#assembly=37e32ee418c7551f182b8bd965c593a9
#annotation=a3494d4779c5463e7f95e175841c9072
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1673.t1 is derived from g8534.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11794366	11795605	.	-	.	Ledus.S2G155500
Ledus.S2	AUGUSTUS	transcript	11794366	11795605	.	-	.	transcript_id "Ledus.S2G155500.t1"; gene_id "Ledus.S2G155500"
Ledus.S2	AUGUSTUS	stop_codon	11794363	11794365	.	-	0	transcript_id "Ledus.S2G155500.t1"; gene_id "Ledus.S2G155500"
Ledus.S2	AUGUSTUS	CDS	11794366	11795235	1	-	0	transcript_id "Ledus.S2G155500.t1"; gene_id "Ledus.S2G155500"
Ledus.S2	AUGUSTUS	exon	11794366	11795235	.	-	.	transcript_id "Ledus.S2G155500.t1"; gene_id "Ledus.S2G155500"
Ledus.S2	AUGUSTUS	intron	11795236	11795314	.	-	.	transcript_id "Ledus.S2G155500.t1"; gene_id "Ledus.S2G155500"
Ledus.S2	AUGUSTUS	CDS	11795315	11795605	0.99	-	0	transcript_id "Ledus.S2G155500.t1"; gene_id "Ledus.S2G155500"
Ledus.S2	AUGUSTUS	exon	11795315	11795605	.	-	.	transcript_id "Ledus.S2G155500.t1"; gene_id "Ledus.S2G155500"
Ledus.S2	AUGUSTUS	start_codon	11795603	11795605	.	-	0	transcript_id "Ledus.S2G155500.t1"; gene_id "Ledus.S2G155500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2032.t1 is derived from g8895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14267320	14268630	.	+	.	Ledus.S2G191400
Ledus.S2	AUGUSTUS	transcript	14267320	14268630	.	+	.	transcript_id "Ledus.S2G191400.t1"; gene_id "Ledus.S2G191400"
Ledus.S2	AUGUSTUS	start_codon	14267320	14267322	.	+	0	transcript_id "Ledus.S2G191400.t1"; gene_id "Ledus.S2G191400"
Ledus.S2	AUGUSTUS	CDS	14267320	14268630	0.59	+	0	transcript_id "Ledus.S2G191400.t1"; gene_id "Ledus.S2G191400"
Ledus.S2	AUGUSTUS	exon	14267320	14268630	.	+	.	transcript_id "Ledus.S2G191400.t1"; gene_id "Ledus.S2G191400"
Ledus.S2	AUGUSTUS	stop_codon	14268631	14268633	.	+	0	transcript_id "Ledus.S2G191400.t1"; gene_id "Ledus.S2G191400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg359.t1 is derived from g7220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1931077	1932368	.	+	.	Ledus.S2G024100
Ledus.S2	AUGUSTUS	transcript	1931077	1932368	.	+	.	transcript_id "Ledus.S2G024100.t1"; gene_id "Ledus.S2G024100"
Ledus.S2	AUGUSTUS	start_codon	1931077	1931079	.	+	0	transcript_id "Ledus.S2G024100.t1"; gene_id "Ledus.S2G024100"
Ledus.S2	AUGUSTUS	CDS	1931077	1931837	0.89	+	0	transcript_id "Ledus.S2G024100.t1"; gene_id "Ledus.S2G024100"
Ledus.S2	AUGUSTUS	exon	1931077	1931837	.	+	.	transcript_id "Ledus.S2G024100.t1"; gene_id "Ledus.S2G024100"
Ledus.S2	AUGUSTUS	intron	1931838	1931999	.	+	.	transcript_id "Ledus.S2G024100.t1"; gene_id "Ledus.S2G024100"
Ledus.S2	AUGUSTUS	CDS	1932000	1932125	1	+	1	transcript_id "Ledus.S2G024100.t1"; gene_id "Ledus.S2G024100"
Ledus.S2	AUGUSTUS	exon	1932000	1932125	.	+	.	transcript_id "Ledus.S2G024100.t1"; gene_id "Ledus.S2G024100"
Ledus.S2	AUGUSTUS	intron	1932126	1932214	.	+	.	transcript_id "Ledus.S2G024100.t1"; gene_id "Ledus.S2G024100"
Ledus.S2	AUGUSTUS	CDS	1932215	1932368	0.72	+	1	transcript_id "Ledus.S2G024100.t1"; gene_id "Ledus.S2G024100"
Ledus.S2	AUGUSTUS	exon	1932215	1932368	.	+	.	transcript_id "Ledus.S2G024100.t1"; gene_id "Ledus.S2G024100"
Ledus.S2	AUGUSTUS	stop_codon	1932369	1932371	.	+	0	transcript_id "Ledus.S2G024100.t1"; gene_id "Ledus.S2G024100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2102.t1 is derived from g8965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14723322	14724006	.	+	.	Ledus.S2G198400
Ledus.S2	AUGUSTUS	transcript	14723322	14724006	.	+	.	transcript_id "Ledus.S2G198400.t1"; gene_id "Ledus.S2G198400"
Ledus.S2	AUGUSTUS	start_codon	14723322	14723324	.	+	0	transcript_id "Ledus.S2G198400.t1"; gene_id "Ledus.S2G198400"
Ledus.S2	AUGUSTUS	CDS	14723322	14723467	0.33	+	0	transcript_id "Ledus.S2G198400.t1"; gene_id "Ledus.S2G198400"
Ledus.S2	AUGUSTUS	exon	14723322	14723467	.	+	.	transcript_id "Ledus.S2G198400.t1"; gene_id "Ledus.S2G198400"
Ledus.S2	AUGUSTUS	intron	14723468	14723609	.	+	.	transcript_id "Ledus.S2G198400.t1"; gene_id "Ledus.S2G198400"
Ledus.S2	AUGUSTUS	CDS	14723610	14724006	0.66	+	1	transcript_id "Ledus.S2G198400.t1"; gene_id "Ledus.S2G198400"
Ledus.S2	AUGUSTUS	exon	14723610	14724006	.	+	.	transcript_id "Ledus.S2G198400.t1"; gene_id "Ledus.S2G198400"
Ledus.S2	AUGUSTUS	stop_codon	14724007	14724009	.	+	0	transcript_id "Ledus.S2G198400.t1"; gene_id "Ledus.S2G198400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7015.t1 is derived from g6546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	818328	820063	.	+	.	Ledus.C7G007600
Ledus.C7	AUGUSTUS	transcript	818328	820063	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	start_codon	818328	818330	.	+	0	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	CDS	818328	818569	1	+	0	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	exon	818328	818569	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	intron	818570	818668	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	CDS	818669	818833	1	+	1	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	exon	818669	818833	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	intron	818834	818928	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	CDS	818929	818980	1	+	1	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	exon	818929	818980	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	intron	818981	819072	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	CDS	819073	819123	0.52	+	0	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	exon	819073	819123	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	intron	819124	819199	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	CDS	819200	819243	0.83	+	0	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	exon	819200	819243	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	intron	819244	819516	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	CDS	819517	819649	0.83	+	1	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	exon	819517	819649	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	intron	819650	819910	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	CDS	819911	820063	0.81	+	0	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	exon	819911	820063	.	+	.	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
Ledus.C7	AUGUSTUS	stop_codon	820064	820066	.	+	0	transcript_id "Ledus.C7G007600.t1"; gene_id "Ledus.C7G007600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3687.t1 is derived from g1123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10851236	10854075	.	-	.	Ledus.S1G110800
Ledus.S1	AUGUSTUS	transcript	10851236	10854075	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	stop_codon	10851233	10851235	.	-	0	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	CDS	10851236	10851421	1	-	0	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	exon	10851236	10851421	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	intron	10851422	10851544	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	CDS	10851545	10851632	1	-	1	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	exon	10851545	10851632	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	intron	10851633	10851729	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	CDS	10851730	10851776	1	-	0	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	exon	10851730	10851776	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	intron	10851777	10851867	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	CDS	10851868	10852009	1	-	1	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	exon	10851868	10852009	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	intron	10852010	10852138	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	CDS	10852139	10852326	1	-	0	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	exon	10852139	10852326	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	intron	10852327	10852718	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	CDS	10852719	10852763	1	-	0	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	exon	10852719	10852763	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	intron	10852764	10852887	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	CDS	10852888	10853022	1	-	0	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	exon	10852888	10853022	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	intron	10853023	10853132	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	CDS	10853133	10853241	0.97	-	1	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	exon	10853133	10853241	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	intron	10853242	10853356	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	CDS	10853357	10853409	0.98	-	0	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	exon	10853357	10853409	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	intron	10853410	10853523	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	CDS	10853524	10853673	0.98	-	0	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	exon	10853524	10853673	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	intron	10853674	10853754	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	CDS	10853755	10854075	0.92	-	0	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	exon	10853755	10854075	.	-	.	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
Ledus.S1	AUGUSTUS	start_codon	10854073	10854075	.	-	0	transcript_id "Ledus.S1G110800.t1"; gene_id "Ledus.S1G110800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9710.t1 is derived from g10740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9236149	9237248	.	-	.	Ledus.S3G118700
Ledus.S3	AUGUSTUS	transcript	9236149	9237248	.	-	.	transcript_id "Ledus.S3G118700.t1"; gene_id "Ledus.S3G118700"
Ledus.S3	AUGUSTUS	stop_codon	9236146	9236148	.	-	0	transcript_id "Ledus.S3G118700.t1"; gene_id "Ledus.S3G118700"
Ledus.S3	AUGUSTUS	CDS	9236149	9236715	0.38	-	0	transcript_id "Ledus.S3G118700.t1"; gene_id "Ledus.S3G118700"
Ledus.S3	AUGUSTUS	exon	9236149	9236715	.	-	.	transcript_id "Ledus.S3G118700.t1"; gene_id "Ledus.S3G118700"
Ledus.S3	AUGUSTUS	intron	9236716	9236906	.	-	.	transcript_id "Ledus.S3G118700.t1"; gene_id "Ledus.S3G118700"
Ledus.S3	AUGUSTUS	CDS	9236907	9237053	1	-	0	transcript_id "Ledus.S3G118700.t1"; gene_id "Ledus.S3G118700"
Ledus.S3	AUGUSTUS	exon	9236907	9237053	.	-	.	transcript_id "Ledus.S3G118700.t1"; gene_id "Ledus.S3G118700"
Ledus.S3	AUGUSTUS	intron	9237054	9237152	.	-	.	transcript_id "Ledus.S3G118700.t1"; gene_id "Ledus.S3G118700"
Ledus.S3	AUGUSTUS	CDS	9237153	9237248	0.98	-	0	transcript_id "Ledus.S3G118700.t1"; gene_id "Ledus.S3G118700"
Ledus.S3	AUGUSTUS	exon	9237153	9237248	.	-	.	transcript_id "Ledus.S3G118700.t1"; gene_id "Ledus.S3G118700"
Ledus.S3	AUGUSTUS	start_codon	9237246	9237248	.	-	0	transcript_id "Ledus.S3G118700.t1"; gene_id "Ledus.S3G118700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7363.t1 is derived from g12034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1455263	1455481	.	-	.	Ledus.S5G014100
Ledus.S5	AUGUSTUS	transcript	1455263	1455481	.	-	.	transcript_id "Ledus.S5G014100.t1"; gene_id "Ledus.S5G014100"
Ledus.S5	AUGUSTUS	stop_codon	1455260	1455262	.	-	0	transcript_id "Ledus.S5G014100.t1"; gene_id "Ledus.S5G014100"
Ledus.S5	AUGUSTUS	CDS	1455263	1455481	0.99	-	0	transcript_id "Ledus.S5G014100.t1"; gene_id "Ledus.S5G014100"
Ledus.S5	AUGUSTUS	exon	1455263	1455481	.	-	.	transcript_id "Ledus.S5G014100.t1"; gene_id "Ledus.S5G014100"
Ledus.S5	AUGUSTUS	start_codon	1455479	1455481	.	-	0	transcript_id "Ledus.S5G014100.t1"; gene_id "Ledus.S5G014100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg296.t1 is derived from g7157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1466216	1468807	.	+	.	Ledus.S2G017800
Ledus.S2	AUGUSTUS	transcript	1466216	1468807	.	+	.	transcript_id "Ledus.S2G017800.t1"; gene_id "Ledus.S2G017800"
Ledus.S2	AUGUSTUS	start_codon	1466216	1466218	.	+	0	transcript_id "Ledus.S2G017800.t1"; gene_id "Ledus.S2G017800"
Ledus.S2	AUGUSTUS	CDS	1466216	1466912	0.92	+	0	transcript_id "Ledus.S2G017800.t1"; gene_id "Ledus.S2G017800"
Ledus.S2	AUGUSTUS	exon	1466216	1466912	.	+	.	transcript_id "Ledus.S2G017800.t1"; gene_id "Ledus.S2G017800"
Ledus.S2	AUGUSTUS	intron	1466913	1467004	.	+	.	transcript_id "Ledus.S2G017800.t1"; gene_id "Ledus.S2G017800"
Ledus.S2	AUGUSTUS	CDS	1467005	1468592	0.99	+	2	transcript_id "Ledus.S2G017800.t1"; gene_id "Ledus.S2G017800"
Ledus.S2	AUGUSTUS	exon	1467005	1468592	.	+	.	transcript_id "Ledus.S2G017800.t1"; gene_id "Ledus.S2G017800"
Ledus.S2	AUGUSTUS	intron	1468593	1468686	.	+	.	transcript_id "Ledus.S2G017800.t1"; gene_id "Ledus.S2G017800"
Ledus.S2	AUGUSTUS	CDS	1468687	1468807	0.92	+	1	transcript_id "Ledus.S2G017800.t1"; gene_id "Ledus.S2G017800"
Ledus.S2	AUGUSTUS	exon	1468687	1468807	.	+	.	transcript_id "Ledus.S2G017800.t1"; gene_id "Ledus.S2G017800"
Ledus.S2	AUGUSTUS	stop_codon	1468808	1468810	.	+	0	transcript_id "Ledus.S2G017800.t1"; gene_id "Ledus.S2G017800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2096.t1 is derived from g8959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14712645	14713187	.	-	.	Ledus.S2G197800
Ledus.S2	AUGUSTUS	transcript	14712645	14713187	.	-	.	transcript_id "Ledus.S2G197800.t1"; gene_id "Ledus.S2G197800"
Ledus.S2	AUGUSTUS	stop_codon	14712642	14712644	.	-	0	transcript_id "Ledus.S2G197800.t1"; gene_id "Ledus.S2G197800"
Ledus.S2	AUGUSTUS	CDS	14712645	14712814	0.99	-	2	transcript_id "Ledus.S2G197800.t1"; gene_id "Ledus.S2G197800"
Ledus.S2	AUGUSTUS	exon	14712645	14712814	.	-	.	transcript_id "Ledus.S2G197800.t1"; gene_id "Ledus.S2G197800"
Ledus.S2	AUGUSTUS	intron	14712815	14712908	.	-	.	transcript_id "Ledus.S2G197800.t1"; gene_id "Ledus.S2G197800"
Ledus.S2	AUGUSTUS	CDS	14712909	14713015	1	-	1	transcript_id "Ledus.S2G197800.t1"; gene_id "Ledus.S2G197800"
Ledus.S2	AUGUSTUS	exon	14712909	14713015	.	-	.	transcript_id "Ledus.S2G197800.t1"; gene_id "Ledus.S2G197800"
Ledus.S2	AUGUSTUS	intron	14713016	14713107	.	-	.	transcript_id "Ledus.S2G197800.t1"; gene_id "Ledus.S2G197800"
Ledus.S2	AUGUSTUS	CDS	14713108	14713187	0.93	-	0	transcript_id "Ledus.S2G197800.t1"; gene_id "Ledus.S2G197800"
Ledus.S2	AUGUSTUS	exon	14713108	14713187	.	-	.	transcript_id "Ledus.S2G197800.t1"; gene_id "Ledus.S2G197800"
Ledus.S2	AUGUSTUS	start_codon	14713185	14713187	.	-	0	transcript_id "Ledus.S2G197800.t1"; gene_id "Ledus.S2G197800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13082.t1 is derived from g6892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5240671	5241057	.	+	.	Ledus.S6G014400
Ledus.S6	AUGUSTUS	transcript	5240671	5241057	.	+	.	transcript_id "Ledus.S6G014400.t1"; gene_id "Ledus.S6G014400"
Ledus.S6	AUGUSTUS	start_codon	5240671	5240673	.	+	0	transcript_id "Ledus.S6G014400.t1"; gene_id "Ledus.S6G014400"
Ledus.S6	AUGUSTUS	CDS	5240671	5241057	0.76	+	0	transcript_id "Ledus.S6G014400.t1"; gene_id "Ledus.S6G014400"
Ledus.S6	AUGUSTUS	exon	5240671	5241057	.	+	.	transcript_id "Ledus.S6G014400.t1"; gene_id "Ledus.S6G014400"
Ledus.S6	AUGUSTUS	stop_codon	5241058	5241060	.	+	0	transcript_id "Ledus.S6G014400.t1"; gene_id "Ledus.S6G014400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7240.t1 is derived from g11911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	219304	220492	.	-	.	Ledus.S5G001800
Ledus.S5	AUGUSTUS	transcript	219304	220492	.	-	.	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	stop_codon	219301	219303	.	-	0	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	CDS	219304	219510	1	-	0	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	exon	219304	219510	.	-	.	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	intron	219511	219589	.	-	.	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	CDS	219590	219747	1	-	2	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	exon	219590	219747	.	-	.	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	intron	219748	219847	.	-	.	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	CDS	219848	219961	1	-	2	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	exon	219848	219961	.	-	.	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	intron	219962	220065	.	-	.	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	CDS	220066	220492	1	-	0	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	exon	220066	220492	.	-	.	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
Ledus.S5	AUGUSTUS	start_codon	220490	220492	.	-	0	transcript_id "Ledus.S5G001800.t1"; gene_id "Ledus.S5G001800"
# This transcript jg8715.t2 is derived from g9745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8716.t1 is derived from g9746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1564662	1567024	.	-	.	Ledus.S3G019300
Ledus.S3	AUGUSTUS	transcript	1564662	1567024	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	stop_codon	1564659	1564661	.	-	0	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	CDS	1564662	1564724	1	-	0	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	exon	1564662	1564724	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	intron	1564725	1564812	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	CDS	1564813	1564969	0.99	-	1	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	exon	1564813	1564969	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	intron	1564970	1565056	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	CDS	1565057	1565230	1	-	1	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	exon	1565057	1565230	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	intron	1565231	1565337	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	CDS	1565338	1565429	1	-	0	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	exon	1565338	1565429	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	intron	1565430	1565538	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	CDS	1565539	1565636	1	-	2	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	exon	1565539	1565636	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	intron	1565637	1565807	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	CDS	1565808	1565993	0.99	-	2	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	exon	1565808	1565993	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	intron	1565994	1566150	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	CDS	1566151	1566223	1	-	0	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	exon	1566151	1566223	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	intron	1566224	1566386	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	CDS	1566387	1566567	1	-	1	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	exon	1566387	1566567	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	intron	1566568	1566698	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	CDS	1566699	1566798	1	-	2	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	exon	1566699	1566798	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	intron	1566799	1566876	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	CDS	1566877	1567024	0.85	-	0	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	exon	1566877	1567024	.	-	.	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
Ledus.S3	AUGUSTUS	start_codon	1567022	1567024	.	-	0	transcript_id "Ledus.S3G019300.t1"; gene_id "Ledus.S3G019300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7543.t1 is derived from g12214.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3756479	3759721	.	-	.	Ledus.S5G032100
Ledus.S5	AUGUSTUS	transcript	3756479	3759721	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	stop_codon	3756476	3756478	.	-	0	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	CDS	3756479	3756690	1	-	2	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	exon	3756479	3756690	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	intron	3756691	3756765	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	CDS	3756766	3756916	1	-	0	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	exon	3756766	3756916	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	intron	3756917	3757019	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	CDS	3757020	3757142	1	-	0	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	exon	3757020	3757142	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	intron	3757143	3757601	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	CDS	3757602	3757692	1	-	1	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	exon	3757602	3757692	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	intron	3757693	3757949	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	CDS	3757950	3758144	1	-	1	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	exon	3757950	3758144	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	intron	3758145	3758312	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	CDS	3758313	3758545	1	-	0	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	exon	3758313	3758545	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	intron	3758546	3758635	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	CDS	3758636	3758716	1	-	0	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	exon	3758636	3758716	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	intron	3758717	3758861	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	CDS	3758862	3758958	1	-	1	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	exon	3758862	3758958	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	intron	3758959	3759048	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	CDS	3759049	3759140	1	-	0	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	exon	3759049	3759140	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	intron	3759141	3759235	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	CDS	3759236	3759348	1	-	2	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	exon	3759236	3759348	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	intron	3759349	3759447	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	CDS	3759448	3759562	1	-	0	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	exon	3759448	3759562	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	intron	3759563	3759637	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	CDS	3759638	3759721	0.92	-	0	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	exon	3759638	3759721	.	-	.	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
Ledus.S5	AUGUSTUS	start_codon	3759719	3759721	.	-	0	transcript_id "Ledus.S5G032100.t1"; gene_id "Ledus.S5G032100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6300.t1 is derived from g3743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30311588	30311854	.	-	.	Ledus.S1G372100
Ledus.S1	AUGUSTUS	transcript	30311588	30311854	.	-	.	transcript_id "Ledus.S1G372100.t1"; gene_id "Ledus.S1G372100"
Ledus.S1	AUGUSTUS	stop_codon	30311585	30311587	.	-	0	transcript_id "Ledus.S1G372100.t1"; gene_id "Ledus.S1G372100"
Ledus.S1	AUGUSTUS	CDS	30311588	30311854	0.38	-	0	transcript_id "Ledus.S1G372100.t1"; gene_id "Ledus.S1G372100"
Ledus.S1	AUGUSTUS	exon	30311588	30311854	.	-	.	transcript_id "Ledus.S1G372100.t1"; gene_id "Ledus.S1G372100"
Ledus.S1	AUGUSTUS	start_codon	30311852	30311854	.	-	0	transcript_id "Ledus.S1G372100.t1"; gene_id "Ledus.S1G372100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11100.t1 is derived from g4718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1789161	1790432	.	+	.	Ledus.S4G025600
Ledus.S4	AUGUSTUS	transcript	1789161	1790432	.	+	.	transcript_id "Ledus.S4G025600.t1"; gene_id "Ledus.S4G025600"
Ledus.S4	AUGUSTUS	start_codon	1789161	1789163	.	+	0	transcript_id "Ledus.S4G025600.t1"; gene_id "Ledus.S4G025600"
Ledus.S4	AUGUSTUS	CDS	1789161	1790432	1	+	0	transcript_id "Ledus.S4G025600.t1"; gene_id "Ledus.S4G025600"
Ledus.S4	AUGUSTUS	exon	1789161	1790432	.	+	.	transcript_id "Ledus.S4G025600.t1"; gene_id "Ledus.S4G025600"
Ledus.S4	AUGUSTUS	stop_codon	1790433	1790435	.	+	0	transcript_id "Ledus.S4G025600.t1"; gene_id "Ledus.S4G025600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6076.t1 is derived from g3519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28824610	28826111	.	-	.	Ledus.S1G349700
Ledus.S1	AUGUSTUS	transcript	28824610	28826111	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	stop_codon	28824607	28824609	.	-	0	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	CDS	28824610	28824769	1	-	1	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	exon	28824610	28824769	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	intron	28824770	28824856	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	CDS	28824857	28824971	1	-	2	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	exon	28824857	28824971	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	intron	28824972	28825102	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	CDS	28825103	28825139	1	-	0	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	exon	28825103	28825139	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	intron	28825140	28825213	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	CDS	28825214	28825289	0.9	-	1	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	exon	28825214	28825289	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	intron	28825290	28825392	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	CDS	28825393	28825448	0.85	-	0	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	exon	28825393	28825448	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	intron	28825449	28825554	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	CDS	28825555	28825624	0.94	-	1	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	exon	28825555	28825624	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	intron	28825625	28825707	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	CDS	28825708	28825767	1	-	1	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	exon	28825708	28825767	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	intron	28825768	28825863	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	CDS	28825864	28826111	0.49	-	0	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	exon	28825864	28826111	.	-	.	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
Ledus.S1	AUGUSTUS	start_codon	28826109	28826111	.	-	0	transcript_id "Ledus.S1G349700.t1"; gene_id "Ledus.S1G349700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6283.t1 is derived from g3726.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30112907	30116969	.	-	.	Ledus.S1G370400
Ledus.S1	AUGUSTUS	transcript	30112907	30116969	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	stop_codon	30112904	30112906	.	-	0	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	CDS	30112907	30112996	0.99	-	0	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	exon	30112907	30112996	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	intron	30112997	30113084	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	CDS	30113085	30113168	1	-	0	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	exon	30113085	30113168	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	intron	30113169	30113267	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	CDS	30113268	30113372	1	-	0	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	exon	30113268	30113372	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	intron	30113373	30113515	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	CDS	30113516	30113558	1	-	1	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	exon	30113516	30113558	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	intron	30113559	30113643	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	CDS	30113644	30113726	1	-	0	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	exon	30113644	30113726	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	intron	30113727	30113888	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	CDS	30113889	30113993	1	-	0	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	exon	30113889	30113993	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	intron	30113994	30114347	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	CDS	30114348	30114510	0.81	-	1	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	exon	30114348	30114510	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	intron	30114511	30114675	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	CDS	30114676	30114763	1	-	2	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	exon	30114676	30114763	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	intron	30114764	30114879	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	CDS	30114880	30115019	0.5	-	1	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	exon	30114880	30115019	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	intron	30115020	30115151	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	CDS	30115152	30115209	0.66	-	2	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	exon	30115152	30115209	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	intron	30115210	30115363	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	CDS	30115364	30116969	0.52	-	0	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	exon	30115364	30116969	.	-	.	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
Ledus.S1	AUGUSTUS	start_codon	30116967	30116969	.	-	0	transcript_id "Ledus.S1G370400.t1"; gene_id "Ledus.S1G370400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12142.t1 is derived from g5761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9785165	9787485	.	+	.	Ledus.S4G129800
Ledus.S4	AUGUSTUS	transcript	9785165	9787485	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	start_codon	9785165	9785167	.	+	0	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	CDS	9785165	9786013	0.94	+	0	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	exon	9785165	9786013	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	intron	9786014	9786083	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	CDS	9786084	9786263	1	+	0	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	exon	9786084	9786263	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	intron	9786264	9786363	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	CDS	9786364	9786458	1	+	0	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	exon	9786364	9786458	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	intron	9786459	9786550	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	CDS	9786551	9786626	1	+	1	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	exon	9786551	9786626	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	intron	9786627	9786695	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	CDS	9786696	9786773	1	+	0	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	exon	9786696	9786773	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	intron	9786774	9786884	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	CDS	9786885	9786978	1	+	0	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	exon	9786885	9786978	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	intron	9786979	9787058	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	CDS	9787059	9787108	1	+	2	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	exon	9787059	9787108	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	intron	9787109	9787223	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	CDS	9787224	9787325	1	+	0	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	exon	9787224	9787325	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	intron	9787326	9787395	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	CDS	9787396	9787485	0.6	+	0	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	exon	9787396	9787485	.	+	.	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
Ledus.S4	AUGUSTUS	stop_codon	9787486	9787488	.	+	0	transcript_id "Ledus.S4G129800.t1"; gene_id "Ledus.S4G129800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5670.t1 is derived from g3109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25729937	25730902	.	-	.	Ledus.S1G309100
Ledus.S1	AUGUSTUS	transcript	25729937	25730902	.	-	.	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	stop_codon	25729934	25729936	.	-	0	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	CDS	25729937	25729963	0.78	-	0	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	exon	25729937	25729963	.	-	.	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	intron	25729964	25730051	.	-	.	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	CDS	25730052	25730144	0.85	-	0	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	exon	25730052	25730144	.	-	.	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	intron	25730145	25730551	.	-	.	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	CDS	25730552	25730613	0.64	-	2	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	exon	25730552	25730613	.	-	.	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	intron	25730614	25730772	.	-	.	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	CDS	25730773	25730902	0.44	-	0	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	exon	25730773	25730902	.	-	.	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
Ledus.S1	AUGUSTUS	start_codon	25730900	25730902	.	-	0	transcript_id "Ledus.S1G309100.t1"; gene_id "Ledus.S1G309100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4951.t1 is derived from g2389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20858105	20859385	.	+	.	Ledus.S1G237200
Ledus.S1	AUGUSTUS	transcript	20858105	20859385	.	+	.	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	start_codon	20858105	20858107	.	+	0	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	CDS	20858105	20858189	0.97	+	0	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	exon	20858105	20858189	.	+	.	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	intron	20858190	20858339	.	+	.	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	CDS	20858340	20858498	0.97	+	2	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	exon	20858340	20858498	.	+	.	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	intron	20858499	20858580	.	+	.	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	CDS	20858581	20858748	0.95	+	2	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	exon	20858581	20858748	.	+	.	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	intron	20858749	20858839	.	+	.	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	CDS	20858840	20858985	1	+	2	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	exon	20858840	20858985	.	+	.	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	intron	20858986	20859084	.	+	.	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	CDS	20859085	20859233	1	+	0	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	exon	20859085	20859233	.	+	.	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	intron	20859234	20859327	.	+	.	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	CDS	20859328	20859385	0.98	+	1	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	exon	20859328	20859385	.	+	.	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
Ledus.S1	AUGUSTUS	stop_codon	20859386	20859388	.	+	0	transcript_id "Ledus.S1G237200.t1"; gene_id "Ledus.S1G237200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3959.t1 is derived from g1395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13768586	13769989	.	+	.	Ledus.S1G138000
Ledus.S1	AUGUSTUS	transcript	13768586	13769989	.	+	.	transcript_id "Ledus.S1G138000.t1"; gene_id "Ledus.S1G138000"
Ledus.S1	AUGUSTUS	start_codon	13768586	13768588	.	+	0	transcript_id "Ledus.S1G138000.t1"; gene_id "Ledus.S1G138000"
Ledus.S1	AUGUSTUS	CDS	13768586	13769989	0.95	+	0	transcript_id "Ledus.S1G138000.t1"; gene_id "Ledus.S1G138000"
Ledus.S1	AUGUSTUS	exon	13768586	13769989	.	+	.	transcript_id "Ledus.S1G138000.t1"; gene_id "Ledus.S1G138000"
Ledus.S1	AUGUSTUS	stop_codon	13769990	13769992	.	+	0	transcript_id "Ledus.S1G138000.t1"; gene_id "Ledus.S1G138000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12915.t1 is derived from g4407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	316497	316807	.	-	.	Ledus.C9G002300
Ledus.C9	AUGUSTUS	transcript	316497	316807	.	-	.	transcript_id "Ledus.C9G002300.t1"; gene_id "Ledus.C9G002300"
Ledus.C9	AUGUSTUS	stop_codon	316494	316496	.	-	0	transcript_id "Ledus.C9G002300.t1"; gene_id "Ledus.C9G002300"
Ledus.C9	AUGUSTUS	CDS	316497	316620	0.99	-	1	transcript_id "Ledus.C9G002300.t1"; gene_id "Ledus.C9G002300"
Ledus.C9	AUGUSTUS	exon	316497	316620	.	-	.	transcript_id "Ledus.C9G002300.t1"; gene_id "Ledus.C9G002300"
Ledus.C9	AUGUSTUS	intron	316621	316712	.	-	.	transcript_id "Ledus.C9G002300.t1"; gene_id "Ledus.C9G002300"
Ledus.C9	AUGUSTUS	CDS	316713	316807	0.9	-	0	transcript_id "Ledus.C9G002300.t1"; gene_id "Ledus.C9G002300"
Ledus.C9	AUGUSTUS	exon	316713	316807	.	-	.	transcript_id "Ledus.C9G002300.t1"; gene_id "Ledus.C9G002300"
Ledus.C9	AUGUSTUS	start_codon	316805	316807	.	-	0	transcript_id "Ledus.C9G002300.t1"; gene_id "Ledus.C9G002300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6976.t1 is derived from g6507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	509858	511077	.	+	.	Ledus.C7G003700
Ledus.C7	AUGUSTUS	transcript	509858	511077	.	+	.	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	start_codon	509858	509860	.	+	0	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	CDS	509858	510060	0.88	+	0	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	exon	509858	510060	.	+	.	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	intron	510061	510153	.	+	.	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	CDS	510154	510183	1	+	1	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	exon	510154	510183	.	+	.	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	intron	510184	510348	.	+	.	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	CDS	510349	510458	1	+	1	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	exon	510349	510458	.	+	.	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	intron	510459	510539	.	+	.	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	CDS	510540	510719	0.75	+	2	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	exon	510540	510719	.	+	.	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	intron	510720	510825	.	+	.	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	CDS	510826	510953	1	+	2	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	exon	510826	510953	.	+	.	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	intron	510954	511050	.	+	.	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	CDS	511051	511077	1	+	0	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	exon	511051	511077	.	+	.	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
Ledus.C7	AUGUSTUS	stop_codon	511078	511080	.	+	0	transcript_id "Ledus.C7G003700.t1"; gene_id "Ledus.C7G003700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4704.t1 is derived from g2142.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19137137	19138074	.	+	.	Ledus.S1G212500
Ledus.S1	AUGUSTUS	transcript	19137297	19138074	.	+	.	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	start_codon	19137297	19137299	.	+	0	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	CDS	19137297	19137320	0.98	+	0	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	exon	19137297	19137320	.	+	.	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	intron	19137321	19137405	.	+	.	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	CDS	19137406	19137551	1	+	0	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	exon	19137406	19137551	.	+	.	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	intron	19137552	19137651	.	+	.	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	CDS	19137652	19137696	1	+	1	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	exon	19137652	19137696	.	+	.	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	intron	19137697	19137869	.	+	.	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	CDS	19137870	19137929	1	+	1	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	exon	19137870	19137929	.	+	.	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	intron	19137930	19138067	.	+	.	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	CDS	19138068	19138074	1	+	1	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	exon	19138068	19138074	.	+	.	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	stop_codon	19138075	19138077	.	+	0	transcript_id "Ledus.S1G212500.t1"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	transcript	19137137	19138074	.	+	.	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	start_codon	19137137	19137139	.	+	0	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	CDS	19137137	19137320	0.74	+	0	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	exon	19137137	19137320	.	+	.	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	intron	19137321	19137418	.	+	.	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	CDS	19137419	19137551	1	+	2	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	exon	19137419	19137551	.	+	.	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	intron	19137552	19137651	.	+	.	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	CDS	19137652	19137696	1	+	1	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	exon	19137652	19137696	.	+	.	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	intron	19137697	19137869	.	+	.	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	CDS	19137870	19137929	1	+	1	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	exon	19137870	19137929	.	+	.	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	intron	19137930	19138067	.	+	.	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	CDS	19138068	19138074	1	+	1	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	exon	19138068	19138074	.	+	.	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
Ledus.S1	AUGUSTUS	stop_codon	19138075	19138077	.	+	0	transcript_id "Ledus.S1G212500.t2"; gene_id "Ledus.S1G212500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3595.t1 is derived from g1031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9922993	9924991	.	-	.	Ledus.S1G101600
Ledus.S1	AUGUSTUS	transcript	9922993	9924991	.	-	.	transcript_id "Ledus.S1G101600.t1"; gene_id "Ledus.S1G101600"
Ledus.S1	AUGUSTUS	stop_codon	9922990	9922992	.	-	0	transcript_id "Ledus.S1G101600.t1"; gene_id "Ledus.S1G101600"
Ledus.S1	AUGUSTUS	CDS	9922993	9923208	1	-	0	transcript_id "Ledus.S1G101600.t1"; gene_id "Ledus.S1G101600"
Ledus.S1	AUGUSTUS	exon	9922993	9923208	.	-	.	transcript_id "Ledus.S1G101600.t1"; gene_id "Ledus.S1G101600"
Ledus.S1	AUGUSTUS	intron	9923209	9923485	.	-	.	transcript_id "Ledus.S1G101600.t1"; gene_id "Ledus.S1G101600"
Ledus.S1	AUGUSTUS	CDS	9923486	9924991	0.49	-	0	transcript_id "Ledus.S1G101600.t1"; gene_id "Ledus.S1G101600"
Ledus.S1	AUGUSTUS	exon	9923486	9924991	.	-	.	transcript_id "Ledus.S1G101600.t1"; gene_id "Ledus.S1G101600"
Ledus.S1	AUGUSTUS	start_codon	9924989	9924991	.	-	0	transcript_id "Ledus.S1G101600.t1"; gene_id "Ledus.S1G101600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3985.t1 is derived from g1421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13915304	13917064	.	+	.	Ledus.S1G140600
Ledus.S1	AUGUSTUS	transcript	13915304	13917064	.	+	.	transcript_id "Ledus.S1G140600.t1"; gene_id "Ledus.S1G140600"
Ledus.S1	AUGUSTUS	start_codon	13915304	13915306	.	+	0	transcript_id "Ledus.S1G140600.t1"; gene_id "Ledus.S1G140600"
Ledus.S1	AUGUSTUS	CDS	13915304	13917064	0.85	+	0	transcript_id "Ledus.S1G140600.t1"; gene_id "Ledus.S1G140600"
Ledus.S1	AUGUSTUS	exon	13915304	13917064	.	+	.	transcript_id "Ledus.S1G140600.t1"; gene_id "Ledus.S1G140600"
Ledus.S1	AUGUSTUS	stop_codon	13917065	13917067	.	+	0	transcript_id "Ledus.S1G140600.t1"; gene_id "Ledus.S1G140600"
Ledus.S1	AUGUSTUS	transcript	13915382	13917064	.	+	.	transcript_id "Ledus.S1G140600.t2"; gene_id "Ledus.S1G140600"
Ledus.S1	AUGUSTUS	start_codon	13915382	13915384	.	+	0	transcript_id "Ledus.S1G140600.t2"; gene_id "Ledus.S1G140600"
Ledus.S1	AUGUSTUS	CDS	13915382	13917064	0.6	+	0	transcript_id "Ledus.S1G140600.t2"; gene_id "Ledus.S1G140600"
Ledus.S1	AUGUSTUS	exon	13915382	13917064	.	+	.	transcript_id "Ledus.S1G140600.t2"; gene_id "Ledus.S1G140600"
Ledus.S1	AUGUSTUS	stop_codon	13917065	13917067	.	+	0	transcript_id "Ledus.S1G140600.t2"; gene_id "Ledus.S1G140600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9851.t1 is derived from g10881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10554449	10554975	.	+	.	Ledus.S3G132800
Ledus.S3	AUGUSTUS	transcript	10554449	10554975	.	+	.	transcript_id "Ledus.S3G132800.t1"; gene_id "Ledus.S3G132800"
Ledus.S3	AUGUSTUS	start_codon	10554449	10554451	.	+	0	transcript_id "Ledus.S3G132800.t1"; gene_id "Ledus.S3G132800"
Ledus.S3	AUGUSTUS	CDS	10554449	10554509	0.93	+	0	transcript_id "Ledus.S3G132800.t1"; gene_id "Ledus.S3G132800"
Ledus.S3	AUGUSTUS	exon	10554449	10554509	.	+	.	transcript_id "Ledus.S3G132800.t1"; gene_id "Ledus.S3G132800"
Ledus.S3	AUGUSTUS	intron	10554510	10554739	.	+	.	transcript_id "Ledus.S3G132800.t1"; gene_id "Ledus.S3G132800"
Ledus.S3	AUGUSTUS	CDS	10554740	10554975	0.59	+	2	transcript_id "Ledus.S3G132800.t1"; gene_id "Ledus.S3G132800"
Ledus.S3	AUGUSTUS	exon	10554740	10554975	.	+	.	transcript_id "Ledus.S3G132800.t1"; gene_id "Ledus.S3G132800"
Ledus.S3	AUGUSTUS	stop_codon	10554976	10554978	.	+	0	transcript_id "Ledus.S3G132800.t1"; gene_id "Ledus.S3G132800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7460.t1 is derived from g12131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2867576	2869151	.	-	.	Ledus.S5G023800
Ledus.S5	AUGUSTUS	transcript	2867576	2869151	.	-	.	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	stop_codon	2867573	2867575	.	-	0	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	CDS	2867576	2867635	1	-	0	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	exon	2867576	2867635	.	-	.	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	intron	2867636	2867830	.	-	.	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	CDS	2867831	2867941	1	-	0	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	exon	2867831	2867941	.	-	.	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	intron	2867942	2868075	.	-	.	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	CDS	2868076	2868148	1	-	1	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	exon	2868076	2868148	.	-	.	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	intron	2868149	2868402	.	-	.	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	CDS	2868403	2869151	0.32	-	0	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	exon	2868403	2869151	.	-	.	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
Ledus.S5	AUGUSTUS	start_codon	2869149	2869151	.	-	0	transcript_id "Ledus.S5G023800.t1"; gene_id "Ledus.S5G023800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12058.t1 is derived from g5677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9261682	9263299	.	+	.	Ledus.S4G121400
Ledus.S4	AUGUSTUS	transcript	9261682	9263299	.	+	.	transcript_id "Ledus.S4G121400.t1"; gene_id "Ledus.S4G121400"
Ledus.S4	AUGUSTUS	start_codon	9261682	9261684	.	+	0	transcript_id "Ledus.S4G121400.t1"; gene_id "Ledus.S4G121400"
Ledus.S4	AUGUSTUS	CDS	9261682	9262792	0.4	+	0	transcript_id "Ledus.S4G121400.t1"; gene_id "Ledus.S4G121400"
Ledus.S4	AUGUSTUS	exon	9261682	9262792	.	+	.	transcript_id "Ledus.S4G121400.t1"; gene_id "Ledus.S4G121400"
Ledus.S4	AUGUSTUS	intron	9262793	9262880	.	+	.	transcript_id "Ledus.S4G121400.t1"; gene_id "Ledus.S4G121400"
Ledus.S4	AUGUSTUS	CDS	9262881	9263019	0.62	+	2	transcript_id "Ledus.S4G121400.t1"; gene_id "Ledus.S4G121400"
Ledus.S4	AUGUSTUS	exon	9262881	9263019	.	+	.	transcript_id "Ledus.S4G121400.t1"; gene_id "Ledus.S4G121400"
Ledus.S4	AUGUSTUS	intron	9263020	9263214	.	+	.	transcript_id "Ledus.S4G121400.t1"; gene_id "Ledus.S4G121400"
Ledus.S4	AUGUSTUS	CDS	9263215	9263299	0.52	+	1	transcript_id "Ledus.S4G121400.t1"; gene_id "Ledus.S4G121400"
Ledus.S4	AUGUSTUS	exon	9263215	9263299	.	+	.	transcript_id "Ledus.S4G121400.t1"; gene_id "Ledus.S4G121400"
Ledus.S4	AUGUSTUS	stop_codon	9263300	9263302	.	+	0	transcript_id "Ledus.S4G121400.t1"; gene_id "Ledus.S4G121400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6381.t1 is derived from g3824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30920249	30920569	.	+	.	Ledus.S1G380200
Ledus.S1	AUGUSTUS	transcript	30920249	30920569	.	+	.	transcript_id "Ledus.S1G380200.t1"; gene_id "Ledus.S1G380200"
Ledus.S1	AUGUSTUS	start_codon	30920249	30920251	.	+	0	transcript_id "Ledus.S1G380200.t1"; gene_id "Ledus.S1G380200"
Ledus.S1	AUGUSTUS	CDS	30920249	30920569	0.89	+	0	transcript_id "Ledus.S1G380200.t1"; gene_id "Ledus.S1G380200"
Ledus.S1	AUGUSTUS	exon	30920249	30920569	.	+	.	transcript_id "Ledus.S1G380200.t1"; gene_id "Ledus.S1G380200"
Ledus.S1	AUGUSTUS	stop_codon	30920570	30920572	.	+	0	transcript_id "Ledus.S1G380200.t1"; gene_id "Ledus.S1G380200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10868.t1 is derived from g4486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	173747	176487	.	+	.	Ledus.S4G002400
Ledus.S4	AUGUSTUS	transcript	173799	176487	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	start_codon	173799	173801	.	+	0	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	173799	173805	0.85	+	0	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	173799	173805	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	173806	173972	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	173973	174389	0.98	+	2	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	173973	174389	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	174390	174479	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	174480	174655	1	+	2	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	174480	174655	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	174656	174817	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	174818	175041	1	+	0	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	174818	175041	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	175042	175185	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	175186	175295	1	+	1	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	175186	175295	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	175296	175412	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	175413	175549	0.98	+	2	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	175413	175549	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	175550	175665	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	175666	175882	1	+	0	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	175666	175882	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	175883	175982	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	175983	176112	1	+	2	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	175983	176112	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	176113	176195	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	176196	176487	1	+	1	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	176196	176487	.	+	.	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	stop_codon	176488	176490	.	+	0	transcript_id "Ledus.S4G002400.t1"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	transcript	173747	176487	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	start_codon	173747	173749	.	+	0	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	173747	173805	0.7	+	0	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	173747	173805	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	173806	173955	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	173956	174389	1	+	1	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	173956	174389	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	174390	174479	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	174480	174655	1	+	2	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	174480	174655	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	174656	174817	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	174818	175041	1	+	0	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	174818	175041	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	175042	175185	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	175186	175295	1	+	1	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	175186	175295	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	175296	175412	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	175413	175549	0.98	+	2	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	175413	175549	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	175550	175665	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	175666	175882	1	+	0	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	175666	175882	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	175883	175982	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	175983	176112	1	+	2	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	175983	176112	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	intron	176113	176195	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	CDS	176196	176487	1	+	1	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	exon	176196	176487	.	+	.	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
Ledus.S4	AUGUSTUS	stop_codon	176488	176490	.	+	0	transcript_id "Ledus.S4G002400.t2"; gene_id "Ledus.S4G002400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9040.t1 is derived from g10070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4014597	4017663	.	-	.	Ledus.S3G051700
Ledus.S3	AUGUSTUS	transcript	4014597	4017663	.	-	.	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	stop_codon	4014594	4014596	.	-	0	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	CDS	4014597	4016150	0.9	-	0	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	exon	4014597	4016150	.	-	.	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	intron	4016151	4016283	.	-	.	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	CDS	4016284	4016564	1	-	2	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	exon	4016284	4016564	.	-	.	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	intron	4016565	4016658	.	-	.	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	CDS	4016659	4016800	1	-	0	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	exon	4016659	4016800	.	-	.	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	intron	4016801	4017151	.	-	.	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	CDS	4017152	4017376	0.52	-	0	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	exon	4017152	4017376	.	-	.	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	intron	4017377	4017468	.	-	.	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	CDS	4017469	4017552	0.37	-	0	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	exon	4017469	4017552	.	-	.	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	intron	4017553	4017624	.	-	.	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	CDS	4017625	4017663	0.34	-	0	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	exon	4017625	4017663	.	-	.	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
Ledus.S3	AUGUSTUS	start_codon	4017661	4017663	.	-	0	transcript_id "Ledus.S3G051700.t1"; gene_id "Ledus.S3G051700"
# This transcript jg10602.t2 is derived from g11632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10603.t1 is derived from g11633.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16312370	16313365	.	+	.	Ledus.S3G208000
Ledus.S3	AUGUSTUS	transcript	16312370	16313365	.	+	.	transcript_id "Ledus.S3G208000.t1"; gene_id "Ledus.S3G208000"
Ledus.S3	AUGUSTUS	start_codon	16312370	16312372	.	+	0	transcript_id "Ledus.S3G208000.t1"; gene_id "Ledus.S3G208000"
Ledus.S3	AUGUSTUS	CDS	16312370	16313365	0.68	+	0	transcript_id "Ledus.S3G208000.t1"; gene_id "Ledus.S3G208000"
Ledus.S3	AUGUSTUS	exon	16312370	16313365	.	+	.	transcript_id "Ledus.S3G208000.t1"; gene_id "Ledus.S3G208000"
Ledus.S3	AUGUSTUS	stop_codon	16313366	16313368	.	+	0	transcript_id "Ledus.S3G208000.t1"; gene_id "Ledus.S3G208000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6968.t1 is derived from g6499.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	479719	480434	.	+	.	Ledus.C7G002900
Ledus.C7	AUGUSTUS	transcript	479719	480434	.	+	.	transcript_id "Ledus.C7G002900.t1"; gene_id "Ledus.C7G002900"
Ledus.C7	AUGUSTUS	start_codon	479719	479721	.	+	0	transcript_id "Ledus.C7G002900.t1"; gene_id "Ledus.C7G002900"
Ledus.C7	AUGUSTUS	CDS	479719	479896	0.92	+	0	transcript_id "Ledus.C7G002900.t1"; gene_id "Ledus.C7G002900"
Ledus.C7	AUGUSTUS	exon	479719	479896	.	+	.	transcript_id "Ledus.C7G002900.t1"; gene_id "Ledus.C7G002900"
Ledus.C7	AUGUSTUS	intron	479897	479987	.	+	.	transcript_id "Ledus.C7G002900.t1"; gene_id "Ledus.C7G002900"
Ledus.C7	AUGUSTUS	CDS	479988	480142	1	+	2	transcript_id "Ledus.C7G002900.t1"; gene_id "Ledus.C7G002900"
Ledus.C7	AUGUSTUS	exon	479988	480142	.	+	.	transcript_id "Ledus.C7G002900.t1"; gene_id "Ledus.C7G002900"
Ledus.C7	AUGUSTUS	intron	480143	480230	.	+	.	transcript_id "Ledus.C7G002900.t1"; gene_id "Ledus.C7G002900"
Ledus.C7	AUGUSTUS	CDS	480231	480434	1	+	0	transcript_id "Ledus.C7G002900.t1"; gene_id "Ledus.C7G002900"
Ledus.C7	AUGUSTUS	exon	480231	480434	.	+	.	transcript_id "Ledus.C7G002900.t1"; gene_id "Ledus.C7G002900"
Ledus.C7	AUGUSTUS	stop_codon	480435	480437	.	+	0	transcript_id "Ledus.C7G002900.t1"; gene_id "Ledus.C7G002900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5345.t1 is derived from g2784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23484899	23488894	.	+	.	Ledus.S1G276600
Ledus.S1	AUGUSTUS	transcript	23484899	23488894	.	+	.	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	start_codon	23484899	23484901	.	+	0	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	CDS	23484899	23485396	1	+	0	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	exon	23484899	23485396	.	+	.	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	intron	23485397	23485520	.	+	.	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	CDS	23485521	23485923	1	+	0	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	exon	23485521	23485923	.	+	.	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	intron	23485924	23486048	.	+	.	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	CDS	23486049	23487559	0.98	+	2	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	exon	23486049	23487559	.	+	.	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	intron	23487560	23487707	.	+	.	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	CDS	23487708	23488157	1	+	0	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	exon	23487708	23488157	.	+	.	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	intron	23488158	23488246	.	+	.	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	CDS	23488247	23488894	0.82	+	0	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	exon	23488247	23488894	.	+	.	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
Ledus.S1	AUGUSTUS	stop_codon	23488895	23488897	.	+	0	transcript_id "Ledus.S1G276600.t1"; gene_id "Ledus.S1G276600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7287.t1 is derived from g11958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	762311	764935	.	-	.	Ledus.S5G006500
Ledus.S5	AUGUSTUS	transcript	762311	764935	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	stop_codon	762308	762310	.	-	0	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	CDS	762311	762517	0.86	-	0	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	exon	762311	762517	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	intron	762518	762709	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	CDS	762710	762844	0.99	-	0	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	exon	762710	762844	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	intron	762845	762957	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	CDS	762958	763132	0.99	-	1	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	exon	762958	763132	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	intron	763133	763245	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	CDS	763246	763454	0.98	-	0	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	exon	763246	763454	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	intron	763455	763583	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	CDS	763584	763705	1	-	2	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	exon	763584	763705	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	intron	763706	763999	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	CDS	764000	764376	0.49	-	1	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	exon	764000	764376	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	intron	764377	764654	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	CDS	764655	764935	0.52	-	0	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	exon	764655	764935	.	-	.	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
Ledus.S5	AUGUSTUS	start_codon	764933	764935	.	-	0	transcript_id "Ledus.S5G006500.t1"; gene_id "Ledus.S5G006500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6883.t1 is derived from g4327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34937792	34938668	.	+	.	Ledus.S1G430400
Ledus.S1	AUGUSTUS	transcript	34937792	34938668	.	+	.	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	start_codon	34937792	34937794	.	+	0	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	CDS	34937792	34937883	0.21	+	0	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	exon	34937792	34937883	.	+	.	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	intron	34937884	34938007	.	+	.	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	CDS	34938008	34938035	0.66	+	1	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	exon	34938008	34938035	.	+	.	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	intron	34938036	34938139	.	+	.	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	CDS	34938140	34938292	0.93	+	0	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	exon	34938140	34938292	.	+	.	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	intron	34938293	34938411	.	+	.	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	CDS	34938412	34938514	0.97	+	0	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	exon	34938412	34938514	.	+	.	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	intron	34938515	34938609	.	+	.	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	CDS	34938610	34938668	0.97	+	2	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	exon	34938610	34938668	.	+	.	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
Ledus.S1	AUGUSTUS	stop_codon	34938669	34938671	.	+	0	transcript_id "Ledus.S1G430400.t1"; gene_id "Ledus.S1G430400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11429.t1 is derived from g5047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4244726	4245202	.	-	.	Ledus.S4G058500
Ledus.S4	AUGUSTUS	transcript	4244726	4245202	.	-	.	transcript_id "Ledus.S4G058500.t1"; gene_id "Ledus.S4G058500"
Ledus.S4	AUGUSTUS	stop_codon	4244723	4244725	.	-	0	transcript_id "Ledus.S4G058500.t1"; gene_id "Ledus.S4G058500"
Ledus.S4	AUGUSTUS	CDS	4244726	4245202	0.63	-	0	transcript_id "Ledus.S4G058500.t1"; gene_id "Ledus.S4G058500"
Ledus.S4	AUGUSTUS	exon	4244726	4245202	.	-	.	transcript_id "Ledus.S4G058500.t1"; gene_id "Ledus.S4G058500"
Ledus.S4	AUGUSTUS	start_codon	4245200	4245202	.	-	0	transcript_id "Ledus.S4G058500.t1"; gene_id "Ledus.S4G058500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4691.t1 is derived from g2129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19061648	19062611	.	-	.	Ledus.S1G211200
Ledus.S1	AUGUSTUS	transcript	19061648	19062611	.	-	.	transcript_id "Ledus.S1G211200.t1"; gene_id "Ledus.S1G211200"
Ledus.S1	AUGUSTUS	stop_codon	19061645	19061647	.	-	0	transcript_id "Ledus.S1G211200.t1"; gene_id "Ledus.S1G211200"
Ledus.S1	AUGUSTUS	CDS	19061648	19061724	1	-	2	transcript_id "Ledus.S1G211200.t1"; gene_id "Ledus.S1G211200"
Ledus.S1	AUGUSTUS	exon	19061648	19061724	.	-	.	transcript_id "Ledus.S1G211200.t1"; gene_id "Ledus.S1G211200"
Ledus.S1	AUGUSTUS	intron	19061725	19061849	.	-	.	transcript_id "Ledus.S1G211200.t1"; gene_id "Ledus.S1G211200"
Ledus.S1	AUGUSTUS	CDS	19061850	19062060	1	-	0	transcript_id "Ledus.S1G211200.t1"; gene_id "Ledus.S1G211200"
Ledus.S1	AUGUSTUS	exon	19061850	19062060	.	-	.	transcript_id "Ledus.S1G211200.t1"; gene_id "Ledus.S1G211200"
Ledus.S1	AUGUSTUS	intron	19062061	19062149	.	-	.	transcript_id "Ledus.S1G211200.t1"; gene_id "Ledus.S1G211200"
Ledus.S1	AUGUSTUS	CDS	19062150	19062611	1	-	0	transcript_id "Ledus.S1G211200.t1"; gene_id "Ledus.S1G211200"
Ledus.S1	AUGUSTUS	exon	19062150	19062611	.	-	.	transcript_id "Ledus.S1G211200.t1"; gene_id "Ledus.S1G211200"
Ledus.S1	AUGUSTUS	start_codon	19062609	19062611	.	-	0	transcript_id "Ledus.S1G211200.t1"; gene_id "Ledus.S1G211200"
# This transcript jg6793.t2 is derived from g4237.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6794.t1 is derived from g4238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34236366	34236745	.	+	.	Ledus.S1G421500
Ledus.S1	AUGUSTUS	transcript	34236366	34236745	.	+	.	transcript_id "Ledus.S1G421500.t1"; gene_id "Ledus.S1G421500"
Ledus.S1	AUGUSTUS	start_codon	34236366	34236368	.	+	0	transcript_id "Ledus.S1G421500.t1"; gene_id "Ledus.S1G421500"
Ledus.S1	AUGUSTUS	CDS	34236366	34236380	0.55	+	0	transcript_id "Ledus.S1G421500.t1"; gene_id "Ledus.S1G421500"
Ledus.S1	AUGUSTUS	exon	34236366	34236380	.	+	.	transcript_id "Ledus.S1G421500.t1"; gene_id "Ledus.S1G421500"
Ledus.S1	AUGUSTUS	intron	34236381	34236520	.	+	.	transcript_id "Ledus.S1G421500.t1"; gene_id "Ledus.S1G421500"
Ledus.S1	AUGUSTUS	CDS	34236521	34236745	0.43	+	0	transcript_id "Ledus.S1G421500.t1"; gene_id "Ledus.S1G421500"
Ledus.S1	AUGUSTUS	exon	34236521	34236745	.	+	.	transcript_id "Ledus.S1G421500.t1"; gene_id "Ledus.S1G421500"
Ledus.S1	AUGUSTUS	stop_codon	34236746	34236748	.	+	0	transcript_id "Ledus.S1G421500.t1"; gene_id "Ledus.S1G421500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10751.t1 is derived from g11782.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17488271	17491428	.	+	.	Ledus.S3G222800
Ledus.S3	AUGUSTUS	transcript	17488271	17491428	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	start_codon	17488271	17488273	.	+	0	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17488271	17488288	0.61	+	0	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17488271	17488288	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17488289	17488365	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17488366	17488568	0.6	+	0	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17488366	17488568	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17488569	17488659	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17488660	17488730	1	+	1	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17488660	17488730	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17488731	17488846	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17488847	17488935	0.82	+	2	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17488847	17488935	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17488936	17489031	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17489032	17489085	1	+	0	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17489032	17489085	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17489086	17489185	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17489186	17489281	1	+	0	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17489186	17489281	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17489282	17489373	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17489374	17489450	0.91	+	0	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17489374	17489450	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17489451	17489556	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17489557	17489644	0.91	+	1	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17489557	17489644	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17489645	17489722	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17489723	17489743	1	+	0	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17489723	17489743	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17489744	17489857	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17489858	17489932	1	+	0	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17489858	17489932	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17489933	17490026	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17490027	17490307	0.76	+	0	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17490027	17490307	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17490308	17490441	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17490442	17490511	1	+	1	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17490442	17490511	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17490512	17490603	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17490604	17490699	1	+	0	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17490604	17490699	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17490700	17490782	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17490783	17490973	0.64	+	0	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17490783	17490973	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17490974	17491163	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17491164	17491175	0.68	+	1	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17491164	17491175	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17491176	17491355	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17491356	17491428	0.67	+	1	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17491356	17491428	.	+	.	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	stop_codon	17491429	17491431	.	+	0	transcript_id "Ledus.S3G222800.t1"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	transcript	17488271	17491428	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	start_codon	17488271	17488273	.	+	0	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17488271	17488288	0.48	+	0	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17488271	17488288	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17488289	17488365	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17488366	17488568	0.4	+	0	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17488366	17488568	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17488569	17488659	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17488660	17488734	0.46	+	1	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17488660	17488734	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17488735	17488935	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17488936	17488942	0.46	+	1	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17488936	17488942	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17488943	17489031	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17489032	17489085	1	+	0	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17489032	17489085	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17489086	17489185	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17489186	17489281	1	+	0	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17489186	17489281	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17489282	17489373	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17489374	17489450	0.92	+	0	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17489374	17489450	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17489451	17489556	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17489557	17489644	0.92	+	1	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17489557	17489644	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17489645	17489722	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17489723	17489743	1	+	0	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17489723	17489743	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17489744	17489857	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17489858	17489932	1	+	0	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17489858	17489932	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17489933	17490026	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17490027	17490307	0.76	+	0	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17490027	17490307	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17490308	17490441	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17490442	17490511	1	+	1	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17490442	17490511	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17490512	17490603	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17490604	17490699	1	+	0	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17490604	17490699	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17490700	17490782	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17490783	17490973	0.69	+	0	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17490783	17490973	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17490974	17491163	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17491164	17491175	0.7	+	1	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17491164	17491175	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	intron	17491176	17491355	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	CDS	17491356	17491428	0.68	+	1	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	exon	17491356	17491428	.	+	.	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
Ledus.S3	AUGUSTUS	stop_codon	17491429	17491431	.	+	0	transcript_id "Ledus.S3G222800.t2"; gene_id "Ledus.S3G222800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10232.t1 is derived from g11262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13716740	13717753	.	-	.	Ledus.S3G170900
Ledus.S3	AUGUSTUS	transcript	13716740	13717753	.	-	.	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	stop_codon	13716737	13716739	.	-	0	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	CDS	13716740	13716844	0.76	-	0	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	exon	13716740	13716844	.	-	.	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	intron	13716845	13716928	.	-	.	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	CDS	13716929	13716980	1	-	1	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	exon	13716929	13716980	.	-	.	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	intron	13716981	13717069	.	-	.	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	CDS	13717070	13717116	0.95	-	0	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	exon	13717070	13717116	.	-	.	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	intron	13717117	13717344	.	-	.	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	CDS	13717345	13717421	1	-	2	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	exon	13717345	13717421	.	-	.	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	intron	13717422	13717629	.	-	.	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	CDS	13717630	13717753	0.62	-	0	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	exon	13717630	13717753	.	-	.	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
Ledus.S3	AUGUSTUS	start_codon	13717751	13717753	.	-	0	transcript_id "Ledus.S3G170900.t1"; gene_id "Ledus.S3G170900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9823.t1 is derived from g10853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10206019	10206617	.	+	.	Ledus.S3G130000
Ledus.S3	AUGUSTUS	transcript	10206019	10206617	.	+	.	transcript_id "Ledus.S3G130000.t1"; gene_id "Ledus.S3G130000"
Ledus.S3	AUGUSTUS	start_codon	10206019	10206021	.	+	0	transcript_id "Ledus.S3G130000.t1"; gene_id "Ledus.S3G130000"
Ledus.S3	AUGUSTUS	CDS	10206019	10206186	0.22	+	0	transcript_id "Ledus.S3G130000.t1"; gene_id "Ledus.S3G130000"
Ledus.S3	AUGUSTUS	exon	10206019	10206186	.	+	.	transcript_id "Ledus.S3G130000.t1"; gene_id "Ledus.S3G130000"
Ledus.S3	AUGUSTUS	intron	10206187	10206344	.	+	.	transcript_id "Ledus.S3G130000.t1"; gene_id "Ledus.S3G130000"
Ledus.S3	AUGUSTUS	CDS	10206345	10206617	0.24	+	0	transcript_id "Ledus.S3G130000.t1"; gene_id "Ledus.S3G130000"
Ledus.S3	AUGUSTUS	exon	10206345	10206617	.	+	.	transcript_id "Ledus.S3G130000.t1"; gene_id "Ledus.S3G130000"
Ledus.S3	AUGUSTUS	stop_codon	10206618	10206620	.	+	0	transcript_id "Ledus.S3G130000.t1"; gene_id "Ledus.S3G130000"
# This transcript jg5835.t2 is derived from g3277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5836.t1 is derived from g3278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27228752	27229873	.	-	.	Ledus.S1G325700
Ledus.S1	AUGUSTUS	transcript	27228752	27229873	.	-	.	transcript_id "Ledus.S1G325700.t1"; gene_id "Ledus.S1G325700"
Ledus.S1	AUGUSTUS	stop_codon	27228749	27228751	.	-	0	transcript_id "Ledus.S1G325700.t1"; gene_id "Ledus.S1G325700"
Ledus.S1	AUGUSTUS	CDS	27228752	27229873	0.85	-	0	transcript_id "Ledus.S1G325700.t1"; gene_id "Ledus.S1G325700"
Ledus.S1	AUGUSTUS	exon	27228752	27229873	.	-	.	transcript_id "Ledus.S1G325700.t1"; gene_id "Ledus.S1G325700"
Ledus.S1	AUGUSTUS	start_codon	27229871	27229873	.	-	0	transcript_id "Ledus.S1G325700.t1"; gene_id "Ledus.S1G325700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5087.t1 is derived from g2526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21494554	21495897	.	-	.	Ledus.S1G250800
Ledus.S1	AUGUSTUS	transcript	21494554	21495897	.	-	.	transcript_id "Ledus.S1G250800.t1"; gene_id "Ledus.S1G250800"
Ledus.S1	AUGUSTUS	stop_codon	21494551	21494553	.	-	0	transcript_id "Ledus.S1G250800.t1"; gene_id "Ledus.S1G250800"
Ledus.S1	AUGUSTUS	CDS	21494554	21495897	0.74	-	0	transcript_id "Ledus.S1G250800.t1"; gene_id "Ledus.S1G250800"
Ledus.S1	AUGUSTUS	exon	21494554	21495897	.	-	.	transcript_id "Ledus.S1G250800.t1"; gene_id "Ledus.S1G250800"
Ledus.S1	AUGUSTUS	start_codon	21495895	21495897	.	-	0	transcript_id "Ledus.S1G250800.t1"; gene_id "Ledus.S1G250800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3250.t1 is derived from g685.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7130626	7131372	.	-	.	Ledus.S1G067100
Ledus.S1	AUGUSTUS	transcript	7130626	7131372	.	-	.	transcript_id "Ledus.S1G067100.t1"; gene_id "Ledus.S1G067100"
Ledus.S1	AUGUSTUS	stop_codon	7130623	7130625	.	-	0	transcript_id "Ledus.S1G067100.t1"; gene_id "Ledus.S1G067100"
Ledus.S1	AUGUSTUS	CDS	7130626	7130850	1	-	0	transcript_id "Ledus.S1G067100.t1"; gene_id "Ledus.S1G067100"
Ledus.S1	AUGUSTUS	exon	7130626	7130850	.	-	.	transcript_id "Ledus.S1G067100.t1"; gene_id "Ledus.S1G067100"
Ledus.S1	AUGUSTUS	intron	7130851	7131019	.	-	.	transcript_id "Ledus.S1G067100.t1"; gene_id "Ledus.S1G067100"
Ledus.S1	AUGUSTUS	CDS	7131020	7131235	0.91	-	0	transcript_id "Ledus.S1G067100.t1"; gene_id "Ledus.S1G067100"
Ledus.S1	AUGUSTUS	exon	7131020	7131235	.	-	.	transcript_id "Ledus.S1G067100.t1"; gene_id "Ledus.S1G067100"
Ledus.S1	AUGUSTUS	intron	7131236	7131312	.	-	.	transcript_id "Ledus.S1G067100.t1"; gene_id "Ledus.S1G067100"
Ledus.S1	AUGUSTUS	CDS	7131313	7131372	0.97	-	0	transcript_id "Ledus.S1G067100.t1"; gene_id "Ledus.S1G067100"
Ledus.S1	AUGUSTUS	exon	7131313	7131372	.	-	.	transcript_id "Ledus.S1G067100.t1"; gene_id "Ledus.S1G067100"
Ledus.S1	AUGUSTUS	start_codon	7131370	7131372	.	-	0	transcript_id "Ledus.S1G067100.t1"; gene_id "Ledus.S1G067100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1408.t1 is derived from g8269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9917745	9921573	.	-	.	Ledus.S2G129000
Ledus.S2	AUGUSTUS	transcript	9917745	9921573	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	stop_codon	9917742	9917744	.	-	0	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9917745	9917809	0.69	-	2	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9917745	9917809	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	intron	9917810	9917896	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9917897	9918170	0.99	-	0	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9917897	9918170	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	intron	9918171	9918258	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9918259	9918501	1	-	0	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9918259	9918501	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	intron	9918502	9918635	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9918636	9918766	1	-	2	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9918636	9918766	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	intron	9918767	9918982	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9918983	9919077	1	-	1	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9918983	9919077	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	intron	9919078	9919168	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9919169	9919335	1	-	0	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9919169	9919335	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	intron	9919336	9919428	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9919429	9919563	1	-	0	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9919429	9919563	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	intron	9919564	9919754	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9919755	9919907	1	-	0	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9919755	9919907	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	intron	9919908	9920001	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9920002	9920084	1	-	2	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9920002	9920084	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	intron	9920085	9920186	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9920187	9920204	0.99	-	2	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9920187	9920204	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	intron	9920205	9920346	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9920347	9920451	1	-	2	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9920347	9920451	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	intron	9920452	9920631	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9920632	9920830	1	-	0	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9920632	9920830	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	intron	9920831	9921483	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	CDS	9921484	9921573	0.82	-	0	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	exon	9921484	9921573	.	-	.	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
Ledus.S2	AUGUSTUS	start_codon	9921571	9921573	.	-	0	transcript_id "Ledus.S2G129000.t1"; gene_id "Ledus.S2G129000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg855.t1 is derived from g7716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5697132	5698734	.	-	.	Ledus.S2G073700
Ledus.S2	AUGUSTUS	transcript	5697132	5698734	.	-	.	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	stop_codon	5697129	5697131	.	-	0	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	CDS	5697132	5697218	1	-	0	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	exon	5697132	5697218	.	-	.	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	intron	5697219	5697302	.	-	.	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	CDS	5697303	5697401	1	-	0	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	exon	5697303	5697401	.	-	.	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	intron	5697402	5697617	.	-	.	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	CDS	5697618	5697707	1	-	0	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	exon	5697618	5697707	.	-	.	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	intron	5697708	5697844	.	-	.	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	CDS	5697845	5697965	1	-	1	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	exon	5697845	5697965	.	-	.	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	intron	5697966	5698666	.	-	.	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	CDS	5698667	5698734	1	-	0	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	exon	5698667	5698734	.	-	.	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
Ledus.S2	AUGUSTUS	start_codon	5698732	5698734	.	-	0	transcript_id "Ledus.S2G073700.t1"; gene_id "Ledus.S2G073700"
# This transcript jg12303.t2 is derived from g5923.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12304.t1 is derived from g5925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11129465	11132152	.	+	.	Ledus.S4G146000
Ledus.S4	AUGUSTUS	transcript	11129465	11132152	.	+	.	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	start_codon	11129465	11129467	.	+	0	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	CDS	11129465	11129536	0.8	+	0	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	exon	11129465	11129536	.	+	.	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	intron	11129537	11129759	.	+	.	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	CDS	11129760	11130213	0.59	+	0	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	exon	11129760	11130213	.	+	.	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	intron	11130214	11130324	.	+	.	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	CDS	11130325	11131768	0.93	+	2	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	exon	11130325	11131768	.	+	.	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	intron	11131769	11131895	.	+	.	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	CDS	11131896	11132022	0.69	+	1	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	exon	11131896	11132022	.	+	.	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	intron	11132023	11132110	.	+	.	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	CDS	11132111	11132152	1	+	0	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	exon	11132111	11132152	.	+	.	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
Ledus.S4	AUGUSTUS	stop_codon	11132153	11132155	.	+	0	transcript_id "Ledus.S4G146000.t1"; gene_id "Ledus.S4G146000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13147.t1 is derived from g6957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7383285	7383584	.	-	.	Ledus.S6G020900
Ledus.S6	AUGUSTUS	transcript	7383285	7383584	.	-	.	transcript_id "Ledus.S6G020900.t1"; gene_id "Ledus.S6G020900"
Ledus.S6	AUGUSTUS	stop_codon	7383282	7383284	.	-	0	transcript_id "Ledus.S6G020900.t1"; gene_id "Ledus.S6G020900"
Ledus.S6	AUGUSTUS	CDS	7383285	7383584	0.99	-	0	transcript_id "Ledus.S6G020900.t1"; gene_id "Ledus.S6G020900"
Ledus.S6	AUGUSTUS	exon	7383285	7383584	.	-	.	transcript_id "Ledus.S6G020900.t1"; gene_id "Ledus.S6G020900"
Ledus.S6	AUGUSTUS	start_codon	7383582	7383584	.	-	0	transcript_id "Ledus.S6G020900.t1"; gene_id "Ledus.S6G020900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4393.t1 is derived from g1829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16781139	16782539	.	-	.	Ledus.S1G181400
Ledus.S1	AUGUSTUS	transcript	16781139	16782539	.	-	.	transcript_id "Ledus.S1G181400.t1"; gene_id "Ledus.S1G181400"
Ledus.S1	AUGUSTUS	stop_codon	16781136	16781138	.	-	0	transcript_id "Ledus.S1G181400.t1"; gene_id "Ledus.S1G181400"
Ledus.S1	AUGUSTUS	CDS	16781139	16782539	0.92	-	0	transcript_id "Ledus.S1G181400.t1"; gene_id "Ledus.S1G181400"
Ledus.S1	AUGUSTUS	exon	16781139	16782539	.	-	.	transcript_id "Ledus.S1G181400.t1"; gene_id "Ledus.S1G181400"
Ledus.S1	AUGUSTUS	start_codon	16782537	16782539	.	-	0	transcript_id "Ledus.S1G181400.t1"; gene_id "Ledus.S1G181400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3746.t1 is derived from g1182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11541615	11549799	.	+	.	Ledus.S1G116700
Ledus.S1	AUGUSTUS	transcript	11541615	11549799	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	start_codon	11541615	11541617	.	+	0	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	CDS	11541615	11542023	0.4	+	0	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	exon	11541615	11542023	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	intron	11542024	11542370	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	CDS	11542371	11542498	1	+	2	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	exon	11542371	11542498	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	intron	11542499	11542968	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	CDS	11542969	11543028	1	+	0	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	exon	11542969	11543028	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	intron	11543029	11544262	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	CDS	11544263	11544412	1	+	0	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	exon	11544263	11544412	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	intron	11544413	11544595	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	CDS	11544596	11544751	1	+	0	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	exon	11544596	11544751	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	intron	11544752	11546220	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	CDS	11546221	11546358	1	+	0	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	exon	11546221	11546358	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	intron	11546359	11546446	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	CDS	11546447	11546520	1	+	0	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	exon	11546447	11546520	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	intron	11546521	11548950	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	CDS	11548951	11549052	1	+	1	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	exon	11548951	11549052	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	intron	11549053	11549205	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	CDS	11549206	11549321	1	+	1	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	exon	11549206	11549321	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	intron	11549322	11549500	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	CDS	11549501	11549799	0.95	+	2	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	exon	11549501	11549799	.	+	.	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
Ledus.S1	AUGUSTUS	stop_codon	11549800	11549802	.	+	0	transcript_id "Ledus.S1G116700.t1"; gene_id "Ledus.S1G116700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4042.t1 is derived from g1478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14297442	14297993	.	+	.	Ledus.S1G146300
Ledus.S1	AUGUSTUS	transcript	14297442	14297993	.	+	.	transcript_id "Ledus.S1G146300.t1"; gene_id "Ledus.S1G146300"
Ledus.S1	AUGUSTUS	start_codon	14297442	14297444	.	+	0	transcript_id "Ledus.S1G146300.t1"; gene_id "Ledus.S1G146300"
Ledus.S1	AUGUSTUS	CDS	14297442	14297776	0.48	+	0	transcript_id "Ledus.S1G146300.t1"; gene_id "Ledus.S1G146300"
Ledus.S1	AUGUSTUS	exon	14297442	14297776	.	+	.	transcript_id "Ledus.S1G146300.t1"; gene_id "Ledus.S1G146300"
Ledus.S1	AUGUSTUS	intron	14297777	14297905	.	+	.	transcript_id "Ledus.S1G146300.t1"; gene_id "Ledus.S1G146300"
Ledus.S1	AUGUSTUS	CDS	14297906	14297993	0.89	+	1	transcript_id "Ledus.S1G146300.t1"; gene_id "Ledus.S1G146300"
Ledus.S1	AUGUSTUS	exon	14297906	14297993	.	+	.	transcript_id "Ledus.S1G146300.t1"; gene_id "Ledus.S1G146300"
Ledus.S1	AUGUSTUS	stop_codon	14297994	14297996	.	+	0	transcript_id "Ledus.S1G146300.t1"; gene_id "Ledus.S1G146300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1970.t1 is derived from g8833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13931649	13932002	.	+	.	Ledus.S2G185200
Ledus.S2	AUGUSTUS	transcript	13931649	13932002	.	+	.	transcript_id "Ledus.S2G185200.t1"; gene_id "Ledus.S2G185200"
Ledus.S2	AUGUSTUS	start_codon	13931649	13931651	.	+	0	transcript_id "Ledus.S2G185200.t1"; gene_id "Ledus.S2G185200"
Ledus.S2	AUGUSTUS	CDS	13931649	13932002	0.63	+	0	transcript_id "Ledus.S2G185200.t1"; gene_id "Ledus.S2G185200"
Ledus.S2	AUGUSTUS	exon	13931649	13932002	.	+	.	transcript_id "Ledus.S2G185200.t1"; gene_id "Ledus.S2G185200"
Ledus.S2	AUGUSTUS	stop_codon	13932003	13932005	.	+	0	transcript_id "Ledus.S2G185200.t1"; gene_id "Ledus.S2G185200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3646.t1 is derived from g1082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10368903	10369535	.	+	.	Ledus.S1G106700
Ledus.S1	AUGUSTUS	transcript	10368903	10369535	.	+	.	transcript_id "Ledus.S1G106700.t1"; gene_id "Ledus.S1G106700"
Ledus.S1	AUGUSTUS	start_codon	10368903	10368905	.	+	0	transcript_id "Ledus.S1G106700.t1"; gene_id "Ledus.S1G106700"
Ledus.S1	AUGUSTUS	CDS	10368903	10369535	0.59	+	0	transcript_id "Ledus.S1G106700.t1"; gene_id "Ledus.S1G106700"
Ledus.S1	AUGUSTUS	exon	10368903	10369535	.	+	.	transcript_id "Ledus.S1G106700.t1"; gene_id "Ledus.S1G106700"
Ledus.S1	AUGUSTUS	stop_codon	10369536	10369538	.	+	0	transcript_id "Ledus.S1G106700.t1"; gene_id "Ledus.S1G106700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1697.t1 is derived from g8558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11949458	11950478	.	+	.	Ledus.S2G157900
Ledus.S2	AUGUSTUS	transcript	11949458	11950478	.	+	.	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	start_codon	11949458	11949460	.	+	0	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	CDS	11949458	11949587	1	+	0	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	exon	11949458	11949587	.	+	.	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	intron	11949588	11949680	.	+	.	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	CDS	11949681	11949832	0.83	+	2	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	exon	11949681	11949832	.	+	.	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	intron	11949833	11949923	.	+	.	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	CDS	11949924	11950173	1	+	0	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	exon	11949924	11950173	.	+	.	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	intron	11950174	11950257	.	+	.	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	CDS	11950258	11950478	0.97	+	2	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	exon	11950258	11950478	.	+	.	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
Ledus.S2	AUGUSTUS	stop_codon	11950479	11950481	.	+	0	transcript_id "Ledus.S2G157900.t1"; gene_id "Ledus.S2G157900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12117.t1 is derived from g5736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9635285	9635752	.	+	.	Ledus.S4G127300
Ledus.S4	AUGUSTUS	transcript	9635285	9635752	.	+	.	transcript_id "Ledus.S4G127300.t1"; gene_id "Ledus.S4G127300"
Ledus.S4	AUGUSTUS	start_codon	9635285	9635287	.	+	0	transcript_id "Ledus.S4G127300.t1"; gene_id "Ledus.S4G127300"
Ledus.S4	AUGUSTUS	CDS	9635285	9635752	0.7	+	0	transcript_id "Ledus.S4G127300.t1"; gene_id "Ledus.S4G127300"
Ledus.S4	AUGUSTUS	exon	9635285	9635752	.	+	.	transcript_id "Ledus.S4G127300.t1"; gene_id "Ledus.S4G127300"
Ledus.S4	AUGUSTUS	stop_codon	9635753	9635755	.	+	0	transcript_id "Ledus.S4G127300.t1"; gene_id "Ledus.S4G127300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11908.t1 is derived from g5527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7689508	7692673	.	+	.	Ledus.S4G106400
Ledus.S4	AUGUSTUS	transcript	7689508	7692673	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	start_codon	7689508	7689510	.	+	0	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	CDS	7689508	7689560	0.24	+	0	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	exon	7689508	7689560	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	intron	7689561	7690198	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	CDS	7690199	7690278	0.93	+	1	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	exon	7690199	7690278	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	intron	7690279	7690388	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	CDS	7690389	7690708	0.97	+	2	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	exon	7690389	7690708	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	intron	7690709	7690847	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	CDS	7690848	7690910	1	+	0	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	exon	7690848	7690910	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	intron	7690911	7691034	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	CDS	7691035	7691053	1	+	0	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	exon	7691035	7691053	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	intron	7691054	7691188	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	CDS	7691189	7691287	1	+	2	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	exon	7691189	7691287	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	intron	7691288	7691402	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	CDS	7691403	7691480	1	+	2	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	exon	7691403	7691480	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	intron	7691481	7691660	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	CDS	7691661	7691905	1	+	2	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	exon	7691661	7691905	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	intron	7691906	7692149	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	CDS	7692150	7692357	1	+	0	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	exon	7692150	7692357	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	intron	7692358	7692494	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	CDS	7692495	7692673	1	+	2	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	exon	7692495	7692673	.	+	.	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
Ledus.S4	AUGUSTUS	stop_codon	7692674	7692676	.	+	0	transcript_id "Ledus.S4G106400.t1"; gene_id "Ledus.S4G106400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10788.t1 is derived from g11820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17726966	17728148	.	-	.	Ledus.S3G226500
Ledus.S3	AUGUSTUS	transcript	17726966	17728148	.	-	.	transcript_id "Ledus.S3G226500.t1"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	stop_codon	17726963	17726965	.	-	0	transcript_id "Ledus.S3G226500.t1"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	CDS	17726966	17727277	0.95	-	0	transcript_id "Ledus.S3G226500.t1"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	exon	17726966	17727277	.	-	.	transcript_id "Ledus.S3G226500.t1"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	intron	17727278	17727446	.	-	.	transcript_id "Ledus.S3G226500.t1"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	CDS	17727447	17727616	0.97	-	2	transcript_id "Ledus.S3G226500.t1"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	exon	17727447	17727616	.	-	.	transcript_id "Ledus.S3G226500.t1"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	intron	17727617	17727787	.	-	.	transcript_id "Ledus.S3G226500.t1"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	CDS	17727788	17728148	0.97	-	0	transcript_id "Ledus.S3G226500.t1"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	exon	17727788	17728148	.	-	.	transcript_id "Ledus.S3G226500.t1"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	start_codon	17728146	17728148	.	-	0	transcript_id "Ledus.S3G226500.t1"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	transcript	17727768	17728148	.	-	.	transcript_id "Ledus.S3G226500.t2"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	stop_codon	17727765	17727767	.	-	0	transcript_id "Ledus.S3G226500.t2"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	CDS	17727768	17728148	0.67	-	0	transcript_id "Ledus.S3G226500.t2"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	exon	17727768	17728148	.	-	.	transcript_id "Ledus.S3G226500.t2"; gene_id "Ledus.S3G226500"
Ledus.S3	AUGUSTUS	start_codon	17728146	17728148	.	-	0	transcript_id "Ledus.S3G226500.t2"; gene_id "Ledus.S3G226500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg916.t1 is derived from g7777.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6164876	6167320	.	+	.	Ledus.S2G079800
Ledus.S2	AUGUSTUS	transcript	6164876	6167320	.	+	.	transcript_id "Ledus.S2G079800.t1"; gene_id "Ledus.S2G079800"
Ledus.S2	AUGUSTUS	start_codon	6164876	6164878	.	+	0	transcript_id "Ledus.S2G079800.t1"; gene_id "Ledus.S2G079800"
Ledus.S2	AUGUSTUS	CDS	6164876	6167320	1	+	0	transcript_id "Ledus.S2G079800.t1"; gene_id "Ledus.S2G079800"
Ledus.S2	AUGUSTUS	exon	6164876	6167320	.	+	.	transcript_id "Ledus.S2G079800.t1"; gene_id "Ledus.S2G079800"
Ledus.S2	AUGUSTUS	stop_codon	6167321	6167323	.	+	0	transcript_id "Ledus.S2G079800.t1"; gene_id "Ledus.S2G079800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1738.t1 is derived from g8600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12252627	12253803	.	-	.	Ledus.S2G162000
Ledus.S2	AUGUSTUS	transcript	12252627	12253803	.	-	.	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	stop_codon	12252624	12252626	.	-	0	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	CDS	12252627	12252691	0.88	-	2	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	exon	12252627	12252691	.	-	.	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	intron	12252692	12252811	.	-	.	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	CDS	12252812	12253047	0.93	-	1	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	exon	12252812	12253047	.	-	.	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	intron	12253048	12253126	.	-	.	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	CDS	12253127	12253494	1	-	0	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	exon	12253127	12253494	.	-	.	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	intron	12253495	12253569	.	-	.	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	CDS	12253570	12253803	0.97	-	0	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	exon	12253570	12253803	.	-	.	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
Ledus.S2	AUGUSTUS	start_codon	12253801	12253803	.	-	0	transcript_id "Ledus.S2G162000.t1"; gene_id "Ledus.S2G162000"
# This transcript jg8638.t2 is derived from g9668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8639.t1 is derived from g9669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1000204	1002642	.	-	.	Ledus.S3G011600
Ledus.S3	AUGUSTUS	transcript	1000204	1002642	.	-	.	transcript_id "Ledus.S3G011600.t1"; gene_id "Ledus.S3G011600"
Ledus.S3	AUGUSTUS	stop_codon	1000201	1000203	.	-	0	transcript_id "Ledus.S3G011600.t1"; gene_id "Ledus.S3G011600"
Ledus.S3	AUGUSTUS	CDS	1000204	1000488	0.88	-	0	transcript_id "Ledus.S3G011600.t1"; gene_id "Ledus.S3G011600"
Ledus.S3	AUGUSTUS	exon	1000204	1000488	.	-	.	transcript_id "Ledus.S3G011600.t1"; gene_id "Ledus.S3G011600"
Ledus.S3	AUGUSTUS	intron	1000489	1000659	.	-	.	transcript_id "Ledus.S3G011600.t1"; gene_id "Ledus.S3G011600"
Ledus.S3	AUGUSTUS	CDS	1000660	1002036	0.88	-	0	transcript_id "Ledus.S3G011600.t1"; gene_id "Ledus.S3G011600"
Ledus.S3	AUGUSTUS	exon	1000660	1002036	.	-	.	transcript_id "Ledus.S3G011600.t1"; gene_id "Ledus.S3G011600"
Ledus.S3	AUGUSTUS	intron	1002037	1002141	.	-	.	transcript_id "Ledus.S3G011600.t1"; gene_id "Ledus.S3G011600"
Ledus.S3	AUGUSTUS	CDS	1002142	1002642	0.49	-	0	transcript_id "Ledus.S3G011600.t1"; gene_id "Ledus.S3G011600"
Ledus.S3	AUGUSTUS	exon	1002142	1002642	.	-	.	transcript_id "Ledus.S3G011600.t1"; gene_id "Ledus.S3G011600"
Ledus.S3	AUGUSTUS	start_codon	1002640	1002642	.	-	0	transcript_id "Ledus.S3G011600.t1"; gene_id "Ledus.S3G011600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6252.t1 is derived from g3695.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29909037	29909971	.	+	.	Ledus.S1G367300
Ledus.S1	AUGUSTUS	transcript	29909037	29909971	.	+	.	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	start_codon	29909037	29909039	.	+	0	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	CDS	29909037	29909051	1	+	0	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	exon	29909037	29909051	.	+	.	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	intron	29909052	29909248	.	+	.	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	CDS	29909249	29909302	0.76	+	0	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	exon	29909249	29909302	.	+	.	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	intron	29909303	29909389	.	+	.	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	CDS	29909390	29909566	0.75	+	0	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	exon	29909390	29909566	.	+	.	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	intron	29909567	29909965	.	+	.	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	CDS	29909966	29909971	1	+	0	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	exon	29909966	29909971	.	+	.	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
Ledus.S1	AUGUSTUS	stop_codon	29909972	29909974	.	+	0	transcript_id "Ledus.S1G367300.t1"; gene_id "Ledus.S1G367300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11616.t1 is derived from g5234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5539162	5540197	.	+	.	Ledus.S4G077200
Ledus.S4	AUGUSTUS	transcript	5539162	5540197	.	+	.	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	start_codon	5539162	5539164	.	+	0	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	CDS	5539162	5539224	0.99	+	0	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	exon	5539162	5539224	.	+	.	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	intron	5539225	5539299	.	+	.	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	CDS	5539300	5539395	0.98	+	0	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	exon	5539300	5539395	.	+	.	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	intron	5539396	5539508	.	+	.	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	CDS	5539509	5539570	0.52	+	0	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	exon	5539509	5539570	.	+	.	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	intron	5539571	5539675	.	+	.	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	CDS	5539676	5539809	0.52	+	1	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	exon	5539676	5539809	.	+	.	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	intron	5539810	5539963	.	+	.	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	CDS	5539964	5540048	0.95	+	2	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	exon	5539964	5540048	.	+	.	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	intron	5540049	5540154	.	+	.	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	CDS	5540155	5540197	0.95	+	1	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	exon	5540155	5540197	.	+	.	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
Ledus.S4	AUGUSTUS	stop_codon	5540198	5540200	.	+	0	transcript_id "Ledus.S4G077200.t1"; gene_id "Ledus.S4G077200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6136.t1 is derived from g3579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29157903	29162160	.	-	.	Ledus.S1G355700
Ledus.S1	AUGUSTUS	transcript	29157903	29162160	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	stop_codon	29157900	29157902	.	-	0	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	CDS	29157903	29158175	1	-	0	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	exon	29157903	29158175	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	intron	29158176	29158267	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	CDS	29158268	29158398	1	-	2	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	exon	29158268	29158398	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	intron	29158399	29158492	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	CDS	29158493	29158559	1	-	0	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	exon	29158493	29158559	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	intron	29158560	29158645	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	CDS	29158646	29159034	1	-	2	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	exon	29158646	29159034	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	intron	29159035	29159166	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	CDS	29159167	29159247	1	-	2	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	exon	29159167	29159247	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	intron	29159248	29159540	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	CDS	29159541	29159610	1	-	0	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	exon	29159541	29159610	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	intron	29159611	29159857	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	CDS	29159858	29159949	1	-	2	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	exon	29159858	29159949	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	intron	29159950	29160031	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	CDS	29160032	29160175	0.99	-	2	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	exon	29160032	29160175	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	intron	29160176	29160287	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	CDS	29160288	29160336	0.93	-	0	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	exon	29160288	29160336	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	intron	29160337	29160456	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	CDS	29160457	29162160	0.73	-	0	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	exon	29160457	29162160	.	-	.	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
Ledus.S1	AUGUSTUS	start_codon	29162158	29162160	.	-	0	transcript_id "Ledus.S1G355700.t1"; gene_id "Ledus.S1G355700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7536.t1 is derived from g12207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3701503	3702420	.	-	.	Ledus.S5G031400
Ledus.S5	AUGUSTUS	transcript	3701503	3702420	.	-	.	transcript_id "Ledus.S5G031400.t1"; gene_id "Ledus.S5G031400"
Ledus.S5	AUGUSTUS	stop_codon	3701500	3701502	.	-	0	transcript_id "Ledus.S5G031400.t1"; gene_id "Ledus.S5G031400"
Ledus.S5	AUGUSTUS	CDS	3701503	3701618	0.36	-	2	transcript_id "Ledus.S5G031400.t1"; gene_id "Ledus.S5G031400"
Ledus.S5	AUGUSTUS	exon	3701503	3701618	.	-	.	transcript_id "Ledus.S5G031400.t1"; gene_id "Ledus.S5G031400"
Ledus.S5	AUGUSTUS	intron	3701619	3701996	.	-	.	transcript_id "Ledus.S5G031400.t1"; gene_id "Ledus.S5G031400"
Ledus.S5	AUGUSTUS	CDS	3701997	3702420	0.4	-	0	transcript_id "Ledus.S5G031400.t1"; gene_id "Ledus.S5G031400"
Ledus.S5	AUGUSTUS	exon	3701997	3702420	.	-	.	transcript_id "Ledus.S5G031400.t1"; gene_id "Ledus.S5G031400"
Ledus.S5	AUGUSTUS	start_codon	3702418	3702420	.	-	0	transcript_id "Ledus.S5G031400.t1"; gene_id "Ledus.S5G031400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg448.t1 is derived from g7309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2660440	2660703	.	+	.	Ledus.S2G033000
Ledus.S2	AUGUSTUS	transcript	2660440	2660703	.	+	.	transcript_id "Ledus.S2G033000.t1"; gene_id "Ledus.S2G033000"
Ledus.S2	AUGUSTUS	start_codon	2660440	2660442	.	+	0	transcript_id "Ledus.S2G033000.t1"; gene_id "Ledus.S2G033000"
Ledus.S2	AUGUSTUS	CDS	2660440	2660703	0.92	+	0	transcript_id "Ledus.S2G033000.t1"; gene_id "Ledus.S2G033000"
Ledus.S2	AUGUSTUS	exon	2660440	2660703	.	+	.	transcript_id "Ledus.S2G033000.t1"; gene_id "Ledus.S2G033000"
Ledus.S2	AUGUSTUS	stop_codon	2660704	2660706	.	+	0	transcript_id "Ledus.S2G033000.t1"; gene_id "Ledus.S2G033000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12507.t1 is derived from g6128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12557741	12559224	.	+	.	Ledus.S4G166300
Ledus.S4	AUGUSTUS	transcript	12557741	12559224	.	+	.	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	start_codon	12557741	12557743	.	+	0	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	CDS	12557741	12558718	0.38	+	0	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	exon	12557741	12558718	.	+	.	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	intron	12558719	12558816	.	+	.	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	CDS	12558817	12558892	0.53	+	0	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	exon	12558817	12558892	.	+	.	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	intron	12558893	12559041	.	+	.	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	CDS	12559042	12559088	0.98	+	2	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	exon	12559042	12559088	.	+	.	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	intron	12559089	12559188	.	+	.	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	CDS	12559189	12559224	0.98	+	0	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	exon	12559189	12559224	.	+	.	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
Ledus.S4	AUGUSTUS	stop_codon	12559225	12559227	.	+	0	transcript_id "Ledus.S4G166300.t1"; gene_id "Ledus.S4G166300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12402.t1 is derived from g6023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11672230	11673930	.	-	.	Ledus.S4G155800
Ledus.S4	AUGUSTUS	transcript	11672230	11673930	.	-	.	transcript_id "Ledus.S4G155800.t1"; gene_id "Ledus.S4G155800"
Ledus.S4	AUGUSTUS	stop_codon	11672227	11672229	.	-	0	transcript_id "Ledus.S4G155800.t1"; gene_id "Ledus.S4G155800"
Ledus.S4	AUGUSTUS	CDS	11672230	11673045	0.99	-	0	transcript_id "Ledus.S4G155800.t1"; gene_id "Ledus.S4G155800"
Ledus.S4	AUGUSTUS	exon	11672230	11673045	.	-	.	transcript_id "Ledus.S4G155800.t1"; gene_id "Ledus.S4G155800"
Ledus.S4	AUGUSTUS	intron	11673046	11673714	.	-	.	transcript_id "Ledus.S4G155800.t1"; gene_id "Ledus.S4G155800"
Ledus.S4	AUGUSTUS	CDS	11673715	11673930	0.88	-	0	transcript_id "Ledus.S4G155800.t1"; gene_id "Ledus.S4G155800"
Ledus.S4	AUGUSTUS	exon	11673715	11673930	.	-	.	transcript_id "Ledus.S4G155800.t1"; gene_id "Ledus.S4G155800"
Ledus.S4	AUGUSTUS	start_codon	11673928	11673930	.	-	0	transcript_id "Ledus.S4G155800.t1"; gene_id "Ledus.S4G155800"
# This transcript jg5897.t2 is derived from g3340.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5898.t1 is derived from g3341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27687213	27687763	.	-	.	Ledus.S1G331900
Ledus.S1	AUGUSTUS	transcript	27687213	27687763	.	-	.	transcript_id "Ledus.S1G331900.t1"; gene_id "Ledus.S1G331900"
Ledus.S1	AUGUSTUS	stop_codon	27687210	27687212	.	-	0	transcript_id "Ledus.S1G331900.t1"; gene_id "Ledus.S1G331900"
Ledus.S1	AUGUSTUS	CDS	27687213	27687222	1	-	1	transcript_id "Ledus.S1G331900.t1"; gene_id "Ledus.S1G331900"
Ledus.S1	AUGUSTUS	exon	27687213	27687222	.	-	.	transcript_id "Ledus.S1G331900.t1"; gene_id "Ledus.S1G331900"
Ledus.S1	AUGUSTUS	intron	27687223	27687467	.	-	.	transcript_id "Ledus.S1G331900.t1"; gene_id "Ledus.S1G331900"
Ledus.S1	AUGUSTUS	CDS	27687468	27687763	0.41	-	0	transcript_id "Ledus.S1G331900.t1"; gene_id "Ledus.S1G331900"
Ledus.S1	AUGUSTUS	exon	27687468	27687763	.	-	.	transcript_id "Ledus.S1G331900.t1"; gene_id "Ledus.S1G331900"
Ledus.S1	AUGUSTUS	start_codon	27687761	27687763	.	-	0	transcript_id "Ledus.S1G331900.t1"; gene_id "Ledus.S1G331900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11384.t1 is derived from g5002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3927814	3929050	.	-	.	Ledus.S4G054000
Ledus.S4	AUGUSTUS	transcript	3927814	3929050	.	-	.	transcript_id "Ledus.S4G054000.t1"; gene_id "Ledus.S4G054000"
Ledus.S4	AUGUSTUS	stop_codon	3927811	3927813	.	-	0	transcript_id "Ledus.S4G054000.t1"; gene_id "Ledus.S4G054000"
Ledus.S4	AUGUSTUS	CDS	3927814	3928747	0.37	-	1	transcript_id "Ledus.S4G054000.t1"; gene_id "Ledus.S4G054000"
Ledus.S4	AUGUSTUS	exon	3927814	3928747	.	-	.	transcript_id "Ledus.S4G054000.t1"; gene_id "Ledus.S4G054000"
Ledus.S4	AUGUSTUS	intron	3928748	3928877	.	-	.	transcript_id "Ledus.S4G054000.t1"; gene_id "Ledus.S4G054000"
Ledus.S4	AUGUSTUS	CDS	3928878	3929050	0.62	-	0	transcript_id "Ledus.S4G054000.t1"; gene_id "Ledus.S4G054000"
Ledus.S4	AUGUSTUS	exon	3928878	3929050	.	-	.	transcript_id "Ledus.S4G054000.t1"; gene_id "Ledus.S4G054000"
Ledus.S4	AUGUSTUS	start_codon	3929048	3929050	.	-	0	transcript_id "Ledus.S4G054000.t1"; gene_id "Ledus.S4G054000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7724.t1 is derived from g12395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5584534	5586090	.	+	.	Ledus.S5G050200
Ledus.S5	AUGUSTUS	transcript	5584534	5586090	.	+	.	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	start_codon	5584534	5584536	.	+	0	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	CDS	5584534	5584642	0.94	+	0	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	exon	5584534	5584642	.	+	.	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	intron	5584643	5584824	.	+	.	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	CDS	5584825	5584933	1	+	2	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	exon	5584825	5584933	.	+	.	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	intron	5584934	5585179	.	+	.	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	CDS	5585180	5585258	1	+	1	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	exon	5585180	5585258	.	+	.	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	intron	5585259	5585433	.	+	.	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	CDS	5585434	5585550	1	+	0	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	exon	5585434	5585550	.	+	.	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	intron	5585551	5585703	.	+	.	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	CDS	5585704	5585781	0.61	+	0	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	exon	5585704	5585781	.	+	.	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	intron	5585782	5586072	.	+	.	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	CDS	5586073	5586090	0.4	+	0	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	exon	5586073	5586090	.	+	.	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
Ledus.S5	AUGUSTUS	stop_codon	5586091	5586093	.	+	0	transcript_id "Ledus.S5G050200.t1"; gene_id "Ledus.S5G050200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11571.t1 is derived from g5189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5333063	5334613	.	-	.	Ledus.S4G072700
Ledus.S4	AUGUSTUS	transcript	5333063	5334613	.	-	.	transcript_id "Ledus.S4G072700.t1"; gene_id "Ledus.S4G072700"
Ledus.S4	AUGUSTUS	stop_codon	5333060	5333062	.	-	0	transcript_id "Ledus.S4G072700.t1"; gene_id "Ledus.S4G072700"
Ledus.S4	AUGUSTUS	CDS	5333063	5334613	1	-	0	transcript_id "Ledus.S4G072700.t1"; gene_id "Ledus.S4G072700"
Ledus.S4	AUGUSTUS	exon	5333063	5334613	.	-	.	transcript_id "Ledus.S4G072700.t1"; gene_id "Ledus.S4G072700"
Ledus.S4	AUGUSTUS	start_codon	5334611	5334613	.	-	0	transcript_id "Ledus.S4G072700.t1"; gene_id "Ledus.S4G072700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1308.t1 is derived from g8169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9211118	9212856	.	+	.	Ledus.S2G119000
Ledus.S2	AUGUSTUS	transcript	9211118	9212856	.	+	.	transcript_id "Ledus.S2G119000.t1"; gene_id "Ledus.S2G119000"
Ledus.S2	AUGUSTUS	start_codon	9211118	9211120	.	+	0	transcript_id "Ledus.S2G119000.t1"; gene_id "Ledus.S2G119000"
Ledus.S2	AUGUSTUS	CDS	9211118	9212065	0.98	+	0	transcript_id "Ledus.S2G119000.t1"; gene_id "Ledus.S2G119000"
Ledus.S2	AUGUSTUS	exon	9211118	9212065	.	+	.	transcript_id "Ledus.S2G119000.t1"; gene_id "Ledus.S2G119000"
Ledus.S2	AUGUSTUS	intron	9212066	9212155	.	+	.	transcript_id "Ledus.S2G119000.t1"; gene_id "Ledus.S2G119000"
Ledus.S2	AUGUSTUS	CDS	9212156	9212429	1	+	0	transcript_id "Ledus.S2G119000.t1"; gene_id "Ledus.S2G119000"
Ledus.S2	AUGUSTUS	exon	9212156	9212429	.	+	.	transcript_id "Ledus.S2G119000.t1"; gene_id "Ledus.S2G119000"
Ledus.S2	AUGUSTUS	intron	9212430	9212503	.	+	.	transcript_id "Ledus.S2G119000.t1"; gene_id "Ledus.S2G119000"
Ledus.S2	AUGUSTUS	CDS	9212504	9212856	1	+	2	transcript_id "Ledus.S2G119000.t1"; gene_id "Ledus.S2G119000"
Ledus.S2	AUGUSTUS	exon	9212504	9212856	.	+	.	transcript_id "Ledus.S2G119000.t1"; gene_id "Ledus.S2G119000"
Ledus.S2	AUGUSTUS	stop_codon	9212857	9212859	.	+	0	transcript_id "Ledus.S2G119000.t1"; gene_id "Ledus.S2G119000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7909.t1 is derived from g12580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7782315	7785190	.	+	.	Ledus.S5G068700
Ledus.S5	AUGUSTUS	transcript	7782315	7785190	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	start_codon	7782315	7782317	.	+	0	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	CDS	7782315	7782398	0.67	+	0	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	exon	7782315	7782398	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	intron	7782399	7782473	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	CDS	7782474	7782783	1	+	0	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	exon	7782474	7782783	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	intron	7782784	7782942	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	CDS	7782943	7783115	0.98	+	2	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	exon	7782943	7783115	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	intron	7783116	7783230	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	CDS	7783231	7783328	1	+	0	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	exon	7783231	7783328	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	intron	7783329	7783437	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	CDS	7783438	7783575	0.97	+	1	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	exon	7783438	7783575	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	intron	7783576	7783654	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	CDS	7783655	7783844	1	+	1	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	exon	7783655	7783844	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	intron	7783845	7783981	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	CDS	7783982	7784105	1	+	0	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	exon	7783982	7784105	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	intron	7784106	7784207	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	CDS	7784208	7785190	0.8	+	2	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	exon	7784208	7785190	.	+	.	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
Ledus.S5	AUGUSTUS	stop_codon	7785191	7785193	.	+	0	transcript_id "Ledus.S5G068700.t1"; gene_id "Ledus.S5G068700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5929.t1 is derived from g3372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27881682	27884632	.	+	.	Ledus.S1G335000
Ledus.S1	AUGUSTUS	transcript	27881682	27884632	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	start_codon	27881682	27881684	.	+	0	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	CDS	27881682	27881806	0.99	+	0	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	exon	27881682	27881806	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	intron	27881807	27881894	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	CDS	27881895	27882054	1	+	1	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	exon	27881895	27882054	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	intron	27882055	27882344	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	CDS	27882345	27882505	1	+	0	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	exon	27882345	27882505	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	intron	27882506	27882607	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	CDS	27882608	27882712	1	+	1	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	exon	27882608	27882712	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	intron	27882713	27882824	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	CDS	27882825	27883643	0.99	+	1	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	exon	27882825	27883643	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	intron	27883644	27883724	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	CDS	27883725	27883902	1	+	1	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	exon	27883725	27883902	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	intron	27883903	27883995	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	CDS	27883996	27884146	0.99	+	0	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	exon	27883996	27884146	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	intron	27884147	27884255	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	CDS	27884256	27884632	1	+	2	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	exon	27884256	27884632	.	+	.	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
Ledus.S1	AUGUSTUS	stop_codon	27884633	27884635	.	+	0	transcript_id "Ledus.S1G335000.t1"; gene_id "Ledus.S1G335000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3388.t1 is derived from g823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8017663	8018920	.	-	.	Ledus.S1G080900
Ledus.S1	AUGUSTUS	transcript	8017663	8018920	.	-	.	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	stop_codon	8017660	8017662	.	-	0	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	CDS	8017663	8017741	1	-	1	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	exon	8017663	8017741	.	-	.	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	intron	8017742	8017908	.	-	.	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	CDS	8017909	8017998	1	-	1	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	exon	8017909	8017998	.	-	.	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	intron	8017999	8018180	.	-	.	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	CDS	8018181	8018364	1	-	2	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	exon	8018181	8018364	.	-	.	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	intron	8018365	8018784	.	-	.	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	CDS	8018785	8018920	1	-	0	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	exon	8018785	8018920	.	-	.	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
Ledus.S1	AUGUSTUS	start_codon	8018918	8018920	.	-	0	transcript_id "Ledus.S1G080900.t1"; gene_id "Ledus.S1G080900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4304.t1 is derived from g1740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16123447	16125378	.	+	.	Ledus.S1G172500
Ledus.S1	AUGUSTUS	transcript	16123447	16125378	.	+	.	transcript_id "Ledus.S1G172500.t1"; gene_id "Ledus.S1G172500"
Ledus.S1	AUGUSTUS	start_codon	16123447	16123449	.	+	0	transcript_id "Ledus.S1G172500.t1"; gene_id "Ledus.S1G172500"
Ledus.S1	AUGUSTUS	CDS	16123447	16124576	0.63	+	0	transcript_id "Ledus.S1G172500.t1"; gene_id "Ledus.S1G172500"
Ledus.S1	AUGUSTUS	exon	16123447	16124576	.	+	.	transcript_id "Ledus.S1G172500.t1"; gene_id "Ledus.S1G172500"
Ledus.S1	AUGUSTUS	intron	16124577	16124663	.	+	.	transcript_id "Ledus.S1G172500.t1"; gene_id "Ledus.S1G172500"
Ledus.S1	AUGUSTUS	CDS	16124664	16124764	1	+	1	transcript_id "Ledus.S1G172500.t1"; gene_id "Ledus.S1G172500"
Ledus.S1	AUGUSTUS	exon	16124664	16124764	.	+	.	transcript_id "Ledus.S1G172500.t1"; gene_id "Ledus.S1G172500"
Ledus.S1	AUGUSTUS	intron	16124765	16124872	.	+	.	transcript_id "Ledus.S1G172500.t1"; gene_id "Ledus.S1G172500"
Ledus.S1	AUGUSTUS	CDS	16124873	16125378	1	+	2	transcript_id "Ledus.S1G172500.t1"; gene_id "Ledus.S1G172500"
Ledus.S1	AUGUSTUS	exon	16124873	16125378	.	+	.	transcript_id "Ledus.S1G172500.t1"; gene_id "Ledus.S1G172500"
Ledus.S1	AUGUSTUS	stop_codon	16125379	16125381	.	+	0	transcript_id "Ledus.S1G172500.t1"; gene_id "Ledus.S1G172500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6639.t1 is derived from g4082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32817632	32818021	.	+	.	Ledus.S1G406000
Ledus.S1	AUGUSTUS	transcript	32817632	32818021	.	+	.	transcript_id "Ledus.S1G406000.t1"; gene_id "Ledus.S1G406000"
Ledus.S1	AUGUSTUS	start_codon	32817632	32817634	.	+	0	transcript_id "Ledus.S1G406000.t1"; gene_id "Ledus.S1G406000"
Ledus.S1	AUGUSTUS	CDS	32817632	32818021	0.43	+	0	transcript_id "Ledus.S1G406000.t1"; gene_id "Ledus.S1G406000"
Ledus.S1	AUGUSTUS	exon	32817632	32818021	.	+	.	transcript_id "Ledus.S1G406000.t1"; gene_id "Ledus.S1G406000"
Ledus.S1	AUGUSTUS	stop_codon	32818022	32818024	.	+	0	transcript_id "Ledus.S1G406000.t1"; gene_id "Ledus.S1G406000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4233.t1 is derived from g1669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15677773	15680261	.	+	.	Ledus.S1G165400
Ledus.S1	AUGUSTUS	transcript	15677773	15680261	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	start_codon	15677773	15677775	.	+	0	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	CDS	15677773	15677865	0.97	+	0	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	exon	15677773	15677865	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	intron	15677866	15677955	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	CDS	15677956	15678069	1	+	0	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	exon	15677956	15678069	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	intron	15678070	15678252	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	CDS	15678253	15678342	1	+	0	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	exon	15678253	15678342	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	intron	15678343	15678422	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	CDS	15678423	15678504	1	+	0	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	exon	15678423	15678504	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	intron	15678505	15678622	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	CDS	15678623	15678669	1	+	2	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	exon	15678623	15678669	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	intron	15678670	15678752	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	CDS	15678753	15678831	1	+	0	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	exon	15678753	15678831	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	intron	15678832	15678923	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	CDS	15678924	15679058	1	+	2	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	exon	15678924	15679058	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	intron	15679059	15679183	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	CDS	15679184	15679416	1	+	2	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	exon	15679184	15679416	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	intron	15679417	15679516	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	CDS	15679517	15679675	1	+	0	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	exon	15679517	15679675	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	intron	15679676	15679756	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	CDS	15679757	15679796	0.61	+	0	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	exon	15679757	15679796	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	intron	15679797	15679938	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	CDS	15679939	15679968	0.64	+	2	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	exon	15679939	15679968	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	intron	15679969	15680214	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	CDS	15680215	15680261	0.78	+	2	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	exon	15680215	15680261	.	+	.	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
Ledus.S1	AUGUSTUS	stop_codon	15680262	15680264	.	+	0	transcript_id "Ledus.S1G165400.t1"; gene_id "Ledus.S1G165400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6679.t1 is derived from g4122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33163548	33165502	.	+	.	Ledus.S1G410000
Ledus.S1	AUGUSTUS	transcript	33163548	33165502	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	start_codon	33163548	33163550	.	+	0	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33163548	33163620	0.72	+	0	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33163548	33163620	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33163621	33163704	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33163705	33163906	1	+	2	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33163705	33163906	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33163907	33163988	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33163989	33164051	1	+	1	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33163989	33164051	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33164052	33164172	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33164173	33164289	1	+	1	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33164173	33164289	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33164290	33164423	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33164424	33164700	0.79	+	1	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33164424	33164700	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33164701	33164778	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33164779	33164937	0.78	+	0	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33164779	33164937	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33164938	33165045	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33165046	33165197	1	+	0	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33165046	33165197	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33165198	33165333	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33165334	33165502	1	+	1	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33165334	33165502	.	+	.	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	stop_codon	33165503	33165505	.	+	0	transcript_id "Ledus.S1G410000.t1"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	transcript	33163548	33165502	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	start_codon	33163548	33163550	.	+	0	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33163548	33163620	0.74	+	0	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33163548	33163620	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33163621	33163707	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33163708	33163906	1	+	2	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33163708	33163906	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33163907	33163988	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33163989	33164051	1	+	1	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33163989	33164051	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33164052	33164172	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33164173	33164289	1	+	1	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33164173	33164289	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33164290	33164423	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33164424	33164700	0.71	+	1	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33164424	33164700	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33164701	33164778	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33164779	33164937	0.72	+	0	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33164779	33164937	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33164938	33165045	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33165046	33165197	1	+	0	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33165046	33165197	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	intron	33165198	33165333	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	CDS	33165334	33165502	1	+	1	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	exon	33165334	33165502	.	+	.	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
Ledus.S1	AUGUSTUS	stop_codon	33165503	33165505	.	+	0	transcript_id "Ledus.S1G410000.t2"; gene_id "Ledus.S1G410000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10374.t1 is derived from g11404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14585362	14588452	.	+	.	Ledus.S3G185100
Ledus.S3	AUGUSTUS	transcript	14585362	14588452	.	+	.	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	start_codon	14585362	14585364	.	+	0	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	CDS	14585362	14585571	0.99	+	0	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	exon	14585362	14585571	.	+	.	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	intron	14585572	14585849	.	+	.	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	CDS	14585850	14586812	1	+	0	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	exon	14585850	14586812	.	+	.	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	intron	14586813	14586894	.	+	.	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	CDS	14586895	14586969	0.58	+	0	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	exon	14586895	14586969	.	+	.	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	intron	14586970	14587098	.	+	.	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	CDS	14587099	14587531	0.95	+	0	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	exon	14587099	14587531	.	+	.	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	intron	14587532	14588029	.	+	.	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	CDS	14588030	14588104	0.88	+	2	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	exon	14588030	14588104	.	+	.	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	intron	14588105	14588276	.	+	.	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	CDS	14588277	14588452	0.76	+	2	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	exon	14588277	14588452	.	+	.	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
Ledus.S3	AUGUSTUS	stop_codon	14588453	14588455	.	+	0	transcript_id "Ledus.S3G185100.t1"; gene_id "Ledus.S3G185100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1297.t1 is derived from g8158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9154805	9155199	.	-	.	Ledus.S2G117900
Ledus.S2	AUGUSTUS	transcript	9154805	9155199	.	-	.	transcript_id "Ledus.S2G117900.t1"; gene_id "Ledus.S2G117900"
Ledus.S2	AUGUSTUS	stop_codon	9154802	9154804	.	-	0	transcript_id "Ledus.S2G117900.t1"; gene_id "Ledus.S2G117900"
Ledus.S2	AUGUSTUS	CDS	9154805	9154948	0.51	-	0	transcript_id "Ledus.S2G117900.t1"; gene_id "Ledus.S2G117900"
Ledus.S2	AUGUSTUS	exon	9154805	9154948	.	-	.	transcript_id "Ledus.S2G117900.t1"; gene_id "Ledus.S2G117900"
Ledus.S2	AUGUSTUS	intron	9154949	9155085	.	-	.	transcript_id "Ledus.S2G117900.t1"; gene_id "Ledus.S2G117900"
Ledus.S2	AUGUSTUS	CDS	9155086	9155199	0.28	-	0	transcript_id "Ledus.S2G117900.t1"; gene_id "Ledus.S2G117900"
Ledus.S2	AUGUSTUS	exon	9155086	9155199	.	-	.	transcript_id "Ledus.S2G117900.t1"; gene_id "Ledus.S2G117900"
Ledus.S2	AUGUSTUS	start_codon	9155197	9155199	.	-	0	transcript_id "Ledus.S2G117900.t1"; gene_id "Ledus.S2G117900"
# This transcript jg10792.t2 is derived from g11824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10793.t1 is derived from g11825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17772343	17774936	.	-	.	Ledus.S3G227000
Ledus.S3	AUGUSTUS	transcript	17772343	17774936	.	-	.	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	stop_codon	17772340	17772342	.	-	0	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	CDS	17772343	17772384	1	-	0	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	exon	17772343	17772384	.	-	.	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	intron	17772385	17772540	.	-	.	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	CDS	17772541	17772753	1	-	0	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	exon	17772541	17772753	.	-	.	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	intron	17772754	17773000	.	-	.	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	CDS	17773001	17773762	0.99	-	0	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	exon	17773001	17773762	.	-	.	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	intron	17773763	17774927	.	-	.	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	CDS	17774928	17774936	0.9	-	0	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	exon	17774928	17774936	.	-	.	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
Ledus.S3	AUGUSTUS	start_codon	17774934	17774936	.	-	0	transcript_id "Ledus.S3G227000.t1"; gene_id "Ledus.S3G227000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7668.t1 is derived from g12339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4985080	4986921	.	-	.	Ledus.S5G044600
Ledus.S5	AUGUSTUS	transcript	4985080	4986921	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	stop_codon	4985077	4985079	.	-	0	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	CDS	4985080	4985390	0.97	-	2	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	exon	4985080	4985390	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	intron	4985391	4985504	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	CDS	4985505	4985600	0.98	-	2	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	exon	4985505	4985600	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	intron	4985601	4985688	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	CDS	4985689	4985759	0.93	-	1	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	exon	4985689	4985759	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	intron	4985760	4985846	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	CDS	4985847	4985887	0.94	-	0	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	exon	4985847	4985887	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	intron	4985888	4985973	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	CDS	4985974	4986114	0.99	-	0	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	exon	4985974	4986114	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	intron	4986115	4986200	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	CDS	4986201	4986314	1	-	0	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	exon	4986201	4986314	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	intron	4986315	4986402	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	CDS	4986403	4986669	1	-	0	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	exon	4986403	4986669	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	intron	4986670	4986741	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	CDS	4986742	4986921	0.74	-	0	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	exon	4986742	4986921	.	-	.	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
Ledus.S5	AUGUSTUS	start_codon	4986919	4986921	.	-	0	transcript_id "Ledus.S5G044600.t1"; gene_id "Ledus.S5G044600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg352.t1 is derived from g7213.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1858999	1859626	.	-	.	Ledus.S2G023400
Ledus.S2	AUGUSTUS	transcript	1858999	1859626	.	-	.	transcript_id "Ledus.S2G023400.t1"; gene_id "Ledus.S2G023400"
Ledus.S2	AUGUSTUS	stop_codon	1858996	1858998	.	-	0	transcript_id "Ledus.S2G023400.t1"; gene_id "Ledus.S2G023400"
Ledus.S2	AUGUSTUS	CDS	1858999	1859256	0.99	-	0	transcript_id "Ledus.S2G023400.t1"; gene_id "Ledus.S2G023400"
Ledus.S2	AUGUSTUS	exon	1858999	1859256	.	-	.	transcript_id "Ledus.S2G023400.t1"; gene_id "Ledus.S2G023400"
Ledus.S2	AUGUSTUS	intron	1859257	1859375	.	-	.	transcript_id "Ledus.S2G023400.t1"; gene_id "Ledus.S2G023400"
Ledus.S2	AUGUSTUS	CDS	1859376	1859486	1	-	0	transcript_id "Ledus.S2G023400.t1"; gene_id "Ledus.S2G023400"
Ledus.S2	AUGUSTUS	exon	1859376	1859486	.	-	.	transcript_id "Ledus.S2G023400.t1"; gene_id "Ledus.S2G023400"
Ledus.S2	AUGUSTUS	intron	1859487	1859617	.	-	.	transcript_id "Ledus.S2G023400.t1"; gene_id "Ledus.S2G023400"
Ledus.S2	AUGUSTUS	CDS	1859618	1859626	1	-	0	transcript_id "Ledus.S2G023400.t1"; gene_id "Ledus.S2G023400"
Ledus.S2	AUGUSTUS	exon	1859618	1859626	.	-	.	transcript_id "Ledus.S2G023400.t1"; gene_id "Ledus.S2G023400"
Ledus.S2	AUGUSTUS	start_codon	1859624	1859626	.	-	0	transcript_id "Ledus.S2G023400.t1"; gene_id "Ledus.S2G023400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2761.t1 is derived from g195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3352629	3353835	.	-	.	Ledus.S1G018200
Ledus.S1	AUGUSTUS	transcript	3352629	3353835	.	-	.	transcript_id "Ledus.S1G018200.t1"; gene_id "Ledus.S1G018200"
Ledus.S1	AUGUSTUS	stop_codon	3352626	3352628	.	-	0	transcript_id "Ledus.S1G018200.t1"; gene_id "Ledus.S1G018200"
Ledus.S1	AUGUSTUS	CDS	3352629	3352782	0.89	-	1	transcript_id "Ledus.S1G018200.t1"; gene_id "Ledus.S1G018200"
Ledus.S1	AUGUSTUS	exon	3352629	3352782	.	-	.	transcript_id "Ledus.S1G018200.t1"; gene_id "Ledus.S1G018200"
Ledus.S1	AUGUSTUS	intron	3352783	3352883	.	-	.	transcript_id "Ledus.S1G018200.t1"; gene_id "Ledus.S1G018200"
Ledus.S1	AUGUSTUS	CDS	3352884	3353107	1	-	0	transcript_id "Ledus.S1G018200.t1"; gene_id "Ledus.S1G018200"
Ledus.S1	AUGUSTUS	exon	3352884	3353107	.	-	.	transcript_id "Ledus.S1G018200.t1"; gene_id "Ledus.S1G018200"
Ledus.S1	AUGUSTUS	intron	3353108	3353193	.	-	.	transcript_id "Ledus.S1G018200.t1"; gene_id "Ledus.S1G018200"
Ledus.S1	AUGUSTUS	CDS	3353194	3353835	1	-	0	transcript_id "Ledus.S1G018200.t1"; gene_id "Ledus.S1G018200"
Ledus.S1	AUGUSTUS	exon	3353194	3353835	.	-	.	transcript_id "Ledus.S1G018200.t1"; gene_id "Ledus.S1G018200"
Ledus.S1	AUGUSTUS	start_codon	3353833	3353835	.	-	0	transcript_id "Ledus.S1G018200.t1"; gene_id "Ledus.S1G018200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2140.t1 is derived from g9003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15070460	15071320	.	-	.	Ledus.S2G202200
Ledus.S2	AUGUSTUS	transcript	15070460	15071320	.	-	.	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	stop_codon	15070457	15070459	.	-	0	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	CDS	15070460	15070508	0.26	-	1	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	exon	15070460	15070508	.	-	.	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	intron	15070509	15070586	.	-	.	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	CDS	15070587	15070640	0.24	-	1	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	exon	15070587	15070640	.	-	.	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	intron	15070641	15070801	.	-	.	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	CDS	15070802	15070943	0.25	-	2	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	exon	15070802	15070943	.	-	.	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	intron	15070944	15071070	.	-	.	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	CDS	15071071	15071320	0.62	-	0	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	exon	15071071	15071320	.	-	.	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
Ledus.S2	AUGUSTUS	start_codon	15071318	15071320	.	-	0	transcript_id "Ledus.S2G202200.t1"; gene_id "Ledus.S2G202200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1331.t1 is derived from g8192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9296775	9300126	.	-	.	Ledus.S2G121300
Ledus.S2	AUGUSTUS	transcript	9296775	9300126	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	stop_codon	9296772	9296774	.	-	0	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	CDS	9296775	9296999	0.8	-	0	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	exon	9296775	9296999	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	intron	9297000	9297108	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	CDS	9297109	9297176	0.98	-	2	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	exon	9297109	9297176	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	intron	9297177	9297266	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	CDS	9297267	9297408	1	-	0	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	exon	9297267	9297408	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	intron	9297409	9297506	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	CDS	9297507	9297659	1	-	0	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	exon	9297507	9297659	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	intron	9297660	9297747	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	CDS	9297748	9297908	1	-	2	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	exon	9297748	9297908	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	intron	9297909	9298001	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	CDS	9298002	9298150	1	-	1	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	exon	9298002	9298150	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	intron	9298151	9298234	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	CDS	9298235	9298809	1	-	0	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	exon	9298235	9298809	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	intron	9298810	9298876	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	CDS	9298877	9299311	1	-	0	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	exon	9298877	9299311	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	intron	9299312	9299385	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	CDS	9299386	9299676	1	-	0	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	exon	9299386	9299676	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	intron	9299677	9299758	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	CDS	9299759	9299858	1	-	1	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	exon	9299759	9299858	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	intron	9299859	9299956	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	CDS	9299957	9300126	0.99	-	0	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	exon	9299957	9300126	.	-	.	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
Ledus.S2	AUGUSTUS	start_codon	9300124	9300126	.	-	0	transcript_id "Ledus.S2G121300.t1"; gene_id "Ledus.S2G121300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8288.t1 is derived from g12959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10502043	10504353	.	+	.	Ledus.S5G106600
Ledus.S5	AUGUSTUS	transcript	10502043	10504353	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	start_codon	10502043	10502045	.	+	0	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	CDS	10502043	10502717	0.1	+	0	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	exon	10502043	10502717	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	intron	10502718	10502795	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	CDS	10502796	10502885	1	+	0	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	exon	10502796	10502885	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	intron	10502886	10502973	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	CDS	10502974	10503093	1	+	0	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	exon	10502974	10503093	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	intron	10503094	10503223	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	CDS	10503224	10503390	1	+	0	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	exon	10503224	10503390	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	intron	10503391	10503471	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	CDS	10503472	10503542	1	+	1	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	exon	10503472	10503542	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	intron	10503543	10503632	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	CDS	10503633	10503775	1	+	2	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	exon	10503633	10503775	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	intron	10503776	10503860	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	CDS	10503861	10503975	1	+	0	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	exon	10503861	10503975	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	intron	10503976	10504067	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	CDS	10504068	10504162	1	+	2	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	exon	10504068	10504162	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	intron	10504163	10504248	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	CDS	10504249	10504353	0.93	+	0	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	exon	10504249	10504353	.	+	.	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
Ledus.S5	AUGUSTUS	stop_codon	10504354	10504356	.	+	0	transcript_id "Ledus.S5G106600.t1"; gene_id "Ledus.S5G106600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10474.t1 is derived from g11504.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15481422	15482372	.	-	.	Ledus.S3G195100
Ledus.S3	AUGUSTUS	transcript	15481422	15482372	.	-	.	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	stop_codon	15481419	15481421	.	-	0	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	CDS	15481422	15481439	0.19	-	0	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	exon	15481422	15481439	.	-	.	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	intron	15481440	15481657	.	-	.	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	CDS	15481658	15481717	0.43	-	0	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	exon	15481658	15481717	.	-	.	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	intron	15481718	15481862	.	-	.	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	CDS	15481863	15481890	0.74	-	1	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	exon	15481863	15481890	.	-	.	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	intron	15481891	15481974	.	-	.	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	CDS	15481975	15482372	0.35	-	0	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	exon	15481975	15482372	.	-	.	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
Ledus.S3	AUGUSTUS	start_codon	15482370	15482372	.	-	0	transcript_id "Ledus.S3G195100.t1"; gene_id "Ledus.S3G195100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3745.t1 is derived from g1181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11538757	11539739	.	+	.	Ledus.S1G116600
Ledus.S1	AUGUSTUS	transcript	11538757	11539739	.	+	.	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	start_codon	11538757	11538759	.	+	0	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	CDS	11538757	11538924	0.65	+	0	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	exon	11538757	11538924	.	+	.	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	intron	11538925	11539091	.	+	.	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	CDS	11539092	11539238	0.45	+	0	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	exon	11539092	11539238	.	+	.	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	intron	11539239	11539307	.	+	.	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	CDS	11539308	11539495	0.43	+	0	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	exon	11539308	11539495	.	+	.	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	intron	11539496	11539645	.	+	.	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	CDS	11539646	11539739	0.94	+	1	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	exon	11539646	11539739	.	+	.	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
Ledus.S1	AUGUSTUS	stop_codon	11539740	11539742	.	+	0	transcript_id "Ledus.S1G116600.t1"; gene_id "Ledus.S1G116600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4402.t1 is derived from g1838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16903477	16908024	.	-	.	Ledus.S1G182300
Ledus.S1	AUGUSTUS	transcript	16903477	16908024	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	stop_codon	16903474	16903476	.	-	0	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16903477	16903564	1	-	1	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16903477	16903564	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16903565	16903658	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16903659	16903745	1	-	1	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16903659	16903745	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16903746	16903932	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16903933	16904073	1	-	1	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16903933	16904073	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16904074	16904275	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16904276	16904355	0.99	-	0	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16904276	16904355	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16904356	16904467	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16904468	16904576	0.99	-	1	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16904468	16904576	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16904577	16904705	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16904706	16904812	1	-	0	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16904706	16904812	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16904813	16904908	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16904909	16904972	1	-	1	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16904909	16904972	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16904973	16905097	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16905098	16905127	1	-	1	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16905098	16905127	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16905128	16905326	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16905327	16905422	1	-	1	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16905327	16905422	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16905423	16905518	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16905519	16905643	1	-	0	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16905519	16905643	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16905644	16905781	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16905782	16905982	1	-	0	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16905782	16905982	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16905983	16906116	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16906117	16906183	1	-	1	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16906117	16906183	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16906184	16906271	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16906272	16906387	1	-	0	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16906272	16906387	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16906388	16906475	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16906476	16906578	1	-	1	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16906476	16906578	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16906579	16906767	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16906768	16906837	1	-	2	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16906768	16906837	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16906838	16906929	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16906930	16907066	1	-	1	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16906930	16907066	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16907067	16907138	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16907139	16907211	1	-	2	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16907139	16907211	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16907212	16907291	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16907292	16907388	1	-	0	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16907292	16907388	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16907389	16907466	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16907467	16907568	1	-	0	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16907467	16907568	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16907569	16907655	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16907656	16907831	0.84	-	2	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16907656	16907831	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	intron	16907832	16907996	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	CDS	16907997	16908024	0.86	-	0	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	exon	16907997	16908024	.	-	.	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
Ledus.S1	AUGUSTUS	start_codon	16908022	16908024	.	-	0	transcript_id "Ledus.S1G182300.t1"; gene_id "Ledus.S1G182300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg594.t1 is derived from g7455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3538002	3539532	.	+	.	Ledus.S2G047600
Ledus.S2	AUGUSTUS	transcript	3538002	3539532	.	+	.	transcript_id "Ledus.S2G047600.t1"; gene_id "Ledus.S2G047600"
Ledus.S2	AUGUSTUS	start_codon	3538002	3538004	.	+	0	transcript_id "Ledus.S2G047600.t1"; gene_id "Ledus.S2G047600"
Ledus.S2	AUGUSTUS	CDS	3538002	3538664	0.96	+	0	transcript_id "Ledus.S2G047600.t1"; gene_id "Ledus.S2G047600"
Ledus.S2	AUGUSTUS	exon	3538002	3538664	.	+	.	transcript_id "Ledus.S2G047600.t1"; gene_id "Ledus.S2G047600"
Ledus.S2	AUGUSTUS	intron	3538665	3538752	.	+	.	transcript_id "Ledus.S2G047600.t1"; gene_id "Ledus.S2G047600"
Ledus.S2	AUGUSTUS	CDS	3538753	3539532	0.99	+	0	transcript_id "Ledus.S2G047600.t1"; gene_id "Ledus.S2G047600"
Ledus.S2	AUGUSTUS	exon	3538753	3539532	.	+	.	transcript_id "Ledus.S2G047600.t1"; gene_id "Ledus.S2G047600"
Ledus.S2	AUGUSTUS	stop_codon	3539533	3539535	.	+	0	transcript_id "Ledus.S2G047600.t1"; gene_id "Ledus.S2G047600"
# This transcript jg848.t2 is derived from g7709.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg849.t1 is derived from g7710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5667846	5668169	.	+	.	Ledus.S2G073100
Ledus.S2	AUGUSTUS	transcript	5667846	5668169	.	+	.	transcript_id "Ledus.S2G073100.t1"; gene_id "Ledus.S2G073100"
Ledus.S2	AUGUSTUS	start_codon	5667846	5667848	.	+	0	transcript_id "Ledus.S2G073100.t1"; gene_id "Ledus.S2G073100"
Ledus.S2	AUGUSTUS	CDS	5667846	5668169	0.95	+	0	transcript_id "Ledus.S2G073100.t1"; gene_id "Ledus.S2G073100"
Ledus.S2	AUGUSTUS	exon	5667846	5668169	.	+	.	transcript_id "Ledus.S2G073100.t1"; gene_id "Ledus.S2G073100"
Ledus.S2	AUGUSTUS	stop_codon	5668170	5668172	.	+	0	transcript_id "Ledus.S2G073100.t1"; gene_id "Ledus.S2G073100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7860.t1 is derived from g12531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7512359	7515596	.	-	.	Ledus.S5G063800
Ledus.S5	AUGUSTUS	transcript	7512359	7515596	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	stop_codon	7512356	7512358	.	-	0	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7512359	7512380	0.86	-	1	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7512359	7512380	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7512381	7512451	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7512452	7512482	0.58	-	2	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7512452	7512482	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7512483	7512750	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7512751	7512891	0.57	-	2	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7512751	7512891	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7512892	7513163	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7513164	7513227	0.97	-	0	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7513164	7513227	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7513228	7513323	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7513324	7513391	0.66	-	2	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7513324	7513391	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7513392	7513625	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7513626	7513768	0.38	-	1	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7513626	7513768	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7513769	7514012	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7514013	7514107	0.91	-	0	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7514013	7514107	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7514108	7514199	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7514200	7514287	1	-	1	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7514200	7514287	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7514288	7514378	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7514379	7514449	1	-	0	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7514379	7514449	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7514450	7514523	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7514524	7514628	0.78	-	0	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7514524	7514628	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7514629	7514728	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7514729	7514805	1	-	2	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7514729	7514805	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7514806	7514890	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7514891	7515029	1	-	0	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7514891	7515029	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7515030	7515120	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7515121	7515168	1	-	0	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7515121	7515168	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7515169	7515250	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7515251	7515310	1	-	0	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7515251	7515310	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	intron	7515311	7515389	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	CDS	7515390	7515596	0.81	-	0	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	exon	7515390	7515596	.	-	.	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
Ledus.S5	AUGUSTUS	start_codon	7515594	7515596	.	-	0	transcript_id "Ledus.S5G063800.t1"; gene_id "Ledus.S5G063800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg215.t1 is derived from g7076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	939738	944432	.	+	.	Ledus.S2G009700
Ledus.S2	AUGUSTUS	transcript	939738	944432	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	start_codon	939738	939740	.	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	939738	939748	0.41	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	939738	939748	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	939749	939839	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	939840	939930	0.79	+	1	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	939840	939930	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	939931	940037	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	940038	940112	1	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	940038	940112	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	940113	940328	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	940329	940406	1	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	940329	940406	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	940407	940497	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	940498	940551	1	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	940498	940551	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	940552	940643	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	940644	940742	1	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	940644	940742	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	940743	940826	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	940827	940925	1	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	940827	940925	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	940926	941007	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	941008	941063	0.99	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	941008	941063	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	941064	941246	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	941247	941333	0.91	+	1	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	941247	941333	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	941334	941429	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	941430	941494	1	+	1	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	941430	941494	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	941495	941589	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	941590	941811	0.98	+	2	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	941590	941811	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	941812	942056	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	942057	942271	0.69	+	2	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	942057	942271	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	942272	942356	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	942357	942634	1	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	942357	942634	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	942635	942722	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	942723	943038	0.94	+	1	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	942723	943038	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	943039	943119	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	943120	943242	0.93	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	943120	943242	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	943243	943328	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	943329	943493	1	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	943329	943493	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	943494	943597	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	943598	943750	0.96	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	943598	943750	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	943751	943839	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	943840	944088	0.98	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	943840	944088	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	944089	944186	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	944187	944276	0.99	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	944187	944276	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	intron	944277	944378	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	CDS	944379	944432	0.93	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	exon	944379	944432	.	+	.	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
Ledus.S2	AUGUSTUS	stop_codon	944433	944435	.	+	0	transcript_id "Ledus.S2G009700.t1"; gene_id "Ledus.S2G009700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6763.t1 is derived from g4206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34004471	34005890	.	-	.	Ledus.S1G418400
Ledus.S1	AUGUSTUS	transcript	34004471	34005890	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	stop_codon	34004468	34004470	.	-	0	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34004471	34004913	0.99	-	2	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34004471	34004913	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	intron	34004914	34005002	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34005003	34005138	1	-	0	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34005003	34005138	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	intron	34005139	34005213	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34005214	34005251	1	-	2	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34005214	34005251	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	intron	34005252	34005336	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34005337	34005430	1	-	0	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34005337	34005430	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	intron	34005431	34005502	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34005503	34005543	1	-	2	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34005503	34005543	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	intron	34005544	34005753	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34005754	34005759	1	-	2	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34005754	34005759	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	intron	34005760	34005835	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34005836	34005890	0.46	-	0	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34005836	34005890	.	-	.	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	start_codon	34005888	34005890	.	-	0	transcript_id "Ledus.S1G418400.t1"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	transcript	34004727	34005890	.	-	.	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	stop_codon	34004724	34004726	.	-	0	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34004727	34004913	0.67	-	1	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34004727	34004913	.	-	.	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	intron	34004914	34005002	.	-	.	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34005003	34005138	0.99	-	2	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34005003	34005138	.	-	.	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	intron	34005139	34005336	.	-	.	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34005337	34005430	0.99	-	0	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34005337	34005430	.	-	.	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	intron	34005431	34005502	.	-	.	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34005503	34005543	1	-	2	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34005503	34005543	.	-	.	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	intron	34005544	34005753	.	-	.	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34005754	34005759	1	-	2	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34005754	34005759	.	-	.	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	intron	34005760	34005835	.	-	.	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	CDS	34005836	34005890	0.33	-	0	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	exon	34005836	34005890	.	-	.	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
Ledus.S1	AUGUSTUS	start_codon	34005888	34005890	.	-	0	transcript_id "Ledus.S1G418400.t2"; gene_id "Ledus.S1G418400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6798.t1 is derived from g4242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34257607	34258906	.	-	.	Ledus.S1G421900
Ledus.S1	AUGUSTUS	transcript	34257607	34258906	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	stop_codon	34257604	34257606	.	-	0	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	CDS	34257607	34257660	1	-	0	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	exon	34257607	34257660	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	intron	34257661	34257740	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	CDS	34257741	34257798	1	-	1	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	exon	34257741	34257798	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	intron	34257799	34257891	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	CDS	34257892	34257979	0.99	-	2	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	exon	34257892	34257979	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	intron	34257980	34258088	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	CDS	34258089	34258134	1	-	0	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	exon	34258089	34258134	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	intron	34258135	34258227	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	CDS	34258228	34258263	1	-	0	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	exon	34258228	34258263	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	intron	34258264	34258381	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	CDS	34258382	34258453	1	-	0	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	exon	34258382	34258453	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	intron	34258454	34258595	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	CDS	34258596	34258708	0.98	-	2	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	exon	34258596	34258708	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	intron	34258709	34258815	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	CDS	34258816	34258906	1	-	0	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	exon	34258816	34258906	.	-	.	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
Ledus.S1	AUGUSTUS	start_codon	34258904	34258906	.	-	0	transcript_id "Ledus.S1G421900.t1"; gene_id "Ledus.S1G421900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9790.t1 is derived from g10820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9833741	9834961	.	+	.	Ledus.S3G126700
Ledus.S3	AUGUSTUS	transcript	9833741	9834961	.	+	.	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	start_codon	9833741	9833743	.	+	0	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	CDS	9833741	9833917	0.97	+	0	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	exon	9833741	9833917	.	+	.	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	intron	9833918	9833998	.	+	.	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	CDS	9833999	9834230	1	+	0	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	exon	9833999	9834230	.	+	.	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	intron	9834231	9834309	.	+	.	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	CDS	9834310	9834356	1	+	2	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	exon	9834310	9834356	.	+	.	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	intron	9834357	9834432	.	+	.	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	CDS	9834433	9834501	1	+	0	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	exon	9834433	9834501	.	+	.	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	intron	9834502	9834579	.	+	.	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	CDS	9834580	9834654	1	+	0	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	exon	9834580	9834654	.	+	.	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	intron	9834655	9834748	.	+	.	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	CDS	9834749	9834961	1	+	0	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	exon	9834749	9834961	.	+	.	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
Ledus.S3	AUGUSTUS	stop_codon	9834962	9834964	.	+	0	transcript_id "Ledus.S3G126700.t1"; gene_id "Ledus.S3G126700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10188.t1 is derived from g11218.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13494523	13494968	.	+	.	Ledus.S3G166500
Ledus.S3	AUGUSTUS	transcript	13494523	13494968	.	+	.	transcript_id "Ledus.S3G166500.t1"; gene_id "Ledus.S3G166500"
Ledus.S3	AUGUSTUS	start_codon	13494523	13494525	.	+	0	transcript_id "Ledus.S3G166500.t1"; gene_id "Ledus.S3G166500"
Ledus.S3	AUGUSTUS	CDS	13494523	13494729	0.98	+	0	transcript_id "Ledus.S3G166500.t1"; gene_id "Ledus.S3G166500"
Ledus.S3	AUGUSTUS	exon	13494523	13494729	.	+	.	transcript_id "Ledus.S3G166500.t1"; gene_id "Ledus.S3G166500"
Ledus.S3	AUGUSTUS	intron	13494730	13494818	.	+	.	transcript_id "Ledus.S3G166500.t1"; gene_id "Ledus.S3G166500"
Ledus.S3	AUGUSTUS	CDS	13494819	13494968	1	+	0	transcript_id "Ledus.S3G166500.t1"; gene_id "Ledus.S3G166500"
Ledus.S3	AUGUSTUS	exon	13494819	13494968	.	+	.	transcript_id "Ledus.S3G166500.t1"; gene_id "Ledus.S3G166500"
Ledus.S3	AUGUSTUS	stop_codon	13494969	13494971	.	+	0	transcript_id "Ledus.S3G166500.t1"; gene_id "Ledus.S3G166500"
# This transcript jg12933.t2 is derived from g4425.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12933.t3 is derived from g4425.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12934.t1 is derived from g4426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	419997	420698	.	-	.	Ledus.C9G004200
Ledus.C9	AUGUSTUS	transcript	419997	420698	.	-	.	transcript_id "Ledus.C9G004200.t1"; gene_id "Ledus.C9G004200"
Ledus.C9	AUGUSTUS	stop_codon	419994	419996	.	-	0	transcript_id "Ledus.C9G004200.t1"; gene_id "Ledus.C9G004200"
Ledus.C9	AUGUSTUS	CDS	419997	420035	0.17	-	0	transcript_id "Ledus.C9G004200.t1"; gene_id "Ledus.C9G004200"
Ledus.C9	AUGUSTUS	exon	419997	420035	.	-	.	transcript_id "Ledus.C9G004200.t1"; gene_id "Ledus.C9G004200"
Ledus.C9	AUGUSTUS	intron	420036	420227	.	-	.	transcript_id "Ledus.C9G004200.t1"; gene_id "Ledus.C9G004200"
Ledus.C9	AUGUSTUS	CDS	420228	420346	0.46	-	2	transcript_id "Ledus.C9G004200.t1"; gene_id "Ledus.C9G004200"
Ledus.C9	AUGUSTUS	exon	420228	420346	.	-	.	transcript_id "Ledus.C9G004200.t1"; gene_id "Ledus.C9G004200"
Ledus.C9	AUGUSTUS	intron	420347	420649	.	-	.	transcript_id "Ledus.C9G004200.t1"; gene_id "Ledus.C9G004200"
Ledus.C9	AUGUSTUS	CDS	420650	420698	0.27	-	0	transcript_id "Ledus.C9G004200.t1"; gene_id "Ledus.C9G004200"
Ledus.C9	AUGUSTUS	exon	420650	420698	.	-	.	transcript_id "Ledus.C9G004200.t1"; gene_id "Ledus.C9G004200"
Ledus.C9	AUGUSTUS	start_codon	420696	420698	.	-	0	transcript_id "Ledus.C9G004200.t1"; gene_id "Ledus.C9G004200"
# This transcript jg4247.t2 is derived from g1683.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4248.t1 is derived from g1684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15756439	15758377	.	-	.	Ledus.S1G166900
Ledus.S1	AUGUSTUS	transcript	15756439	15758377	.	-	.	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	stop_codon	15756436	15756438	.	-	0	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	CDS	15756439	15756594	0.64	-	0	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	exon	15756439	15756594	.	-	.	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	intron	15756595	15756712	.	-	.	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	CDS	15756713	15757358	0.64	-	1	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	exon	15756713	15757358	.	-	.	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	intron	15757359	15757737	.	-	.	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	CDS	15757738	15757807	0.42	-	2	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	exon	15757738	15757807	.	-	.	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	intron	15757808	15758088	.	-	.	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	CDS	15758089	15758377	0.7	-	0	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	exon	15758089	15758377	.	-	.	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
Ledus.S1	AUGUSTUS	start_codon	15758375	15758377	.	-	0	transcript_id "Ledus.S1G166900.t1"; gene_id "Ledus.S1G166900"
# This transcript jg2544.t2 is derived from g9407.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2545.t1 is derived from g9408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18856848	18862579	.	+	.	Ledus.S2G242700
Ledus.S2	AUGUSTUS	transcript	18856848	18862579	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	start_codon	18856848	18856850	.	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18856848	18857276	0.77	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18856848	18857276	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18857277	18857386	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18857387	18857562	0.99	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18857387	18857562	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18857563	18857699	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18857700	18857813	1	+	1	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18857700	18857813	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18857814	18857898	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18857899	18858007	1	+	1	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18857899	18858007	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18858008	18858313	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18858314	18858400	1	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18858314	18858400	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18858401	18858600	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18858601	18858719	1	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18858601	18858719	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18858720	18858798	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18858799	18859003	1	+	1	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18858799	18859003	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18859004	18859101	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18859102	18859701	0.94	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18859102	18859701	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18859702	18859836	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18859837	18860121	1	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18859837	18860121	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18860122	18860236	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18860237	18860443	0.97	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18860237	18860443	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18860444	18860670	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18860671	18861099	1	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18860671	18861099	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18861100	18861297	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18861298	18861525	1	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18861298	18861525	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18861526	18861638	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18861639	18861859	1	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18861639	18861859	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18861860	18862067	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18862068	18862167	1	+	1	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18862068	18862167	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18862168	18862249	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18862250	18862396	1	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18862250	18862396	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	intron	18862397	18862483	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	CDS	18862484	18862579	1	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	exon	18862484	18862579	.	+	.	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
Ledus.S2	AUGUSTUS	stop_codon	18862580	18862582	.	+	0	transcript_id "Ledus.S2G242700.t1"; gene_id "Ledus.S2G242700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5927.t1 is derived from g3370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27878043	27879071	.	-	.	Ledus.S1G334800
Ledus.S1	AUGUSTUS	transcript	27878043	27879071	.	-	.	transcript_id "Ledus.S1G334800.t1"; gene_id "Ledus.S1G334800"
Ledus.S1	AUGUSTUS	stop_codon	27878040	27878042	.	-	0	transcript_id "Ledus.S1G334800.t1"; gene_id "Ledus.S1G334800"
Ledus.S1	AUGUSTUS	CDS	27878043	27878418	1	-	1	transcript_id "Ledus.S1G334800.t1"; gene_id "Ledus.S1G334800"
Ledus.S1	AUGUSTUS	exon	27878043	27878418	.	-	.	transcript_id "Ledus.S1G334800.t1"; gene_id "Ledus.S1G334800"
Ledus.S1	AUGUSTUS	intron	27878419	27878508	.	-	.	transcript_id "Ledus.S1G334800.t1"; gene_id "Ledus.S1G334800"
Ledus.S1	AUGUSTUS	CDS	27878509	27878626	0.76	-	2	transcript_id "Ledus.S1G334800.t1"; gene_id "Ledus.S1G334800"
Ledus.S1	AUGUSTUS	exon	27878509	27878626	.	-	.	transcript_id "Ledus.S1G334800.t1"; gene_id "Ledus.S1G334800"
Ledus.S1	AUGUSTUS	intron	27878627	27878761	.	-	.	transcript_id "Ledus.S1G334800.t1"; gene_id "Ledus.S1G334800"
Ledus.S1	AUGUSTUS	CDS	27878762	27879071	0.58	-	0	transcript_id "Ledus.S1G334800.t1"; gene_id "Ledus.S1G334800"
Ledus.S1	AUGUSTUS	exon	27878762	27879071	.	-	.	transcript_id "Ledus.S1G334800.t1"; gene_id "Ledus.S1G334800"
Ledus.S1	AUGUSTUS	start_codon	27879069	27879071	.	-	0	transcript_id "Ledus.S1G334800.t1"; gene_id "Ledus.S1G334800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3818.t1 is derived from g1254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12635445	12639131	.	+	.	Ledus.S1G123900
Ledus.S1	AUGUSTUS	transcript	12635445	12639103	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	start_codon	12635445	12635447	.	+	0	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12635445	12635483	1	+	0	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12635445	12635483	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12635484	12635747	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12635748	12635777	1	+	0	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12635748	12635777	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12635778	12635867	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12635868	12635966	0.96	+	0	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12635868	12635966	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12635967	12636476	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12636477	12636635	0.58	+	0	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12636477	12636635	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12636636	12636855	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12636856	12636921	0.82	+	0	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12636856	12636921	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12636922	12637180	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12637181	12637501	0.95	+	0	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12637181	12637501	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12637502	12637635	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12637636	12637731	1	+	0	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12637636	12637731	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12637732	12637864	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12637865	12638830	1	+	0	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12637865	12638830	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12638831	12639055	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12639056	12639103	0.98	+	0	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12639056	12639103	.	+	.	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	stop_codon	12639104	12639106	.	+	0	transcript_id "Ledus.S1G123900.t1"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	transcript	12635445	12639131	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	start_codon	12635445	12635447	.	+	0	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12635445	12635483	0.99	+	0	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12635445	12635483	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12635484	12635747	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12635748	12635777	1	+	0	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12635748	12635777	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12635778	12635867	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12635868	12635966	0.92	+	0	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12635868	12635966	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12635967	12636476	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12636477	12636635	0.59	+	0	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12636477	12636635	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12636636	12636855	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12636856	12636921	0.76	+	0	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12636856	12636921	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12636922	12637180	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12637181	12637501	0.96	+	0	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12637181	12637501	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12637502	12637635	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12637636	12637731	1	+	0	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12637636	12637731	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12637732	12637864	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12637865	12638830	1	+	0	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12637865	12638830	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	intron	12638831	12638972	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	CDS	12638973	12639131	0.6	+	0	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	exon	12638973	12639131	.	+	.	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
Ledus.S1	AUGUSTUS	stop_codon	12639132	12639134	.	+	0	transcript_id "Ledus.S1G123900.t2"; gene_id "Ledus.S1G123900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6545.t1 is derived from g3988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32239149	32245980	.	+	.	Ledus.S1G396600
Ledus.S1	AUGUSTUS	transcript	32239544	32245980	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	start_codon	32239544	32239546	.	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32239544	32239619	0.68	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32239544	32239619	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32239620	32239898	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32239899	32239989	1	+	2	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32239899	32239989	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32239990	32240189	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32240190	32240278	0.96	+	1	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32240190	32240278	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32240279	32240587	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32240588	32240634	0.95	+	2	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32240588	32240634	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32240635	32240776	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32240777	32241524	0.6	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32240777	32241524	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32241525	32241709	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32241710	32241846	1	+	2	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32241710	32241846	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32241847	32241983	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32241984	32242133	1	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32241984	32242133	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32242134	32242285	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32242286	32242387	1	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32242286	32242387	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32242388	32242521	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32242522	32242686	0.82	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32242522	32242686	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32242687	32242794	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32242795	32242905	1	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32242795	32242905	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32242906	32243000	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32243001	32243222	1	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32243001	32243222	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32243223	32243305	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32243306	32243395	1	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32243306	32243395	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32243396	32243471	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32243472	32243516	1	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32243472	32243516	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32243517	32243606	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32243607	32243927	0.76	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32243607	32243927	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32243928	32244028	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32244029	32244053	0.47	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32244029	32244053	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32244054	32244408	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32244409	32244693	0.47	+	2	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32244409	32244693	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32244694	32244794	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32244795	32244938	0.98	+	2	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32244795	32244938	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32244939	32245024	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32245025	32245980	1	+	2	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32245025	32245980	.	+	.	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	stop_codon	32245981	32245983	.	+	0	transcript_id "Ledus.S1G396600.t1"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	transcript	32239149	32242414	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	start_codon	32239149	32239151	.	+	0	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32239149	32239206	0.93	+	0	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32239149	32239206	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32239207	32239424	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32239425	32239619	0.96	+	2	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32239425	32239619	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32239620	32239898	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32239899	32239989	1	+	2	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32239899	32239989	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32239990	32240189	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32240190	32240278	0.99	+	1	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32240190	32240278	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32240279	32240587	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32240588	32240634	0.99	+	2	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32240588	32240634	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32240635	32240776	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32240777	32241524	0.51	+	0	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32240777	32241524	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32241525	32241709	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32241710	32241846	0.92	+	2	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32241710	32241846	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32241847	32241983	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32241984	32242133	0.79	+	0	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32241984	32242133	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	intron	32242134	32242285	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	CDS	32242286	32242414	0.55	+	0	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	exon	32242286	32242414	.	+	.	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
Ledus.S1	AUGUSTUS	stop_codon	32242415	32242417	.	+	0	transcript_id "Ledus.S1G396600.t2"; gene_id "Ledus.S1G396600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10615.t1 is derived from g11645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16456305	16459172	.	+	.	Ledus.S3G209200
Ledus.S3	AUGUSTUS	transcript	16456305	16459172	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	start_codon	16456305	16456307	.	+	0	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16456305	16456428	0.91	+	0	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16456305	16456428	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16456429	16456508	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16456509	16456738	1	+	2	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16456509	16456738	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16456739	16456812	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16456813	16456917	0.96	+	0	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16456813	16456917	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16456918	16457018	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16457019	16457090	1	+	0	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16457019	16457090	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16457091	16457231	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16457232	16457318	1	+	0	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16457232	16457318	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16457319	16457445	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16457446	16457597	1	+	0	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16457446	16457597	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16457598	16457685	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16457686	16457760	0.56	+	1	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16457686	16457760	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16457761	16457872	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16457873	16457906	0.8	+	1	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16457873	16457906	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16457907	16458125	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16458126	16458192	1	+	0	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16458126	16458192	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16458193	16458314	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16458315	16458391	1	+	2	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16458315	16458391	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16458392	16458506	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16458507	16458567	1	+	0	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16458507	16458567	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16458568	16458648	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16458649	16458731	1	+	2	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16458649	16458731	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16458732	16458820	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16458821	16458892	1	+	0	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16458821	16458892	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	intron	16458893	16459007	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	CDS	16459008	16459172	0.95	+	0	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	exon	16459008	16459172	.	+	.	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
Ledus.S3	AUGUSTUS	stop_codon	16459173	16459175	.	+	0	transcript_id "Ledus.S3G209200.t1"; gene_id "Ledus.S3G209200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg364.t1 is derived from g7225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1954939	1956017	.	+	.	Ledus.S2G024600
Ledus.S2	AUGUSTUS	transcript	1954939	1956017	.	+	.	transcript_id "Ledus.S2G024600.t1"; gene_id "Ledus.S2G024600"
Ledus.S2	AUGUSTUS	start_codon	1954939	1954941	.	+	0	transcript_id "Ledus.S2G024600.t1"; gene_id "Ledus.S2G024600"
Ledus.S2	AUGUSTUS	CDS	1954939	1955175	1	+	0	transcript_id "Ledus.S2G024600.t1"; gene_id "Ledus.S2G024600"
Ledus.S2	AUGUSTUS	exon	1954939	1955175	.	+	.	transcript_id "Ledus.S2G024600.t1"; gene_id "Ledus.S2G024600"
Ledus.S2	AUGUSTUS	intron	1955176	1955264	.	+	.	transcript_id "Ledus.S2G024600.t1"; gene_id "Ledus.S2G024600"
Ledus.S2	AUGUSTUS	CDS	1955265	1956017	0.99	+	0	transcript_id "Ledus.S2G024600.t1"; gene_id "Ledus.S2G024600"
Ledus.S2	AUGUSTUS	exon	1955265	1956017	.	+	.	transcript_id "Ledus.S2G024600.t1"; gene_id "Ledus.S2G024600"
Ledus.S2	AUGUSTUS	stop_codon	1956018	1956020	.	+	0	transcript_id "Ledus.S2G024600.t1"; gene_id "Ledus.S2G024600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9379.t1 is derived from g10409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6446112	6446507	.	+	.	Ledus.S3G085600
Ledus.S3	AUGUSTUS	transcript	6446112	6446507	.	+	.	transcript_id "Ledus.S3G085600.t1"; gene_id "Ledus.S3G085600"
Ledus.S3	AUGUSTUS	start_codon	6446112	6446114	.	+	0	transcript_id "Ledus.S3G085600.t1"; gene_id "Ledus.S3G085600"
Ledus.S3	AUGUSTUS	CDS	6446112	6446507	0.38	+	0	transcript_id "Ledus.S3G085600.t1"; gene_id "Ledus.S3G085600"
Ledus.S3	AUGUSTUS	exon	6446112	6446507	.	+	.	transcript_id "Ledus.S3G085600.t1"; gene_id "Ledus.S3G085600"
Ledus.S3	AUGUSTUS	stop_codon	6446508	6446510	.	+	0	transcript_id "Ledus.S3G085600.t1"; gene_id "Ledus.S3G085600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3684.t1 is derived from g1120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10839990	10840356	.	+	.	Ledus.S1G110500
Ledus.S1	AUGUSTUS	transcript	10839990	10840356	.	+	.	transcript_id "Ledus.S1G110500.t1"; gene_id "Ledus.S1G110500"
Ledus.S1	AUGUSTUS	start_codon	10839990	10839992	.	+	0	transcript_id "Ledus.S1G110500.t1"; gene_id "Ledus.S1G110500"
Ledus.S1	AUGUSTUS	CDS	10839990	10840108	0.29	+	0	transcript_id "Ledus.S1G110500.t1"; gene_id "Ledus.S1G110500"
Ledus.S1	AUGUSTUS	exon	10839990	10840108	.	+	.	transcript_id "Ledus.S1G110500.t1"; gene_id "Ledus.S1G110500"
Ledus.S1	AUGUSTUS	intron	10840109	10840208	.	+	.	transcript_id "Ledus.S1G110500.t1"; gene_id "Ledus.S1G110500"
Ledus.S1	AUGUSTUS	CDS	10840209	10840356	0.29	+	1	transcript_id "Ledus.S1G110500.t1"; gene_id "Ledus.S1G110500"
Ledus.S1	AUGUSTUS	exon	10840209	10840356	.	+	.	transcript_id "Ledus.S1G110500.t1"; gene_id "Ledus.S1G110500"
Ledus.S1	AUGUSTUS	stop_codon	10840357	10840359	.	+	0	transcript_id "Ledus.S1G110500.t1"; gene_id "Ledus.S1G110500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11200.t1 is derived from g4818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2687216	2690217	.	+	.	Ledus.S4G035600
Ledus.S4	AUGUSTUS	transcript	2687216	2690217	.	+	.	transcript_id "Ledus.S4G035600.t1"; gene_id "Ledus.S4G035600"
Ledus.S4	AUGUSTUS	start_codon	2687216	2687218	.	+	0	transcript_id "Ledus.S4G035600.t1"; gene_id "Ledus.S4G035600"
Ledus.S4	AUGUSTUS	CDS	2687216	2688286	0.7	+	0	transcript_id "Ledus.S4G035600.t1"; gene_id "Ledus.S4G035600"
Ledus.S4	AUGUSTUS	exon	2687216	2688286	.	+	.	transcript_id "Ledus.S4G035600.t1"; gene_id "Ledus.S4G035600"
Ledus.S4	AUGUSTUS	intron	2688287	2688355	.	+	.	transcript_id "Ledus.S4G035600.t1"; gene_id "Ledus.S4G035600"
Ledus.S4	AUGUSTUS	CDS	2688356	2689585	1	+	0	transcript_id "Ledus.S4G035600.t1"; gene_id "Ledus.S4G035600"
Ledus.S4	AUGUSTUS	exon	2688356	2689585	.	+	.	transcript_id "Ledus.S4G035600.t1"; gene_id "Ledus.S4G035600"
Ledus.S4	AUGUSTUS	intron	2689586	2689665	.	+	.	transcript_id "Ledus.S4G035600.t1"; gene_id "Ledus.S4G035600"
Ledus.S4	AUGUSTUS	CDS	2689666	2690217	1	+	0	transcript_id "Ledus.S4G035600.t1"; gene_id "Ledus.S4G035600"
Ledus.S4	AUGUSTUS	exon	2689666	2690217	.	+	.	transcript_id "Ledus.S4G035600.t1"; gene_id "Ledus.S4G035600"
Ledus.S4	AUGUSTUS	stop_codon	2690218	2690220	.	+	0	transcript_id "Ledus.S4G035600.t1"; gene_id "Ledus.S4G035600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4046.t1 is derived from g1482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14308096	14309748	.	-	.	Ledus.S1G146700
Ledus.S1	AUGUSTUS	transcript	14308096	14309748	.	-	.	transcript_id "Ledus.S1G146700.t1"; gene_id "Ledus.S1G146700"
Ledus.S1	AUGUSTUS	stop_codon	14308093	14308095	.	-	0	transcript_id "Ledus.S1G146700.t1"; gene_id "Ledus.S1G146700"
Ledus.S1	AUGUSTUS	CDS	14308096	14309748	1	-	0	transcript_id "Ledus.S1G146700.t1"; gene_id "Ledus.S1G146700"
Ledus.S1	AUGUSTUS	exon	14308096	14309748	.	-	.	transcript_id "Ledus.S1G146700.t1"; gene_id "Ledus.S1G146700"
Ledus.S1	AUGUSTUS	start_codon	14309746	14309748	.	-	0	transcript_id "Ledus.S1G146700.t1"; gene_id "Ledus.S1G146700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5056.t1 is derived from g2495.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21331499	21335164	.	-	.	Ledus.S1G247700
Ledus.S1	AUGUSTUS	transcript	21331499	21335164	.	-	.	transcript_id "Ledus.S1G247700.t1"; gene_id "Ledus.S1G247700"
Ledus.S1	AUGUSTUS	stop_codon	21331496	21331498	.	-	0	transcript_id "Ledus.S1G247700.t1"; gene_id "Ledus.S1G247700"
Ledus.S1	AUGUSTUS	CDS	21331499	21334767	0.99	-	2	transcript_id "Ledus.S1G247700.t1"; gene_id "Ledus.S1G247700"
Ledus.S1	AUGUSTUS	exon	21331499	21334767	.	-	.	transcript_id "Ledus.S1G247700.t1"; gene_id "Ledus.S1G247700"
Ledus.S1	AUGUSTUS	intron	21334768	21334854	.	-	.	transcript_id "Ledus.S1G247700.t1"; gene_id "Ledus.S1G247700"
Ledus.S1	AUGUSTUS	CDS	21334855	21335164	0.5	-	0	transcript_id "Ledus.S1G247700.t1"; gene_id "Ledus.S1G247700"
Ledus.S1	AUGUSTUS	exon	21334855	21335164	.	-	.	transcript_id "Ledus.S1G247700.t1"; gene_id "Ledus.S1G247700"
Ledus.S1	AUGUSTUS	start_codon	21335162	21335164	.	-	0	transcript_id "Ledus.S1G247700.t1"; gene_id "Ledus.S1G247700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6262.t1 is derived from g3705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29955649	29956163	.	+	.	Ledus.S1G368300
Ledus.S1	AUGUSTUS	transcript	29955649	29956163	.	+	.	transcript_id "Ledus.S1G368300.t1"; gene_id "Ledus.S1G368300"
Ledus.S1	AUGUSTUS	start_codon	29955649	29955651	.	+	0	transcript_id "Ledus.S1G368300.t1"; gene_id "Ledus.S1G368300"
Ledus.S1	AUGUSTUS	CDS	29955649	29955825	0.86	+	0	transcript_id "Ledus.S1G368300.t1"; gene_id "Ledus.S1G368300"
Ledus.S1	AUGUSTUS	exon	29955649	29955825	.	+	.	transcript_id "Ledus.S1G368300.t1"; gene_id "Ledus.S1G368300"
Ledus.S1	AUGUSTUS	intron	29955826	29955917	.	+	.	transcript_id "Ledus.S1G368300.t1"; gene_id "Ledus.S1G368300"
Ledus.S1	AUGUSTUS	CDS	29955918	29956163	0.78	+	0	transcript_id "Ledus.S1G368300.t1"; gene_id "Ledus.S1G368300"
Ledus.S1	AUGUSTUS	exon	29955918	29956163	.	+	.	transcript_id "Ledus.S1G368300.t1"; gene_id "Ledus.S1G368300"
Ledus.S1	AUGUSTUS	stop_codon	29956164	29956166	.	+	0	transcript_id "Ledus.S1G368300.t1"; gene_id "Ledus.S1G368300"
# This transcript jg12629.t2 is derived from g6251.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12630.t1 is derived from g6252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13372004	13381301	.	-	.	Ledus.S4G178600
Ledus.S4	AUGUSTUS	transcript	13372004	13381301	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	stop_codon	13372001	13372003	.	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13372004	13372044	1	-	2	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13372004	13372044	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13372045	13372270	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13372271	13372290	0.91	-	1	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13372271	13372290	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13372291	13372427	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13372428	13372444	0.81	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13372428	13372444	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13372445	13372561	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13372562	13372711	0.49	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13372562	13372711	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13372712	13372820	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13372821	13372949	0.92	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13372821	13372949	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13372950	13373041	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13373042	13373110	1	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13373042	13373110	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13373111	13373234	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13373235	13373315	1	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13373235	13373315	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13373316	13373409	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13373410	13373514	1	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13373410	13373514	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13373515	13373808	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13373809	13374039	1	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13373809	13374039	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13374040	13374249	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13374250	13375917	0.97	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13374250	13375917	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13375918	13376079	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13376080	13376115	1	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13376080	13376115	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13376116	13376207	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13376208	13376309	1	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13376208	13376309	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13376310	13376399	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13376400	13377921	0.96	-	1	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13376400	13377921	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13377922	13378079	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13378080	13378201	0.97	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13378080	13378201	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13378202	13378302	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13378303	13378551	0.92	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13378303	13378551	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13378552	13378781	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13378782	13378946	1	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13378782	13378946	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13378947	13379033	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13379034	13379213	1	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13379034	13379213	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13379214	13379293	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13379294	13379410	1	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13379294	13379410	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13379411	13379533	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13379534	13379644	1	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13379534	13379644	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13379645	13379981	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13379982	13380948	0.92	-	1	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13379982	13380948	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	intron	13380949	13381062	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	CDS	13381063	13381301	0.71	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	exon	13381063	13381301	.	-	.	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
Ledus.S4	AUGUSTUS	start_codon	13381299	13381301	.	-	0	transcript_id "Ledus.S4G178600.t1"; gene_id "Ledus.S4G178600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12262.t1 is derived from g5882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10697318	10699060	.	-	.	Ledus.S4G141800
Ledus.S4	AUGUSTUS	transcript	10697318	10699060	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	stop_codon	10697315	10697317	.	-	0	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	CDS	10697318	10697429	0.82	-	1	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	exon	10697318	10697429	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	intron	10697430	10697525	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	CDS	10697526	10697535	0.82	-	2	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	exon	10697526	10697535	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	intron	10697536	10697658	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	CDS	10697659	10697721	0.82	-	2	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	exon	10697659	10697721	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	intron	10697722	10697817	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	CDS	10697818	10697872	1	-	0	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	exon	10697818	10697872	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	intron	10697873	10697963	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	CDS	10697964	10698119	1	-	0	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	exon	10697964	10698119	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	intron	10698120	10698218	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	CDS	10698219	10698451	1	-	2	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	exon	10698219	10698451	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	intron	10698452	10698540	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	CDS	10698541	10698796	1	-	0	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	exon	10698541	10698796	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	intron	10698797	10698874	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	CDS	10698875	10699060	1	-	0	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	exon	10698875	10699060	.	-	.	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
Ledus.S4	AUGUSTUS	start_codon	10699058	10699060	.	-	0	transcript_id "Ledus.S4G141800.t1"; gene_id "Ledus.S4G141800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13018.t1 is derived from g6828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3138371	3138766	.	-	.	Ledus.S6G008000
Ledus.S6	AUGUSTUS	transcript	3138371	3138766	.	-	.	transcript_id "Ledus.S6G008000.t1"; gene_id "Ledus.S6G008000"
Ledus.S6	AUGUSTUS	stop_codon	3138368	3138370	.	-	0	transcript_id "Ledus.S6G008000.t1"; gene_id "Ledus.S6G008000"
Ledus.S6	AUGUSTUS	CDS	3138371	3138766	0.88	-	0	transcript_id "Ledus.S6G008000.t1"; gene_id "Ledus.S6G008000"
Ledus.S6	AUGUSTUS	exon	3138371	3138766	.	-	.	transcript_id "Ledus.S6G008000.t1"; gene_id "Ledus.S6G008000"
Ledus.S6	AUGUSTUS	start_codon	3138764	3138766	.	-	0	transcript_id "Ledus.S6G008000.t1"; gene_id "Ledus.S6G008000"
# This transcript jg3251.t1 is derived from g686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7131432	7132094	.	-	.	Ledus.S1G067200
Ledus.S1	AUGUSTUS	transcript	7131432	7132094	.	-	.	transcript_id "Ledus.S1G067200.t1"; gene_id "Ledus.S1G067200"
Ledus.S1	AUGUSTUS	stop_codon	7131429	7131431	.	-	0	transcript_id "Ledus.S1G067200.t1"; gene_id "Ledus.S1G067200"
Ledus.S1	AUGUSTUS	CDS	7131432	7131523	0.97	-	2	transcript_id "Ledus.S1G067200.t1"; gene_id "Ledus.S1G067200"
Ledus.S1	AUGUSTUS	exon	7131432	7131523	.	-	.	transcript_id "Ledus.S1G067200.t1"; gene_id "Ledus.S1G067200"
Ledus.S1	AUGUSTUS	intron	7131524	7131610	.	-	.	transcript_id "Ledus.S1G067200.t1"; gene_id "Ledus.S1G067200"
Ledus.S1	AUGUSTUS	CDS	7131611	7131707	0.97	-	0	transcript_id "Ledus.S1G067200.t1"; gene_id "Ledus.S1G067200"
Ledus.S1	AUGUSTUS	exon	7131611	7131707	.	-	.	transcript_id "Ledus.S1G067200.t1"; gene_id "Ledus.S1G067200"
Ledus.S1	AUGUSTUS	intron	7131708	7131878	.	-	.	transcript_id "Ledus.S1G067200.t1"; gene_id "Ledus.S1G067200"
Ledus.S1	AUGUSTUS	CDS	7131879	7132094	0.9	-	0	transcript_id "Ledus.S1G067200.t1"; gene_id "Ledus.S1G067200"
Ledus.S1	AUGUSTUS	exon	7131879	7132094	.	-	.	transcript_id "Ledus.S1G067200.t1"; gene_id "Ledus.S1G067200"
Ledus.S1	AUGUSTUS	start_codon	7132092	7132094	.	-	0	transcript_id "Ledus.S1G067200.t1"; gene_id "Ledus.S1G067200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1352.t1 is derived from g8213.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9418675	9423066	.	-	.	Ledus.S2G123400
Ledus.S2	AUGUSTUS	transcript	9418675	9423066	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	stop_codon	9418672	9418674	.	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9418675	9418782	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9418675	9418782	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9418783	9418879	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9418880	9418987	0.96	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9418880	9418987	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9418988	9419106	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9419107	9419196	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9419107	9419196	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9419197	9419335	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9419336	9419404	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9419336	9419404	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9419405	9419476	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9419477	9419530	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9419477	9419530	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9419531	9419625	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9419626	9419699	1	-	2	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9419626	9419699	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9419700	9419788	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9419789	9419852	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9419789	9419852	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9419853	9419956	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9419957	9420085	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9419957	9420085	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9420086	9420244	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9420245	9420298	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9420245	9420298	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9420299	9420473	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9420474	9420530	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9420474	9420530	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9420531	9420652	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9420653	9420719	1	-	1	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9420653	9420719	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9420720	9420798	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9420799	9420859	0.53	-	2	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9420799	9420859	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9420860	9420968	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9420969	9421041	0.98	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9420969	9421041	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9421042	9421168	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9421169	9421217	1	-	1	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9421169	9421217	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9421218	9421315	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9421316	9421400	1	-	2	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9421316	9421400	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9421401	9421493	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9421494	9421561	0.99	-	1	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9421494	9421561	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9421562	9421683	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9421684	9421726	0.95	-	2	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9421684	9421726	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9421727	9421830	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9421831	9421927	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9421831	9421927	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9421928	9422006	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9422007	9422162	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9422007	9422162	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9422163	9422263	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9422264	9422311	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9422264	9422311	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9422312	9422410	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9422411	9422492	1	-	1	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9422411	9422492	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9422493	9422623	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9422624	9422700	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9422624	9422700	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9422701	9422789	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9422790	9422858	1	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9422790	9422858	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	intron	9422859	9422988	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	CDS	9422989	9423066	0.96	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	exon	9422989	9423066	.	-	.	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
Ledus.S2	AUGUSTUS	start_codon	9423064	9423066	.	-	0	transcript_id "Ledus.S2G123400.t1"; gene_id "Ledus.S2G123400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7486.t1 is derived from g12157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3335846	3336043	.	-	.	Ledus.S5G026400
Ledus.S5	AUGUSTUS	transcript	3335846	3336043	.	-	.	transcript_id "Ledus.S5G026400.t1"; gene_id "Ledus.S5G026400"
Ledus.S5	AUGUSTUS	stop_codon	3335843	3335845	.	-	0	transcript_id "Ledus.S5G026400.t1"; gene_id "Ledus.S5G026400"
Ledus.S5	AUGUSTUS	CDS	3335846	3336043	0.83	-	0	transcript_id "Ledus.S5G026400.t1"; gene_id "Ledus.S5G026400"
Ledus.S5	AUGUSTUS	exon	3335846	3336043	.	-	.	transcript_id "Ledus.S5G026400.t1"; gene_id "Ledus.S5G026400"
Ledus.S5	AUGUSTUS	start_codon	3336041	3336043	.	-	0	transcript_id "Ledus.S5G026400.t1"; gene_id "Ledus.S5G026400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8326.t1 is derived from g12998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10767188	10768739	.	+	.	Ledus.S5G110400
Ledus.S5	AUGUSTUS	transcript	10767188	10768739	.	+	.	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	start_codon	10767188	10767190	.	+	0	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	CDS	10767188	10767441	1	+	0	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	exon	10767188	10767441	.	+	.	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	intron	10767442	10767516	.	+	.	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	CDS	10767517	10767629	0.94	+	1	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	exon	10767517	10767629	.	+	.	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	intron	10767630	10767734	.	+	.	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	CDS	10767735	10767853	1	+	2	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	exon	10767735	10767853	.	+	.	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	intron	10767854	10768048	.	+	.	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	CDS	10768049	10768097	1	+	0	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	exon	10768049	10768097	.	+	.	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	intron	10768098	10768173	.	+	.	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	CDS	10768174	10768401	0.56	+	2	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	exon	10768174	10768401	.	+	.	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	intron	10768402	10768578	.	+	.	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	CDS	10768579	10768739	0.52	+	2	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	exon	10768579	10768739	.	+	.	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
Ledus.S5	AUGUSTUS	stop_codon	10768740	10768742	.	+	0	transcript_id "Ledus.S5G110400.t1"; gene_id "Ledus.S5G110400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8323.t1 is derived from g12995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10737032	10737304	.	+	.	Ledus.S5G110100
Ledus.S5	AUGUSTUS	transcript	10737032	10737304	.	+	.	transcript_id "Ledus.S5G110100.t1"; gene_id "Ledus.S5G110100"
Ledus.S5	AUGUSTUS	start_codon	10737032	10737034	.	+	0	transcript_id "Ledus.S5G110100.t1"; gene_id "Ledus.S5G110100"
Ledus.S5	AUGUSTUS	CDS	10737032	10737304	0.61	+	0	transcript_id "Ledus.S5G110100.t1"; gene_id "Ledus.S5G110100"
Ledus.S5	AUGUSTUS	exon	10737032	10737304	.	+	.	transcript_id "Ledus.S5G110100.t1"; gene_id "Ledus.S5G110100"
Ledus.S5	AUGUSTUS	stop_codon	10737305	10737307	.	+	0	transcript_id "Ledus.S5G110100.t1"; gene_id "Ledus.S5G110100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10074.t1 is derived from g11104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12526702	12528468	.	-	.	Ledus.S3G155100
Ledus.S3	AUGUSTUS	transcript	12526702	12528468	.	-	.	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	stop_codon	12526699	12526701	.	-	0	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	CDS	12526702	12526922	1	-	2	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	exon	12526702	12526922	.	-	.	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	intron	12526923	12527019	.	-	.	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	CDS	12527020	12527489	1	-	1	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	exon	12527020	12527489	.	-	.	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	intron	12527490	12527587	.	-	.	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	CDS	12527588	12527896	1	-	1	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	exon	12527588	12527896	.	-	.	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	intron	12527897	12527998	.	-	.	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	CDS	12527999	12528104	1	-	2	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	exon	12527999	12528104	.	-	.	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	intron	12528105	12528196	.	-	.	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	CDS	12528197	12528327	1	-	1	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	exon	12528197	12528327	.	-	.	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	intron	12528328	12528400	.	-	.	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	CDS	12528401	12528468	0.36	-	0	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	exon	12528401	12528468	.	-	.	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
Ledus.S3	AUGUSTUS	start_codon	12528466	12528468	.	-	0	transcript_id "Ledus.S3G155100.t1"; gene_id "Ledus.S3G155100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1115.t1 is derived from g7976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7616630	7618230	.	+	.	Ledus.S2G099700
Ledus.S2	AUGUSTUS	transcript	7616630	7618230	.	+	.	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	start_codon	7616630	7616632	.	+	0	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	CDS	7616630	7617081	0.89	+	0	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	exon	7616630	7617081	.	+	.	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	intron	7617082	7617160	.	+	.	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	CDS	7617161	7617411	1	+	1	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	exon	7617161	7617411	.	+	.	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	intron	7617412	7617498	.	+	.	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	CDS	7617499	7617800	1	+	2	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	exon	7617499	7617800	.	+	.	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	intron	7617801	7617883	.	+	.	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	CDS	7617884	7618002	1	+	0	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	exon	7617884	7618002	.	+	.	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	intron	7618003	7618088	.	+	.	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	CDS	7618089	7618230	0.98	+	1	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	exon	7618089	7618230	.	+	.	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
Ledus.S2	AUGUSTUS	stop_codon	7618231	7618233	.	+	0	transcript_id "Ledus.S2G099700.t1"; gene_id "Ledus.S2G099700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4557.t1 is derived from g1994.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17668380	17669228	.	+	.	Ledus.S1G197800
Ledus.S1	AUGUSTUS	transcript	17668380	17669228	.	+	.	transcript_id "Ledus.S1G197800.t1"; gene_id "Ledus.S1G197800"
Ledus.S1	AUGUSTUS	start_codon	17668380	17668382	.	+	0	transcript_id "Ledus.S1G197800.t1"; gene_id "Ledus.S1G197800"
Ledus.S1	AUGUSTUS	CDS	17668380	17669228	0.68	+	0	transcript_id "Ledus.S1G197800.t1"; gene_id "Ledus.S1G197800"
Ledus.S1	AUGUSTUS	exon	17668380	17669228	.	+	.	transcript_id "Ledus.S1G197800.t1"; gene_id "Ledus.S1G197800"
Ledus.S1	AUGUSTUS	stop_codon	17669229	17669231	.	+	0	transcript_id "Ledus.S1G197800.t1"; gene_id "Ledus.S1G197800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg774.t1 is derived from g7635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4906382	4907303	.	+	.	Ledus.S2G065600
Ledus.S2	AUGUSTUS	transcript	4906382	4907303	.	+	.	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	start_codon	4906382	4906384	.	+	0	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	CDS	4906382	4906496	0.96	+	0	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	exon	4906382	4906496	.	+	.	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	intron	4906497	4906611	.	+	.	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	CDS	4906612	4906760	0.95	+	2	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	exon	4906612	4906760	.	+	.	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	intron	4906761	4906834	.	+	.	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	CDS	4906835	4906981	1	+	0	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	exon	4906835	4906981	.	+	.	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	intron	4906982	4907057	.	+	.	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	CDS	4907058	4907303	0.99	+	0	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	exon	4907058	4907303	.	+	.	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
Ledus.S2	AUGUSTUS	stop_codon	4907304	4907306	.	+	0	transcript_id "Ledus.S2G065600.t1"; gene_id "Ledus.S2G065600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6775.t1 is derived from g4219.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34044751	34046518	.	+	.	Ledus.S1G419600
Ledus.S1	AUGUSTUS	transcript	34044751	34046518	.	+	.	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	start_codon	34044751	34044753	.	+	0	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	CDS	34044751	34044911	0.81	+	0	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	exon	34044751	34044911	.	+	.	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	intron	34044912	34045051	.	+	.	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	CDS	34045052	34045232	1	+	1	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	exon	34045052	34045232	.	+	.	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	intron	34045233	34045339	.	+	.	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	CDS	34045340	34045603	0.86	+	0	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	exon	34045340	34045603	.	+	.	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	intron	34045604	34045689	.	+	.	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	CDS	34045690	34045771	1	+	0	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	exon	34045690	34045771	.	+	.	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	intron	34045772	34045892	.	+	.	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	CDS	34045893	34046089	1	+	2	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	exon	34045893	34046089	.	+	.	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	intron	34046090	34046215	.	+	.	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	CDS	34046216	34046518	1	+	0	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	exon	34046216	34046518	.	+	.	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
Ledus.S1	AUGUSTUS	stop_codon	34046519	34046521	.	+	0	transcript_id "Ledus.S1G419600.t1"; gene_id "Ledus.S1G419600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7615.t1 is derived from g12286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4382365	4383399	.	-	.	Ledus.S5G039300
Ledus.S5	AUGUSTUS	transcript	4382365	4383399	.	-	.	transcript_id "Ledus.S5G039300.t1"; gene_id "Ledus.S5G039300"
Ledus.S5	AUGUSTUS	stop_codon	4382362	4382364	.	-	0	transcript_id "Ledus.S5G039300.t1"; gene_id "Ledus.S5G039300"
Ledus.S5	AUGUSTUS	CDS	4382365	4382678	0.54	-	2	transcript_id "Ledus.S5G039300.t1"; gene_id "Ledus.S5G039300"
Ledus.S5	AUGUSTUS	exon	4382365	4382678	.	-	.	transcript_id "Ledus.S5G039300.t1"; gene_id "Ledus.S5G039300"
Ledus.S5	AUGUSTUS	intron	4382679	4382766	.	-	.	transcript_id "Ledus.S5G039300.t1"; gene_id "Ledus.S5G039300"
Ledus.S5	AUGUSTUS	CDS	4382767	4383142	0.29	-	0	transcript_id "Ledus.S5G039300.t1"; gene_id "Ledus.S5G039300"
Ledus.S5	AUGUSTUS	exon	4382767	4383142	.	-	.	transcript_id "Ledus.S5G039300.t1"; gene_id "Ledus.S5G039300"
Ledus.S5	AUGUSTUS	intron	4383143	4383240	.	-	.	transcript_id "Ledus.S5G039300.t1"; gene_id "Ledus.S5G039300"
Ledus.S5	AUGUSTUS	CDS	4383241	4383399	0.74	-	0	transcript_id "Ledus.S5G039300.t1"; gene_id "Ledus.S5G039300"
Ledus.S5	AUGUSTUS	exon	4383241	4383399	.	-	.	transcript_id "Ledus.S5G039300.t1"; gene_id "Ledus.S5G039300"
Ledus.S5	AUGUSTUS	start_codon	4383397	4383399	.	-	0	transcript_id "Ledus.S5G039300.t1"; gene_id "Ledus.S5G039300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12565.t1 is derived from g6187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12887101	12887919	.	-	.	Ledus.S4G172100
Ledus.S4	AUGUSTUS	transcript	12887101	12887919	.	-	.	transcript_id "Ledus.S4G172100.t1"; gene_id "Ledus.S4G172100"
Ledus.S4	AUGUSTUS	stop_codon	12887098	12887100	.	-	0	transcript_id "Ledus.S4G172100.t1"; gene_id "Ledus.S4G172100"
Ledus.S4	AUGUSTUS	CDS	12887101	12887584	1	-	1	transcript_id "Ledus.S4G172100.t1"; gene_id "Ledus.S4G172100"
Ledus.S4	AUGUSTUS	exon	12887101	12887584	.	-	.	transcript_id "Ledus.S4G172100.t1"; gene_id "Ledus.S4G172100"
Ledus.S4	AUGUSTUS	intron	12887585	12887674	.	-	.	transcript_id "Ledus.S4G172100.t1"; gene_id "Ledus.S4G172100"
Ledus.S4	AUGUSTUS	CDS	12887675	12887919	0.92	-	0	transcript_id "Ledus.S4G172100.t1"; gene_id "Ledus.S4G172100"
Ledus.S4	AUGUSTUS	exon	12887675	12887919	.	-	.	transcript_id "Ledus.S4G172100.t1"; gene_id "Ledus.S4G172100"
Ledus.S4	AUGUSTUS	start_codon	12887917	12887919	.	-	0	transcript_id "Ledus.S4G172100.t1"; gene_id "Ledus.S4G172100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7883.t1 is derived from g12554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7611181	7617093	.	-	.	Ledus.S5G066100
Ledus.S5	AUGUSTUS	transcript	7611181	7617093	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	stop_codon	7611178	7611180	.	-	0	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7611181	7611329	0.88	-	2	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7611181	7611329	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7611330	7611476	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7611477	7611507	0.86	-	0	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7611477	7611507	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7611508	7611600	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7611601	7611655	0.88	-	1	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7611601	7611655	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7611656	7611739	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7611740	7611786	0.48	-	0	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7611740	7611786	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7611787	7611921	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7611922	7612013	0.58	-	2	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7611922	7612013	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7612014	7612115	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7612116	7612200	0.28	-	0	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7612116	7612200	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7612201	7612318	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7612319	7612472	0.61	-	1	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7612319	7612472	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7612473	7612700	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7612701	7612767	0.94	-	2	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7612701	7612767	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7612768	7612853	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7612854	7612885	0.44	-	1	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7612854	7612885	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7612886	7613016	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7613017	7613031	0.23	-	1	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7613017	7613031	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7613032	7613405	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7613406	7613452	0.94	-	0	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7613406	7613452	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7613453	7613534	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7613535	7613709	1	-	1	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7613535	7613709	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7613710	7613803	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7613804	7614063	0.67	-	0	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7613804	7614063	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7614064	7614165	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7614166	7614246	0.99	-	0	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7614166	7614246	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7614247	7614356	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7614357	7614438	0.97	-	1	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7614357	7614438	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7614439	7614558	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7614559	7614610	1	-	2	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7614559	7614610	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7614611	7614727	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7614728	7616039	0.85	-	0	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7614728	7616039	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7616040	7616175	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7616176	7616257	1	-	1	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7616176	7616257	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7616258	7616374	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7616375	7616481	1	-	0	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7616375	7616481	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7616482	7616631	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7616632	7616753	1	-	2	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7616632	7616753	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	intron	7616754	7616966	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	CDS	7616967	7617093	0.72	-	0	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	exon	7616967	7617093	.	-	.	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
Ledus.S5	AUGUSTUS	start_codon	7617091	7617093	.	-	0	transcript_id "Ledus.S5G066100.t1"; gene_id "Ledus.S5G066100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6651.t1 is derived from g4094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32889921	32892111	.	-	.	Ledus.S1G407200
Ledus.S1	AUGUSTUS	transcript	32889921	32892111	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	stop_codon	32889918	32889920	.	-	0	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	CDS	32889921	32890007	1	-	0	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	exon	32889921	32890007	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	intron	32890008	32890126	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	CDS	32890127	32890192	1	-	0	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	exon	32890127	32890192	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	intron	32890193	32890324	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	CDS	32890325	32890383	1	-	2	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	exon	32890325	32890383	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	intron	32890384	32890510	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	CDS	32890511	32890598	1	-	0	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	exon	32890511	32890598	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	intron	32890599	32890740	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	CDS	32890741	32890926	1	-	0	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	exon	32890741	32890926	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	intron	32890927	32891098	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	CDS	32891099	32891299	1	-	0	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	exon	32891099	32891299	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	intron	32891300	32891402	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	CDS	32891403	32891570	0.96	-	0	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	exon	32891403	32891570	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	intron	32891571	32891707	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	CDS	32891708	32891789	1	-	1	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	exon	32891708	32891789	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	intron	32891790	32891944	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	CDS	32891945	32892111	0.72	-	0	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	exon	32891945	32892111	.	-	.	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
Ledus.S1	AUGUSTUS	start_codon	32892109	32892111	.	-	0	transcript_id "Ledus.S1G407200.t1"; gene_id "Ledus.S1G407200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1166.t1 is derived from g8027.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8039457	8042752	.	-	.	Ledus.S2G104800
Ledus.S2	AUGUSTUS	transcript	8039457	8042752	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	stop_codon	8039454	8039456	.	-	0	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8039457	8039862	1	-	1	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8039457	8039862	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8039863	8040016	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8040017	8040024	0.54	-	0	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8040017	8040024	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8040025	8040247	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8040248	8040343	0.54	-	0	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8040248	8040343	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8040344	8040451	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8040452	8040960	0.97	-	2	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8040452	8040960	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8040961	8041038	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8041039	8041358	1	-	1	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8041039	8041358	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8041359	8041454	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8041455	8042095	0.99	-	0	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8041455	8042095	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8042096	8042191	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8042192	8042415	1	-	2	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8042192	8042415	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8042416	8042733	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8042734	8042752	0.92	-	0	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8042734	8042752	.	-	.	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	start_codon	8042750	8042752	.	-	0	transcript_id "Ledus.S2G104800.t1"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	transcript	8039457	8042569	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	stop_codon	8039454	8039456	.	-	0	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8039457	8039862	1	-	1	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8039457	8039862	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8039863	8040016	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8040017	8040024	0.44	-	0	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8040017	8040024	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8040025	8040247	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8040248	8040343	0.54	-	0	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8040248	8040343	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8040344	8040451	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8040452	8040960	0.93	-	2	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8040452	8040960	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8040961	8041038	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8041039	8041358	1	-	1	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8041039	8041358	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8041359	8041454	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8041455	8042095	1	-	0	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8041455	8042095	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8042096	8042191	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8042192	8042415	1	-	2	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8042192	8042415	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	intron	8042416	8042508	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	CDS	8042509	8042569	1	-	0	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	exon	8042509	8042569	.	-	.	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
Ledus.S2	AUGUSTUS	start_codon	8042567	8042569	.	-	0	transcript_id "Ledus.S2G104800.t2"; gene_id "Ledus.S2G104800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10649.t1 is derived from g11679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16860398	16862157	.	-	.	Ledus.S3G212600
Ledus.S3	AUGUSTUS	transcript	16860398	16862157	.	-	.	transcript_id "Ledus.S3G212600.t1"; gene_id "Ledus.S3G212600"
Ledus.S3	AUGUSTUS	stop_codon	16860395	16860397	.	-	0	transcript_id "Ledus.S3G212600.t1"; gene_id "Ledus.S3G212600"
Ledus.S3	AUGUSTUS	CDS	16860398	16861246	1	-	0	transcript_id "Ledus.S3G212600.t1"; gene_id "Ledus.S3G212600"
Ledus.S3	AUGUSTUS	exon	16860398	16861246	.	-	.	transcript_id "Ledus.S3G212600.t1"; gene_id "Ledus.S3G212600"
Ledus.S3	AUGUSTUS	intron	16861247	16861327	.	-	.	transcript_id "Ledus.S3G212600.t1"; gene_id "Ledus.S3G212600"
Ledus.S3	AUGUSTUS	CDS	16861328	16861639	0.95	-	0	transcript_id "Ledus.S3G212600.t1"; gene_id "Ledus.S3G212600"
Ledus.S3	AUGUSTUS	exon	16861328	16861639	.	-	.	transcript_id "Ledus.S3G212600.t1"; gene_id "Ledus.S3G212600"
Ledus.S3	AUGUSTUS	intron	16861640	16861725	.	-	.	transcript_id "Ledus.S3G212600.t1"; gene_id "Ledus.S3G212600"
Ledus.S3	AUGUSTUS	CDS	16861726	16862157	0.65	-	0	transcript_id "Ledus.S3G212600.t1"; gene_id "Ledus.S3G212600"
Ledus.S3	AUGUSTUS	exon	16861726	16862157	.	-	.	transcript_id "Ledus.S3G212600.t1"; gene_id "Ledus.S3G212600"
Ledus.S3	AUGUSTUS	start_codon	16862155	16862157	.	-	0	transcript_id "Ledus.S3G212600.t1"; gene_id "Ledus.S3G212600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg235.t1 is derived from g7096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1043483	1046891	.	+	.	Ledus.S2G011700
Ledus.S2	AUGUSTUS	transcript	1043483	1046891	.	+	.	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	start_codon	1043483	1043485	.	+	0	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	CDS	1043483	1043542	0.08	+	0	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	exon	1043483	1043542	.	+	.	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	intron	1043543	1043749	.	+	.	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	CDS	1043750	1043893	0.9	+	0	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	exon	1043750	1043893	.	+	.	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	intron	1043894	1044099	.	+	.	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	CDS	1044100	1044208	1	+	0	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	exon	1044100	1044208	.	+	.	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	intron	1044209	1044291	.	+	.	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	CDS	1044292	1044616	0.56	+	2	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	exon	1044292	1044616	.	+	.	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	intron	1044617	1044757	.	+	.	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	CDS	1044758	1046891	0.52	+	1	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	exon	1044758	1046891	.	+	.	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
Ledus.S2	AUGUSTUS	stop_codon	1046892	1046894	.	+	0	transcript_id "Ledus.S2G011700.t1"; gene_id "Ledus.S2G011700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2782.t1 is derived from g216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3693021	3693425	.	+	.	Ledus.S1G020300
Ledus.S1	AUGUSTUS	transcript	3693021	3693425	.	+	.	transcript_id "Ledus.S1G020300.t1"; gene_id "Ledus.S1G020300"
Ledus.S1	AUGUSTUS	start_codon	3693021	3693023	.	+	0	transcript_id "Ledus.S1G020300.t1"; gene_id "Ledus.S1G020300"
Ledus.S1	AUGUSTUS	CDS	3693021	3693425	1	+	0	transcript_id "Ledus.S1G020300.t1"; gene_id "Ledus.S1G020300"
Ledus.S1	AUGUSTUS	exon	3693021	3693425	.	+	.	transcript_id "Ledus.S1G020300.t1"; gene_id "Ledus.S1G020300"
Ledus.S1	AUGUSTUS	stop_codon	3693426	3693428	.	+	0	transcript_id "Ledus.S1G020300.t1"; gene_id "Ledus.S1G020300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg6653.t1 is derived from g4096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32898035	32902232	.	+	.	Ledus.S1G407400
Ledus.S1	AUGUSTUS	transcript	32898035	32902232	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	start_codon	32898035	32898037	.	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32898035	32898169	1	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32898035	32898169	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32898170	32898263	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32898264	32898350	1	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32898264	32898350	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32898351	32898475	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32898476	32898553	1	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32898476	32898553	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32898554	32898691	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32898692	32898835	1	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32898692	32898835	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32898836	32899078	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32899079	32899156	1	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32899079	32899156	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32899157	32899327	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32899328	32899405	1	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32899328	32899405	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32899406	32899625	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32899626	32899679	1	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32899626	32899679	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32899680	32899897	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32899898	32900001	1	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32899898	32900001	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32900002	32900114	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32900115	32900193	0.99	+	1	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32900115	32900193	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32900194	32900324	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32900325	32900396	1	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32900325	32900396	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32900397	32900524	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32900525	32900617	1	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32900525	32900617	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32900618	32900761	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32900762	32901028	1	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32900762	32901028	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32901029	32901199	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32901200	32901373	1	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32901200	32901373	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32901374	32901539	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32901540	32901959	0.56	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32901540	32901959	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32901960	32902048	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32902049	32902153	0.65	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32902049	32902153	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32902154	32902229	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32902230	32902232	0.82	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32902230	32902232	.	+	.	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	stop_codon	32902233	32902235	.	+	0	transcript_id "Ledus.S1G407400.t1"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	transcript	32898035	32902232	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	start_codon	32898035	32898037	.	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32898035	32898169	1	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32898035	32898169	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32898170	32898263	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32898264	32898350	1	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32898264	32898350	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32898351	32898475	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32898476	32898553	1	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32898476	32898553	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32898554	32898691	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32898692	32898835	1	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32898692	32898835	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32898836	32899078	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32899079	32899156	1	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32899079	32899156	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32899157	32899327	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32899328	32899405	1	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32899328	32899405	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32899406	32899625	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32899626	32899679	1	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32899626	32899679	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32899680	32899897	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32899898	32900001	1	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32899898	32900001	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32900002	32900114	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32900115	32900193	1	+	1	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32900115	32900193	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32900194	32900324	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32900325	32900396	1	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32900325	32900396	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32900397	32900524	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32900525	32900617	1	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32900525	32900617	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32900618	32900761	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32900762	32901028	0.98	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32900762	32901028	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32901029	32901184	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32901185	32901373	0.95	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32901185	32901373	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32901374	32901539	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32901540	32901959	0.48	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32901540	32901959	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32901960	32902048	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32902049	32902153	0.61	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32902049	32902153	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32902154	32902229	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32902230	32902232	0.8	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32902230	32902232	.	+	.	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	stop_codon	32902233	32902235	.	+	0	transcript_id "Ledus.S1G407400.t2"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	transcript	32898035	32902232	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	start_codon	32898035	32898037	.	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32898035	32898169	0.99	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32898035	32898169	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32898170	32898263	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32898264	32898350	1	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32898264	32898350	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32898351	32898475	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32898476	32898553	1	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32898476	32898553	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32898554	32898691	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32898692	32898835	1	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32898692	32898835	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32898836	32899078	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32899079	32899156	1	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32899079	32899156	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32899157	32899327	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32899328	32899405	1	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32899328	32899405	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32899406	32899625	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32899626	32899679	1	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32899626	32899679	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32899680	32899897	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32899898	32900001	1	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32899898	32900001	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32900002	32900114	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32900115	32900193	1	+	1	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32900115	32900193	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32900194	32900324	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32900325	32900396	1	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32900325	32900396	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32900397	32900524	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32900525	32900617	1	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32900525	32900617	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32900618	32900761	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32900762	32901028	0.6	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32900762	32901028	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32901029	32901130	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32901131	32901373	0.5	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32901131	32901373	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32901374	32901539	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32901540	32901959	0.47	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32901540	32901959	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32901960	32902048	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32902049	32902153	0.57	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32902049	32902153	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	intron	32902154	32902229	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	CDS	32902230	32902232	0.8	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	exon	32902230	32902232	.	+	.	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
Ledus.S1	AUGUSTUS	stop_codon	32902233	32902235	.	+	0	transcript_id "Ledus.S1G407400.t3"; gene_id "Ledus.S1G407400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11476.t1 is derived from g5094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4665360	4666001	.	-	.	Ledus.S4G063200
Ledus.S4	AUGUSTUS	transcript	4665360	4666001	.	-	.	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	stop_codon	4665357	4665359	.	-	0	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	CDS	4665360	4665421	1	-	2	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	exon	4665360	4665421	.	-	.	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	intron	4665422	4665519	.	-	.	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	CDS	4665520	4665611	1	-	1	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	exon	4665520	4665611	.	-	.	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	intron	4665612	4665709	.	-	.	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	CDS	4665710	4665827	0.96	-	2	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	exon	4665710	4665827	.	-	.	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	intron	4665828	4665952	.	-	.	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	CDS	4665953	4666001	0.68	-	0	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	exon	4665953	4666001	.	-	.	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
Ledus.S4	AUGUSTUS	start_codon	4665999	4666001	.	-	0	transcript_id "Ledus.S4G063200.t1"; gene_id "Ledus.S4G063200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5597.t1 is derived from g3036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25317732	25318774	.	-	.	Ledus.S1G301800
Ledus.S1	AUGUSTUS	transcript	25317732	25318774	.	-	.	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	stop_codon	25317729	25317731	.	-	0	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	CDS	25317732	25317782	1	-	0	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	exon	25317732	25317782	.	-	.	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	intron	25317783	25317911	.	-	.	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	CDS	25317912	25318024	1	-	2	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	exon	25317912	25318024	.	-	.	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	intron	25318025	25318118	.	-	.	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	CDS	25318119	25318248	1	-	0	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	exon	25318119	25318248	.	-	.	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	intron	25318249	25318399	.	-	.	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	CDS	25318400	25318501	1	-	0	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	exon	25318400	25318501	.	-	.	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	intron	25318502	25318771	.	-	.	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	CDS	25318772	25318774	0.76	-	0	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	exon	25318772	25318774	.	-	.	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
Ledus.S1	AUGUSTUS	start_codon	25318772	25318774	.	-	0	transcript_id "Ledus.S1G301800.t1"; gene_id "Ledus.S1G301800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8416.t1 is derived from g13088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11545901	11547515	.	-	.	Ledus.S5G119400
Ledus.S5	AUGUSTUS	transcript	11545901	11547515	.	-	.	transcript_id "Ledus.S5G119400.t1"; gene_id "Ledus.S5G119400"
Ledus.S5	AUGUSTUS	stop_codon	11545898	11545900	.	-	0	transcript_id "Ledus.S5G119400.t1"; gene_id "Ledus.S5G119400"
Ledus.S5	AUGUSTUS	CDS	11545901	11546180	0.81	-	1	transcript_id "Ledus.S5G119400.t1"; gene_id "Ledus.S5G119400"
Ledus.S5	AUGUSTUS	exon	11545901	11546180	.	-	.	transcript_id "Ledus.S5G119400.t1"; gene_id "Ledus.S5G119400"
Ledus.S5	AUGUSTUS	intron	11546181	11546292	.	-	.	transcript_id "Ledus.S5G119400.t1"; gene_id "Ledus.S5G119400"
Ledus.S5	AUGUSTUS	CDS	11546293	11547515	0.9	-	0	transcript_id "Ledus.S5G119400.t1"; gene_id "Ledus.S5G119400"
Ledus.S5	AUGUSTUS	exon	11546293	11547515	.	-	.	transcript_id "Ledus.S5G119400.t1"; gene_id "Ledus.S5G119400"
Ledus.S5	AUGUSTUS	start_codon	11547513	11547515	.	-	0	transcript_id "Ledus.S5G119400.t1"; gene_id "Ledus.S5G119400"
# This transcript jg3983.t2 is derived from g1419.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3984.t1 is derived from g1420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13914030	13915277	.	+	.	Ledus.S1G140500
Ledus.S1	AUGUSTUS	transcript	13914030	13915277	.	+	.	transcript_id "Ledus.S1G140500.t1"; gene_id "Ledus.S1G140500"
Ledus.S1	AUGUSTUS	start_codon	13914030	13914032	.	+	0	transcript_id "Ledus.S1G140500.t1"; gene_id "Ledus.S1G140500"
Ledus.S1	AUGUSTUS	CDS	13914030	13914072	0.83	+	0	transcript_id "Ledus.S1G140500.t1"; gene_id "Ledus.S1G140500"
Ledus.S1	AUGUSTUS	exon	13914030	13914072	.	+	.	transcript_id "Ledus.S1G140500.t1"; gene_id "Ledus.S1G140500"
Ledus.S1	AUGUSTUS	intron	13914073	13914148	.	+	.	transcript_id "Ledus.S1G140500.t1"; gene_id "Ledus.S1G140500"
Ledus.S1	AUGUSTUS	CDS	13914149	13914199	0.31	+	2	transcript_id "Ledus.S1G140500.t1"; gene_id "Ledus.S1G140500"
Ledus.S1	AUGUSTUS	exon	13914149	13914199	.	+	.	transcript_id "Ledus.S1G140500.t1"; gene_id "Ledus.S1G140500"
Ledus.S1	AUGUSTUS	intron	13914200	13915152	.	+	.	transcript_id "Ledus.S1G140500.t1"; gene_id "Ledus.S1G140500"
Ledus.S1	AUGUSTUS	CDS	13915153	13915277	0.7	+	2	transcript_id "Ledus.S1G140500.t1"; gene_id "Ledus.S1G140500"
Ledus.S1	AUGUSTUS	exon	13915153	13915277	.	+	.	transcript_id "Ledus.S1G140500.t1"; gene_id "Ledus.S1G140500"
Ledus.S1	AUGUSTUS	stop_codon	13915278	13915280	.	+	0	transcript_id "Ledus.S1G140500.t1"; gene_id "Ledus.S1G140500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6834.t1 is derived from g4278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34560849	34563238	.	-	.	Ledus.S1G425500
Ledus.S1	AUGUSTUS	transcript	34560849	34563238	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	stop_codon	34560846	34560848	.	-	0	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	CDS	34560849	34560908	1	-	0	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	exon	34560849	34560908	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	intron	34560909	34560981	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	CDS	34560982	34561028	1	-	2	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	exon	34560982	34561028	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	intron	34561029	34561128	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	CDS	34561129	34561315	1	-	0	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	exon	34561129	34561315	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	intron	34561316	34561408	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	CDS	34561409	34561726	0.91	-	0	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	exon	34561409	34561726	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	intron	34561727	34561862	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	CDS	34561863	34562057	1	-	0	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	exon	34561863	34562057	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	intron	34562058	34562266	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	CDS	34562267	34562368	1	-	0	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	exon	34562267	34562368	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	intron	34562369	34562487	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	CDS	34562488	34562787	1	-	0	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	exon	34562488	34562787	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	intron	34562788	34562893	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	CDS	34562894	34563238	0.72	-	0	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	exon	34562894	34563238	.	-	.	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
Ledus.S1	AUGUSTUS	start_codon	34563236	34563238	.	-	0	transcript_id "Ledus.S1G425500.t1"; gene_id "Ledus.S1G425500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10296.t1 is derived from g11326.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14112571	14113218	.	+	.	Ledus.S3G177300
Ledus.S3	AUGUSTUS	transcript	14112571	14113218	.	+	.	transcript_id "Ledus.S3G177300.t1"; gene_id "Ledus.S3G177300"
Ledus.S3	AUGUSTUS	start_codon	14112571	14112573	.	+	0	transcript_id "Ledus.S3G177300.t1"; gene_id "Ledus.S3G177300"
Ledus.S3	AUGUSTUS	CDS	14112571	14113218	0.71	+	0	transcript_id "Ledus.S3G177300.t1"; gene_id "Ledus.S3G177300"
Ledus.S3	AUGUSTUS	exon	14112571	14113218	.	+	.	transcript_id "Ledus.S3G177300.t1"; gene_id "Ledus.S3G177300"
Ledus.S3	AUGUSTUS	stop_codon	14113219	14113221	.	+	0	transcript_id "Ledus.S3G177300.t1"; gene_id "Ledus.S3G177300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3874.t1 is derived from g1310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13303635	13304645	.	-	.	Ledus.S1G129500
Ledus.S1	AUGUSTUS	transcript	13303635	13304645	.	-	.	transcript_id "Ledus.S1G129500.t1"; gene_id "Ledus.S1G129500"
Ledus.S1	AUGUSTUS	stop_codon	13303632	13303634	.	-	0	transcript_id "Ledus.S1G129500.t1"; gene_id "Ledus.S1G129500"
Ledus.S1	AUGUSTUS	CDS	13303635	13303991	0.82	-	0	transcript_id "Ledus.S1G129500.t1"; gene_id "Ledus.S1G129500"
Ledus.S1	AUGUSTUS	exon	13303635	13303991	.	-	.	transcript_id "Ledus.S1G129500.t1"; gene_id "Ledus.S1G129500"
Ledus.S1	AUGUSTUS	intron	13303992	13304108	.	-	.	transcript_id "Ledus.S1G129500.t1"; gene_id "Ledus.S1G129500"
Ledus.S1	AUGUSTUS	CDS	13304109	13304645	0.99	-	0	transcript_id "Ledus.S1G129500.t1"; gene_id "Ledus.S1G129500"
Ledus.S1	AUGUSTUS	exon	13304109	13304645	.	-	.	transcript_id "Ledus.S1G129500.t1"; gene_id "Ledus.S1G129500"
Ledus.S1	AUGUSTUS	start_codon	13304643	13304645	.	-	0	transcript_id "Ledus.S1G129500.t1"; gene_id "Ledus.S1G129500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3911.t1 is derived from g1347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13533279	13534970	.	+	.	Ledus.S1G133200
Ledus.S1	AUGUSTUS	transcript	13533279	13534970	.	+	.	transcript_id "Ledus.S1G133200.t1"; gene_id "Ledus.S1G133200"
Ledus.S1	AUGUSTUS	start_codon	13533279	13533281	.	+	0	transcript_id "Ledus.S1G133200.t1"; gene_id "Ledus.S1G133200"
Ledus.S1	AUGUSTUS	CDS	13533279	13534970	0.97	+	0	transcript_id "Ledus.S1G133200.t1"; gene_id "Ledus.S1G133200"
Ledus.S1	AUGUSTUS	exon	13533279	13534970	.	+	.	transcript_id "Ledus.S1G133200.t1"; gene_id "Ledus.S1G133200"
Ledus.S1	AUGUSTUS	stop_codon	13534971	13534973	.	+	0	transcript_id "Ledus.S1G133200.t1"; gene_id "Ledus.S1G133200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5559.t1 is derived from g2998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25122783	25124189	.	-	.	Ledus.S1G298000
Ledus.S1	AUGUSTUS	transcript	25122783	25124189	.	-	.	transcript_id "Ledus.S1G298000.t1"; gene_id "Ledus.S1G298000"
Ledus.S1	AUGUSTUS	stop_codon	25122780	25122782	.	-	0	transcript_id "Ledus.S1G298000.t1"; gene_id "Ledus.S1G298000"
Ledus.S1	AUGUSTUS	CDS	25122783	25124189	0.68	-	0	transcript_id "Ledus.S1G298000.t1"; gene_id "Ledus.S1G298000"
Ledus.S1	AUGUSTUS	exon	25122783	25124189	.	-	.	transcript_id "Ledus.S1G298000.t1"; gene_id "Ledus.S1G298000"
Ledus.S1	AUGUSTUS	start_codon	25124187	25124189	.	-	0	transcript_id "Ledus.S1G298000.t1"; gene_id "Ledus.S1G298000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg182.t1 is derived from g7043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	602827	603346	.	+	.	Ledus.S2G006400
Ledus.S2	AUGUSTUS	transcript	602827	603346	.	+	.	transcript_id "Ledus.S2G006400.t1"; gene_id "Ledus.S2G006400"
Ledus.S2	AUGUSTUS	start_codon	602827	602829	.	+	0	transcript_id "Ledus.S2G006400.t1"; gene_id "Ledus.S2G006400"
Ledus.S2	AUGUSTUS	CDS	602827	603166	0.26	+	0	transcript_id "Ledus.S2G006400.t1"; gene_id "Ledus.S2G006400"
Ledus.S2	AUGUSTUS	exon	602827	603166	.	+	.	transcript_id "Ledus.S2G006400.t1"; gene_id "Ledus.S2G006400"
Ledus.S2	AUGUSTUS	intron	603167	603248	.	+	.	transcript_id "Ledus.S2G006400.t1"; gene_id "Ledus.S2G006400"
Ledus.S2	AUGUSTUS	CDS	603249	603346	1	+	2	transcript_id "Ledus.S2G006400.t1"; gene_id "Ledus.S2G006400"
Ledus.S2	AUGUSTUS	exon	603249	603346	.	+	.	transcript_id "Ledus.S2G006400.t1"; gene_id "Ledus.S2G006400"
Ledus.S2	AUGUSTUS	stop_codon	603347	603349	.	+	0	transcript_id "Ledus.S2G006400.t1"; gene_id "Ledus.S2G006400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3581.t1 is derived from g1017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9776884	9778131	.	-	.	Ledus.S1G100200
Ledus.S1	AUGUSTUS	transcript	9776884	9778131	.	-	.	transcript_id "Ledus.S1G100200.t1"; gene_id "Ledus.S1G100200"
Ledus.S1	AUGUSTUS	stop_codon	9776881	9776883	.	-	0	transcript_id "Ledus.S1G100200.t1"; gene_id "Ledus.S1G100200"
Ledus.S1	AUGUSTUS	CDS	9776884	9778131	0.61	-	0	transcript_id "Ledus.S1G100200.t1"; gene_id "Ledus.S1G100200"
Ledus.S1	AUGUSTUS	exon	9776884	9778131	.	-	.	transcript_id "Ledus.S1G100200.t1"; gene_id "Ledus.S1G100200"
Ledus.S1	AUGUSTUS	start_codon	9778129	9778131	.	-	0	transcript_id "Ledus.S1G100200.t1"; gene_id "Ledus.S1G100200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12726.t1 is derived from g6348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14095759	14110566	.	-	.	Ledus.S4G188200
Ledus.S4	AUGUSTUS	transcript	14095759	14110566	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	stop_codon	14095756	14095758	.	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14095759	14095800	0.97	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14095759	14095800	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14095801	14095914	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14095915	14095975	1	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14095915	14095975	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14095976	14096073	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14096074	14096145	1	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14096074	14096145	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14096146	14096249	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14096250	14096299	0.98	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14096250	14096299	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14096300	14096497	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14096498	14096610	1	-	2	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14096498	14096610	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14096611	14096701	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14096702	14096770	0.89	-	2	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14096702	14096770	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14096771	14096847	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14096848	14096912	0.85	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14096848	14096912	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14096913	14096996	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14096997	14097157	0.9	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14096997	14097157	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14097158	14097231	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14097232	14097424	0.98	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14097232	14097424	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14097425	14097548	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14097549	14097655	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14097549	14097655	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14097656	14097742	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14097743	14097952	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14097743	14097952	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14097953	14098062	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14098063	14098236	0.96	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14098063	14098236	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14098237	14098382	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14098383	14098520	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14098383	14098520	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14098521	14098680	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14098681	14098747	1	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14098681	14098747	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14098748	14098866	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14098867	14099027	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14098867	14099027	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14099028	14099257	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14099258	14099306	1	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14099258	14099306	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14099307	14099384	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14099385	14099647	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14099385	14099647	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14099648	14099770	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14099771	14099830	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14099771	14099830	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14099831	14100110	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14100111	14100185	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14100111	14100185	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14100186	14100346	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14100347	14100430	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14100347	14100430	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14100431	14100534	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14100535	14100636	0.8	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14100535	14100636	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14100637	14100718	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14100719	14100851	1	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14100719	14100851	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14100852	14100947	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14100948	14101012	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14100948	14101012	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14101013	14101084	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14101085	14101259	1	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14101085	14101259	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14101260	14101361	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14101362	14101552	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14101362	14101552	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14101553	14101765	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14101766	14101840	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14101766	14101840	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14101841	14101962	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14101963	14102160	0.72	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14101963	14102160	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14102161	14102321	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14102322	14102466	1	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14102322	14102466	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14102467	14102618	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14102619	14103088	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14102619	14103088	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14103089	14103182	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14103183	14103325	1	-	2	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14103183	14103325	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14103326	14103417	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14103418	14103472	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14103418	14103472	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14103473	14103796	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14103797	14103997	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14103797	14103997	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14103998	14104134	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14104135	14104230	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14104135	14104230	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14104231	14104316	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14104317	14104460	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14104317	14104460	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14104461	14104557	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14104558	14104638	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14104558	14104638	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14104639	14104831	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14104832	14104916	1	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14104832	14104916	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14104917	14105055	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14105056	14105232	1	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14105056	14105232	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14105233	14105386	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14105387	14105466	0.91	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14105387	14105466	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14105467	14105579	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14105580	14105685	0.98	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14105580	14105685	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14105686	14105817	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14105818	14105912	0.89	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14105818	14105912	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14105913	14105998	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14105999	14106140	1	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14105999	14106140	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14106141	14106340	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14106341	14106459	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14106341	14106459	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14106460	14106677	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14106678	14106782	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14106678	14106782	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14106783	14106857	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14106858	14106968	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14106858	14106968	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14106969	14107180	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14107181	14107357	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14107181	14107357	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14107358	14107457	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14107458	14107622	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14107458	14107622	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14107623	14107748	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14107749	14107832	0.96	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14107749	14107832	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14107833	14107995	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14107996	14108118	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14107996	14108118	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14108119	14108244	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14108245	14108379	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14108245	14108379	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14108380	14108465	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14108466	14108552	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14108466	14108552	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14108553	14108736	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14108737	14108954	1	-	2	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14108737	14108954	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14108955	14109157	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14109158	14109261	1	-	1	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14109158	14109261	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14109262	14109380	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14109381	14109541	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14109381	14109541	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14109542	14109834	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14109835	14109930	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14109835	14109930	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14109931	14110024	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14110025	14110084	0.99	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14110025	14110084	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14110085	14110198	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14110199	14110264	1	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14110199	14110264	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	intron	14110265	14110359	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	CDS	14110360	14110566	0.85	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	exon	14110360	14110566	.	-	.	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
Ledus.S4	AUGUSTUS	start_codon	14110564	14110566	.	-	0	transcript_id "Ledus.S4G188200.t1"; gene_id "Ledus.S4G188200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8047.t1 is derived from g12718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8782091	8784019	.	-	.	Ledus.S5G082500
Ledus.S5	AUGUSTUS	transcript	8782091	8784019	.	-	.	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	stop_codon	8782088	8782090	.	-	0	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	CDS	8782091	8782170	0.84	-	2	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	exon	8782091	8782170	.	-	.	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	intron	8782171	8782344	.	-	.	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	CDS	8782345	8782388	1	-	1	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	exon	8782345	8782388	.	-	.	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	intron	8782389	8782482	.	-	.	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	CDS	8782483	8782510	1	-	2	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	exon	8782483	8782510	.	-	.	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	intron	8782511	8782612	.	-	.	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	CDS	8782613	8783851	1	-	2	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	exon	8782613	8783851	.	-	.	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	intron	8783852	8783943	.	-	.	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	CDS	8783944	8784019	0.8	-	0	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	exon	8783944	8784019	.	-	.	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
Ledus.S5	AUGUSTUS	start_codon	8784017	8784019	.	-	0	transcript_id "Ledus.S5G082500.t1"; gene_id "Ledus.S5G082500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10575.t1 is derived from g11605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16222068	16222789	.	+	.	Ledus.S3G205200
Ledus.S3	AUGUSTUS	transcript	16222068	16222789	.	+	.	transcript_id "Ledus.S3G205200.t1"; gene_id "Ledus.S3G205200"
Ledus.S3	AUGUSTUS	start_codon	16222068	16222070	.	+	0	transcript_id "Ledus.S3G205200.t1"; gene_id "Ledus.S3G205200"
Ledus.S3	AUGUSTUS	CDS	16222068	16222143	0.42	+	0	transcript_id "Ledus.S3G205200.t1"; gene_id "Ledus.S3G205200"
Ledus.S3	AUGUSTUS	exon	16222068	16222143	.	+	.	transcript_id "Ledus.S3G205200.t1"; gene_id "Ledus.S3G205200"
Ledus.S3	AUGUSTUS	intron	16222144	16222338	.	+	.	transcript_id "Ledus.S3G205200.t1"; gene_id "Ledus.S3G205200"
Ledus.S3	AUGUSTUS	CDS	16222339	16222432	0.75	+	2	transcript_id "Ledus.S3G205200.t1"; gene_id "Ledus.S3G205200"
Ledus.S3	AUGUSTUS	exon	16222339	16222432	.	+	.	transcript_id "Ledus.S3G205200.t1"; gene_id "Ledus.S3G205200"
Ledus.S3	AUGUSTUS	intron	16222433	16222503	.	+	.	transcript_id "Ledus.S3G205200.t1"; gene_id "Ledus.S3G205200"
Ledus.S3	AUGUSTUS	CDS	16222504	16222789	1	+	1	transcript_id "Ledus.S3G205200.t1"; gene_id "Ledus.S3G205200"
Ledus.S3	AUGUSTUS	exon	16222504	16222789	.	+	.	transcript_id "Ledus.S3G205200.t1"; gene_id "Ledus.S3G205200"
Ledus.S3	AUGUSTUS	stop_codon	16222790	16222792	.	+	0	transcript_id "Ledus.S3G205200.t1"; gene_id "Ledus.S3G205200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7366.t1 is derived from g12037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1545171	1547364	.	-	.	Ledus.S5G014400
Ledus.S5	AUGUSTUS	transcript	1545171	1547364	.	-	.	transcript_id "Ledus.S5G014400.t1"; gene_id "Ledus.S5G014400"
Ledus.S5	AUGUSTUS	stop_codon	1545168	1545170	.	-	0	transcript_id "Ledus.S5G014400.t1"; gene_id "Ledus.S5G014400"
Ledus.S5	AUGUSTUS	CDS	1545171	1545871	0.79	-	2	transcript_id "Ledus.S5G014400.t1"; gene_id "Ledus.S5G014400"
Ledus.S5	AUGUSTUS	exon	1545171	1545871	.	-	.	transcript_id "Ledus.S5G014400.t1"; gene_id "Ledus.S5G014400"
Ledus.S5	AUGUSTUS	intron	1545872	1545953	.	-	.	transcript_id "Ledus.S5G014400.t1"; gene_id "Ledus.S5G014400"
Ledus.S5	AUGUSTUS	CDS	1545954	1547364	0.82	-	0	transcript_id "Ledus.S5G014400.t1"; gene_id "Ledus.S5G014400"
Ledus.S5	AUGUSTUS	exon	1545954	1547364	.	-	.	transcript_id "Ledus.S5G014400.t1"; gene_id "Ledus.S5G014400"
Ledus.S5	AUGUSTUS	start_codon	1547362	1547364	.	-	0	transcript_id "Ledus.S5G014400.t1"; gene_id "Ledus.S5G014400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8386.t1 is derived from g13058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11429232	11431486	.	+	.	Ledus.S5G116400
Ledus.S5	AUGUSTUS	transcript	11429232	11431486	.	+	.	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	start_codon	11429232	11429234	.	+	0	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	CDS	11429232	11429582	1	+	0	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	exon	11429232	11429582	.	+	.	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	intron	11429583	11429710	.	+	.	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	CDS	11429711	11429845	1	+	0	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	exon	11429711	11429845	.	+	.	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	intron	11429846	11430113	.	+	.	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	CDS	11430114	11430274	1	+	0	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	exon	11430114	11430274	.	+	.	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	intron	11430275	11430364	.	+	.	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	CDS	11430365	11431029	1	+	1	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	exon	11430365	11431029	.	+	.	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	intron	11431030	11431208	.	+	.	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	CDS	11431209	11431399	1	+	2	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	exon	11431209	11431399	.	+	.	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	intron	11431400	11431480	.	+	.	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	CDS	11431481	11431486	1	+	0	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	exon	11431481	11431486	.	+	.	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
Ledus.S5	AUGUSTUS	stop_codon	11431487	11431489	.	+	0	transcript_id "Ledus.S5G116400.t1"; gene_id "Ledus.S5G116400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7539.t1 is derived from g12210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3734710	3739281	.	-	.	Ledus.S5G031700
Ledus.S5	AUGUSTUS	transcript	3735494	3739281	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	stop_codon	3735491	3735493	.	-	0	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3735494	3735532	1	-	0	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3735494	3735532	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3735533	3735618	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3735619	3735727	1	-	1	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3735619	3735727	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3735728	3735857	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3735858	3735952	1	-	0	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3735858	3735952	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3735953	3736044	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3736045	3736134	1	-	0	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3736045	3736134	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3736135	3736230	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3736231	3736437	1	-	0	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3736231	3736437	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3736438	3736578	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3736579	3736908	0.56	-	0	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3736579	3736908	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3736909	3737012	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3737013	3737315	0.6	-	0	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3737013	3737315	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3737316	3737601	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3737602	3737988	1	-	0	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3737602	3737988	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3737989	3738108	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3738109	3738183	1	-	0	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3738109	3738183	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3738184	3738271	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3738272	3738363	1	-	2	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3738272	3738363	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3738364	3738561	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3738562	3738622	1	-	0	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3738562	3738622	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3738623	3738750	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3738751	3738868	1	-	1	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3738751	3738868	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3738869	3739038	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3739039	3739099	1	-	2	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3739039	3739099	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3739100	3739160	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3739161	3739281	0.25	-	0	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3739161	3739281	.	-	.	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	start_codon	3739279	3739281	.	-	0	transcript_id "Ledus.S5G031700.t1"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	transcript	3734710	3739281	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	stop_codon	3734707	3734709	.	-	0	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3734710	3734807	0.59	-	2	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3734710	3734807	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3734808	3735224	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3735225	3735532	0.58	-	1	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3735225	3735532	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3735533	3735610	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3735611	3735727	1	-	1	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3735611	3735727	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3735728	3735857	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3735858	3735952	1	-	0	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3735858	3735952	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3735953	3736044	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3736045	3736134	1	-	0	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3736045	3736134	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3736135	3736230	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3736231	3736437	1	-	0	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3736231	3736437	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3736438	3736578	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3736579	3736908	0.64	-	0	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3736579	3736908	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3736909	3737012	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3737013	3737315	0.69	-	0	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3737013	3737315	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3737316	3737601	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3737602	3737988	1	-	0	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3737602	3737988	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3737989	3738108	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3738109	3738183	1	-	0	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3738109	3738183	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3738184	3738271	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3738272	3738363	1	-	2	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3738272	3738363	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3738364	3738561	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3738562	3738622	1	-	0	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3738562	3738622	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3738623	3738750	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3738751	3738868	1	-	1	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3738751	3738868	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3738869	3739038	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3739039	3739099	1	-	2	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3739039	3739099	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	intron	3739100	3739160	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	CDS	3739161	3739281	0.38	-	0	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	exon	3739161	3739281	.	-	.	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
Ledus.S5	AUGUSTUS	start_codon	3739279	3739281	.	-	0	transcript_id "Ledus.S5G031700.t2"; gene_id "Ledus.S5G031700"
# This transcript jg8634.t2 is derived from g9664.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8634.t3 is derived from g9664.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8635.t1 is derived from g9665.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	936700	937431	.	+	.	Ledus.S3G011200
Ledus.S3	AUGUSTUS	transcript	936700	937431	.	+	.	transcript_id "Ledus.S3G011200.t1"; gene_id "Ledus.S3G011200"
Ledus.S3	AUGUSTUS	start_codon	936700	936702	.	+	0	transcript_id "Ledus.S3G011200.t1"; gene_id "Ledus.S3G011200"
Ledus.S3	AUGUSTUS	CDS	936700	936736	0.91	+	0	transcript_id "Ledus.S3G011200.t1"; gene_id "Ledus.S3G011200"
Ledus.S3	AUGUSTUS	exon	936700	936736	.	+	.	transcript_id "Ledus.S3G011200.t1"; gene_id "Ledus.S3G011200"
Ledus.S3	AUGUSTUS	intron	936737	936805	.	+	.	transcript_id "Ledus.S3G011200.t1"; gene_id "Ledus.S3G011200"
Ledus.S3	AUGUSTUS	CDS	936806	936888	0.7	+	2	transcript_id "Ledus.S3G011200.t1"; gene_id "Ledus.S3G011200"
Ledus.S3	AUGUSTUS	exon	936806	936888	.	+	.	transcript_id "Ledus.S3G011200.t1"; gene_id "Ledus.S3G011200"
Ledus.S3	AUGUSTUS	intron	936889	937296	.	+	.	transcript_id "Ledus.S3G011200.t1"; gene_id "Ledus.S3G011200"
Ledus.S3	AUGUSTUS	CDS	937297	937431	0.71	+	0	transcript_id "Ledus.S3G011200.t1"; gene_id "Ledus.S3G011200"
Ledus.S3	AUGUSTUS	exon	937297	937431	.	+	.	transcript_id "Ledus.S3G011200.t1"; gene_id "Ledus.S3G011200"
Ledus.S3	AUGUSTUS	stop_codon	937432	937434	.	+	0	transcript_id "Ledus.S3G011200.t1"; gene_id "Ledus.S3G011200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4933.t1 is derived from g2371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20743211	20746863	.	-	.	Ledus.S1G235400
Ledus.S1	AUGUSTUS	transcript	20743211	20746863	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	stop_codon	20743208	20743210	.	-	0	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20743211	20743297	1	-	0	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20743211	20743297	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20743298	20743386	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20743387	20743572	1	-	0	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20743387	20743572	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20743573	20743654	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20743655	20743753	1	-	0	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20743655	20743753	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20743754	20743838	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20743839	20744070	1	-	1	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20743839	20744070	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20744071	20744179	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20744180	20744257	0.98	-	1	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20744180	20744257	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20744258	20744352	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20744353	20744600	1	-	0	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20744353	20744600	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20744601	20744681	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20744682	20744798	1	-	0	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20744682	20744798	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20744799	20744974	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20744975	20745109	1	-	0	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20744975	20745109	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20745110	20745222	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20745223	20745309	1	-	0	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20745223	20745309	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20745310	20745427	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20745428	20745613	0.5	-	0	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20745428	20745613	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20745614	20745723	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20745724	20745958	0.37	-	1	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20745724	20745958	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20745959	20746054	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20746055	20746247	0.98	-	2	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20746055	20746247	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20746248	20746335	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20746336	20746429	0.97	-	0	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20746336	20746429	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	intron	20746430	20746542	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	CDS	20746543	20746863	0.94	-	0	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	exon	20746543	20746863	.	-	.	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
Ledus.S1	AUGUSTUS	start_codon	20746861	20746863	.	-	0	transcript_id "Ledus.S1G235400.t1"; gene_id "Ledus.S1G235400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11791.t1 is derived from g5410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6808133	6808532	.	-	.	Ledus.S4G094700
Ledus.S4	AUGUSTUS	transcript	6808133	6808532	.	-	.	transcript_id "Ledus.S4G094700.t1"; gene_id "Ledus.S4G094700"
Ledus.S4	AUGUSTUS	stop_codon	6808130	6808132	.	-	0	transcript_id "Ledus.S4G094700.t1"; gene_id "Ledus.S4G094700"
Ledus.S4	AUGUSTUS	CDS	6808133	6808309	0.72	-	0	transcript_id "Ledus.S4G094700.t1"; gene_id "Ledus.S4G094700"
Ledus.S4	AUGUSTUS	exon	6808133	6808309	.	-	.	transcript_id "Ledus.S4G094700.t1"; gene_id "Ledus.S4G094700"
Ledus.S4	AUGUSTUS	intron	6808310	6808400	.	-	.	transcript_id "Ledus.S4G094700.t1"; gene_id "Ledus.S4G094700"
Ledus.S4	AUGUSTUS	CDS	6808401	6808532	0.73	-	0	transcript_id "Ledus.S4G094700.t1"; gene_id "Ledus.S4G094700"
Ledus.S4	AUGUSTUS	exon	6808401	6808532	.	-	.	transcript_id "Ledus.S4G094700.t1"; gene_id "Ledus.S4G094700"
Ledus.S4	AUGUSTUS	start_codon	6808530	6808532	.	-	0	transcript_id "Ledus.S4G094700.t1"; gene_id "Ledus.S4G094700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10097.t1 is derived from g11127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12613288	12613961	.	+	.	Ledus.S3G157400
Ledus.S3	AUGUSTUS	transcript	12613288	12613961	.	+	.	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	start_codon	12613288	12613290	.	+	0	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	CDS	12613288	12613442	0.83	+	0	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	exon	12613288	12613442	.	+	.	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	intron	12613443	12613520	.	+	.	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	CDS	12613521	12613594	1	+	1	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	exon	12613521	12613594	.	+	.	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	intron	12613595	12613689	.	+	.	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	CDS	12613690	12613788	0.85	+	2	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	exon	12613690	12613788	.	+	.	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	intron	12613789	12613899	.	+	.	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	CDS	12613900	12613961	0.63	+	2	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	exon	12613900	12613961	.	+	.	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
Ledus.S3	AUGUSTUS	stop_codon	12613962	12613964	.	+	0	transcript_id "Ledus.S3G157400.t1"; gene_id "Ledus.S3G157400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8510.t1 is derived from g13182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12375100	12379976	.	-	.	Ledus.S5G128800
Ledus.S5	AUGUSTUS	transcript	12375100	12379976	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	stop_codon	12375097	12375099	.	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12375100	12375557	0.86	-	2	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12375100	12375557	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12375558	12375658	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12375659	12375786	0.88	-	1	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12375659	12375786	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12375787	12375898	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12375899	12376116	1	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12375899	12376116	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12376117	12376210	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12376211	12376346	1	-	1	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12376211	12376346	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12376347	12376472	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12376473	12376567	1	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12376473	12376567	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12376568	12376737	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12376738	12376932	1	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12376738	12376932	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12376933	12377054	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12377055	12377253	1	-	1	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12377055	12377253	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12377254	12377353	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12377354	12377418	1	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12377354	12377418	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12377419	12377515	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12377516	12377610	1	-	2	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12377516	12377610	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12377611	12377712	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12377713	12377794	0.99	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12377713	12377794	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12377795	12377910	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12377911	12377979	1	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12377911	12377979	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12377980	12378109	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12378110	12378229	1	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12378110	12378229	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12378230	12378348	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12378349	12378477	1	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12378349	12378477	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12378478	12378596	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12378597	12378672	1	-	1	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12378597	12378672	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12378673	12378830	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12378831	12379006	1	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12378831	12379006	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12379007	12379192	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12379193	12379354	1	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12379193	12379354	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	intron	12379355	12379505	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	CDS	12379506	12379976	0.91	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	exon	12379506	12379976	.	-	.	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
Ledus.S5	AUGUSTUS	start_codon	12379974	12379976	.	-	0	transcript_id "Ledus.S5G128800.t1"; gene_id "Ledus.S5G128800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5754.t1 is derived from g3194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26492760	26498611	.	-	.	Ledus.S1G317500
Ledus.S1	AUGUSTUS	transcript	26492760	26498611	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	stop_codon	26492757	26492759	.	-	0	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	CDS	26492760	26493055	1	-	2	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	exon	26492760	26493055	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	intron	26493056	26493233	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	CDS	26493234	26493361	1	-	1	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	exon	26493234	26493361	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	intron	26493362	26493681	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	CDS	26493682	26493918	0.97	-	1	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	exon	26493682	26493918	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	intron	26493919	26494023	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	CDS	26494024	26495107	0.96	-	2	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	exon	26494024	26495107	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	intron	26495108	26495451	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	CDS	26495452	26496968	0.98	-	1	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	exon	26495452	26496968	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	intron	26496969	26497138	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	CDS	26497139	26497224	1	-	0	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	exon	26497139	26497224	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	intron	26497225	26497576	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	CDS	26497577	26497732	0.91	-	0	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	exon	26497577	26497732	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	intron	26497733	26497802	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	CDS	26497803	26497820	0.93	-	0	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	exon	26497803	26497820	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	intron	26497821	26498152	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	CDS	26498153	26498213	0.95	-	1	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	exon	26498153	26498213	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	intron	26498214	26498516	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	CDS	26498517	26498611	0.52	-	0	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	exon	26498517	26498611	.	-	.	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
Ledus.S1	AUGUSTUS	start_codon	26498609	26498611	.	-	0	transcript_id "Ledus.S1G317500.t1"; gene_id "Ledus.S1G317500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5216.t1 is derived from g2655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22500168	22500530	.	+	.	Ledus.S1G263700
Ledus.S1	AUGUSTUS	transcript	22500168	22500530	.	+	.	transcript_id "Ledus.S1G263700.t1"; gene_id "Ledus.S1G263700"
Ledus.S1	AUGUSTUS	start_codon	22500168	22500170	.	+	0	transcript_id "Ledus.S1G263700.t1"; gene_id "Ledus.S1G263700"
Ledus.S1	AUGUSTUS	CDS	22500168	22500530	1	+	0	transcript_id "Ledus.S1G263700.t1"; gene_id "Ledus.S1G263700"
Ledus.S1	AUGUSTUS	exon	22500168	22500530	.	+	.	transcript_id "Ledus.S1G263700.t1"; gene_id "Ledus.S1G263700"
Ledus.S1	AUGUSTUS	stop_codon	22500531	22500533	.	+	0	transcript_id "Ledus.S1G263700.t1"; gene_id "Ledus.S1G263700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1291.t1 is derived from g8152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9104852	9105049	.	+	.	Ledus.S2G117300
Ledus.S2	AUGUSTUS	transcript	9104852	9105049	.	+	.	transcript_id "Ledus.S2G117300.t1"; gene_id "Ledus.S2G117300"
Ledus.S2	AUGUSTUS	start_codon	9104852	9104854	.	+	0	transcript_id "Ledus.S2G117300.t1"; gene_id "Ledus.S2G117300"
Ledus.S2	AUGUSTUS	CDS	9104852	9105049	0.99	+	0	transcript_id "Ledus.S2G117300.t1"; gene_id "Ledus.S2G117300"
Ledus.S2	AUGUSTUS	exon	9104852	9105049	.	+	.	transcript_id "Ledus.S2G117300.t1"; gene_id "Ledus.S2G117300"
Ledus.S2	AUGUSTUS	stop_codon	9105050	9105052	.	+	0	transcript_id "Ledus.S2G117300.t1"; gene_id "Ledus.S2G117300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5163.t1 is derived from g2602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22043755	22046767	.	-	.	Ledus.S1G258400
Ledus.S1	AUGUSTUS	transcript	22043755	22046767	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	stop_codon	22043752	22043754	.	-	0	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	CDS	22043755	22044076	0.61	-	1	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	exon	22043755	22044076	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	intron	22044077	22044208	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	CDS	22044209	22044246	0.73	-	0	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	exon	22044209	22044246	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	intron	22044247	22044345	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	CDS	22044346	22044450	1	-	0	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	exon	22044346	22044450	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	intron	22044451	22044640	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	CDS	22044641	22044765	1	-	2	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	exon	22044641	22044765	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	intron	22044766	22044931	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	CDS	22044932	22044977	1	-	0	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	exon	22044932	22044977	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	intron	22044978	22045068	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	CDS	22045069	22045164	1	-	0	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	exon	22045069	22045164	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	intron	22045165	22045323	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	CDS	22045324	22045499	1	-	2	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	exon	22045324	22045499	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	intron	22045500	22045681	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	CDS	22045682	22045846	1	-	2	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	exon	22045682	22045846	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	intron	22045847	22045935	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	CDS	22045936	22046127	0.97	-	2	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	exon	22045936	22046127	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	intron	22046128	22046215	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	CDS	22046216	22046255	0.61	-	0	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	exon	22046216	22046255	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	intron	22046256	22046428	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	CDS	22046429	22046517	0.66	-	2	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	exon	22046429	22046517	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	intron	22046518	22046745	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	CDS	22046746	22046767	1	-	0	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	exon	22046746	22046767	.	-	.	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
Ledus.S1	AUGUSTUS	start_codon	22046765	22046767	.	-	0	transcript_id "Ledus.S1G258400.t1"; gene_id "Ledus.S1G258400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5582.t1 is derived from g3021.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25254734	25257092	.	+	.	Ledus.S1G300300
Ledus.S1	AUGUSTUS	transcript	25254734	25257092	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	start_codon	25254734	25254736	.	+	0	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	CDS	25254734	25254819	0.51	+	0	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	exon	25254734	25254819	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	intron	25254820	25254902	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	CDS	25254903	25255031	0.48	+	1	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	exon	25254903	25255031	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	intron	25255032	25255109	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	CDS	25255110	25255257	1	+	1	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	exon	25255110	25255257	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	intron	25255258	25255374	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	CDS	25255375	25255448	1	+	0	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	exon	25255375	25255448	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	intron	25255449	25255634	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	CDS	25255635	25255658	1	+	1	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	exon	25255635	25255658	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	intron	25255659	25255755	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	CDS	25255756	25255852	1	+	1	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	exon	25255756	25255852	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	intron	25255853	25256009	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	CDS	25256010	25256115	1	+	0	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	exon	25256010	25256115	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	intron	25256116	25256236	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	CDS	25256237	25256319	1	+	2	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	exon	25256237	25256319	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	intron	25256320	25256448	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	CDS	25256449	25256594	1	+	0	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	exon	25256449	25256594	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	intron	25256595	25256702	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	CDS	25256703	25256808	1	+	1	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	exon	25256703	25256808	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	intron	25256809	25256920	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	CDS	25256921	25256980	1	+	0	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	exon	25256921	25256980	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	intron	25256981	25257074	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	CDS	25257075	25257092	1	+	0	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	exon	25257075	25257092	.	+	.	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
Ledus.S1	AUGUSTUS	stop_codon	25257093	25257095	.	+	0	transcript_id "Ledus.S1G300300.t1"; gene_id "Ledus.S1G300300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10961.t1 is derived from g4579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	913864	914835	.	-	.	Ledus.S4G011700
Ledus.S4	AUGUSTUS	transcript	913864	914835	.	-	.	transcript_id "Ledus.S4G011700.t1"; gene_id "Ledus.S4G011700"
Ledus.S4	AUGUSTUS	stop_codon	913861	913863	.	-	0	transcript_id "Ledus.S4G011700.t1"; gene_id "Ledus.S4G011700"
Ledus.S4	AUGUSTUS	CDS	913864	914835	0.9	-	0	transcript_id "Ledus.S4G011700.t1"; gene_id "Ledus.S4G011700"
Ledus.S4	AUGUSTUS	exon	913864	914835	.	-	.	transcript_id "Ledus.S4G011700.t1"; gene_id "Ledus.S4G011700"
Ledus.S4	AUGUSTUS	start_codon	914833	914835	.	-	0	transcript_id "Ledus.S4G011700.t1"; gene_id "Ledus.S4G011700"
# This transcript jg2154.t2 is derived from g9017.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2155.t1 is derived from g9018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15316025	15317718	.	+	.	Ledus.S2G203700
Ledus.S2	AUGUSTUS	transcript	15316025	15317718	.	+	.	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	start_codon	15316025	15316027	.	+	0	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	CDS	15316025	15316196	0.7	+	0	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	exon	15316025	15316196	.	+	.	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	intron	15316197	15316311	.	+	.	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	CDS	15316312	15316430	0.76	+	2	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	exon	15316312	15316430	.	+	.	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	intron	15316431	15316821	.	+	.	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	CDS	15316822	15317019	0.55	+	0	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	exon	15316822	15317019	.	+	.	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	intron	15317020	15317103	.	+	.	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	CDS	15317104	15317718	0.79	+	0	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	exon	15317104	15317718	.	+	.	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
Ledus.S2	AUGUSTUS	stop_codon	15317719	15317721	.	+	0	transcript_id "Ledus.S2G203700.t1"; gene_id "Ledus.S2G203700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6049.t1 is derived from g3492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28693516	28703500	.	+	.	Ledus.S1G347000
Ledus.S1	AUGUSTUS	transcript	28693516	28703500	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	start_codon	28693516	28693518	.	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28693516	28693665	0.72	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28693516	28693665	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28693666	28693758	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28693759	28693884	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28693759	28693884	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28693885	28693979	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28693980	28694021	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28693980	28694021	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28694022	28694213	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28694214	28694273	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28694214	28694273	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28694274	28694427	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28694428	28694490	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28694428	28694490	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28694491	28694678	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28694679	28694759	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28694679	28694759	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28694760	28694879	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28694880	28694954	0.99	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28694880	28694954	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28694955	28695094	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28695095	28695142	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28695095	28695142	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28695143	28695281	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28695282	28695350	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28695282	28695350	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28695351	28695478	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28695479	28695612	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28695479	28695612	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28695613	28695740	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28695741	28695816	1	+	1	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28695741	28695816	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28695817	28695942	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28695943	28696136	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28695943	28696136	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28696137	28696225	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28696226	28696306	1	+	1	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28696226	28696306	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28696307	28696453	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28696454	28696646	1	+	1	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28696454	28696646	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28696647	28696741	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28696742	28696978	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28696742	28696978	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28696979	28697105	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28697106	28697186	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28697106	28697186	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28697187	28697382	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28697383	28697502	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28697383	28697502	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28697503	28697592	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28697593	28697652	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28697593	28697652	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28697653	28697820	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28697821	28697948	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28697821	28697948	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28697949	28698077	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28698078	28698174	1	+	1	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28698078	28698174	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28698175	28698335	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28698336	28698464	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28698336	28698464	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28698465	28698614	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28698615	28698730	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28698615	28698730	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28698731	28698833	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28698834	28699014	0.85	+	1	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28698834	28699014	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28699015	28699112	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28699113	28699282	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28699113	28699282	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28699283	28699480	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28699481	28700087	0.8	+	1	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28699481	28700087	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28700088	28700182	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28700183	28700287	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28700183	28700287	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28700288	28700450	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28700451	28700606	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28700451	28700606	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28700607	28700718	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28700719	28700799	1	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28700719	28700799	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28700800	28700963	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28700964	28701464	0.98	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28700964	28701464	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28701465	28701624	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28701625	28702947	0.28	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28701625	28702947	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	intron	28702948	28703029	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	CDS	28703030	28703500	0.81	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	exon	28703030	28703500	.	+	.	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
Ledus.S1	AUGUSTUS	stop_codon	28703501	28703503	.	+	0	transcript_id "Ledus.S1G347000.t1"; gene_id "Ledus.S1G347000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5741.t1 is derived from g3180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26428349	26429443	.	+	.	Ledus.S1G316200
Ledus.S1	AUGUSTUS	transcript	26428349	26429414	.	+	.	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	start_codon	26428349	26428351	.	+	0	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	CDS	26428349	26428764	1	+	0	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	exon	26428349	26428764	.	+	.	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	intron	26428765	26428852	.	+	.	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	CDS	26428853	26428940	1	+	1	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	exon	26428853	26428940	.	+	.	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	intron	26428941	26429086	.	+	.	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	CDS	26429087	26429183	0.96	+	0	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	exon	26429087	26429183	.	+	.	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	intron	26429184	26429289	.	+	.	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	CDS	26429290	26429414	0.95	+	2	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	exon	26429290	26429414	.	+	.	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	stop_codon	26429415	26429417	.	+	0	transcript_id "Ledus.S1G316200.t1"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	transcript	26428349	26429443	.	+	.	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	start_codon	26428349	26428351	.	+	0	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	CDS	26428349	26428764	1	+	0	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	exon	26428349	26428764	.	+	.	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	intron	26428765	26428852	.	+	.	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	CDS	26428853	26428940	1	+	1	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	exon	26428853	26428940	.	+	.	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	intron	26428941	26429086	.	+	.	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	CDS	26429087	26429223	0.84	+	0	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	exon	26429087	26429223	.	+	.	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	intron	26429224	26429289	.	+	.	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	CDS	26429290	26429443	0.83	+	1	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	exon	26429290	26429443	.	+	.	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
Ledus.S1	AUGUSTUS	stop_codon	26429444	26429446	.	+	0	transcript_id "Ledus.S1G316200.t2"; gene_id "Ledus.S1G316200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg344.t1 is derived from g7205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1834128	1836385	.	-	.	Ledus.S2G022600
Ledus.S2	AUGUSTUS	transcript	1834128	1836385	.	-	.	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	stop_codon	1834125	1834127	.	-	0	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	CDS	1834128	1834268	0.99	-	0	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	exon	1834128	1834268	.	-	.	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	intron	1834269	1834362	.	-	.	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	CDS	1834363	1834482	1	-	0	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	exon	1834363	1834482	.	-	.	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	intron	1834483	1834569	.	-	.	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	CDS	1834570	1834738	1	-	1	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	exon	1834570	1834738	.	-	.	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	intron	1834739	1834852	.	-	.	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	CDS	1834853	1836038	0.83	-	2	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	exon	1834853	1836038	.	-	.	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	intron	1836039	1836096	.	-	.	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	CDS	1836097	1836385	1	-	0	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	exon	1836097	1836385	.	-	.	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
Ledus.S2	AUGUSTUS	start_codon	1836383	1836385	.	-	0	transcript_id "Ledus.S2G022600.t1"; gene_id "Ledus.S2G022600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4783.t1 is derived from g2221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19757690	19758804	.	+	.	Ledus.S1G220400
Ledus.S1	AUGUSTUS	transcript	19757690	19758804	.	+	.	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	start_codon	19757690	19757692	.	+	0	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	CDS	19757690	19758041	0.95	+	0	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	exon	19757690	19758041	.	+	.	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	intron	19758042	19758192	.	+	.	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	CDS	19758193	19758321	0.93	+	2	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	exon	19758193	19758321	.	+	.	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	intron	19758322	19758463	.	+	.	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	CDS	19758464	19758563	0.88	+	2	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	exon	19758464	19758563	.	+	.	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	intron	19758564	19758692	.	+	.	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	CDS	19758693	19758804	0.92	+	1	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	exon	19758693	19758804	.	+	.	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
Ledus.S1	AUGUSTUS	stop_codon	19758805	19758807	.	+	0	transcript_id "Ledus.S1G220400.t1"; gene_id "Ledus.S1G220400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12676.t1 is derived from g6298.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13832069	13835313	.	+	.	Ledus.S4G183200
Ledus.S4	AUGUSTUS	transcript	13832069	13835313	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	start_codon	13832069	13832071	.	+	0	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13832069	13832253	0.98	+	0	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13832069	13832253	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13832254	13832443	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13832444	13832525	1	+	1	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13832444	13832525	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13832526	13832666	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13832667	13832732	1	+	0	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13832667	13832732	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13832733	13832888	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13832889	13832942	1	+	0	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13832889	13832942	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13832943	13833038	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13833039	13833143	1	+	0	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13833039	13833143	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13833144	13833234	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13833235	13833309	1	+	0	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13833235	13833309	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13833310	13833473	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13833474	13833579	1	+	0	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13833474	13833579	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13833580	13833865	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13833866	13833950	1	+	2	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13833866	13833950	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13833951	13834131	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13834132	13834285	1	+	1	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13834132	13834285	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13834286	13834512	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13834513	13834720	1	+	0	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13834513	13834720	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13834721	13834822	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13834823	13834983	0.96	+	2	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13834823	13834983	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13834984	13835088	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13835089	13835313	0.76	+	0	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13835089	13835313	.	+	.	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	stop_codon	13835314	13835316	.	+	0	transcript_id "Ledus.S4G183200.t1"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	transcript	13832069	13835313	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	start_codon	13832069	13832071	.	+	0	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13832069	13832169	0.99	+	0	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13832069	13832169	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13832170	13832443	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13832444	13832525	1	+	1	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13832444	13832525	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13832526	13832666	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13832667	13832732	1	+	0	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13832667	13832732	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13832733	13832888	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13832889	13832942	1	+	0	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13832889	13832942	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13832943	13833038	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13833039	13833143	1	+	0	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13833039	13833143	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13833144	13833234	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13833235	13833309	1	+	0	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13833235	13833309	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13833310	13833473	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13833474	13833579	1	+	0	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13833474	13833579	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13833580	13833865	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13833866	13833950	1	+	2	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13833866	13833950	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13833951	13834131	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13834132	13834285	1	+	1	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13834132	13834285	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13834286	13834512	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13834513	13834720	1	+	0	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13834513	13834720	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13834721	13834822	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13834823	13834983	0.92	+	2	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13834823	13834983	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	intron	13834984	13835088	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	CDS	13835089	13835313	0.76	+	0	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	exon	13835089	13835313	.	+	.	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
Ledus.S4	AUGUSTUS	stop_codon	13835314	13835316	.	+	0	transcript_id "Ledus.S4G183200.t2"; gene_id "Ledus.S4G183200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6057.t1 is derived from g3500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28748908	28751385	.	-	.	Ledus.S1G347800
Ledus.S1	AUGUSTUS	transcript	28748908	28751385	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	stop_codon	28748905	28748907	.	-	0	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	CDS	28748908	28749134	0.28	-	2	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	exon	28748908	28749134	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	intron	28749135	28749225	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	CDS	28749226	28749443	0.4	-	1	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	exon	28749226	28749443	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	intron	28749444	28749809	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	CDS	28749810	28749935	0.6	-	1	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	exon	28749810	28749935	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	intron	28749936	28750088	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	CDS	28750089	28750321	0.46	-	0	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	exon	28750089	28750321	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	intron	28750322	28750404	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	CDS	28750405	28750529	0.47	-	2	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	exon	28750405	28750529	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	intron	28750530	28750637	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	CDS	28750638	28750806	0.94	-	0	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	exon	28750638	28750806	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	intron	28750807	28750888	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	CDS	28750889	28750983	1	-	2	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	exon	28750889	28750983	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	intron	28750984	28751069	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	CDS	28751070	28751385	0.95	-	0	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	exon	28751070	28751385	.	-	.	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
Ledus.S1	AUGUSTUS	start_codon	28751383	28751385	.	-	0	transcript_id "Ledus.S1G347800.t1"; gene_id "Ledus.S1G347800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7045.t1 is derived from g6576.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1007937	1011443	.	-	.	Ledus.C7G010600
Ledus.C7	AUGUSTUS	transcript	1007937	1011443	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	stop_codon	1007934	1007936	.	-	0	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1007937	1007942	1	-	0	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1007937	1007942	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1007943	1008155	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1008156	1008220	0.48	-	2	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1008156	1008220	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1008221	1008313	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1008314	1008327	0.48	-	1	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1008314	1008327	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1008328	1008565	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1008566	1008652	0.61	-	1	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1008566	1008652	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1008653	1008770	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1008771	1008932	0.6	-	1	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1008771	1008932	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1008933	1009096	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1009097	1009318	0.96	-	1	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1009097	1009318	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1009319	1009729	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1009730	1009816	1	-	1	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1009730	1009816	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1009817	1010059	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1010060	1010134	1	-	1	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1010060	1010134	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1010135	1010477	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1010478	1010544	1	-	2	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1010478	1010544	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1010545	1010817	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1010818	1010897	0.97	-	1	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1010818	1010897	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1010898	1010998	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1010999	1011077	0.98	-	2	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1010999	1011077	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1011078	1011367	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1011368	1011443	0.62	-	0	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1011368	1011443	.	-	.	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	start_codon	1011441	1011443	.	-	0	transcript_id "Ledus.C7G010600.t1"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	transcript	1007937	1011443	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	stop_codon	1007934	1007936	.	-	0	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1007937	1007942	1	-	0	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1007937	1007942	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1007943	1008155	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1008156	1008220	0.52	-	2	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1008156	1008220	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1008221	1008313	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1008314	1008327	0.52	-	1	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1008314	1008327	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1008328	1008565	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1008566	1008652	0.52	-	1	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1008566	1008652	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1008653	1008770	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1008771	1008932	0.49	-	1	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1008771	1008932	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1008933	1009096	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1009097	1009342	1	-	1	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1009097	1009342	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1009343	1009729	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1009730	1009816	1	-	1	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1009730	1009816	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1009817	1010059	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1010060	1010134	1	-	1	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1010060	1010134	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1010135	1010477	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1010478	1010544	1	-	2	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1010478	1010544	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1010545	1010817	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1010818	1010897	0.95	-	1	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1010818	1010897	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1010898	1010998	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1010999	1011077	0.99	-	2	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1010999	1011077	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1011078	1011367	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1011368	1011443	0.72	-	0	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1011368	1011443	.	-	.	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	start_codon	1011441	1011443	.	-	0	transcript_id "Ledus.C7G010600.t2"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	transcript	1007937	1011443	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	stop_codon	1007934	1007936	.	-	0	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1007937	1007942	1	-	0	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1007937	1007942	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1007943	1008155	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1008156	1008220	0.48	-	2	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1008156	1008220	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1008221	1008313	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1008314	1008327	0.48	-	1	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1008314	1008327	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1008328	1008565	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1008566	1008652	0.51	-	1	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1008566	1008652	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1008653	1008770	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1008771	1008932	0.48	-	1	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1008771	1008932	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1008933	1009096	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1009097	1009318	0.94	-	1	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1009097	1009318	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1009319	1009729	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1009730	1009804	0.95	-	1	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1009730	1009804	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1009805	1010059	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1010060	1010134	1	-	1	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1010060	1010134	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1010135	1010477	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1010478	1010544	1	-	2	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1010478	1010544	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1010545	1010817	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1010818	1010897	0.98	-	1	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1010818	1010897	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1010898	1010998	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1010999	1011077	0.95	-	2	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1010999	1011077	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	intron	1011078	1011367	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	CDS	1011368	1011443	0.68	-	0	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	exon	1011368	1011443	.	-	.	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
Ledus.C7	AUGUSTUS	start_codon	1011441	1011443	.	-	0	transcript_id "Ledus.C7G010600.t3"; gene_id "Ledus.C7G010600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1807.t1 is derived from g8670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12699224	12702569	.	+	.	Ledus.S2G168900
Ledus.S2	AUGUSTUS	transcript	12699224	12702569	.	+	.	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	start_codon	12699224	12699226	.	+	0	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	CDS	12699224	12699466	1	+	0	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	exon	12699224	12699466	.	+	.	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	intron	12699467	12699553	.	+	.	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	CDS	12699554	12699769	1	+	0	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	exon	12699554	12699769	.	+	.	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	intron	12699770	12699877	.	+	.	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	CDS	12699878	12700118	0.99	+	0	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	exon	12699878	12700118	.	+	.	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	intron	12700119	12700217	.	+	.	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	CDS	12700218	12701975	0.68	+	2	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	exon	12700218	12701975	.	+	.	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	intron	12701976	12702077	.	+	.	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	CDS	12702078	12702160	0.68	+	2	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	exon	12702078	12702160	.	+	.	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	intron	12702161	12702287	.	+	.	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	CDS	12702288	12702569	0.42	+	0	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	exon	12702288	12702569	.	+	.	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
Ledus.S2	AUGUSTUS	stop_codon	12702570	12702572	.	+	0	transcript_id "Ledus.S2G168900.t1"; gene_id "Ledus.S2G168900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8632.t1 is derived from g9662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	922189	926154	.	-	.	Ledus.S3G010900
Ledus.S3	AUGUSTUS	transcript	922189	926154	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	stop_codon	922186	922188	.	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	922189	922274	1	-	2	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	922189	922274	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	922275	922361	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	922362	922490	0.99	-	2	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	922362	922490	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	922491	922600	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	922601	922691	0.99	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	922601	922691	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	922692	922787	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	922788	922862	1	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	922788	922862	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	922863	922966	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	922967	923044	1	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	922967	923044	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	923045	923114	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	923115	923204	0.96	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	923115	923204	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	923205	923313	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	923314	923412	0.88	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	923314	923412	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	923413	923530	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	923531	923584	0.99	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	923531	923584	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	923585	923674	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	923675	923722	1	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	923675	923722	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	923723	923805	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	923806	923904	1	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	923806	923904	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	923905	923984	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	923985	924068	0.98	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	923985	924068	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	924069	924180	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	924181	924252	0.85	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	924181	924252	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	924253	924337	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	924338	924433	1	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	924338	924433	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	924434	924562	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	924563	924628	1	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	924563	924628	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	924629	924712	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	924713	924970	1	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	924713	924970	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	924971	925172	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	925173	925247	1	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	925173	925247	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	925248	925336	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	925337	925457	0.76	-	1	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	925337	925457	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	925458	925588	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	925589	925646	0.58	-	2	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	925589	925646	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	925647	925774	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	925775	925782	0.59	-	1	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	925775	925782	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	intron	925783	926056	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	CDS	926057	926154	0.75	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	exon	926057	926154	.	-	.	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
Ledus.S3	AUGUSTUS	start_codon	926152	926154	.	-	0	transcript_id "Ledus.S3G010900.t1"; gene_id "Ledus.S3G010900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6928.t1 is derived from g4372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35523594	35523929	.	-	.	Ledus.S1G434900
Ledus.S1	AUGUSTUS	transcript	35523594	35523929	.	-	.	transcript_id "Ledus.S1G434900.t1"; gene_id "Ledus.S1G434900"
Ledus.S1	AUGUSTUS	stop_codon	35523591	35523593	.	-	0	transcript_id "Ledus.S1G434900.t1"; gene_id "Ledus.S1G434900"
Ledus.S1	AUGUSTUS	CDS	35523594	35523929	0.34	-	0	transcript_id "Ledus.S1G434900.t1"; gene_id "Ledus.S1G434900"
Ledus.S1	AUGUSTUS	exon	35523594	35523929	.	-	.	transcript_id "Ledus.S1G434900.t1"; gene_id "Ledus.S1G434900"
Ledus.S1	AUGUSTUS	start_codon	35523927	35523929	.	-	0	transcript_id "Ledus.S1G434900.t1"; gene_id "Ledus.S1G434900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg13059.t1 is derived from g6869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4532199	4536547	.	-	.	Ledus.S6G012100
Ledus.S6	AUGUSTUS	transcript	4532199	4536547	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	stop_codon	4532196	4532198	.	-	0	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4532199	4532444	0.98	-	0	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4532199	4532444	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4532445	4532771	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4532772	4532885	1	-	0	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4532772	4532885	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4532886	4533123	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4533124	4533291	1	-	0	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4533124	4533291	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4533292	4533423	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4533424	4533612	1	-	0	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4533424	4533612	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4533613	4533746	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4533747	4533832	1	-	2	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4533747	4533832	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4533833	4534419	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4534420	4534525	1	-	0	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4534420	4534525	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4534526	4535000	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4535001	4535134	1	-	2	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4535001	4535134	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4535135	4535466	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4535467	4535602	1	-	0	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4535467	4535602	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4535603	4536050	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4536051	4536271	1	-	2	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4536051	4536271	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4536272	4536465	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4536466	4536547	0.43	-	0	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4536466	4536547	.	-	.	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	start_codon	4536545	4536547	.	-	0	transcript_id "Ledus.S6G012100.t1"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	transcript	4532199	4536547	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	stop_codon	4532196	4532198	.	-	0	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4532199	4532444	1	-	0	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4532199	4532444	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4532445	4532771	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4532772	4532885	1	-	0	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4532772	4532885	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4532886	4533123	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4533124	4533258	0.95	-	0	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4533124	4533258	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4533259	4533423	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4533424	4533612	1	-	0	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4533424	4533612	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4533613	4533746	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4533747	4533832	1	-	2	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4533747	4533832	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4533833	4534419	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4534420	4534525	1	-	0	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4534420	4534525	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4534526	4535000	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4535001	4535134	1	-	2	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4535001	4535134	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4535135	4535466	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4535467	4535602	1	-	0	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4535467	4535602	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4535603	4536050	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4536051	4536271	1	-	2	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4536051	4536271	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	intron	4536272	4536465	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	CDS	4536466	4536547	0.34	-	0	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	exon	4536466	4536547	.	-	.	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
Ledus.S6	AUGUSTUS	start_codon	4536545	4536547	.	-	0	transcript_id "Ledus.S6G012100.t2"; gene_id "Ledus.S6G012100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1147.t1 is derived from g8008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7936852	7939381	.	-	.	Ledus.S2G102900
Ledus.S2	AUGUSTUS	transcript	7936852	7939381	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	stop_codon	7936849	7936851	.	-	0	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	CDS	7936852	7937640	0.98	-	0	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	exon	7936852	7937640	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	intron	7937641	7937750	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	CDS	7937751	7937933	1	-	0	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	exon	7937751	7937933	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	intron	7937934	7938018	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	CDS	7938019	7938123	0.87	-	0	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	exon	7938019	7938123	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	intron	7938124	7938200	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	CDS	7938201	7938444	0.96	-	1	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	exon	7938201	7938444	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	intron	7938445	7938548	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	CDS	7938549	7938782	1	-	1	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	exon	7938549	7938782	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	intron	7938783	7938868	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	CDS	7938869	7939079	0.94	-	2	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	exon	7938869	7939079	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	intron	7939080	7939158	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	CDS	7939159	7939381	0.66	-	0	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	exon	7939159	7939381	.	-	.	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
Ledus.S2	AUGUSTUS	start_codon	7939379	7939381	.	-	0	transcript_id "Ledus.S2G102900.t1"; gene_id "Ledus.S2G102900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7466.t1 is derived from g12137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2951624	2953875	.	-	.	Ledus.S5G024400
Ledus.S5	AUGUSTUS	transcript	2951624	2953875	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	stop_codon	2951621	2951623	.	-	0	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	CDS	2951624	2951832	0.97	-	2	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	exon	2951624	2951832	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	intron	2951833	2951914	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	CDS	2951915	2952059	1	-	0	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	exon	2951915	2952059	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	intron	2952060	2952156	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	CDS	2952157	2952306	1	-	0	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	exon	2952157	2952306	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	intron	2952307	2952425	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	CDS	2952426	2952592	1	-	2	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	exon	2952426	2952592	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	intron	2952593	2952732	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	CDS	2952733	2952994	0.59	-	0	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	exon	2952733	2952994	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	intron	2952995	2953083	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	CDS	2953084	2953251	0.98	-	0	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	exon	2953084	2953251	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	intron	2953252	2953360	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	CDS	2953361	2953561	0.89	-	0	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	exon	2953361	2953561	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	intron	2953562	2953863	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	CDS	2953864	2953875	0.85	-	0	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	exon	2953864	2953875	.	-	.	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
Ledus.S5	AUGUSTUS	start_codon	2953873	2953875	.	-	0	transcript_id "Ledus.S5G024400.t1"; gene_id "Ledus.S5G024400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13101.t1 is derived from g6911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5576780	5577022	.	+	.	Ledus.S6G016300
Ledus.S6	AUGUSTUS	transcript	5576780	5577022	.	+	.	transcript_id "Ledus.S6G016300.t1"; gene_id "Ledus.S6G016300"
Ledus.S6	AUGUSTUS	start_codon	5576780	5576782	.	+	0	transcript_id "Ledus.S6G016300.t1"; gene_id "Ledus.S6G016300"
Ledus.S6	AUGUSTUS	CDS	5576780	5577022	0.59	+	0	transcript_id "Ledus.S6G016300.t1"; gene_id "Ledus.S6G016300"
Ledus.S6	AUGUSTUS	exon	5576780	5577022	.	+	.	transcript_id "Ledus.S6G016300.t1"; gene_id "Ledus.S6G016300"
Ledus.S6	AUGUSTUS	stop_codon	5577023	5577025	.	+	0	transcript_id "Ledus.S6G016300.t1"; gene_id "Ledus.S6G016300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12245.t1 is derived from g5865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10624230	10627807	.	+	.	Ledus.S4G140100
Ledus.S4	AUGUSTUS	transcript	10624230	10627807	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	start_codon	10624230	10624232	.	+	0	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	CDS	10624230	10624482	0.47	+	0	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	exon	10624230	10624482	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	intron	10624483	10624573	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	CDS	10624574	10624679	0.78	+	2	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	exon	10624574	10624679	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	intron	10624680	10625222	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	CDS	10625223	10625301	1	+	1	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	exon	10625223	10625301	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	intron	10625302	10625432	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	CDS	10625433	10625531	1	+	0	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	exon	10625433	10625531	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	intron	10625532	10625626	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	CDS	10625627	10625740	1	+	0	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	exon	10625627	10625740	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	intron	10625741	10625840	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	CDS	10625841	10626007	1	+	0	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	exon	10625841	10626007	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	intron	10626008	10626127	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	CDS	10626128	10626209	0.66	+	1	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	exon	10626128	10626209	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	intron	10626210	10626316	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	CDS	10626317	10626402	1	+	0	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	exon	10626317	10626402	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	intron	10626403	10626507	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	CDS	10626508	10626705	0.99	+	1	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	exon	10626508	10626705	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	intron	10626706	10626825	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	CDS	10626826	10627807	0.97	+	1	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	exon	10626826	10627807	.	+	.	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
Ledus.S4	AUGUSTUS	stop_codon	10627808	10627810	.	+	0	transcript_id "Ledus.S4G140100.t1"; gene_id "Ledus.S4G140100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8383.t1 is derived from g13055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11407146	11410195	.	+	.	Ledus.S5G116100
Ledus.S5	AUGUSTUS	transcript	11407146	11410195	.	+	.	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	start_codon	11407146	11407148	.	+	0	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	CDS	11407146	11407905	0.97	+	0	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	exon	11407146	11407905	.	+	.	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	intron	11407906	11408184	.	+	.	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	CDS	11408185	11408357	1	+	2	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	exon	11408185	11408357	.	+	.	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	intron	11408358	11408703	.	+	.	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	CDS	11408704	11409202	0.99	+	0	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	exon	11408704	11409202	.	+	.	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	intron	11409203	11409290	.	+	.	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	CDS	11409291	11409553	1	+	2	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	exon	11409291	11409553	.	+	.	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	intron	11409554	11409712	.	+	.	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	CDS	11409713	11409784	1	+	0	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	exon	11409713	11409784	.	+	.	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	intron	11409785	11409928	.	+	.	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	CDS	11409929	11410195	0.98	+	0	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	exon	11409929	11410195	.	+	.	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
Ledus.S5	AUGUSTUS	stop_codon	11410196	11410198	.	+	0	transcript_id "Ledus.S5G116100.t1"; gene_id "Ledus.S5G116100"
# This transcript jg3397.t1 is derived from g832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8049784	8050160	.	+	.	Ledus.S1G081800
Ledus.S1	AUGUSTUS	transcript	8049784	8050160	.	+	.	transcript_id "Ledus.S1G081800.t1"; gene_id "Ledus.S1G081800"
Ledus.S1	AUGUSTUS	start_codon	8049784	8049786	.	+	0	transcript_id "Ledus.S1G081800.t1"; gene_id "Ledus.S1G081800"
Ledus.S1	AUGUSTUS	CDS	8049784	8050030	0.67	+	0	transcript_id "Ledus.S1G081800.t1"; gene_id "Ledus.S1G081800"
Ledus.S1	AUGUSTUS	exon	8049784	8050030	.	+	.	transcript_id "Ledus.S1G081800.t1"; gene_id "Ledus.S1G081800"
Ledus.S1	AUGUSTUS	intron	8050031	8050119	.	+	.	transcript_id "Ledus.S1G081800.t1"; gene_id "Ledus.S1G081800"
Ledus.S1	AUGUSTUS	CDS	8050120	8050160	0.67	+	2	transcript_id "Ledus.S1G081800.t1"; gene_id "Ledus.S1G081800"
Ledus.S1	AUGUSTUS	exon	8050120	8050160	.	+	.	transcript_id "Ledus.S1G081800.t1"; gene_id "Ledus.S1G081800"
Ledus.S1	AUGUSTUS	stop_codon	8050161	8050163	.	+	0	transcript_id "Ledus.S1G081800.t1"; gene_id "Ledus.S1G081800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2517.t1 is derived from g9380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18553307	18557352	.	-	.	Ledus.S2G239900
Ledus.S2	AUGUSTUS	transcript	18553307	18557352	.	-	.	transcript_id "Ledus.S2G239900.t1"; gene_id "Ledus.S2G239900"
Ledus.S2	AUGUSTUS	stop_codon	18553304	18553306	.	-	0	transcript_id "Ledus.S2G239900.t1"; gene_id "Ledus.S2G239900"
Ledus.S2	AUGUSTUS	CDS	18553307	18556444	1	-	0	transcript_id "Ledus.S2G239900.t1"; gene_id "Ledus.S2G239900"
Ledus.S2	AUGUSTUS	exon	18553307	18556444	.	-	.	transcript_id "Ledus.S2G239900.t1"; gene_id "Ledus.S2G239900"
Ledus.S2	AUGUSTUS	intron	18556445	18556572	.	-	.	transcript_id "Ledus.S2G239900.t1"; gene_id "Ledus.S2G239900"
Ledus.S2	AUGUSTUS	CDS	18556573	18557352	0.82	-	0	transcript_id "Ledus.S2G239900.t1"; gene_id "Ledus.S2G239900"
Ledus.S2	AUGUSTUS	exon	18556573	18557352	.	-	.	transcript_id "Ledus.S2G239900.t1"; gene_id "Ledus.S2G239900"
Ledus.S2	AUGUSTUS	start_codon	18557350	18557352	.	-	0	transcript_id "Ledus.S2G239900.t1"; gene_id "Ledus.S2G239900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8988.t1 is derived from g10018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3709204	3711148	.	+	.	Ledus.S3G046500
Ledus.S3	AUGUSTUS	transcript	3709204	3711148	.	+	.	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	start_codon	3709204	3709206	.	+	0	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	CDS	3709204	3709329	0.83	+	0	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	exon	3709204	3709329	.	+	.	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	intron	3709330	3709545	.	+	.	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	CDS	3709546	3709797	1	+	0	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	exon	3709546	3709797	.	+	.	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	intron	3709798	3709881	.	+	.	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	CDS	3709882	3710109	1	+	0	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	exon	3709882	3710109	.	+	.	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	intron	3710110	3710204	.	+	.	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	CDS	3710205	3710318	1	+	0	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	exon	3710205	3710318	.	+	.	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	intron	3710319	3710425	.	+	.	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	CDS	3710426	3711148	0.99	+	0	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	exon	3710426	3711148	.	+	.	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
Ledus.S3	AUGUSTUS	stop_codon	3711149	3711151	.	+	0	transcript_id "Ledus.S3G046500.t1"; gene_id "Ledus.S3G046500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4757.t1 is derived from g2195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19627131	19628304	.	-	.	Ledus.S1G217800
Ledus.S1	AUGUSTUS	transcript	19627131	19628304	.	-	.	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	stop_codon	19627128	19627130	.	-	0	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	CDS	19627131	19627398	0.94	-	1	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	exon	19627131	19627398	.	-	.	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	intron	19627399	19627480	.	-	.	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	CDS	19627481	19627990	1	-	1	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	exon	19627481	19627990	.	-	.	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	intron	19627991	19628137	.	-	.	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	CDS	19628138	19628194	1	-	1	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	exon	19628138	19628194	.	-	.	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	intron	19628195	19628281	.	-	.	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	CDS	19628282	19628304	1	-	0	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	exon	19628282	19628304	.	-	.	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
Ledus.S1	AUGUSTUS	start_codon	19628302	19628304	.	-	0	transcript_id "Ledus.S1G217800.t1"; gene_id "Ledus.S1G217800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1264.t1 is derived from g8125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8950644	8961084	.	+	.	Ledus.S2G114600
Ledus.S2	AUGUSTUS	transcript	8950644	8961084	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	start_codon	8950644	8950646	.	+	0	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8950644	8950692	0.97	+	0	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8950644	8950692	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8950693	8950864	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8950865	8950942	1	+	2	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8950865	8950942	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8950943	8951048	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8951049	8951208	0.97	+	2	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8951049	8951208	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8951209	8951364	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8951365	8951495	1	+	1	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8951365	8951495	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8951496	8951714	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8951715	8951883	0.97	+	2	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8951715	8951883	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8951884	8952002	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8952003	8952186	1	+	1	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8952003	8952186	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8952187	8952328	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8952329	8952438	1	+	0	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8952329	8952438	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8952439	8952650	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8952651	8952726	1	+	1	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8952651	8952726	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8952727	8952856	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8952857	8953063	1	+	0	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8952857	8953063	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8953064	8953233	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8953234	8953414	0.86	+	0	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8953234	8953414	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8953415	8953540	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8953541	8953669	0.88	+	2	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8953541	8953669	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8953670	8953918	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8953919	8954092	0.95	+	2	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8953919	8954092	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8954093	8954214	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8954215	8954448	0.93	+	2	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8954215	8954448	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8954449	8954672	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8954673	8956238	0.47	+	2	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8954673	8956238	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8956239	8956337	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8956338	8958973	0.94	+	2	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8956338	8958973	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8958974	8959123	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8959124	8959528	0.96	+	0	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8959124	8959528	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8959529	8959667	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8959668	8959826	1	+	0	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8959668	8959826	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8959827	8959967	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8959968	8960637	0.99	+	0	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8959968	8960637	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8960638	8960720	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8960721	8960865	1	+	2	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8960721	8960865	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	intron	8960866	8960951	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	CDS	8960952	8961084	0.97	+	1	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	exon	8960952	8961084	.	+	.	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
Ledus.S2	AUGUSTUS	stop_codon	8961085	8961087	.	+	0	transcript_id "Ledus.S2G114600.t1"; gene_id "Ledus.S2G114600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg830.t1 is derived from g7691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5436476	5441827	.	+	.	Ledus.S2G071200
Ledus.S2	AUGUSTUS	transcript	5436476	5441827	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	start_codon	5436476	5436478	.	+	0	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	CDS	5436476	5436566	0.47	+	0	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	exon	5436476	5436566	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	intron	5436567	5436683	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	CDS	5436684	5436839	0.49	+	2	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	exon	5436684	5436839	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	intron	5436840	5436921	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	CDS	5436922	5437213	0.74	+	2	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	exon	5436922	5437213	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	intron	5437214	5437548	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	CDS	5437549	5437666	1	+	1	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	exon	5437549	5437666	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	intron	5437667	5437916	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	CDS	5437917	5438013	1	+	0	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	exon	5437917	5438013	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	intron	5438014	5438163	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	CDS	5438164	5438270	0.96	+	2	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	exon	5438164	5438270	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	intron	5438271	5438388	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	CDS	5438389	5438511	0.87	+	0	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	exon	5438389	5438511	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	intron	5438512	5438615	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	CDS	5438616	5438769	0.99	+	0	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	exon	5438616	5438769	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	intron	5438770	5438936	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	CDS	5438937	5438997	1	+	2	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	exon	5438937	5438997	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	intron	5438998	5439179	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	CDS	5439180	5439547	0.97	+	1	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	exon	5439180	5439547	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	intron	5439548	5439695	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	CDS	5439696	5441406	0.99	+	2	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	exon	5439696	5441406	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	intron	5441407	5441562	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	CDS	5441563	5441827	1	+	1	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	exon	5441563	5441827	.	+	.	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
Ledus.S2	AUGUSTUS	stop_codon	5441828	5441830	.	+	0	transcript_id "Ledus.S2G071200.t1"; gene_id "Ledus.S2G071200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9467.t1 is derived from g10497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7168821	7171369	.	+	.	Ledus.S3G094400
Ledus.S3	AUGUSTUS	transcript	7168821	7171369	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	start_codon	7168821	7168823	.	+	0	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	CDS	7168821	7169198	0.89	+	0	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	exon	7168821	7169198	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	intron	7169199	7169292	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	CDS	7169293	7169392	0.95	+	0	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	exon	7169293	7169392	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	intron	7169393	7169473	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	CDS	7169474	7169536	0.74	+	2	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	exon	7169474	7169536	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	intron	7169537	7169677	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	CDS	7169678	7169700	0.73	+	2	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	exon	7169678	7169700	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	intron	7169701	7169781	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	CDS	7169782	7169964	0.92	+	0	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	exon	7169782	7169964	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	intron	7169965	7170131	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	CDS	7170132	7170308	0.98	+	0	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	exon	7170132	7170308	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	intron	7170309	7170597	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	CDS	7170598	7170693	1	+	0	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	exon	7170598	7170693	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	intron	7170694	7170809	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	CDS	7170810	7170950	0.96	+	0	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	exon	7170810	7170950	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	intron	7170951	7171034	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	CDS	7171035	7171150	0.84	+	0	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	exon	7171035	7171150	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	intron	7171151	7171263	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	CDS	7171264	7171369	0.86	+	1	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	exon	7171264	7171369	.	+	.	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
Ledus.S3	AUGUSTUS	stop_codon	7171370	7171372	.	+	0	transcript_id "Ledus.S3G094400.t1"; gene_id "Ledus.S3G094400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11897.t1 is derived from g5516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7577734	7583832	.	+	.	Ledus.S4G105300
Ledus.S4	AUGUSTUS	transcript	7577734	7583832	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	start_codon	7577734	7577736	.	+	0	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7577734	7577772	0.99	+	0	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7577734	7577772	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7577773	7578369	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7578370	7578556	1	+	0	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7578370	7578556	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7578557	7579428	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7579429	7579739	0.99	+	2	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7579429	7579739	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7579740	7579893	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7579894	7580007	1	+	0	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7579894	7580007	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7580008	7580106	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7580107	7581372	0.99	+	0	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7580107	7581372	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7581373	7581512	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7581513	7581766	0.98	+	0	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7581513	7581766	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7581767	7581928	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7581929	7582016	1	+	1	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7581929	7582016	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7582017	7582133	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7582134	7582269	1	+	0	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7582134	7582269	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7582270	7582370	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7582371	7582426	1	+	2	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7582371	7582426	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7582427	7582557	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7582558	7582614	1	+	0	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7582558	7582614	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7582615	7582726	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7582727	7582870	1	+	0	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7582727	7582870	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7582871	7582981	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7582982	7583044	1	+	0	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7582982	7583044	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7583045	7583145	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7583146	7583287	0.92	+	0	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7583146	7583287	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7583288	7583397	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7583398	7583532	1	+	2	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7583398	7583532	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	intron	7583533	7583638	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	CDS	7583639	7583832	0.95	+	2	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	exon	7583639	7583832	.	+	.	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
Ledus.S4	AUGUSTUS	stop_codon	7583833	7583835	.	+	0	transcript_id "Ledus.S4G105300.t1"; gene_id "Ledus.S4G105300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1201.t1 is derived from g8062.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8568637	8569621	.	-	.	Ledus.S2G108300
Ledus.S2	AUGUSTUS	transcript	8568637	8569621	.	-	.	transcript_id "Ledus.S2G108300.t1"; gene_id "Ledus.S2G108300"
Ledus.S2	AUGUSTUS	stop_codon	8568634	8568636	.	-	0	transcript_id "Ledus.S2G108300.t1"; gene_id "Ledus.S2G108300"
Ledus.S2	AUGUSTUS	CDS	8568637	8569299	1	-	0	transcript_id "Ledus.S2G108300.t1"; gene_id "Ledus.S2G108300"
Ledus.S2	AUGUSTUS	exon	8568637	8569299	.	-	.	transcript_id "Ledus.S2G108300.t1"; gene_id "Ledus.S2G108300"
Ledus.S2	AUGUSTUS	intron	8569300	8569591	.	-	.	transcript_id "Ledus.S2G108300.t1"; gene_id "Ledus.S2G108300"
Ledus.S2	AUGUSTUS	CDS	8569592	8569621	0.9	-	0	transcript_id "Ledus.S2G108300.t1"; gene_id "Ledus.S2G108300"
Ledus.S2	AUGUSTUS	exon	8569592	8569621	.	-	.	transcript_id "Ledus.S2G108300.t1"; gene_id "Ledus.S2G108300"
Ledus.S2	AUGUSTUS	start_codon	8569619	8569621	.	-	0	transcript_id "Ledus.S2G108300.t1"; gene_id "Ledus.S2G108300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10169.t1 is derived from g11199.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13435787	13437240	.	+	.	Ledus.S3G164600
Ledus.S3	AUGUSTUS	transcript	13435787	13437240	.	+	.	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	start_codon	13435787	13435789	.	+	0	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	CDS	13435787	13435855	0.91	+	0	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	exon	13435787	13435855	.	+	.	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	intron	13435856	13435930	.	+	.	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	CDS	13435931	13435989	0.96	+	0	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	exon	13435931	13435989	.	+	.	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	intron	13435990	13436053	.	+	.	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	CDS	13436054	13436947	0.77	+	1	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	exon	13436054	13436947	.	+	.	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	intron	13436948	13437026	.	+	.	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	CDS	13437027	13437240	0.96	+	1	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	exon	13437027	13437240	.	+	.	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
Ledus.S3	AUGUSTUS	stop_codon	13437241	13437243	.	+	0	transcript_id "Ledus.S3G164600.t1"; gene_id "Ledus.S3G164600"
# This transcript jg6772.t2 is derived from g4216.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6773.t1 is derived from g4217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34031940	34033388	.	+	.	Ledus.S1G419400
Ledus.S1	AUGUSTUS	transcript	34031940	34033388	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	start_codon	34031940	34031942	.	+	0	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	CDS	34031940	34032029	1	+	0	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	exon	34031940	34032029	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	intron	34032030	34032120	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	CDS	34032121	34032216	1	+	0	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	exon	34032121	34032216	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	intron	34032217	34032310	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	CDS	34032311	34032415	1	+	0	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	exon	34032311	34032415	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	intron	34032416	34032478	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	CDS	34032479	34032645	1	+	0	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	exon	34032479	34032645	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	intron	34032646	34032731	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	CDS	34032732	34032813	1	+	1	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	exon	34032732	34032813	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	intron	34032814	34032881	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	CDS	34032882	34032950	1	+	0	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	exon	34032882	34032950	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	intron	34032951	34033034	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	CDS	34033035	34033116	1	+	0	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	exon	34033035	34033116	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	intron	34033117	34033199	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	CDS	34033200	34033222	1	+	2	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	exon	34033200	34033222	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	intron	34033223	34033370	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	CDS	34033371	34033388	1	+	0	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	exon	34033371	34033388	.	+	.	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
Ledus.S1	AUGUSTUS	stop_codon	34033389	34033391	.	+	0	transcript_id "Ledus.S1G419400.t1"; gene_id "Ledus.S1G419400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12286.t1 is derived from g5906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10894440	10894988	.	-	.	Ledus.S4G144200
Ledus.S4	AUGUSTUS	transcript	10894440	10894988	.	-	.	transcript_id "Ledus.S4G144200.t1"; gene_id "Ledus.S4G144200"
Ledus.S4	AUGUSTUS	stop_codon	10894437	10894439	.	-	0	transcript_id "Ledus.S4G144200.t1"; gene_id "Ledus.S4G144200"
Ledus.S4	AUGUSTUS	CDS	10894440	10894988	0.49	-	0	transcript_id "Ledus.S4G144200.t1"; gene_id "Ledus.S4G144200"
Ledus.S4	AUGUSTUS	exon	10894440	10894988	.	-	.	transcript_id "Ledus.S4G144200.t1"; gene_id "Ledus.S4G144200"
Ledus.S4	AUGUSTUS	start_codon	10894986	10894988	.	-	0	transcript_id "Ledus.S4G144200.t1"; gene_id "Ledus.S4G144200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5308.t1 is derived from g2747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23246223	23249104	.	-	.	Ledus.S1G272900
Ledus.S1	AUGUSTUS	transcript	23246223	23249104	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	stop_codon	23246220	23246222	.	-	0	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23246223	23246315	1	-	0	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23246223	23246315	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23246316	23246414	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23246415	23246518	1	-	2	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23246415	23246518	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23246519	23246606	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23246607	23246679	1	-	0	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23246607	23246679	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23246680	23246771	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23246772	23246819	1	-	0	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23246772	23246819	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23246820	23246893	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23246894	23246975	1	-	1	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23246894	23246975	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23246976	23247048	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23247049	23247176	1	-	0	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23247049	23247176	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23247177	23247250	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23247251	23247331	1	-	0	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23247251	23247331	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23247332	23247426	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23247427	23247508	1	-	1	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23247427	23247508	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23247509	23247600	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23247601	23247674	1	-	0	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23247601	23247674	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23247675	23247764	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23247765	23247854	1	-	0	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23247765	23247854	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23247855	23247949	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23247950	23248034	1	-	1	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23247950	23248034	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23248035	23248122	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23248123	23248463	0.74	-	0	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23248123	23248463	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23248464	23248574	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23248575	23248948	0.72	-	2	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23248575	23248948	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	intron	23248949	23249028	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	CDS	23249029	23249104	1	-	0	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	exon	23249029	23249104	.	-	.	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
Ledus.S1	AUGUSTUS	start_codon	23249102	23249104	.	-	0	transcript_id "Ledus.S1G272900.t1"; gene_id "Ledus.S1G272900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3162.t1 is derived from g597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6457480	6459593	.	-	.	Ledus.S1G058300
Ledus.S1	AUGUSTUS	transcript	6457480	6459593	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	stop_codon	6457477	6457479	.	-	0	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	CDS	6457480	6457551	0.95	-	0	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	exon	6457480	6457551	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	intron	6457552	6457631	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	CDS	6457632	6457676	1	-	0	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	exon	6457632	6457676	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	intron	6457677	6457765	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	CDS	6457766	6457880	1	-	1	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	exon	6457766	6457880	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	intron	6457881	6457968	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	CDS	6457969	6458075	1	-	0	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	exon	6457969	6458075	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	intron	6458076	6458152	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	CDS	6458153	6458247	0.97	-	2	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	exon	6458153	6458247	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	intron	6458248	6458348	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	CDS	6458349	6458463	1	-	0	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	exon	6458349	6458463	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	intron	6458464	6458584	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	CDS	6458585	6458636	1	-	1	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	exon	6458585	6458636	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	intron	6458637	6458711	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	CDS	6458712	6458773	0.98	-	0	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	exon	6458712	6458773	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	intron	6458774	6458891	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	CDS	6458892	6459593	0.98	-	0	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	exon	6458892	6459593	.	-	.	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
Ledus.S1	AUGUSTUS	start_codon	6459591	6459593	.	-	0	transcript_id "Ledus.S1G058300.t1"; gene_id "Ledus.S1G058300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11548.t1 is derived from g5166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5223250	5226291	.	+	.	Ledus.S4G070400
Ledus.S4	AUGUSTUS	transcript	5223250	5226291	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	start_codon	5223250	5223252	.	+	0	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	CDS	5223250	5223468	0.51	+	0	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	exon	5223250	5223468	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	intron	5223469	5223612	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	CDS	5223613	5223707	1	+	0	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	exon	5223613	5223707	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	intron	5223708	5223822	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	CDS	5223823	5223898	1	+	1	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	exon	5223823	5223898	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	intron	5223899	5224028	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	CDS	5224029	5224151	1	+	0	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	exon	5224029	5224151	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	intron	5224152	5224298	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	CDS	5224299	5224391	1	+	0	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	exon	5224299	5224391	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	intron	5224392	5224501	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	CDS	5224502	5224634	1	+	0	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	exon	5224502	5224634	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	intron	5224635	5224724	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	CDS	5224725	5224806	1	+	2	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	exon	5224725	5224806	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	intron	5224807	5224934	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	CDS	5224935	5225067	1	+	1	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	exon	5224935	5225067	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	intron	5225068	5225166	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	CDS	5225167	5225498	1	+	0	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	exon	5225167	5225498	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	intron	5225499	5225592	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	CDS	5225593	5225902	1	+	1	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	exon	5225593	5225902	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	intron	5225903	5225985	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	CDS	5225986	5226291	1	+	0	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	exon	5225986	5226291	.	+	.	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
Ledus.S4	AUGUSTUS	stop_codon	5226292	5226294	.	+	0	transcript_id "Ledus.S4G070400.t1"; gene_id "Ledus.S4G070400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2614.t1 is derived from g47.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	508113	508583	.	+	.	Ledus.S1G003500
Ledus.S1	AUGUSTUS	transcript	508113	508583	.	+	.	transcript_id "Ledus.S1G003500.t1"; gene_id "Ledus.S1G003500"
Ledus.S1	AUGUSTUS	start_codon	508113	508115	.	+	0	transcript_id "Ledus.S1G003500.t1"; gene_id "Ledus.S1G003500"
Ledus.S1	AUGUSTUS	CDS	508113	508583	0.84	+	0	transcript_id "Ledus.S1G003500.t1"; gene_id "Ledus.S1G003500"
Ledus.S1	AUGUSTUS	exon	508113	508583	.	+	.	transcript_id "Ledus.S1G003500.t1"; gene_id "Ledus.S1G003500"
Ledus.S1	AUGUSTUS	stop_codon	508584	508586	.	+	0	transcript_id "Ledus.S1G003500.t1"; gene_id "Ledus.S1G003500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3672.t1 is derived from g1108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10599698	10601722	.	-	.	Ledus.S1G109300
Ledus.S1	AUGUSTUS	transcript	10599698	10601722	.	-	.	transcript_id "Ledus.S1G109300.t1"; gene_id "Ledus.S1G109300"
Ledus.S1	AUGUSTUS	stop_codon	10599695	10599697	.	-	0	transcript_id "Ledus.S1G109300.t1"; gene_id "Ledus.S1G109300"
Ledus.S1	AUGUSTUS	CDS	10599698	10601722	0.95	-	0	transcript_id "Ledus.S1G109300.t1"; gene_id "Ledus.S1G109300"
Ledus.S1	AUGUSTUS	exon	10599698	10601722	.	-	.	transcript_id "Ledus.S1G109300.t1"; gene_id "Ledus.S1G109300"
Ledus.S1	AUGUSTUS	start_codon	10601720	10601722	.	-	0	transcript_id "Ledus.S1G109300.t1"; gene_id "Ledus.S1G109300"
Ledus.S1	AUGUSTUS	transcript	10599698	10600765	.	-	.	transcript_id "Ledus.S1G109300.t2"; gene_id "Ledus.S1G109300"
Ledus.S1	AUGUSTUS	stop_codon	10599695	10599697	.	-	0	transcript_id "Ledus.S1G109300.t2"; gene_id "Ledus.S1G109300"
Ledus.S1	AUGUSTUS	CDS	10599698	10600765	0.75	-	0	transcript_id "Ledus.S1G109300.t2"; gene_id "Ledus.S1G109300"
Ledus.S1	AUGUSTUS	exon	10599698	10600765	.	-	.	transcript_id "Ledus.S1G109300.t2"; gene_id "Ledus.S1G109300"
Ledus.S1	AUGUSTUS	start_codon	10600763	10600765	.	-	0	transcript_id "Ledus.S1G109300.t2"; gene_id "Ledus.S1G109300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8356.t1 is derived from g13028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11014265	11017872	.	-	.	Ledus.S5G113400
Ledus.S5	AUGUSTUS	transcript	11014265	11017872	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	stop_codon	11014262	11014264	.	-	0	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	CDS	11014265	11014283	0.94	-	1	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	exon	11014265	11014283	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	intron	11014284	11014615	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	CDS	11014616	11014649	0.92	-	2	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	exon	11014616	11014649	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	intron	11014650	11014815	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	CDS	11014816	11014855	0.32	-	0	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	exon	11014816	11014855	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	intron	11014856	11015018	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	CDS	11015019	11015102	0.36	-	0	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	exon	11015019	11015102	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	intron	11015103	11015194	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	CDS	11015195	11015257	0.82	-	0	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	exon	11015195	11015257	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	intron	11015258	11015688	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	CDS	11015689	11015763	0.62	-	0	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	exon	11015689	11015763	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	intron	11015764	11016057	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	CDS	11016058	11017872	0.26	-	0	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	exon	11016058	11017872	.	-	.	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
Ledus.S5	AUGUSTUS	start_codon	11017870	11017872	.	-	0	transcript_id "Ledus.S5G113400.t1"; gene_id "Ledus.S5G113400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4967.t1 is derived from g2405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20912170	20912857	.	+	.	Ledus.S1G238800
Ledus.S1	AUGUSTUS	transcript	20912170	20912857	.	+	.	transcript_id "Ledus.S1G238800.t1"; gene_id "Ledus.S1G238800"
Ledus.S1	AUGUSTUS	start_codon	20912170	20912172	.	+	0	transcript_id "Ledus.S1G238800.t1"; gene_id "Ledus.S1G238800"
Ledus.S1	AUGUSTUS	CDS	20912170	20912188	0.67	+	0	transcript_id "Ledus.S1G238800.t1"; gene_id "Ledus.S1G238800"
Ledus.S1	AUGUSTUS	exon	20912170	20912188	.	+	.	transcript_id "Ledus.S1G238800.t1"; gene_id "Ledus.S1G238800"
Ledus.S1	AUGUSTUS	intron	20912189	20912582	.	+	.	transcript_id "Ledus.S1G238800.t1"; gene_id "Ledus.S1G238800"
Ledus.S1	AUGUSTUS	CDS	20912583	20912857	1	+	2	transcript_id "Ledus.S1G238800.t1"; gene_id "Ledus.S1G238800"
Ledus.S1	AUGUSTUS	exon	20912583	20912857	.	+	.	transcript_id "Ledus.S1G238800.t1"; gene_id "Ledus.S1G238800"
Ledus.S1	AUGUSTUS	stop_codon	20912858	20912860	.	+	0	transcript_id "Ledus.S1G238800.t1"; gene_id "Ledus.S1G238800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8902.t1 is derived from g9932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2964112	2966425	.	-	.	Ledus.S3G037900
Ledus.S3	AUGUSTUS	transcript	2964112	2966425	.	-	.	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	stop_codon	2964109	2964111	.	-	0	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	CDS	2964112	2964339	1	-	0	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	exon	2964112	2964339	.	-	.	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	intron	2964340	2964482	.	-	.	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	CDS	2964483	2964689	1	-	0	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	exon	2964483	2964689	.	-	.	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	intron	2964690	2964809	.	-	.	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	CDS	2964810	2965596	1	-	1	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	exon	2964810	2965596	.	-	.	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	intron	2965597	2965707	.	-	.	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	CDS	2965708	2966040	1	-	1	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	exon	2965708	2966040	.	-	.	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	intron	2966041	2966124	.	-	.	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	CDS	2966125	2966213	0.51	-	0	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	exon	2966125	2966213	.	-	.	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	intron	2966214	2966398	.	-	.	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	CDS	2966399	2966425	0.64	-	0	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	exon	2966399	2966425	.	-	.	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
Ledus.S3	AUGUSTUS	start_codon	2966423	2966425	.	-	0	transcript_id "Ledus.S3G037900.t1"; gene_id "Ledus.S3G037900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7702.t1 is derived from g12373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5286445	5291732	.	-	.	Ledus.S5G048000
Ledus.S5	AUGUSTUS	transcript	5286445	5291732	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	stop_codon	5286442	5286444	.	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5286445	5286706	0.98	-	1	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5286445	5286706	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5286707	5286794	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5286795	5286841	1	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5286795	5286841	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5286842	5287017	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5287018	5287115	1	-	2	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5287018	5287115	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5287116	5287262	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5287263	5287308	1	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5287263	5287308	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5287309	5287399	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5287400	5287462	1	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5287400	5287462	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5287463	5287549	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5287550	5287643	1	-	1	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5287550	5287643	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5287644	5287740	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5287741	5287843	1	-	2	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5287741	5287843	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5287844	5288038	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5288039	5288111	1	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5288039	5288111	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5288112	5288217	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5288218	5288457	0.99	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5288218	5288457	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5288458	5288553	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5288554	5288853	1	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5288554	5288853	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5288854	5289013	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5289014	5289079	0.99	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5289014	5289079	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5289080	5289204	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5289205	5289354	0.96	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5289205	5289354	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5289355	5289452	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5289453	5289623	1	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5289453	5289623	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5289624	5289751	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5289752	5289802	1	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5289752	5289802	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5289803	5289962	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5289963	5290115	1	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5289963	5290115	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5290116	5290198	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5290199	5290270	1	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5290199	5290270	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5290271	5290487	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5290488	5290643	1	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5290488	5290643	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5290644	5290809	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5290810	5291037	1	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5290810	5291037	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5291038	5291134	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5291135	5291235	1	-	2	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5291135	5291235	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	intron	5291236	5291356	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	CDS	5291357	5291732	0.55	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	exon	5291357	5291732	.	-	.	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
Ledus.S5	AUGUSTUS	start_codon	5291730	5291732	.	-	0	transcript_id "Ledus.S5G048000.t1"; gene_id "Ledus.S5G048000"
# This transcript jg7953.t1 is derived from g12624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8101907	8102644	.	+	.	Ledus.S5G073100
Ledus.S5	AUGUSTUS	transcript	8101907	8102644	.	+	.	transcript_id "Ledus.S5G073100.t1"; gene_id "Ledus.S5G073100"
Ledus.S5	AUGUSTUS	start_codon	8101907	8101909	.	+	0	transcript_id "Ledus.S5G073100.t1"; gene_id "Ledus.S5G073100"
Ledus.S5	AUGUSTUS	CDS	8101907	8102644	1	+	0	transcript_id "Ledus.S5G073100.t1"; gene_id "Ledus.S5G073100"
Ledus.S5	AUGUSTUS	exon	8101907	8102644	.	+	.	transcript_id "Ledus.S5G073100.t1"; gene_id "Ledus.S5G073100"
Ledus.S5	AUGUSTUS	stop_codon	8102645	8102647	.	+	0	transcript_id "Ledus.S5G073100.t1"; gene_id "Ledus.S5G073100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9097.t1 is derived from g10127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4566280	4567152	.	-	.	Ledus.S3G057400
Ledus.S3	AUGUSTUS	transcript	4566280	4567152	.	-	.	transcript_id "Ledus.S3G057400.t1"; gene_id "Ledus.S3G057400"
Ledus.S3	AUGUSTUS	stop_codon	4566277	4566279	.	-	0	transcript_id "Ledus.S3G057400.t1"; gene_id "Ledus.S3G057400"
Ledus.S3	AUGUSTUS	CDS	4566280	4566355	0.99	-	1	transcript_id "Ledus.S3G057400.t1"; gene_id "Ledus.S3G057400"
Ledus.S3	AUGUSTUS	exon	4566280	4566355	.	-	.	transcript_id "Ledus.S3G057400.t1"; gene_id "Ledus.S3G057400"
Ledus.S3	AUGUSTUS	intron	4566356	4566446	.	-	.	transcript_id "Ledus.S3G057400.t1"; gene_id "Ledus.S3G057400"
Ledus.S3	AUGUSTUS	CDS	4566447	4566533	0.93	-	1	transcript_id "Ledus.S3G057400.t1"; gene_id "Ledus.S3G057400"
Ledus.S3	AUGUSTUS	exon	4566447	4566533	.	-	.	transcript_id "Ledus.S3G057400.t1"; gene_id "Ledus.S3G057400"
Ledus.S3	AUGUSTUS	intron	4566534	4567108	.	-	.	transcript_id "Ledus.S3G057400.t1"; gene_id "Ledus.S3G057400"
Ledus.S3	AUGUSTUS	CDS	4567109	4567152	0.01	-	0	transcript_id "Ledus.S3G057400.t1"; gene_id "Ledus.S3G057400"
Ledus.S3	AUGUSTUS	exon	4567109	4567152	.	-	.	transcript_id "Ledus.S3G057400.t1"; gene_id "Ledus.S3G057400"
Ledus.S3	AUGUSTUS	start_codon	4567150	4567152	.	-	0	transcript_id "Ledus.S3G057400.t1"; gene_id "Ledus.S3G057400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3487.t1 is derived from g922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8691074	8691661	.	+	.	Ledus.S1G090800
Ledus.S1	AUGUSTUS	transcript	8691074	8691661	.	+	.	transcript_id "Ledus.S1G090800.t1"; gene_id "Ledus.S1G090800"
Ledus.S1	AUGUSTUS	start_codon	8691074	8691076	.	+	0	transcript_id "Ledus.S1G090800.t1"; gene_id "Ledus.S1G090800"
Ledus.S1	AUGUSTUS	CDS	8691074	8691661	1	+	0	transcript_id "Ledus.S1G090800.t1"; gene_id "Ledus.S1G090800"
Ledus.S1	AUGUSTUS	exon	8691074	8691661	.	+	.	transcript_id "Ledus.S1G090800.t1"; gene_id "Ledus.S1G090800"
Ledus.S1	AUGUSTUS	stop_codon	8691662	8691664	.	+	0	transcript_id "Ledus.S1G090800.t1"; gene_id "Ledus.S1G090800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3606.t1 is derived from g1042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10181939	10183978	.	+	.	Ledus.S1G102700
Ledus.S1	AUGUSTUS	transcript	10181939	10183978	.	+	.	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	start_codon	10181939	10181941	.	+	0	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	CDS	10181939	10181957	0.56	+	0	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	exon	10181939	10181957	.	+	.	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	intron	10181958	10182056	.	+	.	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	CDS	10182057	10182104	0.4	+	2	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	exon	10182057	10182104	.	+	.	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	intron	10182105	10182657	.	+	.	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	CDS	10182658	10183342	0.52	+	2	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	exon	10182658	10183342	.	+	.	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	intron	10183343	10183437	.	+	.	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	CDS	10183438	10183978	0.38	+	1	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	exon	10183438	10183978	.	+	.	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
Ledus.S1	AUGUSTUS	stop_codon	10183979	10183981	.	+	0	transcript_id "Ledus.S1G102700.t1"; gene_id "Ledus.S1G102700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3054.t1 is derived from g489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5558516	5559238	.	-	.	Ledus.S1G047500
Ledus.S1	AUGUSTUS	transcript	5558516	5559238	.	-	.	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	stop_codon	5558513	5558515	.	-	0	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	CDS	5558516	5558572	1	-	0	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	exon	5558516	5558572	.	-	.	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	intron	5558573	5558654	.	-	.	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	CDS	5558655	5558729	0.96	-	0	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	exon	5558655	5558729	.	-	.	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	intron	5558730	5558837	.	-	.	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	CDS	5558838	5558905	0.96	-	2	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	exon	5558838	5558905	.	-	.	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	intron	5558906	5559123	.	-	.	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	CDS	5559124	5559238	0.99	-	0	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	exon	5559124	5559238	.	-	.	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
Ledus.S1	AUGUSTUS	start_codon	5559236	5559238	.	-	0	transcript_id "Ledus.S1G047500.t1"; gene_id "Ledus.S1G047500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11402.t1 is derived from g5020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4014940	4017479	.	-	.	Ledus.S4G055800
Ledus.S4	AUGUSTUS	transcript	4014940	4017479	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	stop_codon	4014937	4014939	.	-	0	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4014940	4015387	1	-	1	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4014940	4015387	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4015388	4015478	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4015479	4015810	1	-	0	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4015479	4015810	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4015811	4015919	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4015920	4016022	1	-	1	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4015920	4016022	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4016023	4016101	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4016102	4016283	1	-	0	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4016102	4016283	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4016284	4016359	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4016360	4016531	1	-	1	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4016360	4016531	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4016532	4016611	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4016612	4016700	1	-	0	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4016612	4016700	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4016701	4016784	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4016785	4016861	1	-	2	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4016785	4016861	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4016862	4016951	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4016952	4017045	0.97	-	0	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4016952	4017045	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4017046	4017147	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4017148	4017201	0.97	-	0	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4017148	4017201	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4017202	4017272	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4017273	4017479	0.79	-	0	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4017273	4017479	.	-	.	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	start_codon	4017477	4017479	.	-	0	transcript_id "Ledus.S4G055800.t1"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	transcript	4014940	4017479	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	stop_codon	4014937	4014939	.	-	0	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4014940	4015387	0.99	-	1	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4014940	4015387	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4015388	4015478	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4015479	4015810	1	-	0	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4015479	4015810	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4015811	4015919	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4015920	4016022	1	-	1	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4015920	4016022	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4016023	4016101	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4016102	4016283	1	-	0	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4016102	4016283	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4016284	4016359	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4016360	4016531	1	-	1	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4016360	4016531	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4016532	4016611	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4016612	4016700	1	-	0	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4016612	4016700	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4016701	4016769	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4016770	4016861	1	-	2	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4016770	4016861	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4016862	4016951	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4016952	4017045	0.98	-	0	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4016952	4017045	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4017046	4017147	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4017148	4017201	0.99	-	0	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4017148	4017201	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	intron	4017202	4017272	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	CDS	4017273	4017479	0.72	-	0	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	exon	4017273	4017479	.	-	.	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
Ledus.S4	AUGUSTUS	start_codon	4017477	4017479	.	-	0	transcript_id "Ledus.S4G055800.t2"; gene_id "Ledus.S4G055800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2568.t1 is derived from g9431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19014398	19015141	.	+	.	Ledus.S2G245000
Ledus.S2	AUGUSTUS	transcript	19014398	19015141	.	+	.	transcript_id "Ledus.S2G245000.t1"; gene_id "Ledus.S2G245000"
Ledus.S2	AUGUSTUS	start_codon	19014398	19014400	.	+	0	transcript_id "Ledus.S2G245000.t1"; gene_id "Ledus.S2G245000"
Ledus.S2	AUGUSTUS	CDS	19014398	19015141	1	+	0	transcript_id "Ledus.S2G245000.t1"; gene_id "Ledus.S2G245000"
Ledus.S2	AUGUSTUS	exon	19014398	19015141	.	+	.	transcript_id "Ledus.S2G245000.t1"; gene_id "Ledus.S2G245000"
Ledus.S2	AUGUSTUS	stop_codon	19015142	19015144	.	+	0	transcript_id "Ledus.S2G245000.t1"; gene_id "Ledus.S2G245000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1079.t1 is derived from g7940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7308060	7311074	.	+	.	Ledus.S2G096100
Ledus.S2	AUGUSTUS	transcript	7308060	7311074	.	+	.	transcript_id "Ledus.S2G096100.t1"; gene_id "Ledus.S2G096100"
Ledus.S2	AUGUSTUS	start_codon	7308060	7308062	.	+	0	transcript_id "Ledus.S2G096100.t1"; gene_id "Ledus.S2G096100"
Ledus.S2	AUGUSTUS	CDS	7308060	7311074	0.47	+	0	transcript_id "Ledus.S2G096100.t1"; gene_id "Ledus.S2G096100"
Ledus.S2	AUGUSTUS	exon	7308060	7311074	.	+	.	transcript_id "Ledus.S2G096100.t1"; gene_id "Ledus.S2G096100"
Ledus.S2	AUGUSTUS	stop_codon	7311075	7311077	.	+	0	transcript_id "Ledus.S2G096100.t1"; gene_id "Ledus.S2G096100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4801.t1 is derived from g2239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19836770	19837768	.	-	.	Ledus.S1G222200
Ledus.S1	AUGUSTUS	transcript	19836770	19837768	.	-	.	transcript_id "Ledus.S1G222200.t1"; gene_id "Ledus.S1G222200"
Ledus.S1	AUGUSTUS	stop_codon	19836767	19836769	.	-	0	transcript_id "Ledus.S1G222200.t1"; gene_id "Ledus.S1G222200"
Ledus.S1	AUGUSTUS	CDS	19836770	19837768	0.54	-	0	transcript_id "Ledus.S1G222200.t1"; gene_id "Ledus.S1G222200"
Ledus.S1	AUGUSTUS	exon	19836770	19837768	.	-	.	transcript_id "Ledus.S1G222200.t1"; gene_id "Ledus.S1G222200"
Ledus.S1	AUGUSTUS	start_codon	19837766	19837768	.	-	0	transcript_id "Ledus.S1G222200.t1"; gene_id "Ledus.S1G222200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5737.t1 is derived from g3176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26416440	26417013	.	+	.	Ledus.S1G315800
Ledus.S1	AUGUSTUS	transcript	26416440	26417013	.	+	.	transcript_id "Ledus.S1G315800.t1"; gene_id "Ledus.S1G315800"
Ledus.S1	AUGUSTUS	start_codon	26416440	26416442	.	+	0	transcript_id "Ledus.S1G315800.t1"; gene_id "Ledus.S1G315800"
Ledus.S1	AUGUSTUS	CDS	26416440	26416653	0.63	+	0	transcript_id "Ledus.S1G315800.t1"; gene_id "Ledus.S1G315800"
Ledus.S1	AUGUSTUS	exon	26416440	26416653	.	+	.	transcript_id "Ledus.S1G315800.t1"; gene_id "Ledus.S1G315800"
Ledus.S1	AUGUSTUS	intron	26416654	26416750	.	+	.	transcript_id "Ledus.S1G315800.t1"; gene_id "Ledus.S1G315800"
Ledus.S1	AUGUSTUS	CDS	26416751	26417013	0.51	+	2	transcript_id "Ledus.S1G315800.t1"; gene_id "Ledus.S1G315800"
Ledus.S1	AUGUSTUS	exon	26416751	26417013	.	+	.	transcript_id "Ledus.S1G315800.t1"; gene_id "Ledus.S1G315800"
Ledus.S1	AUGUSTUS	stop_codon	26417014	26417016	.	+	0	transcript_id "Ledus.S1G315800.t1"; gene_id "Ledus.S1G315800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11118.t1 is derived from g4736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1930383	1930580	.	+	.	Ledus.S4G027400
Ledus.S4	AUGUSTUS	transcript	1930383	1930580	.	+	.	transcript_id "Ledus.S4G027400.t1"; gene_id "Ledus.S4G027400"
Ledus.S4	AUGUSTUS	start_codon	1930383	1930385	.	+	0	transcript_id "Ledus.S4G027400.t1"; gene_id "Ledus.S4G027400"
Ledus.S4	AUGUSTUS	CDS	1930383	1930580	0.68	+	0	transcript_id "Ledus.S4G027400.t1"; gene_id "Ledus.S4G027400"
Ledus.S4	AUGUSTUS	exon	1930383	1930580	.	+	.	transcript_id "Ledus.S4G027400.t1"; gene_id "Ledus.S4G027400"
Ledus.S4	AUGUSTUS	stop_codon	1930581	1930583	.	+	0	transcript_id "Ledus.S4G027400.t1"; gene_id "Ledus.S4G027400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6906.t1 is derived from g4350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35118048	35119507	.	+	.	Ledus.S1G432700
Ledus.S1	AUGUSTUS	transcript	35118048	35119507	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	start_codon	35118048	35118050	.	+	0	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	CDS	35118048	35118127	1	+	0	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	exon	35118048	35118127	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	intron	35118128	35118326	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	CDS	35118327	35118407	1	+	1	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	exon	35118327	35118407	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	intron	35118408	35118555	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	CDS	35118556	35118636	1	+	1	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	exon	35118556	35118636	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	intron	35118637	35118769	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	CDS	35118770	35118836	0.72	+	1	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	exon	35118770	35118836	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	intron	35118837	35118946	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	CDS	35118947	35119063	0.72	+	0	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	exon	35118947	35119063	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	intron	35119064	35119156	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	CDS	35119157	35119323	1	+	0	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	exon	35119157	35119323	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	intron	35119324	35119446	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	CDS	35119447	35119507	0.82	+	1	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	exon	35119447	35119507	.	+	.	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
Ledus.S1	AUGUSTUS	stop_codon	35119508	35119510	.	+	0	transcript_id "Ledus.S1G432700.t1"; gene_id "Ledus.S1G432700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9676.t1 is derived from g10706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8977936	8982048	.	+	.	Ledus.S3G115300
Ledus.S3	AUGUSTUS	transcript	8977936	8982048	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	start_codon	8977936	8977938	.	+	0	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8977936	8978481	0.6	+	0	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8977936	8978481	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8978482	8978681	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8978682	8978750	1	+	0	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8978682	8978750	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8978751	8978837	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8978838	8978945	1	+	0	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8978838	8978945	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8978946	8979127	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8979128	8979193	1	+	0	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8979128	8979193	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8979194	8979514	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8979515	8979676	1	+	0	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8979515	8979676	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8979677	8979835	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8979836	8979922	1	+	0	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8979836	8979922	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8979923	8980017	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8980018	8980124	1	+	0	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8980018	8980124	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8980125	8980278	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8980279	8980377	1	+	1	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8980279	8980377	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8980378	8980490	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8980491	8980542	1	+	1	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8980491	8980542	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8980543	8980624	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8980625	8981334	1	+	0	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8980625	8981334	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8981335	8981426	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8981427	8981639	1	+	1	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8981427	8981639	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8981640	8981733	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8981734	8981857	0.87	+	1	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8981734	8981857	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8981858	8981979	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8981980	8982048	0.34	+	0	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8981980	8982048	.	+	.	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	stop_codon	8982049	8982051	.	+	0	transcript_id "Ledus.S3G115300.t1"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	transcript	8977936	8982048	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	start_codon	8977936	8977938	.	+	0	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8977936	8978481	0.65	+	0	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8977936	8978481	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8978482	8978681	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8978682	8978750	1	+	0	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8978682	8978750	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8978751	8978837	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8978838	8978945	1	+	0	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8978838	8978945	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8978946	8979127	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8979128	8979193	0.99	+	0	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8979128	8979193	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8979194	8979399	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8979400	8979421	0.62	+	0	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8979400	8979421	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8979422	8979514	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8979515	8979520	0.62	+	2	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8979515	8979520	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8979521	8979587	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8979588	8979676	0.58	+	2	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8979588	8979676	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8979677	8979835	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8979836	8979922	1	+	0	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8979836	8979922	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8979923	8980017	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8980018	8980124	1	+	0	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8980018	8980124	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8980125	8980278	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8980279	8980377	0.98	+	1	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8980279	8980377	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8980378	8980490	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8980491	8980542	1	+	1	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8980491	8980542	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8980543	8980624	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8980625	8981334	1	+	0	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8980625	8981334	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8981335	8981426	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8981427	8981639	1	+	1	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8981427	8981639	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8981640	8981733	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8981734	8981857	0.92	+	1	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8981734	8981857	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	intron	8981858	8981979	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	CDS	8981980	8982048	0.5	+	0	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	exon	8981980	8982048	.	+	.	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
Ledus.S3	AUGUSTUS	stop_codon	8982049	8982051	.	+	0	transcript_id "Ledus.S3G115300.t2"; gene_id "Ledus.S3G115300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1539.t1 is derived from g8400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10849401	10849700	.	+	.	Ledus.S2G142100
Ledus.S2	AUGUSTUS	transcript	10849401	10849700	.	+	.	transcript_id "Ledus.S2G142100.t1"; gene_id "Ledus.S2G142100"
Ledus.S2	AUGUSTUS	start_codon	10849401	10849403	.	+	0	transcript_id "Ledus.S2G142100.t1"; gene_id "Ledus.S2G142100"
Ledus.S2	AUGUSTUS	CDS	10849401	10849700	0.78	+	0	transcript_id "Ledus.S2G142100.t1"; gene_id "Ledus.S2G142100"
Ledus.S2	AUGUSTUS	exon	10849401	10849700	.	+	.	transcript_id "Ledus.S2G142100.t1"; gene_id "Ledus.S2G142100"
Ledus.S2	AUGUSTUS	stop_codon	10849701	10849703	.	+	0	transcript_id "Ledus.S2G142100.t1"; gene_id "Ledus.S2G142100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10960.t1 is derived from g4578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	910690	913097	.	+	.	Ledus.S4G011600
Ledus.S4	AUGUSTUS	transcript	910690	913097	.	+	.	transcript_id "Ledus.S4G011600.t1"; gene_id "Ledus.S4G011600"
Ledus.S4	AUGUSTUS	start_codon	910690	910692	.	+	0	transcript_id "Ledus.S4G011600.t1"; gene_id "Ledus.S4G011600"
Ledus.S4	AUGUSTUS	CDS	910690	912450	0.63	+	0	transcript_id "Ledus.S4G011600.t1"; gene_id "Ledus.S4G011600"
Ledus.S4	AUGUSTUS	exon	910690	912450	.	+	.	transcript_id "Ledus.S4G011600.t1"; gene_id "Ledus.S4G011600"
Ledus.S4	AUGUSTUS	intron	912451	912563	.	+	.	transcript_id "Ledus.S4G011600.t1"; gene_id "Ledus.S4G011600"
Ledus.S4	AUGUSTUS	CDS	912564	913097	1	+	0	transcript_id "Ledus.S4G011600.t1"; gene_id "Ledus.S4G011600"
Ledus.S4	AUGUSTUS	exon	912564	913097	.	+	.	transcript_id "Ledus.S4G011600.t1"; gene_id "Ledus.S4G011600"
Ledus.S4	AUGUSTUS	stop_codon	913098	913100	.	+	0	transcript_id "Ledus.S4G011600.t1"; gene_id "Ledus.S4G011600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10271.t1 is derived from g11301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13923376	13925013	.	+	.	Ledus.S3G174800
Ledus.S3	AUGUSTUS	transcript	13923376	13925013	.	+	.	transcript_id "Ledus.S3G174800.t1"; gene_id "Ledus.S3G174800"
Ledus.S3	AUGUSTUS	start_codon	13923376	13923378	.	+	0	transcript_id "Ledus.S3G174800.t1"; gene_id "Ledus.S3G174800"
Ledus.S3	AUGUSTUS	CDS	13923376	13925013	0.58	+	0	transcript_id "Ledus.S3G174800.t1"; gene_id "Ledus.S3G174800"
Ledus.S3	AUGUSTUS	exon	13923376	13925013	.	+	.	transcript_id "Ledus.S3G174800.t1"; gene_id "Ledus.S3G174800"
Ledus.S3	AUGUSTUS	stop_codon	13925014	13925016	.	+	0	transcript_id "Ledus.S3G174800.t1"; gene_id "Ledus.S3G174800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2284.t1 is derived from g9147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16946854	16948425	.	+	.	Ledus.S2G216600
Ledus.S2	AUGUSTUS	transcript	16946854	16948425	.	+	.	transcript_id "Ledus.S2G216600.t1"; gene_id "Ledus.S2G216600"
Ledus.S2	AUGUSTUS	start_codon	16946854	16946856	.	+	0	transcript_id "Ledus.S2G216600.t1"; gene_id "Ledus.S2G216600"
Ledus.S2	AUGUSTUS	CDS	16946854	16947516	0.84	+	0	transcript_id "Ledus.S2G216600.t1"; gene_id "Ledus.S2G216600"
Ledus.S2	AUGUSTUS	exon	16946854	16947516	.	+	.	transcript_id "Ledus.S2G216600.t1"; gene_id "Ledus.S2G216600"
Ledus.S2	AUGUSTUS	intron	16947517	16947603	.	+	.	transcript_id "Ledus.S2G216600.t1"; gene_id "Ledus.S2G216600"
Ledus.S2	AUGUSTUS	CDS	16947604	16947946	1	+	0	transcript_id "Ledus.S2G216600.t1"; gene_id "Ledus.S2G216600"
Ledus.S2	AUGUSTUS	exon	16947604	16947946	.	+	.	transcript_id "Ledus.S2G216600.t1"; gene_id "Ledus.S2G216600"
Ledus.S2	AUGUSTUS	intron	16947947	16948123	.	+	.	transcript_id "Ledus.S2G216600.t1"; gene_id "Ledus.S2G216600"
Ledus.S2	AUGUSTUS	CDS	16948124	16948425	0.85	+	2	transcript_id "Ledus.S2G216600.t1"; gene_id "Ledus.S2G216600"
Ledus.S2	AUGUSTUS	exon	16948124	16948425	.	+	.	transcript_id "Ledus.S2G216600.t1"; gene_id "Ledus.S2G216600"
Ledus.S2	AUGUSTUS	stop_codon	16948426	16948428	.	+	0	transcript_id "Ledus.S2G216600.t1"; gene_id "Ledus.S2G216600"
# This transcript jg9127.t2 is derived from g10157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9128.t1 is derived from g10158.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4711256	4715374	.	+	.	Ledus.S3G060500
Ledus.S3	AUGUSTUS	transcript	4711256	4715374	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	start_codon	4711256	4711258	.	+	0	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4711256	4711426	0.75	+	0	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4711256	4711426	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4711427	4711590	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4711591	4711718	0.93	+	0	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4711591	4711718	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4711719	4711803	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4711804	4711872	0.96	+	1	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4711804	4711872	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4711873	4712048	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4712049	4712156	0.42	+	1	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4712049	4712156	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4712157	4712266	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4712267	4712337	0.89	+	1	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4712267	4712337	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4712338	4712495	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4712496	4712576	0.9	+	2	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4712496	4712576	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4712577	4712673	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4712674	4712935	0.92	+	2	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4712674	4712935	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4712936	4713022	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4713023	4713134	1	+	1	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4713023	4713134	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4713135	4713219	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4713220	4713392	1	+	0	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4713220	4713392	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4713393	4713527	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4713528	4713621	1	+	1	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4713528	4713621	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4713622	4713713	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4713714	4713800	1	+	0	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4713714	4713800	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4713801	4713922	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4713923	4713988	1	+	0	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4713923	4713988	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4713989	4714095	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4714096	4714155	1	+	0	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4714096	4714155	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4714156	4714315	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4714316	4714380	1	+	0	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4714316	4714380	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4714381	4714505	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4714506	4714584	1	+	1	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4714506	4714584	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4714585	4714682	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4714683	4714924	1	+	0	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4714683	4714924	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4714925	4715060	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4715061	4715135	1	+	1	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4715061	4715135	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4715136	4715259	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4715260	4715374	0.97	+	1	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4715260	4715374	.	+	.	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	stop_codon	4715375	4715377	.	+	0	transcript_id "Ledus.S3G060500.t1"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	transcript	4711256	4715374	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	start_codon	4711256	4711258	.	+	0	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4711256	4711426	0.73	+	0	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4711256	4711426	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4711427	4711590	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4711591	4711718	0.92	+	0	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4711591	4711718	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4711719	4711803	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4711804	4711872	0.96	+	1	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4711804	4711872	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4711873	4712048	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4712049	4712156	0.38	+	1	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4712049	4712156	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4712157	4712452	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4712453	4712638	0.67	+	1	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4712453	4712638	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4712639	4712731	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4712732	4712935	1	+	1	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4712732	4712935	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4712936	4713022	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4713023	4713134	1	+	1	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4713023	4713134	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4713135	4713219	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4713220	4713392	1	+	0	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4713220	4713392	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4713393	4713527	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4713528	4713621	1	+	1	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4713528	4713621	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4713622	4713713	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4713714	4713800	1	+	0	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4713714	4713800	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4713801	4713922	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4713923	4713988	1	+	0	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4713923	4713988	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4713989	4714095	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4714096	4714155	1	+	0	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4714096	4714155	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4714156	4714315	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4714316	4714380	1	+	0	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4714316	4714380	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4714381	4714505	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4714506	4714584	1	+	1	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4714506	4714584	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4714585	4714682	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4714683	4714924	1	+	0	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4714683	4714924	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4714925	4715060	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4715061	4715135	1	+	1	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4715061	4715135	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	intron	4715136	4715259	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	CDS	4715260	4715374	0.96	+	1	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	exon	4715260	4715374	.	+	.	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
Ledus.S3	AUGUSTUS	stop_codon	4715375	4715377	.	+	0	transcript_id "Ledus.S3G060500.t2"; gene_id "Ledus.S3G060500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1231.t1 is derived from g8092.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8759899	8761500	.	+	.	Ledus.S2G111300
Ledus.S2	AUGUSTUS	transcript	8759899	8761500	.	+	.	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	start_codon	8759899	8759901	.	+	0	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	CDS	8759899	8760195	0.98	+	0	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	exon	8759899	8760195	.	+	.	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	intron	8760196	8760310	.	+	.	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	CDS	8760311	8760454	1	+	0	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	exon	8760311	8760454	.	+	.	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	intron	8760455	8760539	.	+	.	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	CDS	8760540	8760752	1	+	0	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	exon	8760540	8760752	.	+	.	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	intron	8760753	8760960	.	+	.	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	CDS	8760961	8761153	1	+	0	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	exon	8760961	8761153	.	+	.	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	intron	8761154	8761240	.	+	.	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	CDS	8761241	8761500	0.99	+	2	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	exon	8761241	8761500	.	+	.	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
Ledus.S2	AUGUSTUS	stop_codon	8761501	8761503	.	+	0	transcript_id "Ledus.S2G111300.t1"; gene_id "Ledus.S2G111300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7620.t1 is derived from g12291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4406695	4407021	.	+	.	Ledus.S5G039800
Ledus.S5	AUGUSTUS	transcript	4406695	4407021	.	+	.	transcript_id "Ledus.S5G039800.t1"; gene_id "Ledus.S5G039800"
Ledus.S5	AUGUSTUS	start_codon	4406695	4406697	.	+	0	transcript_id "Ledus.S5G039800.t1"; gene_id "Ledus.S5G039800"
Ledus.S5	AUGUSTUS	CDS	4406695	4407021	0.92	+	0	transcript_id "Ledus.S5G039800.t1"; gene_id "Ledus.S5G039800"
Ledus.S5	AUGUSTUS	exon	4406695	4407021	.	+	.	transcript_id "Ledus.S5G039800.t1"; gene_id "Ledus.S5G039800"
Ledus.S5	AUGUSTUS	stop_codon	4407022	4407024	.	+	0	transcript_id "Ledus.S5G039800.t1"; gene_id "Ledus.S5G039800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4390.t1 is derived from g1826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16763647	16771311	.	+	.	Ledus.S1G181100
Ledus.S1	AUGUSTUS	transcript	16763647	16771311	.	+	.	transcript_id "Ledus.S1G181100.t1"; gene_id "Ledus.S1G181100"
Ledus.S1	AUGUSTUS	start_codon	16763647	16763649	.	+	0	transcript_id "Ledus.S1G181100.t1"; gene_id "Ledus.S1G181100"
Ledus.S1	AUGUSTUS	CDS	16763647	16771311	1	+	0	transcript_id "Ledus.S1G181100.t1"; gene_id "Ledus.S1G181100"
Ledus.S1	AUGUSTUS	exon	16763647	16771311	.	+	.	transcript_id "Ledus.S1G181100.t1"; gene_id "Ledus.S1G181100"
Ledus.S1	AUGUSTUS	stop_codon	16771312	16771314	.	+	0	transcript_id "Ledus.S1G181100.t1"; gene_id "Ledus.S1G181100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8836.t1 is derived from g9866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2215884	2216773	.	+	.	Ledus.S3G031300
Ledus.S3	AUGUSTUS	transcript	2215884	2216773	.	+	.	transcript_id "Ledus.S3G031300.t1"; gene_id "Ledus.S3G031300"
Ledus.S3	AUGUSTUS	start_codon	2215884	2215886	.	+	0	transcript_id "Ledus.S3G031300.t1"; gene_id "Ledus.S3G031300"
Ledus.S3	AUGUSTUS	CDS	2215884	2216169	0.64	+	0	transcript_id "Ledus.S3G031300.t1"; gene_id "Ledus.S3G031300"
Ledus.S3	AUGUSTUS	exon	2215884	2216169	.	+	.	transcript_id "Ledus.S3G031300.t1"; gene_id "Ledus.S3G031300"
Ledus.S3	AUGUSTUS	intron	2216170	2216243	.	+	.	transcript_id "Ledus.S3G031300.t1"; gene_id "Ledus.S3G031300"
Ledus.S3	AUGUSTUS	CDS	2216244	2216773	1	+	2	transcript_id "Ledus.S3G031300.t1"; gene_id "Ledus.S3G031300"
Ledus.S3	AUGUSTUS	exon	2216244	2216773	.	+	.	transcript_id "Ledus.S3G031300.t1"; gene_id "Ledus.S3G031300"
Ledus.S3	AUGUSTUS	stop_codon	2216774	2216776	.	+	0	transcript_id "Ledus.S3G031300.t1"; gene_id "Ledus.S3G031300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10132.t1 is derived from g11162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12962056	12964793	.	-	.	Ledus.S3G160900
Ledus.S3	AUGUSTUS	transcript	12962056	12964793	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	stop_codon	12962053	12962055	.	-	0	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12962056	12962136	0.97	-	0	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12962056	12962136	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12962137	12962264	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12962265	12962312	0.97	-	0	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12962265	12962312	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12962313	12962384	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12962385	12962438	1	-	0	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12962385	12962438	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12962439	12962555	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12962556	12962627	1	-	0	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12962556	12962627	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12962628	12962874	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12962875	12962991	1	-	0	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12962875	12962991	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12962992	12963146	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12963147	12963221	1	-	0	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12963147	12963221	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12963222	12963392	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12963393	12963485	0.91	-	0	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12963393	12963485	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12963486	12963797	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12963798	12963912	0.83	-	1	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12963798	12963912	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12963913	12964028	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12964029	12964144	1	-	0	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12964029	12964144	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12964145	12964236	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12964237	12964380	0.92	-	0	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12964237	12964380	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12964381	12964499	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12964500	12964793	0.3	-	0	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12964500	12964793	.	-	.	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	start_codon	12964791	12964793	.	-	0	transcript_id "Ledus.S3G160900.t1"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	transcript	12962056	12964793	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	stop_codon	12962053	12962055	.	-	0	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12962056	12962136	0.96	-	0	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12962056	12962136	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12962137	12962264	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12962265	12962312	0.96	-	0	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12962265	12962312	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12962313	12962384	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12962385	12962438	1	-	0	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12962385	12962438	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12962439	12962555	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12962556	12962627	1	-	0	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12962556	12962627	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12962628	12962874	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12962875	12962991	1	-	0	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12962875	12962991	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12962992	12963146	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12963147	12963221	1	-	0	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12963147	12963221	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12963222	12963392	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12963393	12963485	0.92	-	0	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12963393	12963485	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12963486	12963797	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12963798	12963912	0.89	-	1	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12963798	12963912	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12963913	12964028	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12964029	12964144	1	-	0	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12964029	12964144	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12964145	12964236	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12964237	12964295	0.62	-	2	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12964237	12964295	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12964296	12964499	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12964500	12964521	0.52	-	0	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12964500	12964521	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	intron	12964522	12964592	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	CDS	12964593	12964793	0.43	-	0	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	exon	12964593	12964793	.	-	.	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
Ledus.S3	AUGUSTUS	start_codon	12964791	12964793	.	-	0	transcript_id "Ledus.S3G160900.t2"; gene_id "Ledus.S3G160900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3820.t1 is derived from g1256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12744943	12745605	.	-	.	Ledus.S1G124100
Ledus.S1	AUGUSTUS	transcript	12744943	12745605	.	-	.	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	stop_codon	12744940	12744942	.	-	0	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	CDS	12744943	12744963	0.99	-	0	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	exon	12744943	12744963	.	-	.	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	intron	12744964	12745119	.	-	.	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	CDS	12745120	12745179	0.41	-	0	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	exon	12745120	12745179	.	-	.	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	intron	12745180	12745369	.	-	.	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	CDS	12745370	12745462	0.65	-	0	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	exon	12745370	12745462	.	-	.	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	intron	12745463	12745548	.	-	.	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	CDS	12745549	12745605	0.53	-	0	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	exon	12745549	12745605	.	-	.	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
Ledus.S1	AUGUSTUS	start_codon	12745603	12745605	.	-	0	transcript_id "Ledus.S1G124100.t1"; gene_id "Ledus.S1G124100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3801.t1 is derived from g1237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12342205	12345646	.	+	.	Ledus.S1G122200
Ledus.S1	AUGUSTUS	transcript	12342205	12345646	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	start_codon	12342205	12342207	.	+	0	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	CDS	12342205	12342297	0.51	+	0	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	exon	12342205	12342297	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	intron	12342298	12342675	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	CDS	12342676	12342942	1	+	0	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	exon	12342676	12342942	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	intron	12342943	12343210	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	CDS	12343211	12343429	0.97	+	0	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	exon	12343211	12343429	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	intron	12343430	12343599	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	CDS	12343600	12343737	1	+	0	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	exon	12343600	12343737	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	intron	12343738	12343923	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	CDS	12343924	12344091	1	+	0	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	exon	12343924	12344091	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	intron	12344092	12344362	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	CDS	12344363	12344476	1	+	0	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	exon	12344363	12344476	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	intron	12344477	12344696	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	CDS	12344697	12344804	1	+	0	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	exon	12344697	12344804	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	intron	12344805	12344991	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	CDS	12344992	12345083	1	+	0	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	exon	12344992	12345083	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	intron	12345084	12345243	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	CDS	12345244	12345646	0.92	+	1	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	exon	12345244	12345646	.	+	.	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
Ledus.S1	AUGUSTUS	stop_codon	12345647	12345649	.	+	0	transcript_id "Ledus.S1G122200.t1"; gene_id "Ledus.S1G122200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12835.t1 is derived from g9536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C16	AUGUSTUS	gene	52943	53422	.	-	.	Ledus.C16G000600
Ledus.C16	AUGUSTUS	transcript	52943	53320	.	-	.	transcript_id "Ledus.C16G000600.t1"; gene_id "Ledus.C16G000600"
Ledus.C16	AUGUSTUS	stop_codon	52940	52942	.	-	0	transcript_id "Ledus.C16G000600.t1"; gene_id "Ledus.C16G000600"
Ledus.C16	AUGUSTUS	CDS	52943	53320	0.99	-	0	transcript_id "Ledus.C16G000600.t1"; gene_id "Ledus.C16G000600"
Ledus.C16	AUGUSTUS	exon	52943	53320	.	-	.	transcript_id "Ledus.C16G000600.t1"; gene_id "Ledus.C16G000600"
Ledus.C16	AUGUSTUS	start_codon	53318	53320	.	-	0	transcript_id "Ledus.C16G000600.t1"; gene_id "Ledus.C16G000600"
Ledus.C16	AUGUSTUS	transcript	52943	53422	.	-	.	transcript_id "Ledus.C16G000600.t2"; gene_id "Ledus.C16G000600"
Ledus.C16	AUGUSTUS	stop_codon	52940	52942	.	-	0	transcript_id "Ledus.C16G000600.t2"; gene_id "Ledus.C16G000600"
Ledus.C16	AUGUSTUS	CDS	52943	53422	0.59	-	0	transcript_id "Ledus.C16G000600.t2"; gene_id "Ledus.C16G000600"
Ledus.C16	AUGUSTUS	exon	52943	53422	.	-	.	transcript_id "Ledus.C16G000600.t2"; gene_id "Ledus.C16G000600"
Ledus.C16	AUGUSTUS	start_codon	53420	53422	.	-	0	transcript_id "Ledus.C16G000600.t2"; gene_id "Ledus.C16G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8467.t1 is derived from g13139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11929112	11929522	.	+	.	Ledus.S5G124500
Ledus.S5	AUGUSTUS	transcript	11929112	11929522	.	+	.	transcript_id "Ledus.S5G124500.t1"; gene_id "Ledus.S5G124500"
Ledus.S5	AUGUSTUS	start_codon	11929112	11929114	.	+	0	transcript_id "Ledus.S5G124500.t1"; gene_id "Ledus.S5G124500"
Ledus.S5	AUGUSTUS	CDS	11929112	11929522	0.9	+	0	transcript_id "Ledus.S5G124500.t1"; gene_id "Ledus.S5G124500"
Ledus.S5	AUGUSTUS	exon	11929112	11929522	.	+	.	transcript_id "Ledus.S5G124500.t1"; gene_id "Ledus.S5G124500"
Ledus.S5	AUGUSTUS	stop_codon	11929523	11929525	.	+	0	transcript_id "Ledus.S5G124500.t1"; gene_id "Ledus.S5G124500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1914.t1 is derived from g8777.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13376331	13379624	.	+	.	Ledus.S2G179600
Ledus.S2	AUGUSTUS	transcript	13376331	13379624	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	start_codon	13376331	13376333	.	+	0	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13376331	13376604	0.81	+	0	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13376331	13376604	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13376605	13376902	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13376903	13377009	0.28	+	2	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13376903	13377009	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13377010	13377058	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13377059	13377168	1	+	0	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13377059	13377168	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13377169	13377331	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13377332	13377369	1	+	1	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13377332	13377369	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13377370	13377465	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13377466	13377495	0.91	+	2	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13377466	13377495	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13377496	13377684	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13377685	13377762	0.94	+	2	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13377685	13377762	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13377763	13377866	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13377867	13377920	0.96	+	2	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13377867	13377920	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13377921	13378009	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13378010	13378111	1	+	2	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13378010	13378111	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13378112	13378194	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13378195	13378283	1	+	2	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13378195	13378283	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13378284	13378383	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13378384	13378487	1	+	0	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13378384	13378487	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13378488	13378582	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13378583	13378651	1	+	1	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13378583	13378651	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13378652	13378748	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13378749	13378864	1	+	1	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13378749	13378864	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13378865	13378953	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13378954	13378988	1	+	2	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13378954	13378988	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13378989	13379097	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13379098	13379240	1	+	0	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13379098	13379240	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13379241	13379319	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13379320	13379442	1	+	1	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13379320	13379442	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	intron	13379443	13379530	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	CDS	13379531	13379624	1	+	1	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	exon	13379531	13379624	.	+	.	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
Ledus.S2	AUGUSTUS	stop_codon	13379625	13379627	.	+	0	transcript_id "Ledus.S2G179600.t1"; gene_id "Ledus.S2G179600"
# This transcript jg3566.t2 is derived from g1002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3567.t1 is derived from g1003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9634898	9636966	.	-	.	Ledus.S1G098800
Ledus.S1	AUGUSTUS	transcript	9634898	9636966	.	-	.	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	stop_codon	9634895	9634897	.	-	0	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	CDS	9634898	9634985	0.76	-	1	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	exon	9634898	9634985	.	-	.	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	intron	9634986	9635070	.	-	.	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	CDS	9635071	9635163	0.76	-	1	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	exon	9635071	9635163	.	-	.	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	intron	9635164	9635260	.	-	.	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	CDS	9635261	9635325	1	-	0	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	exon	9635261	9635325	.	-	.	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	intron	9635326	9635412	.	-	.	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	CDS	9635413	9635454	0.45	-	0	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	exon	9635413	9635454	.	-	.	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	intron	9635455	9635535	.	-	.	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	CDS	9635536	9636966	0.64	-	0	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	exon	9635536	9636966	.	-	.	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
Ledus.S1	AUGUSTUS	start_codon	9636964	9636966	.	-	0	transcript_id "Ledus.S1G098800.t1"; gene_id "Ledus.S1G098800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5802.t1 is derived from g3244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27016583	27017008	.	+	.	Ledus.S1G322300
Ledus.S1	AUGUSTUS	transcript	27016583	27017008	.	+	.	transcript_id "Ledus.S1G322300.t1"; gene_id "Ledus.S1G322300"
Ledus.S1	AUGUSTUS	start_codon	27016583	27016585	.	+	0	transcript_id "Ledus.S1G322300.t1"; gene_id "Ledus.S1G322300"
Ledus.S1	AUGUSTUS	CDS	27016583	27017008	0.84	+	0	transcript_id "Ledus.S1G322300.t1"; gene_id "Ledus.S1G322300"
Ledus.S1	AUGUSTUS	exon	27016583	27017008	.	+	.	transcript_id "Ledus.S1G322300.t1"; gene_id "Ledus.S1G322300"
Ledus.S1	AUGUSTUS	stop_codon	27017009	27017011	.	+	0	transcript_id "Ledus.S1G322300.t1"; gene_id "Ledus.S1G322300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12182.t1 is derived from g5801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10188194	10188595	.	+	.	Ledus.S4G133800
Ledus.S4	AUGUSTUS	transcript	10188194	10188595	.	+	.	transcript_id "Ledus.S4G133800.t1"; gene_id "Ledus.S4G133800"
Ledus.S4	AUGUSTUS	start_codon	10188194	10188196	.	+	0	transcript_id "Ledus.S4G133800.t1"; gene_id "Ledus.S4G133800"
Ledus.S4	AUGUSTUS	CDS	10188194	10188595	0.31	+	0	transcript_id "Ledus.S4G133800.t1"; gene_id "Ledus.S4G133800"
Ledus.S4	AUGUSTUS	exon	10188194	10188595	.	+	.	transcript_id "Ledus.S4G133800.t1"; gene_id "Ledus.S4G133800"
Ledus.S4	AUGUSTUS	stop_codon	10188596	10188598	.	+	0	transcript_id "Ledus.S4G133800.t1"; gene_id "Ledus.S4G133800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg59.t1 is derived from g9472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	172975	173861	.	+	.	Ledus.C8G001900
Ledus.C8	AUGUSTUS	transcript	172975	173861	.	+	.	transcript_id "Ledus.C8G001900.t1"; gene_id "Ledus.C8G001900"
Ledus.C8	AUGUSTUS	start_codon	172975	172977	.	+	0	transcript_id "Ledus.C8G001900.t1"; gene_id "Ledus.C8G001900"
Ledus.C8	AUGUSTUS	CDS	172975	173121	0.97	+	0	transcript_id "Ledus.C8G001900.t1"; gene_id "Ledus.C8G001900"
Ledus.C8	AUGUSTUS	exon	172975	173121	.	+	.	transcript_id "Ledus.C8G001900.t1"; gene_id "Ledus.C8G001900"
Ledus.C8	AUGUSTUS	intron	173122	173230	.	+	.	transcript_id "Ledus.C8G001900.t1"; gene_id "Ledus.C8G001900"
Ledus.C8	AUGUSTUS	CDS	173231	173279	1	+	0	transcript_id "Ledus.C8G001900.t1"; gene_id "Ledus.C8G001900"
Ledus.C8	AUGUSTUS	exon	173231	173279	.	+	.	transcript_id "Ledus.C8G001900.t1"; gene_id "Ledus.C8G001900"
Ledus.C8	AUGUSTUS	intron	173280	173400	.	+	.	transcript_id "Ledus.C8G001900.t1"; gene_id "Ledus.C8G001900"
Ledus.C8	AUGUSTUS	CDS	173401	173861	1	+	2	transcript_id "Ledus.C8G001900.t1"; gene_id "Ledus.C8G001900"
Ledus.C8	AUGUSTUS	exon	173401	173861	.	+	.	transcript_id "Ledus.C8G001900.t1"; gene_id "Ledus.C8G001900"
Ledus.C8	AUGUSTUS	stop_codon	173862	173864	.	+	0	transcript_id "Ledus.C8G001900.t1"; gene_id "Ledus.C8G001900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8099.t1 is derived from g12770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9135354	9136220	.	-	.	Ledus.S5G087700
Ledus.S5	AUGUSTUS	transcript	9135354	9136220	.	-	.	transcript_id "Ledus.S5G087700.t1"; gene_id "Ledus.S5G087700"
Ledus.S5	AUGUSTUS	stop_codon	9135351	9135353	.	-	0	transcript_id "Ledus.S5G087700.t1"; gene_id "Ledus.S5G087700"
Ledus.S5	AUGUSTUS	CDS	9135354	9136220	0.88	-	0	transcript_id "Ledus.S5G087700.t1"; gene_id "Ledus.S5G087700"
Ledus.S5	AUGUSTUS	exon	9135354	9136220	.	-	.	transcript_id "Ledus.S5G087700.t1"; gene_id "Ledus.S5G087700"
Ledus.S5	AUGUSTUS	start_codon	9136218	9136220	.	-	0	transcript_id "Ledus.S5G087700.t1"; gene_id "Ledus.S5G087700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg181.t1 is derived from g7042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	595930	602466	.	+	.	Ledus.S2G006300
Ledus.S2	AUGUSTUS	transcript	595930	602466	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	start_codon	595930	595932	.	+	0	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	595930	598663	0.61	+	0	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	595930	598663	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	intron	598664	598767	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	598768	599090	0.99	+	2	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	598768	599090	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	intron	599091	599193	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	599194	599468	0.91	+	0	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	599194	599468	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	intron	599469	599547	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	599548	599875	1	+	1	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	599548	599875	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	intron	599876	599966	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	599967	600146	1	+	0	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	599967	600146	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	intron	600147	600238	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	600239	600845	0.89	+	0	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	600239	600845	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	intron	600846	600930	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	600931	601008	1	+	2	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	600931	601008	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	intron	601009	601085	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	601086	601187	0.74	+	2	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	601086	601187	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	intron	601188	601259	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	601260	601437	0.94	+	2	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	601260	601437	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	intron	601438	601518	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	601519	601610	1	+	1	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	601519	601610	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	intron	601611	601701	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	601702	601868	1	+	2	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	601702	601868	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	intron	601869	601954	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	601955	602063	1	+	0	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	601955	602063	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	intron	602064	602332	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	CDS	602333	602466	0.58	+	2	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	exon	602333	602466	.	+	.	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
Ledus.S2	AUGUSTUS	stop_codon	602467	602469	.	+	0	transcript_id "Ledus.S2G006300.t1"; gene_id "Ledus.S2G006300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12488.t1 is derived from g6109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12344201	12345382	.	-	.	Ledus.S4G164400
Ledus.S4	AUGUSTUS	transcript	12344201	12345382	.	-	.	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	stop_codon	12344198	12344200	.	-	0	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	CDS	12344201	12344601	1	-	2	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	exon	12344201	12344601	.	-	.	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	intron	12344602	12344702	.	-	.	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	CDS	12344703	12344834	1	-	2	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	exon	12344703	12344834	.	-	.	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	intron	12344835	12344915	.	-	.	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	CDS	12344916	12344967	1	-	0	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	exon	12344916	12344967	.	-	.	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	intron	12344968	12345065	.	-	.	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	CDS	12345066	12345158	1	-	0	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	exon	12345066	12345158	.	-	.	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	intron	12345159	12345253	.	-	.	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	CDS	12345254	12345382	0.5	-	0	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	exon	12345254	12345382	.	-	.	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
Ledus.S4	AUGUSTUS	start_codon	12345380	12345382	.	-	0	transcript_id "Ledus.S4G164400.t1"; gene_id "Ledus.S4G164400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11286.t1 is derived from g4904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3375779	3378099	.	+	.	Ledus.S4G044200
Ledus.S4	AUGUSTUS	transcript	3375779	3378099	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	start_codon	3375779	3375781	.	+	0	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	CDS	3375779	3375781	1	+	0	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	exon	3375779	3375781	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	intron	3375782	3375872	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	CDS	3375873	3376110	1	+	0	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	exon	3375873	3376110	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	intron	3376111	3376194	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	CDS	3376195	3376406	1	+	2	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	exon	3376195	3376406	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	intron	3376407	3376568	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	CDS	3376569	3376904	1	+	0	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	exon	3376569	3376904	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	intron	3376905	3376994	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	CDS	3376995	3377069	1	+	0	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	exon	3376995	3377069	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	intron	3377070	3377207	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	CDS	3377208	3377282	1	+	0	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	exon	3377208	3377282	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	intron	3377283	3377430	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	CDS	3377431	3378099	0.89	+	0	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	exon	3377431	3378099	.	+	.	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
Ledus.S4	AUGUSTUS	stop_codon	3378100	3378102	.	+	0	transcript_id "Ledus.S4G044200.t1"; gene_id "Ledus.S4G044200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4628.t1 is derived from g2065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18364944	18365984	.	+	.	Ledus.S1G204900
Ledus.S1	AUGUSTUS	transcript	18364944	18365984	.	+	.	transcript_id "Ledus.S1G204900.t1"; gene_id "Ledus.S1G204900"
Ledus.S1	AUGUSTUS	start_codon	18364944	18364946	.	+	0	transcript_id "Ledus.S1G204900.t1"; gene_id "Ledus.S1G204900"
Ledus.S1	AUGUSTUS	CDS	18364944	18365984	0.98	+	0	transcript_id "Ledus.S1G204900.t1"; gene_id "Ledus.S1G204900"
Ledus.S1	AUGUSTUS	exon	18364944	18365984	.	+	.	transcript_id "Ledus.S1G204900.t1"; gene_id "Ledus.S1G204900"
Ledus.S1	AUGUSTUS	stop_codon	18365985	18365987	.	+	0	transcript_id "Ledus.S1G204900.t1"; gene_id "Ledus.S1G204900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11964.t1 is derived from g5583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8048927	8051409	.	+	.	Ledus.S4G112000
Ledus.S4	AUGUSTUS	transcript	8048927	8051409	.	+	.	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	start_codon	8048927	8048929	.	+	0	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	CDS	8048927	8050619	0.91	+	0	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	exon	8048927	8050619	.	+	.	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	intron	8050620	8050826	.	+	.	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	CDS	8050827	8050924	1	+	2	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	exon	8050827	8050924	.	+	.	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	intron	8050925	8051105	.	+	.	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	CDS	8051106	8051133	1	+	0	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	exon	8051106	8051133	.	+	.	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	intron	8051134	8051305	.	+	.	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	CDS	8051306	8051409	0.95	+	2	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	exon	8051306	8051409	.	+	.	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
Ledus.S4	AUGUSTUS	stop_codon	8051410	8051412	.	+	0	transcript_id "Ledus.S4G112000.t1"; gene_id "Ledus.S4G112000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9184.t1 is derived from g10214.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5276586	5277605	.	+	.	Ledus.S3G066100
Ledus.S3	AUGUSTUS	transcript	5276586	5277605	.	+	.	transcript_id "Ledus.S3G066100.t1"; gene_id "Ledus.S3G066100"
Ledus.S3	AUGUSTUS	start_codon	5276586	5276588	.	+	0	transcript_id "Ledus.S3G066100.t1"; gene_id "Ledus.S3G066100"
Ledus.S3	AUGUSTUS	CDS	5276586	5277605	0.99	+	0	transcript_id "Ledus.S3G066100.t1"; gene_id "Ledus.S3G066100"
Ledus.S3	AUGUSTUS	exon	5276586	5277605	.	+	.	transcript_id "Ledus.S3G066100.t1"; gene_id "Ledus.S3G066100"
Ledus.S3	AUGUSTUS	stop_codon	5277606	5277608	.	+	0	transcript_id "Ledus.S3G066100.t1"; gene_id "Ledus.S3G066100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9532.t1 is derived from g10562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7610653	7611845	.	-	.	Ledus.S3G100900
Ledus.S3	AUGUSTUS	transcript	7610653	7611845	.	-	.	transcript_id "Ledus.S3G100900.t1"; gene_id "Ledus.S3G100900"
Ledus.S3	AUGUSTUS	stop_codon	7610650	7610652	.	-	0	transcript_id "Ledus.S3G100900.t1"; gene_id "Ledus.S3G100900"
Ledus.S3	AUGUSTUS	CDS	7610653	7611022	0.98	-	1	transcript_id "Ledus.S3G100900.t1"; gene_id "Ledus.S3G100900"
Ledus.S3	AUGUSTUS	exon	7610653	7611022	.	-	.	transcript_id "Ledus.S3G100900.t1"; gene_id "Ledus.S3G100900"
Ledus.S3	AUGUSTUS	intron	7611023	7611121	.	-	.	transcript_id "Ledus.S3G100900.t1"; gene_id "Ledus.S3G100900"
Ledus.S3	AUGUSTUS	CDS	7611122	7611318	1	-	0	transcript_id "Ledus.S3G100900.t1"; gene_id "Ledus.S3G100900"
Ledus.S3	AUGUSTUS	exon	7611122	7611318	.	-	.	transcript_id "Ledus.S3G100900.t1"; gene_id "Ledus.S3G100900"
Ledus.S3	AUGUSTUS	intron	7611319	7611401	.	-	.	transcript_id "Ledus.S3G100900.t1"; gene_id "Ledus.S3G100900"
Ledus.S3	AUGUSTUS	CDS	7611402	7611845	0.8	-	0	transcript_id "Ledus.S3G100900.t1"; gene_id "Ledus.S3G100900"
Ledus.S3	AUGUSTUS	exon	7611402	7611845	.	-	.	transcript_id "Ledus.S3G100900.t1"; gene_id "Ledus.S3G100900"
Ledus.S3	AUGUSTUS	start_codon	7611843	7611845	.	-	0	transcript_id "Ledus.S3G100900.t1"; gene_id "Ledus.S3G100900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7209.t1 is derived from g6740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2192027	2194576	.	-	.	Ledus.C7G027000
Ledus.C7	AUGUSTUS	transcript	2192027	2194576	.	-	.	transcript_id "Ledus.C7G027000.t1"; gene_id "Ledus.C7G027000"
Ledus.C7	AUGUSTUS	stop_codon	2192024	2192026	.	-	0	transcript_id "Ledus.C7G027000.t1"; gene_id "Ledus.C7G027000"
Ledus.C7	AUGUSTUS	CDS	2192027	2194576	0.95	-	0	transcript_id "Ledus.C7G027000.t1"; gene_id "Ledus.C7G027000"
Ledus.C7	AUGUSTUS	exon	2192027	2194576	.	-	.	transcript_id "Ledus.C7G027000.t1"; gene_id "Ledus.C7G027000"
Ledus.C7	AUGUSTUS	start_codon	2194574	2194576	.	-	0	transcript_id "Ledus.C7G027000.t1"; gene_id "Ledus.C7G027000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11997.t1 is derived from g5616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8391025	8393507	.	+	.	Ledus.S4G115300
Ledus.S4	AUGUSTUS	transcript	8391025	8393507	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	start_codon	8391025	8391027	.	+	0	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	CDS	8391025	8391242	0.29	+	0	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	exon	8391025	8391242	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	intron	8391243	8391361	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	CDS	8391362	8391445	0.59	+	1	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	exon	8391362	8391445	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	intron	8391446	8391722	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	CDS	8391723	8391795	1	+	1	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	exon	8391723	8391795	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	intron	8391796	8392018	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	CDS	8392019	8392066	1	+	0	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	exon	8392019	8392066	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	intron	8392067	8392241	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	CDS	8392242	8392289	1	+	0	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	exon	8392242	8392289	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	intron	8392290	8392729	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	CDS	8392730	8392801	0.78	+	0	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	exon	8392730	8392801	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	intron	8392802	8392903	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	CDS	8392904	8393059	1	+	0	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	exon	8392904	8393059	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	intron	8393060	8393219	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	CDS	8393220	8393323	1	+	0	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	exon	8393220	8393323	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	intron	8393324	8393416	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	CDS	8393417	8393507	0.97	+	1	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	exon	8393417	8393507	.	+	.	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
Ledus.S4	AUGUSTUS	stop_codon	8393508	8393510	.	+	0	transcript_id "Ledus.S4G115300.t1"; gene_id "Ledus.S4G115300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5944.t1 is derived from g3387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27982355	27991163	.	-	.	Ledus.S1G336500
Ledus.S1	AUGUSTUS	transcript	27982355	27991163	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	stop_codon	27982352	27982354	.	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27982355	27982380	1	-	2	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27982355	27982380	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27982381	27982546	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27982547	27982617	1	-	1	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27982547	27982617	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27982618	27982706	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27982707	27982761	1	-	2	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27982707	27982761	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27982762	27982851	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27982852	27982944	1	-	2	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27982852	27982944	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27982945	27983040	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27983041	27983085	1	-	2	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27983041	27983085	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27983086	27983179	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27983180	27983257	0.83	-	2	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27983180	27983257	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27983258	27983338	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27983339	27983561	0.81	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27983339	27983561	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27983562	27983692	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27983693	27983788	1	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27983693	27983788	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27983789	27983898	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27983899	27983952	1	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27983899	27983952	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27983953	27984035	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27984036	27984132	1	-	1	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27984036	27984132	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27984133	27984273	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27984274	27984362	1	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27984274	27984362	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27984363	27984464	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27984465	27984542	0.99	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27984465	27984542	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27984543	27984710	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27984711	27984779	1	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27984711	27984779	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27984780	27984869	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27984870	27984953	1	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27984870	27984953	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27984954	27985195	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27985196	27985267	1	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27985196	27985267	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27985268	27985382	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27985383	27985457	1	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27985383	27985457	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27985458	27985717	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27985718	27985793	1	-	1	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27985718	27985793	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27985794	27986016	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27986017	27986078	1	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27986017	27986078	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27986079	27986159	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27986160	27986250	1	-	1	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27986160	27986250	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27986251	27986339	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27986340	27986413	1	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27986340	27986413	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27986414	27986585	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27986586	27986638	1	-	2	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27986586	27986638	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27986639	27986757	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27986758	27986932	0.98	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27986758	27986932	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27986933	27987006	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27987007	27987072	0.9	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27987007	27987072	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27987073	27987164	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27987165	27987224	0.36	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27987165	27987224	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27987225	27987989	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27987990	27988067	0.76	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27987990	27988067	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27988068	27988161	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27988162	27988273	0.96	-	1	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27988162	27988273	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27988274	27988369	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27988370	27988497	0.96	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27988370	27988497	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27988498	27988588	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27988589	27988710	1	-	2	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27988589	27988710	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27988711	27988828	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27988829	27988953	0.96	-	1	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27988829	27988953	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27988954	27989179	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27989180	27989409	0.97	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27989180	27989409	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27989410	27989519	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27989520	27989611	0.97	-	2	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27989520	27989611	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27989612	27989720	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27989721	27989918	1	-	2	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27989721	27989918	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27989919	27990101	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27990102	27990175	1	-	1	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27990102	27990175	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27990176	27990332	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27990333	27990417	0.99	-	2	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27990333	27990417	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27990418	27990519	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27990520	27990592	1	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27990520	27990592	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27990593	27990707	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27990708	27990828	1	-	1	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27990708	27990828	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	intron	27990829	27991023	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	CDS	27991024	27991163	0.46	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	exon	27991024	27991163	.	-	.	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
Ledus.S1	AUGUSTUS	start_codon	27991161	27991163	.	-	0	transcript_id "Ledus.S1G336500.t1"; gene_id "Ledus.S1G336500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11809.t1 is derived from g5428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6875863	6880126	.	-	.	Ledus.S4G096500
Ledus.S4	AUGUSTUS	transcript	6875863	6880126	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	stop_codon	6875860	6875862	.	-	0	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6875863	6876008	1	-	2	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6875863	6876008	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6876009	6876114	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6876115	6876392	0.95	-	1	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6876115	6876392	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6876393	6876466	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6876467	6876526	1	-	1	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6876467	6876526	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6876527	6876608	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6876609	6876802	1	-	0	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6876609	6876802	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6876803	6876885	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6876886	6877030	0.98	-	1	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6876886	6877030	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6877031	6877150	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6877151	6877386	0.77	-	0	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6877151	6877386	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6877387	6877668	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6877669	6877697	0.52	-	2	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6877669	6877697	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6877698	6877801	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6877802	6877911	1	-	1	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6877802	6877911	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6877912	6877986	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6877987	6878067	0.99	-	1	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6877987	6878067	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6878068	6878176	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6878177	6878216	0.91	-	2	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6878177	6878216	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6878217	6878387	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6878388	6878395	0.91	-	1	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6878388	6878395	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6878396	6878476	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6878477	6878487	0.91	-	0	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6878477	6878487	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6878488	6878845	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6878846	6879016	0.91	-	0	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6878846	6879016	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6879017	6879170	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6879171	6879291	1	-	1	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6879171	6879291	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	intron	6879292	6879431	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	CDS	6879432	6880126	1	-	0	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	exon	6879432	6880126	.	-	.	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
Ledus.S4	AUGUSTUS	start_codon	6880124	6880126	.	-	0	transcript_id "Ledus.S4G096500.t1"; gene_id "Ledus.S4G096500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11956.t1 is derived from g5575.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8008178	8009715	.	+	.	Ledus.S4G111200
Ledus.S4	AUGUSTUS	transcript	8008178	8009715	.	+	.	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	start_codon	8008178	8008180	.	+	0	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	CDS	8008178	8008226	0.66	+	0	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	exon	8008178	8008226	.	+	.	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	intron	8008227	8008324	.	+	.	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	CDS	8008325	8008686	1	+	2	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	exon	8008325	8008686	.	+	.	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	intron	8008687	8008776	.	+	.	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	CDS	8008777	8008946	1	+	0	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	exon	8008777	8008946	.	+	.	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	intron	8008947	8009145	.	+	.	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	CDS	8009146	8009377	1	+	1	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	exon	8009146	8009377	.	+	.	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	intron	8009378	8009475	.	+	.	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	CDS	8009476	8009715	1	+	0	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	exon	8009476	8009715	.	+	.	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	stop_codon	8009716	8009718	.	+	0	transcript_id "Ledus.S4G111200.t1"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	transcript	8008178	8009715	.	+	.	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	start_codon	8008178	8008180	.	+	0	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	CDS	8008178	8008226	0.63	+	0	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	exon	8008178	8008226	.	+	.	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	intron	8008227	8008312	.	+	.	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	CDS	8008313	8008686	1	+	2	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	exon	8008313	8008686	.	+	.	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	intron	8008687	8008776	.	+	.	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	CDS	8008777	8008946	1	+	0	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	exon	8008777	8008946	.	+	.	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	intron	8008947	8009145	.	+	.	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	CDS	8009146	8009377	1	+	1	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	exon	8009146	8009377	.	+	.	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	intron	8009378	8009475	.	+	.	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	CDS	8009476	8009715	1	+	0	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	exon	8009476	8009715	.	+	.	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
Ledus.S4	AUGUSTUS	stop_codon	8009716	8009718	.	+	0	transcript_id "Ledus.S4G111200.t2"; gene_id "Ledus.S4G111200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg533.t1 is derived from g7394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3073630	3075844	.	+	.	Ledus.S2G041500
Ledus.S2	AUGUSTUS	transcript	3073630	3075844	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	start_codon	3073630	3073632	.	+	0	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3073630	3073692	0.62	+	0	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3073630	3073692	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3073693	3073926	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3073927	3074096	1	+	0	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3073927	3074096	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3074097	3074242	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3074243	3074647	1	+	1	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3074243	3074647	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3074648	3074740	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3074741	3075137	1	+	1	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3074741	3075137	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3075138	3075215	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3075216	3075321	1	+	0	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3075216	3075321	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3075322	3075406	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3075407	3075498	1	+	2	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3075407	3075498	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3075499	3075598	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3075599	3075667	1	+	0	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3075599	3075667	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3075668	3075748	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3075749	3075844	0.99	+	0	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3075749	3075844	.	+	.	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	stop_codon	3075845	3075847	.	+	0	transcript_id "Ledus.S2G041500.t1"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	transcript	3073630	3075844	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	start_codon	3073630	3073632	.	+	0	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3073630	3073692	0.56	+	0	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3073630	3073692	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3073693	3073926	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3073927	3074096	1	+	0	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3073927	3074096	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3074097	3074189	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3074190	3074226	0.56	+	1	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3074190	3074226	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3074227	3074303	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3074304	3074647	0.57	+	0	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3074304	3074647	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3074648	3074740	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3074741	3075137	1	+	1	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3074741	3075137	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3075138	3075215	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3075216	3075321	1	+	0	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3075216	3075321	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3075322	3075406	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3075407	3075498	1	+	2	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3075407	3075498	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3075499	3075598	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3075599	3075667	1	+	0	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3075599	3075667	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	intron	3075668	3075748	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	CDS	3075749	3075844	0.99	+	0	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	exon	3075749	3075844	.	+	.	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
Ledus.S2	AUGUSTUS	stop_codon	3075845	3075847	.	+	0	transcript_id "Ledus.S2G041500.t2"; gene_id "Ledus.S2G041500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1731.t1 is derived from g8592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12216875	12218971	.	-	.	Ledus.S2G161300
Ledus.S2	AUGUSTUS	transcript	12216875	12218077	.	-	.	transcript_id "Ledus.S2G161300.t1"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	stop_codon	12216872	12216874	.	-	0	transcript_id "Ledus.S2G161300.t1"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	CDS	12216875	12217058	0.92	-	1	transcript_id "Ledus.S2G161300.t1"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	exon	12216875	12217058	.	-	.	transcript_id "Ledus.S2G161300.t1"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	intron	12217059	12217219	.	-	.	transcript_id "Ledus.S2G161300.t1"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	CDS	12217220	12217550	0.99	-	2	transcript_id "Ledus.S2G161300.t1"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	exon	12217220	12217550	.	-	.	transcript_id "Ledus.S2G161300.t1"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	intron	12217551	12217782	.	-	.	transcript_id "Ledus.S2G161300.t1"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	CDS	12217783	12218077	0.46	-	0	transcript_id "Ledus.S2G161300.t1"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	exon	12217783	12218077	.	-	.	transcript_id "Ledus.S2G161300.t1"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	start_codon	12218075	12218077	.	-	0	transcript_id "Ledus.S2G161300.t1"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	transcript	12216875	12218971	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	stop_codon	12216872	12216874	.	-	0	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	CDS	12216875	12217058	0.92	-	1	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	exon	12216875	12217058	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	intron	12217059	12217219	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	CDS	12217220	12217550	1	-	2	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	exon	12217220	12217550	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	intron	12217551	12217782	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	CDS	12217783	12218088	0.69	-	2	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	exon	12217783	12218088	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	intron	12218089	12218315	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	CDS	12218316	12218460	0.71	-	0	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	exon	12218316	12218460	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	intron	12218461	12218631	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	CDS	12218632	12218657	0.94	-	2	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	exon	12218632	12218657	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	intron	12218658	12218775	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	CDS	12218776	12218804	0.66	-	1	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	exon	12218776	12218804	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	intron	12218805	12218966	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	CDS	12218967	12218971	0.99	-	0	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	exon	12218967	12218971	.	-	.	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
Ledus.S2	AUGUSTUS	start_codon	12218969	12218971	.	-	0	transcript_id "Ledus.S2G161300.t2"; gene_id "Ledus.S2G161300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12707.t1 is derived from g6329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14001597	14009088	.	+	.	Ledus.S4G186300
Ledus.S4	AUGUSTUS	transcript	14001597	14009088	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	start_codon	14001597	14001599	.	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14001597	14001727	0.65	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14001597	14001727	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14001728	14001840	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14001841	14002204	0.98	+	1	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14001841	14002204	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14002205	14002301	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14002302	14002444	1	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14002302	14002444	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14002445	14002637	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14002638	14002704	1	+	1	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14002638	14002704	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14002705	14002787	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14002788	14002987	1	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14002788	14002987	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14002988	14003143	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14003144	14003297	1	+	1	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14003144	14003297	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14003298	14003444	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14003445	14003529	1	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14003445	14003529	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14003530	14003679	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14003680	14003771	1	+	2	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14003680	14003771	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14003772	14003929	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14003930	14004058	1	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14003930	14004058	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14004059	14004189	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14004190	14004243	1	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14004190	14004243	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14004244	14004333	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14004334	14004402	1	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14004334	14004402	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14004403	14004505	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14004506	14004603	1	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14004506	14004603	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14004604	14004784	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14004785	14005120	1	+	1	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14004785	14005120	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14005121	14005277	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14005278	14005365	1	+	1	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14005278	14005365	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14005366	14005512	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14005513	14005638	1	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14005513	14005638	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14005639	14005723	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14005724	14005780	1	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14005724	14005780	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14005781	14005907	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14005908	14005987	0.99	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14005908	14005987	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14005988	14006203	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14006204	14006246	1	+	1	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14006204	14006246	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14006247	14006493	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14006494	14006580	1	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14006494	14006580	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14006581	14006750	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14006751	14006801	0.55	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14006751	14006801	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14006802	14006943	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14006944	14007002	1	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14006944	14007002	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14007003	14007098	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14007099	14007189	1	+	1	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14007099	14007189	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14007190	14007361	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14007362	14007530	1	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14007362	14007530	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14007531	14007611	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14007612	14007786	1	+	2	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14007612	14007786	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	intron	14007787	14007920	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	CDS	14007921	14009088	0.97	+	1	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	exon	14007921	14009088	.	+	.	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
Ledus.S4	AUGUSTUS	stop_codon	14009089	14009091	.	+	0	transcript_id "Ledus.S4G186300.t1"; gene_id "Ledus.S4G186300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7427.t1 is derived from g12098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2445481	2449401	.	-	.	Ledus.S5G020500
Ledus.S5	AUGUSTUS	transcript	2445481	2449401	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	stop_codon	2445478	2445480	.	-	0	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	CDS	2445481	2446320	0.96	-	0	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	exon	2445481	2446320	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	intron	2446321	2446531	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	CDS	2446532	2446601	1	-	1	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	exon	2446532	2446601	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	intron	2446602	2446743	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	CDS	2446744	2446874	1	-	0	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	exon	2446744	2446874	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	intron	2446875	2447056	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	CDS	2447057	2447103	1	-	2	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	exon	2447057	2447103	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	intron	2447104	2447274	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	CDS	2447275	2447351	1	-	1	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	exon	2447275	2447351	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	intron	2447352	2447449	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	CDS	2447450	2447514	1	-	0	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	exon	2447450	2447514	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	intron	2447515	2447629	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	CDS	2447630	2447716	1	-	0	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	exon	2447630	2447716	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	intron	2447717	2447967	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	CDS	2447968	2448144	1	-	0	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	exon	2447968	2448144	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	intron	2448145	2448259	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	CDS	2448260	2448325	1	-	0	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	exon	2448260	2448325	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	intron	2448326	2448421	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	CDS	2448422	2448478	1	-	0	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	exon	2448422	2448478	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	intron	2448479	2448581	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	CDS	2448582	2448683	0.96	-	0	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	exon	2448582	2448683	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	intron	2448684	2448819	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	CDS	2448820	2449401	0.37	-	0	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	exon	2448820	2449401	.	-	.	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
Ledus.S5	AUGUSTUS	start_codon	2449399	2449401	.	-	0	transcript_id "Ledus.S5G020500.t1"; gene_id "Ledus.S5G020500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4943.t1 is derived from g2381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20817801	20818631	.	+	.	Ledus.S1G236400
Ledus.S1	AUGUSTUS	transcript	20817801	20818631	.	+	.	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	start_codon	20817801	20817803	.	+	0	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	CDS	20817801	20817837	1	+	0	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	exon	20817801	20817837	.	+	.	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	intron	20817838	20817921	.	+	.	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	CDS	20817922	20817977	1	+	2	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	exon	20817922	20817977	.	+	.	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	intron	20817978	20818129	.	+	.	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	CDS	20818130	20818182	1	+	0	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	exon	20818130	20818182	.	+	.	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	intron	20818183	20818298	.	+	.	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	CDS	20818299	20818417	0.96	+	1	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	exon	20818299	20818417	.	+	.	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	intron	20818418	20818527	.	+	.	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	CDS	20818528	20818631	0.68	+	2	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	exon	20818528	20818631	.	+	.	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
Ledus.S1	AUGUSTUS	stop_codon	20818632	20818634	.	+	0	transcript_id "Ledus.S1G236400.t1"; gene_id "Ledus.S1G236400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3059.t1 is derived from g494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5591959	5592898	.	+	.	Ledus.S1G048000
Ledus.S1	AUGUSTUS	transcript	5591959	5592898	.	+	.	transcript_id "Ledus.S1G048000.t1"; gene_id "Ledus.S1G048000"
Ledus.S1	AUGUSTUS	start_codon	5591959	5591961	.	+	0	transcript_id "Ledus.S1G048000.t1"; gene_id "Ledus.S1G048000"
Ledus.S1	AUGUSTUS	CDS	5591959	5592298	0.12	+	0	transcript_id "Ledus.S1G048000.t1"; gene_id "Ledus.S1G048000"
Ledus.S1	AUGUSTUS	exon	5591959	5592298	.	+	.	transcript_id "Ledus.S1G048000.t1"; gene_id "Ledus.S1G048000"
Ledus.S1	AUGUSTUS	intron	5592299	5592438	.	+	.	transcript_id "Ledus.S1G048000.t1"; gene_id "Ledus.S1G048000"
Ledus.S1	AUGUSTUS	CDS	5592439	5592573	0.39	+	2	transcript_id "Ledus.S1G048000.t1"; gene_id "Ledus.S1G048000"
Ledus.S1	AUGUSTUS	exon	5592439	5592573	.	+	.	transcript_id "Ledus.S1G048000.t1"; gene_id "Ledus.S1G048000"
Ledus.S1	AUGUSTUS	intron	5592574	5592896	.	+	.	transcript_id "Ledus.S1G048000.t1"; gene_id "Ledus.S1G048000"
Ledus.S1	AUGUSTUS	CDS	5592897	5592898	0.65	+	2	transcript_id "Ledus.S1G048000.t1"; gene_id "Ledus.S1G048000"
Ledus.S1	AUGUSTUS	exon	5592897	5592898	.	+	.	transcript_id "Ledus.S1G048000.t1"; gene_id "Ledus.S1G048000"
Ledus.S1	AUGUSTUS	stop_codon	5592899	5592901	.	+	0	transcript_id "Ledus.S1G048000.t1"; gene_id "Ledus.S1G048000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2215.t1 is derived from g9078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16112326	16112538	.	-	.	Ledus.S2G209700
Ledus.S2	AUGUSTUS	transcript	16112326	16112538	.	-	.	transcript_id "Ledus.S2G209700.t1"; gene_id "Ledus.S2G209700"
Ledus.S2	AUGUSTUS	stop_codon	16112323	16112325	.	-	0	transcript_id "Ledus.S2G209700.t1"; gene_id "Ledus.S2G209700"
Ledus.S2	AUGUSTUS	CDS	16112326	16112538	0.44	-	0	transcript_id "Ledus.S2G209700.t1"; gene_id "Ledus.S2G209700"
Ledus.S2	AUGUSTUS	exon	16112326	16112538	.	-	.	transcript_id "Ledus.S2G209700.t1"; gene_id "Ledus.S2G209700"
Ledus.S2	AUGUSTUS	start_codon	16112536	16112538	.	-	0	transcript_id "Ledus.S2G209700.t1"; gene_id "Ledus.S2G209700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7563.t1 is derived from g12234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4067335	4069169	.	+	.	Ledus.S5G034100
Ledus.S5	AUGUSTUS	transcript	4067335	4069169	.	+	.	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	start_codon	4067335	4067337	.	+	0	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	CDS	4067335	4067406	0.91	+	0	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	exon	4067335	4067406	.	+	.	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	intron	4067407	4067824	.	+	.	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	CDS	4067825	4067994	1	+	0	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	exon	4067825	4067994	.	+	.	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	intron	4067995	4068193	.	+	.	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	CDS	4068194	4068383	1	+	1	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	exon	4068194	4068383	.	+	.	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	intron	4068384	4068588	.	+	.	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	CDS	4068589	4068695	1	+	0	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	exon	4068589	4068695	.	+	.	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	intron	4068696	4069096	.	+	.	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	CDS	4069097	4069169	1	+	1	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	exon	4069097	4069169	.	+	.	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	stop_codon	4069170	4069172	.	+	0	transcript_id "Ledus.S5G034100.t1"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	transcript	4067335	4069169	.	+	.	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	start_codon	4067335	4067337	.	+	0	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	CDS	4067335	4067406	0.87	+	0	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	exon	4067335	4067406	.	+	.	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	intron	4067407	4067824	.	+	.	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	CDS	4067825	4067994	1	+	0	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	exon	4067825	4067994	.	+	.	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	intron	4067995	4068193	.	+	.	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	CDS	4068194	4068377	1	+	1	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	exon	4068194	4068377	.	+	.	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	intron	4068378	4068588	.	+	.	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	CDS	4068589	4068695	1	+	0	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	exon	4068589	4068695	.	+	.	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	intron	4068696	4069096	.	+	.	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	CDS	4069097	4069169	1	+	1	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	exon	4069097	4069169	.	+	.	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
Ledus.S5	AUGUSTUS	stop_codon	4069170	4069172	.	+	0	transcript_id "Ledus.S5G034100.t2"; gene_id "Ledus.S5G034100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12854.t1 is derived from g11888.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	235688	239510	.	+	.	Ledus.C11G001800
Ledus.C11	AUGUSTUS	transcript	235688	239510	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	start_codon	235688	235690	.	+	0	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	235688	235716	0.59	+	0	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	235688	235716	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	235717	235981	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	235982	236038	0.51	+	1	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	235982	236038	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	236039	236120	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	236121	236564	0.4	+	1	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	236121	236564	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	236565	236690	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	236691	237654	0.94	+	1	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	236691	237654	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	237655	237778	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	237779	237859	1	+	0	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	237779	237859	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	237860	238500	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	238501	238704	0.95	+	0	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	238501	238704	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	238705	238786	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	238787	238881	1	+	0	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	238787	238881	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	238882	239006	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	239007	239103	1	+	1	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	239007	239103	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	239104	239263	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	239264	239365	1	+	0	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	239264	239365	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	239366	239453	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	239454	239510	1	+	0	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	239454	239510	.	+	.	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	stop_codon	239511	239513	.	+	0	transcript_id "Ledus.C11G001800.t1"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	transcript	235688	239510	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	start_codon	235688	235690	.	+	0	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	235688	235716	0.55	+	0	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	235688	235716	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	235717	235981	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	235982	236038	0.45	+	1	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	235982	236038	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	236039	236120	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	236121	236564	0.41	+	1	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	236121	236564	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	236565	236690	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	236691	237654	0.95	+	1	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	236691	237654	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	237655	237778	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	237779	237859	1	+	0	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	237779	237859	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	237860	238500	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	238501	238704	0.99	+	0	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	238501	238704	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	238705	238795	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	238796	238881	1	+	0	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	238796	238881	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	238882	239006	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	239007	239103	1	+	1	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	239007	239103	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	239104	239263	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	239264	239365	1	+	0	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	239264	239365	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	intron	239366	239453	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	CDS	239454	239510	0.99	+	0	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	exon	239454	239510	.	+	.	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
Ledus.C11	AUGUSTUS	stop_codon	239511	239513	.	+	0	transcript_id "Ledus.C11G001800.t2"; gene_id "Ledus.C11G001800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8816.t1 is derived from g9846.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2117614	2121730	.	-	.	Ledus.S3G029300
Ledus.S3	AUGUSTUS	transcript	2117614	2121730	.	-	.	transcript_id "Ledus.S3G029300.t1"; gene_id "Ledus.S3G029300"
Ledus.S3	AUGUSTUS	stop_codon	2117611	2117613	.	-	0	transcript_id "Ledus.S3G029300.t1"; gene_id "Ledus.S3G029300"
Ledus.S3	AUGUSTUS	CDS	2117614	2120318	1	-	2	transcript_id "Ledus.S3G029300.t1"; gene_id "Ledus.S3G029300"
Ledus.S3	AUGUSTUS	exon	2117614	2120318	.	-	.	transcript_id "Ledus.S3G029300.t1"; gene_id "Ledus.S3G029300"
Ledus.S3	AUGUSTUS	intron	2120319	2120415	.	-	.	transcript_id "Ledus.S3G029300.t1"; gene_id "Ledus.S3G029300"
Ledus.S3	AUGUSTUS	CDS	2120416	2121730	1	-	0	transcript_id "Ledus.S3G029300.t1"; gene_id "Ledus.S3G029300"
Ledus.S3	AUGUSTUS	exon	2120416	2121730	.	-	.	transcript_id "Ledus.S3G029300.t1"; gene_id "Ledus.S3G029300"
Ledus.S3	AUGUSTUS	start_codon	2121728	2121730	.	-	0	transcript_id "Ledus.S3G029300.t1"; gene_id "Ledus.S3G029300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4391.t1 is derived from g1827.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16773525	16775625	.	+	.	Ledus.S1G181200
Ledus.S1	AUGUSTUS	transcript	16773525	16775625	.	+	.	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	start_codon	16773525	16773527	.	+	0	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	CDS	16773525	16773680	0.95	+	0	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	exon	16773525	16773680	.	+	.	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	intron	16773681	16773759	.	+	.	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	CDS	16773760	16773911	1	+	0	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	exon	16773760	16773911	.	+	.	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	intron	16773912	16774000	.	+	.	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	CDS	16774001	16774245	1	+	1	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	exon	16774001	16774245	.	+	.	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	intron	16774246	16774331	.	+	.	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	CDS	16774332	16775408	1	+	2	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	exon	16774332	16775408	.	+	.	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	intron	16775409	16775497	.	+	.	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	CDS	16775498	16775625	1	+	2	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	exon	16775498	16775625	.	+	.	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
Ledus.S1	AUGUSTUS	stop_codon	16775626	16775628	.	+	0	transcript_id "Ledus.S1G181200.t1"; gene_id "Ledus.S1G181200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7848.t1 is derived from g12519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7442234	7443116	.	+	.	Ledus.S5G062600
Ledus.S5	AUGUSTUS	transcript	7442234	7443116	.	+	.	transcript_id "Ledus.S5G062600.t1"; gene_id "Ledus.S5G062600"
Ledus.S5	AUGUSTUS	start_codon	7442234	7442236	.	+	0	transcript_id "Ledus.S5G062600.t1"; gene_id "Ledus.S5G062600"
Ledus.S5	AUGUSTUS	CDS	7442234	7442357	0.78	+	0	transcript_id "Ledus.S5G062600.t1"; gene_id "Ledus.S5G062600"
Ledus.S5	AUGUSTUS	exon	7442234	7442357	.	+	.	transcript_id "Ledus.S5G062600.t1"; gene_id "Ledus.S5G062600"
Ledus.S5	AUGUSTUS	intron	7442358	7442712	.	+	.	transcript_id "Ledus.S5G062600.t1"; gene_id "Ledus.S5G062600"
Ledus.S5	AUGUSTUS	CDS	7442713	7443116	0.66	+	2	transcript_id "Ledus.S5G062600.t1"; gene_id "Ledus.S5G062600"
Ledus.S5	AUGUSTUS	exon	7442713	7443116	.	+	.	transcript_id "Ledus.S5G062600.t1"; gene_id "Ledus.S5G062600"
Ledus.S5	AUGUSTUS	stop_codon	7443117	7443119	.	+	0	transcript_id "Ledus.S5G062600.t1"; gene_id "Ledus.S5G062600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7655.t1 is derived from g12326.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4827898	4828779	.	-	.	Ledus.S5G043300
Ledus.S5	AUGUSTUS	transcript	4827898	4828779	.	-	.	transcript_id "Ledus.S5G043300.t1"; gene_id "Ledus.S5G043300"
Ledus.S5	AUGUSTUS	stop_codon	4827895	4827897	.	-	0	transcript_id "Ledus.S5G043300.t1"; gene_id "Ledus.S5G043300"
Ledus.S5	AUGUSTUS	CDS	4827898	4828096	0.94	-	1	transcript_id "Ledus.S5G043300.t1"; gene_id "Ledus.S5G043300"
Ledus.S5	AUGUSTUS	exon	4827898	4828096	.	-	.	transcript_id "Ledus.S5G043300.t1"; gene_id "Ledus.S5G043300"
Ledus.S5	AUGUSTUS	intron	4828097	4828225	.	-	.	transcript_id "Ledus.S5G043300.t1"; gene_id "Ledus.S5G043300"
Ledus.S5	AUGUSTUS	CDS	4828226	4828329	0.86	-	0	transcript_id "Ledus.S5G043300.t1"; gene_id "Ledus.S5G043300"
Ledus.S5	AUGUSTUS	exon	4828226	4828329	.	-	.	transcript_id "Ledus.S5G043300.t1"; gene_id "Ledus.S5G043300"
Ledus.S5	AUGUSTUS	intron	4828330	4828671	.	-	.	transcript_id "Ledus.S5G043300.t1"; gene_id "Ledus.S5G043300"
Ledus.S5	AUGUSTUS	CDS	4828672	4828779	0.58	-	0	transcript_id "Ledus.S5G043300.t1"; gene_id "Ledus.S5G043300"
Ledus.S5	AUGUSTUS	exon	4828672	4828779	.	-	.	transcript_id "Ledus.S5G043300.t1"; gene_id "Ledus.S5G043300"
Ledus.S5	AUGUSTUS	start_codon	4828777	4828779	.	-	0	transcript_id "Ledus.S5G043300.t1"; gene_id "Ledus.S5G043300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg834.t1 is derived from g7695.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5524422	5525432	.	+	.	Ledus.S2G071600
Ledus.S2	AUGUSTUS	transcript	5524422	5525432	.	+	.	transcript_id "Ledus.S2G071600.t1"; gene_id "Ledus.S2G071600"
Ledus.S2	AUGUSTUS	start_codon	5524422	5524424	.	+	0	transcript_id "Ledus.S2G071600.t1"; gene_id "Ledus.S2G071600"
Ledus.S2	AUGUSTUS	CDS	5524422	5525432	0.94	+	0	transcript_id "Ledus.S2G071600.t1"; gene_id "Ledus.S2G071600"
Ledus.S2	AUGUSTUS	exon	5524422	5525432	.	+	.	transcript_id "Ledus.S2G071600.t1"; gene_id "Ledus.S2G071600"
Ledus.S2	AUGUSTUS	stop_codon	5525433	5525435	.	+	0	transcript_id "Ledus.S2G071600.t1"; gene_id "Ledus.S2G071600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11176.t1 is derived from g4794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2400351	2402548	.	-	.	Ledus.S4G033200
Ledus.S4	AUGUSTUS	transcript	2400351	2402548	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	stop_codon	2400348	2400350	.	-	0	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	CDS	2400351	2400448	0.33	-	2	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	exon	2400351	2400448	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	intron	2400449	2400552	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	CDS	2400553	2400656	0.38	-	1	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	exon	2400553	2400656	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	intron	2400657	2400787	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	CDS	2400788	2400874	1	-	1	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	exon	2400788	2400874	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	intron	2400875	2400952	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	CDS	2400953	2401014	1	-	0	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	exon	2400953	2401014	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	intron	2401015	2401136	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	CDS	2401137	2401215	1	-	1	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	exon	2401137	2401215	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	intron	2401216	2401405	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	CDS	2401406	2401604	1	-	2	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	exon	2401406	2401604	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	intron	2401605	2401748	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	CDS	2401749	2401902	1	-	0	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	exon	2401749	2401902	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	intron	2401903	2402093	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	CDS	2402094	2402186	0.99	-	0	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	exon	2402094	2402186	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	intron	2402187	2402302	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	CDS	2402303	2402548	0.99	-	0	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	exon	2402303	2402548	.	-	.	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
Ledus.S4	AUGUSTUS	start_codon	2402546	2402548	.	-	0	transcript_id "Ledus.S4G033200.t1"; gene_id "Ledus.S4G033200"
# This transcript jg7990.t2 is derived from g12661.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7991.t1 is derived from g12662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8375285	8377288	.	+	.	Ledus.S5G076900
Ledus.S5	AUGUSTUS	transcript	8375633	8377288	.	+	.	transcript_id "Ledus.S5G076900.t1"; gene_id "Ledus.S5G076900"
Ledus.S5	AUGUSTUS	start_codon	8375633	8375635	.	+	0	transcript_id "Ledus.S5G076900.t1"; gene_id "Ledus.S5G076900"
Ledus.S5	AUGUSTUS	CDS	8375633	8377288	0.99	+	0	transcript_id "Ledus.S5G076900.t1"; gene_id "Ledus.S5G076900"
Ledus.S5	AUGUSTUS	exon	8375633	8377288	.	+	.	transcript_id "Ledus.S5G076900.t1"; gene_id "Ledus.S5G076900"
Ledus.S5	AUGUSTUS	stop_codon	8377289	8377291	.	+	0	transcript_id "Ledus.S5G076900.t1"; gene_id "Ledus.S5G076900"
Ledus.S5	AUGUSTUS	transcript	8375285	8377288	.	+	.	transcript_id "Ledus.S5G076900.t2"; gene_id "Ledus.S5G076900"
Ledus.S5	AUGUSTUS	start_codon	8375285	8375287	.	+	0	transcript_id "Ledus.S5G076900.t2"; gene_id "Ledus.S5G076900"
Ledus.S5	AUGUSTUS	CDS	8375285	8377288	0.63	+	0	transcript_id "Ledus.S5G076900.t2"; gene_id "Ledus.S5G076900"
Ledus.S5	AUGUSTUS	exon	8375285	8377288	.	+	.	transcript_id "Ledus.S5G076900.t2"; gene_id "Ledus.S5G076900"
Ledus.S5	AUGUSTUS	stop_codon	8377289	8377291	.	+	0	transcript_id "Ledus.S5G076900.t2"; gene_id "Ledus.S5G076900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6991.t1 is derived from g6522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	602088	602591	.	+	.	Ledus.C7G005200
Ledus.C7	AUGUSTUS	transcript	602088	602591	.	+	.	transcript_id "Ledus.C7G005200.t1"; gene_id "Ledus.C7G005200"
Ledus.C7	AUGUSTUS	start_codon	602088	602090	.	+	0	transcript_id "Ledus.C7G005200.t1"; gene_id "Ledus.C7G005200"
Ledus.C7	AUGUSTUS	CDS	602088	602591	1	+	0	transcript_id "Ledus.C7G005200.t1"; gene_id "Ledus.C7G005200"
Ledus.C7	AUGUSTUS	exon	602088	602591	.	+	.	transcript_id "Ledus.C7G005200.t1"; gene_id "Ledus.C7G005200"
Ledus.C7	AUGUSTUS	stop_codon	602592	602594	.	+	0	transcript_id "Ledus.C7G005200.t1"; gene_id "Ledus.C7G005200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4728.t1 is derived from g2166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19273241	19273976	.	+	.	Ledus.S1G214900
Ledus.S1	AUGUSTUS	transcript	19273241	19273976	.	+	.	transcript_id "Ledus.S1G214900.t1"; gene_id "Ledus.S1G214900"
Ledus.S1	AUGUSTUS	start_codon	19273241	19273243	.	+	0	transcript_id "Ledus.S1G214900.t1"; gene_id "Ledus.S1G214900"
Ledus.S1	AUGUSTUS	CDS	19273241	19273336	0.89	+	0	transcript_id "Ledus.S1G214900.t1"; gene_id "Ledus.S1G214900"
Ledus.S1	AUGUSTUS	exon	19273241	19273336	.	+	.	transcript_id "Ledus.S1G214900.t1"; gene_id "Ledus.S1G214900"
Ledus.S1	AUGUSTUS	intron	19273337	19273443	.	+	.	transcript_id "Ledus.S1G214900.t1"; gene_id "Ledus.S1G214900"
Ledus.S1	AUGUSTUS	CDS	19273444	19273626	0.63	+	0	transcript_id "Ledus.S1G214900.t1"; gene_id "Ledus.S1G214900"
Ledus.S1	AUGUSTUS	exon	19273444	19273626	.	+	.	transcript_id "Ledus.S1G214900.t1"; gene_id "Ledus.S1G214900"
Ledus.S1	AUGUSTUS	intron	19273627	19273757	.	+	.	transcript_id "Ledus.S1G214900.t1"; gene_id "Ledus.S1G214900"
Ledus.S1	AUGUSTUS	CDS	19273758	19273976	0.93	+	0	transcript_id "Ledus.S1G214900.t1"; gene_id "Ledus.S1G214900"
Ledus.S1	AUGUSTUS	exon	19273758	19273976	.	+	.	transcript_id "Ledus.S1G214900.t1"; gene_id "Ledus.S1G214900"
Ledus.S1	AUGUSTUS	stop_codon	19273977	19273979	.	+	0	transcript_id "Ledus.S1G214900.t1"; gene_id "Ledus.S1G214900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2672.t1 is derived from g105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1580753	1582201	.	-	.	Ledus.S1G009300
Ledus.S1	AUGUSTUS	transcript	1580753	1582201	.	-	.	transcript_id "Ledus.S1G009300.t1"; gene_id "Ledus.S1G009300"
Ledus.S1	AUGUSTUS	stop_codon	1580750	1580752	.	-	0	transcript_id "Ledus.S1G009300.t1"; gene_id "Ledus.S1G009300"
Ledus.S1	AUGUSTUS	CDS	1580753	1581634	1	-	0	transcript_id "Ledus.S1G009300.t1"; gene_id "Ledus.S1G009300"
Ledus.S1	AUGUSTUS	exon	1580753	1581634	.	-	.	transcript_id "Ledus.S1G009300.t1"; gene_id "Ledus.S1G009300"
Ledus.S1	AUGUSTUS	intron	1581635	1581739	.	-	.	transcript_id "Ledus.S1G009300.t1"; gene_id "Ledus.S1G009300"
Ledus.S1	AUGUSTUS	CDS	1581740	1582201	0.85	-	0	transcript_id "Ledus.S1G009300.t1"; gene_id "Ledus.S1G009300"
Ledus.S1	AUGUSTUS	exon	1581740	1582201	.	-	.	transcript_id "Ledus.S1G009300.t1"; gene_id "Ledus.S1G009300"
Ledus.S1	AUGUSTUS	start_codon	1582199	1582201	.	-	0	transcript_id "Ledus.S1G009300.t1"; gene_id "Ledus.S1G009300"
# This transcript jg10329.t2 is derived from g11359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10330.t1 is derived from g11360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14245383	14247349	.	+	.	Ledus.S3G180700
Ledus.S3	AUGUSTUS	transcript	14245383	14247349	.	+	.	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	start_codon	14245383	14245385	.	+	0	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	CDS	14245383	14246078	0.95	+	0	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	exon	14245383	14246078	.	+	.	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	intron	14246079	14246163	.	+	.	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	CDS	14246164	14246222	1	+	0	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	exon	14246164	14246222	.	+	.	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	intron	14246223	14246405	.	+	.	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	CDS	14246406	14246534	0.96	+	1	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	exon	14246406	14246534	.	+	.	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	intron	14246535	14246638	.	+	.	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	CDS	14246639	14246774	1	+	1	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	exon	14246639	14246774	.	+	.	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	intron	14246775	14246857	.	+	.	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	CDS	14246858	14247349	1	+	0	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	exon	14246858	14247349	.	+	.	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
Ledus.S3	AUGUSTUS	stop_codon	14247350	14247352	.	+	0	transcript_id "Ledus.S3G180700.t1"; gene_id "Ledus.S3G180700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2959.t1 is derived from g394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4915428	4916687	.	-	.	Ledus.S1G038000
Ledus.S1	AUGUSTUS	transcript	4915428	4916687	.	-	.	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	stop_codon	4915425	4915427	.	-	0	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	CDS	4915428	4915460	1	-	0	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	exon	4915428	4915460	.	-	.	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	intron	4915461	4915611	.	-	.	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	CDS	4915612	4915715	1	-	2	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	exon	4915612	4915715	.	-	.	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	intron	4915716	4915916	.	-	.	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	CDS	4915917	4915981	1	-	1	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	exon	4915917	4915981	.	-	.	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	intron	4915982	4916082	.	-	.	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	CDS	4916083	4916218	1	-	2	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	exon	4916083	4916218	.	-	.	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	intron	4916219	4916446	.	-	.	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	CDS	4916447	4916492	1	-	0	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	exon	4916447	4916492	.	-	.	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	intron	4916493	4916597	.	-	.	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	CDS	4916598	4916687	1	-	0	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	exon	4916598	4916687	.	-	.	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
Ledus.S1	AUGUSTUS	start_codon	4916685	4916687	.	-	0	transcript_id "Ledus.S1G038000.t1"; gene_id "Ledus.S1G038000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9947.t1 is derived from g10977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11431255	11432610	.	-	.	Ledus.S3G142400
Ledus.S3	AUGUSTUS	transcript	11431255	11432610	.	-	.	transcript_id "Ledus.S3G142400.t1"; gene_id "Ledus.S3G142400"
Ledus.S3	AUGUSTUS	stop_codon	11431252	11431254	.	-	0	transcript_id "Ledus.S3G142400.t1"; gene_id "Ledus.S3G142400"
Ledus.S3	AUGUSTUS	CDS	11431255	11431559	0.97	-	2	transcript_id "Ledus.S3G142400.t1"; gene_id "Ledus.S3G142400"
Ledus.S3	AUGUSTUS	exon	11431255	11431559	.	-	.	transcript_id "Ledus.S3G142400.t1"; gene_id "Ledus.S3G142400"
Ledus.S3	AUGUSTUS	intron	11431560	11432052	.	-	.	transcript_id "Ledus.S3G142400.t1"; gene_id "Ledus.S3G142400"
Ledus.S3	AUGUSTUS	CDS	11432053	11432179	0.85	-	0	transcript_id "Ledus.S3G142400.t1"; gene_id "Ledus.S3G142400"
Ledus.S3	AUGUSTUS	exon	11432053	11432179	.	-	.	transcript_id "Ledus.S3G142400.t1"; gene_id "Ledus.S3G142400"
Ledus.S3	AUGUSTUS	intron	11432180	11432307	.	-	.	transcript_id "Ledus.S3G142400.t1"; gene_id "Ledus.S3G142400"
Ledus.S3	AUGUSTUS	CDS	11432308	11432610	0.59	-	0	transcript_id "Ledus.S3G142400.t1"; gene_id "Ledus.S3G142400"
Ledus.S3	AUGUSTUS	exon	11432308	11432610	.	-	.	transcript_id "Ledus.S3G142400.t1"; gene_id "Ledus.S3G142400"
Ledus.S3	AUGUSTUS	start_codon	11432608	11432610	.	-	0	transcript_id "Ledus.S3G142400.t1"; gene_id "Ledus.S3G142400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6432.t1 is derived from g3875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31215226	31218021	.	-	.	Ledus.S1G385300
Ledus.S1	AUGUSTUS	transcript	31215226	31218021	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	stop_codon	31215223	31215225	.	-	0	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	CDS	31215226	31215339	0.82	-	0	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	exon	31215226	31215339	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	intron	31215340	31215439	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	CDS	31215440	31215601	1	-	0	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	exon	31215440	31215601	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	intron	31215602	31215671	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	CDS	31215672	31215767	1	-	0	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	exon	31215672	31215767	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	intron	31215768	31215853	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	CDS	31215854	31215915	1	-	2	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	exon	31215854	31215915	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	intron	31215916	31216007	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	CDS	31216008	31216083	1	-	0	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	exon	31216008	31216083	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	intron	31216084	31216199	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	CDS	31216200	31216282	1	-	2	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	exon	31216200	31216282	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	intron	31216283	31216435	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	CDS	31216436	31216761	1	-	1	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	exon	31216436	31216761	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	intron	31216762	31216857	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	CDS	31216858	31216904	1	-	0	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	exon	31216858	31216904	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	intron	31216905	31217012	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	CDS	31217013	31217149	0.97	-	2	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	exon	31217013	31217149	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	intron	31217150	31217351	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	CDS	31217352	31217405	0.76	-	2	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	exon	31217352	31217405	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	intron	31217406	31217529	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	CDS	31217530	31217556	0.63	-	2	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	exon	31217530	31217556	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	intron	31217557	31217831	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	CDS	31217832	31218021	0.38	-	0	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	exon	31217832	31218021	.	-	.	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
Ledus.S1	AUGUSTUS	start_codon	31218019	31218021	.	-	0	transcript_id "Ledus.S1G385300.t1"; gene_id "Ledus.S1G385300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg186.t1 is derived from g7047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	613172	615638	.	-	.	Ledus.S2G006800
Ledus.S2	AUGUSTUS	transcript	613172	615638	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	stop_codon	613169	613171	.	-	0	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	CDS	613172	613779	1	-	2	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	exon	613172	613779	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	intron	613780	613854	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	CDS	613855	613932	0.54	-	2	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	exon	613855	613932	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	intron	613933	614158	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	CDS	614159	614598	0.75	-	1	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	exon	614159	614598	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	intron	614599	614667	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	CDS	614668	614825	1	-	0	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	exon	614668	614825	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	intron	614826	614911	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	CDS	614912	614986	1	-	0	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	exon	614912	614986	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	intron	614987	615048	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	CDS	615049	615123	1	-	0	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	exon	615049	615123	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	intron	615124	615217	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	CDS	615218	615266	0.98	-	1	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	exon	615218	615266	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	intron	615267	615382	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	CDS	615383	615403	0.99	-	1	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	exon	615383	615403	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	intron	615404	615492	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	CDS	615493	615638	0.99	-	0	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	exon	615493	615638	.	-	.	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
Ledus.S2	AUGUSTUS	start_codon	615636	615638	.	-	0	transcript_id "Ledus.S2G006800.t1"; gene_id "Ledus.S2G006800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6368.t1 is derived from g3811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30797897	30798357	.	+	.	Ledus.S1G378900
Ledus.S1	AUGUSTUS	transcript	30797897	30798357	.	+	.	transcript_id "Ledus.S1G378900.t1"; gene_id "Ledus.S1G378900"
Ledus.S1	AUGUSTUS	start_codon	30797897	30797899	.	+	0	transcript_id "Ledus.S1G378900.t1"; gene_id "Ledus.S1G378900"
Ledus.S1	AUGUSTUS	CDS	30797897	30797934	0.78	+	0	transcript_id "Ledus.S1G378900.t1"; gene_id "Ledus.S1G378900"
Ledus.S1	AUGUSTUS	exon	30797897	30797934	.	+	.	transcript_id "Ledus.S1G378900.t1"; gene_id "Ledus.S1G378900"
Ledus.S1	AUGUSTUS	intron	30797935	30798020	.	+	.	transcript_id "Ledus.S1G378900.t1"; gene_id "Ledus.S1G378900"
Ledus.S1	AUGUSTUS	CDS	30798021	30798156	0.99	+	1	transcript_id "Ledus.S1G378900.t1"; gene_id "Ledus.S1G378900"
Ledus.S1	AUGUSTUS	exon	30798021	30798156	.	+	.	transcript_id "Ledus.S1G378900.t1"; gene_id "Ledus.S1G378900"
Ledus.S1	AUGUSTUS	intron	30798157	30798249	.	+	.	transcript_id "Ledus.S1G378900.t1"; gene_id "Ledus.S1G378900"
Ledus.S1	AUGUSTUS	CDS	30798250	30798357	0.97	+	0	transcript_id "Ledus.S1G378900.t1"; gene_id "Ledus.S1G378900"
Ledus.S1	AUGUSTUS	exon	30798250	30798357	.	+	.	transcript_id "Ledus.S1G378900.t1"; gene_id "Ledus.S1G378900"
Ledus.S1	AUGUSTUS	stop_codon	30798358	30798360	.	+	0	transcript_id "Ledus.S1G378900.t1"; gene_id "Ledus.S1G378900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2666.t1 is derived from g99.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1469634	1470091	.	+	.	Ledus.S1G008700
Ledus.S1	AUGUSTUS	transcript	1469634	1470091	.	+	.	transcript_id "Ledus.S1G008700.t1"; gene_id "Ledus.S1G008700"
Ledus.S1	AUGUSTUS	start_codon	1469634	1469636	.	+	0	transcript_id "Ledus.S1G008700.t1"; gene_id "Ledus.S1G008700"
Ledus.S1	AUGUSTUS	CDS	1469634	1469707	0.31	+	0	transcript_id "Ledus.S1G008700.t1"; gene_id "Ledus.S1G008700"
Ledus.S1	AUGUSTUS	exon	1469634	1469707	.	+	.	transcript_id "Ledus.S1G008700.t1"; gene_id "Ledus.S1G008700"
Ledus.S1	AUGUSTUS	intron	1469708	1469781	.	+	.	transcript_id "Ledus.S1G008700.t1"; gene_id "Ledus.S1G008700"
Ledus.S1	AUGUSTUS	CDS	1469782	1470091	0.8	+	1	transcript_id "Ledus.S1G008700.t1"; gene_id "Ledus.S1G008700"
Ledus.S1	AUGUSTUS	exon	1469782	1470091	.	+	.	transcript_id "Ledus.S1G008700.t1"; gene_id "Ledus.S1G008700"
Ledus.S1	AUGUSTUS	stop_codon	1470092	1470094	.	+	0	transcript_id "Ledus.S1G008700.t1"; gene_id "Ledus.S1G008700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7353.t1 is derived from g12024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1416799	1417221	.	+	.	Ledus.S5G013100
Ledus.S5	AUGUSTUS	transcript	1416799	1417221	.	+	.	transcript_id "Ledus.S5G013100.t1"; gene_id "Ledus.S5G013100"
Ledus.S5	AUGUSTUS	start_codon	1416799	1416801	.	+	0	transcript_id "Ledus.S5G013100.t1"; gene_id "Ledus.S5G013100"
Ledus.S5	AUGUSTUS	CDS	1416799	1417221	0.56	+	0	transcript_id "Ledus.S5G013100.t1"; gene_id "Ledus.S5G013100"
Ledus.S5	AUGUSTUS	exon	1416799	1417221	.	+	.	transcript_id "Ledus.S5G013100.t1"; gene_id "Ledus.S5G013100"
Ledus.S5	AUGUSTUS	stop_codon	1417222	1417224	.	+	0	transcript_id "Ledus.S5G013100.t1"; gene_id "Ledus.S5G013100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2483.t1 is derived from g9346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18394238	18395846	.	+	.	Ledus.S2G236500
Ledus.S2	AUGUSTUS	transcript	18394238	18395846	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	start_codon	18394238	18394240	.	+	0	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	CDS	18394238	18394274	0.49	+	0	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	exon	18394238	18394274	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	intron	18394275	18394389	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	CDS	18394390	18394542	0.81	+	2	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	exon	18394390	18394542	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	intron	18394543	18394633	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	CDS	18394634	18394779	1	+	2	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	exon	18394634	18394779	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	intron	18394780	18394876	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	CDS	18394877	18394996	1	+	0	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	exon	18394877	18394996	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	intron	18394997	18395173	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	CDS	18395174	18395341	1	+	0	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	exon	18395174	18395341	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	intron	18395342	18395482	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	CDS	18395483	18395572	1	+	0	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	exon	18395483	18395572	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	intron	18395573	18395747	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	CDS	18395748	18395846	1	+	0	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	exon	18395748	18395846	.	+	.	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
Ledus.S2	AUGUSTUS	stop_codon	18395847	18395849	.	+	0	transcript_id "Ledus.S2G236500.t1"; gene_id "Ledus.S2G236500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10444.t1 is derived from g11474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15195616	15197349	.	+	.	Ledus.S3G192100
Ledus.S3	AUGUSTUS	transcript	15195616	15197349	.	+	.	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	start_codon	15195616	15195618	.	+	0	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	CDS	15195616	15195679	1	+	0	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	exon	15195616	15195679	.	+	.	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	intron	15195680	15195841	.	+	.	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	CDS	15195842	15195903	0.96	+	2	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	exon	15195842	15195903	.	+	.	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	intron	15195904	15195975	.	+	.	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	CDS	15195976	15197224	0.96	+	0	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	exon	15195976	15197224	.	+	.	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	intron	15197225	15197320	.	+	.	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	CDS	15197321	15197349	1	+	2	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	exon	15197321	15197349	.	+	.	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
Ledus.S3	AUGUSTUS	stop_codon	15197350	15197352	.	+	0	transcript_id "Ledus.S3G192100.t1"; gene_id "Ledus.S3G192100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6566.t1 is derived from g4009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32424348	32424986	.	-	.	Ledus.S1G398700
Ledus.S1	AUGUSTUS	transcript	32424348	32424986	.	-	.	transcript_id "Ledus.S1G398700.t1"; gene_id "Ledus.S1G398700"
Ledus.S1	AUGUSTUS	stop_codon	32424345	32424347	.	-	0	transcript_id "Ledus.S1G398700.t1"; gene_id "Ledus.S1G398700"
Ledus.S1	AUGUSTUS	CDS	32424348	32424524	0.95	-	0	transcript_id "Ledus.S1G398700.t1"; gene_id "Ledus.S1G398700"
Ledus.S1	AUGUSTUS	exon	32424348	32424524	.	-	.	transcript_id "Ledus.S1G398700.t1"; gene_id "Ledus.S1G398700"
Ledus.S1	AUGUSTUS	intron	32424525	32424854	.	-	.	transcript_id "Ledus.S1G398700.t1"; gene_id "Ledus.S1G398700"
Ledus.S1	AUGUSTUS	CDS	32424855	32424986	0.48	-	0	transcript_id "Ledus.S1G398700.t1"; gene_id "Ledus.S1G398700"
Ledus.S1	AUGUSTUS	exon	32424855	32424986	.	-	.	transcript_id "Ledus.S1G398700.t1"; gene_id "Ledus.S1G398700"
Ledus.S1	AUGUSTUS	start_codon	32424984	32424986	.	-	0	transcript_id "Ledus.S1G398700.t1"; gene_id "Ledus.S1G398700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7611.t1 is derived from g12282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4357325	4357654	.	-	.	Ledus.S5G038900
Ledus.S5	AUGUSTUS	transcript	4357325	4357654	.	-	.	transcript_id "Ledus.S5G038900.t1"; gene_id "Ledus.S5G038900"
Ledus.S5	AUGUSTUS	stop_codon	4357322	4357324	.	-	0	transcript_id "Ledus.S5G038900.t1"; gene_id "Ledus.S5G038900"
Ledus.S5	AUGUSTUS	CDS	4357325	4357654	0.77	-	0	transcript_id "Ledus.S5G038900.t1"; gene_id "Ledus.S5G038900"
Ledus.S5	AUGUSTUS	exon	4357325	4357654	.	-	.	transcript_id "Ledus.S5G038900.t1"; gene_id "Ledus.S5G038900"
Ledus.S5	AUGUSTUS	start_codon	4357652	4357654	.	-	0	transcript_id "Ledus.S5G038900.t1"; gene_id "Ledus.S5G038900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2615.t1 is derived from g48.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	509271	510234	.	-	.	Ledus.S1G003600
Ledus.S1	AUGUSTUS	transcript	509271	510234	.	-	.	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	stop_codon	509268	509270	.	-	0	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	CDS	509271	509325	1	-	1	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	exon	509271	509325	.	-	.	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	intron	509326	509418	.	-	.	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	CDS	509419	509534	1	-	0	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	exon	509419	509534	.	-	.	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	intron	509535	509613	.	-	.	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	CDS	509614	509830	1	-	1	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	exon	509614	509830	.	-	.	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	intron	509831	509947	.	-	.	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	CDS	509948	510234	0.86	-	0	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	exon	509948	510234	.	-	.	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
Ledus.S1	AUGUSTUS	start_codon	510232	510234	.	-	0	transcript_id "Ledus.S1G003600.t1"; gene_id "Ledus.S1G003600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg197.t1 is derived from g7058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	752653	753135	.	-	.	Ledus.S2G007900
Ledus.S2	AUGUSTUS	transcript	752653	753135	.	-	.	transcript_id "Ledus.S2G007900.t1"; gene_id "Ledus.S2G007900"
Ledus.S2	AUGUSTUS	stop_codon	752650	752652	.	-	0	transcript_id "Ledus.S2G007900.t1"; gene_id "Ledus.S2G007900"
Ledus.S2	AUGUSTUS	CDS	752653	753135	1	-	0	transcript_id "Ledus.S2G007900.t1"; gene_id "Ledus.S2G007900"
Ledus.S2	AUGUSTUS	exon	752653	753135	.	-	.	transcript_id "Ledus.S2G007900.t1"; gene_id "Ledus.S2G007900"
Ledus.S2	AUGUSTUS	start_codon	753133	753135	.	-	0	transcript_id "Ledus.S2G007900.t1"; gene_id "Ledus.S2G007900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12742.t1 is derived from g6364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14182183	14182934	.	-	.	Ledus.S4G189800
Ledus.S4	AUGUSTUS	transcript	14182183	14182934	.	-	.	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	stop_codon	14182180	14182182	.	-	0	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	CDS	14182183	14182293	0.57	-	0	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	exon	14182183	14182293	.	-	.	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	intron	14182294	14182375	.	-	.	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	CDS	14182376	14182477	0.67	-	0	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	exon	14182376	14182477	.	-	.	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	intron	14182478	14182566	.	-	.	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	CDS	14182567	14182838	0.58	-	2	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	exon	14182567	14182838	.	-	.	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	intron	14182839	14182912	.	-	.	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	CDS	14182913	14182934	1	-	0	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	exon	14182913	14182934	.	-	.	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	start_codon	14182932	14182934	.	-	0	transcript_id "Ledus.S4G189800.t1"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	transcript	14182407	14182934	.	-	.	transcript_id "Ledus.S4G189800.t2"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	stop_codon	14182404	14182406	.	-	0	transcript_id "Ledus.S4G189800.t2"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	CDS	14182407	14182559	0.71	-	0	transcript_id "Ledus.S4G189800.t2"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	exon	14182407	14182559	.	-	.	transcript_id "Ledus.S4G189800.t2"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	intron	14182560	14182668	.	-	.	transcript_id "Ledus.S4G189800.t2"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	CDS	14182669	14182838	0.33	-	2	transcript_id "Ledus.S4G189800.t2"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	exon	14182669	14182838	.	-	.	transcript_id "Ledus.S4G189800.t2"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	intron	14182839	14182912	.	-	.	transcript_id "Ledus.S4G189800.t2"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	CDS	14182913	14182934	0.99	-	0	transcript_id "Ledus.S4G189800.t2"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	exon	14182913	14182934	.	-	.	transcript_id "Ledus.S4G189800.t2"; gene_id "Ledus.S4G189800"
Ledus.S4	AUGUSTUS	start_codon	14182932	14182934	.	-	0	transcript_id "Ledus.S4G189800.t2"; gene_id "Ledus.S4G189800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4315.t1 is derived from g1751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16177130	16177949	.	-	.	Ledus.S1G173600
Ledus.S1	AUGUSTUS	transcript	16177130	16177949	.	-	.	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	stop_codon	16177127	16177129	.	-	0	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	CDS	16177130	16177146	0.71	-	2	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	exon	16177130	16177146	.	-	.	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	intron	16177147	16177320	.	-	.	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	CDS	16177321	16177341	0.64	-	2	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	exon	16177321	16177341	.	-	.	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	intron	16177342	16177439	.	-	.	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	CDS	16177440	16177472	0.58	-	2	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	exon	16177440	16177472	.	-	.	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	intron	16177473	16177572	.	-	.	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	CDS	16177573	16177679	1	-	1	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	exon	16177573	16177679	.	-	.	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	intron	16177680	16177806	.	-	.	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	CDS	16177807	16177949	0.66	-	0	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	exon	16177807	16177949	.	-	.	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
Ledus.S1	AUGUSTUS	start_codon	16177947	16177949	.	-	0	transcript_id "Ledus.S1G173600.t1"; gene_id "Ledus.S1G173600"
# This transcript jg7991.t2 is derived from g12662.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7992.t1 is derived from g12663.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8377511	8377867	.	+	.	Ledus.S5G077000
Ledus.S5	AUGUSTUS	transcript	8377511	8377867	.	+	.	transcript_id "Ledus.S5G077000.t1"; gene_id "Ledus.S5G077000"
Ledus.S5	AUGUSTUS	start_codon	8377511	8377513	.	+	0	transcript_id "Ledus.S5G077000.t1"; gene_id "Ledus.S5G077000"
Ledus.S5	AUGUSTUS	CDS	8377511	8377867	0.99	+	0	transcript_id "Ledus.S5G077000.t1"; gene_id "Ledus.S5G077000"
Ledus.S5	AUGUSTUS	exon	8377511	8377867	.	+	.	transcript_id "Ledus.S5G077000.t1"; gene_id "Ledus.S5G077000"
Ledus.S5	AUGUSTUS	stop_codon	8377868	8377870	.	+	0	transcript_id "Ledus.S5G077000.t1"; gene_id "Ledus.S5G077000"
# This transcript jg493.t2 is derived from g7354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg494.t1 is derived from g7355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2895116	2897812	.	-	.	Ledus.S2G037600
Ledus.S2	AUGUSTUS	transcript	2895116	2897745	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	stop_codon	2895113	2895115	.	-	0	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2895116	2895209	0.49	-	1	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2895116	2895209	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2895210	2895288	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2895289	2895398	0.61	-	0	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2895289	2895398	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2895399	2895490	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2895491	2895575	1	-	1	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2895491	2895575	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2895576	2895680	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2895681	2895766	1	-	0	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2895681	2895766	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2895767	2895892	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2895893	2896075	1	-	0	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2895893	2896075	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2896076	2896219	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2896220	2896308	1	-	2	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2896220	2896308	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2896309	2896399	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2896400	2896631	1	-	0	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2896400	2896631	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2896632	2896732	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2896733	2896901	0.98	-	1	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2896733	2896901	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2896902	2896998	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2896999	2897146	1	-	2	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2896999	2897146	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2897147	2897245	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2897246	2897447	0.78	-	0	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2897246	2897447	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2897448	2897541	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2897542	2897592	0.79	-	0	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2897542	2897592	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2897593	2897676	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2897677	2897745	0.68	-	0	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2897677	2897745	.	-	.	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	start_codon	2897743	2897745	.	-	0	transcript_id "Ledus.S2G037600.t1"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	transcript	2895116	2897812	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	stop_codon	2895113	2895115	.	-	0	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2895116	2895209	0.56	-	1	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2895116	2895209	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2895210	2895288	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2895289	2895398	0.7	-	0	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2895289	2895398	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2895399	2895490	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2895491	2895575	1	-	1	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2895491	2895575	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2895576	2895680	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2895681	2895766	1	-	0	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2895681	2895766	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2895767	2895892	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2895893	2896075	1	-	0	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2895893	2896075	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2896076	2896219	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2896220	2896308	1	-	2	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2896220	2896308	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2896309	2896399	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2896400	2896631	1	-	0	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2896400	2896631	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2896632	2896732	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2896733	2896901	0.96	-	1	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2896733	2896901	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2896902	2896998	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2896999	2897146	1	-	2	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2896999	2897146	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2897147	2897245	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2897246	2897447	0.43	-	0	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2897246	2897447	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2897448	2897541	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2897542	2897592	0.42	-	0	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2897542	2897592	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	intron	2897593	2897689	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	CDS	2897690	2897812	0.49	-	0	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	exon	2897690	2897812	.	-	.	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
Ledus.S2	AUGUSTUS	start_codon	2897810	2897812	.	-	0	transcript_id "Ledus.S2G037600.t2"; gene_id "Ledus.S2G037600"
# This transcript jg9894.t2 is derived from g10924.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9895.t1 is derived from g10925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11003710	11004766	.	+	.	Ledus.S3G137200
Ledus.S3	AUGUSTUS	transcript	11003710	11004766	.	+	.	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	start_codon	11003710	11003712	.	+	0	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	CDS	11003710	11003722	0.66	+	0	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	exon	11003710	11003722	.	+	.	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	intron	11003723	11003814	.	+	.	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	CDS	11003815	11003825	0.64	+	2	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	exon	11003815	11003825	.	+	.	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	intron	11003826	11004037	.	+	.	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	CDS	11004038	11004085	0.65	+	0	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	exon	11004038	11004085	.	+	.	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	intron	11004086	11004178	.	+	.	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	CDS	11004179	11004323	0.55	+	0	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	exon	11004179	11004323	.	+	.	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	intron	11004324	11004431	.	+	.	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	CDS	11004432	11004766	0.55	+	2	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	exon	11004432	11004766	.	+	.	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
Ledus.S3	AUGUSTUS	stop_codon	11004767	11004769	.	+	0	transcript_id "Ledus.S3G137200.t1"; gene_id "Ledus.S3G137200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1495.t1 is derived from g8356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10586136	10587896	.	-	.	Ledus.S2G137700
Ledus.S2	AUGUSTUS	transcript	10586136	10587896	.	-	.	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	stop_codon	10586133	10586135	.	-	0	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	CDS	10586136	10586485	0.98	-	2	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	exon	10586136	10586485	.	-	.	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	intron	10586486	10586606	.	-	.	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	CDS	10586607	10586691	1	-	0	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	exon	10586607	10586691	.	-	.	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	intron	10586692	10586783	.	-	.	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	CDS	10586784	10586916	0.97	-	1	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	exon	10586784	10586916	.	-	.	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	intron	10586917	10587018	.	-	.	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	CDS	10587019	10587896	0.95	-	0	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	exon	10587019	10587896	.	-	.	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
Ledus.S2	AUGUSTUS	start_codon	10587894	10587896	.	-	0	transcript_id "Ledus.S2G137700.t1"; gene_id "Ledus.S2G137700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3680.t1 is derived from g1116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10627366	10627941	.	+	.	Ledus.S1G110100
Ledus.S1	AUGUSTUS	transcript	10627366	10627941	.	+	.	transcript_id "Ledus.S1G110100.t1"; gene_id "Ledus.S1G110100"
Ledus.S1	AUGUSTUS	start_codon	10627366	10627368	.	+	0	transcript_id "Ledus.S1G110100.t1"; gene_id "Ledus.S1G110100"
Ledus.S1	AUGUSTUS	CDS	10627366	10627941	0.95	+	0	transcript_id "Ledus.S1G110100.t1"; gene_id "Ledus.S1G110100"
Ledus.S1	AUGUSTUS	exon	10627366	10627941	.	+	.	transcript_id "Ledus.S1G110100.t1"; gene_id "Ledus.S1G110100"
Ledus.S1	AUGUSTUS	stop_codon	10627942	10627944	.	+	0	transcript_id "Ledus.S1G110100.t1"; gene_id "Ledus.S1G110100"
# This transcript jg1285.t2 is derived from g8146.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1286.t1 is derived from g8147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9053669	9054154	.	+	.	Ledus.S2G116800
Ledus.S2	AUGUSTUS	transcript	9053669	9054154	.	+	.	transcript_id "Ledus.S2G116800.t1"; gene_id "Ledus.S2G116800"
Ledus.S2	AUGUSTUS	start_codon	9053669	9053671	.	+	0	transcript_id "Ledus.S2G116800.t1"; gene_id "Ledus.S2G116800"
Ledus.S2	AUGUSTUS	CDS	9053669	9054154	0.96	+	0	transcript_id "Ledus.S2G116800.t1"; gene_id "Ledus.S2G116800"
Ledus.S2	AUGUSTUS	exon	9053669	9054154	.	+	.	transcript_id "Ledus.S2G116800.t1"; gene_id "Ledus.S2G116800"
Ledus.S2	AUGUSTUS	stop_codon	9054155	9054157	.	+	0	transcript_id "Ledus.S2G116800.t1"; gene_id "Ledus.S2G116800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2801.t1 is derived from g235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3847065	3850360	.	-	.	Ledus.S1G022200
Ledus.S1	AUGUSTUS	transcript	3847065	3850360	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	stop_codon	3847062	3847064	.	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3847065	3847152	1	-	1	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3847065	3847152	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3847153	3847247	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3847248	3847314	0.98	-	2	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3847248	3847314	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3847315	3847423	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3847424	3847472	0.99	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3847424	3847472	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3847473	3847589	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3847590	3847646	1	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3847590	3847646	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3847647	3847775	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3847776	3847847	1	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3847776	3847847	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3847848	3848080	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3848081	3848172	1	-	2	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3848081	3848172	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3848173	3848269	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3848270	3848342	0.98	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3848270	3848342	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3848343	3848457	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3848458	3848532	0.9	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3848458	3848532	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3848533	3848619	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3848620	3848684	0.98	-	2	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3848620	3848684	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3848685	3848770	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3848771	3848858	0.98	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3848771	3848858	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3848859	3848965	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3848966	3849016	0.95	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3848966	3849016	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3849017	3849120	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3849121	3849219	1	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3849121	3849219	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3849220	3849318	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3849319	3849357	1	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3849319	3849357	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3849358	3849455	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3849456	3849539	1	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3849456	3849539	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3849540	3849623	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3849624	3849712	1	-	2	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3849624	3849712	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3849713	3849827	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3849828	3849914	1	-	2	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3849828	3849914	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3849915	3850041	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3850042	3850144	1	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3850042	3850144	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	intron	3850145	3850267	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	CDS	3850268	3850360	0.73	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	exon	3850268	3850360	.	-	.	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
Ledus.S1	AUGUSTUS	start_codon	3850358	3850360	.	-	0	transcript_id "Ledus.S1G022200.t1"; gene_id "Ledus.S1G022200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7194.t1 is derived from g6725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2061828	2063982	.	+	.	Ledus.C7G025500
Ledus.C7	AUGUSTUS	transcript	2061828	2063982	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	start_codon	2061828	2061830	.	+	0	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	CDS	2061828	2062340	0.93	+	0	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	exon	2061828	2062340	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	intron	2062341	2062467	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	CDS	2062468	2062584	0.94	+	0	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	exon	2062468	2062584	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	intron	2062585	2062721	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	CDS	2062722	2062900	1	+	0	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	exon	2062722	2062900	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	intron	2062901	2063028	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	CDS	2063029	2063122	1	+	1	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	exon	2063029	2063122	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	intron	2063123	2063268	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	CDS	2063269	2063346	1	+	0	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	exon	2063269	2063346	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	intron	2063347	2063463	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	CDS	2063464	2063565	1	+	0	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	exon	2063464	2063565	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	intron	2063566	2063685	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	CDS	2063686	2063806	0.47	+	0	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	exon	2063686	2063806	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	intron	2063807	2063968	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	CDS	2063969	2063982	0.43	+	2	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	exon	2063969	2063982	.	+	.	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
Ledus.C7	AUGUSTUS	stop_codon	2063983	2063985	.	+	0	transcript_id "Ledus.C7G025500.t1"; gene_id "Ledus.C7G025500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7851.t1 is derived from g12522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7496221	7497029	.	-	.	Ledus.S5G062900
Ledus.S5	AUGUSTUS	transcript	7496221	7497029	.	-	.	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	stop_codon	7496218	7496220	.	-	0	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	CDS	7496221	7496359	0.92	-	1	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	exon	7496221	7496359	.	-	.	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	intron	7496360	7496439	.	-	.	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	CDS	7496440	7496542	0.58	-	2	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	exon	7496440	7496542	.	-	.	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	intron	7496543	7496656	.	-	.	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	CDS	7496657	7496771	0.38	-	0	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	exon	7496657	7496771	.	-	.	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	intron	7496772	7496957	.	-	.	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	CDS	7496958	7497029	0.67	-	0	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	exon	7496958	7497029	.	-	.	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
Ledus.S5	AUGUSTUS	start_codon	7497027	7497029	.	-	0	transcript_id "Ledus.S5G062900.t1"; gene_id "Ledus.S5G062900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1917.t1 is derived from g8780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13387014	13389071	.	+	.	Ledus.S2G179900
Ledus.S2	AUGUSTUS	transcript	13387014	13389071	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	start_codon	13387014	13387016	.	+	0	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	CDS	13387014	13387116	1	+	0	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	exon	13387014	13387116	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	intron	13387117	13387231	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	CDS	13387232	13387317	1	+	2	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	exon	13387232	13387317	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	intron	13387318	13387400	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	CDS	13387401	13387598	1	+	0	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	exon	13387401	13387598	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	intron	13387599	13387716	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	CDS	13387717	13387794	0.99	+	0	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	exon	13387717	13387794	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	intron	13387795	13387904	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	CDS	13387905	13388032	0.93	+	0	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	exon	13387905	13388032	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	intron	13388033	13388149	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	CDS	13388150	13388216	1	+	1	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	exon	13388150	13388216	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	intron	13388217	13388298	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	CDS	13388299	13388408	0.98	+	0	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	exon	13388299	13388408	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	intron	13388409	13388519	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	CDS	13388520	13388693	0.7	+	1	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	exon	13388520	13388693	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	intron	13388694	13388833	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	CDS	13388834	13389071	0.94	+	1	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	exon	13388834	13389071	.	+	.	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
Ledus.S2	AUGUSTUS	stop_codon	13389072	13389074	.	+	0	transcript_id "Ledus.S2G179900.t1"; gene_id "Ledus.S2G179900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11533.t1 is derived from g5151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5148616	5151836	.	+	.	Ledus.S4G068900
Ledus.S4	AUGUSTUS	transcript	5148616	5151836	.	+	.	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	start_codon	5148616	5148618	.	+	0	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	CDS	5148616	5149760	0.94	+	0	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	exon	5148616	5149760	.	+	.	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	intron	5149761	5150367	.	+	.	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	CDS	5150368	5150518	1	+	1	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	exon	5150368	5150518	.	+	.	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	intron	5150519	5150744	.	+	.	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	CDS	5150745	5151029	1	+	0	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	exon	5150745	5151029	.	+	.	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	intron	5151030	5151157	.	+	.	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	CDS	5151158	5151314	1	+	0	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	exon	5151158	5151314	.	+	.	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	intron	5151315	5151413	.	+	.	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	CDS	5151414	5151492	1	+	2	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	exon	5151414	5151492	.	+	.	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	intron	5151493	5151598	.	+	.	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	CDS	5151599	5151836	0.92	+	1	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	exon	5151599	5151836	.	+	.	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
Ledus.S4	AUGUSTUS	stop_codon	5151837	5151839	.	+	0	transcript_id "Ledus.S4G068900.t1"; gene_id "Ledus.S4G068900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6481.t1 is derived from g3924.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31534430	31541425	.	-	.	Ledus.S1G390200
Ledus.S1	AUGUSTUS	transcript	31534430	31541425	.	-	.	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	stop_codon	31534427	31534429	.	-	0	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	CDS	31534430	31535785	0.94	-	0	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	exon	31534430	31535785	.	-	.	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	intron	31535786	31535914	.	-	.	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	CDS	31535915	31537822	1	-	0	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	exon	31535915	31537822	.	-	.	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	intron	31537823	31538014	.	-	.	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	CDS	31538015	31538380	0.85	-	0	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	exon	31538015	31538380	.	-	.	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	intron	31538381	31538593	.	-	.	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	CDS	31538594	31541425	0.45	-	0	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	exon	31538594	31541425	.	-	.	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
Ledus.S1	AUGUSTUS	start_codon	31541423	31541425	.	-	0	transcript_id "Ledus.S1G390200.t1"; gene_id "Ledus.S1G390200"
# This transcript jg12081.t2 is derived from g5700.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12082.t1 is derived from g5701.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9432281	9436085	.	-	.	Ledus.S4G123800
Ledus.S4	AUGUSTUS	transcript	9432281	9436085	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	stop_codon	9432278	9432280	.	-	0	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9432281	9432290	0.99	-	1	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9432281	9432290	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9432291	9432451	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9432452	9432506	0.51	-	2	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9432452	9432506	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9432507	9432668	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9432669	9433072	0.19	-	1	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9432669	9433072	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9433073	9433465	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9433466	9433482	0.53	-	0	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9433466	9433482	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9433483	9433544	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9433545	9433916	0.98	-	0	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9433545	9433916	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9433917	9434027	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9434028	9434090	0.86	-	0	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9434028	9434090	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9434091	9434200	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9434201	9434350	0.99	-	0	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9434201	9434350	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9434351	9434436	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9434437	9434592	1	-	0	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9434437	9434592	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9434593	9434721	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9434722	9434790	1	-	0	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9434722	9434790	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9434791	9434885	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9434886	9435146	1	-	0	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9434886	9435146	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9435147	9435228	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9435229	9435329	1	-	2	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9435229	9435329	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9435330	9435530	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9435531	9435654	1	-	0	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9435531	9435654	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9435655	9435770	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9435771	9436085	0.76	-	0	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9435771	9436085	.	-	.	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	start_codon	9436083	9436085	.	-	0	transcript_id "Ledus.S4G123800.t1"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	transcript	9432281	9436085	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	stop_codon	9432278	9432280	.	-	0	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9432281	9432293	0.7	-	1	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9432281	9432293	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9432294	9432451	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9432452	9432506	0.33	-	2	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9432452	9432506	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9432507	9432668	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9432669	9433072	0.13	-	1	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9432669	9433072	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9433073	9433465	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9433466	9433482	0.53	-	0	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9433466	9433482	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9433483	9433544	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9433545	9433916	0.96	-	0	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9433545	9433916	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9433917	9434027	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9434028	9434090	0.9	-	0	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9434028	9434090	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9434091	9434200	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9434201	9434350	0.99	-	0	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9434201	9434350	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9434351	9434436	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9434437	9434592	1	-	0	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9434437	9434592	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9434593	9434721	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9434722	9434790	1	-	0	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9434722	9434790	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9434791	9434885	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9434886	9435146	1	-	0	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9434886	9435146	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9435147	9435228	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9435229	9435329	1	-	2	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9435229	9435329	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9435330	9435530	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9435531	9435654	1	-	0	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9435531	9435654	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	intron	9435655	9435770	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	CDS	9435771	9436085	0.79	-	0	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	exon	9435771	9436085	.	-	.	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
Ledus.S4	AUGUSTUS	start_codon	9436083	9436085	.	-	0	transcript_id "Ledus.S4G123800.t2"; gene_id "Ledus.S4G123800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8459.t1 is derived from g13131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11805419	11808056	.	+	.	Ledus.S5G123700
Ledus.S5	AUGUSTUS	transcript	11805419	11808056	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	start_codon	11805419	11805421	.	+	0	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	CDS	11805419	11805435	0.26	+	0	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	exon	11805419	11805435	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	intron	11805436	11806099	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	CDS	11806100	11806149	0.68	+	1	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	exon	11806100	11806149	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	intron	11806150	11806388	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	CDS	11806389	11806424	0.68	+	2	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	exon	11806389	11806424	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	intron	11806425	11806574	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	CDS	11806575	11806642	0.68	+	2	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	exon	11806575	11806642	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	intron	11806643	11806808	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	CDS	11806809	11807049	1	+	0	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	exon	11806809	11807049	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	intron	11807050	11807146	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	CDS	11807147	11807223	1	+	2	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	exon	11807147	11807223	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	intron	11807224	11807426	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	CDS	11807427	11808056	1	+	0	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	exon	11807427	11808056	.	+	.	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
Ledus.S5	AUGUSTUS	stop_codon	11808057	11808059	.	+	0	transcript_id "Ledus.S5G123700.t1"; gene_id "Ledus.S5G123700"
# This transcript jg12039.t2 is derived from g5658.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12040.t1 is derived from g5659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9107523	9107801	.	+	.	Ledus.S4G119600
Ledus.S4	AUGUSTUS	transcript	9107523	9107801	.	+	.	transcript_id "Ledus.S4G119600.t1"; gene_id "Ledus.S4G119600"
Ledus.S4	AUGUSTUS	start_codon	9107523	9107525	.	+	0	transcript_id "Ledus.S4G119600.t1"; gene_id "Ledus.S4G119600"
Ledus.S4	AUGUSTUS	CDS	9107523	9107801	1	+	0	transcript_id "Ledus.S4G119600.t1"; gene_id "Ledus.S4G119600"
Ledus.S4	AUGUSTUS	exon	9107523	9107801	.	+	.	transcript_id "Ledus.S4G119600.t1"; gene_id "Ledus.S4G119600"
Ledus.S4	AUGUSTUS	stop_codon	9107802	9107804	.	+	0	transcript_id "Ledus.S4G119600.t1"; gene_id "Ledus.S4G119600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg617.t1 is derived from g7478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3691162	3692939	.	+	.	Ledus.S2G049900
Ledus.S2	AUGUSTUS	transcript	3691162	3692939	.	+	.	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	start_codon	3691162	3691164	.	+	0	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	CDS	3691162	3691191	0.64	+	0	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	exon	3691162	3691191	.	+	.	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	intron	3691192	3691390	.	+	.	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	CDS	3691391	3691723	1	+	0	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	exon	3691391	3691723	.	+	.	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	intron	3691724	3691824	.	+	.	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	CDS	3691825	3691962	1	+	0	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	exon	3691825	3691962	.	+	.	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	intron	3691963	3692060	.	+	.	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	CDS	3692061	3692939	1	+	0	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	exon	3692061	3692939	.	+	.	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
Ledus.S2	AUGUSTUS	stop_codon	3692940	3692942	.	+	0	transcript_id "Ledus.S2G049900.t1"; gene_id "Ledus.S2G049900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10576.t1 is derived from g11606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16223021	16224485	.	+	.	Ledus.S3G205300
Ledus.S3	AUGUSTUS	transcript	16223021	16224485	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	start_codon	16223021	16223023	.	+	0	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	CDS	16223021	16223129	0.97	+	0	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	exon	16223021	16223129	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	intron	16223130	16223213	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	CDS	16223214	16223390	1	+	2	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	exon	16223214	16223390	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	intron	16223391	16223466	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	CDS	16223467	16223681	1	+	2	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	exon	16223467	16223681	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	intron	16223682	16223757	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	CDS	16223758	16223796	1	+	0	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	exon	16223758	16223796	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	intron	16223797	16223887	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	CDS	16223888	16223917	0.8	+	0	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	exon	16223888	16223917	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	intron	16223918	16224218	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	CDS	16224219	16224242	0.79	+	0	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	exon	16224219	16224242	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	intron	16224243	16224338	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	CDS	16224339	16224485	0.79	+	0	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	exon	16224339	16224485	.	+	.	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
Ledus.S3	AUGUSTUS	stop_codon	16224486	16224488	.	+	0	transcript_id "Ledus.S3G205300.t1"; gene_id "Ledus.S3G205300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9882.t1 is derived from g10912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10911520	10914729	.	-	.	Ledus.S3G135900
Ledus.S3	AUGUSTUS	transcript	10911520	10914729	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	stop_codon	10911517	10911519	.	-	0	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	CDS	10911520	10911657	0.7	-	0	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	exon	10911520	10911657	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	intron	10911658	10911752	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	CDS	10911753	10911890	1	-	0	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	exon	10911753	10911890	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	intron	10911891	10912047	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	CDS	10912048	10912165	1	-	1	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	exon	10912048	10912165	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	intron	10912166	10912297	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	CDS	10912298	10912368	1	-	0	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	exon	10912298	10912368	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	intron	10912369	10912483	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	CDS	10912484	10912732	0.99	-	0	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	exon	10912484	10912732	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	intron	10912733	10912843	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	CDS	10912844	10913320	0.94	-	0	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	exon	10912844	10913320	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	intron	10913321	10913400	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	CDS	10913401	10913580	1	-	0	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	exon	10913401	10913580	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	intron	10913581	10914264	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	CDS	10914265	10914729	0.93	-	0	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	exon	10914265	10914729	.	-	.	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
Ledus.S3	AUGUSTUS	start_codon	10914727	10914729	.	-	0	transcript_id "Ledus.S3G135900.t1"; gene_id "Ledus.S3G135900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1373.t1 is derived from g8234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9577846	9580705	.	-	.	Ledus.S2G125500
Ledus.S2	AUGUSTUS	transcript	9577846	9580705	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	stop_codon	9577843	9577845	.	-	0	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9577846	9577974	0.95	-	0	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9577846	9577974	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9577975	9578087	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9578088	9578180	1	-	0	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9578088	9578180	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9578181	9578269	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9578270	9578441	1	-	1	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9578270	9578441	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9578442	9578527	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9578528	9578604	1	-	0	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9578528	9578604	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9578605	9578763	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9578764	9578923	1	-	1	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9578764	9578923	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9578924	9579032	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9579033	9579142	0.96	-	0	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9579033	9579142	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9579143	9579231	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9579232	9579291	1	-	0	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9579232	9579291	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9579292	9579417	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9579418	9579491	1	-	2	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9579418	9579491	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9579492	9579573	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9579574	9579697	1	-	0	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9579574	9579697	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9579698	9579806	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9579807	9579884	1	-	0	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9579807	9579884	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9579885	9579978	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9579979	9580085	1	-	2	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9579979	9580085	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9580086	9580176	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9580177	9580281	0.97	-	2	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9580177	9580281	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9580282	9580566	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9580567	9580593	0.98	-	2	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9580567	9580593	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	intron	9580594	9580689	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	CDS	9580690	9580705	0.99	-	0	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	exon	9580690	9580705	.	-	.	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
Ledus.S2	AUGUSTUS	start_codon	9580703	9580705	.	-	0	transcript_id "Ledus.S2G125500.t1"; gene_id "Ledus.S2G125500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7858.t1 is derived from g12529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7505365	7505787	.	-	.	Ledus.S5G063600
Ledus.S5	AUGUSTUS	transcript	7505365	7505787	.	-	.	transcript_id "Ledus.S5G063600.t1"; gene_id "Ledus.S5G063600"
Ledus.S5	AUGUSTUS	stop_codon	7505362	7505364	.	-	0	transcript_id "Ledus.S5G063600.t1"; gene_id "Ledus.S5G063600"
Ledus.S5	AUGUSTUS	CDS	7505365	7505513	0.89	-	2	transcript_id "Ledus.S5G063600.t1"; gene_id "Ledus.S5G063600"
Ledus.S5	AUGUSTUS	exon	7505365	7505513	.	-	.	transcript_id "Ledus.S5G063600.t1"; gene_id "Ledus.S5G063600"
Ledus.S5	AUGUSTUS	intron	7505514	7505663	.	-	.	transcript_id "Ledus.S5G063600.t1"; gene_id "Ledus.S5G063600"
Ledus.S5	AUGUSTUS	CDS	7505664	7505787	0.12	-	0	transcript_id "Ledus.S5G063600.t1"; gene_id "Ledus.S5G063600"
Ledus.S5	AUGUSTUS	exon	7505664	7505787	.	-	.	transcript_id "Ledus.S5G063600.t1"; gene_id "Ledus.S5G063600"
Ledus.S5	AUGUSTUS	start_codon	7505785	7505787	.	-	0	transcript_id "Ledus.S5G063600.t1"; gene_id "Ledus.S5G063600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12682.t1 is derived from g6304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13852819	13853448	.	-	.	Ledus.S4G183800
Ledus.S4	AUGUSTUS	transcript	13852819	13853448	.	-	.	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	stop_codon	13852816	13852818	.	-	0	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	CDS	13852819	13852979	0.7	-	2	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	exon	13852819	13852979	.	-	.	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	intron	13852980	13853066	.	-	.	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	CDS	13853067	13853142	1	-	0	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	exon	13853067	13853142	.	-	.	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	intron	13853143	13853220	.	-	.	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	CDS	13853221	13853306	0.51	-	2	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	exon	13853221	13853306	.	-	.	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	intron	13853307	13853390	.	-	.	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	CDS	13853391	13853448	0.51	-	0	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	exon	13853391	13853448	.	-	.	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
Ledus.S4	AUGUSTUS	start_codon	13853446	13853448	.	-	0	transcript_id "Ledus.S4G183800.t1"; gene_id "Ledus.S4G183800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3614.t1 is derived from g1050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10218910	10223268	.	-	.	Ledus.S1G103500
Ledus.S1	AUGUSTUS	transcript	10218910	10223268	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	stop_codon	10218907	10218909	.	-	0	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	CDS	10218910	10219172	0.96	-	2	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	exon	10218910	10219172	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	intron	10219173	10219263	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	CDS	10219264	10219453	1	-	0	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	exon	10219264	10219453	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	intron	10219454	10219618	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	CDS	10219619	10220934	0.33	-	2	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	exon	10219619	10220934	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	intron	10220935	10221135	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	CDS	10221136	10221221	0.38	-	1	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	exon	10221136	10221221	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	intron	10221222	10221893	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	CDS	10221894	10222112	0.2	-	1	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	exon	10221894	10222112	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	intron	10222113	10222194	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	CDS	10222195	10222266	0.11	-	1	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	exon	10222195	10222266	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	intron	10222267	10222816	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	CDS	10222817	10223092	0.23	-	1	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	exon	10222817	10223092	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	intron	10223093	10223173	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	CDS	10223174	10223268	0.81	-	0	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	exon	10223174	10223268	.	-	.	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
Ledus.S1	AUGUSTUS	start_codon	10223266	10223268	.	-	0	transcript_id "Ledus.S1G103500.t1"; gene_id "Ledus.S1G103500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11890.t1 is derived from g5509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7566403	7567653	.	+	.	Ledus.S4G104600
Ledus.S4	AUGUSTUS	transcript	7566403	7567653	.	+	.	transcript_id "Ledus.S4G104600.t1"; gene_id "Ledus.S4G104600"
Ledus.S4	AUGUSTUS	start_codon	7566403	7566405	.	+	0	transcript_id "Ledus.S4G104600.t1"; gene_id "Ledus.S4G104600"
Ledus.S4	AUGUSTUS	CDS	7566403	7567653	0.83	+	0	transcript_id "Ledus.S4G104600.t1"; gene_id "Ledus.S4G104600"
Ledus.S4	AUGUSTUS	exon	7566403	7567653	.	+	.	transcript_id "Ledus.S4G104600.t1"; gene_id "Ledus.S4G104600"
Ledus.S4	AUGUSTUS	stop_codon	7567654	7567656	.	+	0	transcript_id "Ledus.S4G104600.t1"; gene_id "Ledus.S4G104600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3888.t1 is derived from g1324.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13409104	13409435	.	-	.	Ledus.S1G130900
Ledus.S1	AUGUSTUS	transcript	13409104	13409435	.	-	.	transcript_id "Ledus.S1G130900.t1"; gene_id "Ledus.S1G130900"
Ledus.S1	AUGUSTUS	stop_codon	13409101	13409103	.	-	0	transcript_id "Ledus.S1G130900.t1"; gene_id "Ledus.S1G130900"
Ledus.S1	AUGUSTUS	CDS	13409104	13409165	0.62	-	2	transcript_id "Ledus.S1G130900.t1"; gene_id "Ledus.S1G130900"
Ledus.S1	AUGUSTUS	exon	13409104	13409165	.	-	.	transcript_id "Ledus.S1G130900.t1"; gene_id "Ledus.S1G130900"
Ledus.S1	AUGUSTUS	intron	13409166	13409266	.	-	.	transcript_id "Ledus.S1G130900.t1"; gene_id "Ledus.S1G130900"
Ledus.S1	AUGUSTUS	CDS	13409267	13409435	0.59	-	0	transcript_id "Ledus.S1G130900.t1"; gene_id "Ledus.S1G130900"
Ledus.S1	AUGUSTUS	exon	13409267	13409435	.	-	.	transcript_id "Ledus.S1G130900.t1"; gene_id "Ledus.S1G130900"
Ledus.S1	AUGUSTUS	start_codon	13409433	13409435	.	-	0	transcript_id "Ledus.S1G130900.t1"; gene_id "Ledus.S1G130900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4387.t1 is derived from g1823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16754332	16757745	.	-	.	Ledus.S1G180800
Ledus.S1	AUGUSTUS	transcript	16754332	16757745	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	stop_codon	16754329	16754331	.	-	0	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	CDS	16754332	16754676	1	-	0	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	exon	16754332	16754676	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	intron	16754677	16754811	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	CDS	16754812	16754920	1	-	1	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	exon	16754812	16754920	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	intron	16754921	16755012	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	CDS	16755013	16755545	1	-	0	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	exon	16755013	16755545	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	intron	16755546	16755633	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	CDS	16755634	16755832	1	-	1	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	exon	16755634	16755832	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	intron	16755833	16756044	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	CDS	16756045	16756169	1	-	0	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	exon	16756045	16756169	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	intron	16756170	16756316	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	CDS	16756317	16756400	1	-	0	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	exon	16756317	16756400	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	intron	16756401	16756522	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	CDS	16756523	16756651	1	-	0	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	exon	16756523	16756651	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	intron	16756652	16756773	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	CDS	16756774	16756902	1	-	0	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	exon	16756774	16756902	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	intron	16756903	16757008	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	CDS	16757009	16757155	1	-	0	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	exon	16757009	16757155	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	intron	16757156	16757242	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	CDS	16757243	16757477	1	-	1	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	exon	16757243	16757477	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	intron	16757478	16757614	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	CDS	16757615	16757745	0.67	-	0	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	exon	16757615	16757745	.	-	.	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
Ledus.S1	AUGUSTUS	start_codon	16757743	16757745	.	-	0	transcript_id "Ledus.S1G180800.t1"; gene_id "Ledus.S1G180800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6949.t1 is derived from g6480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	131371	131741	.	+	.	Ledus.C7G001000
Ledus.C7	AUGUSTUS	transcript	131371	131741	.	+	.	transcript_id "Ledus.C7G001000.t1"; gene_id "Ledus.C7G001000"
Ledus.C7	AUGUSTUS	start_codon	131371	131373	.	+	0	transcript_id "Ledus.C7G001000.t1"; gene_id "Ledus.C7G001000"
Ledus.C7	AUGUSTUS	CDS	131371	131457	0.63	+	0	transcript_id "Ledus.C7G001000.t1"; gene_id "Ledus.C7G001000"
Ledus.C7	AUGUSTUS	exon	131371	131457	.	+	.	transcript_id "Ledus.C7G001000.t1"; gene_id "Ledus.C7G001000"
Ledus.C7	AUGUSTUS	intron	131458	131630	.	+	.	transcript_id "Ledus.C7G001000.t1"; gene_id "Ledus.C7G001000"
Ledus.C7	AUGUSTUS	CDS	131631	131741	0.6	+	0	transcript_id "Ledus.C7G001000.t1"; gene_id "Ledus.C7G001000"
Ledus.C7	AUGUSTUS	exon	131631	131741	.	+	.	transcript_id "Ledus.C7G001000.t1"; gene_id "Ledus.C7G001000"
Ledus.C7	AUGUSTUS	stop_codon	131742	131744	.	+	0	transcript_id "Ledus.C7G001000.t1"; gene_id "Ledus.C7G001000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6273.t1 is derived from g3716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30062691	30065587	.	-	.	Ledus.S1G369400
Ledus.S1	AUGUSTUS	transcript	30062691	30065587	.	-	.	transcript_id "Ledus.S1G369400.t1"; gene_id "Ledus.S1G369400"
Ledus.S1	AUGUSTUS	stop_codon	30062688	30062690	.	-	0	transcript_id "Ledus.S1G369400.t1"; gene_id "Ledus.S1G369400"
Ledus.S1	AUGUSTUS	CDS	30062691	30065128	1	-	2	transcript_id "Ledus.S1G369400.t1"; gene_id "Ledus.S1G369400"
Ledus.S1	AUGUSTUS	exon	30062691	30065128	.	-	.	transcript_id "Ledus.S1G369400.t1"; gene_id "Ledus.S1G369400"
Ledus.S1	AUGUSTUS	intron	30065129	30065242	.	-	.	transcript_id "Ledus.S1G369400.t1"; gene_id "Ledus.S1G369400"
Ledus.S1	AUGUSTUS	CDS	30065243	30065330	1	-	0	transcript_id "Ledus.S1G369400.t1"; gene_id "Ledus.S1G369400"
Ledus.S1	AUGUSTUS	exon	30065243	30065330	.	-	.	transcript_id "Ledus.S1G369400.t1"; gene_id "Ledus.S1G369400"
Ledus.S1	AUGUSTUS	intron	30065331	30065512	.	-	.	transcript_id "Ledus.S1G369400.t1"; gene_id "Ledus.S1G369400"
Ledus.S1	AUGUSTUS	CDS	30065513	30065587	0.6	-	0	transcript_id "Ledus.S1G369400.t1"; gene_id "Ledus.S1G369400"
Ledus.S1	AUGUSTUS	exon	30065513	30065587	.	-	.	transcript_id "Ledus.S1G369400.t1"; gene_id "Ledus.S1G369400"
Ledus.S1	AUGUSTUS	start_codon	30065585	30065587	.	-	0	transcript_id "Ledus.S1G369400.t1"; gene_id "Ledus.S1G369400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9137.t1 is derived from g10167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4789483	4791521	.	+	.	Ledus.S3G061400
Ledus.S3	AUGUSTUS	transcript	4789483	4791521	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	start_codon	4789483	4789485	.	+	0	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	CDS	4789483	4789797	1	+	0	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	exon	4789483	4789797	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	intron	4789798	4789872	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	CDS	4789873	4790136	1	+	0	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	exon	4789873	4790136	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	intron	4790137	4790207	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	CDS	4790208	4790324	0.69	+	0	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	exon	4790208	4790324	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	intron	4790325	4790443	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	CDS	4790444	4790592	0.69	+	0	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	exon	4790444	4790592	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	intron	4790593	4790660	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	CDS	4790661	4790952	1	+	1	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	exon	4790661	4790952	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	intron	4790953	4791030	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	CDS	4791031	4791195	1	+	0	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	exon	4791031	4791195	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	intron	4791196	4791278	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	CDS	4791279	4791521	1	+	0	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	exon	4791279	4791521	.	+	.	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
Ledus.S3	AUGUSTUS	stop_codon	4791522	4791524	.	+	0	transcript_id "Ledus.S3G061400.t1"; gene_id "Ledus.S3G061400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10866.t1 is derived from g4484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	163934	164352	.	+	.	Ledus.S4G002200
Ledus.S4	AUGUSTUS	transcript	163934	164352	.	+	.	transcript_id "Ledus.S4G002200.t1"; gene_id "Ledus.S4G002200"
Ledus.S4	AUGUSTUS	start_codon	163934	163936	.	+	0	transcript_id "Ledus.S4G002200.t1"; gene_id "Ledus.S4G002200"
Ledus.S4	AUGUSTUS	CDS	163934	164019	1	+	0	transcript_id "Ledus.S4G002200.t1"; gene_id "Ledus.S4G002200"
Ledus.S4	AUGUSTUS	exon	163934	164019	.	+	.	transcript_id "Ledus.S4G002200.t1"; gene_id "Ledus.S4G002200"
Ledus.S4	AUGUSTUS	intron	164020	164114	.	+	.	transcript_id "Ledus.S4G002200.t1"; gene_id "Ledus.S4G002200"
Ledus.S4	AUGUSTUS	CDS	164115	164352	0.55	+	1	transcript_id "Ledus.S4G002200.t1"; gene_id "Ledus.S4G002200"
Ledus.S4	AUGUSTUS	exon	164115	164352	.	+	.	transcript_id "Ledus.S4G002200.t1"; gene_id "Ledus.S4G002200"
Ledus.S4	AUGUSTUS	stop_codon	164353	164355	.	+	0	transcript_id "Ledus.S4G002200.t1"; gene_id "Ledus.S4G002200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10229.t1 is derived from g11259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13676061	13676333	.	+	.	Ledus.S3G170600
Ledus.S3	AUGUSTUS	transcript	13676061	13676333	.	+	.	transcript_id "Ledus.S3G170600.t1"; gene_id "Ledus.S3G170600"
Ledus.S3	AUGUSTUS	start_codon	13676061	13676063	.	+	0	transcript_id "Ledus.S3G170600.t1"; gene_id "Ledus.S3G170600"
Ledus.S3	AUGUSTUS	CDS	13676061	13676333	0.92	+	0	transcript_id "Ledus.S3G170600.t1"; gene_id "Ledus.S3G170600"
Ledus.S3	AUGUSTUS	exon	13676061	13676333	.	+	.	transcript_id "Ledus.S3G170600.t1"; gene_id "Ledus.S3G170600"
Ledus.S3	AUGUSTUS	stop_codon	13676334	13676336	.	+	0	transcript_id "Ledus.S3G170600.t1"; gene_id "Ledus.S3G170600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4724.t1 is derived from g2162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19259627	19264631	.	-	.	Ledus.S1G214500
Ledus.S1	AUGUSTUS	transcript	19259627	19264631	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	stop_codon	19259624	19259626	.	-	0	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19259627	19260003	1	-	2	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19259627	19260003	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19260004	19260113	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19260114	19260868	1	-	1	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19260114	19260868	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19260869	19260947	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19260948	19261155	1	-	2	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19260948	19261155	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19261156	19261227	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19261228	19261296	1	-	2	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19261228	19261296	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19261297	19261376	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19261377	19261448	1	-	2	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19261377	19261448	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19261449	19261537	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19261538	19261718	1	-	0	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19261538	19261718	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19261719	19261790	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19261791	19262476	1	-	2	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19261791	19262476	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19262477	19262576	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19262577	19262831	1	-	2	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19262577	19262831	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19262832	19262918	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19262919	19263285	1	-	0	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19262919	19263285	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19263286	19263368	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19263369	19263500	1	-	0	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19263369	19263500	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19263501	19263590	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19263591	19263703	1	-	2	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19263591	19263703	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19263704	19263784	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19263785	19263928	1	-	2	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19263785	19263928	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19263929	19264014	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19264015	19264161	1	-	2	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19264015	19264161	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	intron	19264162	19264234	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	CDS	19264235	19264631	0.81	-	0	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	exon	19264235	19264631	.	-	.	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
Ledus.S1	AUGUSTUS	start_codon	19264629	19264631	.	-	0	transcript_id "Ledus.S1G214500.t1"; gene_id "Ledus.S1G214500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9033.t1 is derived from g10063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3951363	3952553	.	-	.	Ledus.S3G051000
Ledus.S3	AUGUSTUS	transcript	3951363	3952553	.	-	.	transcript_id "Ledus.S3G051000.t1"; gene_id "Ledus.S3G051000"
Ledus.S3	AUGUSTUS	stop_codon	3951360	3951362	.	-	0	transcript_id "Ledus.S3G051000.t1"; gene_id "Ledus.S3G051000"
Ledus.S3	AUGUSTUS	CDS	3951363	3952553	0.64	-	0	transcript_id "Ledus.S3G051000.t1"; gene_id "Ledus.S3G051000"
Ledus.S3	AUGUSTUS	exon	3951363	3952553	.	-	.	transcript_id "Ledus.S3G051000.t1"; gene_id "Ledus.S3G051000"
Ledus.S3	AUGUSTUS	start_codon	3952551	3952553	.	-	0	transcript_id "Ledus.S3G051000.t1"; gene_id "Ledus.S3G051000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3001.t1 is derived from g436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5222702	5223628	.	+	.	Ledus.S1G042200
Ledus.S1	AUGUSTUS	transcript	5222702	5223628	.	+	.	transcript_id "Ledus.S1G042200.t1"; gene_id "Ledus.S1G042200"
Ledus.S1	AUGUSTUS	start_codon	5222702	5222704	.	+	0	transcript_id "Ledus.S1G042200.t1"; gene_id "Ledus.S1G042200"
Ledus.S1	AUGUSTUS	CDS	5222702	5223628	1	+	0	transcript_id "Ledus.S1G042200.t1"; gene_id "Ledus.S1G042200"
Ledus.S1	AUGUSTUS	exon	5222702	5223628	.	+	.	transcript_id "Ledus.S1G042200.t1"; gene_id "Ledus.S1G042200"
Ledus.S1	AUGUSTUS	stop_codon	5223629	5223631	.	+	0	transcript_id "Ledus.S1G042200.t1"; gene_id "Ledus.S1G042200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3404.t1 is derived from g839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8101202	8105597	.	+	.	Ledus.S1G082500
Ledus.S1	AUGUSTUS	transcript	8101202	8105597	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	start_codon	8101202	8101204	.	+	0	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8101202	8101343	0.99	+	0	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8101202	8101343	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8101344	8101934	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8101935	8102163	0.99	+	2	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8101935	8102163	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8102164	8102656	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8102657	8102774	1	+	1	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8102657	8102774	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8102775	8102930	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8102931	8103308	0.91	+	0	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8102931	8103308	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8103309	8103412	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8103413	8103499	1	+	0	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8103413	8103499	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8103500	8103597	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8103598	8103682	1	+	0	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8103598	8103682	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8103683	8103786	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8103787	8103857	1	+	2	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8103787	8103857	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8103858	8103948	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8103949	8104013	1	+	0	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8103949	8104013	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8104014	8104109	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8104110	8104182	1	+	1	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8104110	8104182	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8104183	8104321	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8104322	8104387	1	+	0	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8104322	8104387	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8104388	8104695	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8104696	8104719	1	+	0	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8104696	8104719	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8104720	8104834	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8104835	8104906	1	+	0	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8104835	8104906	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8104907	8105063	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8105064	8105107	1	+	0	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8105064	8105107	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8105108	8105180	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8105181	8105317	0.98	+	1	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8105181	8105317	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	intron	8105318	8105541	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	CDS	8105542	8105597	0.97	+	2	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	exon	8105542	8105597	.	+	.	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
Ledus.S1	AUGUSTUS	stop_codon	8105598	8105600	.	+	0	transcript_id "Ledus.S1G082500.t1"; gene_id "Ledus.S1G082500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3666.t1 is derived from g1102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10562658	10565397	.	-	.	Ledus.S1G108700
Ledus.S1	AUGUSTUS	transcript	10562658	10565397	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	stop_codon	10562655	10562657	.	-	0	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10562658	10562837	0.55	-	0	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10562658	10562837	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	intron	10562838	10562944	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10562945	10563039	0.95	-	2	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10562945	10563039	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	intron	10563040	10563121	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10563122	10563275	1	-	0	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10563122	10563275	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	intron	10563276	10563364	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10563365	10563493	1	-	0	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10563365	10563493	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	intron	10563494	10563582	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10563583	10563673	1	-	1	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10563583	10563673	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	intron	10563674	10563784	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10563785	10564023	0.66	-	0	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10563785	10564023	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	intron	10564024	10564128	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10564129	10564286	0.67	-	2	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10564129	10564286	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	intron	10564287	10564407	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10564408	10564455	0.95	-	2	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10564408	10564455	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	intron	10564456	10564547	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10564548	10564602	1	-	0	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10564548	10564602	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	intron	10564603	10564692	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10564693	10564761	1	-	0	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10564693	10564761	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	intron	10564762	10564855	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10564856	10564962	1	-	2	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10564856	10564962	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	intron	10564963	10565093	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10565094	10565193	1	-	0	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10565094	10565193	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	intron	10565194	10565262	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	CDS	10565263	10565397	0.31	-	0	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	exon	10565263	10565397	.	-	.	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
Ledus.S1	AUGUSTUS	start_codon	10565395	10565397	.	-	0	transcript_id "Ledus.S1G108700.t1"; gene_id "Ledus.S1G108700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4606.t1 is derived from g2043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18112283	18115408	.	-	.	Ledus.S1G202700
Ledus.S1	AUGUSTUS	transcript	18112283	18115408	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	stop_codon	18112280	18112282	.	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18112283	18112293	1	-	2	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18112283	18112293	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18112294	18112505	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18112506	18112584	1	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18112506	18112584	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18112585	18112675	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18112676	18112894	0.93	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18112676	18112894	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18112895	18113006	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18113007	18113126	0.94	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18113007	18113126	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18113127	18113229	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18113230	18113265	0.93	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18113230	18113265	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18113266	18113408	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18113409	18113537	1	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18113409	18113537	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18113538	18113633	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18113634	18113699	1	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18113634	18113699	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18113700	18113816	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18113817	18113879	1	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18113817	18113879	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18113880	18113966	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18113967	18113996	1	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18113967	18113996	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18113997	18114176	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18114177	18114227	1	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18114177	18114227	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18114228	18114405	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18114406	18114489	1	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18114406	18114489	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18114490	18114614	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18114615	18114728	1	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18114615	18114728	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18114729	18114845	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18114846	18114915	1	-	1	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18114846	18114915	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	intron	18114916	18114995	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	CDS	18114996	18115408	0.96	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	exon	18114996	18115408	.	-	.	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
Ledus.S1	AUGUSTUS	start_codon	18115406	18115408	.	-	0	transcript_id "Ledus.S1G202700.t1"; gene_id "Ledus.S1G202700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4056.t1 is derived from g1492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14368598	14369429	.	-	.	Ledus.S1G147700
Ledus.S1	AUGUSTUS	transcript	14368598	14369429	.	-	.	transcript_id "Ledus.S1G147700.t1"; gene_id "Ledus.S1G147700"
Ledus.S1	AUGUSTUS	stop_codon	14368595	14368597	.	-	0	transcript_id "Ledus.S1G147700.t1"; gene_id "Ledus.S1G147700"
Ledus.S1	AUGUSTUS	CDS	14368598	14368768	1	-	0	transcript_id "Ledus.S1G147700.t1"; gene_id "Ledus.S1G147700"
Ledus.S1	AUGUSTUS	exon	14368598	14368768	.	-	.	transcript_id "Ledus.S1G147700.t1"; gene_id "Ledus.S1G147700"
Ledus.S1	AUGUSTUS	intron	14368769	14368886	.	-	.	transcript_id "Ledus.S1G147700.t1"; gene_id "Ledus.S1G147700"
Ledus.S1	AUGUSTUS	CDS	14368887	14369072	0.83	-	0	transcript_id "Ledus.S1G147700.t1"; gene_id "Ledus.S1G147700"
Ledus.S1	AUGUSTUS	exon	14368887	14369072	.	-	.	transcript_id "Ledus.S1G147700.t1"; gene_id "Ledus.S1G147700"
Ledus.S1	AUGUSTUS	intron	14369073	14369165	.	-	.	transcript_id "Ledus.S1G147700.t1"; gene_id "Ledus.S1G147700"
Ledus.S1	AUGUSTUS	CDS	14369166	14369429	0.66	-	0	transcript_id "Ledus.S1G147700.t1"; gene_id "Ledus.S1G147700"
Ledus.S1	AUGUSTUS	exon	14369166	14369429	.	-	.	transcript_id "Ledus.S1G147700.t1"; gene_id "Ledus.S1G147700"
Ledus.S1	AUGUSTUS	start_codon	14369427	14369429	.	-	0	transcript_id "Ledus.S1G147700.t1"; gene_id "Ledus.S1G147700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg419.t1 is derived from g7280.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2345358	2345659	.	-	.	Ledus.S2G030100
Ledus.S2	AUGUSTUS	transcript	2345358	2345659	.	-	.	transcript_id "Ledus.S2G030100.t1"; gene_id "Ledus.S2G030100"
Ledus.S2	AUGUSTUS	stop_codon	2345355	2345357	.	-	0	transcript_id "Ledus.S2G030100.t1"; gene_id "Ledus.S2G030100"
Ledus.S2	AUGUSTUS	CDS	2345358	2345553	0.61	-	1	transcript_id "Ledus.S2G030100.t1"; gene_id "Ledus.S2G030100"
Ledus.S2	AUGUSTUS	exon	2345358	2345553	.	-	.	transcript_id "Ledus.S2G030100.t1"; gene_id "Ledus.S2G030100"
Ledus.S2	AUGUSTUS	intron	2345554	2345651	.	-	.	transcript_id "Ledus.S2G030100.t1"; gene_id "Ledus.S2G030100"
Ledus.S2	AUGUSTUS	CDS	2345652	2345659	0.98	-	0	transcript_id "Ledus.S2G030100.t1"; gene_id "Ledus.S2G030100"
Ledus.S2	AUGUSTUS	exon	2345652	2345659	.	-	.	transcript_id "Ledus.S2G030100.t1"; gene_id "Ledus.S2G030100"
Ledus.S2	AUGUSTUS	start_codon	2345657	2345659	.	-	0	transcript_id "Ledus.S2G030100.t1"; gene_id "Ledus.S2G030100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7454.t1 is derived from g12125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2839518	2839817	.	+	.	Ledus.S5G023200
Ledus.S5	AUGUSTUS	transcript	2839518	2839817	.	+	.	transcript_id "Ledus.S5G023200.t1"; gene_id "Ledus.S5G023200"
Ledus.S5	AUGUSTUS	start_codon	2839518	2839520	.	+	0	transcript_id "Ledus.S5G023200.t1"; gene_id "Ledus.S5G023200"
Ledus.S5	AUGUSTUS	CDS	2839518	2839817	0.69	+	0	transcript_id "Ledus.S5G023200.t1"; gene_id "Ledus.S5G023200"
Ledus.S5	AUGUSTUS	exon	2839518	2839817	.	+	.	transcript_id "Ledus.S5G023200.t1"; gene_id "Ledus.S5G023200"
Ledus.S5	AUGUSTUS	stop_codon	2839818	2839820	.	+	0	transcript_id "Ledus.S5G023200.t1"; gene_id "Ledus.S5G023200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4100.t1 is derived from g1536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14681405	14688733	.	-	.	Ledus.S1G152100
Ledus.S1	AUGUSTUS	transcript	14684757	14688733	.	-	.	transcript_id "Ledus.S1G152100.t1"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	stop_codon	14684754	14684756	.	-	0	transcript_id "Ledus.S1G152100.t1"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	CDS	14684757	14684788	0.86	-	2	transcript_id "Ledus.S1G152100.t1"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	exon	14684757	14684788	.	-	.	transcript_id "Ledus.S1G152100.t1"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	intron	14684789	14684889	.	-	.	transcript_id "Ledus.S1G152100.t1"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	CDS	14684890	14688733	0.69	-	0	transcript_id "Ledus.S1G152100.t1"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	exon	14684890	14688733	.	-	.	transcript_id "Ledus.S1G152100.t1"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	start_codon	14688731	14688733	.	-	0	transcript_id "Ledus.S1G152100.t1"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	transcript	14681405	14688733	.	-	.	transcript_id "Ledus.S1G152100.t2"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	stop_codon	14681402	14681404	.	-	0	transcript_id "Ledus.S1G152100.t2"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	CDS	14681405	14688733	0.71	-	0	transcript_id "Ledus.S1G152100.t2"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	exon	14681405	14688733	.	-	.	transcript_id "Ledus.S1G152100.t2"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	start_codon	14688731	14688733	.	-	0	transcript_id "Ledus.S1G152100.t2"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	transcript	14681405	14685163	.	-	.	transcript_id "Ledus.S1G152100.t3"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	stop_codon	14681402	14681404	.	-	0	transcript_id "Ledus.S1G152100.t3"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	CDS	14681405	14685163	0.67	-	0	transcript_id "Ledus.S1G152100.t3"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	exon	14681405	14685163	.	-	.	transcript_id "Ledus.S1G152100.t3"; gene_id "Ledus.S1G152100"
Ledus.S1	AUGUSTUS	start_codon	14685161	14685163	.	-	0	transcript_id "Ledus.S1G152100.t3"; gene_id "Ledus.S1G152100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11701.t1 is derived from g5320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6072960	6076245	.	+	.	Ledus.S4G085700
Ledus.S4	AUGUSTUS	transcript	6072960	6076245	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	start_codon	6072960	6072962	.	+	0	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	CDS	6072960	6073031	0.96	+	0	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	exon	6072960	6073031	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	intron	6073032	6073113	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	CDS	6073114	6073220	1	+	0	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	exon	6073114	6073220	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	intron	6073221	6073305	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	CDS	6073306	6073403	1	+	1	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	exon	6073306	6073403	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	intron	6073404	6073506	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	CDS	6073507	6073671	0.9	+	2	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	exon	6073507	6073671	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	intron	6073672	6073760	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	CDS	6073761	6073872	0.99	+	2	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	exon	6073761	6073872	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	intron	6073873	6073979	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	CDS	6073980	6074547	1	+	1	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	exon	6073980	6074547	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	intron	6074548	6074634	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	CDS	6074635	6074729	0.97	+	0	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	exon	6074635	6074729	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	intron	6074730	6074835	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	CDS	6074836	6075081	0.98	+	1	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	exon	6074836	6075081	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	intron	6075082	6075165	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	CDS	6075166	6075280	1	+	1	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	exon	6075166	6075280	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	intron	6075281	6075370	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	CDS	6075371	6075578	1	+	0	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	exon	6075371	6075578	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	intron	6075579	6075709	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	CDS	6075710	6076245	0.94	+	2	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	exon	6075710	6076245	.	+	.	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
Ledus.S4	AUGUSTUS	stop_codon	6076246	6076248	.	+	0	transcript_id "Ledus.S4G085700.t1"; gene_id "Ledus.S4G085700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10239.t1 is derived from g11269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13730004	13731344	.	-	.	Ledus.S3G171600
Ledus.S3	AUGUSTUS	transcript	13730004	13731344	.	-	.	transcript_id "Ledus.S3G171600.t1"; gene_id "Ledus.S3G171600"
Ledus.S3	AUGUSTUS	stop_codon	13730001	13730003	.	-	0	transcript_id "Ledus.S3G171600.t1"; gene_id "Ledus.S3G171600"
Ledus.S3	AUGUSTUS	CDS	13730004	13730984	1	-	0	transcript_id "Ledus.S3G171600.t1"; gene_id "Ledus.S3G171600"
Ledus.S3	AUGUSTUS	exon	13730004	13730984	.	-	.	transcript_id "Ledus.S3G171600.t1"; gene_id "Ledus.S3G171600"
Ledus.S3	AUGUSTUS	intron	13730985	13731056	.	-	.	transcript_id "Ledus.S3G171600.t1"; gene_id "Ledus.S3G171600"
Ledus.S3	AUGUSTUS	CDS	13731057	13731106	1	-	2	transcript_id "Ledus.S3G171600.t1"; gene_id "Ledus.S3G171600"
Ledus.S3	AUGUSTUS	exon	13731057	13731106	.	-	.	transcript_id "Ledus.S3G171600.t1"; gene_id "Ledus.S3G171600"
Ledus.S3	AUGUSTUS	intron	13731107	13731184	.	-	.	transcript_id "Ledus.S3G171600.t1"; gene_id "Ledus.S3G171600"
Ledus.S3	AUGUSTUS	CDS	13731185	13731344	1	-	0	transcript_id "Ledus.S3G171600.t1"; gene_id "Ledus.S3G171600"
Ledus.S3	AUGUSTUS	exon	13731185	13731344	.	-	.	transcript_id "Ledus.S3G171600.t1"; gene_id "Ledus.S3G171600"
Ledus.S3	AUGUSTUS	start_codon	13731342	13731344	.	-	0	transcript_id "Ledus.S3G171600.t1"; gene_id "Ledus.S3G171600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5309.t1 is derived from g2748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23249212	23252048	.	+	.	Ledus.S1G273000
Ledus.S1	AUGUSTUS	transcript	23249212	23252048	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	start_codon	23249212	23249214	.	+	0	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	CDS	23249212	23249389	0.94	+	0	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	exon	23249212	23249389	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	intron	23249390	23249787	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	CDS	23249788	23249996	0.99	+	2	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	exon	23249788	23249996	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	intron	23249997	23250076	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	CDS	23250077	23250171	1	+	0	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	exon	23250077	23250171	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	intron	23250172	23250271	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	CDS	23250272	23250386	1	+	1	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	exon	23250272	23250386	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	intron	23250387	23250471	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	CDS	23250472	23250680	1	+	0	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	exon	23250472	23250680	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	intron	23250681	23250759	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	CDS	23250760	23250909	1	+	1	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	exon	23250760	23250909	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	intron	23250910	23250996	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	CDS	23250997	23251117	1	+	1	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	exon	23250997	23251117	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	intron	23251118	23251195	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	CDS	23251196	23251425	1	+	0	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	exon	23251196	23251425	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	intron	23251426	23251606	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	CDS	23251607	23252048	1	+	1	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	exon	23251607	23252048	.	+	.	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
Ledus.S1	AUGUSTUS	stop_codon	23252049	23252051	.	+	0	transcript_id "Ledus.S1G273000.t1"; gene_id "Ledus.S1G273000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8469.t1 is derived from g13141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12053953	12058325	.	-	.	Ledus.S5G124700
Ledus.S5	AUGUSTUS	transcript	12053953	12058325	.	-	.	transcript_id "Ledus.S5G124700.t1"; gene_id "Ledus.S5G124700"
Ledus.S5	AUGUSTUS	stop_codon	12053950	12053952	.	-	0	transcript_id "Ledus.S5G124700.t1"; gene_id "Ledus.S5G124700"
Ledus.S5	AUGUSTUS	CDS	12053953	12054138	0.75	-	0	transcript_id "Ledus.S5G124700.t1"; gene_id "Ledus.S5G124700"
Ledus.S5	AUGUSTUS	exon	12053953	12054138	.	-	.	transcript_id "Ledus.S5G124700.t1"; gene_id "Ledus.S5G124700"
Ledus.S5	AUGUSTUS	intron	12054139	12054523	.	-	.	transcript_id "Ledus.S5G124700.t1"; gene_id "Ledus.S5G124700"
Ledus.S5	AUGUSTUS	CDS	12054524	12054604	0.67	-	0	transcript_id "Ledus.S5G124700.t1"; gene_id "Ledus.S5G124700"
Ledus.S5	AUGUSTUS	exon	12054524	12054604	.	-	.	transcript_id "Ledus.S5G124700.t1"; gene_id "Ledus.S5G124700"
Ledus.S5	AUGUSTUS	intron	12054605	12055025	.	-	.	transcript_id "Ledus.S5G124700.t1"; gene_id "Ledus.S5G124700"
Ledus.S5	AUGUSTUS	CDS	12055026	12058325	0.4	-	0	transcript_id "Ledus.S5G124700.t1"; gene_id "Ledus.S5G124700"
Ledus.S5	AUGUSTUS	exon	12055026	12058325	.	-	.	transcript_id "Ledus.S5G124700.t1"; gene_id "Ledus.S5G124700"
Ledus.S5	AUGUSTUS	start_codon	12058323	12058325	.	-	0	transcript_id "Ledus.S5G124700.t1"; gene_id "Ledus.S5G124700"
# This transcript jg8880.t2 is derived from g9910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8881.t1 is derived from g9911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2796422	2798144	.	-	.	Ledus.S3G035800
Ledus.S3	AUGUSTUS	transcript	2796422	2798144	.	-	.	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	stop_codon	2796419	2796421	.	-	0	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	CDS	2796422	2796557	0.63	-	1	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	exon	2796422	2796557	.	-	.	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	intron	2796558	2796727	.	-	.	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	CDS	2796728	2796815	0.76	-	2	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	exon	2796728	2796815	.	-	.	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	intron	2796816	2797231	.	-	.	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	CDS	2797232	2797748	0.64	-	0	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	exon	2797232	2797748	.	-	.	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	intron	2797749	2797826	.	-	.	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	CDS	2797827	2798009	0.55	-	0	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	exon	2797827	2798009	.	-	.	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	intron	2798010	2798099	.	-	.	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	CDS	2798100	2798144	0.55	-	0	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	exon	2798100	2798144	.	-	.	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
Ledus.S3	AUGUSTUS	start_codon	2798142	2798144	.	-	0	transcript_id "Ledus.S3G035800.t1"; gene_id "Ledus.S3G035800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2251.t1 is derived from g9114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16485329	16486667	.	+	.	Ledus.S2G213300
Ledus.S2	AUGUSTUS	transcript	16485329	16486667	.	+	.	transcript_id "Ledus.S2G213300.t1"; gene_id "Ledus.S2G213300"
Ledus.S2	AUGUSTUS	start_codon	16485329	16485331	.	+	0	transcript_id "Ledus.S2G213300.t1"; gene_id "Ledus.S2G213300"
Ledus.S2	AUGUSTUS	CDS	16485329	16485490	0.87	+	0	transcript_id "Ledus.S2G213300.t1"; gene_id "Ledus.S2G213300"
Ledus.S2	AUGUSTUS	exon	16485329	16485490	.	+	.	transcript_id "Ledus.S2G213300.t1"; gene_id "Ledus.S2G213300"
Ledus.S2	AUGUSTUS	intron	16485491	16486053	.	+	.	transcript_id "Ledus.S2G213300.t1"; gene_id "Ledus.S2G213300"
Ledus.S2	AUGUSTUS	CDS	16486054	16486150	0.7	+	0	transcript_id "Ledus.S2G213300.t1"; gene_id "Ledus.S2G213300"
Ledus.S2	AUGUSTUS	exon	16486054	16486150	.	+	.	transcript_id "Ledus.S2G213300.t1"; gene_id "Ledus.S2G213300"
Ledus.S2	AUGUSTUS	intron	16486151	16486533	.	+	.	transcript_id "Ledus.S2G213300.t1"; gene_id "Ledus.S2G213300"
Ledus.S2	AUGUSTUS	CDS	16486534	16486667	1	+	2	transcript_id "Ledus.S2G213300.t1"; gene_id "Ledus.S2G213300"
Ledus.S2	AUGUSTUS	exon	16486534	16486667	.	+	.	transcript_id "Ledus.S2G213300.t1"; gene_id "Ledus.S2G213300"
Ledus.S2	AUGUSTUS	stop_codon	16486668	16486670	.	+	0	transcript_id "Ledus.S2G213300.t1"; gene_id "Ledus.S2G213300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1613.t1 is derived from g8474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11390500	11390883	.	-	.	Ledus.S2G149500
Ledus.S2	AUGUSTUS	transcript	11390500	11390883	.	-	.	transcript_id "Ledus.S2G149500.t1"; gene_id "Ledus.S2G149500"
Ledus.S2	AUGUSTUS	stop_codon	11390497	11390499	.	-	0	transcript_id "Ledus.S2G149500.t1"; gene_id "Ledus.S2G149500"
Ledus.S2	AUGUSTUS	CDS	11390500	11390883	0.5	-	0	transcript_id "Ledus.S2G149500.t1"; gene_id "Ledus.S2G149500"
Ledus.S2	AUGUSTUS	exon	11390500	11390883	.	-	.	transcript_id "Ledus.S2G149500.t1"; gene_id "Ledus.S2G149500"
Ledus.S2	AUGUSTUS	start_codon	11390881	11390883	.	-	0	transcript_id "Ledus.S2G149500.t1"; gene_id "Ledus.S2G149500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1761.t1 is derived from g8623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12394341	12396764	.	-	.	Ledus.S2G164300
Ledus.S2	AUGUSTUS	transcript	12394341	12396764	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	stop_codon	12394338	12394340	.	-	0	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	CDS	12394341	12394352	1	-	0	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	exon	12394341	12394352	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	intron	12394353	12394497	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	CDS	12394498	12394701	1	-	0	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	exon	12394498	12394701	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	intron	12394702	12394842	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	CDS	12394843	12394974	0.94	-	0	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	exon	12394843	12394974	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	intron	12394975	12395088	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	CDS	12395089	12395385	0.92	-	0	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	exon	12395089	12395385	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	intron	12395386	12395507	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	CDS	12395508	12395630	0.93	-	0	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	exon	12395508	12395630	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	intron	12395631	12395731	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	CDS	12395732	12395946	0.96	-	2	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	exon	12395732	12395946	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	intron	12395947	12396080	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	CDS	12396081	12396109	1	-	1	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	exon	12396081	12396109	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	intron	12396110	12396214	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	CDS	12396215	12396540	1	-	0	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	exon	12396215	12396540	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	intron	12396541	12396620	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	CDS	12396621	12396764	0.94	-	0	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	exon	12396621	12396764	.	-	.	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
Ledus.S2	AUGUSTUS	start_codon	12396762	12396764	.	-	0	transcript_id "Ledus.S2G164300.t1"; gene_id "Ledus.S2G164300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11851.t1 is derived from g5470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7303403	7305229	.	+	.	Ledus.S4G100700
Ledus.S4	AUGUSTUS	transcript	7303403	7305229	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	start_codon	7303403	7303405	.	+	0	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	CDS	7303403	7303537	0.49	+	0	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	exon	7303403	7303537	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	intron	7303538	7303792	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	CDS	7303793	7303886	0.26	+	0	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	exon	7303793	7303886	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	intron	7303887	7303997	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	CDS	7303998	7304023	0.99	+	2	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	exon	7303998	7304023	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	intron	7304024	7304218	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	CDS	7304219	7304265	0.61	+	0	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	exon	7304219	7304265	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	intron	7304266	7304371	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	CDS	7304372	7304492	0.61	+	1	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	exon	7304372	7304492	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	intron	7304493	7304576	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	CDS	7304577	7304665	1	+	0	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	exon	7304577	7304665	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	intron	7304666	7304787	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	CDS	7304788	7304860	1	+	1	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	exon	7304788	7304860	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	intron	7304861	7304956	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	CDS	7304957	7305061	1	+	0	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	exon	7304957	7305061	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	intron	7305062	7305148	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	CDS	7305149	7305229	1	+	0	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	exon	7305149	7305229	.	+	.	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
Ledus.S4	AUGUSTUS	stop_codon	7305230	7305232	.	+	0	transcript_id "Ledus.S4G100700.t1"; gene_id "Ledus.S4G100700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12217.t1 is derived from g5836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10422974	10425951	.	+	.	Ledus.S4G137300
Ledus.S4	AUGUSTUS	transcript	10423003	10425951	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	start_codon	10423003	10423005	.	+	0	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10423003	10423167	0.74	+	0	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10423003	10423167	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10423168	10423246	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10423247	10423363	0.99	+	0	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10423247	10423363	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10423364	10423448	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10423449	10423696	0.98	+	0	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10423449	10423696	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10423697	10423771	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10423772	10423955	1	+	1	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10423772	10423955	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10423956	10424025	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10424026	10424156	0.83	+	0	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10424026	10424156	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10424157	10424894	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10424895	10424970	0.6	+	1	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10424895	10424970	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10424971	10425260	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10425261	10425344	0.63	+	0	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10425261	10425344	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10425345	10425457	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10425458	10425512	0.62	+	0	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10425458	10425512	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10425513	10425590	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10425591	10425643	0.75	+	2	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10425591	10425643	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10425644	10425858	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10425859	10425951	0.6	+	0	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10425859	10425951	.	+	.	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	stop_codon	10425952	10425954	.	+	0	transcript_id "Ledus.S4G137300.t1"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	transcript	10422974	10425951	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	start_codon	10422974	10422976	.	+	0	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10422974	10423167	0.48	+	0	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10422974	10423167	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10423168	10423230	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10423231	10423363	0.97	+	1	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10423231	10423363	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10423364	10423448	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10423449	10423696	0.99	+	0	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10423449	10423696	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10423697	10423771	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10423772	10423955	1	+	1	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10423772	10423955	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10423956	10424025	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10424026	10424156	0.87	+	0	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10424026	10424156	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10424157	10424894	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10424895	10424970	0.6	+	1	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10424895	10424970	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10424971	10425260	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10425261	10425344	0.67	+	0	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10425261	10425344	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10425345	10425457	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10425458	10425512	0.67	+	0	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10425458	10425512	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10425513	10425590	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10425591	10425643	0.64	+	2	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10425591	10425643	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	intron	10425644	10425858	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	CDS	10425859	10425951	0.44	+	0	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	exon	10425859	10425951	.	+	.	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
Ledus.S4	AUGUSTUS	stop_codon	10425952	10425954	.	+	0	transcript_id "Ledus.S4G137300.t2"; gene_id "Ledus.S4G137300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1575.t1 is derived from g8436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11029801	11030354	.	+	.	Ledus.S2G145700
Ledus.S2	AUGUSTUS	transcript	11029801	11030354	.	+	.	transcript_id "Ledus.S2G145700.t1"; gene_id "Ledus.S2G145700"
Ledus.S2	AUGUSTUS	start_codon	11029801	11029803	.	+	0	transcript_id "Ledus.S2G145700.t1"; gene_id "Ledus.S2G145700"
Ledus.S2	AUGUSTUS	CDS	11029801	11030034	0.39	+	0	transcript_id "Ledus.S2G145700.t1"; gene_id "Ledus.S2G145700"
Ledus.S2	AUGUSTUS	exon	11029801	11030034	.	+	.	transcript_id "Ledus.S2G145700.t1"; gene_id "Ledus.S2G145700"
Ledus.S2	AUGUSTUS	intron	11030035	11030108	.	+	.	transcript_id "Ledus.S2G145700.t1"; gene_id "Ledus.S2G145700"
Ledus.S2	AUGUSTUS	CDS	11030109	11030131	0.61	+	0	transcript_id "Ledus.S2G145700.t1"; gene_id "Ledus.S2G145700"
Ledus.S2	AUGUSTUS	exon	11030109	11030131	.	+	.	transcript_id "Ledus.S2G145700.t1"; gene_id "Ledus.S2G145700"
Ledus.S2	AUGUSTUS	intron	11030132	11030296	.	+	.	transcript_id "Ledus.S2G145700.t1"; gene_id "Ledus.S2G145700"
Ledus.S2	AUGUSTUS	CDS	11030297	11030354	0.59	+	1	transcript_id "Ledus.S2G145700.t1"; gene_id "Ledus.S2G145700"
Ledus.S2	AUGUSTUS	exon	11030297	11030354	.	+	.	transcript_id "Ledus.S2G145700.t1"; gene_id "Ledus.S2G145700"
Ledus.S2	AUGUSTUS	stop_codon	11030355	11030357	.	+	0	transcript_id "Ledus.S2G145700.t1"; gene_id "Ledus.S2G145700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9835.t1 is derived from g10865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10410693	10411374	.	-	.	Ledus.S3G131200
Ledus.S3	AUGUSTUS	transcript	10410693	10411374	.	-	.	transcript_id "Ledus.S3G131200.t1"; gene_id "Ledus.S3G131200"
Ledus.S3	AUGUSTUS	stop_codon	10410690	10410692	.	-	0	transcript_id "Ledus.S3G131200.t1"; gene_id "Ledus.S3G131200"
Ledus.S3	AUGUSTUS	CDS	10410693	10410947	0.4	-	0	transcript_id "Ledus.S3G131200.t1"; gene_id "Ledus.S3G131200"
Ledus.S3	AUGUSTUS	exon	10410693	10410947	.	-	.	transcript_id "Ledus.S3G131200.t1"; gene_id "Ledus.S3G131200"
Ledus.S3	AUGUSTUS	intron	10410948	10411134	.	-	.	transcript_id "Ledus.S3G131200.t1"; gene_id "Ledus.S3G131200"
Ledus.S3	AUGUSTUS	CDS	10411135	10411374	0.64	-	0	transcript_id "Ledus.S3G131200.t1"; gene_id "Ledus.S3G131200"
Ledus.S3	AUGUSTUS	exon	10411135	10411374	.	-	.	transcript_id "Ledus.S3G131200.t1"; gene_id "Ledus.S3G131200"
Ledus.S3	AUGUSTUS	start_codon	10411372	10411374	.	-	0	transcript_id "Ledus.S3G131200.t1"; gene_id "Ledus.S3G131200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5516.t1 is derived from g2955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24736348	24738260	.	+	.	Ledus.S1G293700
Ledus.S1	AUGUSTUS	transcript	24736348	24738260	.	+	.	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	start_codon	24736348	24736350	.	+	0	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	CDS	24736348	24737283	0.35	+	0	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	exon	24736348	24737283	.	+	.	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	intron	24737284	24737364	.	+	.	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	CDS	24737365	24737565	1	+	0	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	exon	24737365	24737565	.	+	.	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	intron	24737566	24737689	.	+	.	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	CDS	24737690	24737885	1	+	0	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	exon	24737690	24737885	.	+	.	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	intron	24737886	24738063	.	+	.	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	CDS	24738064	24738260	1	+	2	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	exon	24738064	24738260	.	+	.	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
Ledus.S1	AUGUSTUS	stop_codon	24738261	24738263	.	+	0	transcript_id "Ledus.S1G293700.t1"; gene_id "Ledus.S1G293700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8614.t1 is derived from g9644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	660535	663278	.	+	.	Ledus.S3G009100
Ledus.S3	AUGUSTUS	transcript	660535	663278	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	start_codon	660535	660537	.	+	0	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	660535	660636	0.96	+	0	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	660535	660636	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	intron	660637	660729	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	660730	660786	1	+	0	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	660730	660786	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	intron	660787	660908	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	660909	661085	0.89	+	0	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	660909	661085	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	intron	661086	661184	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	661185	661271	1	+	0	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	661185	661271	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	intron	661272	661362	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	661363	661445	1	+	0	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	661363	661445	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	intron	661446	661541	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	661542	661656	1	+	1	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	661542	661656	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	intron	661657	661749	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	661750	661864	1	+	0	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	661750	661864	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	intron	661865	661962	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	661963	662040	1	+	2	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	661963	662040	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	intron	662041	662154	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	662155	662268	0.76	+	2	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	662155	662268	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	intron	662269	662437	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	662438	662746	0.66	+	2	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	662438	662746	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	intron	662747	662838	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	662839	662897	1	+	2	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	662839	662897	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	intron	662898	662984	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	662985	663095	1	+	0	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	662985	663095	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	intron	663096	663191	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	CDS	663192	663278	0.74	+	0	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	exon	663192	663278	.	+	.	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
Ledus.S3	AUGUSTUS	stop_codon	663279	663281	.	+	0	transcript_id "Ledus.S3G009100.t1"; gene_id "Ledus.S3G009100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10847.t1 is derived from g4465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	38363	39965	.	-	.	Ledus.S4G000300
Ledus.S4	AUGUSTUS	transcript	38363	39965	.	-	.	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	stop_codon	38360	38362	.	-	0	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	CDS	38363	38581	1	-	0	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	exon	38363	38581	.	-	.	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	intron	38582	38666	.	-	.	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	CDS	38667	38943	1	-	1	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	exon	38667	38943	.	-	.	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	intron	38944	39088	.	-	.	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	CDS	39089	39281	1	-	2	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	exon	39089	39281	.	-	.	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	intron	39282	39433	.	-	.	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	CDS	39434	39514	1	-	2	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	exon	39434	39514	.	-	.	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	intron	39515	39582	.	-	.	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	CDS	39583	39622	1	-	0	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	exon	39583	39622	.	-	.	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	intron	39623	39923	.	-	.	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	CDS	39924	39965	1	-	0	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	exon	39924	39965	.	-	.	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
Ledus.S4	AUGUSTUS	start_codon	39963	39965	.	-	0	transcript_id "Ledus.S4G000300.t1"; gene_id "Ledus.S4G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11280.t1 is derived from g4898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3301931	3303210	.	+	.	Ledus.S4G043600
Ledus.S4	AUGUSTUS	transcript	3301931	3303210	.	+	.	transcript_id "Ledus.S4G043600.t1"; gene_id "Ledus.S4G043600"
Ledus.S4	AUGUSTUS	start_codon	3301931	3301933	.	+	0	transcript_id "Ledus.S4G043600.t1"; gene_id "Ledus.S4G043600"
Ledus.S4	AUGUSTUS	CDS	3301931	3302709	0.85	+	0	transcript_id "Ledus.S4G043600.t1"; gene_id "Ledus.S4G043600"
Ledus.S4	AUGUSTUS	exon	3301931	3302709	.	+	.	transcript_id "Ledus.S4G043600.t1"; gene_id "Ledus.S4G043600"
Ledus.S4	AUGUSTUS	intron	3302710	3302799	.	+	.	transcript_id "Ledus.S4G043600.t1"; gene_id "Ledus.S4G043600"
Ledus.S4	AUGUSTUS	CDS	3302800	3302932	1	+	1	transcript_id "Ledus.S4G043600.t1"; gene_id "Ledus.S4G043600"
Ledus.S4	AUGUSTUS	exon	3302800	3302932	.	+	.	transcript_id "Ledus.S4G043600.t1"; gene_id "Ledus.S4G043600"
Ledus.S4	AUGUSTUS	intron	3302933	3303015	.	+	.	transcript_id "Ledus.S4G043600.t1"; gene_id "Ledus.S4G043600"
Ledus.S4	AUGUSTUS	CDS	3303016	3303210	1	+	0	transcript_id "Ledus.S4G043600.t1"; gene_id "Ledus.S4G043600"
Ledus.S4	AUGUSTUS	exon	3303016	3303210	.	+	.	transcript_id "Ledus.S4G043600.t1"; gene_id "Ledus.S4G043600"
Ledus.S4	AUGUSTUS	stop_codon	3303211	3303213	.	+	0	transcript_id "Ledus.S4G043600.t1"; gene_id "Ledus.S4G043600"
# This transcript jg8958.t2 is derived from g9988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8959.t1 is derived from g9989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3490131	3491428	.	-	.	Ledus.S3G043600
Ledus.S3	AUGUSTUS	transcript	3490131	3491428	.	-	.	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	stop_codon	3490128	3490130	.	-	0	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	CDS	3490131	3490531	1	-	2	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	exon	3490131	3490531	.	-	.	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	intron	3490532	3490617	.	-	.	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	CDS	3490618	3490799	1	-	1	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	exon	3490618	3490799	.	-	.	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	intron	3490800	3490868	.	-	.	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	CDS	3490869	3491071	1	-	0	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	exon	3490869	3491071	.	-	.	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	intron	3491072	3491146	.	-	.	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	CDS	3491147	3491428	0.47	-	0	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	exon	3491147	3491428	.	-	.	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
Ledus.S3	AUGUSTUS	start_codon	3491426	3491428	.	-	0	transcript_id "Ledus.S3G043600.t1"; gene_id "Ledus.S3G043600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2151.t1 is derived from g9014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15303088	15305142	.	-	.	Ledus.S2G203300
Ledus.S2	AUGUSTUS	transcript	15303088	15305142	.	-	.	transcript_id "Ledus.S2G203300.t1"; gene_id "Ledus.S2G203300"
Ledus.S2	AUGUSTUS	stop_codon	15303085	15303087	.	-	0	transcript_id "Ledus.S2G203300.t1"; gene_id "Ledus.S2G203300"
Ledus.S2	AUGUSTUS	CDS	15303088	15305142	0.99	-	0	transcript_id "Ledus.S2G203300.t1"; gene_id "Ledus.S2G203300"
Ledus.S2	AUGUSTUS	exon	15303088	15305142	.	-	.	transcript_id "Ledus.S2G203300.t1"; gene_id "Ledus.S2G203300"
Ledus.S2	AUGUSTUS	start_codon	15305140	15305142	.	-	0	transcript_id "Ledus.S2G203300.t1"; gene_id "Ledus.S2G203300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4413.t1 is derived from g1849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16953683	16954363	.	+	.	Ledus.S1G183400
Ledus.S1	AUGUSTUS	transcript	16953683	16954363	.	+	.	transcript_id "Ledus.S1G183400.t1"; gene_id "Ledus.S1G183400"
Ledus.S1	AUGUSTUS	start_codon	16953683	16953685	.	+	0	transcript_id "Ledus.S1G183400.t1"; gene_id "Ledus.S1G183400"
Ledus.S1	AUGUSTUS	CDS	16953683	16954363	0.8	+	0	transcript_id "Ledus.S1G183400.t1"; gene_id "Ledus.S1G183400"
Ledus.S1	AUGUSTUS	exon	16953683	16954363	.	+	.	transcript_id "Ledus.S1G183400.t1"; gene_id "Ledus.S1G183400"
Ledus.S1	AUGUSTUS	stop_codon	16954364	16954366	.	+	0	transcript_id "Ledus.S1G183400.t1"; gene_id "Ledus.S1G183400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10931.t1 is derived from g4549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	656204	658987	.	+	.	Ledus.S4G008700
Ledus.S4	AUGUSTUS	transcript	656204	658987	.	+	.	transcript_id "Ledus.S4G008700.t1"; gene_id "Ledus.S4G008700"
Ledus.S4	AUGUSTUS	start_codon	656204	656206	.	+	0	transcript_id "Ledus.S4G008700.t1"; gene_id "Ledus.S4G008700"
Ledus.S4	AUGUSTUS	CDS	656204	657423	0.93	+	0	transcript_id "Ledus.S4G008700.t1"; gene_id "Ledus.S4G008700"
Ledus.S4	AUGUSTUS	exon	656204	657423	.	+	.	transcript_id "Ledus.S4G008700.t1"; gene_id "Ledus.S4G008700"
Ledus.S4	AUGUSTUS	intron	657424	657852	.	+	.	transcript_id "Ledus.S4G008700.t1"; gene_id "Ledus.S4G008700"
Ledus.S4	AUGUSTUS	CDS	657853	658688	0.71	+	1	transcript_id "Ledus.S4G008700.t1"; gene_id "Ledus.S4G008700"
Ledus.S4	AUGUSTUS	exon	657853	658688	.	+	.	transcript_id "Ledus.S4G008700.t1"; gene_id "Ledus.S4G008700"
Ledus.S4	AUGUSTUS	intron	658689	658964	.	+	.	transcript_id "Ledus.S4G008700.t1"; gene_id "Ledus.S4G008700"
Ledus.S4	AUGUSTUS	CDS	658965	658987	0.44	+	2	transcript_id "Ledus.S4G008700.t1"; gene_id "Ledus.S4G008700"
Ledus.S4	AUGUSTUS	exon	658965	658987	.	+	.	transcript_id "Ledus.S4G008700.t1"; gene_id "Ledus.S4G008700"
Ledus.S4	AUGUSTUS	stop_codon	658988	658990	.	+	0	transcript_id "Ledus.S4G008700.t1"; gene_id "Ledus.S4G008700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5377.t1 is derived from g2816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23918909	23919394	.	+	.	Ledus.S1G279800
Ledus.S1	AUGUSTUS	transcript	23918909	23919394	.	+	.	transcript_id "Ledus.S1G279800.t1"; gene_id "Ledus.S1G279800"
Ledus.S1	AUGUSTUS	start_codon	23918909	23918911	.	+	0	transcript_id "Ledus.S1G279800.t1"; gene_id "Ledus.S1G279800"
Ledus.S1	AUGUSTUS	CDS	23918909	23919394	0.76	+	0	transcript_id "Ledus.S1G279800.t1"; gene_id "Ledus.S1G279800"
Ledus.S1	AUGUSTUS	exon	23918909	23919394	.	+	.	transcript_id "Ledus.S1G279800.t1"; gene_id "Ledus.S1G279800"
Ledus.S1	AUGUSTUS	stop_codon	23919395	23919397	.	+	0	transcript_id "Ledus.S1G279800.t1"; gene_id "Ledus.S1G279800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg877.t1 is derived from g7738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5936371	5938023	.	-	.	Ledus.S2G075900
Ledus.S2	AUGUSTUS	transcript	5936371	5937303	.	-	.	transcript_id "Ledus.S2G075900.t1"; gene_id "Ledus.S2G075900"
Ledus.S2	AUGUSTUS	stop_codon	5936368	5936370	.	-	0	transcript_id "Ledus.S2G075900.t1"; gene_id "Ledus.S2G075900"
Ledus.S2	AUGUSTUS	CDS	5936371	5937303	0.92	-	0	transcript_id "Ledus.S2G075900.t1"; gene_id "Ledus.S2G075900"
Ledus.S2	AUGUSTUS	exon	5936371	5937303	.	-	.	transcript_id "Ledus.S2G075900.t1"; gene_id "Ledus.S2G075900"
Ledus.S2	AUGUSTUS	start_codon	5937301	5937303	.	-	0	transcript_id "Ledus.S2G075900.t1"; gene_id "Ledus.S2G075900"
Ledus.S2	AUGUSTUS	transcript	5936371	5938023	.	-	.	transcript_id "Ledus.S2G075900.t2"; gene_id "Ledus.S2G075900"
Ledus.S2	AUGUSTUS	stop_codon	5936368	5936370	.	-	0	transcript_id "Ledus.S2G075900.t2"; gene_id "Ledus.S2G075900"
Ledus.S2	AUGUSTUS	CDS	5936371	5938023	0.91	-	0	transcript_id "Ledus.S2G075900.t2"; gene_id "Ledus.S2G075900"
Ledus.S2	AUGUSTUS	exon	5936371	5938023	.	-	.	transcript_id "Ledus.S2G075900.t2"; gene_id "Ledus.S2G075900"
Ledus.S2	AUGUSTUS	start_codon	5938021	5938023	.	-	0	transcript_id "Ledus.S2G075900.t2"; gene_id "Ledus.S2G075900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg6239.t1 is derived from g3682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29804379	29811125	.	-	.	Ledus.S1G366000
Ledus.S1	AUGUSTUS	transcript	29804379	29808382	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	stop_codon	29804376	29804378	.	-	0	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29804379	29804489	1	-	0	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29804379	29804489	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29804490	29804610	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29804611	29804688	1	-	0	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29804611	29804688	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29804689	29804784	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29804785	29804881	1	-	1	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29804785	29804881	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29804882	29804973	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29804974	29805128	1	-	0	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29804974	29805128	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29805129	29805235	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29805236	29805331	1	-	0	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29805236	29805331	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29805332	29805475	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29805476	29805537	1	-	2	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29805476	29805537	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29805538	29805682	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29805683	29805755	1	-	0	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29805683	29805755	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29805756	29805920	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29805921	29806002	1	-	1	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29805921	29806002	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806003	29806141	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29806142	29806259	1	-	2	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29806142	29806259	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806260	29806395	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29806396	29806456	1	-	0	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29806396	29806456	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806457	29806604	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29806605	29806669	1	-	2	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29806605	29806669	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806670	29806752	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29806753	29806989	1	-	2	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29806753	29806989	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806990	29807073	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807074	29807162	1	-	1	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807074	29807162	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807163	29807287	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807288	29807340	1	-	0	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807288	29807340	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807341	29807482	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807483	29807627	1	-	1	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807483	29807627	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807628	29807720	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807721	29807790	1	-	2	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807721	29807790	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807791	29807898	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807899	29808093	0.84	-	2	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807899	29808093	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29808094	29808372	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29808373	29808382	0.92	-	0	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29808373	29808382	.	-	.	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	start_codon	29808380	29808382	.	-	0	transcript_id "Ledus.S1G366000.t1"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	transcript	29804379	29808382	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	stop_codon	29804376	29804378	.	-	0	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29804379	29804489	1	-	0	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29804379	29804489	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29804490	29804610	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29804611	29804688	1	-	0	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29804611	29804688	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29804689	29804784	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29804785	29804881	1	-	1	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29804785	29804881	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29804882	29804973	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29804974	29805128	1	-	0	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29804974	29805128	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29805129	29805235	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29805236	29805331	1	-	0	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29805236	29805331	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29805332	29805475	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29805476	29805537	1	-	2	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29805476	29805537	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29805538	29805682	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29805683	29805755	1	-	0	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29805683	29805755	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29805756	29805920	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29805921	29806002	1	-	1	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29805921	29806002	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806003	29806141	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29806142	29806259	1	-	2	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29806142	29806259	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806260	29806395	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29806396	29806456	1	-	0	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29806396	29806456	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806457	29806604	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29806605	29806669	1	-	2	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29806605	29806669	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806670	29806752	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29806753	29806989	1	-	2	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29806753	29806989	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806990	29807073	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807074	29807162	1	-	1	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807074	29807162	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807163	29807287	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807288	29807340	1	-	0	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807288	29807340	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807341	29807443	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807444	29807627	0.95	-	1	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807444	29807627	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807628	29807720	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807721	29807790	1	-	2	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807721	29807790	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807791	29807898	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807899	29808093	0.83	-	2	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807899	29808093	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29808094	29808372	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29808373	29808382	0.95	-	0	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29808373	29808382	.	-	.	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	start_codon	29808380	29808382	.	-	0	transcript_id "Ledus.S1G366000.t2"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	transcript	29809969	29811125	.	-	.	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	stop_codon	29809966	29809968	.	-	0	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29809969	29810002	0.96	-	1	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29809969	29810002	.	-	.	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29810003	29810335	.	-	.	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29810336	29810544	0.98	-	0	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29810336	29810544	.	-	.	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29810545	29810729	.	-	.	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29810730	29810860	1	-	2	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29810730	29810860	.	-	.	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29810861	29810947	.	-	.	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29810948	29811125	0.95	-	0	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29810948	29811125	.	-	.	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	start_codon	29811123	29811125	.	-	0	transcript_id "Ledus.S1G366000.t3"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	transcript	29804379	29811125	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	stop_codon	29804376	29804378	.	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29804379	29804489	1	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29804379	29804489	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29804490	29804610	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29804611	29804688	1	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29804611	29804688	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29804689	29804784	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29804785	29804881	1	-	1	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29804785	29804881	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29804882	29804973	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29804974	29805128	1	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29804974	29805128	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29805129	29805235	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29805236	29805331	1	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29805236	29805331	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29805332	29805475	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29805476	29805537	1	-	2	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29805476	29805537	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29805538	29805682	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29805683	29805755	1	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29805683	29805755	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29805756	29805920	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29805921	29806002	1	-	1	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29805921	29806002	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806003	29806141	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29806142	29806259	1	-	2	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29806142	29806259	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806260	29806395	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29806396	29806456	1	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29806396	29806456	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806457	29806604	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29806605	29806669	1	-	2	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29806605	29806669	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806670	29806752	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29806753	29806989	1	-	2	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29806753	29806989	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29806990	29807073	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807074	29807162	1	-	1	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807074	29807162	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807163	29807287	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807288	29807340	1	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807288	29807340	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807341	29807482	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807483	29807627	0.96	-	1	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807483	29807627	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807628	29807720	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807721	29807790	0.97	-	2	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807721	29807790	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807791	29807898	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29807899	29807956	0.87	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29807899	29807956	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29807957	29808057	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29808058	29808093	0.87	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29808058	29808093	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29808094	29808276	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29808277	29808321	0.99	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29808277	29808321	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29808322	29809122	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29809123	29809164	0.74	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29809123	29809164	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29809165	29809243	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29809244	29809262	0.68	-	1	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29809244	29809262	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29809263	29809345	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29809346	29809350	0.21	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29809346	29809350	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29809351	29809561	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29809562	29809744	0.49	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29809562	29809744	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29809745	29809928	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29809929	29810002	0.65	-	2	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29809929	29810002	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29810003	29810228	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29810229	29810236	0.49	-	1	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29810229	29810236	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29810237	29810335	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29810336	29810544	0.54	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29810336	29810544	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29810545	29810729	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29810730	29810860	1	-	2	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29810730	29810860	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	intron	29810861	29810947	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	CDS	29810948	29811125	0.96	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	exon	29810948	29811125	.	-	.	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
Ledus.S1	AUGUSTUS	start_codon	29811123	29811125	.	-	0	transcript_id "Ledus.S1G366000.t4"; gene_id "Ledus.S1G366000"
# This transcript jg11363.t2 is derived from g4981.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11364.t1 is derived from g4982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3824525	3825904	.	+	.	Ledus.S4G052000
Ledus.S4	AUGUSTUS	transcript	3824525	3825904	.	+	.	transcript_id "Ledus.S4G052000.t1"; gene_id "Ledus.S4G052000"
Ledus.S4	AUGUSTUS	start_codon	3824525	3824527	.	+	0	transcript_id "Ledus.S4G052000.t1"; gene_id "Ledus.S4G052000"
Ledus.S4	AUGUSTUS	CDS	3824525	3825904	0.91	+	0	transcript_id "Ledus.S4G052000.t1"; gene_id "Ledus.S4G052000"
Ledus.S4	AUGUSTUS	exon	3824525	3825904	.	+	.	transcript_id "Ledus.S4G052000.t1"; gene_id "Ledus.S4G052000"
Ledus.S4	AUGUSTUS	stop_codon	3825905	3825907	.	+	0	transcript_id "Ledus.S4G052000.t1"; gene_id "Ledus.S4G052000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1090.t1 is derived from g7951.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7462152	7465376	.	-	.	Ledus.S2G097200
Ledus.S2	AUGUSTUS	transcript	7462152	7465376	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	stop_codon	7462149	7462151	.	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7462152	7462214	1	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7462152	7462214	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7462215	7462310	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7462311	7462502	1	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7462311	7462502	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7462503	7462593	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7462594	7462695	1	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7462594	7462695	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7462696	7462787	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7462788	7462852	1	-	2	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7462788	7462852	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7462853	7463091	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7463092	7463175	1	-	2	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7463092	7463175	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7463176	7463375	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7463376	7463448	1	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7463376	7463448	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7463449	7463535	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7463536	7463637	1	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7463536	7463637	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7463638	7463766	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7463767	7463886	0.95	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7463767	7463886	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7463887	7463998	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7463999	7464109	0.82	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7463999	7464109	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7464110	7464238	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7464239	7464310	1	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7464239	7464310	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7464311	7464419	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7464420	7464533	0.99	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7464420	7464533	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7464534	7464711	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7464712	7464810	1	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7464712	7464810	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7464811	7464923	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7464924	7465085	0.85	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7464924	7465085	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7465086	7465235	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7465236	7465376	0.9	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7465236	7465376	.	-	.	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	start_codon	7465374	7465376	.	-	0	transcript_id "Ledus.S2G097200.t1"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	transcript	7462152	7465376	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	stop_codon	7462149	7462151	.	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7462152	7462214	0.99	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7462152	7462214	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7462215	7462310	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7462311	7462502	1	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7462311	7462502	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7462503	7462593	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7462594	7462695	1	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7462594	7462695	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7462696	7462787	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7462788	7462852	1	-	2	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7462788	7462852	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7462853	7463091	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7463092	7463175	1	-	2	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7463092	7463175	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7463176	7463375	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7463376	7463448	1	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7463376	7463448	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7463449	7463535	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7463536	7463637	1	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7463536	7463637	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7463638	7463766	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7463767	7463886	0.95	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7463767	7463886	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7463887	7463998	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7463999	7464109	0.87	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7463999	7464109	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7464110	7464238	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7464239	7464310	1	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7464239	7464310	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7464311	7464419	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7464420	7464533	0.96	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7464420	7464533	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7464534	7464711	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7464712	7464810	1	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7464712	7464810	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7464811	7464923	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7464924	7465082	0.77	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7464924	7465082	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	intron	7465083	7465235	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	CDS	7465236	7465376	0.8	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	exon	7465236	7465376	.	-	.	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
Ledus.S2	AUGUSTUS	start_codon	7465374	7465376	.	-	0	transcript_id "Ledus.S2G097200.t2"; gene_id "Ledus.S2G097200"
# This transcript jg11883.t2 is derived from g5502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11884.t1 is derived from g5503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7527013	7527474	.	+	.	Ledus.S4G104000
Ledus.S4	AUGUSTUS	transcript	7527013	7527474	.	+	.	transcript_id "Ledus.S4G104000.t1"; gene_id "Ledus.S4G104000"
Ledus.S4	AUGUSTUS	start_codon	7527013	7527015	.	+	0	transcript_id "Ledus.S4G104000.t1"; gene_id "Ledus.S4G104000"
Ledus.S4	AUGUSTUS	CDS	7527013	7527474	0.55	+	0	transcript_id "Ledus.S4G104000.t1"; gene_id "Ledus.S4G104000"
Ledus.S4	AUGUSTUS	exon	7527013	7527474	.	+	.	transcript_id "Ledus.S4G104000.t1"; gene_id "Ledus.S4G104000"
Ledus.S4	AUGUSTUS	stop_codon	7527475	7527477	.	+	0	transcript_id "Ledus.S4G104000.t1"; gene_id "Ledus.S4G104000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12806.t1 is derived from g6428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14846300	14846500	.	+	.	Ledus.S4G196200
Ledus.S4	AUGUSTUS	transcript	14846300	14846500	.	+	.	transcript_id "Ledus.S4G196200.t1"; gene_id "Ledus.S4G196200"
Ledus.S4	AUGUSTUS	start_codon	14846300	14846302	.	+	0	transcript_id "Ledus.S4G196200.t1"; gene_id "Ledus.S4G196200"
Ledus.S4	AUGUSTUS	CDS	14846300	14846500	0.8	+	0	transcript_id "Ledus.S4G196200.t1"; gene_id "Ledus.S4G196200"
Ledus.S4	AUGUSTUS	exon	14846300	14846500	.	+	.	transcript_id "Ledus.S4G196200.t1"; gene_id "Ledus.S4G196200"
Ledus.S4	AUGUSTUS	stop_codon	14846501	14846503	.	+	0	transcript_id "Ledus.S4G196200.t1"; gene_id "Ledus.S4G196200"
# This transcript jg12411.t2 is derived from g6032.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12411.t3 is derived from g6032.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12412.t1 is derived from g6033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11865676	11866398	.	-	.	Ledus.S4G156800
Ledus.S4	AUGUSTUS	transcript	11865676	11866398	.	-	.	transcript_id "Ledus.S4G156800.t1"; gene_id "Ledus.S4G156800"
Ledus.S4	AUGUSTUS	stop_codon	11865673	11865675	.	-	0	transcript_id "Ledus.S4G156800.t1"; gene_id "Ledus.S4G156800"
Ledus.S4	AUGUSTUS	CDS	11865676	11866398	0.83	-	0	transcript_id "Ledus.S4G156800.t1"; gene_id "Ledus.S4G156800"
Ledus.S4	AUGUSTUS	exon	11865676	11866398	.	-	.	transcript_id "Ledus.S4G156800.t1"; gene_id "Ledus.S4G156800"
Ledus.S4	AUGUSTUS	start_codon	11866396	11866398	.	-	0	transcript_id "Ledus.S4G156800.t1"; gene_id "Ledus.S4G156800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8318.t1 is derived from g12990.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10711742	10713422	.	+	.	Ledus.S5G109600
Ledus.S5	AUGUSTUS	transcript	10711742	10713422	.	+	.	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	start_codon	10711742	10711744	.	+	0	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	CDS	10711742	10712194	1	+	0	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	exon	10711742	10712194	.	+	.	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	intron	10712195	10712275	.	+	.	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	CDS	10712276	10712449	0.53	+	0	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	exon	10712276	10712449	.	+	.	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	intron	10712450	10712641	.	+	.	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	CDS	10712642	10712884	0.93	+	0	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	exon	10712642	10712884	.	+	.	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	intron	10712885	10712976	.	+	.	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	CDS	10712977	10713159	1	+	0	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	exon	10712977	10713159	.	+	.	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	intron	10713160	10713380	.	+	.	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	CDS	10713381	10713422	0.99	+	0	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	exon	10713381	10713422	.	+	.	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
Ledus.S5	AUGUSTUS	stop_codon	10713423	10713425	.	+	0	transcript_id "Ledus.S5G109600.t1"; gene_id "Ledus.S5G109600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6450.t1 is derived from g3893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31293378	31294787	.	+	.	Ledus.S1G387100
Ledus.S1	AUGUSTUS	transcript	31293378	31294787	.	+	.	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	start_codon	31293378	31293380	.	+	0	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	CDS	31293378	31293573	0.64	+	0	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	exon	31293378	31293573	.	+	.	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	intron	31293574	31293667	.	+	.	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	CDS	31293668	31293855	1	+	2	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	exon	31293668	31293855	.	+	.	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	intron	31293856	31293934	.	+	.	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	CDS	31293935	31294021	1	+	0	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	exon	31293935	31294021	.	+	.	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	intron	31294022	31294136	.	+	.	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	CDS	31294137	31294262	0.97	+	0	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	exon	31294137	31294262	.	+	.	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	intron	31294263	31294348	.	+	.	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	CDS	31294349	31294471	1	+	0	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	exon	31294349	31294471	.	+	.	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	intron	31294472	31294556	.	+	.	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	CDS	31294557	31294787	1	+	0	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	exon	31294557	31294787	.	+	.	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
Ledus.S1	AUGUSTUS	stop_codon	31294788	31294790	.	+	0	transcript_id "Ledus.S1G387100.t1"; gene_id "Ledus.S1G387100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4808.t1 is derived from g2246.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19899694	19900119	.	-	.	Ledus.S1G222900
Ledus.S1	AUGUSTUS	transcript	19899694	19900119	.	-	.	transcript_id "Ledus.S1G222900.t1"; gene_id "Ledus.S1G222900"
Ledus.S1	AUGUSTUS	stop_codon	19899691	19899693	.	-	0	transcript_id "Ledus.S1G222900.t1"; gene_id "Ledus.S1G222900"
Ledus.S1	AUGUSTUS	CDS	19899694	19900119	0.58	-	0	transcript_id "Ledus.S1G222900.t1"; gene_id "Ledus.S1G222900"
Ledus.S1	AUGUSTUS	exon	19899694	19900119	.	-	.	transcript_id "Ledus.S1G222900.t1"; gene_id "Ledus.S1G222900"
Ledus.S1	AUGUSTUS	start_codon	19900117	19900119	.	-	0	transcript_id "Ledus.S1G222900.t1"; gene_id "Ledus.S1G222900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11570.t1 is derived from g5188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5326491	5331668	.	-	.	Ledus.S4G072600
Ledus.S4	AUGUSTUS	transcript	5326491	5331668	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	stop_codon	5326488	5326490	.	-	0	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5326491	5327660	0.68	-	0	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5326491	5327660	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5327661	5327821	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5327822	5327865	1	-	2	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5327822	5327865	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5327866	5328135	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5328136	5328196	0.4	-	0	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5328136	5328196	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5328197	5328300	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5328301	5328360	0.32	-	0	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5328301	5328360	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5328361	5328820	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5328821	5328916	0.41	-	0	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5328821	5328916	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5328917	5328991	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5328992	5329107	1	-	2	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5328992	5329107	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5329108	5329736	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5329737	5329802	0.98	-	2	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5329737	5329802	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5329803	5330087	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5330088	5330183	0.38	-	2	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5330088	5330183	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5330184	5330566	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5330567	5330593	0.77	-	2	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5330567	5330593	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5330594	5330688	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5330689	5330777	1	-	1	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5330689	5330777	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5330778	5330857	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5330858	5330962	1	-	1	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5330858	5330962	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5330963	5331049	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5331050	5331162	0.55	-	0	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5331050	5331162	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5331163	5331269	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5331270	5331402	0.99	-	1	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5331270	5331402	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	intron	5331403	5331480	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	CDS	5331481	5331668	1	-	0	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	exon	5331481	5331668	.	-	.	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
Ledus.S4	AUGUSTUS	start_codon	5331666	5331668	.	-	0	transcript_id "Ledus.S4G072600.t1"; gene_id "Ledus.S4G072600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12386.t1 is derived from g6007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11581022	11583064	.	-	.	Ledus.S4G154200
Ledus.S4	AUGUSTUS	transcript	11581022	11583064	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	stop_codon	11581019	11581021	.	-	0	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	CDS	11581022	11581057	0.99	-	0	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	exon	11581022	11581057	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	intron	11581058	11581338	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	CDS	11581339	11581355	0.99	-	2	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	exon	11581339	11581355	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	intron	11581356	11581398	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	CDS	11581399	11581424	0.99	-	1	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	exon	11581399	11581424	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	intron	11581425	11581509	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	CDS	11581510	11581519	0.76	-	2	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	exon	11581510	11581519	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	intron	11581520	11581566	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	CDS	11581567	11581630	0.69	-	0	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	exon	11581567	11581630	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	intron	11581631	11581728	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	CDS	11581729	11581826	1	-	2	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	exon	11581729	11581826	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	intron	11581827	11582214	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	CDS	11582215	11582275	1	-	0	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	exon	11582215	11582275	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	intron	11582276	11582453	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	CDS	11582454	11582519	1	-	0	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	exon	11582454	11582519	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	intron	11582520	11582845	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	CDS	11582846	11583064	0.43	-	0	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	exon	11582846	11583064	.	-	.	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
Ledus.S4	AUGUSTUS	start_codon	11583062	11583064	.	-	0	transcript_id "Ledus.S4G154200.t1"; gene_id "Ledus.S4G154200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg268.t1 is derived from g7129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1303287	1306384	.	+	.	Ledus.S2G015000
Ledus.S2	AUGUSTUS	transcript	1303287	1306384	.	+	.	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	start_codon	1303287	1303289	.	+	0	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	CDS	1303287	1303571	0.74	+	0	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	exon	1303287	1303571	.	+	.	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	intron	1303572	1303727	.	+	.	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	CDS	1303728	1303779	1	+	0	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	exon	1303728	1303779	.	+	.	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	intron	1303780	1303951	.	+	.	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	CDS	1303952	1304019	1	+	2	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	exon	1303952	1304019	.	+	.	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	intron	1304020	1304106	.	+	.	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	CDS	1304107	1306104	0.99	+	0	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	exon	1304107	1306104	.	+	.	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	intron	1306105	1306219	.	+	.	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	CDS	1306220	1306384	0.97	+	0	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	exon	1306220	1306384	.	+	.	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
Ledus.S2	AUGUSTUS	stop_codon	1306385	1306387	.	+	0	transcript_id "Ledus.S2G015000.t1"; gene_id "Ledus.S2G015000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5413.t1 is derived from g2852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24036335	24037339	.	-	.	Ledus.S1G283400
Ledus.S1	AUGUSTUS	transcript	24036335	24037339	.	-	.	transcript_id "Ledus.S1G283400.t1"; gene_id "Ledus.S1G283400"
Ledus.S1	AUGUSTUS	stop_codon	24036332	24036334	.	-	0	transcript_id "Ledus.S1G283400.t1"; gene_id "Ledus.S1G283400"
Ledus.S1	AUGUSTUS	CDS	24036335	24037339	0.87	-	0	transcript_id "Ledus.S1G283400.t1"; gene_id "Ledus.S1G283400"
Ledus.S1	AUGUSTUS	exon	24036335	24037339	.	-	.	transcript_id "Ledus.S1G283400.t1"; gene_id "Ledus.S1G283400"
Ledus.S1	AUGUSTUS	start_codon	24037337	24037339	.	-	0	transcript_id "Ledus.S1G283400.t1"; gene_id "Ledus.S1G283400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1794.t1 is derived from g8657.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12630270	12630659	.	-	.	Ledus.S2G167600
Ledus.S2	AUGUSTUS	transcript	12630270	12630659	.	-	.	transcript_id "Ledus.S2G167600.t1"; gene_id "Ledus.S2G167600"
Ledus.S2	AUGUSTUS	stop_codon	12630267	12630269	.	-	0	transcript_id "Ledus.S2G167600.t1"; gene_id "Ledus.S2G167600"
Ledus.S2	AUGUSTUS	CDS	12630270	12630366	0.62	-	1	transcript_id "Ledus.S2G167600.t1"; gene_id "Ledus.S2G167600"
Ledus.S2	AUGUSTUS	exon	12630270	12630366	.	-	.	transcript_id "Ledus.S2G167600.t1"; gene_id "Ledus.S2G167600"
Ledus.S2	AUGUSTUS	intron	12630367	12630474	.	-	.	transcript_id "Ledus.S2G167600.t1"; gene_id "Ledus.S2G167600"
Ledus.S2	AUGUSTUS	CDS	12630475	12630659	0.45	-	0	transcript_id "Ledus.S2G167600.t1"; gene_id "Ledus.S2G167600"
Ledus.S2	AUGUSTUS	exon	12630475	12630659	.	-	.	transcript_id "Ledus.S2G167600.t1"; gene_id "Ledus.S2G167600"
Ledus.S2	AUGUSTUS	start_codon	12630657	12630659	.	-	0	transcript_id "Ledus.S2G167600.t1"; gene_id "Ledus.S2G167600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12004.t1 is derived from g5623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8415206	8417107	.	-	.	Ledus.S4G116000
Ledus.S4	AUGUSTUS	transcript	8415206	8417107	.	-	.	transcript_id "Ledus.S4G116000.t1"; gene_id "Ledus.S4G116000"
Ledus.S4	AUGUSTUS	stop_codon	8415203	8415205	.	-	0	transcript_id "Ledus.S4G116000.t1"; gene_id "Ledus.S4G116000"
Ledus.S4	AUGUSTUS	CDS	8415206	8417107	0.98	-	0	transcript_id "Ledus.S4G116000.t1"; gene_id "Ledus.S4G116000"
Ledus.S4	AUGUSTUS	exon	8415206	8417107	.	-	.	transcript_id "Ledus.S4G116000.t1"; gene_id "Ledus.S4G116000"
Ledus.S4	AUGUSTUS	start_codon	8417105	8417107	.	-	0	transcript_id "Ledus.S4G116000.t1"; gene_id "Ledus.S4G116000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10108.t1 is derived from g11138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12737387	12738348	.	+	.	Ledus.S3G158500
Ledus.S3	AUGUSTUS	transcript	12737387	12738348	.	+	.	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	start_codon	12737387	12737389	.	+	0	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	CDS	12737387	12737610	0.99	+	0	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	exon	12737387	12737610	.	+	.	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	intron	12737611	12737721	.	+	.	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	CDS	12737722	12737858	1	+	1	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	exon	12737722	12737858	.	+	.	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	intron	12737859	12737942	.	+	.	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	CDS	12737943	12738079	1	+	2	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	exon	12737943	12738079	.	+	.	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	intron	12738080	12738174	.	+	.	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	CDS	12738175	12738348	1	+	0	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	exon	12738175	12738348	.	+	.	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
Ledus.S3	AUGUSTUS	stop_codon	12738349	12738351	.	+	0	transcript_id "Ledus.S3G158500.t1"; gene_id "Ledus.S3G158500"
# This transcript jg9876.t2 is derived from g10906.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9877.t1 is derived from g10907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10887678	10891734	.	+	.	Ledus.S3G135400
Ledus.S3	AUGUSTUS	transcript	10887678	10891734	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	start_codon	10887678	10887680	.	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10887678	10887941	0.87	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10887678	10887941	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10887942	10888077	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10888078	10888224	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10888078	10888224	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10888225	10888302	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10888303	10888431	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10888303	10888431	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10888432	10888517	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10888518	10888580	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10888518	10888580	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10888581	10888689	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10888690	10888797	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10888690	10888797	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10888798	10889462	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10889463	10889540	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10889463	10889540	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10889541	10889616	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10889617	10889709	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10889617	10889709	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10889710	10889835	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10889836	10889922	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10889836	10889922	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10889923	10890014	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10890015	10890116	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10890015	10890116	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10890117	10890201	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10890202	10890321	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10890202	10890321	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10890322	10890399	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10890400	10890462	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10890400	10890462	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10890463	10890553	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10890554	10890702	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10890554	10890702	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10890703	10890832	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10890833	10890914	1	+	1	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10890833	10890914	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10890915	10891026	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10891027	10891085	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10891027	10891085	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10891086	10891178	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10891179	10891218	1	+	1	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10891179	10891218	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10891219	10891301	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10891302	10891396	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10891302	10891396	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10891397	10891503	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10891504	10891573	1	+	1	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10891504	10891573	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	intron	10891574	10891662	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	CDS	10891663	10891734	1	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	exon	10891663	10891734	.	+	.	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
Ledus.S3	AUGUSTUS	stop_codon	10891735	10891737	.	+	0	transcript_id "Ledus.S3G135400.t1"; gene_id "Ledus.S3G135400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10462.t1 is derived from g11492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15427090	15430774	.	-	.	Ledus.S3G193900
Ledus.S3	AUGUSTUS	transcript	15427090	15430774	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	stop_codon	15427087	15427089	.	-	0	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15427090	15427226	0.98	-	2	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15427090	15427226	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15427227	15427310	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15427311	15427506	1	-	0	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15427311	15427506	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15427507	15427586	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15427587	15427752	1	-	1	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15427587	15427752	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15427753	15427846	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15427847	15427941	0.93	-	0	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15427847	15427941	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15427942	15428042	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15428043	15428127	1	-	1	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15428043	15428127	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15428128	15428253	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15428254	15428405	1	-	0	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15428254	15428405	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15428406	15428522	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15428523	15428639	1	-	0	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15428523	15428639	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15428640	15428764	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15428765	15428899	1	-	0	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15428765	15428899	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15428900	15428985	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15428986	15429075	1	-	0	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15428986	15429075	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15429076	15429305	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15429306	15429458	1	-	0	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15429306	15429458	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15429459	15429545	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15429546	15429722	0.99	-	0	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15429546	15429722	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15429723	15429824	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15429825	15430028	0.97	-	0	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15429825	15430028	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15430029	15430209	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15430210	15430319	1	-	2	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15430210	15430319	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	intron	15430320	15430533	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	CDS	15430534	15430774	0.98	-	0	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	exon	15430534	15430774	.	-	.	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
Ledus.S3	AUGUSTUS	start_codon	15430772	15430774	.	-	0	transcript_id "Ledus.S3G193900.t1"; gene_id "Ledus.S3G193900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11055.t1 is derived from g4673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1497621	1499242	.	-	.	Ledus.S4G021100
Ledus.S4	AUGUSTUS	transcript	1497621	1499242	.	-	.	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	stop_codon	1497618	1497620	.	-	0	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	CDS	1497621	1497879	0.97	-	1	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	exon	1497621	1497879	.	-	.	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	intron	1497880	1497963	.	-	.	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	CDS	1497964	1498136	1	-	0	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	exon	1497964	1498136	.	-	.	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	intron	1498137	1498219	.	-	.	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	CDS	1498220	1498486	1	-	0	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	exon	1498220	1498486	.	-	.	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	intron	1498487	1498564	.	-	.	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	CDS	1498565	1499007	1	-	2	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	exon	1498565	1499007	.	-	.	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	intron	1499008	1499088	.	-	.	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	CDS	1499089	1499242	0.98	-	0	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	exon	1499089	1499242	.	-	.	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
Ledus.S4	AUGUSTUS	start_codon	1499240	1499242	.	-	0	transcript_id "Ledus.S4G021100.t1"; gene_id "Ledus.S4G021100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg3615.t1 is derived from g1051.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10223952	10226745	.	-	.	Ledus.S1G103600
Ledus.S1	AUGUSTUS	transcript	10223952	10226745	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	stop_codon	10223949	10223951	.	-	0	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10223952	10224194	0.94	-	0	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10223952	10224194	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10224195	10224360	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10224361	10224571	1	-	1	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10224361	10224571	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10224572	10224748	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10224749	10224958	0.85	-	1	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10224749	10224958	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10224959	10225066	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225067	10225314	1	-	0	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225067	10225314	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225315	10225393	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225394	10225483	0.99	-	0	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225394	10225483	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225484	10225567	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225568	10225690	0.99	-	0	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225568	10225690	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225691	10225871	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225872	10225971	1	-	1	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225872	10225971	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225972	10226048	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10226049	10226134	1	-	0	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10226049	10226134	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10226135	10226489	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10226490	10226560	0.97	-	2	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10226490	10226560	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10226561	10226654	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10226655	10226745	0.5	-	0	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10226655	10226745	.	-	.	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	start_codon	10226743	10226745	.	-	0	transcript_id "Ledus.S1G103600.t1"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	transcript	10223952	10226560	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	stop_codon	10223949	10223951	.	-	0	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10223952	10224194	0.95	-	0	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10223952	10224194	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10224195	10224360	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10224361	10224571	1	-	1	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10224361	10224571	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10224572	10224748	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10224749	10224958	0.85	-	1	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10224749	10224958	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10224959	10225066	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225067	10225314	1	-	0	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225067	10225314	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225315	10225393	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225394	10225483	0.99	-	0	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225394	10225483	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225484	10225567	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225568	10225690	0.99	-	0	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225568	10225690	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225691	10225871	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225872	10225971	1	-	1	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225872	10225971	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225972	10226048	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10226049	10226134	0.92	-	0	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10226049	10226134	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10226135	10226377	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10226378	10226399	0.77	-	1	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10226378	10226399	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10226400	10226489	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10226490	10226560	0.45	-	0	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10226490	10226560	.	-	.	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	start_codon	10226558	10226560	.	-	0	transcript_id "Ledus.S1G103600.t2"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	transcript	10223952	10226745	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	stop_codon	10223949	10223951	.	-	0	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10223952	10224194	0.95	-	0	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10223952	10224194	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10224195	10224360	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10224361	10224571	1	-	1	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10224361	10224571	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10224572	10224748	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10224749	10224958	0.82	-	1	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10224749	10224958	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10224959	10225066	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225067	10225314	1	-	0	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225067	10225314	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225315	10225393	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225394	10225472	0.8	-	1	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225394	10225472	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225473	10225567	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225568	10225575	0.68	-	0	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225568	10225575	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225576	10225645	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225646	10225690	0.59	-	0	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225646	10225690	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225691	10225871	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10225872	10225971	1	-	1	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10225872	10225971	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10225972	10226048	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10226049	10226134	1	-	0	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10226049	10226134	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10226135	10226489	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10226490	10226560	0.97	-	2	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10226490	10226560	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	intron	10226561	10226654	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	CDS	10226655	10226745	0.46	-	0	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	exon	10226655	10226745	.	-	.	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
Ledus.S1	AUGUSTUS	start_codon	10226743	10226745	.	-	0	transcript_id "Ledus.S1G103600.t3"; gene_id "Ledus.S1G103600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13152.t1 is derived from g6962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7481931	7487364	.	+	.	Ledus.S6G021400
Ledus.S6	AUGUSTUS	transcript	7481931	7487364	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	start_codon	7481931	7481933	.	+	0	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7481931	7481953	0.71	+	0	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7481931	7481953	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7481954	7482046	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7482047	7482174	1	+	1	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7482047	7482174	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7482175	7482280	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7482281	7482408	1	+	2	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7482281	7482408	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7482409	7482525	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7482526	7483293	0.95	+	0	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7482526	7483293	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7483294	7483454	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7483455	7483661	0.93	+	0	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7483455	7483661	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7483662	7483750	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7483751	7484006	0.52	+	0	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7483751	7484006	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7484007	7484554	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7484555	7484610	0.57	+	2	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7484555	7484610	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7484611	7484696	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7484697	7484964	0.65	+	0	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7484697	7484964	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7484965	7485234	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7485235	7485266	1	+	2	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7485235	7485266	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7485267	7485390	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7485391	7485480	0.67	+	0	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7485391	7485480	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7485481	7485564	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7485565	7485659	0.66	+	0	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7485565	7485659	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7485660	7485777	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7485778	7485953	0.52	+	1	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7485778	7485953	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7485954	7486030	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7486031	7486050	0.6	+	2	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7486031	7486050	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7486051	7486211	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7486212	7486281	1	+	0	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7486212	7486281	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7486282	7486371	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7486372	7486450	1	+	2	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7486372	7486450	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7486451	7486602	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7486603	7486736	1	+	1	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7486603	7486736	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7486737	7486831	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7486832	7486932	1	+	2	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7486832	7486932	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7486933	7487030	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7487031	7487110	1	+	0	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7487031	7487110	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	intron	7487111	7487264	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	CDS	7487265	7487364	0.87	+	1	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	exon	7487265	7487364	.	+	.	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
Ledus.S6	AUGUSTUS	stop_codon	7487365	7487367	.	+	0	transcript_id "Ledus.S6G021400.t1"; gene_id "Ledus.S6G021400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11522.t1 is derived from g5140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5050915	5054061	.	+	.	Ledus.S4G067800
Ledus.S4	AUGUSTUS	transcript	5050915	5054061	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	start_codon	5050915	5050917	.	+	0	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5050915	5050959	1	+	0	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5050915	5050959	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5050960	5051051	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5051052	5051253	1	+	0	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5051052	5051253	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5051254	5051353	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5051354	5051428	0.97	+	2	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5051354	5051428	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5051429	5051531	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5051532	5051638	0.94	+	2	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5051532	5051638	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5051639	5051755	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5051756	5051869	1	+	0	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5051756	5051869	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5051870	5051989	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5051990	5052104	0.98	+	0	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5051990	5052104	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5052105	5052211	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5052212	5052402	1	+	2	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5052212	5052402	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5052403	5052502	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5052503	5052619	1	+	0	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5052503	5052619	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5052620	5052762	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5052763	5052843	1	+	0	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5052763	5052843	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5052844	5053012	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5053013	5053239	1	+	0	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5053013	5053239	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5053240	5053356	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5053357	5053396	1	+	1	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5053357	5053396	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5053397	5053563	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5053564	5054061	0.97	+	0	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5053564	5054061	.	+	.	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	stop_codon	5054062	5054064	.	+	0	transcript_id "Ledus.S4G067800.t1"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	transcript	5050915	5054061	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	start_codon	5050915	5050917	.	+	0	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5050915	5050959	1	+	0	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5050915	5050959	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5050960	5051051	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5051052	5051253	1	+	0	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5051052	5051253	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5051254	5051343	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5051344	5051400	0.53	+	2	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5051344	5051400	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5051401	5051531	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5051532	5051638	0.94	+	2	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5051532	5051638	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5051639	5051755	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5051756	5051869	1	+	0	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5051756	5051869	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5051870	5051989	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5051990	5052104	0.99	+	0	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5051990	5052104	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5052105	5052211	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5052212	5052402	0.56	+	2	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5052212	5052402	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5052403	5052502	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5052503	5052619	1	+	0	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5052503	5052619	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5052620	5052762	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5052763	5052843	1	+	0	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5052763	5052843	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5052844	5053012	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5053013	5053239	1	+	0	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5053013	5053239	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5053240	5053356	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5053357	5053396	1	+	1	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5053357	5053396	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	intron	5053397	5053563	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	CDS	5053564	5054061	1	+	0	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	exon	5053564	5054061	.	+	.	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
Ledus.S4	AUGUSTUS	stop_codon	5054062	5054064	.	+	0	transcript_id "Ledus.S4G067800.t2"; gene_id "Ledus.S4G067800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7728.t1 is derived from g12399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5595930	5597690	.	+	.	Ledus.S5G050600
Ledus.S5	AUGUSTUS	transcript	5595930	5597690	.	+	.	transcript_id "Ledus.S5G050600.t1"; gene_id "Ledus.S5G050600"
Ledus.S5	AUGUSTUS	start_codon	5595930	5595932	.	+	0	transcript_id "Ledus.S5G050600.t1"; gene_id "Ledus.S5G050600"
Ledus.S5	AUGUSTUS	CDS	5595930	5596551	0.91	+	0	transcript_id "Ledus.S5G050600.t1"; gene_id "Ledus.S5G050600"
Ledus.S5	AUGUSTUS	exon	5595930	5596551	.	+	.	transcript_id "Ledus.S5G050600.t1"; gene_id "Ledus.S5G050600"
Ledus.S5	AUGUSTUS	intron	5596552	5596637	.	+	.	transcript_id "Ledus.S5G050600.t1"; gene_id "Ledus.S5G050600"
Ledus.S5	AUGUSTUS	CDS	5596638	5596708	1	+	2	transcript_id "Ledus.S5G050600.t1"; gene_id "Ledus.S5G050600"
Ledus.S5	AUGUSTUS	exon	5596638	5596708	.	+	.	transcript_id "Ledus.S5G050600.t1"; gene_id "Ledus.S5G050600"
Ledus.S5	AUGUSTUS	intron	5596709	5596853	.	+	.	transcript_id "Ledus.S5G050600.t1"; gene_id "Ledus.S5G050600"
Ledus.S5	AUGUSTUS	CDS	5596854	5597690	1	+	0	transcript_id "Ledus.S5G050600.t1"; gene_id "Ledus.S5G050600"
Ledus.S5	AUGUSTUS	exon	5596854	5597690	.	+	.	transcript_id "Ledus.S5G050600.t1"; gene_id "Ledus.S5G050600"
Ledus.S5	AUGUSTUS	stop_codon	5597691	5597693	.	+	0	transcript_id "Ledus.S5G050600.t1"; gene_id "Ledus.S5G050600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4180.t1 is derived from g1616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15216521	15216835	.	+	.	Ledus.S1G160100
Ledus.S1	AUGUSTUS	transcript	15216521	15216835	.	+	.	transcript_id "Ledus.S1G160100.t1"; gene_id "Ledus.S1G160100"
Ledus.S1	AUGUSTUS	start_codon	15216521	15216523	.	+	0	transcript_id "Ledus.S1G160100.t1"; gene_id "Ledus.S1G160100"
Ledus.S1	AUGUSTUS	CDS	15216521	15216835	0.63	+	0	transcript_id "Ledus.S1G160100.t1"; gene_id "Ledus.S1G160100"
Ledus.S1	AUGUSTUS	exon	15216521	15216835	.	+	.	transcript_id "Ledus.S1G160100.t1"; gene_id "Ledus.S1G160100"
Ledus.S1	AUGUSTUS	stop_codon	15216836	15216838	.	+	0	transcript_id "Ledus.S1G160100.t1"; gene_id "Ledus.S1G160100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1307.t1 is derived from g8168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9200337	9203225	.	+	.	Ledus.S2G118900
Ledus.S2	AUGUSTUS	transcript	9200337	9203225	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	start_codon	9200337	9200339	.	+	0	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	CDS	9200337	9200402	1	+	0	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	exon	9200337	9200402	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	intron	9200403	9200562	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	CDS	9200563	9200674	1	+	0	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	exon	9200563	9200674	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	intron	9200675	9200771	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	CDS	9200772	9200905	1	+	2	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	exon	9200772	9200905	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	intron	9200906	9201001	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	CDS	9201002	9201197	1	+	0	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	exon	9201002	9201197	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	intron	9201198	9201297	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	CDS	9201298	9201419	1	+	2	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	exon	9201298	9201419	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	intron	9201420	9201517	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	CDS	9201518	9201603	1	+	0	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	exon	9201518	9201603	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	intron	9201604	9201740	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	CDS	9201741	9202019	1	+	1	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	exon	9201741	9202019	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	intron	9202020	9202189	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	CDS	9202190	9202266	1	+	1	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	exon	9202190	9202266	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	intron	9202267	9202355	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	CDS	9202356	9202414	1	+	2	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	exon	9202356	9202414	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	intron	9202415	9202507	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	CDS	9202508	9202711	1	+	0	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	exon	9202508	9202711	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	intron	9202712	9202816	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	CDS	9202817	9202982	0.45	+	0	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	exon	9202817	9202982	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	intron	9202983	9203100	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	CDS	9203101	9203225	0.68	+	2	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	exon	9203101	9203225	.	+	.	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
Ledus.S2	AUGUSTUS	stop_codon	9203226	9203228	.	+	0	transcript_id "Ledus.S2G118900.t1"; gene_id "Ledus.S2G118900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3845.t1 is derived from g1281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13135295	13136052	.	-	.	Ledus.S1G126600
Ledus.S1	AUGUSTUS	transcript	13135295	13136052	.	-	.	transcript_id "Ledus.S1G126600.t1"; gene_id "Ledus.S1G126600"
Ledus.S1	AUGUSTUS	stop_codon	13135292	13135294	.	-	0	transcript_id "Ledus.S1G126600.t1"; gene_id "Ledus.S1G126600"
Ledus.S1	AUGUSTUS	CDS	13135295	13135557	0.94	-	2	transcript_id "Ledus.S1G126600.t1"; gene_id "Ledus.S1G126600"
Ledus.S1	AUGUSTUS	exon	13135295	13135557	.	-	.	transcript_id "Ledus.S1G126600.t1"; gene_id "Ledus.S1G126600"
Ledus.S1	AUGUSTUS	intron	13135558	13135691	.	-	.	transcript_id "Ledus.S1G126600.t1"; gene_id "Ledus.S1G126600"
Ledus.S1	AUGUSTUS	CDS	13135692	13136052	0.62	-	0	transcript_id "Ledus.S1G126600.t1"; gene_id "Ledus.S1G126600"
Ledus.S1	AUGUSTUS	exon	13135692	13136052	.	-	.	transcript_id "Ledus.S1G126600.t1"; gene_id "Ledus.S1G126600"
Ledus.S1	AUGUSTUS	start_codon	13136050	13136052	.	-	0	transcript_id "Ledus.S1G126600.t1"; gene_id "Ledus.S1G126600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3191.t1 is derived from g626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6676446	6677570	.	-	.	Ledus.S1G061200
Ledus.S1	AUGUSTUS	transcript	6676446	6677570	.	-	.	transcript_id "Ledus.S1G061200.t1"; gene_id "Ledus.S1G061200"
Ledus.S1	AUGUSTUS	stop_codon	6676443	6676445	.	-	0	transcript_id "Ledus.S1G061200.t1"; gene_id "Ledus.S1G061200"
Ledus.S1	AUGUSTUS	CDS	6676446	6676938	0.4	-	1	transcript_id "Ledus.S1G061200.t1"; gene_id "Ledus.S1G061200"
Ledus.S1	AUGUSTUS	exon	6676446	6676938	.	-	.	transcript_id "Ledus.S1G061200.t1"; gene_id "Ledus.S1G061200"
Ledus.S1	AUGUSTUS	intron	6676939	6677045	.	-	.	transcript_id "Ledus.S1G061200.t1"; gene_id "Ledus.S1G061200"
Ledus.S1	AUGUSTUS	CDS	6677046	6677140	0.43	-	0	transcript_id "Ledus.S1G061200.t1"; gene_id "Ledus.S1G061200"
Ledus.S1	AUGUSTUS	exon	6677046	6677140	.	-	.	transcript_id "Ledus.S1G061200.t1"; gene_id "Ledus.S1G061200"
Ledus.S1	AUGUSTUS	intron	6677141	6677273	.	-	.	transcript_id "Ledus.S1G061200.t1"; gene_id "Ledus.S1G061200"
Ledus.S1	AUGUSTUS	CDS	6677274	6677570	0.51	-	0	transcript_id "Ledus.S1G061200.t1"; gene_id "Ledus.S1G061200"
Ledus.S1	AUGUSTUS	exon	6677274	6677570	.	-	.	transcript_id "Ledus.S1G061200.t1"; gene_id "Ledus.S1G061200"
Ledus.S1	AUGUSTUS	start_codon	6677568	6677570	.	-	0	transcript_id "Ledus.S1G061200.t1"; gene_id "Ledus.S1G061200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10562.t1 is derived from g11592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16152938	16153989	.	-	.	Ledus.S3G203900
Ledus.S3	AUGUSTUS	transcript	16152938	16153989	.	-	.	transcript_id "Ledus.S3G203900.t1"; gene_id "Ledus.S3G203900"
Ledus.S3	AUGUSTUS	stop_codon	16152935	16152937	.	-	0	transcript_id "Ledus.S3G203900.t1"; gene_id "Ledus.S3G203900"
Ledus.S3	AUGUSTUS	CDS	16152938	16153471	1	-	0	transcript_id "Ledus.S3G203900.t1"; gene_id "Ledus.S3G203900"
Ledus.S3	AUGUSTUS	exon	16152938	16153471	.	-	.	transcript_id "Ledus.S3G203900.t1"; gene_id "Ledus.S3G203900"
Ledus.S3	AUGUSTUS	intron	16153472	16153547	.	-	.	transcript_id "Ledus.S3G203900.t1"; gene_id "Ledus.S3G203900"
Ledus.S3	AUGUSTUS	CDS	16153548	16153783	1	-	2	transcript_id "Ledus.S3G203900.t1"; gene_id "Ledus.S3G203900"
Ledus.S3	AUGUSTUS	exon	16153548	16153783	.	-	.	transcript_id "Ledus.S3G203900.t1"; gene_id "Ledus.S3G203900"
Ledus.S3	AUGUSTUS	intron	16153784	16153907	.	-	.	transcript_id "Ledus.S3G203900.t1"; gene_id "Ledus.S3G203900"
Ledus.S3	AUGUSTUS	CDS	16153908	16153989	1	-	0	transcript_id "Ledus.S3G203900.t1"; gene_id "Ledus.S3G203900"
Ledus.S3	AUGUSTUS	exon	16153908	16153989	.	-	.	transcript_id "Ledus.S3G203900.t1"; gene_id "Ledus.S3G203900"
Ledus.S3	AUGUSTUS	start_codon	16153987	16153989	.	-	0	transcript_id "Ledus.S3G203900.t1"; gene_id "Ledus.S3G203900"
# This transcript jg5394.t2 is derived from g2833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5395.t1 is derived from g2834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23981389	23981826	.	-	.	Ledus.S1G281600
Ledus.S1	AUGUSTUS	transcript	23981389	23981826	.	-	.	transcript_id "Ledus.S1G281600.t1"; gene_id "Ledus.S1G281600"
Ledus.S1	AUGUSTUS	stop_codon	23981386	23981388	.	-	0	transcript_id "Ledus.S1G281600.t1"; gene_id "Ledus.S1G281600"
Ledus.S1	AUGUSTUS	CDS	23981389	23981826	0.85	-	0	transcript_id "Ledus.S1G281600.t1"; gene_id "Ledus.S1G281600"
Ledus.S1	AUGUSTUS	exon	23981389	23981826	.	-	.	transcript_id "Ledus.S1G281600.t1"; gene_id "Ledus.S1G281600"
Ledus.S1	AUGUSTUS	start_codon	23981824	23981826	.	-	0	transcript_id "Ledus.S1G281600.t1"; gene_id "Ledus.S1G281600"
# This transcript jg3584.t2 is derived from g1020.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3585.t1 is derived from g1021.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9814712	9816807	.	+	.	Ledus.S1G100600
Ledus.S1	AUGUSTUS	transcript	9814712	9816807	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	start_codon	9814712	9814714	.	+	0	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	CDS	9814712	9815038	0.56	+	0	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	exon	9814712	9815038	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	intron	9815039	9815277	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	CDS	9815278	9815335	1	+	0	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	exon	9815278	9815335	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	intron	9815336	9815612	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	CDS	9815613	9815734	1	+	2	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	exon	9815613	9815734	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	intron	9815735	9815912	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	CDS	9815913	9815945	1	+	0	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	exon	9815913	9815945	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	intron	9815946	9816026	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	CDS	9816027	9816273	0.57	+	0	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	exon	9816027	9816273	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	intron	9816274	9816389	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	CDS	9816390	9816469	0.98	+	2	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	exon	9816390	9816469	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	intron	9816470	9816567	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	CDS	9816568	9816807	1	+	0	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	exon	9816568	9816807	.	+	.	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
Ledus.S1	AUGUSTUS	stop_codon	9816808	9816810	.	+	0	transcript_id "Ledus.S1G100600.t1"; gene_id "Ledus.S1G100600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1931.t1 is derived from g8794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13543774	13545517	.	-	.	Ledus.S2G181300
Ledus.S2	AUGUSTUS	transcript	13543774	13545517	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	stop_codon	13543771	13543773	.	-	0	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	CDS	13543774	13543989	1	-	0	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	exon	13543774	13543989	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	intron	13543990	13544071	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	CDS	13544072	13544174	0.99	-	1	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	exon	13544072	13544174	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	intron	13544175	13544281	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	CDS	13544282	13544361	0.99	-	0	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	exon	13544282	13544361	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	intron	13544362	13544454	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	CDS	13544455	13544537	1	-	2	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	exon	13544455	13544537	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	intron	13544538	13544703	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	CDS	13544704	13544752	1	-	0	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	exon	13544704	13544752	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	intron	13544753	13544849	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	CDS	13544850	13544915	1	-	0	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	exon	13544850	13544915	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	intron	13544916	13545021	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	CDS	13545022	13545071	1	-	2	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	exon	13545022	13545071	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	intron	13545072	13545177	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	CDS	13545178	13545302	0.81	-	1	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	exon	13545178	13545302	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	intron	13545303	13545404	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	CDS	13545405	13545517	0.98	-	0	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	exon	13545405	13545517	.	-	.	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
Ledus.S2	AUGUSTUS	start_codon	13545515	13545517	.	-	0	transcript_id "Ledus.S2G181300.t1"; gene_id "Ledus.S2G181300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10533.t1 is derived from g11563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15992327	15992530	.	-	.	Ledus.S3G201000
Ledus.S3	AUGUSTUS	transcript	15992327	15992530	.	-	.	transcript_id "Ledus.S3G201000.t1"; gene_id "Ledus.S3G201000"
Ledus.S3	AUGUSTUS	stop_codon	15992324	15992326	.	-	0	transcript_id "Ledus.S3G201000.t1"; gene_id "Ledus.S3G201000"
Ledus.S3	AUGUSTUS	CDS	15992327	15992530	0.62	-	0	transcript_id "Ledus.S3G201000.t1"; gene_id "Ledus.S3G201000"
Ledus.S3	AUGUSTUS	exon	15992327	15992530	.	-	.	transcript_id "Ledus.S3G201000.t1"; gene_id "Ledus.S3G201000"
Ledus.S3	AUGUSTUS	start_codon	15992528	15992530	.	-	0	transcript_id "Ledus.S3G201000.t1"; gene_id "Ledus.S3G201000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2113.t1 is derived from g8976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14788491	14791468	.	-	.	Ledus.S2G199500
Ledus.S2	AUGUSTUS	transcript	14788491	14791468	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	stop_codon	14788488	14788490	.	-	0	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14788491	14788547	0.94	-	0	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14788491	14788547	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14788548	14788652	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14788653	14788776	0.94	-	1	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14788653	14788776	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14788777	14788858	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14788859	14788950	1	-	0	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14788859	14788950	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14788951	14789025	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14789026	14789095	1	-	1	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14789026	14789095	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14789096	14789182	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14789183	14789248	1	-	1	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14789183	14789248	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14789249	14789491	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14789492	14789583	1	-	0	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14789492	14789583	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14789584	14789658	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14789659	14789724	1	-	0	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14789659	14789724	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14789725	14789802	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14789803	14789892	1	-	0	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14789803	14789892	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14789893	14790027	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14790028	14790160	1	-	1	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14790028	14790160	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14790161	14790236	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14790237	14790319	1	-	0	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14790237	14790319	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14790320	14790408	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14790409	14790483	1	-	0	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14790409	14790483	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14790484	14790566	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14790567	14790658	1	-	2	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14790567	14790658	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14790659	14790747	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14790748	14790829	1	-	0	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14790748	14790829	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14790830	14790909	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14790910	14790970	0.99	-	1	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14790910	14790970	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14790971	14791063	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14791064	14791101	0.48	-	0	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14791064	14791101	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14791102	14791223	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14791224	14791323	0.47	-	1	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14791224	14791323	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14791324	14791406	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14791407	14791468	0.98	-	0	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14791407	14791468	.	-	.	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	start_codon	14791466	14791468	.	-	0	transcript_id "Ledus.S2G199500.t1"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	transcript	14788706	14791468	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	stop_codon	14788703	14788705	.	-	0	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14788706	14788776	0.8	-	2	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14788706	14788776	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14788777	14788853	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14788854	14788950	0.93	-	0	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14788854	14788950	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14788951	14789025	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14789026	14789095	1	-	1	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14789026	14789095	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14789096	14789182	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14789183	14789248	1	-	1	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14789183	14789248	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14789249	14789491	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14789492	14789583	1	-	0	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14789492	14789583	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14789584	14789658	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14789659	14789724	1	-	0	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14789659	14789724	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14789725	14789802	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14789803	14789892	1	-	0	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14789803	14789892	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14789893	14790027	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14790028	14790160	1	-	1	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14790028	14790160	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14790161	14790236	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14790237	14790319	1	-	0	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14790237	14790319	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14790320	14790408	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14790409	14790483	1	-	0	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14790409	14790483	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14790484	14790566	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14790567	14790658	1	-	2	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14790567	14790658	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14790659	14790747	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14790748	14790829	1	-	0	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14790748	14790829	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14790830	14790909	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14790910	14790970	0.96	-	1	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14790910	14790970	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14790971	14791063	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14791064	14791101	0.44	-	0	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14791064	14791101	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14791102	14791223	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14791224	14791323	0.43	-	1	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14791224	14791323	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	intron	14791324	14791406	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	CDS	14791407	14791468	0.97	-	0	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	exon	14791407	14791468	.	-	.	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
Ledus.S2	AUGUSTUS	start_codon	14791466	14791468	.	-	0	transcript_id "Ledus.S2G199500.t2"; gene_id "Ledus.S2G199500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg616.t1 is derived from g7477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3675243	3679649	.	+	.	Ledus.S2G049800
Ledus.S2	AUGUSTUS	transcript	3675243	3679649	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	start_codon	3675243	3675245	.	+	0	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	CDS	3675243	3675878	0.88	+	0	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	exon	3675243	3675878	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	intron	3675879	3676106	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	CDS	3676107	3676160	1	+	0	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	exon	3676107	3676160	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	intron	3676161	3676247	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	CDS	3676248	3676265	1	+	0	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	exon	3676248	3676265	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	intron	3676266	3676349	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	CDS	3676350	3676508	1	+	0	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	exon	3676350	3676508	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	intron	3676509	3676607	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	CDS	3676608	3678440	1	+	0	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	exon	3676608	3678440	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	intron	3678441	3678518	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	CDS	3678519	3678969	0.92	+	0	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	exon	3678519	3678969	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	intron	3678970	3679165	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	CDS	3679166	3679403	0.85	+	2	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	exon	3679166	3679403	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	intron	3679404	3679630	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	CDS	3679631	3679649	0.93	+	1	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	exon	3679631	3679649	.	+	.	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
Ledus.S2	AUGUSTUS	stop_codon	3679650	3679652	.	+	0	transcript_id "Ledus.S2G049800.t1"; gene_id "Ledus.S2G049800"
# This transcript jg10761.t2 is derived from g11793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10762.t1 is derived from g11794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17524155	17525771	.	+	.	Ledus.S3G223900
Ledus.S3	AUGUSTUS	transcript	17524155	17525771	.	+	.	transcript_id "Ledus.S3G223900.t1"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	start_codon	17524155	17524157	.	+	0	transcript_id "Ledus.S3G223900.t1"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	CDS	17524155	17524872	0.14	+	0	transcript_id "Ledus.S3G223900.t1"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	exon	17524155	17524872	.	+	.	transcript_id "Ledus.S3G223900.t1"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	intron	17524873	17525051	.	+	.	transcript_id "Ledus.S3G223900.t1"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	CDS	17525052	17525116	0.41	+	2	transcript_id "Ledus.S3G223900.t1"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	exon	17525052	17525116	.	+	.	transcript_id "Ledus.S3G223900.t1"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	intron	17525117	17525357	.	+	.	transcript_id "Ledus.S3G223900.t1"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	CDS	17525358	17525771	0.58	+	0	transcript_id "Ledus.S3G223900.t1"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	exon	17525358	17525771	.	+	.	transcript_id "Ledus.S3G223900.t1"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	stop_codon	17525772	17525774	.	+	0	transcript_id "Ledus.S3G223900.t1"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	transcript	17524851	17525771	.	+	.	transcript_id "Ledus.S3G223900.t2"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	start_codon	17524851	17524853	.	+	0	transcript_id "Ledus.S3G223900.t2"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	CDS	17524851	17524872	0.2	+	0	transcript_id "Ledus.S3G223900.t2"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	exon	17524851	17524872	.	+	.	transcript_id "Ledus.S3G223900.t2"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	intron	17524873	17525051	.	+	.	transcript_id "Ledus.S3G223900.t2"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	CDS	17525052	17525116	0.31	+	2	transcript_id "Ledus.S3G223900.t2"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	exon	17525052	17525116	.	+	.	transcript_id "Ledus.S3G223900.t2"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	intron	17525117	17525357	.	+	.	transcript_id "Ledus.S3G223900.t2"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	CDS	17525358	17525771	0.53	+	0	transcript_id "Ledus.S3G223900.t2"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	exon	17525358	17525771	.	+	.	transcript_id "Ledus.S3G223900.t2"; gene_id "Ledus.S3G223900"
Ledus.S3	AUGUSTUS	stop_codon	17525772	17525774	.	+	0	transcript_id "Ledus.S3G223900.t2"; gene_id "Ledus.S3G223900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6762.t1 is derived from g4205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33965064	33965291	.	-	.	Ledus.S1G418300
Ledus.S1	AUGUSTUS	transcript	33965064	33965291	.	-	.	transcript_id "Ledus.S1G418300.t1"; gene_id "Ledus.S1G418300"
Ledus.S1	AUGUSTUS	stop_codon	33965061	33965063	.	-	0	transcript_id "Ledus.S1G418300.t1"; gene_id "Ledus.S1G418300"
Ledus.S1	AUGUSTUS	CDS	33965064	33965291	0.44	-	0	transcript_id "Ledus.S1G418300.t1"; gene_id "Ledus.S1G418300"
Ledus.S1	AUGUSTUS	exon	33965064	33965291	.	-	.	transcript_id "Ledus.S1G418300.t1"; gene_id "Ledus.S1G418300"
Ledus.S1	AUGUSTUS	start_codon	33965289	33965291	.	-	0	transcript_id "Ledus.S1G418300.t1"; gene_id "Ledus.S1G418300"
# This transcript jg7423.t2 is derived from g12094.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7424.t1 is derived from g12095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2376202	2377782	.	-	.	Ledus.S5G020200
Ledus.S5	AUGUSTUS	transcript	2376202	2377782	.	-	.	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	stop_codon	2376199	2376201	.	-	0	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	CDS	2376202	2376580	0.85	-	1	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	exon	2376202	2376580	.	-	.	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	intron	2376581	2376654	.	-	.	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	CDS	2376655	2376869	0.86	-	0	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	exon	2376655	2376869	.	-	.	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	intron	2376870	2376975	.	-	.	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	CDS	2376976	2377098	0.99	-	0	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	exon	2376976	2377098	.	-	.	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	intron	2377099	2377188	.	-	.	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	CDS	2377189	2377386	1	-	0	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	exon	2377189	2377386	.	-	.	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	intron	2377387	2377467	.	-	.	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	CDS	2377468	2377782	0.94	-	0	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	exon	2377468	2377782	.	-	.	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
Ledus.S5	AUGUSTUS	start_codon	2377780	2377782	.	-	0	transcript_id "Ledus.S5G020200.t1"; gene_id "Ledus.S5G020200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6430.t1 is derived from g3873.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31212951	31213715	.	+	.	Ledus.S1G385100
Ledus.S1	AUGUSTUS	transcript	31212951	31213715	.	+	.	transcript_id "Ledus.S1G385100.t1"; gene_id "Ledus.S1G385100"
Ledus.S1	AUGUSTUS	start_codon	31212951	31212953	.	+	0	transcript_id "Ledus.S1G385100.t1"; gene_id "Ledus.S1G385100"
Ledus.S1	AUGUSTUS	CDS	31212951	31213715	0.75	+	0	transcript_id "Ledus.S1G385100.t1"; gene_id "Ledus.S1G385100"
Ledus.S1	AUGUSTUS	exon	31212951	31213715	.	+	.	transcript_id "Ledus.S1G385100.t1"; gene_id "Ledus.S1G385100"
Ledus.S1	AUGUSTUS	stop_codon	31213716	31213718	.	+	0	transcript_id "Ledus.S1G385100.t1"; gene_id "Ledus.S1G385100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4689.t1 is derived from g2127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19039264	19041709	.	-	.	Ledus.S1G211000
Ledus.S1	AUGUSTUS	transcript	19039264	19041709	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	stop_codon	19039261	19039263	.	-	0	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	CDS	19039264	19039487	0.95	-	2	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	exon	19039264	19039487	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	intron	19039488	19039580	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	CDS	19039581	19039851	0.89	-	0	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	exon	19039581	19039851	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	intron	19039852	19039936	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	CDS	19039937	19040129	1	-	1	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	exon	19039937	19040129	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	intron	19040130	19040233	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	CDS	19040234	19040314	1	-	1	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	exon	19040234	19040314	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	intron	19040315	19040427	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	CDS	19040428	19040553	0.99	-	1	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	exon	19040428	19040553	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	intron	19040554	19040661	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	CDS	19040662	19040812	0.99	-	2	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	exon	19040662	19040812	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	intron	19040813	19040922	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	CDS	19040923	19041070	1	-	0	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	exon	19040923	19041070	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	intron	19041071	19041514	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	CDS	19041515	19041709	0.74	-	0	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	exon	19041515	19041709	.	-	.	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
Ledus.S1	AUGUSTUS	start_codon	19041707	19041709	.	-	0	transcript_id "Ledus.S1G211000.t1"; gene_id "Ledus.S1G211000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10197.t1 is derived from g11227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13523280	13523579	.	-	.	Ledus.S3G167400
Ledus.S3	AUGUSTUS	transcript	13523280	13523579	.	-	.	transcript_id "Ledus.S3G167400.t1"; gene_id "Ledus.S3G167400"
Ledus.S3	AUGUSTUS	stop_codon	13523277	13523279	.	-	0	transcript_id "Ledus.S3G167400.t1"; gene_id "Ledus.S3G167400"
Ledus.S3	AUGUSTUS	CDS	13523280	13523579	0.34	-	0	transcript_id "Ledus.S3G167400.t1"; gene_id "Ledus.S3G167400"
Ledus.S3	AUGUSTUS	exon	13523280	13523579	.	-	.	transcript_id "Ledus.S3G167400.t1"; gene_id "Ledus.S3G167400"
Ledus.S3	AUGUSTUS	start_codon	13523577	13523579	.	-	0	transcript_id "Ledus.S3G167400.t1"; gene_id "Ledus.S3G167400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10519.t1 is derived from g11549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15803115	15803318	.	-	.	Ledus.S3G199600
Ledus.S3	AUGUSTUS	transcript	15803115	15803318	.	-	.	transcript_id "Ledus.S3G199600.t1"; gene_id "Ledus.S3G199600"
Ledus.S3	AUGUSTUS	stop_codon	15803112	15803114	.	-	0	transcript_id "Ledus.S3G199600.t1"; gene_id "Ledus.S3G199600"
Ledus.S3	AUGUSTUS	CDS	15803115	15803318	0.58	-	0	transcript_id "Ledus.S3G199600.t1"; gene_id "Ledus.S3G199600"
Ledus.S3	AUGUSTUS	exon	15803115	15803318	.	-	.	transcript_id "Ledus.S3G199600.t1"; gene_id "Ledus.S3G199600"
Ledus.S3	AUGUSTUS	start_codon	15803316	15803318	.	-	0	transcript_id "Ledus.S3G199600.t1"; gene_id "Ledus.S3G199600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3409.t1 is derived from g844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8124250	8125379	.	+	.	Ledus.S1G083000
Ledus.S1	AUGUSTUS	transcript	8124250	8125379	.	+	.	transcript_id "Ledus.S1G083000.t1"; gene_id "Ledus.S1G083000"
Ledus.S1	AUGUSTUS	start_codon	8124250	8124252	.	+	0	transcript_id "Ledus.S1G083000.t1"; gene_id "Ledus.S1G083000"
Ledus.S1	AUGUSTUS	CDS	8124250	8124279	0.43	+	0	transcript_id "Ledus.S1G083000.t1"; gene_id "Ledus.S1G083000"
Ledus.S1	AUGUSTUS	exon	8124250	8124279	.	+	.	transcript_id "Ledus.S1G083000.t1"; gene_id "Ledus.S1G083000"
Ledus.S1	AUGUSTUS	intron	8124280	8124398	.	+	.	transcript_id "Ledus.S1G083000.t1"; gene_id "Ledus.S1G083000"
Ledus.S1	AUGUSTUS	CDS	8124399	8125379	0.82	+	0	transcript_id "Ledus.S1G083000.t1"; gene_id "Ledus.S1G083000"
Ledus.S1	AUGUSTUS	exon	8124399	8125379	.	+	.	transcript_id "Ledus.S1G083000.t1"; gene_id "Ledus.S1G083000"
Ledus.S1	AUGUSTUS	stop_codon	8125380	8125382	.	+	0	transcript_id "Ledus.S1G083000.t1"; gene_id "Ledus.S1G083000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6393.t1 is derived from g3836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30982610	30984098	.	-	.	Ledus.S1G381400
Ledus.S1	AUGUSTUS	transcript	30982610	30984098	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	stop_codon	30982607	30982609	.	-	0	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	CDS	30982610	30982789	0.84	-	0	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	exon	30982610	30982789	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	intron	30982790	30982882	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	CDS	30982883	30982957	1	-	0	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	exon	30982883	30982957	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	intron	30982958	30983108	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	CDS	30983109	30983207	1	-	0	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	exon	30983109	30983207	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	intron	30983208	30983310	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	CDS	30983311	30983510	1	-	2	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	exon	30983311	30983510	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	intron	30983511	30983608	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	CDS	30983609	30983656	1	-	2	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	exon	30983609	30983656	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	intron	30983657	30983738	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	CDS	30983739	30983856	1	-	0	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	exon	30983739	30983856	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	intron	30983857	30983951	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	CDS	30983952	30984098	0.98	-	0	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	exon	30983952	30984098	.	-	.	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
Ledus.S1	AUGUSTUS	start_codon	30984096	30984098	.	-	0	transcript_id "Ledus.S1G381400.t1"; gene_id "Ledus.S1G381400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13142.t1 is derived from g6952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7138490	7139071	.	+	.	Ledus.S6G020400
Ledus.S6	AUGUSTUS	transcript	7138490	7139071	.	+	.	transcript_id "Ledus.S6G020400.t1"; gene_id "Ledus.S6G020400"
Ledus.S6	AUGUSTUS	start_codon	7138490	7138492	.	+	0	transcript_id "Ledus.S6G020400.t1"; gene_id "Ledus.S6G020400"
Ledus.S6	AUGUSTUS	CDS	7138490	7139071	0.87	+	0	transcript_id "Ledus.S6G020400.t1"; gene_id "Ledus.S6G020400"
Ledus.S6	AUGUSTUS	exon	7138490	7139071	.	+	.	transcript_id "Ledus.S6G020400.t1"; gene_id "Ledus.S6G020400"
Ledus.S6	AUGUSTUS	stop_codon	7139072	7139074	.	+	0	transcript_id "Ledus.S6G020400.t1"; gene_id "Ledus.S6G020400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6862.t1 is derived from g4306.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34802018	34803642	.	-	.	Ledus.S1G428300
Ledus.S1	AUGUSTUS	transcript	34802018	34803642	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	stop_codon	34802015	34802017	.	-	0	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34802018	34802096	1	-	1	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34802018	34802096	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	intron	34802097	34802189	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34802190	34802320	1	-	0	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34802190	34802320	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	intron	34802321	34802436	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34802437	34802528	1	-	2	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34802437	34802528	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	intron	34802529	34802615	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34802616	34802704	1	-	1	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34802616	34802704	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	intron	34802705	34802817	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34802818	34802954	1	-	0	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34802818	34802954	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	intron	34802955	34803051	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34803052	34803147	1	-	0	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34803052	34803147	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	intron	34803148	34803246	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34803247	34803642	0.34	-	0	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34803247	34803642	.	-	.	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	start_codon	34803640	34803642	.	-	0	transcript_id "Ledus.S1G428300.t1"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	transcript	34802018	34803642	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	stop_codon	34802015	34802017	.	-	0	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34802018	34802096	1	-	1	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34802018	34802096	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	intron	34802097	34802189	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34802190	34802320	1	-	0	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34802190	34802320	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	intron	34802321	34802436	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34802437	34802528	1	-	2	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34802437	34802528	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	intron	34802529	34802615	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34802616	34802704	0.98	-	1	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34802616	34802704	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	intron	34802705	34802902	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34802903	34802954	0.89	-	2	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34802903	34802954	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	intron	34802955	34803041	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34803042	34803147	0.92	-	0	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34803042	34803147	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	intron	34803148	34803246	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	CDS	34803247	34803642	0.34	-	0	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	exon	34803247	34803642	.	-	.	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
Ledus.S1	AUGUSTUS	start_codon	34803640	34803642	.	-	0	transcript_id "Ledus.S1G428300.t2"; gene_id "Ledus.S1G428300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2261.t1 is derived from g9124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16658741	16659121	.	-	.	Ledus.S2G214300
Ledus.S2	AUGUSTUS	transcript	16658741	16659121	.	-	.	transcript_id "Ledus.S2G214300.t1"; gene_id "Ledus.S2G214300"
Ledus.S2	AUGUSTUS	stop_codon	16658738	16658740	.	-	0	transcript_id "Ledus.S2G214300.t1"; gene_id "Ledus.S2G214300"
Ledus.S2	AUGUSTUS	CDS	16658741	16659121	0.75	-	0	transcript_id "Ledus.S2G214300.t1"; gene_id "Ledus.S2G214300"
Ledus.S2	AUGUSTUS	exon	16658741	16659121	.	-	.	transcript_id "Ledus.S2G214300.t1"; gene_id "Ledus.S2G214300"
Ledus.S2	AUGUSTUS	start_codon	16659119	16659121	.	-	0	transcript_id "Ledus.S2G214300.t1"; gene_id "Ledus.S2G214300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3694.t1 is derived from g1130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10947577	10948494	.	-	.	Ledus.S1G111500
Ledus.S1	AUGUSTUS	transcript	10947577	10948494	.	-	.	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	stop_codon	10947574	10947576	.	-	0	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	CDS	10947577	10947600	1	-	0	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	exon	10947577	10947600	.	-	.	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	intron	10947601	10947744	.	-	.	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	CDS	10947745	10947812	1	-	2	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	exon	10947745	10947812	.	-	.	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	intron	10947813	10947901	.	-	.	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	CDS	10947902	10947955	0.96	-	2	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	exon	10947902	10947955	.	-	.	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	intron	10947956	10948316	.	-	.	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	CDS	10948317	10948365	0.77	-	0	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	exon	10948317	10948365	.	-	.	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	intron	10948366	10948440	.	-	.	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	CDS	10948441	10948494	0.51	-	0	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	exon	10948441	10948494	.	-	.	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
Ledus.S1	AUGUSTUS	start_codon	10948492	10948494	.	-	0	transcript_id "Ledus.S1G111500.t1"; gene_id "Ledus.S1G111500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10251.t1 is derived from g11281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13819796	13820321	.	+	.	Ledus.S3G172800
Ledus.S3	AUGUSTUS	transcript	13819796	13820321	.	+	.	transcript_id "Ledus.S3G172800.t1"; gene_id "Ledus.S3G172800"
Ledus.S3	AUGUSTUS	start_codon	13819796	13819798	.	+	0	transcript_id "Ledus.S3G172800.t1"; gene_id "Ledus.S3G172800"
Ledus.S3	AUGUSTUS	CDS	13819796	13820220	0.44	+	0	transcript_id "Ledus.S3G172800.t1"; gene_id "Ledus.S3G172800"
Ledus.S3	AUGUSTUS	exon	13819796	13820220	.	+	.	transcript_id "Ledus.S3G172800.t1"; gene_id "Ledus.S3G172800"
Ledus.S3	AUGUSTUS	intron	13820221	13820320	.	+	.	transcript_id "Ledus.S3G172800.t1"; gene_id "Ledus.S3G172800"
Ledus.S3	AUGUSTUS	CDS	13820321	13820321	0.55	+	1	transcript_id "Ledus.S3G172800.t1"; gene_id "Ledus.S3G172800"
Ledus.S3	AUGUSTUS	exon	13820321	13820321	.	+	.	transcript_id "Ledus.S3G172800.t1"; gene_id "Ledus.S3G172800"
Ledus.S3	AUGUSTUS	stop_codon	13820322	13820324	.	+	0	transcript_id "Ledus.S3G172800.t1"; gene_id "Ledus.S3G172800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11713.t1 is derived from g5332.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6183469	6184845	.	+	.	Ledus.S4G086900
Ledus.S4	AUGUSTUS	transcript	6183469	6184845	.	+	.	transcript_id "Ledus.S4G086900.t1"; gene_id "Ledus.S4G086900"
Ledus.S4	AUGUSTUS	start_codon	6183469	6183471	.	+	0	transcript_id "Ledus.S4G086900.t1"; gene_id "Ledus.S4G086900"
Ledus.S4	AUGUSTUS	CDS	6183469	6184845	0.66	+	0	transcript_id "Ledus.S4G086900.t1"; gene_id "Ledus.S4G086900"
Ledus.S4	AUGUSTUS	exon	6183469	6184845	.	+	.	transcript_id "Ledus.S4G086900.t1"; gene_id "Ledus.S4G086900"
Ledus.S4	AUGUSTUS	stop_codon	6184846	6184848	.	+	0	transcript_id "Ledus.S4G086900.t1"; gene_id "Ledus.S4G086900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1488.t1 is derived from g8349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10557088	10558359	.	-	.	Ledus.S2G137000
Ledus.S2	AUGUSTUS	transcript	10557088	10558359	.	-	.	transcript_id "Ledus.S2G137000.t1"; gene_id "Ledus.S2G137000"
Ledus.S2	AUGUSTUS	stop_codon	10557085	10557087	.	-	0	transcript_id "Ledus.S2G137000.t1"; gene_id "Ledus.S2G137000"
Ledus.S2	AUGUSTUS	CDS	10557088	10558359	0.43	-	0	transcript_id "Ledus.S2G137000.t1"; gene_id "Ledus.S2G137000"
Ledus.S2	AUGUSTUS	exon	10557088	10558359	.	-	.	transcript_id "Ledus.S2G137000.t1"; gene_id "Ledus.S2G137000"
Ledus.S2	AUGUSTUS	start_codon	10558357	10558359	.	-	0	transcript_id "Ledus.S2G137000.t1"; gene_id "Ledus.S2G137000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2960.t1 is derived from g395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4917048	4919246	.	+	.	Ledus.S1G038100
Ledus.S1	AUGUSTUS	transcript	4917048	4919246	.	+	.	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	start_codon	4917048	4917050	.	+	0	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	CDS	4917048	4917290	0.72	+	0	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	exon	4917048	4917290	.	+	.	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	intron	4917291	4917377	.	+	.	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	CDS	4917378	4918609	0.89	+	0	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	exon	4917378	4918609	.	+	.	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	intron	4918610	4918708	.	+	.	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	CDS	4918709	4918991	0.83	+	1	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	exon	4918709	4918991	.	+	.	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	intron	4918992	4919069	.	+	.	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	CDS	4919070	4919105	0.83	+	0	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	exon	4919070	4919105	.	+	.	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	intron	4919106	4919204	.	+	.	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	CDS	4919205	4919246	0.83	+	0	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	exon	4919205	4919246	.	+	.	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
Ledus.S1	AUGUSTUS	stop_codon	4919247	4919249	.	+	0	transcript_id "Ledus.S1G038100.t1"; gene_id "Ledus.S1G038100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11737.t1 is derived from g5356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6483368	6485074	.	-	.	Ledus.S4G089300
Ledus.S4	AUGUSTUS	transcript	6483368	6485074	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	stop_codon	6483365	6483367	.	-	0	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	CDS	6483368	6483562	1	-	0	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	exon	6483368	6483562	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	intron	6483563	6483693	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	CDS	6483694	6483750	1	-	0	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	exon	6483694	6483750	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	intron	6483751	6483843	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	CDS	6483844	6483942	0.82	-	0	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	exon	6483844	6483942	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	intron	6483943	6484047	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	CDS	6484048	6484140	0.84	-	0	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	exon	6484048	6484140	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	intron	6484141	6484255	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	CDS	6484256	6484348	0.93	-	0	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	exon	6484256	6484348	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	intron	6484349	6484475	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	CDS	6484476	6484553	1	-	0	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	exon	6484476	6484553	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	intron	6484554	6484634	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	CDS	6484635	6484746	1	-	1	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	exon	6484635	6484746	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	intron	6484747	6484835	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	CDS	6484836	6485074	0.78	-	0	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	exon	6484836	6485074	.	-	.	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
Ledus.S4	AUGUSTUS	start_codon	6485072	6485074	.	-	0	transcript_id "Ledus.S4G089300.t1"; gene_id "Ledus.S4G089300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11421.t1 is derived from g5039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4171927	4173063	.	+	.	Ledus.S4G057700
Ledus.S4	AUGUSTUS	transcript	4171927	4173063	.	+	.	transcript_id "Ledus.S4G057700.t1"; gene_id "Ledus.S4G057700"
Ledus.S4	AUGUSTUS	start_codon	4171927	4171929	.	+	0	transcript_id "Ledus.S4G057700.t1"; gene_id "Ledus.S4G057700"
Ledus.S4	AUGUSTUS	CDS	4171927	4173063	0.61	+	0	transcript_id "Ledus.S4G057700.t1"; gene_id "Ledus.S4G057700"
Ledus.S4	AUGUSTUS	exon	4171927	4173063	.	+	.	transcript_id "Ledus.S4G057700.t1"; gene_id "Ledus.S4G057700"
Ledus.S4	AUGUSTUS	stop_codon	4173064	4173066	.	+	0	transcript_id "Ledus.S4G057700.t1"; gene_id "Ledus.S4G057700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6086.t1 is derived from g3529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28861998	28865451	.	+	.	Ledus.S1G350700
Ledus.S1	AUGUSTUS	transcript	28861998	28865451	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	start_codon	28861998	28862000	.	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28861998	28862307	0.43	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28861998	28862307	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	intron	28862308	28862562	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28862563	28862732	1	+	2	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28862563	28862732	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	intron	28862733	28862810	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28862811	28862951	1	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28862811	28862951	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	intron	28862952	28863023	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28863024	28863095	1	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28863024	28863095	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	intron	28863096	28863176	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28863177	28863299	1	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28863177	28863299	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	intron	28863300	28863384	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28863385	28863441	1	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28863385	28863441	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	intron	28863442	28863520	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28863521	28863622	0.96	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28863521	28863622	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	intron	28863623	28863966	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28863967	28864029	0.52	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28863967	28864029	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	intron	28864030	28864363	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28864364	28864441	1	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28864364	28864441	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	intron	28864442	28864596	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28864597	28864666	1	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28864597	28864666	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	intron	28864667	28864947	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28864948	28865018	1	+	2	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28864948	28865018	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	intron	28865019	28865136	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28865137	28865229	1	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28865137	28865229	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	intron	28865230	28865379	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	CDS	28865380	28865451	1	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	exon	28865380	28865451	.	+	.	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
Ledus.S1	AUGUSTUS	stop_codon	28865452	28865454	.	+	0	transcript_id "Ledus.S1G350700.t1"; gene_id "Ledus.S1G350700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9533.t1 is derived from g10563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7612538	7616628	.	+	.	Ledus.S3G101000
Ledus.S3	AUGUSTUS	transcript	7612538	7616628	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	start_codon	7612538	7612540	.	+	0	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	CDS	7612538	7612681	0.91	+	0	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	exon	7612538	7612681	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	intron	7612682	7612761	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	CDS	7612762	7612815	0.99	+	0	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	exon	7612762	7612815	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	intron	7612816	7612894	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	CDS	7612895	7612927	0.97	+	0	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	exon	7612895	7612927	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	intron	7612928	7613030	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	CDS	7613031	7613225	0.82	+	0	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	exon	7613031	7613225	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	intron	7613226	7613311	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	CDS	7613312	7613383	1	+	0	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	exon	7613312	7613383	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	intron	7613384	7613474	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	CDS	7613475	7613680	0.93	+	0	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	exon	7613475	7613680	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	intron	7613681	7613869	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	CDS	7613870	7615191	0.67	+	1	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	exon	7613870	7615191	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	intron	7615192	7615325	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	CDS	7615326	7615600	1	+	2	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	exon	7615326	7615600	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	intron	7615601	7615735	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	CDS	7615736	7616002	0.99	+	0	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	exon	7615736	7616002	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	intron	7616003	7616193	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	CDS	7616194	7616241	0.77	+	0	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	exon	7616194	7616241	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	intron	7616242	7616350	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	CDS	7616351	7616420	0.97	+	0	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	exon	7616351	7616420	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	intron	7616421	7616566	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	CDS	7616567	7616628	0.21	+	2	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	exon	7616567	7616628	.	+	.	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
Ledus.S3	AUGUSTUS	stop_codon	7616629	7616631	.	+	0	transcript_id "Ledus.S3G101000.t1"; gene_id "Ledus.S3G101000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3342.t1 is derived from g777.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7597730	7598381	.	-	.	Ledus.S1G076300
Ledus.S1	AUGUSTUS	transcript	7597730	7598381	.	-	.	transcript_id "Ledus.S1G076300.t1"; gene_id "Ledus.S1G076300"
Ledus.S1	AUGUSTUS	stop_codon	7597727	7597729	.	-	0	transcript_id "Ledus.S1G076300.t1"; gene_id "Ledus.S1G076300"
Ledus.S1	AUGUSTUS	CDS	7597730	7598079	0.5	-	2	transcript_id "Ledus.S1G076300.t1"; gene_id "Ledus.S1G076300"
Ledus.S1	AUGUSTUS	exon	7597730	7598079	.	-	.	transcript_id "Ledus.S1G076300.t1"; gene_id "Ledus.S1G076300"
Ledus.S1	AUGUSTUS	intron	7598080	7598200	.	-	.	transcript_id "Ledus.S1G076300.t1"; gene_id "Ledus.S1G076300"
Ledus.S1	AUGUSTUS	CDS	7598201	7598381	0.53	-	0	transcript_id "Ledus.S1G076300.t1"; gene_id "Ledus.S1G076300"
Ledus.S1	AUGUSTUS	exon	7598201	7598381	.	-	.	transcript_id "Ledus.S1G076300.t1"; gene_id "Ledus.S1G076300"
Ledus.S1	AUGUSTUS	start_codon	7598379	7598381	.	-	0	transcript_id "Ledus.S1G076300.t1"; gene_id "Ledus.S1G076300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8763.t1 is derived from g9793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1880481	1880857	.	+	.	Ledus.S3G024000
Ledus.S3	AUGUSTUS	transcript	1880481	1880857	.	+	.	transcript_id "Ledus.S3G024000.t1"; gene_id "Ledus.S3G024000"
Ledus.S3	AUGUSTUS	start_codon	1880481	1880483	.	+	0	transcript_id "Ledus.S3G024000.t1"; gene_id "Ledus.S3G024000"
Ledus.S3	AUGUSTUS	CDS	1880481	1880629	1	+	0	transcript_id "Ledus.S3G024000.t1"; gene_id "Ledus.S3G024000"
Ledus.S3	AUGUSTUS	exon	1880481	1880629	.	+	.	transcript_id "Ledus.S3G024000.t1"; gene_id "Ledus.S3G024000"
Ledus.S3	AUGUSTUS	intron	1880630	1880724	.	+	.	transcript_id "Ledus.S3G024000.t1"; gene_id "Ledus.S3G024000"
Ledus.S3	AUGUSTUS	CDS	1880725	1880857	1	+	1	transcript_id "Ledus.S3G024000.t1"; gene_id "Ledus.S3G024000"
Ledus.S3	AUGUSTUS	exon	1880725	1880857	.	+	.	transcript_id "Ledus.S3G024000.t1"; gene_id "Ledus.S3G024000"
Ledus.S3	AUGUSTUS	stop_codon	1880858	1880860	.	+	0	transcript_id "Ledus.S3G024000.t1"; gene_id "Ledus.S3G024000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10882.t1 is derived from g4500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	302842	303587	.	-	.	Ledus.S4G003800
Ledus.S4	AUGUSTUS	transcript	302842	303587	.	-	.	transcript_id "Ledus.S4G003800.t1"; gene_id "Ledus.S4G003800"
Ledus.S4	AUGUSTUS	stop_codon	302839	302841	.	-	0	transcript_id "Ledus.S4G003800.t1"; gene_id "Ledus.S4G003800"
Ledus.S4	AUGUSTUS	CDS	302842	302948	0.99	-	2	transcript_id "Ledus.S4G003800.t1"; gene_id "Ledus.S4G003800"
Ledus.S4	AUGUSTUS	exon	302842	302948	.	-	.	transcript_id "Ledus.S4G003800.t1"; gene_id "Ledus.S4G003800"
Ledus.S4	AUGUSTUS	intron	302949	303230	.	-	.	transcript_id "Ledus.S4G003800.t1"; gene_id "Ledus.S4G003800"
Ledus.S4	AUGUSTUS	CDS	303231	303372	1	-	0	transcript_id "Ledus.S4G003800.t1"; gene_id "Ledus.S4G003800"
Ledus.S4	AUGUSTUS	exon	303231	303372	.	-	.	transcript_id "Ledus.S4G003800.t1"; gene_id "Ledus.S4G003800"
Ledus.S4	AUGUSTUS	intron	303373	303464	.	-	.	transcript_id "Ledus.S4G003800.t1"; gene_id "Ledus.S4G003800"
Ledus.S4	AUGUSTUS	CDS	303465	303587	0.47	-	0	transcript_id "Ledus.S4G003800.t1"; gene_id "Ledus.S4G003800"
Ledus.S4	AUGUSTUS	exon	303465	303587	.	-	.	transcript_id "Ledus.S4G003800.t1"; gene_id "Ledus.S4G003800"
Ledus.S4	AUGUSTUS	start_codon	303585	303587	.	-	0	transcript_id "Ledus.S4G003800.t1"; gene_id "Ledus.S4G003800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg428.t1 is derived from g7289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2401263	2404502	.	-	.	Ledus.S2G031000
Ledus.S2	AUGUSTUS	transcript	2401263	2404502	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	stop_codon	2401260	2401262	.	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2401263	2401319	1	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2401263	2401319	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2401320	2401419	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2401420	2401631	0.99	-	2	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2401420	2401631	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2401632	2401739	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2401740	2401913	0.87	-	2	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2401740	2401913	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2401914	2402098	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2402099	2402177	1	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2402099	2402177	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2402178	2402274	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2402275	2402580	1	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2402275	2402580	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2402581	2402738	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2402739	2402903	1	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2402739	2402903	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2402904	2403049	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2403050	2403127	1	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2403050	2403127	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2403128	2403227	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2403228	2403274	1	-	2	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2403228	2403274	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2403275	2403367	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2403368	2403425	1	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2403368	2403425	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2403426	2403530	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2403531	2403587	1	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2403531	2403587	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2403588	2403684	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2403685	2403768	1	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2403685	2403768	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2403769	2403859	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2403860	2403920	1	-	1	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2403860	2403920	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2403921	2404012	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2404013	2404122	1	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2404013	2404122	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2404123	2404209	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2404210	2404275	1	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2404210	2404275	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	intron	2404276	2404364	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	CDS	2404365	2404502	0.71	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	exon	2404365	2404502	.	-	.	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
Ledus.S2	AUGUSTUS	start_codon	2404500	2404502	.	-	0	transcript_id "Ledus.S2G031000.t1"; gene_id "Ledus.S2G031000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9278.t1 is derived from g10308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5755385	5756824	.	+	.	Ledus.S3G075500
Ledus.S3	AUGUSTUS	transcript	5755385	5756824	.	+	.	transcript_id "Ledus.S3G075500.t1"; gene_id "Ledus.S3G075500"
Ledus.S3	AUGUSTUS	start_codon	5755385	5755387	.	+	0	transcript_id "Ledus.S3G075500.t1"; gene_id "Ledus.S3G075500"
Ledus.S3	AUGUSTUS	CDS	5755385	5756639	0.35	+	0	transcript_id "Ledus.S3G075500.t1"; gene_id "Ledus.S3G075500"
Ledus.S3	AUGUSTUS	exon	5755385	5756639	.	+	.	transcript_id "Ledus.S3G075500.t1"; gene_id "Ledus.S3G075500"
Ledus.S3	AUGUSTUS	intron	5756640	5756735	.	+	.	transcript_id "Ledus.S3G075500.t1"; gene_id "Ledus.S3G075500"
Ledus.S3	AUGUSTUS	CDS	5756736	5756824	0.7	+	2	transcript_id "Ledus.S3G075500.t1"; gene_id "Ledus.S3G075500"
Ledus.S3	AUGUSTUS	exon	5756736	5756824	.	+	.	transcript_id "Ledus.S3G075500.t1"; gene_id "Ledus.S3G075500"
Ledus.S3	AUGUSTUS	stop_codon	5756825	5756827	.	+	0	transcript_id "Ledus.S3G075500.t1"; gene_id "Ledus.S3G075500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7326.t1 is derived from g11997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1186184	1193747	.	+	.	Ledus.S5G010400
Ledus.S5	AUGUSTUS	transcript	1186184	1193747	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	start_codon	1186184	1186186	.	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1186184	1186341	0.9	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1186184	1186341	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1186342	1186859	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1186860	1186970	1	+	1	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1186860	1186970	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1186971	1187059	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1187060	1187123	1	+	1	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1187060	1187123	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1187124	1187218	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1187219	1187350	1	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1187219	1187350	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1187351	1187539	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1187540	1187778	0.88	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1187540	1187778	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1187779	1187882	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1187883	1188210	0.96	+	1	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1187883	1188210	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1188211	1188319	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1188320	1188419	1	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1188320	1188419	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1188420	1188545	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1188546	1188727	1	+	2	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1188546	1188727	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1188728	1188969	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1188970	1189085	1	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1188970	1189085	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1189086	1189240	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1189241	1189343	1	+	1	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1189241	1189343	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1189344	1189539	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1189540	1189692	1	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1189540	1189692	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1189693	1189801	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1189802	1189948	1	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1189802	1189948	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1189949	1190082	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1190083	1190286	1	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1190083	1190286	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1190287	1190478	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1190479	1190643	1	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1190479	1190643	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1190644	1190733	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1190734	1190889	1	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1190734	1190889	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1190890	1191070	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1191071	1191208	1	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1191071	1191208	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1191209	1191296	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1191297	1191491	0.98	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1191297	1191491	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1191492	1191598	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1191599	1191725	0.98	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1191599	1191725	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1191726	1191874	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1191875	1192074	1	+	2	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1191875	1192074	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1192075	1192252	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1192253	1192435	1	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1192253	1192435	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1192436	1192603	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1192604	1192753	1	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1192604	1192753	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1192754	1192887	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1192888	1193085	0.88	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1192888	1193085	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1193086	1193193	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1193194	1193465	0.92	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1193194	1193465	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	intron	1193466	1193578	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	CDS	1193579	1193747	1	+	1	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	exon	1193579	1193747	.	+	.	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
Ledus.S5	AUGUSTUS	stop_codon	1193748	1193750	.	+	0	transcript_id "Ledus.S5G010400.t1"; gene_id "Ledus.S5G010400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12530.t1 is derived from g6151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12745867	12747659	.	+	.	Ledus.S4G168600
Ledus.S4	AUGUSTUS	transcript	12745867	12747659	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	start_codon	12745867	12745869	.	+	0	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	CDS	12745867	12745907	0.87	+	0	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	exon	12745867	12745907	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	intron	12745908	12746003	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	CDS	12746004	12746080	1	+	1	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	exon	12746004	12746080	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	intron	12746081	12746163	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	CDS	12746164	12746228	1	+	2	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	exon	12746164	12746228	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	intron	12746229	12746329	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	CDS	12746330	12746376	0.98	+	0	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	exon	12746330	12746376	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	intron	12746377	12746483	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	CDS	12746484	12746559	1	+	1	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	exon	12746484	12746559	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	intron	12746560	12746648	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	CDS	12746649	12746716	1	+	0	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	exon	12746649	12746716	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	intron	12746717	12746865	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	CDS	12746866	12746935	1	+	1	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	exon	12746866	12746935	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	intron	12746936	12747044	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	CDS	12747045	12747130	1	+	0	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	exon	12747045	12747130	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	intron	12747131	12747261	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	CDS	12747262	12747324	0.99	+	1	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	exon	12747262	12747324	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	intron	12747325	12747440	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	CDS	12747441	12747506	0.95	+	1	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	exon	12747441	12747506	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	intron	12747507	12747613	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	CDS	12747614	12747659	1	+	1	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	exon	12747614	12747659	.	+	.	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
Ledus.S4	AUGUSTUS	stop_codon	12747660	12747662	.	+	0	transcript_id "Ledus.S4G168600.t1"; gene_id "Ledus.S4G168600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10668.t1 is derived from g11698.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16994674	16996625	.	+	.	Ledus.S3G214500
Ledus.S3	AUGUSTUS	transcript	16994674	16996625	.	+	.	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	start_codon	16994674	16994676	.	+	0	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	CDS	16994674	16995080	1	+	0	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	exon	16994674	16995080	.	+	.	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	intron	16995081	16995164	.	+	.	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	CDS	16995165	16995423	1	+	1	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	exon	16995165	16995423	.	+	.	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	intron	16995424	16995506	.	+	.	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	CDS	16995507	16995809	1	+	0	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	exon	16995507	16995809	.	+	.	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	intron	16995810	16995904	.	+	.	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	CDS	16995905	16996272	1	+	0	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	exon	16995905	16996272	.	+	.	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	intron	16996273	16996372	.	+	.	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	CDS	16996373	16996625	1	+	1	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	exon	16996373	16996625	.	+	.	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	stop_codon	16996626	16996628	.	+	0	transcript_id "Ledus.S3G214500.t1"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	transcript	16994674	16996625	.	+	.	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	start_codon	16994674	16994676	.	+	0	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	CDS	16994674	16995080	0.98	+	0	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	exon	16994674	16995080	.	+	.	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	intron	16995081	16995164	.	+	.	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	CDS	16995165	16995423	1	+	1	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	exon	16995165	16995423	.	+	.	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	intron	16995424	16995500	.	+	.	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	CDS	16995501	16995809	1	+	0	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	exon	16995501	16995809	.	+	.	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	intron	16995810	16995904	.	+	.	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	CDS	16995905	16996272	1	+	0	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	exon	16995905	16996272	.	+	.	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	intron	16996273	16996372	.	+	.	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	CDS	16996373	16996625	1	+	1	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	exon	16996373	16996625	.	+	.	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
Ledus.S3	AUGUSTUS	stop_codon	16996626	16996628	.	+	0	transcript_id "Ledus.S3G214500.t2"; gene_id "Ledus.S3G214500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9735.t1 is derived from g10765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9481369	9489731	.	+	.	Ledus.S3G121200
Ledus.S3	AUGUSTUS	transcript	9481369	9489731	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	start_codon	9481369	9481371	.	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9481369	9481422	0.88	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9481369	9481422	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9481423	9481572	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9481573	9483230	0.9	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9481573	9483230	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9483231	9483513	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9483514	9483679	1	+	1	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9483514	9483679	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9483680	9483774	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9483775	9483865	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9483775	9483865	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9483866	9484062	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9484063	9484199	1	+	2	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9484063	9484199	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9484200	9484545	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9484546	9484605	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9484546	9484605	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9484606	9484677	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9484678	9484797	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9484678	9484797	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9484798	9485046	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9485047	9485115	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9485047	9485115	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9485116	9485318	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9485319	9485384	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9485319	9485384	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9485385	9486165	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9486166	9486255	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9486166	9486255	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9486256	9486373	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9486374	9486478	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9486374	9486478	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9486479	9486652	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9486653	9486781	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9486653	9486781	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9486782	9486911	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9486912	9487121	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9486912	9487121	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9487122	9487776	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9487777	9487926	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9487777	9487926	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9487927	9488161	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9488162	9488215	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9488162	9488215	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9488216	9488351	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9488352	9488410	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9488352	9488410	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9488411	9488632	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9488633	9488699	1	+	1	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9488633	9488699	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9488700	9488792	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9488793	9488969	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9488793	9488969	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9488970	9489087	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9489088	9489144	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9489088	9489144	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9489145	9489345	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9489346	9489420	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9489346	9489420	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	intron	9489421	9489578	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	CDS	9489579	9489731	1	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	exon	9489579	9489731	.	+	.	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
Ledus.S3	AUGUSTUS	stop_codon	9489732	9489734	.	+	0	transcript_id "Ledus.S3G121200.t1"; gene_id "Ledus.S3G121200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7162.t1 is derived from g6693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1915222	1918361	.	+	.	Ledus.C7G022300
Ledus.C7	AUGUSTUS	transcript	1915222	1918361	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	start_codon	1915222	1915224	.	+	0	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	CDS	1915222	1915248	0.65	+	0	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	exon	1915222	1915248	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	intron	1915249	1915387	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	CDS	1915388	1915477	1	+	0	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	exon	1915388	1915477	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	intron	1915478	1915617	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	CDS	1915618	1915701	1	+	0	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	exon	1915618	1915701	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	intron	1915702	1915905	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	CDS	1915906	1916124	1	+	0	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	exon	1915906	1916124	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	intron	1916125	1916340	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	CDS	1916341	1916442	1	+	0	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	exon	1916341	1916442	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	intron	1916443	1916616	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	CDS	1916617	1917066	0.98	+	0	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	exon	1916617	1917066	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	intron	1917067	1917179	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	CDS	1917180	1917409	1	+	0	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	exon	1917180	1917409	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	intron	1917410	1917498	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	CDS	1917499	1917595	1	+	1	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	exon	1917499	1917595	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	intron	1917596	1917688	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	CDS	1917689	1917871	1	+	0	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	exon	1917689	1917871	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	intron	1917872	1917966	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	CDS	1917967	1918064	1	+	0	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	exon	1917967	1918064	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	intron	1918065	1918141	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	CDS	1918142	1918361	1	+	1	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	exon	1918142	1918361	.	+	.	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
Ledus.C7	AUGUSTUS	stop_codon	1918362	1918364	.	+	0	transcript_id "Ledus.C7G022300.t1"; gene_id "Ledus.C7G022300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3218.t1 is derived from g653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6967087	6970236	.	+	.	Ledus.S1G063900
Ledus.S1	AUGUSTUS	transcript	6967087	6970236	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	start_codon	6967087	6967089	.	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6967087	6967290	0.63	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6967087	6967290	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6967291	6967800	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6967801	6967887	0.98	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6967801	6967887	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6967888	6967999	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6968000	6968068	0.98	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6968000	6968068	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6968069	6968151	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6968152	6968211	1	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6968152	6968211	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6968212	6968339	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6968340	6968480	1	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6968340	6968480	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6968481	6968576	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6968577	6968621	1	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6968577	6968621	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6968622	6968782	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6968783	6968857	1	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6968783	6968857	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6968858	6968975	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6968976	6969008	1	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6968976	6969008	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6969009	6969113	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6969114	6969156	0.85	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6969114	6969156	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6969157	6969272	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6969273	6969361	1	+	2	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6969273	6969361	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6969362	6969457	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6969458	6969565	1	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6969458	6969565	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6969566	6969662	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6969663	6969758	1	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6969663	6969758	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6969759	6969860	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6969861	6969951	1	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6969861	6969951	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	intron	6969952	6970048	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	CDS	6970049	6970236	1	+	2	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	exon	6970049	6970236	.	+	.	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
Ledus.S1	AUGUSTUS	stop_codon	6970237	6970239	.	+	0	transcript_id "Ledus.S1G063900.t1"; gene_id "Ledus.S1G063900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4339.t1 is derived from g1775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16464295	16465797	.	+	.	Ledus.S1G176000
Ledus.S1	AUGUSTUS	transcript	16464295	16465797	.	+	.	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	start_codon	16464295	16464297	.	+	0	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	CDS	16464295	16464349	0.77	+	0	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	exon	16464295	16464349	.	+	.	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	intron	16464350	16464536	.	+	.	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	CDS	16464537	16464888	1	+	2	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	exon	16464537	16464888	.	+	.	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	intron	16464889	16465068	.	+	.	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	CDS	16465069	16465204	1	+	1	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	exon	16465069	16465204	.	+	.	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	intron	16465205	16465335	.	+	.	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	CDS	16465336	16465797	0.79	+	0	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	exon	16465336	16465797	.	+	.	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
Ledus.S1	AUGUSTUS	stop_codon	16465798	16465800	.	+	0	transcript_id "Ledus.S1G176000.t1"; gene_id "Ledus.S1G176000"
# This transcript jg6479.t2 is derived from g3922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6480.t1 is derived from g3923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31531901	31534155	.	+	.	Ledus.S1G390100
Ledus.S1	AUGUSTUS	transcript	31531901	31534155	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	start_codon	31531901	31531903	.	+	0	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	CDS	31531901	31532377	0.49	+	0	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	exon	31531901	31532377	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	intron	31532378	31532516	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	CDS	31532517	31532663	1	+	0	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	exon	31532517	31532663	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	intron	31532664	31532751	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	CDS	31532752	31532884	1	+	0	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	exon	31532752	31532884	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	intron	31532885	31532964	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	CDS	31532965	31533404	0.74	+	2	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	exon	31532965	31533404	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	intron	31533405	31533496	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	CDS	31533497	31533573	1	+	0	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	exon	31533497	31533573	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	intron	31533574	31533657	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	CDS	31533658	31533793	1	+	1	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	exon	31533658	31533793	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	intron	31533794	31533891	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	CDS	31533892	31534155	0.94	+	0	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	exon	31533892	31534155	.	+	.	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
Ledus.S1	AUGUSTUS	stop_codon	31534156	31534158	.	+	0	transcript_id "Ledus.S1G390100.t1"; gene_id "Ledus.S1G390100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11907.t1 is derived from g5526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7688409	7688984	.	+	.	Ledus.S4G106300
Ledus.S4	AUGUSTUS	transcript	7688409	7688984	.	+	.	transcript_id "Ledus.S4G106300.t1"; gene_id "Ledus.S4G106300"
Ledus.S4	AUGUSTUS	start_codon	7688409	7688411	.	+	0	transcript_id "Ledus.S4G106300.t1"; gene_id "Ledus.S4G106300"
Ledus.S4	AUGUSTUS	CDS	7688409	7688639	0.7	+	0	transcript_id "Ledus.S4G106300.t1"; gene_id "Ledus.S4G106300"
Ledus.S4	AUGUSTUS	exon	7688409	7688639	.	+	.	transcript_id "Ledus.S4G106300.t1"; gene_id "Ledus.S4G106300"
Ledus.S4	AUGUSTUS	intron	7688640	7688714	.	+	.	transcript_id "Ledus.S4G106300.t1"; gene_id "Ledus.S4G106300"
Ledus.S4	AUGUSTUS	CDS	7688715	7688984	0.44	+	0	transcript_id "Ledus.S4G106300.t1"; gene_id "Ledus.S4G106300"
Ledus.S4	AUGUSTUS	exon	7688715	7688984	.	+	.	transcript_id "Ledus.S4G106300.t1"; gene_id "Ledus.S4G106300"
Ledus.S4	AUGUSTUS	stop_codon	7688985	7688987	.	+	0	transcript_id "Ledus.S4G106300.t1"; gene_id "Ledus.S4G106300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10324.t1 is derived from g11354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14228635	14230446	.	-	.	Ledus.S3G180100
Ledus.S3	AUGUSTUS	transcript	14228635	14229831	.	-	.	transcript_id "Ledus.S3G180100.t1"; gene_id "Ledus.S3G180100"
Ledus.S3	AUGUSTUS	stop_codon	14228632	14228634	.	-	0	transcript_id "Ledus.S3G180100.t1"; gene_id "Ledus.S3G180100"
Ledus.S3	AUGUSTUS	CDS	14228635	14229831	0.99	-	0	transcript_id "Ledus.S3G180100.t1"; gene_id "Ledus.S3G180100"
Ledus.S3	AUGUSTUS	exon	14228635	14229831	.	-	.	transcript_id "Ledus.S3G180100.t1"; gene_id "Ledus.S3G180100"
Ledus.S3	AUGUSTUS	start_codon	14229829	14229831	.	-	0	transcript_id "Ledus.S3G180100.t1"; gene_id "Ledus.S3G180100"
Ledus.S3	AUGUSTUS	transcript	14228635	14230446	.	-	.	transcript_id "Ledus.S3G180100.t2"; gene_id "Ledus.S3G180100"
Ledus.S3	AUGUSTUS	stop_codon	14228632	14228634	.	-	0	transcript_id "Ledus.S3G180100.t2"; gene_id "Ledus.S3G180100"
Ledus.S3	AUGUSTUS	CDS	14228635	14230446	0.97	-	0	transcript_id "Ledus.S3G180100.t2"; gene_id "Ledus.S3G180100"
Ledus.S3	AUGUSTUS	exon	14228635	14230446	.	-	.	transcript_id "Ledus.S3G180100.t2"; gene_id "Ledus.S3G180100"
Ledus.S3	AUGUSTUS	start_codon	14230444	14230446	.	-	0	transcript_id "Ledus.S3G180100.t2"; gene_id "Ledus.S3G180100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8040.t1 is derived from g12711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8752566	8756754	.	+	.	Ledus.S5G081800
Ledus.S5	AUGUSTUS	transcript	8752566	8756754	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	start_codon	8752566	8752568	.	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8752566	8752626	0.78	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8752566	8752626	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8752627	8752733	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8752734	8752879	1	+	2	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8752734	8752879	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8752880	8752961	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8752962	8753072	1	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8752962	8753072	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8753073	8753140	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8753141	8753264	1	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8753141	8753264	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8753265	8753363	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8753364	8753437	1	+	2	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8753364	8753437	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8753438	8753521	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8753522	8753566	1	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8753522	8753566	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8753567	8753773	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8753774	8753824	1	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8753774	8753824	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8753825	8753913	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8753914	8753982	1	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8753914	8753982	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8753983	8754177	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8754178	8754236	1	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8754178	8754236	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8754237	8754373	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8754374	8754443	1	+	1	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8754374	8754443	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8754444	8754524	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8754525	8754605	0.97	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8754525	8754605	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8754606	8754710	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8754711	8754797	0.97	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8754711	8754797	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8754798	8754883	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8754884	8755006	1	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8754884	8755006	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8755007	8755151	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8755152	8755214	1	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8755152	8755214	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8755215	8755416	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8755417	8755494	1	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8755417	8755494	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8755495	8756011	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8756012	8756157	1	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8756012	8756157	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8756158	8756237	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8756238	8756308	0.99	+	1	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8756238	8756308	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8756309	8756420	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8756421	8756499	1	+	2	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8756421	8756499	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	intron	8756500	8756753	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	CDS	8756754	8756754	1	+	1	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	exon	8756754	8756754	.	+	.	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
Ledus.S5	AUGUSTUS	stop_codon	8756755	8756757	.	+	0	transcript_id "Ledus.S5G081800.t1"; gene_id "Ledus.S5G081800"
# This transcript jg5071.t2 is derived from g2510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5072.t1 is derived from g2511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21459785	21462644	.	-	.	Ledus.S1G249300
Ledus.S1	AUGUSTUS	transcript	21459785	21462644	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	stop_codon	21459782	21459784	.	-	0	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21459785	21459905	1	-	1	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21459785	21459905	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21459906	21459976	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21459977	21460070	0.95	-	2	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21459977	21460070	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21460071	21460183	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21460184	21460644	0.87	-	1	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21460184	21460644	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21460645	21460751	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21460752	21461249	0.94	-	1	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21460752	21461249	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21461250	21461484	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21461485	21461571	0.41	-	1	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21461485	21461571	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21461572	21461697	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21461698	21461786	0.68	-	0	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21461698	21461786	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21461787	21461888	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21461889	21462059	0.95	-	0	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21461889	21462059	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21462060	21462138	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21462139	21462384	1	-	0	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21462139	21462384	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21462385	21462464	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21462465	21462644	0.85	-	0	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21462465	21462644	.	-	.	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	start_codon	21462642	21462644	.	-	0	transcript_id "Ledus.S1G249300.t1"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	transcript	21459785	21462644	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	stop_codon	21459782	21459784	.	-	0	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21459785	21459905	1	-	1	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21459785	21459905	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21459906	21459976	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21459977	21460070	0.92	-	2	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21459977	21460070	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21460071	21460183	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21460184	21460644	0.85	-	1	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21460184	21460644	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21460645	21460751	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21460752	21461249	0.92	-	1	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21460752	21461249	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21461250	21461484	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21461485	21461571	0.41	-	1	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21461485	21461571	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21461572	21461697	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21461698	21461786	0.77	-	0	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21461698	21461786	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21461787	21461888	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21461889	21462059	0.95	-	0	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21461889	21462059	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21462060	21462138	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21462139	21462393	1	-	0	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21462139	21462393	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	intron	21462394	21462464	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	CDS	21462465	21462644	0.75	-	0	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	exon	21462465	21462644	.	-	.	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
Ledus.S1	AUGUSTUS	start_codon	21462642	21462644	.	-	0	transcript_id "Ledus.S1G249300.t2"; gene_id "Ledus.S1G249300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10394.t1 is derived from g11424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14787042	14787461	.	+	.	Ledus.S3G187100
Ledus.S3	AUGUSTUS	transcript	14787042	14787461	.	+	.	transcript_id "Ledus.S3G187100.t1"; gene_id "Ledus.S3G187100"
Ledus.S3	AUGUSTUS	start_codon	14787042	14787044	.	+	0	transcript_id "Ledus.S3G187100.t1"; gene_id "Ledus.S3G187100"
Ledus.S3	AUGUSTUS	CDS	14787042	14787461	0.88	+	0	transcript_id "Ledus.S3G187100.t1"; gene_id "Ledus.S3G187100"
Ledus.S3	AUGUSTUS	exon	14787042	14787461	.	+	.	transcript_id "Ledus.S3G187100.t1"; gene_id "Ledus.S3G187100"
Ledus.S3	AUGUSTUS	stop_codon	14787462	14787464	.	+	0	transcript_id "Ledus.S3G187100.t1"; gene_id "Ledus.S3G187100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg458.t1 is derived from g7319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2680966	2682308	.	+	.	Ledus.S2G034000
Ledus.S2	AUGUSTUS	transcript	2680966	2682308	.	+	.	transcript_id "Ledus.S2G034000.t1"; gene_id "Ledus.S2G034000"
Ledus.S2	AUGUSTUS	start_codon	2680966	2680968	.	+	0	transcript_id "Ledus.S2G034000.t1"; gene_id "Ledus.S2G034000"
Ledus.S2	AUGUSTUS	CDS	2680966	2681773	0.8	+	0	transcript_id "Ledus.S2G034000.t1"; gene_id "Ledus.S2G034000"
Ledus.S2	AUGUSTUS	exon	2680966	2681773	.	+	.	transcript_id "Ledus.S2G034000.t1"; gene_id "Ledus.S2G034000"
Ledus.S2	AUGUSTUS	intron	2681774	2681878	.	+	.	transcript_id "Ledus.S2G034000.t1"; gene_id "Ledus.S2G034000"
Ledus.S2	AUGUSTUS	CDS	2681879	2681934	0.79	+	2	transcript_id "Ledus.S2G034000.t1"; gene_id "Ledus.S2G034000"
Ledus.S2	AUGUSTUS	exon	2681879	2681934	.	+	.	transcript_id "Ledus.S2G034000.t1"; gene_id "Ledus.S2G034000"
Ledus.S2	AUGUSTUS	intron	2681935	2682254	.	+	.	transcript_id "Ledus.S2G034000.t1"; gene_id "Ledus.S2G034000"
Ledus.S2	AUGUSTUS	CDS	2682255	2682308	0.74	+	0	transcript_id "Ledus.S2G034000.t1"; gene_id "Ledus.S2G034000"
Ledus.S2	AUGUSTUS	exon	2682255	2682308	.	+	.	transcript_id "Ledus.S2G034000.t1"; gene_id "Ledus.S2G034000"
Ledus.S2	AUGUSTUS	stop_codon	2682309	2682311	.	+	0	transcript_id "Ledus.S2G034000.t1"; gene_id "Ledus.S2G034000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6619.t1 is derived from g4062.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32753671	32754174	.	-	.	Ledus.S1G404000
Ledus.S1	AUGUSTUS	transcript	32753671	32754174	.	-	.	transcript_id "Ledus.S1G404000.t1"; gene_id "Ledus.S1G404000"
Ledus.S1	AUGUSTUS	stop_codon	32753668	32753670	.	-	0	transcript_id "Ledus.S1G404000.t1"; gene_id "Ledus.S1G404000"
Ledus.S1	AUGUSTUS	CDS	32753671	32754174	1	-	0	transcript_id "Ledus.S1G404000.t1"; gene_id "Ledus.S1G404000"
Ledus.S1	AUGUSTUS	exon	32753671	32754174	.	-	.	transcript_id "Ledus.S1G404000.t1"; gene_id "Ledus.S1G404000"
Ledus.S1	AUGUSTUS	start_codon	32754172	32754174	.	-	0	transcript_id "Ledus.S1G404000.t1"; gene_id "Ledus.S1G404000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7789.t1 is derived from g12460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6679119	6679876	.	-	.	Ledus.S5G056700
Ledus.S5	AUGUSTUS	transcript	6679119	6679876	.	-	.	transcript_id "Ledus.S5G056700.t1"; gene_id "Ledus.S5G056700"
Ledus.S5	AUGUSTUS	stop_codon	6679116	6679118	.	-	0	transcript_id "Ledus.S5G056700.t1"; gene_id "Ledus.S5G056700"
Ledus.S5	AUGUSTUS	CDS	6679119	6679220	0.39	-	0	transcript_id "Ledus.S5G056700.t1"; gene_id "Ledus.S5G056700"
Ledus.S5	AUGUSTUS	exon	6679119	6679220	.	-	.	transcript_id "Ledus.S5G056700.t1"; gene_id "Ledus.S5G056700"
Ledus.S5	AUGUSTUS	intron	6679221	6679291	.	-	.	transcript_id "Ledus.S5G056700.t1"; gene_id "Ledus.S5G056700"
Ledus.S5	AUGUSTUS	CDS	6679292	6679399	0.42	-	0	transcript_id "Ledus.S5G056700.t1"; gene_id "Ledus.S5G056700"
Ledus.S5	AUGUSTUS	exon	6679292	6679399	.	-	.	transcript_id "Ledus.S5G056700.t1"; gene_id "Ledus.S5G056700"
Ledus.S5	AUGUSTUS	intron	6679400	6679555	.	-	.	transcript_id "Ledus.S5G056700.t1"; gene_id "Ledus.S5G056700"
Ledus.S5	AUGUSTUS	CDS	6679556	6679876	0.6	-	0	transcript_id "Ledus.S5G056700.t1"; gene_id "Ledus.S5G056700"
Ledus.S5	AUGUSTUS	exon	6679556	6679876	.	-	.	transcript_id "Ledus.S5G056700.t1"; gene_id "Ledus.S5G056700"
Ledus.S5	AUGUSTUS	start_codon	6679874	6679876	.	-	0	transcript_id "Ledus.S5G056700.t1"; gene_id "Ledus.S5G056700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11465.t1 is derived from g5083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4489475	4493248	.	+	.	Ledus.S4G062100
Ledus.S4	AUGUSTUS	transcript	4489475	4493248	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	start_codon	4489475	4489477	.	+	0	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4489475	4489498	0.6	+	0	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4489475	4489498	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4489499	4489665	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4489666	4489869	0.98	+	0	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4489666	4489869	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4489870	4490075	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4490076	4490293	0.99	+	0	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4490076	4490293	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4490294	4490388	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4490389	4490512	1	+	1	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4490389	4490512	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4490513	4490650	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4490651	4490761	1	+	0	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4490651	4490761	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4490762	4490902	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4490903	4491139	1	+	0	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4490903	4491139	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4491140	4491230	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4491231	4491384	1	+	0	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4491231	4491384	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4491385	4491477	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4491478	4491622	1	+	2	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4491478	4491622	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4491623	4491808	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4491809	4491869	1	+	1	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4491809	4491869	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4491870	4491997	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4491998	4492099	0.89	+	0	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4491998	4492099	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4492100	4492203	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4492204	4492293	0.42	+	0	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4492204	4492293	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4492294	4492402	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4492403	4492576	0.65	+	0	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4492403	4492576	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4492577	4492709	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4492710	4492747	1	+	0	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4492710	4492747	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4492748	4492887	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4492888	4493024	0.34	+	1	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4492888	4493024	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	intron	4493025	4493210	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	CDS	4493211	4493248	0.6	+	2	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	exon	4493211	4493248	.	+	.	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
Ledus.S4	AUGUSTUS	stop_codon	4493249	4493251	.	+	0	transcript_id "Ledus.S4G062100.t1"; gene_id "Ledus.S4G062100"
# This transcript jg3818.t2 is derived from g1254.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3819.t1 is derived from g1255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12682160	12682690	.	+	.	Ledus.S1G124000
Ledus.S1	AUGUSTUS	transcript	12682160	12682690	.	+	.	transcript_id "Ledus.S1G124000.t1"; gene_id "Ledus.S1G124000"
Ledus.S1	AUGUSTUS	start_codon	12682160	12682162	.	+	0	transcript_id "Ledus.S1G124000.t1"; gene_id "Ledus.S1G124000"
Ledus.S1	AUGUSTUS	CDS	12682160	12682690	0.66	+	0	transcript_id "Ledus.S1G124000.t1"; gene_id "Ledus.S1G124000"
Ledus.S1	AUGUSTUS	exon	12682160	12682690	.	+	.	transcript_id "Ledus.S1G124000.t1"; gene_id "Ledus.S1G124000"
Ledus.S1	AUGUSTUS	stop_codon	12682691	12682693	.	+	0	transcript_id "Ledus.S1G124000.t1"; gene_id "Ledus.S1G124000"
# This transcript jg12217.t2 is derived from g5836.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12218.t1 is derived from g5837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10427616	10428934	.	-	.	Ledus.S4G137400
Ledus.S4	AUGUSTUS	transcript	10427616	10428934	.	-	.	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	stop_codon	10427613	10427615	.	-	0	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	CDS	10427616	10427735	0.37	-	0	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	exon	10427616	10427735	.	-	.	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	intron	10427736	10427841	.	-	.	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	CDS	10427842	10427957	0.3	-	2	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	exon	10427842	10427957	.	-	.	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	intron	10427958	10428128	.	-	.	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	CDS	10428129	10428262	0.62	-	1	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	exon	10428129	10428262	.	-	.	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	intron	10428263	10428382	.	-	.	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	CDS	10428383	10428499	0.53	-	1	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	exon	10428383	10428499	.	-	.	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	intron	10428500	10428584	.	-	.	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	CDS	10428585	10428934	0.61	-	0	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	exon	10428585	10428934	.	-	.	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
Ledus.S4	AUGUSTUS	start_codon	10428932	10428934	.	-	0	transcript_id "Ledus.S4G137400.t1"; gene_id "Ledus.S4G137400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10479.t1 is derived from g11509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15513879	15519805	.	-	.	Ledus.S3G195600
Ledus.S3	AUGUSTUS	transcript	15513879	15519805	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	stop_codon	15513876	15513878	.	-	0	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15513879	15513924	1	-	1	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15513879	15513924	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15513925	15514757	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15514758	15514985	1	-	1	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15514758	15514985	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15514986	15515117	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15515118	15515353	0.97	-	0	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15515118	15515353	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15515354	15515473	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15515474	15515599	1	-	0	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15515474	15515599	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15515600	15515691	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15515692	15515799	1	-	0	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15515692	15515799	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15515800	15515890	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15515891	15515954	1	-	1	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15515891	15515954	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15515955	15516096	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15516097	15516250	1	-	2	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15516097	15516250	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15516251	15516349	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15516350	15516521	1	-	0	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15516350	15516521	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15516522	15516812	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15516813	15517019	0.62	-	0	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15516813	15517019	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15517020	15517102	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15517103	15517144	0.16	-	0	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15517103	15517144	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15517145	15517242	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15517243	15517546	0.24	-	1	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15517243	15517546	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15517547	15517844	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15517845	15518933	0.84	-	1	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15517845	15518933	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15518934	15519019	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15519020	15519288	1	-	0	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15519020	15519288	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15519289	15519373	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15519374	15519594	1	-	2	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15519374	15519594	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15519595	15519675	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15519676	15519805	0.78	-	0	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15519676	15519805	.	-	.	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	start_codon	15519803	15519805	.	-	0	transcript_id "Ledus.S3G195600.t1"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	transcript	15513879	15519791	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	stop_codon	15513876	15513878	.	-	0	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15513879	15513924	1	-	1	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15513879	15513924	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15513925	15514757	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15514758	15514985	1	-	1	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15514758	15514985	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15514986	15515117	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15515118	15515353	0.96	-	0	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15515118	15515353	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15515354	15515473	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15515474	15515599	1	-	0	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15515474	15515599	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15515600	15515691	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15515692	15515799	1	-	0	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15515692	15515799	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15515800	15515890	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15515891	15515954	1	-	1	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15515891	15515954	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15515955	15516096	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15516097	15516250	1	-	2	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15516097	15516250	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15516251	15516349	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15516350	15516521	1	-	0	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15516350	15516521	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15516522	15516812	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15516813	15517019	0.67	-	0	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15516813	15517019	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15517020	15517102	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15517103	15517144	0.1	-	0	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15517103	15517144	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15517145	15517242	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15517243	15517546	0.13	-	1	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15517243	15517546	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15517547	15517844	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15517845	15518933	0.88	-	1	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15517845	15518933	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15518934	15519019	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15519020	15519288	1	-	0	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15519020	15519288	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15519289	15519373	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15519374	15519560	0.39	-	1	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15519374	15519560	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	intron	15519561	15519675	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	CDS	15519676	15519791	0.34	-	0	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	exon	15519676	15519791	.	-	.	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
Ledus.S3	AUGUSTUS	start_codon	15519789	15519791	.	-	0	transcript_id "Ledus.S3G195600.t2"; gene_id "Ledus.S3G195600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4509.t1 is derived from g1945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17443912	17444208	.	+	.	Ledus.S1G193000
Ledus.S1	AUGUSTUS	transcript	17443912	17444208	.	+	.	transcript_id "Ledus.S1G193000.t1"; gene_id "Ledus.S1G193000"
Ledus.S1	AUGUSTUS	start_codon	17443912	17443914	.	+	0	transcript_id "Ledus.S1G193000.t1"; gene_id "Ledus.S1G193000"
Ledus.S1	AUGUSTUS	CDS	17443912	17444208	0.68	+	0	transcript_id "Ledus.S1G193000.t1"; gene_id "Ledus.S1G193000"
Ledus.S1	AUGUSTUS	exon	17443912	17444208	.	+	.	transcript_id "Ledus.S1G193000.t1"; gene_id "Ledus.S1G193000"
Ledus.S1	AUGUSTUS	stop_codon	17444209	17444211	.	+	0	transcript_id "Ledus.S1G193000.t1"; gene_id "Ledus.S1G193000"
# This transcript jg7793.t2 is derived from g12464.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7794.t1 is derived from g12465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6803286	6806897	.	+	.	Ledus.S5G057200
Ledus.S5	AUGUSTUS	transcript	6803286	6806897	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	start_codon	6803286	6803288	.	+	0	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	CDS	6803286	6803640	0.75	+	0	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	exon	6803286	6803640	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	intron	6803641	6803828	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	CDS	6803829	6803943	1	+	2	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	exon	6803829	6803943	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	intron	6803944	6804096	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	CDS	6804097	6804292	0.99	+	1	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	exon	6804097	6804292	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	intron	6804293	6804392	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	CDS	6804393	6804506	1	+	0	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	exon	6804393	6804506	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	intron	6804507	6804680	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	CDS	6804681	6804854	1	+	0	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	exon	6804681	6804854	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	intron	6804855	6804987	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	CDS	6804988	6805182	0.99	+	0	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	exon	6804988	6805182	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	intron	6805183	6805292	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	CDS	6805293	6805415	1	+	0	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	exon	6805293	6805415	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	intron	6805416	6805629	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	CDS	6805630	6805751	1	+	0	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	exon	6805630	6805751	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	intron	6805752	6805924	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	CDS	6805925	6805963	1	+	1	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	exon	6805925	6805963	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	intron	6805964	6806058	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	CDS	6806059	6806197	1	+	1	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	exon	6806059	6806197	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	intron	6806198	6806286	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	CDS	6806287	6806577	1	+	0	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	exon	6806287	6806577	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	intron	6806578	6806657	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	CDS	6806658	6806897	0.99	+	0	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	exon	6806658	6806897	.	+	.	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
Ledus.S5	AUGUSTUS	stop_codon	6806898	6806900	.	+	0	transcript_id "Ledus.S5G057200.t1"; gene_id "Ledus.S5G057200"
# This transcript jg8603.t2 is derived from g9633.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8604.t1 is derived from g9634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	531356	532246	.	+	.	Ledus.S3G008100
Ledus.S3	AUGUSTUS	transcript	531356	532246	.	+	.	transcript_id "Ledus.S3G008100.t1"; gene_id "Ledus.S3G008100"
Ledus.S3	AUGUSTUS	start_codon	531356	531358	.	+	0	transcript_id "Ledus.S3G008100.t1"; gene_id "Ledus.S3G008100"
Ledus.S3	AUGUSTUS	CDS	531356	532246	0.87	+	0	transcript_id "Ledus.S3G008100.t1"; gene_id "Ledus.S3G008100"
Ledus.S3	AUGUSTUS	exon	531356	532246	.	+	.	transcript_id "Ledus.S3G008100.t1"; gene_id "Ledus.S3G008100"
Ledus.S3	AUGUSTUS	stop_codon	532247	532249	.	+	0	transcript_id "Ledus.S3G008100.t1"; gene_id "Ledus.S3G008100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10267.t1 is derived from g11297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13910468	13911435	.	+	.	Ledus.S3G174400
Ledus.S3	AUGUSTUS	transcript	13910468	13911435	.	+	.	transcript_id "Ledus.S3G174400.t1"; gene_id "Ledus.S3G174400"
Ledus.S3	AUGUSTUS	start_codon	13910468	13910470	.	+	0	transcript_id "Ledus.S3G174400.t1"; gene_id "Ledus.S3G174400"
Ledus.S3	AUGUSTUS	CDS	13910468	13910592	0.51	+	0	transcript_id "Ledus.S3G174400.t1"; gene_id "Ledus.S3G174400"
Ledus.S3	AUGUSTUS	exon	13910468	13910592	.	+	.	transcript_id "Ledus.S3G174400.t1"; gene_id "Ledus.S3G174400"
Ledus.S3	AUGUSTUS	intron	13910593	13910687	.	+	.	transcript_id "Ledus.S3G174400.t1"; gene_id "Ledus.S3G174400"
Ledus.S3	AUGUSTUS	CDS	13910688	13911435	0.99	+	1	transcript_id "Ledus.S3G174400.t1"; gene_id "Ledus.S3G174400"
Ledus.S3	AUGUSTUS	exon	13910688	13911435	.	+	.	transcript_id "Ledus.S3G174400.t1"; gene_id "Ledus.S3G174400"
Ledus.S3	AUGUSTUS	stop_codon	13911436	13911438	.	+	0	transcript_id "Ledus.S3G174400.t1"; gene_id "Ledus.S3G174400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12886.t1 is derived from g4459.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	345056	346897	.	-	.	Ledus.C10G002900
Ledus.C10	AUGUSTUS	transcript	345056	346897	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	stop_codon	345053	345055	.	-	0	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	CDS	345056	345064	0.53	-	0	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	exon	345056	345064	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	intron	345065	345160	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	CDS	345161	345337	0.97	-	0	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	exon	345161	345337	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	intron	345338	345436	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	CDS	345437	345544	1	-	0	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	exon	345437	345544	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	intron	345545	345682	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	CDS	345683	345733	1	-	0	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	exon	345683	345733	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	intron	345734	345813	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	CDS	345814	345942	1	-	0	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	exon	345814	345942	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	intron	345943	346039	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	CDS	346040	346141	1	-	0	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	exon	346040	346141	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	intron	346142	346256	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	CDS	346257	346301	0.92	-	0	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	exon	346257	346301	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	intron	346302	346439	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	CDS	346440	346460	0.96	-	0	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	exon	346440	346460	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	intron	346461	346539	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	CDS	346540	346608	1	-	0	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	exon	346540	346608	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	intron	346609	346729	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	CDS	346730	346897	0.49	-	0	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	exon	346730	346897	.	-	.	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
Ledus.C10	AUGUSTUS	start_codon	346895	346897	.	-	0	transcript_id "Ledus.C10G002900.t1"; gene_id "Ledus.C10G002900"
# This transcript jg9848.t2 is derived from g10878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9849.t1 is derived from g10879.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10525165	10525602	.	+	.	Ledus.S3G132600
Ledus.S3	AUGUSTUS	transcript	10525165	10525602	.	+	.	transcript_id "Ledus.S3G132600.t1"; gene_id "Ledus.S3G132600"
Ledus.S3	AUGUSTUS	start_codon	10525165	10525167	.	+	0	transcript_id "Ledus.S3G132600.t1"; gene_id "Ledus.S3G132600"
Ledus.S3	AUGUSTUS	CDS	10525165	10525602	0.99	+	0	transcript_id "Ledus.S3G132600.t1"; gene_id "Ledus.S3G132600"
Ledus.S3	AUGUSTUS	exon	10525165	10525602	.	+	.	transcript_id "Ledus.S3G132600.t1"; gene_id "Ledus.S3G132600"
Ledus.S3	AUGUSTUS	stop_codon	10525603	10525605	.	+	0	transcript_id "Ledus.S3G132600.t1"; gene_id "Ledus.S3G132600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3605.t1 is derived from g1041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10180341	10181818	.	+	.	Ledus.S1G102600
Ledus.S1	AUGUSTUS	transcript	10180341	10181818	.	+	.	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	start_codon	10180341	10180343	.	+	0	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	CDS	10180341	10180431	0.72	+	0	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	exon	10180341	10180431	.	+	.	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	intron	10180432	10180564	.	+	.	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	CDS	10180565	10180830	0.87	+	2	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	exon	10180565	10180830	.	+	.	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	intron	10180831	10180956	.	+	.	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	CDS	10180957	10181072	1	+	0	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	exon	10180957	10181072	.	+	.	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	intron	10181073	10181321	.	+	.	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	CDS	10181322	10181398	1	+	1	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	exon	10181322	10181398	.	+	.	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	intron	10181399	10181498	.	+	.	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	CDS	10181499	10181562	1	+	2	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	exon	10181499	10181562	.	+	.	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	intron	10181563	10181784	.	+	.	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	CDS	10181785	10181818	1	+	1	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	exon	10181785	10181818	.	+	.	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
Ledus.S1	AUGUSTUS	stop_codon	10181819	10181821	.	+	0	transcript_id "Ledus.S1G102600.t1"; gene_id "Ledus.S1G102600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg127.t1 is derived from g6988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	125933	127520	.	-	.	Ledus.S2G000900
Ledus.S2	AUGUSTUS	transcript	125933	127520	.	-	.	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	stop_codon	125930	125932	.	-	0	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	CDS	125933	125960	0.97	-	1	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	exon	125933	125960	.	-	.	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	intron	125961	126196	.	-	.	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	CDS	126197	126213	0.91	-	0	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	exon	126197	126213	.	-	.	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	intron	126214	126280	.	-	.	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	CDS	126281	126299	0.91	-	1	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	exon	126281	126299	.	-	.	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	intron	126300	126615	.	-	.	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	CDS	126616	126691	0.91	-	2	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	exon	126616	126691	.	-	.	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	intron	126692	127209	.	-	.	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	CDS	127210	127216	0.91	-	0	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	exon	127210	127216	.	-	.	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	intron	127217	127427	.	-	.	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	CDS	127428	127520	0.57	-	0	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	exon	127428	127520	.	-	.	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	start_codon	127518	127520	.	-	0	transcript_id "Ledus.S2G000900.t1"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	transcript	125933	127520	.	-	.	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	stop_codon	125930	125932	.	-	0	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	CDS	125933	125960	1	-	1	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	exon	125933	125960	.	-	.	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	intron	125961	126196	.	-	.	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	CDS	126197	126299	0.97	-	2	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	exon	126197	126299	.	-	.	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	intron	126300	126459	.	-	.	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	CDS	126460	126491	0.85	-	1	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	exon	126460	126491	.	-	.	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	intron	126492	126683	.	-	.	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	CDS	126684	126691	0.55	-	0	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	exon	126684	126691	.	-	.	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	intron	126692	127209	.	-	.	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	CDS	127210	127328	0.58	-	2	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	exon	127210	127328	.	-	.	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	intron	127329	127387	.	-	.	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	CDS	127388	127520	0.99	-	0	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	exon	127388	127520	.	-	.	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
Ledus.S2	AUGUSTUS	start_codon	127518	127520	.	-	0	transcript_id "Ledus.S2G000900.t2"; gene_id "Ledus.S2G000900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12242.t1 is derived from g5862.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10611499	10615260	.	-	.	Ledus.S4G139800
Ledus.S4	AUGUSTUS	transcript	10611499	10615260	.	-	.	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	stop_codon	10611496	10611498	.	-	0	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	CDS	10611499	10613811	0.59	-	0	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	exon	10611499	10613811	.	-	.	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	intron	10613812	10613916	.	-	.	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	CDS	10613917	10614057	0.99	-	0	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	exon	10613917	10614057	.	-	.	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	intron	10614058	10614200	.	-	.	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	CDS	10614201	10614372	1	-	1	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	exon	10614201	10614372	.	-	.	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	intron	10614373	10614531	.	-	.	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	CDS	10614532	10614635	1	-	0	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	exon	10614532	10614635	.	-	.	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	intron	10614636	10614826	.	-	.	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	CDS	10614827	10614959	1	-	1	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	exon	10614827	10614959	.	-	.	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	intron	10614960	10615114	.	-	.	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	CDS	10615115	10615260	0.86	-	0	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	exon	10615115	10615260	.	-	.	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
Ledus.S4	AUGUSTUS	start_codon	10615258	10615260	.	-	0	transcript_id "Ledus.S4G139800.t1"; gene_id "Ledus.S4G139800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg72.t1 is derived from g9485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	232066	233534	.	+	.	Ledus.C8G003200
Ledus.C8	AUGUSTUS	transcript	232066	233534	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	start_codon	232066	232068	.	+	0	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	CDS	232066	232309	1	+	0	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	exon	232066	232309	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	intron	232310	232399	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	CDS	232400	232455	1	+	2	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	exon	232400	232455	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	intron	232456	232520	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	CDS	232521	232576	1	+	0	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	exon	232521	232576	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	intron	232577	232706	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	CDS	232707	232764	1	+	1	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	exon	232707	232764	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	intron	232765	232850	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	CDS	232851	232925	1	+	0	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	exon	232851	232925	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	intron	232926	233014	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	CDS	233015	233104	1	+	0	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	exon	233015	233104	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	intron	233105	233204	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	CDS	233205	233282	1	+	0	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	exon	233205	233282	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	intron	233283	233370	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	CDS	233371	233411	1	+	0	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	exon	233371	233411	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	intron	233412	233509	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	CDS	233510	233534	1	+	1	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	exon	233510	233534	.	+	.	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
Ledus.C8	AUGUSTUS	stop_codon	233535	233537	.	+	0	transcript_id "Ledus.C8G003200.t1"; gene_id "Ledus.C8G003200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12829.t1 is derived from g6451.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15263770	15264275	.	+	.	Ledus.S4G198500
Ledus.S4	AUGUSTUS	transcript	15263770	15264275	.	+	.	transcript_id "Ledus.S4G198500.t1"; gene_id "Ledus.S4G198500"
Ledus.S4	AUGUSTUS	start_codon	15263770	15263772	.	+	0	transcript_id "Ledus.S4G198500.t1"; gene_id "Ledus.S4G198500"
Ledus.S4	AUGUSTUS	CDS	15263770	15264045	0.57	+	0	transcript_id "Ledus.S4G198500.t1"; gene_id "Ledus.S4G198500"
Ledus.S4	AUGUSTUS	exon	15263770	15264045	.	+	.	transcript_id "Ledus.S4G198500.t1"; gene_id "Ledus.S4G198500"
Ledus.S4	AUGUSTUS	intron	15264046	15264218	.	+	.	transcript_id "Ledus.S4G198500.t1"; gene_id "Ledus.S4G198500"
Ledus.S4	AUGUSTUS	CDS	15264219	15264275	0.5	+	0	transcript_id "Ledus.S4G198500.t1"; gene_id "Ledus.S4G198500"
Ledus.S4	AUGUSTUS	exon	15264219	15264275	.	+	.	transcript_id "Ledus.S4G198500.t1"; gene_id "Ledus.S4G198500"
Ledus.S4	AUGUSTUS	stop_codon	15264276	15264278	.	+	0	transcript_id "Ledus.S4G198500.t1"; gene_id "Ledus.S4G198500"
# This transcript jg12533.t2 is derived from g6154.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12534.t1 is derived from g6155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12756075	12758006	.	-	.	Ledus.S4G169000
Ledus.S4	AUGUSTUS	transcript	12756075	12758006	.	-	.	transcript_id "Ledus.S4G169000.t1"; gene_id "Ledus.S4G169000"
Ledus.S4	AUGUSTUS	stop_codon	12756072	12756074	.	-	0	transcript_id "Ledus.S4G169000.t1"; gene_id "Ledus.S4G169000"
Ledus.S4	AUGUSTUS	CDS	12756075	12758006	0.81	-	0	transcript_id "Ledus.S4G169000.t1"; gene_id "Ledus.S4G169000"
Ledus.S4	AUGUSTUS	exon	12756075	12758006	.	-	.	transcript_id "Ledus.S4G169000.t1"; gene_id "Ledus.S4G169000"
Ledus.S4	AUGUSTUS	start_codon	12758004	12758006	.	-	0	transcript_id "Ledus.S4G169000.t1"; gene_id "Ledus.S4G169000"
Ledus.S4	AUGUSTUS	transcript	12756075	12757937	.	-	.	transcript_id "Ledus.S4G169000.t2"; gene_id "Ledus.S4G169000"
Ledus.S4	AUGUSTUS	stop_codon	12756072	12756074	.	-	0	transcript_id "Ledus.S4G169000.t2"; gene_id "Ledus.S4G169000"
Ledus.S4	AUGUSTUS	CDS	12756075	12757937	0.36	-	0	transcript_id "Ledus.S4G169000.t2"; gene_id "Ledus.S4G169000"
Ledus.S4	AUGUSTUS	exon	12756075	12757937	.	-	.	transcript_id "Ledus.S4G169000.t2"; gene_id "Ledus.S4G169000"
Ledus.S4	AUGUSTUS	start_codon	12757935	12757937	.	-	0	transcript_id "Ledus.S4G169000.t2"; gene_id "Ledus.S4G169000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9190.t1 is derived from g10220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5300535	5301533	.	+	.	Ledus.S3G066700
Ledus.S3	AUGUSTUS	transcript	5300535	5301533	.	+	.	transcript_id "Ledus.S3G066700.t1"; gene_id "Ledus.S3G066700"
Ledus.S3	AUGUSTUS	start_codon	5300535	5300537	.	+	0	transcript_id "Ledus.S3G066700.t1"; gene_id "Ledus.S3G066700"
Ledus.S3	AUGUSTUS	CDS	5300535	5301037	0.82	+	0	transcript_id "Ledus.S3G066700.t1"; gene_id "Ledus.S3G066700"
Ledus.S3	AUGUSTUS	exon	5300535	5301037	.	+	.	transcript_id "Ledus.S3G066700.t1"; gene_id "Ledus.S3G066700"
Ledus.S3	AUGUSTUS	intron	5301038	5301118	.	+	.	transcript_id "Ledus.S3G066700.t1"; gene_id "Ledus.S3G066700"
Ledus.S3	AUGUSTUS	CDS	5301119	5301533	1	+	1	transcript_id "Ledus.S3G066700.t1"; gene_id "Ledus.S3G066700"
Ledus.S3	AUGUSTUS	exon	5301119	5301533	.	+	.	transcript_id "Ledus.S3G066700.t1"; gene_id "Ledus.S3G066700"
Ledus.S3	AUGUSTUS	stop_codon	5301534	5301536	.	+	0	transcript_id "Ledus.S3G066700.t1"; gene_id "Ledus.S3G066700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4989.t1 is derived from g2427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21005835	21007189	.	-	.	Ledus.S1G241000
Ledus.S1	AUGUSTUS	transcript	21005835	21007189	.	-	.	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	stop_codon	21005832	21005834	.	-	0	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	CDS	21005835	21005867	0.98	-	0	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	exon	21005835	21005867	.	-	.	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	intron	21005868	21005966	.	-	.	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	CDS	21005967	21006095	1	-	0	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	exon	21005967	21006095	.	-	.	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	intron	21006096	21006218	.	-	.	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	CDS	21006219	21006354	0.95	-	1	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	exon	21006219	21006354	.	-	.	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	intron	21006355	21006532	.	-	.	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	CDS	21006533	21006663	1	-	0	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	exon	21006533	21006663	.	-	.	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	intron	21006664	21006792	.	-	.	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	CDS	21006793	21006848	1	-	2	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	exon	21006793	21006848	.	-	.	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	intron	21006849	21007071	.	-	.	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	CDS	21007072	21007189	0.75	-	0	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	exon	21007072	21007189	.	-	.	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
Ledus.S1	AUGUSTUS	start_codon	21007187	21007189	.	-	0	transcript_id "Ledus.S1G241000.t1"; gene_id "Ledus.S1G241000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7423.t1 is derived from g12094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2352905	2375899	.	+	.	Ledus.S5G020100
Ledus.S5	AUGUSTUS	transcript	2352905	2375899	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	start_codon	2352905	2352907	.	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2352905	2353264	0.93	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2352905	2353264	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2353265	2353351	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2353352	2353468	0.99	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2353352	2353468	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2353469	2353558	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2353559	2353804	0.85	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2353559	2353804	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2353805	2353906	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2353907	2354026	0.63	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2353907	2354026	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2354027	2354136	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2354137	2354412	0.98	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2354137	2354412	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2354413	2354563	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2354564	2354875	0.95	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2354564	2354875	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2354876	2355041	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2355042	2355260	0.83	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2355042	2355260	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2355261	2355411	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2355412	2355549	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2355412	2355549	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2355550	2355720	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2355721	2355966	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2355721	2355966	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2355967	2356082	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2356083	2356223	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2356083	2356223	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2356224	2356377	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2356378	2356500	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2356378	2356500	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2356501	2356645	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2356646	2356735	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2356646	2356735	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2356736	2356993	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2356994	2357335	0.99	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2356994	2357335	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2357336	2357483	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2357484	2357648	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2357484	2357648	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2357649	2357834	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2357835	2358014	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2357835	2358014	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2358015	2358099	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2358100	2358245	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2358100	2358245	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2358246	2358336	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2358337	2358415	1	+	1	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2358337	2358415	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2358416	2358540	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2358541	2358641	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2358541	2358641	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2358642	2358791	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2358792	2358851	1	+	1	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2358792	2358851	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2358852	2358968	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2358969	2359119	0.67	+	1	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2358969	2359119	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2359120	2359234	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2359235	2359393	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2359235	2359393	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2359394	2359605	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2359606	2359704	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2359606	2359704	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2359705	2359965	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2359966	2360228	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2359966	2360228	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2360229	2360330	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2360331	2360499	1	+	1	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2360331	2360499	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2360500	2360636	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2360637	2360783	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2360637	2360783	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2360784	2360944	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2360945	2361112	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2360945	2361112	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2361113	2361279	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2361280	2361411	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2361280	2361411	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2361412	2361542	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2361543	2361746	0.99	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2361543	2361746	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2361747	2361868	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2361869	2362039	0.99	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2361869	2362039	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2362040	2362187	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2362188	2362303	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2362188	2362303	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2362304	2362480	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2362481	2362643	1	+	1	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2362481	2362643	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2362644	2362780	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2362781	2362918	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2362781	2362918	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2362919	2363048	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2363049	2363239	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2363049	2363239	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2363240	2363327	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2363328	2363712	1	+	1	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2363328	2363712	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2363713	2363799	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2363800	2364159	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2363800	2364159	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2364160	2364253	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2364254	2364649	0.83	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2364254	2364649	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2364650	2364751	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2364752	2364904	0.9	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2364752	2364904	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2364905	2365022	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2365023	2365321	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2365023	2365321	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2365322	2365529	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2365530	2365674	1	+	1	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2365530	2365674	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2365675	2365766	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2365767	2365943	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2365767	2365943	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2365944	2366099	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2366100	2366210	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2366100	2366210	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2366211	2366386	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2366387	2366563	0.72	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2366387	2366563	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2366564	2366668	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2366669	2366878	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2366669	2366878	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2366879	2367092	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2367093	2367227	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2367093	2367227	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2367228	2367409	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2367410	2367622	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2367410	2367622	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2367623	2367870	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2367871	2368014	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2367871	2368014	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2368015	2368172	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2368173	2368355	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2368173	2368355	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2368356	2368429	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2368430	2368656	0.95	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2368430	2368656	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2368657	2368759	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2368760	2368969	0.95	+	1	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2368760	2368969	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2368970	2369067	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2369068	2369290	1	+	1	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2369068	2369290	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2369291	2369383	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2369384	2369689	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2369384	2369689	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2369690	2369920	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2369921	2370025	0.9	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2369921	2370025	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2370026	2370129	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2370130	2370245	0.93	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2370130	2370245	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2370246	2370378	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2370379	2370484	1	+	1	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2370379	2370484	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2370485	2370603	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2370604	2370801	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2370604	2370801	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2370802	2370956	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2370957	2371130	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2370957	2371130	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2371131	2371260	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2371261	2371326	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2371261	2371326	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
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Ledus.S5	AUGUSTUS	exon	2371485	2371619	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
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Ledus.S5	AUGUSTUS	intron	2373281	2373370	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2373371	2373509	0.99	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2373371	2373509	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2373510	2373589	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2373590	2373711	1	+	2	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2373590	2373711	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2373712	2373798	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2373799	2373999	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2373799	2373999	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2374000	2374119	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2374120	2374311	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2374120	2374311	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2374312	2374391	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2374392	2374835	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2374392	2374835	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2374836	2374931	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2374932	2375164	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2374932	2375164	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2375165	2375266	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2375267	2375585	1	+	1	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2375267	2375585	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2375586	2375665	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2375666	2375899	1	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2375666	2375899	.	+	.	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	stop_codon	2375900	2375902	.	+	0	transcript_id "Ledus.S5G020100.t1"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	transcript	2352905	2355745	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	start_codon	2352905	2352907	.	+	0	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2352905	2353264	0.93	+	0	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2352905	2353264	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2353265	2353351	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2353352	2353468	1	+	0	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2353352	2353468	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2353469	2353558	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2353559	2353804	0.91	+	0	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2353559	2353804	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2353805	2353906	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2353907	2354026	0.54	+	0	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2353907	2354026	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2354027	2354136	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2354137	2354412	0.97	+	0	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2354137	2354412	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2354413	2354563	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2354564	2354875	0.94	+	0	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2354564	2354875	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2354876	2355041	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2355042	2355260	0.75	+	0	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2355042	2355260	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2355261	2355411	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2355412	2355554	1	+	0	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2355412	2355554	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	intron	2355555	2355720	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	CDS	2355721	2355745	0.8	+	1	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	exon	2355721	2355745	.	+	.	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
Ledus.S5	AUGUSTUS	stop_codon	2355746	2355748	.	+	0	transcript_id "Ledus.S5G020100.t2"; gene_id "Ledus.S5G020100"
# This transcript jg704.t2 is derived from g7565.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg705.t1 is derived from g7566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4334299	4335417	.	+	.	Ledus.S2G058700
Ledus.S2	AUGUSTUS	transcript	4334299	4335417	.	+	.	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	start_codon	4334299	4334301	.	+	0	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	CDS	4334299	4334490	0.81	+	0	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	exon	4334299	4334490	.	+	.	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	intron	4334491	4334575	.	+	.	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	CDS	4334576	4334797	1	+	0	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	exon	4334576	4334797	.	+	.	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	intron	4334798	4334881	.	+	.	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	CDS	4334882	4334994	1	+	0	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	exon	4334882	4334994	.	+	.	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	intron	4334995	4335080	.	+	.	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	CDS	4335081	4335417	0.69	+	1	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	exon	4335081	4335417	.	+	.	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
Ledus.S2	AUGUSTUS	stop_codon	4335418	4335420	.	+	0	transcript_id "Ledus.S2G058700.t1"; gene_id "Ledus.S2G058700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9970.t1 is derived from g11000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11619837	11620869	.	-	.	Ledus.S3G144700
Ledus.S3	AUGUSTUS	transcript	11619837	11620869	.	-	.	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	stop_codon	11619834	11619836	.	-	0	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	CDS	11619837	11620122	1	-	1	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	exon	11619837	11620122	.	-	.	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	intron	11620123	11620198	.	-	.	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	CDS	11620199	11620302	1	-	0	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	exon	11620199	11620302	.	-	.	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	intron	11620303	11620379	.	-	.	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	CDS	11620380	11620592	1	-	0	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	exon	11620380	11620592	.	-	.	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	intron	11620593	11620671	.	-	.	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	CDS	11620672	11620869	1	-	0	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	exon	11620672	11620869	.	-	.	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
Ledus.S3	AUGUSTUS	start_codon	11620867	11620869	.	-	0	transcript_id "Ledus.S3G144700.t1"; gene_id "Ledus.S3G144700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2529.t1 is derived from g9392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18615849	18616512	.	-	.	Ledus.S2G241100
Ledus.S2	AUGUSTUS	transcript	18615849	18616512	.	-	.	transcript_id "Ledus.S2G241100.t1"; gene_id "Ledus.S2G241100"
Ledus.S2	AUGUSTUS	stop_codon	18615846	18615848	.	-	0	transcript_id "Ledus.S2G241100.t1"; gene_id "Ledus.S2G241100"
Ledus.S2	AUGUSTUS	CDS	18615849	18616016	0.99	-	0	transcript_id "Ledus.S2G241100.t1"; gene_id "Ledus.S2G241100"
Ledus.S2	AUGUSTUS	exon	18615849	18616016	.	-	.	transcript_id "Ledus.S2G241100.t1"; gene_id "Ledus.S2G241100"
Ledus.S2	AUGUSTUS	intron	18616017	18616110	.	-	.	transcript_id "Ledus.S2G241100.t1"; gene_id "Ledus.S2G241100"
Ledus.S2	AUGUSTUS	CDS	18616111	18616278	0.71	-	0	transcript_id "Ledus.S2G241100.t1"; gene_id "Ledus.S2G241100"
Ledus.S2	AUGUSTUS	exon	18616111	18616278	.	-	.	transcript_id "Ledus.S2G241100.t1"; gene_id "Ledus.S2G241100"
Ledus.S2	AUGUSTUS	intron	18616279	18616371	.	-	.	transcript_id "Ledus.S2G241100.t1"; gene_id "Ledus.S2G241100"
Ledus.S2	AUGUSTUS	CDS	18616372	18616512	0.71	-	0	transcript_id "Ledus.S2G241100.t1"; gene_id "Ledus.S2G241100"
Ledus.S2	AUGUSTUS	exon	18616372	18616512	.	-	.	transcript_id "Ledus.S2G241100.t1"; gene_id "Ledus.S2G241100"
Ledus.S2	AUGUSTUS	start_codon	18616510	18616512	.	-	0	transcript_id "Ledus.S2G241100.t1"; gene_id "Ledus.S2G241100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13003.t1 is derived from g6813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2411237	2411668	.	-	.	Ledus.S6G006500
Ledus.S6	AUGUSTUS	transcript	2411237	2411668	.	-	.	transcript_id "Ledus.S6G006500.t1"; gene_id "Ledus.S6G006500"
Ledus.S6	AUGUSTUS	stop_codon	2411234	2411236	.	-	0	transcript_id "Ledus.S6G006500.t1"; gene_id "Ledus.S6G006500"
Ledus.S6	AUGUSTUS	CDS	2411237	2411668	0.55	-	0	transcript_id "Ledus.S6G006500.t1"; gene_id "Ledus.S6G006500"
Ledus.S6	AUGUSTUS	exon	2411237	2411668	.	-	.	transcript_id "Ledus.S6G006500.t1"; gene_id "Ledus.S6G006500"
Ledus.S6	AUGUSTUS	start_codon	2411666	2411668	.	-	0	transcript_id "Ledus.S6G006500.t1"; gene_id "Ledus.S6G006500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8782.t1 is derived from g9812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1940789	1942018	.	-	.	Ledus.S3G025900
Ledus.S3	AUGUSTUS	transcript	1940789	1942018	.	-	.	transcript_id "Ledus.S3G025900.t1"; gene_id "Ledus.S3G025900"
Ledus.S3	AUGUSTUS	stop_codon	1940786	1940788	.	-	0	transcript_id "Ledus.S3G025900.t1"; gene_id "Ledus.S3G025900"
Ledus.S3	AUGUSTUS	CDS	1940789	1942018	0.97	-	0	transcript_id "Ledus.S3G025900.t1"; gene_id "Ledus.S3G025900"
Ledus.S3	AUGUSTUS	exon	1940789	1942018	.	-	.	transcript_id "Ledus.S3G025900.t1"; gene_id "Ledus.S3G025900"
Ledus.S3	AUGUSTUS	start_codon	1942016	1942018	.	-	0	transcript_id "Ledus.S3G025900.t1"; gene_id "Ledus.S3G025900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9768.t1 is derived from g10798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9686264	9688954	.	+	.	Ledus.S3G124500
Ledus.S3	AUGUSTUS	transcript	9686264	9688954	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	start_codon	9686264	9686266	.	+	0	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	CDS	9686264	9686341	0.8	+	0	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	exon	9686264	9686341	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	intron	9686342	9686945	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	CDS	9686946	9687074	1	+	0	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	exon	9686946	9687074	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	intron	9687075	9687173	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	CDS	9687174	9687239	1	+	0	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	exon	9687174	9687239	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	intron	9687240	9687364	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	CDS	9687365	9687526	1	+	0	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	exon	9687365	9687526	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	intron	9687527	9687603	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	CDS	9687604	9687717	1	+	0	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	exon	9687604	9687717	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	intron	9687718	9687812	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	CDS	9687813	9687884	1	+	0	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	exon	9687813	9687884	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	intron	9687885	9687970	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	CDS	9687971	9688054	1	+	0	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	exon	9687971	9688054	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	intron	9688055	9688199	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	CDS	9688200	9688300	1	+	0	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	exon	9688200	9688300	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	intron	9688301	9688381	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	CDS	9688382	9688463	1	+	1	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	exon	9688382	9688463	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	intron	9688464	9688576	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	CDS	9688577	9688954	0.87	+	0	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	exon	9688577	9688954	.	+	.	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
Ledus.S3	AUGUSTUS	stop_codon	9688955	9688957	.	+	0	transcript_id "Ledus.S3G124500.t1"; gene_id "Ledus.S3G124500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4551.t1 is derived from g1988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17627752	17628345	.	-	.	Ledus.S1G197200
Ledus.S1	AUGUSTUS	transcript	17627752	17628345	.	-	.	transcript_id "Ledus.S1G197200.t1"; gene_id "Ledus.S1G197200"
Ledus.S1	AUGUSTUS	stop_codon	17627749	17627751	.	-	0	transcript_id "Ledus.S1G197200.t1"; gene_id "Ledus.S1G197200"
Ledus.S1	AUGUSTUS	CDS	17627752	17628345	0.88	-	0	transcript_id "Ledus.S1G197200.t1"; gene_id "Ledus.S1G197200"
Ledus.S1	AUGUSTUS	exon	17627752	17628345	.	-	.	transcript_id "Ledus.S1G197200.t1"; gene_id "Ledus.S1G197200"
Ledus.S1	AUGUSTUS	start_codon	17628343	17628345	.	-	0	transcript_id "Ledus.S1G197200.t1"; gene_id "Ledus.S1G197200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5190.t1 is derived from g2629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22344652	22345134	.	-	.	Ledus.S1G261100
Ledus.S1	AUGUSTUS	transcript	22344652	22345134	.	-	.	transcript_id "Ledus.S1G261100.t1"; gene_id "Ledus.S1G261100"
Ledus.S1	AUGUSTUS	stop_codon	22344649	22344651	.	-	0	transcript_id "Ledus.S1G261100.t1"; gene_id "Ledus.S1G261100"
Ledus.S1	AUGUSTUS	CDS	22344652	22344801	0.68	-	0	transcript_id "Ledus.S1G261100.t1"; gene_id "Ledus.S1G261100"
Ledus.S1	AUGUSTUS	exon	22344652	22344801	.	-	.	transcript_id "Ledus.S1G261100.t1"; gene_id "Ledus.S1G261100"
Ledus.S1	AUGUSTUS	intron	22344802	22344910	.	-	.	transcript_id "Ledus.S1G261100.t1"; gene_id "Ledus.S1G261100"
Ledus.S1	AUGUSTUS	CDS	22344911	22345051	0.68	-	0	transcript_id "Ledus.S1G261100.t1"; gene_id "Ledus.S1G261100"
Ledus.S1	AUGUSTUS	exon	22344911	22345051	.	-	.	transcript_id "Ledus.S1G261100.t1"; gene_id "Ledus.S1G261100"
Ledus.S1	AUGUSTUS	intron	22345052	22345131	.	-	.	transcript_id "Ledus.S1G261100.t1"; gene_id "Ledus.S1G261100"
Ledus.S1	AUGUSTUS	CDS	22345132	22345134	0.99	-	0	transcript_id "Ledus.S1G261100.t1"; gene_id "Ledus.S1G261100"
Ledus.S1	AUGUSTUS	exon	22345132	22345134	.	-	.	transcript_id "Ledus.S1G261100.t1"; gene_id "Ledus.S1G261100"
Ledus.S1	AUGUSTUS	start_codon	22345132	22345134	.	-	0	transcript_id "Ledus.S1G261100.t1"; gene_id "Ledus.S1G261100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8768.t1 is derived from g9798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1890049	1891816	.	+	.	Ledus.S3G024500
Ledus.S3	AUGUSTUS	transcript	1890049	1891816	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	start_codon	1890049	1890051	.	+	0	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	CDS	1890049	1890166	0.92	+	0	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	exon	1890049	1890166	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	intron	1890167	1890332	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	CDS	1890333	1890520	1	+	2	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	exon	1890333	1890520	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	intron	1890521	1890729	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	CDS	1890730	1890800	1	+	0	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	exon	1890730	1890800	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	intron	1890801	1890895	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	CDS	1890896	1890933	1	+	1	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	exon	1890896	1890933	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	intron	1890934	1891047	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	CDS	1891048	1891158	1	+	2	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	exon	1891048	1891158	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	intron	1891159	1891239	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	CDS	1891240	1891336	1	+	2	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	exon	1891240	1891336	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	intron	1891337	1891466	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	CDS	1891467	1891602	1	+	1	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	exon	1891467	1891602	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	intron	1891603	1891696	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	CDS	1891697	1891816	0.96	+	0	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	exon	1891697	1891816	.	+	.	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
Ledus.S3	AUGUSTUS	stop_codon	1891817	1891819	.	+	0	transcript_id "Ledus.S3G024500.t1"; gene_id "Ledus.S3G024500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1709.t1 is derived from g8570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12013285	12013743	.	+	.	Ledus.S2G159100
Ledus.S2	AUGUSTUS	transcript	12013285	12013743	.	+	.	transcript_id "Ledus.S2G159100.t1"; gene_id "Ledus.S2G159100"
Ledus.S2	AUGUSTUS	start_codon	12013285	12013287	.	+	0	transcript_id "Ledus.S2G159100.t1"; gene_id "Ledus.S2G159100"
Ledus.S2	AUGUSTUS	CDS	12013285	12013743	0.23	+	0	transcript_id "Ledus.S2G159100.t1"; gene_id "Ledus.S2G159100"
Ledus.S2	AUGUSTUS	exon	12013285	12013743	.	+	.	transcript_id "Ledus.S2G159100.t1"; gene_id "Ledus.S2G159100"
Ledus.S2	AUGUSTUS	stop_codon	12013744	12013746	.	+	0	transcript_id "Ledus.S2G159100.t1"; gene_id "Ledus.S2G159100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3076.t1 is derived from g511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5723635	5724351	.	-	.	Ledus.S1G049700
Ledus.S1	AUGUSTUS	transcript	5723635	5724351	.	-	.	transcript_id "Ledus.S1G049700.t1"; gene_id "Ledus.S1G049700"
Ledus.S1	AUGUSTUS	stop_codon	5723632	5723634	.	-	0	transcript_id "Ledus.S1G049700.t1"; gene_id "Ledus.S1G049700"
Ledus.S1	AUGUSTUS	CDS	5723635	5724351	0.6	-	0	transcript_id "Ledus.S1G049700.t1"; gene_id "Ledus.S1G049700"
Ledus.S1	AUGUSTUS	exon	5723635	5724351	.	-	.	transcript_id "Ledus.S1G049700.t1"; gene_id "Ledus.S1G049700"
Ledus.S1	AUGUSTUS	start_codon	5724349	5724351	.	-	0	transcript_id "Ledus.S1G049700.t1"; gene_id "Ledus.S1G049700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10687.t1 is derived from g11717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17096611	17096940	.	-	.	Ledus.S3G216400
Ledus.S3	AUGUSTUS	transcript	17096611	17096940	.	-	.	transcript_id "Ledus.S3G216400.t1"; gene_id "Ledus.S3G216400"
Ledus.S3	AUGUSTUS	stop_codon	17096608	17096610	.	-	0	transcript_id "Ledus.S3G216400.t1"; gene_id "Ledus.S3G216400"
Ledus.S3	AUGUSTUS	CDS	17096611	17096940	0.57	-	0	transcript_id "Ledus.S3G216400.t1"; gene_id "Ledus.S3G216400"
Ledus.S3	AUGUSTUS	exon	17096611	17096940	.	-	.	transcript_id "Ledus.S3G216400.t1"; gene_id "Ledus.S3G216400"
Ledus.S3	AUGUSTUS	start_codon	17096938	17096940	.	-	0	transcript_id "Ledus.S3G216400.t1"; gene_id "Ledus.S3G216400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4673.t1 is derived from g2111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18923803	18928502	.	-	.	Ledus.S1G209400
Ledus.S1	AUGUSTUS	transcript	18923803	18928502	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	stop_codon	18923800	18923802	.	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18923803	18923961	0.6	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18923803	18923961	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18923962	18924056	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18924057	18924134	0.8	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18924057	18924134	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18924135	18924244	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18924245	18924298	0.81	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18924245	18924298	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18924299	18924392	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18924393	18924521	1	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18924393	18924521	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18924522	18924629	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18924630	18924881	1	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18924630	18924881	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18924882	18924982	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18924983	18925070	1	-	1	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18924983	18925070	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18925071	18925280	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18925281	18925390	1	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18925281	18925390	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18925391	18925467	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18925468	18925572	1	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18925468	18925572	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18925573	18925659	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18925660	18925770	0.96	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18925660	18925770	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18925771	18925863	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18925864	18925920	0.79	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18925864	18925920	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18925921	18926107	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18926108	18926374	0.84	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18926108	18926374	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18926375	18926531	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18926532	18926639	0.42	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18926532	18926639	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18926640	18926718	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18926719	18926850	1	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18926719	18926850	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18926851	18926976	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18926977	18927154	1	-	1	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18926977	18927154	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18927155	18927238	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18927239	18927520	1	-	1	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18927239	18927520	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18927521	18927612	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18927613	18927713	1	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18927613	18927713	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18927714	18927799	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18927800	18927850	1	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18927800	18927850	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18927851	18928012	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18928013	18928096	0.55	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18928013	18928096	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	intron	18928097	18928253	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	CDS	18928254	18928502	0.83	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	exon	18928254	18928502	.	-	.	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
Ledus.S1	AUGUSTUS	start_codon	18928500	18928502	.	-	0	transcript_id "Ledus.S1G209400.t1"; gene_id "Ledus.S1G209400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6962.t1 is derived from g6493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	395477	401090	.	-	.	Ledus.C7G002300
Ledus.C7	AUGUSTUS	transcript	395477	401090	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	stop_codon	395474	395476	.	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	395477	395594	0.97	-	1	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	395477	395594	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	395595	395719	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	395720	396285	0.94	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	395720	396285	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	396286	396481	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	396482	396563	1	-	1	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	396482	396563	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	396564	396702	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	396703	396866	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	396703	396866	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	396867	396994	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	396995	397309	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	396995	397309	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	397310	397486	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	397487	397576	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	397487	397576	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	397577	397713	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	397714	397839	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	397714	397839	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	397840	398064	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	398065	398196	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	398065	398196	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	398197	398287	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	398288	398500	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	398288	398500	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	398501	398597	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	398598	398639	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	398598	398639	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	398640	398739	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	398740	398835	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	398740	398835	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	398836	398924	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	398925	398972	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	398925	398972	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	398973	399243	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	399244	399309	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	399244	399309	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	399310	399512	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	399513	399557	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	399513	399557	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	399558	400104	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	400105	400113	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	400105	400113	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	400114	400240	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	400241	400303	1	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	400241	400303	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	400304	400399	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	400400	400470	1	-	2	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	400400	400470	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	400471	400586	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	400587	400687	1	-	1	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	400587	400687	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	400688	400826	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	400827	400903	0.94	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	400827	400903	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	intron	400904	401021	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	CDS	401022	401090	0.36	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	exon	401022	401090	.	-	.	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
Ledus.C7	AUGUSTUS	start_codon	401088	401090	.	-	0	transcript_id "Ledus.C7G002300.t1"; gene_id "Ledus.C7G002300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4240.t1 is derived from g1676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15713722	15714378	.	-	.	Ledus.S1G166100
Ledus.S1	AUGUSTUS	transcript	15713722	15714378	.	-	.	transcript_id "Ledus.S1G166100.t1"; gene_id "Ledus.S1G166100"
Ledus.S1	AUGUSTUS	stop_codon	15713719	15713721	.	-	0	transcript_id "Ledus.S1G166100.t1"; gene_id "Ledus.S1G166100"
Ledus.S1	AUGUSTUS	CDS	15713722	15714378	0.9	-	0	transcript_id "Ledus.S1G166100.t1"; gene_id "Ledus.S1G166100"
Ledus.S1	AUGUSTUS	exon	15713722	15714378	.	-	.	transcript_id "Ledus.S1G166100.t1"; gene_id "Ledus.S1G166100"
Ledus.S1	AUGUSTUS	start_codon	15714376	15714378	.	-	0	transcript_id "Ledus.S1G166100.t1"; gene_id "Ledus.S1G166100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg83.t1 is derived from g9496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	324837	326393	.	-	.	Ledus.C8G004300
Ledus.C8	AUGUSTUS	transcript	324837	326393	.	-	.	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	stop_codon	324834	324836	.	-	0	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	CDS	324837	324935	0.58	-	0	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	exon	324837	324935	.	-	.	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	intron	324936	325037	.	-	.	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	CDS	325038	325274	0.99	-	0	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	exon	325038	325274	.	-	.	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	intron	325275	325353	.	-	.	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	CDS	325354	325527	1	-	0	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	exon	325354	325527	.	-	.	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	intron	325528	325704	.	-	.	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	CDS	325705	325844	1	-	2	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	exon	325705	325844	.	-	.	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	intron	325845	325927	.	-	.	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	CDS	325928	326393	1	-	0	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	exon	325928	326393	.	-	.	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
Ledus.C8	AUGUSTUS	start_codon	326391	326393	.	-	0	transcript_id "Ledus.C8G004300.t1"; gene_id "Ledus.C8G004300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3358.t1 is derived from g793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7834086	7834649	.	+	.	Ledus.S1G077900
Ledus.S1	AUGUSTUS	transcript	7834086	7834649	.	+	.	transcript_id "Ledus.S1G077900.t1"; gene_id "Ledus.S1G077900"
Ledus.S1	AUGUSTUS	start_codon	7834086	7834088	.	+	0	transcript_id "Ledus.S1G077900.t1"; gene_id "Ledus.S1G077900"
Ledus.S1	AUGUSTUS	CDS	7834086	7834278	0.33	+	0	transcript_id "Ledus.S1G077900.t1"; gene_id "Ledus.S1G077900"
Ledus.S1	AUGUSTUS	exon	7834086	7834278	.	+	.	transcript_id "Ledus.S1G077900.t1"; gene_id "Ledus.S1G077900"
Ledus.S1	AUGUSTUS	intron	7834279	7834446	.	+	.	transcript_id "Ledus.S1G077900.t1"; gene_id "Ledus.S1G077900"
Ledus.S1	AUGUSTUS	CDS	7834447	7834649	0.61	+	2	transcript_id "Ledus.S1G077900.t1"; gene_id "Ledus.S1G077900"
Ledus.S1	AUGUSTUS	exon	7834447	7834649	.	+	.	transcript_id "Ledus.S1G077900.t1"; gene_id "Ledus.S1G077900"
Ledus.S1	AUGUSTUS	stop_codon	7834650	7834652	.	+	0	transcript_id "Ledus.S1G077900.t1"; gene_id "Ledus.S1G077900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2549.t1 is derived from g9412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18883033	18887156	.	+	.	Ledus.S2G243100
Ledus.S2	AUGUSTUS	transcript	18883033	18887156	.	+	.	transcript_id "Ledus.S2G243100.t1"; gene_id "Ledus.S2G243100"
Ledus.S2	AUGUSTUS	start_codon	18883033	18883035	.	+	0	transcript_id "Ledus.S2G243100.t1"; gene_id "Ledus.S2G243100"
Ledus.S2	AUGUSTUS	CDS	18883033	18885411	0.91	+	0	transcript_id "Ledus.S2G243100.t1"; gene_id "Ledus.S2G243100"
Ledus.S2	AUGUSTUS	exon	18883033	18885411	.	+	.	transcript_id "Ledus.S2G243100.t1"; gene_id "Ledus.S2G243100"
Ledus.S2	AUGUSTUS	intron	18885412	18885868	.	+	.	transcript_id "Ledus.S2G243100.t1"; gene_id "Ledus.S2G243100"
Ledus.S2	AUGUSTUS	CDS	18885869	18886593	0.84	+	0	transcript_id "Ledus.S2G243100.t1"; gene_id "Ledus.S2G243100"
Ledus.S2	AUGUSTUS	exon	18885869	18886593	.	+	.	transcript_id "Ledus.S2G243100.t1"; gene_id "Ledus.S2G243100"
Ledus.S2	AUGUSTUS	intron	18886594	18886687	.	+	.	transcript_id "Ledus.S2G243100.t1"; gene_id "Ledus.S2G243100"
Ledus.S2	AUGUSTUS	CDS	18886688	18887156	0.88	+	1	transcript_id "Ledus.S2G243100.t1"; gene_id "Ledus.S2G243100"
Ledus.S2	AUGUSTUS	exon	18886688	18887156	.	+	.	transcript_id "Ledus.S2G243100.t1"; gene_id "Ledus.S2G243100"
Ledus.S2	AUGUSTUS	stop_codon	18887157	18887159	.	+	0	transcript_id "Ledus.S2G243100.t1"; gene_id "Ledus.S2G243100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg778.t1 is derived from g7639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5038956	5041325	.	+	.	Ledus.S2G066000
Ledus.S2	AUGUSTUS	transcript	5038956	5041325	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	start_codon	5038956	5038958	.	+	0	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5038956	5039055	0.96	+	0	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5038956	5039055	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	intron	5039056	5039174	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5039175	5039326	1	+	2	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5039175	5039326	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	intron	5039327	5039581	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5039582	5039641	1	+	0	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5039582	5039641	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	intron	5039642	5039950	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5039951	5040154	0.98	+	0	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5039951	5040154	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	intron	5040155	5040287	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5040288	5040473	1	+	0	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5040288	5040473	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	intron	5040474	5040585	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5040586	5040843	1	+	0	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5040586	5040843	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	intron	5040844	5040965	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5040966	5041325	0.99	+	0	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5040966	5041325	.	+	.	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	stop_codon	5041326	5041328	.	+	0	transcript_id "Ledus.S2G066000.t1"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	transcript	5038956	5041325	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	start_codon	5038956	5038958	.	+	0	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5038956	5039055	0.99	+	0	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5038956	5039055	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	intron	5039056	5039174	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5039175	5039326	1	+	2	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5039175	5039326	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	intron	5039327	5039581	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5039582	5039641	1	+	0	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5039582	5039641	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	intron	5039642	5039917	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5039918	5040154	0.99	+	0	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5039918	5040154	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	intron	5040155	5040287	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5040288	5040473	0.99	+	0	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5040288	5040473	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	intron	5040474	5040585	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5040586	5040843	1	+	0	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5040586	5040843	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	intron	5040844	5040965	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	CDS	5040966	5041325	0.97	+	0	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	exon	5040966	5041325	.	+	.	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
Ledus.S2	AUGUSTUS	stop_codon	5041326	5041328	.	+	0	transcript_id "Ledus.S2G066000.t2"; gene_id "Ledus.S2G066000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12625.t1 is derived from g6247.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13352399	13357342	.	-	.	Ledus.S4G178100
Ledus.S4	AUGUSTUS	transcript	13352399	13357342	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	stop_codon	13352396	13352398	.	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13352399	13352482	0.53	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13352399	13352482	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13352483	13352589	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13352590	13352640	0.96	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13352590	13352640	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13352641	13352724	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13352725	13352813	1	-	2	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13352725	13352813	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13352814	13352912	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13352913	13352996	1	-	2	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13352913	13352996	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13352997	13353096	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13353097	13353144	1	-	2	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13353097	13353144	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13353145	13353224	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13353225	13353256	1	-	1	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13353225	13353256	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13353257	13353352	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13353353	13353486	0.4	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13353353	13353486	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13353487	13353962	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13353963	13354169	0.75	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13353963	13354169	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13354170	13354324	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13354325	13354438	1	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13354325	13354438	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13354439	13354582	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13354583	13354689	0.99	-	2	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13354583	13354689	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13354690	13354793	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13354794	13354937	0.95	-	2	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13354794	13354937	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13354938	13355069	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13355070	13355184	1	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13355070	13355184	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13355185	13355285	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13355286	13355387	0.98	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13355286	13355387	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13355388	13355525	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13355526	13355600	1	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13355526	13355600	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13355601	13355674	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13355675	13355860	1	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13355675	13355860	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13355861	13355975	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13355976	13356065	1	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13355976	13356065	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13356066	13356307	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13356308	13356432	1	-	2	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13356308	13356432	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13356433	13356741	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13356742	13356805	0.99	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13356742	13356805	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13356806	13356896	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13356897	13357071	0.34	-	1	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13356897	13357071	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13357072	13357157	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13357158	13357342	0.94	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13357158	13357342	.	-	.	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	start_codon	13357340	13357342	.	-	0	transcript_id "Ledus.S4G178100.t1"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	transcript	13352399	13357342	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	stop_codon	13352396	13352398	.	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13352399	13352482	0.5	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13352399	13352482	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13352483	13352589	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13352590	13352640	0.99	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13352590	13352640	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13352641	13352724	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13352725	13352813	1	-	2	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13352725	13352813	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13352814	13352912	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13352913	13352996	1	-	2	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13352913	13352996	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13352997	13353096	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13353097	13353144	1	-	2	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13353097	13353144	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13353145	13353224	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13353225	13353256	1	-	1	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13353225	13353256	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13353257	13353352	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13353353	13353486	0.3	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13353353	13353486	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13353487	13353962	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13353963	13354169	0.73	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13353963	13354169	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13354170	13354324	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13354325	13354438	1	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13354325	13354438	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13354439	13354582	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13354583	13354689	1	-	2	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13354583	13354689	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13354690	13354793	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13354794	13354937	0.96	-	2	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13354794	13354937	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13354938	13355069	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13355070	13355184	1	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13355070	13355184	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13355185	13355285	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13355286	13355387	0.98	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13355286	13355387	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13355388	13355525	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13355526	13355600	1	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13355526	13355600	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13355601	13355674	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13355675	13355860	1	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13355675	13355860	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13355861	13355975	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13355976	13356065	1	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13355976	13356065	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13356066	13356483	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13356484	13356608	0.76	-	2	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13356484	13356608	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13356609	13356741	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13356742	13356805	0.93	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13356742	13356805	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13356806	13356896	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13356897	13357071	0.33	-	1	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13356897	13357071	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	intron	13357072	13357157	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	CDS	13357158	13357342	0.84	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	exon	13357158	13357342	.	-	.	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
Ledus.S4	AUGUSTUS	start_codon	13357340	13357342	.	-	0	transcript_id "Ledus.S4G178100.t2"; gene_id "Ledus.S4G178100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12180.t1 is derived from g5799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10164201	10166128	.	-	.	Ledus.S4G133600
Ledus.S4	AUGUSTUS	transcript	10164201	10166128	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	stop_codon	10164198	10164200	.	-	0	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	CDS	10164201	10164305	0.97	-	0	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	exon	10164201	10164305	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	intron	10164306	10164429	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	CDS	10164430	10164703	1	-	1	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	exon	10164430	10164703	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	intron	10164704	10164798	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	CDS	10164799	10164922	1	-	2	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	exon	10164799	10164922	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	intron	10164923	10165096	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	CDS	10165097	10165205	1	-	0	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	exon	10165097	10165205	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	intron	10165206	10165294	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	CDS	10165295	10165441	1	-	0	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	exon	10165295	10165441	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	intron	10165442	10165728	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	CDS	10165729	10165814	1	-	2	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	exon	10165729	10165814	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	intron	10165815	10165956	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	CDS	10165957	10166128	0.87	-	0	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	exon	10165957	10166128	.	-	.	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
Ledus.S4	AUGUSTUS	start_codon	10166126	10166128	.	-	0	transcript_id "Ledus.S4G133600.t1"; gene_id "Ledus.S4G133600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7559.t1 is derived from g12230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4055301	4057522	.	+	.	Ledus.S5G033700
Ledus.S5	AUGUSTUS	transcript	4055301	4057522	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	start_codon	4055301	4055303	.	+	0	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	CDS	4055301	4055564	1	+	0	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	exon	4055301	4055564	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	intron	4055565	4055806	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	CDS	4055807	4056099	1	+	0	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	exon	4055807	4056099	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	intron	4056100	4056277	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	CDS	4056278	4056332	1	+	1	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	exon	4056278	4056332	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	intron	4056333	4056465	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	CDS	4056466	4056546	0.69	+	0	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	exon	4056466	4056546	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	intron	4056547	4056652	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	CDS	4056653	4056749	1	+	0	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	exon	4056653	4056749	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	intron	4056750	4056872	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	CDS	4056873	4056940	1	+	2	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	exon	4056873	4056940	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	intron	4056941	4057030	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	CDS	4057031	4057129	1	+	0	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	exon	4057031	4057129	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	intron	4057130	4057248	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	CDS	4057249	4057290	1	+	0	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	exon	4057249	4057290	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	intron	4057291	4057378	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	CDS	4057379	4057522	1	+	0	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	exon	4057379	4057522	.	+	.	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
Ledus.S5	AUGUSTUS	stop_codon	4057523	4057525	.	+	0	transcript_id "Ledus.S5G033700.t1"; gene_id "Ledus.S5G033700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4085.t1 is derived from g1521.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14528534	14530055	.	+	.	Ledus.S1G150600
Ledus.S1	AUGUSTUS	transcript	14528534	14530055	.	+	.	transcript_id "Ledus.S1G150600.t1"; gene_id "Ledus.S1G150600"
Ledus.S1	AUGUSTUS	start_codon	14528534	14528536	.	+	0	transcript_id "Ledus.S1G150600.t1"; gene_id "Ledus.S1G150600"
Ledus.S1	AUGUSTUS	CDS	14528534	14528978	0.87	+	0	transcript_id "Ledus.S1G150600.t1"; gene_id "Ledus.S1G150600"
Ledus.S1	AUGUSTUS	exon	14528534	14528978	.	+	.	transcript_id "Ledus.S1G150600.t1"; gene_id "Ledus.S1G150600"
Ledus.S1	AUGUSTUS	intron	14528979	14529060	.	+	.	transcript_id "Ledus.S1G150600.t1"; gene_id "Ledus.S1G150600"
Ledus.S1	AUGUSTUS	CDS	14529061	14530055	1	+	2	transcript_id "Ledus.S1G150600.t1"; gene_id "Ledus.S1G150600"
Ledus.S1	AUGUSTUS	exon	14529061	14530055	.	+	.	transcript_id "Ledus.S1G150600.t1"; gene_id "Ledus.S1G150600"
Ledus.S1	AUGUSTUS	stop_codon	14530056	14530058	.	+	0	transcript_id "Ledus.S1G150600.t1"; gene_id "Ledus.S1G150600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3653.t1 is derived from g1089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10427501	10428233	.	-	.	Ledus.S1G107400
Ledus.S1	AUGUSTUS	transcript	10427501	10428233	.	-	.	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	stop_codon	10427498	10427500	.	-	0	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	CDS	10427501	10427512	0.43	-	0	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	exon	10427501	10427512	.	-	.	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	intron	10427513	10427602	.	-	.	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	CDS	10427603	10427732	0.43	-	1	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	exon	10427603	10427732	.	-	.	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	intron	10427733	10427890	.	-	.	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	CDS	10427891	10428003	0.55	-	0	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	exon	10427891	10428003	.	-	.	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	intron	10428004	10428230	.	-	.	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	CDS	10428231	10428233	0.55	-	0	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	exon	10428231	10428233	.	-	.	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
Ledus.S1	AUGUSTUS	start_codon	10428231	10428233	.	-	0	transcript_id "Ledus.S1G107400.t1"; gene_id "Ledus.S1G107400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3182.t1 is derived from g617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6618149	6620110	.	-	.	Ledus.S1G060300
Ledus.S1	AUGUSTUS	transcript	6618149	6620110	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	stop_codon	6618146	6618148	.	-	0	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	CDS	6618149	6618166	0.51	-	0	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	exon	6618149	6618166	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	intron	6618167	6618237	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	CDS	6618238	6618291	1	-	0	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	exon	6618238	6618291	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	intron	6618292	6618375	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	CDS	6618376	6618476	1	-	2	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	exon	6618376	6618476	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	intron	6618477	6618571	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	CDS	6618572	6618615	0.96	-	1	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	exon	6618572	6618615	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	intron	6618616	6618725	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	CDS	6618726	6618796	0.96	-	0	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	exon	6618726	6618796	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	intron	6618797	6618887	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	CDS	6618888	6618956	1	-	0	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	exon	6618888	6618956	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	intron	6618957	6619124	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	CDS	6619125	6619181	1	-	0	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	exon	6619125	6619181	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	intron	6619182	6619263	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	CDS	6619264	6619322	0.98	-	2	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	exon	6619264	6619322	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	intron	6619323	6619434	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	CDS	6619435	6619491	0.86	-	2	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	exon	6619435	6619491	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	intron	6619492	6619641	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	CDS	6619642	6619775	0.99	-	1	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	exon	6619642	6619775	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	intron	6619776	6619879	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	CDS	6619880	6620012	1	-	2	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	exon	6619880	6620012	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	intron	6620013	6620103	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	CDS	6620104	6620110	0.79	-	0	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	exon	6620104	6620110	.	-	.	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
Ledus.S1	AUGUSTUS	start_codon	6620108	6620110	.	-	0	transcript_id "Ledus.S1G060300.t1"; gene_id "Ledus.S1G060300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1315.t1 is derived from g8176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9221455	9221667	.	+	.	Ledus.S2G119700
Ledus.S2	AUGUSTUS	transcript	9221455	9221667	.	+	.	transcript_id "Ledus.S2G119700.t1"; gene_id "Ledus.S2G119700"
Ledus.S2	AUGUSTUS	start_codon	9221455	9221457	.	+	0	transcript_id "Ledus.S2G119700.t1"; gene_id "Ledus.S2G119700"
Ledus.S2	AUGUSTUS	CDS	9221455	9221667	0.6	+	0	transcript_id "Ledus.S2G119700.t1"; gene_id "Ledus.S2G119700"
Ledus.S2	AUGUSTUS	exon	9221455	9221667	.	+	.	transcript_id "Ledus.S2G119700.t1"; gene_id "Ledus.S2G119700"
Ledus.S2	AUGUSTUS	stop_codon	9221668	9221670	.	+	0	transcript_id "Ledus.S2G119700.t1"; gene_id "Ledus.S2G119700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9484.t1 is derived from g10514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7308260	7310128	.	+	.	Ledus.S3G096100
Ledus.S3	AUGUSTUS	transcript	7308260	7310128	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	start_codon	7308260	7308262	.	+	0	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	CDS	7308260	7308415	0.97	+	0	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	exon	7308260	7308415	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	intron	7308416	7308601	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	CDS	7308602	7308727	1	+	0	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	exon	7308602	7308727	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	intron	7308728	7308877	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	CDS	7308878	7309046	1	+	0	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	exon	7308878	7309046	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	intron	7309047	7309182	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	CDS	7309183	7309265	1	+	2	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	exon	7309183	7309265	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	intron	7309266	7309353	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	CDS	7309354	7309422	1	+	0	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	exon	7309354	7309422	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	intron	7309423	7309642	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	CDS	7309643	7309687	1	+	0	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	exon	7309643	7309687	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	intron	7309688	7309773	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	CDS	7309774	7309836	1	+	0	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	exon	7309774	7309836	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	intron	7309837	7309928	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	CDS	7309929	7310005	0.78	+	0	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	exon	7309929	7310005	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	intron	7310006	7310118	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	CDS	7310119	7310128	0.78	+	1	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	exon	7310119	7310128	.	+	.	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
Ledus.S3	AUGUSTUS	stop_codon	7310129	7310131	.	+	0	transcript_id "Ledus.S3G096100.t1"; gene_id "Ledus.S3G096100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2554.t1 is derived from g9417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18942434	18942892	.	+	.	Ledus.S2G243600
Ledus.S2	AUGUSTUS	transcript	18942434	18942892	.	+	.	transcript_id "Ledus.S2G243600.t1"; gene_id "Ledus.S2G243600"
Ledus.S2	AUGUSTUS	start_codon	18942434	18942436	.	+	0	transcript_id "Ledus.S2G243600.t1"; gene_id "Ledus.S2G243600"
Ledus.S2	AUGUSTUS	CDS	18942434	18942892	0.58	+	0	transcript_id "Ledus.S2G243600.t1"; gene_id "Ledus.S2G243600"
Ledus.S2	AUGUSTUS	exon	18942434	18942892	.	+	.	transcript_id "Ledus.S2G243600.t1"; gene_id "Ledus.S2G243600"
Ledus.S2	AUGUSTUS	stop_codon	18942893	18942895	.	+	0	transcript_id "Ledus.S2G243600.t1"; gene_id "Ledus.S2G243600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5976.t1 is derived from g3419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28122908	28124746	.	+	.	Ledus.S1G339700
Ledus.S1	AUGUSTUS	transcript	28122908	28124746	.	+	.	transcript_id "Ledus.S1G339700.t1"; gene_id "Ledus.S1G339700"
Ledus.S1	AUGUSTUS	start_codon	28122908	28122910	.	+	0	transcript_id "Ledus.S1G339700.t1"; gene_id "Ledus.S1G339700"
Ledus.S1	AUGUSTUS	CDS	28122908	28124746	0.88	+	0	transcript_id "Ledus.S1G339700.t1"; gene_id "Ledus.S1G339700"
Ledus.S1	AUGUSTUS	exon	28122908	28124746	.	+	.	transcript_id "Ledus.S1G339700.t1"; gene_id "Ledus.S1G339700"
Ledus.S1	AUGUSTUS	stop_codon	28124747	28124749	.	+	0	transcript_id "Ledus.S1G339700.t1"; gene_id "Ledus.S1G339700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg220.t1 is derived from g7081.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	960156	961309	.	+	.	Ledus.S2G010200
Ledus.S2	AUGUSTUS	transcript	960156	961309	.	+	.	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	start_codon	960156	960158	.	+	0	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	CDS	960156	960449	1	+	0	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	exon	960156	960449	.	+	.	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	intron	960450	960532	.	+	.	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	CDS	960533	960604	1	+	0	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	exon	960533	960604	.	+	.	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	intron	960605	960702	.	+	.	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	CDS	960703	960795	0.72	+	0	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	exon	960703	960795	.	+	.	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	intron	960796	960939	.	+	.	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	CDS	960940	961027	0.99	+	0	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	exon	960940	961027	.	+	.	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	intron	961028	961271	.	+	.	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	CDS	961272	961309	1	+	2	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	exon	961272	961309	.	+	.	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
Ledus.S2	AUGUSTUS	stop_codon	961310	961312	.	+	0	transcript_id "Ledus.S2G010200.t1"; gene_id "Ledus.S2G010200"
# This transcript jg9957.t2 is derived from g10987.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9957.t3 is derived from g10987.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9958.t1 is derived from g10988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11546351	11550224	.	+	.	Ledus.S3G143500
Ledus.S3	AUGUSTUS	transcript	11546351	11550224	.	+	.	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	start_codon	11546351	11546353	.	+	0	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	CDS	11546351	11546383	0.8	+	0	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	exon	11546351	11546383	.	+	.	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	intron	11546384	11546455	.	+	.	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	CDS	11546456	11546599	1	+	0	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	exon	11546456	11546599	.	+	.	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	intron	11546600	11546762	.	+	.	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	CDS	11546763	11546824	1	+	0	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	exon	11546763	11546824	.	+	.	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	intron	11546825	11546965	.	+	.	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	CDS	11546966	11547061	1	+	1	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	exon	11546966	11547061	.	+	.	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	intron	11547062	11547161	.	+	.	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	CDS	11547162	11549184	0.96	+	1	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	exon	11547162	11549184	.	+	.	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	intron	11549185	11549294	.	+	.	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	CDS	11549295	11550224	0.39	+	0	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	exon	11549295	11550224	.	+	.	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
Ledus.S3	AUGUSTUS	stop_codon	11550225	11550227	.	+	0	transcript_id "Ledus.S3G143500.t1"; gene_id "Ledus.S3G143500"
# This transcript jg2971.t2 is derived from g406.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2971.t3 is derived from g406.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2971.t4 is derived from g406.t5 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2971.t5 is derived from g406.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2972.t1 is derived from g407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5011593	5015299	.	-	.	Ledus.S1G039300
Ledus.S1	AUGUSTUS	transcript	5011593	5015299	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	stop_codon	5011590	5011592	.	-	0	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5011593	5011684	0.55	-	2	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5011593	5011684	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	intron	5011685	5011789	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5011790	5011900	0.63	-	2	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5011790	5011900	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	intron	5011901	5012014	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5012015	5012086	1	-	2	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5012015	5012086	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	intron	5012087	5012502	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5012503	5012572	1	-	0	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5012503	5012572	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	intron	5012573	5012716	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5012717	5012810	1	-	1	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5012717	5012810	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	intron	5012811	5012900	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5012901	5012977	1	-	0	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5012901	5012977	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	intron	5012978	5013154	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5013155	5013323	1	-	1	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5013155	5013323	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	intron	5013324	5013449	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5013450	5013677	1	-	1	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5013450	5013677	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	intron	5013678	5013851	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5013852	5014096	0.99	-	0	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5013852	5014096	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	intron	5014097	5014189	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5014190	5014322	1	-	1	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5014190	5014322	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	intron	5014323	5014940	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5014941	5015005	0.78	-	0	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5014941	5015005	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	intron	5015006	5015102	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5015103	5015144	0.9	-	0	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5015103	5015144	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	intron	5015145	5015233	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	CDS	5015234	5015299	0.76	-	0	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	exon	5015234	5015299	.	-	.	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
Ledus.S1	AUGUSTUS	start_codon	5015297	5015299	.	-	0	transcript_id "Ledus.S1G039300.t1"; gene_id "Ledus.S1G039300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg13030.t1 is derived from g6840.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3474262	3474994	.	-	.	Ledus.S6G009200
Ledus.S6	AUGUSTUS	transcript	3474262	3474994	.	-	.	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	stop_codon	3474259	3474261	.	-	0	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	CDS	3474262	3474437	0.7	-	2	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	exon	3474262	3474437	.	-	.	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	intron	3474438	3474520	.	-	.	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	CDS	3474521	3474564	0.52	-	1	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	exon	3474521	3474564	.	-	.	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	intron	3474565	3474654	.	-	.	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	CDS	3474655	3474815	0.39	-	0	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	exon	3474655	3474815	.	-	.	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	intron	3474816	3474961	.	-	.	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	CDS	3474962	3474994	0.5	-	0	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	exon	3474962	3474994	.	-	.	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	start_codon	3474992	3474994	.	-	0	transcript_id "Ledus.S6G009200.t1"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	transcript	3474262	3474994	.	-	.	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	stop_codon	3474259	3474261	.	-	0	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	CDS	3474262	3474422	0.8	-	2	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	exon	3474262	3474422	.	-	.	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	intron	3474423	3474520	.	-	.	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	CDS	3474521	3474564	0.51	-	1	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	exon	3474521	3474564	.	-	.	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	intron	3474565	3474654	.	-	.	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	CDS	3474655	3474815	0.26	-	0	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	exon	3474655	3474815	.	-	.	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	intron	3474816	3474961	.	-	.	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	CDS	3474962	3474994	0.47	-	0	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	exon	3474962	3474994	.	-	.	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
Ledus.S6	AUGUSTUS	start_codon	3474992	3474994	.	-	0	transcript_id "Ledus.S6G009200.t2"; gene_id "Ledus.S6G009200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3563.t1 is derived from g999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9613710	9615011	.	+	.	Ledus.S1G098400
Ledus.S1	AUGUSTUS	transcript	9613710	9615011	.	+	.	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	start_codon	9613710	9613712	.	+	0	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	CDS	9613710	9613924	0.59	+	0	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	exon	9613710	9613924	.	+	.	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	intron	9613925	9614052	.	+	.	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	CDS	9614053	9614227	1	+	1	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	exon	9614053	9614227	.	+	.	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	intron	9614228	9614470	.	+	.	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	CDS	9614471	9614540	1	+	0	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	exon	9614471	9614540	.	+	.	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	intron	9614541	9614633	.	+	.	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	CDS	9614634	9614749	0.92	+	2	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	exon	9614634	9614749	.	+	.	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	intron	9614750	9614861	.	+	.	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	CDS	9614862	9615011	0.98	+	0	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	exon	9614862	9615011	.	+	.	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
Ledus.S1	AUGUSTUS	stop_codon	9615012	9615014	.	+	0	transcript_id "Ledus.S1G098400.t1"; gene_id "Ledus.S1G098400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7708.t1 is derived from g12379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5326162	5331082	.	-	.	Ledus.S5G048600
Ledus.S5	AUGUSTUS	transcript	5326162	5331082	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	stop_codon	5326159	5326161	.	-	0	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	CDS	5326162	5326505	1	-	2	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	exon	5326162	5326505	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	intron	5326506	5326591	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	CDS	5326592	5326762	1	-	2	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	exon	5326592	5326762	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	intron	5326763	5326842	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	CDS	5326843	5327450	1	-	1	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	exon	5326843	5327450	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	intron	5327451	5327540	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	CDS	5327541	5328026	0.98	-	1	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	exon	5327541	5328026	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	intron	5328027	5328255	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	CDS	5328256	5328506	0.56	-	0	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	exon	5328256	5328506	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	intron	5328507	5328898	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	CDS	5328899	5328984	0.81	-	2	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	exon	5328899	5328984	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	intron	5328985	5329304	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	CDS	5329305	5330474	0.99	-	2	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	exon	5329305	5330474	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	intron	5330475	5330618	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	CDS	5330619	5330778	1	-	0	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	exon	5330619	5330778	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	intron	5330779	5330974	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	CDS	5330975	5331082	0.96	-	0	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	exon	5330975	5331082	.	-	.	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
Ledus.S5	AUGUSTUS	start_codon	5331080	5331082	.	-	0	transcript_id "Ledus.S5G048600.t1"; gene_id "Ledus.S5G048600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7916.t1 is derived from g12587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7824910	7829064	.	+	.	Ledus.S5G069400
Ledus.S5	AUGUSTUS	transcript	7824910	7829064	.	+	.	transcript_id "Ledus.S5G069400.t1"; gene_id "Ledus.S5G069400"
Ledus.S5	AUGUSTUS	start_codon	7824910	7824912	.	+	0	transcript_id "Ledus.S5G069400.t1"; gene_id "Ledus.S5G069400"
Ledus.S5	AUGUSTUS	CDS	7824910	7829064	0.48	+	0	transcript_id "Ledus.S5G069400.t1"; gene_id "Ledus.S5G069400"
Ledus.S5	AUGUSTUS	exon	7824910	7829064	.	+	.	transcript_id "Ledus.S5G069400.t1"; gene_id "Ledus.S5G069400"
Ledus.S5	AUGUSTUS	stop_codon	7829065	7829067	.	+	0	transcript_id "Ledus.S5G069400.t1"; gene_id "Ledus.S5G069400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2867.t1 is derived from g301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4275848	4276072	.	-	.	Ledus.S1G028800
Ledus.S1	AUGUSTUS	transcript	4275848	4276072	.	-	.	transcript_id "Ledus.S1G028800.t1"; gene_id "Ledus.S1G028800"
Ledus.S1	AUGUSTUS	stop_codon	4275845	4275847	.	-	0	transcript_id "Ledus.S1G028800.t1"; gene_id "Ledus.S1G028800"
Ledus.S1	AUGUSTUS	CDS	4275848	4276072	0.48	-	0	transcript_id "Ledus.S1G028800.t1"; gene_id "Ledus.S1G028800"
Ledus.S1	AUGUSTUS	exon	4275848	4276072	.	-	.	transcript_id "Ledus.S1G028800.t1"; gene_id "Ledus.S1G028800"
Ledus.S1	AUGUSTUS	start_codon	4276070	4276072	.	-	0	transcript_id "Ledus.S1G028800.t1"; gene_id "Ledus.S1G028800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10775.t1 is derived from g11807.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17584212	17588541	.	-	.	Ledus.S3G225200
Ledus.S3	AUGUSTUS	transcript	17584212	17588541	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	stop_codon	17584209	17584211	.	-	0	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17584212	17584265	0.62	-	0	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17584212	17584265	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17584266	17584419	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17584420	17584437	0.6	-	0	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17584420	17584437	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17584438	17584615	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17584616	17584717	0.98	-	0	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17584616	17584717	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17584718	17584810	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17584811	17584943	1	-	1	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17584811	17584943	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17584944	17585021	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17585022	17585127	0.99	-	2	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17585022	17585127	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17585128	17585251	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17585252	17585322	1	-	1	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17585252	17585322	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17585323	17585419	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17585420	17585636	1	-	2	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17585420	17585636	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17585637	17585810	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17585811	17585951	0.61	-	2	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17585811	17585951	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17585952	17586100	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17586101	17586191	0.98	-	0	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17586101	17586191	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17586192	17586282	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17586283	17586345	1	-	0	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17586283	17586345	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17586346	17586428	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17586429	17586572	1	-	0	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17586429	17586572	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17586573	17586658	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17586659	17586769	1	-	0	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17586659	17586769	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17586770	17586859	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17586860	17586933	1	-	2	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17586860	17586933	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17586934	17587030	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17587031	17587356	0.74	-	1	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17587031	17587356	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17587357	17587549	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17587550	17587646	0.21	-	2	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17587550	17587646	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17587647	17588170	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17588171	17588243	0.74	-	0	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17588171	17588243	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	intron	17588244	17588391	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	CDS	17588392	17588541	0.93	-	0	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	exon	17588392	17588541	.	-	.	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
Ledus.S3	AUGUSTUS	start_codon	17588539	17588541	.	-	0	transcript_id "Ledus.S3G225200.t1"; gene_id "Ledus.S3G225200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9503.t1 is derived from g10533.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7496202	7497782	.	+	.	Ledus.S3G098000
Ledus.S3	AUGUSTUS	transcript	7496202	7497782	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	start_codon	7496202	7496204	.	+	0	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	CDS	7496202	7496250	0.99	+	0	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	exon	7496202	7496250	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	intron	7496251	7496344	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	CDS	7496345	7496439	1	+	2	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	exon	7496345	7496439	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	intron	7496440	7496520	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	CDS	7496521	7496583	1	+	0	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	exon	7496521	7496583	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	intron	7496584	7496675	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	CDS	7496676	7496900	1	+	0	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	exon	7496676	7496900	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	intron	7496901	7496991	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	CDS	7496992	7497069	1	+	0	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	exon	7496992	7497069	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	intron	7497070	7497209	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	CDS	7497210	7497230	0.93	+	0	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	exon	7497210	7497230	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	intron	7497231	7497329	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	CDS	7497330	7497782	0.83	+	0	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	exon	7497330	7497782	.	+	.	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
Ledus.S3	AUGUSTUS	stop_codon	7497783	7497785	.	+	0	transcript_id "Ledus.S3G098000.t1"; gene_id "Ledus.S3G098000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4968.t1 is derived from g2406.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20921446	20922080	.	+	.	Ledus.S1G238900
Ledus.S1	AUGUSTUS	transcript	20921446	20922080	.	+	.	transcript_id "Ledus.S1G238900.t1"; gene_id "Ledus.S1G238900"
Ledus.S1	AUGUSTUS	start_codon	20921446	20921448	.	+	0	transcript_id "Ledus.S1G238900.t1"; gene_id "Ledus.S1G238900"
Ledus.S1	AUGUSTUS	CDS	20921446	20921656	0.59	+	0	transcript_id "Ledus.S1G238900.t1"; gene_id "Ledus.S1G238900"
Ledus.S1	AUGUSTUS	exon	20921446	20921656	.	+	.	transcript_id "Ledus.S1G238900.t1"; gene_id "Ledus.S1G238900"
Ledus.S1	AUGUSTUS	intron	20921657	20921877	.	+	.	transcript_id "Ledus.S1G238900.t1"; gene_id "Ledus.S1G238900"
Ledus.S1	AUGUSTUS	CDS	20921878	20922080	0.54	+	2	transcript_id "Ledus.S1G238900.t1"; gene_id "Ledus.S1G238900"
Ledus.S1	AUGUSTUS	exon	20921878	20922080	.	+	.	transcript_id "Ledus.S1G238900.t1"; gene_id "Ledus.S1G238900"
Ledus.S1	AUGUSTUS	stop_codon	20922081	20922083	.	+	0	transcript_id "Ledus.S1G238900.t1"; gene_id "Ledus.S1G238900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6578.t1 is derived from g4021.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32468224	32472836	.	-	.	Ledus.S1G399900
Ledus.S1	AUGUSTUS	transcript	32468224	32472836	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	stop_codon	32468221	32468223	.	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32468224	32468501	0.98	-	2	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32468224	32468501	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32468502	32468595	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32468596	32468674	1	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32468596	32468674	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32468675	32468754	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32468755	32468992	1	-	1	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32468755	32468992	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32468993	32469112	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32469113	32469351	0.9	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32469113	32469351	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32469352	32469459	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32469460	32469570	0.91	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32469460	32469570	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32469571	32469675	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32469676	32469774	0.87	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32469676	32469774	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32469775	32469898	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32469899	32470001	1	-	1	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32469899	32470001	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32470002	32470076	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32470077	32470186	0.98	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32470077	32470186	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32470187	32470305	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32470306	32470356	0.99	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32470306	32470356	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32470357	32470462	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32470463	32470580	1	-	1	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32470463	32470580	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32470581	32470744	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32470745	32470775	1	-	2	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32470745	32470775	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32470776	32470878	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32470879	32470985	1	-	1	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32470879	32470985	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32470986	32471056	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32471057	32471138	1	-	2	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32471057	32471138	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32471139	32471223	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32471224	32471318	1	-	1	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32471224	32471318	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32471319	32471418	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32471419	32471510	1	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32471419	32471510	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32471511	32471646	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32471647	32471768	1	-	2	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32471647	32471768	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32471769	32471848	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32471849	32472060	1	-	1	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32471849	32472060	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32472061	32472131	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32472132	32472199	0.76	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32472132	32472199	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32472200	32472310	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32472311	32472364	0.58	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32472311	32472364	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32472365	32472467	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32472468	32472521	0.5	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32472468	32472521	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	intron	32472522	32472632	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	CDS	32472633	32472836	0.53	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	exon	32472633	32472836	.	-	.	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
Ledus.S1	AUGUSTUS	start_codon	32472834	32472836	.	-	0	transcript_id "Ledus.S1G399900.t1"; gene_id "Ledus.S1G399900"
# This transcript jg10460.t2 is derived from g11490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10461.t1 is derived from g11491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15381976	15384688	.	-	.	Ledus.S3G193800
Ledus.S3	AUGUSTUS	transcript	15381976	15384688	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	stop_codon	15381973	15381975	.	-	0	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15381976	15382083	1	-	0	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15381976	15382083	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	intron	15382084	15382166	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15382167	15382307	1	-	0	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15382167	15382307	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	intron	15382308	15382380	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15382381	15382571	1	-	2	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15382381	15382571	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	intron	15382572	15382644	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15382645	15382822	1	-	0	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15382645	15382822	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	intron	15382823	15382907	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15382908	15383046	1	-	1	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15382908	15383046	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	intron	15383047	15383112	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15383113	15383175	1	-	1	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15383113	15383175	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	intron	15383176	15383251	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15383252	15383333	0.94	-	2	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15383252	15383333	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	intron	15383334	15383427	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15383428	15383506	0.85	-	0	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15383428	15383506	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	intron	15383507	15383628	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15383629	15383742	0.55	-	0	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15383629	15383742	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	intron	15383743	15383830	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15383831	15384075	1	-	2	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15383831	15384075	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	intron	15384076	15384148	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15384149	15384251	1	-	0	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15384149	15384251	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	intron	15384252	15384331	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15384332	15384520	1	-	0	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15384332	15384520	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	intron	15384521	15384604	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	CDS	15384605	15384688	0.99	-	0	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	exon	15384605	15384688	.	-	.	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
Ledus.S3	AUGUSTUS	start_codon	15384686	15384688	.	-	0	transcript_id "Ledus.S3G193800.t1"; gene_id "Ledus.S3G193800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9873.t1 is derived from g10903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10785788	10789815	.	+	.	Ledus.S3G135000
Ledus.S3	AUGUSTUS	transcript	10785788	10789815	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	start_codon	10785788	10785790	.	+	0	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	CDS	10785788	10786084	0.79	+	0	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	exon	10785788	10786084	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	intron	10786085	10786252	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	CDS	10786253	10788058	1	+	0	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	exon	10786253	10788058	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	intron	10788059	10788308	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	CDS	10788309	10788430	1	+	0	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	exon	10788309	10788430	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	intron	10788431	10788586	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	CDS	10788587	10788728	1	+	1	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	exon	10788587	10788728	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	intron	10788729	10788891	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	CDS	10788892	10789116	1	+	0	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	exon	10788892	10789116	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	intron	10789117	10789202	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	CDS	10789203	10789277	1	+	0	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	exon	10789203	10789277	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	intron	10789278	10789413	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	CDS	10789414	10789515	1	+	0	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	exon	10789414	10789515	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	intron	10789516	10789602	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	CDS	10789603	10789815	0.97	+	0	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	exon	10789603	10789815	.	+	.	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
Ledus.S3	AUGUSTUS	stop_codon	10789816	10789818	.	+	0	transcript_id "Ledus.S3G135000.t1"; gene_id "Ledus.S3G135000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8700.t1 is derived from g9730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1476426	1477646	.	-	.	Ledus.S3G017700
Ledus.S3	AUGUSTUS	transcript	1476426	1477646	.	-	.	transcript_id "Ledus.S3G017700.t1"; gene_id "Ledus.S3G017700"
Ledus.S3	AUGUSTUS	stop_codon	1476423	1476425	.	-	0	transcript_id "Ledus.S3G017700.t1"; gene_id "Ledus.S3G017700"
Ledus.S3	AUGUSTUS	CDS	1476426	1476821	0.88	-	0	transcript_id "Ledus.S3G017700.t1"; gene_id "Ledus.S3G017700"
Ledus.S3	AUGUSTUS	exon	1476426	1476821	.	-	.	transcript_id "Ledus.S3G017700.t1"; gene_id "Ledus.S3G017700"
Ledus.S3	AUGUSTUS	intron	1476822	1476929	.	-	.	transcript_id "Ledus.S3G017700.t1"; gene_id "Ledus.S3G017700"
Ledus.S3	AUGUSTUS	CDS	1476930	1477646	0.56	-	0	transcript_id "Ledus.S3G017700.t1"; gene_id "Ledus.S3G017700"
Ledus.S3	AUGUSTUS	exon	1476930	1477646	.	-	.	transcript_id "Ledus.S3G017700.t1"; gene_id "Ledus.S3G017700"
Ledus.S3	AUGUSTUS	start_codon	1477644	1477646	.	-	0	transcript_id "Ledus.S3G017700.t1"; gene_id "Ledus.S3G017700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5097.t1 is derived from g2536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21578256	21578854	.	-	.	Ledus.S1G251800
Ledus.S1	AUGUSTUS	transcript	21578256	21578854	.	-	.	transcript_id "Ledus.S1G251800.t1"; gene_id "Ledus.S1G251800"
Ledus.S1	AUGUSTUS	stop_codon	21578253	21578255	.	-	0	transcript_id "Ledus.S1G251800.t1"; gene_id "Ledus.S1G251800"
Ledus.S1	AUGUSTUS	CDS	21578256	21578322	0.39	-	1	transcript_id "Ledus.S1G251800.t1"; gene_id "Ledus.S1G251800"
Ledus.S1	AUGUSTUS	exon	21578256	21578322	.	-	.	transcript_id "Ledus.S1G251800.t1"; gene_id "Ledus.S1G251800"
Ledus.S1	AUGUSTUS	intron	21578323	21578390	.	-	.	transcript_id "Ledus.S1G251800.t1"; gene_id "Ledus.S1G251800"
Ledus.S1	AUGUSTUS	CDS	21578391	21578854	0.31	-	0	transcript_id "Ledus.S1G251800.t1"; gene_id "Ledus.S1G251800"
Ledus.S1	AUGUSTUS	exon	21578391	21578854	.	-	.	transcript_id "Ledus.S1G251800.t1"; gene_id "Ledus.S1G251800"
Ledus.S1	AUGUSTUS	start_codon	21578852	21578854	.	-	0	transcript_id "Ledus.S1G251800.t1"; gene_id "Ledus.S1G251800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1216.t1 is derived from g8077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8655000	8656601	.	+	.	Ledus.S2G109800
Ledus.S2	AUGUSTUS	transcript	8655000	8656601	.	+	.	transcript_id "Ledus.S2G109800.t1"; gene_id "Ledus.S2G109800"
Ledus.S2	AUGUSTUS	start_codon	8655000	8655002	.	+	0	transcript_id "Ledus.S2G109800.t1"; gene_id "Ledus.S2G109800"
Ledus.S2	AUGUSTUS	CDS	8655000	8656601	0.91	+	0	transcript_id "Ledus.S2G109800.t1"; gene_id "Ledus.S2G109800"
Ledus.S2	AUGUSTUS	exon	8655000	8656601	.	+	.	transcript_id "Ledus.S2G109800.t1"; gene_id "Ledus.S2G109800"
Ledus.S2	AUGUSTUS	stop_codon	8656602	8656604	.	+	0	transcript_id "Ledus.S2G109800.t1"; gene_id "Ledus.S2G109800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6089.t1 is derived from g3532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28870805	28871770	.	-	.	Ledus.S1G351000
Ledus.S1	AUGUSTUS	transcript	28870805	28871770	.	-	.	transcript_id "Ledus.S1G351000.t1"; gene_id "Ledus.S1G351000"
Ledus.S1	AUGUSTUS	stop_codon	28870802	28870804	.	-	0	transcript_id "Ledus.S1G351000.t1"; gene_id "Ledus.S1G351000"
Ledus.S1	AUGUSTUS	CDS	28870805	28871770	0.97	-	0	transcript_id "Ledus.S1G351000.t1"; gene_id "Ledus.S1G351000"
Ledus.S1	AUGUSTUS	exon	28870805	28871770	.	-	.	transcript_id "Ledus.S1G351000.t1"; gene_id "Ledus.S1G351000"
Ledus.S1	AUGUSTUS	start_codon	28871768	28871770	.	-	0	transcript_id "Ledus.S1G351000.t1"; gene_id "Ledus.S1G351000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7675.t1 is derived from g12346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5129613	5131341	.	-	.	Ledus.S5G045300
Ledus.S5	AUGUSTUS	transcript	5129613	5131341	.	-	.	transcript_id "Ledus.S5G045300.t1"; gene_id "Ledus.S5G045300"
Ledus.S5	AUGUSTUS	stop_codon	5129610	5129612	.	-	0	transcript_id "Ledus.S5G045300.t1"; gene_id "Ledus.S5G045300"
Ledus.S5	AUGUSTUS	CDS	5129613	5130856	0.95	-	2	transcript_id "Ledus.S5G045300.t1"; gene_id "Ledus.S5G045300"
Ledus.S5	AUGUSTUS	exon	5129613	5130856	.	-	.	transcript_id "Ledus.S5G045300.t1"; gene_id "Ledus.S5G045300"
Ledus.S5	AUGUSTUS	intron	5130857	5131082	.	-	.	transcript_id "Ledus.S5G045300.t1"; gene_id "Ledus.S5G045300"
Ledus.S5	AUGUSTUS	CDS	5131083	5131341	0.68	-	0	transcript_id "Ledus.S5G045300.t1"; gene_id "Ledus.S5G045300"
Ledus.S5	AUGUSTUS	exon	5131083	5131341	.	-	.	transcript_id "Ledus.S5G045300.t1"; gene_id "Ledus.S5G045300"
Ledus.S5	AUGUSTUS	start_codon	5131339	5131341	.	-	0	transcript_id "Ledus.S5G045300.t1"; gene_id "Ledus.S5G045300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7025.t1 is derived from g6556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	877074	877394	.	+	.	Ledus.C7G008600
Ledus.C7	AUGUSTUS	transcript	877074	877394	.	+	.	transcript_id "Ledus.C7G008600.t1"; gene_id "Ledus.C7G008600"
Ledus.C7	AUGUSTUS	start_codon	877074	877076	.	+	0	transcript_id "Ledus.C7G008600.t1"; gene_id "Ledus.C7G008600"
Ledus.C7	AUGUSTUS	CDS	877074	877394	0.5	+	0	transcript_id "Ledus.C7G008600.t1"; gene_id "Ledus.C7G008600"
Ledus.C7	AUGUSTUS	exon	877074	877394	.	+	.	transcript_id "Ledus.C7G008600.t1"; gene_id "Ledus.C7G008600"
Ledus.C7	AUGUSTUS	stop_codon	877395	877397	.	+	0	transcript_id "Ledus.C7G008600.t1"; gene_id "Ledus.C7G008600"
# This transcript jg10331.t2 is derived from g11361.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10332.t1 is derived from g11362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14275198	14279945	.	-	.	Ledus.S3G180900
Ledus.S3	AUGUSTUS	transcript	14275198	14279945	.	-	.	transcript_id "Ledus.S3G180900.t1"; gene_id "Ledus.S3G180900"
Ledus.S3	AUGUSTUS	stop_codon	14275195	14275197	.	-	0	transcript_id "Ledus.S3G180900.t1"; gene_id "Ledus.S3G180900"
Ledus.S3	AUGUSTUS	CDS	14275198	14275394	0.68	-	2	transcript_id "Ledus.S3G180900.t1"; gene_id "Ledus.S3G180900"
Ledus.S3	AUGUSTUS	exon	14275198	14275394	.	-	.	transcript_id "Ledus.S3G180900.t1"; gene_id "Ledus.S3G180900"
Ledus.S3	AUGUSTUS	intron	14275395	14275547	.	-	.	transcript_id "Ledus.S3G180900.t1"; gene_id "Ledus.S3G180900"
Ledus.S3	AUGUSTUS	CDS	14275548	14275645	0.33	-	1	transcript_id "Ledus.S3G180900.t1"; gene_id "Ledus.S3G180900"
Ledus.S3	AUGUSTUS	exon	14275548	14275645	.	-	.	transcript_id "Ledus.S3G180900.t1"; gene_id "Ledus.S3G180900"
Ledus.S3	AUGUSTUS	intron	14275646	14275803	.	-	.	transcript_id "Ledus.S3G180900.t1"; gene_id "Ledus.S3G180900"
Ledus.S3	AUGUSTUS	CDS	14275804	14279945	0.79	-	0	transcript_id "Ledus.S3G180900.t1"; gene_id "Ledus.S3G180900"
Ledus.S3	AUGUSTUS	exon	14275804	14279945	.	-	.	transcript_id "Ledus.S3G180900.t1"; gene_id "Ledus.S3G180900"
Ledus.S3	AUGUSTUS	start_codon	14279943	14279945	.	-	0	transcript_id "Ledus.S3G180900.t1"; gene_id "Ledus.S3G180900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4373.t1 is derived from g1809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16685917	16689044	.	-	.	Ledus.S1G179400
Ledus.S1	AUGUSTUS	transcript	16685917	16689044	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	stop_codon	16685914	16685916	.	-	0	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16685917	16685960	1	-	2	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16685917	16685960	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16685961	16686049	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16686050	16686128	0.98	-	0	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16686050	16686128	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16686129	16686241	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16686242	16686437	1	-	1	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16686242	16686437	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16686438	16686607	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16686608	16686791	1	-	2	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16686608	16686791	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16686792	16687025	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16687026	16687133	1	-	2	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16687026	16687133	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16687134	16687315	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16687316	16687477	1	-	2	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16687316	16687477	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16687478	16687654	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16687655	16687807	1	-	2	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16687655	16687807	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16687808	16687986	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16687987	16688139	0.63	-	2	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16687987	16688139	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16688140	16688255	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16688256	16688423	1	-	2	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16688256	16688423	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16688424	16688601	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16688602	16688751	1	-	2	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16688602	16688751	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16688752	16688836	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16688837	16689044	1	-	0	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16688837	16689044	.	-	.	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	start_codon	16689042	16689044	.	-	0	transcript_id "Ledus.S1G179400.t1"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	transcript	16685917	16689044	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	stop_codon	16685914	16685916	.	-	0	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16685917	16685960	1	-	2	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16685917	16685960	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16685961	16686049	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16686050	16686128	0.98	-	0	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16686050	16686128	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16686129	16686241	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16686242	16686437	1	-	1	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16686242	16686437	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16686438	16686607	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16686608	16686791	1	-	2	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16686608	16686791	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16686792	16686950	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16686951	16687133	1	-	2	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16686951	16687133	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16687134	16687315	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16687316	16687477	1	-	2	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16687316	16687477	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16687478	16687654	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16687655	16687807	1	-	2	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16687655	16687807	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16687808	16687986	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16687987	16688139	0.62	-	2	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16687987	16688139	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16688140	16688255	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16688256	16688423	1	-	2	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16688256	16688423	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16688424	16688601	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16688602	16688751	1	-	2	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16688602	16688751	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16688752	16688836	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16688837	16689044	1	-	0	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16688837	16689044	.	-	.	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	start_codon	16689042	16689044	.	-	0	transcript_id "Ledus.S1G179400.t2"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	transcript	16685917	16689044	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	stop_codon	16685914	16685916	.	-	0	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16685917	16685960	1	-	2	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16685917	16685960	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16685961	16686049	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16686050	16686128	1	-	0	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16686050	16686128	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16686129	16686241	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16686242	16686437	1	-	1	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16686242	16686437	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16686438	16686607	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16686608	16686791	1	-	2	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16686608	16686791	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16686792	16686950	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16686951	16687136	1	-	2	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16686951	16687136	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16687137	16687315	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16687316	16687477	1	-	2	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16687316	16687477	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16687478	16687654	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16687655	16687807	1	-	2	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16687655	16687807	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16687808	16687986	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16687987	16688139	0.57	-	2	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16687987	16688139	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16688140	16688255	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16688256	16688423	1	-	2	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16688256	16688423	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16688424	16688601	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16688602	16688751	1	-	2	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16688602	16688751	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	intron	16688752	16688836	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	CDS	16688837	16689044	0.99	-	0	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	exon	16688837	16689044	.	-	.	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
Ledus.S1	AUGUSTUS	start_codon	16689042	16689044	.	-	0	transcript_id "Ledus.S1G179400.t3"; gene_id "Ledus.S1G179400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5102.t1 is derived from g2541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21683575	21683817	.	-	.	Ledus.S1G252300
Ledus.S1	AUGUSTUS	transcript	21683575	21683817	.	-	.	transcript_id "Ledus.S1G252300.t1"; gene_id "Ledus.S1G252300"
Ledus.S1	AUGUSTUS	stop_codon	21683572	21683574	.	-	0	transcript_id "Ledus.S1G252300.t1"; gene_id "Ledus.S1G252300"
Ledus.S1	AUGUSTUS	CDS	21683575	21683817	0.98	-	0	transcript_id "Ledus.S1G252300.t1"; gene_id "Ledus.S1G252300"
Ledus.S1	AUGUSTUS	exon	21683575	21683817	.	-	.	transcript_id "Ledus.S1G252300.t1"; gene_id "Ledus.S1G252300"
Ledus.S1	AUGUSTUS	start_codon	21683815	21683817	.	-	0	transcript_id "Ledus.S1G252300.t1"; gene_id "Ledus.S1G252300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1348.t1 is derived from g8209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9380500	9380736	.	+	.	Ledus.S2G123000
Ledus.S2	AUGUSTUS	transcript	9380500	9380736	.	+	.	transcript_id "Ledus.S2G123000.t1"; gene_id "Ledus.S2G123000"
Ledus.S2	AUGUSTUS	start_codon	9380500	9380502	.	+	0	transcript_id "Ledus.S2G123000.t1"; gene_id "Ledus.S2G123000"
Ledus.S2	AUGUSTUS	CDS	9380500	9380736	0.66	+	0	transcript_id "Ledus.S2G123000.t1"; gene_id "Ledus.S2G123000"
Ledus.S2	AUGUSTUS	exon	9380500	9380736	.	+	.	transcript_id "Ledus.S2G123000.t1"; gene_id "Ledus.S2G123000"
Ledus.S2	AUGUSTUS	stop_codon	9380737	9380739	.	+	0	transcript_id "Ledus.S2G123000.t1"; gene_id "Ledus.S2G123000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8572.t1 is derived from g9602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	228950	230768	.	+	.	Ledus.S3G004900
Ledus.S3	AUGUSTUS	transcript	228950	230768	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	start_codon	228950	228952	.	+	0	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	CDS	228950	229176	0.28	+	0	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	exon	228950	229176	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	intron	229177	229261	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	CDS	229262	229375	1	+	1	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	exon	229262	229375	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	intron	229376	229456	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	CDS	229457	229552	1	+	1	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	exon	229457	229552	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	intron	229553	229640	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	CDS	229641	229683	1	+	1	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	exon	229641	229683	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	intron	229684	229800	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	CDS	229801	229956	1	+	0	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	exon	229801	229956	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	intron	229957	230120	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	CDS	230121	230201	1	+	0	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	exon	230121	230201	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	intron	230202	230300	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	CDS	230301	230411	1	+	0	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	exon	230301	230411	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	intron	230412	230600	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	CDS	230601	230768	1	+	0	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	exon	230601	230768	.	+	.	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
Ledus.S3	AUGUSTUS	stop_codon	230769	230771	.	+	0	transcript_id "Ledus.S3G004900.t1"; gene_id "Ledus.S3G004900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1735.t1 is derived from g8597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12226045	12226647	.	+	.	Ledus.S2G161700
Ledus.S2	AUGUSTUS	transcript	12226045	12226647	.	+	.	transcript_id "Ledus.S2G161700.t1"; gene_id "Ledus.S2G161700"
Ledus.S2	AUGUSTUS	start_codon	12226045	12226047	.	+	0	transcript_id "Ledus.S2G161700.t1"; gene_id "Ledus.S2G161700"
Ledus.S2	AUGUSTUS	CDS	12226045	12226263	0.39	+	0	transcript_id "Ledus.S2G161700.t1"; gene_id "Ledus.S2G161700"
Ledus.S2	AUGUSTUS	exon	12226045	12226263	.	+	.	transcript_id "Ledus.S2G161700.t1"; gene_id "Ledus.S2G161700"
Ledus.S2	AUGUSTUS	intron	12226264	12226428	.	+	.	transcript_id "Ledus.S2G161700.t1"; gene_id "Ledus.S2G161700"
Ledus.S2	AUGUSTUS	CDS	12226429	12226647	0.68	+	0	transcript_id "Ledus.S2G161700.t1"; gene_id "Ledus.S2G161700"
Ledus.S2	AUGUSTUS	exon	12226429	12226647	.	+	.	transcript_id "Ledus.S2G161700.t1"; gene_id "Ledus.S2G161700"
Ledus.S2	AUGUSTUS	stop_codon	12226648	12226650	.	+	0	transcript_id "Ledus.S2G161700.t1"; gene_id "Ledus.S2G161700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2628.t1 is derived from g61.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	828514	830061	.	+	.	Ledus.S1G004900
Ledus.S1	AUGUSTUS	transcript	828514	830061	.	+	.	transcript_id "Ledus.S1G004900.t1"; gene_id "Ledus.S1G004900"
Ledus.S1	AUGUSTUS	start_codon	828514	828516	.	+	0	transcript_id "Ledus.S1G004900.t1"; gene_id "Ledus.S1G004900"
Ledus.S1	AUGUSTUS	CDS	828514	830061	0.46	+	0	transcript_id "Ledus.S1G004900.t1"; gene_id "Ledus.S1G004900"
Ledus.S1	AUGUSTUS	exon	828514	830061	.	+	.	transcript_id "Ledus.S1G004900.t1"; gene_id "Ledus.S1G004900"
Ledus.S1	AUGUSTUS	stop_codon	830062	830064	.	+	0	transcript_id "Ledus.S1G004900.t1"; gene_id "Ledus.S1G004900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2571.t1 is derived from g9434.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19029946	19032294	.	+	.	Ledus.S2G245300
Ledus.S2	AUGUSTUS	transcript	19029946	19032294	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	start_codon	19029946	19029948	.	+	0	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	CDS	19029946	19030119	0.88	+	0	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	exon	19029946	19030119	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	intron	19030120	19030205	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	CDS	19030206	19030291	1	+	0	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	exon	19030206	19030291	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	intron	19030292	19030375	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	CDS	19030376	19030582	1	+	1	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	exon	19030376	19030582	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	intron	19030583	19030673	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	CDS	19030674	19030779	1	+	1	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	exon	19030674	19030779	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	intron	19030780	19030905	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	CDS	19030906	19031010	1	+	0	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	exon	19030906	19031010	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	intron	19031011	19031245	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	CDS	19031246	19031418	1	+	0	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	exon	19031246	19031418	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	intron	19031419	19031513	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	CDS	19031514	19031673	1	+	1	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	exon	19031514	19031673	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	intron	19031674	19031798	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	CDS	19031799	19031891	1	+	0	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	exon	19031799	19031891	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	intron	19031892	19031978	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	CDS	19031979	19032073	1	+	0	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	exon	19031979	19032073	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	intron	19032074	19032206	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	CDS	19032207	19032294	1	+	1	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	exon	19032207	19032294	.	+	.	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
Ledus.S2	AUGUSTUS	stop_codon	19032295	19032297	.	+	0	transcript_id "Ledus.S2G245300.t1"; gene_id "Ledus.S2G245300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1206.t1 is derived from g8067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8598098	8601340	.	-	.	Ledus.S2G108800
Ledus.S2	AUGUSTUS	transcript	8598098	8601340	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	stop_codon	8598095	8598097	.	-	0	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	CDS	8598098	8598292	1	-	0	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	exon	8598098	8598292	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	intron	8598293	8598394	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	CDS	8598395	8598622	0.99	-	0	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	exon	8598395	8598622	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	intron	8598623	8598711	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	CDS	8598712	8598969	0.99	-	0	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	exon	8598712	8598969	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	intron	8598970	8599104	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	CDS	8599105	8599461	1	-	0	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	exon	8599105	8599461	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	intron	8599462	8599556	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	CDS	8599557	8599670	1	-	0	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	exon	8599557	8599670	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	intron	8599671	8599786	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	CDS	8599787	8599869	1	-	2	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	exon	8599787	8599869	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	intron	8599870	8600064	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	CDS	8600065	8600248	1	-	0	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	exon	8600065	8600248	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	intron	8600249	8600423	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	CDS	8600424	8600569	1	-	2	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	exon	8600424	8600569	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	intron	8600570	8600665	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	CDS	8600666	8601027	0.64	-	1	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	exon	8600666	8601027	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	intron	8601028	8601125	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	CDS	8601126	8601340	0.99	-	0	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	exon	8601126	8601340	.	-	.	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
Ledus.S2	AUGUSTUS	start_codon	8601338	8601340	.	-	0	transcript_id "Ledus.S2G108800.t1"; gene_id "Ledus.S2G108800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11184.t1 is derived from g4802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2492749	2495222	.	+	.	Ledus.S4G034000
Ledus.S4	AUGUSTUS	transcript	2492749	2495222	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	start_codon	2492749	2492751	.	+	0	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	CDS	2492749	2492756	0.63	+	0	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	exon	2492749	2492756	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	intron	2492757	2492837	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	CDS	2492838	2492892	0.63	+	1	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	exon	2492838	2492892	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	intron	2492893	2493018	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	CDS	2493019	2493138	1	+	0	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	exon	2493019	2493138	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	intron	2493139	2493269	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	CDS	2493270	2493436	1	+	0	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	exon	2493270	2493436	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	intron	2493437	2493588	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	CDS	2493589	2493750	1	+	1	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	exon	2493589	2493750	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	intron	2493751	2493955	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	CDS	2493956	2494044	1	+	1	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	exon	2493956	2494044	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	intron	2494045	2494143	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	CDS	2494144	2494262	1	+	2	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	exon	2494144	2494262	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	intron	2494263	2494390	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	CDS	2494391	2494487	1	+	0	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	exon	2494391	2494487	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	intron	2494488	2494623	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	CDS	2494624	2494754	0.33	+	2	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	exon	2494624	2494754	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	intron	2494755	2494863	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	CDS	2494864	2495037	0.95	+	0	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	exon	2494864	2495037	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	intron	2495038	2495144	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	CDS	2495145	2495222	0.62	+	0	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	exon	2495145	2495222	.	+	.	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
Ledus.S4	AUGUSTUS	stop_codon	2495223	2495225	.	+	0	transcript_id "Ledus.S4G034000.t1"; gene_id "Ledus.S4G034000"
# This transcript jg6403.t2 is derived from g3846.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6404.t1 is derived from g3847.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31068020	31070912	.	+	.	Ledus.S1G382500
Ledus.S1	AUGUSTUS	transcript	31068020	31070912	.	+	.	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	start_codon	31068020	31068022	.	+	0	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	CDS	31068020	31068366	0.75	+	0	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	exon	31068020	31068366	.	+	.	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	intron	31068367	31068457	.	+	.	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	CDS	31068458	31068691	1	+	1	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	exon	31068458	31068691	.	+	.	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	intron	31068692	31068766	.	+	.	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	CDS	31068767	31069936	1	+	1	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	exon	31068767	31069936	.	+	.	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	intron	31069937	31070215	.	+	.	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	CDS	31070216	31070912	0.96	+	1	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	exon	31070216	31070912	.	+	.	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	stop_codon	31070913	31070915	.	+	0	transcript_id "Ledus.S1G382500.t1"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	transcript	31068020	31070912	.	+	.	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	start_codon	31068020	31068022	.	+	0	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	CDS	31068020	31068366	0.79	+	0	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	exon	31068020	31068366	.	+	.	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	intron	31068367	31068457	.	+	.	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	CDS	31068458	31068691	1	+	1	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	exon	31068458	31068691	.	+	.	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	intron	31068692	31068769	.	+	.	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	CDS	31068770	31069936	0.99	+	1	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	exon	31068770	31069936	.	+	.	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	intron	31069937	31070215	.	+	.	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	CDS	31070216	31070912	0.93	+	1	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	exon	31070216	31070912	.	+	.	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
Ledus.S1	AUGUSTUS	stop_codon	31070913	31070915	.	+	0	transcript_id "Ledus.S1G382500.t2"; gene_id "Ledus.S1G382500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11142.t1 is derived from g4760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2137410	2138701	.	-	.	Ledus.S4G029800
Ledus.S4	AUGUSTUS	transcript	2137410	2138701	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	stop_codon	2137407	2137409	.	-	0	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	CDS	2137410	2137469	0.98	-	0	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	exon	2137410	2137469	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	intron	2137470	2137550	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	CDS	2137551	2137618	1	-	2	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	exon	2137551	2137618	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	intron	2137619	2137705	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	CDS	2137706	2137808	1	-	0	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	exon	2137706	2137808	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	intron	2137809	2137977	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	CDS	2137978	2138208	1	-	0	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	exon	2137978	2138208	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	intron	2138209	2138319	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	CDS	2138320	2138360	1	-	2	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	exon	2138320	2138360	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	intron	2138361	2138485	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	CDS	2138486	2138522	1	-	0	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	exon	2138486	2138522	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	intron	2138523	2138698	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	CDS	2138699	2138701	0.84	-	0	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	exon	2138699	2138701	.	-	.	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
Ledus.S4	AUGUSTUS	start_codon	2138699	2138701	.	-	0	transcript_id "Ledus.S4G029800.t1"; gene_id "Ledus.S4G029800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4004.t1 is derived from g1440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14040325	14041487	.	+	.	Ledus.S1G142500
Ledus.S1	AUGUSTUS	transcript	14040325	14041487	.	+	.	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	start_codon	14040325	14040327	.	+	0	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	CDS	14040325	14040491	0.54	+	0	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	exon	14040325	14040491	.	+	.	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	intron	14040492	14040670	.	+	.	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	CDS	14040671	14040909	0.86	+	1	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	exon	14040671	14040909	.	+	.	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	intron	14040910	14041010	.	+	.	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	CDS	14041011	14041159	0.99	+	2	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	exon	14041011	14041159	.	+	.	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	intron	14041160	14041271	.	+	.	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	CDS	14041272	14041487	0.98	+	0	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	exon	14041272	14041487	.	+	.	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
Ledus.S1	AUGUSTUS	stop_codon	14041488	14041490	.	+	0	transcript_id "Ledus.S1G142500.t1"; gene_id "Ledus.S1G142500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1433.t1 is derived from g8294.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10065529	10071470	.	+	.	Ledus.S2G131500
Ledus.S2	AUGUSTUS	transcript	10065529	10071470	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	start_codon	10065529	10065531	.	+	0	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10065529	10066982	0.99	+	0	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10065529	10066982	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10066983	10067077	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10067078	10067569	1	+	1	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10067078	10067569	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10067570	10067646	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10067647	10067821	1	+	1	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10067647	10067821	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10067822	10067917	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10067918	10068263	0.74	+	0	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10067918	10068263	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10068264	10068390	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10068391	10068451	0.56	+	2	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10068391	10068451	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10068452	10068789	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10068790	10068860	0.95	+	1	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10068790	10068860	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10068861	10069017	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10069018	10069068	0.74	+	2	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10069018	10069068	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10069069	10069489	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10069490	10069631	0.88	+	2	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10069490	10069631	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10069632	10069787	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10069788	10069877	0.7	+	1	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10069788	10069877	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10069878	10070034	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10070035	10070094	0.45	+	1	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10070035	10070094	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10070095	10070276	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10070277	10070316	0.57	+	1	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10070277	10070316	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10070317	10070408	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10070409	10070511	0.94	+	0	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10070409	10070511	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10070512	10070617	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10070618	10070677	0.98	+	2	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10070618	10070677	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10070678	10070830	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10070831	10070922	0.94	+	2	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10070831	10070922	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10070923	10071032	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10071033	10071069	0.84	+	0	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10071033	10071069	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10071070	10071282	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10071283	10071470	0.83	+	2	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10071283	10071470	.	+	.	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	stop_codon	10071471	10071473	.	+	0	transcript_id "Ledus.S2G131500.t1"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	transcript	10065529	10071470	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	start_codon	10065529	10065531	.	+	0	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10065529	10066982	0.99	+	0	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10065529	10066982	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10066983	10067077	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10067078	10067569	1	+	1	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10067078	10067569	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10067570	10067646	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10067647	10067821	1	+	1	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10067647	10067821	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10067822	10067917	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10067918	10068358	0.67	+	0	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10067918	10068358	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10068359	10068439	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10068440	10068451	0.67	+	0	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10068440	10068451	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10068452	10068796	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10068797	10068860	1	+	0	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10068797	10068860	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10068861	10069017	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10069018	10069068	0.77	+	2	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10069018	10069068	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10069069	10069489	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10069490	10069631	0.83	+	2	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10069490	10069631	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10069632	10069787	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10069788	10069877	0.69	+	1	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10069788	10069877	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10069878	10070034	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10070035	10070094	0.41	+	1	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10070035	10070094	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10070095	10070276	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10070277	10070316	0.47	+	1	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10070277	10070316	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10070317	10070408	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10070409	10070511	0.89	+	0	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10070409	10070511	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10070512	10070617	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10070618	10070677	0.99	+	2	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10070618	10070677	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10070678	10070830	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10070831	10070922	0.96	+	2	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10070831	10070922	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10070923	10071032	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10071033	10071069	0.76	+	0	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10071033	10071069	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	intron	10071070	10071282	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	CDS	10071283	10071470	0.72	+	2	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	exon	10071283	10071470	.	+	.	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
Ledus.S2	AUGUSTUS	stop_codon	10071471	10071473	.	+	0	transcript_id "Ledus.S2G131500.t2"; gene_id "Ledus.S2G131500"
# This transcript jg2464.t2 is derived from g9327.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2465.t1 is derived from g9328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18299544	18304629	.	+	.	Ledus.S2G234700
Ledus.S2	AUGUSTUS	transcript	18299544	18304629	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	start_codon	18299544	18299546	.	+	0	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18299544	18300046	1	+	0	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18299544	18300046	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18300047	18300236	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18300237	18300296	1	+	1	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18300237	18300296	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18300297	18300406	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18300407	18300530	1	+	1	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18300407	18300530	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18300531	18300692	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18300693	18300761	1	+	0	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18300693	18300761	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18300762	18300956	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18300957	18301055	1	+	0	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18300957	18301055	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18301056	18301247	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18301248	18301314	1	+	0	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18301248	18301314	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18301315	18301420	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18301421	18301485	0.99	+	2	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18301421	18301485	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18301486	18301680	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18301681	18301775	1	+	0	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18301681	18301775	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18301776	18301891	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18301892	18302016	1	+	1	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18301892	18302016	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18302017	18302168	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18302169	18302269	1	+	2	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18302169	18302269	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18302270	18302391	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18302392	18302608	0.99	+	0	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18302392	18302608	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18302609	18302718	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18302719	18302873	1	+	2	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18302719	18302873	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18302874	18303041	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18303042	18303167	1	+	0	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18303042	18303167	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18303168	18303261	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18303262	18304227	1	+	0	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18303262	18304227	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	intron	18304228	18304389	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	CDS	18304390	18304629	1	+	0	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	exon	18304390	18304629	.	+	.	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
Ledus.S2	AUGUSTUS	stop_codon	18304630	18304632	.	+	0	transcript_id "Ledus.S2G234700.t1"; gene_id "Ledus.S2G234700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3588.t1 is derived from g1024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9841235	9841618	.	+	.	Ledus.S1G100900
Ledus.S1	AUGUSTUS	transcript	9841235	9841618	.	+	.	transcript_id "Ledus.S1G100900.t1"; gene_id "Ledus.S1G100900"
Ledus.S1	AUGUSTUS	start_codon	9841235	9841237	.	+	0	transcript_id "Ledus.S1G100900.t1"; gene_id "Ledus.S1G100900"
Ledus.S1	AUGUSTUS	CDS	9841235	9841618	0.56	+	0	transcript_id "Ledus.S1G100900.t1"; gene_id "Ledus.S1G100900"
Ledus.S1	AUGUSTUS	exon	9841235	9841618	.	+	.	transcript_id "Ledus.S1G100900.t1"; gene_id "Ledus.S1G100900"
Ledus.S1	AUGUSTUS	stop_codon	9841619	9841621	.	+	0	transcript_id "Ledus.S1G100900.t1"; gene_id "Ledus.S1G100900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1716.t1 is derived from g8577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12091411	12092352	.	-	.	Ledus.S2G159800
Ledus.S2	AUGUSTUS	transcript	12091411	12092352	.	-	.	transcript_id "Ledus.S2G159800.t1"; gene_id "Ledus.S2G159800"
Ledus.S2	AUGUSTUS	stop_codon	12091408	12091410	.	-	0	transcript_id "Ledus.S2G159800.t1"; gene_id "Ledus.S2G159800"
Ledus.S2	AUGUSTUS	CDS	12091411	12092352	0.67	-	0	transcript_id "Ledus.S2G159800.t1"; gene_id "Ledus.S2G159800"
Ledus.S2	AUGUSTUS	exon	12091411	12092352	.	-	.	transcript_id "Ledus.S2G159800.t1"; gene_id "Ledus.S2G159800"
Ledus.S2	AUGUSTUS	start_codon	12092350	12092352	.	-	0	transcript_id "Ledus.S2G159800.t1"; gene_id "Ledus.S2G159800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1059.t1 is derived from g7920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7109238	7111109	.	+	.	Ledus.S2G094100
Ledus.S2	AUGUSTUS	transcript	7109238	7111109	.	+	.	transcript_id "Ledus.S2G094100.t1"; gene_id "Ledus.S2G094100"
Ledus.S2	AUGUSTUS	start_codon	7109238	7109240	.	+	0	transcript_id "Ledus.S2G094100.t1"; gene_id "Ledus.S2G094100"
Ledus.S2	AUGUSTUS	CDS	7109238	7110653	0.9	+	0	transcript_id "Ledus.S2G094100.t1"; gene_id "Ledus.S2G094100"
Ledus.S2	AUGUSTUS	exon	7109238	7110653	.	+	.	transcript_id "Ledus.S2G094100.t1"; gene_id "Ledus.S2G094100"
Ledus.S2	AUGUSTUS	intron	7110654	7110937	.	+	.	transcript_id "Ledus.S2G094100.t1"; gene_id "Ledus.S2G094100"
Ledus.S2	AUGUSTUS	CDS	7110938	7110975	0.71	+	0	transcript_id "Ledus.S2G094100.t1"; gene_id "Ledus.S2G094100"
Ledus.S2	AUGUSTUS	exon	7110938	7110975	.	+	.	transcript_id "Ledus.S2G094100.t1"; gene_id "Ledus.S2G094100"
Ledus.S2	AUGUSTUS	intron	7110976	7111069	.	+	.	transcript_id "Ledus.S2G094100.t1"; gene_id "Ledus.S2G094100"
Ledus.S2	AUGUSTUS	CDS	7111070	7111109	0.7	+	1	transcript_id "Ledus.S2G094100.t1"; gene_id "Ledus.S2G094100"
Ledus.S2	AUGUSTUS	exon	7111070	7111109	.	+	.	transcript_id "Ledus.S2G094100.t1"; gene_id "Ledus.S2G094100"
Ledus.S2	AUGUSTUS	stop_codon	7111110	7111112	.	+	0	transcript_id "Ledus.S2G094100.t1"; gene_id "Ledus.S2G094100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1878.t1 is derived from g8741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13149131	13150873	.	-	.	Ledus.S2G176000
Ledus.S2	AUGUSTUS	transcript	13149131	13150873	.	-	.	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	stop_codon	13149128	13149130	.	-	0	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	CDS	13149131	13149616	0.74	-	0	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	exon	13149131	13149616	.	-	.	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	intron	13149617	13149694	.	-	.	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	CDS	13149695	13149733	0.7	-	0	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	exon	13149695	13149733	.	-	.	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	intron	13149734	13149853	.	-	.	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	CDS	13149854	13149965	0.42	-	1	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	exon	13149854	13149965	.	-	.	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	intron	13149966	13150252	.	-	.	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	CDS	13150253	13150281	0.72	-	0	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	exon	13150253	13150281	.	-	.	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	intron	13150282	13150455	.	-	.	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	CDS	13150456	13150626	0.96	-	0	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	exon	13150456	13150626	.	-	.	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	intron	13150627	13150699	.	-	.	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	CDS	13150700	13150873	0.75	-	0	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	exon	13150700	13150873	.	-	.	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
Ledus.S2	AUGUSTUS	start_codon	13150871	13150873	.	-	0	transcript_id "Ledus.S2G176000.t1"; gene_id "Ledus.S2G176000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3752.t1 is derived from g1188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11601270	11604917	.	-	.	Ledus.S1G117300
Ledus.S1	AUGUSTUS	transcript	11601270	11604917	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	stop_codon	11601267	11601269	.	-	0	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	CDS	11601270	11602424	0.85	-	0	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	exon	11601270	11602424	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	intron	11602425	11602569	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	CDS	11602570	11602720	1	-	1	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	exon	11602570	11602720	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	intron	11602721	11602980	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	CDS	11602981	11603093	1	-	0	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	exon	11602981	11603093	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	intron	11603094	11603226	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	CDS	11603227	11603335	1	-	1	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	exon	11603227	11603335	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	intron	11603336	11603500	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	CDS	11603501	11603613	1	-	0	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	exon	11603501	11603613	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	intron	11603614	11603749	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	CDS	11603750	11603914	1	-	0	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	exon	11603750	11603914	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	intron	11603915	11604788	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	CDS	11604789	11604917	0.99	-	0	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	exon	11604789	11604917	.	-	.	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
Ledus.S1	AUGUSTUS	start_codon	11604915	11604917	.	-	0	transcript_id "Ledus.S1G117300.t1"; gene_id "Ledus.S1G117300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg367.t1 is derived from g7228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1980813	1981784	.	+	.	Ledus.S2G024900
Ledus.S2	AUGUSTUS	transcript	1980813	1981784	.	+	.	transcript_id "Ledus.S2G024900.t1"; gene_id "Ledus.S2G024900"
Ledus.S2	AUGUSTUS	start_codon	1980813	1980815	.	+	0	transcript_id "Ledus.S2G024900.t1"; gene_id "Ledus.S2G024900"
Ledus.S2	AUGUSTUS	CDS	1980813	1981784	0.34	+	0	transcript_id "Ledus.S2G024900.t1"; gene_id "Ledus.S2G024900"
Ledus.S2	AUGUSTUS	exon	1980813	1981784	.	+	.	transcript_id "Ledus.S2G024900.t1"; gene_id "Ledus.S2G024900"
Ledus.S2	AUGUSTUS	stop_codon	1981785	1981787	.	+	0	transcript_id "Ledus.S2G024900.t1"; gene_id "Ledus.S2G024900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1973.t1 is derived from g8836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13988145	13990964	.	+	.	Ledus.S2G185500
Ledus.S2	AUGUSTUS	transcript	13988145	13990964	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	start_codon	13988145	13988147	.	+	0	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	CDS	13988145	13988343	0.9	+	0	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	exon	13988145	13988343	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	intron	13988344	13988680	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	CDS	13988681	13988999	1	+	2	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	exon	13988681	13988999	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	intron	13989000	13989175	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	CDS	13989176	13989524	1	+	1	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	exon	13989176	13989524	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	intron	13989525	13989683	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	CDS	13989684	13989816	1	+	0	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	exon	13989684	13989816	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	intron	13989817	13989934	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	CDS	13989935	13989987	1	+	2	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	exon	13989935	13989987	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	intron	13989988	13990089	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	CDS	13990090	13990192	0.97	+	0	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	exon	13990090	13990192	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	intron	13990193	13990295	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	CDS	13990296	13990462	0.98	+	2	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	exon	13990296	13990462	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	intron	13990463	13990592	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	CDS	13990593	13990706	1	+	0	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	exon	13990593	13990706	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	intron	13990707	13990796	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	CDS	13990797	13990964	0.9	+	0	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	exon	13990797	13990964	.	+	.	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
Ledus.S2	AUGUSTUS	stop_codon	13990965	13990967	.	+	0	transcript_id "Ledus.S2G185500.t1"; gene_id "Ledus.S2G185500"
# This transcript jg1766.t2 is derived from g8628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1767.t1 is derived from g8629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12416003	12416761	.	+	.	Ledus.S2G164900
Ledus.S2	AUGUSTUS	transcript	12416003	12416761	.	+	.	transcript_id "Ledus.S2G164900.t1"; gene_id "Ledus.S2G164900"
Ledus.S2	AUGUSTUS	start_codon	12416003	12416005	.	+	0	transcript_id "Ledus.S2G164900.t1"; gene_id "Ledus.S2G164900"
Ledus.S2	AUGUSTUS	CDS	12416003	12416761	0.88	+	0	transcript_id "Ledus.S2G164900.t1"; gene_id "Ledus.S2G164900"
Ledus.S2	AUGUSTUS	exon	12416003	12416761	.	+	.	transcript_id "Ledus.S2G164900.t1"; gene_id "Ledus.S2G164900"
Ledus.S2	AUGUSTUS	stop_codon	12416762	12416764	.	+	0	transcript_id "Ledus.S2G164900.t1"; gene_id "Ledus.S2G164900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4899.t1 is derived from g2337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20569219	20569950	.	-	.	Ledus.S1G232000
Ledus.S1	AUGUSTUS	transcript	20569219	20569950	.	-	.	transcript_id "Ledus.S1G232000.t1"; gene_id "Ledus.S1G232000"
Ledus.S1	AUGUSTUS	stop_codon	20569216	20569218	.	-	0	transcript_id "Ledus.S1G232000.t1"; gene_id "Ledus.S1G232000"
Ledus.S1	AUGUSTUS	CDS	20569219	20569950	0.88	-	0	transcript_id "Ledus.S1G232000.t1"; gene_id "Ledus.S1G232000"
Ledus.S1	AUGUSTUS	exon	20569219	20569950	.	-	.	transcript_id "Ledus.S1G232000.t1"; gene_id "Ledus.S1G232000"
Ledus.S1	AUGUSTUS	start_codon	20569948	20569950	.	-	0	transcript_id "Ledus.S1G232000.t1"; gene_id "Ledus.S1G232000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2154.t1 is derived from g9017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15312713	15314230	.	-	.	Ledus.S2G203600
Ledus.S2	AUGUSTUS	transcript	15312713	15314230	.	-	.	transcript_id "Ledus.S2G203600.t1"; gene_id "Ledus.S2G203600"
Ledus.S2	AUGUSTUS	stop_codon	15312710	15312712	.	-	0	transcript_id "Ledus.S2G203600.t1"; gene_id "Ledus.S2G203600"
Ledus.S2	AUGUSTUS	CDS	15312713	15314230	1	-	0	transcript_id "Ledus.S2G203600.t1"; gene_id "Ledus.S2G203600"
Ledus.S2	AUGUSTUS	exon	15312713	15314230	.	-	.	transcript_id "Ledus.S2G203600.t1"; gene_id "Ledus.S2G203600"
Ledus.S2	AUGUSTUS	start_codon	15314228	15314230	.	-	0	transcript_id "Ledus.S2G203600.t1"; gene_id "Ledus.S2G203600"
Ledus.S2	AUGUSTUS	transcript	15312713	15313591	.	-	.	transcript_id "Ledus.S2G203600.t2"; gene_id "Ledus.S2G203600"
Ledus.S2	AUGUSTUS	stop_codon	15312710	15312712	.	-	0	transcript_id "Ledus.S2G203600.t2"; gene_id "Ledus.S2G203600"
Ledus.S2	AUGUSTUS	CDS	15312713	15313591	0.89	-	0	transcript_id "Ledus.S2G203600.t2"; gene_id "Ledus.S2G203600"
Ledus.S2	AUGUSTUS	exon	15312713	15313591	.	-	.	transcript_id "Ledus.S2G203600.t2"; gene_id "Ledus.S2G203600"
Ledus.S2	AUGUSTUS	start_codon	15313589	15313591	.	-	0	transcript_id "Ledus.S2G203600.t2"; gene_id "Ledus.S2G203600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6711.t1 is derived from g4154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33458195	33459063	.	+	.	Ledus.S1G413200
Ledus.S1	AUGUSTUS	transcript	33458195	33459063	.	+	.	transcript_id "Ledus.S1G413200.t1"; gene_id "Ledus.S1G413200"
Ledus.S1	AUGUSTUS	start_codon	33458195	33458197	.	+	0	transcript_id "Ledus.S1G413200.t1"; gene_id "Ledus.S1G413200"
Ledus.S1	AUGUSTUS	CDS	33458195	33458277	0.66	+	0	transcript_id "Ledus.S1G413200.t1"; gene_id "Ledus.S1G413200"
Ledus.S1	AUGUSTUS	exon	33458195	33458277	.	+	.	transcript_id "Ledus.S1G413200.t1"; gene_id "Ledus.S1G413200"
Ledus.S1	AUGUSTUS	intron	33458278	33458453	.	+	.	transcript_id "Ledus.S1G413200.t1"; gene_id "Ledus.S1G413200"
Ledus.S1	AUGUSTUS	CDS	33458454	33459063	0.51	+	1	transcript_id "Ledus.S1G413200.t1"; gene_id "Ledus.S1G413200"
Ledus.S1	AUGUSTUS	exon	33458454	33459063	.	+	.	transcript_id "Ledus.S1G413200.t1"; gene_id "Ledus.S1G413200"
Ledus.S1	AUGUSTUS	stop_codon	33459064	33459066	.	+	0	transcript_id "Ledus.S1G413200.t1"; gene_id "Ledus.S1G413200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3806.t1 is derived from g1242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12453154	12453794	.	-	.	Ledus.S1G122700
Ledus.S1	AUGUSTUS	transcript	12453154	12453794	.	-	.	transcript_id "Ledus.S1G122700.t1"; gene_id "Ledus.S1G122700"
Ledus.S1	AUGUSTUS	stop_codon	12453151	12453153	.	-	0	transcript_id "Ledus.S1G122700.t1"; gene_id "Ledus.S1G122700"
Ledus.S1	AUGUSTUS	CDS	12453154	12453158	0.83	-	2	transcript_id "Ledus.S1G122700.t1"; gene_id "Ledus.S1G122700"
Ledus.S1	AUGUSTUS	exon	12453154	12453158	.	-	.	transcript_id "Ledus.S1G122700.t1"; gene_id "Ledus.S1G122700"
Ledus.S1	AUGUSTUS	intron	12453159	12453391	.	-	.	transcript_id "Ledus.S1G122700.t1"; gene_id "Ledus.S1G122700"
Ledus.S1	AUGUSTUS	CDS	12453392	12453794	0.82	-	0	transcript_id "Ledus.S1G122700.t1"; gene_id "Ledus.S1G122700"
Ledus.S1	AUGUSTUS	exon	12453392	12453794	.	-	.	transcript_id "Ledus.S1G122700.t1"; gene_id "Ledus.S1G122700"
Ledus.S1	AUGUSTUS	start_codon	12453792	12453794	.	-	0	transcript_id "Ledus.S1G122700.t1"; gene_id "Ledus.S1G122700"
# This transcript jg1866.t2 is derived from g8729.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1867.t1 is derived from g8730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13006287	13008908	.	+	.	Ledus.S2G174900
Ledus.S2	AUGUSTUS	transcript	13006287	13008908	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	start_codon	13006287	13006289	.	+	0	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	CDS	13006287	13006448	0.92	+	0	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	exon	13006287	13006448	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	intron	13006449	13006620	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	CDS	13006621	13006734	0.99	+	0	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	exon	13006621	13006734	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	intron	13006735	13006857	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	CDS	13006858	13007020	1	+	0	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	exon	13006858	13007020	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	intron	13007021	13007131	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	CDS	13007132	13007268	0.7	+	2	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	exon	13007132	13007268	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	intron	13007269	13007363	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	CDS	13007364	13007464	1	+	0	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	exon	13007364	13007464	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	intron	13007465	13007566	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	CDS	13007567	13007684	0.97	+	1	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	exon	13007567	13007684	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	intron	13007685	13007798	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	CDS	13007799	13007995	0.63	+	0	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	exon	13007799	13007995	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	intron	13007996	13008261	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	CDS	13008262	13008369	1	+	1	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	exon	13008262	13008369	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	intron	13008370	13008526	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	CDS	13008527	13008908	1	+	1	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	exon	13008527	13008908	.	+	.	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
Ledus.S2	AUGUSTUS	stop_codon	13008909	13008911	.	+	0	transcript_id "Ledus.S2G174900.t1"; gene_id "Ledus.S2G174900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11582.t1 is derived from g5200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5389651	5390532	.	-	.	Ledus.S4G073800
Ledus.S4	AUGUSTUS	transcript	5389651	5390532	.	-	.	transcript_id "Ledus.S4G073800.t1"; gene_id "Ledus.S4G073800"
Ledus.S4	AUGUSTUS	stop_codon	5389648	5389650	.	-	0	transcript_id "Ledus.S4G073800.t1"; gene_id "Ledus.S4G073800"
Ledus.S4	AUGUSTUS	CDS	5389651	5390532	0.91	-	0	transcript_id "Ledus.S4G073800.t1"; gene_id "Ledus.S4G073800"
Ledus.S4	AUGUSTUS	exon	5389651	5390532	.	-	.	transcript_id "Ledus.S4G073800.t1"; gene_id "Ledus.S4G073800"
Ledus.S4	AUGUSTUS	start_codon	5390530	5390532	.	-	0	transcript_id "Ledus.S4G073800.t1"; gene_id "Ledus.S4G073800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6957.t1 is derived from g6488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	327155	327728	.	-	.	Ledus.C7G001800
Ledus.C7	AUGUSTUS	transcript	327155	327728	.	-	.	transcript_id "Ledus.C7G001800.t1"; gene_id "Ledus.C7G001800"
Ledus.C7	AUGUSTUS	stop_codon	327152	327154	.	-	0	transcript_id "Ledus.C7G001800.t1"; gene_id "Ledus.C7G001800"
Ledus.C7	AUGUSTUS	CDS	327155	327286	0.62	-	0	transcript_id "Ledus.C7G001800.t1"; gene_id "Ledus.C7G001800"
Ledus.C7	AUGUSTUS	exon	327155	327286	.	-	.	transcript_id "Ledus.C7G001800.t1"; gene_id "Ledus.C7G001800"
Ledus.C7	AUGUSTUS	intron	327287	327365	.	-	.	transcript_id "Ledus.C7G001800.t1"; gene_id "Ledus.C7G001800"
Ledus.C7	AUGUSTUS	CDS	327366	327728	0.56	-	0	transcript_id "Ledus.C7G001800.t1"; gene_id "Ledus.C7G001800"
Ledus.C7	AUGUSTUS	exon	327366	327728	.	-	.	transcript_id "Ledus.C7G001800.t1"; gene_id "Ledus.C7G001800"
Ledus.C7	AUGUSTUS	start_codon	327726	327728	.	-	0	transcript_id "Ledus.C7G001800.t1"; gene_id "Ledus.C7G001800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3074.t1 is derived from g509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5707759	5709059	.	+	.	Ledus.S1G049500
Ledus.S1	AUGUSTUS	transcript	5707759	5709059	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	start_codon	5707759	5707761	.	+	0	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	CDS	5707759	5707821	0.83	+	0	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	exon	5707759	5707821	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	intron	5707822	5708003	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	CDS	5708004	5708081	1	+	0	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	exon	5708004	5708081	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	intron	5708082	5708171	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	CDS	5708172	5708221	1	+	0	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	exon	5708172	5708221	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	intron	5708222	5708309	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	CDS	5708310	5708363	1	+	1	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	exon	5708310	5708363	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	intron	5708364	5708568	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	CDS	5708569	5708621	0.61	+	1	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	exon	5708569	5708621	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	intron	5708622	5708734	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	CDS	5708735	5708807	0.64	+	2	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	exon	5708735	5708807	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	intron	5708808	5708995	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	CDS	5708996	5709059	0.65	+	1	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	exon	5708996	5709059	.	+	.	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
Ledus.S1	AUGUSTUS	stop_codon	5709060	5709062	.	+	0	transcript_id "Ledus.S1G049500.t1"; gene_id "Ledus.S1G049500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5973.t1 is derived from g3416.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28113868	28114454	.	-	.	Ledus.S1G339400
Ledus.S1	AUGUSTUS	transcript	28113868	28114454	.	-	.	transcript_id "Ledus.S1G339400.t1"; gene_id "Ledus.S1G339400"
Ledus.S1	AUGUSTUS	stop_codon	28113865	28113867	.	-	0	transcript_id "Ledus.S1G339400.t1"; gene_id "Ledus.S1G339400"
Ledus.S1	AUGUSTUS	CDS	28113868	28113879	0.39	-	0	transcript_id "Ledus.S1G339400.t1"; gene_id "Ledus.S1G339400"
Ledus.S1	AUGUSTUS	exon	28113868	28113879	.	-	.	transcript_id "Ledus.S1G339400.t1"; gene_id "Ledus.S1G339400"
Ledus.S1	AUGUSTUS	intron	28113880	28114158	.	-	.	transcript_id "Ledus.S1G339400.t1"; gene_id "Ledus.S1G339400"
Ledus.S1	AUGUSTUS	CDS	28114159	28114243	0.56	-	1	transcript_id "Ledus.S1G339400.t1"; gene_id "Ledus.S1G339400"
Ledus.S1	AUGUSTUS	exon	28114159	28114243	.	-	.	transcript_id "Ledus.S1G339400.t1"; gene_id "Ledus.S1G339400"
Ledus.S1	AUGUSTUS	intron	28114244	28114323	.	-	.	transcript_id "Ledus.S1G339400.t1"; gene_id "Ledus.S1G339400"
Ledus.S1	AUGUSTUS	CDS	28114324	28114454	0.91	-	0	transcript_id "Ledus.S1G339400.t1"; gene_id "Ledus.S1G339400"
Ledus.S1	AUGUSTUS	exon	28114324	28114454	.	-	.	transcript_id "Ledus.S1G339400.t1"; gene_id "Ledus.S1G339400"
Ledus.S1	AUGUSTUS	start_codon	28114452	28114454	.	-	0	transcript_id "Ledus.S1G339400.t1"; gene_id "Ledus.S1G339400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11532.t1 is derived from g5150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5146856	5147749	.	-	.	Ledus.S4G068800
Ledus.S4	AUGUSTUS	transcript	5146856	5147749	.	-	.	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	stop_codon	5146853	5146855	.	-	0	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	CDS	5146856	5146967	0.75	-	1	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	exon	5146856	5146967	.	-	.	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	intron	5146968	5147103	.	-	.	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	CDS	5147104	5147196	0.36	-	1	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	exon	5147104	5147196	.	-	.	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	intron	5147197	5147354	.	-	.	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	CDS	5147355	5147377	0.67	-	0	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	exon	5147355	5147377	.	-	.	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	intron	5147378	5147563	.	-	.	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	CDS	5147564	5147749	0.98	-	0	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	exon	5147564	5147749	.	-	.	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
Ledus.S4	AUGUSTUS	start_codon	5147747	5147749	.	-	0	transcript_id "Ledus.S4G068800.t1"; gene_id "Ledus.S4G068800"
# This transcript jg2609.t2 is derived from g42.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2610.t1 is derived from g43.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	413586	416524	.	+	.	Ledus.S1G003100
Ledus.S1	AUGUSTUS	transcript	413586	416524	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	start_codon	413586	413588	.	+	0	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	413586	413825	0.45	+	0	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	413586	413825	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	413826	413922	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	413923	414033	1	+	0	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	413923	414033	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	414034	414113	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	414114	414217	1	+	0	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	414114	414217	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	414218	414319	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	414320	414362	1	+	1	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	414320	414362	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	414363	414466	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	414467	414565	0.98	+	0	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	414467	414565	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	414566	414678	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	414679	414748	0.82	+	0	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	414679	414748	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	414749	414899	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	414900	414991	0.89	+	2	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	414900	414991	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	414992	415102	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	415103	415136	1	+	0	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	415103	415136	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	415137	415246	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	415247	415331	1	+	2	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	415247	415331	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	415332	415471	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	415472	415561	1	+	1	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	415472	415561	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	415562	415672	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	415673	415720	1	+	1	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	415673	415720	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	415721	415814	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	415815	415847	1	+	1	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	415815	415847	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	415848	415967	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	415968	416076	0.99	+	1	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	415968	416076	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	416077	416174	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	416175	416360	1	+	0	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	416175	416360	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	intron	416361	416449	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	CDS	416450	416524	0.9	+	0	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	exon	416450	416524	.	+	.	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
Ledus.S1	AUGUSTUS	stop_codon	416525	416527	.	+	0	transcript_id "Ledus.S1G003100.t1"; gene_id "Ledus.S1G003100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9093.t1 is derived from g10123.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4549232	4550355	.	+	.	Ledus.S3G057000
Ledus.S3	AUGUSTUS	transcript	4549232	4550355	.	+	.	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	start_codon	4549232	4549234	.	+	0	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4549232	4549284	0.67	+	0	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4549232	4549284	.	+	.	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	intron	4549285	4549453	.	+	.	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4549454	4549510	0.94	+	1	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4549454	4549510	.	+	.	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	intron	4549511	4549688	.	+	.	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4549689	4549798	0.93	+	1	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4549689	4549798	.	+	.	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	intron	4549799	4550033	.	+	.	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4550034	4550144	1	+	2	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4550034	4550144	.	+	.	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	intron	4550145	4550332	.	+	.	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4550333	4550355	1	+	2	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4550333	4550355	.	+	.	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	stop_codon	4550356	4550358	.	+	0	transcript_id "Ledus.S3G057000.t1"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	transcript	4549278	4550355	.	+	.	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	start_codon	4549278	4549280	.	+	0	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4549278	4549284	0.54	+	0	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4549278	4549284	.	+	.	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	intron	4549285	4549726	.	+	.	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4549727	4549798	0.99	+	2	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4549727	4549798	.	+	.	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	intron	4549799	4550033	.	+	.	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4550034	4550144	0.99	+	2	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4550034	4550144	.	+	.	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	intron	4550145	4550332	.	+	.	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4550333	4550355	0.99	+	2	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4550333	4550355	.	+	.	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	stop_codon	4550356	4550358	.	+	0	transcript_id "Ledus.S3G057000.t2"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	transcript	4549232	4550355	.	+	.	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	start_codon	4549232	4549234	.	+	0	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4549232	4549284	0.57	+	0	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4549232	4549284	.	+	.	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	intron	4549285	4549453	.	+	.	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4549454	4549510	0.71	+	1	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4549454	4549510	.	+	.	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	intron	4549511	4549688	.	+	.	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4549689	4549798	0.69	+	1	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4549689	4549798	.	+	.	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	intron	4549799	4550042	.	+	.	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4550043	4550144	1	+	2	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4550043	4550144	.	+	.	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	intron	4550145	4550332	.	+	.	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	CDS	4550333	4550355	1	+	2	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	exon	4550333	4550355	.	+	.	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
Ledus.S3	AUGUSTUS	stop_codon	4550356	4550358	.	+	0	transcript_id "Ledus.S3G057000.t3"; gene_id "Ledus.S3G057000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12904.t1 is derived from g4396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	198555	198770	.	-	.	Ledus.C9G001200
Ledus.C9	AUGUSTUS	transcript	198555	198770	.	-	.	transcript_id "Ledus.C9G001200.t1"; gene_id "Ledus.C9G001200"
Ledus.C9	AUGUSTUS	stop_codon	198552	198554	.	-	0	transcript_id "Ledus.C9G001200.t1"; gene_id "Ledus.C9G001200"
Ledus.C9	AUGUSTUS	CDS	198555	198770	0.54	-	0	transcript_id "Ledus.C9G001200.t1"; gene_id "Ledus.C9G001200"
Ledus.C9	AUGUSTUS	exon	198555	198770	.	-	.	transcript_id "Ledus.C9G001200.t1"; gene_id "Ledus.C9G001200"
Ledus.C9	AUGUSTUS	start_codon	198768	198770	.	-	0	transcript_id "Ledus.C9G001200.t1"; gene_id "Ledus.C9G001200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9065.t1 is derived from g10095.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4314067	4316154	.	-	.	Ledus.S3G054200
Ledus.S3	AUGUSTUS	transcript	4314067	4315857	.	-	.	transcript_id "Ledus.S3G054200.t1"; gene_id "Ledus.S3G054200"
Ledus.S3	AUGUSTUS	stop_codon	4314064	4314066	.	-	0	transcript_id "Ledus.S3G054200.t1"; gene_id "Ledus.S3G054200"
Ledus.S3	AUGUSTUS	CDS	4314067	4315857	1	-	0	transcript_id "Ledus.S3G054200.t1"; gene_id "Ledus.S3G054200"
Ledus.S3	AUGUSTUS	exon	4314067	4315857	.	-	.	transcript_id "Ledus.S3G054200.t1"; gene_id "Ledus.S3G054200"
Ledus.S3	AUGUSTUS	start_codon	4315855	4315857	.	-	0	transcript_id "Ledus.S3G054200.t1"; gene_id "Ledus.S3G054200"
Ledus.S3	AUGUSTUS	transcript	4314067	4316154	.	-	.	transcript_id "Ledus.S3G054200.t2"; gene_id "Ledus.S3G054200"
Ledus.S3	AUGUSTUS	stop_codon	4314064	4314066	.	-	0	transcript_id "Ledus.S3G054200.t2"; gene_id "Ledus.S3G054200"
Ledus.S3	AUGUSTUS	CDS	4314067	4316154	1	-	0	transcript_id "Ledus.S3G054200.t2"; gene_id "Ledus.S3G054200"
Ledus.S3	AUGUSTUS	exon	4314067	4316154	.	-	.	transcript_id "Ledus.S3G054200.t2"; gene_id "Ledus.S3G054200"
Ledus.S3	AUGUSTUS	start_codon	4316152	4316154	.	-	0	transcript_id "Ledus.S3G054200.t2"; gene_id "Ledus.S3G054200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6092.t1 is derived from g3535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28880249	28882112	.	+	.	Ledus.S1G351300
Ledus.S1	AUGUSTUS	transcript	28880249	28882112	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	start_codon	28880249	28880251	.	+	0	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	CDS	28880249	28880515	0.97	+	0	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	exon	28880249	28880515	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	intron	28880516	28880640	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	CDS	28880641	28880817	1	+	0	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	exon	28880641	28880817	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	intron	28880818	28880913	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	CDS	28880914	28881063	0.97	+	0	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	exon	28880914	28881063	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	intron	28881064	28881181	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	CDS	28881182	28881283	0.99	+	0	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	exon	28881182	28881283	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	intron	28881284	28881413	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	CDS	28881414	28881484	1	+	0	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	exon	28881414	28881484	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	intron	28881485	28881681	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	CDS	28881682	28881749	1	+	1	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	exon	28881682	28881749	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	intron	28881750	28881870	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	CDS	28881871	28882112	0.6	+	2	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	exon	28881871	28882112	.	+	.	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
Ledus.S1	AUGUSTUS	stop_codon	28882113	28882115	.	+	0	transcript_id "Ledus.S1G351300.t1"; gene_id "Ledus.S1G351300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10042.t1 is derived from g11072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12140637	12143065	.	-	.	Ledus.S3G151900
Ledus.S3	AUGUSTUS	transcript	12140637	12143065	.	-	.	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	stop_codon	12140634	12140636	.	-	0	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	CDS	12140637	12141413	0.99	-	0	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	exon	12140637	12141413	.	-	.	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	intron	12141414	12141736	.	-	.	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	CDS	12141737	12141813	1	-	2	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	exon	12141737	12141813	.	-	.	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	intron	12141814	12141935	.	-	.	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	CDS	12141936	12142280	1	-	2	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	exon	12141936	12142280	.	-	.	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	intron	12142281	12142403	.	-	.	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	CDS	12142404	12142556	1	-	2	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	exon	12142404	12142556	.	-	.	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	intron	12142557	12142953	.	-	.	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	CDS	12142954	12143065	0.91	-	0	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	exon	12142954	12143065	.	-	.	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
Ledus.S3	AUGUSTUS	start_codon	12143063	12143065	.	-	0	transcript_id "Ledus.S3G151900.t1"; gene_id "Ledus.S3G151900"
# This transcript jg9056.t2 is derived from g10086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9057.t1 is derived from g10087.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4291084	4292190	.	-	.	Ledus.S3G053400
Ledus.S3	AUGUSTUS	transcript	4291084	4292190	.	-	.	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	stop_codon	4291081	4291083	.	-	0	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	CDS	4291084	4291365	0.97	-	0	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	exon	4291084	4291365	.	-	.	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	intron	4291366	4291503	.	-	.	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	CDS	4291504	4291547	0.99	-	2	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	exon	4291504	4291547	.	-	.	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	intron	4291548	4291678	.	-	.	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	CDS	4291679	4291736	0.99	-	0	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	exon	4291679	4291736	.	-	.	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	intron	4291737	4291829	.	-	.	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	CDS	4291830	4291923	1	-	1	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	exon	4291830	4291923	.	-	.	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	intron	4291924	4292053	.	-	.	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	CDS	4292054	4292190	1	-	0	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	exon	4292054	4292190	.	-	.	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	start_codon	4292188	4292190	.	-	0	transcript_id "Ledus.S3G053400.t1"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	transcript	4291084	4292190	.	-	.	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	stop_codon	4291081	4291083	.	-	0	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	CDS	4291084	4291248	0.5	-	0	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	exon	4291084	4291248	.	-	.	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	intron	4291249	4291355	.	-	.	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	CDS	4291356	4291365	0.91	-	1	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	exon	4291356	4291365	.	-	.	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	intron	4291366	4291503	.	-	.	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	CDS	4291504	4291547	0.93	-	0	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	exon	4291504	4291547	.	-	.	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	intron	4291548	4291688	.	-	.	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	CDS	4291689	4291736	0.93	-	0	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	exon	4291689	4291736	.	-	.	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	intron	4291737	4291829	.	-	.	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	CDS	4291830	4291923	1	-	1	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	exon	4291830	4291923	.	-	.	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	intron	4291924	4292053	.	-	.	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	CDS	4292054	4292190	0.99	-	0	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	exon	4292054	4292190	.	-	.	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
Ledus.S3	AUGUSTUS	start_codon	4292188	4292190	.	-	0	transcript_id "Ledus.S3G053400.t2"; gene_id "Ledus.S3G053400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6832.t1 is derived from g4276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34554645	34556285	.	-	.	Ledus.S1G425300
Ledus.S1	AUGUSTUS	transcript	34554645	34556285	.	-	.	transcript_id "Ledus.S1G425300.t1"; gene_id "Ledus.S1G425300"
Ledus.S1	AUGUSTUS	stop_codon	34554642	34554644	.	-	0	transcript_id "Ledus.S1G425300.t1"; gene_id "Ledus.S1G425300"
Ledus.S1	AUGUSTUS	CDS	34554645	34555654	0.78	-	2	transcript_id "Ledus.S1G425300.t1"; gene_id "Ledus.S1G425300"
Ledus.S1	AUGUSTUS	exon	34554645	34555654	.	-	.	transcript_id "Ledus.S1G425300.t1"; gene_id "Ledus.S1G425300"
Ledus.S1	AUGUSTUS	intron	34555655	34555774	.	-	.	transcript_id "Ledus.S1G425300.t1"; gene_id "Ledus.S1G425300"
Ledus.S1	AUGUSTUS	CDS	34555775	34555984	0.83	-	2	transcript_id "Ledus.S1G425300.t1"; gene_id "Ledus.S1G425300"
Ledus.S1	AUGUSTUS	exon	34555775	34555984	.	-	.	transcript_id "Ledus.S1G425300.t1"; gene_id "Ledus.S1G425300"
Ledus.S1	AUGUSTUS	intron	34555985	34556080	.	-	.	transcript_id "Ledus.S1G425300.t1"; gene_id "Ledus.S1G425300"
Ledus.S1	AUGUSTUS	CDS	34556081	34556285	0.41	-	0	transcript_id "Ledus.S1G425300.t1"; gene_id "Ledus.S1G425300"
Ledus.S1	AUGUSTUS	exon	34556081	34556285	.	-	.	transcript_id "Ledus.S1G425300.t1"; gene_id "Ledus.S1G425300"
Ledus.S1	AUGUSTUS	start_codon	34556283	34556285	.	-	0	transcript_id "Ledus.S1G425300.t1"; gene_id "Ledus.S1G425300"
# This transcript jg8075.t2 is derived from g12746.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8076.t1 is derived from g12747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9050926	9052864	.	+	.	Ledus.S5G085400
Ledus.S5	AUGUSTUS	transcript	9050926	9052864	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	start_codon	9050926	9050928	.	+	0	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	CDS	9050926	9050952	0.98	+	0	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	exon	9050926	9050952	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	intron	9050953	9051074	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	CDS	9051075	9051168	1	+	0	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	exon	9051075	9051168	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	intron	9051169	9051251	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	CDS	9051252	9051301	1	+	2	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	exon	9051252	9051301	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	intron	9051302	9051391	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	CDS	9051392	9051441	1	+	0	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	exon	9051392	9051441	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	intron	9051442	9051627	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	CDS	9051628	9051736	1	+	1	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	exon	9051628	9051736	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	intron	9051737	9051822	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	CDS	9051823	9051883	1	+	0	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	exon	9051823	9051883	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	intron	9051884	9051969	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	CDS	9051970	9052022	1	+	2	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	exon	9051970	9052022	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	intron	9052023	9052135	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	CDS	9052136	9052228	1	+	0	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	exon	9052136	9052228	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	intron	9052229	9052313	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	CDS	9052314	9052377	1	+	0	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	exon	9052314	9052377	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	intron	9052378	9052462	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	CDS	9052463	9052558	1	+	2	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	exon	9052463	9052558	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	intron	9052559	9052667	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	CDS	9052668	9052864	0.75	+	2	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	exon	9052668	9052864	.	+	.	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
Ledus.S5	AUGUSTUS	stop_codon	9052865	9052867	.	+	0	transcript_id "Ledus.S5G085400.t1"; gene_id "Ledus.S5G085400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6214.t1 is derived from g3657.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29687784	29689778	.	-	.	Ledus.S1G363500
Ledus.S1	AUGUSTUS	transcript	29687784	29689778	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	stop_codon	29687781	29687783	.	-	0	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	CDS	29687784	29688118	0.78	-	2	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	exon	29687784	29688118	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	intron	29688119	29688468	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	CDS	29688469	29688533	0.51	-	1	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	exon	29688469	29688533	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	intron	29688534	29688656	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	CDS	29688657	29688697	0.94	-	0	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	exon	29688657	29688697	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	intron	29688698	29688803	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	CDS	29688804	29688950	0.94	-	0	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	exon	29688804	29688950	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	intron	29688951	29689038	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	CDS	29689039	29689149	1	-	0	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	exon	29689039	29689149	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	intron	29689150	29689225	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	CDS	29689226	29689366	0.86	-	0	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	exon	29689226	29689366	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	intron	29689367	29689455	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	CDS	29689456	29689566	0.88	-	0	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	exon	29689456	29689566	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	intron	29689567	29689655	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	CDS	29689656	29689778	0.44	-	0	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	exon	29689656	29689778	.	-	.	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
Ledus.S1	AUGUSTUS	start_codon	29689776	29689778	.	-	0	transcript_id "Ledus.S1G363500.t1"; gene_id "Ledus.S1G363500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6642.t1 is derived from g4085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32829229	32830482	.	-	.	Ledus.S1G406300
Ledus.S1	AUGUSTUS	transcript	32829229	32830482	.	-	.	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	stop_codon	32829226	32829228	.	-	0	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	CDS	32829229	32829257	0.44	-	2	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	exon	32829229	32829257	.	-	.	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	intron	32829258	32829367	.	-	.	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	CDS	32829368	32829443	0.47	-	0	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	exon	32829368	32829443	.	-	.	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	intron	32829444	32829802	.	-	.	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	CDS	32829803	32830059	0.97	-	2	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	exon	32829803	32830059	.	-	.	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	intron	32830060	32830343	.	-	.	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	CDS	32830344	32830365	1	-	0	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	exon	32830344	32830365	.	-	.	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	intron	32830366	32830446	.	-	.	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	CDS	32830447	32830482	0.99	-	0	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	exon	32830447	32830482	.	-	.	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
Ledus.S1	AUGUSTUS	start_codon	32830480	32830482	.	-	0	transcript_id "Ledus.S1G406300.t1"; gene_id "Ledus.S1G406300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6582.t1 is derived from g4025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32491902	32492754	.	-	.	Ledus.S1G400300
Ledus.S1	AUGUSTUS	transcript	32491902	32492754	.	-	.	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	stop_codon	32491899	32491901	.	-	0	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	CDS	32491902	32491970	0.91	-	0	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	exon	32491902	32491970	.	-	.	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	intron	32491971	32492158	.	-	.	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	CDS	32492159	32492230	1	-	0	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	exon	32492159	32492230	.	-	.	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	intron	32492231	32492440	.	-	.	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	CDS	32492441	32492465	0.85	-	1	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	exon	32492441	32492465	.	-	.	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	intron	32492466	32492662	.	-	.	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	CDS	32492663	32492754	0.85	-	0	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	exon	32492663	32492754	.	-	.	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
Ledus.S1	AUGUSTUS	start_codon	32492752	32492754	.	-	0	transcript_id "Ledus.S1G400300.t1"; gene_id "Ledus.S1G400300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3881.t1 is derived from g1317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13368676	13370348	.	-	.	Ledus.S1G130200
Ledus.S1	AUGUSTUS	transcript	13368676	13370348	.	-	.	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	stop_codon	13368673	13368675	.	-	0	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	CDS	13368676	13368878	0.96	-	2	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	exon	13368676	13368878	.	-	.	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	intron	13368879	13368981	.	-	.	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	CDS	13368982	13369149	1	-	2	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	exon	13368982	13369149	.	-	.	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	intron	13369150	13369340	.	-	.	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	CDS	13369341	13369435	1	-	1	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	exon	13369341	13369435	.	-	.	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	intron	13369436	13369581	.	-	.	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	CDS	13369582	13369666	1	-	2	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	exon	13369582	13369666	.	-	.	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	intron	13369667	13369860	.	-	.	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	CDS	13369861	13369995	1	-	2	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	exon	13369861	13369995	.	-	.	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	intron	13369996	13370092	.	-	.	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	CDS	13370093	13370348	0.44	-	0	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	exon	13370093	13370348	.	-	.	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
Ledus.S1	AUGUSTUS	start_codon	13370346	13370348	.	-	0	transcript_id "Ledus.S1G130200.t1"; gene_id "Ledus.S1G130200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1667.t1 is derived from g8528.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11772836	11778547	.	+	.	Ledus.S2G154900
Ledus.S2	AUGUSTUS	transcript	11772836	11778547	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	start_codon	11772836	11772838	.	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11772836	11773018	0.67	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11772836	11773018	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11773019	11773195	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11773196	11773268	1	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11773196	11773268	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11773269	11773428	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11773429	11773650	1	+	2	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11773429	11773650	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11773651	11773786	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11773787	11773833	0.99	+	2	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11773787	11773833	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11773834	11773954	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11773955	11774053	1	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11773955	11774053	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11774054	11774496	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11774497	11774741	0.93	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11774497	11774741	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11774742	11774888	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11774889	11775029	0.57	+	1	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11774889	11775029	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11775030	11775138	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11775139	11775209	1	+	1	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11775139	11775209	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11775210	11775384	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11775385	11775464	1	+	2	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11775385	11775464	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11775465	11775766	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11775767	11775913	0.99	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11775767	11775913	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11775914	11776023	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11776024	11776086	0.92	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11776024	11776086	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11776087	11776188	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11776189	11776263	1	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11776189	11776263	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11776264	11776395	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11776396	11776550	1	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11776396	11776550	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11776551	11776707	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11776708	11776843	1	+	1	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11776708	11776843	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11776844	11776962	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11776963	11777094	1	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11776963	11777094	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11777095	11777239	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11777240	11777317	1	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11777240	11777317	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11777318	11777402	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11777403	11777458	0.92	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11777403	11777458	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11777459	11777574	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11777575	11777658	1	+	1	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11777575	11777658	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11777659	11777762	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11777763	11777919	1	+	1	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11777763	11777919	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11777920	11778089	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11778090	11778191	1	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11778090	11778191	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11778192	11778269	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11778270	11778316	1	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11778270	11778316	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	intron	11778317	11778492	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	CDS	11778493	11778547	0.99	+	1	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	exon	11778493	11778547	.	+	.	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
Ledus.S2	AUGUSTUS	stop_codon	11778548	11778550	.	+	0	transcript_id "Ledus.S2G154900.t1"; gene_id "Ledus.S2G154900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8332.t1 is derived from g13004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10799277	10800064	.	-	.	Ledus.S5G111000
Ledus.S5	AUGUSTUS	transcript	10799277	10800064	.	-	.	transcript_id "Ledus.S5G111000.t1"; gene_id "Ledus.S5G111000"
Ledus.S5	AUGUSTUS	stop_codon	10799274	10799276	.	-	0	transcript_id "Ledus.S5G111000.t1"; gene_id "Ledus.S5G111000"
Ledus.S5	AUGUSTUS	CDS	10799277	10799908	0.87	-	2	transcript_id "Ledus.S5G111000.t1"; gene_id "Ledus.S5G111000"
Ledus.S5	AUGUSTUS	exon	10799277	10799908	.	-	.	transcript_id "Ledus.S5G111000.t1"; gene_id "Ledus.S5G111000"
Ledus.S5	AUGUSTUS	intron	10799909	10800030	.	-	.	transcript_id "Ledus.S5G111000.t1"; gene_id "Ledus.S5G111000"
Ledus.S5	AUGUSTUS	CDS	10800031	10800064	0.55	-	0	transcript_id "Ledus.S5G111000.t1"; gene_id "Ledus.S5G111000"
Ledus.S5	AUGUSTUS	exon	10800031	10800064	.	-	.	transcript_id "Ledus.S5G111000.t1"; gene_id "Ledus.S5G111000"
Ledus.S5	AUGUSTUS	start_codon	10800062	10800064	.	-	0	transcript_id "Ledus.S5G111000.t1"; gene_id "Ledus.S5G111000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12440.t1 is derived from g6061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12019965	12020279	.	-	.	Ledus.S4G159600
Ledus.S4	AUGUSTUS	transcript	12019965	12020279	.	-	.	transcript_id "Ledus.S4G159600.t1"; gene_id "Ledus.S4G159600"
Ledus.S4	AUGUSTUS	stop_codon	12019962	12019964	.	-	0	transcript_id "Ledus.S4G159600.t1"; gene_id "Ledus.S4G159600"
Ledus.S4	AUGUSTUS	CDS	12019965	12020279	0.26	-	0	transcript_id "Ledus.S4G159600.t1"; gene_id "Ledus.S4G159600"
Ledus.S4	AUGUSTUS	exon	12019965	12020279	.	-	.	transcript_id "Ledus.S4G159600.t1"; gene_id "Ledus.S4G159600"
Ledus.S4	AUGUSTUS	start_codon	12020277	12020279	.	-	0	transcript_id "Ledus.S4G159600.t1"; gene_id "Ledus.S4G159600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11.t1 is derived from g9450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C43	AUGUSTUS	gene	22909	23324	.	+	.	Ledus.C43G000200
Ledus.C43	AUGUSTUS	transcript	22909	23324	.	+	.	transcript_id "Ledus.C43G000200.t1"; gene_id "Ledus.C43G000200"
Ledus.C43	AUGUSTUS	start_codon	22909	22911	.	+	0	transcript_id "Ledus.C43G000200.t1"; gene_id "Ledus.C43G000200"
Ledus.C43	AUGUSTUS	CDS	22909	23009	0.13	+	0	transcript_id "Ledus.C43G000200.t1"; gene_id "Ledus.C43G000200"
Ledus.C43	AUGUSTUS	exon	22909	23009	.	+	.	transcript_id "Ledus.C43G000200.t1"; gene_id "Ledus.C43G000200"
Ledus.C43	AUGUSTUS	intron	23010	23116	.	+	.	transcript_id "Ledus.C43G000200.t1"; gene_id "Ledus.C43G000200"
Ledus.C43	AUGUSTUS	CDS	23117	23324	0.75	+	1	transcript_id "Ledus.C43G000200.t1"; gene_id "Ledus.C43G000200"
Ledus.C43	AUGUSTUS	exon	23117	23324	.	+	.	transcript_id "Ledus.C43G000200.t1"; gene_id "Ledus.C43G000200"
Ledus.C43	AUGUSTUS	stop_codon	23325	23327	.	+	0	transcript_id "Ledus.C43G000200.t1"; gene_id "Ledus.C43G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11888.t1 is derived from g5507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7547408	7550709	.	+	.	Ledus.S4G104400
Ledus.S4	AUGUSTUS	transcript	7547408	7550709	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	start_codon	7547408	7547410	.	+	0	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7547408	7547410	0.99	+	0	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7547408	7547410	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7547411	7547566	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7547567	7547638	1	+	0	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7547567	7547638	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7547639	7547876	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7547877	7547960	1	+	0	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7547877	7547960	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7547961	7548130	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7548131	7548232	1	+	0	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7548131	7548232	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7548233	7548330	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7548331	7548362	0.92	+	0	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7548331	7548362	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7548363	7548467	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7548468	7548474	0.92	+	1	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7548468	7548474	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7548475	7548552	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7548553	7548633	0.93	+	0	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7548553	7548633	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7548634	7548754	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7548755	7548845	0.98	+	0	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7548755	7548845	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7548846	7548932	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7548933	7549009	1	+	2	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7548933	7549009	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7549010	7549175	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7549176	7549231	1	+	0	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7549176	7549231	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7549232	7549364	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7549365	7549460	1	+	1	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7549365	7549460	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7549461	7549651	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7549652	7549736	1	+	1	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7549652	7549736	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7549737	7550032	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7550033	7550146	1	+	0	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7550033	7550146	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7550147	7550243	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7550244	7550410	0.95	+	0	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7550244	7550410	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	intron	7550411	7550525	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	CDS	7550526	7550709	0.53	+	1	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	exon	7550526	7550709	.	+	.	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
Ledus.S4	AUGUSTUS	stop_codon	7550710	7550712	.	+	0	transcript_id "Ledus.S4G104400.t1"; gene_id "Ledus.S4G104400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9720.t1 is derived from g10750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9404086	9407245	.	-	.	Ledus.S3G119700
Ledus.S3	AUGUSTUS	transcript	9404086	9407245	.	-	.	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	stop_codon	9404083	9404085	.	-	0	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	CDS	9404086	9404257	0.92	-	1	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	exon	9404086	9404257	.	-	.	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	intron	9404258	9404336	.	-	.	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	CDS	9404337	9404404	1	-	0	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	exon	9404337	9404404	.	-	.	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	intron	9404405	9404509	.	-	.	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	CDS	9404510	9404878	0.99	-	0	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	exon	9404510	9404878	.	-	.	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	intron	9404879	9404978	.	-	.	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	CDS	9404979	9405452	1	-	0	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	exon	9404979	9405452	.	-	.	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	intron	9405453	9405619	.	-	.	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	CDS	9405620	9407032	1	-	0	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	exon	9405620	9407032	.	-	.	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	intron	9407033	9407131	.	-	.	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	CDS	9407132	9407245	0.5	-	0	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	exon	9407132	9407245	.	-	.	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
Ledus.S3	AUGUSTUS	start_codon	9407243	9407245	.	-	0	transcript_id "Ledus.S3G119700.t1"; gene_id "Ledus.S3G119700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg91.t1 is derived from g9504.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	385608	386047	.	-	.	Ledus.C8G005100
Ledus.C8	AUGUSTUS	transcript	385608	386047	.	-	.	transcript_id "Ledus.C8G005100.t1"; gene_id "Ledus.C8G005100"
Ledus.C8	AUGUSTUS	stop_codon	385605	385607	.	-	0	transcript_id "Ledus.C8G005100.t1"; gene_id "Ledus.C8G005100"
Ledus.C8	AUGUSTUS	CDS	385608	385881	1	-	1	transcript_id "Ledus.C8G005100.t1"; gene_id "Ledus.C8G005100"
Ledus.C8	AUGUSTUS	exon	385608	385881	.	-	.	transcript_id "Ledus.C8G005100.t1"; gene_id "Ledus.C8G005100"
Ledus.C8	AUGUSTUS	intron	385882	385964	.	-	.	transcript_id "Ledus.C8G005100.t1"; gene_id "Ledus.C8G005100"
Ledus.C8	AUGUSTUS	CDS	385965	386047	1	-	0	transcript_id "Ledus.C8G005100.t1"; gene_id "Ledus.C8G005100"
Ledus.C8	AUGUSTUS	exon	385965	386047	.	-	.	transcript_id "Ledus.C8G005100.t1"; gene_id "Ledus.C8G005100"
Ledus.C8	AUGUSTUS	start_codon	386045	386047	.	-	0	transcript_id "Ledus.C8G005100.t1"; gene_id "Ledus.C8G005100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7241.t1 is derived from g11912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	220588	223813	.	+	.	Ledus.S5G001900
Ledus.S5	AUGUSTUS	transcript	220588	223813	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	start_codon	220588	220590	.	+	0	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	220588	220672	0.99	+	0	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	220588	220672	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	220673	220761	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	220762	220904	0.99	+	2	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	220762	220904	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	220905	220997	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	220998	221055	1	+	0	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	220998	221055	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	221056	221178	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	221179	221326	1	+	2	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	221179	221326	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	221327	221599	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	221600	221635	1	+	1	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	221600	221635	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	221636	221743	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	221744	221947	1	+	1	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	221744	221947	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	221948	222044	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	222045	222109	1	+	1	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	222045	222109	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	222110	222260	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	222261	222407	0.99	+	2	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	222261	222407	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	222408	222519	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	222520	222625	0.84	+	2	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	222520	222625	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	222626	222734	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	222735	222881	1	+	1	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	222735	222881	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	222882	223005	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	223006	223084	1	+	1	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	223006	223084	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	223085	223299	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	223300	223375	1	+	0	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	223300	223375	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	223376	223465	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	223466	223557	1	+	2	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	223466	223557	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	intron	223558	223642	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	CDS	223643	223813	0.99	+	0	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	exon	223643	223813	.	+	.	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
Ledus.S5	AUGUSTUS	stop_codon	223814	223816	.	+	0	transcript_id "Ledus.S5G001900.t1"; gene_id "Ledus.S5G001900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7264.t1 is derived from g11935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	533076	534550	.	+	.	Ledus.S5G004200
Ledus.S5	AUGUSTUS	transcript	533076	534550	.	+	.	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	start_codon	533076	533078	.	+	0	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	CDS	533076	533351	0.98	+	0	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	exon	533076	533351	.	+	.	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	intron	533352	533633	.	+	.	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	CDS	533634	533752	1	+	0	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	exon	533634	533752	.	+	.	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	intron	533753	533848	.	+	.	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	CDS	533849	533975	1	+	1	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	exon	533849	533975	.	+	.	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	intron	533976	534102	.	+	.	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	CDS	534103	534251	0.96	+	0	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	exon	534103	534251	.	+	.	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	intron	534252	534368	.	+	.	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	CDS	534369	534431	1	+	1	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	exon	534369	534431	.	+	.	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	intron	534432	534525	.	+	.	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	CDS	534526	534550	1	+	1	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	exon	534526	534550	.	+	.	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
Ledus.S5	AUGUSTUS	stop_codon	534551	534553	.	+	0	transcript_id "Ledus.S5G004200.t1"; gene_id "Ledus.S5G004200"
# This transcript jg1091.t2 is derived from g7952.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1092.t1 is derived from g7953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7469797	7474092	.	-	.	Ledus.S2G097400
Ledus.S2	AUGUSTUS	transcript	7469797	7474092	.	-	.	transcript_id "Ledus.S2G097400.t1"; gene_id "Ledus.S2G097400"
Ledus.S2	AUGUSTUS	stop_codon	7469794	7469796	.	-	0	transcript_id "Ledus.S2G097400.t1"; gene_id "Ledus.S2G097400"
Ledus.S2	AUGUSTUS	CDS	7469797	7474092	0.85	-	0	transcript_id "Ledus.S2G097400.t1"; gene_id "Ledus.S2G097400"
Ledus.S2	AUGUSTUS	exon	7469797	7474092	.	-	.	transcript_id "Ledus.S2G097400.t1"; gene_id "Ledus.S2G097400"
Ledus.S2	AUGUSTUS	start_codon	7474090	7474092	.	-	0	transcript_id "Ledus.S2G097400.t1"; gene_id "Ledus.S2G097400"
Ledus.S2	AUGUSTUS	transcript	7469797	7470822	.	-	.	transcript_id "Ledus.S2G097400.t2"; gene_id "Ledus.S2G097400"
Ledus.S2	AUGUSTUS	stop_codon	7469794	7469796	.	-	0	transcript_id "Ledus.S2G097400.t2"; gene_id "Ledus.S2G097400"
Ledus.S2	AUGUSTUS	CDS	7469797	7470822	0.78	-	0	transcript_id "Ledus.S2G097400.t2"; gene_id "Ledus.S2G097400"
Ledus.S2	AUGUSTUS	exon	7469797	7470822	.	-	.	transcript_id "Ledus.S2G097400.t2"; gene_id "Ledus.S2G097400"
Ledus.S2	AUGUSTUS	start_codon	7470820	7470822	.	-	0	transcript_id "Ledus.S2G097400.t2"; gene_id "Ledus.S2G097400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3527.t1 is derived from g963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9131701	9132529	.	-	.	Ledus.S1G094800
Ledus.S1	AUGUSTUS	transcript	9131701	9132529	.	-	.	transcript_id "Ledus.S1G094800.t1"; gene_id "Ledus.S1G094800"
Ledus.S1	AUGUSTUS	stop_codon	9131698	9131700	.	-	0	transcript_id "Ledus.S1G094800.t1"; gene_id "Ledus.S1G094800"
Ledus.S1	AUGUSTUS	CDS	9131701	9131708	0.47	-	2	transcript_id "Ledus.S1G094800.t1"; gene_id "Ledus.S1G094800"
Ledus.S1	AUGUSTUS	exon	9131701	9131708	.	-	.	transcript_id "Ledus.S1G094800.t1"; gene_id "Ledus.S1G094800"
Ledus.S1	AUGUSTUS	intron	9131709	9131823	.	-	.	transcript_id "Ledus.S1G094800.t1"; gene_id "Ledus.S1G094800"
Ledus.S1	AUGUSTUS	CDS	9131824	9132529	0.28	-	0	transcript_id "Ledus.S1G094800.t1"; gene_id "Ledus.S1G094800"
Ledus.S1	AUGUSTUS	exon	9131824	9132529	.	-	.	transcript_id "Ledus.S1G094800.t1"; gene_id "Ledus.S1G094800"
Ledus.S1	AUGUSTUS	start_codon	9132527	9132529	.	-	0	transcript_id "Ledus.S1G094800.t1"; gene_id "Ledus.S1G094800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11872.t1 is derived from g5491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7451802	7456069	.	+	.	Ledus.S4G102800
Ledus.S4	AUGUSTUS	transcript	7451802	7456069	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	start_codon	7451802	7451804	.	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7451802	7451996	0.55	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7451802	7451996	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7451997	7452075	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7452076	7452213	0.98	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7452076	7452213	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7452214	7452299	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7452300	7452422	0.96	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7452300	7452422	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7452423	7452531	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7452532	7452720	0.85	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7452532	7452720	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7452721	7452926	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7452927	7453124	0.76	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7452927	7453124	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7453125	7453286	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7453287	7453436	0.88	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7453287	7453436	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7453437	7453614	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7453615	7453703	0.59	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7453615	7453703	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7453704	7453819	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7453820	7453912	1	+	1	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7453820	7453912	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7453913	7454064	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7454065	7454158	1	+	1	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7454065	7454158	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7454159	7454278	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7454279	7454332	0.95	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7454279	7454332	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7454333	7454416	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7454417	7454524	0.99	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7454417	7454524	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7454525	7454682	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7454683	7454847	0.98	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7454683	7454847	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7454848	7454939	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7454940	7455019	1	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7454940	7455019	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7455020	7455093	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7455094	7455166	1	+	1	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7455094	7455166	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7455167	7455297	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7455298	7455461	1	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7455298	7455461	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7455462	7455603	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7455604	7455688	1	+	1	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7455604	7455688	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7455689	7455840	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7455841	7455979	1	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7455841	7455979	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	intron	7455980	7456055	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	CDS	7456056	7456069	1	+	2	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	exon	7456056	7456069	.	+	.	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
Ledus.S4	AUGUSTUS	stop_codon	7456070	7456072	.	+	0	transcript_id "Ledus.S4G102800.t1"; gene_id "Ledus.S4G102800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11192.t1 is derived from g4810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2604627	2605040	.	-	.	Ledus.S4G034800
Ledus.S4	AUGUSTUS	transcript	2604627	2605040	.	-	.	transcript_id "Ledus.S4G034800.t1"; gene_id "Ledus.S4G034800"
Ledus.S4	AUGUSTUS	stop_codon	2604624	2604626	.	-	0	transcript_id "Ledus.S4G034800.t1"; gene_id "Ledus.S4G034800"
Ledus.S4	AUGUSTUS	CDS	2604627	2605040	0.46	-	0	transcript_id "Ledus.S4G034800.t1"; gene_id "Ledus.S4G034800"
Ledus.S4	AUGUSTUS	exon	2604627	2605040	.	-	.	transcript_id "Ledus.S4G034800.t1"; gene_id "Ledus.S4G034800"
Ledus.S4	AUGUSTUS	start_codon	2605038	2605040	.	-	0	transcript_id "Ledus.S4G034800.t1"; gene_id "Ledus.S4G034800"
# This transcript jg5843.t2 is derived from g3285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5843.t3 is derived from g3285.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5844.t1 is derived from g3286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27260218	27261361	.	-	.	Ledus.S1G326500
Ledus.S1	AUGUSTUS	transcript	27260218	27261361	.	-	.	transcript_id "Ledus.S1G326500.t1"; gene_id "Ledus.S1G326500"
Ledus.S1	AUGUSTUS	stop_codon	27260215	27260217	.	-	0	transcript_id "Ledus.S1G326500.t1"; gene_id "Ledus.S1G326500"
Ledus.S1	AUGUSTUS	CDS	27260218	27260454	0.98	-	0	transcript_id "Ledus.S1G326500.t1"; gene_id "Ledus.S1G326500"
Ledus.S1	AUGUSTUS	exon	27260218	27260454	.	-	.	transcript_id "Ledus.S1G326500.t1"; gene_id "Ledus.S1G326500"
Ledus.S1	AUGUSTUS	intron	27260455	27260538	.	-	.	transcript_id "Ledus.S1G326500.t1"; gene_id "Ledus.S1G326500"
Ledus.S1	AUGUSTUS	CDS	27260539	27260674	1	-	1	transcript_id "Ledus.S1G326500.t1"; gene_id "Ledus.S1G326500"
Ledus.S1	AUGUSTUS	exon	27260539	27260674	.	-	.	transcript_id "Ledus.S1G326500.t1"; gene_id "Ledus.S1G326500"
Ledus.S1	AUGUSTUS	intron	27260675	27260837	.	-	.	transcript_id "Ledus.S1G326500.t1"; gene_id "Ledus.S1G326500"
Ledus.S1	AUGUSTUS	CDS	27260838	27261361	0.94	-	0	transcript_id "Ledus.S1G326500.t1"; gene_id "Ledus.S1G326500"
Ledus.S1	AUGUSTUS	exon	27260838	27261361	.	-	.	transcript_id "Ledus.S1G326500.t1"; gene_id "Ledus.S1G326500"
Ledus.S1	AUGUSTUS	start_codon	27261359	27261361	.	-	0	transcript_id "Ledus.S1G326500.t1"; gene_id "Ledus.S1G326500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7445.t1 is derived from g12116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2731254	2731940	.	+	.	Ledus.S5G022300
Ledus.S5	AUGUSTUS	transcript	2731254	2731940	.	+	.	transcript_id "Ledus.S5G022300.t1"; gene_id "Ledus.S5G022300"
Ledus.S5	AUGUSTUS	start_codon	2731254	2731256	.	+	0	transcript_id "Ledus.S5G022300.t1"; gene_id "Ledus.S5G022300"
Ledus.S5	AUGUSTUS	CDS	2731254	2731940	0.49	+	0	transcript_id "Ledus.S5G022300.t1"; gene_id "Ledus.S5G022300"
Ledus.S5	AUGUSTUS	exon	2731254	2731940	.	+	.	transcript_id "Ledus.S5G022300.t1"; gene_id "Ledus.S5G022300"
Ledus.S5	AUGUSTUS	stop_codon	2731941	2731943	.	+	0	transcript_id "Ledus.S5G022300.t1"; gene_id "Ledus.S5G022300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12098.t1 is derived from g5717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9494277	9497835	.	-	.	Ledus.S4G125400
Ledus.S4	AUGUSTUS	transcript	9494277	9497835	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	stop_codon	9494274	9494276	.	-	0	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	CDS	9494277	9494740	1	-	2	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	exon	9494277	9494740	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	intron	9494741	9494932	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	CDS	9494933	9494947	0.7	-	2	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	exon	9494933	9494947	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	intron	9494948	9495288	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	CDS	9495289	9495325	1	-	0	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	exon	9495289	9495325	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	intron	9495326	9495424	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	CDS	9495425	9495472	1	-	0	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	exon	9495425	9495472	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	intron	9495473	9495562	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	CDS	9495563	9495619	1	-	0	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	exon	9495563	9495619	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	intron	9495620	9495694	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	CDS	9495695	9496593	1	-	2	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	exon	9495695	9496593	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	intron	9496594	9496682	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	CDS	9496683	9496966	0.89	-	1	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	exon	9496683	9496966	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	intron	9496967	9497068	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	CDS	9497069	9497389	0.87	-	1	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	exon	9497069	9497389	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	intron	9497390	9497509	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	CDS	9497510	9497641	0.83	-	1	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	exon	9497510	9497641	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	intron	9497642	9497770	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	CDS	9497771	9497835	0.97	-	0	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	exon	9497771	9497835	.	-	.	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
Ledus.S4	AUGUSTUS	start_codon	9497833	9497835	.	-	0	transcript_id "Ledus.S4G125400.t1"; gene_id "Ledus.S4G125400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7621.t1 is derived from g12292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4413013	4415322	.	-	.	Ledus.S5G039900
Ledus.S5	AUGUSTUS	transcript	4413013	4415322	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	stop_codon	4413010	4413012	.	-	0	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	CDS	4413013	4413174	0.54	-	0	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	exon	4413013	4413174	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	intron	4413175	4413246	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	CDS	4413247	4413324	0.76	-	0	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	exon	4413247	4413324	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	intron	4413325	4413410	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	CDS	4413411	4413496	0.67	-	2	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	exon	4413411	4413496	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	intron	4413497	4413592	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	CDS	4413593	4413732	0.64	-	1	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	exon	4413593	4413732	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	intron	4413733	4413841	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	CDS	4413842	4414113	0.74	-	0	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	exon	4413842	4414113	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	intron	4414114	4414191	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	CDS	4414192	4414330	0.99	-	1	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	exon	4414192	4414330	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	intron	4414331	4414428	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	CDS	4414429	4414502	1	-	0	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	exon	4414429	4414502	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	intron	4414503	4414790	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	CDS	4414791	4414921	1	-	2	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	exon	4414791	4414921	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	intron	4414922	4415000	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	CDS	4415001	4415322	1	-	0	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	exon	4415001	4415322	.	-	.	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
Ledus.S5	AUGUSTUS	start_codon	4415320	4415322	.	-	0	transcript_id "Ledus.S5G039900.t1"; gene_id "Ledus.S5G039900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1643.t1 is derived from g8504.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11522125	11522892	.	+	.	Ledus.S2G152500
Ledus.S2	AUGUSTUS	transcript	11522125	11522892	.	+	.	transcript_id "Ledus.S2G152500.t1"; gene_id "Ledus.S2G152500"
Ledus.S2	AUGUSTUS	start_codon	11522125	11522127	.	+	0	transcript_id "Ledus.S2G152500.t1"; gene_id "Ledus.S2G152500"
Ledus.S2	AUGUSTUS	CDS	11522125	11522892	1	+	0	transcript_id "Ledus.S2G152500.t1"; gene_id "Ledus.S2G152500"
Ledus.S2	AUGUSTUS	exon	11522125	11522892	.	+	.	transcript_id "Ledus.S2G152500.t1"; gene_id "Ledus.S2G152500"
Ledus.S2	AUGUSTUS	stop_codon	11522893	11522895	.	+	0	transcript_id "Ledus.S2G152500.t1"; gene_id "Ledus.S2G152500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1766.t1 is derived from g8628.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12413924	12415701	.	+	.	Ledus.S2G164800
Ledus.S2	AUGUSTUS	transcript	12413924	12415701	.	+	.	transcript_id "Ledus.S2G164800.t1"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	start_codon	12413924	12413926	.	+	0	transcript_id "Ledus.S2G164800.t1"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	CDS	12413924	12414083	0.62	+	0	transcript_id "Ledus.S2G164800.t1"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	exon	12413924	12414083	.	+	.	transcript_id "Ledus.S2G164800.t1"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	intron	12414084	12414262	.	+	.	transcript_id "Ledus.S2G164800.t1"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	CDS	12414263	12414415	0.61	+	2	transcript_id "Ledus.S2G164800.t1"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	exon	12414263	12414415	.	+	.	transcript_id "Ledus.S2G164800.t1"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	intron	12414416	12414520	.	+	.	transcript_id "Ledus.S2G164800.t1"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	CDS	12414521	12415701	0.96	+	2	transcript_id "Ledus.S2G164800.t1"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	exon	12414521	12415701	.	+	.	transcript_id "Ledus.S2G164800.t1"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	stop_codon	12415702	12415704	.	+	0	transcript_id "Ledus.S2G164800.t1"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	transcript	12414652	12415701	.	+	.	transcript_id "Ledus.S2G164800.t2"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	start_codon	12414652	12414654	.	+	0	transcript_id "Ledus.S2G164800.t2"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	CDS	12414652	12415701	0.74	+	0	transcript_id "Ledus.S2G164800.t2"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	exon	12414652	12415701	.	+	.	transcript_id "Ledus.S2G164800.t2"; gene_id "Ledus.S2G164800"
Ledus.S2	AUGUSTUS	stop_codon	12415702	12415704	.	+	0	transcript_id "Ledus.S2G164800.t2"; gene_id "Ledus.S2G164800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5626.t1 is derived from g3065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25431883	25435316	.	+	.	Ledus.S1G304700
Ledus.S1	AUGUSTUS	transcript	25431883	25435316	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	start_codon	25431883	25431885	.	+	0	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	CDS	25431883	25433341	1	+	0	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	exon	25431883	25433341	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	intron	25433342	25433469	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	CDS	25433470	25433605	0.94	+	2	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	exon	25433470	25433605	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	intron	25433606	25433717	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	CDS	25433718	25433814	1	+	1	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	exon	25433718	25433814	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	intron	25433815	25433895	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	CDS	25433896	25433955	1	+	0	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	exon	25433896	25433955	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	intron	25433956	25434245	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	CDS	25434246	25434346	1	+	0	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	exon	25434246	25434346	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	intron	25434347	25434486	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	CDS	25434487	25434590	1	+	1	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	exon	25434487	25434590	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	intron	25434591	25434990	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	CDS	25434991	25435316	0.78	+	2	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	exon	25434991	25435316	.	+	.	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
Ledus.S1	AUGUSTUS	stop_codon	25435317	25435319	.	+	0	transcript_id "Ledus.S1G304700.t1"; gene_id "Ledus.S1G304700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9071.t1 is derived from g10101.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4361044	4363033	.	-	.	Ledus.S3G054800
Ledus.S3	AUGUSTUS	transcript	4361059	4363033	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	stop_codon	4361056	4361058	.	-	0	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4361059	4361087	1	-	2	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4361059	4361087	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	intron	4361088	4361286	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4361287	4361368	1	-	0	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4361287	4361368	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	intron	4361369	4361576	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4361577	4361607	1	-	1	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4361577	4361607	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	intron	4361608	4362068	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4362069	4362081	0.99	-	2	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4362069	4362081	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	intron	4362082	4362296	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4362297	4362359	0.85	-	2	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4362297	4362359	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	intron	4362360	4362551	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4362552	4362661	0.91	-	1	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4362552	4362661	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	intron	4362662	4362977	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4362978	4363033	0.94	-	0	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4362978	4363033	.	-	.	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	start_codon	4363031	4363033	.	-	0	transcript_id "Ledus.S3G054800.t1"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	transcript	4361044	4363033	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	stop_codon	4361041	4361043	.	-	0	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4361044	4361054	0.91	-	2	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4361044	4361054	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	intron	4361055	4361286	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4361287	4361368	0.95	-	0	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4361287	4361368	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	intron	4361369	4361576	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4361577	4361607	0.95	-	1	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4361577	4361607	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	intron	4361608	4362068	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4362069	4362081	0.99	-	2	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4362069	4362081	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	intron	4362082	4362296	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4362297	4362359	0.88	-	2	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4362297	4362359	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	intron	4362360	4362551	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4362552	4362661	0.92	-	1	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4362552	4362661	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	intron	4362662	4362977	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	CDS	4362978	4363033	0.9	-	0	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	exon	4362978	4363033	.	-	.	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
Ledus.S3	AUGUSTUS	start_codon	4363031	4363033	.	-	0	transcript_id "Ledus.S3G054800.t2"; gene_id "Ledus.S3G054800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12311.t1 is derived from g5932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11163254	11163998	.	+	.	Ledus.S4G146700
Ledus.S4	AUGUSTUS	transcript	11163254	11163998	.	+	.	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	start_codon	11163254	11163256	.	+	0	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	CDS	11163254	11163267	0.94	+	0	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	exon	11163254	11163267	.	+	.	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	intron	11163268	11163390	.	+	.	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	CDS	11163391	11163422	1	+	1	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	exon	11163391	11163422	.	+	.	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	intron	11163423	11163520	.	+	.	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	CDS	11163521	11163588	1	+	2	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	exon	11163521	11163588	.	+	.	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	intron	11163589	11163662	.	+	.	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	CDS	11163663	11163747	1	+	0	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	exon	11163663	11163747	.	+	.	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	intron	11163748	11163819	.	+	.	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	CDS	11163820	11163998	1	+	2	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	exon	11163820	11163998	.	+	.	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
Ledus.S4	AUGUSTUS	stop_codon	11163999	11164001	.	+	0	transcript_id "Ledus.S4G146700.t1"; gene_id "Ledus.S4G146700"
# This transcript jg10099.t2 is derived from g11129.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10100.t1 is derived from g11130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12643673	12644171	.	-	.	Ledus.S3G157700
Ledus.S3	AUGUSTUS	transcript	12643673	12644171	.	-	.	transcript_id "Ledus.S3G157700.t1"; gene_id "Ledus.S3G157700"
Ledus.S3	AUGUSTUS	stop_codon	12643670	12643672	.	-	0	transcript_id "Ledus.S3G157700.t1"; gene_id "Ledus.S3G157700"
Ledus.S3	AUGUSTUS	CDS	12643673	12643781	0.99	-	1	transcript_id "Ledus.S3G157700.t1"; gene_id "Ledus.S3G157700"
Ledus.S3	AUGUSTUS	exon	12643673	12643781	.	-	.	transcript_id "Ledus.S3G157700.t1"; gene_id "Ledus.S3G157700"
Ledus.S3	AUGUSTUS	intron	12643782	12643935	.	-	.	transcript_id "Ledus.S3G157700.t1"; gene_id "Ledus.S3G157700"
Ledus.S3	AUGUSTUS	CDS	12643936	12644171	0.89	-	0	transcript_id "Ledus.S3G157700.t1"; gene_id "Ledus.S3G157700"
Ledus.S3	AUGUSTUS	exon	12643936	12644171	.	-	.	transcript_id "Ledus.S3G157700.t1"; gene_id "Ledus.S3G157700"
Ledus.S3	AUGUSTUS	start_codon	12644169	12644171	.	-	0	transcript_id "Ledus.S3G157700.t1"; gene_id "Ledus.S3G157700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2289.t1 is derived from g9152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17034947	17036135	.	+	.	Ledus.S2G217100
Ledus.S2	AUGUSTUS	transcript	17034947	17036135	.	+	.	transcript_id "Ledus.S2G217100.t1"; gene_id "Ledus.S2G217100"
Ledus.S2	AUGUSTUS	start_codon	17034947	17034949	.	+	0	transcript_id "Ledus.S2G217100.t1"; gene_id "Ledus.S2G217100"
Ledus.S2	AUGUSTUS	CDS	17034947	17035803	0.57	+	0	transcript_id "Ledus.S2G217100.t1"; gene_id "Ledus.S2G217100"
Ledus.S2	AUGUSTUS	exon	17034947	17035803	.	+	.	transcript_id "Ledus.S2G217100.t1"; gene_id "Ledus.S2G217100"
Ledus.S2	AUGUSTUS	intron	17035804	17035920	.	+	.	transcript_id "Ledus.S2G217100.t1"; gene_id "Ledus.S2G217100"
Ledus.S2	AUGUSTUS	CDS	17035921	17035929	0.82	+	1	transcript_id "Ledus.S2G217100.t1"; gene_id "Ledus.S2G217100"
Ledus.S2	AUGUSTUS	exon	17035921	17035929	.	+	.	transcript_id "Ledus.S2G217100.t1"; gene_id "Ledus.S2G217100"
Ledus.S2	AUGUSTUS	intron	17035930	17036080	.	+	.	transcript_id "Ledus.S2G217100.t1"; gene_id "Ledus.S2G217100"
Ledus.S2	AUGUSTUS	CDS	17036081	17036135	0.95	+	1	transcript_id "Ledus.S2G217100.t1"; gene_id "Ledus.S2G217100"
Ledus.S2	AUGUSTUS	exon	17036081	17036135	.	+	.	transcript_id "Ledus.S2G217100.t1"; gene_id "Ledus.S2G217100"
Ledus.S2	AUGUSTUS	stop_codon	17036136	17036138	.	+	0	transcript_id "Ledus.S2G217100.t1"; gene_id "Ledus.S2G217100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13036.t1 is derived from g6846.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3724745	3726227	.	+	.	Ledus.S6G009800
Ledus.S6	AUGUSTUS	transcript	3724745	3726227	.	+	.	transcript_id "Ledus.S6G009800.t1"; gene_id "Ledus.S6G009800"
Ledus.S6	AUGUSTUS	start_codon	3724745	3724747	.	+	0	transcript_id "Ledus.S6G009800.t1"; gene_id "Ledus.S6G009800"
Ledus.S6	AUGUSTUS	CDS	3724745	3725079	0.97	+	0	transcript_id "Ledus.S6G009800.t1"; gene_id "Ledus.S6G009800"
Ledus.S6	AUGUSTUS	exon	3724745	3725079	.	+	.	transcript_id "Ledus.S6G009800.t1"; gene_id "Ledus.S6G009800"
Ledus.S6	AUGUSTUS	intron	3725080	3725905	.	+	.	transcript_id "Ledus.S6G009800.t1"; gene_id "Ledus.S6G009800"
Ledus.S6	AUGUSTUS	CDS	3725906	3726227	0.95	+	1	transcript_id "Ledus.S6G009800.t1"; gene_id "Ledus.S6G009800"
Ledus.S6	AUGUSTUS	exon	3725906	3726227	.	+	.	transcript_id "Ledus.S6G009800.t1"; gene_id "Ledus.S6G009800"
Ledus.S6	AUGUSTUS	stop_codon	3726228	3726230	.	+	0	transcript_id "Ledus.S6G009800.t1"; gene_id "Ledus.S6G009800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2049.t1 is derived from g8912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14333875	14334381	.	+	.	Ledus.S2G193100
Ledus.S2	AUGUSTUS	transcript	14333875	14334381	.	+	.	transcript_id "Ledus.S2G193100.t1"; gene_id "Ledus.S2G193100"
Ledus.S2	AUGUSTUS	start_codon	14333875	14333877	.	+	0	transcript_id "Ledus.S2G193100.t1"; gene_id "Ledus.S2G193100"
Ledus.S2	AUGUSTUS	CDS	14333875	14334381	0.99	+	0	transcript_id "Ledus.S2G193100.t1"; gene_id "Ledus.S2G193100"
Ledus.S2	AUGUSTUS	exon	14333875	14334381	.	+	.	transcript_id "Ledus.S2G193100.t1"; gene_id "Ledus.S2G193100"
Ledus.S2	AUGUSTUS	stop_codon	14334382	14334384	.	+	0	transcript_id "Ledus.S2G193100.t1"; gene_id "Ledus.S2G193100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2793.t1 is derived from g227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3808852	3810340	.	-	.	Ledus.S1G021400
Ledus.S1	AUGUSTUS	transcript	3808852	3810340	.	-	.	transcript_id "Ledus.S1G021400.t1"; gene_id "Ledus.S1G021400"
Ledus.S1	AUGUSTUS	stop_codon	3808849	3808851	.	-	0	transcript_id "Ledus.S1G021400.t1"; gene_id "Ledus.S1G021400"
Ledus.S1	AUGUSTUS	CDS	3808852	3809052	1	-	0	transcript_id "Ledus.S1G021400.t1"; gene_id "Ledus.S1G021400"
Ledus.S1	AUGUSTUS	exon	3808852	3809052	.	-	.	transcript_id "Ledus.S1G021400.t1"; gene_id "Ledus.S1G021400"
Ledus.S1	AUGUSTUS	intron	3809053	3809614	.	-	.	transcript_id "Ledus.S1G021400.t1"; gene_id "Ledus.S1G021400"
Ledus.S1	AUGUSTUS	CDS	3809615	3810340	0.82	-	0	transcript_id "Ledus.S1G021400.t1"; gene_id "Ledus.S1G021400"
Ledus.S1	AUGUSTUS	exon	3809615	3810340	.	-	.	transcript_id "Ledus.S1G021400.t1"; gene_id "Ledus.S1G021400"
Ledus.S1	AUGUSTUS	start_codon	3810338	3810340	.	-	0	transcript_id "Ledus.S1G021400.t1"; gene_id "Ledus.S1G021400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12214.t1 is derived from g5833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10413096	10415237	.	-	.	Ledus.S4G137000
Ledus.S4	AUGUSTUS	transcript	10413096	10415237	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	stop_codon	10413093	10413095	.	-	0	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10413096	10413143	0.66	-	0	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10413096	10413143	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10413144	10413375	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10413376	10413426	0.5	-	0	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10413376	10413426	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10413427	10413534	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10413535	10413648	0.56	-	0	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10413535	10413648	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10413649	10413804	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10413805	10413979	1	-	1	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10413805	10413979	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10413980	10414087	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10414088	10414231	1	-	1	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10414088	10414231	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10414232	10414394	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10414395	10414506	1	-	2	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10414395	10414506	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10414507	10414588	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10414589	10414701	1	-	1	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10414589	10414701	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10414702	10414812	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10414813	10414881	0.9	-	1	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10414813	10414881	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10414882	10414987	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10414988	10415072	0.9	-	2	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10414988	10415072	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10415073	10415188	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10415189	10415237	0.65	-	0	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10415189	10415237	.	-	.	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	start_codon	10415235	10415237	.	-	0	transcript_id "Ledus.S4G137000.t1"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	transcript	10413096	10415237	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	stop_codon	10413093	10413095	.	-	0	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10413096	10413143	0.6	-	0	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10413096	10413143	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10413144	10413375	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10413376	10413426	0.51	-	0	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10413376	10413426	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10413427	10413534	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10413535	10413648	0.55	-	0	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10413535	10413648	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10413649	10413804	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10413805	10413979	1	-	1	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10413805	10413979	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10413980	10414087	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10414088	10414231	1	-	1	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10414088	10414231	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10414232	10414394	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10414395	10414506	1	-	2	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10414395	10414506	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10414507	10414588	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10414589	10414701	1	-	1	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10414589	10414701	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10414702	10414775	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10414776	10414881	0.91	-	2	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10414776	10414881	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10414882	10415045	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10415046	10415072	0.76	-	2	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10415046	10415072	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	intron	10415073	10415188	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	CDS	10415189	10415237	0.48	-	0	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	exon	10415189	10415237	.	-	.	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
Ledus.S4	AUGUSTUS	start_codon	10415235	10415237	.	-	0	transcript_id "Ledus.S4G137000.t2"; gene_id "Ledus.S4G137000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg657.t1 is derived from g7518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3928054	3928786	.	-	.	Ledus.S2G053900
Ledus.S2	AUGUSTUS	transcript	3928054	3928786	.	-	.	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	stop_codon	3928051	3928053	.	-	0	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	CDS	3928054	3928108	1	-	1	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	exon	3928054	3928108	.	-	.	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	intron	3928109	3928227	.	-	.	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	CDS	3928228	3928301	1	-	0	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	exon	3928228	3928301	.	-	.	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	intron	3928302	3928391	.	-	.	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	CDS	3928392	3928444	1	-	2	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	exon	3928392	3928444	.	-	.	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	intron	3928445	3928519	.	-	.	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	CDS	3928520	3928618	1	-	2	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	exon	3928520	3928618	.	-	.	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	intron	3928619	3928734	.	-	.	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	CDS	3928735	3928786	0.99	-	0	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	exon	3928735	3928786	.	-	.	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
Ledus.S2	AUGUSTUS	start_codon	3928784	3928786	.	-	0	transcript_id "Ledus.S2G053900.t1"; gene_id "Ledus.S2G053900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11284.t1 is derived from g4902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3373047	3374873	.	+	.	Ledus.S4G044000
Ledus.S4	AUGUSTUS	transcript	3373047	3374873	.	+	.	transcript_id "Ledus.S4G044000.t1"; gene_id "Ledus.S4G044000"
Ledus.S4	AUGUSTUS	start_codon	3373047	3373049	.	+	0	transcript_id "Ledus.S4G044000.t1"; gene_id "Ledus.S4G044000"
Ledus.S4	AUGUSTUS	CDS	3373047	3374873	1	+	0	transcript_id "Ledus.S4G044000.t1"; gene_id "Ledus.S4G044000"
Ledus.S4	AUGUSTUS	exon	3373047	3374873	.	+	.	transcript_id "Ledus.S4G044000.t1"; gene_id "Ledus.S4G044000"
Ledus.S4	AUGUSTUS	stop_codon	3374874	3374876	.	+	0	transcript_id "Ledus.S4G044000.t1"; gene_id "Ledus.S4G044000"
Ledus.S4	AUGUSTUS	transcript	3373686	3374873	.	+	.	transcript_id "Ledus.S4G044000.t2"; gene_id "Ledus.S4G044000"
Ledus.S4	AUGUSTUS	start_codon	3373686	3373688	.	+	0	transcript_id "Ledus.S4G044000.t2"; gene_id "Ledus.S4G044000"
Ledus.S4	AUGUSTUS	CDS	3373686	3374873	0.57	+	0	transcript_id "Ledus.S4G044000.t2"; gene_id "Ledus.S4G044000"
Ledus.S4	AUGUSTUS	exon	3373686	3374873	.	+	.	transcript_id "Ledus.S4G044000.t2"; gene_id "Ledus.S4G044000"
Ledus.S4	AUGUSTUS	stop_codon	3374874	3374876	.	+	0	transcript_id "Ledus.S4G044000.t2"; gene_id "Ledus.S4G044000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1432.t1 is derived from g8293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10064092	10065315	.	-	.	Ledus.S2G131400
Ledus.S2	AUGUSTUS	transcript	10064092	10065315	.	-	.	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	stop_codon	10064089	10064091	.	-	0	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	CDS	10064092	10064253	1	-	0	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	exon	10064092	10064253	.	-	.	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	intron	10064254	10064351	.	-	.	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	CDS	10064352	10064403	1	-	1	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	exon	10064352	10064403	.	-	.	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	intron	10064404	10064492	.	-	.	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	CDS	10064493	10064609	0.96	-	1	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	exon	10064493	10064609	.	-	.	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	intron	10064610	10064716	.	-	.	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	CDS	10064717	10064824	0.96	-	1	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	exon	10064717	10064824	.	-	.	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	intron	10064825	10064904	.	-	.	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	CDS	10064905	10065103	1	-	2	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	exon	10064905	10065103	.	-	.	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	intron	10065104	10065203	.	-	.	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	CDS	10065204	10065315	0.58	-	0	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	exon	10065204	10065315	.	-	.	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
Ledus.S2	AUGUSTUS	start_codon	10065313	10065315	.	-	0	transcript_id "Ledus.S2G131400.t1"; gene_id "Ledus.S2G131400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12030.t1 is derived from g5649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9009522	9010541	.	-	.	Ledus.S4G118600
Ledus.S4	AUGUSTUS	transcript	9009522	9010541	.	-	.	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	stop_codon	9009519	9009521	.	-	0	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	CDS	9009522	9009640	0.77	-	2	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	exon	9009522	9009640	.	-	.	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	intron	9009641	9009755	.	-	.	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	CDS	9009756	9009940	0.68	-	1	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	exon	9009756	9009940	.	-	.	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	intron	9009941	9010022	.	-	.	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	CDS	9010023	9010156	1	-	0	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	exon	9010023	9010156	.	-	.	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	intron	9010157	9010277	.	-	.	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	CDS	9010278	9010541	1	-	0	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	exon	9010278	9010541	.	-	.	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
Ledus.S4	AUGUSTUS	start_codon	9010539	9010541	.	-	0	transcript_id "Ledus.S4G118600.t1"; gene_id "Ledus.S4G118600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6731.t1 is derived from g4174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33610763	33613555	.	+	.	Ledus.S1G415200
Ledus.S1	AUGUSTUS	transcript	33610763	33613555	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	start_codon	33610763	33610765	.	+	0	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	CDS	33610763	33610855	0.85	+	0	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	exon	33610763	33610855	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	intron	33610856	33611131	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	CDS	33611132	33611261	1	+	0	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	exon	33611132	33611261	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	intron	33611262	33611434	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	CDS	33611435	33611573	1	+	2	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	exon	33611435	33611573	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	intron	33611574	33611679	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	CDS	33611680	33611892	1	+	1	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	exon	33611680	33611892	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	intron	33611893	33612026	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	CDS	33612027	33612165	1	+	1	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	exon	33612027	33612165	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	intron	33612166	33612386	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	CDS	33612387	33612419	1	+	0	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	exon	33612387	33612419	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	intron	33612420	33612505	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	CDS	33612506	33612656	1	+	0	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	exon	33612506	33612656	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	intron	33612657	33612840	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	CDS	33612841	33612950	1	+	2	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	exon	33612841	33612950	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	intron	33612951	33613055	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	CDS	33613056	33613153	1	+	0	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	exon	33613056	33613153	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	intron	33613154	33613348	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	CDS	33613349	33613418	1	+	1	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	exon	33613349	33613418	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	intron	33613419	33613501	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	CDS	33613502	33613555	1	+	0	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	exon	33613502	33613555	.	+	.	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
Ledus.S1	AUGUSTUS	stop_codon	33613556	33613558	.	+	0	transcript_id "Ledus.S1G415200.t1"; gene_id "Ledus.S1G415200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5392.t1 is derived from g2831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23973669	23976388	.	+	.	Ledus.S1G281300
Ledus.S1	AUGUSTUS	transcript	23974087	23976388	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	start_codon	23974087	23974089	.	+	0	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23974087	23974117	0.76	+	0	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23974087	23974117	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23974118	23974198	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23974199	23974260	0.99	+	2	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23974199	23974260	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23974261	23974424	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23974425	23974592	1	+	0	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23974425	23974592	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23974593	23974715	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23974716	23974802	0.97	+	0	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23974716	23974802	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23974803	23974914	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23974915	23974996	0.75	+	0	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23974915	23974996	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23974997	23975102	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23975103	23975229	0.75	+	2	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23975103	23975229	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23975230	23975323	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23975324	23975724	0.87	+	1	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23975324	23975724	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23975725	23975876	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23975877	23975949	0.89	+	2	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23975877	23975949	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23975950	23976297	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23976298	23976388	0.56	+	1	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23976298	23976388	.	+	.	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	stop_codon	23976389	23976391	.	+	0	transcript_id "Ledus.S1G281300.t1"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	transcript	23973669	23976388	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	start_codon	23973669	23973671	.	+	0	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23973669	23973814	0.74	+	0	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23973669	23973814	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23973815	23973906	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23973907	23973932	0.74	+	1	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23973907	23973932	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23973933	23974198	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23974199	23974260	0.95	+	2	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23974199	23974260	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23974261	23974424	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23974425	23974592	0.95	+	0	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23974425	23974592	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23974593	23974715	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23974716	23974802	0.96	+	0	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23974716	23974802	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23974803	23974914	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23974915	23974996	0.8	+	0	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23974915	23974996	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23974997	23975102	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23975103	23975229	0.79	+	2	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23975103	23975229	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23975230	23975323	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23975324	23975724	0.85	+	1	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23975324	23975724	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23975725	23975876	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23975877	23975949	0.86	+	2	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23975877	23975949	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	intron	23975950	23976297	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	CDS	23976298	23976388	0.62	+	1	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	exon	23976298	23976388	.	+	.	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
Ledus.S1	AUGUSTUS	stop_codon	23976389	23976391	.	+	0	transcript_id "Ledus.S1G281300.t2"; gene_id "Ledus.S1G281300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9999.t1 is derived from g11029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11787360	11789420	.	+	.	Ledus.S3G147600
Ledus.S3	AUGUSTUS	transcript	11787360	11789420	.	+	.	transcript_id "Ledus.S3G147600.t1"; gene_id "Ledus.S3G147600"
Ledus.S3	AUGUSTUS	start_codon	11787360	11787362	.	+	0	transcript_id "Ledus.S3G147600.t1"; gene_id "Ledus.S3G147600"
Ledus.S3	AUGUSTUS	CDS	11787360	11789420	1	+	0	transcript_id "Ledus.S3G147600.t1"; gene_id "Ledus.S3G147600"
Ledus.S3	AUGUSTUS	exon	11787360	11789420	.	+	.	transcript_id "Ledus.S3G147600.t1"; gene_id "Ledus.S3G147600"
Ledus.S3	AUGUSTUS	stop_codon	11789421	11789423	.	+	0	transcript_id "Ledus.S3G147600.t1"; gene_id "Ledus.S3G147600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11115.t1 is derived from g4733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1922171	1924014	.	+	.	Ledus.S4G027100
Ledus.S4	AUGUSTUS	transcript	1922171	1924014	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	start_codon	1922171	1922173	.	+	0	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	CDS	1922171	1922392	0.65	+	0	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	exon	1922171	1922392	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	intron	1922393	1922515	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	CDS	1922516	1922662	1	+	0	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	exon	1922516	1922662	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	intron	1922663	1922849	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	CDS	1922850	1922948	0.91	+	0	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	exon	1922850	1922948	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	intron	1922949	1923064	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	CDS	1923065	1923253	1	+	0	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	exon	1923065	1923253	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	intron	1923254	1923399	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	CDS	1923400	1923519	1	+	0	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	exon	1923400	1923519	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	intron	1923520	1923630	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	CDS	1923631	1923702	1	+	0	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	exon	1923631	1923702	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	intron	1923703	1923786	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	CDS	1923787	1924014	1	+	0	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	exon	1923787	1924014	.	+	.	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
Ledus.S4	AUGUSTUS	stop_codon	1924015	1924017	.	+	0	transcript_id "Ledus.S4G027100.t1"; gene_id "Ledus.S4G027100"
# This transcript jg5505.t2 is derived from g2944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5505.t3 is derived from g2944.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5506.t1 is derived from g2945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24662332	24663472	.	-	.	Ledus.S1G292700
Ledus.S1	AUGUSTUS	transcript	24662332	24662860	.	-	.	transcript_id "Ledus.S1G292700.t1"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	stop_codon	24662329	24662331	.	-	0	transcript_id "Ledus.S1G292700.t1"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	CDS	24662332	24662661	0.27	-	0	transcript_id "Ledus.S1G292700.t1"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	exon	24662332	24662661	.	-	.	transcript_id "Ledus.S1G292700.t1"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	intron	24662662	24662770	.	-	.	transcript_id "Ledus.S1G292700.t1"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	CDS	24662771	24662860	0.48	-	0	transcript_id "Ledus.S1G292700.t1"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	exon	24662771	24662860	.	-	.	transcript_id "Ledus.S1G292700.t1"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	start_codon	24662858	24662860	.	-	0	transcript_id "Ledus.S1G292700.t1"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	transcript	24662332	24663472	.	-	.	transcript_id "Ledus.S1G292700.t2"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	stop_codon	24662329	24662331	.	-	0	transcript_id "Ledus.S1G292700.t2"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	CDS	24662332	24662827	0.26	-	1	transcript_id "Ledus.S1G292700.t2"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	exon	24662332	24662827	.	-	.	transcript_id "Ledus.S1G292700.t2"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	intron	24662828	24662912	.	-	.	transcript_id "Ledus.S1G292700.t2"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	CDS	24662913	24663250	0.23	-	0	transcript_id "Ledus.S1G292700.t2"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	exon	24662913	24663250	.	-	.	transcript_id "Ledus.S1G292700.t2"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	intron	24663251	24663376	.	-	.	transcript_id "Ledus.S1G292700.t2"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	CDS	24663377	24663472	0.56	-	0	transcript_id "Ledus.S1G292700.t2"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	exon	24663377	24663472	.	-	.	transcript_id "Ledus.S1G292700.t2"; gene_id "Ledus.S1G292700"
Ledus.S1	AUGUSTUS	start_codon	24663470	24663472	.	-	0	transcript_id "Ledus.S1G292700.t2"; gene_id "Ledus.S1G292700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg178.t1 is derived from g7039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	548805	549268	.	+	.	Ledus.S2G006000
Ledus.S2	AUGUSTUS	transcript	548805	549268	.	+	.	transcript_id "Ledus.S2G006000.t1"; gene_id "Ledus.S2G006000"
Ledus.S2	AUGUSTUS	start_codon	548805	548807	.	+	0	transcript_id "Ledus.S2G006000.t1"; gene_id "Ledus.S2G006000"
Ledus.S2	AUGUSTUS	CDS	548805	549052	1	+	0	transcript_id "Ledus.S2G006000.t1"; gene_id "Ledus.S2G006000"
Ledus.S2	AUGUSTUS	exon	548805	549052	.	+	.	transcript_id "Ledus.S2G006000.t1"; gene_id "Ledus.S2G006000"
Ledus.S2	AUGUSTUS	intron	549053	549126	.	+	.	transcript_id "Ledus.S2G006000.t1"; gene_id "Ledus.S2G006000"
Ledus.S2	AUGUSTUS	CDS	549127	549268	1	+	1	transcript_id "Ledus.S2G006000.t1"; gene_id "Ledus.S2G006000"
Ledus.S2	AUGUSTUS	exon	549127	549268	.	+	.	transcript_id "Ledus.S2G006000.t1"; gene_id "Ledus.S2G006000"
Ledus.S2	AUGUSTUS	stop_codon	549269	549271	.	+	0	transcript_id "Ledus.S2G006000.t1"; gene_id "Ledus.S2G006000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4939.t1 is derived from g2377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20798451	20800625	.	-	.	Ledus.S1G236000
Ledus.S1	AUGUSTUS	transcript	20798451	20800625	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	stop_codon	20798448	20798450	.	-	0	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	CDS	20798451	20798696	0.86	-	0	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	exon	20798451	20798696	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	intron	20798697	20798818	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	CDS	20798819	20798889	0.8	-	2	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	exon	20798819	20798889	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	intron	20798890	20799153	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	CDS	20799154	20799348	0.99	-	2	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	exon	20799154	20799348	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	intron	20799349	20799629	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	CDS	20799630	20799730	0.84	-	1	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	exon	20799630	20799730	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	intron	20799731	20799880	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	CDS	20799881	20800077	0.26	-	0	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	exon	20799881	20800077	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	intron	20800078	20800148	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	CDS	20800149	20800205	0.21	-	0	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	exon	20800149	20800205	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	intron	20800206	20800487	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	CDS	20800488	20800625	0.49	-	0	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	exon	20800488	20800625	.	-	.	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
Ledus.S1	AUGUSTUS	start_codon	20800623	20800625	.	-	0	transcript_id "Ledus.S1G236000.t1"; gene_id "Ledus.S1G236000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6183.t1 is derived from g3626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29447237	29447883	.	-	.	Ledus.S1G360400
Ledus.S1	AUGUSTUS	transcript	29447237	29447883	.	-	.	transcript_id "Ledus.S1G360400.t1"; gene_id "Ledus.S1G360400"
Ledus.S1	AUGUSTUS	stop_codon	29447234	29447236	.	-	0	transcript_id "Ledus.S1G360400.t1"; gene_id "Ledus.S1G360400"
Ledus.S1	AUGUSTUS	CDS	29447237	29447296	0.72	-	0	transcript_id "Ledus.S1G360400.t1"; gene_id "Ledus.S1G360400"
Ledus.S1	AUGUSTUS	exon	29447237	29447296	.	-	.	transcript_id "Ledus.S1G360400.t1"; gene_id "Ledus.S1G360400"
Ledus.S1	AUGUSTUS	intron	29447297	29447394	.	-	.	transcript_id "Ledus.S1G360400.t1"; gene_id "Ledus.S1G360400"
Ledus.S1	AUGUSTUS	CDS	29447395	29447725	0.64	-	1	transcript_id "Ledus.S1G360400.t1"; gene_id "Ledus.S1G360400"
Ledus.S1	AUGUSTUS	exon	29447395	29447725	.	-	.	transcript_id "Ledus.S1G360400.t1"; gene_id "Ledus.S1G360400"
Ledus.S1	AUGUSTUS	intron	29447726	29447818	.	-	.	transcript_id "Ledus.S1G360400.t1"; gene_id "Ledus.S1G360400"
Ledus.S1	AUGUSTUS	CDS	29447819	29447883	0.29	-	0	transcript_id "Ledus.S1G360400.t1"; gene_id "Ledus.S1G360400"
Ledus.S1	AUGUSTUS	exon	29447819	29447883	.	-	.	transcript_id "Ledus.S1G360400.t1"; gene_id "Ledus.S1G360400"
Ledus.S1	AUGUSTUS	start_codon	29447881	29447883	.	-	0	transcript_id "Ledus.S1G360400.t1"; gene_id "Ledus.S1G360400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg798.t1 is derived from g7659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5198362	5200218	.	-	.	Ledus.S2G068000
Ledus.S2	AUGUSTUS	transcript	5198362	5200218	.	-	.	transcript_id "Ledus.S2G068000.t1"; gene_id "Ledus.S2G068000"
Ledus.S2	AUGUSTUS	stop_codon	5198359	5198361	.	-	0	transcript_id "Ledus.S2G068000.t1"; gene_id "Ledus.S2G068000"
Ledus.S2	AUGUSTUS	CDS	5198362	5200218	0.63	-	0	transcript_id "Ledus.S2G068000.t1"; gene_id "Ledus.S2G068000"
Ledus.S2	AUGUSTUS	exon	5198362	5200218	.	-	.	transcript_id "Ledus.S2G068000.t1"; gene_id "Ledus.S2G068000"
Ledus.S2	AUGUSTUS	start_codon	5200216	5200218	.	-	0	transcript_id "Ledus.S2G068000.t1"; gene_id "Ledus.S2G068000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12316.t1 is derived from g5937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11181439	11184597	.	-	.	Ledus.S4G147200
Ledus.S4	AUGUSTUS	transcript	11181439	11184597	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	stop_codon	11181436	11181438	.	-	0	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	CDS	11181439	11181483	1	-	0	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	exon	11181439	11181483	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	intron	11181484	11181575	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	CDS	11181576	11181683	1	-	0	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	exon	11181576	11181683	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	intron	11181684	11181949	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	CDS	11181950	11182008	0.86	-	2	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	exon	11181950	11182008	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	intron	11182009	11182397	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	CDS	11182398	11182427	0.98	-	2	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	exon	11182398	11182427	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	intron	11182428	11182641	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	CDS	11182642	11182730	0.97	-	1	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	exon	11182642	11182730	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	intron	11182731	11182893	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	CDS	11182894	11183117	0.85	-	0	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	exon	11182894	11183117	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	intron	11183118	11183211	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	CDS	11183212	11184597	0.99	-	0	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	exon	11183212	11184597	.	-	.	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
Ledus.S4	AUGUSTUS	start_codon	11184595	11184597	.	-	0	transcript_id "Ledus.S4G147200.t1"; gene_id "Ledus.S4G147200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6649.t1 is derived from g4092.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32853518	32856348	.	-	.	Ledus.S1G407000
Ledus.S1	AUGUSTUS	transcript	32853518	32856348	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	stop_codon	32853515	32853517	.	-	0	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	CDS	32853518	32853832	1	-	0	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	exon	32853518	32853832	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	intron	32853833	32853917	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	CDS	32853918	32854025	1	-	0	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	exon	32853918	32854025	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	intron	32854026	32854105	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	CDS	32854106	32854378	1	-	0	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	exon	32854106	32854378	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	intron	32854379	32854457	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	CDS	32854458	32854544	1	-	0	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	exon	32854458	32854544	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	intron	32854545	32854650	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	CDS	32854651	32854845	0.99	-	0	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	exon	32854651	32854845	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	intron	32854846	32854918	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	CDS	32854919	32855038	1	-	0	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	exon	32854919	32855038	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	intron	32855039	32855108	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	CDS	32855109	32855240	0.99	-	0	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	exon	32855109	32855240	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	intron	32855241	32855317	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	CDS	32855318	32855779	0.97	-	0	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	exon	32855318	32855779	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	intron	32855780	32855847	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	CDS	32855848	32855927	1	-	2	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	exon	32855848	32855927	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	intron	32855928	32856017	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	CDS	32856018	32856348	0.36	-	0	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	exon	32856018	32856348	.	-	.	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
Ledus.S1	AUGUSTUS	start_codon	32856346	32856348	.	-	0	transcript_id "Ledus.S1G407000.t1"; gene_id "Ledus.S1G407000"
# This transcript jg6604.t2 is derived from g4047.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6605.t1 is derived from g4048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32626842	32629028	.	+	.	Ledus.S1G402600
Ledus.S1	AUGUSTUS	transcript	32626842	32629028	.	+	.	transcript_id "Ledus.S1G402600.t1"; gene_id "Ledus.S1G402600"
Ledus.S1	AUGUSTUS	start_codon	32626842	32626844	.	+	0	transcript_id "Ledus.S1G402600.t1"; gene_id "Ledus.S1G402600"
Ledus.S1	AUGUSTUS	CDS	32626842	32629028	0.32	+	0	transcript_id "Ledus.S1G402600.t1"; gene_id "Ledus.S1G402600"
Ledus.S1	AUGUSTUS	exon	32626842	32629028	.	+	.	transcript_id "Ledus.S1G402600.t1"; gene_id "Ledus.S1G402600"
Ledus.S1	AUGUSTUS	stop_codon	32629029	32629031	.	+	0	transcript_id "Ledus.S1G402600.t1"; gene_id "Ledus.S1G402600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12108.t1 is derived from g5727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9541750	9542543	.	-	.	Ledus.S4G126400
Ledus.S4	AUGUSTUS	transcript	9541750	9542543	.	-	.	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	stop_codon	9541747	9541749	.	-	0	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	CDS	9541750	9541889	0.6	-	2	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	exon	9541750	9541889	.	-	.	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	intron	9541890	9541982	.	-	.	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	CDS	9541983	9542096	1	-	2	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	exon	9541983	9542096	.	-	.	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	intron	9542097	9542183	.	-	.	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	CDS	9542184	9542303	1	-	2	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	exon	9542184	9542303	.	-	.	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	intron	9542304	9542488	.	-	.	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	CDS	9542489	9542543	0.98	-	0	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	exon	9542489	9542543	.	-	.	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
Ledus.S4	AUGUSTUS	start_codon	9542541	9542543	.	-	0	transcript_id "Ledus.S4G126400.t1"; gene_id "Ledus.S4G126400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6839.t1 is derived from g4283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34570026	34572211	.	-	.	Ledus.S1G426000
Ledus.S1	AUGUSTUS	transcript	34570026	34572211	.	-	.	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	stop_codon	34570023	34570025	.	-	0	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	CDS	34570026	34570403	0.99	-	0	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	exon	34570026	34570403	.	-	.	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	intron	34570404	34570500	.	-	.	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	CDS	34570501	34570902	1	-	0	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	exon	34570501	34570902	.	-	.	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	intron	34570903	34570993	.	-	.	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	CDS	34570994	34571377	1	-	0	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	exon	34570994	34571377	.	-	.	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	intron	34571378	34571463	.	-	.	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	CDS	34571464	34571676	1	-	0	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	exon	34571464	34571676	.	-	.	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	intron	34571677	34571770	.	-	.	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	CDS	34571771	34572211	0.74	-	0	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	exon	34571771	34572211	.	-	.	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
Ledus.S1	AUGUSTUS	start_codon	34572209	34572211	.	-	0	transcript_id "Ledus.S1G426000.t1"; gene_id "Ledus.S1G426000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6994.t1 is derived from g6525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	626986	629139	.	-	.	Ledus.C7G005500
Ledus.C7	AUGUSTUS	transcript	626986	629139	.	-	.	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	stop_codon	626983	626985	.	-	0	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	CDS	626986	627028	0.98	-	1	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	exon	626986	627028	.	-	.	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	intron	627029	627228	.	-	.	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	CDS	627229	627469	0.87	-	2	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	exon	627229	627469	.	-	.	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	intron	627470	627685	.	-	.	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	CDS	627686	628331	0.99	-	0	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	exon	627686	628331	.	-	.	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	intron	628332	628446	.	-	.	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	CDS	628447	629139	0.54	-	0	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	exon	628447	629139	.	-	.	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
Ledus.C7	AUGUSTUS	start_codon	629137	629139	.	-	0	transcript_id "Ledus.C7G005500.t1"; gene_id "Ledus.C7G005500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7820.t1 is derived from g12491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7146363	7146808	.	-	.	Ledus.S5G059800
Ledus.S5	AUGUSTUS	transcript	7146363	7146808	.	-	.	transcript_id "Ledus.S5G059800.t1"; gene_id "Ledus.S5G059800"
Ledus.S5	AUGUSTUS	stop_codon	7146360	7146362	.	-	0	transcript_id "Ledus.S5G059800.t1"; gene_id "Ledus.S5G059800"
Ledus.S5	AUGUSTUS	CDS	7146363	7146389	0.37	-	0	transcript_id "Ledus.S5G059800.t1"; gene_id "Ledus.S5G059800"
Ledus.S5	AUGUSTUS	exon	7146363	7146389	.	-	.	transcript_id "Ledus.S5G059800.t1"; gene_id "Ledus.S5G059800"
Ledus.S5	AUGUSTUS	intron	7146390	7146518	.	-	.	transcript_id "Ledus.S5G059800.t1"; gene_id "Ledus.S5G059800"
Ledus.S5	AUGUSTUS	CDS	7146519	7146643	0.86	-	2	transcript_id "Ledus.S5G059800.t1"; gene_id "Ledus.S5G059800"
Ledus.S5	AUGUSTUS	exon	7146519	7146643	.	-	.	transcript_id "Ledus.S5G059800.t1"; gene_id "Ledus.S5G059800"
Ledus.S5	AUGUSTUS	intron	7146644	7146732	.	-	.	transcript_id "Ledus.S5G059800.t1"; gene_id "Ledus.S5G059800"
Ledus.S5	AUGUSTUS	CDS	7146733	7146808	0.94	-	0	transcript_id "Ledus.S5G059800.t1"; gene_id "Ledus.S5G059800"
Ledus.S5	AUGUSTUS	exon	7146733	7146808	.	-	.	transcript_id "Ledus.S5G059800.t1"; gene_id "Ledus.S5G059800"
Ledus.S5	AUGUSTUS	start_codon	7146806	7146808	.	-	0	transcript_id "Ledus.S5G059800.t1"; gene_id "Ledus.S5G059800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7671.t1 is derived from g12342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5092619	5097154	.	+	.	Ledus.S5G044900
Ledus.S5	AUGUSTUS	transcript	5092619	5097154	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	start_codon	5092619	5092621	.	+	0	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	CDS	5092619	5092693	0.97	+	0	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	exon	5092619	5092693	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	intron	5092694	5092829	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	CDS	5092830	5092994	0.98	+	0	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	exon	5092830	5092994	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	intron	5092995	5093109	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	CDS	5093110	5093310	0.97	+	0	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	exon	5093110	5093310	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	intron	5093311	5093537	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	CDS	5093538	5093607	1	+	0	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	exon	5093538	5093607	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	intron	5093608	5093780	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	CDS	5093781	5093920	0.97	+	2	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	exon	5093781	5093920	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	intron	5093921	5094035	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	CDS	5094036	5094120	1	+	0	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	exon	5094036	5094120	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	intron	5094121	5094261	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	CDS	5094262	5094376	1	+	2	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	exon	5094262	5094376	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	intron	5094377	5094652	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	CDS	5094653	5094815	1	+	1	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	exon	5094653	5094815	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	intron	5094816	5095027	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	CDS	5095028	5096163	1	+	0	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	exon	5095028	5096163	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	intron	5096164	5096261	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	CDS	5096262	5096389	1	+	1	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	exon	5096262	5096389	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	intron	5096390	5096527	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	CDS	5096528	5096594	0.94	+	2	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	exon	5096528	5096594	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	intron	5096595	5096715	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	CDS	5096716	5097154	0.33	+	1	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	exon	5096716	5097154	.	+	.	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
Ledus.S5	AUGUSTUS	stop_codon	5097155	5097157	.	+	0	transcript_id "Ledus.S5G044900.t1"; gene_id "Ledus.S5G044900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6038.t1 is derived from g3481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28620002	28621870	.	-	.	Ledus.S1G345900
Ledus.S1	AUGUSTUS	transcript	28620002	28621870	.	-	.	transcript_id "Ledus.S1G345900.t1"; gene_id "Ledus.S1G345900"
Ledus.S1	AUGUSTUS	stop_codon	28619999	28620001	.	-	0	transcript_id "Ledus.S1G345900.t1"; gene_id "Ledus.S1G345900"
Ledus.S1	AUGUSTUS	CDS	28620002	28620175	0.52	-	0	transcript_id "Ledus.S1G345900.t1"; gene_id "Ledus.S1G345900"
Ledus.S1	AUGUSTUS	exon	28620002	28620175	.	-	.	transcript_id "Ledus.S1G345900.t1"; gene_id "Ledus.S1G345900"
Ledus.S1	AUGUSTUS	intron	28620176	28620286	.	-	.	transcript_id "Ledus.S1G345900.t1"; gene_id "Ledus.S1G345900"
Ledus.S1	AUGUSTUS	CDS	28620287	28621870	0.79	-	0	transcript_id "Ledus.S1G345900.t1"; gene_id "Ledus.S1G345900"
Ledus.S1	AUGUSTUS	exon	28620287	28621870	.	-	.	transcript_id "Ledus.S1G345900.t1"; gene_id "Ledus.S1G345900"
Ledus.S1	AUGUSTUS	start_codon	28621868	28621870	.	-	0	transcript_id "Ledus.S1G345900.t1"; gene_id "Ledus.S1G345900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7596.t1 is derived from g12267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4285864	4287261	.	+	.	Ledus.S5G037400
Ledus.S5	AUGUSTUS	transcript	4285864	4287261	.	+	.	transcript_id "Ledus.S5G037400.t1"; gene_id "Ledus.S5G037400"
Ledus.S5	AUGUSTUS	start_codon	4285864	4285866	.	+	0	transcript_id "Ledus.S5G037400.t1"; gene_id "Ledus.S5G037400"
Ledus.S5	AUGUSTUS	CDS	4285864	4287261	0.98	+	0	transcript_id "Ledus.S5G037400.t1"; gene_id "Ledus.S5G037400"
Ledus.S5	AUGUSTUS	exon	4285864	4287261	.	+	.	transcript_id "Ledus.S5G037400.t1"; gene_id "Ledus.S5G037400"
Ledus.S5	AUGUSTUS	stop_codon	4287262	4287264	.	+	0	transcript_id "Ledus.S5G037400.t1"; gene_id "Ledus.S5G037400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12985.t1 is derived from g6795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1685358	1685579	.	-	.	Ledus.S6G004700
Ledus.S6	AUGUSTUS	transcript	1685358	1685579	.	-	.	transcript_id "Ledus.S6G004700.t1"; gene_id "Ledus.S6G004700"
Ledus.S6	AUGUSTUS	stop_codon	1685355	1685357	.	-	0	transcript_id "Ledus.S6G004700.t1"; gene_id "Ledus.S6G004700"
Ledus.S6	AUGUSTUS	CDS	1685358	1685579	0.85	-	0	transcript_id "Ledus.S6G004700.t1"; gene_id "Ledus.S6G004700"
Ledus.S6	AUGUSTUS	exon	1685358	1685579	.	-	.	transcript_id "Ledus.S6G004700.t1"; gene_id "Ledus.S6G004700"
Ledus.S6	AUGUSTUS	start_codon	1685577	1685579	.	-	0	transcript_id "Ledus.S6G004700.t1"; gene_id "Ledus.S6G004700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8664.t1 is derived from g9694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1246441	1248474	.	-	.	Ledus.S3G014100
Ledus.S3	AUGUSTUS	transcript	1246441	1248474	.	-	.	transcript_id "Ledus.S3G014100.t1"; gene_id "Ledus.S3G014100"
Ledus.S3	AUGUSTUS	stop_codon	1246438	1246440	.	-	0	transcript_id "Ledus.S3G014100.t1"; gene_id "Ledus.S3G014100"
Ledus.S3	AUGUSTUS	CDS	1246441	1246851	0.55	-	0	transcript_id "Ledus.S3G014100.t1"; gene_id "Ledus.S3G014100"
Ledus.S3	AUGUSTUS	exon	1246441	1246851	.	-	.	transcript_id "Ledus.S3G014100.t1"; gene_id "Ledus.S3G014100"
Ledus.S3	AUGUSTUS	intron	1246852	1246944	.	-	.	transcript_id "Ledus.S3G014100.t1"; gene_id "Ledus.S3G014100"
Ledus.S3	AUGUSTUS	CDS	1246945	1248294	0.92	-	0	transcript_id "Ledus.S3G014100.t1"; gene_id "Ledus.S3G014100"
Ledus.S3	AUGUSTUS	exon	1246945	1248294	.	-	.	transcript_id "Ledus.S3G014100.t1"; gene_id "Ledus.S3G014100"
Ledus.S3	AUGUSTUS	intron	1248295	1248411	.	-	.	transcript_id "Ledus.S3G014100.t1"; gene_id "Ledus.S3G014100"
Ledus.S3	AUGUSTUS	CDS	1248412	1248474	0.33	-	0	transcript_id "Ledus.S3G014100.t1"; gene_id "Ledus.S3G014100"
Ledus.S3	AUGUSTUS	exon	1248412	1248474	.	-	.	transcript_id "Ledus.S3G014100.t1"; gene_id "Ledus.S3G014100"
Ledus.S3	AUGUSTUS	start_codon	1248472	1248474	.	-	0	transcript_id "Ledus.S3G014100.t1"; gene_id "Ledus.S3G014100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3513.t1 is derived from g948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8978906	8980472	.	-	.	Ledus.S1G093400
Ledus.S1	AUGUSTUS	transcript	8978906	8980472	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	stop_codon	8978903	8978905	.	-	0	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	CDS	8978906	8979009	0.99	-	2	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	exon	8978906	8979009	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	intron	8979010	8979096	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	CDS	8979097	8979161	0.99	-	1	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	exon	8979097	8979161	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	intron	8979162	8979263	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	CDS	8979264	8979349	0.99	-	0	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	exon	8979264	8979349	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	intron	8979350	8979411	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	CDS	8979412	8979462	0.99	-	0	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	exon	8979412	8979462	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	intron	8979463	8979634	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	CDS	8979635	8979703	0.92	-	0	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	exon	8979635	8979703	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	intron	8979704	8979785	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	CDS	8979786	8979879	1	-	1	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	exon	8979786	8979879	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	intron	8979880	8979961	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	CDS	8979962	8980131	1	-	0	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	exon	8979962	8980131	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	intron	8980132	8980232	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	CDS	8980233	8980472	1	-	0	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	exon	8980233	8980472	.	-	.	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
Ledus.S1	AUGUSTUS	start_codon	8980470	8980472	.	-	0	transcript_id "Ledus.S1G093400.t1"; gene_id "Ledus.S1G093400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5849.t1 is derived from g3291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27313589	27315542	.	+	.	Ledus.S1G327000
Ledus.S1	AUGUSTUS	transcript	27313589	27315542	.	+	.	transcript_id "Ledus.S1G327000.t1"; gene_id "Ledus.S1G327000"
Ledus.S1	AUGUSTUS	start_codon	27313589	27313591	.	+	0	transcript_id "Ledus.S1G327000.t1"; gene_id "Ledus.S1G327000"
Ledus.S1	AUGUSTUS	CDS	27313589	27313622	0.33	+	0	transcript_id "Ledus.S1G327000.t1"; gene_id "Ledus.S1G327000"
Ledus.S1	AUGUSTUS	exon	27313589	27313622	.	+	.	transcript_id "Ledus.S1G327000.t1"; gene_id "Ledus.S1G327000"
Ledus.S1	AUGUSTUS	intron	27313623	27313690	.	+	.	transcript_id "Ledus.S1G327000.t1"; gene_id "Ledus.S1G327000"
Ledus.S1	AUGUSTUS	CDS	27313691	27314967	1	+	2	transcript_id "Ledus.S1G327000.t1"; gene_id "Ledus.S1G327000"
Ledus.S1	AUGUSTUS	exon	27313691	27314967	.	+	.	transcript_id "Ledus.S1G327000.t1"; gene_id "Ledus.S1G327000"
Ledus.S1	AUGUSTUS	intron	27314968	27315086	.	+	.	transcript_id "Ledus.S1G327000.t1"; gene_id "Ledus.S1G327000"
Ledus.S1	AUGUSTUS	CDS	27315087	27315542	1	+	0	transcript_id "Ledus.S1G327000.t1"; gene_id "Ledus.S1G327000"
Ledus.S1	AUGUSTUS	exon	27315087	27315542	.	+	.	transcript_id "Ledus.S1G327000.t1"; gene_id "Ledus.S1G327000"
Ledus.S1	AUGUSTUS	stop_codon	27315543	27315545	.	+	0	transcript_id "Ledus.S1G327000.t1"; gene_id "Ledus.S1G327000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6468.t1 is derived from g3911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31407660	31409189	.	+	.	Ledus.S1G388900
Ledus.S1	AUGUSTUS	transcript	31407660	31409189	.	+	.	transcript_id "Ledus.S1G388900.t1"; gene_id "Ledus.S1G388900"
Ledus.S1	AUGUSTUS	start_codon	31407660	31407662	.	+	0	transcript_id "Ledus.S1G388900.t1"; gene_id "Ledus.S1G388900"
Ledus.S1	AUGUSTUS	CDS	31407660	31407813	0.23	+	0	transcript_id "Ledus.S1G388900.t1"; gene_id "Ledus.S1G388900"
Ledus.S1	AUGUSTUS	exon	31407660	31407813	.	+	.	transcript_id "Ledus.S1G388900.t1"; gene_id "Ledus.S1G388900"
Ledus.S1	AUGUSTUS	intron	31407814	31408101	.	+	.	transcript_id "Ledus.S1G388900.t1"; gene_id "Ledus.S1G388900"
Ledus.S1	AUGUSTUS	CDS	31408102	31408584	0.67	+	2	transcript_id "Ledus.S1G388900.t1"; gene_id "Ledus.S1G388900"
Ledus.S1	AUGUSTUS	exon	31408102	31408584	.	+	.	transcript_id "Ledus.S1G388900.t1"; gene_id "Ledus.S1G388900"
Ledus.S1	AUGUSTUS	intron	31408585	31408887	.	+	.	transcript_id "Ledus.S1G388900.t1"; gene_id "Ledus.S1G388900"
Ledus.S1	AUGUSTUS	CDS	31408888	31409189	0.8	+	2	transcript_id "Ledus.S1G388900.t1"; gene_id "Ledus.S1G388900"
Ledus.S1	AUGUSTUS	exon	31408888	31409189	.	+	.	transcript_id "Ledus.S1G388900.t1"; gene_id "Ledus.S1G388900"
Ledus.S1	AUGUSTUS	stop_codon	31409190	31409192	.	+	0	transcript_id "Ledus.S1G388900.t1"; gene_id "Ledus.S1G388900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1695.t1 is derived from g8556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11941707	11944988	.	-	.	Ledus.S2G157700
Ledus.S2	AUGUSTUS	transcript	11941707	11944988	.	-	.	transcript_id "Ledus.S2G157700.t1"; gene_id "Ledus.S2G157700"
Ledus.S2	AUGUSTUS	stop_codon	11941704	11941706	.	-	0	transcript_id "Ledus.S2G157700.t1"; gene_id "Ledus.S2G157700"
Ledus.S2	AUGUSTUS	CDS	11941707	11943202	0.78	-	2	transcript_id "Ledus.S2G157700.t1"; gene_id "Ledus.S2G157700"
Ledus.S2	AUGUSTUS	exon	11941707	11943202	.	-	.	transcript_id "Ledus.S2G157700.t1"; gene_id "Ledus.S2G157700"
Ledus.S2	AUGUSTUS	intron	11943203	11943327	.	-	.	transcript_id "Ledus.S2G157700.t1"; gene_id "Ledus.S2G157700"
Ledus.S2	AUGUSTUS	CDS	11943328	11943628	1	-	0	transcript_id "Ledus.S2G157700.t1"; gene_id "Ledus.S2G157700"
Ledus.S2	AUGUSTUS	exon	11943328	11943628	.	-	.	transcript_id "Ledus.S2G157700.t1"; gene_id "Ledus.S2G157700"
Ledus.S2	AUGUSTUS	intron	11943629	11943758	.	-	.	transcript_id "Ledus.S2G157700.t1"; gene_id "Ledus.S2G157700"
Ledus.S2	AUGUSTUS	CDS	11943759	11944988	0.99	-	0	transcript_id "Ledus.S2G157700.t1"; gene_id "Ledus.S2G157700"
Ledus.S2	AUGUSTUS	exon	11943759	11944988	.	-	.	transcript_id "Ledus.S2G157700.t1"; gene_id "Ledus.S2G157700"
Ledus.S2	AUGUSTUS	start_codon	11944986	11944988	.	-	0	transcript_id "Ledus.S2G157700.t1"; gene_id "Ledus.S2G157700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12637.t1 is derived from g6259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13555660	13555974	.	-	.	Ledus.S4G179300
Ledus.S4	AUGUSTUS	transcript	13555660	13555974	.	-	.	transcript_id "Ledus.S4G179300.t1"; gene_id "Ledus.S4G179300"
Ledus.S4	AUGUSTUS	stop_codon	13555657	13555659	.	-	0	transcript_id "Ledus.S4G179300.t1"; gene_id "Ledus.S4G179300"
Ledus.S4	AUGUSTUS	CDS	13555660	13555974	0.93	-	0	transcript_id "Ledus.S4G179300.t1"; gene_id "Ledus.S4G179300"
Ledus.S4	AUGUSTUS	exon	13555660	13555974	.	-	.	transcript_id "Ledus.S4G179300.t1"; gene_id "Ledus.S4G179300"
Ledus.S4	AUGUSTUS	start_codon	13555972	13555974	.	-	0	transcript_id "Ledus.S4G179300.t1"; gene_id "Ledus.S4G179300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7132.t1 is derived from g6663.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1705768	1708060	.	+	.	Ledus.C7G019300
Ledus.C7	AUGUSTUS	transcript	1705768	1708060	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	start_codon	1705768	1705770	.	+	0	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	CDS	1705768	1705839	0.99	+	0	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	exon	1705768	1705839	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	intron	1705840	1705943	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	CDS	1705944	1706072	1	+	0	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	exon	1705944	1706072	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	intron	1706073	1706158	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	CDS	1706159	1707051	1	+	0	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	exon	1706159	1707051	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	intron	1707052	1707202	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	CDS	1707203	1707273	1	+	1	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	exon	1707203	1707273	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	intron	1707274	1707459	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	CDS	1707460	1707562	1	+	2	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	exon	1707460	1707562	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	intron	1707563	1707778	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	CDS	1707779	1707854	1	+	1	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	exon	1707779	1707854	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	intron	1707855	1707955	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	CDS	1707956	1708060	0.98	+	0	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	exon	1707956	1708060	.	+	.	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
Ledus.C7	AUGUSTUS	stop_codon	1708061	1708063	.	+	0	transcript_id "Ledus.C7G019300.t1"; gene_id "Ledus.C7G019300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6361.t1 is derived from g3804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30751894	30753055	.	+	.	Ledus.S1G378200
Ledus.S1	AUGUSTUS	transcript	30751894	30753055	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	start_codon	30751894	30751896	.	+	0	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	CDS	30751894	30751944	0.47	+	0	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	exon	30751894	30751944	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	intron	30751945	30752047	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	CDS	30752048	30752070	0.96	+	0	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	exon	30752048	30752070	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	intron	30752071	30752182	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	CDS	30752183	30752288	0.99	+	1	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	exon	30752183	30752288	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	intron	30752289	30752400	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	CDS	30752401	30752471	1	+	0	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	exon	30752401	30752471	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	intron	30752472	30752601	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	CDS	30752602	30752674	1	+	1	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	exon	30752602	30752674	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	intron	30752675	30752802	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	CDS	30752803	30752842	1	+	0	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	exon	30752803	30752842	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	intron	30752843	30752960	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	CDS	30752961	30753055	0.81	+	2	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	exon	30752961	30753055	.	+	.	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
Ledus.S1	AUGUSTUS	stop_codon	30753056	30753058	.	+	0	transcript_id "Ledus.S1G378200.t1"; gene_id "Ledus.S1G378200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5138.t1 is derived from g2577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21906963	21908666	.	+	.	Ledus.S1G255900
Ledus.S1	AUGUSTUS	transcript	21906963	21908666	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	start_codon	21906963	21906965	.	+	0	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	CDS	21906963	21907116	0.96	+	0	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	exon	21906963	21907116	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	intron	21907117	21907321	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	CDS	21907322	21907421	1	+	2	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	exon	21907322	21907421	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	intron	21907422	21907687	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	CDS	21907688	21907803	1	+	1	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	exon	21907688	21907803	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	intron	21907804	21907979	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	CDS	21907980	21908024	1	+	2	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	exon	21907980	21908024	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	intron	21908025	21908219	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	CDS	21908220	21908245	0.74	+	2	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	exon	21908220	21908245	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	intron	21908246	21908349	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	CDS	21908350	21908485	0.81	+	0	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	exon	21908350	21908485	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	intron	21908486	21908589	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	CDS	21908590	21908666	0.99	+	2	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	exon	21908590	21908666	.	+	.	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
Ledus.S1	AUGUSTUS	stop_codon	21908667	21908669	.	+	0	transcript_id "Ledus.S1G255900.t1"; gene_id "Ledus.S1G255900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6708.t1 is derived from g4151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33428433	33434564	.	-	.	Ledus.S1G412900
Ledus.S1	AUGUSTUS	transcript	33428433	33434564	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	stop_codon	33428430	33428432	.	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33428433	33428537	0.73	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33428433	33428537	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33428538	33428929	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33428930	33429043	1	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33428930	33429043	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33429044	33429194	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33429195	33429689	0.62	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33429195	33429689	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33429690	33429906	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33429907	33430366	1	-	1	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33429907	33430366	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33430367	33430509	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33430510	33430628	1	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33430510	33430628	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33430629	33430824	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33430825	33430881	0.93	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33430825	33430881	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33430882	33430957	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33430958	33430972	0.55	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33430958	33430972	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33430973	33431138	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33431139	33431290	0.46	-	2	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33431139	33431290	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33431291	33431607	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33431608	33431668	0.98	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33431608	33431668	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33431669	33431840	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33431841	33432098	0.93	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33431841	33432098	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33432099	33432186	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33432187	33432399	1	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33432187	33432399	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33432400	33432560	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33432561	33433328	0.92	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33432561	33433328	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33433329	33433447	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33433448	33433575	0.85	-	2	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33433448	33433575	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33433576	33433682	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33433683	33433810	0.99	-	1	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33433683	33433810	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33433811	33433903	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33433904	33434288	1	-	2	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33433904	33434288	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	intron	33434289	33434431	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	CDS	33434432	33434564	0.61	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	exon	33434432	33434564	.	-	.	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
Ledus.S1	AUGUSTUS	start_codon	33434562	33434564	.	-	0	transcript_id "Ledus.S1G412900.t1"; gene_id "Ledus.S1G412900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1284.t1 is derived from g8145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9046640	9047227	.	+	.	Ledus.S2G116600
Ledus.S2	AUGUSTUS	transcript	9046640	9047227	.	+	.	transcript_id "Ledus.S2G116600.t1"; gene_id "Ledus.S2G116600"
Ledus.S2	AUGUSTUS	start_codon	9046640	9046642	.	+	0	transcript_id "Ledus.S2G116600.t1"; gene_id "Ledus.S2G116600"
Ledus.S2	AUGUSTUS	CDS	9046640	9047227	0.75	+	0	transcript_id "Ledus.S2G116600.t1"; gene_id "Ledus.S2G116600"
Ledus.S2	AUGUSTUS	exon	9046640	9047227	.	+	.	transcript_id "Ledus.S2G116600.t1"; gene_id "Ledus.S2G116600"
Ledus.S2	AUGUSTUS	stop_codon	9047228	9047230	.	+	0	transcript_id "Ledus.S2G116600.t1"; gene_id "Ledus.S2G116600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2008.t1 is derived from g8871.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14144818	14145281	.	-	.	Ledus.S2G189000
Ledus.S2	AUGUSTUS	transcript	14144818	14145281	.	-	.	transcript_id "Ledus.S2G189000.t1"; gene_id "Ledus.S2G189000"
Ledus.S2	AUGUSTUS	stop_codon	14144815	14144817	.	-	0	transcript_id "Ledus.S2G189000.t1"; gene_id "Ledus.S2G189000"
Ledus.S2	AUGUSTUS	CDS	14144818	14145049	0.48	-	1	transcript_id "Ledus.S2G189000.t1"; gene_id "Ledus.S2G189000"
Ledus.S2	AUGUSTUS	exon	14144818	14145049	.	-	.	transcript_id "Ledus.S2G189000.t1"; gene_id "Ledus.S2G189000"
Ledus.S2	AUGUSTUS	intron	14145050	14145147	.	-	.	transcript_id "Ledus.S2G189000.t1"; gene_id "Ledus.S2G189000"
Ledus.S2	AUGUSTUS	CDS	14145148	14145281	0.3	-	0	transcript_id "Ledus.S2G189000.t1"; gene_id "Ledus.S2G189000"
Ledus.S2	AUGUSTUS	exon	14145148	14145281	.	-	.	transcript_id "Ledus.S2G189000.t1"; gene_id "Ledus.S2G189000"
Ledus.S2	AUGUSTUS	start_codon	14145279	14145281	.	-	0	transcript_id "Ledus.S2G189000.t1"; gene_id "Ledus.S2G189000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10536.t1 is derived from g11566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16001905	16009717	.	-	.	Ledus.S3G201300
Ledus.S3	AUGUSTUS	transcript	16001905	16009717	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	stop_codon	16001902	16001904	.	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16001905	16001987	1	-	2	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16001905	16001987	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16001988	16002085	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16002086	16002252	1	-	1	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16002086	16002252	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16002253	16002361	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16002362	16003155	1	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16002362	16003155	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16003156	16003285	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16003286	16003507	1	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16003286	16003507	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16003508	16003616	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16003617	16003780	1	-	2	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16003617	16003780	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16003781	16003901	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16003902	16004155	1	-	1	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16003902	16004155	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16004156	16004250	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16004251	16004444	0.69	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16004251	16004444	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16004445	16004585	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16004586	16004726	0.56	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16004586	16004726	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16004727	16004834	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16004835	16004941	0.82	-	2	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16004835	16004941	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16004942	16005020	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16005021	16005200	0.92	-	2	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16005021	16005200	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16005201	16005320	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16005321	16005416	0.96	-	2	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16005321	16005416	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16005417	16005528	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16005529	16005610	1	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16005529	16005610	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16005611	16005812	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16005813	16006154	1	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16005813	16006154	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16006155	16006784	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16006785	16006814	1	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16006785	16006814	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16006815	16006937	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16006938	16007039	1	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16006938	16007039	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16007040	16007148	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16007149	16007226	0.96	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16007149	16007226	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16007227	16007372	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16007373	16007447	1	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16007373	16007447	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16007448	16007607	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16007608	16007738	1	-	2	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16007608	16007738	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16007739	16007932	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16007933	16008362	0.69	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16007933	16008362	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16008363	16008450	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16008451	16008588	1	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16008451	16008588	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16008589	16008919	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16008920	16009077	0.99	-	2	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16008920	16009077	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16009078	16009197	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16009198	16009383	1	-	2	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16009198	16009383	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16009384	16009473	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16009474	16009495	1	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16009474	16009495	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	intron	16009496	16009585	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	CDS	16009586	16009717	0.93	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	exon	16009586	16009717	.	-	.	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
Ledus.S3	AUGUSTUS	start_codon	16009715	16009717	.	-	0	transcript_id "Ledus.S3G201300.t1"; gene_id "Ledus.S3G201300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7383.t1 is derived from g12054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1952328	1952665	.	+	.	Ledus.S5G016100
Ledus.S5	AUGUSTUS	transcript	1952328	1952665	.	+	.	transcript_id "Ledus.S5G016100.t1"; gene_id "Ledus.S5G016100"
Ledus.S5	AUGUSTUS	start_codon	1952328	1952330	.	+	0	transcript_id "Ledus.S5G016100.t1"; gene_id "Ledus.S5G016100"
Ledus.S5	AUGUSTUS	CDS	1952328	1952480	0.28	+	0	transcript_id "Ledus.S5G016100.t1"; gene_id "Ledus.S5G016100"
Ledus.S5	AUGUSTUS	exon	1952328	1952480	.	+	.	transcript_id "Ledus.S5G016100.t1"; gene_id "Ledus.S5G016100"
Ledus.S5	AUGUSTUS	intron	1952481	1952569	.	+	.	transcript_id "Ledus.S5G016100.t1"; gene_id "Ledus.S5G016100"
Ledus.S5	AUGUSTUS	CDS	1952570	1952665	0.66	+	0	transcript_id "Ledus.S5G016100.t1"; gene_id "Ledus.S5G016100"
Ledus.S5	AUGUSTUS	exon	1952570	1952665	.	+	.	transcript_id "Ledus.S5G016100.t1"; gene_id "Ledus.S5G016100"
Ledus.S5	AUGUSTUS	stop_codon	1952666	1952668	.	+	0	transcript_id "Ledus.S5G016100.t1"; gene_id "Ledus.S5G016100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4790.t1 is derived from g2228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19786490	19790610	.	-	.	Ledus.S1G221100
Ledus.S1	AUGUSTUS	transcript	19786490	19790610	.	-	.	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	stop_codon	19786487	19786489	.	-	0	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	CDS	19786490	19786568	0.53	-	1	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	exon	19786490	19786568	.	-	.	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	intron	19786569	19786759	.	-	.	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	CDS	19786760	19786857	0.98	-	0	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	exon	19786760	19786857	.	-	.	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	intron	19786858	19787045	.	-	.	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	CDS	19787046	19790414	0.37	-	0	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	exon	19787046	19790414	.	-	.	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	intron	19790415	19790526	.	-	.	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	CDS	19790527	19790610	0.35	-	0	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	exon	19790527	19790610	.	-	.	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
Ledus.S1	AUGUSTUS	start_codon	19790608	19790610	.	-	0	transcript_id "Ledus.S1G221100.t1"; gene_id "Ledus.S1G221100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4285.t1 is derived from g1721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16055889	16065911	.	+	.	Ledus.S1G170600
Ledus.S1	AUGUSTUS	transcript	16055889	16065911	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	start_codon	16055889	16055891	.	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16055889	16055912	0.96	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16055889	16055912	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16055913	16055990	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16055991	16056499	0.95	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16055991	16056499	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16056500	16056606	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16056607	16058326	0.94	+	1	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16056607	16058326	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16058327	16058429	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16058430	16058494	1	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16058430	16058494	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16058495	16058637	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16058638	16058743	1	+	1	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16058638	16058743	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16058744	16058897	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16058898	16059098	0.7	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16058898	16059098	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16059099	16059219	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16059220	16059414	0.7	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16059220	16059414	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16059415	16059579	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16059580	16059741	1	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16059580	16059741	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16059742	16059812	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16059813	16060043	1	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16059813	16060043	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16060044	16060140	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16060141	16060353	1	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16060141	16060353	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16060354	16060550	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16060551	16060901	1	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16060551	16060901	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16060902	16061048	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16061049	16061201	0.78	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16061049	16061201	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16061202	16061302	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16061303	16061554	1	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16061303	16061554	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16061555	16061836	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16061837	16062055	0.9	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16061837	16062055	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16062056	16062246	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16062247	16062364	0.99	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16062247	16062364	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16062365	16062483	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16062484	16063595	0.99	+	2	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16062484	16063595	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16063596	16063701	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16063702	16063899	0.92	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16063702	16063899	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16063900	16063983	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16063984	16064243	1	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16063984	16064243	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16064244	16064384	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16064385	16064592	0.73	+	1	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16064385	16064592	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16064593	16064697	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16064698	16064817	0.73	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16064698	16064817	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16064818	16064905	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16064906	16065258	0.52	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16064906	16065258	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16065259	16065363	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16065364	16065472	0.95	+	1	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16065364	16065472	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16065473	16065558	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16065559	16065714	1	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16065559	16065714	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	intron	16065715	16065794	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	CDS	16065795	16065911	0.91	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	exon	16065795	16065911	.	+	.	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
Ledus.S1	AUGUSTUS	stop_codon	16065912	16065914	.	+	0	transcript_id "Ledus.S1G170600.t1"; gene_id "Ledus.S1G170600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6514.t1 is derived from g3957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31816867	31821137	.	+	.	Ledus.S1G393500
Ledus.S1	AUGUSTUS	transcript	31816867	31821137	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	start_codon	31816867	31816869	.	+	0	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31816867	31817388	0.52	+	0	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31816867	31817388	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31817389	31817474	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31817475	31818031	1	+	0	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31817475	31818031	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31818032	31818101	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31818102	31818355	1	+	1	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31818102	31818355	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31818356	31818448	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31818449	31818563	1	+	2	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31818449	31818563	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31818564	31818651	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31818652	31818723	1	+	1	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31818652	31818723	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31818724	31818806	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31818807	31818878	1	+	1	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31818807	31818878	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31818879	31818965	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31818966	31819034	1	+	1	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31818966	31819034	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31819035	31819120	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31819121	31819377	1	+	1	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31819121	31819377	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31819378	31819462	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31819463	31819677	1	+	2	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31819463	31819677	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31819678	31819758	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31819759	31819885	1	+	0	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31819759	31819885	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31819886	31819967	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31819968	31820036	1	+	2	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31819968	31820036	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31820037	31820117	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31820118	31820286	1	+	2	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31820118	31820286	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31820287	31820362	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31820363	31820492	1	+	1	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31820363	31820492	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31820493	31820578	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31820579	31820728	0.97	+	0	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31820579	31820728	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	intron	31820729	31820846	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	CDS	31820847	31821137	1	+	0	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	exon	31820847	31821137	.	+	.	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
Ledus.S1	AUGUSTUS	stop_codon	31821138	31821140	.	+	0	transcript_id "Ledus.S1G393500.t1"; gene_id "Ledus.S1G393500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3203.t1 is derived from g638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6804543	6805538	.	-	.	Ledus.S1G062400
Ledus.S1	AUGUSTUS	transcript	6804543	6805538	.	-	.	transcript_id "Ledus.S1G062400.t1"; gene_id "Ledus.S1G062400"
Ledus.S1	AUGUSTUS	stop_codon	6804540	6804542	.	-	0	transcript_id "Ledus.S1G062400.t1"; gene_id "Ledus.S1G062400"
Ledus.S1	AUGUSTUS	CDS	6804543	6805538	1	-	0	transcript_id "Ledus.S1G062400.t1"; gene_id "Ledus.S1G062400"
Ledus.S1	AUGUSTUS	exon	6804543	6805538	.	-	.	transcript_id "Ledus.S1G062400.t1"; gene_id "Ledus.S1G062400"
Ledus.S1	AUGUSTUS	start_codon	6805536	6805538	.	-	0	transcript_id "Ledus.S1G062400.t1"; gene_id "Ledus.S1G062400"
# This transcript jg1826.t2 is derived from g8689.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1827.t1 is derived from g8690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12823736	12824711	.	-	.	Ledus.S2G170900
Ledus.S2	AUGUSTUS	transcript	12823736	12824711	.	-	.	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	stop_codon	12823733	12823735	.	-	0	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	CDS	12823736	12823953	0.84	-	2	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	exon	12823736	12823953	.	-	.	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	intron	12823954	12824060	.	-	.	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	CDS	12824061	12824259	0.6	-	0	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	exon	12824061	12824259	.	-	.	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	intron	12824260	12824345	.	-	.	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	CDS	12824346	12824501	1	-	0	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	exon	12824346	12824501	.	-	.	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	intron	12824502	12824606	.	-	.	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	CDS	12824607	12824711	0.73	-	0	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	exon	12824607	12824711	.	-	.	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
Ledus.S2	AUGUSTUS	start_codon	12824709	12824711	.	-	0	transcript_id "Ledus.S2G170900.t1"; gene_id "Ledus.S2G170900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1368.t1 is derived from g8229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9485312	9485833	.	+	.	Ledus.S2G125000
Ledus.S2	AUGUSTUS	transcript	9485312	9485833	.	+	.	transcript_id "Ledus.S2G125000.t1"; gene_id "Ledus.S2G125000"
Ledus.S2	AUGUSTUS	start_codon	9485312	9485314	.	+	0	transcript_id "Ledus.S2G125000.t1"; gene_id "Ledus.S2G125000"
Ledus.S2	AUGUSTUS	CDS	9485312	9485833	0.56	+	0	transcript_id "Ledus.S2G125000.t1"; gene_id "Ledus.S2G125000"
Ledus.S2	AUGUSTUS	exon	9485312	9485833	.	+	.	transcript_id "Ledus.S2G125000.t1"; gene_id "Ledus.S2G125000"
Ledus.S2	AUGUSTUS	stop_codon	9485834	9485836	.	+	0	transcript_id "Ledus.S2G125000.t1"; gene_id "Ledus.S2G125000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4911.t1 is derived from g2349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20603080	20603406	.	-	.	Ledus.S1G233200
Ledus.S1	AUGUSTUS	transcript	20603080	20603406	.	-	.	transcript_id "Ledus.S1G233200.t1"; gene_id "Ledus.S1G233200"
Ledus.S1	AUGUSTUS	stop_codon	20603077	20603079	.	-	0	transcript_id "Ledus.S1G233200.t1"; gene_id "Ledus.S1G233200"
Ledus.S1	AUGUSTUS	CDS	20603080	20603406	0.82	-	0	transcript_id "Ledus.S1G233200.t1"; gene_id "Ledus.S1G233200"
Ledus.S1	AUGUSTUS	exon	20603080	20603406	.	-	.	transcript_id "Ledus.S1G233200.t1"; gene_id "Ledus.S1G233200"
Ledus.S1	AUGUSTUS	start_codon	20603404	20603406	.	-	0	transcript_id "Ledus.S1G233200.t1"; gene_id "Ledus.S1G233200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6409.t1 is derived from g3852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31115431	31118496	.	+	.	Ledus.S1G383000
Ledus.S1	AUGUSTUS	transcript	31115431	31118496	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	start_codon	31115431	31115433	.	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31115431	31115715	0.41	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31115431	31115715	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31115716	31115798	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31115799	31115864	1	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31115799	31115864	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31115865	31115986	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31115987	31116061	1	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31115987	31116061	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31116062	31116145	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31116146	31116208	1	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31116146	31116208	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31116209	31116288	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31116289	31116348	1	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31116289	31116348	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31116349	31116443	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31116444	31116533	1	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31116444	31116533	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31116534	31116627	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31116628	31116735	1	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31116628	31116735	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31116736	31116820	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31116821	31116943	1	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31116821	31116943	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31116944	31117034	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31117035	31117159	1	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31117035	31117159	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31117160	31117278	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31117279	31117315	0.88	+	1	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31117279	31117315	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31117316	31117430	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31117431	31117497	0.89	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31117431	31117497	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31117498	31117581	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31117582	31117680	1	+	2	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31117582	31117680	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31117681	31117758	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31117759	31117914	1	+	2	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31117759	31117914	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31117915	31117989	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31117990	31118219	0.98	+	2	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31117990	31118219	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	intron	31118220	31118322	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	CDS	31118323	31118496	1	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	exon	31118323	31118496	.	+	.	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
Ledus.S1	AUGUSTUS	stop_codon	31118497	31118499	.	+	0	transcript_id "Ledus.S1G383000.t1"; gene_id "Ledus.S1G383000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11439.t1 is derived from g5057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4328465	4328905	.	-	.	Ledus.S4G059500
Ledus.S4	AUGUSTUS	transcript	4328465	4328905	.	-	.	transcript_id "Ledus.S4G059500.t1"; gene_id "Ledus.S4G059500"
Ledus.S4	AUGUSTUS	stop_codon	4328462	4328464	.	-	0	transcript_id "Ledus.S4G059500.t1"; gene_id "Ledus.S4G059500"
Ledus.S4	AUGUSTUS	CDS	4328465	4328905	0.99	-	0	transcript_id "Ledus.S4G059500.t1"; gene_id "Ledus.S4G059500"
Ledus.S4	AUGUSTUS	exon	4328465	4328905	.	-	.	transcript_id "Ledus.S4G059500.t1"; gene_id "Ledus.S4G059500"
Ledus.S4	AUGUSTUS	start_codon	4328903	4328905	.	-	0	transcript_id "Ledus.S4G059500.t1"; gene_id "Ledus.S4G059500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7865.t1 is derived from g12536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7531230	7532720	.	+	.	Ledus.S5G064300
Ledus.S5	AUGUSTUS	transcript	7531230	7532720	.	+	.	transcript_id "Ledus.S5G064300.t1"; gene_id "Ledus.S5G064300"
Ledus.S5	AUGUSTUS	start_codon	7531230	7531232	.	+	0	transcript_id "Ledus.S5G064300.t1"; gene_id "Ledus.S5G064300"
Ledus.S5	AUGUSTUS	CDS	7531230	7531532	0.89	+	0	transcript_id "Ledus.S5G064300.t1"; gene_id "Ledus.S5G064300"
Ledus.S5	AUGUSTUS	exon	7531230	7531532	.	+	.	transcript_id "Ledus.S5G064300.t1"; gene_id "Ledus.S5G064300"
Ledus.S5	AUGUSTUS	intron	7531533	7531625	.	+	.	transcript_id "Ledus.S5G064300.t1"; gene_id "Ledus.S5G064300"
Ledus.S5	AUGUSTUS	CDS	7531626	7532720	0.9	+	0	transcript_id "Ledus.S5G064300.t1"; gene_id "Ledus.S5G064300"
Ledus.S5	AUGUSTUS	exon	7531626	7532720	.	+	.	transcript_id "Ledus.S5G064300.t1"; gene_id "Ledus.S5G064300"
Ledus.S5	AUGUSTUS	stop_codon	7532721	7532723	.	+	0	transcript_id "Ledus.S5G064300.t1"; gene_id "Ledus.S5G064300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8302.t1 is derived from g12974.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10599141	10605791	.	+	.	Ledus.S5G108000
Ledus.S5	AUGUSTUS	transcript	10599141	10605791	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	start_codon	10599141	10599143	.	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10599141	10599623	0.37	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10599141	10599623	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10599624	10599703	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10599704	10599845	0.33	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10599704	10599845	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10599846	10599986	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10599987	10600338	1	+	2	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10599987	10600338	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10600339	10600551	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10600552	10601635	0.83	+	1	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10600552	10601635	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10601636	10601834	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10601835	10601924	0.86	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10601835	10601924	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10601925	10602049	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10602050	10602286	0.99	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10602050	10602286	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10602287	10602457	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10602458	10602536	0.56	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10602458	10602536	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10602537	10602606	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10602607	10602701	0.31	+	2	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10602607	10602701	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10602702	10602796	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10602797	10602919	1	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10602797	10602919	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10602920	10602993	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10602994	10603002	0.79	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10602994	10603002	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10603003	10603061	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10603062	10603171	0.97	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10603062	10603171	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10603172	10603303	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10603304	10603461	1	+	1	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10603304	10603461	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10603462	10603558	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10603559	10603656	1	+	2	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10603559	10603656	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10603657	10603818	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10603819	10603872	1	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10603819	10603872	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10603873	10603963	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10603964	10604020	1	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10603964	10604020	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10604021	10604103	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10604104	10604355	1	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10604104	10604355	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10604356	10604461	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10604462	10604605	1	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10604462	10604605	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10604606	10604701	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10604702	10604853	1	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10604702	10604853	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10604854	10604955	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10604956	10605064	1	+	1	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10604956	10605064	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10605065	10605161	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10605162	10605245	1	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10605162	10605245	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10605246	10605325	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10605326	10605469	0.66	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10605326	10605469	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	intron	10605470	10605746	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	CDS	10605747	10605791	0.66	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	exon	10605747	10605791	.	+	.	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
Ledus.S5	AUGUSTUS	stop_codon	10605792	10605794	.	+	0	transcript_id "Ledus.S5G108000.t1"; gene_id "Ledus.S5G108000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9744.t1 is derived from g10774.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9542843	9543289	.	-	.	Ledus.S3G122100
Ledus.S3	AUGUSTUS	transcript	9542843	9543289	.	-	.	transcript_id "Ledus.S3G122100.t1"; gene_id "Ledus.S3G122100"
Ledus.S3	AUGUSTUS	stop_codon	9542840	9542842	.	-	0	transcript_id "Ledus.S3G122100.t1"; gene_id "Ledus.S3G122100"
Ledus.S3	AUGUSTUS	CDS	9542843	9543289	0.55	-	0	transcript_id "Ledus.S3G122100.t1"; gene_id "Ledus.S3G122100"
Ledus.S3	AUGUSTUS	exon	9542843	9543289	.	-	.	transcript_id "Ledus.S3G122100.t1"; gene_id "Ledus.S3G122100"
Ledus.S3	AUGUSTUS	start_codon	9543287	9543289	.	-	0	transcript_id "Ledus.S3G122100.t1"; gene_id "Ledus.S3G122100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4031.t1 is derived from g1467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14263679	14265458	.	+	.	Ledus.S1G145200
Ledus.S1	AUGUSTUS	transcript	14263679	14265458	.	+	.	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	start_codon	14263679	14263681	.	+	0	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	CDS	14263679	14263826	0.68	+	0	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	exon	14263679	14263826	.	+	.	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	intron	14263827	14264041	.	+	.	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	CDS	14264042	14264142	0.72	+	2	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	exon	14264042	14264142	.	+	.	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	intron	14264143	14264247	.	+	.	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	CDS	14264248	14264413	0.99	+	0	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	exon	14264248	14264413	.	+	.	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	intron	14264414	14264628	.	+	.	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	CDS	14264629	14264841	1	+	2	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	exon	14264629	14264841	.	+	.	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	intron	14264842	14264931	.	+	.	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	CDS	14264932	14265458	0.9	+	2	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	exon	14264932	14265458	.	+	.	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
Ledus.S1	AUGUSTUS	stop_codon	14265459	14265461	.	+	0	transcript_id "Ledus.S1G145200.t1"; gene_id "Ledus.S1G145200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5434.t1 is derived from g2873.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24139827	24141950	.	+	.	Ledus.S1G285500
Ledus.S1	AUGUSTUS	transcript	24139827	24141950	.	+	.	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	start_codon	24139827	24139829	.	+	0	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	CDS	24139827	24139973	0.64	+	0	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	exon	24139827	24139973	.	+	.	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	intron	24139974	24140060	.	+	.	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	CDS	24140061	24140399	1	+	0	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	exon	24140061	24140399	.	+	.	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	intron	24140400	24140768	.	+	.	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	CDS	24140769	24140829	1	+	0	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	exon	24140769	24140829	.	+	.	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	intron	24140830	24140916	.	+	.	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	CDS	24140917	24141950	0.51	+	2	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	exon	24140917	24141950	.	+	.	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	stop_codon	24141951	24141953	.	+	0	transcript_id "Ledus.S1G285500.t1"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	transcript	24139827	24141950	.	+	.	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	start_codon	24139827	24139829	.	+	0	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	CDS	24139827	24139973	0.58	+	0	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	exon	24139827	24139973	.	+	.	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	intron	24139974	24140060	.	+	.	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	CDS	24140061	24140399	0.98	+	0	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	exon	24140061	24140399	.	+	.	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	intron	24140400	24140642	.	+	.	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	CDS	24140643	24140700	0.38	+	0	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	exon	24140643	24140700	.	+	.	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	intron	24140701	24140763	.	+	.	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	CDS	24140764	24140829	0.72	+	2	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	exon	24140764	24140829	.	+	.	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	intron	24140830	24140916	.	+	.	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	CDS	24140917	24141950	0.48	+	2	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	exon	24140917	24141950	.	+	.	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
Ledus.S1	AUGUSTUS	stop_codon	24141951	24141953	.	+	0	transcript_id "Ledus.S1G285500.t2"; gene_id "Ledus.S1G285500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9270.t1 is derived from g10300.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5728602	5729546	.	-	.	Ledus.S3G074700
Ledus.S3	AUGUSTUS	transcript	5729131	5729546	.	-	.	transcript_id "Ledus.S3G074700.t1"; gene_id "Ledus.S3G074700"
Ledus.S3	AUGUSTUS	stop_codon	5729128	5729130	.	-	0	transcript_id "Ledus.S3G074700.t1"; gene_id "Ledus.S3G074700"
Ledus.S3	AUGUSTUS	CDS	5729131	5729158	0.73	-	1	transcript_id "Ledus.S3G074700.t1"; gene_id "Ledus.S3G074700"
Ledus.S3	AUGUSTUS	exon	5729131	5729158	.	-	.	transcript_id "Ledus.S3G074700.t1"; gene_id "Ledus.S3G074700"
Ledus.S3	AUGUSTUS	intron	5729159	5729217	.	-	.	transcript_id "Ledus.S3G074700.t1"; gene_id "Ledus.S3G074700"
Ledus.S3	AUGUSTUS	CDS	5729218	5729546	0.81	-	0	transcript_id "Ledus.S3G074700.t1"; gene_id "Ledus.S3G074700"
Ledus.S3	AUGUSTUS	exon	5729218	5729546	.	-	.	transcript_id "Ledus.S3G074700.t1"; gene_id "Ledus.S3G074700"
Ledus.S3	AUGUSTUS	start_codon	5729544	5729546	.	-	0	transcript_id "Ledus.S3G074700.t1"; gene_id "Ledus.S3G074700"
Ledus.S3	AUGUSTUS	transcript	5728602	5729546	.	-	.	transcript_id "Ledus.S3G074700.t2"; gene_id "Ledus.S3G074700"
Ledus.S3	AUGUSTUS	stop_codon	5728599	5728601	.	-	0	transcript_id "Ledus.S3G074700.t2"; gene_id "Ledus.S3G074700"
Ledus.S3	AUGUSTUS	CDS	5728602	5729546	1	-	0	transcript_id "Ledus.S3G074700.t2"; gene_id "Ledus.S3G074700"
Ledus.S3	AUGUSTUS	exon	5728602	5729546	.	-	.	transcript_id "Ledus.S3G074700.t2"; gene_id "Ledus.S3G074700"
Ledus.S3	AUGUSTUS	start_codon	5729544	5729546	.	-	0	transcript_id "Ledus.S3G074700.t2"; gene_id "Ledus.S3G074700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13173.t1 is derived from g9447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C41	AUGUSTUS	gene	11921	14348	.	-	.	Ledus.C41G000400
Ledus.C41	AUGUSTUS	transcript	11921	14348	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	stop_codon	11918	11920	.	-	0	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	CDS	11921	12073	0.99	-	0	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	exon	11921	12073	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	intron	12074	12207	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	CDS	12208	12324	1	-	0	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	exon	12208	12324	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	intron	12325	12428	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	CDS	12429	12608	1	-	0	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	exon	12429	12608	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	intron	12609	12778	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	CDS	12779	12907	1	-	0	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	exon	12779	12907	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	intron	12908	13050	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	CDS	13051	13149	1	-	0	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	exon	13051	13149	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	intron	13150	13243	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	CDS	13244	13387	1	-	0	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	exon	13244	13387	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	intron	13388	13482	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	CDS	13483	13587	0.91	-	0	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	exon	13483	13587	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	intron	13588	13700	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	CDS	13701	13793	1	-	0	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	exon	13701	13793	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	intron	13794	13886	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	CDS	13887	14348	0.87	-	0	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	exon	13887	14348	.	-	.	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
Ledus.C41	AUGUSTUS	start_codon	14346	14348	.	-	0	transcript_id "Ledus.C41G000400.t1"; gene_id "Ledus.C41G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12487.t1 is derived from g6108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12338112	12343852	.	+	.	Ledus.S4G164300
Ledus.S4	AUGUSTUS	transcript	12338112	12343852	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	start_codon	12338112	12338114	.	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12338112	12338434	0.98	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12338112	12338434	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12338435	12338551	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12338552	12338623	1	+	1	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12338552	12338623	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12338624	12338837	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12338838	12338902	1	+	1	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12338838	12338902	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12338903	12339225	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12339226	12339930	0.88	+	2	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12339226	12339930	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12339931	12340034	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12340035	12340207	0.98	+	2	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12340035	12340207	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12340208	12340402	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12340403	12340492	0.99	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12340403	12340492	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12340493	12340603	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12340604	12340679	1	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12340604	12340679	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12340680	12340774	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12340775	12340882	1	+	2	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12340775	12340882	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12340883	12341025	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12341026	12341116	1	+	2	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12341026	12341116	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12341117	12341243	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12341244	12341345	1	+	1	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12341244	12341345	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12341346	12341454	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12341455	12341557	1	+	1	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12341455	12341557	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12341558	12341747	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12341748	12341885	1	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12341748	12341885	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12341886	12342151	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12342152	12342220	1	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12342152	12342220	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12342221	12342373	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12342374	12342475	1	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12342374	12342475	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12342476	12342576	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12342577	12342654	0.95	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12342577	12342654	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12342655	12342771	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12342772	12342882	1	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12342772	12342882	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12342883	12343039	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12343040	12343120	1	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12343040	12343120	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12343121	12343261	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12343262	12343366	1	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12343262	12343366	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12343367	12343475	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12343476	12343561	1	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12343476	12343561	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12343562	12343650	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12343651	12343705	1	+	1	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12343651	12343705	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	intron	12343706	12343795	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	CDS	12343796	12343852	1	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	exon	12343796	12343852	.	+	.	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
Ledus.S4	AUGUSTUS	stop_codon	12343853	12343855	.	+	0	transcript_id "Ledus.S4G164300.t1"; gene_id "Ledus.S4G164300"
# This transcript jg4373.t2 is derived from g1809.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4373.t3 is derived from g1809.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4374.t1 is derived from g1810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16693619	16695463	.	+	.	Ledus.S1G179500
Ledus.S1	AUGUSTUS	transcript	16693619	16695463	.	+	.	transcript_id "Ledus.S1G179500.t1"; gene_id "Ledus.S1G179500"
Ledus.S1	AUGUSTUS	start_codon	16693619	16693621	.	+	0	transcript_id "Ledus.S1G179500.t1"; gene_id "Ledus.S1G179500"
Ledus.S1	AUGUSTUS	CDS	16693619	16695463	0.58	+	0	transcript_id "Ledus.S1G179500.t1"; gene_id "Ledus.S1G179500"
Ledus.S1	AUGUSTUS	exon	16693619	16695463	.	+	.	transcript_id "Ledus.S1G179500.t1"; gene_id "Ledus.S1G179500"
Ledus.S1	AUGUSTUS	stop_codon	16695464	16695466	.	+	0	transcript_id "Ledus.S1G179500.t1"; gene_id "Ledus.S1G179500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8729.t1 is derived from g9759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1619322	1620080	.	-	.	Ledus.S3G020600
Ledus.S3	AUGUSTUS	transcript	1619322	1620080	.	-	.	transcript_id "Ledus.S3G020600.t1"; gene_id "Ledus.S3G020600"
Ledus.S3	AUGUSTUS	stop_codon	1619319	1619321	.	-	0	transcript_id "Ledus.S3G020600.t1"; gene_id "Ledus.S3G020600"
Ledus.S3	AUGUSTUS	CDS	1619322	1620080	1	-	0	transcript_id "Ledus.S3G020600.t1"; gene_id "Ledus.S3G020600"
Ledus.S3	AUGUSTUS	exon	1619322	1620080	.	-	.	transcript_id "Ledus.S3G020600.t1"; gene_id "Ledus.S3G020600"
Ledus.S3	AUGUSTUS	start_codon	1620078	1620080	.	-	0	transcript_id "Ledus.S3G020600.t1"; gene_id "Ledus.S3G020600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10498.t1 is derived from g11528.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15630900	15638418	.	-	.	Ledus.S3G197500
Ledus.S3	AUGUSTUS	transcript	15630900	15638418	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	stop_codon	15630897	15630899	.	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15630900	15630939	1	-	1	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15630900	15630939	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15630940	15631020	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15631021	15631149	1	-	1	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15631021	15631149	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15631150	15631251	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15631252	15631385	0.7	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15631252	15631385	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15631386	15631514	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15631515	15631577	1	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15631515	15631577	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15631578	15631730	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15631731	15631881	1	-	1	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15631731	15631881	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15631882	15631981	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15631982	15632034	1	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15631982	15632034	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15632035	15632165	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15632166	15632291	1	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15632166	15632291	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15632292	15632434	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15632435	15632759	0.98	-	1	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15632435	15632759	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15632760	15632926	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15632927	15633096	1	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15632927	15633096	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15633097	15633299	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15633300	15633501	1	-	1	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15633300	15633501	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15633502	15633638	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15633639	15633847	1	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15633639	15633847	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15633848	15634028	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15634029	15634238	1	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15634029	15634238	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15634239	15634413	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15634414	15634543	0.92	-	1	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15634414	15634543	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15634544	15634655	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15634656	15634770	0.93	-	2	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15634656	15634770	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15634771	15634890	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15634891	15635018	0.99	-	1	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15634891	15635018	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15635019	15635202	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15635203	15635295	0.88	-	1	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15635203	15635295	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15635296	15635396	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15635397	15635608	0.94	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15635397	15635608	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15635609	15635858	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15635859	15635966	1	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15635859	15635966	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15635967	15636066	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15636067	15636171	1	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15636067	15636171	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15636172	15636259	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15636260	15636430	1	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15636260	15636430	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15636431	15636516	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15636517	15636695	1	-	2	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15636517	15636695	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15636696	15636837	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15636838	15637066	1	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15636838	15637066	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15637067	15637164	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15637165	15637279	1	-	1	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15637165	15637279	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15637280	15637441	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15637442	15637617	1	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15637442	15637617	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15637618	15637743	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15637744	15637911	0.96	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15637744	15637911	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15637912	15638025	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15638026	15638112	1	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15638026	15638112	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	intron	15638113	15638295	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	CDS	15638296	15638418	0.93	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	exon	15638296	15638418	.	-	.	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
Ledus.S3	AUGUSTUS	start_codon	15638416	15638418	.	-	0	transcript_id "Ledus.S3G197500.t1"; gene_id "Ledus.S3G197500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4634.t1 is derived from g2071.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18555565	18556290	.	-	.	Ledus.S1G205500
Ledus.S1	AUGUSTUS	transcript	18555565	18556290	.	-	.	transcript_id "Ledus.S1G205500.t1"; gene_id "Ledus.S1G205500"
Ledus.S1	AUGUSTUS	stop_codon	18555562	18555564	.	-	0	transcript_id "Ledus.S1G205500.t1"; gene_id "Ledus.S1G205500"
Ledus.S1	AUGUSTUS	CDS	18555565	18555654	0.91	-	0	transcript_id "Ledus.S1G205500.t1"; gene_id "Ledus.S1G205500"
Ledus.S1	AUGUSTUS	exon	18555565	18555654	.	-	.	transcript_id "Ledus.S1G205500.t1"; gene_id "Ledus.S1G205500"
Ledus.S1	AUGUSTUS	intron	18555655	18556044	.	-	.	transcript_id "Ledus.S1G205500.t1"; gene_id "Ledus.S1G205500"
Ledus.S1	AUGUSTUS	CDS	18556045	18556290	0.86	-	0	transcript_id "Ledus.S1G205500.t1"; gene_id "Ledus.S1G205500"
Ledus.S1	AUGUSTUS	exon	18556045	18556290	.	-	.	transcript_id "Ledus.S1G205500.t1"; gene_id "Ledus.S1G205500"
Ledus.S1	AUGUSTUS	start_codon	18556288	18556290	.	-	0	transcript_id "Ledus.S1G205500.t1"; gene_id "Ledus.S1G205500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6752.t1 is derived from g4195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33769376	33770530	.	+	.	Ledus.S1G417300
Ledus.S1	AUGUSTUS	transcript	33769376	33770530	.	+	.	transcript_id "Ledus.S1G417300.t1"; gene_id "Ledus.S1G417300"
Ledus.S1	AUGUSTUS	start_codon	33769376	33769378	.	+	0	transcript_id "Ledus.S1G417300.t1"; gene_id "Ledus.S1G417300"
Ledus.S1	AUGUSTUS	CDS	33769376	33769672	1	+	0	transcript_id "Ledus.S1G417300.t1"; gene_id "Ledus.S1G417300"
Ledus.S1	AUGUSTUS	exon	33769376	33769672	.	+	.	transcript_id "Ledus.S1G417300.t1"; gene_id "Ledus.S1G417300"
Ledus.S1	AUGUSTUS	intron	33769673	33770458	.	+	.	transcript_id "Ledus.S1G417300.t1"; gene_id "Ledus.S1G417300"
Ledus.S1	AUGUSTUS	CDS	33770459	33770530	1	+	0	transcript_id "Ledus.S1G417300.t1"; gene_id "Ledus.S1G417300"
Ledus.S1	AUGUSTUS	exon	33770459	33770530	.	+	.	transcript_id "Ledus.S1G417300.t1"; gene_id "Ledus.S1G417300"
Ledus.S1	AUGUSTUS	stop_codon	33770531	33770533	.	+	0	transcript_id "Ledus.S1G417300.t1"; gene_id "Ledus.S1G417300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg582.t1 is derived from g7443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3447873	3448734	.	+	.	Ledus.S2G046400
Ledus.S2	AUGUSTUS	transcript	3447873	3448734	.	+	.	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	start_codon	3447873	3447875	.	+	0	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	CDS	3447873	3447940	0.62	+	0	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	exon	3447873	3447940	.	+	.	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	intron	3447941	3448052	.	+	.	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	CDS	3448053	3448240	0.95	+	1	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	exon	3448053	3448240	.	+	.	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	intron	3448241	3448310	.	+	.	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	CDS	3448311	3448487	0.97	+	2	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	exon	3448311	3448487	.	+	.	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	intron	3448488	3448639	.	+	.	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	CDS	3448640	3448734	0.94	+	2	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	exon	3448640	3448734	.	+	.	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
Ledus.S2	AUGUSTUS	stop_codon	3448735	3448737	.	+	0	transcript_id "Ledus.S2G046400.t1"; gene_id "Ledus.S2G046400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6232.t1 is derived from g3675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29773230	29780872	.	-	.	Ledus.S1G365300
Ledus.S1	AUGUSTUS	transcript	29773230	29780872	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	stop_codon	29773227	29773229	.	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29773230	29773298	1	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29773230	29773298	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29773299	29773386	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29773387	29773503	1	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29773387	29773503	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29773504	29773590	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29773591	29773723	1	-	1	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29773591	29773723	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29773724	29773802	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29773803	29773879	0.97	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29773803	29773879	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29773880	29773984	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29773985	29774160	0.97	-	2	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29773985	29774160	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29774161	29774256	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29774257	29774338	1	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29774257	29774338	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29774339	29774444	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29774445	29774508	0.99	-	1	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29774445	29774508	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29774509	29774622	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29774623	29774718	1	-	1	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29774623	29774718	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29774719	29774810	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29774811	29774968	1	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29774811	29774968	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29774969	29775060	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29775061	29775160	1	-	1	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29775061	29775160	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29775161	29775267	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29775268	29775327	1	-	1	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29775268	29775327	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29775328	29775423	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29775424	29775524	1	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29775424	29775524	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29775525	29775659	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29775660	29775779	1	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29775660	29775779	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29775780	29775888	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29775889	29775951	1	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29775889	29775951	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29775952	29776041	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29776042	29776155	1	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29776042	29776155	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29776156	29776243	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29776244	29776299	1	-	2	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29776244	29776299	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29776300	29776399	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29776400	29776481	1	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29776400	29776481	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29776482	29776604	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29776605	29776686	1	-	1	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29776605	29776686	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29776687	29776865	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29776866	29776908	0.99	-	2	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29776866	29776908	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29776909	29777406	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29777407	29777598	0.76	-	2	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29777407	29777598	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29777599	29777751	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29777752	29777782	0.89	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29777752	29777782	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29777783	29777874	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29777875	29777955	1	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29777875	29777955	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29777956	29778063	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29778064	29778181	0.99	-	1	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29778064	29778181	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29778182	29778293	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29778294	29778334	1	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29778294	29778334	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29778335	29778429	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29778430	29778525	1	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29778430	29778525	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29778526	29778782	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29778783	29779221	0.94	-	1	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29778783	29779221	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29779222	29779562	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29779563	29779624	0.96	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29779563	29779624	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	intron	29779625	29779726	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	CDS	29779727	29780872	0.97	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	exon	29779727	29780872	.	-	.	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
Ledus.S1	AUGUSTUS	start_codon	29780870	29780872	.	-	0	transcript_id "Ledus.S1G365300.t1"; gene_id "Ledus.S1G365300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8720.t1 is derived from g9750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1574069	1576642	.	-	.	Ledus.S3G019700
Ledus.S3	AUGUSTUS	transcript	1574069	1576642	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	stop_codon	1574066	1574068	.	-	0	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	CDS	1574069	1574147	1	-	1	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	exon	1574069	1574147	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	intron	1574148	1574383	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	CDS	1574384	1574432	1	-	2	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	exon	1574384	1574432	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	intron	1574433	1574555	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	CDS	1574556	1574597	1	-	2	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	exon	1574556	1574597	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	intron	1574598	1574703	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	CDS	1574704	1574788	1	-	0	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	exon	1574704	1574788	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	intron	1574789	1574917	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	CDS	1574918	1575188	1	-	1	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	exon	1574918	1575188	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	intron	1575189	1575285	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	CDS	1575286	1575574	1	-	2	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	exon	1575286	1575574	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	intron	1575575	1575695	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	CDS	1575696	1575790	1	-	1	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	exon	1575696	1575790	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	intron	1575791	1576039	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	CDS	1576040	1576272	1	-	0	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	exon	1576040	1576272	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	intron	1576273	1576427	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	CDS	1576428	1576504	1	-	2	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	exon	1576428	1576504	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	intron	1576505	1576629	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	CDS	1576630	1576642	0.9	-	0	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	exon	1576630	1576642	.	-	.	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
Ledus.S3	AUGUSTUS	start_codon	1576640	1576642	.	-	0	transcript_id "Ledus.S3G019700.t1"; gene_id "Ledus.S3G019700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3542.t1 is derived from g978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9361510	9362413	.	-	.	Ledus.S1G096300
Ledus.S1	AUGUSTUS	transcript	9361510	9362413	.	-	.	transcript_id "Ledus.S1G096300.t1"; gene_id "Ledus.S1G096300"
Ledus.S1	AUGUSTUS	stop_codon	9361507	9361509	.	-	0	transcript_id "Ledus.S1G096300.t1"; gene_id "Ledus.S1G096300"
Ledus.S1	AUGUSTUS	CDS	9361510	9361814	0.94	-	2	transcript_id "Ledus.S1G096300.t1"; gene_id "Ledus.S1G096300"
Ledus.S1	AUGUSTUS	exon	9361510	9361814	.	-	.	transcript_id "Ledus.S1G096300.t1"; gene_id "Ledus.S1G096300"
Ledus.S1	AUGUSTUS	intron	9361815	9362174	.	-	.	transcript_id "Ledus.S1G096300.t1"; gene_id "Ledus.S1G096300"
Ledus.S1	AUGUSTUS	CDS	9362175	9362216	0.33	-	2	transcript_id "Ledus.S1G096300.t1"; gene_id "Ledus.S1G096300"
Ledus.S1	AUGUSTUS	exon	9362175	9362216	.	-	.	transcript_id "Ledus.S1G096300.t1"; gene_id "Ledus.S1G096300"
Ledus.S1	AUGUSTUS	intron	9362217	9362310	.	-	.	transcript_id "Ledus.S1G096300.t1"; gene_id "Ledus.S1G096300"
Ledus.S1	AUGUSTUS	CDS	9362311	9362413	0.61	-	0	transcript_id "Ledus.S1G096300.t1"; gene_id "Ledus.S1G096300"
Ledus.S1	AUGUSTUS	exon	9362311	9362413	.	-	.	transcript_id "Ledus.S1G096300.t1"; gene_id "Ledus.S1G096300"
Ledus.S1	AUGUSTUS	start_codon	9362411	9362413	.	-	0	transcript_id "Ledus.S1G096300.t1"; gene_id "Ledus.S1G096300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5265.t1 is derived from g2704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22791249	22791776	.	-	.	Ledus.S1G268600
Ledus.S1	AUGUSTUS	transcript	22791249	22791776	.	-	.	transcript_id "Ledus.S1G268600.t1"; gene_id "Ledus.S1G268600"
Ledus.S1	AUGUSTUS	stop_codon	22791246	22791248	.	-	0	transcript_id "Ledus.S1G268600.t1"; gene_id "Ledus.S1G268600"
Ledus.S1	AUGUSTUS	CDS	22791249	22791776	1	-	0	transcript_id "Ledus.S1G268600.t1"; gene_id "Ledus.S1G268600"
Ledus.S1	AUGUSTUS	exon	22791249	22791776	.	-	.	transcript_id "Ledus.S1G268600.t1"; gene_id "Ledus.S1G268600"
Ledus.S1	AUGUSTUS	start_codon	22791774	22791776	.	-	0	transcript_id "Ledus.S1G268600.t1"; gene_id "Ledus.S1G268600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3594.t1 is derived from g1030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9919063	9921771	.	-	.	Ledus.S1G101500
Ledus.S1	AUGUSTUS	transcript	9919063	9921771	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	stop_codon	9919060	9919062	.	-	0	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	CDS	9919063	9919142	1	-	2	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	exon	9919063	9919142	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	intron	9919143	9919224	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	CDS	9919225	9919364	1	-	1	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	exon	9919225	9919364	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	intron	9919365	9919448	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	CDS	9919449	9919542	1	-	2	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	exon	9919449	9919542	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	intron	9919543	9919622	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	CDS	9919623	9919657	0.82	-	1	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	exon	9919623	9919657	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	intron	9919658	9919752	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	CDS	9919753	9919865	0.44	-	0	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	exon	9919753	9919865	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	intron	9919866	9920131	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	CDS	9920132	9920218	1	-	0	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	exon	9920132	9920218	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	intron	9920219	9920297	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	CDS	9920298	9920356	1	-	2	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	exon	9920298	9920356	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	intron	9920357	9920467	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	CDS	9920468	9920510	0.96	-	0	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	exon	9920468	9920510	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	intron	9920511	9920605	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	CDS	9920606	9920670	1	-	2	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	exon	9920606	9920670	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	intron	9920671	9920764	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	CDS	9920765	9920965	1	-	2	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	exon	9920765	9920965	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	intron	9920966	9921215	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	CDS	9921216	9921375	1	-	0	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	exon	9921216	9921375	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	intron	9921376	9921453	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	CDS	9921454	9921771	0.68	-	0	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	exon	9921454	9921771	.	-	.	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
Ledus.S1	AUGUSTUS	start_codon	9921769	9921771	.	-	0	transcript_id "Ledus.S1G101500.t1"; gene_id "Ledus.S1G101500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2799.t1 is derived from g233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3841581	3845147	.	-	.	Ledus.S1G022000
Ledus.S1	AUGUSTUS	transcript	3841581	3845147	.	-	.	transcript_id "Ledus.S1G022000.t1"; gene_id "Ledus.S1G022000"
Ledus.S1	AUGUSTUS	stop_codon	3841578	3841580	.	-	0	transcript_id "Ledus.S1G022000.t1"; gene_id "Ledus.S1G022000"
Ledus.S1	AUGUSTUS	CDS	3841581	3845147	0.97	-	0	transcript_id "Ledus.S1G022000.t1"; gene_id "Ledus.S1G022000"
Ledus.S1	AUGUSTUS	exon	3841581	3845147	.	-	.	transcript_id "Ledus.S1G022000.t1"; gene_id "Ledus.S1G022000"
Ledus.S1	AUGUSTUS	start_codon	3845145	3845147	.	-	0	transcript_id "Ledus.S1G022000.t1"; gene_id "Ledus.S1G022000"
Ledus.S1	AUGUSTUS	transcript	3841581	3843398	.	-	.	transcript_id "Ledus.S1G022000.t2"; gene_id "Ledus.S1G022000"
Ledus.S1	AUGUSTUS	stop_codon	3841578	3841580	.	-	0	transcript_id "Ledus.S1G022000.t2"; gene_id "Ledus.S1G022000"
Ledus.S1	AUGUSTUS	CDS	3841581	3843398	0.93	-	0	transcript_id "Ledus.S1G022000.t2"; gene_id "Ledus.S1G022000"
Ledus.S1	AUGUSTUS	exon	3841581	3843398	.	-	.	transcript_id "Ledus.S1G022000.t2"; gene_id "Ledus.S1G022000"
Ledus.S1	AUGUSTUS	start_codon	3843396	3843398	.	-	0	transcript_id "Ledus.S1G022000.t2"; gene_id "Ledus.S1G022000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg530.t1 is derived from g7391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3062400	3062852	.	-	.	Ledus.S2G041200
Ledus.S2	AUGUSTUS	transcript	3062400	3062852	.	-	.	transcript_id "Ledus.S2G041200.t1"; gene_id "Ledus.S2G041200"
Ledus.S2	AUGUSTUS	stop_codon	3062397	3062399	.	-	0	transcript_id "Ledus.S2G041200.t1"; gene_id "Ledus.S2G041200"
Ledus.S2	AUGUSTUS	CDS	3062400	3062625	0.78	-	1	transcript_id "Ledus.S2G041200.t1"; gene_id "Ledus.S2G041200"
Ledus.S2	AUGUSTUS	exon	3062400	3062625	.	-	.	transcript_id "Ledus.S2G041200.t1"; gene_id "Ledus.S2G041200"
Ledus.S2	AUGUSTUS	intron	3062626	3062700	.	-	.	transcript_id "Ledus.S2G041200.t1"; gene_id "Ledus.S2G041200"
Ledus.S2	AUGUSTUS	CDS	3062701	3062852	0.47	-	0	transcript_id "Ledus.S2G041200.t1"; gene_id "Ledus.S2G041200"
Ledus.S2	AUGUSTUS	exon	3062701	3062852	.	-	.	transcript_id "Ledus.S2G041200.t1"; gene_id "Ledus.S2G041200"
Ledus.S2	AUGUSTUS	start_codon	3062850	3062852	.	-	0	transcript_id "Ledus.S2G041200.t1"; gene_id "Ledus.S2G041200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11210.t1 is derived from g4828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2751453	2752016	.	+	.	Ledus.S4G036600
Ledus.S4	AUGUSTUS	transcript	2751453	2752016	.	+	.	transcript_id "Ledus.S4G036600.t1"; gene_id "Ledus.S4G036600"
Ledus.S4	AUGUSTUS	start_codon	2751453	2751455	.	+	0	transcript_id "Ledus.S4G036600.t1"; gene_id "Ledus.S4G036600"
Ledus.S4	AUGUSTUS	CDS	2751453	2752016	0.8	+	0	transcript_id "Ledus.S4G036600.t1"; gene_id "Ledus.S4G036600"
Ledus.S4	AUGUSTUS	exon	2751453	2752016	.	+	.	transcript_id "Ledus.S4G036600.t1"; gene_id "Ledus.S4G036600"
Ledus.S4	AUGUSTUS	stop_codon	2752017	2752019	.	+	0	transcript_id "Ledus.S4G036600.t1"; gene_id "Ledus.S4G036600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg1589.t1 is derived from g8450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11157177	11161607	.	-	.	Ledus.S2G147100
Ledus.S2	AUGUSTUS	transcript	11157177	11161607	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	stop_codon	11157174	11157176	.	-	0	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11157177	11157292	0.95	-	2	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11157177	11157292	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11157293	11157378	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11157379	11157491	1	-	1	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11157379	11157491	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11157492	11157624	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11157625	11157762	1	-	1	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11157625	11157762	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11157763	11157956	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11157957	11158137	1	-	2	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11157957	11158137	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158138	11158294	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11158295	11158433	1	-	0	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11158295	11158433	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158434	11158597	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11158598	11158645	1	-	0	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11158598	11158645	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158646	11158731	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11158732	11158782	1	-	0	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11158732	11158782	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158783	11158872	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11158873	11158958	1	-	2	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11158873	11158958	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158959	11159061	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11159062	11159128	0.99	-	0	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11159062	11159128	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11159129	11159324	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11159325	11159402	1	-	0	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11159325	11159402	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11159403	11159581	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11159582	11159675	1	-	1	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11159582	11159675	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11159676	11159976	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11159977	11160047	1	-	0	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11159977	11160047	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11160048	11160198	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160199	11160339	0.99	-	0	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160199	11160339	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11160340	11160444	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160445	11160528	0.99	-	0	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160445	11160528	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11160529	11160611	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160612	11160894	0.91	-	1	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160612	11160894	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11160895	11160984	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160985	11161011	0.89	-	1	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160985	11161011	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11161012	11161248	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11161249	11161607	0.74	-	0	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11161249	11161607	.	-	.	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	start_codon	11161605	11161607	.	-	0	transcript_id "Ledus.S2G147100.t1"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	transcript	11157177	11161607	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	stop_codon	11157174	11157176	.	-	0	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11157177	11157292	0.95	-	2	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11157177	11157292	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11157293	11157378	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11157379	11157491	1	-	1	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11157379	11157491	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11157492	11157624	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11157625	11157762	1	-	1	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11157625	11157762	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11157763	11157956	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11157957	11158137	1	-	2	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11157957	11158137	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158138	11158294	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11158295	11158433	1	-	0	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11158295	11158433	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158434	11158597	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11158598	11158645	1	-	0	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11158598	11158645	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158646	11158731	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11158732	11158782	1	-	0	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11158732	11158782	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158783	11158872	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11158873	11158958	0.99	-	2	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11158873	11158958	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158959	11159075	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11159076	11159118	0.39	-	0	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11159076	11159118	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11159119	11159324	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11159325	11159402	1	-	0	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11159325	11159402	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11159403	11159581	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11159582	11159675	1	-	1	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11159582	11159675	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11159676	11159976	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11159977	11160047	1	-	0	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11159977	11160047	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11160048	11160198	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160199	11160339	1	-	0	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160199	11160339	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11160340	11160444	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160445	11160528	1	-	0	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160445	11160528	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11160529	11160611	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160612	11160894	0.82	-	1	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160612	11160894	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11160895	11160984	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160985	11161011	0.78	-	1	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160985	11161011	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11161012	11161248	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11161249	11161607	0.61	-	0	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11161249	11161607	.	-	.	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	start_codon	11161605	11161607	.	-	0	transcript_id "Ledus.S2G147100.t2"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	transcript	11157177	11161607	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	stop_codon	11157174	11157176	.	-	0	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11157177	11157292	0.95	-	2	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11157177	11157292	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11157293	11157378	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11157379	11157491	1	-	1	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11157379	11157491	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11157492	11157624	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11157625	11157762	1	-	1	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11157625	11157762	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11157763	11157956	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11157957	11158137	1	-	2	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11157957	11158137	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158138	11158294	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11158295	11158433	1	-	0	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11158295	11158433	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158434	11158597	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11158598	11158645	1	-	0	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11158598	11158645	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158646	11158731	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11158732	11158782	1	-	0	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11158732	11158782	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158783	11158872	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11158873	11158958	1	-	2	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11158873	11158958	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11158959	11159061	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11159062	11159128	0.99	-	0	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11159062	11159128	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11159129	11159324	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11159325	11159402	1	-	0	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11159325	11159402	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11159403	11159581	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11159582	11159675	1	-	1	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11159582	11159675	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11159676	11160047	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160048	11160130	0.53	-	0	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160048	11160130	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11160131	11160198	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160199	11160339	0.48	-	0	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160199	11160339	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11160340	11160444	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160445	11160528	1	-	0	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160445	11160528	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11160529	11160611	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160612	11160894	0.78	-	1	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160612	11160894	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11160895	11160984	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11160985	11161011	0.77	-	1	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11160985	11161011	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	intron	11161012	11161248	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	CDS	11161249	11161607	0.55	-	0	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	exon	11161249	11161607	.	-	.	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
Ledus.S2	AUGUSTUS	start_codon	11161605	11161607	.	-	0	transcript_id "Ledus.S2G147100.t3"; gene_id "Ledus.S2G147100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5733.t1 is derived from g3172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26336681	26339227	.	-	.	Ledus.S1G315400
Ledus.S1	AUGUSTUS	transcript	26336681	26339227	.	-	.	transcript_id "Ledus.S1G315400.t1"; gene_id "Ledus.S1G315400"
Ledus.S1	AUGUSTUS	stop_codon	26336678	26336680	.	-	0	transcript_id "Ledus.S1G315400.t1"; gene_id "Ledus.S1G315400"
Ledus.S1	AUGUSTUS	CDS	26336681	26339227	0.98	-	0	transcript_id "Ledus.S1G315400.t1"; gene_id "Ledus.S1G315400"
Ledus.S1	AUGUSTUS	exon	26336681	26339227	.	-	.	transcript_id "Ledus.S1G315400.t1"; gene_id "Ledus.S1G315400"
Ledus.S1	AUGUSTUS	start_codon	26339225	26339227	.	-	0	transcript_id "Ledus.S1G315400.t1"; gene_id "Ledus.S1G315400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3844.t1 is derived from g1280.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13111285	13111863	.	+	.	Ledus.S1G126500
Ledus.S1	AUGUSTUS	transcript	13111285	13111863	.	+	.	transcript_id "Ledus.S1G126500.t1"; gene_id "Ledus.S1G126500"
Ledus.S1	AUGUSTUS	start_codon	13111285	13111287	.	+	0	transcript_id "Ledus.S1G126500.t1"; gene_id "Ledus.S1G126500"
Ledus.S1	AUGUSTUS	CDS	13111285	13111863	0.6	+	0	transcript_id "Ledus.S1G126500.t1"; gene_id "Ledus.S1G126500"
Ledus.S1	AUGUSTUS	exon	13111285	13111863	.	+	.	transcript_id "Ledus.S1G126500.t1"; gene_id "Ledus.S1G126500"
Ledus.S1	AUGUSTUS	stop_codon	13111864	13111866	.	+	0	transcript_id "Ledus.S1G126500.t1"; gene_id "Ledus.S1G126500"
# This transcript jg8925.t2 is derived from g9955.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8926.t1 is derived from g9956.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3171245	3173194	.	+	.	Ledus.S3G040300
Ledus.S3	AUGUSTUS	transcript	3171245	3173194	.	+	.	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	start_codon	3171245	3171247	.	+	0	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	CDS	3171245	3171378	0.76	+	0	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	exon	3171245	3171378	.	+	.	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	intron	3171379	3171452	.	+	.	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	CDS	3171453	3171582	1	+	1	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	exon	3171453	3171582	.	+	.	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	intron	3171583	3172005	.	+	.	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	CDS	3172006	3172206	1	+	0	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	exon	3172006	3172206	.	+	.	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	intron	3172207	3172425	.	+	.	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	CDS	3172426	3172593	1	+	0	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	exon	3172426	3172593	.	+	.	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	intron	3172594	3172693	.	+	.	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	CDS	3172694	3173194	1	+	0	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	exon	3172694	3173194	.	+	.	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
Ledus.S3	AUGUSTUS	stop_codon	3173195	3173197	.	+	0	transcript_id "Ledus.S3G040300.t1"; gene_id "Ledus.S3G040300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg476.t1 is derived from g7337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2804440	2805588	.	-	.	Ledus.S2G035800
Ledus.S2	AUGUSTUS	transcript	2804440	2805588	.	-	.	transcript_id "Ledus.S2G035800.t1"; gene_id "Ledus.S2G035800"
Ledus.S2	AUGUSTUS	stop_codon	2804437	2804439	.	-	0	transcript_id "Ledus.S2G035800.t1"; gene_id "Ledus.S2G035800"
Ledus.S2	AUGUSTUS	CDS	2804440	2805588	1	-	0	transcript_id "Ledus.S2G035800.t1"; gene_id "Ledus.S2G035800"
Ledus.S2	AUGUSTUS	exon	2804440	2805588	.	-	.	transcript_id "Ledus.S2G035800.t1"; gene_id "Ledus.S2G035800"
Ledus.S2	AUGUSTUS	start_codon	2805586	2805588	.	-	0	transcript_id "Ledus.S2G035800.t1"; gene_id "Ledus.S2G035800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6531.t1 is derived from g3974.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32140066	32142935	.	-	.	Ledus.S1G395200
Ledus.S1	AUGUSTUS	transcript	32140066	32142935	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	stop_codon	32140063	32140065	.	-	0	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	CDS	32140066	32140142	0.25	-	2	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	exon	32140066	32140142	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	intron	32140143	32140325	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	CDS	32140326	32140379	0.2	-	2	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	exon	32140326	32140379	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	intron	32140380	32140549	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	CDS	32140550	32140667	0.87	-	0	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	exon	32140550	32140667	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	intron	32140668	32140857	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	CDS	32140858	32140972	1	-	1	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	exon	32140858	32140972	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	intron	32140973	32141101	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	CDS	32141102	32141172	0.99	-	0	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	exon	32141102	32141172	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	intron	32141173	32141273	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	CDS	32141274	32141648	0.99	-	0	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	exon	32141274	32141648	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	intron	32141649	32141738	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	CDS	32141739	32141814	0.55	-	1	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	exon	32141739	32141814	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	intron	32141815	32141907	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	CDS	32141908	32142042	0.55	-	1	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	exon	32141908	32142042	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	intron	32142043	32142202	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	CDS	32142203	32142336	1	-	0	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	exon	32142203	32142336	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	intron	32142337	32142473	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	CDS	32142474	32142560	1	-	0	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	exon	32142474	32142560	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	intron	32142561	32142686	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	CDS	32142687	32142935	0.46	-	0	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	exon	32142687	32142935	.	-	.	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
Ledus.S1	AUGUSTUS	start_codon	32142933	32142935	.	-	0	transcript_id "Ledus.S1G395200.t1"; gene_id "Ledus.S1G395200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9517.t1 is derived from g10547.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7541823	7546410	.	-	.	Ledus.S3G099400
Ledus.S3	AUGUSTUS	transcript	7541823	7546410	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	stop_codon	7541820	7541822	.	-	0	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7541823	7541853	0.96	-	1	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7541823	7541853	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7541854	7542005	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7542006	7542085	1	-	0	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7542006	7542085	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7542086	7542265	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7542266	7542364	1	-	0	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7542266	7542364	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7542365	7542522	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7542523	7542609	0.52	-	0	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7542523	7542609	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7542610	7542744	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7542745	7542788	1	-	2	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7542745	7542788	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7542789	7542932	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7542933	7543005	1	-	0	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7542933	7543005	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7543006	7543115	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7543116	7543202	1	-	0	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7543116	7543202	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7543203	7543407	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7543408	7543492	1	-	1	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7543408	7543492	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7543493	7543743	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7543744	7543817	1	-	0	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7543744	7543817	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7543818	7544097	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7544098	7544693	0.95	-	2	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7544098	7544693	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7544694	7544780	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7544781	7546410	0.64	-	0	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7544781	7546410	.	-	.	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	start_codon	7546408	7546410	.	-	0	transcript_id "Ledus.S3G099400.t1"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	transcript	7541823	7546410	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	stop_codon	7541820	7541822	.	-	0	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7541823	7541853	0.94	-	1	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7541823	7541853	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7541854	7542005	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7542006	7542112	1	-	0	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7542006	7542112	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7542113	7542265	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7542266	7542364	1	-	0	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7542266	7542364	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7542365	7542522	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7542523	7542609	0.44	-	0	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7542523	7542609	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7542610	7542744	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7542745	7542788	1	-	2	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7542745	7542788	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7542789	7542932	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7542933	7543005	1	-	0	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7542933	7543005	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7543006	7543115	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7543116	7543202	1	-	0	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7543116	7543202	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7543203	7543407	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7543408	7543492	1	-	1	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7543408	7543492	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7543493	7543743	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7543744	7543817	1	-	0	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7543744	7543817	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7543818	7544097	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7544098	7544693	0.87	-	2	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7544098	7544693	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	intron	7544694	7544780	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	CDS	7544781	7546410	0.67	-	0	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	exon	7544781	7546410	.	-	.	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
Ledus.S3	AUGUSTUS	start_codon	7546408	7546410	.	-	0	transcript_id "Ledus.S3G099400.t2"; gene_id "Ledus.S3G099400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6728.t1 is derived from g4171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33558520	33559845	.	-	.	Ledus.S1G414900
Ledus.S1	AUGUSTUS	transcript	33558520	33559845	.	-	.	transcript_id "Ledus.S1G414900.t1"; gene_id "Ledus.S1G414900"
Ledus.S1	AUGUSTUS	stop_codon	33558517	33558519	.	-	0	transcript_id "Ledus.S1G414900.t1"; gene_id "Ledus.S1G414900"
Ledus.S1	AUGUSTUS	CDS	33558520	33558905	0.57	-	2	transcript_id "Ledus.S1G414900.t1"; gene_id "Ledus.S1G414900"
Ledus.S1	AUGUSTUS	exon	33558520	33558905	.	-	.	transcript_id "Ledus.S1G414900.t1"; gene_id "Ledus.S1G414900"
Ledus.S1	AUGUSTUS	intron	33558906	33559089	.	-	.	transcript_id "Ledus.S1G414900.t1"; gene_id "Ledus.S1G414900"
Ledus.S1	AUGUSTUS	CDS	33559090	33559279	0.25	-	0	transcript_id "Ledus.S1G414900.t1"; gene_id "Ledus.S1G414900"
Ledus.S1	AUGUSTUS	exon	33559090	33559279	.	-	.	transcript_id "Ledus.S1G414900.t1"; gene_id "Ledus.S1G414900"
Ledus.S1	AUGUSTUS	intron	33559280	33559407	.	-	.	transcript_id "Ledus.S1G414900.t1"; gene_id "Ledus.S1G414900"
Ledus.S1	AUGUSTUS	CDS	33559408	33559845	0.43	-	0	transcript_id "Ledus.S1G414900.t1"; gene_id "Ledus.S1G414900"
Ledus.S1	AUGUSTUS	exon	33559408	33559845	.	-	.	transcript_id "Ledus.S1G414900.t1"; gene_id "Ledus.S1G414900"
Ledus.S1	AUGUSTUS	start_codon	33559843	33559845	.	-	0	transcript_id "Ledus.S1G414900.t1"; gene_id "Ledus.S1G414900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg864.t1 is derived from g7725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5787512	5787781	.	-	.	Ledus.S2G074600
Ledus.S2	AUGUSTUS	transcript	5787512	5787781	.	-	.	transcript_id "Ledus.S2G074600.t1"; gene_id "Ledus.S2G074600"
Ledus.S2	AUGUSTUS	stop_codon	5787509	5787511	.	-	0	transcript_id "Ledus.S2G074600.t1"; gene_id "Ledus.S2G074600"
Ledus.S2	AUGUSTUS	CDS	5787512	5787781	0.85	-	0	transcript_id "Ledus.S2G074600.t1"; gene_id "Ledus.S2G074600"
Ledus.S2	AUGUSTUS	exon	5787512	5787781	.	-	.	transcript_id "Ledus.S2G074600.t1"; gene_id "Ledus.S2G074600"
Ledus.S2	AUGUSTUS	start_codon	5787779	5787781	.	-	0	transcript_id "Ledus.S2G074600.t1"; gene_id "Ledus.S2G074600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1798.t1 is derived from g8661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12663344	12664839	.	+	.	Ledus.S2G168000
Ledus.S2	AUGUSTUS	transcript	12663344	12664839	.	+	.	transcript_id "Ledus.S2G168000.t1"; gene_id "Ledus.S2G168000"
Ledus.S2	AUGUSTUS	start_codon	12663344	12663346	.	+	0	transcript_id "Ledus.S2G168000.t1"; gene_id "Ledus.S2G168000"
Ledus.S2	AUGUSTUS	CDS	12663344	12663731	0.01	+	0	transcript_id "Ledus.S2G168000.t1"; gene_id "Ledus.S2G168000"
Ledus.S2	AUGUSTUS	exon	12663344	12663731	.	+	.	transcript_id "Ledus.S2G168000.t1"; gene_id "Ledus.S2G168000"
Ledus.S2	AUGUSTUS	intron	12663732	12664837	.	+	.	transcript_id "Ledus.S2G168000.t1"; gene_id "Ledus.S2G168000"
Ledus.S2	AUGUSTUS	CDS	12664838	12664839	0.01	+	2	transcript_id "Ledus.S2G168000.t1"; gene_id "Ledus.S2G168000"
Ledus.S2	AUGUSTUS	exon	12664838	12664839	.	+	.	transcript_id "Ledus.S2G168000.t1"; gene_id "Ledus.S2G168000"
Ledus.S2	AUGUSTUS	stop_codon	12664840	12664842	.	+	0	transcript_id "Ledus.S2G168000.t1"; gene_id "Ledus.S2G168000"
# This transcript jg7085.t2 is derived from g6616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7086.t1 is derived from g6617.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1481523	1482848	.	+	.	Ledus.C7G014700
Ledus.C7	AUGUSTUS	transcript	1481523	1482848	.	+	.	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	start_codon	1481523	1481525	.	+	0	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	CDS	1481523	1481757	0.49	+	0	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	exon	1481523	1481757	.	+	.	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	intron	1481758	1481903	.	+	.	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	CDS	1481904	1482253	1	+	2	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	exon	1481904	1482253	.	+	.	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	intron	1482254	1482345	.	+	.	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	CDS	1482346	1482425	1	+	0	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	exon	1482346	1482425	.	+	.	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	intron	1482426	1482568	.	+	.	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	CDS	1482569	1482848	1	+	1	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	exon	1482569	1482848	.	+	.	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	stop_codon	1482849	1482851	.	+	0	transcript_id "Ledus.C7G014700.t1"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	transcript	1481523	1482848	.	+	.	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	start_codon	1481523	1481525	.	+	0	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	CDS	1481523	1481757	0.43	+	0	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	exon	1481523	1481757	.	+	.	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	intron	1481758	1481900	.	+	.	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	CDS	1481901	1482253	1	+	2	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	exon	1481901	1482253	.	+	.	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	intron	1482254	1482345	.	+	.	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	CDS	1482346	1482425	1	+	0	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	exon	1482346	1482425	.	+	.	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	intron	1482426	1482568	.	+	.	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	CDS	1482569	1482848	1	+	1	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	exon	1482569	1482848	.	+	.	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
Ledus.C7	AUGUSTUS	stop_codon	1482849	1482851	.	+	0	transcript_id "Ledus.C7G014700.t2"; gene_id "Ledus.C7G014700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11981.t1 is derived from g5600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8259632	8259952	.	-	.	Ledus.S4G113700
Ledus.S4	AUGUSTUS	transcript	8259632	8259952	.	-	.	transcript_id "Ledus.S4G113700.t1"; gene_id "Ledus.S4G113700"
Ledus.S4	AUGUSTUS	stop_codon	8259629	8259631	.	-	0	transcript_id "Ledus.S4G113700.t1"; gene_id "Ledus.S4G113700"
Ledus.S4	AUGUSTUS	CDS	8259632	8259952	0.33	-	0	transcript_id "Ledus.S4G113700.t1"; gene_id "Ledus.S4G113700"
Ledus.S4	AUGUSTUS	exon	8259632	8259952	.	-	.	transcript_id "Ledus.S4G113700.t1"; gene_id "Ledus.S4G113700"
Ledus.S4	AUGUSTUS	start_codon	8259950	8259952	.	-	0	transcript_id "Ledus.S4G113700.t1"; gene_id "Ledus.S4G113700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12917.t1 is derived from g4409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	321760	326197	.	+	.	Ledus.C9G002500
Ledus.C9	AUGUSTUS	transcript	321760	326197	.	+	.	transcript_id "Ledus.C9G002500.t1"; gene_id "Ledus.C9G002500"
Ledus.C9	AUGUSTUS	start_codon	321760	321762	.	+	0	transcript_id "Ledus.C9G002500.t1"; gene_id "Ledus.C9G002500"
Ledus.C9	AUGUSTUS	CDS	321760	321772	0.02	+	0	transcript_id "Ledus.C9G002500.t1"; gene_id "Ledus.C9G002500"
Ledus.C9	AUGUSTUS	exon	321760	321772	.	+	.	transcript_id "Ledus.C9G002500.t1"; gene_id "Ledus.C9G002500"
Ledus.C9	AUGUSTUS	intron	321773	326150	.	+	.	transcript_id "Ledus.C9G002500.t1"; gene_id "Ledus.C9G002500"
Ledus.C9	AUGUSTUS	CDS	326151	326197	0.01	+	2	transcript_id "Ledus.C9G002500.t1"; gene_id "Ledus.C9G002500"
Ledus.C9	AUGUSTUS	exon	326151	326197	.	+	.	transcript_id "Ledus.C9G002500.t1"; gene_id "Ledus.C9G002500"
Ledus.C9	AUGUSTUS	stop_codon	326198	326200	.	+	0	transcript_id "Ledus.C9G002500.t1"; gene_id "Ledus.C9G002500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9727.t1 is derived from g10757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9436789	9437177	.	-	.	Ledus.S3G120400
Ledus.S3	AUGUSTUS	transcript	9436789	9437177	.	-	.	transcript_id "Ledus.S3G120400.t1"; gene_id "Ledus.S3G120400"
Ledus.S3	AUGUSTUS	stop_codon	9436786	9436788	.	-	0	transcript_id "Ledus.S3G120400.t1"; gene_id "Ledus.S3G120400"
Ledus.S3	AUGUSTUS	CDS	9436789	9436947	0.71	-	0	transcript_id "Ledus.S3G120400.t1"; gene_id "Ledus.S3G120400"
Ledus.S3	AUGUSTUS	exon	9436789	9436947	.	-	.	transcript_id "Ledus.S3G120400.t1"; gene_id "Ledus.S3G120400"
Ledus.S3	AUGUSTUS	intron	9436948	9437045	.	-	.	transcript_id "Ledus.S3G120400.t1"; gene_id "Ledus.S3G120400"
Ledus.S3	AUGUSTUS	CDS	9437046	9437177	0.9	-	0	transcript_id "Ledus.S3G120400.t1"; gene_id "Ledus.S3G120400"
Ledus.S3	AUGUSTUS	exon	9437046	9437177	.	-	.	transcript_id "Ledus.S3G120400.t1"; gene_id "Ledus.S3G120400"
Ledus.S3	AUGUSTUS	start_codon	9437175	9437177	.	-	0	transcript_id "Ledus.S3G120400.t1"; gene_id "Ledus.S3G120400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1895.t1 is derived from g8758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13207882	13212368	.	-	.	Ledus.S2G177700
Ledus.S2	AUGUSTUS	transcript	13207882	13212368	.	-	.	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	stop_codon	13207879	13207881	.	-	0	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	CDS	13207882	13209846	1	-	0	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	exon	13207882	13209846	.	-	.	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	intron	13209847	13209933	.	-	.	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	CDS	13209934	13210185	1	-	0	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	exon	13209934	13210185	.	-	.	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	intron	13210186	13210277	.	-	.	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	CDS	13210278	13210379	1	-	0	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	exon	13210278	13210379	.	-	.	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	intron	13210380	13210498	.	-	.	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	CDS	13210499	13210624	1	-	0	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	exon	13210499	13210624	.	-	.	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	intron	13210625	13210704	.	-	.	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	CDS	13210705	13211049	0.99	-	0	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	exon	13210705	13211049	.	-	.	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	intron	13211050	13211402	.	-	.	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	CDS	13211403	13212368	0.42	-	0	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	exon	13211403	13212368	.	-	.	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
Ledus.S2	AUGUSTUS	start_codon	13212366	13212368	.	-	0	transcript_id "Ledus.S2G177700.t1"; gene_id "Ledus.S2G177700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7370.t1 is derived from g12041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1626157	1627274	.	+	.	Ledus.S5G014800
Ledus.S5	AUGUSTUS	transcript	1626157	1627274	.	+	.	transcript_id "Ledus.S5G014800.t1"; gene_id "Ledus.S5G014800"
Ledus.S5	AUGUSTUS	start_codon	1626157	1626159	.	+	0	transcript_id "Ledus.S5G014800.t1"; gene_id "Ledus.S5G014800"
Ledus.S5	AUGUSTUS	CDS	1626157	1626641	0.55	+	0	transcript_id "Ledus.S5G014800.t1"; gene_id "Ledus.S5G014800"
Ledus.S5	AUGUSTUS	exon	1626157	1626641	.	+	.	transcript_id "Ledus.S5G014800.t1"; gene_id "Ledus.S5G014800"
Ledus.S5	AUGUSTUS	intron	1626642	1627264	.	+	.	transcript_id "Ledus.S5G014800.t1"; gene_id "Ledus.S5G014800"
Ledus.S5	AUGUSTUS	CDS	1627265	1627274	0.83	+	1	transcript_id "Ledus.S5G014800.t1"; gene_id "Ledus.S5G014800"
Ledus.S5	AUGUSTUS	exon	1627265	1627274	.	+	.	transcript_id "Ledus.S5G014800.t1"; gene_id "Ledus.S5G014800"
Ledus.S5	AUGUSTUS	stop_codon	1627275	1627277	.	+	0	transcript_id "Ledus.S5G014800.t1"; gene_id "Ledus.S5G014800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12868.t1 is derived from g4441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	129260	133893	.	+	.	Ledus.C10G001100
Ledus.C10	AUGUSTUS	transcript	129260	133893	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	start_codon	129260	129262	.	+	0	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	CDS	129260	129856	0.92	+	0	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	exon	129260	129856	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	intron	129857	130046	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	CDS	130047	130115	1	+	0	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	exon	130047	130115	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	intron	130116	130337	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	CDS	130338	130433	1	+	0	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	exon	130338	130433	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	intron	130434	130587	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	CDS	130588	130644	1	+	0	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	exon	130588	130644	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	intron	130645	130699	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	CDS	130700	130728	1	+	0	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	exon	130700	130728	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	intron	130729	130871	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	CDS	130872	131067	1	+	1	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	exon	130872	131067	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	intron	131068	131255	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	CDS	131256	131431	1	+	0	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	exon	131256	131431	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	intron	131432	131523	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	CDS	131524	131653	1	+	1	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	exon	131524	131653	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	intron	131654	131784	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	CDS	131785	131945	1	+	0	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	exon	131785	131945	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	intron	131946	132030	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	CDS	132031	132134	1	+	1	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	exon	132031	132134	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	intron	132135	132568	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	CDS	132569	132695	1	+	2	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	exon	132569	132695	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	intron	132696	133850	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	CDS	133851	133893	0.99	+	1	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	exon	133851	133893	.	+	.	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
Ledus.C10	AUGUSTUS	stop_codon	133894	133896	.	+	0	transcript_id "Ledus.C10G001100.t1"; gene_id "Ledus.C10G001100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7686.t1 is derived from g12357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5176787	5177617	.	-	.	Ledus.S5G046400
Ledus.S5	AUGUSTUS	transcript	5176787	5177617	.	-	.	transcript_id "Ledus.S5G046400.t1"; gene_id "Ledus.S5G046400"
Ledus.S5	AUGUSTUS	stop_codon	5176784	5176786	.	-	0	transcript_id "Ledus.S5G046400.t1"; gene_id "Ledus.S5G046400"
Ledus.S5	AUGUSTUS	CDS	5176787	5177617	0.6	-	0	transcript_id "Ledus.S5G046400.t1"; gene_id "Ledus.S5G046400"
Ledus.S5	AUGUSTUS	exon	5176787	5177617	.	-	.	transcript_id "Ledus.S5G046400.t1"; gene_id "Ledus.S5G046400"
Ledus.S5	AUGUSTUS	start_codon	5177615	5177617	.	-	0	transcript_id "Ledus.S5G046400.t1"; gene_id "Ledus.S5G046400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7926.t1 is derived from g12597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7869967	7872461	.	+	.	Ledus.S5G070400
Ledus.S5	AUGUSTUS	transcript	7869967	7872461	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	start_codon	7869967	7869969	.	+	0	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	CDS	7869967	7870272	0.48	+	0	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	exon	7869967	7870272	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	intron	7870273	7870449	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	CDS	7870450	7870486	0.71	+	0	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	exon	7870450	7870486	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	intron	7870487	7870591	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	CDS	7870592	7870775	0.7	+	2	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	exon	7870592	7870775	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	intron	7870776	7870867	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	CDS	7870868	7871016	1	+	1	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	exon	7870868	7871016	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	intron	7871017	7871121	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	CDS	7871122	7871355	0.95	+	2	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	exon	7871122	7871355	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	intron	7871356	7871435	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	CDS	7871436	7871625	0.81	+	2	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	exon	7871436	7871625	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	intron	7871626	7871688	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	CDS	7871689	7871814	1	+	1	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	exon	7871689	7871814	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	intron	7871815	7871900	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	CDS	7871901	7872006	0.97	+	1	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	exon	7871901	7872006	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	intron	7872007	7872098	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	CDS	7872099	7872461	1	+	0	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	exon	7872099	7872461	.	+	.	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
Ledus.S5	AUGUSTUS	stop_codon	7872462	7872464	.	+	0	transcript_id "Ledus.S5G070400.t1"; gene_id "Ledus.S5G070400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7667.t1 is derived from g12338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4979761	4983928	.	+	.	Ledus.S5G044500
Ledus.S5	AUGUSTUS	transcript	4979761	4983928	.	+	.	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	start_codon	4979761	4979763	.	+	0	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	CDS	4979761	4979902	0.54	+	0	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	exon	4979761	4979902	.	+	.	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	intron	4979903	4979986	.	+	.	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	CDS	4979987	4980312	1	+	2	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	exon	4979987	4980312	.	+	.	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	intron	4980313	4980390	.	+	.	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	CDS	4980391	4982724	1	+	0	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	exon	4980391	4982724	.	+	.	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	intron	4982725	4982815	.	+	.	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	CDS	4982816	4983005	1	+	0	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	exon	4982816	4983005	.	+	.	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	intron	4983006	4983110	.	+	.	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	CDS	4983111	4983928	1	+	2	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	exon	4983111	4983928	.	+	.	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
Ledus.S5	AUGUSTUS	stop_codon	4983929	4983931	.	+	0	transcript_id "Ledus.S5G044500.t1"; gene_id "Ledus.S5G044500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9614.t1 is derived from g10644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8418425	8418793	.	-	.	Ledus.S3G109100
Ledus.S3	AUGUSTUS	transcript	8418425	8418793	.	-	.	transcript_id "Ledus.S3G109100.t1"; gene_id "Ledus.S3G109100"
Ledus.S3	AUGUSTUS	stop_codon	8418422	8418424	.	-	0	transcript_id "Ledus.S3G109100.t1"; gene_id "Ledus.S3G109100"
Ledus.S3	AUGUSTUS	CDS	8418425	8418793	0.26	-	0	transcript_id "Ledus.S3G109100.t1"; gene_id "Ledus.S3G109100"
Ledus.S3	AUGUSTUS	exon	8418425	8418793	.	-	.	transcript_id "Ledus.S3G109100.t1"; gene_id "Ledus.S3G109100"
Ledus.S3	AUGUSTUS	start_codon	8418791	8418793	.	-	0	transcript_id "Ledus.S3G109100.t1"; gene_id "Ledus.S3G109100"
# This transcript jg4595.t2 is derived from g2032.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4595.t3 is derived from g2032.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4595.t4 is derived from g2032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4596.t1 is derived from g2033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17996081	17996329	.	-	.	Ledus.S1G201700
Ledus.S1	AUGUSTUS	transcript	17996081	17996329	.	-	.	transcript_id "Ledus.S1G201700.t1"; gene_id "Ledus.S1G201700"
Ledus.S1	AUGUSTUS	stop_codon	17996078	17996080	.	-	0	transcript_id "Ledus.S1G201700.t1"; gene_id "Ledus.S1G201700"
Ledus.S1	AUGUSTUS	CDS	17996081	17996329	0.84	-	0	transcript_id "Ledus.S1G201700.t1"; gene_id "Ledus.S1G201700"
Ledus.S1	AUGUSTUS	exon	17996081	17996329	.	-	.	transcript_id "Ledus.S1G201700.t1"; gene_id "Ledus.S1G201700"
Ledus.S1	AUGUSTUS	start_codon	17996327	17996329	.	-	0	transcript_id "Ledus.S1G201700.t1"; gene_id "Ledus.S1G201700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5726.t1 is derived from g3165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26256978	26257214	.	+	.	Ledus.S1G314700
Ledus.S1	AUGUSTUS	transcript	26256978	26257214	.	+	.	transcript_id "Ledus.S1G314700.t1"; gene_id "Ledus.S1G314700"
Ledus.S1	AUGUSTUS	start_codon	26256978	26256980	.	+	0	transcript_id "Ledus.S1G314700.t1"; gene_id "Ledus.S1G314700"
Ledus.S1	AUGUSTUS	CDS	26256978	26257214	0.58	+	0	transcript_id "Ledus.S1G314700.t1"; gene_id "Ledus.S1G314700"
Ledus.S1	AUGUSTUS	exon	26256978	26257214	.	+	.	transcript_id "Ledus.S1G314700.t1"; gene_id "Ledus.S1G314700"
Ledus.S1	AUGUSTUS	stop_codon	26257215	26257217	.	+	0	transcript_id "Ledus.S1G314700.t1"; gene_id "Ledus.S1G314700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10258.t1 is derived from g11288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13856049	13858752	.	-	.	Ledus.S3G173500
Ledus.S3	AUGUSTUS	transcript	13856049	13858752	.	-	.	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	stop_codon	13856046	13856048	.	-	0	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	CDS	13856049	13856306	1	-	0	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	exon	13856049	13856306	.	-	.	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	intron	13856307	13856610	.	-	.	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	CDS	13856611	13857837	0.95	-	0	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	exon	13856611	13857837	.	-	.	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	intron	13857838	13857920	.	-	.	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	CDS	13857921	13858439	0.96	-	0	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	exon	13857921	13858439	.	-	.	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	intron	13858440	13858596	.	-	.	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	CDS	13858597	13858752	0.39	-	0	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	exon	13858597	13858752	.	-	.	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
Ledus.S3	AUGUSTUS	start_codon	13858750	13858752	.	-	0	transcript_id "Ledus.S3G173500.t1"; gene_id "Ledus.S3G173500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11868.t1 is derived from g5487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7444337	7444570	.	+	.	Ledus.S4G102400
Ledus.S4	AUGUSTUS	transcript	7444337	7444570	.	+	.	transcript_id "Ledus.S4G102400.t1"; gene_id "Ledus.S4G102400"
Ledus.S4	AUGUSTUS	start_codon	7444337	7444339	.	+	0	transcript_id "Ledus.S4G102400.t1"; gene_id "Ledus.S4G102400"
Ledus.S4	AUGUSTUS	CDS	7444337	7444570	0.8	+	0	transcript_id "Ledus.S4G102400.t1"; gene_id "Ledus.S4G102400"
Ledus.S4	AUGUSTUS	exon	7444337	7444570	.	+	.	transcript_id "Ledus.S4G102400.t1"; gene_id "Ledus.S4G102400"
Ledus.S4	AUGUSTUS	stop_codon	7444571	7444573	.	+	0	transcript_id "Ledus.S4G102400.t1"; gene_id "Ledus.S4G102400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7658.t1 is derived from g12329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4842610	4843847	.	-	.	Ledus.S5G043600
Ledus.S5	AUGUSTUS	transcript	4842610	4843847	.	-	.	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	stop_codon	4842607	4842609	.	-	0	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	CDS	4842610	4842808	0.96	-	1	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	exon	4842610	4842808	.	-	.	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	intron	4842809	4842937	.	-	.	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	CDS	4842938	4843041	1	-	0	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	exon	4842938	4843041	.	-	.	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	intron	4843042	4843132	.	-	.	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	CDS	4843133	4843714	0.99	-	0	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	exon	4843133	4843714	.	-	.	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	intron	4843715	4843811	.	-	.	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	CDS	4843812	4843847	0.67	-	0	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	exon	4843812	4843847	.	-	.	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
Ledus.S5	AUGUSTUS	start_codon	4843845	4843847	.	-	0	transcript_id "Ledus.S5G043600.t1"; gene_id "Ledus.S5G043600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12993.t1 is derived from g6803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2039676	2040011	.	-	.	Ledus.S6G005500
Ledus.S6	AUGUSTUS	transcript	2039676	2040011	.	-	.	transcript_id "Ledus.S6G005500.t1"; gene_id "Ledus.S6G005500"
Ledus.S6	AUGUSTUS	stop_codon	2039673	2039675	.	-	0	transcript_id "Ledus.S6G005500.t1"; gene_id "Ledus.S6G005500"
Ledus.S6	AUGUSTUS	CDS	2039676	2040011	0.49	-	0	transcript_id "Ledus.S6G005500.t1"; gene_id "Ledus.S6G005500"
Ledus.S6	AUGUSTUS	exon	2039676	2040011	.	-	.	transcript_id "Ledus.S6G005500.t1"; gene_id "Ledus.S6G005500"
Ledus.S6	AUGUSTUS	start_codon	2040009	2040011	.	-	0	transcript_id "Ledus.S6G005500.t1"; gene_id "Ledus.S6G005500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8283.t1 is derived from g12954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10429352	10430470	.	+	.	Ledus.S5G106100
Ledus.S5	AUGUSTUS	transcript	10429352	10430470	.	+	.	transcript_id "Ledus.S5G106100.t1"; gene_id "Ledus.S5G106100"
Ledus.S5	AUGUSTUS	start_codon	10429352	10429354	.	+	0	transcript_id "Ledus.S5G106100.t1"; gene_id "Ledus.S5G106100"
Ledus.S5	AUGUSTUS	CDS	10429352	10429995	0.9	+	0	transcript_id "Ledus.S5G106100.t1"; gene_id "Ledus.S5G106100"
Ledus.S5	AUGUSTUS	exon	10429352	10429995	.	+	.	transcript_id "Ledus.S5G106100.t1"; gene_id "Ledus.S5G106100"
Ledus.S5	AUGUSTUS	intron	10429996	10430127	.	+	.	transcript_id "Ledus.S5G106100.t1"; gene_id "Ledus.S5G106100"
Ledus.S5	AUGUSTUS	CDS	10430128	10430470	1	+	1	transcript_id "Ledus.S5G106100.t1"; gene_id "Ledus.S5G106100"
Ledus.S5	AUGUSTUS	exon	10430128	10430470	.	+	.	transcript_id "Ledus.S5G106100.t1"; gene_id "Ledus.S5G106100"
Ledus.S5	AUGUSTUS	stop_codon	10430471	10430473	.	+	0	transcript_id "Ledus.S5G106100.t1"; gene_id "Ledus.S5G106100"
# This transcript jg3234.t2 is derived from g669.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3234.t3 is derived from g669.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3235.t1 is derived from g670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7055441	7056237	.	+	.	Ledus.S1G065600
Ledus.S1	AUGUSTUS	transcript	7055441	7056237	.	+	.	transcript_id "Ledus.S1G065600.t1"; gene_id "Ledus.S1G065600"
Ledus.S1	AUGUSTUS	start_codon	7055441	7055443	.	+	0	transcript_id "Ledus.S1G065600.t1"; gene_id "Ledus.S1G065600"
Ledus.S1	AUGUSTUS	CDS	7055441	7055524	0.76	+	0	transcript_id "Ledus.S1G065600.t1"; gene_id "Ledus.S1G065600"
Ledus.S1	AUGUSTUS	exon	7055441	7055524	.	+	.	transcript_id "Ledus.S1G065600.t1"; gene_id "Ledus.S1G065600"
Ledus.S1	AUGUSTUS	intron	7055525	7055643	.	+	.	transcript_id "Ledus.S1G065600.t1"; gene_id "Ledus.S1G065600"
Ledus.S1	AUGUSTUS	CDS	7055644	7056237	1	+	0	transcript_id "Ledus.S1G065600.t1"; gene_id "Ledus.S1G065600"
Ledus.S1	AUGUSTUS	exon	7055644	7056237	.	+	.	transcript_id "Ledus.S1G065600.t1"; gene_id "Ledus.S1G065600"
Ledus.S1	AUGUSTUS	stop_codon	7056238	7056240	.	+	0	transcript_id "Ledus.S1G065600.t1"; gene_id "Ledus.S1G065600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7364.t1 is derived from g12035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1471769	1472091	.	+	.	Ledus.S5G014200
Ledus.S5	AUGUSTUS	transcript	1471769	1472091	.	+	.	transcript_id "Ledus.S5G014200.t1"; gene_id "Ledus.S5G014200"
Ledus.S5	AUGUSTUS	start_codon	1471769	1471771	.	+	0	transcript_id "Ledus.S5G014200.t1"; gene_id "Ledus.S5G014200"
Ledus.S5	AUGUSTUS	CDS	1471769	1471990	0.49	+	0	transcript_id "Ledus.S5G014200.t1"; gene_id "Ledus.S5G014200"
Ledus.S5	AUGUSTUS	exon	1471769	1471990	.	+	.	transcript_id "Ledus.S5G014200.t1"; gene_id "Ledus.S5G014200"
Ledus.S5	AUGUSTUS	intron	1471991	1472076	.	+	.	transcript_id "Ledus.S5G014200.t1"; gene_id "Ledus.S5G014200"
Ledus.S5	AUGUSTUS	CDS	1472077	1472091	0.52	+	0	transcript_id "Ledus.S5G014200.t1"; gene_id "Ledus.S5G014200"
Ledus.S5	AUGUSTUS	exon	1472077	1472091	.	+	.	transcript_id "Ledus.S5G014200.t1"; gene_id "Ledus.S5G014200"
Ledus.S5	AUGUSTUS	stop_codon	1472092	1472094	.	+	0	transcript_id "Ledus.S5G014200.t1"; gene_id "Ledus.S5G014200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4052.t1 is derived from g1488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14353275	14353529	.	-	.	Ledus.S1G147300
Ledus.S1	AUGUSTUS	transcript	14353275	14353529	.	-	.	transcript_id "Ledus.S1G147300.t1"; gene_id "Ledus.S1G147300"
Ledus.S1	AUGUSTUS	stop_codon	14352910	14352912	.	-	0	transcript_id "Ledus.S1G147300.t1"; gene_id "Ledus.S1G147300"
Ledus.S1	AUGUSTUS	CDS	14353275	14353529	0.64	-	0	transcript_id "Ledus.S1G147300.t1"; gene_id "Ledus.S1G147300"
Ledus.S1	AUGUSTUS	exon	14353275	14353529	.	-	.	transcript_id "Ledus.S1G147300.t1"; gene_id "Ledus.S1G147300"
Ledus.S1	AUGUSTUS	start_codon	14353527	14353529	.	-	0	transcript_id "Ledus.S1G147300.t1"; gene_id "Ledus.S1G147300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12498.t1 is derived from g6119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12389386	12389998	.	-	.	Ledus.S4G165400
Ledus.S4	AUGUSTUS	transcript	12389386	12389998	.	-	.	transcript_id "Ledus.S4G165400.t1"; gene_id "Ledus.S4G165400"
Ledus.S4	AUGUSTUS	stop_codon	12389383	12389385	.	-	0	transcript_id "Ledus.S4G165400.t1"; gene_id "Ledus.S4G165400"
Ledus.S4	AUGUSTUS	CDS	12389386	12389715	1	-	0	transcript_id "Ledus.S4G165400.t1"; gene_id "Ledus.S4G165400"
Ledus.S4	AUGUSTUS	exon	12389386	12389715	.	-	.	transcript_id "Ledus.S4G165400.t1"; gene_id "Ledus.S4G165400"
Ledus.S4	AUGUSTUS	intron	12389716	12389932	.	-	.	transcript_id "Ledus.S4G165400.t1"; gene_id "Ledus.S4G165400"
Ledus.S4	AUGUSTUS	CDS	12389933	12389998	0.98	-	0	transcript_id "Ledus.S4G165400.t1"; gene_id "Ledus.S4G165400"
Ledus.S4	AUGUSTUS	exon	12389933	12389998	.	-	.	transcript_id "Ledus.S4G165400.t1"; gene_id "Ledus.S4G165400"
Ledus.S4	AUGUSTUS	start_codon	12389996	12389998	.	-	0	transcript_id "Ledus.S4G165400.t1"; gene_id "Ledus.S4G165400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3710.t1 is derived from g1146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11083426	11085575	.	+	.	Ledus.S1G113100
Ledus.S1	AUGUSTUS	transcript	11083426	11085575	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	start_codon	11083426	11083428	.	+	0	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	CDS	11083426	11083633	0.97	+	0	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	exon	11083426	11083633	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	intron	11083634	11083732	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	CDS	11083733	11083845	0.91	+	2	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	exon	11083733	11083845	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	intron	11083846	11083965	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	CDS	11083966	11084084	0.92	+	0	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	exon	11083966	11084084	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	intron	11084085	11084151	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	CDS	11084152	11084257	0.99	+	1	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	exon	11084152	11084257	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	intron	11084258	11084362	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	CDS	11084363	11084445	0.99	+	0	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	exon	11084363	11084445	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	intron	11084446	11084652	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	CDS	11084653	11084716	1	+	1	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	exon	11084653	11084716	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	intron	11084717	11084936	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	CDS	11084937	11085051	1	+	0	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	exon	11084937	11085051	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	intron	11085052	11085189	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	CDS	11085190	11085347	1	+	2	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	exon	11085190	11085347	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	intron	11085348	11085443	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	CDS	11085444	11085575	0.79	+	0	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	exon	11085444	11085575	.	+	.	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
Ledus.S1	AUGUSTUS	stop_codon	11085576	11085578	.	+	0	transcript_id "Ledus.S1G113100.t1"; gene_id "Ledus.S1G113100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3713.t1 is derived from g1149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11098849	11100189	.	+	.	Ledus.S1G113400
Ledus.S1	AUGUSTUS	transcript	11098849	11100189	.	+	.	transcript_id "Ledus.S1G113400.t1"; gene_id "Ledus.S1G113400"
Ledus.S1	AUGUSTUS	start_codon	11098849	11098851	.	+	0	transcript_id "Ledus.S1G113400.t1"; gene_id "Ledus.S1G113400"
Ledus.S1	AUGUSTUS	CDS	11098849	11100189	1	+	0	transcript_id "Ledus.S1G113400.t1"; gene_id "Ledus.S1G113400"
Ledus.S1	AUGUSTUS	exon	11098849	11100189	.	+	.	transcript_id "Ledus.S1G113400.t1"; gene_id "Ledus.S1G113400"
Ledus.S1	AUGUSTUS	stop_codon	11100190	11100192	.	+	0	transcript_id "Ledus.S1G113400.t1"; gene_id "Ledus.S1G113400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4217.t1 is derived from g1653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15619124	15620805	.	-	.	Ledus.S1G163800
Ledus.S1	AUGUSTUS	transcript	15619124	15620805	.	-	.	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	stop_codon	15619121	15619123	.	-	0	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	CDS	15619124	15619156	0.81	-	0	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	exon	15619124	15619156	.	-	.	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	intron	15619157	15619313	.	-	.	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	CDS	15619314	15619504	0.94	-	2	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	exon	15619314	15619504	.	-	.	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	intron	15619505	15619699	.	-	.	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	CDS	15619700	15620012	0.94	-	0	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	exon	15619700	15620012	.	-	.	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	intron	15620013	15620148	.	-	.	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	CDS	15620149	15620805	0.81	-	0	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	exon	15620149	15620805	.	-	.	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
Ledus.S1	AUGUSTUS	start_codon	15620803	15620805	.	-	0	transcript_id "Ledus.S1G163800.t1"; gene_id "Ledus.S1G163800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2292.t1 is derived from g9155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17051027	17053889	.	+	.	Ledus.S2G217400
Ledus.S2	AUGUSTUS	transcript	17051027	17053889	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	start_codon	17051027	17051029	.	+	0	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	CDS	17051027	17051159	0.31	+	0	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	exon	17051027	17051159	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	intron	17051160	17051407	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	CDS	17051408	17051842	0.3	+	2	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	exon	17051408	17051842	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	intron	17051843	17051931	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	CDS	17051932	17052123	0.99	+	2	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	exon	17051932	17052123	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	intron	17052124	17052230	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	CDS	17052231	17052567	0.93	+	2	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	exon	17052231	17052567	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	intron	17052568	17052662	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	CDS	17052663	17052880	1	+	1	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	exon	17052663	17052880	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	intron	17052881	17052978	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	CDS	17052979	17053169	0.98	+	2	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	exon	17052979	17053169	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	intron	17053170	17053265	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	CDS	17053266	17053547	1	+	0	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	exon	17053266	17053547	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	intron	17053548	17053730	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	CDS	17053731	17053889	1	+	0	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	exon	17053731	17053889	.	+	.	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
Ledus.S2	AUGUSTUS	stop_codon	17053890	17053892	.	+	0	transcript_id "Ledus.S2G217400.t1"; gene_id "Ledus.S2G217400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7242.t1 is derived from g11913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	224331	226370	.	+	.	Ledus.S5G002000
Ledus.S5	AUGUSTUS	transcript	224331	226370	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	start_codon	224331	224333	.	+	0	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	224331	224611	0.94	+	0	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	224331	224611	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	224612	224700	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	224701	224805	1	+	1	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	224701	224805	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	224806	224974	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	224975	225056	1	+	1	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	224975	225056	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	225057	225197	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	225198	225279	1	+	0	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	225198	225279	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	225280	225471	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	225472	225511	1	+	2	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	225472	225511	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	225512	225602	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	225603	225737	1	+	1	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	225603	225737	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	225738	225883	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	225884	226021	1	+	1	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	225884	226021	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	226022	226105	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	226106	226370	1	+	1	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	226106	226370	.	+	.	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	stop_codon	226371	226373	.	+	0	transcript_id "Ledus.S5G002000.t1"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	transcript	224341	226370	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	start_codon	224341	224343	.	+	0	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	224341	224487	0.5	+	0	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	224341	224487	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	224488	224586	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	224587	224611	0.87	+	0	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	224587	224611	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	224612	224711	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	224712	224805	1	+	2	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	224712	224805	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	224806	224974	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	224975	225056	1	+	1	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	224975	225056	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	225057	225197	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	225198	225279	1	+	0	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	225198	225279	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	225280	225471	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	225472	225511	1	+	2	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	225472	225511	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	225512	225602	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	225603	225737	1	+	1	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	225603	225737	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	225738	225883	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	225884	226021	1	+	1	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	225884	226021	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	intron	226022	226105	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	CDS	226106	226370	1	+	1	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	exon	226106	226370	.	+	.	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
Ledus.S5	AUGUSTUS	stop_codon	226371	226373	.	+	0	transcript_id "Ledus.S5G002000.t2"; gene_id "Ledus.S5G002000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2994.t1 is derived from g429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5193558	5194493	.	+	.	Ledus.S1G041500
Ledus.S1	AUGUSTUS	transcript	5193558	5194493	.	+	.	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	start_codon	5193558	5193560	.	+	0	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	CDS	5193558	5193615	1	+	0	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	exon	5193558	5193615	.	+	.	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	intron	5193616	5193709	.	+	.	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	CDS	5193710	5193818	1	+	2	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	exon	5193710	5193818	.	+	.	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	intron	5193819	5193941	.	+	.	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	CDS	5193942	5194019	1	+	1	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	exon	5193942	5194019	.	+	.	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	intron	5194020	5194140	.	+	.	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	CDS	5194141	5194174	1	+	1	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	exon	5194141	5194174	.	+	.	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	intron	5194175	5194270	.	+	.	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	CDS	5194271	5194339	1	+	0	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	exon	5194271	5194339	.	+	.	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	intron	5194340	5194421	.	+	.	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	CDS	5194422	5194493	0.87	+	0	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	exon	5194422	5194493	.	+	.	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
Ledus.S1	AUGUSTUS	stop_codon	5194494	5194496	.	+	0	transcript_id "Ledus.S1G041500.t1"; gene_id "Ledus.S1G041500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2079.t1 is derived from g8942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14611987	14612397	.	+	.	Ledus.S2G196100
Ledus.S2	AUGUSTUS	transcript	14611987	14612397	.	+	.	transcript_id "Ledus.S2G196100.t1"; gene_id "Ledus.S2G196100"
Ledus.S2	AUGUSTUS	start_codon	14611987	14611989	.	+	0	transcript_id "Ledus.S2G196100.t1"; gene_id "Ledus.S2G196100"
Ledus.S2	AUGUSTUS	CDS	14611987	14612397	0.41	+	0	transcript_id "Ledus.S2G196100.t1"; gene_id "Ledus.S2G196100"
Ledus.S2	AUGUSTUS	exon	14611987	14612397	.	+	.	transcript_id "Ledus.S2G196100.t1"; gene_id "Ledus.S2G196100"
Ledus.S2	AUGUSTUS	stop_codon	14612398	14612400	.	+	0	transcript_id "Ledus.S2G196100.t1"; gene_id "Ledus.S2G196100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9075.t1 is derived from g10105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4376134	4377330	.	+	.	Ledus.S3G055200
Ledus.S3	AUGUSTUS	transcript	4376134	4377330	.	+	.	transcript_id "Ledus.S3G055200.t1"; gene_id "Ledus.S3G055200"
Ledus.S3	AUGUSTUS	start_codon	4376134	4376136	.	+	0	transcript_id "Ledus.S3G055200.t1"; gene_id "Ledus.S3G055200"
Ledus.S3	AUGUSTUS	CDS	4376134	4376817	0.66	+	0	transcript_id "Ledus.S3G055200.t1"; gene_id "Ledus.S3G055200"
Ledus.S3	AUGUSTUS	exon	4376134	4376817	.	+	.	transcript_id "Ledus.S3G055200.t1"; gene_id "Ledus.S3G055200"
Ledus.S3	AUGUSTUS	intron	4376818	4376898	.	+	.	transcript_id "Ledus.S3G055200.t1"; gene_id "Ledus.S3G055200"
Ledus.S3	AUGUSTUS	CDS	4376899	4377330	0.69	+	0	transcript_id "Ledus.S3G055200.t1"; gene_id "Ledus.S3G055200"
Ledus.S3	AUGUSTUS	exon	4376899	4377330	.	+	.	transcript_id "Ledus.S3G055200.t1"; gene_id "Ledus.S3G055200"
Ledus.S3	AUGUSTUS	stop_codon	4377331	4377333	.	+	0	transcript_id "Ledus.S3G055200.t1"; gene_id "Ledus.S3G055200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6418.t1 is derived from g3861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31155542	31156527	.	-	.	Ledus.S1G383900
Ledus.S1	AUGUSTUS	transcript	31155542	31156527	.	-	.	transcript_id "Ledus.S1G383900.t1"; gene_id "Ledus.S1G383900"
Ledus.S1	AUGUSTUS	stop_codon	31155539	31155541	.	-	0	transcript_id "Ledus.S1G383900.t1"; gene_id "Ledus.S1G383900"
Ledus.S1	AUGUSTUS	CDS	31155542	31155622	0.78	-	0	transcript_id "Ledus.S1G383900.t1"; gene_id "Ledus.S1G383900"
Ledus.S1	AUGUSTUS	exon	31155542	31155622	.	-	.	transcript_id "Ledus.S1G383900.t1"; gene_id "Ledus.S1G383900"
Ledus.S1	AUGUSTUS	intron	31155623	31155848	.	-	.	transcript_id "Ledus.S1G383900.t1"; gene_id "Ledus.S1G383900"
Ledus.S1	AUGUSTUS	CDS	31155849	31155957	1	-	1	transcript_id "Ledus.S1G383900.t1"; gene_id "Ledus.S1G383900"
Ledus.S1	AUGUSTUS	exon	31155849	31155957	.	-	.	transcript_id "Ledus.S1G383900.t1"; gene_id "Ledus.S1G383900"
Ledus.S1	AUGUSTUS	intron	31155958	31156339	.	-	.	transcript_id "Ledus.S1G383900.t1"; gene_id "Ledus.S1G383900"
Ledus.S1	AUGUSTUS	CDS	31156340	31156527	0.55	-	0	transcript_id "Ledus.S1G383900.t1"; gene_id "Ledus.S1G383900"
Ledus.S1	AUGUSTUS	exon	31156340	31156527	.	-	.	transcript_id "Ledus.S1G383900.t1"; gene_id "Ledus.S1G383900"
Ledus.S1	AUGUSTUS	start_codon	31156525	31156527	.	-	0	transcript_id "Ledus.S1G383900.t1"; gene_id "Ledus.S1G383900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9088.t1 is derived from g10118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4459986	4463552	.	+	.	Ledus.S3G056500
Ledus.S3	AUGUSTUS	transcript	4459986	4463552	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	start_codon	4459986	4459988	.	+	0	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	CDS	4459986	4460432	0.99	+	0	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	exon	4459986	4460432	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	intron	4460433	4460512	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	CDS	4460513	4460797	1	+	0	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	exon	4460513	4460797	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	intron	4460798	4460966	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	CDS	4460967	4461284	1	+	0	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	exon	4460967	4461284	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	intron	4461285	4461401	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	CDS	4461402	4461629	0.99	+	0	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	exon	4461402	4461629	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	intron	4461630	4461788	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	CDS	4461789	4461889	1	+	0	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	exon	4461789	4461889	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	intron	4461890	4461972	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	CDS	4461973	4462084	1	+	1	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	exon	4461973	4462084	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	intron	4462085	4462233	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	CDS	4462234	4462911	1	+	0	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	exon	4462234	4462911	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	intron	4462912	4463150	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	CDS	4463151	4463552	0.98	+	0	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	exon	4463151	4463552	.	+	.	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
Ledus.S3	AUGUSTUS	stop_codon	4463553	4463555	.	+	0	transcript_id "Ledus.S3G056500.t1"; gene_id "Ledus.S3G056500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2003.t1 is derived from g8866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14137350	14138334	.	+	.	Ledus.S2G188500
Ledus.S2	AUGUSTUS	transcript	14137350	14138334	.	+	.	transcript_id "Ledus.S2G188500.t1"; gene_id "Ledus.S2G188500"
Ledus.S2	AUGUSTUS	start_codon	14137350	14137352	.	+	0	transcript_id "Ledus.S2G188500.t1"; gene_id "Ledus.S2G188500"
Ledus.S2	AUGUSTUS	CDS	14137350	14137456	0.51	+	0	transcript_id "Ledus.S2G188500.t1"; gene_id "Ledus.S2G188500"
Ledus.S2	AUGUSTUS	exon	14137350	14137456	.	+	.	transcript_id "Ledus.S2G188500.t1"; gene_id "Ledus.S2G188500"
Ledus.S2	AUGUSTUS	intron	14137457	14137775	.	+	.	transcript_id "Ledus.S2G188500.t1"; gene_id "Ledus.S2G188500"
Ledus.S2	AUGUSTUS	CDS	14137776	14138334	0.6	+	1	transcript_id "Ledus.S2G188500.t1"; gene_id "Ledus.S2G188500"
Ledus.S2	AUGUSTUS	exon	14137776	14138334	.	+	.	transcript_id "Ledus.S2G188500.t1"; gene_id "Ledus.S2G188500"
Ledus.S2	AUGUSTUS	stop_codon	14138335	14138337	.	+	0	transcript_id "Ledus.S2G188500.t1"; gene_id "Ledus.S2G188500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8769.t1 is derived from g9799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1898002	1901055	.	+	.	Ledus.S3G024600
Ledus.S3	AUGUSTUS	transcript	1898002	1901055	.	+	.	transcript_id "Ledus.S3G024600.t1"; gene_id "Ledus.S3G024600"
Ledus.S3	AUGUSTUS	start_codon	1898002	1898004	.	+	0	transcript_id "Ledus.S3G024600.t1"; gene_id "Ledus.S3G024600"
Ledus.S3	AUGUSTUS	CDS	1898002	1901055	0.87	+	0	transcript_id "Ledus.S3G024600.t1"; gene_id "Ledus.S3G024600"
Ledus.S3	AUGUSTUS	exon	1898002	1901055	.	+	.	transcript_id "Ledus.S3G024600.t1"; gene_id "Ledus.S3G024600"
Ledus.S3	AUGUSTUS	stop_codon	1901056	1901058	.	+	0	transcript_id "Ledus.S3G024600.t1"; gene_id "Ledus.S3G024600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11274.t1 is derived from g4892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3135388	3136619	.	+	.	Ledus.S4G043000
Ledus.S4	AUGUSTUS	transcript	3135388	3136619	.	+	.	transcript_id "Ledus.S4G043000.t1"; gene_id "Ledus.S4G043000"
Ledus.S4	AUGUSTUS	start_codon	3135388	3135390	.	+	0	transcript_id "Ledus.S4G043000.t1"; gene_id "Ledus.S4G043000"
Ledus.S4	AUGUSTUS	CDS	3135388	3135774	0.99	+	0	transcript_id "Ledus.S4G043000.t1"; gene_id "Ledus.S4G043000"
Ledus.S4	AUGUSTUS	exon	3135388	3135774	.	+	.	transcript_id "Ledus.S4G043000.t1"; gene_id "Ledus.S4G043000"
Ledus.S4	AUGUSTUS	intron	3135775	3135851	.	+	.	transcript_id "Ledus.S4G043000.t1"; gene_id "Ledus.S4G043000"
Ledus.S4	AUGUSTUS	CDS	3135852	3136619	1	+	0	transcript_id "Ledus.S4G043000.t1"; gene_id "Ledus.S4G043000"
Ledus.S4	AUGUSTUS	exon	3135852	3136619	.	+	.	transcript_id "Ledus.S4G043000.t1"; gene_id "Ledus.S4G043000"
Ledus.S4	AUGUSTUS	stop_codon	3136620	3136622	.	+	0	transcript_id "Ledus.S4G043000.t1"; gene_id "Ledus.S4G043000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8928.t1 is derived from g9958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3194553	3194822	.	-	.	Ledus.S3G040500
Ledus.S3	AUGUSTUS	transcript	3194553	3194822	.	-	.	transcript_id "Ledus.S3G040500.t1"; gene_id "Ledus.S3G040500"
Ledus.S3	AUGUSTUS	stop_codon	3194550	3194552	.	-	0	transcript_id "Ledus.S3G040500.t1"; gene_id "Ledus.S3G040500"
Ledus.S3	AUGUSTUS	CDS	3194553	3194822	1	-	0	transcript_id "Ledus.S3G040500.t1"; gene_id "Ledus.S3G040500"
Ledus.S3	AUGUSTUS	exon	3194553	3194822	.	-	.	transcript_id "Ledus.S3G040500.t1"; gene_id "Ledus.S3G040500"
Ledus.S3	AUGUSTUS	start_codon	3194820	3194822	.	-	0	transcript_id "Ledus.S3G040500.t1"; gene_id "Ledus.S3G040500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg952.t1 is derived from g7813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6286479	6287140	.	-	.	Ledus.S2G083400
Ledus.S2	AUGUSTUS	transcript	6286479	6287140	.	-	.	transcript_id "Ledus.S2G083400.t1"; gene_id "Ledus.S2G083400"
Ledus.S2	AUGUSTUS	stop_codon	6286476	6286478	.	-	0	transcript_id "Ledus.S2G083400.t1"; gene_id "Ledus.S2G083400"
Ledus.S2	AUGUSTUS	CDS	6286479	6286593	0.96	-	1	transcript_id "Ledus.S2G083400.t1"; gene_id "Ledus.S2G083400"
Ledus.S2	AUGUSTUS	exon	6286479	6286593	.	-	.	transcript_id "Ledus.S2G083400.t1"; gene_id "Ledus.S2G083400"
Ledus.S2	AUGUSTUS	intron	6286594	6286877	.	-	.	transcript_id "Ledus.S2G083400.t1"; gene_id "Ledus.S2G083400"
Ledus.S2	AUGUSTUS	CDS	6286878	6287140	0.34	-	0	transcript_id "Ledus.S2G083400.t1"; gene_id "Ledus.S2G083400"
Ledus.S2	AUGUSTUS	exon	6286878	6287140	.	-	.	transcript_id "Ledus.S2G083400.t1"; gene_id "Ledus.S2G083400"
Ledus.S2	AUGUSTUS	start_codon	6287138	6287140	.	-	0	transcript_id "Ledus.S2G083400.t1"; gene_id "Ledus.S2G083400"
# This transcript jg12676.t2 is derived from g6298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12677.t1 is derived from g6299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13835593	13836565	.	-	.	Ledus.S4G183300
Ledus.S4	AUGUSTUS	transcript	13835593	13836565	.	-	.	transcript_id "Ledus.S4G183300.t1"; gene_id "Ledus.S4G183300"
Ledus.S4	AUGUSTUS	stop_codon	13835590	13835592	.	-	0	transcript_id "Ledus.S4G183300.t1"; gene_id "Ledus.S4G183300"
Ledus.S4	AUGUSTUS	CDS	13835593	13835660	0.5	-	2	transcript_id "Ledus.S4G183300.t1"; gene_id "Ledus.S4G183300"
Ledus.S4	AUGUSTUS	exon	13835593	13835660	.	-	.	transcript_id "Ledus.S4G183300.t1"; gene_id "Ledus.S4G183300"
Ledus.S4	AUGUSTUS	intron	13835661	13835742	.	-	.	transcript_id "Ledus.S4G183300.t1"; gene_id "Ledus.S4G183300"
Ledus.S4	AUGUSTUS	CDS	13835743	13835794	0.51	-	0	transcript_id "Ledus.S4G183300.t1"; gene_id "Ledus.S4G183300"
Ledus.S4	AUGUSTUS	exon	13835743	13835794	.	-	.	transcript_id "Ledus.S4G183300.t1"; gene_id "Ledus.S4G183300"
Ledus.S4	AUGUSTUS	intron	13835795	13835989	.	-	.	transcript_id "Ledus.S4G183300.t1"; gene_id "Ledus.S4G183300"
Ledus.S4	AUGUSTUS	CDS	13835990	13836565	0.26	-	0	transcript_id "Ledus.S4G183300.t1"; gene_id "Ledus.S4G183300"
Ledus.S4	AUGUSTUS	exon	13835990	13836565	.	-	.	transcript_id "Ledus.S4G183300.t1"; gene_id "Ledus.S4G183300"
Ledus.S4	AUGUSTUS	start_codon	13836563	13836565	.	-	0	transcript_id "Ledus.S4G183300.t1"; gene_id "Ledus.S4G183300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9232.t1 is derived from g10262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5525103	5528006	.	-	.	Ledus.S3G070900
Ledus.S3	AUGUSTUS	transcript	5525103	5528006	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	stop_codon	5525100	5525102	.	-	0	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	CDS	5525103	5525217	1	-	1	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	exon	5525103	5525217	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	intron	5525218	5525306	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	CDS	5525307	5525406	1	-	2	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	exon	5525307	5525406	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	intron	5525407	5525485	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	CDS	5525486	5525654	1	-	0	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	exon	5525486	5525654	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	intron	5525655	5525807	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	CDS	5525808	5526207	0.98	-	1	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	exon	5525808	5526207	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	intron	5526208	5526311	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	CDS	5526312	5526578	1	-	1	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	exon	5526312	5526578	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	intron	5526579	5526682	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	CDS	5526683	5526801	1	-	0	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	exon	5526683	5526801	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	intron	5526802	5526890	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	CDS	5526891	5527391	0.58	-	0	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	exon	5526891	5527391	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	intron	5527392	5527592	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	CDS	5527593	5528006	0.59	-	0	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	exon	5527593	5528006	.	-	.	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
Ledus.S3	AUGUSTUS	start_codon	5528004	5528006	.	-	0	transcript_id "Ledus.S3G070900.t1"; gene_id "Ledus.S3G070900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6223.t1 is derived from g3666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29740941	29745112	.	+	.	Ledus.S1G364400
Ledus.S1	AUGUSTUS	transcript	29740941	29745112	.	+	.	transcript_id "Ledus.S1G364400.t1"; gene_id "Ledus.S1G364400"
Ledus.S1	AUGUSTUS	start_codon	29740941	29740943	.	+	0	transcript_id "Ledus.S1G364400.t1"; gene_id "Ledus.S1G364400"
Ledus.S1	AUGUSTUS	CDS	29740941	29741249	0.68	+	0	transcript_id "Ledus.S1G364400.t1"; gene_id "Ledus.S1G364400"
Ledus.S1	AUGUSTUS	exon	29740941	29741249	.	+	.	transcript_id "Ledus.S1G364400.t1"; gene_id "Ledus.S1G364400"
Ledus.S1	AUGUSTUS	intron	29741250	29741373	.	+	.	transcript_id "Ledus.S1G364400.t1"; gene_id "Ledus.S1G364400"
Ledus.S1	AUGUSTUS	CDS	29741374	29741505	0.59	+	0	transcript_id "Ledus.S1G364400.t1"; gene_id "Ledus.S1G364400"
Ledus.S1	AUGUSTUS	exon	29741374	29741505	.	+	.	transcript_id "Ledus.S1G364400.t1"; gene_id "Ledus.S1G364400"
Ledus.S1	AUGUSTUS	intron	29741506	29741599	.	+	.	transcript_id "Ledus.S1G364400.t1"; gene_id "Ledus.S1G364400"
Ledus.S1	AUGUSTUS	CDS	29741600	29745112	1	+	0	transcript_id "Ledus.S1G364400.t1"; gene_id "Ledus.S1G364400"
Ledus.S1	AUGUSTUS	exon	29741600	29745112	.	+	.	transcript_id "Ledus.S1G364400.t1"; gene_id "Ledus.S1G364400"
Ledus.S1	AUGUSTUS	stop_codon	29745113	29745115	.	+	0	transcript_id "Ledus.S1G364400.t1"; gene_id "Ledus.S1G364400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5965.t1 is derived from g3408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28064698	28065537	.	-	.	Ledus.S1G338600
Ledus.S1	AUGUSTUS	transcript	28064698	28065537	.	-	.	transcript_id "Ledus.S1G338600.t1"; gene_id "Ledus.S1G338600"
Ledus.S1	AUGUSTUS	stop_codon	28064695	28064697	.	-	0	transcript_id "Ledus.S1G338600.t1"; gene_id "Ledus.S1G338600"
Ledus.S1	AUGUSTUS	CDS	28064698	28064778	0.79	-	0	transcript_id "Ledus.S1G338600.t1"; gene_id "Ledus.S1G338600"
Ledus.S1	AUGUSTUS	exon	28064698	28064778	.	-	.	transcript_id "Ledus.S1G338600.t1"; gene_id "Ledus.S1G338600"
Ledus.S1	AUGUSTUS	intron	28064779	28064880	.	-	.	transcript_id "Ledus.S1G338600.t1"; gene_id "Ledus.S1G338600"
Ledus.S1	AUGUSTUS	CDS	28064881	28065007	0.93	-	1	transcript_id "Ledus.S1G338600.t1"; gene_id "Ledus.S1G338600"
Ledus.S1	AUGUSTUS	exon	28064881	28065007	.	-	.	transcript_id "Ledus.S1G338600.t1"; gene_id "Ledus.S1G338600"
Ledus.S1	AUGUSTUS	intron	28065008	28065088	.	-	.	transcript_id "Ledus.S1G338600.t1"; gene_id "Ledus.S1G338600"
Ledus.S1	AUGUSTUS	CDS	28065089	28065537	0.8	-	0	transcript_id "Ledus.S1G338600.t1"; gene_id "Ledus.S1G338600"
Ledus.S1	AUGUSTUS	exon	28065089	28065537	.	-	.	transcript_id "Ledus.S1G338600.t1"; gene_id "Ledus.S1G338600"
Ledus.S1	AUGUSTUS	start_codon	28065535	28065537	.	-	0	transcript_id "Ledus.S1G338600.t1"; gene_id "Ledus.S1G338600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9809.t1 is derived from g10839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9986937	9989449	.	+	.	Ledus.S3G128600
Ledus.S3	AUGUSTUS	transcript	9986937	9989449	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	start_codon	9986937	9986939	.	+	0	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	CDS	9986937	9987062	0.55	+	0	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	exon	9986937	9987062	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	intron	9987063	9987151	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	CDS	9987152	9987227	0.59	+	0	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	exon	9987152	9987227	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	intron	9987228	9987821	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	CDS	9987822	9987924	1	+	2	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	exon	9987822	9987924	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	intron	9987925	9988051	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	CDS	9988052	9988149	1	+	1	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	exon	9988052	9988149	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	intron	9988150	9988321	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	CDS	9988322	9988422	1	+	2	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	exon	9988322	9988422	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	intron	9988423	9989087	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	CDS	9989088	9989165	1	+	0	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	exon	9989088	9989165	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	intron	9989166	9989374	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	CDS	9989375	9989449	0.8	+	0	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	exon	9989375	9989449	.	+	.	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
Ledus.S3	AUGUSTUS	stop_codon	9989450	9989452	.	+	0	transcript_id "Ledus.S3G128600.t1"; gene_id "Ledus.S3G128600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1232.t1 is derived from g8093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8762266	8764126	.	-	.	Ledus.S2G111400
Ledus.S2	AUGUSTUS	transcript	8762266	8764126	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	stop_codon	8762263	8762265	.	-	0	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	CDS	8762266	8762390	0.72	-	2	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	exon	8762266	8762390	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	intron	8762391	8762477	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	CDS	8762478	8762537	1	-	2	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	exon	8762478	8762537	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	intron	8762538	8762626	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	CDS	8762627	8762706	1	-	1	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	exon	8762627	8762706	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	intron	8762707	8762800	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	CDS	8762801	8762895	1	-	0	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	exon	8762801	8762895	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	intron	8762896	8762966	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	CDS	8762967	8763080	1	-	0	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	exon	8762967	8763080	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	intron	8763081	8763165	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	CDS	8763166	8763243	1	-	0	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	exon	8763166	8763243	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	intron	8763244	8763328	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	CDS	8763329	8763398	1	-	1	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	exon	8763329	8763398	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	intron	8763399	8763493	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	CDS	8763494	8763606	1	-	0	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	exon	8763494	8763606	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	intron	8763607	8763698	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	CDS	8763699	8763800	1	-	0	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	exon	8763699	8763800	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	intron	8763801	8764018	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	CDS	8764019	8764126	0.99	-	0	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	exon	8764019	8764126	.	-	.	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
Ledus.S2	AUGUSTUS	start_codon	8764124	8764126	.	-	0	transcript_id "Ledus.S2G111400.t1"; gene_id "Ledus.S2G111400"
# This transcript jg10207.t2 is derived from g11237.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10208.t1 is derived from g11238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13575525	13577938	.	-	.	Ledus.S3G168500
Ledus.S3	AUGUSTUS	transcript	13575525	13577938	.	-	.	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	stop_codon	13575522	13575524	.	-	0	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	CDS	13575525	13576386	1	-	1	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	exon	13575525	13576386	.	-	.	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	intron	13576387	13576472	.	-	.	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	CDS	13576473	13576729	0.72	-	0	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	exon	13576473	13576729	.	-	.	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	intron	13576730	13576844	.	-	.	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	CDS	13576845	13577150	0.64	-	0	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	exon	13576845	13577150	.	-	.	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	intron	13577151	13577217	.	-	.	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	CDS	13577218	13577435	0.83	-	2	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	exon	13577218	13577435	.	-	.	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	intron	13577436	13577535	.	-	.	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	CDS	13577536	13577632	0.86	-	0	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	exon	13577536	13577632	.	-	.	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	intron	13577633	13577737	.	-	.	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	CDS	13577738	13577938	0.95	-	0	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	exon	13577738	13577938	.	-	.	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
Ledus.S3	AUGUSTUS	start_codon	13577936	13577938	.	-	0	transcript_id "Ledus.S3G168500.t1"; gene_id "Ledus.S3G168500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7499.t1 is derived from g12170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3459670	3461825	.	-	.	Ledus.S5G027700
Ledus.S5	AUGUSTUS	transcript	3459670	3461825	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	stop_codon	3459667	3459669	.	-	0	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	CDS	3459670	3459746	0.22	-	2	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	exon	3459670	3459746	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	intron	3459747	3459875	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	CDS	3459876	3460003	0.2	-	1	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	exon	3459876	3460003	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	intron	3460004	3460096	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	CDS	3460097	3460252	0.83	-	1	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	exon	3460097	3460252	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	intron	3460253	3460380	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	CDS	3460381	3460437	0.89	-	1	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	exon	3460381	3460437	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	intron	3460438	3460610	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	CDS	3460611	3461216	0.89	-	1	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	exon	3460611	3461216	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	intron	3461217	3461327	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	CDS	3461328	3461607	0.63	-	2	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	exon	3461328	3461607	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	intron	3461608	3461752	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	CDS	3461753	3461825	0.8	-	0	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	exon	3461753	3461825	.	-	.	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
Ledus.S5	AUGUSTUS	start_codon	3461823	3461825	.	-	0	transcript_id "Ledus.S5G027700.t1"; gene_id "Ledus.S5G027700"
# This transcript jg8625.t2 is derived from g9655.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8625.t3 is derived from g9655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8626.t1 is derived from g9656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	774052	775532	.	+	.	Ledus.S3G010300
Ledus.S3	AUGUSTUS	transcript	774052	775532	.	+	.	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	start_codon	774052	774054	.	+	0	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	CDS	774052	774157	1	+	0	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	exon	774052	774157	.	+	.	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	intron	774158	774245	.	+	.	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	CDS	774246	774418	1	+	2	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	exon	774246	774418	.	+	.	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	intron	774419	774505	.	+	.	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	CDS	774506	774694	0.99	+	0	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	exon	774506	774694	.	+	.	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	intron	774695	774812	.	+	.	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	CDS	774813	774978	0.98	+	0	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	exon	774813	774978	.	+	.	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	intron	774979	775099	.	+	.	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	CDS	775100	775295	0.83	+	2	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	exon	775100	775295	.	+	.	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	intron	775296	775399	.	+	.	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	CDS	775400	775532	0.83	+	1	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	exon	775400	775532	.	+	.	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
Ledus.S3	AUGUSTUS	stop_codon	775533	775535	.	+	0	transcript_id "Ledus.S3G010300.t1"; gene_id "Ledus.S3G010300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8473.t1 is derived from g13145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12071705	12081252	.	+	.	Ledus.S5G125100
Ledus.S5	AUGUSTUS	transcript	12071705	12081252	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	start_codon	12071705	12071707	.	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12071705	12073716	0.73	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12071705	12073716	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12073717	12073984	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12073985	12074183	1	+	1	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12073985	12074183	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12074184	12074308	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12074309	12074368	1	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12074309	12074368	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12074369	12074530	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12074531	12074635	0.98	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12074531	12074635	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12074636	12074741	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12074742	12074882	0.55	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12074742	12074882	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12074883	12075017	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12075018	12075080	1	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12075018	12075080	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12075081	12075254	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12075255	12075482	0.99	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12075255	12075482	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12075483	12075608	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12075609	12075692	1	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12075609	12075692	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12075693	12075826	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12075827	12075984	1	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12075827	12075984	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12075985	12076239	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12076240	12076756	0.95	+	1	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12076240	12076756	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12076757	12076838	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12076839	12077024	1	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12076839	12077024	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12077025	12077118	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12077119	12077178	1	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12077119	12077178	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12077179	12077357	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12077358	12077480	1	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12077358	12077480	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12077481	12077578	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12077579	12077854	1	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12077579	12077854	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12077855	12077940	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12077941	12078006	1	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12077941	12078006	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12078007	12078129	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12078130	12078267	1	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12078130	12078267	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12078268	12078391	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12078392	12079228	1	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12078392	12079228	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12079229	12079358	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12079359	12079642	0.96	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12079359	12079642	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12079643	12079751	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12079752	12079900	0.95	+	1	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12079752	12079900	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12079901	12080078	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12080079	12080338	0.99	+	2	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12080079	12080338	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12080339	12080454	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12080455	12080646	0.99	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12080455	12080646	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12080647	12080752	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12080753	12081022	0.87	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12080753	12081022	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	intron	12081023	12081102	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	CDS	12081103	12081252	0.98	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	exon	12081103	12081252	.	+	.	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
Ledus.S5	AUGUSTUS	stop_codon	12081253	12081255	.	+	0	transcript_id "Ledus.S5G125100.t1"; gene_id "Ledus.S5G125100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1824.t1 is derived from g8687.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12806408	12810045	.	-	.	Ledus.S2G170600
Ledus.S2	AUGUSTUS	transcript	12806408	12810045	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	stop_codon	12806405	12806407	.	-	0	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12806408	12806486	1	-	1	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12806408	12806486	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12806487	12806579	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12806580	12806633	1	-	1	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12806580	12806633	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12806634	12806767	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12806768	12806838	1	-	0	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12806768	12806838	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12806839	12806979	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12806980	12807018	1	-	0	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12806980	12807018	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12807019	12807108	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12807109	12807165	1	-	0	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12807109	12807165	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12807166	12807246	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12807247	12807334	1	-	1	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12807247	12807334	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12807335	12807553	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12807554	12807639	1	-	0	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12807554	12807639	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12807640	12807739	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12807740	12807806	1	-	1	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12807740	12807806	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12807807	12807937	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12807938	12807977	0.95	-	2	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12807938	12807977	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12807978	12808078	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12808079	12808155	1	-	1	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12808079	12808155	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12808156	12808245	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12808246	12808333	0.98	-	2	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12808246	12808333	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12808334	12808497	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12808498	12808515	0.81	-	2	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12808498	12808515	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12808516	12808593	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12808594	12808716	0.99	-	2	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12808594	12808716	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12808717	12808931	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12808932	12808942	0.58	-	1	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12808932	12808942	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	intron	12808943	12809176	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	CDS	12809177	12810045	0.34	-	0	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	exon	12809177	12810045	.	-	.	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
Ledus.S2	AUGUSTUS	start_codon	12810043	12810045	.	-	0	transcript_id "Ledus.S2G170600.t1"; gene_id "Ledus.S2G170600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2407.t1 is derived from g9270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17976296	17977095	.	-	.	Ledus.S2G228900
Ledus.S2	AUGUSTUS	transcript	17976296	17977095	.	-	.	transcript_id "Ledus.S2G228900.t1"; gene_id "Ledus.S2G228900"
Ledus.S2	AUGUSTUS	stop_codon	17976293	17976295	.	-	0	transcript_id "Ledus.S2G228900.t1"; gene_id "Ledus.S2G228900"
Ledus.S2	AUGUSTUS	CDS	17976296	17976720	1	-	2	transcript_id "Ledus.S2G228900.t1"; gene_id "Ledus.S2G228900"
Ledus.S2	AUGUSTUS	exon	17976296	17976720	.	-	.	transcript_id "Ledus.S2G228900.t1"; gene_id "Ledus.S2G228900"
Ledus.S2	AUGUSTUS	intron	17976721	17976806	.	-	.	transcript_id "Ledus.S2G228900.t1"; gene_id "Ledus.S2G228900"
Ledus.S2	AUGUSTUS	CDS	17976807	17977095	0.95	-	0	transcript_id "Ledus.S2G228900.t1"; gene_id "Ledus.S2G228900"
Ledus.S2	AUGUSTUS	exon	17976807	17977095	.	-	.	transcript_id "Ledus.S2G228900.t1"; gene_id "Ledus.S2G228900"
Ledus.S2	AUGUSTUS	start_codon	17977093	17977095	.	-	0	transcript_id "Ledus.S2G228900.t1"; gene_id "Ledus.S2G228900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg769.t1 is derived from g7630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4896787	4898045	.	-	.	Ledus.S2G065100
Ledus.S2	AUGUSTUS	transcript	4896787	4898045	.	-	.	transcript_id "Ledus.S2G065100.t1"; gene_id "Ledus.S2G065100"
Ledus.S2	AUGUSTUS	stop_codon	4896784	4896786	.	-	0	transcript_id "Ledus.S2G065100.t1"; gene_id "Ledus.S2G065100"
Ledus.S2	AUGUSTUS	CDS	4896787	4897763	0.52	-	2	transcript_id "Ledus.S2G065100.t1"; gene_id "Ledus.S2G065100"
Ledus.S2	AUGUSTUS	exon	4896787	4897763	.	-	.	transcript_id "Ledus.S2G065100.t1"; gene_id "Ledus.S2G065100"
Ledus.S2	AUGUSTUS	intron	4897764	4897864	.	-	.	transcript_id "Ledus.S2G065100.t1"; gene_id "Ledus.S2G065100"
Ledus.S2	AUGUSTUS	CDS	4897865	4898045	0.81	-	0	transcript_id "Ledus.S2G065100.t1"; gene_id "Ledus.S2G065100"
Ledus.S2	AUGUSTUS	exon	4897865	4898045	.	-	.	transcript_id "Ledus.S2G065100.t1"; gene_id "Ledus.S2G065100"
Ledus.S2	AUGUSTUS	start_codon	4898043	4898045	.	-	0	transcript_id "Ledus.S2G065100.t1"; gene_id "Ledus.S2G065100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7934.t1 is derived from g12605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7932557	7934179	.	+	.	Ledus.S5G071200
Ledus.S5	AUGUSTUS	transcript	7932557	7934179	.	+	.	transcript_id "Ledus.S5G071200.t1"; gene_id "Ledus.S5G071200"
Ledus.S5	AUGUSTUS	start_codon	7932557	7932559	.	+	0	transcript_id "Ledus.S5G071200.t1"; gene_id "Ledus.S5G071200"
Ledus.S5	AUGUSTUS	CDS	7932557	7934179	0.97	+	0	transcript_id "Ledus.S5G071200.t1"; gene_id "Ledus.S5G071200"
Ledus.S5	AUGUSTUS	exon	7932557	7934179	.	+	.	transcript_id "Ledus.S5G071200.t1"; gene_id "Ledus.S5G071200"
Ledus.S5	AUGUSTUS	stop_codon	7934180	7934182	.	+	0	transcript_id "Ledus.S5G071200.t1"; gene_id "Ledus.S5G071200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2872.t1 is derived from g307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4301258	4301676	.	-	.	Ledus.S1G029300
Ledus.S1	AUGUSTUS	transcript	4301258	4301676	.	-	.	transcript_id "Ledus.S1G029300.t1"; gene_id "Ledus.S1G029300"
Ledus.S1	AUGUSTUS	stop_codon	4301255	4301257	.	-	0	transcript_id "Ledus.S1G029300.t1"; gene_id "Ledus.S1G029300"
Ledus.S1	AUGUSTUS	CDS	4301258	4301384	0.99	-	1	transcript_id "Ledus.S1G029300.t1"; gene_id "Ledus.S1G029300"
Ledus.S1	AUGUSTUS	exon	4301258	4301384	.	-	.	transcript_id "Ledus.S1G029300.t1"; gene_id "Ledus.S1G029300"
Ledus.S1	AUGUSTUS	intron	4301385	4301478	.	-	.	transcript_id "Ledus.S1G029300.t1"; gene_id "Ledus.S1G029300"
Ledus.S1	AUGUSTUS	CDS	4301479	4301535	1	-	1	transcript_id "Ledus.S1G029300.t1"; gene_id "Ledus.S1G029300"
Ledus.S1	AUGUSTUS	exon	4301479	4301535	.	-	.	transcript_id "Ledus.S1G029300.t1"; gene_id "Ledus.S1G029300"
Ledus.S1	AUGUSTUS	intron	4301536	4301617	.	-	.	transcript_id "Ledus.S1G029300.t1"; gene_id "Ledus.S1G029300"
Ledus.S1	AUGUSTUS	CDS	4301618	4301676	1	-	0	transcript_id "Ledus.S1G029300.t1"; gene_id "Ledus.S1G029300"
Ledus.S1	AUGUSTUS	exon	4301618	4301676	.	-	.	transcript_id "Ledus.S1G029300.t1"; gene_id "Ledus.S1G029300"
Ledus.S1	AUGUSTUS	start_codon	4301674	4301676	.	-	0	transcript_id "Ledus.S1G029300.t1"; gene_id "Ledus.S1G029300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12080.t1 is derived from g5699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9426767	9428628	.	-	.	Ledus.S4G123600
Ledus.S4	AUGUSTUS	transcript	9426767	9428628	.	-	.	transcript_id "Ledus.S4G123600.t1"; gene_id "Ledus.S4G123600"
Ledus.S4	AUGUSTUS	stop_codon	9426764	9426766	.	-	0	transcript_id "Ledus.S4G123600.t1"; gene_id "Ledus.S4G123600"
Ledus.S4	AUGUSTUS	CDS	9426767	9427684	0.97	-	0	transcript_id "Ledus.S4G123600.t1"; gene_id "Ledus.S4G123600"
Ledus.S4	AUGUSTUS	exon	9426767	9427684	.	-	.	transcript_id "Ledus.S4G123600.t1"; gene_id "Ledus.S4G123600"
Ledus.S4	AUGUSTUS	intron	9427685	9427818	.	-	.	transcript_id "Ledus.S4G123600.t1"; gene_id "Ledus.S4G123600"
Ledus.S4	AUGUSTUS	CDS	9427819	9428628	0.8	-	0	transcript_id "Ledus.S4G123600.t1"; gene_id "Ledus.S4G123600"
Ledus.S4	AUGUSTUS	exon	9427819	9428628	.	-	.	transcript_id "Ledus.S4G123600.t1"; gene_id "Ledus.S4G123600"
Ledus.S4	AUGUSTUS	start_codon	9428626	9428628	.	-	0	transcript_id "Ledus.S4G123600.t1"; gene_id "Ledus.S4G123600"
# This transcript jg11003.t2 is derived from g4621.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11004.t1 is derived from g4622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1072004	1072767	.	+	.	Ledus.S4G016000
Ledus.S4	AUGUSTUS	transcript	1072004	1072767	.	+	.	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	start_codon	1072004	1072006	.	+	0	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	CDS	1072004	1072060	0.71	+	0	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	exon	1072004	1072060	.	+	.	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	intron	1072061	1072151	.	+	.	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	CDS	1072152	1072233	1	+	0	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	exon	1072152	1072233	.	+	.	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	intron	1072234	1072333	.	+	.	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	CDS	1072334	1072416	1	+	2	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	exon	1072334	1072416	.	+	.	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	intron	1072417	1072602	.	+	.	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	CDS	1072603	1072767	1	+	0	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	exon	1072603	1072767	.	+	.	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
Ledus.S4	AUGUSTUS	stop_codon	1072768	1072770	.	+	0	transcript_id "Ledus.S4G016000.t1"; gene_id "Ledus.S4G016000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3489.t1 is derived from g924.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8694354	8699193	.	+	.	Ledus.S1G091000
Ledus.S1	AUGUSTUS	transcript	8694354	8699193	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	start_codon	8694354	8694356	.	+	0	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	CDS	8694354	8695160	0.73	+	0	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	exon	8694354	8695160	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	intron	8695161	8695308	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	CDS	8695309	8696337	1	+	0	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	exon	8695309	8696337	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	intron	8696338	8696442	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	CDS	8696443	8697579	0.9	+	0	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	exon	8696443	8697579	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	intron	8697580	8697711	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	CDS	8697712	8697753	1	+	0	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	exon	8697712	8697753	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	intron	8697754	8698165	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	CDS	8698166	8698242	1	+	0	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	exon	8698166	8698242	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	intron	8698243	8698331	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	CDS	8698332	8698419	1	+	1	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	exon	8698332	8698419	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	intron	8698420	8698503	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	CDS	8698504	8698587	1	+	0	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	exon	8698504	8698587	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	intron	8698588	8698683	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	CDS	8698684	8698785	1	+	0	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	exon	8698684	8698785	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	intron	8698786	8698879	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	CDS	8698880	8698978	1	+	0	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	exon	8698880	8698978	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	intron	8698979	8699073	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	CDS	8699074	8699193	1	+	0	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	exon	8699074	8699193	.	+	.	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
Ledus.S1	AUGUSTUS	stop_codon	8699194	8699196	.	+	0	transcript_id "Ledus.S1G091000.t1"; gene_id "Ledus.S1G091000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10357.t1 is derived from g11387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14376756	14379652	.	-	.	Ledus.S3G183400
Ledus.S3	AUGUSTUS	transcript	14376756	14379652	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	stop_codon	14376753	14376755	.	-	0	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	CDS	14376756	14377314	0.47	-	1	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	exon	14376756	14377314	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	intron	14377315	14377385	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	CDS	14377386	14377534	0.9	-	0	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	exon	14377386	14377534	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	intron	14377535	14377666	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	CDS	14377667	14377758	1	-	2	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	exon	14377667	14377758	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	intron	14377759	14377843	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	CDS	14377844	14377970	1	-	0	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	exon	14377844	14377970	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	intron	14377971	14378078	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	CDS	14378079	14378250	0.94	-	1	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	exon	14378079	14378250	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	intron	14378251	14378335	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	CDS	14378336	14378385	0.98	-	0	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	exon	14378336	14378385	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	intron	14378386	14378487	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	CDS	14378488	14378668	0.98	-	1	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	exon	14378488	14378668	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	intron	14378669	14378754	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	CDS	14378755	14378881	1	-	2	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	exon	14378755	14378881	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	intron	14378882	14378964	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	CDS	14378965	14379145	1	-	0	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	exon	14378965	14379145	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	intron	14379146	14379228	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	CDS	14379229	14379385	1	-	1	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	exon	14379229	14379385	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	intron	14379386	14379458	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	CDS	14379459	14379652	1	-	0	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	exon	14379459	14379652	.	-	.	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
Ledus.S3	AUGUSTUS	start_codon	14379650	14379652	.	-	0	transcript_id "Ledus.S3G183400.t1"; gene_id "Ledus.S3G183400"
# This transcript jg5537.t2 is derived from g2976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5538.t1 is derived from g2977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25034754	25040428	.	+	.	Ledus.S1G295900
Ledus.S1	AUGUSTUS	transcript	25034754	25040428	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	start_codon	25034754	25034756	.	+	0	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25034754	25035274	0.47	+	0	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25034754	25035274	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25035275	25035714	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25035715	25035991	1	+	1	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25035715	25035991	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25035992	25036139	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25036140	25036272	0.88	+	0	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25036140	25036272	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25036273	25036374	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25036375	25036477	0.75	+	2	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25036375	25036477	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25036478	25036609	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25036610	25036813	0.99	+	1	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25036610	25036813	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25036814	25036919	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25036920	25037190	1	+	1	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25036920	25037190	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25037191	25037286	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25037287	25037385	1	+	0	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25037287	25037385	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25037386	25037572	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25037573	25037661	1	+	0	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25037573	25037661	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25037662	25037746	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25037747	25037846	1	+	1	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25037747	25037846	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25037847	25037966	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25037967	25038137	1	+	0	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25037967	25038137	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25038138	25038237	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25038238	25038390	1	+	0	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25038238	25038390	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25038391	25038524	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25038525	25038685	1	+	0	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25038525	25038685	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25038686	25038795	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25038796	25038994	0.98	+	1	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25038796	25038994	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25038995	25039100	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25039101	25039837	0.94	+	0	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25039101	25039837	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25039838	25039942	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25039943	25040006	1	+	1	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25039943	25040006	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25040007	25040119	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25040120	25040206	0.92	+	0	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25040120	25040206	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	intron	25040207	25040353	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	CDS	25040354	25040428	1	+	0	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	exon	25040354	25040428	.	+	.	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
Ledus.S1	AUGUSTUS	stop_codon	25040429	25040431	.	+	0	transcript_id "Ledus.S1G295900.t1"; gene_id "Ledus.S1G295900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg232.t1 is derived from g7093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1015661	1019581	.	+	.	Ledus.S2G011400
Ledus.S2	AUGUSTUS	transcript	1015661	1019581	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	start_codon	1015661	1015663	.	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1015661	1015769	0.89	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1015661	1015769	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1015770	1015852	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1015853	1015939	1	+	2	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1015853	1015939	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1015940	1016036	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1016037	1016233	1	+	2	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1016037	1016233	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1016234	1016374	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1016375	1016479	0.93	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1016375	1016479	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1016480	1016596	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1016597	1016697	0.81	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1016597	1016697	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1016698	1016814	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1016815	1016893	0.83	+	1	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1016815	1016893	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1016894	1017177	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1017178	1017189	1	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1017178	1017189	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1017190	1017284	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1017285	1017350	1	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1017285	1017350	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1017351	1017579	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1017580	1017648	1	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1017580	1017648	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1017649	1017737	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1017738	1017794	1	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1017738	1017794	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1017795	1017879	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1017880	1017957	1	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1017880	1017957	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1017958	1018203	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1018204	1018301	1	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1018204	1018301	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1018302	1018456	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1018457	1018502	0.89	+	1	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1018457	1018502	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1018503	1018604	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1018605	1018744	1	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1018605	1018744	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1018745	1018827	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1018828	1018957	1	+	1	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1018828	1018957	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1018958	1019042	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1019043	1019108	1	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1019043	1019108	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1019109	1019194	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1019195	1019260	1	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1019195	1019260	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	intron	1019261	1019359	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	CDS	1019360	1019581	1	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	exon	1019360	1019581	.	+	.	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
Ledus.S2	AUGUSTUS	stop_codon	1019582	1019584	.	+	0	transcript_id "Ledus.S2G011400.t1"; gene_id "Ledus.S2G011400"
# This transcript jg9270.t2 is derived from g10300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9271.t1 is derived from g10301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5730595	5731392	.	-	.	Ledus.S3G074800
Ledus.S3	AUGUSTUS	transcript	5730595	5731392	.	-	.	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	stop_codon	5730592	5730594	.	-	0	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	CDS	5730595	5730640	0.99	-	1	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	exon	5730595	5730640	.	-	.	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	intron	5730641	5730778	.	-	.	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	CDS	5730779	5730800	1	-	2	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	exon	5730779	5730800	.	-	.	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	intron	5730801	5730919	.	-	.	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	CDS	5730920	5730990	1	-	1	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	exon	5730920	5730990	.	-	.	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	intron	5730991	5731279	.	-	.	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	CDS	5731280	5731392	1	-	0	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	exon	5731280	5731392	.	-	.	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
Ledus.S3	AUGUSTUS	start_codon	5731390	5731392	.	-	0	transcript_id "Ledus.S3G074800.t1"; gene_id "Ledus.S3G074800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8142.t1 is derived from g12813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9355070	9355708	.	+	.	Ledus.S5G092000
Ledus.S5	AUGUSTUS	transcript	9355070	9355708	.	+	.	transcript_id "Ledus.S5G092000.t1"; gene_id "Ledus.S5G092000"
Ledus.S5	AUGUSTUS	start_codon	9355070	9355072	.	+	0	transcript_id "Ledus.S5G092000.t1"; gene_id "Ledus.S5G092000"
Ledus.S5	AUGUSTUS	CDS	9355070	9355072	1	+	0	transcript_id "Ledus.S5G092000.t1"; gene_id "Ledus.S5G092000"
Ledus.S5	AUGUSTUS	exon	9355070	9355072	.	+	.	transcript_id "Ledus.S5G092000.t1"; gene_id "Ledus.S5G092000"
Ledus.S5	AUGUSTUS	intron	9355073	9355150	.	+	.	transcript_id "Ledus.S5G092000.t1"; gene_id "Ledus.S5G092000"
Ledus.S5	AUGUSTUS	CDS	9355151	9355708	1	+	0	transcript_id "Ledus.S5G092000.t1"; gene_id "Ledus.S5G092000"
Ledus.S5	AUGUSTUS	exon	9355151	9355708	.	+	.	transcript_id "Ledus.S5G092000.t1"; gene_id "Ledus.S5G092000"
Ledus.S5	AUGUSTUS	stop_codon	9355709	9355711	.	+	0	transcript_id "Ledus.S5G092000.t1"; gene_id "Ledus.S5G092000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9289.t1 is derived from g10319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5799252	5801884	.	+	.	Ledus.S3G076600
Ledus.S3	AUGUSTUS	transcript	5799252	5801884	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	start_codon	5799252	5799254	.	+	0	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	CDS	5799252	5799338	0.6	+	0	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	exon	5799252	5799338	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	intron	5799339	5799581	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	CDS	5799582	5799656	0.64	+	0	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	exon	5799582	5799656	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	intron	5799657	5799752	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	CDS	5799753	5799835	0.76	+	0	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	exon	5799753	5799835	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	intron	5799836	5799962	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	CDS	5799963	5800122	1	+	1	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	exon	5799963	5800122	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	intron	5800123	5800249	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	CDS	5800250	5800379	1	+	0	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	exon	5800250	5800379	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	intron	5800380	5800589	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	CDS	5800590	5800598	1	+	2	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	exon	5800590	5800598	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	intron	5800599	5800896	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	CDS	5800897	5801052	1	+	2	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	exon	5800897	5801052	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	intron	5801053	5801146	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	CDS	5801147	5801325	1	+	2	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	exon	5801147	5801325	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	intron	5801326	5801463	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	CDS	5801464	5801544	1	+	0	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	exon	5801464	5801544	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	intron	5801545	5801650	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	CDS	5801651	5801722	1	+	0	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	exon	5801651	5801722	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	intron	5801723	5801803	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	CDS	5801804	5801884	1	+	0	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	exon	5801804	5801884	.	+	.	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
Ledus.S3	AUGUSTUS	stop_codon	5801885	5801887	.	+	0	transcript_id "Ledus.S3G076600.t1"; gene_id "Ledus.S3G076600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3906.t1 is derived from g1342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13519547	13522108	.	+	.	Ledus.S1G132700
Ledus.S1	AUGUSTUS	transcript	13520171	13522108	.	+	.	transcript_id "Ledus.S1G132700.t1"; gene_id "Ledus.S1G132700"
Ledus.S1	AUGUSTUS	start_codon	13520171	13520173	.	+	0	transcript_id "Ledus.S1G132700.t1"; gene_id "Ledus.S1G132700"
Ledus.S1	AUGUSTUS	CDS	13520171	13522108	1	+	0	transcript_id "Ledus.S1G132700.t1"; gene_id "Ledus.S1G132700"
Ledus.S1	AUGUSTUS	exon	13520171	13522108	.	+	.	transcript_id "Ledus.S1G132700.t1"; gene_id "Ledus.S1G132700"
Ledus.S1	AUGUSTUS	stop_codon	13522109	13522111	.	+	0	transcript_id "Ledus.S1G132700.t1"; gene_id "Ledus.S1G132700"
Ledus.S1	AUGUSTUS	transcript	13519547	13522108	.	+	.	transcript_id "Ledus.S1G132700.t2"; gene_id "Ledus.S1G132700"
Ledus.S1	AUGUSTUS	start_codon	13519547	13519549	.	+	0	transcript_id "Ledus.S1G132700.t2"; gene_id "Ledus.S1G132700"
Ledus.S1	AUGUSTUS	CDS	13519547	13522108	0.99	+	0	transcript_id "Ledus.S1G132700.t2"; gene_id "Ledus.S1G132700"
Ledus.S1	AUGUSTUS	exon	13519547	13522108	.	+	.	transcript_id "Ledus.S1G132700.t2"; gene_id "Ledus.S1G132700"
Ledus.S1	AUGUSTUS	stop_codon	13522109	13522111	.	+	0	transcript_id "Ledus.S1G132700.t2"; gene_id "Ledus.S1G132700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2606.t1 is derived from g39.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	372838	373350	.	-	.	Ledus.S1G002700
Ledus.S1	AUGUSTUS	transcript	372838	373350	.	-	.	transcript_id "Ledus.S1G002700.t1"; gene_id "Ledus.S1G002700"
Ledus.S1	AUGUSTUS	stop_codon	372835	372837	.	-	0	transcript_id "Ledus.S1G002700.t1"; gene_id "Ledus.S1G002700"
Ledus.S1	AUGUSTUS	CDS	372838	372877	1	-	1	transcript_id "Ledus.S1G002700.t1"; gene_id "Ledus.S1G002700"
Ledus.S1	AUGUSTUS	exon	372838	372877	.	-	.	transcript_id "Ledus.S1G002700.t1"; gene_id "Ledus.S1G002700"
Ledus.S1	AUGUSTUS	intron	372878	372960	.	-	.	transcript_id "Ledus.S1G002700.t1"; gene_id "Ledus.S1G002700"
Ledus.S1	AUGUSTUS	CDS	372961	373160	1	-	0	transcript_id "Ledus.S1G002700.t1"; gene_id "Ledus.S1G002700"
Ledus.S1	AUGUSTUS	exon	372961	373160	.	-	.	transcript_id "Ledus.S1G002700.t1"; gene_id "Ledus.S1G002700"
Ledus.S1	AUGUSTUS	intron	373161	373254	.	-	.	transcript_id "Ledus.S1G002700.t1"; gene_id "Ledus.S1G002700"
Ledus.S1	AUGUSTUS	CDS	373255	373350	0.99	-	0	transcript_id "Ledus.S1G002700.t1"; gene_id "Ledus.S1G002700"
Ledus.S1	AUGUSTUS	exon	373255	373350	.	-	.	transcript_id "Ledus.S1G002700.t1"; gene_id "Ledus.S1G002700"
Ledus.S1	AUGUSTUS	start_codon	373348	373350	.	-	0	transcript_id "Ledus.S1G002700.t1"; gene_id "Ledus.S1G002700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11768.t1 is derived from g5387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6668380	6672527	.	-	.	Ledus.S4G092400
Ledus.S4	AUGUSTUS	transcript	6668380	6672527	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	stop_codon	6668377	6668379	.	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6668380	6668497	0.57	-	1	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6668380	6668497	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6668498	6668594	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6668595	6668680	0.95	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6668595	6668680	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6668681	6668769	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6668770	6668887	1	-	1	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6668770	6668887	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6668888	6668971	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6668972	6669108	1	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6668972	6669108	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6669109	6669213	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6669214	6669376	0.7	-	1	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6669214	6669376	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6669377	6669526	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6669527	6669696	0.79	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6669527	6669696	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6669697	6669808	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6669809	6669952	0.99	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6669809	6669952	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6669953	6670038	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6670039	6670173	1	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6670039	6670173	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6670174	6670291	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6670292	6670405	1	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6670292	6670405	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6670406	6670757	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6670758	6670835	0.96	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6670758	6670835	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6670836	6670932	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6670933	6670998	1	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6670933	6670998	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6670999	6671254	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6671255	6671311	0.97	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6671255	6671311	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6671312	6671444	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6671445	6671546	0.97	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6671445	6671546	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6671547	6671681	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6671682	6671845	0.98	-	2	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6671682	6671845	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6671846	6671955	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6671956	6672158	0.99	-	1	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6671956	6672158	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6672159	6672276	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6672277	6672527	0.83	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6672277	6672527	.	-	.	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	start_codon	6672525	6672527	.	-	0	transcript_id "Ledus.S4G092400.t1"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	transcript	6668380	6672527	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	stop_codon	6668377	6668379	.	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6668380	6668497	0.53	-	1	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6668380	6668497	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6668498	6668594	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6668595	6668680	0.96	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6668595	6668680	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6668681	6668769	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6668770	6668887	1	-	1	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6668770	6668887	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6668888	6668971	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6668972	6669108	1	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6668972	6669108	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6669109	6669213	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6669214	6669376	0.58	-	1	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6669214	6669376	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6669377	6669526	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6669527	6669696	0.66	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6669527	6669696	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6669697	6669808	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6669809	6669952	0.99	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6669809	6669952	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6669953	6670038	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6670039	6670173	1	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6670039	6670173	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6670174	6670291	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6670292	6670405	1	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6670292	6670405	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6670406	6670742	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6670743	6670835	1	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6670743	6670835	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6670836	6670932	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6670933	6670998	1	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6670933	6670998	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6670999	6671254	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6671255	6671311	1	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6671255	6671311	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6671312	6671444	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6671445	6671546	0.66	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6671445	6671546	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6671547	6671681	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6671682	6671845	0.68	-	2	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6671682	6671845	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6671846	6671955	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6671956	6672158	0.48	-	1	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6671956	6672158	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	intron	6672159	6672276	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	CDS	6672277	6672527	0.74	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	exon	6672277	6672527	.	-	.	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
Ledus.S4	AUGUSTUS	start_codon	6672525	6672527	.	-	0	transcript_id "Ledus.S4G092400.t2"; gene_id "Ledus.S4G092400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6581.t1 is derived from g4024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32490706	32491278	.	-	.	Ledus.S1G400200
Ledus.S1	AUGUSTUS	transcript	32490706	32491278	.	-	.	transcript_id "Ledus.S1G400200.t1"; gene_id "Ledus.S1G400200"
Ledus.S1	AUGUSTUS	stop_codon	32490703	32490705	.	-	0	transcript_id "Ledus.S1G400200.t1"; gene_id "Ledus.S1G400200"
Ledus.S1	AUGUSTUS	CDS	32490706	32490763	1	-	1	transcript_id "Ledus.S1G400200.t1"; gene_id "Ledus.S1G400200"
Ledus.S1	AUGUSTUS	exon	32490706	32490763	.	-	.	transcript_id "Ledus.S1G400200.t1"; gene_id "Ledus.S1G400200"
Ledus.S1	AUGUSTUS	intron	32490764	32491126	.	-	.	transcript_id "Ledus.S1G400200.t1"; gene_id "Ledus.S1G400200"
Ledus.S1	AUGUSTUS	CDS	32491127	32491278	0.78	-	0	transcript_id "Ledus.S1G400200.t1"; gene_id "Ledus.S1G400200"
Ledus.S1	AUGUSTUS	exon	32491127	32491278	.	-	.	transcript_id "Ledus.S1G400200.t1"; gene_id "Ledus.S1G400200"
Ledus.S1	AUGUSTUS	start_codon	32491276	32491278	.	-	0	transcript_id "Ledus.S1G400200.t1"; gene_id "Ledus.S1G400200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8452.t1 is derived from g13124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11775300	11778249	.	+	.	Ledus.S5G123000
Ledus.S5	AUGUSTUS	transcript	11775300	11778249	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	start_codon	11775300	11775302	.	+	0	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11775300	11775456	0.98	+	0	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11775300	11775456	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11775457	11775551	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11775552	11775592	1	+	2	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11775552	11775592	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11775593	11775667	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11775668	11775728	1	+	0	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11775668	11775728	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11775729	11775828	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11775829	11775931	1	+	2	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11775829	11775931	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11775932	11776022	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11776023	11776125	1	+	1	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11776023	11776125	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11776126	11776227	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11776228	11776281	1	+	0	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11776228	11776281	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11776282	11776374	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11776375	11776437	1	+	0	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11776375	11776437	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11776438	11776527	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11776528	11776577	1	+	0	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11776528	11776577	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11776578	11776659	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11776660	11776735	1	+	1	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11776660	11776735	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11776736	11776805	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11776806	11777033	1	+	0	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11776806	11777033	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11777034	11777129	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11777130	11777217	1	+	0	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11777130	11777217	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11777218	11777304	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11777305	11777390	1	+	2	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11777305	11777390	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11777391	11777476	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11777477	11777584	1	+	0	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11777477	11777584	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11777585	11777659	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11777660	11777704	1	+	0	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11777660	11777704	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11777705	11777792	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11777793	11777881	1	+	0	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11777793	11777881	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11777882	11777990	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11777991	11778031	1	+	1	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11777991	11778031	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	intron	11778032	11778127	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	CDS	11778128	11778249	0.99	+	2	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	exon	11778128	11778249	.	+	.	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
Ledus.S5	AUGUSTUS	stop_codon	11778250	11778252	.	+	0	transcript_id "Ledus.S5G123000.t1"; gene_id "Ledus.S5G123000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8179.t1 is derived from g12850.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9692616	9694418	.	-	.	Ledus.S5G095700
Ledus.S5	AUGUSTUS	transcript	9692616	9694418	.	-	.	transcript_id "Ledus.S5G095700.t1"; gene_id "Ledus.S5G095700"
Ledus.S5	AUGUSTUS	stop_codon	9692613	9692615	.	-	0	transcript_id "Ledus.S5G095700.t1"; gene_id "Ledus.S5G095700"
Ledus.S5	AUGUSTUS	CDS	9692616	9694418	0.99	-	0	transcript_id "Ledus.S5G095700.t1"; gene_id "Ledus.S5G095700"
Ledus.S5	AUGUSTUS	exon	9692616	9694418	.	-	.	transcript_id "Ledus.S5G095700.t1"; gene_id "Ledus.S5G095700"
Ledus.S5	AUGUSTUS	start_codon	9694416	9694418	.	-	0	transcript_id "Ledus.S5G095700.t1"; gene_id "Ledus.S5G095700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12091.t1 is derived from g5710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9469289	9472767	.	+	.	Ledus.S4G124700
Ledus.S4	AUGUSTUS	transcript	9469289	9472767	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	start_codon	9469289	9469291	.	+	0	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9469289	9469405	0.99	+	0	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9469289	9469405	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9469406	9469519	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9469520	9469642	0.98	+	0	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9469520	9469642	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9469643	9469737	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9469738	9469824	0.93	+	0	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9469738	9469824	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9469825	9469930	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9469931	9470035	1	+	0	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9469931	9470035	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9470036	9470122	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9470123	9470284	1	+	0	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9470123	9470284	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9470285	9470407	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9470408	9470443	1	+	0	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9470408	9470443	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9470444	9470534	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9470535	9470603	1	+	0	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9470535	9470603	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9470604	9470737	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9470738	9471003	1	+	0	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9470738	9471003	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9471004	9471101	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9471102	9471298	1	+	1	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9471102	9471298	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9471299	9471373	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9471374	9471412	0.74	+	2	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9471374	9471412	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9471413	9471599	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9471600	9471642	0.92	+	2	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9471600	9471642	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9471643	9471996	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9471997	9472204	0.49	+	1	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9471997	9472204	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9472205	9472315	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9472316	9472356	0.26	+	0	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9472316	9472356	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9472357	9472561	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9472562	9472651	0.41	+	1	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9472562	9472651	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	intron	9472652	9472736	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	CDS	9472737	9472767	0.54	+	1	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	exon	9472737	9472767	.	+	.	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
Ledus.S4	AUGUSTUS	stop_codon	9472768	9472770	.	+	0	transcript_id "Ledus.S4G124700.t1"; gene_id "Ledus.S4G124700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg643.t1 is derived from g7504.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3850941	3852796	.	-	.	Ledus.S2G052500
Ledus.S2	AUGUSTUS	transcript	3850941	3852796	.	-	.	transcript_id "Ledus.S2G052500.t1"; gene_id "Ledus.S2G052500"
Ledus.S2	AUGUSTUS	stop_codon	3850938	3850940	.	-	0	transcript_id "Ledus.S2G052500.t1"; gene_id "Ledus.S2G052500"
Ledus.S2	AUGUSTUS	CDS	3850941	3851011	1	-	2	transcript_id "Ledus.S2G052500.t1"; gene_id "Ledus.S2G052500"
Ledus.S2	AUGUSTUS	exon	3850941	3851011	.	-	.	transcript_id "Ledus.S2G052500.t1"; gene_id "Ledus.S2G052500"
Ledus.S2	AUGUSTUS	intron	3851012	3851108	.	-	.	transcript_id "Ledus.S2G052500.t1"; gene_id "Ledus.S2G052500"
Ledus.S2	AUGUSTUS	CDS	3851109	3851166	1	-	0	transcript_id "Ledus.S2G052500.t1"; gene_id "Ledus.S2G052500"
Ledus.S2	AUGUSTUS	exon	3851109	3851166	.	-	.	transcript_id "Ledus.S2G052500.t1"; gene_id "Ledus.S2G052500"
Ledus.S2	AUGUSTUS	intron	3851167	3851284	.	-	.	transcript_id "Ledus.S2G052500.t1"; gene_id "Ledus.S2G052500"
Ledus.S2	AUGUSTUS	CDS	3851285	3852796	0.99	-	0	transcript_id "Ledus.S2G052500.t1"; gene_id "Ledus.S2G052500"
Ledus.S2	AUGUSTUS	exon	3851285	3852796	.	-	.	transcript_id "Ledus.S2G052500.t1"; gene_id "Ledus.S2G052500"
Ledus.S2	AUGUSTUS	start_codon	3852794	3852796	.	-	0	transcript_id "Ledus.S2G052500.t1"; gene_id "Ledus.S2G052500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3434.t1 is derived from g869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8354396	8357126	.	-	.	Ledus.S1G085500
Ledus.S1	AUGUSTUS	transcript	8354396	8357126	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	stop_codon	8354393	8354395	.	-	0	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	CDS	8354396	8354506	1	-	0	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	exon	8354396	8354506	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	intron	8354507	8354606	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	CDS	8354607	8354683	1	-	2	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	exon	8354607	8354683	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	intron	8354684	8354786	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	CDS	8354787	8354908	0.83	-	1	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	exon	8354787	8354908	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	intron	8354909	8354987	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	CDS	8354988	8355169	1	-	0	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	exon	8354988	8355169	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	intron	8355170	8355303	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	CDS	8355304	8355414	1	-	0	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	exon	8355304	8355414	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	intron	8355415	8355523	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	CDS	8355524	8355571	0.97	-	0	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	exon	8355524	8355571	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	intron	8355572	8355705	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	CDS	8355706	8355845	1	-	2	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	exon	8355706	8355845	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	intron	8355846	8355955	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	CDS	8355956	8356093	0.97	-	2	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	exon	8355956	8356093	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	intron	8356094	8356189	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	CDS	8356190	8356296	0.75	-	1	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	exon	8356190	8356296	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	intron	8356297	8356457	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	CDS	8356458	8356535	0.75	-	1	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	exon	8356458	8356535	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	intron	8356536	8356738	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	CDS	8356739	8356851	0.71	-	0	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	exon	8356739	8356851	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	intron	8356852	8356958	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	CDS	8356959	8357126	0.97	-	0	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	exon	8356959	8357126	.	-	.	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
Ledus.S1	AUGUSTUS	start_codon	8357124	8357126	.	-	0	transcript_id "Ledus.S1G085500.t1"; gene_id "Ledus.S1G085500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1961.t1 is derived from g8824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13836140	13836457	.	-	.	Ledus.S2G184300
Ledus.S2	AUGUSTUS	transcript	13836140	13836457	.	-	.	transcript_id "Ledus.S2G184300.t1"; gene_id "Ledus.S2G184300"
Ledus.S2	AUGUSTUS	stop_codon	13836137	13836139	.	-	0	transcript_id "Ledus.S2G184300.t1"; gene_id "Ledus.S2G184300"
Ledus.S2	AUGUSTUS	CDS	13836140	13836457	0.75	-	0	transcript_id "Ledus.S2G184300.t1"; gene_id "Ledus.S2G184300"
Ledus.S2	AUGUSTUS	exon	13836140	13836457	.	-	.	transcript_id "Ledus.S2G184300.t1"; gene_id "Ledus.S2G184300"
Ledus.S2	AUGUSTUS	start_codon	13836455	13836457	.	-	0	transcript_id "Ledus.S2G184300.t1"; gene_id "Ledus.S2G184300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11500.t1 is derived from g5118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4942582	4944673	.	-	.	Ledus.S4G065600
Ledus.S4	AUGUSTUS	transcript	4942582	4944673	.	-	.	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	stop_codon	4942579	4942581	.	-	0	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	CDS	4942582	4943070	0.86	-	0	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	exon	4942582	4943070	.	-	.	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	intron	4943071	4943136	.	-	.	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	CDS	4943137	4944067	0.9	-	1	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	exon	4943137	4944067	.	-	.	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	intron	4944068	4944169	.	-	.	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	CDS	4944170	4944216	1	-	0	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	exon	4944170	4944216	.	-	.	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	intron	4944217	4944304	.	-	.	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	CDS	4944305	4944673	0.85	-	0	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	exon	4944305	4944673	.	-	.	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
Ledus.S4	AUGUSTUS	start_codon	4944671	4944673	.	-	0	transcript_id "Ledus.S4G065600.t1"; gene_id "Ledus.S4G065600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9568.t1 is derived from g10598.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7853861	7858344	.	-	.	Ledus.S3G104500
Ledus.S3	AUGUSTUS	transcript	7853861	7858344	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	stop_codon	7853858	7853860	.	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7853861	7854352	0.99	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7853861	7854352	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7854353	7854444	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7854445	7854547	1	-	1	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7854445	7854547	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7854548	7854623	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7854624	7854730	1	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7854624	7854730	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7854731	7854818	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7854819	7854947	1	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7854819	7854947	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7854948	7855035	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7855036	7855122	1	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7855036	7855122	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7855123	7855206	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7855207	7855297	1	-	1	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7855207	7855297	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7855298	7855392	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7855393	7855498	1	-	2	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7855393	7855498	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7855499	7855584	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7855585	7855724	0.98	-	1	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7855585	7855724	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7855725	7855829	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7855830	7855912	0.99	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7855830	7855912	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7855913	7856052	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7856053	7856165	1	-	2	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7856053	7856165	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7856166	7856289	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7856290	7856338	1	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7856290	7856338	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7856339	7856440	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7856441	7856488	0.99	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7856441	7856488	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7856489	7856612	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7856613	7856672	1	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7856613	7856672	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7856673	7856782	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7856783	7856848	1	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7856783	7856848	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7856849	7856970	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7856971	7857042	1	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7856971	7857042	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7857043	7857259	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7857260	7857346	1	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7857260	7857346	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7857347	7857523	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7857524	7857644	1	-	1	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7857524	7857644	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7857645	7857753	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7857754	7857803	1	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7857754	7857803	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7857804	7857942	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7857943	7858038	1	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7857943	7858038	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	intron	7858039	7858116	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	CDS	7858117	7858344	0.88	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	exon	7858117	7858344	.	-	.	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
Ledus.S3	AUGUSTUS	start_codon	7858342	7858344	.	-	0	transcript_id "Ledus.S3G104500.t1"; gene_id "Ledus.S3G104500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9883.t1 is derived from g10913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10914878	10917307	.	+	.	Ledus.S3G136000
Ledus.S3	AUGUSTUS	transcript	10914878	10917307	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	start_codon	10914878	10914880	.	+	0	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10914878	10915020	1	+	0	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10914878	10915020	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915021	10915115	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915116	10915274	1	+	1	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915116	10915274	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915275	10915361	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915362	10915428	1	+	1	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915362	10915428	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915429	10915513	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915514	10915594	0.99	+	0	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915514	10915594	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915595	10915727	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915728	10915846	0.99	+	0	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915728	10915846	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915847	10915938	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915939	10915991	1	+	1	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915939	10915991	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915992	10916214	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10916215	10917117	0.99	+	2	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10916215	10917117	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10917118	10917215	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10917216	10917307	0.9	+	2	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10917216	10917307	.	+	.	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	stop_codon	10917308	10917310	.	+	0	transcript_id "Ledus.S3G136000.t1"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	transcript	10914878	10917307	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	start_codon	10914878	10914880	.	+	0	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10914878	10915020	1	+	0	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10914878	10915020	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915021	10915115	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915116	10915274	1	+	1	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915116	10915274	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915275	10915361	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915362	10915428	1	+	1	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915362	10915428	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915429	10915513	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915514	10915629	0.97	+	0	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915514	10915629	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915630	10915727	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915728	10915745	0.94	+	1	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915728	10915745	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915746	10915825	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915826	10915846	0.62	+	1	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915826	10915846	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915847	10915938	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915939	10915991	1	+	1	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915939	10915991	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915992	10916214	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10916215	10917117	1	+	2	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10916215	10917117	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10917118	10917215	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10917216	10917307	0.93	+	2	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10917216	10917307	.	+	.	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	stop_codon	10917308	10917310	.	+	0	transcript_id "Ledus.S3G136000.t2"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	transcript	10914878	10917307	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	start_codon	10914878	10914880	.	+	0	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10914878	10915033	0.88	+	0	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10914878	10915033	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915034	10915115	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915116	10915125	0.45	+	0	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915116	10915125	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915126	10915201	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915202	10915274	0.33	+	2	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915202	10915274	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915275	10915361	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915362	10915428	1	+	1	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915362	10915428	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915429	10915513	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915514	10915594	0.36	+	0	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915514	10915594	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915595	10915727	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915728	10915846	0.36	+	0	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915728	10915846	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915847	10915938	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10915939	10915991	1	+	1	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10915939	10915991	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10915992	10916214	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10916215	10917117	1	+	2	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10916215	10917117	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	intron	10917118	10917215	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	CDS	10917216	10917307	0.93	+	2	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	exon	10917216	10917307	.	+	.	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
Ledus.S3	AUGUSTUS	stop_codon	10917308	10917310	.	+	0	transcript_id "Ledus.S3G136000.t3"; gene_id "Ledus.S3G136000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7433.t1 is derived from g12104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2596908	2597518	.	-	.	Ledus.S5G021100
Ledus.S5	AUGUSTUS	transcript	2596908	2597518	.	-	.	transcript_id "Ledus.S5G021100.t1"; gene_id "Ledus.S5G021100"
Ledus.S5	AUGUSTUS	stop_codon	2596905	2596907	.	-	0	transcript_id "Ledus.S5G021100.t1"; gene_id "Ledus.S5G021100"
Ledus.S5	AUGUSTUS	CDS	2596908	2597120	0.42	-	0	transcript_id "Ledus.S5G021100.t1"; gene_id "Ledus.S5G021100"
Ledus.S5	AUGUSTUS	exon	2596908	2597120	.	-	.	transcript_id "Ledus.S5G021100.t1"; gene_id "Ledus.S5G021100"
Ledus.S5	AUGUSTUS	intron	2597121	2597254	.	-	.	transcript_id "Ledus.S5G021100.t1"; gene_id "Ledus.S5G021100"
Ledus.S5	AUGUSTUS	CDS	2597255	2597518	0.34	-	0	transcript_id "Ledus.S5G021100.t1"; gene_id "Ledus.S5G021100"
Ledus.S5	AUGUSTUS	exon	2597255	2597518	.	-	.	transcript_id "Ledus.S5G021100.t1"; gene_id "Ledus.S5G021100"
Ledus.S5	AUGUSTUS	start_codon	2597516	2597518	.	-	0	transcript_id "Ledus.S5G021100.t1"; gene_id "Ledus.S5G021100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5865.t1 is derived from g3307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27440483	27441672	.	+	.	Ledus.S1G328600
Ledus.S1	AUGUSTUS	transcript	27440483	27441672	.	+	.	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	start_codon	27440483	27440485	.	+	0	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	CDS	27440483	27440673	0.31	+	0	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	exon	27440483	27440673	.	+	.	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	intron	27440674	27440920	.	+	.	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	CDS	27440921	27440932	0.49	+	1	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	exon	27440921	27440932	.	+	.	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	intron	27440933	27441170	.	+	.	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	CDS	27441171	27441216	0.47	+	1	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	exon	27441171	27441216	.	+	.	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	intron	27441217	27441319	.	+	.	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	CDS	27441320	27441424	1	+	0	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	exon	27441320	27441424	.	+	.	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	intron	27441425	27441624	.	+	.	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	CDS	27441625	27441672	1	+	0	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	exon	27441625	27441672	.	+	.	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
Ledus.S1	AUGUSTUS	stop_codon	27441673	27441675	.	+	0	transcript_id "Ledus.S1G328600.t1"; gene_id "Ledus.S1G328600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2591.t1 is derived from g24.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	175917	177861	.	-	.	Ledus.S1G001200
Ledus.S1	AUGUSTUS	transcript	175917	177861	.	-	.	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	stop_codon	175914	175916	.	-	0	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	CDS	175917	176046	1	-	1	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	exon	175917	176046	.	-	.	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	intron	176047	176132	.	-	.	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	CDS	176133	176187	1	-	2	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	exon	176133	176187	.	-	.	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	intron	176188	177528	.	-	.	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	CDS	177529	177625	1	-	0	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	exon	177529	177625	.	-	.	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	intron	177626	177717	.	-	.	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	CDS	177718	177861	1	-	0	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	exon	177718	177861	.	-	.	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
Ledus.S1	AUGUSTUS	start_codon	177859	177861	.	-	0	transcript_id "Ledus.S1G001200.t1"; gene_id "Ledus.S1G001200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6781.t1 is derived from g4225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34106626	34106913	.	-	.	Ledus.S1G420200
Ledus.S1	AUGUSTUS	transcript	34106626	34106913	.	-	.	transcript_id "Ledus.S1G420200.t1"; gene_id "Ledus.S1G420200"
Ledus.S1	AUGUSTUS	stop_codon	34106623	34106625	.	-	0	transcript_id "Ledus.S1G420200.t1"; gene_id "Ledus.S1G420200"
Ledus.S1	AUGUSTUS	CDS	34106626	34106913	0.83	-	0	transcript_id "Ledus.S1G420200.t1"; gene_id "Ledus.S1G420200"
Ledus.S1	AUGUSTUS	exon	34106626	34106913	.	-	.	transcript_id "Ledus.S1G420200.t1"; gene_id "Ledus.S1G420200"
Ledus.S1	AUGUSTUS	start_codon	34106911	34106913	.	-	0	transcript_id "Ledus.S1G420200.t1"; gene_id "Ledus.S1G420200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg36.t1 is derived from g9548.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C12	AUGUSTUS	gene	180962	181316	.	+	.	Ledus.C12G000700
Ledus.C12	AUGUSTUS	transcript	180962	181316	.	+	.	transcript_id "Ledus.C12G000700.t1"; gene_id "Ledus.C12G000700"
Ledus.C12	AUGUSTUS	start_codon	180962	180964	.	+	0	transcript_id "Ledus.C12G000700.t1"; gene_id "Ledus.C12G000700"
Ledus.C12	AUGUSTUS	CDS	180962	181161	0.57	+	0	transcript_id "Ledus.C12G000700.t1"; gene_id "Ledus.C12G000700"
Ledus.C12	AUGUSTUS	exon	180962	181161	.	+	.	transcript_id "Ledus.C12G000700.t1"; gene_id "Ledus.C12G000700"
Ledus.C12	AUGUSTUS	intron	181162	181273	.	+	.	transcript_id "Ledus.C12G000700.t1"; gene_id "Ledus.C12G000700"
Ledus.C12	AUGUSTUS	CDS	181274	181316	0.65	+	1	transcript_id "Ledus.C12G000700.t1"; gene_id "Ledus.C12G000700"
Ledus.C12	AUGUSTUS	exon	181274	181316	.	+	.	transcript_id "Ledus.C12G000700.t1"; gene_id "Ledus.C12G000700"
Ledus.C12	AUGUSTUS	stop_codon	181317	181319	.	+	0	transcript_id "Ledus.C12G000700.t1"; gene_id "Ledus.C12G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12778.t1 is derived from g6400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14443426	14446158	.	-	.	Ledus.S4G193400
Ledus.S4	AUGUSTUS	transcript	14443426	14446158	.	-	.	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	stop_codon	14443423	14443425	.	-	0	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	CDS	14443426	14443857	0.99	-	0	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	exon	14443426	14443857	.	-	.	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	intron	14443858	14444052	.	-	.	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	CDS	14444053	14444202	1	-	0	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	exon	14444053	14444202	.	-	.	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	intron	14444203	14444463	.	-	.	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	CDS	14444464	14445534	1	-	0	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	exon	14444464	14445534	.	-	.	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	intron	14445535	14445732	.	-	.	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	CDS	14445733	14446158	0.56	-	0	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	exon	14445733	14446158	.	-	.	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
Ledus.S4	AUGUSTUS	start_codon	14446156	14446158	.	-	0	transcript_id "Ledus.S4G193400.t1"; gene_id "Ledus.S4G193400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7618.t1 is derived from g12289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4400982	4402208	.	-	.	Ledus.S5G039600
Ledus.S5	AUGUSTUS	transcript	4400982	4402208	.	-	.	transcript_id "Ledus.S5G039600.t1"; gene_id "Ledus.S5G039600"
Ledus.S5	AUGUSTUS	stop_codon	4400979	4400981	.	-	0	transcript_id "Ledus.S5G039600.t1"; gene_id "Ledus.S5G039600"
Ledus.S5	AUGUSTUS	CDS	4400982	4402208	1	-	0	transcript_id "Ledus.S5G039600.t1"; gene_id "Ledus.S5G039600"
Ledus.S5	AUGUSTUS	exon	4400982	4402208	.	-	.	transcript_id "Ledus.S5G039600.t1"; gene_id "Ledus.S5G039600"
Ledus.S5	AUGUSTUS	start_codon	4402206	4402208	.	-	0	transcript_id "Ledus.S5G039600.t1"; gene_id "Ledus.S5G039600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1198.t1 is derived from g8059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8520034	8521814	.	-	.	Ledus.S2G108000
Ledus.S2	AUGUSTUS	transcript	8520034	8521814	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	stop_codon	8520031	8520033	.	-	0	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	CDS	8520034	8520144	0.53	-	0	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	exon	8520034	8520144	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	intron	8520145	8520315	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	CDS	8520316	8520390	1	-	0	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	exon	8520316	8520390	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	intron	8520391	8520546	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	CDS	8520547	8520620	1	-	2	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	exon	8520547	8520620	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	intron	8520621	8520785	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	CDS	8520786	8520897	1	-	0	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	exon	8520786	8520897	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	intron	8520898	8521009	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	CDS	8521010	8521082	0.92	-	1	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	exon	8521010	8521082	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	intron	8521083	8521199	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	CDS	8521200	8521255	1	-	0	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	exon	8521200	8521255	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	intron	8521256	8521405	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	CDS	8521406	8521482	1	-	2	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	exon	8521406	8521482	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	intron	8521483	8521572	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	CDS	8521573	8521639	1	-	0	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	exon	8521573	8521639	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	intron	8521640	8521766	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	CDS	8521767	8521814	0.99	-	0	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	exon	8521767	8521814	.	-	.	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
Ledus.S2	AUGUSTUS	start_codon	8521812	8521814	.	-	0	transcript_id "Ledus.S2G108000.t1"; gene_id "Ledus.S2G108000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5026.t1 is derived from g2465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21201786	21202133	.	+	.	Ledus.S1G244700
Ledus.S1	AUGUSTUS	transcript	21201786	21202133	.	+	.	transcript_id "Ledus.S1G244700.t1"; gene_id "Ledus.S1G244700"
Ledus.S1	AUGUSTUS	start_codon	21201786	21201788	.	+	0	transcript_id "Ledus.S1G244700.t1"; gene_id "Ledus.S1G244700"
Ledus.S1	AUGUSTUS	CDS	21201786	21202133	0.87	+	0	transcript_id "Ledus.S1G244700.t1"; gene_id "Ledus.S1G244700"
Ledus.S1	AUGUSTUS	exon	21201786	21202133	.	+	.	transcript_id "Ledus.S1G244700.t1"; gene_id "Ledus.S1G244700"
Ledus.S1	AUGUSTUS	stop_codon	21202134	21202136	.	+	0	transcript_id "Ledus.S1G244700.t1"; gene_id "Ledus.S1G244700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3423.t1 is derived from g858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8240270	8245765	.	-	.	Ledus.S1G084400
Ledus.S1	AUGUSTUS	transcript	8241340	8245765	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	stop_codon	8241337	8241339	.	-	0	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8241340	8241560	1	-	2	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8241340	8241560	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8241561	8241972	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8241973	8242084	0.99	-	0	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8241973	8242084	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8242085	8242193	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8242194	8242350	0.99	-	1	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8242194	8242350	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8242351	8242430	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8242431	8242570	1	-	0	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8242431	8242570	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8242571	8242834	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8242835	8242975	1	-	0	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8242835	8242975	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8242976	8243063	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8243064	8243273	1	-	0	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8243064	8243273	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8243274	8243423	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8243424	8243643	1	-	1	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8243424	8243643	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8243644	8243768	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8243769	8243947	1	-	0	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8243769	8243947	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8243948	8244035	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8244036	8244135	1	-	1	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8244036	8244135	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8244136	8244320	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8244321	8244499	1	-	0	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8244321	8244499	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8244500	8244697	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8244698	8244823	1	-	0	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8244698	8244823	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8244824	8244972	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8244973	8245312	1	-	1	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8244973	8245312	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8245313	8245460	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8245461	8245644	1	-	2	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8245461	8245644	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8245645	8245743	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8245744	8245765	0.98	-	0	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8245744	8245765	.	-	.	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	start_codon	8245763	8245765	.	-	0	transcript_id "Ledus.S1G084400.t1"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	transcript	8240270	8245765	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	stop_codon	8240267	8240269	.	-	0	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8240270	8240479	0.82	-	0	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8240270	8240479	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8240480	8240560	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8240561	8240734	0.54	-	0	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8240561	8240734	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8240735	8240944	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8240945	8240973	0.96	-	2	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8240945	8240973	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8240974	8241972	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8241973	8242084	0.99	-	0	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8241973	8242084	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8242085	8242193	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8242194	8242350	1	-	1	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8242194	8242350	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8242351	8242430	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8242431	8242570	1	-	0	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8242431	8242570	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8242571	8242834	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8242835	8242975	1	-	0	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8242835	8242975	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8242976	8243063	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8243064	8243273	1	-	0	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8243064	8243273	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8243274	8243423	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8243424	8243643	1	-	1	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8243424	8243643	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8243644	8243768	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8243769	8243947	1	-	0	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8243769	8243947	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8243948	8244035	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8244036	8244135	1	-	1	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8244036	8244135	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8244136	8244320	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8244321	8244499	1	-	0	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8244321	8244499	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8244500	8244697	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8244698	8244823	1	-	0	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8244698	8244823	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8244824	8244972	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8244973	8245312	1	-	1	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8244973	8245312	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8245313	8245460	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8245461	8245644	1	-	2	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8245461	8245644	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	intron	8245645	8245743	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	CDS	8245744	8245765	0.94	-	0	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	exon	8245744	8245765	.	-	.	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
Ledus.S1	AUGUSTUS	start_codon	8245763	8245765	.	-	0	transcript_id "Ledus.S1G084400.t2"; gene_id "Ledus.S1G084400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12593.t1 is derived from g6215.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13029201	13030580	.	+	.	Ledus.S4G174900
Ledus.S4	AUGUSTUS	transcript	13029201	13030580	.	+	.	transcript_id "Ledus.S4G174900.t1"; gene_id "Ledus.S4G174900"
Ledus.S4	AUGUSTUS	start_codon	13029201	13029203	.	+	0	transcript_id "Ledus.S4G174900.t1"; gene_id "Ledus.S4G174900"
Ledus.S4	AUGUSTUS	CDS	13029201	13030580	0.64	+	0	transcript_id "Ledus.S4G174900.t1"; gene_id "Ledus.S4G174900"
Ledus.S4	AUGUSTUS	exon	13029201	13030580	.	+	.	transcript_id "Ledus.S4G174900.t1"; gene_id "Ledus.S4G174900"
Ledus.S4	AUGUSTUS	stop_codon	13030581	13030583	.	+	0	transcript_id "Ledus.S4G174900.t1"; gene_id "Ledus.S4G174900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4298.t1 is derived from g1734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16105082	16107899	.	+	.	Ledus.S1G171900
Ledus.S1	AUGUSTUS	transcript	16105082	16107899	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	start_codon	16105082	16105084	.	+	0	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16105082	16105172	1	+	0	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16105082	16105172	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16105173	16105253	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16105254	16105359	1	+	2	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16105254	16105359	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16105360	16105445	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16105446	16105513	1	+	1	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16105446	16105513	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16105514	16105647	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16105648	16105780	1	+	2	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16105648	16105780	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16105781	16105881	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16105882	16105981	1	+	1	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16105882	16105981	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16105982	16106054	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16106055	16106167	1	+	0	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16106055	16106167	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16106168	16106278	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16106279	16106372	1	+	1	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16106279	16106372	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16106373	16106535	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16106536	16106683	0.91	+	0	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16106536	16106683	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16106684	16106793	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16106794	16106940	0.91	+	2	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16106794	16106940	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16106941	16107045	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16107046	16107119	0.99	+	2	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16107046	16107119	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16107120	16107329	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16107330	16107418	1	+	0	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16107330	16107418	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16107419	16107514	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16107515	16107629	1	+	1	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16107515	16107629	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16107630	16107716	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16107717	16107899	0.96	+	0	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16107717	16107899	.	+	.	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	stop_codon	16107900	16107902	.	+	0	transcript_id "Ledus.S1G171900.t1"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	transcript	16105082	16107899	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	start_codon	16105082	16105084	.	+	0	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16105082	16105172	1	+	0	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16105082	16105172	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16105173	16105253	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16105254	16105359	1	+	2	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16105254	16105359	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16105360	16105445	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16105446	16105513	1	+	1	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16105446	16105513	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16105514	16105647	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16105648	16105780	1	+	2	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16105648	16105780	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16105781	16105881	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16105882	16105981	1	+	1	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16105882	16105981	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16105982	16106054	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16106055	16106167	1	+	0	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16106055	16106167	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16106168	16106278	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16106279	16106372	0.99	+	1	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16106279	16106372	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16106373	16106535	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16106536	16106562	0.67	+	0	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16106536	16106562	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16106563	16106636	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16106637	16106706	0.55	+	0	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16106637	16106706	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16106707	16106793	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16106794	16106940	1	+	2	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16106794	16106940	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16106941	16107045	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16107046	16107119	0.99	+	2	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16107046	16107119	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16107120	16107329	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16107330	16107418	1	+	0	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16107330	16107418	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16107419	16107514	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16107515	16107629	1	+	1	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16107515	16107629	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	intron	16107630	16107716	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	CDS	16107717	16107899	0.97	+	0	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	exon	16107717	16107899	.	+	.	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
Ledus.S1	AUGUSTUS	stop_codon	16107900	16107902	.	+	0	transcript_id "Ledus.S1G171900.t2"; gene_id "Ledus.S1G171900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg645.t1 is derived from g7506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3860712	3861808	.	+	.	Ledus.S2G052700
Ledus.S2	AUGUSTUS	transcript	3860712	3861808	.	+	.	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	start_codon	3860712	3860714	.	+	0	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	CDS	3860712	3860768	0.95	+	0	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	exon	3860712	3860768	.	+	.	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	intron	3860769	3860902	.	+	.	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	CDS	3860903	3861135	1	+	0	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	exon	3860903	3861135	.	+	.	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	intron	3861136	3861213	.	+	.	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	CDS	3861214	3861331	1	+	1	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	exon	3861214	3861331	.	+	.	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	intron	3861332	3861424	.	+	.	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	CDS	3861425	3861607	1	+	0	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	exon	3861425	3861607	.	+	.	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	intron	3861608	3861709	.	+	.	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	CDS	3861710	3861808	1	+	0	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	exon	3861710	3861808	.	+	.	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
Ledus.S2	AUGUSTUS	stop_codon	3861809	3861811	.	+	0	transcript_id "Ledus.S2G052700.t1"; gene_id "Ledus.S2G052700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6876.t1 is derived from g4320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34910772	34915526	.	-	.	Ledus.S1G429700
Ledus.S1	AUGUSTUS	transcript	34910772	34915526	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	stop_codon	34910769	34910771	.	-	0	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	CDS	34910772	34910978	0.92	-	0	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	exon	34910772	34910978	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	intron	34910979	34911136	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	CDS	34911137	34911277	1	-	0	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	exon	34911137	34911277	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	intron	34911278	34911382	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	CDS	34911383	34911524	0.99	-	1	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	exon	34911383	34911524	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	intron	34911525	34911622	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	CDS	34911623	34912784	1	-	2	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	exon	34911623	34912784	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	intron	34912785	34913018	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	CDS	34913019	34913144	1	-	2	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	exon	34913019	34913144	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	intron	34913145	34913316	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	CDS	34913317	34913577	1	-	2	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	exon	34913317	34913577	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	intron	34913578	34913734	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	CDS	34913735	34913984	1	-	0	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	exon	34913735	34913984	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	intron	34913985	34914107	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	CDS	34914108	34914185	0.99	-	0	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	exon	34914108	34914185	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	intron	34914186	34914266	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	CDS	34914267	34915526	0.97	-	0	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	exon	34914267	34915526	.	-	.	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
Ledus.S1	AUGUSTUS	start_codon	34915524	34915526	.	-	0	transcript_id "Ledus.S1G429700.t1"; gene_id "Ledus.S1G429700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11132.t1 is derived from g4750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2098306	2098758	.	-	.	Ledus.S4G028800
Ledus.S4	AUGUSTUS	transcript	2098306	2098758	.	-	.	transcript_id "Ledus.S4G028800.t1"; gene_id "Ledus.S4G028800"
Ledus.S4	AUGUSTUS	stop_codon	2098303	2098305	.	-	0	transcript_id "Ledus.S4G028800.t1"; gene_id "Ledus.S4G028800"
Ledus.S4	AUGUSTUS	CDS	2098306	2098374	0.82	-	0	transcript_id "Ledus.S4G028800.t1"; gene_id "Ledus.S4G028800"
Ledus.S4	AUGUSTUS	exon	2098306	2098374	.	-	.	transcript_id "Ledus.S4G028800.t1"; gene_id "Ledus.S4G028800"
Ledus.S4	AUGUSTUS	intron	2098375	2098473	.	-	.	transcript_id "Ledus.S4G028800.t1"; gene_id "Ledus.S4G028800"
Ledus.S4	AUGUSTUS	CDS	2098474	2098758	0.76	-	0	transcript_id "Ledus.S4G028800.t1"; gene_id "Ledus.S4G028800"
Ledus.S4	AUGUSTUS	exon	2098474	2098758	.	-	.	transcript_id "Ledus.S4G028800.t1"; gene_id "Ledus.S4G028800"
Ledus.S4	AUGUSTUS	start_codon	2098756	2098758	.	-	0	transcript_id "Ledus.S4G028800.t1"; gene_id "Ledus.S4G028800"
# This transcript jg4403.t2 is derived from g1839.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4404.t1 is derived from g1840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16921371	16921978	.	-	.	Ledus.S1G182500
Ledus.S1	AUGUSTUS	transcript	16921371	16921978	.	-	.	transcript_id "Ledus.S1G182500.t1"; gene_id "Ledus.S1G182500"
Ledus.S1	AUGUSTUS	stop_codon	16921368	16921370	.	-	0	transcript_id "Ledus.S1G182500.t1"; gene_id "Ledus.S1G182500"
Ledus.S1	AUGUSTUS	CDS	16921371	16921377	0.72	-	1	transcript_id "Ledus.S1G182500.t1"; gene_id "Ledus.S1G182500"
Ledus.S1	AUGUSTUS	exon	16921371	16921377	.	-	.	transcript_id "Ledus.S1G182500.t1"; gene_id "Ledus.S1G182500"
Ledus.S1	AUGUSTUS	intron	16921378	16921520	.	-	.	transcript_id "Ledus.S1G182500.t1"; gene_id "Ledus.S1G182500"
Ledus.S1	AUGUSTUS	CDS	16921521	16921978	0.53	-	0	transcript_id "Ledus.S1G182500.t1"; gene_id "Ledus.S1G182500"
Ledus.S1	AUGUSTUS	exon	16921521	16921978	.	-	.	transcript_id "Ledus.S1G182500.t1"; gene_id "Ledus.S1G182500"
Ledus.S1	AUGUSTUS	start_codon	16921976	16921978	.	-	0	transcript_id "Ledus.S1G182500.t1"; gene_id "Ledus.S1G182500"
# This transcript jg12380.t2 is derived from g6001.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12381.t1 is derived from g6002.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11560296	11561931	.	-	.	Ledus.S4G153700
Ledus.S4	AUGUSTUS	transcript	11560296	11561931	.	-	.	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	stop_codon	11560293	11560295	.	-	0	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	CDS	11560296	11560586	1	-	0	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	exon	11560296	11560586	.	-	.	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	intron	11560587	11560677	.	-	.	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	CDS	11560678	11560779	1	-	0	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	exon	11560678	11560779	.	-	.	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	intron	11560780	11560852	.	-	.	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	CDS	11560853	11561048	0.69	-	1	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	exon	11560853	11561048	.	-	.	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	intron	11561049	11561230	.	-	.	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	CDS	11561231	11561272	0.91	-	1	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	exon	11561231	11561272	.	-	.	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	intron	11561273	11561346	.	-	.	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	CDS	11561347	11561409	1	-	1	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	exon	11561347	11561409	.	-	.	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	intron	11561410	11561596	.	-	.	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	CDS	11561597	11561931	0.98	-	0	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	exon	11561597	11561931	.	-	.	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	start_codon	11561929	11561931	.	-	0	transcript_id "Ledus.S4G153700.t1"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	transcript	11560463	11561931	.	-	.	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	stop_codon	11560460	11560462	.	-	0	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	CDS	11560463	11560569	0.91	-	2	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	exon	11560463	11560569	.	-	.	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	intron	11560570	11560652	.	-	.	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	CDS	11560653	11560779	0.92	-	0	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	exon	11560653	11560779	.	-	.	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	intron	11560780	11560852	.	-	.	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	CDS	11560853	11561048	0.56	-	1	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	exon	11560853	11561048	.	-	.	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	intron	11561049	11561230	.	-	.	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	CDS	11561231	11561272	0.93	-	1	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	exon	11561231	11561272	.	-	.	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	intron	11561273	11561346	.	-	.	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	CDS	11561347	11561409	1	-	1	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	exon	11561347	11561409	.	-	.	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	intron	11561410	11561596	.	-	.	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	CDS	11561597	11561931	0.95	-	0	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	exon	11561597	11561931	.	-	.	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
Ledus.S4	AUGUSTUS	start_codon	11561929	11561931	.	-	0	transcript_id "Ledus.S4G153700.t2"; gene_id "Ledus.S4G153700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg677.t1 is derived from g7538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4063486	4063791	.	+	.	Ledus.S2G055900
Ledus.S2	AUGUSTUS	transcript	4063486	4063791	.	+	.	transcript_id "Ledus.S2G055900.t1"; gene_id "Ledus.S2G055900"
Ledus.S2	AUGUSTUS	start_codon	4063486	4063488	.	+	0	transcript_id "Ledus.S2G055900.t1"; gene_id "Ledus.S2G055900"
Ledus.S2	AUGUSTUS	CDS	4063486	4063791	0.82	+	0	transcript_id "Ledus.S2G055900.t1"; gene_id "Ledus.S2G055900"
Ledus.S2	AUGUSTUS	exon	4063486	4063791	.	+	.	transcript_id "Ledus.S2G055900.t1"; gene_id "Ledus.S2G055900"
Ledus.S2	AUGUSTUS	stop_codon	4063792	4063794	.	+	0	transcript_id "Ledus.S2G055900.t1"; gene_id "Ledus.S2G055900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10183.t1 is derived from g11213.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13479463	13480014	.	-	.	Ledus.S3G166000
Ledus.S3	AUGUSTUS	transcript	13479463	13480014	.	-	.	transcript_id "Ledus.S3G166000.t1"; gene_id "Ledus.S3G166000"
Ledus.S3	AUGUSTUS	stop_codon	13479460	13479462	.	-	0	transcript_id "Ledus.S3G166000.t1"; gene_id "Ledus.S3G166000"
Ledus.S3	AUGUSTUS	CDS	13479463	13479515	0.49	-	2	transcript_id "Ledus.S3G166000.t1"; gene_id "Ledus.S3G166000"
Ledus.S3	AUGUSTUS	exon	13479463	13479515	.	-	.	transcript_id "Ledus.S3G166000.t1"; gene_id "Ledus.S3G166000"
Ledus.S3	AUGUSTUS	intron	13479516	13479695	.	-	.	transcript_id "Ledus.S3G166000.t1"; gene_id "Ledus.S3G166000"
Ledus.S3	AUGUSTUS	CDS	13479696	13479866	0.43	-	2	transcript_id "Ledus.S3G166000.t1"; gene_id "Ledus.S3G166000"
Ledus.S3	AUGUSTUS	exon	13479696	13479866	.	-	.	transcript_id "Ledus.S3G166000.t1"; gene_id "Ledus.S3G166000"
Ledus.S3	AUGUSTUS	intron	13479867	13479938	.	-	.	transcript_id "Ledus.S3G166000.t1"; gene_id "Ledus.S3G166000"
Ledus.S3	AUGUSTUS	CDS	13479939	13480014	0.49	-	0	transcript_id "Ledus.S3G166000.t1"; gene_id "Ledus.S3G166000"
Ledus.S3	AUGUSTUS	exon	13479939	13480014	.	-	.	transcript_id "Ledus.S3G166000.t1"; gene_id "Ledus.S3G166000"
Ledus.S3	AUGUSTUS	start_codon	13480012	13480014	.	-	0	transcript_id "Ledus.S3G166000.t1"; gene_id "Ledus.S3G166000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5589.t1 is derived from g3028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25296971	25298291	.	+	.	Ledus.S1G301000
Ledus.S1	AUGUSTUS	transcript	25296971	25298291	.	+	.	transcript_id "Ledus.S1G301000.t1"; gene_id "Ledus.S1G301000"
Ledus.S1	AUGUSTUS	start_codon	25296971	25296973	.	+	0	transcript_id "Ledus.S1G301000.t1"; gene_id "Ledus.S1G301000"
Ledus.S1	AUGUSTUS	CDS	25296971	25297028	0.78	+	0	transcript_id "Ledus.S1G301000.t1"; gene_id "Ledus.S1G301000"
Ledus.S1	AUGUSTUS	exon	25296971	25297028	.	+	.	transcript_id "Ledus.S1G301000.t1"; gene_id "Ledus.S1G301000"
Ledus.S1	AUGUSTUS	intron	25297029	25297107	.	+	.	transcript_id "Ledus.S1G301000.t1"; gene_id "Ledus.S1G301000"
Ledus.S1	AUGUSTUS	CDS	25297108	25298291	0.37	+	2	transcript_id "Ledus.S1G301000.t1"; gene_id "Ledus.S1G301000"
Ledus.S1	AUGUSTUS	exon	25297108	25298291	.	+	.	transcript_id "Ledus.S1G301000.t1"; gene_id "Ledus.S1G301000"
Ledus.S1	AUGUSTUS	stop_codon	25298292	25298294	.	+	0	transcript_id "Ledus.S1G301000.t1"; gene_id "Ledus.S1G301000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12469.t1 is derived from g6090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12181562	12182389	.	+	.	Ledus.S4G162500
Ledus.S4	AUGUSTUS	transcript	12181562	12182389	.	+	.	transcript_id "Ledus.S4G162500.t1"; gene_id "Ledus.S4G162500"
Ledus.S4	AUGUSTUS	start_codon	12181562	12181564	.	+	0	transcript_id "Ledus.S4G162500.t1"; gene_id "Ledus.S4G162500"
Ledus.S4	AUGUSTUS	CDS	12181562	12182389	0.96	+	0	transcript_id "Ledus.S4G162500.t1"; gene_id "Ledus.S4G162500"
Ledus.S4	AUGUSTUS	exon	12181562	12182389	.	+	.	transcript_id "Ledus.S4G162500.t1"; gene_id "Ledus.S4G162500"
Ledus.S4	AUGUSTUS	stop_codon	12182390	12182392	.	+	0	transcript_id "Ledus.S4G162500.t1"; gene_id "Ledus.S4G162500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9953.t1 is derived from g10983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11441294	11441800	.	+	.	Ledus.S3G143000
Ledus.S3	AUGUSTUS	transcript	11441406	11441800	.	+	.	transcript_id "Ledus.S3G143000.t1"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	start_codon	11441406	11441408	.	+	0	transcript_id "Ledus.S3G143000.t1"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	CDS	11441406	11441415	1	+	0	transcript_id "Ledus.S3G143000.t1"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	exon	11441406	11441415	.	+	.	transcript_id "Ledus.S3G143000.t1"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	intron	11441416	11441609	.	+	.	transcript_id "Ledus.S3G143000.t1"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	CDS	11441610	11441800	0.97	+	2	transcript_id "Ledus.S3G143000.t1"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	exon	11441610	11441800	.	+	.	transcript_id "Ledus.S3G143000.t1"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	stop_codon	11441801	11441803	.	+	0	transcript_id "Ledus.S3G143000.t1"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	transcript	11441294	11441800	.	+	.	transcript_id "Ledus.S3G143000.t2"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	start_codon	11441294	11441296	.	+	0	transcript_id "Ledus.S3G143000.t2"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	CDS	11441294	11441420	0.85	+	0	transcript_id "Ledus.S3G143000.t2"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	exon	11441294	11441420	.	+	.	transcript_id "Ledus.S3G143000.t2"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	intron	11441421	11441609	.	+	.	transcript_id "Ledus.S3G143000.t2"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	CDS	11441610	11441800	0.95	+	2	transcript_id "Ledus.S3G143000.t2"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	exon	11441610	11441800	.	+	.	transcript_id "Ledus.S3G143000.t2"; gene_id "Ledus.S3G143000"
Ledus.S3	AUGUSTUS	stop_codon	11441801	11441803	.	+	0	transcript_id "Ledus.S3G143000.t2"; gene_id "Ledus.S3G143000"
# This transcript jg10547.t2 is derived from g11577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10548.t1 is derived from g11578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16059689	16061547	.	+	.	Ledus.S3G202500
Ledus.S3	AUGUSTUS	transcript	16059689	16061547	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	start_codon	16059689	16059691	.	+	0	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	CDS	16059689	16059855	0.21	+	0	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	exon	16059689	16059855	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	intron	16059856	16059973	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	CDS	16059974	16060169	0.89	+	1	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	exon	16059974	16060169	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	intron	16060170	16060271	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	CDS	16060272	16060442	0.97	+	0	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	exon	16060272	16060442	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	intron	16060443	16060506	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	CDS	16060507	16060727	0.47	+	0	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	exon	16060507	16060727	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	intron	16060728	16060829	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	CDS	16060830	16060983	0.7	+	1	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	exon	16060830	16060983	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	intron	16060984	16061083	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	CDS	16061084	16061143	0.92	+	0	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	exon	16061084	16061143	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	intron	16061144	16061250	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	CDS	16061251	16061349	1	+	0	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	exon	16061251	16061349	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	intron	16061350	16061433	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	CDS	16061434	16061547	0.85	+	0	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	exon	16061434	16061547	.	+	.	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
Ledus.S3	AUGUSTUS	stop_codon	16061548	16061550	.	+	0	transcript_id "Ledus.S3G202500.t1"; gene_id "Ledus.S3G202500"
# This transcript jg7070.t2 is derived from g6601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7071.t1 is derived from g6602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1198440	1200761	.	+	.	Ledus.C7G013200
Ledus.C7	AUGUSTUS	transcript	1198440	1200761	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	start_codon	1198440	1198442	.	+	0	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	CDS	1198440	1198764	0.9	+	0	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	exon	1198440	1198764	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	intron	1198765	1198854	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	CDS	1198855	1198976	1	+	2	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	exon	1198855	1198976	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	intron	1198977	1199059	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	CDS	1199060	1199125	1	+	0	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	exon	1199060	1199125	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	intron	1199126	1199361	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	CDS	1199362	1199559	1	+	0	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	exon	1199362	1199559	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	intron	1199560	1199717	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	CDS	1199718	1199836	1	+	0	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	exon	1199718	1199836	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	intron	1199837	1199971	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	CDS	1199972	1200077	1	+	1	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	exon	1199972	1200077	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	intron	1200078	1200227	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	CDS	1200228	1200761	0.97	+	0	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	exon	1200228	1200761	.	+	.	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
Ledus.C7	AUGUSTUS	stop_codon	1200762	1200764	.	+	0	transcript_id "Ledus.C7G013200.t1"; gene_id "Ledus.C7G013200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9384.t1 is derived from g10414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6457565	6462125	.	+	.	Ledus.S3G086100
Ledus.S3	AUGUSTUS	transcript	6457565	6462125	.	+	.	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	start_codon	6457565	6457567	.	+	0	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	CDS	6457565	6457726	1	+	0	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	exon	6457565	6457726	.	+	.	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	intron	6457727	6457810	.	+	.	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	CDS	6457811	6458137	1	+	0	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	exon	6457811	6458137	.	+	.	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	intron	6458138	6458221	.	+	.	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	CDS	6458222	6461457	1	+	0	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	exon	6458222	6461457	.	+	.	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	intron	6461458	6461592	.	+	.	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	CDS	6461593	6461706	1	+	1	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	exon	6461593	6461706	.	+	.	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	intron	6461707	6461788	.	+	.	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	CDS	6461789	6462125	0.95	+	1	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	exon	6461789	6462125	.	+	.	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
Ledus.S3	AUGUSTUS	stop_codon	6462126	6462128	.	+	0	transcript_id "Ledus.S3G086100.t1"; gene_id "Ledus.S3G086100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2260.t1 is derived from g9123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16653930	16655378	.	-	.	Ledus.S2G214200
Ledus.S2	AUGUSTUS	transcript	16653930	16655378	.	-	.	transcript_id "Ledus.S2G214200.t1"; gene_id "Ledus.S2G214200"
Ledus.S2	AUGUSTUS	stop_codon	16653927	16653929	.	-	0	transcript_id "Ledus.S2G214200.t1"; gene_id "Ledus.S2G214200"
Ledus.S2	AUGUSTUS	CDS	16653930	16655099	0.88	-	0	transcript_id "Ledus.S2G214200.t1"; gene_id "Ledus.S2G214200"
Ledus.S2	AUGUSTUS	exon	16653930	16655099	.	-	.	transcript_id "Ledus.S2G214200.t1"; gene_id "Ledus.S2G214200"
Ledus.S2	AUGUSTUS	intron	16655100	16655177	.	-	.	transcript_id "Ledus.S2G214200.t1"; gene_id "Ledus.S2G214200"
Ledus.S2	AUGUSTUS	CDS	16655178	16655378	0.75	-	0	transcript_id "Ledus.S2G214200.t1"; gene_id "Ledus.S2G214200"
Ledus.S2	AUGUSTUS	exon	16655178	16655378	.	-	.	transcript_id "Ledus.S2G214200.t1"; gene_id "Ledus.S2G214200"
Ledus.S2	AUGUSTUS	start_codon	16655376	16655378	.	-	0	transcript_id "Ledus.S2G214200.t1"; gene_id "Ledus.S2G214200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10403.t1 is derived from g11433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14835834	14839165	.	+	.	Ledus.S3G188000
Ledus.S3	AUGUSTUS	transcript	14835834	14839165	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	start_codon	14835834	14835836	.	+	0	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14835834	14835920	1	+	0	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14835834	14835920	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14835921	14835999	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14836000	14836105	1	+	0	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14836000	14836105	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14836106	14836195	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14836196	14836218	1	+	2	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14836196	14836218	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14836219	14836311	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14836312	14836364	1	+	0	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14836312	14836364	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14836365	14836448	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14836449	14836463	0.55	+	1	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14836449	14836463	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14836464	14836624	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14836625	14836680	0.91	+	1	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14836625	14836680	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14836681	14837040	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14837041	14837186	0.72	+	2	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14837041	14837186	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14837187	14837318	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14837319	14837588	0.73	+	0	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14837319	14837588	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14837589	14837732	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14837733	14837852	0.99	+	0	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14837733	14837852	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14837853	14837968	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14837969	14838063	0.96	+	0	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14837969	14838063	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14838064	14838244	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14838245	14838338	1	+	1	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14838245	14838338	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14838339	14838430	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14838431	14838562	1	+	0	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14838431	14838562	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14838563	14838644	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14838645	14838749	1	+	0	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14838645	14838749	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14838750	14838841	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14838842	14838892	1	+	0	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14838842	14838892	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	intron	14838893	14838976	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	CDS	14838977	14839165	1	+	0	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	exon	14838977	14839165	.	+	.	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
Ledus.S3	AUGUSTUS	stop_codon	14839166	14839168	.	+	0	transcript_id "Ledus.S3G188000.t1"; gene_id "Ledus.S3G188000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5149.t1 is derived from g2588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21975902	21976575	.	+	.	Ledus.S1G257000
Ledus.S1	AUGUSTUS	transcript	21975902	21976575	.	+	.	transcript_id "Ledus.S1G257000.t1"; gene_id "Ledus.S1G257000"
Ledus.S1	AUGUSTUS	start_codon	21975902	21975904	.	+	0	transcript_id "Ledus.S1G257000.t1"; gene_id "Ledus.S1G257000"
Ledus.S1	AUGUSTUS	CDS	21975902	21975944	0.98	+	0	transcript_id "Ledus.S1G257000.t1"; gene_id "Ledus.S1G257000"
Ledus.S1	AUGUSTUS	exon	21975902	21975944	.	+	.	transcript_id "Ledus.S1G257000.t1"; gene_id "Ledus.S1G257000"
Ledus.S1	AUGUSTUS	intron	21975945	21976038	.	+	.	transcript_id "Ledus.S1G257000.t1"; gene_id "Ledus.S1G257000"
Ledus.S1	AUGUSTUS	CDS	21976039	21976159	0.68	+	2	transcript_id "Ledus.S1G257000.t1"; gene_id "Ledus.S1G257000"
Ledus.S1	AUGUSTUS	exon	21976039	21976159	.	+	.	transcript_id "Ledus.S1G257000.t1"; gene_id "Ledus.S1G257000"
Ledus.S1	AUGUSTUS	intron	21976160	21976340	.	+	.	transcript_id "Ledus.S1G257000.t1"; gene_id "Ledus.S1G257000"
Ledus.S1	AUGUSTUS	CDS	21976341	21976575	0.48	+	1	transcript_id "Ledus.S1G257000.t1"; gene_id "Ledus.S1G257000"
Ledus.S1	AUGUSTUS	exon	21976341	21976575	.	+	.	transcript_id "Ledus.S1G257000.t1"; gene_id "Ledus.S1G257000"
Ledus.S1	AUGUSTUS	stop_codon	21976576	21976578	.	+	0	transcript_id "Ledus.S1G257000.t1"; gene_id "Ledus.S1G257000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12594.t1 is derived from g6216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13030881	13031480	.	+	.	Ledus.S4G175000
Ledus.S4	AUGUSTUS	transcript	13030881	13031480	.	+	.	transcript_id "Ledus.S4G175000.t1"; gene_id "Ledus.S4G175000"
Ledus.S4	AUGUSTUS	start_codon	13030881	13030883	.	+	0	transcript_id "Ledus.S4G175000.t1"; gene_id "Ledus.S4G175000"
Ledus.S4	AUGUSTUS	CDS	13030881	13031480	0.62	+	0	transcript_id "Ledus.S4G175000.t1"; gene_id "Ledus.S4G175000"
Ledus.S4	AUGUSTUS	exon	13030881	13031480	.	+	.	transcript_id "Ledus.S4G175000.t1"; gene_id "Ledus.S4G175000"
Ledus.S4	AUGUSTUS	stop_codon	13031481	13031483	.	+	0	transcript_id "Ledus.S4G175000.t1"; gene_id "Ledus.S4G175000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1196.t1 is derived from g8057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8511666	8513158	.	-	.	Ledus.S2G107800
Ledus.S2	AUGUSTUS	transcript	8511666	8513158	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	stop_codon	8511663	8511665	.	-	0	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	CDS	8511666	8511669	0.97	-	1	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	exon	8511666	8511669	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	intron	8511670	8511808	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	CDS	8511809	8511884	0.5	-	2	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	exon	8511809	8511884	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	intron	8511885	8512047	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	CDS	8512048	8512056	0.25	-	2	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	exon	8512048	8512056	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	intron	8512057	8512151	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	CDS	8512152	8512164	0.37	-	0	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	exon	8512152	8512164	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	intron	8512165	8512232	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	CDS	8512233	8512264	0.37	-	2	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	exon	8512233	8512264	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	intron	8512265	8512744	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	CDS	8512745	8512829	0.4	-	0	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	exon	8512745	8512829	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	intron	8512830	8512972	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	CDS	8512973	8512999	0.4	-	0	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	exon	8512973	8512999	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	intron	8513000	8513083	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	CDS	8513084	8513158	0.38	-	0	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	exon	8513084	8513158	.	-	.	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
Ledus.S2	AUGUSTUS	start_codon	8513156	8513158	.	-	0	transcript_id "Ledus.S2G107800.t1"; gene_id "Ledus.S2G107800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg639.t1 is derived from g7500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3836966	3837589	.	+	.	Ledus.S2G052100
Ledus.S2	AUGUSTUS	transcript	3836966	3837589	.	+	.	transcript_id "Ledus.S2G052100.t1"; gene_id "Ledus.S2G052100"
Ledus.S2	AUGUSTUS	start_codon	3836966	3836968	.	+	0	transcript_id "Ledus.S2G052100.t1"; gene_id "Ledus.S2G052100"
Ledus.S2	AUGUSTUS	CDS	3836966	3837589	0.39	+	0	transcript_id "Ledus.S2G052100.t1"; gene_id "Ledus.S2G052100"
Ledus.S2	AUGUSTUS	exon	3836966	3837589	.	+	.	transcript_id "Ledus.S2G052100.t1"; gene_id "Ledus.S2G052100"
Ledus.S2	AUGUSTUS	stop_codon	3837590	3837592	.	+	0	transcript_id "Ledus.S2G052100.t1"; gene_id "Ledus.S2G052100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9265.t1 is derived from g10295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5666871	5667749	.	-	.	Ledus.S3G074200
Ledus.S3	AUGUSTUS	transcript	5666871	5667749	.	-	.	transcript_id "Ledus.S3G074200.t1"; gene_id "Ledus.S3G074200"
Ledus.S3	AUGUSTUS	stop_codon	5666868	5666870	.	-	0	transcript_id "Ledus.S3G074200.t1"; gene_id "Ledus.S3G074200"
Ledus.S3	AUGUSTUS	CDS	5666871	5667381	0.78	-	1	transcript_id "Ledus.S3G074200.t1"; gene_id "Ledus.S3G074200"
Ledus.S3	AUGUSTUS	exon	5666871	5667381	.	-	.	transcript_id "Ledus.S3G074200.t1"; gene_id "Ledus.S3G074200"
Ledus.S3	AUGUSTUS	intron	5667382	5667579	.	-	.	transcript_id "Ledus.S3G074200.t1"; gene_id "Ledus.S3G074200"
Ledus.S3	AUGUSTUS	CDS	5667580	5667749	0.74	-	0	transcript_id "Ledus.S3G074200.t1"; gene_id "Ledus.S3G074200"
Ledus.S3	AUGUSTUS	exon	5667580	5667749	.	-	.	transcript_id "Ledus.S3G074200.t1"; gene_id "Ledus.S3G074200"
Ledus.S3	AUGUSTUS	start_codon	5667747	5667749	.	-	0	transcript_id "Ledus.S3G074200.t1"; gene_id "Ledus.S3G074200"
# This transcript jg4136.t2 is derived from g1572.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4137.t1 is derived from g1573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14906417	14906977	.	-	.	Ledus.S1G155800
Ledus.S1	AUGUSTUS	transcript	14906417	14906977	.	-	.	transcript_id "Ledus.S1G155800.t1"; gene_id "Ledus.S1G155800"
Ledus.S1	AUGUSTUS	stop_codon	14906414	14906416	.	-	0	transcript_id "Ledus.S1G155800.t1"; gene_id "Ledus.S1G155800"
Ledus.S1	AUGUSTUS	CDS	14906417	14906977	0.99	-	0	transcript_id "Ledus.S1G155800.t1"; gene_id "Ledus.S1G155800"
Ledus.S1	AUGUSTUS	exon	14906417	14906977	.	-	.	transcript_id "Ledus.S1G155800.t1"; gene_id "Ledus.S1G155800"
Ledus.S1	AUGUSTUS	start_codon	14906975	14906977	.	-	0	transcript_id "Ledus.S1G155800.t1"; gene_id "Ledus.S1G155800"
# This transcript jg2603.t2 is derived from g36.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2604.t1 is derived from g37.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	365677	367726	.	-	.	Ledus.S1G002500
Ledus.S1	AUGUSTUS	transcript	365677	367726	.	-	.	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	stop_codon	365674	365676	.	-	0	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	CDS	365677	366022	0.58	-	1	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	exon	365677	366022	.	-	.	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	intron	366023	366119	.	-	.	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	CDS	366120	366412	1	-	0	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	exon	366120	366412	.	-	.	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	intron	366413	366512	.	-	.	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	CDS	366513	366678	0.81	-	1	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	exon	366513	366678	.	-	.	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	intron	366679	366794	.	-	.	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	CDS	366795	366896	0.86	-	1	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	exon	366795	366896	.	-	.	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	intron	366897	367122	.	-	.	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	CDS	367123	367134	0.82	-	1	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	exon	367123	367134	.	-	.	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	intron	367135	367283	.	-	.	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	CDS	367284	367726	0.61	-	0	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	exon	367284	367726	.	-	.	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
Ledus.S1	AUGUSTUS	start_codon	367724	367726	.	-	0	transcript_id "Ledus.S1G002500.t1"; gene_id "Ledus.S1G002500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12672.t1 is derived from g6294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13812497	13813375	.	+	.	Ledus.S4G182800
Ledus.S4	AUGUSTUS	transcript	13812497	13813375	.	+	.	transcript_id "Ledus.S4G182800.t1"; gene_id "Ledus.S4G182800"
Ledus.S4	AUGUSTUS	start_codon	13812497	13812499	.	+	0	transcript_id "Ledus.S4G182800.t1"; gene_id "Ledus.S4G182800"
Ledus.S4	AUGUSTUS	CDS	13812497	13813375	0.88	+	0	transcript_id "Ledus.S4G182800.t1"; gene_id "Ledus.S4G182800"
Ledus.S4	AUGUSTUS	exon	13812497	13813375	.	+	.	transcript_id "Ledus.S4G182800.t1"; gene_id "Ledus.S4G182800"
Ledus.S4	AUGUSTUS	stop_codon	13813376	13813378	.	+	0	transcript_id "Ledus.S4G182800.t1"; gene_id "Ledus.S4G182800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12999.t1 is derived from g6809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2172078	2172293	.	+	.	Ledus.S6G006100
Ledus.S6	AUGUSTUS	transcript	2172078	2172293	.	+	.	transcript_id "Ledus.S6G006100.t1"; gene_id "Ledus.S6G006100"
Ledus.S6	AUGUSTUS	start_codon	2172078	2172080	.	+	0	transcript_id "Ledus.S6G006100.t1"; gene_id "Ledus.S6G006100"
Ledus.S6	AUGUSTUS	CDS	2172078	2172293	0.65	+	0	transcript_id "Ledus.S6G006100.t1"; gene_id "Ledus.S6G006100"
Ledus.S6	AUGUSTUS	exon	2172078	2172293	.	+	.	transcript_id "Ledus.S6G006100.t1"; gene_id "Ledus.S6G006100"
Ledus.S6	AUGUSTUS	stop_codon	2172294	2172296	.	+	0	transcript_id "Ledus.S6G006100.t1"; gene_id "Ledus.S6G006100"
# This transcript jg3121.t2 is derived from g556.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3122.t1 is derived from g557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6146614	6147243	.	+	.	Ledus.S1G054300
Ledus.S1	AUGUSTUS	transcript	6146614	6147243	.	+	.	transcript_id "Ledus.S1G054300.t1"; gene_id "Ledus.S1G054300"
Ledus.S1	AUGUSTUS	start_codon	6146614	6146616	.	+	0	transcript_id "Ledus.S1G054300.t1"; gene_id "Ledus.S1G054300"
Ledus.S1	AUGUSTUS	CDS	6146614	6146808	0.8	+	0	transcript_id "Ledus.S1G054300.t1"; gene_id "Ledus.S1G054300"
Ledus.S1	AUGUSTUS	exon	6146614	6146808	.	+	.	transcript_id "Ledus.S1G054300.t1"; gene_id "Ledus.S1G054300"
Ledus.S1	AUGUSTUS	intron	6146809	6146967	.	+	.	transcript_id "Ledus.S1G054300.t1"; gene_id "Ledus.S1G054300"
Ledus.S1	AUGUSTUS	CDS	6146968	6147243	0.98	+	0	transcript_id "Ledus.S1G054300.t1"; gene_id "Ledus.S1G054300"
Ledus.S1	AUGUSTUS	exon	6146968	6147243	.	+	.	transcript_id "Ledus.S1G054300.t1"; gene_id "Ledus.S1G054300"
Ledus.S1	AUGUSTUS	stop_codon	6147244	6147246	.	+	0	transcript_id "Ledus.S1G054300.t1"; gene_id "Ledus.S1G054300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11991.t1 is derived from g5610.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8354856	8357860	.	-	.	Ledus.S4G114700
Ledus.S4	AUGUSTUS	transcript	8354856	8357860	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	stop_codon	8354853	8354855	.	-	0	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8354856	8354914	1	-	2	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8354856	8354914	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8354915	8354992	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8354993	8355172	0.99	-	2	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8354993	8355172	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8355173	8355244	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8355245	8355335	1	-	0	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8355245	8355335	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8355336	8355419	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8355420	8355468	0.67	-	1	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8355420	8355468	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8355469	8355585	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8355586	8355750	1	-	1	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8355586	8355750	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8355751	8355878	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8355879	8355925	1	-	0	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8355879	8355925	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8355926	8356079	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8356080	8356232	0.95	-	0	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8356080	8356232	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8356233	8356311	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8356312	8356377	1	-	0	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8356312	8356377	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8356378	8356554	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8356555	8356625	0.52	-	2	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8356555	8356625	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8356626	8356768	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8356769	8356873	0.94	-	2	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8356769	8356873	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8356874	8356966	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8356967	8356986	0.99	-	1	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8356967	8356986	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8356987	8357077	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8357078	8357122	1	-	1	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8357078	8357122	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8357123	8357341	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8357342	8357420	1	-	2	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8357342	8357420	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8357421	8357613	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8357614	8357860	0.63	-	0	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8357614	8357860	.	-	.	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	start_codon	8357858	8357860	.	-	0	transcript_id "Ledus.S4G114700.t1"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	transcript	8354856	8357639	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	stop_codon	8354853	8354855	.	-	0	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8354856	8354914	1	-	2	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8354856	8354914	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8354915	8354992	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8354993	8355172	1	-	2	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8354993	8355172	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8355173	8355244	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8355245	8355335	1	-	0	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8355245	8355335	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8355336	8355419	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8355420	8355468	0.75	-	1	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8355420	8355468	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8355469	8355585	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8355586	8355750	1	-	1	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8355586	8355750	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8355751	8355878	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8355879	8355925	1	-	0	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8355879	8355925	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8355926	8356079	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8356080	8356232	0.99	-	0	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8356080	8356232	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8356233	8356311	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8356312	8356377	1	-	0	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8356312	8356377	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8356378	8356554	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8356555	8356625	0.57	-	2	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8356555	8356625	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8356626	8356768	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8356769	8356873	0.97	-	2	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8356769	8356873	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8356874	8356966	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8356967	8356986	0.57	-	1	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8356967	8356986	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8356987	8357077	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8357078	8357122	0.57	-	1	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8357078	8357122	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8357123	8357351	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8357352	8357420	0.57	-	1	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8357352	8357420	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	intron	8357421	8357613	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	CDS	8357614	8357639	0.57	-	0	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	exon	8357614	8357639	.	-	.	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
Ledus.S4	AUGUSTUS	start_codon	8357637	8357639	.	-	0	transcript_id "Ledus.S4G114700.t2"; gene_id "Ledus.S4G114700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10259.t1 is derived from g11289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13869855	13880864	.	+	.	Ledus.S3G173600
Ledus.S3	AUGUSTUS	transcript	13869855	13880864	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	start_codon	13869855	13869857	.	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13869855	13869999	0.98	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13869855	13869999	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13870000	13870086	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13870087	13870300	1	+	2	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13870087	13870300	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13870301	13870435	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13870436	13870531	1	+	1	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13870436	13870531	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13870532	13870719	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13870720	13870837	1	+	1	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13870720	13870837	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13870838	13870920	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13870921	13871088	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13870921	13871088	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13871089	13871230	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13871231	13871395	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13871231	13871395	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13871396	13871688	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13871689	13871744	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13871689	13871744	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13871745	13871946	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13871947	13872036	1	+	1	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13871947	13872036	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13872037	13872125	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13872126	13872286	1	+	1	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13872126	13872286	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13872287	13872421	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13872422	13872504	1	+	2	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13872422	13872504	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13872505	13872591	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13872592	13872717	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13872592	13872717	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13872718	13872816	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13872817	13872894	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13872817	13872894	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13872895	13873075	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13873076	13873223	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13873076	13873223	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13873224	13873432	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13873433	13873575	0.93	+	2	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13873433	13873575	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13873576	13873687	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13873688	13873813	0.97	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13873688	13873813	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13873814	13873900	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13873901	13874081	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13873901	13874081	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13874082	13874225	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13874226	13874323	1	+	2	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13874226	13874323	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13874324	13874453	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13874454	13874609	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13874454	13874609	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13874610	13874765	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13874766	13874922	0.83	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13874766	13874922	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13874923	13875024	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13875025	13875206	0.68	+	2	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13875025	13875206	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13875207	13875319	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13875320	13875395	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13875320	13875395	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13875396	13875531	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13875532	13875712	1	+	2	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13875532	13875712	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13875713	13875890	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13875891	13875966	1	+	1	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13875891	13875966	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13875967	13876099	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13876100	13876282	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13876100	13876282	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13876283	13876365	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13876366	13876446	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13876366	13876446	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13876447	13876573	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13876574	13876678	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13876574	13876678	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13876679	13876771	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13876772	13876861	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13876772	13876861	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13876862	13876953	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13876954	13877165	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13876954	13877165	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13877166	13877322	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13877323	13877509	1	+	1	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13877323	13877509	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13877510	13877640	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13877641	13877823	0.87	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13877641	13877823	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13877824	13877930	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13877931	13878026	0.99	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13877931	13878026	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13878027	13878124	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13878125	13878192	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13878125	13878192	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13878193	13878291	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13878292	13878601	1	+	1	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13878292	13878601	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13878602	13878695	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13878696	13879526	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13878696	13879526	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13879527	13879615	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13879616	13880007	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13879616	13880007	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13880008	13880098	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13880099	13880318	1	+	1	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13880099	13880318	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13880319	13880386	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13880387	13880551	1	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13880387	13880551	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	intron	13880552	13880636	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	CDS	13880637	13880864	0.8	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	exon	13880637	13880864	.	+	.	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
Ledus.S3	AUGUSTUS	stop_codon	13880865	13880867	.	+	0	transcript_id "Ledus.S3G173600.t1"; gene_id "Ledus.S3G173600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9354.t1 is derived from g10384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6338283	6339764	.	-	.	Ledus.S3G083100
Ledus.S3	AUGUSTUS	transcript	6338283	6339764	.	-	.	transcript_id "Ledus.S3G083100.t1"; gene_id "Ledus.S3G083100"
Ledus.S3	AUGUSTUS	stop_codon	6338280	6338282	.	-	0	transcript_id "Ledus.S3G083100.t1"; gene_id "Ledus.S3G083100"
Ledus.S3	AUGUSTUS	CDS	6338283	6339764	0.65	-	0	transcript_id "Ledus.S3G083100.t1"; gene_id "Ledus.S3G083100"
Ledus.S3	AUGUSTUS	exon	6338283	6339764	.	-	.	transcript_id "Ledus.S3G083100.t1"; gene_id "Ledus.S3G083100"
Ledus.S3	AUGUSTUS	start_codon	6339762	6339764	.	-	0	transcript_id "Ledus.S3G083100.t1"; gene_id "Ledus.S3G083100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4562.t1 is derived from g1999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17733034	17733414	.	+	.	Ledus.S1G198300
Ledus.S1	AUGUSTUS	transcript	17733034	17733414	.	+	.	transcript_id "Ledus.S1G198300.t1"; gene_id "Ledus.S1G198300"
Ledus.S1	AUGUSTUS	start_codon	17733034	17733036	.	+	0	transcript_id "Ledus.S1G198300.t1"; gene_id "Ledus.S1G198300"
Ledus.S1	AUGUSTUS	CDS	17733034	17733414	0.71	+	0	transcript_id "Ledus.S1G198300.t1"; gene_id "Ledus.S1G198300"
Ledus.S1	AUGUSTUS	exon	17733034	17733414	.	+	.	transcript_id "Ledus.S1G198300.t1"; gene_id "Ledus.S1G198300"
Ledus.S1	AUGUSTUS	stop_codon	17733415	17733417	.	+	0	transcript_id "Ledus.S1G198300.t1"; gene_id "Ledus.S1G198300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1541.t1 is derived from g8402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10865320	10865535	.	-	.	Ledus.S2G142300
Ledus.S2	AUGUSTUS	transcript	10865320	10865535	.	-	.	transcript_id "Ledus.S2G142300.t1"; gene_id "Ledus.S2G142300"
Ledus.S2	AUGUSTUS	stop_codon	10865317	10865319	.	-	0	transcript_id "Ledus.S2G142300.t1"; gene_id "Ledus.S2G142300"
Ledus.S2	AUGUSTUS	CDS	10865320	10865535	0.97	-	0	transcript_id "Ledus.S2G142300.t1"; gene_id "Ledus.S2G142300"
Ledus.S2	AUGUSTUS	exon	10865320	10865535	.	-	.	transcript_id "Ledus.S2G142300.t1"; gene_id "Ledus.S2G142300"
Ledus.S2	AUGUSTUS	start_codon	10865533	10865535	.	-	0	transcript_id "Ledus.S2G142300.t1"; gene_id "Ledus.S2G142300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10385.t1 is derived from g11415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14636495	14636824	.	+	.	Ledus.S3G186200
Ledus.S3	AUGUSTUS	transcript	14636495	14636824	.	+	.	transcript_id "Ledus.S3G186200.t1"; gene_id "Ledus.S3G186200"
Ledus.S3	AUGUSTUS	start_codon	14636495	14636497	.	+	0	transcript_id "Ledus.S3G186200.t1"; gene_id "Ledus.S3G186200"
Ledus.S3	AUGUSTUS	CDS	14636495	14636824	0.7	+	0	transcript_id "Ledus.S3G186200.t1"; gene_id "Ledus.S3G186200"
Ledus.S3	AUGUSTUS	exon	14636495	14636824	.	+	.	transcript_id "Ledus.S3G186200.t1"; gene_id "Ledus.S3G186200"
Ledus.S3	AUGUSTUS	stop_codon	14636825	14636827	.	+	0	transcript_id "Ledus.S3G186200.t1"; gene_id "Ledus.S3G186200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8713.t1 is derived from g9743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1556458	1557066	.	+	.	Ledus.S3G019000
Ledus.S3	AUGUSTUS	transcript	1556458	1557066	.	+	.	transcript_id "Ledus.S3G019000.t1"; gene_id "Ledus.S3G019000"
Ledus.S3	AUGUSTUS	start_codon	1556458	1556460	.	+	0	transcript_id "Ledus.S3G019000.t1"; gene_id "Ledus.S3G019000"
Ledus.S3	AUGUSTUS	CDS	1556458	1557066	0.87	+	0	transcript_id "Ledus.S3G019000.t1"; gene_id "Ledus.S3G019000"
Ledus.S3	AUGUSTUS	exon	1556458	1557066	.	+	.	transcript_id "Ledus.S3G019000.t1"; gene_id "Ledus.S3G019000"
Ledus.S3	AUGUSTUS	stop_codon	1557067	1557069	.	+	0	transcript_id "Ledus.S3G019000.t1"; gene_id "Ledus.S3G019000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12329.t1 is derived from g5950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11226621	11229502	.	-	.	Ledus.S4G148500
Ledus.S4	AUGUSTUS	transcript	11226621	11229502	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	stop_codon	11226618	11226620	.	-	0	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11226621	11226725	1	-	0	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11226621	11226725	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	intron	11226726	11226809	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11226810	11226870	1	-	1	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11226810	11226870	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	intron	11226871	11226958	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11226959	11227474	1	-	1	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11226959	11227474	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	intron	11227475	11227588	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11227589	11227659	1	-	0	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11227589	11227659	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	intron	11227660	11227768	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11227769	11227826	0.96	-	1	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11227769	11227826	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	intron	11227827	11227994	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11227995	11228074	0.57	-	0	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11227995	11228074	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	intron	11228075	11228160	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11228161	11228399	1	-	2	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11228161	11228399	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	intron	11228400	11228484	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11228485	11228557	1	-	0	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11228485	11228557	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	intron	11228558	11228652	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11228653	11228789	1	-	2	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11228653	11228789	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	intron	11228790	11228918	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11228919	11228957	1	-	2	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11228919	11228957	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	intron	11228958	11229051	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11229052	11229142	1	-	0	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11229052	11229142	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	intron	11229143	11229232	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11229233	11229314	1	-	1	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11229233	11229314	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	intron	11229315	11229392	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	CDS	11229393	11229502	0.95	-	0	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	exon	11229393	11229502	.	-	.	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
Ledus.S4	AUGUSTUS	start_codon	11229500	11229502	.	-	0	transcript_id "Ledus.S4G148500.t1"; gene_id "Ledus.S4G148500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10453.t1 is derived from g11483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15246004	15255892	.	-	.	Ledus.S3G193000
Ledus.S3	AUGUSTUS	transcript	15249366	15255892	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	stop_codon	15249363	15249365	.	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15249366	15249419	1	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15249366	15249419	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15249420	15249736	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15249737	15249873	1	-	2	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15249737	15249873	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15249874	15250020	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250021	15250150	1	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250021	15250150	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15250151	15250271	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250272	15250370	1	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250272	15250370	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15250371	15250470	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250471	15250533	1	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250471	15250533	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15250534	15250629	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250630	15250811	1	-	2	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250630	15250811	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15250812	15250932	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250933	15251158	0.92	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250933	15251158	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15251159	15251247	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15251248	15252249	0.92	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15251248	15252249	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15252250	15252420	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15252421	15253140	0.99	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15252421	15253140	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15253141	15253450	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15253451	15253756	1	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15253451	15253756	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15253757	15253841	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15253842	15254192	1	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15253842	15254192	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15254193	15254276	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15254277	15254366	1	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15254277	15254366	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15254367	15254558	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15254559	15254677	0.99	-	2	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15254559	15254677	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15254678	15254885	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15254886	15254894	0.68	-	2	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15254886	15254894	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15254895	15254943	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15254944	15255021	0.99	-	2	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15254944	15255021	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15255022	15255103	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15255104	15255383	1	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15255104	15255383	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15255384	15255470	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15255471	15255661	1	-	2	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15255471	15255661	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15255662	15255765	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15255766	15255892	0.96	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15255766	15255892	.	-	.	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	start_codon	15255890	15255892	.	-	0	transcript_id "Ledus.S3G193000.t1"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	transcript	15246004	15255892	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	stop_codon	15246001	15246003	.	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15246004	15246060	0.87	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15246004	15246060	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15246061	15246145	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15246146	15246505	0.93	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15246146	15246505	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15246506	15246600	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15246601	15247432	0.93	-	1	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15246601	15247432	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15247433	15247526	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15247527	15247672	1	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15247527	15247672	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15247673	15247795	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15247796	15249583	0.88	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15247796	15249583	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15249584	15249736	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15249737	15249873	1	-	2	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15249737	15249873	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15249874	15250020	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250021	15250150	1	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250021	15250150	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15250151	15250271	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250272	15250370	1	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250272	15250370	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15250371	15250470	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250471	15250533	1	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250471	15250533	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15250534	15250629	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250630	15250811	0.98	-	2	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250630	15250811	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15250812	15250932	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250933	15251158	0.95	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250933	15251158	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15251159	15251247	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15251248	15252249	0.93	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15251248	15252249	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15252250	15252420	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15252421	15253140	1	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15252421	15253140	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15253141	15253450	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15253451	15253756	1	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15253451	15253756	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15253757	15253841	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15253842	15254192	1	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15253842	15254192	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15254193	15254276	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15254277	15254366	1	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15254277	15254366	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15254367	15254558	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15254559	15254677	0.99	-	2	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15254559	15254677	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15254678	15254885	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15254886	15254894	0.62	-	2	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15254886	15254894	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15254895	15254943	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15254944	15255021	0.99	-	2	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15254944	15255021	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15255022	15255103	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15255104	15255383	1	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15255104	15255383	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15255384	15255470	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15255471	15255661	1	-	2	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15255471	15255661	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15255662	15255765	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15255766	15255892	0.95	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15255766	15255892	.	-	.	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	start_codon	15255890	15255892	.	-	0	transcript_id "Ledus.S3G193000.t2"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	transcript	15246004	15255892	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	stop_codon	15246001	15246003	.	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15246004	15246060	0.91	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15246004	15246060	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15246061	15246145	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15246146	15246505	0.9	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15246146	15246505	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15246506	15246600	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15246601	15247432	0.91	-	1	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15246601	15247432	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15247433	15247526	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15247527	15247672	1	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15247527	15247672	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15247673	15247795	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15247796	15249583	0.92	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15247796	15249583	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15249584	15249736	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15249737	15249873	1	-	2	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15249737	15249873	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15249874	15250020	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250021	15250150	1	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250021	15250150	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15250151	15250271	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250272	15250370	1	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250272	15250370	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15250371	15250470	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250471	15250533	0.67	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250471	15250533	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15250534	15250653	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250654	15250811	0.82	-	2	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250654	15250811	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15250812	15250932	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15250933	15251158	0.91	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15250933	15251158	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15251159	15251247	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15251248	15252249	0.92	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15251248	15252249	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15252250	15252420	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15252421	15253140	1	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15252421	15253140	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15253141	15253450	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15253451	15253756	0.98	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15253451	15253756	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15253757	15253841	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15253842	15254192	1	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15253842	15254192	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15254193	15254276	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15254277	15254366	1	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15254277	15254366	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15254367	15254558	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15254559	15254677	0.97	-	2	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15254559	15254677	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15254678	15254885	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15254886	15254894	0.65	-	2	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15254886	15254894	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15254895	15254943	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15254944	15255021	0.99	-	2	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15254944	15255021	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15255022	15255103	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15255104	15255383	1	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15255104	15255383	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15255384	15255470	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15255471	15255661	1	-	2	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15255471	15255661	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	intron	15255662	15255765	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	CDS	15255766	15255892	0.95	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	exon	15255766	15255892	.	-	.	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
Ledus.S3	AUGUSTUS	start_codon	15255890	15255892	.	-	0	transcript_id "Ledus.S3G193000.t3"; gene_id "Ledus.S3G193000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1514.t1 is derived from g8375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10655558	10657087	.	+	.	Ledus.S2G139600
Ledus.S2	AUGUSTUS	transcript	10655558	10657087	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	start_codon	10655558	10655560	.	+	0	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	CDS	10655558	10655562	0.65	+	0	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	exon	10655558	10655562	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	intron	10655563	10655742	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	CDS	10655743	10655814	0.65	+	1	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	exon	10655743	10655814	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	intron	10655815	10655893	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	CDS	10655894	10656041	1	+	1	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	exon	10655894	10656041	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	intron	10656042	10656122	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	CDS	10656123	10656179	1	+	0	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	exon	10656123	10656179	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	intron	10656180	10656264	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	CDS	10656265	10656324	1	+	0	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	exon	10656265	10656324	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	intron	10656325	10656412	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	CDS	10656413	10656501	0.93	+	0	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	exon	10656413	10656501	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	intron	10656502	10656636	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	CDS	10656637	10656691	0.54	+	1	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	exon	10656637	10656691	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	intron	10656692	10656877	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	CDS	10656878	10657087	0.68	+	0	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	exon	10656878	10657087	.	+	.	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
Ledus.S2	AUGUSTUS	stop_codon	10657088	10657090	.	+	0	transcript_id "Ledus.S2G139600.t1"; gene_id "Ledus.S2G139600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4619.t1 is derived from g2056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18321561	18321878	.	-	.	Ledus.S1G204000
Ledus.S1	AUGUSTUS	transcript	18321561	18321878	.	-	.	transcript_id "Ledus.S1G204000.t1"; gene_id "Ledus.S1G204000"
Ledus.S1	AUGUSTUS	stop_codon	18321558	18321560	.	-	0	transcript_id "Ledus.S1G204000.t1"; gene_id "Ledus.S1G204000"
Ledus.S1	AUGUSTUS	CDS	18321561	18321658	0.98	-	2	transcript_id "Ledus.S1G204000.t1"; gene_id "Ledus.S1G204000"
Ledus.S1	AUGUSTUS	exon	18321561	18321658	.	-	.	transcript_id "Ledus.S1G204000.t1"; gene_id "Ledus.S1G204000"
Ledus.S1	AUGUSTUS	intron	18321659	18321772	.	-	.	transcript_id "Ledus.S1G204000.t1"; gene_id "Ledus.S1G204000"
Ledus.S1	AUGUSTUS	CDS	18321773	18321878	1	-	0	transcript_id "Ledus.S1G204000.t1"; gene_id "Ledus.S1G204000"
Ledus.S1	AUGUSTUS	exon	18321773	18321878	.	-	.	transcript_id "Ledus.S1G204000.t1"; gene_id "Ledus.S1G204000"
Ledus.S1	AUGUSTUS	start_codon	18321876	18321878	.	-	0	transcript_id "Ledus.S1G204000.t1"; gene_id "Ledus.S1G204000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11278.t1 is derived from g4896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3251742	3252680	.	+	.	Ledus.S4G043400
Ledus.S4	AUGUSTUS	transcript	3251742	3252680	.	+	.	transcript_id "Ledus.S4G043400.t1"; gene_id "Ledus.S4G043400"
Ledus.S4	AUGUSTUS	start_codon	3251742	3251744	.	+	0	transcript_id "Ledus.S4G043400.t1"; gene_id "Ledus.S4G043400"
Ledus.S4	AUGUSTUS	CDS	3251742	3252680	0.32	+	0	transcript_id "Ledus.S4G043400.t1"; gene_id "Ledus.S4G043400"
Ledus.S4	AUGUSTUS	exon	3251742	3252680	.	+	.	transcript_id "Ledus.S4G043400.t1"; gene_id "Ledus.S4G043400"
Ledus.S4	AUGUSTUS	stop_codon	3252681	3252683	.	+	0	transcript_id "Ledus.S4G043400.t1"; gene_id "Ledus.S4G043400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8488.t1 is derived from g13160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12180537	12180755	.	-	.	Ledus.S5G126600
Ledus.S5	AUGUSTUS	transcript	12180537	12180755	.	-	.	transcript_id "Ledus.S5G126600.t1"; gene_id "Ledus.S5G126600"
Ledus.S5	AUGUSTUS	stop_codon	12180534	12180536	.	-	0	transcript_id "Ledus.S5G126600.t1"; gene_id "Ledus.S5G126600"
Ledus.S5	AUGUSTUS	CDS	12180537	12180755	0.47	-	0	transcript_id "Ledus.S5G126600.t1"; gene_id "Ledus.S5G126600"
Ledus.S5	AUGUSTUS	exon	12180537	12180755	.	-	.	transcript_id "Ledus.S5G126600.t1"; gene_id "Ledus.S5G126600"
Ledus.S5	AUGUSTUS	start_codon	12180753	12180755	.	-	0	transcript_id "Ledus.S5G126600.t1"; gene_id "Ledus.S5G126600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6929.t1 is derived from g4373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35551544	35554248	.	+	.	Ledus.S1G435000
Ledus.S1	AUGUSTUS	transcript	35551544	35554248	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	start_codon	35551544	35551546	.	+	0	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	CDS	35551544	35551744	1	+	0	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	exon	35551544	35551744	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	intron	35551745	35552097	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	CDS	35552098	35552261	1	+	0	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	exon	35552098	35552261	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	intron	35552262	35552407	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	CDS	35552408	35552610	1	+	1	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	exon	35552408	35552610	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	intron	35552611	35552720	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	CDS	35552721	35552953	0.87	+	2	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	exon	35552721	35552953	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	intron	35552954	35553071	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	CDS	35553072	35553134	1	+	0	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	exon	35553072	35553134	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	intron	35553135	35553275	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	CDS	35553276	35553332	1	+	0	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	exon	35553276	35553332	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	intron	35553333	35553412	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	CDS	35553413	35553534	1	+	0	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	exon	35553413	35553534	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	intron	35553535	35553734	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	CDS	35553735	35553852	1	+	1	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	exon	35553735	35553852	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	intron	35553853	35553978	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	CDS	35553979	35554248	0.73	+	0	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	exon	35553979	35554248	.	+	.	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
Ledus.S1	AUGUSTUS	stop_codon	35554249	35554251	.	+	0	transcript_id "Ledus.S1G435000.t1"; gene_id "Ledus.S1G435000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6280.t1 is derived from g3723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30104132	30104934	.	+	.	Ledus.S1G370100
Ledus.S1	AUGUSTUS	transcript	30104132	30104934	.	+	.	transcript_id "Ledus.S1G370100.t1"; gene_id "Ledus.S1G370100"
Ledus.S1	AUGUSTUS	start_codon	30104132	30104134	.	+	0	transcript_id "Ledus.S1G370100.t1"; gene_id "Ledus.S1G370100"
Ledus.S1	AUGUSTUS	CDS	30104132	30104597	0.22	+	0	transcript_id "Ledus.S1G370100.t1"; gene_id "Ledus.S1G370100"
Ledus.S1	AUGUSTUS	exon	30104132	30104597	.	+	.	transcript_id "Ledus.S1G370100.t1"; gene_id "Ledus.S1G370100"
Ledus.S1	AUGUSTUS	intron	30104598	30104803	.	+	.	transcript_id "Ledus.S1G370100.t1"; gene_id "Ledus.S1G370100"
Ledus.S1	AUGUSTUS	CDS	30104804	30104934	0.95	+	2	transcript_id "Ledus.S1G370100.t1"; gene_id "Ledus.S1G370100"
Ledus.S1	AUGUSTUS	exon	30104804	30104934	.	+	.	transcript_id "Ledus.S1G370100.t1"; gene_id "Ledus.S1G370100"
Ledus.S1	AUGUSTUS	stop_codon	30104935	30104937	.	+	0	transcript_id "Ledus.S1G370100.t1"; gene_id "Ledus.S1G370100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5891.t1 is derived from g3334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27610899	27612201	.	-	.	Ledus.S1G331200
Ledus.S1	AUGUSTUS	transcript	27610899	27612201	.	-	.	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	stop_codon	27610896	27610898	.	-	0	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	CDS	27610899	27610932	0.58	-	1	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	exon	27610899	27610932	.	-	.	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	intron	27610933	27611314	.	-	.	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	CDS	27611315	27611331	0.75	-	0	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	exon	27611315	27611331	.	-	.	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	intron	27611332	27611521	.	-	.	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	CDS	27611522	27611648	0.71	-	1	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	exon	27611522	27611648	.	-	.	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	intron	27611649	27611731	.	-	.	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	CDS	27611732	27612201	0.93	-	0	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	exon	27611732	27612201	.	-	.	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
Ledus.S1	AUGUSTUS	start_codon	27612199	27612201	.	-	0	transcript_id "Ledus.S1G331200.t1"; gene_id "Ledus.S1G331200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12797.t1 is derived from g6419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14666578	14668284	.	-	.	Ledus.S4G195300
Ledus.S4	AUGUSTUS	transcript	14666578	14668284	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	stop_codon	14666575	14666577	.	-	0	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	CDS	14666578	14666663	0.99	-	2	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	exon	14666578	14666663	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	intron	14666664	14666749	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	CDS	14666750	14666837	1	-	0	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	exon	14666750	14666837	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	intron	14666838	14667054	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	CDS	14667055	14667108	1	-	0	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	exon	14667055	14667108	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	intron	14667109	14667210	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	CDS	14667211	14667321	0.96	-	0	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	exon	14667211	14667321	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	intron	14667322	14667443	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	CDS	14667444	14667599	1	-	0	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	exon	14667444	14667599	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	intron	14667600	14667684	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	CDS	14667685	14667822	0.98	-	0	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	exon	14667685	14667822	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	intron	14667823	14668014	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	CDS	14668015	14668134	0.82	-	0	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	exon	14668015	14668134	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	intron	14668135	14668278	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	CDS	14668279	14668284	0.97	-	0	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	exon	14668279	14668284	.	-	.	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
Ledus.S4	AUGUSTUS	start_codon	14668282	14668284	.	-	0	transcript_id "Ledus.S4G195300.t1"; gene_id "Ledus.S4G195300"
# This transcript jg872.t2 is derived from g7733.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg872.t3 is derived from g7733.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg873.t1 is derived from g7734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5921015	5921599	.	+	.	Ledus.S2G075500
Ledus.S2	AUGUSTUS	transcript	5921015	5921599	.	+	.	transcript_id "Ledus.S2G075500.t1"; gene_id "Ledus.S2G075500"
Ledus.S2	AUGUSTUS	start_codon	5921015	5921017	.	+	0	transcript_id "Ledus.S2G075500.t1"; gene_id "Ledus.S2G075500"
Ledus.S2	AUGUSTUS	CDS	5921015	5921300	0.93	+	0	transcript_id "Ledus.S2G075500.t1"; gene_id "Ledus.S2G075500"
Ledus.S2	AUGUSTUS	exon	5921015	5921300	.	+	.	transcript_id "Ledus.S2G075500.t1"; gene_id "Ledus.S2G075500"
Ledus.S2	AUGUSTUS	intron	5921301	5921441	.	+	.	transcript_id "Ledus.S2G075500.t1"; gene_id "Ledus.S2G075500"
Ledus.S2	AUGUSTUS	CDS	5921442	5921599	0.99	+	2	transcript_id "Ledus.S2G075500.t1"; gene_id "Ledus.S2G075500"
Ledus.S2	AUGUSTUS	exon	5921442	5921599	.	+	.	transcript_id "Ledus.S2G075500.t1"; gene_id "Ledus.S2G075500"
Ledus.S2	AUGUSTUS	stop_codon	5921600	5921602	.	+	0	transcript_id "Ledus.S2G075500.t1"; gene_id "Ledus.S2G075500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9026.t1 is derived from g10056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3917981	3920674	.	-	.	Ledus.S3G050300
Ledus.S3	AUGUSTUS	transcript	3917981	3920674	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	stop_codon	3917978	3917980	.	-	0	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	CDS	3917981	3918035	0.24	-	1	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	exon	3917981	3918035	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	intron	3918036	3918119	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	CDS	3918120	3918238	0.27	-	0	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	exon	3918120	3918238	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	intron	3918239	3918400	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	CDS	3918401	3918500	1	-	1	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	exon	3918401	3918500	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	intron	3918501	3918626	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	CDS	3918627	3918754	1	-	0	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	exon	3918627	3918754	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	intron	3918755	3918854	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	CDS	3918855	3919022	1	-	0	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	exon	3918855	3919022	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	intron	3919023	3919125	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	CDS	3919126	3919241	1	-	2	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	exon	3919126	3919241	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	intron	3919242	3919387	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	CDS	3919388	3919540	0.94	-	2	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	exon	3919388	3919540	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	intron	3919541	3919642	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	CDS	3919643	3919786	0.98	-	2	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	exon	3919643	3919786	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	intron	3919787	3919983	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	CDS	3919984	3920674	0.44	-	0	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	exon	3919984	3920674	.	-	.	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
Ledus.S3	AUGUSTUS	start_codon	3920672	3920674	.	-	0	transcript_id "Ledus.S3G050300.t1"; gene_id "Ledus.S3G050300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5710.t1 is derived from g3149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26118583	26119554	.	-	.	Ledus.S1G313100
Ledus.S1	AUGUSTUS	transcript	26118583	26119554	.	-	.	transcript_id "Ledus.S1G313100.t1"; gene_id "Ledus.S1G313100"
Ledus.S1	AUGUSTUS	stop_codon	26118580	26118582	.	-	0	transcript_id "Ledus.S1G313100.t1"; gene_id "Ledus.S1G313100"
Ledus.S1	AUGUSTUS	CDS	26118583	26119554	0.88	-	0	transcript_id "Ledus.S1G313100.t1"; gene_id "Ledus.S1G313100"
Ledus.S1	AUGUSTUS	exon	26118583	26119554	.	-	.	transcript_id "Ledus.S1G313100.t1"; gene_id "Ledus.S1G313100"
Ledus.S1	AUGUSTUS	start_codon	26119552	26119554	.	-	0	transcript_id "Ledus.S1G313100.t1"; gene_id "Ledus.S1G313100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5307.t1 is derived from g2746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23232645	23232869	.	+	.	Ledus.S1G272800
Ledus.S1	AUGUSTUS	transcript	23232645	23232869	.	+	.	transcript_id "Ledus.S1G272800.t1"; gene_id "Ledus.S1G272800"
Ledus.S1	AUGUSTUS	start_codon	23232645	23232647	.	+	0	transcript_id "Ledus.S1G272800.t1"; gene_id "Ledus.S1G272800"
Ledus.S1	AUGUSTUS	CDS	23232645	23232869	0.74	+	0	transcript_id "Ledus.S1G272800.t1"; gene_id "Ledus.S1G272800"
Ledus.S1	AUGUSTUS	exon	23232645	23232869	.	+	.	transcript_id "Ledus.S1G272800.t1"; gene_id "Ledus.S1G272800"
Ledus.S1	AUGUSTUS	stop_codon	23232870	23232872	.	+	0	transcript_id "Ledus.S1G272800.t1"; gene_id "Ledus.S1G272800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6217.t1 is derived from g3660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29719034	29719568	.	-	.	Ledus.S1G363800
Ledus.S1	AUGUSTUS	transcript	29719034	29719568	.	-	.	transcript_id "Ledus.S1G363800.t1"; gene_id "Ledus.S1G363800"
Ledus.S1	AUGUSTUS	stop_codon	29719031	29719033	.	-	0	transcript_id "Ledus.S1G363800.t1"; gene_id "Ledus.S1G363800"
Ledus.S1	AUGUSTUS	CDS	29719034	29719213	0.94	-	0	transcript_id "Ledus.S1G363800.t1"; gene_id "Ledus.S1G363800"
Ledus.S1	AUGUSTUS	exon	29719034	29719213	.	-	.	transcript_id "Ledus.S1G363800.t1"; gene_id "Ledus.S1G363800"
Ledus.S1	AUGUSTUS	intron	29719214	29719316	.	-	.	transcript_id "Ledus.S1G363800.t1"; gene_id "Ledus.S1G363800"
Ledus.S1	AUGUSTUS	CDS	29719317	29719568	0.99	-	0	transcript_id "Ledus.S1G363800.t1"; gene_id "Ledus.S1G363800"
Ledus.S1	AUGUSTUS	exon	29719317	29719568	.	-	.	transcript_id "Ledus.S1G363800.t1"; gene_id "Ledus.S1G363800"
Ledus.S1	AUGUSTUS	start_codon	29719566	29719568	.	-	0	transcript_id "Ledus.S1G363800.t1"; gene_id "Ledus.S1G363800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8657.t1 is derived from g9687.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1169499	1171424	.	+	.	Ledus.S3G013400
Ledus.S3	AUGUSTUS	transcript	1169499	1171424	.	+	.	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	start_codon	1169499	1169501	.	+	0	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	CDS	1169499	1169509	0.91	+	0	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	exon	1169499	1169509	.	+	.	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	intron	1169510	1169581	.	+	.	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	CDS	1169582	1169593	1	+	1	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	exon	1169582	1169593	.	+	.	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	intron	1169594	1170104	.	+	.	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	CDS	1170105	1170279	1	+	1	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	exon	1170105	1170279	.	+	.	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	intron	1170280	1170570	.	+	.	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	CDS	1170571	1170665	1	+	0	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	exon	1170571	1170665	.	+	.	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	intron	1170666	1171161	.	+	.	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	CDS	1171162	1171238	1	+	1	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	exon	1171162	1171238	.	+	.	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	intron	1171239	1171356	.	+	.	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	CDS	1171357	1171424	0.98	+	2	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	exon	1171357	1171424	.	+	.	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
Ledus.S3	AUGUSTUS	stop_codon	1171425	1171427	.	+	0	transcript_id "Ledus.S3G013400.t1"; gene_id "Ledus.S3G013400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4297.t1 is derived from g1733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16103708	16104820	.	-	.	Ledus.S1G171800
Ledus.S1	AUGUSTUS	transcript	16103708	16104820	.	-	.	transcript_id "Ledus.S1G171800.t1"; gene_id "Ledus.S1G171800"
Ledus.S1	AUGUSTUS	stop_codon	16103705	16103707	.	-	0	transcript_id "Ledus.S1G171800.t1"; gene_id "Ledus.S1G171800"
Ledus.S1	AUGUSTUS	CDS	16103708	16104820	0.99	-	0	transcript_id "Ledus.S1G171800.t1"; gene_id "Ledus.S1G171800"
Ledus.S1	AUGUSTUS	exon	16103708	16104820	.	-	.	transcript_id "Ledus.S1G171800.t1"; gene_id "Ledus.S1G171800"
Ledus.S1	AUGUSTUS	start_codon	16104818	16104820	.	-	0	transcript_id "Ledus.S1G171800.t1"; gene_id "Ledus.S1G171800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1311.t1 is derived from g8172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9215265	9216047	.	-	.	Ledus.S2G119300
Ledus.S2	AUGUSTUS	transcript	9215265	9216047	.	-	.	transcript_id "Ledus.S2G119300.t1"; gene_id "Ledus.S2G119300"
Ledus.S2	AUGUSTUS	stop_codon	9215262	9215264	.	-	0	transcript_id "Ledus.S2G119300.t1"; gene_id "Ledus.S2G119300"
Ledus.S2	AUGUSTUS	CDS	9215265	9216047	1	-	0	transcript_id "Ledus.S2G119300.t1"; gene_id "Ledus.S2G119300"
Ledus.S2	AUGUSTUS	exon	9215265	9216047	.	-	.	transcript_id "Ledus.S2G119300.t1"; gene_id "Ledus.S2G119300"
Ledus.S2	AUGUSTUS	start_codon	9216045	9216047	.	-	0	transcript_id "Ledus.S2G119300.t1"; gene_id "Ledus.S2G119300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8937.t1 is derived from g9967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3318172	3319521	.	-	.	Ledus.S3G041400
Ledus.S3	AUGUSTUS	transcript	3318172	3319521	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	stop_codon	3318169	3318171	.	-	0	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	CDS	3318172	3318280	1	-	1	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	exon	3318172	3318280	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	intron	3318281	3318365	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	CDS	3318366	3318490	1	-	0	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	exon	3318366	3318490	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	intron	3318491	3318574	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	CDS	3318575	3318690	1	-	2	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	exon	3318575	3318690	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	intron	3318691	3318811	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	CDS	3318812	3318926	1	-	0	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	exon	3318812	3318926	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	intron	3318927	3319052	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	CDS	3319053	3319112	1	-	0	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	exon	3319053	3319112	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	intron	3319113	3319286	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	CDS	3319287	3319356	1	-	1	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	exon	3319287	3319356	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	intron	3319357	3319444	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	CDS	3319445	3319521	0.96	-	0	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	exon	3319445	3319521	.	-	.	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
Ledus.S3	AUGUSTUS	start_codon	3319519	3319521	.	-	0	transcript_id "Ledus.S3G041400.t1"; gene_id "Ledus.S3G041400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2306.t1 is derived from g9169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17112166	17116113	.	-	.	Ledus.S2G218800
Ledus.S2	AUGUSTUS	transcript	17112166	17116113	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	stop_codon	17112163	17112165	.	-	0	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17112166	17112271	0.86	-	1	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17112166	17112271	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17112272	17112400	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17112401	17112582	0.92	-	0	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17112401	17112582	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17112583	17112672	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17112673	17112743	1	-	2	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17112673	17112743	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17112744	17112871	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17112872	17113142	1	-	0	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17112872	17113142	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17113143	17113225	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17113226	17113575	1	-	2	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17113226	17113575	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17113576	17113672	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17113673	17114082	0.94	-	1	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17113673	17114082	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17114083	17114180	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17114181	17114235	1	-	2	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17114181	17114235	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17114236	17114336	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17114337	17114448	1	-	0	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17114337	17114448	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17114449	17114545	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17114546	17114626	1	-	0	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17114546	17114626	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17114627	17114790	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17114791	17114884	1	-	1	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17114791	17114884	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17114885	17115039	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17115040	17115104	1	-	0	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17115040	17115104	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17115105	17115275	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17115276	17115334	1	-	2	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17115276	17115334	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17115335	17115514	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17115515	17115632	1	-	0	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17115515	17115632	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	intron	17115633	17115855	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	CDS	17115856	17116113	0.93	-	0	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	exon	17115856	17116113	.	-	.	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
Ledus.S2	AUGUSTUS	start_codon	17116111	17116113	.	-	0	transcript_id "Ledus.S2G218800.t1"; gene_id "Ledus.S2G218800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 5 different transcripts
# This transcript jg3991.t1 is derived from g1427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13931554	13934518	.	-	.	Ledus.S1G141200
Ledus.S1	AUGUSTUS	transcript	13931554	13934518	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	stop_codon	13931551	13931553	.	-	0	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13931554	13931689	0.87	-	1	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13931554	13931689	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13931690	13931780	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13931781	13931843	1	-	1	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13931781	13931843	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13931844	13931920	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13931921	13931995	1	-	1	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13931921	13931995	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13931996	13932092	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932093	13932169	1	-	0	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932093	13932169	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13932170	13932275	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932276	13932382	0.96	-	2	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932276	13932382	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13932383	13932482	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932483	13932598	1	-	1	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932483	13932598	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13932599	13932728	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932729	13932843	1	-	2	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932729	13932843	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13932844	13932932	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932933	13933020	1	-	0	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932933	13933020	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13933021	13933113	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13933114	13933747	0.93	-	1	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13933114	13933747	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13933748	13933814	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13933815	13933909	1	-	0	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13933815	13933909	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13933910	13934296	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13934297	13934518	0.77	-	0	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13934297	13934518	.	-	.	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	start_codon	13934516	13934518	.	-	0	transcript_id "Ledus.S1G141200.t1"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	transcript	13931595	13933539	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	stop_codon	13931592	13931594	.	-	0	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13931595	13931689	0.93	-	2	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13931595	13931689	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13931690	13931784	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13931785	13931843	0.95	-	1	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13931785	13931843	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13931844	13931920	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13931921	13931995	1	-	1	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13931921	13931995	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13931996	13932092	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932093	13932169	1	-	0	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932093	13932169	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13932170	13932275	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932276	13932382	0.91	-	2	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932276	13932382	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13932383	13932482	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932483	13932598	1	-	1	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932483	13932598	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13932599	13932728	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932729	13932843	1	-	2	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932729	13932843	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13932844	13932932	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932933	13933020	1	-	0	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932933	13933020	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13933021	13933113	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13933114	13933539	0.46	-	0	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13933114	13933539	.	-	.	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	start_codon	13933537	13933539	.	-	0	transcript_id "Ledus.S1G141200.t2"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	transcript	13931554	13933539	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	stop_codon	13931551	13931553	.	-	0	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13931554	13931689	0.88	-	1	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13931554	13931689	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13931690	13931780	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13931781	13931843	1	-	1	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13931781	13931843	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13931844	13931920	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13931921	13931995	1	-	1	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13931921	13931995	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13931996	13932092	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932093	13932169	1	-	0	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932093	13932169	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13932170	13932275	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932276	13932382	0.91	-	2	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932276	13932382	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13932383	13932482	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932483	13932598	1	-	1	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932483	13932598	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13932599	13932728	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932729	13932843	1	-	2	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932729	13932843	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13932844	13932932	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13932933	13933020	1	-	0	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13932933	13933020	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	intron	13933021	13933113	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	CDS	13933114	13933539	0.4	-	0	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	exon	13933114	13933539	.	-	.	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
Ledus.S1	AUGUSTUS	start_codon	13933537	13933539	.	-	0	transcript_id "Ledus.S1G141200.t3"; gene_id "Ledus.S1G141200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9940.t1 is derived from g10970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11366162	11366359	.	-	.	Ledus.S3G141700
Ledus.S3	AUGUSTUS	transcript	11366162	11366359	.	-	.	transcript_id "Ledus.S3G141700.t1"; gene_id "Ledus.S3G141700"
Ledus.S3	AUGUSTUS	stop_codon	11366159	11366161	.	-	0	transcript_id "Ledus.S3G141700.t1"; gene_id "Ledus.S3G141700"
Ledus.S3	AUGUSTUS	CDS	11366162	11366359	0.91	-	0	transcript_id "Ledus.S3G141700.t1"; gene_id "Ledus.S3G141700"
Ledus.S3	AUGUSTUS	exon	11366162	11366359	.	-	.	transcript_id "Ledus.S3G141700.t1"; gene_id "Ledus.S3G141700"
Ledus.S3	AUGUSTUS	start_codon	11366357	11366359	.	-	0	transcript_id "Ledus.S3G141700.t1"; gene_id "Ledus.S3G141700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg160.t1 is derived from g7021.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	405427	406946	.	-	.	Ledus.S2G004200
Ledus.S2	AUGUSTUS	transcript	405427	406946	.	-	.	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	stop_codon	405424	405426	.	-	0	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	CDS	405427	405681	1	-	0	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	exon	405427	405681	.	-	.	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	intron	405682	405838	.	-	.	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	CDS	405839	405934	1	-	0	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	exon	405839	405934	.	-	.	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	intron	405935	406066	.	-	.	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	CDS	406067	406242	1	-	2	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	exon	406067	406242	.	-	.	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	intron	406243	406436	.	-	.	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	CDS	406437	406551	1	-	0	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	exon	406437	406551	.	-	.	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	intron	406552	406646	.	-	.	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	CDS	406647	406946	0.97	-	0	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	exon	406647	406946	.	-	.	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
Ledus.S2	AUGUSTUS	start_codon	406944	406946	.	-	0	transcript_id "Ledus.S2G004200.t1"; gene_id "Ledus.S2G004200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11771.t1 is derived from g5390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6703135	6704228	.	+	.	Ledus.S4G092700
Ledus.S4	AUGUSTUS	transcript	6703135	6704228	.	+	.	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	start_codon	6703135	6703137	.	+	0	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	CDS	6703135	6703163	0.61	+	0	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	exon	6703135	6703163	.	+	.	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	intron	6703164	6703257	.	+	.	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	CDS	6703258	6703301	0.69	+	1	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	exon	6703258	6703301	.	+	.	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	intron	6703302	6703379	.	+	.	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	CDS	6703380	6703418	0.51	+	2	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	exon	6703380	6703418	.	+	.	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	intron	6703419	6703692	.	+	.	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	CDS	6703693	6704228	0.8	+	2	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	exon	6703693	6704228	.	+	.	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
Ledus.S4	AUGUSTUS	stop_codon	6704229	6704231	.	+	0	transcript_id "Ledus.S4G092700.t1"; gene_id "Ledus.S4G092700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9069.t1 is derived from g10099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4347680	4348725	.	-	.	Ledus.S3G054600
Ledus.S3	AUGUSTUS	transcript	4347680	4348725	.	-	.	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	stop_codon	4347677	4347679	.	-	0	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	CDS	4347680	4347763	1	-	0	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	exon	4347680	4347763	.	-	.	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	intron	4347764	4347870	.	-	.	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	CDS	4347871	4347909	1	-	0	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	exon	4347871	4347909	.	-	.	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	intron	4347910	4347997	.	-	.	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	CDS	4347998	4348130	1	-	1	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	exon	4347998	4348130	.	-	.	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	intron	4348131	4348215	.	-	.	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	CDS	4348216	4348303	1	-	2	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	exon	4348216	4348303	.	-	.	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	intron	4348304	4348374	.	-	.	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	CDS	4348375	4348458	1	-	2	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	exon	4348375	4348458	.	-	.	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	intron	4348459	4348532	.	-	.	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	CDS	4348533	4348725	0.9	-	0	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	exon	4348533	4348725	.	-	.	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
Ledus.S3	AUGUSTUS	start_codon	4348723	4348725	.	-	0	transcript_id "Ledus.S3G054600.t1"; gene_id "Ledus.S3G054600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8852.t1 is derived from g9882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2310152	2311577	.	+	.	Ledus.S3G032900
Ledus.S3	AUGUSTUS	transcript	2310152	2311577	.	+	.	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	start_codon	2310152	2310154	.	+	0	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	CDS	2310152	2310193	0.94	+	0	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	exon	2310152	2310193	.	+	.	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	intron	2310194	2310342	.	+	.	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	CDS	2310343	2310368	0.82	+	0	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	exon	2310343	2310368	.	+	.	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	intron	2310369	2310455	.	+	.	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	CDS	2310456	2310525	0.74	+	1	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	exon	2310456	2310525	.	+	.	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	intron	2310526	2310598	.	+	.	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	CDS	2310599	2310905	1	+	0	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	exon	2310599	2310905	.	+	.	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	intron	2310906	2311161	.	+	.	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	CDS	2311162	2311577	1	+	2	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	exon	2311162	2311577	.	+	.	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
Ledus.S3	AUGUSTUS	stop_codon	2311578	2311580	.	+	0	transcript_id "Ledus.S3G032900.t1"; gene_id "Ledus.S3G032900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg325.t1 is derived from g7186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1671580	1676700	.	-	.	Ledus.S2G020700
Ledus.S2	AUGUSTUS	transcript	1671580	1676700	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	stop_codon	1671577	1671579	.	-	0	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1671580	1671642	1	-	0	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1671580	1671642	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1671643	1671735	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1671736	1671819	1	-	0	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1671736	1671819	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1671820	1671953	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1671954	1672067	1	-	0	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1671954	1672067	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1672068	1672167	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1672168	1672287	1	-	0	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1672168	1672287	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1672288	1672417	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1672418	1672478	1	-	1	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1672418	1672478	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1672479	1672575	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1672576	1672788	1	-	1	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1672576	1672788	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1672789	1673074	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1673075	1674366	0.95	-	0	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1673075	1674366	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1674367	1674475	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1674476	1674601	0.99	-	0	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1674476	1674601	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1674602	1674683	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1674684	1674751	1	-	2	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1674684	1674751	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1674752	1674859	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1674860	1674968	0.99	-	0	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1674860	1674968	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1674969	1675069	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1675070	1675154	0.98	-	1	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1675070	1675154	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1675155	1675251	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1675252	1675368	1	-	1	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1675252	1675368	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1675369	1675452	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1675453	1675607	1	-	0	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1675453	1675607	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1675608	1675694	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1675695	1675771	0.6	-	2	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1675695	1675771	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1675772	1675870	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1675871	1675901	0.36	-	0	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1675871	1675901	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1675902	1676286	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1676287	1676530	0.44	-	1	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1676287	1676530	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	intron	1676531	1676611	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	CDS	1676612	1676700	0.78	-	0	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	exon	1676612	1676700	.	-	.	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
Ledus.S2	AUGUSTUS	start_codon	1676698	1676700	.	-	0	transcript_id "Ledus.S2G020700.t1"; gene_id "Ledus.S2G020700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1377.t1 is derived from g8238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9596893	9600421	.	-	.	Ledus.S2G125900
Ledus.S2	AUGUSTUS	transcript	9596893	9600421	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	stop_codon	9596890	9596892	.	-	0	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9596893	9596986	1	-	1	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9596893	9596986	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9596987	9597059	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9597060	9597154	1	-	0	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9597060	9597154	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9597155	9597251	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9597252	9597316	1	-	2	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9597252	9597316	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9597317	9597415	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9597416	9597473	1	-	0	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9597416	9597473	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9597474	9597620	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9597621	9597690	1	-	1	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9597621	9597690	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9597691	9597793	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9597794	9597873	0.98	-	0	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9597794	9597873	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9597874	9598006	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9598007	9598034	1	-	1	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9598007	9598034	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9598035	9598135	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9598136	9598197	1	-	0	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9598136	9598197	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9598198	9598318	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9598319	9598354	0.84	-	0	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9598319	9598354	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9598355	9598463	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9598464	9598600	0.71	-	2	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9598464	9598600	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9598601	9598674	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9598675	9598737	0.86	-	2	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9598675	9598737	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9598738	9598843	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9598844	9598895	0.91	-	0	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9598844	9598895	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9598896	9599076	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9599077	9599155	1	-	1	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9599077	9599155	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9599156	9599283	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9599284	9599325	1	-	1	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9599284	9599325	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9599326	9599509	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9599510	9599594	1	-	2	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9599510	9599594	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9599595	9599666	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9599667	9599778	1	-	0	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9599667	9599778	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9599779	9599863	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9599864	9599948	1	-	1	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9599864	9599948	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9599949	9600004	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9600005	9600119	0.47	-	2	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9600005	9600119	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	intron	9600120	9600225	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	CDS	9600226	9600421	0.28	-	0	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	exon	9600226	9600421	.	-	.	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
Ledus.S2	AUGUSTUS	start_codon	9600419	9600421	.	-	0	transcript_id "Ledus.S2G125900.t1"; gene_id "Ledus.S2G125900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2356.t1 is derived from g9219.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17423032	17424056	.	-	.	Ledus.S2G223800
Ledus.S2	AUGUSTUS	transcript	17423032	17424056	.	-	.	transcript_id "Ledus.S2G223800.t1"; gene_id "Ledus.S2G223800"
Ledus.S2	AUGUSTUS	stop_codon	17423029	17423031	.	-	0	transcript_id "Ledus.S2G223800.t1"; gene_id "Ledus.S2G223800"
Ledus.S2	AUGUSTUS	CDS	17423032	17423567	0.59	-	2	transcript_id "Ledus.S2G223800.t1"; gene_id "Ledus.S2G223800"
Ledus.S2	AUGUSTUS	exon	17423032	17423567	.	-	.	transcript_id "Ledus.S2G223800.t1"; gene_id "Ledus.S2G223800"
Ledus.S2	AUGUSTUS	intron	17423568	17423646	.	-	.	transcript_id "Ledus.S2G223800.t1"; gene_id "Ledus.S2G223800"
Ledus.S2	AUGUSTUS	CDS	17423647	17423902	0.64	-	0	transcript_id "Ledus.S2G223800.t1"; gene_id "Ledus.S2G223800"
Ledus.S2	AUGUSTUS	exon	17423647	17423902	.	-	.	transcript_id "Ledus.S2G223800.t1"; gene_id "Ledus.S2G223800"
Ledus.S2	AUGUSTUS	intron	17423903	17423990	.	-	.	transcript_id "Ledus.S2G223800.t1"; gene_id "Ledus.S2G223800"
Ledus.S2	AUGUSTUS	CDS	17423991	17424056	0.92	-	0	transcript_id "Ledus.S2G223800.t1"; gene_id "Ledus.S2G223800"
Ledus.S2	AUGUSTUS	exon	17423991	17424056	.	-	.	transcript_id "Ledus.S2G223800.t1"; gene_id "Ledus.S2G223800"
Ledus.S2	AUGUSTUS	start_codon	17424054	17424056	.	-	0	transcript_id "Ledus.S2G223800.t1"; gene_id "Ledus.S2G223800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3030.t1 is derived from g465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5390426	5392381	.	-	.	Ledus.S1G045100
Ledus.S1	AUGUSTUS	transcript	5390426	5392381	.	-	.	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	stop_codon	5390423	5390425	.	-	0	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	CDS	5390426	5390891	0.96	-	1	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	exon	5390426	5390891	.	-	.	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	intron	5390892	5391032	.	-	.	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	CDS	5391033	5391241	1	-	0	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	exon	5391033	5391241	.	-	.	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	intron	5391242	5391450	.	-	.	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	CDS	5391451	5391568	1	-	1	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	exon	5391451	5391568	.	-	.	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	intron	5391569	5391673	.	-	.	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	CDS	5391674	5391936	0.99	-	0	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	exon	5391674	5391936	.	-	.	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	intron	5391937	5392039	.	-	.	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	CDS	5392040	5392381	1	-	0	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	exon	5392040	5392381	.	-	.	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
Ledus.S1	AUGUSTUS	start_codon	5392379	5392381	.	-	0	transcript_id "Ledus.S1G045100.t1"; gene_id "Ledus.S1G045100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1439.t1 is derived from g8300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10138203	10138825	.	+	.	Ledus.S2G132100
Ledus.S2	AUGUSTUS	transcript	10138203	10138825	.	+	.	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	start_codon	10138203	10138205	.	+	0	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	CDS	10138203	10138251	0.45	+	0	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	exon	10138203	10138251	.	+	.	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	intron	10138252	10138337	.	+	.	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	CDS	10138338	10138385	0.55	+	2	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	exon	10138338	10138385	.	+	.	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	intron	10138386	10138456	.	+	.	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	CDS	10138457	10138578	0.55	+	2	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	exon	10138457	10138578	.	+	.	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	intron	10138579	10138675	.	+	.	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	CDS	10138676	10138825	0.76	+	0	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	exon	10138676	10138825	.	+	.	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
Ledus.S2	AUGUSTUS	stop_codon	10138826	10138828	.	+	0	transcript_id "Ledus.S2G132100.t1"; gene_id "Ledus.S2G132100"
# This transcript jg9295.t2 is derived from g10325.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9296.t1 is derived from g10326.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5835415	5858909	.	+	.	Ledus.S3G077300
Ledus.S3	AUGUSTUS	transcript	5835415	5858909	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	start_codon	5835415	5835417	.	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5835415	5835429	0.68	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5835415	5835429	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5835430	5835589	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5835590	5835671	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5835590	5835671	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5835672	5835895	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5835896	5835999	1	+	2	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5835896	5835999	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5836000	5836140	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5836141	5836236	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5836141	5836236	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5836237	5836362	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5836363	5836410	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5836363	5836410	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5836411	5836606	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5836607	5836663	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5836607	5836663	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5836664	5836818	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5836819	5836922	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5836819	5836922	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5836923	5837017	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5837018	5837135	1	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5837018	5837135	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5837136	5837252	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5837253	5837354	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5837253	5837354	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5837355	5837430	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5837431	5837631	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5837431	5837631	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5837632	5837769	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5837770	5837930	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5837770	5837930	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5837931	5838028	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5838029	5838187	1	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5838029	5838187	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5838188	5838372	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5838373	5838468	1	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5838373	5838468	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5838469	5838601	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5838602	5838947	1	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5838602	5838947	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5838948	5839214	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5839215	5839328	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5839215	5839328	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5839329	5839463	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5839464	5839559	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5839464	5839559	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5839560	5839647	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5839648	5839715	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5839648	5839715	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5839716	5839967	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5839968	5840088	0.99	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5839968	5840088	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5840089	5840189	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5840190	5840429	0.79	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5840190	5840429	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5840430	5840520	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5840521	5840748	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5840521	5840748	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5840749	5840826	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5840827	5840936	0.79	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5840827	5840936	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5840937	5841048	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5841049	5841145	1	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5841049	5841145	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5841146	5841350	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5841351	5841449	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5841351	5841449	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5841450	5841593	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5841594	5841734	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5841594	5841734	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5841735	5841985	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5841986	5842057	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5841986	5842057	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5842058	5842168	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5842169	5842711	0.86	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5842169	5842711	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5842712	5842893	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5842894	5843223	0.92	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5842894	5843223	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5843224	5843349	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5843350	5843481	0.66	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5843350	5843481	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5843482	5843584	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5843585	5843698	0.96	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5843585	5843698	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5843699	5843903	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5843904	5844030	0.26	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5843904	5844030	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5844031	5844168	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5844169	5844317	0.86	+	2	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5844169	5844317	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5844318	5844456	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5844457	5844600	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5844457	5844600	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5844601	5844890	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5844891	5845187	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5844891	5845187	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5845188	5845360	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5845361	5846011	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5845361	5846011	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5846012	5846390	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5846391	5846591	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5846391	5846591	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5846592	5846896	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5846897	5847000	0.96	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5846897	5847000	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5847001	5847104	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5847105	5847400	1	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5847105	5847400	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5847401	5847498	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5847499	5847583	1	+	2	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5847499	5847583	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5847584	5847784	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5847785	5847918	0.69	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5847785	5847918	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5847919	5847990	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5847991	5848102	0.71	+	2	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5847991	5848102	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5848103	5848176	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5848177	5848578	0.77	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5848177	5848578	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5848579	5848715	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5848716	5848842	0.79	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5848716	5848842	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5848843	5849140	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5849141	5849299	0.99	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5849141	5849299	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5849300	5849395	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5849396	5849559	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5849396	5849559	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5849560	5849837	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5849838	5850018	0.99	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5849838	5850018	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5850019	5850140	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5850141	5850410	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5850141	5850410	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5850411	5850536	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5850537	5850749	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5850537	5850749	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5850750	5850920	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5850921	5850975	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5850921	5850975	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5850976	5851099	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5851100	5851266	0.92	+	2	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5851100	5851266	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5851267	5851399	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5851400	5851918	0.99	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5851400	5851918	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5851919	5852008	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5852009	5852797	0.81	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5852009	5852797	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5852798	5852881	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5852882	5852958	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5852882	5852958	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5852959	5853127	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5853128	5853578	1	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5853128	5853578	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5853579	5853760	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5853761	5853850	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5853761	5853850	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5853851	5853987	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5853988	5854143	0.99	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5853988	5854143	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5854144	5854249	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5854250	5854434	0.98	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5854250	5854434	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5854435	5854554	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5854555	5855088	0.98	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5854555	5855088	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5855089	5855197	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5855198	5855375	1	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5855198	5855375	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5855376	5855493	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5855494	5855636	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5855494	5855636	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5855637	5855979	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5855980	5856106	1	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5855980	5856106	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5856107	5856193	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5856194	5856415	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5856194	5856415	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5856416	5856507	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5856508	5856867	0.99	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5856508	5856867	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5856868	5856957	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5856958	5857116	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5856958	5857116	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5857117	5857314	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5857315	5857629	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5857315	5857629	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5857630	5857794	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5857795	5858115	0.97	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5857795	5858115	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5858116	5858253	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5858254	5858312	1	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5858254	5858312	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5858313	5858407	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5858408	5858516	1	+	1	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5858408	5858516	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	intron	5858517	5858597	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	CDS	5858598	5858909	0.97	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	exon	5858598	5858909	.	+	.	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
Ledus.S3	AUGUSTUS	stop_codon	5858910	5858912	.	+	0	transcript_id "Ledus.S3G077300.t1"; gene_id "Ledus.S3G077300"
# This transcript jg155.t2 is derived from g7016.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg156.t1 is derived from g7017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	388597	391322	.	-	.	Ledus.S2G003800
Ledus.S2	AUGUSTUS	transcript	388597	391322	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	stop_codon	388594	388596	.	-	0	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	388597	388737	0.83	-	0	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	388597	388737	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	intron	388738	388848	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	388849	388959	0.84	-	0	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	388849	388959	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	intron	388960	389045	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	389046	389160	1	-	1	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	389046	389160	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	intron	389161	389245	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	389246	389345	1	-	2	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	389246	389345	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	intron	389346	389450	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	389451	389545	1	-	1	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	389451	389545	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	intron	389546	389671	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	389672	389802	0.97	-	0	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	389672	389802	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	intron	389803	389894	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	389895	389975	0.55	-	0	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	389895	389975	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	intron	389976	390079	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	390080	390184	0.57	-	0	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	390080	390184	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	intron	390185	390284	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	390285	390302	0.8	-	0	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	390285	390302	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	intron	390303	390467	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	390468	390587	0.43	-	0	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	390468	390587	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	intron	390588	390691	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	390692	390845	1	-	1	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	390692	390845	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	intron	390846	390924	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	390925	391075	1	-	2	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	390925	391075	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	intron	391076	391153	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	CDS	391154	391322	0.93	-	0	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	exon	391154	391322	.	-	.	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
Ledus.S2	AUGUSTUS	start_codon	391320	391322	.	-	0	transcript_id "Ledus.S2G003800.t1"; gene_id "Ledus.S2G003800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9034.t1 is derived from g10064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3952601	3954373	.	-	.	Ledus.S3G051100
Ledus.S3	AUGUSTUS	transcript	3952601	3954373	.	-	.	transcript_id "Ledus.S3G051100.t1"; gene_id "Ledus.S3G051100"
Ledus.S3	AUGUSTUS	stop_codon	3952598	3952600	.	-	0	transcript_id "Ledus.S3G051100.t1"; gene_id "Ledus.S3G051100"
Ledus.S3	AUGUSTUS	CDS	3952601	3954373	0.64	-	0	transcript_id "Ledus.S3G051100.t1"; gene_id "Ledus.S3G051100"
Ledus.S3	AUGUSTUS	exon	3952601	3954373	.	-	.	transcript_id "Ledus.S3G051100.t1"; gene_id "Ledus.S3G051100"
Ledus.S3	AUGUSTUS	start_codon	3954371	3954373	.	-	0	transcript_id "Ledus.S3G051100.t1"; gene_id "Ledus.S3G051100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12748.t1 is derived from g6370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14206379	14209292	.	-	.	Ledus.S4G190400
Ledus.S4	AUGUSTUS	transcript	14206379	14209292	.	-	.	transcript_id "Ledus.S4G190400.t1"; gene_id "Ledus.S4G190400"
Ledus.S4	AUGUSTUS	stop_codon	14206376	14206378	.	-	0	transcript_id "Ledus.S4G190400.t1"; gene_id "Ledus.S4G190400"
Ledus.S4	AUGUSTUS	CDS	14206379	14206433	0.97	-	1	transcript_id "Ledus.S4G190400.t1"; gene_id "Ledus.S4G190400"
Ledus.S4	AUGUSTUS	exon	14206379	14206433	.	-	.	transcript_id "Ledus.S4G190400.t1"; gene_id "Ledus.S4G190400"
Ledus.S4	AUGUSTUS	intron	14206434	14206582	.	-	.	transcript_id "Ledus.S4G190400.t1"; gene_id "Ledus.S4G190400"
Ledus.S4	AUGUSTUS	CDS	14206583	14206616	0.36	-	2	transcript_id "Ledus.S4G190400.t1"; gene_id "Ledus.S4G190400"
Ledus.S4	AUGUSTUS	exon	14206583	14206616	.	-	.	transcript_id "Ledus.S4G190400.t1"; gene_id "Ledus.S4G190400"
Ledus.S4	AUGUSTUS	intron	14206617	14206816	.	-	.	transcript_id "Ledus.S4G190400.t1"; gene_id "Ledus.S4G190400"
Ledus.S4	AUGUSTUS	CDS	14206817	14209292	0.46	-	0	transcript_id "Ledus.S4G190400.t1"; gene_id "Ledus.S4G190400"
Ledus.S4	AUGUSTUS	exon	14206817	14209292	.	-	.	transcript_id "Ledus.S4G190400.t1"; gene_id "Ledus.S4G190400"
Ledus.S4	AUGUSTUS	start_codon	14209290	14209292	.	-	0	transcript_id "Ledus.S4G190400.t1"; gene_id "Ledus.S4G190400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7562.t1 is derived from g12233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4066623	4067159	.	+	.	Ledus.S5G034000
Ledus.S5	AUGUSTUS	transcript	4066623	4067159	.	+	.	transcript_id "Ledus.S5G034000.t1"; gene_id "Ledus.S5G034000"
Ledus.S5	AUGUSTUS	start_codon	4066623	4066625	.	+	0	transcript_id "Ledus.S5G034000.t1"; gene_id "Ledus.S5G034000"
Ledus.S5	AUGUSTUS	CDS	4066623	4066645	0.69	+	0	transcript_id "Ledus.S5G034000.t1"; gene_id "Ledus.S5G034000"
Ledus.S5	AUGUSTUS	exon	4066623	4066645	.	+	.	transcript_id "Ledus.S5G034000.t1"; gene_id "Ledus.S5G034000"
Ledus.S5	AUGUSTUS	intron	4066646	4066867	.	+	.	transcript_id "Ledus.S5G034000.t1"; gene_id "Ledus.S5G034000"
Ledus.S5	AUGUSTUS	CDS	4066868	4066926	1	+	1	transcript_id "Ledus.S5G034000.t1"; gene_id "Ledus.S5G034000"
Ledus.S5	AUGUSTUS	exon	4066868	4066926	.	+	.	transcript_id "Ledus.S5G034000.t1"; gene_id "Ledus.S5G034000"
Ledus.S5	AUGUSTUS	intron	4066927	4067022	.	+	.	transcript_id "Ledus.S5G034000.t1"; gene_id "Ledus.S5G034000"
Ledus.S5	AUGUSTUS	CDS	4067023	4067159	0.88	+	2	transcript_id "Ledus.S5G034000.t1"; gene_id "Ledus.S5G034000"
Ledus.S5	AUGUSTUS	exon	4067023	4067159	.	+	.	transcript_id "Ledus.S5G034000.t1"; gene_id "Ledus.S5G034000"
Ledus.S5	AUGUSTUS	stop_codon	4067160	4067162	.	+	0	transcript_id "Ledus.S5G034000.t1"; gene_id "Ledus.S5G034000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4005.t1 is derived from g1441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14041882	14045307	.	-	.	Ledus.S1G142600
Ledus.S1	AUGUSTUS	transcript	14041882	14045307	.	-	.	transcript_id "Ledus.S1G142600.t1"; gene_id "Ledus.S1G142600"
Ledus.S1	AUGUSTUS	stop_codon	14041879	14041881	.	-	0	transcript_id "Ledus.S1G142600.t1"; gene_id "Ledus.S1G142600"
Ledus.S1	AUGUSTUS	CDS	14041882	14042225	0.99	-	2	transcript_id "Ledus.S1G142600.t1"; gene_id "Ledus.S1G142600"
Ledus.S1	AUGUSTUS	exon	14041882	14042225	.	-	.	transcript_id "Ledus.S1G142600.t1"; gene_id "Ledus.S1G142600"
Ledus.S1	AUGUSTUS	intron	14042226	14042324	.	-	.	transcript_id "Ledus.S1G142600.t1"; gene_id "Ledus.S1G142600"
Ledus.S1	AUGUSTUS	CDS	14042325	14045307	0.93	-	0	transcript_id "Ledus.S1G142600.t1"; gene_id "Ledus.S1G142600"
Ledus.S1	AUGUSTUS	exon	14042325	14045307	.	-	.	transcript_id "Ledus.S1G142600.t1"; gene_id "Ledus.S1G142600"
Ledus.S1	AUGUSTUS	start_codon	14045305	14045307	.	-	0	transcript_id "Ledus.S1G142600.t1"; gene_id "Ledus.S1G142600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11576.t1 is derived from g5194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5345668	5362679	.	-	.	Ledus.S4G073200
Ledus.S4	AUGUSTUS	transcript	5345668	5362679	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	stop_codon	5345665	5345667	.	-	0	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5345668	5345862	0.3	-	0	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5345668	5345862	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	intron	5345863	5346095	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5346096	5346278	1	-	0	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5346096	5346278	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	intron	5346279	5346365	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5346366	5347319	0.96	-	0	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5346366	5347319	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	intron	5347320	5347431	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5347432	5347958	0.89	-	2	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5347432	5347958	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	intron	5347959	5348464	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5348465	5348597	1	-	0	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5348465	5348597	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	intron	5348598	5348745	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5348746	5351887	0.91	-	1	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5348746	5351887	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	intron	5351888	5351976	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5351977	5352248	1	-	0	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5351977	5352248	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	intron	5352249	5352451	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5352452	5352687	1	-	2	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5352452	5352687	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	intron	5352688	5352888	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5352889	5353173	0.94	-	2	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5352889	5353173	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	intron	5353174	5353311	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5353312	5354909	0.99	-	1	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5353312	5354909	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	intron	5354910	5355316	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5355317	5361303	0.94	-	0	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5355317	5361303	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	intron	5361304	5361437	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5361438	5362191	0.92	-	1	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5361438	5362191	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	intron	5362192	5362317	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	CDS	5362318	5362679	0.96	-	0	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	exon	5362318	5362679	.	-	.	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
Ledus.S4	AUGUSTUS	start_codon	5362677	5362679	.	-	0	transcript_id "Ledus.S4G073200.t1"; gene_id "Ledus.S4G073200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1548.t1 is derived from g8409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10883333	10885028	.	+	.	Ledus.S2G143000
Ledus.S2	AUGUSTUS	transcript	10883333	10885028	.	+	.	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	start_codon	10883333	10883335	.	+	0	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	CDS	10883333	10883339	0.99	+	0	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	exon	10883333	10883339	.	+	.	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	intron	10883340	10883564	.	+	.	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	CDS	10883565	10883816	1	+	2	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	exon	10883565	10883816	.	+	.	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	intron	10883817	10883887	.	+	.	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	CDS	10883888	10884177	1	+	2	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	exon	10883888	10884177	.	+	.	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	intron	10884178	10884257	.	+	.	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	CDS	10884258	10885028	0.97	+	0	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	exon	10884258	10885028	.	+	.	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
Ledus.S2	AUGUSTUS	stop_codon	10885029	10885031	.	+	0	transcript_id "Ledus.S2G143000.t1"; gene_id "Ledus.S2G143000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10689.t1 is derived from g11719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17100321	17110951	.	+	.	Ledus.S3G216600
Ledus.S3	AUGUSTUS	transcript	17100321	17110951	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	start_codon	17100321	17100323	.	+	0	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17100321	17100482	0.42	+	0	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17100321	17100482	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17100483	17100799	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17100800	17100935	1	+	0	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17100800	17100935	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17100936	17101017	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17101018	17101105	1	+	2	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17101018	17101105	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17101106	17101337	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17101338	17101496	0.99	+	1	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17101338	17101496	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17101497	17101795	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17101796	17101958	0.83	+	1	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17101796	17101958	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17101959	17102077	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17102078	17102262	0.69	+	0	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17102078	17102262	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17102263	17102382	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17102383	17102556	1	+	1	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17102383	17102556	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17102557	17102846	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17102847	17102992	1	+	1	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17102847	17102992	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17102993	17103155	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17103156	17103279	1	+	2	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17103156	17103279	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17103280	17103429	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17103430	17103610	1	+	1	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17103430	17103610	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17103611	17103718	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17103719	17103878	1	+	0	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17103719	17103878	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17103879	17104107	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17104108	17104149	0.79	+	2	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17104108	17104149	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17104150	17104257	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17104258	17104376	0.8	+	2	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17104258	17104376	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17104377	17104454	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17104455	17104568	1	+	0	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17104455	17104568	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17104569	17104674	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17104675	17104812	0.92	+	0	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17104675	17104812	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17104813	17104924	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17104925	17105017	0.99	+	0	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17104925	17105017	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17105018	17105137	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17105138	17107115	0.74	+	0	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17105138	17107115	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17107116	17107194	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17107195	17107308	0.99	+	2	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17107195	17107308	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17107309	17107451	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17107452	17110951	0.87	+	2	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17107452	17110951	.	+	.	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	stop_codon	17110952	17110954	.	+	0	transcript_id "Ledus.S3G216600.t1"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	transcript	17100321	17110951	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	start_codon	17100321	17100323	.	+	0	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17100321	17100482	0.51	+	0	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17100321	17100482	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17100483	17100799	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17100800	17100935	1	+	0	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17100800	17100935	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17100936	17101017	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17101018	17101105	1	+	2	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17101018	17101105	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17101106	17101337	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17101338	17101496	0.99	+	1	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17101338	17101496	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17101497	17101795	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17101796	17101958	0.94	+	1	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17101796	17101958	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17101959	17102077	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17102078	17102171	0.48	+	0	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17102078	17102171	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17102172	17102262	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17102263	17102296	0.61	+	2	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17102263	17102296	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17102297	17102382	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17102383	17102556	0.99	+	1	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17102383	17102556	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17102557	17102846	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17102847	17102992	1	+	1	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17102847	17102992	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17102993	17103155	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17103156	17103279	1	+	2	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17103156	17103279	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17103280	17103429	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17103430	17103610	1	+	1	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17103430	17103610	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17103611	17103718	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17103719	17103878	1	+	0	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17103719	17103878	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17103879	17104107	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17104108	17104149	0.84	+	2	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17104108	17104149	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17104150	17104257	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17104258	17104376	0.84	+	2	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17104258	17104376	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17104377	17104454	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17104455	17104568	1	+	0	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17104455	17104568	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17104569	17104674	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17104675	17104812	0.88	+	0	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17104675	17104812	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17104813	17104924	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17104925	17105017	1	+	0	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17104925	17105017	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17105018	17105137	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17105138	17107115	0.89	+	0	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17105138	17107115	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17107116	17107194	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17107195	17107308	0.96	+	2	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17107195	17107308	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	intron	17107309	17107451	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	CDS	17107452	17110951	0.95	+	2	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	exon	17107452	17110951	.	+	.	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
Ledus.S3	AUGUSTUS	stop_codon	17110952	17110954	.	+	0	transcript_id "Ledus.S3G216600.t2"; gene_id "Ledus.S3G216600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11804.t1 is derived from g5423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6861940	6863540	.	+	.	Ledus.S4G096000
Ledus.S4	AUGUSTUS	transcript	6861940	6863540	.	+	.	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	start_codon	6861940	6861942	.	+	0	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	CDS	6861940	6861997	0.59	+	0	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	exon	6861940	6861997	.	+	.	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	intron	6861998	6862236	.	+	.	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	CDS	6862237	6862366	0.41	+	2	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	exon	6862237	6862366	.	+	.	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	intron	6862367	6862532	.	+	.	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	CDS	6862533	6862727	0.42	+	1	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	exon	6862533	6862727	.	+	.	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	intron	6862728	6862822	.	+	.	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	CDS	6862823	6862982	0.93	+	1	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	exon	6862823	6862982	.	+	.	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	intron	6862983	6863068	.	+	.	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	CDS	6863069	6863347	0.55	+	0	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	exon	6863069	6863347	.	+	.	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	intron	6863348	6863537	.	+	.	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	CDS	6863538	6863540	0.52	+	0	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	exon	6863538	6863540	.	+	.	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
Ledus.S4	AUGUSTUS	stop_codon	6863541	6863543	.	+	0	transcript_id "Ledus.S4G096000.t1"; gene_id "Ledus.S4G096000"
# This transcript jg5614.t2 is derived from g3053.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5615.t1 is derived from g3054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25401003	25402037	.	+	.	Ledus.S1G303600
Ledus.S1	AUGUSTUS	transcript	25401003	25402037	.	+	.	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	start_codon	25401003	25401005	.	+	0	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	CDS	25401003	25401054	0.93	+	0	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	exon	25401003	25401054	.	+	.	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	intron	25401055	25401197	.	+	.	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	CDS	25401198	25401249	1	+	2	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	exon	25401198	25401249	.	+	.	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	intron	25401250	25401409	.	+	.	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	CDS	25401410	25401563	1	+	1	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	exon	25401410	25401563	.	+	.	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	intron	25401564	25401670	.	+	.	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	CDS	25401671	25401727	1	+	0	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	exon	25401671	25401727	.	+	.	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	intron	25401728	25401804	.	+	.	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	CDS	25401805	25401864	1	+	0	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	exon	25401805	25401864	.	+	.	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	intron	25401865	25401950	.	+	.	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	CDS	25401951	25402037	1	+	0	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	exon	25401951	25402037	.	+	.	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
Ledus.S1	AUGUSTUS	stop_codon	25402038	25402040	.	+	0	transcript_id "Ledus.S1G303600.t1"; gene_id "Ledus.S1G303600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6299.t1 is derived from g3742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30274846	30276616	.	+	.	Ledus.S1G372000
Ledus.S1	AUGUSTUS	transcript	30274846	30276616	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	start_codon	30274846	30274848	.	+	0	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	CDS	30274846	30274874	0.69	+	0	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	exon	30274846	30274874	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	intron	30274875	30275173	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	CDS	30275174	30275236	0.97	+	1	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	exon	30275174	30275236	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	intron	30275237	30275323	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	CDS	30275324	30275591	1	+	1	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	exon	30275324	30275591	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	intron	30275592	30275675	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	CDS	30275676	30275900	1	+	0	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	exon	30275676	30275900	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	intron	30275901	30275979	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	CDS	30275980	30276174	1	+	0	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	exon	30275980	30276174	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	intron	30276175	30276252	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	CDS	30276253	30276314	1	+	0	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	exon	30276253	30276314	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	intron	30276315	30276393	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	CDS	30276394	30276616	0.99	+	1	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	exon	30276394	30276616	.	+	.	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
Ledus.S1	AUGUSTUS	stop_codon	30276617	30276619	.	+	0	transcript_id "Ledus.S1G372000.t1"; gene_id "Ledus.S1G372000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11985.t1 is derived from g5604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8302327	8303389	.	+	.	Ledus.S4G114100
Ledus.S4	AUGUSTUS	transcript	8302327	8303389	.	+	.	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	start_codon	8302327	8302329	.	+	0	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	CDS	8302327	8302583	0.4	+	0	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	exon	8302327	8302583	.	+	.	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	intron	8302584	8302676	.	+	.	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	CDS	8302677	8302769	1	+	1	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	exon	8302677	8302769	.	+	.	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	intron	8302770	8302864	.	+	.	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	CDS	8302865	8302970	1	+	1	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	exon	8302865	8302970	.	+	.	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	intron	8302971	8303053	.	+	.	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	CDS	8303054	8303140	0.61	+	0	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	exon	8303054	8303140	.	+	.	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	intron	8303141	8303323	.	+	.	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	CDS	8303324	8303389	0.45	+	0	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	exon	8303324	8303389	.	+	.	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
Ledus.S4	AUGUSTUS	stop_codon	8303390	8303392	.	+	0	transcript_id "Ledus.S4G114100.t1"; gene_id "Ledus.S4G114100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7977.t1 is derived from g12648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8301304	8302134	.	-	.	Ledus.S5G075500
Ledus.S5	AUGUSTUS	transcript	8301304	8302134	.	-	.	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	stop_codon	8301301	8301303	.	-	0	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	CDS	8301304	8301450	0.55	-	0	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	exon	8301304	8301450	.	-	.	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	intron	8301451	8301568	.	-	.	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	CDS	8301569	8301730	1	-	0	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	exon	8301569	8301730	.	-	.	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	intron	8301731	8301818	.	-	.	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	CDS	8301819	8301907	1	-	2	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	exon	8301819	8301907	.	-	.	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	intron	8301908	8301989	.	-	.	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	CDS	8301990	8302134	0.97	-	0	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	exon	8301990	8302134	.	-	.	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
Ledus.S5	AUGUSTUS	start_codon	8302132	8302134	.	-	0	transcript_id "Ledus.S5G075500.t1"; gene_id "Ledus.S5G075500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3474.t1 is derived from g909.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8635634	8637115	.	-	.	Ledus.S1G089500
Ledus.S1	AUGUSTUS	transcript	8635634	8637115	.	-	.	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	stop_codon	8635631	8635633	.	-	0	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	CDS	8635634	8635779	1	-	2	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	exon	8635634	8635779	.	-	.	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	intron	8635780	8635874	.	-	.	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	CDS	8635875	8635947	1	-	0	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	exon	8635875	8635947	.	-	.	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	intron	8635948	8636025	.	-	.	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	CDS	8636026	8636342	1	-	2	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	exon	8636026	8636342	.	-	.	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	intron	8636343	8636445	.	-	.	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	CDS	8636446	8636566	1	-	0	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	exon	8636446	8636566	.	-	.	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	intron	8636567	8636659	.	-	.	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	CDS	8636660	8636787	1	-	2	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	exon	8636660	8636787	.	-	.	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	intron	8636788	8636880	.	-	.	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	CDS	8636881	8637115	0.96	-	0	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	exon	8636881	8637115	.	-	.	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	start_codon	8637113	8637115	.	-	0	transcript_id "Ledus.S1G089500.t1"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	transcript	8635634	8637115	.	-	.	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	stop_codon	8635631	8635633	.	-	0	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	CDS	8635634	8635779	1	-	2	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	exon	8635634	8635779	.	-	.	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	intron	8635780	8635874	.	-	.	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	CDS	8635875	8635947	1	-	0	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	exon	8635875	8635947	.	-	.	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	intron	8635948	8636025	.	-	.	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	CDS	8636026	8636342	1	-	2	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	exon	8636026	8636342	.	-	.	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	intron	8636343	8636445	.	-	.	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	CDS	8636446	8636566	1	-	0	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	exon	8636446	8636566	.	-	.	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	intron	8636567	8636659	.	-	.	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	CDS	8636660	8636802	0.99	-	2	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	exon	8636660	8636802	.	-	.	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	intron	8636803	8636880	.	-	.	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	CDS	8636881	8637115	0.89	-	0	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	exon	8636881	8637115	.	-	.	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
Ledus.S1	AUGUSTUS	start_codon	8637113	8637115	.	-	0	transcript_id "Ledus.S1G089500.t2"; gene_id "Ledus.S1G089500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5997.t1 is derived from g3440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28197191	28199245	.	-	.	Ledus.S1G341800
Ledus.S1	AUGUSTUS	transcript	28197191	28199245	.	-	.	transcript_id "Ledus.S1G341800.t1"; gene_id "Ledus.S1G341800"
Ledus.S1	AUGUSTUS	stop_codon	28197188	28197190	.	-	0	transcript_id "Ledus.S1G341800.t1"; gene_id "Ledus.S1G341800"
Ledus.S1	AUGUSTUS	CDS	28197191	28197858	1	-	2	transcript_id "Ledus.S1G341800.t1"; gene_id "Ledus.S1G341800"
Ledus.S1	AUGUSTUS	exon	28197191	28197858	.	-	.	transcript_id "Ledus.S1G341800.t1"; gene_id "Ledus.S1G341800"
Ledus.S1	AUGUSTUS	intron	28197859	28197953	.	-	.	transcript_id "Ledus.S1G341800.t1"; gene_id "Ledus.S1G341800"
Ledus.S1	AUGUSTUS	CDS	28197954	28198499	1	-	2	transcript_id "Ledus.S1G341800.t1"; gene_id "Ledus.S1G341800"
Ledus.S1	AUGUSTUS	exon	28197954	28198499	.	-	.	transcript_id "Ledus.S1G341800.t1"; gene_id "Ledus.S1G341800"
Ledus.S1	AUGUSTUS	intron	28198500	28198581	.	-	.	transcript_id "Ledus.S1G341800.t1"; gene_id "Ledus.S1G341800"
Ledus.S1	AUGUSTUS	CDS	28198582	28199245	0.54	-	0	transcript_id "Ledus.S1G341800.t1"; gene_id "Ledus.S1G341800"
Ledus.S1	AUGUSTUS	exon	28198582	28199245	.	-	.	transcript_id "Ledus.S1G341800.t1"; gene_id "Ledus.S1G341800"
Ledus.S1	AUGUSTUS	start_codon	28199243	28199245	.	-	0	transcript_id "Ledus.S1G341800.t1"; gene_id "Ledus.S1G341800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10433.t1 is derived from g11463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15091488	15093679	.	+	.	Ledus.S3G191000
Ledus.S3	AUGUSTUS	transcript	15091488	15093679	.	+	.	transcript_id "Ledus.S3G191000.t1"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	start_codon	15091488	15091490	.	+	0	transcript_id "Ledus.S3G191000.t1"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	CDS	15091488	15091626	0.99	+	0	transcript_id "Ledus.S3G191000.t1"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	exon	15091488	15091626	.	+	.	transcript_id "Ledus.S3G191000.t1"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	intron	15091627	15091727	.	+	.	transcript_id "Ledus.S3G191000.t1"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	CDS	15091728	15091857	1	+	2	transcript_id "Ledus.S3G191000.t1"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	exon	15091728	15091857	.	+	.	transcript_id "Ledus.S3G191000.t1"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	intron	15091858	15091962	.	+	.	transcript_id "Ledus.S3G191000.t1"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	CDS	15091963	15093679	1	+	1	transcript_id "Ledus.S3G191000.t1"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	exon	15091963	15093679	.	+	.	transcript_id "Ledus.S3G191000.t1"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	stop_codon	15093680	15093682	.	+	0	transcript_id "Ledus.S3G191000.t1"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	transcript	15091488	15091733	.	+	.	transcript_id "Ledus.S3G191000.t2"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	start_codon	15091488	15091490	.	+	0	transcript_id "Ledus.S3G191000.t2"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	CDS	15091488	15091733	0.89	+	0	transcript_id "Ledus.S3G191000.t2"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	exon	15091488	15091733	.	+	.	transcript_id "Ledus.S3G191000.t2"; gene_id "Ledus.S3G191000"
Ledus.S3	AUGUSTUS	stop_codon	15091734	15091736	.	+	0	transcript_id "Ledus.S3G191000.t2"; gene_id "Ledus.S3G191000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11834.t1 is derived from g5453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7188529	7188972	.	-	.	Ledus.S4G099000
Ledus.S4	AUGUSTUS	transcript	7188529	7188972	.	-	.	transcript_id "Ledus.S4G099000.t1"; gene_id "Ledus.S4G099000"
Ledus.S4	AUGUSTUS	stop_codon	7188526	7188528	.	-	0	transcript_id "Ledus.S4G099000.t1"; gene_id "Ledus.S4G099000"
Ledus.S4	AUGUSTUS	CDS	7188529	7188972	0.35	-	0	transcript_id "Ledus.S4G099000.t1"; gene_id "Ledus.S4G099000"
Ledus.S4	AUGUSTUS	exon	7188529	7188972	.	-	.	transcript_id "Ledus.S4G099000.t1"; gene_id "Ledus.S4G099000"
Ledus.S4	AUGUSTUS	start_codon	7188970	7188972	.	-	0	transcript_id "Ledus.S4G099000.t1"; gene_id "Ledus.S4G099000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2191.t1 is derived from g9054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15873075	15874208	.	-	.	Ledus.S2G207300
Ledus.S2	AUGUSTUS	transcript	15873075	15874208	.	-	.	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	stop_codon	15873072	15873074	.	-	0	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	CDS	15873075	15873233	1	-	0	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	exon	15873075	15873233	.	-	.	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	intron	15873234	15873351	.	-	.	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	CDS	15873352	15873766	0.92	-	1	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	exon	15873352	15873766	.	-	.	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	intron	15873767	15873991	.	-	.	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	CDS	15873992	15874107	0.93	-	0	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	exon	15873992	15874107	.	-	.	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	intron	15874108	15874181	.	-	.	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	CDS	15874182	15874208	0.92	-	0	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	exon	15874182	15874208	.	-	.	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
Ledus.S2	AUGUSTUS	start_codon	15874206	15874208	.	-	0	transcript_id "Ledus.S2G207300.t1"; gene_id "Ledus.S2G207300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8273.t1 is derived from g12944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10341683	10345336	.	+	.	Ledus.S5G105100
Ledus.S5	AUGUSTUS	transcript	10341683	10345336	.	+	.	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	start_codon	10341683	10341685	.	+	0	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	CDS	10341683	10341918	0.76	+	0	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	exon	10341683	10341918	.	+	.	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	intron	10341919	10342015	.	+	.	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	CDS	10342016	10344656	0.76	+	1	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	exon	10342016	10344656	.	+	.	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	intron	10344657	10345052	.	+	.	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	CDS	10345053	10345188	0.87	+	0	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	exon	10345053	10345188	.	+	.	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	intron	10345189	10345328	.	+	.	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	CDS	10345329	10345336	0.95	+	2	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	exon	10345329	10345336	.	+	.	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
Ledus.S5	AUGUSTUS	stop_codon	10345337	10345339	.	+	0	transcript_id "Ledus.S5G105100.t1"; gene_id "Ledus.S5G105100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10103.t1 is derived from g11133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12723726	12724508	.	+	.	Ledus.S3G158000
Ledus.S3	AUGUSTUS	transcript	12723726	12724508	.	+	.	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	start_codon	12723726	12723728	.	+	0	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	CDS	12723726	12723789	0.34	+	0	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	exon	12723726	12723789	.	+	.	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	intron	12723790	12723887	.	+	.	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	CDS	12723888	12723916	0.46	+	2	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	exon	12723888	12723916	.	+	.	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	intron	12723917	12724110	.	+	.	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	CDS	12724111	12724239	0.89	+	0	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	exon	12724111	12724239	.	+	.	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	intron	12724240	12724334	.	+	.	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	CDS	12724335	12724508	1	+	0	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	exon	12724335	12724508	.	+	.	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
Ledus.S3	AUGUSTUS	stop_codon	12724509	12724511	.	+	0	transcript_id "Ledus.S3G158000.t1"; gene_id "Ledus.S3G158000"
# This transcript jg2082.t2 is derived from g8945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2083.t1 is derived from g8946.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14638579	14640026	.	+	.	Ledus.S2G196500
Ledus.S2	AUGUSTUS	transcript	14638579	14640026	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	start_codon	14638579	14638581	.	+	0	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	CDS	14638579	14638668	0.55	+	0	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	exon	14638579	14638668	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	intron	14638669	14638756	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	CDS	14638757	14638829	1	+	0	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	exon	14638757	14638829	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	intron	14638830	14638898	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	CDS	14638899	14638957	1	+	2	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	exon	14638899	14638957	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	intron	14638958	14639047	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	CDS	14639048	14639101	1	+	0	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	exon	14639048	14639101	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	intron	14639102	14639194	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	CDS	14639195	14639258	1	+	0	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	exon	14639195	14639258	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	intron	14639259	14639356	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	CDS	14639357	14639410	1	+	2	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	exon	14639357	14639410	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	intron	14639411	14639495	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	CDS	14639496	14639548	1	+	2	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	exon	14639496	14639548	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	intron	14639549	14639637	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	CDS	14639638	14639727	1	+	0	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	exon	14639638	14639727	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	intron	14639728	14639819	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	CDS	14639820	14639890	1	+	0	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	exon	14639820	14639890	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	intron	14639891	14639977	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	CDS	14639978	14640026	1	+	1	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	exon	14639978	14640026	.	+	.	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
Ledus.S2	AUGUSTUS	stop_codon	14640027	14640029	.	+	0	transcript_id "Ledus.S2G196500.t1"; gene_id "Ledus.S2G196500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10523.t1 is derived from g11553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15881520	15882296	.	-	.	Ledus.S3G200000
Ledus.S3	AUGUSTUS	transcript	15881520	15882296	.	-	.	transcript_id "Ledus.S3G200000.t1"; gene_id "Ledus.S3G200000"
Ledus.S3	AUGUSTUS	stop_codon	15881517	15881519	.	-	0	transcript_id "Ledus.S3G200000.t1"; gene_id "Ledus.S3G200000"
Ledus.S3	AUGUSTUS	CDS	15881520	15882296	0.99	-	0	transcript_id "Ledus.S3G200000.t1"; gene_id "Ledus.S3G200000"
Ledus.S3	AUGUSTUS	exon	15881520	15882296	.	-	.	transcript_id "Ledus.S3G200000.t1"; gene_id "Ledus.S3G200000"
Ledus.S3	AUGUSTUS	start_codon	15882294	15882296	.	-	0	transcript_id "Ledus.S3G200000.t1"; gene_id "Ledus.S3G200000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9198.t1 is derived from g10228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5318826	5320458	.	-	.	Ledus.S3G067500
Ledus.S3	AUGUSTUS	transcript	5318826	5320458	.	-	.	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	stop_codon	5318823	5318825	.	-	0	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	CDS	5318826	5319188	1	-	0	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	exon	5318826	5319188	.	-	.	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	intron	5319189	5319271	.	-	.	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	CDS	5319272	5319681	1	-	2	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	exon	5319272	5319681	.	-	.	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	intron	5319682	5319761	.	-	.	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	CDS	5319762	5320289	0.96	-	2	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	exon	5319762	5320289	.	-	.	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	intron	5320290	5320436	.	-	.	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	CDS	5320437	5320458	0.95	-	0	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	exon	5320437	5320458	.	-	.	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
Ledus.S3	AUGUSTUS	start_codon	5320456	5320458	.	-	0	transcript_id "Ledus.S3G067500.t1"; gene_id "Ledus.S3G067500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3244.t1 is derived from g679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7088170	7090279	.	-	.	Ledus.S1G066500
Ledus.S1	AUGUSTUS	transcript	7088170	7090279	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	stop_codon	7088167	7088169	.	-	0	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	CDS	7088170	7088257	1	-	1	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	exon	7088170	7088257	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	intron	7088258	7088356	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	CDS	7088357	7088478	1	-	0	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	exon	7088357	7088478	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	intron	7088479	7088569	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	CDS	7088570	7088676	1	-	2	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	exon	7088570	7088676	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	intron	7088677	7088751	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	CDS	7088752	7088830	1	-	0	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	exon	7088752	7088830	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	intron	7088831	7088906	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	CDS	7088907	7088993	1	-	0	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	exon	7088907	7088993	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	intron	7088994	7089066	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	CDS	7089067	7089318	1	-	0	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	exon	7089067	7089318	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	intron	7089319	7089397	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	CDS	7089398	7089547	1	-	0	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	exon	7089398	7089547	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	intron	7089548	7089620	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	CDS	7089621	7089948	1	-	1	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	exon	7089621	7089948	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	intron	7089949	7090028	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	CDS	7090029	7090279	0.68	-	0	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	exon	7090029	7090279	.	-	.	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
Ledus.S1	AUGUSTUS	start_codon	7090277	7090279	.	-	0	transcript_id "Ledus.S1G066500.t1"; gene_id "Ledus.S1G066500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9012.t1 is derived from g10042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3869389	3870826	.	+	.	Ledus.S3G048900
Ledus.S3	AUGUSTUS	transcript	3869389	3870826	.	+	.	transcript_id "Ledus.S3G048900.t1"; gene_id "Ledus.S3G048900"
Ledus.S3	AUGUSTUS	start_codon	3869389	3869391	.	+	0	transcript_id "Ledus.S3G048900.t1"; gene_id "Ledus.S3G048900"
Ledus.S3	AUGUSTUS	CDS	3869389	3869872	0.98	+	0	transcript_id "Ledus.S3G048900.t1"; gene_id "Ledus.S3G048900"
Ledus.S3	AUGUSTUS	exon	3869389	3869872	.	+	.	transcript_id "Ledus.S3G048900.t1"; gene_id "Ledus.S3G048900"
Ledus.S3	AUGUSTUS	intron	3869873	3869988	.	+	.	transcript_id "Ledus.S3G048900.t1"; gene_id "Ledus.S3G048900"
Ledus.S3	AUGUSTUS	CDS	3869989	3870582	0.53	+	2	transcript_id "Ledus.S3G048900.t1"; gene_id "Ledus.S3G048900"
Ledus.S3	AUGUSTUS	exon	3869989	3870582	.	+	.	transcript_id "Ledus.S3G048900.t1"; gene_id "Ledus.S3G048900"
Ledus.S3	AUGUSTUS	intron	3870583	3870737	.	+	.	transcript_id "Ledus.S3G048900.t1"; gene_id "Ledus.S3G048900"
Ledus.S3	AUGUSTUS	CDS	3870738	3870826	0.88	+	2	transcript_id "Ledus.S3G048900.t1"; gene_id "Ledus.S3G048900"
Ledus.S3	AUGUSTUS	exon	3870738	3870826	.	+	.	transcript_id "Ledus.S3G048900.t1"; gene_id "Ledus.S3G048900"
Ledus.S3	AUGUSTUS	stop_codon	3870827	3870829	.	+	0	transcript_id "Ledus.S3G048900.t1"; gene_id "Ledus.S3G048900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10686.t1 is derived from g11716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17087274	17093757	.	-	.	Ledus.S3G216300
Ledus.S3	AUGUSTUS	transcript	17087274	17093757	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	stop_codon	17087271	17087273	.	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17087274	17087388	0.99	-	1	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17087274	17087388	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17087389	17087480	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17087481	17087553	1	-	2	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17087481	17087553	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17087554	17087640	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17087641	17087728	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17087641	17087728	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17087729	17087826	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17087827	17087961	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17087827	17087961	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17087962	17088038	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17088039	17088099	1	-	1	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17088039	17088099	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17088100	17088176	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17088177	17088284	1	-	1	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17088177	17088284	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17088285	17088365	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17088366	17088506	0.99	-	1	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17088366	17088506	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17088507	17088628	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17088629	17088750	0.98	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17088629	17088750	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17088751	17088847	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17088848	17088937	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17088848	17088937	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17088938	17089026	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17089027	17089236	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17089027	17089236	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17089237	17089345	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17089346	17089429	0.98	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17089346	17089429	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17089430	17089515	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17089516	17089692	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17089516	17089692	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17089693	17089821	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17089822	17090130	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17089822	17090130	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17090131	17090308	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17090309	17090467	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17090309	17090467	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17090468	17090543	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17090544	17090677	1	-	2	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17090544	17090677	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17090678	17090794	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17090795	17090984	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17090795	17090984	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17090985	17091069	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17091070	17091222	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17091070	17091222	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17091223	17091295	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17091296	17091426	1	-	2	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17091296	17091426	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17091427	17091520	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17091521	17091665	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17091521	17091665	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17091666	17091746	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17091747	17091875	0.84	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17091747	17091875	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17091876	17091987	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17091988	17092063	1	-	1	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17091988	17092063	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17092064	17092146	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17092147	17092304	0.99	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17092147	17092304	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17092305	17092417	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17092418	17092496	0.83	-	1	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17092418	17092496	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17092497	17092612	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17092613	17092743	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17092613	17092743	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17092744	17092856	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17092857	17093033	0.99	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17092857	17093033	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17093034	17093199	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17093200	17093301	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17093200	17093301	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17093302	17093394	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17093395	17093484	0.99	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17093395	17093484	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	intron	17093485	17093604	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	CDS	17093605	17093757	1	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	exon	17093605	17093757	.	-	.	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
Ledus.S3	AUGUSTUS	start_codon	17093755	17093757	.	-	0	transcript_id "Ledus.S3G216300.t1"; gene_id "Ledus.S3G216300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7670.t1 is derived from g12341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4989378	4991863	.	+	.	Ledus.S5G044800
Ledus.S5	AUGUSTUS	transcript	4989378	4991863	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	start_codon	4989378	4989380	.	+	0	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	CDS	4989378	4989469	0.56	+	0	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	exon	4989378	4989469	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	intron	4989470	4989588	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	CDS	4989589	4989973	0.9	+	1	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	exon	4989589	4989973	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	intron	4989974	4990048	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	CDS	4990049	4990165	0.86	+	0	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	exon	4990049	4990165	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	intron	4990166	4990297	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	CDS	4990298	4990315	0.68	+	0	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	exon	4990298	4990315	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	intron	4990316	4990427	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	CDS	4990428	4991335	0.7	+	0	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	exon	4990428	4991335	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	intron	4991336	4991420	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	CDS	4991421	4991507	1	+	1	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	exon	4991421	4991507	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	intron	4991508	4991656	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	CDS	4991657	4991703	0.67	+	1	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	exon	4991657	4991703	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	intron	4991704	4991825	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	CDS	4991826	4991863	0.39	+	2	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	exon	4991826	4991863	.	+	.	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
Ledus.S5	AUGUSTUS	stop_codon	4991864	4991866	.	+	0	transcript_id "Ledus.S5G044800.t1"; gene_id "Ledus.S5G044800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1737.t1 is derived from g8599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12244058	12249749	.	+	.	Ledus.S2G161900
Ledus.S2	AUGUSTUS	transcript	12244058	12249749	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	start_codon	12244058	12244060	.	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12244058	12244128	0.99	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12244058	12244128	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12244129	12244214	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12244215	12244344	1	+	1	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12244215	12244344	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12244345	12244616	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12244617	12244775	1	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12244617	12244775	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12244776	12245055	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12245056	12245393	1	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12245056	12245393	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12245394	12245484	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12245485	12245623	1	+	1	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12245485	12245623	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12245624	12245707	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12245708	12245805	1	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12245708	12245805	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12245806	12245885	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12245886	12246042	1	+	1	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12245886	12246042	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12246043	12246141	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12246142	12246211	1	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12246142	12246211	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12246212	12246338	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12246339	12246415	1	+	2	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12246339	12246415	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12246416	12246558	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12246559	12246612	1	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12246559	12246612	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12246613	12246693	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12246694	12246774	1	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12246694	12246774	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12246775	12246860	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12246861	12246972	1	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12246861	12246972	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12246973	12247065	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12247066	12247152	1	+	2	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12247066	12247152	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12247153	12247269	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12247270	12247445	0.91	+	2	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12247270	12247445	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12247446	12247546	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12247547	12247708	0.43	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12247547	12247708	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12247709	12247816	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12247817	12247924	1	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12247817	12247924	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12247925	12248047	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12248048	12248206	1	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12248048	12248206	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12248207	12248306	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12248307	12248390	1	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12248307	12248390	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12248391	12248482	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12248483	12248688	0.99	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12248483	12248688	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12248689	12248788	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12248789	12248890	1	+	1	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12248789	12248890	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12248891	12249022	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12249023	12249132	1	+	1	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12249023	12249132	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12249133	12249237	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12249238	12249389	1	+	2	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12249238	12249389	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	intron	12249390	12249503	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	CDS	12249504	12249749	0.99	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	exon	12249504	12249749	.	+	.	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
Ledus.S2	AUGUSTUS	stop_codon	12249750	12249752	.	+	0	transcript_id "Ledus.S2G161900.t1"; gene_id "Ledus.S2G161900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7813.t1 is derived from g12484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6958593	6964716	.	-	.	Ledus.S5G059100
Ledus.S5	AUGUSTUS	transcript	6958593	6964716	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	stop_codon	6958590	6958592	.	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6958593	6958699	1	-	2	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6958593	6958699	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6958700	6958784	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6958785	6958853	1	-	2	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6958785	6958853	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6958854	6958958	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6958959	6959033	1	-	2	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6958959	6959033	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6959034	6959154	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6959155	6959365	1	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6959155	6959365	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6959366	6959443	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6959444	6959536	1	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6959444	6959536	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6959537	6959616	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6959617	6959689	1	-	1	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6959617	6959689	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6959690	6959934	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6959935	6960059	1	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6959935	6960059	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6960060	6960161	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6960162	6960201	1	-	1	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6960162	6960201	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6960202	6960361	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6960362	6960543	1	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6960362	6960543	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6960544	6960633	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6960634	6960724	0.98	-	1	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6960634	6960724	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6960725	6960833	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6960834	6961003	0.99	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6960834	6961003	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6961004	6961125	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6961126	6961179	1	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6961126	6961179	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6961180	6961340	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6961341	6961551	1	-	1	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6961341	6961551	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6961552	6961682	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6961683	6961807	1	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6961683	6961807	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6961808	6961955	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6961956	6962108	0.99	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6961956	6962108	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6962109	6962221	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6962222	6962373	1	-	2	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6962222	6962373	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6962374	6962478	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6962479	6962609	0.95	-	1	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6962479	6962609	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6962610	6962728	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6962729	6962790	1	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6962729	6962790	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6962791	6962893	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6962894	6962969	0.95	-	1	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6962894	6962969	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6962970	6963067	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6963068	6963135	1	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6963068	6963135	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6963136	6963289	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6963290	6963762	1	-	2	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6963290	6963762	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6963763	6963861	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6963862	6963952	1	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6963862	6963952	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6963953	6964079	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6964080	6964145	1	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6964080	6964145	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6964146	6964440	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6964441	6964520	1	-	2	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6964441	6964520	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	intron	6964521	6964694	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	CDS	6964695	6964716	0.85	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	exon	6964695	6964716	.	-	.	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
Ledus.S5	AUGUSTUS	start_codon	6964714	6964716	.	-	0	transcript_id "Ledus.S5G059100.t1"; gene_id "Ledus.S5G059100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11731.t1 is derived from g5350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6318629	6319962	.	+	.	Ledus.S4G088700
Ledus.S4	AUGUSTUS	transcript	6318629	6319962	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	start_codon	6318629	6318631	.	+	0	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	CDS	6318629	6318697	0.96	+	0	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	exon	6318629	6318697	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	intron	6318698	6318778	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	CDS	6318779	6318856	1	+	0	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	exon	6318779	6318856	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	intron	6318857	6318983	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	CDS	6318984	6319076	0.97	+	0	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	exon	6318984	6319076	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	intron	6319077	6319191	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	CDS	6319192	6319284	1	+	0	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	exon	6319192	6319284	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	intron	6319285	6319387	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	CDS	6319388	6319486	1	+	0	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	exon	6319388	6319486	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	intron	6319487	6319579	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	CDS	6319580	6319636	1	+	0	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	exon	6319580	6319636	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	intron	6319637	6319767	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	CDS	6319768	6319962	1	+	0	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	exon	6319768	6319962	.	+	.	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
Ledus.S4	AUGUSTUS	stop_codon	6319963	6319965	.	+	0	transcript_id "Ledus.S4G088700.t1"; gene_id "Ledus.S4G088700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9476.t1 is derived from g10506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7244848	7246766	.	-	.	Ledus.S3G095300
Ledus.S3	AUGUSTUS	transcript	7244848	7246766	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	stop_codon	7244845	7244847	.	-	0	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	CDS	7244848	7245062	0.46	-	2	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	exon	7244848	7245062	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	intron	7245063	7245246	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	CDS	7245247	7245433	1	-	0	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	exon	7245247	7245433	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	intron	7245434	7245556	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	CDS	7245557	7245673	1	-	0	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	exon	7245557	7245673	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	intron	7245674	7245749	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	CDS	7245750	7245984	1	-	1	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	exon	7245750	7245984	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	intron	7245985	7246055	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	CDS	7246056	7246195	1	-	0	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	exon	7246056	7246195	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	intron	7246196	7246275	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	CDS	7246276	7246393	1	-	1	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	exon	7246276	7246393	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	intron	7246394	7246482	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	CDS	7246483	7246766	0.93	-	0	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	exon	7246483	7246766	.	-	.	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
Ledus.S3	AUGUSTUS	start_codon	7246764	7246766	.	-	0	transcript_id "Ledus.S3G095300.t1"; gene_id "Ledus.S3G095300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11395.t1 is derived from g5013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3993279	3996426	.	-	.	Ledus.S4G055100
Ledus.S4	AUGUSTUS	transcript	3993279	3996426	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	stop_codon	3993276	3993278	.	-	0	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	CDS	3993279	3993303	0.47	-	1	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	exon	3993279	3993303	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	intron	3993304	3993512	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	CDS	3993513	3993639	0.56	-	2	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	exon	3993513	3993639	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	intron	3993640	3993785	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	CDS	3993786	3993873	1	-	0	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	exon	3993786	3993873	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	intron	3993874	3993970	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	CDS	3993971	3994455	1	-	2	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	exon	3993971	3994455	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	intron	3994456	3994546	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	CDS	3994547	3994574	1	-	0	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	exon	3994547	3994574	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	intron	3994575	3994779	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	CDS	3994780	3994868	1	-	2	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	exon	3994780	3994868	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	intron	3994869	3994946	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	CDS	3994947	3995005	1	-	1	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	exon	3994947	3995005	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	intron	3995006	3995087	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	CDS	3995088	3995170	1	-	0	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	exon	3995088	3995170	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	intron	3995171	3995428	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	CDS	3995429	3995497	1	-	0	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	exon	3995429	3995497	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	intron	3995498	3995919	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	CDS	3995920	3996426	1	-	0	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	exon	3995920	3996426	.	-	.	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
Ledus.S4	AUGUSTUS	start_codon	3996424	3996426	.	-	0	transcript_id "Ledus.S4G055100.t1"; gene_id "Ledus.S4G055100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12115.t1 is derived from g5734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9624120	9626473	.	+	.	Ledus.S4G127100
Ledus.S4	AUGUSTUS	transcript	9624120	9626473	.	+	.	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	start_codon	9624120	9624122	.	+	0	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	CDS	9624120	9624578	0.49	+	0	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	exon	9624120	9624578	.	+	.	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	intron	9624579	9624651	.	+	.	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	CDS	9624652	9625436	1	+	0	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	exon	9624652	9625436	.	+	.	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	intron	9625437	9625526	.	+	.	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	CDS	9625527	9625744	0.78	+	1	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	exon	9625527	9625744	.	+	.	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	intron	9625745	9626172	.	+	.	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	CDS	9626173	9626220	0.91	+	2	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	exon	9626173	9626220	.	+	.	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	intron	9626221	9626426	.	+	.	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	CDS	9626427	9626473	0.93	+	2	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	exon	9626427	9626473	.	+	.	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
Ledus.S4	AUGUSTUS	stop_codon	9626474	9626476	.	+	0	transcript_id "Ledus.S4G127100.t1"; gene_id "Ledus.S4G127100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6799.t1 is derived from g4243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34260909	34262339	.	+	.	Ledus.S1G422000
Ledus.S1	AUGUSTUS	transcript	34260909	34262339	.	+	.	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	start_codon	34260909	34260911	.	+	0	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	CDS	34260909	34261149	0.99	+	0	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	exon	34260909	34261149	.	+	.	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	intron	34261150	34261282	.	+	.	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	CDS	34261283	34261653	1	+	2	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	exon	34261283	34261653	.	+	.	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	intron	34261654	34261739	.	+	.	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	CDS	34261740	34262018	1	+	0	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	exon	34261740	34262018	.	+	.	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	intron	34262019	34262116	.	+	.	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	CDS	34262117	34262203	0.94	+	0	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	exon	34262117	34262203	.	+	.	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	intron	34262204	34262315	.	+	.	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	CDS	34262316	34262339	0.51	+	0	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	exon	34262316	34262339	.	+	.	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
Ledus.S1	AUGUSTUS	stop_codon	34262340	34262342	.	+	0	transcript_id "Ledus.S1G422000.t1"; gene_id "Ledus.S1G422000"
# This transcript jg12634.t2 is derived from g6256.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12635.t1 is derived from g6257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13544810	13546117	.	-	.	Ledus.S4G179100
Ledus.S4	AUGUSTUS	transcript	13544810	13546117	.	-	.	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	stop_codon	13544807	13544809	.	-	0	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	CDS	13544810	13544843	0.72	-	1	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	exon	13544810	13544843	.	-	.	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	intron	13544844	13544937	.	-	.	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	CDS	13544938	13545024	0.55	-	1	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	exon	13544938	13545024	.	-	.	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	intron	13545025	13545165	.	-	.	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	CDS	13545166	13545821	0.45	-	0	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	exon	13545166	13545821	.	-	.	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	intron	13545822	13545910	.	-	.	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	CDS	13545911	13546117	0.56	-	0	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	exon	13545911	13546117	.	-	.	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
Ledus.S4	AUGUSTUS	start_codon	13546115	13546117	.	-	0	transcript_id "Ledus.S4G179100.t1"; gene_id "Ledus.S4G179100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2759.t1 is derived from g193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3216588	3216965	.	-	.	Ledus.S1G018000
Ledus.S1	AUGUSTUS	transcript	3216588	3216965	.	-	.	transcript_id "Ledus.S1G018000.t1"; gene_id "Ledus.S1G018000"
Ledus.S1	AUGUSTUS	stop_codon	3216585	3216587	.	-	0	transcript_id "Ledus.S1G018000.t1"; gene_id "Ledus.S1G018000"
Ledus.S1	AUGUSTUS	CDS	3216588	3216965	0.4	-	0	transcript_id "Ledus.S1G018000.t1"; gene_id "Ledus.S1G018000"
Ledus.S1	AUGUSTUS	exon	3216588	3216965	.	-	.	transcript_id "Ledus.S1G018000.t1"; gene_id "Ledus.S1G018000"
Ledus.S1	AUGUSTUS	start_codon	3216963	3216965	.	-	0	transcript_id "Ledus.S1G018000.t1"; gene_id "Ledus.S1G018000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3190.t1 is derived from g625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6674514	6674936	.	-	.	Ledus.S1G061100
Ledus.S1	AUGUSTUS	transcript	6674514	6674936	.	-	.	transcript_id "Ledus.S1G061100.t1"; gene_id "Ledus.S1G061100"
Ledus.S1	AUGUSTUS	stop_codon	6674511	6674513	.	-	0	transcript_id "Ledus.S1G061100.t1"; gene_id "Ledus.S1G061100"
Ledus.S1	AUGUSTUS	CDS	6674514	6674936	0.72	-	0	transcript_id "Ledus.S1G061100.t1"; gene_id "Ledus.S1G061100"
Ledus.S1	AUGUSTUS	exon	6674514	6674936	.	-	.	transcript_id "Ledus.S1G061100.t1"; gene_id "Ledus.S1G061100"
Ledus.S1	AUGUSTUS	start_codon	6674934	6674936	.	-	0	transcript_id "Ledus.S1G061100.t1"; gene_id "Ledus.S1G061100"
# This transcript jg3997.t2 is derived from g1433.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3998.t1 is derived from g1434.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13986086	13986592	.	-	.	Ledus.S1G141900
Ledus.S1	AUGUSTUS	transcript	13986086	13986592	.	-	.	transcript_id "Ledus.S1G141900.t1"; gene_id "Ledus.S1G141900"
Ledus.S1	AUGUSTUS	stop_codon	13986083	13986085	.	-	0	transcript_id "Ledus.S1G141900.t1"; gene_id "Ledus.S1G141900"
Ledus.S1	AUGUSTUS	CDS	13986086	13986189	0.93	-	2	transcript_id "Ledus.S1G141900.t1"; gene_id "Ledus.S1G141900"
Ledus.S1	AUGUSTUS	exon	13986086	13986189	.	-	.	transcript_id "Ledus.S1G141900.t1"; gene_id "Ledus.S1G141900"
Ledus.S1	AUGUSTUS	intron	13986190	13986267	.	-	.	transcript_id "Ledus.S1G141900.t1"; gene_id "Ledus.S1G141900"
Ledus.S1	AUGUSTUS	CDS	13986268	13986592	0.7	-	0	transcript_id "Ledus.S1G141900.t1"; gene_id "Ledus.S1G141900"
Ledus.S1	AUGUSTUS	exon	13986268	13986592	.	-	.	transcript_id "Ledus.S1G141900.t1"; gene_id "Ledus.S1G141900"
Ledus.S1	AUGUSTUS	start_codon	13986590	13986592	.	-	0	transcript_id "Ledus.S1G141900.t1"; gene_id "Ledus.S1G141900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12332.t1 is derived from g5953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11233691	11235366	.	-	.	Ledus.S4G148800
Ledus.S4	AUGUSTUS	transcript	11233691	11235366	.	-	.	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	stop_codon	11233688	11233690	.	-	0	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	CDS	11233691	11234382	0.5	-	2	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	exon	11233691	11234382	.	-	.	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	intron	11234383	11234517	.	-	.	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	CDS	11234518	11234586	0.54	-	2	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	exon	11234518	11234586	.	-	.	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	intron	11234587	11234681	.	-	.	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	CDS	11234682	11234723	1	-	2	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	exon	11234682	11234723	.	-	.	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	intron	11234724	11234809	.	-	.	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	CDS	11234810	11234993	1	-	0	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	exon	11234810	11234993	.	-	.	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	intron	11234994	11235105	.	-	.	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	CDS	11235106	11235178	0.98	-	1	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	exon	11235106	11235178	.	-	.	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	intron	11235179	11235283	.	-	.	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	CDS	11235284	11235366	0.98	-	0	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	exon	11235284	11235366	.	-	.	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
Ledus.S4	AUGUSTUS	start_codon	11235364	11235366	.	-	0	transcript_id "Ledus.S4G148800.t1"; gene_id "Ledus.S4G148800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4656.t1 is derived from g2094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18801520	18802974	.	-	.	Ledus.S1G207700
Ledus.S1	AUGUSTUS	transcript	18801520	18802974	.	-	.	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	stop_codon	18801517	18801519	.	-	0	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	CDS	18801520	18801778	1	-	1	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	exon	18801520	18801778	.	-	.	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	intron	18801779	18801850	.	-	.	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	CDS	18801851	18801942	1	-	0	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	exon	18801851	18801942	.	-	.	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	intron	18801943	18802040	.	-	.	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	CDS	18802041	18802287	1	-	1	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	exon	18802041	18802287	.	-	.	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	intron	18802288	18802380	.	-	.	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	CDS	18802381	18802551	1	-	1	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	exon	18802381	18802551	.	-	.	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	intron	18802552	18802638	.	-	.	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	CDS	18802639	18802777	1	-	2	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	exon	18802639	18802777	.	-	.	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	intron	18802778	18802874	.	-	.	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	CDS	18802875	18802974	0.36	-	0	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	exon	18802875	18802974	.	-	.	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
Ledus.S1	AUGUSTUS	start_codon	18802972	18802974	.	-	0	transcript_id "Ledus.S1G207700.t1"; gene_id "Ledus.S1G207700"
# This transcript jg3922.t2 is derived from g1358.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3923.t1 is derived from g1359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13573282	13575918	.	-	.	Ledus.S1G134400
Ledus.S1	AUGUSTUS	transcript	13573282	13575918	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	stop_codon	13573279	13573281	.	-	0	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	CDS	13573282	13573375	1	-	1	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	exon	13573282	13573375	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	intron	13573376	13573461	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	CDS	13573462	13573586	1	-	0	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	exon	13573462	13573586	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	intron	13573587	13573701	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	CDS	13573702	13573767	1	-	0	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	exon	13573702	13573767	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	intron	13573768	13573890	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	CDS	13573891	13573941	1	-	0	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	exon	13573891	13573941	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	intron	13573942	13574040	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	CDS	13574041	13574112	1	-	0	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	exon	13574041	13574112	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	intron	13574113	13574306	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	CDS	13574307	13574414	1	-	0	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	exon	13574307	13574414	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	intron	13574415	13574587	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	CDS	13574588	13574692	1	-	0	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	exon	13574588	13574692	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	intron	13574693	13574835	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	CDS	13574836	13574892	1	-	0	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	exon	13574836	13574892	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	intron	13574893	13574991	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	CDS	13574992	13575048	1	-	0	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	exon	13574992	13575048	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	intron	13575049	13575146	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	CDS	13575147	13575208	1	-	2	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	exon	13575147	13575208	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	intron	13575209	13575297	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	CDS	13575298	13575552	1	-	2	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	exon	13575298	13575552	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	intron	13575553	13575773	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	CDS	13575774	13575918	0.29	-	0	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	exon	13575774	13575918	.	-	.	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
Ledus.S1	AUGUSTUS	start_codon	13575916	13575918	.	-	0	transcript_id "Ledus.S1G134400.t1"; gene_id "Ledus.S1G134400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11986.t1 is derived from g5605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8304079	8306313	.	-	.	Ledus.S4G114200
Ledus.S4	AUGUSTUS	transcript	8304079	8306313	.	-	.	transcript_id "Ledus.S4G114200.t1"; gene_id "Ledus.S4G114200"
Ledus.S4	AUGUSTUS	stop_codon	8304076	8304078	.	-	0	transcript_id "Ledus.S4G114200.t1"; gene_id "Ledus.S4G114200"
Ledus.S4	AUGUSTUS	CDS	8304079	8304861	0.95	-	0	transcript_id "Ledus.S4G114200.t1"; gene_id "Ledus.S4G114200"
Ledus.S4	AUGUSTUS	exon	8304079	8304861	.	-	.	transcript_id "Ledus.S4G114200.t1"; gene_id "Ledus.S4G114200"
Ledus.S4	AUGUSTUS	intron	8304862	8305040	.	-	.	transcript_id "Ledus.S4G114200.t1"; gene_id "Ledus.S4G114200"
Ledus.S4	AUGUSTUS	CDS	8305041	8305548	0.99	-	1	transcript_id "Ledus.S4G114200.t1"; gene_id "Ledus.S4G114200"
Ledus.S4	AUGUSTUS	exon	8305041	8305548	.	-	.	transcript_id "Ledus.S4G114200.t1"; gene_id "Ledus.S4G114200"
Ledus.S4	AUGUSTUS	intron	8305549	8305675	.	-	.	transcript_id "Ledus.S4G114200.t1"; gene_id "Ledus.S4G114200"
Ledus.S4	AUGUSTUS	CDS	8305676	8306313	0.98	-	0	transcript_id "Ledus.S4G114200.t1"; gene_id "Ledus.S4G114200"
Ledus.S4	AUGUSTUS	exon	8305676	8306313	.	-	.	transcript_id "Ledus.S4G114200.t1"; gene_id "Ledus.S4G114200"
Ledus.S4	AUGUSTUS	start_codon	8306311	8306313	.	-	0	transcript_id "Ledus.S4G114200.t1"; gene_id "Ledus.S4G114200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4730.t1 is derived from g2168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19318783	19320412	.	+	.	Ledus.S1G215100
Ledus.S1	AUGUSTUS	transcript	19318783	19320412	.	+	.	transcript_id "Ledus.S1G215100.t1"; gene_id "Ledus.S1G215100"
Ledus.S1	AUGUSTUS	start_codon	19318783	19318785	.	+	0	transcript_id "Ledus.S1G215100.t1"; gene_id "Ledus.S1G215100"
Ledus.S1	AUGUSTUS	CDS	19318783	19319121	0.51	+	0	transcript_id "Ledus.S1G215100.t1"; gene_id "Ledus.S1G215100"
Ledus.S1	AUGUSTUS	exon	19318783	19319121	.	+	.	transcript_id "Ledus.S1G215100.t1"; gene_id "Ledus.S1G215100"
Ledus.S1	AUGUSTUS	intron	19319122	19319202	.	+	.	transcript_id "Ledus.S1G215100.t1"; gene_id "Ledus.S1G215100"
Ledus.S1	AUGUSTUS	CDS	19319203	19319382	1	+	0	transcript_id "Ledus.S1G215100.t1"; gene_id "Ledus.S1G215100"
Ledus.S1	AUGUSTUS	exon	19319203	19319382	.	+	.	transcript_id "Ledus.S1G215100.t1"; gene_id "Ledus.S1G215100"
Ledus.S1	AUGUSTUS	intron	19319383	19319470	.	+	.	transcript_id "Ledus.S1G215100.t1"; gene_id "Ledus.S1G215100"
Ledus.S1	AUGUSTUS	CDS	19319471	19320412	0.1	+	0	transcript_id "Ledus.S1G215100.t1"; gene_id "Ledus.S1G215100"
Ledus.S1	AUGUSTUS	exon	19319471	19320412	.	+	.	transcript_id "Ledus.S1G215100.t1"; gene_id "Ledus.S1G215100"
Ledus.S1	AUGUSTUS	stop_codon	19320413	19320415	.	+	0	transcript_id "Ledus.S1G215100.t1"; gene_id "Ledus.S1G215100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11208.t1 is derived from g4826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2715374	2716357	.	-	.	Ledus.S4G036400
Ledus.S4	AUGUSTUS	transcript	2715374	2716357	.	-	.	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	stop_codon	2715371	2715373	.	-	0	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	CDS	2715374	2715534	1	-	2	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	exon	2715374	2715534	.	-	.	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	intron	2715535	2715608	.	-	.	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	CDS	2715609	2715693	1	-	0	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	exon	2715609	2715693	.	-	.	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	intron	2715694	2715844	.	-	.	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	CDS	2715845	2716000	1	-	0	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	exon	2715845	2716000	.	-	.	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	intron	2716001	2716084	.	-	.	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	CDS	2716085	2716357	1	-	0	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	exon	2716085	2716357	.	-	.	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
Ledus.S4	AUGUSTUS	start_codon	2716355	2716357	.	-	0	transcript_id "Ledus.S4G036400.t1"; gene_id "Ledus.S4G036400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8748.t1 is derived from g9778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1796221	1796517	.	+	.	Ledus.S3G022500
Ledus.S3	AUGUSTUS	transcript	1796221	1796517	.	+	.	transcript_id "Ledus.S3G022500.t1"; gene_id "Ledus.S3G022500"
Ledus.S3	AUGUSTUS	start_codon	1796221	1796223	.	+	0	transcript_id "Ledus.S3G022500.t1"; gene_id "Ledus.S3G022500"
Ledus.S3	AUGUSTUS	CDS	1796221	1796517	0.88	+	0	transcript_id "Ledus.S3G022500.t1"; gene_id "Ledus.S3G022500"
Ledus.S3	AUGUSTUS	exon	1796221	1796517	.	+	.	transcript_id "Ledus.S3G022500.t1"; gene_id "Ledus.S3G022500"
Ledus.S3	AUGUSTUS	stop_codon	1796518	1796520	.	+	0	transcript_id "Ledus.S3G022500.t1"; gene_id "Ledus.S3G022500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6646.t1 is derived from g4089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32846801	32847540	.	+	.	Ledus.S1G406700
Ledus.S1	AUGUSTUS	transcript	32846801	32847540	.	+	.	transcript_id "Ledus.S1G406700.t1"; gene_id "Ledus.S1G406700"
Ledus.S1	AUGUSTUS	start_codon	32846801	32846803	.	+	0	transcript_id "Ledus.S1G406700.t1"; gene_id "Ledus.S1G406700"
Ledus.S1	AUGUSTUS	CDS	32846801	32847247	0.29	+	0	transcript_id "Ledus.S1G406700.t1"; gene_id "Ledus.S1G406700"
Ledus.S1	AUGUSTUS	exon	32846801	32847247	.	+	.	transcript_id "Ledus.S1G406700.t1"; gene_id "Ledus.S1G406700"
Ledus.S1	AUGUSTUS	intron	32847248	32847384	.	+	.	transcript_id "Ledus.S1G406700.t1"; gene_id "Ledus.S1G406700"
Ledus.S1	AUGUSTUS	CDS	32847385	32847540	0.41	+	0	transcript_id "Ledus.S1G406700.t1"; gene_id "Ledus.S1G406700"
Ledus.S1	AUGUSTUS	exon	32847385	32847540	.	+	.	transcript_id "Ledus.S1G406700.t1"; gene_id "Ledus.S1G406700"
Ledus.S1	AUGUSTUS	stop_codon	32847541	32847543	.	+	0	transcript_id "Ledus.S1G406700.t1"; gene_id "Ledus.S1G406700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7386.t1 is derived from g12057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1993073	1994480	.	+	.	Ledus.S5G016400
Ledus.S5	AUGUSTUS	transcript	1993073	1994480	.	+	.	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	start_codon	1993073	1993075	.	+	0	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	CDS	1993073	1993376	1	+	0	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	exon	1993073	1993376	.	+	.	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	intron	1993377	1993570	.	+	.	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	CDS	1993571	1993765	0.85	+	2	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	exon	1993571	1993765	.	+	.	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	intron	1993766	1993870	.	+	.	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	CDS	1993871	1994064	0.85	+	2	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	exon	1993871	1994064	.	+	.	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	intron	1994065	1994153	.	+	.	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	CDS	1994154	1994480	1	+	0	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	exon	1994154	1994480	.	+	.	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
Ledus.S5	AUGUSTUS	stop_codon	1994481	1994483	.	+	0	transcript_id "Ledus.S5G016400.t1"; gene_id "Ledus.S5G016400"
# This transcript jg5390.t2 is derived from g2829.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5391.t1 is derived from g2830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23972560	23973387	.	-	.	Ledus.S1G281200
Ledus.S1	AUGUSTUS	transcript	23972560	23973387	.	-	.	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	stop_codon	23972557	23972559	.	-	0	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	CDS	23972560	23972595	0.99	-	0	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	exon	23972560	23972595	.	-	.	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	intron	23972596	23972754	.	-	.	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	CDS	23972755	23972826	1	-	0	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	exon	23972755	23972826	.	-	.	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	intron	23972827	23972914	.	-	.	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	CDS	23972915	23973006	1	-	2	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	exon	23972915	23973006	.	-	.	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	intron	23973007	23973101	.	-	.	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	CDS	23973102	23973166	1	-	1	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	exon	23973102	23973166	.	-	.	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	intron	23973167	23973340	.	-	.	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	CDS	23973341	23973387	0.76	-	0	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	exon	23973341	23973387	.	-	.	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
Ledus.S1	AUGUSTUS	start_codon	23973385	23973387	.	-	0	transcript_id "Ledus.S1G281200.t1"; gene_id "Ledus.S1G281200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg881.t1 is derived from g7742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5947589	5948296	.	+	.	Ledus.S2G076300
Ledus.S2	AUGUSTUS	transcript	5947589	5948296	.	+	.	transcript_id "Ledus.S2G076300.t1"; gene_id "Ledus.S2G076300"
Ledus.S2	AUGUSTUS	start_codon	5947589	5947591	.	+	0	transcript_id "Ledus.S2G076300.t1"; gene_id "Ledus.S2G076300"
Ledus.S2	AUGUSTUS	CDS	5947589	5948001	0.63	+	0	transcript_id "Ledus.S2G076300.t1"; gene_id "Ledus.S2G076300"
Ledus.S2	AUGUSTUS	exon	5947589	5948001	.	+	.	transcript_id "Ledus.S2G076300.t1"; gene_id "Ledus.S2G076300"
Ledus.S2	AUGUSTUS	intron	5948002	5948145	.	+	.	transcript_id "Ledus.S2G076300.t1"; gene_id "Ledus.S2G076300"
Ledus.S2	AUGUSTUS	CDS	5948146	5948296	0.77	+	1	transcript_id "Ledus.S2G076300.t1"; gene_id "Ledus.S2G076300"
Ledus.S2	AUGUSTUS	exon	5948146	5948296	.	+	.	transcript_id "Ledus.S2G076300.t1"; gene_id "Ledus.S2G076300"
Ledus.S2	AUGUSTUS	stop_codon	5948297	5948299	.	+	0	transcript_id "Ledus.S2G076300.t1"; gene_id "Ledus.S2G076300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9158.t1 is derived from g10188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4935978	4940282	.	-	.	Ledus.S3G063500
Ledus.S3	AUGUSTUS	transcript	4935978	4940282	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	stop_codon	4935975	4935977	.	-	0	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4935978	4936061	0.92	-	0	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4935978	4936061	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4936062	4936169	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4936170	4936304	0.51	-	0	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4936170	4936304	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4936305	4936388	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4936389	4936442	1	-	0	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4936389	4936442	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4936443	4936615	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4936616	4936696	1	-	0	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4936616	4936696	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4936697	4936848	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4936849	4936944	1	-	0	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4936849	4936944	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4936945	4937046	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4937047	4937222	0.96	-	2	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4937047	4937222	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4937223	4937325	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4937326	4937399	1	-	1	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4937326	4937399	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4937400	4937619	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4937620	4937727	1	-	1	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4937620	4937727	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4937728	4937800	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4937801	4937967	1	-	0	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4937801	4937967	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4937968	4938218	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4938219	4938269	1	-	0	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4938219	4938269	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4938270	4938402	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4938403	4938513	1	-	0	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4938403	4938513	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4938514	4938692	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4938693	4938765	1	-	1	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4938693	4938765	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4938766	4938908	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4938909	4939007	1	-	1	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4938909	4939007	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4939008	4939219	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4939220	4939320	1	-	0	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4939220	4939320	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4939321	4939399	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4939400	4939514	1	-	1	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4939400	4939514	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	intron	4939515	4940082	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	CDS	4940083	4940282	0.69	-	0	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	exon	4940083	4940282	.	-	.	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
Ledus.S3	AUGUSTUS	start_codon	4940280	4940282	.	-	0	transcript_id "Ledus.S3G063500.t1"; gene_id "Ledus.S3G063500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9448.t1 is derived from g10478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7020173	7020781	.	+	.	Ledus.S3G092500
Ledus.S3	AUGUSTUS	transcript	7020173	7020781	.	+	.	transcript_id "Ledus.S3G092500.t1"; gene_id "Ledus.S3G092500"
Ledus.S3	AUGUSTUS	start_codon	7020173	7020175	.	+	0	transcript_id "Ledus.S3G092500.t1"; gene_id "Ledus.S3G092500"
Ledus.S3	AUGUSTUS	CDS	7020173	7020781	0.39	+	0	transcript_id "Ledus.S3G092500.t1"; gene_id "Ledus.S3G092500"
Ledus.S3	AUGUSTUS	exon	7020173	7020781	.	+	.	transcript_id "Ledus.S3G092500.t1"; gene_id "Ledus.S3G092500"
Ledus.S3	AUGUSTUS	stop_codon	7020782	7020784	.	+	0	transcript_id "Ledus.S3G092500.t1"; gene_id "Ledus.S3G092500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4670.t1 is derived from g2108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18916136	18916936	.	-	.	Ledus.S1G209100
Ledus.S1	AUGUSTUS	transcript	18916136	18916936	.	-	.	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	stop_codon	18916133	18916135	.	-	0	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	CDS	18916136	18916213	0.61	-	0	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	exon	18916136	18916213	.	-	.	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	intron	18916214	18916314	.	-	.	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	CDS	18916315	18916473	0.63	-	0	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	exon	18916315	18916473	.	-	.	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	intron	18916474	18916736	.	-	.	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	CDS	18916737	18916812	0.91	-	1	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	exon	18916737	18916812	.	-	.	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	intron	18916813	18916907	.	-	.	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	CDS	18916908	18916936	0.89	-	0	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	exon	18916908	18916936	.	-	.	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
Ledus.S1	AUGUSTUS	start_codon	18916934	18916936	.	-	0	transcript_id "Ledus.S1G209100.t1"; gene_id "Ledus.S1G209100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4264.t1 is derived from g1700.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15815552	15818466	.	-	.	Ledus.S1G168500
Ledus.S1	AUGUSTUS	transcript	15815552	15818466	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	stop_codon	15815549	15815551	.	-	0	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	CDS	15815552	15815704	0.82	-	0	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	exon	15815552	15815704	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	intron	15815705	15815812	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	CDS	15815813	15815936	0.99	-	1	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	exon	15815813	15815936	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	intron	15815937	15816012	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	CDS	15816013	15816179	1	-	0	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	exon	15816013	15816179	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	intron	15816180	15816261	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	CDS	15816262	15816441	1	-	0	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	exon	15816262	15816441	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	intron	15816442	15816528	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	CDS	15816529	15817409	1	-	2	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	exon	15816529	15817409	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	intron	15817410	15817488	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	CDS	15817489	15817604	1	-	1	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	exon	15817489	15817604	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	intron	15817605	15817687	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	CDS	15817688	15817868	0.72	-	2	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	exon	15817688	15817868	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	intron	15817869	15818001	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	CDS	15818002	15818116	0.98	-	0	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	exon	15818002	15818116	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	intron	15818117	15818307	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	CDS	15818308	15818466	0.98	-	0	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	exon	15818308	15818466	.	-	.	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
Ledus.S1	AUGUSTUS	start_codon	15818464	15818466	.	-	0	transcript_id "Ledus.S1G168500.t1"; gene_id "Ledus.S1G168500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg324.t1 is derived from g7185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1669941	1671211	.	+	.	Ledus.S2G020600
Ledus.S2	AUGUSTUS	transcript	1669941	1671211	.	+	.	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	start_codon	1669941	1669943	.	+	0	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	CDS	1669941	1670293	0.37	+	0	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	exon	1669941	1670293	.	+	.	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	intron	1670294	1670389	.	+	.	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	CDS	1670390	1670477	1	+	1	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	exon	1670390	1670477	.	+	.	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	intron	1670478	1670554	.	+	.	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	CDS	1670555	1670682	1	+	0	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	exon	1670555	1670682	.	+	.	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	intron	1670683	1670925	.	+	.	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	CDS	1670926	1671211	0.98	+	1	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	exon	1670926	1671211	.	+	.	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
Ledus.S2	AUGUSTUS	stop_codon	1671212	1671214	.	+	0	transcript_id "Ledus.S2G020600.t1"; gene_id "Ledus.S2G020600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg897.t1 is derived from g7758.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6010850	6017034	.	+	.	Ledus.S2G077900
Ledus.S2	AUGUSTUS	transcript	6010850	6017034	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	start_codon	6010850	6010852	.	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6010850	6011195	0.97	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6010850	6011195	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011196	6011272	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011273	6011348	1	+	2	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011273	6011348	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011349	6011423	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011424	6011499	1	+	1	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011424	6011499	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011500	6011580	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011581	6011645	1	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011581	6011645	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011646	6011739	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011740	6011832	1	+	1	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011740	6011832	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011833	6011928	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011929	6012029	0.96	+	1	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011929	6012029	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012030	6012115	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012116	6012257	1	+	2	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012116	6012257	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012258	6012403	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012404	6012465	0.99	+	1	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012404	6012465	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012466	6012548	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012549	6012634	0.91	+	2	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012549	6012634	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012635	6012713	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012714	6012778	1	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012714	6012778	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012779	6012976	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012977	6013064	1	+	1	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012977	6013064	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013065	6013148	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6013149	6013221	1	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6013149	6013221	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013222	6013414	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6013415	6013507	1	+	2	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6013415	6013507	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013508	6013621	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6013622	6013748	0.84	+	2	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6013622	6013748	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013749	6013854	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6013855	6013948	1	+	1	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6013855	6013948	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013949	6014043	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014044	6014127	0.94	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014044	6014127	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014128	6014230	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014231	6014387	0.87	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014231	6014387	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014388	6014582	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014583	6014695	0.95	+	2	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014583	6014695	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014696	6014784	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014785	6014829	1	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014785	6014829	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014830	6014964	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014965	6014993	1	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014965	6014993	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014994	6015104	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6015105	6015226	1	+	1	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6015105	6015226	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6015227	6015317	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6015318	6015365	1	+	2	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6015318	6015365	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6015366	6015464	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6015465	6015589	0.97	+	2	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6015465	6015589	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6015590	6015775	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6015776	6015951	1	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6015776	6015951	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6015952	6016079	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016080	6016162	0.82	+	1	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016080	6016162	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6016163	6016340	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016341	6016465	0.99	+	2	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016341	6016465	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6016466	6016617	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016618	6016709	0.93	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016618	6016709	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6016710	6016823	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016824	6016893	0.78	+	1	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016824	6016893	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6016894	6016986	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016987	6017034	1	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016987	6017034	.	+	.	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	stop_codon	6017035	6017037	.	+	0	transcript_id "Ledus.S2G077900.t1"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	transcript	6010850	6017034	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	start_codon	6010850	6010852	.	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6010850	6011195	0.97	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6010850	6011195	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011196	6011287	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011288	6011348	1	+	2	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011288	6011348	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011349	6011423	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011424	6011499	1	+	1	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011424	6011499	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011500	6011580	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011581	6011645	1	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011581	6011645	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011646	6011739	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011740	6011832	1	+	1	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011740	6011832	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011833	6011928	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011929	6012029	0.9	+	1	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011929	6012029	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012030	6012115	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012116	6012257	1	+	2	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012116	6012257	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012258	6012403	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012404	6012465	0.99	+	1	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012404	6012465	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012466	6012548	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012549	6012634	0.92	+	2	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012549	6012634	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012635	6012713	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012714	6012778	1	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012714	6012778	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012779	6012976	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012977	6013064	1	+	1	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012977	6013064	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013065	6013148	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6013149	6013221	1	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6013149	6013221	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013222	6013414	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6013415	6013507	0.99	+	2	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6013415	6013507	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013508	6013621	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6013622	6013748	0.84	+	2	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6013622	6013748	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013749	6013854	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6013855	6013948	1	+	1	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6013855	6013948	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013949	6014043	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014044	6014127	0.96	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014044	6014127	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014128	6014230	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014231	6014387	0.84	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014231	6014387	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014388	6014582	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014583	6014695	0.93	+	2	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014583	6014695	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014696	6014784	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014785	6014829	1	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014785	6014829	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014830	6014964	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014965	6014993	1	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014965	6014993	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014994	6015104	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6015105	6015226	1	+	1	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6015105	6015226	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6015227	6015317	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6015318	6015365	1	+	2	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6015318	6015365	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6015366	6015464	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6015465	6015589	0.91	+	2	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6015465	6015589	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6015590	6015775	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6015776	6015951	1	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6015776	6015951	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6015952	6016079	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016080	6016162	0.89	+	1	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016080	6016162	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6016163	6016340	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016341	6016465	0.97	+	2	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016341	6016465	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6016466	6016617	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016618	6016709	0.98	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016618	6016709	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6016710	6016823	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016824	6016893	0.84	+	1	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016824	6016893	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6016894	6016986	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016987	6017034	1	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016987	6017034	.	+	.	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	stop_codon	6017035	6017037	.	+	0	transcript_id "Ledus.S2G077900.t2"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	transcript	6010850	6017034	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	start_codon	6010850	6010852	.	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6010850	6011195	0.97	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6010850	6011195	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011196	6011272	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011273	6011348	1	+	2	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011273	6011348	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011349	6011423	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011424	6011499	1	+	1	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011424	6011499	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011500	6011580	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011581	6011645	1	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011581	6011645	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011646	6011739	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011740	6011832	1	+	1	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011740	6011832	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6011833	6011928	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6011929	6012029	0.95	+	1	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6011929	6012029	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012030	6012115	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012116	6012257	1	+	2	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012116	6012257	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012258	6012403	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012404	6012465	1	+	1	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012404	6012465	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012466	6012548	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012549	6012634	0.93	+	2	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012549	6012634	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012635	6012713	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012714	6012778	1	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012714	6012778	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6012779	6012976	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6012977	6013064	1	+	1	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6012977	6013064	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013065	6013148	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6013149	6013221	1	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6013149	6013221	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013222	6013414	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6013415	6013507	1	+	2	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6013415	6013507	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013508	6013621	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6013622	6013748	0.76	+	2	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6013622	6013748	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013749	6013854	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6013855	6013948	1	+	1	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6013855	6013948	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6013949	6014043	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014044	6014127	0.96	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014044	6014127	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014128	6014230	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014231	6014387	0.82	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014231	6014387	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014388	6014582	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014583	6014695	0.92	+	2	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014583	6014695	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014696	6014784	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014785	6014829	1	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014785	6014829	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014830	6014964	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6014965	6014993	1	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6014965	6014993	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6014994	6015104	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6015105	6015226	1	+	1	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6015105	6015226	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6015227	6015317	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6015318	6015365	1	+	2	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6015318	6015365	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6015366	6015464	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6015465	6015589	0.93	+	2	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6015465	6015589	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6015590	6015775	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6015776	6015951	0.99	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6015776	6015951	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6015952	6016055	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016056	6016099	0.38	+	1	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016056	6016099	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6016100	6016340	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016341	6016465	0.75	+	2	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016341	6016465	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6016466	6016617	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016618	6016709	0.91	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016618	6016709	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6016710	6016823	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016824	6016893	0.8	+	1	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016824	6016893	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	intron	6016894	6016986	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	CDS	6016987	6017034	1	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	exon	6016987	6017034	.	+	.	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
Ledus.S2	AUGUSTUS	stop_codon	6017035	6017037	.	+	0	transcript_id "Ledus.S2G077900.t3"; gene_id "Ledus.S2G077900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5429.t1 is derived from g2868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24122342	24126579	.	-	.	Ledus.S1G285000
Ledus.S1	AUGUSTUS	transcript	24122342	24126579	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	stop_codon	24122339	24122341	.	-	0	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24122342	24122536	1	-	0	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24122342	24122536	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24122537	24122603	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24122604	24122929	1	-	2	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24122604	24122929	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24122930	24123023	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24123024	24123092	1	-	2	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24123024	24123092	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24123093	24123189	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24123190	24123316	1	-	0	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24123190	24123316	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24123317	24123428	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24123429	24123691	1	-	2	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24123429	24123691	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24123692	24123769	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24123770	24124035	1	-	1	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24123770	24124035	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24124036	24124134	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24124135	24124206	1	-	1	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24124135	24124206	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24124207	24124288	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24124289	24124357	1	-	1	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24124289	24124357	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24124358	24124428	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24124429	24124500	1	-	1	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24124429	24124500	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24124501	24124600	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24124601	24124715	1	-	2	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24124601	24124715	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24124716	24124847	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24124848	24125089	1	-	1	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24124848	24125089	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24125090	24125189	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24125190	24125447	1	-	1	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24125190	24125447	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24125448	24125520	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24125521	24125780	1	-	0	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24125521	24125780	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24125781	24125872	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24125873	24126177	1	-	2	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24125873	24126177	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	intron	24126178	24126245	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	CDS	24126246	24126579	0.38	-	0	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	exon	24126246	24126579	.	-	.	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
Ledus.S1	AUGUSTUS	start_codon	24126577	24126579	.	-	0	transcript_id "Ledus.S1G285000.t1"; gene_id "Ledus.S1G285000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2161.t1 is derived from g9024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15416521	15416748	.	+	.	Ledus.S2G204300
Ledus.S2	AUGUSTUS	transcript	15416521	15416748	.	+	.	transcript_id "Ledus.S2G204300.t1"; gene_id "Ledus.S2G204300"
Ledus.S2	AUGUSTUS	start_codon	15416521	15416523	.	+	0	transcript_id "Ledus.S2G204300.t1"; gene_id "Ledus.S2G204300"
Ledus.S2	AUGUSTUS	CDS	15416521	15416748	0.9	+	0	transcript_id "Ledus.S2G204300.t1"; gene_id "Ledus.S2G204300"
Ledus.S2	AUGUSTUS	exon	15416521	15416748	.	+	.	transcript_id "Ledus.S2G204300.t1"; gene_id "Ledus.S2G204300"
Ledus.S2	AUGUSTUS	stop_codon	15416749	15416751	.	+	0	transcript_id "Ledus.S2G204300.t1"; gene_id "Ledus.S2G204300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9031.t1 is derived from g10061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3939331	3941061	.	-	.	Ledus.S3G050800
Ledus.S3	AUGUSTUS	transcript	3939331	3941061	.	-	.	transcript_id "Ledus.S3G050800.t1"; gene_id "Ledus.S3G050800"
Ledus.S3	AUGUSTUS	stop_codon	3939328	3939330	.	-	0	transcript_id "Ledus.S3G050800.t1"; gene_id "Ledus.S3G050800"
Ledus.S3	AUGUSTUS	CDS	3939331	3941061	0.99	-	0	transcript_id "Ledus.S3G050800.t1"; gene_id "Ledus.S3G050800"
Ledus.S3	AUGUSTUS	exon	3939331	3941061	.	-	.	transcript_id "Ledus.S3G050800.t1"; gene_id "Ledus.S3G050800"
Ledus.S3	AUGUSTUS	start_codon	3941059	3941061	.	-	0	transcript_id "Ledus.S3G050800.t1"; gene_id "Ledus.S3G050800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3884.t1 is derived from g1320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13376664	13380870	.	+	.	Ledus.S1G130500
Ledus.S1	AUGUSTUS	transcript	13376664	13380870	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	start_codon	13376664	13376666	.	+	0	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13376664	13376899	0.56	+	0	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13376664	13376899	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13376900	13377671	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13377672	13377774	1	+	1	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13377672	13377774	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13377775	13377972	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13377973	13378059	1	+	0	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13377973	13378059	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13378060	13378183	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13378184	13378268	1	+	0	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13378184	13378268	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13378269	13378475	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13378476	13378657	1	+	2	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13378476	13378657	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13378658	13378817	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13378818	13378888	1	+	0	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13378818	13378888	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13378889	13379337	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13379338	13379427	1	+	1	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13379338	13379427	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13379428	13379518	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13379519	13379633	0.99	+	1	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13379519	13379633	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13379634	13379758	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13379759	13379860	0.99	+	0	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13379759	13379860	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13379861	13379965	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13379966	13380088	0.99	+	0	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13379966	13380088	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13380089	13380229	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13380230	13380298	1	+	0	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13380230	13380298	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13380299	13380383	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13380384	13380452	1	+	0	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13380384	13380452	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13380453	13380601	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13380602	13380655	1	+	0	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13380602	13380655	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	intron	13380656	13380819	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	CDS	13380820	13380870	1	+	0	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	exon	13380820	13380870	.	+	.	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
Ledus.S1	AUGUSTUS	stop_codon	13380871	13380873	.	+	0	transcript_id "Ledus.S1G130500.t1"; gene_id "Ledus.S1G130500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5761.t1 is derived from g3202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26538301	26540123	.	+	.	Ledus.S1G318200
Ledus.S1	AUGUSTUS	transcript	26538301	26540123	.	+	.	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	start_codon	26538301	26538303	.	+	0	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	CDS	26538301	26538895	0.56	+	0	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	exon	26538301	26538895	.	+	.	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	intron	26538896	26538966	.	+	.	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	CDS	26538967	26539452	0.8	+	2	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	exon	26538967	26539452	.	+	.	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	intron	26539453	26539591	.	+	.	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	CDS	26539592	26539873	0.4	+	2	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	exon	26539592	26539873	.	+	.	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	intron	26539874	26540076	.	+	.	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	CDS	26540077	26540123	0.44	+	2	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	exon	26540077	26540123	.	+	.	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
Ledus.S1	AUGUSTUS	stop_codon	26540124	26540126	.	+	0	transcript_id "Ledus.S1G318200.t1"; gene_id "Ledus.S1G318200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12883.t1 is derived from g4456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	333382	336864	.	-	.	Ledus.C10G002600
Ledus.C10	AUGUSTUS	transcript	333382	336864	.	-	.	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	stop_codon	333379	333381	.	-	0	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	CDS	333382	333422	1	-	2	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	exon	333382	333422	.	-	.	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	intron	333423	333516	.	-	.	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	CDS	333517	333576	1	-	2	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	exon	333517	333576	.	-	.	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	intron	333577	333699	.	-	.	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	CDS	333700	334013	1	-	1	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	exon	333700	334013	.	-	.	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	intron	334014	334105	.	-	.	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	CDS	334106	334458	1	-	0	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	exon	334106	334458	.	-	.	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	intron	334459	334554	.	-	.	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	CDS	334555	336864	0.8	-	0	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	exon	334555	336864	.	-	.	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	start_codon	336862	336864	.	-	0	transcript_id "Ledus.C10G002600.t1"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	transcript	333382	336864	.	-	.	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	stop_codon	333379	333381	.	-	0	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	CDS	333382	333427	0.87	-	1	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	exon	333382	333427	.	-	.	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	intron	333428	333516	.	-	.	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	CDS	333517	333619	0.65	-	2	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	exon	333517	333619	.	-	.	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	intron	333620	333699	.	-	.	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	CDS	333700	334013	0.73	-	1	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	exon	333700	334013	.	-	.	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	intron	334014	334105	.	-	.	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	CDS	334106	334458	1	-	0	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	exon	334106	334458	.	-	.	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	intron	334459	334554	.	-	.	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	CDS	334555	336864	0.78	-	0	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	exon	334555	336864	.	-	.	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
Ledus.C10	AUGUSTUS	start_codon	336862	336864	.	-	0	transcript_id "Ledus.C10G002600.t2"; gene_id "Ledus.C10G002600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg794.t1 is derived from g7655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5132484	5134517	.	+	.	Ledus.S2G067600
Ledus.S2	AUGUSTUS	transcript	5132484	5134517	.	+	.	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	start_codon	5132484	5132486	.	+	0	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	CDS	5132484	5133228	0.61	+	0	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	exon	5132484	5133228	.	+	.	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	intron	5133229	5133321	.	+	.	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	CDS	5133322	5133746	1	+	2	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	exon	5133322	5133746	.	+	.	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	intron	5133747	5133819	.	+	.	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	CDS	5133820	5133951	1	+	0	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	exon	5133820	5133951	.	+	.	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	intron	5133952	5134019	.	+	.	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	CDS	5134020	5134517	1	+	0	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	exon	5134020	5134517	.	+	.	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
Ledus.S2	AUGUSTUS	stop_codon	5134518	5134520	.	+	0	transcript_id "Ledus.S2G067600.t1"; gene_id "Ledus.S2G067600"
# This transcript jg10278.t2 is derived from g11308.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10279.t1 is derived from g11309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13979621	13981102	.	-	.	Ledus.S3G175600
Ledus.S3	AUGUSTUS	transcript	13979621	13981102	.	-	.	transcript_id "Ledus.S3G175600.t1"; gene_id "Ledus.S3G175600"
Ledus.S3	AUGUSTUS	stop_codon	13979618	13979620	.	-	0	transcript_id "Ledus.S3G175600.t1"; gene_id "Ledus.S3G175600"
Ledus.S3	AUGUSTUS	CDS	13979621	13980525	1	-	2	transcript_id "Ledus.S3G175600.t1"; gene_id "Ledus.S3G175600"
Ledus.S3	AUGUSTUS	exon	13979621	13980525	.	-	.	transcript_id "Ledus.S3G175600.t1"; gene_id "Ledus.S3G175600"
Ledus.S3	AUGUSTUS	intron	13980526	13980687	.	-	.	transcript_id "Ledus.S3G175600.t1"; gene_id "Ledus.S3G175600"
Ledus.S3	AUGUSTUS	CDS	13980688	13980789	1	-	2	transcript_id "Ledus.S3G175600.t1"; gene_id "Ledus.S3G175600"
Ledus.S3	AUGUSTUS	exon	13980688	13980789	.	-	.	transcript_id "Ledus.S3G175600.t1"; gene_id "Ledus.S3G175600"
Ledus.S3	AUGUSTUS	intron	13980790	13981023	.	-	.	transcript_id "Ledus.S3G175600.t1"; gene_id "Ledus.S3G175600"
Ledus.S3	AUGUSTUS	CDS	13981024	13981102	0.99	-	0	transcript_id "Ledus.S3G175600.t1"; gene_id "Ledus.S3G175600"
Ledus.S3	AUGUSTUS	exon	13981024	13981102	.	-	.	transcript_id "Ledus.S3G175600.t1"; gene_id "Ledus.S3G175600"
Ledus.S3	AUGUSTUS	start_codon	13981100	13981102	.	-	0	transcript_id "Ledus.S3G175600.t1"; gene_id "Ledus.S3G175600"
# This transcript jg2727.t2 is derived from g161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2728.t1 is derived from g162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2570121	2571387	.	+	.	Ledus.S1G014900
Ledus.S1	AUGUSTUS	transcript	2570121	2571387	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	start_codon	2570121	2570123	.	+	0	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	CDS	2570121	2570176	1	+	0	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	exon	2570121	2570176	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	intron	2570177	2570253	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	CDS	2570254	2570344	1	+	1	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	exon	2570254	2570344	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	intron	2570345	2570430	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	CDS	2570431	2570522	1	+	0	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	exon	2570431	2570522	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	intron	2570523	2570598	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	CDS	2570599	2570692	1	+	1	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	exon	2570599	2570692	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	intron	2570693	2570778	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	CDS	2570779	2570858	1	+	0	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	exon	2570779	2570858	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	intron	2570859	2570935	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	CDS	2570936	2571022	1	+	1	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	exon	2570936	2571022	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	intron	2571023	2571106	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	CDS	2571107	2571206	1	+	1	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	exon	2571107	2571206	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	intron	2571207	2571297	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	CDS	2571298	2571387	1	+	0	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	exon	2571298	2571387	.	+	.	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
Ledus.S1	AUGUSTUS	stop_codon	2571388	2571390	.	+	0	transcript_id "Ledus.S1G014900.t1"; gene_id "Ledus.S1G014900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3186.t1 is derived from g621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6654932	6662751	.	-	.	Ledus.S1G060700
Ledus.S1	AUGUSTUS	transcript	6654932	6662751	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	stop_codon	6654929	6654931	.	-	0	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6654932	6655081	1	-	0	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6654932	6655081	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6655082	6655231	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6655232	6655338	1	-	2	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6655232	6655338	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6655339	6655444	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6655445	6655604	0.99	-	0	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6655445	6655604	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6655605	6655755	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6655756	6655815	1	-	0	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6655756	6655815	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6655816	6656060	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6656061	6656117	1	-	0	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6656061	6656117	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6656118	6657099	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6657100	6657153	1	-	0	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6657100	6657153	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6657154	6657284	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6657285	6657509	1	-	0	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6657285	6657509	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6657510	6657595	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6657596	6658182	1	-	2	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6657596	6658182	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6658183	6658314	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6658315	6658506	0.84	-	2	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6658315	6658506	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6658507	6658593	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6658594	6658805	0.84	-	1	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6658594	6658805	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6658806	6658985	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6658986	6659689	0.97	-	0	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6658986	6659689	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6659690	6659838	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6659839	6660657	1	-	0	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6659839	6660657	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6660658	6660946	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6660947	6661032	1	-	2	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6660947	6661032	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	intron	6661033	6661643	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	CDS	6661644	6662751	0.89	-	0	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	exon	6661644	6662751	.	-	.	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
Ledus.S1	AUGUSTUS	start_codon	6662749	6662751	.	-	0	transcript_id "Ledus.S1G060700.t1"; gene_id "Ledus.S1G060700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6131.t1 is derived from g3574.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29085883	29093423	.	-	.	Ledus.S1G355200
Ledus.S1	AUGUSTUS	transcript	29085883	29093423	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	stop_codon	29085880	29085882	.	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29085883	29086666	0.75	-	1	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29085883	29086666	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29086667	29086821	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29086822	29087069	1	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29086822	29087069	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29087070	29087333	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29087334	29087468	1	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29087334	29087468	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29087469	29087798	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29087799	29087954	0.99	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29087799	29087954	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29087955	29088068	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29088069	29088180	0.64	-	1	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29088069	29088180	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29088181	29088285	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29088286	29088413	1	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29088286	29088413	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29088414	29088511	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29088512	29088646	1	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29088512	29088646	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29088647	29088777	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29088778	29088903	0.99	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29088778	29088903	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29088904	29089017	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29089018	29089206	0.9	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29089018	29089206	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29089207	29089393	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29089394	29089516	1	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29089394	29089516	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29089517	29089612	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29089613	29089741	1	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29089613	29089741	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29089742	29089900	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29089901	29090239	1	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29089901	29090239	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29090240	29090393	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29090394	29093423	0.84	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29090394	29093423	.	-	.	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	start_codon	29093421	29093423	.	-	0	transcript_id "Ledus.S1G355200.t1"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	transcript	29085883	29093423	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	stop_codon	29085880	29085882	.	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29085883	29086666	0.7	-	1	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29085883	29086666	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29086667	29086821	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29086822	29087069	1	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29086822	29087069	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29087070	29087333	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29087334	29087468	1	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29087334	29087468	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29087469	29087645	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29087646	29087954	0.93	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29087646	29087954	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29087955	29088068	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29088069	29088180	0.57	-	1	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29088069	29088180	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29088181	29088285	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29088286	29088413	0.99	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29088286	29088413	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29088414	29088511	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29088512	29088646	1	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29088512	29088646	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29088647	29088777	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29088778	29088903	1	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29088778	29088903	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29088904	29089017	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29089018	29089206	0.9	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29089018	29089206	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29089207	29089393	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29089394	29089516	1	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29089394	29089516	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29089517	29089612	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29089613	29089741	1	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29089613	29089741	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29089742	29089900	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29089901	29090239	0.99	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29089901	29090239	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	intron	29090240	29090393	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	CDS	29090394	29093423	0.88	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	exon	29090394	29093423	.	-	.	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
Ledus.S1	AUGUSTUS	start_codon	29093421	29093423	.	-	0	transcript_id "Ledus.S1G355200.t2"; gene_id "Ledus.S1G355200"
# This transcript jg5398.t2 is derived from g2837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5399.t1 is derived from g2838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23996362	23997909	.	+	.	Ledus.S1G282000
Ledus.S1	AUGUSTUS	transcript	23996362	23997909	.	+	.	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	start_codon	23996362	23996364	.	+	0	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	CDS	23996362	23996658	1	+	0	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	exon	23996362	23996658	.	+	.	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	intron	23996659	23996762	.	+	.	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	CDS	23996763	23996871	0.87	+	0	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	exon	23996763	23996871	.	+	.	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	intron	23996872	23996951	.	+	.	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	CDS	23996952	23997136	0.79	+	2	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	exon	23996952	23997136	.	+	.	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	intron	23997137	23997257	.	+	.	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	CDS	23997258	23997285	1	+	0	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	exon	23997258	23997285	.	+	.	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	intron	23997286	23997506	.	+	.	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	CDS	23997507	23997615	1	+	2	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	exon	23997507	23997615	.	+	.	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	intron	23997616	23997827	.	+	.	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	CDS	23997828	23997909	1	+	1	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	exon	23997828	23997909	.	+	.	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
Ledus.S1	AUGUSTUS	stop_codon	23997910	23997912	.	+	0	transcript_id "Ledus.S1G282000.t1"; gene_id "Ledus.S1G282000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9712.t1 is derived from g10742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9239579	9240410	.	+	.	Ledus.S3G118900
Ledus.S3	AUGUSTUS	transcript	9239579	9240410	.	+	.	transcript_id "Ledus.S3G118900.t1"; gene_id "Ledus.S3G118900"
Ledus.S3	AUGUSTUS	start_codon	9239579	9239581	.	+	0	transcript_id "Ledus.S3G118900.t1"; gene_id "Ledus.S3G118900"
Ledus.S3	AUGUSTUS	CDS	9239579	9239702	0.96	+	0	transcript_id "Ledus.S3G118900.t1"; gene_id "Ledus.S3G118900"
Ledus.S3	AUGUSTUS	exon	9239579	9239702	.	+	.	transcript_id "Ledus.S3G118900.t1"; gene_id "Ledus.S3G118900"
Ledus.S3	AUGUSTUS	intron	9239703	9239778	.	+	.	transcript_id "Ledus.S3G118900.t1"; gene_id "Ledus.S3G118900"
Ledus.S3	AUGUSTUS	CDS	9239779	9240410	0.99	+	2	transcript_id "Ledus.S3G118900.t1"; gene_id "Ledus.S3G118900"
Ledus.S3	AUGUSTUS	exon	9239779	9240410	.	+	.	transcript_id "Ledus.S3G118900.t1"; gene_id "Ledus.S3G118900"
Ledus.S3	AUGUSTUS	stop_codon	9240411	9240413	.	+	0	transcript_id "Ledus.S3G118900.t1"; gene_id "Ledus.S3G118900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4864.t1 is derived from g2302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20428054	20431089	.	+	.	Ledus.S1G228500
Ledus.S1	AUGUSTUS	transcript	20428054	20431089	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	start_codon	20428054	20428056	.	+	0	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	CDS	20428054	20428361	0.56	+	0	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	exon	20428054	20428361	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	intron	20428362	20428478	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	CDS	20428479	20428686	0.55	+	1	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	exon	20428479	20428686	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	intron	20428687	20428771	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	CDS	20428772	20428890	1	+	0	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	exon	20428772	20428890	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	intron	20428891	20429022	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	CDS	20429023	20429114	1	+	1	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	exon	20429023	20429114	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	intron	20429115	20429236	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	CDS	20429237	20429775	0.98	+	2	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	exon	20429237	20429775	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	intron	20429776	20429913	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	CDS	20429914	20430024	1	+	0	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	exon	20429914	20430024	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	intron	20430025	20430112	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	CDS	20430113	20430250	1	+	0	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	exon	20430113	20430250	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	intron	20430251	20430347	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	CDS	20430348	20430395	0.98	+	0	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	exon	20430348	20430395	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	intron	20430396	20430498	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	CDS	20430499	20430579	1	+	0	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	exon	20430499	20430579	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	intron	20430580	20430725	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	CDS	20430726	20430885	1	+	0	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	exon	20430726	20430885	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	intron	20430886	20430970	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	CDS	20430971	20431089	0.92	+	2	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	exon	20430971	20431089	.	+	.	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
Ledus.S1	AUGUSTUS	stop_codon	20431090	20431092	.	+	0	transcript_id "Ledus.S1G228500.t1"; gene_id "Ledus.S1G228500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4648.t1 is derived from g2086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18634235	18635189	.	-	.	Ledus.S1G206900
Ledus.S1	AUGUSTUS	transcript	18634235	18635189	.	-	.	transcript_id "Ledus.S1G206900.t1"; gene_id "Ledus.S1G206900"
Ledus.S1	AUGUSTUS	stop_codon	18634232	18634234	.	-	0	transcript_id "Ledus.S1G206900.t1"; gene_id "Ledus.S1G206900"
Ledus.S1	AUGUSTUS	CDS	18634235	18634504	0.91	-	0	transcript_id "Ledus.S1G206900.t1"; gene_id "Ledus.S1G206900"
Ledus.S1	AUGUSTUS	exon	18634235	18634504	.	-	.	transcript_id "Ledus.S1G206900.t1"; gene_id "Ledus.S1G206900"
Ledus.S1	AUGUSTUS	intron	18634505	18634591	.	-	.	transcript_id "Ledus.S1G206900.t1"; gene_id "Ledus.S1G206900"
Ledus.S1	AUGUSTUS	CDS	18634592	18634638	0.8	-	2	transcript_id "Ledus.S1G206900.t1"; gene_id "Ledus.S1G206900"
Ledus.S1	AUGUSTUS	exon	18634592	18634638	.	-	.	transcript_id "Ledus.S1G206900.t1"; gene_id "Ledus.S1G206900"
Ledus.S1	AUGUSTUS	intron	18634639	18634987	.	-	.	transcript_id "Ledus.S1G206900.t1"; gene_id "Ledus.S1G206900"
Ledus.S1	AUGUSTUS	CDS	18634988	18635189	0.43	-	0	transcript_id "Ledus.S1G206900.t1"; gene_id "Ledus.S1G206900"
Ledus.S1	AUGUSTUS	exon	18634988	18635189	.	-	.	transcript_id "Ledus.S1G206900.t1"; gene_id "Ledus.S1G206900"
Ledus.S1	AUGUSTUS	start_codon	18635187	18635189	.	-	0	transcript_id "Ledus.S1G206900.t1"; gene_id "Ledus.S1G206900"
# This transcript jg12945.t2 is derived from g6755.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12946.t1 is derived from g6756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	425763	426131	.	+	.	Ledus.S6G000800
Ledus.S6	AUGUSTUS	transcript	425763	426131	.	+	.	transcript_id "Ledus.S6G000800.t1"; gene_id "Ledus.S6G000800"
Ledus.S6	AUGUSTUS	start_codon	425763	425765	.	+	0	transcript_id "Ledus.S6G000800.t1"; gene_id "Ledus.S6G000800"
Ledus.S6	AUGUSTUS	CDS	425763	426131	0.96	+	0	transcript_id "Ledus.S6G000800.t1"; gene_id "Ledus.S6G000800"
Ledus.S6	AUGUSTUS	exon	425763	426131	.	+	.	transcript_id "Ledus.S6G000800.t1"; gene_id "Ledus.S6G000800"
Ledus.S6	AUGUSTUS	stop_codon	426132	426134	.	+	0	transcript_id "Ledus.S6G000800.t1"; gene_id "Ledus.S6G000800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7586.t1 is derived from g12257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4205639	4205845	.	+	.	Ledus.S5G036400
Ledus.S5	AUGUSTUS	transcript	4205639	4205845	.	+	.	transcript_id "Ledus.S5G036400.t1"; gene_id "Ledus.S5G036400"
Ledus.S5	AUGUSTUS	start_codon	4205639	4205641	.	+	0	transcript_id "Ledus.S5G036400.t1"; gene_id "Ledus.S5G036400"
Ledus.S5	AUGUSTUS	CDS	4205639	4205845	0.61	+	0	transcript_id "Ledus.S5G036400.t1"; gene_id "Ledus.S5G036400"
Ledus.S5	AUGUSTUS	exon	4205639	4205845	.	+	.	transcript_id "Ledus.S5G036400.t1"; gene_id "Ledus.S5G036400"
Ledus.S5	AUGUSTUS	stop_codon	4205846	4205848	.	+	0	transcript_id "Ledus.S5G036400.t1"; gene_id "Ledus.S5G036400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3536.t1 is derived from g972.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9328879	9330775	.	-	.	Ledus.S1G095700
Ledus.S1	AUGUSTUS	transcript	9328879	9330775	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	stop_codon	9328876	9328878	.	-	0	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	CDS	9328879	9328880	1	-	2	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	exon	9328879	9328880	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	intron	9328881	9328966	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	CDS	9328967	9329150	1	-	0	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	exon	9328967	9329150	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	intron	9329151	9329297	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	CDS	9329298	9329371	1	-	2	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	exon	9329298	9329371	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	intron	9329372	9329485	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	CDS	9329486	9329627	1	-	0	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	exon	9329486	9329627	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	intron	9329628	9329747	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	CDS	9329748	9329849	1	-	0	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	exon	9329748	9329849	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	intron	9329850	9330006	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	CDS	9330007	9330100	1	-	1	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	exon	9330007	9330100	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	intron	9330101	9330205	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	CDS	9330206	9330268	1	-	1	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	exon	9330206	9330268	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	intron	9330269	9330427	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	CDS	9330428	9330515	1	-	2	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	exon	9330428	9330515	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	intron	9330516	9330753	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	CDS	9330754	9330775	0.8	-	0	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	exon	9330754	9330775	.	-	.	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
Ledus.S1	AUGUSTUS	start_codon	9330773	9330775	.	-	0	transcript_id "Ledus.S1G095700.t1"; gene_id "Ledus.S1G095700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8016.t1 is derived from g12687.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8490572	8491384	.	-	.	Ledus.S5G079400
Ledus.S5	AUGUSTUS	transcript	8490572	8491384	.	-	.	transcript_id "Ledus.S5G079400.t1"; gene_id "Ledus.S5G079400"
Ledus.S5	AUGUSTUS	stop_codon	8490569	8490571	.	-	0	transcript_id "Ledus.S5G079400.t1"; gene_id "Ledus.S5G079400"
Ledus.S5	AUGUSTUS	CDS	8490572	8491384	0.91	-	0	transcript_id "Ledus.S5G079400.t1"; gene_id "Ledus.S5G079400"
Ledus.S5	AUGUSTUS	exon	8490572	8491384	.	-	.	transcript_id "Ledus.S5G079400.t1"; gene_id "Ledus.S5G079400"
Ledus.S5	AUGUSTUS	start_codon	8491382	8491384	.	-	0	transcript_id "Ledus.S5G079400.t1"; gene_id "Ledus.S5G079400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9485.t1 is derived from g10515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7316127	7317037	.	+	.	Ledus.S3G096200
Ledus.S3	AUGUSTUS	transcript	7316127	7317037	.	+	.	transcript_id "Ledus.S3G096200.t1"; gene_id "Ledus.S3G096200"
Ledus.S3	AUGUSTUS	start_codon	7316127	7316129	.	+	0	transcript_id "Ledus.S3G096200.t1"; gene_id "Ledus.S3G096200"
Ledus.S3	AUGUSTUS	CDS	7316127	7316261	0.68	+	0	transcript_id "Ledus.S3G096200.t1"; gene_id "Ledus.S3G096200"
Ledus.S3	AUGUSTUS	exon	7316127	7316261	.	+	.	transcript_id "Ledus.S3G096200.t1"; gene_id "Ledus.S3G096200"
Ledus.S3	AUGUSTUS	intron	7316262	7316371	.	+	.	transcript_id "Ledus.S3G096200.t1"; gene_id "Ledus.S3G096200"
Ledus.S3	AUGUSTUS	CDS	7316372	7317037	0.39	+	0	transcript_id "Ledus.S3G096200.t1"; gene_id "Ledus.S3G096200"
Ledus.S3	AUGUSTUS	exon	7316372	7317037	.	+	.	transcript_id "Ledus.S3G096200.t1"; gene_id "Ledus.S3G096200"
Ledus.S3	AUGUSTUS	stop_codon	7317038	7317040	.	+	0	transcript_id "Ledus.S3G096200.t1"; gene_id "Ledus.S3G096200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7868.t1 is derived from g12539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7540044	7541735	.	-	.	Ledus.S5G064600
Ledus.S5	AUGUSTUS	transcript	7540044	7541735	.	-	.	transcript_id "Ledus.S5G064600.t1"; gene_id "Ledus.S5G064600"
Ledus.S5	AUGUSTUS	stop_codon	7540041	7540043	.	-	0	transcript_id "Ledus.S5G064600.t1"; gene_id "Ledus.S5G064600"
Ledus.S5	AUGUSTUS	CDS	7540044	7541735	0.59	-	0	transcript_id "Ledus.S5G064600.t1"; gene_id "Ledus.S5G064600"
Ledus.S5	AUGUSTUS	exon	7540044	7541735	.	-	.	transcript_id "Ledus.S5G064600.t1"; gene_id "Ledus.S5G064600"
Ledus.S5	AUGUSTUS	start_codon	7541733	7541735	.	-	0	transcript_id "Ledus.S5G064600.t1"; gene_id "Ledus.S5G064600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1033.t1 is derived from g7894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6884121	6884678	.	-	.	Ledus.S2G091500
Ledus.S2	AUGUSTUS	transcript	6884121	6884678	.	-	.	transcript_id "Ledus.S2G091500.t1"; gene_id "Ledus.S2G091500"
Ledus.S2	AUGUSTUS	stop_codon	6884118	6884120	.	-	0	transcript_id "Ledus.S2G091500.t1"; gene_id "Ledus.S2G091500"
Ledus.S2	AUGUSTUS	CDS	6884121	6884219	0.91	-	0	transcript_id "Ledus.S2G091500.t1"; gene_id "Ledus.S2G091500"
Ledus.S2	AUGUSTUS	exon	6884121	6884219	.	-	.	transcript_id "Ledus.S2G091500.t1"; gene_id "Ledus.S2G091500"
Ledus.S2	AUGUSTUS	intron	6884220	6884305	.	-	.	transcript_id "Ledus.S2G091500.t1"; gene_id "Ledus.S2G091500"
Ledus.S2	AUGUSTUS	CDS	6884306	6884371	1	-	0	transcript_id "Ledus.S2G091500.t1"; gene_id "Ledus.S2G091500"
Ledus.S2	AUGUSTUS	exon	6884306	6884371	.	-	.	transcript_id "Ledus.S2G091500.t1"; gene_id "Ledus.S2G091500"
Ledus.S2	AUGUSTUS	intron	6884372	6884456	.	-	.	transcript_id "Ledus.S2G091500.t1"; gene_id "Ledus.S2G091500"
Ledus.S2	AUGUSTUS	CDS	6884457	6884678	0.82	-	0	transcript_id "Ledus.S2G091500.t1"; gene_id "Ledus.S2G091500"
Ledus.S2	AUGUSTUS	exon	6884457	6884678	.	-	.	transcript_id "Ledus.S2G091500.t1"; gene_id "Ledus.S2G091500"
Ledus.S2	AUGUSTUS	start_codon	6884676	6884678	.	-	0	transcript_id "Ledus.S2G091500.t1"; gene_id "Ledus.S2G091500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1410.t1 is derived from g8271.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9925202	9927828	.	-	.	Ledus.S2G129200
Ledus.S2	AUGUSTUS	transcript	9926589	9927828	.	-	.	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	stop_codon	9926586	9926588	.	-	0	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9926589	9926590	1	-	2	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9926589	9926590	.	-	.	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9926591	9926686	.	-	.	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9926687	9926811	1	-	1	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9926687	9926811	.	-	.	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9926812	9926900	.	-	.	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9926901	9926911	1	-	0	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9926901	9926911	.	-	.	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9926912	9926986	.	-	.	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9926987	9927076	1	-	0	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9926987	9927076	.	-	.	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9927077	9927195	.	-	.	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9927196	9927306	0.32	-	0	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9927196	9927306	.	-	.	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9927307	9927612	.	-	.	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9927613	9927828	0.4	-	0	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9927613	9927828	.	-	.	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	start_codon	9927826	9927828	.	-	0	transcript_id "Ledus.S2G129200.t1"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	transcript	9925202	9927306	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	stop_codon	9925199	9925201	.	-	0	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9925202	9925357	0.96	-	0	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9925202	9925357	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9925358	9925448	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9925449	9925584	0.87	-	1	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9925449	9925584	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9925585	9925747	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9925748	9925936	0.91	-	1	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9925748	9925936	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9925937	9926018	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9926019	9926089	1	-	0	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9926019	9926089	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9926090	9926280	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9926281	9926400	1	-	0	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9926281	9926400	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9926401	9926475	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9926476	9926590	1	-	1	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9926476	9926590	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9926591	9926756	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9926757	9926811	0.54	-	2	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9926757	9926811	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9926812	9926900	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9926901	9926911	0.54	-	1	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9926901	9926911	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9926912	9926986	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9926987	9927054	0.34	-	0	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9926987	9927054	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	intron	9927055	9927144	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	CDS	9927145	9927306	0.23	-	0	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	exon	9927145	9927306	.	-	.	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
Ledus.S2	AUGUSTUS	start_codon	9927304	9927306	.	-	0	transcript_id "Ledus.S2G129200.t2"; gene_id "Ledus.S2G129200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7904.t1 is derived from g12575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7752710	7753805	.	-	.	Ledus.S5G068200
Ledus.S5	AUGUSTUS	transcript	7752710	7753805	.	-	.	transcript_id "Ledus.S5G068200.t1"; gene_id "Ledus.S5G068200"
Ledus.S5	AUGUSTUS	stop_codon	7752707	7752709	.	-	0	transcript_id "Ledus.S5G068200.t1"; gene_id "Ledus.S5G068200"
Ledus.S5	AUGUSTUS	CDS	7752710	7753563	0.86	-	2	transcript_id "Ledus.S5G068200.t1"; gene_id "Ledus.S5G068200"
Ledus.S5	AUGUSTUS	exon	7752710	7753563	.	-	.	transcript_id "Ledus.S5G068200.t1"; gene_id "Ledus.S5G068200"
Ledus.S5	AUGUSTUS	intron	7753564	7753675	.	-	.	transcript_id "Ledus.S5G068200.t1"; gene_id "Ledus.S5G068200"
Ledus.S5	AUGUSTUS	CDS	7753676	7753805	0.85	-	0	transcript_id "Ledus.S5G068200.t1"; gene_id "Ledus.S5G068200"
Ledus.S5	AUGUSTUS	exon	7753676	7753805	.	-	.	transcript_id "Ledus.S5G068200.t1"; gene_id "Ledus.S5G068200"
Ledus.S5	AUGUSTUS	start_codon	7753803	7753805	.	-	0	transcript_id "Ledus.S5G068200.t1"; gene_id "Ledus.S5G068200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10939.t1 is derived from g4557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	733321	734442	.	+	.	Ledus.S4G009500
Ledus.S4	AUGUSTUS	transcript	733321	734442	.	+	.	transcript_id "Ledus.S4G009500.t1"; gene_id "Ledus.S4G009500"
Ledus.S4	AUGUSTUS	start_codon	733321	733323	.	+	0	transcript_id "Ledus.S4G009500.t1"; gene_id "Ledus.S4G009500"
Ledus.S4	AUGUSTUS	CDS	733321	734442	0.72	+	0	transcript_id "Ledus.S4G009500.t1"; gene_id "Ledus.S4G009500"
Ledus.S4	AUGUSTUS	exon	733321	734442	.	+	.	transcript_id "Ledus.S4G009500.t1"; gene_id "Ledus.S4G009500"
Ledus.S4	AUGUSTUS	stop_codon	734443	734445	.	+	0	transcript_id "Ledus.S4G009500.t1"; gene_id "Ledus.S4G009500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1124.t1 is derived from g7985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7682109	7683056	.	-	.	Ledus.S2G100600
Ledus.S2	AUGUSTUS	transcript	7682109	7683056	.	-	.	transcript_id "Ledus.S2G100600.t1"; gene_id "Ledus.S2G100600"
Ledus.S2	AUGUSTUS	stop_codon	7682106	7682108	.	-	0	transcript_id "Ledus.S2G100600.t1"; gene_id "Ledus.S2G100600"
Ledus.S2	AUGUSTUS	CDS	7682109	7682273	0.23	-	0	transcript_id "Ledus.S2G100600.t1"; gene_id "Ledus.S2G100600"
Ledus.S2	AUGUSTUS	exon	7682109	7682273	.	-	.	transcript_id "Ledus.S2G100600.t1"; gene_id "Ledus.S2G100600"
Ledus.S2	AUGUSTUS	intron	7682274	7682466	.	-	.	transcript_id "Ledus.S2G100600.t1"; gene_id "Ledus.S2G100600"
Ledus.S2	AUGUSTUS	CDS	7682467	7682645	0.23	-	2	transcript_id "Ledus.S2G100600.t1"; gene_id "Ledus.S2G100600"
Ledus.S2	AUGUSTUS	exon	7682467	7682645	.	-	.	transcript_id "Ledus.S2G100600.t1"; gene_id "Ledus.S2G100600"
Ledus.S2	AUGUSTUS	intron	7682646	7682803	.	-	.	transcript_id "Ledus.S2G100600.t1"; gene_id "Ledus.S2G100600"
Ledus.S2	AUGUSTUS	CDS	7682804	7683056	0.38	-	0	transcript_id "Ledus.S2G100600.t1"; gene_id "Ledus.S2G100600"
Ledus.S2	AUGUSTUS	exon	7682804	7683056	.	-	.	transcript_id "Ledus.S2G100600.t1"; gene_id "Ledus.S2G100600"
Ledus.S2	AUGUSTUS	start_codon	7683054	7683056	.	-	0	transcript_id "Ledus.S2G100600.t1"; gene_id "Ledus.S2G100600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12188.t1 is derived from g5807.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10222871	10224679	.	+	.	Ledus.S4G134400
Ledus.S4	AUGUSTUS	transcript	10222871	10224679	.	+	.	transcript_id "Ledus.S4G134400.t1"; gene_id "Ledus.S4G134400"
Ledus.S4	AUGUSTUS	start_codon	10222871	10222873	.	+	0	transcript_id "Ledus.S4G134400.t1"; gene_id "Ledus.S4G134400"
Ledus.S4	AUGUSTUS	CDS	10222871	10224340	0.48	+	0	transcript_id "Ledus.S4G134400.t1"; gene_id "Ledus.S4G134400"
Ledus.S4	AUGUSTUS	exon	10222871	10224340	.	+	.	transcript_id "Ledus.S4G134400.t1"; gene_id "Ledus.S4G134400"
Ledus.S4	AUGUSTUS	intron	10224341	10224441	.	+	.	transcript_id "Ledus.S4G134400.t1"; gene_id "Ledus.S4G134400"
Ledus.S4	AUGUSTUS	CDS	10224442	10224490	0.49	+	0	transcript_id "Ledus.S4G134400.t1"; gene_id "Ledus.S4G134400"
Ledus.S4	AUGUSTUS	exon	10224442	10224490	.	+	.	transcript_id "Ledus.S4G134400.t1"; gene_id "Ledus.S4G134400"
Ledus.S4	AUGUSTUS	intron	10224491	10224581	.	+	.	transcript_id "Ledus.S4G134400.t1"; gene_id "Ledus.S4G134400"
Ledus.S4	AUGUSTUS	CDS	10224582	10224679	0.99	+	2	transcript_id "Ledus.S4G134400.t1"; gene_id "Ledus.S4G134400"
Ledus.S4	AUGUSTUS	exon	10224582	10224679	.	+	.	transcript_id "Ledus.S4G134400.t1"; gene_id "Ledus.S4G134400"
Ledus.S4	AUGUSTUS	stop_codon	10224680	10224682	.	+	0	transcript_id "Ledus.S4G134400.t1"; gene_id "Ledus.S4G134400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9683.t1 is derived from g10713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8995415	8995645	.	-	.	Ledus.S3G116000
Ledus.S3	AUGUSTUS	transcript	8995415	8995645	.	-	.	transcript_id "Ledus.S3G116000.t1"; gene_id "Ledus.S3G116000"
Ledus.S3	AUGUSTUS	stop_codon	8995412	8995414	.	-	0	transcript_id "Ledus.S3G116000.t1"; gene_id "Ledus.S3G116000"
Ledus.S3	AUGUSTUS	CDS	8995415	8995645	0.99	-	0	transcript_id "Ledus.S3G116000.t1"; gene_id "Ledus.S3G116000"
Ledus.S3	AUGUSTUS	exon	8995415	8995645	.	-	.	transcript_id "Ledus.S3G116000.t1"; gene_id "Ledus.S3G116000"
Ledus.S3	AUGUSTUS	start_codon	8995643	8995645	.	-	0	transcript_id "Ledus.S3G116000.t1"; gene_id "Ledus.S3G116000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12208.t1 is derived from g5827.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10392193	10393686	.	-	.	Ledus.S4G136400
Ledus.S4	AUGUSTUS	transcript	10392193	10393686	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	stop_codon	10392190	10392192	.	-	0	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	CDS	10392193	10392294	0.99	-	0	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	exon	10392193	10392294	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	intron	10392295	10392430	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	CDS	10392431	10392496	1	-	0	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	exon	10392431	10392496	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	intron	10392497	10392579	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	CDS	10392580	10392630	1	-	0	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	exon	10392580	10392630	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	intron	10392631	10392797	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	CDS	10392798	10392859	1	-	2	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	exon	10392798	10392859	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	intron	10392860	10393023	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	CDS	10393024	10393168	1	-	0	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	exon	10393024	10393168	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	intron	10393169	10393317	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	CDS	10393318	10393385	1	-	2	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	exon	10393318	10393385	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	intron	10393386	10393535	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	CDS	10393536	10393686	0.7	-	0	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	exon	10393536	10393686	.	-	.	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
Ledus.S4	AUGUSTUS	start_codon	10393684	10393686	.	-	0	transcript_id "Ledus.S4G136400.t1"; gene_id "Ledus.S4G136400"
# This transcript jg11063.t2 is derived from g4681.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11064.t1 is derived from g4682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1545163	1546800	.	-	.	Ledus.S4G022000
Ledus.S4	AUGUSTUS	transcript	1545163	1546800	.	-	.	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	stop_codon	1545160	1545162	.	-	0	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	CDS	1545163	1545473	0.43	-	2	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	exon	1545163	1545473	.	-	.	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	intron	1545474	1545589	.	-	.	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	CDS	1545590	1546023	1	-	1	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	exon	1545590	1546023	.	-	.	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	intron	1546024	1546110	.	-	.	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	CDS	1546111	1546193	1	-	0	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	exon	1546111	1546193	.	-	.	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	intron	1546194	1546261	.	-	.	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	CDS	1546262	1546433	1	-	1	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	exon	1546262	1546433	.	-	.	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	intron	1546434	1546514	.	-	.	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	CDS	1546515	1546607	1	-	1	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	exon	1546515	1546607	.	-	.	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	intron	1546608	1546696	.	-	.	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	CDS	1546697	1546800	0.93	-	0	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	exon	1546697	1546800	.	-	.	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
Ledus.S4	AUGUSTUS	start_codon	1546798	1546800	.	-	0	transcript_id "Ledus.S4G022000.t1"; gene_id "Ledus.S4G022000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1420.t1 is derived from g8281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9975007	9975617	.	+	.	Ledus.S2G130200
Ledus.S2	AUGUSTUS	transcript	9975007	9975617	.	+	.	transcript_id "Ledus.S2G130200.t1"; gene_id "Ledus.S2G130200"
Ledus.S2	AUGUSTUS	start_codon	9975007	9975009	.	+	0	transcript_id "Ledus.S2G130200.t1"; gene_id "Ledus.S2G130200"
Ledus.S2	AUGUSTUS	CDS	9975007	9975278	0.56	+	0	transcript_id "Ledus.S2G130200.t1"; gene_id "Ledus.S2G130200"
Ledus.S2	AUGUSTUS	exon	9975007	9975278	.	+	.	transcript_id "Ledus.S2G130200.t1"; gene_id "Ledus.S2G130200"
Ledus.S2	AUGUSTUS	intron	9975279	9975466	.	+	.	transcript_id "Ledus.S2G130200.t1"; gene_id "Ledus.S2G130200"
Ledus.S2	AUGUSTUS	CDS	9975467	9975617	0.51	+	1	transcript_id "Ledus.S2G130200.t1"; gene_id "Ledus.S2G130200"
Ledus.S2	AUGUSTUS	exon	9975467	9975617	.	+	.	transcript_id "Ledus.S2G130200.t1"; gene_id "Ledus.S2G130200"
Ledus.S2	AUGUSTUS	stop_codon	9975618	9975620	.	+	0	transcript_id "Ledus.S2G130200.t1"; gene_id "Ledus.S2G130200"
# This transcript jg8724.t2 is derived from g9754.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8725.t1 is derived from g9755.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1593609	1597845	.	-	.	Ledus.S3G020200
Ledus.S3	AUGUSTUS	transcript	1593609	1597845	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	stop_codon	1593606	1593608	.	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1593609	1593717	0.91	-	1	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1593609	1593717	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1593718	1593812	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1593813	1593922	1	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1593813	1593922	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1593923	1594009	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594010	1594051	1	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594010	1594051	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594052	1594134	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594135	1594236	1	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594135	1594236	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594237	1594337	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594338	1594436	1	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594338	1594436	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594437	1594540	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594541	1594601	0.98	-	1	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594541	1594601	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594602	1594701	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594702	1594823	0.99	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594702	1594823	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594824	1594934	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594935	1595020	0.99	-	2	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594935	1595020	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595021	1595110	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595111	1595195	1	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595111	1595195	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595196	1595301	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595302	1595385	0.66	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595302	1595385	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595386	1595477	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595478	1595551	0.96	-	2	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595478	1595551	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595552	1595652	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595653	1595716	1	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595653	1595716	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595717	1595789	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595790	1595858	1	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595790	1595858	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595859	1595960	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595961	1596124	0.9	-	2	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595961	1596124	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1596125	1596288	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1596289	1596293	1	-	1	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1596289	1596293	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1596294	1596352	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1596353	1596358	1	-	1	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1596353	1596358	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1596359	1597120	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1597121	1597215	0.91	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1597121	1597215	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1597216	1597509	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1597510	1597542	0.42	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1597510	1597542	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1597543	1597740	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1597741	1597845	0.36	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1597741	1597845	.	-	.	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	start_codon	1597843	1597845	.	-	0	transcript_id "Ledus.S3G020200.t1"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	transcript	1593609	1597526	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	stop_codon	1593606	1593608	.	-	0	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1593609	1593717	0.95	-	1	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1593609	1593717	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1593718	1593812	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1593813	1593922	1	-	0	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1593813	1593922	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1593923	1594009	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594010	1594051	1	-	0	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594010	1594051	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594052	1594134	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594135	1594236	1	-	0	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594135	1594236	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594237	1594337	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594338	1594436	1	-	0	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594338	1594436	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594437	1594540	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594541	1594601	0.99	-	1	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594541	1594601	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594602	1594701	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594702	1594823	0.99	-	0	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594702	1594823	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594824	1594934	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594935	1595020	1	-	2	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594935	1595020	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595021	1595110	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595111	1595195	1	-	0	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595111	1595195	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595196	1595301	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595302	1595385	0.72	-	0	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595302	1595385	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595386	1595477	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595478	1595551	0.96	-	2	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595478	1595551	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595552	1595652	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595653	1595716	0.99	-	0	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595653	1595716	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595717	1595789	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595790	1595858	1	-	0	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595790	1595858	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595859	1595960	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595961	1596124	0.9	-	2	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595961	1596124	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1596125	1596288	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1596289	1596293	0.54	-	1	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1596289	1596293	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1596294	1596352	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1596353	1596358	0.45	-	1	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1596353	1596358	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1596359	1597509	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1597510	1597526	0.41	-	0	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1597510	1597526	.	-	.	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	start_codon	1597524	1597526	.	-	0	transcript_id "Ledus.S3G020200.t2"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	transcript	1593609	1597845	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	stop_codon	1593606	1593608	.	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1593609	1593717	0.88	-	1	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1593609	1593717	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1593718	1593812	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1593813	1593922	1	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1593813	1593922	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1593923	1594009	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594010	1594051	1	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594010	1594051	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594052	1594134	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594135	1594236	1	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594135	1594236	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594237	1594337	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594338	1594436	1	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594338	1594436	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594437	1594540	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594541	1594601	0.99	-	1	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594541	1594601	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594602	1594701	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594702	1594823	1	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594702	1594823	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1594824	1594934	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1594935	1595031	0.82	-	1	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1594935	1595031	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595032	1595110	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595111	1595229	0.69	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595111	1595229	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595230	1595319	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595320	1595385	0.38	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595320	1595385	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595386	1595477	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595478	1595551	0.96	-	2	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595478	1595551	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595552	1595652	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595653	1595716	0.98	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595653	1595716	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595717	1595789	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595790	1595858	1	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595790	1595858	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1595859	1595960	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1595961	1596124	0.9	-	2	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1595961	1596124	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1596125	1596288	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1596289	1596293	1	-	1	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1596289	1596293	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1596294	1596352	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1596353	1596358	1	-	1	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1596353	1596358	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1596359	1597120	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1597121	1597215	0.89	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1597121	1597215	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1597216	1597509	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1597510	1597542	0.43	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1597510	1597542	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	intron	1597543	1597740	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	CDS	1597741	1597845	0.3	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	exon	1597741	1597845	.	-	.	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
Ledus.S3	AUGUSTUS	start_codon	1597843	1597845	.	-	0	transcript_id "Ledus.S3G020200.t3"; gene_id "Ledus.S3G020200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg90.t1 is derived from g9503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	383943	385328	.	-	.	Ledus.C8G005000
Ledus.C8	AUGUSTUS	transcript	383943	385328	.	-	.	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	stop_codon	383940	383942	.	-	0	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	CDS	383943	384329	1	-	0	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	exon	383943	384329	.	-	.	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	intron	384330	384434	.	-	.	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	CDS	384435	384548	0.98	-	0	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	exon	384435	384548	.	-	.	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	intron	384549	384630	.	-	.	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	CDS	384631	384699	0.99	-	0	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	exon	384631	384699	.	-	.	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	intron	384700	384800	.	-	.	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	CDS	384801	384905	1	-	0	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	exon	384801	384905	.	-	.	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	intron	384906	384992	.	-	.	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	CDS	384993	385124	1	-	0	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	exon	384993	385124	.	-	.	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	intron	385125	385211	.	-	.	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	CDS	385212	385328	0.94	-	0	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	exon	385212	385328	.	-	.	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
Ledus.C8	AUGUSTUS	start_codon	385326	385328	.	-	0	transcript_id "Ledus.C8G005000.t1"; gene_id "Ledus.C8G005000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3017.t1 is derived from g452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5353512	5353781	.	+	.	Ledus.S1G043800
Ledus.S1	AUGUSTUS	transcript	5353512	5353781	.	+	.	transcript_id "Ledus.S1G043800.t1"; gene_id "Ledus.S1G043800"
Ledus.S1	AUGUSTUS	start_codon	5353512	5353514	.	+	0	transcript_id "Ledus.S1G043800.t1"; gene_id "Ledus.S1G043800"
Ledus.S1	AUGUSTUS	CDS	5353512	5353781	1	+	0	transcript_id "Ledus.S1G043800.t1"; gene_id "Ledus.S1G043800"
Ledus.S1	AUGUSTUS	exon	5353512	5353781	.	+	.	transcript_id "Ledus.S1G043800.t1"; gene_id "Ledus.S1G043800"
Ledus.S1	AUGUSTUS	stop_codon	5353782	5353784	.	+	0	transcript_id "Ledus.S1G043800.t1"; gene_id "Ledus.S1G043800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9229.t1 is derived from g10259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5514126	5516551	.	+	.	Ledus.S3G070600
Ledus.S3	AUGUSTUS	transcript	5514126	5516551	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	start_codon	5514126	5514128	.	+	0	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	CDS	5514126	5514392	1	+	0	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	exon	5514126	5514392	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	intron	5514393	5514562	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	CDS	5514563	5514646	1	+	0	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	exon	5514563	5514646	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	intron	5514647	5514851	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	CDS	5514852	5515006	1	+	0	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	exon	5514852	5515006	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	intron	5515007	5515088	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	CDS	5515089	5515186	1	+	1	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	exon	5515089	5515186	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	intron	5515187	5515380	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	CDS	5515381	5515489	0.99	+	2	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	exon	5515381	5515489	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	intron	5515490	5515592	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	CDS	5515593	5515750	0.99	+	1	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	exon	5515593	5515750	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	intron	5515751	5515892	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	CDS	5515893	5516035	1	+	2	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	exon	5515893	5516035	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	intron	5516036	5516175	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	CDS	5516176	5516316	1	+	0	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	exon	5516176	5516316	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	intron	5516317	5516422	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	CDS	5516423	5516551	1	+	0	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	exon	5516423	5516551	.	+	.	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
Ledus.S3	AUGUSTUS	stop_codon	5516552	5516554	.	+	0	transcript_id "Ledus.S3G070600.t1"; gene_id "Ledus.S3G070600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4932.t1 is derived from g2370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20742169	20742516	.	+	.	Ledus.S1G235300
Ledus.S1	AUGUSTUS	transcript	20742169	20742516	.	+	.	transcript_id "Ledus.S1G235300.t1"; gene_id "Ledus.S1G235300"
Ledus.S1	AUGUSTUS	start_codon	20742169	20742171	.	+	0	transcript_id "Ledus.S1G235300.t1"; gene_id "Ledus.S1G235300"
Ledus.S1	AUGUSTUS	CDS	20742169	20742375	0.57	+	0	transcript_id "Ledus.S1G235300.t1"; gene_id "Ledus.S1G235300"
Ledus.S1	AUGUSTUS	exon	20742169	20742375	.	+	.	transcript_id "Ledus.S1G235300.t1"; gene_id "Ledus.S1G235300"
Ledus.S1	AUGUSTUS	intron	20742376	20742471	.	+	.	transcript_id "Ledus.S1G235300.t1"; gene_id "Ledus.S1G235300"
Ledus.S1	AUGUSTUS	CDS	20742472	20742516	0.98	+	0	transcript_id "Ledus.S1G235300.t1"; gene_id "Ledus.S1G235300"
Ledus.S1	AUGUSTUS	exon	20742472	20742516	.	+	.	transcript_id "Ledus.S1G235300.t1"; gene_id "Ledus.S1G235300"
Ledus.S1	AUGUSTUS	stop_codon	20742517	20742519	.	+	0	transcript_id "Ledus.S1G235300.t1"; gene_id "Ledus.S1G235300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4401.t1 is derived from g1837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16898768	16900341	.	-	.	Ledus.S1G182200
Ledus.S1	AUGUSTUS	transcript	16898768	16900341	.	-	.	transcript_id "Ledus.S1G182200.t1"; gene_id "Ledus.S1G182200"
Ledus.S1	AUGUSTUS	stop_codon	16898765	16898767	.	-	0	transcript_id "Ledus.S1G182200.t1"; gene_id "Ledus.S1G182200"
Ledus.S1	AUGUSTUS	CDS	16898768	16899045	0.8	-	2	transcript_id "Ledus.S1G182200.t1"; gene_id "Ledus.S1G182200"
Ledus.S1	AUGUSTUS	exon	16898768	16899045	.	-	.	transcript_id "Ledus.S1G182200.t1"; gene_id "Ledus.S1G182200"
Ledus.S1	AUGUSTUS	intron	16899046	16899129	.	-	.	transcript_id "Ledus.S1G182200.t1"; gene_id "Ledus.S1G182200"
Ledus.S1	AUGUSTUS	CDS	16899130	16899361	1	-	0	transcript_id "Ledus.S1G182200.t1"; gene_id "Ledus.S1G182200"
Ledus.S1	AUGUSTUS	exon	16899130	16899361	.	-	.	transcript_id "Ledus.S1G182200.t1"; gene_id "Ledus.S1G182200"
Ledus.S1	AUGUSTUS	intron	16899362	16899447	.	-	.	transcript_id "Ledus.S1G182200.t1"; gene_id "Ledus.S1G182200"
Ledus.S1	AUGUSTUS	CDS	16899448	16900341	0.76	-	0	transcript_id "Ledus.S1G182200.t1"; gene_id "Ledus.S1G182200"
Ledus.S1	AUGUSTUS	exon	16899448	16900341	.	-	.	transcript_id "Ledus.S1G182200.t1"; gene_id "Ledus.S1G182200"
Ledus.S1	AUGUSTUS	start_codon	16900339	16900341	.	-	0	transcript_id "Ledus.S1G182200.t1"; gene_id "Ledus.S1G182200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12953.t1 is derived from g6763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	841338	841640	.	-	.	Ledus.S6G001500
Ledus.S6	AUGUSTUS	transcript	841338	841640	.	-	.	transcript_id "Ledus.S6G001500.t1"; gene_id "Ledus.S6G001500"
Ledus.S6	AUGUSTUS	stop_codon	841335	841337	.	-	0	transcript_id "Ledus.S6G001500.t1"; gene_id "Ledus.S6G001500"
Ledus.S6	AUGUSTUS	CDS	841338	841640	1	-	0	transcript_id "Ledus.S6G001500.t1"; gene_id "Ledus.S6G001500"
Ledus.S6	AUGUSTUS	exon	841338	841640	.	-	.	transcript_id "Ledus.S6G001500.t1"; gene_id "Ledus.S6G001500"
Ledus.S6	AUGUSTUS	start_codon	841638	841640	.	-	0	transcript_id "Ledus.S6G001500.t1"; gene_id "Ledus.S6G001500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7929.t1 is derived from g12600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7903684	7904273	.	+	.	Ledus.S5G070700
Ledus.S5	AUGUSTUS	transcript	7903684	7904273	.	+	.	transcript_id "Ledus.S5G070700.t1"; gene_id "Ledus.S5G070700"
Ledus.S5	AUGUSTUS	start_codon	7903684	7903686	.	+	0	transcript_id "Ledus.S5G070700.t1"; gene_id "Ledus.S5G070700"
Ledus.S5	AUGUSTUS	CDS	7903684	7903813	0.97	+	0	transcript_id "Ledus.S5G070700.t1"; gene_id "Ledus.S5G070700"
Ledus.S5	AUGUSTUS	exon	7903684	7903813	.	+	.	transcript_id "Ledus.S5G070700.t1"; gene_id "Ledus.S5G070700"
Ledus.S5	AUGUSTUS	intron	7903814	7904043	.	+	.	transcript_id "Ledus.S5G070700.t1"; gene_id "Ledus.S5G070700"
Ledus.S5	AUGUSTUS	CDS	7904044	7904273	0.72	+	2	transcript_id "Ledus.S5G070700.t1"; gene_id "Ledus.S5G070700"
Ledus.S5	AUGUSTUS	exon	7904044	7904273	.	+	.	transcript_id "Ledus.S5G070700.t1"; gene_id "Ledus.S5G070700"
Ledus.S5	AUGUSTUS	stop_codon	7904274	7904276	.	+	0	transcript_id "Ledus.S5G070700.t1"; gene_id "Ledus.S5G070700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6867.t1 is derived from g4311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34824213	34829053	.	+	.	Ledus.S1G428800
Ledus.S1	AUGUSTUS	transcript	34824213	34829053	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	start_codon	34824213	34824215	.	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34824213	34824454	0.38	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34824213	34824454	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34824455	34824563	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34824564	34824640	0.99	+	1	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34824564	34824640	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34824641	34824725	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34824726	34824772	0.28	+	2	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34824726	34824772	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34824773	34825357	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34825358	34826207	0.66	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34825358	34826207	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34826208	34826365	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34826366	34826460	1	+	2	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34826366	34826460	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34826461	34826612	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34826613	34826721	1	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34826613	34826721	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34826722	34826868	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34826869	34826924	1	+	2	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34826869	34826924	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34826925	34827129	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34827130	34827185	0.98	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34827130	34827185	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34827186	34827297	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34827298	34827436	1	+	1	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34827298	34827436	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34827437	34827528	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34827529	34827666	1	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34827529	34827666	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34827667	34827798	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34827799	34827867	1	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34827799	34827867	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34827868	34827960	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34827961	34828098	0.53	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34827961	34828098	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34828099	34828185	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34828186	34828314	1	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34828186	34828314	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34828315	34828406	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34828407	34828484	1	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34828407	34828484	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34828485	34828590	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34828591	34828662	1	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34828591	34828662	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34828663	34828769	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34828770	34828832	0.55	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34828770	34828832	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	intron	34828833	34828966	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	CDS	34828967	34829053	0.56	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	exon	34828967	34829053	.	+	.	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
Ledus.S1	AUGUSTUS	stop_codon	34829054	34829056	.	+	0	transcript_id "Ledus.S1G428800.t1"; gene_id "Ledus.S1G428800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6833.t1 is derived from g4277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34557180	34560747	.	+	.	Ledus.S1G425400
Ledus.S1	AUGUSTUS	transcript	34557180	34560747	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	start_codon	34557180	34557182	.	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34557180	34557495	0.88	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34557180	34557495	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34557496	34557581	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34557582	34557658	1	+	2	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34557582	34557658	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34557659	34557750	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34557751	34557857	1	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34557751	34557857	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34557858	34557983	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34557984	34558065	1	+	1	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34557984	34558065	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34558066	34558254	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34558255	34558366	1	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34558255	34558366	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34558367	34558462	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34558463	34558509	1	+	2	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34558463	34558509	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34558510	34558602	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34558603	34558677	1	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34558603	34558677	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34558678	34558751	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34558752	34558868	0.99	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34558752	34558868	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34558869	34558979	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34558980	34559048	0.99	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34558980	34559048	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34559049	34559201	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34559202	34559294	1	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34559202	34559294	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34559295	34559392	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34559393	34559495	1	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34559393	34559495	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34559496	34559579	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34559580	34559716	1	+	2	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34559580	34559716	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34559717	34559820	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34559821	34559870	1	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34559821	34559870	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34559871	34559953	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34559954	34560020	1	+	1	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34559954	34560020	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34560021	34560119	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34560120	34560199	1	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34560120	34560199	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34560200	34560286	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34560287	34560415	1	+	1	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34560287	34560415	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34560416	34560482	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34560483	34560549	0.99	+	1	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34560483	34560549	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	intron	34560550	34560666	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	CDS	34560667	34560747	0.86	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	exon	34560667	34560747	.	+	.	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
Ledus.S1	AUGUSTUS	stop_codon	34560748	34560750	.	+	0	transcript_id "Ledus.S1G425400.t1"; gene_id "Ledus.S1G425400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7556.t1 is derived from g12227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4043971	4044782	.	+	.	Ledus.S5G033400
Ledus.S5	AUGUSTUS	transcript	4043971	4044782	.	+	.	transcript_id "Ledus.S5G033400.t1"; gene_id "Ledus.S5G033400"
Ledus.S5	AUGUSTUS	start_codon	4043971	4043973	.	+	0	transcript_id "Ledus.S5G033400.t1"; gene_id "Ledus.S5G033400"
Ledus.S5	AUGUSTUS	CDS	4043971	4044223	0.98	+	0	transcript_id "Ledus.S5G033400.t1"; gene_id "Ledus.S5G033400"
Ledus.S5	AUGUSTUS	exon	4043971	4044223	.	+	.	transcript_id "Ledus.S5G033400.t1"; gene_id "Ledus.S5G033400"
Ledus.S5	AUGUSTUS	intron	4044224	4044417	.	+	.	transcript_id "Ledus.S5G033400.t1"; gene_id "Ledus.S5G033400"
Ledus.S5	AUGUSTUS	CDS	4044418	4044540	1	+	2	transcript_id "Ledus.S5G033400.t1"; gene_id "Ledus.S5G033400"
Ledus.S5	AUGUSTUS	exon	4044418	4044540	.	+	.	transcript_id "Ledus.S5G033400.t1"; gene_id "Ledus.S5G033400"
Ledus.S5	AUGUSTUS	intron	4044541	4044621	.	+	.	transcript_id "Ledus.S5G033400.t1"; gene_id "Ledus.S5G033400"
Ledus.S5	AUGUSTUS	CDS	4044622	4044782	0.89	+	2	transcript_id "Ledus.S5G033400.t1"; gene_id "Ledus.S5G033400"
Ledus.S5	AUGUSTUS	exon	4044622	4044782	.	+	.	transcript_id "Ledus.S5G033400.t1"; gene_id "Ledus.S5G033400"
Ledus.S5	AUGUSTUS	stop_codon	4044783	4044785	.	+	0	transcript_id "Ledus.S5G033400.t1"; gene_id "Ledus.S5G033400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12991.t1 is derived from g6801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2011893	2013123	.	-	.	Ledus.S6G005300
Ledus.S6	AUGUSTUS	transcript	2011893	2013123	.	-	.	transcript_id "Ledus.S6G005300.t1"; gene_id "Ledus.S6G005300"
Ledus.S6	AUGUSTUS	stop_codon	2011890	2011892	.	-	0	transcript_id "Ledus.S6G005300.t1"; gene_id "Ledus.S6G005300"
Ledus.S6	AUGUSTUS	CDS	2011893	2012106	0.95	-	1	transcript_id "Ledus.S6G005300.t1"; gene_id "Ledus.S6G005300"
Ledus.S6	AUGUSTUS	exon	2011893	2012106	.	-	.	transcript_id "Ledus.S6G005300.t1"; gene_id "Ledus.S6G005300"
Ledus.S6	AUGUSTUS	intron	2012107	2012284	.	-	.	transcript_id "Ledus.S6G005300.t1"; gene_id "Ledus.S6G005300"
Ledus.S6	AUGUSTUS	CDS	2012285	2012382	0.35	-	0	transcript_id "Ledus.S6G005300.t1"; gene_id "Ledus.S6G005300"
Ledus.S6	AUGUSTUS	exon	2012285	2012382	.	-	.	transcript_id "Ledus.S6G005300.t1"; gene_id "Ledus.S6G005300"
Ledus.S6	AUGUSTUS	intron	2012383	2012766	.	-	.	transcript_id "Ledus.S6G005300.t1"; gene_id "Ledus.S6G005300"
Ledus.S6	AUGUSTUS	CDS	2012767	2013123	0.39	-	0	transcript_id "Ledus.S6G005300.t1"; gene_id "Ledus.S6G005300"
Ledus.S6	AUGUSTUS	exon	2012767	2013123	.	-	.	transcript_id "Ledus.S6G005300.t1"; gene_id "Ledus.S6G005300"
Ledus.S6	AUGUSTUS	start_codon	2013121	2013123	.	-	0	transcript_id "Ledus.S6G005300.t1"; gene_id "Ledus.S6G005300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8508.t1 is derived from g13180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12356020	12356871	.	-	.	Ledus.S5G128600
Ledus.S5	AUGUSTUS	transcript	12356020	12356871	.	-	.	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	stop_codon	12356017	12356019	.	-	0	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	CDS	12356020	12356109	0.88	-	0	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	exon	12356020	12356109	.	-	.	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	intron	12356110	12356221	.	-	.	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	CDS	12356222	12356318	0.88	-	1	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	exon	12356222	12356318	.	-	.	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	intron	12356319	12356410	.	-	.	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	CDS	12356411	12356537	0.42	-	2	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	exon	12356411	12356537	.	-	.	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	intron	12356538	12356783	.	-	.	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	CDS	12356784	12356871	0.22	-	0	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	exon	12356784	12356871	.	-	.	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
Ledus.S5	AUGUSTUS	start_codon	12356869	12356871	.	-	0	transcript_id "Ledus.S5G128600.t1"; gene_id "Ledus.S5G128600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9951.t1 is derived from g10981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11439111	11439677	.	-	.	Ledus.S3G142800
Ledus.S3	AUGUSTUS	transcript	11439111	11439677	.	-	.	transcript_id "Ledus.S3G142800.t1"; gene_id "Ledus.S3G142800"
Ledus.S3	AUGUSTUS	stop_codon	11439108	11439110	.	-	0	transcript_id "Ledus.S3G142800.t1"; gene_id "Ledus.S3G142800"
Ledus.S3	AUGUSTUS	CDS	11439111	11439677	0.98	-	0	transcript_id "Ledus.S3G142800.t1"; gene_id "Ledus.S3G142800"
Ledus.S3	AUGUSTUS	exon	11439111	11439677	.	-	.	transcript_id "Ledus.S3G142800.t1"; gene_id "Ledus.S3G142800"
Ledus.S3	AUGUSTUS	start_codon	11439675	11439677	.	-	0	transcript_id "Ledus.S3G142800.t1"; gene_id "Ledus.S3G142800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2305.t1 is derived from g9168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17107419	17108376	.	+	.	Ledus.S2G218700
Ledus.S2	AUGUSTUS	transcript	17107419	17108376	.	+	.	transcript_id "Ledus.S2G218700.t1"; gene_id "Ledus.S2G218700"
Ledus.S2	AUGUSTUS	start_codon	17107419	17107421	.	+	0	transcript_id "Ledus.S2G218700.t1"; gene_id "Ledus.S2G218700"
Ledus.S2	AUGUSTUS	CDS	17107419	17107791	1	+	0	transcript_id "Ledus.S2G218700.t1"; gene_id "Ledus.S2G218700"
Ledus.S2	AUGUSTUS	exon	17107419	17107791	.	+	.	transcript_id "Ledus.S2G218700.t1"; gene_id "Ledus.S2G218700"
Ledus.S2	AUGUSTUS	intron	17107792	17107870	.	+	.	transcript_id "Ledus.S2G218700.t1"; gene_id "Ledus.S2G218700"
Ledus.S2	AUGUSTUS	CDS	17107871	17108376	1	+	2	transcript_id "Ledus.S2G218700.t1"; gene_id "Ledus.S2G218700"
Ledus.S2	AUGUSTUS	exon	17107871	17108376	.	+	.	transcript_id "Ledus.S2G218700.t1"; gene_id "Ledus.S2G218700"
Ledus.S2	AUGUSTUS	stop_codon	17108377	17108379	.	+	0	transcript_id "Ledus.S2G218700.t1"; gene_id "Ledus.S2G218700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1868.t1 is derived from g8731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13010458	13012493	.	+	.	Ledus.S2G175000
Ledus.S2	AUGUSTUS	transcript	13010458	13012493	.	+	.	transcript_id "Ledus.S2G175000.t1"; gene_id "Ledus.S2G175000"
Ledus.S2	AUGUSTUS	start_codon	13010458	13010460	.	+	0	transcript_id "Ledus.S2G175000.t1"; gene_id "Ledus.S2G175000"
Ledus.S2	AUGUSTUS	CDS	13010458	13010930	0.98	+	0	transcript_id "Ledus.S2G175000.t1"; gene_id "Ledus.S2G175000"
Ledus.S2	AUGUSTUS	exon	13010458	13010930	.	+	.	transcript_id "Ledus.S2G175000.t1"; gene_id "Ledus.S2G175000"
Ledus.S2	AUGUSTUS	intron	13010931	13011025	.	+	.	transcript_id "Ledus.S2G175000.t1"; gene_id "Ledus.S2G175000"
Ledus.S2	AUGUSTUS	CDS	13011026	13012493	1	+	1	transcript_id "Ledus.S2G175000.t1"; gene_id "Ledus.S2G175000"
Ledus.S2	AUGUSTUS	exon	13011026	13012493	.	+	.	transcript_id "Ledus.S2G175000.t1"; gene_id "Ledus.S2G175000"
Ledus.S2	AUGUSTUS	stop_codon	13012494	13012496	.	+	0	transcript_id "Ledus.S2G175000.t1"; gene_id "Ledus.S2G175000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg457.t1 is derived from g7318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2676588	2680560	.	+	.	Ledus.S2G033900
Ledus.S2	AUGUSTUS	transcript	2676588	2680560	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	start_codon	2676588	2676590	.	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2676588	2676896	0.59	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2676588	2676896	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2676897	2677192	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2677193	2677371	1	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2677193	2677371	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2677372	2677546	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2677547	2677631	1	+	1	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2677547	2677631	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2677632	2677713	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2677714	2678030	1	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2677714	2678030	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2678031	2678181	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2678182	2678305	1	+	1	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2678182	2678305	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2678306	2678412	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2678413	2678505	0.9	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2678413	2678505	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2678506	2678612	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2678613	2678708	1	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2678613	2678708	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2678709	2678793	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2678794	2678925	1	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2678794	2678925	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2678926	2679000	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2679001	2679204	1	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2679001	2679204	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2679205	2679293	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2679294	2679455	1	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2679294	2679455	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2679456	2679538	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2679539	2679646	1	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2679539	2679646	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2679647	2679744	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2679745	2679879	1	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2679745	2679879	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2679880	2679998	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2679999	2680160	1	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2679999	2680160	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2680161	2680256	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2680257	2680377	1	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2680257	2680377	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	intron	2680378	2680477	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	CDS	2680478	2680560	1	+	2	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	exon	2680478	2680560	.	+	.	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
Ledus.S2	AUGUSTUS	stop_codon	2680561	2680563	.	+	0	transcript_id "Ledus.S2G033900.t1"; gene_id "Ledus.S2G033900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6250.t1 is derived from g3693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29902652	29903174	.	-	.	Ledus.S1G367100
Ledus.S1	AUGUSTUS	transcript	29902652	29903174	.	-	.	transcript_id "Ledus.S1G367100.t1"; gene_id "Ledus.S1G367100"
Ledus.S1	AUGUSTUS	stop_codon	29902649	29902651	.	-	0	transcript_id "Ledus.S1G367100.t1"; gene_id "Ledus.S1G367100"
Ledus.S1	AUGUSTUS	CDS	29902652	29902832	0.99	-	1	transcript_id "Ledus.S1G367100.t1"; gene_id "Ledus.S1G367100"
Ledus.S1	AUGUSTUS	exon	29902652	29902832	.	-	.	transcript_id "Ledus.S1G367100.t1"; gene_id "Ledus.S1G367100"
Ledus.S1	AUGUSTUS	intron	29902833	29903031	.	-	.	transcript_id "Ledus.S1G367100.t1"; gene_id "Ledus.S1G367100"
Ledus.S1	AUGUSTUS	CDS	29903032	29903174	0.7	-	0	transcript_id "Ledus.S1G367100.t1"; gene_id "Ledus.S1G367100"
Ledus.S1	AUGUSTUS	exon	29903032	29903174	.	-	.	transcript_id "Ledus.S1G367100.t1"; gene_id "Ledus.S1G367100"
Ledus.S1	AUGUSTUS	start_codon	29903172	29903174	.	-	0	transcript_id "Ledus.S1G367100.t1"; gene_id "Ledus.S1G367100"
# This transcript jg10727.t2 is derived from g11757.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10728.t1 is derived from g11758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17393861	17397128	.	-	.	Ledus.S3G220500
Ledus.S3	AUGUSTUS	transcript	17393861	17397128	.	-	.	transcript_id "Ledus.S3G220500.t1"; gene_id "Ledus.S3G220500"
Ledus.S3	AUGUSTUS	stop_codon	17393858	17393860	.	-	0	transcript_id "Ledus.S3G220500.t1"; gene_id "Ledus.S3G220500"
Ledus.S3	AUGUSTUS	CDS	17393861	17395650	1	-	2	transcript_id "Ledus.S3G220500.t1"; gene_id "Ledus.S3G220500"
Ledus.S3	AUGUSTUS	exon	17393861	17395650	.	-	.	transcript_id "Ledus.S3G220500.t1"; gene_id "Ledus.S3G220500"
Ledus.S3	AUGUSTUS	intron	17395651	17396899	.	-	.	transcript_id "Ledus.S3G220500.t1"; gene_id "Ledus.S3G220500"
Ledus.S3	AUGUSTUS	CDS	17396900	17397128	0.59	-	0	transcript_id "Ledus.S3G220500.t1"; gene_id "Ledus.S3G220500"
Ledus.S3	AUGUSTUS	exon	17396900	17397128	.	-	.	transcript_id "Ledus.S3G220500.t1"; gene_id "Ledus.S3G220500"
Ledus.S3	AUGUSTUS	start_codon	17397126	17397128	.	-	0	transcript_id "Ledus.S3G220500.t1"; gene_id "Ledus.S3G220500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1923.t1 is derived from g8786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13445413	13446966	.	+	.	Ledus.S2G180500
Ledus.S2	AUGUSTUS	transcript	13445413	13446966	.	+	.	transcript_id "Ledus.S2G180500.t1"; gene_id "Ledus.S2G180500"
Ledus.S2	AUGUSTUS	start_codon	13445413	13445415	.	+	0	transcript_id "Ledus.S2G180500.t1"; gene_id "Ledus.S2G180500"
Ledus.S2	AUGUSTUS	CDS	13445413	13446966	0.49	+	0	transcript_id "Ledus.S2G180500.t1"; gene_id "Ledus.S2G180500"
Ledus.S2	AUGUSTUS	exon	13445413	13446966	.	+	.	transcript_id "Ledus.S2G180500.t1"; gene_id "Ledus.S2G180500"
Ledus.S2	AUGUSTUS	stop_codon	13446967	13446969	.	+	0	transcript_id "Ledus.S2G180500.t1"; gene_id "Ledus.S2G180500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11869.t1 is derived from g5488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7445046	7446446	.	+	.	Ledus.S4G102500
Ledus.S4	AUGUSTUS	transcript	7445046	7446446	.	+	.	transcript_id "Ledus.S4G102500.t1"; gene_id "Ledus.S4G102500"
Ledus.S4	AUGUSTUS	start_codon	7445046	7445048	.	+	0	transcript_id "Ledus.S4G102500.t1"; gene_id "Ledus.S4G102500"
Ledus.S4	AUGUSTUS	CDS	7445046	7446446	0.5	+	0	transcript_id "Ledus.S4G102500.t1"; gene_id "Ledus.S4G102500"
Ledus.S4	AUGUSTUS	exon	7445046	7446446	.	+	.	transcript_id "Ledus.S4G102500.t1"; gene_id "Ledus.S4G102500"
Ledus.S4	AUGUSTUS	stop_codon	7446447	7446449	.	+	0	transcript_id "Ledus.S4G102500.t1"; gene_id "Ledus.S4G102500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8329.t1 is derived from g13001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10777938	10781466	.	-	.	Ledus.S5G110700
Ledus.S5	AUGUSTUS	transcript	10777938	10781466	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	stop_codon	10777935	10777937	.	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10777938	10778073	0.93	-	1	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10777938	10778073	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10778074	10778167	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10778168	10778247	1	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10778168	10778247	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10778248	10778345	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10778346	10778456	1	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10778346	10778456	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10778457	10778568	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10778569	10778778	1	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10778569	10778778	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10778779	10778856	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10778857	10778946	1	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10778857	10778946	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10778947	10779025	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10779026	10779115	1	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10779026	10779115	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10779116	10779196	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10779197	10779328	1	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10779197	10779328	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10779329	10779409	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10779410	10779523	1	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10779410	10779523	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10779524	10779659	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10779660	10779764	1	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10779660	10779764	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10779765	10779907	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10779908	10779991	1	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10779908	10779991	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10779992	10780105	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10780106	10780219	0.99	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10780106	10780219	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10780220	10780352	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10780353	10780410	1	-	1	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10780353	10780410	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10780411	10780499	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10780500	10780567	0.98	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10780500	10780567	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10780568	10780668	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10780669	10780772	0.97	-	2	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10780669	10780772	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10780773	10780872	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10780873	10780952	1	-	1	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10780873	10780952	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10780953	10781063	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10781064	10781199	0.91	-	2	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10781064	10781199	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	intron	10781200	10781372	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	CDS	10781373	10781466	0.39	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	exon	10781373	10781466	.	-	.	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
Ledus.S5	AUGUSTUS	start_codon	10781464	10781466	.	-	0	transcript_id "Ledus.S5G110700.t1"; gene_id "Ledus.S5G110700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12925.t1 is derived from g4417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	357312	358150	.	-	.	Ledus.C9G003300
Ledus.C9	AUGUSTUS	transcript	357312	358150	.	-	.	transcript_id "Ledus.C9G003300.t1"; gene_id "Ledus.C9G003300"
Ledus.C9	AUGUSTUS	stop_codon	357309	357311	.	-	0	transcript_id "Ledus.C9G003300.t1"; gene_id "Ledus.C9G003300"
Ledus.C9	AUGUSTUS	CDS	357312	357637	0.93	-	2	transcript_id "Ledus.C9G003300.t1"; gene_id "Ledus.C9G003300"
Ledus.C9	AUGUSTUS	exon	357312	357637	.	-	.	transcript_id "Ledus.C9G003300.t1"; gene_id "Ledus.C9G003300"
Ledus.C9	AUGUSTUS	intron	357638	357742	.	-	.	transcript_id "Ledus.C9G003300.t1"; gene_id "Ledus.C9G003300"
Ledus.C9	AUGUSTUS	CDS	357743	357932	0.79	-	0	transcript_id "Ledus.C9G003300.t1"; gene_id "Ledus.C9G003300"
Ledus.C9	AUGUSTUS	exon	357743	357932	.	-	.	transcript_id "Ledus.C9G003300.t1"; gene_id "Ledus.C9G003300"
Ledus.C9	AUGUSTUS	intron	357933	358033	.	-	.	transcript_id "Ledus.C9G003300.t1"; gene_id "Ledus.C9G003300"
Ledus.C9	AUGUSTUS	CDS	358034	358150	0.95	-	0	transcript_id "Ledus.C9G003300.t1"; gene_id "Ledus.C9G003300"
Ledus.C9	AUGUSTUS	exon	358034	358150	.	-	.	transcript_id "Ledus.C9G003300.t1"; gene_id "Ledus.C9G003300"
Ledus.C9	AUGUSTUS	start_codon	358148	358150	.	-	0	transcript_id "Ledus.C9G003300.t1"; gene_id "Ledus.C9G003300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12134.t1 is derived from g5753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9761022	9764282	.	+	.	Ledus.S4G129000
Ledus.S4	AUGUSTUS	transcript	9761022	9764282	.	+	.	transcript_id "Ledus.S4G129000.t1"; gene_id "Ledus.S4G129000"
Ledus.S4	AUGUSTUS	start_codon	9761022	9761024	.	+	0	transcript_id "Ledus.S4G129000.t1"; gene_id "Ledus.S4G129000"
Ledus.S4	AUGUSTUS	CDS	9761022	9764282	0.97	+	0	transcript_id "Ledus.S4G129000.t1"; gene_id "Ledus.S4G129000"
Ledus.S4	AUGUSTUS	exon	9761022	9764282	.	+	.	transcript_id "Ledus.S4G129000.t1"; gene_id "Ledus.S4G129000"
Ledus.S4	AUGUSTUS	stop_codon	9764283	9764285	.	+	0	transcript_id "Ledus.S4G129000.t1"; gene_id "Ledus.S4G129000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9649.t1 is derived from g10679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8739204	8739740	.	-	.	Ledus.S3G112600
Ledus.S3	AUGUSTUS	transcript	8739204	8739740	.	-	.	transcript_id "Ledus.S3G112600.t1"; gene_id "Ledus.S3G112600"
Ledus.S3	AUGUSTUS	stop_codon	8739201	8739203	.	-	0	transcript_id "Ledus.S3G112600.t1"; gene_id "Ledus.S3G112600"
Ledus.S3	AUGUSTUS	CDS	8739204	8739740	0.73	-	0	transcript_id "Ledus.S3G112600.t1"; gene_id "Ledus.S3G112600"
Ledus.S3	AUGUSTUS	exon	8739204	8739740	.	-	.	transcript_id "Ledus.S3G112600.t1"; gene_id "Ledus.S3G112600"
Ledus.S3	AUGUSTUS	start_codon	8739738	8739740	.	-	0	transcript_id "Ledus.S3G112600.t1"; gene_id "Ledus.S3G112600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8182.t1 is derived from g12853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9709941	9711499	.	-	.	Ledus.S5G096000
Ledus.S5	AUGUSTUS	transcript	9709941	9711499	.	-	.	transcript_id "Ledus.S5G096000.t1"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	stop_codon	9709938	9709940	.	-	0	transcript_id "Ledus.S5G096000.t1"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	CDS	9709941	9710127	1	-	1	transcript_id "Ledus.S5G096000.t1"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	exon	9709941	9710127	.	-	.	transcript_id "Ledus.S5G096000.t1"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	intron	9710128	9710204	.	-	.	transcript_id "Ledus.S5G096000.t1"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	CDS	9710205	9711088	0.93	-	0	transcript_id "Ledus.S5G096000.t1"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	exon	9710205	9711088	.	-	.	transcript_id "Ledus.S5G096000.t1"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	intron	9711089	9711481	.	-	.	transcript_id "Ledus.S5G096000.t1"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	CDS	9711482	9711499	0.9	-	0	transcript_id "Ledus.S5G096000.t1"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	exon	9711482	9711499	.	-	.	transcript_id "Ledus.S5G096000.t1"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	start_codon	9711497	9711499	.	-	0	transcript_id "Ledus.S5G096000.t1"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	transcript	9709941	9711079	.	-	.	transcript_id "Ledus.S5G096000.t2"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	stop_codon	9709938	9709940	.	-	0	transcript_id "Ledus.S5G096000.t2"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	CDS	9709941	9710127	1	-	1	transcript_id "Ledus.S5G096000.t2"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	exon	9709941	9710127	.	-	.	transcript_id "Ledus.S5G096000.t2"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	intron	9710128	9710204	.	-	.	transcript_id "Ledus.S5G096000.t2"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	CDS	9710205	9711079	0.73	-	0	transcript_id "Ledus.S5G096000.t2"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	exon	9710205	9711079	.	-	.	transcript_id "Ledus.S5G096000.t2"; gene_id "Ledus.S5G096000"
Ledus.S5	AUGUSTUS	start_codon	9711077	9711079	.	-	0	transcript_id "Ledus.S5G096000.t2"; gene_id "Ledus.S5G096000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11783.t1 is derived from g5402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6752496	6753725	.	+	.	Ledus.S4G093900
Ledus.S4	AUGUSTUS	transcript	6752496	6753725	.	+	.	transcript_id "Ledus.S4G093900.t1"; gene_id "Ledus.S4G093900"
Ledus.S4	AUGUSTUS	start_codon	6752496	6752498	.	+	0	transcript_id "Ledus.S4G093900.t1"; gene_id "Ledus.S4G093900"
Ledus.S4	AUGUSTUS	CDS	6752496	6753533	0.78	+	0	transcript_id "Ledus.S4G093900.t1"; gene_id "Ledus.S4G093900"
Ledus.S4	AUGUSTUS	exon	6752496	6753533	.	+	.	transcript_id "Ledus.S4G093900.t1"; gene_id "Ledus.S4G093900"
Ledus.S4	AUGUSTUS	intron	6753534	6753608	.	+	.	transcript_id "Ledus.S4G093900.t1"; gene_id "Ledus.S4G093900"
Ledus.S4	AUGUSTUS	CDS	6753609	6753725	1	+	0	transcript_id "Ledus.S4G093900.t1"; gene_id "Ledus.S4G093900"
Ledus.S4	AUGUSTUS	exon	6753609	6753725	.	+	.	transcript_id "Ledus.S4G093900.t1"; gene_id "Ledus.S4G093900"
Ledus.S4	AUGUSTUS	stop_codon	6753726	6753728	.	+	0	transcript_id "Ledus.S4G093900.t1"; gene_id "Ledus.S4G093900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10099.t1 is derived from g11129.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12615984	12618243	.	+	.	Ledus.S3G157600
Ledus.S3	AUGUSTUS	transcript	12615984	12618243	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	start_codon	12615984	12615986	.	+	0	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12615984	12616293	1	+	0	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12615984	12616293	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	intron	12616294	12616559	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12616560	12616574	1	+	2	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12616560	12616574	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	intron	12616575	12616935	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12616936	12616999	1	+	2	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12616936	12616999	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	intron	12617000	12617252	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12617253	12617359	1	+	1	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12617253	12617359	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	intron	12617360	12617607	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12617608	12617657	1	+	2	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12617608	12617657	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	intron	12617658	12617924	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12617925	12618007	1	+	0	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12617925	12618007	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	intron	12618008	12618131	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12618132	12618243	1	+	1	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12618132	12618243	.	+	.	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	stop_codon	12618244	12618246	.	+	0	transcript_id "Ledus.S3G157600.t1"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	transcript	12615984	12618243	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	start_codon	12615984	12615986	.	+	0	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12615984	12616293	0.85	+	0	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12615984	12616293	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	intron	12616294	12616612	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12616613	12616632	0.68	+	2	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12616613	12616632	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	intron	12616633	12616949	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12616950	12616999	0.67	+	0	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12616950	12616999	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	intron	12617000	12617252	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12617253	12617359	1	+	1	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12617253	12617359	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	intron	12617360	12617607	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12617608	12617657	1	+	2	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12617608	12617657	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	intron	12617658	12617924	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12617925	12618007	1	+	0	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12617925	12618007	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	intron	12618008	12618131	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	CDS	12618132	12618243	1	+	1	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	exon	12618132	12618243	.	+	.	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
Ledus.S3	AUGUSTUS	stop_codon	12618244	12618246	.	+	0	transcript_id "Ledus.S3G157600.t2"; gene_id "Ledus.S3G157600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8010.t1 is derived from g12681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8473790	8474816	.	-	.	Ledus.S5G078800
Ledus.S5	AUGUSTUS	transcript	8473790	8474816	.	-	.	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	stop_codon	8473787	8473789	.	-	0	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	CDS	8473790	8473906	1	-	0	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	exon	8473790	8473906	.	-	.	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	intron	8473907	8473998	.	-	.	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	CDS	8473999	8474055	1	-	0	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	exon	8473999	8474055	.	-	.	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	intron	8474056	8474138	.	-	.	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	CDS	8474139	8474264	1	-	0	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	exon	8474139	8474264	.	-	.	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	intron	8474265	8474354	.	-	.	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	CDS	8474355	8474401	1	-	2	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	exon	8474355	8474401	.	-	.	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	intron	8474402	8474497	.	-	.	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	CDS	8474498	8474816	0.97	-	0	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	exon	8474498	8474816	.	-	.	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
Ledus.S5	AUGUSTUS	start_codon	8474814	8474816	.	-	0	transcript_id "Ledus.S5G078800.t1"; gene_id "Ledus.S5G078800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7630.t1 is derived from g12301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4548404	4551615	.	-	.	Ledus.S5G040800
Ledus.S5	AUGUSTUS	transcript	4548404	4551615	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	stop_codon	4548401	4548403	.	-	0	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	CDS	4548404	4548590	1	-	1	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	exon	4548404	4548590	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	intron	4548591	4548714	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	CDS	4548715	4548761	1	-	0	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	exon	4548715	4548761	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	intron	4548762	4548918	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	CDS	4548919	4549098	1	-	0	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	exon	4548919	4549098	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	intron	4549099	4549236	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	CDS	4549237	4549353	1	-	0	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	exon	4549237	4549353	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	intron	4549354	4549519	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	CDS	4549520	4549693	1	-	0	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	exon	4549520	4549693	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	intron	4549694	4549784	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	CDS	4549785	4550035	1	-	2	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	exon	4549785	4550035	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	intron	4550036	4550188	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	CDS	4550189	4550602	0.83	-	2	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	exon	4550189	4550602	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	intron	4550603	4550736	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	CDS	4550737	4551316	0.97	-	0	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	exon	4550737	4551316	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	intron	4551317	4551576	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	CDS	4551577	4551615	0.97	-	0	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	exon	4551577	4551615	.	-	.	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
Ledus.S5	AUGUSTUS	start_codon	4551613	4551615	.	-	0	transcript_id "Ledus.S5G040800.t1"; gene_id "Ledus.S5G040800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg545.t1 is derived from g7406.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3149999	3151585	.	-	.	Ledus.S2G042700
Ledus.S2	AUGUSTUS	transcript	3149999	3151585	.	-	.	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	stop_codon	3149996	3149998	.	-	0	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	CDS	3149999	3150256	0.8	-	0	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	exon	3149999	3150256	.	-	.	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	intron	3150257	3150357	.	-	.	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	CDS	3150358	3150468	0.99	-	0	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	exon	3150358	3150468	.	-	.	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	intron	3150469	3150550	.	-	.	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	CDS	3150551	3150760	1	-	0	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	exon	3150551	3150760	.	-	.	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	intron	3150761	3150862	.	-	.	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	CDS	3150863	3150996	0.99	-	2	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	exon	3150863	3150996	.	-	.	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	intron	3150997	3151185	.	-	.	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	CDS	3151186	3151345	1	-	0	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	exon	3151186	3151345	.	-	.	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	intron	3151346	3151417	.	-	.	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	CDS	3151418	3151585	0.64	-	0	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	exon	3151418	3151585	.	-	.	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
Ledus.S2	AUGUSTUS	start_codon	3151583	3151585	.	-	0	transcript_id "Ledus.S2G042700.t1"; gene_id "Ledus.S2G042700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10948.t1 is derived from g4566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	779658	779951	.	-	.	Ledus.S4G010400
Ledus.S4	AUGUSTUS	transcript	779658	779951	.	-	.	transcript_id "Ledus.S4G010400.t1"; gene_id "Ledus.S4G010400"
Ledus.S4	AUGUSTUS	stop_codon	779655	779657	.	-	0	transcript_id "Ledus.S4G010400.t1"; gene_id "Ledus.S4G010400"
Ledus.S4	AUGUSTUS	CDS	779658	779951	0.71	-	0	transcript_id "Ledus.S4G010400.t1"; gene_id "Ledus.S4G010400"
Ledus.S4	AUGUSTUS	exon	779658	779951	.	-	.	transcript_id "Ledus.S4G010400.t1"; gene_id "Ledus.S4G010400"
Ledus.S4	AUGUSTUS	start_codon	779949	779951	.	-	0	transcript_id "Ledus.S4G010400.t1"; gene_id "Ledus.S4G010400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1394.t1 is derived from g8255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9765602	9766182	.	+	.	Ledus.S2G127600
Ledus.S2	AUGUSTUS	transcript	9765602	9766182	.	+	.	transcript_id "Ledus.S2G127600.t1"; gene_id "Ledus.S2G127600"
Ledus.S2	AUGUSTUS	start_codon	9765602	9765604	.	+	0	transcript_id "Ledus.S2G127600.t1"; gene_id "Ledus.S2G127600"
Ledus.S2	AUGUSTUS	CDS	9765602	9765704	0.62	+	0	transcript_id "Ledus.S2G127600.t1"; gene_id "Ledus.S2G127600"
Ledus.S2	AUGUSTUS	exon	9765602	9765704	.	+	.	transcript_id "Ledus.S2G127600.t1"; gene_id "Ledus.S2G127600"
Ledus.S2	AUGUSTUS	intron	9765705	9765924	.	+	.	transcript_id "Ledus.S2G127600.t1"; gene_id "Ledus.S2G127600"
Ledus.S2	AUGUSTUS	CDS	9765925	9765996	0.7	+	2	transcript_id "Ledus.S2G127600.t1"; gene_id "Ledus.S2G127600"
Ledus.S2	AUGUSTUS	exon	9765925	9765996	.	+	.	transcript_id "Ledus.S2G127600.t1"; gene_id "Ledus.S2G127600"
Ledus.S2	AUGUSTUS	intron	9765997	9766084	.	+	.	transcript_id "Ledus.S2G127600.t1"; gene_id "Ledus.S2G127600"
Ledus.S2	AUGUSTUS	CDS	9766085	9766182	0.71	+	2	transcript_id "Ledus.S2G127600.t1"; gene_id "Ledus.S2G127600"
Ledus.S2	AUGUSTUS	exon	9766085	9766182	.	+	.	transcript_id "Ledus.S2G127600.t1"; gene_id "Ledus.S2G127600"
Ledus.S2	AUGUSTUS	stop_codon	9766183	9766185	.	+	0	transcript_id "Ledus.S2G127600.t1"; gene_id "Ledus.S2G127600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1443.t1 is derived from g8304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10156438	10157231	.	-	.	Ledus.S2G132500
Ledus.S2	AUGUSTUS	transcript	10156438	10157231	.	-	.	transcript_id "Ledus.S2G132500.t1"; gene_id "Ledus.S2G132500"
Ledus.S2	AUGUSTUS	stop_codon	10156435	10156437	.	-	0	transcript_id "Ledus.S2G132500.t1"; gene_id "Ledus.S2G132500"
Ledus.S2	AUGUSTUS	CDS	10156438	10156925	0.78	-	2	transcript_id "Ledus.S2G132500.t1"; gene_id "Ledus.S2G132500"
Ledus.S2	AUGUSTUS	exon	10156438	10156925	.	-	.	transcript_id "Ledus.S2G132500.t1"; gene_id "Ledus.S2G132500"
Ledus.S2	AUGUSTUS	intron	10156926	10156987	.	-	.	transcript_id "Ledus.S2G132500.t1"; gene_id "Ledus.S2G132500"
Ledus.S2	AUGUSTUS	CDS	10156988	10157231	0.88	-	0	transcript_id "Ledus.S2G132500.t1"; gene_id "Ledus.S2G132500"
Ledus.S2	AUGUSTUS	exon	10156988	10157231	.	-	.	transcript_id "Ledus.S2G132500.t1"; gene_id "Ledus.S2G132500"
Ledus.S2	AUGUSTUS	start_codon	10157229	10157231	.	-	0	transcript_id "Ledus.S2G132500.t1"; gene_id "Ledus.S2G132500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1268.t1 is derived from g8129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8998115	8999118	.	-	.	Ledus.S2G115000
Ledus.S2	AUGUSTUS	transcript	8998115	8999118	.	-	.	transcript_id "Ledus.S2G115000.t1"; gene_id "Ledus.S2G115000"
Ledus.S2	AUGUSTUS	stop_codon	8998112	8998114	.	-	0	transcript_id "Ledus.S2G115000.t1"; gene_id "Ledus.S2G115000"
Ledus.S2	AUGUSTUS	CDS	8998115	8998610	1	-	1	transcript_id "Ledus.S2G115000.t1"; gene_id "Ledus.S2G115000"
Ledus.S2	AUGUSTUS	exon	8998115	8998610	.	-	.	transcript_id "Ledus.S2G115000.t1"; gene_id "Ledus.S2G115000"
Ledus.S2	AUGUSTUS	intron	8998611	8998678	.	-	.	transcript_id "Ledus.S2G115000.t1"; gene_id "Ledus.S2G115000"
Ledus.S2	AUGUSTUS	CDS	8998679	8999118	0.89	-	0	transcript_id "Ledus.S2G115000.t1"; gene_id "Ledus.S2G115000"
Ledus.S2	AUGUSTUS	exon	8998679	8999118	.	-	.	transcript_id "Ledus.S2G115000.t1"; gene_id "Ledus.S2G115000"
Ledus.S2	AUGUSTUS	start_codon	8999116	8999118	.	-	0	transcript_id "Ledus.S2G115000.t1"; gene_id "Ledus.S2G115000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9588.t1 is derived from g10618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8109637	8110101	.	+	.	Ledus.S3G106500
Ledus.S3	AUGUSTUS	transcript	8109637	8110101	.	+	.	transcript_id "Ledus.S3G106500.t1"; gene_id "Ledus.S3G106500"
Ledus.S3	AUGUSTUS	start_codon	8109637	8109639	.	+	0	transcript_id "Ledus.S3G106500.t1"; gene_id "Ledus.S3G106500"
Ledus.S3	AUGUSTUS	CDS	8109637	8110101	0.73	+	0	transcript_id "Ledus.S3G106500.t1"; gene_id "Ledus.S3G106500"
Ledus.S3	AUGUSTUS	exon	8109637	8110101	.	+	.	transcript_id "Ledus.S3G106500.t1"; gene_id "Ledus.S3G106500"
Ledus.S3	AUGUSTUS	stop_codon	8110102	8110104	.	+	0	transcript_id "Ledus.S3G106500.t1"; gene_id "Ledus.S3G106500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11542.t1 is derived from g5160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5193138	5194829	.	+	.	Ledus.S4G069800
Ledus.S4	AUGUSTUS	transcript	5193138	5194829	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	start_codon	5193138	5193140	.	+	0	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	CDS	5193138	5193241	0.95	+	0	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	exon	5193138	5193241	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	intron	5193242	5193314	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	CDS	5193315	5193341	0.98	+	1	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	exon	5193315	5193341	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	intron	5193342	5193428	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	CDS	5193429	5193927	1	+	1	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	exon	5193429	5193927	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	intron	5193928	5194014	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	CDS	5194015	5194182	1	+	0	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	exon	5194015	5194182	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	intron	5194183	5194270	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	CDS	5194271	5194462	1	+	0	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	exon	5194271	5194462	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	intron	5194463	5194600	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	CDS	5194601	5194669	1	+	0	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	exon	5194601	5194669	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	intron	5194670	5194748	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	CDS	5194749	5194829	1	+	0	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	exon	5194749	5194829	.	+	.	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
Ledus.S4	AUGUSTUS	stop_codon	5194830	5194832	.	+	0	transcript_id "Ledus.S4G069800.t1"; gene_id "Ledus.S4G069800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11306.t1 is derived from g4924.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3478638	3482330	.	+	.	Ledus.S4G046200
Ledus.S4	AUGUSTUS	transcript	3478638	3482330	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	start_codon	3478638	3478640	.	+	0	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3478638	3478719	1	+	0	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3478638	3478719	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3478720	3478797	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3478798	3478970	1	+	2	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3478798	3478970	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3478971	3479109	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3479110	3479283	1	+	0	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3479110	3479283	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3479284	3479388	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3479389	3479512	1	+	0	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3479389	3479512	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3479513	3479592	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3479593	3479693	0.99	+	2	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3479593	3479693	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3479694	3479817	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3479818	3479904	0.94	+	0	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3479818	3479904	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3479905	3480016	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3480017	3480112	0.95	+	0	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3480017	3480112	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3480113	3480314	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3480315	3480435	1	+	0	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3480315	3480435	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3480436	3480608	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3480609	3480737	1	+	2	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3480609	3480737	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3480738	3480869	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3480870	3480961	1	+	2	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3480870	3480961	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3480962	3481082	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3481083	3481194	1	+	0	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3481083	3481194	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3481195	3481297	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3481298	3482093	1	+	2	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3481298	3482093	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3482094	3482191	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3482192	3482330	0.38	+	1	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3482192	3482330	.	+	.	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	stop_codon	3482331	3482333	.	+	0	transcript_id "Ledus.S4G046200.t1"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	transcript	3478638	3482330	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	start_codon	3478638	3478640	.	+	0	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3478638	3478719	1	+	0	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3478638	3478719	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3478720	3478797	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3478798	3478970	1	+	2	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3478798	3478970	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3478971	3479109	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3479110	3479283	1	+	0	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3479110	3479283	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3479284	3479388	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3479389	3479434	0.85	+	0	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3479389	3479434	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3479435	3479592	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3479593	3479693	0.97	+	2	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3479593	3479693	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3479694	3479817	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3479818	3479904	0.98	+	0	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3479818	3479904	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3479905	3480016	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3480017	3480112	0.98	+	0	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3480017	3480112	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3480113	3480314	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3480315	3480435	1	+	0	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3480315	3480435	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3480436	3480608	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3480609	3480737	1	+	2	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3480609	3480737	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3480738	3480869	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3480870	3480961	1	+	2	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3480870	3480961	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3480962	3481082	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3481083	3481194	1	+	0	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3481083	3481194	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3481195	3481297	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3481298	3482093	0.98	+	2	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3481298	3482093	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	intron	3482094	3482191	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	CDS	3482192	3482330	0.34	+	1	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	exon	3482192	3482330	.	+	.	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
Ledus.S4	AUGUSTUS	stop_codon	3482331	3482333	.	+	0	transcript_id "Ledus.S4G046200.t2"; gene_id "Ledus.S4G046200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12126.t1 is derived from g5745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9657954	9658586	.	+	.	Ledus.S4G128200
Ledus.S4	AUGUSTUS	transcript	9657954	9658586	.	+	.	transcript_id "Ledus.S4G128200.t1"; gene_id "Ledus.S4G128200"
Ledus.S4	AUGUSTUS	start_codon	9657954	9657956	.	+	0	transcript_id "Ledus.S4G128200.t1"; gene_id "Ledus.S4G128200"
Ledus.S4	AUGUSTUS	CDS	9657954	9658586	0.76	+	0	transcript_id "Ledus.S4G128200.t1"; gene_id "Ledus.S4G128200"
Ledus.S4	AUGUSTUS	exon	9657954	9658586	.	+	.	transcript_id "Ledus.S4G128200.t1"; gene_id "Ledus.S4G128200"
Ledus.S4	AUGUSTUS	stop_codon	9658587	9658589	.	+	0	transcript_id "Ledus.S4G128200.t1"; gene_id "Ledus.S4G128200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3526.t1 is derived from g962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9110987	9111232	.	+	.	Ledus.S1G094700
Ledus.S1	AUGUSTUS	transcript	9110987	9111232	.	+	.	transcript_id "Ledus.S1G094700.t1"; gene_id "Ledus.S1G094700"
Ledus.S1	AUGUSTUS	start_codon	9110987	9110989	.	+	0	transcript_id "Ledus.S1G094700.t1"; gene_id "Ledus.S1G094700"
Ledus.S1	AUGUSTUS	CDS	9110987	9111232	0.95	+	0	transcript_id "Ledus.S1G094700.t1"; gene_id "Ledus.S1G094700"
Ledus.S1	AUGUSTUS	exon	9110987	9111232	.	+	.	transcript_id "Ledus.S1G094700.t1"; gene_id "Ledus.S1G094700"
Ledus.S1	AUGUSTUS	stop_codon	9111233	9111235	.	+	0	transcript_id "Ledus.S1G094700.t1"; gene_id "Ledus.S1G094700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6489.t1 is derived from g3932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31598702	31599954	.	+	.	Ledus.S1G391000
Ledus.S1	AUGUSTUS	transcript	31598702	31599954	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	start_codon	31598702	31598704	.	+	0	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	CDS	31598702	31598731	0.5	+	0	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	exon	31598702	31598731	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	intron	31598732	31598821	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	CDS	31598822	31599004	1	+	0	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	exon	31598822	31599004	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	intron	31599005	31599079	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	CDS	31599080	31599230	1	+	0	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	exon	31599080	31599230	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	intron	31599231	31599326	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	CDS	31599327	31599415	1	+	2	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	exon	31599327	31599415	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	intron	31599416	31599507	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	CDS	31599508	31599562	1	+	0	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	exon	31599508	31599562	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	intron	31599563	31599643	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	CDS	31599644	31599729	1	+	2	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	exon	31599644	31599729	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	intron	31599730	31599813	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	CDS	31599814	31599954	0.73	+	0	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	exon	31599814	31599954	.	+	.	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
Ledus.S1	AUGUSTUS	stop_codon	31599955	31599957	.	+	0	transcript_id "Ledus.S1G391000.t1"; gene_id "Ledus.S1G391000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3503.t1 is derived from g938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8824092	8824448	.	-	.	Ledus.S1G092400
Ledus.S1	AUGUSTUS	transcript	8824092	8824448	.	-	.	transcript_id "Ledus.S1G092400.t1"; gene_id "Ledus.S1G092400"
Ledus.S1	AUGUSTUS	stop_codon	8824089	8824091	.	-	0	transcript_id "Ledus.S1G092400.t1"; gene_id "Ledus.S1G092400"
Ledus.S1	AUGUSTUS	CDS	8824092	8824268	0.4	-	0	transcript_id "Ledus.S1G092400.t1"; gene_id "Ledus.S1G092400"
Ledus.S1	AUGUSTUS	exon	8824092	8824268	.	-	.	transcript_id "Ledus.S1G092400.t1"; gene_id "Ledus.S1G092400"
Ledus.S1	AUGUSTUS	intron	8824269	8824376	.	-	.	transcript_id "Ledus.S1G092400.t1"; gene_id "Ledus.S1G092400"
Ledus.S1	AUGUSTUS	CDS	8824377	8824448	0.3	-	0	transcript_id "Ledus.S1G092400.t1"; gene_id "Ledus.S1G092400"
Ledus.S1	AUGUSTUS	exon	8824377	8824448	.	-	.	transcript_id "Ledus.S1G092400.t1"; gene_id "Ledus.S1G092400"
Ledus.S1	AUGUSTUS	start_codon	8824446	8824448	.	-	0	transcript_id "Ledus.S1G092400.t1"; gene_id "Ledus.S1G092400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2042.t1 is derived from g8905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14298132	14306790	.	+	.	Ledus.S2G192400
Ledus.S2	AUGUSTUS	transcript	14298132	14306790	.	+	.	transcript_id "Ledus.S2G192400.t1"; gene_id "Ledus.S2G192400"
Ledus.S2	AUGUSTUS	start_codon	14298132	14298134	.	+	0	transcript_id "Ledus.S2G192400.t1"; gene_id "Ledus.S2G192400"
Ledus.S2	AUGUSTUS	CDS	14298132	14298197	0.99	+	0	transcript_id "Ledus.S2G192400.t1"; gene_id "Ledus.S2G192400"
Ledus.S2	AUGUSTUS	exon	14298132	14298197	.	+	.	transcript_id "Ledus.S2G192400.t1"; gene_id "Ledus.S2G192400"
Ledus.S2	AUGUSTUS	intron	14298198	14298312	.	+	.	transcript_id "Ledus.S2G192400.t1"; gene_id "Ledus.S2G192400"
Ledus.S2	AUGUSTUS	CDS	14298313	14299706	0.97	+	0	transcript_id "Ledus.S2G192400.t1"; gene_id "Ledus.S2G192400"
Ledus.S2	AUGUSTUS	exon	14298313	14299706	.	+	.	transcript_id "Ledus.S2G192400.t1"; gene_id "Ledus.S2G192400"
Ledus.S2	AUGUSTUS	intron	14299707	14299790	.	+	.	transcript_id "Ledus.S2G192400.t1"; gene_id "Ledus.S2G192400"
Ledus.S2	AUGUSTUS	CDS	14299791	14306790	0.99	+	1	transcript_id "Ledus.S2G192400.t1"; gene_id "Ledus.S2G192400"
Ledus.S2	AUGUSTUS	exon	14299791	14306790	.	+	.	transcript_id "Ledus.S2G192400.t1"; gene_id "Ledus.S2G192400"
Ledus.S2	AUGUSTUS	stop_codon	14306791	14306793	.	+	0	transcript_id "Ledus.S2G192400.t1"; gene_id "Ledus.S2G192400"
# This transcript jg11479.t2 is derived from g5097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11480.t1 is derived from g5098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4736841	4737113	.	-	.	Ledus.S4G063600
Ledus.S4	AUGUSTUS	transcript	4736841	4737113	.	-	.	transcript_id "Ledus.S4G063600.t1"; gene_id "Ledus.S4G063600"
Ledus.S4	AUGUSTUS	stop_codon	4736838	4736840	.	-	0	transcript_id "Ledus.S4G063600.t1"; gene_id "Ledus.S4G063600"
Ledus.S4	AUGUSTUS	CDS	4736841	4737113	0.89	-	0	transcript_id "Ledus.S4G063600.t1"; gene_id "Ledus.S4G063600"
Ledus.S4	AUGUSTUS	exon	4736841	4737113	.	-	.	transcript_id "Ledus.S4G063600.t1"; gene_id "Ledus.S4G063600"
Ledus.S4	AUGUSTUS	start_codon	4737111	4737113	.	-	0	transcript_id "Ledus.S4G063600.t1"; gene_id "Ledus.S4G063600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11610.t1 is derived from g5228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5514346	5519889	.	-	.	Ledus.S4G076600
Ledus.S4	AUGUSTUS	transcript	5514346	5519889	.	-	.	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	stop_codon	5514343	5514345	.	-	0	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	CDS	5514346	5516733	0.97	-	0	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	exon	5514346	5516733	.	-	.	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	intron	5516734	5516911	.	-	.	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	CDS	5516912	5516974	1	-	0	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	exon	5516912	5516974	.	-	.	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	intron	5516975	5517499	.	-	.	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	CDS	5517500	5517620	0.99	-	1	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	exon	5517500	5517620	.	-	.	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	intron	5517621	5517737	.	-	.	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	CDS	5517738	5519419	1	-	0	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	exon	5517738	5519419	.	-	.	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	intron	5519420	5519847	.	-	.	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	CDS	5519848	5519889	0.93	-	0	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	exon	5519848	5519889	.	-	.	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
Ledus.S4	AUGUSTUS	start_codon	5519887	5519889	.	-	0	transcript_id "Ledus.S4G076600.t1"; gene_id "Ledus.S4G076600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6099.t1 is derived from g3542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28906490	28907277	.	+	.	Ledus.S1G352000
Ledus.S1	AUGUSTUS	transcript	28906490	28907277	.	+	.	transcript_id "Ledus.S1G352000.t1"; gene_id "Ledus.S1G352000"
Ledus.S1	AUGUSTUS	start_codon	28906490	28906492	.	+	0	transcript_id "Ledus.S1G352000.t1"; gene_id "Ledus.S1G352000"
Ledus.S1	AUGUSTUS	CDS	28906490	28906601	0.81	+	0	transcript_id "Ledus.S1G352000.t1"; gene_id "Ledus.S1G352000"
Ledus.S1	AUGUSTUS	exon	28906490	28906601	.	+	.	transcript_id "Ledus.S1G352000.t1"; gene_id "Ledus.S1G352000"
Ledus.S1	AUGUSTUS	intron	28906602	28906738	.	+	.	transcript_id "Ledus.S1G352000.t1"; gene_id "Ledus.S1G352000"
Ledus.S1	AUGUSTUS	CDS	28906739	28906861	1	+	2	transcript_id "Ledus.S1G352000.t1"; gene_id "Ledus.S1G352000"
Ledus.S1	AUGUSTUS	exon	28906739	28906861	.	+	.	transcript_id "Ledus.S1G352000.t1"; gene_id "Ledus.S1G352000"
Ledus.S1	AUGUSTUS	intron	28906862	28906942	.	+	.	transcript_id "Ledus.S1G352000.t1"; gene_id "Ledus.S1G352000"
Ledus.S1	AUGUSTUS	CDS	28906943	28907277	1	+	2	transcript_id "Ledus.S1G352000.t1"; gene_id "Ledus.S1G352000"
Ledus.S1	AUGUSTUS	exon	28906943	28907277	.	+	.	transcript_id "Ledus.S1G352000.t1"; gene_id "Ledus.S1G352000"
Ledus.S1	AUGUSTUS	stop_codon	28907278	28907280	.	+	0	transcript_id "Ledus.S1G352000.t1"; gene_id "Ledus.S1G352000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3592.t1 is derived from g1028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9881859	9883187	.	-	.	Ledus.S1G101300
Ledus.S1	AUGUSTUS	transcript	9881859	9883187	.	-	.	transcript_id "Ledus.S1G101300.t1"; gene_id "Ledus.S1G101300"
Ledus.S1	AUGUSTUS	stop_codon	9881856	9881858	.	-	0	transcript_id "Ledus.S1G101300.t1"; gene_id "Ledus.S1G101300"
Ledus.S1	AUGUSTUS	CDS	9881859	9883187	0.66	-	0	transcript_id "Ledus.S1G101300.t1"; gene_id "Ledus.S1G101300"
Ledus.S1	AUGUSTUS	exon	9881859	9883187	.	-	.	transcript_id "Ledus.S1G101300.t1"; gene_id "Ledus.S1G101300"
Ledus.S1	AUGUSTUS	start_codon	9883185	9883187	.	-	0	transcript_id "Ledus.S1G101300.t1"; gene_id "Ledus.S1G101300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3780.t1 is derived from g1216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11953058	11957483	.	-	.	Ledus.S1G120100
Ledus.S1	AUGUSTUS	transcript	11953058	11957483	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	stop_codon	11953055	11953057	.	-	0	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	CDS	11953058	11953246	0.67	-	0	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	exon	11953058	11953246	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	intron	11953247	11953530	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	CDS	11953531	11953674	1	-	0	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	exon	11953531	11953674	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	intron	11953675	11953947	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	CDS	11953948	11954226	0.99	-	0	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	exon	11953948	11954226	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	intron	11954227	11954449	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	CDS	11954450	11954557	0.99	-	0	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	exon	11954450	11954557	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	intron	11954558	11954669	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	CDS	11954670	11954949	0.91	-	1	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	exon	11954670	11954949	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	intron	11954950	11955187	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	CDS	11955188	11956757	0.85	-	2	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	exon	11955188	11956757	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	intron	11956758	11957098	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	CDS	11957099	11957483	0.97	-	0	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	exon	11957099	11957483	.	-	.	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
Ledus.S1	AUGUSTUS	start_codon	11957481	11957483	.	-	0	transcript_id "Ledus.S1G120100.t1"; gene_id "Ledus.S1G120100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10909.t1 is derived from g4527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	409097	409703	.	-	.	Ledus.S4G006500
Ledus.S4	AUGUSTUS	transcript	409097	409703	.	-	.	transcript_id "Ledus.S4G006500.t1"; gene_id "Ledus.S4G006500"
Ledus.S4	AUGUSTUS	stop_codon	409094	409096	.	-	0	transcript_id "Ledus.S4G006500.t1"; gene_id "Ledus.S4G006500"
Ledus.S4	AUGUSTUS	CDS	409097	409537	0.94	-	0	transcript_id "Ledus.S4G006500.t1"; gene_id "Ledus.S4G006500"
Ledus.S4	AUGUSTUS	exon	409097	409537	.	-	.	transcript_id "Ledus.S4G006500.t1"; gene_id "Ledus.S4G006500"
Ledus.S4	AUGUSTUS	intron	409538	409604	.	-	.	transcript_id "Ledus.S4G006500.t1"; gene_id "Ledus.S4G006500"
Ledus.S4	AUGUSTUS	CDS	409605	409703	0.93	-	0	transcript_id "Ledus.S4G006500.t1"; gene_id "Ledus.S4G006500"
Ledus.S4	AUGUSTUS	exon	409605	409703	.	-	.	transcript_id "Ledus.S4G006500.t1"; gene_id "Ledus.S4G006500"
Ledus.S4	AUGUSTUS	start_codon	409701	409703	.	-	0	transcript_id "Ledus.S4G006500.t1"; gene_id "Ledus.S4G006500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11647.t1 is derived from g5266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5723572	5726742	.	+	.	Ledus.S4G080300
Ledus.S4	AUGUSTUS	transcript	5723572	5726742	.	+	.	transcript_id "Ledus.S4G080300.t1"; gene_id "Ledus.S4G080300"
Ledus.S4	AUGUSTUS	start_codon	5723572	5723574	.	+	0	transcript_id "Ledus.S4G080300.t1"; gene_id "Ledus.S4G080300"
Ledus.S4	AUGUSTUS	CDS	5723572	5724276	0.28	+	0	transcript_id "Ledus.S4G080300.t1"; gene_id "Ledus.S4G080300"
Ledus.S4	AUGUSTUS	exon	5723572	5724276	.	+	.	transcript_id "Ledus.S4G080300.t1"; gene_id "Ledus.S4G080300"
Ledus.S4	AUGUSTUS	intron	5724277	5724546	.	+	.	transcript_id "Ledus.S4G080300.t1"; gene_id "Ledus.S4G080300"
Ledus.S4	AUGUSTUS	CDS	5724547	5726742	0.98	+	0	transcript_id "Ledus.S4G080300.t1"; gene_id "Ledus.S4G080300"
Ledus.S4	AUGUSTUS	exon	5724547	5726742	.	+	.	transcript_id "Ledus.S4G080300.t1"; gene_id "Ledus.S4G080300"
Ledus.S4	AUGUSTUS	stop_codon	5726743	5726745	.	+	0	transcript_id "Ledus.S4G080300.t1"; gene_id "Ledus.S4G080300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7286.t1 is derived from g11957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	757592	758110	.	-	.	Ledus.S5G006400
Ledus.S5	AUGUSTUS	transcript	757592	758110	.	-	.	transcript_id "Ledus.S5G006400.t1"; gene_id "Ledus.S5G006400"
Ledus.S5	AUGUSTUS	stop_codon	757589	757591	.	-	0	transcript_id "Ledus.S5G006400.t1"; gene_id "Ledus.S5G006400"
Ledus.S5	AUGUSTUS	CDS	757592	758110	0.99	-	0	transcript_id "Ledus.S5G006400.t1"; gene_id "Ledus.S5G006400"
Ledus.S5	AUGUSTUS	exon	757592	758110	.	-	.	transcript_id "Ledus.S5G006400.t1"; gene_id "Ledus.S5G006400"
Ledus.S5	AUGUSTUS	start_codon	758108	758110	.	-	0	transcript_id "Ledus.S5G006400.t1"; gene_id "Ledus.S5G006400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2587.t1 is derived from g20.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	168977	169394	.	-	.	Ledus.S1G000800
Ledus.S1	AUGUSTUS	transcript	168977	169394	.	-	.	transcript_id "Ledus.S1G000800.t1"; gene_id "Ledus.S1G000800"
Ledus.S1	AUGUSTUS	stop_codon	168974	168976	.	-	0	transcript_id "Ledus.S1G000800.t1"; gene_id "Ledus.S1G000800"
Ledus.S1	AUGUSTUS	CDS	168977	169179	0.4	-	2	transcript_id "Ledus.S1G000800.t1"; gene_id "Ledus.S1G000800"
Ledus.S1	AUGUSTUS	exon	168977	169179	.	-	.	transcript_id "Ledus.S1G000800.t1"; gene_id "Ledus.S1G000800"
Ledus.S1	AUGUSTUS	intron	169180	169246	.	-	.	transcript_id "Ledus.S1G000800.t1"; gene_id "Ledus.S1G000800"
Ledus.S1	AUGUSTUS	CDS	169247	169394	0.27	-	0	transcript_id "Ledus.S1G000800.t1"; gene_id "Ledus.S1G000800"
Ledus.S1	AUGUSTUS	exon	169247	169394	.	-	.	transcript_id "Ledus.S1G000800.t1"; gene_id "Ledus.S1G000800"
Ledus.S1	AUGUSTUS	start_codon	169392	169394	.	-	0	transcript_id "Ledus.S1G000800.t1"; gene_id "Ledus.S1G000800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg429.t1 is derived from g7290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2405529	2405970	.	+	.	Ledus.S2G031100
Ledus.S2	AUGUSTUS	transcript	2405529	2405970	.	+	.	transcript_id "Ledus.S2G031100.t1"; gene_id "Ledus.S2G031100"
Ledus.S2	AUGUSTUS	start_codon	2405529	2405531	.	+	0	transcript_id "Ledus.S2G031100.t1"; gene_id "Ledus.S2G031100"
Ledus.S2	AUGUSTUS	CDS	2405529	2405662	0.46	+	0	transcript_id "Ledus.S2G031100.t1"; gene_id "Ledus.S2G031100"
Ledus.S2	AUGUSTUS	exon	2405529	2405662	.	+	.	transcript_id "Ledus.S2G031100.t1"; gene_id "Ledus.S2G031100"
Ledus.S2	AUGUSTUS	intron	2405663	2405782	.	+	.	transcript_id "Ledus.S2G031100.t1"; gene_id "Ledus.S2G031100"
Ledus.S2	AUGUSTUS	CDS	2405783	2405831	0.17	+	1	transcript_id "Ledus.S2G031100.t1"; gene_id "Ledus.S2G031100"
Ledus.S2	AUGUSTUS	exon	2405783	2405831	.	+	.	transcript_id "Ledus.S2G031100.t1"; gene_id "Ledus.S2G031100"
Ledus.S2	AUGUSTUS	intron	2405832	2405925	.	+	.	transcript_id "Ledus.S2G031100.t1"; gene_id "Ledus.S2G031100"
Ledus.S2	AUGUSTUS	CDS	2405926	2405970	0.57	+	0	transcript_id "Ledus.S2G031100.t1"; gene_id "Ledus.S2G031100"
Ledus.S2	AUGUSTUS	exon	2405926	2405970	.	+	.	transcript_id "Ledus.S2G031100.t1"; gene_id "Ledus.S2G031100"
Ledus.S2	AUGUSTUS	stop_codon	2405971	2405973	.	+	0	transcript_id "Ledus.S2G031100.t1"; gene_id "Ledus.S2G031100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7914.t1 is derived from g12585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7794152	7807591	.	-	.	Ledus.S5G069200
Ledus.S5	AUGUSTUS	transcript	7794152	7807591	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	stop_codon	7794149	7794151	.	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7794152	7794226	0.77	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7794152	7794226	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7794227	7794327	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7794328	7794456	0.97	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7794328	7794456	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7794457	7794629	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7794630	7794785	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7794630	7794785	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7794786	7794881	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7794882	7795061	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7794882	7795061	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7795062	7795165	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7795166	7795333	0.99	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7795166	7795333	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7795334	7795535	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7795536	7795631	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7795536	7795631	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7795632	7795800	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7795801	7795863	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7795801	7795863	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7795864	7795943	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7795944	7796112	1	-	1	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7795944	7796112	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7796113	7796256	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7796257	7796324	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7796257	7796324	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7796325	7796493	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7796494	7796637	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7796494	7796637	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7796638	7796775	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7796776	7796931	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7796776	7796931	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7796932	7797019	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7797020	7797085	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7797020	7797085	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7797086	7797224	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7797225	7797416	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7797225	7797416	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7797417	7797511	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7797512	7797661	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7797512	7797661	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7797662	7797741	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7797742	7797832	1	-	1	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7797742	7797832	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7797833	7797978	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7797979	7798067	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7797979	7798067	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7798068	7798190	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7798191	7798253	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7798191	7798253	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7798254	7798463	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7798464	7798589	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7798464	7798589	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7798590	7798734	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7798735	7798824	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7798735	7798824	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7798825	7798907	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7798908	7799030	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7798908	7799030	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7799031	7799126	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7799127	7799243	0.97	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7799127	7799243	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7799244	7799360	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7799361	7799564	0.96	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7799361	7799564	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7799565	7799653	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7799654	7799734	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7799654	7799734	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7799735	7799882	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7799883	7799963	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7799883	7799963	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7799964	7800178	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7800179	7800280	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7800179	7800280	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7800281	7800376	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7800377	7800601	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7800377	7800601	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7800602	7800771	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7800772	7800927	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7800772	7800927	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7800928	7801078	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7801079	7801291	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7801079	7801291	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7801292	7801538	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7801539	7801688	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7801539	7801688	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7801689	7801819	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7801820	7801942	0.99	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7801820	7801942	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7801943	7802043	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7802044	7802109	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7802044	7802109	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7802110	7802267	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7802268	7802333	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7802268	7802333	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7802334	7802468	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7802469	7802600	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7802469	7802600	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7802601	7802744	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7802745	7802819	0.87	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7802745	7802819	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7802820	7802941	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7802942	7803025	0.5	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7802942	7803025	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7803026	7803137	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7803138	7803290	0.86	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7803138	7803290	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7803291	7803374	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7803375	7803440	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7803375	7803440	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7803441	7803555	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7803556	7803717	0.65	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7803556	7803717	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7803718	7803876	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7803877	7803993	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7803877	7803993	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7803994	7804157	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7804158	7804229	0.88	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7804158	7804229	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7804230	7804355	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7804356	7804415	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7804356	7804415	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7804416	7804573	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7804574	7804690	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7804574	7804690	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7804691	7804816	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7804817	7805146	0.99	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7804817	7805146	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7805147	7805287	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7805288	7805392	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7805288	7805392	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7805393	7805551	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7805552	7805617	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7805552	7805617	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7805618	7805902	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7805903	7806395	1	-	1	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7805903	7806395	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7806396	7806552	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7806553	7806718	1	-	2	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7806553	7806718	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7806719	7806817	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7806818	7806882	1	-	1	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7806818	7806882	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7806883	7807284	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7807285	7807397	1	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7807285	7807397	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	intron	7807398	7807486	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	CDS	7807487	7807591	0.69	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	exon	7807487	7807591	.	-	.	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
Ledus.S5	AUGUSTUS	start_codon	7807589	7807591	.	-	0	transcript_id "Ledus.S5G069200.t1"; gene_id "Ledus.S5G069200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8201.t1 is derived from g12872.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9816021	9817293	.	+	.	Ledus.S5G097900
Ledus.S5	AUGUSTUS	transcript	9816021	9817293	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	start_codon	9816021	9816023	.	+	0	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	CDS	9816021	9816077	0.42	+	0	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	exon	9816021	9816077	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	intron	9816078	9816146	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	CDS	9816147	9816179	0.7	+	0	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	exon	9816147	9816179	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	intron	9816180	9816263	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	CDS	9816264	9816336	1	+	0	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	exon	9816264	9816336	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	intron	9816337	9816578	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	CDS	9816579	9816630	1	+	2	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	exon	9816579	9816630	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	intron	9816631	9816720	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	CDS	9816721	9816790	1	+	1	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	exon	9816721	9816790	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	intron	9816791	9816887	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	CDS	9816888	9816918	0.39	+	0	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	exon	9816888	9816918	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	intron	9816919	9817051	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	CDS	9817052	9817132	0.39	+	2	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	exon	9817052	9817132	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	intron	9817133	9817279	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	CDS	9817280	9817293	0.35	+	2	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	exon	9817280	9817293	.	+	.	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
Ledus.S5	AUGUSTUS	stop_codon	9817294	9817296	.	+	0	transcript_id "Ledus.S5G097900.t1"; gene_id "Ledus.S5G097900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5126.t1 is derived from g2565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21873765	21874365	.	+	.	Ledus.S1G254700
Ledus.S1	AUGUSTUS	transcript	21873765	21874365	.	+	.	transcript_id "Ledus.S1G254700.t1"; gene_id "Ledus.S1G254700"
Ledus.S1	AUGUSTUS	start_codon	21873765	21873767	.	+	0	transcript_id "Ledus.S1G254700.t1"; gene_id "Ledus.S1G254700"
Ledus.S1	AUGUSTUS	CDS	21873765	21873874	0.57	+	0	transcript_id "Ledus.S1G254700.t1"; gene_id "Ledus.S1G254700"
Ledus.S1	AUGUSTUS	exon	21873765	21873874	.	+	.	transcript_id "Ledus.S1G254700.t1"; gene_id "Ledus.S1G254700"
Ledus.S1	AUGUSTUS	intron	21873875	21874181	.	+	.	transcript_id "Ledus.S1G254700.t1"; gene_id "Ledus.S1G254700"
Ledus.S1	AUGUSTUS	CDS	21874182	21874365	0.5	+	1	transcript_id "Ledus.S1G254700.t1"; gene_id "Ledus.S1G254700"
Ledus.S1	AUGUSTUS	exon	21874182	21874365	.	+	.	transcript_id "Ledus.S1G254700.t1"; gene_id "Ledus.S1G254700"
Ledus.S1	AUGUSTUS	stop_codon	21874366	21874368	.	+	0	transcript_id "Ledus.S1G254700.t1"; gene_id "Ledus.S1G254700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12791.t1 is derived from g6413.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14553263	14559610	.	-	.	Ledus.S4G194700
Ledus.S4	AUGUSTUS	transcript	14553263	14559610	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	stop_codon	14553260	14553262	.	-	0	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14553263	14553420	0.84	-	2	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14553263	14553420	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14553421	14553554	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14553555	14553608	1	-	2	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14553555	14553608	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14553609	14554024	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14554025	14554097	1	-	0	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14554025	14554097	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14554098	14554494	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14554495	14554542	1	-	0	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14554495	14554542	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14554543	14554661	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14554662	14554775	1	-	0	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14554662	14554775	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14554776	14554950	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14554951	14555082	1	-	0	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14554951	14555082	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14555083	14555492	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14555493	14555577	1	-	1	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14555493	14555577	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14555578	14556232	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14556233	14556312	1	-	0	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14556233	14556312	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14556313	14557054	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14557055	14557298	1	-	1	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14557055	14557298	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14557299	14557771	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14557772	14558013	1	-	0	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14557772	14558013	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14558014	14558213	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14558214	14558297	1	-	0	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14558214	14558297	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14558298	14558577	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14558578	14558752	1	-	1	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14558578	14558752	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14558753	14558883	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14558884	14558968	0.91	-	2	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14558884	14558968	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14558969	14559099	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14559100	14559182	0.54	-	1	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14559100	14559182	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	intron	14559183	14559365	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	CDS	14559366	14559610	0.99	-	0	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	exon	14559366	14559610	.	-	.	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
Ledus.S4	AUGUSTUS	start_codon	14559608	14559610	.	-	0	transcript_id "Ledus.S4G194700.t1"; gene_id "Ledus.S4G194700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg589.t1 is derived from g7450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3518242	3519802	.	-	.	Ledus.S2G047100
Ledus.S2	AUGUSTUS	transcript	3518242	3519802	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	stop_codon	3518239	3518241	.	-	0	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	CDS	3518242	3518358	0.59	-	0	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	exon	3518242	3518358	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	intron	3518359	3518464	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	CDS	3518465	3518615	0.98	-	1	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	exon	3518465	3518615	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	intron	3518616	3518697	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	CDS	3518698	3518780	1	-	0	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	exon	3518698	3518780	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	intron	3518781	3518874	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	CDS	3518875	3519108	0.65	-	0	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	exon	3518875	3519108	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	intron	3519109	3519209	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	CDS	3519210	3519254	0.7	-	0	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	exon	3519210	3519254	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	intron	3519255	3519332	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	CDS	3519333	3519407	1	-	0	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	exon	3519333	3519407	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	intron	3519408	3519507	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	CDS	3519508	3519573	1	-	0	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	exon	3519508	3519573	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	intron	3519574	3519661	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	CDS	3519662	3519802	0.97	-	0	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	exon	3519662	3519802	.	-	.	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
Ledus.S2	AUGUSTUS	start_codon	3519800	3519802	.	-	0	transcript_id "Ledus.S2G047100.t1"; gene_id "Ledus.S2G047100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg100.t1 is derived from g9513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	411646	412953	.	-	.	Ledus.C8G006000
Ledus.C8	AUGUSTUS	transcript	411646	412953	.	-	.	transcript_id "Ledus.C8G006000.t1"; gene_id "Ledus.C8G006000"
Ledus.C8	AUGUSTUS	stop_codon	411643	411645	.	-	0	transcript_id "Ledus.C8G006000.t1"; gene_id "Ledus.C8G006000"
Ledus.C8	AUGUSTUS	CDS	411646	412953	0.8	-	0	transcript_id "Ledus.C8G006000.t1"; gene_id "Ledus.C8G006000"
Ledus.C8	AUGUSTUS	exon	411646	412953	.	-	.	transcript_id "Ledus.C8G006000.t1"; gene_id "Ledus.C8G006000"
Ledus.C8	AUGUSTUS	start_codon	412951	412953	.	-	0	transcript_id "Ledus.C8G006000.t1"; gene_id "Ledus.C8G006000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1784.t1 is derived from g8647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12556925	12557284	.	+	.	Ledus.S2G166600
Ledus.S2	AUGUSTUS	transcript	12556925	12557284	.	+	.	transcript_id "Ledus.S2G166600.t1"; gene_id "Ledus.S2G166600"
Ledus.S2	AUGUSTUS	start_codon	12556925	12556927	.	+	0	transcript_id "Ledus.S2G166600.t1"; gene_id "Ledus.S2G166600"
Ledus.S2	AUGUSTUS	CDS	12556925	12557284	0.87	+	0	transcript_id "Ledus.S2G166600.t1"; gene_id "Ledus.S2G166600"
Ledus.S2	AUGUSTUS	exon	12556925	12557284	.	+	.	transcript_id "Ledus.S2G166600.t1"; gene_id "Ledus.S2G166600"
Ledus.S2	AUGUSTUS	stop_codon	12557285	12557287	.	+	0	transcript_id "Ledus.S2G166600.t1"; gene_id "Ledus.S2G166600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1718.t1 is derived from g8579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12101328	12103747	.	-	.	Ledus.S2G160000
Ledus.S2	AUGUSTUS	transcript	12101328	12103747	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	stop_codon	12101325	12101327	.	-	0	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	CDS	12101328	12101393	0.97	-	0	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	exon	12101328	12101393	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	intron	12101394	12101554	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	CDS	12101555	12101948	0.83	-	1	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	exon	12101555	12101948	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	intron	12101949	12102052	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	CDS	12102053	12102163	1	-	1	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	exon	12102053	12102163	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	intron	12102164	12102283	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	CDS	12102284	12102657	1	-	0	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	exon	12102284	12102657	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	intron	12102658	12102840	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	CDS	12102841	12102949	1	-	1	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	exon	12102841	12102949	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	intron	12102950	12103077	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	CDS	12103078	12103140	1	-	1	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	exon	12103078	12103140	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	intron	12103141	12103368	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	CDS	12103369	12103415	1	-	0	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	exon	12103369	12103415	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	intron	12103416	12103645	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	CDS	12103646	12103747	1	-	0	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	exon	12103646	12103747	.	-	.	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
Ledus.S2	AUGUSTUS	start_codon	12103745	12103747	.	-	0	transcript_id "Ledus.S2G160000.t1"; gene_id "Ledus.S2G160000"
# This transcript jg7898.t2 is derived from g12569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7899.t1 is derived from g12570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7726904	7728121	.	-	.	Ledus.S5G067700
Ledus.S5	AUGUSTUS	transcript	7726904	7728121	.	-	.	transcript_id "Ledus.S5G067700.t1"; gene_id "Ledus.S5G067700"
Ledus.S5	AUGUSTUS	stop_codon	7726901	7726903	.	-	0	transcript_id "Ledus.S5G067700.t1"; gene_id "Ledus.S5G067700"
Ledus.S5	AUGUSTUS	CDS	7726904	7728121	0.99	-	0	transcript_id "Ledus.S5G067700.t1"; gene_id "Ledus.S5G067700"
Ledus.S5	AUGUSTUS	exon	7726904	7728121	.	-	.	transcript_id "Ledus.S5G067700.t1"; gene_id "Ledus.S5G067700"
Ledus.S5	AUGUSTUS	start_codon	7728119	7728121	.	-	0	transcript_id "Ledus.S5G067700.t1"; gene_id "Ledus.S5G067700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8223.t1 is derived from g12894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10017157	10018362	.	-	.	Ledus.S5G100100
Ledus.S5	AUGUSTUS	transcript	10017157	10018362	.	-	.	transcript_id "Ledus.S5G100100.t1"; gene_id "Ledus.S5G100100"
Ledus.S5	AUGUSTUS	stop_codon	10017154	10017156	.	-	0	transcript_id "Ledus.S5G100100.t1"; gene_id "Ledus.S5G100100"
Ledus.S5	AUGUSTUS	CDS	10017157	10018362	0.89	-	0	transcript_id "Ledus.S5G100100.t1"; gene_id "Ledus.S5G100100"
Ledus.S5	AUGUSTUS	exon	10017157	10018362	.	-	.	transcript_id "Ledus.S5G100100.t1"; gene_id "Ledus.S5G100100"
Ledus.S5	AUGUSTUS	start_codon	10018360	10018362	.	-	0	transcript_id "Ledus.S5G100100.t1"; gene_id "Ledus.S5G100100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7067.t1 is derived from g6598.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1184177	1185127	.	+	.	Ledus.C7G012800
Ledus.C7	AUGUSTUS	transcript	1184177	1185127	.	+	.	transcript_id "Ledus.C7G012800.t1"; gene_id "Ledus.C7G012800"
Ledus.C7	AUGUSTUS	start_codon	1184177	1184179	.	+	0	transcript_id "Ledus.C7G012800.t1"; gene_id "Ledus.C7G012800"
Ledus.C7	AUGUSTUS	CDS	1184177	1184492	0.46	+	0	transcript_id "Ledus.C7G012800.t1"; gene_id "Ledus.C7G012800"
Ledus.C7	AUGUSTUS	exon	1184177	1184492	.	+	.	transcript_id "Ledus.C7G012800.t1"; gene_id "Ledus.C7G012800"
Ledus.C7	AUGUSTUS	intron	1184493	1184657	.	+	.	transcript_id "Ledus.C7G012800.t1"; gene_id "Ledus.C7G012800"
Ledus.C7	AUGUSTUS	CDS	1184658	1185127	0.4	+	2	transcript_id "Ledus.C7G012800.t1"; gene_id "Ledus.C7G012800"
Ledus.C7	AUGUSTUS	exon	1184658	1185127	.	+	.	transcript_id "Ledus.C7G012800.t1"; gene_id "Ledus.C7G012800"
Ledus.C7	AUGUSTUS	stop_codon	1185128	1185130	.	+	0	transcript_id "Ledus.C7G012800.t1"; gene_id "Ledus.C7G012800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9166.t1 is derived from g10196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5199725	5200434	.	+	.	Ledus.S3G064300
Ledus.S3	AUGUSTUS	transcript	5199725	5200434	.	+	.	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	start_codon	5199725	5199727	.	+	0	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	CDS	5199725	5199925	0.53	+	0	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	exon	5199725	5199925	.	+	.	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	intron	5199926	5200092	.	+	.	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	CDS	5200093	5200142	1	+	0	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	exon	5200093	5200142	.	+	.	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	intron	5200143	5200226	.	+	.	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	CDS	5200227	5200271	1	+	1	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	exon	5200227	5200271	.	+	.	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	intron	5200272	5200352	.	+	.	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	CDS	5200353	5200434	1	+	1	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	exon	5200353	5200434	.	+	.	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
Ledus.S3	AUGUSTUS	stop_codon	5200435	5200437	.	+	0	transcript_id "Ledus.S3G064300.t1"; gene_id "Ledus.S3G064300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1218.t1 is derived from g8079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8660684	8664505	.	+	.	Ledus.S2G110000
Ledus.S2	AUGUSTUS	transcript	8660684	8664505	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	start_codon	8660684	8660686	.	+	0	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	CDS	8660684	8661406	0.89	+	0	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	exon	8660684	8661406	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	intron	8661407	8661495	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	CDS	8661496	8661651	1	+	0	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	exon	8661496	8661651	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	intron	8661652	8661738	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	CDS	8661739	8661897	0.98	+	0	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	exon	8661739	8661897	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	intron	8661898	8661999	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	CDS	8662000	8662083	0.97	+	0	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	exon	8662000	8662083	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	intron	8662084	8662175	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	CDS	8662176	8662255	1	+	0	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	exon	8662176	8662255	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	intron	8662256	8662342	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	CDS	8662343	8662393	1	+	1	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	exon	8662343	8662393	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	intron	8662394	8662488	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	CDS	8662489	8662591	1	+	1	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	exon	8662489	8662591	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	intron	8662592	8662713	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	CDS	8662714	8662796	1	+	0	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	exon	8662714	8662796	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	intron	8662797	8662886	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	CDS	8662887	8662932	1	+	1	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	exon	8662887	8662932	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	intron	8662933	8663010	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	CDS	8663011	8663098	1	+	0	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	exon	8663011	8663098	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	intron	8663099	8663249	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	CDS	8663250	8663713	0.82	+	2	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	exon	8663250	8663713	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	intron	8663714	8663824	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	CDS	8663825	8664505	0.93	+	0	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	exon	8663825	8664505	.	+	.	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
Ledus.S2	AUGUSTUS	stop_codon	8664506	8664508	.	+	0	transcript_id "Ledus.S2G110000.t1"; gene_id "Ledus.S2G110000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8848.t1 is derived from g9878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2261092	2263718	.	+	.	Ledus.S3G032500
Ledus.S3	AUGUSTUS	transcript	2261092	2263718	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	start_codon	2261092	2261094	.	+	0	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	CDS	2261092	2261283	0.76	+	0	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	exon	2261092	2261283	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	intron	2261284	2261369	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	CDS	2261370	2261510	1	+	0	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	exon	2261370	2261510	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	intron	2261511	2261595	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	CDS	2261596	2262039	0.96	+	0	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	exon	2261596	2262039	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	intron	2262040	2262139	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	CDS	2262140	2262295	1	+	0	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	exon	2262140	2262295	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	intron	2262296	2262372	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	CDS	2262373	2262606	1	+	0	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	exon	2262373	2262606	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	intron	2262607	2262683	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	CDS	2262684	2262772	1	+	0	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	exon	2262684	2262772	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	intron	2262773	2262866	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	CDS	2262867	2262957	1	+	1	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	exon	2262867	2262957	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	intron	2262958	2263040	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	CDS	2263041	2263121	1	+	0	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	exon	2263041	2263121	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	intron	2263122	2263279	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	CDS	2263280	2263347	1	+	0	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	exon	2263280	2263347	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	intron	2263348	2263429	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	CDS	2263430	2263508	0.79	+	1	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	exon	2263430	2263508	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	intron	2263509	2263622	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	CDS	2263623	2263718	0.71	+	0	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	exon	2263623	2263718	.	+	.	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
Ledus.S3	AUGUSTUS	stop_codon	2263719	2263721	.	+	0	transcript_id "Ledus.S3G032500.t1"; gene_id "Ledus.S3G032500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1187.t1 is derived from g8048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8401172	8401725	.	-	.	Ledus.S2G106900
Ledus.S2	AUGUSTUS	transcript	8401172	8401725	.	-	.	transcript_id "Ledus.S2G106900.t1"; gene_id "Ledus.S2G106900"
Ledus.S2	AUGUSTUS	stop_codon	8401169	8401171	.	-	0	transcript_id "Ledus.S2G106900.t1"; gene_id "Ledus.S2G106900"
Ledus.S2	AUGUSTUS	CDS	8401172	8401496	0.51	-	1	transcript_id "Ledus.S2G106900.t1"; gene_id "Ledus.S2G106900"
Ledus.S2	AUGUSTUS	exon	8401172	8401496	.	-	.	transcript_id "Ledus.S2G106900.t1"; gene_id "Ledus.S2G106900"
Ledus.S2	AUGUSTUS	intron	8401497	8401591	.	-	.	transcript_id "Ledus.S2G106900.t1"; gene_id "Ledus.S2G106900"
Ledus.S2	AUGUSTUS	CDS	8401592	8401725	0.71	-	0	transcript_id "Ledus.S2G106900.t1"; gene_id "Ledus.S2G106900"
Ledus.S2	AUGUSTUS	exon	8401592	8401725	.	-	.	transcript_id "Ledus.S2G106900.t1"; gene_id "Ledus.S2G106900"
Ledus.S2	AUGUSTUS	start_codon	8401723	8401725	.	-	0	transcript_id "Ledus.S2G106900.t1"; gene_id "Ledus.S2G106900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7120.t1 is derived from g6651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1668442	1671568	.	+	.	Ledus.C7G018100
Ledus.C7	AUGUSTUS	transcript	1668442	1671568	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	start_codon	1668442	1668444	.	+	0	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	CDS	1668442	1668620	0.83	+	0	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	exon	1668442	1668620	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	intron	1668621	1668708	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	CDS	1668709	1668967	0.99	+	1	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	exon	1668709	1668967	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	intron	1668968	1669062	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	CDS	1669063	1670339	1	+	0	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	exon	1669063	1670339	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	intron	1670340	1670424	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	CDS	1670425	1670594	1	+	1	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	exon	1670425	1670594	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	intron	1670595	1670696	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	CDS	1670697	1670943	1	+	2	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	exon	1670697	1670943	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	intron	1670944	1671035	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	CDS	1671036	1671339	1	+	1	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	exon	1671036	1671339	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	intron	1671340	1671418	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	CDS	1671419	1671568	0.96	+	0	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	exon	1671419	1671568	.	+	.	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
Ledus.C7	AUGUSTUS	stop_codon	1671569	1671571	.	+	0	transcript_id "Ledus.C7G018100.t1"; gene_id "Ledus.C7G018100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12964.t1 is derived from g6774.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1214581	1214811	.	-	.	Ledus.S6G002600
Ledus.S6	AUGUSTUS	transcript	1214581	1214811	.	-	.	transcript_id "Ledus.S6G002600.t1"; gene_id "Ledus.S6G002600"
Ledus.S6	AUGUSTUS	stop_codon	1214578	1214580	.	-	0	transcript_id "Ledus.S6G002600.t1"; gene_id "Ledus.S6G002600"
Ledus.S6	AUGUSTUS	CDS	1214581	1214811	0.76	-	0	transcript_id "Ledus.S6G002600.t1"; gene_id "Ledus.S6G002600"
Ledus.S6	AUGUSTUS	exon	1214581	1214811	.	-	.	transcript_id "Ledus.S6G002600.t1"; gene_id "Ledus.S6G002600"
Ledus.S6	AUGUSTUS	start_codon	1214809	1214811	.	-	0	transcript_id "Ledus.S6G002600.t1"; gene_id "Ledus.S6G002600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12621.t1 is derived from g6243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13258072	13260640	.	-	.	Ledus.S4G177700
Ledus.S4	AUGUSTUS	transcript	13258072	13260640	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	stop_codon	13258069	13258071	.	-	0	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	CDS	13258072	13258112	1	-	2	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	exon	13258072	13258112	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	intron	13258113	13258191	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	CDS	13258192	13258354	1	-	0	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	exon	13258192	13258354	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	intron	13258355	13258454	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	CDS	13258455	13258603	1	-	2	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	exon	13258455	13258603	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	intron	13258604	13258704	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	CDS	13258705	13258957	0.84	-	0	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	exon	13258705	13258957	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	intron	13258958	13259051	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	CDS	13259052	13259115	1	-	1	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	exon	13259052	13259115	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	intron	13259116	13259196	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	CDS	13259197	13259543	1	-	0	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	exon	13259197	13259543	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	intron	13259544	13259781	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	CDS	13259782	13259994	1	-	0	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	exon	13259782	13259994	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	intron	13259995	13260082	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	CDS	13260083	13260188	1	-	1	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	exon	13260083	13260188	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	intron	13260189	13260259	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	CDS	13260260	13260510	1	-	0	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	exon	13260260	13260510	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	intron	13260511	13260598	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	CDS	13260599	13260640	0.99	-	0	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	exon	13260599	13260640	.	-	.	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
Ledus.S4	AUGUSTUS	start_codon	13260638	13260640	.	-	0	transcript_id "Ledus.S4G177700.t1"; gene_id "Ledus.S4G177700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg568.t1 is derived from g7429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3387551	3391026	.	-	.	Ledus.S2G045000
Ledus.S2	AUGUSTUS	transcript	3387551	3391026	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	stop_codon	3387548	3387550	.	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3387551	3387691	0.99	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3387551	3387691	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3387692	3387774	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3387775	3387858	1	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3387775	3387858	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3387859	3387949	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3387950	3388059	1	-	2	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3387950	3388059	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3388060	3388147	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3388148	3388240	1	-	2	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3388148	3388240	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3388241	3388332	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3388333	3388381	1	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3388333	3388381	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3388382	3388442	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3388443	3388508	0.99	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3388443	3388508	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3388509	3388616	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3388617	3388695	1	-	1	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3388617	3388695	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3388696	3388853	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3388854	3388945	1	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3388854	3388945	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3388946	3389081	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3389082	3389198	1	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3389082	3389198	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3389199	3389296	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3389297	3389353	1	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3389297	3389353	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3389354	3389444	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3389445	3389589	1	-	1	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3389445	3389589	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3389590	3389671	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3389672	3389775	1	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3389672	3389775	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3389776	3389959	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3389960	3390034	1	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3389960	3390034	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3390035	3390131	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3390132	3390192	1	-	1	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3390132	3390192	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3390193	3390279	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3390280	3390374	1	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3390280	3390374	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3390375	3390520	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3390521	3390679	1	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3390521	3390679	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	intron	3390680	3390762	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	CDS	3390763	3391026	0.73	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	exon	3390763	3391026	.	-	.	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
Ledus.S2	AUGUSTUS	start_codon	3391024	3391026	.	-	0	transcript_id "Ledus.S2G045000.t1"; gene_id "Ledus.S2G045000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2077.t1 is derived from g8940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14588227	14589912	.	+	.	Ledus.S2G195900
Ledus.S2	AUGUSTUS	transcript	14588227	14589912	.	+	.	transcript_id "Ledus.S2G195900.t1"; gene_id "Ledus.S2G195900"
Ledus.S2	AUGUSTUS	start_codon	14588227	14588229	.	+	0	transcript_id "Ledus.S2G195900.t1"; gene_id "Ledus.S2G195900"
Ledus.S2	AUGUSTUS	CDS	14588227	14588359	0.61	+	0	transcript_id "Ledus.S2G195900.t1"; gene_id "Ledus.S2G195900"
Ledus.S2	AUGUSTUS	exon	14588227	14588359	.	+	.	transcript_id "Ledus.S2G195900.t1"; gene_id "Ledus.S2G195900"
Ledus.S2	AUGUSTUS	intron	14588360	14588443	.	+	.	transcript_id "Ledus.S2G195900.t1"; gene_id "Ledus.S2G195900"
Ledus.S2	AUGUSTUS	CDS	14588444	14588573	1	+	2	transcript_id "Ledus.S2G195900.t1"; gene_id "Ledus.S2G195900"
Ledus.S2	AUGUSTUS	exon	14588444	14588573	.	+	.	transcript_id "Ledus.S2G195900.t1"; gene_id "Ledus.S2G195900"
Ledus.S2	AUGUSTUS	intron	14588574	14588678	.	+	.	transcript_id "Ledus.S2G195900.t1"; gene_id "Ledus.S2G195900"
Ledus.S2	AUGUSTUS	CDS	14588679	14589912	1	+	1	transcript_id "Ledus.S2G195900.t1"; gene_id "Ledus.S2G195900"
Ledus.S2	AUGUSTUS	exon	14588679	14589912	.	+	.	transcript_id "Ledus.S2G195900.t1"; gene_id "Ledus.S2G195900"
Ledus.S2	AUGUSTUS	stop_codon	14589913	14589915	.	+	0	transcript_id "Ledus.S2G195900.t1"; gene_id "Ledus.S2G195900"
# This transcript jg12019.t2 is derived from g5638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12020.t1 is derived from g5639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8779354	8780656	.	-	.	Ledus.S4G117600
Ledus.S4	AUGUSTUS	transcript	8779354	8780656	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	stop_codon	8779351	8779353	.	-	0	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	CDS	8779354	8779474	0.97	-	1	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	exon	8779354	8779474	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	intron	8779475	8779640	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	CDS	8779641	8779704	1	-	2	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	exon	8779641	8779704	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	intron	8779705	8779874	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	CDS	8779875	8779995	1	-	0	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	exon	8779875	8779995	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	intron	8779996	8780087	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	CDS	8780088	8780193	0.97	-	1	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	exon	8780088	8780193	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	intron	8780194	8780267	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	CDS	8780268	8780299	1	-	0	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	exon	8780268	8780299	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	intron	8780300	8780463	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	CDS	8780464	8780514	0.36	-	0	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	exon	8780464	8780514	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	intron	8780515	8780620	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	CDS	8780621	8780656	0.29	-	0	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	exon	8780621	8780656	.	-	.	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
Ledus.S4	AUGUSTUS	start_codon	8780654	8780656	.	-	0	transcript_id "Ledus.S4G117600.t1"; gene_id "Ledus.S4G117600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5585.t1 is derived from g3024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25264111	25268568	.	-	.	Ledus.S1G300600
Ledus.S1	AUGUSTUS	transcript	25264111	25268568	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	stop_codon	25264108	25264110	.	-	0	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25264111	25264261	0.94	-	1	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25264111	25264261	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25264262	25264358	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25264359	25264434	1	-	2	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25264359	25264434	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25264435	25264554	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25264555	25264667	1	-	1	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25264555	25264667	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25264668	25264766	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25264767	25264875	1	-	2	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25264767	25264875	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25264876	25264967	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25264968	25265391	1	-	0	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25264968	25265391	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25265392	25265542	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25265543	25265701	0.82	-	0	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25265543	25265701	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25265702	25265802	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25265803	25265869	0.78	-	1	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25265803	25265869	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25265870	25265965	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25265966	25266138	1	-	0	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25265966	25266138	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25266139	25266256	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25266257	25266353	1	-	1	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25266257	25266353	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25266354	25266464	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25266465	25266583	1	-	0	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25266465	25266583	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25266584	25266731	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25266732	25266830	0.8	-	0	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25266732	25266830	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25266831	25267109	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25267110	25267194	1	-	1	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25267110	25267194	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25267195	25267322	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25267323	25267524	1	-	2	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25267323	25267524	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25267525	25267626	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25267627	25267778	0.49	-	1	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25267627	25267778	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25267779	25267889	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25267890	25267927	0.46	-	0	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25267890	25267927	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25267928	25268008	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25268009	25268041	0.56	-	0	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25268009	25268041	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25268042	25268123	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25268124	25268191	0.97	-	2	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25268124	25268191	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	intron	25268192	25268390	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	CDS	25268391	25268568	0.99	-	0	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	exon	25268391	25268568	.	-	.	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
Ledus.S1	AUGUSTUS	start_codon	25268566	25268568	.	-	0	transcript_id "Ledus.S1G300600.t1"; gene_id "Ledus.S1G300600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg556.t1 is derived from g7417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3320732	3321100	.	+	.	Ledus.S2G043800
Ledus.S2	AUGUSTUS	transcript	3320732	3321100	.	+	.	transcript_id "Ledus.S2G043800.t1"; gene_id "Ledus.S2G043800"
Ledus.S2	AUGUSTUS	start_codon	3320732	3320734	.	+	0	transcript_id "Ledus.S2G043800.t1"; gene_id "Ledus.S2G043800"
Ledus.S2	AUGUSTUS	CDS	3320732	3321100	0.98	+	0	transcript_id "Ledus.S2G043800.t1"; gene_id "Ledus.S2G043800"
Ledus.S2	AUGUSTUS	exon	3320732	3321100	.	+	.	transcript_id "Ledus.S2G043800.t1"; gene_id "Ledus.S2G043800"
Ledus.S2	AUGUSTUS	stop_codon	3321101	3321103	.	+	0	transcript_id "Ledus.S2G043800.t1"; gene_id "Ledus.S2G043800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11626.t1 is derived from g5244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5622545	5629558	.	-	.	Ledus.S4G078200
Ledus.S4	AUGUSTUS	transcript	5622545	5629558	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	stop_codon	5622542	5622544	.	-	0	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5622545	5622620	0.65	-	1	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5622545	5622620	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5622621	5622729	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5622730	5622783	0.74	-	1	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5622730	5622783	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5622784	5622870	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5622871	5622942	1	-	1	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5622871	5622942	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5622943	5623093	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5623094	5626038	0.82	-	0	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5623094	5626038	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5626039	5626132	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5626133	5626391	1	-	1	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5626133	5626391	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5626392	5626491	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5626492	5626778	0.87	-	0	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5626492	5626778	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5626779	5626889	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5626890	5627225	0.96	-	0	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5626890	5627225	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5627226	5627300	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5627301	5627442	1	-	1	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5627301	5627442	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5627443	5627524	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5627525	5627745	1	-	0	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5627525	5627745	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5627746	5627845	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5627846	5628007	1	-	0	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5627846	5628007	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5628008	5628085	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5628086	5628244	1	-	0	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5628086	5628244	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5628245	5628342	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5628343	5628651	1	-	0	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5628343	5628651	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5628652	5628746	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5628747	5629010	0.82	-	0	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5628747	5629010	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5629011	5629134	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5629135	5629260	0.71	-	0	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5629135	5629260	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	intron	5629261	5629345	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	CDS	5629346	5629558	0.76	-	0	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	exon	5629346	5629558	.	-	.	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
Ledus.S4	AUGUSTUS	start_codon	5629556	5629558	.	-	0	transcript_id "Ledus.S4G078200.t1"; gene_id "Ledus.S4G078200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2033.t1 is derived from g8896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14269260	14270626	.	+	.	Ledus.S2G191500
Ledus.S2	AUGUSTUS	transcript	14269260	14270626	.	+	.	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	start_codon	14269260	14269262	.	+	0	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	CDS	14269260	14269364	0.97	+	0	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	exon	14269260	14269364	.	+	.	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	intron	14269365	14269645	.	+	.	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	CDS	14269646	14269732	1	+	0	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	exon	14269646	14269732	.	+	.	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	intron	14269733	14269826	.	+	.	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	CDS	14269827	14269907	1	+	0	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	exon	14269827	14269907	.	+	.	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	intron	14269908	14270021	.	+	.	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	CDS	14270022	14270192	0.98	+	0	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	exon	14270022	14270192	.	+	.	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	intron	14270193	14270280	.	+	.	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	CDS	14270281	14270445	1	+	0	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	exon	14270281	14270445	.	+	.	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	intron	14270446	14270527	.	+	.	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	CDS	14270528	14270626	1	+	0	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	exon	14270528	14270626	.	+	.	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
Ledus.S2	AUGUSTUS	stop_codon	14270627	14270629	.	+	0	transcript_id "Ledus.S2G191500.t1"; gene_id "Ledus.S2G191500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4468.t1 is derived from g1904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17225313	17225579	.	+	.	Ledus.S1G188900
Ledus.S1	AUGUSTUS	transcript	17225313	17225579	.	+	.	transcript_id "Ledus.S1G188900.t1"; gene_id "Ledus.S1G188900"
Ledus.S1	AUGUSTUS	start_codon	17225313	17225315	.	+	0	transcript_id "Ledus.S1G188900.t1"; gene_id "Ledus.S1G188900"
Ledus.S1	AUGUSTUS	CDS	17225313	17225579	0.79	+	0	transcript_id "Ledus.S1G188900.t1"; gene_id "Ledus.S1G188900"
Ledus.S1	AUGUSTUS	exon	17225313	17225579	.	+	.	transcript_id "Ledus.S1G188900.t1"; gene_id "Ledus.S1G188900"
Ledus.S1	AUGUSTUS	stop_codon	17225580	17225582	.	+	0	transcript_id "Ledus.S1G188900.t1"; gene_id "Ledus.S1G188900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12899.t1 is derived from g4391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	154938	161594	.	-	.	Ledus.C9G000700
Ledus.C9	AUGUSTUS	transcript	154938	161594	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	stop_codon	154935	154937	.	-	0	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	154938	154946	0.35	-	0	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	154938	154946	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	154947	155024	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	155025	155108	0.71	-	0	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	155025	155108	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	155109	155226	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	155227	155278	0.77	-	1	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	155227	155278	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	155279	155412	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	155413	155687	0.82	-	0	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	155413	155687	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	155688	155864	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	155865	156042	1	-	1	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	155865	156042	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	156043	156168	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	156169	156249	1	-	1	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	156169	156249	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	156250	156367	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	156368	156539	1	-	2	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	156368	156539	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	156540	156748	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	156749	156827	1	-	0	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	156749	156827	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	156828	157072	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	157073	157148	1	-	1	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	157073	157148	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	157149	157406	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	157407	157552	0.96	-	0	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	157407	157552	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	157553	157639	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	157640	157704	0.91	-	2	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	157640	157704	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	157705	157931	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	157932	158079	0.98	-	0	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	157932	158079	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	158080	158190	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	158191	158340	0.42	-	0	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	158191	158340	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	158341	158433	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	158434	158541	0.44	-	0	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	158434	158541	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	158542	158675	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	158676	159523	0.95	-	2	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	158676	159523	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	intron	159524	159616	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	CDS	159617	161594	0.96	-	0	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	exon	159617	161594	.	-	.	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
Ledus.C9	AUGUSTUS	start_codon	161592	161594	.	-	0	transcript_id "Ledus.C9G000700.t1"; gene_id "Ledus.C9G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12467.t1 is derived from g6088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12175306	12178704	.	+	.	Ledus.S4G162300
Ledus.S4	AUGUSTUS	transcript	12175306	12178704	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	start_codon	12175306	12175308	.	+	0	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12175306	12175384	0.31	+	0	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12175306	12175384	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	intron	12175385	12175587	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12175588	12175646	0.49	+	2	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12175588	12175646	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	intron	12175647	12175788	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12175789	12175794	0.74	+	0	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12175789	12175794	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	intron	12175795	12175895	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12175896	12176034	0.72	+	0	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12175896	12176034	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	intron	12176035	12176383	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12176384	12177288	1	+	2	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12176384	12177288	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	intron	12177289	12177472	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12177473	12177546	1	+	0	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12177473	12177546	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	intron	12177547	12177629	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12177630	12177684	1	+	1	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12177630	12177684	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	intron	12177685	12177804	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12177805	12177879	0.86	+	0	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12177805	12177879	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	intron	12177880	12177984	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12177985	12178058	0.88	+	0	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12177985	12178058	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	intron	12178059	12178200	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12178201	12178249	1	+	1	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12178201	12178249	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	intron	12178250	12178344	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12178345	12178429	1	+	0	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12178345	12178429	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	intron	12178430	12178512	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12178513	12178569	1	+	2	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12178513	12178569	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	intron	12178570	12178654	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	CDS	12178655	12178704	1	+	2	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	exon	12178655	12178704	.	+	.	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
Ledus.S4	AUGUSTUS	stop_codon	12178705	12178707	.	+	0	transcript_id "Ledus.S4G162300.t1"; gene_id "Ledus.S4G162300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11199.t1 is derived from g4817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2680293	2680499	.	+	.	Ledus.S4G035500
Ledus.S4	AUGUSTUS	transcript	2680293	2680499	.	+	.	transcript_id "Ledus.S4G035500.t1"; gene_id "Ledus.S4G035500"
Ledus.S4	AUGUSTUS	start_codon	2680293	2680295	.	+	0	transcript_id "Ledus.S4G035500.t1"; gene_id "Ledus.S4G035500"
Ledus.S4	AUGUSTUS	CDS	2680293	2680499	0.51	+	0	transcript_id "Ledus.S4G035500.t1"; gene_id "Ledus.S4G035500"
Ledus.S4	AUGUSTUS	exon	2680293	2680499	.	+	.	transcript_id "Ledus.S4G035500.t1"; gene_id "Ledus.S4G035500"
Ledus.S4	AUGUSTUS	stop_codon	2680500	2680502	.	+	0	transcript_id "Ledus.S4G035500.t1"; gene_id "Ledus.S4G035500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6153.t1 is derived from g3596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29297753	29301955	.	+	.	Ledus.S1G357400
Ledus.S1	AUGUSTUS	transcript	29297753	29301955	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	start_codon	29297753	29297755	.	+	0	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	CDS	29297753	29297870	0.64	+	0	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	exon	29297753	29297870	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	intron	29297871	29297962	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	CDS	29297963	29297989	0.83	+	2	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	exon	29297963	29297989	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	intron	29297990	29298075	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	CDS	29298076	29298465	1	+	2	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	exon	29298076	29298465	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	intron	29298466	29298864	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	CDS	29298865	29298986	1	+	2	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	exon	29298865	29298986	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	intron	29298987	29299065	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	CDS	29299066	29299187	1	+	0	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	exon	29299066	29299187	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	intron	29299188	29299278	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	CDS	29299279	29299475	1	+	1	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	exon	29299279	29299475	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	intron	29299476	29299578	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	CDS	29299579	29300072	0.99	+	2	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	exon	29299579	29300072	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	intron	29300073	29300156	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	CDS	29300157	29300300	1	+	0	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	exon	29300157	29300300	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	intron	29300301	29300380	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	CDS	29300381	29300797	1	+	0	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	exon	29300381	29300797	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	intron	29300798	29300897	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	CDS	29300898	29301662	1	+	0	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	exon	29300898	29301662	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	intron	29301663	29301748	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	CDS	29301749	29301955	0.99	+	0	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	exon	29301749	29301955	.	+	.	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
Ledus.S1	AUGUSTUS	stop_codon	29301956	29301958	.	+	0	transcript_id "Ledus.S1G357400.t1"; gene_id "Ledus.S1G357400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2594.t1 is derived from g27.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	188144	190693	.	-	.	Ledus.S1G001500
Ledus.S1	AUGUSTUS	transcript	188144	190693	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	stop_codon	188141	188143	.	-	0	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	CDS	188144	188269	0.96	-	0	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	exon	188144	188269	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	intron	188270	188350	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	CDS	188351	188496	0.99	-	2	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	exon	188351	188496	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	intron	188497	188592	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	CDS	188593	188672	1	-	1	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	exon	188593	188672	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	intron	188673	188756	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	CDS	188757	188846	1	-	1	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	exon	188757	188846	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	intron	188847	188929	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	CDS	188930	189081	0.98	-	0	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	exon	188930	189081	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	intron	189082	189233	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	CDS	189234	189319	1	-	2	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	exon	189234	189319	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	intron	189320	189427	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	CDS	189428	189500	1	-	0	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	exon	189428	189500	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	intron	189501	189609	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	CDS	189610	189756	1	-	0	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	exon	189610	189756	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	intron	189757	189847	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	CDS	189848	190013	1	-	1	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	exon	189848	190013	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	intron	190014	190130	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	CDS	190131	190364	1	-	1	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	exon	190131	190364	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	intron	190365	190451	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	CDS	190452	190693	0.97	-	0	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	exon	190452	190693	.	-	.	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
Ledus.S1	AUGUSTUS	start_codon	190691	190693	.	-	0	transcript_id "Ledus.S1G001500.t1"; gene_id "Ledus.S1G001500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10995.t1 is derived from g4613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1044721	1046295	.	+	.	Ledus.S4G015100
Ledus.S4	AUGUSTUS	transcript	1044721	1046295	.	+	.	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	start_codon	1044721	1044723	.	+	0	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	CDS	1044721	1044957	0.99	+	0	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	exon	1044721	1044957	.	+	.	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	intron	1044958	1045268	.	+	.	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	CDS	1045269	1045457	1	+	0	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	exon	1045269	1045457	.	+	.	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	intron	1045458	1045537	.	+	.	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	CDS	1045538	1045703	1	+	0	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	exon	1045538	1045703	.	+	.	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	intron	1045704	1045822	.	+	.	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	CDS	1045823	1046295	0.99	+	2	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	exon	1045823	1046295	.	+	.	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
Ledus.S4	AUGUSTUS	stop_codon	1046296	1046298	.	+	0	transcript_id "Ledus.S4G015100.t1"; gene_id "Ledus.S4G015100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1239.t1 is derived from g8100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8790183	8791262	.	-	.	Ledus.S2G112100
Ledus.S2	AUGUSTUS	transcript	8790183	8791262	.	-	.	transcript_id "Ledus.S2G112100.t1"; gene_id "Ledus.S2G112100"
Ledus.S2	AUGUSTUS	stop_codon	8790180	8790182	.	-	0	transcript_id "Ledus.S2G112100.t1"; gene_id "Ledus.S2G112100"
Ledus.S2	AUGUSTUS	CDS	8790183	8791262	0.61	-	0	transcript_id "Ledus.S2G112100.t1"; gene_id "Ledus.S2G112100"
Ledus.S2	AUGUSTUS	exon	8790183	8791262	.	-	.	transcript_id "Ledus.S2G112100.t1"; gene_id "Ledus.S2G112100"
Ledus.S2	AUGUSTUS	start_codon	8791260	8791262	.	-	0	transcript_id "Ledus.S2G112100.t1"; gene_id "Ledus.S2G112100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8350.t1 is derived from g13022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10945464	10948016	.	-	.	Ledus.S5G112800
Ledus.S5	AUGUSTUS	transcript	10945464	10948016	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	stop_codon	10945461	10945463	.	-	0	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	CDS	10945464	10945487	0.89	-	0	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	exon	10945464	10945487	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	intron	10945488	10945649	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	CDS	10945650	10945730	1	-	0	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	exon	10945650	10945730	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	intron	10945731	10945842	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	CDS	10945843	10945927	1	-	1	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	exon	10945843	10945927	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	intron	10945928	10946041	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	CDS	10946042	10946173	1	-	1	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	exon	10946042	10946173	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	intron	10946174	10946281	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	CDS	10946282	10946328	1	-	0	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	exon	10946282	10946328	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	intron	10946329	10946530	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	CDS	10946531	10946614	1	-	0	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	exon	10946531	10946614	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	intron	10946615	10946738	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	CDS	10946739	10946829	1	-	1	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	exon	10946739	10946829	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	intron	10946830	10946974	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	CDS	10946975	10947122	1	-	2	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	exon	10946975	10947122	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	intron	10947123	10947298	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	CDS	10947299	10947380	1	-	0	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	exon	10947299	10947380	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	intron	10947381	10947589	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	CDS	10947590	10947668	1	-	1	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	exon	10947590	10947668	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	intron	10947669	10947775	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	CDS	10947776	10947855	0.99	-	0	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	exon	10947776	10947855	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	intron	10947856	10947986	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	CDS	10947987	10948016	1	-	0	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	exon	10947987	10948016	.	-	.	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
Ledus.S5	AUGUSTUS	start_codon	10948014	10948016	.	-	0	transcript_id "Ledus.S5G112800.t1"; gene_id "Ledus.S5G112800"
# This transcript jg12525.t2 is derived from g6146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12526.t1 is derived from g6147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12732618	12733839	.	-	.	Ledus.S4G168200
Ledus.S4	AUGUSTUS	transcript	12732618	12733839	.	-	.	transcript_id "Ledus.S4G168200.t1"; gene_id "Ledus.S4G168200"
Ledus.S4	AUGUSTUS	stop_codon	12732615	12732617	.	-	0	transcript_id "Ledus.S4G168200.t1"; gene_id "Ledus.S4G168200"
Ledus.S4	AUGUSTUS	CDS	12732618	12733367	1	-	0	transcript_id "Ledus.S4G168200.t1"; gene_id "Ledus.S4G168200"
Ledus.S4	AUGUSTUS	exon	12732618	12733367	.	-	.	transcript_id "Ledus.S4G168200.t1"; gene_id "Ledus.S4G168200"
Ledus.S4	AUGUSTUS	intron	12733368	12733459	.	-	.	transcript_id "Ledus.S4G168200.t1"; gene_id "Ledus.S4G168200"
Ledus.S4	AUGUSTUS	CDS	12733460	12733487	1	-	1	transcript_id "Ledus.S4G168200.t1"; gene_id "Ledus.S4G168200"
Ledus.S4	AUGUSTUS	exon	12733460	12733487	.	-	.	transcript_id "Ledus.S4G168200.t1"; gene_id "Ledus.S4G168200"
Ledus.S4	AUGUSTUS	intron	12733488	12733561	.	-	.	transcript_id "Ledus.S4G168200.t1"; gene_id "Ledus.S4G168200"
Ledus.S4	AUGUSTUS	CDS	12733562	12733839	0.99	-	0	transcript_id "Ledus.S4G168200.t1"; gene_id "Ledus.S4G168200"
Ledus.S4	AUGUSTUS	exon	12733562	12733839	.	-	.	transcript_id "Ledus.S4G168200.t1"; gene_id "Ledus.S4G168200"
Ledus.S4	AUGUSTUS	start_codon	12733837	12733839	.	-	0	transcript_id "Ledus.S4G168200.t1"; gene_id "Ledus.S4G168200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6080.t1 is derived from g3523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28838308	28841399	.	+	.	Ledus.S1G350100
Ledus.S1	AUGUSTUS	transcript	28838308	28841399	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	start_codon	28838308	28838310	.	+	0	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	CDS	28838308	28838522	0.74	+	0	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	exon	28838308	28838522	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	intron	28838523	28838764	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	CDS	28838765	28838862	1	+	1	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	exon	28838765	28838862	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	intron	28838863	28838960	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	CDS	28838961	28839044	1	+	2	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	exon	28838961	28839044	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	intron	28839045	28839143	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	CDS	28839144	28839256	1	+	2	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	exon	28839144	28839256	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	intron	28839257	28839467	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	CDS	28839468	28839530	1	+	0	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	exon	28839468	28839530	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	intron	28839531	28839637	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	CDS	28839638	28839739	0.88	+	0	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	exon	28839638	28839739	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	intron	28839740	28839945	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	CDS	28839946	28840486	0.96	+	0	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	exon	28839946	28840486	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	intron	28840487	28840666	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	CDS	28840667	28840872	1	+	2	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	exon	28840667	28840872	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	intron	28840873	28840962	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	CDS	28840963	28841126	1	+	0	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	exon	28840963	28841126	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	intron	28841127	28841233	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	CDS	28841234	28841399	1	+	1	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	exon	28841234	28841399	.	+	.	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
Ledus.S1	AUGUSTUS	stop_codon	28841400	28841402	.	+	0	transcript_id "Ledus.S1G350100.t1"; gene_id "Ledus.S1G350100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12910.t1 is derived from g4402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	295546	296381	.	+	.	Ledus.C9G001800
Ledus.C9	AUGUSTUS	transcript	295546	296381	.	+	.	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	start_codon	295546	295548	.	+	0	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	CDS	295546	295668	1	+	0	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	exon	295546	295668	.	+	.	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	intron	295669	295755	.	+	.	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	CDS	295756	295926	1	+	0	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	exon	295756	295926	.	+	.	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	intron	295927	296017	.	+	.	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	CDS	296018	296071	1	+	0	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	exon	296018	296071	.	+	.	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	intron	296072	296147	.	+	.	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	CDS	296148	296381	1	+	0	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	exon	296148	296381	.	+	.	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
Ledus.C9	AUGUSTUS	stop_codon	296382	296384	.	+	0	transcript_id "Ledus.C9G001800.t1"; gene_id "Ledus.C9G001800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10280.t1 is derived from g11310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13988091	13988603	.	-	.	Ledus.S3G175700
Ledus.S3	AUGUSTUS	transcript	13988091	13988603	.	-	.	transcript_id "Ledus.S3G175700.t1"; gene_id "Ledus.S3G175700"
Ledus.S3	AUGUSTUS	stop_codon	13988088	13988090	.	-	0	transcript_id "Ledus.S3G175700.t1"; gene_id "Ledus.S3G175700"
Ledus.S3	AUGUSTUS	CDS	13988091	13988603	0.7	-	0	transcript_id "Ledus.S3G175700.t1"; gene_id "Ledus.S3G175700"
Ledus.S3	AUGUSTUS	exon	13988091	13988603	.	-	.	transcript_id "Ledus.S3G175700.t1"; gene_id "Ledus.S3G175700"
Ledus.S3	AUGUSTUS	start_codon	13988601	13988603	.	-	0	transcript_id "Ledus.S3G175700.t1"; gene_id "Ledus.S3G175700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7632.t1 is derived from g12303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4602441	4602719	.	-	.	Ledus.S5G041000
Ledus.S5	AUGUSTUS	transcript	4602441	4602719	.	-	.	transcript_id "Ledus.S5G041000.t1"; gene_id "Ledus.S5G041000"
Ledus.S5	AUGUSTUS	stop_codon	4602438	4602440	.	-	0	transcript_id "Ledus.S5G041000.t1"; gene_id "Ledus.S5G041000"
Ledus.S5	AUGUSTUS	CDS	4602441	4602719	0.5	-	0	transcript_id "Ledus.S5G041000.t1"; gene_id "Ledus.S5G041000"
Ledus.S5	AUGUSTUS	exon	4602441	4602719	.	-	.	transcript_id "Ledus.S5G041000.t1"; gene_id "Ledus.S5G041000"
Ledus.S5	AUGUSTUS	start_codon	4602717	4602719	.	-	0	transcript_id "Ledus.S5G041000.t1"; gene_id "Ledus.S5G041000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11918.t1 is derived from g5537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7741516	7742901	.	-	.	Ledus.S4G107400
Ledus.S4	AUGUSTUS	transcript	7741516	7742901	.	-	.	transcript_id "Ledus.S4G107400.t1"; gene_id "Ledus.S4G107400"
Ledus.S4	AUGUSTUS	stop_codon	7741513	7741515	.	-	0	transcript_id "Ledus.S4G107400.t1"; gene_id "Ledus.S4G107400"
Ledus.S4	AUGUSTUS	CDS	7741516	7741548	0.67	-	0	transcript_id "Ledus.S4G107400.t1"; gene_id "Ledus.S4G107400"
Ledus.S4	AUGUSTUS	exon	7741516	7741548	.	-	.	transcript_id "Ledus.S4G107400.t1"; gene_id "Ledus.S4G107400"
Ledus.S4	AUGUSTUS	intron	7741549	7741703	.	-	.	transcript_id "Ledus.S4G107400.t1"; gene_id "Ledus.S4G107400"
Ledus.S4	AUGUSTUS	CDS	7741704	7741782	0.7	-	1	transcript_id "Ledus.S4G107400.t1"; gene_id "Ledus.S4G107400"
Ledus.S4	AUGUSTUS	exon	7741704	7741782	.	-	.	transcript_id "Ledus.S4G107400.t1"; gene_id "Ledus.S4G107400"
Ledus.S4	AUGUSTUS	intron	7741783	7742194	.	-	.	transcript_id "Ledus.S4G107400.t1"; gene_id "Ledus.S4G107400"
Ledus.S4	AUGUSTUS	CDS	7742195	7742901	0.84	-	0	transcript_id "Ledus.S4G107400.t1"; gene_id "Ledus.S4G107400"
Ledus.S4	AUGUSTUS	exon	7742195	7742901	.	-	.	transcript_id "Ledus.S4G107400.t1"; gene_id "Ledus.S4G107400"
Ledus.S4	AUGUSTUS	start_codon	7742899	7742901	.	-	0	transcript_id "Ledus.S4G107400.t1"; gene_id "Ledus.S4G107400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6398.t1 is derived from g3841.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31039409	31040908	.	+	.	Ledus.S1G381900
Ledus.S1	AUGUSTUS	transcript	31039409	31040908	.	+	.	transcript_id "Ledus.S1G381900.t1"; gene_id "Ledus.S1G381900"
Ledus.S1	AUGUSTUS	start_codon	31039409	31039411	.	+	0	transcript_id "Ledus.S1G381900.t1"; gene_id "Ledus.S1G381900"
Ledus.S1	AUGUSTUS	CDS	31039409	31040908	0.85	+	0	transcript_id "Ledus.S1G381900.t1"; gene_id "Ledus.S1G381900"
Ledus.S1	AUGUSTUS	exon	31039409	31040908	.	+	.	transcript_id "Ledus.S1G381900.t1"; gene_id "Ledus.S1G381900"
Ledus.S1	AUGUSTUS	stop_codon	31040909	31040911	.	+	0	transcript_id "Ledus.S1G381900.t1"; gene_id "Ledus.S1G381900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1757.t1 is derived from g8619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12349468	12350453	.	-	.	Ledus.S2G163900
Ledus.S2	AUGUSTUS	transcript	12349468	12350453	.	-	.	transcript_id "Ledus.S2G163900.t1"; gene_id "Ledus.S2G163900"
Ledus.S2	AUGUSTUS	stop_codon	12349465	12349467	.	-	0	transcript_id "Ledus.S2G163900.t1"; gene_id "Ledus.S2G163900"
Ledus.S2	AUGUSTUS	CDS	12349468	12349612	0.89	-	1	transcript_id "Ledus.S2G163900.t1"; gene_id "Ledus.S2G163900"
Ledus.S2	AUGUSTUS	exon	12349468	12349612	.	-	.	transcript_id "Ledus.S2G163900.t1"; gene_id "Ledus.S2G163900"
Ledus.S2	AUGUSTUS	intron	12349613	12349739	.	-	.	transcript_id "Ledus.S2G163900.t1"; gene_id "Ledus.S2G163900"
Ledus.S2	AUGUSTUS	CDS	12349740	12350211	0.24	-	2	transcript_id "Ledus.S2G163900.t1"; gene_id "Ledus.S2G163900"
Ledus.S2	AUGUSTUS	exon	12349740	12350211	.	-	.	transcript_id "Ledus.S2G163900.t1"; gene_id "Ledus.S2G163900"
Ledus.S2	AUGUSTUS	intron	12350212	12350323	.	-	.	transcript_id "Ledus.S2G163900.t1"; gene_id "Ledus.S2G163900"
Ledus.S2	AUGUSTUS	CDS	12350324	12350453	0.48	-	0	transcript_id "Ledus.S2G163900.t1"; gene_id "Ledus.S2G163900"
Ledus.S2	AUGUSTUS	exon	12350324	12350453	.	-	.	transcript_id "Ledus.S2G163900.t1"; gene_id "Ledus.S2G163900"
Ledus.S2	AUGUSTUS	start_codon	12350451	12350453	.	-	0	transcript_id "Ledus.S2G163900.t1"; gene_id "Ledus.S2G163900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7998.t1 is derived from g12669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8406876	8409903	.	-	.	Ledus.S5G077600
Ledus.S5	AUGUSTUS	transcript	8406876	8409903	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	stop_codon	8406873	8406875	.	-	0	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8406876	8407158	0.83	-	1	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8406876	8407158	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8407159	8407343	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8407344	8407370	0.96	-	1	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8407344	8407370	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8407371	8407517	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8407518	8407639	0.58	-	0	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8407518	8407639	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8407640	8407750	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8407751	8407857	0.58	-	2	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8407751	8407857	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8407858	8408004	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8408005	8408083	1	-	0	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8408005	8408083	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8408084	8408163	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8408164	8408286	1	-	0	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8408164	8408286	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8408287	8408381	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8408382	8408630	1	-	0	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8408382	8408630	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8408631	8408816	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8408817	8408966	1	-	0	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8408817	8408966	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8408967	8409066	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8409067	8409379	0.98	-	1	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8409067	8409379	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8409380	8409517	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8409518	8409903	0.82	-	0	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8409518	8409903	.	-	.	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	start_codon	8409901	8409903	.	-	0	transcript_id "Ledus.S5G077600.t1"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	transcript	8406876	8409903	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	stop_codon	8406873	8406875	.	-	0	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8406876	8407158	0.89	-	1	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8406876	8407158	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8407159	8407343	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8407344	8407370	0.88	-	1	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8407344	8407370	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8407371	8407517	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8407518	8407639	0.5	-	0	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8407518	8407639	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8407640	8407750	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8407751	8407857	0.51	-	2	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8407751	8407857	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8407858	8408004	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8408005	8408083	1	-	0	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8408005	8408083	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8408084	8408163	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8408164	8408286	1	-	0	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8408164	8408286	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8408287	8408381	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8408382	8408530	0.93	-	2	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8408382	8408530	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8408531	8408616	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8408617	8408668	0.93	-	0	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8408617	8408668	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8408669	8408816	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8408817	8408966	1	-	0	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8408817	8408966	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8408967	8409066	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8409067	8409379	0.97	-	1	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8409067	8409379	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	intron	8409380	8409517	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	CDS	8409518	8409903	0.86	-	0	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	exon	8409518	8409903	.	-	.	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
Ledus.S5	AUGUSTUS	start_codon	8409901	8409903	.	-	0	transcript_id "Ledus.S5G077600.t2"; gene_id "Ledus.S5G077600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7803.t1 is derived from g12474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6861463	6865261	.	+	.	Ledus.S5G058100
Ledus.S5	AUGUSTUS	transcript	6861463	6865261	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	start_codon	6861463	6861465	.	+	0	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	CDS	6861463	6861602	0.21	+	0	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	exon	6861463	6861602	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	intron	6861603	6861689	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	CDS	6861690	6861753	0.7	+	1	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	exon	6861690	6861753	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	intron	6861754	6861906	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	CDS	6861907	6862107	0.94	+	0	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	exon	6861907	6862107	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	intron	6862108	6862319	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	CDS	6862320	6862610	1	+	0	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	exon	6862320	6862610	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	intron	6862611	6862864	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	CDS	6862865	6863201	1	+	0	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	exon	6862865	6863201	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	intron	6863202	6863348	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	CDS	6863349	6863683	1	+	2	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	exon	6863349	6863683	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	intron	6863684	6863806	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	CDS	6863807	6864054	1	+	0	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	exon	6863807	6864054	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	intron	6864055	6864193	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	CDS	6864194	6864815	1	+	1	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	exon	6864194	6864815	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	intron	6864816	6864905	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	CDS	6864906	6865019	1	+	0	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	exon	6864906	6865019	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	intron	6865020	6865126	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	CDS	6865127	6865261	0.95	+	0	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	exon	6865127	6865261	.	+	.	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
Ledus.S5	AUGUSTUS	stop_codon	6865262	6865264	.	+	0	transcript_id "Ledus.S5G058100.t1"; gene_id "Ledus.S5G058100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1636.t1 is derived from g8497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11504342	11506140	.	+	.	Ledus.S2G151800
Ledus.S2	AUGUSTUS	transcript	11504342	11506140	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	start_codon	11504342	11504344	.	+	0	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	CDS	11504342	11504467	0.83	+	0	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	exon	11504342	11504467	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	intron	11504468	11504671	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	CDS	11504672	11504782	1	+	0	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	exon	11504672	11504782	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	intron	11504783	11504895	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	CDS	11504896	11504997	1	+	0	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	exon	11504896	11504997	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	intron	11504998	11505118	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	CDS	11505119	11505220	1	+	0	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	exon	11505119	11505220	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	intron	11505221	11505351	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	CDS	11505352	11505467	1	+	0	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	exon	11505352	11505467	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	intron	11505468	11505599	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	CDS	11505600	11505678	1	+	1	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	exon	11505600	11505678	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	intron	11505679	11505778	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	CDS	11505779	11505949	1	+	0	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	exon	11505779	11505949	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	intron	11505950	11506062	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	CDS	11506063	11506140	1	+	0	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	exon	11506063	11506140	.	+	.	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
Ledus.S2	AUGUSTUS	stop_codon	11506141	11506143	.	+	0	transcript_id "Ledus.S2G151800.t1"; gene_id "Ledus.S2G151800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg767.t1 is derived from g7628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4891599	4892785	.	+	.	Ledus.S2G064900
Ledus.S2	AUGUSTUS	transcript	4891599	4892785	.	+	.	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	start_codon	4891599	4891601	.	+	0	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	CDS	4891599	4891721	0.85	+	0	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	exon	4891599	4891721	.	+	.	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	intron	4891722	4891933	.	+	.	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	CDS	4891934	4892378	1	+	0	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	exon	4891934	4892378	.	+	.	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	intron	4892379	4892501	.	+	.	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	CDS	4892502	4892611	1	+	2	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	exon	4892502	4892611	.	+	.	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	intron	4892612	4892761	.	+	.	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	CDS	4892762	4892785	1	+	0	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	exon	4892762	4892785	.	+	.	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
Ledus.S2	AUGUSTUS	stop_codon	4892786	4892788	.	+	0	transcript_id "Ledus.S2G064900.t1"; gene_id "Ledus.S2G064900"
# This transcript jg11112.t1 is derived from g4729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1908080	1909563	.	-	.	Ledus.S4G026700
Ledus.S4	AUGUSTUS	transcript	1908080	1909120	.	-	.	transcript_id "Ledus.S4G026700.t1"; gene_id "Ledus.S4G026700"
Ledus.S4	AUGUSTUS	stop_codon	1908077	1908079	.	-	0	transcript_id "Ledus.S4G026700.t1"; gene_id "Ledus.S4G026700"
Ledus.S4	AUGUSTUS	CDS	1908080	1909120	0.93	-	0	transcript_id "Ledus.S4G026700.t1"; gene_id "Ledus.S4G026700"
Ledus.S4	AUGUSTUS	exon	1908080	1909120	.	-	.	transcript_id "Ledus.S4G026700.t1"; gene_id "Ledus.S4G026700"
Ledus.S4	AUGUSTUS	start_codon	1909118	1909120	.	-	0	transcript_id "Ledus.S4G026700.t1"; gene_id "Ledus.S4G026700"
Ledus.S4	AUGUSTUS	transcript	1908080	1909563	.	-	.	transcript_id "Ledus.S4G026700.t2"; gene_id "Ledus.S4G026700"
Ledus.S4	AUGUSTUS	stop_codon	1908077	1908079	.	-	0	transcript_id "Ledus.S4G026700.t2"; gene_id "Ledus.S4G026700"
Ledus.S4	AUGUSTUS	CDS	1908080	1909126	0.35	-	0	transcript_id "Ledus.S4G026700.t2"; gene_id "Ledus.S4G026700"
Ledus.S4	AUGUSTUS	exon	1908080	1909126	.	-	.	transcript_id "Ledus.S4G026700.t2"; gene_id "Ledus.S4G026700"
Ledus.S4	AUGUSTUS	intron	1909127	1909188	.	-	.	transcript_id "Ledus.S4G026700.t2"; gene_id "Ledus.S4G026700"
Ledus.S4	AUGUSTUS	CDS	1909189	1909563	0.39	-	0	transcript_id "Ledus.S4G026700.t2"; gene_id "Ledus.S4G026700"
Ledus.S4	AUGUSTUS	exon	1909189	1909563	.	-	.	transcript_id "Ledus.S4G026700.t2"; gene_id "Ledus.S4G026700"
Ledus.S4	AUGUSTUS	start_codon	1909561	1909563	.	-	0	transcript_id "Ledus.S4G026700.t2"; gene_id "Ledus.S4G026700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6613.t1 is derived from g4056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32736801	32737550	.	-	.	Ledus.S1G403400
Ledus.S1	AUGUSTUS	transcript	32736801	32737550	.	-	.	transcript_id "Ledus.S1G403400.t1"; gene_id "Ledus.S1G403400"
Ledus.S1	AUGUSTUS	stop_codon	32736798	32736800	.	-	0	transcript_id "Ledus.S1G403400.t1"; gene_id "Ledus.S1G403400"
Ledus.S1	AUGUSTUS	CDS	32736801	32737550	0.95	-	0	transcript_id "Ledus.S1G403400.t1"; gene_id "Ledus.S1G403400"
Ledus.S1	AUGUSTUS	exon	32736801	32737550	.	-	.	transcript_id "Ledus.S1G403400.t1"; gene_id "Ledus.S1G403400"
Ledus.S1	AUGUSTUS	start_codon	32737548	32737550	.	-	0	transcript_id "Ledus.S1G403400.t1"; gene_id "Ledus.S1G403400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7439.t1 is derived from g12110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2687617	2691912	.	-	.	Ledus.S5G021700
Ledus.S5	AUGUSTUS	transcript	2687617	2691912	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	stop_codon	2687614	2687616	.	-	0	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	CDS	2687617	2687711	1	-	2	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	exon	2687617	2687711	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	intron	2687712	2687798	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	CDS	2687799	2687882	1	-	2	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	exon	2687799	2687882	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	intron	2687883	2687974	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	CDS	2687975	2688053	1	-	0	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	exon	2687975	2688053	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	intron	2688054	2688248	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	CDS	2688249	2690501	0.97	-	0	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	exon	2688249	2690501	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	intron	2690502	2690770	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	CDS	2690771	2691311	0.99	-	1	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	exon	2690771	2691311	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	intron	2691312	2691444	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	CDS	2691445	2691541	1	-	2	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	exon	2691445	2691541	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	intron	2691542	2691887	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	CDS	2691888	2691912	0.75	-	0	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	exon	2691888	2691912	.	-	.	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
Ledus.S5	AUGUSTUS	start_codon	2691910	2691912	.	-	0	transcript_id "Ledus.S5G021700.t1"; gene_id "Ledus.S5G021700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11844.t1 is derived from g5463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7273814	7277703	.	+	.	Ledus.S4G100000
Ledus.S4	AUGUSTUS	transcript	7273814	7277703	.	+	.	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	start_codon	7273814	7273816	.	+	0	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	CDS	7273814	7273979	0.81	+	0	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	exon	7273814	7273979	.	+	.	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	intron	7273980	7274063	.	+	.	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	CDS	7274064	7275553	0.67	+	2	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	exon	7274064	7275553	.	+	.	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	intron	7275554	7275636	.	+	.	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	CDS	7275637	7275789	1	+	0	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	exon	7275637	7275789	.	+	.	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	intron	7275790	7275924	.	+	.	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	CDS	7275925	7277703	0.99	+	0	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	exon	7275925	7277703	.	+	.	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
Ledus.S4	AUGUSTUS	stop_codon	7277704	7277706	.	+	0	transcript_id "Ledus.S4G100000.t1"; gene_id "Ledus.S4G100000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg337.t1 is derived from g7198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1808674	1814816	.	+	.	Ledus.S2G021900
Ledus.S2	AUGUSTUS	transcript	1808674	1814816	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	start_codon	1808674	1808676	.	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1808674	1808817	0.85	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1808674	1808817	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1808818	1808969	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1808970	1809116	0.73	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1808970	1809116	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1809117	1809224	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1809225	1809315	1	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1809225	1809315	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1809316	1809471	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1809472	1809590	1	+	2	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1809472	1809590	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1809591	1809734	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1809735	1809925	0.97	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1809735	1809925	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1809926	1810037	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1810038	1810248	0.8	+	1	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1810038	1810248	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1810249	1810399	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1810400	1810646	0.81	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1810400	1810646	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1810647	1810766	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1810767	1811323	0.99	+	2	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1810767	1811323	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1811324	1811506	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1811507	1811573	1	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1811507	1811573	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1811574	1811662	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1811663	1811728	1	+	2	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1811663	1811728	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1811729	1811914	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1811915	1812126	1	+	2	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1811915	1812126	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1812127	1812252	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1812253	1812620	0.78	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1812253	1812620	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1812621	1812742	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1812743	1812848	0.74	+	1	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1812743	1812848	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1812849	1813024	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1813025	1813243	1	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1813025	1813243	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1813244	1813320	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1813321	1813560	1	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1813321	1813560	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1813561	1813703	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1813704	1813913	1	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1813704	1813913	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1813914	1814000	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1814001	1814249	0.91	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1814001	1814249	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1814250	1814352	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1814353	1814556	1	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1814353	1814556	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	intron	1814557	1814639	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	CDS	1814640	1814816	0.97	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	exon	1814640	1814816	.	+	.	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
Ledus.S2	AUGUSTUS	stop_codon	1814817	1814819	.	+	0	transcript_id "Ledus.S2G021900.t1"; gene_id "Ledus.S2G021900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6172.t1 is derived from g3615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29388903	29390622	.	+	.	Ledus.S1G359300
Ledus.S1	AUGUSTUS	transcript	29388903	29390622	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	start_codon	29388903	29388905	.	+	0	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	CDS	29388903	29389037	0.56	+	0	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	exon	29388903	29389037	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	intron	29389038	29389149	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	CDS	29389150	29389190	1	+	0	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	exon	29389150	29389190	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	intron	29389191	29389298	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	CDS	29389299	29389362	1	+	1	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	exon	29389299	29389362	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	intron	29389363	29389487	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	CDS	29389488	29389646	1	+	0	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	exon	29389488	29389646	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	intron	29389647	29389758	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	CDS	29389759	29389830	1	+	0	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	exon	29389759	29389830	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	intron	29389831	29389926	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	CDS	29389927	29390108	1	+	0	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	exon	29389927	29390108	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	intron	29390109	29390336	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	CDS	29390337	29390359	1	+	1	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	exon	29390337	29390359	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	intron	29390360	29390527	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	CDS	29390528	29390622	1	+	2	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	exon	29390528	29390622	.	+	.	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
Ledus.S1	AUGUSTUS	stop_codon	29390623	29390625	.	+	0	transcript_id "Ledus.S1G359300.t1"; gene_id "Ledus.S1G359300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10372.t1 is derived from g11402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14579614	14580491	.	-	.	Ledus.S3G184900
Ledus.S3	AUGUSTUS	transcript	14579614	14580491	.	-	.	transcript_id "Ledus.S3G184900.t1"; gene_id "Ledus.S3G184900"
Ledus.S3	AUGUSTUS	stop_codon	14579611	14579613	.	-	0	transcript_id "Ledus.S3G184900.t1"; gene_id "Ledus.S3G184900"
Ledus.S3	AUGUSTUS	CDS	14579614	14579687	1	-	2	transcript_id "Ledus.S3G184900.t1"; gene_id "Ledus.S3G184900"
Ledus.S3	AUGUSTUS	exon	14579614	14579687	.	-	.	transcript_id "Ledus.S3G184900.t1"; gene_id "Ledus.S3G184900"
Ledus.S3	AUGUSTUS	intron	14579688	14580319	.	-	.	transcript_id "Ledus.S3G184900.t1"; gene_id "Ledus.S3G184900"
Ledus.S3	AUGUSTUS	CDS	14580320	14580491	0.43	-	0	transcript_id "Ledus.S3G184900.t1"; gene_id "Ledus.S3G184900"
Ledus.S3	AUGUSTUS	exon	14580320	14580491	.	-	.	transcript_id "Ledus.S3G184900.t1"; gene_id "Ledus.S3G184900"
Ledus.S3	AUGUSTUS	start_codon	14580489	14580491	.	-	0	transcript_id "Ledus.S3G184900.t1"; gene_id "Ledus.S3G184900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7002.t1 is derived from g6533.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	740720	743665	.	-	.	Ledus.C7G006300
Ledus.C7	AUGUSTUS	transcript	740720	743665	.	-	.	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	stop_codon	740717	740719	.	-	0	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	CDS	740720	740932	1	-	0	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	exon	740720	740932	.	-	.	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	intron	740933	741285	.	-	.	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	CDS	741286	741321	0.89	-	0	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	exon	741286	741321	.	-	.	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	intron	741322	741553	.	-	.	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	CDS	741554	741995	1	-	1	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	exon	741554	741995	.	-	.	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	intron	741996	742123	.	-	.	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	CDS	742124	742314	1	-	0	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	exon	742124	742314	.	-	.	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	intron	742315	742512	.	-	.	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	CDS	742513	742590	1	-	0	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	exon	742513	742590	.	-	.	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	intron	742591	742792	.	-	.	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	CDS	742793	743665	0.95	-	0	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	exon	742793	743665	.	-	.	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
Ledus.C7	AUGUSTUS	start_codon	743663	743665	.	-	0	transcript_id "Ledus.C7G006300.t1"; gene_id "Ledus.C7G006300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6633.t1 is derived from g4076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32802367	32803303	.	+	.	Ledus.S1G405400
Ledus.S1	AUGUSTUS	transcript	32802367	32803303	.	+	.	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	start_codon	32802367	32802369	.	+	0	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	CDS	32802367	32802399	0.67	+	0	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	exon	32802367	32802399	.	+	.	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	intron	32802400	32802602	.	+	.	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	CDS	32802603	32802644	1	+	0	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	exon	32802603	32802644	.	+	.	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	intron	32802645	32802743	.	+	.	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	CDS	32802744	32802914	1	+	0	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	exon	32802744	32802914	.	+	.	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	intron	32802915	32803080	.	+	.	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	CDS	32803081	32803167	1	+	0	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	exon	32803081	32803167	.	+	.	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	intron	32803168	32803258	.	+	.	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	CDS	32803259	32803303	1	+	0	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	exon	32803259	32803303	.	+	.	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
Ledus.S1	AUGUSTUS	stop_codon	32803304	32803306	.	+	0	transcript_id "Ledus.S1G405400.t1"; gene_id "Ledus.S1G405400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8561.t1 is derived from g9591.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	180053	184181	.	-	.	Ledus.S3G003800
Ledus.S3	AUGUSTUS	transcript	180053	184181	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	stop_codon	180050	180052	.	-	0	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	180053	180223	0.95	-	0	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	180053	180223	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	180224	180364	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	180365	180460	1	-	0	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	180365	180460	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	180461	180559	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	180560	180970	0.97	-	0	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	180560	180970	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	180971	181099	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	181100	181219	1	-	0	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	181100	181219	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	181220	181328	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	181329	181401	1	-	1	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	181329	181401	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	181402	181512	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	181513	181585	1	-	2	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	181513	181585	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	181586	181732	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	181733	181955	1	-	0	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	181733	181955	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	181956	182093	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	182094	182291	0.88	-	0	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	182094	182291	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	182292	182398	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	182399	182660	0.26	-	1	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	182399	182660	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	182661	182799	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	182800	182911	1	-	2	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	182800	182911	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	182912	183003	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	183004	183122	1	-	1	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	183004	183122	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	183123	183222	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	183223	183312	1	-	1	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	183223	183312	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	183313	183394	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	183395	183532	0.55	-	1	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	183395	183532	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	183533	183626	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	183627	183670	1	-	0	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	183627	183670	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	183671	183852	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	183853	183970	1	-	1	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	183853	183970	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	183971	184062	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	184063	184181	1	-	0	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	184063	184181	.	-	.	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	start_codon	184179	184181	.	-	0	transcript_id "Ledus.S3G003800.t1"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	transcript	180053	184181	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	stop_codon	180050	180052	.	-	0	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	180053	180223	0.94	-	0	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	180053	180223	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	180224	180364	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	180365	180460	1	-	0	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	180365	180460	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	180461	180559	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	180560	180970	0.97	-	0	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	180560	180970	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	180971	181099	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	181100	181219	1	-	0	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	181100	181219	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	181220	181328	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	181329	181401	1	-	1	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	181329	181401	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	181402	181512	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	181513	181585	1	-	2	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	181513	181585	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	181586	181732	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	181733	181918	0.41	-	2	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	181733	181918	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	181919	181997	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	181998	182004	0.45	-	0	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	181998	182004	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	182005	182093	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	182094	182291	0.8	-	0	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	182094	182291	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	182292	182398	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	182399	182660	0.31	-	1	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	182399	182660	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	182661	182799	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	182800	182911	0.98	-	2	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	182800	182911	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	182912	183003	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	183004	183122	1	-	1	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	183004	183122	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	183123	183222	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	183223	183312	1	-	1	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	183223	183312	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	183313	183394	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	183395	183532	0.57	-	1	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	183395	183532	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	183533	183626	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	183627	183670	1	-	0	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	183627	183670	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	183671	183852	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	183853	183970	1	-	1	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	183853	183970	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	intron	183971	184062	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	CDS	184063	184181	1	-	0	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	exon	184063	184181	.	-	.	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
Ledus.S3	AUGUSTUS	start_codon	184179	184181	.	-	0	transcript_id "Ledus.S3G003800.t2"; gene_id "Ledus.S3G003800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11461.t1 is derived from g5079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4463789	4466205	.	+	.	Ledus.S4G061700
Ledus.S4	AUGUSTUS	transcript	4463789	4466205	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	start_codon	4463789	4463791	.	+	0	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	CDS	4463789	4464007	0.96	+	0	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	exon	4463789	4464007	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	intron	4464008	4464110	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	CDS	4464111	4464195	1	+	0	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	exon	4464111	4464195	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	intron	4464196	4464282	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	CDS	4464283	4464429	1	+	2	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	exon	4464283	4464429	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	intron	4464430	4464579	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	CDS	4464580	4464693	0.8	+	2	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	exon	4464580	4464693	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	intron	4464694	4464809	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	CDS	4464810	4464907	0.69	+	2	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	exon	4464810	4464907	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	intron	4464908	4465017	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	CDS	4465018	4465097	0.81	+	0	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	exon	4465018	4465097	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	intron	4465098	4465220	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	CDS	4465221	4465326	0.99	+	1	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	exon	4465221	4465326	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	intron	4465327	4465439	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	CDS	4465440	4465567	1	+	0	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	exon	4465440	4465567	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	intron	4465568	4465699	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	CDS	4465700	4465874	1	+	1	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	exon	4465700	4465874	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	intron	4465875	4465972	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	CDS	4465973	4466029	1	+	0	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	exon	4465973	4466029	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	intron	4466030	4466124	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	CDS	4466125	4466205	1	+	0	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	exon	4466125	4466205	.	+	.	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
Ledus.S4	AUGUSTUS	stop_codon	4466206	4466208	.	+	0	transcript_id "Ledus.S4G061700.t1"; gene_id "Ledus.S4G061700"
# This transcript jg11320.t2 is derived from g4938.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11321.t1 is derived from g4939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3581613	3583644	.	+	.	Ledus.S4G047700
Ledus.S4	AUGUSTUS	transcript	3581613	3583644	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	start_codon	3581613	3581615	.	+	0	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	CDS	3581613	3581639	0.9	+	0	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	exon	3581613	3581639	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	intron	3581640	3581722	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	CDS	3581723	3581863	1	+	0	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	exon	3581723	3581863	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	intron	3581864	3581991	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	CDS	3581992	3582083	1	+	0	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	exon	3581992	3582083	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	intron	3582084	3582215	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	CDS	3582216	3582297	1	+	1	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	exon	3582216	3582297	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	intron	3582298	3582413	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	CDS	3582414	3582442	1	+	0	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	exon	3582414	3582442	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	intron	3582443	3582552	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	CDS	3582553	3582646	1	+	1	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	exon	3582553	3582646	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	intron	3582647	3582836	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	CDS	3582837	3583122	1	+	0	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	exon	3582837	3583122	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	intron	3583123	3583204	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	CDS	3583205	3583644	1	+	2	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	exon	3583205	3583644	.	+	.	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
Ledus.S4	AUGUSTUS	stop_codon	3583645	3583647	.	+	0	transcript_id "Ledus.S4G047700.t1"; gene_id "Ledus.S4G047700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7443.t1 is derived from g12114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2716090	2717505	.	+	.	Ledus.S5G022100
Ledus.S5	AUGUSTUS	transcript	2716090	2717505	.	+	.	transcript_id "Ledus.S5G022100.t1"; gene_id "Ledus.S5G022100"
Ledus.S5	AUGUSTUS	start_codon	2716090	2716092	.	+	0	transcript_id "Ledus.S5G022100.t1"; gene_id "Ledus.S5G022100"
Ledus.S5	AUGUSTUS	CDS	2716090	2716141	0.82	+	0	transcript_id "Ledus.S5G022100.t1"; gene_id "Ledus.S5G022100"
Ledus.S5	AUGUSTUS	exon	2716090	2716141	.	+	.	transcript_id "Ledus.S5G022100.t1"; gene_id "Ledus.S5G022100"
Ledus.S5	AUGUSTUS	intron	2716142	2716224	.	+	.	transcript_id "Ledus.S5G022100.t1"; gene_id "Ledus.S5G022100"
Ledus.S5	AUGUSTUS	CDS	2716225	2716272	0.8	+	2	transcript_id "Ledus.S5G022100.t1"; gene_id "Ledus.S5G022100"
Ledus.S5	AUGUSTUS	exon	2716225	2716272	.	+	.	transcript_id "Ledus.S5G022100.t1"; gene_id "Ledus.S5G022100"
Ledus.S5	AUGUSTUS	intron	2716273	2716786	.	+	.	transcript_id "Ledus.S5G022100.t1"; gene_id "Ledus.S5G022100"
Ledus.S5	AUGUSTUS	CDS	2716787	2717505	0.79	+	2	transcript_id "Ledus.S5G022100.t1"; gene_id "Ledus.S5G022100"
Ledus.S5	AUGUSTUS	exon	2716787	2717505	.	+	.	transcript_id "Ledus.S5G022100.t1"; gene_id "Ledus.S5G022100"
Ledus.S5	AUGUSTUS	stop_codon	2717506	2717508	.	+	0	transcript_id "Ledus.S5G022100.t1"; gene_id "Ledus.S5G022100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10390.t1 is derived from g11420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14735857	14736426	.	+	.	Ledus.S3G186700
Ledus.S3	AUGUSTUS	transcript	14735857	14736426	.	+	.	transcript_id "Ledus.S3G186700.t1"; gene_id "Ledus.S3G186700"
Ledus.S3	AUGUSTUS	start_codon	14735857	14735859	.	+	0	transcript_id "Ledus.S3G186700.t1"; gene_id "Ledus.S3G186700"
Ledus.S3	AUGUSTUS	CDS	14735857	14736144	0.38	+	0	transcript_id "Ledus.S3G186700.t1"; gene_id "Ledus.S3G186700"
Ledus.S3	AUGUSTUS	exon	14735857	14736144	.	+	.	transcript_id "Ledus.S3G186700.t1"; gene_id "Ledus.S3G186700"
Ledus.S3	AUGUSTUS	intron	14736145	14736303	.	+	.	transcript_id "Ledus.S3G186700.t1"; gene_id "Ledus.S3G186700"
Ledus.S3	AUGUSTUS	CDS	14736304	14736426	0.42	+	0	transcript_id "Ledus.S3G186700.t1"; gene_id "Ledus.S3G186700"
Ledus.S3	AUGUSTUS	exon	14736304	14736426	.	+	.	transcript_id "Ledus.S3G186700.t1"; gene_id "Ledus.S3G186700"
Ledus.S3	AUGUSTUS	stop_codon	14736427	14736429	.	+	0	transcript_id "Ledus.S3G186700.t1"; gene_id "Ledus.S3G186700"
# This transcript jg5195.t2 is derived from g2634.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5196.t1 is derived from g2635.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22421564	22423736	.	+	.	Ledus.S1G261700
Ledus.S1	AUGUSTUS	transcript	22421564	22423736	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	start_codon	22421564	22421566	.	+	0	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22421564	22421650	0.97	+	0	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22421564	22421650	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22421651	22421885	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22421886	22421892	0.99	+	0	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22421886	22421892	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22421893	22421988	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22421989	22422134	0.99	+	2	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22421989	22422134	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22422135	22422399	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22422400	22422480	1	+	0	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22422400	22422480	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22422481	22422639	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22422640	22422701	0.98	+	0	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22422640	22422701	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22422702	22422816	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22422817	22423178	1	+	1	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22422817	22423178	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22423179	22423313	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22423314	22423528	1	+	2	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22423314	22423528	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22423529	22423682	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22423683	22423736	1	+	0	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22423683	22423736	.	+	.	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	stop_codon	22423737	22423739	.	+	0	transcript_id "Ledus.S1G261700.t1"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	transcript	22421564	22423736	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	start_codon	22421564	22421566	.	+	0	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22421564	22421650	0.38	+	0	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22421564	22421650	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22421651	22421885	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22421886	22421892	0.39	+	0	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22421886	22421892	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22421893	22421991	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22421992	22422134	0.39	+	2	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22421992	22422134	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22422135	22422399	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22422400	22422480	1	+	0	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22422400	22422480	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22422481	22422639	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22422640	22422701	0.97	+	0	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22422640	22422701	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22422702	22422816	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22422817	22423178	1	+	1	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22422817	22423178	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22423179	22423313	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22423314	22423528	1	+	2	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22423314	22423528	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	intron	22423529	22423682	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	CDS	22423683	22423736	1	+	0	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	exon	22423683	22423736	.	+	.	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
Ledus.S1	AUGUSTUS	stop_codon	22423737	22423739	.	+	0	transcript_id "Ledus.S1G261700.t2"; gene_id "Ledus.S1G261700"
# This transcript jg1092.t2 is derived from g7953.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1093.t1 is derived from g7954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7474136	7478279	.	+	.	Ledus.S2G097500
Ledus.S2	AUGUSTUS	transcript	7474136	7478279	.	+	.	transcript_id "Ledus.S2G097500.t1"; gene_id "Ledus.S2G097500"
Ledus.S2	AUGUSTUS	start_codon	7474136	7474138	.	+	0	transcript_id "Ledus.S2G097500.t1"; gene_id "Ledus.S2G097500"
Ledus.S2	AUGUSTUS	CDS	7474136	7474295	1	+	0	transcript_id "Ledus.S2G097500.t1"; gene_id "Ledus.S2G097500"
Ledus.S2	AUGUSTUS	exon	7474136	7474295	.	+	.	transcript_id "Ledus.S2G097500.t1"; gene_id "Ledus.S2G097500"
Ledus.S2	AUGUSTUS	intron	7474296	7474374	.	+	.	transcript_id "Ledus.S2G097500.t1"; gene_id "Ledus.S2G097500"
Ledus.S2	AUGUSTUS	CDS	7474375	7474448	1	+	2	transcript_id "Ledus.S2G097500.t1"; gene_id "Ledus.S2G097500"
Ledus.S2	AUGUSTUS	exon	7474375	7474448	.	+	.	transcript_id "Ledus.S2G097500.t1"; gene_id "Ledus.S2G097500"
Ledus.S2	AUGUSTUS	intron	7474449	7474523	.	+	.	transcript_id "Ledus.S2G097500.t1"; gene_id "Ledus.S2G097500"
Ledus.S2	AUGUSTUS	CDS	7474524	7478279	1	+	0	transcript_id "Ledus.S2G097500.t1"; gene_id "Ledus.S2G097500"
Ledus.S2	AUGUSTUS	exon	7474524	7478279	.	+	.	transcript_id "Ledus.S2G097500.t1"; gene_id "Ledus.S2G097500"
Ledus.S2	AUGUSTUS	stop_codon	7478280	7478282	.	+	0	transcript_id "Ledus.S2G097500.t1"; gene_id "Ledus.S2G097500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg39.t1 is derived from g9551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C12	AUGUSTUS	gene	251437	251783	.	+	.	Ledus.C12G001000
Ledus.C12	AUGUSTUS	transcript	251437	251783	.	+	.	transcript_id "Ledus.C12G001000.t1"; gene_id "Ledus.C12G001000"
Ledus.C12	AUGUSTUS	start_codon	251437	251439	.	+	0	transcript_id "Ledus.C12G001000.t1"; gene_id "Ledus.C12G001000"
Ledus.C12	AUGUSTUS	CDS	251437	251443	0.88	+	0	transcript_id "Ledus.C12G001000.t1"; gene_id "Ledus.C12G001000"
Ledus.C12	AUGUSTUS	exon	251437	251443	.	+	.	transcript_id "Ledus.C12G001000.t1"; gene_id "Ledus.C12G001000"
Ledus.C12	AUGUSTUS	intron	251444	251547	.	+	.	transcript_id "Ledus.C12G001000.t1"; gene_id "Ledus.C12G001000"
Ledus.C12	AUGUSTUS	CDS	251548	251783	0.46	+	2	transcript_id "Ledus.C12G001000.t1"; gene_id "Ledus.C12G001000"
Ledus.C12	AUGUSTUS	exon	251548	251783	.	+	.	transcript_id "Ledus.C12G001000.t1"; gene_id "Ledus.C12G001000"
Ledus.C12	AUGUSTUS	stop_codon	251784	251786	.	+	0	transcript_id "Ledus.C12G001000.t1"; gene_id "Ledus.C12G001000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9930.t1 is derived from g10960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11261151	11261723	.	+	.	Ledus.S3G140700
Ledus.S3	AUGUSTUS	transcript	11261151	11261723	.	+	.	transcript_id "Ledus.S3G140700.t1"; gene_id "Ledus.S3G140700"
Ledus.S3	AUGUSTUS	start_codon	11261151	11261153	.	+	0	transcript_id "Ledus.S3G140700.t1"; gene_id "Ledus.S3G140700"
Ledus.S3	AUGUSTUS	CDS	11261151	11261723	0.33	+	0	transcript_id "Ledus.S3G140700.t1"; gene_id "Ledus.S3G140700"
Ledus.S3	AUGUSTUS	exon	11261151	11261723	.	+	.	transcript_id "Ledus.S3G140700.t1"; gene_id "Ledus.S3G140700"
Ledus.S3	AUGUSTUS	stop_codon	11261724	11261726	.	+	0	transcript_id "Ledus.S3G140700.t1"; gene_id "Ledus.S3G140700"
# This transcript jg8555.t2 is derived from g9585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8556.t1 is derived from g9586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	158586	160592	.	+	.	Ledus.S3G003300
Ledus.S3	AUGUSTUS	transcript	158586	160592	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	start_codon	158586	158588	.	+	0	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	CDS	158586	158750	0.91	+	0	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	exon	158586	158750	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	intron	158751	158857	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	CDS	158858	159158	0.92	+	0	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	exon	158858	159158	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	intron	159159	159233	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	CDS	159234	159484	1	+	2	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	exon	159234	159484	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	intron	159485	159628	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	CDS	159629	159741	1	+	0	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	exon	159629	159741	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	intron	159742	159997	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	CDS	159998	160145	1	+	1	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	exon	159998	160145	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	intron	160146	160301	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	CDS	160302	160439	1	+	0	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	exon	160302	160439	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	intron	160440	160517	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	CDS	160518	160592	0.99	+	0	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	exon	160518	160592	.	+	.	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
Ledus.S3	AUGUSTUS	stop_codon	160593	160595	.	+	0	transcript_id "Ledus.S3G003300.t1"; gene_id "Ledus.S3G003300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7881.t1 is derived from g12552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7601733	7605465	.	-	.	Ledus.S5G065900
Ledus.S5	AUGUSTUS	transcript	7601733	7605465	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	stop_codon	7601730	7601732	.	-	0	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	CDS	7601733	7601752	0.93	-	2	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	exon	7601733	7601752	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	intron	7601753	7601906	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	CDS	7601907	7601927	0.95	-	2	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	exon	7601907	7601927	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	intron	7601928	7602105	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	CDS	7602106	7602139	0.94	-	0	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	exon	7602106	7602139	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	intron	7602140	7602342	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	CDS	7602343	7602424	0.91	-	1	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	exon	7602343	7602424	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	intron	7602425	7602528	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	CDS	7602529	7602665	1	-	0	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	exon	7602529	7602665	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	intron	7602666	7602803	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	CDS	7602804	7602992	1	-	0	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	exon	7602804	7602992	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	intron	7602993	7603081	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	CDS	7603082	7603624	1	-	0	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	exon	7603082	7603624	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	intron	7603625	7603772	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	CDS	7603773	7604811	1	-	1	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	exon	7603773	7604811	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	intron	7604812	7605085	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	CDS	7605086	7605183	1	-	0	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	exon	7605086	7605183	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	intron	7605184	7605291	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	CDS	7605292	7605465	0.99	-	0	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	exon	7605292	7605465	.	-	.	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
Ledus.S5	AUGUSTUS	start_codon	7605463	7605465	.	-	0	transcript_id "Ledus.S5G065900.t1"; gene_id "Ledus.S5G065900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8693.t1 is derived from g9723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1397895	1399653	.	-	.	Ledus.S3G017000
Ledus.S3	AUGUSTUS	transcript	1397895	1399653	.	-	.	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	stop_codon	1397892	1397894	.	-	0	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	CDS	1397895	1398266	0.4	-	0	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	exon	1397895	1398266	.	-	.	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	intron	1398267	1398366	.	-	.	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	CDS	1398367	1398507	1	-	0	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	exon	1398367	1398507	.	-	.	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	intron	1398508	1398777	.	-	.	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	CDS	1398778	1398852	1	-	0	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	exon	1398778	1398852	.	-	.	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	intron	1398853	1399255	.	-	.	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	CDS	1399256	1399447	1	-	0	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	exon	1399256	1399447	.	-	.	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	intron	1399448	1399650	.	-	.	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	CDS	1399651	1399653	1	-	0	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	exon	1399651	1399653	.	-	.	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
Ledus.S3	AUGUSTUS	start_codon	1399651	1399653	.	-	0	transcript_id "Ledus.S3G017000.t1"; gene_id "Ledus.S3G017000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7614.t1 is derived from g12285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4367243	4368358	.	-	.	Ledus.S5G039200
Ledus.S5	AUGUSTUS	transcript	4367243	4368358	.	-	.	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	stop_codon	4367240	4367242	.	-	0	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	CDS	4367243	4367407	0.51	-	0	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	exon	4367243	4367407	.	-	.	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	intron	4367408	4367545	.	-	.	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	CDS	4367546	4367650	0.85	-	0	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	exon	4367546	4367650	.	-	.	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	intron	4367651	4368010	.	-	.	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	CDS	4368011	4368065	0.69	-	1	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	exon	4368011	4368065	.	-	.	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	intron	4368066	4368263	.	-	.	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	CDS	4368264	4368358	0.83	-	0	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	exon	4368264	4368358	.	-	.	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
Ledus.S5	AUGUSTUS	start_codon	4368356	4368358	.	-	0	transcript_id "Ledus.S5G039200.t1"; gene_id "Ledus.S5G039200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9179.t1 is derived from g10209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5257724	5259834	.	-	.	Ledus.S3G065600
Ledus.S3	AUGUSTUS	transcript	5257724	5259834	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	stop_codon	5257721	5257723	.	-	0	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	CDS	5257724	5257738	0.95	-	0	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	exon	5257724	5257738	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	intron	5257739	5257829	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	CDS	5257830	5258227	0.98	-	2	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	exon	5257830	5258227	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	intron	5258228	5258341	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	CDS	5258342	5258579	0.55	-	0	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	exon	5258342	5258579	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	intron	5258580	5258684	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	CDS	5258685	5259048	0.94	-	1	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	exon	5258685	5259048	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	intron	5259049	5259135	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	CDS	5259136	5259314	1	-	0	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	exon	5259136	5259314	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	intron	5259315	5259396	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	CDS	5259397	5259625	0.36	-	1	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	exon	5259397	5259625	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	intron	5259626	5259823	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	CDS	5259824	5259834	0.33	-	0	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	exon	5259824	5259834	.	-	.	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
Ledus.S3	AUGUSTUS	start_codon	5259832	5259834	.	-	0	transcript_id "Ledus.S3G065600.t1"; gene_id "Ledus.S3G065600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6421.t1 is derived from g3864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31161118	31164666	.	+	.	Ledus.S1G384200
Ledus.S1	AUGUSTUS	transcript	31161118	31164666	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	start_codon	31161118	31161120	.	+	0	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31161118	31161122	0.99	+	0	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31161118	31161122	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31161123	31161502	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31161503	31161556	0.83	+	1	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31161503	31161556	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31161557	31161751	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31161752	31161914	0.7	+	1	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31161752	31161914	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31161915	31162016	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31162017	31163192	0.87	+	0	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31162017	31163192	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31163193	31163290	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31163291	31163303	0.92	+	0	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31163291	31163303	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31163304	31163566	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31163567	31163646	0.94	+	2	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31163567	31163646	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31163647	31163730	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31163731	31163889	0.92	+	0	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31163731	31163889	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31163890	31164009	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31164010	31164666	0.91	+	0	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31164010	31164666	.	+	.	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	stop_codon	31164667	31164669	.	+	0	transcript_id "Ledus.S1G384200.t1"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	transcript	31161354	31164666	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	start_codon	31161354	31161356	.	+	0	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31161354	31161358	0.72	+	0	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31161354	31161358	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31161359	31161502	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31161503	31161556	0.64	+	1	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31161503	31161556	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31161557	31161751	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31161752	31161914	0.55	+	1	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31161752	31161914	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31161915	31162016	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31162017	31163192	0.89	+	0	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31162017	31163192	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31163193	31163290	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31163291	31163303	0.93	+	0	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31163291	31163303	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31163304	31163566	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31163567	31163646	0.94	+	2	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31163567	31163646	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31163647	31163730	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31163731	31163889	0.93	+	0	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31163731	31163889	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	intron	31163890	31164009	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	CDS	31164010	31164666	0.93	+	0	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	exon	31164010	31164666	.	+	.	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
Ledus.S1	AUGUSTUS	stop_codon	31164667	31164669	.	+	0	transcript_id "Ledus.S1G384200.t2"; gene_id "Ledus.S1G384200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8790.t1 is derived from g9820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1983480	1987981	.	-	.	Ledus.S3G026700
Ledus.S3	AUGUSTUS	transcript	1983480	1987981	.	-	.	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	stop_codon	1983477	1983479	.	-	0	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	CDS	1983480	1987058	0.93	-	0	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	exon	1983480	1987058	.	-	.	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	intron	1987059	1987137	.	-	.	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	CDS	1987138	1987235	0.99	-	2	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	exon	1987138	1987235	.	-	.	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	intron	1987236	1987339	.	-	.	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	CDS	1987340	1987389	0.99	-	1	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	exon	1987340	1987389	.	-	.	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	intron	1987390	1987463	.	-	.	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	CDS	1987464	1987630	1	-	0	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	exon	1987464	1987630	.	-	.	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	intron	1987631	1987718	.	-	.	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	CDS	1987719	1987795	1	-	2	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	exon	1987719	1987795	.	-	.	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	intron	1987796	1987860	.	-	.	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	CDS	1987861	1987981	0.95	-	0	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	exon	1987861	1987981	.	-	.	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
Ledus.S3	AUGUSTUS	start_codon	1987979	1987981	.	-	0	transcript_id "Ledus.S3G026700.t1"; gene_id "Ledus.S3G026700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4176.t1 is derived from g1612.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15195140	15196701	.	-	.	Ledus.S1G159700
Ledus.S1	AUGUSTUS	transcript	15195140	15196701	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	stop_codon	15195137	15195139	.	-	0	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15195140	15195154	0.97	-	0	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15195140	15195154	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	intron	15195155	15195292	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15195293	15195391	0.99	-	0	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15195293	15195391	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	intron	15195392	15195613	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15195614	15195715	1	-	0	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15195614	15195715	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	intron	15195716	15195806	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15195807	15195835	0.82	-	2	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15195807	15195835	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	intron	15195836	15196026	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15196027	15196210	0.99	-	0	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15196027	15196210	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	intron	15196211	15196345	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15196346	15196439	1	-	1	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15196346	15196439	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	intron	15196440	15196534	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15196535	15196701	0.86	-	0	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15196535	15196701	.	-	.	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	start_codon	15196699	15196701	.	-	0	transcript_id "Ledus.S1G159700.t1"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	transcript	15195140	15196701	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	stop_codon	15195137	15195139	.	-	0	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15195140	15195154	0.93	-	0	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15195140	15195154	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	intron	15195155	15195292	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15195293	15195391	0.99	-	0	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15195293	15195391	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	intron	15195392	15195613	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15195614	15195723	1	-	2	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15195614	15195723	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	intron	15195724	15195806	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15195807	15195869	0.77	-	2	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15195807	15195869	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	intron	15195870	15196026	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15196027	15196210	1	-	0	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15196027	15196210	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	intron	15196211	15196345	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15196346	15196439	1	-	1	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15196346	15196439	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	intron	15196440	15196534	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	CDS	15196535	15196701	0.88	-	0	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	exon	15196535	15196701	.	-	.	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
Ledus.S1	AUGUSTUS	start_codon	15196699	15196701	.	-	0	transcript_id "Ledus.S1G159700.t2"; gene_id "Ledus.S1G159700"
# This transcript jg4879.t2 is derived from g2317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4880.t1 is derived from g2318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20504680	20506727	.	-	.	Ledus.S1G230100
Ledus.S1	AUGUSTUS	transcript	20504680	20506727	.	-	.	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	stop_codon	20504677	20504679	.	-	0	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	CDS	20504680	20504979	0.98	-	0	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	exon	20504680	20504979	.	-	.	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	intron	20504980	20505146	.	-	.	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	CDS	20505147	20505311	1	-	0	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	exon	20505147	20505311	.	-	.	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	intron	20505312	20505413	.	-	.	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	CDS	20505414	20506381	0.99	-	2	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	exon	20505414	20506381	.	-	.	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	intron	20506382	20506522	.	-	.	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	CDS	20506523	20506727	0.67	-	0	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	exon	20506523	20506727	.	-	.	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
Ledus.S1	AUGUSTUS	start_codon	20506725	20506727	.	-	0	transcript_id "Ledus.S1G230100.t1"; gene_id "Ledus.S1G230100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9103.t1 is derived from g10133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4609029	4610375	.	+	.	Ledus.S3G058000
Ledus.S3	AUGUSTUS	transcript	4609029	4610375	.	+	.	transcript_id "Ledus.S3G058000.t1"; gene_id "Ledus.S3G058000"
Ledus.S3	AUGUSTUS	start_codon	4609029	4609031	.	+	0	transcript_id "Ledus.S3G058000.t1"; gene_id "Ledus.S3G058000"
Ledus.S3	AUGUSTUS	CDS	4609029	4610375	0.7	+	0	transcript_id "Ledus.S3G058000.t1"; gene_id "Ledus.S3G058000"
Ledus.S3	AUGUSTUS	exon	4609029	4610375	.	+	.	transcript_id "Ledus.S3G058000.t1"; gene_id "Ledus.S3G058000"
Ledus.S3	AUGUSTUS	stop_codon	4610376	4610378	.	+	0	transcript_id "Ledus.S3G058000.t1"; gene_id "Ledus.S3G058000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2690.t1 is derived from g123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1825310	1827071	.	+	.	Ledus.S1G011100
Ledus.S1	AUGUSTUS	transcript	1825310	1827071	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	start_codon	1825310	1825312	.	+	0	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	CDS	1825310	1825496	0.48	+	0	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	exon	1825310	1825496	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	intron	1825497	1825567	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	CDS	1825568	1825896	0.33	+	2	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	exon	1825568	1825896	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	intron	1825897	1825967	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	CDS	1825968	1826128	0.81	+	0	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	exon	1825968	1826128	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	intron	1826129	1826345	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	CDS	1826346	1826426	0.46	+	1	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	exon	1826346	1826426	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	intron	1826427	1826561	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	CDS	1826562	1826603	0.57	+	1	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	exon	1826562	1826603	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	intron	1826604	1826763	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	CDS	1826764	1826869	0.48	+	1	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	exon	1826764	1826869	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	intron	1826870	1827008	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	CDS	1827009	1827071	0.63	+	0	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	exon	1827009	1827071	.	+	.	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
Ledus.S1	AUGUSTUS	stop_codon	1827072	1827074	.	+	0	transcript_id "Ledus.S1G011100.t1"; gene_id "Ledus.S1G011100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg279.t1 is derived from g7140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1382955	1384064	.	-	.	Ledus.S2G016100
Ledus.S2	AUGUSTUS	transcript	1382955	1384064	.	-	.	transcript_id "Ledus.S2G016100.t1"; gene_id "Ledus.S2G016100"
Ledus.S2	AUGUSTUS	stop_codon	1382952	1382954	.	-	0	transcript_id "Ledus.S2G016100.t1"; gene_id "Ledus.S2G016100"
Ledus.S2	AUGUSTUS	CDS	1382955	1384064	0.8	-	0	transcript_id "Ledus.S2G016100.t1"; gene_id "Ledus.S2G016100"
Ledus.S2	AUGUSTUS	exon	1382955	1384064	.	-	.	transcript_id "Ledus.S2G016100.t1"; gene_id "Ledus.S2G016100"
Ledus.S2	AUGUSTUS	start_codon	1384062	1384064	.	-	0	transcript_id "Ledus.S2G016100.t1"; gene_id "Ledus.S2G016100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11453.t1 is derived from g5071.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4396631	4397711	.	+	.	Ledus.S4G060900
Ledus.S4	AUGUSTUS	transcript	4396631	4397711	.	+	.	transcript_id "Ledus.S4G060900.t1"; gene_id "Ledus.S4G060900"
Ledus.S4	AUGUSTUS	start_codon	4396631	4396633	.	+	0	transcript_id "Ledus.S4G060900.t1"; gene_id "Ledus.S4G060900"
Ledus.S4	AUGUSTUS	CDS	4396631	4396718	0.99	+	0	transcript_id "Ledus.S4G060900.t1"; gene_id "Ledus.S4G060900"
Ledus.S4	AUGUSTUS	exon	4396631	4396718	.	+	.	transcript_id "Ledus.S4G060900.t1"; gene_id "Ledus.S4G060900"
Ledus.S4	AUGUSTUS	intron	4396719	4397196	.	+	.	transcript_id "Ledus.S4G060900.t1"; gene_id "Ledus.S4G060900"
Ledus.S4	AUGUSTUS	CDS	4397197	4397429	0.94	+	2	transcript_id "Ledus.S4G060900.t1"; gene_id "Ledus.S4G060900"
Ledus.S4	AUGUSTUS	exon	4397197	4397429	.	+	.	transcript_id "Ledus.S4G060900.t1"; gene_id "Ledus.S4G060900"
Ledus.S4	AUGUSTUS	intron	4397430	4397687	.	+	.	transcript_id "Ledus.S4G060900.t1"; gene_id "Ledus.S4G060900"
Ledus.S4	AUGUSTUS	CDS	4397688	4397711	1	+	0	transcript_id "Ledus.S4G060900.t1"; gene_id "Ledus.S4G060900"
Ledus.S4	AUGUSTUS	exon	4397688	4397711	.	+	.	transcript_id "Ledus.S4G060900.t1"; gene_id "Ledus.S4G060900"
Ledus.S4	AUGUSTUS	stop_codon	4397712	4397714	.	+	0	transcript_id "Ledus.S4G060900.t1"; gene_id "Ledus.S4G060900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7990.t1 is derived from g12661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8367219	8372493	.	-	.	Ledus.S5G076800
Ledus.S5	AUGUSTUS	transcript	8367219	8372493	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	stop_codon	8367216	8367218	.	-	0	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8367219	8367444	0.87	-	1	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8367219	8367444	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8367445	8367575	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8367576	8367656	1	-	1	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8367576	8367656	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8367657	8367739	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8367740	8367911	0.99	-	2	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8367740	8367911	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8367912	8368023	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8368024	8368102	0.87	-	0	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8368024	8368102	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8368103	8368250	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8368251	8368344	1	-	1	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8368251	8368344	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8368345	8368471	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8368472	8368574	1	-	2	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8368472	8368574	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8368575	8368793	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8368794	8368914	1	-	0	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8368794	8368914	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8368915	8369109	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8369110	8369136	1	-	0	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8369110	8369136	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8369137	8369356	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8369357	8369530	0.8	-	0	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8369357	8369530	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8369531	8369728	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8369729	8369881	1	-	0	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8369729	8369881	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8369882	8370082	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8370083	8371700	0.75	-	1	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8370083	8371700	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8371701	8371777	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8371778	8371858	0.95	-	1	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8371778	8371858	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8371859	8371958	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8371959	8372035	0.95	-	0	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8371959	8372035	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8372036	8372238	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8372239	8372294	0.84	-	2	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8372239	8372294	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8372295	8372390	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8372391	8372493	0.7	-	0	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8372391	8372493	.	-	.	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	start_codon	8372491	8372493	.	-	0	transcript_id "Ledus.S5G076800.t1"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	transcript	8367219	8372493	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	stop_codon	8367216	8367218	.	-	0	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8367219	8367444	0.85	-	1	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8367219	8367444	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8367445	8367575	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8367576	8367656	1	-	1	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8367576	8367656	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8367657	8367739	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8367740	8367911	0.99	-	2	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8367740	8367911	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8367912	8368023	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8368024	8368102	0.89	-	0	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8368024	8368102	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8368103	8368250	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8368251	8368344	1	-	1	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8368251	8368344	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8368345	8368471	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8368472	8368574	1	-	2	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8368472	8368574	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8368575	8368793	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8368794	8368914	1	-	0	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8368794	8368914	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8368915	8369109	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8369110	8369136	1	-	0	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8369110	8369136	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8369137	8369356	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8369357	8369530	0.83	-	0	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8369357	8369530	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8369531	8369728	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8369729	8369881	1	-	0	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8369729	8369881	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8369882	8370082	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8370083	8371700	0.77	-	1	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8370083	8371700	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8371701	8371777	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8371778	8371858	0.94	-	1	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8371778	8371858	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8371859	8372161	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8372162	8372294	0.54	-	2	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8372162	8372294	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	intron	8372295	8372390	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	CDS	8372391	8372493	0.46	-	0	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	exon	8372391	8372493	.	-	.	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
Ledus.S5	AUGUSTUS	start_codon	8372491	8372493	.	-	0	transcript_id "Ledus.S5G076800.t2"; gene_id "Ledus.S5G076800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10307.t1 is derived from g11337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14169671	14170129	.	-	.	Ledus.S3G178400
Ledus.S3	AUGUSTUS	transcript	14169671	14170129	.	-	.	transcript_id "Ledus.S3G178400.t1"; gene_id "Ledus.S3G178400"
Ledus.S3	AUGUSTUS	stop_codon	14169668	14169670	.	-	0	transcript_id "Ledus.S3G178400.t1"; gene_id "Ledus.S3G178400"
Ledus.S3	AUGUSTUS	CDS	14169671	14169859	0.53	-	0	transcript_id "Ledus.S3G178400.t1"; gene_id "Ledus.S3G178400"
Ledus.S3	AUGUSTUS	exon	14169671	14169859	.	-	.	transcript_id "Ledus.S3G178400.t1"; gene_id "Ledus.S3G178400"
Ledus.S3	AUGUSTUS	intron	14169860	14169961	.	-	.	transcript_id "Ledus.S3G178400.t1"; gene_id "Ledus.S3G178400"
Ledus.S3	AUGUSTUS	CDS	14169962	14170129	0.26	-	0	transcript_id "Ledus.S3G178400.t1"; gene_id "Ledus.S3G178400"
Ledus.S3	AUGUSTUS	exon	14169962	14170129	.	-	.	transcript_id "Ledus.S3G178400.t1"; gene_id "Ledus.S3G178400"
Ledus.S3	AUGUSTUS	start_codon	14170127	14170129	.	-	0	transcript_id "Ledus.S3G178400.t1"; gene_id "Ledus.S3G178400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9889.t1 is derived from g10919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10976045	10979604	.	+	.	Ledus.S3G136600
Ledus.S3	AUGUSTUS	transcript	10976045	10979604	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	start_codon	10976045	10976047	.	+	0	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10976045	10976072	0.76	+	0	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10976045	10976072	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10976073	10976160	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10976161	10976233	1	+	2	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10976161	10976233	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10976234	10976365	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10976366	10976638	0.99	+	1	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10976366	10976638	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10976639	10976779	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10976780	10976966	1	+	1	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10976780	10976966	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10976967	10977212	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10977213	10977444	1	+	0	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10977213	10977444	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10977445	10977593	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10977594	10977659	1	+	2	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10977594	10977659	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10977660	10977792	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10977793	10977894	1	+	2	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10977793	10977894	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10977895	10978094	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10978095	10978135	1	+	2	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10978095	10978135	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10978136	10978315	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10978316	10978449	1	+	0	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10978316	10978449	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10978450	10978522	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10978523	10978586	1	+	1	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10978523	10978586	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10978587	10978960	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10978961	10979090	1	+	0	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10978961	10979090	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10979091	10979166	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10979167	10979228	1	+	2	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10979167	10979228	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10979229	10979409	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10979410	10979438	1	+	0	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10979410	10979438	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	intron	10979439	10979528	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	CDS	10979529	10979604	0.97	+	1	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	exon	10979529	10979604	.	+	.	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
Ledus.S3	AUGUSTUS	stop_codon	10979605	10979607	.	+	0	transcript_id "Ledus.S3G136600.t1"; gene_id "Ledus.S3G136600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6743.t1 is derived from g4186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33705024	33706316	.	-	.	Ledus.S1G416400
Ledus.S1	AUGUSTUS	transcript	33705024	33706316	.	-	.	transcript_id "Ledus.S1G416400.t1"; gene_id "Ledus.S1G416400"
Ledus.S1	AUGUSTUS	stop_codon	33705021	33705023	.	-	0	transcript_id "Ledus.S1G416400.t1"; gene_id "Ledus.S1G416400"
Ledus.S1	AUGUSTUS	CDS	33705024	33706316	0.45	-	0	transcript_id "Ledus.S1G416400.t1"; gene_id "Ledus.S1G416400"
Ledus.S1	AUGUSTUS	exon	33705024	33706316	.	-	.	transcript_id "Ledus.S1G416400.t1"; gene_id "Ledus.S1G416400"
Ledus.S1	AUGUSTUS	start_codon	33706314	33706316	.	-	0	transcript_id "Ledus.S1G416400.t1"; gene_id "Ledus.S1G416400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1975.t1 is derived from g8838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13993534	13995684	.	-	.	Ledus.S2G185700
Ledus.S2	AUGUSTUS	transcript	13993534	13995684	.	-	.	transcript_id "Ledus.S2G185700.t1"; gene_id "Ledus.S2G185700"
Ledus.S2	AUGUSTUS	stop_codon	13993531	13993533	.	-	0	transcript_id "Ledus.S2G185700.t1"; gene_id "Ledus.S2G185700"
Ledus.S2	AUGUSTUS	CDS	13993534	13995684	0.76	-	0	transcript_id "Ledus.S2G185700.t1"; gene_id "Ledus.S2G185700"
Ledus.S2	AUGUSTUS	exon	13993534	13995684	.	-	.	transcript_id "Ledus.S2G185700.t1"; gene_id "Ledus.S2G185700"
Ledus.S2	AUGUSTUS	start_codon	13995682	13995684	.	-	0	transcript_id "Ledus.S2G185700.t1"; gene_id "Ledus.S2G185700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2962.t1 is derived from g397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4962775	4963647	.	+	.	Ledus.S1G038300
Ledus.S1	AUGUSTUS	transcript	4962775	4963647	.	+	.	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	start_codon	4962775	4962777	.	+	0	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	CDS	4962775	4962908	0.67	+	0	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	exon	4962775	4962908	.	+	.	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	intron	4962909	4963034	.	+	.	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	CDS	4963035	4963131	1	+	1	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	exon	4963035	4963131	.	+	.	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	intron	4963132	4963210	.	+	.	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	CDS	4963211	4963287	1	+	0	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	exon	4963211	4963287	.	+	.	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	intron	4963288	4963646	.	+	.	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	CDS	4963647	4963647	0.84	+	1	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	exon	4963647	4963647	.	+	.	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
Ledus.S1	AUGUSTUS	stop_codon	4963648	4963650	.	+	0	transcript_id "Ledus.S1G038300.t1"; gene_id "Ledus.S1G038300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2997.t1 is derived from g432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5201508	5201978	.	+	.	Ledus.S1G041800
Ledus.S1	AUGUSTUS	transcript	5201508	5201978	.	+	.	transcript_id "Ledus.S1G041800.t1"; gene_id "Ledus.S1G041800"
Ledus.S1	AUGUSTUS	start_codon	5201508	5201510	.	+	0	transcript_id "Ledus.S1G041800.t1"; gene_id "Ledus.S1G041800"
Ledus.S1	AUGUSTUS	CDS	5201508	5201978	0.92	+	0	transcript_id "Ledus.S1G041800.t1"; gene_id "Ledus.S1G041800"
Ledus.S1	AUGUSTUS	exon	5201508	5201978	.	+	.	transcript_id "Ledus.S1G041800.t1"; gene_id "Ledus.S1G041800"
Ledus.S1	AUGUSTUS	stop_codon	5201979	5201981	.	+	0	transcript_id "Ledus.S1G041800.t1"; gene_id "Ledus.S1G041800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7309.t1 is derived from g11980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	970091	971202	.	-	.	Ledus.S5G008700
Ledus.S5	AUGUSTUS	transcript	970091	971202	.	-	.	transcript_id "Ledus.S5G008700.t1"; gene_id "Ledus.S5G008700"
Ledus.S5	AUGUSTUS	stop_codon	970088	970090	.	-	0	transcript_id "Ledus.S5G008700.t1"; gene_id "Ledus.S5G008700"
Ledus.S5	AUGUSTUS	CDS	970091	970690	0.81	-	0	transcript_id "Ledus.S5G008700.t1"; gene_id "Ledus.S5G008700"
Ledus.S5	AUGUSTUS	exon	970091	970690	.	-	.	transcript_id "Ledus.S5G008700.t1"; gene_id "Ledus.S5G008700"
Ledus.S5	AUGUSTUS	intron	970691	970882	.	-	.	transcript_id "Ledus.S5G008700.t1"; gene_id "Ledus.S5G008700"
Ledus.S5	AUGUSTUS	CDS	970883	970993	0.83	-	0	transcript_id "Ledus.S5G008700.t1"; gene_id "Ledus.S5G008700"
Ledus.S5	AUGUSTUS	exon	970883	970993	.	-	.	transcript_id "Ledus.S5G008700.t1"; gene_id "Ledus.S5G008700"
Ledus.S5	AUGUSTUS	intron	970994	971076	.	-	.	transcript_id "Ledus.S5G008700.t1"; gene_id "Ledus.S5G008700"
Ledus.S5	AUGUSTUS	CDS	971077	971202	0.89	-	0	transcript_id "Ledus.S5G008700.t1"; gene_id "Ledus.S5G008700"
Ledus.S5	AUGUSTUS	exon	971077	971202	.	-	.	transcript_id "Ledus.S5G008700.t1"; gene_id "Ledus.S5G008700"
Ledus.S5	AUGUSTUS	start_codon	971200	971202	.	-	0	transcript_id "Ledus.S5G008700.t1"; gene_id "Ledus.S5G008700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12095.t1 is derived from g5714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9483009	9483632	.	-	.	Ledus.S4G125100
Ledus.S4	AUGUSTUS	transcript	9483009	9483632	.	-	.	transcript_id "Ledus.S4G125100.t1"; gene_id "Ledus.S4G125100"
Ledus.S4	AUGUSTUS	stop_codon	9483006	9483008	.	-	0	transcript_id "Ledus.S4G125100.t1"; gene_id "Ledus.S4G125100"
Ledus.S4	AUGUSTUS	CDS	9483009	9483632	0.71	-	0	transcript_id "Ledus.S4G125100.t1"; gene_id "Ledus.S4G125100"
Ledus.S4	AUGUSTUS	exon	9483009	9483632	.	-	.	transcript_id "Ledus.S4G125100.t1"; gene_id "Ledus.S4G125100"
Ledus.S4	AUGUSTUS	start_codon	9483630	9483632	.	-	0	transcript_id "Ledus.S4G125100.t1"; gene_id "Ledus.S4G125100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8874.t1 is derived from g9904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2750537	2750968	.	-	.	Ledus.S3G035100
Ledus.S3	AUGUSTUS	transcript	2750537	2750968	.	-	.	transcript_id "Ledus.S3G035100.t1"; gene_id "Ledus.S3G035100"
Ledus.S3	AUGUSTUS	stop_codon	2750534	2750536	.	-	0	transcript_id "Ledus.S3G035100.t1"; gene_id "Ledus.S3G035100"
Ledus.S3	AUGUSTUS	CDS	2750537	2750968	0.33	-	0	transcript_id "Ledus.S3G035100.t1"; gene_id "Ledus.S3G035100"
Ledus.S3	AUGUSTUS	exon	2750537	2750968	.	-	.	transcript_id "Ledus.S3G035100.t1"; gene_id "Ledus.S3G035100"
Ledus.S3	AUGUSTUS	start_codon	2750966	2750968	.	-	0	transcript_id "Ledus.S3G035100.t1"; gene_id "Ledus.S3G035100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12.t1 is derived from g11.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C40	AUGUSTUS	gene	12326	12679	.	-	.	Ledus.C40G000100
Ledus.C40	AUGUSTUS	transcript	12326	12679	.	-	.	transcript_id "Ledus.C40G000100.t1"; gene_id "Ledus.C40G000100"
Ledus.C40	AUGUSTUS	stop_codon	12323	12325	.	-	0	transcript_id "Ledus.C40G000100.t1"; gene_id "Ledus.C40G000100"
Ledus.C40	AUGUSTUS	CDS	12326	12679	0.96	-	0	transcript_id "Ledus.C40G000100.t1"; gene_id "Ledus.C40G000100"
Ledus.C40	AUGUSTUS	exon	12326	12679	.	-	.	transcript_id "Ledus.C40G000100.t1"; gene_id "Ledus.C40G000100"
Ledus.C40	AUGUSTUS	start_codon	12677	12679	.	-	0	transcript_id "Ledus.C40G000100.t1"; gene_id "Ledus.C40G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg270.t1 is derived from g7131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1309513	1309988	.	+	.	Ledus.S2G015200
Ledus.S2	AUGUSTUS	transcript	1309513	1309988	.	+	.	transcript_id "Ledus.S2G015200.t1"; gene_id "Ledus.S2G015200"
Ledus.S2	AUGUSTUS	start_codon	1309513	1309515	.	+	0	transcript_id "Ledus.S2G015200.t1"; gene_id "Ledus.S2G015200"
Ledus.S2	AUGUSTUS	CDS	1309513	1309632	0.5	+	0	transcript_id "Ledus.S2G015200.t1"; gene_id "Ledus.S2G015200"
Ledus.S2	AUGUSTUS	exon	1309513	1309632	.	+	.	transcript_id "Ledus.S2G015200.t1"; gene_id "Ledus.S2G015200"
Ledus.S2	AUGUSTUS	intron	1309633	1309736	.	+	.	transcript_id "Ledus.S2G015200.t1"; gene_id "Ledus.S2G015200"
Ledus.S2	AUGUSTUS	CDS	1309737	1309988	0.5	+	0	transcript_id "Ledus.S2G015200.t1"; gene_id "Ledus.S2G015200"
Ledus.S2	AUGUSTUS	exon	1309737	1309988	.	+	.	transcript_id "Ledus.S2G015200.t1"; gene_id "Ledus.S2G015200"
Ledus.S2	AUGUSTUS	stop_codon	1309989	1309991	.	+	0	transcript_id "Ledus.S2G015200.t1"; gene_id "Ledus.S2G015200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4019.t1 is derived from g1455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14098811	14099413	.	+	.	Ledus.S1G144000
Ledus.S1	AUGUSTUS	transcript	14098811	14099413	.	+	.	transcript_id "Ledus.S1G144000.t1"; gene_id "Ledus.S1G144000"
Ledus.S1	AUGUSTUS	start_codon	14098811	14098813	.	+	0	transcript_id "Ledus.S1G144000.t1"; gene_id "Ledus.S1G144000"
Ledus.S1	AUGUSTUS	CDS	14098811	14099413	0.96	+	0	transcript_id "Ledus.S1G144000.t1"; gene_id "Ledus.S1G144000"
Ledus.S1	AUGUSTUS	exon	14098811	14099413	.	+	.	transcript_id "Ledus.S1G144000.t1"; gene_id "Ledus.S1G144000"
Ledus.S1	AUGUSTUS	stop_codon	14099414	14099416	.	+	0	transcript_id "Ledus.S1G144000.t1"; gene_id "Ledus.S1G144000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10712.t1 is derived from g11742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17315639	17318333	.	-	.	Ledus.S3G218900
Ledus.S3	AUGUSTUS	transcript	17315639	17318333	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	stop_codon	17315636	17315638	.	-	0	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	CDS	17315639	17315705	1	-	1	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	exon	17315639	17315705	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	intron	17315706	17315941	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	CDS	17315942	17316057	0.58	-	0	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	exon	17315942	17316057	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	intron	17316058	17316146	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	CDS	17316147	17316197	0.72	-	0	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	exon	17316147	17316197	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	intron	17316198	17316288	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	CDS	17316289	17316297	0.57	-	0	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	exon	17316289	17316297	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	intron	17316298	17316394	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	CDS	17316395	17316472	0.71	-	0	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	exon	17316395	17316472	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	intron	17316473	17316646	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	CDS	17316647	17316722	1	-	1	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	exon	17316647	17316722	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	intron	17316723	17316816	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	CDS	17316817	17316988	1	-	2	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	exon	17316817	17316988	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	intron	17316989	17317075	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	CDS	17317076	17317216	1	-	2	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	exon	17317076	17317216	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	intron	17317217	17317361	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	CDS	17317362	17317632	0.99	-	0	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	exon	17317362	17317632	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	intron	17317633	17317762	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	CDS	17317763	17317963	1	-	0	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	exon	17317763	17317963	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	intron	17317964	17318045	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	CDS	17318046	17318333	0.99	-	0	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	exon	17318046	17318333	.	-	.	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
Ledus.S3	AUGUSTUS	start_codon	17318331	17318333	.	-	0	transcript_id "Ledus.S3G218900.t1"; gene_id "Ledus.S3G218900"
# This transcript jg2053.t2 is derived from g8916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2054.t1 is derived from g8917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14352310	14353875	.	+	.	Ledus.S2G193600
Ledus.S2	AUGUSTUS	transcript	14352310	14353875	.	+	.	transcript_id "Ledus.S2G193600.t1"; gene_id "Ledus.S2G193600"
Ledus.S2	AUGUSTUS	start_codon	14352310	14352312	.	+	0	transcript_id "Ledus.S2G193600.t1"; gene_id "Ledus.S2G193600"
Ledus.S2	AUGUSTUS	CDS	14352310	14353875	0.85	+	0	transcript_id "Ledus.S2G193600.t1"; gene_id "Ledus.S2G193600"
Ledus.S2	AUGUSTUS	exon	14352310	14353875	.	+	.	transcript_id "Ledus.S2G193600.t1"; gene_id "Ledus.S2G193600"
Ledus.S2	AUGUSTUS	stop_codon	14353876	14353878	.	+	0	transcript_id "Ledus.S2G193600.t1"; gene_id "Ledus.S2G193600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg248.t1 is derived from g7109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1121290	1122636	.	+	.	Ledus.S2G013000
Ledus.S2	AUGUSTUS	transcript	1121290	1122636	.	+	.	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	start_codon	1121290	1121292	.	+	0	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	CDS	1121290	1121474	0.93	+	0	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	exon	1121290	1121474	.	+	.	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	intron	1121475	1121567	.	+	.	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	CDS	1121568	1121608	1	+	1	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	exon	1121568	1121608	.	+	.	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	intron	1121609	1121718	.	+	.	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	CDS	1121719	1122085	1	+	2	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	exon	1121719	1122085	.	+	.	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	intron	1122086	1122155	.	+	.	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	CDS	1122156	1122636	0.95	+	1	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	exon	1122156	1122636	.	+	.	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
Ledus.S2	AUGUSTUS	stop_codon	1122637	1122639	.	+	0	transcript_id "Ledus.S2G013000.t1"; gene_id "Ledus.S2G013000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11859.t1 is derived from g5478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7400017	7400993	.	-	.	Ledus.S4G101500
Ledus.S4	AUGUSTUS	transcript	7400017	7400993	.	-	.	transcript_id "Ledus.S4G101500.t1"; gene_id "Ledus.S4G101500"
Ledus.S4	AUGUSTUS	stop_codon	7400014	7400016	.	-	0	transcript_id "Ledus.S4G101500.t1"; gene_id "Ledus.S4G101500"
Ledus.S4	AUGUSTUS	CDS	7400017	7400187	0.99	-	0	transcript_id "Ledus.S4G101500.t1"; gene_id "Ledus.S4G101500"
Ledus.S4	AUGUSTUS	exon	7400017	7400187	.	-	.	transcript_id "Ledus.S4G101500.t1"; gene_id "Ledus.S4G101500"
Ledus.S4	AUGUSTUS	intron	7400188	7400280	.	-	.	transcript_id "Ledus.S4G101500.t1"; gene_id "Ledus.S4G101500"
Ledus.S4	AUGUSTUS	CDS	7400281	7400652	0.98	-	0	transcript_id "Ledus.S4G101500.t1"; gene_id "Ledus.S4G101500"
Ledus.S4	AUGUSTUS	exon	7400281	7400652	.	-	.	transcript_id "Ledus.S4G101500.t1"; gene_id "Ledus.S4G101500"
Ledus.S4	AUGUSTUS	intron	7400653	7400789	.	-	.	transcript_id "Ledus.S4G101500.t1"; gene_id "Ledus.S4G101500"
Ledus.S4	AUGUSTUS	CDS	7400790	7400993	0.77	-	0	transcript_id "Ledus.S4G101500.t1"; gene_id "Ledus.S4G101500"
Ledus.S4	AUGUSTUS	exon	7400790	7400993	.	-	.	transcript_id "Ledus.S4G101500.t1"; gene_id "Ledus.S4G101500"
Ledus.S4	AUGUSTUS	start_codon	7400991	7400993	.	-	0	transcript_id "Ledus.S4G101500.t1"; gene_id "Ledus.S4G101500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7393.t1 is derived from g12064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2053817	2058564	.	-	.	Ledus.S5G017100
Ledus.S5	AUGUSTUS	transcript	2053817	2058564	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	stop_codon	2053814	2053816	.	-	0	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	CDS	2053817	2054386	0.45	-	0	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	exon	2053817	2054386	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	intron	2054387	2054505	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	CDS	2054506	2054734	0.99	-	1	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	exon	2054506	2054734	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	intron	2054735	2054873	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	CDS	2054874	2054983	1	-	0	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	exon	2054874	2054983	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	intron	2054984	2055101	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	CDS	2055102	2055485	0.96	-	0	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	exon	2055102	2055485	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	intron	2055486	2055589	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	CDS	2055590	2055868	0.95	-	0	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	exon	2055590	2055868	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	intron	2055869	2055997	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	CDS	2055998	2056119	1	-	2	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	exon	2055998	2056119	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	intron	2056120	2056282	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	CDS	2056283	2056388	1	-	0	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	exon	2056283	2056388	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	intron	2056389	2056599	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	CDS	2056600	2058072	0.76	-	0	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	exon	2056600	2058072	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	intron	2058073	2058365	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	CDS	2058366	2058393	0.38	-	1	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	exon	2058366	2058393	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	intron	2058394	2058535	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	CDS	2058536	2058564	0.22	-	0	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	exon	2058536	2058564	.	-	.	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
Ledus.S5	AUGUSTUS	start_codon	2058562	2058564	.	-	0	transcript_id "Ledus.S5G017100.t1"; gene_id "Ledus.S5G017100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3411.t1 is derived from g846.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8128533	8130638	.	+	.	Ledus.S1G083200
Ledus.S1	AUGUSTUS	transcript	8128533	8130638	.	+	.	transcript_id "Ledus.S1G083200.t1"; gene_id "Ledus.S1G083200"
Ledus.S1	AUGUSTUS	start_codon	8128533	8128535	.	+	0	transcript_id "Ledus.S1G083200.t1"; gene_id "Ledus.S1G083200"
Ledus.S1	AUGUSTUS	CDS	8128533	8130638	0.7	+	0	transcript_id "Ledus.S1G083200.t1"; gene_id "Ledus.S1G083200"
Ledus.S1	AUGUSTUS	exon	8128533	8130638	.	+	.	transcript_id "Ledus.S1G083200.t1"; gene_id "Ledus.S1G083200"
Ledus.S1	AUGUSTUS	stop_codon	8130639	8130641	.	+	0	transcript_id "Ledus.S1G083200.t1"; gene_id "Ledus.S1G083200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1792.t1 is derived from g8655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12627844	12628221	.	-	.	Ledus.S2G167400
Ledus.S2	AUGUSTUS	transcript	12627844	12628221	.	-	.	transcript_id "Ledus.S2G167400.t1"; gene_id "Ledus.S2G167400"
Ledus.S2	AUGUSTUS	stop_codon	12627841	12627843	.	-	0	transcript_id "Ledus.S2G167400.t1"; gene_id "Ledus.S2G167400"
Ledus.S2	AUGUSTUS	CDS	12627844	12628221	0.75	-	0	transcript_id "Ledus.S2G167400.t1"; gene_id "Ledus.S2G167400"
Ledus.S2	AUGUSTUS	exon	12627844	12628221	.	-	.	transcript_id "Ledus.S2G167400.t1"; gene_id "Ledus.S2G167400"
Ledus.S2	AUGUSTUS	start_codon	12628219	12628221	.	-	0	transcript_id "Ledus.S2G167400.t1"; gene_id "Ledus.S2G167400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1044.t1 is derived from g7905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6951982	6952881	.	+	.	Ledus.S2G092600
Ledus.S2	AUGUSTUS	transcript	6951982	6952881	.	+	.	transcript_id "Ledus.S2G092600.t1"; gene_id "Ledus.S2G092600"
Ledus.S2	AUGUSTUS	start_codon	6951982	6951984	.	+	0	transcript_id "Ledus.S2G092600.t1"; gene_id "Ledus.S2G092600"
Ledus.S2	AUGUSTUS	CDS	6951982	6952486	0.52	+	0	transcript_id "Ledus.S2G092600.t1"; gene_id "Ledus.S2G092600"
Ledus.S2	AUGUSTUS	exon	6951982	6952486	.	+	.	transcript_id "Ledus.S2G092600.t1"; gene_id "Ledus.S2G092600"
Ledus.S2	AUGUSTUS	intron	6952487	6952574	.	+	.	transcript_id "Ledus.S2G092600.t1"; gene_id "Ledus.S2G092600"
Ledus.S2	AUGUSTUS	CDS	6952575	6952684	1	+	2	transcript_id "Ledus.S2G092600.t1"; gene_id "Ledus.S2G092600"
Ledus.S2	AUGUSTUS	exon	6952575	6952684	.	+	.	transcript_id "Ledus.S2G092600.t1"; gene_id "Ledus.S2G092600"
Ledus.S2	AUGUSTUS	intron	6952685	6952803	.	+	.	transcript_id "Ledus.S2G092600.t1"; gene_id "Ledus.S2G092600"
Ledus.S2	AUGUSTUS	CDS	6952804	6952881	0.99	+	0	transcript_id "Ledus.S2G092600.t1"; gene_id "Ledus.S2G092600"
Ledus.S2	AUGUSTUS	exon	6952804	6952881	.	+	.	transcript_id "Ledus.S2G092600.t1"; gene_id "Ledus.S2G092600"
Ledus.S2	AUGUSTUS	stop_codon	6952882	6952884	.	+	0	transcript_id "Ledus.S2G092600.t1"; gene_id "Ledus.S2G092600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2880.t1 is derived from g315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4372357	4375152	.	+	.	Ledus.S1G030100
Ledus.S1	AUGUSTUS	transcript	4372357	4375152	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	start_codon	4372357	4372359	.	+	0	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	CDS	4372357	4372944	0.7	+	0	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	exon	4372357	4372944	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	intron	4372945	4373104	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	CDS	4373105	4373192	1	+	0	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	exon	4373105	4373192	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	intron	4373193	4373322	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	CDS	4373323	4373516	1	+	2	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	exon	4373323	4373516	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	intron	4373517	4373924	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	CDS	4373925	4374046	1	+	0	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	exon	4373925	4374046	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	intron	4374047	4374173	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	CDS	4374174	4374417	1	+	1	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	exon	4374174	4374417	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	intron	4374418	4374500	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	CDS	4374501	4374735	0.99	+	0	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	exon	4374501	4374735	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	intron	4374736	4374829	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	CDS	4374830	4375152	0.98	+	2	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	exon	4374830	4375152	.	+	.	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
Ledus.S1	AUGUSTUS	stop_codon	4375153	4375155	.	+	0	transcript_id "Ledus.S1G030100.t1"; gene_id "Ledus.S1G030100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6001.t1 is derived from g3444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28211817	28219854	.	+	.	Ledus.S1G342200
Ledus.S1	AUGUSTUS	transcript	28211817	28219854	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	start_codon	28211817	28211819	.	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28211817	28211819	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28211817	28211819	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28211820	28212008	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28212009	28212055	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28212009	28212055	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28212056	28212265	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28212266	28212323	1	+	1	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28212266	28212323	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28212324	28212453	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28212454	28212557	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28212454	28212557	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28212558	28212647	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28212648	28212968	1	+	1	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28212648	28212968	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28212969	28213107	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28213108	28213294	1	+	1	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28213108	28213294	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28213295	28213556	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28213557	28213625	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28213557	28213625	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28213626	28213717	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28213718	28213819	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28213718	28213819	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28213820	28213939	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28213940	28214029	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28213940	28214029	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28214030	28214198	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28214199	28214318	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28214199	28214318	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28214319	28214600	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28214601	28214696	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28214601	28214696	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28214697	28214803	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28214804	28214860	0.78	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28214804	28214860	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28214861	28214952	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28214953	28215096	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28214953	28215096	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28215097	28215250	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28215251	28215338	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28215251	28215338	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28215339	28215509	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28215510	28215595	1	+	2	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28215510	28215595	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28215596	28215791	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28215792	28215917	0.99	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28215792	28215917	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28215918	28216025	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28216026	28216127	0.98	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28216026	28216127	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28216128	28216262	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28216263	28216370	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28216263	28216370	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28216371	28216555	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28216556	28216687	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28216556	28216687	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28216688	28216885	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28216886	28217008	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28216886	28217008	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28217009	28217148	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28217149	28217292	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28217149	28217292	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28217293	28217452	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28217453	28217566	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28217453	28217566	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28217567	28217656	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28217657	28217734	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28217657	28217734	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28217735	28217850	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28217851	28218042	0.87	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28217851	28218042	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28218043	28218145	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28218146	28218244	0.66	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28218146	28218244	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28218245	28218377	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28218378	28218446	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28218378	28218446	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28218447	28218614	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28218615	28218830	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28218615	28218830	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28218831	28218930	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28218931	28219071	0.92	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28218931	28219071	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28219072	28219178	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28219179	28219234	0.94	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28219179	28219234	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28219235	28219339	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28219340	28219406	1	+	1	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28219340	28219406	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28219407	28219547	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28219548	28219652	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28219548	28219652	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	intron	28219653	28219737	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	CDS	28219738	28219854	1	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	exon	28219738	28219854	.	+	.	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
Ledus.S1	AUGUSTUS	stop_codon	28219855	28219857	.	+	0	transcript_id "Ledus.S1G342200.t1"; gene_id "Ledus.S1G342200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10450.t1 is derived from g11480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15223561	15225478	.	-	.	Ledus.S3G192700
Ledus.S3	AUGUSTUS	transcript	15223561	15225478	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	stop_codon	15223558	15223560	.	-	0	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	CDS	15223561	15223624	0.87	-	1	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	exon	15223561	15223624	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	intron	15223625	15223762	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	CDS	15223763	15223865	1	-	2	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	exon	15223763	15223865	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	intron	15223866	15223998	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	CDS	15223999	15224155	1	-	0	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	exon	15223999	15224155	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	intron	15224156	15224291	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	CDS	15224292	15224390	1	-	0	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	exon	15224292	15224390	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	intron	15224391	15224490	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	CDS	15224491	15224595	1	-	0	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	exon	15224491	15224595	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	intron	15224596	15224759	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	CDS	15224760	15224873	1	-	0	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	exon	15224760	15224873	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	intron	15224874	15224987	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	CDS	15224988	15225175	1	-	2	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	exon	15224988	15225175	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	intron	15225176	15225255	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	CDS	15225256	15225478	0.68	-	0	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	exon	15225256	15225478	.	-	.	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
Ledus.S3	AUGUSTUS	start_codon	15225476	15225478	.	-	0	transcript_id "Ledus.S3G192700.t1"; gene_id "Ledus.S3G192700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3721.t1 is derived from g1157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11155974	11156814	.	-	.	Ledus.S1G114200
Ledus.S1	AUGUSTUS	transcript	11155974	11156814	.	-	.	transcript_id "Ledus.S1G114200.t1"; gene_id "Ledus.S1G114200"
Ledus.S1	AUGUSTUS	stop_codon	11155971	11155973	.	-	0	transcript_id "Ledus.S1G114200.t1"; gene_id "Ledus.S1G114200"
Ledus.S1	AUGUSTUS	CDS	11155974	11156526	0.65	-	1	transcript_id "Ledus.S1G114200.t1"; gene_id "Ledus.S1G114200"
Ledus.S1	AUGUSTUS	exon	11155974	11156526	.	-	.	transcript_id "Ledus.S1G114200.t1"; gene_id "Ledus.S1G114200"
Ledus.S1	AUGUSTUS	intron	11156527	11156668	.	-	.	transcript_id "Ledus.S1G114200.t1"; gene_id "Ledus.S1G114200"
Ledus.S1	AUGUSTUS	CDS	11156669	11156814	0.59	-	0	transcript_id "Ledus.S1G114200.t1"; gene_id "Ledus.S1G114200"
Ledus.S1	AUGUSTUS	exon	11156669	11156814	.	-	.	transcript_id "Ledus.S1G114200.t1"; gene_id "Ledus.S1G114200"
Ledus.S1	AUGUSTUS	start_codon	11156812	11156814	.	-	0	transcript_id "Ledus.S1G114200.t1"; gene_id "Ledus.S1G114200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8913.t1 is derived from g9943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3074735	3078839	.	-	.	Ledus.S3G039000
Ledus.S3	AUGUSTUS	transcript	3074735	3078839	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	stop_codon	3074732	3074734	.	-	0	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3074735	3074741	0.99	-	1	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3074735	3074741	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3074742	3074828	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3074829	3075172	0.99	-	0	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3074829	3075172	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3075173	3075280	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3075281	3075413	0.96	-	1	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3075281	3075413	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3075414	3075509	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3075510	3075692	0.84	-	1	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3075510	3075692	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3075693	3075806	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3075807	3075964	0.84	-	0	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3075807	3075964	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3075965	3076049	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3076050	3076217	1	-	0	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3076050	3076217	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3076218	3076353	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3076354	3076437	1	-	0	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3076354	3076437	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3076438	3076584	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3076585	3076704	1	-	0	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3076585	3076704	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3076705	3076851	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3076852	3076905	1	-	0	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3076852	3076905	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3076906	3077077	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3077078	3077125	1	-	0	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3077078	3077125	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3077126	3077265	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3077266	3077401	1	-	1	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3077266	3077401	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3077402	3077494	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3077495	3077693	0.98	-	2	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3077495	3077693	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3077694	3077797	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3077798	3077982	0.88	-	1	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3077798	3077982	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3077983	3078093	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3078094	3078186	1	-	1	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3078094	3078186	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3078187	3078326	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3078327	3078472	1	-	0	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3078327	3078472	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3078473	3078552	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3078553	3078675	0.92	-	0	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3078553	3078675	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	intron	3078676	3078794	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	CDS	3078795	3078839	0.6	-	0	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	exon	3078795	3078839	.	-	.	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
Ledus.S3	AUGUSTUS	start_codon	3078837	3078839	.	-	0	transcript_id "Ledus.S3G039000.t1"; gene_id "Ledus.S3G039000"
# This transcript jg1155.t2 is derived from g8016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1156.t1 is derived from g8017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7973065	7974393	.	-	.	Ledus.S2G103800
Ledus.S2	AUGUSTUS	transcript	7973065	7974393	.	-	.	transcript_id "Ledus.S2G103800.t1"; gene_id "Ledus.S2G103800"
Ledus.S2	AUGUSTUS	stop_codon	7973062	7973064	.	-	0	transcript_id "Ledus.S2G103800.t1"; gene_id "Ledus.S2G103800"
Ledus.S2	AUGUSTUS	CDS	7973065	7974393	0.98	-	0	transcript_id "Ledus.S2G103800.t1"; gene_id "Ledus.S2G103800"
Ledus.S2	AUGUSTUS	exon	7973065	7974393	.	-	.	transcript_id "Ledus.S2G103800.t1"; gene_id "Ledus.S2G103800"
Ledus.S2	AUGUSTUS	start_codon	7974391	7974393	.	-	0	transcript_id "Ledus.S2G103800.t1"; gene_id "Ledus.S2G103800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1101.t1 is derived from g7962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7522264	7526998	.	+	.	Ledus.S2G098300
Ledus.S2	AUGUSTUS	transcript	7522264	7526998	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	start_codon	7522264	7522266	.	+	0	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7522264	7522402	0.77	+	0	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7522264	7522402	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7522403	7522676	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7522677	7522837	1	+	2	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7522677	7522837	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7522838	7523055	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7523056	7523229	1	+	0	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7523056	7523229	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7523230	7523524	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7523525	7523655	1	+	0	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7523525	7523655	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7523656	7523823	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7523824	7523971	1	+	1	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7523824	7523971	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7523972	7524165	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7524166	7524590	1	+	0	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7524166	7524590	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7524591	7524744	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7524745	7524869	1	+	1	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7524745	7524869	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7524870	7525471	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7525472	7525515	0.88	+	2	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7525472	7525515	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7525516	7525620	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7525621	7525752	0.89	+	0	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7525621	7525752	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7525753	7525850	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7525851	7525928	1	+	0	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7525851	7525928	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7525929	7526013	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7526014	7526096	1	+	0	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7526014	7526096	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7526097	7526191	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7526192	7526314	1	+	1	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7526192	7526314	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7526315	7526399	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7526400	7526460	1	+	1	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7526400	7526460	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7526461	7526590	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7526591	7526720	1	+	0	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7526591	7526720	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	intron	7526721	7526954	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	CDS	7526955	7526998	0.8	+	2	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	exon	7526955	7526998	.	+	.	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
Ledus.S2	AUGUSTUS	stop_codon	7526999	7527001	.	+	0	transcript_id "Ledus.S2G098300.t1"; gene_id "Ledus.S2G098300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6251.t1 is derived from g3694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29903220	29908778	.	+	.	Ledus.S1G367200
Ledus.S1	AUGUSTUS	transcript	29903220	29908778	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	start_codon	29903220	29903222	.	+	0	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	CDS	29903220	29903267	1	+	0	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	exon	29903220	29903267	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	intron	29903268	29903343	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	CDS	29903344	29903433	1	+	0	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	exon	29903344	29903433	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	intron	29903434	29903551	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	CDS	29903552	29903604	1	+	0	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	exon	29903552	29903604	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	intron	29903605	29903712	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	CDS	29903713	29903788	1	+	1	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	exon	29903713	29903788	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	intron	29903789	29903992	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	CDS	29903993	29904054	1	+	0	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	exon	29903993	29904054	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	intron	29904055	29904207	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	CDS	29904208	29904286	1	+	1	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	exon	29904208	29904286	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	intron	29904287	29904379	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	CDS	29904380	29904439	0.89	+	0	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	exon	29904380	29904439	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	intron	29904440	29904563	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	CDS	29904564	29906315	0.73	+	0	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	exon	29904564	29906315	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	intron	29906316	29906543	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	CDS	29906544	29907425	1	+	0	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	exon	29906544	29907425	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	intron	29907426	29907608	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	CDS	29907609	29908778	0.78	+	0	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	exon	29907609	29908778	.	+	.	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
Ledus.S1	AUGUSTUS	stop_codon	29908779	29908781	.	+	0	transcript_id "Ledus.S1G367200.t1"; gene_id "Ledus.S1G367200"
# This transcript jg4076.t2 is derived from g1512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4077.t1 is derived from g1513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14495270	14499193	.	-	.	Ledus.S1G149800
Ledus.S1	AUGUSTUS	transcript	14495270	14499193	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	stop_codon	14495267	14495269	.	-	0	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	CDS	14495270	14495952	0.58	-	2	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	exon	14495270	14495952	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	intron	14495953	14496248	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	CDS	14496249	14496312	0.64	-	0	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	exon	14496249	14496312	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	intron	14496313	14496394	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	CDS	14496395	14496430	1	-	0	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	exon	14496395	14496430	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	intron	14496431	14496618	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	CDS	14496619	14496732	1	-	0	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	exon	14496619	14496732	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	intron	14496733	14496834	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	CDS	14496835	14497050	0.92	-	0	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	exon	14496835	14497050	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	intron	14497051	14497164	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	CDS	14497165	14497290	0.98	-	0	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	exon	14497165	14497290	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	intron	14497291	14497396	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	CDS	14497397	14497471	0.77	-	0	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	exon	14497397	14497471	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	intron	14497472	14497780	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	CDS	14497781	14497918	0.6	-	0	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	exon	14497781	14497918	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	intron	14497919	14498079	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	CDS	14498080	14498160	1	-	0	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	exon	14498080	14498160	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	intron	14498161	14498261	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	CDS	14498262	14498312	1	-	0	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	exon	14498262	14498312	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	intron	14498313	14499127	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	CDS	14499128	14499193	0.69	-	0	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	exon	14499128	14499193	.	-	.	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
Ledus.S1	AUGUSTUS	start_codon	14499191	14499193	.	-	0	transcript_id "Ledus.S1G149800.t1"; gene_id "Ledus.S1G149800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3056.t1 is derived from g491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5567236	5567718	.	+	.	Ledus.S1G047700
Ledus.S1	AUGUSTUS	transcript	5567236	5567718	.	+	.	transcript_id "Ledus.S1G047700.t1"; gene_id "Ledus.S1G047700"
Ledus.S1	AUGUSTUS	start_codon	5567236	5567238	.	+	0	transcript_id "Ledus.S1G047700.t1"; gene_id "Ledus.S1G047700"
Ledus.S1	AUGUSTUS	CDS	5567236	5567718	0.51	+	0	transcript_id "Ledus.S1G047700.t1"; gene_id "Ledus.S1G047700"
Ledus.S1	AUGUSTUS	exon	5567236	5567718	.	+	.	transcript_id "Ledus.S1G047700.t1"; gene_id "Ledus.S1G047700"
Ledus.S1	AUGUSTUS	stop_codon	5567719	5567721	.	+	0	transcript_id "Ledus.S1G047700.t1"; gene_id "Ledus.S1G047700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4475.t1 is derived from g1911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17244843	17245682	.	-	.	Ledus.S1G189600
Ledus.S1	AUGUSTUS	transcript	17244843	17245682	.	-	.	transcript_id "Ledus.S1G189600.t1"; gene_id "Ledus.S1G189600"
Ledus.S1	AUGUSTUS	stop_codon	17244840	17244842	.	-	0	transcript_id "Ledus.S1G189600.t1"; gene_id "Ledus.S1G189600"
Ledus.S1	AUGUSTUS	CDS	17244843	17245682	0.58	-	0	transcript_id "Ledus.S1G189600.t1"; gene_id "Ledus.S1G189600"
Ledus.S1	AUGUSTUS	exon	17244843	17245682	.	-	.	transcript_id "Ledus.S1G189600.t1"; gene_id "Ledus.S1G189600"
Ledus.S1	AUGUSTUS	start_codon	17245680	17245682	.	-	0	transcript_id "Ledus.S1G189600.t1"; gene_id "Ledus.S1G189600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8875.t1 is derived from g9905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2771104	2772927	.	-	.	Ledus.S3G035200
Ledus.S3	AUGUSTUS	transcript	2771104	2772927	.	-	.	transcript_id "Ledus.S3G035200.t1"; gene_id "Ledus.S3G035200"
Ledus.S3	AUGUSTUS	stop_codon	2771101	2771103	.	-	0	transcript_id "Ledus.S3G035200.t1"; gene_id "Ledus.S3G035200"
Ledus.S3	AUGUSTUS	CDS	2771104	2772927	1	-	0	transcript_id "Ledus.S3G035200.t1"; gene_id "Ledus.S3G035200"
Ledus.S3	AUGUSTUS	exon	2771104	2772927	.	-	.	transcript_id "Ledus.S3G035200.t1"; gene_id "Ledus.S3G035200"
Ledus.S3	AUGUSTUS	start_codon	2772925	2772927	.	-	0	transcript_id "Ledus.S3G035200.t1"; gene_id "Ledus.S3G035200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3335.t1 is derived from g770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7549734	7550488	.	+	.	Ledus.S1G075600
Ledus.S1	AUGUSTUS	transcript	7549734	7550488	.	+	.	transcript_id "Ledus.S1G075600.t1"; gene_id "Ledus.S1G075600"
Ledus.S1	AUGUSTUS	start_codon	7549734	7549736	.	+	0	transcript_id "Ledus.S1G075600.t1"; gene_id "Ledus.S1G075600"
Ledus.S1	AUGUSTUS	CDS	7549734	7549755	0.62	+	0	transcript_id "Ledus.S1G075600.t1"; gene_id "Ledus.S1G075600"
Ledus.S1	AUGUSTUS	exon	7549734	7549755	.	+	.	transcript_id "Ledus.S1G075600.t1"; gene_id "Ledus.S1G075600"
Ledus.S1	AUGUSTUS	intron	7549756	7550087	.	+	.	transcript_id "Ledus.S1G075600.t1"; gene_id "Ledus.S1G075600"
Ledus.S1	AUGUSTUS	CDS	7550088	7550488	0.32	+	2	transcript_id "Ledus.S1G075600.t1"; gene_id "Ledus.S1G075600"
Ledus.S1	AUGUSTUS	exon	7550088	7550488	.	+	.	transcript_id "Ledus.S1G075600.t1"; gene_id "Ledus.S1G075600"
Ledus.S1	AUGUSTUS	stop_codon	7550489	7550491	.	+	0	transcript_id "Ledus.S1G075600.t1"; gene_id "Ledus.S1G075600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4514.t1 is derived from g1951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17466798	17467911	.	-	.	Ledus.S1G193500
Ledus.S1	AUGUSTUS	transcript	17466798	17467911	.	-	.	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	stop_codon	17466795	17466797	.	-	0	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	CDS	17466798	17466861	1	-	1	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	exon	17466798	17466861	.	-	.	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	intron	17466862	17466947	.	-	.	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	CDS	17466948	17467042	1	-	0	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	exon	17466948	17467042	.	-	.	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	intron	17467043	17467135	.	-	.	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	CDS	17467136	17467273	1	-	0	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	exon	17467136	17467273	.	-	.	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	intron	17467274	17467397	.	-	.	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	CDS	17467398	17467499	1	-	0	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	exon	17467398	17467499	.	-	.	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	intron	17467500	17467656	.	-	.	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	CDS	17467657	17467911	0.87	-	0	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	exon	17467657	17467911	.	-	.	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
Ledus.S1	AUGUSTUS	start_codon	17467909	17467911	.	-	0	transcript_id "Ledus.S1G193500.t1"; gene_id "Ledus.S1G193500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7900.t1 is derived from g12571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7728551	7729589	.	-	.	Ledus.S5G067800
Ledus.S5	AUGUSTUS	transcript	7728551	7729589	.	-	.	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	stop_codon	7728548	7728550	.	-	0	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	CDS	7728551	7728715	0.7	-	0	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	exon	7728551	7728715	.	-	.	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	intron	7728716	7728794	.	-	.	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	CDS	7728795	7729039	1	-	2	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	exon	7728795	7729039	.	-	.	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	intron	7729040	7729129	.	-	.	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	CDS	7729130	7729297	1	-	2	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	exon	7729130	7729297	.	-	.	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	intron	7729298	7729417	.	-	.	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	CDS	7729418	7729589	0.97	-	0	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	exon	7729418	7729589	.	-	.	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
Ledus.S5	AUGUSTUS	start_codon	7729587	7729589	.	-	0	transcript_id "Ledus.S5G067800.t1"; gene_id "Ledus.S5G067800"
# This transcript jg3828.t2 is derived from g1264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3829.t1 is derived from g1265.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12846603	12846926	.	+	.	Ledus.S1G125000
Ledus.S1	AUGUSTUS	transcript	12846603	12846926	.	+	.	transcript_id "Ledus.S1G125000.t1"; gene_id "Ledus.S1G125000"
Ledus.S1	AUGUSTUS	start_codon	12846603	12846605	.	+	0	transcript_id "Ledus.S1G125000.t1"; gene_id "Ledus.S1G125000"
Ledus.S1	AUGUSTUS	CDS	12846603	12846926	0.66	+	0	transcript_id "Ledus.S1G125000.t1"; gene_id "Ledus.S1G125000"
Ledus.S1	AUGUSTUS	exon	12846603	12846926	.	+	.	transcript_id "Ledus.S1G125000.t1"; gene_id "Ledus.S1G125000"
Ledus.S1	AUGUSTUS	stop_codon	12846927	12846929	.	+	0	transcript_id "Ledus.S1G125000.t1"; gene_id "Ledus.S1G125000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8274.t1 is derived from g12945.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10349567	10354820	.	+	.	Ledus.S5G105200
Ledus.S5	AUGUSTUS	transcript	10349567	10354820	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	start_codon	10349567	10349569	.	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10349567	10349722	0.89	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10349567	10349722	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10349723	10349817	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10349818	10349985	1	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10349818	10349985	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10349986	10350075	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10350076	10350114	0.99	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10350076	10350114	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10350115	10350330	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10350331	10350474	0.99	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10350331	10350474	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10350475	10350606	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10350607	10350831	1	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10350607	10350831	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10350832	10350942	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10350943	10351074	0.98	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10350943	10351074	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10351075	10351303	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10351304	10351399	1	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10351304	10351399	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10351400	10351570	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10351571	10351732	1	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10351571	10351732	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10351733	10351916	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10351917	10352235	0.74	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10351917	10352235	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10352236	10352338	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10352339	10352464	0.68	+	2	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10352339	10352464	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10352465	10352582	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10352583	10352652	0.99	+	2	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10352583	10352652	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10352653	10352783	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10352784	10352844	1	+	1	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10352784	10352844	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10352845	10352986	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10352987	10353493	0.65	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10352987	10353493	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10353494	10353574	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10353575	10353964	0.92	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10353575	10353964	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10353965	10354068	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10354069	10354103	1	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10354069	10354103	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10354104	10354234	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10354235	10354820	0.99	+	1	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10354235	10354820	.	+	.	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	stop_codon	10354821	10354823	.	+	0	transcript_id "Ledus.S5G105200.t1"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	transcript	10349567	10354820	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	start_codon	10349567	10349569	.	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10349567	10349722	0.9	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10349567	10349722	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10349723	10349817	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10349818	10349985	1	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10349818	10349985	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10349986	10350142	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10350143	10350226	1	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10350143	10350226	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10350227	10350330	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10350331	10350474	1	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10350331	10350474	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10350475	10350606	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10350607	10350831	0.98	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10350607	10350831	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10350832	10350942	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10350943	10351074	0.98	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10350943	10351074	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10351075	10351303	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10351304	10351399	1	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10351304	10351399	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10351400	10351570	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10351571	10351732	1	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10351571	10351732	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10351733	10351916	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10351917	10352235	0.72	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10351917	10352235	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10352236	10352338	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10352339	10352464	0.68	+	2	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10352339	10352464	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10352465	10352582	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10352583	10352652	0.98	+	2	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10352583	10352652	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10352653	10352783	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10352784	10352844	1	+	1	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10352784	10352844	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10352845	10352986	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10352987	10353493	0.6	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10352987	10353493	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10353494	10353574	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10353575	10353964	0.92	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10353575	10353964	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10353965	10354068	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10354069	10354103	1	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10354069	10354103	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	intron	10354104	10354234	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	CDS	10354235	10354820	1	+	1	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	exon	10354235	10354820	.	+	.	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
Ledus.S5	AUGUSTUS	stop_codon	10354821	10354823	.	+	0	transcript_id "Ledus.S5G105200.t2"; gene_id "Ledus.S5G105200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4498.t1 is derived from g1934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17370508	17371119	.	+	.	Ledus.S1G191900
Ledus.S1	AUGUSTUS	transcript	17370508	17371119	.	+	.	transcript_id "Ledus.S1G191900.t1"; gene_id "Ledus.S1G191900"
Ledus.S1	AUGUSTUS	start_codon	17370508	17370510	.	+	0	transcript_id "Ledus.S1G191900.t1"; gene_id "Ledus.S1G191900"
Ledus.S1	AUGUSTUS	CDS	17370508	17371119	0.96	+	0	transcript_id "Ledus.S1G191900.t1"; gene_id "Ledus.S1G191900"
Ledus.S1	AUGUSTUS	exon	17370508	17371119	.	+	.	transcript_id "Ledus.S1G191900.t1"; gene_id "Ledus.S1G191900"
Ledus.S1	AUGUSTUS	stop_codon	17371120	17371122	.	+	0	transcript_id "Ledus.S1G191900.t1"; gene_id "Ledus.S1G191900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2247.t1 is derived from g9110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16455739	16456146	.	-	.	Ledus.S2G212900
Ledus.S2	AUGUSTUS	transcript	16455739	16456146	.	-	.	transcript_id "Ledus.S2G212900.t1"; gene_id "Ledus.S2G212900"
Ledus.S2	AUGUSTUS	stop_codon	16455736	16455738	.	-	0	transcript_id "Ledus.S2G212900.t1"; gene_id "Ledus.S2G212900"
Ledus.S2	AUGUSTUS	CDS	16455739	16456146	0.32	-	0	transcript_id "Ledus.S2G212900.t1"; gene_id "Ledus.S2G212900"
Ledus.S2	AUGUSTUS	exon	16455739	16456146	.	-	.	transcript_id "Ledus.S2G212900.t1"; gene_id "Ledus.S2G212900"
Ledus.S2	AUGUSTUS	start_codon	16456144	16456146	.	-	0	transcript_id "Ledus.S2G212900.t1"; gene_id "Ledus.S2G212900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3701.t1 is derived from g1137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11003080	11005346	.	-	.	Ledus.S1G112200
Ledus.S1	AUGUSTUS	transcript	11003080	11005346	.	-	.	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	stop_codon	11003077	11003079	.	-	0	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	CDS	11003080	11003445	0.36	-	0	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	exon	11003080	11003445	.	-	.	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	intron	11003446	11003546	.	-	.	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	CDS	11003547	11003958	0.35	-	1	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	exon	11003547	11003958	.	-	.	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	intron	11003959	11004025	.	-	.	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	CDS	11004026	11004936	0.71	-	0	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	exon	11004026	11004936	.	-	.	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	intron	11004937	11005061	.	-	.	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	CDS	11005062	11005346	0.67	-	0	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	exon	11005062	11005346	.	-	.	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
Ledus.S1	AUGUSTUS	start_codon	11005344	11005346	.	-	0	transcript_id "Ledus.S1G112200.t1"; gene_id "Ledus.S1G112200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4848.t1 is derived from g2286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20190337	20193225	.	-	.	Ledus.S1G226900
Ledus.S1	AUGUSTUS	transcript	20190337	20193225	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	stop_codon	20190334	20190336	.	-	0	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	CDS	20190337	20190562	1	-	1	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	exon	20190337	20190562	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	intron	20190563	20190656	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	CDS	20190657	20190789	1	-	2	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	exon	20190657	20190789	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	intron	20190790	20190879	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	CDS	20190880	20190996	1	-	2	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	exon	20190880	20190996	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	intron	20190997	20191112	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	CDS	20191113	20191209	0.98	-	0	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	exon	20191113	20191209	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	intron	20191210	20191307	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	CDS	20191308	20191415	0.95	-	0	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	exon	20191308	20191415	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	intron	20191416	20191527	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	CDS	20191528	20191674	0.95	-	0	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	exon	20191528	20191674	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	intron	20191675	20191821	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	CDS	20191822	20191924	1	-	1	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	exon	20191822	20191924	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	intron	20191925	20192011	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	CDS	20192012	20192122	1	-	1	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	exon	20192012	20192122	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	intron	20192123	20192230	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	CDS	20192231	20192366	0.94	-	2	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	exon	20192231	20192366	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	intron	20192367	20192488	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	CDS	20192489	20192660	1	-	0	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	exon	20192489	20192660	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	intron	20192661	20192760	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	CDS	20192761	20193225	0.43	-	0	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	exon	20192761	20193225	.	-	.	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
Ledus.S1	AUGUSTUS	start_codon	20193223	20193225	.	-	0	transcript_id "Ledus.S1G226900.t1"; gene_id "Ledus.S1G226900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3329.t1 is derived from g764.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7492194	7494194	.	+	.	Ledus.S1G075000
Ledus.S1	AUGUSTUS	transcript	7492194	7494194	.	+	.	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	start_codon	7492194	7492196	.	+	0	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	CDS	7492194	7492395	0.97	+	0	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	exon	7492194	7492395	.	+	.	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	intron	7492396	7492490	.	+	.	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	CDS	7492491	7492653	0.57	+	2	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	exon	7492491	7492653	.	+	.	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	intron	7492654	7493171	.	+	.	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	CDS	7493172	7493211	0.65	+	1	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	exon	7493172	7493211	.	+	.	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	intron	7493212	7493325	.	+	.	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	CDS	7493326	7493612	0.67	+	0	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	exon	7493326	7493612	.	+	.	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	intron	7493613	7493728	.	+	.	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	CDS	7493729	7494194	0.94	+	1	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	exon	7493729	7494194	.	+	.	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
Ledus.S1	AUGUSTUS	stop_codon	7494195	7494197	.	+	0	transcript_id "Ledus.S1G075000.t1"; gene_id "Ledus.S1G075000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11730.t1 is derived from g5349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6307503	6307706	.	-	.	Ledus.S4G088600
Ledus.S4	AUGUSTUS	transcript	6307503	6307706	.	-	.	transcript_id "Ledus.S4G088600.t1"; gene_id "Ledus.S4G088600"
Ledus.S4	AUGUSTUS	stop_codon	6307500	6307502	.	-	0	transcript_id "Ledus.S4G088600.t1"; gene_id "Ledus.S4G088600"
Ledus.S4	AUGUSTUS	CDS	6307503	6307706	0.72	-	0	transcript_id "Ledus.S4G088600.t1"; gene_id "Ledus.S4G088600"
Ledus.S4	AUGUSTUS	exon	6307503	6307706	.	-	.	transcript_id "Ledus.S4G088600.t1"; gene_id "Ledus.S4G088600"
Ledus.S4	AUGUSTUS	start_codon	6307704	6307706	.	-	0	transcript_id "Ledus.S4G088600.t1"; gene_id "Ledus.S4G088600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2423.t1 is derived from g9286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18054151	18055566	.	-	.	Ledus.S2G230500
Ledus.S2	AUGUSTUS	transcript	18054271	18055566	.	-	.	transcript_id "Ledus.S2G230500.t1"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	stop_codon	18054111	18054113	.	-	0	transcript_id "Ledus.S2G230500.t1"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	CDS	18054271	18054587	0.82	-	2	transcript_id "Ledus.S2G230500.t1"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	exon	18054271	18054587	.	-	.	transcript_id "Ledus.S2G230500.t1"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	intron	18054588	18054733	.	-	.	transcript_id "Ledus.S2G230500.t1"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	CDS	18054734	18055126	0.8	-	2	transcript_id "Ledus.S2G230500.t1"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	exon	18054734	18055126	.	-	.	transcript_id "Ledus.S2G230500.t1"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	intron	18055127	18055232	.	-	.	transcript_id "Ledus.S2G230500.t1"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	CDS	18055233	18055566	0.71	-	0	transcript_id "Ledus.S2G230500.t1"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	exon	18055233	18055566	.	-	.	transcript_id "Ledus.S2G230500.t1"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	start_codon	18055564	18055566	.	-	0	transcript_id "Ledus.S2G230500.t1"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	transcript	18054151	18055566	.	-	.	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	stop_codon	18054148	18054150	.	-	0	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	CDS	18054151	18054174	1	-	0	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	exon	18054151	18054174	.	-	.	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	intron	18054175	18054270	.	-	.	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	CDS	18054271	18054587	0.81	-	2	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	exon	18054271	18054587	.	-	.	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	intron	18054588	18054733	.	-	.	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	CDS	18054734	18055126	0.78	-	2	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	exon	18054734	18055126	.	-	.	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	intron	18055127	18055232	.	-	.	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	CDS	18055233	18055566	0.66	-	0	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	exon	18055233	18055566	.	-	.	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
Ledus.S2	AUGUSTUS	start_codon	18055564	18055566	.	-	0	transcript_id "Ledus.S2G230500.t2"; gene_id "Ledus.S2G230500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6164.t1 is derived from g3607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29338616	29342252	.	+	.	Ledus.S1G358500
Ledus.S1	AUGUSTUS	transcript	29338616	29342252	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	start_codon	29338616	29338618	.	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29338616	29338987	0.99	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29338616	29338987	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29338988	29339077	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29339078	29339221	1	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29339078	29339221	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29339222	29339339	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29339340	29339449	0.86	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29339340	29339449	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29339450	29339537	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29339538	29339649	1	+	1	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29339538	29339649	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29339650	29339761	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29339762	29339833	0.74	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29339762	29339833	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29339834	29339940	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29339941	29340032	0.96	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29339941	29340032	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29340033	29340185	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29340186	29340306	1	+	1	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29340186	29340306	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29340307	29340393	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29340394	29340516	1	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29340394	29340516	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29340517	29340664	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29340665	29340860	1	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29340665	29340860	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29340861	29340960	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29340961	29341148	1	+	2	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29340961	29341148	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29341149	29341293	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29341294	29341365	1	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29341294	29341365	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29341366	29341469	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29341470	29341568	1	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29341470	29341568	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29341569	29341716	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29341717	29341797	0.97	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29341717	29341797	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29341798	29341899	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29341900	29341957	1	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29341900	29341957	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	intron	29341958	29342058	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	CDS	29342059	29342252	0.95	+	2	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	exon	29342059	29342252	.	+	.	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
Ledus.S1	AUGUSTUS	stop_codon	29342253	29342255	.	+	0	transcript_id "Ledus.S1G358500.t1"; gene_id "Ledus.S1G358500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9303.t1 is derived from g10333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5885453	5886352	.	+	.	Ledus.S3G078000
Ledus.S3	AUGUSTUS	transcript	5885453	5886352	.	+	.	transcript_id "Ledus.S3G078000.t1"; gene_id "Ledus.S3G078000"
Ledus.S3	AUGUSTUS	start_codon	5885453	5885455	.	+	0	transcript_id "Ledus.S3G078000.t1"; gene_id "Ledus.S3G078000"
Ledus.S3	AUGUSTUS	CDS	5885453	5886352	0.39	+	0	transcript_id "Ledus.S3G078000.t1"; gene_id "Ledus.S3G078000"
Ledus.S3	AUGUSTUS	exon	5885453	5886352	.	+	.	transcript_id "Ledus.S3G078000.t1"; gene_id "Ledus.S3G078000"
Ledus.S3	AUGUSTUS	stop_codon	5886353	5886355	.	+	0	transcript_id "Ledus.S3G078000.t1"; gene_id "Ledus.S3G078000"
# This transcript jg10037.t2 is derived from g11067.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10038.t1 is derived from g11068.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12121724	12125968	.	-	.	Ledus.S3G151500
Ledus.S3	AUGUSTUS	transcript	12123370	12125968	.	-	.	transcript_id "Ledus.S3G151500.t1"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	stop_codon	12123367	12123369	.	-	0	transcript_id "Ledus.S3G151500.t1"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	CDS	12123370	12123381	0.51	-	0	transcript_id "Ledus.S3G151500.t1"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	exon	12123370	12123381	.	-	.	transcript_id "Ledus.S3G151500.t1"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	intron	12123382	12123511	.	-	.	transcript_id "Ledus.S3G151500.t1"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	CDS	12123512	12125968	0.71	-	0	transcript_id "Ledus.S3G151500.t1"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	exon	12123512	12125968	.	-	.	transcript_id "Ledus.S3G151500.t1"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	start_codon	12125966	12125968	.	-	0	transcript_id "Ledus.S3G151500.t1"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	transcript	12121724	12125833	.	-	.	transcript_id "Ledus.S3G151500.t2"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	stop_codon	12121721	12121723	.	-	0	transcript_id "Ledus.S3G151500.t2"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	CDS	12121724	12125833	1	-	0	transcript_id "Ledus.S3G151500.t2"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	exon	12121724	12125833	.	-	.	transcript_id "Ledus.S3G151500.t2"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	start_codon	12125831	12125833	.	-	0	transcript_id "Ledus.S3G151500.t2"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	transcript	12121724	12125968	.	-	.	transcript_id "Ledus.S3G151500.t3"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	stop_codon	12121721	12121723	.	-	0	transcript_id "Ledus.S3G151500.t3"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	CDS	12121724	12125968	1	-	0	transcript_id "Ledus.S3G151500.t3"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	exon	12121724	12125968	.	-	.	transcript_id "Ledus.S3G151500.t3"; gene_id "Ledus.S3G151500"
Ledus.S3	AUGUSTUS	start_codon	12125966	12125968	.	-	0	transcript_id "Ledus.S3G151500.t3"; gene_id "Ledus.S3G151500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1600.t1 is derived from g8461.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11309301	11310642	.	+	.	Ledus.S2G148200
Ledus.S2	AUGUSTUS	transcript	11309301	11310642	.	+	.	transcript_id "Ledus.S2G148200.t1"; gene_id "Ledus.S2G148200"
Ledus.S2	AUGUSTUS	start_codon	11309301	11309303	.	+	0	transcript_id "Ledus.S2G148200.t1"; gene_id "Ledus.S2G148200"
Ledus.S2	AUGUSTUS	CDS	11309301	11309516	1	+	0	transcript_id "Ledus.S2G148200.t1"; gene_id "Ledus.S2G148200"
Ledus.S2	AUGUSTUS	exon	11309301	11309516	.	+	.	transcript_id "Ledus.S2G148200.t1"; gene_id "Ledus.S2G148200"
Ledus.S2	AUGUSTUS	intron	11309517	11309598	.	+	.	transcript_id "Ledus.S2G148200.t1"; gene_id "Ledus.S2G148200"
Ledus.S2	AUGUSTUS	CDS	11309599	11310642	0.78	+	0	transcript_id "Ledus.S2G148200.t1"; gene_id "Ledus.S2G148200"
Ledus.S2	AUGUSTUS	exon	11309599	11310642	.	+	.	transcript_id "Ledus.S2G148200.t1"; gene_id "Ledus.S2G148200"
Ledus.S2	AUGUSTUS	stop_codon	11310643	11310645	.	+	0	transcript_id "Ledus.S2G148200.t1"; gene_id "Ledus.S2G148200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9805.t1 is derived from g10835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9957237	9958586	.	-	.	Ledus.S3G128200
Ledus.S3	AUGUSTUS	transcript	9957237	9958586	.	-	.	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	stop_codon	9957234	9957236	.	-	0	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	CDS	9957237	9957306	1	-	1	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	exon	9957237	9957306	.	-	.	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	intron	9957307	9957393	.	-	.	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	CDS	9957394	9957569	1	-	0	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	exon	9957394	9957569	.	-	.	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	intron	9957570	9957648	.	-	.	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	CDS	9957649	9957792	1	-	0	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	exon	9957649	9957792	.	-	.	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	intron	9957793	9957859	.	-	.	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	CDS	9957860	9957922	1	-	0	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	exon	9957860	9957922	.	-	.	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	intron	9957923	9958052	.	-	.	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	CDS	9958053	9958586	0.94	-	0	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	exon	9958053	9958586	.	-	.	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
Ledus.S3	AUGUSTUS	start_codon	9958584	9958586	.	-	0	transcript_id "Ledus.S3G128200.t1"; gene_id "Ledus.S3G128200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11632.t1 is derived from g5251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5687664	5691336	.	-	.	Ledus.S4G078800
Ledus.S4	AUGUSTUS	transcript	5687664	5691336	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	stop_codon	5687661	5687663	.	-	0	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	CDS	5687664	5688373	1	-	2	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	exon	5687664	5688373	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	intron	5688374	5688465	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	CDS	5688466	5689351	0.94	-	0	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	exon	5688466	5689351	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	intron	5689352	5689478	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	CDS	5689479	5689888	0.98	-	2	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	exon	5689479	5689888	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	intron	5689889	5689990	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	CDS	5689991	5690134	1	-	2	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	exon	5689991	5690134	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	intron	5690135	5690240	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	CDS	5690241	5690568	0.98	-	0	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	exon	5690241	5690568	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	intron	5690569	5690756	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	CDS	5690757	5690983	0.22	-	2	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	exon	5690757	5690983	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	intron	5690984	5691185	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	CDS	5691186	5691336	0.71	-	0	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	exon	5691186	5691336	.	-	.	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
Ledus.S4	AUGUSTUS	start_codon	5691334	5691336	.	-	0	transcript_id "Ledus.S4G078800.t1"; gene_id "Ledus.S4G078800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3886.t1 is derived from g1322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13399895	13400283	.	+	.	Ledus.S1G130700
Ledus.S1	AUGUSTUS	transcript	13399895	13400283	.	+	.	transcript_id "Ledus.S1G130700.t1"; gene_id "Ledus.S1G130700"
Ledus.S1	AUGUSTUS	start_codon	13399895	13399897	.	+	0	transcript_id "Ledus.S1G130700.t1"; gene_id "Ledus.S1G130700"
Ledus.S1	AUGUSTUS	CDS	13399895	13400170	0.81	+	0	transcript_id "Ledus.S1G130700.t1"; gene_id "Ledus.S1G130700"
Ledus.S1	AUGUSTUS	exon	13399895	13400170	.	+	.	transcript_id "Ledus.S1G130700.t1"; gene_id "Ledus.S1G130700"
Ledus.S1	AUGUSTUS	intron	13400171	13400280	.	+	.	transcript_id "Ledus.S1G130700.t1"; gene_id "Ledus.S1G130700"
Ledus.S1	AUGUSTUS	CDS	13400281	13400283	1	+	0	transcript_id "Ledus.S1G130700.t1"; gene_id "Ledus.S1G130700"
Ledus.S1	AUGUSTUS	exon	13400281	13400283	.	+	.	transcript_id "Ledus.S1G130700.t1"; gene_id "Ledus.S1G130700"
Ledus.S1	AUGUSTUS	stop_codon	13400284	13400286	.	+	0	transcript_id "Ledus.S1G130700.t1"; gene_id "Ledus.S1G130700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2107.t1 is derived from g8970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14764515	14766957	.	+	.	Ledus.S2G198900
Ledus.S2	AUGUSTUS	transcript	14764515	14766957	.	+	.	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	start_codon	14764515	14764517	.	+	0	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	CDS	14764515	14764564	0.97	+	0	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	exon	14764515	14764564	.	+	.	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	intron	14764565	14764652	.	+	.	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	CDS	14764653	14764701	0.97	+	1	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	exon	14764653	14764701	.	+	.	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	intron	14764702	14764784	.	+	.	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	CDS	14764785	14764923	0.6	+	0	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	exon	14764785	14764923	.	+	.	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	intron	14764924	14765173	.	+	.	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	CDS	14765174	14765364	0.74	+	2	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	exon	14765174	14765364	.	+	.	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	intron	14765365	14765562	.	+	.	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	CDS	14765563	14766957	0.78	+	0	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	exon	14765563	14766957	.	+	.	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
Ledus.S2	AUGUSTUS	stop_codon	14766958	14766960	.	+	0	transcript_id "Ledus.S2G198900.t1"; gene_id "Ledus.S2G198900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6387.t1 is derived from g3830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30964756	30965655	.	+	.	Ledus.S1G380800
Ledus.S1	AUGUSTUS	transcript	30964756	30965655	.	+	.	transcript_id "Ledus.S1G380800.t1"; gene_id "Ledus.S1G380800"
Ledus.S1	AUGUSTUS	start_codon	30964756	30964758	.	+	0	transcript_id "Ledus.S1G380800.t1"; gene_id "Ledus.S1G380800"
Ledus.S1	AUGUSTUS	CDS	30964756	30965655	1	+	0	transcript_id "Ledus.S1G380800.t1"; gene_id "Ledus.S1G380800"
Ledus.S1	AUGUSTUS	exon	30964756	30965655	.	+	.	transcript_id "Ledus.S1G380800.t1"; gene_id "Ledus.S1G380800"
Ledus.S1	AUGUSTUS	stop_codon	30965656	30965658	.	+	0	transcript_id "Ledus.S1G380800.t1"; gene_id "Ledus.S1G380800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1614.t1 is derived from g8475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11429996	11434831	.	+	.	Ledus.S2G149600
Ledus.S2	AUGUSTUS	transcript	11429996	11434831	.	+	.	transcript_id "Ledus.S2G149600.t1"; gene_id "Ledus.S2G149600"
Ledus.S2	AUGUSTUS	start_codon	11429996	11429998	.	+	0	transcript_id "Ledus.S2G149600.t1"; gene_id "Ledus.S2G149600"
Ledus.S2	AUGUSTUS	CDS	11429996	11434831	1	+	0	transcript_id "Ledus.S2G149600.t1"; gene_id "Ledus.S2G149600"
Ledus.S2	AUGUSTUS	exon	11429996	11434831	.	+	.	transcript_id "Ledus.S2G149600.t1"; gene_id "Ledus.S2G149600"
Ledus.S2	AUGUSTUS	stop_codon	11434832	11434834	.	+	0	transcript_id "Ledus.S2G149600.t1"; gene_id "Ledus.S2G149600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg200.t1 is derived from g7061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	780424	781392	.	+	.	Ledus.S2G008200
Ledus.S2	AUGUSTUS	transcript	780424	781392	.	+	.	transcript_id "Ledus.S2G008200.t1"; gene_id "Ledus.S2G008200"
Ledus.S2	AUGUSTUS	start_codon	780424	780426	.	+	0	transcript_id "Ledus.S2G008200.t1"; gene_id "Ledus.S2G008200"
Ledus.S2	AUGUSTUS	CDS	780424	781392	1	+	0	transcript_id "Ledus.S2G008200.t1"; gene_id "Ledus.S2G008200"
Ledus.S2	AUGUSTUS	exon	780424	781392	.	+	.	transcript_id "Ledus.S2G008200.t1"; gene_id "Ledus.S2G008200"
Ledus.S2	AUGUSTUS	stop_codon	781393	781395	.	+	0	transcript_id "Ledus.S2G008200.t1"; gene_id "Ledus.S2G008200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4542.t1 is derived from g1979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17597487	17598277	.	-	.	Ledus.S1G196300
Ledus.S1	AUGUSTUS	transcript	17597487	17598277	.	-	.	transcript_id "Ledus.S1G196300.t1"; gene_id "Ledus.S1G196300"
Ledus.S1	AUGUSTUS	stop_codon	17597484	17597486	.	-	0	transcript_id "Ledus.S1G196300.t1"; gene_id "Ledus.S1G196300"
Ledus.S1	AUGUSTUS	CDS	17597487	17597499	1	-	1	transcript_id "Ledus.S1G196300.t1"; gene_id "Ledus.S1G196300"
Ledus.S1	AUGUSTUS	exon	17597487	17597499	.	-	.	transcript_id "Ledus.S1G196300.t1"; gene_id "Ledus.S1G196300"
Ledus.S1	AUGUSTUS	intron	17597500	17597740	.	-	.	transcript_id "Ledus.S1G196300.t1"; gene_id "Ledus.S1G196300"
Ledus.S1	AUGUSTUS	CDS	17597741	17597848	1	-	1	transcript_id "Ledus.S1G196300.t1"; gene_id "Ledus.S1G196300"
Ledus.S1	AUGUSTUS	exon	17597741	17597848	.	-	.	transcript_id "Ledus.S1G196300.t1"; gene_id "Ledus.S1G196300"
Ledus.S1	AUGUSTUS	intron	17597849	17597939	.	-	.	transcript_id "Ledus.S1G196300.t1"; gene_id "Ledus.S1G196300"
Ledus.S1	AUGUSTUS	CDS	17597940	17598277	1	-	0	transcript_id "Ledus.S1G196300.t1"; gene_id "Ledus.S1G196300"
Ledus.S1	AUGUSTUS	exon	17597940	17598277	.	-	.	transcript_id "Ledus.S1G196300.t1"; gene_id "Ledus.S1G196300"
Ledus.S1	AUGUSTUS	start_codon	17598275	17598277	.	-	0	transcript_id "Ledus.S1G196300.t1"; gene_id "Ledus.S1G196300"
# This transcript jg948.t1 is derived from g7809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6260200	6264314	.	-	.	Ledus.S2G083000
Ledus.S2	AUGUSTUS	transcript	6260773	6264314	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	stop_codon	6260770	6260772	.	-	0	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6260773	6260914	0.86	-	1	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6260773	6260914	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6260915	6261071	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6261072	6261157	0.99	-	0	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6261072	6261157	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6261158	6261276	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6261277	6262534	0.71	-	1	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6261277	6262534	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6262535	6262608	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6262609	6262726	1	-	2	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6262609	6262726	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6262727	6262835	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6262836	6262992	0.89	-	0	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6262836	6262992	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6262993	6263112	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6263113	6263243	1	-	2	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6263113	6263243	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6263244	6263416	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6263417	6264314	0.53	-	0	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6263417	6264314	.	-	.	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	start_codon	6264312	6264314	.	-	0	transcript_id "Ledus.S2G083000.t1"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	transcript	6260200	6264314	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	stop_codon	6260197	6260199	.	-	0	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6260200	6260232	1	-	0	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6260200	6260232	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6260233	6260558	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6260559	6260666	0.74	-	0	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6260559	6260666	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6260667	6260790	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6260791	6260914	0.9	-	1	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6260791	6260914	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6260915	6261071	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6261072	6261157	1	-	0	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6261072	6261157	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6261158	6261276	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6261277	6262534	0.79	-	1	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6261277	6262534	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6262535	6262608	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6262609	6262726	1	-	2	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6262609	6262726	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6262727	6262835	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6262836	6262992	0.9	-	0	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6262836	6262992	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6262993	6263112	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6263113	6263243	0.99	-	2	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6263113	6263243	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	intron	6263244	6263416	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	CDS	6263417	6264314	0.53	-	0	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	exon	6263417	6264314	.	-	.	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
Ledus.S2	AUGUSTUS	start_codon	6264312	6264314	.	-	0	transcript_id "Ledus.S2G083000.t2"; gene_id "Ledus.S2G083000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7206.t1 is derived from g6737.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2141329	2142381	.	+	.	Ledus.C7G026700
Ledus.C7	AUGUSTUS	transcript	2141329	2142381	.	+	.	transcript_id "Ledus.C7G026700.t1"; gene_id "Ledus.C7G026700"
Ledus.C7	AUGUSTUS	start_codon	2141329	2141331	.	+	0	transcript_id "Ledus.C7G026700.t1"; gene_id "Ledus.C7G026700"
Ledus.C7	AUGUSTUS	CDS	2141329	2141769	0.32	+	0	transcript_id "Ledus.C7G026700.t1"; gene_id "Ledus.C7G026700"
Ledus.C7	AUGUSTUS	exon	2141329	2141769	.	+	.	transcript_id "Ledus.C7G026700.t1"; gene_id "Ledus.C7G026700"
Ledus.C7	AUGUSTUS	intron	2141770	2141985	.	+	.	transcript_id "Ledus.C7G026700.t1"; gene_id "Ledus.C7G026700"
Ledus.C7	AUGUSTUS	CDS	2141986	2142381	0.33	+	0	transcript_id "Ledus.C7G026700.t1"; gene_id "Ledus.C7G026700"
Ledus.C7	AUGUSTUS	exon	2141986	2142381	.	+	.	transcript_id "Ledus.C7G026700.t1"; gene_id "Ledus.C7G026700"
Ledus.C7	AUGUSTUS	stop_codon	2142382	2142384	.	+	0	transcript_id "Ledus.C7G026700.t1"; gene_id "Ledus.C7G026700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1475.t1 is derived from g8336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10394285	10396638	.	-	.	Ledus.S2G135700
Ledus.S2	AUGUSTUS	transcript	10394285	10396638	.	-	.	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	stop_codon	10394282	10394284	.	-	0	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	CDS	10394285	10395104	0.81	-	1	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	exon	10394285	10395104	.	-	.	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	intron	10395105	10395207	.	-	.	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	CDS	10395208	10395487	0.97	-	2	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	exon	10395208	10395487	.	-	.	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	intron	10395488	10395573	.	-	.	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	CDS	10395574	10395900	0.97	-	2	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	exon	10395574	10395900	.	-	.	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	intron	10395901	10396001	.	-	.	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	CDS	10396002	10396377	1	-	0	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	exon	10396002	10396377	.	-	.	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	intron	10396378	10396461	.	-	.	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	CDS	10396462	10396518	1	-	0	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	exon	10396462	10396518	.	-	.	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	intron	10396519	10396605	.	-	.	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	CDS	10396606	10396638	1	-	0	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	exon	10396606	10396638	.	-	.	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
Ledus.S2	AUGUSTUS	start_codon	10396636	10396638	.	-	0	transcript_id "Ledus.S2G135700.t1"; gene_id "Ledus.S2G135700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13165.t1 is derived from g6975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7860405	7863453	.	-	.	Ledus.S6G022700
Ledus.S6	AUGUSTUS	transcript	7860405	7863453	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	stop_codon	7860402	7860404	.	-	0	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	CDS	7860405	7860556	0.98	-	2	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	exon	7860405	7860556	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	intron	7860557	7860641	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	CDS	7860642	7860751	1	-	1	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	exon	7860642	7860751	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	intron	7860752	7860871	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	CDS	7860872	7860933	1	-	0	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	exon	7860872	7860933	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	intron	7860934	7861006	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	CDS	7861007	7861120	1	-	0	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	exon	7861007	7861120	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	intron	7861121	7861332	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	CDS	7861333	7861562	0.99	-	2	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	exon	7861333	7861562	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	intron	7861563	7861672	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	CDS	7861673	7862437	0.91	-	2	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	exon	7861673	7862437	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	intron	7862438	7863227	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	CDS	7863228	7863453	0.68	-	0	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	exon	7863228	7863453	.	-	.	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
Ledus.S6	AUGUSTUS	start_codon	7863451	7863453	.	-	0	transcript_id "Ledus.S6G022700.t1"; gene_id "Ledus.S6G022700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4616.t1 is derived from g2053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18258594	18260198	.	-	.	Ledus.S1G203700
Ledus.S1	AUGUSTUS	transcript	18258594	18260198	.	-	.	transcript_id "Ledus.S1G203700.t1"; gene_id "Ledus.S1G203700"
Ledus.S1	AUGUSTUS	stop_codon	18258591	18258593	.	-	0	transcript_id "Ledus.S1G203700.t1"; gene_id "Ledus.S1G203700"
Ledus.S1	AUGUSTUS	CDS	18258594	18259832	0.74	-	0	transcript_id "Ledus.S1G203700.t1"; gene_id "Ledus.S1G203700"
Ledus.S1	AUGUSTUS	exon	18258594	18259832	.	-	.	transcript_id "Ledus.S1G203700.t1"; gene_id "Ledus.S1G203700"
Ledus.S1	AUGUSTUS	intron	18259833	18259923	.	-	.	transcript_id "Ledus.S1G203700.t1"; gene_id "Ledus.S1G203700"
Ledus.S1	AUGUSTUS	CDS	18259924	18259955	0.54	-	2	transcript_id "Ledus.S1G203700.t1"; gene_id "Ledus.S1G203700"
Ledus.S1	AUGUSTUS	exon	18259924	18259955	.	-	.	transcript_id "Ledus.S1G203700.t1"; gene_id "Ledus.S1G203700"
Ledus.S1	AUGUSTUS	intron	18259956	18260170	.	-	.	transcript_id "Ledus.S1G203700.t1"; gene_id "Ledus.S1G203700"
Ledus.S1	AUGUSTUS	CDS	18260171	18260198	0.98	-	0	transcript_id "Ledus.S1G203700.t1"; gene_id "Ledus.S1G203700"
Ledus.S1	AUGUSTUS	exon	18260171	18260198	.	-	.	transcript_id "Ledus.S1G203700.t1"; gene_id "Ledus.S1G203700"
Ledus.S1	AUGUSTUS	start_codon	18260196	18260198	.	-	0	transcript_id "Ledus.S1G203700.t1"; gene_id "Ledus.S1G203700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10031.t1 is derived from g11061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12085321	12086215	.	+	.	Ledus.S3G150800
Ledus.S3	AUGUSTUS	transcript	12085321	12086215	.	+	.	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	start_codon	12085321	12085323	.	+	0	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	CDS	12085321	12085416	0.96	+	0	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	exon	12085321	12085416	.	+	.	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	intron	12085417	12085494	.	+	.	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	CDS	12085495	12085756	1	+	0	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	exon	12085495	12085756	.	+	.	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	intron	12085757	12085854	.	+	.	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	CDS	12085855	12085932	1	+	2	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	exon	12085855	12085932	.	+	.	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	intron	12085933	12086018	.	+	.	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	CDS	12086019	12086215	1	+	2	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	exon	12086019	12086215	.	+	.	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
Ledus.S3	AUGUSTUS	stop_codon	12086216	12086218	.	+	0	transcript_id "Ledus.S3G150800.t1"; gene_id "Ledus.S3G150800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2909.t1 is derived from g344.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4527160	4528234	.	+	.	Ledus.S1G033000
Ledus.S1	AUGUSTUS	transcript	4527160	4528121	.	+	.	transcript_id "Ledus.S1G033000.t1"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	start_codon	4527160	4527162	.	+	0	transcript_id "Ledus.S1G033000.t1"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	CDS	4527160	4527723	0.99	+	0	transcript_id "Ledus.S1G033000.t1"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	exon	4527160	4527723	.	+	.	transcript_id "Ledus.S1G033000.t1"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	intron	4527724	4527995	.	+	.	transcript_id "Ledus.S1G033000.t1"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	CDS	4527996	4528121	1	+	0	transcript_id "Ledus.S1G033000.t1"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	exon	4527996	4528121	.	+	.	transcript_id "Ledus.S1G033000.t1"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	stop_codon	4528122	4528124	.	+	0	transcript_id "Ledus.S1G033000.t1"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	transcript	4527160	4528234	.	+	.	transcript_id "Ledus.S1G033000.t2"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	start_codon	4527160	4527162	.	+	0	transcript_id "Ledus.S1G033000.t2"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	CDS	4527160	4527723	0.98	+	0	transcript_id "Ledus.S1G033000.t2"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	exon	4527160	4527723	.	+	.	transcript_id "Ledus.S1G033000.t2"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	intron	4527724	4528165	.	+	.	transcript_id "Ledus.S1G033000.t2"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	CDS	4528166	4528234	1	+	0	transcript_id "Ledus.S1G033000.t2"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	exon	4528166	4528234	.	+	.	transcript_id "Ledus.S1G033000.t2"; gene_id "Ledus.S1G033000"
Ledus.S1	AUGUSTUS	stop_codon	4528235	4528237	.	+	0	transcript_id "Ledus.S1G033000.t2"; gene_id "Ledus.S1G033000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6196.t1 is derived from g3639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29570585	29570908	.	-	.	Ledus.S1G361700
Ledus.S1	AUGUSTUS	transcript	29570585	29570908	.	-	.	transcript_id "Ledus.S1G361700.t1"; gene_id "Ledus.S1G361700"
Ledus.S1	AUGUSTUS	stop_codon	29570582	29570584	.	-	0	transcript_id "Ledus.S1G361700.t1"; gene_id "Ledus.S1G361700"
Ledus.S1	AUGUSTUS	CDS	29570585	29570908	0.38	-	0	transcript_id "Ledus.S1G361700.t1"; gene_id "Ledus.S1G361700"
Ledus.S1	AUGUSTUS	exon	29570585	29570908	.	-	.	transcript_id "Ledus.S1G361700.t1"; gene_id "Ledus.S1G361700"
Ledus.S1	AUGUSTUS	start_codon	29570906	29570908	.	-	0	transcript_id "Ledus.S1G361700.t1"; gene_id "Ledus.S1G361700"
# This transcript jg12600.t2 is derived from g6222.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12600.t3 is derived from g6222.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12601.t1 is derived from g6223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13109808	13111206	.	-	.	Ledus.S4G175700
Ledus.S4	AUGUSTUS	transcript	13109808	13111206	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	stop_codon	13109805	13109807	.	-	0	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	CDS	13109808	13109891	1	-	0	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	exon	13109808	13109891	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	intron	13109892	13109971	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	CDS	13109972	13110022	0.99	-	0	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	exon	13109972	13110022	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	intron	13110023	13110110	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	CDS	13110111	13110263	0.91	-	0	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	exon	13110111	13110263	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	intron	13110264	13110372	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	CDS	13110373	13110484	1	-	1	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	exon	13110373	13110484	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	intron	13110485	13110572	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	CDS	13110573	13110691	0.97	-	0	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	exon	13110573	13110691	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	intron	13110692	13110778	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	CDS	13110779	13111038	1	-	2	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	exon	13110779	13111038	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	intron	13111039	13111118	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	CDS	13111119	13111206	0.46	-	0	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	exon	13111119	13111206	.	-	.	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
Ledus.S4	AUGUSTUS	start_codon	13111204	13111206	.	-	0	transcript_id "Ledus.S4G175700.t1"; gene_id "Ledus.S4G175700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9603.t1 is derived from g10633.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8290502	8292072	.	+	.	Ledus.S3G108000
Ledus.S3	AUGUSTUS	transcript	8290502	8292072	.	+	.	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	start_codon	8290502	8290504	.	+	0	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	CDS	8290502	8290945	0.32	+	0	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	exon	8290502	8290945	.	+	.	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	intron	8290946	8291365	.	+	.	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	CDS	8291366	8291434	0.8	+	0	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	exon	8291366	8291434	.	+	.	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	intron	8291435	8291722	.	+	.	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	CDS	8291723	8291839	0.99	+	0	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	exon	8291723	8291839	.	+	.	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	intron	8291840	8292003	.	+	.	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	CDS	8292004	8292072	0.99	+	0	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	exon	8292004	8292072	.	+	.	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	stop_codon	8292073	8292075	.	+	0	transcript_id "Ledus.S3G108000.t1"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	transcript	8290502	8292072	.	+	.	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	start_codon	8290502	8290504	.	+	0	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	CDS	8290502	8291123	0.33	+	0	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	exon	8290502	8291123	.	+	.	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	intron	8291124	8291187	.	+	.	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	CDS	8291188	8291261	0.7	+	2	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	exon	8291188	8291261	.	+	.	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	intron	8291262	8291722	.	+	.	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	CDS	8291723	8291839	1	+	0	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	exon	8291723	8291839	.	+	.	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	intron	8291840	8292003	.	+	.	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	CDS	8292004	8292072	0.86	+	0	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	exon	8292004	8292072	.	+	.	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	stop_codon	8292073	8292075	.	+	0	transcript_id "Ledus.S3G108000.t2"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	transcript	8290502	8292072	.	+	.	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	start_codon	8290502	8290504	.	+	0	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	CDS	8290502	8291123	0.19	+	0	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	exon	8290502	8291123	.	+	.	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	intron	8291124	8291365	.	+	.	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	CDS	8291366	8291434	0.25	+	2	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	exon	8291366	8291434	.	+	.	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	intron	8291435	8291722	.	+	.	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	CDS	8291723	8291839	0.31	+	2	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	exon	8291723	8291839	.	+	.	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	intron	8291840	8292013	.	+	.	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	CDS	8292014	8292072	0.31	+	2	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	exon	8292014	8292072	.	+	.	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
Ledus.S3	AUGUSTUS	stop_codon	8292073	8292075	.	+	0	transcript_id "Ledus.S3G108000.t3"; gene_id "Ledus.S3G108000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6069.t1 is derived from g3512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28812292	28813177	.	-	.	Ledus.S1G349000
Ledus.S1	AUGUSTUS	transcript	28812292	28813177	.	-	.	transcript_id "Ledus.S1G349000.t1"; gene_id "Ledus.S1G349000"
Ledus.S1	AUGUSTUS	stop_codon	28812289	28812291	.	-	0	transcript_id "Ledus.S1G349000.t1"; gene_id "Ledus.S1G349000"
Ledus.S1	AUGUSTUS	CDS	28812292	28812607	0.91	-	1	transcript_id "Ledus.S1G349000.t1"; gene_id "Ledus.S1G349000"
Ledus.S1	AUGUSTUS	exon	28812292	28812607	.	-	.	transcript_id "Ledus.S1G349000.t1"; gene_id "Ledus.S1G349000"
Ledus.S1	AUGUSTUS	intron	28812608	28812697	.	-	.	transcript_id "Ledus.S1G349000.t1"; gene_id "Ledus.S1G349000"
Ledus.S1	AUGUSTUS	CDS	28812698	28812912	1	-	0	transcript_id "Ledus.S1G349000.t1"; gene_id "Ledus.S1G349000"
Ledus.S1	AUGUSTUS	exon	28812698	28812912	.	-	.	transcript_id "Ledus.S1G349000.t1"; gene_id "Ledus.S1G349000"
Ledus.S1	AUGUSTUS	intron	28812913	28813039	.	-	.	transcript_id "Ledus.S1G349000.t1"; gene_id "Ledus.S1G349000"
Ledus.S1	AUGUSTUS	CDS	28813040	28813177	0.97	-	0	transcript_id "Ledus.S1G349000.t1"; gene_id "Ledus.S1G349000"
Ledus.S1	AUGUSTUS	exon	28813040	28813177	.	-	.	transcript_id "Ledus.S1G349000.t1"; gene_id "Ledus.S1G349000"
Ledus.S1	AUGUSTUS	start_codon	28813175	28813177	.	-	0	transcript_id "Ledus.S1G349000.t1"; gene_id "Ledus.S1G349000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10204.t1 is derived from g11234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13547914	13548660	.	-	.	Ledus.S3G168100
Ledus.S3	AUGUSTUS	transcript	13547914	13548660	.	-	.	transcript_id "Ledus.S3G168100.t1"; gene_id "Ledus.S3G168100"
Ledus.S3	AUGUSTUS	stop_codon	13547911	13547913	.	-	0	transcript_id "Ledus.S3G168100.t1"; gene_id "Ledus.S3G168100"
Ledus.S3	AUGUSTUS	CDS	13547914	13548386	0.99	-	2	transcript_id "Ledus.S3G168100.t1"; gene_id "Ledus.S3G168100"
Ledus.S3	AUGUSTUS	exon	13547914	13548386	.	-	.	transcript_id "Ledus.S3G168100.t1"; gene_id "Ledus.S3G168100"
Ledus.S3	AUGUSTUS	intron	13548387	13548512	.	-	.	transcript_id "Ledus.S3G168100.t1"; gene_id "Ledus.S3G168100"
Ledus.S3	AUGUSTUS	CDS	13548513	13548660	0.66	-	0	transcript_id "Ledus.S3G168100.t1"; gene_id "Ledus.S3G168100"
Ledus.S3	AUGUSTUS	exon	13548513	13548660	.	-	.	transcript_id "Ledus.S3G168100.t1"; gene_id "Ledus.S3G168100"
Ledus.S3	AUGUSTUS	start_codon	13548658	13548660	.	-	0	transcript_id "Ledus.S3G168100.t1"; gene_id "Ledus.S3G168100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6376.t1 is derived from g3819.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30900597	30904913	.	+	.	Ledus.S1G379700
Ledus.S1	AUGUSTUS	transcript	30904260	30904913	.	+	.	transcript_id "Ledus.S1G379700.t1"; gene_id "Ledus.S1G379700"
Ledus.S1	AUGUSTUS	start_codon	30904260	30904262	.	+	0	transcript_id "Ledus.S1G379700.t1"; gene_id "Ledus.S1G379700"
Ledus.S1	AUGUSTUS	CDS	30904260	30904913	0.95	+	0	transcript_id "Ledus.S1G379700.t1"; gene_id "Ledus.S1G379700"
Ledus.S1	AUGUSTUS	exon	30904260	30904913	.	+	.	transcript_id "Ledus.S1G379700.t1"; gene_id "Ledus.S1G379700"
Ledus.S1	AUGUSTUS	stop_codon	30904914	30904916	.	+	0	transcript_id "Ledus.S1G379700.t1"; gene_id "Ledus.S1G379700"
Ledus.S1	AUGUSTUS	transcript	30900597	30904913	.	+	.	transcript_id "Ledus.S1G379700.t2"; gene_id "Ledus.S1G379700"
Ledus.S1	AUGUSTUS	start_codon	30900597	30900599	.	+	0	transcript_id "Ledus.S1G379700.t2"; gene_id "Ledus.S1G379700"
Ledus.S1	AUGUSTUS	CDS	30900597	30904913	0.92	+	0	transcript_id "Ledus.S1G379700.t2"; gene_id "Ledus.S1G379700"
Ledus.S1	AUGUSTUS	exon	30900597	30904913	.	+	.	transcript_id "Ledus.S1G379700.t2"; gene_id "Ledus.S1G379700"
Ledus.S1	AUGUSTUS	stop_codon	30904914	30904916	.	+	0	transcript_id "Ledus.S1G379700.t2"; gene_id "Ledus.S1G379700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3465.t1 is derived from g900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8504994	8507502	.	+	.	Ledus.S1G088600
Ledus.S1	AUGUSTUS	transcript	8504994	8507502	.	+	.	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	start_codon	8504994	8504996	.	+	0	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	CDS	8504994	8505507	0.94	+	0	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	exon	8504994	8505507	.	+	.	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	intron	8505508	8505625	.	+	.	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	CDS	8505626	8506188	0.94	+	2	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	exon	8505626	8506188	.	+	.	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	intron	8506189	8506324	.	+	.	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	CDS	8506325	8506379	1	+	0	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	exon	8506325	8506379	.	+	.	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	intron	8506380	8506747	.	+	.	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	CDS	8506748	8507502	0.8	+	2	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	exon	8506748	8507502	.	+	.	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
Ledus.S1	AUGUSTUS	stop_codon	8507503	8507505	.	+	0	transcript_id "Ledus.S1G088600.t1"; gene_id "Ledus.S1G088600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9455.t1 is derived from g10485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7064345	7065627	.	-	.	Ledus.S3G093200
Ledus.S3	AUGUSTUS	transcript	7064345	7065627	.	-	.	transcript_id "Ledus.S3G093200.t1"; gene_id "Ledus.S3G093200"
Ledus.S3	AUGUSTUS	stop_codon	7064342	7064344	.	-	0	transcript_id "Ledus.S3G093200.t1"; gene_id "Ledus.S3G093200"
Ledus.S3	AUGUSTUS	CDS	7064345	7064799	0.19	-	2	transcript_id "Ledus.S3G093200.t1"; gene_id "Ledus.S3G093200"
Ledus.S3	AUGUSTUS	exon	7064345	7064799	.	-	.	transcript_id "Ledus.S3G093200.t1"; gene_id "Ledus.S3G093200"
Ledus.S3	AUGUSTUS	intron	7064800	7064945	.	-	.	transcript_id "Ledus.S3G093200.t1"; gene_id "Ledus.S3G093200"
Ledus.S3	AUGUSTUS	CDS	7064946	7065026	1	-	2	transcript_id "Ledus.S3G093200.t1"; gene_id "Ledus.S3G093200"
Ledus.S3	AUGUSTUS	exon	7064946	7065026	.	-	.	transcript_id "Ledus.S3G093200.t1"; gene_id "Ledus.S3G093200"
Ledus.S3	AUGUSTUS	intron	7065027	7065239	.	-	.	transcript_id "Ledus.S3G093200.t1"; gene_id "Ledus.S3G093200"
Ledus.S3	AUGUSTUS	CDS	7065240	7065627	0.99	-	0	transcript_id "Ledus.S3G093200.t1"; gene_id "Ledus.S3G093200"
Ledus.S3	AUGUSTUS	exon	7065240	7065627	.	-	.	transcript_id "Ledus.S3G093200.t1"; gene_id "Ledus.S3G093200"
Ledus.S3	AUGUSTUS	start_codon	7065625	7065627	.	-	0	transcript_id "Ledus.S3G093200.t1"; gene_id "Ledus.S3G093200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7022.t1 is derived from g6553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	866712	866945	.	+	.	Ledus.C7G008300
Ledus.C7	AUGUSTUS	transcript	866712	866945	.	+	.	transcript_id "Ledus.C7G008300.t1"; gene_id "Ledus.C7G008300"
Ledus.C7	AUGUSTUS	start_codon	866712	866714	.	+	0	transcript_id "Ledus.C7G008300.t1"; gene_id "Ledus.C7G008300"
Ledus.C7	AUGUSTUS	CDS	866712	866945	0.6	+	0	transcript_id "Ledus.C7G008300.t1"; gene_id "Ledus.C7G008300"
Ledus.C7	AUGUSTUS	exon	866712	866945	.	+	.	transcript_id "Ledus.C7G008300.t1"; gene_id "Ledus.C7G008300"
Ledus.C7	AUGUSTUS	stop_codon	866946	866948	.	+	0	transcript_id "Ledus.C7G008300.t1"; gene_id "Ledus.C7G008300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1759.t1 is derived from g8621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12363882	12366392	.	-	.	Ledus.S2G164100
Ledus.S2	AUGUSTUS	transcript	12363882	12366392	.	-	.	transcript_id "Ledus.S2G164100.t1"; gene_id "Ledus.S2G164100"
Ledus.S2	AUGUSTUS	stop_codon	12363879	12363881	.	-	0	transcript_id "Ledus.S2G164100.t1"; gene_id "Ledus.S2G164100"
Ledus.S2	AUGUSTUS	CDS	12363882	12366392	0.98	-	0	transcript_id "Ledus.S2G164100.t1"; gene_id "Ledus.S2G164100"
Ledus.S2	AUGUSTUS	exon	12363882	12366392	.	-	.	transcript_id "Ledus.S2G164100.t1"; gene_id "Ledus.S2G164100"
Ledus.S2	AUGUSTUS	start_codon	12366390	12366392	.	-	0	transcript_id "Ledus.S2G164100.t1"; gene_id "Ledus.S2G164100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12960.t1 is derived from g6770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1087011	1087310	.	+	.	Ledus.S6G002200
Ledus.S6	AUGUSTUS	transcript	1087011	1087310	.	+	.	transcript_id "Ledus.S6G002200.t1"; gene_id "Ledus.S6G002200"
Ledus.S6	AUGUSTUS	start_codon	1087011	1087013	.	+	0	transcript_id "Ledus.S6G002200.t1"; gene_id "Ledus.S6G002200"
Ledus.S6	AUGUSTUS	CDS	1087011	1087310	1	+	0	transcript_id "Ledus.S6G002200.t1"; gene_id "Ledus.S6G002200"
Ledus.S6	AUGUSTUS	exon	1087011	1087310	.	+	.	transcript_id "Ledus.S6G002200.t1"; gene_id "Ledus.S6G002200"
Ledus.S6	AUGUSTUS	stop_codon	1087311	1087313	.	+	0	transcript_id "Ledus.S6G002200.t1"; gene_id "Ledus.S6G002200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8384.t1 is derived from g13056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11412902	11415196	.	-	.	Ledus.S5G116200
Ledus.S5	AUGUSTUS	transcript	11412902	11415196	.	-	.	transcript_id "Ledus.S5G116200.t1"; gene_id "Ledus.S5G116200"
Ledus.S5	AUGUSTUS	stop_codon	11412899	11412901	.	-	0	transcript_id "Ledus.S5G116200.t1"; gene_id "Ledus.S5G116200"
Ledus.S5	AUGUSTUS	CDS	11412902	11415196	0.97	-	0	transcript_id "Ledus.S5G116200.t1"; gene_id "Ledus.S5G116200"
Ledus.S5	AUGUSTUS	exon	11412902	11415196	.	-	.	transcript_id "Ledus.S5G116200.t1"; gene_id "Ledus.S5G116200"
Ledus.S5	AUGUSTUS	start_codon	11415194	11415196	.	-	0	transcript_id "Ledus.S5G116200.t1"; gene_id "Ledus.S5G116200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5358.t1 is derived from g2797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23645995	23648482	.	+	.	Ledus.S1G277900
Ledus.S1	AUGUSTUS	transcript	23645995	23648482	.	+	.	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	start_codon	23645995	23645997	.	+	0	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	CDS	23645995	23646021	1	+	0	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	exon	23645995	23646021	.	+	.	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	intron	23646022	23646365	.	+	.	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	CDS	23646366	23646505	0.28	+	0	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	exon	23646366	23646505	.	+	.	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	intron	23646506	23646594	.	+	.	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	CDS	23646595	23646905	0.2	+	1	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	exon	23646595	23646905	.	+	.	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	intron	23646906	23646985	.	+	.	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	CDS	23646986	23647491	0.18	+	2	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	exon	23646986	23647491	.	+	.	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	intron	23647492	23647669	.	+	.	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	CDS	23647670	23648209	0.93	+	0	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	exon	23647670	23648209	.	+	.	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	intron	23648210	23648338	.	+	.	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	CDS	23648339	23648482	0.86	+	0	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	exon	23648339	23648482	.	+	.	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
Ledus.S1	AUGUSTUS	stop_codon	23648483	23648485	.	+	0	transcript_id "Ledus.S1G277900.t1"; gene_id "Ledus.S1G277900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9308.t1 is derived from g10338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5956479	5956688	.	+	.	Ledus.S3G078500
Ledus.S3	AUGUSTUS	transcript	5956479	5956688	.	+	.	transcript_id "Ledus.S3G078500.t1"; gene_id "Ledus.S3G078500"
Ledus.S3	AUGUSTUS	start_codon	5956479	5956481	.	+	0	transcript_id "Ledus.S3G078500.t1"; gene_id "Ledus.S3G078500"
Ledus.S3	AUGUSTUS	CDS	5956479	5956688	0.95	+	0	transcript_id "Ledus.S3G078500.t1"; gene_id "Ledus.S3G078500"
Ledus.S3	AUGUSTUS	exon	5956479	5956688	.	+	.	transcript_id "Ledus.S3G078500.t1"; gene_id "Ledus.S3G078500"
Ledus.S3	AUGUSTUS	stop_codon	5956689	5956691	.	+	0	transcript_id "Ledus.S3G078500.t1"; gene_id "Ledus.S3G078500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2629.t1 is derived from g62.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	830662	831253	.	-	.	Ledus.S1G005000
Ledus.S1	AUGUSTUS	transcript	830662	831253	.	-	.	transcript_id "Ledus.S1G005000.t1"; gene_id "Ledus.S1G005000"
Ledus.S1	AUGUSTUS	stop_codon	830659	830661	.	-	0	transcript_id "Ledus.S1G005000.t1"; gene_id "Ledus.S1G005000"
Ledus.S1	AUGUSTUS	CDS	830662	830738	0.77	-	2	transcript_id "Ledus.S1G005000.t1"; gene_id "Ledus.S1G005000"
Ledus.S1	AUGUSTUS	exon	830662	830738	.	-	.	transcript_id "Ledus.S1G005000.t1"; gene_id "Ledus.S1G005000"
Ledus.S1	AUGUSTUS	intron	830739	830838	.	-	.	transcript_id "Ledus.S1G005000.t1"; gene_id "Ledus.S1G005000"
Ledus.S1	AUGUSTUS	CDS	830839	831253	0.4	-	0	transcript_id "Ledus.S1G005000.t1"; gene_id "Ledus.S1G005000"
Ledus.S1	AUGUSTUS	exon	830839	831253	.	-	.	transcript_id "Ledus.S1G005000.t1"; gene_id "Ledus.S1G005000"
Ledus.S1	AUGUSTUS	start_codon	831251	831253	.	-	0	transcript_id "Ledus.S1G005000.t1"; gene_id "Ledus.S1G005000"
# This transcript jg2981.t2 is derived from g416.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2981.t3 is derived from g416.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2981.t4 is derived from g416.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2982.t1 is derived from g417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5145216	5145798	.	-	.	Ledus.S1G040300
Ledus.S1	AUGUSTUS	transcript	5145216	5145798	.	-	.	transcript_id "Ledus.S1G040300.t1"; gene_id "Ledus.S1G040300"
Ledus.S1	AUGUSTUS	stop_codon	5145213	5145215	.	-	0	transcript_id "Ledus.S1G040300.t1"; gene_id "Ledus.S1G040300"
Ledus.S1	AUGUSTUS	CDS	5145216	5145456	0.37	-	1	transcript_id "Ledus.S1G040300.t1"; gene_id "Ledus.S1G040300"
Ledus.S1	AUGUSTUS	exon	5145216	5145456	.	-	.	transcript_id "Ledus.S1G040300.t1"; gene_id "Ledus.S1G040300"
Ledus.S1	AUGUSTUS	intron	5145457	5145706	.	-	.	transcript_id "Ledus.S1G040300.t1"; gene_id "Ledus.S1G040300"
Ledus.S1	AUGUSTUS	CDS	5145707	5145798	0.45	-	0	transcript_id "Ledus.S1G040300.t1"; gene_id "Ledus.S1G040300"
Ledus.S1	AUGUSTUS	exon	5145707	5145798	.	-	.	transcript_id "Ledus.S1G040300.t1"; gene_id "Ledus.S1G040300"
Ledus.S1	AUGUSTUS	start_codon	5145796	5145798	.	-	0	transcript_id "Ledus.S1G040300.t1"; gene_id "Ledus.S1G040300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg609.t1 is derived from g7470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3614401	3619218	.	+	.	Ledus.S2G049100
Ledus.S2	AUGUSTUS	transcript	3614401	3619218	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	start_codon	3614401	3614403	.	+	0	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3614401	3614790	0.36	+	0	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3614401	3614790	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	intron	3614791	3614960	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3614961	3615162	0.49	+	0	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3614961	3615162	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	intron	3615163	3615271	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3615272	3615643	0.43	+	2	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3615272	3615643	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	intron	3615644	3615828	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3615829	3616403	1	+	2	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3615829	3616403	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	intron	3616404	3616509	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3616510	3616578	0.9	+	0	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3616510	3616578	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	intron	3616579	3616694	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3616695	3616889	1	+	0	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3616695	3616889	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	intron	3616890	3617022	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3617023	3617154	1	+	0	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3617023	3617154	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	intron	3617155	3617313	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3617314	3617400	1	+	0	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3617314	3617400	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	intron	3617401	3617492	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3617493	3617930	0.96	+	0	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3617493	3617930	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	intron	3617931	3618115	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3618116	3618274	1	+	0	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3618116	3618274	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	intron	3618275	3618361	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3618362	3618604	1	+	0	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3618362	3618604	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	intron	3618605	3618684	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3618685	3618800	1	+	0	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3618685	3618800	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	intron	3618801	3618947	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	CDS	3618948	3619218	0.99	+	1	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	exon	3618948	3619218	.	+	.	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
Ledus.S2	AUGUSTUS	stop_codon	3619219	3619221	.	+	0	transcript_id "Ledus.S2G049100.t1"; gene_id "Ledus.S2G049100"
# This transcript jg10162.t2 is derived from g11192.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10163.t1 is derived from g11193.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13411705	13417863	.	+	.	Ledus.S3G164000
Ledus.S3	AUGUSTUS	transcript	13411705	13417863	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	start_codon	13411705	13411707	.	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13411705	13411778	0.85	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13411705	13411778	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13411779	13411870	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13411871	13412186	0.9	+	1	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13411871	13412186	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13412187	13412308	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13412309	13412387	1	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13412309	13412387	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13412388	13412486	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13412487	13412556	1	+	2	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13412487	13412556	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13412557	13412745	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13412746	13412861	1	+	1	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13412746	13412861	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13412862	13412956	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13412957	13412991	1	+	2	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13412957	13412991	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13412992	13413081	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13413082	13413207	1	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13413082	13413207	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13413208	13413304	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13413305	13413463	0.89	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13413305	13413463	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13413464	13413572	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13413573	13413665	0.81	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13413573	13413665	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13413666	13413778	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13413779	13413946	0.92	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13413779	13413946	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13413947	13414160	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13414161	13414262	1	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13414161	13414262	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13414263	13414423	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13414424	13414620	1	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13414424	13414620	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13414621	13414711	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13414712	13414769	1	+	1	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13414712	13414769	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13414770	13414861	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13414862	13414950	1	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13414862	13414950	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13414951	13415070	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13415071	13415202	1	+	1	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13415071	13415202	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13415203	13415326	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13415327	13415449	0.83	+	1	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13415327	13415449	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13415450	13415565	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13415566	13415664	0.87	+	1	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13415566	13415664	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13415665	13415804	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13415805	13415996	1	+	1	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13415805	13415996	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13415997	13416078	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13416079	13416253	1	+	1	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13416079	13416253	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13416254	13416423	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13416424	13416580	0.99	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13416424	13416580	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13416581	13416693	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13416694	13416902	0.94	+	2	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13416694	13416902	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13416903	13417023	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13417024	13417162	1	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13417024	13417162	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13417163	13417283	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13417284	13417444	1	+	2	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13417284	13417444	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13417445	13417541	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13417542	13417655	0.74	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13417542	13417655	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13417656	13417758	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13417759	13417863	0.87	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13417759	13417863	.	+	.	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	stop_codon	13417864	13417866	.	+	0	transcript_id "Ledus.S3G164000.t1"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	transcript	13411733	13417863	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	start_codon	13411733	13411735	.	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13411733	13411778	0.5	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13411733	13411778	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13411779	13411929	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13411930	13412186	0.76	+	2	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13411930	13412186	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13412187	13412308	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13412309	13412387	1	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13412309	13412387	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13412388	13412486	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13412487	13412556	1	+	2	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13412487	13412556	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13412557	13412745	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13412746	13412861	1	+	1	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13412746	13412861	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13412862	13412956	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13412957	13412991	1	+	2	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13412957	13412991	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13412992	13413081	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13413082	13413207	1	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13413082	13413207	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13413208	13413304	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13413305	13413463	0.83	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13413305	13413463	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13413464	13413572	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13413573	13413665	0.76	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13413573	13413665	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13413666	13413778	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13413779	13413946	0.92	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13413779	13413946	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13413947	13414160	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13414161	13414262	1	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13414161	13414262	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13414263	13414423	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13414424	13414620	1	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13414424	13414620	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13414621	13414711	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13414712	13414769	1	+	1	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13414712	13414769	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13414770	13414861	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13414862	13414950	1	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13414862	13414950	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13414951	13415070	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13415071	13415202	1	+	1	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13415071	13415202	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13415203	13415326	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13415327	13415449	0.9	+	1	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13415327	13415449	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13415450	13415565	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13415566	13415664	0.88	+	1	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13415566	13415664	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13415665	13415804	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13415805	13415996	1	+	1	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13415805	13415996	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13415997	13416078	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13416079	13416253	1	+	1	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13416079	13416253	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13416254	13416423	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13416424	13416580	0.96	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13416424	13416580	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13416581	13416693	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13416694	13416902	0.89	+	2	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13416694	13416902	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13416903	13417023	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13417024	13417162	1	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13417024	13417162	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13417163	13417283	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13417284	13417444	1	+	2	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13417284	13417444	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13417445	13417541	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13417542	13417655	0.75	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13417542	13417655	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	intron	13417656	13417758	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	CDS	13417759	13417863	0.84	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	exon	13417759	13417863	.	+	.	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
Ledus.S3	AUGUSTUS	stop_codon	13417864	13417866	.	+	0	transcript_id "Ledus.S3G164000.t2"; gene_id "Ledus.S3G164000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12715.t1 is derived from g6337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14045437	14047185	.	-	.	Ledus.S4G187100
Ledus.S4	AUGUSTUS	transcript	14045437	14047185	.	-	.	transcript_id "Ledus.S4G187100.t1"; gene_id "Ledus.S4G187100"
Ledus.S4	AUGUSTUS	stop_codon	14045434	14045436	.	-	0	transcript_id "Ledus.S4G187100.t1"; gene_id "Ledus.S4G187100"
Ledus.S4	AUGUSTUS	CDS	14045437	14045859	1	-	0	transcript_id "Ledus.S4G187100.t1"; gene_id "Ledus.S4G187100"
Ledus.S4	AUGUSTUS	exon	14045437	14045859	.	-	.	transcript_id "Ledus.S4G187100.t1"; gene_id "Ledus.S4G187100"
Ledus.S4	AUGUSTUS	intron	14045860	14046708	.	-	.	transcript_id "Ledus.S4G187100.t1"; gene_id "Ledus.S4G187100"
Ledus.S4	AUGUSTUS	CDS	14046709	14047185	0.96	-	0	transcript_id "Ledus.S4G187100.t1"; gene_id "Ledus.S4G187100"
Ledus.S4	AUGUSTUS	exon	14046709	14047185	.	-	.	transcript_id "Ledus.S4G187100.t1"; gene_id "Ledus.S4G187100"
Ledus.S4	AUGUSTUS	start_codon	14047183	14047185	.	-	0	transcript_id "Ledus.S4G187100.t1"; gene_id "Ledus.S4G187100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg13153.t1 is derived from g6963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7488185	7490712	.	-	.	Ledus.S6G021500
Ledus.S6	AUGUSTUS	transcript	7488185	7490712	.	-	.	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	stop_codon	7488182	7488184	.	-	0	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	CDS	7488185	7488791	0.5	-	1	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	exon	7488185	7488791	.	-	.	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	intron	7488792	7488885	.	-	.	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	CDS	7488886	7489060	0.99	-	2	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	exon	7488886	7489060	.	-	.	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	intron	7489061	7489164	.	-	.	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	CDS	7489165	7489351	0.52	-	0	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	exon	7489165	7489351	.	-	.	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	intron	7489352	7489457	.	-	.	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	CDS	7489458	7490435	0.55	-	0	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	exon	7489458	7490435	.	-	.	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	intron	7490436	7490535	.	-	.	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	CDS	7490536	7490712	0.87	-	0	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	exon	7490536	7490712	.	-	.	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	start_codon	7490710	7490712	.	-	0	transcript_id "Ledus.S6G021500.t1"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	transcript	7488185	7489685	.	-	.	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	stop_codon	7488182	7488184	.	-	0	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	CDS	7488185	7488791	0.54	-	1	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	exon	7488185	7488791	.	-	.	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	intron	7488792	7488885	.	-	.	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	CDS	7488886	7489060	0.96	-	2	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	exon	7488886	7489060	.	-	.	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	intron	7489061	7489164	.	-	.	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	CDS	7489165	7489351	0.45	-	0	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	exon	7489165	7489351	.	-	.	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	intron	7489352	7489457	.	-	.	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	CDS	7489458	7489685	0.26	-	0	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	exon	7489458	7489685	.	-	.	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
Ledus.S6	AUGUSTUS	start_codon	7489683	7489685	.	-	0	transcript_id "Ledus.S6G021500.t2"; gene_id "Ledus.S6G021500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12674.t1 is derived from g6296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13822989	13824388	.	+	.	Ledus.S4G183000
Ledus.S4	AUGUSTUS	transcript	13822989	13824388	.	+	.	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	start_codon	13822989	13822991	.	+	0	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	CDS	13822989	13823035	0.92	+	0	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	exon	13822989	13823035	.	+	.	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	intron	13823036	13823148	.	+	.	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	CDS	13823149	13823255	0.92	+	1	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	exon	13823149	13823255	.	+	.	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	intron	13823256	13823359	.	+	.	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	CDS	13823360	13823670	0.92	+	2	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	exon	13823360	13823670	.	+	.	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	intron	13823671	13823800	.	+	.	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	CDS	13823801	13824388	0.66	+	0	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	exon	13823801	13824388	.	+	.	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
Ledus.S4	AUGUSTUS	stop_codon	13824389	13824391	.	+	0	transcript_id "Ledus.S4G183000.t1"; gene_id "Ledus.S4G183000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3259.t1 is derived from g694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7152195	7152761	.	-	.	Ledus.S1G068000
Ledus.S1	AUGUSTUS	transcript	7152195	7152761	.	-	.	transcript_id "Ledus.S1G068000.t1"; gene_id "Ledus.S1G068000"
Ledus.S1	AUGUSTUS	stop_codon	7152192	7152194	.	-	0	transcript_id "Ledus.S1G068000.t1"; gene_id "Ledus.S1G068000"
Ledus.S1	AUGUSTUS	CDS	7152195	7152425	0.88	-	0	transcript_id "Ledus.S1G068000.t1"; gene_id "Ledus.S1G068000"
Ledus.S1	AUGUSTUS	exon	7152195	7152425	.	-	.	transcript_id "Ledus.S1G068000.t1"; gene_id "Ledus.S1G068000"
Ledus.S1	AUGUSTUS	intron	7152426	7152548	.	-	.	transcript_id "Ledus.S1G068000.t1"; gene_id "Ledus.S1G068000"
Ledus.S1	AUGUSTUS	CDS	7152549	7152761	0.7	-	0	transcript_id "Ledus.S1G068000.t1"; gene_id "Ledus.S1G068000"
Ledus.S1	AUGUSTUS	exon	7152549	7152761	.	-	.	transcript_id "Ledus.S1G068000.t1"; gene_id "Ledus.S1G068000"
Ledus.S1	AUGUSTUS	start_codon	7152759	7152761	.	-	0	transcript_id "Ledus.S1G068000.t1"; gene_id "Ledus.S1G068000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg21.t1 is derived from g9452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C31	AUGUSTUS	gene	12237	12533	.	-	.	Ledus.C31G000200
Ledus.C31	AUGUSTUS	transcript	12237	12533	.	-	.	transcript_id "Ledus.C31G000200.t1"; gene_id "Ledus.C31G000200"
Ledus.C31	AUGUSTUS	stop_codon	12234	12236	.	-	0	transcript_id "Ledus.C31G000200.t1"; gene_id "Ledus.C31G000200"
Ledus.C31	AUGUSTUS	CDS	12237	12533	0.65	-	0	transcript_id "Ledus.C31G000200.t1"; gene_id "Ledus.C31G000200"
Ledus.C31	AUGUSTUS	exon	12237	12533	.	-	.	transcript_id "Ledus.C31G000200.t1"; gene_id "Ledus.C31G000200"
Ledus.C31	AUGUSTUS	start_codon	12531	12533	.	-	0	transcript_id "Ledus.C31G000200.t1"; gene_id "Ledus.C31G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10900.t1 is derived from g4518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	377929	381069	.	-	.	Ledus.S4G005600
Ledus.S4	AUGUSTUS	transcript	377929	381069	.	-	.	transcript_id "Ledus.S4G005600.t1"; gene_id "Ledus.S4G005600"
Ledus.S4	AUGUSTUS	stop_codon	377926	377928	.	-	0	transcript_id "Ledus.S4G005600.t1"; gene_id "Ledus.S4G005600"
Ledus.S4	AUGUSTUS	CDS	377929	381069	0.98	-	0	transcript_id "Ledus.S4G005600.t1"; gene_id "Ledus.S4G005600"
Ledus.S4	AUGUSTUS	exon	377929	381069	.	-	.	transcript_id "Ledus.S4G005600.t1"; gene_id "Ledus.S4G005600"
Ledus.S4	AUGUSTUS	start_codon	381067	381069	.	-	0	transcript_id "Ledus.S4G005600.t1"; gene_id "Ledus.S4G005600"
# This transcript jg11095.t2 is derived from g4713.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11096.t1 is derived from g4714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1747506	1750766	.	-	.	Ledus.S4G025200
Ledus.S4	AUGUSTUS	transcript	1747506	1750766	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	stop_codon	1747503	1747505	.	-	0	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	CDS	1747506	1747626	0.88	-	1	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	exon	1747506	1747626	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	intron	1747627	1747739	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	CDS	1747740	1747885	0.96	-	0	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	exon	1747740	1747885	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	intron	1747886	1747973	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	CDS	1747974	1748108	1	-	0	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	exon	1747974	1748108	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	intron	1748109	1748219	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	CDS	1748220	1748303	1	-	0	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	exon	1748220	1748303	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	intron	1748304	1748394	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	CDS	1748395	1748469	1	-	0	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	exon	1748395	1748469	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	intron	1748470	1748574	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	CDS	1748575	1748608	1	-	1	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	exon	1748575	1748608	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	intron	1748609	1748748	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	CDS	1748749	1748849	0.83	-	0	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	exon	1748749	1748849	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	intron	1748850	1748957	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	CDS	1748958	1749044	1	-	0	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	exon	1748958	1749044	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	intron	1749045	1749258	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	CDS	1749259	1749351	1	-	0	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	exon	1749259	1749351	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	intron	1749352	1749565	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	CDS	1749566	1749646	1	-	0	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	exon	1749566	1749646	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	intron	1749647	1749742	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	CDS	1749743	1749956	1	-	1	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	exon	1749743	1749956	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	intron	1749957	1750035	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	CDS	1750036	1750766	0.92	-	0	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	exon	1750036	1750766	.	-	.	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
Ledus.S4	AUGUSTUS	start_codon	1750764	1750766	.	-	0	transcript_id "Ledus.S4G025200.t1"; gene_id "Ledus.S4G025200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5465.t1 is derived from g2904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24416599	24416910	.	+	.	Ledus.S1G288600
Ledus.S1	AUGUSTUS	transcript	24416599	24416910	.	+	.	transcript_id "Ledus.S1G288600.t1"; gene_id "Ledus.S1G288600"
Ledus.S1	AUGUSTUS	start_codon	24416599	24416601	.	+	0	transcript_id "Ledus.S1G288600.t1"; gene_id "Ledus.S1G288600"
Ledus.S1	AUGUSTUS	CDS	24416599	24416910	0.88	+	0	transcript_id "Ledus.S1G288600.t1"; gene_id "Ledus.S1G288600"
Ledus.S1	AUGUSTUS	exon	24416599	24416910	.	+	.	transcript_id "Ledus.S1G288600.t1"; gene_id "Ledus.S1G288600"
Ledus.S1	AUGUSTUS	stop_codon	24416911	24416913	.	+	0	transcript_id "Ledus.S1G288600.t1"; gene_id "Ledus.S1G288600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6085.t1 is derived from g3528.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28858269	28859889	.	+	.	Ledus.S1G350600
Ledus.S1	AUGUSTUS	transcript	28858269	28859889	.	+	.	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	start_codon	28858269	28858271	.	+	0	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	CDS	28858269	28858485	0.2	+	0	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	exon	28858269	28858485	.	+	.	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	intron	28858486	28858640	.	+	.	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	CDS	28858641	28858769	0.67	+	2	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	exon	28858641	28858769	.	+	.	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	intron	28858770	28858863	.	+	.	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	CDS	28858864	28859282	0.98	+	2	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	exon	28858864	28859282	.	+	.	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	intron	28859283	28859394	.	+	.	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	CDS	28859395	28859889	0.98	+	0	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	exon	28859395	28859889	.	+	.	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
Ledus.S1	AUGUSTUS	stop_codon	28859890	28859892	.	+	0	transcript_id "Ledus.S1G350600.t1"; gene_id "Ledus.S1G350600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11526.t1 is derived from g5144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5127075	5128927	.	-	.	Ledus.S4G068200
Ledus.S4	AUGUSTUS	transcript	5127075	5128927	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	stop_codon	5127072	5127074	.	-	0	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	CDS	5127075	5127212	1	-	0	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	exon	5127075	5127212	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	intron	5127213	5127296	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	CDS	5127297	5127450	1	-	1	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	exon	5127297	5127450	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	intron	5127451	5127529	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	CDS	5127530	5127834	1	-	0	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	exon	5127530	5127834	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	intron	5127835	5127980	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	CDS	5127981	5128118	1	-	0	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	exon	5127981	5128118	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	intron	5128119	5128202	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	CDS	5128203	5128304	1	-	0	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	exon	5128203	5128304	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	intron	5128305	5128402	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	CDS	5128403	5128615	1	-	0	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	exon	5128403	5128615	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	intron	5128616	5128711	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	CDS	5128712	5128927	0.99	-	0	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	exon	5128712	5128927	.	-	.	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
Ledus.S4	AUGUSTUS	start_codon	5128925	5128927	.	-	0	transcript_id "Ledus.S4G068200.t1"; gene_id "Ledus.S4G068200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg212.t1 is derived from g7073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	929869	933918	.	+	.	Ledus.S2G009400
Ledus.S2	AUGUSTUS	transcript	929869	933918	.	+	.	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	start_codon	929869	929871	.	+	0	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	CDS	929869	932250	0.89	+	0	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	exon	929869	932250	.	+	.	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	intron	932251	932348	.	+	.	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	CDS	932349	932543	1	+	0	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	exon	932349	932543	.	+	.	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	intron	932544	932748	.	+	.	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	CDS	932749	933053	1	+	0	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	exon	932749	933053	.	+	.	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	intron	933054	933166	.	+	.	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	CDS	933167	933349	1	+	1	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	exon	933167	933349	.	+	.	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	intron	933350	933447	.	+	.	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	CDS	933448	933628	1	+	1	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	exon	933448	933628	.	+	.	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	intron	933629	933750	.	+	.	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	CDS	933751	933918	0.96	+	0	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	exon	933751	933918	.	+	.	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
Ledus.S2	AUGUSTUS	stop_codon	933919	933921	.	+	0	transcript_id "Ledus.S2G009400.t1"; gene_id "Ledus.S2G009400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4852.t1 is derived from g2290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20206035	20206367	.	+	.	Ledus.S1G227300
Ledus.S1	AUGUSTUS	transcript	20206035	20206367	.	+	.	transcript_id "Ledus.S1G227300.t1"; gene_id "Ledus.S1G227300"
Ledus.S1	AUGUSTUS	start_codon	20206035	20206037	.	+	0	transcript_id "Ledus.S1G227300.t1"; gene_id "Ledus.S1G227300"
Ledus.S1	AUGUSTUS	CDS	20206035	20206367	0.94	+	0	transcript_id "Ledus.S1G227300.t1"; gene_id "Ledus.S1G227300"
Ledus.S1	AUGUSTUS	exon	20206035	20206367	.	+	.	transcript_id "Ledus.S1G227300.t1"; gene_id "Ledus.S1G227300"
Ledus.S1	AUGUSTUS	stop_codon	20206368	20206370	.	+	0	transcript_id "Ledus.S1G227300.t1"; gene_id "Ledus.S1G227300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6521.t1 is derived from g3964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31857390	31863269	.	-	.	Ledus.S1G394200
Ledus.S1	AUGUSTUS	transcript	31857390	31863269	.	-	.	transcript_id "Ledus.S1G394200.t1"; gene_id "Ledus.S1G394200"
Ledus.S1	AUGUSTUS	stop_codon	31857387	31857389	.	-	0	transcript_id "Ledus.S1G394200.t1"; gene_id "Ledus.S1G394200"
Ledus.S1	AUGUSTUS	CDS	31857390	31857701	0.05	-	0	transcript_id "Ledus.S1G394200.t1"; gene_id "Ledus.S1G394200"
Ledus.S1	AUGUSTUS	exon	31857390	31857701	.	-	.	transcript_id "Ledus.S1G394200.t1"; gene_id "Ledus.S1G394200"
Ledus.S1	AUGUSTUS	intron	31857702	31858681	.	-	.	transcript_id "Ledus.S1G394200.t1"; gene_id "Ledus.S1G394200"
Ledus.S1	AUGUSTUS	CDS	31858682	31858793	0.07	-	1	transcript_id "Ledus.S1G394200.t1"; gene_id "Ledus.S1G394200"
Ledus.S1	AUGUSTUS	exon	31858682	31858793	.	-	.	transcript_id "Ledus.S1G394200.t1"; gene_id "Ledus.S1G394200"
Ledus.S1	AUGUSTUS	intron	31858794	31863261	.	-	.	transcript_id "Ledus.S1G394200.t1"; gene_id "Ledus.S1G394200"
Ledus.S1	AUGUSTUS	CDS	31863262	31863269	0.01	-	0	transcript_id "Ledus.S1G394200.t1"; gene_id "Ledus.S1G394200"
Ledus.S1	AUGUSTUS	exon	31863262	31863269	.	-	.	transcript_id "Ledus.S1G394200.t1"; gene_id "Ledus.S1G394200"
Ledus.S1	AUGUSTUS	start_codon	31863267	31863269	.	-	0	transcript_id "Ledus.S1G394200.t1"; gene_id "Ledus.S1G394200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5387.t1 is derived from g2826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23966690	23968956	.	+	.	Ledus.S1G280800
Ledus.S1	AUGUSTUS	transcript	23966690	23968956	.	+	.	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	start_codon	23966690	23966692	.	+	0	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	CDS	23966690	23966798	0.9	+	0	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	exon	23966690	23966798	.	+	.	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	intron	23966799	23966897	.	+	.	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	CDS	23966898	23966985	1	+	2	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	exon	23966898	23966985	.	+	.	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	intron	23966986	23967052	.	+	.	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	CDS	23967053	23968835	0.99	+	1	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	exon	23967053	23968835	.	+	.	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	intron	23968836	23968923	.	+	.	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	CDS	23968924	23968956	0.98	+	0	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	exon	23968924	23968956	.	+	.	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
Ledus.S1	AUGUSTUS	stop_codon	23968957	23968959	.	+	0	transcript_id "Ledus.S1G280800.t1"; gene_id "Ledus.S1G280800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11947.t1 is derived from g5566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7937901	7939132	.	-	.	Ledus.S4G110300
Ledus.S4	AUGUSTUS	transcript	7937901	7939132	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	stop_codon	7937898	7937900	.	-	0	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	CDS	7937901	7937993	1	-	0	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	exon	7937901	7937993	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	intron	7937994	7938100	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	CDS	7938101	7938217	0.96	-	0	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	exon	7938101	7938217	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	intron	7938218	7938309	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	CDS	7938310	7938473	1	-	2	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	exon	7938310	7938473	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	intron	7938474	7938548	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	CDS	7938549	7938626	1	-	2	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	exon	7938549	7938626	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	intron	7938627	7938721	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	CDS	7938722	7938781	1	-	2	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	exon	7938722	7938781	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	intron	7938782	7938873	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	CDS	7938874	7938965	1	-	1	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	exon	7938874	7938965	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	intron	7938966	7939061	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	CDS	7939062	7939132	1	-	0	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	exon	7939062	7939132	.	-	.	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
Ledus.S4	AUGUSTUS	start_codon	7939130	7939132	.	-	0	transcript_id "Ledus.S4G110300.t1"; gene_id "Ledus.S4G110300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5124.t1 is derived from g2563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21860678	21863166	.	-	.	Ledus.S1G254500
Ledus.S1	AUGUSTUS	transcript	21860678	21863166	.	-	.	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	stop_codon	21860675	21860677	.	-	0	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	CDS	21860678	21862669	0.91	-	0	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	exon	21860678	21862669	.	-	.	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	intron	21862670	21862757	.	-	.	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	CDS	21862758	21862843	1	-	2	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	exon	21862758	21862843	.	-	.	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	intron	21862844	21862926	.	-	.	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	CDS	21862927	21862987	0.8	-	0	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	exon	21862927	21862987	.	-	.	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	intron	21862988	21863142	.	-	.	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	CDS	21863143	21863166	0.65	-	0	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	exon	21863143	21863166	.	-	.	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
Ledus.S1	AUGUSTUS	start_codon	21863164	21863166	.	-	0	transcript_id "Ledus.S1G254500.t1"; gene_id "Ledus.S1G254500"
# This transcript jg1886.t2 is derived from g8749.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1887.t1 is derived from g8750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13189731	13191377	.	-	.	Ledus.S2G176900
Ledus.S2	AUGUSTUS	transcript	13189731	13191377	.	-	.	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	stop_codon	13189728	13189730	.	-	0	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	CDS	13189731	13189925	0.97	-	0	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	exon	13189731	13189925	.	-	.	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	intron	13189926	13190041	.	-	.	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	CDS	13190042	13190267	0.97	-	1	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	exon	13190042	13190267	.	-	.	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	intron	13190268	13190382	.	-	.	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	CDS	13190383	13190528	0.97	-	0	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	exon	13190383	13190528	.	-	.	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	intron	13190529	13190601	.	-	.	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	CDS	13190602	13190697	1	-	0	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	exon	13190602	13190697	.	-	.	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	intron	13190698	13190789	.	-	.	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	CDS	13190790	13191002	1	-	0	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	exon	13190790	13191002	.	-	.	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	intron	13191003	13191257	.	-	.	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	CDS	13191258	13191377	0.58	-	0	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	exon	13191258	13191377	.	-	.	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
Ledus.S2	AUGUSTUS	start_codon	13191375	13191377	.	-	0	transcript_id "Ledus.S2G176900.t1"; gene_id "Ledus.S2G176900"
# This transcript jg11588.t2 is derived from g5206.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11588.t3 is derived from g5206.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11588.t4 is derived from g5206.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11589.t1 is derived from g5207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5420925	5423921	.	-	.	Ledus.S4G074500
Ledus.S4	AUGUSTUS	transcript	5420925	5423921	.	-	.	transcript_id "Ledus.S4G074500.t1"; gene_id "Ledus.S4G074500"
Ledus.S4	AUGUSTUS	stop_codon	5420922	5420924	.	-	0	transcript_id "Ledus.S4G074500.t1"; gene_id "Ledus.S4G074500"
Ledus.S4	AUGUSTUS	CDS	5420925	5423330	0.76	-	0	transcript_id "Ledus.S4G074500.t1"; gene_id "Ledus.S4G074500"
Ledus.S4	AUGUSTUS	exon	5420925	5423330	.	-	.	transcript_id "Ledus.S4G074500.t1"; gene_id "Ledus.S4G074500"
Ledus.S4	AUGUSTUS	intron	5423331	5423413	.	-	.	transcript_id "Ledus.S4G074500.t1"; gene_id "Ledus.S4G074500"
Ledus.S4	AUGUSTUS	CDS	5423414	5423508	1	-	2	transcript_id "Ledus.S4G074500.t1"; gene_id "Ledus.S4G074500"
Ledus.S4	AUGUSTUS	exon	5423414	5423508	.	-	.	transcript_id "Ledus.S4G074500.t1"; gene_id "Ledus.S4G074500"
Ledus.S4	AUGUSTUS	intron	5423509	5423602	.	-	.	transcript_id "Ledus.S4G074500.t1"; gene_id "Ledus.S4G074500"
Ledus.S4	AUGUSTUS	CDS	5423603	5423921	0.94	-	0	transcript_id "Ledus.S4G074500.t1"; gene_id "Ledus.S4G074500"
Ledus.S4	AUGUSTUS	exon	5423603	5423921	.	-	.	transcript_id "Ledus.S4G074500.t1"; gene_id "Ledus.S4G074500"
Ledus.S4	AUGUSTUS	start_codon	5423919	5423921	.	-	0	transcript_id "Ledus.S4G074500.t1"; gene_id "Ledus.S4G074500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7770.t1 is derived from g12441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6422358	6424632	.	-	.	Ledus.S5G054800
Ledus.S5	AUGUSTUS	transcript	6422358	6424632	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	stop_codon	6422355	6422357	.	-	0	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	CDS	6422358	6422594	1	-	0	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	exon	6422358	6422594	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	intron	6422595	6422684	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	CDS	6422685	6422777	1	-	0	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	exon	6422685	6422777	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	intron	6422778	6422855	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	CDS	6422856	6422969	1	-	0	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	exon	6422856	6422969	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	intron	6422970	6423049	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	CDS	6423050	6423181	1	-	0	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	exon	6423050	6423181	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	intron	6423182	6423277	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	CDS	6423278	6423369	1	-	2	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	exon	6423278	6423369	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	intron	6423370	6423470	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	CDS	6423471	6423540	0.98	-	0	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	exon	6423471	6423540	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	intron	6423541	6423628	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	CDS	6423629	6423745	1	-	0	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	exon	6423629	6423745	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	intron	6423746	6423832	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	CDS	6423833	6423973	1	-	0	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	exon	6423833	6423973	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	intron	6423974	6424062	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	CDS	6424063	6424131	1	-	0	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	exon	6424063	6424131	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	intron	6424132	6424229	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	CDS	6424230	6424307	1	-	0	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	exon	6424230	6424307	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	intron	6424308	6424380	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	CDS	6424381	6424632	1	-	0	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	exon	6424381	6424632	.	-	.	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
Ledus.S5	AUGUSTUS	start_codon	6424630	6424632	.	-	0	transcript_id "Ledus.S5G054800.t1"; gene_id "Ledus.S5G054800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10796.t1 is derived from g11828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17785634	17790038	.	+	.	Ledus.S3G227300
Ledus.S3	AUGUSTUS	transcript	17785634	17790038	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	start_codon	17785634	17785636	.	+	0	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17785634	17785715	0.99	+	0	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17785634	17785715	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17785716	17785783	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17785784	17786177	1	+	2	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17785784	17786177	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17786178	17786635	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17786636	17786672	1	+	1	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17786636	17786672	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17786673	17786762	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17786763	17786993	1	+	0	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17786763	17786993	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17786994	17787064	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17787065	17787158	1	+	0	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17787065	17787158	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17787159	17787243	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17787244	17787321	1	+	2	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17787244	17787321	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17787322	17787410	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17787411	17787542	1	+	2	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17787411	17787542	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17787543	17787619	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17787620	17787753	1	+	2	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17787620	17787753	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17787754	17787839	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17787840	17787884	1	+	0	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17787840	17787884	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17787885	17788008	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17788009	17788326	1	+	0	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17788009	17788326	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17788327	17788421	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17788422	17788485	1	+	0	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17788422	17788485	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17788486	17788561	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17788562	17788674	1	+	2	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17788562	17788674	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17788675	17788836	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17788837	17789439	0.99	+	0	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17788837	17789439	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17789440	17789517	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17789518	17789628	1	+	0	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17789518	17789628	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	intron	17789629	17789717	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	CDS	17789718	17790038	1	+	0	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	exon	17789718	17790038	.	+	.	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
Ledus.S3	AUGUSTUS	stop_codon	17790039	17790041	.	+	0	transcript_id "Ledus.S3G227300.t1"; gene_id "Ledus.S3G227300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7835.t1 is derived from g12506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7376417	7378732	.	-	.	Ledus.S5G061300
Ledus.S5	AUGUSTUS	transcript	7376417	7378732	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	stop_codon	7376414	7376416	.	-	0	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	CDS	7376417	7376584	0.99	-	0	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	exon	7376417	7376584	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	intron	7376585	7376672	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	CDS	7376673	7376774	1	-	0	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	exon	7376673	7376774	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	intron	7376775	7376964	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	CDS	7376965	7377072	1	-	0	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	exon	7376965	7377072	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	intron	7377073	7377169	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	CDS	7377170	7377273	1	-	2	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	exon	7377170	7377273	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	intron	7377274	7377845	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	CDS	7377846	7378113	0.44	-	0	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	exon	7377846	7378113	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	intron	7378114	7378399	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	CDS	7378400	7378476	0.57	-	2	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	exon	7378400	7378476	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	intron	7378477	7378620	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	CDS	7378621	7378732	0.47	-	0	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	exon	7378621	7378732	.	-	.	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
Ledus.S5	AUGUSTUS	start_codon	7378730	7378732	.	-	0	transcript_id "Ledus.S5G061300.t1"; gene_id "Ledus.S5G061300"
# This transcript jg10170.t2 is derived from g11200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10171.t1 is derived from g11201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13440551	13442128	.	+	.	Ledus.S3G164800
Ledus.S3	AUGUSTUS	transcript	13440551	13442128	.	+	.	transcript_id "Ledus.S3G164800.t1"; gene_id "Ledus.S3G164800"
Ledus.S3	AUGUSTUS	start_codon	13440551	13440553	.	+	0	transcript_id "Ledus.S3G164800.t1"; gene_id "Ledus.S3G164800"
Ledus.S3	AUGUSTUS	CDS	13440551	13441311	0.87	+	0	transcript_id "Ledus.S3G164800.t1"; gene_id "Ledus.S3G164800"
Ledus.S3	AUGUSTUS	exon	13440551	13441311	.	+	.	transcript_id "Ledus.S3G164800.t1"; gene_id "Ledus.S3G164800"
Ledus.S3	AUGUSTUS	intron	13441312	13441482	.	+	.	transcript_id "Ledus.S3G164800.t1"; gene_id "Ledus.S3G164800"
Ledus.S3	AUGUSTUS	CDS	13441483	13442128	1	+	1	transcript_id "Ledus.S3G164800.t1"; gene_id "Ledus.S3G164800"
Ledus.S3	AUGUSTUS	exon	13441483	13442128	.	+	.	transcript_id "Ledus.S3G164800.t1"; gene_id "Ledus.S3G164800"
Ledus.S3	AUGUSTUS	stop_codon	13442129	13442131	.	+	0	transcript_id "Ledus.S3G164800.t1"; gene_id "Ledus.S3G164800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1506.t1 is derived from g8367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10615624	10616870	.	-	.	Ledus.S2G138800
Ledus.S2	AUGUSTUS	transcript	10615624	10616870	.	-	.	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	stop_codon	10615621	10615623	.	-	0	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	CDS	10615624	10615875	0.97	-	0	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	exon	10615624	10615875	.	-	.	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	intron	10615876	10615970	.	-	.	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	CDS	10615971	10616203	1	-	2	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	exon	10615971	10616203	.	-	.	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	intron	10616204	10616296	.	-	.	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	CDS	10616297	10616429	0.89	-	0	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	exon	10616297	10616429	.	-	.	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	intron	10616430	10616506	.	-	.	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	CDS	10616507	10616578	0.63	-	0	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	exon	10616507	10616578	.	-	.	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	intron	10616579	10616711	.	-	.	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	CDS	10616712	10616870	0.19	-	0	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	exon	10616712	10616870	.	-	.	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
Ledus.S2	AUGUSTUS	start_codon	10616868	10616870	.	-	0	transcript_id "Ledus.S2G138800.t1"; gene_id "Ledus.S2G138800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8633.t1 is derived from g9663.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	932486	933724	.	+	.	Ledus.S3G011000
Ledus.S3	AUGUSTUS	transcript	932486	933724	.	+	.	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	start_codon	932486	932488	.	+	0	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	CDS	932486	932969	0.64	+	0	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	exon	932486	932969	.	+	.	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	intron	932970	933127	.	+	.	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	CDS	933128	933216	0.74	+	2	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	exon	933128	933216	.	+	.	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	intron	933217	933497	.	+	.	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	CDS	933498	933567	0.83	+	0	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	exon	933498	933567	.	+	.	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	intron	933568	933653	.	+	.	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	CDS	933654	933724	0.7	+	2	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	exon	933654	933724	.	+	.	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
Ledus.S3	AUGUSTUS	stop_codon	933725	933727	.	+	0	transcript_id "Ledus.S3G011000.t1"; gene_id "Ledus.S3G011000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10624.t1 is derived from g11654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16560071	16562250	.	+	.	Ledus.S3G210100
Ledus.S3	AUGUSTUS	transcript	16560071	16562250	.	+	.	transcript_id "Ledus.S3G210100.t1"; gene_id "Ledus.S3G210100"
Ledus.S3	AUGUSTUS	start_codon	16560071	16560073	.	+	0	transcript_id "Ledus.S3G210100.t1"; gene_id "Ledus.S3G210100"
Ledus.S3	AUGUSTUS	CDS	16560071	16560955	0.42	+	0	transcript_id "Ledus.S3G210100.t1"; gene_id "Ledus.S3G210100"
Ledus.S3	AUGUSTUS	exon	16560071	16560955	.	+	.	transcript_id "Ledus.S3G210100.t1"; gene_id "Ledus.S3G210100"
Ledus.S3	AUGUSTUS	intron	16560956	16561042	.	+	.	transcript_id "Ledus.S3G210100.t1"; gene_id "Ledus.S3G210100"
Ledus.S3	AUGUSTUS	CDS	16561043	16561127	0.98	+	0	transcript_id "Ledus.S3G210100.t1"; gene_id "Ledus.S3G210100"
Ledus.S3	AUGUSTUS	exon	16561043	16561127	.	+	.	transcript_id "Ledus.S3G210100.t1"; gene_id "Ledus.S3G210100"
Ledus.S3	AUGUSTUS	intron	16561128	16561216	.	+	.	transcript_id "Ledus.S3G210100.t1"; gene_id "Ledus.S3G210100"
Ledus.S3	AUGUSTUS	CDS	16561217	16562250	0.98	+	2	transcript_id "Ledus.S3G210100.t1"; gene_id "Ledus.S3G210100"
Ledus.S3	AUGUSTUS	exon	16561217	16562250	.	+	.	transcript_id "Ledus.S3G210100.t1"; gene_id "Ledus.S3G210100"
Ledus.S3	AUGUSTUS	stop_codon	16562251	16562253	.	+	0	transcript_id "Ledus.S3G210100.t1"; gene_id "Ledus.S3G210100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6246.t1 is derived from g3689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29877665	29878166	.	+	.	Ledus.S1G366700
Ledus.S1	AUGUSTUS	transcript	29877665	29878166	.	+	.	transcript_id "Ledus.S1G366700.t1"; gene_id "Ledus.S1G366700"
Ledus.S1	AUGUSTUS	start_codon	29877665	29877667	.	+	0	transcript_id "Ledus.S1G366700.t1"; gene_id "Ledus.S1G366700"
Ledus.S1	AUGUSTUS	CDS	29877665	29877735	0.33	+	0	transcript_id "Ledus.S1G366700.t1"; gene_id "Ledus.S1G366700"
Ledus.S1	AUGUSTUS	exon	29877665	29877735	.	+	.	transcript_id "Ledus.S1G366700.t1"; gene_id "Ledus.S1G366700"
Ledus.S1	AUGUSTUS	intron	29877736	29877941	.	+	.	transcript_id "Ledus.S1G366700.t1"; gene_id "Ledus.S1G366700"
Ledus.S1	AUGUSTUS	CDS	29877942	29878006	0.83	+	1	transcript_id "Ledus.S1G366700.t1"; gene_id "Ledus.S1G366700"
Ledus.S1	AUGUSTUS	exon	29877942	29878006	.	+	.	transcript_id "Ledus.S1G366700.t1"; gene_id "Ledus.S1G366700"
Ledus.S1	AUGUSTUS	intron	29878007	29878080	.	+	.	transcript_id "Ledus.S1G366700.t1"; gene_id "Ledus.S1G366700"
Ledus.S1	AUGUSTUS	CDS	29878081	29878166	0.81	+	2	transcript_id "Ledus.S1G366700.t1"; gene_id "Ledus.S1G366700"
Ledus.S1	AUGUSTUS	exon	29878081	29878166	.	+	.	transcript_id "Ledus.S1G366700.t1"; gene_id "Ledus.S1G366700"
Ledus.S1	AUGUSTUS	stop_codon	29878167	29878169	.	+	0	transcript_id "Ledus.S1G366700.t1"; gene_id "Ledus.S1G366700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2946.t1 is derived from g381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4789926	4792481	.	-	.	Ledus.S1G036700
Ledus.S1	AUGUSTUS	transcript	4789926	4792481	.	-	.	transcript_id "Ledus.S1G036700.t1"; gene_id "Ledus.S1G036700"
Ledus.S1	AUGUSTUS	stop_codon	4789923	4789925	.	-	0	transcript_id "Ledus.S1G036700.t1"; gene_id "Ledus.S1G036700"
Ledus.S1	AUGUSTUS	CDS	4789926	4792481	0.6	-	0	transcript_id "Ledus.S1G036700.t1"; gene_id "Ledus.S1G036700"
Ledus.S1	AUGUSTUS	exon	4789926	4792481	.	-	.	transcript_id "Ledus.S1G036700.t1"; gene_id "Ledus.S1G036700"
Ledus.S1	AUGUSTUS	start_codon	4792479	4792481	.	-	0	transcript_id "Ledus.S1G036700.t1"; gene_id "Ledus.S1G036700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12952.t1 is derived from g6762.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	746310	747293	.	+	.	Ledus.S6G001400
Ledus.S6	AUGUSTUS	transcript	746310	747293	.	+	.	transcript_id "Ledus.S6G001400.t1"; gene_id "Ledus.S6G001400"
Ledus.S6	AUGUSTUS	start_codon	746310	746312	.	+	0	transcript_id "Ledus.S6G001400.t1"; gene_id "Ledus.S6G001400"
Ledus.S6	AUGUSTUS	CDS	746310	746595	0.32	+	0	transcript_id "Ledus.S6G001400.t1"; gene_id "Ledus.S6G001400"
Ledus.S6	AUGUSTUS	exon	746310	746595	.	+	.	transcript_id "Ledus.S6G001400.t1"; gene_id "Ledus.S6G001400"
Ledus.S6	AUGUSTUS	intron	746596	746943	.	+	.	transcript_id "Ledus.S6G001400.t1"; gene_id "Ledus.S6G001400"
Ledus.S6	AUGUSTUS	CDS	746944	747293	0.58	+	2	transcript_id "Ledus.S6G001400.t1"; gene_id "Ledus.S6G001400"
Ledus.S6	AUGUSTUS	exon	746944	747293	.	+	.	transcript_id "Ledus.S6G001400.t1"; gene_id "Ledus.S6G001400"
Ledus.S6	AUGUSTUS	stop_codon	747294	747296	.	+	0	transcript_id "Ledus.S6G001400.t1"; gene_id "Ledus.S6G001400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12303.t1 is derived from g5923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11117595	11118584	.	+	.	Ledus.S4G145900
Ledus.S4	AUGUSTUS	transcript	11117595	11118584	.	+	.	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	start_codon	11117595	11117597	.	+	0	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	CDS	11117595	11117773	0.82	+	0	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	exon	11117595	11117773	.	+	.	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	intron	11117774	11117943	.	+	.	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	CDS	11117944	11118055	0.94	+	1	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	exon	11117944	11118055	.	+	.	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	intron	11118056	11118294	.	+	.	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	CDS	11118295	11118349	0.98	+	0	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	exon	11118295	11118349	.	+	.	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	intron	11118350	11118540	.	+	.	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	CDS	11118541	11118584	0.97	+	2	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	exon	11118541	11118584	.	+	.	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	stop_codon	11118585	11118587	.	+	0	transcript_id "Ledus.S4G145900.t1"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	transcript	11117595	11118576	.	+	.	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	start_codon	11117595	11117597	.	+	0	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	CDS	11117595	11117773	0.75	+	0	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	exon	11117595	11117773	.	+	.	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	intron	11117774	11117943	.	+	.	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	CDS	11117944	11118055	0.77	+	1	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	exon	11117944	11118055	.	+	.	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	intron	11118056	11118294	.	+	.	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	CDS	11118295	11118349	0.85	+	0	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	exon	11118295	11118349	.	+	.	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	intron	11118350	11118550	.	+	.	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	CDS	11118551	11118576	0.85	+	2	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	exon	11118551	11118576	.	+	.	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
Ledus.S4	AUGUSTUS	stop_codon	11118577	11118579	.	+	0	transcript_id "Ledus.S4G145900.t2"; gene_id "Ledus.S4G145900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11204.t1 is derived from g4822.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2703102	2704746	.	-	.	Ledus.S4G036000
Ledus.S4	AUGUSTUS	transcript	2703102	2704480	.	-	.	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	stop_codon	2703099	2703101	.	-	0	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	CDS	2703102	2703178	1	-	2	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	exon	2703102	2703178	.	-	.	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	intron	2703179	2703267	.	-	.	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	CDS	2703268	2703513	0.79	-	2	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	exon	2703268	2703513	.	-	.	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	intron	2703514	2703630	.	-	.	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	CDS	2703631	2704107	0.77	-	2	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	exon	2703631	2704107	.	-	.	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	intron	2704108	2704189	.	-	.	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	CDS	2704190	2704381	0.99	-	2	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	exon	2704190	2704381	.	-	.	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	intron	2704382	2704470	.	-	.	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	CDS	2704471	2704480	0.99	-	0	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	exon	2704471	2704480	.	-	.	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	start_codon	2704478	2704480	.	-	0	transcript_id "Ledus.S4G036000.t1"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	transcript	2703102	2704746	.	-	.	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	stop_codon	2703099	2703101	.	-	0	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	CDS	2703102	2703178	1	-	2	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	exon	2703102	2703178	.	-	.	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	intron	2703179	2703267	.	-	.	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	CDS	2703268	2703513	0.72	-	2	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	exon	2703268	2703513	.	-	.	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	intron	2703514	2703630	.	-	.	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	CDS	2703631	2704107	0.7	-	2	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	exon	2703631	2704107	.	-	.	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	intron	2704108	2704189	.	-	.	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	CDS	2704190	2704381	0.87	-	2	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	exon	2704190	2704381	.	-	.	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	intron	2704382	2704589	.	-	.	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	CDS	2704590	2704746	0.87	-	0	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	exon	2704590	2704746	.	-	.	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
Ledus.S4	AUGUSTUS	start_codon	2704744	2704746	.	-	0	transcript_id "Ledus.S4G036000.t2"; gene_id "Ledus.S4G036000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4397.t1 is derived from g1833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16793426	16795194	.	-	.	Ledus.S1G181800
Ledus.S1	AUGUSTUS	transcript	16793426	16795194	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	stop_codon	16793423	16793425	.	-	0	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	CDS	16793426	16793453	1	-	1	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	exon	16793426	16793453	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	intron	16793454	16793590	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	CDS	16793591	16793682	1	-	0	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	exon	16793591	16793682	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	intron	16793683	16793805	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	CDS	16793806	16793830	1	-	1	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	exon	16793806	16793830	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	intron	16793831	16793963	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	CDS	16793964	16794015	1	-	2	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	exon	16793964	16794015	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	intron	16794016	16794194	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	CDS	16794195	16794252	1	-	0	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	exon	16794195	16794252	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	intron	16794253	16794407	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	CDS	16794408	16794480	1	-	1	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	exon	16794408	16794480	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	intron	16794481	16794665	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	CDS	16794666	16794745	1	-	0	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	exon	16794666	16794745	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	intron	16794746	16794868	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	CDS	16794869	16794895	1	-	0	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	exon	16794869	16794895	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	intron	16794896	16795077	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	CDS	16795078	16795194	0.82	-	0	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	exon	16795078	16795194	.	-	.	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
Ledus.S1	AUGUSTUS	start_codon	16795192	16795194	.	-	0	transcript_id "Ledus.S1G181800.t1"; gene_id "Ledus.S1G181800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11088.t1 is derived from g4706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1709521	1710036	.	+	.	Ledus.S4G024400
Ledus.S4	AUGUSTUS	transcript	1709521	1710036	.	+	.	transcript_id "Ledus.S4G024400.t1"; gene_id "Ledus.S4G024400"
Ledus.S4	AUGUSTUS	start_codon	1709521	1709523	.	+	0	transcript_id "Ledus.S4G024400.t1"; gene_id "Ledus.S4G024400"
Ledus.S4	AUGUSTUS	CDS	1709521	1710036	0.96	+	0	transcript_id "Ledus.S4G024400.t1"; gene_id "Ledus.S4G024400"
Ledus.S4	AUGUSTUS	exon	1709521	1710036	.	+	.	transcript_id "Ledus.S4G024400.t1"; gene_id "Ledus.S4G024400"
Ledus.S4	AUGUSTUS	stop_codon	1710037	1710039	.	+	0	transcript_id "Ledus.S4G024400.t1"; gene_id "Ledus.S4G024400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8434.t1 is derived from g13106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11681424	11684822	.	+	.	Ledus.S5G121200
Ledus.S5	AUGUSTUS	transcript	11681424	11684822	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	start_codon	11681424	11681426	.	+	0	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11681424	11681568	0.9	+	0	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11681424	11681568	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11681569	11681667	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11681668	11681708	1	+	2	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11681668	11681708	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11681709	11681786	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11681787	11681847	1	+	0	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11681787	11681847	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11681848	11681983	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11681984	11682086	1	+	2	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11681984	11682086	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11682087	11682184	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11682185	11682287	1	+	1	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11682185	11682287	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11682288	11682412	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11682413	11682466	1	+	0	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11682413	11682466	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11682467	11682994	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11682995	11683057	1	+	0	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11682995	11683057	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11683058	11683143	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11683144	11683193	1	+	0	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11683144	11683193	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11683194	11683284	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11683285	11683360	1	+	1	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11683285	11683360	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11683361	11683446	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11683447	11683647	1	+	0	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11683447	11683647	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11683648	11683728	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11683729	11683816	1	+	0	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11683729	11683816	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11683817	11683911	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11683912	11683997	1	+	2	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11683912	11683997	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11683998	11684091	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11684092	11684199	1	+	0	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11684092	11684199	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11684200	11684286	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11684287	11684331	1	+	0	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11684287	11684331	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11684332	11684402	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11684403	11684491	1	+	0	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11684403	11684491	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11684492	11684578	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11684579	11684619	1	+	1	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11684579	11684619	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	intron	11684620	11684688	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	CDS	11684689	11684822	0.65	+	2	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	exon	11684689	11684822	.	+	.	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
Ledus.S5	AUGUSTUS	stop_codon	11684823	11684825	.	+	0	transcript_id "Ledus.S5G121200.t1"; gene_id "Ledus.S5G121200"
# This transcript jg8736.t2 is derived from g9766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8737.t1 is derived from g9767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1697079	1698936	.	+	.	Ledus.S3G021400
Ledus.S3	AUGUSTUS	transcript	1697079	1698936	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	start_codon	1697079	1697081	.	+	0	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	CDS	1697079	1697103	0.81	+	0	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	exon	1697079	1697103	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	intron	1697104	1697184	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	CDS	1697185	1697217	1	+	2	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	exon	1697185	1697217	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	intron	1697218	1697298	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	CDS	1697299	1697399	1	+	2	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	exon	1697299	1697399	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	intron	1697400	1697470	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	CDS	1697471	1697583	1	+	0	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	exon	1697471	1697583	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	intron	1697584	1697683	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	CDS	1697684	1697783	1	+	1	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	exon	1697684	1697783	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	intron	1697784	1697847	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	CDS	1697848	1698059	1	+	0	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	exon	1697848	1698059	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	intron	1698060	1698150	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	CDS	1698151	1698244	1	+	1	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	exon	1698151	1698244	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	intron	1698245	1698309	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	CDS	1698310	1698452	1	+	0	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	exon	1698310	1698452	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	intron	1698453	1698538	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	CDS	1698539	1698622	1	+	1	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	exon	1698539	1698622	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	intron	1698623	1698721	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	CDS	1698722	1698811	1	+	1	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	exon	1698722	1698811	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	intron	1698812	1698893	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	CDS	1698894	1698936	0.71	+	1	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	exon	1698894	1698936	.	+	.	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
Ledus.S3	AUGUSTUS	stop_codon	1698937	1698939	.	+	0	transcript_id "Ledus.S3G021400.t1"; gene_id "Ledus.S3G021400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10104.t1 is derived from g11134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12725465	12726399	.	+	.	Ledus.S3G158100
Ledus.S3	AUGUSTUS	transcript	12725465	12726399	.	+	.	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	start_codon	12725465	12725467	.	+	0	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	CDS	12725465	12725691	1	+	0	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	exon	12725465	12725691	.	+	.	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	intron	12725692	12725774	.	+	.	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	CDS	12725775	12725911	1	+	1	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	exon	12725775	12725911	.	+	.	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	intron	12725912	12725993	.	+	.	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	CDS	12725994	12726130	1	+	2	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	exon	12725994	12726130	.	+	.	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	intron	12726131	12726225	.	+	.	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	CDS	12726226	12726399	1	+	0	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	exon	12726226	12726399	.	+	.	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
Ledus.S3	AUGUSTUS	stop_codon	12726400	12726402	.	+	0	transcript_id "Ledus.S3G158100.t1"; gene_id "Ledus.S3G158100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6379.t1 is derived from g3822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30907977	30908582	.	+	.	Ledus.S1G380000
Ledus.S1	AUGUSTUS	transcript	30907977	30908582	.	+	.	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	start_codon	30907977	30907979	.	+	0	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	CDS	30907977	30908056	0.72	+	0	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	exon	30907977	30908056	.	+	.	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	intron	30908057	30908192	.	+	.	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	CDS	30908193	30908254	1	+	1	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	exon	30908193	30908254	.	+	.	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	intron	30908255	30908350	.	+	.	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	CDS	30908351	30908415	1	+	2	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	exon	30908351	30908415	.	+	.	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	intron	30908416	30908546	.	+	.	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	CDS	30908547	30908582	1	+	0	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	exon	30908547	30908582	.	+	.	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
Ledus.S1	AUGUSTUS	stop_codon	30908583	30908585	.	+	0	transcript_id "Ledus.S1G380000.t1"; gene_id "Ledus.S1G380000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3525.t1 is derived from g961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9092843	9093052	.	+	.	Ledus.S1G094600
Ledus.S1	AUGUSTUS	transcript	9092843	9093052	.	+	.	transcript_id "Ledus.S1G094600.t1"; gene_id "Ledus.S1G094600"
Ledus.S1	AUGUSTUS	start_codon	9092843	9092845	.	+	0	transcript_id "Ledus.S1G094600.t1"; gene_id "Ledus.S1G094600"
Ledus.S1	AUGUSTUS	CDS	9092843	9093052	0.77	+	0	transcript_id "Ledus.S1G094600.t1"; gene_id "Ledus.S1G094600"
Ledus.S1	AUGUSTUS	exon	9092843	9093052	.	+	.	transcript_id "Ledus.S1G094600.t1"; gene_id "Ledus.S1G094600"
Ledus.S1	AUGUSTUS	stop_codon	9093053	9093055	.	+	0	transcript_id "Ledus.S1G094600.t1"; gene_id "Ledus.S1G094600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8087.t1 is derived from g12758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9099929	9100623	.	+	.	Ledus.S5G086500
Ledus.S5	AUGUSTUS	transcript	9099929	9100623	.	+	.	transcript_id "Ledus.S5G086500.t1"; gene_id "Ledus.S5G086500"
Ledus.S5	AUGUSTUS	start_codon	9099929	9099931	.	+	0	transcript_id "Ledus.S5G086500.t1"; gene_id "Ledus.S5G086500"
Ledus.S5	AUGUSTUS	CDS	9099929	9100081	0.37	+	0	transcript_id "Ledus.S5G086500.t1"; gene_id "Ledus.S5G086500"
Ledus.S5	AUGUSTUS	exon	9099929	9100081	.	+	.	transcript_id "Ledus.S5G086500.t1"; gene_id "Ledus.S5G086500"
Ledus.S5	AUGUSTUS	intron	9100082	9100287	.	+	.	transcript_id "Ledus.S5G086500.t1"; gene_id "Ledus.S5G086500"
Ledus.S5	AUGUSTUS	CDS	9100288	9100623	0.4	+	0	transcript_id "Ledus.S5G086500.t1"; gene_id "Ledus.S5G086500"
Ledus.S5	AUGUSTUS	exon	9100288	9100623	.	+	.	transcript_id "Ledus.S5G086500.t1"; gene_id "Ledus.S5G086500"
Ledus.S5	AUGUSTUS	stop_codon	9100624	9100626	.	+	0	transcript_id "Ledus.S5G086500.t1"; gene_id "Ledus.S5G086500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1967.t1 is derived from g8830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13903883	13905952	.	-	.	Ledus.S2G184900
Ledus.S2	AUGUSTUS	transcript	13903883	13905952	.	-	.	transcript_id "Ledus.S2G184900.t1"; gene_id "Ledus.S2G184900"
Ledus.S2	AUGUSTUS	stop_codon	13903880	13903882	.	-	0	transcript_id "Ledus.S2G184900.t1"; gene_id "Ledus.S2G184900"
Ledus.S2	AUGUSTUS	CDS	13903883	13905952	0.65	-	0	transcript_id "Ledus.S2G184900.t1"; gene_id "Ledus.S2G184900"
Ledus.S2	AUGUSTUS	exon	13903883	13905952	.	-	.	transcript_id "Ledus.S2G184900.t1"; gene_id "Ledus.S2G184900"
Ledus.S2	AUGUSTUS	start_codon	13905950	13905952	.	-	0	transcript_id "Ledus.S2G184900.t1"; gene_id "Ledus.S2G184900"
# This transcript jg4584.t2 is derived from g2021.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4584.t3 is derived from g2021.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4585.t1 is derived from g2022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17919931	17921526	.	-	.	Ledus.S1G200600
Ledus.S1	AUGUSTUS	transcript	17919931	17921526	.	-	.	transcript_id "Ledus.S1G200600.t1"; gene_id "Ledus.S1G200600"
Ledus.S1	AUGUSTUS	stop_codon	17919928	17919930	.	-	0	transcript_id "Ledus.S1G200600.t1"; gene_id "Ledus.S1G200600"
Ledus.S1	AUGUSTUS	CDS	17919931	17921526	0.92	-	0	transcript_id "Ledus.S1G200600.t1"; gene_id "Ledus.S1G200600"
Ledus.S1	AUGUSTUS	exon	17919931	17921526	.	-	.	transcript_id "Ledus.S1G200600.t1"; gene_id "Ledus.S1G200600"
Ledus.S1	AUGUSTUS	start_codon	17921524	17921526	.	-	0	transcript_id "Ledus.S1G200600.t1"; gene_id "Ledus.S1G200600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12325.t1 is derived from g5946.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11210821	11211513	.	-	.	Ledus.S4G148100
Ledus.S4	AUGUSTUS	transcript	11210861	11211513	.	-	.	transcript_id "Ledus.S4G148100.t1"; gene_id "Ledus.S4G148100"
Ledus.S4	AUGUSTUS	stop_codon	11210858	11210860	.	-	0	transcript_id "Ledus.S4G148100.t1"; gene_id "Ledus.S4G148100"
Ledus.S4	AUGUSTUS	CDS	11210861	11210909	0.51	-	1	transcript_id "Ledus.S4G148100.t1"; gene_id "Ledus.S4G148100"
Ledus.S4	AUGUSTUS	exon	11210861	11210909	.	-	.	transcript_id "Ledus.S4G148100.t1"; gene_id "Ledus.S4G148100"
Ledus.S4	AUGUSTUS	intron	11210910	11211001	.	-	.	transcript_id "Ledus.S4G148100.t1"; gene_id "Ledus.S4G148100"
Ledus.S4	AUGUSTUS	CDS	11211002	11211513	0.56	-	0	transcript_id "Ledus.S4G148100.t1"; gene_id "Ledus.S4G148100"
Ledus.S4	AUGUSTUS	exon	11211002	11211513	.	-	.	transcript_id "Ledus.S4G148100.t1"; gene_id "Ledus.S4G148100"
Ledus.S4	AUGUSTUS	start_codon	11211511	11211513	.	-	0	transcript_id "Ledus.S4G148100.t1"; gene_id "Ledus.S4G148100"
Ledus.S4	AUGUSTUS	transcript	11210821	11211513	.	-	.	transcript_id "Ledus.S4G148100.t2"; gene_id "Ledus.S4G148100"
Ledus.S4	AUGUSTUS	stop_codon	11210818	11210820	.	-	0	transcript_id "Ledus.S4G148100.t2"; gene_id "Ledus.S4G148100"
Ledus.S4	AUGUSTUS	CDS	11210821	11211513	0.82	-	0	transcript_id "Ledus.S4G148100.t2"; gene_id "Ledus.S4G148100"
Ledus.S4	AUGUSTUS	exon	11210821	11211513	.	-	.	transcript_id "Ledus.S4G148100.t2"; gene_id "Ledus.S4G148100"
Ledus.S4	AUGUSTUS	start_codon	11211511	11211513	.	-	0	transcript_id "Ledus.S4G148100.t2"; gene_id "Ledus.S4G148100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9866.t1 is derived from g10896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10684294	10685955	.	+	.	Ledus.S3G134300
Ledus.S3	AUGUSTUS	transcript	10684294	10685955	.	+	.	transcript_id "Ledus.S3G134300.t1"; gene_id "Ledus.S3G134300"
Ledus.S3	AUGUSTUS	start_codon	10684294	10684296	.	+	0	transcript_id "Ledus.S3G134300.t1"; gene_id "Ledus.S3G134300"
Ledus.S3	AUGUSTUS	CDS	10684294	10685594	0.67	+	0	transcript_id "Ledus.S3G134300.t1"; gene_id "Ledus.S3G134300"
Ledus.S3	AUGUSTUS	exon	10684294	10685594	.	+	.	transcript_id "Ledus.S3G134300.t1"; gene_id "Ledus.S3G134300"
Ledus.S3	AUGUSTUS	intron	10685595	10685734	.	+	.	transcript_id "Ledus.S3G134300.t1"; gene_id "Ledus.S3G134300"
Ledus.S3	AUGUSTUS	CDS	10685735	10685828	0.99	+	1	transcript_id "Ledus.S3G134300.t1"; gene_id "Ledus.S3G134300"
Ledus.S3	AUGUSTUS	exon	10685735	10685828	.	+	.	transcript_id "Ledus.S3G134300.t1"; gene_id "Ledus.S3G134300"
Ledus.S3	AUGUSTUS	intron	10685829	10685916	.	+	.	transcript_id "Ledus.S3G134300.t1"; gene_id "Ledus.S3G134300"
Ledus.S3	AUGUSTUS	CDS	10685917	10685955	1	+	0	transcript_id "Ledus.S3G134300.t1"; gene_id "Ledus.S3G134300"
Ledus.S3	AUGUSTUS	exon	10685917	10685955	.	+	.	transcript_id "Ledus.S3G134300.t1"; gene_id "Ledus.S3G134300"
Ledus.S3	AUGUSTUS	stop_codon	10685956	10685958	.	+	0	transcript_id "Ledus.S3G134300.t1"; gene_id "Ledus.S3G134300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1285.t1 is derived from g8146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9047958	9051985	.	+	.	Ledus.S2G116700
Ledus.S2	AUGUSTUS	transcript	9047958	9051985	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	start_codon	9047958	9047960	.	+	0	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9047958	9048135	0.45	+	0	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9047958	9048135	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9048136	9048353	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9048354	9048475	0.83	+	2	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9048354	9048475	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9048476	9048588	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9048589	9048761	0.78	+	0	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9048589	9048761	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9048762	9048842	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9048843	9049095	0.99	+	1	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9048843	9049095	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9049096	9049365	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9049366	9049777	1	+	0	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9049366	9049777	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9049778	9049880	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9049881	9050078	0.97	+	2	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9049881	9050078	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9050079	9050248	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9050249	9050715	0.99	+	2	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9050249	9050715	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9050716	9050850	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9050851	9051465	0.88	+	0	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9050851	9051465	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9051466	9051569	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9051570	9051781	0.89	+	0	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9051570	9051781	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9051782	9051873	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9051874	9051985	0.99	+	1	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9051874	9051985	.	+	.	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	stop_codon	9051986	9051988	.	+	0	transcript_id "Ledus.S2G116700.t1"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	transcript	9047958	9051985	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	start_codon	9047958	9047960	.	+	0	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9047958	9048135	0.3	+	0	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9047958	9048135	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9048136	9048353	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9048354	9048361	0.57	+	2	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9048354	9048361	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9048362	9048438	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9048439	9048509	0.57	+	0	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9048439	9048509	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9048510	9048666	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9048667	9048761	0.96	+	1	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9048667	9048761	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9048762	9048842	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9048843	9048942	0.97	+	2	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9048843	9048942	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9048943	9049066	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9049067	9049100	0.87	+	1	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9049067	9049100	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9049101	9049365	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9049366	9049777	0.99	+	0	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9049366	9049777	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9049778	9049880	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9049881	9050078	0.96	+	2	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9049881	9050078	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9050079	9050248	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9050249	9050715	0.99	+	2	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9050249	9050715	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9050716	9050850	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9050851	9051465	0.93	+	0	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9050851	9051465	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9051466	9051569	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9051570	9051781	0.92	+	0	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9051570	9051781	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	intron	9051782	9051873	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	CDS	9051874	9051985	1	+	1	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	exon	9051874	9051985	.	+	.	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
Ledus.S2	AUGUSTUS	stop_codon	9051986	9051988	.	+	0	transcript_id "Ledus.S2G116700.t2"; gene_id "Ledus.S2G116700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg10404.t1 is derived from g11434.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14839280	14842582	.	-	.	Ledus.S3G188100
Ledus.S3	AUGUSTUS	transcript	14839280	14841025	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	stop_codon	14839277	14839279	.	-	0	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14839280	14839406	1	-	1	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14839280	14839406	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14839407	14839477	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14839478	14839546	1	-	1	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14839478	14839546	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14839547	14839638	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14839639	14839700	1	-	0	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14839639	14839700	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14839701	14839773	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14839774	14840076	1	-	0	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14839774	14840076	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14840077	14840401	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14840402	14840587	1	-	0	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14840402	14840587	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14840588	14840673	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14840674	14840749	1	-	1	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14840674	14840749	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14840750	14840836	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14840837	14840907	1	-	0	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14840837	14840907	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14840908	14840986	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14840987	14841025	0.47	-	0	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14840987	14841025	.	-	.	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	start_codon	14841023	14841025	.	-	0	transcript_id "Ledus.S3G188100.t1"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	transcript	14839280	14841025	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	stop_codon	14839277	14839279	.	-	0	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14839280	14839406	1	-	1	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14839280	14839406	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14839407	14839477	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14839478	14839546	1	-	1	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14839478	14839546	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14839547	14839638	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14839639	14839700	1	-	0	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14839639	14839700	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14839701	14839773	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14839774	14839932	0.96	-	0	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14839774	14839932	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14839933	14840401	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14840402	14840587	1	-	0	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14840402	14840587	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14840588	14840673	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14840674	14840749	1	-	1	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14840674	14840749	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14840750	14840836	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14840837	14840907	1	-	0	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14840837	14840907	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14840908	14840986	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14840987	14841025	0.46	-	0	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14840987	14841025	.	-	.	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	start_codon	14841023	14841025	.	-	0	transcript_id "Ledus.S3G188100.t2"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	transcript	14839280	14842582	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	stop_codon	14839277	14839279	.	-	0	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14839280	14839406	1	-	1	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14839280	14839406	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14839407	14839477	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14839478	14839546	1	-	1	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14839478	14839546	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14839547	14839638	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14839639	14839700	1	-	0	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14839639	14839700	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14839701	14839773	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14839774	14840076	1	-	0	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14839774	14840076	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14840077	14840401	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14840402	14840587	1	-	0	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14840402	14840587	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14840588	14840673	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14840674	14840749	1	-	1	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14840674	14840749	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14840750	14840836	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14840837	14840907	1	-	0	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14840837	14840907	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14840908	14840986	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14840987	14841113	1	-	1	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14840987	14841113	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14841114	14841204	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14841205	14841260	0.99	-	0	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14841205	14841260	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14841261	14841363	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14841364	14841558	1	-	0	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14841364	14841558	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14841559	14841654	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14841655	14841858	1	-	0	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14841655	14841858	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14841859	14841940	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14841941	14842031	1	-	1	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14841941	14842031	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14842032	14842146	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14842147	14842228	0.35	-	2	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14842147	14842228	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14842229	14842452	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14842453	14842582	0.4	-	0	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14842453	14842582	.	-	.	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	start_codon	14842580	14842582	.	-	0	transcript_id "Ledus.S3G188100.t3"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	transcript	14841111	14842582	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	stop_codon	14841108	14841110	.	-	0	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14841111	14841113	0.76	-	0	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14841111	14841113	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14841114	14841204	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14841205	14841270	0.76	-	0	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14841205	14841270	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14841271	14841363	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14841364	14841558	1	-	0	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14841364	14841558	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14841559	14841654	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14841655	14841858	1	-	0	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14841655	14841858	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14841859	14841940	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14841941	14842031	1	-	1	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14841941	14842031	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14842032	14842146	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14842147	14842228	0.38	-	2	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14842147	14842228	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	intron	14842229	14842452	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	CDS	14842453	14842582	0.39	-	0	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	exon	14842453	14842582	.	-	.	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
Ledus.S3	AUGUSTUS	start_codon	14842580	14842582	.	-	0	transcript_id "Ledus.S3G188100.t4"; gene_id "Ledus.S3G188100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12433.t1 is derived from g6054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11996331	11998873	.	+	.	Ledus.S4G158900
Ledus.S4	AUGUSTUS	transcript	11996331	11998873	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	start_codon	11996331	11996333	.	+	0	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	CDS	11996331	11996449	0.62	+	0	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	exon	11996331	11996449	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	intron	11996450	11996531	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	CDS	11996532	11996669	1	+	1	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	exon	11996532	11996669	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	intron	11996670	11996766	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	CDS	11996767	11996975	1	+	1	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	exon	11996767	11996975	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	intron	11996976	11997478	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	CDS	11997479	11997678	1	+	2	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	exon	11997479	11997678	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	intron	11997679	11997782	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	CDS	11997783	11998291	0.99	+	0	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	exon	11997783	11998291	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	intron	11998292	11998380	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	CDS	11998381	11998660	1	+	1	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	exon	11998381	11998660	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	intron	11998661	11998837	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	CDS	11998838	11998873	1	+	0	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	exon	11998838	11998873	.	+	.	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
Ledus.S4	AUGUSTUS	stop_codon	11998874	11998876	.	+	0	transcript_id "Ledus.S4G158900.t1"; gene_id "Ledus.S4G158900"
# This transcript jg11058.t2 is derived from g4676.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11058.t3 is derived from g4676.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11058.t4 is derived from g4676.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11059.t1 is derived from g4677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1523235	1525969	.	-	.	Ledus.S4G021500
Ledus.S4	AUGUSTUS	transcript	1523235	1525969	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	stop_codon	1523232	1523234	.	-	0	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	CDS	1523235	1523411	0.99	-	0	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	exon	1523235	1523411	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	intron	1523412	1523546	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	CDS	1523547	1523680	1	-	2	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	exon	1523547	1523680	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	intron	1523681	1523799	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	CDS	1523800	1523968	0.99	-	0	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	exon	1523800	1523968	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	intron	1523969	1524061	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	CDS	1524062	1524241	1	-	0	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	exon	1524062	1524241	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	intron	1524242	1524335	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	CDS	1524336	1524781	0.96	-	2	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	exon	1524336	1524781	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	intron	1524782	1524910	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	CDS	1524911	1525069	0.98	-	2	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	exon	1524911	1525069	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	intron	1525070	1525161	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	CDS	1525162	1525468	0.97	-	0	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	exon	1525162	1525468	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	intron	1525469	1525581	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	CDS	1525582	1525651	0.96	-	1	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	exon	1525582	1525651	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	intron	1525652	1525886	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	CDS	1525887	1525969	0.69	-	0	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	exon	1525887	1525969	.	-	.	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
Ledus.S4	AUGUSTUS	start_codon	1525967	1525969	.	-	0	transcript_id "Ledus.S4G021500.t1"; gene_id "Ledus.S4G021500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10036.t1 is derived from g11066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12106351	12112276	.	-	.	Ledus.S3G151300
Ledus.S3	AUGUSTUS	transcript	12106351	12112276	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	stop_codon	12106348	12106350	.	-	0	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	CDS	12106351	12106728	1	-	0	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	exon	12106351	12106728	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	intron	12106729	12106848	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	CDS	12106849	12107193	0.95	-	0	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	exon	12106849	12107193	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	intron	12107194	12107279	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	CDS	12107280	12108434	1	-	0	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	exon	12107280	12108434	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	intron	12108435	12108561	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	CDS	12108562	12108747	1	-	0	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	exon	12108562	12108747	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	intron	12108748	12108989	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	CDS	12108990	12109247	1	-	0	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	exon	12108990	12109247	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	intron	12109248	12109454	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	CDS	12109455	12110513	1	-	0	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	exon	12109455	12110513	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	intron	12110514	12110635	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	CDS	12110636	12110746	1	-	0	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	exon	12110636	12110746	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	intron	12110747	12110844	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	CDS	12110845	12111567	0.99	-	0	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	exon	12110845	12111567	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	intron	12111568	12111727	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	CDS	12111728	12111820	0.98	-	0	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	exon	12111728	12111820	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	intron	12111821	12111937	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	CDS	12111938	12112276	0.77	-	0	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	exon	12111938	12112276	.	-	.	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
Ledus.S3	AUGUSTUS	start_codon	12112274	12112276	.	-	0	transcript_id "Ledus.S3G151300.t1"; gene_id "Ledus.S3G151300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4786.t1 is derived from g2224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19764363	19765524	.	+	.	Ledus.S1G220700
Ledus.S1	AUGUSTUS	transcript	19764363	19765524	.	+	.	transcript_id "Ledus.S1G220700.t1"; gene_id "Ledus.S1G220700"
Ledus.S1	AUGUSTUS	start_codon	19764363	19764365	.	+	0	transcript_id "Ledus.S1G220700.t1"; gene_id "Ledus.S1G220700"
Ledus.S1	AUGUSTUS	CDS	19764363	19764611	0.82	+	0	transcript_id "Ledus.S1G220700.t1"; gene_id "Ledus.S1G220700"
Ledus.S1	AUGUSTUS	exon	19764363	19764611	.	+	.	transcript_id "Ledus.S1G220700.t1"; gene_id "Ledus.S1G220700"
Ledus.S1	AUGUSTUS	intron	19764612	19764692	.	+	.	transcript_id "Ledus.S1G220700.t1"; gene_id "Ledus.S1G220700"
Ledus.S1	AUGUSTUS	CDS	19764693	19765047	1	+	0	transcript_id "Ledus.S1G220700.t1"; gene_id "Ledus.S1G220700"
Ledus.S1	AUGUSTUS	exon	19764693	19765047	.	+	.	transcript_id "Ledus.S1G220700.t1"; gene_id "Ledus.S1G220700"
Ledus.S1	AUGUSTUS	intron	19765048	19765129	.	+	.	transcript_id "Ledus.S1G220700.t1"; gene_id "Ledus.S1G220700"
Ledus.S1	AUGUSTUS	CDS	19765130	19765524	1	+	2	transcript_id "Ledus.S1G220700.t1"; gene_id "Ledus.S1G220700"
Ledus.S1	AUGUSTUS	exon	19765130	19765524	.	+	.	transcript_id "Ledus.S1G220700.t1"; gene_id "Ledus.S1G220700"
Ledus.S1	AUGUSTUS	stop_codon	19765525	19765527	.	+	0	transcript_id "Ledus.S1G220700.t1"; gene_id "Ledus.S1G220700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3252.t1 is derived from g687.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7134986	7135666	.	+	.	Ledus.S1G067300
Ledus.S1	AUGUSTUS	transcript	7134986	7135666	.	+	.	transcript_id "Ledus.S1G067300.t1"; gene_id "Ledus.S1G067300"
Ledus.S1	AUGUSTUS	start_codon	7134986	7134988	.	+	0	transcript_id "Ledus.S1G067300.t1"; gene_id "Ledus.S1G067300"
Ledus.S1	AUGUSTUS	CDS	7134986	7135666	0.99	+	0	transcript_id "Ledus.S1G067300.t1"; gene_id "Ledus.S1G067300"
Ledus.S1	AUGUSTUS	exon	7134986	7135666	.	+	.	transcript_id "Ledus.S1G067300.t1"; gene_id "Ledus.S1G067300"
Ledus.S1	AUGUSTUS	stop_codon	7135667	7135669	.	+	0	transcript_id "Ledus.S1G067300.t1"; gene_id "Ledus.S1G067300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3016.t1 is derived from g451.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5347642	5349598	.	-	.	Ledus.S1G043700
Ledus.S1	AUGUSTUS	transcript	5347642	5349598	.	-	.	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	stop_codon	5347639	5347641	.	-	0	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	CDS	5347642	5347946	0.98	-	2	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	exon	5347642	5347946	.	-	.	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	intron	5347947	5348032	.	-	.	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	CDS	5348033	5348191	1	-	2	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	exon	5348033	5348191	.	-	.	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	intron	5348192	5348301	.	-	.	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	CDS	5348302	5348400	0.8	-	2	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	exon	5348302	5348400	.	-	.	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	intron	5348401	5348499	.	-	.	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	CDS	5348500	5348753	0.98	-	1	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	exon	5348500	5348753	.	-	.	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	intron	5348754	5349053	.	-	.	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	CDS	5349054	5349598	0.52	-	0	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	exon	5349054	5349598	.	-	.	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
Ledus.S1	AUGUSTUS	start_codon	5349596	5349598	.	-	0	transcript_id "Ledus.S1G043700.t1"; gene_id "Ledus.S1G043700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9327.t1 is derived from g10357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6144539	6151436	.	+	.	Ledus.S3G080400
Ledus.S3	AUGUSTUS	transcript	6144539	6151436	.	+	.	transcript_id "Ledus.S3G080400.t1"; gene_id "Ledus.S3G080400"
Ledus.S3	AUGUSTUS	start_codon	6144539	6144541	.	+	0	transcript_id "Ledus.S3G080400.t1"; gene_id "Ledus.S3G080400"
Ledus.S3	AUGUSTUS	CDS	6144539	6146366	0.84	+	0	transcript_id "Ledus.S3G080400.t1"; gene_id "Ledus.S3G080400"
Ledus.S3	AUGUSTUS	exon	6144539	6146366	.	+	.	transcript_id "Ledus.S3G080400.t1"; gene_id "Ledus.S3G080400"
Ledus.S3	AUGUSTUS	intron	6146367	6146472	.	+	.	transcript_id "Ledus.S3G080400.t1"; gene_id "Ledus.S3G080400"
Ledus.S3	AUGUSTUS	CDS	6146473	6151436	0.99	+	2	transcript_id "Ledus.S3G080400.t1"; gene_id "Ledus.S3G080400"
Ledus.S3	AUGUSTUS	exon	6146473	6151436	.	+	.	transcript_id "Ledus.S3G080400.t1"; gene_id "Ledus.S3G080400"
Ledus.S3	AUGUSTUS	stop_codon	6151437	6151439	.	+	0	transcript_id "Ledus.S3G080400.t1"; gene_id "Ledus.S3G080400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg540.t1 is derived from g7401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3123281	3125156	.	-	.	Ledus.S2G042200
Ledus.S2	AUGUSTUS	transcript	3123281	3125156	.	-	.	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	stop_codon	3123278	3123280	.	-	0	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	CDS	3123281	3123689	1	-	1	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	exon	3123281	3123689	.	-	.	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	intron	3123690	3123869	.	-	.	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	CDS	3123870	3124038	0.66	-	2	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	exon	3123870	3124038	.	-	.	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	intron	3124039	3124295	.	-	.	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	CDS	3124296	3124446	0.66	-	0	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	exon	3124296	3124446	.	-	.	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	intron	3124447	3124853	.	-	.	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	CDS	3124854	3125156	0.38	-	0	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	exon	3124854	3125156	.	-	.	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
Ledus.S2	AUGUSTUS	start_codon	3125154	3125156	.	-	0	transcript_id "Ledus.S2G042200.t1"; gene_id "Ledus.S2G042200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6095.t1 is derived from g3538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28889340	28891368	.	+	.	Ledus.S1G351600
Ledus.S1	AUGUSTUS	transcript	28889340	28891368	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	start_codon	28889340	28889342	.	+	0	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	CDS	28889340	28889725	1	+	0	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	exon	28889340	28889725	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	intron	28889726	28890031	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	CDS	28890032	28890144	1	+	1	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	exon	28890032	28890144	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	intron	28890145	28890237	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	CDS	28890238	28890329	1	+	2	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	exon	28890238	28890329	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	intron	28890330	28890412	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	CDS	28890413	28890499	1	+	0	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	exon	28890413	28890499	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	intron	28890500	28890587	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	CDS	28890588	28890659	0.54	+	0	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	exon	28890588	28890659	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	intron	28890660	28891077	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	CDS	28891078	28891169	0.55	+	0	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	exon	28891078	28891169	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	intron	28891170	28891367	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	CDS	28891368	28891368	0.75	+	1	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	exon	28891368	28891368	.	+	.	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
Ledus.S1	AUGUSTUS	stop_codon	28891369	28891371	.	+	0	transcript_id "Ledus.S1G351600.t1"; gene_id "Ledus.S1G351600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10798.t1 is derived from g11830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17824944	17825468	.	+	.	Ledus.S3G227500
Ledus.S3	AUGUSTUS	transcript	17824944	17825468	.	+	.	transcript_id "Ledus.S3G227500.t1"; gene_id "Ledus.S3G227500"
Ledus.S3	AUGUSTUS	start_codon	17824944	17824946	.	+	0	transcript_id "Ledus.S3G227500.t1"; gene_id "Ledus.S3G227500"
Ledus.S3	AUGUSTUS	CDS	17824944	17825226	0.92	+	0	transcript_id "Ledus.S3G227500.t1"; gene_id "Ledus.S3G227500"
Ledus.S3	AUGUSTUS	exon	17824944	17825226	.	+	.	transcript_id "Ledus.S3G227500.t1"; gene_id "Ledus.S3G227500"
Ledus.S3	AUGUSTUS	intron	17825227	17825361	.	+	.	transcript_id "Ledus.S3G227500.t1"; gene_id "Ledus.S3G227500"
Ledus.S3	AUGUSTUS	CDS	17825362	17825468	0.81	+	2	transcript_id "Ledus.S3G227500.t1"; gene_id "Ledus.S3G227500"
Ledus.S3	AUGUSTUS	exon	17825362	17825468	.	+	.	transcript_id "Ledus.S3G227500.t1"; gene_id "Ledus.S3G227500"
Ledus.S3	AUGUSTUS	stop_codon	17825469	17825471	.	+	0	transcript_id "Ledus.S3G227500.t1"; gene_id "Ledus.S3G227500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9323.t1 is derived from g10353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6100846	6102533	.	+	.	Ledus.S3G080000
Ledus.S3	AUGUSTUS	transcript	6100846	6102533	.	+	.	transcript_id "Ledus.S3G080000.t1"; gene_id "Ledus.S3G080000"
Ledus.S3	AUGUSTUS	start_codon	6100846	6100848	.	+	0	transcript_id "Ledus.S3G080000.t1"; gene_id "Ledus.S3G080000"
Ledus.S3	AUGUSTUS	CDS	6100846	6102161	0.34	+	0	transcript_id "Ledus.S3G080000.t1"; gene_id "Ledus.S3G080000"
Ledus.S3	AUGUSTUS	exon	6100846	6102161	.	+	.	transcript_id "Ledus.S3G080000.t1"; gene_id "Ledus.S3G080000"
Ledus.S3	AUGUSTUS	intron	6102162	6102418	.	+	.	transcript_id "Ledus.S3G080000.t1"; gene_id "Ledus.S3G080000"
Ledus.S3	AUGUSTUS	CDS	6102419	6102533	0.86	+	1	transcript_id "Ledus.S3G080000.t1"; gene_id "Ledus.S3G080000"
Ledus.S3	AUGUSTUS	exon	6102419	6102533	.	+	.	transcript_id "Ledus.S3G080000.t1"; gene_id "Ledus.S3G080000"
Ledus.S3	AUGUSTUS	stop_codon	6102534	6102536	.	+	0	transcript_id "Ledus.S3G080000.t1"; gene_id "Ledus.S3G080000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12373.t1 is derived from g5994.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11477877	11482375	.	-	.	Ledus.S4G152900
Ledus.S4	AUGUSTUS	transcript	11477877	11482375	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	stop_codon	11477874	11477876	.	-	0	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	CDS	11477877	11478237	1	-	1	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	exon	11477877	11478237	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	intron	11478238	11478337	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	CDS	11478338	11479125	1	-	0	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	exon	11478338	11479125	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	intron	11479126	11479217	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	CDS	11479218	11479430	1	-	0	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	exon	11479218	11479430	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	intron	11479431	11479525	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	CDS	11479526	11481068	1	-	1	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	exon	11479526	11481068	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	intron	11481069	11481148	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	CDS	11481149	11481606	1	-	0	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	exon	11481149	11481606	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	intron	11481607	11481860	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	CDS	11481861	11482039	1	-	2	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	exon	11481861	11482039	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	intron	11482040	11482108	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	CDS	11482109	11482163	1	-	0	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	exon	11482109	11482163	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	intron	11482164	11482240	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	CDS	11482241	11482375	0.64	-	0	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	exon	11482241	11482375	.	-	.	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
Ledus.S4	AUGUSTUS	start_codon	11482373	11482375	.	-	0	transcript_id "Ledus.S4G152900.t1"; gene_id "Ledus.S4G152900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2538.t1 is derived from g9401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18757312	18758195	.	+	.	Ledus.S2G242000
Ledus.S2	AUGUSTUS	transcript	18757312	18758195	.	+	.	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	start_codon	18757312	18757314	.	+	0	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	CDS	18757312	18757557	0.99	+	0	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	exon	18757312	18757557	.	+	.	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	intron	18757558	18757625	.	+	.	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	CDS	18757626	18757730	1	+	0	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	exon	18757626	18757730	.	+	.	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	intron	18757731	18757814	.	+	.	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	CDS	18757815	18757862	1	+	0	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	exon	18757815	18757862	.	+	.	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	intron	18757863	18757958	.	+	.	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	CDS	18757959	18758195	1	+	0	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	exon	18757959	18758195	.	+	.	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
Ledus.S2	AUGUSTUS	stop_codon	18758196	18758198	.	+	0	transcript_id "Ledus.S2G242000.t1"; gene_id "Ledus.S2G242000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg750.t1 is derived from g7611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4816851	4817876	.	-	.	Ledus.S2G063200
Ledus.S2	AUGUSTUS	transcript	4816851	4817876	.	-	.	transcript_id "Ledus.S2G063200.t1"; gene_id "Ledus.S2G063200"
Ledus.S2	AUGUSTUS	stop_codon	4816848	4816850	.	-	0	transcript_id "Ledus.S2G063200.t1"; gene_id "Ledus.S2G063200"
Ledus.S2	AUGUSTUS	CDS	4816851	4817653	1	-	2	transcript_id "Ledus.S2G063200.t1"; gene_id "Ledus.S2G063200"
Ledus.S2	AUGUSTUS	exon	4816851	4817653	.	-	.	transcript_id "Ledus.S2G063200.t1"; gene_id "Ledus.S2G063200"
Ledus.S2	AUGUSTUS	intron	4817654	4817743	.	-	.	transcript_id "Ledus.S2G063200.t1"; gene_id "Ledus.S2G063200"
Ledus.S2	AUGUSTUS	CDS	4817744	4817876	0.61	-	0	transcript_id "Ledus.S2G063200.t1"; gene_id "Ledus.S2G063200"
Ledus.S2	AUGUSTUS	exon	4817744	4817876	.	-	.	transcript_id "Ledus.S2G063200.t1"; gene_id "Ledus.S2G063200"
Ledus.S2	AUGUSTUS	start_codon	4817874	4817876	.	-	0	transcript_id "Ledus.S2G063200.t1"; gene_id "Ledus.S2G063200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8298.t1 is derived from g12969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10547672	10549066	.	-	.	Ledus.S5G107600
Ledus.S5	AUGUSTUS	transcript	10547672	10549066	.	-	.	transcript_id "Ledus.S5G107600.t1"; gene_id "Ledus.S5G107600"
Ledus.S5	AUGUSTUS	stop_codon	10547669	10547671	.	-	0	transcript_id "Ledus.S5G107600.t1"; gene_id "Ledus.S5G107600"
Ledus.S5	AUGUSTUS	CDS	10547672	10549066	0.56	-	0	transcript_id "Ledus.S5G107600.t1"; gene_id "Ledus.S5G107600"
Ledus.S5	AUGUSTUS	exon	10547672	10549066	.	-	.	transcript_id "Ledus.S5G107600.t1"; gene_id "Ledus.S5G107600"
Ledus.S5	AUGUSTUS	start_codon	10549064	10549066	.	-	0	transcript_id "Ledus.S5G107600.t1"; gene_id "Ledus.S5G107600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12423.t1 is derived from g6044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11960012	11960548	.	+	.	Ledus.S4G157900
Ledus.S4	AUGUSTUS	transcript	11960012	11960548	.	+	.	transcript_id "Ledus.S4G157900.t1"; gene_id "Ledus.S4G157900"
Ledus.S4	AUGUSTUS	start_codon	11960012	11960014	.	+	0	transcript_id "Ledus.S4G157900.t1"; gene_id "Ledus.S4G157900"
Ledus.S4	AUGUSTUS	CDS	11960012	11960548	0.79	+	0	transcript_id "Ledus.S4G157900.t1"; gene_id "Ledus.S4G157900"
Ledus.S4	AUGUSTUS	exon	11960012	11960548	.	+	.	transcript_id "Ledus.S4G157900.t1"; gene_id "Ledus.S4G157900"
Ledus.S4	AUGUSTUS	stop_codon	11960549	11960551	.	+	0	transcript_id "Ledus.S4G157900.t1"; gene_id "Ledus.S4G157900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9769.t1 is derived from g10799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9689352	9692371	.	+	.	Ledus.S3G124600
Ledus.S3	AUGUSTUS	transcript	9689352	9692371	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	start_codon	9689352	9689354	.	+	0	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	CDS	9689352	9689459	0.86	+	0	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	exon	9689352	9689459	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	intron	9689460	9689543	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	CDS	9689544	9689655	1	+	0	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	exon	9689544	9689655	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	intron	9689656	9689740	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	CDS	9689741	9689971	1	+	2	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	exon	9689741	9689971	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	intron	9689972	9690062	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	CDS	9690063	9690148	1	+	2	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	exon	9690063	9690148	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	intron	9690149	9690248	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	CDS	9690249	9690364	0.98	+	0	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	exon	9690249	9690364	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	intron	9690365	9690467	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	CDS	9690468	9690548	0.81	+	1	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	exon	9690468	9690548	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	intron	9690549	9690664	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	CDS	9690665	9690871	0.99	+	1	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	exon	9690665	9690871	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	intron	9690872	9691156	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	CDS	9691157	9691308	1	+	1	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	exon	9691157	9691308	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	intron	9691309	9691421	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	CDS	9691422	9692164	0.82	+	2	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	exon	9691422	9692164	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	intron	9692165	9692275	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	CDS	9692276	9692371	0.9	+	0	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	exon	9692276	9692371	.	+	.	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
Ledus.S3	AUGUSTUS	stop_codon	9692372	9692374	.	+	0	transcript_id "Ledus.S3G124600.t1"; gene_id "Ledus.S3G124600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3531.t1 is derived from g967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9300532	9302568	.	-	.	Ledus.S1G095200
Ledus.S1	AUGUSTUS	transcript	9300532	9302568	.	-	.	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	stop_codon	9300529	9300531	.	-	0	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	CDS	9300532	9301047	1	-	0	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	exon	9300532	9301047	.	-	.	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	intron	9301048	9301134	.	-	.	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	CDS	9301135	9301495	0.99	-	1	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	exon	9301135	9301495	.	-	.	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	intron	9301496	9301589	.	-	.	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	CDS	9301590	9301765	1	-	0	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	exon	9301590	9301765	.	-	.	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	intron	9301766	9301906	.	-	.	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	CDS	9301907	9301981	1	-	0	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	exon	9301907	9301981	.	-	.	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	intron	9301982	9302415	.	-	.	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	CDS	9302416	9302568	0.92	-	0	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	exon	9302416	9302568	.	-	.	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
Ledus.S1	AUGUSTUS	start_codon	9302566	9302568	.	-	0	transcript_id "Ledus.S1G095200.t1"; gene_id "Ledus.S1G095200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12694.t1 is derived from g6316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13938681	13943953	.	+	.	Ledus.S4G185000
Ledus.S4	AUGUSTUS	transcript	13938681	13943953	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	start_codon	13938681	13938683	.	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13938681	13938887	0.22	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13938681	13938887	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13938888	13939013	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13939014	13939077	0.59	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13939014	13939077	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13939078	13939169	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13939170	13939277	1	+	2	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13939170	13939277	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13939278	13939367	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13939368	13939528	1	+	2	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13939368	13939528	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13939529	13939624	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13939625	13939717	1	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13939625	13939717	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13939718	13939827	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13939828	13940013	1	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13939828	13940013	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13940014	13940147	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13940148	13940309	0.96	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13940148	13940309	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13940310	13940388	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13940389	13940533	1	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13940389	13940533	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13940534	13940675	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13940676	13940818	0.99	+	2	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13940676	13940818	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13940819	13940930	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13940931	13940987	1	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13940931	13940987	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13940988	13941182	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13941183	13941262	1	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13941183	13941262	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13941263	13941361	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13941362	13941437	1	+	1	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13941362	13941437	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13941438	13941520	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13941521	13941706	1	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13941521	13941706	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13941707	13941804	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13941805	13941872	0.96	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13941805	13941872	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13941873	13941969	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13941970	13942088	1	+	1	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13941970	13942088	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13942089	13942199	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13942200	13942321	0.89	+	2	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13942200	13942321	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13942322	13942590	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13942591	13942689	0.36	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13942591	13942689	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13942690	13942803	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13942804	13943283	0.91	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13942804	13943283	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13943284	13943374	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13943375	13943473	1	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13943375	13943473	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13943474	13943555	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13943556	13943798	1	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13943556	13943798	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13943799	13943887	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13943888	13943953	1	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13943888	13943953	.	+	.	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	stop_codon	13943954	13943956	.	+	0	transcript_id "Ledus.S4G185000.t1"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	transcript	13938681	13943953	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	start_codon	13938681	13938683	.	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13938681	13938887	0.21	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13938681	13938887	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13938888	13939013	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13939014	13939077	0.66	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13939014	13939077	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13939078	13939169	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13939170	13939277	1	+	2	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13939170	13939277	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13939278	13939367	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13939368	13939528	1	+	2	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13939368	13939528	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13939529	13939624	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13939625	13939717	1	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13939625	13939717	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13939718	13939827	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13939828	13940013	1	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13939828	13940013	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13940014	13940094	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13940095	13940114	0.74	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13940095	13940114	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13940115	13940209	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13940210	13940309	0.75	+	1	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13940210	13940309	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13940310	13940388	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13940389	13940533	1	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13940389	13940533	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13940534	13940675	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13940676	13940818	1	+	2	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13940676	13940818	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13940819	13940930	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13940931	13940987	1	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13940931	13940987	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13940988	13941182	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13941183	13941262	1	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13941183	13941262	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13941263	13941361	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13941362	13941437	1	+	1	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13941362	13941437	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13941438	13941520	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13941521	13941706	1	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13941521	13941706	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13941707	13941804	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13941805	13941872	0.98	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13941805	13941872	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13941873	13941969	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13941970	13942088	1	+	1	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13941970	13942088	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13942089	13942199	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13942200	13942321	0.85	+	2	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13942200	13942321	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13942322	13942590	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13942591	13942689	0.53	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13942591	13942689	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13942690	13942803	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13942804	13943283	0.87	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13942804	13943283	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13943284	13943374	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13943375	13943473	1	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13943375	13943473	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13943474	13943555	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13943556	13943798	1	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13943556	13943798	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	intron	13943799	13943887	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	CDS	13943888	13943953	1	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	exon	13943888	13943953	.	+	.	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
Ledus.S4	AUGUSTUS	stop_codon	13943954	13943956	.	+	0	transcript_id "Ledus.S4G185000.t2"; gene_id "Ledus.S4G185000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11659.t1 is derived from g5278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5798519	5799735	.	+	.	Ledus.S4G081500
Ledus.S4	AUGUSTUS	transcript	5798519	5799735	.	+	.	transcript_id "Ledus.S4G081500.t1"; gene_id "Ledus.S4G081500"
Ledus.S4	AUGUSTUS	start_codon	5798519	5798521	.	+	0	transcript_id "Ledus.S4G081500.t1"; gene_id "Ledus.S4G081500"
Ledus.S4	AUGUSTUS	CDS	5798519	5798791	0.57	+	0	transcript_id "Ledus.S4G081500.t1"; gene_id "Ledus.S4G081500"
Ledus.S4	AUGUSTUS	exon	5798519	5798791	.	+	.	transcript_id "Ledus.S4G081500.t1"; gene_id "Ledus.S4G081500"
Ledus.S4	AUGUSTUS	intron	5798792	5799393	.	+	.	transcript_id "Ledus.S4G081500.t1"; gene_id "Ledus.S4G081500"
Ledus.S4	AUGUSTUS	CDS	5799394	5799735	0.97	+	0	transcript_id "Ledus.S4G081500.t1"; gene_id "Ledus.S4G081500"
Ledus.S4	AUGUSTUS	exon	5799394	5799735	.	+	.	transcript_id "Ledus.S4G081500.t1"; gene_id "Ledus.S4G081500"
Ledus.S4	AUGUSTUS	stop_codon	5799736	5799738	.	+	0	transcript_id "Ledus.S4G081500.t1"; gene_id "Ledus.S4G081500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11416.t1 is derived from g5034.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4133967	4136504	.	+	.	Ledus.S4G057200
Ledus.S4	AUGUSTUS	transcript	4133967	4135020	.	+	.	transcript_id "Ledus.S4G057200.t1"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	start_codon	4133967	4133969	.	+	0	transcript_id "Ledus.S4G057200.t1"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	CDS	4133967	4134361	0.99	+	0	transcript_id "Ledus.S4G057200.t1"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	exon	4133967	4134361	.	+	.	transcript_id "Ledus.S4G057200.t1"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	intron	4134362	4134553	.	+	.	transcript_id "Ledus.S4G057200.t1"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	CDS	4134554	4134780	0.93	+	1	transcript_id "Ledus.S4G057200.t1"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	exon	4134554	4134780	.	+	.	transcript_id "Ledus.S4G057200.t1"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	intron	4134781	4135006	.	+	.	transcript_id "Ledus.S4G057200.t1"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	CDS	4135007	4135020	0.89	+	2	transcript_id "Ledus.S4G057200.t1"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	exon	4135007	4135020	.	+	.	transcript_id "Ledus.S4G057200.t1"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	stop_codon	4135021	4135023	.	+	0	transcript_id "Ledus.S4G057200.t1"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	transcript	4133967	4136504	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	start_codon	4133967	4133969	.	+	0	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	CDS	4133967	4134361	0.99	+	0	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	exon	4133967	4134361	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	intron	4134362	4134553	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	CDS	4134554	4134780	1	+	1	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	exon	4134554	4134780	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	intron	4134781	4135042	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	CDS	4135043	4135153	0.94	+	2	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	exon	4135043	4135153	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	intron	4135154	4135261	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	CDS	4135262	4135420	0.94	+	2	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	exon	4135262	4135420	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	intron	4135421	4135537	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	CDS	4135538	4135791	0.89	+	2	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	exon	4135538	4135791	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	intron	4135792	4135894	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	CDS	4135895	4136125	0.72	+	0	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	exon	4135895	4136125	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	intron	4136126	4136252	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	CDS	4136253	4136309	0.75	+	0	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	exon	4136253	4136309	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	intron	4136310	4136483	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	CDS	4136484	4136504	0.97	+	0	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	exon	4136484	4136504	.	+	.	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
Ledus.S4	AUGUSTUS	stop_codon	4136505	4136507	.	+	0	transcript_id "Ledus.S4G057200.t2"; gene_id "Ledus.S4G057200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6975.t1 is derived from g6506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	507821	509720	.	-	.	Ledus.C7G003600
Ledus.C7	AUGUSTUS	transcript	507821	509720	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	stop_codon	507818	507820	.	-	0	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	CDS	507821	507871	0.95	-	0	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	exon	507821	507871	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	intron	507872	507979	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	CDS	507980	508051	0.97	-	0	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	exon	507980	508051	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	intron	508052	508132	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	CDS	508133	508214	1	-	1	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	exon	508133	508214	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	intron	508215	508301	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	CDS	508302	508415	1	-	1	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	exon	508302	508415	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	intron	508416	508637	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	CDS	508638	508679	1	-	1	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	exon	508638	508679	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	intron	508680	508891	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	CDS	508892	508941	1	-	0	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	exon	508892	508941	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	intron	508942	509081	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	CDS	509082	509127	1	-	1	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	exon	509082	509127	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	intron	509128	509217	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	CDS	509218	509720	0.73	-	0	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	exon	509218	509720	.	-	.	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
Ledus.C7	AUGUSTUS	start_codon	509718	509720	.	-	0	transcript_id "Ledus.C7G003600.t1"; gene_id "Ledus.C7G003600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4351.t1 is derived from g1787.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16525674	16527688	.	-	.	Ledus.S1G177200
Ledus.S1	AUGUSTUS	transcript	16525674	16527688	.	-	.	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	stop_codon	16525671	16525673	.	-	0	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	CDS	16525674	16525703	0.95	-	0	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	exon	16525674	16525703	.	-	.	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	intron	16525704	16525999	.	-	.	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	CDS	16526000	16526131	0.96	-	0	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	exon	16526000	16526131	.	-	.	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	intron	16526132	16526250	.	-	.	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	CDS	16526251	16526401	0.92	-	1	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	exon	16526251	16526401	.	-	.	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	intron	16526402	16526935	.	-	.	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	CDS	16526936	16526987	0.8	-	2	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	exon	16526936	16526987	.	-	.	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	intron	16526988	16527522	.	-	.	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	CDS	16527523	16527688	0.8	-	0	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	exon	16527523	16527688	.	-	.	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	start_codon	16527686	16527688	.	-	0	transcript_id "Ledus.S1G177200.t1"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	transcript	16525798	16527688	.	-	.	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	stop_codon	16525795	16525797	.	-	0	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	CDS	16525798	16525803	0.77	-	0	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	exon	16525798	16525803	.	-	.	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	intron	16525804	16525999	.	-	.	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	CDS	16526000	16526131	0.98	-	0	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	exon	16526000	16526131	.	-	.	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	intron	16526132	16526250	.	-	.	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	CDS	16526251	16526401	0.89	-	1	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	exon	16526251	16526401	.	-	.	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	intron	16526402	16526935	.	-	.	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	CDS	16526936	16526987	0.75	-	2	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	exon	16526936	16526987	.	-	.	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	intron	16526988	16527522	.	-	.	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	CDS	16527523	16527688	0.77	-	0	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	exon	16527523	16527688	.	-	.	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
Ledus.S1	AUGUSTUS	start_codon	16527686	16527688	.	-	0	transcript_id "Ledus.S1G177200.t2"; gene_id "Ledus.S1G177200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12015.t1 is derived from g5634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8712763	8722367	.	+	.	Ledus.S4G117100
Ledus.S4	AUGUSTUS	transcript	8712763	8722367	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	start_codon	8712763	8712765	.	+	0	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	CDS	8712763	8717178	0.29	+	0	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	exon	8712763	8717178	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	intron	8717179	8717340	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	CDS	8717341	8717481	1	+	0	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	exon	8717341	8717481	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	intron	8717482	8717629	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	CDS	8717630	8719508	0.99	+	0	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	exon	8717630	8719508	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	intron	8719509	8719611	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	CDS	8719612	8719868	0.98	+	2	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	exon	8719612	8719868	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	intron	8719869	8719988	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	CDS	8719989	8721001	0.99	+	0	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	exon	8719989	8721001	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	intron	8721002	8721119	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	CDS	8721120	8722071	0.52	+	1	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	exon	8721120	8722071	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	intron	8722072	8722134	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	CDS	8722135	8722197	0.58	+	0	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	exon	8722135	8722197	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	intron	8722198	8722286	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	CDS	8722287	8722367	0.57	+	0	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	exon	8722287	8722367	.	+	.	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
Ledus.S4	AUGUSTUS	stop_codon	8722368	8722370	.	+	0	transcript_id "Ledus.S4G117100.t1"; gene_id "Ledus.S4G117100"
# This transcript jg10039.t2 is derived from g11069.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10040.t1 is derived from g11070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12136415	12138222	.	+	.	Ledus.S3G151700
Ledus.S3	AUGUSTUS	transcript	12136415	12138222	.	+	.	transcript_id "Ledus.S3G151700.t1"; gene_id "Ledus.S3G151700"
Ledus.S3	AUGUSTUS	start_codon	12136415	12136417	.	+	0	transcript_id "Ledus.S3G151700.t1"; gene_id "Ledus.S3G151700"
Ledus.S3	AUGUSTUS	CDS	12136415	12138112	0.99	+	0	transcript_id "Ledus.S3G151700.t1"; gene_id "Ledus.S3G151700"
Ledus.S3	AUGUSTUS	exon	12136415	12138112	.	+	.	transcript_id "Ledus.S3G151700.t1"; gene_id "Ledus.S3G151700"
Ledus.S3	AUGUSTUS	intron	12138113	12138204	.	+	.	transcript_id "Ledus.S3G151700.t1"; gene_id "Ledus.S3G151700"
Ledus.S3	AUGUSTUS	CDS	12138205	12138222	0.99	+	0	transcript_id "Ledus.S3G151700.t1"; gene_id "Ledus.S3G151700"
Ledus.S3	AUGUSTUS	exon	12138205	12138222	.	+	.	transcript_id "Ledus.S3G151700.t1"; gene_id "Ledus.S3G151700"
Ledus.S3	AUGUSTUS	stop_codon	12138223	12138225	.	+	0	transcript_id "Ledus.S3G151700.t1"; gene_id "Ledus.S3G151700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3468.t1 is derived from g903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8526390	8528276	.	+	.	Ledus.S1G088900
Ledus.S1	AUGUSTUS	transcript	8526390	8528276	.	+	.	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	start_codon	8526390	8526392	.	+	0	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	CDS	8526390	8526493	0.96	+	0	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	exon	8526390	8526493	.	+	.	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	intron	8526494	8526669	.	+	.	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	CDS	8526670	8526678	0.93	+	1	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	exon	8526670	8526678	.	+	.	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	intron	8526679	8527034	.	+	.	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	CDS	8527035	8527104	0.83	+	1	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	exon	8527035	8527104	.	+	.	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	intron	8527105	8527215	.	+	.	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	CDS	8527216	8527500	0.51	+	0	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	exon	8527216	8527500	.	+	.	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	intron	8527501	8527704	.	+	.	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	CDS	8527705	8528064	1	+	0	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	exon	8527705	8528064	.	+	.	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	intron	8528065	8528201	.	+	.	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	CDS	8528202	8528276	1	+	0	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	exon	8528202	8528276	.	+	.	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
Ledus.S1	AUGUSTUS	stop_codon	8528277	8528279	.	+	0	transcript_id "Ledus.S1G088900.t1"; gene_id "Ledus.S1G088900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6112.t1 is derived from g3555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28957579	28959697	.	+	.	Ledus.S1G353300
Ledus.S1	AUGUSTUS	transcript	28957579	28959697	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	start_codon	28957579	28957581	.	+	0	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	CDS	28957579	28957681	0.58	+	0	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	exon	28957579	28957681	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	intron	28957682	28957750	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	CDS	28957751	28958007	0.32	+	2	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	exon	28957751	28958007	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	intron	28958008	28958487	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	CDS	28958488	28958507	0.45	+	0	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	exon	28958488	28958507	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	intron	28958508	28958598	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	CDS	28958599	28958741	1	+	1	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	exon	28958599	28958741	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	intron	28958742	28958903	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	CDS	28958904	28959076	1	+	2	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	exon	28958904	28959076	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	intron	28959077	28959165	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	CDS	28959166	28959367	1	+	0	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	exon	28959166	28959367	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	intron	28959368	28959497	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	CDS	28959498	28959697	0.23	+	2	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	exon	28959498	28959697	.	+	.	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
Ledus.S1	AUGUSTUS	stop_codon	28959698	28959700	.	+	0	transcript_id "Ledus.S1G353300.t1"; gene_id "Ledus.S1G353300"
# This transcript jg6756.t2 is derived from g4199.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6756.t3 is derived from g4199.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6757.t1 is derived from g4200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33786336	33790371	.	+	.	Ledus.S1G417800
Ledus.S1	AUGUSTUS	transcript	33786336	33790371	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	start_codon	33786336	33786338	.	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33786336	33786438	1	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33786336	33786438	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33786439	33786531	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33786532	33786620	1	+	2	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33786532	33786620	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33786621	33786699	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33786700	33786807	1	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33786700	33786807	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33786808	33786896	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33786897	33787004	1	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33786897	33787004	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33787005	33787156	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33787157	33787247	1	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33787157	33787247	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33787248	33787468	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33787469	33787521	1	+	2	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33787469	33787521	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33787522	33787649	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33787650	33787712	0.72	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33787650	33787712	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33787713	33787820	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33787821	33787865	0.71	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33787821	33787865	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33787866	33787985	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33787986	33788021	1	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33787986	33788021	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33788022	33788115	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33788116	33788171	1	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33788116	33788171	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33788172	33788249	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33788250	33788331	1	+	1	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33788250	33788331	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33788332	33788499	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33788500	33788640	1	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33788500	33788640	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33788641	33788830	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33788831	33788957	1	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33788831	33788957	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33788958	33789125	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33789126	33789240	1	+	2	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33789126	33789240	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33789241	33789344	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33789345	33789573	0.93	+	1	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33789345	33789573	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33789574	33789686	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33789687	33789890	1	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33789687	33789890	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33789891	33790063	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33790064	33790149	1	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33790064	33790149	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	intron	33790150	33790274	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	CDS	33790275	33790371	1	+	1	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	exon	33790275	33790371	.	+	.	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
Ledus.S1	AUGUSTUS	stop_codon	33790372	33790374	.	+	0	transcript_id "Ledus.S1G417800.t1"; gene_id "Ledus.S1G417800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1879.t1 is derived from g8742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13151242	13155530	.	+	.	Ledus.S2G176100
Ledus.S2	AUGUSTUS	transcript	13151242	13155530	.	+	.	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	start_codon	13151242	13151244	.	+	0	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	CDS	13151242	13151337	0.29	+	0	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	exon	13151242	13151337	.	+	.	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	intron	13151338	13151411	.	+	.	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	CDS	13151412	13151524	1	+	0	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	exon	13151412	13151524	.	+	.	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	intron	13151525	13151612	.	+	.	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	CDS	13151613	13151679	1	+	1	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	exon	13151613	13151679	.	+	.	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	intron	13151680	13154279	.	+	.	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	CDS	13154280	13154381	1	+	0	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	exon	13154280	13154381	.	+	.	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	intron	13154382	13155500	.	+	.	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	CDS	13155501	13155530	0.09	+	0	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	exon	13155501	13155530	.	+	.	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
Ledus.S2	AUGUSTUS	stop_codon	13155531	13155533	.	+	0	transcript_id "Ledus.S2G176100.t1"; gene_id "Ledus.S2G176100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10573.t1 is derived from g11603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16220300	16220919	.	+	.	Ledus.S3G205000
Ledus.S3	AUGUSTUS	transcript	16220300	16220919	.	+	.	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	start_codon	16220300	16220302	.	+	0	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	CDS	16220300	16220302	0.79	+	0	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	exon	16220300	16220302	.	+	.	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	intron	16220303	16220460	.	+	.	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	CDS	16220461	16220553	1	+	0	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	exon	16220461	16220553	.	+	.	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	intron	16220554	16220641	.	+	.	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	CDS	16220642	16220809	1	+	0	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	exon	16220642	16220809	.	+	.	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	intron	16220810	16220886	.	+	.	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	CDS	16220887	16220919	1	+	0	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	exon	16220887	16220919	.	+	.	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
Ledus.S3	AUGUSTUS	stop_codon	16220920	16220922	.	+	0	transcript_id "Ledus.S3G205000.t1"; gene_id "Ledus.S3G205000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12163.t1 is derived from g5782.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10059886	10061685	.	-	.	Ledus.S4G131900
Ledus.S4	AUGUSTUS	transcript	10059886	10061685	.	-	.	transcript_id "Ledus.S4G131900.t1"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	stop_codon	10059883	10059885	.	-	0	transcript_id "Ledus.S4G131900.t1"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	CDS	10059886	10060149	1	-	0	transcript_id "Ledus.S4G131900.t1"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	exon	10059886	10060149	.	-	.	transcript_id "Ledus.S4G131900.t1"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	intron	10060150	10060587	.	-	.	transcript_id "Ledus.S4G131900.t1"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	CDS	10060588	10061211	1	-	0	transcript_id "Ledus.S4G131900.t1"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	exon	10060588	10061211	.	-	.	transcript_id "Ledus.S4G131900.t1"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	intron	10061212	10061310	.	-	.	transcript_id "Ledus.S4G131900.t1"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	CDS	10061311	10061685	1	-	0	transcript_id "Ledus.S4G131900.t1"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	exon	10061311	10061685	.	-	.	transcript_id "Ledus.S4G131900.t1"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	start_codon	10061683	10061685	.	-	0	transcript_id "Ledus.S4G131900.t1"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	transcript	10059886	10061685	.	-	.	transcript_id "Ledus.S4G131900.t2"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	stop_codon	10059883	10059885	.	-	0	transcript_id "Ledus.S4G131900.t2"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	CDS	10059886	10060149	0.99	-	0	transcript_id "Ledus.S4G131900.t2"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	exon	10059886	10060149	.	-	.	transcript_id "Ledus.S4G131900.t2"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	intron	10060150	10060380	.	-	.	transcript_id "Ledus.S4G131900.t2"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	CDS	10060381	10061211	0.99	-	0	transcript_id "Ledus.S4G131900.t2"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	exon	10060381	10061211	.	-	.	transcript_id "Ledus.S4G131900.t2"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	intron	10061212	10061310	.	-	.	transcript_id "Ledus.S4G131900.t2"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	CDS	10061311	10061685	0.96	-	0	transcript_id "Ledus.S4G131900.t2"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	exon	10061311	10061685	.	-	.	transcript_id "Ledus.S4G131900.t2"; gene_id "Ledus.S4G131900"
Ledus.S4	AUGUSTUS	start_codon	10061683	10061685	.	-	0	transcript_id "Ledus.S4G131900.t2"; gene_id "Ledus.S4G131900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2796.t1 is derived from g230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3826687	3829425	.	+	.	Ledus.S1G021700
Ledus.S1	AUGUSTUS	transcript	3826687	3829425	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	start_codon	3826687	3826689	.	+	0	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3826687	3827554	1	+	0	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3826687	3827554	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	intron	3827555	3827647	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3827648	3827820	1	+	2	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3827648	3827820	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	intron	3827821	3827957	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3827958	3828029	1	+	0	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3827958	3828029	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	intron	3828030	3828114	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3828115	3828219	1	+	0	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3828115	3828219	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	intron	3828220	3828453	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3828454	3828732	1	+	0	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3828454	3828732	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	intron	3828733	3828821	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3828822	3829034	1	+	0	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3828822	3829034	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	intron	3829035	3829176	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3829177	3829425	1	+	0	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3829177	3829425	.	+	.	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	stop_codon	3829426	3829428	.	+	0	transcript_id "Ledus.S1G021700.t1"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	transcript	3826687	3829425	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	start_codon	3826687	3826689	.	+	0	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3826687	3827554	1	+	0	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3826687	3827554	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	intron	3827555	3827647	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3827648	3827820	1	+	2	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3827648	3827820	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	intron	3827821	3827957	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3827958	3828029	1	+	0	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3827958	3828029	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	intron	3828030	3828114	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3828115	3828219	1	+	0	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3828115	3828219	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	intron	3828220	3828453	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3828454	3828732	1	+	0	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3828454	3828732	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	intron	3828733	3828821	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3828822	3829034	1	+	0	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3828822	3829034	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	intron	3829035	3829191	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	CDS	3829192	3829425	1	+	0	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	exon	3829192	3829425	.	+	.	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
Ledus.S1	AUGUSTUS	stop_codon	3829426	3829428	.	+	0	transcript_id "Ledus.S1G021700.t2"; gene_id "Ledus.S1G021700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg749.t1 is derived from g7610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4809758	4813333	.	+	.	Ledus.S2G063100
Ledus.S2	AUGUSTUS	transcript	4809758	4813333	.	+	.	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	start_codon	4809758	4809760	.	+	0	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	CDS	4809758	4811320	1	+	0	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	exon	4809758	4811320	.	+	.	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	intron	4811321	4811466	.	+	.	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	CDS	4811467	4811740	1	+	0	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	exon	4811467	4811740	.	+	.	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	intron	4811741	4811942	.	+	.	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	CDS	4811943	4812078	1	+	2	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	exon	4811943	4812078	.	+	.	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	intron	4812079	4812198	.	+	.	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	CDS	4812199	4812409	1	+	1	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	exon	4812199	4812409	.	+	.	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	intron	4812410	4812644	.	+	.	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	CDS	4812645	4812851	0.99	+	0	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	exon	4812645	4812851	.	+	.	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	intron	4812852	4812946	.	+	.	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	CDS	4812947	4813333	0.99	+	0	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	exon	4812947	4813333	.	+	.	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
Ledus.S2	AUGUSTUS	stop_codon	4813334	4813336	.	+	0	transcript_id "Ledus.S2G063100.t1"; gene_id "Ledus.S2G063100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6173.t1 is derived from g3616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29390648	29392623	.	-	.	Ledus.S1G359400
Ledus.S1	AUGUSTUS	transcript	29390648	29392623	.	-	.	transcript_id "Ledus.S1G359400.t1"; gene_id "Ledus.S1G359400"
Ledus.S1	AUGUSTUS	stop_codon	29390645	29390647	.	-	0	transcript_id "Ledus.S1G359400.t1"; gene_id "Ledus.S1G359400"
Ledus.S1	AUGUSTUS	CDS	29390648	29391358	1	-	0	transcript_id "Ledus.S1G359400.t1"; gene_id "Ledus.S1G359400"
Ledus.S1	AUGUSTUS	exon	29390648	29391358	.	-	.	transcript_id "Ledus.S1G359400.t1"; gene_id "Ledus.S1G359400"
Ledus.S1	AUGUSTUS	intron	29391359	29391449	.	-	.	transcript_id "Ledus.S1G359400.t1"; gene_id "Ledus.S1G359400"
Ledus.S1	AUGUSTUS	CDS	29391450	29392524	0.74	-	1	transcript_id "Ledus.S1G359400.t1"; gene_id "Ledus.S1G359400"
Ledus.S1	AUGUSTUS	exon	29391450	29392524	.	-	.	transcript_id "Ledus.S1G359400.t1"; gene_id "Ledus.S1G359400"
Ledus.S1	AUGUSTUS	intron	29392525	29392606	.	-	.	transcript_id "Ledus.S1G359400.t1"; gene_id "Ledus.S1G359400"
Ledus.S1	AUGUSTUS	CDS	29392607	29392623	0.69	-	0	transcript_id "Ledus.S1G359400.t1"; gene_id "Ledus.S1G359400"
Ledus.S1	AUGUSTUS	exon	29392607	29392623	.	-	.	transcript_id "Ledus.S1G359400.t1"; gene_id "Ledus.S1G359400"
Ledus.S1	AUGUSTUS	start_codon	29392621	29392623	.	-	0	transcript_id "Ledus.S1G359400.t1"; gene_id "Ledus.S1G359400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3941.t1 is derived from g1377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13661003	13661645	.	+	.	Ledus.S1G136200
Ledus.S1	AUGUSTUS	transcript	13661003	13661645	.	+	.	transcript_id "Ledus.S1G136200.t1"; gene_id "Ledus.S1G136200"
Ledus.S1	AUGUSTUS	start_codon	13661003	13661005	.	+	0	transcript_id "Ledus.S1G136200.t1"; gene_id "Ledus.S1G136200"
Ledus.S1	AUGUSTUS	CDS	13661003	13661140	0.86	+	0	transcript_id "Ledus.S1G136200.t1"; gene_id "Ledus.S1G136200"
Ledus.S1	AUGUSTUS	exon	13661003	13661140	.	+	.	transcript_id "Ledus.S1G136200.t1"; gene_id "Ledus.S1G136200"
Ledus.S1	AUGUSTUS	intron	13661141	13661292	.	+	.	transcript_id "Ledus.S1G136200.t1"; gene_id "Ledus.S1G136200"
Ledus.S1	AUGUSTUS	CDS	13661293	13661392	0.97	+	0	transcript_id "Ledus.S1G136200.t1"; gene_id "Ledus.S1G136200"
Ledus.S1	AUGUSTUS	exon	13661293	13661392	.	+	.	transcript_id "Ledus.S1G136200.t1"; gene_id "Ledus.S1G136200"
Ledus.S1	AUGUSTUS	intron	13661393	13661544	.	+	.	transcript_id "Ledus.S1G136200.t1"; gene_id "Ledus.S1G136200"
Ledus.S1	AUGUSTUS	CDS	13661545	13661645	0.94	+	2	transcript_id "Ledus.S1G136200.t1"; gene_id "Ledus.S1G136200"
Ledus.S1	AUGUSTUS	exon	13661545	13661645	.	+	.	transcript_id "Ledus.S1G136200.t1"; gene_id "Ledus.S1G136200"
Ledus.S1	AUGUSTUS	stop_codon	13661646	13661648	.	+	0	transcript_id "Ledus.S1G136200.t1"; gene_id "Ledus.S1G136200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6843.t1 is derived from g4287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34603449	34604592	.	-	.	Ledus.S1G426400
Ledus.S1	AUGUSTUS	transcript	34603449	34604592	.	-	.	transcript_id "Ledus.S1G426400.t1"; gene_id "Ledus.S1G426400"
Ledus.S1	AUGUSTUS	stop_codon	34603446	34603448	.	-	0	transcript_id "Ledus.S1G426400.t1"; gene_id "Ledus.S1G426400"
Ledus.S1	AUGUSTUS	CDS	34603449	34603862	0.15	-	0	transcript_id "Ledus.S1G426400.t1"; gene_id "Ledus.S1G426400"
Ledus.S1	AUGUSTUS	exon	34603449	34603862	.	-	.	transcript_id "Ledus.S1G426400.t1"; gene_id "Ledus.S1G426400"
Ledus.S1	AUGUSTUS	intron	34603863	34604481	.	-	.	transcript_id "Ledus.S1G426400.t1"; gene_id "Ledus.S1G426400"
Ledus.S1	AUGUSTUS	CDS	34604482	34604592	0.01	-	0	transcript_id "Ledus.S1G426400.t1"; gene_id "Ledus.S1G426400"
Ledus.S1	AUGUSTUS	exon	34604482	34604592	.	-	.	transcript_id "Ledus.S1G426400.t1"; gene_id "Ledus.S1G426400"
Ledus.S1	AUGUSTUS	start_codon	34604590	34604592	.	-	0	transcript_id "Ledus.S1G426400.t1"; gene_id "Ledus.S1G426400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2746.t1 is derived from g180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2955310	2955585	.	+	.	Ledus.S1G016700
Ledus.S1	AUGUSTUS	transcript	2955310	2955585	.	+	.	transcript_id "Ledus.S1G016700.t1"; gene_id "Ledus.S1G016700"
Ledus.S1	AUGUSTUS	start_codon	2955310	2955312	.	+	0	transcript_id "Ledus.S1G016700.t1"; gene_id "Ledus.S1G016700"
Ledus.S1	AUGUSTUS	CDS	2955310	2955585	0.96	+	0	transcript_id "Ledus.S1G016700.t1"; gene_id "Ledus.S1G016700"
Ledus.S1	AUGUSTUS	exon	2955310	2955585	.	+	.	transcript_id "Ledus.S1G016700.t1"; gene_id "Ledus.S1G016700"
Ledus.S1	AUGUSTUS	stop_codon	2955586	2955588	.	+	0	transcript_id "Ledus.S1G016700.t1"; gene_id "Ledus.S1G016700"
# This transcript jg9748.t2 is derived from g10778.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9749.t1 is derived from g10779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9567227	9570771	.	+	.	Ledus.S3G122600
Ledus.S3	AUGUSTUS	transcript	9567227	9570771	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	start_codon	9567227	9567229	.	+	0	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	CDS	9567227	9567304	0.96	+	0	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	exon	9567227	9567304	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	intron	9567305	9567508	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	CDS	9567509	9567602	1	+	0	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	exon	9567509	9567602	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	intron	9567603	9567694	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	CDS	9567695	9567799	1	+	2	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	exon	9567695	9567799	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	intron	9567800	9567934	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	CDS	9567935	9568018	1	+	2	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	exon	9567935	9568018	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	intron	9568019	9568300	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	CDS	9568301	9568374	1	+	2	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	exon	9568301	9568374	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	intron	9568375	9569235	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	CDS	9569236	9569300	1	+	0	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	exon	9569236	9569300	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	intron	9569301	9569597	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	CDS	9569598	9569661	1	+	1	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	exon	9569598	9569661	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	intron	9569662	9569742	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	CDS	9569743	9569808	1	+	0	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	exon	9569743	9569808	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	intron	9569809	9569901	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	CDS	9569902	9569958	1	+	0	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	exon	9569902	9569958	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	intron	9569959	9570049	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	CDS	9570050	9570094	1	+	0	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	exon	9570050	9570094	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	intron	9570095	9570363	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	CDS	9570364	9570417	1	+	0	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	exon	9570364	9570417	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	intron	9570418	9570591	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	CDS	9570592	9570771	1	+	0	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	exon	9570592	9570771	.	+	.	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
Ledus.S3	AUGUSTUS	stop_codon	9570772	9570774	.	+	0	transcript_id "Ledus.S3G122600.t1"; gene_id "Ledus.S3G122600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9059.t1 is derived from g10089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4294225	4296462	.	-	.	Ledus.S3G053600
Ledus.S3	AUGUSTUS	transcript	4294225	4296462	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	stop_codon	4294222	4294224	.	-	0	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	CDS	4294225	4294311	0.9	-	0	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	exon	4294225	4294311	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	intron	4294312	4294411	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	CDS	4294412	4294490	1	-	1	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	exon	4294412	4294490	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	intron	4294491	4294572	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	CDS	4294573	4294661	1	-	0	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	exon	4294573	4294661	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	intron	4294662	4294771	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	CDS	4294772	4294816	1	-	0	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	exon	4294772	4294816	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	intron	4294817	4295047	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	CDS	4295048	4295154	1	-	2	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	exon	4295048	4295154	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	intron	4295155	4295408	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	CDS	4295409	4295465	0.98	-	2	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	exon	4295409	4295465	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	intron	4295466	4295592	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	CDS	4295593	4295656	0.97	-	0	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	exon	4295593	4295656	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	intron	4295657	4295739	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	CDS	4295740	4295793	1	-	0	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	exon	4295740	4295793	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	intron	4295794	4295936	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	CDS	4295937	4295997	0.95	-	1	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	exon	4295937	4295997	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	intron	4295998	4296123	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	CDS	4296124	4296221	0.72	-	0	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	exon	4296124	4296221	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	intron	4296222	4296301	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	CDS	4296302	4296323	0.86	-	1	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	exon	4296302	4296323	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	intron	4296324	4296400	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	CDS	4296401	4296462	0.91	-	0	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	exon	4296401	4296462	.	-	.	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
Ledus.S3	AUGUSTUS	start_codon	4296460	4296462	.	-	0	transcript_id "Ledus.S3G053600.t1"; gene_id "Ledus.S3G053600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2403.t1 is derived from g9266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17897972	17900343	.	+	.	Ledus.S2G228500
Ledus.S2	AUGUSTUS	transcript	17897972	17900343	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	start_codon	17897972	17897974	.	+	0	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17897972	17898207	0.96	+	0	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17897972	17898207	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17898208	17898292	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17898293	17898427	1	+	1	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17898293	17898427	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17898428	17898526	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17898527	17898778	0.99	+	1	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17898527	17898778	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17898779	17898879	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17898880	17898961	1	+	1	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17898880	17898961	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17898962	17899058	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17899059	17899174	1	+	0	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17899059	17899174	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17899175	17899334	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17899335	17899389	1	+	1	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17899335	17899389	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17899390	17899600	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17899601	17899712	1	+	0	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17899601	17899712	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17899713	17899829	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17899830	17899999	1	+	2	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17899830	17899999	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17900000	17900082	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17900083	17900343	0.92	+	0	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17900083	17900343	.	+	.	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	stop_codon	17900344	17900346	.	+	0	transcript_id "Ledus.S2G228500.t1"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	transcript	17897972	17900343	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	start_codon	17897972	17897974	.	+	0	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17897972	17898207	0.89	+	0	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17897972	17898207	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17898208	17898292	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17898293	17898427	1	+	1	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17898293	17898427	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17898428	17898526	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17898527	17898778	0.98	+	1	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17898527	17898778	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17898779	17898879	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17898880	17898961	1	+	1	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17898880	17898961	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17898962	17899058	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17899059	17899174	1	+	0	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17899059	17899174	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17899175	17899334	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17899335	17899417	0.24	+	1	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17899335	17899417	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17899418	17899502	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17899503	17899560	0.26	+	2	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17899503	17899560	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17899561	17899640	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17899641	17899651	0.35	+	1	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17899641	17899651	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17899652	17899829	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17899830	17899999	1	+	2	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17899830	17899999	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	intron	17900000	17900082	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	CDS	17900083	17900343	0.91	+	0	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	exon	17900083	17900343	.	+	.	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
Ledus.S2	AUGUSTUS	stop_codon	17900344	17900346	.	+	0	transcript_id "Ledus.S2G228500.t2"; gene_id "Ledus.S2G228500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9585.t1 is derived from g10615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8100098	8101899	.	+	.	Ledus.S3G106200
Ledus.S3	AUGUSTUS	transcript	8100098	8101899	.	+	.	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	start_codon	8100098	8100100	.	+	0	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	CDS	8100098	8100477	0.88	+	0	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	exon	8100098	8100477	.	+	.	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	intron	8100478	8100548	.	+	.	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	CDS	8100549	8100768	0.96	+	1	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	exon	8100549	8100768	.	+	.	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	intron	8100769	8100849	.	+	.	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	CDS	8100850	8101137	0.99	+	0	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	exon	8100850	8101137	.	+	.	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	intron	8101138	8101217	.	+	.	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	CDS	8101218	8101573	0.73	+	0	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	exon	8101218	8101573	.	+	.	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	intron	8101574	8101649	.	+	.	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	CDS	8101650	8101899	1	+	1	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	exon	8101650	8101899	.	+	.	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
Ledus.S3	AUGUSTUS	stop_codon	8101900	8101902	.	+	0	transcript_id "Ledus.S3G106200.t1"; gene_id "Ledus.S3G106200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5159.t1 is derived from g2598.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22028055	22028327	.	-	.	Ledus.S1G258000
Ledus.S1	AUGUSTUS	transcript	22028055	22028327	.	-	.	transcript_id "Ledus.S1G258000.t1"; gene_id "Ledus.S1G258000"
Ledus.S1	AUGUSTUS	stop_codon	22028052	22028054	.	-	0	transcript_id "Ledus.S1G258000.t1"; gene_id "Ledus.S1G258000"
Ledus.S1	AUGUSTUS	CDS	22028055	22028327	0.99	-	0	transcript_id "Ledus.S1G258000.t1"; gene_id "Ledus.S1G258000"
Ledus.S1	AUGUSTUS	exon	22028055	22028327	.	-	.	transcript_id "Ledus.S1G258000.t1"; gene_id "Ledus.S1G258000"
Ledus.S1	AUGUSTUS	start_codon	22028325	22028327	.	-	0	transcript_id "Ledus.S1G258000.t1"; gene_id "Ledus.S1G258000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6796.t1 is derived from g4240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34247076	34252775	.	+	.	Ledus.S1G421700
Ledus.S1	AUGUSTUS	transcript	34247076	34252775	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	start_codon	34247076	34247078	.	+	0	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34247076	34247257	1	+	0	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34247076	34247257	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34247258	34247412	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34247413	34247481	1	+	1	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34247413	34247481	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34247482	34247665	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34247666	34247754	1	+	1	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34247666	34247754	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34247755	34247900	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34247901	34248013	1	+	2	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34247901	34248013	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34248014	34248158	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34248159	34248260	1	+	0	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34248159	34248260	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34248261	34248394	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34248395	34248473	1	+	0	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34248395	34248473	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34248474	34248853	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34248854	34249453	1	+	2	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34248854	34249453	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34249454	34249645	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34249646	34250195	0.61	+	2	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34249646	34250195	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34250196	34250320	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34250321	34250400	1	+	1	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34250321	34250400	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34250401	34250526	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34250527	34250609	1	+	2	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34250527	34250609	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34250610	34250703	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34250704	34250940	0.98	+	0	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34250704	34250940	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34250941	34251037	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34251038	34251203	1	+	0	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34251038	34251203	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34251204	34251362	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34251363	34251677	0.79	+	2	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34251363	34251677	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34251678	34251750	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34251751	34251836	0.98	+	2	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34251751	34251836	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34251837	34251957	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34251958	34252134	0.97	+	0	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34251958	34252134	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34252135	34252231	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34252232	34252540	0.92	+	0	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34252232	34252540	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	intron	34252541	34252622	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	CDS	34252623	34252775	0.93	+	0	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	exon	34252623	34252775	.	+	.	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
Ledus.S1	AUGUSTUS	stop_codon	34252776	34252778	.	+	0	transcript_id "Ledus.S1G421700.t1"; gene_id "Ledus.S1G421700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2379.t1 is derived from g9242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17744597	17747248	.	-	.	Ledus.S2G226100
Ledus.S2	AUGUSTUS	transcript	17744597	17747248	.	-	.	transcript_id "Ledus.S2G226100.t1"; gene_id "Ledus.S2G226100"
Ledus.S2	AUGUSTUS	stop_codon	17744594	17744596	.	-	0	transcript_id "Ledus.S2G226100.t1"; gene_id "Ledus.S2G226100"
Ledus.S2	AUGUSTUS	CDS	17744597	17747248	1	-	0	transcript_id "Ledus.S2G226100.t1"; gene_id "Ledus.S2G226100"
Ledus.S2	AUGUSTUS	exon	17744597	17747248	.	-	.	transcript_id "Ledus.S2G226100.t1"; gene_id "Ledus.S2G226100"
Ledus.S2	AUGUSTUS	start_codon	17747246	17747248	.	-	0	transcript_id "Ledus.S2G226100.t1"; gene_id "Ledus.S2G226100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11430.t1 is derived from g5048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4246190	4248970	.	+	.	Ledus.S4G058600
Ledus.S4	AUGUSTUS	transcript	4246190	4248970	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	start_codon	4246190	4246192	.	+	0	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	CDS	4246190	4246300	1	+	0	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	exon	4246190	4246300	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	intron	4246301	4246382	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	CDS	4246383	4246532	1	+	0	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	exon	4246383	4246532	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	intron	4246533	4246631	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	CDS	4246632	4246723	1	+	0	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	exon	4246632	4246723	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	intron	4246724	4246820	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	CDS	4246821	4247007	1	+	1	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	exon	4246821	4247007	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	intron	4247008	4247148	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	CDS	4247149	4247304	1	+	0	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	exon	4247149	4247304	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	intron	4247305	4247389	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	CDS	4247390	4247441	0.93	+	0	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	exon	4247390	4247441	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	intron	4247442	4247645	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	CDS	4247646	4248970	0.87	+	2	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	exon	4247646	4248970	.	+	.	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
Ledus.S4	AUGUSTUS	stop_codon	4248971	4248973	.	+	0	transcript_id "Ledus.S4G058600.t1"; gene_id "Ledus.S4G058600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4995.t1 is derived from g2433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21068754	21070514	.	+	.	Ledus.S1G241600
Ledus.S1	AUGUSTUS	transcript	21068754	21070514	.	+	.	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	start_codon	21068754	21068756	.	+	0	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	CDS	21068754	21068879	1	+	0	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	exon	21068754	21068879	.	+	.	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	intron	21068880	21069046	.	+	.	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	CDS	21069047	21069154	1	+	0	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	exon	21069047	21069154	.	+	.	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	intron	21069155	21069252	.	+	.	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	CDS	21069253	21069318	1	+	0	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	exon	21069253	21069318	.	+	.	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	intron	21069319	21069409	.	+	.	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	CDS	21069410	21070009	0.94	+	0	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	exon	21069410	21070009	.	+	.	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	intron	21070010	21070115	.	+	.	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	CDS	21070116	21070187	1	+	0	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	exon	21070116	21070187	.	+	.	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	intron	21070188	21070283	.	+	.	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	CDS	21070284	21070514	1	+	0	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	exon	21070284	21070514	.	+	.	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
Ledus.S1	AUGUSTUS	stop_codon	21070515	21070517	.	+	0	transcript_id "Ledus.S1G241600.t1"; gene_id "Ledus.S1G241600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1782.t1 is derived from g8645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12515279	12516195	.	+	.	Ledus.S2G166400
Ledus.S2	AUGUSTUS	transcript	12515279	12516195	.	+	.	transcript_id "Ledus.S2G166400.t1"; gene_id "Ledus.S2G166400"
Ledus.S2	AUGUSTUS	start_codon	12515279	12515281	.	+	0	transcript_id "Ledus.S2G166400.t1"; gene_id "Ledus.S2G166400"
Ledus.S2	AUGUSTUS	CDS	12515279	12515776	1	+	0	transcript_id "Ledus.S2G166400.t1"; gene_id "Ledus.S2G166400"
Ledus.S2	AUGUSTUS	exon	12515279	12515776	.	+	.	transcript_id "Ledus.S2G166400.t1"; gene_id "Ledus.S2G166400"
Ledus.S2	AUGUSTUS	intron	12515777	12515883	.	+	.	transcript_id "Ledus.S2G166400.t1"; gene_id "Ledus.S2G166400"
Ledus.S2	AUGUSTUS	CDS	12515884	12516195	0.94	+	0	transcript_id "Ledus.S2G166400.t1"; gene_id "Ledus.S2G166400"
Ledus.S2	AUGUSTUS	exon	12515884	12516195	.	+	.	transcript_id "Ledus.S2G166400.t1"; gene_id "Ledus.S2G166400"
Ledus.S2	AUGUSTUS	stop_codon	12516196	12516198	.	+	0	transcript_id "Ledus.S2G166400.t1"; gene_id "Ledus.S2G166400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9693.t1 is derived from g10723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9062453	9063157	.	+	.	Ledus.S3G117000
Ledus.S3	AUGUSTUS	transcript	9062453	9063157	.	+	.	transcript_id "Ledus.S3G117000.t1"; gene_id "Ledus.S3G117000"
Ledus.S3	AUGUSTUS	start_codon	9062453	9062455	.	+	0	transcript_id "Ledus.S3G117000.t1"; gene_id "Ledus.S3G117000"
Ledus.S3	AUGUSTUS	CDS	9062453	9062826	0.85	+	0	transcript_id "Ledus.S3G117000.t1"; gene_id "Ledus.S3G117000"
Ledus.S3	AUGUSTUS	exon	9062453	9062826	.	+	.	transcript_id "Ledus.S3G117000.t1"; gene_id "Ledus.S3G117000"
Ledus.S3	AUGUSTUS	intron	9062827	9062919	.	+	.	transcript_id "Ledus.S3G117000.t1"; gene_id "Ledus.S3G117000"
Ledus.S3	AUGUSTUS	CDS	9062920	9063157	1	+	1	transcript_id "Ledus.S3G117000.t1"; gene_id "Ledus.S3G117000"
Ledus.S3	AUGUSTUS	exon	9062920	9063157	.	+	.	transcript_id "Ledus.S3G117000.t1"; gene_id "Ledus.S3G117000"
Ledus.S3	AUGUSTUS	stop_codon	9063158	9063160	.	+	0	transcript_id "Ledus.S3G117000.t1"; gene_id "Ledus.S3G117000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12128.t1 is derived from g5747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9673630	9675895	.	-	.	Ledus.S4G128400
Ledus.S4	AUGUSTUS	transcript	9673630	9675895	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	stop_codon	9673627	9673629	.	-	0	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	CDS	9673630	9673773	0.54	-	0	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	exon	9673630	9673773	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	intron	9673774	9673869	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	CDS	9673870	9674005	1	-	1	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	exon	9673870	9674005	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	intron	9674006	9674202	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	CDS	9674203	9674259	1	-	1	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	exon	9674203	9674259	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	intron	9674260	9674371	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	CDS	9674372	9674564	1	-	2	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	exon	9674372	9674564	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	intron	9674565	9674728	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	CDS	9674729	9675060	1	-	1	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	exon	9674729	9675060	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	intron	9675061	9675156	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	CDS	9675157	9675694	0.98	-	2	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	exon	9675157	9675694	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	intron	9675695	9675795	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	CDS	9675796	9675895	0.76	-	0	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	exon	9675796	9675895	.	-	.	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
Ledus.S4	AUGUSTUS	start_codon	9675893	9675895	.	-	0	transcript_id "Ledus.S4G128400.t1"; gene_id "Ledus.S4G128400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13016.t1 is derived from g6826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3061192	3061491	.	-	.	Ledus.S6G007800
Ledus.S6	AUGUSTUS	transcript	3061192	3061491	.	-	.	transcript_id "Ledus.S6G007800.t1"; gene_id "Ledus.S6G007800"
Ledus.S6	AUGUSTUS	stop_codon	3061189	3061191	.	-	0	transcript_id "Ledus.S6G007800.t1"; gene_id "Ledus.S6G007800"
Ledus.S6	AUGUSTUS	CDS	3061192	3061491	0.97	-	0	transcript_id "Ledus.S6G007800.t1"; gene_id "Ledus.S6G007800"
Ledus.S6	AUGUSTUS	exon	3061192	3061491	.	-	.	transcript_id "Ledus.S6G007800.t1"; gene_id "Ledus.S6G007800"
Ledus.S6	AUGUSTUS	start_codon	3061489	3061491	.	-	0	transcript_id "Ledus.S6G007800.t1"; gene_id "Ledus.S6G007800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5231.t1 is derived from g2670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22611537	22614389	.	+	.	Ledus.S1G265200
Ledus.S1	AUGUSTUS	transcript	22611537	22614389	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	start_codon	22611537	22611539	.	+	0	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22611537	22611669	0.99	+	0	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22611537	22611669	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	intron	22611670	22611931	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22611932	22612161	1	+	2	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22611932	22612161	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	intron	22612162	22612258	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22612259	22612391	1	+	0	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22612259	22612391	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	intron	22612392	22612529	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22612530	22612686	0.99	+	2	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22612530	22612686	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	intron	22612687	22612820	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22612821	22612899	0.95	+	1	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22612821	22612899	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	intron	22612900	22613000	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22613001	22613160	0.79	+	0	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22613001	22613160	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	intron	22613161	22613281	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22613282	22613373	0.94	+	2	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22613282	22613373	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	intron	22613374	22613464	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22613465	22613558	0.51	+	0	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22613465	22613558	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	intron	22613559	22613680	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22613681	22613687	0.9	+	2	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22613681	22613687	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	intron	22613688	22613770	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22613771	22613805	0.88	+	1	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22613771	22613805	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	intron	22613806	22613875	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22613876	22613909	0.6	+	2	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22613876	22613909	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	intron	22613910	22613994	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22613995	22614054	0.8	+	1	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22613995	22614054	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	intron	22614055	22614181	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	CDS	22614182	22614389	0.73	+	1	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	exon	22614182	22614389	.	+	.	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
Ledus.S1	AUGUSTUS	stop_codon	22614390	22614392	.	+	0	transcript_id "Ledus.S1G265200.t1"; gene_id "Ledus.S1G265200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2186.t1 is derived from g9049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15823677	15826278	.	+	.	Ledus.S2G206800
Ledus.S2	AUGUSTUS	transcript	15823677	15826278	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	start_codon	15823677	15823679	.	+	0	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	CDS	15823677	15823907	0.77	+	0	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	exon	15823677	15823907	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	intron	15823908	15824039	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	CDS	15824040	15824201	1	+	0	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	exon	15824040	15824201	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	intron	15824202	15824293	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	CDS	15824294	15824509	1	+	0	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	exon	15824294	15824509	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	intron	15824510	15824601	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	CDS	15824602	15824784	1	+	0	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	exon	15824602	15824784	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	intron	15824785	15824933	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	CDS	15824934	15825155	1	+	0	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	exon	15824934	15825155	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	intron	15825156	15825285	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	CDS	15825286	15825402	1	+	0	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	exon	15825286	15825402	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	intron	15825403	15825501	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	CDS	15825502	15825645	1	+	0	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	exon	15825502	15825645	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	intron	15825646	15825744	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	CDS	15825745	15825846	1	+	0	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	exon	15825745	15825846	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	intron	15825847	15825931	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	CDS	15825932	15826000	1	+	0	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	exon	15825932	15826000	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	intron	15826001	15826086	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	CDS	15826087	15826278	0.92	+	0	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	exon	15826087	15826278	.	+	.	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
Ledus.S2	AUGUSTUS	stop_codon	15826279	15826281	.	+	0	transcript_id "Ledus.S2G206800.t1"; gene_id "Ledus.S2G206800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4839.t1 is derived from g2277.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20078353	20080137	.	+	.	Ledus.S1G226000
Ledus.S1	AUGUSTUS	transcript	20078353	20080137	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	start_codon	20078353	20078355	.	+	0	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20078353	20078439	1	+	0	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20078353	20078439	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20078440	20078511	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20078512	20078620	1	+	0	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20078512	20078620	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20078621	20078703	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20078704	20078751	1	+	2	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20078704	20078751	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20078752	20078839	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20078840	20079025	1	+	2	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20078840	20079025	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20079026	20079177	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20079178	20079274	1	+	2	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20079178	20079274	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20079275	20079353	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20079354	20079376	0.83	+	1	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20079354	20079376	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20079377	20079467	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20079468	20079607	0.78	+	2	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20079468	20079607	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20079608	20079684	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20079685	20079934	1	+	0	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20079685	20079934	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20079935	20080006	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20080007	20080137	1	+	2	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20080007	20080137	.	+	.	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	stop_codon	20080138	20080140	.	+	0	transcript_id "Ledus.S1G226000.t1"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	transcript	20078684	20080137	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	start_codon	20078684	20078686	.	+	0	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20078684	20078751	0.46	+	0	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20078684	20078751	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20078752	20078843	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20078844	20079025	0.99	+	1	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20078844	20079025	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20079026	20079177	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20079178	20079274	1	+	2	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20079178	20079274	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20079275	20079353	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20079354	20079376	0.84	+	1	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20079354	20079376	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20079377	20079467	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20079468	20079607	0.8	+	2	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20079468	20079607	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20079608	20079684	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20079685	20079934	1	+	0	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20079685	20079934	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	intron	20079935	20080006	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	CDS	20080007	20080137	1	+	2	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	exon	20080007	20080137	.	+	.	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
Ledus.S1	AUGUSTUS	stop_codon	20080138	20080140	.	+	0	transcript_id "Ledus.S1G226000.t2"; gene_id "Ledus.S1G226000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9555.t1 is derived from g10585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7764724	7765588	.	+	.	Ledus.S3G103200
Ledus.S3	AUGUSTUS	transcript	7764724	7765588	.	+	.	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	start_codon	7764724	7764726	.	+	0	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	CDS	7764724	7764771	0.77	+	0	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	exon	7764724	7764771	.	+	.	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	intron	7764772	7764926	.	+	.	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	CDS	7764927	7764941	0.56	+	0	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	exon	7764927	7764941	.	+	.	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	intron	7764942	7765138	.	+	.	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	CDS	7765139	7765201	0.37	+	0	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	exon	7765139	7765201	.	+	.	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	intron	7765202	7765255	.	+	.	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	CDS	7765256	7765588	0.74	+	0	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	exon	7765256	7765588	.	+	.	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
Ledus.S3	AUGUSTUS	stop_codon	7765589	7765591	.	+	0	transcript_id "Ledus.S3G103200.t1"; gene_id "Ledus.S3G103200"
# This transcript jg12618.t2 is derived from g6240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12619.t1 is derived from g6241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13251444	13254685	.	-	.	Ledus.S4G177500
Ledus.S4	AUGUSTUS	transcript	13251444	13254685	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	stop_codon	13251441	13251443	.	-	0	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13251444	13251626	0.95	-	0	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13251444	13251626	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	intron	13251627	13251724	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13251725	13251802	0.99	-	0	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13251725	13251802	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	intron	13251803	13251913	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13251914	13252016	0.98	-	1	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13251914	13252016	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	intron	13252017	13252115	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13252116	13252276	1	-	0	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13252116	13252276	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	intron	13252277	13252368	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13252369	13252512	1	-	0	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13252369	13252512	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	intron	13252513	13252583	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13252584	13252707	0.76	-	1	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13252584	13252707	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	intron	13252708	13253030	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13253031	13253152	0.45	-	0	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13253031	13253152	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	intron	13253153	13253254	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13253255	13253410	1	-	0	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13253255	13253410	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	intron	13253411	13253541	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13253542	13253721	1	-	0	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13253542	13253721	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	intron	13253722	13253818	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13253819	13253939	0.72	-	1	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13253819	13253939	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	intron	13253940	13254023	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13254024	13254077	0.69	-	1	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13254024	13254077	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	intron	13254078	13254171	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13254172	13254432	1	-	1	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13254172	13254432	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	intron	13254433	13254662	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	CDS	13254663	13254685	0.99	-	0	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	exon	13254663	13254685	.	-	.	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
Ledus.S4	AUGUSTUS	start_codon	13254683	13254685	.	-	0	transcript_id "Ledus.S4G177500.t1"; gene_id "Ledus.S4G177500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8577.t1 is derived from g9607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	274317	278657	.	-	.	Ledus.S3G005400
Ledus.S3	AUGUSTUS	transcript	274317	278657	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	stop_codon	274314	274316	.	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	274317	274418	0.82	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	274317	274418	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	274419	274506	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	274507	274590	1	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	274507	274590	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	274591	274681	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	274682	274829	1	-	1	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	274682	274829	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	274830	274915	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	274916	275065	1	-	1	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	274916	275065	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	275066	275152	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	275153	275355	1	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	275153	275355	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	275356	275451	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	275452	275571	1	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	275452	275571	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	275572	275693	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	275694	275858	1	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	275694	275858	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	275859	275947	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	275948	276034	1	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	275948	276034	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	276035	276124	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	276125	276274	1	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	276125	276274	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	276275	276365	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	276366	276458	1	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	276366	276458	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	276459	276560	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	276561	276731	1	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	276561	276731	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	276732	276869	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	276870	276946	0.68	-	2	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	276870	276946	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	276947	277196	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	277197	277293	0.76	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	277197	277293	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	277294	277489	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	277490	277753	1	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	277490	277753	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	277754	277837	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	277838	277925	1	-	1	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	277838	277925	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	277926	278040	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	278041	278102	1	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	278041	278102	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	intron	278103	278429	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	CDS	278430	278657	1	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	exon	278430	278657	.	-	.	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
Ledus.S3	AUGUSTUS	start_codon	278655	278657	.	-	0	transcript_id "Ledus.S3G005400.t1"; gene_id "Ledus.S3G005400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6274.t1 is derived from g3717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30077942	30078151	.	+	.	Ledus.S1G369500
Ledus.S1	AUGUSTUS	transcript	30077942	30078151	.	+	.	transcript_id "Ledus.S1G369500.t1"; gene_id "Ledus.S1G369500"
Ledus.S1	AUGUSTUS	start_codon	30077942	30077944	.	+	0	transcript_id "Ledus.S1G369500.t1"; gene_id "Ledus.S1G369500"
Ledus.S1	AUGUSTUS	CDS	30077942	30078151	0.97	+	0	transcript_id "Ledus.S1G369500.t1"; gene_id "Ledus.S1G369500"
Ledus.S1	AUGUSTUS	exon	30077942	30078151	.	+	.	transcript_id "Ledus.S1G369500.t1"; gene_id "Ledus.S1G369500"
Ledus.S1	AUGUSTUS	stop_codon	30078152	30078154	.	+	0	transcript_id "Ledus.S1G369500.t1"; gene_id "Ledus.S1G369500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1644.t1 is derived from g8505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11523743	11525709	.	-	.	Ledus.S2G152600
Ledus.S2	AUGUSTUS	transcript	11523743	11525709	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	stop_codon	11523740	11523742	.	-	0	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	CDS	11523743	11523824	0.65	-	1	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	exon	11523743	11523824	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	intron	11523825	11523918	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	CDS	11523919	11523938	0.71	-	0	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	exon	11523919	11523938	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	intron	11523939	11524074	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	CDS	11524075	11524146	0.57	-	0	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	exon	11524075	11524146	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	intron	11524147	11524473	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	CDS	11524474	11524535	1	-	2	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	exon	11524474	11524535	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	intron	11524536	11524612	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	CDS	11524613	11524700	1	-	0	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	exon	11524613	11524700	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	intron	11524701	11524926	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	CDS	11524927	11525030	1	-	2	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	exon	11524927	11525030	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	intron	11525031	11525284	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	CDS	11525285	11525412	1	-	1	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	exon	11525285	11525412	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	intron	11525413	11525647	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	CDS	11525648	11525709	0.91	-	0	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	exon	11525648	11525709	.	-	.	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
Ledus.S2	AUGUSTUS	start_codon	11525707	11525709	.	-	0	transcript_id "Ledus.S2G152600.t1"; gene_id "Ledus.S2G152600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12770.t1 is derived from g6392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14385267	14386938	.	-	.	Ledus.S4G192600
Ledus.S4	AUGUSTUS	transcript	14385267	14386938	.	-	.	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	stop_codon	14385264	14385266	.	-	0	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	CDS	14385267	14385457	0.3	-	2	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	exon	14385267	14385457	.	-	.	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	intron	14385458	14385619	.	-	.	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	CDS	14385620	14385722	0.98	-	0	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	exon	14385620	14385722	.	-	.	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	intron	14385723	14385945	.	-	.	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	CDS	14385946	14386278	1	-	0	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	exon	14385946	14386278	.	-	.	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	intron	14386279	14386824	.	-	.	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	CDS	14386825	14386938	0.98	-	0	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	exon	14386825	14386938	.	-	.	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
Ledus.S4	AUGUSTUS	start_codon	14386936	14386938	.	-	0	transcript_id "Ledus.S4G192600.t1"; gene_id "Ledus.S4G192600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1037.t1 is derived from g7898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6895273	6901518	.	+	.	Ledus.S2G091900
Ledus.S2	AUGUSTUS	transcript	6895273	6901518	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	start_codon	6895273	6895275	.	+	0	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6895273	6895569	0.94	+	0	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6895273	6895569	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6895570	6895655	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6895656	6895747	1	+	0	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6895656	6895747	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6895748	6895833	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6895834	6895919	1	+	1	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6895834	6895919	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6895920	6896023	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6896024	6896160	1	+	2	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6896024	6896160	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6896161	6896278	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6896279	6896353	1	+	0	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6896279	6896353	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6896354	6896494	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6896495	6896586	1	+	0	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6896495	6896586	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6896587	6896736	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6896737	6896808	1	+	1	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6896737	6896808	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6896809	6896901	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6896902	6896981	1	+	1	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6896902	6896981	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6896982	6897083	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6897084	6897121	1	+	2	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6897084	6897121	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6897122	6897242	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6897243	6897249	1	+	0	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6897243	6897249	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6897250	6897385	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6897386	6897541	1	+	2	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6897386	6897541	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6897542	6897638	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6897639	6897714	1	+	2	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6897639	6897714	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6897715	6897808	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6897809	6897933	1	+	1	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6897809	6897933	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6897934	6898069	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6898070	6898104	1	+	2	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6898070	6898104	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6898105	6898261	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6898262	6898320	1	+	0	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6898262	6898320	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6898321	6898459	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6898460	6898543	1	+	1	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6898460	6898543	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6898544	6898633	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6898634	6898726	0.94	+	1	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6898634	6898726	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6898727	6898844	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6898845	6898893	1	+	1	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6898845	6898893	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6898894	6899021	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6899022	6899109	1	+	0	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6899022	6899109	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6899110	6899223	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6899224	6899424	1	+	2	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6899224	6899424	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6899425	6899554	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6899555	6899680	0.93	+	2	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6899555	6899680	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6899681	6899782	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6899783	6899882	1	+	2	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6899783	6899882	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6899883	6900016	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6900017	6900122	1	+	1	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6900017	6900122	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6900123	6900232	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6900233	6900372	1	+	0	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6900233	6900372	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6900373	6900470	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6900471	6900629	1	+	1	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6900471	6900629	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6900630	6900708	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6900709	6900831	1	+	1	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6900709	6900831	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	intron	6900832	6900914	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	CDS	6900915	6901518	1	+	1	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	exon	6900915	6901518	.	+	.	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
Ledus.S2	AUGUSTUS	stop_codon	6901519	6901521	.	+	0	transcript_id "Ledus.S2G091900.t1"; gene_id "Ledus.S2G091900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4278.t1 is derived from g1714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15925339	15925650	.	+	.	Ledus.S1G169900
Ledus.S1	AUGUSTUS	transcript	15925339	15925650	.	+	.	transcript_id "Ledus.S1G169900.t1"; gene_id "Ledus.S1G169900"
Ledus.S1	AUGUSTUS	start_codon	15925339	15925341	.	+	0	transcript_id "Ledus.S1G169900.t1"; gene_id "Ledus.S1G169900"
Ledus.S1	AUGUSTUS	CDS	15925339	15925650	0.99	+	0	transcript_id "Ledus.S1G169900.t1"; gene_id "Ledus.S1G169900"
Ledus.S1	AUGUSTUS	exon	15925339	15925650	.	+	.	transcript_id "Ledus.S1G169900.t1"; gene_id "Ledus.S1G169900"
Ledus.S1	AUGUSTUS	stop_codon	15925651	15925653	.	+	0	transcript_id "Ledus.S1G169900.t1"; gene_id "Ledus.S1G169900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9127.t1 is derived from g10157.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4707388	4710587	.	+	.	Ledus.S3G060400
Ledus.S3	AUGUSTUS	transcript	4707388	4710587	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	start_codon	4707388	4707390	.	+	0	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4707388	4707738	0.98	+	0	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4707388	4707738	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4707739	4707865	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4707866	4707952	1	+	0	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4707866	4707952	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4707953	4708153	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4708154	4708210	1	+	0	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4708154	4708210	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4708211	4708343	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4708344	4708487	0.92	+	0	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4708344	4708487	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4708488	4708609	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4708610	4708675	1	+	0	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4708610	4708675	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4708676	4708823	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4708824	4708991	1	+	0	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4708824	4708991	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4708992	4709112	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4709113	4709430	1	+	0	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4709113	4709430	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4709431	4709522	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4709523	4709570	0.98	+	0	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4709523	4709570	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4709571	4709671	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4709672	4709694	0.98	+	0	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4709672	4709694	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4709695	4710004	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4710005	4710032	0.32	+	1	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4710005	4710032	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4710033	4710175	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4710176	4710239	0.45	+	0	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4710176	4710239	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4710240	4710332	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4710333	4710416	0.98	+	2	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4710333	4710416	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4710417	4710579	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4710580	4710587	0.98	+	2	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4710580	4710587	.	+	.	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	stop_codon	4710588	4710590	.	+	0	transcript_id "Ledus.S3G060400.t1"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	transcript	4707388	4710587	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	start_codon	4707388	4707390	.	+	0	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4707388	4707738	0.96	+	0	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4707388	4707738	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4707739	4707865	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4707866	4708060	0.57	+	0	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4707866	4708060	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4708061	4708153	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4708154	4708210	1	+	0	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4708154	4708210	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4708211	4708343	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4708344	4708487	0.94	+	0	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4708344	4708487	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4708488	4708609	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4708610	4708675	1	+	0	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4708610	4708675	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4708676	4708823	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4708824	4708991	1	+	0	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4708824	4708991	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4708992	4709112	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4709113	4709430	1	+	0	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4709113	4709430	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4709431	4709522	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4709523	4709570	0.96	+	0	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4709523	4709570	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4709571	4709671	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4709672	4709694	0.97	+	0	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4709672	4709694	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4709695	4710004	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4710005	4710032	0.3	+	1	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4710005	4710032	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4710033	4710175	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4710176	4710239	0.38	+	0	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4710176	4710239	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4710240	4710332	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4710333	4710416	0.95	+	2	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4710333	4710416	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	intron	4710417	4710579	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	CDS	4710580	4710587	0.95	+	2	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	exon	4710580	4710587	.	+	.	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
Ledus.S3	AUGUSTUS	stop_codon	4710588	4710590	.	+	0	transcript_id "Ledus.S3G060400.t2"; gene_id "Ledus.S3G060400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12570.t1 is derived from g6192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12913210	12916276	.	-	.	Ledus.S4G172600
Ledus.S4	AUGUSTUS	transcript	12913210	12916276	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	stop_codon	12913207	12913209	.	-	0	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	CDS	12913210	12913428	1	-	0	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	exon	12913210	12913428	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	intron	12913429	12913536	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	CDS	12913537	12913622	0.99	-	2	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	exon	12913537	12913622	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	intron	12913623	12913705	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	CDS	12913706	12913835	1	-	0	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	exon	12913706	12913835	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	intron	12913836	12913912	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	CDS	12913913	12914020	1	-	0	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	exon	12913913	12914020	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	intron	12914021	12914219	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	CDS	12914220	12914301	1	-	1	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	exon	12914220	12914301	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	intron	12914302	12914397	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	CDS	12914398	12914450	1	-	0	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	exon	12914398	12914450	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	intron	12914451	12914602	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	CDS	12914603	12914686	1	-	0	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	exon	12914603	12914686	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	intron	12914687	12914871	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	CDS	12914872	12915029	1	-	2	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	exon	12914872	12915029	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	intron	12915030	12915172	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	CDS	12915173	12915643	1	-	2	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	exon	12915173	12915643	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	intron	12915644	12915798	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	CDS	12915799	12916276	0.97	-	0	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	exon	12915799	12916276	.	-	.	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
Ledus.S4	AUGUSTUS	start_codon	12916274	12916276	.	-	0	transcript_id "Ledus.S4G172600.t1"; gene_id "Ledus.S4G172600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8169.t1 is derived from g12840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9590780	9593242	.	-	.	Ledus.S5G094700
Ledus.S5	AUGUSTUS	transcript	9590780	9593242	.	-	.	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	stop_codon	9590777	9590779	.	-	0	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	CDS	9590780	9591052	1	-	0	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	exon	9590780	9591052	.	-	.	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	intron	9591053	9591148	.	-	.	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	CDS	9591149	9591508	0.98	-	0	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	exon	9591149	9591508	.	-	.	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	intron	9591509	9591614	.	-	.	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	CDS	9591615	9592325	1	-	0	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	exon	9591615	9592325	.	-	.	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	intron	9592326	9592420	.	-	.	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	CDS	9592421	9592519	1	-	0	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	exon	9592421	9592519	.	-	.	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	intron	9592520	9592612	.	-	.	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	CDS	9592613	9593242	0.36	-	0	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	exon	9592613	9593242	.	-	.	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
Ledus.S5	AUGUSTUS	start_codon	9593240	9593242	.	-	0	transcript_id "Ledus.S5G094700.t1"; gene_id "Ledus.S5G094700"
# This transcript jg2701.t2 is derived from g134.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2701.t3 is derived from g134.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2702.t1 is derived from g135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2088290	2088637	.	-	.	Ledus.S1G012300
Ledus.S1	AUGUSTUS	transcript	2088290	2088637	.	-	.	transcript_id "Ledus.S1G012300.t1"; gene_id "Ledus.S1G012300"
Ledus.S1	AUGUSTUS	stop_codon	2088287	2088289	.	-	0	transcript_id "Ledus.S1G012300.t1"; gene_id "Ledus.S1G012300"
Ledus.S1	AUGUSTUS	CDS	2088290	2088637	0.65	-	0	transcript_id "Ledus.S1G012300.t1"; gene_id "Ledus.S1G012300"
Ledus.S1	AUGUSTUS	exon	2088290	2088637	.	-	.	transcript_id "Ledus.S1G012300.t1"; gene_id "Ledus.S1G012300"
Ledus.S1	AUGUSTUS	start_codon	2088635	2088637	.	-	0	transcript_id "Ledus.S1G012300.t1"; gene_id "Ledus.S1G012300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1211.t1 is derived from g8072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8614894	8616559	.	-	.	Ledus.S2G109300
Ledus.S2	AUGUSTUS	transcript	8614894	8616559	.	-	.	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	stop_codon	8614891	8614893	.	-	0	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	CDS	8614894	8615458	0.96	-	1	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	exon	8614894	8615458	.	-	.	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	intron	8615459	8615840	.	-	.	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	CDS	8615841	8615955	0.87	-	2	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	exon	8615841	8615955	.	-	.	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	intron	8615956	8616064	.	-	.	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	CDS	8616065	8616154	1	-	2	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	exon	8616065	8616154	.	-	.	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	intron	8616155	8616222	.	-	.	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	CDS	8616223	8616310	0.99	-	0	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	exon	8616223	8616310	.	-	.	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	intron	8616311	8616427	.	-	.	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	CDS	8616428	8616559	0.93	-	0	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	exon	8616428	8616559	.	-	.	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
Ledus.S2	AUGUSTUS	start_codon	8616557	8616559	.	-	0	transcript_id "Ledus.S2G109300.t1"; gene_id "Ledus.S2G109300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4492.t1 is derived from g1928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17358145	17358870	.	+	.	Ledus.S1G191300
Ledus.S1	AUGUSTUS	transcript	17358145	17358870	.	+	.	transcript_id "Ledus.S1G191300.t1"; gene_id "Ledus.S1G191300"
Ledus.S1	AUGUSTUS	start_codon	17358145	17358147	.	+	0	transcript_id "Ledus.S1G191300.t1"; gene_id "Ledus.S1G191300"
Ledus.S1	AUGUSTUS	CDS	17358145	17358399	0.97	+	0	transcript_id "Ledus.S1G191300.t1"; gene_id "Ledus.S1G191300"
Ledus.S1	AUGUSTUS	exon	17358145	17358399	.	+	.	transcript_id "Ledus.S1G191300.t1"; gene_id "Ledus.S1G191300"
Ledus.S1	AUGUSTUS	intron	17358400	17358573	.	+	.	transcript_id "Ledus.S1G191300.t1"; gene_id "Ledus.S1G191300"
Ledus.S1	AUGUSTUS	CDS	17358574	17358870	0.68	+	0	transcript_id "Ledus.S1G191300.t1"; gene_id "Ledus.S1G191300"
Ledus.S1	AUGUSTUS	exon	17358574	17358870	.	+	.	transcript_id "Ledus.S1G191300.t1"; gene_id "Ledus.S1G191300"
Ledus.S1	AUGUSTUS	stop_codon	17358871	17358873	.	+	0	transcript_id "Ledus.S1G191300.t1"; gene_id "Ledus.S1G191300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10571.t1 is derived from g11601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16214915	16217331	.	+	.	Ledus.S3G204800
Ledus.S3	AUGUSTUS	transcript	16214915	16217331	.	+	.	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	start_codon	16214915	16214917	.	+	0	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	CDS	16214915	16215736	0.82	+	0	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	exon	16214915	16215736	.	+	.	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	intron	16215737	16215871	.	+	.	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	CDS	16215872	16216012	0.99	+	0	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	exon	16215872	16216012	.	+	.	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	intron	16216013	16216111	.	+	.	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	CDS	16216112	16216456	1	+	0	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	exon	16216112	16216456	.	+	.	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	intron	16216457	16216703	.	+	.	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	CDS	16216704	16216775	1	+	0	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	exon	16216704	16216775	.	+	.	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	intron	16216776	16216901	.	+	.	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	CDS	16216902	16217081	1	+	0	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	exon	16216902	16217081	.	+	.	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	intron	16217082	16217187	.	+	.	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	CDS	16217188	16217331	1	+	0	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	exon	16217188	16217331	.	+	.	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
Ledus.S3	AUGUSTUS	stop_codon	16217332	16217334	.	+	0	transcript_id "Ledus.S3G204800.t1"; gene_id "Ledus.S3G204800"
# This transcript jg1630.t2 is derived from g8491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1631.t1 is derived from g8492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11488330	11489246	.	-	.	Ledus.S2G151300
Ledus.S2	AUGUSTUS	transcript	11488330	11489246	.	-	.	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	stop_codon	11488327	11488329	.	-	0	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	CDS	11488330	11488359	1	-	0	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	exon	11488330	11488359	.	-	.	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	intron	11488360	11488548	.	-	.	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	CDS	11488549	11488638	1	-	0	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	exon	11488549	11488638	.	-	.	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	intron	11488639	11488756	.	-	.	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	CDS	11488757	11488844	1	-	1	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	exon	11488757	11488844	.	-	.	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	intron	11488845	11489169	.	-	.	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	CDS	11489170	11489246	0.99	-	0	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	exon	11489170	11489246	.	-	.	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
Ledus.S2	AUGUSTUS	start_codon	11489244	11489246	.	-	0	transcript_id "Ledus.S2G151300.t1"; gene_id "Ledus.S2G151300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10598.t1 is derived from g11628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16291551	16293368	.	-	.	Ledus.S3G207500
Ledus.S3	AUGUSTUS	transcript	16291551	16293368	.	-	.	transcript_id "Ledus.S3G207500.t1"; gene_id "Ledus.S3G207500"
Ledus.S3	AUGUSTUS	stop_codon	16291548	16291550	.	-	0	transcript_id "Ledus.S3G207500.t1"; gene_id "Ledus.S3G207500"
Ledus.S3	AUGUSTUS	CDS	16291551	16293368	1	-	0	transcript_id "Ledus.S3G207500.t1"; gene_id "Ledus.S3G207500"
Ledus.S3	AUGUSTUS	exon	16291551	16293368	.	-	.	transcript_id "Ledus.S3G207500.t1"; gene_id "Ledus.S3G207500"
Ledus.S3	AUGUSTUS	start_codon	16293366	16293368	.	-	0	transcript_id "Ledus.S3G207500.t1"; gene_id "Ledus.S3G207500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12628.t1 is derived from g6250.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13362321	13365500	.	-	.	Ledus.S4G178400
Ledus.S4	AUGUSTUS	transcript	13362321	13365500	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	stop_codon	13362318	13362320	.	-	0	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	CDS	13362321	13362407	1	-	0	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	exon	13362321	13362407	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	intron	13362408	13362504	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	CDS	13362505	13362613	1	-	1	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	exon	13362505	13362613	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	intron	13362614	13362791	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	CDS	13362792	13362942	1	-	2	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	exon	13362792	13362942	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	intron	13362943	13363026	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	CDS	13363027	13363327	1	-	0	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	exon	13363027	13363327	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	intron	13363328	13363450	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	CDS	13363451	13363724	1	-	1	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	exon	13363451	13363724	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	intron	13363725	13363802	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	CDS	13363803	13364671	1	-	0	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	exon	13363803	13364671	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	intron	13364672	13364786	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	CDS	13364787	13364968	0.76	-	2	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	exon	13364787	13364968	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	intron	13364969	13365049	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	CDS	13365050	13365500	0.76	-	0	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	exon	13365050	13365500	.	-	.	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
Ledus.S4	AUGUSTUS	start_codon	13365498	13365500	.	-	0	transcript_id "Ledus.S4G178400.t1"; gene_id "Ledus.S4G178400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5608.t1 is derived from g3047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25353372	25356505	.	-	.	Ledus.S1G302900
Ledus.S1	AUGUSTUS	transcript	25353372	25356505	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	stop_codon	25353369	25353371	.	-	0	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	CDS	25353372	25353683	0.98	-	0	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	exon	25353372	25353683	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	intron	25353684	25353854	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	CDS	25353855	25354019	1	-	0	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	exon	25353855	25354019	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	intron	25354020	25354187	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	CDS	25354188	25354413	1	-	1	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	exon	25354188	25354413	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	intron	25354414	25354556	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	CDS	25354557	25354642	1	-	0	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	exon	25354557	25354642	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	intron	25354643	25354722	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	CDS	25354723	25354803	1	-	0	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	exon	25354723	25354803	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	intron	25354804	25354940	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	CDS	25354941	25355039	1	-	0	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	exon	25354941	25355039	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	intron	25355040	25355229	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	CDS	25355230	25355351	1	-	2	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	exon	25355230	25355351	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	intron	25355352	25355524	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	CDS	25355525	25355645	1	-	0	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	exon	25355525	25355645	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	intron	25355646	25355868	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	CDS	25355869	25355919	1	-	0	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	exon	25355869	25355919	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	intron	25355920	25356070	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	CDS	25356071	25356172	1	-	0	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	exon	25356071	25356172	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	intron	25356173	25356421	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	CDS	25356422	25356505	0.5	-	0	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	exon	25356422	25356505	.	-	.	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
Ledus.S1	AUGUSTUS	start_codon	25356503	25356505	.	-	0	transcript_id "Ledus.S1G302900.t1"; gene_id "Ledus.S1G302900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4309.t1 is derived from g1745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16142629	16143231	.	-	.	Ledus.S1G173000
Ledus.S1	AUGUSTUS	transcript	16142629	16143231	.	-	.	transcript_id "Ledus.S1G173000.t1"; gene_id "Ledus.S1G173000"
Ledus.S1	AUGUSTUS	stop_codon	16142626	16142628	.	-	0	transcript_id "Ledus.S1G173000.t1"; gene_id "Ledus.S1G173000"
Ledus.S1	AUGUSTUS	CDS	16142629	16143231	0.67	-	0	transcript_id "Ledus.S1G173000.t1"; gene_id "Ledus.S1G173000"
Ledus.S1	AUGUSTUS	exon	16142629	16143231	.	-	.	transcript_id "Ledus.S1G173000.t1"; gene_id "Ledus.S1G173000"
Ledus.S1	AUGUSTUS	start_codon	16143229	16143231	.	-	0	transcript_id "Ledus.S1G173000.t1"; gene_id "Ledus.S1G173000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8152.t1 is derived from g12823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9424593	9430130	.	+	.	Ledus.S5G093000
Ledus.S5	AUGUSTUS	transcript	9424593	9430130	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	start_codon	9424593	9424595	.	+	0	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	CDS	9424593	9424812	0.31	+	0	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	exon	9424593	9424812	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	intron	9424813	9425133	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	CDS	9425134	9425370	0.8	+	2	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	exon	9425134	9425370	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	intron	9425371	9425473	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	CDS	9425474	9425518	0.93	+	2	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	exon	9425474	9425518	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	intron	9425519	9425624	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	CDS	9425625	9425784	1	+	2	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	exon	9425625	9425784	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	intron	9425785	9425927	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	CDS	9425928	9426798	1	+	1	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	exon	9425928	9426798	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	intron	9426799	9426948	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	CDS	9426949	9427131	1	+	0	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	exon	9426949	9427131	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	intron	9427132	9427222	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	CDS	9427223	9427528	1	+	0	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	exon	9427223	9427528	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	intron	9427529	9427664	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	CDS	9427665	9430130	0.99	+	0	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	exon	9427665	9430130	.	+	.	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
Ledus.S5	AUGUSTUS	stop_codon	9430131	9430133	.	+	0	transcript_id "Ledus.S5G093000.t1"; gene_id "Ledus.S5G093000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5118.t1 is derived from g2557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21795014	21798076	.	-	.	Ledus.S1G253900
Ledus.S1	AUGUSTUS	transcript	21795014	21798076	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	stop_codon	21795011	21795013	.	-	0	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	CDS	21795014	21795354	0.39	-	2	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	exon	21795014	21795354	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	intron	21795355	21795672	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	CDS	21795673	21795777	0.6	-	2	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	exon	21795673	21795777	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	intron	21795778	21795866	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	CDS	21795867	21795903	1	-	0	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	exon	21795867	21795903	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	intron	21795904	21795992	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	CDS	21795993	21796327	1	-	2	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	exon	21795993	21796327	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	intron	21796328	21796408	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	CDS	21796409	21796553	1	-	0	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	exon	21796409	21796553	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	intron	21796554	21796647	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	CDS	21796648	21796770	1	-	0	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	exon	21796648	21796770	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	intron	21796771	21796882	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	CDS	21796883	21797164	0.97	-	0	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	exon	21796883	21797164	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	intron	21797165	21797310	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	CDS	21797311	21797522	0.96	-	2	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	exon	21797311	21797522	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	intron	21797523	21797634	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	CDS	21797635	21798076	0.9	-	0	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	exon	21797635	21798076	.	-	.	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
Ledus.S1	AUGUSTUS	start_codon	21798074	21798076	.	-	0	transcript_id "Ledus.S1G253900.t1"; gene_id "Ledus.S1G253900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1280.t1 is derived from g8141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9040003	9040849	.	+	.	Ledus.S2G116200
Ledus.S2	AUGUSTUS	transcript	9040003	9040849	.	+	.	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	start_codon	9040003	9040005	.	+	0	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	CDS	9040003	9040209	0.91	+	0	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	exon	9040003	9040209	.	+	.	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	intron	9040210	9040301	.	+	.	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	CDS	9040302	9040371	1	+	0	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	exon	9040302	9040371	.	+	.	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	intron	9040372	9040457	.	+	.	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	CDS	9040458	9040512	1	+	2	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	exon	9040458	9040512	.	+	.	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	intron	9040513	9040593	.	+	.	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	CDS	9040594	9040648	0.84	+	1	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	exon	9040594	9040648	.	+	.	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	intron	9040649	9040759	.	+	.	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	CDS	9040760	9040849	0.78	+	0	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	exon	9040760	9040849	.	+	.	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
Ledus.S2	AUGUSTUS	stop_codon	9040850	9040852	.	+	0	transcript_id "Ledus.S2G116200.t1"; gene_id "Ledus.S2G116200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3755.t1 is derived from g1191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11665121	11665740	.	+	.	Ledus.S1G117600
Ledus.S1	AUGUSTUS	transcript	11665121	11665740	.	+	.	transcript_id "Ledus.S1G117600.t1"; gene_id "Ledus.S1G117600"
Ledus.S1	AUGUSTUS	start_codon	11665121	11665123	.	+	0	transcript_id "Ledus.S1G117600.t1"; gene_id "Ledus.S1G117600"
Ledus.S1	AUGUSTUS	CDS	11665121	11665169	0.82	+	0	transcript_id "Ledus.S1G117600.t1"; gene_id "Ledus.S1G117600"
Ledus.S1	AUGUSTUS	exon	11665121	11665169	.	+	.	transcript_id "Ledus.S1G117600.t1"; gene_id "Ledus.S1G117600"
Ledus.S1	AUGUSTUS	intron	11665170	11665291	.	+	.	transcript_id "Ledus.S1G117600.t1"; gene_id "Ledus.S1G117600"
Ledus.S1	AUGUSTUS	CDS	11665292	11665391	1	+	2	transcript_id "Ledus.S1G117600.t1"; gene_id "Ledus.S1G117600"
Ledus.S1	AUGUSTUS	exon	11665292	11665391	.	+	.	transcript_id "Ledus.S1G117600.t1"; gene_id "Ledus.S1G117600"
Ledus.S1	AUGUSTUS	intron	11665392	11665589	.	+	.	transcript_id "Ledus.S1G117600.t1"; gene_id "Ledus.S1G117600"
Ledus.S1	AUGUSTUS	CDS	11665590	11665740	0.99	+	1	transcript_id "Ledus.S1G117600.t1"; gene_id "Ledus.S1G117600"
Ledus.S1	AUGUSTUS	exon	11665590	11665740	.	+	.	transcript_id "Ledus.S1G117600.t1"; gene_id "Ledus.S1G117600"
Ledus.S1	AUGUSTUS	stop_codon	11665741	11665743	.	+	0	transcript_id "Ledus.S1G117600.t1"; gene_id "Ledus.S1G117600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1980.t1 is derived from g8843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14006579	14010273	.	+	.	Ledus.S2G186200
Ledus.S2	AUGUSTUS	transcript	14006579	14010273	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	start_codon	14006579	14006581	.	+	0	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14006579	14006773	0.64	+	0	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14006579	14006773	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14006774	14006854	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14006855	14006880	0.73	+	0	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14006855	14006880	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14006881	14006954	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14006955	14007052	0.73	+	1	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14006955	14007052	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14007053	14007144	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14007145	14007201	1	+	2	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14007145	14007201	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14007202	14007304	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14007305	14007357	1	+	2	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14007305	14007357	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14007358	14007425	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14007426	14007477	1	+	0	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14007426	14007477	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14007478	14007567	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14007568	14007633	1	+	2	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14007568	14007633	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14007634	14007728	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14007729	14007785	1	+	2	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14007729	14007785	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14007786	14007871	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14007872	14008009	0.72	+	2	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14007872	14008009	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14008010	14008419	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14008420	14008449	0.75	+	2	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14008420	14008449	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14008450	14008607	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14008608	14008759	1	+	2	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14008608	14008759	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14008760	14008843	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14008844	14008894	1	+	0	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14008844	14008894	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14008895	14009084	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14009085	14009161	1	+	0	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14009085	14009161	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14009162	14009250	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14009251	14009338	1	+	1	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14009251	14009338	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14009339	14009417	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14009418	14009693	1	+	0	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14009418	14009693	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14009694	14009829	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14009830	14010078	0.7	+	0	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14009830	14010078	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	intron	14010079	14010189	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	CDS	14010190	14010273	0.68	+	0	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	exon	14010190	14010273	.	+	.	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
Ledus.S2	AUGUSTUS	stop_codon	14010274	14010276	.	+	0	transcript_id "Ledus.S2G186200.t1"; gene_id "Ledus.S2G186200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9512.t1 is derived from g10542.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7525345	7528798	.	+	.	Ledus.S3G098900
Ledus.S3	AUGUSTUS	transcript	7525345	7528798	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	start_codon	7525345	7525347	.	+	0	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7525345	7525701	0.91	+	0	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7525345	7525701	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7525702	7526921	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7526922	7527084	1	+	0	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7526922	7527084	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7527085	7527188	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7527189	7527466	1	+	2	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7527189	7527466	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7527467	7527617	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7527618	7527682	0.96	+	0	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7527618	7527682	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7527683	7527760	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7527761	7527768	1	+	1	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7527761	7527768	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7527769	7528104	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7528105	7528171	1	+	2	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7528105	7528171	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7528172	7528370	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7528371	7528380	0.99	+	1	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7528371	7528380	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7528381	7528458	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7528459	7528506	0.8	+	0	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7528459	7528506	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7528507	7528666	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7528667	7528798	0.54	+	0	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7528667	7528798	.	+	.	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	stop_codon	7528799	7528801	.	+	0	transcript_id "Ledus.S3G098900.t1"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	transcript	7525345	7528798	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	start_codon	7525345	7525347	.	+	0	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7525345	7525701	0.97	+	0	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7525345	7525701	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7525702	7526921	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7526922	7527084	1	+	0	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7526922	7527084	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7527085	7527188	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7527189	7527466	0.99	+	2	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7527189	7527466	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7527467	7527617	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7527618	7527690	0.94	+	0	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7527618	7527690	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7527691	7527905	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7527906	7527932	0.88	+	2	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7527906	7527932	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7527933	7528104	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7528105	7528171	1	+	2	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7528105	7528171	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7528172	7528370	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7528371	7528380	0.98	+	1	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7528371	7528380	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7528381	7528458	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7528459	7528506	0.77	+	0	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7528459	7528506	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	intron	7528507	7528666	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	CDS	7528667	7528798	0.62	+	0	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	exon	7528667	7528798	.	+	.	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
Ledus.S3	AUGUSTUS	stop_codon	7528799	7528801	.	+	0	transcript_id "Ledus.S3G098900.t2"; gene_id "Ledus.S3G098900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3696.t1 is derived from g1132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10957192	10961480	.	+	.	Ledus.S1G111700
Ledus.S1	AUGUSTUS	transcript	10957192	10961480	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	start_codon	10957192	10957194	.	+	0	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	CDS	10957192	10957355	0.95	+	0	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	exon	10957192	10957355	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	intron	10957356	10957445	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	CDS	10957446	10957887	0.99	+	1	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	exon	10957446	10957887	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	intron	10957888	10958079	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	CDS	10958080	10959701	0.99	+	0	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	exon	10958080	10959701	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	intron	10959702	10959785	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	CDS	10959786	10959897	1	+	1	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	exon	10959786	10959897	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	intron	10959898	10960008	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	CDS	10960009	10960485	0.8	+	0	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	exon	10960009	10960485	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	intron	10960486	10960574	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	CDS	10960575	10960673	1	+	0	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	exon	10960575	10960673	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	intron	10960674	10960757	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	CDS	10960758	10961480	1	+	0	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	exon	10960758	10961480	.	+	.	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
Ledus.S1	AUGUSTUS	stop_codon	10961481	10961483	.	+	0	transcript_id "Ledus.S1G111700.t1"; gene_id "Ledus.S1G111700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2940.t1 is derived from g375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4749091	4753070	.	-	.	Ledus.S1G036100
Ledus.S1	AUGUSTUS	transcript	4749091	4753070	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	stop_codon	4749088	4749090	.	-	0	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	CDS	4749091	4750002	1	-	0	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	exon	4749091	4750002	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	intron	4750003	4750093	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	CDS	4750094	4750271	1	-	1	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	exon	4750094	4750271	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	intron	4750272	4750352	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	CDS	4750353	4750605	1	-	2	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	exon	4750353	4750605	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	intron	4750606	4750689	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	CDS	4750690	4750917	0.93	-	2	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	exon	4750690	4750917	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	intron	4750918	4751253	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	CDS	4751254	4751323	0.96	-	0	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	exon	4751254	4751323	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	intron	4751324	4751432	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	CDS	4751433	4751543	0.99	-	0	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	exon	4751433	4751543	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	intron	4751544	4751629	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	CDS	4751630	4751801	1	-	1	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	exon	4751630	4751801	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	intron	4751802	4751946	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	CDS	4751947	4752104	1	-	0	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	exon	4751947	4752104	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	intron	4752105	4752189	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	CDS	4752190	4752280	0.98	-	1	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	exon	4752190	4752280	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	intron	4752281	4752389	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	CDS	4752390	4752571	0.71	-	0	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	exon	4752390	4752571	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	intron	4752572	4752680	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	CDS	4752681	4753070	0.65	-	0	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	exon	4752681	4753070	.	-	.	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
Ledus.S1	AUGUSTUS	start_codon	4753068	4753070	.	-	0	transcript_id "Ledus.S1G036100.t1"; gene_id "Ledus.S1G036100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5247.t1 is derived from g2686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22675531	22677457	.	+	.	Ledus.S1G266800
Ledus.S1	AUGUSTUS	transcript	22675531	22677457	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	start_codon	22675531	22675533	.	+	0	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	CDS	22675531	22675729	0.71	+	0	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	exon	22675531	22675729	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	intron	22675730	22675834	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	CDS	22675835	22675896	1	+	2	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	exon	22675835	22675896	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	intron	22675897	22676020	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	CDS	22676021	22676075	1	+	0	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	exon	22676021	22676075	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	intron	22676076	22676252	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	CDS	22676253	22676325	1	+	2	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	exon	22676253	22676325	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	intron	22676326	22676417	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	CDS	22676418	22676499	1	+	1	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	exon	22676418	22676499	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	intron	22676500	22676583	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	CDS	22676584	22676666	1	+	0	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	exon	22676584	22676666	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	intron	22676667	22676747	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	CDS	22676748	22676880	1	+	1	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	exon	22676748	22676880	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	intron	22676881	22677006	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	CDS	22677007	22677085	1	+	0	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	exon	22677007	22677085	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	intron	22677086	22677185	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	CDS	22677186	22677250	1	+	2	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	exon	22677186	22677250	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	intron	22677251	22677400	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	CDS	22677401	22677457	0.97	+	0	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	exon	22677401	22677457	.	+	.	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
Ledus.S1	AUGUSTUS	stop_codon	22677458	22677460	.	+	0	transcript_id "Ledus.S1G266800.t1"; gene_id "Ledus.S1G266800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12240.t1 is derived from g5860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10604605	10607010	.	-	.	Ledus.S4G139600
Ledus.S4	AUGUSTUS	transcript	10604605	10607010	.	-	.	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	stop_codon	10604602	10604604	.	-	0	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	CDS	10604605	10604730	0.52	-	0	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	exon	10604605	10604730	.	-	.	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	intron	10604731	10604810	.	-	.	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	CDS	10604811	10604960	0.47	-	0	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	exon	10604811	10604960	.	-	.	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	intron	10604961	10605054	.	-	.	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	CDS	10605055	10605151	0.82	-	1	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	exon	10605055	10605151	.	-	.	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	intron	10605152	10605243	.	-	.	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	CDS	10605244	10605899	1	-	0	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	exon	10605244	10605899	.	-	.	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	intron	10605900	10606002	.	-	.	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	CDS	10606003	10606192	1	-	1	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	exon	10606003	10606192	.	-	.	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	intron	10606193	10606279	.	-	.	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	CDS	10606280	10607010	0.94	-	0	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	exon	10606280	10607010	.	-	.	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
Ledus.S4	AUGUSTUS	start_codon	10607008	10607010	.	-	0	transcript_id "Ledus.S4G139600.t1"; gene_id "Ledus.S4G139600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6497.t1 is derived from g3940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31632570	31636884	.	+	.	Ledus.S1G391800
Ledus.S1	AUGUSTUS	transcript	31632570	31636884	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	start_codon	31632570	31632572	.	+	0	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31632570	31633421	0.98	+	0	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31632570	31633421	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31633422	31633670	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31633671	31633937	0.89	+	0	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31633671	31633937	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31633938	31634061	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31634062	31634110	0.89	+	0	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31634062	31634110	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31634111	31634204	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31634205	31634340	0.96	+	2	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31634205	31634340	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31634341	31634818	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31634819	31634909	0.62	+	1	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31634819	31634909	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31634910	31635219	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31635220	31635352	0.95	+	0	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31635220	31635352	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31635353	31635434	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31635435	31635569	0.86	+	2	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31635435	31635569	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31635570	31635677	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31635678	31635820	1	+	2	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31635678	31635820	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31635821	31635903	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31635904	31636309	0.94	+	0	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31635904	31636309	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31636310	31636411	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31636412	31636884	1	+	2	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31636412	31636884	.	+	.	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	stop_codon	31636885	31636887	.	+	0	transcript_id "Ledus.S1G391800.t1"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	transcript	31632570	31636884	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	start_codon	31632570	31632572	.	+	0	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31632570	31633421	0.99	+	0	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31632570	31633421	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31633422	31633670	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31633671	31633937	0.87	+	0	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31633671	31633937	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31633938	31634061	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31634062	31634110	0.87	+	0	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31634062	31634110	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31634111	31634204	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31634205	31634340	0.78	+	2	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31634205	31634340	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31634341	31634818	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31634819	31635015	0.43	+	1	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31634819	31635015	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31635016	31635219	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31635220	31635249	1	+	2	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31635220	31635249	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31635250	31635332	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31635333	31635569	0.51	+	2	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31635333	31635569	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31635570	31635677	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31635678	31635820	1	+	2	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31635678	31635820	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31635821	31635903	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31635904	31636309	0.95	+	0	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31635904	31636309	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	intron	31636310	31636411	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	CDS	31636412	31636884	1	+	2	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	exon	31636412	31636884	.	+	.	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
Ledus.S1	AUGUSTUS	stop_codon	31636885	31636887	.	+	0	transcript_id "Ledus.S1G391800.t2"; gene_id "Ledus.S1G391800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7965.t1 is derived from g12636.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8260403	8261286	.	-	.	Ledus.S5G074300
Ledus.S5	AUGUSTUS	transcript	8260403	8261286	.	-	.	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	stop_codon	8260400	8260402	.	-	0	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	CDS	8260403	8260548	1	-	2	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	exon	8260403	8260548	.	-	.	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	intron	8260549	8260662	.	-	.	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	CDS	8260663	8260701	1	-	2	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	exon	8260663	8260701	.	-	.	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	intron	8260702	8260842	.	-	.	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	CDS	8260843	8260899	1	-	2	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	exon	8260843	8260899	.	-	.	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	intron	8260900	8261003	.	-	.	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	CDS	8261004	8261152	1	-	1	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	exon	8261004	8261152	.	-	.	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	intron	8261153	8261236	.	-	.	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	CDS	8261237	8261286	0.51	-	0	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	exon	8261237	8261286	.	-	.	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
Ledus.S5	AUGUSTUS	start_codon	8261284	8261286	.	-	0	transcript_id "Ledus.S5G074300.t1"; gene_id "Ledus.S5G074300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10033.t1 is derived from g11063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12091274	12094521	.	+	.	Ledus.S3G151000
Ledus.S3	AUGUSTUS	transcript	12091274	12094521	.	+	.	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	start_codon	12091274	12091276	.	+	0	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	CDS	12091274	12091448	0.71	+	0	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	exon	12091274	12091448	.	+	.	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	intron	12091449	12091532	.	+	.	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	CDS	12091533	12091612	1	+	2	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	exon	12091533	12091612	.	+	.	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	intron	12091613	12091690	.	+	.	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	CDS	12091691	12091865	1	+	0	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	exon	12091691	12091865	.	+	.	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	intron	12091866	12091953	.	+	.	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	CDS	12091954	12092036	1	+	2	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	exon	12091954	12092036	.	+	.	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	intron	12092037	12092130	.	+	.	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	CDS	12092131	12094521	1	+	0	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	exon	12092131	12094521	.	+	.	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
Ledus.S3	AUGUSTUS	stop_codon	12094522	12094524	.	+	0	transcript_id "Ledus.S3G151000.t1"; gene_id "Ledus.S3G151000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9436.t1 is derived from g10466.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6716242	6719598	.	+	.	Ledus.S3G091300
Ledus.S3	AUGUSTUS	transcript	6716242	6719598	.	+	.	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	start_codon	6716242	6716244	.	+	0	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	CDS	6716242	6716270	0.54	+	0	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	exon	6716242	6716270	.	+	.	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	intron	6716271	6716390	.	+	.	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	CDS	6716391	6716487	0.66	+	1	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	exon	6716391	6716487	.	+	.	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	intron	6716488	6716572	.	+	.	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	CDS	6716573	6716676	1	+	0	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	exon	6716573	6716676	.	+	.	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	intron	6716677	6716765	.	+	.	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	CDS	6716766	6719598	1	+	1	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	exon	6716766	6719598	.	+	.	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
Ledus.S3	AUGUSTUS	stop_codon	6719599	6719601	.	+	0	transcript_id "Ledus.S3G091300.t1"; gene_id "Ledus.S3G091300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6923.t1 is derived from g4367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35442954	35446845	.	+	.	Ledus.S1G434400
Ledus.S1	AUGUSTUS	transcript	35442954	35446845	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	start_codon	35442954	35442956	.	+	0	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35442954	35442965	0.99	+	0	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35442954	35442965	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	intron	35442966	35443119	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35443120	35443164	1	+	0	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35443120	35443164	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	intron	35443165	35443252	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35443253	35443456	0.49	+	0	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35443253	35443456	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	intron	35443457	35443548	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35443549	35443632	0.98	+	0	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35443549	35443632	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	intron	35443633	35443748	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35443749	35443840	1	+	0	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35443749	35443840	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	intron	35443841	35443974	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35443975	35444058	1	+	1	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35443975	35444058	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	intron	35444059	35444151	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35444152	35444249	1	+	1	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35444152	35444249	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	intron	35444250	35444867	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35444868	35445056	0.75	+	2	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35444868	35445056	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	intron	35445057	35445170	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35445171	35445517	1	+	2	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35445171	35445517	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	intron	35445518	35445624	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35445625	35445759	0.51	+	0	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35445625	35445759	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	intron	35445760	35445821	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35445822	35446276	0.82	+	0	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35445822	35446276	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	intron	35446277	35446405	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35446406	35446520	1	+	1	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35446406	35446520	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	intron	35446521	35446671	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	CDS	35446672	35446845	1	+	0	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	exon	35446672	35446845	.	+	.	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
Ledus.S1	AUGUSTUS	stop_codon	35446846	35446848	.	+	0	transcript_id "Ledus.S1G434400.t1"; gene_id "Ledus.S1G434400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2286.t1 is derived from g9149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16955783	16957255	.	+	.	Ledus.S2G216800
Ledus.S2	AUGUSTUS	transcript	16955783	16957255	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	start_codon	16955783	16955785	.	+	0	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	CDS	16955783	16956105	0.73	+	0	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	exon	16955783	16956105	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	intron	16956106	16956241	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	CDS	16956242	16956341	1	+	1	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	exon	16956242	16956341	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	intron	16956342	16956473	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	CDS	16956474	16956569	1	+	0	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	exon	16956474	16956569	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	intron	16956570	16956689	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	CDS	16956690	16956742	1	+	0	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	exon	16956690	16956742	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	intron	16956743	16956884	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	CDS	16956885	16956933	1	+	1	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	exon	16956885	16956933	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	intron	16956934	16957028	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	CDS	16957029	16957076	1	+	0	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	exon	16957029	16957076	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	intron	16957077	16957162	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	CDS	16957163	16957255	1	+	0	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	exon	16957163	16957255	.	+	.	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
Ledus.S2	AUGUSTUS	stop_codon	16957256	16957258	.	+	0	transcript_id "Ledus.S2G216800.t1"; gene_id "Ledus.S2G216800"
# This transcript jg6736.t2 is derived from g4179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 5 different transcripts
# This transcript jg6737.t1 is derived from g4180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33630436	33642311	.	-	.	Ledus.S1G415800
Ledus.S1	AUGUSTUS	transcript	33638464	33642311	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	stop_codon	33638461	33638463	.	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33638464	33638592	0.84	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33638464	33638592	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33638593	33638692	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33638693	33638859	1	-	2	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33638693	33638859	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33638860	33638943	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33638944	33639049	1	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33638944	33639049	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639050	33639134	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639135	33639172	1	-	2	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639135	33639172	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639173	33639318	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639319	33639406	1	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639319	33639406	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639407	33639498	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639499	33639552	1	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639499	33639552	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639553	33639647	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639648	33639756	1	-	1	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639648	33639756	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639757	33639851	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639852	33639934	1	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639852	33639934	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639935	33640041	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640042	33640104	1	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640042	33640104	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640105	33640206	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640207	33640269	1	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640207	33640269	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640270	33640403	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640404	33640502	1	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640404	33640502	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640503	33640597	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640598	33640657	1	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640598	33640657	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640658	33640765	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640766	33640824	0.95	-	2	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640766	33640824	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640825	33640934	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640935	33641049	1	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640935	33641049	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33641050	33641197	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33641198	33641367	1	-	2	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33641198	33641367	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33641368	33641518	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33641519	33641622	1	-	1	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33641519	33641622	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33641623	33641724	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33641725	33641819	1	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33641725	33641819	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33641820	33641917	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33641918	33642000	1	-	2	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33641918	33642000	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33642001	33642109	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33642110	33642311	0.92	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33642110	33642311	.	-	.	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	start_codon	33642309	33642311	.	-	0	transcript_id "Ledus.S1G415800.t1"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	transcript	33630436	33637949	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	stop_codon	33630433	33630435	.	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33630436	33630718	1	-	1	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33630436	33630718	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33630719	33630828	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33630829	33631016	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33630829	33631016	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33631017	33631189	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33631190	33631273	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33631190	33631273	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33631274	33631449	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33631450	33631515	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33631450	33631515	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33631516	33631608	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33631609	33631644	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33631609	33631644	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33631645	33631691	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33631692	33631760	0.74	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33631692	33631760	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33631761	33631922	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33631923	33632021	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33631923	33632021	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33632022	33632134	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33632135	33632359	0.66	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33632135	33632359	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33632360	33632480	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33632481	33632558	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33632481	33632558	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33632559	33632717	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33632718	33632786	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33632718	33632786	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33632787	33632925	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33632926	33633006	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33632926	33633006	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33633007	33633086	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33633087	33633206	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33633087	33633206	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33633207	33634132	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33634133	33634249	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33634133	33634249	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33634250	33634372	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33634373	33634410	1	-	2	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33634373	33634410	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33634411	33634537	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33634538	33634610	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33634538	33634610	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33634611	33634795	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33634796	33634867	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33634796	33634867	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33634868	33635045	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635046	33635111	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635046	33635111	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635112	33635204	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635205	33635284	1	-	2	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635205	33635284	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635285	33635402	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635403	33635448	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635403	33635448	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635449	33635764	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635765	33635805	1	-	2	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635765	33635805	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635806	33635962	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635963	33636081	0.91	-	1	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635963	33636081	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33636082	33636331	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33636332	33636359	0.97	-	2	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33636332	33636359	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33636360	33636447	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33636448	33636586	0.72	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33636448	33636586	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33636587	33636665	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33636666	33636809	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33636666	33636809	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33636810	33636889	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33636890	33637000	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33636890	33637000	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637001	33637076	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637077	33637232	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637077	33637232	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637233	33637371	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637372	33637473	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637372	33637473	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637474	33637564	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637565	33637636	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637565	33637636	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637637	33637730	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637731	33637949	1	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637731	33637949	.	-	.	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	start_codon	33637947	33637949	.	-	0	transcript_id "Ledus.S1G415800.t2"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	transcript	33630436	33637949	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	stop_codon	33630433	33630435	.	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33630436	33630718	0.99	-	1	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33630436	33630718	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33630719	33630828	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33630829	33631016	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33630829	33631016	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33631017	33631189	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33631190	33631273	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33631190	33631273	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33631274	33631449	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33631450	33631515	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33631450	33631515	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33631516	33631691	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33631692	33631760	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33631692	33631760	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33631761	33631922	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33631923	33632021	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33631923	33632021	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33632022	33632134	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33632135	33632359	0.64	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33632135	33632359	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33632360	33632480	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33632481	33632558	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33632481	33632558	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33632559	33632717	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33632718	33632786	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33632718	33632786	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33632787	33632925	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33632926	33633006	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33632926	33633006	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33633007	33633086	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33633087	33633206	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33633087	33633206	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33633207	33634132	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33634133	33634249	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33634133	33634249	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33634250	33634372	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33634373	33634410	1	-	2	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33634373	33634410	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33634411	33634537	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33634538	33634610	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33634538	33634610	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33634611	33634795	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33634796	33634867	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33634796	33634867	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33634868	33635045	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635046	33635111	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635046	33635111	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635112	33635204	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635205	33635284	1	-	2	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635205	33635284	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635285	33635402	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635403	33635448	0.59	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635403	33635448	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635449	33635574	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635575	33635676	0.89	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635575	33635676	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635677	33635764	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635765	33635805	1	-	2	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635765	33635805	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635806	33635962	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635963	33636081	0.87	-	1	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635963	33636081	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33636082	33636331	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33636332	33636359	0.97	-	2	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33636332	33636359	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33636360	33636447	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33636448	33636586	0.66	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33636448	33636586	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33636587	33636665	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33636666	33636809	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33636666	33636809	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33636810	33636889	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33636890	33637000	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33636890	33637000	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637001	33637076	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637077	33637232	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637077	33637232	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637233	33637371	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637372	33637473	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637372	33637473	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637474	33637564	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637565	33637636	1	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637565	33637636	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637637	33637730	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637731	33637949	0.98	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637731	33637949	.	-	.	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	start_codon	33637947	33637949	.	-	0	transcript_id "Ledus.S1G415800.t3"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	transcript	33638464	33642311	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	stop_codon	33638461	33638463	.	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33638464	33638592	0.81	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33638464	33638592	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33638593	33638692	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33638693	33638859	1	-	2	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33638693	33638859	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33638860	33638943	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33638944	33639049	1	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33638944	33639049	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639050	33639134	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639135	33639172	1	-	2	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639135	33639172	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639173	33639318	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639319	33639406	1	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639319	33639406	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639407	33639498	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639499	33639552	1	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639499	33639552	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639553	33639647	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639648	33639756	1	-	1	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639648	33639756	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639757	33639851	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639852	33639934	1	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639852	33639934	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639935	33640041	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640042	33640104	1	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640042	33640104	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640105	33640206	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640207	33640269	1	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640207	33640269	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640270	33640403	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640404	33640502	1	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640404	33640502	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640503	33640597	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640598	33640657	0.99	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640598	33640657	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640658	33640765	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640766	33640824	0.98	-	2	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640766	33640824	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640825	33640934	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640935	33641049	1	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640935	33641049	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33641050	33641197	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33641198	33641367	1	-	2	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33641198	33641367	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33641368	33641518	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33641519	33641622	1	-	1	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33641519	33641622	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33641623	33641764	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33641765	33641819	0.56	-	2	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33641765	33641819	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33641820	33641907	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33641908	33642000	0.56	-	2	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33641908	33642000	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33642001	33642109	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33642110	33642311	0.9	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33642110	33642311	.	-	.	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	start_codon	33642309	33642311	.	-	0	transcript_id "Ledus.S1G415800.t4"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	transcript	33634644	33641992	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	stop_codon	33634641	33634643	.	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33634644	33634700	0.9	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33634644	33634700	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33634701	33634795	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33634796	33634867	0.93	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33634796	33634867	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33634868	33635045	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635046	33635111	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635046	33635111	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635112	33635204	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635205	33635284	1	-	2	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635205	33635284	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635285	33635402	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635403	33635448	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635403	33635448	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635449	33635764	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635765	33635805	1	-	2	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635765	33635805	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33635806	33635962	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33635963	33636081	0.76	-	1	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33635963	33636081	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33636082	33636331	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33636332	33636359	0.96	-	2	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33636332	33636359	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33636360	33636447	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33636448	33636586	0.72	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33636448	33636586	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33636587	33636665	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33636666	33636809	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33636666	33636809	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33636810	33636889	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33636890	33637000	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33636890	33637000	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637001	33637076	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637077	33637232	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637077	33637232	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637233	33637371	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637372	33637473	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637372	33637473	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637474	33637564	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637565	33637636	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637565	33637636	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637637	33637730	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637731	33637823	0.62	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637731	33637823	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33637824	33637972	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33637973	33638154	0.51	-	2	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33637973	33638154	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33638155	33638390	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33638391	33638436	0.57	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33638391	33638436	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33638437	33638529	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33638530	33638592	0.73	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33638530	33638592	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33638593	33638692	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33638693	33638859	1	-	2	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33638693	33638859	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33638860	33638943	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33638944	33639049	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33638944	33639049	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639050	33639134	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639135	33639172	1	-	2	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639135	33639172	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639173	33639318	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639319	33639406	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639319	33639406	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639407	33639498	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639499	33639552	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639499	33639552	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639553	33639647	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639648	33639756	1	-	1	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639648	33639756	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639757	33639851	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33639852	33639934	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33639852	33639934	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33639935	33640041	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640042	33640104	0.99	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640042	33640104	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640105	33640206	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640207	33640269	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640207	33640269	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640270	33640403	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640404	33640502	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640404	33640502	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640503	33640597	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640598	33640657	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640598	33640657	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640658	33640765	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640766	33640824	0.98	-	2	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640766	33640824	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33640825	33640934	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33640935	33641049	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33640935	33641049	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33641050	33641197	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33641198	33641367	1	-	2	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33641198	33641367	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33641368	33641518	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33641519	33641622	1	-	1	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33641519	33641622	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33641623	33641724	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33641725	33641819	1	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33641725	33641819	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	intron	33641820	33641917	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	CDS	33641918	33641992	0.99	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	exon	33641918	33641992	.	-	.	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
Ledus.S1	AUGUSTUS	start_codon	33641990	33641992	.	-	0	transcript_id "Ledus.S1G415800.t5"; gene_id "Ledus.S1G415800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1413.t1 is derived from g8274.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9943248	9949459	.	-	.	Ledus.S2G129500
Ledus.S2	AUGUSTUS	transcript	9943248	9949459	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	stop_codon	9943245	9943247	.	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9943248	9943454	1	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9943248	9943454	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9943455	9943541	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9943542	9943880	0.99	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9943542	9943880	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9943881	9943968	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9943969	9944169	1	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9943969	9944169	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9944170	9944298	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9944299	9944418	1	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9944299	9944418	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9944419	9944542	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9944543	9944707	0.96	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9944543	9944707	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9944708	9944895	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9944896	9945144	1	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9944896	9945144	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9945145	9945246	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9945247	9945529	1	-	1	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9945247	9945529	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9945530	9945665	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9945666	9945841	1	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9945666	9945841	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9945842	9945970	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9945971	9946297	0.95	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9945971	9946297	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9946298	9946408	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9946409	9946456	0.99	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9946409	9946456	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9946457	9946549	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9946550	9946821	0.99	-	2	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9946550	9946821	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9946822	9947036	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9947037	9947129	1	-	2	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9947037	9947129	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9947130	9947240	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9947241	9947649	1	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9947241	9947649	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9947650	9947788	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9947789	9948066	1	-	2	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9947789	9948066	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9948067	9948202	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9948203	9948374	1	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9948203	9948374	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9948375	9948450	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9948451	9948528	1	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9948451	9948528	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9948529	9948641	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9948642	9948704	1	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9948642	9948704	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9948705	9948845	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9948846	9948941	1	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9948846	9948941	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	intron	9948942	9949333	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	CDS	9949334	9949459	0.82	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	exon	9949334	9949459	.	-	.	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
Ledus.S2	AUGUSTUS	start_codon	9949457	9949459	.	-	0	transcript_id "Ledus.S2G129500.t1"; gene_id "Ledus.S2G129500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12750.t1 is derived from g6372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14212425	14215454	.	+	.	Ledus.S4G190600
Ledus.S4	AUGUSTUS	transcript	14212425	14215454	.	+	.	transcript_id "Ledus.S4G190600.t1"; gene_id "Ledus.S4G190600"
Ledus.S4	AUGUSTUS	start_codon	14212425	14212427	.	+	0	transcript_id "Ledus.S4G190600.t1"; gene_id "Ledus.S4G190600"
Ledus.S4	AUGUSTUS	CDS	14212425	14212668	0.79	+	0	transcript_id "Ledus.S4G190600.t1"; gene_id "Ledus.S4G190600"
Ledus.S4	AUGUSTUS	exon	14212425	14212668	.	+	.	transcript_id "Ledus.S4G190600.t1"; gene_id "Ledus.S4G190600"
Ledus.S4	AUGUSTUS	intron	14212669	14212749	.	+	.	transcript_id "Ledus.S4G190600.t1"; gene_id "Ledus.S4G190600"
Ledus.S4	AUGUSTUS	CDS	14212750	14212823	1	+	2	transcript_id "Ledus.S4G190600.t1"; gene_id "Ledus.S4G190600"
Ledus.S4	AUGUSTUS	exon	14212750	14212823	.	+	.	transcript_id "Ledus.S4G190600.t1"; gene_id "Ledus.S4G190600"
Ledus.S4	AUGUSTUS	intron	14212824	14212904	.	+	.	transcript_id "Ledus.S4G190600.t1"; gene_id "Ledus.S4G190600"
Ledus.S4	AUGUSTUS	CDS	14212905	14215454	1	+	0	transcript_id "Ledus.S4G190600.t1"; gene_id "Ledus.S4G190600"
Ledus.S4	AUGUSTUS	exon	14212905	14215454	.	+	.	transcript_id "Ledus.S4G190600.t1"; gene_id "Ledus.S4G190600"
Ledus.S4	AUGUSTUS	stop_codon	14215455	14215457	.	+	0	transcript_id "Ledus.S4G190600.t1"; gene_id "Ledus.S4G190600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5371.t1 is derived from g2810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23850002	23851198	.	+	.	Ledus.S1G279200
Ledus.S1	AUGUSTUS	transcript	23850002	23851198	.	+	.	transcript_id "Ledus.S1G279200.t1"; gene_id "Ledus.S1G279200"
Ledus.S1	AUGUSTUS	start_codon	23850002	23850004	.	+	0	transcript_id "Ledus.S1G279200.t1"; gene_id "Ledus.S1G279200"
Ledus.S1	AUGUSTUS	CDS	23850002	23850126	0.12	+	0	transcript_id "Ledus.S1G279200.t1"; gene_id "Ledus.S1G279200"
Ledus.S1	AUGUSTUS	exon	23850002	23850126	.	+	.	transcript_id "Ledus.S1G279200.t1"; gene_id "Ledus.S1G279200"
Ledus.S1	AUGUSTUS	intron	23850127	23850363	.	+	.	transcript_id "Ledus.S1G279200.t1"; gene_id "Ledus.S1G279200"
Ledus.S1	AUGUSTUS	CDS	23850364	23851198	0.22	+	1	transcript_id "Ledus.S1G279200.t1"; gene_id "Ledus.S1G279200"
Ledus.S1	AUGUSTUS	exon	23850364	23851198	.	+	.	transcript_id "Ledus.S1G279200.t1"; gene_id "Ledus.S1G279200"
Ledus.S1	AUGUSTUS	stop_codon	23851199	23851201	.	+	0	transcript_id "Ledus.S1G279200.t1"; gene_id "Ledus.S1G279200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg12411.t1 is derived from g6032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11863215	11865044	.	-	.	Ledus.S4G156700
Ledus.S4	AUGUSTUS	transcript	11863215	11865044	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	stop_codon	11863212	11863214	.	-	0	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11863215	11863699	1	-	2	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11863215	11863699	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11863700	11863766	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11863767	11863840	1	-	1	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11863767	11863840	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11863841	11863932	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11863933	11864036	1	-	0	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11863933	11864036	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864037	11864130	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864131	11864171	1	-	2	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864131	11864171	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864172	11864257	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864258	11864399	1	-	0	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864258	11864399	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864400	11864479	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864480	11864752	0.36	-	0	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864480	11864752	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864753	11864978	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864979	11865044	0.43	-	0	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864979	11865044	.	-	.	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	start_codon	11865042	11865044	.	-	0	transcript_id "Ledus.S4G156700.t1"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	transcript	11863215	11865044	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	stop_codon	11863212	11863214	.	-	0	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11863215	11863699	1	-	2	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11863215	11863699	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11863700	11863766	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11863767	11863840	1	-	1	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11863767	11863840	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11863841	11863932	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11863933	11864036	1	-	0	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11863933	11864036	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864037	11864130	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864131	11864183	1	-	2	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864131	11864183	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864184	11864257	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864258	11864399	1	-	0	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864258	11864399	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864400	11864479	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864480	11864546	0.64	-	1	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864480	11864546	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864547	11864646	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864647	11864752	0.43	-	2	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864647	11864752	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864753	11864842	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864843	11865044	0.42	-	0	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864843	11865044	.	-	.	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	start_codon	11865042	11865044	.	-	0	transcript_id "Ledus.S4G156700.t2"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	transcript	11863215	11865044	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	stop_codon	11863212	11863214	.	-	0	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11863215	11863699	1	-	2	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11863215	11863699	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11863700	11863766	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11863767	11863840	1	-	1	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11863767	11863840	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11863841	11863932	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11863933	11864036	1	-	0	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11863933	11864036	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864037	11864130	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864131	11864171	1	-	2	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864131	11864171	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864172	11864257	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864258	11864399	1	-	0	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864258	11864399	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864400	11864479	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864480	11864546	0.58	-	1	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864480	11864546	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864547	11864646	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864647	11864752	0.38	-	2	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864647	11864752	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	intron	11864753	11864842	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	CDS	11864843	11865044	0.34	-	0	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	exon	11864843	11865044	.	-	.	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
Ledus.S4	AUGUSTUS	start_codon	11865042	11865044	.	-	0	transcript_id "Ledus.S4G156700.t3"; gene_id "Ledus.S4G156700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg776.t1 is derived from g7637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4913836	4916294	.	-	.	Ledus.S2G065800
Ledus.S2	AUGUSTUS	transcript	4913836	4916294	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	stop_codon	4913833	4913835	.	-	0	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	CDS	4913836	4913922	0.98	-	0	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	exon	4913836	4913922	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	intron	4913923	4914109	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	CDS	4914110	4914163	1	-	0	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	exon	4914110	4914163	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	intron	4914164	4914334	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	CDS	4914335	4914422	1	-	1	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	exon	4914335	4914422	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	intron	4914423	4914538	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	CDS	4914539	4914702	1	-	0	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	exon	4914539	4914702	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	intron	4914703	4914808	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	CDS	4914809	4914982	0.66	-	0	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	exon	4914809	4914982	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	intron	4914983	4915238	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	CDS	4915239	4915359	1	-	1	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	exon	4915239	4915359	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	intron	4915360	4915726	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	CDS	4915727	4915911	1	-	0	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	exon	4915727	4915911	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	intron	4915912	4916285	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	CDS	4916286	4916294	1	-	0	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	exon	4916286	4916294	.	-	.	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
Ledus.S2	AUGUSTUS	start_codon	4916292	4916294	.	-	0	transcript_id "Ledus.S2G065800.t1"; gene_id "Ledus.S2G065800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6873.t1 is derived from g4317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34895955	34901214	.	+	.	Ledus.S1G429400
Ledus.S1	AUGUSTUS	transcript	34895955	34901214	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	start_codon	34895955	34895957	.	+	0	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34895955	34896782	0.33	+	0	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34895955	34896782	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34896783	34897005	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34897006	34897143	1	+	0	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34897006	34897143	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34897144	34897318	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34897319	34897552	0.99	+	0	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34897319	34897552	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34897553	34898067	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34898068	34898213	0.95	+	0	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34898068	34898213	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34898214	34899696	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34899697	34899847	0.99	+	1	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34899697	34899847	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34899848	34899968	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34899969	34900100	0.98	+	0	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34899969	34900100	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34900101	34900222	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34900223	34900363	1	+	0	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34900223	34900363	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34900364	34900530	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34900531	34900734	1	+	0	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34900531	34900734	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34900735	34900816	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34900817	34901020	1	+	0	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34900817	34901020	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34901021	34901145	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34901146	34901214	1	+	0	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34901146	34901214	.	+	.	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	stop_codon	34901215	34901217	.	+	0	transcript_id "Ledus.S1G429400.t1"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	transcript	34895955	34901214	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	start_codon	34895955	34895957	.	+	0	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34895955	34896782	0.42	+	0	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34895955	34896782	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34896783	34897005	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34897006	34897143	1	+	0	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34897006	34897143	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34897144	34897318	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34897319	34897552	1	+	0	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34897319	34897552	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34897553	34898067	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34898068	34898213	1	+	0	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34898068	34898213	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34898214	34898409	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34898410	34898524	1	+	1	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34898410	34898524	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34898525	34898715	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34898716	34898823	0.92	+	0	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34898716	34898823	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34898824	34899696	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34899697	34899782	0.51	+	0	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34899697	34899782	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34899783	34899919	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34899920	34900100	0.73	+	1	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34899920	34900100	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34900101	34900222	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34900223	34900363	1	+	0	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34900223	34900363	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34900364	34900530	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34900531	34900734	0.97	+	0	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34900531	34900734	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34900735	34900816	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34900817	34901020	1	+	0	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34900817	34901020	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	intron	34901021	34901145	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	CDS	34901146	34901214	1	+	0	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	exon	34901146	34901214	.	+	.	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
Ledus.S1	AUGUSTUS	stop_codon	34901215	34901217	.	+	0	transcript_id "Ledus.S1G429400.t2"; gene_id "Ledus.S1G429400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9082.t1 is derived from g10112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4433150	4435486	.	-	.	Ledus.S3G055900
Ledus.S3	AUGUSTUS	transcript	4433150	4435486	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	stop_codon	4433147	4433149	.	-	0	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	CDS	4433150	4433389	1	-	0	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	exon	4433150	4433389	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	intron	4433390	4433504	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	CDS	4433505	4433573	1	-	0	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	exon	4433505	4433573	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	intron	4433574	4433701	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	CDS	4433702	4433792	1	-	1	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	exon	4433702	4433792	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	intron	4433793	4433902	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	CDS	4433903	4433998	0.99	-	1	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	exon	4433903	4433998	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	intron	4433999	4434182	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	CDS	4434183	4434296	1	-	1	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	exon	4434183	4434296	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	intron	4434297	4434403	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	CDS	4434404	4434522	0.79	-	0	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	exon	4434404	4434522	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	intron	4434523	4434612	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	CDS	4434613	4434718	0.48	-	1	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	exon	4434613	4434718	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	intron	4434719	4434810	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	CDS	4434811	4434834	0.35	-	1	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	exon	4434811	4434834	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	intron	4434835	4434964	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	CDS	4434965	4435103	0.61	-	2	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	exon	4434965	4435103	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	intron	4435104	4435410	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	CDS	4435411	4435486	0.8	-	0	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	exon	4435411	4435486	.	-	.	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
Ledus.S3	AUGUSTUS	start_codon	4435484	4435486	.	-	0	transcript_id "Ledus.S3G055900.t1"; gene_id "Ledus.S3G055900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7034.t1 is derived from g6565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	945404	946897	.	+	.	Ledus.C7G009500
Ledus.C7	AUGUSTUS	transcript	945404	946897	.	+	.	transcript_id "Ledus.C7G009500.t1"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	start_codon	945404	945406	.	+	0	transcript_id "Ledus.C7G009500.t1"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	CDS	945404	946146	0.93	+	0	transcript_id "Ledus.C7G009500.t1"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	exon	945404	946146	.	+	.	transcript_id "Ledus.C7G009500.t1"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	intron	946147	946230	.	+	.	transcript_id "Ledus.C7G009500.t1"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	CDS	946231	946897	0.97	+	1	transcript_id "Ledus.C7G009500.t1"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	exon	946231	946897	.	+	.	transcript_id "Ledus.C7G009500.t1"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	stop_codon	946898	946900	.	+	0	transcript_id "Ledus.C7G009500.t1"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	transcript	945497	946897	.	+	.	transcript_id "Ledus.C7G009500.t2"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	start_codon	945497	945499	.	+	0	transcript_id "Ledus.C7G009500.t2"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	CDS	945497	946146	0.94	+	0	transcript_id "Ledus.C7G009500.t2"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	exon	945497	946146	.	+	.	transcript_id "Ledus.C7G009500.t2"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	intron	946147	946230	.	+	.	transcript_id "Ledus.C7G009500.t2"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	CDS	946231	946897	0.95	+	1	transcript_id "Ledus.C7G009500.t2"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	exon	946231	946897	.	+	.	transcript_id "Ledus.C7G009500.t2"; gene_id "Ledus.C7G009500"
Ledus.C7	AUGUSTUS	stop_codon	946898	946900	.	+	0	transcript_id "Ledus.C7G009500.t2"; gene_id "Ledus.C7G009500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2414.t1 is derived from g9277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17986619	17986972	.	-	.	Ledus.S2G229600
Ledus.S2	AUGUSTUS	transcript	17986619	17986972	.	-	.	transcript_id "Ledus.S2G229600.t1"; gene_id "Ledus.S2G229600"
Ledus.S2	AUGUSTUS	stop_codon	17986616	17986618	.	-	0	transcript_id "Ledus.S2G229600.t1"; gene_id "Ledus.S2G229600"
Ledus.S2	AUGUSTUS	CDS	17986619	17986972	0.53	-	0	transcript_id "Ledus.S2G229600.t1"; gene_id "Ledus.S2G229600"
Ledus.S2	AUGUSTUS	exon	17986619	17986972	.	-	.	transcript_id "Ledus.S2G229600.t1"; gene_id "Ledus.S2G229600"
Ledus.S2	AUGUSTUS	start_codon	17986970	17986972	.	-	0	transcript_id "Ledus.S2G229600.t1"; gene_id "Ledus.S2G229600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2466.t1 is derived from g9329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18325017	18326291	.	+	.	Ledus.S2G234800
Ledus.S2	AUGUSTUS	transcript	18325017	18326291	.	+	.	transcript_id "Ledus.S2G234800.t1"; gene_id "Ledus.S2G234800"
Ledus.S2	AUGUSTUS	start_codon	18325017	18325019	.	+	0	transcript_id "Ledus.S2G234800.t1"; gene_id "Ledus.S2G234800"
Ledus.S2	AUGUSTUS	CDS	18325017	18325310	0.95	+	0	transcript_id "Ledus.S2G234800.t1"; gene_id "Ledus.S2G234800"
Ledus.S2	AUGUSTUS	exon	18325017	18325310	.	+	.	transcript_id "Ledus.S2G234800.t1"; gene_id "Ledus.S2G234800"
Ledus.S2	AUGUSTUS	intron	18325311	18325400	.	+	.	transcript_id "Ledus.S2G234800.t1"; gene_id "Ledus.S2G234800"
Ledus.S2	AUGUSTUS	CDS	18325401	18325926	1	+	0	transcript_id "Ledus.S2G234800.t1"; gene_id "Ledus.S2G234800"
Ledus.S2	AUGUSTUS	exon	18325401	18325926	.	+	.	transcript_id "Ledus.S2G234800.t1"; gene_id "Ledus.S2G234800"
Ledus.S2	AUGUSTUS	intron	18325927	18326040	.	+	.	transcript_id "Ledus.S2G234800.t1"; gene_id "Ledus.S2G234800"
Ledus.S2	AUGUSTUS	CDS	18326041	18326291	0.99	+	2	transcript_id "Ledus.S2G234800.t1"; gene_id "Ledus.S2G234800"
Ledus.S2	AUGUSTUS	exon	18326041	18326291	.	+	.	transcript_id "Ledus.S2G234800.t1"; gene_id "Ledus.S2G234800"
Ledus.S2	AUGUSTUS	stop_codon	18326292	18326294	.	+	0	transcript_id "Ledus.S2G234800.t1"; gene_id "Ledus.S2G234800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7225.t1 is derived from g11896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	117163	119356	.	-	.	Ledus.S5G000300
Ledus.S5	AUGUSTUS	transcript	117163	119356	.	-	.	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	stop_codon	117160	117162	.	-	0	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	CDS	117163	117405	0.98	-	0	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	exon	117163	117405	.	-	.	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	intron	117406	117490	.	-	.	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	CDS	117491	117878	0.98	-	1	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	exon	117491	117878	.	-	.	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	intron	117879	117994	.	-	.	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	CDS	117995	118396	0.88	-	1	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	exon	117995	118396	.	-	.	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	intron	118397	118618	.	-	.	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	CDS	118619	118968	0.88	-	0	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	exon	118619	118968	.	-	.	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	intron	118969	119128	.	-	.	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	CDS	119129	119356	0.86	-	0	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	exon	119129	119356	.	-	.	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
Ledus.S5	AUGUSTUS	start_codon	119354	119356	.	-	0	transcript_id "Ledus.S5G000300.t1"; gene_id "Ledus.S5G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11076.t1 is derived from g4694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1618493	1621153	.	+	.	Ledus.S4G023200
Ledus.S4	AUGUSTUS	transcript	1618493	1621153	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	start_codon	1618493	1618495	.	+	0	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	CDS	1618493	1618837	1	+	0	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	exon	1618493	1618837	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	intron	1618838	1618925	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	CDS	1618926	1619027	1	+	0	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	exon	1618926	1619027	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	intron	1619028	1619529	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	CDS	1619530	1619659	1	+	0	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	exon	1619530	1619659	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	intron	1619660	1619736	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	CDS	1619737	1619829	0.86	+	2	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	exon	1619737	1619829	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	intron	1619830	1619944	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	CDS	1619945	1620033	0.88	+	2	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	exon	1619945	1620033	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	intron	1620034	1620124	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	CDS	1620125	1620205	0.93	+	0	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	exon	1620125	1620205	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	intron	1620206	1620267	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	CDS	1620268	1620402	0.7	+	0	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	exon	1620268	1620402	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	intron	1620403	1620493	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	CDS	1620494	1620583	1	+	0	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	exon	1620494	1620583	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	intron	1620584	1620680	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	CDS	1620681	1620731	1	+	0	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	exon	1620681	1620731	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	intron	1620732	1620823	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	CDS	1620824	1620870	1	+	0	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	exon	1620824	1620870	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	intron	1620871	1620955	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	CDS	1620956	1621013	1	+	1	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	exon	1620956	1621013	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	intron	1621014	1621099	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	CDS	1621100	1621153	1	+	0	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	exon	1621100	1621153	.	+	.	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
Ledus.S4	AUGUSTUS	stop_codon	1621154	1621156	.	+	0	transcript_id "Ledus.S4G023200.t1"; gene_id "Ledus.S4G023200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4690.t1 is derived from g2128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19041858	19042325	.	+	.	Ledus.S1G211100
Ledus.S1	AUGUSTUS	transcript	19041858	19042325	.	+	.	transcript_id "Ledus.S1G211100.t1"; gene_id "Ledus.S1G211100"
Ledus.S1	AUGUSTUS	start_codon	19041858	19041860	.	+	0	transcript_id "Ledus.S1G211100.t1"; gene_id "Ledus.S1G211100"
Ledus.S1	AUGUSTUS	CDS	19041858	19042325	0.59	+	0	transcript_id "Ledus.S1G211100.t1"; gene_id "Ledus.S1G211100"
Ledus.S1	AUGUSTUS	exon	19041858	19042325	.	+	.	transcript_id "Ledus.S1G211100.t1"; gene_id "Ledus.S1G211100"
Ledus.S1	AUGUSTUS	stop_codon	19042326	19042328	.	+	0	transcript_id "Ledus.S1G211100.t1"; gene_id "Ledus.S1G211100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7238.t1 is derived from g11909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	201732	201944	.	-	.	Ledus.S5G001600
Ledus.S5	AUGUSTUS	transcript	201732	201944	.	-	.	transcript_id "Ledus.S5G001600.t1"; gene_id "Ledus.S5G001600"
Ledus.S5	AUGUSTUS	stop_codon	201729	201731	.	-	0	transcript_id "Ledus.S5G001600.t1"; gene_id "Ledus.S5G001600"
Ledus.S5	AUGUSTUS	CDS	201732	201944	0.34	-	0	transcript_id "Ledus.S5G001600.t1"; gene_id "Ledus.S5G001600"
Ledus.S5	AUGUSTUS	exon	201732	201944	.	-	.	transcript_id "Ledus.S5G001600.t1"; gene_id "Ledus.S5G001600"
Ledus.S5	AUGUSTUS	start_codon	201942	201944	.	-	0	transcript_id "Ledus.S5G001600.t1"; gene_id "Ledus.S5G001600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12127.t1 is derived from g5746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9668461	9670159	.	-	.	Ledus.S4G128300
Ledus.S4	AUGUSTUS	transcript	9668461	9670159	.	-	.	transcript_id "Ledus.S4G128300.t1"; gene_id "Ledus.S4G128300"
Ledus.S4	AUGUSTUS	stop_codon	9668458	9668460	.	-	0	transcript_id "Ledus.S4G128300.t1"; gene_id "Ledus.S4G128300"
Ledus.S4	AUGUSTUS	CDS	9668461	9669537	0.99	-	0	transcript_id "Ledus.S4G128300.t1"; gene_id "Ledus.S4G128300"
Ledus.S4	AUGUSTUS	exon	9668461	9669537	.	-	.	transcript_id "Ledus.S4G128300.t1"; gene_id "Ledus.S4G128300"
Ledus.S4	AUGUSTUS	intron	9669538	9669682	.	-	.	transcript_id "Ledus.S4G128300.t1"; gene_id "Ledus.S4G128300"
Ledus.S4	AUGUSTUS	CDS	9669683	9670159	0.48	-	0	transcript_id "Ledus.S4G128300.t1"; gene_id "Ledus.S4G128300"
Ledus.S4	AUGUSTUS	exon	9669683	9670159	.	-	.	transcript_id "Ledus.S4G128300.t1"; gene_id "Ledus.S4G128300"
Ledus.S4	AUGUSTUS	start_codon	9670157	9670159	.	-	0	transcript_id "Ledus.S4G128300.t1"; gene_id "Ledus.S4G128300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2557.t1 is derived from g9420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18957715	18958716	.	+	.	Ledus.S2G243900
Ledus.S2	AUGUSTUS	transcript	18957715	18958716	.	+	.	transcript_id "Ledus.S2G243900.t1"; gene_id "Ledus.S2G243900"
Ledus.S2	AUGUSTUS	start_codon	18957715	18957717	.	+	0	transcript_id "Ledus.S2G243900.t1"; gene_id "Ledus.S2G243900"
Ledus.S2	AUGUSTUS	CDS	18957715	18958716	0.6	+	0	transcript_id "Ledus.S2G243900.t1"; gene_id "Ledus.S2G243900"
Ledus.S2	AUGUSTUS	exon	18957715	18958716	.	+	.	transcript_id "Ledus.S2G243900.t1"; gene_id "Ledus.S2G243900"
Ledus.S2	AUGUSTUS	stop_codon	18958717	18958719	.	+	0	transcript_id "Ledus.S2G243900.t1"; gene_id "Ledus.S2G243900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4520.t1 is derived from g1957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17499703	17500368	.	-	.	Ledus.S1G194100
Ledus.S1	AUGUSTUS	transcript	17499703	17500368	.	-	.	transcript_id "Ledus.S1G194100.t1"; gene_id "Ledus.S1G194100"
Ledus.S1	AUGUSTUS	stop_codon	17499700	17499702	.	-	0	transcript_id "Ledus.S1G194100.t1"; gene_id "Ledus.S1G194100"
Ledus.S1	AUGUSTUS	CDS	17499703	17500368	0.77	-	0	transcript_id "Ledus.S1G194100.t1"; gene_id "Ledus.S1G194100"
Ledus.S1	AUGUSTUS	exon	17499703	17500368	.	-	.	transcript_id "Ledus.S1G194100.t1"; gene_id "Ledus.S1G194100"
Ledus.S1	AUGUSTUS	start_codon	17500366	17500368	.	-	0	transcript_id "Ledus.S1G194100.t1"; gene_id "Ledus.S1G194100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1371.t1 is derived from g8232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9552363	9554592	.	+	.	Ledus.S2G125300
Ledus.S2	AUGUSTUS	transcript	9552363	9554592	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	start_codon	9552363	9552365	.	+	0	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	CDS	9552363	9552927	1	+	0	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	exon	9552363	9552927	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	intron	9552928	9553020	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	CDS	9553021	9553161	1	+	2	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	exon	9553021	9553161	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	intron	9553162	9553424	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	CDS	9553425	9553574	1	+	2	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	exon	9553425	9553574	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	intron	9553575	9553845	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	CDS	9553846	9553964	1	+	2	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	exon	9553846	9553964	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	intron	9553965	9554160	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	CDS	9554161	9554245	1	+	0	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	exon	9554161	9554245	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	intron	9554246	9554343	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	CDS	9554344	9554390	1	+	2	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	exon	9554344	9554390	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	intron	9554391	9554487	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	CDS	9554488	9554592	0.99	+	0	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	exon	9554488	9554592	.	+	.	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
Ledus.S2	AUGUSTUS	stop_codon	9554593	9554595	.	+	0	transcript_id "Ledus.S2G125300.t1"; gene_id "Ledus.S2G125300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6163.t1 is derived from g3606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29335423	29338400	.	+	.	Ledus.S1G358400
Ledus.S1	AUGUSTUS	transcript	29335423	29338400	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	start_codon	29335423	29335425	.	+	0	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	CDS	29335423	29336265	0.49	+	0	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	exon	29335423	29336265	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	intron	29336266	29336439	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	CDS	29336440	29336626	0.91	+	0	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	exon	29336440	29336626	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	intron	29336627	29336734	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	CDS	29336735	29337441	1	+	2	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	exon	29336735	29337441	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	intron	29337442	29337567	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	CDS	29337568	29337707	1	+	0	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	exon	29337568	29337707	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	intron	29337708	29337826	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	CDS	29337827	29337968	1	+	1	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	exon	29337827	29337968	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	intron	29337969	29338140	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	CDS	29338141	29338209	1	+	0	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	exon	29338141	29338209	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	intron	29338210	29338307	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	CDS	29338308	29338400	0.98	+	0	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	exon	29338308	29338400	.	+	.	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
Ledus.S1	AUGUSTUS	stop_codon	29338401	29338403	.	+	0	transcript_id "Ledus.S1G358400.t1"; gene_id "Ledus.S1G358400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12841.t1 is derived from g11875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	88557	90380	.	-	.	Ledus.C11G000500
Ledus.C11	AUGUSTUS	transcript	88557	90380	.	-	.	transcript_id "Ledus.C11G000500.t1"; gene_id "Ledus.C11G000500"
Ledus.C11	AUGUSTUS	stop_codon	88554	88556	.	-	0	transcript_id "Ledus.C11G000500.t1"; gene_id "Ledus.C11G000500"
Ledus.C11	AUGUSTUS	CDS	88557	90380	0.62	-	0	transcript_id "Ledus.C11G000500.t1"; gene_id "Ledus.C11G000500"
Ledus.C11	AUGUSTUS	exon	88557	90380	.	-	.	transcript_id "Ledus.C11G000500.t1"; gene_id "Ledus.C11G000500"
Ledus.C11	AUGUSTUS	start_codon	90378	90380	.	-	0	transcript_id "Ledus.C11G000500.t1"; gene_id "Ledus.C11G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11541.t1 is derived from g5159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5191119	5193032	.	-	.	Ledus.S4G069700
Ledus.S4	AUGUSTUS	transcript	5191119	5193032	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	stop_codon	5191116	5191118	.	-	0	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	CDS	5191119	5191123	1	-	2	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	exon	5191119	5191123	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	intron	5191124	5191299	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	CDS	5191300	5191334	0.9	-	1	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	exon	5191300	5191334	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	intron	5191335	5191450	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	CDS	5191451	5191500	0.84	-	0	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	exon	5191451	5191500	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	intron	5191501	5191595	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	CDS	5191596	5191685	1	-	0	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	exon	5191596	5191685	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	intron	5191686	5191814	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	CDS	5191815	5191934	1	-	0	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	exon	5191815	5191934	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	intron	5191935	5192102	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	CDS	5192103	5192207	1	-	0	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	exon	5192103	5192207	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	intron	5192208	5192294	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	CDS	5192295	5192363	1	-	0	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	exon	5192295	5192363	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	intron	5192364	5192528	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	CDS	5192529	5193032	0.92	-	0	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	exon	5192529	5193032	.	-	.	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
Ledus.S4	AUGUSTUS	start_codon	5193030	5193032	.	-	0	transcript_id "Ledus.S4G069700.t1"; gene_id "Ledus.S4G069700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10010.t1 is derived from g11040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11856000	11856622	.	+	.	Ledus.S3G148700
Ledus.S3	AUGUSTUS	transcript	11856000	11856622	.	+	.	transcript_id "Ledus.S3G148700.t1"; gene_id "Ledus.S3G148700"
Ledus.S3	AUGUSTUS	start_codon	11856000	11856002	.	+	0	transcript_id "Ledus.S3G148700.t1"; gene_id "Ledus.S3G148700"
Ledus.S3	AUGUSTUS	CDS	11856000	11856030	0.98	+	0	transcript_id "Ledus.S3G148700.t1"; gene_id "Ledus.S3G148700"
Ledus.S3	AUGUSTUS	exon	11856000	11856030	.	+	.	transcript_id "Ledus.S3G148700.t1"; gene_id "Ledus.S3G148700"
Ledus.S3	AUGUSTUS	intron	11856031	11856210	.	+	.	transcript_id "Ledus.S3G148700.t1"; gene_id "Ledus.S3G148700"
Ledus.S3	AUGUSTUS	CDS	11856211	11856354	0.69	+	2	transcript_id "Ledus.S3G148700.t1"; gene_id "Ledus.S3G148700"
Ledus.S3	AUGUSTUS	exon	11856211	11856354	.	+	.	transcript_id "Ledus.S3G148700.t1"; gene_id "Ledus.S3G148700"
Ledus.S3	AUGUSTUS	intron	11856355	11856593	.	+	.	transcript_id "Ledus.S3G148700.t1"; gene_id "Ledus.S3G148700"
Ledus.S3	AUGUSTUS	CDS	11856594	11856622	0.79	+	2	transcript_id "Ledus.S3G148700.t1"; gene_id "Ledus.S3G148700"
Ledus.S3	AUGUSTUS	exon	11856594	11856622	.	+	.	transcript_id "Ledus.S3G148700.t1"; gene_id "Ledus.S3G148700"
Ledus.S3	AUGUSTUS	stop_codon	11856623	11856625	.	+	0	transcript_id "Ledus.S3G148700.t1"; gene_id "Ledus.S3G148700"
# This transcript jg1207.t2 is derived from g8068.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1208.t1 is derived from g8069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8605372	8605986	.	+	.	Ledus.S2G109000
Ledus.S2	AUGUSTUS	transcript	8605372	8605986	.	+	.	transcript_id "Ledus.S2G109000.t1"; gene_id "Ledus.S2G109000"
Ledus.S2	AUGUSTUS	start_codon	8605372	8605374	.	+	0	transcript_id "Ledus.S2G109000.t1"; gene_id "Ledus.S2G109000"
Ledus.S2	AUGUSTUS	CDS	8605372	8605986	0.91	+	0	transcript_id "Ledus.S2G109000.t1"; gene_id "Ledus.S2G109000"
Ledus.S2	AUGUSTUS	exon	8605372	8605986	.	+	.	transcript_id "Ledus.S2G109000.t1"; gene_id "Ledus.S2G109000"
Ledus.S2	AUGUSTUS	stop_codon	8605987	8605989	.	+	0	transcript_id "Ledus.S2G109000.t1"; gene_id "Ledus.S2G109000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1864.t1 is derived from g8727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13002203	13003646	.	-	.	Ledus.S2G174600
Ledus.S2	AUGUSTUS	transcript	13002203	13003646	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	stop_codon	13002200	13002202	.	-	0	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	CDS	13002203	13002262	1	-	0	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	exon	13002203	13002262	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	intron	13002263	13002357	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	CDS	13002358	13002453	1	-	0	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	exon	13002358	13002453	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	intron	13002454	13002552	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	CDS	13002553	13002627	1	-	0	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	exon	13002553	13002627	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	intron	13002628	13002718	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	CDS	13002719	13002821	1	-	1	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	exon	13002719	13002821	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	intron	13002822	13002930	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	CDS	13002931	13003023	1	-	1	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	exon	13002931	13003023	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	intron	13003024	13003088	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	CDS	13003089	13003201	1	-	0	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	exon	13003089	13003201	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	intron	13003202	13003288	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	CDS	13003289	13003432	1	-	0	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	exon	13003289	13003432	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	intron	13003433	13003517	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	CDS	13003518	13003646	1	-	0	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	exon	13003518	13003646	.	-	.	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
Ledus.S2	AUGUSTUS	start_codon	13003644	13003646	.	-	0	transcript_id "Ledus.S2G174600.t1"; gene_id "Ledus.S2G174600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2826.t1 is derived from g260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3981634	3984700	.	-	.	Ledus.S1G024700
Ledus.S1	AUGUSTUS	transcript	3981634	3984700	.	-	.	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	stop_codon	3981631	3981633	.	-	0	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	CDS	3981634	3983054	0.81	-	2	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	exon	3981634	3983054	.	-	.	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	intron	3983055	3983139	.	-	.	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	CDS	3983140	3983288	1	-	1	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	exon	3983140	3983288	.	-	.	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	intron	3983289	3983384	.	-	.	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	CDS	3983385	3983554	1	-	0	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	exon	3983385	3983554	.	-	.	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	intron	3983555	3983651	.	-	.	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	CDS	3983652	3983704	1	-	2	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	exon	3983652	3983704	.	-	.	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	intron	3983705	3983805	.	-	.	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	CDS	3983806	3984700	0.69	-	0	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	exon	3983806	3984700	.	-	.	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
Ledus.S1	AUGUSTUS	start_codon	3984698	3984700	.	-	0	transcript_id "Ledus.S1G024700.t1"; gene_id "Ledus.S1G024700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9037.t1 is derived from g10067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3999318	3999665	.	-	.	Ledus.S3G051400
Ledus.S3	AUGUSTUS	transcript	3999318	3999665	.	-	.	transcript_id "Ledus.S3G051400.t1"; gene_id "Ledus.S3G051400"
Ledus.S3	AUGUSTUS	stop_codon	3999315	3999317	.	-	0	transcript_id "Ledus.S3G051400.t1"; gene_id "Ledus.S3G051400"
Ledus.S3	AUGUSTUS	CDS	3999318	3999665	0.77	-	0	transcript_id "Ledus.S3G051400.t1"; gene_id "Ledus.S3G051400"
Ledus.S3	AUGUSTUS	exon	3999318	3999665	.	-	.	transcript_id "Ledus.S3G051400.t1"; gene_id "Ledus.S3G051400"
Ledus.S3	AUGUSTUS	start_codon	3999663	3999665	.	-	0	transcript_id "Ledus.S3G051400.t1"; gene_id "Ledus.S3G051400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4863.t1 is derived from g2301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20425838	20427696	.	-	.	Ledus.S1G228400
Ledus.S1	AUGUSTUS	transcript	20425838	20427696	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	stop_codon	20425835	20425837	.	-	0	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	CDS	20425838	20426020	1	-	0	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	exon	20425838	20426020	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	intron	20426021	20426109	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	CDS	20426110	20426229	1	-	0	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	exon	20426110	20426229	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	intron	20426230	20426330	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	CDS	20426331	20426442	0.98	-	1	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	exon	20426331	20426442	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	intron	20426443	20426526	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	CDS	20426527	20426606	1	-	0	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	exon	20426527	20426606	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	intron	20426607	20426690	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	CDS	20426691	20426779	1	-	2	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	exon	20426691	20426779	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	intron	20426780	20426848	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	CDS	20426849	20426913	1	-	1	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	exon	20426849	20426913	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	intron	20426914	20426986	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	CDS	20426987	20427103	1	-	1	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	exon	20426987	20427103	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	intron	20427104	20427177	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	CDS	20427178	20427262	1	-	2	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	exon	20427178	20427262	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	intron	20427263	20427353	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	CDS	20427354	20427696	0.65	-	0	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	exon	20427354	20427696	.	-	.	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
Ledus.S1	AUGUSTUS	start_codon	20427694	20427696	.	-	0	transcript_id "Ledus.S1G228400.t1"; gene_id "Ledus.S1G228400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4620.t1 is derived from g2057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18322080	18323677	.	+	.	Ledus.S1G204100
Ledus.S1	AUGUSTUS	transcript	18322080	18323677	.	+	.	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	start_codon	18322080	18322082	.	+	0	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	CDS	18322080	18322216	0.9	+	0	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	exon	18322080	18322216	.	+	.	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	intron	18322217	18322449	.	+	.	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	CDS	18322450	18322585	1	+	1	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	exon	18322450	18322585	.	+	.	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	intron	18322586	18323032	.	+	.	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	CDS	18323033	18323081	1	+	0	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	exon	18323033	18323081	.	+	.	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	intron	18323082	18323261	.	+	.	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	CDS	18323262	18323324	1	+	2	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	exon	18323262	18323324	.	+	.	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	intron	18323325	18323438	.	+	.	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	CDS	18323439	18323503	1	+	2	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	exon	18323439	18323503	.	+	.	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	intron	18323504	18323590	.	+	.	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	CDS	18323591	18323677	1	+	0	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	exon	18323591	18323677	.	+	.	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
Ledus.S1	AUGUSTUS	stop_codon	18323678	18323680	.	+	0	transcript_id "Ledus.S1G204100.t1"; gene_id "Ledus.S1G204100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11178.t1 is derived from g4796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2404925	2406268	.	+	.	Ledus.S4G033400
Ledus.S4	AUGUSTUS	transcript	2404925	2406268	.	+	.	transcript_id "Ledus.S4G033400.t1"; gene_id "Ledus.S4G033400"
Ledus.S4	AUGUSTUS	start_codon	2404925	2404927	.	+	0	transcript_id "Ledus.S4G033400.t1"; gene_id "Ledus.S4G033400"
Ledus.S4	AUGUSTUS	CDS	2404925	2405804	0.88	+	0	transcript_id "Ledus.S4G033400.t1"; gene_id "Ledus.S4G033400"
Ledus.S4	AUGUSTUS	exon	2404925	2405804	.	+	.	transcript_id "Ledus.S4G033400.t1"; gene_id "Ledus.S4G033400"
Ledus.S4	AUGUSTUS	intron	2405805	2405873	.	+	.	transcript_id "Ledus.S4G033400.t1"; gene_id "Ledus.S4G033400"
Ledus.S4	AUGUSTUS	CDS	2405874	2406268	0.94	+	2	transcript_id "Ledus.S4G033400.t1"; gene_id "Ledus.S4G033400"
Ledus.S4	AUGUSTUS	exon	2405874	2406268	.	+	.	transcript_id "Ledus.S4G033400.t1"; gene_id "Ledus.S4G033400"
Ledus.S4	AUGUSTUS	stop_codon	2406269	2406271	.	+	0	transcript_id "Ledus.S4G033400.t1"; gene_id "Ledus.S4G033400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11167.t1 is derived from g4785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2338904	2340663	.	+	.	Ledus.S4G032300
Ledus.S4	AUGUSTUS	transcript	2338904	2340663	.	+	.	transcript_id "Ledus.S4G032300.t1"; gene_id "Ledus.S4G032300"
Ledus.S4	AUGUSTUS	start_codon	2338904	2338906	.	+	0	transcript_id "Ledus.S4G032300.t1"; gene_id "Ledus.S4G032300"
Ledus.S4	AUGUSTUS	CDS	2338904	2340174	0.93	+	0	transcript_id "Ledus.S4G032300.t1"; gene_id "Ledus.S4G032300"
Ledus.S4	AUGUSTUS	exon	2338904	2340174	.	+	.	transcript_id "Ledus.S4G032300.t1"; gene_id "Ledus.S4G032300"
Ledus.S4	AUGUSTUS	intron	2340175	2340257	.	+	.	transcript_id "Ledus.S4G032300.t1"; gene_id "Ledus.S4G032300"
Ledus.S4	AUGUSTUS	CDS	2340258	2340282	0.93	+	1	transcript_id "Ledus.S4G032300.t1"; gene_id "Ledus.S4G032300"
Ledus.S4	AUGUSTUS	exon	2340258	2340282	.	+	.	transcript_id "Ledus.S4G032300.t1"; gene_id "Ledus.S4G032300"
Ledus.S4	AUGUSTUS	intron	2340283	2340471	.	+	.	transcript_id "Ledus.S4G032300.t1"; gene_id "Ledus.S4G032300"
Ledus.S4	AUGUSTUS	CDS	2340472	2340663	0.99	+	0	transcript_id "Ledus.S4G032300.t1"; gene_id "Ledus.S4G032300"
Ledus.S4	AUGUSTUS	exon	2340472	2340663	.	+	.	transcript_id "Ledus.S4G032300.t1"; gene_id "Ledus.S4G032300"
Ledus.S4	AUGUSTUS	stop_codon	2340664	2340666	.	+	0	transcript_id "Ledus.S4G032300.t1"; gene_id "Ledus.S4G032300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7334.t1 is derived from g12005.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1241653	1243980	.	-	.	Ledus.S5G011200
Ledus.S5	AUGUSTUS	transcript	1241653	1243374	.	-	.	transcript_id "Ledus.S5G011200.t1"; gene_id "Ledus.S5G011200"
Ledus.S5	AUGUSTUS	stop_codon	1241650	1241652	.	-	0	transcript_id "Ledus.S5G011200.t1"; gene_id "Ledus.S5G011200"
Ledus.S5	AUGUSTUS	CDS	1241653	1243374	1	-	0	transcript_id "Ledus.S5G011200.t1"; gene_id "Ledus.S5G011200"
Ledus.S5	AUGUSTUS	exon	1241653	1243374	.	-	.	transcript_id "Ledus.S5G011200.t1"; gene_id "Ledus.S5G011200"
Ledus.S5	AUGUSTUS	start_codon	1243372	1243374	.	-	0	transcript_id "Ledus.S5G011200.t1"; gene_id "Ledus.S5G011200"
Ledus.S5	AUGUSTUS	transcript	1241653	1243980	.	-	.	transcript_id "Ledus.S5G011200.t2"; gene_id "Ledus.S5G011200"
Ledus.S5	AUGUSTUS	stop_codon	1241650	1241652	.	-	0	transcript_id "Ledus.S5G011200.t2"; gene_id "Ledus.S5G011200"
Ledus.S5	AUGUSTUS	CDS	1241653	1243980	1	-	0	transcript_id "Ledus.S5G011200.t2"; gene_id "Ledus.S5G011200"
Ledus.S5	AUGUSTUS	exon	1241653	1243980	.	-	.	transcript_id "Ledus.S5G011200.t2"; gene_id "Ledus.S5G011200"
Ledus.S5	AUGUSTUS	start_codon	1243978	1243980	.	-	0	transcript_id "Ledus.S5G011200.t2"; gene_id "Ledus.S5G011200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg930.t1 is derived from g7791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6211484	6213301	.	+	.	Ledus.S2G081200
Ledus.S2	AUGUSTUS	transcript	6211484	6213301	.	+	.	transcript_id "Ledus.S2G081200.t1"; gene_id "Ledus.S2G081200"
Ledus.S2	AUGUSTUS	start_codon	6211484	6211486	.	+	0	transcript_id "Ledus.S2G081200.t1"; gene_id "Ledus.S2G081200"
Ledus.S2	AUGUSTUS	CDS	6211484	6211727	0.9	+	0	transcript_id "Ledus.S2G081200.t1"; gene_id "Ledus.S2G081200"
Ledus.S2	AUGUSTUS	exon	6211484	6211727	.	+	.	transcript_id "Ledus.S2G081200.t1"; gene_id "Ledus.S2G081200"
Ledus.S2	AUGUSTUS	intron	6211728	6212153	.	+	.	transcript_id "Ledus.S2G081200.t1"; gene_id "Ledus.S2G081200"
Ledus.S2	AUGUSTUS	CDS	6212154	6213301	1	+	2	transcript_id "Ledus.S2G081200.t1"; gene_id "Ledus.S2G081200"
Ledus.S2	AUGUSTUS	exon	6212154	6213301	.	+	.	transcript_id "Ledus.S2G081200.t1"; gene_id "Ledus.S2G081200"
Ledus.S2	AUGUSTUS	stop_codon	6213302	6213304	.	+	0	transcript_id "Ledus.S2G081200.t1"; gene_id "Ledus.S2G081200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5860.t1 is derived from g3302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27389801	27390517	.	+	.	Ledus.S1G328100
Ledus.S1	AUGUSTUS	transcript	27389801	27390517	.	+	.	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	start_codon	27389801	27389803	.	+	0	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	CDS	27389801	27389875	0.79	+	0	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	exon	27389801	27389875	.	+	.	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	intron	27389876	27389973	.	+	.	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	CDS	27389974	27390022	1	+	0	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	exon	27389974	27390022	.	+	.	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	intron	27390023	27390184	.	+	.	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	CDS	27390185	27390270	1	+	2	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	exon	27390185	27390270	.	+	.	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	intron	27390271	27390454	.	+	.	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	CDS	27390455	27390517	1	+	0	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	exon	27390455	27390517	.	+	.	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
Ledus.S1	AUGUSTUS	stop_codon	27390518	27390520	.	+	0	transcript_id "Ledus.S1G328100.t1"; gene_id "Ledus.S1G328100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4857.t1 is derived from g2295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20232069	20234176	.	+	.	Ledus.S1G227800
Ledus.S1	AUGUSTUS	transcript	20232069	20234176	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	start_codon	20232069	20232071	.	+	0	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	CDS	20232069	20232207	0.83	+	0	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	exon	20232069	20232207	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	intron	20232208	20232363	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	CDS	20232364	20232750	0.99	+	2	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	exon	20232364	20232750	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	intron	20232751	20232886	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	CDS	20232887	20232965	1	+	2	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	exon	20232887	20232965	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	intron	20232966	20233049	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	CDS	20233050	20233144	1	+	1	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	exon	20233050	20233144	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	intron	20233145	20233231	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	CDS	20233232	20233281	1	+	2	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	exon	20233232	20233281	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	intron	20233282	20233367	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	CDS	20233368	20233492	1	+	0	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	exon	20233368	20233492	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	intron	20233493	20233567	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	CDS	20233568	20233634	1	+	1	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	exon	20233568	20233634	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	intron	20233635	20233724	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	CDS	20233725	20233814	1	+	0	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	exon	20233725	20233814	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	intron	20233815	20233889	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	CDS	20233890	20234001	1	+	0	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	exon	20233890	20234001	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	intron	20234002	20234099	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	CDS	20234100	20234176	1	+	2	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	exon	20234100	20234176	.	+	.	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
Ledus.S1	AUGUSTUS	stop_codon	20234177	20234179	.	+	0	transcript_id "Ledus.S1G227800.t1"; gene_id "Ledus.S1G227800"
# This transcript jg10655.t2 is derived from g11685.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10656.t1 is derived from g11686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16883575	16885429	.	+	.	Ledus.S3G213300
Ledus.S3	AUGUSTUS	transcript	16883575	16885429	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	start_codon	16883575	16883577	.	+	0	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	CDS	16883575	16883841	1	+	0	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	exon	16883575	16883841	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	intron	16883842	16883935	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	CDS	16883936	16884163	1	+	0	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	exon	16883936	16884163	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	intron	16884164	16884253	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	CDS	16884254	16884352	1	+	0	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	exon	16884254	16884352	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	intron	16884353	16884436	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	CDS	16884437	16884559	1	+	0	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	exon	16884437	16884559	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	intron	16884560	16884646	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	CDS	16884647	16884730	1	+	0	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	exon	16884647	16884730	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	intron	16884731	16884812	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	CDS	16884813	16884924	1	+	0	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	exon	16884813	16884924	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	intron	16884925	16885006	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	CDS	16885007	16885092	1	+	2	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	exon	16885007	16885092	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	intron	16885093	16885167	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	CDS	16885168	16885251	1	+	0	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	exon	16885168	16885251	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	intron	16885252	16885342	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	CDS	16885343	16885429	1	+	0	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	exon	16885343	16885429	.	+	.	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
Ledus.S3	AUGUSTUS	stop_codon	16885430	16885432	.	+	0	transcript_id "Ledus.S3G213300.t1"; gene_id "Ledus.S3G213300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9717.t1 is derived from g10747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9354720	9354923	.	-	.	Ledus.S3G119400
Ledus.S3	AUGUSTUS	transcript	9354720	9354923	.	-	.	transcript_id "Ledus.S3G119400.t1"; gene_id "Ledus.S3G119400"
Ledus.S3	AUGUSTUS	stop_codon	9354717	9354719	.	-	0	transcript_id "Ledus.S3G119400.t1"; gene_id "Ledus.S3G119400"
Ledus.S3	AUGUSTUS	CDS	9354720	9354923	0.67	-	0	transcript_id "Ledus.S3G119400.t1"; gene_id "Ledus.S3G119400"
Ledus.S3	AUGUSTUS	exon	9354720	9354923	.	-	.	transcript_id "Ledus.S3G119400.t1"; gene_id "Ledus.S3G119400"
Ledus.S3	AUGUSTUS	start_codon	9354921	9354923	.	-	0	transcript_id "Ledus.S3G119400.t1"; gene_id "Ledus.S3G119400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4991.t1 is derived from g2429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21018526	21018998	.	-	.	Ledus.S1G241200
Ledus.S1	AUGUSTUS	transcript	21018526	21018998	.	-	.	transcript_id "Ledus.S1G241200.t1"; gene_id "Ledus.S1G241200"
Ledus.S1	AUGUSTUS	stop_codon	21018523	21018525	.	-	0	transcript_id "Ledus.S1G241200.t1"; gene_id "Ledus.S1G241200"
Ledus.S1	AUGUSTUS	CDS	21018526	21018575	0.26	-	2	transcript_id "Ledus.S1G241200.t1"; gene_id "Ledus.S1G241200"
Ledus.S1	AUGUSTUS	exon	21018526	21018575	.	-	.	transcript_id "Ledus.S1G241200.t1"; gene_id "Ledus.S1G241200"
Ledus.S1	AUGUSTUS	intron	21018576	21018673	.	-	.	transcript_id "Ledus.S1G241200.t1"; gene_id "Ledus.S1G241200"
Ledus.S1	AUGUSTUS	CDS	21018674	21018998	0.45	-	0	transcript_id "Ledus.S1G241200.t1"; gene_id "Ledus.S1G241200"
Ledus.S1	AUGUSTUS	exon	21018674	21018998	.	-	.	transcript_id "Ledus.S1G241200.t1"; gene_id "Ledus.S1G241200"
Ledus.S1	AUGUSTUS	start_codon	21018996	21018998	.	-	0	transcript_id "Ledus.S1G241200.t1"; gene_id "Ledus.S1G241200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg68.t1 is derived from g9481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	216946	217422	.	-	.	Ledus.C8G002800
Ledus.C8	AUGUSTUS	transcript	216946	217422	.	-	.	transcript_id "Ledus.C8G002800.t1"; gene_id "Ledus.C8G002800"
Ledus.C8	AUGUSTUS	stop_codon	216943	216945	.	-	0	transcript_id "Ledus.C8G002800.t1"; gene_id "Ledus.C8G002800"
Ledus.C8	AUGUSTUS	CDS	216946	217422	0.86	-	0	transcript_id "Ledus.C8G002800.t1"; gene_id "Ledus.C8G002800"
Ledus.C8	AUGUSTUS	exon	216946	217422	.	-	.	transcript_id "Ledus.C8G002800.t1"; gene_id "Ledus.C8G002800"
Ledus.C8	AUGUSTUS	start_codon	217420	217422	.	-	0	transcript_id "Ledus.C8G002800.t1"; gene_id "Ledus.C8G002800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11469.t1 is derived from g5087.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4512412	4514198	.	-	.	Ledus.S4G062500
Ledus.S4	AUGUSTUS	transcript	4512412	4514198	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	stop_codon	4512409	4512411	.	-	0	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	CDS	4512412	4512524	0.52	-	2	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	exon	4512412	4512524	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	intron	4512525	4512926	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	CDS	4512927	4513072	0.6	-	1	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	exon	4512927	4513072	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	intron	4513073	4513319	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	CDS	4513320	4513419	1	-	2	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	exon	4513320	4513419	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	intron	4513420	4513516	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	CDS	4513517	4513546	0.6	-	2	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	exon	4513517	4513546	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	intron	4513547	4513828	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	CDS	4513829	4513903	0.99	-	2	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	exon	4513829	4513903	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	intron	4513904	4514029	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	CDS	4514030	4514036	0.98	-	0	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	exon	4514030	4514036	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	intron	4514037	4514096	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	CDS	4514097	4514198	0.71	-	0	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	exon	4514097	4514198	.	-	.	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
Ledus.S4	AUGUSTUS	start_codon	4514196	4514198	.	-	0	transcript_id "Ledus.S4G062500.t1"; gene_id "Ledus.S4G062500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11376.t1 is derived from g4994.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3880658	3882052	.	+	.	Ledus.S4G053200
Ledus.S4	AUGUSTUS	transcript	3880658	3882052	.	+	.	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	start_codon	3880658	3880660	.	+	0	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	CDS	3880658	3880684	0.62	+	0	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	exon	3880658	3880684	.	+	.	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	intron	3880685	3880799	.	+	.	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	CDS	3880800	3880861	0.69	+	0	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	exon	3880800	3880861	.	+	.	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	intron	3880862	3881133	.	+	.	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	CDS	3881134	3881179	0.53	+	1	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	exon	3881134	3881179	.	+	.	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	intron	3881180	3881788	.	+	.	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	CDS	3881789	3881831	0.47	+	0	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	exon	3881789	3881831	.	+	.	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	intron	3881832	3881993	.	+	.	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	CDS	3881994	3882052	0.77	+	2	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	exon	3881994	3882052	.	+	.	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
Ledus.S4	AUGUSTUS	stop_codon	3882053	3882055	.	+	0	transcript_id "Ledus.S4G053200.t1"; gene_id "Ledus.S4G053200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8392.t1 is derived from g13064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11452244	11457662	.	-	.	Ledus.S5G117000
Ledus.S5	AUGUSTUS	transcript	11452244	11457662	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	stop_codon	11452241	11452243	.	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11452244	11452256	1	-	1	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11452244	11452256	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	intron	11452257	11452338	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11452339	11452379	0.91	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11452339	11452379	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	intron	11452380	11452515	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11452516	11452548	0.9	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11452516	11452548	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	intron	11452549	11452687	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11452688	11452807	1	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11452688	11452807	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	intron	11452808	11452912	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11452913	11453032	1	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11452913	11453032	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	intron	11453033	11453182	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11453183	11453743	1	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11453183	11453743	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	intron	11453744	11453966	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11453967	11454026	1	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11453967	11454026	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	intron	11454027	11454180	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11454181	11454246	1	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11454181	11454246	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	intron	11454247	11454347	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11454348	11454458	1	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11454348	11454458	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	intron	11454459	11454571	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11454572	11454662	0.93	-	1	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11454572	11454662	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	intron	11454663	11454755	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11454756	11454856	1	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11454756	11454856	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	intron	11454857	11455093	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11455094	11455201	1	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11455094	11455201	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	intron	11455202	11455292	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	CDS	11455293	11457662	0.99	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	exon	11455293	11457662	.	-	.	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
Ledus.S5	AUGUSTUS	start_codon	11457660	11457662	.	-	0	transcript_id "Ledus.S5G117000.t1"; gene_id "Ledus.S5G117000"
# This transcript jg9917.t2 is derived from g10947.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9918.t1 is derived from g10948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11206967	11208533	.	-	.	Ledus.S3G139500
Ledus.S3	AUGUSTUS	transcript	11206967	11208533	.	-	.	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	stop_codon	11206964	11206966	.	-	0	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	CDS	11206967	11207032	1	-	0	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	exon	11206967	11207032	.	-	.	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	intron	11207033	11207112	.	-	.	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	CDS	11207113	11207175	0.99	-	0	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	exon	11207113	11207175	.	-	.	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	intron	11207176	11207284	.	-	.	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	CDS	11207285	11207395	1	-	0	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	exon	11207285	11207395	.	-	.	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	intron	11207396	11207572	.	-	.	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	CDS	11207573	11207765	1	-	1	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	exon	11207573	11207765	.	-	.	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	intron	11207766	11207890	.	-	.	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	CDS	11207891	11208029	1	-	2	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	exon	11207891	11208029	.	-	.	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	intron	11208030	11208178	.	-	.	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	CDS	11208179	11208533	0.98	-	0	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	exon	11208179	11208533	.	-	.	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
Ledus.S3	AUGUSTUS	start_codon	11208531	11208533	.	-	0	transcript_id "Ledus.S3G139500.t1"; gene_id "Ledus.S3G139500"
# This transcript jg3477.t1 is derived from g912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8648116	8648442	.	+	.	Ledus.S1G089800
Ledus.S1	AUGUSTUS	transcript	8648116	8648442	.	+	.	transcript_id "Ledus.S1G089800.t1"; gene_id "Ledus.S1G089800"
Ledus.S1	AUGUSTUS	start_codon	8648116	8648118	.	+	0	transcript_id "Ledus.S1G089800.t1"; gene_id "Ledus.S1G089800"
Ledus.S1	AUGUSTUS	CDS	8648116	8648442	0.86	+	0	transcript_id "Ledus.S1G089800.t1"; gene_id "Ledus.S1G089800"
Ledus.S1	AUGUSTUS	exon	8648116	8648442	.	+	.	transcript_id "Ledus.S1G089800.t1"; gene_id "Ledus.S1G089800"
Ledus.S1	AUGUSTUS	stop_codon	8648443	8648445	.	+	0	transcript_id "Ledus.S1G089800.t1"; gene_id "Ledus.S1G089800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11437.t1 is derived from g5055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4292340	4293537	.	+	.	Ledus.S4G059300
Ledus.S4	AUGUSTUS	transcript	4292340	4293537	.	+	.	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	start_codon	4292340	4292342	.	+	0	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	CDS	4292340	4292846	0.65	+	0	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	exon	4292340	4292846	.	+	.	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	intron	4292847	4292957	.	+	.	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	CDS	4292958	4293013	1	+	0	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	exon	4292958	4293013	.	+	.	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	intron	4293014	4293110	.	+	.	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	CDS	4293111	4293143	0.79	+	1	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	exon	4293111	4293143	.	+	.	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	intron	4293144	4293227	.	+	.	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	CDS	4293228	4293291	1	+	1	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	exon	4293228	4293291	.	+	.	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	intron	4293292	4293528	.	+	.	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	CDS	4293529	4293537	1	+	0	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	exon	4293529	4293537	.	+	.	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
Ledus.S4	AUGUSTUS	stop_codon	4293538	4293540	.	+	0	transcript_id "Ledus.S4G059300.t1"; gene_id "Ledus.S4G059300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12169.t1 is derived from g5788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10074891	10076052	.	+	.	Ledus.S4G132500
Ledus.S4	AUGUSTUS	transcript	10074891	10076052	.	+	.	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	start_codon	10074891	10074893	.	+	0	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	CDS	10074891	10075080	0.48	+	0	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	exon	10074891	10075080	.	+	.	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	intron	10075081	10075163	.	+	.	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	CDS	10075164	10075273	0.52	+	2	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	exon	10075164	10075273	.	+	.	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	intron	10075274	10075688	.	+	.	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	CDS	10075689	10075761	0.95	+	0	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	exon	10075689	10075761	.	+	.	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	intron	10075762	10075852	.	+	.	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	CDS	10075853	10076052	0.88	+	2	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	exon	10075853	10076052	.	+	.	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
Ledus.S4	AUGUSTUS	stop_codon	10076053	10076055	.	+	0	transcript_id "Ledus.S4G132500.t1"; gene_id "Ledus.S4G132500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10592.t1 is derived from g11622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16280308	16280937	.	+	.	Ledus.S3G206900
Ledus.S3	AUGUSTUS	transcript	16280308	16280937	.	+	.	transcript_id "Ledus.S3G206900.t1"; gene_id "Ledus.S3G206900"
Ledus.S3	AUGUSTUS	start_codon	16280308	16280310	.	+	0	transcript_id "Ledus.S3G206900.t1"; gene_id "Ledus.S3G206900"
Ledus.S3	AUGUSTUS	CDS	16280308	16280364	0.57	+	0	transcript_id "Ledus.S3G206900.t1"; gene_id "Ledus.S3G206900"
Ledus.S3	AUGUSTUS	exon	16280308	16280364	.	+	.	transcript_id "Ledus.S3G206900.t1"; gene_id "Ledus.S3G206900"
Ledus.S3	AUGUSTUS	intron	16280365	16280454	.	+	.	transcript_id "Ledus.S3G206900.t1"; gene_id "Ledus.S3G206900"
Ledus.S3	AUGUSTUS	CDS	16280455	16280937	0.68	+	0	transcript_id "Ledus.S3G206900.t1"; gene_id "Ledus.S3G206900"
Ledus.S3	AUGUSTUS	exon	16280455	16280937	.	+	.	transcript_id "Ledus.S3G206900.t1"; gene_id "Ledus.S3G206900"
Ledus.S3	AUGUSTUS	stop_codon	16280938	16280940	.	+	0	transcript_id "Ledus.S3G206900.t1"; gene_id "Ledus.S3G206900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7869.t1 is derived from g12540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7549282	7551755	.	-	.	Ledus.S5G064700
Ledus.S5	AUGUSTUS	transcript	7549282	7551755	.	-	.	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	stop_codon	7549279	7549281	.	-	0	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	CDS	7549282	7549935	0.35	-	0	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	exon	7549282	7549935	.	-	.	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	intron	7549936	7550029	.	-	.	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	CDS	7550030	7550143	1	-	0	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	exon	7550030	7550143	.	-	.	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	intron	7550144	7550233	.	-	.	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	CDS	7550234	7550524	1	-	0	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	exon	7550234	7550524	.	-	.	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	intron	7550525	7550634	.	-	.	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	CDS	7550635	7550943	1	-	0	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	exon	7550635	7550943	.	-	.	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	intron	7550944	7551050	.	-	.	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	CDS	7551051	7551755	0.57	-	0	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	exon	7551051	7551755	.	-	.	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
Ledus.S5	AUGUSTUS	start_codon	7551753	7551755	.	-	0	transcript_id "Ledus.S5G064700.t1"; gene_id "Ledus.S5G064700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2818.t1 is derived from g252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3922062	3926130	.	-	.	Ledus.S1G023900
Ledus.S1	AUGUSTUS	transcript	3922062	3926130	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	stop_codon	3922059	3922061	.	-	0	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	CDS	3922062	3922145	1	-	0	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	exon	3922062	3922145	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	intron	3922146	3922301	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	CDS	3922302	3922425	1	-	1	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	exon	3922302	3922425	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	intron	3922426	3922514	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	CDS	3922515	3922735	1	-	0	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	exon	3922515	3922735	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	intron	3922736	3922830	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	CDS	3922831	3923219	1	-	2	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	exon	3922831	3923219	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	intron	3923220	3923378	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	CDS	3923379	3923982	1	-	0	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	exon	3923379	3923982	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	intron	3923983	3924175	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	CDS	3924176	3924235	1	-	0	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	exon	3924176	3924235	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	intron	3924236	3924398	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	CDS	3924399	3924465	1	-	1	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	exon	3924399	3924465	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	intron	3924466	3924621	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	CDS	3924622	3924718	1	-	2	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	exon	3924622	3924718	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	intron	3924719	3924878	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	CDS	3924879	3924992	0.99	-	2	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	exon	3924879	3924992	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	intron	3924993	3925105	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	CDS	3925106	3925163	0.99	-	0	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	exon	3925106	3925163	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	intron	3925164	3925247	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	CDS	3925248	3925401	1	-	1	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	exon	3925248	3925401	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	intron	3925402	3925774	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	CDS	3925775	3926130	0.46	-	0	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	exon	3925775	3926130	.	-	.	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
Ledus.S1	AUGUSTUS	start_codon	3926128	3926130	.	-	0	transcript_id "Ledus.S1G023900.t1"; gene_id "Ledus.S1G023900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11914.t1 is derived from g5533.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7728870	7730928	.	-	.	Ledus.S4G107000
Ledus.S4	AUGUSTUS	transcript	7728870	7730928	.	-	.	transcript_id "Ledus.S4G107000.t1"; gene_id "Ledus.S4G107000"
Ledus.S4	AUGUSTUS	stop_codon	7728867	7728869	.	-	0	transcript_id "Ledus.S4G107000.t1"; gene_id "Ledus.S4G107000"
Ledus.S4	AUGUSTUS	CDS	7728870	7729163	0.9	-	0	transcript_id "Ledus.S4G107000.t1"; gene_id "Ledus.S4G107000"
Ledus.S4	AUGUSTUS	exon	7728870	7729163	.	-	.	transcript_id "Ledus.S4G107000.t1"; gene_id "Ledus.S4G107000"
Ledus.S4	AUGUSTUS	intron	7729164	7729560	.	-	.	transcript_id "Ledus.S4G107000.t1"; gene_id "Ledus.S4G107000"
Ledus.S4	AUGUSTUS	CDS	7729561	7730928	0.26	-	0	transcript_id "Ledus.S4G107000.t1"; gene_id "Ledus.S4G107000"
Ledus.S4	AUGUSTUS	exon	7729561	7730928	.	-	.	transcript_id "Ledus.S4G107000.t1"; gene_id "Ledus.S4G107000"
Ledus.S4	AUGUSTUS	start_codon	7730926	7730928	.	-	0	transcript_id "Ledus.S4G107000.t1"; gene_id "Ledus.S4G107000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12226.t1 is derived from g5845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10496367	10498583	.	-	.	Ledus.S4G138200
Ledus.S4	AUGUSTUS	transcript	10496367	10498583	.	-	.	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	stop_codon	10496364	10496366	.	-	0	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	CDS	10496367	10496458	1	-	2	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	exon	10496367	10496458	.	-	.	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	intron	10496459	10496746	.	-	.	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	CDS	10496747	10496807	0.98	-	0	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	exon	10496747	10496807	.	-	.	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	intron	10496808	10496892	.	-	.	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	CDS	10496893	10497274	1	-	1	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	exon	10496893	10497274	.	-	.	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	intron	10497275	10497575	.	-	.	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	CDS	10497576	10497732	1	-	2	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	exon	10497576	10497732	.	-	.	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	intron	10497733	10498180	.	-	.	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	CDS	10498181	10498583	0.98	-	0	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	exon	10498181	10498583	.	-	.	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
Ledus.S4	AUGUSTUS	start_codon	10498581	10498583	.	-	0	transcript_id "Ledus.S4G138200.t1"; gene_id "Ledus.S4G138200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg267.t1 is derived from g7128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1301517	1301954	.	-	.	Ledus.S2G014900
Ledus.S2	AUGUSTUS	transcript	1301517	1301954	.	-	.	transcript_id "Ledus.S2G014900.t1"; gene_id "Ledus.S2G014900"
Ledus.S2	AUGUSTUS	stop_codon	1301514	1301516	.	-	0	transcript_id "Ledus.S2G014900.t1"; gene_id "Ledus.S2G014900"
Ledus.S2	AUGUSTUS	CDS	1301517	1301954	0.97	-	0	transcript_id "Ledus.S2G014900.t1"; gene_id "Ledus.S2G014900"
Ledus.S2	AUGUSTUS	exon	1301517	1301954	.	-	.	transcript_id "Ledus.S2G014900.t1"; gene_id "Ledus.S2G014900"
Ledus.S2	AUGUSTUS	start_codon	1301952	1301954	.	-	0	transcript_id "Ledus.S2G014900.t1"; gene_id "Ledus.S2G014900"
# This transcript jg395.t2 is derived from g7256.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg395.t3 is derived from g7256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg396.t1 is derived from g7257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2222437	2223406	.	-	.	Ledus.S2G027800
Ledus.S2	AUGUSTUS	transcript	2222437	2223406	.	-	.	transcript_id "Ledus.S2G027800.t1"; gene_id "Ledus.S2G027800"
Ledus.S2	AUGUSTUS	stop_codon	2222434	2222436	.	-	0	transcript_id "Ledus.S2G027800.t1"; gene_id "Ledus.S2G027800"
Ledus.S2	AUGUSTUS	CDS	2222437	2222550	1	-	0	transcript_id "Ledus.S2G027800.t1"; gene_id "Ledus.S2G027800"
Ledus.S2	AUGUSTUS	exon	2222437	2222550	.	-	.	transcript_id "Ledus.S2G027800.t1"; gene_id "Ledus.S2G027800"
Ledus.S2	AUGUSTUS	intron	2222551	2222627	.	-	.	transcript_id "Ledus.S2G027800.t1"; gene_id "Ledus.S2G027800"
Ledus.S2	AUGUSTUS	CDS	2222628	2223234	0.92	-	1	transcript_id "Ledus.S2G027800.t1"; gene_id "Ledus.S2G027800"
Ledus.S2	AUGUSTUS	exon	2222628	2223234	.	-	.	transcript_id "Ledus.S2G027800.t1"; gene_id "Ledus.S2G027800"
Ledus.S2	AUGUSTUS	intron	2223235	2223311	.	-	.	transcript_id "Ledus.S2G027800.t1"; gene_id "Ledus.S2G027800"
Ledus.S2	AUGUSTUS	CDS	2223312	2223406	0.98	-	0	transcript_id "Ledus.S2G027800.t1"; gene_id "Ledus.S2G027800"
Ledus.S2	AUGUSTUS	exon	2223312	2223406	.	-	.	transcript_id "Ledus.S2G027800.t1"; gene_id "Ledus.S2G027800"
Ledus.S2	AUGUSTUS	start_codon	2223404	2223406	.	-	0	transcript_id "Ledus.S2G027800.t1"; gene_id "Ledus.S2G027800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg747.t1 is derived from g7608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4804112	4807451	.	-	.	Ledus.S2G062900
Ledus.S2	AUGUSTUS	transcript	4804112	4807451	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	stop_codon	4804109	4804111	.	-	0	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	CDS	4804112	4804176	0.66	-	2	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	exon	4804112	4804176	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	intron	4804177	4804313	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	CDS	4804314	4804350	1	-	0	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	exon	4804314	4804350	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	intron	4804351	4804443	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	CDS	4804444	4804665	1	-	0	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	exon	4804444	4804665	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	intron	4804666	4804783	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	CDS	4804784	4804861	0.98	-	0	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	exon	4804784	4804861	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	intron	4804862	4805036	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	CDS	4805037	4805936	0.97	-	0	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	exon	4805037	4805936	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	intron	4805937	4806062	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	CDS	4806063	4806250	1	-	2	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	exon	4806063	4806250	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	intron	4806251	4806347	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	CDS	4806348	4806466	0.65	-	1	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	exon	4806348	4806466	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	intron	4806467	4806597	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	CDS	4806598	4806827	0.45	-	0	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	exon	4806598	4806827	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	intron	4806828	4806921	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	CDS	4806922	4807080	0.97	-	0	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	exon	4806922	4807080	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	intron	4807081	4807175	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	CDS	4807176	4807451	0.82	-	0	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	exon	4807176	4807451	.	-	.	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
Ledus.S2	AUGUSTUS	start_codon	4807449	4807451	.	-	0	transcript_id "Ledus.S2G062900.t1"; gene_id "Ledus.S2G062900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7774.t1 is derived from g12445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6429220	6430429	.	-	.	Ledus.S5G055200
Ledus.S5	AUGUSTUS	transcript	6429220	6430429	.	-	.	transcript_id "Ledus.S5G055200.t1"; gene_id "Ledus.S5G055200"
Ledus.S5	AUGUSTUS	stop_codon	6429217	6429219	.	-	0	transcript_id "Ledus.S5G055200.t1"; gene_id "Ledus.S5G055200"
Ledus.S5	AUGUSTUS	CDS	6429220	6429573	0.99	-	0	transcript_id "Ledus.S5G055200.t1"; gene_id "Ledus.S5G055200"
Ledus.S5	AUGUSTUS	exon	6429220	6429573	.	-	.	transcript_id "Ledus.S5G055200.t1"; gene_id "Ledus.S5G055200"
Ledus.S5	AUGUSTUS	intron	6429574	6429658	.	-	.	transcript_id "Ledus.S5G055200.t1"; gene_id "Ledus.S5G055200"
Ledus.S5	AUGUSTUS	CDS	6429659	6430429	0.89	-	0	transcript_id "Ledus.S5G055200.t1"; gene_id "Ledus.S5G055200"
Ledus.S5	AUGUSTUS	exon	6429659	6430429	.	-	.	transcript_id "Ledus.S5G055200.t1"; gene_id "Ledus.S5G055200"
Ledus.S5	AUGUSTUS	start_codon	6430427	6430429	.	-	0	transcript_id "Ledus.S5G055200.t1"; gene_id "Ledus.S5G055200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2763.t1 is derived from g197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3377164	3379197	.	-	.	Ledus.S1G018400
Ledus.S1	AUGUSTUS	transcript	3377164	3379197	.	-	.	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	stop_codon	3377161	3377163	.	-	0	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	CDS	3377164	3377418	1	-	0	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	exon	3377164	3377418	.	-	.	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	intron	3377419	3377508	.	-	.	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	CDS	3377509	3377857	0.99	-	1	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	exon	3377509	3377857	.	-	.	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	intron	3377858	3378004	.	-	.	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	CDS	3378005	3378850	0.63	-	1	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	exon	3378005	3378850	.	-	.	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	intron	3378851	3378957	.	-	.	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	CDS	3378958	3379048	0.44	-	2	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	exon	3378958	3379048	.	-	.	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	intron	3379049	3379178	.	-	.	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	CDS	3379179	3379197	0.65	-	0	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	exon	3379179	3379197	.	-	.	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
Ledus.S1	AUGUSTUS	start_codon	3379195	3379197	.	-	0	transcript_id "Ledus.S1G018400.t1"; gene_id "Ledus.S1G018400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7403.t1 is derived from g12074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2108739	2114641	.	-	.	Ledus.S5G018100
Ledus.S5	AUGUSTUS	transcript	2108739	2114641	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	stop_codon	2108736	2108738	.	-	0	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2108739	2108840	1	-	0	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2108739	2108840	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	intron	2108841	2108934	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2108935	2109144	1	-	0	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2108935	2109144	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	intron	2109145	2109289	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2109290	2109895	1	-	0	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2109290	2109895	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	intron	2109896	2110010	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2110011	2110232	0.92	-	0	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2110011	2110232	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	intron	2110233	2110339	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2110340	2110470	1	-	2	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2110340	2110470	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	intron	2110471	2110725	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2110726	2111650	0.91	-	0	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2110726	2111650	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	intron	2111651	2111762	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2111763	2111843	1	-	0	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2111763	2111843	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	intron	2111844	2112013	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2112014	2112091	1	-	0	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2112014	2112091	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	intron	2112092	2112179	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2112180	2113162	0.96	-	2	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2112180	2113162	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	intron	2113163	2113251	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2113252	2113357	1	-	0	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2113252	2113357	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	intron	2113358	2113604	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2113605	2114005	0.87	-	2	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2113605	2114005	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	intron	2114006	2114270	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2114271	2114336	0.95	-	2	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2114271	2114336	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	intron	2114337	2114511	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	CDS	2114512	2114641	0.65	-	0	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	exon	2114512	2114641	.	-	.	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
Ledus.S5	AUGUSTUS	start_codon	2114639	2114641	.	-	0	transcript_id "Ledus.S5G018100.t1"; gene_id "Ledus.S5G018100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10105.t1 is derived from g11135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12728987	12729948	.	-	.	Ledus.S3G158200
Ledus.S3	AUGUSTUS	transcript	12728987	12729948	.	-	.	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	stop_codon	12728984	12728986	.	-	0	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	CDS	12728987	12729160	1	-	0	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	exon	12728987	12729160	.	-	.	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	intron	12729161	12729255	.	-	.	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	CDS	12729256	12729392	1	-	2	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	exon	12729256	12729392	.	-	.	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	intron	12729393	12729476	.	-	.	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	CDS	12729477	12729613	1	-	1	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	exon	12729477	12729613	.	-	.	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	intron	12729614	12729724	.	-	.	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	CDS	12729725	12729948	0.92	-	0	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	exon	12729725	12729948	.	-	.	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
Ledus.S3	AUGUSTUS	start_codon	12729946	12729948	.	-	0	transcript_id "Ledus.S3G158200.t1"; gene_id "Ledus.S3G158200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7706.t1 is derived from g12377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5318740	5321506	.	+	.	Ledus.S5G048400
Ledus.S5	AUGUSTUS	transcript	5318740	5321506	.	+	.	transcript_id "Ledus.S5G048400.t1"; gene_id "Ledus.S5G048400"
Ledus.S5	AUGUSTUS	start_codon	5318740	5318742	.	+	0	transcript_id "Ledus.S5G048400.t1"; gene_id "Ledus.S5G048400"
Ledus.S5	AUGUSTUS	CDS	5318740	5319890	0.88	+	0	transcript_id "Ledus.S5G048400.t1"; gene_id "Ledus.S5G048400"
Ledus.S5	AUGUSTUS	exon	5318740	5319890	.	+	.	transcript_id "Ledus.S5G048400.t1"; gene_id "Ledus.S5G048400"
Ledus.S5	AUGUSTUS	intron	5319891	5320026	.	+	.	transcript_id "Ledus.S5G048400.t1"; gene_id "Ledus.S5G048400"
Ledus.S5	AUGUSTUS	CDS	5320027	5321506	0.36	+	1	transcript_id "Ledus.S5G048400.t1"; gene_id "Ledus.S5G048400"
Ledus.S5	AUGUSTUS	exon	5320027	5321506	.	+	.	transcript_id "Ledus.S5G048400.t1"; gene_id "Ledus.S5G048400"
Ledus.S5	AUGUSTUS	stop_codon	5321507	5321509	.	+	0	transcript_id "Ledus.S5G048400.t1"; gene_id "Ledus.S5G048400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5276.t1 is derived from g2715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22833859	22834249	.	-	.	Ledus.S1G269700
Ledus.S1	AUGUSTUS	transcript	22833859	22834249	.	-	.	transcript_id "Ledus.S1G269700.t1"; gene_id "Ledus.S1G269700"
Ledus.S1	AUGUSTUS	stop_codon	22833856	22833858	.	-	0	transcript_id "Ledus.S1G269700.t1"; gene_id "Ledus.S1G269700"
Ledus.S1	AUGUSTUS	CDS	22833859	22833951	1	-	0	transcript_id "Ledus.S1G269700.t1"; gene_id "Ledus.S1G269700"
Ledus.S1	AUGUSTUS	exon	22833859	22833951	.	-	.	transcript_id "Ledus.S1G269700.t1"; gene_id "Ledus.S1G269700"
Ledus.S1	AUGUSTUS	intron	22833952	22834032	.	-	.	transcript_id "Ledus.S1G269700.t1"; gene_id "Ledus.S1G269700"
Ledus.S1	AUGUSTUS	CDS	22834033	22834155	1	-	0	transcript_id "Ledus.S1G269700.t1"; gene_id "Ledus.S1G269700"
Ledus.S1	AUGUSTUS	exon	22834033	22834155	.	-	.	transcript_id "Ledus.S1G269700.t1"; gene_id "Ledus.S1G269700"
Ledus.S1	AUGUSTUS	intron	22834156	22834222	.	-	.	transcript_id "Ledus.S1G269700.t1"; gene_id "Ledus.S1G269700"
Ledus.S1	AUGUSTUS	CDS	22834223	22834249	0.9	-	0	transcript_id "Ledus.S1G269700.t1"; gene_id "Ledus.S1G269700"
Ledus.S1	AUGUSTUS	exon	22834223	22834249	.	-	.	transcript_id "Ledus.S1G269700.t1"; gene_id "Ledus.S1G269700"
Ledus.S1	AUGUSTUS	start_codon	22834247	22834249	.	-	0	transcript_id "Ledus.S1G269700.t1"; gene_id "Ledus.S1G269700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2786.t1 is derived from g220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3706298	3707085	.	-	.	Ledus.S1G020700
Ledus.S1	AUGUSTUS	transcript	3706298	3707085	.	-	.	transcript_id "Ledus.S1G020700.t1"; gene_id "Ledus.S1G020700"
Ledus.S1	AUGUSTUS	stop_codon	3706295	3706297	.	-	0	transcript_id "Ledus.S1G020700.t1"; gene_id "Ledus.S1G020700"
Ledus.S1	AUGUSTUS	CDS	3706298	3706306	0.77	-	0	transcript_id "Ledus.S1G020700.t1"; gene_id "Ledus.S1G020700"
Ledus.S1	AUGUSTUS	exon	3706298	3706306	.	-	.	transcript_id "Ledus.S1G020700.t1"; gene_id "Ledus.S1G020700"
Ledus.S1	AUGUSTUS	intron	3706307	3706404	.	-	.	transcript_id "Ledus.S1G020700.t1"; gene_id "Ledus.S1G020700"
Ledus.S1	AUGUSTUS	CDS	3706405	3707085	0.51	-	0	transcript_id "Ledus.S1G020700.t1"; gene_id "Ledus.S1G020700"
Ledus.S1	AUGUSTUS	exon	3706405	3707085	.	-	.	transcript_id "Ledus.S1G020700.t1"; gene_id "Ledus.S1G020700"
Ledus.S1	AUGUSTUS	start_codon	3707083	3707085	.	-	0	transcript_id "Ledus.S1G020700.t1"; gene_id "Ledus.S1G020700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7308.t1 is derived from g11979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	969513	969863	.	+	.	Ledus.S5G008600
Ledus.S5	AUGUSTUS	transcript	969513	969863	.	+	.	transcript_id "Ledus.S5G008600.t1"; gene_id "Ledus.S5G008600"
Ledus.S5	AUGUSTUS	start_codon	969513	969515	.	+	0	transcript_id "Ledus.S5G008600.t1"; gene_id "Ledus.S5G008600"
Ledus.S5	AUGUSTUS	CDS	969513	969863	0.65	+	0	transcript_id "Ledus.S5G008600.t1"; gene_id "Ledus.S5G008600"
Ledus.S5	AUGUSTUS	exon	969513	969863	.	+	.	transcript_id "Ledus.S5G008600.t1"; gene_id "Ledus.S5G008600"
Ledus.S5	AUGUSTUS	stop_codon	969864	969866	.	+	0	transcript_id "Ledus.S5G008600.t1"; gene_id "Ledus.S5G008600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6601.t1 is derived from g4044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32613553	32616633	.	-	.	Ledus.S1G402200
Ledus.S1	AUGUSTUS	transcript	32613553	32616633	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	stop_codon	32613550	32613552	.	-	0	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	CDS	32613553	32613601	0.99	-	1	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	exon	32613553	32613601	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	intron	32613602	32613697	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	CDS	32613698	32613886	1	-	1	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	exon	32613698	32613886	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	intron	32613887	32614002	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	CDS	32614003	32614082	0.99	-	0	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	exon	32614003	32614082	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	intron	32614083	32614163	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	CDS	32614164	32614248	1	-	1	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	exon	32614164	32614248	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	intron	32614249	32614323	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	CDS	32614324	32614388	0.97	-	0	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	exon	32614324	32614388	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	intron	32614389	32614476	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	CDS	32614477	32615004	0.55	-	0	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	exon	32614477	32615004	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	intron	32615005	32615116	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	CDS	32615117	32615803	0.99	-	0	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	exon	32615117	32615803	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	intron	32615804	32615899	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	CDS	32615900	32615986	1	-	0	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	exon	32615900	32615986	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	intron	32615987	32616093	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	CDS	32616094	32616180	1	-	0	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	exon	32616094	32616180	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	intron	32616181	32616268	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	CDS	32616269	32616331	1	-	0	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	exon	32616269	32616331	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	intron	32616332	32616415	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	CDS	32616416	32616454	1	-	0	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	exon	32616416	32616454	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	intron	32616455	32616588	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	CDS	32616589	32616633	1	-	0	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	exon	32616589	32616633	.	-	.	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
Ledus.S1	AUGUSTUS	start_codon	32616631	32616633	.	-	0	transcript_id "Ledus.S1G402200.t1"; gene_id "Ledus.S1G402200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg274.t1 is derived from g7135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1325503	1327874	.	+	.	Ledus.S2G015600
Ledus.S2	AUGUSTUS	transcript	1325503	1327874	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	start_codon	1325503	1325505	.	+	0	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1325503	1325571	0.9	+	0	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1325503	1325571	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1325572	1325661	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1325662	1325719	1	+	0	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1325662	1325719	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1325720	1325866	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1325867	1326098	1	+	2	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1325867	1326098	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1326099	1326251	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1326252	1326598	0.99	+	1	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1326252	1326598	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1326599	1326842	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1326843	1327117	0.58	+	2	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1326843	1327117	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1327118	1327217	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1327218	1327285	1	+	0	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1327218	1327285	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1327286	1327387	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1327388	1327449	1	+	1	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1327388	1327449	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1327450	1327542	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1327543	1327585	0.52	+	2	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1327543	1327585	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1327586	1327651	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1327652	1327660	0.52	+	1	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1327652	1327660	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1327661	1327744	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1327745	1327874	0.51	+	1	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1327745	1327874	.	+	.	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	stop_codon	1327875	1327877	.	+	0	transcript_id "Ledus.S2G015600.t1"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	transcript	1325503	1327874	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	start_codon	1325503	1325505	.	+	0	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1325503	1325571	0.9	+	0	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1325503	1325571	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1325572	1325661	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1325662	1325719	1	+	0	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1325662	1325719	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1325720	1325866	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1325867	1326098	1	+	2	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1325867	1326098	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1326099	1326251	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1326252	1326598	1	+	1	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1326252	1326598	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1326599	1326827	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1326828	1326904	0.51	+	2	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1326828	1326904	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1326905	1327072	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1327073	1327117	0.5	+	0	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1327073	1327117	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1327118	1327217	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1327218	1327285	1	+	0	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1327218	1327285	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1327286	1327387	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1327388	1327449	1	+	1	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1327388	1327449	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1327450	1327542	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1327543	1327585	0.59	+	2	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1327543	1327585	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1327586	1327651	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1327652	1327660	0.59	+	1	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1327652	1327660	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	intron	1327661	1327744	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	CDS	1327745	1327874	0.59	+	1	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	exon	1327745	1327874	.	+	.	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
Ledus.S2	AUGUSTUS	stop_codon	1327875	1327877	.	+	0	transcript_id "Ledus.S2G015600.t2"; gene_id "Ledus.S2G015600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3428.t1 is derived from g863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8256783	8257875	.	+	.	Ledus.S1G084900
Ledus.S1	AUGUSTUS	transcript	8256783	8257875	.	+	.	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	start_codon	8256783	8256785	.	+	0	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	CDS	8256783	8256795	0.58	+	0	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	exon	8256783	8256795	.	+	.	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	intron	8256796	8257324	.	+	.	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	CDS	8257325	8257366	0.43	+	2	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	exon	8257325	8257366	.	+	.	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	intron	8257367	8257430	.	+	.	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	CDS	8257431	8257535	0.59	+	2	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	exon	8257431	8257535	.	+	.	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	intron	8257536	8257615	.	+	.	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	CDS	8257616	8257875	0.65	+	2	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	exon	8257616	8257875	.	+	.	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
Ledus.S1	AUGUSTUS	stop_codon	8257876	8257878	.	+	0	transcript_id "Ledus.S1G084900.t1"; gene_id "Ledus.S1G084900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1758.t1 is derived from g8620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12361821	12362623	.	+	.	Ledus.S2G164000
Ledus.S2	AUGUSTUS	transcript	12361821	12362623	.	+	.	transcript_id "Ledus.S2G164000.t1"; gene_id "Ledus.S2G164000"
Ledus.S2	AUGUSTUS	start_codon	12361821	12361823	.	+	0	transcript_id "Ledus.S2G164000.t1"; gene_id "Ledus.S2G164000"
Ledus.S2	AUGUSTUS	CDS	12361821	12362217	0.63	+	0	transcript_id "Ledus.S2G164000.t1"; gene_id "Ledus.S2G164000"
Ledus.S2	AUGUSTUS	exon	12361821	12362217	.	+	.	transcript_id "Ledus.S2G164000.t1"; gene_id "Ledus.S2G164000"
Ledus.S2	AUGUSTUS	intron	12362218	12362285	.	+	.	transcript_id "Ledus.S2G164000.t1"; gene_id "Ledus.S2G164000"
Ledus.S2	AUGUSTUS	CDS	12362286	12362623	1	+	2	transcript_id "Ledus.S2G164000.t1"; gene_id "Ledus.S2G164000"
Ledus.S2	AUGUSTUS	exon	12362286	12362623	.	+	.	transcript_id "Ledus.S2G164000.t1"; gene_id "Ledus.S2G164000"
Ledus.S2	AUGUSTUS	stop_codon	12362624	12362626	.	+	0	transcript_id "Ledus.S2G164000.t1"; gene_id "Ledus.S2G164000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8688.t1 is derived from g9718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1377005	1377390	.	+	.	Ledus.S3G016500
Ledus.S3	AUGUSTUS	transcript	1377005	1377390	.	+	.	transcript_id "Ledus.S3G016500.t1"; gene_id "Ledus.S3G016500"
Ledus.S3	AUGUSTUS	start_codon	1377005	1377007	.	+	0	transcript_id "Ledus.S3G016500.t1"; gene_id "Ledus.S3G016500"
Ledus.S3	AUGUSTUS	CDS	1377005	1377186	0.99	+	0	transcript_id "Ledus.S3G016500.t1"; gene_id "Ledus.S3G016500"
Ledus.S3	AUGUSTUS	exon	1377005	1377186	.	+	.	transcript_id "Ledus.S3G016500.t1"; gene_id "Ledus.S3G016500"
Ledus.S3	AUGUSTUS	intron	1377187	1377299	.	+	.	transcript_id "Ledus.S3G016500.t1"; gene_id "Ledus.S3G016500"
Ledus.S3	AUGUSTUS	CDS	1377300	1377390	0.9	+	1	transcript_id "Ledus.S3G016500.t1"; gene_id "Ledus.S3G016500"
Ledus.S3	AUGUSTUS	exon	1377300	1377390	.	+	.	transcript_id "Ledus.S3G016500.t1"; gene_id "Ledus.S3G016500"
Ledus.S3	AUGUSTUS	stop_codon	1377391	1377393	.	+	0	transcript_id "Ledus.S3G016500.t1"; gene_id "Ledus.S3G016500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1062.t1 is derived from g7923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7196268	7200651	.	-	.	Ledus.S2G094400
Ledus.S2	AUGUSTUS	transcript	7196268	7200651	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	stop_codon	7196265	7196267	.	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7196268	7196399	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7196268	7196399	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7196400	7196490	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7196491	7196598	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7196491	7196598	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7196599	7196688	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7196689	7196778	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7196689	7196778	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7196779	7196877	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7196878	7196946	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7196878	7196946	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7196947	7197074	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7197075	7197128	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7197075	7197128	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7197129	7197225	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7197226	7197299	1	-	2	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7197226	7197299	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7197300	7197394	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7197395	7197458	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7197395	7197458	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7197459	7197569	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7197570	7197698	0.81	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7197570	7197698	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7197699	7197874	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7197875	7197928	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7197875	7197928	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7197929	7198010	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7198011	7198067	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7198011	7198067	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7198068	7198186	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7198187	7198253	1	-	1	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7198187	7198253	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7198254	7198393	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7198394	7198454	1	-	2	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7198394	7198454	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7198455	7198543	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7198544	7198616	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7198544	7198616	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7198617	7198708	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7198709	7198780	0.92	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7198709	7198780	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7198781	7198896	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7198897	7198952	0.81	-	2	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7198897	7198952	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7198953	7199042	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7199043	7199110	1	-	1	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7199043	7199110	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7199111	7199224	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7199225	7199267	1	-	2	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7199225	7199267	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7199268	7199400	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7199401	7199497	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7199401	7199497	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7199498	7199576	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7199577	7199732	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7199577	7199732	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7199733	7199816	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7199817	7199864	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7199817	7199864	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7199865	7199955	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7199956	7200037	1	-	1	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7199956	7200037	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7200038	7200141	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7200142	7200218	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7200142	7200218	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7200219	7200291	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7200292	7200354	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7200292	7200354	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7200355	7200444	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7200445	7200521	1	-	2	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7200445	7200521	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	intron	7200522	7200605	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	CDS	7200606	7200651	1	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	exon	7200606	7200651	.	-	.	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
Ledus.S2	AUGUSTUS	start_codon	7200649	7200651	.	-	0	transcript_id "Ledus.S2G094400.t1"; gene_id "Ledus.S2G094400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9962.t1 is derived from g10992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11586532	11588530	.	+	.	Ledus.S3G143900
Ledus.S3	AUGUSTUS	transcript	11586532	11588530	.	+	.	transcript_id "Ledus.S3G143900.t1"; gene_id "Ledus.S3G143900"
Ledus.S3	AUGUSTUS	start_codon	11586532	11586534	.	+	0	transcript_id "Ledus.S3G143900.t1"; gene_id "Ledus.S3G143900"
Ledus.S3	AUGUSTUS	CDS	11586532	11586780	1	+	0	transcript_id "Ledus.S3G143900.t1"; gene_id "Ledus.S3G143900"
Ledus.S3	AUGUSTUS	exon	11586532	11586780	.	+	.	transcript_id "Ledus.S3G143900.t1"; gene_id "Ledus.S3G143900"
Ledus.S3	AUGUSTUS	intron	11586781	11586878	.	+	.	transcript_id "Ledus.S3G143900.t1"; gene_id "Ledus.S3G143900"
Ledus.S3	AUGUSTUS	CDS	11586879	11587310	0.96	+	0	transcript_id "Ledus.S3G143900.t1"; gene_id "Ledus.S3G143900"
Ledus.S3	AUGUSTUS	exon	11586879	11587310	.	+	.	transcript_id "Ledus.S3G143900.t1"; gene_id "Ledus.S3G143900"
Ledus.S3	AUGUSTUS	intron	11587311	11587414	.	+	.	transcript_id "Ledus.S3G143900.t1"; gene_id "Ledus.S3G143900"
Ledus.S3	AUGUSTUS	CDS	11587415	11588530	0.96	+	0	transcript_id "Ledus.S3G143900.t1"; gene_id "Ledus.S3G143900"
Ledus.S3	AUGUSTUS	exon	11587415	11588530	.	+	.	transcript_id "Ledus.S3G143900.t1"; gene_id "Ledus.S3G143900"
Ledus.S3	AUGUSTUS	stop_codon	11588531	11588533	.	+	0	transcript_id "Ledus.S3G143900.t1"; gene_id "Ledus.S3G143900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2239.t1 is derived from g9102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16322575	16323095	.	-	.	Ledus.S2G212100
Ledus.S2	AUGUSTUS	transcript	16322575	16323095	.	-	.	transcript_id "Ledus.S2G212100.t1"; gene_id "Ledus.S2G212100"
Ledus.S2	AUGUSTUS	stop_codon	16322572	16322574	.	-	0	transcript_id "Ledus.S2G212100.t1"; gene_id "Ledus.S2G212100"
Ledus.S2	AUGUSTUS	CDS	16322575	16322877	0.47	-	0	transcript_id "Ledus.S2G212100.t1"; gene_id "Ledus.S2G212100"
Ledus.S2	AUGUSTUS	exon	16322575	16322877	.	-	.	transcript_id "Ledus.S2G212100.t1"; gene_id "Ledus.S2G212100"
Ledus.S2	AUGUSTUS	intron	16322878	16322960	.	-	.	transcript_id "Ledus.S2G212100.t1"; gene_id "Ledus.S2G212100"
Ledus.S2	AUGUSTUS	CDS	16322961	16323095	0.57	-	0	transcript_id "Ledus.S2G212100.t1"; gene_id "Ledus.S2G212100"
Ledus.S2	AUGUSTUS	exon	16322961	16323095	.	-	.	transcript_id "Ledus.S2G212100.t1"; gene_id "Ledus.S2G212100"
Ledus.S2	AUGUSTUS	start_codon	16323093	16323095	.	-	0	transcript_id "Ledus.S2G212100.t1"; gene_id "Ledus.S2G212100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10510.t1 is derived from g11540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15728007	15731087	.	+	.	Ledus.S3G198700
Ledus.S3	AUGUSTUS	transcript	15728007	15731087	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	start_codon	15728007	15728009	.	+	0	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	CDS	15728007	15728025	0.96	+	0	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	exon	15728007	15728025	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	intron	15728026	15728105	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	CDS	15728106	15728341	0.99	+	2	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	exon	15728106	15728341	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	intron	15728342	15728727	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	CDS	15728728	15728775	0.8	+	0	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	exon	15728728	15728775	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	intron	15728776	15728847	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	CDS	15728848	15728952	1	+	0	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	exon	15728848	15728952	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	intron	15728953	15729121	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	CDS	15729122	15729263	0.87	+	0	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	exon	15729122	15729263	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	intron	15729264	15729518	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	CDS	15729519	15729678	0.31	+	2	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	exon	15729519	15729678	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	intron	15729679	15729946	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	CDS	15729947	15729990	0.9	+	1	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	exon	15729947	15729990	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	intron	15729991	15730145	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	CDS	15730146	15730213	0.94	+	2	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	exon	15730146	15730213	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	intron	15730214	15730314	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	CDS	15730315	15730368	1	+	0	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	exon	15730315	15730368	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	intron	15730369	15730453	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	CDS	15730454	15730552	0.95	+	0	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	exon	15730454	15730552	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	intron	15730553	15730716	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	CDS	15730717	15730755	1	+	0	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	exon	15730717	15730755	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	intron	15730756	15730958	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	CDS	15730959	15731087	1	+	0	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	exon	15730959	15731087	.	+	.	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
Ledus.S3	AUGUSTUS	stop_codon	15731088	15731090	.	+	0	transcript_id "Ledus.S3G198700.t1"; gene_id "Ledus.S3G198700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10144.t1 is derived from g11174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13142336	13143161	.	-	.	Ledus.S3G162100
Ledus.S3	AUGUSTUS	transcript	13142336	13143161	.	-	.	transcript_id "Ledus.S3G162100.t1"; gene_id "Ledus.S3G162100"
Ledus.S3	AUGUSTUS	stop_codon	13142333	13142335	.	-	0	transcript_id "Ledus.S3G162100.t1"; gene_id "Ledus.S3G162100"
Ledus.S3	AUGUSTUS	CDS	13142336	13142518	0.99	-	0	transcript_id "Ledus.S3G162100.t1"; gene_id "Ledus.S3G162100"
Ledus.S3	AUGUSTUS	exon	13142336	13142518	.	-	.	transcript_id "Ledus.S3G162100.t1"; gene_id "Ledus.S3G162100"
Ledus.S3	AUGUSTUS	intron	13142519	13142618	.	-	.	transcript_id "Ledus.S3G162100.t1"; gene_id "Ledus.S3G162100"
Ledus.S3	AUGUSTUS	CDS	13142619	13142873	1	-	0	transcript_id "Ledus.S3G162100.t1"; gene_id "Ledus.S3G162100"
Ledus.S3	AUGUSTUS	exon	13142619	13142873	.	-	.	transcript_id "Ledus.S3G162100.t1"; gene_id "Ledus.S3G162100"
Ledus.S3	AUGUSTUS	intron	13142874	13142960	.	-	.	transcript_id "Ledus.S3G162100.t1"; gene_id "Ledus.S3G162100"
Ledus.S3	AUGUSTUS	CDS	13142961	13143161	0.81	-	0	transcript_id "Ledus.S3G162100.t1"; gene_id "Ledus.S3G162100"
Ledus.S3	AUGUSTUS	exon	13142961	13143161	.	-	.	transcript_id "Ledus.S3G162100.t1"; gene_id "Ledus.S3G162100"
Ledus.S3	AUGUSTUS	start_codon	13143159	13143161	.	-	0	transcript_id "Ledus.S3G162100.t1"; gene_id "Ledus.S3G162100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12378.t1 is derived from g5999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11549216	11549566	.	-	.	Ledus.S4G153400
Ledus.S4	AUGUSTUS	transcript	11549216	11549566	.	-	.	transcript_id "Ledus.S4G153400.t1"; gene_id "Ledus.S4G153400"
Ledus.S4	AUGUSTUS	stop_codon	11549213	11549215	.	-	0	transcript_id "Ledus.S4G153400.t1"; gene_id "Ledus.S4G153400"
Ledus.S4	AUGUSTUS	CDS	11549216	11549566	0.45	-	0	transcript_id "Ledus.S4G153400.t1"; gene_id "Ledus.S4G153400"
Ledus.S4	AUGUSTUS	exon	11549216	11549566	.	-	.	transcript_id "Ledus.S4G153400.t1"; gene_id "Ledus.S4G153400"
Ledus.S4	AUGUSTUS	start_codon	11549564	11549566	.	-	0	transcript_id "Ledus.S4G153400.t1"; gene_id "Ledus.S4G153400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4678.t1 is derived from g2116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18945980	18947104	.	-	.	Ledus.S1G209900
Ledus.S1	AUGUSTUS	transcript	18945980	18947104	.	-	.	transcript_id "Ledus.S1G209900.t1"; gene_id "Ledus.S1G209900"
Ledus.S1	AUGUSTUS	stop_codon	18945977	18945979	.	-	0	transcript_id "Ledus.S1G209900.t1"; gene_id "Ledus.S1G209900"
Ledus.S1	AUGUSTUS	CDS	18945980	18946196	0.75	-	1	transcript_id "Ledus.S1G209900.t1"; gene_id "Ledus.S1G209900"
Ledus.S1	AUGUSTUS	exon	18945980	18946196	.	-	.	transcript_id "Ledus.S1G209900.t1"; gene_id "Ledus.S1G209900"
Ledus.S1	AUGUSTUS	intron	18946197	18946282	.	-	.	transcript_id "Ledus.S1G209900.t1"; gene_id "Ledus.S1G209900"
Ledus.S1	AUGUSTUS	CDS	18946283	18946293	0.74	-	0	transcript_id "Ledus.S1G209900.t1"; gene_id "Ledus.S1G209900"
Ledus.S1	AUGUSTUS	exon	18946283	18946293	.	-	.	transcript_id "Ledus.S1G209900.t1"; gene_id "Ledus.S1G209900"
Ledus.S1	AUGUSTUS	intron	18946294	18946456	.	-	.	transcript_id "Ledus.S1G209900.t1"; gene_id "Ledus.S1G209900"
Ledus.S1	AUGUSTUS	CDS	18946457	18947104	0.53	-	0	transcript_id "Ledus.S1G209900.t1"; gene_id "Ledus.S1G209900"
Ledus.S1	AUGUSTUS	exon	18946457	18947104	.	-	.	transcript_id "Ledus.S1G209900.t1"; gene_id "Ledus.S1G209900"
Ledus.S1	AUGUSTUS	start_codon	18947102	18947104	.	-	0	transcript_id "Ledus.S1G209900.t1"; gene_id "Ledus.S1G209900"
# This transcript jg12923.t2 is derived from g4415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12924.t1 is derived from g4416.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	354780	356925	.	+	.	Ledus.C9G003200
Ledus.C9	AUGUSTUS	transcript	354780	356925	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	start_codon	354780	354782	.	+	0	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	CDS	354780	354935	0.99	+	0	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	exon	354780	354935	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	intron	354936	355021	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	CDS	355022	355127	1	+	0	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	exon	355022	355127	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	intron	355128	355211	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	CDS	355212	355285	1	+	2	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	exon	355212	355285	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	intron	355286	355360	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	CDS	355361	355447	1	+	0	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	exon	355361	355447	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	intron	355448	355549	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	CDS	355550	355604	1	+	0	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	exon	355550	355604	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	intron	355605	355686	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	CDS	355687	355748	1	+	2	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	exon	355687	355748	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	intron	355749	355843	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	CDS	355844	355942	0.99	+	0	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	exon	355844	355942	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	intron	355943	356044	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	CDS	356045	356106	0.99	+	0	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	exon	356045	356106	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	intron	356107	356205	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	CDS	356206	356620	1	+	1	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	exon	356206	356620	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	intron	356621	356727	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	CDS	356728	356925	1	+	0	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	exon	356728	356925	.	+	.	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
Ledus.C9	AUGUSTUS	stop_codon	356926	356928	.	+	0	transcript_id "Ledus.C9G003200.t1"; gene_id "Ledus.C9G003200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10022.t1 is derived from g11052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11922104	11923627	.	-	.	Ledus.S3G149900
Ledus.S3	AUGUSTUS	transcript	11922104	11923627	.	-	.	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	stop_codon	11922101	11922103	.	-	0	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	CDS	11922104	11922226	0.68	-	0	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	exon	11922104	11922226	.	-	.	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	intron	11922227	11922677	.	-	.	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	CDS	11922678	11922698	1	-	0	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	exon	11922678	11922698	.	-	.	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	intron	11922699	11922938	.	-	.	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	CDS	11922939	11923000	1	-	2	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	exon	11922939	11923000	.	-	.	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	intron	11923001	11923182	.	-	.	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	CDS	11923183	11923238	1	-	1	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	exon	11923183	11923238	.	-	.	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	intron	11923239	11923359	.	-	.	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	CDS	11923360	11923451	1	-	0	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	exon	11923360	11923451	.	-	.	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	intron	11923452	11923540	.	-	.	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	CDS	11923541	11923627	0.97	-	0	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	exon	11923541	11923627	.	-	.	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	start_codon	11923625	11923627	.	-	0	transcript_id "Ledus.S3G149900.t1"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	transcript	11922104	11923627	.	-	.	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	stop_codon	11922101	11922103	.	-	0	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	CDS	11922104	11922232	0.67	-	0	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	exon	11922104	11922232	.	-	.	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	intron	11922233	11922677	.	-	.	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	CDS	11922678	11922698	1	-	0	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	exon	11922678	11922698	.	-	.	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	intron	11922699	11922938	.	-	.	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	CDS	11922939	11923000	1	-	2	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	exon	11922939	11923000	.	-	.	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	intron	11923001	11923182	.	-	.	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	CDS	11923183	11923238	1	-	1	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	exon	11923183	11923238	.	-	.	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	intron	11923239	11923359	.	-	.	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	CDS	11923360	11923451	1	-	0	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	exon	11923360	11923451	.	-	.	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	intron	11923452	11923540	.	-	.	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	CDS	11923541	11923627	0.93	-	0	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	exon	11923541	11923627	.	-	.	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
Ledus.S3	AUGUSTUS	start_codon	11923625	11923627	.	-	0	transcript_id "Ledus.S3G149900.t2"; gene_id "Ledus.S3G149900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10151.t1 is derived from g11181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13237986	13238291	.	-	.	Ledus.S3G162800
Ledus.S3	AUGUSTUS	transcript	13237986	13238291	.	-	.	transcript_id "Ledus.S3G162800.t1"; gene_id "Ledus.S3G162800"
Ledus.S3	AUGUSTUS	stop_codon	13237983	13237985	.	-	0	transcript_id "Ledus.S3G162800.t1"; gene_id "Ledus.S3G162800"
Ledus.S3	AUGUSTUS	CDS	13237986	13238291	0.87	-	0	transcript_id "Ledus.S3G162800.t1"; gene_id "Ledus.S3G162800"
Ledus.S3	AUGUSTUS	exon	13237986	13238291	.	-	.	transcript_id "Ledus.S3G162800.t1"; gene_id "Ledus.S3G162800"
Ledus.S3	AUGUSTUS	start_codon	13238289	13238291	.	-	0	transcript_id "Ledus.S3G162800.t1"; gene_id "Ledus.S3G162800"
# This transcript jg2056.t2 is derived from g8919.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2057.t1 is derived from g8920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14377816	14381575	.	+	.	Ledus.S2G193900
Ledus.S2	AUGUSTUS	transcript	14377816	14381575	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	start_codon	14377816	14377818	.	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14377816	14378099	0.75	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14377816	14378099	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14378100	14378330	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14378331	14378377	0.28	+	1	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14378331	14378377	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14378378	14378744	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14378745	14378947	0.71	+	2	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14378745	14378947	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14378948	14379077	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14379078	14379140	1	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14379078	14379140	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14379141	14379223	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14379224	14379313	1	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14379224	14379313	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14379314	14379407	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14379408	14379467	1	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14379408	14379467	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14379468	14379566	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14379567	14379632	0.98	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14379567	14379632	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14379633	14379742	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14379743	14379808	1	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14379743	14379808	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14379809	14379923	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14379924	14379999	1	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14379924	14379999	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14380000	14380083	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14380084	14380148	1	+	2	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14380084	14380148	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14380149	14380298	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14380299	14380394	0.97	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14380299	14380394	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14380395	14380499	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14380500	14380580	1	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14380500	14380580	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14380581	14380669	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14380670	14380754	1	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14380670	14380754	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14380755	14380856	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14380857	14380966	1	+	2	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14380857	14380966	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14380967	14381065	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14381066	14381125	1	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14381066	14381125	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	intron	14381126	14381218	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	CDS	14381219	14381575	0.68	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	exon	14381219	14381575	.	+	.	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
Ledus.S2	AUGUSTUS	stop_codon	14381576	14381578	.	+	0	transcript_id "Ledus.S2G193900.t1"; gene_id "Ledus.S2G193900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1066.t1 is derived from g7927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7212090	7213207	.	+	.	Ledus.S2G094800
Ledus.S2	AUGUSTUS	transcript	7212090	7213207	.	+	.	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	start_codon	7212090	7212092	.	+	0	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	CDS	7212090	7212430	0.31	+	0	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	exon	7212090	7212430	.	+	.	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	intron	7212431	7212522	.	+	.	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	CDS	7212523	7212748	0.38	+	1	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	exon	7212523	7212748	.	+	.	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	intron	7212749	7212950	.	+	.	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	CDS	7212951	7213065	0.59	+	0	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	exon	7212951	7213065	.	+	.	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	intron	7213066	7213145	.	+	.	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	CDS	7213146	7213207	0.98	+	2	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	exon	7213146	7213207	.	+	.	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
Ledus.S2	AUGUSTUS	stop_codon	7213208	7213210	.	+	0	transcript_id "Ledus.S2G094800.t1"; gene_id "Ledus.S2G094800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12774.t1 is derived from g6396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14429486	14434261	.	+	.	Ledus.S4G193000
Ledus.S4	AUGUSTUS	transcript	14429486	14434261	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	start_codon	14429486	14429488	.	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14429486	14429519	0.68	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14429486	14429519	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14429520	14429671	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14429672	14429816	1	+	2	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14429672	14429816	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14429817	14429916	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14429917	14430103	1	+	1	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14429917	14430103	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14430104	14430237	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14430238	14430330	1	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14430238	14430330	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14430331	14430565	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14430566	14430634	1	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14430566	14430634	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14430635	14430789	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14430790	14430859	1	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14430790	14430859	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14430860	14431050	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14431051	14431115	1	+	2	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14431051	14431115	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14431116	14431212	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14431213	14431267	1	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14431213	14431267	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14431268	14431347	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14431348	14431463	1	+	2	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14431348	14431463	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14431464	14431653	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14431654	14431769	1	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14431654	14431769	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14431770	14431934	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14431935	14432004	1	+	1	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14431935	14432004	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14432005	14432125	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14432126	14432230	0.82	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14432126	14432230	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14432231	14432432	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14432433	14432519	1	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14432433	14432519	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14432520	14432730	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14432731	14432876	1	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14432731	14432876	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14432877	14432991	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14432992	14433103	1	+	1	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14432992	14433103	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14433104	14433222	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14433223	14433306	0.98	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14433223	14433306	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14433307	14433413	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14433414	14433494	1	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14433414	14433494	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14433495	14433595	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14433596	14433820	0.99	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14433596	14433820	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14433821	14433929	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14433930	14434052	0.99	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14433930	14434052	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	intron	14434053	14434147	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	CDS	14434148	14434261	0.8	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	exon	14434148	14434261	.	+	.	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
Ledus.S4	AUGUSTUS	stop_codon	14434262	14434264	.	+	0	transcript_id "Ledus.S4G193000.t1"; gene_id "Ledus.S4G193000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6747.t1 is derived from g4190.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33721799	33725236	.	-	.	Ledus.S1G416800
Ledus.S1	AUGUSTUS	transcript	33721799	33725236	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	stop_codon	33721796	33721798	.	-	0	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33721799	33722492	0.99	-	1	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33721799	33722492	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33722493	33722568	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33722569	33722672	1	-	0	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33722569	33722672	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33722673	33722942	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33722943	33723029	1	-	0	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33722943	33723029	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33723030	33723292	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33723293	33723532	0.96	-	0	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33723293	33723532	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33723533	33723639	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33723640	33723780	0.96	-	0	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33723640	33723780	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33723781	33723889	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33723890	33723940	0.96	-	0	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33723890	33723940	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33723941	33724035	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33724036	33724237	1	-	1	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33724036	33724237	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33724238	33724370	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33724371	33724531	1	-	0	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33724371	33724531	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33724532	33724624	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33724625	33725236	0.62	-	0	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33724625	33725236	.	-	.	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	start_codon	33725234	33725236	.	-	0	transcript_id "Ledus.S1G416800.t1"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	transcript	33721799	33725236	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	stop_codon	33721796	33721798	.	-	0	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33721799	33722492	0.98	-	1	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33721799	33722492	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33722493	33722568	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33722569	33722672	1	-	0	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33722569	33722672	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33722673	33722942	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33722943	33723029	1	-	0	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33722943	33723029	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33723030	33723292	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33723293	33723532	0.97	-	0	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33723293	33723532	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33723533	33723639	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33723640	33723780	0.95	-	0	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33723640	33723780	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33723781	33723889	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33723890	33723937	0.96	-	0	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33723890	33723937	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33723938	33724035	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33724036	33724237	1	-	1	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33724036	33724237	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33724238	33724370	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33724371	33724531	1	-	0	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33724371	33724531	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	intron	33724532	33724624	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	CDS	33724625	33725236	0.45	-	0	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	exon	33724625	33725236	.	-	.	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
Ledus.S1	AUGUSTUS	start_codon	33725234	33725236	.	-	0	transcript_id "Ledus.S1G416800.t2"; gene_id "Ledus.S1G416800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10292.t1 is derived from g11322.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14102275	14103306	.	+	.	Ledus.S3G176900
Ledus.S3	AUGUSTUS	transcript	14102275	14103124	.	+	.	transcript_id "Ledus.S3G176900.t1"; gene_id "Ledus.S3G176900"
Ledus.S3	AUGUSTUS	start_codon	14102275	14102277	.	+	0	transcript_id "Ledus.S3G176900.t1"; gene_id "Ledus.S3G176900"
Ledus.S3	AUGUSTUS	CDS	14102275	14103029	0.37	+	0	transcript_id "Ledus.S3G176900.t1"; gene_id "Ledus.S3G176900"
Ledus.S3	AUGUSTUS	exon	14102275	14103029	.	+	.	transcript_id "Ledus.S3G176900.t1"; gene_id "Ledus.S3G176900"
Ledus.S3	AUGUSTUS	intron	14103030	14103117	.	+	.	transcript_id "Ledus.S3G176900.t1"; gene_id "Ledus.S3G176900"
Ledus.S3	AUGUSTUS	CDS	14103118	14103124	0.53	+	1	transcript_id "Ledus.S3G176900.t1"; gene_id "Ledus.S3G176900"
Ledus.S3	AUGUSTUS	exon	14103118	14103124	.	+	.	transcript_id "Ledus.S3G176900.t1"; gene_id "Ledus.S3G176900"
Ledus.S3	AUGUSTUS	stop_codon	14103125	14103127	.	+	0	transcript_id "Ledus.S3G176900.t1"; gene_id "Ledus.S3G176900"
Ledus.S3	AUGUSTUS	transcript	14102275	14103306	.	+	.	transcript_id "Ledus.S3G176900.t2"; gene_id "Ledus.S3G176900"
Ledus.S3	AUGUSTUS	start_codon	14102275	14102277	.	+	0	transcript_id "Ledus.S3G176900.t2"; gene_id "Ledus.S3G176900"
Ledus.S3	AUGUSTUS	CDS	14102275	14103306	0.75	+	0	transcript_id "Ledus.S3G176900.t2"; gene_id "Ledus.S3G176900"
Ledus.S3	AUGUSTUS	exon	14102275	14103306	.	+	.	transcript_id "Ledus.S3G176900.t2"; gene_id "Ledus.S3G176900"
Ledus.S3	AUGUSTUS	stop_codon	14103307	14103309	.	+	0	transcript_id "Ledus.S3G176900.t2"; gene_id "Ledus.S3G176900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12344.t1 is derived from g5965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11326264	11327292	.	-	.	Ledus.S4G150000
Ledus.S4	AUGUSTUS	transcript	11326264	11327292	.	-	.	transcript_id "Ledus.S4G150000.t1"; gene_id "Ledus.S4G150000"
Ledus.S4	AUGUSTUS	stop_codon	11326261	11326263	.	-	0	transcript_id "Ledus.S4G150000.t1"; gene_id "Ledus.S4G150000"
Ledus.S4	AUGUSTUS	CDS	11326264	11327292	1	-	0	transcript_id "Ledus.S4G150000.t1"; gene_id "Ledus.S4G150000"
Ledus.S4	AUGUSTUS	exon	11326264	11327292	.	-	.	transcript_id "Ledus.S4G150000.t1"; gene_id "Ledus.S4G150000"
Ledus.S4	AUGUSTUS	start_codon	11327290	11327292	.	-	0	transcript_id "Ledus.S4G150000.t1"; gene_id "Ledus.S4G150000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10046.t1 is derived from g11076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12170038	12173695	.	-	.	Ledus.S3G152300
Ledus.S3	AUGUSTUS	transcript	12170038	12173695	.	-	.	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	stop_codon	12170035	12170037	.	-	0	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	CDS	12170038	12170069	0.99	-	2	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	exon	12170038	12170069	.	-	.	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	intron	12170070	12170290	.	-	.	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	CDS	12170291	12170371	1	-	2	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	exon	12170291	12170371	.	-	.	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	intron	12170372	12170484	.	-	.	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	CDS	12170485	12170610	0.99	-	2	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	exon	12170485	12170610	.	-	.	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	intron	12170611	12170797	.	-	.	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	CDS	12170798	12171280	0.97	-	2	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	exon	12170798	12171280	.	-	.	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	intron	12171281	12171451	.	-	.	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	CDS	12171452	12172369	0.94	-	2	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	exon	12171452	12172369	.	-	.	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	intron	12172370	12172947	.	-	.	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	CDS	12172948	12173695	0.89	-	0	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	exon	12172948	12173695	.	-	.	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
Ledus.S3	AUGUSTUS	start_codon	12173693	12173695	.	-	0	transcript_id "Ledus.S3G152300.t1"; gene_id "Ledus.S3G152300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9612.t1 is derived from g10642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8410621	8412477	.	+	.	Ledus.S3G108900
Ledus.S3	AUGUSTUS	transcript	8410621	8412477	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	start_codon	8410621	8410623	.	+	0	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	CDS	8410621	8410731	0.95	+	0	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	exon	8410621	8410731	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	intron	8410732	8410952	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	CDS	8410953	8411021	1	+	0	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	exon	8410953	8411021	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	intron	8411022	8411107	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	CDS	8411108	8411194	1	+	0	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	exon	8411108	8411194	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	intron	8411195	8411327	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	CDS	8411328	8411434	1	+	0	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	exon	8411328	8411434	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	intron	8411435	8411525	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	CDS	8411526	8411704	0.78	+	1	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	exon	8411526	8411704	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	intron	8411705	8411789	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	CDS	8411790	8411866	1	+	2	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	exon	8411790	8411866	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	intron	8411867	8411974	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	CDS	8411975	8412088	0.97	+	0	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	exon	8411975	8412088	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	intron	8412089	8412177	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	CDS	8412178	8412477	0.96	+	0	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	exon	8412178	8412477	.	+	.	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
Ledus.S3	AUGUSTUS	stop_codon	8412478	8412480	.	+	0	transcript_id "Ledus.S3G108900.t1"; gene_id "Ledus.S3G108900"
# This transcript jg9755.t2 is derived from g10785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9756.t1 is derived from g10786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9601715	9605947	.	-	.	Ledus.S3G123300
Ledus.S3	AUGUSTUS	transcript	9601715	9605947	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	stop_codon	9601712	9601714	.	-	0	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9601715	9601811	1	-	1	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9601715	9601811	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	intron	9601812	9601886	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9601887	9602023	1	-	0	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9601887	9602023	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	intron	9602024	9602112	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9602113	9602391	0.99	-	0	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9602113	9602391	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	intron	9602392	9602520	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9602521	9602673	0.99	-	0	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9602521	9602673	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	intron	9602674	9602769	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9602770	9602814	0.86	-	0	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9602770	9602814	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	intron	9602815	9603308	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9603309	9603573	0.65	-	1	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9603309	9603573	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	intron	9603574	9603718	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9603719	9603851	0.89	-	2	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9603719	9603851	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	intron	9603852	9603983	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9603984	9604113	0.74	-	0	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9603984	9604113	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	intron	9604114	9604233	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9604234	9604305	0.96	-	0	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9604234	9604305	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	intron	9604306	9604426	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9604427	9604475	0.75	-	1	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9604427	9604475	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	intron	9604476	9604576	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9604577	9605087	0.93	-	2	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9604577	9605087	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	intron	9605088	9605319	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9605320	9605593	0.99	-	0	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9605320	9605593	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	intron	9605594	9605704	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	CDS	9605705	9605947	1	-	0	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	exon	9605705	9605947	.	-	.	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
Ledus.S3	AUGUSTUS	start_codon	9605945	9605947	.	-	0	transcript_id "Ledus.S3G123300.t1"; gene_id "Ledus.S3G123300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1365.t1 is derived from g8226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9480270	9481340	.	+	.	Ledus.S2G124700
Ledus.S2	AUGUSTUS	transcript	9480270	9481340	.	+	.	transcript_id "Ledus.S2G124700.t1"; gene_id "Ledus.S2G124700"
Ledus.S2	AUGUSTUS	start_codon	9480270	9480272	.	+	0	transcript_id "Ledus.S2G124700.t1"; gene_id "Ledus.S2G124700"
Ledus.S2	AUGUSTUS	CDS	9480270	9481340	0.85	+	0	transcript_id "Ledus.S2G124700.t1"; gene_id "Ledus.S2G124700"
Ledus.S2	AUGUSTUS	exon	9480270	9481340	.	+	.	transcript_id "Ledus.S2G124700.t1"; gene_id "Ledus.S2G124700"
Ledus.S2	AUGUSTUS	stop_codon	9481341	9481343	.	+	0	transcript_id "Ledus.S2G124700.t1"; gene_id "Ledus.S2G124700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4071.t1 is derived from g1507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14461086	14461741	.	+	.	Ledus.S1G149200
Ledus.S1	AUGUSTUS	transcript	14461086	14461741	.	+	.	transcript_id "Ledus.S1G149200.t1"; gene_id "Ledus.S1G149200"
Ledus.S1	AUGUSTUS	start_codon	14461086	14461088	.	+	0	transcript_id "Ledus.S1G149200.t1"; gene_id "Ledus.S1G149200"
Ledus.S1	AUGUSTUS	CDS	14461086	14461502	0.01	+	0	transcript_id "Ledus.S1G149200.t1"; gene_id "Ledus.S1G149200"
Ledus.S1	AUGUSTUS	exon	14461086	14461502	.	+	.	transcript_id "Ledus.S1G149200.t1"; gene_id "Ledus.S1G149200"
Ledus.S1	AUGUSTUS	intron	14461503	14461735	.	+	.	transcript_id "Ledus.S1G149200.t1"; gene_id "Ledus.S1G149200"
Ledus.S1	AUGUSTUS	CDS	14461736	14461741	0.01	+	0	transcript_id "Ledus.S1G149200.t1"; gene_id "Ledus.S1G149200"
Ledus.S1	AUGUSTUS	exon	14461736	14461741	.	+	.	transcript_id "Ledus.S1G149200.t1"; gene_id "Ledus.S1G149200"
Ledus.S1	AUGUSTUS	stop_codon	14461742	14461744	.	+	0	transcript_id "Ledus.S1G149200.t1"; gene_id "Ledus.S1G149200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12151.t1 is derived from g5770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10010465	10016485	.	+	.	Ledus.S4G130700
Ledus.S4	AUGUSTUS	transcript	10010465	10016485	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	start_codon	10010465	10010467	.	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10010465	10010572	0.92	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10010465	10010572	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10010573	10010729	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10010730	10010778	0.97	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10010730	10010778	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10010779	10010932	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10010933	10010943	0.92	+	2	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10010933	10010943	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10010944	10011039	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10011040	10011116	0.89	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10011040	10011116	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10011117	10011270	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10011271	10011341	0.85	+	1	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10011271	10011341	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10011342	10011468	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10011469	10011613	0.92	+	2	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10011469	10011613	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10011614	10011815	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10011816	10012041	1	+	1	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10011816	10012041	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10012042	10012197	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10012198	10012446	0.99	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10012198	10012446	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10012447	10012661	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10012662	10012777	1	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10012662	10012777	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10012778	10012939	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10012940	10013035	1	+	1	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10012940	10013035	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10013036	10013132	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10013133	10013220	0.99	+	1	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10013133	10013220	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10013221	10013326	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10013327	10013559	0.96	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10013327	10013559	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10013560	10013681	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10013682	10013866	1	+	1	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10013682	10013866	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10013867	10013966	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10013967	10014166	1	+	2	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10013967	10014166	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10014167	10014295	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10014296	10014628	1	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10014296	10014628	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10014629	10014772	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10014773	10014874	1	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10014773	10014874	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10014875	10014961	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10014962	10015259	0.89	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10014962	10015259	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10015260	10015420	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10015421	10015569	1	+	2	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10015421	10015569	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10015570	10015659	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10015660	10015944	1	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10015660	10015944	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10015945	10016092	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10016093	10016139	0.94	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10016093	10016139	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	intron	10016140	10016334	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	CDS	10016335	10016485	0.7	+	1	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	exon	10016335	10016485	.	+	.	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
Ledus.S4	AUGUSTUS	stop_codon	10016486	10016488	.	+	0	transcript_id "Ledus.S4G130700.t1"; gene_id "Ledus.S4G130700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10744.t1 is derived from g11775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17452347	17454933	.	-	.	Ledus.S3G222100
Ledus.S3	AUGUSTUS	transcript	17452347	17454933	.	-	.	transcript_id "Ledus.S3G222100.t1"; gene_id "Ledus.S3G222100"
Ledus.S3	AUGUSTUS	stop_codon	17452344	17452346	.	-	0	transcript_id "Ledus.S3G222100.t1"; gene_id "Ledus.S3G222100"
Ledus.S3	AUGUSTUS	CDS	17452347	17452535	0.79	-	0	transcript_id "Ledus.S3G222100.t1"; gene_id "Ledus.S3G222100"
Ledus.S3	AUGUSTUS	exon	17452347	17452535	.	-	.	transcript_id "Ledus.S3G222100.t1"; gene_id "Ledus.S3G222100"
Ledus.S3	AUGUSTUS	intron	17452536	17452674	.	-	.	transcript_id "Ledus.S3G222100.t1"; gene_id "Ledus.S3G222100"
Ledus.S3	AUGUSTUS	CDS	17452675	17454933	0.85	-	0	transcript_id "Ledus.S3G222100.t1"; gene_id "Ledus.S3G222100"
Ledus.S3	AUGUSTUS	exon	17452675	17454933	.	-	.	transcript_id "Ledus.S3G222100.t1"; gene_id "Ledus.S3G222100"
Ledus.S3	AUGUSTUS	start_codon	17454931	17454933	.	-	0	transcript_id "Ledus.S3G222100.t1"; gene_id "Ledus.S3G222100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7905.t1 is derived from g12576.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7761587	7762343	.	-	.	Ledus.S5G068300
Ledus.S5	AUGUSTUS	transcript	7761587	7762343	.	-	.	transcript_id "Ledus.S5G068300.t1"; gene_id "Ledus.S5G068300"
Ledus.S5	AUGUSTUS	stop_codon	7761584	7761586	.	-	0	transcript_id "Ledus.S5G068300.t1"; gene_id "Ledus.S5G068300"
Ledus.S5	AUGUSTUS	CDS	7761587	7761701	0.91	-	1	transcript_id "Ledus.S5G068300.t1"; gene_id "Ledus.S5G068300"
Ledus.S5	AUGUSTUS	exon	7761587	7761701	.	-	.	transcript_id "Ledus.S5G068300.t1"; gene_id "Ledus.S5G068300"
Ledus.S5	AUGUSTUS	intron	7761702	7761859	.	-	.	transcript_id "Ledus.S5G068300.t1"; gene_id "Ledus.S5G068300"
Ledus.S5	AUGUSTUS	CDS	7761860	7762113	0.93	-	0	transcript_id "Ledus.S5G068300.t1"; gene_id "Ledus.S5G068300"
Ledus.S5	AUGUSTUS	exon	7761860	7762113	.	-	.	transcript_id "Ledus.S5G068300.t1"; gene_id "Ledus.S5G068300"
Ledus.S5	AUGUSTUS	intron	7762114	7762238	.	-	.	transcript_id "Ledus.S5G068300.t1"; gene_id "Ledus.S5G068300"
Ledus.S5	AUGUSTUS	CDS	7762239	7762343	0.52	-	0	transcript_id "Ledus.S5G068300.t1"; gene_id "Ledus.S5G068300"
Ledus.S5	AUGUSTUS	exon	7762239	7762343	.	-	.	transcript_id "Ledus.S5G068300.t1"; gene_id "Ledus.S5G068300"
Ledus.S5	AUGUSTUS	start_codon	7762341	7762343	.	-	0	transcript_id "Ledus.S5G068300.t1"; gene_id "Ledus.S5G068300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4976.t1 is derived from g2414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20946183	20949317	.	-	.	Ledus.S1G239700
Ledus.S1	AUGUSTUS	transcript	20946183	20949317	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	stop_codon	20946180	20946182	.	-	0	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	CDS	20946183	20946450	0.69	-	1	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	exon	20946183	20946450	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	intron	20946451	20946540	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	CDS	20946541	20946587	1	-	0	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	exon	20946541	20946587	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	intron	20946588	20946863	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	CDS	20946864	20947249	1	-	2	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	exon	20946864	20947249	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	intron	20947250	20947327	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	CDS	20947328	20947494	1	-	1	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	exon	20947328	20947494	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	intron	20947495	20947640	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	CDS	20947641	20947714	1	-	0	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	exon	20947641	20947714	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	intron	20947715	20947906	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	CDS	20947907	20947994	1	-	1	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	exon	20947907	20947994	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	intron	20947995	20948110	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	CDS	20948111	20948250	1	-	0	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	exon	20948111	20948250	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	intron	20948251	20948387	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	CDS	20948388	20948474	1	-	0	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	exon	20948388	20948474	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	intron	20948475	20948564	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	CDS	20948565	20948678	0.96	-	0	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	exon	20948565	20948678	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	intron	20948679	20948780	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	CDS	20948781	20948864	0.95	-	0	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	exon	20948781	20948864	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	intron	20948865	20948940	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	CDS	20948941	20949017	1	-	2	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	exon	20948941	20949017	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	intron	20949018	20949142	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	CDS	20949143	20949317	0.96	-	0	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	exon	20949143	20949317	.	-	.	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
Ledus.S1	AUGUSTUS	start_codon	20949315	20949317	.	-	0	transcript_id "Ledus.S1G239700.t1"; gene_id "Ledus.S1G239700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5876.t1 is derived from g3318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27514117	27520558	.	+	.	Ledus.S1G329700
Ledus.S1	AUGUSTUS	transcript	27514117	27520558	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	start_codon	27514117	27514119	.	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27514117	27514351	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27514117	27514351	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27514352	27514566	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27514567	27514664	1	+	2	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27514567	27514664	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27514665	27514783	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27514784	27514950	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27514784	27514950	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27514951	27515123	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27515124	27515253	1	+	1	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27515124	27515253	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27515254	27515423	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27515424	27515534	0.98	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27515424	27515534	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27515535	27515635	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27515636	27515767	0.95	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27515636	27515767	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27515768	27515936	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27515937	27516020	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27515937	27516020	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27516021	27516156	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27516157	27516272	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27516157	27516272	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27516273	27516452	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27516453	27516564	1	+	1	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27516453	27516564	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27516565	27516790	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27516791	27516913	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27516791	27516913	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27516914	27517042	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27517043	27517119	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27517043	27517119	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27517120	27517208	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27517209	27517299	1	+	1	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27517209	27517299	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27517300	27517405	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27517406	27517537	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27517406	27517537	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27517538	27517635	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27517636	27517738	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27517636	27517738	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27517739	27517838	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27517839	27517962	1	+	2	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27517839	27517962	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27517963	27518141	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27518142	27518328	1	+	1	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27518142	27518328	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27518329	27518462	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27518463	27518515	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27518463	27518515	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27518516	27518622	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27518623	27518683	0.91	+	1	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27518623	27518683	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27518684	27518793	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27518794	27518875	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27518794	27518875	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27518876	27518960	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27518961	27519010	1	+	2	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27518961	27519010	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27519011	27519125	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27519126	27519212	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27519126	27519212	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27519213	27519342	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27519343	27519434	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27519343	27519434	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27519435	27519556	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27519557	27519584	1	+	1	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27519557	27519584	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27519585	27519726	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27519727	27519821	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27519727	27519821	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27519822	27520033	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27520034	27520115	1	+	1	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27520034	27520115	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27520116	27520200	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27520201	27520361	1	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27520201	27520361	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	intron	27520362	27520455	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	CDS	27520456	27520558	1	+	1	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	exon	27520456	27520558	.	+	.	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
Ledus.S1	AUGUSTUS	stop_codon	27520559	27520561	.	+	0	transcript_id "Ledus.S1G329700.t1"; gene_id "Ledus.S1G329700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3997.t1 is derived from g1433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13984358	13985201	.	+	.	Ledus.S1G141800
Ledus.S1	AUGUSTUS	transcript	13984430	13985201	.	+	.	transcript_id "Ledus.S1G141800.t1"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	start_codon	13984430	13984432	.	+	0	transcript_id "Ledus.S1G141800.t1"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	CDS	13984430	13984566	0.94	+	0	transcript_id "Ledus.S1G141800.t1"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	exon	13984430	13984566	.	+	.	transcript_id "Ledus.S1G141800.t1"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	intron	13984567	13984723	.	+	.	transcript_id "Ledus.S1G141800.t1"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	CDS	13984724	13985201	0.96	+	1	transcript_id "Ledus.S1G141800.t1"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	exon	13984724	13985201	.	+	.	transcript_id "Ledus.S1G141800.t1"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	stop_codon	13985202	13985204	.	+	0	transcript_id "Ledus.S1G141800.t1"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	transcript	13984358	13985201	.	+	.	transcript_id "Ledus.S1G141800.t2"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	start_codon	13984358	13984360	.	+	0	transcript_id "Ledus.S1G141800.t2"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	CDS	13984358	13984566	0.74	+	0	transcript_id "Ledus.S1G141800.t2"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	exon	13984358	13984566	.	+	.	transcript_id "Ledus.S1G141800.t2"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	intron	13984567	13984723	.	+	.	transcript_id "Ledus.S1G141800.t2"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	CDS	13984724	13985201	1	+	1	transcript_id "Ledus.S1G141800.t2"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	exon	13984724	13985201	.	+	.	transcript_id "Ledus.S1G141800.t2"; gene_id "Ledus.S1G141800"
Ledus.S1	AUGUSTUS	stop_codon	13985202	13985204	.	+	0	transcript_id "Ledus.S1G141800.t2"; gene_id "Ledus.S1G141800"
# This transcript jg5885.t2 is derived from g3327.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5886.t1 is derived from g3328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27593153	27595900	.	-	.	Ledus.S1G330700
Ledus.S1	AUGUSTUS	transcript	27593153	27595900	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	stop_codon	27593150	27593152	.	-	0	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	CDS	27593153	27593401	0.96	-	0	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	exon	27593153	27593401	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	intron	27593402	27593711	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	CDS	27593712	27593839	1	-	2	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	exon	27593712	27593839	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	intron	27593840	27593941	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	CDS	27593942	27594171	0.77	-	1	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	exon	27593942	27594171	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	intron	27594172	27594256	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	CDS	27594257	27594525	0.8	-	0	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	exon	27594257	27594525	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	intron	27594526	27594684	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	CDS	27594685	27594786	1	-	0	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	exon	27594685	27594786	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	intron	27594787	27594855	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	CDS	27594856	27595066	1	-	1	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	exon	27594856	27595066	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	intron	27595067	27595162	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	CDS	27595163	27595362	1	-	0	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	exon	27595163	27595362	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	intron	27595363	27595444	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	CDS	27595445	27595693	1	-	0	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	exon	27595445	27595693	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	intron	27595694	27595765	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	CDS	27595766	27595900	0.88	-	0	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	exon	27595766	27595900	.	-	.	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
Ledus.S1	AUGUSTUS	start_codon	27595898	27595900	.	-	0	transcript_id "Ledus.S1G330700.t1"; gene_id "Ledus.S1G330700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4862.t1 is derived from g2300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20423618	20425611	.	+	.	Ledus.S1G228300
Ledus.S1	AUGUSTUS	transcript	20423618	20425611	.	+	.	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	start_codon	20423618	20423620	.	+	0	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	CDS	20423618	20423969	0.47	+	0	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	exon	20423618	20423969	.	+	.	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	intron	20423970	20424097	.	+	.	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	CDS	20424098	20424450	0.77	+	2	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	exon	20424098	20424450	.	+	.	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	intron	20424451	20424535	.	+	.	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	CDS	20424536	20424616	1	+	0	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	exon	20424536	20424616	.	+	.	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	intron	20424617	20424694	.	+	.	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	CDS	20424695	20424732	0.68	+	0	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	exon	20424695	20424732	.	+	.	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	intron	20424733	20424923	.	+	.	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	CDS	20424924	20425611	0.47	+	1	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	exon	20424924	20425611	.	+	.	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
Ledus.S1	AUGUSTUS	stop_codon	20425612	20425614	.	+	0	transcript_id "Ledus.S1G228300.t1"; gene_id "Ledus.S1G228300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11847.t1 is derived from g5466.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7287811	7289027	.	+	.	Ledus.S4G100300
Ledus.S4	AUGUSTUS	transcript	7287811	7289027	.	+	.	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	start_codon	7287811	7287813	.	+	0	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	CDS	7287811	7288024	0.84	+	0	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	exon	7287811	7288024	.	+	.	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	intron	7288025	7288134	.	+	.	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	CDS	7288135	7288242	1	+	2	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	exon	7288135	7288242	.	+	.	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	intron	7288243	7288317	.	+	.	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	CDS	7288318	7288445	0.96	+	2	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	exon	7288318	7288445	.	+	.	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	intron	7288446	7288561	.	+	.	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	CDS	7288562	7288662	0.96	+	0	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	exon	7288562	7288662	.	+	.	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	intron	7288663	7288756	.	+	.	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	CDS	7288757	7288816	1	+	1	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	exon	7288757	7288816	.	+	.	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	intron	7288817	7288891	.	+	.	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	CDS	7288892	7289027	1	+	1	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	exon	7288892	7289027	.	+	.	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
Ledus.S4	AUGUSTUS	stop_codon	7289028	7289030	.	+	0	transcript_id "Ledus.S4G100300.t1"; gene_id "Ledus.S4G100300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7007.t1 is derived from g6538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	774597	776710	.	+	.	Ledus.C7G006800
Ledus.C7	AUGUSTUS	transcript	774597	776710	.	+	.	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	start_codon	774597	774599	.	+	0	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	CDS	774597	775934	0.42	+	0	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	exon	774597	775934	.	+	.	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	intron	775935	776067	.	+	.	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	CDS	776068	776133	0.53	+	0	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	exon	776068	776133	.	+	.	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	intron	776134	776361	.	+	.	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	CDS	776362	776372	0.81	+	0	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	exon	776362	776372	.	+	.	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	intron	776373	776451	.	+	.	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	CDS	776452	776479	0.9	+	1	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	exon	776452	776479	.	+	.	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	intron	776480	776674	.	+	.	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	CDS	776675	776710	0.95	+	0	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	exon	776675	776710	.	+	.	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
Ledus.C7	AUGUSTUS	stop_codon	776711	776713	.	+	0	transcript_id "Ledus.C7G006800.t1"; gene_id "Ledus.C7G006800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2471.t1 is derived from g9334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18356657	18358413	.	-	.	Ledus.S2G235300
Ledus.S2	AUGUSTUS	transcript	18356657	18358413	.	-	.	transcript_id "Ledus.S2G235300.t1"; gene_id "Ledus.S2G235300"
Ledus.S2	AUGUSTUS	stop_codon	18356654	18356656	.	-	0	transcript_id "Ledus.S2G235300.t1"; gene_id "Ledus.S2G235300"
Ledus.S2	AUGUSTUS	CDS	18356657	18356700	0.9	-	2	transcript_id "Ledus.S2G235300.t1"; gene_id "Ledus.S2G235300"
Ledus.S2	AUGUSTUS	exon	18356657	18356700	.	-	.	transcript_id "Ledus.S2G235300.t1"; gene_id "Ledus.S2G235300"
Ledus.S2	AUGUSTUS	intron	18356701	18357219	.	-	.	transcript_id "Ledus.S2G235300.t1"; gene_id "Ledus.S2G235300"
Ledus.S2	AUGUSTUS	CDS	18357220	18357275	0.77	-	1	transcript_id "Ledus.S2G235300.t1"; gene_id "Ledus.S2G235300"
Ledus.S2	AUGUSTUS	exon	18357220	18357275	.	-	.	transcript_id "Ledus.S2G235300.t1"; gene_id "Ledus.S2G235300"
Ledus.S2	AUGUSTUS	intron	18357276	18357361	.	-	.	transcript_id "Ledus.S2G235300.t1"; gene_id "Ledus.S2G235300"
Ledus.S2	AUGUSTUS	CDS	18357362	18358413	0.78	-	0	transcript_id "Ledus.S2G235300.t1"; gene_id "Ledus.S2G235300"
Ledus.S2	AUGUSTUS	exon	18357362	18358413	.	-	.	transcript_id "Ledus.S2G235300.t1"; gene_id "Ledus.S2G235300"
Ledus.S2	AUGUSTUS	start_codon	18358411	18358413	.	-	0	transcript_id "Ledus.S2G235300.t1"; gene_id "Ledus.S2G235300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11157.t1 is derived from g4775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2242343	2243120	.	-	.	Ledus.S4G031300
Ledus.S4	AUGUSTUS	transcript	2242343	2243120	.	-	.	transcript_id "Ledus.S4G031300.t1"; gene_id "Ledus.S4G031300"
Ledus.S4	AUGUSTUS	stop_codon	2242340	2242342	.	-	0	transcript_id "Ledus.S4G031300.t1"; gene_id "Ledus.S4G031300"
Ledus.S4	AUGUSTUS	CDS	2242343	2242470	0.97	-	2	transcript_id "Ledus.S4G031300.t1"; gene_id "Ledus.S4G031300"
Ledus.S4	AUGUSTUS	exon	2242343	2242470	.	-	.	transcript_id "Ledus.S4G031300.t1"; gene_id "Ledus.S4G031300"
Ledus.S4	AUGUSTUS	intron	2242471	2242771	.	-	.	transcript_id "Ledus.S4G031300.t1"; gene_id "Ledus.S4G031300"
Ledus.S4	AUGUSTUS	CDS	2242772	2242969	0.63	-	2	transcript_id "Ledus.S4G031300.t1"; gene_id "Ledus.S4G031300"
Ledus.S4	AUGUSTUS	exon	2242772	2242969	.	-	.	transcript_id "Ledus.S4G031300.t1"; gene_id "Ledus.S4G031300"
Ledus.S4	AUGUSTUS	intron	2242970	2243065	.	-	.	transcript_id "Ledus.S4G031300.t1"; gene_id "Ledus.S4G031300"
Ledus.S4	AUGUSTUS	CDS	2243066	2243120	0.5	-	0	transcript_id "Ledus.S4G031300.t1"; gene_id "Ledus.S4G031300"
Ledus.S4	AUGUSTUS	exon	2243066	2243120	.	-	.	transcript_id "Ledus.S4G031300.t1"; gene_id "Ledus.S4G031300"
Ledus.S4	AUGUSTUS	start_codon	2243118	2243120	.	-	0	transcript_id "Ledus.S4G031300.t1"; gene_id "Ledus.S4G031300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2458.t1 is derived from g9321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18257452	18263571	.	+	.	Ledus.S2G234000
Ledus.S2	AUGUSTUS	transcript	18257452	18263571	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	start_codon	18257452	18257454	.	+	0	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18257452	18257673	1	+	0	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18257452	18257673	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18257674	18257791	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18257792	18257871	1	+	0	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18257792	18257871	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18257872	18257971	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18257972	18258022	1	+	1	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18257972	18258022	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18258023	18258239	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18258240	18258794	1	+	1	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18258240	18258794	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18258795	18258923	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18258924	18259190	0.99	+	1	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18258924	18259190	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18259191	18259427	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18259428	18259517	1	+	1	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18259428	18259517	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18259518	18259598	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18259599	18259784	0.9	+	1	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18259599	18259784	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18259785	18259886	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18259887	18259938	0.78	+	1	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18259887	18259938	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18259939	18260042	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18260043	18260375	0.97	+	0	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18260043	18260375	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18260376	18260536	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18260537	18260647	0.95	+	0	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18260537	18260647	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18260648	18260767	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18260768	18260959	1	+	0	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18260768	18260959	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18260960	18261130	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18261131	18261409	1	+	0	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18261131	18261409	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18261410	18261537	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18261538	18262164	0.94	+	0	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18261538	18262164	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18262165	18262325	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18262326	18262834	0.99	+	0	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18262326	18262834	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18262835	18262992	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18262993	18263053	1	+	1	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18262993	18263053	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18263054	18263233	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18263234	18263302	1	+	0	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18263234	18263302	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	intron	18263303	18263457	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	CDS	18263458	18263571	0.6	+	0	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	exon	18263458	18263571	.	+	.	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
Ledus.S2	AUGUSTUS	stop_codon	18263572	18263574	.	+	0	transcript_id "Ledus.S2G234000.t1"; gene_id "Ledus.S2G234000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8279.t1 is derived from g12950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10399754	10400700	.	-	.	Ledus.S5G105700
Ledus.S5	AUGUSTUS	transcript	10399754	10400700	.	-	.	transcript_id "Ledus.S5G105700.t1"; gene_id "Ledus.S5G105700"
Ledus.S5	AUGUSTUS	stop_codon	10399751	10399753	.	-	0	transcript_id "Ledus.S5G105700.t1"; gene_id "Ledus.S5G105700"
Ledus.S5	AUGUSTUS	CDS	10399754	10400380	1	-	0	transcript_id "Ledus.S5G105700.t1"; gene_id "Ledus.S5G105700"
Ledus.S5	AUGUSTUS	exon	10399754	10400380	.	-	.	transcript_id "Ledus.S5G105700.t1"; gene_id "Ledus.S5G105700"
Ledus.S5	AUGUSTUS	intron	10400381	10400458	.	-	.	transcript_id "Ledus.S5G105700.t1"; gene_id "Ledus.S5G105700"
Ledus.S5	AUGUSTUS	CDS	10400459	10400540	1	-	1	transcript_id "Ledus.S5G105700.t1"; gene_id "Ledus.S5G105700"
Ledus.S5	AUGUSTUS	exon	10400459	10400540	.	-	.	transcript_id "Ledus.S5G105700.t1"; gene_id "Ledus.S5G105700"
Ledus.S5	AUGUSTUS	intron	10400541	10400632	.	-	.	transcript_id "Ledus.S5G105700.t1"; gene_id "Ledus.S5G105700"
Ledus.S5	AUGUSTUS	CDS	10400633	10400700	0.99	-	0	transcript_id "Ledus.S5G105700.t1"; gene_id "Ledus.S5G105700"
Ledus.S5	AUGUSTUS	exon	10400633	10400700	.	-	.	transcript_id "Ledus.S5G105700.t1"; gene_id "Ledus.S5G105700"
Ledus.S5	AUGUSTUS	start_codon	10400698	10400700	.	-	0	transcript_id "Ledus.S5G105700.t1"; gene_id "Ledus.S5G105700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7185.t1 is derived from g6716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2032347	2033625	.	-	.	Ledus.C7G024600
Ledus.C7	AUGUSTUS	transcript	2032347	2033625	.	-	.	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	stop_codon	2032344	2032346	.	-	0	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	CDS	2032347	2032617	0.98	-	1	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	exon	2032347	2032617	.	-	.	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	intron	2032618	2032710	.	-	.	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	CDS	2032711	2032950	1	-	1	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	exon	2032711	2032950	.	-	.	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	intron	2032951	2033039	.	-	.	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	CDS	2033040	2033386	1	-	0	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	exon	2033040	2033386	.	-	.	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	intron	2033387	2033553	.	-	.	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	CDS	2033554	2033625	0.82	-	0	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	exon	2033554	2033625	.	-	.	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
Ledus.C7	AUGUSTUS	start_codon	2033623	2033625	.	-	0	transcript_id "Ledus.C7G024600.t1"; gene_id "Ledus.C7G024600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11912.t1 is derived from g5531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7720263	7721263	.	+	.	Ledus.S4G106800
Ledus.S4	AUGUSTUS	transcript	7720263	7721263	.	+	.	transcript_id "Ledus.S4G106800.t1"; gene_id "Ledus.S4G106800"
Ledus.S4	AUGUSTUS	start_codon	7720263	7720265	.	+	0	transcript_id "Ledus.S4G106800.t1"; gene_id "Ledus.S4G106800"
Ledus.S4	AUGUSTUS	CDS	7720263	7720371	0.59	+	0	transcript_id "Ledus.S4G106800.t1"; gene_id "Ledus.S4G106800"
Ledus.S4	AUGUSTUS	exon	7720263	7720371	.	+	.	transcript_id "Ledus.S4G106800.t1"; gene_id "Ledus.S4G106800"
Ledus.S4	AUGUSTUS	intron	7720372	7720798	.	+	.	transcript_id "Ledus.S4G106800.t1"; gene_id "Ledus.S4G106800"
Ledus.S4	AUGUSTUS	CDS	7720799	7720883	0.8	+	2	transcript_id "Ledus.S4G106800.t1"; gene_id "Ledus.S4G106800"
Ledus.S4	AUGUSTUS	exon	7720799	7720883	.	+	.	transcript_id "Ledus.S4G106800.t1"; gene_id "Ledus.S4G106800"
Ledus.S4	AUGUSTUS	intron	7720884	7721238	.	+	.	transcript_id "Ledus.S4G106800.t1"; gene_id "Ledus.S4G106800"
Ledus.S4	AUGUSTUS	CDS	7721239	7721263	0.99	+	1	transcript_id "Ledus.S4G106800.t1"; gene_id "Ledus.S4G106800"
Ledus.S4	AUGUSTUS	exon	7721239	7721263	.	+	.	transcript_id "Ledus.S4G106800.t1"; gene_id "Ledus.S4G106800"
Ledus.S4	AUGUSTUS	stop_codon	7721264	7721266	.	+	0	transcript_id "Ledus.S4G106800.t1"; gene_id "Ledus.S4G106800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9974.t1 is derived from g11004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11647010	11648382	.	-	.	Ledus.S3G145100
Ledus.S3	AUGUSTUS	transcript	11647010	11648382	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	stop_codon	11647007	11647009	.	-	0	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	CDS	11647010	11647027	0.97	-	0	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	exon	11647010	11647027	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	intron	11647028	11647189	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	CDS	11647190	11647267	1	-	0	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	exon	11647190	11647267	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	intron	11647268	11647479	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	CDS	11647480	11647577	0.99	-	2	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	exon	11647480	11647577	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	intron	11647578	11647661	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	CDS	11647662	11647730	0.56	-	2	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	exon	11647662	11647730	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	intron	11647731	11647794	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	CDS	11647795	11647799	0.74	-	1	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	exon	11647795	11647799	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	intron	11647800	11647963	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	CDS	11647964	11648038	0.95	-	1	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	exon	11647964	11648038	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	intron	11648039	11648248	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	CDS	11648249	11648382	0.44	-	0	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	exon	11648249	11648382	.	-	.	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
Ledus.S3	AUGUSTUS	start_codon	11648380	11648382	.	-	0	transcript_id "Ledus.S3G145100.t1"; gene_id "Ledus.S3G145100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11463.t1 is derived from g5081.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4473150	4473902	.	+	.	Ledus.S4G061900
Ledus.S4	AUGUSTUS	transcript	4473150	4473902	.	+	.	transcript_id "Ledus.S4G061900.t1"; gene_id "Ledus.S4G061900"
Ledus.S4	AUGUSTUS	start_codon	4473150	4473152	.	+	0	transcript_id "Ledus.S4G061900.t1"; gene_id "Ledus.S4G061900"
Ledus.S4	AUGUSTUS	CDS	4473150	4473902	0.78	+	0	transcript_id "Ledus.S4G061900.t1"; gene_id "Ledus.S4G061900"
Ledus.S4	AUGUSTUS	exon	4473150	4473902	.	+	.	transcript_id "Ledus.S4G061900.t1"; gene_id "Ledus.S4G061900"
Ledus.S4	AUGUSTUS	stop_codon	4473903	4473905	.	+	0	transcript_id "Ledus.S4G061900.t1"; gene_id "Ledus.S4G061900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6025.t1 is derived from g3468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28479359	28480042	.	-	.	Ledus.S1G344600
Ledus.S1	AUGUSTUS	transcript	28479359	28480042	.	-	.	transcript_id "Ledus.S1G344600.t1"; gene_id "Ledus.S1G344600"
Ledus.S1	AUGUSTUS	stop_codon	28479356	28479358	.	-	0	transcript_id "Ledus.S1G344600.t1"; gene_id "Ledus.S1G344600"
Ledus.S1	AUGUSTUS	CDS	28479359	28480042	1	-	0	transcript_id "Ledus.S1G344600.t1"; gene_id "Ledus.S1G344600"
Ledus.S1	AUGUSTUS	exon	28479359	28480042	.	-	.	transcript_id "Ledus.S1G344600.t1"; gene_id "Ledus.S1G344600"
Ledus.S1	AUGUSTUS	start_codon	28480040	28480042	.	-	0	transcript_id "Ledus.S1G344600.t1"; gene_id "Ledus.S1G344600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7485.t1 is derived from g12156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3326990	3327544	.	-	.	Ledus.S5G026300
Ledus.S5	AUGUSTUS	transcript	3326990	3327544	.	-	.	transcript_id "Ledus.S5G026300.t1"; gene_id "Ledus.S5G026300"
Ledus.S5	AUGUSTUS	stop_codon	3326987	3326989	.	-	0	transcript_id "Ledus.S5G026300.t1"; gene_id "Ledus.S5G026300"
Ledus.S5	AUGUSTUS	CDS	3326990	3327544	0.86	-	0	transcript_id "Ledus.S5G026300.t1"; gene_id "Ledus.S5G026300"
Ledus.S5	AUGUSTUS	exon	3326990	3327544	.	-	.	transcript_id "Ledus.S5G026300.t1"; gene_id "Ledus.S5G026300"
Ledus.S5	AUGUSTUS	start_codon	3327542	3327544	.	-	0	transcript_id "Ledus.S5G026300.t1"; gene_id "Ledus.S5G026300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9713.t1 is derived from g10743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9240630	9241020	.	-	.	Ledus.S3G119000
Ledus.S3	AUGUSTUS	transcript	9240630	9241020	.	-	.	transcript_id "Ledus.S3G119000.t1"; gene_id "Ledus.S3G119000"
Ledus.S3	AUGUSTUS	stop_codon	9240627	9240629	.	-	0	transcript_id "Ledus.S3G119000.t1"; gene_id "Ledus.S3G119000"
Ledus.S3	AUGUSTUS	CDS	9240630	9240716	0.69	-	0	transcript_id "Ledus.S3G119000.t1"; gene_id "Ledus.S3G119000"
Ledus.S3	AUGUSTUS	exon	9240630	9240716	.	-	.	transcript_id "Ledus.S3G119000.t1"; gene_id "Ledus.S3G119000"
Ledus.S3	AUGUSTUS	intron	9240717	9240819	.	-	.	transcript_id "Ledus.S3G119000.t1"; gene_id "Ledus.S3G119000"
Ledus.S3	AUGUSTUS	CDS	9240820	9241020	0.16	-	0	transcript_id "Ledus.S3G119000.t1"; gene_id "Ledus.S3G119000"
Ledus.S3	AUGUSTUS	exon	9240820	9241020	.	-	.	transcript_id "Ledus.S3G119000.t1"; gene_id "Ledus.S3G119000"
Ledus.S3	AUGUSTUS	start_codon	9241018	9241020	.	-	0	transcript_id "Ledus.S3G119000.t1"; gene_id "Ledus.S3G119000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8649.t1 is derived from g9679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1081047	1081478	.	-	.	Ledus.S3G012600
Ledus.S3	AUGUSTUS	transcript	1081047	1081478	.	-	.	transcript_id "Ledus.S3G012600.t1"; gene_id "Ledus.S3G012600"
Ledus.S3	AUGUSTUS	stop_codon	1081044	1081046	.	-	0	transcript_id "Ledus.S3G012600.t1"; gene_id "Ledus.S3G012600"
Ledus.S3	AUGUSTUS	CDS	1081047	1081478	0.84	-	0	transcript_id "Ledus.S3G012600.t1"; gene_id "Ledus.S3G012600"
Ledus.S3	AUGUSTUS	exon	1081047	1081478	.	-	.	transcript_id "Ledus.S3G012600.t1"; gene_id "Ledus.S3G012600"
Ledus.S3	AUGUSTUS	start_codon	1081476	1081478	.	-	0	transcript_id "Ledus.S3G012600.t1"; gene_id "Ledus.S3G012600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8247.t1 is derived from g12918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10148181	10149638	.	-	.	Ledus.S5G102500
Ledus.S5	AUGUSTUS	transcript	10148181	10149638	.	-	.	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	stop_codon	10148178	10148180	.	-	0	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	CDS	10148181	10148357	1	-	0	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	exon	10148181	10148357	.	-	.	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	intron	10148358	10148441	.	-	.	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	CDS	10148442	10148571	1	-	1	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	exon	10148442	10148571	.	-	.	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	intron	10148572	10148675	.	-	.	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	CDS	10148676	10148779	1	-	0	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	exon	10148676	10148779	.	-	.	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	intron	10148780	10148898	.	-	.	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	CDS	10148899	10149108	1	-	0	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	exon	10148899	10149108	.	-	.	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	intron	10149109	10149234	.	-	.	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	CDS	10149235	10149338	0.81	-	2	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	exon	10149235	10149338	.	-	.	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	intron	10149339	10149409	.	-	.	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	CDS	10149410	10149638	0.93	-	0	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	exon	10149410	10149638	.	-	.	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
Ledus.S5	AUGUSTUS	start_codon	10149636	10149638	.	-	0	transcript_id "Ledus.S5G102500.t1"; gene_id "Ledus.S5G102500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9910.t1 is derived from g10940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11117603	11118478	.	+	.	Ledus.S3G138700
Ledus.S3	AUGUSTUS	transcript	11117603	11118478	.	+	.	transcript_id "Ledus.S3G138700.t1"; gene_id "Ledus.S3G138700"
Ledus.S3	AUGUSTUS	start_codon	11117603	11117605	.	+	0	transcript_id "Ledus.S3G138700.t1"; gene_id "Ledus.S3G138700"
Ledus.S3	AUGUSTUS	CDS	11117603	11118478	1	+	0	transcript_id "Ledus.S3G138700.t1"; gene_id "Ledus.S3G138700"
Ledus.S3	AUGUSTUS	exon	11117603	11118478	.	+	.	transcript_id "Ledus.S3G138700.t1"; gene_id "Ledus.S3G138700"
Ledus.S3	AUGUSTUS	stop_codon	11118479	11118481	.	+	0	transcript_id "Ledus.S3G138700.t1"; gene_id "Ledus.S3G138700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2879.t1 is derived from g314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4358170	4364825	.	+	.	Ledus.S1G030000
Ledus.S1	AUGUSTUS	transcript	4358170	4364825	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	start_codon	4358170	4358172	.	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4358170	4358535	0.5	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4358170	4358535	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4358536	4358664	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4358665	4359452	0.78	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4358665	4359452	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4359453	4359539	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4359540	4359591	1	+	1	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4359540	4359591	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4359592	4359746	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4359747	4359821	1	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4359747	4359821	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4359822	4359913	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4359914	4360172	1	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4359914	4360172	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4360173	4360263	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4360264	4360384	1	+	2	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4360264	4360384	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4360385	4360494	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4360495	4360599	0.99	+	1	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4360495	4360599	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4360600	4360708	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4360709	4360908	1	+	1	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4360709	4360908	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4360909	4360998	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4360999	4361091	1	+	2	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4360999	4361091	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4361092	4361176	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4361177	4361274	0.59	+	2	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4361177	4361274	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4361275	4361391	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4361392	4361553	0.88	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4361392	4361553	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4361554	4361711	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4361712	4361861	0.95	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4361712	4361861	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4361862	4362149	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4362150	4362267	0.99	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4362150	4362267	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4362268	4362426	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4362427	4362492	1	+	2	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4362427	4362492	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4362493	4362577	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4362578	4362639	1	+	2	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4362578	4362639	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4362640	4362741	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4362742	4362798	1	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4362742	4362798	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4362799	4362990	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4362991	4363059	1	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4362991	4363059	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4363060	4363162	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4363163	4363319	0.58	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4363163	4363319	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4363320	4363442	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4363443	4363754	0.78	+	2	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4363443	4363754	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4363755	4363881	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4363882	4363943	0.66	+	2	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4363882	4363943	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4363944	4364052	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4364053	4364130	0.99	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4364053	4364130	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4364131	4364303	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4364304	4364399	1	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4364304	4364399	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4364400	4364498	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4364499	4364602	1	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4364499	4364602	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	intron	4364603	4364677	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	CDS	4364678	4364825	1	+	1	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	exon	4364678	4364825	.	+	.	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
Ledus.S1	AUGUSTUS	stop_codon	4364826	4364828	.	+	0	transcript_id "Ledus.S1G030000.t1"; gene_id "Ledus.S1G030000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3932.t1 is derived from g1368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13611509	13612168	.	-	.	Ledus.S1G135300
Ledus.S1	AUGUSTUS	transcript	13611509	13612168	.	-	.	transcript_id "Ledus.S1G135300.t1"; gene_id "Ledus.S1G135300"
Ledus.S1	AUGUSTUS	stop_codon	13611506	13611508	.	-	0	transcript_id "Ledus.S1G135300.t1"; gene_id "Ledus.S1G135300"
Ledus.S1	AUGUSTUS	CDS	13611509	13612168	0.94	-	0	transcript_id "Ledus.S1G135300.t1"; gene_id "Ledus.S1G135300"
Ledus.S1	AUGUSTUS	exon	13611509	13612168	.	-	.	transcript_id "Ledus.S1G135300.t1"; gene_id "Ledus.S1G135300"
Ledus.S1	AUGUSTUS	start_codon	13612166	13612168	.	-	0	transcript_id "Ledus.S1G135300.t1"; gene_id "Ledus.S1G135300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1937.t1 is derived from g8800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13593188	13595545	.	-	.	Ledus.S2G181900
Ledus.S2	AUGUSTUS	transcript	13593188	13594342	.	-	.	transcript_id "Ledus.S2G181900.t1"; gene_id "Ledus.S2G181900"
Ledus.S2	AUGUSTUS	stop_codon	13593185	13593187	.	-	0	transcript_id "Ledus.S2G181900.t1"; gene_id "Ledus.S2G181900"
Ledus.S2	AUGUSTUS	CDS	13593188	13594342	1	-	0	transcript_id "Ledus.S2G181900.t1"; gene_id "Ledus.S2G181900"
Ledus.S2	AUGUSTUS	exon	13593188	13594342	.	-	.	transcript_id "Ledus.S2G181900.t1"; gene_id "Ledus.S2G181900"
Ledus.S2	AUGUSTUS	start_codon	13594340	13594342	.	-	0	transcript_id "Ledus.S2G181900.t1"; gene_id "Ledus.S2G181900"
Ledus.S2	AUGUSTUS	transcript	13593188	13595545	.	-	.	transcript_id "Ledus.S2G181900.t2"; gene_id "Ledus.S2G181900"
Ledus.S2	AUGUSTUS	stop_codon	13593185	13593187	.	-	0	transcript_id "Ledus.S2G181900.t2"; gene_id "Ledus.S2G181900"
Ledus.S2	AUGUSTUS	CDS	13593188	13595545	0.31	-	0	transcript_id "Ledus.S2G181900.t2"; gene_id "Ledus.S2G181900"
Ledus.S2	AUGUSTUS	exon	13593188	13595545	.	-	.	transcript_id "Ledus.S2G181900.t2"; gene_id "Ledus.S2G181900"
Ledus.S2	AUGUSTUS	start_codon	13595543	13595545	.	-	0	transcript_id "Ledus.S2G181900.t2"; gene_id "Ledus.S2G181900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7672.t1 is derived from g12343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5113992	5122981	.	+	.	Ledus.S5G045000
Ledus.S5	AUGUSTUS	transcript	5113992	5122981	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	start_codon	5113992	5113994	.	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5113992	5114365	0.7	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5113992	5114365	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5114366	5114499	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5114500	5114660	1	+	1	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5114500	5114660	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5114661	5114797	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5114798	5115037	1	+	2	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5114798	5115037	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5115038	5115129	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5115130	5115239	1	+	2	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5115130	5115239	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5115240	5115421	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5115422	5115499	1	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5115422	5115499	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5115500	5115655	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5115656	5115762	1	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5115656	5115762	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5115763	5115874	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5115875	5115960	1	+	1	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5115875	5115960	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5115961	5116062	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5116063	5116181	1	+	2	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5116063	5116181	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5116182	5116324	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5116325	5116428	1	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5116325	5116428	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5116429	5116647	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5116648	5116725	1	+	1	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5116648	5116725	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5116726	5116819	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5116820	5116895	1	+	1	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5116820	5116895	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5116896	5116994	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5116995	5117184	1	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5116995	5117184	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5117185	5117355	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5117356	5117426	1	+	2	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5117356	5117426	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5117427	5117608	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5117609	5117689	1	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5117609	5117689	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5117690	5117907	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5117908	5117978	1	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5117908	5117978	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5117979	5118188	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5118189	5118288	1	+	1	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5118189	5118288	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5118289	5118389	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5118390	5118449	1	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5118390	5118449	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5118450	5118587	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5118588	5118642	1	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5118588	5118642	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5118643	5118757	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5118758	5119161	0.98	+	2	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5118758	5119161	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5119162	5119263	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5119264	5121594	0.95	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5119264	5121594	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5121595	5121793	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5121794	5122360	1	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5121794	5122360	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5122361	5122497	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5122498	5122556	1	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5122498	5122556	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5122557	5122678	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5122679	5122834	0.8	+	1	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5122679	5122834	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	intron	5122835	5122917	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	CDS	5122918	5122981	0.64	+	1	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	exon	5122918	5122981	.	+	.	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
Ledus.S5	AUGUSTUS	stop_codon	5122982	5122984	.	+	0	transcript_id "Ledus.S5G045000.t1"; gene_id "Ledus.S5G045000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7527.t1 is derived from g12198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3605250	3607879	.	-	.	Ledus.S5G030500
Ledus.S5	AUGUSTUS	transcript	3605250	3607879	.	-	.	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	stop_codon	3605247	3605249	.	-	0	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	CDS	3605250	3605597	1	-	0	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	exon	3605250	3605597	.	-	.	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	intron	3605598	3605707	.	-	.	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	CDS	3605708	3605833	1	-	0	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	exon	3605708	3605833	.	-	.	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	intron	3605834	3605979	.	-	.	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	CDS	3605980	3606070	1	-	1	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	exon	3605980	3606070	.	-	.	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	intron	3606071	3606218	.	-	.	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	CDS	3606219	3606295	1	-	0	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	exon	3606219	3606295	.	-	.	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	intron	3606296	3606481	.	-	.	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	CDS	3606482	3607879	0.97	-	0	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	exon	3606482	3607879	.	-	.	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
Ledus.S5	AUGUSTUS	start_codon	3607877	3607879	.	-	0	transcript_id "Ledus.S5G030500.t1"; gene_id "Ledus.S5G030500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3207.t1 is derived from g642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6829104	6830187	.	-	.	Ledus.S1G062800
Ledus.S1	AUGUSTUS	transcript	6829104	6830187	.	-	.	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	stop_codon	6829101	6829103	.	-	0	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	CDS	6829104	6829107	0.99	-	1	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	exon	6829104	6829107	.	-	.	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	intron	6829108	6829193	.	-	.	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	CDS	6829194	6829252	0.99	-	0	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	exon	6829194	6829252	.	-	.	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	intron	6829253	6829472	.	-	.	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	CDS	6829473	6829574	0.99	-	0	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	exon	6829473	6829574	.	-	.	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	intron	6829575	6829760	.	-	.	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	CDS	6829761	6829840	0.98	-	2	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	exon	6829761	6829840	.	-	.	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	intron	6829841	6829981	.	-	.	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	CDS	6829982	6830097	0.94	-	1	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	exon	6829982	6830097	.	-	.	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	intron	6830098	6830173	.	-	.	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	CDS	6830174	6830187	0.81	-	0	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	exon	6830174	6830187	.	-	.	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
Ledus.S1	AUGUSTUS	start_codon	6830185	6830187	.	-	0	transcript_id "Ledus.S1G062800.t1"; gene_id "Ledus.S1G062800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8438.t1 is derived from g13110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11694635	11695450	.	-	.	Ledus.S5G121600
Ledus.S5	AUGUSTUS	transcript	11694635	11695450	.	-	.	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	stop_codon	11694632	11694634	.	-	0	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	CDS	11694635	11694660	0.92	-	2	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	exon	11694635	11694660	.	-	.	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	intron	11694661	11694824	.	-	.	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	CDS	11694825	11694849	0.92	-	0	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	exon	11694825	11694849	.	-	.	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	intron	11694850	11694965	.	-	.	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	CDS	11694966	11695138	0.84	-	2	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	exon	11694966	11695138	.	-	.	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	intron	11695139	11695233	.	-	.	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	CDS	11695234	11695450	0.74	-	0	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	exon	11695234	11695450	.	-	.	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
Ledus.S5	AUGUSTUS	start_codon	11695448	11695450	.	-	0	transcript_id "Ledus.S5G121600.t1"; gene_id "Ledus.S5G121600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg937.t1 is derived from g7798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6236786	6238042	.	-	.	Ledus.S2G081900
Ledus.S2	AUGUSTUS	transcript	6236786	6238042	.	-	.	transcript_id "Ledus.S2G081900.t1"; gene_id "Ledus.S2G081900"
Ledus.S2	AUGUSTUS	stop_codon	6236783	6236785	.	-	0	transcript_id "Ledus.S2G081900.t1"; gene_id "Ledus.S2G081900"
Ledus.S2	AUGUSTUS	CDS	6236786	6238042	0.98	-	0	transcript_id "Ledus.S2G081900.t1"; gene_id "Ledus.S2G081900"
Ledus.S2	AUGUSTUS	exon	6236786	6238042	.	-	.	transcript_id "Ledus.S2G081900.t1"; gene_id "Ledus.S2G081900"
Ledus.S2	AUGUSTUS	start_codon	6238040	6238042	.	-	0	transcript_id "Ledus.S2G081900.t1"; gene_id "Ledus.S2G081900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9350.t1 is derived from g10380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6304342	6308929	.	+	.	Ledus.S3G082700
Ledus.S3	AUGUSTUS	transcript	6304342	6308929	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	start_codon	6304342	6304344	.	+	0	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6304342	6304402	0.55	+	0	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6304342	6304402	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6304403	6304478	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6304479	6304579	0.57	+	2	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6304479	6304579	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6304580	6304990	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6304991	6305122	0.73	+	0	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6304991	6305122	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6305123	6305224	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6305225	6305462	0.81	+	0	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6305225	6305462	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6305463	6305601	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6305602	6305671	1	+	2	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6305602	6305671	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6305672	6305882	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6305883	6306149	1	+	1	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6305883	6306149	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6306150	6306323	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6306324	6307230	0.99	+	1	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6306324	6307230	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6307231	6307325	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6307326	6307442	1	+	0	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6307326	6307442	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6307443	6307529	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6307530	6307592	1	+	0	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6307530	6307592	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6307593	6307793	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6307794	6307901	1	+	0	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6307794	6307901	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6307902	6308055	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6308056	6308157	0.99	+	0	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6308056	6308157	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6308158	6308265	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6308266	6308333	0.99	+	0	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6308266	6308333	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6308334	6308433	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6308434	6308515	1	+	1	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6308434	6308515	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6308516	6308633	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6308634	6308750	1	+	0	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6308634	6308750	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	intron	6308751	6308839	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	CDS	6308840	6308929	0.98	+	0	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	exon	6308840	6308929	.	+	.	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
Ledus.S3	AUGUSTUS	stop_codon	6308930	6308932	.	+	0	transcript_id "Ledus.S3G082700.t1"; gene_id "Ledus.S3G082700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg811.t1 is derived from g7672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5248882	5250391	.	+	.	Ledus.S2G069300
Ledus.S2	AUGUSTUS	transcript	5248882	5250391	.	+	.	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	start_codon	5248882	5248884	.	+	0	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	CDS	5248882	5248970	0.96	+	0	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	exon	5248882	5248970	.	+	.	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	intron	5248971	5249049	.	+	.	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	CDS	5249050	5249683	1	+	1	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	exon	5249050	5249683	.	+	.	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	intron	5249684	5249776	.	+	.	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	CDS	5249777	5249880	1	+	0	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	exon	5249777	5249880	.	+	.	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	intron	5249881	5249959	.	+	.	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	CDS	5249960	5250092	1	+	1	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	exon	5249960	5250092	.	+	.	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	intron	5250093	5250187	.	+	.	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	CDS	5250188	5250391	1	+	0	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	exon	5250188	5250391	.	+	.	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
Ledus.S2	AUGUSTUS	stop_codon	5250392	5250394	.	+	0	transcript_id "Ledus.S2G069300.t1"; gene_id "Ledus.S2G069300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2597.t1 is derived from g30.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	197134	199726	.	+	.	Ledus.S1G001800
Ledus.S1	AUGUSTUS	transcript	197134	199726	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	start_codon	197134	197136	.	+	0	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	CDS	197134	197157	0.97	+	0	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	exon	197134	197157	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	intron	197158	197255	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	CDS	197256	197484	1	+	0	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	exon	197256	197484	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	intron	197485	197590	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	CDS	197591	197808	0.99	+	2	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	exon	197591	197808	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	intron	197809	197899	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	CDS	197900	198138	1	+	0	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	exon	197900	198138	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	intron	198139	198237	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	CDS	198238	198564	1	+	1	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	exon	198238	198564	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	intron	198565	198643	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	CDS	198644	198827	1	+	1	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	exon	198644	198827	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	intron	198828	198907	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	CDS	198908	199341	1	+	0	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	exon	198908	199341	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	intron	199342	199428	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	CDS	199429	199726	1	+	1	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	exon	199429	199726	.	+	.	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
Ledus.S1	AUGUSTUS	stop_codon	199727	199729	.	+	0	transcript_id "Ledus.S1G001800.t1"; gene_id "Ledus.S1G001800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10145.t1 is derived from g11175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13143622	13144955	.	+	.	Ledus.S3G162200
Ledus.S3	AUGUSTUS	transcript	13143622	13144955	.	+	.	transcript_id "Ledus.S3G162200.t1"; gene_id "Ledus.S3G162200"
Ledus.S3	AUGUSTUS	start_codon	13143622	13143624	.	+	0	transcript_id "Ledus.S3G162200.t1"; gene_id "Ledus.S3G162200"
Ledus.S3	AUGUSTUS	CDS	13143622	13143813	0.87	+	0	transcript_id "Ledus.S3G162200.t1"; gene_id "Ledus.S3G162200"
Ledus.S3	AUGUSTUS	exon	13143622	13143813	.	+	.	transcript_id "Ledus.S3G162200.t1"; gene_id "Ledus.S3G162200"
Ledus.S3	AUGUSTUS	intron	13143814	13144287	.	+	.	transcript_id "Ledus.S3G162200.t1"; gene_id "Ledus.S3G162200"
Ledus.S3	AUGUSTUS	CDS	13144288	13144503	0.81	+	0	transcript_id "Ledus.S3G162200.t1"; gene_id "Ledus.S3G162200"
Ledus.S3	AUGUSTUS	exon	13144288	13144503	.	+	.	transcript_id "Ledus.S3G162200.t1"; gene_id "Ledus.S3G162200"
Ledus.S3	AUGUSTUS	intron	13144504	13144628	.	+	.	transcript_id "Ledus.S3G162200.t1"; gene_id "Ledus.S3G162200"
Ledus.S3	AUGUSTUS	CDS	13144629	13144955	0.52	+	0	transcript_id "Ledus.S3G162200.t1"; gene_id "Ledus.S3G162200"
Ledus.S3	AUGUSTUS	exon	13144629	13144955	.	+	.	transcript_id "Ledus.S3G162200.t1"; gene_id "Ledus.S3G162200"
Ledus.S3	AUGUSTUS	stop_codon	13144956	13144958	.	+	0	transcript_id "Ledus.S3G162200.t1"; gene_id "Ledus.S3G162200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4530.t1 is derived from g1967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17561273	17562109	.	+	.	Ledus.S1G195100
Ledus.S1	AUGUSTUS	transcript	17561273	17562109	.	+	.	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	start_codon	17561273	17561275	.	+	0	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	CDS	17561273	17561296	1	+	0	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	exon	17561273	17561296	.	+	.	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	intron	17561297	17561394	.	+	.	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	CDS	17561395	17561460	1	+	0	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	exon	17561395	17561460	.	+	.	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	intron	17561461	17561748	.	+	.	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	CDS	17561749	17561796	1	+	0	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	exon	17561749	17561796	.	+	.	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	intron	17561797	17561949	.	+	.	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	CDS	17561950	17561999	1	+	0	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	exon	17561950	17561999	.	+	.	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	intron	17562000	17562093	.	+	.	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	CDS	17562094	17562109	1	+	1	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	exon	17562094	17562109	.	+	.	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
Ledus.S1	AUGUSTUS	stop_codon	17562110	17562112	.	+	0	transcript_id "Ledus.S1G195100.t1"; gene_id "Ledus.S1G195100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5856.t1 is derived from g3298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27338267	27341129	.	+	.	Ledus.S1G327700
Ledus.S1	AUGUSTUS	transcript	27338267	27341129	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	start_codon	27338267	27338269	.	+	0	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	CDS	27338267	27338344	0.97	+	0	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	exon	27338267	27338344	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	intron	27338345	27338451	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	CDS	27338452	27338493	0.99	+	0	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	exon	27338452	27338493	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	intron	27338494	27338653	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	CDS	27338654	27338833	1	+	0	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	exon	27338654	27338833	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	intron	27338834	27339015	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	CDS	27339016	27339180	1	+	0	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	exon	27339016	27339180	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	intron	27339181	27339304	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	CDS	27339305	27339505	1	+	0	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	exon	27339305	27339505	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	intron	27339506	27339695	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	CDS	27339696	27339992	0.61	+	0	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	exon	27339696	27339992	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	intron	27339993	27340096	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	CDS	27340097	27340297	0.95	+	0	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	exon	27340097	27340297	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	intron	27340298	27340400	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	CDS	27340401	27340535	1	+	0	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	exon	27340401	27340535	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	intron	27340536	27340637	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	CDS	27340638	27340877	1	+	0	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	exon	27340638	27340877	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	intron	27340878	27340979	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	CDS	27340980	27341129	0.9	+	0	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	exon	27340980	27341129	.	+	.	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
Ledus.S1	AUGUSTUS	stop_codon	27341130	27341132	.	+	0	transcript_id "Ledus.S1G327700.t1"; gene_id "Ledus.S1G327700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6370.t1 is derived from g3813.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30801128	30802183	.	+	.	Ledus.S1G379100
Ledus.S1	AUGUSTUS	transcript	30801128	30802183	.	+	.	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	start_codon	30801128	30801130	.	+	0	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	CDS	30801128	30801142	0.36	+	0	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	exon	30801128	30801142	.	+	.	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	intron	30801143	30801275	.	+	.	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	CDS	30801276	30801418	0.32	+	0	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	exon	30801276	30801418	.	+	.	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	intron	30801419	30801510	.	+	.	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	CDS	30801511	30801797	0.43	+	1	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	exon	30801511	30801797	.	+	.	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	intron	30801798	30801881	.	+	.	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	CDS	30801882	30802183	0.37	+	2	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	exon	30801882	30802183	.	+	.	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	stop_codon	30802184	30802186	.	+	0	transcript_id "Ledus.S1G379100.t1"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	transcript	30801128	30802183	.	+	.	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	start_codon	30801128	30801130	.	+	0	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	CDS	30801128	30801142	0.35	+	0	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	exon	30801128	30801142	.	+	.	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	intron	30801143	30801275	.	+	.	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	CDS	30801276	30801418	0.27	+	0	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	exon	30801276	30801418	.	+	.	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	intron	30801419	30801501	.	+	.	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	CDS	30801502	30801797	0.41	+	1	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	exon	30801502	30801797	.	+	.	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	intron	30801798	30801881	.	+	.	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	CDS	30801882	30802183	0.35	+	2	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	exon	30801882	30802183	.	+	.	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
Ledus.S1	AUGUSTUS	stop_codon	30802184	30802186	.	+	0	transcript_id "Ledus.S1G379100.t2"; gene_id "Ledus.S1G379100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12401.t1 is derived from g6022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11666607	11669221	.	-	.	Ledus.S4G155700
Ledus.S4	AUGUSTUS	transcript	11666607	11669221	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	stop_codon	11666604	11666606	.	-	0	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	CDS	11666607	11666711	0.99	-	0	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	exon	11666607	11666711	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	intron	11666712	11666836	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	CDS	11666837	11666926	0.79	-	0	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	exon	11666837	11666926	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	intron	11666927	11667006	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	CDS	11667007	11667157	1	-	1	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	exon	11667007	11667157	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	intron	11667158	11667240	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	CDS	11667241	11667279	1	-	1	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	exon	11667241	11667279	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	intron	11667280	11667393	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	CDS	11667394	11667463	1	-	2	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	exon	11667394	11667463	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	intron	11667464	11667620	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	CDS	11667621	11667709	1	-	1	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	exon	11667621	11667709	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	intron	11667710	11667839	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	CDS	11667840	11667916	1	-	0	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	exon	11667840	11667916	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	intron	11667917	11668103	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	CDS	11668104	11668143	1	-	1	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	exon	11668104	11668143	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	intron	11668144	11668255	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	CDS	11668256	11668364	0.81	-	2	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	exon	11668256	11668364	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	intron	11668365	11668485	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	CDS	11668486	11669221	0.93	-	0	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	exon	11668486	11669221	.	-	.	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
Ledus.S4	AUGUSTUS	start_codon	11669219	11669221	.	-	0	transcript_id "Ledus.S4G155700.t1"; gene_id "Ledus.S4G155700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11163.t1 is derived from g4781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2270972	2273737	.	-	.	Ledus.S4G031900
Ledus.S4	AUGUSTUS	transcript	2270972	2273737	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	stop_codon	2270969	2270971	.	-	0	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	CDS	2270972	2271013	0.68	-	0	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	exon	2270972	2271013	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	intron	2271014	2271095	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	CDS	2271096	2271178	0.44	-	2	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	exon	2271096	2271178	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	intron	2271179	2271648	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	CDS	2271649	2271808	0.49	-	0	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	exon	2271649	2271808	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	intron	2271809	2271902	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	CDS	2271903	2271984	1	-	1	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	exon	2271903	2271984	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	intron	2271985	2272091	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	CDS	2272092	2272578	0.76	-	2	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	exon	2272092	2272578	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	intron	2272579	2272687	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	CDS	2272688	2272836	0.98	-	1	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	exon	2272688	2272836	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	intron	2272837	2272916	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	CDS	2272917	2273737	0.97	-	0	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	exon	2272917	2273737	.	-	.	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
Ledus.S4	AUGUSTUS	start_codon	2273735	2273737	.	-	0	transcript_id "Ledus.S4G031900.t1"; gene_id "Ledus.S4G031900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11696.t1 is derived from g5315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6048919	6050002	.	-	.	Ledus.S4G085200
Ledus.S4	AUGUSTUS	transcript	6048919	6050002	.	-	.	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	stop_codon	6048916	6048918	.	-	0	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	CDS	6048919	6048935	1	-	2	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	exon	6048919	6048935	.	-	.	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	intron	6048936	6049030	.	-	.	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	CDS	6049031	6049073	1	-	0	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	exon	6049031	6049073	.	-	.	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	intron	6049074	6049170	.	-	.	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	CDS	6049171	6049296	1	-	0	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	exon	6049171	6049296	.	-	.	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	intron	6049297	6049484	.	-	.	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	CDS	6049485	6049580	1	-	0	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	exon	6049485	6049580	.	-	.	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	intron	6049581	6049732	.	-	.	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	CDS	6049733	6049749	0.49	-	2	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	exon	6049733	6049749	.	-	.	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	intron	6049750	6049830	.	-	.	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	CDS	6049831	6050002	0.36	-	0	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	exon	6049831	6050002	.	-	.	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
Ledus.S4	AUGUSTUS	start_codon	6050000	6050002	.	-	0	transcript_id "Ledus.S4G085200.t1"; gene_id "Ledus.S4G085200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9358.t1 is derived from g10388.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6352486	6354525	.	+	.	Ledus.S3G083500
Ledus.S3	AUGUSTUS	transcript	6352486	6354525	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	start_codon	6352486	6352488	.	+	0	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	CDS	6352486	6352858	1	+	0	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	exon	6352486	6352858	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	intron	6352859	6353051	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	CDS	6353052	6353221	1	+	2	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	exon	6353052	6353221	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	intron	6353222	6353342	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	CDS	6353343	6353447	1	+	0	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	exon	6353343	6353447	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	intron	6353448	6353571	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	CDS	6353572	6353682	1	+	0	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	exon	6353572	6353682	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	intron	6353683	6353784	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	CDS	6353785	6353877	1	+	0	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	exon	6353785	6353877	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	intron	6353878	6354029	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	CDS	6354030	6354132	1	+	0	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	exon	6354030	6354132	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	intron	6354133	6354207	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	CDS	6354208	6354307	1	+	2	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	exon	6354208	6354307	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	intron	6354308	6354464	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	CDS	6354465	6354525	1	+	1	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	exon	6354465	6354525	.	+	.	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
Ledus.S3	AUGUSTUS	stop_codon	6354526	6354528	.	+	0	transcript_id "Ledus.S3G083500.t1"; gene_id "Ledus.S3G083500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12405.t1 is derived from g6026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11735106	11735839	.	-	.	Ledus.S4G156100
Ledus.S4	AUGUSTUS	transcript	11735106	11735839	.	-	.	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	stop_codon	11735103	11735105	.	-	0	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	CDS	11735106	11735252	0.94	-	0	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	exon	11735106	11735252	.	-	.	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	intron	11735253	11735357	.	-	.	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	CDS	11735358	11735436	0.96	-	1	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	exon	11735358	11735436	.	-	.	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	intron	11735437	11735511	.	-	.	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	CDS	11735512	11735647	1	-	2	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	exon	11735512	11735647	.	-	.	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	intron	11735648	11735835	.	-	.	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	CDS	11735836	11735839	0.74	-	0	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	exon	11735836	11735839	.	-	.	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
Ledus.S4	AUGUSTUS	start_codon	11735837	11735839	.	-	0	transcript_id "Ledus.S4G156100.t1"; gene_id "Ledus.S4G156100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4938.t1 is derived from g2376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20797278	20798255	.	+	.	Ledus.S1G235900
Ledus.S1	AUGUSTUS	transcript	20797278	20798255	.	+	.	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	start_codon	20797278	20797280	.	+	0	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	CDS	20797278	20797367	0.85	+	0	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	exon	20797278	20797367	.	+	.	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	intron	20797368	20797460	.	+	.	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	CDS	20797461	20797551	1	+	0	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	exon	20797461	20797551	.	+	.	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	intron	20797552	20797715	.	+	.	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	CDS	20797716	20797807	1	+	2	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	exon	20797716	20797807	.	+	.	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	intron	20797808	20798186	.	+	.	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	CDS	20798187	20798255	0.98	+	0	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	exon	20798187	20798255	.	+	.	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
Ledus.S1	AUGUSTUS	stop_codon	20798256	20798258	.	+	0	transcript_id "Ledus.S1G235900.t1"; gene_id "Ledus.S1G235900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9408.t1 is derived from g10438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6590651	6591625	.	-	.	Ledus.S3G088500
Ledus.S3	AUGUSTUS	transcript	6590651	6591625	.	-	.	transcript_id "Ledus.S3G088500.t1"; gene_id "Ledus.S3G088500"
Ledus.S3	AUGUSTUS	stop_codon	6590648	6590650	.	-	0	transcript_id "Ledus.S3G088500.t1"; gene_id "Ledus.S3G088500"
Ledus.S3	AUGUSTUS	CDS	6590651	6591625	1	-	0	transcript_id "Ledus.S3G088500.t1"; gene_id "Ledus.S3G088500"
Ledus.S3	AUGUSTUS	exon	6590651	6591625	.	-	.	transcript_id "Ledus.S3G088500.t1"; gene_id "Ledus.S3G088500"
Ledus.S3	AUGUSTUS	start_codon	6591623	6591625	.	-	0	transcript_id "Ledus.S3G088500.t1"; gene_id "Ledus.S3G088500"
# This transcript jg9128.t2 is derived from g10158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9129.t1 is derived from g10159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4720332	4723277	.	+	.	Ledus.S3G060600
Ledus.S3	AUGUSTUS	transcript	4720332	4723277	.	+	.	transcript_id "Ledus.S3G060600.t1"; gene_id "Ledus.S3G060600"
Ledus.S3	AUGUSTUS	start_codon	4720332	4720334	.	+	0	transcript_id "Ledus.S3G060600.t1"; gene_id "Ledus.S3G060600"
Ledus.S3	AUGUSTUS	CDS	4720332	4723277	0.81	+	0	transcript_id "Ledus.S3G060600.t1"; gene_id "Ledus.S3G060600"
Ledus.S3	AUGUSTUS	exon	4720332	4723277	.	+	.	transcript_id "Ledus.S3G060600.t1"; gene_id "Ledus.S3G060600"
Ledus.S3	AUGUSTUS	stop_codon	4723278	4723280	.	+	0	transcript_id "Ledus.S3G060600.t1"; gene_id "Ledus.S3G060600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1224.t1 is derived from g8085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8734962	8735822	.	-	.	Ledus.S2G110600
Ledus.S2	AUGUSTUS	transcript	8734962	8735822	.	-	.	transcript_id "Ledus.S2G110600.t1"; gene_id "Ledus.S2G110600"
Ledus.S2	AUGUSTUS	stop_codon	8734959	8734961	.	-	0	transcript_id "Ledus.S2G110600.t1"; gene_id "Ledus.S2G110600"
Ledus.S2	AUGUSTUS	CDS	8734962	8735608	1	-	2	transcript_id "Ledus.S2G110600.t1"; gene_id "Ledus.S2G110600"
Ledus.S2	AUGUSTUS	exon	8734962	8735608	.	-	.	transcript_id "Ledus.S2G110600.t1"; gene_id "Ledus.S2G110600"
Ledus.S2	AUGUSTUS	intron	8735609	8735719	.	-	.	transcript_id "Ledus.S2G110600.t1"; gene_id "Ledus.S2G110600"
Ledus.S2	AUGUSTUS	CDS	8735720	8735822	1	-	0	transcript_id "Ledus.S2G110600.t1"; gene_id "Ledus.S2G110600"
Ledus.S2	AUGUSTUS	exon	8735720	8735822	.	-	.	transcript_id "Ledus.S2G110600.t1"; gene_id "Ledus.S2G110600"
Ledus.S2	AUGUSTUS	start_codon	8735820	8735822	.	-	0	transcript_id "Ledus.S2G110600.t1"; gene_id "Ledus.S2G110600"
# This transcript jg6308.t2 is derived from g3751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6309.t1 is derived from g3752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30435335	30436415	.	-	.	Ledus.S1G373000
Ledus.S1	AUGUSTUS	transcript	30435335	30436415	.	-	.	transcript_id "Ledus.S1G373000.t1"; gene_id "Ledus.S1G373000"
Ledus.S1	AUGUSTUS	stop_codon	30435332	30435334	.	-	0	transcript_id "Ledus.S1G373000.t1"; gene_id "Ledus.S1G373000"
Ledus.S1	AUGUSTUS	CDS	30435335	30435491	1	-	1	transcript_id "Ledus.S1G373000.t1"; gene_id "Ledus.S1G373000"
Ledus.S1	AUGUSTUS	exon	30435335	30435491	.	-	.	transcript_id "Ledus.S1G373000.t1"; gene_id "Ledus.S1G373000"
Ledus.S1	AUGUSTUS	intron	30435492	30435596	.	-	.	transcript_id "Ledus.S1G373000.t1"; gene_id "Ledus.S1G373000"
Ledus.S1	AUGUSTUS	CDS	30435597	30435949	0.99	-	0	transcript_id "Ledus.S1G373000.t1"; gene_id "Ledus.S1G373000"
Ledus.S1	AUGUSTUS	exon	30435597	30435949	.	-	.	transcript_id "Ledus.S1G373000.t1"; gene_id "Ledus.S1G373000"
Ledus.S1	AUGUSTUS	intron	30435950	30436154	.	-	.	transcript_id "Ledus.S1G373000.t1"; gene_id "Ledus.S1G373000"
Ledus.S1	AUGUSTUS	CDS	30436155	30436415	0.88	-	0	transcript_id "Ledus.S1G373000.t1"; gene_id "Ledus.S1G373000"
Ledus.S1	AUGUSTUS	exon	30436155	30436415	.	-	.	transcript_id "Ledus.S1G373000.t1"; gene_id "Ledus.S1G373000"
Ledus.S1	AUGUSTUS	start_codon	30436413	30436415	.	-	0	transcript_id "Ledus.S1G373000.t1"; gene_id "Ledus.S1G373000"
# This transcript jg11538.t2 is derived from g5156.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11539.t1 is derived from g5157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5184539	5188029	.	-	.	Ledus.S4G069500
Ledus.S4	AUGUSTUS	transcript	5184539	5188029	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	stop_codon	5184536	5184538	.	-	0	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5184539	5184670	0.93	-	0	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5184539	5184670	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5184671	5184764	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5184765	5184873	1	-	1	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5184765	5184873	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5184874	5184970	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5184971	5185029	1	-	0	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5184971	5185029	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5185030	5185110	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5185111	5185199	0.67	-	2	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5185111	5185199	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5185200	5185342	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5185343	5185451	0.48	-	0	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5185343	5185451	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5185452	5185535	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5185536	5185611	1	-	1	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5185536	5185611	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5185612	5185745	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5185746	5185808	1	-	1	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5185746	5185808	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5185809	5185903	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5185904	5185998	0.92	-	0	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5185904	5185998	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5185999	5186103	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5186104	5186206	0.92	-	1	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5186104	5186206	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5186207	5186287	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5186288	5186382	0.91	-	0	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5186288	5186382	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5186383	5186501	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5186502	5186575	0.9	-	2	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5186502	5186575	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5186576	5186727	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5186728	5187026	1	-	1	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5186728	5187026	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5187027	5187113	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5187114	5187240	1	-	2	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5187114	5187240	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5187241	5187380	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5187381	5187497	1	-	2	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5187381	5187497	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	intron	5187498	5187638	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	CDS	5187639	5188029	0.64	-	0	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	exon	5187639	5188029	.	-	.	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
Ledus.S4	AUGUSTUS	start_codon	5188027	5188029	.	-	0	transcript_id "Ledus.S4G069500.t1"; gene_id "Ledus.S4G069500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9995.t1 is derived from g11025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11770285	11773170	.	-	.	Ledus.S3G147200
Ledus.S3	AUGUSTUS	transcript	11770285	11773170	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	stop_codon	11770282	11770284	.	-	0	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11770285	11770630	0.59	-	1	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11770285	11770630	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	intron	11770631	11770871	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11770872	11770954	0.88	-	0	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11770872	11770954	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	intron	11770955	11771113	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11771114	11771221	0.94	-	0	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11771114	11771221	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	intron	11771222	11771304	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11771305	11771372	0.94	-	2	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11771305	11771372	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	intron	11771373	11771457	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11771458	11771536	1	-	0	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11771458	11771536	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	intron	11771537	11771630	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11771631	11771681	1	-	0	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11771631	11771681	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	intron	11771682	11771797	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11771798	11771857	1	-	0	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11771798	11771857	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	intron	11771858	11771968	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11771969	11772044	1	-	1	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11771969	11772044	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	intron	11772045	11772169	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11772170	11772303	1	-	0	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11772170	11772303	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	intron	11772304	11772429	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11772430	11772634	1	-	1	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11772430	11772634	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	intron	11772635	11772709	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11772710	11772774	1	-	0	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11772710	11772774	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	intron	11772775	11772930	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11772931	11772987	1	-	0	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11772931	11772987	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	intron	11772988	11773080	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	CDS	11773081	11773170	0.94	-	0	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	exon	11773081	11773170	.	-	.	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
Ledus.S3	AUGUSTUS	start_codon	11773168	11773170	.	-	0	transcript_id "Ledus.S3G147200.t1"; gene_id "Ledus.S3G147200"
# This transcript jg3628.t2 is derived from g1064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3629.t1 is derived from g1065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10275781	10280649	.	+	.	Ledus.S1G105000
Ledus.S1	AUGUSTUS	transcript	10275781	10280649	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	start_codon	10275781	10275783	.	+	0	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10275781	10276059	0.56	+	0	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10275781	10276059	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	intron	10276060	10276310	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10276311	10276427	1	+	0	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10276311	10276427	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	intron	10276428	10276691	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10276692	10276756	1	+	0	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10276692	10276756	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	intron	10276757	10276943	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10276944	10277058	1	+	1	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10276944	10277058	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	intron	10277059	10277192	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10277193	10277264	1	+	0	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10277193	10277264	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	intron	10277265	10277409	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10277410	10277469	1	+	0	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10277410	10277469	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	intron	10277470	10277616	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10277617	10277746	0.99	+	0	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10277617	10277746	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	intron	10277747	10277870	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10277871	10278055	0.9	+	2	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10277871	10278055	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	intron	10278056	10278168	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10278169	10278362	0.99	+	0	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10278169	10278362	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	intron	10278363	10278557	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10278558	10278688	1	+	1	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10278558	10278688	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	intron	10278689	10278791	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10278792	10279099	0.84	+	2	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10278792	10279099	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	intron	10279100	10279209	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10279210	10279459	1	+	0	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10279210	10279459	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	intron	10279460	10279672	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	CDS	10279673	10280649	0.87	+	2	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	exon	10279673	10280649	.	+	.	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
Ledus.S1	AUGUSTUS	stop_codon	10280650	10280652	.	+	0	transcript_id "Ledus.S1G105000.t1"; gene_id "Ledus.S1G105000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11811.t1 is derived from g5430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6882196	6885826	.	-	.	Ledus.S4G096700
Ledus.S4	AUGUSTUS	transcript	6882196	6885826	.	-	.	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	stop_codon	6882193	6882195	.	-	0	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	CDS	6882196	6883020	0.99	-	0	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	exon	6882196	6883020	.	-	.	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	intron	6883021	6883104	.	-	.	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	CDS	6883105	6883977	0.89	-	0	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	exon	6883105	6883977	.	-	.	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	intron	6883978	6884075	.	-	.	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	CDS	6884076	6884457	0.86	-	1	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	exon	6884076	6884457	.	-	.	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	intron	6884458	6884775	.	-	.	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	CDS	6884776	6884960	0.66	-	0	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	exon	6884776	6884960	.	-	.	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	intron	6884961	6885505	.	-	.	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	CDS	6885506	6885555	0.68	-	2	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	exon	6885506	6885555	.	-	.	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	intron	6885556	6885657	.	-	.	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	CDS	6885658	6885826	0.81	-	0	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	exon	6885658	6885826	.	-	.	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
Ledus.S4	AUGUSTUS	start_codon	6885824	6885826	.	-	0	transcript_id "Ledus.S4G096700.t1"; gene_id "Ledus.S4G096700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6079.t1 is derived from g3522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28832540	28834174	.	+	.	Ledus.S1G350000
Ledus.S1	AUGUSTUS	transcript	28832540	28834174	.	+	.	transcript_id "Ledus.S1G350000.t1"; gene_id "Ledus.S1G350000"
Ledus.S1	AUGUSTUS	start_codon	28832540	28832542	.	+	0	transcript_id "Ledus.S1G350000.t1"; gene_id "Ledus.S1G350000"
Ledus.S1	AUGUSTUS	CDS	28832540	28833005	0.39	+	0	transcript_id "Ledus.S1G350000.t1"; gene_id "Ledus.S1G350000"
Ledus.S1	AUGUSTUS	exon	28832540	28833005	.	+	.	transcript_id "Ledus.S1G350000.t1"; gene_id "Ledus.S1G350000"
Ledus.S1	AUGUSTUS	intron	28833006	28833114	.	+	.	transcript_id "Ledus.S1G350000.t1"; gene_id "Ledus.S1G350000"
Ledus.S1	AUGUSTUS	CDS	28833115	28833323	1	+	2	transcript_id "Ledus.S1G350000.t1"; gene_id "Ledus.S1G350000"
Ledus.S1	AUGUSTUS	exon	28833115	28833323	.	+	.	transcript_id "Ledus.S1G350000.t1"; gene_id "Ledus.S1G350000"
Ledus.S1	AUGUSTUS	intron	28833324	28833514	.	+	.	transcript_id "Ledus.S1G350000.t1"; gene_id "Ledus.S1G350000"
Ledus.S1	AUGUSTUS	CDS	28833515	28834174	1	+	0	transcript_id "Ledus.S1G350000.t1"; gene_id "Ledus.S1G350000"
Ledus.S1	AUGUSTUS	exon	28833515	28834174	.	+	.	transcript_id "Ledus.S1G350000.t1"; gene_id "Ledus.S1G350000"
Ledus.S1	AUGUSTUS	stop_codon	28834175	28834177	.	+	0	transcript_id "Ledus.S1G350000.t1"; gene_id "Ledus.S1G350000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4238.t1 is derived from g1674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15708036	15708410	.	-	.	Ledus.S1G165900
Ledus.S1	AUGUSTUS	transcript	15708036	15708410	.	-	.	transcript_id "Ledus.S1G165900.t1"; gene_id "Ledus.S1G165900"
Ledus.S1	AUGUSTUS	stop_codon	15708033	15708035	.	-	0	transcript_id "Ledus.S1G165900.t1"; gene_id "Ledus.S1G165900"
Ledus.S1	AUGUSTUS	CDS	15708036	15708410	0.54	-	0	transcript_id "Ledus.S1G165900.t1"; gene_id "Ledus.S1G165900"
Ledus.S1	AUGUSTUS	exon	15708036	15708410	.	-	.	transcript_id "Ledus.S1G165900.t1"; gene_id "Ledus.S1G165900"
Ledus.S1	AUGUSTUS	start_codon	15708408	15708410	.	-	0	transcript_id "Ledus.S1G165900.t1"; gene_id "Ledus.S1G165900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11995.t1 is derived from g5614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8382456	8382806	.	-	.	Ledus.S4G115100
Ledus.S4	AUGUSTUS	transcript	8382456	8382806	.	-	.	transcript_id "Ledus.S4G115100.t1"; gene_id "Ledus.S4G115100"
Ledus.S4	AUGUSTUS	stop_codon	8382453	8382455	.	-	0	transcript_id "Ledus.S4G115100.t1"; gene_id "Ledus.S4G115100"
Ledus.S4	AUGUSTUS	CDS	8382456	8382806	0.6	-	0	transcript_id "Ledus.S4G115100.t1"; gene_id "Ledus.S4G115100"
Ledus.S4	AUGUSTUS	exon	8382456	8382806	.	-	.	transcript_id "Ledus.S4G115100.t1"; gene_id "Ledus.S4G115100"
Ledus.S4	AUGUSTUS	start_codon	8382804	8382806	.	-	0	transcript_id "Ledus.S4G115100.t1"; gene_id "Ledus.S4G115100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11293.t1 is derived from g4911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3418640	3419094	.	+	.	Ledus.S4G044900
Ledus.S4	AUGUSTUS	transcript	3418640	3419094	.	+	.	transcript_id "Ledus.S4G044900.t1"; gene_id "Ledus.S4G044900"
Ledus.S4	AUGUSTUS	start_codon	3418640	3418642	.	+	0	transcript_id "Ledus.S4G044900.t1"; gene_id "Ledus.S4G044900"
Ledus.S4	AUGUSTUS	CDS	3418640	3418705	0.95	+	0	transcript_id "Ledus.S4G044900.t1"; gene_id "Ledus.S4G044900"
Ledus.S4	AUGUSTUS	exon	3418640	3418705	.	+	.	transcript_id "Ledus.S4G044900.t1"; gene_id "Ledus.S4G044900"
Ledus.S4	AUGUSTUS	intron	3418706	3418893	.	+	.	transcript_id "Ledus.S4G044900.t1"; gene_id "Ledus.S4G044900"
Ledus.S4	AUGUSTUS	CDS	3418894	3419094	0.63	+	0	transcript_id "Ledus.S4G044900.t1"; gene_id "Ledus.S4G044900"
Ledus.S4	AUGUSTUS	exon	3418894	3419094	.	+	.	transcript_id "Ledus.S4G044900.t1"; gene_id "Ledus.S4G044900"
Ledus.S4	AUGUSTUS	stop_codon	3419095	3419097	.	+	0	transcript_id "Ledus.S4G044900.t1"; gene_id "Ledus.S4G044900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8070.t1 is derived from g12741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9036735	9038974	.	+	.	Ledus.S5G084800
Ledus.S5	AUGUSTUS	transcript	9036735	9038974	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	start_codon	9036735	9036737	.	+	0	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9036735	9036817	0.58	+	0	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9036735	9036817	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	intron	9036818	9036958	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9036959	9037071	1	+	1	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9036959	9037071	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	intron	9037072	9037146	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9037147	9037182	1	+	2	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9037147	9037182	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	intron	9037183	9037252	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9037253	9037326	1	+	2	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9037253	9037326	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	intron	9037327	9037408	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9037409	9037449	1	+	0	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9037409	9037449	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	intron	9037450	9037562	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9037563	9037634	0.97	+	1	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9037563	9037634	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	intron	9037635	9037719	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9037720	9037894	1	+	1	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9037720	9037894	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	intron	9037895	9037972	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9037973	9038068	1	+	0	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9037973	9038068	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	intron	9038069	9038148	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9038149	9038216	1	+	0	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9038149	9038216	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	intron	9038217	9038298	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9038299	9038413	1	+	1	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9038299	9038413	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	intron	9038414	9038548	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9038549	9038623	1	+	0	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9038549	9038623	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	intron	9038624	9038712	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9038713	9038796	0.99	+	0	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9038713	9038796	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	intron	9038797	9038911	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	CDS	9038912	9038974	1	+	0	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	exon	9038912	9038974	.	+	.	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
Ledus.S5	AUGUSTUS	stop_codon	9038975	9038977	.	+	0	transcript_id "Ledus.S5G084800.t1"; gene_id "Ledus.S5G084800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7314.t1 is derived from g11985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1038249	1038455	.	+	.	Ledus.S5G009200
Ledus.S5	AUGUSTUS	transcript	1038249	1038455	.	+	.	transcript_id "Ledus.S5G009200.t1"; gene_id "Ledus.S5G009200"
Ledus.S5	AUGUSTUS	start_codon	1038249	1038251	.	+	0	transcript_id "Ledus.S5G009200.t1"; gene_id "Ledus.S5G009200"
Ledus.S5	AUGUSTUS	CDS	1038249	1038455	0.78	+	0	transcript_id "Ledus.S5G009200.t1"; gene_id "Ledus.S5G009200"
Ledus.S5	AUGUSTUS	exon	1038249	1038455	.	+	.	transcript_id "Ledus.S5G009200.t1"; gene_id "Ledus.S5G009200"
Ledus.S5	AUGUSTUS	stop_codon	1038456	1038458	.	+	0	transcript_id "Ledus.S5G009200.t1"; gene_id "Ledus.S5G009200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg668.t1 is derived from g7529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3990574	3994391	.	+	.	Ledus.S2G055000
Ledus.S2	AUGUSTUS	transcript	3990574	3994391	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	start_codon	3990574	3990576	.	+	0	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	CDS	3990574	3990750	0.46	+	0	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	exon	3990574	3990750	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	intron	3990751	3990867	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	CDS	3990868	3991044	0.76	+	0	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	exon	3990868	3991044	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	intron	3991045	3991168	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	CDS	3991169	3991372	0.91	+	0	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	exon	3991169	3991372	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	intron	3991373	3991487	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	CDS	3991488	3991589	1	+	0	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	exon	3991488	3991589	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	intron	3991590	3991748	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	CDS	3991749	3991826	1	+	0	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	exon	3991749	3991826	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	intron	3991827	3991935	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	CDS	3991936	3992103	0.94	+	0	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	exon	3991936	3992103	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	intron	3992104	3992272	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	CDS	3992273	3993075	1	+	0	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	exon	3992273	3993075	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	intron	3993076	3993216	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	CDS	3993217	3993379	1	+	1	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	exon	3993217	3993379	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	intron	3993380	3993472	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	CDS	3993473	3993822	0.98	+	0	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	exon	3993473	3993822	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	intron	3993823	3994036	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	CDS	3994037	3994120	1	+	1	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	exon	3994037	3994120	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	intron	3994121	3994336	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	CDS	3994337	3994391	1	+	1	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	exon	3994337	3994391	.	+	.	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
Ledus.S2	AUGUSTUS	stop_codon	3994392	3994394	.	+	0	transcript_id "Ledus.S2G055000.t1"; gene_id "Ledus.S2G055000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8850.t1 is derived from g9880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2275739	2276900	.	+	.	Ledus.S3G032700
Ledus.S3	AUGUSTUS	transcript	2275739	2276900	.	+	.	transcript_id "Ledus.S3G032700.t1"; gene_id "Ledus.S3G032700"
Ledus.S3	AUGUSTUS	start_codon	2275739	2275741	.	+	0	transcript_id "Ledus.S3G032700.t1"; gene_id "Ledus.S3G032700"
Ledus.S3	AUGUSTUS	CDS	2275739	2275822	0.63	+	0	transcript_id "Ledus.S3G032700.t1"; gene_id "Ledus.S3G032700"
Ledus.S3	AUGUSTUS	exon	2275739	2275822	.	+	.	transcript_id "Ledus.S3G032700.t1"; gene_id "Ledus.S3G032700"
Ledus.S3	AUGUSTUS	intron	2275823	2276627	.	+	.	transcript_id "Ledus.S3G032700.t1"; gene_id "Ledus.S3G032700"
Ledus.S3	AUGUSTUS	CDS	2276628	2276900	0.92	+	0	transcript_id "Ledus.S3G032700.t1"; gene_id "Ledus.S3G032700"
Ledus.S3	AUGUSTUS	exon	2276628	2276900	.	+	.	transcript_id "Ledus.S3G032700.t1"; gene_id "Ledus.S3G032700"
Ledus.S3	AUGUSTUS	stop_codon	2276901	2276903	.	+	0	transcript_id "Ledus.S3G032700.t1"; gene_id "Ledus.S3G032700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11487.t1 is derived from g5105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4885224	4885913	.	+	.	Ledus.S4G064300
Ledus.S4	AUGUSTUS	transcript	4885224	4885913	.	+	.	transcript_id "Ledus.S4G064300.t1"; gene_id "Ledus.S4G064300"
Ledus.S4	AUGUSTUS	start_codon	4885224	4885226	.	+	0	transcript_id "Ledus.S4G064300.t1"; gene_id "Ledus.S4G064300"
Ledus.S4	AUGUSTUS	CDS	4885224	4885229	0.86	+	0	transcript_id "Ledus.S4G064300.t1"; gene_id "Ledus.S4G064300"
Ledus.S4	AUGUSTUS	exon	4885224	4885229	.	+	.	transcript_id "Ledus.S4G064300.t1"; gene_id "Ledus.S4G064300"
Ledus.S4	AUGUSTUS	intron	4885230	4885312	.	+	.	transcript_id "Ledus.S4G064300.t1"; gene_id "Ledus.S4G064300"
Ledus.S4	AUGUSTUS	CDS	4885313	4885460	1	+	0	transcript_id "Ledus.S4G064300.t1"; gene_id "Ledus.S4G064300"
Ledus.S4	AUGUSTUS	exon	4885313	4885460	.	+	.	transcript_id "Ledus.S4G064300.t1"; gene_id "Ledus.S4G064300"
Ledus.S4	AUGUSTUS	intron	4885461	4885581	.	+	.	transcript_id "Ledus.S4G064300.t1"; gene_id "Ledus.S4G064300"
Ledus.S4	AUGUSTUS	CDS	4885582	4885913	0.98	+	2	transcript_id "Ledus.S4G064300.t1"; gene_id "Ledus.S4G064300"
Ledus.S4	AUGUSTUS	exon	4885582	4885913	.	+	.	transcript_id "Ledus.S4G064300.t1"; gene_id "Ledus.S4G064300"
Ledus.S4	AUGUSTUS	stop_codon	4885914	4885916	.	+	0	transcript_id "Ledus.S4G064300.t1"; gene_id "Ledus.S4G064300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10057.t1 is derived from g11087.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12307552	12310887	.	-	.	Ledus.S3G153400
Ledus.S3	AUGUSTUS	transcript	12307552	12310887	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	stop_codon	12307549	12307551	.	-	0	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	CDS	12307552	12308582	0.96	-	2	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	exon	12307552	12308582	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	intron	12308583	12308704	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	CDS	12308705	12308959	1	-	2	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	exon	12308705	12308959	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	intron	12308960	12309046	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	CDS	12309047	12309161	1	-	0	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	exon	12309047	12309161	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	intron	12309162	12309244	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	CDS	12309245	12309297	1	-	2	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	exon	12309245	12309297	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	intron	12309298	12309392	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	CDS	12309393	12309653	1	-	2	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	exon	12309393	12309653	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	intron	12309654	12309799	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	CDS	12309800	12309850	1	-	2	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	exon	12309800	12309850	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	intron	12309851	12310018	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	CDS	12310019	12310264	1	-	2	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	exon	12310019	12310264	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	intron	12310265	12310430	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	CDS	12310431	12310665	1	-	0	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	exon	12310431	12310665	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	intron	12310666	12310761	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	CDS	12310762	12310887	0.95	-	0	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	exon	12310762	12310887	.	-	.	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
Ledus.S3	AUGUSTUS	start_codon	12310885	12310887	.	-	0	transcript_id "Ledus.S3G153400.t1"; gene_id "Ledus.S3G153400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg3234.t1 is derived from g669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7052067	7055168	.	-	.	Ledus.S1G065500
Ledus.S1	AUGUSTUS	transcript	7054523	7055168	.	-	.	transcript_id "Ledus.S1G065500.t1"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	stop_codon	7054520	7054522	.	-	0	transcript_id "Ledus.S1G065500.t1"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7054523	7054554	0.78	-	2	transcript_id "Ledus.S1G065500.t1"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7054523	7054554	.	-	.	transcript_id "Ledus.S1G065500.t1"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	intron	7054555	7054722	.	-	.	transcript_id "Ledus.S1G065500.t1"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7054723	7054930	1	-	0	transcript_id "Ledus.S1G065500.t1"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7054723	7054930	.	-	.	transcript_id "Ledus.S1G065500.t1"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	intron	7054931	7055045	.	-	.	transcript_id "Ledus.S1G065500.t1"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7055046	7055168	0.97	-	0	transcript_id "Ledus.S1G065500.t1"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7055046	7055168	.	-	.	transcript_id "Ledus.S1G065500.t1"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	start_codon	7055166	7055168	.	-	0	transcript_id "Ledus.S1G065500.t1"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	transcript	7052067	7055168	.	-	.	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	stop_codon	7052064	7052066	.	-	0	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7052067	7052162	0.82	-	0	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7052067	7052162	.	-	.	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	intron	7052163	7052331	.	-	.	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7052332	7052371	0.86	-	1	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7052332	7052371	.	-	.	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	intron	7052372	7052471	.	-	.	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7052472	7054461	0.78	-	2	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7052472	7054461	.	-	.	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	intron	7054462	7054722	.	-	.	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7054723	7054930	0.99	-	0	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7054723	7054930	.	-	.	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	intron	7054931	7055045	.	-	.	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7055046	7055168	0.97	-	0	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7055046	7055168	.	-	.	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	start_codon	7055166	7055168	.	-	0	transcript_id "Ledus.S1G065500.t2"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	transcript	7052067	7055168	.	-	.	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	stop_codon	7052064	7052066	.	-	0	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7052067	7052157	0.88	-	1	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7052067	7052157	.	-	.	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	intron	7052158	7052331	.	-	.	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7052332	7052360	0.63	-	0	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7052332	7052360	.	-	.	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	intron	7052361	7052674	.	-	.	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7052675	7054461	0.56	-	2	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7052675	7054461	.	-	.	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	intron	7054462	7054722	.	-	.	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7054723	7054930	0.99	-	0	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7054723	7054930	.	-	.	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	intron	7054931	7055045	.	-	.	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	CDS	7055046	7055168	0.94	-	0	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	exon	7055046	7055168	.	-	.	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
Ledus.S1	AUGUSTUS	start_codon	7055166	7055168	.	-	0	transcript_id "Ledus.S1G065500.t3"; gene_id "Ledus.S1G065500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1530.t1 is derived from g8391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10813591	10814425	.	+	.	Ledus.S2G141200
Ledus.S2	AUGUSTUS	transcript	10813591	10814425	.	+	.	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	start_codon	10813591	10813593	.	+	0	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	CDS	10813591	10813772	0.92	+	0	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	exon	10813591	10813772	.	+	.	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	intron	10813773	10813853	.	+	.	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	CDS	10813854	10814031	0.98	+	1	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	exon	10813854	10814031	.	+	.	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	intron	10814032	10814154	.	+	.	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	CDS	10814155	10814281	0.93	+	0	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	exon	10814155	10814281	.	+	.	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	intron	10814282	10814363	.	+	.	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	CDS	10814364	10814425	0.78	+	2	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	exon	10814364	10814425	.	+	.	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
Ledus.S2	AUGUSTUS	stop_codon	10814426	10814428	.	+	0	transcript_id "Ledus.S2G141200.t1"; gene_id "Ledus.S2G141200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7830.t1 is derived from g12501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7304174	7306303	.	+	.	Ledus.S5G060800
Ledus.S5	AUGUSTUS	transcript	7304174	7306303	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	start_codon	7304174	7304176	.	+	0	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	CDS	7304174	7304176	1	+	0	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	exon	7304174	7304176	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	intron	7304177	7304348	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	CDS	7304349	7304420	1	+	0	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	exon	7304349	7304420	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	intron	7304421	7304569	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	CDS	7304570	7304667	1	+	0	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	exon	7304570	7304667	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	intron	7304668	7304757	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	CDS	7304758	7304794	0.99	+	1	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	exon	7304758	7304794	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	intron	7304795	7304975	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	CDS	7304976	7305038	0.93	+	0	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	exon	7304976	7305038	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	intron	7305039	7305508	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	CDS	7305509	7305818	0.27	+	0	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	exon	7305509	7305818	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	intron	7305819	7305908	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	CDS	7305909	7306303	0.33	+	2	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	exon	7305909	7306303	.	+	.	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
Ledus.S5	AUGUSTUS	stop_codon	7306304	7306306	.	+	0	transcript_id "Ledus.S5G060800.t1"; gene_id "Ledus.S5G060800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1580.t1 is derived from g8441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11098842	11107741	.	+	.	Ledus.S2G146200
Ledus.S2	AUGUSTUS	transcript	11098842	11107741	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	start_codon	11098842	11098844	.	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11098842	11098975	0.55	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11098842	11098975	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11098976	11099086	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11099087	11099176	0.98	+	1	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11099087	11099176	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11099177	11099257	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11099258	11099378	0.96	+	1	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11099258	11099378	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11099379	11099483	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11099484	11099634	0.99	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11099484	11099634	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11099635	11099790	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11099791	11100041	0.51	+	2	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11099791	11100041	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11100042	11100142	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11100143	11100236	0.75	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11100143	11100236	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11100237	11100340	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11100341	11100468	0.98	+	2	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11100341	11100468	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11100469	11100564	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11100565	11100680	1	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11100565	11100680	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11100681	11100772	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11100773	11100860	1	+	1	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11100773	11100860	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11100861	11101078	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11101079	11101126	0.61	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11101079	11101126	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11101127	11101330	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11101331	11101498	0.94	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11101331	11101498	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11101499	11101583	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11101584	11101651	0.94	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11101584	11101651	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11101652	11101933	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11101934	11102158	0.92	+	1	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11101934	11102158	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11102159	11102268	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11102269	11102333	1	+	1	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11102269	11102333	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11102334	11102515	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11102516	11102573	1	+	2	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11102516	11102573	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11102574	11102770	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11102771	11102900	1	+	1	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11102771	11102900	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11102901	11102986	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11102987	11103058	1	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11102987	11103058	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11103059	11103138	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11103139	11103222	0.84	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11103139	11103222	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11103223	11103664	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11103665	11103784	0.97	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11103665	11103784	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11103785	11103896	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11103897	11103974	1	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11103897	11103974	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11103975	11104074	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11104075	11105204	1	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11104075	11105204	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11105205	11105308	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11105309	11105519	1	+	1	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11105309	11105519	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11105520	11105606	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11105607	11105732	0.94	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11105607	11105732	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11105733	11105839	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11105840	11106120	0.97	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11105840	11106120	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11106121	11106216	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11106217	11106351	1	+	1	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11106217	11106351	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11106352	11106431	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11106432	11106591	1	+	1	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11106432	11106591	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11106592	11106674	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11106675	11106899	1	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11106675	11106899	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11106900	11106983	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11106984	11107127	1	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11106984	11107127	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11107128	11107207	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11107208	11107386	0.89	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11107208	11107386	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	intron	11107387	11107470	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	CDS	11107471	11107741	0.99	+	1	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	exon	11107471	11107741	.	+	.	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
Ledus.S2	AUGUSTUS	stop_codon	11107742	11107744	.	+	0	transcript_id "Ledus.S2G146200.t1"; gene_id "Ledus.S2G146200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7550.t1 is derived from g12221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3930663	3931655	.	-	.	Ledus.S5G032800
Ledus.S5	AUGUSTUS	transcript	3930663	3931655	.	-	.	transcript_id "Ledus.S5G032800.t1"; gene_id "Ledus.S5G032800"
Ledus.S5	AUGUSTUS	stop_codon	3930660	3930662	.	-	0	transcript_id "Ledus.S5G032800.t1"; gene_id "Ledus.S5G032800"
Ledus.S5	AUGUSTUS	CDS	3930663	3930882	0.32	-	1	transcript_id "Ledus.S5G032800.t1"; gene_id "Ledus.S5G032800"
Ledus.S5	AUGUSTUS	exon	3930663	3930882	.	-	.	transcript_id "Ledus.S5G032800.t1"; gene_id "Ledus.S5G032800"
Ledus.S5	AUGUSTUS	intron	3930883	3930962	.	-	.	transcript_id "Ledus.S5G032800.t1"; gene_id "Ledus.S5G032800"
Ledus.S5	AUGUSTUS	CDS	3930963	3931207	0.36	-	0	transcript_id "Ledus.S5G032800.t1"; gene_id "Ledus.S5G032800"
Ledus.S5	AUGUSTUS	exon	3930963	3931207	.	-	.	transcript_id "Ledus.S5G032800.t1"; gene_id "Ledus.S5G032800"
Ledus.S5	AUGUSTUS	intron	3931208	3931310	.	-	.	transcript_id "Ledus.S5G032800.t1"; gene_id "Ledus.S5G032800"
Ledus.S5	AUGUSTUS	CDS	3931311	3931655	0.43	-	0	transcript_id "Ledus.S5G032800.t1"; gene_id "Ledus.S5G032800"
Ledus.S5	AUGUSTUS	exon	3931311	3931655	.	-	.	transcript_id "Ledus.S5G032800.t1"; gene_id "Ledus.S5G032800"
Ledus.S5	AUGUSTUS	start_codon	3931653	3931655	.	-	0	transcript_id "Ledus.S5G032800.t1"; gene_id "Ledus.S5G032800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1049.t1 is derived from g7910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6999816	7001139	.	+	.	Ledus.S2G093100
Ledus.S2	AUGUSTUS	transcript	6999816	7001139	.	+	.	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	start_codon	6999816	6999818	.	+	0	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	CDS	6999816	7000122	0.84	+	0	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	exon	6999816	7000122	.	+	.	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	intron	7000123	7000270	.	+	.	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	CDS	7000271	7000435	0.9	+	2	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	exon	7000271	7000435	.	+	.	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	intron	7000436	7000545	.	+	.	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	CDS	7000546	7001033	0.76	+	2	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	exon	7000546	7001033	.	+	.	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	intron	7001034	7001121	.	+	.	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	CDS	7001122	7001139	0.98	+	0	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	exon	7001122	7001139	.	+	.	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
Ledus.S2	AUGUSTUS	stop_codon	7001140	7001142	.	+	0	transcript_id "Ledus.S2G093100.t1"; gene_id "Ledus.S2G093100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9220.t1 is derived from g10250.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5464219	5470848	.	+	.	Ledus.S3G069700
Ledus.S3	AUGUSTUS	transcript	5464219	5470848	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	start_codon	5464219	5464221	.	+	0	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5464219	5464237	1	+	0	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5464219	5464237	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5464238	5464358	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5464359	5464603	1	+	2	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5464359	5464603	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5464604	5464724	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5464725	5464857	1	+	0	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5464725	5464857	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5464858	5465002	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5465003	5465176	1	+	2	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5465003	5465176	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5465177	5465297	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5465298	5465524	1	+	2	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5465298	5465524	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5465525	5465663	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5465664	5465928	1	+	0	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5465664	5465928	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5465929	5466016	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5466017	5466196	1	+	2	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5466017	5466196	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5466197	5466306	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5466307	5466521	1	+	2	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5466307	5466521	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5466522	5466602	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5466603	5466877	0.51	+	0	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5466603	5466877	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5466878	5467314	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5467315	5467369	0.9	+	1	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5467315	5467369	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5467370	5469087	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5469088	5469345	0.99	+	0	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5469088	5469345	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5469346	5469487	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5469488	5469764	1	+	0	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5469488	5469764	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5469765	5470001	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5470002	5470156	1	+	2	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5470002	5470156	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5470157	5470276	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5470277	5470410	1	+	0	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5470277	5470410	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	intron	5470411	5470700	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	CDS	5470701	5470848	1	+	1	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	exon	5470701	5470848	.	+	.	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
Ledus.S3	AUGUSTUS	stop_codon	5470849	5470851	.	+	0	transcript_id "Ledus.S3G069700.t1"; gene_id "Ledus.S3G069700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5629.t1 is derived from g3068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25441780	25444315	.	-	.	Ledus.S1G305000
Ledus.S1	AUGUSTUS	transcript	25441780	25444315	.	-	.	transcript_id "Ledus.S1G305000.t1"; gene_id "Ledus.S1G305000"
Ledus.S1	AUGUSTUS	stop_codon	25441777	25441779	.	-	0	transcript_id "Ledus.S1G305000.t1"; gene_id "Ledus.S1G305000"
Ledus.S1	AUGUSTUS	CDS	25441780	25442216	0.55	-	2	transcript_id "Ledus.S1G305000.t1"; gene_id "Ledus.S1G305000"
Ledus.S1	AUGUSTUS	exon	25441780	25442216	.	-	.	transcript_id "Ledus.S1G305000.t1"; gene_id "Ledus.S1G305000"
Ledus.S1	AUGUSTUS	intron	25442217	25442364	.	-	.	transcript_id "Ledus.S1G305000.t1"; gene_id "Ledus.S1G305000"
Ledus.S1	AUGUSTUS	CDS	25442365	25444315	0.82	-	0	transcript_id "Ledus.S1G305000.t1"; gene_id "Ledus.S1G305000"
Ledus.S1	AUGUSTUS	exon	25442365	25444315	.	-	.	transcript_id "Ledus.S1G305000.t1"; gene_id "Ledus.S1G305000"
Ledus.S1	AUGUSTUS	start_codon	25444313	25444315	.	-	0	transcript_id "Ledus.S1G305000.t1"; gene_id "Ledus.S1G305000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8808.t1 is derived from g9838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2076102	2076528	.	-	.	Ledus.S3G028500
Ledus.S3	AUGUSTUS	transcript	2076102	2076528	.	-	.	transcript_id "Ledus.S3G028500.t1"; gene_id "Ledus.S3G028500"
Ledus.S3	AUGUSTUS	stop_codon	2076099	2076101	.	-	0	transcript_id "Ledus.S3G028500.t1"; gene_id "Ledus.S3G028500"
Ledus.S3	AUGUSTUS	CDS	2076102	2076195	0.29	-	1	transcript_id "Ledus.S3G028500.t1"; gene_id "Ledus.S3G028500"
Ledus.S3	AUGUSTUS	exon	2076102	2076195	.	-	.	transcript_id "Ledus.S3G028500.t1"; gene_id "Ledus.S3G028500"
Ledus.S3	AUGUSTUS	intron	2076196	2076301	.	-	.	transcript_id "Ledus.S3G028500.t1"; gene_id "Ledus.S3G028500"
Ledus.S3	AUGUSTUS	CDS	2076302	2076528	0.49	-	0	transcript_id "Ledus.S3G028500.t1"; gene_id "Ledus.S3G028500"
Ledus.S3	AUGUSTUS	exon	2076302	2076528	.	-	.	transcript_id "Ledus.S3G028500.t1"; gene_id "Ledus.S3G028500"
Ledus.S3	AUGUSTUS	start_codon	2076526	2076528	.	-	0	transcript_id "Ledus.S3G028500.t1"; gene_id "Ledus.S3G028500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11056.t1 is derived from g4674.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1499712	1504145	.	+	.	Ledus.S4G021200
Ledus.S4	AUGUSTUS	transcript	1499712	1503064	.	+	.	transcript_id "Ledus.S4G021200.t1"; gene_id "Ledus.S4G021200"
Ledus.S4	AUGUSTUS	start_codon	1499712	1499714	.	+	0	transcript_id "Ledus.S4G021200.t1"; gene_id "Ledus.S4G021200"
Ledus.S4	AUGUSTUS	CDS	1499712	1502975	0.79	+	0	transcript_id "Ledus.S4G021200.t1"; gene_id "Ledus.S4G021200"
Ledus.S4	AUGUSTUS	exon	1499712	1502975	.	+	.	transcript_id "Ledus.S4G021200.t1"; gene_id "Ledus.S4G021200"
Ledus.S4	AUGUSTUS	intron	1502976	1503046	.	+	.	transcript_id "Ledus.S4G021200.t1"; gene_id "Ledus.S4G021200"
Ledus.S4	AUGUSTUS	CDS	1503047	1503064	0.96	+	0	transcript_id "Ledus.S4G021200.t1"; gene_id "Ledus.S4G021200"
Ledus.S4	AUGUSTUS	exon	1503047	1503064	.	+	.	transcript_id "Ledus.S4G021200.t1"; gene_id "Ledus.S4G021200"
Ledus.S4	AUGUSTUS	stop_codon	1503065	1503067	.	+	0	transcript_id "Ledus.S4G021200.t1"; gene_id "Ledus.S4G021200"
Ledus.S4	AUGUSTUS	transcript	1499712	1504145	.	+	.	transcript_id "Ledus.S4G021200.t2"; gene_id "Ledus.S4G021200"
Ledus.S4	AUGUSTUS	start_codon	1499712	1499714	.	+	0	transcript_id "Ledus.S4G021200.t2"; gene_id "Ledus.S4G021200"
Ledus.S4	AUGUSTUS	CDS	1499712	1504145	1	+	0	transcript_id "Ledus.S4G021200.t2"; gene_id "Ledus.S4G021200"
Ledus.S4	AUGUSTUS	exon	1499712	1504145	.	+	.	transcript_id "Ledus.S4G021200.t2"; gene_id "Ledus.S4G021200"
Ledus.S4	AUGUSTUS	stop_codon	1504146	1504148	.	+	0	transcript_id "Ledus.S4G021200.t2"; gene_id "Ledus.S4G021200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12798.t1 is derived from g6420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14668325	14671758	.	+	.	Ledus.S4G195400
Ledus.S4	AUGUSTUS	transcript	14668325	14671758	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	start_codon	14668325	14668327	.	+	0	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	CDS	14668325	14668422	0.99	+	0	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	exon	14668325	14668422	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	intron	14668423	14668986	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	CDS	14668987	14669080	1	+	1	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	exon	14668987	14669080	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	intron	14669081	14669420	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	CDS	14669421	14669537	1	+	0	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	exon	14669421	14669537	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	intron	14669538	14669633	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	CDS	14669634	14669706	1	+	0	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	exon	14669634	14669706	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	intron	14669707	14669828	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	CDS	14669829	14669947	1	+	2	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	exon	14669829	14669947	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	intron	14669948	14670144	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	CDS	14670145	14670266	1	+	0	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	exon	14670145	14670266	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	intron	14670267	14670598	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	CDS	14670599	14670775	0.75	+	1	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	exon	14670599	14670775	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	intron	14670776	14670933	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	CDS	14670934	14671078	1	+	1	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	exon	14670934	14671078	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	intron	14671079	14671228	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	CDS	14671229	14671407	1	+	0	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	exon	14671229	14671407	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	intron	14671408	14671508	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	CDS	14671509	14671758	0.99	+	1	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	exon	14671509	14671758	.	+	.	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
Ledus.S4	AUGUSTUS	stop_codon	14671759	14671761	.	+	0	transcript_id "Ledus.S4G195400.t1"; gene_id "Ledus.S4G195400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4154.t1 is derived from g1590.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14982626	14989249	.	+	.	Ledus.S1G157500
Ledus.S1	AUGUSTUS	transcript	14982626	14989249	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	start_codon	14982626	14982628	.	+	0	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14982626	14982759	0.64	+	0	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14982626	14982759	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14982760	14982865	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14982866	14982969	1	+	1	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14982866	14982969	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14982970	14983039	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14983040	14983045	1	+	2	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14983040	14983045	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14983046	14983129	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14983130	14983322	1	+	2	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14983130	14983322	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14983323	14983407	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14983408	14983996	1	+	1	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14983408	14983996	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14983997	14984121	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14984122	14984373	0.99	+	0	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14984122	14984373	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14984374	14984472	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14984473	14984670	1	+	0	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14984473	14984670	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14984671	14984759	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14984760	14984834	1	+	0	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14984760	14984834	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14984835	14984936	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14984937	14987558	0.97	+	0	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14984937	14987558	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14987559	14987636	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14987637	14987962	0.89	+	0	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14987637	14987962	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14987963	14988052	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14988053	14988527	1	+	1	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14988053	14988527	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14988528	14988611	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14988612	14988800	0.95	+	0	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14988612	14988800	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14988801	14988901	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14988902	14989068	0.64	+	0	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14988902	14989068	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	intron	14989069	14989152	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	CDS	14989153	14989249	0.47	+	1	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	exon	14989153	14989249	.	+	.	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
Ledus.S1	AUGUSTUS	stop_codon	14989250	14989252	.	+	0	transcript_id "Ledus.S1G157500.t1"; gene_id "Ledus.S1G157500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3562.t1 is derived from g998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9606060	9608895	.	-	.	Ledus.S1G098300
Ledus.S1	AUGUSTUS	transcript	9606060	9608895	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	stop_codon	9606057	9606059	.	-	0	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	CDS	9606060	9606180	1	-	1	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	exon	9606060	9606180	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	intron	9606181	9606272	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	CDS	9606273	9606391	1	-	0	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	exon	9606273	9606391	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	intron	9606392	9606483	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	CDS	9606484	9606579	1	-	0	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	exon	9606484	9606579	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	intron	9606580	9606712	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	CDS	9606713	9606820	1	-	0	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	exon	9606713	9606820	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	intron	9606821	9606922	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	CDS	9606923	9607009	1	-	0	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	exon	9606923	9607009	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	intron	9607010	9607168	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	CDS	9607169	9607372	0.99	-	0	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	exon	9607169	9607372	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	intron	9607373	9607479	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	CDS	9607480	9607539	1	-	0	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	exon	9607480	9607539	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	intron	9607540	9607656	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	CDS	9607657	9607825	1	-	1	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	exon	9607657	9607825	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	intron	9607826	9607949	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	CDS	9607950	9608023	1	-	0	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	exon	9607950	9608023	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	intron	9608024	9608110	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	CDS	9608111	9608214	1	-	2	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	exon	9608111	9608214	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	intron	9608215	9608447	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	CDS	9608448	9608895	0.94	-	0	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	exon	9608448	9608895	.	-	.	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
Ledus.S1	AUGUSTUS	start_codon	9608893	9608895	.	-	0	transcript_id "Ledus.S1G098300.t1"; gene_id "Ledus.S1G098300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8092.t1 is derived from g12763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9109842	9111265	.	+	.	Ledus.S5G087000
Ledus.S5	AUGUSTUS	transcript	9109842	9111265	.	+	.	transcript_id "Ledus.S5G087000.t1"; gene_id "Ledus.S5G087000"
Ledus.S5	AUGUSTUS	start_codon	9109842	9109844	.	+	0	transcript_id "Ledus.S5G087000.t1"; gene_id "Ledus.S5G087000"
Ledus.S5	AUGUSTUS	CDS	9109842	9110078	0.86	+	0	transcript_id "Ledus.S5G087000.t1"; gene_id "Ledus.S5G087000"
Ledus.S5	AUGUSTUS	exon	9109842	9110078	.	+	.	transcript_id "Ledus.S5G087000.t1"; gene_id "Ledus.S5G087000"
Ledus.S5	AUGUSTUS	intron	9110079	9111010	.	+	.	transcript_id "Ledus.S5G087000.t1"; gene_id "Ledus.S5G087000"
Ledus.S5	AUGUSTUS	CDS	9111011	9111265	1	+	0	transcript_id "Ledus.S5G087000.t1"; gene_id "Ledus.S5G087000"
Ledus.S5	AUGUSTUS	exon	9111011	9111265	.	+	.	transcript_id "Ledus.S5G087000.t1"; gene_id "Ledus.S5G087000"
Ledus.S5	AUGUSTUS	stop_codon	9111266	9111268	.	+	0	transcript_id "Ledus.S5G087000.t1"; gene_id "Ledus.S5G087000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg10741.t1 is derived from g11772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17426387	17428819	.	-	.	Ledus.S3G221800
Ledus.S3	AUGUSTUS	transcript	17426387	17428752	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	stop_codon	17426384	17426386	.	-	0	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17426387	17426748	0.95	-	2	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17426387	17426748	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17426749	17426850	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17426851	17426922	0.97	-	2	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17426851	17426922	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17426923	17427244	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427245	17427351	1	-	1	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427245	17427351	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427352	17427445	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427446	17427571	1	-	1	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427446	17427571	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427572	17427657	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427658	17427726	1	-	1	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427658	17427726	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427727	17427803	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427804	17427918	1	-	2	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427804	17427918	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427919	17428143	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428144	17428165	1	-	0	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428144	17428165	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428166	17428263	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428264	17428314	1	-	0	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428264	17428314	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428315	17428446	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428447	17428519	1	-	1	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428447	17428519	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428520	17428720	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428721	17428752	0.94	-	0	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428721	17428752	.	-	.	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	start_codon	17428750	17428752	.	-	0	transcript_id "Ledus.S3G221800.t1"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	transcript	17426387	17428752	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	stop_codon	17426384	17426386	.	-	0	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17426387	17426748	0.96	-	2	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17426387	17426748	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17426749	17426850	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17426851	17426922	0.99	-	2	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17426851	17426922	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17426923	17427244	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427245	17427351	1	-	1	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427245	17427351	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427352	17427432	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427433	17427445	0.46	-	2	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427433	17427445	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427446	17427541	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427542	17427571	0.82	-	2	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427542	17427571	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427572	17427657	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427658	17427710	1	-	1	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427658	17427710	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427711	17427803	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427804	17427918	1	-	2	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427804	17427918	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427919	17428143	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428144	17428165	1	-	0	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428144	17428165	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428166	17428263	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428264	17428314	1	-	0	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428264	17428314	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428315	17428446	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428447	17428519	1	-	1	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428447	17428519	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428520	17428720	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428721	17428752	0.93	-	0	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428721	17428752	.	-	.	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	start_codon	17428750	17428752	.	-	0	transcript_id "Ledus.S3G221800.t2"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	transcript	17426387	17428752	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	stop_codon	17426384	17426386	.	-	0	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17426387	17426748	0.96	-	2	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17426387	17426748	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17426749	17426850	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17426851	17426922	1	-	2	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17426851	17426922	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17426923	17427244	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427245	17427351	1	-	1	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427245	17427351	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427352	17427445	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427446	17427475	0.55	-	1	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427446	17427475	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427476	17427555	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427556	17427571	0.55	-	2	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427556	17427571	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427572	17427657	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427658	17427710	0.56	-	1	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427658	17427710	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427711	17427803	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427804	17427918	1	-	2	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427804	17427918	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427919	17428066	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428067	17428081	0.87	-	2	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428067	17428081	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428082	17428143	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428144	17428165	0.87	-	0	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428144	17428165	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428166	17428263	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428264	17428314	1	-	0	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428264	17428314	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428315	17428446	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428447	17428519	1	-	1	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428447	17428519	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428520	17428720	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428721	17428752	0.91	-	0	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428721	17428752	.	-	.	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	start_codon	17428750	17428752	.	-	0	transcript_id "Ledus.S3G221800.t3"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	transcript	17426387	17428819	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	stop_codon	17426384	17426386	.	-	0	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17426387	17426748	0.94	-	2	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17426387	17426748	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17426749	17426850	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17426851	17426922	0.95	-	2	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17426851	17426922	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17426923	17427244	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427245	17427351	1	-	1	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427245	17427351	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427352	17427445	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427446	17427475	0.51	-	1	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427446	17427475	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427476	17427555	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427556	17427571	0.51	-	2	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427556	17427571	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427572	17427657	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427658	17427710	0.52	-	1	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427658	17427710	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427711	17427803	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17427804	17427918	1	-	2	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17427804	17427918	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17427919	17428143	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428144	17428165	1	-	0	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428144	17428165	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428166	17428263	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428264	17428314	1	-	0	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428264	17428314	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428315	17428446	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428447	17428519	1	-	1	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428447	17428519	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	intron	17428520	17428691	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	CDS	17428692	17428819	1	-	0	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	exon	17428692	17428819	.	-	.	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
Ledus.S3	AUGUSTUS	start_codon	17428817	17428819	.	-	0	transcript_id "Ledus.S3G221800.t4"; gene_id "Ledus.S3G221800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8526.t1 is derived from g9556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	38594	39640	.	+	.	Ledus.S3G000300
Ledus.S3	AUGUSTUS	transcript	38594	39640	.	+	.	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	start_codon	38594	38596	.	+	0	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	CDS	38594	38791	0.79	+	0	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	exon	38594	38791	.	+	.	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	intron	38792	38880	.	+	.	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	CDS	38881	39080	1	+	0	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	exon	38881	39080	.	+	.	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	intron	39081	39166	.	+	.	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	CDS	39167	39449	1	+	1	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	exon	39167	39449	.	+	.	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	intron	39450	39535	.	+	.	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	CDS	39536	39640	1	+	0	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	exon	39536	39640	.	+	.	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
Ledus.S3	AUGUSTUS	stop_codon	39641	39643	.	+	0	transcript_id "Ledus.S3G000300.t1"; gene_id "Ledus.S3G000300"
# This transcript jg10777.t2 is derived from g11809.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10778.t1 is derived from g11810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17603732	17606490	.	+	.	Ledus.S3G225500
Ledus.S3	AUGUSTUS	transcript	17603732	17606490	.	+	.	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	start_codon	17603732	17603734	.	+	0	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	CDS	17603732	17603953	0.87	+	0	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	exon	17603732	17603953	.	+	.	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	intron	17603954	17604129	.	+	.	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	CDS	17604130	17604646	0.93	+	0	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	exon	17604130	17604646	.	+	.	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	intron	17604647	17604734	.	+	.	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	CDS	17604735	17605403	0.79	+	2	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	exon	17604735	17605403	.	+	.	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	intron	17605404	17606479	.	+	.	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	CDS	17606480	17606490	1	+	2	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	exon	17606480	17606490	.	+	.	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
Ledus.S3	AUGUSTUS	stop_codon	17606491	17606493	.	+	0	transcript_id "Ledus.S3G225500.t1"; gene_id "Ledus.S3G225500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3384.t1 is derived from g819.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7982129	7986242	.	-	.	Ledus.S1G080500
Ledus.S1	AUGUSTUS	transcript	7982129	7986242	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	stop_codon	7982126	7982128	.	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	CDS	7982129	7982746	0.99	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	exon	7982129	7982746	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	intron	7982747	7982828	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	CDS	7982829	7982915	1	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	exon	7982829	7982915	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	intron	7982916	7982995	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	CDS	7982996	7983124	1	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	exon	7982996	7983124	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	intron	7983125	7983233	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	CDS	7983234	7983320	1	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	exon	7983234	7983320	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	intron	7983321	7983403	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	CDS	7983404	7983523	1	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	exon	7983404	7983523	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	intron	7983524	7983660	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	CDS	7983661	7984065	0.39	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	exon	7983661	7984065	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	intron	7984066	7984170	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	CDS	7984171	7984328	0.81	-	2	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	exon	7984171	7984328	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	intron	7984329	7984429	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	CDS	7984430	7984499	0.98	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	exon	7984430	7984499	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	intron	7984500	7984577	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	CDS	7984578	7984649	1	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	exon	7984578	7984649	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	intron	7984650	7984752	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	CDS	7984753	7984866	0.99	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	exon	7984753	7984866	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	intron	7984867	7985023	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	CDS	7985024	7985386	1	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	exon	7985024	7985386	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	intron	7985387	7985471	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	CDS	7985472	7986242	0.85	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	exon	7985472	7986242	.	-	.	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
Ledus.S1	AUGUSTUS	start_codon	7986240	7986242	.	-	0	transcript_id "Ledus.S1G080500.t1"; gene_id "Ledus.S1G080500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9168.t1 is derived from g10198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5202271	5204328	.	-	.	Ledus.S3G064500
Ledus.S3	AUGUSTUS	transcript	5202271	5204328	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	stop_codon	5202268	5202270	.	-	0	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	CDS	5202271	5202396	1	-	0	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	exon	5202271	5202396	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	intron	5202397	5202483	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	CDS	5202484	5202615	1	-	0	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	exon	5202484	5202615	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	intron	5202616	5202692	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	CDS	5202693	5202782	1	-	0	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	exon	5202693	5202782	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	intron	5202783	5202892	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	CDS	5202893	5203002	1	-	2	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	exon	5202893	5203002	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	intron	5203003	5203088	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	CDS	5203089	5203164	1	-	0	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	exon	5203089	5203164	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	intron	5203165	5203310	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	CDS	5203311	5203373	1	-	0	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	exon	5203311	5203373	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	intron	5203374	5203466	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	CDS	5203467	5203527	1	-	1	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	exon	5203467	5203527	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	intron	5203528	5203660	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	CDS	5203661	5203864	1	-	1	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	exon	5203661	5203864	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	intron	5203865	5203939	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	CDS	5203940	5204328	0.96	-	0	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	exon	5203940	5204328	.	-	.	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
Ledus.S3	AUGUSTUS	start_codon	5204326	5204328	.	-	0	transcript_id "Ledus.S3G064500.t1"; gene_id "Ledus.S3G064500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7279.t1 is derived from g11950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	721296	724861	.	-	.	Ledus.S5G005700
Ledus.S5	AUGUSTUS	transcript	721296	724861	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	stop_codon	721293	721295	.	-	0	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	CDS	721296	721660	0.64	-	2	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	exon	721296	721660	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	intron	721661	721825	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	CDS	721826	722180	0.92	-	0	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	exon	721826	722180	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	intron	722181	722287	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	CDS	722288	722354	1	-	1	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	exon	722288	722354	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	intron	722355	723000	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	CDS	723001	723557	0.95	-	0	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	exon	723001	723557	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	intron	723558	723683	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	CDS	723684	723765	1	-	1	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	exon	723684	723765	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	intron	723766	723890	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	CDS	723891	723936	1	-	2	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	exon	723891	723936	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	intron	723937	724039	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	CDS	724040	724091	0.99	-	0	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	exon	724040	724091	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	intron	724092	724669	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	CDS	724670	724861	0.8	-	0	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	exon	724670	724861	.	-	.	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
Ledus.S5	AUGUSTUS	start_codon	724859	724861	.	-	0	transcript_id "Ledus.S5G005700.t1"; gene_id "Ledus.S5G005700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3201.t1 is derived from g636.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6801422	6801966	.	-	.	Ledus.S1G062200
Ledus.S1	AUGUSTUS	transcript	6801422	6801966	.	-	.	transcript_id "Ledus.S1G062200.t1"; gene_id "Ledus.S1G062200"
Ledus.S1	AUGUSTUS	stop_codon	6801419	6801421	.	-	0	transcript_id "Ledus.S1G062200.t1"; gene_id "Ledus.S1G062200"
Ledus.S1	AUGUSTUS	CDS	6801422	6801459	0.75	-	2	transcript_id "Ledus.S1G062200.t1"; gene_id "Ledus.S1G062200"
Ledus.S1	AUGUSTUS	exon	6801422	6801459	.	-	.	transcript_id "Ledus.S1G062200.t1"; gene_id "Ledus.S1G062200"
Ledus.S1	AUGUSTUS	intron	6801460	6801563	.	-	.	transcript_id "Ledus.S1G062200.t1"; gene_id "Ledus.S1G062200"
Ledus.S1	AUGUSTUS	CDS	6801564	6801966	0.66	-	0	transcript_id "Ledus.S1G062200.t1"; gene_id "Ledus.S1G062200"
Ledus.S1	AUGUSTUS	exon	6801564	6801966	.	-	.	transcript_id "Ledus.S1G062200.t1"; gene_id "Ledus.S1G062200"
Ledus.S1	AUGUSTUS	start_codon	6801964	6801966	.	-	0	transcript_id "Ledus.S1G062200.t1"; gene_id "Ledus.S1G062200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8263.t1 is derived from g12934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10281077	10283823	.	-	.	Ledus.S5G104100
Ledus.S5	AUGUSTUS	transcript	10281077	10283823	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	stop_codon	10281074	10281076	.	-	0	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10281077	10281142	0.79	-	0	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10281077	10281142	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	intron	10281143	10281346	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10281347	10281367	1	-	0	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10281347	10281367	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	intron	10281368	10281492	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10281493	10281685	1	-	1	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10281493	10281685	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	intron	10281686	10281796	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10281797	10281840	0.99	-	0	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10281797	10281840	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	intron	10281841	10281935	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10281936	10282110	1	-	1	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10281936	10282110	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	intron	10282111	10282235	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10282236	10282294	1	-	0	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10282236	10282294	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	intron	10282295	10282376	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10282377	10282502	1	-	0	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10282377	10282502	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	intron	10282503	10282723	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10282724	10282785	0.99	-	2	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10282724	10282785	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	intron	10282786	10282895	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10282896	10282989	1	-	0	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10282896	10282989	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	intron	10282990	10283155	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10283156	10283248	1	-	0	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10283156	10283248	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	intron	10283249	10283359	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10283360	10283455	0.95	-	0	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10283360	10283455	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	intron	10283456	10283560	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10283561	10283604	0.91	-	2	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10283561	10283604	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	intron	10283605	10283750	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	CDS	10283751	10283823	0.66	-	0	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	exon	10283751	10283823	.	-	.	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
Ledus.S5	AUGUSTUS	start_codon	10283821	10283823	.	-	0	transcript_id "Ledus.S5G104100.t1"; gene_id "Ledus.S5G104100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1546.t1 is derived from g8407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10876084	10876713	.	-	.	Ledus.S2G142800
Ledus.S2	AUGUSTUS	transcript	10876084	10876713	.	-	.	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	stop_codon	10876081	10876083	.	-	0	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	CDS	10876084	10876156	0.94	-	1	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	exon	10876084	10876156	.	-	.	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	intron	10876157	10876244	.	-	.	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	CDS	10876245	10876255	0.48	-	0	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	exon	10876245	10876255	.	-	.	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	intron	10876256	10876308	.	-	.	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	CDS	10876309	10876314	0.55	-	0	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	exon	10876309	10876314	.	-	.	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	intron	10876315	10876403	.	-	.	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	CDS	10876404	10876511	0.55	-	0	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	exon	10876404	10876511	.	-	.	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	intron	10876512	10876602	.	-	.	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	CDS	10876603	10876713	0.49	-	0	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	exon	10876603	10876713	.	-	.	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
Ledus.S2	AUGUSTUS	start_codon	10876711	10876713	.	-	0	transcript_id "Ledus.S2G142800.t1"; gene_id "Ledus.S2G142800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3753.t1 is derived from g1189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11659986	11661640	.	-	.	Ledus.S1G117400
Ledus.S1	AUGUSTUS	transcript	11659986	11661640	.	-	.	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	stop_codon	11659983	11659985	.	-	0	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	CDS	11659986	11660126	0.99	-	0	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	exon	11659986	11660126	.	-	.	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	intron	11660127	11660311	.	-	.	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	CDS	11660312	11660416	1	-	0	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	exon	11660312	11660416	.	-	.	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	intron	11660417	11660863	.	-	.	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	CDS	11660864	11660991	1	-	2	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	exon	11660864	11660991	.	-	.	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	intron	11660992	11661134	.	-	.	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	CDS	11661135	11661242	1	-	2	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	exon	11661135	11661242	.	-	.	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	intron	11661243	11661570	.	-	.	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	CDS	11661571	11661640	0.97	-	0	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	exon	11661571	11661640	.	-	.	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	start_codon	11661638	11661640	.	-	0	transcript_id "Ledus.S1G117400.t1"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	transcript	11659986	11661493	.	-	.	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	stop_codon	11659983	11659985	.	-	0	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	CDS	11659986	11660126	1	-	0	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	exon	11659986	11660126	.	-	.	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	intron	11660127	11660311	.	-	.	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	CDS	11660312	11660416	1	-	0	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	exon	11660312	11660416	.	-	.	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	intron	11660417	11660863	.	-	.	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	CDS	11660864	11660991	1	-	2	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	exon	11660864	11660991	.	-	.	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	intron	11660992	11661134	.	-	.	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	CDS	11661135	11661242	1	-	2	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	exon	11661135	11661242	.	-	.	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	intron	11661243	11661486	.	-	.	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	CDS	11661487	11661493	0.47	-	0	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	exon	11661487	11661493	.	-	.	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
Ledus.S1	AUGUSTUS	start_codon	11661491	11661493	.	-	0	transcript_id "Ledus.S1G117400.t2"; gene_id "Ledus.S1G117400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1684.t1 is derived from g8545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11828209	11829486	.	+	.	Ledus.S2G156600
Ledus.S2	AUGUSTUS	transcript	11828209	11829486	.	+	.	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	start_codon	11828209	11828211	.	+	0	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	CDS	11828209	11828349	0.51	+	0	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	exon	11828209	11828349	.	+	.	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	intron	11828350	11828419	.	+	.	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	CDS	11828420	11828723	1	+	0	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	exon	11828420	11828723	.	+	.	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	intron	11828724	11828799	.	+	.	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	CDS	11828800	11828933	1	+	2	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	exon	11828800	11828933	.	+	.	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	intron	11828934	11829010	.	+	.	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	CDS	11829011	11829158	1	+	0	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	exon	11829011	11829158	.	+	.	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	intron	11829159	11829241	.	+	.	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	CDS	11829242	11829348	1	+	2	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	exon	11829242	11829348	.	+	.	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	intron	11829349	11829444	.	+	.	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	CDS	11829445	11829486	0.98	+	0	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	exon	11829445	11829486	.	+	.	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
Ledus.S2	AUGUSTUS	stop_codon	11829487	11829489	.	+	0	transcript_id "Ledus.S2G156600.t1"; gene_id "Ledus.S2G156600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9176.t1 is derived from g10206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5252981	5254305	.	+	.	Ledus.S3G065300
Ledus.S3	AUGUSTUS	transcript	5252981	5254305	.	+	.	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	start_codon	5252981	5252983	.	+	0	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	CDS	5252981	5253227	0.99	+	0	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	exon	5252981	5253227	.	+	.	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	intron	5253228	5253354	.	+	.	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	CDS	5253355	5253553	1	+	2	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	exon	5253355	5253553	.	+	.	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	intron	5253554	5253665	.	+	.	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	CDS	5253666	5253734	1	+	1	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	exon	5253666	5253734	.	+	.	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	intron	5253735	5253816	.	+	.	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	CDS	5253817	5253943	1	+	1	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	exon	5253817	5253943	.	+	.	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	intron	5253944	5254041	.	+	.	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	CDS	5254042	5254305	1	+	0	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	exon	5254042	5254305	.	+	.	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
Ledus.S3	AUGUSTUS	stop_codon	5254306	5254308	.	+	0	transcript_id "Ledus.S3G065300.t1"; gene_id "Ledus.S3G065300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4872.t1 is derived from g2310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20451606	20453142	.	-	.	Ledus.S1G229300
Ledus.S1	AUGUSTUS	transcript	20451606	20453142	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	stop_codon	20451603	20451605	.	-	0	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	CDS	20451606	20451738	1	-	1	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	exon	20451606	20451738	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	intron	20451739	20451817	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	CDS	20451818	20451843	0.62	-	0	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	exon	20451818	20451843	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	intron	20451844	20452021	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	CDS	20452022	20452038	0.82	-	2	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	exon	20452022	20452038	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	intron	20452039	20452123	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	CDS	20452124	20452322	1	-	0	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	exon	20452124	20452322	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	intron	20452323	20452405	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	CDS	20452406	20452555	0.98	-	0	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	exon	20452406	20452555	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	intron	20452556	20452680	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	CDS	20452681	20452822	0.97	-	1	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	exon	20452681	20452822	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	intron	20452823	20452898	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	CDS	20452899	20452978	1	-	0	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	exon	20452899	20452978	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	intron	20452979	20453079	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	CDS	20453080	20453142	0.99	-	0	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	exon	20453080	20453142	.	-	.	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
Ledus.S1	AUGUSTUS	start_codon	20453140	20453142	.	-	0	transcript_id "Ledus.S1G229300.t1"; gene_id "Ledus.S1G229300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8644.t1 is derived from g9674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1059945	1060774	.	-	.	Ledus.S3G012100
Ledus.S3	AUGUSTUS	transcript	1059945	1060774	.	-	.	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	stop_codon	1059942	1059944	.	-	0	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	CDS	1059945	1060109	0.74	-	0	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	exon	1059945	1060109	.	-	.	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	intron	1060110	1060197	.	-	.	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	CDS	1060198	1060258	1	-	1	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	exon	1060198	1060258	.	-	.	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	intron	1060259	1060349	.	-	.	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	CDS	1060350	1060518	1	-	2	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	exon	1060350	1060518	.	-	.	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	intron	1060519	1060608	.	-	.	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	CDS	1060609	1060774	0.94	-	0	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	exon	1060609	1060774	.	-	.	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
Ledus.S3	AUGUSTUS	start_codon	1060772	1060774	.	-	0	transcript_id "Ledus.S3G012100.t1"; gene_id "Ledus.S3G012100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9902.t1 is derived from g10932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11035095	11036507	.	+	.	Ledus.S3G137900
Ledus.S3	AUGUSTUS	transcript	11035095	11036507	.	+	.	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	start_codon	11035095	11035097	.	+	0	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	CDS	11035095	11035460	0.41	+	0	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	exon	11035095	11035460	.	+	.	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	intron	11035461	11035534	.	+	.	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	CDS	11035535	11035667	1	+	0	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	exon	11035535	11035667	.	+	.	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	intron	11035668	11035748	.	+	.	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	CDS	11035749	11035788	1	+	2	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	exon	11035749	11035788	.	+	.	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	intron	11035789	11035875	.	+	.	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	CDS	11035876	11035962	1	+	1	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	exon	11035876	11035962	.	+	.	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	intron	11035963	11036440	.	+	.	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	CDS	11036441	11036507	1	+	1	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	exon	11036441	11036507	.	+	.	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
Ledus.S3	AUGUSTUS	stop_codon	11036508	11036510	.	+	0	transcript_id "Ledus.S3G137900.t1"; gene_id "Ledus.S3G137900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5818.t1 is derived from g3260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27078824	27081718	.	-	.	Ledus.S1G323900
Ledus.S1	AUGUSTUS	transcript	27078824	27081718	.	-	.	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	stop_codon	27078821	27078823	.	-	0	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	CDS	27078824	27079738	1	-	0	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	exon	27078824	27079738	.	-	.	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	intron	27079739	27079846	.	-	.	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	CDS	27079847	27080323	0.98	-	0	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	exon	27079847	27080323	.	-	.	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	intron	27080324	27080410	.	-	.	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	CDS	27080411	27080535	1	-	2	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	exon	27080411	27080535	.	-	.	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	intron	27080536	27080733	.	-	.	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	CDS	27080734	27080982	1	-	2	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	exon	27080734	27080982	.	-	.	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	intron	27080983	27081258	.	-	.	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	CDS	27081259	27081534	0.97	-	2	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	exon	27081259	27081534	.	-	.	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	intron	27081535	27081651	.	-	.	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	CDS	27081652	27081718	0.92	-	0	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	exon	27081652	27081718	.	-	.	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
Ledus.S1	AUGUSTUS	start_codon	27081716	27081718	.	-	0	transcript_id "Ledus.S1G323900.t1"; gene_id "Ledus.S1G323900"
# This transcript jg3822.t2 is derived from g1258.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3823.t1 is derived from g1259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12754135	12757490	.	+	.	Ledus.S1G124400
Ledus.S1	AUGUSTUS	transcript	12754135	12757490	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	start_codon	12754135	12754137	.	+	0	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12754135	12754275	0.74	+	0	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12754135	12754275	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12754276	12754367	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12754368	12754673	1	+	0	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12754368	12754673	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12754674	12754770	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12754771	12754879	1	+	0	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12754771	12754879	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12754880	12755022	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12755023	12755116	1	+	2	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12755023	12755116	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12755117	12755365	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12755366	12755453	1	+	1	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12755366	12755453	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12755454	12755697	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12755698	12755781	1	+	0	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12755698	12755781	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12755782	12755941	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12755942	12756038	1	+	0	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12755942	12756038	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12756039	12756403	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12756404	12756491	1	+	2	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12756404	12756491	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12756492	12756675	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12756676	12756781	1	+	1	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12756676	12756781	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12756782	12756941	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12756942	12757034	1	+	0	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12756942	12757034	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12757035	12757115	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12757116	12757490	0.99	+	0	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12757116	12757490	.	+	.	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	stop_codon	12757491	12757493	.	+	0	transcript_id "Ledus.S1G124400.t1"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	transcript	12754135	12757490	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	start_codon	12754135	12754137	.	+	0	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12754135	12754275	0.79	+	0	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12754135	12754275	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12754276	12754367	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12754368	12754673	1	+	0	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12754368	12754673	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12754674	12754770	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12754771	12754879	1	+	0	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12754771	12754879	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12754880	12755022	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12755023	12755116	1	+	2	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12755023	12755116	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12755117	12755365	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12755366	12755453	1	+	1	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12755366	12755453	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12755454	12755697	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12755698	12755781	1	+	0	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12755698	12755781	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12755782	12755941	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12755942	12756063	0.83	+	0	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12755942	12756063	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12756064	12756197	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12756198	12756322	0.8	+	1	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12756198	12756322	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12756323	12756403	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12756404	12756491	1	+	2	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12756404	12756491	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12756492	12756675	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12756676	12756781	1	+	1	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12756676	12756781	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12756782	12756941	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12756942	12757034	1	+	0	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12756942	12757034	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	intron	12757035	12757115	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	CDS	12757116	12757490	0.99	+	0	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	exon	12757116	12757490	.	+	.	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
Ledus.S1	AUGUSTUS	stop_codon	12757491	12757493	.	+	0	transcript_id "Ledus.S1G124400.t2"; gene_id "Ledus.S1G124400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10175.t1 is derived from g11205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13448225	13450809	.	+	.	Ledus.S3G165200
Ledus.S3	AUGUSTUS	transcript	13448225	13450809	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	start_codon	13448225	13448227	.	+	0	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	CDS	13448225	13448757	0.67	+	0	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	exon	13448225	13448757	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	intron	13448758	13448863	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	CDS	13448864	13449040	1	+	1	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	exon	13448864	13449040	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	intron	13449041	13449153	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	CDS	13449154	13449303	0.97	+	1	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	exon	13449154	13449303	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	intron	13449304	13449464	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	CDS	13449465	13449673	0.95	+	1	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	exon	13449465	13449673	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	intron	13449674	13449838	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	CDS	13449839	13449992	1	+	2	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	exon	13449839	13449992	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	intron	13449993	13450078	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	CDS	13450079	13450430	0.99	+	1	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	exon	13450079	13450430	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	intron	13450431	13450542	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	CDS	13450543	13450809	1	+	0	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	exon	13450543	13450809	.	+	.	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
Ledus.S3	AUGUSTUS	stop_codon	13450810	13450812	.	+	0	transcript_id "Ledus.S3G165200.t1"; gene_id "Ledus.S3G165200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5239.t1 is derived from g2678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22634318	22634518	.	-	.	Ledus.S1G266000
Ledus.S1	AUGUSTUS	transcript	22634318	22634518	.	-	.	transcript_id "Ledus.S1G266000.t1"; gene_id "Ledus.S1G266000"
Ledus.S1	AUGUSTUS	stop_codon	22634315	22634317	.	-	0	transcript_id "Ledus.S1G266000.t1"; gene_id "Ledus.S1G266000"
Ledus.S1	AUGUSTUS	CDS	22634318	22634518	1	-	0	transcript_id "Ledus.S1G266000.t1"; gene_id "Ledus.S1G266000"
Ledus.S1	AUGUSTUS	exon	22634318	22634518	.	-	.	transcript_id "Ledus.S1G266000.t1"; gene_id "Ledus.S1G266000"
Ledus.S1	AUGUSTUS	start_codon	22634516	22634518	.	-	0	transcript_id "Ledus.S1G266000.t1"; gene_id "Ledus.S1G266000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg479.t1 is derived from g7340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2810661	2813612	.	+	.	Ledus.S2G036100
Ledus.S2	AUGUSTUS	transcript	2810661	2813612	.	+	.	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	start_codon	2810661	2810663	.	+	0	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	CDS	2810661	2811314	0.88	+	0	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	exon	2810661	2811314	.	+	.	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	intron	2811315	2811819	.	+	.	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	CDS	2811820	2811935	1	+	0	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	exon	2811820	2811935	.	+	.	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	intron	2811936	2812066	.	+	.	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	CDS	2812067	2812310	0.99	+	1	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	exon	2812067	2812310	.	+	.	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	intron	2812311	2812463	.	+	.	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	CDS	2812464	2812952	0.87	+	0	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	exon	2812464	2812952	.	+	.	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	intron	2812953	2813144	.	+	.	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	CDS	2813145	2813612	0.23	+	0	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	exon	2813145	2813612	.	+	.	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
Ledus.S2	AUGUSTUS	stop_codon	2813613	2813615	.	+	0	transcript_id "Ledus.S2G036100.t1"; gene_id "Ledus.S2G036100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11414.t1 is derived from g5032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4123278	4131186	.	+	.	Ledus.S4G057000
Ledus.S4	AUGUSTUS	transcript	4123278	4131186	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	start_codon	4123278	4123280	.	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4123278	4123500	0.99	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4123278	4123500	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4123501	4123635	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4123636	4123715	1	+	2	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4123636	4123715	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4123716	4123850	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4123851	4123943	1	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4123851	4123943	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4123944	4124075	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4124076	4124192	1	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4124076	4124192	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4124193	4124301	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4124302	4124489	1	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4124302	4124489	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4124490	4124714	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4124715	4124781	1	+	1	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4124715	4124781	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4124782	4124911	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4124912	4125034	1	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4124912	4125034	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4125035	4125229	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4125230	4125382	1	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4125230	4125382	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4125383	4125539	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4125540	4125824	1	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4125540	4125824	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4125825	4125927	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4125928	4126146	1	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4125928	4126146	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4126147	4126307	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4126308	4126401	0.86	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4126308	4126401	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4126402	4126510	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4126511	4126561	0.39	+	2	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4126511	4126561	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4126562	4127095	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4127096	4127182	0.3	+	2	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4127096	4127182	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4127183	4127328	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4127329	4127520	0.49	+	2	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4127329	4127520	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4127521	4127645	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4127646	4128556	0.95	+	2	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4127646	4128556	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4128557	4128661	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4128662	4128802	1	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4128662	4128802	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4128803	4128875	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4128876	4129367	1	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4128876	4129367	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4129368	4129457	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4129458	4129683	1	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4129458	4129683	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4129684	4129777	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4129778	4130062	1	+	2	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4129778	4130062	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4130063	4130139	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4130140	4130612	0.98	+	2	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4130140	4130612	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	intron	4130613	4130679	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	CDS	4130680	4131186	0.98	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	exon	4130680	4131186	.	+	.	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
Ledus.S4	AUGUSTUS	stop_codon	4131187	4131189	.	+	0	transcript_id "Ledus.S4G057000.t1"; gene_id "Ledus.S4G057000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13020.t1 is derived from g6830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3252907	3253179	.	-	.	Ledus.S6G008200
Ledus.S6	AUGUSTUS	transcript	3252907	3253179	.	-	.	transcript_id "Ledus.S6G008200.t1"; gene_id "Ledus.S6G008200"
Ledus.S6	AUGUSTUS	stop_codon	3252904	3252906	.	-	0	transcript_id "Ledus.S6G008200.t1"; gene_id "Ledus.S6G008200"
Ledus.S6	AUGUSTUS	CDS	3252907	3253179	0.61	-	0	transcript_id "Ledus.S6G008200.t1"; gene_id "Ledus.S6G008200"
Ledus.S6	AUGUSTUS	exon	3252907	3253179	.	-	.	transcript_id "Ledus.S6G008200.t1"; gene_id "Ledus.S6G008200"
Ledus.S6	AUGUSTUS	start_codon	3253177	3253179	.	-	0	transcript_id "Ledus.S6G008200.t1"; gene_id "Ledus.S6G008200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5853.t1 is derived from g3295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27324728	27328118	.	+	.	Ledus.S1G327400
Ledus.S1	AUGUSTUS	transcript	27324728	27328118	.	+	.	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	start_codon	27324728	27324730	.	+	0	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	CDS	27324728	27325099	1	+	0	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	exon	27324728	27325099	.	+	.	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	intron	27325100	27325228	.	+	.	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	CDS	27325229	27326107	0.89	+	0	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	exon	27325229	27326107	.	+	.	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	intron	27326108	27326195	.	+	.	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	CDS	27326196	27326648	0.99	+	0	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	exon	27326196	27326648	.	+	.	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	intron	27326649	27326881	.	+	.	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	CDS	27326882	27327071	0.99	+	0	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	exon	27326882	27327071	.	+	.	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	intron	27327072	27327180	.	+	.	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	CDS	27327181	27328118	0.92	+	2	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	exon	27327181	27328118	.	+	.	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
Ledus.S1	AUGUSTUS	stop_codon	27328119	27328121	.	+	0	transcript_id "Ledus.S1G327400.t1"; gene_id "Ledus.S1G327400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11440.t1 is derived from g5058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4329312	4333259	.	+	.	Ledus.S4G059600
Ledus.S4	AUGUSTUS	transcript	4329312	4333259	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	start_codon	4329312	4329314	.	+	0	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4329312	4330127	0.99	+	0	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4329312	4330127	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	intron	4330128	4330213	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4330214	4330276	1	+	0	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4330214	4330276	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	intron	4330277	4330451	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4330452	4330481	1	+	0	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4330452	4330481	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	intron	4330482	4330668	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4330669	4330742	1	+	0	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4330669	4330742	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	intron	4330743	4330909	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4330910	4330991	1	+	1	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4330910	4330991	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	intron	4330992	4331122	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4331123	4331196	1	+	0	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4331123	4331196	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	intron	4331197	4331313	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4331314	4331380	1	+	1	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4331314	4331380	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	intron	4331381	4331534	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4331535	4331627	1	+	0	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4331535	4331627	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	intron	4331628	4331810	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4331811	4332029	1	+	0	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4331811	4332029	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	intron	4332030	4332139	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4332140	4332190	1	+	0	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4332140	4332190	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	intron	4332191	4332416	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4332417	4332559	1	+	0	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4332417	4332559	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	intron	4332560	4332700	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4332701	4333097	1	+	1	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4332701	4333097	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	intron	4333098	4333196	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	CDS	4333197	4333259	0.87	+	0	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	exon	4333197	4333259	.	+	.	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
Ledus.S4	AUGUSTUS	stop_codon	4333260	4333262	.	+	0	transcript_id "Ledus.S4G059600.t1"; gene_id "Ledus.S4G059600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2973.t1 is derived from g408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5015354	5015758	.	-	.	Ledus.S1G039400
Ledus.S1	AUGUSTUS	transcript	5015354	5015758	.	-	.	transcript_id "Ledus.S1G039400.t1"; gene_id "Ledus.S1G039400"
Ledus.S1	AUGUSTUS	stop_codon	5015351	5015353	.	-	0	transcript_id "Ledus.S1G039400.t1"; gene_id "Ledus.S1G039400"
Ledus.S1	AUGUSTUS	CDS	5015354	5015758	0.59	-	0	transcript_id "Ledus.S1G039400.t1"; gene_id "Ledus.S1G039400"
Ledus.S1	AUGUSTUS	exon	5015354	5015758	.	-	.	transcript_id "Ledus.S1G039400.t1"; gene_id "Ledus.S1G039400"
Ledus.S1	AUGUSTUS	start_codon	5015756	5015758	.	-	0	transcript_id "Ledus.S1G039400.t1"; gene_id "Ledus.S1G039400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9291.t1 is derived from g10321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5813526	5813978	.	-	.	Ledus.S3G076800
Ledus.S3	AUGUSTUS	transcript	5813526	5813978	.	-	.	transcript_id "Ledus.S3G076800.t1"; gene_id "Ledus.S3G076800"
Ledus.S3	AUGUSTUS	stop_codon	5813523	5813525	.	-	0	transcript_id "Ledus.S3G076800.t1"; gene_id "Ledus.S3G076800"
Ledus.S3	AUGUSTUS	CDS	5813526	5813978	0.41	-	0	transcript_id "Ledus.S3G076800.t1"; gene_id "Ledus.S3G076800"
Ledus.S3	AUGUSTUS	exon	5813526	5813978	.	-	.	transcript_id "Ledus.S3G076800.t1"; gene_id "Ledus.S3G076800"
Ledus.S3	AUGUSTUS	start_codon	5813976	5813978	.	-	0	transcript_id "Ledus.S3G076800.t1"; gene_id "Ledus.S3G076800"
# This transcript jg2436.t2 is derived from g9299.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2437.t1 is derived from g9300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18109069	18110359	.	-	.	Ledus.S2G231900
Ledus.S2	AUGUSTUS	transcript	18109069	18110359	.	-	.	transcript_id "Ledus.S2G231900.t1"; gene_id "Ledus.S2G231900"
Ledus.S2	AUGUSTUS	stop_codon	18109066	18109068	.	-	0	transcript_id "Ledus.S2G231900.t1"; gene_id "Ledus.S2G231900"
Ledus.S2	AUGUSTUS	CDS	18109069	18109791	0.99	-	0	transcript_id "Ledus.S2G231900.t1"; gene_id "Ledus.S2G231900"
Ledus.S2	AUGUSTUS	exon	18109069	18109791	.	-	.	transcript_id "Ledus.S2G231900.t1"; gene_id "Ledus.S2G231900"
Ledus.S2	AUGUSTUS	intron	18109792	18109963	.	-	.	transcript_id "Ledus.S2G231900.t1"; gene_id "Ledus.S2G231900"
Ledus.S2	AUGUSTUS	CDS	18109964	18110146	0.93	-	0	transcript_id "Ledus.S2G231900.t1"; gene_id "Ledus.S2G231900"
Ledus.S2	AUGUSTUS	exon	18109964	18110146	.	-	.	transcript_id "Ledus.S2G231900.t1"; gene_id "Ledus.S2G231900"
Ledus.S2	AUGUSTUS	intron	18110147	18110236	.	-	.	transcript_id "Ledus.S2G231900.t1"; gene_id "Ledus.S2G231900"
Ledus.S2	AUGUSTUS	CDS	18110237	18110359	0.49	-	0	transcript_id "Ledus.S2G231900.t1"; gene_id "Ledus.S2G231900"
Ledus.S2	AUGUSTUS	exon	18110237	18110359	.	-	.	transcript_id "Ledus.S2G231900.t1"; gene_id "Ledus.S2G231900"
Ledus.S2	AUGUSTUS	start_codon	18110357	18110359	.	-	0	transcript_id "Ledus.S2G231900.t1"; gene_id "Ledus.S2G231900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9444.t1 is derived from g10474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6855188	6857075	.	+	.	Ledus.S3G092100
Ledus.S3	AUGUSTUS	transcript	6855188	6857075	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	start_codon	6855188	6855190	.	+	0	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	CDS	6855188	6855379	1	+	0	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	exon	6855188	6855379	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	intron	6855380	6855467	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	CDS	6855468	6855597	1	+	0	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	exon	6855468	6855597	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	intron	6855598	6855682	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	CDS	6855683	6855813	1	+	2	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	exon	6855683	6855813	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	intron	6855814	6855936	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	CDS	6855937	6856072	1	+	0	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	exon	6855937	6856072	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	intron	6856073	6856191	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	CDS	6856192	6856306	1	+	2	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	exon	6856192	6856306	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	intron	6856307	6856445	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	CDS	6856446	6856593	1	+	1	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	exon	6856446	6856593	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	intron	6856594	6856727	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	CDS	6856728	6857075	1	+	0	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	exon	6856728	6857075	.	+	.	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
Ledus.S3	AUGUSTUS	stop_codon	6857076	6857078	.	+	0	transcript_id "Ledus.S3G092100.t1"; gene_id "Ledus.S3G092100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12223.t1 is derived from g5842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10488135	10489196	.	+	.	Ledus.S4G137900
Ledus.S4	AUGUSTUS	transcript	10488135	10489196	.	+	.	transcript_id "Ledus.S4G137900.t1"; gene_id "Ledus.S4G137900"
Ledus.S4	AUGUSTUS	start_codon	10488135	10488137	.	+	0	transcript_id "Ledus.S4G137900.t1"; gene_id "Ledus.S4G137900"
Ledus.S4	AUGUSTUS	CDS	10488135	10489196	0.91	+	0	transcript_id "Ledus.S4G137900.t1"; gene_id "Ledus.S4G137900"
Ledus.S4	AUGUSTUS	exon	10488135	10489196	.	+	.	transcript_id "Ledus.S4G137900.t1"; gene_id "Ledus.S4G137900"
Ledus.S4	AUGUSTUS	stop_codon	10489197	10489199	.	+	0	transcript_id "Ledus.S4G137900.t1"; gene_id "Ledus.S4G137900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8543.t1 is derived from g9573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	106229	108199	.	+	.	Ledus.S3G002000
Ledus.S3	AUGUSTUS	transcript	106229	108199	.	+	.	transcript_id "Ledus.S3G002000.t1"; gene_id "Ledus.S3G002000"
Ledus.S3	AUGUSTUS	start_codon	106229	106231	.	+	0	transcript_id "Ledus.S3G002000.t1"; gene_id "Ledus.S3G002000"
Ledus.S3	AUGUSTUS	CDS	106229	108199	0.45	+	0	transcript_id "Ledus.S3G002000.t1"; gene_id "Ledus.S3G002000"
Ledus.S3	AUGUSTUS	exon	106229	108199	.	+	.	transcript_id "Ledus.S3G002000.t1"; gene_id "Ledus.S3G002000"
Ledus.S3	AUGUSTUS	stop_codon	108200	108202	.	+	0	transcript_id "Ledus.S3G002000.t1"; gene_id "Ledus.S3G002000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg489.t1 is derived from g7350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2853657	2854334	.	+	.	Ledus.S2G037100
Ledus.S2	AUGUSTUS	transcript	2853657	2854334	.	+	.	transcript_id "Ledus.S2G037100.t1"; gene_id "Ledus.S2G037100"
Ledus.S2	AUGUSTUS	start_codon	2853657	2853659	.	+	0	transcript_id "Ledus.S2G037100.t1"; gene_id "Ledus.S2G037100"
Ledus.S2	AUGUSTUS	CDS	2853657	2854334	0.97	+	0	transcript_id "Ledus.S2G037100.t1"; gene_id "Ledus.S2G037100"
Ledus.S2	AUGUSTUS	exon	2853657	2854334	.	+	.	transcript_id "Ledus.S2G037100.t1"; gene_id "Ledus.S2G037100"
Ledus.S2	AUGUSTUS	stop_codon	2854335	2854337	.	+	0	transcript_id "Ledus.S2G037100.t1"; gene_id "Ledus.S2G037100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5491.t1 is derived from g2930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24540141	24540929	.	-	.	Ledus.S1G291200
Ledus.S1	AUGUSTUS	transcript	24540141	24540929	.	-	.	transcript_id "Ledus.S1G291200.t1"; gene_id "Ledus.S1G291200"
Ledus.S1	AUGUSTUS	stop_codon	24540138	24540140	.	-	0	transcript_id "Ledus.S1G291200.t1"; gene_id "Ledus.S1G291200"
Ledus.S1	AUGUSTUS	CDS	24540141	24540448	1	-	2	transcript_id "Ledus.S1G291200.t1"; gene_id "Ledus.S1G291200"
Ledus.S1	AUGUSTUS	exon	24540141	24540448	.	-	.	transcript_id "Ledus.S1G291200.t1"; gene_id "Ledus.S1G291200"
Ledus.S1	AUGUSTUS	intron	24540449	24540648	.	-	.	transcript_id "Ledus.S1G291200.t1"; gene_id "Ledus.S1G291200"
Ledus.S1	AUGUSTUS	CDS	24540649	24540693	1	-	2	transcript_id "Ledus.S1G291200.t1"; gene_id "Ledus.S1G291200"
Ledus.S1	AUGUSTUS	exon	24540649	24540693	.	-	.	transcript_id "Ledus.S1G291200.t1"; gene_id "Ledus.S1G291200"
Ledus.S1	AUGUSTUS	intron	24540694	24540781	.	-	.	transcript_id "Ledus.S1G291200.t1"; gene_id "Ledus.S1G291200"
Ledus.S1	AUGUSTUS	CDS	24540782	24540929	0.72	-	0	transcript_id "Ledus.S1G291200.t1"; gene_id "Ledus.S1G291200"
Ledus.S1	AUGUSTUS	exon	24540782	24540929	.	-	.	transcript_id "Ledus.S1G291200.t1"; gene_id "Ledus.S1G291200"
Ledus.S1	AUGUSTUS	start_codon	24540927	24540929	.	-	0	transcript_id "Ledus.S1G291200.t1"; gene_id "Ledus.S1G291200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11444.t1 is derived from g5062.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4365773	4366309	.	+	.	Ledus.S4G060000
Ledus.S4	AUGUSTUS	transcript	4365773	4366309	.	+	.	transcript_id "Ledus.S4G060000.t1"; gene_id "Ledus.S4G060000"
Ledus.S4	AUGUSTUS	start_codon	4365773	4365775	.	+	0	transcript_id "Ledus.S4G060000.t1"; gene_id "Ledus.S4G060000"
Ledus.S4	AUGUSTUS	CDS	4365773	4366309	0.72	+	0	transcript_id "Ledus.S4G060000.t1"; gene_id "Ledus.S4G060000"
Ledus.S4	AUGUSTUS	exon	4365773	4366309	.	+	.	transcript_id "Ledus.S4G060000.t1"; gene_id "Ledus.S4G060000"
Ledus.S4	AUGUSTUS	stop_codon	4366310	4366312	.	+	0	transcript_id "Ledus.S4G060000.t1"; gene_id "Ledus.S4G060000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9695.t1 is derived from g10725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9090834	9091502	.	-	.	Ledus.S3G117200
Ledus.S3	AUGUSTUS	transcript	9090834	9091502	.	-	.	transcript_id "Ledus.S3G117200.t1"; gene_id "Ledus.S3G117200"
Ledus.S3	AUGUSTUS	stop_codon	9090831	9090833	.	-	0	transcript_id "Ledus.S3G117200.t1"; gene_id "Ledus.S3G117200"
Ledus.S3	AUGUSTUS	CDS	9090834	9091502	0.54	-	0	transcript_id "Ledus.S3G117200.t1"; gene_id "Ledus.S3G117200"
Ledus.S3	AUGUSTUS	exon	9090834	9091502	.	-	.	transcript_id "Ledus.S3G117200.t1"; gene_id "Ledus.S3G117200"
Ledus.S3	AUGUSTUS	start_codon	9091500	9091502	.	-	0	transcript_id "Ledus.S3G117200.t1"; gene_id "Ledus.S3G117200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg318.t1 is derived from g7179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1599052	1604074	.	-	.	Ledus.S2G020000
Ledus.S2	AUGUSTUS	transcript	1599052	1604074	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	stop_codon	1599049	1599051	.	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1599052	1599150	1	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1599052	1599150	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1599151	1599272	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1599273	1599464	1	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1599273	1599464	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1599465	1599564	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1599565	1599658	1	-	1	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1599565	1599658	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1599659	1599797	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1599798	1600168	0.58	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1599798	1600168	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1600169	1600278	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1600279	1600413	0.99	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1600279	1600413	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1600414	1600524	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1600525	1600563	1	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1600525	1600563	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1600564	1600739	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1600740	1600805	1	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1600740	1600805	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1600806	1600946	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1600947	1601042	1	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1600947	1601042	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1601043	1601313	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1601314	1601556	1	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1601314	1601556	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1601557	1601678	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1601679	1601799	1	-	1	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1601679	1601799	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1601800	1602038	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1602039	1602074	1	-	1	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1602039	1602074	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1602075	1602722	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1602723	1602820	1	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1602723	1602820	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1602821	1602920	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1602921	1603259	1	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1602921	1603259	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1603260	1603355	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1603356	1603442	1	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1603356	1603442	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1603443	1603526	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1603527	1603595	1	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1603527	1603595	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	intron	1603596	1603699	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	CDS	1603700	1604074	0.8	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	exon	1603700	1604074	.	-	.	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
Ledus.S2	AUGUSTUS	start_codon	1604072	1604074	.	-	0	transcript_id "Ledus.S2G020000.t1"; gene_id "Ledus.S2G020000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3068.t1 is derived from g503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5657710	5657922	.	-	.	Ledus.S1G048900
Ledus.S1	AUGUSTUS	transcript	5657710	5657922	.	-	.	transcript_id "Ledus.S1G048900.t1"; gene_id "Ledus.S1G048900"
Ledus.S1	AUGUSTUS	stop_codon	5657707	5657709	.	-	0	transcript_id "Ledus.S1G048900.t1"; gene_id "Ledus.S1G048900"
Ledus.S1	AUGUSTUS	CDS	5657710	5657922	0.66	-	0	transcript_id "Ledus.S1G048900.t1"; gene_id "Ledus.S1G048900"
Ledus.S1	AUGUSTUS	exon	5657710	5657922	.	-	.	transcript_id "Ledus.S1G048900.t1"; gene_id "Ledus.S1G048900"
Ledus.S1	AUGUSTUS	start_codon	5657920	5657922	.	-	0	transcript_id "Ledus.S1G048900.t1"; gene_id "Ledus.S1G048900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9911.t1 is derived from g10941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11119743	11124220	.	+	.	Ledus.S3G138800
Ledus.S3	AUGUSTUS	transcript	11119743	11124220	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	start_codon	11119743	11119745	.	+	0	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11119743	11120022	1	+	0	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11119743	11120022	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11120023	11121069	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11121070	11121401	0.98	+	2	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11121070	11121401	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11121402	11121512	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11121513	11121665	0.97	+	0	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11121513	11121665	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11121666	11121774	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11121775	11122046	1	+	0	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11121775	11122046	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11122047	11122131	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11122132	11122259	1	+	1	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11122132	11122259	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11122260	11122409	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11122410	11123114	0.99	+	2	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11122410	11123114	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11123115	11123234	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11123235	11123872	0.97	+	2	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11123235	11123872	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11123873	11123974	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11123975	11124220	0.98	+	0	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11123975	11124220	.	+	.	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	stop_codon	11124221	11124223	.	+	0	transcript_id "Ledus.S3G138800.t1"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	transcript	11120948	11124220	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	start_codon	11120948	11120950	.	+	0	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11120948	11120972	0.85	+	0	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11120948	11120972	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11120973	11121069	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11121070	11121401	0.98	+	2	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11121070	11121401	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11121402	11121512	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11121513	11121665	0.97	+	0	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11121513	11121665	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11121666	11121774	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11121775	11122046	1	+	0	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11121775	11122046	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11122047	11122131	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11122132	11122259	1	+	1	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11122132	11122259	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11122260	11122409	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11122410	11123114	1	+	2	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11122410	11123114	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11123115	11123234	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11123235	11123872	0.98	+	2	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11123235	11123872	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11123873	11123974	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11123975	11124220	0.99	+	0	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11123975	11124220	.	+	.	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	stop_codon	11124221	11124223	.	+	0	transcript_id "Ledus.S3G138800.t2"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	transcript	11119743	11120909	.	+	.	transcript_id "Ledus.S3G138800.t3"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	start_codon	11119743	11119745	.	+	0	transcript_id "Ledus.S3G138800.t3"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11119743	11120022	1	+	0	transcript_id "Ledus.S3G138800.t3"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11119743	11120022	.	+	.	transcript_id "Ledus.S3G138800.t3"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11120023	11120199	.	+	.	transcript_id "Ledus.S3G138800.t3"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11120200	11120267	1	+	2	transcript_id "Ledus.S3G138800.t3"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11120200	11120267	.	+	.	transcript_id "Ledus.S3G138800.t3"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	intron	11120268	11120873	.	+	.	transcript_id "Ledus.S3G138800.t3"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	CDS	11120874	11120909	0.86	+	0	transcript_id "Ledus.S3G138800.t3"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	exon	11120874	11120909	.	+	.	transcript_id "Ledus.S3G138800.t3"; gene_id "Ledus.S3G138800"
Ledus.S3	AUGUSTUS	stop_codon	11120910	11120912	.	+	0	transcript_id "Ledus.S3G138800.t3"; gene_id "Ledus.S3G138800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10260.t1 is derived from g11290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13884802	13885854	.	+	.	Ledus.S3G173700
Ledus.S3	AUGUSTUS	transcript	13884802	13885854	.	+	.	transcript_id "Ledus.S3G173700.t1"; gene_id "Ledus.S3G173700"
Ledus.S3	AUGUSTUS	start_codon	13884802	13884804	.	+	0	transcript_id "Ledus.S3G173700.t1"; gene_id "Ledus.S3G173700"
Ledus.S3	AUGUSTUS	CDS	13884802	13885854	0.73	+	0	transcript_id "Ledus.S3G173700.t1"; gene_id "Ledus.S3G173700"
Ledus.S3	AUGUSTUS	exon	13884802	13885854	.	+	.	transcript_id "Ledus.S3G173700.t1"; gene_id "Ledus.S3G173700"
Ledus.S3	AUGUSTUS	stop_codon	13885855	13885857	.	+	0	transcript_id "Ledus.S3G173700.t1"; gene_id "Ledus.S3G173700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2772.t1 is derived from g206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3425050	3426062	.	+	.	Ledus.S1G019300
Ledus.S1	AUGUSTUS	transcript	3425050	3426062	.	+	.	transcript_id "Ledus.S1G019300.t1"; gene_id "Ledus.S1G019300"
Ledus.S1	AUGUSTUS	start_codon	3425050	3425052	.	+	0	transcript_id "Ledus.S1G019300.t1"; gene_id "Ledus.S1G019300"
Ledus.S1	AUGUSTUS	CDS	3425050	3425224	0.96	+	0	transcript_id "Ledus.S1G019300.t1"; gene_id "Ledus.S1G019300"
Ledus.S1	AUGUSTUS	exon	3425050	3425224	.	+	.	transcript_id "Ledus.S1G019300.t1"; gene_id "Ledus.S1G019300"
Ledus.S1	AUGUSTUS	intron	3425225	3425283	.	+	.	transcript_id "Ledus.S1G019300.t1"; gene_id "Ledus.S1G019300"
Ledus.S1	AUGUSTUS	CDS	3425284	3426062	0.59	+	2	transcript_id "Ledus.S1G019300.t1"; gene_id "Ledus.S1G019300"
Ledus.S1	AUGUSTUS	exon	3425284	3426062	.	+	.	transcript_id "Ledus.S1G019300.t1"; gene_id "Ledus.S1G019300"
Ledus.S1	AUGUSTUS	stop_codon	3426063	3426065	.	+	0	transcript_id "Ledus.S1G019300.t1"; gene_id "Ledus.S1G019300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg904.t1 is derived from g7765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6050174	6052108	.	-	.	Ledus.S2G078600
Ledus.S2	AUGUSTUS	transcript	6051406	6052108	.	-	.	transcript_id "Ledus.S2G078600.t1"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	stop_codon	6051403	6051405	.	-	0	transcript_id "Ledus.S2G078600.t1"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	CDS	6051406	6051406	1	-	1	transcript_id "Ledus.S2G078600.t1"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	exon	6051406	6051406	.	-	.	transcript_id "Ledus.S2G078600.t1"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	intron	6051407	6051488	.	-	.	transcript_id "Ledus.S2G078600.t1"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	CDS	6051489	6052108	0.99	-	0	transcript_id "Ledus.S2G078600.t1"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	exon	6051489	6052108	.	-	.	transcript_id "Ledus.S2G078600.t1"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	start_codon	6052106	6052108	.	-	0	transcript_id "Ledus.S2G078600.t1"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	transcript	6050553	6052108	.	-	.	transcript_id "Ledus.S2G078600.t2"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	stop_codon	6050550	6050552	.	-	0	transcript_id "Ledus.S2G078600.t2"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	CDS	6050553	6050562	0.95	-	1	transcript_id "Ledus.S2G078600.t2"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	exon	6050553	6050562	.	-	.	transcript_id "Ledus.S2G078600.t2"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	intron	6050563	6050633	.	-	.	transcript_id "Ledus.S2G078600.t2"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	CDS	6050634	6052108	0.92	-	0	transcript_id "Ledus.S2G078600.t2"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	exon	6050634	6052108	.	-	.	transcript_id "Ledus.S2G078600.t2"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	start_codon	6052106	6052108	.	-	0	transcript_id "Ledus.S2G078600.t2"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	transcript	6050174	6052108	.	-	.	transcript_id "Ledus.S2G078600.t3"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	stop_codon	6050171	6050173	.	-	0	transcript_id "Ledus.S2G078600.t3"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	CDS	6050174	6052108	0.99	-	0	transcript_id "Ledus.S2G078600.t3"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	exon	6050174	6052108	.	-	.	transcript_id "Ledus.S2G078600.t3"; gene_id "Ledus.S2G078600"
Ledus.S2	AUGUSTUS	start_codon	6052106	6052108	.	-	0	transcript_id "Ledus.S2G078600.t3"; gene_id "Ledus.S2G078600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7338.t1 is derived from g12009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1257361	1259979	.	-	.	Ledus.S5G011600
Ledus.S5	AUGUSTUS	transcript	1257361	1259979	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	stop_codon	1257358	1257360	.	-	0	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	CDS	1257361	1257522	0.95	-	0	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	exon	1257361	1257522	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	intron	1257523	1257625	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	CDS	1257626	1257724	0.93	-	0	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	exon	1257626	1257724	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	intron	1257725	1257826	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	CDS	1257827	1258063	0.98	-	0	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	exon	1257827	1258063	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	intron	1258064	1258194	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	CDS	1258195	1258374	1	-	0	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	exon	1258195	1258374	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	intron	1258375	1258458	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	CDS	1258459	1258572	1	-	0	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	exon	1258459	1258572	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	intron	1258573	1258668	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	CDS	1258669	1258845	1	-	0	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	exon	1258669	1258845	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	intron	1258846	1258962	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	CDS	1258963	1259206	0.64	-	1	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	exon	1258963	1259206	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	intron	1259207	1259389	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	CDS	1259390	1259530	0.64	-	1	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	exon	1259390	1259530	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	intron	1259531	1259688	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	CDS	1259689	1259713	0.72	-	2	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	exon	1259689	1259713	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	intron	1259714	1259933	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	CDS	1259934	1259979	0.7	-	0	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	exon	1259934	1259979	.	-	.	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
Ledus.S5	AUGUSTUS	start_codon	1259977	1259979	.	-	0	transcript_id "Ledus.S5G011600.t1"; gene_id "Ledus.S5G011600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10349.t1 is derived from g11379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14358596	14359450	.	+	.	Ledus.S3G182600
Ledus.S3	AUGUSTUS	transcript	14358596	14359450	.	+	.	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	start_codon	14358596	14358598	.	+	0	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	CDS	14358596	14358624	0.94	+	0	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	exon	14358596	14358624	.	+	.	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	intron	14358625	14358904	.	+	.	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	CDS	14358905	14358940	1	+	1	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	exon	14358905	14358940	.	+	.	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	intron	14358941	14359030	.	+	.	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	CDS	14359031	14359259	0.99	+	1	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	exon	14359031	14359259	.	+	.	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	intron	14359260	14359411	.	+	.	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	CDS	14359412	14359450	1	+	0	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	exon	14359412	14359450	.	+	.	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
Ledus.S3	AUGUSTUS	stop_codon	14359451	14359453	.	+	0	transcript_id "Ledus.S3G182600.t1"; gene_id "Ledus.S3G182600"
# This transcript jg11053.t2 is derived from g4671.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11053.t3 is derived from g4671.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11054.t1 is derived from g4672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1496371	1497420	.	-	.	Ledus.S4G021000
Ledus.S4	AUGUSTUS	transcript	1496371	1497420	.	-	.	transcript_id "Ledus.S4G021000.t1"; gene_id "Ledus.S4G021000"
Ledus.S4	AUGUSTUS	stop_codon	1496368	1496370	.	-	0	transcript_id "Ledus.S4G021000.t1"; gene_id "Ledus.S4G021000"
Ledus.S4	AUGUSTUS	CDS	1496371	1496748	0.97	-	0	transcript_id "Ledus.S4G021000.t1"; gene_id "Ledus.S4G021000"
Ledus.S4	AUGUSTUS	exon	1496371	1496748	.	-	.	transcript_id "Ledus.S4G021000.t1"; gene_id "Ledus.S4G021000"
Ledus.S4	AUGUSTUS	intron	1496749	1496833	.	-	.	transcript_id "Ledus.S4G021000.t1"; gene_id "Ledus.S4G021000"
Ledus.S4	AUGUSTUS	CDS	1496834	1496992	1	-	0	transcript_id "Ledus.S4G021000.t1"; gene_id "Ledus.S4G021000"
Ledus.S4	AUGUSTUS	exon	1496834	1496992	.	-	.	transcript_id "Ledus.S4G021000.t1"; gene_id "Ledus.S4G021000"
Ledus.S4	AUGUSTUS	intron	1496993	1497120	.	-	.	transcript_id "Ledus.S4G021000.t1"; gene_id "Ledus.S4G021000"
Ledus.S4	AUGUSTUS	CDS	1497121	1497420	0.98	-	0	transcript_id "Ledus.S4G021000.t1"; gene_id "Ledus.S4G021000"
Ledus.S4	AUGUSTUS	exon	1497121	1497420	.	-	.	transcript_id "Ledus.S4G021000.t1"; gene_id "Ledus.S4G021000"
Ledus.S4	AUGUSTUS	start_codon	1497418	1497420	.	-	0	transcript_id "Ledus.S4G021000.t1"; gene_id "Ledus.S4G021000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6655.t1 is derived from g4098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32930704	32933370	.	+	.	Ledus.S1G407600
Ledus.S1	AUGUSTUS	transcript	32930704	32933370	.	+	.	transcript_id "Ledus.S1G407600.t1"; gene_id "Ledus.S1G407600"
Ledus.S1	AUGUSTUS	start_codon	32930704	32930706	.	+	0	transcript_id "Ledus.S1G407600.t1"; gene_id "Ledus.S1G407600"
Ledus.S1	AUGUSTUS	CDS	32930704	32930862	0.79	+	0	transcript_id "Ledus.S1G407600.t1"; gene_id "Ledus.S1G407600"
Ledus.S1	AUGUSTUS	exon	32930704	32930862	.	+	.	transcript_id "Ledus.S1G407600.t1"; gene_id "Ledus.S1G407600"
Ledus.S1	AUGUSTUS	intron	32930863	32930957	.	+	.	transcript_id "Ledus.S1G407600.t1"; gene_id "Ledus.S1G407600"
Ledus.S1	AUGUSTUS	CDS	32930958	32931959	0.8	+	0	transcript_id "Ledus.S1G407600.t1"; gene_id "Ledus.S1G407600"
Ledus.S1	AUGUSTUS	exon	32930958	32931959	.	+	.	transcript_id "Ledus.S1G407600.t1"; gene_id "Ledus.S1G407600"
Ledus.S1	AUGUSTUS	intron	32931960	32932080	.	+	.	transcript_id "Ledus.S1G407600.t1"; gene_id "Ledus.S1G407600"
Ledus.S1	AUGUSTUS	CDS	32932081	32933370	0.98	+	0	transcript_id "Ledus.S1G407600.t1"; gene_id "Ledus.S1G407600"
Ledus.S1	AUGUSTUS	exon	32932081	32933370	.	+	.	transcript_id "Ledus.S1G407600.t1"; gene_id "Ledus.S1G407600"
Ledus.S1	AUGUSTUS	stop_codon	32933371	32933373	.	+	0	transcript_id "Ledus.S1G407600.t1"; gene_id "Ledus.S1G407600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7721.t1 is derived from g12392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5567097	5567480	.	+	.	Ledus.S5G049900
Ledus.S5	AUGUSTUS	transcript	5567097	5567480	.	+	.	transcript_id "Ledus.S5G049900.t1"; gene_id "Ledus.S5G049900"
Ledus.S5	AUGUSTUS	start_codon	5567097	5567099	.	+	0	transcript_id "Ledus.S5G049900.t1"; gene_id "Ledus.S5G049900"
Ledus.S5	AUGUSTUS	CDS	5567097	5567480	0.81	+	0	transcript_id "Ledus.S5G049900.t1"; gene_id "Ledus.S5G049900"
Ledus.S5	AUGUSTUS	exon	5567097	5567480	.	+	.	transcript_id "Ledus.S5G049900.t1"; gene_id "Ledus.S5G049900"
Ledus.S5	AUGUSTUS	stop_codon	5567481	5567483	.	+	0	transcript_id "Ledus.S5G049900.t1"; gene_id "Ledus.S5G049900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8692.t1 is derived from g9722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1393259	1397232	.	+	.	Ledus.S3G016900
Ledus.S3	AUGUSTUS	transcript	1393259	1397232	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	start_codon	1393259	1393261	.	+	0	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	CDS	1393259	1394635	0.74	+	0	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	exon	1393259	1394635	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	intron	1394636	1394815	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	CDS	1394816	1394987	0.96	+	0	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	exon	1394816	1394987	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	intron	1394988	1395088	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	CDS	1395089	1395297	0.99	+	2	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	exon	1395089	1395297	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	intron	1395298	1395459	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	CDS	1395460	1395528	1	+	0	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	exon	1395460	1395528	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	intron	1395529	1395616	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	CDS	1395617	1395705	1	+	0	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	exon	1395617	1395705	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	intron	1395706	1395823	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	CDS	1395824	1395969	0.59	+	1	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	exon	1395824	1395969	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	intron	1395970	1396076	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	CDS	1396077	1396125	0.58	+	2	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	exon	1396077	1396125	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	intron	1396126	1396221	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	CDS	1396222	1396290	0.47	+	1	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	exon	1396222	1396290	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	intron	1396291	1396563	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	CDS	1396564	1396754	0.71	+	1	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	exon	1396564	1396754	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	intron	1396755	1396945	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	CDS	1396946	1397009	1	+	2	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	exon	1396946	1397009	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	intron	1397010	1397159	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	CDS	1397160	1397232	1	+	1	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	exon	1397160	1397232	.	+	.	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
Ledus.S3	AUGUSTUS	stop_codon	1397233	1397235	.	+	0	transcript_id "Ledus.S3G016900.t1"; gene_id "Ledus.S3G016900"
# This transcript jg8544.t2 is derived from g9574.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8545.t1 is derived from g9575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	114329	118985	.	-	.	Ledus.S3G002200
Ledus.S3	AUGUSTUS	transcript	114329	118985	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	stop_codon	114326	114328	.	-	0	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	114329	114415	1	-	0	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	114329	114415	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	intron	114416	114512	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	114513	114594	1	-	1	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	114513	114594	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	intron	114595	114706	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	114707	114807	1	-	0	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	114707	114807	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	intron	114808	114966	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	114967	115129	1	-	1	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	114967	115129	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	intron	115130	115216	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	115217	115473	1	-	0	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	115217	115473	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	intron	115474	115586	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	115587	116113	0.76	-	2	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	115587	116113	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	intron	116114	116213	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	116214	116384	1	-	2	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	116214	116384	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	intron	116385	116625	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	116626	116719	1	-	0	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	116626	116719	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	intron	116720	116835	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	116836	116958	1	-	0	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	116836	116958	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	intron	116959	117179	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	117180	117292	1	-	2	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	117180	117292	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	intron	117293	117551	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	117552	117897	1	-	0	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	117552	117897	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	intron	117898	118063	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	118064	118163	1	-	1	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	118064	118163	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	intron	118164	118356	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	CDS	118357	118985	0.69	-	0	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	exon	118357	118985	.	-	.	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
Ledus.S3	AUGUSTUS	start_codon	118983	118985	.	-	0	transcript_id "Ledus.S3G002200.t1"; gene_id "Ledus.S3G002200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9776.t1 is derived from g10806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9752304	9753652	.	+	.	Ledus.S3G125300
Ledus.S3	AUGUSTUS	transcript	9752304	9753652	.	+	.	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	start_codon	9752304	9752306	.	+	0	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	CDS	9752304	9752410	1	+	0	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	exon	9752304	9752410	.	+	.	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	intron	9752411	9752507	.	+	.	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	CDS	9752508	9752764	1	+	1	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	exon	9752508	9752764	.	+	.	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	intron	9752765	9752860	.	+	.	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	CDS	9752861	9753309	1	+	2	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	exon	9752861	9753309	.	+	.	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	intron	9753310	9753391	.	+	.	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	CDS	9753392	9753652	0.82	+	0	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	exon	9753392	9753652	.	+	.	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
Ledus.S3	AUGUSTUS	stop_codon	9753653	9753655	.	+	0	transcript_id "Ledus.S3G125300.t1"; gene_id "Ledus.S3G125300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12230.t1 is derived from g5850.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10523719	10524320	.	-	.	Ledus.S4G138600
Ledus.S4	AUGUSTUS	transcript	10523719	10524320	.	-	.	transcript_id "Ledus.S4G138600.t1"; gene_id "Ledus.S4G138600"
Ledus.S4	AUGUSTUS	stop_codon	10523716	10523718	.	-	0	transcript_id "Ledus.S4G138600.t1"; gene_id "Ledus.S4G138600"
Ledus.S4	AUGUSTUS	CDS	10523719	10523751	1	-	0	transcript_id "Ledus.S4G138600.t1"; gene_id "Ledus.S4G138600"
Ledus.S4	AUGUSTUS	exon	10523719	10523751	.	-	.	transcript_id "Ledus.S4G138600.t1"; gene_id "Ledus.S4G138600"
Ledus.S4	AUGUSTUS	intron	10523752	10523884	.	-	.	transcript_id "Ledus.S4G138600.t1"; gene_id "Ledus.S4G138600"
Ledus.S4	AUGUSTUS	CDS	10523885	10523929	0.96	-	0	transcript_id "Ledus.S4G138600.t1"; gene_id "Ledus.S4G138600"
Ledus.S4	AUGUSTUS	exon	10523885	10523929	.	-	.	transcript_id "Ledus.S4G138600.t1"; gene_id "Ledus.S4G138600"
Ledus.S4	AUGUSTUS	intron	10523930	10524026	.	-	.	transcript_id "Ledus.S4G138600.t1"; gene_id "Ledus.S4G138600"
Ledus.S4	AUGUSTUS	CDS	10524027	10524320	0.77	-	0	transcript_id "Ledus.S4G138600.t1"; gene_id "Ledus.S4G138600"
Ledus.S4	AUGUSTUS	exon	10524027	10524320	.	-	.	transcript_id "Ledus.S4G138600.t1"; gene_id "Ledus.S4G138600"
Ledus.S4	AUGUSTUS	start_codon	10524318	10524320	.	-	0	transcript_id "Ledus.S4G138600.t1"; gene_id "Ledus.S4G138600"
# This transcript jg4102.t2 is derived from g1538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4103.t1 is derived from g1539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14699207	14702300	.	+	.	Ledus.S1G152400
Ledus.S1	AUGUSTUS	transcript	14699207	14702300	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	start_codon	14699207	14699209	.	+	0	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14699207	14699209	0.99	+	0	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14699207	14699209	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	intron	14699210	14699295	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14699296	14699411	0.89	+	0	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14699296	14699411	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	intron	14699412	14699529	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14699530	14699602	0.63	+	1	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14699530	14699602	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	intron	14699603	14699702	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14699703	14699762	1	+	0	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14699703	14699762	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	intron	14699763	14699897	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14699898	14699930	1	+	0	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14699898	14699930	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	intron	14699931	14700018	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14700019	14700096	1	+	0	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14700019	14700096	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	intron	14700097	14700310	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14700311	14700354	1	+	0	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14700311	14700354	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	intron	14700355	14700458	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14700459	14700499	1	+	1	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14700459	14700499	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	intron	14700500	14701493	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14701494	14701576	0.98	+	2	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14701494	14701576	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	intron	14701577	14701685	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14701686	14701777	1	+	0	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14701686	14701777	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	intron	14701778	14701852	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14701853	14701925	1	+	1	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14701853	14701925	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	intron	14701926	14702011	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14702012	14702053	0.96	+	0	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14702012	14702053	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	intron	14702054	14702165	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	CDS	14702166	14702300	0.78	+	0	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	exon	14702166	14702300	.	+	.	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
Ledus.S1	AUGUSTUS	stop_codon	14702301	14702303	.	+	0	transcript_id "Ledus.S1G152400.t1"; gene_id "Ledus.S1G152400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg697.t1 is derived from g7558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4282194	4289085	.	-	.	Ledus.S2G057900
Ledus.S2	AUGUSTUS	transcript	4282194	4289085	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	stop_codon	4282191	4282193	.	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4282194	4282397	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4282194	4282397	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4282398	4282495	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4282496	4282582	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4282496	4282582	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4282583	4282708	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4282709	4283305	0.91	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4282709	4283305	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4283306	4283441	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4283442	4283526	1	-	1	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4283442	4283526	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4283527	4283608	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4283609	4283667	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4283609	4283667	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4283668	4283765	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4283766	4283819	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4283766	4283819	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4283820	4283996	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4283997	4284089	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4283997	4284089	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4284090	4284210	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4284211	4284318	0.98	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4284211	4284318	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4284319	4284431	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4284432	4284529	0.96	-	2	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4284432	4284529	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4284530	4284609	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4284610	4284715	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4284610	4284715	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4284716	4284848	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4284849	4284969	1	-	1	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4284849	4284969	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4284970	4285083	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4285084	4285134	1	-	1	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4285084	4285134	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4285135	4285304	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4285305	4285390	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4285305	4285390	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4285391	4285552	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4285553	4285588	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4285553	4285588	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4285589	4285738	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4285739	4285948	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4285739	4285948	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4285949	4286164	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4286165	4286353	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4286165	4286353	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4286354	4286575	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4286576	4286712	1	-	2	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4286576	4286712	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4286713	4286819	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4286820	4286991	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4286820	4286991	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4286992	4287072	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4287073	4287211	0.5	-	1	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4287073	4287211	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4287212	4287515	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4287516	4287559	0.56	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4287516	4287559	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4287560	4287679	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4287680	4287790	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4287680	4287790	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4287791	4287906	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4287907	4287993	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4287907	4287993	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4287994	4288256	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4288257	4288330	1	-	2	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4288257	4288330	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4288331	4288426	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4288427	4288520	1	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4288427	4288520	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4288521	4288611	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4288612	4288657	1	-	1	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4288612	4288657	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4288658	4288975	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4288976	4289085	0.87	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4288976	4289085	.	-	.	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	start_codon	4289083	4289085	.	-	0	transcript_id "Ledus.S2G057900.t1"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	transcript	4282194	4289085	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	stop_codon	4282191	4282193	.	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4282194	4282397	0.92	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4282194	4282397	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4282398	4282495	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4282496	4282582	1	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4282496	4282582	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4282583	4282708	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4282709	4283305	0.88	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4282709	4283305	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4283306	4283441	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4283442	4283526	1	-	1	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4283442	4283526	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4283527	4283608	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4283609	4283667	1	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4283609	4283667	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4283668	4283765	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4283766	4283819	1	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4283766	4283819	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4283820	4283996	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4283997	4284089	1	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4283997	4284089	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4284090	4284210	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4284211	4284318	0.97	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4284211	4284318	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4284319	4284431	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4284432	4284529	0.94	-	2	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4284432	4284529	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4284530	4284609	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4284610	4284715	1	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4284610	4284715	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4284716	4284848	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4284849	4284969	0.98	-	1	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4284849	4284969	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4284970	4285055	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4285056	4285134	0.6	-	2	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4285056	4285134	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4285135	4285374	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4285375	4285390	0.68	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4285375	4285390	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4285391	4285552	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4285553	4285588	1	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4285553	4285588	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4285589	4285738	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4285739	4285948	1	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4285739	4285948	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4285949	4286164	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4286165	4286353	1	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4286165	4286353	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4286354	4286575	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4286576	4286712	1	-	2	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4286576	4286712	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4286713	4286819	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4286820	4286991	0.99	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4286820	4286991	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4286992	4287072	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4287073	4287211	0.45	-	1	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4287073	4287211	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4287212	4287515	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4287516	4287559	0.5	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4287516	4287559	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4287560	4287679	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4287680	4287790	1	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4287680	4287790	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4287791	4287906	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4287907	4287993	1	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4287907	4287993	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4287994	4288256	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4288257	4288330	1	-	2	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4288257	4288330	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4288331	4288426	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4288427	4288520	1	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4288427	4288520	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4288521	4288611	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4288612	4288657	1	-	1	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4288612	4288657	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	intron	4288658	4288975	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	CDS	4288976	4289085	0.88	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	exon	4288976	4289085	.	-	.	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
Ledus.S2	AUGUSTUS	start_codon	4289083	4289085	.	-	0	transcript_id "Ledus.S2G057900.t2"; gene_id "Ledus.S2G057900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5450.t1 is derived from g2889.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24361013	24361578	.	-	.	Ledus.S1G287100
Ledus.S1	AUGUSTUS	transcript	24361024	24361578	.	-	.	transcript_id "Ledus.S1G287100.t1"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	stop_codon	24361021	24361023	.	-	0	transcript_id "Ledus.S1G287100.t1"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	CDS	24361024	24361048	1	-	1	transcript_id "Ledus.S1G287100.t1"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	exon	24361024	24361048	.	-	.	transcript_id "Ledus.S1G287100.t1"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	intron	24361049	24361122	.	-	.	transcript_id "Ledus.S1G287100.t1"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	CDS	24361123	24361273	1	-	2	transcript_id "Ledus.S1G287100.t1"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	exon	24361123	24361273	.	-	.	transcript_id "Ledus.S1G287100.t1"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	intron	24361274	24361490	.	-	.	transcript_id "Ledus.S1G287100.t1"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	CDS	24361491	24361578	0.84	-	0	transcript_id "Ledus.S1G287100.t1"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	exon	24361491	24361578	.	-	.	transcript_id "Ledus.S1G287100.t1"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	start_codon	24361576	24361578	.	-	0	transcript_id "Ledus.S1G287100.t1"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	transcript	24361013	24361578	.	-	.	transcript_id "Ledus.S1G287100.t2"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	stop_codon	24361010	24361012	.	-	0	transcript_id "Ledus.S1G287100.t2"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	CDS	24361013	24361048	0.61	-	0	transcript_id "Ledus.S1G287100.t2"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	exon	24361013	24361048	.	-	.	transcript_id "Ledus.S1G287100.t2"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	intron	24361049	24361122	.	-	.	transcript_id "Ledus.S1G287100.t2"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	CDS	24361123	24361223	0.56	-	2	transcript_id "Ledus.S1G287100.t2"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	exon	24361123	24361223	.	-	.	transcript_id "Ledus.S1G287100.t2"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	intron	24361224	24361490	.	-	.	transcript_id "Ledus.S1G287100.t2"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	CDS	24361491	24361578	0.76	-	0	transcript_id "Ledus.S1G287100.t2"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	exon	24361491	24361578	.	-	.	transcript_id "Ledus.S1G287100.t2"; gene_id "Ledus.S1G287100"
Ledus.S1	AUGUSTUS	start_codon	24361576	24361578	.	-	0	transcript_id "Ledus.S1G287100.t2"; gene_id "Ledus.S1G287100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12571.t1 is derived from g6193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12916512	12918648	.	+	.	Ledus.S4G172700
Ledus.S4	AUGUSTUS	transcript	12916512	12918648	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	start_codon	12916512	12916514	.	+	0	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	CDS	12916512	12916868	0.47	+	0	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	exon	12916512	12916868	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	intron	12916869	12917368	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	CDS	12917369	12917456	1	+	0	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	exon	12917369	12917456	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	intron	12917457	12917570	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	CDS	12917571	12917635	1	+	2	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	exon	12917571	12917635	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	intron	12917636	12917758	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	CDS	12917759	12917807	1	+	0	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	exon	12917759	12917807	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	intron	12917808	12918007	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	CDS	12918008	12918060	1	+	2	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	exon	12918008	12918060	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	intron	12918061	12918190	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	CDS	12918191	12918306	1	+	0	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	exon	12918191	12918306	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	intron	12918307	12918398	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	CDS	12918399	12918456	1	+	1	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	exon	12918399	12918456	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	intron	12918457	12918558	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	CDS	12918559	12918648	0.59	+	0	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	exon	12918559	12918648	.	+	.	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
Ledus.S4	AUGUSTUS	stop_codon	12918649	12918651	.	+	0	transcript_id "Ledus.S4G172700.t1"; gene_id "Ledus.S4G172700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5222.t1 is derived from g2661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22551500	22552070	.	-	.	Ledus.S1G264300
Ledus.S1	AUGUSTUS	transcript	22551500	22552070	.	-	.	transcript_id "Ledus.S1G264300.t1"; gene_id "Ledus.S1G264300"
Ledus.S1	AUGUSTUS	stop_codon	22551497	22551499	.	-	0	transcript_id "Ledus.S1G264300.t1"; gene_id "Ledus.S1G264300"
Ledus.S1	AUGUSTUS	CDS	22551500	22551608	0.54	-	1	transcript_id "Ledus.S1G264300.t1"; gene_id "Ledus.S1G264300"
Ledus.S1	AUGUSTUS	exon	22551500	22551608	.	-	.	transcript_id "Ledus.S1G264300.t1"; gene_id "Ledus.S1G264300"
Ledus.S1	AUGUSTUS	intron	22551609	22551702	.	-	.	transcript_id "Ledus.S1G264300.t1"; gene_id "Ledus.S1G264300"
Ledus.S1	AUGUSTUS	CDS	22551703	22551839	0.83	-	0	transcript_id "Ledus.S1G264300.t1"; gene_id "Ledus.S1G264300"
Ledus.S1	AUGUSTUS	exon	22551703	22551839	.	-	.	transcript_id "Ledus.S1G264300.t1"; gene_id "Ledus.S1G264300"
Ledus.S1	AUGUSTUS	intron	22551840	22552019	.	-	.	transcript_id "Ledus.S1G264300.t1"; gene_id "Ledus.S1G264300"
Ledus.S1	AUGUSTUS	CDS	22552020	22552070	0.46	-	0	transcript_id "Ledus.S1G264300.t1"; gene_id "Ledus.S1G264300"
Ledus.S1	AUGUSTUS	exon	22552020	22552070	.	-	.	transcript_id "Ledus.S1G264300.t1"; gene_id "Ledus.S1G264300"
Ledus.S1	AUGUSTUS	start_codon	22552068	22552070	.	-	0	transcript_id "Ledus.S1G264300.t1"; gene_id "Ledus.S1G264300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2297.t1 is derived from g9160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17069330	17072712	.	-	.	Ledus.S2G217900
Ledus.S2	AUGUSTUS	transcript	17069330	17072712	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	stop_codon	17069327	17069329	.	-	0	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	CDS	17069330	17069856	1	-	2	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	exon	17069330	17069856	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	intron	17069857	17069979	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	CDS	17069980	17070196	1	-	0	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	exon	17069980	17070196	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	intron	17070197	17070286	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	CDS	17070287	17070406	1	-	0	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	exon	17070287	17070406	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	intron	17070407	17070485	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	CDS	17070486	17070623	1	-	0	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	exon	17070486	17070623	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	intron	17070624	17070753	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	CDS	17070754	17070864	0.99	-	0	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	exon	17070754	17070864	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	intron	17070865	17070973	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	CDS	17070974	17071048	0.99	-	0	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	exon	17070974	17071048	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	intron	17071049	17071215	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	CDS	17071216	17071346	1	-	2	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	exon	17071216	17071346	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	intron	17071347	17071646	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	CDS	17071647	17071840	1	-	1	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	exon	17071647	17071840	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	intron	17071841	17071992	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	CDS	17071993	17072084	1	-	0	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	exon	17071993	17072084	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	intron	17072085	17072187	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	CDS	17072188	17072292	1	-	0	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	exon	17072188	17072292	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	intron	17072293	17072375	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	CDS	17072376	17072453	1	-	0	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	exon	17072376	17072453	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	intron	17072454	17072571	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	CDS	17072572	17072712	0.43	-	0	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	exon	17072572	17072712	.	-	.	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
Ledus.S2	AUGUSTUS	start_codon	17072710	17072712	.	-	0	transcript_id "Ledus.S2G217900.t1"; gene_id "Ledus.S2G217900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12196.t1 is derived from g5815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10255388	10257262	.	+	.	Ledus.S4G135200
Ledus.S4	AUGUSTUS	transcript	10255388	10257262	.	+	.	transcript_id "Ledus.S4G135200.t1"; gene_id "Ledus.S4G135200"
Ledus.S4	AUGUSTUS	start_codon	10255388	10255390	.	+	0	transcript_id "Ledus.S4G135200.t1"; gene_id "Ledus.S4G135200"
Ledus.S4	AUGUSTUS	CDS	10255388	10257262	1	+	0	transcript_id "Ledus.S4G135200.t1"; gene_id "Ledus.S4G135200"
Ledus.S4	AUGUSTUS	exon	10255388	10257262	.	+	.	transcript_id "Ledus.S4G135200.t1"; gene_id "Ledus.S4G135200"
Ledus.S4	AUGUSTUS	stop_codon	10257263	10257265	.	+	0	transcript_id "Ledus.S4G135200.t1"; gene_id "Ledus.S4G135200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10524.t1 is derived from g11554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15910169	15910519	.	-	.	Ledus.S3G200100
Ledus.S3	AUGUSTUS	transcript	15910169	15910519	.	-	.	transcript_id "Ledus.S3G200100.t1"; gene_id "Ledus.S3G200100"
Ledus.S3	AUGUSTUS	stop_codon	15910166	15910168	.	-	0	transcript_id "Ledus.S3G200100.t1"; gene_id "Ledus.S3G200100"
Ledus.S3	AUGUSTUS	CDS	15910169	15910519	0.89	-	0	transcript_id "Ledus.S3G200100.t1"; gene_id "Ledus.S3G200100"
Ledus.S3	AUGUSTUS	exon	15910169	15910519	.	-	.	transcript_id "Ledus.S3G200100.t1"; gene_id "Ledus.S3G200100"
Ledus.S3	AUGUSTUS	start_codon	15910517	15910519	.	-	0	transcript_id "Ledus.S3G200100.t1"; gene_id "Ledus.S3G200100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12776.t1 is derived from g6398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14436582	14439181	.	+	.	Ledus.S4G193200
Ledus.S4	AUGUSTUS	transcript	14436582	14439181	.	+	.	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	start_codon	14436582	14436584	.	+	0	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	CDS	14436582	14436638	1	+	0	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	exon	14436582	14436638	.	+	.	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	intron	14436639	14437208	.	+	.	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	CDS	14437209	14437283	1	+	0	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	exon	14437209	14437283	.	+	.	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	intron	14437284	14437402	.	+	.	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	CDS	14437403	14437470	1	+	0	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	exon	14437403	14437470	.	+	.	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	intron	14437471	14437657	.	+	.	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	CDS	14437658	14438386	0.97	+	1	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	exon	14437658	14438386	.	+	.	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	intron	14438387	14438503	.	+	.	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	CDS	14438504	14438978	0.47	+	1	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	exon	14438504	14438978	.	+	.	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	intron	14438979	14439130	.	+	.	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	CDS	14439131	14439181	0.78	+	0	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	exon	14439131	14439181	.	+	.	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
Ledus.S4	AUGUSTUS	stop_codon	14439182	14439184	.	+	0	transcript_id "Ledus.S4G193200.t1"; gene_id "Ledus.S4G193200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg152.t1 is derived from g7013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	304770	308131	.	-	.	Ledus.S2G003400
Ledus.S2	AUGUSTUS	transcript	304770	308131	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	stop_codon	304767	304769	.	-	0	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	CDS	304770	305114	1	-	0	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	exon	304770	305114	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	intron	305115	305318	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	CDS	305319	305515	1	-	2	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	exon	305319	305515	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	intron	305516	305633	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	CDS	305634	305938	1	-	1	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	exon	305634	305938	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	intron	305939	306031	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	CDS	306032	306201	1	-	0	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	exon	306032	306201	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	intron	306202	306309	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	CDS	306310	306849	1	-	0	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	exon	306310	306849	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	intron	306850	306995	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	CDS	306996	307555	1	-	2	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	exon	306996	307555	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	intron	307556	307680	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	CDS	307681	308131	0.51	-	0	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	exon	307681	308131	.	-	.	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
Ledus.S2	AUGUSTUS	start_codon	308129	308131	.	-	0	transcript_id "Ledus.S2G003400.t1"; gene_id "Ledus.S2G003400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5984.t1 is derived from g3427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28162344	28163127	.	+	.	Ledus.S1G340500
Ledus.S1	AUGUSTUS	transcript	28162344	28163127	.	+	.	transcript_id "Ledus.S1G340500.t1"; gene_id "Ledus.S1G340500"
Ledus.S1	AUGUSTUS	start_codon	28162344	28162346	.	+	0	transcript_id "Ledus.S1G340500.t1"; gene_id "Ledus.S1G340500"
Ledus.S1	AUGUSTUS	CDS	28162344	28162742	0.43	+	0	transcript_id "Ledus.S1G340500.t1"; gene_id "Ledus.S1G340500"
Ledus.S1	AUGUSTUS	exon	28162344	28162742	.	+	.	transcript_id "Ledus.S1G340500.t1"; gene_id "Ledus.S1G340500"
Ledus.S1	AUGUSTUS	intron	28162743	28162899	.	+	.	transcript_id "Ledus.S1G340500.t1"; gene_id "Ledus.S1G340500"
Ledus.S1	AUGUSTUS	CDS	28162900	28163127	0.61	+	0	transcript_id "Ledus.S1G340500.t1"; gene_id "Ledus.S1G340500"
Ledus.S1	AUGUSTUS	exon	28162900	28163127	.	+	.	transcript_id "Ledus.S1G340500.t1"; gene_id "Ledus.S1G340500"
Ledus.S1	AUGUSTUS	stop_codon	28163128	28163130	.	+	0	transcript_id "Ledus.S1G340500.t1"; gene_id "Ledus.S1G340500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8765.t1 is derived from g9795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1882808	1884545	.	-	.	Ledus.S3G024200
Ledus.S3	AUGUSTUS	transcript	1882808	1884545	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	stop_codon	1882805	1882807	.	-	0	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	CDS	1882808	1883063	0.91	-	1	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	exon	1882808	1883063	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	intron	1883064	1883152	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	CDS	1883153	1883233	1	-	1	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	exon	1883153	1883233	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	intron	1883234	1883318	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	CDS	1883319	1883519	1	-	1	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	exon	1883319	1883519	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	intron	1883520	1883597	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	CDS	1883598	1883785	1	-	0	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	exon	1883598	1883785	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	intron	1883786	1883883	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	CDS	1883884	1884020	1	-	2	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	exon	1883884	1884020	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	intron	1884021	1884117	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	CDS	1884118	1884263	1	-	1	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	exon	1884118	1884263	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	intron	1884264	1884347	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	CDS	1884348	1884436	1	-	0	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	exon	1884348	1884436	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	intron	1884437	1884521	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	CDS	1884522	1884545	1	-	0	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	exon	1884522	1884545	.	-	.	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
Ledus.S3	AUGUSTUS	start_codon	1884543	1884545	.	-	0	transcript_id "Ledus.S3G024200.t1"; gene_id "Ledus.S3G024200"
# This transcript jg221.t2 is derived from g7082.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg222.t1 is derived from g7083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	965597	965908	.	+	.	Ledus.S2G010400
Ledus.S2	AUGUSTUS	transcript	965597	965908	.	+	.	transcript_id "Ledus.S2G010400.t1"; gene_id "Ledus.S2G010400"
Ledus.S2	AUGUSTUS	start_codon	965597	965599	.	+	0	transcript_id "Ledus.S2G010400.t1"; gene_id "Ledus.S2G010400"
Ledus.S2	AUGUSTUS	CDS	965597	965908	0.64	+	0	transcript_id "Ledus.S2G010400.t1"; gene_id "Ledus.S2G010400"
Ledus.S2	AUGUSTUS	exon	965597	965908	.	+	.	transcript_id "Ledus.S2G010400.t1"; gene_id "Ledus.S2G010400"
Ledus.S2	AUGUSTUS	stop_codon	965909	965911	.	+	0	transcript_id "Ledus.S2G010400.t1"; gene_id "Ledus.S2G010400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10890.t1 is derived from g4508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	332636	339073	.	+	.	Ledus.S4G004600
Ledus.S4	AUGUSTUS	transcript	332636	339073	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	start_codon	332636	332638	.	+	0	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	332636	332728	0.6	+	0	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	332636	332728	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	332729	332798	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	332799	332829	1	+	0	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	332799	332829	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	332830	332968	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	332969	333153	0.93	+	2	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	332969	333153	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	333154	333236	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	333237	335252	0.91	+	0	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	333237	335252	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	335253	335486	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	335487	335807	1	+	0	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	335487	335807	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	335808	335907	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	335908	335994	1	+	0	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	335908	335994	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	335995	336134	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	336135	336875	0.95	+	0	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	336135	336875	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	336876	337011	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	337012	337176	0.95	+	0	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	337012	337176	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	337177	337277	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	337278	337569	1	+	0	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	337278	337569	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	337570	337700	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	337701	337915	1	+	2	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	337701	337915	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	337916	338036	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	338037	338342	0.96	+	0	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	338037	338342	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	338343	338459	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	338460	338523	0.99	+	0	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	338460	338523	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	338524	338607	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	338608	338847	1	+	2	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	338608	338847	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	intron	338848	338930	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	CDS	338931	339073	1	+	2	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	exon	338931	339073	.	+	.	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
Ledus.S4	AUGUSTUS	stop_codon	339074	339076	.	+	0	transcript_id "Ledus.S4G004600.t1"; gene_id "Ledus.S4G004600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12120.t1 is derived from g5739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9641547	9642614	.	+	.	Ledus.S4G127600
Ledus.S4	AUGUSTUS	transcript	9641547	9642614	.	+	.	transcript_id "Ledus.S4G127600.t1"; gene_id "Ledus.S4G127600"
Ledus.S4	AUGUSTUS	start_codon	9641547	9641549	.	+	0	transcript_id "Ledus.S4G127600.t1"; gene_id "Ledus.S4G127600"
Ledus.S4	AUGUSTUS	CDS	9641547	9642614	0.97	+	0	transcript_id "Ledus.S4G127600.t1"; gene_id "Ledus.S4G127600"
Ledus.S4	AUGUSTUS	exon	9641547	9642614	.	+	.	transcript_id "Ledus.S4G127600.t1"; gene_id "Ledus.S4G127600"
Ledus.S4	AUGUSTUS	stop_codon	9642615	9642617	.	+	0	transcript_id "Ledus.S4G127600.t1"; gene_id "Ledus.S4G127600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg104.t1 is derived from g9517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	425710	428183	.	-	.	Ledus.C8G006400
Ledus.C8	AUGUSTUS	transcript	425710	427980	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	stop_codon	425707	425709	.	-	0	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	425710	425931	0.98	-	0	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	425710	425931	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	425932	426036	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	426037	426238	1	-	1	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	426037	426238	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	426239	426360	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	426361	426461	1	-	0	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	426361	426461	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	426462	426543	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	426544	426696	1	-	0	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	426544	426696	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	426697	426785	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	426786	426912	1	-	1	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	426786	426912	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	426913	427008	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427009	427112	1	-	0	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427009	427112	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427113	427195	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427196	427297	1	-	0	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427196	427297	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427298	427375	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427376	427519	1	-	0	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427376	427519	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427520	427618	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427619	427871	0.86	-	1	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427619	427871	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427872	427957	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427958	427980	0.82	-	0	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427958	427980	.	-	.	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	start_codon	427978	427980	.	-	0	transcript_id "Ledus.C8G006400.t1"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	transcript	425710	427993	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	stop_codon	425707	425709	.	-	0	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	425710	425931	0.98	-	0	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	425710	425931	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	425932	426036	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	426037	426238	1	-	1	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	426037	426238	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	426239	426360	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	426361	426461	1	-	0	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	426361	426461	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	426462	426543	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	426544	426696	1	-	0	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	426544	426696	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	426697	426785	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	426786	426912	1	-	1	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	426786	426912	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	426913	427008	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427009	427112	1	-	0	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427009	427112	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427113	427195	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427196	427297	1	-	0	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427196	427297	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427298	427375	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427376	427519	1	-	0	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427376	427519	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427520	427618	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427619	427864	0.99	-	0	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427619	427864	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427865	427957	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427958	427993	0.41	-	0	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427958	427993	.	-	.	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	start_codon	427991	427993	.	-	0	transcript_id "Ledus.C8G006400.t2"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	transcript	425710	428183	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	stop_codon	425707	425709	.	-	0	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	425710	425931	0.97	-	0	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	425710	425931	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	425932	426036	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	426037	426238	1	-	1	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	426037	426238	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	426239	426360	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	426361	426461	1	-	0	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	426361	426461	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	426462	426543	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	426544	426696	1	-	0	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	426544	426696	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	426697	426785	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	426786	426912	1	-	1	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	426786	426912	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	426913	427008	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427009	427112	1	-	0	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427009	427112	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427113	427195	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427196	427297	1	-	0	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427196	427297	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427298	427375	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427376	427519	1	-	0	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427376	427519	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427520	427618	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427619	427871	0.99	-	1	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427619	427871	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427872	427946	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	427947	427972	0.61	-	0	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	427947	427972	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	intron	427973	428102	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	CDS	428103	428183	0.43	-	0	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	exon	428103	428183	.	-	.	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
Ledus.C8	AUGUSTUS	start_codon	428181	428183	.	-	0	transcript_id "Ledus.C8G006400.t3"; gene_id "Ledus.C8G006400"
# This transcript jg1553.t2 is derived from g8414.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1553.t3 is derived from g8414.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1554.t1 is derived from g8415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10905319	10907420	.	+	.	Ledus.S2G143600
Ledus.S2	AUGUSTUS	transcript	10905319	10907420	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	start_codon	10905319	10905321	.	+	0	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	CDS	10905319	10905513	0.53	+	0	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	exon	10905319	10905513	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	intron	10905514	10905602	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	CDS	10905603	10905708	1	+	0	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	exon	10905603	10905708	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	intron	10905709	10905822	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	CDS	10905823	10906011	0.99	+	2	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	exon	10905823	10906011	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	intron	10906012	10906197	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	CDS	10906198	10906366	1	+	2	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	exon	10906198	10906366	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	intron	10906367	10906539	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	CDS	10906540	10906892	0.98	+	1	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	exon	10906540	10906892	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	intron	10906893	10907031	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	CDS	10907032	10907118	1	+	2	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	exon	10907032	10907118	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	intron	10907119	10907197	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	CDS	10907198	10907275	1	+	2	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	exon	10907198	10907275	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	intron	10907276	10907361	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	CDS	10907362	10907420	1	+	2	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	exon	10907362	10907420	.	+	.	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
Ledus.S2	AUGUSTUS	stop_codon	10907421	10907423	.	+	0	transcript_id "Ledus.S2G143600.t1"; gene_id "Ledus.S2G143600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5834.t1 is derived from g3276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27218334	27221469	.	+	.	Ledus.S1G325500
Ledus.S1	AUGUSTUS	transcript	27218334	27221469	.	+	.	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	start_codon	27218334	27218336	.	+	0	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	CDS	27218334	27218411	0.39	+	0	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	exon	27218334	27218411	.	+	.	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	intron	27218412	27218493	.	+	.	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	CDS	27218494	27218573	0.45	+	0	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	exon	27218494	27218573	.	+	.	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	intron	27218574	27218672	.	+	.	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	CDS	27218673	27218726	0.43	+	1	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	exon	27218673	27218726	.	+	.	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	intron	27218727	27218836	.	+	.	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	CDS	27218837	27218884	0.45	+	1	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	exon	27218837	27218884	.	+	.	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	intron	27218885	27218984	.	+	.	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	CDS	27218985	27221469	0.97	+	1	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	exon	27218985	27221469	.	+	.	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
Ledus.S1	AUGUSTUS	stop_codon	27221470	27221472	.	+	0	transcript_id "Ledus.S1G325500.t1"; gene_id "Ledus.S1G325500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1844.t1 is derived from g8707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12924988	12927239	.	+	.	Ledus.S2G172600
Ledus.S2	AUGUSTUS	transcript	12924988	12927239	.	+	.	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	start_codon	12924988	12924990	.	+	0	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	CDS	12924988	12925275	0.84	+	0	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	exon	12924988	12925275	.	+	.	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	intron	12925276	12925361	.	+	.	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	CDS	12925362	12926270	1	+	0	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	exon	12925362	12926270	.	+	.	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	intron	12926271	12926465	.	+	.	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	CDS	12926466	12926662	1	+	0	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	exon	12926466	12926662	.	+	.	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	intron	12926663	12926769	.	+	.	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	CDS	12926770	12926923	0.93	+	1	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	exon	12926770	12926923	.	+	.	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	intron	12926924	12927008	.	+	.	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	CDS	12927009	12927134	1	+	0	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	exon	12927009	12927134	.	+	.	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	intron	12927135	12927221	.	+	.	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	CDS	12927222	12927239	1	+	0	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	exon	12927222	12927239	.	+	.	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
Ledus.S2	AUGUSTUS	stop_codon	12927240	12927242	.	+	0	transcript_id "Ledus.S2G172600.t1"; gene_id "Ledus.S2G172600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5127.t1 is derived from g2566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21874540	21876496	.	-	.	Ledus.S1G254800
Ledus.S1	AUGUSTUS	transcript	21874540	21876496	.	-	.	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	stop_codon	21874537	21874539	.	-	0	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	CDS	21874540	21874771	0.42	-	1	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	exon	21874540	21874771	.	-	.	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	intron	21874772	21875397	.	-	.	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	CDS	21875398	21875699	0.46	-	0	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	exon	21875398	21875699	.	-	.	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	intron	21875700	21875820	.	-	.	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	CDS	21875821	21876121	0.63	-	1	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	exon	21875821	21876121	.	-	.	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	intron	21876122	21876196	.	-	.	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	CDS	21876197	21876306	0.86	-	0	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	exon	21876197	21876306	.	-	.	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	intron	21876307	21876403	.	-	.	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	CDS	21876404	21876496	0.46	-	0	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	exon	21876404	21876496	.	-	.	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
Ledus.S1	AUGUSTUS	start_codon	21876494	21876496	.	-	0	transcript_id "Ledus.S1G254800.t1"; gene_id "Ledus.S1G254800"
# This transcript jg8407.t2 is derived from g13079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8408.t1 is derived from g13080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11508858	11509085	.	-	.	Ledus.S5G118600
Ledus.S5	AUGUSTUS	transcript	11508858	11509085	.	-	.	transcript_id "Ledus.S5G118600.t1"; gene_id "Ledus.S5G118600"
Ledus.S5	AUGUSTUS	stop_codon	11508855	11508857	.	-	0	transcript_id "Ledus.S5G118600.t1"; gene_id "Ledus.S5G118600"
Ledus.S5	AUGUSTUS	CDS	11508858	11509085	0.7	-	0	transcript_id "Ledus.S5G118600.t1"; gene_id "Ledus.S5G118600"
Ledus.S5	AUGUSTUS	exon	11508858	11509085	.	-	.	transcript_id "Ledus.S5G118600.t1"; gene_id "Ledus.S5G118600"
Ledus.S5	AUGUSTUS	start_codon	11509083	11509085	.	-	0	transcript_id "Ledus.S5G118600.t1"; gene_id "Ledus.S5G118600"
# This transcript jg4394.t2 is derived from g1830.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4395.t1 is derived from g1831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16787187	16789795	.	-	.	Ledus.S1G181600
Ledus.S1	AUGUSTUS	transcript	16787187	16789795	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	stop_codon	16787184	16787186	.	-	0	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16787187	16787270	1	-	0	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16787187	16787270	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16787271	16787355	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16787356	16787552	0.91	-	2	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16787356	16787552	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16787553	16787632	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16787633	16787697	0.59	-	1	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16787633	16787697	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16787698	16787795	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16787796	16787943	1	-	2	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16787796	16787943	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16787944	16788033	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16788034	16788126	0.98	-	2	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16788034	16788126	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16788127	16788207	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16788208	16788370	0.4	-	0	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16788208	16788370	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16788371	16788481	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16788482	16788564	1	-	2	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16788482	16788564	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16788565	16788661	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16788662	16788745	1	-	2	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16788662	16788745	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16788746	16788838	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16788839	16788902	1	-	0	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16788839	16788902	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16788903	16788982	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16788983	16789039	1	-	0	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16788983	16789039	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16789040	16789134	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16789135	16789197	1	-	0	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16789135	16789197	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16789198	16789283	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16789284	16789322	1	-	0	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16789284	16789322	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16789323	16789397	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16789398	16789457	1	-	0	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16789398	16789457	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16789458	16789540	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16789541	16789598	1	-	1	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16789541	16789598	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	intron	16789599	16789697	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	CDS	16789698	16789795	0.76	-	0	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	exon	16789698	16789795	.	-	.	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
Ledus.S1	AUGUSTUS	start_codon	16789793	16789795	.	-	0	transcript_id "Ledus.S1G181600.t1"; gene_id "Ledus.S1G181600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7389.t1 is derived from g12060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2041751	2043559	.	+	.	Ledus.S5G016700
Ledus.S5	AUGUSTUS	transcript	2041751	2043559	.	+	.	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	start_codon	2041751	2041753	.	+	0	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	CDS	2041751	2041921	0.92	+	0	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	exon	2041751	2041921	.	+	.	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	intron	2041922	2042124	.	+	.	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	CDS	2042125	2042266	1	+	0	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	exon	2042125	2042266	.	+	.	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	intron	2042267	2042404	.	+	.	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	CDS	2042405	2042820	1	+	2	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	exon	2042405	2042820	.	+	.	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	intron	2042821	2042953	.	+	.	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	CDS	2042954	2043340	0.42	+	0	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	exon	2042954	2043340	.	+	.	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	intron	2043341	2043424	.	+	.	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	CDS	2043425	2043559	0.43	+	0	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	exon	2043425	2043559	.	+	.	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
Ledus.S5	AUGUSTUS	stop_codon	2043560	2043562	.	+	0	transcript_id "Ledus.S5G016700.t1"; gene_id "Ledus.S5G016700"
# This transcript jg3423.t2 is derived from g858.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3424.t1 is derived from g859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8246179	8246631	.	+	.	Ledus.S1G084500
Ledus.S1	AUGUSTUS	transcript	8246179	8246631	.	+	.	transcript_id "Ledus.S1G084500.t1"; gene_id "Ledus.S1G084500"
Ledus.S1	AUGUSTUS	start_codon	8246179	8246181	.	+	0	transcript_id "Ledus.S1G084500.t1"; gene_id "Ledus.S1G084500"
Ledus.S1	AUGUSTUS	CDS	8246179	8246631	0.72	+	0	transcript_id "Ledus.S1G084500.t1"; gene_id "Ledus.S1G084500"
Ledus.S1	AUGUSTUS	exon	8246179	8246631	.	+	.	transcript_id "Ledus.S1G084500.t1"; gene_id "Ledus.S1G084500"
Ledus.S1	AUGUSTUS	stop_codon	8246632	8246634	.	+	0	transcript_id "Ledus.S1G084500.t1"; gene_id "Ledus.S1G084500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11117.t1 is derived from g4735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1925417	1926487	.	-	.	Ledus.S4G027300
Ledus.S4	AUGUSTUS	transcript	1925417	1926487	.	-	.	transcript_id "Ledus.S4G027300.t1"; gene_id "Ledus.S4G027300"
Ledus.S4	AUGUSTUS	stop_codon	1925414	1925416	.	-	0	transcript_id "Ledus.S4G027300.t1"; gene_id "Ledus.S4G027300"
Ledus.S4	AUGUSTUS	CDS	1925417	1926487	0.91	-	0	transcript_id "Ledus.S4G027300.t1"; gene_id "Ledus.S4G027300"
Ledus.S4	AUGUSTUS	exon	1925417	1926487	.	-	.	transcript_id "Ledus.S4G027300.t1"; gene_id "Ledus.S4G027300"
Ledus.S4	AUGUSTUS	start_codon	1926485	1926487	.	-	0	transcript_id "Ledus.S4G027300.t1"; gene_id "Ledus.S4G027300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6168.t1 is derived from g3611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29365405	29368869	.	+	.	Ledus.S1G358900
Ledus.S1	AUGUSTUS	transcript	29365405	29368869	.	+	.	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	start_codon	29365405	29365407	.	+	0	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	CDS	29365405	29366102	0.96	+	0	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	exon	29365405	29366102	.	+	.	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	intron	29366103	29366390	.	+	.	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	CDS	29366391	29366562	0.68	+	1	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	exon	29366391	29366562	.	+	.	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	intron	29366563	29367214	.	+	.	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	CDS	29367215	29367281	0.94	+	0	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	exon	29367215	29367281	.	+	.	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	intron	29367282	29367446	.	+	.	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	CDS	29367447	29367488	1	+	2	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	exon	29367447	29367488	.	+	.	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	intron	29367489	29367574	.	+	.	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	CDS	29367575	29368869	0.54	+	2	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	exon	29367575	29368869	.	+	.	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
Ledus.S1	AUGUSTUS	stop_codon	29368870	29368872	.	+	0	transcript_id "Ledus.S1G358900.t1"; gene_id "Ledus.S1G358900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg407.t1 is derived from g7268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2241076	2246052	.	-	.	Ledus.S2G028900
Ledus.S2	AUGUSTUS	transcript	2241076	2246052	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	stop_codon	2241073	2241075	.	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2241076	2241169	1	-	1	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2241076	2241169	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2241170	2241252	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2241253	2241416	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2241253	2241416	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2241417	2241502	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2241503	2241685	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2241503	2241685	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2241686	2241807	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2241808	2241981	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2241808	2241981	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2241982	2242068	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2242069	2242229	1	-	2	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2242069	2242229	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2242230	2242351	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2242352	2242433	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2242352	2242433	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2242434	2242549	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2242550	2242582	0.94	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2242550	2242582	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2242583	2242669	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2242670	2242908	1	-	2	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2242670	2242908	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2242909	2243032	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2243033	2243194	1	-	2	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2243033	2243194	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2243195	2243317	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2243318	2243462	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2243318	2243462	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2243463	2243557	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2243558	2243662	0.98	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2243558	2243662	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2243663	2243773	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2243774	2243896	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2243774	2243896	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2243897	2243989	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2243990	2244109	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2243990	2244109	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2244110	2244211	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2244212	2244331	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2244212	2244331	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2244332	2244459	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2244460	2244666	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2244460	2244666	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2244667	2244792	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2244793	2244972	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2244793	2244972	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2244973	2245059	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2245060	2245194	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2245060	2245194	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2245195	2245305	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2245306	2245443	0.9	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2245306	2245443	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2245444	2245541	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2245542	2245640	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2245542	2245640	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2245641	2245727	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2245728	2245847	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2245728	2245847	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	intron	2245848	2245962	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	CDS	2245963	2246052	1	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	exon	2245963	2246052	.	-	.	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
Ledus.S2	AUGUSTUS	start_codon	2246050	2246052	.	-	0	transcript_id "Ledus.S2G028900.t1"; gene_id "Ledus.S2G028900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1077.t1 is derived from g7938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7302442	7303692	.	+	.	Ledus.S2G095900
Ledus.S2	AUGUSTUS	transcript	7302442	7303692	.	+	.	transcript_id "Ledus.S2G095900.t1"; gene_id "Ledus.S2G095900"
Ledus.S2	AUGUSTUS	start_codon	7302442	7302444	.	+	0	transcript_id "Ledus.S2G095900.t1"; gene_id "Ledus.S2G095900"
Ledus.S2	AUGUSTUS	CDS	7302442	7302822	0.72	+	0	transcript_id "Ledus.S2G095900.t1"; gene_id "Ledus.S2G095900"
Ledus.S2	AUGUSTUS	exon	7302442	7302822	.	+	.	transcript_id "Ledus.S2G095900.t1"; gene_id "Ledus.S2G095900"
Ledus.S2	AUGUSTUS	intron	7302823	7303053	.	+	.	transcript_id "Ledus.S2G095900.t1"; gene_id "Ledus.S2G095900"
Ledus.S2	AUGUSTUS	CDS	7303054	7303692	0.72	+	0	transcript_id "Ledus.S2G095900.t1"; gene_id "Ledus.S2G095900"
Ledus.S2	AUGUSTUS	exon	7303054	7303692	.	+	.	transcript_id "Ledus.S2G095900.t1"; gene_id "Ledus.S2G095900"
Ledus.S2	AUGUSTUS	stop_codon	7303693	7303695	.	+	0	transcript_id "Ledus.S2G095900.t1"; gene_id "Ledus.S2G095900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1421.t1 is derived from g8282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9975764	9977335	.	+	.	Ledus.S2G130300
Ledus.S2	AUGUSTUS	transcript	9975764	9977335	.	+	.	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	start_codon	9975764	9975766	.	+	0	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	CDS	9975764	9976454	1	+	0	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	exon	9975764	9976454	.	+	.	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	intron	9976455	9976562	.	+	.	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	CDS	9976563	9977104	0.52	+	2	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	exon	9976563	9977104	.	+	.	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	intron	9977105	9977213	.	+	.	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	CDS	9977214	9977232	0.78	+	0	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	exon	9977214	9977232	.	+	.	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	intron	9977233	9977324	.	+	.	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	CDS	9977325	9977335	0.77	+	2	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	exon	9977325	9977335	.	+	.	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
Ledus.S2	AUGUSTUS	stop_codon	9977336	9977338	.	+	0	transcript_id "Ledus.S2G130300.t1"; gene_id "Ledus.S2G130300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4015.t1 is derived from g1451.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14088056	14088701	.	-	.	Ledus.S1G143600
Ledus.S1	AUGUSTUS	transcript	14088056	14088701	.	-	.	transcript_id "Ledus.S1G143600.t1"; gene_id "Ledus.S1G143600"
Ledus.S1	AUGUSTUS	stop_codon	14088053	14088055	.	-	0	transcript_id "Ledus.S1G143600.t1"; gene_id "Ledus.S1G143600"
Ledus.S1	AUGUSTUS	CDS	14088056	14088067	1	-	0	transcript_id "Ledus.S1G143600.t1"; gene_id "Ledus.S1G143600"
Ledus.S1	AUGUSTUS	exon	14088056	14088067	.	-	.	transcript_id "Ledus.S1G143600.t1"; gene_id "Ledus.S1G143600"
Ledus.S1	AUGUSTUS	intron	14088068	14088248	.	-	.	transcript_id "Ledus.S1G143600.t1"; gene_id "Ledus.S1G143600"
Ledus.S1	AUGUSTUS	CDS	14088249	14088354	1	-	1	transcript_id "Ledus.S1G143600.t1"; gene_id "Ledus.S1G143600"
Ledus.S1	AUGUSTUS	exon	14088249	14088354	.	-	.	transcript_id "Ledus.S1G143600.t1"; gene_id "Ledus.S1G143600"
Ledus.S1	AUGUSTUS	intron	14088355	14088594	.	-	.	transcript_id "Ledus.S1G143600.t1"; gene_id "Ledus.S1G143600"
Ledus.S1	AUGUSTUS	CDS	14088595	14088701	1	-	0	transcript_id "Ledus.S1G143600.t1"; gene_id "Ledus.S1G143600"
Ledus.S1	AUGUSTUS	exon	14088595	14088701	.	-	.	transcript_id "Ledus.S1G143600.t1"; gene_id "Ledus.S1G143600"
Ledus.S1	AUGUSTUS	start_codon	14088699	14088701	.	-	0	transcript_id "Ledus.S1G143600.t1"; gene_id "Ledus.S1G143600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10407.t1 is derived from g11437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14925657	14925968	.	+	.	Ledus.S3G188400
Ledus.S3	AUGUSTUS	transcript	14925657	14925968	.	+	.	transcript_id "Ledus.S3G188400.t1"; gene_id "Ledus.S3G188400"
Ledus.S3	AUGUSTUS	start_codon	14925657	14925659	.	+	0	transcript_id "Ledus.S3G188400.t1"; gene_id "Ledus.S3G188400"
Ledus.S3	AUGUSTUS	CDS	14925657	14925968	0.24	+	0	transcript_id "Ledus.S3G188400.t1"; gene_id "Ledus.S3G188400"
Ledus.S3	AUGUSTUS	exon	14925657	14925968	.	+	.	transcript_id "Ledus.S3G188400.t1"; gene_id "Ledus.S3G188400"
Ledus.S3	AUGUSTUS	stop_codon	14925969	14925971	.	+	0	transcript_id "Ledus.S3G188400.t1"; gene_id "Ledus.S3G188400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6930.t1 is derived from g4374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35589398	35591014	.	-	.	Ledus.S1G435100
Ledus.S1	AUGUSTUS	transcript	35589398	35591014	.	-	.	transcript_id "Ledus.S1G435100.t1"; gene_id "Ledus.S1G435100"
Ledus.S1	AUGUSTUS	stop_codon	35589395	35589397	.	-	0	transcript_id "Ledus.S1G435100.t1"; gene_id "Ledus.S1G435100"
Ledus.S1	AUGUSTUS	CDS	35589398	35589568	0.5	-	0	transcript_id "Ledus.S1G435100.t1"; gene_id "Ledus.S1G435100"
Ledus.S1	AUGUSTUS	exon	35589398	35589568	.	-	.	transcript_id "Ledus.S1G435100.t1"; gene_id "Ledus.S1G435100"
Ledus.S1	AUGUSTUS	intron	35589569	35590413	.	-	.	transcript_id "Ledus.S1G435100.t1"; gene_id "Ledus.S1G435100"
Ledus.S1	AUGUSTUS	CDS	35590414	35590745	0.56	-	2	transcript_id "Ledus.S1G435100.t1"; gene_id "Ledus.S1G435100"
Ledus.S1	AUGUSTUS	exon	35590414	35590745	.	-	.	transcript_id "Ledus.S1G435100.t1"; gene_id "Ledus.S1G435100"
Ledus.S1	AUGUSTUS	intron	35590746	35590836	.	-	.	transcript_id "Ledus.S1G435100.t1"; gene_id "Ledus.S1G435100"
Ledus.S1	AUGUSTUS	CDS	35590837	35591014	0.55	-	0	transcript_id "Ledus.S1G435100.t1"; gene_id "Ledus.S1G435100"
Ledus.S1	AUGUSTUS	exon	35590837	35591014	.	-	.	transcript_id "Ledus.S1G435100.t1"; gene_id "Ledus.S1G435100"
Ledus.S1	AUGUSTUS	start_codon	35591012	35591014	.	-	0	transcript_id "Ledus.S1G435100.t1"; gene_id "Ledus.S1G435100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9309.t1 is derived from g10339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5963030	5964127	.	+	.	Ledus.S3G078600
Ledus.S3	AUGUSTUS	transcript	5963030	5964127	.	+	.	transcript_id "Ledus.S3G078600.t1"; gene_id "Ledus.S3G078600"
Ledus.S3	AUGUSTUS	start_codon	5963030	5963032	.	+	0	transcript_id "Ledus.S3G078600.t1"; gene_id "Ledus.S3G078600"
Ledus.S3	AUGUSTUS	CDS	5963030	5963138	0.76	+	0	transcript_id "Ledus.S3G078600.t1"; gene_id "Ledus.S3G078600"
Ledus.S3	AUGUSTUS	exon	5963030	5963138	.	+	.	transcript_id "Ledus.S3G078600.t1"; gene_id "Ledus.S3G078600"
Ledus.S3	AUGUSTUS	intron	5963139	5963274	.	+	.	transcript_id "Ledus.S3G078600.t1"; gene_id "Ledus.S3G078600"
Ledus.S3	AUGUSTUS	CDS	5963275	5963435	0.86	+	2	transcript_id "Ledus.S3G078600.t1"; gene_id "Ledus.S3G078600"
Ledus.S3	AUGUSTUS	exon	5963275	5963435	.	+	.	transcript_id "Ledus.S3G078600.t1"; gene_id "Ledus.S3G078600"
Ledus.S3	AUGUSTUS	intron	5963436	5963758	.	+	.	transcript_id "Ledus.S3G078600.t1"; gene_id "Ledus.S3G078600"
Ledus.S3	AUGUSTUS	CDS	5963759	5964127	0.11	+	0	transcript_id "Ledus.S3G078600.t1"; gene_id "Ledus.S3G078600"
Ledus.S3	AUGUSTUS	exon	5963759	5964127	.	+	.	transcript_id "Ledus.S3G078600.t1"; gene_id "Ledus.S3G078600"
Ledus.S3	AUGUSTUS	stop_codon	5964128	5964130	.	+	0	transcript_id "Ledus.S3G078600.t1"; gene_id "Ledus.S3G078600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12132.t1 is derived from g5751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9721837	9722151	.	+	.	Ledus.S4G128800
Ledus.S4	AUGUSTUS	transcript	9721837	9722151	.	+	.	transcript_id "Ledus.S4G128800.t1"; gene_id "Ledus.S4G128800"
Ledus.S4	AUGUSTUS	start_codon	9721837	9721839	.	+	0	transcript_id "Ledus.S4G128800.t1"; gene_id "Ledus.S4G128800"
Ledus.S4	AUGUSTUS	CDS	9721837	9722151	0.6	+	0	transcript_id "Ledus.S4G128800.t1"; gene_id "Ledus.S4G128800"
Ledus.S4	AUGUSTUS	exon	9721837	9722151	.	+	.	transcript_id "Ledus.S4G128800.t1"; gene_id "Ledus.S4G128800"
Ledus.S4	AUGUSTUS	stop_codon	9722152	9722154	.	+	0	transcript_id "Ledus.S4G128800.t1"; gene_id "Ledus.S4G128800"
# This transcript jg1677.t2 is derived from g8538.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1678.t1 is derived from g8539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11804728	11806899	.	-	.	Ledus.S2G156000
Ledus.S2	AUGUSTUS	transcript	11804728	11806899	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	stop_codon	11804725	11804727	.	-	0	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	CDS	11804728	11804859	1	-	0	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	exon	11804728	11804859	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	intron	11804860	11804957	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	CDS	11804958	11805029	1	-	0	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	exon	11804958	11805029	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	intron	11805030	11805112	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	CDS	11805113	11805179	1	-	1	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	exon	11805113	11805179	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	intron	11805180	11805299	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	CDS	11805300	11805370	1	-	0	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	exon	11805300	11805370	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	intron	11805371	11805459	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	CDS	11805460	11805511	1	-	1	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	exon	11805460	11805511	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	intron	11805512	11805790	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	CDS	11805791	11805855	1	-	0	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	exon	11805791	11805855	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	intron	11805856	11806023	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	CDS	11806024	11806073	1	-	2	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	exon	11806024	11806073	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	intron	11806074	11806214	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	CDS	11806215	11806291	1	-	1	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	exon	11806215	11806291	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	intron	11806292	11806410	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	CDS	11806411	11806630	1	-	2	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	exon	11806411	11806630	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	intron	11806631	11806712	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	CDS	11806713	11806899	0.87	-	0	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	exon	11806713	11806899	.	-	.	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
Ledus.S2	AUGUSTUS	start_codon	11806897	11806899	.	-	0	transcript_id "Ledus.S2G156000.t1"; gene_id "Ledus.S2G156000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12212.t1 is derived from g5831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10409373	10409813	.	+	.	Ledus.S4G136800
Ledus.S4	AUGUSTUS	transcript	10409373	10409813	.	+	.	transcript_id "Ledus.S4G136800.t1"; gene_id "Ledus.S4G136800"
Ledus.S4	AUGUSTUS	start_codon	10409373	10409375	.	+	0	transcript_id "Ledus.S4G136800.t1"; gene_id "Ledus.S4G136800"
Ledus.S4	AUGUSTUS	CDS	10409373	10409550	0.52	+	0	transcript_id "Ledus.S4G136800.t1"; gene_id "Ledus.S4G136800"
Ledus.S4	AUGUSTUS	exon	10409373	10409550	.	+	.	transcript_id "Ledus.S4G136800.t1"; gene_id "Ledus.S4G136800"
Ledus.S4	AUGUSTUS	intron	10409551	10409640	.	+	.	transcript_id "Ledus.S4G136800.t1"; gene_id "Ledus.S4G136800"
Ledus.S4	AUGUSTUS	CDS	10409641	10409813	0.48	+	2	transcript_id "Ledus.S4G136800.t1"; gene_id "Ledus.S4G136800"
Ledus.S4	AUGUSTUS	exon	10409641	10409813	.	+	.	transcript_id "Ledus.S4G136800.t1"; gene_id "Ledus.S4G136800"
Ledus.S4	AUGUSTUS	stop_codon	10409814	10409816	.	+	0	transcript_id "Ledus.S4G136800.t1"; gene_id "Ledus.S4G136800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7627.t1 is derived from g12298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4496195	4496407	.	+	.	Ledus.S5G040500
Ledus.S5	AUGUSTUS	transcript	4496195	4496407	.	+	.	transcript_id "Ledus.S5G040500.t1"; gene_id "Ledus.S5G040500"
Ledus.S5	AUGUSTUS	start_codon	4496195	4496197	.	+	0	transcript_id "Ledus.S5G040500.t1"; gene_id "Ledus.S5G040500"
Ledus.S5	AUGUSTUS	CDS	4496195	4496407	0.97	+	0	transcript_id "Ledus.S5G040500.t1"; gene_id "Ledus.S5G040500"
Ledus.S5	AUGUSTUS	exon	4496195	4496407	.	+	.	transcript_id "Ledus.S5G040500.t1"; gene_id "Ledus.S5G040500"
Ledus.S5	AUGUSTUS	stop_codon	4496408	4496410	.	+	0	transcript_id "Ledus.S5G040500.t1"; gene_id "Ledus.S5G040500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5415.t1 is derived from g2854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24039993	24042116	.	+	.	Ledus.S1G283600
Ledus.S1	AUGUSTUS	transcript	24040262	24042116	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	start_codon	24040262	24040264	.	+	0	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24040262	24040264	0.99	+	0	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24040262	24040264	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24040265	24040350	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24040351	24040498	1	+	0	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24040351	24040498	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24040499	24040616	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24040617	24040817	1	+	2	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24040617	24040817	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24040818	24040917	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24040918	24041143	1	+	2	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24040918	24041143	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24041144	24041211	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24041212	24041282	1	+	1	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24041212	24041282	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24041283	24041378	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24041379	24041439	0.75	+	2	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24041379	24041439	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24041440	24041547	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24041548	24041737	0.85	+	1	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24041548	24041737	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24041738	24041817	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24041818	24041926	1	+	0	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24041818	24041926	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24041927	24042015	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24042016	24042116	1	+	2	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24042016	24042116	.	+	.	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	stop_codon	24042117	24042119	.	+	0	transcript_id "Ledus.S1G283600.t1"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	transcript	24039993	24042116	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	start_codon	24039993	24039995	.	+	0	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24039993	24040019	0.99	+	0	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24039993	24040019	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24040020	24040350	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24040351	24040498	0.99	+	0	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24040351	24040498	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24040499	24040616	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24040617	24040817	0.99	+	2	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24040617	24040817	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24040818	24040917	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24040918	24041143	1	+	2	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24040918	24041143	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24041144	24041211	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24041212	24041282	1	+	1	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24041212	24041282	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24041283	24041378	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24041379	24041439	0.74	+	2	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24041379	24041439	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24041440	24041547	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24041548	24041737	0.79	+	1	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24041548	24041737	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24041738	24041817	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24041818	24041926	1	+	0	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24041818	24041926	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	intron	24041927	24042015	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	CDS	24042016	24042116	1	+	2	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	exon	24042016	24042116	.	+	.	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
Ledus.S1	AUGUSTUS	stop_codon	24042117	24042119	.	+	0	transcript_id "Ledus.S1G283600.t2"; gene_id "Ledus.S1G283600"
# This transcript jg2907.t2 is derived from g342.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2908.t1 is derived from g343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4520797	4523070	.	-	.	Ledus.S1G032900
Ledus.S1	AUGUSTUS	transcript	4520797	4523070	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	stop_codon	4520794	4520796	.	-	0	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	CDS	4520797	4520910	1	-	0	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	exon	4520797	4520910	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	intron	4520911	4520993	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	CDS	4520994	4521050	0.96	-	0	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	exon	4520994	4521050	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	intron	4521051	4521156	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	CDS	4521157	4521239	0.99	-	2	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	exon	4521157	4521239	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	intron	4521240	4521332	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	CDS	4521333	4521586	1	-	1	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	exon	4521333	4521586	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	intron	4521587	4521740	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	CDS	4521741	4521993	0.98	-	2	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	exon	4521741	4521993	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	intron	4521994	4522073	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	CDS	4522074	4522267	1	-	1	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	exon	4522074	4522267	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	intron	4522268	4522369	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	CDS	4522370	4522485	0.98	-	0	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	exon	4522370	4522485	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	intron	4522486	4522628	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	CDS	4522629	4522702	1	-	2	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	exon	4522629	4522702	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	intron	4522703	4522871	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	CDS	4522872	4523070	0.95	-	0	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	exon	4522872	4523070	.	-	.	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
Ledus.S1	AUGUSTUS	start_codon	4523068	4523070	.	-	0	transcript_id "Ledus.S1G032900.t1"; gene_id "Ledus.S1G032900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2387.t1 is derived from g9250.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17845586	17847223	.	-	.	Ledus.S2G226900
Ledus.S2	AUGUSTUS	transcript	17845586	17847223	.	-	.	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	stop_codon	17845583	17845585	.	-	0	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	CDS	17845586	17845604	1	-	1	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	exon	17845586	17845604	.	-	.	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	intron	17845605	17846173	.	-	.	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	CDS	17846174	17846280	1	-	0	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	exon	17846174	17846280	.	-	.	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	intron	17846281	17846360	.	-	.	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	CDS	17846361	17846432	1	-	0	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	exon	17846361	17846432	.	-	.	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	intron	17846433	17846614	.	-	.	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	CDS	17846615	17846646	1	-	2	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	exon	17846615	17846646	.	-	.	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	intron	17846647	17846980	.	-	.	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	CDS	17846981	17847056	0.37	-	0	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	exon	17846981	17847056	.	-	.	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	intron	17847057	17847211	.	-	.	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	CDS	17847212	17847223	0.7	-	0	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	exon	17847212	17847223	.	-	.	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
Ledus.S2	AUGUSTUS	start_codon	17847221	17847223	.	-	0	transcript_id "Ledus.S2G226900.t1"; gene_id "Ledus.S2G226900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3743.t1 is derived from g1179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11484640	11485068	.	-	.	Ledus.S1G116400
Ledus.S1	AUGUSTUS	transcript	11484640	11485068	.	-	.	transcript_id "Ledus.S1G116400.t1"; gene_id "Ledus.S1G116400"
Ledus.S1	AUGUSTUS	stop_codon	11484637	11484639	.	-	0	transcript_id "Ledus.S1G116400.t1"; gene_id "Ledus.S1G116400"
Ledus.S1	AUGUSTUS	CDS	11484640	11485068	0.89	-	0	transcript_id "Ledus.S1G116400.t1"; gene_id "Ledus.S1G116400"
Ledus.S1	AUGUSTUS	exon	11484640	11485068	.	-	.	transcript_id "Ledus.S1G116400.t1"; gene_id "Ledus.S1G116400"
Ledus.S1	AUGUSTUS	start_codon	11485066	11485068	.	-	0	transcript_id "Ledus.S1G116400.t1"; gene_id "Ledus.S1G116400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2110.t1 is derived from g8973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14780551	14783613	.	+	.	Ledus.S2G199200
Ledus.S2	AUGUSTUS	transcript	14780551	14783613	.	+	.	transcript_id "Ledus.S2G199200.t1"; gene_id "Ledus.S2G199200"
Ledus.S2	AUGUSTUS	start_codon	14780551	14780553	.	+	0	transcript_id "Ledus.S2G199200.t1"; gene_id "Ledus.S2G199200"
Ledus.S2	AUGUSTUS	CDS	14780551	14783613	0.84	+	0	transcript_id "Ledus.S2G199200.t1"; gene_id "Ledus.S2G199200"
Ledus.S2	AUGUSTUS	exon	14780551	14783613	.	+	.	transcript_id "Ledus.S2G199200.t1"; gene_id "Ledus.S2G199200"
Ledus.S2	AUGUSTUS	stop_codon	14783614	14783616	.	+	0	transcript_id "Ledus.S2G199200.t1"; gene_id "Ledus.S2G199200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2499.t1 is derived from g9362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18485150	18487780	.	+	.	Ledus.S2G238100
Ledus.S2	AUGUSTUS	transcript	18485150	18487780	.	+	.	transcript_id "Ledus.S2G238100.t1"; gene_id "Ledus.S2G238100"
Ledus.S2	AUGUSTUS	start_codon	18485150	18485152	.	+	0	transcript_id "Ledus.S2G238100.t1"; gene_id "Ledus.S2G238100"
Ledus.S2	AUGUSTUS	CDS	18485150	18487780	0.8	+	0	transcript_id "Ledus.S2G238100.t1"; gene_id "Ledus.S2G238100"
Ledus.S2	AUGUSTUS	exon	18485150	18487780	.	+	.	transcript_id "Ledus.S2G238100.t1"; gene_id "Ledus.S2G238100"
Ledus.S2	AUGUSTUS	stop_codon	18487781	18487783	.	+	0	transcript_id "Ledus.S2G238100.t1"; gene_id "Ledus.S2G238100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3211.t1 is derived from g646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6880451	6882106	.	-	.	Ledus.S1G063200
Ledus.S1	AUGUSTUS	transcript	6881530	6882106	.	-	.	transcript_id "Ledus.S1G063200.t1"; gene_id "Ledus.S1G063200"
Ledus.S1	AUGUSTUS	stop_codon	6881527	6881529	.	-	0	transcript_id "Ledus.S1G063200.t1"; gene_id "Ledus.S1G063200"
Ledus.S1	AUGUSTUS	CDS	6881530	6881539	0.97	-	1	transcript_id "Ledus.S1G063200.t1"; gene_id "Ledus.S1G063200"
Ledus.S1	AUGUSTUS	exon	6881530	6881539	.	-	.	transcript_id "Ledus.S1G063200.t1"; gene_id "Ledus.S1G063200"
Ledus.S1	AUGUSTUS	intron	6881540	6881582	.	-	.	transcript_id "Ledus.S1G063200.t1"; gene_id "Ledus.S1G063200"
Ledus.S1	AUGUSTUS	CDS	6881583	6882106	0.42	-	0	transcript_id "Ledus.S1G063200.t1"; gene_id "Ledus.S1G063200"
Ledus.S1	AUGUSTUS	exon	6881583	6882106	.	-	.	transcript_id "Ledus.S1G063200.t1"; gene_id "Ledus.S1G063200"
Ledus.S1	AUGUSTUS	start_codon	6882104	6882106	.	-	0	transcript_id "Ledus.S1G063200.t1"; gene_id "Ledus.S1G063200"
Ledus.S1	AUGUSTUS	transcript	6880451	6882106	.	-	.	transcript_id "Ledus.S1G063200.t2"; gene_id "Ledus.S1G063200"
Ledus.S1	AUGUSTUS	stop_codon	6880448	6880450	.	-	0	transcript_id "Ledus.S1G063200.t2"; gene_id "Ledus.S1G063200"
Ledus.S1	AUGUSTUS	CDS	6880451	6882106	0.4	-	0	transcript_id "Ledus.S1G063200.t2"; gene_id "Ledus.S1G063200"
Ledus.S1	AUGUSTUS	exon	6880451	6882106	.	-	.	transcript_id "Ledus.S1G063200.t2"; gene_id "Ledus.S1G063200"
Ledus.S1	AUGUSTUS	start_codon	6882104	6882106	.	-	0	transcript_id "Ledus.S1G063200.t2"; gene_id "Ledus.S1G063200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9007.t1 is derived from g10037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3848258	3849357	.	+	.	Ledus.S3G048400
Ledus.S3	AUGUSTUS	transcript	3848258	3849357	.	+	.	transcript_id "Ledus.S3G048400.t1"; gene_id "Ledus.S3G048400"
Ledus.S3	AUGUSTUS	start_codon	3848258	3848260	.	+	0	transcript_id "Ledus.S3G048400.t1"; gene_id "Ledus.S3G048400"
Ledus.S3	AUGUSTUS	CDS	3848258	3848800	0.98	+	0	transcript_id "Ledus.S3G048400.t1"; gene_id "Ledus.S3G048400"
Ledus.S3	AUGUSTUS	exon	3848258	3848800	.	+	.	transcript_id "Ledus.S3G048400.t1"; gene_id "Ledus.S3G048400"
Ledus.S3	AUGUSTUS	intron	3848801	3848883	.	+	.	transcript_id "Ledus.S3G048400.t1"; gene_id "Ledus.S3G048400"
Ledus.S3	AUGUSTUS	CDS	3848884	3849357	1	+	0	transcript_id "Ledus.S3G048400.t1"; gene_id "Ledus.S3G048400"
Ledus.S3	AUGUSTUS	exon	3848884	3849357	.	+	.	transcript_id "Ledus.S3G048400.t1"; gene_id "Ledus.S3G048400"
Ledus.S3	AUGUSTUS	stop_codon	3849358	3849360	.	+	0	transcript_id "Ledus.S3G048400.t1"; gene_id "Ledus.S3G048400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7290.t1 is derived from g11961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	789637	790440	.	+	.	Ledus.S5G006800
Ledus.S5	AUGUSTUS	transcript	789637	790440	.	+	.	transcript_id "Ledus.S5G006800.t1"; gene_id "Ledus.S5G006800"
Ledus.S5	AUGUSTUS	start_codon	789637	789639	.	+	0	transcript_id "Ledus.S5G006800.t1"; gene_id "Ledus.S5G006800"
Ledus.S5	AUGUSTUS	CDS	789637	790440	0.75	+	0	transcript_id "Ledus.S5G006800.t1"; gene_id "Ledus.S5G006800"
Ledus.S5	AUGUSTUS	exon	789637	790440	.	+	.	transcript_id "Ledus.S5G006800.t1"; gene_id "Ledus.S5G006800"
Ledus.S5	AUGUSTUS	stop_codon	790441	790443	.	+	0	transcript_id "Ledus.S5G006800.t1"; gene_id "Ledus.S5G006800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6547.t1 is derived from g3990.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32253310	32255934	.	+	.	Ledus.S1G396800
Ledus.S1	AUGUSTUS	transcript	32253310	32255934	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	start_codon	32253310	32253312	.	+	0	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	CDS	32253310	32253732	0.64	+	0	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	exon	32253310	32253732	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	intron	32253733	32253798	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	CDS	32253799	32253896	1	+	0	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	exon	32253799	32253896	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	intron	32253897	32253980	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	CDS	32253981	32254131	1	+	1	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	exon	32253981	32254131	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	intron	32254132	32254230	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	CDS	32254231	32254293	1	+	0	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	exon	32254231	32254293	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	intron	32254294	32254380	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	CDS	32254381	32254542	1	+	0	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	exon	32254381	32254542	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	intron	32254543	32254637	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	CDS	32254638	32254844	1	+	0	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	exon	32254638	32254844	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	intron	32254845	32254933	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	CDS	32254934	32255033	1	+	0	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	exon	32254934	32255033	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	intron	32255034	32255122	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	CDS	32255123	32255254	1	+	2	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	exon	32255123	32255254	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	intron	32255255	32255342	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	CDS	32255343	32255471	1	+	2	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	exon	32255343	32255471	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	intron	32255472	32255575	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	CDS	32255576	32255934	0.97	+	2	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	exon	32255576	32255934	.	+	.	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
Ledus.S1	AUGUSTUS	stop_codon	32255935	32255937	.	+	0	transcript_id "Ledus.S1G396800.t1"; gene_id "Ledus.S1G396800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5914.t1 is derived from g3357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27765029	27765605	.	-	.	Ledus.S1G333500
Ledus.S1	AUGUSTUS	transcript	27765029	27765605	.	-	.	transcript_id "Ledus.S1G333500.t1"; gene_id "Ledus.S1G333500"
Ledus.S1	AUGUSTUS	stop_codon	27765026	27765028	.	-	0	transcript_id "Ledus.S1G333500.t1"; gene_id "Ledus.S1G333500"
Ledus.S1	AUGUSTUS	CDS	27765029	27765448	0.99	-	0	transcript_id "Ledus.S1G333500.t1"; gene_id "Ledus.S1G333500"
Ledus.S1	AUGUSTUS	exon	27765029	27765448	.	-	.	transcript_id "Ledus.S1G333500.t1"; gene_id "Ledus.S1G333500"
Ledus.S1	AUGUSTUS	intron	27765449	27765539	.	-	.	transcript_id "Ledus.S1G333500.t1"; gene_id "Ledus.S1G333500"
Ledus.S1	AUGUSTUS	CDS	27765540	27765605	0.68	-	0	transcript_id "Ledus.S1G333500.t1"; gene_id "Ledus.S1G333500"
Ledus.S1	AUGUSTUS	exon	27765540	27765605	.	-	.	transcript_id "Ledus.S1G333500.t1"; gene_id "Ledus.S1G333500"
Ledus.S1	AUGUSTUS	start_codon	27765603	27765605	.	-	0	transcript_id "Ledus.S1G333500.t1"; gene_id "Ledus.S1G333500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8883.t1 is derived from g9913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2800092	2802228	.	+	.	Ledus.S3G036000
Ledus.S3	AUGUSTUS	transcript	2800092	2802228	.	+	.	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	start_codon	2800092	2800094	.	+	0	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	CDS	2800092	2800128	0.81	+	0	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	exon	2800092	2800128	.	+	.	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	intron	2800129	2800228	.	+	.	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	CDS	2800229	2800428	0.97	+	2	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	exon	2800229	2800428	.	+	.	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	intron	2800429	2800516	.	+	.	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	CDS	2800517	2800609	1	+	0	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	exon	2800517	2800609	.	+	.	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	intron	2800610	2800684	.	+	.	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	CDS	2800685	2800897	1	+	0	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	exon	2800685	2800897	.	+	.	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	intron	2800898	2800986	.	+	.	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	CDS	2800987	2801187	1	+	0	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	exon	2800987	2801187	.	+	.	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	intron	2801188	2801274	.	+	.	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	CDS	2801275	2802228	1	+	0	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	exon	2801275	2802228	.	+	.	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
Ledus.S3	AUGUSTUS	stop_codon	2802229	2802231	.	+	0	transcript_id "Ledus.S3G036000.t1"; gene_id "Ledus.S3G036000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3805.t1 is derived from g1241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12417432	12421018	.	-	.	Ledus.S1G122600
Ledus.S1	AUGUSTUS	transcript	12417432	12421018	.	-	.	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	stop_codon	12417429	12417431	.	-	0	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	CDS	12417432	12417544	0.99	-	2	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	exon	12417432	12417544	.	-	.	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	intron	12417545	12417879	.	-	.	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	CDS	12417880	12418144	0.82	-	0	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	exon	12417880	12418144	.	-	.	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	intron	12418145	12418289	.	-	.	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	CDS	12418290	12418403	1	-	0	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	exon	12418290	12418403	.	-	.	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	intron	12418404	12418777	.	-	.	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	CDS	12418778	12421018	0.78	-	0	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	exon	12418778	12421018	.	-	.	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
Ledus.S1	AUGUSTUS	start_codon	12421016	12421018	.	-	0	transcript_id "Ledus.S1G122600.t1"; gene_id "Ledus.S1G122600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8607.t1 is derived from g9637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	540548	541069	.	-	.	Ledus.S3G008400
Ledus.S3	AUGUSTUS	transcript	540548	541069	.	-	.	transcript_id "Ledus.S3G008400.t1"; gene_id "Ledus.S3G008400"
Ledus.S3	AUGUSTUS	stop_codon	540545	540547	.	-	0	transcript_id "Ledus.S3G008400.t1"; gene_id "Ledus.S3G008400"
Ledus.S3	AUGUSTUS	CDS	540548	541069	1	-	0	transcript_id "Ledus.S3G008400.t1"; gene_id "Ledus.S3G008400"
Ledus.S3	AUGUSTUS	exon	540548	541069	.	-	.	transcript_id "Ledus.S3G008400.t1"; gene_id "Ledus.S3G008400"
Ledus.S3	AUGUSTUS	start_codon	541067	541069	.	-	0	transcript_id "Ledus.S3G008400.t1"; gene_id "Ledus.S3G008400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11031.t1 is derived from g4649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1300768	1302021	.	-	.	Ledus.S4G018700
Ledus.S4	AUGUSTUS	transcript	1300768	1302021	.	-	.	transcript_id "Ledus.S4G018700.t1"; gene_id "Ledus.S4G018700"
Ledus.S4	AUGUSTUS	stop_codon	1300765	1300767	.	-	0	transcript_id "Ledus.S4G018700.t1"; gene_id "Ledus.S4G018700"
Ledus.S4	AUGUSTUS	CDS	1300768	1302021	0.64	-	0	transcript_id "Ledus.S4G018700.t1"; gene_id "Ledus.S4G018700"
Ledus.S4	AUGUSTUS	exon	1300768	1302021	.	-	.	transcript_id "Ledus.S4G018700.t1"; gene_id "Ledus.S4G018700"
Ledus.S4	AUGUSTUS	start_codon	1302019	1302021	.	-	0	transcript_id "Ledus.S4G018700.t1"; gene_id "Ledus.S4G018700"
# This transcript jg4411.t2 is derived from g1847.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4412.t1 is derived from g1848.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16949681	16953484	.	+	.	Ledus.S1G183300
Ledus.S1	AUGUSTUS	transcript	16949681	16953484	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	start_codon	16949681	16949683	.	+	0	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16949681	16949967	0.99	+	0	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16949681	16949967	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	intron	16949968	16950065	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16950066	16950178	1	+	1	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16950066	16950178	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	intron	16950179	16950277	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16950278	16950688	1	+	2	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16950278	16950688	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	intron	16950689	16950830	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16950831	16950973	0.57	+	2	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16950831	16950973	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	intron	16950974	16951071	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16951072	16951103	0.57	+	0	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16951072	16951103	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	intron	16951104	16951188	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16951189	16951258	0.5	+	1	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16951189	16951258	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	intron	16951259	16951348	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16951349	16951406	0.98	+	0	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16951349	16951406	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	intron	16951407	16951689	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16951690	16951805	0.98	+	2	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16951690	16951805	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	intron	16951806	16951877	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16951878	16951917	0.95	+	0	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16951878	16951917	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	intron	16951918	16951991	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16951992	16952248	0.95	+	2	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16951992	16952248	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	intron	16952249	16952473	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16952474	16952659	1	+	0	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16952474	16952659	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	intron	16952660	16952750	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16952751	16952912	1	+	0	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16952751	16952912	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	intron	16952913	16952986	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	CDS	16952987	16953484	0.91	+	0	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	exon	16952987	16953484	.	+	.	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
Ledus.S1	AUGUSTUS	stop_codon	16953485	16953487	.	+	0	transcript_id "Ledus.S1G183300.t1"; gene_id "Ledus.S1G183300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1345.t1 is derived from g8206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9355458	9355712	.	+	.	Ledus.S2G122700
Ledus.S2	AUGUSTUS	transcript	9355458	9355712	.	+	.	transcript_id "Ledus.S2G122700.t1"; gene_id "Ledus.S2G122700"
Ledus.S2	AUGUSTUS	start_codon	9355458	9355460	.	+	0	transcript_id "Ledus.S2G122700.t1"; gene_id "Ledus.S2G122700"
Ledus.S2	AUGUSTUS	CDS	9355458	9355712	0.88	+	0	transcript_id "Ledus.S2G122700.t1"; gene_id "Ledus.S2G122700"
Ledus.S2	AUGUSTUS	exon	9355458	9355712	.	+	.	transcript_id "Ledus.S2G122700.t1"; gene_id "Ledus.S2G122700"
Ledus.S2	AUGUSTUS	stop_codon	9355713	9355715	.	+	0	transcript_id "Ledus.S2G122700.t1"; gene_id "Ledus.S2G122700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg879.t1 is derived from g7740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5942475	5944518	.	-	.	Ledus.S2G076100
Ledus.S2	AUGUSTUS	transcript	5942475	5944518	.	-	.	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	stop_codon	5942472	5942474	.	-	0	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	CDS	5942475	5942681	0.81	-	0	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	exon	5942475	5942681	.	-	.	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	intron	5942682	5942765	.	-	.	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	CDS	5942766	5942900	1	-	0	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	exon	5942766	5942900	.	-	.	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	intron	5942901	5943002	.	-	.	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	CDS	5943003	5943264	1	-	1	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	exon	5943003	5943264	.	-	.	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	intron	5943265	5943343	.	-	.	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	CDS	5943344	5944518	0.98	-	0	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	exon	5943344	5944518	.	-	.	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
Ledus.S2	AUGUSTUS	start_codon	5944516	5944518	.	-	0	transcript_id "Ledus.S2G076100.t1"; gene_id "Ledus.S2G076100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12101.t1 is derived from g5720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9505531	9508322	.	-	.	Ledus.S4G125700
Ledus.S4	AUGUSTUS	transcript	9505531	9508322	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	stop_codon	9505528	9505530	.	-	0	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	CDS	9505531	9505548	0.43	-	0	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	exon	9505531	9505548	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	intron	9505549	9505698	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	CDS	9505699	9505738	0.52	-	1	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	exon	9505699	9505738	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	intron	9505739	9505826	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	CDS	9505827	9506053	0.76	-	0	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	exon	9505827	9506053	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	intron	9506054	9506274	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	CDS	9506275	9506325	1	-	0	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	exon	9506275	9506325	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	intron	9506326	9507021	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	CDS	9507022	9507228	1	-	0	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	exon	9507022	9507228	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	intron	9507229	9507524	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	CDS	9507525	9507588	1	-	1	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	exon	9507525	9507588	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	intron	9507589	9507733	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	CDS	9507734	9507790	1	-	1	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	exon	9507734	9507790	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	intron	9507791	9507980	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	CDS	9507981	9508079	1	-	1	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	exon	9507981	9508079	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	intron	9508080	9508290	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	CDS	9508291	9508322	0.99	-	0	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	exon	9508291	9508322	.	-	.	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
Ledus.S4	AUGUSTUS	start_codon	9508320	9508322	.	-	0	transcript_id "Ledus.S4G125700.t1"; gene_id "Ledus.S4G125700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2159.t1 is derived from g9022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15402530	15404248	.	+	.	Ledus.S2G204100
Ledus.S2	AUGUSTUS	transcript	15402530	15404248	.	+	.	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	start_codon	15402530	15402532	.	+	0	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	CDS	15402530	15402658	0.45	+	0	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	exon	15402530	15402658	.	+	.	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	intron	15402659	15402784	.	+	.	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	CDS	15402785	15402853	0.71	+	0	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	exon	15402785	15402853	.	+	.	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	intron	15402854	15402976	.	+	.	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	CDS	15402977	15403111	0.57	+	0	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	exon	15402977	15403111	.	+	.	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	intron	15403112	15403185	.	+	.	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	CDS	15403186	15403389	0.7	+	0	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	exon	15403186	15403389	.	+	.	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	intron	15403390	15403465	.	+	.	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	CDS	15403466	15404248	0.69	+	0	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	exon	15403466	15404248	.	+	.	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
Ledus.S2	AUGUSTUS	stop_codon	15404249	15404251	.	+	0	transcript_id "Ledus.S2G204100.t1"; gene_id "Ledus.S2G204100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7712.t1 is derived from g12383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5339476	5341527	.	+	.	Ledus.S5G049000
Ledus.S5	AUGUSTUS	transcript	5339476	5341527	.	+	.	transcript_id "Ledus.S5G049000.t1"; gene_id "Ledus.S5G049000"
Ledus.S5	AUGUSTUS	start_codon	5339476	5339478	.	+	0	transcript_id "Ledus.S5G049000.t1"; gene_id "Ledus.S5G049000"
Ledus.S5	AUGUSTUS	CDS	5339476	5341527	0.96	+	0	transcript_id "Ledus.S5G049000.t1"; gene_id "Ledus.S5G049000"
Ledus.S5	AUGUSTUS	exon	5339476	5341527	.	+	.	transcript_id "Ledus.S5G049000.t1"; gene_id "Ledus.S5G049000"
Ledus.S5	AUGUSTUS	stop_codon	5341528	5341530	.	+	0	transcript_id "Ledus.S5G049000.t1"; gene_id "Ledus.S5G049000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2425.t1 is derived from g9288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18057684	18058406	.	+	.	Ledus.S2G230700
Ledus.S2	AUGUSTUS	transcript	18057684	18058406	.	+	.	transcript_id "Ledus.S2G230700.t1"; gene_id "Ledus.S2G230700"
Ledus.S2	AUGUSTUS	start_codon	18057684	18057686	.	+	0	transcript_id "Ledus.S2G230700.t1"; gene_id "Ledus.S2G230700"
Ledus.S2	AUGUSTUS	CDS	18057684	18057824	0.51	+	0	transcript_id "Ledus.S2G230700.t1"; gene_id "Ledus.S2G230700"
Ledus.S2	AUGUSTUS	exon	18057684	18057824	.	+	.	transcript_id "Ledus.S2G230700.t1"; gene_id "Ledus.S2G230700"
Ledus.S2	AUGUSTUS	intron	18057825	18057909	.	+	.	transcript_id "Ledus.S2G230700.t1"; gene_id "Ledus.S2G230700"
Ledus.S2	AUGUSTUS	CDS	18057910	18058062	1	+	0	transcript_id "Ledus.S2G230700.t1"; gene_id "Ledus.S2G230700"
Ledus.S2	AUGUSTUS	exon	18057910	18058062	.	+	.	transcript_id "Ledus.S2G230700.t1"; gene_id "Ledus.S2G230700"
Ledus.S2	AUGUSTUS	intron	18058063	18058163	.	+	.	transcript_id "Ledus.S2G230700.t1"; gene_id "Ledus.S2G230700"
Ledus.S2	AUGUSTUS	CDS	18058164	18058406	1	+	0	transcript_id "Ledus.S2G230700.t1"; gene_id "Ledus.S2G230700"
Ledus.S2	AUGUSTUS	exon	18058164	18058406	.	+	.	transcript_id "Ledus.S2G230700.t1"; gene_id "Ledus.S2G230700"
Ledus.S2	AUGUSTUS	stop_codon	18058407	18058409	.	+	0	transcript_id "Ledus.S2G230700.t1"; gene_id "Ledus.S2G230700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1099.t1 is derived from g7960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7517580	7519339	.	+	.	Ledus.S2G098100
Ledus.S2	AUGUSTUS	transcript	7517580	7519339	.	+	.	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	start_codon	7517580	7517582	.	+	0	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	CDS	7517580	7517788	1	+	0	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	exon	7517580	7517788	.	+	.	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	intron	7517789	7517898	.	+	.	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	CDS	7517899	7518739	1	+	1	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	exon	7517899	7518739	.	+	.	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	intron	7518740	7518829	.	+	.	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	CDS	7518830	7519066	1	+	0	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	exon	7518830	7519066	.	+	.	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	intron	7519067	7519150	.	+	.	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	CDS	7519151	7519339	0.99	+	0	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	exon	7519151	7519339	.	+	.	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
Ledus.S2	AUGUSTUS	stop_codon	7519340	7519342	.	+	0	transcript_id "Ledus.S2G098100.t1"; gene_id "Ledus.S2G098100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2531.t1 is derived from g9394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18640231	18650325	.	-	.	Ledus.S2G241300
Ledus.S2	AUGUSTUS	transcript	18640231	18650325	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	stop_codon	18640228	18640230	.	-	0	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	CDS	18640231	18640974	1	-	0	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	exon	18640231	18640974	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	intron	18640975	18641151	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	CDS	18641152	18641262	1	-	0	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	exon	18641152	18641262	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	intron	18641263	18641421	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	CDS	18641422	18641511	1	-	0	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	exon	18641422	18641511	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	intron	18641512	18641722	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	CDS	18641723	18641827	1	-	0	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	exon	18641723	18641827	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	intron	18641828	18641908	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	CDS	18641909	18643111	0.92	-	0	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	exon	18641909	18643111	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	intron	18643112	18643244	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	CDS	18643245	18644981	1	-	0	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	exon	18643245	18644981	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	intron	18644982	18645177	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	CDS	18645178	18646665	1	-	0	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	exon	18645178	18646665	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	intron	18646666	18646822	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	CDS	18646823	18647024	0.93	-	1	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	exon	18646823	18647024	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	intron	18647025	18648063	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	CDS	18648064	18648132	0.91	-	1	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	exon	18648064	18648132	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	intron	18648133	18648304	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	CDS	18648305	18648309	0.91	-	0	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	exon	18648305	18648309	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	intron	18648310	18648403	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	CDS	18648404	18648646	0.35	-	0	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	exon	18648404	18648646	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	intron	18648647	18649080	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	CDS	18649081	18650325	0.96	-	0	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	exon	18649081	18650325	.	-	.	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
Ledus.S2	AUGUSTUS	start_codon	18650323	18650325	.	-	0	transcript_id "Ledus.S2G241300.t1"; gene_id "Ledus.S2G241300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9539.t1 is derived from g10569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7638039	7638753	.	+	.	Ledus.S3G101600
Ledus.S3	AUGUSTUS	transcript	7638039	7638753	.	+	.	transcript_id "Ledus.S3G101600.t1"; gene_id "Ledus.S3G101600"
Ledus.S3	AUGUSTUS	start_codon	7638039	7638041	.	+	0	transcript_id "Ledus.S3G101600.t1"; gene_id "Ledus.S3G101600"
Ledus.S3	AUGUSTUS	CDS	7638039	7638651	0.95	+	0	transcript_id "Ledus.S3G101600.t1"; gene_id "Ledus.S3G101600"
Ledus.S3	AUGUSTUS	exon	7638039	7638651	.	+	.	transcript_id "Ledus.S3G101600.t1"; gene_id "Ledus.S3G101600"
Ledus.S3	AUGUSTUS	intron	7638652	7638742	.	+	.	transcript_id "Ledus.S3G101600.t1"; gene_id "Ledus.S3G101600"
Ledus.S3	AUGUSTUS	CDS	7638743	7638753	0.96	+	2	transcript_id "Ledus.S3G101600.t1"; gene_id "Ledus.S3G101600"
Ledus.S3	AUGUSTUS	exon	7638743	7638753	.	+	.	transcript_id "Ledus.S3G101600.t1"; gene_id "Ledus.S3G101600"
Ledus.S3	AUGUSTUS	stop_codon	7638754	7638756	.	+	0	transcript_id "Ledus.S3G101600.t1"; gene_id "Ledus.S3G101600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13106.t1 is derived from g6916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5862759	5862968	.	+	.	Ledus.S6G016800
Ledus.S6	AUGUSTUS	transcript	5862759	5862968	.	+	.	transcript_id "Ledus.S6G016800.t1"; gene_id "Ledus.S6G016800"
Ledus.S6	AUGUSTUS	start_codon	5862759	5862761	.	+	0	transcript_id "Ledus.S6G016800.t1"; gene_id "Ledus.S6G016800"
Ledus.S6	AUGUSTUS	CDS	5862759	5862968	0.58	+	0	transcript_id "Ledus.S6G016800.t1"; gene_id "Ledus.S6G016800"
Ledus.S6	AUGUSTUS	exon	5862759	5862968	.	+	.	transcript_id "Ledus.S6G016800.t1"; gene_id "Ledus.S6G016800"
Ledus.S6	AUGUSTUS	stop_codon	5862969	5862971	.	+	0	transcript_id "Ledus.S6G016800.t1"; gene_id "Ledus.S6G016800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11099.t1 is derived from g4717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1787613	1789135	.	-	.	Ledus.S4G025500
Ledus.S4	AUGUSTUS	transcript	1787613	1789135	.	-	.	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	stop_codon	1787610	1787612	.	-	0	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	CDS	1787613	1787644	0.96	-	2	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	exon	1787613	1787644	.	-	.	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	intron	1787645	1787853	.	-	.	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	CDS	1787854	1787959	1	-	0	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	exon	1787854	1787959	.	-	.	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	intron	1787960	1788034	.	-	.	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	CDS	1788035	1788348	1	-	2	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	exon	1788035	1788348	.	-	.	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	intron	1788349	1788505	.	-	.	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	CDS	1788506	1788590	1	-	0	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	exon	1788506	1788590	.	-	.	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	intron	1788591	1788759	.	-	.	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	CDS	1788760	1788823	1	-	1	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	exon	1788760	1788823	.	-	.	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	intron	1788824	1788914	.	-	.	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	CDS	1788915	1789135	1	-	0	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	exon	1788915	1789135	.	-	.	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
Ledus.S4	AUGUSTUS	start_codon	1789133	1789135	.	-	0	transcript_id "Ledus.S4G025500.t1"; gene_id "Ledus.S4G025500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6301.t1 is derived from g3744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30354046	30355393	.	-	.	Ledus.S1G372200
Ledus.S1	AUGUSTUS	transcript	30354046	30355393	.	-	.	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	stop_codon	30354043	30354045	.	-	0	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	CDS	30354046	30354336	0.95	-	0	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	exon	30354046	30354336	.	-	.	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	intron	30354337	30354417	.	-	.	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	CDS	30354418	30354628	1	-	1	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	exon	30354418	30354628	.	-	.	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	intron	30354629	30354699	.	-	.	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	CDS	30354700	30355057	1	-	2	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	exon	30354700	30355057	.	-	.	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	intron	30355058	30355146	.	-	.	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	CDS	30355147	30355393	0.75	-	0	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	exon	30355147	30355393	.	-	.	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
Ledus.S1	AUGUSTUS	start_codon	30355391	30355393	.	-	0	transcript_id "Ledus.S1G372200.t1"; gene_id "Ledus.S1G372200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2803.t1 is derived from g237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3851656	3853596	.	-	.	Ledus.S1G022400
Ledus.S1	AUGUSTUS	transcript	3851656	3853596	.	-	.	transcript_id "Ledus.S1G022400.t1"; gene_id "Ledus.S1G022400"
Ledus.S1	AUGUSTUS	stop_codon	3851653	3851655	.	-	0	transcript_id "Ledus.S1G022400.t1"; gene_id "Ledus.S1G022400"
Ledus.S1	AUGUSTUS	CDS	3851656	3853596	1	-	0	transcript_id "Ledus.S1G022400.t1"; gene_id "Ledus.S1G022400"
Ledus.S1	AUGUSTUS	exon	3851656	3853596	.	-	.	transcript_id "Ledus.S1G022400.t1"; gene_id "Ledus.S1G022400"
Ledus.S1	AUGUSTUS	start_codon	3853594	3853596	.	-	0	transcript_id "Ledus.S1G022400.t1"; gene_id "Ledus.S1G022400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5757.t1 is derived from g3198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26527422	26527976	.	-	.	Ledus.S1G317800
Ledus.S1	AUGUSTUS	transcript	26527422	26527976	.	-	.	transcript_id "Ledus.S1G317800.t1"; gene_id "Ledus.S1G317800"
Ledus.S1	AUGUSTUS	stop_codon	26527419	26527421	.	-	0	transcript_id "Ledus.S1G317800.t1"; gene_id "Ledus.S1G317800"
Ledus.S1	AUGUSTUS	CDS	26527422	26527976	0.85	-	0	transcript_id "Ledus.S1G317800.t1"; gene_id "Ledus.S1G317800"
Ledus.S1	AUGUSTUS	exon	26527422	26527976	.	-	.	transcript_id "Ledus.S1G317800.t1"; gene_id "Ledus.S1G317800"
Ledus.S1	AUGUSTUS	start_codon	26527974	26527976	.	-	0	transcript_id "Ledus.S1G317800.t1"; gene_id "Ledus.S1G317800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1733.t1 is derived from g8595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12221904	12222215	.	-	.	Ledus.S2G161500
Ledus.S2	AUGUSTUS	transcript	12221904	12222215	.	-	.	transcript_id "Ledus.S2G161500.t1"; gene_id "Ledus.S2G161500"
Ledus.S2	AUGUSTUS	stop_codon	12221901	12221903	.	-	0	transcript_id "Ledus.S2G161500.t1"; gene_id "Ledus.S2G161500"
Ledus.S2	AUGUSTUS	CDS	12221904	12222215	0.94	-	0	transcript_id "Ledus.S2G161500.t1"; gene_id "Ledus.S2G161500"
Ledus.S2	AUGUSTUS	exon	12221904	12222215	.	-	.	transcript_id "Ledus.S2G161500.t1"; gene_id "Ledus.S2G161500"
Ledus.S2	AUGUSTUS	start_codon	12222213	12222215	.	-	0	transcript_id "Ledus.S2G161500.t1"; gene_id "Ledus.S2G161500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10672.t1 is derived from g11702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17015596	17016153	.	+	.	Ledus.S3G214900
Ledus.S3	AUGUSTUS	transcript	17015596	17016153	.	+	.	transcript_id "Ledus.S3G214900.t1"; gene_id "Ledus.S3G214900"
Ledus.S3	AUGUSTUS	start_codon	17015596	17015598	.	+	0	transcript_id "Ledus.S3G214900.t1"; gene_id "Ledus.S3G214900"
Ledus.S3	AUGUSTUS	CDS	17015596	17016153	0.85	+	0	transcript_id "Ledus.S3G214900.t1"; gene_id "Ledus.S3G214900"
Ledus.S3	AUGUSTUS	exon	17015596	17016153	.	+	.	transcript_id "Ledus.S3G214900.t1"; gene_id "Ledus.S3G214900"
Ledus.S3	AUGUSTUS	stop_codon	17016154	17016156	.	+	0	transcript_id "Ledus.S3G214900.t1"; gene_id "Ledus.S3G214900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2351.t1 is derived from g9214.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17397177	17402121	.	+	.	Ledus.S2G223300
Ledus.S2	AUGUSTUS	transcript	17397177	17402121	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	start_codon	17397177	17397179	.	+	0	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17397177	17397248	0.96	+	0	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17397177	17397248	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17397249	17397376	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17397377	17397521	0.97	+	0	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17397377	17397521	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17397522	17397665	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17397666	17397709	0.88	+	2	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17397666	17397709	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17397710	17397892	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17397893	17397989	0.84	+	0	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17397893	17397989	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17397990	17398253	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17398254	17398367	1	+	2	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17398254	17398367	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17398368	17398510	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17398511	17398554	1	+	2	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17398511	17398554	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17398555	17398726	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17398727	17398970	1	+	0	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17398727	17398970	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17398971	17399125	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17399126	17399485	0.99	+	2	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17399126	17399485	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17399486	17399696	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17399697	17399810	1	+	2	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17399697	17399810	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17399811	17399965	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17399966	17400045	1	+	2	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17399966	17400045	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17400046	17400171	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17400172	17400226	1	+	0	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17400172	17400226	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17400227	17400454	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17400455	17400565	1	+	2	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17400455	17400565	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17400566	17400701	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17400702	17400799	1	+	2	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17400702	17400799	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17400800	17400952	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17400953	17401051	1	+	0	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17400953	17401051	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17401052	17401152	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17401153	17401257	0.58	+	0	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17401153	17401257	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17401258	17401396	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17401397	17401474	1	+	0	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17401397	17401474	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17401475	17401546	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17401547	17401609	1	+	0	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17401547	17401609	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	intron	17401610	17401713	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	CDS	17401714	17402121	0.98	+	0	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	exon	17401714	17402121	.	+	.	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
Ledus.S2	AUGUSTUS	stop_codon	17402122	17402124	.	+	0	transcript_id "Ledus.S2G223300.t1"; gene_id "Ledus.S2G223300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2504.t1 is derived from g9367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18503984	18504335	.	+	.	Ledus.S2G238600
Ledus.S2	AUGUSTUS	transcript	18503984	18504335	.	+	.	transcript_id "Ledus.S2G238600.t1"; gene_id "Ledus.S2G238600"
Ledus.S2	AUGUSTUS	start_codon	18503984	18503986	.	+	0	transcript_id "Ledus.S2G238600.t1"; gene_id "Ledus.S2G238600"
Ledus.S2	AUGUSTUS	CDS	18503984	18504104	0.83	+	0	transcript_id "Ledus.S2G238600.t1"; gene_id "Ledus.S2G238600"
Ledus.S2	AUGUSTUS	exon	18503984	18504104	.	+	.	transcript_id "Ledus.S2G238600.t1"; gene_id "Ledus.S2G238600"
Ledus.S2	AUGUSTUS	intron	18504105	18504204	.	+	.	transcript_id "Ledus.S2G238600.t1"; gene_id "Ledus.S2G238600"
Ledus.S2	AUGUSTUS	CDS	18504205	18504335	0.51	+	2	transcript_id "Ledus.S2G238600.t1"; gene_id "Ledus.S2G238600"
Ledus.S2	AUGUSTUS	exon	18504205	18504335	.	+	.	transcript_id "Ledus.S2G238600.t1"; gene_id "Ledus.S2G238600"
Ledus.S2	AUGUSTUS	stop_codon	18504336	18504338	.	+	0	transcript_id "Ledus.S2G238600.t1"; gene_id "Ledus.S2G238600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1751.t1 is derived from g8613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12329931	12331449	.	-	.	Ledus.S2G163300
Ledus.S2	AUGUSTUS	transcript	12329931	12331449	.	-	.	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	stop_codon	12329928	12329930	.	-	0	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	CDS	12329931	12330061	1	-	2	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	exon	12329931	12330061	.	-	.	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	intron	12330062	12330130	.	-	.	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	CDS	12330131	12330266	1	-	0	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	exon	12330131	12330266	.	-	.	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	intron	12330267	12330348	.	-	.	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	CDS	12330349	12330457	0.98	-	1	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	exon	12330349	12330457	.	-	.	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	intron	12330458	12330562	.	-	.	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	CDS	12330563	12331449	0.95	-	0	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	exon	12330563	12331449	.	-	.	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
Ledus.S2	AUGUSTUS	start_codon	12331447	12331449	.	-	0	transcript_id "Ledus.S2G163300.t1"; gene_id "Ledus.S2G163300"
# This transcript jg6142.t2 is derived from g3585.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6143.t1 is derived from g3586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29250181	29250519	.	-	.	Ledus.S1G356400
Ledus.S1	AUGUSTUS	transcript	29250181	29250519	.	-	.	transcript_id "Ledus.S1G356400.t1"; gene_id "Ledus.S1G356400"
Ledus.S1	AUGUSTUS	stop_codon	29250178	29250180	.	-	0	transcript_id "Ledus.S1G356400.t1"; gene_id "Ledus.S1G356400"
Ledus.S1	AUGUSTUS	CDS	29250181	29250519	0.54	-	0	transcript_id "Ledus.S1G356400.t1"; gene_id "Ledus.S1G356400"
Ledus.S1	AUGUSTUS	exon	29250181	29250519	.	-	.	transcript_id "Ledus.S1G356400.t1"; gene_id "Ledus.S1G356400"
Ledus.S1	AUGUSTUS	start_codon	29250517	29250519	.	-	0	transcript_id "Ledus.S1G356400.t1"; gene_id "Ledus.S1G356400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5681.t1 is derived from g3120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25781031	25783793	.	+	.	Ledus.S1G310200
Ledus.S1	AUGUSTUS	transcript	25781031	25783793	.	+	.	transcript_id "Ledus.S1G310200.t1"; gene_id "Ledus.S1G310200"
Ledus.S1	AUGUSTUS	start_codon	25781031	25781033	.	+	0	transcript_id "Ledus.S1G310200.t1"; gene_id "Ledus.S1G310200"
Ledus.S1	AUGUSTUS	CDS	25781031	25783793	0.48	+	0	transcript_id "Ledus.S1G310200.t1"; gene_id "Ledus.S1G310200"
Ledus.S1	AUGUSTUS	exon	25781031	25783793	.	+	.	transcript_id "Ledus.S1G310200.t1"; gene_id "Ledus.S1G310200"
Ledus.S1	AUGUSTUS	stop_codon	25783794	25783796	.	+	0	transcript_id "Ledus.S1G310200.t1"; gene_id "Ledus.S1G310200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5178.t1 is derived from g2617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22169226	22171002	.	+	.	Ledus.S1G259900
Ledus.S1	AUGUSTUS	transcript	22169226	22171002	.	+	.	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	start_codon	22169226	22169228	.	+	0	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	CDS	22169226	22169244	0.78	+	0	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	exon	22169226	22169244	.	+	.	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	intron	22169245	22169497	.	+	.	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	CDS	22169498	22170029	0.74	+	2	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	exon	22169498	22170029	.	+	.	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	intron	22170030	22170124	.	+	.	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	CDS	22170125	22170205	1	+	1	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	exon	22170125	22170205	.	+	.	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	intron	22170206	22170356	.	+	.	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	CDS	22170357	22170459	1	+	1	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	exon	22170357	22170459	.	+	.	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	intron	22170460	22170690	.	+	.	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	CDS	22170691	22170780	1	+	0	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	exon	22170691	22170780	.	+	.	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	intron	22170781	22170933	.	+	.	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	CDS	22170934	22171002	0.98	+	0	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	exon	22170934	22171002	.	+	.	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
Ledus.S1	AUGUSTUS	stop_codon	22171003	22171005	.	+	0	transcript_id "Ledus.S1G259900.t1"; gene_id "Ledus.S1G259900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5526.t1 is derived from g2965.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24945523	24947220	.	-	.	Ledus.S1G294700
Ledus.S1	AUGUSTUS	transcript	24945860	24947220	.	-	.	transcript_id "Ledus.S1G294700.t1"; gene_id "Ledus.S1G294700"
Ledus.S1	AUGUSTUS	stop_codon	24945857	24945859	.	-	0	transcript_id "Ledus.S1G294700.t1"; gene_id "Ledus.S1G294700"
Ledus.S1	AUGUSTUS	CDS	24945860	24945869	0.62	-	1	transcript_id "Ledus.S1G294700.t1"; gene_id "Ledus.S1G294700"
Ledus.S1	AUGUSTUS	exon	24945860	24945869	.	-	.	transcript_id "Ledus.S1G294700.t1"; gene_id "Ledus.S1G294700"
Ledus.S1	AUGUSTUS	intron	24945870	24945946	.	-	.	transcript_id "Ledus.S1G294700.t1"; gene_id "Ledus.S1G294700"
Ledus.S1	AUGUSTUS	CDS	24945947	24947220	0.58	-	0	transcript_id "Ledus.S1G294700.t1"; gene_id "Ledus.S1G294700"
Ledus.S1	AUGUSTUS	exon	24945947	24947220	.	-	.	transcript_id "Ledus.S1G294700.t1"; gene_id "Ledus.S1G294700"
Ledus.S1	AUGUSTUS	start_codon	24947218	24947220	.	-	0	transcript_id "Ledus.S1G294700.t1"; gene_id "Ledus.S1G294700"
Ledus.S1	AUGUSTUS	transcript	24945523	24947220	.	-	.	transcript_id "Ledus.S1G294700.t2"; gene_id "Ledus.S1G294700"
Ledus.S1	AUGUSTUS	stop_codon	24945520	24945522	.	-	0	transcript_id "Ledus.S1G294700.t2"; gene_id "Ledus.S1G294700"
Ledus.S1	AUGUSTUS	CDS	24945523	24947220	0.99	-	0	transcript_id "Ledus.S1G294700.t2"; gene_id "Ledus.S1G294700"
Ledus.S1	AUGUSTUS	exon	24945523	24947220	.	-	.	transcript_id "Ledus.S1G294700.t2"; gene_id "Ledus.S1G294700"
Ledus.S1	AUGUSTUS	start_codon	24947218	24947220	.	-	0	transcript_id "Ledus.S1G294700.t2"; gene_id "Ledus.S1G294700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10406.t1 is derived from g11436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14898113	14898412	.	-	.	Ledus.S3G188300
Ledus.S3	AUGUSTUS	transcript	14898113	14898412	.	-	.	transcript_id "Ledus.S3G188300.t1"; gene_id "Ledus.S3G188300"
Ledus.S3	AUGUSTUS	stop_codon	14898110	14898112	.	-	0	transcript_id "Ledus.S3G188300.t1"; gene_id "Ledus.S3G188300"
Ledus.S3	AUGUSTUS	CDS	14898113	14898412	0.85	-	0	transcript_id "Ledus.S3G188300.t1"; gene_id "Ledus.S3G188300"
Ledus.S3	AUGUSTUS	exon	14898113	14898412	.	-	.	transcript_id "Ledus.S3G188300.t1"; gene_id "Ledus.S3G188300"
Ledus.S3	AUGUSTUS	start_codon	14898410	14898412	.	-	0	transcript_id "Ledus.S3G188300.t1"; gene_id "Ledus.S3G188300"
# This transcript jg12534.t2 is derived from g6155.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12535.t1 is derived from g6157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12773853	12774077	.	-	.	Ledus.S4G169100
Ledus.S4	AUGUSTUS	transcript	12773853	12774077	.	-	.	transcript_id "Ledus.S4G169100.t1"; gene_id "Ledus.S4G169100"
Ledus.S4	AUGUSTUS	stop_codon	12773850	12773852	.	-	0	transcript_id "Ledus.S4G169100.t1"; gene_id "Ledus.S4G169100"
Ledus.S4	AUGUSTUS	CDS	12773853	12774077	0.71	-	0	transcript_id "Ledus.S4G169100.t1"; gene_id "Ledus.S4G169100"
Ledus.S4	AUGUSTUS	exon	12773853	12774077	.	-	.	transcript_id "Ledus.S4G169100.t1"; gene_id "Ledus.S4G169100"
Ledus.S4	AUGUSTUS	start_codon	12774075	12774077	.	-	0	transcript_id "Ledus.S4G169100.t1"; gene_id "Ledus.S4G169100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1865.t1 is derived from g8728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13004057	13004330	.	+	.	Ledus.S2G174700
Ledus.S2	AUGUSTUS	transcript	13004057	13004330	.	+	.	transcript_id "Ledus.S2G174700.t1"; gene_id "Ledus.S2G174700"
Ledus.S2	AUGUSTUS	start_codon	13004057	13004059	.	+	0	transcript_id "Ledus.S2G174700.t1"; gene_id "Ledus.S2G174700"
Ledus.S2	AUGUSTUS	CDS	13004057	13004243	0.49	+	0	transcript_id "Ledus.S2G174700.t1"; gene_id "Ledus.S2G174700"
Ledus.S2	AUGUSTUS	exon	13004057	13004243	.	+	.	transcript_id "Ledus.S2G174700.t1"; gene_id "Ledus.S2G174700"
Ledus.S2	AUGUSTUS	intron	13004244	13004319	.	+	.	transcript_id "Ledus.S2G174700.t1"; gene_id "Ledus.S2G174700"
Ledus.S2	AUGUSTUS	CDS	13004320	13004330	0.48	+	2	transcript_id "Ledus.S2G174700.t1"; gene_id "Ledus.S2G174700"
Ledus.S2	AUGUSTUS	exon	13004320	13004330	.	+	.	transcript_id "Ledus.S2G174700.t1"; gene_id "Ledus.S2G174700"
Ledus.S2	AUGUSTUS	stop_codon	13004331	13004333	.	+	0	transcript_id "Ledus.S2G174700.t1"; gene_id "Ledus.S2G174700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12988.t1 is derived from g6798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1883789	1884806	.	-	.	Ledus.S6G005000
Ledus.S6	AUGUSTUS	transcript	1883789	1884806	.	-	.	transcript_id "Ledus.S6G005000.t1"; gene_id "Ledus.S6G005000"
Ledus.S6	AUGUSTUS	stop_codon	1883786	1883788	.	-	0	transcript_id "Ledus.S6G005000.t1"; gene_id "Ledus.S6G005000"
Ledus.S6	AUGUSTUS	CDS	1883789	1884365	0.81	-	1	transcript_id "Ledus.S6G005000.t1"; gene_id "Ledus.S6G005000"
Ledus.S6	AUGUSTUS	exon	1883789	1884365	.	-	.	transcript_id "Ledus.S6G005000.t1"; gene_id "Ledus.S6G005000"
Ledus.S6	AUGUSTUS	intron	1884366	1884438	.	-	.	transcript_id "Ledus.S6G005000.t1"; gene_id "Ledus.S6G005000"
Ledus.S6	AUGUSTUS	CDS	1884439	1884806	0.83	-	0	transcript_id "Ledus.S6G005000.t1"; gene_id "Ledus.S6G005000"
Ledus.S6	AUGUSTUS	exon	1884439	1884806	.	-	.	transcript_id "Ledus.S6G005000.t1"; gene_id "Ledus.S6G005000"
Ledus.S6	AUGUSTUS	start_codon	1884804	1884806	.	-	0	transcript_id "Ledus.S6G005000.t1"; gene_id "Ledus.S6G005000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11855.t1 is derived from g5474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7314119	7315705	.	+	.	Ledus.S4G101100
Ledus.S4	AUGUSTUS	transcript	7314119	7315705	.	+	.	transcript_id "Ledus.S4G101100.t1"; gene_id "Ledus.S4G101100"
Ledus.S4	AUGUSTUS	start_codon	7314119	7314121	.	+	0	transcript_id "Ledus.S4G101100.t1"; gene_id "Ledus.S4G101100"
Ledus.S4	AUGUSTUS	CDS	7314119	7314251	0.95	+	0	transcript_id "Ledus.S4G101100.t1"; gene_id "Ledus.S4G101100"
Ledus.S4	AUGUSTUS	exon	7314119	7314251	.	+	.	transcript_id "Ledus.S4G101100.t1"; gene_id "Ledus.S4G101100"
Ledus.S4	AUGUSTUS	intron	7314252	7314529	.	+	.	transcript_id "Ledus.S4G101100.t1"; gene_id "Ledus.S4G101100"
Ledus.S4	AUGUSTUS	CDS	7314530	7314590	1	+	2	transcript_id "Ledus.S4G101100.t1"; gene_id "Ledus.S4G101100"
Ledus.S4	AUGUSTUS	exon	7314530	7314590	.	+	.	transcript_id "Ledus.S4G101100.t1"; gene_id "Ledus.S4G101100"
Ledus.S4	AUGUSTUS	intron	7314591	7314795	.	+	.	transcript_id "Ledus.S4G101100.t1"; gene_id "Ledus.S4G101100"
Ledus.S4	AUGUSTUS	CDS	7314796	7315705	0.44	+	1	transcript_id "Ledus.S4G101100.t1"; gene_id "Ledus.S4G101100"
Ledus.S4	AUGUSTUS	exon	7314796	7315705	.	+	.	transcript_id "Ledus.S4G101100.t1"; gene_id "Ledus.S4G101100"
Ledus.S4	AUGUSTUS	stop_codon	7315706	7315708	.	+	0	transcript_id "Ledus.S4G101100.t1"; gene_id "Ledus.S4G101100"
# This transcript jg11284.t2 is derived from g4902.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11285.t1 is derived from g4903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3375145	3375678	.	-	.	Ledus.S4G044100
Ledus.S4	AUGUSTUS	transcript	3375145	3375678	.	-	.	transcript_id "Ledus.S4G044100.t1"; gene_id "Ledus.S4G044100"
Ledus.S4	AUGUSTUS	stop_codon	3375142	3375144	.	-	0	transcript_id "Ledus.S4G044100.t1"; gene_id "Ledus.S4G044100"
Ledus.S4	AUGUSTUS	CDS	3375145	3375378	0.99	-	0	transcript_id "Ledus.S4G044100.t1"; gene_id "Ledus.S4G044100"
Ledus.S4	AUGUSTUS	exon	3375145	3375378	.	-	.	transcript_id "Ledus.S4G044100.t1"; gene_id "Ledus.S4G044100"
Ledus.S4	AUGUSTUS	intron	3375379	3375474	.	-	.	transcript_id "Ledus.S4G044100.t1"; gene_id "Ledus.S4G044100"
Ledus.S4	AUGUSTUS	CDS	3375475	3375678	1	-	0	transcript_id "Ledus.S4G044100.t1"; gene_id "Ledus.S4G044100"
Ledus.S4	AUGUSTUS	exon	3375475	3375678	.	-	.	transcript_id "Ledus.S4G044100.t1"; gene_id "Ledus.S4G044100"
Ledus.S4	AUGUSTUS	start_codon	3375676	3375678	.	-	0	transcript_id "Ledus.S4G044100.t1"; gene_id "Ledus.S4G044100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3062.t1 is derived from g497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5607367	5610721	.	-	.	Ledus.S1G048300
Ledus.S1	AUGUSTUS	transcript	5607367	5610721	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	stop_codon	5607364	5607366	.	-	0	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	CDS	5607367	5608125	1	-	0	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	exon	5607367	5608125	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	intron	5608126	5608225	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	CDS	5608226	5608469	0.99	-	1	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	exon	5608226	5608469	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	intron	5608470	5608668	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	CDS	5608669	5608832	0.71	-	0	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	exon	5608669	5608832	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	intron	5608833	5608931	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	CDS	5608932	5608997	0.69	-	0	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	exon	5608932	5608997	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	intron	5608998	5609080	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	CDS	5609081	5609488	0.64	-	0	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	exon	5609081	5609488	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	intron	5609489	5609587	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	CDS	5609588	5609788	1	-	0	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	exon	5609588	5609788	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	intron	5609789	5609922	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	CDS	5609923	5610166	1	-	1	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	exon	5609923	5610166	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	intron	5610167	5610244	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	CDS	5610245	5610415	1	-	1	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	exon	5610245	5610415	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	intron	5610416	5610512	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	CDS	5610513	5610721	0.77	-	0	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	exon	5610513	5610721	.	-	.	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
Ledus.S1	AUGUSTUS	start_codon	5610719	5610721	.	-	0	transcript_id "Ledus.S1G048300.t1"; gene_id "Ledus.S1G048300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10839.t1 is derived from g8.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C22	AUGUSTUS	gene	22433	24196	.	-	.	Ledus.C22G000600
Ledus.C22	AUGUSTUS	transcript	22433	24196	.	-	.	transcript_id "Ledus.C22G000600.t1"; gene_id "Ledus.C22G000600"
Ledus.C22	AUGUSTUS	stop_codon	22430	22432	.	-	0	transcript_id "Ledus.C22G000600.t1"; gene_id "Ledus.C22G000600"
Ledus.C22	AUGUSTUS	CDS	22433	24196	0.4	-	0	transcript_id "Ledus.C22G000600.t1"; gene_id "Ledus.C22G000600"
Ledus.C22	AUGUSTUS	exon	22433	24196	.	-	.	transcript_id "Ledus.C22G000600.t1"; gene_id "Ledus.C22G000600"
Ledus.C22	AUGUSTUS	start_codon	24194	24196	.	-	0	transcript_id "Ledus.C22G000600.t1"; gene_id "Ledus.C22G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1185.t1 is derived from g8046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8377311	8384735	.	-	.	Ledus.S2G106700
Ledus.S2	AUGUSTUS	transcript	8377311	8384735	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	stop_codon	8377308	8377310	.	-	0	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8377311	8379007	0.49	-	2	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8377311	8379007	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8379008	8379134	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8379135	8379162	1	-	0	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8379135	8379162	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8379163	8379250	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8379251	8379371	1	-	1	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8379251	8379371	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8379372	8379615	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8379616	8379728	1	-	0	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8379616	8379728	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8379729	8379860	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8379861	8379956	1	-	0	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8379861	8379956	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8379957	8380054	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8380055	8380113	1	-	2	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8380055	8380113	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8380114	8380261	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8380262	8380416	0.89	-	1	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8380262	8380416	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8380417	8380526	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8380527	8380717	0.74	-	0	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8380527	8380717	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8380718	8380830	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8380831	8380919	0.98	-	2	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8380831	8380919	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8380920	8381000	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8381001	8381193	1	-	0	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8381001	8381193	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8381194	8381314	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8381315	8381439	0.99	-	2	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8381315	8381439	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8381440	8381620	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8381621	8382039	1	-	1	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8381621	8382039	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8382040	8382169	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8382170	8382234	1	-	0	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8382170	8382234	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8382235	8382392	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8382393	8382686	1	-	0	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8382393	8382686	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8382687	8382850	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8382851	8383788	0.66	-	2	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8382851	8383788	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8383789	8383860	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8383861	8383972	0.59	-	0	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8383861	8383972	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8383973	8384071	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8384072	8384247	0.73	-	2	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8384072	8384247	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	intron	8384248	8384440	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	CDS	8384441	8384735	0.83	-	0	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	exon	8384441	8384735	.	-	.	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
Ledus.S2	AUGUSTUS	start_codon	8384733	8384735	.	-	0	transcript_id "Ledus.S2G106700.t1"; gene_id "Ledus.S2G106700"
# This transcript jg585.t2 is derived from g7446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg585.t3 is derived from g7446.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg586.t1 is derived from g7447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3479631	3480146	.	+	.	Ledus.S2G046800
Ledus.S2	AUGUSTUS	transcript	3479631	3480146	.	+	.	transcript_id "Ledus.S2G046800.t1"; gene_id "Ledus.S2G046800"
Ledus.S2	AUGUSTUS	start_codon	3479631	3479633	.	+	0	transcript_id "Ledus.S2G046800.t1"; gene_id "Ledus.S2G046800"
Ledus.S2	AUGUSTUS	CDS	3479631	3479705	0.39	+	0	transcript_id "Ledus.S2G046800.t1"; gene_id "Ledus.S2G046800"
Ledus.S2	AUGUSTUS	exon	3479631	3479705	.	+	.	transcript_id "Ledus.S2G046800.t1"; gene_id "Ledus.S2G046800"
Ledus.S2	AUGUSTUS	intron	3479706	3479833	.	+	.	transcript_id "Ledus.S2G046800.t1"; gene_id "Ledus.S2G046800"
Ledus.S2	AUGUSTUS	CDS	3479834	3479935	0.69	+	0	transcript_id "Ledus.S2G046800.t1"; gene_id "Ledus.S2G046800"
Ledus.S2	AUGUSTUS	exon	3479834	3479935	.	+	.	transcript_id "Ledus.S2G046800.t1"; gene_id "Ledus.S2G046800"
Ledus.S2	AUGUSTUS	intron	3479936	3480035	.	+	.	transcript_id "Ledus.S2G046800.t1"; gene_id "Ledus.S2G046800"
Ledus.S2	AUGUSTUS	CDS	3480036	3480146	0.97	+	0	transcript_id "Ledus.S2G046800.t1"; gene_id "Ledus.S2G046800"
Ledus.S2	AUGUSTUS	exon	3480036	3480146	.	+	.	transcript_id "Ledus.S2G046800.t1"; gene_id "Ledus.S2G046800"
Ledus.S2	AUGUSTUS	stop_codon	3480147	3480149	.	+	0	transcript_id "Ledus.S2G046800.t1"; gene_id "Ledus.S2G046800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg620.t1 is derived from g7481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3706260	3708346	.	-	.	Ledus.S2G050200
Ledus.S2	AUGUSTUS	transcript	3706260	3708346	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	stop_codon	3706257	3706259	.	-	0	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	CDS	3706260	3706339	1	-	2	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	exon	3706260	3706339	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	intron	3706340	3706432	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	CDS	3706433	3706535	1	-	0	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	exon	3706433	3706535	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	intron	3706536	3706630	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	CDS	3706631	3707152	0.88	-	0	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	exon	3706631	3707152	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	intron	3707153	3707238	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	CDS	3707239	3707283	1	-	0	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	exon	3707239	3707283	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	intron	3707284	3707403	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	CDS	3707404	3707504	0.99	-	2	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	exon	3707404	3707504	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	intron	3707505	3707698	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	CDS	3707699	3707765	1	-	0	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	exon	3707699	3707765	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	intron	3707766	3707851	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	CDS	3707852	3707920	1	-	0	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	exon	3707852	3707920	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	intron	3707921	3708067	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	CDS	3708068	3708151	1	-	0	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	exon	3708068	3708151	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	intron	3708152	3708280	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	CDS	3708281	3708346	1	-	0	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	exon	3708281	3708346	.	-	.	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
Ledus.S2	AUGUSTUS	start_codon	3708344	3708346	.	-	0	transcript_id "Ledus.S2G050200.t1"; gene_id "Ledus.S2G050200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1337.t1 is derived from g8198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9318731	9319195	.	+	.	Ledus.S2G121900
Ledus.S2	AUGUSTUS	transcript	9318731	9319195	.	+	.	transcript_id "Ledus.S2G121900.t1"; gene_id "Ledus.S2G121900"
Ledus.S2	AUGUSTUS	start_codon	9318731	9318733	.	+	0	transcript_id "Ledus.S2G121900.t1"; gene_id "Ledus.S2G121900"
Ledus.S2	AUGUSTUS	CDS	9318731	9319195	0.9	+	0	transcript_id "Ledus.S2G121900.t1"; gene_id "Ledus.S2G121900"
Ledus.S2	AUGUSTUS	exon	9318731	9319195	.	+	.	transcript_id "Ledus.S2G121900.t1"; gene_id "Ledus.S2G121900"
Ledus.S2	AUGUSTUS	stop_codon	9319196	9319198	.	+	0	transcript_id "Ledus.S2G121900.t1"; gene_id "Ledus.S2G121900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1260.t1 is derived from g8121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8939950	8940483	.	-	.	Ledus.S2G114200
Ledus.S2	AUGUSTUS	transcript	8939950	8940483	.	-	.	transcript_id "Ledus.S2G114200.t1"; gene_id "Ledus.S2G114200"
Ledus.S2	AUGUSTUS	stop_codon	8939947	8939949	.	-	0	transcript_id "Ledus.S2G114200.t1"; gene_id "Ledus.S2G114200"
Ledus.S2	AUGUSTUS	CDS	8939950	8940483	1	-	0	transcript_id "Ledus.S2G114200.t1"; gene_id "Ledus.S2G114200"
Ledus.S2	AUGUSTUS	exon	8939950	8940483	.	-	.	transcript_id "Ledus.S2G114200.t1"; gene_id "Ledus.S2G114200"
Ledus.S2	AUGUSTUS	start_codon	8940481	8940483	.	-	0	transcript_id "Ledus.S2G114200.t1"; gene_id "Ledus.S2G114200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1557.t1 is derived from g8418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10921533	10923706	.	+	.	Ledus.S2G143900
Ledus.S2	AUGUSTUS	transcript	10921533	10923706	.	+	.	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	start_codon	10921533	10921535	.	+	0	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	CDS	10921533	10921870	0.89	+	0	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	exon	10921533	10921870	.	+	.	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	intron	10921871	10921998	.	+	.	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	CDS	10921999	10922100	0.86	+	1	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	exon	10921999	10922100	.	+	.	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	intron	10922101	10922213	.	+	.	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	CDS	10922214	10923019	0.78	+	1	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	exon	10922214	10923019	.	+	.	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	intron	10923020	10923116	.	+	.	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	CDS	10923117	10923706	0.95	+	2	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	exon	10923117	10923706	.	+	.	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
Ledus.S2	AUGUSTUS	stop_codon	10923707	10923709	.	+	0	transcript_id "Ledus.S2G143900.t1"; gene_id "Ledus.S2G143900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12116.t1 is derived from g5735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9630477	9631808	.	-	.	Ledus.S4G127200
Ledus.S4	AUGUSTUS	transcript	9630477	9631808	.	-	.	transcript_id "Ledus.S4G127200.t1"; gene_id "Ledus.S4G127200"
Ledus.S4	AUGUSTUS	stop_codon	9630474	9630476	.	-	0	transcript_id "Ledus.S4G127200.t1"; gene_id "Ledus.S4G127200"
Ledus.S4	AUGUSTUS	CDS	9630477	9630933	1	-	1	transcript_id "Ledus.S4G127200.t1"; gene_id "Ledus.S4G127200"
Ledus.S4	AUGUSTUS	exon	9630477	9630933	.	-	.	transcript_id "Ledus.S4G127200.t1"; gene_id "Ledus.S4G127200"
Ledus.S4	AUGUSTUS	intron	9630934	9631021	.	-	.	transcript_id "Ledus.S4G127200.t1"; gene_id "Ledus.S4G127200"
Ledus.S4	AUGUSTUS	CDS	9631022	9631150	1	-	1	transcript_id "Ledus.S4G127200.t1"; gene_id "Ledus.S4G127200"
Ledus.S4	AUGUSTUS	exon	9631022	9631150	.	-	.	transcript_id "Ledus.S4G127200.t1"; gene_id "Ledus.S4G127200"
Ledus.S4	AUGUSTUS	intron	9631151	9631227	.	-	.	transcript_id "Ledus.S4G127200.t1"; gene_id "Ledus.S4G127200"
Ledus.S4	AUGUSTUS	CDS	9631228	9631808	0.96	-	0	transcript_id "Ledus.S4G127200.t1"; gene_id "Ledus.S4G127200"
Ledus.S4	AUGUSTUS	exon	9631228	9631808	.	-	.	transcript_id "Ledus.S4G127200.t1"; gene_id "Ledus.S4G127200"
Ledus.S4	AUGUSTUS	start_codon	9631806	9631808	.	-	0	transcript_id "Ledus.S4G127200.t1"; gene_id "Ledus.S4G127200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg853.t1 is derived from g7714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5686150	5686404	.	-	.	Ledus.S2G073500
Ledus.S2	AUGUSTUS	transcript	5686150	5686404	.	-	.	transcript_id "Ledus.S2G073500.t1"; gene_id "Ledus.S2G073500"
Ledus.S2	AUGUSTUS	stop_codon	5686147	5686149	.	-	0	transcript_id "Ledus.S2G073500.t1"; gene_id "Ledus.S2G073500"
Ledus.S2	AUGUSTUS	CDS	5686150	5686404	0.85	-	0	transcript_id "Ledus.S2G073500.t1"; gene_id "Ledus.S2G073500"
Ledus.S2	AUGUSTUS	exon	5686150	5686404	.	-	.	transcript_id "Ledus.S2G073500.t1"; gene_id "Ledus.S2G073500"
Ledus.S2	AUGUSTUS	start_codon	5686402	5686404	.	-	0	transcript_id "Ledus.S2G073500.t1"; gene_id "Ledus.S2G073500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3610.t1 is derived from g1046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10199373	10200622	.	+	.	Ledus.S1G103100
Ledus.S1	AUGUSTUS	transcript	10199373	10200622	.	+	.	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	start_codon	10199373	10199375	.	+	0	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	CDS	10199373	10199395	0.63	+	0	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	exon	10199373	10199395	.	+	.	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	intron	10199396	10199489	.	+	.	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	CDS	10199490	10199649	0.97	+	1	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	exon	10199490	10199649	.	+	.	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	intron	10199650	10199719	.	+	.	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	CDS	10199720	10200083	1	+	0	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	exon	10199720	10200083	.	+	.	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	intron	10200084	10200154	.	+	.	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	CDS	10200155	10200225	1	+	2	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	exon	10200155	10200225	.	+	.	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	intron	10200226	10200323	.	+	.	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	CDS	10200324	10200422	1	+	0	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	exon	10200324	10200422	.	+	.	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	intron	10200423	10200514	.	+	.	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	CDS	10200515	10200622	1	+	0	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	exon	10200515	10200622	.	+	.	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
Ledus.S1	AUGUSTUS	stop_codon	10200623	10200625	.	+	0	transcript_id "Ledus.S1G103100.t1"; gene_id "Ledus.S1G103100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5404.t1 is derived from g2843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24007641	24009623	.	-	.	Ledus.S1G282500
Ledus.S1	AUGUSTUS	transcript	24007641	24009623	.	-	.	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	stop_codon	24007638	24007640	.	-	0	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	CDS	24007641	24007715	1	-	0	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	exon	24007641	24007715	.	-	.	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	intron	24007716	24007865	.	-	.	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	CDS	24007866	24008339	0.93	-	0	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	exon	24007866	24008339	.	-	.	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	intron	24008340	24008497	.	-	.	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	CDS	24008498	24008662	1	-	0	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	exon	24008498	24008662	.	-	.	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	intron	24008663	24008851	.	-	.	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	CDS	24008852	24008968	1	-	0	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	exon	24008852	24008968	.	-	.	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	intron	24008969	24009173	.	-	.	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	CDS	24009174	24009333	0.98	-	1	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	exon	24009174	24009333	.	-	.	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	intron	24009334	24009525	.	-	.	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	CDS	24009526	24009623	0.58	-	0	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	exon	24009526	24009623	.	-	.	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
Ledus.S1	AUGUSTUS	start_codon	24009621	24009623	.	-	0	transcript_id "Ledus.S1G282500.t1"; gene_id "Ledus.S1G282500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10564.t1 is derived from g11594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16160324	16161550	.	-	.	Ledus.S3G204100
Ledus.S3	AUGUSTUS	transcript	16160324	16161550	.	-	.	transcript_id "Ledus.S3G204100.t1"; gene_id "Ledus.S3G204100"
Ledus.S3	AUGUSTUS	stop_codon	16160321	16160323	.	-	0	transcript_id "Ledus.S3G204100.t1"; gene_id "Ledus.S3G204100"
Ledus.S3	AUGUSTUS	CDS	16160324	16160857	1	-	0	transcript_id "Ledus.S3G204100.t1"; gene_id "Ledus.S3G204100"
Ledus.S3	AUGUSTUS	exon	16160324	16160857	.	-	.	transcript_id "Ledus.S3G204100.t1"; gene_id "Ledus.S3G204100"
Ledus.S3	AUGUSTUS	intron	16160858	16160936	.	-	.	transcript_id "Ledus.S3G204100.t1"; gene_id "Ledus.S3G204100"
Ledus.S3	AUGUSTUS	CDS	16160937	16161172	1	-	2	transcript_id "Ledus.S3G204100.t1"; gene_id "Ledus.S3G204100"
Ledus.S3	AUGUSTUS	exon	16160937	16161172	.	-	.	transcript_id "Ledus.S3G204100.t1"; gene_id "Ledus.S3G204100"
Ledus.S3	AUGUSTUS	intron	16161173	16161258	.	-	.	transcript_id "Ledus.S3G204100.t1"; gene_id "Ledus.S3G204100"
Ledus.S3	AUGUSTUS	CDS	16161259	16161550	0.37	-	0	transcript_id "Ledus.S3G204100.t1"; gene_id "Ledus.S3G204100"
Ledus.S3	AUGUSTUS	exon	16161259	16161550	.	-	.	transcript_id "Ledus.S3G204100.t1"; gene_id "Ledus.S3G204100"
Ledus.S3	AUGUSTUS	start_codon	16161548	16161550	.	-	0	transcript_id "Ledus.S3G204100.t1"; gene_id "Ledus.S3G204100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3386.t1 is derived from g821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8011643	8013887	.	-	.	Ledus.S1G080700
Ledus.S1	AUGUSTUS	transcript	8011643	8013887	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	stop_codon	8011640	8011642	.	-	0	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	CDS	8011643	8011723	1	-	0	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	exon	8011643	8011723	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	intron	8011724	8011815	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	CDS	8011816	8011866	1	-	0	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	exon	8011816	8011866	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	intron	8011867	8011973	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	CDS	8011974	8012052	1	-	1	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	exon	8011974	8012052	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	intron	8012053	8012124	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	CDS	8012125	8012228	1	-	0	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	exon	8012125	8012228	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	intron	8012229	8012322	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	CDS	8012323	8012413	1	-	1	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	exon	8012323	8012413	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	intron	8012414	8012544	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	CDS	8012545	8012665	1	-	2	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	exon	8012545	8012665	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	intron	8012666	8012836	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	CDS	8012837	8012996	1	-	0	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	exon	8012837	8012996	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	intron	8012997	8013105	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	CDS	8013106	8013167	0.78	-	2	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	exon	8013106	8013167	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	intron	8013168	8013335	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	CDS	8013336	8013495	1	-	0	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	exon	8013336	8013495	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	intron	8013496	8013566	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	CDS	8013567	8013887	0.63	-	0	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	exon	8013567	8013887	.	-	.	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
Ledus.S1	AUGUSTUS	start_codon	8013885	8013887	.	-	0	transcript_id "Ledus.S1G080700.t1"; gene_id "Ledus.S1G080700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg752.t1 is derived from g7613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4820583	4822788	.	+	.	Ledus.S2G063400
Ledus.S2	AUGUSTUS	transcript	4820583	4822788	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	start_codon	4820583	4820585	.	+	0	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	CDS	4820583	4820855	1	+	0	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	exon	4820583	4820855	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	intron	4820856	4820940	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	CDS	4820941	4821126	1	+	0	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	exon	4820941	4821126	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	intron	4821127	4821215	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	CDS	4821216	4821286	1	+	0	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	exon	4821216	4821286	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	intron	4821287	4821422	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	CDS	4821423	4821574	0.86	+	1	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	exon	4821423	4821574	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	intron	4821575	4821676	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	CDS	4821677	4821945	0.86	+	2	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	exon	4821677	4821945	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	intron	4821946	4822018	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	CDS	4822019	4822088	1	+	0	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	exon	4822019	4822088	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	intron	4822089	4822169	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	CDS	4822170	4822369	0.99	+	2	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	exon	4822170	4822369	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	intron	4822370	4822470	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	CDS	4822471	4822551	1	+	0	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	exon	4822471	4822551	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	intron	4822552	4822629	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	CDS	4822630	4822788	0.97	+	0	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	exon	4822630	4822788	.	+	.	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
Ledus.S2	AUGUSTUS	stop_codon	4822789	4822791	.	+	0	transcript_id "Ledus.S2G063400.t1"; gene_id "Ledus.S2G063400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12255.t1 is derived from g5875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10655519	10663900	.	-	.	Ledus.S4G141100
Ledus.S4	AUGUSTUS	transcript	10655519	10663900	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	stop_codon	10655516	10655518	.	-	0	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10655519	10655551	1	-	0	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10655519	10655551	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10655552	10655647	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10655648	10655696	0.88	-	1	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10655648	10655696	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10655697	10655870	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10655871	10659262	0.52	-	0	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10655871	10659262	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10659263	10659468	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10659469	10660425	1	-	0	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10659469	10660425	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10660426	10660572	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10660573	10660739	0.96	-	2	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10660573	10660739	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10660740	10661001	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10661002	10661053	0.8	-	0	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10661002	10661053	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10661054	10661491	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10661492	10661641	0.82	-	0	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10661492	10661641	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10661642	10661719	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10661720	10661842	1	-	0	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10661720	10661842	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10661843	10661967	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10661968	10662264	1	-	0	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10661968	10662264	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10662265	10662402	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10662403	10662473	1	-	2	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10662403	10662473	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10662474	10662577	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10662578	10662655	0.81	-	2	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10662578	10662655	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10662656	10662746	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10662747	10662833	1	-	2	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10662747	10662833	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10662834	10662961	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10662962	10663034	1	-	0	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10662962	10663034	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10663035	10663127	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10663128	10663228	1	-	2	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10663128	10663228	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10663229	10663376	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10663377	10663499	1	-	2	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10663377	10663499	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	intron	10663500	10663596	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	CDS	10663597	10663900	0.72	-	0	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	exon	10663597	10663900	.	-	.	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
Ledus.S4	AUGUSTUS	start_codon	10663898	10663900	.	-	0	transcript_id "Ledus.S4G141100.t1"; gene_id "Ledus.S4G141100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1588.t1 is derived from g8449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11153995	11155357	.	+	.	Ledus.S2G147000
Ledus.S2	AUGUSTUS	transcript	11153995	11155357	.	+	.	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	start_codon	11153995	11153997	.	+	0	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	CDS	11153995	11154133	0.88	+	0	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	exon	11153995	11154133	.	+	.	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	intron	11154134	11154262	.	+	.	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	CDS	11154263	11154310	0.45	+	2	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	exon	11154263	11154310	.	+	.	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	intron	11154311	11154392	.	+	.	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	CDS	11154393	11154577	0.52	+	2	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	exon	11154393	11154577	.	+	.	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	intron	11154578	11154813	.	+	.	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	CDS	11154814	11154970	0.4	+	0	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	exon	11154814	11154970	.	+	.	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	intron	11154971	11155112	.	+	.	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	CDS	11155113	11155357	0.84	+	2	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	exon	11155113	11155357	.	+	.	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
Ledus.S2	AUGUSTUS	stop_codon	11155358	11155360	.	+	0	transcript_id "Ledus.S2G147000.t1"; gene_id "Ledus.S2G147000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8691.t1 is derived from g9721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1390193	1392522	.	-	.	Ledus.S3G016800
Ledus.S3	AUGUSTUS	transcript	1390193	1392522	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	stop_codon	1390190	1390192	.	-	0	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	CDS	1390193	1390217	0.19	-	1	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	exon	1390193	1390217	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	intron	1390218	1390296	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	CDS	1390297	1390426	0.24	-	2	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	exon	1390297	1390426	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	intron	1390427	1390538	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	CDS	1390539	1390669	0.89	-	1	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	exon	1390539	1390669	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	intron	1390670	1390741	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	CDS	1390742	1390813	1	-	1	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	exon	1390742	1390813	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	intron	1390814	1390909	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	CDS	1390910	1390967	1	-	2	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	exon	1390910	1390967	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	intron	1390968	1391065	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	CDS	1391066	1391180	1	-	0	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	exon	1391066	1391180	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	intron	1391181	1391337	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	CDS	1391338	1391412	1	-	0	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	exon	1391338	1391412	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	intron	1391413	1391534	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	CDS	1391535	1391613	1	-	1	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	exon	1391535	1391613	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	intron	1391614	1391742	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	CDS	1391743	1391813	0.51	-	0	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	exon	1391743	1391813	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	intron	1391814	1391917	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	CDS	1391918	1392148	0.33	-	0	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	exon	1391918	1392148	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	intron	1392149	1392250	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	CDS	1392251	1392382	0.78	-	0	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	exon	1392251	1392382	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	intron	1392383	1392456	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	CDS	1392457	1392522	0.96	-	0	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	exon	1392457	1392522	.	-	.	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
Ledus.S3	AUGUSTUS	start_codon	1392520	1392522	.	-	0	transcript_id "Ledus.S3G016800.t1"; gene_id "Ledus.S3G016800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1238.t1 is derived from g8099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8786258	8788168	.	-	.	Ledus.S2G112000
Ledus.S2	AUGUSTUS	transcript	8786258	8788168	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	stop_codon	8786255	8786257	.	-	0	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	CDS	8786258	8786382	0.91	-	2	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	exon	8786258	8786382	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	intron	8786383	8786503	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	CDS	8786504	8786563	1	-	2	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	exon	8786504	8786563	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	intron	8786564	8786642	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	CDS	8786643	8786722	1	-	1	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	exon	8786643	8786722	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	intron	8786723	8786819	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	CDS	8786820	8786914	1	-	0	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	exon	8786820	8786914	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	intron	8786915	8787004	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	CDS	8787005	8787121	1	-	0	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	exon	8787005	8787121	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	intron	8787122	8787246	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	CDS	8787247	8787324	1	-	0	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	exon	8787247	8787324	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	intron	8787325	8787481	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	CDS	8787482	8787551	0.73	-	1	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	exon	8787482	8787551	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	intron	8787552	8787660	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	CDS	8787661	8787770	0.77	-	0	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	exon	8787661	8787770	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	intron	8787771	8787879	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	CDS	8787880	8787981	0.95	-	0	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	exon	8787880	8787981	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	intron	8787982	8788060	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	CDS	8788061	8788168	1	-	0	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	exon	8788061	8788168	.	-	.	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
Ledus.S2	AUGUSTUS	start_codon	8788166	8788168	.	-	0	transcript_id "Ledus.S2G112000.t1"; gene_id "Ledus.S2G112000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12860.t1 is derived from g4433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	57434	59830	.	+	.	Ledus.C10G000300
Ledus.C10	AUGUSTUS	transcript	57434	59830	.	+	.	transcript_id "Ledus.C10G000300.t1"; gene_id "Ledus.C10G000300"
Ledus.C10	AUGUSTUS	start_codon	57434	57436	.	+	0	transcript_id "Ledus.C10G000300.t1"; gene_id "Ledus.C10G000300"
Ledus.C10	AUGUSTUS	CDS	57434	59474	0.51	+	0	transcript_id "Ledus.C10G000300.t1"; gene_id "Ledus.C10G000300"
Ledus.C10	AUGUSTUS	exon	57434	59474	.	+	.	transcript_id "Ledus.C10G000300.t1"; gene_id "Ledus.C10G000300"
Ledus.C10	AUGUSTUS	intron	59475	59613	.	+	.	transcript_id "Ledus.C10G000300.t1"; gene_id "Ledus.C10G000300"
Ledus.C10	AUGUSTUS	CDS	59614	59641	0.84	+	2	transcript_id "Ledus.C10G000300.t1"; gene_id "Ledus.C10G000300"
Ledus.C10	AUGUSTUS	exon	59614	59641	.	+	.	transcript_id "Ledus.C10G000300.t1"; gene_id "Ledus.C10G000300"
Ledus.C10	AUGUSTUS	intron	59642	59814	.	+	.	transcript_id "Ledus.C10G000300.t1"; gene_id "Ledus.C10G000300"
Ledus.C10	AUGUSTUS	CDS	59815	59830	0.9	+	1	transcript_id "Ledus.C10G000300.t1"; gene_id "Ledus.C10G000300"
Ledus.C10	AUGUSTUS	exon	59815	59830	.	+	.	transcript_id "Ledus.C10G000300.t1"; gene_id "Ledus.C10G000300"
Ledus.C10	AUGUSTUS	stop_codon	59831	59833	.	+	0	transcript_id "Ledus.C10G000300.t1"; gene_id "Ledus.C10G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3951.t1 is derived from g1387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13702712	13703452	.	+	.	Ledus.S1G137200
Ledus.S1	AUGUSTUS	transcript	13702712	13703452	.	+	.	transcript_id "Ledus.S1G137200.t1"; gene_id "Ledus.S1G137200"
Ledus.S1	AUGUSTUS	start_codon	13702712	13702714	.	+	0	transcript_id "Ledus.S1G137200.t1"; gene_id "Ledus.S1G137200"
Ledus.S1	AUGUSTUS	CDS	13702712	13702913	1	+	0	transcript_id "Ledus.S1G137200.t1"; gene_id "Ledus.S1G137200"
Ledus.S1	AUGUSTUS	exon	13702712	13702913	.	+	.	transcript_id "Ledus.S1G137200.t1"; gene_id "Ledus.S1G137200"
Ledus.S1	AUGUSTUS	intron	13702914	13703000	.	+	.	transcript_id "Ledus.S1G137200.t1"; gene_id "Ledus.S1G137200"
Ledus.S1	AUGUSTUS	CDS	13703001	13703452	1	+	2	transcript_id "Ledus.S1G137200.t1"; gene_id "Ledus.S1G137200"
Ledus.S1	AUGUSTUS	exon	13703001	13703452	.	+	.	transcript_id "Ledus.S1G137200.t1"; gene_id "Ledus.S1G137200"
Ledus.S1	AUGUSTUS	stop_codon	13703453	13703455	.	+	0	transcript_id "Ledus.S1G137200.t1"; gene_id "Ledus.S1G137200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10408.t1 is derived from g11438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14927364	14928295	.	+	.	Ledus.S3G188500
Ledus.S3	AUGUSTUS	transcript	14927364	14928295	.	+	.	transcript_id "Ledus.S3G188500.t1"; gene_id "Ledus.S3G188500"
Ledus.S3	AUGUSTUS	start_codon	14927364	14927366	.	+	0	transcript_id "Ledus.S3G188500.t1"; gene_id "Ledus.S3G188500"
Ledus.S3	AUGUSTUS	CDS	14927364	14927593	0.21	+	0	transcript_id "Ledus.S3G188500.t1"; gene_id "Ledus.S3G188500"
Ledus.S3	AUGUSTUS	exon	14927364	14927593	.	+	.	transcript_id "Ledus.S3G188500.t1"; gene_id "Ledus.S3G188500"
Ledus.S3	AUGUSTUS	intron	14927594	14927788	.	+	.	transcript_id "Ledus.S3G188500.t1"; gene_id "Ledus.S3G188500"
Ledus.S3	AUGUSTUS	CDS	14927789	14928051	0.36	+	1	transcript_id "Ledus.S3G188500.t1"; gene_id "Ledus.S3G188500"
Ledus.S3	AUGUSTUS	exon	14927789	14928051	.	+	.	transcript_id "Ledus.S3G188500.t1"; gene_id "Ledus.S3G188500"
Ledus.S3	AUGUSTUS	intron	14928052	14928098	.	+	.	transcript_id "Ledus.S3G188500.t1"; gene_id "Ledus.S3G188500"
Ledus.S3	AUGUSTUS	CDS	14928099	14928295	0.83	+	2	transcript_id "Ledus.S3G188500.t1"; gene_id "Ledus.S3G188500"
Ledus.S3	AUGUSTUS	exon	14928099	14928295	.	+	.	transcript_id "Ledus.S3G188500.t1"; gene_id "Ledus.S3G188500"
Ledus.S3	AUGUSTUS	stop_codon	14928296	14928298	.	+	0	transcript_id "Ledus.S3G188500.t1"; gene_id "Ledus.S3G188500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1375.t1 is derived from g8236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9590251	9592730	.	-	.	Ledus.S2G125700
Ledus.S2	AUGUSTUS	transcript	9590251	9592730	.	-	.	transcript_id "Ledus.S2G125700.t1"; gene_id "Ledus.S2G125700"
Ledus.S2	AUGUSTUS	stop_codon	9590248	9590250	.	-	0	transcript_id "Ledus.S2G125700.t1"; gene_id "Ledus.S2G125700"
Ledus.S2	AUGUSTUS	CDS	9590251	9592507	0.44	-	1	transcript_id "Ledus.S2G125700.t1"; gene_id "Ledus.S2G125700"
Ledus.S2	AUGUSTUS	exon	9590251	9592507	.	-	.	transcript_id "Ledus.S2G125700.t1"; gene_id "Ledus.S2G125700"
Ledus.S2	AUGUSTUS	intron	9592508	9592617	.	-	.	transcript_id "Ledus.S2G125700.t1"; gene_id "Ledus.S2G125700"
Ledus.S2	AUGUSTUS	CDS	9592618	9592730	0.82	-	0	transcript_id "Ledus.S2G125700.t1"; gene_id "Ledus.S2G125700"
Ledus.S2	AUGUSTUS	exon	9592618	9592730	.	-	.	transcript_id "Ledus.S2G125700.t1"; gene_id "Ledus.S2G125700"
Ledus.S2	AUGUSTUS	start_codon	9592728	9592730	.	-	0	transcript_id "Ledus.S2G125700.t1"; gene_id "Ledus.S2G125700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12920.t1 is derived from g4412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	339021	339790	.	-	.	Ledus.C9G002800
Ledus.C9	AUGUSTUS	transcript	339021	339790	.	-	.	transcript_id "Ledus.C9G002800.t1"; gene_id "Ledus.C9G002800"
Ledus.C9	AUGUSTUS	stop_codon	339018	339020	.	-	0	transcript_id "Ledus.C9G002800.t1"; gene_id "Ledus.C9G002800"
Ledus.C9	AUGUSTUS	CDS	339021	339022	1	-	2	transcript_id "Ledus.C9G002800.t1"; gene_id "Ledus.C9G002800"
Ledus.C9	AUGUSTUS	exon	339021	339022	.	-	.	transcript_id "Ledus.C9G002800.t1"; gene_id "Ledus.C9G002800"
Ledus.C9	AUGUSTUS	intron	339023	339187	.	-	.	transcript_id "Ledus.C9G002800.t1"; gene_id "Ledus.C9G002800"
Ledus.C9	AUGUSTUS	CDS	339188	339386	1	-	0	transcript_id "Ledus.C9G002800.t1"; gene_id "Ledus.C9G002800"
Ledus.C9	AUGUSTUS	exon	339188	339386	.	-	.	transcript_id "Ledus.C9G002800.t1"; gene_id "Ledus.C9G002800"
Ledus.C9	AUGUSTUS	intron	339387	339754	.	-	.	transcript_id "Ledus.C9G002800.t1"; gene_id "Ledus.C9G002800"
Ledus.C9	AUGUSTUS	CDS	339755	339790	0.84	-	0	transcript_id "Ledus.C9G002800.t1"; gene_id "Ledus.C9G002800"
Ledus.C9	AUGUSTUS	exon	339755	339790	.	-	.	transcript_id "Ledus.C9G002800.t1"; gene_id "Ledus.C9G002800"
Ledus.C9	AUGUSTUS	start_codon	339788	339790	.	-	0	transcript_id "Ledus.C9G002800.t1"; gene_id "Ledus.C9G002800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg688.t1 is derived from g7549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4192803	4193644	.	+	.	Ledus.S2G057000
Ledus.S2	AUGUSTUS	transcript	4192803	4193644	.	+	.	transcript_id "Ledus.S2G057000.t1"; gene_id "Ledus.S2G057000"
Ledus.S2	AUGUSTUS	start_codon	4192803	4192805	.	+	0	transcript_id "Ledus.S2G057000.t1"; gene_id "Ledus.S2G057000"
Ledus.S2	AUGUSTUS	CDS	4192803	4192856	1	+	0	transcript_id "Ledus.S2G057000.t1"; gene_id "Ledus.S2G057000"
Ledus.S2	AUGUSTUS	exon	4192803	4192856	.	+	.	transcript_id "Ledus.S2G057000.t1"; gene_id "Ledus.S2G057000"
Ledus.S2	AUGUSTUS	intron	4192857	4192984	.	+	.	transcript_id "Ledus.S2G057000.t1"; gene_id "Ledus.S2G057000"
Ledus.S2	AUGUSTUS	CDS	4192985	4193095	1	+	0	transcript_id "Ledus.S2G057000.t1"; gene_id "Ledus.S2G057000"
Ledus.S2	AUGUSTUS	exon	4192985	4193095	.	+	.	transcript_id "Ledus.S2G057000.t1"; gene_id "Ledus.S2G057000"
Ledus.S2	AUGUSTUS	intron	4193096	4193182	.	+	.	transcript_id "Ledus.S2G057000.t1"; gene_id "Ledus.S2G057000"
Ledus.S2	AUGUSTUS	CDS	4193183	4193644	0.94	+	0	transcript_id "Ledus.S2G057000.t1"; gene_id "Ledus.S2G057000"
Ledus.S2	AUGUSTUS	exon	4193183	4193644	.	+	.	transcript_id "Ledus.S2G057000.t1"; gene_id "Ledus.S2G057000"
Ledus.S2	AUGUSTUS	stop_codon	4193645	4193647	.	+	0	transcript_id "Ledus.S2G057000.t1"; gene_id "Ledus.S2G057000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1838.t1 is derived from g8701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12904248	12905291	.	-	.	Ledus.S2G172000
Ledus.S2	AUGUSTUS	transcript	12904248	12905291	.	-	.	transcript_id "Ledus.S2G172000.t1"; gene_id "Ledus.S2G172000"
Ledus.S2	AUGUSTUS	stop_codon	12904245	12904247	.	-	0	transcript_id "Ledus.S2G172000.t1"; gene_id "Ledus.S2G172000"
Ledus.S2	AUGUSTUS	CDS	12904248	12905291	1	-	0	transcript_id "Ledus.S2G172000.t1"; gene_id "Ledus.S2G172000"
Ledus.S2	AUGUSTUS	exon	12904248	12905291	.	-	.	transcript_id "Ledus.S2G172000.t1"; gene_id "Ledus.S2G172000"
Ledus.S2	AUGUSTUS	start_codon	12905289	12905291	.	-	0	transcript_id "Ledus.S2G172000.t1"; gene_id "Ledus.S2G172000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1958.t1 is derived from g8821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13818369	13822748	.	-	.	Ledus.S2G184000
Ledus.S2	AUGUSTUS	transcript	13818369	13822748	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	stop_codon	13818366	13818368	.	-	0	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13818369	13818671	0.69	-	0	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13818369	13818671	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13818672	13818779	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13818780	13818923	0.96	-	0	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13818780	13818923	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13818924	13819086	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13819087	13819156	1	-	1	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13819087	13819156	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13819157	13819319	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13819320	13819404	1	-	2	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13819320	13819404	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13819405	13819612	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13819613	13819772	1	-	0	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13819613	13819772	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13819773	13819871	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13819872	13819920	1	-	1	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13819872	13819920	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13819921	13820068	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13820069	13820133	1	-	0	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13820069	13820133	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13820134	13820244	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13820245	13820625	0.71	-	0	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13820245	13820625	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13820626	13820769	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13820770	13820942	0.98	-	2	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13820770	13820942	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13820943	13821096	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13821097	13821245	0.85	-	1	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13821097	13821245	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13821246	13821389	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13821390	13821493	1	-	0	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13821390	13821493	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13821494	13821603	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13821604	13821804	1	-	0	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13821604	13821804	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13821805	13821943	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13821944	13822027	1	-	0	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13821944	13822027	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13822028	13822116	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13822117	13822214	1	-	2	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13822117	13822214	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13822215	13822437	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13822438	13822557	1	-	2	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13822438	13822557	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	intron	13822558	13822714	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	CDS	13822715	13822748	0.64	-	0	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	exon	13822715	13822748	.	-	.	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
Ledus.S2	AUGUSTUS	start_codon	13822746	13822748	.	-	0	transcript_id "Ledus.S2G184000.t1"; gene_id "Ledus.S2G184000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13001.t1 is derived from g6811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2357738	2357941	.	-	.	Ledus.S6G006300
Ledus.S6	AUGUSTUS	transcript	2357738	2357941	.	-	.	transcript_id "Ledus.S6G006300.t1"; gene_id "Ledus.S6G006300"
Ledus.S6	AUGUSTUS	stop_codon	2357735	2357737	.	-	0	transcript_id "Ledus.S6G006300.t1"; gene_id "Ledus.S6G006300"
Ledus.S6	AUGUSTUS	CDS	2357738	2357941	0.78	-	0	transcript_id "Ledus.S6G006300.t1"; gene_id "Ledus.S6G006300"
Ledus.S6	AUGUSTUS	exon	2357738	2357941	.	-	.	transcript_id "Ledus.S6G006300.t1"; gene_id "Ledus.S6G006300"
Ledus.S6	AUGUSTUS	start_codon	2357939	2357941	.	-	0	transcript_id "Ledus.S6G006300.t1"; gene_id "Ledus.S6G006300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10123.t1 is derived from g11153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12944901	12946016	.	+	.	Ledus.S3G160000
Ledus.S3	AUGUSTUS	transcript	12944901	12946016	.	+	.	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	start_codon	12944901	12944903	.	+	0	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	CDS	12944901	12944968	0.5	+	0	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	exon	12944901	12944968	.	+	.	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	intron	12944969	12945088	.	+	.	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	CDS	12945089	12945149	0.5	+	1	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	exon	12945089	12945149	.	+	.	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	intron	12945150	12945284	.	+	.	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	CDS	12945285	12945327	0.7	+	0	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	exon	12945285	12945327	.	+	.	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	intron	12945328	12945424	.	+	.	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	CDS	12945425	12945573	1	+	2	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	exon	12945425	12945573	.	+	.	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	intron	12945574	12945698	.	+	.	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	CDS	12945699	12945820	0.93	+	0	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	exon	12945699	12945820	.	+	.	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	intron	12945821	12945904	.	+	.	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	CDS	12945905	12946016	0.93	+	1	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	exon	12945905	12946016	.	+	.	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
Ledus.S3	AUGUSTUS	stop_codon	12946017	12946019	.	+	0	transcript_id "Ledus.S3G160000.t1"; gene_id "Ledus.S3G160000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1516.t1 is derived from g8377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10661960	10662605	.	+	.	Ledus.S2G139800
Ledus.S2	AUGUSTUS	transcript	10661960	10662605	.	+	.	transcript_id "Ledus.S2G139800.t1"; gene_id "Ledus.S2G139800"
Ledus.S2	AUGUSTUS	start_codon	10661960	10661962	.	+	0	transcript_id "Ledus.S2G139800.t1"; gene_id "Ledus.S2G139800"
Ledus.S2	AUGUSTUS	CDS	10661960	10662031	0.68	+	0	transcript_id "Ledus.S2G139800.t1"; gene_id "Ledus.S2G139800"
Ledus.S2	AUGUSTUS	exon	10661960	10662031	.	+	.	transcript_id "Ledus.S2G139800.t1"; gene_id "Ledus.S2G139800"
Ledus.S2	AUGUSTUS	intron	10662032	10662109	.	+	.	transcript_id "Ledus.S2G139800.t1"; gene_id "Ledus.S2G139800"
Ledus.S2	AUGUSTUS	CDS	10662110	10662288	0.89	+	0	transcript_id "Ledus.S2G139800.t1"; gene_id "Ledus.S2G139800"
Ledus.S2	AUGUSTUS	exon	10662110	10662288	.	+	.	transcript_id "Ledus.S2G139800.t1"; gene_id "Ledus.S2G139800"
Ledus.S2	AUGUSTUS	intron	10662289	10662433	.	+	.	transcript_id "Ledus.S2G139800.t1"; gene_id "Ledus.S2G139800"
Ledus.S2	AUGUSTUS	CDS	10662434	10662605	0.79	+	1	transcript_id "Ledus.S2G139800.t1"; gene_id "Ledus.S2G139800"
Ledus.S2	AUGUSTUS	exon	10662434	10662605	.	+	.	transcript_id "Ledus.S2G139800.t1"; gene_id "Ledus.S2G139800"
Ledus.S2	AUGUSTUS	stop_codon	10662606	10662608	.	+	0	transcript_id "Ledus.S2G139800.t1"; gene_id "Ledus.S2G139800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9009.t1 is derived from g10039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3855004	3857358	.	+	.	Ledus.S3G048600
Ledus.S3	AUGUSTUS	transcript	3855004	3856976	.	+	.	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	start_codon	3855004	3855006	.	+	0	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3855004	3855092	1	+	0	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3855004	3855092	.	+	.	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	intron	3855093	3855191	.	+	.	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3855192	3855280	1	+	1	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3855192	3855280	.	+	.	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	intron	3855281	3855639	.	+	.	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3855640	3855859	1	+	2	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3855640	3855859	.	+	.	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	intron	3855860	3856627	.	+	.	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3856628	3856666	1	+	1	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3856628	3856666	.	+	.	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	intron	3856667	3856759	.	+	.	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3856760	3856890	1	+	1	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3856760	3856890	.	+	.	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	intron	3856891	3856971	.	+	.	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3856972	3856976	1	+	2	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3856972	3856976	.	+	.	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	stop_codon	3856977	3856979	.	+	0	transcript_id "Ledus.S3G048600.t1"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	transcript	3855004	3857358	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	start_codon	3855004	3855006	.	+	0	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3855004	3855092	1	+	0	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3855004	3855092	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	intron	3855093	3855191	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3855192	3855280	1	+	1	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3855192	3855280	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	intron	3855281	3855639	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3855640	3855859	1	+	2	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3855640	3855859	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	intron	3855860	3856627	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3856628	3856666	1	+	1	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3856628	3856666	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	intron	3856667	3856759	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3856760	3856890	1	+	1	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3856760	3856890	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	intron	3856891	3857028	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3857029	3857095	0.58	+	2	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3857029	3857095	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	intron	3857096	3857237	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	CDS	3857238	3857358	0.48	+	1	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	exon	3857238	3857358	.	+	.	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
Ledus.S3	AUGUSTUS	stop_codon	3857359	3857361	.	+	0	transcript_id "Ledus.S3G048600.t2"; gene_id "Ledus.S3G048600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3910.t1 is derived from g1346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13531267	13532899	.	+	.	Ledus.S1G133100
Ledus.S1	AUGUSTUS	transcript	13531267	13532899	.	+	.	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	start_codon	13531267	13531269	.	+	0	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	CDS	13531267	13531438	0.4	+	0	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	exon	13531267	13531438	.	+	.	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	intron	13531439	13531524	.	+	.	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	CDS	13531525	13531602	0.74	+	2	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	exon	13531525	13531602	.	+	.	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	intron	13531603	13531675	.	+	.	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	CDS	13531676	13532470	1	+	2	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	exon	13531676	13532470	.	+	.	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	intron	13532471	13532561	.	+	.	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	CDS	13532562	13532899	1	+	2	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	exon	13532562	13532899	.	+	.	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
Ledus.S1	AUGUSTUS	stop_codon	13532900	13532902	.	+	0	transcript_id "Ledus.S1G133100.t1"; gene_id "Ledus.S1G133100"
# This transcript jg9515.t2 is derived from g10545.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9516.t1 is derived from g10546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7539994	7541079	.	-	.	Ledus.S3G099300
Ledus.S3	AUGUSTUS	transcript	7539994	7541079	.	-	.	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	stop_codon	7539991	7539993	.	-	0	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	CDS	7539994	7539997	1	-	1	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	exon	7539994	7539997	.	-	.	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	intron	7539998	7540350	.	-	.	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	CDS	7540351	7540436	1	-	0	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	exon	7540351	7540436	.	-	.	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	intron	7540437	7540529	.	-	.	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	CDS	7540530	7540611	1	-	1	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	exon	7540530	7540611	.	-	.	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	intron	7540612	7540750	.	-	.	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	CDS	7540751	7540844	0.5	-	2	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	exon	7540751	7540844	.	-	.	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	intron	7540845	7541027	.	-	.	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	CDS	7541028	7541079	0.33	-	0	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	exon	7541028	7541079	.	-	.	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
Ledus.S3	AUGUSTUS	start_codon	7541077	7541079	.	-	0	transcript_id "Ledus.S3G099300.t1"; gene_id "Ledus.S3G099300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3512.t1 is derived from g947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8976884	8978132	.	+	.	Ledus.S1G093300
Ledus.S1	AUGUSTUS	transcript	8976884	8978132	.	+	.	transcript_id "Ledus.S1G093300.t1"; gene_id "Ledus.S1G093300"
Ledus.S1	AUGUSTUS	start_codon	8976884	8976886	.	+	0	transcript_id "Ledus.S1G093300.t1"; gene_id "Ledus.S1G093300"
Ledus.S1	AUGUSTUS	CDS	8976884	8977306	0.66	+	0	transcript_id "Ledus.S1G093300.t1"; gene_id "Ledus.S1G093300"
Ledus.S1	AUGUSTUS	exon	8976884	8977306	.	+	.	transcript_id "Ledus.S1G093300.t1"; gene_id "Ledus.S1G093300"
Ledus.S1	AUGUSTUS	intron	8977307	8977439	.	+	.	transcript_id "Ledus.S1G093300.t1"; gene_id "Ledus.S1G093300"
Ledus.S1	AUGUSTUS	CDS	8977440	8978132	1	+	0	transcript_id "Ledus.S1G093300.t1"; gene_id "Ledus.S1G093300"
Ledus.S1	AUGUSTUS	exon	8977440	8978132	.	+	.	transcript_id "Ledus.S1G093300.t1"; gene_id "Ledus.S1G093300"
Ledus.S1	AUGUSTUS	stop_codon	8978133	8978135	.	+	0	transcript_id "Ledus.S1G093300.t1"; gene_id "Ledus.S1G093300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11800.t1 is derived from g5419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6836281	6843732	.	-	.	Ledus.S4G095600
Ledus.S4	AUGUSTUS	transcript	6836281	6843732	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	stop_codon	6836278	6836280	.	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6836281	6836319	0.85	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6836281	6836319	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6836320	6836523	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6836524	6836785	0.66	-	1	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6836524	6836785	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6836786	6836865	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6836866	6836927	0.99	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6836866	6836927	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6836928	6837048	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6837049	6837252	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6837049	6837252	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6837253	6837396	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6837397	6837462	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6837397	6837462	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6837463	6837634	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6837635	6837760	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6837635	6837760	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6837761	6837864	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6837865	6837932	1	-	2	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6837865	6837932	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6837933	6838024	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6838025	6838088	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6838025	6838088	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6838089	6838196	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6838197	6838338	0.98	-	1	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6838197	6838338	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6838339	6838418	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6838419	6838507	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6838419	6838507	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6838508	6838652	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6838653	6838716	1	-	1	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6838653	6838716	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6838717	6838807	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6838808	6838911	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6838808	6838911	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6838912	6839083	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6839084	6839221	0.99	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6839084	6839221	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6839222	6839336	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6839337	6839459	0.77	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6839337	6839459	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6839460	6839597	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6839598	6839810	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6839598	6839810	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6839811	6839898	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6839899	6839982	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6839899	6839982	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6839983	6840177	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6840178	6840337	1	-	1	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6840178	6840337	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6840338	6840493	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6840494	6840627	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6840494	6840627	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6840628	6840899	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6840900	6840989	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6840900	6840989	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6840990	6841083	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6841084	6841242	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6841084	6841242	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6841243	6841320	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6841321	6841399	1	-	1	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6841321	6841399	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6841400	6841522	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6841523	6841620	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6841523	6841620	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6841621	6841760	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6841761	6841874	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6841761	6841874	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6841875	6841948	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6841949	6842114	1	-	1	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6841949	6842114	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6842115	6842248	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6842249	6842487	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6842249	6842487	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6842488	6842569	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6842570	6842713	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6842570	6842713	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6842714	6842857	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6842858	6842923	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6842858	6842923	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6842924	6843109	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6843110	6843319	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6843110	6843319	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	intron	6843320	6843408	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	CDS	6843409	6843732	1	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	exon	6843409	6843732	.	-	.	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
Ledus.S4	AUGUSTUS	start_codon	6843730	6843732	.	-	0	transcript_id "Ledus.S4G095600.t1"; gene_id "Ledus.S4G095600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9691.t1 is derived from g10721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9055370	9060206	.	+	.	Ledus.S3G116800
Ledus.S3	AUGUSTUS	transcript	9055370	9060206	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	start_codon	9055370	9055372	.	+	0	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9055370	9055466	0.71	+	0	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9055370	9055466	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9055467	9055855	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9055856	9055979	1	+	2	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9055856	9055979	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9055980	9056123	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9056124	9056274	1	+	1	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9056124	9056274	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9056275	9056400	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9056401	9056481	1	+	0	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9056401	9056481	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9056482	9056622	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9056623	9056734	1	+	0	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9056623	9056734	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9056735	9056853	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9056854	9056980	1	+	2	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9056854	9056980	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9056981	9057125	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9057126	9057264	1	+	1	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9057126	9057264	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9057265	9057359	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9057360	9057489	1	+	0	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9057360	9057489	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9057490	9057654	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9057655	9057705	1	+	2	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9057655	9057705	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9057706	9057797	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9057798	9057931	1	+	2	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9057798	9057931	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9057932	9058083	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9058084	9058296	1	+	0	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9058084	9058296	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9058297	9058395	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9058396	9058561	1	+	0	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9058396	9058561	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9058562	9058705	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9058706	9058850	1	+	2	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9058706	9058850	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9058851	9058935	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9058936	9059086	1	+	1	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9058936	9059086	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9059087	9059262	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9059263	9059676	0.63	+	0	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9059263	9059676	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9059677	9059784	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9059785	9059991	0.61	+	0	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9059785	9059991	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	intron	9059992	9060101	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	CDS	9060102	9060206	1	+	0	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	exon	9060102	9060206	.	+	.	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
Ledus.S3	AUGUSTUS	stop_codon	9060207	9060209	.	+	0	transcript_id "Ledus.S3G116800.t1"; gene_id "Ledus.S3G116800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11470.t1 is derived from g5088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4514375	4516285	.	+	.	Ledus.S4G062600
Ledus.S4	AUGUSTUS	transcript	4514375	4516285	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	start_codon	4514375	4514377	.	+	0	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	CDS	4514375	4514565	0.96	+	0	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	exon	4514375	4514565	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	intron	4514566	4514654	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	CDS	4514655	4514778	1	+	1	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	exon	4514655	4514778	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	intron	4514779	4514906	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	CDS	4514907	4515024	1	+	0	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	exon	4514907	4515024	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	intron	4515025	4515145	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	CDS	4515146	4515282	0.98	+	2	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	exon	4515146	4515282	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	intron	4515283	4515367	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	CDS	4515368	4515469	1	+	0	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	exon	4515368	4515469	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	intron	4515470	4515604	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	CDS	4515605	4515697	1	+	0	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	exon	4515605	4515697	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	intron	4515698	4515790	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	CDS	4515791	4515866	1	+	0	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	exon	4515791	4515866	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	intron	4515867	4516037	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	CDS	4516038	4516285	0.89	+	2	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	exon	4516038	4516285	.	+	.	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
Ledus.S4	AUGUSTUS	stop_codon	4516286	4516288	.	+	0	transcript_id "Ledus.S4G062600.t1"; gene_id "Ledus.S4G062600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6870.t1 is derived from g4314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34883608	34883898	.	-	.	Ledus.S1G429100
Ledus.S1	AUGUSTUS	transcript	34883608	34883898	.	-	.	transcript_id "Ledus.S1G429100.t1"; gene_id "Ledus.S1G429100"
Ledus.S1	AUGUSTUS	stop_codon	34883605	34883607	.	-	0	transcript_id "Ledus.S1G429100.t1"; gene_id "Ledus.S1G429100"
Ledus.S1	AUGUSTUS	CDS	34883608	34883898	0.9	-	0	transcript_id "Ledus.S1G429100.t1"; gene_id "Ledus.S1G429100"
Ledus.S1	AUGUSTUS	exon	34883608	34883898	.	-	.	transcript_id "Ledus.S1G429100.t1"; gene_id "Ledus.S1G429100"
Ledus.S1	AUGUSTUS	start_codon	34883896	34883898	.	-	0	transcript_id "Ledus.S1G429100.t1"; gene_id "Ledus.S1G429100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg605.t1 is derived from g7466.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3592034	3594807	.	-	.	Ledus.S2G048700
Ledus.S2	AUGUSTUS	transcript	3592034	3594807	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	stop_codon	3592031	3592033	.	-	0	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	CDS	3592034	3592237	0.68	-	0	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	exon	3592034	3592237	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	intron	3592238	3592322	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	CDS	3592323	3592430	1	-	0	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	exon	3592323	3592430	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	intron	3592431	3592518	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	CDS	3592519	3592698	1	-	0	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	exon	3592519	3592698	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	intron	3592699	3592829	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	CDS	3592830	3592958	1	-	0	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	exon	3592830	3592958	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	intron	3592959	3593056	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	CDS	3593057	3593338	1	-	0	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	exon	3593057	3593338	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	intron	3593339	3593560	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	CDS	3593561	3593781	1	-	2	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	exon	3593561	3593781	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	intron	3593782	3593894	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	CDS	3593895	3594807	0.98	-	0	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	exon	3593895	3594807	.	-	.	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
Ledus.S2	AUGUSTUS	start_codon	3594805	3594807	.	-	0	transcript_id "Ledus.S2G048700.t1"; gene_id "Ledus.S2G048700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg438.t1 is derived from g7299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2566622	2568028	.	+	.	Ledus.S2G032000
Ledus.S2	AUGUSTUS	transcript	2566622	2568028	.	+	.	transcript_id "Ledus.S2G032000.t1"; gene_id "Ledus.S2G032000"
Ledus.S2	AUGUSTUS	start_codon	2566622	2566624	.	+	0	transcript_id "Ledus.S2G032000.t1"; gene_id "Ledus.S2G032000"
Ledus.S2	AUGUSTUS	CDS	2566622	2567636	0.76	+	0	transcript_id "Ledus.S2G032000.t1"; gene_id "Ledus.S2G032000"
Ledus.S2	AUGUSTUS	exon	2566622	2567636	.	+	.	transcript_id "Ledus.S2G032000.t1"; gene_id "Ledus.S2G032000"
Ledus.S2	AUGUSTUS	intron	2567637	2567709	.	+	.	transcript_id "Ledus.S2G032000.t1"; gene_id "Ledus.S2G032000"
Ledus.S2	AUGUSTUS	CDS	2567710	2567892	0.6	+	2	transcript_id "Ledus.S2G032000.t1"; gene_id "Ledus.S2G032000"
Ledus.S2	AUGUSTUS	exon	2567710	2567892	.	+	.	transcript_id "Ledus.S2G032000.t1"; gene_id "Ledus.S2G032000"
Ledus.S2	AUGUSTUS	intron	2567893	2567978	.	+	.	transcript_id "Ledus.S2G032000.t1"; gene_id "Ledus.S2G032000"
Ledus.S2	AUGUSTUS	CDS	2567979	2568028	1	+	2	transcript_id "Ledus.S2G032000.t1"; gene_id "Ledus.S2G032000"
Ledus.S2	AUGUSTUS	exon	2567979	2568028	.	+	.	transcript_id "Ledus.S2G032000.t1"; gene_id "Ledus.S2G032000"
Ledus.S2	AUGUSTUS	stop_codon	2568029	2568031	.	+	0	transcript_id "Ledus.S2G032000.t1"; gene_id "Ledus.S2G032000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1781.t1 is derived from g8644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12513632	12514051	.	-	.	Ledus.S2G166300
Ledus.S2	AUGUSTUS	transcript	12513632	12514051	.	-	.	transcript_id "Ledus.S2G166300.t1"; gene_id "Ledus.S2G166300"
Ledus.S2	AUGUSTUS	stop_codon	12513629	12513631	.	-	0	transcript_id "Ledus.S2G166300.t1"; gene_id "Ledus.S2G166300"
Ledus.S2	AUGUSTUS	CDS	12513632	12513822	0.59	-	2	transcript_id "Ledus.S2G166300.t1"; gene_id "Ledus.S2G166300"
Ledus.S2	AUGUSTUS	exon	12513632	12513822	.	-	.	transcript_id "Ledus.S2G166300.t1"; gene_id "Ledus.S2G166300"
Ledus.S2	AUGUSTUS	intron	12513823	12513939	.	-	.	transcript_id "Ledus.S2G166300.t1"; gene_id "Ledus.S2G166300"
Ledus.S2	AUGUSTUS	CDS	12513940	12514051	0.56	-	0	transcript_id "Ledus.S2G166300.t1"; gene_id "Ledus.S2G166300"
Ledus.S2	AUGUSTUS	exon	12513940	12514051	.	-	.	transcript_id "Ledus.S2G166300.t1"; gene_id "Ledus.S2G166300"
Ledus.S2	AUGUSTUS	start_codon	12514049	12514051	.	-	0	transcript_id "Ledus.S2G166300.t1"; gene_id "Ledus.S2G166300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10998.t1 is derived from g4616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1053569	1055501	.	-	.	Ledus.S4G015400
Ledus.S4	AUGUSTUS	transcript	1053569	1055501	.	-	.	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	stop_codon	1053566	1053568	.	-	0	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	CDS	1053569	1054334	1	-	1	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	exon	1053569	1054334	.	-	.	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	intron	1054335	1054412	.	-	.	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	CDS	1054413	1054981	0.94	-	0	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	exon	1054413	1054981	.	-	.	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	intron	1054982	1055055	.	-	.	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	CDS	1055056	1055273	0.72	-	2	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	exon	1055056	1055273	.	-	.	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	intron	1055274	1055371	.	-	.	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	CDS	1055372	1055501	0.8	-	0	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	exon	1055372	1055501	.	-	.	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
Ledus.S4	AUGUSTUS	start_codon	1055499	1055501	.	-	0	transcript_id "Ledus.S4G015400.t1"; gene_id "Ledus.S4G015400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4375.t1 is derived from g1811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16696021	16698042	.	-	.	Ledus.S1G179600
Ledus.S1	AUGUSTUS	transcript	16696021	16698042	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	stop_codon	16696018	16696020	.	-	0	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	CDS	16696021	16696567	1	-	1	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	exon	16696021	16696567	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	intron	16696568	16696701	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	CDS	16696702	16696781	1	-	0	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	exon	16696702	16696781	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	intron	16696782	16696889	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	CDS	16696890	16697016	1	-	1	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	exon	16696890	16697016	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	intron	16697017	16697127	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	CDS	16697128	16697218	1	-	2	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	exon	16697128	16697218	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	intron	16697219	16697316	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	CDS	16697317	16697438	1	-	1	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	exon	16697317	16697438	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	intron	16697439	16697514	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	CDS	16697515	16697674	1	-	2	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	exon	16697515	16697674	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	intron	16697675	16697912	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	CDS	16697913	16698042	1	-	0	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	exon	16697913	16698042	.	-	.	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
Ledus.S1	AUGUSTUS	start_codon	16698040	16698042	.	-	0	transcript_id "Ledus.S1G179600.t1"; gene_id "Ledus.S1G179600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4565.t1 is derived from g2002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17741286	17746719	.	+	.	Ledus.S1G198600
Ledus.S1	AUGUSTUS	transcript	17741286	17746719	.	+	.	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	start_codon	17741286	17741288	.	+	0	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	CDS	17741286	17741670	1	+	0	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	exon	17741286	17741670	.	+	.	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	intron	17741671	17741758	.	+	.	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	CDS	17741759	17746085	1	+	2	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	exon	17741759	17746085	.	+	.	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	intron	17746086	17746195	.	+	.	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	CDS	17746196	17746322	0.99	+	1	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	exon	17746196	17746322	.	+	.	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	intron	17746323	17746426	.	+	.	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	CDS	17746427	17746528	0.97	+	0	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	exon	17746427	17746528	.	+	.	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	intron	17746529	17746641	.	+	.	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	CDS	17746642	17746719	0.92	+	0	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	exon	17746642	17746719	.	+	.	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
Ledus.S1	AUGUSTUS	stop_codon	17746720	17746722	.	+	0	transcript_id "Ledus.S1G198600.t1"; gene_id "Ledus.S1G198600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8606.t1 is derived from g9636.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	533053	535372	.	-	.	Ledus.S3G008300
Ledus.S3	AUGUSTUS	transcript	533053	535372	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	stop_codon	533050	533052	.	-	0	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	CDS	533053	533148	1	-	0	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	exon	533053	533148	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	intron	533149	533251	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	CDS	533252	533405	1	-	1	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	exon	533252	533405	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	intron	533406	533495	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	CDS	533496	533561	1	-	1	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	exon	533496	533561	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	intron	533562	533653	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	CDS	533654	533751	1	-	0	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	exon	533654	533751	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	intron	533752	533861	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	CDS	533862	533939	1	-	0	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	exon	533862	533939	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	intron	533940	534017	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	CDS	534018	534080	1	-	0	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	exon	534018	534080	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	intron	534081	534168	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	CDS	534169	534298	1	-	1	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	exon	534169	534298	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	intron	534299	534409	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	CDS	534410	534633	1	-	0	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	exon	534410	534633	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	intron	534634	534742	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	CDS	534743	534868	1	-	0	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	exon	534743	534868	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	intron	534869	534945	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	CDS	534946	535083	1	-	0	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	exon	534946	535083	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	intron	535084	535351	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	CDS	535352	535372	0.88	-	0	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	exon	535352	535372	.	-	.	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
Ledus.S3	AUGUSTUS	start_codon	535370	535372	.	-	0	transcript_id "Ledus.S3G008300.t1"; gene_id "Ledus.S3G008300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11836.t1 is derived from g5455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7201184	7201924	.	+	.	Ledus.S4G099200
Ledus.S4	AUGUSTUS	transcript	7201184	7201924	.	+	.	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	start_codon	7201184	7201186	.	+	0	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	CDS	7201184	7201325	0.99	+	0	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	exon	7201184	7201325	.	+	.	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	intron	7201326	7201402	.	+	.	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	CDS	7201403	7201471	1	+	2	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	exon	7201403	7201471	.	+	.	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	intron	7201472	7201552	.	+	.	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	CDS	7201553	7201659	1	+	2	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	exon	7201553	7201659	.	+	.	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	intron	7201660	7201756	.	+	.	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	CDS	7201757	7201924	0.96	+	0	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	exon	7201757	7201924	.	+	.	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
Ledus.S4	AUGUSTUS	stop_codon	7201925	7201927	.	+	0	transcript_id "Ledus.S4G099200.t1"; gene_id "Ledus.S4G099200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7766.t1 is derived from g12437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6280668	6280874	.	-	.	Ledus.S5G054400
Ledus.S5	AUGUSTUS	transcript	6280668	6280874	.	-	.	transcript_id "Ledus.S5G054400.t1"; gene_id "Ledus.S5G054400"
Ledus.S5	AUGUSTUS	stop_codon	6280665	6280667	.	-	0	transcript_id "Ledus.S5G054400.t1"; gene_id "Ledus.S5G054400"
Ledus.S5	AUGUSTUS	CDS	6280668	6280874	0.76	-	0	transcript_id "Ledus.S5G054400.t1"; gene_id "Ledus.S5G054400"
Ledus.S5	AUGUSTUS	exon	6280668	6280874	.	-	.	transcript_id "Ledus.S5G054400.t1"; gene_id "Ledus.S5G054400"
Ledus.S5	AUGUSTUS	start_codon	6280872	6280874	.	-	0	transcript_id "Ledus.S5G054400.t1"; gene_id "Ledus.S5G054400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10295.t1 is derived from g11325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14108245	14110171	.	-	.	Ledus.S3G177200
Ledus.S3	AUGUSTUS	transcript	14108245	14110171	.	-	.	transcript_id "Ledus.S3G177200.t1"; gene_id "Ledus.S3G177200"
Ledus.S3	AUGUSTUS	stop_codon	14108242	14108244	.	-	0	transcript_id "Ledus.S3G177200.t1"; gene_id "Ledus.S3G177200"
Ledus.S3	AUGUSTUS	CDS	14108245	14108283	1	-	0	transcript_id "Ledus.S3G177200.t1"; gene_id "Ledus.S3G177200"
Ledus.S3	AUGUSTUS	exon	14108245	14108283	.	-	.	transcript_id "Ledus.S3G177200.t1"; gene_id "Ledus.S3G177200"
Ledus.S3	AUGUSTUS	intron	14108284	14108368	.	-	.	transcript_id "Ledus.S3G177200.t1"; gene_id "Ledus.S3G177200"
Ledus.S3	AUGUSTUS	CDS	14108369	14110171	0.39	-	0	transcript_id "Ledus.S3G177200.t1"; gene_id "Ledus.S3G177200"
Ledus.S3	AUGUSTUS	exon	14108369	14110171	.	-	.	transcript_id "Ledus.S3G177200.t1"; gene_id "Ledus.S3G177200"
Ledus.S3	AUGUSTUS	start_codon	14110169	14110171	.	-	0	transcript_id "Ledus.S3G177200.t1"; gene_id "Ledus.S3G177200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3090.t1 is derived from g525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5812439	5814112	.	-	.	Ledus.S1G051100
Ledus.S1	AUGUSTUS	transcript	5812439	5814112	.	-	.	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	stop_codon	5812436	5812438	.	-	0	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	CDS	5812439	5812464	0.71	-	2	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	exon	5812439	5812464	.	-	.	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	intron	5812465	5812689	.	-	.	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	CDS	5812690	5812762	0.85	-	0	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	exon	5812690	5812762	.	-	.	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	intron	5812763	5813058	.	-	.	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	CDS	5813059	5813182	0.77	-	1	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	exon	5813059	5813182	.	-	.	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	intron	5813183	5813632	.	-	.	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	CDS	5813633	5813715	0.89	-	0	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	exon	5813633	5813715	.	-	.	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	intron	5813716	5813864	.	-	.	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	CDS	5813865	5813966	0.87	-	0	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	exon	5813865	5813966	.	-	.	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	intron	5813967	5814079	.	-	.	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	CDS	5814080	5814112	0.48	-	0	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	exon	5814080	5814112	.	-	.	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
Ledus.S1	AUGUSTUS	start_codon	5814110	5814112	.	-	0	transcript_id "Ledus.S1G051100.t1"; gene_id "Ledus.S1G051100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5863.t1 is derived from g3305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27437658	27439205	.	-	.	Ledus.S1G328400
Ledus.S1	AUGUSTUS	transcript	27437658	27439205	.	-	.	transcript_id "Ledus.S1G328400.t1"; gene_id "Ledus.S1G328400"
Ledus.S1	AUGUSTUS	stop_codon	27437655	27437657	.	-	0	transcript_id "Ledus.S1G328400.t1"; gene_id "Ledus.S1G328400"
Ledus.S1	AUGUSTUS	CDS	27437658	27439205	1	-	0	transcript_id "Ledus.S1G328400.t1"; gene_id "Ledus.S1G328400"
Ledus.S1	AUGUSTUS	exon	27437658	27439205	.	-	.	transcript_id "Ledus.S1G328400.t1"; gene_id "Ledus.S1G328400"
Ledus.S1	AUGUSTUS	start_codon	27439203	27439205	.	-	0	transcript_id "Ledus.S1G328400.t1"; gene_id "Ledus.S1G328400"
Ledus.S1	AUGUSTUS	transcript	27437926	27439205	.	-	.	transcript_id "Ledus.S1G328400.t2"; gene_id "Ledus.S1G328400"
Ledus.S1	AUGUSTUS	stop_codon	27437923	27437925	.	-	0	transcript_id "Ledus.S1G328400.t2"; gene_id "Ledus.S1G328400"
Ledus.S1	AUGUSTUS	CDS	27437926	27437969	0.38	-	2	transcript_id "Ledus.S1G328400.t2"; gene_id "Ledus.S1G328400"
Ledus.S1	AUGUSTUS	exon	27437926	27437969	.	-	.	transcript_id "Ledus.S1G328400.t2"; gene_id "Ledus.S1G328400"
Ledus.S1	AUGUSTUS	intron	27437970	27438031	.	-	.	transcript_id "Ledus.S1G328400.t2"; gene_id "Ledus.S1G328400"
Ledus.S1	AUGUSTUS	CDS	27438032	27439205	0.4	-	0	transcript_id "Ledus.S1G328400.t2"; gene_id "Ledus.S1G328400"
Ledus.S1	AUGUSTUS	exon	27438032	27439205	.	-	.	transcript_id "Ledus.S1G328400.t2"; gene_id "Ledus.S1G328400"
Ledus.S1	AUGUSTUS	start_codon	27439203	27439205	.	-	0	transcript_id "Ledus.S1G328400.t2"; gene_id "Ledus.S1G328400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5981.t1 is derived from g3424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28148823	28156323	.	+	.	Ledus.S1G340200
Ledus.S1	AUGUSTUS	transcript	28148823	28156323	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	start_codon	28148823	28148825	.	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28148823	28148913	0.95	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28148823	28148913	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28148914	28149013	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28149014	28149132	1	+	2	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28149014	28149132	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28149133	28149323	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28149324	28149432	1	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28149324	28149432	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28149433	28149517	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28149518	28149582	1	+	2	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28149518	28149582	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28149583	28149663	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28149664	28149702	1	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28149664	28149702	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28149703	28149845	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28149846	28149942	1	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28149846	28149942	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28149943	28150036	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28150037	28150121	1	+	2	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28150037	28150121	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28150122	28150219	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28150220	28150283	1	+	1	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28150220	28150283	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28150284	28150452	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28150453	28150529	1	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28150453	28150529	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28150530	28150615	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28150616	28150679	0.82	+	1	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28150616	28150679	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28150680	28150780	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28150781	28150857	0.97	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28150781	28150857	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28150858	28150944	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28150945	28151029	1	+	1	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28150945	28151029	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28151030	28151116	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28151117	28151185	1	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28151117	28151185	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28151186	28151284	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28151285	28151352	1	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28151285	28151352	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28151353	28151435	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28151436	28151484	1	+	1	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28151436	28151484	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28151485	28151563	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28151564	28151958	0.97	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28151564	28151958	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28151959	28152167	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28152168	28152531	0.97	+	1	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28152168	28152531	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28152532	28152641	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28152642	28152701	1	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28152642	28152701	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28152702	28152782	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28152783	28152833	1	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28152783	28152833	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28152834	28152915	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28152916	28152981	1	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28152916	28152981	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28152982	28153112	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28153113	28153208	1	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28153113	28153208	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28153209	28153300	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28153301	28153408	0.99	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28153301	28153408	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28153409	28153516	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28153517	28153623	0.98	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28153517	28153623	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28153624	28153739	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28153740	28153939	0.98	+	1	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28153740	28153939	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28153940	28154027	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28154028	28154068	1	+	2	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28154028	28154068	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28154069	28154176	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28154177	28154264	0.99	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28154177	28154264	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28154265	28154371	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28154372	28154458	0.99	+	2	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28154372	28154458	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28154459	28154614	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28154615	28154669	0.99	+	2	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28154615	28154669	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28154670	28154774	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28154775	28154841	0.99	+	1	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28154775	28154841	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28154842	28154945	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28154946	28155045	1	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28154946	28155045	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28155046	28155136	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28155137	28155198	1	+	2	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28155137	28155198	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28155199	28155335	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28155336	28155507	0.91	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28155336	28155507	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28155508	28155774	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28155775	28155929	0.66	+	2	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28155775	28155929	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28155930	28156032	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28156033	28156323	0.91	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28156033	28156323	.	+	.	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	stop_codon	28156324	28156326	.	+	0	transcript_id "Ledus.S1G340200.t1"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	transcript	28148823	28156323	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	start_codon	28148823	28148825	.	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28148823	28148913	0.97	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28148823	28148913	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28148914	28149013	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28149014	28149132	1	+	2	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28149014	28149132	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28149133	28149323	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28149324	28149432	1	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28149324	28149432	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28149433	28149517	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28149518	28149582	1	+	2	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28149518	28149582	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28149583	28149663	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28149664	28149702	1	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28149664	28149702	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28149703	28149845	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28149846	28149942	1	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28149846	28149942	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28149943	28150036	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28150037	28150121	1	+	2	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28150037	28150121	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28150122	28150219	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28150220	28150295	1	+	1	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28150220	28150295	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28150296	28150452	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28150453	28150529	1	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28150453	28150529	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28150530	28150615	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28150616	28150679	0.83	+	1	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28150616	28150679	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28150680	28150780	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28150781	28150857	0.96	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28150781	28150857	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28150858	28150944	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28150945	28151029	1	+	1	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28150945	28151029	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28151030	28151116	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28151117	28151185	1	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28151117	28151185	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28151186	28151284	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28151285	28151352	1	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28151285	28151352	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28151353	28151435	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28151436	28151484	1	+	1	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28151436	28151484	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28151485	28151563	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28151564	28151958	0.97	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28151564	28151958	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28151959	28152167	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28152168	28152531	0.92	+	1	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28152168	28152531	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28152532	28152641	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28152642	28152701	1	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28152642	28152701	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28152702	28152782	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28152783	28152833	1	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28152783	28152833	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28152834	28152915	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28152916	28152981	1	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28152916	28152981	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28152982	28153112	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28153113	28153208	1	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28153113	28153208	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28153209	28153300	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28153301	28153408	1	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28153301	28153408	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28153409	28153516	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28153517	28153623	0.98	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28153517	28153623	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28153624	28153739	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28153740	28153939	0.98	+	1	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28153740	28153939	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28153940	28154027	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28154028	28154068	1	+	2	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28154028	28154068	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28154069	28154176	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28154177	28154264	0.98	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28154177	28154264	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28154265	28154371	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28154372	28154458	0.96	+	2	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28154372	28154458	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28154459	28154614	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28154615	28154669	0.98	+	2	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28154615	28154669	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28154670	28154774	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28154775	28154841	0.98	+	1	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28154775	28154841	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28154842	28154945	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28154946	28155045	1	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28154946	28155045	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28155046	28155136	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28155137	28155198	1	+	2	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28155137	28155198	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28155199	28155335	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28155336	28155507	0.93	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28155336	28155507	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28155508	28155774	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28155775	28155929	0.64	+	2	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28155775	28155929	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	intron	28155930	28156032	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	CDS	28156033	28156323	0.93	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	exon	28156033	28156323	.	+	.	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
Ledus.S1	AUGUSTUS	stop_codon	28156324	28156326	.	+	0	transcript_id "Ledus.S1G340200.t2"; gene_id "Ledus.S1G340200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6658.t1 is derived from g4101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32942249	32943079	.	-	.	Ledus.S1G407900
Ledus.S1	AUGUSTUS	transcript	32942249	32943079	.	-	.	transcript_id "Ledus.S1G407900.t1"; gene_id "Ledus.S1G407900"
Ledus.S1	AUGUSTUS	stop_codon	32942246	32942248	.	-	0	transcript_id "Ledus.S1G407900.t1"; gene_id "Ledus.S1G407900"
Ledus.S1	AUGUSTUS	CDS	32942249	32943079	0.55	-	0	transcript_id "Ledus.S1G407900.t1"; gene_id "Ledus.S1G407900"
Ledus.S1	AUGUSTUS	exon	32942249	32943079	.	-	.	transcript_id "Ledus.S1G407900.t1"; gene_id "Ledus.S1G407900"
Ledus.S1	AUGUSTUS	start_codon	32943077	32943079	.	-	0	transcript_id "Ledus.S1G407900.t1"; gene_id "Ledus.S1G407900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7524.t1 is derived from g12195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3595622	3598317	.	+	.	Ledus.S5G030200
Ledus.S5	AUGUSTUS	transcript	3595622	3598317	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	start_codon	3595622	3595624	.	+	0	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	CDS	3595622	3595738	1	+	0	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	exon	3595622	3595738	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	intron	3595739	3596382	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	CDS	3596383	3596505	1	+	0	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	exon	3596383	3596505	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	intron	3596506	3596617	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	CDS	3596618	3596668	1	+	0	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	exon	3596618	3596668	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	intron	3596669	3596843	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	CDS	3596844	3596915	1	+	0	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	exon	3596844	3596915	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	intron	3596916	3597044	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	CDS	3597045	3597158	1	+	0	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	exon	3597045	3597158	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	intron	3597159	3597378	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	CDS	3597379	3597440	1	+	0	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	exon	3597379	3597440	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	intron	3597441	3597672	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	CDS	3597673	3597733	1	+	1	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	exon	3597673	3597733	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	intron	3597734	3597918	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	CDS	3597919	3597975	1	+	0	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	exon	3597919	3597975	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	intron	3597976	3598062	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	CDS	3598063	3598125	1	+	0	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	exon	3598063	3598125	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	intron	3598126	3598242	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	CDS	3598243	3598317	0.98	+	0	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	exon	3598243	3598317	.	+	.	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
Ledus.S5	AUGUSTUS	stop_codon	3598318	3598320	.	+	0	transcript_id "Ledus.S5G030200.t1"; gene_id "Ledus.S5G030200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11020.t1 is derived from g4638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1191898	1194774	.	+	.	Ledus.S4G017600
Ledus.S4	AUGUSTUS	transcript	1191898	1194774	.	+	.	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	start_codon	1191898	1191900	.	+	0	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	CDS	1191898	1191921	0.9	+	0	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	exon	1191898	1191921	.	+	.	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	intron	1191922	1192025	.	+	.	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	CDS	1192026	1192119	0.74	+	0	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	exon	1192026	1192119	.	+	.	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	intron	1192120	1192483	.	+	.	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	CDS	1192484	1192545	0.93	+	2	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	exon	1192484	1192545	.	+	.	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	intron	1192546	1192658	.	+	.	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	CDS	1192659	1192739	0.52	+	0	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	exon	1192659	1192739	.	+	.	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	intron	1192740	1193037	.	+	.	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	CDS	1193038	1194774	0.33	+	0	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	exon	1193038	1194774	.	+	.	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
Ledus.S4	AUGUSTUS	stop_codon	1194775	1194777	.	+	0	transcript_id "Ledus.S4G017600.t1"; gene_id "Ledus.S4G017600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13135.t1 is derived from g6945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6780640	6781167	.	-	.	Ledus.S6G019700
Ledus.S6	AUGUSTUS	transcript	6780640	6781167	.	-	.	transcript_id "Ledus.S6G019700.t1"; gene_id "Ledus.S6G019700"
Ledus.S6	AUGUSTUS	stop_codon	6780637	6780639	.	-	0	transcript_id "Ledus.S6G019700.t1"; gene_id "Ledus.S6G019700"
Ledus.S6	AUGUSTUS	CDS	6780640	6781167	0.73	-	0	transcript_id "Ledus.S6G019700.t1"; gene_id "Ledus.S6G019700"
Ledus.S6	AUGUSTUS	exon	6780640	6781167	.	-	.	transcript_id "Ledus.S6G019700.t1"; gene_id "Ledus.S6G019700"
Ledus.S6	AUGUSTUS	start_codon	6781165	6781167	.	-	0	transcript_id "Ledus.S6G019700.t1"; gene_id "Ledus.S6G019700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg719.t1 is derived from g7580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4457102	4459073	.	-	.	Ledus.S2G060100
Ledus.S2	AUGUSTUS	transcript	4457102	4459073	.	-	.	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	stop_codon	4457099	4457101	.	-	0	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	CDS	4457102	4457321	1	-	1	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	exon	4457102	4457321	.	-	.	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	intron	4457322	4457446	.	-	.	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	CDS	4457447	4457542	1	-	1	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	exon	4457447	4457542	.	-	.	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	intron	4457543	4457629	.	-	.	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	CDS	4457630	4457754	1	-	0	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	exon	4457630	4457754	.	-	.	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	intron	4457755	4457897	.	-	.	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	CDS	4457898	4458050	1	-	0	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	exon	4457898	4458050	.	-	.	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	intron	4458051	4458176	.	-	.	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	CDS	4458177	4458506	0.99	-	0	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	exon	4458177	4458506	.	-	.	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	intron	4458507	4458728	.	-	.	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	CDS	4458729	4459073	1	-	0	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	exon	4458729	4459073	.	-	.	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
Ledus.S2	AUGUSTUS	start_codon	4459071	4459073	.	-	0	transcript_id "Ledus.S2G060100.t1"; gene_id "Ledus.S2G060100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1540.t1 is derived from g8401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10851158	10851651	.	-	.	Ledus.S2G142200
Ledus.S2	AUGUSTUS	transcript	10851158	10851651	.	-	.	transcript_id "Ledus.S2G142200.t1"; gene_id "Ledus.S2G142200"
Ledus.S2	AUGUSTUS	stop_codon	10851155	10851157	.	-	0	transcript_id "Ledus.S2G142200.t1"; gene_id "Ledus.S2G142200"
Ledus.S2	AUGUSTUS	CDS	10851158	10851257	0.86	-	1	transcript_id "Ledus.S2G142200.t1"; gene_id "Ledus.S2G142200"
Ledus.S2	AUGUSTUS	exon	10851158	10851257	.	-	.	transcript_id "Ledus.S2G142200.t1"; gene_id "Ledus.S2G142200"
Ledus.S2	AUGUSTUS	intron	10851258	10851466	.	-	.	transcript_id "Ledus.S2G142200.t1"; gene_id "Ledus.S2G142200"
Ledus.S2	AUGUSTUS	CDS	10851467	10851651	0.97	-	0	transcript_id "Ledus.S2G142200.t1"; gene_id "Ledus.S2G142200"
Ledus.S2	AUGUSTUS	exon	10851467	10851651	.	-	.	transcript_id "Ledus.S2G142200.t1"; gene_id "Ledus.S2G142200"
Ledus.S2	AUGUSTUS	start_codon	10851649	10851651	.	-	0	transcript_id "Ledus.S2G142200.t1"; gene_id "Ledus.S2G142200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11346.t1 is derived from g4964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3710116	3711559	.	-	.	Ledus.S4G050200
Ledus.S4	AUGUSTUS	transcript	3710116	3711559	.	-	.	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	stop_codon	3710113	3710115	.	-	0	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	CDS	3710116	3710142	0.54	-	0	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	exon	3710116	3710142	.	-	.	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	intron	3710143	3710563	.	-	.	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	CDS	3710564	3710674	1	-	0	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	exon	3710564	3710674	.	-	.	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	intron	3710675	3710811	.	-	.	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	CDS	3710812	3710932	1	-	1	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	exon	3710812	3710932	.	-	.	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	intron	3710933	3711536	.	-	.	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	CDS	3711537	3711559	0.6	-	0	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	exon	3711537	3711559	.	-	.	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
Ledus.S4	AUGUSTUS	start_codon	3711557	3711559	.	-	0	transcript_id "Ledus.S4G050200.t1"; gene_id "Ledus.S4G050200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7352.t1 is derived from g12023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1414478	1415269	.	+	.	Ledus.S5G013000
Ledus.S5	AUGUSTUS	transcript	1414478	1415269	.	+	.	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	start_codon	1414478	1414480	.	+	0	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	CDS	1414478	1414480	1	+	0	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	exon	1414478	1414480	.	+	.	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	intron	1414481	1414624	.	+	.	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	CDS	1414625	1414702	1	+	0	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	exon	1414625	1414702	.	+	.	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	intron	1414703	1414786	.	+	.	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	CDS	1414787	1414921	1	+	0	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	exon	1414787	1414921	.	+	.	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	intron	1414922	1415158	.	+	.	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	CDS	1415159	1415269	0.98	+	0	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	exon	1415159	1415269	.	+	.	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
Ledus.S5	AUGUSTUS	stop_codon	1415270	1415272	.	+	0	transcript_id "Ledus.S5G013000.t1"; gene_id "Ledus.S5G013000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3559.t1 is derived from g995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9581831	9583635	.	+	.	Ledus.S1G098000
Ledus.S1	AUGUSTUS	transcript	9581831	9583635	.	+	.	transcript_id "Ledus.S1G098000.t1"; gene_id "Ledus.S1G098000"
Ledus.S1	AUGUSTUS	start_codon	9581831	9581833	.	+	0	transcript_id "Ledus.S1G098000.t1"; gene_id "Ledus.S1G098000"
Ledus.S1	AUGUSTUS	CDS	9581831	9582575	0.85	+	0	transcript_id "Ledus.S1G098000.t1"; gene_id "Ledus.S1G098000"
Ledus.S1	AUGUSTUS	exon	9581831	9582575	.	+	.	transcript_id "Ledus.S1G098000.t1"; gene_id "Ledus.S1G098000"
Ledus.S1	AUGUSTUS	intron	9582576	9582658	.	+	.	transcript_id "Ledus.S1G098000.t1"; gene_id "Ledus.S1G098000"
Ledus.S1	AUGUSTUS	CDS	9582659	9583077	0.92	+	2	transcript_id "Ledus.S1G098000.t1"; gene_id "Ledus.S1G098000"
Ledus.S1	AUGUSTUS	exon	9582659	9583077	.	+	.	transcript_id "Ledus.S1G098000.t1"; gene_id "Ledus.S1G098000"
Ledus.S1	AUGUSTUS	intron	9583078	9583194	.	+	.	transcript_id "Ledus.S1G098000.t1"; gene_id "Ledus.S1G098000"
Ledus.S1	AUGUSTUS	CDS	9583195	9583635	0.67	+	0	transcript_id "Ledus.S1G098000.t1"; gene_id "Ledus.S1G098000"
Ledus.S1	AUGUSTUS	exon	9583195	9583635	.	+	.	transcript_id "Ledus.S1G098000.t1"; gene_id "Ledus.S1G098000"
Ledus.S1	AUGUSTUS	stop_codon	9583636	9583638	.	+	0	transcript_id "Ledus.S1G098000.t1"; gene_id "Ledus.S1G098000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11650.t1 is derived from g5269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5735749	5737464	.	-	.	Ledus.S4G080600
Ledus.S4	AUGUSTUS	transcript	5735749	5737464	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	stop_codon	5735746	5735748	.	-	0	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	CDS	5735749	5735762	1	-	2	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	exon	5735749	5735762	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	intron	5735763	5735849	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	CDS	5735850	5735858	0.41	-	2	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	exon	5735850	5735858	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	intron	5735859	5735931	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	CDS	5735932	5736298	0.4	-	0	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	exon	5735932	5736298	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	intron	5736299	5736400	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	CDS	5736401	5736544	0.98	-	0	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	exon	5736401	5736544	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	intron	5736545	5736641	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	CDS	5736642	5736764	1	-	0	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	exon	5736642	5736764	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	intron	5736765	5736855	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	CDS	5736856	5737047	1	-	0	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	exon	5736856	5737047	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	intron	5737048	5737191	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	CDS	5737192	5737285	1	-	1	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	exon	5737192	5737285	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	intron	5737286	5737456	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	CDS	5737457	5737464	0.89	-	0	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	exon	5737457	5737464	.	-	.	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
Ledus.S4	AUGUSTUS	start_codon	5737462	5737464	.	-	0	transcript_id "Ledus.S4G080600.t1"; gene_id "Ledus.S4G080600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9564.t1 is derived from g10594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7821673	7830596	.	-	.	Ledus.S3G104100
Ledus.S3	AUGUSTUS	transcript	7821673	7830596	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	stop_codon	7821670	7821672	.	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7821673	7821738	1	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7821673	7821738	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7821739	7821822	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7821823	7821894	1	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7821823	7821894	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7821895	7821986	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7821987	7822109	0.99	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7821987	7822109	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7822110	7822208	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7822209	7822355	0.77	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7822209	7822355	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7822356	7822565	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7822566	7822706	0.65	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7822566	7822706	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7822707	7822802	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7822803	7822943	1	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7822803	7822943	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7822944	7823028	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7823029	7823121	0.99	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7823029	7823121	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7823122	7823243	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7823244	7823369	0.79	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7823244	7823369	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7823370	7823461	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7823462	7823613	0.83	-	2	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7823462	7823613	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7823614	7823690	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7823691	7823766	0.98	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7823691	7823766	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7823767	7823870	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7823871	7824038	0.99	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7823871	7824038	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7824039	7824123	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7824124	7824228	1	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7824124	7824228	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7824229	7824319	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7824320	7824392	1	-	1	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7824320	7824392	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7824393	7824512	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7824513	7824637	1	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7824513	7824637	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7824638	7824879	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7824880	7824954	1	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7824880	7824954	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7824955	7825049	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7825050	7825274	0.94	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7825050	7825274	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7825275	7825409	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7825410	7825547	1	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7825410	7825547	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7825548	7825704	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7825705	7825761	0.99	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7825705	7825761	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7825762	7825846	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7825847	7825957	0.97	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7825847	7825957	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7825958	7826049	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7826050	7826107	1	-	1	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7826050	7826107	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7826108	7826196	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7826197	7826252	1	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7826197	7826252	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7826253	7826387	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7826388	7826528	0.91	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7826388	7826528	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7826529	7826623	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7826624	7826677	1	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7826624	7826677	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7826678	7826815	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7826816	7826898	1	-	2	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7826816	7826898	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7826899	7827051	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7827052	7827148	1	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7827052	7827148	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7827149	7827269	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7827270	7827380	1	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7827270	7827380	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7827381	7827528	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7827529	7827661	1	-	1	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7827529	7827661	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7827662	7827774	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7827775	7827836	0.98	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7827775	7827836	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7827837	7827951	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7827952	7828005	0.99	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7827952	7828005	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7828006	7828108	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7828109	7828660	0.97	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7828109	7828660	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7828661	7828803	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7828804	7828878	1	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7828804	7828878	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7828879	7829017	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7829018	7829266	0.95	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7829018	7829266	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7829267	7829362	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7829363	7829587	0.91	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7829363	7829587	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7829588	7829833	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7829834	7829988	1	-	2	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7829834	7829988	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7829989	7830082	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7830083	7830277	1	-	2	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7830083	7830277	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	intron	7830278	7830358	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	CDS	7830359	7830596	0.77	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	exon	7830359	7830596	.	-	.	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
Ledus.S3	AUGUSTUS	start_codon	7830594	7830596	.	-	0	transcript_id "Ledus.S3G104100.t1"; gene_id "Ledus.S3G104100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1698.t1 is derived from g8559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11951001	11953978	.	-	.	Ledus.S2G158000
Ledus.S2	AUGUSTUS	transcript	11951001	11953978	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	stop_codon	11950998	11951000	.	-	0	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	CDS	11951001	11951546	0.97	-	0	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	exon	11951001	11951546	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	intron	11951547	11951659	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	CDS	11951660	11951829	1	-	2	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	exon	11951660	11951829	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	intron	11951830	11952324	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	CDS	11952325	11952427	1	-	0	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	exon	11952325	11952427	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	intron	11952428	11952623	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	CDS	11952624	11952787	0.99	-	2	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	exon	11952624	11952787	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	intron	11952788	11952896	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	CDS	11952897	11952940	1	-	1	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	exon	11952897	11952940	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	intron	11952941	11953103	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	CDS	11953104	11953386	0.52	-	2	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	exon	11953104	11953386	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	intron	11953387	11953568	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	CDS	11953569	11953586	0.53	-	2	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	exon	11953569	11953586	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	intron	11953587	11953773	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	CDS	11953774	11953786	0.55	-	0	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	exon	11953774	11953786	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	intron	11953787	11953894	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	CDS	11953895	11953978	0.23	-	0	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	exon	11953895	11953978	.	-	.	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
Ledus.S2	AUGUSTUS	start_codon	11953976	11953978	.	-	0	transcript_id "Ledus.S2G158000.t1"; gene_id "Ledus.S2G158000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10320.t1 is derived from g11350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14221335	14223586	.	-	.	Ledus.S3G179700
Ledus.S3	AUGUSTUS	transcript	14221335	14223586	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	stop_codon	14221332	14221334	.	-	0	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	CDS	14221335	14222012	1	-	0	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	exon	14221335	14222012	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	intron	14222013	14222102	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	CDS	14222103	14222123	1	-	0	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	exon	14222103	14222123	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	intron	14222124	14222222	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	CDS	14222223	14222630	0.47	-	0	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	exon	14222223	14222630	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	intron	14222631	14222715	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	CDS	14222716	14222783	1	-	2	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	exon	14222716	14222783	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	intron	14222784	14222859	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	CDS	14222860	14222910	1	-	2	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	exon	14222860	14222910	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	intron	14222911	14222991	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	CDS	14222992	14223142	1	-	0	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	exon	14222992	14223142	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	intron	14223143	14223241	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	CDS	14223242	14223305	1	-	1	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	exon	14223242	14223305	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	intron	14223306	14223380	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	CDS	14223381	14223586	0.8	-	0	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	exon	14223381	14223586	.	-	.	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
Ledus.S3	AUGUSTUS	start_codon	14223584	14223586	.	-	0	transcript_id "Ledus.S3G179700.t1"; gene_id "Ledus.S3G179700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9582.t1 is derived from g10612.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7980996	7982455	.	-	.	Ledus.S3G105900
Ledus.S3	AUGUSTUS	transcript	7980996	7982455	.	-	.	transcript_id "Ledus.S3G105900.t1"; gene_id "Ledus.S3G105900"
Ledus.S3	AUGUSTUS	stop_codon	7980993	7980995	.	-	0	transcript_id "Ledus.S3G105900.t1"; gene_id "Ledus.S3G105900"
Ledus.S3	AUGUSTUS	CDS	7980996	7981353	1	-	1	transcript_id "Ledus.S3G105900.t1"; gene_id "Ledus.S3G105900"
Ledus.S3	AUGUSTUS	exon	7980996	7981353	.	-	.	transcript_id "Ledus.S3G105900.t1"; gene_id "Ledus.S3G105900"
Ledus.S3	AUGUSTUS	intron	7981354	7981479	.	-	.	transcript_id "Ledus.S3G105900.t1"; gene_id "Ledus.S3G105900"
Ledus.S3	AUGUSTUS	CDS	7981480	7981798	1	-	2	transcript_id "Ledus.S3G105900.t1"; gene_id "Ledus.S3G105900"
Ledus.S3	AUGUSTUS	exon	7981480	7981798	.	-	.	transcript_id "Ledus.S3G105900.t1"; gene_id "Ledus.S3G105900"
Ledus.S3	AUGUSTUS	intron	7981799	7982286	.	-	.	transcript_id "Ledus.S3G105900.t1"; gene_id "Ledus.S3G105900"
Ledus.S3	AUGUSTUS	CDS	7982287	7982455	0.47	-	0	transcript_id "Ledus.S3G105900.t1"; gene_id "Ledus.S3G105900"
Ledus.S3	AUGUSTUS	exon	7982287	7982455	.	-	.	transcript_id "Ledus.S3G105900.t1"; gene_id "Ledus.S3G105900"
Ledus.S3	AUGUSTUS	start_codon	7982453	7982455	.	-	0	transcript_id "Ledus.S3G105900.t1"; gene_id "Ledus.S3G105900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8524.t1 is derived from g9554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16242	17078	.	+	.	Ledus.S3G000100
Ledus.S3	AUGUSTUS	transcript	16242	17078	.	+	.	transcript_id "Ledus.S3G000100.t1"; gene_id "Ledus.S3G000100"
Ledus.S3	AUGUSTUS	start_codon	16242	16244	.	+	0	transcript_id "Ledus.S3G000100.t1"; gene_id "Ledus.S3G000100"
Ledus.S3	AUGUSTUS	CDS	16242	17078	1	+	0	transcript_id "Ledus.S3G000100.t1"; gene_id "Ledus.S3G000100"
Ledus.S3	AUGUSTUS	exon	16242	17078	.	+	.	transcript_id "Ledus.S3G000100.t1"; gene_id "Ledus.S3G000100"
Ledus.S3	AUGUSTUS	stop_codon	17079	17081	.	+	0	transcript_id "Ledus.S3G000100.t1"; gene_id "Ledus.S3G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12207.t1 is derived from g5826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10389514	10391851	.	-	.	Ledus.S4G136300
Ledus.S4	AUGUSTUS	transcript	10389514	10391851	.	-	.	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	stop_codon	10389511	10389513	.	-	0	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	CDS	10389514	10389609	1	-	0	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	exon	10389514	10389609	.	-	.	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	intron	10389610	10389742	.	-	.	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	CDS	10389743	10390993	1	-	0	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	exon	10389743	10390993	.	-	.	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	intron	10390994	10391166	.	-	.	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	CDS	10391167	10391470	1	-	1	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	exon	10391167	10391470	.	-	.	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	intron	10391471	10391756	.	-	.	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	CDS	10391757	10391851	0.99	-	0	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	exon	10391757	10391851	.	-	.	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
Ledus.S4	AUGUSTUS	start_codon	10391849	10391851	.	-	0	transcript_id "Ledus.S4G136300.t1"; gene_id "Ledus.S4G136300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12538.t1 is derived from g6160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12796201	12799007	.	-	.	Ledus.S4G169400
Ledus.S4	AUGUSTUS	transcript	12796201	12799007	.	-	.	transcript_id "Ledus.S4G169400.t1"; gene_id "Ledus.S4G169400"
Ledus.S4	AUGUSTUS	stop_codon	12796198	12796200	.	-	0	transcript_id "Ledus.S4G169400.t1"; gene_id "Ledus.S4G169400"
Ledus.S4	AUGUSTUS	CDS	12796201	12797297	1	-	2	transcript_id "Ledus.S4G169400.t1"; gene_id "Ledus.S4G169400"
Ledus.S4	AUGUSTUS	exon	12796201	12797297	.	-	.	transcript_id "Ledus.S4G169400.t1"; gene_id "Ledus.S4G169400"
Ledus.S4	AUGUSTUS	intron	12797298	12797428	.	-	.	transcript_id "Ledus.S4G169400.t1"; gene_id "Ledus.S4G169400"
Ledus.S4	AUGUSTUS	CDS	12797429	12799007	0.99	-	0	transcript_id "Ledus.S4G169400.t1"; gene_id "Ledus.S4G169400"
Ledus.S4	AUGUSTUS	exon	12797429	12799007	.	-	.	transcript_id "Ledus.S4G169400.t1"; gene_id "Ledus.S4G169400"
Ledus.S4	AUGUSTUS	start_codon	12799005	12799007	.	-	0	transcript_id "Ledus.S4G169400.t1"; gene_id "Ledus.S4G169400"
# This transcript jg3047.t2 is derived from g482.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3048.t1 is derived from g483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5510786	5512653	.	+	.	Ledus.S1G046900
Ledus.S1	AUGUSTUS	transcript	5510786	5512653	.	+	.	transcript_id "Ledus.S1G046900.t1"; gene_id "Ledus.S1G046900"
Ledus.S1	AUGUSTUS	start_codon	5510786	5510788	.	+	0	transcript_id "Ledus.S1G046900.t1"; gene_id "Ledus.S1G046900"
Ledus.S1	AUGUSTUS	CDS	5510786	5511263	1	+	0	transcript_id "Ledus.S1G046900.t1"; gene_id "Ledus.S1G046900"
Ledus.S1	AUGUSTUS	exon	5510786	5511263	.	+	.	transcript_id "Ledus.S1G046900.t1"; gene_id "Ledus.S1G046900"
Ledus.S1	AUGUSTUS	intron	5511264	5511409	.	+	.	transcript_id "Ledus.S1G046900.t1"; gene_id "Ledus.S1G046900"
Ledus.S1	AUGUSTUS	CDS	5511410	5512653	1	+	2	transcript_id "Ledus.S1G046900.t1"; gene_id "Ledus.S1G046900"
Ledus.S1	AUGUSTUS	exon	5511410	5512653	.	+	.	transcript_id "Ledus.S1G046900.t1"; gene_id "Ledus.S1G046900"
Ledus.S1	AUGUSTUS	stop_codon	5512654	5512656	.	+	0	transcript_id "Ledus.S1G046900.t1"; gene_id "Ledus.S1G046900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4593.t1 is derived from g2030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17966674	17967096	.	+	.	Ledus.S1G201400
Ledus.S1	AUGUSTUS	transcript	17966674	17967096	.	+	.	transcript_id "Ledus.S1G201400.t1"; gene_id "Ledus.S1G201400"
Ledus.S1	AUGUSTUS	start_codon	17966674	17966676	.	+	0	transcript_id "Ledus.S1G201400.t1"; gene_id "Ledus.S1G201400"
Ledus.S1	AUGUSTUS	CDS	17966674	17967096	0.3	+	0	transcript_id "Ledus.S1G201400.t1"; gene_id "Ledus.S1G201400"
Ledus.S1	AUGUSTUS	exon	17966674	17967096	.	+	.	transcript_id "Ledus.S1G201400.t1"; gene_id "Ledus.S1G201400"
Ledus.S1	AUGUSTUS	stop_codon	17967097	17967099	.	+	0	transcript_id "Ledus.S1G201400.t1"; gene_id "Ledus.S1G201400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3837.t1 is derived from g1273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12967746	12969728	.	+	.	Ledus.S1G125800
Ledus.S1	AUGUSTUS	transcript	12967746	12969728	.	+	.	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	start_codon	12967746	12967748	.	+	0	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	CDS	12967746	12968699	0.94	+	0	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	exon	12967746	12968699	.	+	.	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	intron	12968700	12968800	.	+	.	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	CDS	12968801	12968900	0.46	+	0	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	exon	12968801	12968900	.	+	.	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	intron	12968901	12969123	.	+	.	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	CDS	12969124	12969273	0.85	+	2	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	exon	12969124	12969273	.	+	.	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	intron	12969274	12969389	.	+	.	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	CDS	12969390	12969574	0.99	+	2	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	exon	12969390	12969574	.	+	.	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	intron	12969575	12969656	.	+	.	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	CDS	12969657	12969728	0.91	+	0	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	exon	12969657	12969728	.	+	.	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
Ledus.S1	AUGUSTUS	stop_codon	12969729	12969731	.	+	0	transcript_id "Ledus.S1G125800.t1"; gene_id "Ledus.S1G125800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11796.t1 is derived from g5415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6829610	6831046	.	-	.	Ledus.S4G095200
Ledus.S4	AUGUSTUS	transcript	6829610	6831046	.	-	.	transcript_id "Ledus.S4G095200.t1"; gene_id "Ledus.S4G095200"
Ledus.S4	AUGUSTUS	stop_codon	6829607	6829609	.	-	0	transcript_id "Ledus.S4G095200.t1"; gene_id "Ledus.S4G095200"
Ledus.S4	AUGUSTUS	CDS	6829610	6830431	0.99	-	0	transcript_id "Ledus.S4G095200.t1"; gene_id "Ledus.S4G095200"
Ledus.S4	AUGUSTUS	exon	6829610	6830431	.	-	.	transcript_id "Ledus.S4G095200.t1"; gene_id "Ledus.S4G095200"
Ledus.S4	AUGUSTUS	intron	6830432	6830604	.	-	.	transcript_id "Ledus.S4G095200.t1"; gene_id "Ledus.S4G095200"
Ledus.S4	AUGUSTUS	CDS	6830605	6830764	0.97	-	1	transcript_id "Ledus.S4G095200.t1"; gene_id "Ledus.S4G095200"
Ledus.S4	AUGUSTUS	exon	6830605	6830764	.	-	.	transcript_id "Ledus.S4G095200.t1"; gene_id "Ledus.S4G095200"
Ledus.S4	AUGUSTUS	intron	6830765	6830939	.	-	.	transcript_id "Ledus.S4G095200.t1"; gene_id "Ledus.S4G095200"
Ledus.S4	AUGUSTUS	CDS	6830940	6831046	0.6	-	0	transcript_id "Ledus.S4G095200.t1"; gene_id "Ledus.S4G095200"
Ledus.S4	AUGUSTUS	exon	6830940	6831046	.	-	.	transcript_id "Ledus.S4G095200.t1"; gene_id "Ledus.S4G095200"
Ledus.S4	AUGUSTUS	start_codon	6831044	6831046	.	-	0	transcript_id "Ledus.S4G095200.t1"; gene_id "Ledus.S4G095200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12553.t1 is derived from g6175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12856285	12856736	.	-	.	Ledus.S4G170900
Ledus.S4	AUGUSTUS	transcript	12856285	12856736	.	-	.	transcript_id "Ledus.S4G170900.t1"; gene_id "Ledus.S4G170900"
Ledus.S4	AUGUSTUS	stop_codon	12856282	12856284	.	-	0	transcript_id "Ledus.S4G170900.t1"; gene_id "Ledus.S4G170900"
Ledus.S4	AUGUSTUS	CDS	12856285	12856349	0.58	-	2	transcript_id "Ledus.S4G170900.t1"; gene_id "Ledus.S4G170900"
Ledus.S4	AUGUSTUS	exon	12856285	12856349	.	-	.	transcript_id "Ledus.S4G170900.t1"; gene_id "Ledus.S4G170900"
Ledus.S4	AUGUSTUS	intron	12856350	12856512	.	-	.	transcript_id "Ledus.S4G170900.t1"; gene_id "Ledus.S4G170900"
Ledus.S4	AUGUSTUS	CDS	12856513	12856563	1	-	2	transcript_id "Ledus.S4G170900.t1"; gene_id "Ledus.S4G170900"
Ledus.S4	AUGUSTUS	exon	12856513	12856563	.	-	.	transcript_id "Ledus.S4G170900.t1"; gene_id "Ledus.S4G170900"
Ledus.S4	AUGUSTUS	intron	12856564	12856651	.	-	.	transcript_id "Ledus.S4G170900.t1"; gene_id "Ledus.S4G170900"
Ledus.S4	AUGUSTUS	CDS	12856652	12856736	0.98	-	0	transcript_id "Ledus.S4G170900.t1"; gene_id "Ledus.S4G170900"
Ledus.S4	AUGUSTUS	exon	12856652	12856736	.	-	.	transcript_id "Ledus.S4G170900.t1"; gene_id "Ledus.S4G170900"
Ledus.S4	AUGUSTUS	start_codon	12856734	12856736	.	-	0	transcript_id "Ledus.S4G170900.t1"; gene_id "Ledus.S4G170900"
# This transcript jg9733.t2 is derived from g10763.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9734.t1 is derived from g10764.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9479957	9480679	.	-	.	Ledus.S3G121100
Ledus.S3	AUGUSTUS	transcript	9479957	9480679	.	-	.	transcript_id "Ledus.S3G121100.t1"; gene_id "Ledus.S3G121100"
Ledus.S3	AUGUSTUS	stop_codon	9479954	9479956	.	-	0	transcript_id "Ledus.S3G121100.t1"; gene_id "Ledus.S3G121100"
Ledus.S3	AUGUSTUS	CDS	9479957	9480679	1	-	0	transcript_id "Ledus.S3G121100.t1"; gene_id "Ledus.S3G121100"
Ledus.S3	AUGUSTUS	exon	9479957	9480679	.	-	.	transcript_id "Ledus.S3G121100.t1"; gene_id "Ledus.S3G121100"
Ledus.S3	AUGUSTUS	start_codon	9480677	9480679	.	-	0	transcript_id "Ledus.S3G121100.t1"; gene_id "Ledus.S3G121100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8863.t1 is derived from g9893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2553718	2554068	.	-	.	Ledus.S3G034000
Ledus.S3	AUGUSTUS	transcript	2553718	2554068	.	-	.	transcript_id "Ledus.S3G034000.t1"; gene_id "Ledus.S3G034000"
Ledus.S3	AUGUSTUS	stop_codon	2553715	2553717	.	-	0	transcript_id "Ledus.S3G034000.t1"; gene_id "Ledus.S3G034000"
Ledus.S3	AUGUSTUS	CDS	2553718	2554068	0.61	-	0	transcript_id "Ledus.S3G034000.t1"; gene_id "Ledus.S3G034000"
Ledus.S3	AUGUSTUS	exon	2553718	2554068	.	-	.	transcript_id "Ledus.S3G034000.t1"; gene_id "Ledus.S3G034000"
Ledus.S3	AUGUSTUS	start_codon	2554066	2554068	.	-	0	transcript_id "Ledus.S3G034000.t1"; gene_id "Ledus.S3G034000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9589.t1 is derived from g10619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8110457	8111083	.	-	.	Ledus.S3G106600
Ledus.S3	AUGUSTUS	transcript	8110457	8111083	.	-	.	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	stop_codon	8110454	8110456	.	-	0	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	CDS	8110457	8110518	1	-	2	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	exon	8110457	8110518	.	-	.	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	intron	8110519	8110662	.	-	.	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	CDS	8110663	8110705	1	-	0	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	exon	8110663	8110705	.	-	.	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	intron	8110706	8110801	.	-	.	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	CDS	8110802	8110993	1	-	0	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	exon	8110802	8110993	.	-	.	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	intron	8110994	8111080	.	-	.	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	CDS	8111081	8111083	1	-	0	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	exon	8111081	8111083	.	-	.	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
Ledus.S3	AUGUSTUS	start_codon	8111081	8111083	.	-	0	transcript_id "Ledus.S3G106600.t1"; gene_id "Ledus.S3G106600"
# This transcript jg10313.t2 is derived from g11343.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10314.t1 is derived from g11344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14193433	14195131	.	-	.	Ledus.S3G179100
Ledus.S3	AUGUSTUS	transcript	14193433	14195131	.	-	.	transcript_id "Ledus.S3G179100.t1"; gene_id "Ledus.S3G179100"
Ledus.S3	AUGUSTUS	stop_codon	14193430	14193432	.	-	0	transcript_id "Ledus.S3G179100.t1"; gene_id "Ledus.S3G179100"
Ledus.S3	AUGUSTUS	CDS	14193433	14193893	0.37	-	2	transcript_id "Ledus.S3G179100.t1"; gene_id "Ledus.S3G179100"
Ledus.S3	AUGUSTUS	exon	14193433	14193893	.	-	.	transcript_id "Ledus.S3G179100.t1"; gene_id "Ledus.S3G179100"
Ledus.S3	AUGUSTUS	intron	14193894	14193995	.	-	.	transcript_id "Ledus.S3G179100.t1"; gene_id "Ledus.S3G179100"
Ledus.S3	AUGUSTUS	CDS	14193996	14194161	1	-	0	transcript_id "Ledus.S3G179100.t1"; gene_id "Ledus.S3G179100"
Ledus.S3	AUGUSTUS	exon	14193996	14194161	.	-	.	transcript_id "Ledus.S3G179100.t1"; gene_id "Ledus.S3G179100"
Ledus.S3	AUGUSTUS	intron	14194162	14194261	.	-	.	transcript_id "Ledus.S3G179100.t1"; gene_id "Ledus.S3G179100"
Ledus.S3	AUGUSTUS	CDS	14194262	14195131	1	-	0	transcript_id "Ledus.S3G179100.t1"; gene_id "Ledus.S3G179100"
Ledus.S3	AUGUSTUS	exon	14194262	14195131	.	-	.	transcript_id "Ledus.S3G179100.t1"; gene_id "Ledus.S3G179100"
Ledus.S3	AUGUSTUS	start_codon	14195129	14195131	.	-	0	transcript_id "Ledus.S3G179100.t1"; gene_id "Ledus.S3G179100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11578.t1 is derived from g5196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5366085	5368640	.	+	.	Ledus.S4G073400
Ledus.S4	AUGUSTUS	transcript	5366085	5368640	.	+	.	transcript_id "Ledus.S4G073400.t1"; gene_id "Ledus.S4G073400"
Ledus.S4	AUGUSTUS	start_codon	5366085	5366087	.	+	0	transcript_id "Ledus.S4G073400.t1"; gene_id "Ledus.S4G073400"
Ledus.S4	AUGUSTUS	CDS	5366085	5368640	0.54	+	0	transcript_id "Ledus.S4G073400.t1"; gene_id "Ledus.S4G073400"
Ledus.S4	AUGUSTUS	exon	5366085	5368640	.	+	.	transcript_id "Ledus.S4G073400.t1"; gene_id "Ledus.S4G073400"
Ledus.S4	AUGUSTUS	stop_codon	5368641	5368643	.	+	0	transcript_id "Ledus.S4G073400.t1"; gene_id "Ledus.S4G073400"
# This transcript jg386.t2 is derived from g7247.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg387.t1 is derived from g7248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2162006	2166590	.	+	.	Ledus.S2G026900
Ledus.S2	AUGUSTUS	transcript	2162006	2166590	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	start_codon	2162006	2162008	.	+	0	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2162006	2162057	1	+	0	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2162006	2162057	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2162058	2162130	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2162131	2162426	1	+	2	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2162131	2162426	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2162427	2162509	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2162510	2162790	1	+	0	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2162510	2162790	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2162791	2162882	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2162883	2163137	1	+	1	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2162883	2163137	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2163138	2163224	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2163225	2163457	1	+	1	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2163225	2163457	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2163458	2163541	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2163542	2163677	1	+	2	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2163542	2163677	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2163678	2163774	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2163775	2163849	1	+	1	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2163775	2163849	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2163850	2163938	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2163939	2164010	1	+	1	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2163939	2164010	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2164011	2164105	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2164106	2164168	1	+	1	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2164106	2164168	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2164169	2164618	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2164619	2164687	0.97	+	1	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2164619	2164687	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2164688	2164796	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2164797	2165029	1	+	1	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2164797	2165029	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2165030	2165117	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2165118	2165347	1	+	2	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2165118	2165347	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2165348	2165435	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2165436	2165562	1	+	0	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2165436	2165562	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2165563	2165654	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2165655	2165720	1	+	2	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2165655	2165720	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2165721	2165823	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2165824	2166007	1	+	2	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2165824	2166007	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2166008	2166083	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2166084	2166225	1	+	1	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2166084	2166225	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	intron	2166226	2166338	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	CDS	2166339	2166590	1	+	0	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	exon	2166339	2166590	.	+	.	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
Ledus.S2	AUGUSTUS	stop_codon	2166591	2166593	.	+	0	transcript_id "Ledus.S2G026900.t1"; gene_id "Ledus.S2G026900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11133.t1 is derived from g4751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2099597	2101952	.	+	.	Ledus.S4G028900
Ledus.S4	AUGUSTUS	transcript	2099597	2101952	.	+	.	transcript_id "Ledus.S4G028900.t1"; gene_id "Ledus.S4G028900"
Ledus.S4	AUGUSTUS	start_codon	2099597	2099599	.	+	0	transcript_id "Ledus.S4G028900.t1"; gene_id "Ledus.S4G028900"
Ledus.S4	AUGUSTUS	CDS	2099597	2099960	0.01	+	0	transcript_id "Ledus.S4G028900.t1"; gene_id "Ledus.S4G028900"
Ledus.S4	AUGUSTUS	exon	2099597	2099960	.	+	.	transcript_id "Ledus.S4G028900.t1"; gene_id "Ledus.S4G028900"
Ledus.S4	AUGUSTUS	intron	2099961	2101914	.	+	.	transcript_id "Ledus.S4G028900.t1"; gene_id "Ledus.S4G028900"
Ledus.S4	AUGUSTUS	CDS	2101915	2101952	0.5	+	2	transcript_id "Ledus.S4G028900.t1"; gene_id "Ledus.S4G028900"
Ledus.S4	AUGUSTUS	exon	2101915	2101952	.	+	.	transcript_id "Ledus.S4G028900.t1"; gene_id "Ledus.S4G028900"
Ledus.S4	AUGUSTUS	stop_codon	2101953	2101955	.	+	0	transcript_id "Ledus.S4G028900.t1"; gene_id "Ledus.S4G028900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11332.t1 is derived from g4950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3655335	3655787	.	+	.	Ledus.S4G048800
Ledus.S4	AUGUSTUS	transcript	3655335	3655787	.	+	.	transcript_id "Ledus.S4G048800.t1"; gene_id "Ledus.S4G048800"
Ledus.S4	AUGUSTUS	start_codon	3655335	3655337	.	+	0	transcript_id "Ledus.S4G048800.t1"; gene_id "Ledus.S4G048800"
Ledus.S4	AUGUSTUS	CDS	3655335	3655787	0.84	+	0	transcript_id "Ledus.S4G048800.t1"; gene_id "Ledus.S4G048800"
Ledus.S4	AUGUSTUS	exon	3655335	3655787	.	+	.	transcript_id "Ledus.S4G048800.t1"; gene_id "Ledus.S4G048800"
Ledus.S4	AUGUSTUS	stop_codon	3655788	3655790	.	+	0	transcript_id "Ledus.S4G048800.t1"; gene_id "Ledus.S4G048800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5786.t1 is derived from g3228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26792252	26793683	.	-	.	Ledus.S1G320700
Ledus.S1	AUGUSTUS	transcript	26792252	26793683	.	-	.	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	stop_codon	26792249	26792251	.	-	0	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	CDS	26792252	26792474	1	-	1	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	exon	26792252	26792474	.	-	.	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	intron	26792475	26792578	.	-	.	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	CDS	26792579	26792673	1	-	0	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	exon	26792579	26792673	.	-	.	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	intron	26792674	26792800	.	-	.	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	CDS	26792801	26792881	1	-	0	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	exon	26792801	26792881	.	-	.	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	intron	26792882	26793003	.	-	.	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	CDS	26793004	26793288	1	-	0	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	exon	26793004	26793288	.	-	.	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	intron	26793289	26793368	.	-	.	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	CDS	26793369	26793683	0.95	-	0	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	exon	26793369	26793683	.	-	.	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
Ledus.S1	AUGUSTUS	start_codon	26793681	26793683	.	-	0	transcript_id "Ledus.S1G320700.t1"; gene_id "Ledus.S1G320700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7027.t1 is derived from g6558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	890747	890980	.	+	.	Ledus.C7G008800
Ledus.C7	AUGUSTUS	transcript	890747	890980	.	+	.	transcript_id "Ledus.C7G008800.t1"; gene_id "Ledus.C7G008800"
Ledus.C7	AUGUSTUS	start_codon	890747	890749	.	+	0	transcript_id "Ledus.C7G008800.t1"; gene_id "Ledus.C7G008800"
Ledus.C7	AUGUSTUS	CDS	890747	890980	0.6	+	0	transcript_id "Ledus.C7G008800.t1"; gene_id "Ledus.C7G008800"
Ledus.C7	AUGUSTUS	exon	890747	890980	.	+	.	transcript_id "Ledus.C7G008800.t1"; gene_id "Ledus.C7G008800"
Ledus.C7	AUGUSTUS	stop_codon	890981	890983	.	+	0	transcript_id "Ledus.C7G008800.t1"; gene_id "Ledus.C7G008800"
# This transcript jg6735.t2 is derived from g4178.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6736.t1 is derived from g4179.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33628662	33630247	.	+	.	Ledus.S1G415700
Ledus.S1	AUGUSTUS	transcript	33628662	33630247	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	start_codon	33628662	33628664	.	+	0	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33628662	33629084	0.99	+	0	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33628662	33629084	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629085	33629178	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33629179	33629200	0.65	+	0	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33629179	33629200	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629201	33629273	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33629274	33629285	0.94	+	2	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33629274	33629285	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629286	33629378	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33629379	33629474	1	+	2	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33629379	33629474	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629475	33629581	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33629582	33629626	1	+	2	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33629582	33629626	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629627	33629755	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33629756	33629805	1	+	2	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33629756	33629805	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629806	33629881	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33629882	33629953	1	+	0	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33629882	33629953	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629954	33630041	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33630042	33630118	1	+	0	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33630042	33630118	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33630119	33630204	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33630205	33630247	1	+	1	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33630205	33630247	.	+	.	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	stop_codon	33630248	33630250	.	+	0	transcript_id "Ledus.S1G415700.t1"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	transcript	33628662	33630247	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	start_codon	33628662	33628664	.	+	0	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33628662	33629084	0.74	+	0	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33628662	33629084	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629085	33629206	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33629207	33629285	0.73	+	0	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33629207	33629285	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629286	33629378	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33629379	33629474	1	+	2	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33629379	33629474	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629475	33629581	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33629582	33629626	1	+	2	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33629582	33629626	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629627	33629755	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33629756	33629805	1	+	2	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33629756	33629805	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629806	33629881	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33629882	33629953	1	+	0	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33629882	33629953	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33629954	33630041	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33630042	33630118	1	+	0	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33630042	33630118	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	intron	33630119	33630204	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	CDS	33630205	33630247	1	+	1	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	exon	33630205	33630247	.	+	.	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
Ledus.S1	AUGUSTUS	stop_codon	33630248	33630250	.	+	0	transcript_id "Ledus.S1G415700.t2"; gene_id "Ledus.S1G415700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8643.t1 is derived from g9673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1058072	1059181	.	+	.	Ledus.S3G012000
Ledus.S3	AUGUSTUS	transcript	1058072	1059181	.	+	.	transcript_id "Ledus.S3G012000.t1"; gene_id "Ledus.S3G012000"
Ledus.S3	AUGUSTUS	start_codon	1058072	1058074	.	+	0	transcript_id "Ledus.S3G012000.t1"; gene_id "Ledus.S3G012000"
Ledus.S3	AUGUSTUS	CDS	1058072	1059181	0.99	+	0	transcript_id "Ledus.S3G012000.t1"; gene_id "Ledus.S3G012000"
Ledus.S3	AUGUSTUS	exon	1058072	1059181	.	+	.	transcript_id "Ledus.S3G012000.t1"; gene_id "Ledus.S3G012000"
Ledus.S3	AUGUSTUS	stop_codon	1059182	1059184	.	+	0	transcript_id "Ledus.S3G012000.t1"; gene_id "Ledus.S3G012000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9887.t1 is derived from g10917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10963547	10963756	.	+	.	Ledus.S3G136400
Ledus.S3	AUGUSTUS	transcript	10963547	10963756	.	+	.	transcript_id "Ledus.S3G136400.t1"; gene_id "Ledus.S3G136400"
Ledus.S3	AUGUSTUS	start_codon	10963547	10963549	.	+	0	transcript_id "Ledus.S3G136400.t1"; gene_id "Ledus.S3G136400"
Ledus.S3	AUGUSTUS	CDS	10963547	10963756	0.65	+	0	transcript_id "Ledus.S3G136400.t1"; gene_id "Ledus.S3G136400"
Ledus.S3	AUGUSTUS	exon	10963547	10963756	.	+	.	transcript_id "Ledus.S3G136400.t1"; gene_id "Ledus.S3G136400"
Ledus.S3	AUGUSTUS	stop_codon	10963757	10963759	.	+	0	transcript_id "Ledus.S3G136400.t1"; gene_id "Ledus.S3G136400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5186.t1 is derived from g2625.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22264064	22265791	.	-	.	Ledus.S1G260700
Ledus.S1	AUGUSTUS	transcript	22264156	22265791	.	-	.	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	stop_codon	22264153	22264155	.	-	0	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	CDS	22264156	22264197	1	-	0	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	exon	22264156	22264197	.	-	.	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	intron	22264198	22264337	.	-	.	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	CDS	22264338	22264406	1	-	0	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	exon	22264338	22264406	.	-	.	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	intron	22264407	22264512	.	-	.	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	CDS	22264513	22264849	0.97	-	1	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	exon	22264513	22264849	.	-	.	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	intron	22264850	22265160	.	-	.	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	CDS	22265161	22265354	1	-	0	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	exon	22265161	22265354	.	-	.	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	intron	22265355	22265695	.	-	.	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	CDS	22265696	22265791	0.96	-	0	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	exon	22265696	22265791	.	-	.	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	start_codon	22265789	22265791	.	-	0	transcript_id "Ledus.S1G260700.t1"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	transcript	22264064	22265791	.	-	.	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	stop_codon	22264061	22264063	.	-	0	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	CDS	22264064	22264069	0.98	-	0	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	exon	22264064	22264069	.	-	.	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	intron	22264070	22264337	.	-	.	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	CDS	22264338	22264406	0.99	-	0	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	exon	22264338	22264406	.	-	.	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	intron	22264407	22264512	.	-	.	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	CDS	22264513	22264849	0.92	-	1	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	exon	22264513	22264849	.	-	.	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	intron	22264850	22265160	.	-	.	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	CDS	22265161	22265354	1	-	0	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	exon	22265161	22265354	.	-	.	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	intron	22265355	22265695	.	-	.	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	CDS	22265696	22265791	0.92	-	0	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	exon	22265696	22265791	.	-	.	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
Ledus.S1	AUGUSTUS	start_codon	22265789	22265791	.	-	0	transcript_id "Ledus.S1G260700.t2"; gene_id "Ledus.S1G260700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5025.t1 is derived from g2464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21197703	21200636	.	+	.	Ledus.S1G244600
Ledus.S1	AUGUSTUS	transcript	21197703	21200636	.	+	.	transcript_id "Ledus.S1G244600.t1"; gene_id "Ledus.S1G244600"
Ledus.S1	AUGUSTUS	start_codon	21197703	21197705	.	+	0	transcript_id "Ledus.S1G244600.t1"; gene_id "Ledus.S1G244600"
Ledus.S1	AUGUSTUS	CDS	21197703	21197942	0.58	+	0	transcript_id "Ledus.S1G244600.t1"; gene_id "Ledus.S1G244600"
Ledus.S1	AUGUSTUS	exon	21197703	21197942	.	+	.	transcript_id "Ledus.S1G244600.t1"; gene_id "Ledus.S1G244600"
Ledus.S1	AUGUSTUS	intron	21197943	21198030	.	+	.	transcript_id "Ledus.S1G244600.t1"; gene_id "Ledus.S1G244600"
Ledus.S1	AUGUSTUS	CDS	21198031	21198131	1	+	0	transcript_id "Ledus.S1G244600.t1"; gene_id "Ledus.S1G244600"
Ledus.S1	AUGUSTUS	exon	21198031	21198131	.	+	.	transcript_id "Ledus.S1G244600.t1"; gene_id "Ledus.S1G244600"
Ledus.S1	AUGUSTUS	intron	21198132	21198217	.	+	.	transcript_id "Ledus.S1G244600.t1"; gene_id "Ledus.S1G244600"
Ledus.S1	AUGUSTUS	CDS	21198218	21200636	1	+	1	transcript_id "Ledus.S1G244600.t1"; gene_id "Ledus.S1G244600"
Ledus.S1	AUGUSTUS	exon	21198218	21200636	.	+	.	transcript_id "Ledus.S1G244600.t1"; gene_id "Ledus.S1G244600"
Ledus.S1	AUGUSTUS	stop_codon	21200637	21200639	.	+	0	transcript_id "Ledus.S1G244600.t1"; gene_id "Ledus.S1G244600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7136.t1 is derived from g6667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1719833	1721896	.	-	.	Ledus.C7G019700
Ledus.C7	AUGUSTUS	transcript	1721281	1721896	.	-	.	transcript_id "Ledus.C7G019700.t1"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	stop_codon	1721278	1721280	.	-	0	transcript_id "Ledus.C7G019700.t1"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	CDS	1721281	1721337	0.85	-	0	transcript_id "Ledus.C7G019700.t1"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	exon	1721281	1721337	.	-	.	transcript_id "Ledus.C7G019700.t1"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	intron	1721338	1721428	.	-	.	transcript_id "Ledus.C7G019700.t1"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	CDS	1721429	1721896	0.86	-	0	transcript_id "Ledus.C7G019700.t1"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	exon	1721429	1721896	.	-	.	transcript_id "Ledus.C7G019700.t1"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	start_codon	1721894	1721896	.	-	0	transcript_id "Ledus.C7G019700.t1"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	transcript	1719833	1720753	.	-	.	transcript_id "Ledus.C7G019700.t2"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	stop_codon	1719830	1719832	.	-	0	transcript_id "Ledus.C7G019700.t2"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	CDS	1719833	1720753	0.74	-	0	transcript_id "Ledus.C7G019700.t2"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	exon	1719833	1720753	.	-	.	transcript_id "Ledus.C7G019700.t2"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	start_codon	1720751	1720753	.	-	0	transcript_id "Ledus.C7G019700.t2"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	transcript	1719833	1721896	.	-	.	transcript_id "Ledus.C7G019700.t3"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	stop_codon	1719830	1719832	.	-	0	transcript_id "Ledus.C7G019700.t3"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	CDS	1719833	1721034	0.32	-	2	transcript_id "Ledus.C7G019700.t3"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	exon	1719833	1721034	.	-	.	transcript_id "Ledus.C7G019700.t3"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	intron	1721035	1721232	.	-	.	transcript_id "Ledus.C7G019700.t3"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	CDS	1721233	1721896	0.27	-	0	transcript_id "Ledus.C7G019700.t3"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	exon	1721233	1721896	.	-	.	transcript_id "Ledus.C7G019700.t3"; gene_id "Ledus.C7G019700"
Ledus.C7	AUGUSTUS	start_codon	1721894	1721896	.	-	0	transcript_id "Ledus.C7G019700.t3"; gene_id "Ledus.C7G019700"
# This transcript jg1031.t2 is derived from g7892.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1032.t1 is derived from g7893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6881282	6883612	.	+	.	Ledus.S2G091400
Ledus.S2	AUGUSTUS	transcript	6881282	6883612	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	start_codon	6881282	6881284	.	+	0	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	CDS	6881282	6881543	0.2	+	0	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	exon	6881282	6881543	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	intron	6881544	6881659	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	CDS	6881660	6881841	1	+	2	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	exon	6881660	6881841	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	intron	6881842	6881933	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	CDS	6881934	6882058	0.51	+	0	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	exon	6881934	6882058	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	intron	6882059	6882177	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	CDS	6882178	6882286	1	+	1	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	exon	6882178	6882286	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	intron	6882287	6882539	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	CDS	6882540	6882632	1	+	0	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	exon	6882540	6882632	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	intron	6882633	6882729	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	CDS	6882730	6882846	1	+	0	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	exon	6882730	6882846	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	intron	6882847	6882921	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	CDS	6882922	6883005	1	+	0	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	exon	6882922	6883005	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	intron	6883006	6883128	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	CDS	6883129	6883233	1	+	0	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	exon	6883129	6883233	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	intron	6883234	6883324	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	CDS	6883325	6883411	1	+	0	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	exon	6883325	6883411	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	intron	6883412	6883495	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	CDS	6883496	6883612	1	+	0	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	exon	6883496	6883612	.	+	.	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
Ledus.S2	AUGUSTUS	stop_codon	6883613	6883615	.	+	0	transcript_id "Ledus.S2G091400.t1"; gene_id "Ledus.S2G091400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4820.t1 is derived from g2258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19946193	19952181	.	+	.	Ledus.S1G224100
Ledus.S1	AUGUSTUS	transcript	19946193	19952181	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	start_codon	19946193	19946195	.	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19946193	19946256	0.87	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19946193	19946256	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19946257	19946365	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19946366	19946568	0.96	+	2	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19946366	19946568	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19946569	19946674	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19946675	19947019	0.66	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19946675	19947019	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19947020	19947135	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19947136	19947240	1	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19947136	19947240	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19947241	19947358	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19947359	19947486	1	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19947359	19947486	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19947487	19947574	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19947575	19947751	1	+	1	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19947575	19947751	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19947752	19947851	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19947852	19947945	1	+	1	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19947852	19947945	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19947946	19948069	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19948070	19948372	1	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19948070	19948372	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19948373	19948491	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19948492	19948689	0.98	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19948492	19948689	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19948690	19948807	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19948808	19948909	1	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19948808	19948909	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19948910	19949147	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19949148	19949399	1	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19949148	19949399	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19949400	19949586	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19949587	19949805	1	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19949587	19949805	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19949806	19949919	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19949920	19950090	1	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19949920	19950090	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19950091	19950208	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19950209	19950394	0.86	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19950209	19950394	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19950395	19950485	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19950486	19951425	0.74	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19950486	19951425	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19951426	19951704	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19951705	19951745	0.53	+	2	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19951705	19951745	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19951746	19951842	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19951843	19952031	0.72	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19951843	19952031	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	intron	19952032	19952151	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	CDS	19952152	19952181	0.72	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	exon	19952152	19952181	.	+	.	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
Ledus.S1	AUGUSTUS	stop_codon	19952182	19952184	.	+	0	transcript_id "Ledus.S1G224100.t1"; gene_id "Ledus.S1G224100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4161.t1 is derived from g1597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15048753	15049358	.	+	.	Ledus.S1G158200
Ledus.S1	AUGUSTUS	transcript	15048753	15049358	.	+	.	transcript_id "Ledus.S1G158200.t1"; gene_id "Ledus.S1G158200"
Ledus.S1	AUGUSTUS	start_codon	15048753	15048755	.	+	0	transcript_id "Ledus.S1G158200.t1"; gene_id "Ledus.S1G158200"
Ledus.S1	AUGUSTUS	CDS	15048753	15049094	0.97	+	0	transcript_id "Ledus.S1G158200.t1"; gene_id "Ledus.S1G158200"
Ledus.S1	AUGUSTUS	exon	15048753	15049094	.	+	.	transcript_id "Ledus.S1G158200.t1"; gene_id "Ledus.S1G158200"
Ledus.S1	AUGUSTUS	intron	15049095	15049193	.	+	.	transcript_id "Ledus.S1G158200.t1"; gene_id "Ledus.S1G158200"
Ledus.S1	AUGUSTUS	CDS	15049194	15049358	0.99	+	0	transcript_id "Ledus.S1G158200.t1"; gene_id "Ledus.S1G158200"
Ledus.S1	AUGUSTUS	exon	15049194	15049358	.	+	.	transcript_id "Ledus.S1G158200.t1"; gene_id "Ledus.S1G158200"
Ledus.S1	AUGUSTUS	stop_codon	15049359	15049361	.	+	0	transcript_id "Ledus.S1G158200.t1"; gene_id "Ledus.S1G158200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg54.t1 is derived from g9467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	149168	150710	.	+	.	Ledus.C8G001400
Ledus.C8	AUGUSTUS	transcript	149168	150710	.	+	.	transcript_id "Ledus.C8G001400.t1"; gene_id "Ledus.C8G001400"
Ledus.C8	AUGUSTUS	start_codon	149168	149170	.	+	0	transcript_id "Ledus.C8G001400.t1"; gene_id "Ledus.C8G001400"
Ledus.C8	AUGUSTUS	CDS	149168	149173	1	+	0	transcript_id "Ledus.C8G001400.t1"; gene_id "Ledus.C8G001400"
Ledus.C8	AUGUSTUS	exon	149168	149173	.	+	.	transcript_id "Ledus.C8G001400.t1"; gene_id "Ledus.C8G001400"
Ledus.C8	AUGUSTUS	intron	149174	149424	.	+	.	transcript_id "Ledus.C8G001400.t1"; gene_id "Ledus.C8G001400"
Ledus.C8	AUGUSTUS	CDS	149425	149601	1	+	0	transcript_id "Ledus.C8G001400.t1"; gene_id "Ledus.C8G001400"
Ledus.C8	AUGUSTUS	exon	149425	149601	.	+	.	transcript_id "Ledus.C8G001400.t1"; gene_id "Ledus.C8G001400"
Ledus.C8	AUGUSTUS	intron	149602	150665	.	+	.	transcript_id "Ledus.C8G001400.t1"; gene_id "Ledus.C8G001400"
Ledus.C8	AUGUSTUS	CDS	150666	150710	1	+	0	transcript_id "Ledus.C8G001400.t1"; gene_id "Ledus.C8G001400"
Ledus.C8	AUGUSTUS	exon	150666	150710	.	+	.	transcript_id "Ledus.C8G001400.t1"; gene_id "Ledus.C8G001400"
Ledus.C8	AUGUSTUS	stop_codon	150711	150713	.	+	0	transcript_id "Ledus.C8G001400.t1"; gene_id "Ledus.C8G001400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11724.t1 is derived from g5343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6275515	6276003	.	+	.	Ledus.S4G088000
Ledus.S4	AUGUSTUS	transcript	6275515	6276003	.	+	.	transcript_id "Ledus.S4G088000.t1"; gene_id "Ledus.S4G088000"
Ledus.S4	AUGUSTUS	start_codon	6275515	6275517	.	+	0	transcript_id "Ledus.S4G088000.t1"; gene_id "Ledus.S4G088000"
Ledus.S4	AUGUSTUS	CDS	6275515	6276003	0.91	+	0	transcript_id "Ledus.S4G088000.t1"; gene_id "Ledus.S4G088000"
Ledus.S4	AUGUSTUS	exon	6275515	6276003	.	+	.	transcript_id "Ledus.S4G088000.t1"; gene_id "Ledus.S4G088000"
Ledus.S4	AUGUSTUS	stop_codon	6276004	6276006	.	+	0	transcript_id "Ledus.S4G088000.t1"; gene_id "Ledus.S4G088000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9815.t1 is derived from g10845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10089050	10090569	.	-	.	Ledus.S3G129200
Ledus.S3	AUGUSTUS	transcript	10089050	10090569	.	-	.	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	stop_codon	10089047	10089049	.	-	0	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	CDS	10089050	10089283	1	-	0	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	exon	10089050	10089283	.	-	.	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	intron	10089284	10089357	.	-	.	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	CDS	10089358	10089447	1	-	0	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	exon	10089358	10089447	.	-	.	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	intron	10089448	10089808	.	-	.	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	CDS	10089809	10089843	1	-	2	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	exon	10089809	10089843	.	-	.	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	intron	10089844	10089973	.	-	.	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	CDS	10089974	10090094	1	-	0	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	exon	10089974	10090094	.	-	.	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	intron	10090095	10090434	.	-	.	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	CDS	10090435	10090569	0.89	-	0	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	exon	10090435	10090569	.	-	.	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
Ledus.S3	AUGUSTUS	start_codon	10090567	10090569	.	-	0	transcript_id "Ledus.S3G129200.t1"; gene_id "Ledus.S3G129200"
# This transcript jg12711.t2 is derived from g6333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12712.t1 is derived from g6334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14028531	14029865	.	-	.	Ledus.S4G186800
Ledus.S4	AUGUSTUS	transcript	14028531	14029865	.	-	.	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	stop_codon	14028528	14028530	.	-	0	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	CDS	14028531	14028787	1	-	2	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	exon	14028531	14028787	.	-	.	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	intron	14028788	14028880	.	-	.	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	CDS	14028881	14028980	1	-	0	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	exon	14028881	14028980	.	-	.	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	intron	14028981	14029106	.	-	.	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	CDS	14029107	14029350	1	-	1	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	exon	14029107	14029350	.	-	.	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	intron	14029351	14029548	.	-	.	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	CDS	14029549	14029865	0.51	-	0	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	exon	14029549	14029865	.	-	.	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
Ledus.S4	AUGUSTUS	start_codon	14029863	14029865	.	-	0	transcript_id "Ledus.S4G186800.t1"; gene_id "Ledus.S4G186800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4396.t1 is derived from g1832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16790661	16792680	.	-	.	Ledus.S1G181700
Ledus.S1	AUGUSTUS	transcript	16790661	16792680	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	stop_codon	16790658	16790660	.	-	0	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	CDS	16790661	16790858	1	-	0	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	exon	16790661	16790858	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	intron	16790859	16790987	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	CDS	16790988	16791126	0.99	-	1	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	exon	16790988	16791126	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	intron	16791127	16791234	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	CDS	16791235	16791296	1	-	0	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	exon	16791235	16791296	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	intron	16791297	16791394	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	CDS	16791395	16791533	1	-	1	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	exon	16791395	16791533	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	intron	16791534	16791698	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	CDS	16791699	16791765	1	-	2	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	exon	16791699	16791765	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	intron	16791766	16791838	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	CDS	16791839	16791850	0.91	-	2	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	exon	16791839	16791850	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	intron	16791851	16792026	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	CDS	16792027	16792098	0.92	-	2	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	exon	16792027	16792098	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	intron	16792099	16792196	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	CDS	16792197	16792255	0.58	-	1	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	exon	16792197	16792255	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	intron	16792256	16792344	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	CDS	16792345	16792418	0.58	-	0	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	exon	16792345	16792418	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	intron	16792419	16792509	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	CDS	16792510	16792680	0.98	-	0	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	exon	16792510	16792680	.	-	.	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
Ledus.S1	AUGUSTUS	start_codon	16792678	16792680	.	-	0	transcript_id "Ledus.S1G181700.t1"; gene_id "Ledus.S1G181700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9543.t1 is derived from g10573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7661764	7667805	.	-	.	Ledus.S3G102000
Ledus.S3	AUGUSTUS	transcript	7661764	7667805	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	stop_codon	7661761	7661763	.	-	0	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7661764	7661800	0.95	-	1	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7661764	7661800	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7661801	7662057	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7662058	7662141	0.9	-	1	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7662058	7662141	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7662142	7662224	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7662225	7662276	0.89	-	2	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7662225	7662276	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7662277	7662628	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7662629	7662814	0.7	-	2	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7662629	7662814	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7662815	7663041	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7663042	7663086	0.52	-	2	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7663042	7663086	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7663087	7663178	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7663179	7663369	1	-	1	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7663179	7663369	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7663370	7663445	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7663446	7663560	1	-	2	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7663446	7663560	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7663561	7663663	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7663664	7663787	1	-	0	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7663664	7663787	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7663788	7663938	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7663939	7664010	1	-	0	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7663939	7664010	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7664011	7664129	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7664130	7664256	1	-	1	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7664130	7664256	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7664257	7664460	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7664461	7664591	1	-	0	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7664461	7664591	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7664592	7664685	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7664686	7664855	1	-	2	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7664686	7664855	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7664856	7664954	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7664955	7665068	1	-	2	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7664955	7665068	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7665069	7665391	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7665392	7665470	1	-	0	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7665392	7665470	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7665471	7665552	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7665553	7665699	1	-	0	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7665553	7665699	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7665700	7665846	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7665847	7666104	0.96	-	0	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7665847	7666104	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7666105	7666270	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7666271	7666466	1	-	1	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7666271	7666466	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7666467	7666604	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7666605	7666786	1	-	0	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7666605	7666786	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7666787	7666888	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7666889	7667002	0.87	-	0	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7666889	7667002	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7667003	7667111	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7667112	7667223	1	-	1	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7667112	7667223	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7667224	7667296	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7667297	7667805	0.87	-	0	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7667297	7667805	.	-	.	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	start_codon	7667803	7667805	.	-	0	transcript_id "Ledus.S3G102000.t1"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	transcript	7661764	7667805	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	stop_codon	7661761	7661763	.	-	0	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7661764	7661800	0.99	-	1	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7661764	7661800	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7661801	7662057	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7662058	7662141	0.96	-	1	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7662058	7662141	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7662142	7662224	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7662225	7662276	0.96	-	2	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7662225	7662276	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7662277	7662628	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7662629	7662814	0.81	-	2	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7662629	7662814	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7662815	7663041	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7663042	7663086	0.6	-	2	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7663042	7663086	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7663087	7663178	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7663179	7663369	1	-	1	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7663179	7663369	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7663370	7663445	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7663446	7663560	1	-	2	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7663446	7663560	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7663561	7663663	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7663664	7663787	1	-	0	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7663664	7663787	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7663788	7663938	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7663939	7664010	0.99	-	0	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7663939	7664010	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7664011	7664129	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7664130	7664256	1	-	1	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7664130	7664256	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7664257	7664460	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7664461	7664591	1	-	0	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7664461	7664591	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7664592	7664685	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7664686	7664855	1	-	2	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7664686	7664855	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7664856	7664954	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7664955	7665068	1	-	2	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7664955	7665068	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7665069	7665391	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7665392	7665470	1	-	0	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7665392	7665470	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7665471	7665552	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7665553	7665699	1	-	0	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7665553	7665699	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7665700	7665846	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7665847	7666104	0.96	-	0	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7665847	7666104	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7666105	7666270	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7666271	7666466	1	-	1	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7666271	7666466	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7666467	7666604	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7666605	7666786	1	-	0	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7666605	7666786	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7666787	7666888	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7666889	7667002	0.73	-	0	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7666889	7667002	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7667003	7667111	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7667112	7667223	1	-	1	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7667112	7667223	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	intron	7667224	7667302	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	CDS	7667303	7667805	0.68	-	0	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	exon	7667303	7667805	.	-	.	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
Ledus.S3	AUGUSTUS	start_codon	7667803	7667805	.	-	0	transcript_id "Ledus.S3G102000.t2"; gene_id "Ledus.S3G102000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13086.t1 is derived from g6896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5297010	5297360	.	+	.	Ledus.S6G014800
Ledus.S6	AUGUSTUS	transcript	5297010	5297360	.	+	.	transcript_id "Ledus.S6G014800.t1"; gene_id "Ledus.S6G014800"
Ledus.S6	AUGUSTUS	start_codon	5297010	5297012	.	+	0	transcript_id "Ledus.S6G014800.t1"; gene_id "Ledus.S6G014800"
Ledus.S6	AUGUSTUS	CDS	5297010	5297360	0.72	+	0	transcript_id "Ledus.S6G014800.t1"; gene_id "Ledus.S6G014800"
Ledus.S6	AUGUSTUS	exon	5297010	5297360	.	+	.	transcript_id "Ledus.S6G014800.t1"; gene_id "Ledus.S6G014800"
Ledus.S6	AUGUSTUS	stop_codon	5297361	5297363	.	+	0	transcript_id "Ledus.S6G014800.t1"; gene_id "Ledus.S6G014800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11047.t1 is derived from g4665.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1401331	1402522	.	+	.	Ledus.S4G020300
Ledus.S4	AUGUSTUS	transcript	1401331	1402522	.	+	.	transcript_id "Ledus.S4G020300.t1"; gene_id "Ledus.S4G020300"
Ledus.S4	AUGUSTUS	start_codon	1401331	1401333	.	+	0	transcript_id "Ledus.S4G020300.t1"; gene_id "Ledus.S4G020300"
Ledus.S4	AUGUSTUS	CDS	1401331	1401912	0.66	+	0	transcript_id "Ledus.S4G020300.t1"; gene_id "Ledus.S4G020300"
Ledus.S4	AUGUSTUS	exon	1401331	1401912	.	+	.	transcript_id "Ledus.S4G020300.t1"; gene_id "Ledus.S4G020300"
Ledus.S4	AUGUSTUS	intron	1401913	1402048	.	+	.	transcript_id "Ledus.S4G020300.t1"; gene_id "Ledus.S4G020300"
Ledus.S4	AUGUSTUS	CDS	1402049	1402158	1	+	0	transcript_id "Ledus.S4G020300.t1"; gene_id "Ledus.S4G020300"
Ledus.S4	AUGUSTUS	exon	1402049	1402158	.	+	.	transcript_id "Ledus.S4G020300.t1"; gene_id "Ledus.S4G020300"
Ledus.S4	AUGUSTUS	intron	1402159	1402293	.	+	.	transcript_id "Ledus.S4G020300.t1"; gene_id "Ledus.S4G020300"
Ledus.S4	AUGUSTUS	CDS	1402294	1402522	0.99	+	1	transcript_id "Ledus.S4G020300.t1"; gene_id "Ledus.S4G020300"
Ledus.S4	AUGUSTUS	exon	1402294	1402522	.	+	.	transcript_id "Ledus.S4G020300.t1"; gene_id "Ledus.S4G020300"
Ledus.S4	AUGUSTUS	stop_codon	1402523	1402525	.	+	0	transcript_id "Ledus.S4G020300.t1"; gene_id "Ledus.S4G020300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4773.t1 is derived from g2211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19683886	19685801	.	-	.	Ledus.S1G219400
Ledus.S1	AUGUSTUS	transcript	19683886	19685801	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	stop_codon	19683883	19683885	.	-	0	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	CDS	19683886	19683993	0.95	-	0	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	exon	19683886	19683993	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	intron	19683994	19684106	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	CDS	19684107	19684187	0.98	-	0	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	exon	19684107	19684187	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	intron	19684188	19684256	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	CDS	19684257	19684406	1	-	0	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	exon	19684257	19684406	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	intron	19684407	19684517	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	CDS	19684518	19684567	1	-	2	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	exon	19684518	19684567	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	intron	19684568	19684668	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	CDS	19684669	19684717	0.99	-	0	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	exon	19684669	19684717	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	intron	19684718	19684819	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	CDS	19684820	19684897	1	-	0	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	exon	19684820	19684897	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	intron	19684898	19684983	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	CDS	19684984	19685062	1	-	1	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	exon	19684984	19685062	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	intron	19685063	19685144	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	CDS	19685145	19685234	1	-	1	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	exon	19685145	19685234	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	intron	19685235	19685322	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	CDS	19685323	19685801	0.49	-	0	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	exon	19685323	19685801	.	-	.	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
Ledus.S1	AUGUSTUS	start_codon	19685799	19685801	.	-	0	transcript_id "Ledus.S1G219400.t1"; gene_id "Ledus.S1G219400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4120.t1 is derived from g1556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14787506	14788858	.	+	.	Ledus.S1G154100
Ledus.S1	AUGUSTUS	transcript	14787506	14788858	.	+	.	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	start_codon	14787506	14787508	.	+	0	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	CDS	14787506	14788373	0.58	+	0	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	exon	14787506	14788373	.	+	.	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	intron	14788374	14788489	.	+	.	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	CDS	14788490	14788507	1	+	2	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	exon	14788490	14788507	.	+	.	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	intron	14788508	14788592	.	+	.	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	CDS	14788593	14788671	1	+	2	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	exon	14788593	14788671	.	+	.	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	intron	14788672	14788824	.	+	.	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	CDS	14788825	14788858	1	+	1	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	exon	14788825	14788858	.	+	.	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
Ledus.S1	AUGUSTUS	stop_codon	14788859	14788861	.	+	0	transcript_id "Ledus.S1G154100.t1"; gene_id "Ledus.S1G154100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6454.t1 is derived from g3897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31333241	31335037	.	-	.	Ledus.S1G387500
Ledus.S1	AUGUSTUS	transcript	31333241	31335037	.	-	.	transcript_id "Ledus.S1G387500.t1"; gene_id "Ledus.S1G387500"
Ledus.S1	AUGUSTUS	stop_codon	31333238	31333240	.	-	0	transcript_id "Ledus.S1G387500.t1"; gene_id "Ledus.S1G387500"
Ledus.S1	AUGUSTUS	CDS	31333241	31335037	1	-	0	transcript_id "Ledus.S1G387500.t1"; gene_id "Ledus.S1G387500"
Ledus.S1	AUGUSTUS	exon	31333241	31335037	.	-	.	transcript_id "Ledus.S1G387500.t1"; gene_id "Ledus.S1G387500"
Ledus.S1	AUGUSTUS	start_codon	31335035	31335037	.	-	0	transcript_id "Ledus.S1G387500.t1"; gene_id "Ledus.S1G387500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg322.t1 is derived from g7183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1666928	1667927	.	+	.	Ledus.S2G020400
Ledus.S2	AUGUSTUS	transcript	1666928	1667927	.	+	.	transcript_id "Ledus.S2G020400.t1"; gene_id "Ledus.S2G020400"
Ledus.S2	AUGUSTUS	start_codon	1666928	1666930	.	+	0	transcript_id "Ledus.S2G020400.t1"; gene_id "Ledus.S2G020400"
Ledus.S2	AUGUSTUS	CDS	1666928	1667644	1	+	0	transcript_id "Ledus.S2G020400.t1"; gene_id "Ledus.S2G020400"
Ledus.S2	AUGUSTUS	exon	1666928	1667644	.	+	.	transcript_id "Ledus.S2G020400.t1"; gene_id "Ledus.S2G020400"
Ledus.S2	AUGUSTUS	intron	1667645	1667768	.	+	.	transcript_id "Ledus.S2G020400.t1"; gene_id "Ledus.S2G020400"
Ledus.S2	AUGUSTUS	CDS	1667769	1667927	0.92	+	0	transcript_id "Ledus.S2G020400.t1"; gene_id "Ledus.S2G020400"
Ledus.S2	AUGUSTUS	exon	1667769	1667927	.	+	.	transcript_id "Ledus.S2G020400.t1"; gene_id "Ledus.S2G020400"
Ledus.S2	AUGUSTUS	stop_codon	1667928	1667930	.	+	0	transcript_id "Ledus.S2G020400.t1"; gene_id "Ledus.S2G020400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11170.t1 is derived from g4788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2348722	2351925	.	-	.	Ledus.S4G032600
Ledus.S4	AUGUSTUS	transcript	2348722	2351925	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	stop_codon	2348719	2348721	.	-	0	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	CDS	2348722	2348919	0.71	-	0	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	exon	2348722	2348919	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	intron	2348920	2349013	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	CDS	2349014	2349125	0.81	-	1	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	exon	2349014	2349125	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	intron	2349126	2349657	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	CDS	2349658	2349774	1	-	1	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	exon	2349658	2349774	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	intron	2349775	2349930	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	CDS	2349931	2350177	0.73	-	2	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	exon	2349931	2350177	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	intron	2350178	2350361	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	CDS	2350362	2350434	0.8	-	0	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	exon	2350362	2350434	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	intron	2350435	2350619	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	CDS	2350620	2350681	0.87	-	2	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	exon	2350620	2350681	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	intron	2350682	2350767	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	CDS	2350768	2350854	1	-	2	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	exon	2350768	2350854	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	intron	2350855	2350967	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	CDS	2350968	2351073	0.99	-	0	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	exon	2350968	2351073	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	intron	2351074	2351301	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	CDS	2351302	2351925	0.97	-	0	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	exon	2351302	2351925	.	-	.	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
Ledus.S4	AUGUSTUS	start_codon	2351923	2351925	.	-	0	transcript_id "Ledus.S4G032600.t1"; gene_id "Ledus.S4G032600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1535.t1 is derived from g8396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10842368	10842781	.	+	.	Ledus.S2G141700
Ledus.S2	AUGUSTUS	transcript	10842368	10842781	.	+	.	transcript_id "Ledus.S2G141700.t1"; gene_id "Ledus.S2G141700"
Ledus.S2	AUGUSTUS	start_codon	10842368	10842370	.	+	0	transcript_id "Ledus.S2G141700.t1"; gene_id "Ledus.S2G141700"
Ledus.S2	AUGUSTUS	CDS	10842368	10842781	0.99	+	0	transcript_id "Ledus.S2G141700.t1"; gene_id "Ledus.S2G141700"
Ledus.S2	AUGUSTUS	exon	10842368	10842781	.	+	.	transcript_id "Ledus.S2G141700.t1"; gene_id "Ledus.S2G141700"
Ledus.S2	AUGUSTUS	stop_codon	10842782	10842784	.	+	0	transcript_id "Ledus.S2G141700.t1"; gene_id "Ledus.S2G141700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6537.t1 is derived from g3980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32195438	32196179	.	+	.	Ledus.S1G395800
Ledus.S1	AUGUSTUS	transcript	32195438	32196179	.	+	.	transcript_id "Ledus.S1G395800.t1"; gene_id "Ledus.S1G395800"
Ledus.S1	AUGUSTUS	start_codon	32195438	32195440	.	+	0	transcript_id "Ledus.S1G395800.t1"; gene_id "Ledus.S1G395800"
Ledus.S1	AUGUSTUS	CDS	32195438	32195605	0.23	+	0	transcript_id "Ledus.S1G395800.t1"; gene_id "Ledus.S1G395800"
Ledus.S1	AUGUSTUS	exon	32195438	32195605	.	+	.	transcript_id "Ledus.S1G395800.t1"; gene_id "Ledus.S1G395800"
Ledus.S1	AUGUSTUS	intron	32195606	32195957	.	+	.	transcript_id "Ledus.S1G395800.t1"; gene_id "Ledus.S1G395800"
Ledus.S1	AUGUSTUS	CDS	32195958	32196179	0.22	+	0	transcript_id "Ledus.S1G395800.t1"; gene_id "Ledus.S1G395800"
Ledus.S1	AUGUSTUS	exon	32195958	32196179	.	+	.	transcript_id "Ledus.S1G395800.t1"; gene_id "Ledus.S1G395800"
Ledus.S1	AUGUSTUS	stop_codon	32196180	32196182	.	+	0	transcript_id "Ledus.S1G395800.t1"; gene_id "Ledus.S1G395800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7330.t1 is derived from g12001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1228902	1229225	.	+	.	Ledus.S5G010800
Ledus.S5	AUGUSTUS	transcript	1228902	1229225	.	+	.	transcript_id "Ledus.S5G010800.t1"; gene_id "Ledus.S5G010800"
Ledus.S5	AUGUSTUS	start_codon	1228902	1228904	.	+	0	transcript_id "Ledus.S5G010800.t1"; gene_id "Ledus.S5G010800"
Ledus.S5	AUGUSTUS	CDS	1228902	1229225	0.2	+	0	transcript_id "Ledus.S5G010800.t1"; gene_id "Ledus.S5G010800"
Ledus.S5	AUGUSTUS	exon	1228902	1229225	.	+	.	transcript_id "Ledus.S5G010800.t1"; gene_id "Ledus.S5G010800"
Ledus.S5	AUGUSTUS	stop_codon	1229226	1229228	.	+	0	transcript_id "Ledus.S5G010800.t1"; gene_id "Ledus.S5G010800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12995.t1 is derived from g6805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2107556	2107828	.	-	.	Ledus.S6G005700
Ledus.S6	AUGUSTUS	transcript	2107556	2107828	.	-	.	transcript_id "Ledus.S6G005700.t1"; gene_id "Ledus.S6G005700"
Ledus.S6	AUGUSTUS	stop_codon	2107553	2107555	.	-	0	transcript_id "Ledus.S6G005700.t1"; gene_id "Ledus.S6G005700"
Ledus.S6	AUGUSTUS	CDS	2107556	2107828	0.96	-	0	transcript_id "Ledus.S6G005700.t1"; gene_id "Ledus.S6G005700"
Ledus.S6	AUGUSTUS	exon	2107556	2107828	.	-	.	transcript_id "Ledus.S6G005700.t1"; gene_id "Ledus.S6G005700"
Ledus.S6	AUGUSTUS	start_codon	2107826	2107828	.	-	0	transcript_id "Ledus.S6G005700.t1"; gene_id "Ledus.S6G005700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4516.t1 is derived from g1953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17476765	17478217	.	-	.	Ledus.S1G193700
Ledus.S1	AUGUSTUS	transcript	17476765	17478217	.	-	.	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	stop_codon	17476762	17476764	.	-	0	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	CDS	17476765	17476844	1	-	2	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	exon	17476765	17476844	.	-	.	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	intron	17476845	17476974	.	-	.	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	CDS	17476975	17477045	0.95	-	1	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	exon	17476975	17477045	.	-	.	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	intron	17477046	17477162	.	-	.	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	CDS	17477163	17477338	1	-	0	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	exon	17477163	17477338	.	-	.	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	intron	17477339	17477449	.	-	.	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	CDS	17477450	17478021	0.94	-	2	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	exon	17477450	17478021	.	-	.	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	intron	17478022	17478117	.	-	.	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	CDS	17478118	17478217	0.44	-	0	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	exon	17478118	17478217	.	-	.	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	start_codon	17478215	17478217	.	-	0	transcript_id "Ledus.S1G193700.t1"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	transcript	17476765	17478217	.	-	.	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	stop_codon	17476762	17476764	.	-	0	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	CDS	17476765	17476844	1	-	2	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	exon	17476765	17476844	.	-	.	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	intron	17476845	17476974	.	-	.	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	CDS	17476975	17477045	0.95	-	1	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	exon	17476975	17477045	.	-	.	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	intron	17477046	17477162	.	-	.	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	CDS	17477163	17477338	1	-	0	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	exon	17477163	17477338	.	-	.	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	intron	17477339	17477449	.	-	.	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	CDS	17477450	17477797	0.67	-	0	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	exon	17477450	17477797	.	-	.	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	intron	17477798	17477883	.	-	.	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	CDS	17477884	17478026	0.54	-	2	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	exon	17477884	17478026	.	-	.	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	intron	17478027	17478117	.	-	.	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	CDS	17478118	17478217	0.5	-	0	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	exon	17478118	17478217	.	-	.	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
Ledus.S1	AUGUSTUS	start_codon	17478215	17478217	.	-	0	transcript_id "Ledus.S1G193700.t2"; gene_id "Ledus.S1G193700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9338.t1 is derived from g10368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6198983	6206009	.	-	.	Ledus.S3G081500
Ledus.S3	AUGUSTUS	transcript	6198983	6206009	.	-	.	transcript_id "Ledus.S3G081500.t1"; gene_id "Ledus.S3G081500"
Ledus.S3	AUGUSTUS	stop_codon	6198980	6198982	.	-	0	transcript_id "Ledus.S3G081500.t1"; gene_id "Ledus.S3G081500"
Ledus.S3	AUGUSTUS	CDS	6198983	6201787	0.98	-	0	transcript_id "Ledus.S3G081500.t1"; gene_id "Ledus.S3G081500"
Ledus.S3	AUGUSTUS	exon	6198983	6201787	.	-	.	transcript_id "Ledus.S3G081500.t1"; gene_id "Ledus.S3G081500"
Ledus.S3	AUGUSTUS	intron	6201788	6201869	.	-	.	transcript_id "Ledus.S3G081500.t1"; gene_id "Ledus.S3G081500"
Ledus.S3	AUGUSTUS	CDS	6201870	6206009	0.97	-	0	transcript_id "Ledus.S3G081500.t1"; gene_id "Ledus.S3G081500"
Ledus.S3	AUGUSTUS	exon	6201870	6206009	.	-	.	transcript_id "Ledus.S3G081500.t1"; gene_id "Ledus.S3G081500"
Ledus.S3	AUGUSTUS	start_codon	6206007	6206009	.	-	0	transcript_id "Ledus.S3G081500.t1"; gene_id "Ledus.S3G081500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4117.t1 is derived from g1553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14779802	14781147	.	+	.	Ledus.S1G153800
Ledus.S1	AUGUSTUS	transcript	14779802	14781147	.	+	.	transcript_id "Ledus.S1G153800.t1"; gene_id "Ledus.S1G153800"
Ledus.S1	AUGUSTUS	start_codon	14779802	14779804	.	+	0	transcript_id "Ledus.S1G153800.t1"; gene_id "Ledus.S1G153800"
Ledus.S1	AUGUSTUS	CDS	14779802	14779859	0.99	+	0	transcript_id "Ledus.S1G153800.t1"; gene_id "Ledus.S1G153800"
Ledus.S1	AUGUSTUS	exon	14779802	14779859	.	+	.	transcript_id "Ledus.S1G153800.t1"; gene_id "Ledus.S1G153800"
Ledus.S1	AUGUSTUS	intron	14779860	14779942	.	+	.	transcript_id "Ledus.S1G153800.t1"; gene_id "Ledus.S1G153800"
Ledus.S1	AUGUSTUS	CDS	14779943	14781147	0.88	+	2	transcript_id "Ledus.S1G153800.t1"; gene_id "Ledus.S1G153800"
Ledus.S1	AUGUSTUS	exon	14779943	14781147	.	+	.	transcript_id "Ledus.S1G153800.t1"; gene_id "Ledus.S1G153800"
Ledus.S1	AUGUSTUS	stop_codon	14781148	14781150	.	+	0	transcript_id "Ledus.S1G153800.t1"; gene_id "Ledus.S1G153800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg251.t1 is derived from g7112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1132141	1133013	.	+	.	Ledus.S2G013300
Ledus.S2	AUGUSTUS	transcript	1132141	1133013	.	+	.	transcript_id "Ledus.S2G013300.t1"; gene_id "Ledus.S2G013300"
Ledus.S2	AUGUSTUS	start_codon	1132141	1132143	.	+	0	transcript_id "Ledus.S2G013300.t1"; gene_id "Ledus.S2G013300"
Ledus.S2	AUGUSTUS	CDS	1132141	1132255	0.63	+	0	transcript_id "Ledus.S2G013300.t1"; gene_id "Ledus.S2G013300"
Ledus.S2	AUGUSTUS	exon	1132141	1132255	.	+	.	transcript_id "Ledus.S2G013300.t1"; gene_id "Ledus.S2G013300"
Ledus.S2	AUGUSTUS	intron	1132256	1132492	.	+	.	transcript_id "Ledus.S2G013300.t1"; gene_id "Ledus.S2G013300"
Ledus.S2	AUGUSTUS	CDS	1132493	1133013	1	+	2	transcript_id "Ledus.S2G013300.t1"; gene_id "Ledus.S2G013300"
Ledus.S2	AUGUSTUS	exon	1132493	1133013	.	+	.	transcript_id "Ledus.S2G013300.t1"; gene_id "Ledus.S2G013300"
Ledus.S2	AUGUSTUS	stop_codon	1133014	1133016	.	+	0	transcript_id "Ledus.S2G013300.t1"; gene_id "Ledus.S2G013300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg925.t1 is derived from g7786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6182673	6183983	.	-	.	Ledus.S2G080700
Ledus.S2	AUGUSTUS	transcript	6182673	6183983	.	-	.	transcript_id "Ledus.S2G080700.t1"; gene_id "Ledus.S2G080700"
Ledus.S2	AUGUSTUS	stop_codon	6182670	6182672	.	-	0	transcript_id "Ledus.S2G080700.t1"; gene_id "Ledus.S2G080700"
Ledus.S2	AUGUSTUS	CDS	6182673	6183983	1	-	0	transcript_id "Ledus.S2G080700.t1"; gene_id "Ledus.S2G080700"
Ledus.S2	AUGUSTUS	exon	6182673	6183983	.	-	.	transcript_id "Ledus.S2G080700.t1"; gene_id "Ledus.S2G080700"
Ledus.S2	AUGUSTUS	start_codon	6183981	6183983	.	-	0	transcript_id "Ledus.S2G080700.t1"; gene_id "Ledus.S2G080700"
Ledus.S2	AUGUSTUS	transcript	6182673	6183167	.	-	.	transcript_id "Ledus.S2G080700.t2"; gene_id "Ledus.S2G080700"
Ledus.S2	AUGUSTUS	stop_codon	6182670	6182672	.	-	0	transcript_id "Ledus.S2G080700.t2"; gene_id "Ledus.S2G080700"
Ledus.S2	AUGUSTUS	CDS	6182673	6183167	0.91	-	0	transcript_id "Ledus.S2G080700.t2"; gene_id "Ledus.S2G080700"
Ledus.S2	AUGUSTUS	exon	6182673	6183167	.	-	.	transcript_id "Ledus.S2G080700.t2"; gene_id "Ledus.S2G080700"
Ledus.S2	AUGUSTUS	start_codon	6183165	6183167	.	-	0	transcript_id "Ledus.S2G080700.t2"; gene_id "Ledus.S2G080700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9700.t1 is derived from g10730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9102308	9104024	.	+	.	Ledus.S3G117700
Ledus.S3	AUGUSTUS	transcript	9102308	9104024	.	+	.	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	start_codon	9102308	9102310	.	+	0	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	CDS	9102308	9102371	0.97	+	0	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	exon	9102308	9102371	.	+	.	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	intron	9102372	9102468	.	+	.	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	CDS	9102469	9103716	1	+	2	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	exon	9102469	9103716	.	+	.	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	intron	9103717	9103815	.	+	.	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	CDS	9103816	9103843	1	+	2	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	exon	9103816	9103843	.	+	.	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	intron	9103844	9103936	.	+	.	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	CDS	9103937	9104024	1	+	1	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	exon	9103937	9104024	.	+	.	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
Ledus.S3	AUGUSTUS	stop_codon	9104025	9104027	.	+	0	transcript_id "Ledus.S3G117700.t1"; gene_id "Ledus.S3G117700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11032.t1 is derived from g4650.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1302870	1304009	.	-	.	Ledus.S4G018800
Ledus.S4	AUGUSTUS	transcript	1302870	1304009	.	-	.	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	stop_codon	1302867	1302869	.	-	0	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	CDS	1302870	1302974	0.95	-	0	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	exon	1302870	1302974	.	-	.	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	intron	1302975	1303085	.	-	.	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	CDS	1303086	1303248	0.95	-	1	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	exon	1303086	1303248	.	-	.	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	intron	1303249	1303374	.	-	.	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	CDS	1303375	1303431	1	-	1	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	exon	1303375	1303431	.	-	.	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	intron	1303432	1303545	.	-	.	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	CDS	1303546	1303583	1	-	0	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	exon	1303546	1303583	.	-	.	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	intron	1303584	1303742	.	-	.	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	CDS	1303743	1304009	0.97	-	0	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	exon	1303743	1304009	.	-	.	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	start_codon	1304007	1304009	.	-	0	transcript_id "Ledus.S4G018800.t1"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	transcript	1302870	1303774	.	-	.	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	stop_codon	1302867	1302869	.	-	0	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	CDS	1302870	1302974	0.97	-	0	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	exon	1302870	1302974	.	-	.	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	intron	1302975	1303085	.	-	.	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	CDS	1303086	1303248	0.93	-	1	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	exon	1303086	1303248	.	-	.	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	intron	1303249	1303374	.	-	.	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	CDS	1303375	1303431	1	-	1	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	exon	1303375	1303431	.	-	.	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	intron	1303432	1303545	.	-	.	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	CDS	1303546	1303583	0.98	-	0	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	exon	1303546	1303583	.	-	.	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	intron	1303584	1303771	.	-	.	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	CDS	1303772	1303774	0.53	-	0	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	exon	1303772	1303774	.	-	.	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
Ledus.S4	AUGUSTUS	start_codon	1303772	1303774	.	-	0	transcript_id "Ledus.S4G018800.t2"; gene_id "Ledus.S4G018800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2659.t1 is derived from g92.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1319436	1319823	.	+	.	Ledus.S1G008000
Ledus.S1	AUGUSTUS	transcript	1319436	1319823	.	+	.	transcript_id "Ledus.S1G008000.t1"; gene_id "Ledus.S1G008000"
Ledus.S1	AUGUSTUS	start_codon	1319436	1319438	.	+	0	transcript_id "Ledus.S1G008000.t1"; gene_id "Ledus.S1G008000"
Ledus.S1	AUGUSTUS	CDS	1319436	1319681	0.79	+	0	transcript_id "Ledus.S1G008000.t1"; gene_id "Ledus.S1G008000"
Ledus.S1	AUGUSTUS	exon	1319436	1319681	.	+	.	transcript_id "Ledus.S1G008000.t1"; gene_id "Ledus.S1G008000"
Ledus.S1	AUGUSTUS	intron	1319682	1319751	.	+	.	transcript_id "Ledus.S1G008000.t1"; gene_id "Ledus.S1G008000"
Ledus.S1	AUGUSTUS	CDS	1319752	1319823	0.95	+	0	transcript_id "Ledus.S1G008000.t1"; gene_id "Ledus.S1G008000"
Ledus.S1	AUGUSTUS	exon	1319752	1319823	.	+	.	transcript_id "Ledus.S1G008000.t1"; gene_id "Ledus.S1G008000"
Ledus.S1	AUGUSTUS	stop_codon	1319824	1319826	.	+	0	transcript_id "Ledus.S1G008000.t1"; gene_id "Ledus.S1G008000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1132.t1 is derived from g7993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7853287	7853940	.	-	.	Ledus.S2G101400
Ledus.S2	AUGUSTUS	transcript	7853287	7853940	.	-	.	transcript_id "Ledus.S2G101400.t1"; gene_id "Ledus.S2G101400"
Ledus.S2	AUGUSTUS	stop_codon	7853284	7853286	.	-	0	transcript_id "Ledus.S2G101400.t1"; gene_id "Ledus.S2G101400"
Ledus.S2	AUGUSTUS	CDS	7853287	7853940	0.9	-	0	transcript_id "Ledus.S2G101400.t1"; gene_id "Ledus.S2G101400"
Ledus.S2	AUGUSTUS	exon	7853287	7853940	.	-	.	transcript_id "Ledus.S2G101400.t1"; gene_id "Ledus.S2G101400"
Ledus.S2	AUGUSTUS	start_codon	7853938	7853940	.	-	0	transcript_id "Ledus.S2G101400.t1"; gene_id "Ledus.S2G101400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4960.t1 is derived from g2398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20889849	20891917	.	+	.	Ledus.S1G238100
Ledus.S1	AUGUSTUS	transcript	20889849	20891917	.	+	.	transcript_id "Ledus.S1G238100.t1"; gene_id "Ledus.S1G238100"
Ledus.S1	AUGUSTUS	start_codon	20889849	20889851	.	+	0	transcript_id "Ledus.S1G238100.t1"; gene_id "Ledus.S1G238100"
Ledus.S1	AUGUSTUS	CDS	20889849	20891240	0.65	+	0	transcript_id "Ledus.S1G238100.t1"; gene_id "Ledus.S1G238100"
Ledus.S1	AUGUSTUS	exon	20889849	20891240	.	+	.	transcript_id "Ledus.S1G238100.t1"; gene_id "Ledus.S1G238100"
Ledus.S1	AUGUSTUS	intron	20891241	20891352	.	+	.	transcript_id "Ledus.S1G238100.t1"; gene_id "Ledus.S1G238100"
Ledus.S1	AUGUSTUS	CDS	20891353	20891750	0.89	+	0	transcript_id "Ledus.S1G238100.t1"; gene_id "Ledus.S1G238100"
Ledus.S1	AUGUSTUS	exon	20891353	20891750	.	+	.	transcript_id "Ledus.S1G238100.t1"; gene_id "Ledus.S1G238100"
Ledus.S1	AUGUSTUS	intron	20891751	20891913	.	+	.	transcript_id "Ledus.S1G238100.t1"; gene_id "Ledus.S1G238100"
Ledus.S1	AUGUSTUS	CDS	20891914	20891917	0.51	+	1	transcript_id "Ledus.S1G238100.t1"; gene_id "Ledus.S1G238100"
Ledus.S1	AUGUSTUS	exon	20891914	20891917	.	+	.	transcript_id "Ledus.S1G238100.t1"; gene_id "Ledus.S1G238100"
Ledus.S1	AUGUSTUS	stop_codon	20891918	20891920	.	+	0	transcript_id "Ledus.S1G238100.t1"; gene_id "Ledus.S1G238100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1329.t1 is derived from g8190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9293126	9293685	.	-	.	Ledus.S2G121100
Ledus.S2	AUGUSTUS	transcript	9293126	9293685	.	-	.	transcript_id "Ledus.S2G121100.t1"; gene_id "Ledus.S2G121100"
Ledus.S2	AUGUSTUS	stop_codon	9293123	9293125	.	-	0	transcript_id "Ledus.S2G121100.t1"; gene_id "Ledus.S2G121100"
Ledus.S2	AUGUSTUS	CDS	9293126	9293224	0.95	-	0	transcript_id "Ledus.S2G121100.t1"; gene_id "Ledus.S2G121100"
Ledus.S2	AUGUSTUS	exon	9293126	9293224	.	-	.	transcript_id "Ledus.S2G121100.t1"; gene_id "Ledus.S2G121100"
Ledus.S2	AUGUSTUS	intron	9293225	9293312	.	-	.	transcript_id "Ledus.S2G121100.t1"; gene_id "Ledus.S2G121100"
Ledus.S2	AUGUSTUS	CDS	9293313	9293518	1	-	2	transcript_id "Ledus.S2G121100.t1"; gene_id "Ledus.S2G121100"
Ledus.S2	AUGUSTUS	exon	9293313	9293518	.	-	.	transcript_id "Ledus.S2G121100.t1"; gene_id "Ledus.S2G121100"
Ledus.S2	AUGUSTUS	intron	9293519	9293606	.	-	.	transcript_id "Ledus.S2G121100.t1"; gene_id "Ledus.S2G121100"
Ledus.S2	AUGUSTUS	CDS	9293607	9293685	0.99	-	0	transcript_id "Ledus.S2G121100.t1"; gene_id "Ledus.S2G121100"
Ledus.S2	AUGUSTUS	exon	9293607	9293685	.	-	.	transcript_id "Ledus.S2G121100.t1"; gene_id "Ledus.S2G121100"
Ledus.S2	AUGUSTUS	start_codon	9293683	9293685	.	-	0	transcript_id "Ledus.S2G121100.t1"; gene_id "Ledus.S2G121100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11317.t1 is derived from g4935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3550044	3555441	.	-	.	Ledus.S4G047300
Ledus.S4	AUGUSTUS	transcript	3550044	3555441	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	stop_codon	3550041	3550043	.	-	0	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3550044	3550166	0.99	-	0	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3550044	3550166	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3550167	3550337	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3550338	3550396	0.87	-	2	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3550338	3550396	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3550397	3550566	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3550567	3550686	0.54	-	2	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3550567	3550686	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3550687	3550820	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3550821	3550941	0.29	-	0	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3550821	3550941	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3550942	3551238	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3551239	3551285	0.29	-	2	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3551239	3551285	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3551286	3551381	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3551382	3551420	0.9	-	2	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3551382	3551420	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3551421	3551544	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3551545	3551648	0.74	-	1	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3551545	3551648	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3551649	3551782	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3551783	3551886	0.97	-	0	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3551783	3551886	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3551887	3551966	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3551967	3552139	0.95	-	2	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3551967	3552139	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3552140	3552256	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3552257	3552473	0.98	-	0	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3552257	3552473	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3552474	3552676	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3552677	3552904	1	-	0	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3552677	3552904	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3552905	3553066	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3553067	3553135	0.85	-	0	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3553067	3553135	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3553136	3553308	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3553309	3555441	0.44	-	0	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3553309	3555441	.	-	.	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	start_codon	3555439	3555441	.	-	0	transcript_id "Ledus.S4G047300.t1"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	transcript	3550044	3555441	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	stop_codon	3550041	3550043	.	-	0	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3550044	3550166	0.98	-	0	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3550044	3550166	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3550167	3550337	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3550338	3550396	0.89	-	2	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3550338	3550396	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3550397	3550566	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3550567	3550686	0.59	-	2	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3550567	3550686	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3550687	3550820	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3550821	3550941	0.29	-	0	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3550821	3550941	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3550942	3551238	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3551239	3551285	0.28	-	2	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3551239	3551285	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3551286	3551381	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3551382	3551420	0.65	-	2	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3551382	3551420	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3551421	3551544	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3551545	3551648	0.56	-	1	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3551545	3551648	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3551649	3551782	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3551783	3551881	0.55	-	1	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3551783	3551881	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3551882	3551966	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3551967	3551995	0.27	-	0	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3551967	3551995	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3551996	3552101	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3552102	3552139	0.57	-	2	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3552102	3552139	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3552140	3552256	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3552257	3552473	1	-	0	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3552257	3552473	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3552474	3552676	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3552677	3552904	1	-	0	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3552677	3552904	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3552905	3553066	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3553067	3553135	0.84	-	0	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3553067	3553135	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	intron	3553136	3553308	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	CDS	3553309	3555441	0.39	-	0	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	exon	3553309	3555441	.	-	.	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
Ledus.S4	AUGUSTUS	start_codon	3555439	3555441	.	-	0	transcript_id "Ledus.S4G047300.t2"; gene_id "Ledus.S4G047300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6033.t1 is derived from g3476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28603249	28606015	.	+	.	Ledus.S1G345400
Ledus.S1	AUGUSTUS	transcript	28603249	28606015	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	start_codon	28603249	28603251	.	+	0	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	CDS	28603249	28603439	0.98	+	0	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	exon	28603249	28603439	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	intron	28603440	28603537	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	CDS	28603538	28603646	1	+	1	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	exon	28603538	28603646	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	intron	28603647	28603728	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	CDS	28603729	28603959	0.97	+	0	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	exon	28603729	28603959	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	intron	28603960	28604066	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	CDS	28604067	28604226	0.68	+	0	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	exon	28604067	28604226	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	intron	28604227	28604328	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	CDS	28604329	28604384	1	+	2	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	exon	28604329	28604384	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	intron	28604385	28604527	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	CDS	28604528	28604680	1	+	0	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	exon	28604528	28604680	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	intron	28604681	28604754	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	CDS	28604755	28604852	1	+	0	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	exon	28604755	28604852	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	intron	28604853	28604999	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	CDS	28605000	28605080	1	+	1	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	exon	28605000	28605080	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	intron	28605081	28605182	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	CDS	28605183	28605416	1	+	1	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	exon	28605183	28605416	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	intron	28605417	28605541	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	CDS	28605542	28605676	1	+	1	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	exon	28605542	28605676	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	intron	28605677	28605990	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	CDS	28605991	28606015	1	+	1	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	exon	28605991	28606015	.	+	.	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
Ledus.S1	AUGUSTUS	stop_codon	28606016	28606018	.	+	0	transcript_id "Ledus.S1G345400.t1"; gene_id "Ledus.S1G345400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7889.t1 is derived from g12560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7694964	7696462	.	-	.	Ledus.S5G066700
Ledus.S5	AUGUSTUS	transcript	7694964	7696462	.	-	.	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	stop_codon	7694961	7694963	.	-	0	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	CDS	7694964	7695044	0.89	-	0	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	exon	7694964	7695044	.	-	.	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	intron	7695045	7695147	.	-	.	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	CDS	7695148	7695252	0.98	-	0	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	exon	7695148	7695252	.	-	.	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	intron	7695253	7695390	.	-	.	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	CDS	7695391	7695514	1	-	1	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	exon	7695391	7695514	.	-	.	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	intron	7695515	7695604	.	-	.	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	CDS	7695605	7695858	0.45	-	0	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	exon	7695605	7695858	.	-	.	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	intron	7695859	7695967	.	-	.	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	CDS	7695968	7696462	0.53	-	0	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	exon	7695968	7696462	.	-	.	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
Ledus.S5	AUGUSTUS	start_codon	7696460	7696462	.	-	0	transcript_id "Ledus.S5G066700.t1"; gene_id "Ledus.S5G066700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3869.t1 is derived from g1305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13271348	13272113	.	-	.	Ledus.S1G129000
Ledus.S1	AUGUSTUS	transcript	13271348	13272113	.	-	.	transcript_id "Ledus.S1G129000.t1"; gene_id "Ledus.S1G129000"
Ledus.S1	AUGUSTUS	stop_codon	13271345	13271347	.	-	0	transcript_id "Ledus.S1G129000.t1"; gene_id "Ledus.S1G129000"
Ledus.S1	AUGUSTUS	CDS	13271348	13271662	1	-	0	transcript_id "Ledus.S1G129000.t1"; gene_id "Ledus.S1G129000"
Ledus.S1	AUGUSTUS	exon	13271348	13271662	.	-	.	transcript_id "Ledus.S1G129000.t1"; gene_id "Ledus.S1G129000"
Ledus.S1	AUGUSTUS	intron	13271663	13272092	.	-	.	transcript_id "Ledus.S1G129000.t1"; gene_id "Ledus.S1G129000"
Ledus.S1	AUGUSTUS	CDS	13272093	13272113	0.92	-	0	transcript_id "Ledus.S1G129000.t1"; gene_id "Ledus.S1G129000"
Ledus.S1	AUGUSTUS	exon	13272093	13272113	.	-	.	transcript_id "Ledus.S1G129000.t1"; gene_id "Ledus.S1G129000"
Ledus.S1	AUGUSTUS	start_codon	13272111	13272113	.	-	0	transcript_id "Ledus.S1G129000.t1"; gene_id "Ledus.S1G129000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4243.t1 is derived from g1679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15735383	15735880	.	-	.	Ledus.S1G166400
Ledus.S1	AUGUSTUS	transcript	15735383	15735880	.	-	.	transcript_id "Ledus.S1G166400.t1"; gene_id "Ledus.S1G166400"
Ledus.S1	AUGUSTUS	stop_codon	15735380	15735382	.	-	0	transcript_id "Ledus.S1G166400.t1"; gene_id "Ledus.S1G166400"
Ledus.S1	AUGUSTUS	CDS	15735383	15735880	0.52	-	0	transcript_id "Ledus.S1G166400.t1"; gene_id "Ledus.S1G166400"
Ledus.S1	AUGUSTUS	exon	15735383	15735880	.	-	.	transcript_id "Ledus.S1G166400.t1"; gene_id "Ledus.S1G166400"
Ledus.S1	AUGUSTUS	start_codon	15735878	15735880	.	-	0	transcript_id "Ledus.S1G166400.t1"; gene_id "Ledus.S1G166400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1556.t1 is derived from g8417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10918738	10919004	.	-	.	Ledus.S2G143800
Ledus.S2	AUGUSTUS	transcript	10918738	10919004	.	-	.	transcript_id "Ledus.S2G143800.t1"; gene_id "Ledus.S2G143800"
Ledus.S2	AUGUSTUS	stop_codon	10918735	10918737	.	-	0	transcript_id "Ledus.S2G143800.t1"; gene_id "Ledus.S2G143800"
Ledus.S2	AUGUSTUS	CDS	10918738	10919004	1	-	0	transcript_id "Ledus.S2G143800.t1"; gene_id "Ledus.S2G143800"
Ledus.S2	AUGUSTUS	exon	10918738	10919004	.	-	.	transcript_id "Ledus.S2G143800.t1"; gene_id "Ledus.S2G143800"
Ledus.S2	AUGUSTUS	start_codon	10919002	10919004	.	-	0	transcript_id "Ledus.S2G143800.t1"; gene_id "Ledus.S2G143800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7951.t1 is derived from g12622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8098305	8099676	.	-	.	Ledus.S5G072900
Ledus.S5	AUGUSTUS	transcript	8098305	8099676	.	-	.	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	stop_codon	8098302	8098304	.	-	0	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	CDS	8098305	8098446	1	-	1	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	exon	8098305	8098446	.	-	.	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	intron	8098447	8098541	.	-	.	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	CDS	8098542	8098783	1	-	0	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	exon	8098542	8098783	.	-	.	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	intron	8098784	8098856	.	-	.	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	CDS	8098857	8099063	1	-	0	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	exon	8098857	8099063	.	-	.	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	intron	8099064	8099136	.	-	.	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	CDS	8099137	8099326	1	-	1	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	exon	8099137	8099326	.	-	.	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	intron	8099327	8099407	.	-	.	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	CDS	8099408	8099676	0.3	-	0	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	exon	8099408	8099676	.	-	.	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	start_codon	8099674	8099676	.	-	0	transcript_id "Ledus.S5G072900.t1"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	transcript	8098336	8099676	.	-	.	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	stop_codon	8098333	8098335	.	-	0	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	CDS	8098336	8098363	0.87	-	1	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	exon	8098336	8098363	.	-	.	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	intron	8098364	8098541	.	-	.	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	CDS	8098542	8098783	0.96	-	0	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	exon	8098542	8098783	.	-	.	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	intron	8098784	8098856	.	-	.	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	CDS	8098857	8099063	1	-	0	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	exon	8098857	8099063	.	-	.	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	intron	8099064	8099136	.	-	.	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	CDS	8099137	8099326	1	-	1	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	exon	8099137	8099326	.	-	.	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	intron	8099327	8099407	.	-	.	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	CDS	8099408	8099676	0.35	-	0	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	exon	8099408	8099676	.	-	.	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
Ledus.S5	AUGUSTUS	start_codon	8099674	8099676	.	-	0	transcript_id "Ledus.S5G072900.t2"; gene_id "Ledus.S5G072900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4458.t1 is derived from g1894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17180876	17185394	.	+	.	Ledus.S1G187900
Ledus.S1	AUGUSTUS	transcript	17180876	17185394	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	start_codon	17180876	17180878	.	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17180876	17180981	0.8	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17180876	17180981	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17180982	17181077	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17181078	17181130	0.81	+	2	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17181078	17181130	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17181131	17181205	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17181206	17181279	1	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17181206	17181279	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17181280	17181356	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17181357	17181498	0.93	+	1	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17181357	17181498	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17181499	17181588	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17181589	17181697	0.93	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17181589	17181697	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17181698	17181771	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17181772	17181789	0.92	+	2	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17181772	17181789	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17181790	17181857	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17181858	17181937	0.92	+	2	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17181858	17181937	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17181938	17182010	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17182011	17182097	1	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17182011	17182097	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17182098	17182190	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17182191	17182259	1	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17182191	17182259	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17182260	17182325	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17182326	17182419	1	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17182326	17182419	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17182420	17182498	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17182499	17182581	1	+	2	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17182499	17182581	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17182582	17182674	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17182675	17182703	0.41	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17182675	17182703	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17182704	17182890	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17182891	17183019	0.26	+	1	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17182891	17183019	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17183020	17183095	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17183096	17183203	1	+	1	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17183096	17183203	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17183204	17183298	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17183299	17183372	1	+	1	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17183299	17183372	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17183373	17183462	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17183463	17183588	1	+	2	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17183463	17183588	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17183589	17183663	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17183664	17183731	1	+	2	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17183664	17183731	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17183732	17183819	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17183820	17183942	0.49	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17183820	17183942	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17183943	17184082	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17184083	17184133	0.95	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17184083	17184133	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17184134	17184258	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17184259	17184315	1	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17184259	17184315	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17184316	17184483	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17184484	17184636	1	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17184484	17184636	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17184637	17184719	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17184720	17184811	1	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17184720	17184811	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17184812	17184886	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17184887	17184996	1	+	1	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17184887	17184996	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17184997	17185094	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17185095	17185161	0.87	+	2	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17185095	17185161	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	intron	17185162	17185258	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	CDS	17185259	17185394	1	+	1	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	exon	17185259	17185394	.	+	.	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
Ledus.S1	AUGUSTUS	stop_codon	17185395	17185397	.	+	0	transcript_id "Ledus.S1G187900.t1"; gene_id "Ledus.S1G187900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5438.t1 is derived from g2877.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24211809	24214703	.	+	.	Ledus.S1G285900
Ledus.S1	AUGUSTUS	transcript	24211809	24214703	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	start_codon	24211809	24211811	.	+	0	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24211809	24211830	0.56	+	0	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24211809	24211830	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24211831	24212480	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24212481	24212555	1	+	2	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24212481	24212555	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24212556	24212818	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24212819	24212986	0.81	+	2	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24212819	24212986	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24212987	24213176	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24213177	24213288	0.84	+	2	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24213177	24213288	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24213289	24213501	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24213502	24213597	0.99	+	1	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24213502	24213597	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24213598	24213708	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24213709	24214043	0.67	+	1	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24213709	24214043	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24214044	24214474	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24214475	24214604	0.74	+	2	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24214475	24214604	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24214605	24214702	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24214703	24214703	0.95	+	1	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24214703	24214703	.	+	.	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	stop_codon	24214704	24214706	.	+	0	transcript_id "Ledus.S1G285900.t1"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	transcript	24211814	24214703	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	start_codon	24211814	24211816	.	+	0	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24211814	24211830	0.78	+	0	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24211814	24211830	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24211831	24212480	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24212481	24212555	1	+	1	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24212481	24212555	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24212556	24212825	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24212826	24212986	0.77	+	1	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24212826	24212986	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24212987	24213176	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24213177	24213288	0.78	+	2	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24213177	24213288	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24213289	24213501	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24213502	24213597	0.94	+	1	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24213502	24213597	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24213598	24213708	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24213709	24214043	0.65	+	1	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24213709	24214043	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24214044	24214474	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24214475	24214604	0.72	+	2	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24214475	24214604	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	intron	24214605	24214702	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	CDS	24214703	24214703	0.99	+	1	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	exon	24214703	24214703	.	+	.	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
Ledus.S1	AUGUSTUS	stop_codon	24214704	24214706	.	+	0	transcript_id "Ledus.S1G285900.t2"; gene_id "Ledus.S1G285900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6165.t1 is derived from g3608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29342377	29343279	.	-	.	Ledus.S1G358600
Ledus.S1	AUGUSTUS	transcript	29342377	29343279	.	-	.	transcript_id "Ledus.S1G358600.t1"; gene_id "Ledus.S1G358600"
Ledus.S1	AUGUSTUS	stop_codon	29342374	29342376	.	-	0	transcript_id "Ledus.S1G358600.t1"; gene_id "Ledus.S1G358600"
Ledus.S1	AUGUSTUS	CDS	29342377	29343279	0.68	-	0	transcript_id "Ledus.S1G358600.t1"; gene_id "Ledus.S1G358600"
Ledus.S1	AUGUSTUS	exon	29342377	29343279	.	-	.	transcript_id "Ledus.S1G358600.t1"; gene_id "Ledus.S1G358600"
Ledus.S1	AUGUSTUS	start_codon	29343277	29343279	.	-	0	transcript_id "Ledus.S1G358600.t1"; gene_id "Ledus.S1G358600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1174.t1 is derived from g8035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8204478	8206016	.	-	.	Ledus.S2G105600
Ledus.S2	AUGUSTUS	transcript	8204478	8206016	.	-	.	transcript_id "Ledus.S2G105600.t1"; gene_id "Ledus.S2G105600"
Ledus.S2	AUGUSTUS	stop_codon	8204475	8204477	.	-	0	transcript_id "Ledus.S2G105600.t1"; gene_id "Ledus.S2G105600"
Ledus.S2	AUGUSTUS	CDS	8204478	8204894	0.92	-	0	transcript_id "Ledus.S2G105600.t1"; gene_id "Ledus.S2G105600"
Ledus.S2	AUGUSTUS	exon	8204478	8204894	.	-	.	transcript_id "Ledus.S2G105600.t1"; gene_id "Ledus.S2G105600"
Ledus.S2	AUGUSTUS	intron	8204895	8204981	.	-	.	transcript_id "Ledus.S2G105600.t1"; gene_id "Ledus.S2G105600"
Ledus.S2	AUGUSTUS	CDS	8204982	8205473	1	-	0	transcript_id "Ledus.S2G105600.t1"; gene_id "Ledus.S2G105600"
Ledus.S2	AUGUSTUS	exon	8204982	8205473	.	-	.	transcript_id "Ledus.S2G105600.t1"; gene_id "Ledus.S2G105600"
Ledus.S2	AUGUSTUS	intron	8205474	8205569	.	-	.	transcript_id "Ledus.S2G105600.t1"; gene_id "Ledus.S2G105600"
Ledus.S2	AUGUSTUS	CDS	8205570	8206016	0.99	-	0	transcript_id "Ledus.S2G105600.t1"; gene_id "Ledus.S2G105600"
Ledus.S2	AUGUSTUS	exon	8205570	8206016	.	-	.	transcript_id "Ledus.S2G105600.t1"; gene_id "Ledus.S2G105600"
Ledus.S2	AUGUSTUS	start_codon	8206014	8206016	.	-	0	transcript_id "Ledus.S2G105600.t1"; gene_id "Ledus.S2G105600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11808.t1 is derived from g5427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6873761	6874833	.	-	.	Ledus.S4G096400
Ledus.S4	AUGUSTUS	transcript	6873761	6874833	.	-	.	transcript_id "Ledus.S4G096400.t1"; gene_id "Ledus.S4G096400"
Ledus.S4	AUGUSTUS	stop_codon	6873758	6873760	.	-	0	transcript_id "Ledus.S4G096400.t1"; gene_id "Ledus.S4G096400"
Ledus.S4	AUGUSTUS	CDS	6873761	6874057	1	-	0	transcript_id "Ledus.S4G096400.t1"; gene_id "Ledus.S4G096400"
Ledus.S4	AUGUSTUS	exon	6873761	6874057	.	-	.	transcript_id "Ledus.S4G096400.t1"; gene_id "Ledus.S4G096400"
Ledus.S4	AUGUSTUS	intron	6874058	6874146	.	-	.	transcript_id "Ledus.S4G096400.t1"; gene_id "Ledus.S4G096400"
Ledus.S4	AUGUSTUS	CDS	6874147	6874833	0.93	-	0	transcript_id "Ledus.S4G096400.t1"; gene_id "Ledus.S4G096400"
Ledus.S4	AUGUSTUS	exon	6874147	6874833	.	-	.	transcript_id "Ledus.S4G096400.t1"; gene_id "Ledus.S4G096400"
Ledus.S4	AUGUSTUS	start_codon	6874831	6874833	.	-	0	transcript_id "Ledus.S4G096400.t1"; gene_id "Ledus.S4G096400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1372.t1 is derived from g8233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9559702	9563405	.	+	.	Ledus.S2G125400
Ledus.S2	AUGUSTUS	transcript	9559702	9563405	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	start_codon	9559702	9559704	.	+	0	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9559702	9560016	0.93	+	0	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9559702	9560016	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9560017	9560092	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9560093	9560414	0.8	+	0	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9560093	9560414	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9560415	9560501	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9560502	9560934	0.8	+	2	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9560502	9560934	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9560935	9561038	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9561039	9561087	1	+	1	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9561039	9561087	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9561088	9561158	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9561159	9561230	0.99	+	0	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9561159	9561230	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9561231	9561316	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9561317	9561380	0.35	+	0	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9561317	9561380	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9561381	9561538	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9561539	9561656	0.34	+	2	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9561539	9561656	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9561657	9561742	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9561743	9561989	0.79	+	1	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9561743	9561989	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9561990	9562072	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9562073	9562177	0.98	+	0	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9562073	9562177	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9562178	9562273	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9562274	9562318	1	+	0	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9562274	9562318	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9562319	9562403	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9562404	9562571	0.97	+	0	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9562404	9562571	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9562572	9562677	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9562678	9562968	0.98	+	0	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9562678	9562968	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9562969	9563067	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9563068	9563204	1	+	0	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9563068	9563204	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	intron	9563205	9563314	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	CDS	9563315	9563405	0.97	+	1	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	exon	9563315	9563405	.	+	.	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
Ledus.S2	AUGUSTUS	stop_codon	9563406	9563408	.	+	0	transcript_id "Ledus.S2G125400.t1"; gene_id "Ledus.S2G125400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11025.t1 is derived from g4643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1260134	1261977	.	-	.	Ledus.S4G018100
Ledus.S4	AUGUSTUS	transcript	1260134	1261977	.	-	.	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	stop_codon	1260131	1260133	.	-	0	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	CDS	1260134	1260150	0.7	-	2	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	exon	1260134	1260150	.	-	.	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	intron	1260151	1260450	.	-	.	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	CDS	1260451	1260484	0.71	-	0	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	exon	1260451	1260484	.	-	.	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	intron	1260485	1260672	.	-	.	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	CDS	1260673	1261436	0.29	-	2	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	exon	1260673	1261436	.	-	.	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	intron	1261437	1261512	.	-	.	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	CDS	1261513	1261520	0.43	-	1	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	exon	1261513	1261520	.	-	.	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	intron	1261521	1261750	.	-	.	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	CDS	1261751	1261977	0.9	-	0	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	exon	1261751	1261977	.	-	.	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
Ledus.S4	AUGUSTUS	start_codon	1261975	1261977	.	-	0	transcript_id "Ledus.S4G018100.t1"; gene_id "Ledus.S4G018100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8464.t1 is derived from g13136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11869129	11869655	.	+	.	Ledus.S5G124200
Ledus.S5	AUGUSTUS	transcript	11869129	11869655	.	+	.	transcript_id "Ledus.S5G124200.t1"; gene_id "Ledus.S5G124200"
Ledus.S5	AUGUSTUS	start_codon	11869129	11869131	.	+	0	transcript_id "Ledus.S5G124200.t1"; gene_id "Ledus.S5G124200"
Ledus.S5	AUGUSTUS	CDS	11869129	11869397	0.89	+	0	transcript_id "Ledus.S5G124200.t1"; gene_id "Ledus.S5G124200"
Ledus.S5	AUGUSTUS	exon	11869129	11869397	.	+	.	transcript_id "Ledus.S5G124200.t1"; gene_id "Ledus.S5G124200"
Ledus.S5	AUGUSTUS	intron	11869398	11869654	.	+	.	transcript_id "Ledus.S5G124200.t1"; gene_id "Ledus.S5G124200"
Ledus.S5	AUGUSTUS	CDS	11869655	11869655	0.52	+	1	transcript_id "Ledus.S5G124200.t1"; gene_id "Ledus.S5G124200"
Ledus.S5	AUGUSTUS	exon	11869655	11869655	.	+	.	transcript_id "Ledus.S5G124200.t1"; gene_id "Ledus.S5G124200"
Ledus.S5	AUGUSTUS	stop_codon	11869656	11869658	.	+	0	transcript_id "Ledus.S5G124200.t1"; gene_id "Ledus.S5G124200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg622.t1 is derived from g7483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3720160	3720922	.	+	.	Ledus.S2G050400
Ledus.S2	AUGUSTUS	transcript	3720160	3720922	.	+	.	transcript_id "Ledus.S2G050400.t1"; gene_id "Ledus.S2G050400"
Ledus.S2	AUGUSTUS	start_codon	3720160	3720162	.	+	0	transcript_id "Ledus.S2G050400.t1"; gene_id "Ledus.S2G050400"
Ledus.S2	AUGUSTUS	CDS	3720160	3720193	1	+	0	transcript_id "Ledus.S2G050400.t1"; gene_id "Ledus.S2G050400"
Ledus.S2	AUGUSTUS	exon	3720160	3720193	.	+	.	transcript_id "Ledus.S2G050400.t1"; gene_id "Ledus.S2G050400"
Ledus.S2	AUGUSTUS	intron	3720194	3720264	.	+	.	transcript_id "Ledus.S2G050400.t1"; gene_id "Ledus.S2G050400"
Ledus.S2	AUGUSTUS	CDS	3720265	3720422	0.9	+	2	transcript_id "Ledus.S2G050400.t1"; gene_id "Ledus.S2G050400"
Ledus.S2	AUGUSTUS	exon	3720265	3720422	.	+	.	transcript_id "Ledus.S2G050400.t1"; gene_id "Ledus.S2G050400"
Ledus.S2	AUGUSTUS	intron	3720423	3720742	.	+	.	transcript_id "Ledus.S2G050400.t1"; gene_id "Ledus.S2G050400"
Ledus.S2	AUGUSTUS	CDS	3720743	3720922	0.31	+	0	transcript_id "Ledus.S2G050400.t1"; gene_id "Ledus.S2G050400"
Ledus.S2	AUGUSTUS	exon	3720743	3720922	.	+	.	transcript_id "Ledus.S2G050400.t1"; gene_id "Ledus.S2G050400"
Ledus.S2	AUGUSTUS	stop_codon	3720923	3720925	.	+	0	transcript_id "Ledus.S2G050400.t1"; gene_id "Ledus.S2G050400"
# This transcript jg3278.t2 is derived from g713.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3278.t3 is derived from g713.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3279.t1 is derived from g714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7229834	7231548	.	-	.	Ledus.S1G070000
Ledus.S1	AUGUSTUS	transcript	7229834	7231548	.	-	.	transcript_id "Ledus.S1G070000.t1"; gene_id "Ledus.S1G070000"
Ledus.S1	AUGUSTUS	stop_codon	7229831	7229833	.	-	0	transcript_id "Ledus.S1G070000.t1"; gene_id "Ledus.S1G070000"
Ledus.S1	AUGUSTUS	CDS	7229834	7230823	1	-	0	transcript_id "Ledus.S1G070000.t1"; gene_id "Ledus.S1G070000"
Ledus.S1	AUGUSTUS	exon	7229834	7230823	.	-	.	transcript_id "Ledus.S1G070000.t1"; gene_id "Ledus.S1G070000"
Ledus.S1	AUGUSTUS	intron	7230824	7230905	.	-	.	transcript_id "Ledus.S1G070000.t1"; gene_id "Ledus.S1G070000"
Ledus.S1	AUGUSTUS	CDS	7230906	7231390	1	-	2	transcript_id "Ledus.S1G070000.t1"; gene_id "Ledus.S1G070000"
Ledus.S1	AUGUSTUS	exon	7230906	7231390	.	-	.	transcript_id "Ledus.S1G070000.t1"; gene_id "Ledus.S1G070000"
Ledus.S1	AUGUSTUS	intron	7231391	7231493	.	-	.	transcript_id "Ledus.S1G070000.t1"; gene_id "Ledus.S1G070000"
Ledus.S1	AUGUSTUS	CDS	7231494	7231548	0.92	-	0	transcript_id "Ledus.S1G070000.t1"; gene_id "Ledus.S1G070000"
Ledus.S1	AUGUSTUS	exon	7231494	7231548	.	-	.	transcript_id "Ledus.S1G070000.t1"; gene_id "Ledus.S1G070000"
Ledus.S1	AUGUSTUS	start_codon	7231546	7231548	.	-	0	transcript_id "Ledus.S1G070000.t1"; gene_id "Ledus.S1G070000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4867.t1 is derived from g2305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20438767	20440943	.	+	.	Ledus.S1G228800
Ledus.S1	AUGUSTUS	transcript	20438767	20440943	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	start_codon	20438767	20438769	.	+	0	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	CDS	20438767	20438896	0.36	+	0	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	exon	20438767	20438896	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	intron	20438897	20439139	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	CDS	20439140	20439639	0.99	+	2	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	exon	20439140	20439639	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	intron	20439640	20439729	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	CDS	20439730	20439863	1	+	0	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	exon	20439730	20439863	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	intron	20439864	20439962	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	CDS	20439963	20440110	1	+	1	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	exon	20439963	20440110	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	intron	20440111	20440227	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	CDS	20440228	20440306	0.99	+	0	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	exon	20440228	20440306	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	intron	20440307	20440388	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	CDS	20440389	20440549	1	+	2	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	exon	20440389	20440549	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	intron	20440550	20440633	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	CDS	20440634	20440775	1	+	0	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	exon	20440634	20440775	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	intron	20440776	20440866	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	CDS	20440867	20440943	1	+	2	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	exon	20440867	20440943	.	+	.	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
Ledus.S1	AUGUSTUS	stop_codon	20440944	20440946	.	+	0	transcript_id "Ledus.S1G228800.t1"; gene_id "Ledus.S1G228800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7852.t1 is derived from g12523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7497284	7498656	.	+	.	Ledus.S5G063000
Ledus.S5	AUGUSTUS	transcript	7497284	7498656	.	+	.	transcript_id "Ledus.S5G063000.t1"; gene_id "Ledus.S5G063000"
Ledus.S5	AUGUSTUS	start_codon	7497284	7497286	.	+	0	transcript_id "Ledus.S5G063000.t1"; gene_id "Ledus.S5G063000"
Ledus.S5	AUGUSTUS	CDS	7497284	7497856	0.93	+	0	transcript_id "Ledus.S5G063000.t1"; gene_id "Ledus.S5G063000"
Ledus.S5	AUGUSTUS	exon	7497284	7497856	.	+	.	transcript_id "Ledus.S5G063000.t1"; gene_id "Ledus.S5G063000"
Ledus.S5	AUGUSTUS	intron	7497857	7497954	.	+	.	transcript_id "Ledus.S5G063000.t1"; gene_id "Ledus.S5G063000"
Ledus.S5	AUGUSTUS	CDS	7497955	7498656	1	+	0	transcript_id "Ledus.S5G063000.t1"; gene_id "Ledus.S5G063000"
Ledus.S5	AUGUSTUS	exon	7497955	7498656	.	+	.	transcript_id "Ledus.S5G063000.t1"; gene_id "Ledus.S5G063000"
Ledus.S5	AUGUSTUS	stop_codon	7498657	7498659	.	+	0	transcript_id "Ledus.S5G063000.t1"; gene_id "Ledus.S5G063000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7351.t1 is derived from g12022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1385824	1387567	.	-	.	Ledus.S5G012900
Ledus.S5	AUGUSTUS	transcript	1385824	1387567	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	stop_codon	1385821	1385823	.	-	0	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	CDS	1385824	1386131	1	-	2	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	exon	1385824	1386131	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	intron	1386132	1386214	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	CDS	1386215	1386413	1	-	0	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	exon	1386215	1386413	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	intron	1386414	1386488	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	CDS	1386489	1386631	1	-	2	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	exon	1386489	1386631	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	intron	1386632	1386717	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	CDS	1386718	1386851	1	-	1	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	exon	1386718	1386851	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	intron	1386852	1386938	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	CDS	1386939	1387083	1	-	2	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	exon	1386939	1387083	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	intron	1387084	1387173	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	CDS	1387174	1387342	0.93	-	0	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	exon	1387174	1387342	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	intron	1387343	1387414	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	CDS	1387415	1387567	0.86	-	0	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	exon	1387415	1387567	.	-	.	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
Ledus.S5	AUGUSTUS	start_codon	1387565	1387567	.	-	0	transcript_id "Ledus.S5G012900.t1"; gene_id "Ledus.S5G012900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5221.t1 is derived from g2660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22538876	22540758	.	+	.	Ledus.S1G264200
Ledus.S1	AUGUSTUS	transcript	22538876	22540758	.	+	.	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	start_codon	22538876	22538878	.	+	0	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	CDS	22538876	22539177	0.93	+	0	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	exon	22538876	22539177	.	+	.	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	intron	22539178	22539248	.	+	.	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	CDS	22539249	22539417	0.33	+	1	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	exon	22539249	22539417	.	+	.	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	intron	22539418	22539686	.	+	.	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	CDS	22539687	22539756	0.71	+	0	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	exon	22539687	22539756	.	+	.	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	intron	22539757	22539859	.	+	.	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	CDS	22539860	22540059	0.85	+	2	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	exon	22539860	22540059	.	+	.	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	intron	22540060	22540128	.	+	.	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	CDS	22540129	22540758	0.91	+	0	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	exon	22540129	22540758	.	+	.	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
Ledus.S1	AUGUSTUS	stop_codon	22540759	22540761	.	+	0	transcript_id "Ledus.S1G264200.t1"; gene_id "Ledus.S1G264200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg300.t1 is derived from g7161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1481037	1482439	.	+	.	Ledus.S2G018200
Ledus.S2	AUGUSTUS	transcript	1481037	1482439	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	start_codon	1481037	1481039	.	+	0	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	CDS	1481037	1481103	0.98	+	0	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	exon	1481037	1481103	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	intron	1481104	1481191	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	CDS	1481192	1481416	1	+	2	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	exon	1481192	1481416	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	intron	1481417	1481511	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	CDS	1481512	1481572	1	+	2	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	exon	1481512	1481572	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	intron	1481573	1481673	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	CDS	1481674	1481821	0.9	+	1	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	exon	1481674	1481821	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	intron	1481822	1481901	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	CDS	1481902	1481981	1	+	0	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	exon	1481902	1481981	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	intron	1481982	1482066	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	CDS	1482067	1482127	0.78	+	1	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	exon	1482067	1482127	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	intron	1482128	1482195	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	CDS	1482196	1482200	0.78	+	0	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	exon	1482196	1482200	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	intron	1482201	1482300	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	CDS	1482301	1482439	0.93	+	1	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	exon	1482301	1482439	.	+	.	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
Ledus.S2	AUGUSTUS	stop_codon	1482440	1482442	.	+	0	transcript_id "Ledus.S2G018200.t1"; gene_id "Ledus.S2G018200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8289.t1 is derived from g12960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10504653	10506050	.	+	.	Ledus.S5G106700
Ledus.S5	AUGUSTUS	transcript	10504653	10506050	.	+	.	transcript_id "Ledus.S5G106700.t1"; gene_id "Ledus.S5G106700"
Ledus.S5	AUGUSTUS	start_codon	10504653	10504655	.	+	0	transcript_id "Ledus.S5G106700.t1"; gene_id "Ledus.S5G106700"
Ledus.S5	AUGUSTUS	CDS	10504653	10504834	0.97	+	0	transcript_id "Ledus.S5G106700.t1"; gene_id "Ledus.S5G106700"
Ledus.S5	AUGUSTUS	exon	10504653	10504834	.	+	.	transcript_id "Ledus.S5G106700.t1"; gene_id "Ledus.S5G106700"
Ledus.S5	AUGUSTUS	intron	10504835	10504903	.	+	.	transcript_id "Ledus.S5G106700.t1"; gene_id "Ledus.S5G106700"
Ledus.S5	AUGUSTUS	CDS	10504904	10506050	1	+	1	transcript_id "Ledus.S5G106700.t1"; gene_id "Ledus.S5G106700"
Ledus.S5	AUGUSTUS	exon	10504904	10506050	.	+	.	transcript_id "Ledus.S5G106700.t1"; gene_id "Ledus.S5G106700"
Ledus.S5	AUGUSTUS	stop_codon	10506051	10506053	.	+	0	transcript_id "Ledus.S5G106700.t1"; gene_id "Ledus.S5G106700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3912.t1 is derived from g1348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13535832	13537697	.	+	.	Ledus.S1G133300
Ledus.S1	AUGUSTUS	transcript	13535832	13537697	.	+	.	transcript_id "Ledus.S1G133300.t1"; gene_id "Ledus.S1G133300"
Ledus.S1	AUGUSTUS	start_codon	13535832	13535834	.	+	0	transcript_id "Ledus.S1G133300.t1"; gene_id "Ledus.S1G133300"
Ledus.S1	AUGUSTUS	CDS	13535832	13536647	0.91	+	0	transcript_id "Ledus.S1G133300.t1"; gene_id "Ledus.S1G133300"
Ledus.S1	AUGUSTUS	exon	13535832	13536647	.	+	.	transcript_id "Ledus.S1G133300.t1"; gene_id "Ledus.S1G133300"
Ledus.S1	AUGUSTUS	intron	13536648	13536746	.	+	.	transcript_id "Ledus.S1G133300.t1"; gene_id "Ledus.S1G133300"
Ledus.S1	AUGUSTUS	CDS	13536747	13537697	0.91	+	0	transcript_id "Ledus.S1G133300.t1"; gene_id "Ledus.S1G133300"
Ledus.S1	AUGUSTUS	exon	13536747	13537697	.	+	.	transcript_id "Ledus.S1G133300.t1"; gene_id "Ledus.S1G133300"
Ledus.S1	AUGUSTUS	stop_codon	13537698	13537700	.	+	0	transcript_id "Ledus.S1G133300.t1"; gene_id "Ledus.S1G133300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2560.t1 is derived from g9423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18969028	18971115	.	+	.	Ledus.S2G244200
Ledus.S2	AUGUSTUS	transcript	18969028	18971115	.	+	.	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	start_codon	18969028	18969030	.	+	0	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	CDS	18969028	18969791	0.75	+	0	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	exon	18969028	18969791	.	+	.	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	intron	18969792	18969900	.	+	.	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	CDS	18969901	18970134	1	+	1	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	exon	18969901	18970134	.	+	.	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	intron	18970135	18970278	.	+	.	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	CDS	18970279	18970666	1	+	1	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	exon	18970279	18970666	.	+	.	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	intron	18970667	18970812	.	+	.	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	CDS	18970813	18970965	1	+	0	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	exon	18970813	18970965	.	+	.	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	intron	18970966	18971055	.	+	.	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	CDS	18971056	18971115	0.98	+	0	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	exon	18971056	18971115	.	+	.	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
Ledus.S2	AUGUSTUS	stop_codon	18971116	18971118	.	+	0	transcript_id "Ledus.S2G244200.t1"; gene_id "Ledus.S2G244200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2515.t1 is derived from g9378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18539176	18551552	.	-	.	Ledus.S2G239700
Ledus.S2	AUGUSTUS	transcript	18539176	18551552	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	stop_codon	18539173	18539175	.	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18539176	18539256	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18539176	18539256	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18539257	18539356	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18539357	18539465	0.97	-	1	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18539357	18539465	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18539466	18539574	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18539575	18539789	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18539575	18539789	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18539790	18539905	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18539906	18540052	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18539906	18540052	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18540053	18540147	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18540148	18540306	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18540148	18540306	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18540307	18540404	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18540405	18540464	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18540405	18540464	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18540465	18540549	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18540550	18540617	1	-	2	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18540550	18540617	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18540618	18540765	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18540766	18540883	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18540766	18540883	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18540884	18541143	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18541144	18541221	0.36	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18541144	18541221	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18541222	18541510	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18541511	18541624	0.75	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18541511	18541624	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18541625	18541720	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18541721	18541885	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18541721	18541885	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18541886	18541975	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18541976	18542041	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18541976	18542041	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18542042	18542129	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18542130	18542271	1	-	1	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18542130	18542271	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18542272	18542417	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18542418	18542506	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18542418	18542506	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18542507	18542588	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18542589	18542783	0.99	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18542589	18542783	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18542784	18542925	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18542926	18543109	1	-	1	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18542926	18543109	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18543110	18543189	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18543190	18543296	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18543190	18543296	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18543297	18543497	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18543498	18543605	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18543498	18543605	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18543606	18543756	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18543757	18543909	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18543757	18543909	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18543910	18543990	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18543991	18544071	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18543991	18544071	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18544072	18544172	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18544173	18544400	0.97	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18544173	18544400	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18544401	18544564	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18544565	18544783	0.94	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18544565	18544783	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18544784	18545003	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18545004	18545204	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18545004	18545204	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18545205	18545451	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18545452	18547311	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18545452	18547311	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18547312	18547403	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18547404	18547466	0.95	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18547404	18547466	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18547467	18547551	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18547552	18547620	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18547552	18547620	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18547621	18547751	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18547752	18547856	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18547752	18547856	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18547857	18547921	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18547922	18548107	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18547922	18548107	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18548108	18548246	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18548247	18548312	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18548247	18548312	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18548313	18548456	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18548457	18548747	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18548457	18548747	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18548748	18549035	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18549036	18549194	0.99	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18549036	18549194	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18549195	18549287	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18549288	18549347	0.94	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18549288	18549347	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18549348	18549449	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18549450	18549518	0.94	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18549450	18549518	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18549519	18549674	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18549675	18549755	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18549675	18549755	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18549756	18549838	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18549839	18549941	1	-	1	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18549839	18549941	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18549942	18550090	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18550091	18550236	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18550091	18550236	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18550237	18550353	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18550354	18550425	0.93	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18550354	18550425	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18550426	18550527	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18550528	18550595	0.75	-	2	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18550528	18550595	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18550596	18550681	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18550682	18550763	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18550682	18550763	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18550764	18550850	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18550851	18550964	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18550851	18550964	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18550965	18551046	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18551047	18551165	1	-	2	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18551047	18551165	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18551166	18551248	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18551249	18551338	1	-	2	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18551249	18551338	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	intron	18551339	18551413	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	CDS	18551414	18551552	1	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	exon	18551414	18551552	.	-	.	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
Ledus.S2	AUGUSTUS	start_codon	18551550	18551552	.	-	0	transcript_id "Ledus.S2G239700.t1"; gene_id "Ledus.S2G239700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12346.t1 is derived from g5967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11337903	11340823	.	+	.	Ledus.S4G150200
Ledus.S4	AUGUSTUS	transcript	11337903	11340823	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	start_codon	11337903	11337905	.	+	0	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11337903	11338071	0.84	+	0	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11337903	11338071	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	intron	11338072	11338226	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11338227	11338436	0.98	+	2	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11338227	11338436	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	intron	11338437	11338513	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11338514	11338607	0.76	+	2	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11338514	11338607	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	intron	11338608	11338691	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11338692	11339189	0.76	+	1	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11338692	11339189	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	intron	11339190	11339278	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11339279	11339390	1	+	1	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11339279	11339390	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	intron	11339391	11339476	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11339477	11339656	1	+	0	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11339477	11339656	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	intron	11339657	11339744	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11339745	11339800	1	+	0	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11339745	11339800	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	intron	11339801	11339898	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11339899	11339989	1	+	1	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11339899	11339989	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	intron	11339990	11340083	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11340084	11340167	1	+	0	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11340084	11340167	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	intron	11340168	11340269	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11340270	11340365	1	+	0	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11340270	11340365	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	intron	11340366	11340494	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11340495	11340562	1	+	0	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11340495	11340562	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	intron	11340563	11340650	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11340651	11340715	1	+	1	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11340651	11340715	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	intron	11340716	11340806	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	CDS	11340807	11340823	1	+	2	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	exon	11340807	11340823	.	+	.	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
Ledus.S4	AUGUSTUS	stop_codon	11340824	11340826	.	+	0	transcript_id "Ledus.S4G150200.t1"; gene_id "Ledus.S4G150200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6575.t1 is derived from g4018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32460590	32460799	.	-	.	Ledus.S1G399600
Ledus.S1	AUGUSTUS	transcript	32460590	32460799	.	-	.	transcript_id "Ledus.S1G399600.t1"; gene_id "Ledus.S1G399600"
Ledus.S1	AUGUSTUS	stop_codon	32460587	32460589	.	-	0	transcript_id "Ledus.S1G399600.t1"; gene_id "Ledus.S1G399600"
Ledus.S1	AUGUSTUS	CDS	32460590	32460799	0.76	-	0	transcript_id "Ledus.S1G399600.t1"; gene_id "Ledus.S1G399600"
Ledus.S1	AUGUSTUS	exon	32460590	32460799	.	-	.	transcript_id "Ledus.S1G399600.t1"; gene_id "Ledus.S1G399600"
Ledus.S1	AUGUSTUS	start_codon	32460797	32460799	.	-	0	transcript_id "Ledus.S1G399600.t1"; gene_id "Ledus.S1G399600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg929.t1 is derived from g7790.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6193742	6199916	.	-	.	Ledus.S2G081100
Ledus.S2	AUGUSTUS	transcript	6193742	6199916	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	stop_codon	6193739	6193741	.	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6193742	6193852	0.97	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6193742	6193852	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6193853	6193976	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6193977	6194066	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6193977	6194066	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6194067	6194164	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6194165	6194230	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6194165	6194230	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6194231	6194306	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6194307	6194375	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6194307	6194375	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6194376	6194510	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6194511	6194619	0.66	-	1	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6194511	6194619	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6194620	6194732	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6194733	6194830	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6194733	6194830	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6194831	6194930	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6194931	6195012	1	-	1	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6194931	6195012	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6195013	6195146	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6195147	6195223	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6195147	6195223	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6195224	6195432	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6195433	6195603	0.99	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6195433	6195603	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6195604	6195681	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6195682	6195749	1	-	2	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6195682	6195749	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6195750	6195886	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6195887	6196028	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6195887	6196028	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6196029	6196113	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6196114	6196302	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6196114	6196302	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6196303	6196477	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6196478	6196552	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6196478	6196552	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6196553	6196643	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6196644	6196724	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6196644	6196724	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6196725	6196846	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6196847	6196975	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6196847	6196975	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6196976	6197103	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6197104	6197241	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6197104	6197241	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6197242	6197366	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6197367	6197468	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6197367	6197468	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6197469	6197627	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6197628	6197732	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6197628	6197732	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6197733	6197968	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6197969	6198086	1	-	1	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6197969	6198086	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6198087	6198255	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6198256	6198401	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6198256	6198401	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6198402	6198542	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6198543	6198645	1	-	1	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6198543	6198645	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6198646	6198806	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6198807	6198874	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6198807	6198874	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6198875	6199058	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6199059	6199139	1	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6199059	6199139	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6199140	6199220	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6199221	6199294	1	-	2	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6199221	6199294	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6199295	6199531	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6199532	6199721	0.84	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6199532	6199721	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	intron	6199722	6199814	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	CDS	6199815	6199916	0.52	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	exon	6199815	6199916	.	-	.	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
Ledus.S2	AUGUSTUS	start_codon	6199914	6199916	.	-	0	transcript_id "Ledus.S2G081100.t1"; gene_id "Ledus.S2G081100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4003.t1 is derived from g1439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14033688	14034306	.	-	.	Ledus.S1G142400
Ledus.S1	AUGUSTUS	transcript	14033688	14034306	.	-	.	transcript_id "Ledus.S1G142400.t1"; gene_id "Ledus.S1G142400"
Ledus.S1	AUGUSTUS	stop_codon	14033685	14033687	.	-	0	transcript_id "Ledus.S1G142400.t1"; gene_id "Ledus.S1G142400"
Ledus.S1	AUGUSTUS	CDS	14033688	14033906	0.83	-	0	transcript_id "Ledus.S1G142400.t1"; gene_id "Ledus.S1G142400"
Ledus.S1	AUGUSTUS	exon	14033688	14033906	.	-	.	transcript_id "Ledus.S1G142400.t1"; gene_id "Ledus.S1G142400"
Ledus.S1	AUGUSTUS	intron	14033907	14034108	.	-	.	transcript_id "Ledus.S1G142400.t1"; gene_id "Ledus.S1G142400"
Ledus.S1	AUGUSTUS	CDS	14034109	14034306	0.86	-	0	transcript_id "Ledus.S1G142400.t1"; gene_id "Ledus.S1G142400"
Ledus.S1	AUGUSTUS	exon	14034109	14034306	.	-	.	transcript_id "Ledus.S1G142400.t1"; gene_id "Ledus.S1G142400"
Ledus.S1	AUGUSTUS	start_codon	14034304	14034306	.	-	0	transcript_id "Ledus.S1G142400.t1"; gene_id "Ledus.S1G142400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8009.t1 is derived from g12680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8471565	8472823	.	+	.	Ledus.S5G078700
Ledus.S5	AUGUSTUS	transcript	8471565	8472823	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	start_codon	8471565	8471567	.	+	0	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	CDS	8471565	8471567	0.98	+	0	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	exon	8471565	8471567	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	intron	8471568	8471677	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	CDS	8471678	8471719	0.98	+	0	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	exon	8471678	8471719	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	intron	8471720	8471891	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	CDS	8471892	8471990	1	+	0	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	exon	8471892	8471990	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	intron	8471991	8472191	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	CDS	8472192	8472269	1	+	0	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	exon	8472192	8472269	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	intron	8472270	8472361	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	CDS	8472362	8472401	1	+	0	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	exon	8472362	8472401	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	intron	8472402	8472496	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	CDS	8472497	8472682	1	+	2	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	exon	8472497	8472682	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	intron	8472683	8472803	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	CDS	8472804	8472823	1	+	2	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	exon	8472804	8472823	.	+	.	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
Ledus.S5	AUGUSTUS	stop_codon	8472824	8472826	.	+	0	transcript_id "Ledus.S5G078700.t1"; gene_id "Ledus.S5G078700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6718.t1 is derived from g4161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33516675	33518563	.	+	.	Ledus.S1G413900
Ledus.S1	AUGUSTUS	transcript	33516675	33518563	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	start_codon	33516675	33516677	.	+	0	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	CDS	33516675	33516739	1	+	0	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	exon	33516675	33516739	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	intron	33516740	33516837	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	CDS	33516838	33516941	1	+	1	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	exon	33516838	33516941	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	intron	33516942	33517031	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	CDS	33517032	33517095	1	+	2	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	exon	33517032	33517095	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	intron	33517096	33517193	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	CDS	33517194	33517415	1	+	1	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	exon	33517194	33517415	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	intron	33517416	33517505	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	CDS	33517506	33517690	0.99	+	1	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	exon	33517506	33517690	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	intron	33517691	33517792	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	CDS	33517793	33517878	0.99	+	2	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	exon	33517793	33517878	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	intron	33517879	33517976	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	CDS	33517977	33518237	1	+	0	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	exon	33517977	33518237	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	intron	33518238	33518317	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	CDS	33518318	33518563	1	+	0	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	exon	33518318	33518563	.	+	.	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
Ledus.S1	AUGUSTUS	stop_codon	33518564	33518566	.	+	0	transcript_id "Ledus.S1G413900.t1"; gene_id "Ledus.S1G413900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6244.t1 is derived from g3687.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29875059	29875622	.	+	.	Ledus.S1G366500
Ledus.S1	AUGUSTUS	transcript	29875059	29875622	.	+	.	transcript_id "Ledus.S1G366500.t1"; gene_id "Ledus.S1G366500"
Ledus.S1	AUGUSTUS	start_codon	29875059	29875061	.	+	0	transcript_id "Ledus.S1G366500.t1"; gene_id "Ledus.S1G366500"
Ledus.S1	AUGUSTUS	CDS	29875059	29875254	0.99	+	0	transcript_id "Ledus.S1G366500.t1"; gene_id "Ledus.S1G366500"
Ledus.S1	AUGUSTUS	exon	29875059	29875254	.	+	.	transcript_id "Ledus.S1G366500.t1"; gene_id "Ledus.S1G366500"
Ledus.S1	AUGUSTUS	intron	29875255	29875350	.	+	.	transcript_id "Ledus.S1G366500.t1"; gene_id "Ledus.S1G366500"
Ledus.S1	AUGUSTUS	CDS	29875351	29875622	0.95	+	2	transcript_id "Ledus.S1G366500.t1"; gene_id "Ledus.S1G366500"
Ledus.S1	AUGUSTUS	exon	29875351	29875622	.	+	.	transcript_id "Ledus.S1G366500.t1"; gene_id "Ledus.S1G366500"
Ledus.S1	AUGUSTUS	stop_codon	29875623	29875625	.	+	0	transcript_id "Ledus.S1G366500.t1"; gene_id "Ledus.S1G366500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9407.t1 is derived from g10437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6589914	6590288	.	+	.	Ledus.S3G088400
Ledus.S3	AUGUSTUS	transcript	6589914	6590288	.	+	.	transcript_id "Ledus.S3G088400.t1"; gene_id "Ledus.S3G088400"
Ledus.S3	AUGUSTUS	start_codon	6589914	6589916	.	+	0	transcript_id "Ledus.S3G088400.t1"; gene_id "Ledus.S3G088400"
Ledus.S3	AUGUSTUS	CDS	6589914	6589943	0.97	+	0	transcript_id "Ledus.S3G088400.t1"; gene_id "Ledus.S3G088400"
Ledus.S3	AUGUSTUS	exon	6589914	6589943	.	+	.	transcript_id "Ledus.S3G088400.t1"; gene_id "Ledus.S3G088400"
Ledus.S3	AUGUSTUS	intron	6589944	6590072	.	+	.	transcript_id "Ledus.S3G088400.t1"; gene_id "Ledus.S3G088400"
Ledus.S3	AUGUSTUS	CDS	6590073	6590288	1	+	0	transcript_id "Ledus.S3G088400.t1"; gene_id "Ledus.S3G088400"
Ledus.S3	AUGUSTUS	exon	6590073	6590288	.	+	.	transcript_id "Ledus.S3G088400.t1"; gene_id "Ledus.S3G088400"
Ledus.S3	AUGUSTUS	stop_codon	6590289	6590291	.	+	0	transcript_id "Ledus.S3G088400.t1"; gene_id "Ledus.S3G088400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1296.t1 is derived from g8157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9154077	9154777	.	-	.	Ledus.S2G117800
Ledus.S2	AUGUSTUS	transcript	9154077	9154777	.	-	.	transcript_id "Ledus.S2G117800.t1"; gene_id "Ledus.S2G117800"
Ledus.S2	AUGUSTUS	stop_codon	9154074	9154076	.	-	0	transcript_id "Ledus.S2G117800.t1"; gene_id "Ledus.S2G117800"
Ledus.S2	AUGUSTUS	CDS	9154077	9154486	0.65	-	2	transcript_id "Ledus.S2G117800.t1"; gene_id "Ledus.S2G117800"
Ledus.S2	AUGUSTUS	exon	9154077	9154486	.	-	.	transcript_id "Ledus.S2G117800.t1"; gene_id "Ledus.S2G117800"
Ledus.S2	AUGUSTUS	intron	9154487	9154638	.	-	.	transcript_id "Ledus.S2G117800.t1"; gene_id "Ledus.S2G117800"
Ledus.S2	AUGUSTUS	CDS	9154639	9154777	1	-	0	transcript_id "Ledus.S2G117800.t1"; gene_id "Ledus.S2G117800"
Ledus.S2	AUGUSTUS	exon	9154639	9154777	.	-	.	transcript_id "Ledus.S2G117800.t1"; gene_id "Ledus.S2G117800"
Ledus.S2	AUGUSTUS	start_codon	9154775	9154777	.	-	0	transcript_id "Ledus.S2G117800.t1"; gene_id "Ledus.S2G117800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7754.t1 is derived from g12425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6023509	6023787	.	-	.	Ledus.S5G053200
Ledus.S5	AUGUSTUS	transcript	6023509	6023787	.	-	.	transcript_id "Ledus.S5G053200.t1"; gene_id "Ledus.S5G053200"
Ledus.S5	AUGUSTUS	stop_codon	6023506	6023508	.	-	0	transcript_id "Ledus.S5G053200.t1"; gene_id "Ledus.S5G053200"
Ledus.S5	AUGUSTUS	CDS	6023509	6023787	0.6	-	0	transcript_id "Ledus.S5G053200.t1"; gene_id "Ledus.S5G053200"
Ledus.S5	AUGUSTUS	exon	6023509	6023787	.	-	.	transcript_id "Ledus.S5G053200.t1"; gene_id "Ledus.S5G053200"
Ledus.S5	AUGUSTUS	start_codon	6023785	6023787	.	-	0	transcript_id "Ledus.S5G053200.t1"; gene_id "Ledus.S5G053200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7294.t1 is derived from g11965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	841587	843245	.	+	.	Ledus.S5G007200
Ledus.S5	AUGUSTUS	transcript	841587	843245	.	+	.	transcript_id "Ledus.S5G007200.t1"; gene_id "Ledus.S5G007200"
Ledus.S5	AUGUSTUS	start_codon	841587	841589	.	+	0	transcript_id "Ledus.S5G007200.t1"; gene_id "Ledus.S5G007200"
Ledus.S5	AUGUSTUS	CDS	841587	843245	0.96	+	0	transcript_id "Ledus.S5G007200.t1"; gene_id "Ledus.S5G007200"
Ledus.S5	AUGUSTUS	exon	841587	843245	.	+	.	transcript_id "Ledus.S5G007200.t1"; gene_id "Ledus.S5G007200"
Ledus.S5	AUGUSTUS	stop_codon	843246	843248	.	+	0	transcript_id "Ledus.S5G007200.t1"; gene_id "Ledus.S5G007200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5458.t1 is derived from g2897.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24390945	24395504	.	-	.	Ledus.S1G287900
Ledus.S1	AUGUSTUS	transcript	24390945	24395504	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	stop_codon	24390942	24390944	.	-	0	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24390945	24391093	0.58	-	2	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24390945	24391093	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24391094	24391180	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24391181	24391262	0.69	-	0	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24391181	24391262	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24391263	24391391	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24391392	24391480	0.96	-	2	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24391392	24391480	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24391481	24391585	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24391586	24391681	0.96	-	2	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24391586	24391681	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24391682	24391759	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24391760	24391833	0.8	-	1	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24391760	24391833	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24391834	24392058	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24392059	24392198	0.33	-	0	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24392059	24392198	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24392199	24392303	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24392304	24392971	0.98	-	2	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24392304	24392971	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24392972	24393078	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24393079	24393173	0.95	-	1	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24393079	24393173	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24393174	24393283	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24393284	24393337	0.99	-	1	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24393284	24393337	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24393338	24393413	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24393414	24393482	1	-	1	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24393414	24393482	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24393483	24393561	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24393562	24393648	1	-	1	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24393562	24393648	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24393649	24393721	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24393722	24393760	1	-	1	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24393722	24393760	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24393761	24393862	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24393863	24393943	1	-	1	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24393863	24393943	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24393944	24394100	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24394101	24394266	1	-	2	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24394101	24394266	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24394267	24394363	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24394364	24394544	1	-	0	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24394364	24394544	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24394545	24394650	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24394651	24394757	0.99	-	2	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24394651	24394757	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24394758	24394855	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24394856	24394930	1	-	2	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24394856	24394930	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24394931	24395005	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24395006	24395504	0.54	-	0	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24395006	24395504	.	-	.	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	start_codon	24395502	24395504	.	-	0	transcript_id "Ledus.S1G287900.t1"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	transcript	24390945	24395504	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	stop_codon	24390942	24390944	.	-	0	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24390945	24391093	0.51	-	2	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24390945	24391093	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24391094	24391180	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24391181	24391262	0.72	-	0	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24391181	24391262	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24391263	24391391	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24391392	24391480	0.98	-	2	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24391392	24391480	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24391481	24391585	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24391586	24391681	0.98	-	2	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24391586	24391681	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24391682	24391759	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24391760	24391833	0.77	-	1	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24391760	24391833	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24391834	24392058	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24392059	24392198	0.34	-	0	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24392059	24392198	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24392199	24392303	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24392304	24392971	0.98	-	2	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24392304	24392971	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24392972	24393078	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24393079	24393173	0.98	-	1	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24393079	24393173	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24393174	24393283	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24393284	24393337	1	-	1	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24393284	24393337	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24393338	24393413	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24393414	24393482	1	-	1	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24393414	24393482	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24393483	24393561	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24393562	24393648	1	-	1	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24393562	24393648	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24393649	24393721	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24393722	24393760	1	-	1	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24393722	24393760	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24393761	24393862	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24393863	24393997	0.83	-	1	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24393863	24393997	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24393998	24394100	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24394101	24394266	0.95	-	2	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24394101	24394266	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24394267	24394363	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24394364	24394544	1	-	0	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24394364	24394544	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24394545	24394650	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24394651	24394757	1	-	2	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24394651	24394757	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24394758	24394855	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24394856	24394930	0.99	-	2	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24394856	24394930	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	intron	24394931	24395005	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	CDS	24395006	24395504	0.55	-	0	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	exon	24395006	24395504	.	-	.	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
Ledus.S1	AUGUSTUS	start_codon	24395502	24395504	.	-	0	transcript_id "Ledus.S1G287900.t2"; gene_id "Ledus.S1G287900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5841.t1 is derived from g3283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27253320	27253914	.	-	.	Ledus.S1G326200
Ledus.S1	AUGUSTUS	transcript	27253320	27253914	.	-	.	transcript_id "Ledus.S1G326200.t1"; gene_id "Ledus.S1G326200"
Ledus.S1	AUGUSTUS	stop_codon	27253317	27253319	.	-	0	transcript_id "Ledus.S1G326200.t1"; gene_id "Ledus.S1G326200"
Ledus.S1	AUGUSTUS	CDS	27253320	27253361	1	-	0	transcript_id "Ledus.S1G326200.t1"; gene_id "Ledus.S1G326200"
Ledus.S1	AUGUSTUS	exon	27253320	27253361	.	-	.	transcript_id "Ledus.S1G326200.t1"; gene_id "Ledus.S1G326200"
Ledus.S1	AUGUSTUS	intron	27253362	27253440	.	-	.	transcript_id "Ledus.S1G326200.t1"; gene_id "Ledus.S1G326200"
Ledus.S1	AUGUSTUS	CDS	27253441	27253669	1	-	1	transcript_id "Ledus.S1G326200.t1"; gene_id "Ledus.S1G326200"
Ledus.S1	AUGUSTUS	exon	27253441	27253669	.	-	.	transcript_id "Ledus.S1G326200.t1"; gene_id "Ledus.S1G326200"
Ledus.S1	AUGUSTUS	intron	27253670	27253882	.	-	.	transcript_id "Ledus.S1G326200.t1"; gene_id "Ledus.S1G326200"
Ledus.S1	AUGUSTUS	CDS	27253883	27253914	0.67	-	0	transcript_id "Ledus.S1G326200.t1"; gene_id "Ledus.S1G326200"
Ledus.S1	AUGUSTUS	exon	27253883	27253914	.	-	.	transcript_id "Ledus.S1G326200.t1"; gene_id "Ledus.S1G326200"
Ledus.S1	AUGUSTUS	start_codon	27253912	27253914	.	-	0	transcript_id "Ledus.S1G326200.t1"; gene_id "Ledus.S1G326200"
# This transcript jg683.t2 is derived from g7545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg683.t3 is derived from g7545.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg684.t1 is derived from g7544.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4173866	4175234	.	-	.	Ledus.S2G056500
Ledus.S2	AUGUSTUS	transcript	4173866	4175234	.	-	.	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	stop_codon	4173863	4173865	.	-	0	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	CDS	4173866	4173931	0.48	-	0	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	exon	4173866	4173931	.	-	.	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	intron	4173932	4174023	.	-	.	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	CDS	4174024	4174329	0.34	-	0	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	exon	4174024	4174329	.	-	.	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	intron	4174330	4174407	.	-	.	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	CDS	4174408	4174549	0.39	-	1	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	exon	4174408	4174549	.	-	.	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	intron	4174550	4174652	.	-	.	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	CDS	4174653	4174790	0.75	-	1	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	exon	4174653	4174790	.	-	.	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	intron	4174791	4174963	.	-	.	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	CDS	4174964	4175019	0.42	-	0	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	exon	4174964	4175019	.	-	.	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	intron	4175020	4175111	.	-	.	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	CDS	4175112	4175234	0.42	-	0	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	exon	4175112	4175234	.	-	.	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
Ledus.S2	AUGUSTUS	start_codon	4175232	4175234	.	-	0	transcript_id "Ledus.S2G056500.t1"; gene_id "Ledus.S2G056500"
# This transcript jg2352.t2 is derived from g9215.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2353.t1 is derived from g9216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17405158	17406823	.	+	.	Ledus.S2G223500
Ledus.S2	AUGUSTUS	transcript	17405158	17406823	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	start_codon	17405158	17405160	.	+	0	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	CDS	17405158	17405412	0.86	+	0	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	exon	17405158	17405412	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	intron	17405413	17405509	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	CDS	17405510	17405683	1	+	0	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	exon	17405510	17405683	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	intron	17405684	17405756	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	CDS	17405757	17405849	1	+	0	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	exon	17405757	17405849	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	intron	17405850	17405932	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	CDS	17405933	17406001	1	+	0	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	exon	17405933	17406001	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	intron	17406002	17406100	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	CDS	17406101	17406307	0.99	+	0	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	exon	17406101	17406307	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	intron	17406308	17406405	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	CDS	17406406	17406534	0.59	+	0	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	exon	17406406	17406534	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	intron	17406535	17406676	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	CDS	17406677	17406823	0.63	+	0	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	exon	17406677	17406823	.	+	.	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
Ledus.S2	AUGUSTUS	stop_codon	17406824	17406826	.	+	0	transcript_id "Ledus.S2G223500.t1"; gene_id "Ledus.S2G223500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1402.t1 is derived from g8263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9894682	9900026	.	+	.	Ledus.S2G128400
Ledus.S2	AUGUSTUS	transcript	9894682	9900026	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	start_codon	9894682	9894684	.	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9894682	9894710	0.81	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9894682	9894710	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9894711	9894860	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9894861	9895078	0.35	+	1	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9894861	9895078	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9895079	9895167	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9895168	9895262	0.99	+	2	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9895168	9895262	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9895263	9895342	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9895343	9895399	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9895343	9895399	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9895400	9895497	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9895498	9895648	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9895498	9895648	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9895649	9895739	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9895740	9895810	1	+	2	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9895740	9895810	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9895811	9895891	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9895892	9896016	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9895892	9896016	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9896017	9896143	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9896144	9896304	0.99	+	1	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9896144	9896304	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9896305	9896410	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9896411	9896552	1	+	2	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9896411	9896552	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9896553	9896694	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9896695	9896758	1	+	1	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9896695	9896758	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9896759	9896936	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9896937	9897122	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9896937	9897122	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9897123	9897263	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9897264	9897320	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9897264	9897320	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9897321	9897445	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9897446	9897562	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9897446	9897562	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9897563	9897759	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9897760	9897819	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9897760	9897819	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9897820	9897937	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9897938	9898015	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9897938	9898015	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9898016	9898103	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9898104	9898211	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9898104	9898211	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9898212	9898299	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9898300	9898365	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9898300	9898365	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9898366	9898447	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9898448	9898525	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9898448	9898525	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9898526	9898661	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9898662	9898795	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9898662	9898795	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9898796	9898874	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9898875	9898968	1	+	1	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9898875	9898968	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9898969	9899036	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9899037	9899114	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9899037	9899114	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9899115	9899204	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9899205	9899267	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9899205	9899267	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9899268	9899349	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9899350	9899418	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9899350	9899418	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9899419	9899507	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9899508	9899603	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9899508	9899603	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	intron	9899604	9899675	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	CDS	9899676	9900026	1	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	exon	9899676	9900026	.	+	.	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
Ledus.S2	AUGUSTUS	stop_codon	9900027	9900029	.	+	0	transcript_id "Ledus.S2G128400.t1"; gene_id "Ledus.S2G128400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1842.t1 is derived from g8705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12919717	12923151	.	+	.	Ledus.S2G172400
Ledus.S2	AUGUSTUS	transcript	12919717	12923151	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	start_codon	12919717	12919719	.	+	0	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	CDS	12919717	12919753	0.34	+	0	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	exon	12919717	12919753	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	intron	12919754	12919977	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	CDS	12919978	12920047	0.66	+	2	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	exon	12919978	12920047	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	intron	12920048	12920133	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	CDS	12920134	12920187	0.69	+	1	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	exon	12920134	12920187	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	intron	12920188	12920333	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	CDS	12920334	12920505	1	+	1	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	exon	12920334	12920505	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	intron	12920506	12920670	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	CDS	12920671	12920744	0.91	+	0	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	exon	12920671	12920744	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	intron	12920745	12920831	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	CDS	12920832	12921132	1	+	1	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	exon	12920832	12921132	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	intron	12921133	12921276	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	CDS	12921277	12921465	0.99	+	0	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	exon	12921277	12921465	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	intron	12921466	12921578	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	CDS	12921579	12921761	1	+	0	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	exon	12921579	12921761	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	intron	12921762	12921852	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	CDS	12921853	12922050	0.72	+	0	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	exon	12921853	12922050	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	intron	12922051	12922363	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	CDS	12922364	12922503	0.67	+	0	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	exon	12922364	12922503	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	intron	12922504	12922587	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	CDS	12922588	12922630	0.98	+	1	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	exon	12922588	12922630	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	intron	12922631	12923145	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	CDS	12923146	12923151	1	+	0	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	exon	12923146	12923151	.	+	.	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
Ledus.S2	AUGUSTUS	stop_codon	12923152	12923154	.	+	0	transcript_id "Ledus.S2G172400.t1"; gene_id "Ledus.S2G172400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8588.t1 is derived from g9618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	478102	480159	.	-	.	Ledus.S3G006500
Ledus.S3	AUGUSTUS	transcript	478102	480159	.	-	.	transcript_id "Ledus.S3G006500.t1"; gene_id "Ledus.S3G006500"
Ledus.S3	AUGUSTUS	stop_codon	478099	478101	.	-	0	transcript_id "Ledus.S3G006500.t1"; gene_id "Ledus.S3G006500"
Ledus.S3	AUGUSTUS	CDS	478102	478125	1	-	0	transcript_id "Ledus.S3G006500.t1"; gene_id "Ledus.S3G006500"
Ledus.S3	AUGUSTUS	exon	478102	478125	.	-	.	transcript_id "Ledus.S3G006500.t1"; gene_id "Ledus.S3G006500"
Ledus.S3	AUGUSTUS	intron	478126	478249	.	-	.	transcript_id "Ledus.S3G006500.t1"; gene_id "Ledus.S3G006500"
Ledus.S3	AUGUSTUS	CDS	478250	478348	0.43	-	0	transcript_id "Ledus.S3G006500.t1"; gene_id "Ledus.S3G006500"
Ledus.S3	AUGUSTUS	exon	478250	478348	.	-	.	transcript_id "Ledus.S3G006500.t1"; gene_id "Ledus.S3G006500"
Ledus.S3	AUGUSTUS	intron	478349	478659	.	-	.	transcript_id "Ledus.S3G006500.t1"; gene_id "Ledus.S3G006500"
Ledus.S3	AUGUSTUS	CDS	478660	480159	0.55	-	0	transcript_id "Ledus.S3G006500.t1"; gene_id "Ledus.S3G006500"
Ledus.S3	AUGUSTUS	exon	478660	480159	.	-	.	transcript_id "Ledus.S3G006500.t1"; gene_id "Ledus.S3G006500"
Ledus.S3	AUGUSTUS	start_codon	480157	480159	.	-	0	transcript_id "Ledus.S3G006500.t1"; gene_id "Ledus.S3G006500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7633.t1 is derived from g12304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4609272	4610265	.	+	.	Ledus.S5G041100
Ledus.S5	AUGUSTUS	transcript	4609272	4610265	.	+	.	transcript_id "Ledus.S5G041100.t1"; gene_id "Ledus.S5G041100"
Ledus.S5	AUGUSTUS	start_codon	4609272	4609274	.	+	0	transcript_id "Ledus.S5G041100.t1"; gene_id "Ledus.S5G041100"
Ledus.S5	AUGUSTUS	CDS	4609272	4609666	0.79	+	0	transcript_id "Ledus.S5G041100.t1"; gene_id "Ledus.S5G041100"
Ledus.S5	AUGUSTUS	exon	4609272	4609666	.	+	.	transcript_id "Ledus.S5G041100.t1"; gene_id "Ledus.S5G041100"
Ledus.S5	AUGUSTUS	intron	4609667	4609799	.	+	.	transcript_id "Ledus.S5G041100.t1"; gene_id "Ledus.S5G041100"
Ledus.S5	AUGUSTUS	CDS	4609800	4610265	0.4	+	1	transcript_id "Ledus.S5G041100.t1"; gene_id "Ledus.S5G041100"
Ledus.S5	AUGUSTUS	exon	4609800	4610265	.	+	.	transcript_id "Ledus.S5G041100.t1"; gene_id "Ledus.S5G041100"
Ledus.S5	AUGUSTUS	stop_codon	4610266	4610268	.	+	0	transcript_id "Ledus.S5G041100.t1"; gene_id "Ledus.S5G041100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11801.t1 is derived from g5420.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6844001	6844966	.	+	.	Ledus.S4G095700
Ledus.S4	AUGUSTUS	transcript	6844001	6844966	.	+	.	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	start_codon	6844001	6844003	.	+	0	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	CDS	6844001	6844007	1	+	0	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	exon	6844001	6844007	.	+	.	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	intron	6844008	6844239	.	+	.	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	CDS	6844240	6844284	0.94	+	2	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	exon	6844240	6844284	.	+	.	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	intron	6844285	6844367	.	+	.	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	CDS	6844368	6844380	0.97	+	2	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	exon	6844368	6844380	.	+	.	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	intron	6844381	6844453	.	+	.	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	CDS	6844454	6844550	0.97	+	1	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	exon	6844454	6844550	.	+	.	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	intron	6844551	6844810	.	+	.	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	CDS	6844811	6844966	0.47	+	0	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	exon	6844811	6844966	.	+	.	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	stop_codon	6844967	6844969	.	+	0	transcript_id "Ledus.S4G095700.t1"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	transcript	6844001	6844726	.	+	.	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	start_codon	6844001	6844003	.	+	0	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	CDS	6844001	6844007	0.99	+	0	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	exon	6844001	6844007	.	+	.	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	intron	6844008	6844239	.	+	.	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	CDS	6844240	6844284	0.88	+	2	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	exon	6844240	6844284	.	+	.	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	intron	6844285	6844367	.	+	.	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	CDS	6844368	6844380	0.59	+	2	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	exon	6844368	6844380	.	+	.	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	intron	6844381	6844453	.	+	.	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	CDS	6844454	6844550	0.5	+	1	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	exon	6844454	6844550	.	+	.	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	intron	6844551	6844675	.	+	.	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	CDS	6844676	6844726	0.46	+	0	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	exon	6844676	6844726	.	+	.	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
Ledus.S4	AUGUSTUS	stop_codon	6844727	6844729	.	+	0	transcript_id "Ledus.S4G095700.t2"; gene_id "Ledus.S4G095700"
# This transcript jg2068.t2 is derived from g8931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2069.t1 is derived from g8932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14439868	14441323	.	+	.	Ledus.S2G195100
Ledus.S2	AUGUSTUS	transcript	14439868	14441323	.	+	.	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	start_codon	14439868	14439870	.	+	0	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	CDS	14439868	14440298	0.42	+	0	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	exon	14439868	14440298	.	+	.	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	intron	14440299	14440569	.	+	.	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	CDS	14440570	14440631	0.81	+	1	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	exon	14440570	14440631	.	+	.	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	intron	14440632	14440903	.	+	.	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	CDS	14440904	14440993	0.88	+	2	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	exon	14440904	14440993	.	+	.	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	intron	14440994	14441069	.	+	.	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	CDS	14441070	14441323	0.88	+	2	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	exon	14441070	14441323	.	+	.	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
Ledus.S2	AUGUSTUS	stop_codon	14441324	14441326	.	+	0	transcript_id "Ledus.S2G195100.t1"; gene_id "Ledus.S2G195100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10128.t1 is derived from g11158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12956073	12956933	.	+	.	Ledus.S3G160500
Ledus.S3	AUGUSTUS	transcript	12956073	12956933	.	+	.	transcript_id "Ledus.S3G160500.t1"; gene_id "Ledus.S3G160500"
Ledus.S3	AUGUSTUS	start_codon	12956073	12956075	.	+	0	transcript_id "Ledus.S3G160500.t1"; gene_id "Ledus.S3G160500"
Ledus.S3	AUGUSTUS	CDS	12956073	12956165	0.86	+	0	transcript_id "Ledus.S3G160500.t1"; gene_id "Ledus.S3G160500"
Ledus.S3	AUGUSTUS	exon	12956073	12956165	.	+	.	transcript_id "Ledus.S3G160500.t1"; gene_id "Ledus.S3G160500"
Ledus.S3	AUGUSTUS	intron	12956166	12956237	.	+	.	transcript_id "Ledus.S3G160500.t1"; gene_id "Ledus.S3G160500"
Ledus.S3	AUGUSTUS	CDS	12956238	12956933	1	+	0	transcript_id "Ledus.S3G160500.t1"; gene_id "Ledus.S3G160500"
Ledus.S3	AUGUSTUS	exon	12956238	12956933	.	+	.	transcript_id "Ledus.S3G160500.t1"; gene_id "Ledus.S3G160500"
Ledus.S3	AUGUSTUS	stop_codon	12956934	12956936	.	+	0	transcript_id "Ledus.S3G160500.t1"; gene_id "Ledus.S3G160500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4319.t1 is derived from g1755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16217532	16217721	.	-	.	Ledus.S1G174000
Ledus.S1	AUGUSTUS	transcript	16217532	16217721	.	-	.	transcript_id "Ledus.S1G174000.t1"; gene_id "Ledus.S1G174000"
Ledus.S1	AUGUSTUS	CDS	16217532	16217721	0.57	-	0	transcript_id "Ledus.S1G174000.t1"; gene_id "Ledus.S1G174000"
Ledus.S1	AUGUSTUS	exon	16217532	16217721	.	-	.	transcript_id "Ledus.S1G174000.t1"; gene_id "Ledus.S1G174000"
Ledus.S1	AUGUSTUS	start_codon	16217719	16217721	.	-	0	transcript_id "Ledus.S1G174000.t1"; gene_id "Ledus.S1G174000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7300.t1 is derived from g11971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	868862	871190	.	-	.	Ledus.S5G007800
Ledus.S5	AUGUSTUS	transcript	868862	871190	.	-	.	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	stop_codon	868859	868861	.	-	0	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	CDS	868862	869438	1	-	1	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	exon	868862	869438	.	-	.	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	intron	869439	869580	.	-	.	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	CDS	869581	869645	0.99	-	0	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	exon	869581	869645	.	-	.	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	intron	869646	869730	.	-	.	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	CDS	869731	870274	0.84	-	1	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	exon	869731	870274	.	-	.	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	intron	870275	870603	.	-	.	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	CDS	870604	871190	0.76	-	0	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	exon	870604	871190	.	-	.	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
Ledus.S5	AUGUSTUS	start_codon	871188	871190	.	-	0	transcript_id "Ledus.S5G007800.t1"; gene_id "Ledus.S5G007800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1610.t1 is derived from g8471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11375154	11375564	.	+	.	Ledus.S2G149200
Ledus.S2	AUGUSTUS	transcript	11375154	11375564	.	+	.	transcript_id "Ledus.S2G149200.t1"; gene_id "Ledus.S2G149200"
Ledus.S2	AUGUSTUS	start_codon	11375154	11375156	.	+	0	transcript_id "Ledus.S2G149200.t1"; gene_id "Ledus.S2G149200"
Ledus.S2	AUGUSTUS	CDS	11375154	11375564	0.59	+	0	transcript_id "Ledus.S2G149200.t1"; gene_id "Ledus.S2G149200"
Ledus.S2	AUGUSTUS	exon	11375154	11375564	.	+	.	transcript_id "Ledus.S2G149200.t1"; gene_id "Ledus.S2G149200"
Ledus.S2	AUGUSTUS	stop_codon	11375565	11375567	.	+	0	transcript_id "Ledus.S2G149200.t1"; gene_id "Ledus.S2G149200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12763.t1 is derived from g6385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14351476	14353548	.	-	.	Ledus.S4G191900
Ledus.S4	AUGUSTUS	transcript	14351476	14353548	.	-	.	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	stop_codon	14351473	14351475	.	-	0	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	CDS	14351476	14351682	0.65	-	0	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	exon	14351476	14351682	.	-	.	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	intron	14351683	14351772	.	-	.	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	CDS	14351773	14351829	1	-	0	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	exon	14351773	14351829	.	-	.	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	intron	14351830	14351924	.	-	.	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	CDS	14351925	14351987	0.91	-	0	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	exon	14351925	14351987	.	-	.	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	intron	14351988	14352095	.	-	.	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	CDS	14352096	14352206	0.83	-	0	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	exon	14352096	14352206	.	-	.	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	intron	14352207	14352326	.	-	.	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	CDS	14352327	14353203	0.98	-	1	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	exon	14352327	14353203	.	-	.	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	intron	14353204	14353522	.	-	.	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	CDS	14353523	14353548	0.99	-	0	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	exon	14353523	14353548	.	-	.	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
Ledus.S4	AUGUSTUS	start_codon	14353546	14353548	.	-	0	transcript_id "Ledus.S4G191900.t1"; gene_id "Ledus.S4G191900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1927.t1 is derived from g8790.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13471977	13474010	.	-	.	Ledus.S2G180900
Ledus.S2	AUGUSTUS	transcript	13471977	13474010	.	-	.	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	stop_codon	13471974	13471976	.	-	0	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	CDS	13471977	13472186	0.98	-	0	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	exon	13471977	13472186	.	-	.	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	intron	13472187	13472295	.	-	.	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	CDS	13472296	13472600	1	-	2	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	exon	13472296	13472600	.	-	.	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	intron	13472601	13472709	.	-	.	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	CDS	13472710	13472868	1	-	2	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	exon	13472710	13472868	.	-	.	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	intron	13472869	13473006	.	-	.	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	CDS	13473007	13473307	1	-	0	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	exon	13473007	13473307	.	-	.	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	intron	13473308	13473809	.	-	.	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	CDS	13473810	13474010	0.76	-	0	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	exon	13473810	13474010	.	-	.	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
Ledus.S2	AUGUSTUS	start_codon	13474008	13474010	.	-	0	transcript_id "Ledus.S2G180900.t1"; gene_id "Ledus.S2G180900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12723.t1 is derived from g6345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14079736	14081752	.	+	.	Ledus.S4G187900
Ledus.S4	AUGUSTUS	transcript	14079736	14081752	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	start_codon	14079736	14079738	.	+	0	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	CDS	14079736	14079746	0.44	+	0	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	exon	14079736	14079746	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	intron	14079747	14079884	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	CDS	14079885	14079954	0.47	+	1	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	exon	14079885	14079954	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	intron	14079955	14080040	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	CDS	14080041	14080127	1	+	0	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	exon	14080041	14080127	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	intron	14080128	14080227	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	CDS	14080228	14080285	0.98	+	0	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	exon	14080228	14080285	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	intron	14080286	14080398	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	CDS	14080399	14080499	0.98	+	2	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	exon	14080399	14080499	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	intron	14080500	14080601	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	CDS	14080602	14080697	1	+	0	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	exon	14080602	14080697	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	intron	14080698	14080810	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	CDS	14080811	14080904	1	+	0	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	exon	14080811	14080904	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	intron	14080905	14081043	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	CDS	14081044	14081281	1	+	2	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	exon	14081044	14081281	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	intron	14081282	14081415	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	CDS	14081416	14081752	1	+	1	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	exon	14081416	14081752	.	+	.	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
Ledus.S4	AUGUSTUS	stop_codon	14081753	14081755	.	+	0	transcript_id "Ledus.S4G187900.t1"; gene_id "Ledus.S4G187900"
# This transcript jg4877.t2 is derived from g2315.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4878.t1 is derived from g2316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20500818	20501444	.	-	.	Ledus.S1G229900
Ledus.S1	AUGUSTUS	transcript	20500818	20501444	.	-	.	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	stop_codon	20500815	20500817	.	-	0	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	CDS	20500818	20500902	1	-	1	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	exon	20500818	20500902	.	-	.	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	intron	20500903	20500988	.	-	.	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	CDS	20500989	20501089	1	-	0	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	exon	20500989	20501089	.	-	.	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	intron	20501090	20501170	.	-	.	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	CDS	20501171	20501223	1	-	2	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	exon	20501171	20501223	.	-	.	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	intron	20501224	20501308	.	-	.	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	CDS	20501309	20501444	0.8	-	0	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	exon	20501309	20501444	.	-	.	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
Ledus.S1	AUGUSTUS	start_codon	20501442	20501444	.	-	0	transcript_id "Ledus.S1G229900.t1"; gene_id "Ledus.S1G229900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1706.t1 is derived from g8567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12006878	12008744	.	-	.	Ledus.S2G158800
Ledus.S2	AUGUSTUS	transcript	12006878	12008744	.	-	.	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	stop_codon	12006875	12006877	.	-	0	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	CDS	12006878	12007157	1	-	1	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	exon	12006878	12007157	.	-	.	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	intron	12007158	12007246	.	-	.	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	CDS	12007247	12007614	0.99	-	0	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	exon	12007247	12007614	.	-	.	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	intron	12007615	12007702	.	-	.	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	CDS	12007703	12007999	0.96	-	0	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	exon	12007703	12007999	.	-	.	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	intron	12008000	12008075	.	-	.	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	CDS	12008076	12008295	0.71	-	1	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	exon	12008076	12008295	.	-	.	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	intron	12008296	12008355	.	-	.	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	CDS	12008356	12008744	0.26	-	0	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	exon	12008356	12008744	.	-	.	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
Ledus.S2	AUGUSTUS	start_codon	12008742	12008744	.	-	0	transcript_id "Ledus.S2G158800.t1"; gene_id "Ledus.S2G158800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3146.t1 is derived from g581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6279895	6280308	.	-	.	Ledus.S1G056700
Ledus.S1	AUGUSTUS	transcript	6279895	6280308	.	-	.	transcript_id "Ledus.S1G056700.t1"; gene_id "Ledus.S1G056700"
Ledus.S1	AUGUSTUS	stop_codon	6279892	6279894	.	-	0	transcript_id "Ledus.S1G056700.t1"; gene_id "Ledus.S1G056700"
Ledus.S1	AUGUSTUS	CDS	6279895	6279931	0.65	-	1	transcript_id "Ledus.S1G056700.t1"; gene_id "Ledus.S1G056700"
Ledus.S1	AUGUSTUS	exon	6279895	6279931	.	-	.	transcript_id "Ledus.S1G056700.t1"; gene_id "Ledus.S1G056700"
Ledus.S1	AUGUSTUS	intron	6279932	6280018	.	-	.	transcript_id "Ledus.S1G056700.t1"; gene_id "Ledus.S1G056700"
Ledus.S1	AUGUSTUS	CDS	6280019	6280308	0.58	-	0	transcript_id "Ledus.S1G056700.t1"; gene_id "Ledus.S1G056700"
Ledus.S1	AUGUSTUS	exon	6280019	6280308	.	-	.	transcript_id "Ledus.S1G056700.t1"; gene_id "Ledus.S1G056700"
Ledus.S1	AUGUSTUS	start_codon	6280306	6280308	.	-	0	transcript_id "Ledus.S1G056700.t1"; gene_id "Ledus.S1G056700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1616.t1 is derived from g8477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11437655	11437897	.	+	.	Ledus.S2G149800
Ledus.S2	AUGUSTUS	transcript	11437655	11437897	.	+	.	transcript_id "Ledus.S2G149800.t1"; gene_id "Ledus.S2G149800"
Ledus.S2	AUGUSTUS	start_codon	11437655	11437657	.	+	0	transcript_id "Ledus.S2G149800.t1"; gene_id "Ledus.S2G149800"
Ledus.S2	AUGUSTUS	CDS	11437655	11437897	0.55	+	0	transcript_id "Ledus.S2G149800.t1"; gene_id "Ledus.S2G149800"
Ledus.S2	AUGUSTUS	exon	11437655	11437897	.	+	.	transcript_id "Ledus.S2G149800.t1"; gene_id "Ledus.S2G149800"
Ledus.S2	AUGUSTUS	stop_codon	11437898	11437900	.	+	0	transcript_id "Ledus.S2G149800.t1"; gene_id "Ledus.S2G149800"
# This transcript jg6689.t2 is derived from g4132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6690.t1 is derived from g4133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33281682	33286001	.	+	.	Ledus.S1G411100
Ledus.S1	AUGUSTUS	transcript	33281682	33286001	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	start_codon	33281682	33281684	.	+	0	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33281682	33281866	0.67	+	0	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33281682	33281866	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	intron	33281867	33282010	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33282011	33282235	1	+	1	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33282011	33282235	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	intron	33282236	33282419	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33282420	33282483	1	+	1	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33282420	33282483	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	intron	33282484	33282641	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33282642	33282981	1	+	0	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33282642	33282981	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	intron	33282982	33283109	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33283110	33283405	1	+	2	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33283110	33283405	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	intron	33283406	33283588	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33283589	33283669	1	+	0	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33283589	33283669	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	intron	33283670	33283753	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33283754	33283852	0.96	+	0	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33283754	33283852	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	intron	33283853	33283963	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33283964	33284056	0.5	+	0	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33283964	33284056	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	intron	33284057	33284293	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33284294	33284482	0.97	+	0	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33284294	33284482	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	intron	33284483	33284578	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33284579	33284654	1	+	0	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33284579	33284654	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	intron	33284655	33284746	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33284747	33285041	1	+	2	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33284747	33285041	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	intron	33285042	33285148	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33285149	33285315	1	+	1	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33285149	33285315	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	intron	33285316	33285438	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	CDS	33285439	33286001	1	+	2	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	exon	33285439	33286001	.	+	.	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
Ledus.S1	AUGUSTUS	stop_codon	33286002	33286004	.	+	0	transcript_id "Ledus.S1G411100.t1"; gene_id "Ledus.S1G411100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5090.t1 is derived from g2529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21500083	21503500	.	-	.	Ledus.S1G251100
Ledus.S1	AUGUSTUS	transcript	21500083	21503500	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	stop_codon	21500080	21500082	.	-	0	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21500083	21500252	0.94	-	2	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21500083	21500252	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21500253	21500366	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21500367	21500444	0.94	-	2	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21500367	21500444	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21500445	21500561	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21500562	21500626	1	-	1	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21500562	21500626	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21500627	21500822	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21500823	21500900	1	-	1	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21500823	21500900	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21500901	21501049	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21501050	21501116	1	-	2	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21501050	21501116	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21501117	21501198	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21501199	21501259	1	-	0	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21501199	21501259	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21501260	21501379	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21501380	21501463	0.98	-	0	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21501380	21501463	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21501464	21501566	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21501567	21501668	1	-	0	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21501567	21501668	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21501669	21501761	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21501762	21501847	1	-	2	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21501762	21501847	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21501848	21501957	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21501958	21502021	1	-	0	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21501958	21502021	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21502022	21502142	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21502143	21502235	1	-	0	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21502143	21502235	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21502236	21502337	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21502338	21502422	0.98	-	1	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21502338	21502422	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21502423	21502604	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21502605	21502694	1	-	1	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21502605	21502694	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21502695	21502809	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21502810	21502888	1	-	2	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21502810	21502888	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21502889	21502976	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21502977	21503097	1	-	0	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21502977	21503097	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21503098	21503210	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21503211	21503235	0.96	-	1	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21503211	21503235	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	intron	21503236	21503366	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	CDS	21503367	21503500	1	-	0	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	exon	21503367	21503500	.	-	.	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
Ledus.S1	AUGUSTUS	start_codon	21503498	21503500	.	-	0	transcript_id "Ledus.S1G251100.t1"; gene_id "Ledus.S1G251100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5748.t1 is derived from g3188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26464003	26467014	.	+	.	Ledus.S1G316900
Ledus.S1	AUGUSTUS	transcript	26464003	26467014	.	+	.	transcript_id "Ledus.S1G316900.t1"; gene_id "Ledus.S1G316900"
Ledus.S1	AUGUSTUS	start_codon	26464003	26464005	.	+	0	transcript_id "Ledus.S1G316900.t1"; gene_id "Ledus.S1G316900"
Ledus.S1	AUGUSTUS	CDS	26464003	26467014	0.89	+	0	transcript_id "Ledus.S1G316900.t1"; gene_id "Ledus.S1G316900"
Ledus.S1	AUGUSTUS	exon	26464003	26467014	.	+	.	transcript_id "Ledus.S1G316900.t1"; gene_id "Ledus.S1G316900"
Ledus.S1	AUGUSTUS	stop_codon	26467015	26467017	.	+	0	transcript_id "Ledus.S1G316900.t1"; gene_id "Ledus.S1G316900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7928.t1 is derived from g12599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7889588	7889890	.	-	.	Ledus.S5G070600
Ledus.S5	AUGUSTUS	transcript	7889588	7889890	.	-	.	transcript_id "Ledus.S5G070600.t1"; gene_id "Ledus.S5G070600"
Ledus.S5	AUGUSTUS	stop_codon	7889585	7889587	.	-	0	transcript_id "Ledus.S5G070600.t1"; gene_id "Ledus.S5G070600"
Ledus.S5	AUGUSTUS	CDS	7889588	7889890	0.91	-	0	transcript_id "Ledus.S5G070600.t1"; gene_id "Ledus.S5G070600"
Ledus.S5	AUGUSTUS	exon	7889588	7889890	.	-	.	transcript_id "Ledus.S5G070600.t1"; gene_id "Ledus.S5G070600"
Ledus.S5	AUGUSTUS	start_codon	7889888	7889890	.	-	0	transcript_id "Ledus.S5G070600.t1"; gene_id "Ledus.S5G070600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5452.t1 is derived from g2891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24372456	24373551	.	-	.	Ledus.S1G287300
Ledus.S1	AUGUSTUS	transcript	24372456	24373551	.	-	.	transcript_id "Ledus.S1G287300.t1"; gene_id "Ledus.S1G287300"
Ledus.S1	AUGUSTUS	stop_codon	24372453	24372455	.	-	0	transcript_id "Ledus.S1G287300.t1"; gene_id "Ledus.S1G287300"
Ledus.S1	AUGUSTUS	CDS	24372456	24373015	0.7	-	2	transcript_id "Ledus.S1G287300.t1"; gene_id "Ledus.S1G287300"
Ledus.S1	AUGUSTUS	exon	24372456	24373015	.	-	.	transcript_id "Ledus.S1G287300.t1"; gene_id "Ledus.S1G287300"
Ledus.S1	AUGUSTUS	intron	24373016	24373103	.	-	.	transcript_id "Ledus.S1G287300.t1"; gene_id "Ledus.S1G287300"
Ledus.S1	AUGUSTUS	CDS	24373104	24373551	0.77	-	0	transcript_id "Ledus.S1G287300.t1"; gene_id "Ledus.S1G287300"
Ledus.S1	AUGUSTUS	exon	24373104	24373551	.	-	.	transcript_id "Ledus.S1G287300.t1"; gene_id "Ledus.S1G287300"
Ledus.S1	AUGUSTUS	start_codon	24373549	24373551	.	-	0	transcript_id "Ledus.S1G287300.t1"; gene_id "Ledus.S1G287300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6821.t1 is derived from g4265.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34485514	34485747	.	+	.	Ledus.S1G424200
Ledus.S1	AUGUSTUS	transcript	34485514	34485747	.	+	.	transcript_id "Ledus.S1G424200.t1"; gene_id "Ledus.S1G424200"
Ledus.S1	AUGUSTUS	start_codon	34485514	34485516	.	+	0	transcript_id "Ledus.S1G424200.t1"; gene_id "Ledus.S1G424200"
Ledus.S1	AUGUSTUS	CDS	34485514	34485747	0.97	+	0	transcript_id "Ledus.S1G424200.t1"; gene_id "Ledus.S1G424200"
Ledus.S1	AUGUSTUS	exon	34485514	34485747	.	+	.	transcript_id "Ledus.S1G424200.t1"; gene_id "Ledus.S1G424200"
Ledus.S1	AUGUSTUS	stop_codon	34485748	34485750	.	+	0	transcript_id "Ledus.S1G424200.t1"; gene_id "Ledus.S1G424200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1635.t1 is derived from g8496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11496703	11501261	.	-	.	Ledus.S2G151700
Ledus.S2	AUGUSTUS	transcript	11496703	11501261	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	stop_codon	11496700	11496702	.	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11496703	11496795	0.87	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11496703	11496795	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11496796	11497206	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11497207	11497283	0.41	-	2	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11497207	11497283	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11497284	11497543	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11497544	11497563	0.34	-	1	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11497544	11497563	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11497564	11497863	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11497864	11498072	0.4	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11497864	11498072	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11498073	11498157	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11498158	11498203	1	-	1	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11498158	11498203	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11498204	11498365	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11498366	11498448	1	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11498366	11498448	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11498449	11498623	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11498624	11498703	0.97	-	2	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11498624	11498703	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11498704	11498819	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11498820	11498928	1	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11498820	11498928	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11498929	11499022	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11499023	11499088	0.85	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11499023	11499088	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11499089	11499193	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11499194	11499244	0.81	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11499194	11499244	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11499245	11499323	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11499324	11499449	1	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11499324	11499449	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11499450	11499571	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11499572	11499695	1	-	1	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11499572	11499695	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11499696	11499804	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11499805	11499860	1	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11499805	11499860	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11499861	11500052	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11500053	11500117	1	-	2	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11500053	11500117	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11500118	11500307	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11500308	11500377	1	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11500308	11500377	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11500378	11500545	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11500546	11500646	1	-	2	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11500546	11500646	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11500647	11500727	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11500728	11500845	1	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11500728	11500845	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	intron	11500846	11500979	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	CDS	11500980	11501261	0.51	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	exon	11500980	11501261	.	-	.	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
Ledus.S2	AUGUSTUS	start_codon	11501259	11501261	.	-	0	transcript_id "Ledus.S2G151700.t1"; gene_id "Ledus.S2G151700"
# This transcript jg12325.t2 is derived from g5946.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12326.t1 is derived from g5947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11214762	11215597	.	-	.	Ledus.S4G148200
Ledus.S4	AUGUSTUS	transcript	11214762	11215597	.	-	.	transcript_id "Ledus.S4G148200.t1"; gene_id "Ledus.S4G148200"
Ledus.S4	AUGUSTUS	stop_codon	11214759	11214761	.	-	0	transcript_id "Ledus.S4G148200.t1"; gene_id "Ledus.S4G148200"
Ledus.S4	AUGUSTUS	CDS	11214762	11215027	1	-	2	transcript_id "Ledus.S4G148200.t1"; gene_id "Ledus.S4G148200"
Ledus.S4	AUGUSTUS	exon	11214762	11215027	.	-	.	transcript_id "Ledus.S4G148200.t1"; gene_id "Ledus.S4G148200"
Ledus.S4	AUGUSTUS	intron	11215028	11215113	.	-	.	transcript_id "Ledus.S4G148200.t1"; gene_id "Ledus.S4G148200"
Ledus.S4	AUGUSTUS	CDS	11215114	11215193	1	-	1	transcript_id "Ledus.S4G148200.t1"; gene_id "Ledus.S4G148200"
Ledus.S4	AUGUSTUS	exon	11215114	11215193	.	-	.	transcript_id "Ledus.S4G148200.t1"; gene_id "Ledus.S4G148200"
Ledus.S4	AUGUSTUS	intron	11215194	11215442	.	-	.	transcript_id "Ledus.S4G148200.t1"; gene_id "Ledus.S4G148200"
Ledus.S4	AUGUSTUS	CDS	11215443	11215597	0.98	-	0	transcript_id "Ledus.S4G148200.t1"; gene_id "Ledus.S4G148200"
Ledus.S4	AUGUSTUS	exon	11215443	11215597	.	-	.	transcript_id "Ledus.S4G148200.t1"; gene_id "Ledus.S4G148200"
Ledus.S4	AUGUSTUS	start_codon	11215595	11215597	.	-	0	transcript_id "Ledus.S4G148200.t1"; gene_id "Ledus.S4G148200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11021.t1 is derived from g4639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1211368	1212846	.	-	.	Ledus.S4G017700
Ledus.S4	AUGUSTUS	transcript	1211368	1212846	.	-	.	transcript_id "Ledus.S4G017700.t1"; gene_id "Ledus.S4G017700"
Ledus.S4	AUGUSTUS	stop_codon	1211365	1211367	.	-	0	transcript_id "Ledus.S4G017700.t1"; gene_id "Ledus.S4G017700"
Ledus.S4	AUGUSTUS	CDS	1211368	1212846	0.9	-	0	transcript_id "Ledus.S4G017700.t1"; gene_id "Ledus.S4G017700"
Ledus.S4	AUGUSTUS	exon	1211368	1212846	.	-	.	transcript_id "Ledus.S4G017700.t1"; gene_id "Ledus.S4G017700"
Ledus.S4	AUGUSTUS	start_codon	1212844	1212846	.	-	0	transcript_id "Ledus.S4G017700.t1"; gene_id "Ledus.S4G017700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12418.t1 is derived from g6039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11932373	11938837	.	-	.	Ledus.S4G157400
Ledus.S4	AUGUSTUS	transcript	11932373	11938837	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	stop_codon	11932370	11932372	.	-	0	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11932373	11932510	0.67	-	0	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11932373	11932510	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11932511	11932603	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11932604	11932822	1	-	0	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11932604	11932822	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11932823	11932942	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11932943	11933104	1	-	0	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11932943	11933104	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11933105	11933280	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11933281	11933559	1	-	0	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11933281	11933559	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11933560	11933648	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11933649	11933846	1	-	0	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11933649	11933846	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11933847	11933989	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11933990	11934131	1	-	1	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11933990	11934131	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11934132	11934214	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11934215	11934326	1	-	2	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11934215	11934326	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11934327	11934509	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11934510	11934693	1	-	0	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11934510	11934693	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11934694	11934775	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11934776	11934940	1	-	0	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11934776	11934940	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11934941	11935077	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11935078	11936708	0.95	-	2	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11935078	11936708	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11936709	11936829	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11936830	11937158	1	-	1	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11936830	11937158	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11937159	11937258	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11937259	11938383	0.52	-	1	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11937259	11938383	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11938384	11938491	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11938492	11938514	0.74	-	0	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11938492	11938514	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	intron	11938515	11938822	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	CDS	11938823	11938837	0.64	-	0	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	exon	11938823	11938837	.	-	.	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
Ledus.S4	AUGUSTUS	start_codon	11938835	11938837	.	-	0	transcript_id "Ledus.S4G157400.t1"; gene_id "Ledus.S4G157400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1806.t1 is derived from g8669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12695995	12699089	.	-	.	Ledus.S2G168800
Ledus.S2	AUGUSTUS	transcript	12695995	12699089	.	-	.	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	stop_codon	12695992	12695994	.	-	0	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	CDS	12695995	12696672	0.83	-	0	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	exon	12695995	12696672	.	-	.	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	intron	12696673	12696772	.	-	.	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	CDS	12696773	12696949	0.56	-	0	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	exon	12696773	12696949	.	-	.	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	intron	12696950	12697041	.	-	.	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	CDS	12697042	12697188	0.79	-	0	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	exon	12697042	12697188	.	-	.	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	intron	12697189	12697321	.	-	.	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	CDS	12697322	12698776	0.78	-	0	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	exon	12697322	12698776	.	-	.	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	intron	12698777	12698849	.	-	.	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	CDS	12698850	12699089	0.99	-	0	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	exon	12698850	12699089	.	-	.	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
Ledus.S2	AUGUSTUS	start_codon	12699087	12699089	.	-	0	transcript_id "Ledus.S2G168800.t1"; gene_id "Ledus.S2G168800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8359.t1 is derived from g13031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11071586	11073143	.	+	.	Ledus.S5G113700
Ledus.S5	AUGUSTUS	transcript	11071586	11073143	.	+	.	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	start_codon	11071586	11071588	.	+	0	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	CDS	11071586	11071765	0.97	+	0	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	exon	11071586	11071765	.	+	.	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	intron	11071766	11071873	.	+	.	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	CDS	11071874	11071980	0.98	+	0	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	exon	11071874	11071980	.	+	.	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	intron	11071981	11072104	.	+	.	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	CDS	11072105	11072621	0.61	+	1	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	exon	11072105	11072621	.	+	.	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	intron	11072622	11072732	.	+	.	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	CDS	11072733	11072848	0.61	+	0	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	exon	11072733	11072848	.	+	.	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	intron	11072849	11072938	.	+	.	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	CDS	11072939	11073143	0.97	+	1	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	exon	11072939	11073143	.	+	.	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
Ledus.S5	AUGUSTUS	stop_codon	11073144	11073146	.	+	0	transcript_id "Ledus.S5G113700.t1"; gene_id "Ledus.S5G113700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1119.t1 is derived from g7980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7662146	7670519	.	-	.	Ledus.S2G100100
Ledus.S2	AUGUSTUS	transcript	7662146	7670519	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	stop_codon	7662143	7662145	.	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7662146	7662248	1	-	1	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7662146	7662248	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7662249	7662341	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7662342	7662562	1	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7662342	7662562	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7662563	7662646	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7662647	7662795	1	-	2	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7662647	7662795	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7662796	7662885	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7662886	7662902	0.9	-	1	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7662886	7662902	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7662903	7663038	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7663039	7663105	0.9	-	2	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7663039	7663105	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7663106	7663193	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7663194	7663607	1	-	2	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7663194	7663607	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7663608	7663677	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7663678	7664359	0.63	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7663678	7664359	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7664360	7664467	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7664468	7664659	0.61	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7664468	7664659	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7664660	7664783	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7664784	7665420	0.97	-	1	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7664784	7665420	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7665421	7665564	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7665565	7665755	1	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7665565	7665755	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7665756	7665844	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7665845	7666279	1	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7665845	7666279	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7666280	7666436	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7666437	7666598	1	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7666437	7666598	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7666599	7666685	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7666686	7666772	1	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7666686	7666772	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7666773	7666877	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7666878	7667016	0.83	-	1	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7666878	7667016	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7667017	7667140	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7667141	7667242	0.98	-	1	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7667141	7667242	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7667243	7667421	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7667422	7667494	0.84	-	2	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7667422	7667494	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7667495	7667618	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7667619	7667876	0.98	-	2	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7667619	7667876	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7667877	7668085	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7668086	7668353	1	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7668086	7668353	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7668354	7668541	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7668542	7668597	1	-	2	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7668542	7668597	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7668598	7668714	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7668715	7668964	0.63	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7668715	7668964	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7668965	7669106	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7669107	7669162	0.98	-	2	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7669107	7669162	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7669163	7669293	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7669294	7669671	0.85	-	2	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7669294	7669671	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7669672	7669787	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7669788	7669896	0.95	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7669788	7669896	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7669897	7670002	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7670003	7670224	1	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7670003	7670224	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	intron	7670225	7670345	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	CDS	7670346	7670519	0.87	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	exon	7670346	7670519	.	-	.	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
Ledus.S2	AUGUSTUS	start_codon	7670517	7670519	.	-	0	transcript_id "Ledus.S2G100100.t1"; gene_id "Ledus.S2G100100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2725.t1 is derived from g159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2563314	2565488	.	-	.	Ledus.S1G014600
Ledus.S1	AUGUSTUS	transcript	2563314	2565488	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	stop_codon	2563311	2563313	.	-	0	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	CDS	2563314	2563602	1	-	1	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	exon	2563314	2563602	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	intron	2563603	2563683	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	CDS	2563684	2563694	1	-	0	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	exon	2563684	2563694	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	intron	2563695	2563817	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	CDS	2563818	2563847	1	-	0	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	exon	2563818	2563847	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	intron	2563848	2564004	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	CDS	2564005	2564166	1	-	0	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	exon	2564005	2564166	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	intron	2564167	2564380	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	CDS	2564381	2564456	1	-	1	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	exon	2564381	2564456	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	intron	2564457	2564597	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	CDS	2564598	2564677	1	-	0	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	exon	2564598	2564677	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	intron	2564678	2564894	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	CDS	2564895	2565110	1	-	0	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	exon	2564895	2565110	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	intron	2565111	2565248	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	CDS	2565249	2565328	1	-	2	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	exon	2565249	2565328	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	intron	2565329	2565421	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	CDS	2565422	2565488	0.95	-	0	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	exon	2565422	2565488	.	-	.	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
Ledus.S1	AUGUSTUS	start_codon	2565486	2565488	.	-	0	transcript_id "Ledus.S1G014600.t1"; gene_id "Ledus.S1G014600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg672.t1 is derived from g7533.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4034371	4034580	.	-	.	Ledus.S2G055400
Ledus.S2	AUGUSTUS	transcript	4034371	4034580	.	-	.	transcript_id "Ledus.S2G055400.t1"; gene_id "Ledus.S2G055400"
Ledus.S2	AUGUSTUS	stop_codon	4034368	4034370	.	-	0	transcript_id "Ledus.S2G055400.t1"; gene_id "Ledus.S2G055400"
Ledus.S2	AUGUSTUS	CDS	4034371	4034580	0.57	-	0	transcript_id "Ledus.S2G055400.t1"; gene_id "Ledus.S2G055400"
Ledus.S2	AUGUSTUS	exon	4034371	4034580	.	-	.	transcript_id "Ledus.S2G055400.t1"; gene_id "Ledus.S2G055400"
Ledus.S2	AUGUSTUS	start_codon	4034578	4034580	.	-	0	transcript_id "Ledus.S2G055400.t1"; gene_id "Ledus.S2G055400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1552.t1 is derived from g8413.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10893119	10893796	.	+	.	Ledus.S2G143400
Ledus.S2	AUGUSTUS	transcript	10893119	10893796	.	+	.	transcript_id "Ledus.S2G143400.t1"; gene_id "Ledus.S2G143400"
Ledus.S2	AUGUSTUS	start_codon	10893119	10893121	.	+	0	transcript_id "Ledus.S2G143400.t1"; gene_id "Ledus.S2G143400"
Ledus.S2	AUGUSTUS	CDS	10893119	10893436	0.78	+	0	transcript_id "Ledus.S2G143400.t1"; gene_id "Ledus.S2G143400"
Ledus.S2	AUGUSTUS	exon	10893119	10893436	.	+	.	transcript_id "Ledus.S2G143400.t1"; gene_id "Ledus.S2G143400"
Ledus.S2	AUGUSTUS	intron	10893437	10893595	.	+	.	transcript_id "Ledus.S2G143400.t1"; gene_id "Ledus.S2G143400"
Ledus.S2	AUGUSTUS	CDS	10893596	10893796	0.69	+	0	transcript_id "Ledus.S2G143400.t1"; gene_id "Ledus.S2G143400"
Ledus.S2	AUGUSTUS	exon	10893596	10893796	.	+	.	transcript_id "Ledus.S2G143400.t1"; gene_id "Ledus.S2G143400"
Ledus.S2	AUGUSTUS	stop_codon	10893797	10893799	.	+	0	transcript_id "Ledus.S2G143400.t1"; gene_id "Ledus.S2G143400"
# This transcript jg3681.t2 is derived from g1117.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3682.t1 is derived from g1118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10640674	10641536	.	-	.	Ledus.S1G110300
Ledus.S1	AUGUSTUS	transcript	10640674	10641536	.	-	.	transcript_id "Ledus.S1G110300.t1"; gene_id "Ledus.S1G110300"
Ledus.S1	AUGUSTUS	stop_codon	10640671	10640673	.	-	0	transcript_id "Ledus.S1G110300.t1"; gene_id "Ledus.S1G110300"
Ledus.S1	AUGUSTUS	CDS	10640674	10641052	0.95	-	1	transcript_id "Ledus.S1G110300.t1"; gene_id "Ledus.S1G110300"
Ledus.S1	AUGUSTUS	exon	10640674	10641052	.	-	.	transcript_id "Ledus.S1G110300.t1"; gene_id "Ledus.S1G110300"
Ledus.S1	AUGUSTUS	intron	10641053	10641183	.	-	.	transcript_id "Ledus.S1G110300.t1"; gene_id "Ledus.S1G110300"
Ledus.S1	AUGUSTUS	CDS	10641184	10641536	0.79	-	0	transcript_id "Ledus.S1G110300.t1"; gene_id "Ledus.S1G110300"
Ledus.S1	AUGUSTUS	exon	10641184	10641536	.	-	.	transcript_id "Ledus.S1G110300.t1"; gene_id "Ledus.S1G110300"
Ledus.S1	AUGUSTUS	start_codon	10641534	10641536	.	-	0	transcript_id "Ledus.S1G110300.t1"; gene_id "Ledus.S1G110300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg323.t1 is derived from g7184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1668510	1669510	.	+	.	Ledus.S2G020500
Ledus.S2	AUGUSTUS	transcript	1668510	1669510	.	+	.	transcript_id "Ledus.S2G020500.t1"; gene_id "Ledus.S2G020500"
Ledus.S2	AUGUSTUS	start_codon	1668510	1668512	.	+	0	transcript_id "Ledus.S2G020500.t1"; gene_id "Ledus.S2G020500"
Ledus.S2	AUGUSTUS	CDS	1668510	1669220	0.54	+	0	transcript_id "Ledus.S2G020500.t1"; gene_id "Ledus.S2G020500"
Ledus.S2	AUGUSTUS	exon	1668510	1669220	.	+	.	transcript_id "Ledus.S2G020500.t1"; gene_id "Ledus.S2G020500"
Ledus.S2	AUGUSTUS	intron	1669221	1669351	.	+	.	transcript_id "Ledus.S2G020500.t1"; gene_id "Ledus.S2G020500"
Ledus.S2	AUGUSTUS	CDS	1669352	1669510	0.62	+	0	transcript_id "Ledus.S2G020500.t1"; gene_id "Ledus.S2G020500"
Ledus.S2	AUGUSTUS	exon	1669352	1669510	.	+	.	transcript_id "Ledus.S2G020500.t1"; gene_id "Ledus.S2G020500"
Ledus.S2	AUGUSTUS	stop_codon	1669511	1669513	.	+	0	transcript_id "Ledus.S2G020500.t1"; gene_id "Ledus.S2G020500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3246.t1 is derived from g681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7093131	7097999	.	+	.	Ledus.S1G066700
Ledus.S1	AUGUSTUS	transcript	7093131	7097999	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	start_codon	7093131	7093133	.	+	0	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	CDS	7093131	7093704	1	+	0	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	exon	7093131	7093704	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	intron	7093705	7093841	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	CDS	7093842	7094040	1	+	2	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	exon	7093842	7094040	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	intron	7094041	7094221	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	CDS	7094222	7094499	1	+	1	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	exon	7094222	7094499	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	intron	7094500	7094628	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	CDS	7094629	7094729	1	+	2	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	exon	7094629	7094729	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	intron	7094730	7094816	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	CDS	7094817	7094924	1	+	0	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	exon	7094817	7094924	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	intron	7094925	7095109	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	CDS	7095110	7095331	1	+	0	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	exon	7095110	7095331	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	intron	7095332	7095420	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	CDS	7095421	7095441	0.79	+	0	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	exon	7095421	7095441	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	intron	7095442	7095516	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	CDS	7095517	7095530	0.99	+	0	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	exon	7095517	7095530	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	intron	7095531	7095681	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	CDS	7095682	7097474	0.63	+	1	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	exon	7095682	7097474	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	intron	7097475	7097548	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	CDS	7097549	7097599	0.62	+	2	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	exon	7097549	7097599	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	intron	7097600	7097808	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	CDS	7097809	7097999	0.8	+	2	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	exon	7097809	7097999	.	+	.	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
Ledus.S1	AUGUSTUS	stop_codon	7098000	7098002	.	+	0	transcript_id "Ledus.S1G066700.t1"; gene_id "Ledus.S1G066700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8406.t1 is derived from g13078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11505979	11506584	.	-	.	Ledus.S5G118400
Ledus.S5	AUGUSTUS	transcript	11505979	11506584	.	-	.	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	stop_codon	11505976	11505978	.	-	0	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	CDS	11505979	11506020	1	-	0	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	exon	11505979	11506020	.	-	.	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	intron	11506021	11506112	.	-	.	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	CDS	11506113	11506229	1	-	0	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	exon	11506113	11506229	.	-	.	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	intron	11506230	11506328	.	-	.	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	CDS	11506329	11506404	0.53	-	1	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	exon	11506329	11506404	.	-	.	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	intron	11506405	11506558	.	-	.	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	CDS	11506559	11506584	0.48	-	0	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	exon	11506559	11506584	.	-	.	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
Ledus.S5	AUGUSTUS	start_codon	11506582	11506584	.	-	0	transcript_id "Ledus.S5G118400.t1"; gene_id "Ledus.S5G118400"
# This transcript jg11416.t2 is derived from g5034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11417.t1 is derived from g5035.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4139106	4141930	.	+	.	Ledus.S4G057300
Ledus.S4	AUGUSTUS	transcript	4139106	4141930	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	start_codon	4139106	4139108	.	+	0	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4139106	4139740	0.97	+	0	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4139106	4139740	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4139741	4139847	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4139848	4139960	0.97	+	1	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4139848	4139960	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4139961	4140081	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4140082	4140187	0.95	+	2	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4140082	4140187	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4140188	4140293	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4140294	4140363	0.96	+	1	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4140294	4140363	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4140364	4140479	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4140480	4140587	1	+	0	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4140480	4140587	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4140588	4140687	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4140688	4140810	1	+	0	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4140688	4140810	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4140811	4140907	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4140908	4141494	1	+	0	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4140908	4141494	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4141495	4141594	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4141595	4141706	1	+	1	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4141595	4141706	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4141707	4141798	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4141799	4141930	0.99	+	0	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4141799	4141930	.	+	.	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	stop_codon	4141931	4141933	.	+	0	transcript_id "Ledus.S4G057300.t1"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	transcript	4139106	4141930	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	start_codon	4139106	4139108	.	+	0	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4139106	4139740	0.93	+	0	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4139106	4139740	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4139741	4139847	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4139848	4139960	0.92	+	1	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4139848	4139960	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4139961	4140081	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4140082	4140187	0.98	+	2	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4140082	4140187	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4140188	4140293	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4140294	4140363	0.95	+	1	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4140294	4140363	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4140364	4140479	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4140480	4140587	1	+	0	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4140480	4140587	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4140588	4140687	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4140688	4140810	1	+	0	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4140688	4140810	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4140811	4140904	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4140905	4141494	1	+	0	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4140905	4141494	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4141495	4141594	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4141595	4141706	1	+	1	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4141595	4141706	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	intron	4141707	4141798	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	CDS	4141799	4141930	1	+	0	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	exon	4141799	4141930	.	+	.	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
Ledus.S4	AUGUSTUS	stop_codon	4141931	4141933	.	+	0	transcript_id "Ledus.S4G057300.t2"; gene_id "Ledus.S4G057300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12055.t1 is derived from g5674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9237947	9238785	.	+	.	Ledus.S4G121100
Ledus.S4	AUGUSTUS	transcript	9237947	9238785	.	+	.	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	start_codon	9237947	9237949	.	+	0	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	CDS	9237947	9238031	0.98	+	0	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	exon	9237947	9238031	.	+	.	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	intron	9238032	9238114	.	+	.	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	CDS	9238115	9238203	0.95	+	2	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	exon	9238115	9238203	.	+	.	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	intron	9238204	9238408	.	+	.	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	CDS	9238409	9238503	1	+	0	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	exon	9238409	9238503	.	+	.	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	intron	9238504	9238574	.	+	.	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	CDS	9238575	9238785	0.34	+	1	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	exon	9238575	9238785	.	+	.	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
Ledus.S4	AUGUSTUS	stop_codon	9238786	9238788	.	+	0	transcript_id "Ledus.S4G121100.t1"; gene_id "Ledus.S4G121100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12979.t1 is derived from g6789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1514308	1516022	.	-	.	Ledus.S6G004100
Ledus.S6	AUGUSTUS	transcript	1514308	1516022	.	-	.	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	stop_codon	1514305	1514307	.	-	0	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	CDS	1514308	1514831	0.95	-	2	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	exon	1514308	1514831	.	-	.	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	intron	1514832	1514911	.	-	.	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	CDS	1514912	1515106	0.96	-	2	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	exon	1514912	1515106	.	-	.	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	intron	1515107	1515579	.	-	.	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	CDS	1515580	1515684	0.65	-	2	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	exon	1515580	1515684	.	-	.	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	intron	1515685	1515802	.	-	.	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	CDS	1515803	1516022	0.47	-	0	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	exon	1515803	1516022	.	-	.	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
Ledus.S6	AUGUSTUS	start_codon	1516020	1516022	.	-	0	transcript_id "Ledus.S6G004100.t1"; gene_id "Ledus.S6G004100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10555.t1 is derived from g11585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16089581	16097366	.	+	.	Ledus.S3G203200
Ledus.S3	AUGUSTUS	transcript	16089581	16097366	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	start_codon	16089581	16089583	.	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16089581	16090054	0.73	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16089581	16090054	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16090055	16090226	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16090227	16090382	0.99	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16090227	16090382	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16090383	16090502	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16090503	16090565	0.86	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16090503	16090565	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16090566	16090684	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16090685	16090753	0.96	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16090685	16090753	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16090754	16090955	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16090956	16091121	0.9	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16090956	16091121	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16091122	16091228	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16091229	16091390	1	+	2	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16091229	16091390	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16091391	16091616	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16091617	16091714	1	+	2	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16091617	16091714	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16091715	16091909	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16091910	16091984	1	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16091910	16091984	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16091985	16092127	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16092128	16092196	1	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16092128	16092196	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16092197	16092315	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16092316	16092401	1	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16092316	16092401	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16092402	16092485	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16092486	16092603	1	+	1	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16092486	16092603	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16092604	16092767	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16092768	16092866	1	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16092768	16092866	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16092867	16093014	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16093015	16093354	0.97	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16093015	16093354	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16093355	16093534	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16093535	16095235	1	+	2	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16093535	16095235	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16095236	16095325	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16095326	16095381	1	+	2	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16095326	16095381	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16095382	16095519	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16095520	16095621	1	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16095520	16095621	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16095622	16095913	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16095914	16096018	1	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16095914	16096018	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16096019	16096160	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16096161	16096235	1	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16096161	16096235	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16096236	16096501	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16096502	16096570	1	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16096502	16096570	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16096571	16096677	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16096678	16096746	1	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16096678	16096746	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16096747	16096931	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16096932	16097033	1	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16096932	16097033	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16097034	16097116	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16097117	16097239	1	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16097117	16097239	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	intron	16097240	16097333	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	CDS	16097334	16097366	1	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	exon	16097334	16097366	.	+	.	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
Ledus.S3	AUGUSTUS	stop_codon	16097367	16097369	.	+	0	transcript_id "Ledus.S3G203200.t1"; gene_id "Ledus.S3G203200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10201.t1 is derived from g11231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13535421	13536446	.	-	.	Ledus.S3G167800
Ledus.S3	AUGUSTUS	transcript	13535421	13536446	.	-	.	transcript_id "Ledus.S3G167800.t1"; gene_id "Ledus.S3G167800"
Ledus.S3	AUGUSTUS	stop_codon	13535418	13535420	.	-	0	transcript_id "Ledus.S3G167800.t1"; gene_id "Ledus.S3G167800"
Ledus.S3	AUGUSTUS	CDS	13535421	13536446	1	-	0	transcript_id "Ledus.S3G167800.t1"; gene_id "Ledus.S3G167800"
Ledus.S3	AUGUSTUS	exon	13535421	13536446	.	-	.	transcript_id "Ledus.S3G167800.t1"; gene_id "Ledus.S3G167800"
Ledus.S3	AUGUSTUS	start_codon	13536444	13536446	.	-	0	transcript_id "Ledus.S3G167800.t1"; gene_id "Ledus.S3G167800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4770.t1 is derived from g2208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19673119	19674663	.	+	.	Ledus.S1G219100
Ledus.S1	AUGUSTUS	transcript	19673119	19674663	.	+	.	transcript_id "Ledus.S1G219100.t1"; gene_id "Ledus.S1G219100"
Ledus.S1	AUGUSTUS	start_codon	19673119	19673121	.	+	0	transcript_id "Ledus.S1G219100.t1"; gene_id "Ledus.S1G219100"
Ledus.S1	AUGUSTUS	CDS	19673119	19673526	1	+	0	transcript_id "Ledus.S1G219100.t1"; gene_id "Ledus.S1G219100"
Ledus.S1	AUGUSTUS	exon	19673119	19673526	.	+	.	transcript_id "Ledus.S1G219100.t1"; gene_id "Ledus.S1G219100"
Ledus.S1	AUGUSTUS	intron	19673527	19673613	.	+	.	transcript_id "Ledus.S1G219100.t1"; gene_id "Ledus.S1G219100"
Ledus.S1	AUGUSTUS	CDS	19673614	19673691	0.99	+	0	transcript_id "Ledus.S1G219100.t1"; gene_id "Ledus.S1G219100"
Ledus.S1	AUGUSTUS	exon	19673614	19673691	.	+	.	transcript_id "Ledus.S1G219100.t1"; gene_id "Ledus.S1G219100"
Ledus.S1	AUGUSTUS	intron	19673692	19673787	.	+	.	transcript_id "Ledus.S1G219100.t1"; gene_id "Ledus.S1G219100"
Ledus.S1	AUGUSTUS	CDS	19673788	19674663	0.99	+	0	transcript_id "Ledus.S1G219100.t1"; gene_id "Ledus.S1G219100"
Ledus.S1	AUGUSTUS	exon	19673788	19674663	.	+	.	transcript_id "Ledus.S1G219100.t1"; gene_id "Ledus.S1G219100"
Ledus.S1	AUGUSTUS	stop_codon	19674664	19674666	.	+	0	transcript_id "Ledus.S1G219100.t1"; gene_id "Ledus.S1G219100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10049.t1 is derived from g11079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12182983	12184736	.	+	.	Ledus.S3G152600
Ledus.S3	AUGUSTUS	transcript	12182983	12184736	.	+	.	transcript_id "Ledus.S3G152600.t1"; gene_id "Ledus.S3G152600"
Ledus.S3	AUGUSTUS	start_codon	12182983	12182985	.	+	0	transcript_id "Ledus.S3G152600.t1"; gene_id "Ledus.S3G152600"
Ledus.S3	AUGUSTUS	CDS	12182983	12183987	0.94	+	0	transcript_id "Ledus.S3G152600.t1"; gene_id "Ledus.S3G152600"
Ledus.S3	AUGUSTUS	exon	12182983	12183987	.	+	.	transcript_id "Ledus.S3G152600.t1"; gene_id "Ledus.S3G152600"
Ledus.S3	AUGUSTUS	intron	12183988	12184097	.	+	.	transcript_id "Ledus.S3G152600.t1"; gene_id "Ledus.S3G152600"
Ledus.S3	AUGUSTUS	CDS	12184098	12184736	1	+	0	transcript_id "Ledus.S3G152600.t1"; gene_id "Ledus.S3G152600"
Ledus.S3	AUGUSTUS	exon	12184098	12184736	.	+	.	transcript_id "Ledus.S3G152600.t1"; gene_id "Ledus.S3G152600"
Ledus.S3	AUGUSTUS	stop_codon	12184737	12184739	.	+	0	transcript_id "Ledus.S3G152600.t1"; gene_id "Ledus.S3G152600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12688.t1 is derived from g6310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13886131	13886739	.	+	.	Ledus.S4G184400
Ledus.S4	AUGUSTUS	transcript	13886131	13886739	.	+	.	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	start_codon	13886131	13886133	.	+	0	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	CDS	13886131	13886163	0.9	+	0	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	exon	13886131	13886163	.	+	.	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	intron	13886164	13886238	.	+	.	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	CDS	13886239	13886346	1	+	0	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	exon	13886239	13886346	.	+	.	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	intron	13886347	13886441	.	+	.	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	CDS	13886442	13886517	1	+	0	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	exon	13886442	13886517	.	+	.	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	intron	13886518	13886581	.	+	.	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	CDS	13886582	13886739	0.95	+	2	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	exon	13886582	13886739	.	+	.	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
Ledus.S4	AUGUSTUS	stop_codon	13886740	13886742	.	+	0	transcript_id "Ledus.S4G184400.t1"; gene_id "Ledus.S4G184400"
# This transcript jg7825.t2 is derived from g12496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7826.t1 is derived from g12497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7277295	7279125	.	-	.	Ledus.S5G060400
Ledus.S5	AUGUSTUS	transcript	7277295	7279125	.	-	.	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	stop_codon	7277292	7277294	.	-	0	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	CDS	7277295	7277454	1	-	1	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	exon	7277295	7277454	.	-	.	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	intron	7277455	7277643	.	-	.	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	CDS	7277644	7277955	1	-	1	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	exon	7277644	7277955	.	-	.	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	intron	7277956	7278074	.	-	.	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	CDS	7278075	7278374	0.93	-	1	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	exon	7278075	7278374	.	-	.	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	intron	7278375	7278483	.	-	.	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	CDS	7278484	7278655	1	-	2	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	exon	7278484	7278655	.	-	.	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	intron	7278656	7278868	.	-	.	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	CDS	7278869	7278898	0.76	-	2	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	exon	7278869	7278898	.	-	.	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	intron	7278899	7279013	.	-	.	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	CDS	7279014	7279125	0.56	-	0	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	exon	7279014	7279125	.	-	.	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
Ledus.S5	AUGUSTUS	start_codon	7279123	7279125	.	-	0	transcript_id "Ledus.S5G060400.t1"; gene_id "Ledus.S5G060400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2078.t1 is derived from g8941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14599266	14600441	.	-	.	Ledus.S2G196000
Ledus.S2	AUGUSTUS	transcript	14599266	14600441	.	-	.	transcript_id "Ledus.S2G196000.t1"; gene_id "Ledus.S2G196000"
Ledus.S2	AUGUSTUS	stop_codon	14599263	14599265	.	-	0	transcript_id "Ledus.S2G196000.t1"; gene_id "Ledus.S2G196000"
Ledus.S2	AUGUSTUS	CDS	14599266	14599804	0.4	-	2	transcript_id "Ledus.S2G196000.t1"; gene_id "Ledus.S2G196000"
Ledus.S2	AUGUSTUS	exon	14599266	14599804	.	-	.	transcript_id "Ledus.S2G196000.t1"; gene_id "Ledus.S2G196000"
Ledus.S2	AUGUSTUS	intron	14599805	14599945	.	-	.	transcript_id "Ledus.S2G196000.t1"; gene_id "Ledus.S2G196000"
Ledus.S2	AUGUSTUS	CDS	14599946	14600441	0.28	-	0	transcript_id "Ledus.S2G196000.t1"; gene_id "Ledus.S2G196000"
Ledus.S2	AUGUSTUS	exon	14599946	14600441	.	-	.	transcript_id "Ledus.S2G196000.t1"; gene_id "Ledus.S2G196000"
Ledus.S2	AUGUSTUS	start_codon	14600439	14600441	.	-	0	transcript_id "Ledus.S2G196000.t1"; gene_id "Ledus.S2G196000"
# This transcript jg6952.t2 is derived from g6483.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6953.t1 is derived from g6484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	244837	245450	.	+	.	Ledus.C7G001400
Ledus.C7	AUGUSTUS	transcript	244837	245450	.	+	.	transcript_id "Ledus.C7G001400.t1"; gene_id "Ledus.C7G001400"
Ledus.C7	AUGUSTUS	start_codon	244837	244839	.	+	0	transcript_id "Ledus.C7G001400.t1"; gene_id "Ledus.C7G001400"
Ledus.C7	AUGUSTUS	CDS	244837	244917	0.47	+	0	transcript_id "Ledus.C7G001400.t1"; gene_id "Ledus.C7G001400"
Ledus.C7	AUGUSTUS	exon	244837	244917	.	+	.	transcript_id "Ledus.C7G001400.t1"; gene_id "Ledus.C7G001400"
Ledus.C7	AUGUSTUS	intron	244918	245068	.	+	.	transcript_id "Ledus.C7G001400.t1"; gene_id "Ledus.C7G001400"
Ledus.C7	AUGUSTUS	CDS	245069	245134	0.47	+	0	transcript_id "Ledus.C7G001400.t1"; gene_id "Ledus.C7G001400"
Ledus.C7	AUGUSTUS	exon	245069	245134	.	+	.	transcript_id "Ledus.C7G001400.t1"; gene_id "Ledus.C7G001400"
Ledus.C7	AUGUSTUS	intron	245135	245399	.	+	.	transcript_id "Ledus.C7G001400.t1"; gene_id "Ledus.C7G001400"
Ledus.C7	AUGUSTUS	CDS	245400	245450	0.39	+	0	transcript_id "Ledus.C7G001400.t1"; gene_id "Ledus.C7G001400"
Ledus.C7	AUGUSTUS	exon	245400	245450	.	+	.	transcript_id "Ledus.C7G001400.t1"; gene_id "Ledus.C7G001400"
Ledus.C7	AUGUSTUS	stop_codon	245451	245453	.	+	0	transcript_id "Ledus.C7G001400.t1"; gene_id "Ledus.C7G001400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7055.t1 is derived from g6586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1093304	1093573	.	+	.	Ledus.C7G011600
Ledus.C7	AUGUSTUS	transcript	1093304	1093573	.	+	.	transcript_id "Ledus.C7G011600.t1"; gene_id "Ledus.C7G011600"
Ledus.C7	AUGUSTUS	start_codon	1093304	1093306	.	+	0	transcript_id "Ledus.C7G011600.t1"; gene_id "Ledus.C7G011600"
Ledus.C7	AUGUSTUS	CDS	1093304	1093573	0.98	+	0	transcript_id "Ledus.C7G011600.t1"; gene_id "Ledus.C7G011600"
Ledus.C7	AUGUSTUS	exon	1093304	1093573	.	+	.	transcript_id "Ledus.C7G011600.t1"; gene_id "Ledus.C7G011600"
Ledus.C7	AUGUSTUS	stop_codon	1093574	1093576	.	+	0	transcript_id "Ledus.C7G011600.t1"; gene_id "Ledus.C7G011600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1583.t1 is derived from g8444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11121719	11122139	.	+	.	Ledus.S2G146500
Ledus.S2	AUGUSTUS	transcript	11121719	11122139	.	+	.	transcript_id "Ledus.S2G146500.t1"; gene_id "Ledus.S2G146500"
Ledus.S2	AUGUSTUS	start_codon	11121719	11121721	.	+	0	transcript_id "Ledus.S2G146500.t1"; gene_id "Ledus.S2G146500"
Ledus.S2	AUGUSTUS	CDS	11121719	11121865	0.66	+	0	transcript_id "Ledus.S2G146500.t1"; gene_id "Ledus.S2G146500"
Ledus.S2	AUGUSTUS	exon	11121719	11121865	.	+	.	transcript_id "Ledus.S2G146500.t1"; gene_id "Ledus.S2G146500"
Ledus.S2	AUGUSTUS	intron	11121866	11121947	.	+	.	transcript_id "Ledus.S2G146500.t1"; gene_id "Ledus.S2G146500"
Ledus.S2	AUGUSTUS	CDS	11121948	11122139	0.66	+	0	transcript_id "Ledus.S2G146500.t1"; gene_id "Ledus.S2G146500"
Ledus.S2	AUGUSTUS	exon	11121948	11122139	.	+	.	transcript_id "Ledus.S2G146500.t1"; gene_id "Ledus.S2G146500"
Ledus.S2	AUGUSTUS	stop_codon	11122140	11122142	.	+	0	transcript_id "Ledus.S2G146500.t1"; gene_id "Ledus.S2G146500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7121.t1 is derived from g6652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1672071	1676307	.	+	.	Ledus.C7G018200
Ledus.C7	AUGUSTUS	transcript	1672071	1676307	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	start_codon	1672071	1672073	.	+	0	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	CDS	1672071	1672125	0.96	+	0	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	exon	1672071	1672125	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	intron	1672126	1672690	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	CDS	1672691	1674616	0.98	+	2	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	exon	1672691	1674616	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	intron	1674617	1674859	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	CDS	1674860	1674913	0.43	+	2	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	exon	1674860	1674913	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	intron	1674914	1674994	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	CDS	1674995	1675165	0.43	+	2	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	exon	1674995	1675165	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	intron	1675166	1675319	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	CDS	1675320	1675471	1	+	2	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	exon	1675320	1675471	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	intron	1675472	1675746	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	CDS	1675747	1676068	1	+	0	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	exon	1675747	1676068	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	intron	1676069	1676158	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	CDS	1676159	1676307	0.2	+	2	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	exon	1676159	1676307	.	+	.	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
Ledus.C7	AUGUSTUS	stop_codon	1676308	1676310	.	+	0	transcript_id "Ledus.C7G018200.t1"; gene_id "Ledus.C7G018200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6539.t1 is derived from g3982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32215401	32216161	.	+	.	Ledus.S1G396000
Ledus.S1	AUGUSTUS	transcript	32215401	32216161	.	+	.	transcript_id "Ledus.S1G396000.t1"; gene_id "Ledus.S1G396000"
Ledus.S1	AUGUSTUS	start_codon	32215401	32215403	.	+	0	transcript_id "Ledus.S1G396000.t1"; gene_id "Ledus.S1G396000"
Ledus.S1	AUGUSTUS	CDS	32215401	32215787	1	+	0	transcript_id "Ledus.S1G396000.t1"; gene_id "Ledus.S1G396000"
Ledus.S1	AUGUSTUS	exon	32215401	32215787	.	+	.	transcript_id "Ledus.S1G396000.t1"; gene_id "Ledus.S1G396000"
Ledus.S1	AUGUSTUS	intron	32215788	32215887	.	+	.	transcript_id "Ledus.S1G396000.t1"; gene_id "Ledus.S1G396000"
Ledus.S1	AUGUSTUS	CDS	32215888	32215947	1	+	0	transcript_id "Ledus.S1G396000.t1"; gene_id "Ledus.S1G396000"
Ledus.S1	AUGUSTUS	exon	32215888	32215947	.	+	.	transcript_id "Ledus.S1G396000.t1"; gene_id "Ledus.S1G396000"
Ledus.S1	AUGUSTUS	intron	32215948	32216050	.	+	.	transcript_id "Ledus.S1G396000.t1"; gene_id "Ledus.S1G396000"
Ledus.S1	AUGUSTUS	CDS	32216051	32216161	0.98	+	0	transcript_id "Ledus.S1G396000.t1"; gene_id "Ledus.S1G396000"
Ledus.S1	AUGUSTUS	exon	32216051	32216161	.	+	.	transcript_id "Ledus.S1G396000.t1"; gene_id "Ledus.S1G396000"
Ledus.S1	AUGUSTUS	stop_codon	32216162	32216164	.	+	0	transcript_id "Ledus.S1G396000.t1"; gene_id "Ledus.S1G396000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7157.t1 is derived from g6688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1835691	1836374	.	-	.	Ledus.C7G021800
Ledus.C7	AUGUSTUS	transcript	1835691	1836374	.	-	.	transcript_id "Ledus.C7G021800.t1"; gene_id "Ledus.C7G021800"
Ledus.C7	AUGUSTUS	stop_codon	1835688	1835690	.	-	0	transcript_id "Ledus.C7G021800.t1"; gene_id "Ledus.C7G021800"
Ledus.C7	AUGUSTUS	CDS	1835691	1836374	0.58	-	0	transcript_id "Ledus.C7G021800.t1"; gene_id "Ledus.C7G021800"
Ledus.C7	AUGUSTUS	exon	1835691	1836374	.	-	.	transcript_id "Ledus.C7G021800.t1"; gene_id "Ledus.C7G021800"
Ledus.C7	AUGUSTUS	start_codon	1836372	1836374	.	-	0	transcript_id "Ledus.C7G021800.t1"; gene_id "Ledus.C7G021800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4025.t1 is derived from g1461.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14246524	14246897	.	-	.	Ledus.S1G144600
Ledus.S1	AUGUSTUS	transcript	14246524	14246897	.	-	.	transcript_id "Ledus.S1G144600.t1"; gene_id "Ledus.S1G144600"
Ledus.S1	AUGUSTUS	stop_codon	14246521	14246523	.	-	0	transcript_id "Ledus.S1G144600.t1"; gene_id "Ledus.S1G144600"
Ledus.S1	AUGUSTUS	CDS	14246524	14246651	0.57	-	2	transcript_id "Ledus.S1G144600.t1"; gene_id "Ledus.S1G144600"
Ledus.S1	AUGUSTUS	exon	14246524	14246651	.	-	.	transcript_id "Ledus.S1G144600.t1"; gene_id "Ledus.S1G144600"
Ledus.S1	AUGUSTUS	intron	14246652	14246767	.	-	.	transcript_id "Ledus.S1G144600.t1"; gene_id "Ledus.S1G144600"
Ledus.S1	AUGUSTUS	CDS	14246768	14246897	0.57	-	0	transcript_id "Ledus.S1G144600.t1"; gene_id "Ledus.S1G144600"
Ledus.S1	AUGUSTUS	exon	14246768	14246897	.	-	.	transcript_id "Ledus.S1G144600.t1"; gene_id "Ledus.S1G144600"
Ledus.S1	AUGUSTUS	start_codon	14246895	14246897	.	-	0	transcript_id "Ledus.S1G144600.t1"; gene_id "Ledus.S1G144600"
# This transcript jg10289.t2 is derived from g11319.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10290.t1 is derived from g11320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14098279	14099334	.	-	.	Ledus.S3G176700
Ledus.S3	AUGUSTUS	transcript	14098279	14099334	.	-	.	transcript_id "Ledus.S3G176700.t1"; gene_id "Ledus.S3G176700"
Ledus.S3	AUGUSTUS	stop_codon	14098276	14098278	.	-	0	transcript_id "Ledus.S3G176700.t1"; gene_id "Ledus.S3G176700"
Ledus.S3	AUGUSTUS	CDS	14098279	14098766	0.99	-	2	transcript_id "Ledus.S3G176700.t1"; gene_id "Ledus.S3G176700"
Ledus.S3	AUGUSTUS	exon	14098279	14098766	.	-	.	transcript_id "Ledus.S3G176700.t1"; gene_id "Ledus.S3G176700"
Ledus.S3	AUGUSTUS	intron	14098767	14098844	.	-	.	transcript_id "Ledus.S3G176700.t1"; gene_id "Ledus.S3G176700"
Ledus.S3	AUGUSTUS	CDS	14098845	14099334	0.59	-	0	transcript_id "Ledus.S3G176700.t1"; gene_id "Ledus.S3G176700"
Ledus.S3	AUGUSTUS	exon	14098845	14099334	.	-	.	transcript_id "Ledus.S3G176700.t1"; gene_id "Ledus.S3G176700"
Ledus.S3	AUGUSTUS	start_codon	14099332	14099334	.	-	0	transcript_id "Ledus.S3G176700.t1"; gene_id "Ledus.S3G176700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2481.t1 is derived from g9344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18385026	18388637	.	-	.	Ledus.S2G236300
Ledus.S2	AUGUSTUS	transcript	18385026	18388637	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	stop_codon	18385023	18385025	.	-	0	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18385026	18385028	0.96	-	0	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18385026	18385028	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18385029	18385180	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18385181	18385209	0.94	-	2	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18385181	18385209	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18385210	18385314	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18385315	18385396	0.96	-	0	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18385315	18385396	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18385397	18385478	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18385479	18385565	1	-	0	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18385479	18385565	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18385566	18385688	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18385689	18385923	1	-	1	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18385689	18385923	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18385924	18386003	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18386004	18386083	1	-	0	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18386004	18386083	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18386084	18386178	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18386179	18386337	1	-	0	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18386179	18386337	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18386338	18386424	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18386425	18386485	1	-	1	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18386425	18386485	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18386486	18386592	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18386593	18386716	0.99	-	2	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18386593	18386716	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18386717	18386869	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18386870	18386935	1	-	2	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18386870	18386935	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18386936	18387026	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18387027	18387216	1	-	0	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18387027	18387216	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18387217	18387306	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18387307	18387619	1	-	1	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18387307	18387619	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18387620	18387696	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18387697	18387822	1	-	1	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18387697	18387822	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18387823	18387960	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18387961	18388050	1	-	1	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18387961	18388050	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18388051	18388127	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18388128	18388209	1	-	2	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18388128	18388209	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18388210	18388284	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18388285	18388361	1	-	1	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18388285	18388361	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	intron	18388362	18388449	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	CDS	18388450	18388637	0.99	-	0	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	exon	18388450	18388637	.	-	.	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
Ledus.S2	AUGUSTUS	start_codon	18388635	18388637	.	-	0	transcript_id "Ledus.S2G236300.t1"; gene_id "Ledus.S2G236300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10716.t1 is derived from g11746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17342760	17344485	.	+	.	Ledus.S3G219300
Ledus.S3	AUGUSTUS	transcript	17342760	17344485	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	start_codon	17342760	17342762	.	+	0	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	CDS	17342760	17343209	0.97	+	0	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	exon	17342760	17343209	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	intron	17343210	17343304	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	CDS	17343305	17343367	1	+	0	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	exon	17343305	17343367	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	intron	17343368	17343457	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	CDS	17343458	17343544	1	+	0	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	exon	17343458	17343544	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	intron	17343545	17343688	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	CDS	17343689	17343926	1	+	0	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	exon	17343689	17343926	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	intron	17343927	17344045	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	CDS	17344046	17344119	1	+	2	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	exon	17344046	17344119	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	intron	17344120	17344212	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	CDS	17344213	17344308	1	+	0	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	exon	17344213	17344308	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	intron	17344309	17344404	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	CDS	17344405	17344485	1	+	0	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	exon	17344405	17344485	.	+	.	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
Ledus.S3	AUGUSTUS	stop_codon	17344486	17344488	.	+	0	transcript_id "Ledus.S3G219300.t1"; gene_id "Ledus.S3G219300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5141.t1 is derived from g2580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21916340	21922319	.	-	.	Ledus.S1G256200
Ledus.S1	AUGUSTUS	transcript	21916340	21922319	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	stop_codon	21916337	21916339	.	-	0	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21916340	21916638	0.98	-	2	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21916340	21916638	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21916639	21916725	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21916726	21916828	1	-	0	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21916726	21916828	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21916829	21916918	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21916919	21916972	1	-	0	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21916919	21916972	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21916973	21917064	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21917065	21917172	1	-	0	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21917065	21917172	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21917173	21917260	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21917261	21917611	1	-	0	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21917261	21917611	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21917612	21917734	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21917735	21918294	0.77	-	2	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21917735	21918294	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21918295	21918418	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21918419	21918458	0.59	-	0	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21918419	21918458	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21918459	21918572	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21918573	21918684	1	-	1	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21918573	21918684	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21918685	21919049	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21919050	21919183	1	-	0	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21919050	21919183	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21919184	21919595	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21919596	21919766	1	-	0	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21919596	21919766	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21919767	21920382	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21920383	21920625	1	-	0	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21920383	21920625	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21920626	21920751	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21920752	21920929	1	-	1	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21920752	21920929	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21920930	21921109	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21921110	21921300	1	-	0	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21921110	21921300	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21921301	21921459	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21921460	21921602	0.99	-	2	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21921460	21921602	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	intron	21921603	21921916	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	CDS	21921917	21922319	0.99	-	0	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	exon	21921917	21922319	.	-	.	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
Ledus.S1	AUGUSTUS	start_codon	21922317	21922319	.	-	0	transcript_id "Ledus.S1G256200.t1"; gene_id "Ledus.S1G256200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1350.t1 is derived from g8211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9412804	9415323	.	+	.	Ledus.S2G123200
Ledus.S2	AUGUSTUS	transcript	9412832	9415323	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	start_codon	9412832	9412834	.	+	0	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9412832	9412854	1	+	0	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9412832	9412854	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9412855	9412923	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9412924	9413008	0.99	+	1	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9412924	9413008	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9413009	9413112	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9413113	9413295	0.98	+	0	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9413113	9413295	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9413296	9413501	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9413502	9413618	1	+	0	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9413502	9413618	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9413619	9413710	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9413711	9413851	1	+	0	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9413711	9413851	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9413852	9413980	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9413981	9414091	1	+	0	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9413981	9414091	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9414092	9414182	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9414183	9414326	1	+	0	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9414183	9414326	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9414327	9414411	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9414412	9414452	1	+	0	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9414412	9414452	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9414453	9414576	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9414577	9414656	1	+	1	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9414577	9414656	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9414657	9414781	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9414782	9414877	1	+	2	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9414782	9414877	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9414878	9414994	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9414995	9415323	1	+	2	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9414995	9415323	.	+	.	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	stop_codon	9415324	9415326	.	+	0	transcript_id "Ledus.S2G123200.t1"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	transcript	9412804	9415323	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	start_codon	9412804	9412806	.	+	0	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9412804	9412854	0.48	+	0	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9412804	9412854	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9412855	9412931	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9412932	9413008	0.5	+	0	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9412932	9413008	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9413009	9413099	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9413100	9413295	0.29	+	1	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9413100	9413295	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9413296	9413501	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9413502	9413618	1	+	0	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9413502	9413618	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9413619	9413710	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9413711	9413851	1	+	0	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9413711	9413851	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9413852	9413980	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9413981	9414091	1	+	0	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9413981	9414091	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9414092	9414182	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9414183	9414326	1	+	0	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9414183	9414326	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9414327	9414411	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9414412	9414452	1	+	0	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9414412	9414452	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9414453	9414576	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9414577	9414656	1	+	1	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9414577	9414656	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9414657	9414781	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9414782	9414877	1	+	2	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9414782	9414877	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	intron	9414878	9414994	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	CDS	9414995	9415323	1	+	2	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	exon	9414995	9415323	.	+	.	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
Ledus.S2	AUGUSTUS	stop_codon	9415324	9415326	.	+	0	transcript_id "Ledus.S2G123200.t2"; gene_id "Ledus.S2G123200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5517.t1 is derived from g2956.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24773238	24775010	.	+	.	Ledus.S1G293800
Ledus.S1	AUGUSTUS	transcript	24773238	24775010	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	start_codon	24773238	24773240	.	+	0	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	CDS	24773238	24773387	0.99	+	0	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	exon	24773238	24773387	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	intron	24773388	24773591	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	CDS	24773592	24773713	1	+	0	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	exon	24773592	24773713	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	intron	24773714	24773847	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	CDS	24773848	24773998	1	+	1	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	exon	24773848	24773998	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	intron	24773999	24774097	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	CDS	24774098	24774171	1	+	0	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	exon	24774098	24774171	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	intron	24774172	24774263	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	CDS	24774264	24774423	1	+	1	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	exon	24774264	24774423	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	intron	24774424	24774497	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	CDS	24774498	24774596	1	+	0	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	exon	24774498	24774596	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	intron	24774597	24774687	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	CDS	24774688	24774774	1	+	0	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	exon	24774688	24774774	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	intron	24774775	24774866	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	CDS	24774867	24775010	1	+	0	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	exon	24774867	24775010	.	+	.	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
Ledus.S1	AUGUSTUS	stop_codon	24775011	24775013	.	+	0	transcript_id "Ledus.S1G293800.t1"; gene_id "Ledus.S1G293800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11462.t1 is derived from g5080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4466831	4471592	.	+	.	Ledus.S4G061800
Ledus.S4	AUGUSTUS	transcript	4466831	4471592	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	start_codon	4466831	4466833	.	+	0	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	CDS	4466831	4467031	0.5	+	0	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	exon	4466831	4467031	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	intron	4467032	4467139	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	CDS	4467140	4467261	0.96	+	0	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	exon	4467140	4467261	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	intron	4467262	4467357	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	CDS	4467358	4467811	0.9	+	1	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	exon	4467358	4467811	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	intron	4467812	4467922	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	CDS	4467923	4468038	0.96	+	0	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	exon	4467923	4468038	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	intron	4468039	4468131	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	CDS	4468132	4468993	1	+	1	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	exon	4468132	4468993	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	intron	4468994	4469093	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	CDS	4469094	4469570	1	+	0	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	exon	4469094	4469570	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	intron	4469571	4469648	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	CDS	4469649	4469837	1	+	0	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	exon	4469649	4469837	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	intron	4469838	4469955	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	CDS	4469956	4470186	0.99	+	0	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	exon	4469956	4470186	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	intron	4470187	4470309	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	CDS	4470310	4470709	0.82	+	0	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	exon	4470310	4470709	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	intron	4470710	4470810	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	CDS	4470811	4470994	0.85	+	2	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	exon	4470811	4470994	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	intron	4470995	4471114	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	CDS	4471115	4471592	0.94	+	1	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	exon	4471115	4471592	.	+	.	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
Ledus.S4	AUGUSTUS	stop_codon	4471593	4471595	.	+	0	transcript_id "Ledus.S4G061800.t1"; gene_id "Ledus.S4G061800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7402.t1 is derived from g12073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2099827	2104885	.	-	.	Ledus.S5G018000
Ledus.S5	AUGUSTUS	transcript	2099827	2104885	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	stop_codon	2099824	2099826	.	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2099827	2099866	0.72	-	1	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2099827	2099866	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2099867	2100102	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2100103	2100117	0.71	-	1	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2100103	2100117	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2100118	2100347	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2100348	2100421	0.72	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2100348	2100421	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2100422	2100502	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2100503	2100591	1	-	2	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2100503	2100591	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2100592	2100715	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2100716	2100821	1	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2100716	2100821	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2100822	2100926	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2100927	2101049	1	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2100927	2101049	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2101050	2101129	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2101130	2101214	1	-	1	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2101130	2101214	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2101215	2101356	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2101357	2101466	1	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2101357	2101466	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2101467	2101570	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2101571	2101771	1	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2101571	2101771	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2101772	2101860	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2101861	2102235	0.38	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2101861	2102235	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2102236	2102360	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2102361	2102419	0.45	-	2	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2102361	2102419	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2102420	2102560	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2102561	2102686	1	-	2	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2102561	2102686	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2102687	2102836	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2102837	2102999	1	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2102837	2102999	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2103000	2103117	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2103118	2103273	0.88	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2103118	2103273	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2103274	2103387	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2103388	2103512	1	-	2	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2103388	2103512	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2103513	2103612	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2103613	2103735	1	-	2	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2103613	2103735	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2103736	2103814	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2103815	2103962	1	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2103815	2103962	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2103963	2104081	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2104082	2104170	1	-	2	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2104082	2104170	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2104171	2104293	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2104294	2104633	0.99	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2104294	2104633	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	intron	2104634	2104753	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	CDS	2104754	2104885	0.88	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	exon	2104754	2104885	.	-	.	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
Ledus.S5	AUGUSTUS	start_codon	2104883	2104885	.	-	0	transcript_id "Ledus.S5G018000.t1"; gene_id "Ledus.S5G018000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4439.t1 is derived from g1875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17124069	17124572	.	+	.	Ledus.S1G186000
Ledus.S1	AUGUSTUS	transcript	17124069	17124572	.	+	.	transcript_id "Ledus.S1G186000.t1"; gene_id "Ledus.S1G186000"
Ledus.S1	AUGUSTUS	start_codon	17124069	17124071	.	+	0	transcript_id "Ledus.S1G186000.t1"; gene_id "Ledus.S1G186000"
Ledus.S1	AUGUSTUS	CDS	17124069	17124572	0.29	+	0	transcript_id "Ledus.S1G186000.t1"; gene_id "Ledus.S1G186000"
Ledus.S1	AUGUSTUS	exon	17124069	17124572	.	+	.	transcript_id "Ledus.S1G186000.t1"; gene_id "Ledus.S1G186000"
Ledus.S1	AUGUSTUS	stop_codon	17124573	17124575	.	+	0	transcript_id "Ledus.S1G186000.t1"; gene_id "Ledus.S1G186000"
# This transcript jg1702.t2 is derived from g8563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1703.t1 is derived from g8564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11981152	11982529	.	-	.	Ledus.S2G158500
Ledus.S2	AUGUSTUS	transcript	11981152	11982529	.	-	.	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	stop_codon	11981149	11981151	.	-	0	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	CDS	11981152	11981453	0.53	-	2	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	exon	11981152	11981453	.	-	.	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	intron	11981454	11981603	.	-	.	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	CDS	11981604	11981894	0.47	-	2	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	exon	11981604	11981894	.	-	.	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	intron	11981895	11982071	.	-	.	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	CDS	11982072	11982294	0.86	-	0	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	exon	11982072	11982294	.	-	.	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	intron	11982295	11982370	.	-	.	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	CDS	11982371	11982529	0.87	-	0	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	exon	11982371	11982529	.	-	.	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
Ledus.S2	AUGUSTUS	start_codon	11982527	11982529	.	-	0	transcript_id "Ledus.S2G158500.t1"; gene_id "Ledus.S2G158500"
# This transcript jg12103.t2 is derived from g5722.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12104.t1 is derived from g5723.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9516653	9517670	.	+	.	Ledus.S4G126000
Ledus.S4	AUGUSTUS	transcript	9516653	9517670	.	+	.	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	start_codon	9516653	9516655	.	+	0	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	CDS	9516653	9516725	0.9	+	0	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	exon	9516653	9516725	.	+	.	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	intron	9516726	9516999	.	+	.	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	CDS	9517000	9517090	0.9	+	2	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	exon	9517000	9517090	.	+	.	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	intron	9517091	9517253	.	+	.	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	CDS	9517254	9517258	0.97	+	1	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	exon	9517254	9517258	.	+	.	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	intron	9517259	9517405	.	+	.	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	CDS	9517406	9517493	1	+	2	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	exon	9517406	9517493	.	+	.	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	intron	9517494	9517651	.	+	.	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	CDS	9517652	9517670	1	+	1	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	exon	9517652	9517670	.	+	.	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	stop_codon	9517671	9517673	.	+	0	transcript_id "Ledus.S4G126000.t1"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	transcript	9516718	9517670	.	+	.	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	start_codon	9516718	9516720	.	+	0	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	CDS	9516718	9516725	0.75	+	0	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	exon	9516718	9516725	.	+	.	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	intron	9516726	9516962	.	+	.	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	CDS	9516963	9517036	0.59	+	1	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	exon	9516963	9517036	.	+	.	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	intron	9517037	9517246	.	+	.	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	CDS	9517247	9517258	0.76	+	2	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	exon	9517247	9517258	.	+	.	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	intron	9517259	9517405	.	+	.	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	CDS	9517406	9517493	0.92	+	2	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	exon	9517406	9517493	.	+	.	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	intron	9517494	9517651	.	+	.	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	CDS	9517652	9517670	0.93	+	1	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	exon	9517652	9517670	.	+	.	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
Ledus.S4	AUGUSTUS	stop_codon	9517671	9517673	.	+	0	transcript_id "Ledus.S4G126000.t2"; gene_id "Ledus.S4G126000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10159.t1 is derived from g11189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13391793	13397186	.	+	.	Ledus.S3G163600
Ledus.S3	AUGUSTUS	transcript	13391793	13397186	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	start_codon	13391793	13391795	.	+	0	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	CDS	13391793	13391909	0.88	+	0	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	exon	13391793	13391909	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	intron	13391910	13392244	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	CDS	13392245	13392355	0.97	+	0	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	exon	13392245	13392355	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	intron	13392356	13392802	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	CDS	13392803	13392838	0.85	+	0	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	exon	13392803	13392838	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	intron	13392839	13393146	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	CDS	13393147	13393221	0.98	+	0	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	exon	13393147	13393221	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	intron	13393222	13393593	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	CDS	13393594	13394963	1	+	0	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	exon	13393594	13394963	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	intron	13394964	13395171	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	CDS	13395172	13395339	0.97	+	1	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	exon	13395172	13395339	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	intron	13395340	13395454	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	CDS	13395455	13395620	1	+	1	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	exon	13395455	13395620	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	intron	13395621	13395812	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	CDS	13395813	13395923	1	+	0	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	exon	13395813	13395923	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	intron	13395924	13396017	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	CDS	13396018	13396205	1	+	0	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	exon	13396018	13396205	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	intron	13396206	13396355	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	CDS	13396356	13396507	1	+	1	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	exon	13396356	13396507	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	intron	13396508	13396589	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	CDS	13396590	13396764	1	+	2	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	exon	13396590	13396764	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	intron	13396765	13396894	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	CDS	13396895	13397186	0.92	+	1	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	exon	13396895	13397186	.	+	.	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
Ledus.S3	AUGUSTUS	stop_codon	13397187	13397189	.	+	0	transcript_id "Ledus.S3G163600.t1"; gene_id "Ledus.S3G163600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1364.t1 is derived from g8225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9470044	9471994	.	+	.	Ledus.S2G124600
Ledus.S2	AUGUSTUS	transcript	9470044	9471994	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	start_codon	9470044	9470046	.	+	0	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	CDS	9470044	9470068	0.76	+	0	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	exon	9470044	9470068	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	intron	9470069	9470162	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	CDS	9470163	9470176	0.95	+	2	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	exon	9470163	9470176	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	intron	9470177	9470333	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	CDS	9470334	9470484	1	+	0	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	exon	9470334	9470484	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	intron	9470485	9470647	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	CDS	9470648	9470715	1	+	2	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	exon	9470648	9470715	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	intron	9470716	9470810	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	CDS	9470811	9471047	1	+	0	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	exon	9470811	9471047	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	intron	9471048	9471147	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	CDS	9471148	9471438	0.97	+	0	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	exon	9471148	9471438	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	intron	9471439	9471521	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	CDS	9471522	9471709	1	+	0	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	exon	9471522	9471709	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	intron	9471710	9471804	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	CDS	9471805	9471994	1	+	1	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	exon	9471805	9471994	.	+	.	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
Ledus.S2	AUGUSTUS	stop_codon	9471995	9471997	.	+	0	transcript_id "Ledus.S2G124600.t1"; gene_id "Ledus.S2G124600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8792.t1 is derived from g9822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2009202	2009438	.	+	.	Ledus.S3G026900
Ledus.S3	AUGUSTUS	transcript	2009202	2009438	.	+	.	transcript_id "Ledus.S3G026900.t1"; gene_id "Ledus.S3G026900"
Ledus.S3	AUGUSTUS	start_codon	2009202	2009204	.	+	0	transcript_id "Ledus.S3G026900.t1"; gene_id "Ledus.S3G026900"
Ledus.S3	AUGUSTUS	CDS	2009202	2009438	0.99	+	0	transcript_id "Ledus.S3G026900.t1"; gene_id "Ledus.S3G026900"
Ledus.S3	AUGUSTUS	exon	2009202	2009438	.	+	.	transcript_id "Ledus.S3G026900.t1"; gene_id "Ledus.S3G026900"
Ledus.S3	AUGUSTUS	stop_codon	2009439	2009441	.	+	0	transcript_id "Ledus.S3G026900.t1"; gene_id "Ledus.S3G026900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3000.t1 is derived from g435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5219285	5220547	.	-	.	Ledus.S1G042100
Ledus.S1	AUGUSTUS	transcript	5219285	5220547	.	-	.	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	stop_codon	5219282	5219284	.	-	0	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	CDS	5219285	5219776	0.86	-	0	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	exon	5219285	5219776	.	-	.	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	intron	5219777	5219877	.	-	.	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	CDS	5219878	5220240	0.98	-	0	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	exon	5219878	5220240	.	-	.	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	intron	5220241	5220352	.	-	.	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	CDS	5220353	5220409	0.86	-	0	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	exon	5220353	5220409	.	-	.	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	intron	5220410	5220502	.	-	.	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	CDS	5220503	5220547	1	-	0	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	exon	5220503	5220547	.	-	.	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
Ledus.S1	AUGUSTUS	start_codon	5220545	5220547	.	-	0	transcript_id "Ledus.S1G042100.t1"; gene_id "Ledus.S1G042100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4002.t1 is derived from g1438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14014407	14015950	.	-	.	Ledus.S1G142300
Ledus.S1	AUGUSTUS	transcript	14014407	14015950	.	-	.	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	stop_codon	14014404	14014406	.	-	0	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	CDS	14014407	14014783	1	-	2	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	exon	14014407	14014783	.	-	.	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	intron	14014784	14014881	.	-	.	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	CDS	14014882	14014978	1	-	0	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	exon	14014882	14014978	.	-	.	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	intron	14014979	14015147	.	-	.	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	CDS	14015148	14015239	1	-	2	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	exon	14015148	14015239	.	-	.	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	intron	14015240	14015371	.	-	.	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	CDS	14015372	14015492	1	-	0	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	exon	14015372	14015492	.	-	.	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	intron	14015493	14015764	.	-	.	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	CDS	14015765	14015950	0.95	-	0	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	exon	14015765	14015950	.	-	.	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
Ledus.S1	AUGUSTUS	start_codon	14015948	14015950	.	-	0	transcript_id "Ledus.S1G142300.t1"; gene_id "Ledus.S1G142300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg44.t1 is derived from g9457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	52962	53768	.	+	.	Ledus.C8G000400
Ledus.C8	AUGUSTUS	transcript	52962	53768	.	+	.	transcript_id "Ledus.C8G000400.t1"; gene_id "Ledus.C8G000400"
Ledus.C8	AUGUSTUS	start_codon	52962	52964	.	+	0	transcript_id "Ledus.C8G000400.t1"; gene_id "Ledus.C8G000400"
Ledus.C8	AUGUSTUS	CDS	52962	53145	0.46	+	0	transcript_id "Ledus.C8G000400.t1"; gene_id "Ledus.C8G000400"
Ledus.C8	AUGUSTUS	exon	52962	53145	.	+	.	transcript_id "Ledus.C8G000400.t1"; gene_id "Ledus.C8G000400"
Ledus.C8	AUGUSTUS	intron	53146	53529	.	+	.	transcript_id "Ledus.C8G000400.t1"; gene_id "Ledus.C8G000400"
Ledus.C8	AUGUSTUS	CDS	53530	53768	0.95	+	2	transcript_id "Ledus.C8G000400.t1"; gene_id "Ledus.C8G000400"
Ledus.C8	AUGUSTUS	exon	53530	53768	.	+	.	transcript_id "Ledus.C8G000400.t1"; gene_id "Ledus.C8G000400"
Ledus.C8	AUGUSTUS	stop_codon	53769	53771	.	+	0	transcript_id "Ledus.C8G000400.t1"; gene_id "Ledus.C8G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13013.t1 is derived from g6823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2945798	2946388	.	+	.	Ledus.S6G007500
Ledus.S6	AUGUSTUS	transcript	2945798	2946388	.	+	.	transcript_id "Ledus.S6G007500.t1"; gene_id "Ledus.S6G007500"
Ledus.S6	AUGUSTUS	start_codon	2945798	2945800	.	+	0	transcript_id "Ledus.S6G007500.t1"; gene_id "Ledus.S6G007500"
Ledus.S6	AUGUSTUS	CDS	2945798	2945893	0.66	+	0	transcript_id "Ledus.S6G007500.t1"; gene_id "Ledus.S6G007500"
Ledus.S6	AUGUSTUS	exon	2945798	2945893	.	+	.	transcript_id "Ledus.S6G007500.t1"; gene_id "Ledus.S6G007500"
Ledus.S6	AUGUSTUS	intron	2945894	2946124	.	+	.	transcript_id "Ledus.S6G007500.t1"; gene_id "Ledus.S6G007500"
Ledus.S6	AUGUSTUS	CDS	2946125	2946388	0.67	+	0	transcript_id "Ledus.S6G007500.t1"; gene_id "Ledus.S6G007500"
Ledus.S6	AUGUSTUS	exon	2946125	2946388	.	+	.	transcript_id "Ledus.S6G007500.t1"; gene_id "Ledus.S6G007500"
Ledus.S6	AUGUSTUS	stop_codon	2946389	2946391	.	+	0	transcript_id "Ledus.S6G007500.t1"; gene_id "Ledus.S6G007500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6290.t1 is derived from g3733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30151631	30152476	.	-	.	Ledus.S1G371100
Ledus.S1	AUGUSTUS	transcript	30151631	30152476	.	-	.	transcript_id "Ledus.S1G371100.t1"; gene_id "Ledus.S1G371100"
Ledus.S1	AUGUSTUS	stop_codon	30151628	30151630	.	-	0	transcript_id "Ledus.S1G371100.t1"; gene_id "Ledus.S1G371100"
Ledus.S1	AUGUSTUS	CDS	30151631	30151659	1	-	2	transcript_id "Ledus.S1G371100.t1"; gene_id "Ledus.S1G371100"
Ledus.S1	AUGUSTUS	exon	30151631	30151659	.	-	.	transcript_id "Ledus.S1G371100.t1"; gene_id "Ledus.S1G371100"
Ledus.S1	AUGUSTUS	intron	30151660	30151806	.	-	.	transcript_id "Ledus.S1G371100.t1"; gene_id "Ledus.S1G371100"
Ledus.S1	AUGUSTUS	CDS	30151807	30152217	0.98	-	2	transcript_id "Ledus.S1G371100.t1"; gene_id "Ledus.S1G371100"
Ledus.S1	AUGUSTUS	exon	30151807	30152217	.	-	.	transcript_id "Ledus.S1G371100.t1"; gene_id "Ledus.S1G371100"
Ledus.S1	AUGUSTUS	intron	30152218	30152388	.	-	.	transcript_id "Ledus.S1G371100.t1"; gene_id "Ledus.S1G371100"
Ledus.S1	AUGUSTUS	CDS	30152389	30152476	0.97	-	0	transcript_id "Ledus.S1G371100.t1"; gene_id "Ledus.S1G371100"
Ledus.S1	AUGUSTUS	exon	30152389	30152476	.	-	.	transcript_id "Ledus.S1G371100.t1"; gene_id "Ledus.S1G371100"
Ledus.S1	AUGUSTUS	start_codon	30152474	30152476	.	-	0	transcript_id "Ledus.S1G371100.t1"; gene_id "Ledus.S1G371100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13094.t1 is derived from g6904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5430893	5432050	.	-	.	Ledus.S6G015600
Ledus.S6	AUGUSTUS	transcript	5430893	5432050	.	-	.	transcript_id "Ledus.S6G015600.t1"; gene_id "Ledus.S6G015600"
Ledus.S6	AUGUSTUS	stop_codon	5430890	5430892	.	-	0	transcript_id "Ledus.S6G015600.t1"; gene_id "Ledus.S6G015600"
Ledus.S6	AUGUSTUS	CDS	5430893	5431919	0.69	-	1	transcript_id "Ledus.S6G015600.t1"; gene_id "Ledus.S6G015600"
Ledus.S6	AUGUSTUS	exon	5430893	5431919	.	-	.	transcript_id "Ledus.S6G015600.t1"; gene_id "Ledus.S6G015600"
Ledus.S6	AUGUSTUS	intron	5431920	5432045	.	-	.	transcript_id "Ledus.S6G015600.t1"; gene_id "Ledus.S6G015600"
Ledus.S6	AUGUSTUS	CDS	5432046	5432050	0.92	-	0	transcript_id "Ledus.S6G015600.t1"; gene_id "Ledus.S6G015600"
Ledus.S6	AUGUSTUS	exon	5432046	5432050	.	-	.	transcript_id "Ledus.S6G015600.t1"; gene_id "Ledus.S6G015600"
Ledus.S6	AUGUSTUS	start_codon	5432048	5432050	.	-	0	transcript_id "Ledus.S6G015600.t1"; gene_id "Ledus.S6G015600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11343.t1 is derived from g4961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3699442	3699684	.	-	.	Ledus.S4G049900
Ledus.S4	AUGUSTUS	transcript	3699442	3699684	.	-	.	transcript_id "Ledus.S4G049900.t1"; gene_id "Ledus.S4G049900"
Ledus.S4	AUGUSTUS	stop_codon	3699439	3699441	.	-	0	transcript_id "Ledus.S4G049900.t1"; gene_id "Ledus.S4G049900"
Ledus.S4	AUGUSTUS	CDS	3699442	3699684	0.72	-	0	transcript_id "Ledus.S4G049900.t1"; gene_id "Ledus.S4G049900"
Ledus.S4	AUGUSTUS	exon	3699442	3699684	.	-	.	transcript_id "Ledus.S4G049900.t1"; gene_id "Ledus.S4G049900"
Ledus.S4	AUGUSTUS	start_codon	3699682	3699684	.	-	0	transcript_id "Ledus.S4G049900.t1"; gene_id "Ledus.S4G049900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg468.t1 is derived from g7329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2741421	2742489	.	+	.	Ledus.S2G035000
Ledus.S2	AUGUSTUS	transcript	2741421	2742489	.	+	.	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	start_codon	2741421	2741423	.	+	0	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	CDS	2741421	2741820	0.66	+	0	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	exon	2741421	2741820	.	+	.	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	intron	2741821	2741902	.	+	.	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	CDS	2741903	2742057	1	+	2	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	exon	2741903	2742057	.	+	.	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	intron	2742058	2742145	.	+	.	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	CDS	2742146	2742212	0.99	+	0	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	exon	2742146	2742212	.	+	.	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	intron	2742213	2742329	.	+	.	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	CDS	2742330	2742377	0.91	+	2	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	exon	2742330	2742377	.	+	.	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	intron	2742378	2742451	.	+	.	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	CDS	2742452	2742489	0.98	+	2	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	exon	2742452	2742489	.	+	.	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
Ledus.S2	AUGUSTUS	stop_codon	2742490	2742492	.	+	0	transcript_id "Ledus.S2G035000.t1"; gene_id "Ledus.S2G035000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10156.t1 is derived from g11186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13370946	13371605	.	+	.	Ledus.S3G163300
Ledus.S3	AUGUSTUS	transcript	13370946	13371605	.	+	.	transcript_id "Ledus.S3G163300.t1"; gene_id "Ledus.S3G163300"
Ledus.S3	AUGUSTUS	start_codon	13370946	13370948	.	+	0	transcript_id "Ledus.S3G163300.t1"; gene_id "Ledus.S3G163300"
Ledus.S3	AUGUSTUS	CDS	13370946	13371605	0.99	+	0	transcript_id "Ledus.S3G163300.t1"; gene_id "Ledus.S3G163300"
Ledus.S3	AUGUSTUS	exon	13370946	13371605	.	+	.	transcript_id "Ledus.S3G163300.t1"; gene_id "Ledus.S3G163300"
Ledus.S3	AUGUSTUS	stop_codon	13371606	13371608	.	+	0	transcript_id "Ledus.S3G163300.t1"; gene_id "Ledus.S3G163300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7598.t1 is derived from g12269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4291084	4292616	.	-	.	Ledus.S5G037600
Ledus.S5	AUGUSTUS	transcript	4291084	4292616	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	stop_codon	4291081	4291083	.	-	0	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	CDS	4291084	4291256	1	-	2	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	exon	4291084	4291256	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	intron	4291257	4291346	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	CDS	4291347	4291426	1	-	1	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	exon	4291347	4291426	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	intron	4291427	4291574	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	CDS	4291575	4291655	1	-	1	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	exon	4291575	4291655	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	intron	4291656	4291819	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	CDS	4291820	4291893	1	-	0	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	exon	4291820	4291893	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	intron	4291894	4291986	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	CDS	4291987	4292101	1	-	1	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	exon	4291987	4292101	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	intron	4292102	4292191	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	CDS	4292192	4292407	1	-	1	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	exon	4292192	4292407	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	intron	4292408	4292521	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	CDS	4292522	4292616	0.97	-	0	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	exon	4292522	4292616	.	-	.	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
Ledus.S5	AUGUSTUS	start_codon	4292614	4292616	.	-	0	transcript_id "Ledus.S5G037600.t1"; gene_id "Ledus.S5G037600"
# This transcript jg7554.t2 is derived from g12225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7555.t1 is derived from g12226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4038718	4039476	.	-	.	Ledus.S5G033300
Ledus.S5	AUGUSTUS	transcript	4038718	4039476	.	-	.	transcript_id "Ledus.S5G033300.t1"; gene_id "Ledus.S5G033300"
Ledus.S5	AUGUSTUS	stop_codon	4038715	4038717	.	-	0	transcript_id "Ledus.S5G033300.t1"; gene_id "Ledus.S5G033300"
Ledus.S5	AUGUSTUS	CDS	4038718	4039476	0.68	-	0	transcript_id "Ledus.S5G033300.t1"; gene_id "Ledus.S5G033300"
Ledus.S5	AUGUSTUS	exon	4038718	4039476	.	-	.	transcript_id "Ledus.S5G033300.t1"; gene_id "Ledus.S5G033300"
Ledus.S5	AUGUSTUS	start_codon	4039474	4039476	.	-	0	transcript_id "Ledus.S5G033300.t1"; gene_id "Ledus.S5G033300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg440.t1 is derived from g7301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2615900	2616169	.	-	.	Ledus.S2G032200
Ledus.S2	AUGUSTUS	transcript	2615900	2616169	.	-	.	transcript_id "Ledus.S2G032200.t1"; gene_id "Ledus.S2G032200"
Ledus.S2	AUGUSTUS	stop_codon	2615897	2615899	.	-	0	transcript_id "Ledus.S2G032200.t1"; gene_id "Ledus.S2G032200"
Ledus.S2	AUGUSTUS	CDS	2615900	2616169	0.86	-	0	transcript_id "Ledus.S2G032200.t1"; gene_id "Ledus.S2G032200"
Ledus.S2	AUGUSTUS	exon	2615900	2616169	.	-	.	transcript_id "Ledus.S2G032200.t1"; gene_id "Ledus.S2G032200"
Ledus.S2	AUGUSTUS	start_codon	2616167	2616169	.	-	0	transcript_id "Ledus.S2G032200.t1"; gene_id "Ledus.S2G032200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg475.t1 is derived from g7336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2773692	2775438	.	-	.	Ledus.S2G035700
Ledus.S2	AUGUSTUS	transcript	2773692	2775438	.	-	.	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	stop_codon	2773689	2773691	.	-	0	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	CDS	2773692	2773952	1	-	0	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	exon	2773692	2773952	.	-	.	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	intron	2773953	2774044	.	-	.	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	CDS	2774045	2774143	1	-	0	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	exon	2774045	2774143	.	-	.	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	intron	2774144	2774219	.	-	.	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	CDS	2774220	2774547	1	-	1	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	exon	2774220	2774547	.	-	.	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	intron	2774548	2774661	.	-	.	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	CDS	2774662	2774726	1	-	0	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	exon	2774662	2774726	.	-	.	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	intron	2774727	2774931	.	-	.	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	CDS	2774932	2775438	0.93	-	0	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	exon	2774932	2775438	.	-	.	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
Ledus.S2	AUGUSTUS	start_codon	2775436	2775438	.	-	0	transcript_id "Ledus.S2G035700.t1"; gene_id "Ledus.S2G035700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8515.t1 is derived from g13187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12408331	12409593	.	+	.	Ledus.S5G129300
Ledus.S5	AUGUSTUS	transcript	12408331	12409593	.	+	.	transcript_id "Ledus.S5G129300.t1"; gene_id "Ledus.S5G129300"
Ledus.S5	AUGUSTUS	start_codon	12408331	12408333	.	+	0	transcript_id "Ledus.S5G129300.t1"; gene_id "Ledus.S5G129300"
Ledus.S5	AUGUSTUS	CDS	12408331	12409593	0.99	+	0	transcript_id "Ledus.S5G129300.t1"; gene_id "Ledus.S5G129300"
Ledus.S5	AUGUSTUS	exon	12408331	12409593	.	+	.	transcript_id "Ledus.S5G129300.t1"; gene_id "Ledus.S5G129300"
Ledus.S5	AUGUSTUS	stop_codon	12409594	12409596	.	+	0	transcript_id "Ledus.S5G129300.t1"; gene_id "Ledus.S5G129300"
Ledus.S5	AUGUSTUS	transcript	12409246	12409593	.	+	.	transcript_id "Ledus.S5G129300.t2"; gene_id "Ledus.S5G129300"
Ledus.S5	AUGUSTUS	start_codon	12409246	12409248	.	+	0	transcript_id "Ledus.S5G129300.t2"; gene_id "Ledus.S5G129300"
Ledus.S5	AUGUSTUS	CDS	12409246	12409593	0.98	+	0	transcript_id "Ledus.S5G129300.t2"; gene_id "Ledus.S5G129300"
Ledus.S5	AUGUSTUS	exon	12409246	12409593	.	+	.	transcript_id "Ledus.S5G129300.t2"; gene_id "Ledus.S5G129300"
Ledus.S5	AUGUSTUS	stop_codon	12409594	12409596	.	+	0	transcript_id "Ledus.S5G129300.t2"; gene_id "Ledus.S5G129300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1721.t1 is derived from g8582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12132737	12135746	.	+	.	Ledus.S2G160300
Ledus.S2	AUGUSTUS	transcript	12132737	12135746	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	start_codon	12132737	12132739	.	+	0	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	CDS	12132737	12132792	0.41	+	0	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	exon	12132737	12132792	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	intron	12132793	12132904	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	CDS	12132905	12132954	0.82	+	1	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	exon	12132905	12132954	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	intron	12132955	12133244	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	CDS	12133245	12133314	1	+	2	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	exon	12133245	12133314	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	intron	12133315	12133408	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	CDS	12133409	12133431	0.83	+	1	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	exon	12133409	12133431	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	intron	12133432	12133508	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	CDS	12133509	12133552	0.75	+	2	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	exon	12133509	12133552	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	intron	12133553	12133674	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	CDS	12133675	12133978	1	+	0	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	exon	12133675	12133978	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	intron	12133979	12134082	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	CDS	12134083	12134354	0.88	+	2	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	exon	12134083	12134354	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	intron	12134355	12134479	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	CDS	12134480	12134663	1	+	0	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	exon	12134480	12134663	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	intron	12134664	12134759	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	CDS	12134760	12134881	1	+	2	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	exon	12134760	12134881	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	intron	12134882	12135017	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	CDS	12135018	12135080	1	+	0	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	exon	12135018	12135080	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	intron	12135081	12135239	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	CDS	12135240	12135306	1	+	0	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	exon	12135240	12135306	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	intron	12135307	12135396	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	CDS	12135397	12135746	0.93	+	2	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	exon	12135397	12135746	.	+	.	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
Ledus.S2	AUGUSTUS	stop_codon	12135747	12135749	.	+	0	transcript_id "Ledus.S2G160300.t1"; gene_id "Ledus.S2G160300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3285.t1 is derived from g720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7244530	7248894	.	+	.	Ledus.S1G070600
Ledus.S1	AUGUSTUS	transcript	7244530	7248894	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	start_codon	7244530	7244532	.	+	0	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7244530	7244751	0.62	+	0	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7244530	7244751	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7244752	7244837	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7244838	7244911	1	+	0	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7244838	7244911	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7244912	7245058	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7245059	7245139	1	+	1	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7245059	7245139	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7245140	7245229	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7245230	7245317	0.68	+	1	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7245230	7245317	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7245318	7245419	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7245420	7245520	0.93	+	0	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7245420	7245520	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7245521	7245623	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7245624	7245711	0.99	+	1	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7245624	7245711	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7245712	7245791	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7245792	7246239	1	+	0	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7245792	7246239	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7246240	7246396	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7246397	7246612	0.95	+	2	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7246397	7246612	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7246613	7247080	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7247081	7247113	0.89	+	2	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7247081	7247113	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7247114	7247201	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7247202	7247498	0.82	+	2	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7247202	7247498	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7247499	7247789	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7247790	7247908	1	+	2	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7247790	7247908	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7247909	7248005	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7248006	7248131	1	+	0	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7248006	7248131	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7248132	7248227	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7248228	7248358	0.51	+	0	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7248228	7248358	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7248359	7248474	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7248475	7248622	0.5	+	1	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7248475	7248622	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7248623	7248828	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7248829	7248894	0.94	+	0	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7248829	7248894	.	+	.	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	stop_codon	7248895	7248897	.	+	0	transcript_id "Ledus.S1G070600.t1"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	transcript	7244530	7248894	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	start_codon	7244530	7244532	.	+	0	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7244530	7244751	0.63	+	0	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7244530	7244751	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7244752	7244837	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7244838	7244911	1	+	0	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7244838	7244911	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7244912	7245058	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7245059	7245139	1	+	1	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7245059	7245139	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7245140	7245229	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7245230	7245317	0.71	+	1	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7245230	7245317	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7245318	7245419	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7245420	7245520	0.97	+	0	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7245420	7245520	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7245521	7245623	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7245624	7245711	0.99	+	1	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7245624	7245711	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7245712	7245791	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7245792	7246239	1	+	0	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7245792	7246239	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7246240	7246396	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7246397	7246612	0.96	+	2	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7246397	7246612	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7246613	7247080	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7247081	7247113	0.96	+	2	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7247081	7247113	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7247114	7247201	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7247202	7247266	0.64	+	2	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7247202	7247266	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7247267	7247385	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7247386	7247498	0.81	+	0	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7247386	7247498	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7247499	7247802	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7247803	7247908	0.99	+	1	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7247803	7247908	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7247909	7248005	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7248006	7248131	1	+	0	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7248006	7248131	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7248132	7248227	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7248228	7248358	0.46	+	0	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7248228	7248358	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7248359	7248474	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7248475	7248622	0.45	+	1	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7248475	7248622	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	intron	7248623	7248828	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	CDS	7248829	7248894	0.94	+	0	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	exon	7248829	7248894	.	+	.	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
Ledus.S1	AUGUSTUS	stop_codon	7248895	7248897	.	+	0	transcript_id "Ledus.S1G070600.t2"; gene_id "Ledus.S1G070600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9439.t1 is derived from g10469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6748349	6749693	.	-	.	Ledus.S3G091600
Ledus.S3	AUGUSTUS	transcript	6748349	6749693	.	-	.	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	stop_codon	6748346	6748348	.	-	0	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	CDS	6748349	6748811	0.89	-	1	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	exon	6748349	6748811	.	-	.	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	intron	6748812	6748939	.	-	.	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	CDS	6748940	6749335	0.99	-	1	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	exon	6748940	6749335	.	-	.	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	intron	6749336	6749428	.	-	.	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	CDS	6749429	6749571	0.96	-	0	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	exon	6749429	6749571	.	-	.	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	intron	6749572	6749666	.	-	.	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	CDS	6749667	6749693	0.68	-	0	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	exon	6749667	6749693	.	-	.	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
Ledus.S3	AUGUSTUS	start_codon	6749691	6749693	.	-	0	transcript_id "Ledus.S3G091600.t1"; gene_id "Ledus.S3G091600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8060.t1 is derived from g12731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8998987	8999726	.	-	.	Ledus.S5G083800
Ledus.S5	AUGUSTUS	transcript	8998987	8999726	.	-	.	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	stop_codon	8998984	8998986	.	-	0	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	CDS	8998987	8999066	1	-	2	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	exon	8998987	8999066	.	-	.	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	intron	8999067	8999156	.	-	.	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	CDS	8999157	8999361	1	-	0	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	exon	8999157	8999361	.	-	.	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	intron	8999362	8999445	.	-	.	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	CDS	8999446	8999567	1	-	2	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	exon	8999446	8999567	.	-	.	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	intron	8999568	8999659	.	-	.	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	CDS	8999660	8999726	0.99	-	0	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	exon	8999660	8999726	.	-	.	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
Ledus.S5	AUGUSTUS	start_codon	8999724	8999726	.	-	0	transcript_id "Ledus.S5G083800.t1"; gene_id "Ledus.S5G083800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6051.t1 is derived from g3494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28714340	28718181	.	-	.	Ledus.S1G347200
Ledus.S1	AUGUSTUS	transcript	28714340	28718181	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	stop_codon	28714337	28714339	.	-	0	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28714340	28714493	0.92	-	1	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28714340	28714493	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28714494	28714602	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28714603	28714667	0.94	-	0	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28714603	28714667	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28714668	28714755	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28714756	28714832	1	-	2	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28714756	28714832	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28714833	28714966	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28714967	28715042	0.98	-	0	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28714967	28715042	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28715043	28715160	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28715161	28715293	0.98	-	1	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28715161	28715293	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28715294	28715405	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28715406	28715447	1	-	1	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28715406	28715447	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28715448	28715637	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28715638	28715723	1	-	0	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28715638	28715723	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28715724	28715793	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28715794	28715853	1	-	0	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28715794	28715853	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28715854	28715935	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28715936	28716033	1	-	2	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28715936	28716033	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28716034	28716147	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28716148	28716205	1	-	0	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28716148	28716205	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28716206	28716318	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28716319	28716400	0.87	-	1	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28716319	28716400	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28716401	28716499	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28716500	28716559	0.99	-	1	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28716500	28716559	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28716560	28716660	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28716661	28716804	0.99	-	1	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28716661	28716804	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28716805	28716955	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28716956	28717042	1	-	1	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28716956	28717042	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28717043	28717231	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28717232	28717308	1	-	0	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28717232	28717308	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28717309	28717492	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28717493	28717576	1	-	0	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28717493	28717576	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	intron	28717577	28717668	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	CDS	28717669	28718181	0.45	-	0	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	exon	28717669	28718181	.	-	.	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
Ledus.S1	AUGUSTUS	start_codon	28718179	28718181	.	-	0	transcript_id "Ledus.S1G347200.t1"; gene_id "Ledus.S1G347200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6958.t1 is derived from g6489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	338493	338711	.	+	.	Ledus.C7G001900
Ledus.C7	AUGUSTUS	transcript	338493	338711	.	+	.	transcript_id "Ledus.C7G001900.t1"; gene_id "Ledus.C7G001900"
Ledus.C7	AUGUSTUS	start_codon	338493	338495	.	+	0	transcript_id "Ledus.C7G001900.t1"; gene_id "Ledus.C7G001900"
Ledus.C7	AUGUSTUS	CDS	338493	338711	0.37	+	0	transcript_id "Ledus.C7G001900.t1"; gene_id "Ledus.C7G001900"
Ledus.C7	AUGUSTUS	exon	338493	338711	.	+	.	transcript_id "Ledus.C7G001900.t1"; gene_id "Ledus.C7G001900"
Ledus.C7	AUGUSTUS	stop_codon	338712	338714	.	+	0	transcript_id "Ledus.C7G001900.t1"; gene_id "Ledus.C7G001900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7796.t1 is derived from g12467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6809236	6811325	.	+	.	Ledus.S5G057400
Ledus.S5	AUGUSTUS	transcript	6809236	6811325	.	+	.	transcript_id "Ledus.S5G057400.t1"; gene_id "Ledus.S5G057400"
Ledus.S5	AUGUSTUS	start_codon	6809236	6809238	.	+	0	transcript_id "Ledus.S5G057400.t1"; gene_id "Ledus.S5G057400"
Ledus.S5	AUGUSTUS	CDS	6809236	6809277	0.65	+	0	transcript_id "Ledus.S5G057400.t1"; gene_id "Ledus.S5G057400"
Ledus.S5	AUGUSTUS	exon	6809236	6809277	.	+	.	transcript_id "Ledus.S5G057400.t1"; gene_id "Ledus.S5G057400"
Ledus.S5	AUGUSTUS	intron	6809278	6809477	.	+	.	transcript_id "Ledus.S5G057400.t1"; gene_id "Ledus.S5G057400"
Ledus.S5	AUGUSTUS	CDS	6809478	6811325	0.76	+	0	transcript_id "Ledus.S5G057400.t1"; gene_id "Ledus.S5G057400"
Ledus.S5	AUGUSTUS	exon	6809478	6811325	.	+	.	transcript_id "Ledus.S5G057400.t1"; gene_id "Ledus.S5G057400"
Ledus.S5	AUGUSTUS	stop_codon	6811326	6811328	.	+	0	transcript_id "Ledus.S5G057400.t1"; gene_id "Ledus.S5G057400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6817.t1 is derived from g4261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34424951	34426579	.	+	.	Ledus.S1G423800
Ledus.S1	AUGUSTUS	transcript	34424951	34426579	.	+	.	transcript_id "Ledus.S1G423800.t1"; gene_id "Ledus.S1G423800"
Ledus.S1	AUGUSTUS	start_codon	34424951	34424953	.	+	0	transcript_id "Ledus.S1G423800.t1"; gene_id "Ledus.S1G423800"
Ledus.S1	AUGUSTUS	CDS	34424951	34425049	0.88	+	0	transcript_id "Ledus.S1G423800.t1"; gene_id "Ledus.S1G423800"
Ledus.S1	AUGUSTUS	exon	34424951	34425049	.	+	.	transcript_id "Ledus.S1G423800.t1"; gene_id "Ledus.S1G423800"
Ledus.S1	AUGUSTUS	intron	34425050	34425270	.	+	.	transcript_id "Ledus.S1G423800.t1"; gene_id "Ledus.S1G423800"
Ledus.S1	AUGUSTUS	CDS	34425271	34425612	1	+	0	transcript_id "Ledus.S1G423800.t1"; gene_id "Ledus.S1G423800"
Ledus.S1	AUGUSTUS	exon	34425271	34425612	.	+	.	transcript_id "Ledus.S1G423800.t1"; gene_id "Ledus.S1G423800"
Ledus.S1	AUGUSTUS	intron	34425613	34425784	.	+	.	transcript_id "Ledus.S1G423800.t1"; gene_id "Ledus.S1G423800"
Ledus.S1	AUGUSTUS	CDS	34425785	34426579	0.99	+	0	transcript_id "Ledus.S1G423800.t1"; gene_id "Ledus.S1G423800"
Ledus.S1	AUGUSTUS	exon	34425785	34426579	.	+	.	transcript_id "Ledus.S1G423800.t1"; gene_id "Ledus.S1G423800"
Ledus.S1	AUGUSTUS	stop_codon	34426580	34426582	.	+	0	transcript_id "Ledus.S1G423800.t1"; gene_id "Ledus.S1G423800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10682.t1 is derived from g11712.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17064711	17067312	.	-	.	Ledus.S3G215900
Ledus.S3	AUGUSTUS	transcript	17064711	17067312	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	stop_codon	17064708	17064710	.	-	0	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	CDS	17064711	17064849	1	-	1	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	exon	17064711	17064849	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	intron	17064850	17064973	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	CDS	17064974	17065080	1	-	0	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	exon	17064974	17065080	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	intron	17065081	17065207	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	CDS	17065208	17065389	0.98	-	2	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	exon	17065208	17065389	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	intron	17065390	17065472	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	CDS	17065473	17065593	1	-	0	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	exon	17065473	17065593	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	intron	17065594	17065660	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	CDS	17065661	17065807	1	-	0	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	exon	17065661	17065807	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	intron	17065808	17065993	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	CDS	17065994	17066078	1	-	1	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	exon	17065994	17066078	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	intron	17066079	17066252	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	CDS	17066253	17066314	1	-	0	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	exon	17066253	17066314	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	intron	17066315	17066480	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	CDS	17066481	17066630	1	-	0	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	exon	17066481	17066630	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	intron	17066631	17066717	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	CDS	17066718	17066793	1	-	1	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	exon	17066718	17066793	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	intron	17066794	17066925	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	CDS	17066926	17067026	1	-	0	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	exon	17066926	17067026	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	intron	17067027	17067258	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	CDS	17067259	17067312	0.62	-	0	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	exon	17067259	17067312	.	-	.	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
Ledus.S3	AUGUSTUS	start_codon	17067310	17067312	.	-	0	transcript_id "Ledus.S3G215900.t1"; gene_id "Ledus.S3G215900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2050.t1 is derived from g8913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14334831	14336547	.	-	.	Ledus.S2G193200
Ledus.S2	AUGUSTUS	transcript	14334831	14336547	.	-	.	transcript_id "Ledus.S2G193200.t1"; gene_id "Ledus.S2G193200"
Ledus.S2	AUGUSTUS	stop_codon	14334828	14334830	.	-	0	transcript_id "Ledus.S2G193200.t1"; gene_id "Ledus.S2G193200"
Ledus.S2	AUGUSTUS	CDS	14334831	14335574	1	-	0	transcript_id "Ledus.S2G193200.t1"; gene_id "Ledus.S2G193200"
Ledus.S2	AUGUSTUS	exon	14334831	14335574	.	-	.	transcript_id "Ledus.S2G193200.t1"; gene_id "Ledus.S2G193200"
Ledus.S2	AUGUSTUS	intron	14335575	14335656	.	-	.	transcript_id "Ledus.S2G193200.t1"; gene_id "Ledus.S2G193200"
Ledus.S2	AUGUSTUS	CDS	14335657	14336547	0.98	-	0	transcript_id "Ledus.S2G193200.t1"; gene_id "Ledus.S2G193200"
Ledus.S2	AUGUSTUS	exon	14335657	14336547	.	-	.	transcript_id "Ledus.S2G193200.t1"; gene_id "Ledus.S2G193200"
Ledus.S2	AUGUSTUS	start_codon	14336545	14336547	.	-	0	transcript_id "Ledus.S2G193200.t1"; gene_id "Ledus.S2G193200"
# This transcript jg2653.t2 is derived from g86.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2654.t1 is derived from g87.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1220852	1221842	.	+	.	Ledus.S1G007500
Ledus.S1	AUGUSTUS	transcript	1220852	1221842	.	+	.	transcript_id "Ledus.S1G007500.t1"; gene_id "Ledus.S1G007500"
Ledus.S1	AUGUSTUS	start_codon	1220852	1220854	.	+	0	transcript_id "Ledus.S1G007500.t1"; gene_id "Ledus.S1G007500"
Ledus.S1	AUGUSTUS	CDS	1220852	1220959	0.98	+	0	transcript_id "Ledus.S1G007500.t1"; gene_id "Ledus.S1G007500"
Ledus.S1	AUGUSTUS	exon	1220852	1220959	.	+	.	transcript_id "Ledus.S1G007500.t1"; gene_id "Ledus.S1G007500"
Ledus.S1	AUGUSTUS	intron	1220960	1221100	.	+	.	transcript_id "Ledus.S1G007500.t1"; gene_id "Ledus.S1G007500"
Ledus.S1	AUGUSTUS	CDS	1221101	1221149	0.98	+	0	transcript_id "Ledus.S1G007500.t1"; gene_id "Ledus.S1G007500"
Ledus.S1	AUGUSTUS	exon	1221101	1221149	.	+	.	transcript_id "Ledus.S1G007500.t1"; gene_id "Ledus.S1G007500"
Ledus.S1	AUGUSTUS	intron	1221150	1221219	.	+	.	transcript_id "Ledus.S1G007500.t1"; gene_id "Ledus.S1G007500"
Ledus.S1	AUGUSTUS	CDS	1221220	1221842	0.95	+	2	transcript_id "Ledus.S1G007500.t1"; gene_id "Ledus.S1G007500"
Ledus.S1	AUGUSTUS	exon	1221220	1221842	.	+	.	transcript_id "Ledus.S1G007500.t1"; gene_id "Ledus.S1G007500"
Ledus.S1	AUGUSTUS	stop_codon	1221843	1221845	.	+	0	transcript_id "Ledus.S1G007500.t1"; gene_id "Ledus.S1G007500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10749.t1 is derived from g11780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17479333	17479662	.	+	.	Ledus.S3G222600
Ledus.S3	AUGUSTUS	transcript	17479333	17479662	.	+	.	transcript_id "Ledus.S3G222600.t1"; gene_id "Ledus.S3G222600"
Ledus.S3	AUGUSTUS	start_codon	17479333	17479335	.	+	0	transcript_id "Ledus.S3G222600.t1"; gene_id "Ledus.S3G222600"
Ledus.S3	AUGUSTUS	CDS	17479333	17479662	0.85	+	0	transcript_id "Ledus.S3G222600.t1"; gene_id "Ledus.S3G222600"
Ledus.S3	AUGUSTUS	exon	17479333	17479662	.	+	.	transcript_id "Ledus.S3G222600.t1"; gene_id "Ledus.S3G222600"
Ledus.S3	AUGUSTUS	stop_codon	17479663	17479665	.	+	0	transcript_id "Ledus.S3G222600.t1"; gene_id "Ledus.S3G222600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4740.t1 is derived from g2178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19441147	19442587	.	+	.	Ledus.S1G216100
Ledus.S1	AUGUSTUS	transcript	19441147	19442587	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	start_codon	19441147	19441149	.	+	0	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	CDS	19441147	19441265	0.67	+	0	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	exon	19441147	19441265	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	intron	19441266	19441585	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	CDS	19441586	19441631	1	+	1	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	exon	19441586	19441631	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	intron	19441632	19441756	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	CDS	19441757	19441850	1	+	0	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	exon	19441757	19441850	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	intron	19441851	19441971	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	CDS	19441972	19442045	1	+	2	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	exon	19441972	19442045	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	intron	19442046	19442128	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	CDS	19442129	19442215	1	+	0	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	exon	19442129	19442215	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	intron	19442216	19442303	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	CDS	19442304	19442414	0.99	+	0	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	exon	19442304	19442414	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	intron	19442415	19442518	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	CDS	19442519	19442587	0.98	+	0	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	exon	19442519	19442587	.	+	.	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
Ledus.S1	AUGUSTUS	stop_codon	19442588	19442590	.	+	0	transcript_id "Ledus.S1G216100.t1"; gene_id "Ledus.S1G216100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1153.t1 is derived from g8014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7967954	7968541	.	-	.	Ledus.S2G103500
Ledus.S2	AUGUSTUS	transcript	7967954	7968541	.	-	.	transcript_id "Ledus.S2G103500.t1"; gene_id "Ledus.S2G103500"
Ledus.S2	AUGUSTUS	stop_codon	7967951	7967953	.	-	0	transcript_id "Ledus.S2G103500.t1"; gene_id "Ledus.S2G103500"
Ledus.S2	AUGUSTUS	CDS	7967954	7968541	0.71	-	0	transcript_id "Ledus.S2G103500.t1"; gene_id "Ledus.S2G103500"
Ledus.S2	AUGUSTUS	exon	7967954	7968541	.	-	.	transcript_id "Ledus.S2G103500.t1"; gene_id "Ledus.S2G103500"
Ledus.S2	AUGUSTUS	start_codon	7968539	7968541	.	-	0	transcript_id "Ledus.S2G103500.t1"; gene_id "Ledus.S2G103500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11866.t1 is derived from g5485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7439181	7440569	.	+	.	Ledus.S4G102200
Ledus.S4	AUGUSTUS	transcript	7439181	7440569	.	+	.	transcript_id "Ledus.S4G102200.t1"; gene_id "Ledus.S4G102200"
Ledus.S4	AUGUSTUS	start_codon	7439181	7439183	.	+	0	transcript_id "Ledus.S4G102200.t1"; gene_id "Ledus.S4G102200"
Ledus.S4	AUGUSTUS	CDS	7439181	7440569	0.46	+	0	transcript_id "Ledus.S4G102200.t1"; gene_id "Ledus.S4G102200"
Ledus.S4	AUGUSTUS	exon	7439181	7440569	.	+	.	transcript_id "Ledus.S4G102200.t1"; gene_id "Ledus.S4G102200"
Ledus.S4	AUGUSTUS	stop_codon	7440570	7440572	.	+	0	transcript_id "Ledus.S4G102200.t1"; gene_id "Ledus.S4G102200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13037.t1 is derived from g6847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3728991	3733315	.	+	.	Ledus.S6G009900
Ledus.S6	AUGUSTUS	transcript	3728991	3733315	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	start_codon	3728991	3728993	.	+	0	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	CDS	3728991	3728995	0.98	+	0	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	exon	3728991	3728995	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	intron	3728996	3729061	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	CDS	3729062	3729251	0.98	+	1	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	exon	3729062	3729251	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	intron	3729252	3729458	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	CDS	3729459	3729658	1	+	0	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	exon	3729459	3729658	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	intron	3729659	3729839	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	CDS	3729840	3729957	1	+	1	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	exon	3729840	3729957	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	intron	3729958	3730122	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	CDS	3730123	3730311	1	+	0	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	exon	3730123	3730311	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	intron	3730312	3730859	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	CDS	3730860	3731303	0.98	+	0	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	exon	3730860	3731303	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	intron	3731304	3731390	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	CDS	3731391	3731492	1	+	0	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	exon	3731391	3731492	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	intron	3731493	3731644	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	CDS	3731645	3731851	1	+	0	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	exon	3731645	3731851	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	intron	3731852	3732023	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	CDS	3732024	3732198	0.85	+	0	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	exon	3732024	3732198	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	intron	3732199	3732302	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	CDS	3732303	3732574	0.99	+	2	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	exon	3732303	3732574	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	intron	3732575	3732729	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	CDS	3732730	3732825	1	+	0	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	exon	3732730	3732825	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	intron	3732826	3732931	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	CDS	3732932	3733315	0.92	+	0	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	exon	3732932	3733315	.	+	.	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
Ledus.S6	AUGUSTUS	stop_codon	3733316	3733318	.	+	0	transcript_id "Ledus.S6G009900.t1"; gene_id "Ledus.S6G009900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9797.t1 is derived from g10827.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9866930	9879665	.	+	.	Ledus.S3G127400
Ledus.S3	AUGUSTUS	transcript	9866930	9879665	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	start_codon	9866930	9866932	.	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9866930	9867692	0.52	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9866930	9867692	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9867693	9867846	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9867847	9867926	1	+	2	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9867847	9867926	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9867927	9868688	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9868689	9869132	0.98	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9868689	9869132	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9869133	9869432	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9869433	9869666	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9869433	9869666	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9869667	9869758	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9869759	9869842	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9869759	9869842	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9869843	9870160	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9870161	9870220	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9870161	9870220	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9870221	9870381	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9870382	9870485	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9870382	9870485	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9870486	9871113	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9871114	9871165	1	+	1	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9871114	9871165	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9871166	9871496	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9871497	9871560	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9871497	9871560	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9871561	9871720	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9871721	9871814	1	+	2	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9871721	9871814	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9871815	9872036	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9872037	9872124	1	+	1	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9872037	9872124	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9872125	9872281	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9872282	9872416	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9872282	9872416	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9872417	9872816	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9872817	9873008	0.58	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9872817	9873008	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9873009	9873127	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9873128	9873195	0.99	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9873128	9873195	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9873196	9873432	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9873433	9873526	1	+	1	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9873433	9873526	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9873527	9873617	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9873618	9873742	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9873618	9873742	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9873743	9873832	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9873833	9873899	1	+	1	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9873833	9873899	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9873900	9874020	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9874021	9874233	0.98	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9874021	9874233	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9874234	9874413	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9874414	9874656	0.93	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9874414	9874656	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9874657	9874926	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9874927	9875037	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9874927	9875037	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9875038	9875360	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9875361	9875450	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9875361	9875450	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9875451	9875567	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9875568	9875753	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9875568	9875753	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9875754	9876005	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9876006	9876086	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9876006	9876086	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9876087	9876386	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9876387	9876450	0.83	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9876387	9876450	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9876451	9876547	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9876548	9876621	0.96	+	2	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9876548	9876621	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9876622	9876864	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9876865	9877020	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9876865	9877020	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9877021	9877224	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9877225	9877402	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9877225	9877402	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9877403	9877780	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9877781	9877962	0.99	+	2	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9877781	9877962	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9877963	9878269	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9878270	9878662	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9878270	9878662	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9878663	9878779	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9878780	9878870	1	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9878780	9878870	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9878871	9879041	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9879042	9879146	0.83	+	2	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9879042	9879146	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	intron	9879147	9879270	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	CDS	9879271	9879665	0.73	+	2	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	exon	9879271	9879665	.	+	.	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
Ledus.S3	AUGUSTUS	stop_codon	9879666	9879668	.	+	0	transcript_id "Ledus.S3G127400.t1"; gene_id "Ledus.S3G127400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1584.t1 is derived from g8445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11129827	11132920	.	+	.	Ledus.S2G146600
Ledus.S2	AUGUSTUS	transcript	11129827	11132920	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	start_codon	11129827	11129829	.	+	0	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	CDS	11129827	11130299	0.77	+	0	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	exon	11129827	11130299	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	intron	11130300	11130404	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	CDS	11130405	11130513	1	+	1	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	exon	11130405	11130513	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	intron	11130514	11130603	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	CDS	11130604	11130777	1	+	0	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	exon	11130604	11130777	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	intron	11130778	11130905	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	CDS	11130906	11131085	1	+	0	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	exon	11130906	11131085	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	intron	11131086	11131198	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	CDS	11131199	11131330	0.97	+	0	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	exon	11131199	11131330	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	intron	11131331	11131485	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	CDS	11131486	11131665	0.98	+	0	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	exon	11131486	11131665	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	intron	11131666	11131781	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	CDS	11131782	11131916	0.71	+	0	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	exon	11131782	11131916	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	intron	11131917	11132006	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	CDS	11132007	11132120	1	+	0	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	exon	11132007	11132120	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	intron	11132121	11132277	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	CDS	11132278	11132475	1	+	0	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	exon	11132278	11132475	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	intron	11132476	11132570	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	CDS	11132571	11132669	0.61	+	0	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	exon	11132571	11132669	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	intron	11132670	11132830	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	CDS	11132831	11132920	0.61	+	0	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	exon	11132831	11132920	.	+	.	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
Ledus.S2	AUGUSTUS	stop_codon	11132921	11132923	.	+	0	transcript_id "Ledus.S2G146600.t1"; gene_id "Ledus.S2G146600"
# This transcript jg9655.t2 is derived from g10685.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9655.t3 is derived from g10685.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9656.t1 is derived from g10686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8844910	8846767	.	-	.	Ledus.S3G113300
Ledus.S3	AUGUSTUS	transcript	8844910	8846767	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	stop_codon	8844907	8844909	.	-	0	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	CDS	8844910	8844944	0.96	-	2	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	exon	8844910	8844944	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	intron	8844945	8845051	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	CDS	8845052	8845145	0.96	-	0	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	exon	8845052	8845145	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	intron	8845146	8845247	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	CDS	8845248	8845541	1	-	0	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	exon	8845248	8845541	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	intron	8845542	8845627	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	CDS	8845628	8845699	1	-	0	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	exon	8845628	8845699	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	intron	8845700	8845781	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	CDS	8845782	8845916	1	-	0	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	exon	8845782	8845916	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	intron	8845917	8846000	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	CDS	8846001	8846180	1	-	0	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	exon	8846001	8846180	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	intron	8846181	8846281	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	CDS	8846282	8846425	0.99	-	0	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	exon	8846282	8846425	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	intron	8846426	8846488	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	CDS	8846489	8846767	0.73	-	0	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	exon	8846489	8846767	.	-	.	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
Ledus.S3	AUGUSTUS	start_codon	8846765	8846767	.	-	0	transcript_id "Ledus.S3G113300.t1"; gene_id "Ledus.S3G113300"
# This transcript jg9107.t2 is derived from g10137.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9108.t1 is derived from g10138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4639393	4642888	.	-	.	Ledus.S3G058500
Ledus.S3	AUGUSTUS	transcript	4639393	4642888	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	stop_codon	4639390	4639392	.	-	0	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4639393	4639494	1	-	0	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4639393	4639494	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4639495	4639577	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4639578	4639826	1	-	0	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4639578	4639826	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4639827	4639934	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4639935	4640148	1	-	1	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4639935	4640148	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4640149	4640252	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4640253	4640374	1	-	0	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4640253	4640374	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4640375	4640525	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4640526	4640633	1	-	0	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4640526	4640633	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4640634	4640767	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4640768	4641096	1	-	2	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4640768	4641096	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4641097	4641181	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4641182	4641275	1	-	0	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4641182	4641275	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4641276	4641373	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4641374	4641484	1	-	0	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4641374	4641484	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4641485	4641588	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4641589	4641673	0.97	-	1	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4641589	4641673	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4641674	4641843	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4641844	4641969	1	-	1	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4641844	4641969	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4641970	4642069	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4642070	4642189	1	-	1	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4642070	4642189	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4642190	4642299	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4642300	4642428	1	-	1	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4642300	4642428	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4642429	4642591	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4642592	4642677	1	-	0	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4642592	4642677	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	intron	4642678	4642864	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	CDS	4642865	4642888	0.99	-	0	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	exon	4642865	4642888	.	-	.	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
Ledus.S3	AUGUSTUS	start_codon	4642886	4642888	.	-	0	transcript_id "Ledus.S3G058500.t1"; gene_id "Ledus.S3G058500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8160.t1 is derived from g12831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9500105	9507488	.	+	.	Ledus.S5G093800
Ledus.S5	AUGUSTUS	transcript	9500105	9507488	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	start_codon	9500105	9500107	.	+	0	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9500105	9500302	0.98	+	0	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9500105	9500302	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9500303	9500418	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9500419	9500493	1	+	0	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9500419	9500493	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9500494	9500593	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9500594	9500716	1	+	0	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9500594	9500716	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9500717	9500979	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9500980	9501025	1	+	0	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9500980	9501025	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9501026	9501104	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9501105	9501265	1	+	2	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9501105	9501265	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9501266	9501459	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9501460	9501536	1	+	0	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9501460	9501536	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9501537	9501690	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9501691	9501796	1	+	1	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9501691	9501796	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9501797	9501983	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9501984	9502160	1	+	0	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9501984	9502160	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9502161	9502311	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9502312	9502950	0.98	+	0	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9502312	9502950	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9502951	9503101	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9503102	9503288	1	+	0	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9503102	9503288	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9503289	9503388	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9503389	9503538	0.67	+	2	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9503389	9503538	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9503539	9503661	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9503662	9506600	0.58	+	2	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9503662	9506600	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9506601	9506779	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9506780	9506961	0.29	+	0	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9506780	9506961	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9506962	9507054	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9507055	9507160	0.99	+	1	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9507055	9507160	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	intron	9507161	9507281	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	CDS	9507282	9507488	0.75	+	0	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	exon	9507282	9507488	.	+	.	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
Ledus.S5	AUGUSTUS	stop_codon	9507489	9507491	.	+	0	transcript_id "Ledus.S5G093800.t1"; gene_id "Ledus.S5G093800"
# This transcript jg11943.t2 is derived from g5562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11944.t1 is derived from g5563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7920201	7923878	.	+	.	Ledus.S4G110000
Ledus.S4	AUGUSTUS	transcript	7920201	7923878	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	start_codon	7920201	7920203	.	+	0	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	CDS	7920201	7920378	0.66	+	0	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	exon	7920201	7920378	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	intron	7920379	7920478	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	CDS	7920479	7920576	1	+	2	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	exon	7920479	7920576	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	intron	7920577	7920675	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	CDS	7920676	7920794	1	+	0	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	exon	7920676	7920794	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	intron	7920795	7920898	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	CDS	7920899	7921017	1	+	1	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	exon	7920899	7921017	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	intron	7921018	7921148	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	CDS	7921149	7922177	0.88	+	2	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	exon	7921149	7922177	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	intron	7922178	7922337	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	CDS	7922338	7922870	0.76	+	2	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	exon	7922338	7922870	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	intron	7922871	7922975	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	CDS	7922976	7923055	1	+	0	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	exon	7922976	7923055	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	intron	7923056	7923137	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	CDS	7923138	7923285	1	+	1	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	exon	7923138	7923285	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	intron	7923286	7923382	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	CDS	7923383	7923532	1	+	0	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	exon	7923383	7923532	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	intron	7923533	7923623	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	CDS	7923624	7923878	1	+	0	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	exon	7923624	7923878	.	+	.	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
Ledus.S4	AUGUSTUS	stop_codon	7923879	7923881	.	+	0	transcript_id "Ledus.S4G110000.t1"; gene_id "Ledus.S4G110000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4163.t1 is derived from g1599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15081086	15082304	.	+	.	Ledus.S1G158400
Ledus.S1	AUGUSTUS	transcript	15081086	15082304	.	+	.	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	start_codon	15081086	15081088	.	+	0	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	CDS	15081086	15081232	0.93	+	0	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	exon	15081086	15081232	.	+	.	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	intron	15081233	15081313	.	+	.	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	CDS	15081314	15081417	1	+	0	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	exon	15081314	15081417	.	+	.	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	intron	15081418	15081502	.	+	.	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	CDS	15081503	15081599	1	+	1	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	exon	15081503	15081599	.	+	.	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	intron	15081600	15081699	.	+	.	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	CDS	15081700	15081853	1	+	0	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	exon	15081700	15081853	.	+	.	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	intron	15081854	15081939	.	+	.	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	CDS	15081940	15081997	1	+	2	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	exon	15081940	15081997	.	+	.	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	intron	15081998	15082084	.	+	.	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	CDS	15082085	15082304	1	+	1	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	exon	15082085	15082304	.	+	.	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
Ledus.S1	AUGUSTUS	stop_codon	15082305	15082307	.	+	0	transcript_id "Ledus.S1G158400.t1"; gene_id "Ledus.S1G158400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1641.t1 is derived from g8502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11517660	11518234	.	+	.	Ledus.S2G152300
Ledus.S2	AUGUSTUS	transcript	11517660	11518234	.	+	.	transcript_id "Ledus.S2G152300.t1"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	start_codon	11517660	11517662	.	+	0	transcript_id "Ledus.S2G152300.t1"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	CDS	11517660	11517774	0.38	+	0	transcript_id "Ledus.S2G152300.t1"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	exon	11517660	11517774	.	+	.	transcript_id "Ledus.S2G152300.t1"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	intron	11517775	11517944	.	+	.	transcript_id "Ledus.S2G152300.t1"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	CDS	11517945	11518015	1	+	2	transcript_id "Ledus.S2G152300.t1"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	exon	11517945	11518015	.	+	.	transcript_id "Ledus.S2G152300.t1"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	intron	11518016	11518096	.	+	.	transcript_id "Ledus.S2G152300.t1"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	CDS	11518097	11518234	1	+	0	transcript_id "Ledus.S2G152300.t1"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	exon	11518097	11518234	.	+	.	transcript_id "Ledus.S2G152300.t1"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	stop_codon	11518235	11518237	.	+	0	transcript_id "Ledus.S2G152300.t1"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	transcript	11517660	11518234	.	+	.	transcript_id "Ledus.S2G152300.t2"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	start_codon	11517660	11517662	.	+	0	transcript_id "Ledus.S2G152300.t2"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	CDS	11517660	11517774	0.28	+	0	transcript_id "Ledus.S2G152300.t2"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	exon	11517660	11517774	.	+	.	transcript_id "Ledus.S2G152300.t2"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	intron	11517775	11517944	.	+	.	transcript_id "Ledus.S2G152300.t2"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	CDS	11517945	11518015	1	+	2	transcript_id "Ledus.S2G152300.t2"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	exon	11517945	11518015	.	+	.	transcript_id "Ledus.S2G152300.t2"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	intron	11518016	11518087	.	+	.	transcript_id "Ledus.S2G152300.t2"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	CDS	11518088	11518234	0.85	+	0	transcript_id "Ledus.S2G152300.t2"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	exon	11518088	11518234	.	+	.	transcript_id "Ledus.S2G152300.t2"; gene_id "Ledus.S2G152300"
Ledus.S2	AUGUSTUS	stop_codon	11518235	11518237	.	+	0	transcript_id "Ledus.S2G152300.t2"; gene_id "Ledus.S2G152300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6128.t1 is derived from g3571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29065325	29066096	.	+	.	Ledus.S1G354900
Ledus.S1	AUGUSTUS	transcript	29065325	29066096	.	+	.	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	start_codon	29065325	29065327	.	+	0	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	CDS	29065325	29065418	0.48	+	0	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	exon	29065325	29065418	.	+	.	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	intron	29065419	29065616	.	+	.	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	CDS	29065617	29065771	0.69	+	2	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	exon	29065617	29065771	.	+	.	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	intron	29065772	29065834	.	+	.	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	CDS	29065835	29065900	0.42	+	0	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	exon	29065835	29065900	.	+	.	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	intron	29065901	29065994	.	+	.	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	CDS	29065995	29066096	0.47	+	0	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	exon	29065995	29066096	.	+	.	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
Ledus.S1	AUGUSTUS	stop_codon	29066097	29066099	.	+	0	transcript_id "Ledus.S1G354900.t1"; gene_id "Ledus.S1G354900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9437.t1 is derived from g10467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6720647	6722980	.	-	.	Ledus.S3G091400
Ledus.S3	AUGUSTUS	transcript	6720647	6722980	.	-	.	transcript_id "Ledus.S3G091400.t1"; gene_id "Ledus.S3G091400"
Ledus.S3	AUGUSTUS	stop_codon	6720644	6720646	.	-	0	transcript_id "Ledus.S3G091400.t1"; gene_id "Ledus.S3G091400"
Ledus.S3	AUGUSTUS	CDS	6720647	6721223	0.9	-	1	transcript_id "Ledus.S3G091400.t1"; gene_id "Ledus.S3G091400"
Ledus.S3	AUGUSTUS	exon	6720647	6721223	.	-	.	transcript_id "Ledus.S3G091400.t1"; gene_id "Ledus.S3G091400"
Ledus.S3	AUGUSTUS	intron	6721224	6721309	.	-	.	transcript_id "Ledus.S3G091400.t1"; gene_id "Ledus.S3G091400"
Ledus.S3	AUGUSTUS	CDS	6721310	6721579	1	-	1	transcript_id "Ledus.S3G091400.t1"; gene_id "Ledus.S3G091400"
Ledus.S3	AUGUSTUS	exon	6721310	6721579	.	-	.	transcript_id "Ledus.S3G091400.t1"; gene_id "Ledus.S3G091400"
Ledus.S3	AUGUSTUS	intron	6721580	6721658	.	-	.	transcript_id "Ledus.S3G091400.t1"; gene_id "Ledus.S3G091400"
Ledus.S3	AUGUSTUS	CDS	6721659	6722980	0.68	-	0	transcript_id "Ledus.S3G091400.t1"; gene_id "Ledus.S3G091400"
Ledus.S3	AUGUSTUS	exon	6721659	6722980	.	-	.	transcript_id "Ledus.S3G091400.t1"; gene_id "Ledus.S3G091400"
Ledus.S3	AUGUSTUS	start_codon	6722978	6722980	.	-	0	transcript_id "Ledus.S3G091400.t1"; gene_id "Ledus.S3G091400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11063.t1 is derived from g4681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1542846	1544591	.	+	.	Ledus.S4G021900
Ledus.S4	AUGUSTUS	transcript	1543686	1544591	.	+	.	transcript_id "Ledus.S4G021900.t1"; gene_id "Ledus.S4G021900"
Ledus.S4	AUGUSTUS	start_codon	1543686	1543688	.	+	0	transcript_id "Ledus.S4G021900.t1"; gene_id "Ledus.S4G021900"
Ledus.S4	AUGUSTUS	CDS	1543686	1544591	0.91	+	0	transcript_id "Ledus.S4G021900.t1"; gene_id "Ledus.S4G021900"
Ledus.S4	AUGUSTUS	exon	1543686	1544591	.	+	.	transcript_id "Ledus.S4G021900.t1"; gene_id "Ledus.S4G021900"
Ledus.S4	AUGUSTUS	stop_codon	1544592	1544594	.	+	0	transcript_id "Ledus.S4G021900.t1"; gene_id "Ledus.S4G021900"
Ledus.S4	AUGUSTUS	transcript	1542846	1544591	.	+	.	transcript_id "Ledus.S4G021900.t2"; gene_id "Ledus.S4G021900"
Ledus.S4	AUGUSTUS	start_codon	1542846	1542848	.	+	0	transcript_id "Ledus.S4G021900.t2"; gene_id "Ledus.S4G021900"
Ledus.S4	AUGUSTUS	CDS	1542846	1544591	0.57	+	0	transcript_id "Ledus.S4G021900.t2"; gene_id "Ledus.S4G021900"
Ledus.S4	AUGUSTUS	exon	1542846	1544591	.	+	.	transcript_id "Ledus.S4G021900.t2"; gene_id "Ledus.S4G021900"
Ledus.S4	AUGUSTUS	stop_codon	1544592	1544594	.	+	0	transcript_id "Ledus.S4G021900.t2"; gene_id "Ledus.S4G021900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5287.t1 is derived from g2726.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22858910	22861266	.	+	.	Ledus.S1G270800
Ledus.S1	AUGUSTUS	transcript	22858910	22861266	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	start_codon	22858910	22858912	.	+	0	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	CDS	22858910	22858967	0.36	+	0	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	exon	22858910	22858967	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	intron	22858968	22859073	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	CDS	22859074	22859279	0.33	+	2	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	exon	22859074	22859279	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	intron	22859280	22859372	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	CDS	22859373	22859501	0.99	+	0	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	exon	22859373	22859501	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	intron	22859502	22859673	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	CDS	22859674	22859727	0.62	+	0	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	exon	22859674	22859727	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	intron	22859728	22859837	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	CDS	22859838	22859967	0.7	+	0	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	exon	22859838	22859967	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	intron	22859968	22860041	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	CDS	22860042	22860165	1	+	2	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	exon	22860042	22860165	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	intron	22860166	22860300	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	CDS	22860301	22860382	1	+	1	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	exon	22860301	22860382	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	intron	22860383	22860550	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	CDS	22860551	22860604	1	+	0	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	exon	22860551	22860604	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	intron	22860605	22860772	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	CDS	22860773	22860811	1	+	0	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	exon	22860773	22860811	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	intron	22860812	22860897	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	CDS	22860898	22860991	1	+	0	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	exon	22860898	22860991	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	intron	22860992	22861099	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	CDS	22861100	22861266	1	+	2	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	exon	22861100	22861266	.	+	.	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
Ledus.S1	AUGUSTUS	stop_codon	22861267	22861269	.	+	0	transcript_id "Ledus.S1G270800.t1"; gene_id "Ledus.S1G270800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4754.t1 is derived from g2192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19617122	19620280	.	-	.	Ledus.S1G217500
Ledus.S1	AUGUSTUS	transcript	19617122	19620280	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	stop_codon	19617119	19617121	.	-	0	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	CDS	19617122	19617250	0.82	-	0	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	exon	19617122	19617250	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	intron	19617251	19617356	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	CDS	19617357	19617630	1	-	1	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	exon	19617357	19617630	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	intron	19617631	19617713	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	CDS	19617714	19618033	1	-	0	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	exon	19617714	19618033	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	intron	19618034	19618114	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	CDS	19618115	19618237	1	-	0	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	exon	19618115	19618237	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	intron	19618238	19618401	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	CDS	19618402	19618497	1	-	0	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	exon	19618402	19618497	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	intron	19618498	19618673	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	CDS	19618674	19618844	1	-	0	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	exon	19618674	19618844	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	intron	19618845	19618919	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	CDS	19618920	19619086	1	-	2	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	exon	19618920	19619086	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	intron	19619087	19619171	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	CDS	19619172	19619337	0.99	-	0	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	exon	19619172	19619337	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	intron	19619338	19619421	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	CDS	19619422	19619560	0.77	-	1	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	exon	19619422	19619560	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	intron	19619561	19619670	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	CDS	19619671	19619863	0.9	-	2	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	exon	19619671	19619863	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	intron	19619864	19619985	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	CDS	19619986	19620068	1	-	1	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	exon	19619986	19620068	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	intron	19620069	19620176	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	CDS	19620177	19620280	1	-	0	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	exon	19620177	19620280	.	-	.	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
Ledus.S1	AUGUSTUS	start_codon	19620278	19620280	.	-	0	transcript_id "Ledus.S1G217500.t1"; gene_id "Ledus.S1G217500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8507.t1 is derived from g13179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12353713	12354573	.	+	.	Ledus.S5G128500
Ledus.S5	AUGUSTUS	transcript	12353713	12354573	.	+	.	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	start_codon	12353713	12353715	.	+	0	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	CDS	12353713	12353949	0.99	+	0	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	exon	12353713	12353949	.	+	.	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	intron	12353950	12354022	.	+	.	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	CDS	12354023	12354171	1	+	0	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	exon	12354023	12354171	.	+	.	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	intron	12354172	12354255	.	+	.	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	CDS	12354256	12354385	0.99	+	1	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	exon	12354256	12354385	.	+	.	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	intron	12354386	12354462	.	+	.	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	CDS	12354463	12354573	1	+	0	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	exon	12354463	12354573	.	+	.	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
Ledus.S5	AUGUSTUS	stop_codon	12354574	12354576	.	+	0	transcript_id "Ledus.S5G128500.t1"; gene_id "Ledus.S5G128500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5752.t1 is derived from g3192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26487801	26489282	.	-	.	Ledus.S1G317300
Ledus.S1	AUGUSTUS	transcript	26487801	26489282	.	-	.	transcript_id "Ledus.S1G317300.t1"; gene_id "Ledus.S1G317300"
Ledus.S1	AUGUSTUS	stop_codon	26487798	26487800	.	-	0	transcript_id "Ledus.S1G317300.t1"; gene_id "Ledus.S1G317300"
Ledus.S1	AUGUSTUS	CDS	26487801	26489282	1	-	0	transcript_id "Ledus.S1G317300.t1"; gene_id "Ledus.S1G317300"
Ledus.S1	AUGUSTUS	exon	26487801	26489282	.	-	.	transcript_id "Ledus.S1G317300.t1"; gene_id "Ledus.S1G317300"
Ledus.S1	AUGUSTUS	start_codon	26489280	26489282	.	-	0	transcript_id "Ledus.S1G317300.t1"; gene_id "Ledus.S1G317300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg958.t1 is derived from g7819.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6317282	6317943	.	-	.	Ledus.S2G084000
Ledus.S2	AUGUSTUS	transcript	6317282	6317943	.	-	.	transcript_id "Ledus.S2G084000.t1"; gene_id "Ledus.S2G084000"
Ledus.S2	AUGUSTUS	stop_codon	6317279	6317281	.	-	0	transcript_id "Ledus.S2G084000.t1"; gene_id "Ledus.S2G084000"
Ledus.S2	AUGUSTUS	CDS	6317282	6317396	0.89	-	1	transcript_id "Ledus.S2G084000.t1"; gene_id "Ledus.S2G084000"
Ledus.S2	AUGUSTUS	exon	6317282	6317396	.	-	.	transcript_id "Ledus.S2G084000.t1"; gene_id "Ledus.S2G084000"
Ledus.S2	AUGUSTUS	intron	6317397	6317680	.	-	.	transcript_id "Ledus.S2G084000.t1"; gene_id "Ledus.S2G084000"
Ledus.S2	AUGUSTUS	CDS	6317681	6317943	0.36	-	0	transcript_id "Ledus.S2G084000.t1"; gene_id "Ledus.S2G084000"
Ledus.S2	AUGUSTUS	exon	6317681	6317943	.	-	.	transcript_id "Ledus.S2G084000.t1"; gene_id "Ledus.S2G084000"
Ledus.S2	AUGUSTUS	start_codon	6317941	6317943	.	-	0	transcript_id "Ledus.S2G084000.t1"; gene_id "Ledus.S2G084000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10317.t1 is derived from g11347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14207291	14209075	.	+	.	Ledus.S3G179400
Ledus.S3	AUGUSTUS	transcript	14207291	14209075	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	start_codon	14207291	14207293	.	+	0	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	CDS	14207291	14207370	0.85	+	0	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	exon	14207291	14207370	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	intron	14207371	14207486	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	CDS	14207487	14207584	0.82	+	1	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	exon	14207487	14207584	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	intron	14207585	14207700	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	CDS	14207701	14207948	0.92	+	2	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	exon	14207701	14207948	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	intron	14207949	14208049	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	CDS	14208050	14208117	0.98	+	0	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	exon	14208050	14208117	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	intron	14208118	14208225	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	CDS	14208226	14208357	0.98	+	1	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	exon	14208226	14208357	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	intron	14208358	14208445	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	CDS	14208446	14208561	1	+	1	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	exon	14208446	14208561	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	intron	14208562	14208640	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	CDS	14208641	14208755	1	+	2	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	exon	14208641	14208755	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	intron	14208756	14208873	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	CDS	14208874	14209075	1	+	1	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	exon	14208874	14209075	.	+	.	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
Ledus.S3	AUGUSTUS	stop_codon	14209076	14209078	.	+	0	transcript_id "Ledus.S3G179400.t1"; gene_id "Ledus.S3G179400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8325.t1 is derived from g12997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10765469	10765985	.	+	.	Ledus.S5G110300
Ledus.S5	AUGUSTUS	transcript	10765469	10765985	.	+	.	transcript_id "Ledus.S5G110300.t1"; gene_id "Ledus.S5G110300"
Ledus.S5	AUGUSTUS	start_codon	10765469	10765471	.	+	0	transcript_id "Ledus.S5G110300.t1"; gene_id "Ledus.S5G110300"
Ledus.S5	AUGUSTUS	CDS	10765469	10765775	1	+	0	transcript_id "Ledus.S5G110300.t1"; gene_id "Ledus.S5G110300"
Ledus.S5	AUGUSTUS	exon	10765469	10765775	.	+	.	transcript_id "Ledus.S5G110300.t1"; gene_id "Ledus.S5G110300"
Ledus.S5	AUGUSTUS	intron	10765776	10765965	.	+	.	transcript_id "Ledus.S5G110300.t1"; gene_id "Ledus.S5G110300"
Ledus.S5	AUGUSTUS	CDS	10765966	10765985	1	+	2	transcript_id "Ledus.S5G110300.t1"; gene_id "Ledus.S5G110300"
Ledus.S5	AUGUSTUS	exon	10765966	10765985	.	+	.	transcript_id "Ledus.S5G110300.t1"; gene_id "Ledus.S5G110300"
Ledus.S5	AUGUSTUS	stop_codon	10765986	10765988	.	+	0	transcript_id "Ledus.S5G110300.t1"; gene_id "Ledus.S5G110300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg662.t1 is derived from g7523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3954741	3956018	.	+	.	Ledus.S2G054400
Ledus.S2	AUGUSTUS	transcript	3954741	3956018	.	+	.	transcript_id "Ledus.S2G054400.t1"; gene_id "Ledus.S2G054400"
Ledus.S2	AUGUSTUS	start_codon	3954741	3954743	.	+	0	transcript_id "Ledus.S2G054400.t1"; gene_id "Ledus.S2G054400"
Ledus.S2	AUGUSTUS	CDS	3954741	3956018	0.78	+	0	transcript_id "Ledus.S2G054400.t1"; gene_id "Ledus.S2G054400"
Ledus.S2	AUGUSTUS	exon	3954741	3956018	.	+	.	transcript_id "Ledus.S2G054400.t1"; gene_id "Ledus.S2G054400"
Ledus.S2	AUGUSTUS	stop_codon	3956019	3956021	.	+	0	transcript_id "Ledus.S2G054400.t1"; gene_id "Ledus.S2G054400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3988.t1 is derived from g1424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13922697	13924837	.	-	.	Ledus.S1G140900
Ledus.S1	AUGUSTUS	transcript	13922697	13924837	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	stop_codon	13922694	13922696	.	-	0	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	CDS	13922697	13922834	1	-	0	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	exon	13922697	13922834	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	intron	13922835	13922906	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	CDS	13922907	13923006	1	-	1	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	exon	13922907	13923006	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	intron	13923007	13923104	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	CDS	13923105	13923407	0.59	-	1	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	exon	13923105	13923407	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	intron	13923408	13923628	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	CDS	13923629	13923805	0.42	-	1	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	exon	13923629	13923805	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	intron	13923806	13923918	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	CDS	13923919	13923985	0.96	-	2	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	exon	13923919	13923985	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	intron	13923986	13924084	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	CDS	13924085	13924150	0.92	-	2	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	exon	13924085	13924150	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	intron	13924151	13924269	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	CDS	13924270	13924472	0.59	-	1	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	exon	13924270	13924472	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	intron	13924473	13924691	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	CDS	13924692	13924734	0.82	-	2	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	exon	13924692	13924734	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	intron	13924735	13924818	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	CDS	13924819	13924837	0.63	-	0	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	exon	13924819	13924837	.	-	.	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
Ledus.S1	AUGUSTUS	start_codon	13924835	13924837	.	-	0	transcript_id "Ledus.S1G140900.t1"; gene_id "Ledus.S1G140900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4288.t1 is derived from g1724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16072270	16073297	.	-	.	Ledus.S1G170900
Ledus.S1	AUGUSTUS	transcript	16072270	16073297	.	-	.	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	stop_codon	16072267	16072269	.	-	0	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	CDS	16072270	16072320	1	-	0	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	exon	16072270	16072320	.	-	.	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	intron	16072321	16072445	.	-	.	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	CDS	16072446	16072817	1	-	0	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	exon	16072446	16072817	.	-	.	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	intron	16072818	16072937	.	-	.	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	CDS	16072938	16073157	1	-	1	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	exon	16072938	16073157	.	-	.	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	intron	16073158	16073292	.	-	.	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	CDS	16073293	16073297	0.34	-	0	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	exon	16073293	16073297	.	-	.	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
Ledus.S1	AUGUSTUS	start_codon	16073295	16073297	.	-	0	transcript_id "Ledus.S1G170900.t1"; gene_id "Ledus.S1G170900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2350.t1 is derived from g9213.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17392017	17394803	.	-	.	Ledus.S2G223200
Ledus.S2	AUGUSTUS	transcript	17392017	17394803	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	stop_codon	17392014	17392016	.	-	0	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	CDS	17392017	17392237	1	-	2	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	exon	17392017	17392237	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	intron	17392238	17392370	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	CDS	17392371	17392437	1	-	0	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	exon	17392371	17392437	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	intron	17392438	17392633	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	CDS	17392634	17392696	1	-	0	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	exon	17392634	17392696	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	intron	17392697	17392973	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	CDS	17392974	17393297	0.82	-	0	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	exon	17392974	17393297	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	intron	17393298	17393403	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	CDS	17393404	17393472	0.99	-	0	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	exon	17393404	17393472	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	intron	17393473	17393598	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	CDS	17393599	17393796	1	-	0	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	exon	17393599	17393796	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	intron	17393797	17393925	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	CDS	17393926	17394151	1	-	1	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	exon	17393926	17394151	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	intron	17394152	17394311	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	CDS	17394312	17394421	1	-	0	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	exon	17394312	17394421	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	intron	17394422	17394533	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	CDS	17394534	17394803	0.93	-	0	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	exon	17394534	17394803	.	-	.	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
Ledus.S2	AUGUSTUS	start_codon	17394801	17394803	.	-	0	transcript_id "Ledus.S2G223200.t1"; gene_id "Ledus.S2G223200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1821.t1 is derived from g8684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12742181	12743333	.	-	.	Ledus.S2G170300
Ledus.S2	AUGUSTUS	transcript	12742181	12743333	.	-	.	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	stop_codon	12742178	12742180	.	-	0	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	CDS	12742181	12742275	0.94	-	2	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	exon	12742181	12742275	.	-	.	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	intron	12742276	12742386	.	-	.	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	CDS	12742387	12742513	0.93	-	0	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	exon	12742387	12742513	.	-	.	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	intron	12742514	12742610	.	-	.	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	CDS	12742611	12742670	1	-	0	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	exon	12742611	12742670	.	-	.	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	intron	12742671	12742797	.	-	.	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	CDS	12742798	12743001	1	-	0	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	exon	12742798	12743001	.	-	.	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	intron	12743002	12743234	.	-	.	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	CDS	12743235	12743333	0.96	-	0	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	exon	12743235	12743333	.	-	.	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
Ledus.S2	AUGUSTUS	start_codon	12743331	12743333	.	-	0	transcript_id "Ledus.S2G170300.t1"; gene_id "Ledus.S2G170300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg213.t1 is derived from g7074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	934784	935188	.	+	.	Ledus.S2G009500
Ledus.S2	AUGUSTUS	transcript	934784	935188	.	+	.	transcript_id "Ledus.S2G009500.t1"; gene_id "Ledus.S2G009500"
Ledus.S2	AUGUSTUS	start_codon	934784	934786	.	+	0	transcript_id "Ledus.S2G009500.t1"; gene_id "Ledus.S2G009500"
Ledus.S2	AUGUSTUS	CDS	934784	935188	1	+	0	transcript_id "Ledus.S2G009500.t1"; gene_id "Ledus.S2G009500"
Ledus.S2	AUGUSTUS	exon	934784	935188	.	+	.	transcript_id "Ledus.S2G009500.t1"; gene_id "Ledus.S2G009500"
Ledus.S2	AUGUSTUS	stop_codon	935189	935191	.	+	0	transcript_id "Ledus.S2G009500.t1"; gene_id "Ledus.S2G009500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3264.t1 is derived from g699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7175207	7176760	.	-	.	Ledus.S1G068500
Ledus.S1	AUGUSTUS	transcript	7175207	7176760	.	-	.	transcript_id "Ledus.S1G068500.t1"; gene_id "Ledus.S1G068500"
Ledus.S1	AUGUSTUS	stop_codon	7175204	7175206	.	-	0	transcript_id "Ledus.S1G068500.t1"; gene_id "Ledus.S1G068500"
Ledus.S1	AUGUSTUS	CDS	7175207	7176760	0.4	-	0	transcript_id "Ledus.S1G068500.t1"; gene_id "Ledus.S1G068500"
Ledus.S1	AUGUSTUS	exon	7175207	7176760	.	-	.	transcript_id "Ledus.S1G068500.t1"; gene_id "Ledus.S1G068500"
Ledus.S1	AUGUSTUS	start_codon	7176758	7176760	.	-	0	transcript_id "Ledus.S1G068500.t1"; gene_id "Ledus.S1G068500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12850.t1 is derived from g11884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	213076	213327	.	+	.	Ledus.C11G001400
Ledus.C11	AUGUSTUS	transcript	213076	213327	.	+	.	transcript_id "Ledus.C11G001400.t1"; gene_id "Ledus.C11G001400"
Ledus.C11	AUGUSTUS	start_codon	213076	213078	.	+	0	transcript_id "Ledus.C11G001400.t1"; gene_id "Ledus.C11G001400"
Ledus.C11	AUGUSTUS	CDS	213076	213327	0.45	+	0	transcript_id "Ledus.C11G001400.t1"; gene_id "Ledus.C11G001400"
Ledus.C11	AUGUSTUS	exon	213076	213327	.	+	.	transcript_id "Ledus.C11G001400.t1"; gene_id "Ledus.C11G001400"
Ledus.C11	AUGUSTUS	stop_codon	213328	213330	.	+	0	transcript_id "Ledus.C11G001400.t1"; gene_id "Ledus.C11G001400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg11588.t1 is derived from g5206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5414698	5419367	.	-	.	Ledus.S4G074400
Ledus.S4	AUGUSTUS	transcript	5414698	5419367	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	stop_codon	5414695	5414697	.	-	0	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5414698	5414867	0.67	-	2	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5414698	5414867	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5414868	5415124	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5415125	5415429	0.98	-	1	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5415125	5415429	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5415430	5415539	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5415540	5415758	0.96	-	1	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5415540	5415758	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5415759	5415947	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5415948	5416287	0.88	-	2	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5415948	5416287	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5416288	5416448	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5416449	5416629	0.99	-	0	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5416449	5416629	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5416630	5416806	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5416807	5416986	1	-	0	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5416807	5416986	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5416987	5417077	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417078	5417206	0.85	-	0	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417078	5417206	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5417207	5417323	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417324	5417512	1	-	0	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417324	5417512	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5417513	5417740	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417741	5417773	1	-	0	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417741	5417773	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5417774	5417937	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417938	5418070	1	-	1	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417938	5418070	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5418071	5418169	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5418170	5418259	1	-	1	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5418170	5418259	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5418260	5418355	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5418356	5418445	1	-	1	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5418356	5418445	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5418446	5418617	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5418618	5418898	1	-	0	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5418618	5418898	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5418899	5419001	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5419002	5419157	0.53	-	0	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5419002	5419157	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5419158	5419256	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5419257	5419367	0.76	-	0	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5419257	5419367	.	-	.	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	start_codon	5419365	5419367	.	-	0	transcript_id "Ledus.S4G074400.t1"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	transcript	5414805	5419367	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	stop_codon	5414802	5414804	.	-	0	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5414805	5414842	0.33	-	2	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5414805	5414842	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5414843	5415124	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5415125	5415429	0.33	-	1	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5415125	5415429	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5415430	5415539	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5415540	5415758	0.78	-	1	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5415540	5415758	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5415759	5415947	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5415948	5416287	0.95	-	2	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5415948	5416287	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5416288	5416448	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5416449	5416629	1	-	0	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5416449	5416629	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5416630	5416806	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5416807	5416986	1	-	0	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5416807	5416986	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5416987	5417077	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417078	5417206	0.78	-	0	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417078	5417206	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5417207	5417323	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417324	5417512	0.99	-	0	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417324	5417512	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5417513	5417740	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417741	5417773	1	-	0	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417741	5417773	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5417774	5417937	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417938	5418070	1	-	1	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417938	5418070	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5418071	5418169	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5418170	5418259	1	-	1	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5418170	5418259	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5418260	5418355	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5418356	5418445	1	-	1	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5418356	5418445	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5418446	5418617	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5418618	5418898	1	-	0	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5418618	5418898	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5418899	5419001	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5419002	5419157	0.52	-	0	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5419002	5419157	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5419158	5419256	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5419257	5419367	0.77	-	0	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5419257	5419367	.	-	.	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	start_codon	5419365	5419367	.	-	0	transcript_id "Ledus.S4G074400.t2"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	transcript	5417683	5419367	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	stop_codon	5417680	5417682	.	-	0	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417683	5417773	0.47	-	1	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417683	5417773	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5417774	5417926	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417927	5418070	0.62	-	1	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417927	5418070	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5418071	5418169	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5418170	5418259	1	-	1	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5418170	5418259	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5418260	5418355	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5418356	5418445	1	-	1	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5418356	5418445	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5418446	5418617	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5418618	5418898	1	-	0	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5418618	5418898	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5418899	5419001	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5419002	5419157	0.66	-	0	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5419002	5419157	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5419158	5419256	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5419257	5419367	0.7	-	0	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5419257	5419367	.	-	.	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	start_codon	5419365	5419367	.	-	0	transcript_id "Ledus.S4G074400.t3"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	transcript	5414805	5417687	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	stop_codon	5414802	5414804	.	-	0	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5414805	5414842	0.17	-	2	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5414805	5414842	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5414843	5415124	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5415125	5415429	0.17	-	1	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5415125	5415429	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5415430	5415539	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5415540	5415758	0.77	-	1	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5415540	5415758	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5415759	5415947	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5415948	5416287	0.89	-	2	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5415948	5416287	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5416288	5416448	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5416449	5416629	1	-	0	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5416449	5416629	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5416630	5416806	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5416807	5416986	1	-	0	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5416807	5416986	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5416987	5417077	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417078	5417110	0.43	-	0	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417078	5417110	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5417111	5417264	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417265	5417334	0.3	-	1	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417265	5417334	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5417335	5417491	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417492	5417512	0.62	-	1	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417492	5417512	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	intron	5417513	5417673	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	CDS	5417674	5417687	0.83	-	0	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	exon	5417674	5417687	.	-	.	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
Ledus.S4	AUGUSTUS	start_codon	5417685	5417687	.	-	0	transcript_id "Ledus.S4G074400.t4"; gene_id "Ledus.S4G074400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1225.t1 is derived from g8086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8736799	8737697	.	+	.	Ledus.S2G110700
Ledus.S2	AUGUSTUS	transcript	8736799	8737697	.	+	.	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	start_codon	8736799	8736801	.	+	0	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	CDS	8736799	8737044	0.58	+	0	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	exon	8736799	8737044	.	+	.	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	intron	8737045	8737159	.	+	.	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	CDS	8737160	8737292	1	+	0	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	exon	8737160	8737292	.	+	.	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	intron	8737293	8737402	.	+	.	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	CDS	8737403	8737488	0.99	+	2	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	exon	8737403	8737488	.	+	.	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	intron	8737489	8737589	.	+	.	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	CDS	8737590	8737697	1	+	0	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	exon	8737590	8737697	.	+	.	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
Ledus.S2	AUGUSTUS	stop_codon	8737698	8737700	.	+	0	transcript_id "Ledus.S2G110700.t1"; gene_id "Ledus.S2G110700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2585.t1 is derived from g18.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	160558	161549	.	+	.	Ledus.S1G000600
Ledus.S1	AUGUSTUS	transcript	160558	161382	.	+	.	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	start_codon	160558	160560	.	+	0	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	CDS	160558	160631	0.53	+	0	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	exon	160558	160631	.	+	.	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	intron	160632	160821	.	+	.	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	CDS	160822	160876	0.6	+	1	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	exon	160822	160876	.	+	.	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	intron	160877	161021	.	+	.	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	CDS	161022	161038	0.68	+	0	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	exon	161022	161038	.	+	.	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	intron	161039	161127	.	+	.	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	CDS	161128	161226	1	+	1	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	exon	161128	161226	.	+	.	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	intron	161227	161363	.	+	.	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	CDS	161364	161382	1	+	1	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	exon	161364	161382	.	+	.	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	stop_codon	161383	161385	.	+	0	transcript_id "Ledus.S1G000600.t1"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	transcript	160558	161549	.	+	.	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	start_codon	160558	160560	.	+	0	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	CDS	160558	160631	0.48	+	0	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	exon	160558	160631	.	+	.	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	intron	160632	160821	.	+	.	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	CDS	160822	160876	0.54	+	1	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	exon	160822	160876	.	+	.	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	intron	160877	161021	.	+	.	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	CDS	161022	161038	0.6	+	0	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	exon	161022	161038	.	+	.	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	intron	161039	161127	.	+	.	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	CDS	161128	161226	1	+	1	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	exon	161128	161226	.	+	.	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	intron	161227	161515	.	+	.	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	CDS	161516	161549	0.85	+	1	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	exon	161516	161549	.	+	.	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
Ledus.S1	AUGUSTUS	stop_codon	161550	161552	.	+	0	transcript_id "Ledus.S1G000600.t2"; gene_id "Ledus.S1G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8685.t1 is derived from g9715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1363208	1364185	.	-	.	Ledus.S3G016200
Ledus.S3	AUGUSTUS	transcript	1363208	1364185	.	-	.	transcript_id "Ledus.S3G016200.t1"; gene_id "Ledus.S3G016200"
Ledus.S3	AUGUSTUS	stop_codon	1363205	1363207	.	-	0	transcript_id "Ledus.S3G016200.t1"; gene_id "Ledus.S3G016200"
Ledus.S3	AUGUSTUS	CDS	1363208	1364185	1	-	0	transcript_id "Ledus.S3G016200.t1"; gene_id "Ledus.S3G016200"
Ledus.S3	AUGUSTUS	exon	1363208	1364185	.	-	.	transcript_id "Ledus.S3G016200.t1"; gene_id "Ledus.S3G016200"
Ledus.S3	AUGUSTUS	start_codon	1364183	1364185	.	-	0	transcript_id "Ledus.S3G016200.t1"; gene_id "Ledus.S3G016200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11520.t1 is derived from g5138.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5030467	5031940	.	-	.	Ledus.S4G067600
Ledus.S4	AUGUSTUS	transcript	5030467	5031940	.	-	.	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	stop_codon	5030464	5030466	.	-	0	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	CDS	5030467	5031112	1	-	1	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	exon	5030467	5031112	.	-	.	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	intron	5031113	5031200	.	-	.	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	CDS	5031201	5031463	1	-	0	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	exon	5031201	5031463	.	-	.	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	intron	5031464	5031553	.	-	.	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	CDS	5031554	5031698	1	-	1	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	exon	5031554	5031698	.	-	.	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	intron	5031699	5031791	.	-	.	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	CDS	5031792	5031940	0.24	-	0	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	exon	5031792	5031940	.	-	.	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	start_codon	5031938	5031940	.	-	0	transcript_id "Ledus.S4G067600.t1"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	transcript	5030467	5031940	.	-	.	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	stop_codon	5030464	5030466	.	-	0	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	CDS	5030467	5031112	1	-	1	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	exon	5030467	5031112	.	-	.	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	intron	5031113	5031200	.	-	.	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	CDS	5031201	5031463	1	-	0	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	exon	5031201	5031463	.	-	.	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	intron	5031464	5031553	.	-	.	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	CDS	5031554	5031698	1	-	1	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	exon	5031554	5031698	.	-	.	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	intron	5031699	5031797	.	-	.	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	CDS	5031798	5031940	0.18	-	0	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	exon	5031798	5031940	.	-	.	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
Ledus.S4	AUGUSTUS	start_codon	5031938	5031940	.	-	0	transcript_id "Ledus.S4G067600.t2"; gene_id "Ledus.S4G067600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2416.t1 is derived from g9279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18010255	18011051	.	-	.	Ledus.S2G229800
Ledus.S2	AUGUSTUS	transcript	18010255	18011051	.	-	.	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	stop_codon	18010252	18010254	.	-	0	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	CDS	18010255	18010406	0.68	-	2	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	exon	18010255	18010406	.	-	.	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	intron	18010407	18010506	.	-	.	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	CDS	18010507	18010627	1	-	0	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	exon	18010507	18010627	.	-	.	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	intron	18010628	18010767	.	-	.	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	CDS	18010768	18010909	1	-	1	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	exon	18010768	18010909	.	-	.	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	intron	18010910	18010992	.	-	.	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	CDS	18010993	18011051	0.99	-	0	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	exon	18010993	18011051	.	-	.	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
Ledus.S2	AUGUSTUS	start_codon	18011049	18011051	.	-	0	transcript_id "Ledus.S2G229800.t1"; gene_id "Ledus.S2G229800"
# This transcript jg5526.t2 is derived from g2965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5527.t1 is derived from g2966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24948841	24952520	.	+	.	Ledus.S1G294800
Ledus.S1	AUGUSTUS	transcript	24948841	24952520	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	start_codon	24948841	24948843	.	+	0	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24948841	24948941	0.73	+	0	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24948841	24948941	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24948942	24949185	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24949186	24949231	1	+	1	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24949186	24949231	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24949232	24949330	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24949331	24949497	1	+	0	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24949331	24949497	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24949498	24949578	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24949579	24949696	1	+	1	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24949579	24949696	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24949697	24949855	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24949856	24949938	0.99	+	0	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24949856	24949938	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24949939	24950049	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24950050	24950109	0.99	+	1	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24950050	24950109	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24950110	24950242	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24950243	24950530	0.98	+	1	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24950243	24950530	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24950531	24950641	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24950642	24950738	1	+	1	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24950642	24950738	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24950739	24950978	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24950979	24951029	1	+	0	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24950979	24951029	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24951030	24951123	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24951124	24951204	1	+	0	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24951124	24951204	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24951205	24951292	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24951293	24951364	1	+	0	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24951293	24951364	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24951365	24951542	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24951543	24951605	0.91	+	0	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24951543	24951605	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24951606	24951726	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24951727	24951879	0.92	+	0	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24951727	24951879	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24951880	24952017	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24952018	24952075	1	+	0	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24952018	24952075	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24952076	24952257	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24952258	24952340	1	+	2	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24952258	24952340	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	intron	24952341	24952439	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	CDS	24952440	24952520	1	+	0	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	exon	24952440	24952520	.	+	.	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
Ledus.S1	AUGUSTUS	stop_codon	24952521	24952523	.	+	0	transcript_id "Ledus.S1G294800.t1"; gene_id "Ledus.S1G294800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg718.t1 is derived from g7579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4437907	4441043	.	-	.	Ledus.S2G060000
Ledus.S2	AUGUSTUS	transcript	4437907	4441043	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	stop_codon	4437904	4437906	.	-	0	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	CDS	4437907	4438168	0.77	-	1	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	exon	4437907	4438168	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	intron	4438169	4438344	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	CDS	4438345	4438562	1	-	0	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	exon	4438345	4438562	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	intron	4438563	4438724	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	CDS	4438725	4438828	0.98	-	2	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	exon	4438725	4438828	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	intron	4438829	4439187	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	CDS	4439188	4439212	0.95	-	0	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	exon	4439188	4439212	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	intron	4439213	4439374	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	CDS	4439375	4439398	0.68	-	0	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	exon	4439375	4439398	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	intron	4439399	4439843	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	CDS	4439844	4440069	0.83	-	1	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	exon	4439844	4440069	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	intron	4440070	4440163	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	CDS	4440164	4440363	1	-	0	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	exon	4440164	4440363	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	intron	4440364	4440537	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	CDS	4440538	4440653	0.66	-	2	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	exon	4440538	4440653	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	intron	4440654	4440745	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	CDS	4440746	4440832	0.98	-	2	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	exon	4440746	4440832	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	intron	4440833	4441021	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	CDS	4441022	4441043	0.5	-	0	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	exon	4441022	4441043	.	-	.	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
Ledus.S2	AUGUSTUS	start_codon	4441041	4441043	.	-	0	transcript_id "Ledus.S2G060000.t1"; gene_id "Ledus.S2G060000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg703.t1 is derived from g7564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4327087	4329285	.	+	.	Ledus.S2G058500
Ledus.S2	AUGUSTUS	transcript	4327087	4329285	.	+	.	transcript_id "Ledus.S2G058500.t1"; gene_id "Ledus.S2G058500"
Ledus.S2	AUGUSTUS	start_codon	4327087	4327089	.	+	0	transcript_id "Ledus.S2G058500.t1"; gene_id "Ledus.S2G058500"
Ledus.S2	AUGUSTUS	CDS	4327087	4329285	0.99	+	0	transcript_id "Ledus.S2G058500.t1"; gene_id "Ledus.S2G058500"
Ledus.S2	AUGUSTUS	exon	4327087	4329285	.	+	.	transcript_id "Ledus.S2G058500.t1"; gene_id "Ledus.S2G058500"
Ledus.S2	AUGUSTUS	stop_codon	4329286	4329288	.	+	0	transcript_id "Ledus.S2G058500.t1"; gene_id "Ledus.S2G058500"
Ledus.S2	AUGUSTUS	transcript	4328119	4329285	.	+	.	transcript_id "Ledus.S2G058500.t2"; gene_id "Ledus.S2G058500"
Ledus.S2	AUGUSTUS	start_codon	4328119	4328121	.	+	0	transcript_id "Ledus.S2G058500.t2"; gene_id "Ledus.S2G058500"
Ledus.S2	AUGUSTUS	CDS	4328119	4329285	0.56	+	0	transcript_id "Ledus.S2G058500.t2"; gene_id "Ledus.S2G058500"
Ledus.S2	AUGUSTUS	exon	4328119	4329285	.	+	.	transcript_id "Ledus.S2G058500.t2"; gene_id "Ledus.S2G058500"
Ledus.S2	AUGUSTUS	stop_codon	4329286	4329288	.	+	0	transcript_id "Ledus.S2G058500.t2"; gene_id "Ledus.S2G058500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12062.t1 is derived from g5681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9274544	9276097	.	-	.	Ledus.S4G121800
Ledus.S4	AUGUSTUS	transcript	9274544	9276097	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	stop_codon	9274541	9274543	.	-	0	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	CDS	9274544	9274564	1	-	0	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	exon	9274544	9274564	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	intron	9274565	9274652	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	CDS	9274653	9274767	1	-	1	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	exon	9274653	9274767	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	intron	9274768	9274899	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	CDS	9274900	9275005	0.99	-	2	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	exon	9274900	9275005	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	intron	9275006	9275112	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	CDS	9275113	9275265	1	-	2	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	exon	9275113	9275265	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	intron	9275266	9275342	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	CDS	9275343	9275580	1	-	0	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	exon	9275343	9275580	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	intron	9275581	9275665	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	CDS	9275666	9275807	1	-	1	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	exon	9275666	9275807	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	intron	9275808	9275966	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	CDS	9275967	9276097	0.6	-	0	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	exon	9275967	9276097	.	-	.	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
Ledus.S4	AUGUSTUS	start_codon	9276095	9276097	.	-	0	transcript_id "Ledus.S4G121800.t1"; gene_id "Ledus.S4G121800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7419.t1 is derived from g12090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2231818	2233188	.	-	.	Ledus.S5G019700
Ledus.S5	AUGUSTUS	transcript	2231818	2233188	.	-	.	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	stop_codon	2231815	2231817	.	-	0	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	CDS	2231818	2232044	0.81	-	2	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	exon	2231818	2232044	.	-	.	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	intron	2232045	2232219	.	-	.	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	CDS	2232220	2232292	0.99	-	0	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	exon	2232220	2232292	.	-	.	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	intron	2232293	2232453	.	-	.	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	CDS	2232454	2232506	0.64	-	2	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	exon	2232454	2232506	.	-	.	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	intron	2232507	2232881	.	-	.	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	CDS	2232882	2233188	0.44	-	0	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	exon	2232882	2233188	.	-	.	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
Ledus.S5	AUGUSTUS	start_codon	2233186	2233188	.	-	0	transcript_id "Ledus.S5G019700.t1"; gene_id "Ledus.S5G019700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1162.t1 is derived from g8023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8016987	8019104	.	+	.	Ledus.S2G104400
Ledus.S2	AUGUSTUS	transcript	8018181	8019104	.	+	.	transcript_id "Ledus.S2G104400.t1"; gene_id "Ledus.S2G104400"
Ledus.S2	AUGUSTUS	start_codon	8018181	8018183	.	+	0	transcript_id "Ledus.S2G104400.t1"; gene_id "Ledus.S2G104400"
Ledus.S2	AUGUSTUS	CDS	8018181	8019104	0.99	+	0	transcript_id "Ledus.S2G104400.t1"; gene_id "Ledus.S2G104400"
Ledus.S2	AUGUSTUS	exon	8018181	8019104	.	+	.	transcript_id "Ledus.S2G104400.t1"; gene_id "Ledus.S2G104400"
Ledus.S2	AUGUSTUS	stop_codon	8019105	8019107	.	+	0	transcript_id "Ledus.S2G104400.t1"; gene_id "Ledus.S2G104400"
Ledus.S2	AUGUSTUS	transcript	8016987	8019104	.	+	.	transcript_id "Ledus.S2G104400.t2"; gene_id "Ledus.S2G104400"
Ledus.S2	AUGUSTUS	start_codon	8016987	8016989	.	+	0	transcript_id "Ledus.S2G104400.t2"; gene_id "Ledus.S2G104400"
Ledus.S2	AUGUSTUS	CDS	8016987	8019104	0.55	+	0	transcript_id "Ledus.S2G104400.t2"; gene_id "Ledus.S2G104400"
Ledus.S2	AUGUSTUS	exon	8016987	8019104	.	+	.	transcript_id "Ledus.S2G104400.t2"; gene_id "Ledus.S2G104400"
Ledus.S2	AUGUSTUS	stop_codon	8019105	8019107	.	+	0	transcript_id "Ledus.S2G104400.t2"; gene_id "Ledus.S2G104400"
# This transcript jg2602.t2 is derived from g35.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2603.t1 is derived from g36.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	364272	365391	.	+	.	Ledus.S1G002400
Ledus.S1	AUGUSTUS	transcript	364272	365391	.	+	.	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	start_codon	364272	364274	.	+	0	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	CDS	364272	364511	0.66	+	0	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	exon	364272	364511	.	+	.	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	intron	364512	364671	.	+	.	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	CDS	364672	364815	1	+	0	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	exon	364672	364815	.	+	.	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	intron	364816	364890	.	+	.	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	CDS	364891	365115	0.74	+	0	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	exon	364891	365115	.	+	.	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	intron	365116	365214	.	+	.	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	CDS	365215	365391	1	+	0	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	exon	365215	365391	.	+	.	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	stop_codon	365392	365394	.	+	0	transcript_id "Ledus.S1G002400.t1"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	transcript	364272	365391	.	+	.	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	start_codon	364272	364274	.	+	0	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	CDS	364272	364511	0.64	+	0	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	exon	364272	364511	.	+	.	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	intron	364512	364592	.	+	.	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	CDS	364593	364618	0.7	+	0	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	exon	364593	364618	.	+	.	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	intron	364619	364685	.	+	.	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	CDS	364686	364815	0.68	+	1	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	exon	364686	364815	.	+	.	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	intron	364816	364890	.	+	.	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	CDS	364891	365115	0.76	+	0	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	exon	364891	365115	.	+	.	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	intron	365116	365214	.	+	.	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	CDS	365215	365391	1	+	0	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	exon	365215	365391	.	+	.	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
Ledus.S1	AUGUSTUS	stop_codon	365392	365394	.	+	0	transcript_id "Ledus.S1G002400.t2"; gene_id "Ledus.S1G002400"
# This transcript jg2909.t2 is derived from g344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2910.t1 is derived from g345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4528438	4530354	.	-	.	Ledus.S1G033100
Ledus.S1	AUGUSTUS	transcript	4528438	4530354	.	-	.	transcript_id "Ledus.S1G033100.t1"; gene_id "Ledus.S1G033100"
Ledus.S1	AUGUSTUS	stop_codon	4528435	4528437	.	-	0	transcript_id "Ledus.S1G033100.t1"; gene_id "Ledus.S1G033100"
Ledus.S1	AUGUSTUS	CDS	4528438	4530354	0.55	-	0	transcript_id "Ledus.S1G033100.t1"; gene_id "Ledus.S1G033100"
Ledus.S1	AUGUSTUS	exon	4528438	4530354	.	-	.	transcript_id "Ledus.S1G033100.t1"; gene_id "Ledus.S1G033100"
Ledus.S1	AUGUSTUS	start_codon	4530352	4530354	.	-	0	transcript_id "Ledus.S1G033100.t1"; gene_id "Ledus.S1G033100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg273.t1 is derived from g7134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1321117	1324056	.	+	.	Ledus.S2G015500
Ledus.S2	AUGUSTUS	transcript	1321117	1324056	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	start_codon	1321117	1321119	.	+	0	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	CDS	1321117	1321680	1	+	0	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	exon	1321117	1321680	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	intron	1321681	1321809	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	CDS	1321810	1321884	1	+	0	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	exon	1321810	1321884	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	intron	1321885	1322001	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	CDS	1322002	1322213	0.98	+	0	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	exon	1322002	1322213	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	intron	1322214	1322381	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	CDS	1322382	1322544	1	+	1	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	exon	1322382	1322544	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	intron	1322545	1322698	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	CDS	1322699	1322827	1	+	0	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	exon	1322699	1322827	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	intron	1322828	1322921	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	CDS	1322922	1323757	0.97	+	0	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	exon	1322922	1323757	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	intron	1323758	1323848	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	CDS	1323849	1324056	1	+	1	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	exon	1323849	1324056	.	+	.	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
Ledus.S2	AUGUSTUS	stop_codon	1324057	1324059	.	+	0	transcript_id "Ledus.S2G015500.t1"; gene_id "Ledus.S2G015500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10710.t1 is derived from g11740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17309688	17311617	.	-	.	Ledus.S3G218700
Ledus.S3	AUGUSTUS	transcript	17309688	17311617	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	stop_codon	17309685	17309687	.	-	0	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	CDS	17309688	17309849	0.63	-	0	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	exon	17309688	17309849	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	intron	17309850	17309932	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	CDS	17309933	17309982	1	-	2	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	exon	17309933	17309982	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	intron	17309983	17310111	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	CDS	17310112	17310229	1	-	0	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	exon	17310112	17310229	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	intron	17310230	17310306	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	CDS	17310307	17310349	1	-	1	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	exon	17310307	17310349	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	intron	17310350	17310524	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	CDS	17310525	17310649	1	-	0	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	exon	17310525	17310649	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	intron	17310650	17310734	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	CDS	17310735	17310824	1	-	0	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	exon	17310735	17310824	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	intron	17310825	17310957	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	CDS	17310958	17311090	1	-	1	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	exon	17310958	17311090	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	intron	17311091	17311474	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	CDS	17311475	17311617	1	-	0	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	exon	17311475	17311617	.	-	.	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
Ledus.S3	AUGUSTUS	start_codon	17311615	17311617	.	-	0	transcript_id "Ledus.S3G218700.t1"; gene_id "Ledus.S3G218700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5896.t1 is derived from g3339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27684602	27685388	.	-	.	Ledus.S1G331700
Ledus.S1	AUGUSTUS	transcript	27684602	27685388	.	-	.	transcript_id "Ledus.S1G331700.t1"; gene_id "Ledus.S1G331700"
Ledus.S1	AUGUSTUS	stop_codon	27684599	27684601	.	-	0	transcript_id "Ledus.S1G331700.t1"; gene_id "Ledus.S1G331700"
Ledus.S1	AUGUSTUS	CDS	27684602	27684695	0.76	-	1	transcript_id "Ledus.S1G331700.t1"; gene_id "Ledus.S1G331700"
Ledus.S1	AUGUSTUS	exon	27684602	27684695	.	-	.	transcript_id "Ledus.S1G331700.t1"; gene_id "Ledus.S1G331700"
Ledus.S1	AUGUSTUS	intron	27684696	27684882	.	-	.	transcript_id "Ledus.S1G331700.t1"; gene_id "Ledus.S1G331700"
Ledus.S1	AUGUSTUS	CDS	27684883	27685388	0.47	-	0	transcript_id "Ledus.S1G331700.t1"; gene_id "Ledus.S1G331700"
Ledus.S1	AUGUSTUS	exon	27684883	27685388	.	-	.	transcript_id "Ledus.S1G331700.t1"; gene_id "Ledus.S1G331700"
Ledus.S1	AUGUSTUS	start_codon	27685386	27685388	.	-	0	transcript_id "Ledus.S1G331700.t1"; gene_id "Ledus.S1G331700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7447.t1 is derived from g12118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2745715	2746017	.	-	.	Ledus.S5G022500
Ledus.S5	AUGUSTUS	transcript	2745715	2746017	.	-	.	transcript_id "Ledus.S5G022500.t1"; gene_id "Ledus.S5G022500"
Ledus.S5	AUGUSTUS	stop_codon	2745712	2745714	.	-	0	transcript_id "Ledus.S5G022500.t1"; gene_id "Ledus.S5G022500"
Ledus.S5	AUGUSTUS	CDS	2745715	2746017	0.79	-	0	transcript_id "Ledus.S5G022500.t1"; gene_id "Ledus.S5G022500"
Ledus.S5	AUGUSTUS	exon	2745715	2746017	.	-	.	transcript_id "Ledus.S5G022500.t1"; gene_id "Ledus.S5G022500"
Ledus.S5	AUGUSTUS	start_codon	2746015	2746017	.	-	0	transcript_id "Ledus.S5G022500.t1"; gene_id "Ledus.S5G022500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11135.t1 is derived from g4753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2115402	2117097	.	+	.	Ledus.S4G029100
Ledus.S4	AUGUSTUS	transcript	2115402	2117097	.	+	.	transcript_id "Ledus.S4G029100.t1"; gene_id "Ledus.S4G029100"
Ledus.S4	AUGUSTUS	start_codon	2115402	2115404	.	+	0	transcript_id "Ledus.S4G029100.t1"; gene_id "Ledus.S4G029100"
Ledus.S4	AUGUSTUS	CDS	2115402	2115541	0.53	+	0	transcript_id "Ledus.S4G029100.t1"; gene_id "Ledus.S4G029100"
Ledus.S4	AUGUSTUS	exon	2115402	2115541	.	+	.	transcript_id "Ledus.S4G029100.t1"; gene_id "Ledus.S4G029100"
Ledus.S4	AUGUSTUS	intron	2115542	2115815	.	+	.	transcript_id "Ledus.S4G029100.t1"; gene_id "Ledus.S4G029100"
Ledus.S4	AUGUSTUS	CDS	2115816	2117097	0.78	+	1	transcript_id "Ledus.S4G029100.t1"; gene_id "Ledus.S4G029100"
Ledus.S4	AUGUSTUS	exon	2115816	2117097	.	+	.	transcript_id "Ledus.S4G029100.t1"; gene_id "Ledus.S4G029100"
Ledus.S4	AUGUSTUS	stop_codon	2117098	2117100	.	+	0	transcript_id "Ledus.S4G029100.t1"; gene_id "Ledus.S4G029100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10253.t1 is derived from g11283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13831811	13832149	.	+	.	Ledus.S3G173000
Ledus.S3	AUGUSTUS	transcript	13831811	13832149	.	+	.	transcript_id "Ledus.S3G173000.t1"; gene_id "Ledus.S3G173000"
Ledus.S3	AUGUSTUS	start_codon	13831811	13831813	.	+	0	transcript_id "Ledus.S3G173000.t1"; gene_id "Ledus.S3G173000"
Ledus.S3	AUGUSTUS	CDS	13831811	13832149	0.89	+	0	transcript_id "Ledus.S3G173000.t1"; gene_id "Ledus.S3G173000"
Ledus.S3	AUGUSTUS	exon	13831811	13832149	.	+	.	transcript_id "Ledus.S3G173000.t1"; gene_id "Ledus.S3G173000"
Ledus.S3	AUGUSTUS	stop_codon	13832150	13832152	.	+	0	transcript_id "Ledus.S3G173000.t1"; gene_id "Ledus.S3G173000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8296.t1 is derived from g12967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10540130	10542204	.	+	.	Ledus.S5G107400
Ledus.S5	AUGUSTUS	transcript	10540130	10542204	.	+	.	transcript_id "Ledus.S5G107400.t1"; gene_id "Ledus.S5G107400"
Ledus.S5	AUGUSTUS	start_codon	10540130	10540132	.	+	0	transcript_id "Ledus.S5G107400.t1"; gene_id "Ledus.S5G107400"
Ledus.S5	AUGUSTUS	CDS	10540130	10541223	0.66	+	0	transcript_id "Ledus.S5G107400.t1"; gene_id "Ledus.S5G107400"
Ledus.S5	AUGUSTUS	exon	10540130	10541223	.	+	.	transcript_id "Ledus.S5G107400.t1"; gene_id "Ledus.S5G107400"
Ledus.S5	AUGUSTUS	intron	10541224	10541684	.	+	.	transcript_id "Ledus.S5G107400.t1"; gene_id "Ledus.S5G107400"
Ledus.S5	AUGUSTUS	CDS	10541685	10542204	0.45	+	1	transcript_id "Ledus.S5G107400.t1"; gene_id "Ledus.S5G107400"
Ledus.S5	AUGUSTUS	exon	10541685	10542204	.	+	.	transcript_id "Ledus.S5G107400.t1"; gene_id "Ledus.S5G107400"
Ledus.S5	AUGUSTUS	stop_codon	10542205	10542207	.	+	0	transcript_id "Ledus.S5G107400.t1"; gene_id "Ledus.S5G107400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7457.t1 is derived from g12128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2859289	2861147	.	+	.	Ledus.S5G023500
Ledus.S5	AUGUSTUS	transcript	2859289	2861147	.	+	.	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	start_codon	2859289	2859291	.	+	0	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	CDS	2859289	2860008	0.2	+	0	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	exon	2859289	2860008	.	+	.	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	intron	2860009	2860107	.	+	.	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	CDS	2860108	2860257	1	+	0	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	exon	2860108	2860257	.	+	.	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	intron	2860258	2860345	.	+	.	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	CDS	2860346	2860568	0.98	+	0	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	exon	2860346	2860568	.	+	.	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	intron	2860569	2860992	.	+	.	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	CDS	2860993	2861007	0.75	+	2	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	exon	2860993	2861007	.	+	.	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	intron	2861008	2861103	.	+	.	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	CDS	2861104	2861147	1	+	2	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	exon	2861104	2861147	.	+	.	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
Ledus.S5	AUGUSTUS	stop_codon	2861148	2861150	.	+	0	transcript_id "Ledus.S5G023500.t1"; gene_id "Ledus.S5G023500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3681.t1 is derived from g1117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10628767	10633432	.	+	.	Ledus.S1G110200
Ledus.S1	AUGUSTUS	transcript	10628767	10633432	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	start_codon	10628767	10628769	.	+	0	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10628767	10628980	0.48	+	0	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10628767	10628980	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10628981	10629083	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10629084	10629154	0.97	+	2	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10629084	10629154	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10629155	10629247	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10629248	10629382	1	+	0	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10629248	10629382	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10629383	10629531	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10629532	10629726	1	+	0	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10629532	10629726	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10629727	10629813	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10629814	10629918	0.71	+	0	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10629814	10629918	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10629919	10630019	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10630020	10630079	0.89	+	0	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10630020	10630079	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10630080	10630194	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10630195	10630758	0.99	+	0	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10630195	10630758	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10630759	10630901	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10630902	10631007	1	+	0	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10630902	10631007	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10631008	10631139	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10631140	10631619	0.99	+	2	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10631140	10631619	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10631620	10631761	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10631762	10631809	1	+	2	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10631762	10631809	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10631810	10631899	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10631900	10632227	0.89	+	2	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10631900	10632227	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10632228	10632396	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10632397	10633226	1	+	1	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10632397	10633226	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10633227	10633319	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10633320	10633432	1	+	2	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10633320	10633432	.	+	.	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	stop_codon	10633433	10633435	.	+	0	transcript_id "Ledus.S1G110200.t1"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	transcript	10628767	10633432	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	start_codon	10628767	10628769	.	+	0	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10628767	10629154	0.4	+	0	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10628767	10629154	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10629155	10629233	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10629234	10629382	0.99	+	2	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10629234	10629382	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10629383	10629531	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10629532	10629726	1	+	0	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10629532	10629726	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10629727	10629813	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10629814	10629918	0.67	+	0	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10629814	10629918	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10629919	10630019	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10630020	10630079	0.83	+	0	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10630020	10630079	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10630080	10630194	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10630195	10630758	0.97	+	0	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10630195	10630758	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10630759	10630901	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10630902	10631007	1	+	0	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10630902	10631007	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10631008	10631139	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10631140	10631619	0.98	+	2	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10631140	10631619	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10631620	10631761	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10631762	10631809	1	+	2	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10631762	10631809	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10631810	10631899	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10631900	10632227	0.81	+	2	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10631900	10632227	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10632228	10632396	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10632397	10633226	0.96	+	1	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10632397	10633226	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	intron	10633227	10633319	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	CDS	10633320	10633432	1	+	2	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	exon	10633320	10633432	.	+	.	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
Ledus.S1	AUGUSTUS	stop_codon	10633433	10633435	.	+	0	transcript_id "Ledus.S1G110200.t2"; gene_id "Ledus.S1G110200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10184.t1 is derived from g11214.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13480188	13482731	.	+	.	Ledus.S3G166100
Ledus.S3	AUGUSTUS	transcript	13480188	13482731	.	+	.	transcript_id "Ledus.S3G166100.t1"; gene_id "Ledus.S3G166100"
Ledus.S3	AUGUSTUS	start_codon	13480188	13480190	.	+	0	transcript_id "Ledus.S3G166100.t1"; gene_id "Ledus.S3G166100"
Ledus.S3	AUGUSTUS	CDS	13480188	13482353	0.99	+	0	transcript_id "Ledus.S3G166100.t1"; gene_id "Ledus.S3G166100"
Ledus.S3	AUGUSTUS	exon	13480188	13482353	.	+	.	transcript_id "Ledus.S3G166100.t1"; gene_id "Ledus.S3G166100"
Ledus.S3	AUGUSTUS	intron	13482354	13482461	.	+	.	transcript_id "Ledus.S3G166100.t1"; gene_id "Ledus.S3G166100"
Ledus.S3	AUGUSTUS	CDS	13482462	13482731	0.94	+	0	transcript_id "Ledus.S3G166100.t1"; gene_id "Ledus.S3G166100"
Ledus.S3	AUGUSTUS	exon	13482462	13482731	.	+	.	transcript_id "Ledus.S3G166100.t1"; gene_id "Ledus.S3G166100"
Ledus.S3	AUGUSTUS	stop_codon	13482732	13482734	.	+	0	transcript_id "Ledus.S3G166100.t1"; gene_id "Ledus.S3G166100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12869.t1 is derived from g4442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	135374	138902	.	+	.	Ledus.C10G001200
Ledus.C10	AUGUSTUS	transcript	135374	138902	.	+	.	transcript_id "Ledus.C10G001200.t1"; gene_id "Ledus.C10G001200"
Ledus.C10	AUGUSTUS	start_codon	135374	135376	.	+	0	transcript_id "Ledus.C10G001200.t1"; gene_id "Ledus.C10G001200"
Ledus.C10	AUGUSTUS	CDS	135374	135671	0.94	+	0	transcript_id "Ledus.C10G001200.t1"; gene_id "Ledus.C10G001200"
Ledus.C10	AUGUSTUS	exon	135374	135671	.	+	.	transcript_id "Ledus.C10G001200.t1"; gene_id "Ledus.C10G001200"
Ledus.C10	AUGUSTUS	intron	135672	135804	.	+	.	transcript_id "Ledus.C10G001200.t1"; gene_id "Ledus.C10G001200"
Ledus.C10	AUGUSTUS	CDS	135805	138902	1	+	2	transcript_id "Ledus.C10G001200.t1"; gene_id "Ledus.C10G001200"
Ledus.C10	AUGUSTUS	exon	135805	138902	.	+	.	transcript_id "Ledus.C10G001200.t1"; gene_id "Ledus.C10G001200"
Ledus.C10	AUGUSTUS	stop_codon	138903	138905	.	+	0	transcript_id "Ledus.C10G001200.t1"; gene_id "Ledus.C10G001200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4011.t1 is derived from g1447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14069673	14071256	.	-	.	Ledus.S1G143200
Ledus.S1	AUGUSTUS	transcript	14069673	14071256	.	-	.	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	stop_codon	14069670	14069672	.	-	0	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	CDS	14069673	14069825	0.86	-	0	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	exon	14069673	14069825	.	-	.	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	intron	14069826	14069915	.	-	.	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	CDS	14069916	14070274	1	-	2	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	exon	14069916	14070274	.	-	.	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	intron	14070275	14070362	.	-	.	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	CDS	14070363	14070894	1	-	0	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	exon	14070363	14070894	.	-	.	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	intron	14070895	14070988	.	-	.	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	CDS	14070989	14071069	1	-	0	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	exon	14070989	14071069	.	-	.	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	intron	14071070	14071148	.	-	.	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	CDS	14071149	14071256	0.81	-	0	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	exon	14071149	14071256	.	-	.	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
Ledus.S1	AUGUSTUS	start_codon	14071254	14071256	.	-	0	transcript_id "Ledus.S1G143200.t1"; gene_id "Ledus.S1G143200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3925.t1 is derived from g1361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13577439	13578453	.	+	.	Ledus.S1G134600
Ledus.S1	AUGUSTUS	transcript	13577439	13578453	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	start_codon	13577439	13577441	.	+	0	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	CDS	13577439	13577463	0.53	+	0	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	exon	13577439	13577463	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	intron	13577464	13577549	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	CDS	13577550	13577610	1	+	2	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	exon	13577550	13577610	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	intron	13577611	13577686	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	CDS	13577687	13577769	1	+	1	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	exon	13577687	13577769	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	intron	13577770	13577870	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	CDS	13577871	13577965	1	+	2	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	exon	13577871	13577965	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	intron	13577966	13578091	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	CDS	13578092	13578137	1	+	0	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	exon	13578092	13578137	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	intron	13578138	13578219	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	CDS	13578220	13578299	1	+	2	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	exon	13578220	13578299	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	intron	13578300	13578378	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	CDS	13578379	13578453	0.94	+	0	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	exon	13578379	13578453	.	+	.	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
Ledus.S1	AUGUSTUS	stop_codon	13578454	13578456	.	+	0	transcript_id "Ledus.S1G134600.t1"; gene_id "Ledus.S1G134600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11965.t1 is derived from g5584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8052107	8053248	.	+	.	Ledus.S4G112100
Ledus.S4	AUGUSTUS	transcript	8052107	8053248	.	+	.	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	start_codon	8052107	8052109	.	+	0	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	CDS	8052107	8052348	0.7	+	0	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	exon	8052107	8052348	.	+	.	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	intron	8052349	8052461	.	+	.	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	CDS	8052462	8052524	1	+	1	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	exon	8052462	8052524	.	+	.	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	intron	8052525	8052655	.	+	.	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	CDS	8052656	8052732	1	+	1	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	exon	8052656	8052732	.	+	.	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	intron	8052733	8052823	.	+	.	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	CDS	8052824	8052954	1	+	2	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	exon	8052824	8052954	.	+	.	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	intron	8052955	8053035	.	+	.	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	CDS	8053036	8053248	1	+	0	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	exon	8053036	8053248	.	+	.	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
Ledus.S4	AUGUSTUS	stop_codon	8053249	8053251	.	+	0	transcript_id "Ledus.S4G112100.t1"; gene_id "Ledus.S4G112100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8796.t1 is derived from g9826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2027786	2033264	.	+	.	Ledus.S3G027300
Ledus.S3	AUGUSTUS	transcript	2027786	2033264	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	start_codon	2027786	2027788	.	+	0	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2027786	2027824	0.7	+	0	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2027786	2027824	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2027825	2028044	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2028045	2028235	0.82	+	0	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2028045	2028235	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2028236	2028319	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2028320	2028698	1	+	1	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2028320	2028698	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2028699	2028771	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2028772	2028879	1	+	0	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2028772	2028879	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2028880	2028966	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2028967	2029016	1	+	0	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2028967	2029016	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2029017	2029099	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2029100	2029189	1	+	1	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2029100	2029189	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2029190	2029282	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2029283	2029366	1	+	1	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2029283	2029366	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2029367	2029465	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2029466	2029525	1	+	1	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2029466	2029525	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2029526	2029608	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2029609	2029697	0.91	+	1	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2029609	2029697	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2029698	2029784	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2029785	2029915	0.91	+	2	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2029785	2029915	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2029916	2029995	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2029996	2030129	1	+	0	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2029996	2030129	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2030130	2030229	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2030230	2030357	1	+	1	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2030230	2030357	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2030358	2030453	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2030454	2030505	0.96	+	2	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2030454	2030505	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2030506	2030609	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2030610	2030751	1	+	1	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2030610	2030751	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2030752	2030842	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2030843	2031033	1	+	0	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2030843	2031033	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2031034	2031119	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2031120	2031297	1	+	1	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2031120	2031297	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2031298	2031396	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2031397	2031678	1	+	0	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2031397	2031678	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2031679	2031766	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2031767	2032400	1	+	0	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2031767	2032400	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2032401	2032547	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2032548	2032893	1	+	2	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2032548	2032893	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	intron	2032894	2032975	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	CDS	2032976	2033264	1	+	1	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	exon	2032976	2033264	.	+	.	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
Ledus.S3	AUGUSTUS	stop_codon	2033265	2033267	.	+	0	transcript_id "Ledus.S3G027300.t1"; gene_id "Ledus.S3G027300"
# This transcript jg11860.t2 is derived from g5479.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11860.t3 is derived from g5479.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11860.t4 is derived from g5479.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11861.t1 is derived from g5480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7404662	7406067	.	-	.	Ledus.S4G101700
Ledus.S4	AUGUSTUS	transcript	7404662	7406067	.	-	.	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	stop_codon	7404659	7404661	.	-	0	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	CDS	7404662	7405046	1	-	1	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	exon	7404662	7405046	.	-	.	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	intron	7405047	7405138	.	-	.	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	CDS	7405139	7405221	1	-	0	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	exon	7405139	7405221	.	-	.	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	intron	7405222	7405321	.	-	.	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	CDS	7405322	7405669	1	-	0	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	exon	7405322	7405669	.	-	.	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	intron	7405670	7405743	.	-	.	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	CDS	7405744	7406067	0.34	-	0	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	exon	7405744	7406067	.	-	.	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
Ledus.S4	AUGUSTUS	start_codon	7406065	7406067	.	-	0	transcript_id "Ledus.S4G101700.t1"; gene_id "Ledus.S4G101700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11233.t1 is derived from g4851.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2846872	2852634	.	+	.	Ledus.S4G038900
Ledus.S4	AUGUSTUS	transcript	2852205	2852634	.	+	.	transcript_id "Ledus.S4G038900.t1"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	start_codon	2852205	2852207	.	+	0	transcript_id "Ledus.S4G038900.t1"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2852205	2852312	0.79	+	0	transcript_id "Ledus.S4G038900.t1"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2852205	2852312	.	+	.	transcript_id "Ledus.S4G038900.t1"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2852313	2852481	.	+	.	transcript_id "Ledus.S4G038900.t1"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2852482	2852634	0.97	+	0	transcript_id "Ledus.S4G038900.t1"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2852482	2852634	.	+	.	transcript_id "Ledus.S4G038900.t1"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	stop_codon	2852635	2852637	.	+	0	transcript_id "Ledus.S4G038900.t1"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	transcript	2846872	2851343	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	start_codon	2846872	2846874	.	+	0	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2846872	2846969	0.77	+	0	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2846872	2846969	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2846970	2847075	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2847076	2847173	0.84	+	1	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2847076	2847173	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2847174	2847312	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2847313	2847410	1	+	2	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2847313	2847410	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2847411	2847495	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2847496	2847557	1	+	0	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2847496	2847557	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2847558	2847733	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2847734	2847892	0.6	+	1	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2847734	2847892	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2847893	2847962	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2847963	2847998	0.62	+	1	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2847963	2847998	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2847999	2848128	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2848129	2848227	0.78	+	1	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2848129	2848227	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2848228	2848393	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2848394	2848517	1	+	1	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2848394	2848517	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2848518	2848720	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2848721	2848889	0.99	+	0	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2848721	2848889	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2848890	2848990	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2848991	2849122	1	+	2	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2848991	2849122	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2849123	2849307	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2849308	2849376	1	+	2	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2849308	2849376	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2849377	2849516	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2849517	2849661	1	+	2	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2849517	2849661	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2849662	2849835	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2849836	2849881	1	+	1	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2849836	2849881	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2849882	2850132	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2850133	2850240	1	+	0	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2850133	2850240	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2850241	2850333	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2850334	2850438	1	+	0	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2850334	2850438	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2850439	2850535	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2850536	2850777	1	+	0	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2850536	2850777	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2850778	2850899	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2850900	2851125	0.99	+	1	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2850900	2851125	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2851126	2851316	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2851317	2851343	1	+	0	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2851317	2851343	.	+	.	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	stop_codon	2851344	2851346	.	+	0	transcript_id "Ledus.S4G038900.t2"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	transcript	2846872	2852634	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	start_codon	2846872	2846874	.	+	0	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2846872	2846969	0.8	+	0	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2846872	2846969	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2846970	2847075	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2847076	2847173	0.77	+	1	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2847076	2847173	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2847174	2847312	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2847313	2847410	1	+	2	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2847313	2847410	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2847411	2847495	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2847496	2847557	1	+	0	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2847496	2847557	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2847558	2847733	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2847734	2847892	0.73	+	1	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2847734	2847892	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2847893	2847962	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2847963	2847998	0.54	+	1	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2847963	2847998	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2847999	2848128	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2848129	2848227	0.69	+	1	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2848129	2848227	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2848228	2848393	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2848394	2848517	0.98	+	1	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2848394	2848517	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2848518	2848720	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2848721	2848889	0.98	+	0	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2848721	2848889	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2848890	2848990	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2848991	2849122	1	+	2	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2848991	2849122	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2849123	2849307	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2849308	2849376	1	+	2	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2849308	2849376	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2849377	2849516	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2849517	2849661	1	+	2	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2849517	2849661	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2849662	2849835	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2849836	2849881	1	+	1	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2849836	2849881	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2849882	2850132	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2850133	2850240	1	+	0	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2850133	2850240	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2850241	2850333	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2850334	2850438	1	+	0	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2850334	2850438	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2850439	2850535	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2850536	2850777	1	+	0	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2850536	2850777	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2850778	2850899	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2850900	2851125	0.98	+	1	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2850900	2851125	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2851126	2851324	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2851325	2851473	0.55	+	0	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2851325	2851473	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2851474	2851552	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2851553	2851616	0.24	+	1	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2851553	2851616	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2851617	2851971	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2851972	2852055	0.28	+	0	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2851972	2852055	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2852056	2852180	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2852181	2852312	0.95	+	0	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2852181	2852312	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	intron	2852313	2852481	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	CDS	2852482	2852634	0.94	+	0	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	exon	2852482	2852634	.	+	.	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
Ledus.S4	AUGUSTUS	stop_codon	2852635	2852637	.	+	0	transcript_id "Ledus.S4G038900.t3"; gene_id "Ledus.S4G038900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5509.t1 is derived from g2948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24704381	24704698	.	+	.	Ledus.S1G293000
Ledus.S1	AUGUSTUS	transcript	24704381	24704698	.	+	.	transcript_id "Ledus.S1G293000.t1"; gene_id "Ledus.S1G293000"
Ledus.S1	AUGUSTUS	start_codon	24704381	24704383	.	+	0	transcript_id "Ledus.S1G293000.t1"; gene_id "Ledus.S1G293000"
Ledus.S1	AUGUSTUS	CDS	24704381	24704698	0.97	+	0	transcript_id "Ledus.S1G293000.t1"; gene_id "Ledus.S1G293000"
Ledus.S1	AUGUSTUS	exon	24704381	24704698	.	+	.	transcript_id "Ledus.S1G293000.t1"; gene_id "Ledus.S1G293000"
Ledus.S1	AUGUSTUS	stop_codon	24704699	24704701	.	+	0	transcript_id "Ledus.S1G293000.t1"; gene_id "Ledus.S1G293000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10630.t1 is derived from g11660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16589831	16590853	.	-	.	Ledus.S3G210700
Ledus.S3	AUGUSTUS	transcript	16589831	16590853	.	-	.	transcript_id "Ledus.S3G210700.t1"; gene_id "Ledus.S3G210700"
Ledus.S3	AUGUSTUS	stop_codon	16589828	16589830	.	-	0	transcript_id "Ledus.S3G210700.t1"; gene_id "Ledus.S3G210700"
Ledus.S3	AUGUSTUS	CDS	16589831	16590853	0.61	-	0	transcript_id "Ledus.S3G210700.t1"; gene_id "Ledus.S3G210700"
Ledus.S3	AUGUSTUS	exon	16589831	16590853	.	-	.	transcript_id "Ledus.S3G210700.t1"; gene_id "Ledus.S3G210700"
Ledus.S3	AUGUSTUS	start_codon	16590851	16590853	.	-	0	transcript_id "Ledus.S3G210700.t1"; gene_id "Ledus.S3G210700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7782.t1 is derived from g12453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6543447	6545424	.	+	.	Ledus.S5G056000
Ledus.S5	AUGUSTUS	transcript	6543447	6545424	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	start_codon	6543447	6543449	.	+	0	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	CDS	6543447	6543612	0.96	+	0	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	exon	6543447	6543612	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	intron	6543613	6543755	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	CDS	6543756	6543871	1	+	2	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	exon	6543756	6543871	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	intron	6543872	6544081	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	CDS	6544082	6544200	1	+	0	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	exon	6544082	6544200	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	intron	6544201	6544279	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	CDS	6544280	6544433	1	+	1	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	exon	6544280	6544433	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	intron	6544434	6544559	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	CDS	6544560	6544671	1	+	0	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	exon	6544560	6544671	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	intron	6544672	6544835	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	CDS	6544836	6544960	0.61	+	2	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	exon	6544836	6544960	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	intron	6544961	6545076	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	CDS	6545077	6545195	0.82	+	0	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	exon	6545077	6545195	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	intron	6545196	6545288	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	CDS	6545289	6545424	0.94	+	1	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	exon	6545289	6545424	.	+	.	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
Ledus.S5	AUGUSTUS	stop_codon	6545425	6545427	.	+	0	transcript_id "Ledus.S5G056000.t1"; gene_id "Ledus.S5G056000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11773.t1 is derived from g5392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6707184	6707990	.	-	.	Ledus.S4G092900
Ledus.S4	AUGUSTUS	transcript	6707184	6707990	.	-	.	transcript_id "Ledus.S4G092900.t1"; gene_id "Ledus.S4G092900"
Ledus.S4	AUGUSTUS	stop_codon	6707181	6707183	.	-	0	transcript_id "Ledus.S4G092900.t1"; gene_id "Ledus.S4G092900"
Ledus.S4	AUGUSTUS	CDS	6707184	6707247	0.69	-	1	transcript_id "Ledus.S4G092900.t1"; gene_id "Ledus.S4G092900"
Ledus.S4	AUGUSTUS	exon	6707184	6707247	.	-	.	transcript_id "Ledus.S4G092900.t1"; gene_id "Ledus.S4G092900"
Ledus.S4	AUGUSTUS	intron	6707248	6707454	.	-	.	transcript_id "Ledus.S4G092900.t1"; gene_id "Ledus.S4G092900"
Ledus.S4	AUGUSTUS	CDS	6707455	6707990	0.71	-	0	transcript_id "Ledus.S4G092900.t1"; gene_id "Ledus.S4G092900"
Ledus.S4	AUGUSTUS	exon	6707455	6707990	.	-	.	transcript_id "Ledus.S4G092900.t1"; gene_id "Ledus.S4G092900"
Ledus.S4	AUGUSTUS	start_codon	6707988	6707990	.	-	0	transcript_id "Ledus.S4G092900.t1"; gene_id "Ledus.S4G092900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8206.t1 is derived from g12877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9847572	9848342	.	+	.	Ledus.S5G098400
Ledus.S5	AUGUSTUS	transcript	9847572	9848342	.	+	.	transcript_id "Ledus.S5G098400.t1"; gene_id "Ledus.S5G098400"
Ledus.S5	AUGUSTUS	start_codon	9847572	9847574	.	+	0	transcript_id "Ledus.S5G098400.t1"; gene_id "Ledus.S5G098400"
Ledus.S5	AUGUSTUS	CDS	9847572	9847924	0.58	+	0	transcript_id "Ledus.S5G098400.t1"; gene_id "Ledus.S5G098400"
Ledus.S5	AUGUSTUS	exon	9847572	9847924	.	+	.	transcript_id "Ledus.S5G098400.t1"; gene_id "Ledus.S5G098400"
Ledus.S5	AUGUSTUS	intron	9847925	9848023	.	+	.	transcript_id "Ledus.S5G098400.t1"; gene_id "Ledus.S5G098400"
Ledus.S5	AUGUSTUS	CDS	9848024	9848342	1	+	1	transcript_id "Ledus.S5G098400.t1"; gene_id "Ledus.S5G098400"
Ledus.S5	AUGUSTUS	exon	9848024	9848342	.	+	.	transcript_id "Ledus.S5G098400.t1"; gene_id "Ledus.S5G098400"
Ledus.S5	AUGUSTUS	stop_codon	9848343	9848345	.	+	0	transcript_id "Ledus.S5G098400.t1"; gene_id "Ledus.S5G098400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5862.t1 is derived from g3304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27396833	27400779	.	+	.	Ledus.S1G328300
Ledus.S1	AUGUSTUS	transcript	27396833	27400779	.	+	.	transcript_id "Ledus.S1G328300.t1"; gene_id "Ledus.S1G328300"
Ledus.S1	AUGUSTUS	start_codon	27396833	27396835	.	+	0	transcript_id "Ledus.S1G328300.t1"; gene_id "Ledus.S1G328300"
Ledus.S1	AUGUSTUS	CDS	27396833	27397603	0.96	+	0	transcript_id "Ledus.S1G328300.t1"; gene_id "Ledus.S1G328300"
Ledus.S1	AUGUSTUS	exon	27396833	27397603	.	+	.	transcript_id "Ledus.S1G328300.t1"; gene_id "Ledus.S1G328300"
Ledus.S1	AUGUSTUS	intron	27397604	27397716	.	+	.	transcript_id "Ledus.S1G328300.t1"; gene_id "Ledus.S1G328300"
Ledus.S1	AUGUSTUS	CDS	27397717	27400779	0.95	+	0	transcript_id "Ledus.S1G328300.t1"; gene_id "Ledus.S1G328300"
Ledus.S1	AUGUSTUS	exon	27397717	27400779	.	+	.	transcript_id "Ledus.S1G328300.t1"; gene_id "Ledus.S1G328300"
Ledus.S1	AUGUSTUS	stop_codon	27400780	27400782	.	+	0	transcript_id "Ledus.S1G328300.t1"; gene_id "Ledus.S1G328300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3075.t1 is derived from g510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5709183	5711021	.	+	.	Ledus.S1G049600
Ledus.S1	AUGUSTUS	transcript	5709183	5711021	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	start_codon	5709183	5709185	.	+	0	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	CDS	5709183	5709228	0.65	+	0	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	exon	5709183	5709228	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	intron	5709229	5709324	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	CDS	5709325	5709430	1	+	2	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	exon	5709325	5709430	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	intron	5709431	5709672	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	CDS	5709673	5709752	1	+	1	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	exon	5709673	5709752	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	intron	5709753	5709979	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	CDS	5709980	5710080	1	+	2	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	exon	5709980	5710080	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	intron	5710081	5710322	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	CDS	5710323	5710418	1	+	0	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	exon	5710323	5710418	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	intron	5710419	5710499	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	CDS	5710500	5710567	1	+	0	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	exon	5710500	5710567	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	intron	5710568	5710658	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	CDS	5710659	5710701	0.97	+	1	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	exon	5710659	5710701	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	intron	5710702	5710806	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	CDS	5710807	5710894	0.95	+	0	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	exon	5710807	5710894	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	intron	5710895	5710974	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	CDS	5710975	5711021	0.95	+	2	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	exon	5710975	5711021	.	+	.	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
Ledus.S1	AUGUSTUS	stop_codon	5711022	5711024	.	+	0	transcript_id "Ledus.S1G049600.t1"; gene_id "Ledus.S1G049600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10827.t1 is derived from g11859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18082495	18083767	.	+	.	Ledus.S3G230400
Ledus.S3	AUGUSTUS	transcript	18082495	18083767	.	+	.	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	start_codon	18082495	18082497	.	+	0	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	CDS	18082495	18082713	0.85	+	0	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	exon	18082495	18082713	.	+	.	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	intron	18082714	18082796	.	+	.	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	CDS	18082797	18082965	0.97	+	0	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	exon	18082797	18082965	.	+	.	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	intron	18082966	18083146	.	+	.	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	CDS	18083147	18083297	0.71	+	2	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	exon	18083147	18083297	.	+	.	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	intron	18083298	18083439	.	+	.	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	CDS	18083440	18083500	0.94	+	1	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	exon	18083440	18083500	.	+	.	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	intron	18083501	18083647	.	+	.	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	CDS	18083648	18083767	0.78	+	0	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	exon	18083648	18083767	.	+	.	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
Ledus.S3	AUGUSTUS	stop_codon	18083768	18083770	.	+	0	transcript_id "Ledus.S3G230400.t1"; gene_id "Ledus.S3G230400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12300.t1 is derived from g5920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11107945	11108514	.	-	.	Ledus.S4G145600
Ledus.S4	AUGUSTUS	transcript	11107945	11108514	.	-	.	transcript_id "Ledus.S4G145600.t1"; gene_id "Ledus.S4G145600"
Ledus.S4	AUGUSTUS	stop_codon	11107942	11107944	.	-	0	transcript_id "Ledus.S4G145600.t1"; gene_id "Ledus.S4G145600"
Ledus.S4	AUGUSTUS	CDS	11107945	11108514	0.99	-	0	transcript_id "Ledus.S4G145600.t1"; gene_id "Ledus.S4G145600"
Ledus.S4	AUGUSTUS	exon	11107945	11108514	.	-	.	transcript_id "Ledus.S4G145600.t1"; gene_id "Ledus.S4G145600"
Ledus.S4	AUGUSTUS	start_codon	11108512	11108514	.	-	0	transcript_id "Ledus.S4G145600.t1"; gene_id "Ledus.S4G145600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6594.t1 is derived from g4037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32573502	32574362	.	+	.	Ledus.S1G401500
Ledus.S1	AUGUSTUS	transcript	32573502	32574362	.	+	.	transcript_id "Ledus.S1G401500.t1"; gene_id "Ledus.S1G401500"
Ledus.S1	AUGUSTUS	start_codon	32573502	32573504	.	+	0	transcript_id "Ledus.S1G401500.t1"; gene_id "Ledus.S1G401500"
Ledus.S1	AUGUSTUS	CDS	32573502	32573885	0.8	+	0	transcript_id "Ledus.S1G401500.t1"; gene_id "Ledus.S1G401500"
Ledus.S1	AUGUSTUS	exon	32573502	32573885	.	+	.	transcript_id "Ledus.S1G401500.t1"; gene_id "Ledus.S1G401500"
Ledus.S1	AUGUSTUS	intron	32573886	32573999	.	+	.	transcript_id "Ledus.S1G401500.t1"; gene_id "Ledus.S1G401500"
Ledus.S1	AUGUSTUS	CDS	32574000	32574188	1	+	0	transcript_id "Ledus.S1G401500.t1"; gene_id "Ledus.S1G401500"
Ledus.S1	AUGUSTUS	exon	32574000	32574188	.	+	.	transcript_id "Ledus.S1G401500.t1"; gene_id "Ledus.S1G401500"
Ledus.S1	AUGUSTUS	intron	32574189	32574269	.	+	.	transcript_id "Ledus.S1G401500.t1"; gene_id "Ledus.S1G401500"
Ledus.S1	AUGUSTUS	CDS	32574270	32574362	0.72	+	0	transcript_id "Ledus.S1G401500.t1"; gene_id "Ledus.S1G401500"
Ledus.S1	AUGUSTUS	exon	32574270	32574362	.	+	.	transcript_id "Ledus.S1G401500.t1"; gene_id "Ledus.S1G401500"
Ledus.S1	AUGUSTUS	stop_codon	32574363	32574365	.	+	0	transcript_id "Ledus.S1G401500.t1"; gene_id "Ledus.S1G401500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1281.t1 is derived from g8142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9041160	9041951	.	-	.	Ledus.S2G116300
Ledus.S2	AUGUSTUS	transcript	9041160	9041951	.	-	.	transcript_id "Ledus.S2G116300.t1"; gene_id "Ledus.S2G116300"
Ledus.S2	AUGUSTUS	stop_codon	9041157	9041159	.	-	0	transcript_id "Ledus.S2G116300.t1"; gene_id "Ledus.S2G116300"
Ledus.S2	AUGUSTUS	CDS	9041160	9041951	0.99	-	0	transcript_id "Ledus.S2G116300.t1"; gene_id "Ledus.S2G116300"
Ledus.S2	AUGUSTUS	exon	9041160	9041951	.	-	.	transcript_id "Ledus.S2G116300.t1"; gene_id "Ledus.S2G116300"
Ledus.S2	AUGUSTUS	start_codon	9041949	9041951	.	-	0	transcript_id "Ledus.S2G116300.t1"; gene_id "Ledus.S2G116300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5115.t1 is derived from g2554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21781143	21785261	.	-	.	Ledus.S1G253600
Ledus.S1	AUGUSTUS	transcript	21781143	21785261	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	stop_codon	21781140	21781142	.	-	0	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	CDS	21781143	21781197	0.24	-	1	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	exon	21781143	21781197	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	intron	21781198	21781311	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	CDS	21781312	21781814	0.63	-	0	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	exon	21781312	21781814	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	intron	21781815	21781972	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	CDS	21781973	21782459	0.9	-	1	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	exon	21781973	21782459	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	intron	21782460	21782616	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	CDS	21782617	21783221	0.89	-	0	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	exon	21782617	21783221	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	intron	21783222	21783371	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	CDS	21783372	21783428	1	-	0	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	exon	21783372	21783428	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	intron	21783429	21783554	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	CDS	21783555	21783748	0.98	-	2	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	exon	21783555	21783748	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	intron	21783749	21783834	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	CDS	21783835	21783946	1	-	0	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	exon	21783835	21783946	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	intron	21783947	21784058	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	CDS	21784059	21784145	1	-	0	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	exon	21784059	21784145	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	intron	21784146	21784240	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	CDS	21784241	21784324	1	-	0	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	exon	21784241	21784324	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	intron	21784325	21784524	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	CDS	21784525	21784623	0.77	-	0	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	exon	21784525	21784623	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	intron	21784624	21784712	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	CDS	21784713	21784942	1	-	2	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	exon	21784713	21784942	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	intron	21784943	21785062	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	CDS	21785063	21785261	0.92	-	0	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	exon	21785063	21785261	.	-	.	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
Ledus.S1	AUGUSTUS	start_codon	21785259	21785261	.	-	0	transcript_id "Ledus.S1G253600.t1"; gene_id "Ledus.S1G253600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8929.t1 is derived from g9959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3229571	3229891	.	+	.	Ledus.S3G040600
Ledus.S3	AUGUSTUS	transcript	3229571	3229891	.	+	.	transcript_id "Ledus.S3G040600.t1"; gene_id "Ledus.S3G040600"
Ledus.S3	AUGUSTUS	start_codon	3229571	3229573	.	+	0	transcript_id "Ledus.S3G040600.t1"; gene_id "Ledus.S3G040600"
Ledus.S3	AUGUSTUS	CDS	3229571	3229891	0.9	+	0	transcript_id "Ledus.S3G040600.t1"; gene_id "Ledus.S3G040600"
Ledus.S3	AUGUSTUS	exon	3229571	3229891	.	+	.	transcript_id "Ledus.S3G040600.t1"; gene_id "Ledus.S3G040600"
Ledus.S3	AUGUSTUS	stop_codon	3229892	3229894	.	+	0	transcript_id "Ledus.S3G040600.t1"; gene_id "Ledus.S3G040600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6469.t1 is derived from g3912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31409644	31409901	.	-	.	Ledus.S1G389000
Ledus.S1	AUGUSTUS	transcript	31409644	31409901	.	-	.	transcript_id "Ledus.S1G389000.t1"; gene_id "Ledus.S1G389000"
Ledus.S1	AUGUSTUS	stop_codon	31409641	31409643	.	-	0	transcript_id "Ledus.S1G389000.t1"; gene_id "Ledus.S1G389000"
Ledus.S1	AUGUSTUS	CDS	31409644	31409901	0.62	-	0	transcript_id "Ledus.S1G389000.t1"; gene_id "Ledus.S1G389000"
Ledus.S1	AUGUSTUS	exon	31409644	31409901	.	-	.	transcript_id "Ledus.S1G389000.t1"; gene_id "Ledus.S1G389000"
Ledus.S1	AUGUSTUS	start_codon	31409899	31409901	.	-	0	transcript_id "Ledus.S1G389000.t1"; gene_id "Ledus.S1G389000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5607.t1 is derived from g3046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25345847	25347270	.	-	.	Ledus.S1G302800
Ledus.S1	AUGUSTUS	transcript	25345847	25347270	.	-	.	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	stop_codon	25345844	25345846	.	-	0	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	CDS	25345847	25345891	0.99	-	0	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	exon	25345847	25345891	.	-	.	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	intron	25345892	25345976	.	-	.	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	CDS	25345977	25346367	1	-	1	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	exon	25345977	25346367	.	-	.	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	intron	25346368	25346595	.	-	.	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	CDS	25346596	25346759	1	-	0	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	exon	25346596	25346759	.	-	.	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	intron	25346760	25346901	.	-	.	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	CDS	25346902	25347270	0.88	-	0	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	exon	25346902	25347270	.	-	.	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
Ledus.S1	AUGUSTUS	start_codon	25347268	25347270	.	-	0	transcript_id "Ledus.S1G302800.t1"; gene_id "Ledus.S1G302800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5795.t1 is derived from g3237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26917835	26918278	.	+	.	Ledus.S1G321600
Ledus.S1	AUGUSTUS	transcript	26917835	26918278	.	+	.	transcript_id "Ledus.S1G321600.t1"; gene_id "Ledus.S1G321600"
Ledus.S1	AUGUSTUS	start_codon	26917835	26917837	.	+	0	transcript_id "Ledus.S1G321600.t1"; gene_id "Ledus.S1G321600"
Ledus.S1	AUGUSTUS	CDS	26917835	26918278	0.46	+	0	transcript_id "Ledus.S1G321600.t1"; gene_id "Ledus.S1G321600"
Ledus.S1	AUGUSTUS	exon	26917835	26918278	.	+	.	transcript_id "Ledus.S1G321600.t1"; gene_id "Ledus.S1G321600"
Ledus.S1	AUGUSTUS	stop_codon	26918279	26918281	.	+	0	transcript_id "Ledus.S1G321600.t1"; gene_id "Ledus.S1G321600"
# This transcript jg12073.t2 is derived from g5692.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12074.t1 is derived from g5693.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9346663	9349159	.	+	.	Ledus.S4G123000
Ledus.S4	AUGUSTUS	transcript	9346663	9349159	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	start_codon	9346663	9346665	.	+	0	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9346663	9346744	0.84	+	0	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9346663	9346744	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9346745	9346828	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9346829	9347001	1	+	2	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9346829	9347001	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9347002	9347149	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9347150	9347243	1	+	0	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9347150	9347243	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9347244	9347368	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9347369	9347457	1	+	2	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9347369	9347457	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9347458	9347556	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9347557	9347846	0.55	+	0	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9347557	9347846	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9347847	9347994	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9347995	9348101	0.48	+	1	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9347995	9348101	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9348102	9348733	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9348734	9348859	0.58	+	2	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9348734	9348859	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9348860	9349136	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9349137	9349159	0.78	+	2	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9349137	9349159	.	+	.	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	stop_codon	9349160	9349162	.	+	0	transcript_id "Ledus.S4G123000.t1"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	transcript	9346663	9349024	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	start_codon	9346663	9346665	.	+	0	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9346663	9346744	0.79	+	0	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9346663	9346744	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9346745	9346828	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9346829	9347001	1	+	2	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9346829	9347001	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9347002	9347149	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9347150	9347243	1	+	0	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9347150	9347243	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9347244	9347368	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9347369	9347457	1	+	2	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9347369	9347457	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9347458	9347556	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9347557	9347846	0.46	+	0	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9347557	9347846	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9347847	9347994	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9347995	9348101	0.54	+	1	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9347995	9348101	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9348102	9348733	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9348734	9348859	0.29	+	2	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9348734	9348859	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	intron	9348860	9348953	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	CDS	9348954	9349024	0.43	+	2	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	exon	9348954	9349024	.	+	.	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
Ledus.S4	AUGUSTUS	stop_codon	9349025	9349027	.	+	0	transcript_id "Ledus.S4G123000.t2"; gene_id "Ledus.S4G123000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2233.t1 is derived from g9096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16220934	16221281	.	+	.	Ledus.S2G211500
Ledus.S2	AUGUSTUS	transcript	16220934	16221281	.	+	.	transcript_id "Ledus.S2G211500.t1"; gene_id "Ledus.S2G211500"
Ledus.S2	AUGUSTUS	start_codon	16220934	16220936	.	+	0	transcript_id "Ledus.S2G211500.t1"; gene_id "Ledus.S2G211500"
Ledus.S2	AUGUSTUS	CDS	16220934	16221281	0.78	+	0	transcript_id "Ledus.S2G211500.t1"; gene_id "Ledus.S2G211500"
Ledus.S2	AUGUSTUS	exon	16220934	16221281	.	+	.	transcript_id "Ledus.S2G211500.t1"; gene_id "Ledus.S2G211500"
Ledus.S2	AUGUSTUS	stop_codon	16221282	16221284	.	+	0	transcript_id "Ledus.S2G211500.t1"; gene_id "Ledus.S2G211500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2918.t1 is derived from g353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4579519	4580730	.	-	.	Ledus.S1G033900
Ledus.S1	AUGUSTUS	transcript	4579519	4580730	.	-	.	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	stop_codon	4579516	4579518	.	-	0	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	CDS	4579519	4579719	1	-	0	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	exon	4579519	4579719	.	-	.	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	intron	4579720	4579844	.	-	.	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	CDS	4579845	4579982	1	-	0	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	exon	4579845	4579982	.	-	.	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	intron	4579983	4580051	.	-	.	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	CDS	4580052	4580191	1	-	2	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	exon	4580052	4580191	.	-	.	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	intron	4580192	4580364	.	-	.	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	CDS	4580365	4580439	1	-	2	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	exon	4580365	4580439	.	-	.	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	intron	4580440	4580672	.	-	.	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	CDS	4580673	4580730	0.89	-	0	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	exon	4580673	4580730	.	-	.	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
Ledus.S1	AUGUSTUS	start_codon	4580728	4580730	.	-	0	transcript_id "Ledus.S1G033900.t1"; gene_id "Ledus.S1G033900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7825.t1 is derived from g12496.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7272013	7274046	.	-	.	Ledus.S5G060300
Ledus.S5	AUGUSTUS	transcript	7272013	7274046	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	stop_codon	7272010	7272012	.	-	0	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7272013	7272058	1	-	1	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7272013	7272058	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	intron	7272059	7272266	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7272267	7272394	1	-	0	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7272267	7272394	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	intron	7272395	7272494	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7272495	7272582	1	-	1	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7272495	7272582	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	intron	7272583	7272689	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7272690	7272793	1	-	0	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7272690	7272793	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	intron	7272794	7272969	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7272970	7273046	1	-	2	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7272970	7273046	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	intron	7273047	7273233	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7273234	7273336	1	-	0	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7273234	7273336	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	intron	7273337	7273908	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7273909	7274046	0.6	-	0	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7273909	7274046	.	-	.	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	start_codon	7274044	7274046	.	-	0	transcript_id "Ledus.S5G060300.t1"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	transcript	7272013	7274046	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	stop_codon	7272010	7272012	.	-	0	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7272013	7272058	1	-	1	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7272013	7272058	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	intron	7272059	7272323	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7272324	7272394	1	-	0	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7272324	7272394	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	intron	7272395	7272494	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7272495	7272582	1	-	1	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7272495	7272582	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	intron	7272583	7272689	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7272690	7272793	1	-	0	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7272690	7272793	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	intron	7272794	7272969	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7272970	7273046	1	-	2	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7272970	7273046	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	intron	7273047	7273233	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7273234	7273336	1	-	0	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7273234	7273336	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	intron	7273337	7273908	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	CDS	7273909	7274046	0.58	-	0	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	exon	7273909	7274046	.	-	.	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
Ledus.S5	AUGUSTUS	start_codon	7274044	7274046	.	-	0	transcript_id "Ledus.S5G060300.t2"; gene_id "Ledus.S5G060300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1750.t1 is derived from g8612.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12316028	12322283	.	+	.	Ledus.S2G163200
Ledus.S2	AUGUSTUS	transcript	12316028	12322283	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	start_codon	12316028	12316030	.	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12316028	12316248	1	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12316028	12316248	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12316249	12316397	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12316398	12316583	1	+	1	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12316398	12316583	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12316584	12317011	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12317012	12317090	1	+	1	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12317012	12317090	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12317091	12317220	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12317221	12317361	1	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12317221	12317361	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12317362	12317440	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12317441	12317500	1	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12317441	12317500	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12317501	12317632	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12317633	12317674	1	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12317633	12317674	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12317675	12317769	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12317770	12317904	0.99	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12317770	12317904	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12317905	12318005	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12318006	12318122	0.94	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12318006	12318122	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12318123	12318427	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12318428	12318468	0.94	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12318428	12318468	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12318469	12318593	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12318594	12318965	1	+	1	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12318594	12318965	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12318966	12319064	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12319065	12319152	1	+	1	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12319065	12319152	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12319153	12319259	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12319260	12319387	1	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12319260	12319387	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12319388	12319475	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12319476	12319667	1	+	1	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12319476	12319667	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12319668	12319765	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12319766	12319968	1	+	1	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12319766	12319968	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12319969	12320081	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12320082	12320245	1	+	2	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12320082	12320245	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12320246	12320373	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12320374	12320454	1	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12320374	12320454	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12320455	12320547	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12320548	12320714	0.97	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12320548	12320714	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12320715	12320816	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12320817	12320922	1	+	1	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12320817	12320922	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12320923	12321015	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12321016	12321266	1	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12321016	12321266	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12321267	12321380	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12321381	12321453	1	+	1	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12321381	12321453	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12321454	12321557	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12321558	12321686	1	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12321558	12321686	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12321687	12321775	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12321776	12321997	1	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12321776	12321997	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	intron	12321998	12322139	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	CDS	12322140	12322283	1	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	exon	12322140	12322283	.	+	.	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
Ledus.S2	AUGUSTUS	stop_codon	12322284	12322286	.	+	0	transcript_id "Ledus.S2G163200.t1"; gene_id "Ledus.S2G163200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1481.t1 is derived from g8342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10493617	10496706	.	+	.	Ledus.S2G136300
Ledus.S2	AUGUSTUS	transcript	10493617	10496706	.	+	.	transcript_id "Ledus.S2G136300.t1"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	start_codon	10493617	10493619	.	+	0	transcript_id "Ledus.S2G136300.t1"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	CDS	10493617	10495321	0.94	+	0	transcript_id "Ledus.S2G136300.t1"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	exon	10493617	10495321	.	+	.	transcript_id "Ledus.S2G136300.t1"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	intron	10495322	10495414	.	+	.	transcript_id "Ledus.S2G136300.t1"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	CDS	10495415	10495443	1	+	2	transcript_id "Ledus.S2G136300.t1"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	exon	10495415	10495443	.	+	.	transcript_id "Ledus.S2G136300.t1"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	intron	10495444	10495767	.	+	.	transcript_id "Ledus.S2G136300.t1"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	CDS	10495768	10496706	1	+	0	transcript_id "Ledus.S2G136300.t1"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	exon	10495768	10496706	.	+	.	transcript_id "Ledus.S2G136300.t1"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	stop_codon	10496707	10496709	.	+	0	transcript_id "Ledus.S2G136300.t1"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	transcript	10493617	10496706	.	+	.	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	start_codon	10493617	10493619	.	+	0	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	CDS	10493617	10495321	0.97	+	0	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	exon	10493617	10495321	.	+	.	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	intron	10495322	10495414	.	+	.	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	CDS	10495415	10495443	0.94	+	2	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	exon	10495415	10495443	.	+	.	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	intron	10495444	10495614	.	+	.	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	CDS	10495615	10495680	0.74	+	0	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	exon	10495615	10495680	.	+	.	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	intron	10495681	10495938	.	+	.	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	CDS	10495939	10496706	0.79	+	0	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	exon	10495939	10496706	.	+	.	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
Ledus.S2	AUGUSTUS	stop_codon	10496707	10496709	.	+	0	transcript_id "Ledus.S2G136300.t2"; gene_id "Ledus.S2G136300"
# This transcript jg9903.t2 is derived from g10933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9904.t1 is derived from g10934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11077449	11080203	.	-	.	Ledus.S3G138100
Ledus.S3	AUGUSTUS	transcript	11077449	11080203	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	stop_codon	11077446	11077448	.	-	0	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	CDS	11077449	11077496	0.91	-	0	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	exon	11077449	11077496	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	intron	11077497	11077953	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	CDS	11077954	11077993	0.66	-	1	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	exon	11077954	11077993	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	intron	11077994	11078106	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	CDS	11078107	11078174	0.62	-	0	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	exon	11078107	11078174	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	intron	11078175	11078298	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	CDS	11078299	11078426	1	-	2	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	exon	11078299	11078426	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	intron	11078427	11078596	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	CDS	11078597	11078784	1	-	1	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	exon	11078597	11078784	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	intron	11078785	11078936	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	CDS	11078937	11079158	1	-	1	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	exon	11078937	11079158	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	intron	11079159	11079378	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	CDS	11079379	11079467	1	-	0	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	exon	11079379	11079467	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	intron	11079468	11079612	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	CDS	11079613	11079756	1	-	0	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	exon	11079613	11079756	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	intron	11079757	11080101	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	CDS	11080102	11080203	1	-	0	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	exon	11080102	11080203	.	-	.	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
Ledus.S3	AUGUSTUS	start_codon	11080201	11080203	.	-	0	transcript_id "Ledus.S3G138100.t1"; gene_id "Ledus.S3G138100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7917.t1 is derived from g12588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7832456	7835852	.	+	.	Ledus.S5G069500
Ledus.S5	AUGUSTUS	transcript	7832456	7835852	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	start_codon	7832456	7832458	.	+	0	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	CDS	7832456	7832902	0.77	+	0	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	exon	7832456	7832902	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	intron	7832903	7832982	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	CDS	7832983	7833078	0.94	+	0	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	exon	7832983	7833078	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	intron	7833079	7833193	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	CDS	7833194	7833286	0.96	+	0	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	exon	7833194	7833286	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	intron	7833287	7833374	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	CDS	7833375	7833518	1	+	0	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	exon	7833375	7833518	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	intron	7833519	7833669	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	CDS	7833670	7833777	1	+	0	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	exon	7833670	7833777	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	intron	7833778	7833909	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	CDS	7833910	7833961	0.72	+	0	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	exon	7833910	7833961	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	intron	7833962	7834316	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	CDS	7834317	7834348	0.72	+	2	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	exon	7834317	7834348	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	intron	7834349	7834487	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	CDS	7834488	7834592	1	+	0	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	exon	7834488	7834592	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	intron	7834593	7834687	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	CDS	7834688	7834831	1	+	0	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	exon	7834688	7834831	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	intron	7834832	7834958	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	CDS	7834959	7835063	1	+	0	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	exon	7834959	7835063	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	intron	7835064	7835270	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	CDS	7835271	7835322	1	+	0	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	exon	7835271	7835322	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	intron	7835323	7835499	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	CDS	7835500	7835852	0.36	+	2	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	exon	7835500	7835852	.	+	.	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
Ledus.S5	AUGUSTUS	stop_codon	7835853	7835855	.	+	0	transcript_id "Ledus.S5G069500.t1"; gene_id "Ledus.S5G069500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10093.t1 is derived from g11123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12606006	12607832	.	+	.	Ledus.S3G157000
Ledus.S3	AUGUSTUS	transcript	12606006	12607832	.	+	.	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	start_codon	12606006	12606008	.	+	0	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	CDS	12606006	12606116	0.79	+	0	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	exon	12606006	12606116	.	+	.	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	intron	12606117	12606184	.	+	.	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	CDS	12606185	12606503	0.79	+	0	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	exon	12606185	12606503	.	+	.	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	intron	12606504	12606607	.	+	.	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	CDS	12606608	12607170	1	+	2	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	exon	12606608	12607170	.	+	.	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	intron	12607171	12607259	.	+	.	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	CDS	12607260	12607832	1	+	0	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	exon	12607260	12607832	.	+	.	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
Ledus.S3	AUGUSTUS	stop_codon	12607833	12607835	.	+	0	transcript_id "Ledus.S3G157000.t1"; gene_id "Ledus.S3G157000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10955.t1 is derived from g4573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	886162	886746	.	+	.	Ledus.S4G011100
Ledus.S4	AUGUSTUS	transcript	886162	886746	.	+	.	transcript_id "Ledus.S4G011100.t1"; gene_id "Ledus.S4G011100"
Ledus.S4	AUGUSTUS	start_codon	886162	886164	.	+	0	transcript_id "Ledus.S4G011100.t1"; gene_id "Ledus.S4G011100"
Ledus.S4	AUGUSTUS	CDS	886162	886746	0.28	+	0	transcript_id "Ledus.S4G011100.t1"; gene_id "Ledus.S4G011100"
Ledus.S4	AUGUSTUS	exon	886162	886746	.	+	.	transcript_id "Ledus.S4G011100.t1"; gene_id "Ledus.S4G011100"
Ledus.S4	AUGUSTUS	stop_codon	886747	886749	.	+	0	transcript_id "Ledus.S4G011100.t1"; gene_id "Ledus.S4G011100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5620.t1 is derived from g3059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25417184	25419062	.	-	.	Ledus.S1G304100
Ledus.S1	AUGUSTUS	transcript	25417184	25419062	.	-	.	transcript_id "Ledus.S1G304100.t1"; gene_id "Ledus.S1G304100"
Ledus.S1	AUGUSTUS	stop_codon	25417181	25417183	.	-	0	transcript_id "Ledus.S1G304100.t1"; gene_id "Ledus.S1G304100"
Ledus.S1	AUGUSTUS	CDS	25417184	25417333	1	-	0	transcript_id "Ledus.S1G304100.t1"; gene_id "Ledus.S1G304100"
Ledus.S1	AUGUSTUS	exon	25417184	25417333	.	-	.	transcript_id "Ledus.S1G304100.t1"; gene_id "Ledus.S1G304100"
Ledus.S1	AUGUSTUS	intron	25417334	25417511	.	-	.	transcript_id "Ledus.S1G304100.t1"; gene_id "Ledus.S1G304100"
Ledus.S1	AUGUSTUS	CDS	25417512	25419062	0.41	-	0	transcript_id "Ledus.S1G304100.t1"; gene_id "Ledus.S1G304100"
Ledus.S1	AUGUSTUS	exon	25417512	25419062	.	-	.	transcript_id "Ledus.S1G304100.t1"; gene_id "Ledus.S1G304100"
Ledus.S1	AUGUSTUS	start_codon	25419060	25419062	.	-	0	transcript_id "Ledus.S1G304100.t1"; gene_id "Ledus.S1G304100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3333.t1 is derived from g768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7532786	7535871	.	-	.	Ledus.S1G075400
Ledus.S1	AUGUSTUS	transcript	7532786	7535871	.	-	.	transcript_id "Ledus.S1G075400.t1"; gene_id "Ledus.S1G075400"
Ledus.S1	AUGUSTUS	stop_codon	7532783	7532785	.	-	0	transcript_id "Ledus.S1G075400.t1"; gene_id "Ledus.S1G075400"
Ledus.S1	AUGUSTUS	CDS	7532786	7533165	1	-	2	transcript_id "Ledus.S1G075400.t1"; gene_id "Ledus.S1G075400"
Ledus.S1	AUGUSTUS	exon	7532786	7533165	.	-	.	transcript_id "Ledus.S1G075400.t1"; gene_id "Ledus.S1G075400"
Ledus.S1	AUGUSTUS	intron	7533166	7533257	.	-	.	transcript_id "Ledus.S1G075400.t1"; gene_id "Ledus.S1G075400"
Ledus.S1	AUGUSTUS	CDS	7533258	7535871	0.96	-	0	transcript_id "Ledus.S1G075400.t1"; gene_id "Ledus.S1G075400"
Ledus.S1	AUGUSTUS	exon	7533258	7535871	.	-	.	transcript_id "Ledus.S1G075400.t1"; gene_id "Ledus.S1G075400"
Ledus.S1	AUGUSTUS	start_codon	7535869	7535871	.	-	0	transcript_id "Ledus.S1G075400.t1"; gene_id "Ledus.S1G075400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2381.t1 is derived from g9244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17822433	17827278	.	-	.	Ledus.S2G226300
Ledus.S2	AUGUSTUS	transcript	17822433	17827278	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	stop_codon	17822430	17822432	.	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17822433	17822580	0.99	-	1	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17822433	17822580	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17822581	17822696	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17822697	17822785	1	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17822697	17822785	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17822786	17822911	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17822912	17823349	1	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17822912	17823349	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17823350	17823504	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17823505	17823599	1	-	2	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17823505	17823599	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17823600	17823701	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17823702	17823834	1	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17823702	17823834	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17823835	17823905	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17823906	17823987	1	-	1	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17823906	17823987	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17823988	17824107	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17824108	17824163	1	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17824108	17824163	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17824164	17824245	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17824246	17824395	1	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17824246	17824395	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17824396	17824477	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17824478	17824592	0.92	-	1	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17824478	17824592	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17824593	17824706	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17824707	17824799	0.82	-	1	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17824707	17824799	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17824800	17824949	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17824950	17825083	0.93	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17824950	17825083	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17825084	17825215	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17825216	17825264	0.93	-	1	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17825216	17825264	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17825265	17825403	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17825404	17825468	0.93	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17825404	17825468	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17825469	17825573	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17825574	17825652	0.93	-	1	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17825574	17825652	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17825653	17825764	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17825765	17825820	1	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17825765	17825820	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17825821	17825915	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17825916	17826062	1	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17825916	17826062	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17826063	17826154	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17826155	17826193	1	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17826155	17826193	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17826194	17826268	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17826269	17826343	1	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17826269	17826343	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17826344	17826518	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17826519	17826656	0.84	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17826519	17826656	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17826657	17826776	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17826777	17826829	1	-	2	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17826777	17826829	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17826830	17826944	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17826945	17827003	0.99	-	1	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17826945	17827003	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17827004	17827105	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17827106	17827278	0.98	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17827106	17827278	.	-	.	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	start_codon	17827276	17827278	.	-	0	transcript_id "Ledus.S2G226300.t1"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	transcript	17822433	17827278	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	stop_codon	17822430	17822432	.	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17822433	17822580	0.99	-	1	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17822433	17822580	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17822581	17822696	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17822697	17822785	1	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17822697	17822785	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17822786	17822911	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17822912	17823349	1	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17822912	17823349	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17823350	17823504	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17823505	17823599	1	-	2	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17823505	17823599	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17823600	17823701	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17823702	17823834	0.98	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17823702	17823834	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17823835	17823905	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17823906	17823987	1	-	1	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17823906	17823987	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17823988	17824107	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17824108	17824163	1	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17824108	17824163	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17824164	17824245	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17824246	17824395	1	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17824246	17824395	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17824396	17824477	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17824478	17824592	0.81	-	1	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17824478	17824592	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17824593	17824706	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17824707	17824799	0.72	-	1	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17824707	17824799	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17824800	17825028	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17825029	17825083	0.81	-	2	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17825029	17825083	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17825084	17825215	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17825216	17825264	0.81	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17825216	17825264	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17825265	17825403	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17825404	17825468	0.81	-	2	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17825404	17825468	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17825469	17825623	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17825624	17825652	0.8	-	1	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17825624	17825652	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17825653	17825764	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17825765	17825820	1	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17825765	17825820	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17825821	17825915	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17825916	17826062	1	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17825916	17826062	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17826063	17826154	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17826155	17826193	1	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17826155	17826193	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17826194	17826268	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17826269	17826343	1	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17826269	17826343	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17826344	17826518	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17826519	17826656	0.86	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17826519	17826656	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17826657	17826776	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17826777	17826829	1	-	2	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17826777	17826829	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17826830	17826944	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17826945	17827003	1	-	1	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17826945	17827003	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	intron	17827004	17827105	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	CDS	17827106	17827278	0.98	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	exon	17827106	17827278	.	-	.	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
Ledus.S2	AUGUSTUS	start_codon	17827276	17827278	.	-	0	transcript_id "Ledus.S2G226300.t2"; gene_id "Ledus.S2G226300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12130.t1 is derived from g5749.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9677578	9680923	.	+	.	Ledus.S4G128600
Ledus.S4	AUGUSTUS	transcript	9677578	9680923	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	start_codon	9677578	9677580	.	+	0	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9677578	9677714	0.31	+	0	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9677578	9677714	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9677715	9677894	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9677895	9677904	0.8	+	1	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9677895	9677904	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9677905	9678019	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9678020	9678070	1	+	0	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9678020	9678070	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9678071	9678222	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9678223	9678300	1	+	0	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9678223	9678300	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9678301	9678535	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9678536	9678611	1	+	0	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9678536	9678611	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9678612	9678704	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9678705	9678727	1	+	2	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9678705	9678727	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9678728	9678835	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9678836	9678936	0.96	+	0	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9678836	9678936	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9678937	9679019	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9679020	9679114	1	+	1	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9679020	9679114	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9679115	9679258	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9679259	9679315	1	+	2	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9679259	9679315	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9679316	9679410	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9679411	9679480	1	+	2	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9679411	9679480	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9679481	9679602	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9679603	9679666	1	+	1	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9679603	9679666	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9679667	9679783	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9679784	9679824	1	+	0	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9679784	9679824	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9679825	9679959	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9679960	9680044	1	+	1	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9679960	9680044	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9680045	9680181	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9680182	9680244	1	+	0	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9680182	9680244	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9680245	9680366	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9680367	9680425	1	+	0	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9680367	9680425	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9680426	9680526	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9680527	9680579	1	+	1	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9680527	9680579	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9680580	9680676	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9680677	9680749	1	+	2	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9680677	9680749	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	intron	9680750	9680895	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	CDS	9680896	9680923	1	+	1	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	exon	9680896	9680923	.	+	.	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
Ledus.S4	AUGUSTUS	stop_codon	9680924	9680926	.	+	0	transcript_id "Ledus.S4G128600.t1"; gene_id "Ledus.S4G128600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11612.t1 is derived from g5230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5522901	5523356	.	+	.	Ledus.S4G076800
Ledus.S4	AUGUSTUS	transcript	5522901	5523356	.	+	.	transcript_id "Ledus.S4G076800.t1"; gene_id "Ledus.S4G076800"
Ledus.S4	AUGUSTUS	start_codon	5522901	5522903	.	+	0	transcript_id "Ledus.S4G076800.t1"; gene_id "Ledus.S4G076800"
Ledus.S4	AUGUSTUS	CDS	5522901	5523197	0.94	+	0	transcript_id "Ledus.S4G076800.t1"; gene_id "Ledus.S4G076800"
Ledus.S4	AUGUSTUS	exon	5522901	5523197	.	+	.	transcript_id "Ledus.S4G076800.t1"; gene_id "Ledus.S4G076800"
Ledus.S4	AUGUSTUS	intron	5523198	5523284	.	+	.	transcript_id "Ledus.S4G076800.t1"; gene_id "Ledus.S4G076800"
Ledus.S4	AUGUSTUS	CDS	5523285	5523356	0.96	+	0	transcript_id "Ledus.S4G076800.t1"; gene_id "Ledus.S4G076800"
Ledus.S4	AUGUSTUS	exon	5523285	5523356	.	+	.	transcript_id "Ledus.S4G076800.t1"; gene_id "Ledus.S4G076800"
Ledus.S4	AUGUSTUS	stop_codon	5523357	5523359	.	+	0	transcript_id "Ledus.S4G076800.t1"; gene_id "Ledus.S4G076800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10594.t1 is derived from g11624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16284316	16285155	.	+	.	Ledus.S3G207100
Ledus.S3	AUGUSTUS	transcript	16284316	16285155	.	+	.	transcript_id "Ledus.S3G207100.t1"; gene_id "Ledus.S3G207100"
Ledus.S3	AUGUSTUS	start_codon	16284316	16284318	.	+	0	transcript_id "Ledus.S3G207100.t1"; gene_id "Ledus.S3G207100"
Ledus.S3	AUGUSTUS	CDS	16284316	16284412	0.98	+	0	transcript_id "Ledus.S3G207100.t1"; gene_id "Ledus.S3G207100"
Ledus.S3	AUGUSTUS	exon	16284316	16284412	.	+	.	transcript_id "Ledus.S3G207100.t1"; gene_id "Ledus.S3G207100"
Ledus.S3	AUGUSTUS	intron	16284413	16284518	.	+	.	transcript_id "Ledus.S3G207100.t1"; gene_id "Ledus.S3G207100"
Ledus.S3	AUGUSTUS	CDS	16284519	16284755	1	+	2	transcript_id "Ledus.S3G207100.t1"; gene_id "Ledus.S3G207100"
Ledus.S3	AUGUSTUS	exon	16284519	16284755	.	+	.	transcript_id "Ledus.S3G207100.t1"; gene_id "Ledus.S3G207100"
Ledus.S3	AUGUSTUS	intron	16284756	16284835	.	+	.	transcript_id "Ledus.S3G207100.t1"; gene_id "Ledus.S3G207100"
Ledus.S3	AUGUSTUS	CDS	16284836	16285155	1	+	2	transcript_id "Ledus.S3G207100.t1"; gene_id "Ledus.S3G207100"
Ledus.S3	AUGUSTUS	exon	16284836	16285155	.	+	.	transcript_id "Ledus.S3G207100.t1"; gene_id "Ledus.S3G207100"
Ledus.S3	AUGUSTUS	stop_codon	16285156	16285158	.	+	0	transcript_id "Ledus.S3G207100.t1"; gene_id "Ledus.S3G207100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7302.t1 is derived from g11973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	883235	884467	.	-	.	Ledus.S5G008000
Ledus.S5	AUGUSTUS	transcript	883235	884467	.	-	.	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	stop_codon	883232	883234	.	-	0	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	CDS	883235	883252	0.94	-	0	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	exon	883235	883252	.	-	.	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	intron	883253	883393	.	-	.	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	CDS	883394	883479	0.64	-	2	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	exon	883394	883479	.	-	.	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	intron	883480	883926	.	-	.	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	CDS	883927	883977	0.95	-	2	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	exon	883927	883977	.	-	.	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	intron	883978	884123	.	-	.	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	CDS	884124	884158	1	-	1	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	exon	884124	884158	.	-	.	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	intron	884159	884246	.	-	.	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	CDS	884247	884353	1	-	0	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	exon	884247	884353	.	-	.	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	intron	884354	884464	.	-	.	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	CDS	884465	884467	0.93	-	0	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	exon	884465	884467	.	-	.	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
Ledus.S5	AUGUSTUS	start_codon	884465	884467	.	-	0	transcript_id "Ledus.S5G008000.t1"; gene_id "Ledus.S5G008000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8897.t1 is derived from g9927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2932333	2935696	.	+	.	Ledus.S3G037400
Ledus.S3	AUGUSTUS	transcript	2932333	2935696	.	+	.	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	start_codon	2932333	2932335	.	+	0	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	CDS	2932333	2932383	0.66	+	0	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	exon	2932333	2932383	.	+	.	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	intron	2932384	2932653	.	+	.	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	CDS	2932654	2932909	1	+	0	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	exon	2932654	2932909	.	+	.	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	intron	2932910	2933099	.	+	.	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	CDS	2933100	2933361	1	+	2	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	exon	2933100	2933361	.	+	.	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	intron	2933362	2933443	.	+	.	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	CDS	2933444	2933898	1	+	1	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	exon	2933444	2933898	.	+	.	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	intron	2933899	2933991	.	+	.	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	CDS	2933992	2935214	1	+	2	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	exon	2933992	2935214	.	+	.	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	intron	2935215	2935312	.	+	.	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	CDS	2935313	2935696	0.96	+	0	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	exon	2935313	2935696	.	+	.	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
Ledus.S3	AUGUSTUS	stop_codon	2935697	2935699	.	+	0	transcript_id "Ledus.S3G037400.t1"; gene_id "Ledus.S3G037400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11689.t1 is derived from g5308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6016240	6028714	.	-	.	Ledus.S4G084500
Ledus.S4	AUGUSTUS	transcript	6016240	6028714	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	stop_codon	6016237	6016239	.	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6016240	6016431	0.16	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6016240	6016431	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6016432	6016532	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6016533	6018152	0.72	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6016533	6018152	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6018153	6018231	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6018232	6019154	0.68	-	2	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6018232	6019154	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6019155	6019237	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6019238	6019445	0.79	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6019238	6019445	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6019446	6019525	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6019526	6019690	1	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6019526	6019690	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6019691	6019786	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6019787	6019852	1	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6019787	6019852	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6019853	6019942	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6019943	6020026	1	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6019943	6020026	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6020027	6020131	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6020132	6020232	0.93	-	2	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6020132	6020232	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6020233	6020321	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6020322	6020420	1	-	2	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6020322	6020420	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6020421	6020538	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6020539	6020656	0.99	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6020539	6020656	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6020657	6020838	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6020839	6020915	1	-	2	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6020839	6020915	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6020916	6021005	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6021006	6021159	1	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6021006	6021159	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6021160	6021256	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6021257	6021311	1	-	1	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6021257	6021311	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6021312	6021418	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6021419	6021612	0.77	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6021419	6021612	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6021613	6021711	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6021712	6022014	1	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6021712	6022014	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6022015	6022138	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6022139	6022243	0.82	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6022139	6022243	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6022244	6022326	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6022327	6022522	0.95	-	1	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6022327	6022522	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6022523	6022633	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6022634	6022707	1	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6022634	6022707	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6022708	6022807	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6022808	6024658	0.92	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6022808	6024658	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6024659	6024753	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6024754	6024879	0.99	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6024754	6024879	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6024880	6024994	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6024995	6025174	0.96	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6024995	6025174	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6025175	6025280	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6025281	6025337	0.98	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6025281	6025337	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6025338	6025428	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6025429	6025682	0.46	-	2	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6025429	6025682	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6025683	6025993	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6025994	6026047	0.87	-	2	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6025994	6026047	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6026048	6026179	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6026180	6026302	1	-	2	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6026180	6026302	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6026303	6026390	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6026391	6026472	1	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6026391	6026472	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6026473	6026563	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6026564	6026683	1	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6026564	6026683	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6026684	6026782	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6026783	6026895	1	-	2	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6026783	6026895	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6026896	6026998	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6026999	6027162	0.59	-	1	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6026999	6027162	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6027163	6027303	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6027304	6027510	0.99	-	1	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6027304	6027510	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6027511	6027650	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6027651	6027874	0.5	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6027651	6027874	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6027875	6028038	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6028039	6028135	0.66	-	1	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6028039	6028135	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6028136	6028237	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6028238	6028515	0.98	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6028238	6028515	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	intron	6028516	6028609	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	CDS	6028610	6028714	1	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	exon	6028610	6028714	.	-	.	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
Ledus.S4	AUGUSTUS	start_codon	6028712	6028714	.	-	0	transcript_id "Ledus.S4G084500.t1"; gene_id "Ledus.S4G084500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12911.t1 is derived from g4403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	296469	299800	.	-	.	Ledus.C9G001900
Ledus.C9	AUGUSTUS	transcript	296469	299800	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	stop_codon	296466	296468	.	-	0	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	CDS	296469	296774	1	-	0	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	exon	296469	296774	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	intron	296775	296865	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	CDS	296866	297003	1	-	0	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	exon	296866	297003	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	intron	297004	297108	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	CDS	297109	297390	1	-	0	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	exon	297109	297390	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	intron	297391	297502	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	CDS	297503	297637	0.98	-	0	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	exon	297503	297637	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	intron	297638	297729	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	CDS	297730	297987	1	-	0	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	exon	297730	297987	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	intron	297988	298077	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	CDS	298078	298257	1	-	0	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	exon	298078	298257	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	intron	298258	298360	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	CDS	298361	299800	1	-	0	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	exon	298361	299800	.	-	.	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
Ledus.C9	AUGUSTUS	start_codon	299798	299800	.	-	0	transcript_id "Ledus.C9G001900.t1"; gene_id "Ledus.C9G001900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5293.t1 is derived from g2732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22887045	22887347	.	+	.	Ledus.S1G271400
Ledus.S1	AUGUSTUS	transcript	22887045	22887347	.	+	.	transcript_id "Ledus.S1G271400.t1"; gene_id "Ledus.S1G271400"
Ledus.S1	AUGUSTUS	start_codon	22887045	22887047	.	+	0	transcript_id "Ledus.S1G271400.t1"; gene_id "Ledus.S1G271400"
Ledus.S1	AUGUSTUS	CDS	22887045	22887347	0.72	+	0	transcript_id "Ledus.S1G271400.t1"; gene_id "Ledus.S1G271400"
Ledus.S1	AUGUSTUS	exon	22887045	22887347	.	+	.	transcript_id "Ledus.S1G271400.t1"; gene_id "Ledus.S1G271400"
Ledus.S1	AUGUSTUS	stop_codon	22887348	22887350	.	+	0	transcript_id "Ledus.S1G271400.t1"; gene_id "Ledus.S1G271400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9850.t1 is derived from g10880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10547320	10547794	.	-	.	Ledus.S3G132700
Ledus.S3	AUGUSTUS	transcript	10547320	10547794	.	-	.	transcript_id "Ledus.S3G132700.t1"; gene_id "Ledus.S3G132700"
Ledus.S3	AUGUSTUS	stop_codon	10547317	10547319	.	-	0	transcript_id "Ledus.S3G132700.t1"; gene_id "Ledus.S3G132700"
Ledus.S3	AUGUSTUS	CDS	10547320	10547536	0.88	-	1	transcript_id "Ledus.S3G132700.t1"; gene_id "Ledus.S3G132700"
Ledus.S3	AUGUSTUS	exon	10547320	10547536	.	-	.	transcript_id "Ledus.S3G132700.t1"; gene_id "Ledus.S3G132700"
Ledus.S3	AUGUSTUS	intron	10547537	10547648	.	-	.	transcript_id "Ledus.S3G132700.t1"; gene_id "Ledus.S3G132700"
Ledus.S3	AUGUSTUS	CDS	10547649	10547794	0.47	-	0	transcript_id "Ledus.S3G132700.t1"; gene_id "Ledus.S3G132700"
Ledus.S3	AUGUSTUS	exon	10547649	10547794	.	-	.	transcript_id "Ledus.S3G132700.t1"; gene_id "Ledus.S3G132700"
Ledus.S3	AUGUSTUS	start_codon	10547792	10547794	.	-	0	transcript_id "Ledus.S3G132700.t1"; gene_id "Ledus.S3G132700"
# This transcript jg8725.t2 is derived from g9755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8725.t3 is derived from g9755.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8726.t1 is derived from g9756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1604871	1605300	.	+	.	Ledus.S3G020300
Ledus.S3	AUGUSTUS	transcript	1604871	1605300	.	+	.	transcript_id "Ledus.S3G020300.t1"; gene_id "Ledus.S3G020300"
Ledus.S3	AUGUSTUS	start_codon	1604871	1604873	.	+	0	transcript_id "Ledus.S3G020300.t1"; gene_id "Ledus.S3G020300"
Ledus.S3	AUGUSTUS	CDS	1604871	1605162	0.91	+	0	transcript_id "Ledus.S3G020300.t1"; gene_id "Ledus.S3G020300"
Ledus.S3	AUGUSTUS	exon	1604871	1605162	.	+	.	transcript_id "Ledus.S3G020300.t1"; gene_id "Ledus.S3G020300"
Ledus.S3	AUGUSTUS	intron	1605163	1605256	.	+	.	transcript_id "Ledus.S3G020300.t1"; gene_id "Ledus.S3G020300"
Ledus.S3	AUGUSTUS	CDS	1605257	1605300	0.65	+	2	transcript_id "Ledus.S3G020300.t1"; gene_id "Ledus.S3G020300"
Ledus.S3	AUGUSTUS	exon	1605257	1605300	.	+	.	transcript_id "Ledus.S3G020300.t1"; gene_id "Ledus.S3G020300"
Ledus.S3	AUGUSTUS	stop_codon	1605301	1605303	.	+	0	transcript_id "Ledus.S3G020300.t1"; gene_id "Ledus.S3G020300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4381.t1 is derived from g1817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16733493	16736509	.	+	.	Ledus.S1G180200
Ledus.S1	AUGUSTUS	transcript	16733493	16736509	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	start_codon	16733493	16733495	.	+	0	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16733493	16733510	0.44	+	0	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16733493	16733510	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	intron	16733511	16733639	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16733640	16733756	0.2	+	0	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16733640	16733756	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	intron	16733757	16733890	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16733891	16733903	0.54	+	0	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16733891	16733903	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	intron	16733904	16734419	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16734420	16734488	1	+	2	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16734420	16734488	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	intron	16734489	16734619	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16734620	16734732	1	+	2	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16734620	16734732	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	intron	16734733	16734893	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16734894	16735010	1	+	0	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16734894	16735010	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	intron	16735011	16735103	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16735104	16735200	1	+	0	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16735104	16735200	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	intron	16735201	16735287	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16735288	16735361	1	+	2	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16735288	16735361	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	intron	16735362	16735450	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16735451	16735504	1	+	0	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16735451	16735504	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	intron	16735505	16735638	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16735639	16735737	1	+	0	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16735639	16735737	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	intron	16735738	16735877	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16735878	16735936	1	+	0	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16735878	16735936	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	intron	16735937	16736125	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16736126	16736327	1	+	1	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16736126	16736327	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	intron	16736328	16736452	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	CDS	16736453	16736509	1	+	0	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	exon	16736453	16736509	.	+	.	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
Ledus.S1	AUGUSTUS	stop_codon	16736510	16736512	.	+	0	transcript_id "Ledus.S1G180200.t1"; gene_id "Ledus.S1G180200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg66.t1 is derived from g9479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	194800	198420	.	-	.	Ledus.C8G002600
Ledus.C8	AUGUSTUS	transcript	194800	198420	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	stop_codon	194797	194799	.	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	194800	194914	1	-	1	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	194800	194914	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	194915	195007	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	195008	195086	1	-	2	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	195008	195086	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	195087	195186	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	195187	195292	1	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	195187	195292	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	195293	195390	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	195391	195494	1	-	2	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	195391	195494	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	195495	195579	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	195580	195679	1	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	195580	195679	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	195680	195768	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	195769	195864	1	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	195769	195864	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	195865	195956	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	195957	196033	1	-	2	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	195957	196033	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	196034	196166	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	196167	196221	0.9	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	196167	196221	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	196222	196323	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	196324	196404	0.96	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	196324	196404	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	196405	196508	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	196509	196598	0.99	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	196509	196598	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	196599	196707	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	196708	196794	0.99	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	196708	196794	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	196795	196908	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	196909	197013	1	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	196909	197013	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	197014	197127	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	197128	197223	1	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	197128	197223	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	197224	197353	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	197354	197529	1	-	2	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	197354	197529	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	197530	197679	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	197680	197839	1	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	197680	197839	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	197840	197937	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	197938	198069	1	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	197938	198069	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	198070	198224	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	198225	198252	1	-	1	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	198225	198252	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	intron	198253	198382	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	CDS	198383	198420	0.66	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	exon	198383	198420	.	-	.	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
Ledus.C8	AUGUSTUS	start_codon	198418	198420	.	-	0	transcript_id "Ledus.C8G002600.t1"; gene_id "Ledus.C8G002600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11655.t1 is derived from g5274.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5745485	5749702	.	-	.	Ledus.S4G081100
Ledus.S4	AUGUSTUS	transcript	5745485	5749702	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	stop_codon	5745482	5745484	.	-	0	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	CDS	5745485	5745640	1	-	0	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	exon	5745485	5745640	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	intron	5745641	5745735	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	CDS	5745736	5745808	1	-	1	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	exon	5745736	5745808	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	intron	5745809	5745900	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	CDS	5745901	5746201	0.97	-	2	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	exon	5745901	5746201	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	intron	5746202	5746406	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	CDS	5746407	5747649	0.64	-	0	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	exon	5746407	5747649	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	intron	5747650	5747759	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	CDS	5747760	5748416	0.69	-	0	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	exon	5747760	5748416	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	intron	5748417	5748576	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	CDS	5748577	5748687	1	-	0	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	exon	5748577	5748687	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	intron	5748688	5748866	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	CDS	5748867	5749019	1	-	0	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	exon	5748867	5749019	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	intron	5749020	5749240	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	CDS	5749241	5749464	1	-	2	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	exon	5749241	5749464	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	intron	5749465	5749599	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	CDS	5749600	5749702	0.32	-	0	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	exon	5749600	5749702	.	-	.	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
Ledus.S4	AUGUSTUS	start_codon	5749700	5749702	.	-	0	transcript_id "Ledus.S4G081100.t1"; gene_id "Ledus.S4G081100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1950.t1 is derived from g8813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13657926	13658878	.	-	.	Ledus.S2G183200
Ledus.S2	AUGUSTUS	transcript	13657926	13658878	.	-	.	transcript_id "Ledus.S2G183200.t1"; gene_id "Ledus.S2G183200"
Ledus.S2	AUGUSTUS	stop_codon	13657923	13657925	.	-	0	transcript_id "Ledus.S2G183200.t1"; gene_id "Ledus.S2G183200"
Ledus.S2	AUGUSTUS	CDS	13657926	13658695	0.94	-	2	transcript_id "Ledus.S2G183200.t1"; gene_id "Ledus.S2G183200"
Ledus.S2	AUGUSTUS	exon	13657926	13658695	.	-	.	transcript_id "Ledus.S2G183200.t1"; gene_id "Ledus.S2G183200"
Ledus.S2	AUGUSTUS	intron	13658696	13658805	.	-	.	transcript_id "Ledus.S2G183200.t1"; gene_id "Ledus.S2G183200"
Ledus.S2	AUGUSTUS	CDS	13658806	13658878	0.74	-	0	transcript_id "Ledus.S2G183200.t1"; gene_id "Ledus.S2G183200"
Ledus.S2	AUGUSTUS	exon	13658806	13658878	.	-	.	transcript_id "Ledus.S2G183200.t1"; gene_id "Ledus.S2G183200"
Ledus.S2	AUGUSTUS	start_codon	13658876	13658878	.	-	0	transcript_id "Ledus.S2G183200.t1"; gene_id "Ledus.S2G183200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10511.t1 is derived from g11541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15734619	15735397	.	+	.	Ledus.S3G198800
Ledus.S3	AUGUSTUS	transcript	15734619	15735397	.	+	.	transcript_id "Ledus.S3G198800.t1"; gene_id "Ledus.S3G198800"
Ledus.S3	AUGUSTUS	start_codon	15734619	15734621	.	+	0	transcript_id "Ledus.S3G198800.t1"; gene_id "Ledus.S3G198800"
Ledus.S3	AUGUSTUS	CDS	15734619	15734736	0.98	+	0	transcript_id "Ledus.S3G198800.t1"; gene_id "Ledus.S3G198800"
Ledus.S3	AUGUSTUS	exon	15734619	15734736	.	+	.	transcript_id "Ledus.S3G198800.t1"; gene_id "Ledus.S3G198800"
Ledus.S3	AUGUSTUS	intron	15734737	15735077	.	+	.	transcript_id "Ledus.S3G198800.t1"; gene_id "Ledus.S3G198800"
Ledus.S3	AUGUSTUS	CDS	15735078	15735397	0.92	+	2	transcript_id "Ledus.S3G198800.t1"; gene_id "Ledus.S3G198800"
Ledus.S3	AUGUSTUS	exon	15735078	15735397	.	+	.	transcript_id "Ledus.S3G198800.t1"; gene_id "Ledus.S3G198800"
Ledus.S3	AUGUSTUS	stop_codon	15735398	15735400	.	+	0	transcript_id "Ledus.S3G198800.t1"; gene_id "Ledus.S3G198800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5685.t1 is derived from g3124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25835076	25836250	.	-	.	Ledus.S1G310600
Ledus.S1	AUGUSTUS	transcript	25835076	25836250	.	-	.	transcript_id "Ledus.S1G310600.t1"; gene_id "Ledus.S1G310600"
Ledus.S1	AUGUSTUS	stop_codon	25835073	25835075	.	-	0	transcript_id "Ledus.S1G310600.t1"; gene_id "Ledus.S1G310600"
Ledus.S1	AUGUSTUS	CDS	25835076	25835627	1	-	0	transcript_id "Ledus.S1G310600.t1"; gene_id "Ledus.S1G310600"
Ledus.S1	AUGUSTUS	exon	25835076	25835627	.	-	.	transcript_id "Ledus.S1G310600.t1"; gene_id "Ledus.S1G310600"
Ledus.S1	AUGUSTUS	intron	25835628	25835710	.	-	.	transcript_id "Ledus.S1G310600.t1"; gene_id "Ledus.S1G310600"
Ledus.S1	AUGUSTUS	CDS	25835711	25835902	1	-	0	transcript_id "Ledus.S1G310600.t1"; gene_id "Ledus.S1G310600"
Ledus.S1	AUGUSTUS	exon	25835711	25835902	.	-	.	transcript_id "Ledus.S1G310600.t1"; gene_id "Ledus.S1G310600"
Ledus.S1	AUGUSTUS	intron	25835903	25836007	.	-	.	transcript_id "Ledus.S1G310600.t1"; gene_id "Ledus.S1G310600"
Ledus.S1	AUGUSTUS	CDS	25836008	25836250	0.61	-	0	transcript_id "Ledus.S1G310600.t1"; gene_id "Ledus.S1G310600"
Ledus.S1	AUGUSTUS	exon	25836008	25836250	.	-	.	transcript_id "Ledus.S1G310600.t1"; gene_id "Ledus.S1G310600"
Ledus.S1	AUGUSTUS	start_codon	25836248	25836250	.	-	0	transcript_id "Ledus.S1G310600.t1"; gene_id "Ledus.S1G310600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3340.t1 is derived from g775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7570774	7574341	.	+	.	Ledus.S1G076100
Ledus.S1	AUGUSTUS	transcript	7570774	7574341	.	+	.	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	start_codon	7570774	7570776	.	+	0	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	CDS	7570774	7570796	0.76	+	0	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	exon	7570774	7570796	.	+	.	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	intron	7570797	7571003	.	+	.	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	CDS	7571004	7571068	0.36	+	1	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	exon	7571004	7571068	.	+	.	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	intron	7571069	7571192	.	+	.	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	CDS	7571193	7573757	0.36	+	2	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	exon	7571193	7573757	.	+	.	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	intron	7573758	7573949	.	+	.	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	CDS	7573950	7574341	0.98	+	2	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	exon	7573950	7574341	.	+	.	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
Ledus.S1	AUGUSTUS	stop_codon	7574342	7574344	.	+	0	transcript_id "Ledus.S1G076100.t1"; gene_id "Ledus.S1G076100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6186.t1 is derived from g3629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29453641	29455040	.	+	.	Ledus.S1G360700
Ledus.S1	AUGUSTUS	transcript	29453641	29455040	.	+	.	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	start_codon	29453641	29453643	.	+	0	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	CDS	29453641	29454010	0.61	+	0	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	exon	29453641	29454010	.	+	.	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	intron	29454011	29454089	.	+	.	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	CDS	29454090	29454301	1	+	2	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	exon	29454090	29454301	.	+	.	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	intron	29454302	29454435	.	+	.	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	CDS	29454436	29454485	1	+	0	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	exon	29454436	29454485	.	+	.	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	intron	29454486	29454571	.	+	.	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	CDS	29454572	29454659	1	+	1	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	exon	29454572	29454659	.	+	.	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	intron	29454660	29454735	.	+	.	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	CDS	29454736	29454852	0.94	+	0	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	exon	29454736	29454852	.	+	.	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	intron	29454853	29454968	.	+	.	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	CDS	29454969	29455040	0.94	+	0	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	exon	29454969	29455040	.	+	.	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
Ledus.S1	AUGUSTUS	stop_codon	29455041	29455043	.	+	0	transcript_id "Ledus.S1G360700.t1"; gene_id "Ledus.S1G360700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg857.t1 is derived from g7718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5703813	5706738	.	+	.	Ledus.S2G073900
Ledus.S2	AUGUSTUS	transcript	5703813	5706738	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	start_codon	5703813	5703815	.	+	0	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	CDS	5703813	5704058	1	+	0	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	exon	5703813	5704058	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	intron	5704059	5704223	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	CDS	5704224	5704271	1	+	0	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	exon	5704224	5704271	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	intron	5704272	5704367	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	CDS	5704368	5704535	1	+	0	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	exon	5704368	5704535	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	intron	5704536	5704752	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	CDS	5704753	5704823	1	+	0	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	exon	5704753	5704823	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	intron	5704824	5704964	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	CDS	5704965	5705022	1	+	1	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	exon	5704965	5705022	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	intron	5705023	5705247	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	CDS	5705248	5705427	1	+	0	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	exon	5705248	5705427	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	intron	5705428	5705513	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	CDS	5705514	5705598	1	+	0	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	exon	5705514	5705598	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	intron	5705599	5705713	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	CDS	5705714	5705773	1	+	2	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	exon	5705714	5705773	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	intron	5705774	5705951	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	CDS	5705952	5706025	1	+	2	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	exon	5705952	5706025	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	intron	5706026	5706142	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	CDS	5706143	5706215	0.65	+	0	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	exon	5706143	5706215	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	intron	5706216	5706450	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	CDS	5706451	5706557	0.27	+	2	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	exon	5706451	5706557	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	intron	5706558	5706657	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	CDS	5706658	5706738	0.61	+	0	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	exon	5706658	5706738	.	+	.	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
Ledus.S2	AUGUSTUS	stop_codon	5706739	5706741	.	+	0	transcript_id "Ledus.S2G073900.t1"; gene_id "Ledus.S2G073900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3273.t1 is derived from g708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7201136	7203570	.	+	.	Ledus.S1G069400
Ledus.S1	AUGUSTUS	transcript	7201136	7203570	.	+	.	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	start_codon	7201136	7201138	.	+	0	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	CDS	7201136	7201228	0.81	+	0	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	exon	7201136	7201228	.	+	.	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	intron	7201229	7201438	.	+	.	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	CDS	7201439	7201930	0.53	+	0	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	exon	7201439	7201930	.	+	.	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	intron	7201931	7202001	.	+	.	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	CDS	7202002	7202518	1	+	0	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	exon	7202002	7202518	.	+	.	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	intron	7202519	7202604	.	+	.	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	CDS	7202605	7202962	0.96	+	2	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	exon	7202605	7202962	.	+	.	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	intron	7202963	7203036	.	+	.	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	CDS	7203037	7203126	0.49	+	1	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	exon	7203037	7203126	.	+	.	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	intron	7203127	7203326	.	+	.	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	CDS	7203327	7203570	0.48	+	1	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	exon	7203327	7203570	.	+	.	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
Ledus.S1	AUGUSTUS	stop_codon	7203571	7203573	.	+	0	transcript_id "Ledus.S1G069400.t1"; gene_id "Ledus.S1G069400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9018.t1 is derived from g10048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3881809	3887828	.	+	.	Ledus.S3G049500
Ledus.S3	AUGUSTUS	transcript	3881809	3887828	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	start_codon	3881809	3881811	.	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3881809	3881906	0.94	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3881809	3881906	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3881907	3882036	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3882037	3882238	0.96	+	1	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3882037	3882238	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3882239	3882327	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3882328	3882400	1	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3882328	3882400	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3882401	3882553	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3882554	3882575	1	+	2	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3882554	3882575	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3882576	3882736	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3882737	3882815	1	+	1	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3882737	3882815	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3882816	3882946	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3882947	3882979	1	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3882947	3882979	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3882980	3883199	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3883200	3883348	1	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3883200	3883348	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3883349	3883444	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3883445	3883601	1	+	1	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3883445	3883601	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3883602	3883685	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3883686	3883926	1	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3883686	3883926	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3883927	3884064	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3884065	3884306	1	+	2	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3884065	3884306	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3884307	3884397	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3884398	3884664	1	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3884398	3884664	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3884665	3884759	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3884760	3884870	1	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3884760	3884870	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3884871	3884988	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3884989	3885213	0.99	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3884989	3885213	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3885214	3885377	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3885378	3885581	1	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3885378	3885581	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3885582	3885710	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3885711	3885887	1	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3885711	3885887	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3885888	3885982	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3885983	3886149	0.25	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3885983	3886149	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3886150	3886392	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3886393	3886554	0.25	+	1	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3886393	3886554	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3886555	3886792	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3886793	3886967	1	+	1	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3886793	3886967	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	intron	3886968	3887273	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	CDS	3887274	3887828	0.9	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	exon	3887274	3887828	.	+	.	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
Ledus.S3	AUGUSTUS	stop_codon	3887829	3887831	.	+	0	transcript_id "Ledus.S3G049500.t1"; gene_id "Ledus.S3G049500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12090.t1 is derived from g5709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9467257	9469128	.	-	.	Ledus.S4G124600
Ledus.S4	AUGUSTUS	transcript	9467257	9469128	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	stop_codon	9467254	9467256	.	-	0	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	CDS	9467257	9467559	0.88	-	0	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	exon	9467257	9467559	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	intron	9467560	9467673	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	CDS	9467674	9467857	0.92	-	1	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	exon	9467674	9467857	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	intron	9467858	9467932	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	CDS	9467933	9468125	1	-	2	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	exon	9467933	9468125	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	intron	9468126	9468202	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	CDS	9468203	9468411	1	-	1	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	exon	9468203	9468411	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	intron	9468412	9468487	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	CDS	9468488	9468573	1	-	0	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	exon	9468488	9468573	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	intron	9468574	9468654	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	CDS	9468655	9468759	1	-	0	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	exon	9468655	9468759	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	intron	9468760	9468877	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	CDS	9468878	9468980	1	-	1	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	exon	9468878	9468980	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	intron	9468981	9469069	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	CDS	9469070	9469128	0.99	-	0	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	exon	9469070	9469128	.	-	.	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
Ledus.S4	AUGUSTUS	start_codon	9469126	9469128	.	-	0	transcript_id "Ledus.S4G124600.t1"; gene_id "Ledus.S4G124600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg957.t1 is derived from g7818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6308720	6309363	.	+	.	Ledus.S2G083900
Ledus.S2	AUGUSTUS	transcript	6308720	6309363	.	+	.	transcript_id "Ledus.S2G083900.t1"; gene_id "Ledus.S2G083900"
Ledus.S2	AUGUSTUS	start_codon	6308720	6308722	.	+	0	transcript_id "Ledus.S2G083900.t1"; gene_id "Ledus.S2G083900"
Ledus.S2	AUGUSTUS	CDS	6308720	6308874	0.62	+	0	transcript_id "Ledus.S2G083900.t1"; gene_id "Ledus.S2G083900"
Ledus.S2	AUGUSTUS	exon	6308720	6308874	.	+	.	transcript_id "Ledus.S2G083900.t1"; gene_id "Ledus.S2G083900"
Ledus.S2	AUGUSTUS	intron	6308875	6309071	.	+	.	transcript_id "Ledus.S2G083900.t1"; gene_id "Ledus.S2G083900"
Ledus.S2	AUGUSTUS	CDS	6309072	6309363	0.35	+	1	transcript_id "Ledus.S2G083900.t1"; gene_id "Ledus.S2G083900"
Ledus.S2	AUGUSTUS	exon	6309072	6309363	.	+	.	transcript_id "Ledus.S2G083900.t1"; gene_id "Ledus.S2G083900"
Ledus.S2	AUGUSTUS	stop_codon	6309364	6309366	.	+	0	transcript_id "Ledus.S2G083900.t1"; gene_id "Ledus.S2G083900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6512.t1 is derived from g3955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31808187	31812073	.	-	.	Ledus.S1G393300
Ledus.S1	AUGUSTUS	transcript	31808187	31812073	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	stop_codon	31808184	31808186	.	-	0	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	CDS	31808187	31808477	1	-	0	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	exon	31808187	31808477	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	intron	31808478	31808561	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	CDS	31808562	31808950	0.96	-	2	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	exon	31808562	31808950	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	intron	31808951	31809027	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	CDS	31809028	31809096	1	-	2	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	exon	31809028	31809096	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	intron	31809097	31809185	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	CDS	31809186	31809312	1	-	0	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	exon	31809186	31809312	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	intron	31809313	31809400	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	CDS	31809401	31809627	0.97	-	2	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	exon	31809401	31809627	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	intron	31809628	31809736	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	CDS	31809737	31809957	0.51	-	1	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	exon	31809737	31809957	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	intron	31809958	31810043	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	CDS	31810044	31810112	1	-	1	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	exon	31810044	31810112	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	intron	31810113	31810199	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	CDS	31810200	31810271	1	-	1	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	exon	31810200	31810271	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	intron	31810272	31810351	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	CDS	31810352	31810423	1	-	1	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	exon	31810352	31810423	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	intron	31810424	31810515	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	CDS	31810516	31810944	0.98	-	1	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	exon	31810516	31810944	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	intron	31810945	31811037	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	CDS	31811038	31811594	1	-	0	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	exon	31811038	31811594	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	intron	31811595	31811677	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	CDS	31811678	31812073	0.66	-	0	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	exon	31811678	31812073	.	-	.	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
Ledus.S1	AUGUSTUS	start_codon	31812071	31812073	.	-	0	transcript_id "Ledus.S1G393300.t1"; gene_id "Ledus.S1G393300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1528.t1 is derived from g8389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10808529	10810449	.	-	.	Ledus.S2G141000
Ledus.S2	AUGUSTUS	transcript	10808529	10810449	.	-	.	transcript_id "Ledus.S2G141000.t1"; gene_id "Ledus.S2G141000"
Ledus.S2	AUGUSTUS	stop_codon	10808526	10808528	.	-	0	transcript_id "Ledus.S2G141000.t1"; gene_id "Ledus.S2G141000"
Ledus.S2	AUGUSTUS	CDS	10808529	10808675	0.7	-	0	transcript_id "Ledus.S2G141000.t1"; gene_id "Ledus.S2G141000"
Ledus.S2	AUGUSTUS	exon	10808529	10808675	.	-	.	transcript_id "Ledus.S2G141000.t1"; gene_id "Ledus.S2G141000"
Ledus.S2	AUGUSTUS	intron	10808676	10808760	.	-	.	transcript_id "Ledus.S2G141000.t1"; gene_id "Ledus.S2G141000"
Ledus.S2	AUGUSTUS	CDS	10808761	10809129	0.41	-	0	transcript_id "Ledus.S2G141000.t1"; gene_id "Ledus.S2G141000"
Ledus.S2	AUGUSTUS	exon	10808761	10809129	.	-	.	transcript_id "Ledus.S2G141000.t1"; gene_id "Ledus.S2G141000"
Ledus.S2	AUGUSTUS	intron	10809130	10809762	.	-	.	transcript_id "Ledus.S2G141000.t1"; gene_id "Ledus.S2G141000"
Ledus.S2	AUGUSTUS	CDS	10809763	10810449	0.2	-	0	transcript_id "Ledus.S2G141000.t1"; gene_id "Ledus.S2G141000"
Ledus.S2	AUGUSTUS	exon	10809763	10810449	.	-	.	transcript_id "Ledus.S2G141000.t1"; gene_id "Ledus.S2G141000"
Ledus.S2	AUGUSTUS	start_codon	10810447	10810449	.	-	0	transcript_id "Ledus.S2G141000.t1"; gene_id "Ledus.S2G141000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1383.t1 is derived from g8244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9713426	9716431	.	-	.	Ledus.S2G126500
Ledus.S2	AUGUSTUS	transcript	9713426	9716431	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	stop_codon	9713423	9713425	.	-	0	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9713426	9713428	0.9	-	0	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9713426	9713428	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	intron	9713429	9713545	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9713546	9713626	0.89	-	0	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9713546	9713626	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	intron	9713627	9713802	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9713803	9713859	0.72	-	0	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9713803	9713859	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	intron	9713860	9714190	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9714191	9714265	0.73	-	0	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9714191	9714265	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	intron	9714266	9714351	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9714352	9714409	1	-	1	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9714352	9714409	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	intron	9714410	9714486	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9714487	9714611	1	-	0	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9714487	9714611	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	intron	9714612	9714696	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9714697	9714912	0.99	-	0	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9714697	9714912	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	intron	9714913	9715010	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9715011	9715136	0.99	-	0	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9715011	9715136	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	intron	9715137	9715244	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9715245	9715379	0.99	-	0	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9715245	9715379	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	intron	9715380	9715494	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9715495	9715707	1	-	0	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9715495	9715707	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	intron	9715708	9715786	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9715787	9715934	1	-	1	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9715787	9715934	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	intron	9715935	9716108	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9716109	9716222	0.83	-	1	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9716109	9716222	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	intron	9716223	9716333	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	CDS	9716334	9716431	0.65	-	0	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	exon	9716334	9716431	.	-	.	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
Ledus.S2	AUGUSTUS	start_codon	9716429	9716431	.	-	0	transcript_id "Ledus.S2G126500.t1"; gene_id "Ledus.S2G126500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7108.t1 is derived from g6639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1579167	1579421	.	+	.	Ledus.C7G016900
Ledus.C7	AUGUSTUS	transcript	1579167	1579421	.	+	.	transcript_id "Ledus.C7G016900.t1"; gene_id "Ledus.C7G016900"
Ledus.C7	AUGUSTUS	start_codon	1579167	1579169	.	+	0	transcript_id "Ledus.C7G016900.t1"; gene_id "Ledus.C7G016900"
Ledus.C7	AUGUSTUS	CDS	1579167	1579421	0.69	+	0	transcript_id "Ledus.C7G016900.t1"; gene_id "Ledus.C7G016900"
Ledus.C7	AUGUSTUS	exon	1579167	1579421	.	+	.	transcript_id "Ledus.C7G016900.t1"; gene_id "Ledus.C7G016900"
Ledus.C7	AUGUSTUS	stop_codon	1579422	1579424	.	+	0	transcript_id "Ledus.C7G016900.t1"; gene_id "Ledus.C7G016900"
# This transcript jg10300.t2 is derived from g11330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10301.t1 is derived from g11331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14148058	14148318	.	+	.	Ledus.S3G177800
Ledus.S3	AUGUSTUS	transcript	14148058	14148318	.	+	.	transcript_id "Ledus.S3G177800.t1"; gene_id "Ledus.S3G177800"
Ledus.S3	AUGUSTUS	start_codon	14148058	14148060	.	+	0	transcript_id "Ledus.S3G177800.t1"; gene_id "Ledus.S3G177800"
Ledus.S3	AUGUSTUS	CDS	14148058	14148318	0.98	+	0	transcript_id "Ledus.S3G177800.t1"; gene_id "Ledus.S3G177800"
Ledus.S3	AUGUSTUS	exon	14148058	14148318	.	+	.	transcript_id "Ledus.S3G177800.t1"; gene_id "Ledus.S3G177800"
Ledus.S3	AUGUSTUS	stop_codon	14148319	14148321	.	+	0	transcript_id "Ledus.S3G177800.t1"; gene_id "Ledus.S3G177800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7526.t1 is derived from g12197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3600765	3605155	.	+	.	Ledus.S5G030400
Ledus.S5	AUGUSTUS	transcript	3600765	3605155	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	start_codon	3600765	3600767	.	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3600765	3600833	0.99	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3600765	3600833	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3600834	3600919	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3600920	3601045	1	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3600920	3601045	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3601046	3601144	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3601145	3601244	1	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3601145	3601244	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3601245	3601328	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3601329	3601377	1	+	2	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3601329	3601377	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3601378	3601469	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3601470	3601557	1	+	1	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3601470	3601557	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3601558	3601623	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3601624	3601734	0.99	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3601624	3601734	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3601735	3601843	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3601844	3601906	1	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3601844	3601906	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3601907	3602032	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3602033	3602143	1	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3602033	3602143	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3602144	3602278	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3602279	3602344	1	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3602279	3602344	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3602345	3602526	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3602527	3602604	1	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3602527	3602604	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3602605	3602692	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3602693	3602770	1	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3602693	3602770	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3602771	3602940	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3602941	3603007	1	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3602941	3603007	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3603008	3603219	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3603220	3603305	1	+	2	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3603220	3603305	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3603306	3603623	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3603624	3603656	1	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3603624	3603656	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3603657	3603893	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3603894	3603926	1	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3603894	3603926	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3603927	3604066	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3604067	3604167	1	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3604067	3604167	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3604168	3604242	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3604243	3604328	1	+	1	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3604243	3604328	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3604329	3604422	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3604423	3604529	1	+	2	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3604423	3604529	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3604530	3604655	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3604656	3604733	1	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3604656	3604733	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3604734	3604868	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3604869	3604873	0.99	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3604869	3604873	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3604874	3604975	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3604976	3605037	0.93	+	1	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3604976	3605037	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	intron	3605038	3605117	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	CDS	3605118	3605155	1	+	2	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	exon	3605118	3605155	.	+	.	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
Ledus.S5	AUGUSTUS	stop_codon	3605156	3605158	.	+	0	transcript_id "Ledus.S5G030400.t1"; gene_id "Ledus.S5G030400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10075.t1 is derived from g11105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12529710	12531476	.	+	.	Ledus.S3G155200
Ledus.S3	AUGUSTUS	transcript	12529710	12531476	.	+	.	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	start_codon	12529710	12529712	.	+	0	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	CDS	12529710	12529777	0.37	+	0	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	exon	12529710	12529777	.	+	.	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	intron	12529778	12529850	.	+	.	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	CDS	12529851	12529981	1	+	1	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	exon	12529851	12529981	.	+	.	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	intron	12529982	12530073	.	+	.	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	CDS	12530074	12530179	1	+	2	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	exon	12530074	12530179	.	+	.	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	intron	12530180	12530281	.	+	.	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	CDS	12530282	12530590	1	+	1	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	exon	12530282	12530590	.	+	.	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	intron	12530591	12530688	.	+	.	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	CDS	12530689	12531158	1	+	1	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	exon	12530689	12531158	.	+	.	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	intron	12531159	12531255	.	+	.	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	CDS	12531256	12531476	1	+	2	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	exon	12531256	12531476	.	+	.	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
Ledus.S3	AUGUSTUS	stop_codon	12531477	12531479	.	+	0	transcript_id "Ledus.S3G155200.t1"; gene_id "Ledus.S3G155200"
# This transcript jg2796.t2 is derived from g230.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2797.t1 is derived from g231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3830186	3831233	.	-	.	Ledus.S1G021800
Ledus.S1	AUGUSTUS	transcript	3830186	3831233	.	-	.	transcript_id "Ledus.S1G021800.t1"; gene_id "Ledus.S1G021800"
Ledus.S1	AUGUSTUS	stop_codon	3830183	3830185	.	-	0	transcript_id "Ledus.S1G021800.t1"; gene_id "Ledus.S1G021800"
Ledus.S1	AUGUSTUS	CDS	3830186	3830510	0.99	-	1	transcript_id "Ledus.S1G021800.t1"; gene_id "Ledus.S1G021800"
Ledus.S1	AUGUSTUS	exon	3830186	3830510	.	-	.	transcript_id "Ledus.S1G021800.t1"; gene_id "Ledus.S1G021800"
Ledus.S1	AUGUSTUS	intron	3830511	3830589	.	-	.	transcript_id "Ledus.S1G021800.t1"; gene_id "Ledus.S1G021800"
Ledus.S1	AUGUSTUS	CDS	3830590	3831233	0.86	-	0	transcript_id "Ledus.S1G021800.t1"; gene_id "Ledus.S1G021800"
Ledus.S1	AUGUSTUS	exon	3830590	3831233	.	-	.	transcript_id "Ledus.S1G021800.t1"; gene_id "Ledus.S1G021800"
Ledus.S1	AUGUSTUS	start_codon	3831231	3831233	.	-	0	transcript_id "Ledus.S1G021800.t1"; gene_id "Ledus.S1G021800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2426.t1 is derived from g9289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18058670	18059363	.	+	.	Ledus.S2G230800
Ledus.S2	AUGUSTUS	transcript	18058670	18059363	.	+	.	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	start_codon	18058670	18058672	.	+	0	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	CDS	18058670	18058786	0.99	+	0	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	exon	18058670	18058786	.	+	.	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	intron	18058787	18058894	.	+	.	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	CDS	18058895	18058998	0.79	+	0	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	exon	18058895	18058998	.	+	.	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	intron	18058999	18059102	.	+	.	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	CDS	18059103	18059232	1	+	1	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	exon	18059103	18059232	.	+	.	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	intron	18059233	18059327	.	+	.	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	CDS	18059328	18059363	1	+	0	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	exon	18059328	18059363	.	+	.	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
Ledus.S2	AUGUSTUS	stop_codon	18059364	18059366	.	+	0	transcript_id "Ledus.S2G230800.t1"; gene_id "Ledus.S2G230800"
# This transcript jg11081.t2 is derived from g4699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11082.t1 is derived from g4700.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1644233	1646452	.	+	.	Ledus.S4G023800
Ledus.S4	AUGUSTUS	transcript	1644233	1646452	.	+	.	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	start_codon	1644233	1644235	.	+	0	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	CDS	1644233	1644251	0.59	+	0	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	exon	1644233	1644251	.	+	.	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	intron	1644252	1644369	.	+	.	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	CDS	1644370	1644468	0.42	+	2	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	exon	1644370	1644468	.	+	.	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	intron	1644469	1644577	.	+	.	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	CDS	1644578	1645656	0.37	+	2	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	exon	1644578	1645656	.	+	.	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	intron	1645657	1645744	.	+	.	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	CDS	1645745	1645991	0.92	+	0	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	exon	1645745	1645991	.	+	.	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	intron	1645992	1646074	.	+	.	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	CDS	1646075	1646277	1	+	2	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	exon	1646075	1646277	.	+	.	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	intron	1646278	1646362	.	+	.	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	CDS	1646363	1646452	1	+	0	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	exon	1646363	1646452	.	+	.	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	stop_codon	1646453	1646455	.	+	0	transcript_id "Ledus.S4G023800.t1"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	transcript	1644233	1645306	.	+	.	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	start_codon	1644233	1644235	.	+	0	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	CDS	1644233	1644251	0.69	+	0	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	exon	1644233	1644251	.	+	.	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	intron	1644252	1644369	.	+	.	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	CDS	1644370	1644468	0.52	+	2	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	exon	1644370	1644468	.	+	.	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	intron	1644469	1644577	.	+	.	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	CDS	1644578	1645205	0.47	+	2	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	exon	1644578	1645205	.	+	.	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	intron	1645206	1645299	.	+	.	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	CDS	1645300	1645306	0.9	+	1	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	exon	1645300	1645306	.	+	.	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
Ledus.S4	AUGUSTUS	stop_codon	1645307	1645309	.	+	0	transcript_id "Ledus.S4G023800.t2"; gene_id "Ledus.S4G023800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4695.t1 is derived from g2133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19098880	19101062	.	+	.	Ledus.S1G211600
Ledus.S1	AUGUSTUS	transcript	19098880	19101062	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	start_codon	19098880	19098882	.	+	0	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	CDS	19098880	19098895	1	+	0	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	exon	19098880	19098895	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	intron	19098896	19098972	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	CDS	19098973	19099087	1	+	2	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	exon	19098973	19099087	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	intron	19099088	19099292	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	CDS	19099293	19099367	1	+	1	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	exon	19099293	19099367	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	intron	19099368	19099455	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	CDS	19099456	19099530	1	+	1	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	exon	19099456	19099530	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	intron	19099531	19099730	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	CDS	19099731	19099961	1	+	1	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	exon	19099731	19099961	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	intron	19099962	19100048	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	CDS	19100049	19100082	1	+	1	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	exon	19100049	19100082	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	intron	19100083	19100186	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	CDS	19100187	19100296	1	+	0	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	exon	19100187	19100296	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	intron	19100297	19100383	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	CDS	19100384	19100470	1	+	1	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	exon	19100384	19100470	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	intron	19100471	19100539	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	CDS	19100540	19100626	0.89	+	1	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	exon	19100540	19100626	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	intron	19100627	19100735	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	CDS	19100736	19100801	0.88	+	1	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	exon	19100736	19100801	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	intron	19100802	19100902	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	CDS	19100903	19101062	0.87	+	1	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	exon	19100903	19101062	.	+	.	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
Ledus.S1	AUGUSTUS	stop_codon	19101063	19101065	.	+	0	transcript_id "Ledus.S1G211600.t1"; gene_id "Ledus.S1G211600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2551.t1 is derived from g9414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18891587	18895187	.	+	.	Ledus.S2G243300
Ledus.S2	AUGUSTUS	transcript	18891587	18895187	.	+	.	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	start_codon	18891587	18891589	.	+	0	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	CDS	18891587	18893600	0.92	+	0	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	exon	18891587	18893600	.	+	.	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	intron	18893601	18893785	.	+	.	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	CDS	18893786	18893936	1	+	2	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	exon	18893786	18893936	.	+	.	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	intron	18893937	18894102	.	+	.	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	CDS	18894103	18894277	1	+	1	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	exon	18894103	18894277	.	+	.	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	intron	18894278	18894472	.	+	.	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	CDS	18894473	18894751	1	+	0	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	exon	18894473	18894751	.	+	.	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	intron	18894752	18894887	.	+	.	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	CDS	18894888	18895187	0.49	+	0	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	exon	18894888	18895187	.	+	.	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
Ledus.S2	AUGUSTUS	stop_codon	18895188	18895190	.	+	0	transcript_id "Ledus.S2G243300.t1"; gene_id "Ledus.S2G243300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4563.t1 is derived from g2000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17737052	17738050	.	-	.	Ledus.S1G198400
Ledus.S1	AUGUSTUS	transcript	17737052	17738050	.	-	.	transcript_id "Ledus.S1G198400.t1"; gene_id "Ledus.S1G198400"
Ledus.S1	AUGUSTUS	stop_codon	17737049	17737051	.	-	0	transcript_id "Ledus.S1G198400.t1"; gene_id "Ledus.S1G198400"
Ledus.S1	AUGUSTUS	CDS	17737052	17737276	0.57	-	0	transcript_id "Ledus.S1G198400.t1"; gene_id "Ledus.S1G198400"
Ledus.S1	AUGUSTUS	exon	17737052	17737276	.	-	.	transcript_id "Ledus.S1G198400.t1"; gene_id "Ledus.S1G198400"
Ledus.S1	AUGUSTUS	intron	17737277	17737530	.	-	.	transcript_id "Ledus.S1G198400.t1"; gene_id "Ledus.S1G198400"
Ledus.S1	AUGUSTUS	CDS	17737531	17737604	0.35	-	2	transcript_id "Ledus.S1G198400.t1"; gene_id "Ledus.S1G198400"
Ledus.S1	AUGUSTUS	exon	17737531	17737604	.	-	.	transcript_id "Ledus.S1G198400.t1"; gene_id "Ledus.S1G198400"
Ledus.S1	AUGUSTUS	intron	17737605	17737704	.	-	.	transcript_id "Ledus.S1G198400.t1"; gene_id "Ledus.S1G198400"
Ledus.S1	AUGUSTUS	CDS	17737705	17738050	0.57	-	0	transcript_id "Ledus.S1G198400.t1"; gene_id "Ledus.S1G198400"
Ledus.S1	AUGUSTUS	exon	17737705	17738050	.	-	.	transcript_id "Ledus.S1G198400.t1"; gene_id "Ledus.S1G198400"
Ledus.S1	AUGUSTUS	start_codon	17738048	17738050	.	-	0	transcript_id "Ledus.S1G198400.t1"; gene_id "Ledus.S1G198400"
# This transcript jg3771.t2 is derived from g1207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3772.t1 is derived from g1208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11900886	11901538	.	-	.	Ledus.S1G119300
Ledus.S1	AUGUSTUS	transcript	11900886	11901538	.	-	.	transcript_id "Ledus.S1G119300.t1"; gene_id "Ledus.S1G119300"
Ledus.S1	AUGUSTUS	stop_codon	11900883	11900885	.	-	0	transcript_id "Ledus.S1G119300.t1"; gene_id "Ledus.S1G119300"
Ledus.S1	AUGUSTUS	CDS	11900886	11901050	0.79	-	0	transcript_id "Ledus.S1G119300.t1"; gene_id "Ledus.S1G119300"
Ledus.S1	AUGUSTUS	exon	11900886	11901050	.	-	.	transcript_id "Ledus.S1G119300.t1"; gene_id "Ledus.S1G119300"
Ledus.S1	AUGUSTUS	intron	11901051	11901157	.	-	.	transcript_id "Ledus.S1G119300.t1"; gene_id "Ledus.S1G119300"
Ledus.S1	AUGUSTUS	CDS	11901158	11901538	0.18	-	0	transcript_id "Ledus.S1G119300.t1"; gene_id "Ledus.S1G119300"
Ledus.S1	AUGUSTUS	exon	11901158	11901538	.	-	.	transcript_id "Ledus.S1G119300.t1"; gene_id "Ledus.S1G119300"
Ledus.S1	AUGUSTUS	start_codon	11901536	11901538	.	-	0	transcript_id "Ledus.S1G119300.t1"; gene_id "Ledus.S1G119300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8658.t1 is derived from g9688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1179315	1181023	.	+	.	Ledus.S3G013500
Ledus.S3	AUGUSTUS	transcript	1179315	1181023	.	+	.	transcript_id "Ledus.S3G013500.t1"; gene_id "Ledus.S3G013500"
Ledus.S3	AUGUSTUS	start_codon	1179315	1179317	.	+	0	transcript_id "Ledus.S3G013500.t1"; gene_id "Ledus.S3G013500"
Ledus.S3	AUGUSTUS	CDS	1179315	1179666	0.81	+	0	transcript_id "Ledus.S3G013500.t1"; gene_id "Ledus.S3G013500"
Ledus.S3	AUGUSTUS	exon	1179315	1179666	.	+	.	transcript_id "Ledus.S3G013500.t1"; gene_id "Ledus.S3G013500"
Ledus.S3	AUGUSTUS	intron	1179667	1179763	.	+	.	transcript_id "Ledus.S3G013500.t1"; gene_id "Ledus.S3G013500"
Ledus.S3	AUGUSTUS	CDS	1179764	1180161	1	+	2	transcript_id "Ledus.S3G013500.t1"; gene_id "Ledus.S3G013500"
Ledus.S3	AUGUSTUS	exon	1179764	1180161	.	+	.	transcript_id "Ledus.S3G013500.t1"; gene_id "Ledus.S3G013500"
Ledus.S3	AUGUSTUS	intron	1180162	1180276	.	+	.	transcript_id "Ledus.S3G013500.t1"; gene_id "Ledus.S3G013500"
Ledus.S3	AUGUSTUS	CDS	1180277	1181023	1	+	0	transcript_id "Ledus.S3G013500.t1"; gene_id "Ledus.S3G013500"
Ledus.S3	AUGUSTUS	exon	1180277	1181023	.	+	.	transcript_id "Ledus.S3G013500.t1"; gene_id "Ledus.S3G013500"
Ledus.S3	AUGUSTUS	stop_codon	1181024	1181026	.	+	0	transcript_id "Ledus.S3G013500.t1"; gene_id "Ledus.S3G013500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5058.t1 is derived from g2497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21336272	21336947	.	+	.	Ledus.S1G247900
Ledus.S1	AUGUSTUS	transcript	21336272	21336947	.	+	.	transcript_id "Ledus.S1G247900.t1"; gene_id "Ledus.S1G247900"
Ledus.S1	AUGUSTUS	start_codon	21336272	21336274	.	+	0	transcript_id "Ledus.S1G247900.t1"; gene_id "Ledus.S1G247900"
Ledus.S1	AUGUSTUS	CDS	21336272	21336302	0.98	+	0	transcript_id "Ledus.S1G247900.t1"; gene_id "Ledus.S1G247900"
Ledus.S1	AUGUSTUS	exon	21336272	21336302	.	+	.	transcript_id "Ledus.S1G247900.t1"; gene_id "Ledus.S1G247900"
Ledus.S1	AUGUSTUS	intron	21336303	21336381	.	+	.	transcript_id "Ledus.S1G247900.t1"; gene_id "Ledus.S1G247900"
Ledus.S1	AUGUSTUS	CDS	21336382	21336645	1	+	2	transcript_id "Ledus.S1G247900.t1"; gene_id "Ledus.S1G247900"
Ledus.S1	AUGUSTUS	exon	21336382	21336645	.	+	.	transcript_id "Ledus.S1G247900.t1"; gene_id "Ledus.S1G247900"
Ledus.S1	AUGUSTUS	intron	21336646	21336738	.	+	.	transcript_id "Ledus.S1G247900.t1"; gene_id "Ledus.S1G247900"
Ledus.S1	AUGUSTUS	CDS	21336739	21336947	0.81	+	2	transcript_id "Ledus.S1G247900.t1"; gene_id "Ledus.S1G247900"
Ledus.S1	AUGUSTUS	exon	21336739	21336947	.	+	.	transcript_id "Ledus.S1G247900.t1"; gene_id "Ledus.S1G247900"
Ledus.S1	AUGUSTUS	stop_codon	21336948	21336950	.	+	0	transcript_id "Ledus.S1G247900.t1"; gene_id "Ledus.S1G247900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3187.t1 is derived from g622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6668071	6668808	.	-	.	Ledus.S1G060800
Ledus.S1	AUGUSTUS	transcript	6668071	6668808	.	-	.	transcript_id "Ledus.S1G060800.t1"; gene_id "Ledus.S1G060800"
Ledus.S1	AUGUSTUS	stop_codon	6668068	6668070	.	-	0	transcript_id "Ledus.S1G060800.t1"; gene_id "Ledus.S1G060800"
Ledus.S1	AUGUSTUS	CDS	6668071	6668145	1	-	0	transcript_id "Ledus.S1G060800.t1"; gene_id "Ledus.S1G060800"
Ledus.S1	AUGUSTUS	exon	6668071	6668145	.	-	.	transcript_id "Ledus.S1G060800.t1"; gene_id "Ledus.S1G060800"
Ledus.S1	AUGUSTUS	intron	6668146	6668226	.	-	.	transcript_id "Ledus.S1G060800.t1"; gene_id "Ledus.S1G060800"
Ledus.S1	AUGUSTUS	CDS	6668227	6668808	1	-	0	transcript_id "Ledus.S1G060800.t1"; gene_id "Ledus.S1G060800"
Ledus.S1	AUGUSTUS	exon	6668227	6668808	.	-	.	transcript_id "Ledus.S1G060800.t1"; gene_id "Ledus.S1G060800"
Ledus.S1	AUGUSTUS	start_codon	6668806	6668808	.	-	0	transcript_id "Ledus.S1G060800.t1"; gene_id "Ledus.S1G060800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg990.t1 is derived from g7851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6527122	6527626	.	-	.	Ledus.S2G087200
Ledus.S2	AUGUSTUS	transcript	6527122	6527626	.	-	.	transcript_id "Ledus.S2G087200.t1"; gene_id "Ledus.S2G087200"
Ledus.S2	AUGUSTUS	stop_codon	6527119	6527121	.	-	0	transcript_id "Ledus.S2G087200.t1"; gene_id "Ledus.S2G087200"
Ledus.S2	AUGUSTUS	CDS	6527122	6527136	0.99	-	0	transcript_id "Ledus.S2G087200.t1"; gene_id "Ledus.S2G087200"
Ledus.S2	AUGUSTUS	exon	6527122	6527136	.	-	.	transcript_id "Ledus.S2G087200.t1"; gene_id "Ledus.S2G087200"
Ledus.S2	AUGUSTUS	intron	6527137	6527277	.	-	.	transcript_id "Ledus.S2G087200.t1"; gene_id "Ledus.S2G087200"
Ledus.S2	AUGUSTUS	CDS	6527278	6527478	1	-	0	transcript_id "Ledus.S2G087200.t1"; gene_id "Ledus.S2G087200"
Ledus.S2	AUGUSTUS	exon	6527278	6527478	.	-	.	transcript_id "Ledus.S2G087200.t1"; gene_id "Ledus.S2G087200"
Ledus.S2	AUGUSTUS	intron	6527479	6527557	.	-	.	transcript_id "Ledus.S2G087200.t1"; gene_id "Ledus.S2G087200"
Ledus.S2	AUGUSTUS	CDS	6527558	6527626	0.95	-	0	transcript_id "Ledus.S2G087200.t1"; gene_id "Ledus.S2G087200"
Ledus.S2	AUGUSTUS	exon	6527558	6527626	.	-	.	transcript_id "Ledus.S2G087200.t1"; gene_id "Ledus.S2G087200"
Ledus.S2	AUGUSTUS	start_codon	6527624	6527626	.	-	0	transcript_id "Ledus.S2G087200.t1"; gene_id "Ledus.S2G087200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8024.t1 is derived from g12695.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8575714	8577823	.	-	.	Ledus.S5G080200
Ledus.S5	AUGUSTUS	transcript	8575714	8577823	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	stop_codon	8575711	8575713	.	-	0	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8575714	8576343	0.99	-	0	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8575714	8576343	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	intron	8576344	8576449	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8576450	8576728	1	-	0	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8576450	8576728	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	intron	8576729	8576891	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8576892	8577032	1	-	0	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8576892	8577032	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	intron	8577033	8577194	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8577195	8577243	1	-	1	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8577195	8577243	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	intron	8577244	8577308	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8577309	8577337	0.98	-	0	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8577309	8577337	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	intron	8577338	8577436	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8577437	8577584	1	-	1	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8577437	8577584	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	intron	8577585	8577671	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8577672	8577823	0.88	-	0	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8577672	8577823	.	-	.	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	start_codon	8577821	8577823	.	-	0	transcript_id "Ledus.S5G080200.t1"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	transcript	8575714	8577823	.	-	.	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	stop_codon	8575711	8575713	.	-	0	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8575714	8576343	1	-	0	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8575714	8576343	.	-	.	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	intron	8576344	8576449	.	-	.	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8576450	8576728	1	-	0	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8576450	8576728	.	-	.	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	intron	8576729	8576891	.	-	.	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8576892	8577032	1	-	0	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8576892	8577032	.	-	.	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	intron	8577033	8577194	.	-	.	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8577195	8577326	0.86	-	0	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8577195	8577326	.	-	.	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	intron	8577327	8577436	.	-	.	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8577437	8577584	1	-	1	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8577437	8577584	.	-	.	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	intron	8577585	8577671	.	-	.	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	CDS	8577672	8577823	0.91	-	0	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	exon	8577672	8577823	.	-	.	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
Ledus.S5	AUGUSTUS	start_codon	8577821	8577823	.	-	0	transcript_id "Ledus.S5G080200.t2"; gene_id "Ledus.S5G080200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7703.t1 is derived from g12374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5307938	5310511	.	-	.	Ledus.S5G048100
Ledus.S5	AUGUSTUS	transcript	5307938	5310511	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	stop_codon	5307935	5307937	.	-	0	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5307938	5308162	0.97	-	0	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5307938	5308162	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	intron	5308163	5308243	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5308244	5308381	1	-	0	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5308244	5308381	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	intron	5308382	5308534	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5308535	5308687	1	-	0	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5308535	5308687	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	intron	5308688	5309268	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5309269	5309396	1	-	2	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5309269	5309396	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	intron	5309397	5309777	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5309778	5309889	1	-	0	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5309778	5309889	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	intron	5309890	5310114	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5310115	5310231	0.99	-	0	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5310115	5310231	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	intron	5310232	5310346	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5310347	5310511	0.85	-	0	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5310347	5310511	.	-	.	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	start_codon	5310509	5310511	.	-	0	transcript_id "Ledus.S5G048100.t1"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	transcript	5307938	5310511	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	stop_codon	5307935	5307937	.	-	0	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5307938	5308162	1	-	0	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5307938	5308162	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	intron	5308163	5308243	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5308244	5308381	1	-	0	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5308244	5308381	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	intron	5308382	5308534	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5308535	5308687	1	-	0	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5308535	5308687	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	intron	5308688	5309268	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5309269	5309399	1	-	2	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5309269	5309399	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	intron	5309400	5309777	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5309778	5309889	1	-	0	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5309778	5309889	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	intron	5309890	5310114	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5310115	5310231	1	-	0	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5310115	5310231	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	intron	5310232	5310346	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	CDS	5310347	5310511	0.78	-	0	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	exon	5310347	5310511	.	-	.	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
Ledus.S5	AUGUSTUS	start_codon	5310509	5310511	.	-	0	transcript_id "Ledus.S5G048100.t2"; gene_id "Ledus.S5G048100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4135.t1 is derived from g1571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14882548	14885640	.	+	.	Ledus.S1G155600
Ledus.S1	AUGUSTUS	transcript	14882548	14885640	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	start_codon	14882548	14882550	.	+	0	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	CDS	14882548	14882738	0.64	+	0	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	exon	14882548	14882738	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	intron	14882739	14882857	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	CDS	14882858	14883168	1	+	1	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	exon	14882858	14883168	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	intron	14883169	14883263	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	CDS	14883264	14883478	0.98	+	2	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	exon	14883264	14883478	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	intron	14883479	14883564	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	CDS	14883565	14883588	0.99	+	0	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	exon	14883565	14883588	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	intron	14883589	14883701	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	CDS	14883702	14883882	0.87	+	0	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	exon	14883702	14883882	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	intron	14883883	14883997	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	CDS	14883998	14884217	1	+	2	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	exon	14883998	14884217	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	intron	14884218	14884304	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	CDS	14884305	14884440	0.99	+	1	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	exon	14884305	14884440	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	intron	14884441	14884555	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	CDS	14884556	14884628	0.82	+	0	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	exon	14884556	14884628	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	intron	14884629	14884700	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	CDS	14884701	14884829	0.81	+	2	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	exon	14884701	14884829	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	intron	14884830	14884939	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	CDS	14884940	14884983	1	+	2	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	exon	14884940	14884983	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	intron	14884984	14885371	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	CDS	14885372	14885434	0.98	+	0	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	exon	14885372	14885434	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	intron	14885435	14885535	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	CDS	14885536	14885640	1	+	0	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	exon	14885536	14885640	.	+	.	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
Ledus.S1	AUGUSTUS	stop_codon	14885641	14885643	.	+	0	transcript_id "Ledus.S1G155600.t1"; gene_id "Ledus.S1G155600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5583.t1 is derived from g3022.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25257858	25260904	.	-	.	Ledus.S1G300400
Ledus.S1	AUGUSTUS	transcript	25257858	25260904	.	-	.	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	stop_codon	25257855	25257857	.	-	0	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	CDS	25257858	25258113	0.95	-	1	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	exon	25257858	25258113	.	-	.	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	intron	25258114	25258233	.	-	.	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	CDS	25258234	25258430	1	-	0	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	exon	25258234	25258430	.	-	.	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	intron	25258431	25258527	.	-	.	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	CDS	25258528	25258744	1	-	1	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	exon	25258528	25258744	.	-	.	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	intron	25258745	25258839	.	-	.	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	CDS	25258840	25258921	1	-	2	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	exon	25258840	25258921	.	-	.	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	intron	25258922	25259014	.	-	.	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	CDS	25259015	25259141	1	-	0	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	exon	25259015	25259141	.	-	.	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	intron	25259142	25259230	.	-	.	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	CDS	25259231	25260904	1	-	0	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	exon	25259231	25260904	.	-	.	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	start_codon	25260902	25260904	.	-	0	transcript_id "Ledus.S1G300400.t1"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	transcript	25257858	25260904	.	-	.	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	stop_codon	25257855	25257857	.	-	0	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	CDS	25257858	25258113	0.87	-	1	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	exon	25257858	25258113	.	-	.	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	intron	25258114	25258233	.	-	.	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	CDS	25258234	25258430	1	-	0	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	exon	25258234	25258430	.	-	.	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	intron	25258431	25258527	.	-	.	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	CDS	25258528	25258744	1	-	1	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	exon	25258528	25258744	.	-	.	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	intron	25258745	25258839	.	-	.	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	CDS	25258840	25258918	1	-	2	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	exon	25258840	25258918	.	-	.	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	intron	25258919	25259014	.	-	.	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	CDS	25259015	25259141	1	-	0	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	exon	25259015	25259141	.	-	.	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	intron	25259142	25259230	.	-	.	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	CDS	25259231	25260904	1	-	0	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	exon	25259231	25260904	.	-	.	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
Ledus.S1	AUGUSTUS	start_codon	25260902	25260904	.	-	0	transcript_id "Ledus.S1G300400.t2"; gene_id "Ledus.S1G300400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1898.t1 is derived from g8761.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13258690	13260310	.	-	.	Ledus.S2G178000
Ledus.S2	AUGUSTUS	transcript	13258690	13260310	.	-	.	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	stop_codon	13258687	13258689	.	-	0	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	CDS	13258690	13259042	0.85	-	2	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	exon	13258690	13259042	.	-	.	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	intron	13259043	13259167	.	-	.	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	CDS	13259168	13259232	1	-	1	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	exon	13259168	13259232	.	-	.	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	intron	13259233	13259336	.	-	.	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	CDS	13259337	13259405	1	-	1	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	exon	13259337	13259405	.	-	.	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	intron	13259406	13259570	.	-	.	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	CDS	13259571	13259845	1	-	0	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	exon	13259571	13259845	.	-	.	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	intron	13259846	13259930	.	-	.	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	CDS	13259931	13260016	1	-	2	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	exon	13259931	13260016	.	-	.	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	intron	13260017	13260195	.	-	.	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	CDS	13260196	13260310	1	-	0	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	exon	13260196	13260310	.	-	.	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	start_codon	13260308	13260310	.	-	0	transcript_id "Ledus.S2G178000.t1"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	transcript	13258690	13260310	.	-	.	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	stop_codon	13258687	13258689	.	-	0	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	CDS	13258690	13259042	0.83	-	2	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	exon	13258690	13259042	.	-	.	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	intron	13259043	13259167	.	-	.	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	CDS	13259168	13259232	1	-	1	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	exon	13259168	13259232	.	-	.	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	intron	13259233	13259336	.	-	.	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	CDS	13259337	13259405	1	-	1	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	exon	13259337	13259405	.	-	.	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	intron	13259406	13259570	.	-	.	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	CDS	13259571	13259845	1	-	0	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	exon	13259571	13259845	.	-	.	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	intron	13259846	13259930	.	-	.	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	CDS	13259931	13260016	1	-	2	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	exon	13259931	13260016	.	-	.	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	intron	13260017	13260255	.	-	.	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	CDS	13260256	13260310	1	-	0	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	exon	13260256	13260310	.	-	.	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
Ledus.S2	AUGUSTUS	start_codon	13260308	13260310	.	-	0	transcript_id "Ledus.S2G178000.t2"; gene_id "Ledus.S2G178000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5508.t1 is derived from g2947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24670149	24670358	.	+	.	Ledus.S1G292900
Ledus.S1	AUGUSTUS	transcript	24670149	24670358	.	+	.	transcript_id "Ledus.S1G292900.t1"; gene_id "Ledus.S1G292900"
Ledus.S1	AUGUSTUS	start_codon	24670149	24670151	.	+	0	transcript_id "Ledus.S1G292900.t1"; gene_id "Ledus.S1G292900"
Ledus.S1	AUGUSTUS	CDS	24670149	24670358	0.99	+	0	transcript_id "Ledus.S1G292900.t1"; gene_id "Ledus.S1G292900"
Ledus.S1	AUGUSTUS	exon	24670149	24670358	.	+	.	transcript_id "Ledus.S1G292900.t1"; gene_id "Ledus.S1G292900"
Ledus.S1	AUGUSTUS	stop_codon	24670359	24670361	.	+	0	transcript_id "Ledus.S1G292900.t1"; gene_id "Ledus.S1G292900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4237.t1 is derived from g1673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15705675	15706630	.	-	.	Ledus.S1G165800
Ledus.S1	AUGUSTUS	transcript	15705675	15706630	.	-	.	transcript_id "Ledus.S1G165800.t1"; gene_id "Ledus.S1G165800"
Ledus.S1	AUGUSTUS	stop_codon	15705672	15705674	.	-	0	transcript_id "Ledus.S1G165800.t1"; gene_id "Ledus.S1G165800"
Ledus.S1	AUGUSTUS	CDS	15705675	15706100	0.33	-	0	transcript_id "Ledus.S1G165800.t1"; gene_id "Ledus.S1G165800"
Ledus.S1	AUGUSTUS	exon	15705675	15706100	.	-	.	transcript_id "Ledus.S1G165800.t1"; gene_id "Ledus.S1G165800"
Ledus.S1	AUGUSTUS	intron	15706101	15706186	.	-	.	transcript_id "Ledus.S1G165800.t1"; gene_id "Ledus.S1G165800"
Ledus.S1	AUGUSTUS	CDS	15706187	15706630	0.24	-	0	transcript_id "Ledus.S1G165800.t1"; gene_id "Ledus.S1G165800"
Ledus.S1	AUGUSTUS	exon	15706187	15706630	.	-	.	transcript_id "Ledus.S1G165800.t1"; gene_id "Ledus.S1G165800"
Ledus.S1	AUGUSTUS	start_codon	15706628	15706630	.	-	0	transcript_id "Ledus.S1G165800.t1"; gene_id "Ledus.S1G165800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3530.t1 is derived from g966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9210462	9210815	.	+	.	Ledus.S1G095100
Ledus.S1	AUGUSTUS	transcript	9210462	9210815	.	+	.	transcript_id "Ledus.S1G095100.t1"; gene_id "Ledus.S1G095100"
Ledus.S1	AUGUSTUS	start_codon	9210462	9210464	.	+	0	transcript_id "Ledus.S1G095100.t1"; gene_id "Ledus.S1G095100"
Ledus.S1	AUGUSTUS	CDS	9210462	9210815	0.96	+	0	transcript_id "Ledus.S1G095100.t1"; gene_id "Ledus.S1G095100"
Ledus.S1	AUGUSTUS	exon	9210462	9210815	.	+	.	transcript_id "Ledus.S1G095100.t1"; gene_id "Ledus.S1G095100"
Ledus.S1	AUGUSTUS	stop_codon	9210816	9210818	.	+	0	transcript_id "Ledus.S1G095100.t1"; gene_id "Ledus.S1G095100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3538.t1 is derived from g974.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9337160	9339003	.	-	.	Ledus.S1G095900
Ledus.S1	AUGUSTUS	transcript	9337160	9339003	.	-	.	transcript_id "Ledus.S1G095900.t1"; gene_id "Ledus.S1G095900"
Ledus.S1	AUGUSTUS	stop_codon	9337157	9337159	.	-	0	transcript_id "Ledus.S1G095900.t1"; gene_id "Ledus.S1G095900"
Ledus.S1	AUGUSTUS	CDS	9337160	9337708	1	-	0	transcript_id "Ledus.S1G095900.t1"; gene_id "Ledus.S1G095900"
Ledus.S1	AUGUSTUS	exon	9337160	9337708	.	-	.	transcript_id "Ledus.S1G095900.t1"; gene_id "Ledus.S1G095900"
Ledus.S1	AUGUSTUS	intron	9337709	9337810	.	-	.	transcript_id "Ledus.S1G095900.t1"; gene_id "Ledus.S1G095900"
Ledus.S1	AUGUSTUS	CDS	9337811	9338625	0.99	-	2	transcript_id "Ledus.S1G095900.t1"; gene_id "Ledus.S1G095900"
Ledus.S1	AUGUSTUS	exon	9337811	9338625	.	-	.	transcript_id "Ledus.S1G095900.t1"; gene_id "Ledus.S1G095900"
Ledus.S1	AUGUSTUS	intron	9338626	9338717	.	-	.	transcript_id "Ledus.S1G095900.t1"; gene_id "Ledus.S1G095900"
Ledus.S1	AUGUSTUS	CDS	9338718	9339003	0.79	-	0	transcript_id "Ledus.S1G095900.t1"; gene_id "Ledus.S1G095900"
Ledus.S1	AUGUSTUS	exon	9338718	9339003	.	-	.	transcript_id "Ledus.S1G095900.t1"; gene_id "Ledus.S1G095900"
Ledus.S1	AUGUSTUS	start_codon	9339001	9339003	.	-	0	transcript_id "Ledus.S1G095900.t1"; gene_id "Ledus.S1G095900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10773.t1 is derived from g11805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17578652	17581608	.	-	.	Ledus.S3G225000
Ledus.S3	AUGUSTUS	transcript	17578652	17581608	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	stop_codon	17578649	17578651	.	-	0	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17578652	17578740	0.96	-	2	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17578652	17578740	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17578741	17578841	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17578842	17578960	0.96	-	1	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17578842	17578960	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17578961	17579043	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17579044	17579153	1	-	0	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17579044	17579153	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17579154	17579263	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17579264	17579365	1	-	0	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17579264	17579365	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17579366	17579488	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17579489	17579638	1	-	0	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17579489	17579638	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17579639	17579728	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17579729	17579887	1	-	0	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17579729	17579887	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17579888	17579993	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17579994	17580170	1	-	0	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17579994	17580170	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17580171	17580261	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17580262	17580351	0.86	-	0	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17580262	17580351	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17580352	17580469	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17580470	17580589	1	-	0	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17580470	17580589	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17580590	17580676	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17580677	17580784	0.55	-	0	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17580677	17580784	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17580785	17580882	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17580883	17581019	0.66	-	2	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17580883	17581019	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17581020	17581116	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17581117	17581313	0.39	-	1	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17581117	17581313	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17581314	17581391	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17581392	17581405	0.39	-	0	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17581392	17581405	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	intron	17581406	17581590	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	CDS	17581591	17581608	0.27	-	0	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	exon	17581591	17581608	.	-	.	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
Ledus.S3	AUGUSTUS	start_codon	17581606	17581608	.	-	0	transcript_id "Ledus.S3G225000.t1"; gene_id "Ledus.S3G225000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4453.t1 is derived from g1889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17172023	17172626	.	-	.	Ledus.S1G187400
Ledus.S1	AUGUSTUS	transcript	17172023	17172626	.	-	.	transcript_id "Ledus.S1G187400.t1"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	stop_codon	17172020	17172022	.	-	0	transcript_id "Ledus.S1G187400.t1"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	CDS	17172023	17172242	0.64	-	1	transcript_id "Ledus.S1G187400.t1"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	exon	17172023	17172242	.	-	.	transcript_id "Ledus.S1G187400.t1"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	intron	17172243	17172432	.	-	.	transcript_id "Ledus.S1G187400.t1"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	CDS	17172433	17172626	0.59	-	0	transcript_id "Ledus.S1G187400.t1"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	exon	17172433	17172626	.	-	.	transcript_id "Ledus.S1G187400.t1"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	start_codon	17172624	17172626	.	-	0	transcript_id "Ledus.S1G187400.t1"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	transcript	17172023	17172626	.	-	.	transcript_id "Ledus.S1G187400.t2"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	stop_codon	17172020	17172022	.	-	0	transcript_id "Ledus.S1G187400.t2"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	CDS	17172023	17172104	0.49	-	1	transcript_id "Ledus.S1G187400.t2"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	exon	17172023	17172104	.	-	.	transcript_id "Ledus.S1G187400.t2"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	intron	17172105	17172432	.	-	.	transcript_id "Ledus.S1G187400.t2"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	CDS	17172433	17172626	0.38	-	0	transcript_id "Ledus.S1G187400.t2"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	exon	17172433	17172626	.	-	.	transcript_id "Ledus.S1G187400.t2"; gene_id "Ledus.S1G187400"
Ledus.S1	AUGUSTUS	start_codon	17172624	17172626	.	-	0	transcript_id "Ledus.S1G187400.t2"; gene_id "Ledus.S1G187400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11934.t1 is derived from g5553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7865314	7868701	.	+	.	Ledus.S4G109000
Ledus.S4	AUGUSTUS	transcript	7865314	7868701	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	start_codon	7865314	7865316	.	+	0	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7865314	7865340	0.93	+	0	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7865314	7865340	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7865341	7865513	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7865514	7865686	1	+	0	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7865514	7865686	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7865687	7865778	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7865779	7865860	1	+	1	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7865779	7865860	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7865861	7865953	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7865954	7866026	1	+	0	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7865954	7866026	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7866027	7866113	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7866114	7866211	1	+	2	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7866114	7866211	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7866212	7866321	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7866322	7866414	1	+	0	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7866322	7866414	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7866415	7866547	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7866548	7866621	1	+	0	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7866548	7866621	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7866622	7866712	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7866713	7866751	1	+	1	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7866713	7866751	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7866752	7866875	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7866876	7866964	1	+	1	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7866876	7866964	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7866965	7867096	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7867097	7867173	1	+	2	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7867097	7867173	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7867174	7867292	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7867293	7867367	1	+	0	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7867293	7867367	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7867368	7867462	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7867463	7867510	1	+	0	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7867463	7867510	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7867511	7867618	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7867619	7867702	1	+	0	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7867619	7867702	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7867703	7867817	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7867818	7867905	1	+	0	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7867818	7867905	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7867906	7867998	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7867999	7868077	1	+	2	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7867999	7868077	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7868078	7868189	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7868190	7868280	1	+	1	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7868190	7868280	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7868281	7868400	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7868401	7868479	1	+	0	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7868401	7868479	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	intron	7868480	7868558	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	CDS	7868559	7868701	0.67	+	2	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	exon	7868559	7868701	.	+	.	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
Ledus.S4	AUGUSTUS	stop_codon	7868702	7868704	.	+	0	transcript_id "Ledus.S4G109000.t1"; gene_id "Ledus.S4G109000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2820.t1 is derived from g254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3928254	3928811	.	+	.	Ledus.S1G024100
Ledus.S1	AUGUSTUS	transcript	3928254	3928811	.	+	.	transcript_id "Ledus.S1G024100.t1"; gene_id "Ledus.S1G024100"
Ledus.S1	AUGUSTUS	start_codon	3928254	3928256	.	+	0	transcript_id "Ledus.S1G024100.t1"; gene_id "Ledus.S1G024100"
Ledus.S1	AUGUSTUS	CDS	3928254	3928811	1	+	0	transcript_id "Ledus.S1G024100.t1"; gene_id "Ledus.S1G024100"
Ledus.S1	AUGUSTUS	exon	3928254	3928811	.	+	.	transcript_id "Ledus.S1G024100.t1"; gene_id "Ledus.S1G024100"
Ledus.S1	AUGUSTUS	stop_codon	3928812	3928814	.	+	0	transcript_id "Ledus.S1G024100.t1"; gene_id "Ledus.S1G024100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11290.t1 is derived from g4908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3404891	3406630	.	-	.	Ledus.S4G044600
Ledus.S4	AUGUSTUS	transcript	3404891	3406630	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	stop_codon	3404888	3404890	.	-	0	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	CDS	3404891	3405091	1	-	0	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	exon	3404891	3405091	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	intron	3405092	3405191	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	CDS	3405192	3405287	1	-	0	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	exon	3405192	3405287	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	intron	3405288	3405398	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	CDS	3405399	3405425	1	-	0	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	exon	3405399	3405425	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	intron	3405426	3405520	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	CDS	3405521	3405667	1	-	0	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	exon	3405521	3405667	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	intron	3405668	3405756	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	CDS	3405757	3405843	1	-	0	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	exon	3405757	3405843	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	intron	3405844	3405935	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	CDS	3405936	3406154	1	-	0	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	exon	3405936	3406154	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	intron	3406155	3406291	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	CDS	3406292	3406630	1	-	0	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	exon	3406292	3406630	.	-	.	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
Ledus.S4	AUGUSTUS	start_codon	3406628	3406630	.	-	0	transcript_id "Ledus.S4G044600.t1"; gene_id "Ledus.S4G044600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9054.t1 is derived from g10084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4231162	4231557	.	+	.	Ledus.S3G053100
Ledus.S3	AUGUSTUS	transcript	4231162	4231557	.	+	.	transcript_id "Ledus.S3G053100.t1"; gene_id "Ledus.S3G053100"
Ledus.S3	AUGUSTUS	start_codon	4231162	4231164	.	+	0	transcript_id "Ledus.S3G053100.t1"; gene_id "Ledus.S3G053100"
Ledus.S3	AUGUSTUS	CDS	4231162	4231557	0.9	+	0	transcript_id "Ledus.S3G053100.t1"; gene_id "Ledus.S3G053100"
Ledus.S3	AUGUSTUS	exon	4231162	4231557	.	+	.	transcript_id "Ledus.S3G053100.t1"; gene_id "Ledus.S3G053100"
Ledus.S3	AUGUSTUS	stop_codon	4231558	4231560	.	+	0	transcript_id "Ledus.S3G053100.t1"; gene_id "Ledus.S3G053100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3103.t1 is derived from g538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5864358	5865796	.	+	.	Ledus.S1G052400
Ledus.S1	AUGUSTUS	transcript	5864358	5865796	.	+	.	transcript_id "Ledus.S1G052400.t1"; gene_id "Ledus.S1G052400"
Ledus.S1	AUGUSTUS	start_codon	5864358	5864360	.	+	0	transcript_id "Ledus.S1G052400.t1"; gene_id "Ledus.S1G052400"
Ledus.S1	AUGUSTUS	CDS	5864358	5864918	0.4	+	0	transcript_id "Ledus.S1G052400.t1"; gene_id "Ledus.S1G052400"
Ledus.S1	AUGUSTUS	exon	5864358	5864918	.	+	.	transcript_id "Ledus.S1G052400.t1"; gene_id "Ledus.S1G052400"
Ledus.S1	AUGUSTUS	intron	5864919	5865169	.	+	.	transcript_id "Ledus.S1G052400.t1"; gene_id "Ledus.S1G052400"
Ledus.S1	AUGUSTUS	CDS	5865170	5865475	0.49	+	0	transcript_id "Ledus.S1G052400.t1"; gene_id "Ledus.S1G052400"
Ledus.S1	AUGUSTUS	exon	5865170	5865475	.	+	.	transcript_id "Ledus.S1G052400.t1"; gene_id "Ledus.S1G052400"
Ledus.S1	AUGUSTUS	intron	5865476	5865763	.	+	.	transcript_id "Ledus.S1G052400.t1"; gene_id "Ledus.S1G052400"
Ledus.S1	AUGUSTUS	CDS	5865764	5865796	0.72	+	0	transcript_id "Ledus.S1G052400.t1"; gene_id "Ledus.S1G052400"
Ledus.S1	AUGUSTUS	exon	5865764	5865796	.	+	.	transcript_id "Ledus.S1G052400.t1"; gene_id "Ledus.S1G052400"
Ledus.S1	AUGUSTUS	stop_codon	5865797	5865799	.	+	0	transcript_id "Ledus.S1G052400.t1"; gene_id "Ledus.S1G052400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9138.t1 is derived from g10168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4791529	4796050	.	-	.	Ledus.S3G061500
Ledus.S3	AUGUSTUS	transcript	4791529	4796050	.	-	.	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	stop_codon	4791526	4791528	.	-	0	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	CDS	4791529	4792443	0.99	-	0	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	exon	4791529	4792443	.	-	.	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	intron	4792444	4792562	.	-	.	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	CDS	4792563	4793058	1	-	1	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	exon	4792563	4793058	.	-	.	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	intron	4793059	4793138	.	-	.	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	CDS	4793139	4795036	1	-	0	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	exon	4793139	4795036	.	-	.	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	intron	4795037	4795109	.	-	.	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	CDS	4795110	4795276	0.99	-	2	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	exon	4795110	4795276	.	-	.	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	intron	4795277	4795379	.	-	.	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	CDS	4795380	4795434	0.99	-	0	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	exon	4795380	4795434	.	-	.	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	intron	4795435	4795546	.	-	.	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	CDS	4795547	4796050	0.51	-	0	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	exon	4795547	4796050	.	-	.	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
Ledus.S3	AUGUSTUS	start_codon	4796048	4796050	.	-	0	transcript_id "Ledus.S3G061500.t1"; gene_id "Ledus.S3G061500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4875.t1 is derived from g2313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20489014	20493213	.	-	.	Ledus.S1G229600
Ledus.S1	AUGUSTUS	transcript	20489014	20493213	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	stop_codon	20489011	20489013	.	-	0	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	CDS	20489014	20489156	0.63	-	2	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	exon	20489014	20489156	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	intron	20489157	20489269	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	CDS	20489270	20489353	0.95	-	2	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	exon	20489270	20489353	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	intron	20489354	20489478	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	CDS	20489479	20491264	1	-	0	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	exon	20489479	20491264	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	intron	20491265	20491416	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	CDS	20491417	20491502	1	-	2	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	exon	20491417	20491502	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	intron	20491503	20491745	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	CDS	20491746	20491898	0.37	-	2	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	exon	20491746	20491898	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	intron	20491899	20492291	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	CDS	20492292	20492400	0.82	-	0	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	exon	20492292	20492400	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	intron	20492401	20493144	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	CDS	20493145	20493213	1	-	0	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	exon	20493145	20493213	.	-	.	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
Ledus.S1	AUGUSTUS	start_codon	20493211	20493213	.	-	0	transcript_id "Ledus.S1G229600.t1"; gene_id "Ledus.S1G229600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2399.t1 is derived from g9262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17888977	17891948	.	+	.	Ledus.S2G228100
Ledus.S2	AUGUSTUS	transcript	17888977	17891948	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	start_codon	17888977	17888979	.	+	0	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17888977	17889381	0.43	+	0	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17888977	17889381	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17889382	17889668	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17889669	17889785	0.44	+	0	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17889669	17889785	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17889786	17889871	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17889872	17889923	1	+	0	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17889872	17889923	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17889924	17890010	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17890011	17890066	1	+	2	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17890011	17890066	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17890067	17890151	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17890152	17890252	1	+	0	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17890152	17890252	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17890253	17890322	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17890323	17890392	1	+	1	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17890323	17890392	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17890393	17890482	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17890483	17890552	1	+	0	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17890483	17890552	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17890553	17890640	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17890641	17890697	0.98	+	2	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17890641	17890697	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17890698	17890819	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17890820	17890887	0.98	+	2	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17890820	17890887	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17890888	17890996	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17890997	17891077	1	+	0	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17890997	17891077	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17891078	17891235	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17891236	17891313	1	+	0	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17891236	17891313	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17891314	17891389	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17891390	17891545	1	+	0	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17891390	17891545	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17891546	17891633	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17891634	17891786	1	+	0	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17891634	17891786	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	intron	17891787	17891876	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	CDS	17891877	17891948	1	+	0	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	exon	17891877	17891948	.	+	.	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
Ledus.S2	AUGUSTUS	stop_codon	17891949	17891951	.	+	0	transcript_id "Ledus.S2G228100.t1"; gene_id "Ledus.S2G228100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4934.t1 is derived from g2372.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20752239	20755988	.	+	.	Ledus.S1G235500
Ledus.S1	AUGUSTUS	transcript	20752239	20755988	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	start_codon	20752239	20752241	.	+	0	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20752239	20752607	0.32	+	0	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20752239	20752607	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20752608	20752723	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20752724	20753740	0.79	+	0	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20752724	20753740	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20753741	20754113	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20754114	20754230	1	+	0	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20754114	20754230	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20754231	20754306	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20754307	20754428	1	+	0	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20754307	20754428	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20754429	20754532	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20754533	20754758	1	+	1	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20754533	20754758	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20754759	20754862	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20754863	20754932	1	+	0	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20754863	20754932	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20754933	20754994	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20754995	20755024	0.99	+	2	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20754995	20755024	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20755025	20755114	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20755115	20755649	0.95	+	2	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20755115	20755649	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20755650	20755742	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20755743	20755831	1	+	1	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20755743	20755831	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20755832	20755980	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20755981	20755988	0.69	+	2	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20755981	20755988	.	+	.	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	stop_codon	20755989	20755991	.	+	0	transcript_id "Ledus.S1G235500.t1"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	transcript	20752239	20755988	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	start_codon	20752239	20752241	.	+	0	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20752239	20752607	0.41	+	0	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20752239	20752607	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20752608	20752723	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20752724	20753740	0.75	+	0	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20752724	20753740	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20753741	20754113	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20754114	20754230	1	+	0	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20754114	20754230	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20754231	20754306	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20754307	20754428	1	+	0	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20754307	20754428	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20754429	20754532	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20754533	20754758	1	+	1	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20754533	20754758	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20754759	20754862	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20754863	20754971	1	+	0	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20754863	20754971	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20754972	20755114	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20755115	20755649	0.9	+	2	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20755115	20755649	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20755650	20755742	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20755743	20755831	1	+	1	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20755743	20755831	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	intron	20755832	20755980	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	CDS	20755981	20755988	0.74	+	2	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	exon	20755981	20755988	.	+	.	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
Ledus.S1	AUGUSTUS	stop_codon	20755989	20755991	.	+	0	transcript_id "Ledus.S1G235500.t2"; gene_id "Ledus.S1G235500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11614.t1 is derived from g5232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5526983	5531790	.	-	.	Ledus.S4G077000
Ledus.S4	AUGUSTUS	transcript	5526983	5531790	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	stop_codon	5526980	5526982	.	-	0	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5526983	5527590	0.94	-	2	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5526983	5527590	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5527591	5527678	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5527679	5527728	1	-	1	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5527679	5527728	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5527729	5527854	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5527855	5528050	1	-	2	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5527855	5528050	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5528051	5528127	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5528128	5528171	1	-	1	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5528128	5528171	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5528172	5528294	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5528295	5528328	1	-	2	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5528295	5528328	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5528329	5528523	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5528524	5528576	0.99	-	1	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5528524	5528576	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5528577	5528690	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5528691	5528838	0.92	-	2	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5528691	5528838	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5528839	5528921	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5528922	5528956	0.98	-	1	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5528922	5528956	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5528957	5529106	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5529107	5529249	0.98	-	0	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5529107	5529249	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5529250	5529361	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5529362	5529943	0.82	-	0	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5529362	5529943	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5529944	5530173	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5530174	5530236	0.54	-	0	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5530174	5530236	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5530237	5530509	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5530510	5530572	0.68	-	0	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5530510	5530572	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5530573	5530729	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5530730	5530865	0.73	-	1	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5530730	5530865	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5530866	5530953	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5530954	5530978	1	-	2	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5530954	5530978	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5530979	5531079	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5531080	5531127	0.95	-	2	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5531080	5531127	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5531128	5531311	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5531312	5531499	1	-	1	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5531312	5531499	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5531500	5531580	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5531581	5531603	1	-	0	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5531581	5531603	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5531604	5531748	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5531749	5531790	0.77	-	0	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5531749	5531790	.	-	.	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	start_codon	5531788	5531790	.	-	0	transcript_id "Ledus.S4G077000.t1"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	transcript	5526983	5531790	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	stop_codon	5526980	5526982	.	-	0	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5526983	5527590	0.95	-	2	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5526983	5527590	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5527591	5527678	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5527679	5527728	1	-	1	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5527679	5527728	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5527729	5527854	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5527855	5528050	1	-	2	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5527855	5528050	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5528051	5528127	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5528128	5528171	0.98	-	1	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5528128	5528171	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5528172	5528294	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5528295	5528328	0.98	-	2	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5528295	5528328	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5528329	5528523	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5528524	5528576	0.97	-	1	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5528524	5528576	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5528577	5528690	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5528691	5528838	0.89	-	2	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5528691	5528838	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5528839	5528921	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5528922	5528956	0.98	-	1	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5528922	5528956	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5528957	5529106	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5529107	5529249	0.98	-	0	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5529107	5529249	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5529250	5529361	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5529362	5529943	0.81	-	0	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5529362	5529943	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5529944	5530173	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5530174	5530236	0.48	-	0	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5530174	5530236	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5530237	5530509	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5530510	5530572	0.62	-	0	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5530510	5530572	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5530573	5530729	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5530730	5530865	0.69	-	1	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5530730	5530865	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5530866	5530953	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5530954	5530978	0.99	-	2	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5530954	5530978	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5530979	5531079	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5531080	5531199	0.6	-	2	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5531080	5531199	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5531200	5531311	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5531312	5531499	0.9	-	1	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5531312	5531499	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5531500	5531580	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5531581	5531603	1	-	0	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5531581	5531603	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	intron	5531604	5531748	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	CDS	5531749	5531790	0.8	-	0	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	exon	5531749	5531790	.	-	.	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
Ledus.S4	AUGUSTUS	start_codon	5531788	5531790	.	-	0	transcript_id "Ledus.S4G077000.t2"; gene_id "Ledus.S4G077000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1607.t1 is derived from g8468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11333934	11334374	.	-	.	Ledus.S2G148900
Ledus.S2	AUGUSTUS	transcript	11333934	11334374	.	-	.	transcript_id "Ledus.S2G148900.t1"; gene_id "Ledus.S2G148900"
Ledus.S2	AUGUSTUS	stop_codon	11333931	11333933	.	-	0	transcript_id "Ledus.S2G148900.t1"; gene_id "Ledus.S2G148900"
Ledus.S2	AUGUSTUS	CDS	11333934	11334374	1	-	0	transcript_id "Ledus.S2G148900.t1"; gene_id "Ledus.S2G148900"
Ledus.S2	AUGUSTUS	exon	11333934	11334374	.	-	.	transcript_id "Ledus.S2G148900.t1"; gene_id "Ledus.S2G148900"
Ledus.S2	AUGUSTUS	start_codon	11334372	11334374	.	-	0	transcript_id "Ledus.S2G148900.t1"; gene_id "Ledus.S2G148900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10858.t1 is derived from g4476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	148264	148965	.	-	.	Ledus.S4G001400
Ledus.S4	AUGUSTUS	transcript	148264	148965	.	-	.	transcript_id "Ledus.S4G001400.t1"; gene_id "Ledus.S4G001400"
Ledus.S4	AUGUSTUS	stop_codon	148261	148263	.	-	0	transcript_id "Ledus.S4G001400.t1"; gene_id "Ledus.S4G001400"
Ledus.S4	AUGUSTUS	CDS	148264	148560	1	-	0	transcript_id "Ledus.S4G001400.t1"; gene_id "Ledus.S4G001400"
Ledus.S4	AUGUSTUS	exon	148264	148560	.	-	.	transcript_id "Ledus.S4G001400.t1"; gene_id "Ledus.S4G001400"
Ledus.S4	AUGUSTUS	intron	148561	148839	.	-	.	transcript_id "Ledus.S4G001400.t1"; gene_id "Ledus.S4G001400"
Ledus.S4	AUGUSTUS	CDS	148840	148965	1	-	0	transcript_id "Ledus.S4G001400.t1"; gene_id "Ledus.S4G001400"
Ledus.S4	AUGUSTUS	exon	148840	148965	.	-	.	transcript_id "Ledus.S4G001400.t1"; gene_id "Ledus.S4G001400"
Ledus.S4	AUGUSTUS	start_codon	148963	148965	.	-	0	transcript_id "Ledus.S4G001400.t1"; gene_id "Ledus.S4G001400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13056.t1 is derived from g6866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4267445	4268100	.	+	.	Ledus.S6G011800
Ledus.S6	AUGUSTUS	transcript	4267445	4268100	.	+	.	transcript_id "Ledus.S6G011800.t1"; gene_id "Ledus.S6G011800"
Ledus.S6	AUGUSTUS	start_codon	4267445	4267447	.	+	0	transcript_id "Ledus.S6G011800.t1"; gene_id "Ledus.S6G011800"
Ledus.S6	AUGUSTUS	CDS	4267445	4267471	0.41	+	0	transcript_id "Ledus.S6G011800.t1"; gene_id "Ledus.S6G011800"
Ledus.S6	AUGUSTUS	exon	4267445	4267471	.	+	.	transcript_id "Ledus.S6G011800.t1"; gene_id "Ledus.S6G011800"
Ledus.S6	AUGUSTUS	intron	4267472	4267605	.	+	.	transcript_id "Ledus.S6G011800.t1"; gene_id "Ledus.S6G011800"
Ledus.S6	AUGUSTUS	CDS	4267606	4268100	0.4	+	0	transcript_id "Ledus.S6G011800.t1"; gene_id "Ledus.S6G011800"
Ledus.S6	AUGUSTUS	exon	4267606	4268100	.	+	.	transcript_id "Ledus.S6G011800.t1"; gene_id "Ledus.S6G011800"
Ledus.S6	AUGUSTUS	stop_codon	4268101	4268103	.	+	0	transcript_id "Ledus.S6G011800.t1"; gene_id "Ledus.S6G011800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4284.t1 is derived from g1720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16050272	16050760	.	+	.	Ledus.S1G170500
Ledus.S1	AUGUSTUS	transcript	16050272	16050760	.	+	.	transcript_id "Ledus.S1G170500.t1"; gene_id "Ledus.S1G170500"
Ledus.S1	AUGUSTUS	start_codon	16050272	16050274	.	+	0	transcript_id "Ledus.S1G170500.t1"; gene_id "Ledus.S1G170500"
Ledus.S1	AUGUSTUS	CDS	16050272	16050760	0.58	+	0	transcript_id "Ledus.S1G170500.t1"; gene_id "Ledus.S1G170500"
Ledus.S1	AUGUSTUS	exon	16050272	16050760	.	+	.	transcript_id "Ledus.S1G170500.t1"; gene_id "Ledus.S1G170500"
Ledus.S1	AUGUSTUS	stop_codon	16050761	16050763	.	+	0	transcript_id "Ledus.S1G170500.t1"; gene_id "Ledus.S1G170500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3237.t1 is derived from g672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7059274	7060419	.	+	.	Ledus.S1G065800
Ledus.S1	AUGUSTUS	transcript	7059274	7060419	.	+	.	transcript_id "Ledus.S1G065800.t1"; gene_id "Ledus.S1G065800"
Ledus.S1	AUGUSTUS	start_codon	7059274	7059276	.	+	0	transcript_id "Ledus.S1G065800.t1"; gene_id "Ledus.S1G065800"
Ledus.S1	AUGUSTUS	CDS	7059274	7060419	1	+	0	transcript_id "Ledus.S1G065800.t1"; gene_id "Ledus.S1G065800"
Ledus.S1	AUGUSTUS	exon	7059274	7060419	.	+	.	transcript_id "Ledus.S1G065800.t1"; gene_id "Ledus.S1G065800"
Ledus.S1	AUGUSTUS	stop_codon	7060420	7060422	.	+	0	transcript_id "Ledus.S1G065800.t1"; gene_id "Ledus.S1G065800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg526.t1 is derived from g7387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3050823	3051452	.	-	.	Ledus.S2G040800
Ledus.S2	AUGUSTUS	transcript	3050823	3051452	.	-	.	transcript_id "Ledus.S2G040800.t1"; gene_id "Ledus.S2G040800"
Ledus.S2	AUGUSTUS	stop_codon	3050820	3050822	.	-	0	transcript_id "Ledus.S2G040800.t1"; gene_id "Ledus.S2G040800"
Ledus.S2	AUGUSTUS	CDS	3050823	3050948	0.75	-	0	transcript_id "Ledus.S2G040800.t1"; gene_id "Ledus.S2G040800"
Ledus.S2	AUGUSTUS	exon	3050823	3050948	.	-	.	transcript_id "Ledus.S2G040800.t1"; gene_id "Ledus.S2G040800"
Ledus.S2	AUGUSTUS	intron	3050949	3051029	.	-	.	transcript_id "Ledus.S2G040800.t1"; gene_id "Ledus.S2G040800"
Ledus.S2	AUGUSTUS	CDS	3051030	3051134	1	-	0	transcript_id "Ledus.S2G040800.t1"; gene_id "Ledus.S2G040800"
Ledus.S2	AUGUSTUS	exon	3051030	3051134	.	-	.	transcript_id "Ledus.S2G040800.t1"; gene_id "Ledus.S2G040800"
Ledus.S2	AUGUSTUS	intron	3051135	3051236	.	-	.	transcript_id "Ledus.S2G040800.t1"; gene_id "Ledus.S2G040800"
Ledus.S2	AUGUSTUS	CDS	3051237	3051452	0.66	-	0	transcript_id "Ledus.S2G040800.t1"; gene_id "Ledus.S2G040800"
Ledus.S2	AUGUSTUS	exon	3051237	3051452	.	-	.	transcript_id "Ledus.S2G040800.t1"; gene_id "Ledus.S2G040800"
Ledus.S2	AUGUSTUS	start_codon	3051450	3051452	.	-	0	transcript_id "Ledus.S2G040800.t1"; gene_id "Ledus.S2G040800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10148.t1 is derived from g11178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13188704	13190139	.	+	.	Ledus.S3G162500
Ledus.S3	AUGUSTUS	transcript	13188704	13190139	.	+	.	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	start_codon	13188704	13188706	.	+	0	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	CDS	13188704	13189003	0.41	+	0	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	exon	13188704	13189003	.	+	.	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	intron	13189004	13189074	.	+	.	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	CDS	13189075	13189232	0.62	+	0	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	exon	13189075	13189232	.	+	.	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	intron	13189233	13189448	.	+	.	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	CDS	13189449	13189503	0.92	+	1	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	exon	13189449	13189503	.	+	.	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	intron	13189504	13189664	.	+	.	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	CDS	13189665	13189737	0.93	+	0	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	exon	13189665	13189737	.	+	.	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	intron	13189738	13189912	.	+	.	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	CDS	13189913	13190139	0.73	+	2	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	exon	13189913	13190139	.	+	.	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
Ledus.S3	AUGUSTUS	stop_codon	13190140	13190142	.	+	0	transcript_id "Ledus.S3G162500.t1"; gene_id "Ledus.S3G162500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12887.t1 is derived from g4460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	358027	359042	.	+	.	Ledus.C10G003000
Ledus.C10	AUGUSTUS	transcript	358027	359042	.	+	.	transcript_id "Ledus.C10G003000.t1"; gene_id "Ledus.C10G003000"
Ledus.C10	AUGUSTUS	start_codon	358027	358029	.	+	0	transcript_id "Ledus.C10G003000.t1"; gene_id "Ledus.C10G003000"
Ledus.C10	AUGUSTUS	CDS	358027	358273	1	+	0	transcript_id "Ledus.C10G003000.t1"; gene_id "Ledus.C10G003000"
Ledus.C10	AUGUSTUS	exon	358027	358273	.	+	.	transcript_id "Ledus.C10G003000.t1"; gene_id "Ledus.C10G003000"
Ledus.C10	AUGUSTUS	intron	358274	358348	.	+	.	transcript_id "Ledus.C10G003000.t1"; gene_id "Ledus.C10G003000"
Ledus.C10	AUGUSTUS	CDS	358349	358701	1	+	2	transcript_id "Ledus.C10G003000.t1"; gene_id "Ledus.C10G003000"
Ledus.C10	AUGUSTUS	exon	358349	358701	.	+	.	transcript_id "Ledus.C10G003000.t1"; gene_id "Ledus.C10G003000"
Ledus.C10	AUGUSTUS	intron	358702	358787	.	+	.	transcript_id "Ledus.C10G003000.t1"; gene_id "Ledus.C10G003000"
Ledus.C10	AUGUSTUS	CDS	358788	359042	0.98	+	0	transcript_id "Ledus.C10G003000.t1"; gene_id "Ledus.C10G003000"
Ledus.C10	AUGUSTUS	exon	358788	359042	.	+	.	transcript_id "Ledus.C10G003000.t1"; gene_id "Ledus.C10G003000"
Ledus.C10	AUGUSTUS	stop_codon	359043	359045	.	+	0	transcript_id "Ledus.C10G003000.t1"; gene_id "Ledus.C10G003000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1835.t1 is derived from g8698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12887744	12888736	.	+	.	Ledus.S2G171700
Ledus.S2	AUGUSTUS	transcript	12887744	12888736	.	+	.	transcript_id "Ledus.S2G171700.t1"; gene_id "Ledus.S2G171700"
Ledus.S2	AUGUSTUS	start_codon	12887744	12887746	.	+	0	transcript_id "Ledus.S2G171700.t1"; gene_id "Ledus.S2G171700"
Ledus.S2	AUGUSTUS	CDS	12887744	12888736	1	+	0	transcript_id "Ledus.S2G171700.t1"; gene_id "Ledus.S2G171700"
Ledus.S2	AUGUSTUS	exon	12887744	12888736	.	+	.	transcript_id "Ledus.S2G171700.t1"; gene_id "Ledus.S2G171700"
Ledus.S2	AUGUSTUS	stop_codon	12888737	12888739	.	+	0	transcript_id "Ledus.S2G171700.t1"; gene_id "Ledus.S2G171700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4326.t1 is derived from g1762.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16335842	16337598	.	-	.	Ledus.S1G174700
Ledus.S1	AUGUSTUS	transcript	16335842	16337598	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	stop_codon	16335839	16335841	.	-	0	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16335842	16335940	0.99	-	0	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16335842	16335940	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	intron	16335941	16336058	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16336059	16336165	0.99	-	2	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16336059	16336165	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	intron	16336166	16336268	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16336269	16336316	1	-	2	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16336269	16336316	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	intron	16336317	16336410	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16336411	16336528	1	-	0	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16336411	16336528	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	intron	16336529	16336627	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16336628	16336823	1	-	1	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16336628	16336823	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	intron	16336824	16336912	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16336913	16337034	1	-	0	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16336913	16337034	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	intron	16337035	16337121	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16337122	16337598	0.63	-	0	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16337122	16337598	.	-	.	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	start_codon	16337596	16337598	.	-	0	transcript_id "Ledus.S1G174700.t1"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	transcript	16335842	16337598	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	stop_codon	16335839	16335841	.	-	0	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16335842	16335940	0.96	-	0	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16335842	16335940	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	intron	16335941	16336058	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16336059	16336165	1	-	2	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16336059	16336165	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	intron	16336166	16336268	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16336269	16336316	1	-	2	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16336269	16336316	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	intron	16336317	16336410	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16336411	16336528	1	-	0	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16336411	16336528	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	intron	16336529	16336627	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16336628	16336823	1	-	1	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16336628	16336823	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	intron	16336824	16336912	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16336913	16337034	1	-	0	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16336913	16337034	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	intron	16337035	16337127	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	CDS	16337128	16337598	0.42	-	0	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	exon	16337128	16337598	.	-	.	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
Ledus.S1	AUGUSTUS	start_codon	16337596	16337598	.	-	0	transcript_id "Ledus.S1G174700.t2"; gene_id "Ledus.S1G174700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11898.t1 is derived from g5517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7586228	7586738	.	-	.	Ledus.S4G105400
Ledus.S4	AUGUSTUS	transcript	7586228	7586738	.	-	.	transcript_id "Ledus.S4G105400.t1"; gene_id "Ledus.S4G105400"
Ledus.S4	AUGUSTUS	stop_codon	7586225	7586227	.	-	0	transcript_id "Ledus.S4G105400.t1"; gene_id "Ledus.S4G105400"
Ledus.S4	AUGUSTUS	CDS	7586228	7586386	0.56	-	0	transcript_id "Ledus.S4G105400.t1"; gene_id "Ledus.S4G105400"
Ledus.S4	AUGUSTUS	exon	7586228	7586386	.	-	.	transcript_id "Ledus.S4G105400.t1"; gene_id "Ledus.S4G105400"
Ledus.S4	AUGUSTUS	intron	7586387	7586519	.	-	.	transcript_id "Ledus.S4G105400.t1"; gene_id "Ledus.S4G105400"
Ledus.S4	AUGUSTUS	CDS	7586520	7586738	0.58	-	0	transcript_id "Ledus.S4G105400.t1"; gene_id "Ledus.S4G105400"
Ledus.S4	AUGUSTUS	exon	7586520	7586738	.	-	.	transcript_id "Ledus.S4G105400.t1"; gene_id "Ledus.S4G105400"
Ledus.S4	AUGUSTUS	start_codon	7586736	7586738	.	-	0	transcript_id "Ledus.S4G105400.t1"; gene_id "Ledus.S4G105400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg628.t1 is derived from g7489.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3779771	3781443	.	+	.	Ledus.S2G051000
Ledus.S2	AUGUSTUS	transcript	3779771	3781443	.	+	.	transcript_id "Ledus.S2G051000.t1"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	start_codon	3779771	3779773	.	+	0	transcript_id "Ledus.S2G051000.t1"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	CDS	3779771	3780925	0.44	+	0	transcript_id "Ledus.S2G051000.t1"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	exon	3779771	3780925	.	+	.	transcript_id "Ledus.S2G051000.t1"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	intron	3780926	3781015	.	+	.	transcript_id "Ledus.S2G051000.t1"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	CDS	3781016	3781212	1	+	0	transcript_id "Ledus.S2G051000.t1"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	exon	3781016	3781212	.	+	.	transcript_id "Ledus.S2G051000.t1"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	intron	3781213	3781307	.	+	.	transcript_id "Ledus.S2G051000.t1"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	CDS	3781308	3781443	0.52	+	1	transcript_id "Ledus.S2G051000.t1"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	exon	3781308	3781443	.	+	.	transcript_id "Ledus.S2G051000.t1"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	stop_codon	3781444	3781446	.	+	0	transcript_id "Ledus.S2G051000.t1"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	transcript	3779771	3781443	.	+	.	transcript_id "Ledus.S2G051000.t2"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	start_codon	3779771	3779773	.	+	0	transcript_id "Ledus.S2G051000.t2"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	CDS	3779771	3780925	0.44	+	0	transcript_id "Ledus.S2G051000.t2"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	exon	3779771	3780925	.	+	.	transcript_id "Ledus.S2G051000.t2"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	intron	3780926	3781015	.	+	.	transcript_id "Ledus.S2G051000.t2"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	CDS	3781016	3781149	0.59	+	0	transcript_id "Ledus.S2G051000.t2"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	exon	3781016	3781149	.	+	.	transcript_id "Ledus.S2G051000.t2"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	intron	3781150	3781307	.	+	.	transcript_id "Ledus.S2G051000.t2"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	CDS	3781308	3781443	0.45	+	1	transcript_id "Ledus.S2G051000.t2"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	exon	3781308	3781443	.	+	.	transcript_id "Ledus.S2G051000.t2"; gene_id "Ledus.S2G051000"
Ledus.S2	AUGUSTUS	stop_codon	3781444	3781446	.	+	0	transcript_id "Ledus.S2G051000.t2"; gene_id "Ledus.S2G051000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4965.t1 is derived from g2403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20903025	20904722	.	+	.	Ledus.S1G238600
Ledus.S1	AUGUSTUS	transcript	20903025	20904722	.	+	.	transcript_id "Ledus.S1G238600.t1"; gene_id "Ledus.S1G238600"
Ledus.S1	AUGUSTUS	start_codon	20903025	20903027	.	+	0	transcript_id "Ledus.S1G238600.t1"; gene_id "Ledus.S1G238600"
Ledus.S1	AUGUSTUS	CDS	20903025	20903146	0.93	+	0	transcript_id "Ledus.S1G238600.t1"; gene_id "Ledus.S1G238600"
Ledus.S1	AUGUSTUS	exon	20903025	20903146	.	+	.	transcript_id "Ledus.S1G238600.t1"; gene_id "Ledus.S1G238600"
Ledus.S1	AUGUSTUS	intron	20903147	20903331	.	+	.	transcript_id "Ledus.S1G238600.t1"; gene_id "Ledus.S1G238600"
Ledus.S1	AUGUSTUS	CDS	20903332	20903701	0.21	+	1	transcript_id "Ledus.S1G238600.t1"; gene_id "Ledus.S1G238600"
Ledus.S1	AUGUSTUS	exon	20903332	20903701	.	+	.	transcript_id "Ledus.S1G238600.t1"; gene_id "Ledus.S1G238600"
Ledus.S1	AUGUSTUS	intron	20903702	20903825	.	+	.	transcript_id "Ledus.S1G238600.t1"; gene_id "Ledus.S1G238600"
Ledus.S1	AUGUSTUS	CDS	20903826	20904722	0.82	+	0	transcript_id "Ledus.S1G238600.t1"; gene_id "Ledus.S1G238600"
Ledus.S1	AUGUSTUS	exon	20903826	20904722	.	+	.	transcript_id "Ledus.S1G238600.t1"; gene_id "Ledus.S1G238600"
Ledus.S1	AUGUSTUS	stop_codon	20904723	20904725	.	+	0	transcript_id "Ledus.S1G238600.t1"; gene_id "Ledus.S1G238600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8856.t1 is derived from g9886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2323863	2324691	.	-	.	Ledus.S3G033300
Ledus.S3	AUGUSTUS	transcript	2323863	2324691	.	-	.	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	stop_codon	2323860	2323862	.	-	0	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	CDS	2323863	2323964	1	-	0	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	exon	2323863	2323964	.	-	.	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	intron	2323965	2324056	.	-	.	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	CDS	2324057	2324113	1	-	0	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	exon	2324057	2324113	.	-	.	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	intron	2324114	2324200	.	-	.	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	CDS	2324201	2324263	1	-	0	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	exon	2324201	2324263	.	-	.	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	intron	2324264	2324353	.	-	.	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	CDS	2324354	2324421	1	-	2	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	exon	2324354	2324421	.	-	.	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	intron	2324422	2324503	.	-	.	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	CDS	2324504	2324597	1	-	0	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	exon	2324504	2324597	.	-	.	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	intron	2324598	2324676	.	-	.	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	CDS	2324677	2324691	1	-	0	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	exon	2324677	2324691	.	-	.	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
Ledus.S3	AUGUSTUS	start_codon	2324689	2324691	.	-	0	transcript_id "Ledus.S3G033300.t1"; gene_id "Ledus.S3G033300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4112.t1 is derived from g1548.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14762320	14764223	.	-	.	Ledus.S1G153300
Ledus.S1	AUGUSTUS	transcript	14762320	14764223	.	-	.	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	stop_codon	14762317	14762319	.	-	0	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	CDS	14762320	14762638	1	-	1	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	exon	14762320	14762638	.	-	.	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	intron	14762639	14762730	.	-	.	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	CDS	14762731	14762889	1	-	1	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	exon	14762731	14762889	.	-	.	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	intron	14762890	14763001	.	-	.	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	CDS	14763002	14763391	0.65	-	1	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	exon	14763002	14763391	.	-	.	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	intron	14763392	14763507	.	-	.	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	CDS	14763508	14763858	0.36	-	1	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	exon	14763508	14763858	.	-	.	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	intron	14763859	14763964	.	-	.	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	CDS	14763965	14764008	0.62	-	0	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	exon	14763965	14764008	.	-	.	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	intron	14764009	14764166	.	-	.	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	CDS	14764167	14764223	0.53	-	0	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	exon	14764167	14764223	.	-	.	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
Ledus.S1	AUGUSTUS	start_codon	14764221	14764223	.	-	0	transcript_id "Ledus.S1G153300.t1"; gene_id "Ledus.S1G153300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5643.t1 is derived from g3082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25552604	25555439	.	+	.	Ledus.S1G306400
Ledus.S1	AUGUSTUS	transcript	25552604	25555439	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	start_codon	25552604	25552606	.	+	0	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	CDS	25552604	25552774	0.53	+	0	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	exon	25552604	25552774	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	intron	25552775	25552825	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	CDS	25552826	25552933	0.63	+	0	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	exon	25552826	25552933	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	intron	25552934	25553091	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	CDS	25553092	25553191	1	+	0	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	exon	25553092	25553191	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	intron	25553192	25553277	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	CDS	25553278	25553418	1	+	2	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	exon	25553278	25553418	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	intron	25553419	25553521	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	CDS	25553522	25553580	0.93	+	2	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	exon	25553522	25553580	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	intron	25553581	25553692	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	CDS	25553693	25553760	1	+	0	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	exon	25553693	25553760	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	intron	25553761	25553858	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	CDS	25553859	25553910	0.54	+	1	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	exon	25553859	25553910	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	intron	25553911	25554019	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	CDS	25554020	25554229	0.92	+	0	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	exon	25554020	25554229	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	intron	25554230	25554330	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	CDS	25554331	25554936	0.99	+	0	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	exon	25554331	25554936	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	intron	25554937	25555030	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	CDS	25555031	25555101	0.79	+	0	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	exon	25555031	25555101	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	intron	25555102	25555235	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	CDS	25555236	25555271	0.8	+	1	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	exon	25555236	25555271	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	intron	25555272	25555414	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	CDS	25555415	25555439	0.84	+	1	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	exon	25555415	25555439	.	+	.	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
Ledus.S1	AUGUSTUS	stop_codon	25555440	25555442	.	+	0	transcript_id "Ledus.S1G306400.t1"; gene_id "Ledus.S1G306400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1392.t1 is derived from g8253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9744191	9745224	.	-	.	Ledus.S2G127400
Ledus.S2	AUGUSTUS	transcript	9744191	9745224	.	-	.	transcript_id "Ledus.S2G127400.t1"; gene_id "Ledus.S2G127400"
Ledus.S2	AUGUSTUS	stop_codon	9744188	9744190	.	-	0	transcript_id "Ledus.S2G127400.t1"; gene_id "Ledus.S2G127400"
Ledus.S2	AUGUSTUS	CDS	9744191	9744535	0.98	-	0	transcript_id "Ledus.S2G127400.t1"; gene_id "Ledus.S2G127400"
Ledus.S2	AUGUSTUS	exon	9744191	9744535	.	-	.	transcript_id "Ledus.S2G127400.t1"; gene_id "Ledus.S2G127400"
Ledus.S2	AUGUSTUS	intron	9744536	9744619	.	-	.	transcript_id "Ledus.S2G127400.t1"; gene_id "Ledus.S2G127400"
Ledus.S2	AUGUSTUS	CDS	9744620	9744826	1	-	0	transcript_id "Ledus.S2G127400.t1"; gene_id "Ledus.S2G127400"
Ledus.S2	AUGUSTUS	exon	9744620	9744826	.	-	.	transcript_id "Ledus.S2G127400.t1"; gene_id "Ledus.S2G127400"
Ledus.S2	AUGUSTUS	intron	9744827	9744945	.	-	.	transcript_id "Ledus.S2G127400.t1"; gene_id "Ledus.S2G127400"
Ledus.S2	AUGUSTUS	CDS	9744946	9745224	0.68	-	0	transcript_id "Ledus.S2G127400.t1"; gene_id "Ledus.S2G127400"
Ledus.S2	AUGUSTUS	exon	9744946	9745224	.	-	.	transcript_id "Ledus.S2G127400.t1"; gene_id "Ledus.S2G127400"
Ledus.S2	AUGUSTUS	start_codon	9745222	9745224	.	-	0	transcript_id "Ledus.S2G127400.t1"; gene_id "Ledus.S2G127400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10861.t1 is derived from g4479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	152725	153337	.	+	.	Ledus.S4G001700
Ledus.S4	AUGUSTUS	transcript	152725	153337	.	+	.	transcript_id "Ledus.S4G001700.t1"; gene_id "Ledus.S4G001700"
Ledus.S4	AUGUSTUS	start_codon	152725	152727	.	+	0	transcript_id "Ledus.S4G001700.t1"; gene_id "Ledus.S4G001700"
Ledus.S4	AUGUSTUS	CDS	152725	152797	0.98	+	0	transcript_id "Ledus.S4G001700.t1"; gene_id "Ledus.S4G001700"
Ledus.S4	AUGUSTUS	exon	152725	152797	.	+	.	transcript_id "Ledus.S4G001700.t1"; gene_id "Ledus.S4G001700"
Ledus.S4	AUGUSTUS	intron	152798	152874	.	+	.	transcript_id "Ledus.S4G001700.t1"; gene_id "Ledus.S4G001700"
Ledus.S4	AUGUSTUS	CDS	152875	152996	1	+	2	transcript_id "Ledus.S4G001700.t1"; gene_id "Ledus.S4G001700"
Ledus.S4	AUGUSTUS	exon	152875	152996	.	+	.	transcript_id "Ledus.S4G001700.t1"; gene_id "Ledus.S4G001700"
Ledus.S4	AUGUSTUS	intron	152997	153091	.	+	.	transcript_id "Ledus.S4G001700.t1"; gene_id "Ledus.S4G001700"
Ledus.S4	AUGUSTUS	CDS	153092	153337	1	+	0	transcript_id "Ledus.S4G001700.t1"; gene_id "Ledus.S4G001700"
Ledus.S4	AUGUSTUS	exon	153092	153337	.	+	.	transcript_id "Ledus.S4G001700.t1"; gene_id "Ledus.S4G001700"
Ledus.S4	AUGUSTUS	stop_codon	153338	153340	.	+	0	transcript_id "Ledus.S4G001700.t1"; gene_id "Ledus.S4G001700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1003.t1 is derived from g7864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6564179	6567462	.	+	.	Ledus.S2G088500
Ledus.S2	AUGUSTUS	transcript	6564179	6567462	.	+	.	transcript_id "Ledus.S2G088500.t1"; gene_id "Ledus.S2G088500"
Ledus.S2	AUGUSTUS	start_codon	6564179	6564181	.	+	0	transcript_id "Ledus.S2G088500.t1"; gene_id "Ledus.S2G088500"
Ledus.S2	AUGUSTUS	CDS	6564179	6565834	1	+	0	transcript_id "Ledus.S2G088500.t1"; gene_id "Ledus.S2G088500"
Ledus.S2	AUGUSTUS	exon	6564179	6565834	.	+	.	transcript_id "Ledus.S2G088500.t1"; gene_id "Ledus.S2G088500"
Ledus.S2	AUGUSTUS	intron	6565835	6565935	.	+	.	transcript_id "Ledus.S2G088500.t1"; gene_id "Ledus.S2G088500"
Ledus.S2	AUGUSTUS	CDS	6565936	6567462	0.8	+	0	transcript_id "Ledus.S2G088500.t1"; gene_id "Ledus.S2G088500"
Ledus.S2	AUGUSTUS	exon	6565936	6567462	.	+	.	transcript_id "Ledus.S2G088500.t1"; gene_id "Ledus.S2G088500"
Ledus.S2	AUGUSTUS	stop_codon	6567463	6567465	.	+	0	transcript_id "Ledus.S2G088500.t1"; gene_id "Ledus.S2G088500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg867.t1 is derived from g7728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5841785	5842021	.	+	.	Ledus.S2G074900
Ledus.S2	AUGUSTUS	transcript	5841785	5842021	.	+	.	transcript_id "Ledus.S2G074900.t1"; gene_id "Ledus.S2G074900"
Ledus.S2	AUGUSTUS	start_codon	5841785	5841787	.	+	0	transcript_id "Ledus.S2G074900.t1"; gene_id "Ledus.S2G074900"
Ledus.S2	AUGUSTUS	CDS	5841785	5842021	0.99	+	0	transcript_id "Ledus.S2G074900.t1"; gene_id "Ledus.S2G074900"
Ledus.S2	AUGUSTUS	exon	5841785	5842021	.	+	.	transcript_id "Ledus.S2G074900.t1"; gene_id "Ledus.S2G074900"
Ledus.S2	AUGUSTUS	stop_codon	5842022	5842024	.	+	0	transcript_id "Ledus.S2G074900.t1"; gene_id "Ledus.S2G074900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg600.t1 is derived from g7461.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3579106	3579835	.	+	.	Ledus.S2G048200
Ledus.S2	AUGUSTUS	transcript	3579106	3579835	.	+	.	transcript_id "Ledus.S2G048200.t1"; gene_id "Ledus.S2G048200"
Ledus.S2	AUGUSTUS	start_codon	3579106	3579108	.	+	0	transcript_id "Ledus.S2G048200.t1"; gene_id "Ledus.S2G048200"
Ledus.S2	AUGUSTUS	CDS	3579106	3579112	0.5	+	0	transcript_id "Ledus.S2G048200.t1"; gene_id "Ledus.S2G048200"
Ledus.S2	AUGUSTUS	exon	3579106	3579112	.	+	.	transcript_id "Ledus.S2G048200.t1"; gene_id "Ledus.S2G048200"
Ledus.S2	AUGUSTUS	intron	3579113	3579272	.	+	.	transcript_id "Ledus.S2G048200.t1"; gene_id "Ledus.S2G048200"
Ledus.S2	AUGUSTUS	CDS	3579273	3579835	0.43	+	2	transcript_id "Ledus.S2G048200.t1"; gene_id "Ledus.S2G048200"
Ledus.S2	AUGUSTUS	exon	3579273	3579835	.	+	.	transcript_id "Ledus.S2G048200.t1"; gene_id "Ledus.S2G048200"
Ledus.S2	AUGUSTUS	stop_codon	3579836	3579838	.	+	0	transcript_id "Ledus.S2G048200.t1"; gene_id "Ledus.S2G048200"
# This transcript jg7086.t2 is derived from g6617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7087.t1 is derived from g6618.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1484237	1486722	.	+	.	Ledus.C7G014800
Ledus.C7	AUGUSTUS	transcript	1484237	1486722	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	start_codon	1484237	1484239	.	+	0	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1484237	1484451	0.6	+	0	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1484237	1484451	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1484452	1484536	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1484537	1484604	0.98	+	1	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1484537	1484604	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1484605	1484672	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1484673	1484722	0.98	+	2	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1484673	1484722	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1484723	1484850	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1484851	1484955	1	+	0	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1484851	1484955	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1484956	1485112	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1485113	1485414	0.99	+	0	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1485113	1485414	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1485415	1485512	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1485513	1485794	0.6	+	1	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1485513	1485794	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1485795	1485876	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1485877	1486090	1	+	1	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1485877	1486090	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1486091	1486222	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1486223	1486374	1	+	0	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1486223	1486374	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1486375	1486463	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1486464	1486722	0.99	+	1	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1486464	1486722	.	+	.	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	stop_codon	1486723	1486725	.	+	0	transcript_id "Ledus.C7G014800.t1"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	transcript	1484237	1486722	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	start_codon	1484237	1484239	.	+	0	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1484237	1484322	0.46	+	0	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1484237	1484322	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1484323	1484419	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1484420	1484451	0.74	+	1	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1484420	1484451	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1484452	1484536	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1484537	1484604	0.79	+	2	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1484537	1484604	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1484605	1484850	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1484851	1484955	0.96	+	0	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1484851	1484955	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1484956	1485112	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1485113	1485414	0.99	+	0	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1485113	1485414	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1485415	1485512	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1485513	1485794	0.75	+	1	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1485513	1485794	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1485795	1485876	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1485877	1486090	1	+	1	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1485877	1486090	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1486091	1486222	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1486223	1486374	1	+	0	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1486223	1486374	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1486375	1486463	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1486464	1486722	1	+	1	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1486464	1486722	.	+	.	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	stop_codon	1486723	1486725	.	+	0	transcript_id "Ledus.C7G014800.t2"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	transcript	1484237	1486722	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	start_codon	1484237	1484239	.	+	0	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1484237	1484322	0.42	+	0	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1484237	1484322	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1484323	1484419	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1484420	1484451	0.7	+	1	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1484420	1484451	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1484452	1484536	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1484537	1484604	0.8	+	2	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1484537	1484604	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1484605	1484850	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1484851	1484955	0.94	+	0	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1484851	1484955	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1484956	1485112	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1485113	1485414	0.95	+	0	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1485113	1485414	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1485415	1485512	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1485513	1485794	0.63	+	1	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1485513	1485794	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1485795	1485876	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1485877	1486090	1	+	1	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1485877	1486090	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1486091	1486189	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1486190	1486374	0.85	+	0	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1486190	1486374	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	intron	1486375	1486463	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	CDS	1486464	1486722	1	+	1	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	exon	1486464	1486722	.	+	.	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
Ledus.C7	AUGUSTUS	stop_codon	1486723	1486725	.	+	0	transcript_id "Ledus.C7G014800.t3"; gene_id "Ledus.C7G014800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4175.t1 is derived from g1611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15193300	15194925	.	-	.	Ledus.S1G159600
Ledus.S1	AUGUSTUS	transcript	15193300	15194925	.	-	.	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	stop_codon	15193297	15193299	.	-	0	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	CDS	15193300	15193324	0.85	-	1	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	exon	15193300	15193324	.	-	.	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	intron	15193325	15193524	.	-	.	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	CDS	15193525	15193533	0.9	-	1	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	exon	15193525	15193533	.	-	.	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	intron	15193534	15193754	.	-	.	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	CDS	15193755	15193984	0.99	-	0	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	exon	15193755	15193984	.	-	.	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	intron	15193985	15194172	.	-	.	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	CDS	15194173	15194328	1	-	0	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	exon	15194173	15194328	.	-	.	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	intron	15194329	15194520	.	-	.	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	CDS	15194521	15194925	0.65	-	0	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	exon	15194521	15194925	.	-	.	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
Ledus.S1	AUGUSTUS	start_codon	15194923	15194925	.	-	0	transcript_id "Ledus.S1G159600.t1"; gene_id "Ledus.S1G159600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13085.t1 is derived from g6895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5287223	5287459	.	+	.	Ledus.S6G014700
Ledus.S6	AUGUSTUS	transcript	5287223	5287459	.	+	.	transcript_id "Ledus.S6G014700.t1"; gene_id "Ledus.S6G014700"
Ledus.S6	AUGUSTUS	start_codon	5287223	5287225	.	+	0	transcript_id "Ledus.S6G014700.t1"; gene_id "Ledus.S6G014700"
Ledus.S6	AUGUSTUS	CDS	5287223	5287459	0.98	+	0	transcript_id "Ledus.S6G014700.t1"; gene_id "Ledus.S6G014700"
Ledus.S6	AUGUSTUS	exon	5287223	5287459	.	+	.	transcript_id "Ledus.S6G014700.t1"; gene_id "Ledus.S6G014700"
Ledus.S6	AUGUSTUS	stop_codon	5287460	5287462	.	+	0	transcript_id "Ledus.S6G014700.t1"; gene_id "Ledus.S6G014700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11298.t1 is derived from g4916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3444558	3446478	.	-	.	Ledus.S4G045400
Ledus.S4	AUGUSTUS	transcript	3444558	3446478	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	stop_codon	3444555	3444557	.	-	0	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	CDS	3444558	3444743	1	-	0	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	exon	3444558	3444743	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	intron	3444744	3444836	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	CDS	3444837	3444948	1	-	1	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	exon	3444837	3444948	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	intron	3444949	3445032	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	CDS	3445033	3445099	1	-	2	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	exon	3445033	3445099	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	intron	3445100	3445185	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	CDS	3445186	3445226	1	-	1	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	exon	3445186	3445226	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	intron	3445227	3445312	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	CDS	3445313	3445405	1	-	1	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	exon	3445313	3445405	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	intron	3445406	3445525	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	CDS	3445526	3445638	1	-	0	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	exon	3445526	3445638	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	intron	3445639	3445707	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	CDS	3445708	3445827	1	-	0	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	exon	3445708	3445827	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	intron	3445828	3445916	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	CDS	3445917	3446059	1	-	2	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	exon	3445917	3446059	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	intron	3446060	3446207	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	CDS	3446208	3446322	1	-	0	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	exon	3446208	3446322	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	intron	3446323	3446409	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	CDS	3446410	3446478	0.98	-	0	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	exon	3446410	3446478	.	-	.	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
Ledus.S4	AUGUSTUS	start_codon	3446476	3446478	.	-	0	transcript_id "Ledus.S4G045400.t1"; gene_id "Ledus.S4G045400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3067.t1 is derived from g502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5628660	5633598	.	-	.	Ledus.S1G048800
Ledus.S1	AUGUSTUS	transcript	5628660	5633598	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	stop_codon	5628657	5628659	.	-	0	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	CDS	5628660	5628978	0.51	-	1	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	exon	5628660	5628978	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	intron	5628979	5629080	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	CDS	5629081	5629341	0.43	-	1	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	exon	5629081	5629341	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	intron	5629342	5629450	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	CDS	5629451	5629620	0.96	-	0	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	exon	5629451	5629620	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	intron	5629621	5629717	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	CDS	5629718	5629855	0.7	-	0	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	exon	5629718	5629855	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	intron	5629856	5629993	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	CDS	5629994	5630514	0.61	-	2	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	exon	5629994	5630514	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	intron	5630515	5630681	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	CDS	5630682	5630841	1	-	0	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	exon	5630682	5630841	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	intron	5630842	5631007	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	CDS	5631008	5631170	1	-	1	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	exon	5631008	5631170	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	intron	5631171	5632097	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	CDS	5632098	5632211	0.98	-	1	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	exon	5632098	5632211	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	intron	5632212	5632321	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	CDS	5632322	5632385	0.88	-	2	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	exon	5632322	5632385	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	intron	5632386	5632547	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	CDS	5632548	5632830	1	-	0	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	exon	5632548	5632830	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	intron	5632831	5632985	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	CDS	5632986	5633123	1	-	0	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	exon	5632986	5633123	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	intron	5633124	5633436	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	CDS	5633437	5633598	0.94	-	0	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	exon	5633437	5633598	.	-	.	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
Ledus.S1	AUGUSTUS	start_codon	5633596	5633598	.	-	0	transcript_id "Ledus.S1G048800.t1"; gene_id "Ledus.S1G048800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9566.t1 is derived from g10596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7837023	7841592	.	+	.	Ledus.S3G104300
Ledus.S3	AUGUSTUS	transcript	7837023	7841592	.	+	.	transcript_id "Ledus.S3G104300.t1"; gene_id "Ledus.S3G104300"
Ledus.S3	AUGUSTUS	start_codon	7837023	7837025	.	+	0	transcript_id "Ledus.S3G104300.t1"; gene_id "Ledus.S3G104300"
Ledus.S3	AUGUSTUS	CDS	7837023	7837130	0.05	+	0	transcript_id "Ledus.S3G104300.t1"; gene_id "Ledus.S3G104300"
Ledus.S3	AUGUSTUS	exon	7837023	7837130	.	+	.	transcript_id "Ledus.S3G104300.t1"; gene_id "Ledus.S3G104300"
Ledus.S3	AUGUSTUS	intron	7837131	7840627	.	+	.	transcript_id "Ledus.S3G104300.t1"; gene_id "Ledus.S3G104300"
Ledus.S3	AUGUSTUS	CDS	7840628	7840814	0.25	+	0	transcript_id "Ledus.S3G104300.t1"; gene_id "Ledus.S3G104300"
Ledus.S3	AUGUSTUS	exon	7840628	7840814	.	+	.	transcript_id "Ledus.S3G104300.t1"; gene_id "Ledus.S3G104300"
Ledus.S3	AUGUSTUS	intron	7840815	7841530	.	+	.	transcript_id "Ledus.S3G104300.t1"; gene_id "Ledus.S3G104300"
Ledus.S3	AUGUSTUS	CDS	7841531	7841592	0.01	+	2	transcript_id "Ledus.S3G104300.t1"; gene_id "Ledus.S3G104300"
Ledus.S3	AUGUSTUS	exon	7841531	7841592	.	+	.	transcript_id "Ledus.S3G104300.t1"; gene_id "Ledus.S3G104300"
Ledus.S3	AUGUSTUS	stop_codon	7841593	7841595	.	+	0	transcript_id "Ledus.S3G104300.t1"; gene_id "Ledus.S3G104300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12877.t1 is derived from g4450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	310118	310393	.	-	.	Ledus.C10G002000
Ledus.C10	AUGUSTUS	transcript	310118	310393	.	-	.	transcript_id "Ledus.C10G002000.t1"; gene_id "Ledus.C10G002000"
Ledus.C10	AUGUSTUS	stop_codon	310115	310117	.	-	0	transcript_id "Ledus.C10G002000.t1"; gene_id "Ledus.C10G002000"
Ledus.C10	AUGUSTUS	CDS	310118	310393	0.7	-	0	transcript_id "Ledus.C10G002000.t1"; gene_id "Ledus.C10G002000"
Ledus.C10	AUGUSTUS	exon	310118	310393	.	-	.	transcript_id "Ledus.C10G002000.t1"; gene_id "Ledus.C10G002000"
Ledus.C10	AUGUSTUS	start_codon	310391	310393	.	-	0	transcript_id "Ledus.C10G002000.t1"; gene_id "Ledus.C10G002000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8948.t1 is derived from g9978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3385228	3388438	.	+	.	Ledus.S3G042500
Ledus.S3	AUGUSTUS	transcript	3385228	3388438	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	start_codon	3385228	3385230	.	+	0	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3385228	3385287	0.99	+	0	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3385228	3385287	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3385288	3385379	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3385380	3385396	1	+	0	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3385380	3385396	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3385397	3385489	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3385490	3385598	1	+	1	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3385490	3385598	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3385599	3385685	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3385686	3385722	1	+	0	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3385686	3385722	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3385723	3385806	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3385807	3385996	1	+	2	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3385807	3385996	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3385997	3386071	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3386072	3386150	1	+	1	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3386072	3386150	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3386151	3386237	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3386238	3386282	1	+	0	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3386238	3386282	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3386283	3386373	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3386374	3386523	1	+	0	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3386374	3386523	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3386524	3386606	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3386607	3386730	1	+	0	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3386607	3386730	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3386731	3386820	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3386821	3386921	1	+	2	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3386821	3386921	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3386922	3387011	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3387012	3387109	1	+	0	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3387012	3387109	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3387110	3387193	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3387194	3387286	1	+	1	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3387194	3387286	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3387287	3387482	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3387483	3387615	1	+	1	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3387483	3387615	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3387616	3387696	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3387697	3387787	1	+	0	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3387697	3387787	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	intron	3387788	3387929	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	CDS	3387930	3388438	0.83	+	2	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	exon	3387930	3388438	.	+	.	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
Ledus.S3	AUGUSTUS	stop_codon	3388439	3388441	.	+	0	transcript_id "Ledus.S3G042500.t1"; gene_id "Ledus.S3G042500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5564.t1 is derived from g3003.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25164476	25165580	.	-	.	Ledus.S1G298500
Ledus.S1	AUGUSTUS	transcript	25164476	25165580	.	-	.	transcript_id "Ledus.S1G298500.t1"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	stop_codon	25164473	25164475	.	-	0	transcript_id "Ledus.S1G298500.t1"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	CDS	25164476	25165440	1	-	2	transcript_id "Ledus.S1G298500.t1"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	exon	25164476	25165440	.	-	.	transcript_id "Ledus.S1G298500.t1"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	intron	25165441	25165519	.	-	.	transcript_id "Ledus.S1G298500.t1"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	CDS	25165520	25165580	0.99	-	0	transcript_id "Ledus.S1G298500.t1"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	exon	25165520	25165580	.	-	.	transcript_id "Ledus.S1G298500.t1"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	start_codon	25165578	25165580	.	-	0	transcript_id "Ledus.S1G298500.t1"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	transcript	25164476	25165522	.	-	.	transcript_id "Ledus.S1G298500.t2"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	stop_codon	25164473	25164475	.	-	0	transcript_id "Ledus.S1G298500.t2"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	CDS	25164476	25165432	0.55	-	0	transcript_id "Ledus.S1G298500.t2"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	exon	25164476	25165432	.	-	.	transcript_id "Ledus.S1G298500.t2"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	intron	25165433	25165519	.	-	.	transcript_id "Ledus.S1G298500.t2"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	CDS	25165520	25165522	0.55	-	0	transcript_id "Ledus.S1G298500.t2"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	exon	25165520	25165522	.	-	.	transcript_id "Ledus.S1G298500.t2"; gene_id "Ledus.S1G298500"
Ledus.S1	AUGUSTUS	start_codon	25165520	25165522	.	-	0	transcript_id "Ledus.S1G298500.t2"; gene_id "Ledus.S1G298500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10240.t1 is derived from g11270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13732422	13733657	.	+	.	Ledus.S3G171700
Ledus.S3	AUGUSTUS	transcript	13732422	13733657	.	+	.	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	start_codon	13732422	13732424	.	+	0	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	CDS	13732422	13732826	0.99	+	0	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	exon	13732422	13732826	.	+	.	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	intron	13732827	13732952	.	+	.	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	CDS	13732953	13733033	1	+	0	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	exon	13732953	13733033	.	+	.	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	intron	13733034	13733154	.	+	.	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	CDS	13733155	13733256	1	+	0	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	exon	13733155	13733256	.	+	.	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	intron	13733257	13733395	.	+	.	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	CDS	13733396	13733470	1	+	0	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	exon	13733396	13733470	.	+	.	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	intron	13733471	13733564	.	+	.	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	CDS	13733565	13733657	1	+	0	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	exon	13733565	13733657	.	+	.	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
Ledus.S3	AUGUSTUS	stop_codon	13733658	13733660	.	+	0	transcript_id "Ledus.S3G171700.t1"; gene_id "Ledus.S3G171700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5314.t1 is derived from g2753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23271700	23273538	.	-	.	Ledus.S1G273500
Ledus.S1	AUGUSTUS	transcript	23271700	23273538	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	stop_codon	23271697	23271699	.	-	0	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	CDS	23271700	23271828	1	-	0	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	exon	23271700	23271828	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	intron	23271829	23271945	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	CDS	23271946	23272029	1	-	0	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	exon	23271946	23272029	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	intron	23272030	23272110	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	CDS	23272111	23272164	1	-	0	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	exon	23272111	23272164	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	intron	23272165	23272234	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	CDS	23272235	23272308	1	-	2	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	exon	23272235	23272308	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	intron	23272309	23272402	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	CDS	23272403	23272499	1	-	0	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	exon	23272403	23272499	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	intron	23272500	23272660	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	CDS	23272661	23272720	1	-	0	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	exon	23272661	23272720	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	intron	23272721	23272846	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	CDS	23272847	23272969	0.96	-	0	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	exon	23272847	23272969	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	intron	23272970	23273073	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	CDS	23273074	23273175	1	-	0	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	exon	23273074	23273175	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	intron	23273176	23273262	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	CDS	23273263	23273538	0.81	-	0	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	exon	23273263	23273538	.	-	.	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
Ledus.S1	AUGUSTUS	start_codon	23273536	23273538	.	-	0	transcript_id "Ledus.S1G273500.t1"; gene_id "Ledus.S1G273500"
# This transcript jg4829.t2 is derived from g2267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4830.t1 is derived from g2268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20014659	20016452	.	+	.	Ledus.S1G225100
Ledus.S1	AUGUSTUS	transcript	20014659	20016452	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	start_codon	20014659	20014661	.	+	0	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	CDS	20014659	20014753	0.96	+	0	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	exon	20014659	20014753	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	intron	20014754	20014894	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	CDS	20014895	20014997	1	+	1	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	exon	20014895	20014997	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	intron	20014998	20015144	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	CDS	20015145	20015291	0.99	+	0	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	exon	20015145	20015291	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	intron	20015292	20015403	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	CDS	20015404	20015511	0.99	+	0	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	exon	20015404	20015511	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	intron	20015512	20015609	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	CDS	20015610	20015706	1	+	0	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	exon	20015610	20015706	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	intron	20015707	20015822	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	CDS	20015823	20015939	1	+	2	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	exon	20015823	20015939	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	intron	20015940	20016029	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	CDS	20016030	20016162	1	+	2	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	exon	20016030	20016162	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	intron	20016163	20016256	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	CDS	20016257	20016452	1	+	1	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	exon	20016257	20016452	.	+	.	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
Ledus.S1	AUGUSTUS	stop_codon	20016453	20016455	.	+	0	transcript_id "Ledus.S1G225100.t1"; gene_id "Ledus.S1G225100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3637.t1 is derived from g1073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10323715	10324175	.	-	.	Ledus.S1G105800
Ledus.S1	AUGUSTUS	transcript	10323715	10324175	.	-	.	transcript_id "Ledus.S1G105800.t1"; gene_id "Ledus.S1G105800"
Ledus.S1	AUGUSTUS	stop_codon	10323712	10323714	.	-	0	transcript_id "Ledus.S1G105800.t1"; gene_id "Ledus.S1G105800"
Ledus.S1	AUGUSTUS	CDS	10323715	10323735	1	-	0	transcript_id "Ledus.S1G105800.t1"; gene_id "Ledus.S1G105800"
Ledus.S1	AUGUSTUS	exon	10323715	10323735	.	-	.	transcript_id "Ledus.S1G105800.t1"; gene_id "Ledus.S1G105800"
Ledus.S1	AUGUSTUS	intron	10323736	10323824	.	-	.	transcript_id "Ledus.S1G105800.t1"; gene_id "Ledus.S1G105800"
Ledus.S1	AUGUSTUS	CDS	10323825	10324175	0.99	-	0	transcript_id "Ledus.S1G105800.t1"; gene_id "Ledus.S1G105800"
Ledus.S1	AUGUSTUS	exon	10323825	10324175	.	-	.	transcript_id "Ledus.S1G105800.t1"; gene_id "Ledus.S1G105800"
Ledus.S1	AUGUSTUS	start_codon	10324173	10324175	.	-	0	transcript_id "Ledus.S1G105800.t1"; gene_id "Ledus.S1G105800"
# This transcript jg9512.t2 is derived from g10542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9513.t1 is derived from g10543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7528920	7531201	.	+	.	Ledus.S3G099000
Ledus.S3	AUGUSTUS	transcript	7528920	7531201	.	+	.	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	start_codon	7528920	7528922	.	+	0	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	CDS	7528920	7529021	0.55	+	0	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	exon	7528920	7529021	.	+	.	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	intron	7529022	7529197	.	+	.	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	CDS	7529198	7529901	1	+	0	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	exon	7529198	7529901	.	+	.	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	intron	7529902	7530060	.	+	.	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	CDS	7530061	7530391	1	+	1	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	exon	7530061	7530391	.	+	.	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	intron	7530392	7530485	.	+	.	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	CDS	7530486	7530584	1	+	0	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	exon	7530486	7530584	.	+	.	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	intron	7530585	7530689	.	+	.	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	CDS	7530690	7530810	0.98	+	0	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	exon	7530690	7530810	.	+	.	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	intron	7530811	7530989	.	+	.	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	CDS	7530990	7531201	0.98	+	2	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	exon	7530990	7531201	.	+	.	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
Ledus.S3	AUGUSTUS	stop_codon	7531202	7531204	.	+	0	transcript_id "Ledus.S3G099000.t1"; gene_id "Ledus.S3G099000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg755.t1 is derived from g7616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4832821	4833454	.	+	.	Ledus.S2G063700
Ledus.S2	AUGUSTUS	transcript	4832821	4833454	.	+	.	transcript_id "Ledus.S2G063700.t1"; gene_id "Ledus.S2G063700"
Ledus.S2	AUGUSTUS	start_codon	4832821	4832823	.	+	0	transcript_id "Ledus.S2G063700.t1"; gene_id "Ledus.S2G063700"
Ledus.S2	AUGUSTUS	CDS	4832821	4832928	0.43	+	0	transcript_id "Ledus.S2G063700.t1"; gene_id "Ledus.S2G063700"
Ledus.S2	AUGUSTUS	exon	4832821	4832928	.	+	.	transcript_id "Ledus.S2G063700.t1"; gene_id "Ledus.S2G063700"
Ledus.S2	AUGUSTUS	intron	4832929	4833026	.	+	.	transcript_id "Ledus.S2G063700.t1"; gene_id "Ledus.S2G063700"
Ledus.S2	AUGUSTUS	CDS	4833027	4833069	0.39	+	0	transcript_id "Ledus.S2G063700.t1"; gene_id "Ledus.S2G063700"
Ledus.S2	AUGUSTUS	exon	4833027	4833069	.	+	.	transcript_id "Ledus.S2G063700.t1"; gene_id "Ledus.S2G063700"
Ledus.S2	AUGUSTUS	intron	4833070	4833227	.	+	.	transcript_id "Ledus.S2G063700.t1"; gene_id "Ledus.S2G063700"
Ledus.S2	AUGUSTUS	CDS	4833228	4833454	0.54	+	2	transcript_id "Ledus.S2G063700.t1"; gene_id "Ledus.S2G063700"
Ledus.S2	AUGUSTUS	exon	4833228	4833454	.	+	.	transcript_id "Ledus.S2G063700.t1"; gene_id "Ledus.S2G063700"
Ledus.S2	AUGUSTUS	stop_codon	4833455	4833457	.	+	0	transcript_id "Ledus.S2G063700.t1"; gene_id "Ledus.S2G063700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11760.t1 is derived from g5379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6605352	6606754	.	-	.	Ledus.S4G091600
Ledus.S4	AUGUSTUS	transcript	6605352	6606754	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	stop_codon	6605349	6605351	.	-	0	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	CDS	6605352	6605459	1	-	0	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	exon	6605352	6605459	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	intron	6605460	6605549	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	CDS	6605550	6605631	1	-	1	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	exon	6605550	6605631	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	intron	6605632	6605710	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	CDS	6605711	6605775	1	-	0	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	exon	6605711	6605775	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	intron	6605776	6605860	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	CDS	6605861	6605949	1	-	2	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	exon	6605861	6605949	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	intron	6605950	6606035	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	CDS	6606036	6606144	1	-	0	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	exon	6606036	6606144	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	intron	6606145	6606230	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	CDS	6606231	6606315	1	-	1	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	exon	6606231	6606315	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	intron	6606316	6606403	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	CDS	6606404	6606467	1	-	2	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	exon	6606404	6606467	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	intron	6606468	6606547	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	CDS	6606548	6606593	1	-	0	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	exon	6606548	6606593	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	intron	6606594	6606685	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	CDS	6606686	6606754	0.4	-	0	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	exon	6606686	6606754	.	-	.	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
Ledus.S4	AUGUSTUS	start_codon	6606752	6606754	.	-	0	transcript_id "Ledus.S4G091600.t1"; gene_id "Ledus.S4G091600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1647.t1 is derived from g8508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11635165	11635847	.	+	.	Ledus.S2G152900
Ledus.S2	AUGUSTUS	transcript	11635165	11635847	.	+	.	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	start_codon	11635165	11635167	.	+	0	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	CDS	11635165	11635167	1	+	0	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	exon	11635165	11635167	.	+	.	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	intron	11635168	11635260	.	+	.	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	CDS	11635261	11635354	1	+	0	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	exon	11635261	11635354	.	+	.	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	intron	11635355	11635441	.	+	.	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	CDS	11635442	11635563	1	+	2	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	exon	11635442	11635563	.	+	.	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	intron	11635564	11635712	.	+	.	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	CDS	11635713	11635847	1	+	0	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	exon	11635713	11635847	.	+	.	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
Ledus.S2	AUGUSTUS	stop_codon	11635848	11635850	.	+	0	transcript_id "Ledus.S2G152900.t1"; gene_id "Ledus.S2G152900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg5394.t1 is derived from g2833.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23979534	23984666	.	+	.	Ledus.S1G281500
Ledus.S1	AUGUSTUS	transcript	23979534	23982161	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	start_codon	23979534	23979536	.	+	0	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23979534	23979577	1	+	0	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23979534	23979577	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23979578	23979713	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23979714	23979878	1	+	1	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23979714	23979878	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23979879	23979960	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23979961	23980017	1	+	1	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23979961	23980017	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23980018	23980533	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23980534	23980659	1	+	1	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23980534	23980659	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23980660	23980812	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23980813	23980891	1	+	1	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23980813	23980891	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23980892	23980982	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23980983	23981075	0.97	+	0	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23980983	23981075	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23981076	23981179	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23981180	23981293	0.97	+	0	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23981180	23981293	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23981294	23981382	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23981383	23981421	0.99	+	0	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23981383	23981421	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23981422	23981770	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23981771	23981834	0.99	+	0	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23981771	23981834	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23981835	23982147	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23982148	23982161	0.99	+	2	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23982148	23982161	.	+	.	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	stop_codon	23982162	23982164	.	+	0	transcript_id "Ledus.S1G281500.t1"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	transcript	23979534	23984666	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	start_codon	23979534	23979536	.	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23979534	23979577	0.99	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23979534	23979577	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23979578	23979713	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23979714	23979878	1	+	1	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23979714	23979878	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23979879	23979960	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23979961	23980017	1	+	1	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23979961	23980017	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23980018	23980533	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23980534	23980659	1	+	1	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23980534	23980659	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23980660	23980812	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23980813	23980891	1	+	1	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23980813	23980891	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23980892	23980982	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23980983	23981075	0.96	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23980983	23981075	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23981076	23981179	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23981180	23981293	0.96	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23981180	23981293	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23981294	23981382	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23981383	23981421	0.99	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23981383	23981421	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23981422	23981770	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23981771	23981834	0.99	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23981771	23981834	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23981835	23982142	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23982143	23982390	0.97	+	2	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23982143	23982390	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23982391	23982506	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23982507	23982557	0.89	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23982507	23982557	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23982558	23982659	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23982660	23982743	1	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23982660	23982743	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23982744	23982853	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23982854	23982928	1	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23982854	23982928	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23982929	23983018	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23983019	23983072	1	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23983019	23983072	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23983073	23983155	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23983156	23983254	1	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23983156	23983254	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23983255	23983441	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23983442	23983480	1	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23983442	23983480	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23983481	23983586	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23983587	23983709	0.97	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23983587	23983709	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23983710	23983820	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23983821	23983898	1	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23983821	23983898	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23983899	23984043	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23984044	23984135	1	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23984044	23984135	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23984136	23984233	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23984234	23984281	1	+	1	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23984234	23984281	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23984282	23984374	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23984375	23984464	1	+	1	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23984375	23984464	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	intron	23984465	23984551	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	CDS	23984552	23984666	1	+	1	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	exon	23984552	23984666	.	+	.	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
Ledus.S1	AUGUSTUS	stop_codon	23984667	23984669	.	+	0	transcript_id "Ledus.S1G281500.t2"; gene_id "Ledus.S1G281500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8853.t1 is derived from g9883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2312023	2320068	.	-	.	Ledus.S3G033000
Ledus.S3	AUGUSTUS	transcript	2312023	2320068	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	stop_codon	2312020	2312022	.	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2312023	2312133	0.94	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2312023	2312133	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2312134	2312217	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2312218	2312334	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2312218	2312334	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2312335	2312412	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2312413	2312472	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2312413	2312472	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2312473	2312570	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2312571	2312709	1	-	1	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2312571	2312709	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2312710	2312833	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2312834	2313018	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2312834	2313018	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2313019	2313153	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2313154	2313237	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2313154	2313237	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2313238	2313322	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2313323	2313445	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2313323	2313445	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2313446	2313602	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2313603	2313782	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2313603	2313782	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2313783	2313864	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2313865	2313934	1	-	1	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2313865	2313934	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2313935	2314024	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2314025	2314121	1	-	2	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2314025	2314121	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2314122	2314333	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2314334	2314409	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2314334	2314409	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2314410	2314670	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2314671	2314760	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2314671	2314760	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2314761	2314859	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2314860	2314961	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2314860	2314961	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2314962	2315129	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2315130	2315201	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2315130	2315201	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2315202	2315302	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2315303	2315476	0.99	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2315303	2315476	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2315477	2315620	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2315621	2315691	1	-	2	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2315621	2315691	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2315692	2315785	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2315786	2315931	1	-	1	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2315786	2315931	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2315932	2316053	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2316054	2316101	1	-	1	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2316054	2316101	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2316102	2316548	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2316549	2316624	1	-	2	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2316549	2316624	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2316625	2316831	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2316832	2316979	0.92	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2316832	2316979	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2316980	2317107	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2317108	2317182	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2317108	2317182	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2317183	2317288	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2317289	2317383	1	-	2	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2317289	2317383	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2317384	2317503	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2317504	2317625	0.99	-	1	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2317504	2317625	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2317626	2317767	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2317768	2318489	0.8	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2317768	2318489	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2318490	2318602	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2318603	2318749	0.75	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2318603	2318749	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2318750	2318888	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2318889	2319005	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2318889	2319005	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2319006	2319430	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2319431	2319528	1	-	2	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2319431	2319528	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2319529	2319613	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2319614	2319770	1	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2319614	2319770	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	intron	2319771	2319858	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	CDS	2319859	2320068	0.41	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	exon	2319859	2320068	.	-	.	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
Ledus.S3	AUGUSTUS	start_codon	2320066	2320068	.	-	0	transcript_id "Ledus.S3G033000.t1"; gene_id "Ledus.S3G033000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6905.t1 is derived from g4349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35101147	35101626	.	+	.	Ledus.S1G432600
Ledus.S1	AUGUSTUS	transcript	35101147	35101626	.	+	.	transcript_id "Ledus.S1G432600.t1"; gene_id "Ledus.S1G432600"
Ledus.S1	AUGUSTUS	start_codon	35101147	35101149	.	+	0	transcript_id "Ledus.S1G432600.t1"; gene_id "Ledus.S1G432600"
Ledus.S1	AUGUSTUS	CDS	35101147	35101626	0.62	+	0	transcript_id "Ledus.S1G432600.t1"; gene_id "Ledus.S1G432600"
Ledus.S1	AUGUSTUS	exon	35101147	35101626	.	+	.	transcript_id "Ledus.S1G432600.t1"; gene_id "Ledus.S1G432600"
Ledus.S1	AUGUSTUS	stop_codon	35101627	35101629	.	+	0	transcript_id "Ledus.S1G432600.t1"; gene_id "Ledus.S1G432600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13169.t1 is derived from g6979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7963090	7963566	.	-	.	Ledus.S6G023100
Ledus.S6	AUGUSTUS	transcript	7963090	7963566	.	-	.	transcript_id "Ledus.S6G023100.t1"; gene_id "Ledus.S6G023100"
Ledus.S6	AUGUSTUS	stop_codon	7963087	7963089	.	-	0	transcript_id "Ledus.S6G023100.t1"; gene_id "Ledus.S6G023100"
Ledus.S6	AUGUSTUS	CDS	7963090	7963566	0.5	-	0	transcript_id "Ledus.S6G023100.t1"; gene_id "Ledus.S6G023100"
Ledus.S6	AUGUSTUS	exon	7963090	7963566	.	-	.	transcript_id "Ledus.S6G023100.t1"; gene_id "Ledus.S6G023100"
Ledus.S6	AUGUSTUS	start_codon	7963564	7963566	.	-	0	transcript_id "Ledus.S6G023100.t1"; gene_id "Ledus.S6G023100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3138.t1 is derived from g573.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6227545	6230234	.	+	.	Ledus.S1G055900
Ledus.S1	AUGUSTUS	transcript	6227545	6230234	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	start_codon	6227545	6227547	.	+	0	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6227545	6227632	1	+	0	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6227545	6227632	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6227633	6227825	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6227826	6227861	1	+	2	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6227826	6227861	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6227862	6227958	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6227959	6228015	0.81	+	2	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6227959	6228015	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6228016	6228133	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6228134	6228142	1	+	2	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6228134	6228142	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6228143	6228323	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6228324	6228469	1	+	2	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6228324	6228469	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6228470	6228739	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6228740	6228847	1	+	0	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6228740	6228847	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6228848	6228936	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6228937	6229119	1	+	0	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6228937	6229119	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6229120	6229219	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6229220	6229286	1	+	0	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6229220	6229286	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6229287	6229361	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6229362	6229621	0.97	+	2	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6229362	6229621	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6229622	6229724	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6229725	6230234	0.88	+	0	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6229725	6230234	.	+	.	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	stop_codon	6230235	6230237	.	+	0	transcript_id "Ledus.S1G055900.t1"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	transcript	6227576	6230234	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	start_codon	6227576	6227578	.	+	0	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6227576	6227632	0.59	+	0	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6227576	6227632	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6227633	6227770	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6227771	6227861	0.94	+	0	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6227771	6227861	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6227862	6227958	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6227959	6228015	0.82	+	2	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6227959	6228015	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6228016	6228133	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6228134	6228142	0.98	+	2	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6228134	6228142	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6228143	6228323	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6228324	6228469	1	+	2	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6228324	6228469	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6228470	6228739	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6228740	6228847	1	+	0	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6228740	6228847	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6228848	6228936	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6228937	6229119	1	+	0	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6228937	6229119	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6229120	6229219	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6229220	6229286	1	+	0	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6229220	6229286	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6229287	6229361	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6229362	6229621	0.99	+	2	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6229362	6229621	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	intron	6229622	6229724	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	CDS	6229725	6230234	0.93	+	0	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	exon	6229725	6230234	.	+	.	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
Ledus.S1	AUGUSTUS	stop_codon	6230235	6230237	.	+	0	transcript_id "Ledus.S1G055900.t2"; gene_id "Ledus.S1G055900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1191.t1 is derived from g8052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8428405	8428890	.	+	.	Ledus.S2G107300
Ledus.S2	AUGUSTUS	transcript	8428405	8428890	.	+	.	transcript_id "Ledus.S2G107300.t1"; gene_id "Ledus.S2G107300"
Ledus.S2	AUGUSTUS	start_codon	8428405	8428407	.	+	0	transcript_id "Ledus.S2G107300.t1"; gene_id "Ledus.S2G107300"
Ledus.S2	AUGUSTUS	CDS	8428405	8428448	0.96	+	0	transcript_id "Ledus.S2G107300.t1"; gene_id "Ledus.S2G107300"
Ledus.S2	AUGUSTUS	exon	8428405	8428448	.	+	.	transcript_id "Ledus.S2G107300.t1"; gene_id "Ledus.S2G107300"
Ledus.S2	AUGUSTUS	intron	8428449	8428589	.	+	.	transcript_id "Ledus.S2G107300.t1"; gene_id "Ledus.S2G107300"
Ledus.S2	AUGUSTUS	CDS	8428590	8428890	0.95	+	1	transcript_id "Ledus.S2G107300.t1"; gene_id "Ledus.S2G107300"
Ledus.S2	AUGUSTUS	exon	8428590	8428890	.	+	.	transcript_id "Ledus.S2G107300.t1"; gene_id "Ledus.S2G107300"
Ledus.S2	AUGUSTUS	stop_codon	8428891	8428893	.	+	0	transcript_id "Ledus.S2G107300.t1"; gene_id "Ledus.S2G107300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4707.t1 is derived from g2145.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19144123	19145720	.	+	.	Ledus.S1G212800
Ledus.S1	AUGUSTUS	transcript	19144123	19145720	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	start_codon	19144123	19144125	.	+	0	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19144123	19144291	0.99	+	0	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19144123	19144291	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	intron	19144292	19144390	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19144391	19144590	1	+	2	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19144391	19144590	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	intron	19144591	19144681	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19144682	19144691	0.98	+	0	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19144682	19144691	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	intron	19144692	19144752	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19144753	19144841	0.98	+	2	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19144753	19144841	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	intron	19144842	19144920	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19144921	19145135	0.99	+	0	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19144921	19145135	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	intron	19145136	19145238	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19145239	19145497	0.97	+	1	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19145239	19145497	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	intron	19145498	19145588	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19145589	19145720	0.99	+	0	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19145589	19145720	.	+	.	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	stop_codon	19145721	19145723	.	+	0	transcript_id "Ledus.S1G212800.t1"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	transcript	19144123	19145720	.	+	.	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	start_codon	19144123	19144125	.	+	0	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19144123	19144291	1	+	0	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19144123	19144291	.	+	.	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	intron	19144292	19144390	.	+	.	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19144391	19144590	0.98	+	2	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19144391	19144590	.	+	.	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	intron	19144591	19144691	.	+	.	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19144692	19144841	0.98	+	0	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19144692	19144841	.	+	.	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	intron	19144842	19144920	.	+	.	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19144921	19145135	1	+	0	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19144921	19145135	.	+	.	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	intron	19145136	19145238	.	+	.	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19145239	19145497	0.96	+	1	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19145239	19145497	.	+	.	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	intron	19145498	19145588	.	+	.	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	CDS	19145589	19145720	1	+	0	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	exon	19145589	19145720	.	+	.	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
Ledus.S1	AUGUSTUS	stop_codon	19145721	19145723	.	+	0	transcript_id "Ledus.S1G212800.t2"; gene_id "Ledus.S1G212800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1435.t1 is derived from g8296.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10074416	10081562	.	-	.	Ledus.S2G131700
Ledus.S2	AUGUSTUS	transcript	10074416	10081562	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	stop_codon	10074413	10074415	.	-	0	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10074416	10074495	0.5	-	2	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10074416	10074495	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10074496	10074649	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10074650	10074717	0.66	-	1	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10074650	10074717	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10074718	10074833	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10074834	10074932	0.68	-	1	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10074834	10074932	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10074933	10075023	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10075024	10075113	1	-	1	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10075024	10075113	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10075114	10075244	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10075245	10075324	0.79	-	0	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10075245	10075324	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10075325	10075518	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10075519	10075738	1	-	1	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10075519	10075738	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10075739	10075880	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10075881	10076007	1	-	2	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10075881	10076007	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10076008	10076173	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10076174	10076396	0.99	-	0	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10076174	10076396	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10076397	10076496	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10076497	10076559	1	-	0	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10076497	10076559	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10076560	10076670	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10076671	10076764	1	-	1	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10076671	10076764	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10076765	10077086	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10077087	10077270	1	-	2	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10077087	10077270	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10077271	10077450	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10077451	10077482	0.37	-	1	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10077451	10077482	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10077483	10077583	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10077584	10077797	0.43	-	2	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10077584	10077797	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10077798	10078068	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10078069	10079412	0.3	-	2	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10078069	10079412	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10079413	10079527	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10079528	10079771	0.47	-	0	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10079528	10079771	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10079772	10079870	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10079871	10080109	1	-	2	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10079871	10080109	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10080110	10080271	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10080272	10080397	1	-	2	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10080272	10080397	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10080398	10080483	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10080484	10080899	0.65	-	1	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10080484	10080899	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10080900	10081041	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10081042	10081157	0.71	-	0	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10081042	10081157	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10081158	10081339	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10081340	10081358	0.56	-	1	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10081340	10081358	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10081359	10081536	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10081537	10081562	0.63	-	0	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10081537	10081562	.	-	.	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	start_codon	10081560	10081562	.	-	0	transcript_id "Ledus.S2G131700.t1"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	transcript	10074416	10081517	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	stop_codon	10074413	10074415	.	-	0	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10074416	10074495	0.28	-	2	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10074416	10074495	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10074496	10074649	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10074650	10074717	0.48	-	1	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10074650	10074717	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10074718	10074833	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10074834	10074932	0.65	-	1	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10074834	10074932	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10074933	10075023	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10075024	10075113	1	-	1	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10075024	10075113	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10075114	10075244	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10075245	10075324	0.88	-	0	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10075245	10075324	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10075325	10075518	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10075519	10075738	1	-	1	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10075519	10075738	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10075739	10075880	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10075881	10076007	1	-	2	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10075881	10076007	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10076008	10076173	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10076174	10076396	1	-	0	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10076174	10076396	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10076397	10076496	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10076497	10076559	1	-	0	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10076497	10076559	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10076560	10076670	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10076671	10076764	1	-	1	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10076671	10076764	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10076765	10077086	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10077087	10077270	1	-	2	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10077087	10077270	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10077271	10077450	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10077451	10077482	0.47	-	1	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10077451	10077482	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10077483	10077583	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10077584	10077797	0.4	-	2	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10077584	10077797	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10077798	10078068	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10078069	10079412	0.26	-	2	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10078069	10079412	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10079413	10079527	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10079528	10079771	0.47	-	0	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10079528	10079771	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10079772	10079870	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10079871	10080109	1	-	2	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10079871	10080109	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10080110	10080271	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10080272	10080397	1	-	2	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10080272	10080397	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10080398	10080483	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10080484	10080899	0.61	-	1	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10080484	10080899	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10080900	10081041	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10081042	10081157	0.86	-	0	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10081042	10081157	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	intron	10081158	10081343	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	CDS	10081344	10081517	0.45	-	0	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	exon	10081344	10081517	.	-	.	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
Ledus.S2	AUGUSTUS	start_codon	10081515	10081517	.	-	0	transcript_id "Ledus.S2G131700.t2"; gene_id "Ledus.S2G131700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4452.t1 is derived from g1888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17168472	17171543	.	+	.	Ledus.S1G187300
Ledus.S1	AUGUSTUS	transcript	17168472	17171543	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	start_codon	17168472	17168474	.	+	0	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	CDS	17168472	17169116	0.91	+	0	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	exon	17168472	17169116	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	intron	17169117	17169261	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	CDS	17169262	17169327	0.87	+	0	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	exon	17169262	17169327	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	intron	17169328	17169446	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	CDS	17169447	17169525	0.98	+	0	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	exon	17169447	17169525	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	intron	17169526	17169635	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	CDS	17169636	17169715	0.9	+	2	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	exon	17169636	17169715	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	intron	17169716	17169822	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	CDS	17169823	17169846	1	+	0	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	exon	17169823	17169846	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	intron	17169847	17169985	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	CDS	17169986	17170107	1	+	0	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	exon	17169986	17170107	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	intron	17170108	17170288	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	CDS	17170289	17170550	1	+	1	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	exon	17170289	17170550	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	intron	17170551	17170693	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	CDS	17170694	17170747	1	+	0	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	exon	17170694	17170747	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	intron	17170748	17170906	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	CDS	17170907	17170953	1	+	0	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	exon	17170907	17170953	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	intron	17170954	17171043	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	CDS	17171044	17171128	1	+	1	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	exon	17171044	17171128	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	intron	17171129	17171219	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	CDS	17171220	17171283	1	+	0	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	exon	17171220	17171283	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	intron	17171284	17171415	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	CDS	17171416	17171543	1	+	2	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	exon	17171416	17171543	.	+	.	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
Ledus.S1	AUGUSTUS	stop_codon	17171544	17171546	.	+	0	transcript_id "Ledus.S1G187300.t1"; gene_id "Ledus.S1G187300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3233.t1 is derived from g668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7044089	7051599	.	+	.	Ledus.S1G065400
Ledus.S1	AUGUSTUS	transcript	7044089	7051599	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	start_codon	7044089	7044091	.	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7044089	7044541	0.89	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7044089	7044541	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7044542	7044631	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7044632	7044706	1	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7044632	7044706	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7044707	7044916	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7044917	7044997	1	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7044917	7044997	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7044998	7045291	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7045292	7045372	1	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7045292	7045372	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7045373	7045484	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7045485	7045567	1	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7045485	7045567	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7045568	7045694	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7045695	7045779	1	+	1	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7045695	7045779	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7045780	7045982	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7045983	7046108	1	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7045983	7046108	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7046109	7046278	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7046279	7046386	1	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7046279	7046386	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7046387	7046569	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7046570	7046614	1	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7046570	7046614	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7046615	7046755	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7046756	7046898	1	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7046756	7046898	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7046899	7047112	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7047113	7047245	1	+	1	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7047113	7047245	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7047246	7047433	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7047434	7047544	1	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7047434	7047544	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7047545	7047693	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7047694	7047772	0.99	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7047694	7047772	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7047773	7047885	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7047886	7048112	0.54	+	2	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7047886	7048112	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7048113	7048328	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7048329	7048474	1	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7048329	7048474	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7048475	7048571	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7048572	7048653	1	+	1	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7048572	7048653	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7048654	7048815	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7048816	7048926	1	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7048816	7048926	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7048927	7049025	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7049026	7049151	0.99	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7049026	7049151	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7049152	7049252	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7049253	7049380	0.99	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7049253	7049380	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7049381	7049476	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7049477	7049573	1	+	1	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7049477	7049573	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7049574	7049729	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7049730	7050712	1	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7049730	7050712	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7050713	7050794	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7050795	7051019	0.75	+	1	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7050795	7051019	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	intron	7051020	7051136	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	CDS	7051137	7051599	0.87	+	1	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	exon	7051137	7051599	.	+	.	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
Ledus.S1	AUGUSTUS	stop_codon	7051600	7051602	.	+	0	transcript_id "Ledus.S1G065400.t1"; gene_id "Ledus.S1G065400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1276.t1 is derived from g8137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9024657	9027257	.	-	.	Ledus.S2G115800
Ledus.S2	AUGUSTUS	transcript	9024657	9027257	.	-	.	transcript_id "Ledus.S2G115800.t1"; gene_id "Ledus.S2G115800"
Ledus.S2	AUGUSTUS	stop_codon	9024654	9024656	.	-	0	transcript_id "Ledus.S2G115800.t1"; gene_id "Ledus.S2G115800"
Ledus.S2	AUGUSTUS	CDS	9024657	9027257	0.99	-	0	transcript_id "Ledus.S2G115800.t1"; gene_id "Ledus.S2G115800"
Ledus.S2	AUGUSTUS	exon	9024657	9027257	.	-	.	transcript_id "Ledus.S2G115800.t1"; gene_id "Ledus.S2G115800"
Ledus.S2	AUGUSTUS	start_codon	9027255	9027257	.	-	0	transcript_id "Ledus.S2G115800.t1"; gene_id "Ledus.S2G115800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9267.t1 is derived from g10297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5713171	5714228	.	+	.	Ledus.S3G074400
Ledus.S3	AUGUSTUS	transcript	5713171	5714228	.	+	.	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	start_codon	5713171	5713173	.	+	0	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	CDS	5713171	5713453	1	+	0	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	exon	5713171	5713453	.	+	.	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	intron	5713454	5713559	.	+	.	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	CDS	5713560	5713824	0.96	+	2	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	exon	5713560	5713824	.	+	.	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	intron	5713825	5713916	.	+	.	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	CDS	5713917	5714141	1	+	1	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	exon	5713917	5714141	.	+	.	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	intron	5714142	5714227	.	+	.	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	CDS	5714228	5714228	1	+	1	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	exon	5714228	5714228	.	+	.	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
Ledus.S3	AUGUSTUS	stop_codon	5714229	5714231	.	+	0	transcript_id "Ledus.S3G074400.t1"; gene_id "Ledus.S3G074400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2686.t1 is derived from g119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1783720	1791340	.	+	.	Ledus.S1G010700
Ledus.S1	AUGUSTUS	transcript	1783720	1791340	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	start_codon	1783720	1783722	.	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1783720	1784057	0.78	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1783720	1784057	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1784058	1784552	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1784553	1784650	1	+	1	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1784553	1784650	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1784651	1784777	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1784778	1784867	1	+	2	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1784778	1784867	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1784868	1785015	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1785016	1785068	1	+	2	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1785016	1785068	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1785069	1785169	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1785170	1785235	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1785170	1785235	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1785236	1785315	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1785316	1785369	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1785316	1785369	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1785370	1785502	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1785503	1785562	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1785503	1785562	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1785563	1785671	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1785672	1785750	0.6	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1785672	1785750	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1785751	1785867	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1785868	1785935	1	+	2	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1785868	1785935	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1785936	1786028	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1786029	1786091	0.98	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1786029	1786091	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1786092	1786205	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1786206	1786310	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1786206	1786310	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1786311	1786571	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1786572	1786676	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1786572	1786676	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1786677	1786861	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1786862	1786969	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1786862	1786969	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1786970	1787076	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1787077	1787223	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1787077	1787223	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1787224	1787352	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1787353	1787538	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1787353	1787538	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1787539	1787702	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1787703	1787885	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1787703	1787885	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1787886	1788057	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1788058	1788297	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1788058	1788297	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1788298	1788428	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1788429	1788569	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1788429	1788569	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1788570	1788663	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1788664	1788789	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1788664	1788789	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1788790	1788912	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1788913	1788963	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1788913	1788963	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1788964	1789061	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1789062	1789109	1	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1789062	1789109	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1789110	1789192	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1789193	1789471	0.93	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1789193	1789471	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1789472	1789621	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1789622	1790404	0.59	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1789622	1790404	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1790405	1790523	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1790524	1790615	0.32	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1790524	1790615	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1790616	1790722	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1790723	1790915	0.74	+	1	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1790723	1790915	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1790916	1791001	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1791002	1791013	0.56	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1791002	1791013	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1791014	1791102	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1791103	1791109	0.56	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1791103	1791109	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	intron	1791110	1791236	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	CDS	1791237	1791340	0.5	+	2	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	exon	1791237	1791340	.	+	.	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
Ledus.S1	AUGUSTUS	stop_codon	1791341	1791343	.	+	0	transcript_id "Ledus.S1G010700.t1"; gene_id "Ledus.S1G010700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2273.t1 is derived from g9136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16851045	16852534	.	+	.	Ledus.S2G215500
Ledus.S2	AUGUSTUS	transcript	16851045	16852534	.	+	.	transcript_id "Ledus.S2G215500.t1"; gene_id "Ledus.S2G215500"
Ledus.S2	AUGUSTUS	start_codon	16851045	16851047	.	+	0	transcript_id "Ledus.S2G215500.t1"; gene_id "Ledus.S2G215500"
Ledus.S2	AUGUSTUS	CDS	16851045	16851082	0.93	+	0	transcript_id "Ledus.S2G215500.t1"; gene_id "Ledus.S2G215500"
Ledus.S2	AUGUSTUS	exon	16851045	16851082	.	+	.	transcript_id "Ledus.S2G215500.t1"; gene_id "Ledus.S2G215500"
Ledus.S2	AUGUSTUS	intron	16851083	16851159	.	+	.	transcript_id "Ledus.S2G215500.t1"; gene_id "Ledus.S2G215500"
Ledus.S2	AUGUSTUS	CDS	16851160	16852534	0.8	+	1	transcript_id "Ledus.S2G215500.t1"; gene_id "Ledus.S2G215500"
Ledus.S2	AUGUSTUS	exon	16851160	16852534	.	+	.	transcript_id "Ledus.S2G215500.t1"; gene_id "Ledus.S2G215500"
Ledus.S2	AUGUSTUS	stop_codon	16852535	16852537	.	+	0	transcript_id "Ledus.S2G215500.t1"; gene_id "Ledus.S2G215500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8081.t1 is derived from g12752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9076791	9078423	.	+	.	Ledus.S5G085900
Ledus.S5	AUGUSTUS	transcript	9076791	9078423	.	+	.	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	start_codon	9076791	9076793	.	+	0	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	CDS	9076791	9077033	0.54	+	0	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	exon	9076791	9077033	.	+	.	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	intron	9077034	9077123	.	+	.	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	CDS	9077124	9077174	1	+	0	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	exon	9077124	9077174	.	+	.	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	intron	9077175	9077261	.	+	.	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	CDS	9077262	9077474	1	+	0	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	exon	9077262	9077474	.	+	.	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	intron	9077475	9077704	.	+	.	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	CDS	9077705	9077873	0.89	+	0	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	exon	9077705	9077873	.	+	.	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	intron	9077874	9078056	.	+	.	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	CDS	9078057	9078097	0.96	+	2	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	exon	9078057	9078097	.	+	.	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	intron	9078098	9078261	.	+	.	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	CDS	9078262	9078423	0.71	+	0	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	exon	9078262	9078423	.	+	.	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
Ledus.S5	AUGUSTUS	stop_codon	9078424	9078426	.	+	0	transcript_id "Ledus.S5G085900.t1"; gene_id "Ledus.S5G085900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7657.t1 is derived from g12328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4839726	4840608	.	-	.	Ledus.S5G043500
Ledus.S5	AUGUSTUS	transcript	4839726	4840608	.	-	.	transcript_id "Ledus.S5G043500.t1"; gene_id "Ledus.S5G043500"
Ledus.S5	AUGUSTUS	stop_codon	4839723	4839725	.	-	0	transcript_id "Ledus.S5G043500.t1"; gene_id "Ledus.S5G043500"
Ledus.S5	AUGUSTUS	CDS	4839726	4839924	0.91	-	1	transcript_id "Ledus.S5G043500.t1"; gene_id "Ledus.S5G043500"
Ledus.S5	AUGUSTUS	exon	4839726	4839924	.	-	.	transcript_id "Ledus.S5G043500.t1"; gene_id "Ledus.S5G043500"
Ledus.S5	AUGUSTUS	intron	4839925	4840054	.	-	.	transcript_id "Ledus.S5G043500.t1"; gene_id "Ledus.S5G043500"
Ledus.S5	AUGUSTUS	CDS	4840055	4840158	1	-	0	transcript_id "Ledus.S5G043500.t1"; gene_id "Ledus.S5G043500"
Ledus.S5	AUGUSTUS	exon	4840055	4840158	.	-	.	transcript_id "Ledus.S5G043500.t1"; gene_id "Ledus.S5G043500"
Ledus.S5	AUGUSTUS	intron	4840159	4840329	.	-	.	transcript_id "Ledus.S5G043500.t1"; gene_id "Ledus.S5G043500"
Ledus.S5	AUGUSTUS	CDS	4840330	4840608	0.5	-	0	transcript_id "Ledus.S5G043500.t1"; gene_id "Ledus.S5G043500"
Ledus.S5	AUGUSTUS	exon	4840330	4840608	.	-	.	transcript_id "Ledus.S5G043500.t1"; gene_id "Ledus.S5G043500"
Ledus.S5	AUGUSTUS	start_codon	4840606	4840608	.	-	0	transcript_id "Ledus.S5G043500.t1"; gene_id "Ledus.S5G043500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg570.t1 is derived from g7431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3400122	3401769	.	-	.	Ledus.S2G045200
Ledus.S2	AUGUSTUS	transcript	3400122	3401769	.	-	.	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	stop_codon	3400119	3400121	.	-	0	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	CDS	3400122	3400144	0.96	-	2	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	exon	3400122	3400144	.	-	.	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	intron	3400145	3400248	.	-	.	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	CDS	3400249	3400462	0.7	-	0	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	exon	3400249	3400462	.	-	.	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	intron	3400463	3400557	.	-	.	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	CDS	3400558	3400689	0.99	-	0	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	exon	3400558	3400689	.	-	.	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	intron	3400690	3400806	.	-	.	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	CDS	3400807	3400969	0.98	-	1	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	exon	3400807	3400969	.	-	.	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	intron	3400970	3401123	.	-	.	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	CDS	3401124	3401240	0.97	-	1	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	exon	3401124	3401240	.	-	.	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	intron	3401241	3401323	.	-	.	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	CDS	3401324	3401769	0.96	-	0	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	exon	3401324	3401769	.	-	.	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
Ledus.S2	AUGUSTUS	start_codon	3401767	3401769	.	-	0	transcript_id "Ledus.S2G045200.t1"; gene_id "Ledus.S2G045200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7509.t1 is derived from g12180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3514909	3515373	.	-	.	Ledus.S5G028700
Ledus.S5	AUGUSTUS	transcript	3514909	3515373	.	-	.	transcript_id "Ledus.S5G028700.t1"; gene_id "Ledus.S5G028700"
Ledus.S5	AUGUSTUS	stop_codon	3514906	3514908	.	-	0	transcript_id "Ledus.S5G028700.t1"; gene_id "Ledus.S5G028700"
Ledus.S5	AUGUSTUS	CDS	3514909	3515373	0.61	-	0	transcript_id "Ledus.S5G028700.t1"; gene_id "Ledus.S5G028700"
Ledus.S5	AUGUSTUS	exon	3514909	3515373	.	-	.	transcript_id "Ledus.S5G028700.t1"; gene_id "Ledus.S5G028700"
Ledus.S5	AUGUSTUS	start_codon	3515371	3515373	.	-	0	transcript_id "Ledus.S5G028700.t1"; gene_id "Ledus.S5G028700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4769.t1 is derived from g2207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19670904	19672979	.	-	.	Ledus.S1G219000
Ledus.S1	AUGUSTUS	transcript	19670904	19672979	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	stop_codon	19670901	19670903	.	-	0	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	CDS	19670904	19671416	1	-	0	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	exon	19670904	19671416	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	intron	19671417	19671520	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	CDS	19671521	19671760	0.98	-	0	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	exon	19671521	19671760	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	intron	19671761	19671838	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	CDS	19671839	19671949	1	-	0	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	exon	19671839	19671949	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	intron	19671950	19672060	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	CDS	19672061	19672115	0.98	-	1	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	exon	19672061	19672115	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	intron	19672116	19672230	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	CDS	19672231	19672367	1	-	0	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	exon	19672231	19672367	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	intron	19672368	19672508	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	CDS	19672509	19672706	1	-	0	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	exon	19672509	19672706	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	intron	19672707	19672778	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	CDS	19672779	19672979	1	-	0	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	exon	19672779	19672979	.	-	.	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
Ledus.S1	AUGUSTUS	start_codon	19672977	19672979	.	-	0	transcript_id "Ledus.S1G219000.t1"; gene_id "Ledus.S1G219000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8807.t1 is derived from g9837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2073257	2075797	.	+	.	Ledus.S3G028400
Ledus.S3	AUGUSTUS	transcript	2073257	2075797	.	+	.	transcript_id "Ledus.S3G028400.t1"; gene_id "Ledus.S3G028400"
Ledus.S3	AUGUSTUS	start_codon	2073257	2073259	.	+	0	transcript_id "Ledus.S3G028400.t1"; gene_id "Ledus.S3G028400"
Ledus.S3	AUGUSTUS	CDS	2073257	2075797	0.99	+	0	transcript_id "Ledus.S3G028400.t1"; gene_id "Ledus.S3G028400"
Ledus.S3	AUGUSTUS	exon	2073257	2075797	.	+	.	transcript_id "Ledus.S3G028400.t1"; gene_id "Ledus.S3G028400"
Ledus.S3	AUGUSTUS	stop_codon	2075798	2075800	.	+	0	transcript_id "Ledus.S3G028400.t1"; gene_id "Ledus.S3G028400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7268.t1 is derived from g11939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	649404	651326	.	-	.	Ledus.S5G004600
Ledus.S5	AUGUSTUS	transcript	649404	651326	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	stop_codon	649401	649403	.	-	0	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	CDS	649404	649577	1	-	0	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	exon	649404	649577	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	intron	649578	649678	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	CDS	649679	649819	1	-	0	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	exon	649679	649819	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	intron	649820	649898	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	CDS	649899	649994	1	-	0	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	exon	649899	649994	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	intron	649995	650072	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	CDS	650073	650165	1	-	0	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	exon	650073	650165	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	intron	650166	650245	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	CDS	650246	650440	1	-	0	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	exon	650246	650440	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	intron	650441	650513	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	CDS	650514	650612	1	-	0	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	exon	650514	650612	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	intron	650613	650712	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	CDS	650713	650945	0.84	-	2	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	exon	650713	650945	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	intron	650946	651021	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	CDS	651022	651112	0.8	-	0	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	exon	651022	651112	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	intron	651113	651212	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	CDS	651213	651326	0.8	-	0	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	exon	651213	651326	.	-	.	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
Ledus.S5	AUGUSTUS	start_codon	651324	651326	.	-	0	transcript_id "Ledus.S5G004600.t1"; gene_id "Ledus.S5G004600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6663.t1 is derived from g4106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32950981	32952024	.	+	.	Ledus.S1G408400
Ledus.S1	AUGUSTUS	transcript	32950981	32952024	.	+	.	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	start_codon	32950981	32950983	.	+	0	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	CDS	32950981	32951122	1	+	0	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	exon	32950981	32951122	.	+	.	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	intron	32951123	32951228	.	+	.	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	CDS	32951229	32951297	1	+	2	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	exon	32951229	32951297	.	+	.	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	intron	32951298	32951384	.	+	.	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	CDS	32951385	32951491	1	+	2	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	exon	32951385	32951491	.	+	.	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	intron	32951492	32951623	.	+	.	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	CDS	32951624	32951801	0.91	+	0	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	exon	32951624	32951801	.	+	.	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	intron	32951802	32951884	.	+	.	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	CDS	32951885	32952024	0.91	+	2	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	exon	32951885	32952024	.	+	.	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
Ledus.S1	AUGUSTUS	stop_codon	32952025	32952027	.	+	0	transcript_id "Ledus.S1G408400.t1"; gene_id "Ledus.S1G408400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6120.t1 is derived from g3563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29012670	29013219	.	+	.	Ledus.S1G354100
Ledus.S1	AUGUSTUS	transcript	29012670	29013219	.	+	.	transcript_id "Ledus.S1G354100.t1"; gene_id "Ledus.S1G354100"
Ledus.S1	AUGUSTUS	start_codon	29012670	29012672	.	+	0	transcript_id "Ledus.S1G354100.t1"; gene_id "Ledus.S1G354100"
Ledus.S1	AUGUSTUS	CDS	29012670	29012798	0.35	+	0	transcript_id "Ledus.S1G354100.t1"; gene_id "Ledus.S1G354100"
Ledus.S1	AUGUSTUS	exon	29012670	29012798	.	+	.	transcript_id "Ledus.S1G354100.t1"; gene_id "Ledus.S1G354100"
Ledus.S1	AUGUSTUS	intron	29012799	29013141	.	+	.	transcript_id "Ledus.S1G354100.t1"; gene_id "Ledus.S1G354100"
Ledus.S1	AUGUSTUS	CDS	29013142	29013219	0.75	+	0	transcript_id "Ledus.S1G354100.t1"; gene_id "Ledus.S1G354100"
Ledus.S1	AUGUSTUS	exon	29013142	29013219	.	+	.	transcript_id "Ledus.S1G354100.t1"; gene_id "Ledus.S1G354100"
Ledus.S1	AUGUSTUS	stop_codon	29013220	29013222	.	+	0	transcript_id "Ledus.S1G354100.t1"; gene_id "Ledus.S1G354100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11893.t1 is derived from g5512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7570996	7571751	.	-	.	Ledus.S4G104900
Ledus.S4	AUGUSTUS	transcript	7570996	7571751	.	-	.	transcript_id "Ledus.S4G104900.t1"; gene_id "Ledus.S4G104900"
Ledus.S4	AUGUSTUS	stop_codon	7570993	7570995	.	-	0	transcript_id "Ledus.S4G104900.t1"; gene_id "Ledus.S4G104900"
Ledus.S4	AUGUSTUS	CDS	7570996	7571751	1	-	0	transcript_id "Ledus.S4G104900.t1"; gene_id "Ledus.S4G104900"
Ledus.S4	AUGUSTUS	exon	7570996	7571751	.	-	.	transcript_id "Ledus.S4G104900.t1"; gene_id "Ledus.S4G104900"
Ledus.S4	AUGUSTUS	start_codon	7571749	7571751	.	-	0	transcript_id "Ledus.S4G104900.t1"; gene_id "Ledus.S4G104900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10614.t1 is derived from g11644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16455467	16455936	.	+	.	Ledus.S3G209100
Ledus.S3	AUGUSTUS	transcript	16455467	16455936	.	+	.	transcript_id "Ledus.S3G209100.t1"; gene_id "Ledus.S3G209100"
Ledus.S3	AUGUSTUS	start_codon	16455467	16455469	.	+	0	transcript_id "Ledus.S3G209100.t1"; gene_id "Ledus.S3G209100"
Ledus.S3	AUGUSTUS	CDS	16455467	16455484	0.98	+	0	transcript_id "Ledus.S3G209100.t1"; gene_id "Ledus.S3G209100"
Ledus.S3	AUGUSTUS	exon	16455467	16455484	.	+	.	transcript_id "Ledus.S3G209100.t1"; gene_id "Ledus.S3G209100"
Ledus.S3	AUGUSTUS	intron	16455485	16455574	.	+	.	transcript_id "Ledus.S3G209100.t1"; gene_id "Ledus.S3G209100"
Ledus.S3	AUGUSTUS	CDS	16455575	16455640	1	+	0	transcript_id "Ledus.S3G209100.t1"; gene_id "Ledus.S3G209100"
Ledus.S3	AUGUSTUS	exon	16455575	16455640	.	+	.	transcript_id "Ledus.S3G209100.t1"; gene_id "Ledus.S3G209100"
Ledus.S3	AUGUSTUS	intron	16455641	16455720	.	+	.	transcript_id "Ledus.S3G209100.t1"; gene_id "Ledus.S3G209100"
Ledus.S3	AUGUSTUS	CDS	16455721	16455936	0.83	+	0	transcript_id "Ledus.S3G209100.t1"; gene_id "Ledus.S3G209100"
Ledus.S3	AUGUSTUS	exon	16455721	16455936	.	+	.	transcript_id "Ledus.S3G209100.t1"; gene_id "Ledus.S3G209100"
Ledus.S3	AUGUSTUS	stop_codon	16455937	16455939	.	+	0	transcript_id "Ledus.S3G209100.t1"; gene_id "Ledus.S3G209100"
# This transcript jg843.t2 is derived from g7703.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg843.t3 is derived from g7703.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg844.t1 is derived from g7705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5631612	5636193	.	+	.	Ledus.S2G072600
Ledus.S2	AUGUSTUS	transcript	5631612	5636193	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	start_codon	5631612	5631614	.	+	0	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5631612	5631926	0.86	+	0	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5631612	5631926	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5631927	5632029	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5632030	5632079	1	+	0	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5632030	5632079	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5632080	5632152	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5632153	5632245	1	+	1	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5632153	5632245	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5632246	5632346	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5632347	5632430	1	+	1	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5632347	5632430	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5632431	5632515	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5632516	5632581	1	+	1	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5632516	5632581	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5632582	5632661	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5632662	5632750	1	+	1	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5632662	5632750	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5632751	5632826	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5632827	5632939	0.97	+	2	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5632827	5632939	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5632940	5633067	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5633068	5633201	0.97	+	0	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5633068	5633201	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5633202	5633288	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5633289	5633416	1	+	1	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5633289	5633416	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5633417	5633504	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5633505	5633556	1	+	2	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5633505	5633556	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5633557	5633636	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5633637	5633778	1	+	1	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5633637	5633778	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5633779	5633861	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5633862	5634055	1	+	0	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5633862	5634055	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5634056	5634151	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5634152	5634320	1	+	1	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5634152	5634320	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5634321	5634413	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5634414	5635365	1	+	0	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5634414	5635365	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5635366	5635458	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5635459	5635801	1	+	2	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5635459	5635801	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	intron	5635802	5635886	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	CDS	5635887	5636193	1	+	1	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	exon	5635887	5636193	.	+	.	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
Ledus.S2	AUGUSTUS	stop_codon	5636194	5636196	.	+	0	transcript_id "Ledus.S2G072600.t1"; gene_id "Ledus.S2G072600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7038.t1 is derived from g6569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	954334	959250	.	-	.	Ledus.C7G009900
Ledus.C7	AUGUSTUS	transcript	954334	959250	.	-	.	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	stop_codon	954331	954333	.	-	0	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	CDS	954334	955013	0.98	-	2	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	exon	954334	955013	.	-	.	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	intron	955014	955113	.	-	.	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	CDS	955114	955261	1	-	0	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	exon	955114	955261	.	-	.	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	intron	955262	955400	.	-	.	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	CDS	955401	955501	1	-	2	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	exon	955401	955501	.	-	.	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	intron	955502	955626	.	-	.	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	CDS	955627	957199	0.94	-	0	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	exon	955627	957199	.	-	.	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	intron	957200	958064	.	-	.	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	CDS	958065	958840	0.99	-	2	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	exon	958065	958840	.	-	.	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	intron	958841	959036	.	-	.	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	CDS	959037	959250	1	-	0	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	exon	959037	959250	.	-	.	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
Ledus.C7	AUGUSTUS	start_codon	959248	959250	.	-	0	transcript_id "Ledus.C7G009900.t1"; gene_id "Ledus.C7G009900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10346.t1 is derived from g11376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14347124	14349473	.	-	.	Ledus.S3G182300
Ledus.S3	AUGUSTUS	transcript	14347124	14349473	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	stop_codon	14347121	14347123	.	-	0	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	CDS	14347124	14347359	0.96	-	2	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	exon	14347124	14347359	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	intron	14347360	14347484	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	CDS	14347485	14347629	1	-	0	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	exon	14347485	14347629	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	intron	14347630	14347751	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	CDS	14347752	14347881	1	-	1	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	exon	14347752	14347881	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	intron	14347882	14348019	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	CDS	14348020	14348114	1	-	0	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	exon	14348020	14348114	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	intron	14348115	14348248	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	CDS	14348249	14348390	1	-	1	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	exon	14348249	14348390	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	intron	14348391	14348478	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	CDS	14348479	14348570	1	-	0	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	exon	14348479	14348570	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	intron	14348571	14348706	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	CDS	14348707	14348814	1	-	0	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	exon	14348707	14348814	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	intron	14348815	14348970	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	CDS	14348971	14349084	1	-	0	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	exon	14348971	14349084	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	intron	14349085	14349188	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	CDS	14349189	14349310	0.98	-	2	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	exon	14349189	14349310	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	intron	14349311	14349406	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	CDS	14349407	14349473	0.99	-	0	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	exon	14349407	14349473	.	-	.	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
Ledus.S3	AUGUSTUS	start_codon	14349471	14349473	.	-	0	transcript_id "Ledus.S3G182300.t1"; gene_id "Ledus.S3G182300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6325.t1 is derived from g3768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30496633	30500021	.	+	.	Ledus.S1G374600
Ledus.S1	AUGUSTUS	transcript	30496633	30500021	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	start_codon	30496633	30496635	.	+	0	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	CDS	30496633	30496851	0.62	+	0	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	exon	30496633	30496851	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	intron	30496852	30497050	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	CDS	30497051	30497165	0.86	+	0	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	exon	30497051	30497165	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	intron	30497166	30497281	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	CDS	30497282	30497329	1	+	2	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	exon	30497282	30497329	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	intron	30497330	30497428	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	CDS	30497429	30497594	1	+	2	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	exon	30497429	30497594	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	intron	30497595	30497708	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	CDS	30497709	30497796	0.99	+	1	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	exon	30497709	30497796	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	intron	30497797	30497905	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	CDS	30497906	30497971	0.99	+	0	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	exon	30497906	30497971	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	intron	30497972	30498068	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	CDS	30498069	30498137	1	+	0	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	exon	30498069	30498137	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	intron	30498138	30498213	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	CDS	30498214	30498274	1	+	0	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	exon	30498214	30498274	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	intron	30498275	30498461	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	CDS	30498462	30499605	0.97	+	2	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	exon	30498462	30499605	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	intron	30499606	30499688	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	CDS	30499689	30499734	0.97	+	1	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	exon	30499689	30499734	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	intron	30499735	30499967	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	CDS	30499968	30500021	0.98	+	0	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	exon	30499968	30500021	.	+	.	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
Ledus.S1	AUGUSTUS	stop_codon	30500022	30500024	.	+	0	transcript_id "Ledus.S1G374600.t1"; gene_id "Ledus.S1G374600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4680.t1 is derived from g2118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18967692	18968721	.	+	.	Ledus.S1G210100
Ledus.S1	AUGUSTUS	transcript	18967692	18968721	.	+	.	transcript_id "Ledus.S1G210100.t1"; gene_id "Ledus.S1G210100"
Ledus.S1	AUGUSTUS	start_codon	18967692	18967694	.	+	0	transcript_id "Ledus.S1G210100.t1"; gene_id "Ledus.S1G210100"
Ledus.S1	AUGUSTUS	CDS	18967692	18967744	1	+	0	transcript_id "Ledus.S1G210100.t1"; gene_id "Ledus.S1G210100"
Ledus.S1	AUGUSTUS	exon	18967692	18967744	.	+	.	transcript_id "Ledus.S1G210100.t1"; gene_id "Ledus.S1G210100"
Ledus.S1	AUGUSTUS	intron	18967745	18968217	.	+	.	transcript_id "Ledus.S1G210100.t1"; gene_id "Ledus.S1G210100"
Ledus.S1	AUGUSTUS	CDS	18968218	18968278	1	+	1	transcript_id "Ledus.S1G210100.t1"; gene_id "Ledus.S1G210100"
Ledus.S1	AUGUSTUS	exon	18968218	18968278	.	+	.	transcript_id "Ledus.S1G210100.t1"; gene_id "Ledus.S1G210100"
Ledus.S1	AUGUSTUS	intron	18968279	18968553	.	+	.	transcript_id "Ledus.S1G210100.t1"; gene_id "Ledus.S1G210100"
Ledus.S1	AUGUSTUS	CDS	18968554	18968721	0.98	+	0	transcript_id "Ledus.S1G210100.t1"; gene_id "Ledus.S1G210100"
Ledus.S1	AUGUSTUS	exon	18968554	18968721	.	+	.	transcript_id "Ledus.S1G210100.t1"; gene_id "Ledus.S1G210100"
Ledus.S1	AUGUSTUS	stop_codon	18968722	18968724	.	+	0	transcript_id "Ledus.S1G210100.t1"; gene_id "Ledus.S1G210100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3170.t1 is derived from g605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6556298	6558686	.	-	.	Ledus.S1G059100
Ledus.S1	AUGUSTUS	transcript	6556298	6558686	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	stop_codon	6556295	6556297	.	-	0	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	CDS	6556298	6556300	1	-	0	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	exon	6556298	6556300	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	intron	6556301	6556472	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	CDS	6556473	6556531	1	-	2	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	exon	6556473	6556531	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	intron	6556532	6556719	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	CDS	6556720	6556837	1	-	0	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	exon	6556720	6556837	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	intron	6556838	6557060	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	CDS	6557061	6557135	0.59	-	0	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	exon	6557061	6557135	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	intron	6557136	6557316	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	CDS	6557317	6557357	0.75	-	2	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	exon	6557317	6557357	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	intron	6557358	6557443	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	CDS	6557444	6557534	0.74	-	0	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	exon	6557444	6557534	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	intron	6557535	6557608	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	CDS	6557609	6557770	1	-	0	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	exon	6557609	6557770	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	intron	6557771	6557882	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	CDS	6557883	6557955	0.72	-	1	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	exon	6557883	6557955	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	intron	6557956	6558032	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	CDS	6558033	6558061	0.75	-	0	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	exon	6558033	6558061	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	intron	6558062	6558148	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	CDS	6558149	6558402	0.98	-	2	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	exon	6558149	6558402	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	intron	6558403	6558493	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	CDS	6558494	6558686	1	-	0	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	exon	6558494	6558686	.	-	.	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
Ledus.S1	AUGUSTUS	start_codon	6558684	6558686	.	-	0	transcript_id "Ledus.S1G059100.t1"; gene_id "Ledus.S1G059100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5690.t1 is derived from g3129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25921272	25921559	.	-	.	Ledus.S1G311100
Ledus.S1	AUGUSTUS	transcript	25921272	25921559	.	-	.	transcript_id "Ledus.S1G311100.t1"; gene_id "Ledus.S1G311100"
Ledus.S1	AUGUSTUS	stop_codon	25921269	25921271	.	-	0	transcript_id "Ledus.S1G311100.t1"; gene_id "Ledus.S1G311100"
Ledus.S1	AUGUSTUS	CDS	25921272	25921559	0.62	-	0	transcript_id "Ledus.S1G311100.t1"; gene_id "Ledus.S1G311100"
Ledus.S1	AUGUSTUS	exon	25921272	25921559	.	-	.	transcript_id "Ledus.S1G311100.t1"; gene_id "Ledus.S1G311100"
Ledus.S1	AUGUSTUS	start_codon	25921557	25921559	.	-	0	transcript_id "Ledus.S1G311100.t1"; gene_id "Ledus.S1G311100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3101.t1 is derived from g536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5846290	5847408	.	+	.	Ledus.S1G052200
Ledus.S1	AUGUSTUS	transcript	5846290	5847408	.	+	.	transcript_id "Ledus.S1G052200.t1"; gene_id "Ledus.S1G052200"
Ledus.S1	AUGUSTUS	start_codon	5846290	5846292	.	+	0	transcript_id "Ledus.S1G052200.t1"; gene_id "Ledus.S1G052200"
Ledus.S1	AUGUSTUS	CDS	5846290	5847408	0.99	+	0	transcript_id "Ledus.S1G052200.t1"; gene_id "Ledus.S1G052200"
Ledus.S1	AUGUSTUS	exon	5846290	5847408	.	+	.	transcript_id "Ledus.S1G052200.t1"; gene_id "Ledus.S1G052200"
Ledus.S1	AUGUSTUS	stop_codon	5847409	5847411	.	+	0	transcript_id "Ledus.S1G052200.t1"; gene_id "Ledus.S1G052200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8258.t1 is derived from g12929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10263135	10263476	.	-	.	Ledus.S5G103600
Ledus.S5	AUGUSTUS	transcript	10263135	10263476	.	-	.	transcript_id "Ledus.S5G103600.t1"; gene_id "Ledus.S5G103600"
Ledus.S5	AUGUSTUS	stop_codon	10263132	10263134	.	-	0	transcript_id "Ledus.S5G103600.t1"; gene_id "Ledus.S5G103600"
Ledus.S5	AUGUSTUS	CDS	10263135	10263476	0.84	-	0	transcript_id "Ledus.S5G103600.t1"; gene_id "Ledus.S5G103600"
Ledus.S5	AUGUSTUS	exon	10263135	10263476	.	-	.	transcript_id "Ledus.S5G103600.t1"; gene_id "Ledus.S5G103600"
Ledus.S5	AUGUSTUS	start_codon	10263474	10263476	.	-	0	transcript_id "Ledus.S5G103600.t1"; gene_id "Ledus.S5G103600"
# This transcript jg9993.t2 is derived from g11023.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9994.t1 is derived from g11024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11768384	11770190	.	+	.	Ledus.S3G147100
Ledus.S3	AUGUSTUS	transcript	11768384	11770190	.	+	.	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	start_codon	11768384	11768386	.	+	0	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	CDS	11768384	11768440	0.35	+	0	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	exon	11768384	11768440	.	+	.	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	intron	11768441	11768513	.	+	.	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	CDS	11768514	11768731	0.83	+	0	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	exon	11768514	11768731	.	+	.	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	intron	11768732	11768843	.	+	.	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	CDS	11768844	11769082	0.96	+	1	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	exon	11768844	11769082	.	+	.	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	intron	11769083	11769326	.	+	.	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	CDS	11769327	11769928	0.96	+	2	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	exon	11769327	11769928	.	+	.	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	intron	11769929	11769995	.	+	.	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	CDS	11769996	11770190	0.81	+	0	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	exon	11769996	11770190	.	+	.	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
Ledus.S3	AUGUSTUS	stop_codon	11770191	11770193	.	+	0	transcript_id "Ledus.S3G147100.t1"; gene_id "Ledus.S3G147100"
# This transcript jg8255.t2 is derived from g12926.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8256.t1 is derived from g12927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10196607	10198175	.	+	.	Ledus.S5G103400
Ledus.S5	AUGUSTUS	transcript	10196607	10198175	.	+	.	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	start_codon	10196607	10196609	.	+	0	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	CDS	10196607	10196703	0.56	+	0	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	exon	10196607	10196703	.	+	.	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	intron	10196704	10196810	.	+	.	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	CDS	10196811	10196861	0.63	+	2	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	exon	10196811	10196861	.	+	.	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	intron	10196862	10196953	.	+	.	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	CDS	10196954	10197354	1	+	2	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	exon	10196954	10197354	.	+	.	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	intron	10197355	10197436	.	+	.	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	CDS	10197437	10197861	1	+	0	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	exon	10197437	10197861	.	+	.	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	intron	10197862	10197943	.	+	.	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	CDS	10197944	10198175	1	+	1	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	exon	10197944	10198175	.	+	.	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
Ledus.S5	AUGUSTUS	stop_codon	10198176	10198178	.	+	0	transcript_id "Ledus.S5G103400.t1"; gene_id "Ledus.S5G103400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7011.t1 is derived from g6542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	805031	806667	.	+	.	Ledus.C7G007200
Ledus.C7	AUGUSTUS	transcript	805031	806667	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	start_codon	805031	805033	.	+	0	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	CDS	805031	805321	0.84	+	0	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	exon	805031	805321	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	intron	805322	805428	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	CDS	805429	805518	0.99	+	0	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	exon	805429	805518	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	intron	805519	805604	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	CDS	805605	805685	0.77	+	0	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	exon	805605	805685	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	intron	805686	805788	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	CDS	805789	805920	1	+	0	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	exon	805789	805920	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	intron	805921	806013	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	CDS	806014	806232	1	+	0	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	exon	806014	806232	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	intron	806233	806330	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	CDS	806331	806423	1	+	0	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	exon	806331	806423	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	intron	806424	806502	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	CDS	806503	806667	1	+	0	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	exon	806503	806667	.	+	.	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
Ledus.C7	AUGUSTUS	stop_codon	806668	806670	.	+	0	transcript_id "Ledus.C7G007200.t1"; gene_id "Ledus.C7G007200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10191.t1 is derived from g11221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13503301	13506579	.	+	.	Ledus.S3G166800
Ledus.S3	AUGUSTUS	transcript	13503301	13506579	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	start_codon	13503301	13503303	.	+	0	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13503301	13503318	0.7	+	0	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13503301	13503318	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	intron	13503319	13503497	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13503498	13503506	0.85	+	0	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13503498	13503506	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	intron	13503507	13503717	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13503718	13503764	1	+	0	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13503718	13503764	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	intron	13503765	13504008	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13504009	13504065	1	+	1	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13504009	13504065	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	intron	13504066	13504235	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13504236	13504308	1	+	1	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13504236	13504308	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	intron	13504309	13504389	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13504390	13504445	1	+	0	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13504390	13504445	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	intron	13504446	13504638	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13504639	13504833	0.98	+	1	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13504639	13504833	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	intron	13504834	13504957	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13504958	13505088	0.99	+	1	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13504958	13505088	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	intron	13505089	13505179	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13505180	13505277	1	+	2	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13505180	13505277	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	intron	13505278	13505420	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13505421	13505563	1	+	0	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13505421	13505563	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	intron	13505564	13505755	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13505756	13506018	1	+	1	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13505756	13506018	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	intron	13506019	13506100	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13506101	13506243	1	+	2	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13506101	13506243	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	intron	13506244	13506336	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	CDS	13506337	13506579	0.98	+	0	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	exon	13506337	13506579	.	+	.	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
Ledus.S3	AUGUSTUS	stop_codon	13506580	13506582	.	+	0	transcript_id "Ledus.S3G166800.t1"; gene_id "Ledus.S3G166800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10435.t1 is derived from g11465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15115783	15116505	.	+	.	Ledus.S3G191200
Ledus.S3	AUGUSTUS	transcript	15115783	15116505	.	+	.	transcript_id "Ledus.S3G191200.t1"; gene_id "Ledus.S3G191200"
Ledus.S3	AUGUSTUS	start_codon	15115783	15115785	.	+	0	transcript_id "Ledus.S3G191200.t1"; gene_id "Ledus.S3G191200"
Ledus.S3	AUGUSTUS	CDS	15115783	15116505	0.99	+	0	transcript_id "Ledus.S3G191200.t1"; gene_id "Ledus.S3G191200"
Ledus.S3	AUGUSTUS	exon	15115783	15116505	.	+	.	transcript_id "Ledus.S3G191200.t1"; gene_id "Ledus.S3G191200"
Ledus.S3	AUGUSTUS	stop_codon	15116506	15116508	.	+	0	transcript_id "Ledus.S3G191200.t1"; gene_id "Ledus.S3G191200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9982.t1 is derived from g11012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11732715	11734067	.	-	.	Ledus.S3G145900
Ledus.S3	AUGUSTUS	transcript	11732715	11734067	.	-	.	transcript_id "Ledus.S3G145900.t1"; gene_id "Ledus.S3G145900"
Ledus.S3	AUGUSTUS	stop_codon	11732712	11732714	.	-	0	transcript_id "Ledus.S3G145900.t1"; gene_id "Ledus.S3G145900"
Ledus.S3	AUGUSTUS	CDS	11732715	11734067	0.63	-	0	transcript_id "Ledus.S3G145900.t1"; gene_id "Ledus.S3G145900"
Ledus.S3	AUGUSTUS	exon	11732715	11734067	.	-	.	transcript_id "Ledus.S3G145900.t1"; gene_id "Ledus.S3G145900"
Ledus.S3	AUGUSTUS	start_codon	11734065	11734067	.	-	0	transcript_id "Ledus.S3G145900.t1"; gene_id "Ledus.S3G145900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1026.t1 is derived from g7887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6825952	6830715	.	+	.	Ledus.S2G090800
Ledus.S2	AUGUSTUS	transcript	6825952	6830715	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	start_codon	6825952	6825954	.	+	0	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	CDS	6825952	6826215	0.98	+	0	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	exon	6825952	6826215	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	intron	6826216	6826438	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	CDS	6826439	6826616	1	+	0	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	exon	6826439	6826616	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	intron	6826617	6826762	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	CDS	6826763	6826991	1	+	2	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	exon	6826763	6826991	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	intron	6826992	6827265	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	CDS	6827266	6827405	1	+	1	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	exon	6827266	6827405	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	intron	6827406	6827550	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	CDS	6827551	6827840	1	+	2	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	exon	6827551	6827840	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	intron	6827841	6827932	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	CDS	6827933	6828145	1	+	0	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	exon	6827933	6828145	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	intron	6828146	6828296	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	CDS	6828297	6828773	0.89	+	0	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	exon	6828297	6828773	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	intron	6828774	6828870	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	CDS	6828871	6829545	0.96	+	0	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	exon	6828871	6829545	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	intron	6829546	6829641	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	CDS	6829642	6829753	1	+	0	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	exon	6829642	6829753	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	intron	6829754	6829839	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	CDS	6829840	6830372	1	+	2	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	exon	6829840	6830372	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	intron	6830373	6830454	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	CDS	6830455	6830715	1	+	0	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	exon	6830455	6830715	.	+	.	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
Ledus.S2	AUGUSTUS	stop_codon	6830716	6830718	.	+	0	transcript_id "Ledus.S2G090800.t1"; gene_id "Ledus.S2G090800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7469.t1 is derived from g12140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2991986	2992195	.	-	.	Ledus.S5G024700
Ledus.S5	AUGUSTUS	transcript	2991986	2992195	.	-	.	transcript_id "Ledus.S5G024700.t1"; gene_id "Ledus.S5G024700"
Ledus.S5	AUGUSTUS	stop_codon	2991983	2991985	.	-	0	transcript_id "Ledus.S5G024700.t1"; gene_id "Ledus.S5G024700"
Ledus.S5	AUGUSTUS	CDS	2991986	2992195	0.97	-	0	transcript_id "Ledus.S5G024700.t1"; gene_id "Ledus.S5G024700"
Ledus.S5	AUGUSTUS	exon	2991986	2992195	.	-	.	transcript_id "Ledus.S5G024700.t1"; gene_id "Ledus.S5G024700"
Ledus.S5	AUGUSTUS	start_codon	2992193	2992195	.	-	0	transcript_id "Ledus.S5G024700.t1"; gene_id "Ledus.S5G024700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3813.t1 is derived from g1249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12575619	12576050	.	-	.	Ledus.S1G123400
Ledus.S1	AUGUSTUS	transcript	12575619	12576050	.	-	.	transcript_id "Ledus.S1G123400.t1"; gene_id "Ledus.S1G123400"
Ledus.S1	AUGUSTUS	stop_codon	12575616	12575618	.	-	0	transcript_id "Ledus.S1G123400.t1"; gene_id "Ledus.S1G123400"
Ledus.S1	AUGUSTUS	CDS	12575619	12576050	0.87	-	0	transcript_id "Ledus.S1G123400.t1"; gene_id "Ledus.S1G123400"
Ledus.S1	AUGUSTUS	exon	12575619	12576050	.	-	.	transcript_id "Ledus.S1G123400.t1"; gene_id "Ledus.S1G123400"
Ledus.S1	AUGUSTUS	start_codon	12576048	12576050	.	-	0	transcript_id "Ledus.S1G123400.t1"; gene_id "Ledus.S1G123400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5235.t1 is derived from g2674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22621284	22622463	.	-	.	Ledus.S1G265600
Ledus.S1	AUGUSTUS	transcript	22621284	22622463	.	-	.	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	stop_codon	22621281	22621283	.	-	0	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	CDS	22621284	22621315	0.61	-	2	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	exon	22621284	22621315	.	-	.	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	intron	22621316	22621403	.	-	.	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	CDS	22621404	22621475	0.94	-	2	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	exon	22621404	22621475	.	-	.	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	intron	22621476	22621590	.	-	.	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	CDS	22621591	22621648	0.98	-	0	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	exon	22621591	22621648	.	-	.	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	intron	22621649	22621746	.	-	.	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	CDS	22621747	22622463	0.9	-	0	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	exon	22621747	22622463	.	-	.	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
Ledus.S1	AUGUSTUS	start_codon	22622461	22622463	.	-	0	transcript_id "Ledus.S1G265600.t1"; gene_id "Ledus.S1G265600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2988.t1 is derived from g423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5173165	5173446	.	-	.	Ledus.S1G040900
Ledus.S1	AUGUSTUS	transcript	5173165	5173446	.	-	.	transcript_id "Ledus.S1G040900.t1"; gene_id "Ledus.S1G040900"
Ledus.S1	AUGUSTUS	stop_codon	5173162	5173164	.	-	0	transcript_id "Ledus.S1G040900.t1"; gene_id "Ledus.S1G040900"
Ledus.S1	AUGUSTUS	CDS	5173165	5173446	0.54	-	0	transcript_id "Ledus.S1G040900.t1"; gene_id "Ledus.S1G040900"
Ledus.S1	AUGUSTUS	exon	5173165	5173446	.	-	.	transcript_id "Ledus.S1G040900.t1"; gene_id "Ledus.S1G040900"
Ledus.S1	AUGUSTUS	start_codon	5173444	5173446	.	-	0	transcript_id "Ledus.S1G040900.t1"; gene_id "Ledus.S1G040900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8661.t1 is derived from g9691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1191514	1192143	.	-	.	Ledus.S3G013800
Ledus.S3	AUGUSTUS	transcript	1191514	1192143	.	-	.	transcript_id "Ledus.S3G013800.t1"; gene_id "Ledus.S3G013800"
Ledus.S3	AUGUSTUS	stop_codon	1191511	1191513	.	-	0	transcript_id "Ledus.S3G013800.t1"; gene_id "Ledus.S3G013800"
Ledus.S3	AUGUSTUS	CDS	1191514	1192143	0.99	-	0	transcript_id "Ledus.S3G013800.t1"; gene_id "Ledus.S3G013800"
Ledus.S3	AUGUSTUS	exon	1191514	1192143	.	-	.	transcript_id "Ledus.S3G013800.t1"; gene_id "Ledus.S3G013800"
Ledus.S3	AUGUSTUS	start_codon	1192141	1192143	.	-	0	transcript_id "Ledus.S3G013800.t1"; gene_id "Ledus.S3G013800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11534.t1 is derived from g5152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5152348	5154471	.	+	.	Ledus.S4G069000
Ledus.S4	AUGUSTUS	transcript	5152348	5154471	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	start_codon	5152348	5152350	.	+	0	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	CDS	5152348	5152488	0.84	+	0	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	exon	5152348	5152488	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	intron	5152489	5152729	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	CDS	5152730	5152991	1	+	0	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	exon	5152730	5152991	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	intron	5152992	5153082	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	CDS	5153083	5153175	1	+	2	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	exon	5153083	5153175	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	intron	5153176	5153258	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	CDS	5153259	5153341	0.44	+	2	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	exon	5153259	5153341	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	intron	5153342	5153481	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	CDS	5153482	5153801	0.46	+	0	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	exon	5153482	5153801	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	intron	5153802	5153875	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	CDS	5153876	5154004	1	+	1	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	exon	5153876	5154004	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	intron	5154005	5154099	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	CDS	5154100	5154174	1	+	1	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	exon	5154100	5154174	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	intron	5154175	5154251	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	CDS	5154252	5154471	1	+	1	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	exon	5154252	5154471	.	+	.	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
Ledus.S4	AUGUSTUS	stop_codon	5154472	5154474	.	+	0	transcript_id "Ledus.S4G069000.t1"; gene_id "Ledus.S4G069000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8005.t1 is derived from g12676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8435088	8435375	.	+	.	Ledus.S5G078300
Ledus.S5	AUGUSTUS	transcript	8435088	8435375	.	+	.	transcript_id "Ledus.S5G078300.t1"; gene_id "Ledus.S5G078300"
Ledus.S5	AUGUSTUS	start_codon	8435088	8435090	.	+	0	transcript_id "Ledus.S5G078300.t1"; gene_id "Ledus.S5G078300"
Ledus.S5	AUGUSTUS	CDS	8435088	8435375	0.92	+	0	transcript_id "Ledus.S5G078300.t1"; gene_id "Ledus.S5G078300"
Ledus.S5	AUGUSTUS	exon	8435088	8435375	.	+	.	transcript_id "Ledus.S5G078300.t1"; gene_id "Ledus.S5G078300"
Ledus.S5	AUGUSTUS	stop_codon	8435376	8435378	.	+	0	transcript_id "Ledus.S5G078300.t1"; gene_id "Ledus.S5G078300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5359.t1 is derived from g2798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23648564	23649415	.	+	.	Ledus.S1G278000
Ledus.S1	AUGUSTUS	transcript	23648564	23649415	.	+	.	transcript_id "Ledus.S1G278000.t1"; gene_id "Ledus.S1G278000"
Ledus.S1	AUGUSTUS	start_codon	23648564	23648566	.	+	0	transcript_id "Ledus.S1G278000.t1"; gene_id "Ledus.S1G278000"
Ledus.S1	AUGUSTUS	CDS	23648564	23649415	0.62	+	0	transcript_id "Ledus.S1G278000.t1"; gene_id "Ledus.S1G278000"
Ledus.S1	AUGUSTUS	exon	23648564	23649415	.	+	.	transcript_id "Ledus.S1G278000.t1"; gene_id "Ledus.S1G278000"
Ledus.S1	AUGUSTUS	stop_codon	23649416	23649418	.	+	0	transcript_id "Ledus.S1G278000.t1"; gene_id "Ledus.S1G278000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1725.t1 is derived from g8586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12157802	12158102	.	+	.	Ledus.S2G160700
Ledus.S2	AUGUSTUS	transcript	12157802	12158102	.	+	.	transcript_id "Ledus.S2G160700.t1"; gene_id "Ledus.S2G160700"
Ledus.S2	AUGUSTUS	start_codon	12157802	12157804	.	+	0	transcript_id "Ledus.S2G160700.t1"; gene_id "Ledus.S2G160700"
Ledus.S2	AUGUSTUS	CDS	12157802	12157890	0.38	+	0	transcript_id "Ledus.S2G160700.t1"; gene_id "Ledus.S2G160700"
Ledus.S2	AUGUSTUS	exon	12157802	12157890	.	+	.	transcript_id "Ledus.S2G160700.t1"; gene_id "Ledus.S2G160700"
Ledus.S2	AUGUSTUS	intron	12157891	12157987	.	+	.	transcript_id "Ledus.S2G160700.t1"; gene_id "Ledus.S2G160700"
Ledus.S2	AUGUSTUS	CDS	12157988	12158102	0.42	+	1	transcript_id "Ledus.S2G160700.t1"; gene_id "Ledus.S2G160700"
Ledus.S2	AUGUSTUS	exon	12157988	12158102	.	+	.	transcript_id "Ledus.S2G160700.t1"; gene_id "Ledus.S2G160700"
Ledus.S2	AUGUSTUS	stop_codon	12158103	12158105	.	+	0	transcript_id "Ledus.S2G160700.t1"; gene_id "Ledus.S2G160700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5362.t1 is derived from g2801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23661373	23662500	.	-	.	Ledus.S1G278300
Ledus.S1	AUGUSTUS	transcript	23661373	23662500	.	-	.	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	stop_codon	23661370	23661372	.	-	0	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	CDS	23661373	23661540	0.94	-	0	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	exon	23661373	23661540	.	-	.	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	intron	23661541	23661634	.	-	.	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	CDS	23661635	23661725	1	-	1	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	exon	23661635	23661725	.	-	.	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	intron	23661726	23661813	.	-	.	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	CDS	23661814	23661890	1	-	0	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	exon	23661814	23661890	.	-	.	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	intron	23661891	23661981	.	-	.	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	CDS	23661982	23662058	1	-	2	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	exon	23661982	23662058	.	-	.	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	intron	23662059	23662231	.	-	.	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	CDS	23662232	23662237	0.49	-	2	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	exon	23662232	23662237	.	-	.	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	intron	23662238	23662475	.	-	.	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	CDS	23662476	23662500	0.7	-	0	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	exon	23662476	23662500	.	-	.	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
Ledus.S1	AUGUSTUS	start_codon	23662498	23662500	.	-	0	transcript_id "Ledus.S1G278300.t1"; gene_id "Ledus.S1G278300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10217.t1 is derived from g11247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13636477	13640769	.	+	.	Ledus.S3G169400
Ledus.S3	AUGUSTUS	transcript	13636477	13640769	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	start_codon	13636477	13636479	.	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13636477	13637355	0.97	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13636477	13637355	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13637356	13637722	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13637723	13637785	1	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13637723	13637785	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13637786	13637949	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13637950	13638038	1	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13637950	13638038	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13638039	13638124	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13638125	13638185	1	+	1	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13638125	13638185	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13638186	13638363	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13638364	13638445	1	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13638364	13638445	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13638446	13638584	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13638585	13638721	1	+	2	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13638585	13638721	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13638722	13638806	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13638807	13638965	1	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13638807	13638965	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13638966	13639060	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13639061	13639140	1	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13639061	13639140	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13639141	13639421	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13639422	13639561	1	+	1	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13639422	13639561	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13639562	13639677	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13639678	13639709	1	+	2	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13639678	13639709	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13639710	13639794	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13639795	13639869	1	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13639795	13639869	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13639870	13639954	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13639955	13640027	1	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13639955	13640027	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13640028	13640123	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13640124	13640212	1	+	2	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13640124	13640212	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13640213	13640296	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13640297	13640341	1	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13640297	13640341	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13640342	13640428	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13640429	13640581	1	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13640429	13640581	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	intron	13640582	13640661	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	CDS	13640662	13640769	1	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	exon	13640662	13640769	.	+	.	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
Ledus.S3	AUGUSTUS	stop_codon	13640770	13640772	.	+	0	transcript_id "Ledus.S3G169400.t1"; gene_id "Ledus.S3G169400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13058.t1 is derived from g6868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4352832	4353086	.	-	.	Ledus.S6G012000
Ledus.S6	AUGUSTUS	transcript	4352832	4353086	.	-	.	transcript_id "Ledus.S6G012000.t1"; gene_id "Ledus.S6G012000"
Ledus.S6	AUGUSTUS	stop_codon	4352829	4352831	.	-	0	transcript_id "Ledus.S6G012000.t1"; gene_id "Ledus.S6G012000"
Ledus.S6	AUGUSTUS	CDS	4352832	4353086	1	-	0	transcript_id "Ledus.S6G012000.t1"; gene_id "Ledus.S6G012000"
Ledus.S6	AUGUSTUS	exon	4352832	4353086	.	-	.	transcript_id "Ledus.S6G012000.t1"; gene_id "Ledus.S6G012000"
Ledus.S6	AUGUSTUS	start_codon	4353084	4353086	.	-	0	transcript_id "Ledus.S6G012000.t1"; gene_id "Ledus.S6G012000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11424.t1 is derived from g5042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4204843	4206404	.	-	.	Ledus.S4G058000
Ledus.S4	AUGUSTUS	transcript	4204843	4206404	.	-	.	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	stop_codon	4204840	4204842	.	-	0	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	CDS	4204843	4205514	1	-	0	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	exon	4204843	4205514	.	-	.	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	intron	4205515	4205589	.	-	.	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	CDS	4205590	4205894	1	-	2	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	exon	4205590	4205894	.	-	.	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	intron	4205895	4205974	.	-	.	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	CDS	4205975	4206085	1	-	2	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	exon	4205975	4206085	.	-	.	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	intron	4206086	4206319	.	-	.	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	CDS	4206320	4206404	0.97	-	0	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	exon	4206320	4206404	.	-	.	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
Ledus.S4	AUGUSTUS	start_codon	4206402	4206404	.	-	0	transcript_id "Ledus.S4G058000.t1"; gene_id "Ledus.S4G058000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8847.t1 is derived from g9877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2249536	2250583	.	-	.	Ledus.S3G032400
Ledus.S3	AUGUSTUS	transcript	2249536	2250583	.	-	.	transcript_id "Ledus.S3G032400.t1"; gene_id "Ledus.S3G032400"
Ledus.S3	AUGUSTUS	stop_codon	2249533	2249535	.	-	0	transcript_id "Ledus.S3G032400.t1"; gene_id "Ledus.S3G032400"
Ledus.S3	AUGUSTUS	CDS	2249536	2249539	1	-	1	transcript_id "Ledus.S3G032400.t1"; gene_id "Ledus.S3G032400"
Ledus.S3	AUGUSTUS	exon	2249536	2249539	.	-	.	transcript_id "Ledus.S3G032400.t1"; gene_id "Ledus.S3G032400"
Ledus.S3	AUGUSTUS	intron	2249540	2249637	.	-	.	transcript_id "Ledus.S3G032400.t1"; gene_id "Ledus.S3G032400"
Ledus.S3	AUGUSTUS	CDS	2249638	2249740	1	-	2	transcript_id "Ledus.S3G032400.t1"; gene_id "Ledus.S3G032400"
Ledus.S3	AUGUSTUS	exon	2249638	2249740	.	-	.	transcript_id "Ledus.S3G032400.t1"; gene_id "Ledus.S3G032400"
Ledus.S3	AUGUSTUS	intron	2249741	2250411	.	-	.	transcript_id "Ledus.S3G032400.t1"; gene_id "Ledus.S3G032400"
Ledus.S3	AUGUSTUS	CDS	2250412	2250583	0.61	-	0	transcript_id "Ledus.S3G032400.t1"; gene_id "Ledus.S3G032400"
Ledus.S3	AUGUSTUS	exon	2250412	2250583	.	-	.	transcript_id "Ledus.S3G032400.t1"; gene_id "Ledus.S3G032400"
Ledus.S3	AUGUSTUS	start_codon	2250581	2250583	.	-	0	transcript_id "Ledus.S3G032400.t1"; gene_id "Ledus.S3G032400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12983.t1 is derived from g6793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1626929	1628497	.	+	.	Ledus.S6G004500
Ledus.S6	AUGUSTUS	transcript	1626929	1628497	.	+	.	transcript_id "Ledus.S6G004500.t1"; gene_id "Ledus.S6G004500"
Ledus.S6	AUGUSTUS	start_codon	1626929	1626931	.	+	0	transcript_id "Ledus.S6G004500.t1"; gene_id "Ledus.S6G004500"
Ledus.S6	AUGUSTUS	CDS	1626929	1626987	0.84	+	0	transcript_id "Ledus.S6G004500.t1"; gene_id "Ledus.S6G004500"
Ledus.S6	AUGUSTUS	exon	1626929	1626987	.	+	.	transcript_id "Ledus.S6G004500.t1"; gene_id "Ledus.S6G004500"
Ledus.S6	AUGUSTUS	intron	1626988	1627129	.	+	.	transcript_id "Ledus.S6G004500.t1"; gene_id "Ledus.S6G004500"
Ledus.S6	AUGUSTUS	CDS	1627130	1627777	0.51	+	1	transcript_id "Ledus.S6G004500.t1"; gene_id "Ledus.S6G004500"
Ledus.S6	AUGUSTUS	exon	1627130	1627777	.	+	.	transcript_id "Ledus.S6G004500.t1"; gene_id "Ledus.S6G004500"
Ledus.S6	AUGUSTUS	intron	1627778	1627899	.	+	.	transcript_id "Ledus.S6G004500.t1"; gene_id "Ledus.S6G004500"
Ledus.S6	AUGUSTUS	CDS	1627900	1628497	0.63	+	1	transcript_id "Ledus.S6G004500.t1"; gene_id "Ledus.S6G004500"
Ledus.S6	AUGUSTUS	exon	1627900	1628497	.	+	.	transcript_id "Ledus.S6G004500.t1"; gene_id "Ledus.S6G004500"
Ledus.S6	AUGUSTUS	stop_codon	1628498	1628500	.	+	0	transcript_id "Ledus.S6G004500.t1"; gene_id "Ledus.S6G004500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5875.t1 is derived from g3317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27513431	27514100	.	+	.	Ledus.S1G329600
Ledus.S1	AUGUSTUS	transcript	27513431	27514100	.	+	.	transcript_id "Ledus.S1G329600.t1"; gene_id "Ledus.S1G329600"
Ledus.S1	AUGUSTUS	start_codon	27513431	27513433	.	+	0	transcript_id "Ledus.S1G329600.t1"; gene_id "Ledus.S1G329600"
Ledus.S1	AUGUSTUS	CDS	27513431	27513534	0.35	+	0	transcript_id "Ledus.S1G329600.t1"; gene_id "Ledus.S1G329600"
Ledus.S1	AUGUSTUS	exon	27513431	27513534	.	+	.	transcript_id "Ledus.S1G329600.t1"; gene_id "Ledus.S1G329600"
Ledus.S1	AUGUSTUS	intron	27513535	27513651	.	+	.	transcript_id "Ledus.S1G329600.t1"; gene_id "Ledus.S1G329600"
Ledus.S1	AUGUSTUS	CDS	27513652	27513678	0.6	+	1	transcript_id "Ledus.S1G329600.t1"; gene_id "Ledus.S1G329600"
Ledus.S1	AUGUSTUS	exon	27513652	27513678	.	+	.	transcript_id "Ledus.S1G329600.t1"; gene_id "Ledus.S1G329600"
Ledus.S1	AUGUSTUS	intron	27513679	27514015	.	+	.	transcript_id "Ledus.S1G329600.t1"; gene_id "Ledus.S1G329600"
Ledus.S1	AUGUSTUS	CDS	27514016	27514100	1	+	1	transcript_id "Ledus.S1G329600.t1"; gene_id "Ledus.S1G329600"
Ledus.S1	AUGUSTUS	exon	27514016	27514100	.	+	.	transcript_id "Ledus.S1G329600.t1"; gene_id "Ledus.S1G329600"
Ledus.S1	AUGUSTUS	stop_codon	27514101	27514103	.	+	0	transcript_id "Ledus.S1G329600.t1"; gene_id "Ledus.S1G329600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6220.t1 is derived from g3663.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29726148	29727424	.	-	.	Ledus.S1G364100
Ledus.S1	AUGUSTUS	transcript	29726148	29727424	.	-	.	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	stop_codon	29726145	29726147	.	-	0	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	CDS	29726148	29726226	1	-	1	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	exon	29726148	29726226	.	-	.	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	intron	29726227	29726349	.	-	.	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	CDS	29726350	29726519	1	-	0	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	exon	29726350	29726519	.	-	.	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	intron	29726520	29726707	.	-	.	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	CDS	29726708	29727047	1	-	1	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	exon	29726708	29727047	.	-	.	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	intron	29727048	29727126	.	-	.	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	CDS	29727127	29727260	1	-	0	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	exon	29727127	29727260	.	-	.	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	intron	29727261	29727331	.	-	.	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	CDS	29727332	29727424	0.9	-	0	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	exon	29727332	29727424	.	-	.	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
Ledus.S1	AUGUSTUS	start_codon	29727422	29727424	.	-	0	transcript_id "Ledus.S1G364100.t1"; gene_id "Ledus.S1G364100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9549.t1 is derived from g10579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7745677	7747727	.	+	.	Ledus.S3G102600
Ledus.S3	AUGUSTUS	transcript	7745677	7747727	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	start_codon	7745677	7745679	.	+	0	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	CDS	7745677	7745762	0.75	+	0	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	exon	7745677	7745762	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	intron	7745763	7746151	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	CDS	7746152	7746294	0.76	+	1	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	exon	7746152	7746294	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	intron	7746295	7746404	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	CDS	7746405	7746499	1	+	2	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	exon	7746405	7746499	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	intron	7746500	7746581	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	CDS	7746582	7746674	1	+	0	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	exon	7746582	7746674	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	intron	7746675	7746916	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	CDS	7746917	7747011	1	+	0	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	exon	7746917	7747011	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	intron	7747012	7747126	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	CDS	7747127	7747200	1	+	1	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	exon	7747127	7747200	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	intron	7747201	7747344	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	CDS	7747345	7747433	1	+	2	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	exon	7747345	7747433	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	intron	7747434	7747607	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	CDS	7747608	7747727	1	+	0	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	exon	7747608	7747727	.	+	.	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
Ledus.S3	AUGUSTUS	stop_codon	7747728	7747730	.	+	0	transcript_id "Ledus.S3G102600.t1"; gene_id "Ledus.S3G102600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11880.t1 is derived from g5499.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7519506	7520118	.	-	.	Ledus.S4G103600
Ledus.S4	AUGUSTUS	transcript	7519506	7520118	.	-	.	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	stop_codon	7519503	7519505	.	-	0	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	CDS	7519506	7519547	0.66	-	0	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	exon	7519506	7519547	.	-	.	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	intron	7519548	7519630	.	-	.	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	CDS	7519631	7519729	1	-	0	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	exon	7519631	7519729	.	-	.	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	intron	7519730	7519837	.	-	.	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	CDS	7519838	7519938	1	-	2	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	exon	7519838	7519938	.	-	.	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	intron	7519939	7520030	.	-	.	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	CDS	7520031	7520118	0.72	-	0	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	exon	7520031	7520118	.	-	.	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
Ledus.S4	AUGUSTUS	start_codon	7520116	7520118	.	-	0	transcript_id "Ledus.S4G103600.t1"; gene_id "Ledus.S4G103600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3173.t1 is derived from g608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6570245	6571879	.	-	.	Ledus.S1G059400
Ledus.S1	AUGUSTUS	transcript	6570245	6571879	.	-	.	transcript_id "Ledus.S1G059400.t1"; gene_id "Ledus.S1G059400"
Ledus.S1	AUGUSTUS	stop_codon	6570242	6570244	.	-	0	transcript_id "Ledus.S1G059400.t1"; gene_id "Ledus.S1G059400"
Ledus.S1	AUGUSTUS	CDS	6570245	6571879	1	-	0	transcript_id "Ledus.S1G059400.t1"; gene_id "Ledus.S1G059400"
Ledus.S1	AUGUSTUS	exon	6570245	6571879	.	-	.	transcript_id "Ledus.S1G059400.t1"; gene_id "Ledus.S1G059400"
Ledus.S1	AUGUSTUS	start_codon	6571877	6571879	.	-	0	transcript_id "Ledus.S1G059400.t1"; gene_id "Ledus.S1G059400"
Ledus.S1	AUGUSTUS	transcript	6570245	6571573	.	-	.	transcript_id "Ledus.S1G059400.t2"; gene_id "Ledus.S1G059400"
Ledus.S1	AUGUSTUS	stop_codon	6570242	6570244	.	-	0	transcript_id "Ledus.S1G059400.t2"; gene_id "Ledus.S1G059400"
Ledus.S1	AUGUSTUS	CDS	6570245	6571573	0.51	-	0	transcript_id "Ledus.S1G059400.t2"; gene_id "Ledus.S1G059400"
Ledus.S1	AUGUSTUS	exon	6570245	6571573	.	-	.	transcript_id "Ledus.S1G059400.t2"; gene_id "Ledus.S1G059400"
Ledus.S1	AUGUSTUS	start_codon	6571571	6571573	.	-	0	transcript_id "Ledus.S1G059400.t2"; gene_id "Ledus.S1G059400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg234.t1 is derived from g7095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1020652	1021298	.	+	.	Ledus.S2G011600
Ledus.S2	AUGUSTUS	transcript	1020652	1021298	.	+	.	transcript_id "Ledus.S2G011600.t1"; gene_id "Ledus.S2G011600"
Ledus.S2	AUGUSTUS	start_codon	1020652	1020654	.	+	0	transcript_id "Ledus.S2G011600.t1"; gene_id "Ledus.S2G011600"
Ledus.S2	AUGUSTUS	CDS	1020652	1020840	0.89	+	0	transcript_id "Ledus.S2G011600.t1"; gene_id "Ledus.S2G011600"
Ledus.S2	AUGUSTUS	exon	1020652	1020840	.	+	.	transcript_id "Ledus.S2G011600.t1"; gene_id "Ledus.S2G011600"
Ledus.S2	AUGUSTUS	intron	1020841	1020923	.	+	.	transcript_id "Ledus.S2G011600.t1"; gene_id "Ledus.S2G011600"
Ledus.S2	AUGUSTUS	CDS	1020924	1021058	0.83	+	0	transcript_id "Ledus.S2G011600.t1"; gene_id "Ledus.S2G011600"
Ledus.S2	AUGUSTUS	exon	1020924	1021058	.	+	.	transcript_id "Ledus.S2G011600.t1"; gene_id "Ledus.S2G011600"
Ledus.S2	AUGUSTUS	intron	1021059	1021172	.	+	.	transcript_id "Ledus.S2G011600.t1"; gene_id "Ledus.S2G011600"
Ledus.S2	AUGUSTUS	CDS	1021173	1021298	0.59	+	0	transcript_id "Ledus.S2G011600.t1"; gene_id "Ledus.S2G011600"
Ledus.S2	AUGUSTUS	exon	1021173	1021298	.	+	.	transcript_id "Ledus.S2G011600.t1"; gene_id "Ledus.S2G011600"
Ledus.S2	AUGUSTUS	stop_codon	1021299	1021301	.	+	0	transcript_id "Ledus.S2G011600.t1"; gene_id "Ledus.S2G011600"
# This transcript jg1898.t2 is derived from g8761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1899.t1 is derived from g8762.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13260913	13263288	.	+	.	Ledus.S2G178100
Ledus.S2	AUGUSTUS	transcript	13260913	13263288	.	+	.	transcript_id "Ledus.S2G178100.t1"; gene_id "Ledus.S2G178100"
Ledus.S2	AUGUSTUS	start_codon	13260913	13260915	.	+	0	transcript_id "Ledus.S2G178100.t1"; gene_id "Ledus.S2G178100"
Ledus.S2	AUGUSTUS	CDS	13260913	13263288	0.92	+	0	transcript_id "Ledus.S2G178100.t1"; gene_id "Ledus.S2G178100"
Ledus.S2	AUGUSTUS	exon	13260913	13263288	.	+	.	transcript_id "Ledus.S2G178100.t1"; gene_id "Ledus.S2G178100"
Ledus.S2	AUGUSTUS	stop_codon	13263289	13263291	.	+	0	transcript_id "Ledus.S2G178100.t1"; gene_id "Ledus.S2G178100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2974.t1 is derived from g409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5017384	5017974	.	-	.	Ledus.S1G039500
Ledus.S1	AUGUSTUS	transcript	5017384	5017974	.	-	.	transcript_id "Ledus.S1G039500.t1"; gene_id "Ledus.S1G039500"
Ledus.S1	AUGUSTUS	stop_codon	5017381	5017383	.	-	0	transcript_id "Ledus.S1G039500.t1"; gene_id "Ledus.S1G039500"
Ledus.S1	AUGUSTUS	CDS	5017384	5017974	0.88	-	0	transcript_id "Ledus.S1G039500.t1"; gene_id "Ledus.S1G039500"
Ledus.S1	AUGUSTUS	exon	5017384	5017974	.	-	.	transcript_id "Ledus.S1G039500.t1"; gene_id "Ledus.S1G039500"
Ledus.S1	AUGUSTUS	start_codon	5017972	5017974	.	-	0	transcript_id "Ledus.S1G039500.t1"; gene_id "Ledus.S1G039500"
# This transcript jg4993.t2 is derived from g2431.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4993.t3 is derived from g2431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4994.t1 is derived from g2432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21054059	21054453	.	-	.	Ledus.S1G241500
Ledus.S1	AUGUSTUS	transcript	21054059	21054453	.	-	.	transcript_id "Ledus.S1G241500.t1"; gene_id "Ledus.S1G241500"
Ledus.S1	AUGUSTUS	stop_codon	21054056	21054058	.	-	0	transcript_id "Ledus.S1G241500.t1"; gene_id "Ledus.S1G241500"
Ledus.S1	AUGUSTUS	CDS	21054059	21054138	0.74	-	2	transcript_id "Ledus.S1G241500.t1"; gene_id "Ledus.S1G241500"
Ledus.S1	AUGUSTUS	exon	21054059	21054138	.	-	.	transcript_id "Ledus.S1G241500.t1"; gene_id "Ledus.S1G241500"
Ledus.S1	AUGUSTUS	intron	21054139	21054235	.	-	.	transcript_id "Ledus.S1G241500.t1"; gene_id "Ledus.S1G241500"
Ledus.S1	AUGUSTUS	CDS	21054236	21054257	0.96	-	0	transcript_id "Ledus.S1G241500.t1"; gene_id "Ledus.S1G241500"
Ledus.S1	AUGUSTUS	exon	21054236	21054257	.	-	.	transcript_id "Ledus.S1G241500.t1"; gene_id "Ledus.S1G241500"
Ledus.S1	AUGUSTUS	intron	21054258	21054348	.	-	.	transcript_id "Ledus.S1G241500.t1"; gene_id "Ledus.S1G241500"
Ledus.S1	AUGUSTUS	CDS	21054349	21054453	0.9	-	0	transcript_id "Ledus.S1G241500.t1"; gene_id "Ledus.S1G241500"
Ledus.S1	AUGUSTUS	exon	21054349	21054453	.	-	.	transcript_id "Ledus.S1G241500.t1"; gene_id "Ledus.S1G241500"
Ledus.S1	AUGUSTUS	start_codon	21054451	21054453	.	-	0	transcript_id "Ledus.S1G241500.t1"; gene_id "Ledus.S1G241500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9246.t1 is derived from g10276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5598135	5600759	.	-	.	Ledus.S3G072300
Ledus.S3	AUGUSTUS	transcript	5598135	5600759	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	stop_codon	5598132	5598134	.	-	0	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	CDS	5598135	5598330	0.9	-	1	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	exon	5598135	5598330	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	intron	5598331	5598459	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	CDS	5598460	5598569	0.99	-	0	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	exon	5598460	5598569	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	intron	5598570	5598675	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	CDS	5598676	5598757	1	-	1	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	exon	5598676	5598757	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	intron	5598758	5598828	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	CDS	5598829	5598983	1	-	0	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	exon	5598829	5598983	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	intron	5598984	5599092	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	CDS	5599093	5599157	0.99	-	2	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	exon	5599093	5599157	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	intron	5599158	5599249	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	CDS	5599250	5599340	1	-	0	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	exon	5599250	5599340	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	intron	5599341	5599428	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	CDS	5599429	5599621	1	-	1	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	exon	5599429	5599621	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	intron	5599622	5599851	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	CDS	5599852	5599952	1	-	0	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	exon	5599852	5599952	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	intron	5599953	5600117	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	CDS	5600118	5600195	1	-	0	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	exon	5600118	5600195	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	intron	5600196	5600285	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	CDS	5600286	5600372	1	-	0	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	exon	5600286	5600372	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	intron	5600373	5600470	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	CDS	5600471	5600538	0.85	-	2	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	exon	5600471	5600538	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	intron	5600539	5600668	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	CDS	5600669	5600759	0.68	-	0	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	exon	5600669	5600759	.	-	.	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
Ledus.S3	AUGUSTUS	start_codon	5600757	5600759	.	-	0	transcript_id "Ledus.S3G072300.t1"; gene_id "Ledus.S3G072300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2043.t1 is derived from g8906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14307143	14308457	.	-	.	Ledus.S2G192500
Ledus.S2	AUGUSTUS	transcript	14307143	14308457	.	-	.	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	stop_codon	14307140	14307142	.	-	0	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	CDS	14307143	14307246	1	-	2	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	exon	14307143	14307246	.	-	.	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	intron	14307247	14307334	.	-	.	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	CDS	14307335	14307427	1	-	2	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	exon	14307335	14307427	.	-	.	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	intron	14307428	14307510	.	-	.	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	CDS	14307511	14307679	1	-	0	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	exon	14307511	14307679	.	-	.	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	intron	14307680	14307779	.	-	.	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	CDS	14307780	14307875	1	-	0	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	exon	14307780	14307875	.	-	.	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	intron	14307876	14307965	.	-	.	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	CDS	14307966	14308105	1	-	2	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	exon	14307966	14308105	.	-	.	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	intron	14308106	14308189	.	-	.	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	CDS	14308190	14308457	0.47	-	0	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	exon	14308190	14308457	.	-	.	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
Ledus.S2	AUGUSTUS	start_codon	14308455	14308457	.	-	0	transcript_id "Ledus.S2G192500.t1"; gene_id "Ledus.S2G192500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4471.t1 is derived from g1907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17234321	17235290	.	-	.	Ledus.S1G189200
Ledus.S1	AUGUSTUS	transcript	17234321	17235290	.	-	.	transcript_id "Ledus.S1G189200.t1"; gene_id "Ledus.S1G189200"
Ledus.S1	AUGUSTUS	stop_codon	17234318	17234320	.	-	0	transcript_id "Ledus.S1G189200.t1"; gene_id "Ledus.S1G189200"
Ledus.S1	AUGUSTUS	CDS	17234321	17234892	0.98	-	2	transcript_id "Ledus.S1G189200.t1"; gene_id "Ledus.S1G189200"
Ledus.S1	AUGUSTUS	exon	17234321	17234892	.	-	.	transcript_id "Ledus.S1G189200.t1"; gene_id "Ledus.S1G189200"
Ledus.S1	AUGUSTUS	intron	17234893	17235049	.	-	.	transcript_id "Ledus.S1G189200.t1"; gene_id "Ledus.S1G189200"
Ledus.S1	AUGUSTUS	CDS	17235050	17235123	0.93	-	1	transcript_id "Ledus.S1G189200.t1"; gene_id "Ledus.S1G189200"
Ledus.S1	AUGUSTUS	exon	17235050	17235123	.	-	.	transcript_id "Ledus.S1G189200.t1"; gene_id "Ledus.S1G189200"
Ledus.S1	AUGUSTUS	intron	17235124	17235246	.	-	.	transcript_id "Ledus.S1G189200.t1"; gene_id "Ledus.S1G189200"
Ledus.S1	AUGUSTUS	CDS	17235247	17235290	0.98	-	0	transcript_id "Ledus.S1G189200.t1"; gene_id "Ledus.S1G189200"
Ledus.S1	AUGUSTUS	exon	17235247	17235290	.	-	.	transcript_id "Ledus.S1G189200.t1"; gene_id "Ledus.S1G189200"
Ledus.S1	AUGUSTUS	start_codon	17235288	17235290	.	-	0	transcript_id "Ledus.S1G189200.t1"; gene_id "Ledus.S1G189200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg552.t1 is derived from g7413.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3217856	3221208	.	-	.	Ledus.S2G043400
Ledus.S2	AUGUSTUS	transcript	3217856	3221208	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	stop_codon	3217853	3217855	.	-	0	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3217856	3218221	0.67	-	0	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3217856	3218221	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3218222	3218344	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3218345	3218447	1	-	1	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3218345	3218447	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3218448	3218583	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3218584	3218651	1	-	0	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3218584	3218651	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3218652	3218734	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3218735	3218817	1	-	2	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3218735	3218817	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3218818	3218937	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3218938	3219031	1	-	0	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3218938	3219031	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3219032	3219138	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3219139	3219192	1	-	0	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3219139	3219192	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3219193	3219423	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3219424	3219502	1	-	1	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3219424	3219502	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3219503	3219638	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3219639	3219718	1	-	0	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3219639	3219718	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3219719	3219856	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3219857	3219965	1	-	1	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3219857	3219965	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3219966	3220149	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3220150	3220250	1	-	0	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3220150	3220250	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3220251	3220428	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3220429	3220548	1	-	0	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3220429	3220548	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3220549	3220647	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3220648	3220740	1	-	0	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3220648	3220740	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3220741	3220861	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3220862	3220891	1	-	0	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3220862	3220891	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	intron	3220892	3221109	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	CDS	3221110	3221208	0.99	-	0	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	exon	3221110	3221208	.	-	.	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
Ledus.S2	AUGUSTUS	start_codon	3221206	3221208	.	-	0	transcript_id "Ledus.S2G043400.t1"; gene_id "Ledus.S2G043400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4795.t1 is derived from g2233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19803221	19803535	.	-	.	Ledus.S1G221600
Ledus.S1	AUGUSTUS	transcript	19803221	19803535	.	-	.	transcript_id "Ledus.S1G221600.t1"; gene_id "Ledus.S1G221600"
Ledus.S1	AUGUSTUS	stop_codon	19803218	19803220	.	-	0	transcript_id "Ledus.S1G221600.t1"; gene_id "Ledus.S1G221600"
Ledus.S1	AUGUSTUS	CDS	19803221	19803535	0.22	-	0	transcript_id "Ledus.S1G221600.t1"; gene_id "Ledus.S1G221600"
Ledus.S1	AUGUSTUS	exon	19803221	19803535	.	-	.	transcript_id "Ledus.S1G221600.t1"; gene_id "Ledus.S1G221600"
Ledus.S1	AUGUSTUS	start_codon	19803533	19803535	.	-	0	transcript_id "Ledus.S1G221600.t1"; gene_id "Ledus.S1G221600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8938.t1 is derived from g9968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3319741	3322591	.	+	.	Ledus.S3G041500
Ledus.S3	AUGUSTUS	transcript	3319741	3322591	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	start_codon	3319741	3319743	.	+	0	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3319741	3320037	0.86	+	0	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3319741	3320037	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3320038	3320108	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3320109	3320178	1	+	0	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3320109	3320178	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3320179	3320264	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3320265	3320371	1	+	2	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3320265	3320371	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3320372	3320475	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3320476	3320595	1	+	0	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3320476	3320595	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3320596	3320703	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3320704	3320846	0.99	+	0	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3320704	3320846	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3320847	3320937	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3320938	3321189	1	+	1	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3320938	3321189	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3321190	3321443	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3321444	3321874	1	+	1	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3321444	3321874	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3321875	3321959	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3321960	3322135	1	+	2	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3321960	3322135	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3322136	3322236	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3322237	3322333	0.8	+	0	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3322237	3322333	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3322334	3322433	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3322434	3322591	1	+	2	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3322434	3322591	.	+	.	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	stop_codon	3322592	3322594	.	+	0	transcript_id "Ledus.S3G041500.t1"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	transcript	3320300	3322591	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	start_codon	3320300	3320302	.	+	0	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3320300	3320371	0.34	+	0	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3320300	3320371	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3320372	3320475	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3320476	3320595	1	+	0	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3320476	3320595	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3320596	3320703	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3320704	3320846	1	+	0	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3320704	3320846	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3320847	3320937	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3320938	3321189	1	+	1	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3320938	3321189	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3321190	3321443	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3321444	3321874	1	+	1	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3321444	3321874	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3321875	3321959	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3321960	3322135	1	+	2	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3321960	3322135	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3322136	3322236	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3322237	3322333	0.86	+	0	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3322237	3322333	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3322334	3322433	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3322434	3322591	1	+	2	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3322434	3322591	.	+	.	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	stop_codon	3322592	3322594	.	+	0	transcript_id "Ledus.S3G041500.t2"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	transcript	3319741	3320265	.	+	.	transcript_id "Ledus.S3G041500.t3"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	start_codon	3319741	3319743	.	+	0	transcript_id "Ledus.S3G041500.t3"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3319741	3320032	0.27	+	0	transcript_id "Ledus.S3G041500.t3"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3319741	3320032	.	+	.	transcript_id "Ledus.S3G041500.t3"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3320033	3320108	.	+	.	transcript_id "Ledus.S3G041500.t3"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3320109	3320178	0.31	+	2	transcript_id "Ledus.S3G041500.t3"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3320109	3320178	.	+	.	transcript_id "Ledus.S3G041500.t3"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	intron	3320179	3320264	.	+	.	transcript_id "Ledus.S3G041500.t3"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	CDS	3320265	3320265	0.31	+	1	transcript_id "Ledus.S3G041500.t3"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	exon	3320265	3320265	.	+	.	transcript_id "Ledus.S3G041500.t3"; gene_id "Ledus.S3G041500"
Ledus.S3	AUGUSTUS	stop_codon	3320266	3320268	.	+	0	transcript_id "Ledus.S3G041500.t3"; gene_id "Ledus.S3G041500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5663.t1 is derived from g3102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25695926	25698797	.	-	.	Ledus.S1G308400
Ledus.S1	AUGUSTUS	transcript	25695926	25698797	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	stop_codon	25695923	25695925	.	-	0	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	CDS	25695926	25696005	1	-	2	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	exon	25695926	25696005	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	intron	25696006	25696100	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	CDS	25696101	25696308	1	-	0	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	exon	25696101	25696308	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	intron	25696309	25696467	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	CDS	25696468	25696493	0.99	-	2	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	exon	25696468	25696493	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	intron	25696494	25696596	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	CDS	25696597	25696714	0.98	-	0	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	exon	25696597	25696714	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	intron	25696715	25696804	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	CDS	25696805	25696894	1	-	0	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	exon	25696805	25696894	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	intron	25696895	25696969	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	CDS	25696970	25697013	1	-	2	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	exon	25696970	25697013	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	intron	25697014	25697091	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	CDS	25697092	25698096	0.35	-	2	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	exon	25697092	25698096	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	intron	25698097	25698397	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	CDS	25698398	25698477	0.33	-	1	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	exon	25698398	25698477	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	intron	25698478	25698558	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	CDS	25698559	25698603	0.67	-	1	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	exon	25698559	25698603	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	intron	25698604	25698762	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	CDS	25698763	25698797	0.43	-	0	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	exon	25698763	25698797	.	-	.	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
Ledus.S1	AUGUSTUS	start_codon	25698795	25698797	.	-	0	transcript_id "Ledus.S1G308400.t1"; gene_id "Ledus.S1G308400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11525.t1 is derived from g5143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5122613	5126325	.	-	.	Ledus.S4G068100
Ledus.S4	AUGUSTUS	transcript	5122613	5126325	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	stop_codon	5122610	5122612	.	-	0	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	CDS	5122613	5122737	0.94	-	2	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	exon	5122613	5122737	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	intron	5122738	5122933	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	CDS	5122934	5123059	0.95	-	2	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	exon	5122934	5123059	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	intron	5123060	5123157	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	CDS	5123158	5124010	0.96	-	0	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	exon	5123158	5124010	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	intron	5124011	5124129	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	CDS	5124130	5124303	1	-	0	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	exon	5124130	5124303	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	intron	5124304	5124446	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	CDS	5124447	5124491	1	-	0	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	exon	5124447	5124491	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	intron	5124492	5124580	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	CDS	5124581	5124691	1	-	0	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	exon	5124581	5124691	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	intron	5124692	5124794	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	CDS	5124795	5124872	1	-	0	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	exon	5124795	5124872	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	intron	5124873	5124978	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	CDS	5124979	5125043	0.97	-	2	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	exon	5124979	5125043	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	intron	5125044	5125148	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	CDS	5125149	5125695	0.99	-	0	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	exon	5125149	5125695	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	intron	5125696	5125956	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	CDS	5125957	5126325	1	-	0	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	exon	5125957	5126325	.	-	.	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
Ledus.S4	AUGUSTUS	start_codon	5126323	5126325	.	-	0	transcript_id "Ledus.S4G068100.t1"; gene_id "Ledus.S4G068100"
# This transcript jg4215.t2 is derived from g1651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4216.t1 is derived from g1652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15613252	15615628	.	-	.	Ledus.S1G163700
Ledus.S1	AUGUSTUS	transcript	15613252	15615628	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	stop_codon	15613249	15613251	.	-	0	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	CDS	15613252	15613496	1	-	2	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	exon	15613252	15613496	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	intron	15613497	15613589	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	CDS	15613590	15613669	1	-	1	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	exon	15613590	15613669	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	intron	15613670	15613779	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	CDS	15613780	15613892	1	-	0	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	exon	15613780	15613892	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	intron	15613893	15614011	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	CDS	15614012	15614068	1	-	0	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	exon	15614012	15614068	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	intron	15614069	15614188	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	CDS	15614189	15614242	1	-	0	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	exon	15614189	15614242	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	intron	15614243	15614499	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	CDS	15614500	15614572	1	-	1	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	exon	15614500	15614572	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	intron	15614573	15614743	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	CDS	15614744	15614867	1	-	2	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	exon	15614744	15614867	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	intron	15614868	15615007	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	CDS	15615008	15615213	0.88	-	1	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	exon	15615008	15615213	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	intron	15615214	15615569	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	CDS	15615570	15615628	0.54	-	0	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	exon	15615570	15615628	.	-	.	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
Ledus.S1	AUGUSTUS	start_codon	15615626	15615628	.	-	0	transcript_id "Ledus.S1G163700.t1"; gene_id "Ledus.S1G163700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4212.t1 is derived from g1648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15584529	15584843	.	-	.	Ledus.S1G163300
Ledus.S1	AUGUSTUS	transcript	15584529	15584843	.	-	.	transcript_id "Ledus.S1G163300.t1"; gene_id "Ledus.S1G163300"
Ledus.S1	AUGUSTUS	stop_codon	15584526	15584528	.	-	0	transcript_id "Ledus.S1G163300.t1"; gene_id "Ledus.S1G163300"
Ledus.S1	AUGUSTUS	CDS	15584529	15584843	0.98	-	0	transcript_id "Ledus.S1G163300.t1"; gene_id "Ledus.S1G163300"
Ledus.S1	AUGUSTUS	exon	15584529	15584843	.	-	.	transcript_id "Ledus.S1G163300.t1"; gene_id "Ledus.S1G163300"
Ledus.S1	AUGUSTUS	start_codon	15584841	15584843	.	-	0	transcript_id "Ledus.S1G163300.t1"; gene_id "Ledus.S1G163300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6733.t1 is derived from g4176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33618802	33620330	.	+	.	Ledus.S1G415400
Ledus.S1	AUGUSTUS	transcript	33618802	33620330	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	start_codon	33618802	33618804	.	+	0	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	CDS	33618802	33618893	1	+	0	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	exon	33618802	33618893	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	intron	33618894	33618976	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	CDS	33618977	33619153	1	+	1	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	exon	33618977	33619153	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	intron	33619154	33619236	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	CDS	33619237	33619297	1	+	1	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	exon	33619237	33619297	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	intron	33619298	33619372	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	CDS	33619373	33619574	1	+	0	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	exon	33619373	33619574	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	intron	33619575	33619673	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	CDS	33619674	33619795	1	+	2	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	exon	33619674	33619795	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	intron	33619796	33619898	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	CDS	33619899	33620003	1	+	0	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	exon	33619899	33620003	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	intron	33620004	33620087	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	CDS	33620088	33620097	1	+	0	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	exon	33620088	33620097	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	intron	33620098	33620162	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	CDS	33620163	33620189	1	+	2	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	exon	33620163	33620189	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	intron	33620190	33620289	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	CDS	33620290	33620330	0.99	+	2	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	exon	33620290	33620330	.	+	.	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
Ledus.S1	AUGUSTUS	stop_codon	33620331	33620333	.	+	0	transcript_id "Ledus.S1G415400.t1"; gene_id "Ledus.S1G415400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10115.t1 is derived from g11145.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12890112	12892015	.	+	.	Ledus.S3G159200
Ledus.S3	AUGUSTUS	transcript	12890112	12892015	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	start_codon	12890112	12890114	.	+	0	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12890112	12890117	0.99	+	0	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12890112	12890117	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	intron	12890118	12890555	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12890556	12890702	0.89	+	0	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12890556	12890702	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	intron	12890703	12891038	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12891039	12891192	1	+	0	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12891039	12891192	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	intron	12891193	12891276	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12891277	12891401	1	+	2	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12891277	12891401	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	intron	12891402	12891588	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12891589	12891702	1	+	0	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12891589	12891702	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	intron	12891703	12891796	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12891797	12891869	0.92	+	0	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12891797	12891869	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	intron	12891870	12891980	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12891981	12892015	0.92	+	2	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12891981	12892015	.	+	.	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	stop_codon	12892016	12892018	.	+	0	transcript_id "Ledus.S3G159200.t1"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	transcript	12890377	12892015	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	start_codon	12890377	12890379	.	+	0	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12890377	12890403	0.74	+	0	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12890377	12890403	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	intron	12890404	12890555	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12890556	12890702	0.94	+	0	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12890556	12890702	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	intron	12890703	12891038	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12891039	12891192	1	+	0	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12891039	12891192	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	intron	12891193	12891276	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12891277	12891401	1	+	2	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12891277	12891401	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	intron	12891402	12891588	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12891589	12891702	1	+	0	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12891589	12891702	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	intron	12891703	12891796	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12891797	12891869	0.92	+	0	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12891797	12891869	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	intron	12891870	12891980	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	CDS	12891981	12892015	0.92	+	2	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	exon	12891981	12892015	.	+	.	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
Ledus.S3	AUGUSTUS	stop_codon	12892016	12892018	.	+	0	transcript_id "Ledus.S3G159200.t2"; gene_id "Ledus.S3G159200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg823.t1 is derived from g7684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5323838	5324074	.	-	.	Ledus.S2G070500
Ledus.S2	AUGUSTUS	transcript	5323838	5324074	.	-	.	transcript_id "Ledus.S2G070500.t1"; gene_id "Ledus.S2G070500"
Ledus.S2	AUGUSTUS	stop_codon	5323835	5323837	.	-	0	transcript_id "Ledus.S2G070500.t1"; gene_id "Ledus.S2G070500"
Ledus.S2	AUGUSTUS	CDS	5323838	5324074	0.44	-	0	transcript_id "Ledus.S2G070500.t1"; gene_id "Ledus.S2G070500"
Ledus.S2	AUGUSTUS	exon	5323838	5324074	.	-	.	transcript_id "Ledus.S2G070500.t1"; gene_id "Ledus.S2G070500"
Ledus.S2	AUGUSTUS	start_codon	5324072	5324074	.	-	0	transcript_id "Ledus.S2G070500.t1"; gene_id "Ledus.S2G070500"
# This transcript jg4331.t2 is derived from g1767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4332.t1 is derived from g1768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16423952	16425700	.	+	.	Ledus.S1G175300
Ledus.S1	AUGUSTUS	transcript	16423952	16425700	.	+	.	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	start_codon	16423952	16423954	.	+	0	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	CDS	16423952	16424187	0.99	+	0	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	exon	16423952	16424187	.	+	.	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	intron	16424188	16424266	.	+	.	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	CDS	16424267	16424555	1	+	1	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	exon	16424267	16424555	.	+	.	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	intron	16424556	16424624	.	+	.	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	CDS	16424625	16424933	1	+	0	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	exon	16424625	16424933	.	+	.	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	intron	16424934	16425026	.	+	.	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	CDS	16425027	16425280	1	+	0	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	exon	16425027	16425280	.	+	.	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	intron	16425281	16425375	.	+	.	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	CDS	16425376	16425700	0.84	+	1	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	exon	16425376	16425700	.	+	.	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
Ledus.S1	AUGUSTUS	stop_codon	16425701	16425703	.	+	0	transcript_id "Ledus.S1G175300.t1"; gene_id "Ledus.S1G175300"
# This transcript jg10427.t2 is derived from g11457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10428.t1 is derived from g11458.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15080854	15082071	.	-	.	Ledus.S3G190500
Ledus.S3	AUGUSTUS	transcript	15080854	15082071	.	-	.	transcript_id "Ledus.S3G190500.t1"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	stop_codon	15080851	15080853	.	-	0	transcript_id "Ledus.S3G190500.t1"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	CDS	15080854	15081502	0.79	-	1	transcript_id "Ledus.S3G190500.t1"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	exon	15080854	15081502	.	-	.	transcript_id "Ledus.S3G190500.t1"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	intron	15081503	15081715	.	-	.	transcript_id "Ledus.S3G190500.t1"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	CDS	15081716	15082071	0.99	-	0	transcript_id "Ledus.S3G190500.t1"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	exon	15081716	15082071	.	-	.	transcript_id "Ledus.S3G190500.t1"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	start_codon	15082069	15082071	.	-	0	transcript_id "Ledus.S3G190500.t1"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	transcript	15081576	15082071	.	-	.	transcript_id "Ledus.S3G190500.t2"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	stop_codon	15081573	15081575	.	-	0	transcript_id "Ledus.S3G190500.t2"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	CDS	15081576	15081630	0.31	-	1	transcript_id "Ledus.S3G190500.t2"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	exon	15081576	15081630	.	-	.	transcript_id "Ledus.S3G190500.t2"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	intron	15081631	15081715	.	-	.	transcript_id "Ledus.S3G190500.t2"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	CDS	15081716	15082071	0.96	-	0	transcript_id "Ledus.S3G190500.t2"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	exon	15081716	15082071	.	-	.	transcript_id "Ledus.S3G190500.t2"; gene_id "Ledus.S3G190500"
Ledus.S3	AUGUSTUS	start_codon	15082069	15082071	.	-	0	transcript_id "Ledus.S3G190500.t2"; gene_id "Ledus.S3G190500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9282.t1 is derived from g10312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5766964	5768182	.	-	.	Ledus.S3G075900
Ledus.S3	AUGUSTUS	transcript	5766964	5768182	.	-	.	transcript_id "Ledus.S3G075900.t1"; gene_id "Ledus.S3G075900"
Ledus.S3	AUGUSTUS	stop_codon	5766961	5766963	.	-	0	transcript_id "Ledus.S3G075900.t1"; gene_id "Ledus.S3G075900"
Ledus.S3	AUGUSTUS	CDS	5766964	5766969	1	-	0	transcript_id "Ledus.S3G075900.t1"; gene_id "Ledus.S3G075900"
Ledus.S3	AUGUSTUS	exon	5766964	5766969	.	-	.	transcript_id "Ledus.S3G075900.t1"; gene_id "Ledus.S3G075900"
Ledus.S3	AUGUSTUS	intron	5766970	5767609	.	-	.	transcript_id "Ledus.S3G075900.t1"; gene_id "Ledus.S3G075900"
Ledus.S3	AUGUSTUS	CDS	5767610	5768182	0.97	-	0	transcript_id "Ledus.S3G075900.t1"; gene_id "Ledus.S3G075900"
Ledus.S3	AUGUSTUS	exon	5767610	5768182	.	-	.	transcript_id "Ledus.S3G075900.t1"; gene_id "Ledus.S3G075900"
Ledus.S3	AUGUSTUS	start_codon	5768180	5768182	.	-	0	transcript_id "Ledus.S3G075900.t1"; gene_id "Ledus.S3G075900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10192.t1 is derived from g11222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13507097	13508205	.	+	.	Ledus.S3G166900
Ledus.S3	AUGUSTUS	transcript	13507097	13508205	.	+	.	transcript_id "Ledus.S3G166900.t1"; gene_id "Ledus.S3G166900"
Ledus.S3	AUGUSTUS	start_codon	13507097	13507099	.	+	0	transcript_id "Ledus.S3G166900.t1"; gene_id "Ledus.S3G166900"
Ledus.S3	AUGUSTUS	CDS	13507097	13507582	0.94	+	0	transcript_id "Ledus.S3G166900.t1"; gene_id "Ledus.S3G166900"
Ledus.S3	AUGUSTUS	exon	13507097	13507582	.	+	.	transcript_id "Ledus.S3G166900.t1"; gene_id "Ledus.S3G166900"
Ledus.S3	AUGUSTUS	intron	13507583	13507655	.	+	.	transcript_id "Ledus.S3G166900.t1"; gene_id "Ledus.S3G166900"
Ledus.S3	AUGUSTUS	CDS	13507656	13507852	1	+	0	transcript_id "Ledus.S3G166900.t1"; gene_id "Ledus.S3G166900"
Ledus.S3	AUGUSTUS	exon	13507656	13507852	.	+	.	transcript_id "Ledus.S3G166900.t1"; gene_id "Ledus.S3G166900"
Ledus.S3	AUGUSTUS	intron	13507853	13507964	.	+	.	transcript_id "Ledus.S3G166900.t1"; gene_id "Ledus.S3G166900"
Ledus.S3	AUGUSTUS	CDS	13507965	13508205	0.47	+	1	transcript_id "Ledus.S3G166900.t1"; gene_id "Ledus.S3G166900"
Ledus.S3	AUGUSTUS	exon	13507965	13508205	.	+	.	transcript_id "Ledus.S3G166900.t1"; gene_id "Ledus.S3G166900"
Ledus.S3	AUGUSTUS	stop_codon	13508206	13508208	.	+	0	transcript_id "Ledus.S3G166900.t1"; gene_id "Ledus.S3G166900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12427.t1 is derived from g6048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11971576	11975556	.	-	.	Ledus.S4G158300
Ledus.S4	AUGUSTUS	transcript	11971576	11975556	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	stop_codon	11971573	11971575	.	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11971576	11971939	1	-	1	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11971576	11971939	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11971940	11972030	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11972031	11972215	1	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11972031	11972215	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11972216	11972401	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11972402	11972521	1	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11972402	11972521	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11972522	11972663	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11972664	11972766	1	-	1	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11972664	11972766	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11972767	11972932	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11972933	11973016	1	-	1	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11972933	11973016	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11973017	11973207	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11973208	11973314	1	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11973208	11973314	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11973315	11973468	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11973469	11973537	1	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11973469	11973537	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11973538	11973656	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11973657	11973800	1	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11973657	11973800	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11973801	11973966	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11973967	11974116	1	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11973967	11974116	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11974117	11974245	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11974246	11974356	1	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11974246	11974356	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11974357	11974503	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11974504	11974803	0.93	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11974504	11974803	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11974804	11974920	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11974921	11974992	1	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11974921	11974992	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11974993	11975127	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11975128	11975199	1	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11975128	11975199	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11975200	11975292	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11975293	11975376	1	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11975293	11975376	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	intron	11975377	11975472	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	CDS	11975473	11975556	0.99	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	exon	11975473	11975556	.	-	.	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
Ledus.S4	AUGUSTUS	start_codon	11975554	11975556	.	-	0	transcript_id "Ledus.S4G158300.t1"; gene_id "Ledus.S4G158300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12871.t1 is derived from g4444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	142419	143346	.	+	.	Ledus.C10G001400
Ledus.C10	AUGUSTUS	transcript	142419	143346	.	+	.	transcript_id "Ledus.C10G001400.t1"; gene_id "Ledus.C10G001400"
Ledus.C10	AUGUSTUS	start_codon	142419	142421	.	+	0	transcript_id "Ledus.C10G001400.t1"; gene_id "Ledus.C10G001400"
Ledus.C10	AUGUSTUS	CDS	142419	142503	0.94	+	0	transcript_id "Ledus.C10G001400.t1"; gene_id "Ledus.C10G001400"
Ledus.C10	AUGUSTUS	exon	142419	142503	.	+	.	transcript_id "Ledus.C10G001400.t1"; gene_id "Ledus.C10G001400"
Ledus.C10	AUGUSTUS	intron	142504	142672	.	+	.	transcript_id "Ledus.C10G001400.t1"; gene_id "Ledus.C10G001400"
Ledus.C10	AUGUSTUS	CDS	142673	143346	0.3	+	2	transcript_id "Ledus.C10G001400.t1"; gene_id "Ledus.C10G001400"
Ledus.C10	AUGUSTUS	exon	142673	143346	.	+	.	transcript_id "Ledus.C10G001400.t1"; gene_id "Ledus.C10G001400"
Ledus.C10	AUGUSTUS	stop_codon	143347	143349	.	+	0	transcript_id "Ledus.C10G001400.t1"; gene_id "Ledus.C10G001400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9330.t1 is derived from g10360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6162534	6163007	.	+	.	Ledus.S3G080700
Ledus.S3	AUGUSTUS	transcript	6162534	6163007	.	+	.	transcript_id "Ledus.S3G080700.t1"; gene_id "Ledus.S3G080700"
Ledus.S3	AUGUSTUS	start_codon	6162534	6162536	.	+	0	transcript_id "Ledus.S3G080700.t1"; gene_id "Ledus.S3G080700"
Ledus.S3	AUGUSTUS	CDS	6162534	6162573	0.49	+	0	transcript_id "Ledus.S3G080700.t1"; gene_id "Ledus.S3G080700"
Ledus.S3	AUGUSTUS	exon	6162534	6162573	.	+	.	transcript_id "Ledus.S3G080700.t1"; gene_id "Ledus.S3G080700"
Ledus.S3	AUGUSTUS	intron	6162574	6162723	.	+	.	transcript_id "Ledus.S3G080700.t1"; gene_id "Ledus.S3G080700"
Ledus.S3	AUGUSTUS	CDS	6162724	6163007	0.99	+	2	transcript_id "Ledus.S3G080700.t1"; gene_id "Ledus.S3G080700"
Ledus.S3	AUGUSTUS	exon	6162724	6163007	.	+	.	transcript_id "Ledus.S3G080700.t1"; gene_id "Ledus.S3G080700"
Ledus.S3	AUGUSTUS	stop_codon	6163008	6163010	.	+	0	transcript_id "Ledus.S3G080700.t1"; gene_id "Ledus.S3G080700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12369.t1 is derived from g5990.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11465125	11467502	.	+	.	Ledus.S4G152500
Ledus.S4	AUGUSTUS	transcript	11465125	11467502	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	start_codon	11465125	11465127	.	+	0	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	CDS	11465125	11465375	0.77	+	0	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	exon	11465125	11465375	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	intron	11465376	11465465	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	CDS	11465466	11465608	0.99	+	1	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	exon	11465466	11465608	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	intron	11465609	11465709	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	CDS	11465710	11466095	0.99	+	2	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	exon	11465710	11466095	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	intron	11466096	11466200	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	CDS	11466201	11466500	1	+	0	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	exon	11466201	11466500	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	intron	11466501	11466598	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	CDS	11466599	11466685	1	+	0	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	exon	11466599	11466685	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	intron	11466686	11466792	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	CDS	11466793	11466916	1	+	0	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	exon	11466793	11466916	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	intron	11466917	11467028	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	CDS	11467029	11467192	1	+	2	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	exon	11467029	11467192	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	intron	11467193	11467283	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	CDS	11467284	11467502	0.85	+	0	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	exon	11467284	11467502	.	+	.	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
Ledus.S4	AUGUSTUS	stop_codon	11467503	11467505	.	+	0	transcript_id "Ledus.S4G152500.t1"; gene_id "Ledus.S4G152500"
# This transcript jg3418.t2 is derived from g853.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3419.t1 is derived from g854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8171381	8172087	.	-	.	Ledus.S1G084000
Ledus.S1	AUGUSTUS	transcript	8171381	8172087	.	-	.	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	stop_codon	8171378	8171380	.	-	0	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	CDS	8171381	8171495	1	-	1	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	exon	8171381	8171495	.	-	.	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	intron	8171496	8171689	.	-	.	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	CDS	8171690	8171759	1	-	2	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	exon	8171690	8171759	.	-	.	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	intron	8171760	8171840	.	-	.	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	CDS	8171841	8171848	0.66	-	1	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	exon	8171841	8171848	.	-	.	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	intron	8171849	8172073	.	-	.	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	CDS	8172074	8172087	0.51	-	0	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	exon	8172074	8172087	.	-	.	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
Ledus.S1	AUGUSTUS	start_codon	8172085	8172087	.	-	0	transcript_id "Ledus.S1G084000.t1"; gene_id "Ledus.S1G084000"
# This transcript jg3852.t2 is derived from g1288.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3852.t3 is derived from g1288.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3853.t1 is derived from g1289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13186083	13189742	.	-	.	Ledus.S1G127400
Ledus.S1	AUGUSTUS	transcript	13186083	13189742	.	-	.	transcript_id "Ledus.S1G127400.t1"; gene_id "Ledus.S1G127400"
Ledus.S1	AUGUSTUS	stop_codon	13186080	13186082	.	-	0	transcript_id "Ledus.S1G127400.t1"; gene_id "Ledus.S1G127400"
Ledus.S1	AUGUSTUS	CDS	13186083	13189742	0.91	-	0	transcript_id "Ledus.S1G127400.t1"; gene_id "Ledus.S1G127400"
Ledus.S1	AUGUSTUS	exon	13186083	13189742	.	-	.	transcript_id "Ledus.S1G127400.t1"; gene_id "Ledus.S1G127400"
Ledus.S1	AUGUSTUS	start_codon	13189740	13189742	.	-	0	transcript_id "Ledus.S1G127400.t1"; gene_id "Ledus.S1G127400"
Ledus.S1	AUGUSTUS	transcript	13187453	13189742	.	-	.	transcript_id "Ledus.S1G127400.t2"; gene_id "Ledus.S1G127400"
Ledus.S1	AUGUSTUS	stop_codon	13187450	13187452	.	-	0	transcript_id "Ledus.S1G127400.t2"; gene_id "Ledus.S1G127400"
Ledus.S1	AUGUSTUS	CDS	13187453	13187527	0.41	-	0	transcript_id "Ledus.S1G127400.t2"; gene_id "Ledus.S1G127400"
Ledus.S1	AUGUSTUS	exon	13187453	13187527	.	-	.	transcript_id "Ledus.S1G127400.t2"; gene_id "Ledus.S1G127400"
Ledus.S1	AUGUSTUS	intron	13187528	13187639	.	-	.	transcript_id "Ledus.S1G127400.t2"; gene_id "Ledus.S1G127400"
Ledus.S1	AUGUSTUS	CDS	13187640	13189742	0.36	-	0	transcript_id "Ledus.S1G127400.t2"; gene_id "Ledus.S1G127400"
Ledus.S1	AUGUSTUS	exon	13187640	13189742	.	-	.	transcript_id "Ledus.S1G127400.t2"; gene_id "Ledus.S1G127400"
Ledus.S1	AUGUSTUS	start_codon	13189740	13189742	.	-	0	transcript_id "Ledus.S1G127400.t2"; gene_id "Ledus.S1G127400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4271.t1 is derived from g1707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15890590	15892127	.	-	.	Ledus.S1G169200
Ledus.S1	AUGUSTUS	transcript	15890590	15892127	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	stop_codon	15890587	15890589	.	-	0	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	CDS	15890590	15890691	0.97	-	0	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	exon	15890590	15890691	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	intron	15890692	15890783	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	CDS	15890784	15890898	1	-	1	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	exon	15890784	15890898	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	intron	15890899	15890986	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	CDS	15890987	15891151	1	-	1	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	exon	15890987	15891151	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	intron	15891152	15891337	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	CDS	15891338	15891363	1	-	0	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	exon	15891338	15891363	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	intron	15891364	15891465	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	CDS	15891466	15891542	0.95	-	2	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	exon	15891466	15891542	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	intron	15891543	15891635	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	CDS	15891636	15891669	1	-	0	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	exon	15891636	15891669	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	intron	15891670	15891829	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	CDS	15891830	15891929	1	-	1	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	exon	15891830	15891929	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	intron	15891930	15892014	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	CDS	15892015	15892127	0.89	-	0	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	exon	15892015	15892127	.	-	.	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
Ledus.S1	AUGUSTUS	start_codon	15892125	15892127	.	-	0	transcript_id "Ledus.S1G169200.t1"; gene_id "Ledus.S1G169200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7256.t1 is derived from g11927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	509357	510550	.	+	.	Ledus.S5G003400
Ledus.S5	AUGUSTUS	transcript	509357	510550	.	+	.	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	start_codon	509357	509359	.	+	0	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	CDS	509357	509689	1	+	0	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	exon	509357	509689	.	+	.	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	intron	509690	510088	.	+	.	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	CDS	510089	510199	1	+	0	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	exon	510089	510199	.	+	.	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	intron	510200	510298	.	+	.	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	CDS	510299	510379	1	+	0	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	exon	510299	510379	.	+	.	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	intron	510380	510463	.	+	.	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	CDS	510464	510550	1	+	0	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	exon	510464	510550	.	+	.	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
Ledus.S5	AUGUSTUS	stop_codon	510551	510553	.	+	0	transcript_id "Ledus.S5G003400.t1"; gene_id "Ledus.S5G003400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12779.t1 is derived from g6401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14446438	14448226	.	+	.	Ledus.S4G193500
Ledus.S4	AUGUSTUS	transcript	14446438	14448226	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	start_codon	14446438	14446440	.	+	0	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	CDS	14446438	14446440	1	+	0	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	exon	14446438	14446440	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	intron	14446441	14446576	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	CDS	14446577	14446646	1	+	0	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	exon	14446577	14446646	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	intron	14446647	14446722	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	CDS	14446723	14446814	1	+	2	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	exon	14446723	14446814	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	intron	14446815	14446946	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	CDS	14446947	14447073	1	+	0	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	exon	14446947	14447073	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	intron	14447074	14447178	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	CDS	14447179	14447258	1	+	2	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	exon	14447179	14447258	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	intron	14447259	14447345	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	CDS	14447346	14447462	1	+	0	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	exon	14447346	14447462	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	intron	14447463	14447610	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	CDS	14447611	14447745	1	+	0	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	exon	14447611	14447745	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	intron	14447746	14447857	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	CDS	14447858	14448027	1	+	0	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	exon	14447858	14448027	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	intron	14448028	14448150	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	CDS	14448151	14448226	0.65	+	1	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	exon	14448151	14448226	.	+	.	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
Ledus.S4	AUGUSTUS	stop_codon	14448227	14448229	.	+	0	transcript_id "Ledus.S4G193500.t1"; gene_id "Ledus.S4G193500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8872.t1 is derived from g9902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2617878	2619294	.	+	.	Ledus.S3G034900
Ledus.S3	AUGUSTUS	transcript	2617878	2619294	.	+	.	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	start_codon	2617878	2617880	.	+	0	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	CDS	2617878	2617919	1	+	0	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	exon	2617878	2617919	.	+	.	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	intron	2617920	2618038	.	+	.	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	CDS	2618039	2618430	1	+	0	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	exon	2618039	2618430	.	+	.	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	intron	2618431	2618538	.	+	.	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	CDS	2618539	2618869	0.56	+	1	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	exon	2618539	2618869	.	+	.	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	intron	2618870	2618964	.	+	.	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	CDS	2618965	2619294	1	+	0	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	exon	2618965	2619294	.	+	.	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
Ledus.S3	AUGUSTUS	stop_codon	2619295	2619297	.	+	0	transcript_id "Ledus.S3G034900.t1"; gene_id "Ledus.S3G034900"
# This transcript jg7951.t2 is derived from g12622.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7952.t1 is derived from g12623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8101773	8102233	.	-	.	Ledus.S5G073000
Ledus.S5	AUGUSTUS	transcript	8101773	8102233	.	-	.	transcript_id "Ledus.S5G073000.t1"; gene_id "Ledus.S5G073000"
Ledus.S5	AUGUSTUS	stop_codon	8101770	8101772	.	-	0	transcript_id "Ledus.S5G073000.t1"; gene_id "Ledus.S5G073000"
Ledus.S5	AUGUSTUS	CDS	8101773	8101853	0.41	-	0	transcript_id "Ledus.S5G073000.t1"; gene_id "Ledus.S5G073000"
Ledus.S5	AUGUSTUS	exon	8101773	8101853	.	-	.	transcript_id "Ledus.S5G073000.t1"; gene_id "Ledus.S5G073000"
Ledus.S5	AUGUSTUS	intron	8101854	8102038	.	-	.	transcript_id "Ledus.S5G073000.t1"; gene_id "Ledus.S5G073000"
Ledus.S5	AUGUSTUS	CDS	8102039	8102233	0.59	-	0	transcript_id "Ledus.S5G073000.t1"; gene_id "Ledus.S5G073000"
Ledus.S5	AUGUSTUS	exon	8102039	8102233	.	-	.	transcript_id "Ledus.S5G073000.t1"; gene_id "Ledus.S5G073000"
Ledus.S5	AUGUSTUS	start_codon	8102231	8102233	.	-	0	transcript_id "Ledus.S5G073000.t1"; gene_id "Ledus.S5G073000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3431.t1 is derived from g866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8296590	8297717	.	-	.	Ledus.S1G085200
Ledus.S1	AUGUSTUS	transcript	8296590	8297717	.	-	.	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	stop_codon	8296587	8296589	.	-	0	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	CDS	8296590	8296731	1	-	1	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	exon	8296590	8296731	.	-	.	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	intron	8296732	8296804	.	-	.	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	CDS	8296805	8296881	1	-	0	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	exon	8296805	8296881	.	-	.	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	intron	8296882	8297001	.	-	.	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	CDS	8297002	8297211	1	-	0	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	exon	8297002	8297211	.	-	.	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	intron	8297212	8297507	.	-	.	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	CDS	8297508	8297717	0.99	-	0	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	exon	8297508	8297717	.	-	.	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
Ledus.S1	AUGUSTUS	start_codon	8297715	8297717	.	-	0	transcript_id "Ledus.S1G085200.t1"; gene_id "Ledus.S1G085200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg538.t1 is derived from g7399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3103389	3104907	.	+	.	Ledus.S2G042000
Ledus.S2	AUGUSTUS	transcript	3103389	3104907	.	+	.	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	start_codon	3103389	3103391	.	+	0	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	CDS	3103389	3103783	0.86	+	0	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	exon	3103389	3103783	.	+	.	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	intron	3103784	3103865	.	+	.	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	CDS	3103866	3104058	1	+	1	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	exon	3103866	3104058	.	+	.	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	intron	3104059	3104147	.	+	.	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	CDS	3104148	3104354	1	+	0	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	exon	3104148	3104354	.	+	.	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	intron	3104355	3104440	.	+	.	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	CDS	3104441	3104676	1	+	0	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	exon	3104441	3104676	.	+	.	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	intron	3104677	3104759	.	+	.	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	CDS	3104760	3104907	1	+	1	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	exon	3104760	3104907	.	+	.	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
Ledus.S2	AUGUSTUS	stop_codon	3104908	3104910	.	+	0	transcript_id "Ledus.S2G042000.t1"; gene_id "Ledus.S2G042000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5975.t1 is derived from g3418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28117417	28118560	.	+	.	Ledus.S1G339600
Ledus.S1	AUGUSTUS	transcript	28117417	28118560	.	+	.	transcript_id "Ledus.S1G339600.t1"; gene_id "Ledus.S1G339600"
Ledus.S1	AUGUSTUS	start_codon	28117417	28117419	.	+	0	transcript_id "Ledus.S1G339600.t1"; gene_id "Ledus.S1G339600"
Ledus.S1	AUGUSTUS	CDS	28117417	28117626	1	+	0	transcript_id "Ledus.S1G339600.t1"; gene_id "Ledus.S1G339600"
Ledus.S1	AUGUSTUS	exon	28117417	28117626	.	+	.	transcript_id "Ledus.S1G339600.t1"; gene_id "Ledus.S1G339600"
Ledus.S1	AUGUSTUS	intron	28117627	28117717	.	+	.	transcript_id "Ledus.S1G339600.t1"; gene_id "Ledus.S1G339600"
Ledus.S1	AUGUSTUS	CDS	28117718	28118051	0.67	+	0	transcript_id "Ledus.S1G339600.t1"; gene_id "Ledus.S1G339600"
Ledus.S1	AUGUSTUS	exon	28117718	28118051	.	+	.	transcript_id "Ledus.S1G339600.t1"; gene_id "Ledus.S1G339600"
Ledus.S1	AUGUSTUS	intron	28118052	28118432	.	+	.	transcript_id "Ledus.S1G339600.t1"; gene_id "Ledus.S1G339600"
Ledus.S1	AUGUSTUS	CDS	28118433	28118560	0.5	+	2	transcript_id "Ledus.S1G339600.t1"; gene_id "Ledus.S1G339600"
Ledus.S1	AUGUSTUS	exon	28118433	28118560	.	+	.	transcript_id "Ledus.S1G339600.t1"; gene_id "Ledus.S1G339600"
Ledus.S1	AUGUSTUS	stop_codon	28118561	28118563	.	+	0	transcript_id "Ledus.S1G339600.t1"; gene_id "Ledus.S1G339600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8598.t1 is derived from g9628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	504074	504796	.	+	.	Ledus.S3G007500
Ledus.S3	AUGUSTUS	transcript	504074	504796	.	+	.	transcript_id "Ledus.S3G007500.t1"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	start_codon	504074	504076	.	+	0	transcript_id "Ledus.S3G007500.t1"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	CDS	504074	504218	0.69	+	0	transcript_id "Ledus.S3G007500.t1"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	exon	504074	504218	.	+	.	transcript_id "Ledus.S3G007500.t1"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	intron	504219	504353	.	+	.	transcript_id "Ledus.S3G007500.t1"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	CDS	504354	504581	1	+	2	transcript_id "Ledus.S3G007500.t1"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	exon	504354	504581	.	+	.	transcript_id "Ledus.S3G007500.t1"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	intron	504582	504662	.	+	.	transcript_id "Ledus.S3G007500.t1"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	CDS	504663	504796	1	+	2	transcript_id "Ledus.S3G007500.t1"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	exon	504663	504796	.	+	.	transcript_id "Ledus.S3G007500.t1"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	stop_codon	504797	504799	.	+	0	transcript_id "Ledus.S3G007500.t1"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	transcript	504074	504796	.	+	.	transcript_id "Ledus.S3G007500.t2"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	start_codon	504074	504076	.	+	0	transcript_id "Ledus.S3G007500.t2"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	CDS	504074	504218	0.67	+	0	transcript_id "Ledus.S3G007500.t2"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	exon	504074	504218	.	+	.	transcript_id "Ledus.S3G007500.t2"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	intron	504219	504356	.	+	.	transcript_id "Ledus.S3G007500.t2"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	CDS	504357	504581	1	+	2	transcript_id "Ledus.S3G007500.t2"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	exon	504357	504581	.	+	.	transcript_id "Ledus.S3G007500.t2"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	intron	504582	504662	.	+	.	transcript_id "Ledus.S3G007500.t2"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	CDS	504663	504796	1	+	2	transcript_id "Ledus.S3G007500.t2"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	exon	504663	504796	.	+	.	transcript_id "Ledus.S3G007500.t2"; gene_id "Ledus.S3G007500"
Ledus.S3	AUGUSTUS	stop_codon	504797	504799	.	+	0	transcript_id "Ledus.S3G007500.t2"; gene_id "Ledus.S3G007500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2582.t1 is derived from g15.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	106419	107602	.	+	.	Ledus.S1G000300
Ledus.S1	AUGUSTUS	transcript	106419	107602	.	+	.	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	start_codon	106419	106421	.	+	0	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	CDS	106419	106448	0.42	+	0	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	exon	106419	106448	.	+	.	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	intron	106449	106763	.	+	.	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	CDS	106764	106819	0.66	+	0	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	exon	106764	106819	.	+	.	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	intron	106820	106907	.	+	.	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	CDS	106908	107021	1	+	1	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	exon	106908	107021	.	+	.	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	intron	107022	107107	.	+	.	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	CDS	107108	107165	1	+	1	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	exon	107108	107165	.	+	.	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	intron	107166	107377	.	+	.	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	CDS	107378	107602	0.91	+	0	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	exon	107378	107602	.	+	.	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
Ledus.S1	AUGUSTUS	stop_codon	107603	107605	.	+	0	transcript_id "Ledus.S1G000300.t1"; gene_id "Ledus.S1G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2784.t1 is derived from g218.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3695749	3698245	.	-	.	Ledus.S1G020500
Ledus.S1	AUGUSTUS	transcript	3695749	3698245	.	-	.	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	stop_codon	3695746	3695748	.	-	0	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	CDS	3695749	3696018	0.81	-	0	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	exon	3695749	3696018	.	-	.	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	intron	3696019	3696136	.	-	.	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	CDS	3696137	3696268	0.81	-	0	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	exon	3696137	3696268	.	-	.	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	intron	3696269	3696371	.	-	.	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	CDS	3696372	3696515	0.98	-	0	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	exon	3696372	3696515	.	-	.	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	intron	3696516	3696728	.	-	.	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	CDS	3696729	3696968	0.99	-	0	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	exon	3696729	3696968	.	-	.	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	intron	3696969	3697915	.	-	.	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	CDS	3697916	3698245	0.61	-	0	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	exon	3697916	3698245	.	-	.	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
Ledus.S1	AUGUSTUS	start_codon	3698243	3698245	.	-	0	transcript_id "Ledus.S1G020500.t1"; gene_id "Ledus.S1G020500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2375.t1 is derived from g9238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17735189	17735455	.	+	.	Ledus.S2G225700
Ledus.S2	AUGUSTUS	transcript	17735189	17735455	.	+	.	transcript_id "Ledus.S2G225700.t1"; gene_id "Ledus.S2G225700"
Ledus.S2	AUGUSTUS	start_codon	17735189	17735191	.	+	0	transcript_id "Ledus.S2G225700.t1"; gene_id "Ledus.S2G225700"
Ledus.S2	AUGUSTUS	CDS	17735189	17735455	0.65	+	0	transcript_id "Ledus.S2G225700.t1"; gene_id "Ledus.S2G225700"
Ledus.S2	AUGUSTUS	exon	17735189	17735455	.	+	.	transcript_id "Ledus.S2G225700.t1"; gene_id "Ledus.S2G225700"
Ledus.S2	AUGUSTUS	stop_codon	17735456	17735458	.	+	0	transcript_id "Ledus.S2G225700.t1"; gene_id "Ledus.S2G225700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1652.t1 is derived from g8513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11689684	11689893	.	-	.	Ledus.S2G153400
Ledus.S2	AUGUSTUS	transcript	11689684	11689893	.	-	.	transcript_id "Ledus.S2G153400.t1"; gene_id "Ledus.S2G153400"
Ledus.S2	AUGUSTUS	stop_codon	11689681	11689683	.	-	0	transcript_id "Ledus.S2G153400.t1"; gene_id "Ledus.S2G153400"
Ledus.S2	AUGUSTUS	CDS	11689684	11689893	0.67	-	0	transcript_id "Ledus.S2G153400.t1"; gene_id "Ledus.S2G153400"
Ledus.S2	AUGUSTUS	exon	11689684	11689893	.	-	.	transcript_id "Ledus.S2G153400.t1"; gene_id "Ledus.S2G153400"
Ledus.S2	AUGUSTUS	start_codon	11689891	11689893	.	-	0	transcript_id "Ledus.S2G153400.t1"; gene_id "Ledus.S2G153400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2486.t1 is derived from g9349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18441621	18443806	.	-	.	Ledus.S2G236800
Ledus.S2	AUGUSTUS	transcript	18441621	18443806	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	stop_codon	18441618	18441620	.	-	0	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	CDS	18441621	18441983	0.99	-	0	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	exon	18441621	18441983	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	intron	18441984	18442076	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	CDS	18442077	18442280	1	-	0	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	exon	18442077	18442280	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	intron	18442281	18442358	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	CDS	18442359	18442428	1	-	1	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	exon	18442359	18442428	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	intron	18442429	18442525	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	CDS	18442526	18442585	1	-	1	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	exon	18442526	18442585	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	intron	18442586	18442677	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	CDS	18442678	18442769	1	-	0	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	exon	18442678	18442769	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	intron	18442770	18442833	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	CDS	18442834	18443016	0.96	-	0	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	exon	18442834	18443016	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	intron	18443017	18443131	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	CDS	18443132	18443806	0.95	-	0	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	exon	18443132	18443806	.	-	.	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
Ledus.S2	AUGUSTUS	start_codon	18443804	18443806	.	-	0	transcript_id "Ledus.S2G236800.t1"; gene_id "Ledus.S2G236800"
# This transcript jg3350.t2 is derived from g785.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3351.t1 is derived from g786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7765248	7765959	.	-	.	Ledus.S1G077200
Ledus.S1	AUGUSTUS	transcript	7765248	7765959	.	-	.	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	stop_codon	7765245	7765247	.	-	0	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	CDS	7765248	7765298	0.93	-	0	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	exon	7765248	7765298	.	-	.	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	intron	7765299	7765408	.	-	.	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	CDS	7765409	7765500	0.95	-	2	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	exon	7765409	7765500	.	-	.	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	intron	7765501	7765576	.	-	.	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	CDS	7765577	7765700	1	-	0	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	exon	7765577	7765700	.	-	.	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	intron	7765701	7765890	.	-	.	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	CDS	7765891	7765959	0.97	-	0	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	exon	7765891	7765959	.	-	.	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
Ledus.S1	AUGUSTUS	start_codon	7765957	7765959	.	-	0	transcript_id "Ledus.S1G077200.t1"; gene_id "Ledus.S1G077200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12648.t1 is derived from g6270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13603369	13606319	.	+	.	Ledus.S4G180400
Ledus.S4	AUGUSTUS	transcript	13603369	13606319	.	+	.	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	start_codon	13603369	13603371	.	+	0	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	CDS	13603369	13603536	0.45	+	0	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	exon	13603369	13603536	.	+	.	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	intron	13603537	13603686	.	+	.	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	CDS	13603687	13605420	1	+	0	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	exon	13603687	13605420	.	+	.	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	intron	13605421	13605574	.	+	.	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	CDS	13605575	13605856	0.92	+	0	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	exon	13605575	13605856	.	+	.	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	intron	13605857	13605965	.	+	.	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	CDS	13605966	13606319	0.89	+	0	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	exon	13605966	13606319	.	+	.	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
Ledus.S4	AUGUSTUS	stop_codon	13606320	13606322	.	+	0	transcript_id "Ledus.S4G180400.t1"; gene_id "Ledus.S4G180400"
# This transcript jg5551.t2 is derived from g2990.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5552.t1 is derived from g2991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25082279	25083128	.	-	.	Ledus.S1G297300
Ledus.S1	AUGUSTUS	transcript	25082279	25083128	.	-	.	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	stop_codon	25082276	25082278	.	-	0	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	CDS	25082279	25082380	1	-	0	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	exon	25082279	25082380	.	-	.	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	intron	25082381	25082480	.	-	.	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	CDS	25082481	25082549	1	-	0	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	exon	25082481	25082549	.	-	.	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	intron	25082550	25082637	.	-	.	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	CDS	25082638	25082716	1	-	1	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	exon	25082638	25082716	.	-	.	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	intron	25082717	25082802	.	-	.	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	CDS	25082803	25083128	0.93	-	0	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	exon	25082803	25083128	.	-	.	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
Ledus.S1	AUGUSTUS	start_codon	25083126	25083128	.	-	0	transcript_id "Ledus.S1G297300.t1"; gene_id "Ledus.S1G297300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9540.t1 is derived from g10570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7640312	7641799	.	+	.	Ledus.S3G101700
Ledus.S3	AUGUSTUS	transcript	7640312	7641799	.	+	.	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	start_codon	7640312	7640314	.	+	0	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	CDS	7640312	7640407	0.31	+	0	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	exon	7640312	7640407	.	+	.	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	intron	7640408	7640510	.	+	.	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	CDS	7640511	7640574	0.38	+	0	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	exon	7640511	7640574	.	+	.	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	intron	7640575	7640758	.	+	.	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	CDS	7640759	7640883	1	+	2	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	exon	7640759	7640883	.	+	.	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	intron	7640884	7640983	.	+	.	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	CDS	7640984	7641799	1	+	0	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	exon	7640984	7641799	.	+	.	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
Ledus.S3	AUGUSTUS	stop_codon	7641800	7641802	.	+	0	transcript_id "Ledus.S3G101700.t1"; gene_id "Ledus.S3G101700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7747.t1 is derived from g12418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5991799	5999578	.	+	.	Ledus.S5G052500
Ledus.S5	AUGUSTUS	transcript	5991799	5999578	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	start_codon	5991799	5991801	.	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5991799	5991837	0.61	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5991799	5991837	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5991838	5992006	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5992007	5992303	0.66	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5992007	5992303	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5992304	5992923	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5992924	5993047	1	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5992924	5993047	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5993048	5993228	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5993229	5993315	1	+	2	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5993229	5993315	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5993316	5993433	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5993434	5993613	1	+	2	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5993434	5993613	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5993614	5993697	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5993698	5993804	1	+	2	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5993698	5993804	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5993805	5993965	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5993966	5994097	1	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5993966	5994097	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5994098	5994247	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5994248	5994408	1	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5994248	5994408	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5994409	5994618	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5994619	5994780	1	+	1	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5994619	5994780	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5994781	5994895	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5994896	5994987	1	+	1	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5994896	5994987	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5994988	5995225	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5995226	5995377	1	+	2	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5995226	5995377	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5995378	5995495	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5995496	5995699	0.99	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5995496	5995699	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5995700	5995814	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5995815	5995961	0.62	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5995815	5995961	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5995962	5996074	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5996075	5996269	1	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5996075	5996269	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5996270	5996404	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5996405	5996500	1	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5996405	5996500	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5996501	5996598	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5996599	5996657	1	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5996599	5996657	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5996658	5996833	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5996834	5997053	1	+	1	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5996834	5997053	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5997054	5997147	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5997148	5997339	1	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5997148	5997339	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5997340	5997479	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5997480	5997710	0.99	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5997480	5997710	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5997711	5997858	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5997859	5998230	1	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5997859	5998230	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5998231	5998334	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5998335	5998433	1	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5998335	5998433	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5998434	5998533	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5998534	5998674	1	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5998534	5998674	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5998675	5998805	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5998806	5998964	1	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5998806	5998964	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	intron	5998965	5999047	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	CDS	5999048	5999578	0.99	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	exon	5999048	5999578	.	+	.	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
Ledus.S5	AUGUSTUS	stop_codon	5999579	5999581	.	+	0	transcript_id "Ledus.S5G052500.t1"; gene_id "Ledus.S5G052500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6673.t1 is derived from g4116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33063058	33064748	.	-	.	Ledus.S1G409400
Ledus.S1	AUGUSTUS	transcript	33063058	33064748	.	-	.	transcript_id "Ledus.S1G409400.t1"; gene_id "Ledus.S1G409400"
Ledus.S1	AUGUSTUS	stop_codon	33063055	33063057	.	-	0	transcript_id "Ledus.S1G409400.t1"; gene_id "Ledus.S1G409400"
Ledus.S1	AUGUSTUS	CDS	33063058	33064160	1	-	2	transcript_id "Ledus.S1G409400.t1"; gene_id "Ledus.S1G409400"
Ledus.S1	AUGUSTUS	exon	33063058	33064160	.	-	.	transcript_id "Ledus.S1G409400.t1"; gene_id "Ledus.S1G409400"
Ledus.S1	AUGUSTUS	intron	33064161	33064364	.	-	.	transcript_id "Ledus.S1G409400.t1"; gene_id "Ledus.S1G409400"
Ledus.S1	AUGUSTUS	CDS	33064365	33064464	1	-	0	transcript_id "Ledus.S1G409400.t1"; gene_id "Ledus.S1G409400"
Ledus.S1	AUGUSTUS	exon	33064365	33064464	.	-	.	transcript_id "Ledus.S1G409400.t1"; gene_id "Ledus.S1G409400"
Ledus.S1	AUGUSTUS	intron	33064465	33064553	.	-	.	transcript_id "Ledus.S1G409400.t1"; gene_id "Ledus.S1G409400"
Ledus.S1	AUGUSTUS	CDS	33064554	33064748	0.89	-	0	transcript_id "Ledus.S1G409400.t1"; gene_id "Ledus.S1G409400"
Ledus.S1	AUGUSTUS	exon	33064554	33064748	.	-	.	transcript_id "Ledus.S1G409400.t1"; gene_id "Ledus.S1G409400"
Ledus.S1	AUGUSTUS	start_codon	33064746	33064748	.	-	0	transcript_id "Ledus.S1G409400.t1"; gene_id "Ledus.S1G409400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8675.t1 is derived from g9705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1320986	1321288	.	-	.	Ledus.S3G015200
Ledus.S3	AUGUSTUS	transcript	1320986	1321288	.	-	.	transcript_id "Ledus.S3G015200.t1"; gene_id "Ledus.S3G015200"
Ledus.S3	AUGUSTUS	stop_codon	1320983	1320985	.	-	0	transcript_id "Ledus.S3G015200.t1"; gene_id "Ledus.S3G015200"
Ledus.S3	AUGUSTUS	CDS	1320986	1321288	0.51	-	0	transcript_id "Ledus.S3G015200.t1"; gene_id "Ledus.S3G015200"
Ledus.S3	AUGUSTUS	exon	1320986	1321288	.	-	.	transcript_id "Ledus.S3G015200.t1"; gene_id "Ledus.S3G015200"
Ledus.S3	AUGUSTUS	start_codon	1321286	1321288	.	-	0	transcript_id "Ledus.S3G015200.t1"; gene_id "Ledus.S3G015200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7913.t1 is derived from g12584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7792276	7793514	.	+	.	Ledus.S5G069100
Ledus.S5	AUGUSTUS	transcript	7792276	7793514	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	start_codon	7792276	7792278	.	+	0	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	CDS	7792276	7792410	0.74	+	0	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	exon	7792276	7792410	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	intron	7792411	7792505	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	CDS	7792506	7792627	1	+	0	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	exon	7792506	7792627	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	intron	7792628	7792696	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	CDS	7792697	7792898	1	+	1	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	exon	7792697	7792898	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	intron	7792899	7792993	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	CDS	7792994	7793133	1	+	0	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	exon	7792994	7793133	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	intron	7793134	7793226	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	CDS	7793227	7793270	0.79	+	1	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	exon	7793227	7793270	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	intron	7793271	7793352	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	CDS	7793353	7793365	1	+	2	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	exon	7793353	7793365	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	intron	7793366	7793462	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	CDS	7793463	7793514	1	+	1	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	exon	7793463	7793514	.	+	.	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
Ledus.S5	AUGUSTUS	stop_codon	7793515	7793517	.	+	0	transcript_id "Ledus.S5G069100.t1"; gene_id "Ledus.S5G069100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11651.t1 is derived from g5270.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5737833	5739039	.	+	.	Ledus.S4G080700
Ledus.S4	AUGUSTUS	transcript	5737833	5739039	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	start_codon	5737833	5737835	.	+	0	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5737833	5737973	0.68	+	0	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5737833	5737973	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	intron	5737974	5738065	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5738066	5738231	1	+	0	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5738066	5738231	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	intron	5738232	5738303	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5738304	5738356	1	+	2	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5738304	5738356	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	intron	5738357	5738442	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5738443	5738505	1	+	0	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5738443	5738505	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	intron	5738506	5738583	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5738584	5738634	1	+	0	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5738584	5738634	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	intron	5738635	5738711	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5738712	5738829	1	+	0	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5738712	5738829	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	intron	5738830	5738929	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5738930	5739039	0.97	+	2	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5738930	5739039	.	+	.	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	stop_codon	5739040	5739042	.	+	0	transcript_id "Ledus.S4G080700.t1"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	transcript	5737833	5739039	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	start_codon	5737833	5737835	.	+	0	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5737833	5737973	0.61	+	0	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5737833	5737973	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	intron	5737974	5738065	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5738066	5738231	1	+	0	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5738066	5738231	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	intron	5738232	5738303	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5738304	5738356	1	+	2	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5738304	5738356	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	intron	5738357	5738442	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5738443	5738505	1	+	0	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5738443	5738505	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	intron	5738506	5738583	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5738584	5738634	1	+	0	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5738584	5738634	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	intron	5738635	5738732	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5738733	5738829	0.69	+	0	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5738733	5738829	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	intron	5738830	5738929	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	CDS	5738930	5739039	0.99	+	2	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	exon	5738930	5739039	.	+	.	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
Ledus.S4	AUGUSTUS	stop_codon	5739040	5739042	.	+	0	transcript_id "Ledus.S4G080700.t2"; gene_id "Ledus.S4G080700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12767.t1 is derived from g6389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14368760	14372686	.	+	.	Ledus.S4G192300
Ledus.S4	AUGUSTUS	transcript	14368760	14372686	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	start_codon	14368760	14368762	.	+	0	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14368760	14369313	0.83	+	0	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14368760	14369313	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	intron	14369314	14369680	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14369681	14369922	1	+	1	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14369681	14369922	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	intron	14369923	14370012	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14370013	14370104	1	+	2	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14370013	14370104	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	intron	14370105	14370456	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14370457	14370603	1	+	0	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14370457	14370603	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	intron	14370604	14370693	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14370694	14370789	1	+	0	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14370694	14370789	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	intron	14370790	14371991	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14371992	14372117	1	+	0	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14371992	14372117	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	intron	14372118	14372680	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14372681	14372686	1	+	0	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14372681	14372686	.	+	.	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	stop_codon	14372687	14372689	.	+	0	transcript_id "Ledus.S4G192300.t1"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	transcript	14368760	14372686	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	start_codon	14368760	14368762	.	+	0	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14368760	14369313	0.8	+	0	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14368760	14369313	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	intron	14369314	14369680	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14369681	14369922	1	+	1	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14369681	14369922	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	intron	14369923	14370012	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14370013	14370104	1	+	2	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14370013	14370104	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	intron	14370105	14370417	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14370418	14370603	1	+	0	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14370418	14370603	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	intron	14370604	14370693	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14370694	14370789	1	+	0	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14370694	14370789	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	intron	14370790	14371991	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14371992	14372117	1	+	0	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14371992	14372117	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	intron	14372118	14372680	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	CDS	14372681	14372686	1	+	0	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	exon	14372681	14372686	.	+	.	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
Ledus.S4	AUGUSTUS	stop_codon	14372687	14372689	.	+	0	transcript_id "Ledus.S4G192300.t2"; gene_id "Ledus.S4G192300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11568.t1 is derived from g5186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5324036	5325314	.	+	.	Ledus.S4G072400
Ledus.S4	AUGUSTUS	transcript	5324036	5325314	.	+	.	transcript_id "Ledus.S4G072400.t1"; gene_id "Ledus.S4G072400"
Ledus.S4	AUGUSTUS	start_codon	5324036	5324038	.	+	0	transcript_id "Ledus.S4G072400.t1"; gene_id "Ledus.S4G072400"
Ledus.S4	AUGUSTUS	CDS	5324036	5324093	0.9	+	0	transcript_id "Ledus.S4G072400.t1"; gene_id "Ledus.S4G072400"
Ledus.S4	AUGUSTUS	exon	5324036	5324093	.	+	.	transcript_id "Ledus.S4G072400.t1"; gene_id "Ledus.S4G072400"
Ledus.S4	AUGUSTUS	intron	5324094	5324268	.	+	.	transcript_id "Ledus.S4G072400.t1"; gene_id "Ledus.S4G072400"
Ledus.S4	AUGUSTUS	CDS	5324269	5325314	1	+	2	transcript_id "Ledus.S4G072400.t1"; gene_id "Ledus.S4G072400"
Ledus.S4	AUGUSTUS	exon	5324269	5325314	.	+	.	transcript_id "Ledus.S4G072400.t1"; gene_id "Ledus.S4G072400"
Ledus.S4	AUGUSTUS	stop_codon	5325315	5325317	.	+	0	transcript_id "Ledus.S4G072400.t1"; gene_id "Ledus.S4G072400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11987.t1 is derived from g5606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8311074	8311953	.	+	.	Ledus.S4G114300
Ledus.S4	AUGUSTUS	transcript	8311074	8311953	.	+	.	transcript_id "Ledus.S4G114300.t1"; gene_id "Ledus.S4G114300"
Ledus.S4	AUGUSTUS	start_codon	8311074	8311076	.	+	0	transcript_id "Ledus.S4G114300.t1"; gene_id "Ledus.S4G114300"
Ledus.S4	AUGUSTUS	CDS	8311074	8311222	1	+	0	transcript_id "Ledus.S4G114300.t1"; gene_id "Ledus.S4G114300"
Ledus.S4	AUGUSTUS	exon	8311074	8311222	.	+	.	transcript_id "Ledus.S4G114300.t1"; gene_id "Ledus.S4G114300"
Ledus.S4	AUGUSTUS	intron	8311223	8311304	.	+	.	transcript_id "Ledus.S4G114300.t1"; gene_id "Ledus.S4G114300"
Ledus.S4	AUGUSTUS	CDS	8311305	8311953	1	+	1	transcript_id "Ledus.S4G114300.t1"; gene_id "Ledus.S4G114300"
Ledus.S4	AUGUSTUS	exon	8311305	8311953	.	+	.	transcript_id "Ledus.S4G114300.t1"; gene_id "Ledus.S4G114300"
Ledus.S4	AUGUSTUS	stop_codon	8311954	8311956	.	+	0	transcript_id "Ledus.S4G114300.t1"; gene_id "Ledus.S4G114300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2952.t1 is derived from g387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4840870	4841710	.	-	.	Ledus.S1G037300
Ledus.S1	AUGUSTUS	transcript	4840870	4841710	.	-	.	transcript_id "Ledus.S1G037300.t1"; gene_id "Ledus.S1G037300"
Ledus.S1	AUGUSTUS	stop_codon	4840867	4840869	.	-	0	transcript_id "Ledus.S1G037300.t1"; gene_id "Ledus.S1G037300"
Ledus.S1	AUGUSTUS	CDS	4840870	4840933	0.97	-	1	transcript_id "Ledus.S1G037300.t1"; gene_id "Ledus.S1G037300"
Ledus.S1	AUGUSTUS	exon	4840870	4840933	.	-	.	transcript_id "Ledus.S1G037300.t1"; gene_id "Ledus.S1G037300"
Ledus.S1	AUGUSTUS	intron	4840934	4841200	.	-	.	transcript_id "Ledus.S1G037300.t1"; gene_id "Ledus.S1G037300"
Ledus.S1	AUGUSTUS	CDS	4841201	4841429	0.01	-	2	transcript_id "Ledus.S1G037300.t1"; gene_id "Ledus.S1G037300"
Ledus.S1	AUGUSTUS	exon	4841201	4841429	.	-	.	transcript_id "Ledus.S1G037300.t1"; gene_id "Ledus.S1G037300"
Ledus.S1	AUGUSTUS	intron	4841430	4841526	.	-	.	transcript_id "Ledus.S1G037300.t1"; gene_id "Ledus.S1G037300"
Ledus.S1	AUGUSTUS	CDS	4841527	4841710	0.96	-	0	transcript_id "Ledus.S1G037300.t1"; gene_id "Ledus.S1G037300"
Ledus.S1	AUGUSTUS	exon	4841527	4841710	.	-	.	transcript_id "Ledus.S1G037300.t1"; gene_id "Ledus.S1G037300"
Ledus.S1	AUGUSTUS	start_codon	4841708	4841710	.	-	0	transcript_id "Ledus.S1G037300.t1"; gene_id "Ledus.S1G037300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8771.t1 is derived from g9801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1903433	1903927	.	-	.	Ledus.S3G024800
Ledus.S3	AUGUSTUS	transcript	1903433	1903927	.	-	.	transcript_id "Ledus.S3G024800.t1"; gene_id "Ledus.S3G024800"
Ledus.S3	AUGUSTUS	stop_codon	1903430	1903432	.	-	0	transcript_id "Ledus.S3G024800.t1"; gene_id "Ledus.S3G024800"
Ledus.S3	AUGUSTUS	CDS	1903433	1903927	0.71	-	0	transcript_id "Ledus.S3G024800.t1"; gene_id "Ledus.S3G024800"
Ledus.S3	AUGUSTUS	exon	1903433	1903927	.	-	.	transcript_id "Ledus.S3G024800.t1"; gene_id "Ledus.S3G024800"
Ledus.S3	AUGUSTUS	start_codon	1903925	1903927	.	-	0	transcript_id "Ledus.S3G024800.t1"; gene_id "Ledus.S3G024800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6195.t1 is derived from g3638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29553863	29554180	.	-	.	Ledus.S1G361600
Ledus.S1	AUGUSTUS	transcript	29553863	29554180	.	-	.	transcript_id "Ledus.S1G361600.t1"; gene_id "Ledus.S1G361600"
Ledus.S1	AUGUSTUS	stop_codon	29553860	29553862	.	-	0	transcript_id "Ledus.S1G361600.t1"; gene_id "Ledus.S1G361600"
Ledus.S1	AUGUSTUS	CDS	29553863	29554180	0.63	-	0	transcript_id "Ledus.S1G361600.t1"; gene_id "Ledus.S1G361600"
Ledus.S1	AUGUSTUS	exon	29553863	29554180	.	-	.	transcript_id "Ledus.S1G361600.t1"; gene_id "Ledus.S1G361600"
Ledus.S1	AUGUSTUS	start_codon	29554178	29554180	.	-	0	transcript_id "Ledus.S1G361600.t1"; gene_id "Ledus.S1G361600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6343.t1 is derived from g3786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30679586	30679852	.	-	.	Ledus.S1G376400
Ledus.S1	AUGUSTUS	transcript	30679586	30679852	.	-	.	transcript_id "Ledus.S1G376400.t1"; gene_id "Ledus.S1G376400"
Ledus.S1	AUGUSTUS	stop_codon	30679583	30679585	.	-	0	transcript_id "Ledus.S1G376400.t1"; gene_id "Ledus.S1G376400"
Ledus.S1	AUGUSTUS	CDS	30679586	30679852	0.19	-	0	transcript_id "Ledus.S1G376400.t1"; gene_id "Ledus.S1G376400"
Ledus.S1	AUGUSTUS	exon	30679586	30679852	.	-	.	transcript_id "Ledus.S1G376400.t1"; gene_id "Ledus.S1G376400"
Ledus.S1	AUGUSTUS	start_codon	30679850	30679852	.	-	0	transcript_id "Ledus.S1G376400.t1"; gene_id "Ledus.S1G376400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6298.t1 is derived from g3741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30245820	30246265	.	-	.	Ledus.S1G371900
Ledus.S1	AUGUSTUS	transcript	30245820	30246265	.	-	.	transcript_id "Ledus.S1G371900.t1"; gene_id "Ledus.S1G371900"
Ledus.S1	AUGUSTUS	stop_codon	30245817	30245819	.	-	0	transcript_id "Ledus.S1G371900.t1"; gene_id "Ledus.S1G371900"
Ledus.S1	AUGUSTUS	CDS	30245820	30245834	0.65	-	0	transcript_id "Ledus.S1G371900.t1"; gene_id "Ledus.S1G371900"
Ledus.S1	AUGUSTUS	exon	30245820	30245834	.	-	.	transcript_id "Ledus.S1G371900.t1"; gene_id "Ledus.S1G371900"
Ledus.S1	AUGUSTUS	intron	30245835	30246019	.	-	.	transcript_id "Ledus.S1G371900.t1"; gene_id "Ledus.S1G371900"
Ledus.S1	AUGUSTUS	CDS	30246020	30246265	0.46	-	0	transcript_id "Ledus.S1G371900.t1"; gene_id "Ledus.S1G371900"
Ledus.S1	AUGUSTUS	exon	30246020	30246265	.	-	.	transcript_id "Ledus.S1G371900.t1"; gene_id "Ledus.S1G371900"
Ledus.S1	AUGUSTUS	start_codon	30246263	30246265	.	-	0	transcript_id "Ledus.S1G371900.t1"; gene_id "Ledus.S1G371900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5199.t1 is derived from g2638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22433923	22435236	.	+	.	Ledus.S1G262000
Ledus.S1	AUGUSTUS	transcript	22433923	22435236	.	+	.	transcript_id "Ledus.S1G262000.t1"; gene_id "Ledus.S1G262000"
Ledus.S1	AUGUSTUS	start_codon	22433923	22433925	.	+	0	transcript_id "Ledus.S1G262000.t1"; gene_id "Ledus.S1G262000"
Ledus.S1	AUGUSTUS	CDS	22433923	22435236	0.83	+	0	transcript_id "Ledus.S1G262000.t1"; gene_id "Ledus.S1G262000"
Ledus.S1	AUGUSTUS	exon	22433923	22435236	.	+	.	transcript_id "Ledus.S1G262000.t1"; gene_id "Ledus.S1G262000"
Ledus.S1	AUGUSTUS	stop_codon	22435237	22435239	.	+	0	transcript_id "Ledus.S1G262000.t1"; gene_id "Ledus.S1G262000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13076.t1 is derived from g6886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5069751	5071028	.	-	.	Ledus.S6G013800
Ledus.S6	AUGUSTUS	transcript	5069751	5071028	.	-	.	transcript_id "Ledus.S6G013800.t1"; gene_id "Ledus.S6G013800"
Ledus.S6	AUGUSTUS	stop_codon	5069748	5069750	.	-	0	transcript_id "Ledus.S6G013800.t1"; gene_id "Ledus.S6G013800"
Ledus.S6	AUGUSTUS	CDS	5069751	5071028	0.99	-	0	transcript_id "Ledus.S6G013800.t1"; gene_id "Ledus.S6G013800"
Ledus.S6	AUGUSTUS	exon	5069751	5071028	.	-	.	transcript_id "Ledus.S6G013800.t1"; gene_id "Ledus.S6G013800"
Ledus.S6	AUGUSTUS	start_codon	5071026	5071028	.	-	0	transcript_id "Ledus.S6G013800.t1"; gene_id "Ledus.S6G013800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9551.t1 is derived from g10581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7754126	7755475	.	-	.	Ledus.S3G102800
Ledus.S3	AUGUSTUS	transcript	7754126	7755475	.	-	.	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	stop_codon	7754123	7754125	.	-	0	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	CDS	7754126	7754272	1	-	0	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	exon	7754126	7754272	.	-	.	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	intron	7754273	7754358	.	-	.	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	CDS	7754359	7754452	1	-	1	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	exon	7754359	7754452	.	-	.	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	intron	7754453	7754540	.	-	.	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	CDS	7754541	7754806	1	-	0	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	exon	7754541	7754806	.	-	.	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	intron	7754807	7754893	.	-	.	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	CDS	7754894	7755475	0.7	-	0	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	exon	7754894	7755475	.	-	.	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
Ledus.S3	AUGUSTUS	start_codon	7755473	7755475	.	-	0	transcript_id "Ledus.S3G102800.t1"; gene_id "Ledus.S3G102800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9855.t1 is derived from g10885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10587367	10588218	.	+	.	Ledus.S3G133200
Ledus.S3	AUGUSTUS	transcript	10587367	10588218	.	+	.	transcript_id "Ledus.S3G133200.t1"; gene_id "Ledus.S3G133200"
Ledus.S3	AUGUSTUS	start_codon	10587367	10587369	.	+	0	transcript_id "Ledus.S3G133200.t1"; gene_id "Ledus.S3G133200"
Ledus.S3	AUGUSTUS	CDS	10587367	10588218	0.54	+	0	transcript_id "Ledus.S3G133200.t1"; gene_id "Ledus.S3G133200"
Ledus.S3	AUGUSTUS	exon	10587367	10588218	.	+	.	transcript_id "Ledus.S3G133200.t1"; gene_id "Ledus.S3G133200"
Ledus.S3	AUGUSTUS	stop_codon	10588219	10588221	.	+	0	transcript_id "Ledus.S3G133200.t1"; gene_id "Ledus.S3G133200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6339.t1 is derived from g3782.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30653338	30654648	.	+	.	Ledus.S1G376000
Ledus.S1	AUGUSTUS	transcript	30653338	30654648	.	+	.	transcript_id "Ledus.S1G376000.t1"; gene_id "Ledus.S1G376000"
Ledus.S1	AUGUSTUS	start_codon	30653338	30653340	.	+	0	transcript_id "Ledus.S1G376000.t1"; gene_id "Ledus.S1G376000"
Ledus.S1	AUGUSTUS	CDS	30653338	30653886	0.9	+	0	transcript_id "Ledus.S1G376000.t1"; gene_id "Ledus.S1G376000"
Ledus.S1	AUGUSTUS	exon	30653338	30653886	.	+	.	transcript_id "Ledus.S1G376000.t1"; gene_id "Ledus.S1G376000"
Ledus.S1	AUGUSTUS	intron	30653887	30653958	.	+	.	transcript_id "Ledus.S1G376000.t1"; gene_id "Ledus.S1G376000"
Ledus.S1	AUGUSTUS	CDS	30653959	30654648	1	+	0	transcript_id "Ledus.S1G376000.t1"; gene_id "Ledus.S1G376000"
Ledus.S1	AUGUSTUS	exon	30653959	30654648	.	+	.	transcript_id "Ledus.S1G376000.t1"; gene_id "Ledus.S1G376000"
Ledus.S1	AUGUSTUS	stop_codon	30654649	30654651	.	+	0	transcript_id "Ledus.S1G376000.t1"; gene_id "Ledus.S1G376000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11139.t1 is derived from g4757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2129343	2132888	.	-	.	Ledus.S4G029500
Ledus.S4	AUGUSTUS	transcript	2129343	2132888	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	stop_codon	2129340	2129342	.	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2129343	2129371	0.31	-	2	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2129343	2129371	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2129372	2129548	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2129549	2129735	0.24	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2129549	2129735	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2129736	2129823	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2129824	2129931	1	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2129824	2129931	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2129932	2130046	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2130047	2130121	1	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2130047	2130121	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2130122	2130215	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2130216	2130386	1	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2130216	2130386	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2130387	2130476	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2130477	2130577	1	-	2	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2130477	2130577	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2130578	2130676	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2130677	2130754	1	-	2	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2130677	2130754	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2130755	2130876	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2130877	2131033	0.98	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2130877	2131033	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2131034	2131142	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2131143	2131412	0.99	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2131143	2131412	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2131413	2131510	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2131511	2131630	1	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2131511	2131630	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2131631	2131705	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2131706	2131807	1	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2131706	2131807	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2131808	2131931	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2131932	2132135	1	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2131932	2132135	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2132136	2132227	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2132228	2132395	1	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2132228	2132395	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	intron	2132396	2132486	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	CDS	2132487	2132888	1	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	exon	2132487	2132888	.	-	.	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
Ledus.S4	AUGUSTUS	start_codon	2132886	2132888	.	-	0	transcript_id "Ledus.S4G029500.t1"; gene_id "Ledus.S4G029500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9702.t1 is derived from g10732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9109990	9112068	.	+	.	Ledus.S3G117900
Ledus.S3	AUGUSTUS	transcript	9109990	9112068	.	+	.	transcript_id "Ledus.S3G117900.t1"; gene_id "Ledus.S3G117900"
Ledus.S3	AUGUSTUS	start_codon	9109990	9109992	.	+	0	transcript_id "Ledus.S3G117900.t1"; gene_id "Ledus.S3G117900"
Ledus.S3	AUGUSTUS	CDS	9109990	9112068	0.97	+	0	transcript_id "Ledus.S3G117900.t1"; gene_id "Ledus.S3G117900"
Ledus.S3	AUGUSTUS	exon	9109990	9112068	.	+	.	transcript_id "Ledus.S3G117900.t1"; gene_id "Ledus.S3G117900"
Ledus.S3	AUGUSTUS	stop_codon	9112069	9112071	.	+	0	transcript_id "Ledus.S3G117900.t1"; gene_id "Ledus.S3G117900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4835.t1 is derived from g2273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20062548	20064001	.	+	.	Ledus.S1G225600
Ledus.S1	AUGUSTUS	transcript	20062548	20064001	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	start_codon	20062548	20062550	.	+	0	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	CDS	20062548	20062615	0.53	+	0	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	exon	20062548	20062615	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	intron	20062616	20062707	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	CDS	20062708	20062889	0.99	+	1	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	exon	20062708	20062889	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	intron	20062890	20063062	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	CDS	20063063	20063138	0.65	+	2	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	exon	20063063	20063138	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	intron	20063139	20063217	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	CDS	20063218	20063240	0.81	+	1	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	exon	20063218	20063240	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	intron	20063241	20063331	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	CDS	20063332	20063471	0.75	+	2	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	exon	20063332	20063471	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	intron	20063472	20063548	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	CDS	20063549	20063798	0.63	+	0	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	exon	20063549	20063798	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	intron	20063799	20063870	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	CDS	20063871	20064001	0.69	+	2	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	exon	20063871	20064001	.	+	.	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
Ledus.S1	AUGUSTUS	stop_codon	20064002	20064004	.	+	0	transcript_id "Ledus.S1G225600.t1"; gene_id "Ledus.S1G225600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12569.t1 is derived from g6191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12907667	12910801	.	-	.	Ledus.S4G172500
Ledus.S4	AUGUSTUS	transcript	12907667	12910801	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	stop_codon	12907664	12907666	.	-	0	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	CDS	12907667	12907749	0.57	-	2	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	exon	12907667	12907749	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	intron	12907750	12907835	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	CDS	12907836	12907981	0.57	-	1	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	exon	12907836	12907981	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	intron	12907982	12908077	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	CDS	12908078	12908226	1	-	0	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	exon	12908078	12908226	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	intron	12908227	12908322	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	CDS	12908323	12908431	1	-	1	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	exon	12908323	12908431	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	intron	12908432	12908517	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	CDS	12908518	12908711	1	-	0	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	exon	12908518	12908711	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	intron	12908712	12908797	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	CDS	12908798	12909668	0.73	-	1	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	exon	12908798	12909668	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	intron	12909669	12909813	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	CDS	12909814	12909898	0.94	-	2	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	exon	12909814	12909898	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	intron	12909899	12910035	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	CDS	12910036	12910122	0.99	-	2	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	exon	12910036	12910122	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	intron	12910123	12910221	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	CDS	12910222	12910345	1	-	0	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	exon	12910222	12910345	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	intron	12910346	12910550	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	CDS	12910551	12910626	1	-	1	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	exon	12910551	12910626	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	intron	12910627	12910724	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	CDS	12910725	12910801	0.91	-	0	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	exon	12910725	12910801	.	-	.	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
Ledus.S4	AUGUSTUS	start_codon	12910799	12910801	.	-	0	transcript_id "Ledus.S4G172500.t1"; gene_id "Ledus.S4G172500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2001.t1 is derived from g8864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14128750	14135531	.	+	.	Ledus.S2G188300
Ledus.S2	AUGUSTUS	transcript	14128750	14135531	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	start_codon	14128750	14128752	.	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14128750	14128993	0.51	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14128750	14128993	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14128994	14129326	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14129327	14129337	1	+	2	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14129327	14129337	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14129338	14129427	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14129428	14129568	1	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14129428	14129568	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14129569	14129636	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14129637	14129721	0.99	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14129637	14129721	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14129722	14129833	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14129834	14129873	0.99	+	2	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14129834	14129873	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14129874	14130081	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14130082	14130330	1	+	1	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14130082	14130330	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14130331	14130401	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14130402	14130501	1	+	1	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14130402	14130501	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14130502	14130613	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14130614	14130688	0.98	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14130614	14130688	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14130689	14130793	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14130794	14130892	1	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14130794	14130892	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14130893	14130977	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14130978	14131094	1	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14130978	14131094	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14131095	14131204	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14131205	14131320	1	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14131205	14131320	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14131321	14131420	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14131421	14131494	0.7	+	1	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14131421	14131494	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14131495	14131596	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14131597	14131996	0.69	+	2	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14131597	14131996	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14131997	14132099	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14132100	14132430	1	+	1	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14132100	14132430	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14132431	14132528	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14132529	14132713	1	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14132529	14132713	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14132714	14132807	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14132808	14133026	1	+	1	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14132808	14133026	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14133027	14133119	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14133120	14133312	1	+	1	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14133120	14133312	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14133313	14133383	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14133384	14133640	1	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14133384	14133640	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14133641	14133760	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14133761	14133853	1	+	1	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14133761	14133853	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14133854	14133939	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14133940	14134041	1	+	1	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14133940	14134041	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14134042	14134187	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14134188	14134596	1	+	1	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14134188	14134596	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14134597	14134683	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14134684	14134821	1	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14134684	14134821	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	intron	14134822	14134913	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	CDS	14134914	14135531	0.85	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	exon	14134914	14135531	.	+	.	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
Ledus.S2	AUGUSTUS	stop_codon	14135532	14135534	.	+	0	transcript_id "Ledus.S2G188300.t1"; gene_id "Ledus.S2G188300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6946.t1 is derived from g6477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	123682	125245	.	+	.	Ledus.C7G000700
Ledus.C7	AUGUSTUS	transcript	123682	125245	.	+	.	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	start_codon	123682	123684	.	+	0	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	CDS	123682	123748	1	+	0	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	exon	123682	123748	.	+	.	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	intron	123749	123839	.	+	.	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	CDS	123840	123908	1	+	2	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	exon	123840	123908	.	+	.	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	intron	123909	123981	.	+	.	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	CDS	123982	124108	1	+	2	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	exon	123982	124108	.	+	.	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	intron	124109	124205	.	+	.	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	CDS	124206	124323	1	+	1	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	exon	124206	124323	.	+	.	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	intron	124324	124399	.	+	.	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	CDS	124400	125245	0.97	+	0	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	exon	124400	125245	.	+	.	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
Ledus.C7	AUGUSTUS	stop_codon	125246	125248	.	+	0	transcript_id "Ledus.C7G000700.t1"; gene_id "Ledus.C7G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9280.t1 is derived from g10310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5763258	5764681	.	-	.	Ledus.S3G075700
Ledus.S3	AUGUSTUS	transcript	5763258	5764681	.	-	.	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	stop_codon	5763255	5763257	.	-	0	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	CDS	5763258	5763446	0.87	-	0	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	exon	5763258	5763446	.	-	.	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	intron	5763447	5763554	.	-	.	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	CDS	5763555	5763722	0.9	-	0	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	exon	5763555	5763722	.	-	.	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	intron	5763723	5763823	.	-	.	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	CDS	5763824	5764000	0.97	-	0	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	exon	5763824	5764000	.	-	.	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	intron	5764001	5764103	.	-	.	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	CDS	5764104	5764185	1	-	1	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	exon	5764104	5764185	.	-	.	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	intron	5764186	5764272	.	-	.	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	CDS	5764273	5764450	1	-	2	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	exon	5764273	5764450	.	-	.	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	intron	5764451	5764539	.	-	.	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	CDS	5764540	5764681	0.66	-	0	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	exon	5764540	5764681	.	-	.	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
Ledus.S3	AUGUSTUS	start_codon	5764679	5764681	.	-	0	transcript_id "Ledus.S3G075700.t1"; gene_id "Ledus.S3G075700"
# This transcript jg7375.t2 is derived from g12046.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7376.t1 is derived from g12047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1756311	1756625	.	-	.	Ledus.S5G015400
Ledus.S5	AUGUSTUS	transcript	1756311	1756625	.	-	.	transcript_id "Ledus.S5G015400.t1"; gene_id "Ledus.S5G015400"
Ledus.S5	AUGUSTUS	stop_codon	1756308	1756310	.	-	0	transcript_id "Ledus.S5G015400.t1"; gene_id "Ledus.S5G015400"
Ledus.S5	AUGUSTUS	CDS	1756311	1756625	0.62	-	0	transcript_id "Ledus.S5G015400.t1"; gene_id "Ledus.S5G015400"
Ledus.S5	AUGUSTUS	exon	1756311	1756625	.	-	.	transcript_id "Ledus.S5G015400.t1"; gene_id "Ledus.S5G015400"
Ledus.S5	AUGUSTUS	start_codon	1756623	1756625	.	-	0	transcript_id "Ledus.S5G015400.t1"; gene_id "Ledus.S5G015400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11863.t1 is derived from g5482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7426355	7428260	.	-	.	Ledus.S4G101900
Ledus.S4	AUGUSTUS	transcript	7426355	7428260	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	stop_codon	7426352	7426354	.	-	0	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	CDS	7426355	7426375	1	-	0	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	exon	7426355	7426375	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	intron	7426376	7426545	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	CDS	7426546	7426640	1	-	2	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	exon	7426546	7426640	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	intron	7426641	7426777	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	CDS	7426778	7426823	1	-	0	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	exon	7426778	7426823	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	intron	7426824	7426925	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	CDS	7426926	7427031	0.98	-	1	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	exon	7426926	7427031	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	intron	7427032	7427108	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	CDS	7427109	7427279	1	-	1	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	exon	7427109	7427279	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	intron	7427280	7427366	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	CDS	7427367	7427435	0.94	-	1	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	exon	7427367	7427435	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	intron	7427436	7427541	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	CDS	7427542	7427612	1	-	0	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	exon	7427542	7427612	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	intron	7427613	7427694	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	CDS	7427695	7427794	0.95	-	1	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	exon	7427695	7427794	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	intron	7427795	7427898	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	CDS	7427899	7428026	0.88	-	0	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	exon	7427899	7428026	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	intron	7428027	7428095	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	CDS	7428096	7428260	0.34	-	0	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	exon	7428096	7428260	.	-	.	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
Ledus.S4	AUGUSTUS	start_codon	7428258	7428260	.	-	0	transcript_id "Ledus.S4G101900.t1"; gene_id "Ledus.S4G101900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3936.t1 is derived from g1372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13641771	13642772	.	+	.	Ledus.S1G135700
Ledus.S1	AUGUSTUS	transcript	13641771	13642772	.	+	.	transcript_id "Ledus.S1G135700.t1"; gene_id "Ledus.S1G135700"
Ledus.S1	AUGUSTUS	start_codon	13641771	13641773	.	+	0	transcript_id "Ledus.S1G135700.t1"; gene_id "Ledus.S1G135700"
Ledus.S1	AUGUSTUS	CDS	13641771	13642078	0.98	+	0	transcript_id "Ledus.S1G135700.t1"; gene_id "Ledus.S1G135700"
Ledus.S1	AUGUSTUS	exon	13641771	13642078	.	+	.	transcript_id "Ledus.S1G135700.t1"; gene_id "Ledus.S1G135700"
Ledus.S1	AUGUSTUS	intron	13642079	13642150	.	+	.	transcript_id "Ledus.S1G135700.t1"; gene_id "Ledus.S1G135700"
Ledus.S1	AUGUSTUS	CDS	13642151	13642772	0.95	+	1	transcript_id "Ledus.S1G135700.t1"; gene_id "Ledus.S1G135700"
Ledus.S1	AUGUSTUS	exon	13642151	13642772	.	+	.	transcript_id "Ledus.S1G135700.t1"; gene_id "Ledus.S1G135700"
Ledus.S1	AUGUSTUS	stop_codon	13642773	13642775	.	+	0	transcript_id "Ledus.S1G135700.t1"; gene_id "Ledus.S1G135700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6705.t1 is derived from g4148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33422027	33424620	.	-	.	Ledus.S1G412600
Ledus.S1	AUGUSTUS	transcript	33422027	33424620	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	stop_codon	33422024	33422026	.	-	0	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33422027	33422128	0.98	-	0	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33422027	33422128	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	intron	33422129	33422206	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33422207	33422387	1	-	1	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33422207	33422387	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	intron	33422388	33422481	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33422482	33422628	0.88	-	1	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33422482	33422628	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	intron	33422629	33422742	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33422743	33422798	0.88	-	0	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33422743	33422798	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	intron	33422799	33422913	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33422914	33423142	0.94	-	1	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33422914	33423142	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	intron	33423143	33423244	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33423245	33423324	1	-	0	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33423245	33423324	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	intron	33423325	33423405	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33423406	33423486	1	-	0	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33423406	33423486	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	intron	33423487	33423597	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33423598	33423642	0.9	-	0	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33423598	33423642	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	intron	33423643	33423747	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33423748	33423786	0.99	-	0	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33423748	33423786	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	intron	33423787	33423898	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33423899	33423963	1	-	2	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33423899	33423963	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	intron	33423964	33424056	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33424057	33424149	0.43	-	2	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33424057	33424149	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	intron	33424150	33424250	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33424251	33424374	0.93	-	0	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33424251	33424374	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	intron	33424375	33424443	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	CDS	33424444	33424620	0.56	-	0	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	exon	33424444	33424620	.	-	.	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
Ledus.S1	AUGUSTUS	start_codon	33424618	33424620	.	-	0	transcript_id "Ledus.S1G412600.t1"; gene_id "Ledus.S1G412600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8477.t1 is derived from g13149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12118640	12120891	.	-	.	Ledus.S5G125500
Ledus.S5	AUGUSTUS	transcript	12118640	12120891	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	stop_codon	12118637	12118639	.	-	0	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	CDS	12118640	12118711	1	-	0	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	exon	12118640	12118711	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	intron	12118712	12118800	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	CDS	12118801	12118899	1	-	0	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	exon	12118801	12118899	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	intron	12118900	12118991	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	CDS	12118992	12119183	0.99	-	0	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	exon	12118992	12119183	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	intron	12119184	12119344	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	CDS	12119345	12119482	1	-	0	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	exon	12119345	12119482	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	intron	12119483	12119656	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	CDS	12119657	12119743	1	-	0	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	exon	12119657	12119743	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	intron	12119744	12119867	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	CDS	12119868	12119954	1	-	0	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	exon	12119868	12119954	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	intron	12119955	12120064	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	CDS	12120065	12120226	0.97	-	0	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	exon	12120065	12120226	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	intron	12120227	12120325	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	CDS	12120326	12120462	1	-	2	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	exon	12120326	12120462	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	intron	12120463	12120569	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	CDS	12120570	12120689	1	-	2	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	exon	12120570	12120689	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	intron	12120690	12120797	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	CDS	12120798	12120891	0.99	-	0	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	exon	12120798	12120891	.	-	.	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
Ledus.S5	AUGUSTUS	start_codon	12120889	12120891	.	-	0	transcript_id "Ledus.S5G125500.t1"; gene_id "Ledus.S5G125500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11993.t1 is derived from g5612.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8366637	8369196	.	-	.	Ledus.S4G114900
Ledus.S4	AUGUSTUS	transcript	8366637	8369196	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	stop_codon	8366634	8366636	.	-	0	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	CDS	8366637	8366729	0.73	-	0	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	exon	8366637	8366729	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	intron	8366730	8366844	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	CDS	8366845	8366923	0.77	-	1	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	exon	8366845	8366923	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	intron	8366924	8367065	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	CDS	8367066	8367111	1	-	2	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	exon	8367066	8367111	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	intron	8367112	8367342	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	CDS	8367343	8367582	0.99	-	2	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	exon	8367343	8367582	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	intron	8367583	8367785	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	CDS	8367786	8367917	1	-	2	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	exon	8367786	8367917	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	intron	8367918	8368014	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	CDS	8368015	8368081	1	-	0	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	exon	8368015	8368081	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	intron	8368082	8368248	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	CDS	8368249	8368308	1	-	0	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	exon	8368249	8368308	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	intron	8368309	8368553	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	CDS	8368554	8368622	1	-	0	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	exon	8368554	8368622	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	intron	8368623	8368914	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	CDS	8368915	8369196	0.81	-	0	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	exon	8368915	8369196	.	-	.	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
Ledus.S4	AUGUSTUS	start_codon	8369194	8369196	.	-	0	transcript_id "Ledus.S4G114900.t1"; gene_id "Ledus.S4G114900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7864.t1 is derived from g12535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7523141	7525331	.	+	.	Ledus.S5G064200
Ledus.S5	AUGUSTUS	transcript	7523141	7525331	.	+	.	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	start_codon	7523141	7523143	.	+	0	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	CDS	7523141	7523578	0.9	+	0	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	exon	7523141	7523578	.	+	.	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	intron	7523579	7523882	.	+	.	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	CDS	7523883	7524003	0.58	+	0	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	exon	7523883	7524003	.	+	.	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	intron	7524004	7524144	.	+	.	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	CDS	7524145	7524390	0.37	+	2	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	exon	7524145	7524390	.	+	.	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	intron	7524391	7524519	.	+	.	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	CDS	7524520	7524673	0.61	+	2	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	exon	7524520	7524673	.	+	.	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	intron	7524674	7524820	.	+	.	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	CDS	7524821	7525331	0.92	+	1	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	exon	7524821	7525331	.	+	.	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
Ledus.S5	AUGUSTUS	stop_codon	7525332	7525334	.	+	0	transcript_id "Ledus.S5G064200.t1"; gene_id "Ledus.S5G064200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6828.t1 is derived from g4272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34549142	34550218	.	+	.	Ledus.S1G424900
Ledus.S1	AUGUSTUS	transcript	34549142	34550218	.	+	.	transcript_id "Ledus.S1G424900.t1"; gene_id "Ledus.S1G424900"
Ledus.S1	AUGUSTUS	start_codon	34549142	34549144	.	+	0	transcript_id "Ledus.S1G424900.t1"; gene_id "Ledus.S1G424900"
Ledus.S1	AUGUSTUS	CDS	34549142	34550218	0.84	+	0	transcript_id "Ledus.S1G424900.t1"; gene_id "Ledus.S1G424900"
Ledus.S1	AUGUSTUS	exon	34549142	34550218	.	+	.	transcript_id "Ledus.S1G424900.t1"; gene_id "Ledus.S1G424900"
Ledus.S1	AUGUSTUS	stop_codon	34550219	34550221	.	+	0	transcript_id "Ledus.S1G424900.t1"; gene_id "Ledus.S1G424900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1215.t1 is derived from g8076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8653318	8654486	.	-	.	Ledus.S2G109700
Ledus.S2	AUGUSTUS	transcript	8653318	8654486	.	-	.	transcript_id "Ledus.S2G109700.t1"; gene_id "Ledus.S2G109700"
Ledus.S2	AUGUSTUS	stop_codon	8653315	8653317	.	-	0	transcript_id "Ledus.S2G109700.t1"; gene_id "Ledus.S2G109700"
Ledus.S2	AUGUSTUS	CDS	8653318	8653485	1	-	0	transcript_id "Ledus.S2G109700.t1"; gene_id "Ledus.S2G109700"
Ledus.S2	AUGUSTUS	exon	8653318	8653485	.	-	.	transcript_id "Ledus.S2G109700.t1"; gene_id "Ledus.S2G109700"
Ledus.S2	AUGUSTUS	intron	8653486	8653565	.	-	.	transcript_id "Ledus.S2G109700.t1"; gene_id "Ledus.S2G109700"
Ledus.S2	AUGUSTUS	CDS	8653566	8653882	1	-	2	transcript_id "Ledus.S2G109700.t1"; gene_id "Ledus.S2G109700"
Ledus.S2	AUGUSTUS	exon	8653566	8653882	.	-	.	transcript_id "Ledus.S2G109700.t1"; gene_id "Ledus.S2G109700"
Ledus.S2	AUGUSTUS	intron	8653883	8654110	.	-	.	transcript_id "Ledus.S2G109700.t1"; gene_id "Ledus.S2G109700"
Ledus.S2	AUGUSTUS	CDS	8654111	8654486	0.97	-	0	transcript_id "Ledus.S2G109700.t1"; gene_id "Ledus.S2G109700"
Ledus.S2	AUGUSTUS	exon	8654111	8654486	.	-	.	transcript_id "Ledus.S2G109700.t1"; gene_id "Ledus.S2G109700"
Ledus.S2	AUGUSTUS	start_codon	8654484	8654486	.	-	0	transcript_id "Ledus.S2G109700.t1"; gene_id "Ledus.S2G109700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8708.t1 is derived from g9738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1526975	1530274	.	-	.	Ledus.S3G018500
Ledus.S3	AUGUSTUS	transcript	1526975	1530274	.	-	.	transcript_id "Ledus.S3G018500.t1"; gene_id "Ledus.S3G018500"
Ledus.S3	AUGUSTUS	stop_codon	1526972	1526974	.	-	0	transcript_id "Ledus.S3G018500.t1"; gene_id "Ledus.S3G018500"
Ledus.S3	AUGUSTUS	CDS	1526975	1527819	0.76	-	2	transcript_id "Ledus.S3G018500.t1"; gene_id "Ledus.S3G018500"
Ledus.S3	AUGUSTUS	exon	1526975	1527819	.	-	.	transcript_id "Ledus.S3G018500.t1"; gene_id "Ledus.S3G018500"
Ledus.S3	AUGUSTUS	intron	1527820	1527918	.	-	.	transcript_id "Ledus.S3G018500.t1"; gene_id "Ledus.S3G018500"
Ledus.S3	AUGUSTUS	CDS	1527919	1530274	0.67	-	0	transcript_id "Ledus.S3G018500.t1"; gene_id "Ledus.S3G018500"
Ledus.S3	AUGUSTUS	exon	1527919	1530274	.	-	.	transcript_id "Ledus.S3G018500.t1"; gene_id "Ledus.S3G018500"
Ledus.S3	AUGUSTUS	start_codon	1530272	1530274	.	-	0	transcript_id "Ledus.S3G018500.t1"; gene_id "Ledus.S3G018500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2124.t1 is derived from g8987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14830709	14834276	.	+	.	Ledus.S2G200600
Ledus.S2	AUGUSTUS	transcript	14830709	14834276	.	+	.	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	start_codon	14830709	14830711	.	+	0	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	CDS	14830709	14830828	0.96	+	0	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	exon	14830709	14830828	.	+	.	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	intron	14830829	14830965	.	+	.	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	CDS	14830966	14831108	0.85	+	0	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	exon	14830966	14831108	.	+	.	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	intron	14831109	14831221	.	+	.	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	CDS	14831222	14832105	0.73	+	1	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	exon	14831222	14832105	.	+	.	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	intron	14832106	14832204	.	+	.	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	CDS	14832205	14834276	0.73	+	2	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	exon	14832205	14834276	.	+	.	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
Ledus.S2	AUGUSTUS	stop_codon	14834277	14834279	.	+	0	transcript_id "Ledus.S2G200600.t1"; gene_id "Ledus.S2G200600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3172.t1 is derived from g607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6568783	6569634	.	+	.	Ledus.S1G059300
Ledus.S1	AUGUSTUS	transcript	6568783	6569634	.	+	.	transcript_id "Ledus.S1G059300.t1"; gene_id "Ledus.S1G059300"
Ledus.S1	AUGUSTUS	start_codon	6568783	6568785	.	+	0	transcript_id "Ledus.S1G059300.t1"; gene_id "Ledus.S1G059300"
Ledus.S1	AUGUSTUS	CDS	6568783	6568918	0.96	+	0	transcript_id "Ledus.S1G059300.t1"; gene_id "Ledus.S1G059300"
Ledus.S1	AUGUSTUS	exon	6568783	6568918	.	+	.	transcript_id "Ledus.S1G059300.t1"; gene_id "Ledus.S1G059300"
Ledus.S1	AUGUSTUS	intron	6568919	6568993	.	+	.	transcript_id "Ledus.S1G059300.t1"; gene_id "Ledus.S1G059300"
Ledus.S1	AUGUSTUS	CDS	6568994	6569634	1	+	2	transcript_id "Ledus.S1G059300.t1"; gene_id "Ledus.S1G059300"
Ledus.S1	AUGUSTUS	exon	6568994	6569634	.	+	.	transcript_id "Ledus.S1G059300.t1"; gene_id "Ledus.S1G059300"
Ledus.S1	AUGUSTUS	stop_codon	6569635	6569637	.	+	0	transcript_id "Ledus.S1G059300.t1"; gene_id "Ledus.S1G059300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10355.t1 is derived from g11385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14372907	14374238	.	-	.	Ledus.S3G183200
Ledus.S3	AUGUSTUS	transcript	14372907	14374238	.	-	.	transcript_id "Ledus.S3G183200.t1"; gene_id "Ledus.S3G183200"
Ledus.S3	AUGUSTUS	stop_codon	14372904	14372906	.	-	0	transcript_id "Ledus.S3G183200.t1"; gene_id "Ledus.S3G183200"
Ledus.S3	AUGUSTUS	CDS	14372907	14374238	0.51	-	0	transcript_id "Ledus.S3G183200.t1"; gene_id "Ledus.S3G183200"
Ledus.S3	AUGUSTUS	exon	14372907	14374238	.	-	.	transcript_id "Ledus.S3G183200.t1"; gene_id "Ledus.S3G183200"
Ledus.S3	AUGUSTUS	start_codon	14374236	14374238	.	-	0	transcript_id "Ledus.S3G183200.t1"; gene_id "Ledus.S3G183200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7181.t1 is derived from g6712.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2022086	2023565	.	+	.	Ledus.C7G024200
Ledus.C7	AUGUSTUS	transcript	2022086	2023565	.	+	.	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	start_codon	2022086	2022088	.	+	0	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	CDS	2022086	2022476	0.54	+	0	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	exon	2022086	2022476	.	+	.	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	intron	2022477	2022575	.	+	.	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	CDS	2022576	2022627	1	+	2	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	exon	2022576	2022627	.	+	.	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	intron	2022628	2022805	.	+	.	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	CDS	2022806	2022898	0.94	+	1	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	exon	2022806	2022898	.	+	.	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	intron	2022899	2023015	.	+	.	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	CDS	2023016	2023096	0.92	+	1	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	exon	2023016	2023096	.	+	.	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	intron	2023097	2023182	.	+	.	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	CDS	2023183	2023260	1	+	1	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	exon	2023183	2023260	.	+	.	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	intron	2023261	2023354	.	+	.	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	CDS	2023355	2023565	0.99	+	1	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	exon	2023355	2023565	.	+	.	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
Ledus.C7	AUGUSTUS	stop_codon	2023566	2023568	.	+	0	transcript_id "Ledus.C7G024200.t1"; gene_id "Ledus.C7G024200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg384.t1 is derived from g7245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2130761	2131300	.	+	.	Ledus.S2G026600
Ledus.S2	AUGUSTUS	transcript	2130761	2131300	.	+	.	transcript_id "Ledus.S2G026600.t1"; gene_id "Ledus.S2G026600"
Ledus.S2	AUGUSTUS	start_codon	2130761	2130763	.	+	0	transcript_id "Ledus.S2G026600.t1"; gene_id "Ledus.S2G026600"
Ledus.S2	AUGUSTUS	CDS	2130761	2131300	0.84	+	0	transcript_id "Ledus.S2G026600.t1"; gene_id "Ledus.S2G026600"
Ledus.S2	AUGUSTUS	exon	2130761	2131300	.	+	.	transcript_id "Ledus.S2G026600.t1"; gene_id "Ledus.S2G026600"
Ledus.S2	AUGUSTUS	stop_codon	2131301	2131303	.	+	0	transcript_id "Ledus.S2G026600.t1"; gene_id "Ledus.S2G026600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1120.t1 is derived from g7981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7670852	7672318	.	+	.	Ledus.S2G100200
Ledus.S2	AUGUSTUS	transcript	7670852	7672318	.	+	.	transcript_id "Ledus.S2G100200.t1"; gene_id "Ledus.S2G100200"
Ledus.S2	AUGUSTUS	start_codon	7670852	7670854	.	+	0	transcript_id "Ledus.S2G100200.t1"; gene_id "Ledus.S2G100200"
Ledus.S2	AUGUSTUS	CDS	7670852	7671358	0.72	+	0	transcript_id "Ledus.S2G100200.t1"; gene_id "Ledus.S2G100200"
Ledus.S2	AUGUSTUS	exon	7670852	7671358	.	+	.	transcript_id "Ledus.S2G100200.t1"; gene_id "Ledus.S2G100200"
Ledus.S2	AUGUSTUS	intron	7671359	7671474	.	+	.	transcript_id "Ledus.S2G100200.t1"; gene_id "Ledus.S2G100200"
Ledus.S2	AUGUSTUS	CDS	7671475	7671561	0.79	+	0	transcript_id "Ledus.S2G100200.t1"; gene_id "Ledus.S2G100200"
Ledus.S2	AUGUSTUS	exon	7671475	7671561	.	+	.	transcript_id "Ledus.S2G100200.t1"; gene_id "Ledus.S2G100200"
Ledus.S2	AUGUSTUS	intron	7671562	7671658	.	+	.	transcript_id "Ledus.S2G100200.t1"; gene_id "Ledus.S2G100200"
Ledus.S2	AUGUSTUS	CDS	7671659	7672318	0.99	+	0	transcript_id "Ledus.S2G100200.t1"; gene_id "Ledus.S2G100200"
Ledus.S2	AUGUSTUS	exon	7671659	7672318	.	+	.	transcript_id "Ledus.S2G100200.t1"; gene_id "Ledus.S2G100200"
Ledus.S2	AUGUSTUS	stop_codon	7672319	7672321	.	+	0	transcript_id "Ledus.S2G100200.t1"; gene_id "Ledus.S2G100200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10855.t1 is derived from g4473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	114987	117851	.	+	.	Ledus.S4G001100
Ledus.S4	AUGUSTUS	transcript	114987	117851	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	start_codon	114987	114989	.	+	0	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	CDS	114987	115068	0.82	+	0	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	exon	114987	115068	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	intron	115069	115151	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	CDS	115152	115380	1	+	2	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	exon	115152	115380	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	intron	115381	115461	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	CDS	115462	116282	0.88	+	1	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	exon	115462	116282	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	intron	116283	116383	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	CDS	116384	116531	0.9	+	2	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	exon	116384	116531	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	intron	116532	116689	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	CDS	116690	116761	1	+	1	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	exon	116690	116761	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	intron	116762	116869	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	CDS	116870	116941	1	+	1	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	exon	116870	116941	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	intron	116942	117039	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	CDS	117040	117111	1	+	1	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	exon	117040	117111	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	intron	117112	117216	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	CDS	117217	117294	1	+	1	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	exon	117217	117294	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	intron	117295	117385	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	CDS	117386	117567	0.99	+	1	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	exon	117386	117567	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	intron	117568	117729	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	CDS	117730	117851	0.9	+	2	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	exon	117730	117851	.	+	.	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
Ledus.S4	AUGUSTUS	stop_codon	117852	117854	.	+	0	transcript_id "Ledus.S4G001100.t1"; gene_id "Ledus.S4G001100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1256.t1 is derived from g8117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8934664	8935551	.	-	.	Ledus.S2G113800
Ledus.S2	AUGUSTUS	transcript	8934664	8935551	.	-	.	transcript_id "Ledus.S2G113800.t1"; gene_id "Ledus.S2G113800"
Ledus.S2	AUGUSTUS	stop_codon	8934661	8934663	.	-	0	transcript_id "Ledus.S2G113800.t1"; gene_id "Ledus.S2G113800"
Ledus.S2	AUGUSTUS	CDS	8934664	8935064	0.45	-	2	transcript_id "Ledus.S2G113800.t1"; gene_id "Ledus.S2G113800"
Ledus.S2	AUGUSTUS	exon	8934664	8935064	.	-	.	transcript_id "Ledus.S2G113800.t1"; gene_id "Ledus.S2G113800"
Ledus.S2	AUGUSTUS	intron	8935065	8935168	.	-	.	transcript_id "Ledus.S2G113800.t1"; gene_id "Ledus.S2G113800"
Ledus.S2	AUGUSTUS	CDS	8935169	8935372	0.46	-	2	transcript_id "Ledus.S2G113800.t1"; gene_id "Ledus.S2G113800"
Ledus.S2	AUGUSTUS	exon	8935169	8935372	.	-	.	transcript_id "Ledus.S2G113800.t1"; gene_id "Ledus.S2G113800"
Ledus.S2	AUGUSTUS	intron	8935373	8935466	.	-	.	transcript_id "Ledus.S2G113800.t1"; gene_id "Ledus.S2G113800"
Ledus.S2	AUGUSTUS	CDS	8935467	8935551	0.61	-	0	transcript_id "Ledus.S2G113800.t1"; gene_id "Ledus.S2G113800"
Ledus.S2	AUGUSTUS	exon	8935467	8935551	.	-	.	transcript_id "Ledus.S2G113800.t1"; gene_id "Ledus.S2G113800"
Ledus.S2	AUGUSTUS	start_codon	8935549	8935551	.	-	0	transcript_id "Ledus.S2G113800.t1"; gene_id "Ledus.S2G113800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8374.t1 is derived from g13046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11279095	11284232	.	+	.	Ledus.S5G115200
Ledus.S5	AUGUSTUS	transcript	11279095	11284232	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	start_codon	11279095	11279097	.	+	0	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	CDS	11279095	11279191	0.85	+	0	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	exon	11279095	11279191	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	intron	11279192	11279263	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	CDS	11279264	11279326	1	+	2	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	exon	11279264	11279326	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	intron	11279327	11279531	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	CDS	11279532	11279602	1	+	2	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	exon	11279532	11279602	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	intron	11279603	11279753	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	CDS	11279754	11279980	0.98	+	0	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	exon	11279754	11279980	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	intron	11279981	11280126	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	CDS	11280127	11280732	0.68	+	1	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	exon	11280127	11280732	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	intron	11280733	11280872	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	CDS	11280873	11280887	0.7	+	1	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	exon	11280873	11280887	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	intron	11280888	11280978	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	CDS	11280979	11282476	0.28	+	1	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	exon	11280979	11282476	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	intron	11282477	11283184	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	CDS	11283185	11283980	0.75	+	0	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	exon	11283185	11283980	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	intron	11283981	11284113	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	CDS	11284114	11284232	0.93	+	2	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	exon	11284114	11284232	.	+	.	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
Ledus.S5	AUGUSTUS	stop_codon	11284233	11284235	.	+	0	transcript_id "Ledus.S5G115200.t1"; gene_id "Ledus.S5G115200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12339.t1 is derived from g5960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11310393	11311640	.	+	.	Ledus.S4G149500
Ledus.S4	AUGUSTUS	transcript	11310393	11311640	.	+	.	transcript_id "Ledus.S4G149500.t1"; gene_id "Ledus.S4G149500"
Ledus.S4	AUGUSTUS	start_codon	11310393	11310395	.	+	0	transcript_id "Ledus.S4G149500.t1"; gene_id "Ledus.S4G149500"
Ledus.S4	AUGUSTUS	CDS	11310393	11311640	0.94	+	0	transcript_id "Ledus.S4G149500.t1"; gene_id "Ledus.S4G149500"
Ledus.S4	AUGUSTUS	exon	11310393	11311640	.	+	.	transcript_id "Ledus.S4G149500.t1"; gene_id "Ledus.S4G149500"
Ledus.S4	AUGUSTUS	stop_codon	11311641	11311643	.	+	0	transcript_id "Ledus.S4G149500.t1"; gene_id "Ledus.S4G149500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13129.t1 is derived from g6939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6610613	6610849	.	-	.	Ledus.S6G019100
Ledus.S6	AUGUSTUS	transcript	6610613	6610849	.	-	.	transcript_id "Ledus.S6G019100.t1"; gene_id "Ledus.S6G019100"
Ledus.S6	AUGUSTUS	stop_codon	6610610	6610612	.	-	0	transcript_id "Ledus.S6G019100.t1"; gene_id "Ledus.S6G019100"
Ledus.S6	AUGUSTUS	CDS	6610613	6610849	0.9	-	0	transcript_id "Ledus.S6G019100.t1"; gene_id "Ledus.S6G019100"
Ledus.S6	AUGUSTUS	exon	6610613	6610849	.	-	.	transcript_id "Ledus.S6G019100.t1"; gene_id "Ledus.S6G019100"
Ledus.S6	AUGUSTUS	start_codon	6610847	6610849	.	-	0	transcript_id "Ledus.S6G019100.t1"; gene_id "Ledus.S6G019100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg9109.t1 is derived from g10139.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4643041	4644768	.	+	.	Ledus.S3G058600
Ledus.S3	AUGUSTUS	transcript	4643041	4644768	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	start_codon	4643041	4643043	.	+	0	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643041	4643188	0.94	+	0	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643041	4643188	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643189	4643261	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643262	4643365	0.99	+	2	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643262	4643365	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643366	4643467	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643468	4643524	1	+	0	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643468	4643524	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643525	4643660	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643661	4643710	1	+	0	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643661	4643710	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643711	4643857	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643858	4643943	0.86	+	1	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643858	4643943	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643944	4644065	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644066	4644145	0.48	+	2	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644066	4644145	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4644146	4644291	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644292	4644342	1	+	0	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644292	4644342	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4644343	4644418	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644419	4644505	1	+	0	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644419	4644505	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4644506	4644597	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644598	4644768	1	+	0	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644598	4644768	.	+	.	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	stop_codon	4644769	4644771	.	+	0	transcript_id "Ledus.S3G058600.t1"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	transcript	4643041	4644616	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	start_codon	4643041	4643043	.	+	0	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643041	4643188	0.92	+	0	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643041	4643188	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643189	4643261	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643262	4643365	1	+	2	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643262	4643365	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643366	4643467	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643468	4643524	1	+	0	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643468	4643524	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643525	4643660	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643661	4643710	1	+	0	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643661	4643710	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643711	4643857	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643858	4643943	0.83	+	1	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643858	4643943	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643944	4644065	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644066	4644145	0.4	+	2	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644066	4644145	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4644146	4644291	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644292	4644342	1	+	0	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644292	4644342	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4644343	4644418	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644419	4644473	1	+	0	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644419	4644473	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4644474	4644557	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644558	4644616	0.97	+	2	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644558	4644616	.	+	.	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	stop_codon	4644617	4644619	.	+	0	transcript_id "Ledus.S3G058600.t2"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	transcript	4643041	4644768	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	start_codon	4643041	4643043	.	+	0	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643041	4643188	0.96	+	0	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643041	4643188	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643189	4643261	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643262	4643298	0.95	+	2	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643262	4643298	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643299	4643467	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643468	4643524	0.95	+	1	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643468	4643524	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643525	4643668	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643669	4643710	0.98	+	1	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643669	4643710	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643711	4643857	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643858	4643943	0.84	+	1	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643858	4643943	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643944	4644065	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644066	4644145	0.35	+	2	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644066	4644145	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4644146	4644291	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644292	4644342	1	+	0	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644292	4644342	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4644343	4644418	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644419	4644505	1	+	0	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644419	4644505	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4644506	4644597	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644598	4644768	0.98	+	0	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644598	4644768	.	+	.	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	stop_codon	4644769	4644771	.	+	0	transcript_id "Ledus.S3G058600.t3"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	transcript	4643041	4644768	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	start_codon	4643041	4643043	.	+	0	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643041	4643188	0.94	+	0	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643041	4643188	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643189	4643261	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643262	4643365	0.99	+	2	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643262	4643365	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643366	4643467	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643468	4643524	1	+	0	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643468	4643524	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643525	4643660	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643661	4643746	0.9	+	0	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643661	4643746	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643747	4643857	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4643858	4643943	0.61	+	1	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4643858	4643943	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4643944	4644065	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644066	4644145	0.33	+	2	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644066	4644145	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4644146	4644291	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644292	4644342	1	+	0	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644292	4644342	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4644343	4644418	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644419	4644505	1	+	0	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644419	4644505	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	intron	4644506	4644597	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	CDS	4644598	4644768	0.99	+	0	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	exon	4644598	4644768	.	+	.	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
Ledus.S3	AUGUSTUS	stop_codon	4644769	4644771	.	+	0	transcript_id "Ledus.S3G058600.t4"; gene_id "Ledus.S3G058600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12948.t1 is derived from g6758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	591680	592160	.	+	.	Ledus.S6G001000
Ledus.S6	AUGUSTUS	transcript	591680	592160	.	+	.	transcript_id "Ledus.S6G001000.t1"; gene_id "Ledus.S6G001000"
Ledus.S6	AUGUSTUS	start_codon	591680	591682	.	+	0	transcript_id "Ledus.S6G001000.t1"; gene_id "Ledus.S6G001000"
Ledus.S6	AUGUSTUS	CDS	591680	591758	0.66	+	0	transcript_id "Ledus.S6G001000.t1"; gene_id "Ledus.S6G001000"
Ledus.S6	AUGUSTUS	exon	591680	591758	.	+	.	transcript_id "Ledus.S6G001000.t1"; gene_id "Ledus.S6G001000"
Ledus.S6	AUGUSTUS	intron	591759	591933	.	+	.	transcript_id "Ledus.S6G001000.t1"; gene_id "Ledus.S6G001000"
Ledus.S6	AUGUSTUS	CDS	591934	592160	0.68	+	2	transcript_id "Ledus.S6G001000.t1"; gene_id "Ledus.S6G001000"
Ledus.S6	AUGUSTUS	exon	591934	592160	.	+	.	transcript_id "Ledus.S6G001000.t1"; gene_id "Ledus.S6G001000"
Ledus.S6	AUGUSTUS	stop_codon	592161	592163	.	+	0	transcript_id "Ledus.S6G001000.t1"; gene_id "Ledus.S6G001000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8490.t1 is derived from g13162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12181474	12187066	.	+	.	Ledus.S5G126800
Ledus.S5	AUGUSTUS	transcript	12181474	12187066	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	start_codon	12181474	12181476	.	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12181474	12181931	1	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12181474	12181931	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12181932	12182030	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12182031	12182103	1	+	1	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12182031	12182103	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12182104	12182206	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12182207	12182326	0.93	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12182207	12182326	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12182327	12182426	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12182427	12182548	1	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12182427	12182548	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12182549	12182684	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12182685	12182757	0.99	+	1	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12182685	12182757	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12182758	12182881	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12182882	12182998	1	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12182882	12182998	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12182999	12183113	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12183114	12183197	0.98	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12183114	12183197	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12183198	12183389	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12183390	12183566	1	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12183390	12183566	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12183567	12183724	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12183725	12183853	1	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12183725	12183853	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12183854	12183961	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12183962	12184036	1	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12183962	12184036	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12184037	12184226	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12184227	12184316	1	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12184227	12184316	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12184317	12184462	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12184463	12184567	1	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12184463	12184567	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12184568	12184742	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12184743	12184777	1	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12184743	12184777	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12184778	12184915	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12184916	12185045	1	+	1	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12184916	12185045	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12185046	12185177	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12185178	12185233	1	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12185178	12185233	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12185234	12185452	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12185453	12185543	1	+	1	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12185453	12185543	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12185544	12185702	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12185703	12185741	1	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12185703	12185741	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12185742	12185822	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12185823	12185901	1	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12185823	12185901	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12185902	12186072	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12186073	12186144	0.98	+	2	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12186073	12186144	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12186145	12186313	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12186314	12186327	0.51	+	2	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12186314	12186327	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12186328	12186424	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12186425	12186598	0.53	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12186425	12186598	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12186599	12186694	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12186695	12186812	0.96	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12186695	12186812	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	intron	12186813	12186905	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	CDS	12186906	12187066	0.96	+	2	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	exon	12186906	12187066	.	+	.	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
Ledus.S5	AUGUSTUS	stop_codon	12187067	12187069	.	+	0	transcript_id "Ledus.S5G126800.t1"; gene_id "Ledus.S5G126800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7843.t1 is derived from g12514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7427437	7427919	.	+	.	Ledus.S5G062100
Ledus.S5	AUGUSTUS	transcript	7427437	7427919	.	+	.	transcript_id "Ledus.S5G062100.t1"; gene_id "Ledus.S5G062100"
Ledus.S5	AUGUSTUS	start_codon	7427437	7427439	.	+	0	transcript_id "Ledus.S5G062100.t1"; gene_id "Ledus.S5G062100"
Ledus.S5	AUGUSTUS	CDS	7427437	7427919	0.48	+	0	transcript_id "Ledus.S5G062100.t1"; gene_id "Ledus.S5G062100"
Ledus.S5	AUGUSTUS	exon	7427437	7427919	.	+	.	transcript_id "Ledus.S5G062100.t1"; gene_id "Ledus.S5G062100"
Ledus.S5	AUGUSTUS	stop_codon	7427920	7427922	.	+	0	transcript_id "Ledus.S5G062100.t1"; gene_id "Ledus.S5G062100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5288.t1 is derived from g2727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22861712	22862888	.	-	.	Ledus.S1G270900
Ledus.S1	AUGUSTUS	transcript	22861712	22862888	.	-	.	transcript_id "Ledus.S1G270900.t1"; gene_id "Ledus.S1G270900"
Ledus.S1	AUGUSTUS	stop_codon	22861709	22861711	.	-	0	transcript_id "Ledus.S1G270900.t1"; gene_id "Ledus.S1G270900"
Ledus.S1	AUGUSTUS	CDS	22861712	22861951	0.63	-	0	transcript_id "Ledus.S1G270900.t1"; gene_id "Ledus.S1G270900"
Ledus.S1	AUGUSTUS	exon	22861712	22861951	.	-	.	transcript_id "Ledus.S1G270900.t1"; gene_id "Ledus.S1G270900"
Ledus.S1	AUGUSTUS	intron	22861952	22862159	.	-	.	transcript_id "Ledus.S1G270900.t1"; gene_id "Ledus.S1G270900"
Ledus.S1	AUGUSTUS	CDS	22862160	22862263	0.35	-	2	transcript_id "Ledus.S1G270900.t1"; gene_id "Ledus.S1G270900"
Ledus.S1	AUGUSTUS	exon	22862160	22862263	.	-	.	transcript_id "Ledus.S1G270900.t1"; gene_id "Ledus.S1G270900"
Ledus.S1	AUGUSTUS	intron	22862264	22862443	.	-	.	transcript_id "Ledus.S1G270900.t1"; gene_id "Ledus.S1G270900"
Ledus.S1	AUGUSTUS	CDS	22862444	22862888	0.97	-	0	transcript_id "Ledus.S1G270900.t1"; gene_id "Ledus.S1G270900"
Ledus.S1	AUGUSTUS	exon	22862444	22862888	.	-	.	transcript_id "Ledus.S1G270900.t1"; gene_id "Ledus.S1G270900"
Ledus.S1	AUGUSTUS	start_codon	22862886	22862888	.	-	0	transcript_id "Ledus.S1G270900.t1"; gene_id "Ledus.S1G270900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4421.t1 is derived from g1857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17034744	17035985	.	-	.	Ledus.S1G184200
Ledus.S1	AUGUSTUS	transcript	17034744	17035985	.	-	.	transcript_id "Ledus.S1G184200.t1"; gene_id "Ledus.S1G184200"
Ledus.S1	AUGUSTUS	stop_codon	17034741	17034743	.	-	0	transcript_id "Ledus.S1G184200.t1"; gene_id "Ledus.S1G184200"
Ledus.S1	AUGUSTUS	CDS	17034744	17035985	0.76	-	0	transcript_id "Ledus.S1G184200.t1"; gene_id "Ledus.S1G184200"
Ledus.S1	AUGUSTUS	exon	17034744	17035985	.	-	.	transcript_id "Ledus.S1G184200.t1"; gene_id "Ledus.S1G184200"
Ledus.S1	AUGUSTUS	start_codon	17035983	17035985	.	-	0	transcript_id "Ledus.S1G184200.t1"; gene_id "Ledus.S1G184200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1046.t1 is derived from g7907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6957135	6959625	.	-	.	Ledus.S2G092800
Ledus.S2	AUGUSTUS	transcript	6957135	6959625	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	stop_codon	6957132	6957134	.	-	0	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	CDS	6957135	6957371	1	-	0	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	exon	6957135	6957371	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	intron	6957372	6957466	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	CDS	6957467	6957572	1	-	1	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	exon	6957467	6957572	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	intron	6957573	6957659	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	CDS	6957660	6957853	1	-	0	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	exon	6957660	6957853	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	intron	6957854	6957951	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	CDS	6957952	6958052	1	-	2	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	exon	6957952	6958052	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	intron	6958053	6958129	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	CDS	6958130	6958250	1	-	0	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	exon	6958130	6958250	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	intron	6958251	6958353	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	CDS	6958354	6958592	0.98	-	2	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	exon	6958354	6958592	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	intron	6958593	6958664	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	CDS	6958665	6958886	1	-	2	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	exon	6958665	6958886	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	intron	6958887	6959216	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	CDS	6959217	6959625	0.41	-	0	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	exon	6959217	6959625	.	-	.	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
Ledus.S2	AUGUSTUS	start_codon	6959623	6959625	.	-	0	transcript_id "Ledus.S2G092800.t1"; gene_id "Ledus.S2G092800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3510.t1 is derived from g945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8971876	8972181	.	-	.	Ledus.S1G093100
Ledus.S1	AUGUSTUS	transcript	8971876	8972181	.	-	.	transcript_id "Ledus.S1G093100.t1"; gene_id "Ledus.S1G093100"
Ledus.S1	AUGUSTUS	stop_codon	8971873	8971875	.	-	0	transcript_id "Ledus.S1G093100.t1"; gene_id "Ledus.S1G093100"
Ledus.S1	AUGUSTUS	CDS	8971876	8972181	0.93	-	0	transcript_id "Ledus.S1G093100.t1"; gene_id "Ledus.S1G093100"
Ledus.S1	AUGUSTUS	exon	8971876	8972181	.	-	.	transcript_id "Ledus.S1G093100.t1"; gene_id "Ledus.S1G093100"
Ledus.S1	AUGUSTUS	start_codon	8972179	8972181	.	-	0	transcript_id "Ledus.S1G093100.t1"; gene_id "Ledus.S1G093100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11209.t1 is derived from g4827.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2716527	2718280	.	+	.	Ledus.S4G036500
Ledus.S4	AUGUSTUS	transcript	2716527	2718280	.	+	.	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	start_codon	2716527	2716529	.	+	0	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	CDS	2716527	2716545	0.61	+	0	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	exon	2716527	2716545	.	+	.	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	intron	2716546	2716659	.	+	.	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	CDS	2716660	2716826	0.62	+	2	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	exon	2716660	2716826	.	+	.	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	intron	2716827	2717765	.	+	.	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	CDS	2717766	2717817	1	+	0	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	exon	2717766	2717817	.	+	.	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	intron	2717818	2718022	.	+	.	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	CDS	2718023	2718089	0.68	+	2	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	exon	2718023	2718089	.	+	.	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	intron	2718090	2718192	.	+	.	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	CDS	2718193	2718280	0.47	+	1	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	exon	2718193	2718280	.	+	.	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
Ledus.S4	AUGUSTUS	stop_codon	2718281	2718283	.	+	0	transcript_id "Ledus.S4G036500.t1"; gene_id "Ledus.S4G036500"
# This transcript jg8989.t2 is derived from g10019.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8990.t1 is derived from g10020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3714095	3716127	.	+	.	Ledus.S3G046700
Ledus.S3	AUGUSTUS	transcript	3714095	3716127	.	+	.	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	start_codon	3714095	3714097	.	+	0	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	CDS	3714095	3714229	0.97	+	0	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	exon	3714095	3714229	.	+	.	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	intron	3714230	3714326	.	+	.	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	CDS	3714327	3715291	1	+	0	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	exon	3714327	3715291	.	+	.	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	intron	3715292	3715374	.	+	.	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	CDS	3715375	3715558	0.63	+	1	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	exon	3715375	3715558	.	+	.	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	intron	3715559	3715670	.	+	.	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	CDS	3715671	3715817	0.52	+	0	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	exon	3715671	3715817	.	+	.	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	intron	3715818	3715986	.	+	.	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	CDS	3715987	3716127	0.66	+	0	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	exon	3715987	3716127	.	+	.	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
Ledus.S3	AUGUSTUS	stop_codon	3716128	3716130	.	+	0	transcript_id "Ledus.S3G046700.t1"; gene_id "Ledus.S3G046700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1203.t1 is derived from g8064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8585464	8588853	.	+	.	Ledus.S2G108500
Ledus.S2	AUGUSTUS	transcript	8585464	8588853	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	start_codon	8585464	8585466	.	+	0	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8585464	8585498	0.89	+	0	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8585464	8585498	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8585499	8585587	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8585588	8585605	0.73	+	1	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8585588	8585605	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8585606	8586047	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8586048	8586191	0.56	+	1	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8586048	8586191	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8586192	8586323	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8586324	8586366	1	+	1	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8586324	8586366	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8586367	8586597	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8586598	8586624	1	+	0	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8586598	8586624	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8586625	8586727	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8586728	8586841	1	+	0	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8586728	8586841	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8586842	8586961	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8586962	8587116	1	+	0	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8586962	8587116	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8587117	8587307	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8587308	8587512	1	+	1	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8587308	8587512	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8587513	8587647	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8587648	8587764	1	+	0	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8587648	8587764	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8587765	8587918	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8587919	8588056	1	+	0	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8587919	8588056	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8588057	8588195	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8588196	8588216	1	+	0	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8588196	8588216	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8588217	8588329	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8588330	8588388	1	+	0	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8588330	8588388	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8588389	8588541	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8588542	8588632	1	+	1	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8588542	8588632	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	intron	8588633	8588769	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	CDS	8588770	8588853	1	+	0	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	exon	8588770	8588853	.	+	.	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
Ledus.S2	AUGUSTUS	stop_codon	8588854	8588856	.	+	0	transcript_id "Ledus.S2G108500.t1"; gene_id "Ledus.S2G108500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4092.t1 is derived from g1528.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14648960	14652260	.	-	.	Ledus.S1G151300
Ledus.S1	AUGUSTUS	transcript	14648960	14652260	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	stop_codon	14648957	14648959	.	-	0	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14648960	14649036	0.69	-	2	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14648960	14649036	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	intron	14649037	14649117	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14649118	14649214	0.81	-	0	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14649118	14649214	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	intron	14649215	14649340	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14649341	14649466	1	-	0	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14649341	14649466	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	intron	14649467	14649557	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14649558	14649714	1	-	1	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14649558	14649714	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	intron	14649715	14649804	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14649805	14649914	1	-	0	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14649805	14649914	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	intron	14649915	14650001	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14650002	14650149	0.99	-	1	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14650002	14650149	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	intron	14650150	14650386	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14650387	14650426	0.74	-	2	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14650387	14650426	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	intron	14650427	14650546	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14650547	14650637	0.98	-	0	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14650547	14650637	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	intron	14650638	14650845	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14650846	14650951	1	-	1	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14650846	14650951	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	intron	14650952	14651037	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14651038	14651137	1	-	2	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14651038	14651137	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	intron	14651138	14651479	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14651480	14651585	1	-	0	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14651480	14651585	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	intron	14651586	14651757	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14651758	14652003	1	-	0	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14651758	14652003	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	intron	14652004	14652092	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	CDS	14652093	14652260	0.76	-	0	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	exon	14652093	14652260	.	-	.	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
Ledus.S1	AUGUSTUS	start_codon	14652258	14652260	.	-	0	transcript_id "Ledus.S1G151300.t1"; gene_id "Ledus.S1G151300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8122.t1 is derived from g12793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9226860	9227117	.	-	.	Ledus.S5G090000
Ledus.S5	AUGUSTUS	transcript	9226860	9227117	.	-	.	transcript_id "Ledus.S5G090000.t1"; gene_id "Ledus.S5G090000"
Ledus.S5	AUGUSTUS	stop_codon	9226857	9226859	.	-	0	transcript_id "Ledus.S5G090000.t1"; gene_id "Ledus.S5G090000"
Ledus.S5	AUGUSTUS	CDS	9226860	9227117	0.62	-	0	transcript_id "Ledus.S5G090000.t1"; gene_id "Ledus.S5G090000"
Ledus.S5	AUGUSTUS	exon	9226860	9227117	.	-	.	transcript_id "Ledus.S5G090000.t1"; gene_id "Ledus.S5G090000"
Ledus.S5	AUGUSTUS	start_codon	9227115	9227117	.	-	0	transcript_id "Ledus.S5G090000.t1"; gene_id "Ledus.S5G090000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10032.t1 is derived from g11062.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12086299	12089004	.	-	.	Ledus.S3G150900
Ledus.S3	AUGUSTUS	transcript	12086299	12089004	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	stop_codon	12086296	12086298	.	-	0	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	CDS	12086299	12086781	0.99	-	0	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	exon	12086299	12086781	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	intron	12086782	12086884	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	CDS	12086885	12086969	0.49	-	1	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	exon	12086885	12086969	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	intron	12086970	12087037	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	CDS	12087038	12087291	0.99	-	0	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	exon	12087038	12087291	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	intron	12087292	12087389	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	CDS	12087390	12087517	1	-	2	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	exon	12087390	12087517	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	intron	12087518	12087618	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	CDS	12087619	12087683	1	-	1	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	exon	12087619	12087683	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	intron	12087684	12087775	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	CDS	12087776	12087910	1	-	1	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	exon	12087776	12087910	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	intron	12087911	12088054	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	CDS	12088055	12088130	1	-	2	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	exon	12088055	12088130	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	intron	12088131	12088208	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	CDS	12088209	12088287	1	-	0	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	exon	12088209	12088287	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	intron	12088288	12088383	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	CDS	12088384	12088458	1	-	0	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	exon	12088384	12088458	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	intron	12088459	12088632	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	CDS	12088633	12089004	0.72	-	0	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	exon	12088633	12089004	.	-	.	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
Ledus.S3	AUGUSTUS	start_codon	12089002	12089004	.	-	0	transcript_id "Ledus.S3G150900.t1"; gene_id "Ledus.S3G150900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7373.t1 is derived from g12044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1683266	1683667	.	-	.	Ledus.S5G015100
Ledus.S5	AUGUSTUS	transcript	1683266	1683667	.	-	.	transcript_id "Ledus.S5G015100.t1"; gene_id "Ledus.S5G015100"
Ledus.S5	AUGUSTUS	stop_codon	1683263	1683265	.	-	0	transcript_id "Ledus.S5G015100.t1"; gene_id "Ledus.S5G015100"
Ledus.S5	AUGUSTUS	CDS	1683266	1683667	0.98	-	0	transcript_id "Ledus.S5G015100.t1"; gene_id "Ledus.S5G015100"
Ledus.S5	AUGUSTUS	exon	1683266	1683667	.	-	.	transcript_id "Ledus.S5G015100.t1"; gene_id "Ledus.S5G015100"
Ledus.S5	AUGUSTUS	start_codon	1683665	1683667	.	-	0	transcript_id "Ledus.S5G015100.t1"; gene_id "Ledus.S5G015100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10268.t1 is derived from g11298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13911994	13917424	.	-	.	Ledus.S3G174500
Ledus.S3	AUGUSTUS	transcript	13911994	13914690	.	-	.	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	stop_codon	13911991	13911993	.	-	0	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13911994	13912145	0.74	-	2	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13911994	13912145	.	-	.	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13912146	13912265	.	-	.	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13912266	13912324	0.97	-	1	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13912266	13912324	.	-	.	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13912325	13912424	.	-	.	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13912425	13912574	1	-	1	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13912425	13912574	.	-	.	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13912575	13912666	.	-	.	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13912667	13912727	1	-	2	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13912667	13912727	.	-	.	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13912728	13913069	.	-	.	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13913070	13913193	0.95	-	0	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13913070	13913193	.	-	.	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13913194	13913313	.	-	.	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13913314	13914690	0.63	-	0	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13913314	13914690	.	-	.	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	start_codon	13914688	13914690	.	-	0	transcript_id "Ledus.S3G174500.t1"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	transcript	13911994	13913634	.	-	.	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	stop_codon	13911991	13911993	.	-	0	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13911994	13912145	0.72	-	2	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13911994	13912145	.	-	.	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13912146	13912265	.	-	.	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13912266	13912324	0.98	-	1	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13912266	13912324	.	-	.	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13912325	13912424	.	-	.	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13912425	13912574	1	-	1	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13912425	13912574	.	-	.	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13912575	13912666	.	-	.	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13912667	13912727	1	-	2	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13912667	13912727	.	-	.	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13912728	13913069	.	-	.	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13913070	13913193	0.96	-	0	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13913070	13913193	.	-	.	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13913194	13913313	.	-	.	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13913314	13913634	0.34	-	0	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13913314	13913634	.	-	.	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	start_codon	13913632	13913634	.	-	0	transcript_id "Ledus.S3G174500.t2"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	transcript	13911994	13917424	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	stop_codon	13911991	13911993	.	-	0	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13911994	13912145	0.7	-	2	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13911994	13912145	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13912146	13912265	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13912266	13912324	0.96	-	1	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13912266	13912324	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13912325	13912424	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13912425	13912574	1	-	1	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13912425	13912574	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13912575	13912666	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13912667	13912727	1	-	2	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13912667	13912727	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13912728	13913069	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13913070	13913193	0.94	-	0	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13913070	13913193	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13913194	13913313	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13913314	13915008	0.51	-	0	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13913314	13915008	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13915009	13915452	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13915453	13915517	0.55	-	2	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13915453	13915517	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13915518	13915639	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13915640	13915697	0.95	-	0	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13915640	13915697	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13915698	13915777	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13915778	13915916	0.98	-	1	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13915778	13915916	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13915917	13916064	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13916065	13916298	0.59	-	1	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13916065	13916298	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13916299	13916481	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13916482	13916644	0.65	-	2	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13916482	13916644	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13916645	13916822	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13916823	13917032	0.2	-	2	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13916823	13917032	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13917033	13917190	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13917191	13917233	0.18	-	0	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13917191	13917233	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	intron	13917234	13917325	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	CDS	13917326	13917424	0.68	-	0	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	exon	13917326	13917424	.	-	.	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
Ledus.S3	AUGUSTUS	start_codon	13917422	13917424	.	-	0	transcript_id "Ledus.S3G174500.t3"; gene_id "Ledus.S3G174500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5470.t1 is derived from g2909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24460437	24462525	.	-	.	Ledus.S1G289100
Ledus.S1	AUGUSTUS	transcript	24460437	24462525	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	stop_codon	24460434	24460436	.	-	0	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	CDS	24460437	24460539	0.39	-	1	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	exon	24460437	24460539	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	intron	24460540	24460685	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	CDS	24460686	24460858	1	-	0	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	exon	24460686	24460858	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	intron	24460859	24460986	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	CDS	24460987	24461073	1	-	0	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	exon	24460987	24461073	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	intron	24461074	24461173	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	CDS	24461174	24461428	0.98	-	0	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	exon	24461174	24461428	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	intron	24461429	24461531	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	CDS	24461532	24461743	1	-	2	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	exon	24461532	24461743	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	intron	24461744	24461869	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	CDS	24461870	24462048	0.99	-	1	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	exon	24461870	24462048	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	intron	24462049	24462196	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	CDS	24462197	24462525	0.9	-	0	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	exon	24462197	24462525	.	-	.	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
Ledus.S1	AUGUSTUS	start_codon	24462523	24462525	.	-	0	transcript_id "Ledus.S1G289100.t1"; gene_id "Ledus.S1G289100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5004.t1 is derived from g2442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21099976	21104055	.	+	.	Ledus.S1G242500
Ledus.S1	AUGUSTUS	transcript	21099976	21104055	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	start_codon	21099976	21099978	.	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21099976	21100030	0.47	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21099976	21100030	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21100031	21100158	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21100159	21100323	1	+	2	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21100159	21100323	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21100324	21100545	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21100546	21100730	1	+	2	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21100546	21100730	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21100731	21100904	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21100905	21101010	1	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21100905	21101010	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21101011	21101148	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21101149	21101225	1	+	2	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21101149	21101225	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21101226	21101424	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21101425	21101512	1	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21101425	21101512	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21101513	21101659	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21101660	21101855	1	+	2	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21101660	21101855	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21101856	21102021	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21102022	21102148	1	+	1	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21102022	21102148	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21102149	21102297	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21102298	21102369	1	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21102298	21102369	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21102370	21102462	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21102463	21102570	1	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21102463	21102570	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21102571	21102719	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21102720	21102815	1	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21102720	21102815	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21102816	21102906	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21102907	21102981	1	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21102907	21102981	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21102982	21103068	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21103069	21103188	1	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21103069	21103188	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21103189	21103276	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21103277	21103405	1	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21103277	21103405	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21103406	21103481	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21103482	21103559	1	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21103482	21103559	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21103560	21103645	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21103646	21103732	1	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21103646	21103732	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	intron	21103733	21103815	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	CDS	21103816	21104055	0.81	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	exon	21103816	21104055	.	+	.	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
Ledus.S1	AUGUSTUS	stop_codon	21104056	21104058	.	+	0	transcript_id "Ledus.S1G242500.t1"; gene_id "Ledus.S1G242500"
# This transcript jg10282.t2 is derived from g11312.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10282.t3 is derived from g11312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10283.t1 is derived from g11313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14005689	14008141	.	+	.	Ledus.S3G176000
Ledus.S3	AUGUSTUS	transcript	14005689	14008141	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	start_codon	14005689	14005691	.	+	0	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	CDS	14005689	14006220	0.97	+	0	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	exon	14005689	14006220	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	intron	14006221	14006382	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	CDS	14006383	14006651	0.59	+	2	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	exon	14006383	14006651	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	intron	14006652	14006745	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	CDS	14006746	14006868	0.99	+	0	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	exon	14006746	14006868	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	intron	14006869	14006960	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	CDS	14006961	14007077	0.98	+	0	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	exon	14006961	14007077	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	intron	14007078	14007188	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	CDS	14007189	14007368	1	+	0	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	exon	14007189	14007368	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	intron	14007369	14007450	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	CDS	14007451	14007592	1	+	0	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	exon	14007451	14007592	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	intron	14007593	14007722	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	CDS	14007723	14007806	0.98	+	2	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	exon	14007723	14007806	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	intron	14007807	14008001	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	CDS	14008002	14008141	0.86	+	2	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	exon	14008002	14008141	.	+	.	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
Ledus.S3	AUGUSTUS	stop_codon	14008142	14008144	.	+	0	transcript_id "Ledus.S3G176000.t1"; gene_id "Ledus.S3G176000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2018.t1 is derived from g8881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14203700	14204385	.	-	.	Ledus.S2G190000
Ledus.S2	AUGUSTUS	transcript	14203700	14204385	.	-	.	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	stop_codon	14203697	14203699	.	-	0	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	CDS	14203700	14203778	1	-	1	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	exon	14203700	14203778	.	-	.	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	intron	14203779	14203855	.	-	.	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	CDS	14203856	14203935	1	-	0	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	exon	14203856	14203935	.	-	.	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	intron	14203936	14204017	.	-	.	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	CDS	14204018	14204164	0.6	-	0	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	exon	14204018	14204164	.	-	.	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	intron	14204165	14204247	.	-	.	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	CDS	14204248	14204385	0.6	-	0	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	exon	14204248	14204385	.	-	.	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
Ledus.S2	AUGUSTUS	start_codon	14204383	14204385	.	-	0	transcript_id "Ledus.S2G190000.t1"; gene_id "Ledus.S2G190000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12109.t1 is derived from g5728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9542785	9543616	.	+	.	Ledus.S4G126500
Ledus.S4	AUGUSTUS	transcript	9542785	9543616	.	+	.	transcript_id "Ledus.S4G126500.t1"; gene_id "Ledus.S4G126500"
Ledus.S4	AUGUSTUS	start_codon	9542785	9542787	.	+	0	transcript_id "Ledus.S4G126500.t1"; gene_id "Ledus.S4G126500"
Ledus.S4	AUGUSTUS	CDS	9542785	9543373	0.59	+	0	transcript_id "Ledus.S4G126500.t1"; gene_id "Ledus.S4G126500"
Ledus.S4	AUGUSTUS	exon	9542785	9543373	.	+	.	transcript_id "Ledus.S4G126500.t1"; gene_id "Ledus.S4G126500"
Ledus.S4	AUGUSTUS	intron	9543374	9543443	.	+	.	transcript_id "Ledus.S4G126500.t1"; gene_id "Ledus.S4G126500"
Ledus.S4	AUGUSTUS	CDS	9543444	9543510	0.99	+	2	transcript_id "Ledus.S4G126500.t1"; gene_id "Ledus.S4G126500"
Ledus.S4	AUGUSTUS	exon	9543444	9543510	.	+	.	transcript_id "Ledus.S4G126500.t1"; gene_id "Ledus.S4G126500"
Ledus.S4	AUGUSTUS	intron	9543511	9543600	.	+	.	transcript_id "Ledus.S4G126500.t1"; gene_id "Ledus.S4G126500"
Ledus.S4	AUGUSTUS	CDS	9543601	9543616	1	+	1	transcript_id "Ledus.S4G126500.t1"; gene_id "Ledus.S4G126500"
Ledus.S4	AUGUSTUS	exon	9543601	9543616	.	+	.	transcript_id "Ledus.S4G126500.t1"; gene_id "Ledus.S4G126500"
Ledus.S4	AUGUSTUS	stop_codon	9543617	9543619	.	+	0	transcript_id "Ledus.S4G126500.t1"; gene_id "Ledus.S4G126500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5232.t1 is derived from g2671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22614642	22615121	.	-	.	Ledus.S1G265300
Ledus.S1	AUGUSTUS	transcript	22614642	22615121	.	-	.	transcript_id "Ledus.S1G265300.t1"; gene_id "Ledus.S1G265300"
Ledus.S1	AUGUSTUS	stop_codon	22614639	22614641	.	-	0	transcript_id "Ledus.S1G265300.t1"; gene_id "Ledus.S1G265300"
Ledus.S1	AUGUSTUS	CDS	22614642	22614968	0.84	-	0	transcript_id "Ledus.S1G265300.t1"; gene_id "Ledus.S1G265300"
Ledus.S1	AUGUSTUS	exon	22614642	22614968	.	-	.	transcript_id "Ledus.S1G265300.t1"; gene_id "Ledus.S1G265300"
Ledus.S1	AUGUSTUS	intron	22614969	22615046	.	-	.	transcript_id "Ledus.S1G265300.t1"; gene_id "Ledus.S1G265300"
Ledus.S1	AUGUSTUS	CDS	22615047	22615121	0.71	-	0	transcript_id "Ledus.S1G265300.t1"; gene_id "Ledus.S1G265300"
Ledus.S1	AUGUSTUS	exon	22615047	22615121	.	-	.	transcript_id "Ledus.S1G265300.t1"; gene_id "Ledus.S1G265300"
Ledus.S1	AUGUSTUS	start_codon	22615119	22615121	.	-	0	transcript_id "Ledus.S1G265300.t1"; gene_id "Ledus.S1G265300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8764.t1 is derived from g9794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1881344	1882547	.	-	.	Ledus.S3G024100
Ledus.S3	AUGUSTUS	transcript	1881344	1882547	.	-	.	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	stop_codon	1881341	1881343	.	-	0	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	CDS	1881344	1881459	1	-	2	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	exon	1881344	1881459	.	-	.	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	intron	1881460	1881531	.	-	.	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	CDS	1881532	1881619	1	-	0	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	exon	1881532	1881619	.	-	.	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	intron	1881620	1881714	.	-	.	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	CDS	1881715	1881803	1	-	2	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	exon	1881715	1881803	.	-	.	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	intron	1881804	1881878	.	-	.	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	CDS	1881879	1882070	1	-	2	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	exon	1881879	1882070	.	-	.	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	intron	1882071	1882147	.	-	.	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	CDS	1882148	1882289	0.99	-	0	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	exon	1882148	1882289	.	-	.	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	intron	1882290	1882412	.	-	.	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	CDS	1882413	1882547	0.9	-	0	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	exon	1882413	1882547	.	-	.	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
Ledus.S3	AUGUSTUS	start_codon	1882545	1882547	.	-	0	transcript_id "Ledus.S3G024100.t1"; gene_id "Ledus.S3G024100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7293.t1 is derived from g11964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	838628	839310	.	+	.	Ledus.S5G007100
Ledus.S5	AUGUSTUS	transcript	838628	839310	.	+	.	transcript_id "Ledus.S5G007100.t1"; gene_id "Ledus.S5G007100"
Ledus.S5	AUGUSTUS	start_codon	838628	838630	.	+	0	transcript_id "Ledus.S5G007100.t1"; gene_id "Ledus.S5G007100"
Ledus.S5	AUGUSTUS	CDS	838628	838801	0.85	+	0	transcript_id "Ledus.S5G007100.t1"; gene_id "Ledus.S5G007100"
Ledus.S5	AUGUSTUS	exon	838628	838801	.	+	.	transcript_id "Ledus.S5G007100.t1"; gene_id "Ledus.S5G007100"
Ledus.S5	AUGUSTUS	intron	838802	838902	.	+	.	transcript_id "Ledus.S5G007100.t1"; gene_id "Ledus.S5G007100"
Ledus.S5	AUGUSTUS	CDS	838903	839310	0.84	+	0	transcript_id "Ledus.S5G007100.t1"; gene_id "Ledus.S5G007100"
Ledus.S5	AUGUSTUS	exon	838903	839310	.	+	.	transcript_id "Ledus.S5G007100.t1"; gene_id "Ledus.S5G007100"
Ledus.S5	AUGUSTUS	stop_codon	839311	839313	.	+	0	transcript_id "Ledus.S5G007100.t1"; gene_id "Ledus.S5G007100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6886.t1 is derived from g4330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34949328	34949633	.	-	.	Ledus.S1G430700
Ledus.S1	AUGUSTUS	transcript	34949328	34949633	.	-	.	transcript_id "Ledus.S1G430700.t1"; gene_id "Ledus.S1G430700"
Ledus.S1	AUGUSTUS	stop_codon	34949325	34949327	.	-	0	transcript_id "Ledus.S1G430700.t1"; gene_id "Ledus.S1G430700"
Ledus.S1	AUGUSTUS	CDS	34949328	34949633	0.92	-	0	transcript_id "Ledus.S1G430700.t1"; gene_id "Ledus.S1G430700"
Ledus.S1	AUGUSTUS	exon	34949328	34949633	.	-	.	transcript_id "Ledus.S1G430700.t1"; gene_id "Ledus.S1G430700"
Ledus.S1	AUGUSTUS	start_codon	34949631	34949633	.	-	0	transcript_id "Ledus.S1G430700.t1"; gene_id "Ledus.S1G430700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10515.t1 is derived from g11545.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15755006	15757569	.	-	.	Ledus.S3G199200
Ledus.S3	AUGUSTUS	transcript	15755006	15757569	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	stop_codon	15755003	15755005	.	-	0	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15755006	15755125	0.87	-	0	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15755006	15755125	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15755126	15755517	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15755518	15755811	1	-	0	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15755518	15755811	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15755812	15755906	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15755907	15756020	1	-	0	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15755907	15756020	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15756021	15756102	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15756103	15756170	1	-	2	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15756103	15756170	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15756171	15756266	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15756267	15756475	0.99	-	1	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15756267	15756475	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15756476	15756603	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15756604	15756713	1	-	0	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15756604	15756713	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15756714	15756802	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15756803	15756889	1	-	0	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15756803	15756889	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15756890	15756987	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15756988	15757056	1	-	0	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15756988	15757056	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15757057	15757216	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15757217	15757316	1	-	1	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15757217	15757316	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15757317	15757498	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15757499	15757569	0.86	-	0	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15757499	15757569	.	-	.	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	start_codon	15757567	15757569	.	-	0	transcript_id "Ledus.S3G199200.t1"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	transcript	15755006	15757565	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	stop_codon	15755003	15755005	.	-	0	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15755006	15755125	0.81	-	0	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15755006	15755125	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15755126	15755517	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15755518	15755811	1	-	0	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15755518	15755811	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15755812	15755906	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15755907	15756020	1	-	0	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15755907	15756020	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15756021	15756102	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15756103	15756170	1	-	2	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15756103	15756170	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15756171	15756266	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15756267	15756475	0.98	-	1	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15756267	15756475	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15756476	15756603	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15756604	15756713	1	-	0	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15756604	15756713	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15756714	15756802	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15756803	15756889	1	-	0	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15756803	15756889	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15756890	15756987	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15756988	15757056	1	-	0	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15756988	15757056	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15757057	15757216	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15757217	15757308	0.63	-	2	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15757217	15757308	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	intron	15757309	15757498	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	CDS	15757499	15757565	0.47	-	0	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	exon	15757499	15757565	.	-	.	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
Ledus.S3	AUGUSTUS	start_codon	15757563	15757565	.	-	0	transcript_id "Ledus.S3G199200.t2"; gene_id "Ledus.S3G199200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2519.t1 is derived from g9382.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18566826	18568930	.	+	.	Ledus.S2G240100
Ledus.S2	AUGUSTUS	transcript	18566826	18568930	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	start_codon	18566826	18566828	.	+	0	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	CDS	18566826	18566912	0.58	+	0	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	exon	18566826	18566912	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	intron	18566913	18567248	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	CDS	18567249	18567270	0.57	+	0	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	exon	18567249	18567270	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	intron	18567271	18567448	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	CDS	18567449	18567553	1	+	2	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	exon	18567449	18567553	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	intron	18567554	18567678	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	CDS	18567679	18567802	1	+	2	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	exon	18567679	18567802	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	intron	18567803	18567884	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	CDS	18567885	18567956	1	+	1	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	exon	18567885	18567956	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	intron	18567957	18568093	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	CDS	18568094	18568142	1	+	1	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	exon	18568094	18568142	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	intron	18568143	18568273	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	CDS	18568274	18568628	1	+	0	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	exon	18568274	18568628	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	intron	18568629	18568728	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	CDS	18568729	18568749	0.98	+	2	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	exon	18568729	18568749	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	intron	18568750	18568844	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	CDS	18568845	18568930	0.98	+	2	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	exon	18568845	18568930	.	+	.	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
Ledus.S2	AUGUSTUS	stop_codon	18569094	18569096	.	+	0	transcript_id "Ledus.S2G240100.t1"; gene_id "Ledus.S2G240100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8156.t1 is derived from g12827.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9450303	9454495	.	-	.	Ledus.S5G093400
Ledus.S5	AUGUSTUS	transcript	9450303	9454495	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	stop_codon	9450300	9450302	.	-	0	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9450303	9450518	0.53	-	0	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9450303	9450518	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9450519	9450628	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9450629	9450775	0.67	-	0	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9450629	9450775	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9450776	9450856	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9450857	9451001	1	-	1	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9450857	9451001	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9451002	9451098	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9451099	9451244	1	-	0	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9451099	9451244	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9451245	9451328	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9451329	9451420	0.98	-	2	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9451329	9451420	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9451421	9451531	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9451532	9451583	0.96	-	0	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9451532	9451583	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9451584	9451738	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9451739	9451983	0.53	-	2	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9451739	9451983	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9451984	9452069	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9452070	9452443	0.99	-	1	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9452070	9452443	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9452444	9452522	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9452523	9452570	1	-	1	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9452523	9452570	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9452571	9452661	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9452662	9452730	1	-	1	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9452662	9452730	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9452731	9452816	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9452817	9452891	1	-	1	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9452817	9452891	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9452892	9452963	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9452964	9453035	1	-	1	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9452964	9453035	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9453036	9453130	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9453131	9453202	1	-	1	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9453131	9453202	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9453203	9453293	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9453294	9453365	1	-	1	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9453294	9453365	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9453366	9453442	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9453443	9453511	1	-	1	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9453443	9453511	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9453512	9453596	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9453597	9453668	1	-	1	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9453597	9453668	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9453669	9453763	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9453764	9453835	1	-	1	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9453764	9453835	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9453836	9453933	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9453934	9454122	1	-	1	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9453934	9454122	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9454123	9454197	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9454198	9454327	1	-	2	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9454198	9454327	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	intron	9454328	9454407	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	CDS	9454408	9454495	0.83	-	0	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	exon	9454408	9454495	.	-	.	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
Ledus.S5	AUGUSTUS	start_codon	9454493	9454495	.	-	0	transcript_id "Ledus.S5G093400.t1"; gene_id "Ledus.S5G093400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10862.t1 is derived from g4480.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	153527	155773	.	+	.	Ledus.S4G001800
Ledus.S4	AUGUSTUS	transcript	153527	155037	.	+	.	transcript_id "Ledus.S4G001800.t1"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	start_codon	153527	153529	.	+	0	transcript_id "Ledus.S4G001800.t1"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	CDS	153527	154849	0.65	+	0	transcript_id "Ledus.S4G001800.t1"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	exon	153527	154849	.	+	.	transcript_id "Ledus.S4G001800.t1"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	intron	154850	154989	.	+	.	transcript_id "Ledus.S4G001800.t1"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	CDS	154990	155037	0.73	+	0	transcript_id "Ledus.S4G001800.t1"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	exon	154990	155037	.	+	.	transcript_id "Ledus.S4G001800.t1"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	stop_codon	155038	155040	.	+	0	transcript_id "Ledus.S4G001800.t1"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	transcript	154379	155773	.	+	.	transcript_id "Ledus.S4G001800.t2"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	start_codon	154379	154381	.	+	0	transcript_id "Ledus.S4G001800.t2"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	CDS	154379	155773	0.99	+	0	transcript_id "Ledus.S4G001800.t2"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	exon	154379	155773	.	+	.	transcript_id "Ledus.S4G001800.t2"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	stop_codon	155774	155776	.	+	0	transcript_id "Ledus.S4G001800.t2"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	transcript	153527	155773	.	+	.	transcript_id "Ledus.S4G001800.t3"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	start_codon	153527	153529	.	+	0	transcript_id "Ledus.S4G001800.t3"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	CDS	153527	155773	0.96	+	0	transcript_id "Ledus.S4G001800.t3"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	exon	153527	155773	.	+	.	transcript_id "Ledus.S4G001800.t3"; gene_id "Ledus.S4G001800"
Ledus.S4	AUGUSTUS	stop_codon	155774	155776	.	+	0	transcript_id "Ledus.S4G001800.t3"; gene_id "Ledus.S4G001800"
# This transcript jg2902.t2 is derived from g337.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2902.t3 is derived from g337.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2903.t1 is derived from g338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4494056	4495498	.	-	.	Ledus.S1G032400
Ledus.S1	AUGUSTUS	transcript	4494056	4495498	.	-	.	transcript_id "Ledus.S1G032400.t1"; gene_id "Ledus.S1G032400"
Ledus.S1	AUGUSTUS	stop_codon	4494053	4494055	.	-	0	transcript_id "Ledus.S1G032400.t1"; gene_id "Ledus.S1G032400"
Ledus.S1	AUGUSTUS	CDS	4494056	4495498	0.82	-	0	transcript_id "Ledus.S1G032400.t1"; gene_id "Ledus.S1G032400"
Ledus.S1	AUGUSTUS	exon	4494056	4495498	.	-	.	transcript_id "Ledus.S1G032400.t1"; gene_id "Ledus.S1G032400"
Ledus.S1	AUGUSTUS	start_codon	4495496	4495498	.	-	0	transcript_id "Ledus.S1G032400.t1"; gene_id "Ledus.S1G032400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6009.t1 is derived from g3452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28252785	28253087	.	+	.	Ledus.S1G343000
Ledus.S1	AUGUSTUS	transcript	28252785	28253087	.	+	.	transcript_id "Ledus.S1G343000.t1"; gene_id "Ledus.S1G343000"
Ledus.S1	AUGUSTUS	start_codon	28252785	28252787	.	+	0	transcript_id "Ledus.S1G343000.t1"; gene_id "Ledus.S1G343000"
Ledus.S1	AUGUSTUS	CDS	28252785	28253087	0.76	+	0	transcript_id "Ledus.S1G343000.t1"; gene_id "Ledus.S1G343000"
Ledus.S1	AUGUSTUS	exon	28252785	28253087	.	+	.	transcript_id "Ledus.S1G343000.t1"; gene_id "Ledus.S1G343000"
Ledus.S1	AUGUSTUS	stop_codon	28253088	28253090	.	+	0	transcript_id "Ledus.S1G343000.t1"; gene_id "Ledus.S1G343000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2080.t1 is derived from g8943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14626971	14633383	.	+	.	Ledus.S2G196200
Ledus.S2	AUGUSTUS	transcript	14626971	14633383	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	start_codon	14626971	14626973	.	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14626971	14627036	0.4	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14626971	14627036	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14627037	14627177	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14627178	14627250	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14627178	14627250	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14627251	14627428	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14627429	14627505	1	+	2	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14627429	14627505	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14627506	14627594	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14627595	14627708	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14627595	14627708	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14627709	14627811	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14627812	14627886	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14627812	14627886	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14627887	14628083	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14628084	14628191	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14628084	14628191	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14628192	14628339	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14628340	14628552	0.98	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14628340	14628552	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14628553	14628643	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14628644	14628705	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14628644	14628705	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14628706	14628791	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14628792	14628819	1	+	1	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14628792	14628819	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14628820	14629030	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14629031	14629117	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14629031	14629117	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14629118	14629216	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14629217	14629242	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14629217	14629242	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14629243	14629350	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14629351	14629414	1	+	1	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14629351	14629414	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14629415	14629568	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14629569	14629649	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14629569	14629649	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14629650	14629848	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14629849	14629896	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14629849	14629896	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14629897	14630335	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14630336	14630347	0.86	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14630336	14630347	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14630348	14630454	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14630455	14630511	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14630455	14630511	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14630512	14630645	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14630646	14630755	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14630646	14630755	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14630756	14630909	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14630910	14630990	1	+	1	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14630910	14630990	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14630991	14631122	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14631123	14631313	1	+	1	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14631123	14631313	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14631314	14631447	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14631448	14631592	1	+	2	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14631448	14631592	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14631593	14631723	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14631724	14631862	1	+	1	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14631724	14631862	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14631863	14631943	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14631944	14632090	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14631944	14632090	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14632091	14632213	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14632214	14632295	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14632214	14632295	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14632296	14632389	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14632390	14632565	1	+	2	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14632390	14632565	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14632566	14632653	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14632654	14632764	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14632654	14632764	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14632765	14632857	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14632858	14632974	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14632858	14632974	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14632975	14633110	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14633111	14633182	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14633111	14633182	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	intron	14633183	14633305	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	CDS	14633306	14633383	1	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	exon	14633306	14633383	.	+	.	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
Ledus.S2	AUGUSTUS	stop_codon	14633384	14633386	.	+	0	transcript_id "Ledus.S2G196200.t1"; gene_id "Ledus.S2G196200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12539.t1 is derived from g6161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12800356	12804791	.	+	.	Ledus.S4G169500
Ledus.S4	AUGUSTUS	transcript	12800356	12804791	.	+	.	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	start_codon	12800356	12800358	.	+	0	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	CDS	12800356	12801664	0.36	+	0	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	exon	12800356	12801664	.	+	.	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	intron	12801665	12802049	.	+	.	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	CDS	12802050	12803279	1	+	2	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	exon	12802050	12803279	.	+	.	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	intron	12803280	12803379	.	+	.	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	CDS	12803380	12804173	0.99	+	2	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	exon	12803380	12804173	.	+	.	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	intron	12804174	12804251	.	+	.	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	CDS	12804252	12804467	0.98	+	0	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	exon	12804252	12804467	.	+	.	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	intron	12804468	12804575	.	+	.	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	CDS	12804576	12804791	0.97	+	0	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	exon	12804576	12804791	.	+	.	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
Ledus.S4	AUGUSTUS	stop_codon	12804792	12804794	.	+	0	transcript_id "Ledus.S4G169500.t1"; gene_id "Ledus.S4G169500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7755.t1 is derived from g12426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6024328	6024660	.	-	.	Ledus.S5G053300
Ledus.S5	AUGUSTUS	transcript	6024328	6024660	.	-	.	transcript_id "Ledus.S5G053300.t1"; gene_id "Ledus.S5G053300"
Ledus.S5	AUGUSTUS	stop_codon	6024325	6024327	.	-	0	transcript_id "Ledus.S5G053300.t1"; gene_id "Ledus.S5G053300"
Ledus.S5	AUGUSTUS	CDS	6024328	6024660	0.42	-	0	transcript_id "Ledus.S5G053300.t1"; gene_id "Ledus.S5G053300"
Ledus.S5	AUGUSTUS	exon	6024328	6024660	.	-	.	transcript_id "Ledus.S5G053300.t1"; gene_id "Ledus.S5G053300"
Ledus.S5	AUGUSTUS	start_codon	6024658	6024660	.	-	0	transcript_id "Ledus.S5G053300.t1"; gene_id "Ledus.S5G053300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10343.t1 is derived from g11373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14331915	14334044	.	-	.	Ledus.S3G182000
Ledus.S3	AUGUSTUS	transcript	14331915	14334044	.	-	.	transcript_id "Ledus.S3G182000.t1"; gene_id "Ledus.S3G182000"
Ledus.S3	AUGUSTUS	stop_codon	14331912	14331914	.	-	0	transcript_id "Ledus.S3G182000.t1"; gene_id "Ledus.S3G182000"
Ledus.S3	AUGUSTUS	CDS	14331915	14334044	0.99	-	0	transcript_id "Ledus.S3G182000.t1"; gene_id "Ledus.S3G182000"
Ledus.S3	AUGUSTUS	exon	14331915	14334044	.	-	.	transcript_id "Ledus.S3G182000.t1"; gene_id "Ledus.S3G182000"
Ledus.S3	AUGUSTUS	start_codon	14334042	14334044	.	-	0	transcript_id "Ledus.S3G182000.t1"; gene_id "Ledus.S3G182000"
Ledus.S3	AUGUSTUS	transcript	14331915	14333567	.	-	.	transcript_id "Ledus.S3G182000.t2"; gene_id "Ledus.S3G182000"
Ledus.S3	AUGUSTUS	stop_codon	14331912	14331914	.	-	0	transcript_id "Ledus.S3G182000.t2"; gene_id "Ledus.S3G182000"
Ledus.S3	AUGUSTUS	CDS	14331915	14333567	0.98	-	0	transcript_id "Ledus.S3G182000.t2"; gene_id "Ledus.S3G182000"
Ledus.S3	AUGUSTUS	exon	14331915	14333567	.	-	.	transcript_id "Ledus.S3G182000.t2"; gene_id "Ledus.S3G182000"
Ledus.S3	AUGUSTUS	start_codon	14333565	14333567	.	-	0	transcript_id "Ledus.S3G182000.t2"; gene_id "Ledus.S3G182000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2821.t1 is derived from g255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3946202	3947619	.	+	.	Ledus.S1G024200
Ledus.S1	AUGUSTUS	transcript	3946202	3947619	.	+	.	transcript_id "Ledus.S1G024200.t1"; gene_id "Ledus.S1G024200"
Ledus.S1	AUGUSTUS	start_codon	3946202	3946204	.	+	0	transcript_id "Ledus.S1G024200.t1"; gene_id "Ledus.S1G024200"
Ledus.S1	AUGUSTUS	CDS	3946202	3946244	0.96	+	0	transcript_id "Ledus.S1G024200.t1"; gene_id "Ledus.S1G024200"
Ledus.S1	AUGUSTUS	exon	3946202	3946244	.	+	.	transcript_id "Ledus.S1G024200.t1"; gene_id "Ledus.S1G024200"
Ledus.S1	AUGUSTUS	intron	3946245	3946375	.	+	.	transcript_id "Ledus.S1G024200.t1"; gene_id "Ledus.S1G024200"
Ledus.S1	AUGUSTUS	CDS	3946376	3947619	0.88	+	2	transcript_id "Ledus.S1G024200.t1"; gene_id "Ledus.S1G024200"
Ledus.S1	AUGUSTUS	exon	3946376	3947619	.	+	.	transcript_id "Ledus.S1G024200.t1"; gene_id "Ledus.S1G024200"
Ledus.S1	AUGUSTUS	stop_codon	3947620	3947622	.	+	0	transcript_id "Ledus.S1G024200.t1"; gene_id "Ledus.S1G024200"
# This transcript jg7034.t2 is derived from g6565.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7035.t1 is derived from g6566.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	947553	949652	.	-	.	Ledus.C7G009600
Ledus.C7	AUGUSTUS	transcript	948065	949652	.	-	.	transcript_id "Ledus.C7G009600.t1"; gene_id "Ledus.C7G009600"
Ledus.C7	AUGUSTUS	stop_codon	948062	948064	.	-	0	transcript_id "Ledus.C7G009600.t1"; gene_id "Ledus.C7G009600"
Ledus.C7	AUGUSTUS	CDS	948065	948081	1	-	2	transcript_id "Ledus.C7G009600.t1"; gene_id "Ledus.C7G009600"
Ledus.C7	AUGUSTUS	exon	948065	948081	.	-	.	transcript_id "Ledus.C7G009600.t1"; gene_id "Ledus.C7G009600"
Ledus.C7	AUGUSTUS	intron	948082	948178	.	-	.	transcript_id "Ledus.C7G009600.t1"; gene_id "Ledus.C7G009600"
Ledus.C7	AUGUSTUS	CDS	948179	949652	0.99	-	0	transcript_id "Ledus.C7G009600.t1"; gene_id "Ledus.C7G009600"
Ledus.C7	AUGUSTUS	exon	948179	949652	.	-	.	transcript_id "Ledus.C7G009600.t1"; gene_id "Ledus.C7G009600"
Ledus.C7	AUGUSTUS	start_codon	949650	949652	.	-	0	transcript_id "Ledus.C7G009600.t1"; gene_id "Ledus.C7G009600"
Ledus.C7	AUGUSTUS	transcript	947553	949652	.	-	.	transcript_id "Ledus.C7G009600.t2"; gene_id "Ledus.C7G009600"
Ledus.C7	AUGUSTUS	stop_codon	947550	947552	.	-	0	transcript_id "Ledus.C7G009600.t2"; gene_id "Ledus.C7G009600"
Ledus.C7	AUGUSTUS	CDS	947553	949652	1	-	0	transcript_id "Ledus.C7G009600.t2"; gene_id "Ledus.C7G009600"
Ledus.C7	AUGUSTUS	exon	947553	949652	.	-	.	transcript_id "Ledus.C7G009600.t2"; gene_id "Ledus.C7G009600"
Ledus.C7	AUGUSTUS	start_codon	949650	949652	.	-	0	transcript_id "Ledus.C7G009600.t2"; gene_id "Ledus.C7G009600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9050.t1 is derived from g10080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4177253	4178272	.	+	.	Ledus.S3G052700
Ledus.S3	AUGUSTUS	transcript	4177253	4178272	.	+	.	transcript_id "Ledus.S3G052700.t1"; gene_id "Ledus.S3G052700"
Ledus.S3	AUGUSTUS	start_codon	4177253	4177255	.	+	0	transcript_id "Ledus.S3G052700.t1"; gene_id "Ledus.S3G052700"
Ledus.S3	AUGUSTUS	CDS	4177253	4177381	1	+	0	transcript_id "Ledus.S3G052700.t1"; gene_id "Ledus.S3G052700"
Ledus.S3	AUGUSTUS	exon	4177253	4177381	.	+	.	transcript_id "Ledus.S3G052700.t1"; gene_id "Ledus.S3G052700"
Ledus.S3	AUGUSTUS	intron	4177382	4177661	.	+	.	transcript_id "Ledus.S3G052700.t1"; gene_id "Ledus.S3G052700"
Ledus.S3	AUGUSTUS	CDS	4177662	4177793	1	+	0	transcript_id "Ledus.S3G052700.t1"; gene_id "Ledus.S3G052700"
Ledus.S3	AUGUSTUS	exon	4177662	4177793	.	+	.	transcript_id "Ledus.S3G052700.t1"; gene_id "Ledus.S3G052700"
Ledus.S3	AUGUSTUS	intron	4177794	4177954	.	+	.	transcript_id "Ledus.S3G052700.t1"; gene_id "Ledus.S3G052700"
Ledus.S3	AUGUSTUS	CDS	4177955	4178272	1	+	0	transcript_id "Ledus.S3G052700.t1"; gene_id "Ledus.S3G052700"
Ledus.S3	AUGUSTUS	exon	4177955	4178272	.	+	.	transcript_id "Ledus.S3G052700.t1"; gene_id "Ledus.S3G052700"
Ledus.S3	AUGUSTUS	stop_codon	4178273	4178275	.	+	0	transcript_id "Ledus.S3G052700.t1"; gene_id "Ledus.S3G052700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9096.t1 is derived from g10126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4559012	4561533	.	-	.	Ledus.S3G057300
Ledus.S3	AUGUSTUS	transcript	4559012	4561533	.	-	.	transcript_id "Ledus.S3G057300.t1"; gene_id "Ledus.S3G057300"
Ledus.S3	AUGUSTUS	stop_codon	4559009	4559011	.	-	0	transcript_id "Ledus.S3G057300.t1"; gene_id "Ledus.S3G057300"
Ledus.S3	AUGUSTUS	CDS	4559012	4560982	0.83	-	0	transcript_id "Ledus.S3G057300.t1"; gene_id "Ledus.S3G057300"
Ledus.S3	AUGUSTUS	exon	4559012	4560982	.	-	.	transcript_id "Ledus.S3G057300.t1"; gene_id "Ledus.S3G057300"
Ledus.S3	AUGUSTUS	intron	4560983	4561374	.	-	.	transcript_id "Ledus.S3G057300.t1"; gene_id "Ledus.S3G057300"
Ledus.S3	AUGUSTUS	CDS	4561375	4561533	0.9	-	0	transcript_id "Ledus.S3G057300.t1"; gene_id "Ledus.S3G057300"
Ledus.S3	AUGUSTUS	exon	4561375	4561533	.	-	.	transcript_id "Ledus.S3G057300.t1"; gene_id "Ledus.S3G057300"
Ledus.S3	AUGUSTUS	start_codon	4561531	4561533	.	-	0	transcript_id "Ledus.S3G057300.t1"; gene_id "Ledus.S3G057300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10094.t1 is derived from g11124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12608292	12608836	.	-	.	Ledus.S3G157100
Ledus.S3	AUGUSTUS	transcript	12608292	12608836	.	-	.	transcript_id "Ledus.S3G157100.t1"; gene_id "Ledus.S3G157100"
Ledus.S3	AUGUSTUS	stop_codon	12608289	12608291	.	-	0	transcript_id "Ledus.S3G157100.t1"; gene_id "Ledus.S3G157100"
Ledus.S3	AUGUSTUS	CDS	12608292	12608305	0.94	-	2	transcript_id "Ledus.S3G157100.t1"; gene_id "Ledus.S3G157100"
Ledus.S3	AUGUSTUS	exon	12608292	12608305	.	-	.	transcript_id "Ledus.S3G157100.t1"; gene_id "Ledus.S3G157100"
Ledus.S3	AUGUSTUS	intron	12608306	12608395	.	-	.	transcript_id "Ledus.S3G157100.t1"; gene_id "Ledus.S3G157100"
Ledus.S3	AUGUSTUS	CDS	12608396	12608427	0.76	-	1	transcript_id "Ledus.S3G157100.t1"; gene_id "Ledus.S3G157100"
Ledus.S3	AUGUSTUS	exon	12608396	12608427	.	-	.	transcript_id "Ledus.S3G157100.t1"; gene_id "Ledus.S3G157100"
Ledus.S3	AUGUSTUS	intron	12608428	12608492	.	-	.	transcript_id "Ledus.S3G157100.t1"; gene_id "Ledus.S3G157100"
Ledus.S3	AUGUSTUS	CDS	12608493	12608836	0.8	-	0	transcript_id "Ledus.S3G157100.t1"; gene_id "Ledus.S3G157100"
Ledus.S3	AUGUSTUS	exon	12608493	12608836	.	-	.	transcript_id "Ledus.S3G157100.t1"; gene_id "Ledus.S3G157100"
Ledus.S3	AUGUSTUS	start_codon	12608834	12608836	.	-	0	transcript_id "Ledus.S3G157100.t1"; gene_id "Ledus.S3G157100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg481.t1 is derived from g7342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2830517	2835414	.	-	.	Ledus.S2G036300
Ledus.S2	AUGUSTUS	transcript	2830517	2835414	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	stop_codon	2830514	2830516	.	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2830517	2830528	0.68	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2830517	2830528	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2830529	2830621	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2830622	2830648	0.53	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2830622	2830648	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2830649	2830713	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2830714	2830725	0.68	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2830714	2830725	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2830726	2830821	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2830822	2830893	1	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2830822	2830893	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2830894	2830985	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2830986	2831048	1	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2830986	2831048	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2831049	2831124	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2831125	2831230	1	-	1	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2831125	2831230	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2831231	2831363	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2831364	2831458	1	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2831364	2831458	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2831459	2831545	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2831546	2831575	1	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2831546	2831575	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2831576	2831699	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2831700	2831771	1	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2831700	2831771	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2831772	2831866	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2831867	2831926	1	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2831867	2831926	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2831927	2832038	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2832039	2832085	0.99	-	2	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2832039	2832085	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2832086	2832175	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2832176	2832240	1	-	1	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2832176	2832240	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2832241	2832333	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2832334	2832422	1	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2832334	2832422	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2832423	2832601	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2832602	2832640	1	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2832602	2832640	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2832641	2832799	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2832800	2832859	1	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2832800	2832859	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2832860	2833017	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2833018	2833090	1	-	1	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2833018	2833090	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2833091	2833288	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2833289	2833458	1	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2833289	2833458	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2833459	2833548	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2833549	2833629	1	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2833549	2833629	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2833630	2833825	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2833826	2833954	1	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2833826	2833954	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2833955	2834104	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2834105	2834199	1	-	2	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2834105	2834199	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2834200	2834287	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2834288	2834411	0.99	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2834288	2834411	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2834412	2834533	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2834534	2834675	0.99	-	1	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2834534	2834675	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2834676	2834771	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2834772	2834919	1	-	2	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2834772	2834919	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2834920	2835002	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2835003	2835091	1	-	1	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2835003	2835091	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	intron	2835092	2835163	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	CDS	2835164	2835414	0.98	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	exon	2835164	2835414	.	-	.	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
Ledus.S2	AUGUSTUS	start_codon	2835412	2835414	.	-	0	transcript_id "Ledus.S2G036300.t1"; gene_id "Ledus.S2G036300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10249.t1 is derived from g11279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13808065	13809141	.	+	.	Ledus.S3G172600
Ledus.S3	AUGUSTUS	transcript	13808065	13809141	.	+	.	transcript_id "Ledus.S3G172600.t1"; gene_id "Ledus.S3G172600"
Ledus.S3	AUGUSTUS	start_codon	13808065	13808067	.	+	0	transcript_id "Ledus.S3G172600.t1"; gene_id "Ledus.S3G172600"
Ledus.S3	AUGUSTUS	CDS	13808065	13809141	0.96	+	0	transcript_id "Ledus.S3G172600.t1"; gene_id "Ledus.S3G172600"
Ledus.S3	AUGUSTUS	exon	13808065	13809141	.	+	.	transcript_id "Ledus.S3G172600.t1"; gene_id "Ledus.S3G172600"
Ledus.S3	AUGUSTUS	stop_codon	13809142	13809144	.	+	0	transcript_id "Ledus.S3G172600.t1"; gene_id "Ledus.S3G172600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10052.t1 is derived from g11082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12188171	12190631	.	+	.	Ledus.S3G152900
Ledus.S3	AUGUSTUS	transcript	12188171	12190631	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	start_codon	12188171	12188173	.	+	0	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	CDS	12188171	12188407	0.97	+	0	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	exon	12188171	12188407	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	intron	12188408	12188503	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	CDS	12188504	12188656	1	+	0	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	exon	12188504	12188656	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	intron	12188657	12188752	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	CDS	12188753	12188894	1	+	0	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	exon	12188753	12188894	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	intron	12188895	12188982	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	CDS	12188983	12189100	1	+	2	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	exon	12188983	12189100	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	intron	12189101	12189188	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	CDS	12189189	12189258	1	+	1	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	exon	12189189	12189258	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	intron	12189259	12189352	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	CDS	12189353	12189433	1	+	0	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	exon	12189353	12189433	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	intron	12189434	12189636	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	CDS	12189637	12189693	1	+	0	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	exon	12189637	12189693	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	intron	12189694	12189778	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	CDS	12189779	12189890	1	+	0	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	exon	12189779	12189890	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	intron	12189891	12189975	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	CDS	12189976	12190270	0.99	+	2	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	exon	12189976	12190270	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	intron	12190271	12190540	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	CDS	12190541	12190631	0.98	+	1	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	exon	12190541	12190631	.	+	.	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
Ledus.S3	AUGUSTUS	stop_codon	12190632	12190634	.	+	0	transcript_id "Ledus.S3G152900.t1"; gene_id "Ledus.S3G152900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2063.t1 is derived from g8926.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14406383	14413352	.	-	.	Ledus.S2G194500
Ledus.S2	AUGUSTUS	transcript	14406383	14413352	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	stop_codon	14406380	14406382	.	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14406383	14406646	0.96	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14406383	14406646	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14406647	14406794	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14406795	14406804	1	-	1	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14406795	14406804	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14406805	14406954	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14406955	14407028	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14406955	14407028	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14407029	14407116	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14407117	14407176	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14407117	14407176	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14407177	14407329	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14407330	14407398	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14407330	14407398	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14407399	14407478	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14407479	14407530	1	-	1	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14407479	14407530	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14407531	14407628	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14407629	14407753	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14407629	14407753	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14407754	14407888	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14407889	14407960	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14407889	14407960	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14407961	14408074	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14408075	14408149	0.79	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14408075	14408149	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14408150	14408258	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14408259	14408321	0.99	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14408259	14408321	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14408322	14408410	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14408411	14408512	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14408411	14408512	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14408513	14408624	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14408625	14408732	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14408625	14408732	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14408733	14408957	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14408958	14409041	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14408958	14409041	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14409042	14409175	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14409176	14409286	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14409176	14409286	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14409287	14409465	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14409466	14409537	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14409466	14409537	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14409538	14409692	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14409693	14409767	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14409693	14409767	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14409768	14409885	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14409886	14410011	0.99	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14409886	14410011	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14410012	14410177	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14410178	14410276	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14410178	14410276	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14410277	14410411	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14410412	14410531	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14410412	14410531	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14410532	14410625	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14410626	14410742	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14410626	14410742	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14410743	14410845	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14410846	14410935	0.92	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14410846	14410935	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14410936	14411016	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14411017	14411046	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14411017	14411046	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14411047	14411164	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14411165	14411221	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14411165	14411221	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14411222	14411362	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14411363	14411429	1	-	1	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14411363	14411429	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14411430	14411614	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14411615	14411700	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14411615	14411700	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14411701	14411795	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14411796	14411846	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14411796	14411846	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14411847	14411978	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14411979	14412059	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14411979	14412059	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14412060	14412242	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14412243	14412320	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14412243	14412320	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14412321	14412512	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14412513	14412602	1	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14412513	14412602	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14412603	14412802	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14412803	14412871	0.79	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14412803	14412871	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14412872	14413059	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14413060	14413090	0.79	-	1	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14413060	14413090	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14413091	14413308	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14413309	14413352	0.57	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14413309	14413352	.	-	.	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	start_codon	14413350	14413352	.	-	0	transcript_id "Ledus.S2G194500.t1"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	transcript	14406383	14413352	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	stop_codon	14406380	14406382	.	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14406383	14406646	0.98	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14406383	14406646	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14406647	14406794	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14406795	14406804	1	-	1	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14406795	14406804	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14406805	14406954	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14406955	14407028	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14406955	14407028	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14407029	14407116	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14407117	14407176	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14407117	14407176	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14407177	14407329	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14407330	14407398	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14407330	14407398	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14407399	14407478	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14407479	14407530	1	-	1	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14407479	14407530	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14407531	14407628	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14407629	14407753	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14407629	14407753	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14407754	14407888	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14407889	14407960	0.99	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14407889	14407960	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14407961	14408074	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14408075	14408149	0.74	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14408075	14408149	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14408150	14408258	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14408259	14408324	0.99	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14408259	14408324	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14408325	14408410	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14408411	14408512	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14408411	14408512	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14408513	14408624	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14408625	14408732	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14408625	14408732	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14408733	14408957	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14408958	14409041	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14408958	14409041	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14409042	14409175	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14409176	14409286	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14409176	14409286	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14409287	14409465	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14409466	14409537	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14409466	14409537	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14409538	14409692	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14409693	14409767	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14409693	14409767	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14409768	14409885	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14409886	14410011	0.99	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14409886	14410011	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14410012	14410177	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14410178	14410276	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14410178	14410276	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14410277	14410411	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14410412	14410531	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14410412	14410531	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14410532	14410625	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14410626	14410742	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14410626	14410742	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14410743	14410845	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14410846	14410935	0.92	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14410846	14410935	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14410936	14411016	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14411017	14411046	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14411017	14411046	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14411047	14411164	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14411165	14411221	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14411165	14411221	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14411222	14411362	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14411363	14411429	1	-	1	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14411363	14411429	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14411430	14411614	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14411615	14411700	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14411615	14411700	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14411701	14411795	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14411796	14411846	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14411796	14411846	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14411847	14411978	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14411979	14412059	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14411979	14412059	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14412060	14412242	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14412243	14412320	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14412243	14412320	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14412321	14412512	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14412513	14412602	1	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14412513	14412602	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14412603	14412802	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14412803	14412871	0.72	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14412803	14412871	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14412872	14413059	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14413060	14413090	0.72	-	1	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14413060	14413090	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	intron	14413091	14413308	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	CDS	14413309	14413352	0.55	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	exon	14413309	14413352	.	-	.	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
Ledus.S2	AUGUSTUS	start_codon	14413350	14413352	.	-	0	transcript_id "Ledus.S2G194500.t2"; gene_id "Ledus.S2G194500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2005.t1 is derived from g8868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14140257	14142029	.	-	.	Ledus.S2G188700
Ledus.S2	AUGUSTUS	transcript	14140257	14142029	.	-	.	transcript_id "Ledus.S2G188700.t1"; gene_id "Ledus.S2G188700"
Ledus.S2	AUGUSTUS	stop_codon	14140254	14140256	.	-	0	transcript_id "Ledus.S2G188700.t1"; gene_id "Ledus.S2G188700"
Ledus.S2	AUGUSTUS	CDS	14140257	14142029	0.33	-	0	transcript_id "Ledus.S2G188700.t1"; gene_id "Ledus.S2G188700"
Ledus.S2	AUGUSTUS	exon	14140257	14142029	.	-	.	transcript_id "Ledus.S2G188700.t1"; gene_id "Ledus.S2G188700"
Ledus.S2	AUGUSTUS	start_codon	14142027	14142029	.	-	0	transcript_id "Ledus.S2G188700.t1"; gene_id "Ledus.S2G188700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4048.t1 is derived from g1484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14313583	14313801	.	-	.	Ledus.S1G146900
Ledus.S1	AUGUSTUS	transcript	14313583	14313801	.	-	.	transcript_id "Ledus.S1G146900.t1"; gene_id "Ledus.S1G146900"
Ledus.S1	AUGUSTUS	stop_codon	14313580	14313582	.	-	0	transcript_id "Ledus.S1G146900.t1"; gene_id "Ledus.S1G146900"
Ledus.S1	AUGUSTUS	CDS	14313583	14313801	1	-	0	transcript_id "Ledus.S1G146900.t1"; gene_id "Ledus.S1G146900"
Ledus.S1	AUGUSTUS	exon	14313583	14313801	.	-	.	transcript_id "Ledus.S1G146900.t1"; gene_id "Ledus.S1G146900"
Ledus.S1	AUGUSTUS	start_codon	14313799	14313801	.	-	0	transcript_id "Ledus.S1G146900.t1"; gene_id "Ledus.S1G146900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6125.t1 is derived from g3568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29061257	29062369	.	-	.	Ledus.S1G354600
Ledus.S1	AUGUSTUS	transcript	29061257	29062369	.	-	.	transcript_id "Ledus.S1G354600.t1"; gene_id "Ledus.S1G354600"
Ledus.S1	AUGUSTUS	stop_codon	29061254	29061256	.	-	0	transcript_id "Ledus.S1G354600.t1"; gene_id "Ledus.S1G354600"
Ledus.S1	AUGUSTUS	CDS	29061257	29061880	0.65	-	0	transcript_id "Ledus.S1G354600.t1"; gene_id "Ledus.S1G354600"
Ledus.S1	AUGUSTUS	exon	29061257	29061880	.	-	.	transcript_id "Ledus.S1G354600.t1"; gene_id "Ledus.S1G354600"
Ledus.S1	AUGUSTUS	intron	29061881	29062141	.	-	.	transcript_id "Ledus.S1G354600.t1"; gene_id "Ledus.S1G354600"
Ledus.S1	AUGUSTUS	CDS	29062142	29062369	0.36	-	0	transcript_id "Ledus.S1G354600.t1"; gene_id "Ledus.S1G354600"
Ledus.S1	AUGUSTUS	exon	29062142	29062369	.	-	.	transcript_id "Ledus.S1G354600.t1"; gene_id "Ledus.S1G354600"
Ledus.S1	AUGUSTUS	start_codon	29062367	29062369	.	-	0	transcript_id "Ledus.S1G354600.t1"; gene_id "Ledus.S1G354600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10247.t1 is derived from g11277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13803744	13804031	.	+	.	Ledus.S3G172400
Ledus.S3	AUGUSTUS	transcript	13803744	13804031	.	+	.	transcript_id "Ledus.S3G172400.t1"; gene_id "Ledus.S3G172400"
Ledus.S3	AUGUSTUS	start_codon	13803744	13803746	.	+	0	transcript_id "Ledus.S3G172400.t1"; gene_id "Ledus.S3G172400"
Ledus.S3	AUGUSTUS	CDS	13803744	13804031	0.5	+	0	transcript_id "Ledus.S3G172400.t1"; gene_id "Ledus.S3G172400"
Ledus.S3	AUGUSTUS	exon	13803744	13804031	.	+	.	transcript_id "Ledus.S3G172400.t1"; gene_id "Ledus.S3G172400"
Ledus.S3	AUGUSTUS	stop_codon	13804032	13804034	.	+	0	transcript_id "Ledus.S3G172400.t1"; gene_id "Ledus.S3G172400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10117.t1 is derived from g11148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12894466	12895402	.	+	.	Ledus.S3G159500
Ledus.S3	AUGUSTUS	transcript	12894466	12895402	.	+	.	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	start_codon	12894466	12894468	.	+	0	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	CDS	12894466	12894689	0.94	+	0	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	exon	12894466	12894689	.	+	.	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	intron	12894690	12894775	.	+	.	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	CDS	12894776	12894912	1	+	1	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	exon	12894776	12894912	.	+	.	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	intron	12894913	12894996	.	+	.	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	CDS	12894997	12895133	1	+	2	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	exon	12894997	12895133	.	+	.	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	intron	12895134	12895228	.	+	.	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	CDS	12895229	12895402	0.99	+	0	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	exon	12895229	12895402	.	+	.	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
Ledus.S3	AUGUSTUS	stop_codon	12895403	12895405	.	+	0	transcript_id "Ledus.S3G159500.t1"; gene_id "Ledus.S3G159500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11530.t1 is derived from g5148.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5137211	5140809	.	+	.	Ledus.S4G068600
Ledus.S4	AUGUSTUS	transcript	5137211	5140809	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	start_codon	5137211	5137213	.	+	0	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5137211	5138238	0.5	+	0	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5137211	5138238	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	intron	5138239	5138380	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5138381	5138416	0.84	+	1	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5138381	5138416	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	intron	5138417	5138663	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5138664	5138843	0.47	+	1	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5138664	5138843	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	intron	5138844	5139045	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5139046	5139437	0.14	+	1	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5139046	5139437	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	intron	5139438	5139802	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5139803	5139949	0.21	+	2	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5139803	5139949	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	intron	5139950	5140037	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5140038	5140553	0.29	+	2	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5140038	5140553	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	intron	5140554	5140717	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5140718	5140809	1	+	2	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5140718	5140809	.	+	.	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	stop_codon	5140810	5140812	.	+	0	transcript_id "Ledus.S4G068600.t1"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	transcript	5137211	5140809	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	start_codon	5137211	5137213	.	+	0	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5137211	5138238	0.49	+	0	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5137211	5138238	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	intron	5138239	5138367	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5138368	5138454	0.68	+	1	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5138368	5138454	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	intron	5138455	5138663	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5138664	5138843	0.34	+	1	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5138664	5138843	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	intron	5138844	5139045	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5139046	5139437	0.13	+	1	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5139046	5139437	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	intron	5139438	5139802	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5139803	5139949	0.22	+	2	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5139803	5139949	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	intron	5139950	5140037	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5140038	5140553	0.42	+	2	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5140038	5140553	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	intron	5140554	5140717	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	CDS	5140718	5140809	0.99	+	2	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	exon	5140718	5140809	.	+	.	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
Ledus.S4	AUGUSTUS	stop_codon	5140810	5140812	.	+	0	transcript_id "Ledus.S4G068600.t2"; gene_id "Ledus.S4G068600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2101.t1 is derived from g8964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14719774	14720541	.	+	.	Ledus.S2G198300
Ledus.S2	AUGUSTUS	transcript	14719774	14720541	.	+	.	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	start_codon	14719774	14719776	.	+	0	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	CDS	14719774	14719915	0.97	+	0	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	exon	14719774	14719915	.	+	.	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	intron	14719916	14719996	.	+	.	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	CDS	14719997	14720093	1	+	2	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	exon	14719997	14720093	.	+	.	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	intron	14720094	14720180	.	+	.	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	CDS	14720181	14720259	1	+	1	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	exon	14720181	14720259	.	+	.	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	intron	14720260	14720349	.	+	.	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	CDS	14720350	14720541	1	+	0	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	exon	14720350	14720541	.	+	.	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
Ledus.S2	AUGUSTUS	stop_codon	14720542	14720544	.	+	0	transcript_id "Ledus.S2G198300.t1"; gene_id "Ledus.S2G198300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8049.t1 is derived from g12720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8819360	8819659	.	-	.	Ledus.S5G082700
Ledus.S5	AUGUSTUS	transcript	8819360	8819659	.	-	.	transcript_id "Ledus.S5G082700.t1"; gene_id "Ledus.S5G082700"
Ledus.S5	AUGUSTUS	stop_codon	8819357	8819359	.	-	0	transcript_id "Ledus.S5G082700.t1"; gene_id "Ledus.S5G082700"
Ledus.S5	AUGUSTUS	CDS	8819360	8819659	0.71	-	0	transcript_id "Ledus.S5G082700.t1"; gene_id "Ledus.S5G082700"
Ledus.S5	AUGUSTUS	exon	8819360	8819659	.	-	.	transcript_id "Ledus.S5G082700.t1"; gene_id "Ledus.S5G082700"
Ledus.S5	AUGUSTUS	start_codon	8819657	8819659	.	-	0	transcript_id "Ledus.S5G082700.t1"; gene_id "Ledus.S5G082700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11359.t1 is derived from g4977.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3811752	3814178	.	+	.	Ledus.S4G051500
Ledus.S4	AUGUSTUS	transcript	3811752	3814178	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	start_codon	3811752	3811754	.	+	0	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3811752	3811878	0.96	+	0	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3811752	3811878	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3811879	3812255	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3812256	3812476	1	+	2	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3812256	3812476	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3812477	3812580	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3812581	3812793	1	+	0	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3812581	3812793	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3812794	3812885	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3812886	3813083	1	+	0	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3812886	3813083	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3813084	3813178	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3813179	3813313	1	+	0	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3813179	3813313	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3813314	3813382	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3813383	3813499	1	+	0	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3813383	3813499	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3813500	3813590	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3813591	3813708	1	+	0	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3813591	3813708	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3813709	3814077	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3814078	3814178	1	+	2	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3814078	3814178	.	+	.	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	stop_codon	3814179	3814181	.	+	0	transcript_id "Ledus.S4G051500.t1"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	transcript	3811752	3814178	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	start_codon	3811752	3811754	.	+	0	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3811752	3812064	0.93	+	0	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3811752	3812064	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3812065	3812255	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3812256	3812476	0.99	+	2	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3812256	3812476	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3812477	3812580	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3812581	3812793	1	+	0	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3812581	3812793	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3812794	3812885	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3812886	3813083	1	+	0	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3812886	3813083	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3813084	3813178	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3813179	3813313	1	+	0	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3813179	3813313	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3813314	3813382	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3813383	3813499	1	+	0	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3813383	3813499	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3813500	3813590	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3813591	3813708	1	+	0	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3813591	3813708	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	intron	3813709	3814077	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	CDS	3814078	3814178	1	+	2	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	exon	3814078	3814178	.	+	.	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
Ledus.S4	AUGUSTUS	stop_codon	3814179	3814181	.	+	0	transcript_id "Ledus.S4G051500.t2"; gene_id "Ledus.S4G051500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1629.t1 is derived from g8490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11480679	11482752	.	+	.	Ledus.S2G151100
Ledus.S2	AUGUSTUS	transcript	11480679	11482752	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	start_codon	11480679	11480681	.	+	0	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	CDS	11480679	11481383	0.99	+	0	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	exon	11480679	11481383	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	intron	11481384	11481469	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	CDS	11481470	11481619	0.87	+	0	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	exon	11481470	11481619	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	intron	11481620	11481731	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	CDS	11481732	11481893	0.97	+	0	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	exon	11481732	11481893	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	intron	11481894	11481974	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	CDS	11481975	11482160	1	+	0	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	exon	11481975	11482160	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	intron	11482161	11482258	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	CDS	11482259	11482381	1	+	0	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	exon	11482259	11482381	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	intron	11482382	11482462	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	CDS	11482463	11482552	1	+	0	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	exon	11482463	11482552	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	intron	11482553	11482674	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	CDS	11482675	11482752	1	+	0	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	exon	11482675	11482752	.	+	.	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
Ledus.S2	AUGUSTUS	stop_codon	11482753	11482755	.	+	0	transcript_id "Ledus.S2G151100.t1"; gene_id "Ledus.S2G151100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10230.t1 is derived from g11260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13697944	13698655	.	-	.	Ledus.S3G170700
Ledus.S3	AUGUSTUS	transcript	13697944	13698655	.	-	.	transcript_id "Ledus.S3G170700.t1"; gene_id "Ledus.S3G170700"
Ledus.S3	AUGUSTUS	stop_codon	13697941	13697943	.	-	0	transcript_id "Ledus.S3G170700.t1"; gene_id "Ledus.S3G170700"
Ledus.S3	AUGUSTUS	CDS	13697944	13698068	0.33	-	2	transcript_id "Ledus.S3G170700.t1"; gene_id "Ledus.S3G170700"
Ledus.S3	AUGUSTUS	exon	13697944	13698068	.	-	.	transcript_id "Ledus.S3G170700.t1"; gene_id "Ledus.S3G170700"
Ledus.S3	AUGUSTUS	intron	13698069	13698366	.	-	.	transcript_id "Ledus.S3G170700.t1"; gene_id "Ledus.S3G170700"
Ledus.S3	AUGUSTUS	CDS	13698367	13698655	0.4	-	0	transcript_id "Ledus.S3G170700.t1"; gene_id "Ledus.S3G170700"
Ledus.S3	AUGUSTUS	exon	13698367	13698655	.	-	.	transcript_id "Ledus.S3G170700.t1"; gene_id "Ledus.S3G170700"
Ledus.S3	AUGUSTUS	start_codon	13698653	13698655	.	-	0	transcript_id "Ledus.S3G170700.t1"; gene_id "Ledus.S3G170700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6124.t1 is derived from g3567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29059160	29061079	.	+	.	Ledus.S1G354500
Ledus.S1	AUGUSTUS	transcript	29059160	29061079	.	+	.	transcript_id "Ledus.S1G354500.t1"; gene_id "Ledus.S1G354500"
Ledus.S1	AUGUSTUS	start_codon	29059160	29059162	.	+	0	transcript_id "Ledus.S1G354500.t1"; gene_id "Ledus.S1G354500"
Ledus.S1	AUGUSTUS	CDS	29059160	29061079	0.46	+	0	transcript_id "Ledus.S1G354500.t1"; gene_id "Ledus.S1G354500"
Ledus.S1	AUGUSTUS	exon	29059160	29061079	.	+	.	transcript_id "Ledus.S1G354500.t1"; gene_id "Ledus.S1G354500"
Ledus.S1	AUGUSTUS	stop_codon	29061080	29061082	.	+	0	transcript_id "Ledus.S1G354500.t1"; gene_id "Ledus.S1G354500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5529.t1 is derived from g2968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24955463	24956427	.	+	.	Ledus.S1G295000
Ledus.S1	AUGUSTUS	transcript	24955463	24956427	.	+	.	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	start_codon	24955463	24955465	.	+	0	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	CDS	24955463	24955539	0.91	+	0	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	exon	24955463	24955539	.	+	.	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	intron	24955540	24955645	.	+	.	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	CDS	24955646	24955734	0.99	+	1	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	exon	24955646	24955734	.	+	.	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	intron	24955735	24955810	.	+	.	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	CDS	24955811	24955875	0.79	+	2	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	exon	24955811	24955875	.	+	.	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	intron	24955876	24955977	.	+	.	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	CDS	24955978	24956050	1	+	0	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	exon	24955978	24956050	.	+	.	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	intron	24956051	24956142	.	+	.	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	CDS	24956143	24956188	1	+	2	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	exon	24956143	24956188	.	+	.	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	intron	24956189	24956279	.	+	.	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	CDS	24956280	24956427	1	+	1	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	exon	24956280	24956427	.	+	.	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
Ledus.S1	AUGUSTUS	stop_codon	24956428	24956430	.	+	0	transcript_id "Ledus.S1G295000.t1"; gene_id "Ledus.S1G295000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5440.t1 is derived from g2879.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24217934	24220292	.	-	.	Ledus.S1G286100
Ledus.S1	AUGUSTUS	transcript	24217934	24220292	.	-	.	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	stop_codon	24217931	24217933	.	-	0	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	CDS	24217934	24217950	0.43	-	2	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	exon	24217934	24217950	.	-	.	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	intron	24217951	24218042	.	-	.	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	CDS	24218043	24218120	0.5	-	2	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	exon	24218043	24218120	.	-	.	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	intron	24218121	24218207	.	-	.	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	CDS	24218208	24218231	0.53	-	2	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	exon	24218208	24218231	.	-	.	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	intron	24218232	24218335	.	-	.	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	CDS	24218336	24220292	0.15	-	0	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	exon	24218336	24220292	.	-	.	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
Ledus.S1	AUGUSTUS	start_codon	24220290	24220292	.	-	0	transcript_id "Ledus.S1G286100.t1"; gene_id "Ledus.S1G286100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2460.t1 is derived from g9323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18267609	18268676	.	-	.	Ledus.S2G234200
Ledus.S2	AUGUSTUS	transcript	18267609	18268676	.	-	.	transcript_id "Ledus.S2G234200.t1"; gene_id "Ledus.S2G234200"
Ledus.S2	AUGUSTUS	stop_codon	18267606	18267608	.	-	0	transcript_id "Ledus.S2G234200.t1"; gene_id "Ledus.S2G234200"
Ledus.S2	AUGUSTUS	CDS	18267609	18267865	1	-	2	transcript_id "Ledus.S2G234200.t1"; gene_id "Ledus.S2G234200"
Ledus.S2	AUGUSTUS	exon	18267609	18267865	.	-	.	transcript_id "Ledus.S2G234200.t1"; gene_id "Ledus.S2G234200"
Ledus.S2	AUGUSTUS	intron	18267866	18267952	.	-	.	transcript_id "Ledus.S2G234200.t1"; gene_id "Ledus.S2G234200"
Ledus.S2	AUGUSTUS	CDS	18267953	18268676	0.95	-	0	transcript_id "Ledus.S2G234200.t1"; gene_id "Ledus.S2G234200"
Ledus.S2	AUGUSTUS	exon	18267953	18268676	.	-	.	transcript_id "Ledus.S2G234200.t1"; gene_id "Ledus.S2G234200"
Ledus.S2	AUGUSTUS	start_codon	18268674	18268676	.	-	0	transcript_id "Ledus.S2G234200.t1"; gene_id "Ledus.S2G234200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8738.t1 is derived from g9768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1701002	1701442	.	-	.	Ledus.S3G021500
Ledus.S3	AUGUSTUS	transcript	1701002	1701442	.	-	.	transcript_id "Ledus.S3G021500.t1"; gene_id "Ledus.S3G021500"
Ledus.S3	AUGUSTUS	stop_codon	1700999	1701001	.	-	0	transcript_id "Ledus.S3G021500.t1"; gene_id "Ledus.S3G021500"
Ledus.S3	AUGUSTUS	CDS	1701002	1701442	0.57	-	0	transcript_id "Ledus.S3G021500.t1"; gene_id "Ledus.S3G021500"
Ledus.S3	AUGUSTUS	exon	1701002	1701442	.	-	.	transcript_id "Ledus.S3G021500.t1"; gene_id "Ledus.S3G021500"
Ledus.S3	AUGUSTUS	start_codon	1701440	1701442	.	-	0	transcript_id "Ledus.S3G021500.t1"; gene_id "Ledus.S3G021500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8944.t1 is derived from g9974.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3354402	3354602	.	-	.	Ledus.S3G042100
Ledus.S3	AUGUSTUS	transcript	3354402	3354602	.	-	.	transcript_id "Ledus.S3G042100.t1"; gene_id "Ledus.S3G042100"
Ledus.S3	AUGUSTUS	stop_codon	3354399	3354401	.	-	0	transcript_id "Ledus.S3G042100.t1"; gene_id "Ledus.S3G042100"
Ledus.S3	AUGUSTUS	CDS	3354402	3354602	0.99	-	0	transcript_id "Ledus.S3G042100.t1"; gene_id "Ledus.S3G042100"
Ledus.S3	AUGUSTUS	exon	3354402	3354602	.	-	.	transcript_id "Ledus.S3G042100.t1"; gene_id "Ledus.S3G042100"
Ledus.S3	AUGUSTUS	start_codon	3354600	3354602	.	-	0	transcript_id "Ledus.S3G042100.t1"; gene_id "Ledus.S3G042100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2178.t1 is derived from g9041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15771293	15773881	.	-	.	Ledus.S2G206000
Ledus.S2	AUGUSTUS	transcript	15771293	15773881	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	stop_codon	15771290	15771292	.	-	0	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	CDS	15771293	15771404	0.84	-	1	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	exon	15771293	15771404	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	intron	15771405	15771489	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	CDS	15771490	15771507	0.87	-	1	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	exon	15771490	15771507	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	intron	15771508	15771833	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	CDS	15771834	15771863	1	-	1	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	exon	15771834	15771863	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	intron	15771864	15772004	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	CDS	15772005	15772078	1	-	0	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	exon	15772005	15772078	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	intron	15772079	15772225	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	CDS	15772226	15772327	0.98	-	0	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	exon	15772226	15772327	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	intron	15772328	15772412	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	CDS	15772413	15772450	0.95	-	2	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	exon	15772413	15772450	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	intron	15772451	15773063	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	CDS	15773064	15773131	0.5	-	1	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	exon	15773064	15773131	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	intron	15773132	15773217	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	CDS	15773218	15773327	0.94	-	0	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	exon	15773218	15773327	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	intron	15773328	15773489	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	CDS	15773490	15773685	0.35	-	1	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	exon	15773490	15773685	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	intron	15773686	15773801	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	CDS	15773802	15773881	0.12	-	0	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	exon	15773802	15773881	.	-	.	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
Ledus.S2	AUGUSTUS	start_codon	15773879	15773881	.	-	0	transcript_id "Ledus.S2G206000.t1"; gene_id "Ledus.S2G206000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg618.t1 is derived from g7479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3693360	3695553	.	-	.	Ledus.S2G050000
Ledus.S2	AUGUSTUS	transcript	3693360	3695553	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	stop_codon	3693357	3693359	.	-	0	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	CDS	3693360	3693567	0.55	-	1	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	exon	3693360	3693567	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	intron	3693568	3693664	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	CDS	3693665	3693891	0.41	-	0	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	exon	3693665	3693891	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	intron	3693892	3694000	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	CDS	3694001	3694239	1	-	2	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	exon	3694001	3694239	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	intron	3694240	3694327	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	CDS	3694328	3694409	0.99	-	0	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	exon	3694328	3694409	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	intron	3694410	3694521	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	CDS	3694522	3694748	0.98	-	2	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	exon	3694522	3694748	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	intron	3694749	3694880	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	CDS	3694881	3694986	0.94	-	0	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	exon	3694881	3694986	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	intron	3694987	3695114	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	CDS	3695115	3695214	0.59	-	1	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	exon	3695115	3695214	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	intron	3695215	3695293	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	CDS	3695294	3695553	1	-	0	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	exon	3695294	3695553	.	-	.	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
Ledus.S2	AUGUSTUS	start_codon	3695551	3695553	.	-	0	transcript_id "Ledus.S2G050000.t1"; gene_id "Ledus.S2G050000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11677.t1 is derived from g5296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5933922	5935342	.	-	.	Ledus.S4G083300
Ledus.S4	AUGUSTUS	transcript	5933922	5935342	.	-	.	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	stop_codon	5933919	5933921	.	-	0	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	CDS	5933922	5934001	0.37	-	2	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	exon	5933922	5934001	.	-	.	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	intron	5934002	5934175	.	-	.	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	CDS	5934176	5934226	1	-	2	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	exon	5934176	5934226	.	-	.	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	intron	5934227	5934301	.	-	.	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	CDS	5934302	5934436	1	-	2	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	exon	5934302	5934436	.	-	.	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	intron	5934437	5934570	.	-	.	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	CDS	5934571	5934865	0.81	-	0	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	exon	5934571	5934865	.	-	.	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	intron	5934866	5935288	.	-	.	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	CDS	5935289	5935342	1	-	0	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	exon	5935289	5935342	.	-	.	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	start_codon	5935340	5935342	.	-	0	transcript_id "Ledus.S4G083300.t1"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	transcript	5933922	5935342	.	-	.	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	stop_codon	5933919	5933921	.	-	0	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	CDS	5933922	5934001	0.31	-	2	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	exon	5933922	5934001	.	-	.	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	intron	5934002	5934175	.	-	.	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	CDS	5934176	5934226	1	-	2	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	exon	5934176	5934226	.	-	.	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	intron	5934227	5934301	.	-	.	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	CDS	5934302	5934436	1	-	2	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	exon	5934302	5934436	.	-	.	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	intron	5934437	5934570	.	-	.	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	CDS	5934571	5934713	0.27	-	1	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	exon	5934571	5934713	.	-	.	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	intron	5934714	5935080	.	-	.	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	CDS	5935081	5935088	0.28	-	0	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	exon	5935081	5935088	.	-	.	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	intron	5935089	5935288	.	-	.	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	CDS	5935289	5935342	0.58	-	0	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	exon	5935289	5935342	.	-	.	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
Ledus.S4	AUGUSTUS	start_codon	5935340	5935342	.	-	0	transcript_id "Ledus.S4G083300.t2"; gene_id "Ledus.S4G083300"
# This transcript jg10643.t2 is derived from g11673.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10644.t1 is derived from g11674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16834517	16851285	.	+	.	Ledus.S3G212100
Ledus.S3	AUGUSTUS	transcript	16834517	16851285	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	start_codon	16834517	16834519	.	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16834517	16834574	1	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16834517	16834574	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16834575	16834668	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16834669	16835045	0.97	+	2	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16834669	16835045	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16835046	16835200	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16835201	16835548	0.86	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16835201	16835548	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16835549	16835699	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16835700	16835822	0.85	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16835700	16835822	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16835823	16836100	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16836101	16836186	1	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16836101	16836186	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16836187	16836385	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16836386	16836494	1	+	1	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16836386	16836494	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16836495	16836707	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16836708	16836803	1	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16836708	16836803	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16836804	16837044	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16837045	16837107	1	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16837045	16837107	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16837108	16837212	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16837213	16837272	0.98	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16837213	16837272	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16837273	16837381	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16837382	16837456	0.86	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16837382	16837456	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16837457	16837584	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16837585	16837666	1	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16837585	16837666	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16837667	16837856	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16837857	16838026	1	+	2	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16837857	16838026	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16838027	16838199	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16838200	16839432	0.96	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16838200	16839432	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16839433	16839515	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16839516	16840508	0.92	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16839516	16840508	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16840509	16840597	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16840598	16840933	1	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16840598	16840933	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16840934	16841053	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16841054	16841312	0.96	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16841054	16841312	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16841313	16841449	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16841450	16841672	1	+	2	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16841450	16841672	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16841673	16841961	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16841962	16842358	1	+	1	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16841962	16842358	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16842359	16842449	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16842450	16842599	1	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16842450	16842599	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16842600	16842756	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16842757	16842978	1	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16842757	16842978	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16842979	16843146	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16843147	16843368	1	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16843147	16843368	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16843369	16843458	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16843459	16844139	0.68	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16843459	16844139	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16844140	16844305	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16844306	16844566	1	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16844306	16844566	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16844567	16844691	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16844692	16845054	0.99	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16844692	16845054	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16845055	16845139	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16845140	16845549	0.96	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16845140	16845549	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16845550	16845639	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16845640	16845676	0.81	+	1	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16845640	16845676	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16845677	16845844	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16845845	16846069	0.81	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16845845	16846069	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16846070	16846195	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16846196	16847542	0.99	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16846196	16847542	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16847543	16847632	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16847633	16847893	0.99	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16847633	16847893	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16847894	16848036	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16848037	16848327	0.9	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16848037	16848327	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16848328	16848456	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16848457	16848957	1	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16848457	16848957	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16848958	16849121	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16849122	16849553	0.97	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16849122	16849553	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16849554	16849660	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16849661	16849939	0.98	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16849661	16849939	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16849940	16850090	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16850091	16850493	0.99	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16850091	16850493	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16850494	16850591	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16850592	16850740	1	+	2	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16850592	16850740	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16850741	16850822	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16850823	16851020	1	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16850823	16851020	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	intron	16851021	16851165	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	CDS	16851166	16851285	0.99	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	exon	16851166	16851285	.	+	.	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
Ledus.S3	AUGUSTUS	stop_codon	16851286	16851288	.	+	0	transcript_id "Ledus.S3G212100.t1"; gene_id "Ledus.S3G212100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3960.t1 is derived from g1396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13770284	13772121	.	-	.	Ledus.S1G138100
Ledus.S1	AUGUSTUS	transcript	13770284	13772121	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	stop_codon	13770281	13770283	.	-	0	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	CDS	13770284	13770556	1	-	0	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	exon	13770284	13770556	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	intron	13770557	13770693	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	CDS	13770694	13770789	1	-	0	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	exon	13770694	13770789	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	intron	13770790	13770893	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	CDS	13770894	13771004	1	-	0	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	exon	13770894	13771004	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	intron	13771005	13771103	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	CDS	13771104	13771178	1	-	0	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	exon	13771104	13771178	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	intron	13771179	13771269	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	CDS	13771270	13771358	1	-	2	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	exon	13771270	13771358	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	intron	13771359	13771449	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	CDS	13771450	13771589	0.99	-	1	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	exon	13771450	13771589	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	intron	13771590	13771678	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	CDS	13771679	13772121	0.46	-	0	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	exon	13771679	13772121	.	-	.	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
Ledus.S1	AUGUSTUS	start_codon	13772119	13772121	.	-	0	transcript_id "Ledus.S1G138100.t1"; gene_id "Ledus.S1G138100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3956.t1 is derived from g1392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13755320	13756927	.	-	.	Ledus.S1G137700
Ledus.S1	AUGUSTUS	transcript	13755320	13756927	.	-	.	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	stop_codon	13755317	13755319	.	-	0	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	CDS	13755320	13755538	0.46	-	0	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	exon	13755320	13755538	.	-	.	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	intron	13755539	13755641	.	-	.	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	CDS	13755642	13755672	0.73	-	1	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	exon	13755642	13755672	.	-	.	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	intron	13755673	13755821	.	-	.	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	CDS	13755822	13755881	0.87	-	1	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	exon	13755822	13755881	.	-	.	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	intron	13755882	13756754	.	-	.	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	CDS	13756755	13756927	0.38	-	0	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	exon	13756755	13756927	.	-	.	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
Ledus.S1	AUGUSTUS	start_codon	13756925	13756927	.	-	0	transcript_id "Ledus.S1G137700.t1"; gene_id "Ledus.S1G137700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2822.t1 is derived from g256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3950273	3950626	.	+	.	Ledus.S1G024300
Ledus.S1	AUGUSTUS	transcript	3950273	3950626	.	+	.	transcript_id "Ledus.S1G024300.t1"; gene_id "Ledus.S1G024300"
Ledus.S1	AUGUSTUS	start_codon	3950273	3950275	.	+	0	transcript_id "Ledus.S1G024300.t1"; gene_id "Ledus.S1G024300"
Ledus.S1	AUGUSTUS	CDS	3950273	3950626	0.97	+	0	transcript_id "Ledus.S1G024300.t1"; gene_id "Ledus.S1G024300"
Ledus.S1	AUGUSTUS	exon	3950273	3950626	.	+	.	transcript_id "Ledus.S1G024300.t1"; gene_id "Ledus.S1G024300"
Ledus.S1	AUGUSTUS	stop_codon	3950627	3950629	.	+	0	transcript_id "Ledus.S1G024300.t1"; gene_id "Ledus.S1G024300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4026.t1 is derived from g1462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14246990	14247283	.	+	.	Ledus.S1G144700
Ledus.S1	AUGUSTUS	transcript	14246990	14247283	.	+	.	transcript_id "Ledus.S1G144700.t1"; gene_id "Ledus.S1G144700"
Ledus.S1	AUGUSTUS	start_codon	14246990	14246992	.	+	0	transcript_id "Ledus.S1G144700.t1"; gene_id "Ledus.S1G144700"
Ledus.S1	AUGUSTUS	CDS	14246990	14247283	0.82	+	0	transcript_id "Ledus.S1G144700.t1"; gene_id "Ledus.S1G144700"
Ledus.S1	AUGUSTUS	exon	14246990	14247283	.	+	.	transcript_id "Ledus.S1G144700.t1"; gene_id "Ledus.S1G144700"
Ledus.S1	AUGUSTUS	stop_codon	14247284	14247286	.	+	0	transcript_id "Ledus.S1G144700.t1"; gene_id "Ledus.S1G144700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11813.t1 is derived from g5432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6925549	6926158	.	-	.	Ledus.S4G096900
Ledus.S4	AUGUSTUS	transcript	6925549	6926158	.	-	.	transcript_id "Ledus.S4G096900.t1"; gene_id "Ledus.S4G096900"
Ledus.S4	AUGUSTUS	stop_codon	6925546	6925548	.	-	0	transcript_id "Ledus.S4G096900.t1"; gene_id "Ledus.S4G096900"
Ledus.S4	AUGUSTUS	CDS	6925549	6925612	0.65	-	1	transcript_id "Ledus.S4G096900.t1"; gene_id "Ledus.S4G096900"
Ledus.S4	AUGUSTUS	exon	6925549	6925612	.	-	.	transcript_id "Ledus.S4G096900.t1"; gene_id "Ledus.S4G096900"
Ledus.S4	AUGUSTUS	intron	6925613	6925931	.	-	.	transcript_id "Ledus.S4G096900.t1"; gene_id "Ledus.S4G096900"
Ledus.S4	AUGUSTUS	CDS	6925932	6926158	0.51	-	0	transcript_id "Ledus.S4G096900.t1"; gene_id "Ledus.S4G096900"
Ledus.S4	AUGUSTUS	exon	6925932	6926158	.	-	.	transcript_id "Ledus.S4G096900.t1"; gene_id "Ledus.S4G096900"
Ledus.S4	AUGUSTUS	start_codon	6926156	6926158	.	-	0	transcript_id "Ledus.S4G096900.t1"; gene_id "Ledus.S4G096900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12532.t1 is derived from g6153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12751948	12752913	.	-	.	Ledus.S4G168800
Ledus.S4	AUGUSTUS	transcript	12751948	12752913	.	-	.	transcript_id "Ledus.S4G168800.t1"; gene_id "Ledus.S4G168800"
Ledus.S4	AUGUSTUS	stop_codon	12751945	12751947	.	-	0	transcript_id "Ledus.S4G168800.t1"; gene_id "Ledus.S4G168800"
Ledus.S4	AUGUSTUS	CDS	12751948	12752913	0.99	-	0	transcript_id "Ledus.S4G168800.t1"; gene_id "Ledus.S4G168800"
Ledus.S4	AUGUSTUS	exon	12751948	12752913	.	-	.	transcript_id "Ledus.S4G168800.t1"; gene_id "Ledus.S4G168800"
Ledus.S4	AUGUSTUS	start_codon	12752911	12752913	.	-	0	transcript_id "Ledus.S4G168800.t1"; gene_id "Ledus.S4G168800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7689.t1 is derived from g12360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5199083	5203612	.	+	.	Ledus.S5G046700
Ledus.S5	AUGUSTUS	transcript	5199083	5203612	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	start_codon	5199083	5199085	.	+	0	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	CDS	5199083	5199271	0.93	+	0	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	exon	5199083	5199271	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	intron	5199272	5199406	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	CDS	5199407	5200063	1	+	0	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	exon	5199407	5200063	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	intron	5200064	5200149	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	CDS	5200150	5201340	0.86	+	0	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	exon	5200150	5201340	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	intron	5201341	5201582	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	CDS	5201583	5201916	1	+	0	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	exon	5201583	5201916	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	intron	5201917	5202075	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	CDS	5202076	5202328	1	+	2	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	exon	5202076	5202328	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	intron	5202329	5202482	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	CDS	5202483	5202915	0.99	+	1	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	exon	5202483	5202915	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	intron	5202916	5202989	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	CDS	5202990	5203327	1	+	0	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	exon	5202990	5203327	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	intron	5203328	5203494	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	CDS	5203495	5203612	0.91	+	1	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	exon	5203495	5203612	.	+	.	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
Ledus.S5	AUGUSTUS	stop_codon	5203613	5203615	.	+	0	transcript_id "Ledus.S5G046700.t1"; gene_id "Ledus.S5G046700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7257.t1 is derived from g11928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	510834	515013	.	-	.	Ledus.S5G003500
Ledus.S5	AUGUSTUS	transcript	510834	515013	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	stop_codon	510831	510833	.	-	0	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	510834	510905	0.93	-	0	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	510834	510905	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	510906	511015	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	511016	511085	0.86	-	1	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	511016	511085	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	511086	511191	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	511192	511295	0.92	-	0	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	511192	511295	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	511296	511391	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	511392	511565	1	-	0	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	511392	511565	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	511566	511743	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	511744	511853	1	-	2	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	511744	511853	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	511854	512110	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	512111	512263	1	-	2	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	512111	512263	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	512264	512450	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	512451	512535	1	-	0	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	512451	512535	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	512536	512642	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	512643	512734	0.72	-	2	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	512643	512734	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	512735	512878	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	512879	512935	1	-	2	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	512879	512935	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	512936	513062	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	513063	513170	1	-	2	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	513063	513170	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	513171	513356	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	513357	513412	1	-	1	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	513357	513412	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	513413	513545	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	513546	513642	1	-	2	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	513546	513642	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	513643	514002	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	514003	514031	1	-	1	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	514003	514031	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	514032	514335	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	514336	514471	1	-	2	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	514336	514471	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	514472	514763	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	514764	514861	1	-	1	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	514764	514861	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	intron	514862	514954	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	CDS	514955	515013	1	-	0	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	exon	514955	515013	.	-	.	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
Ledus.S5	AUGUSTUS	start_codon	515011	515013	.	-	0	transcript_id "Ledus.S5G003500.t1"; gene_id "Ledus.S5G003500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7122.t1 is derived from g6653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1679680	1681125	.	-	.	Ledus.C7G018300
Ledus.C7	AUGUSTUS	transcript	1679680	1681125	.	-	.	transcript_id "Ledus.C7G018300.t1"; gene_id "Ledus.C7G018300"
Ledus.C7	AUGUSTUS	stop_codon	1679677	1679679	.	-	0	transcript_id "Ledus.C7G018300.t1"; gene_id "Ledus.C7G018300"
Ledus.C7	AUGUSTUS	CDS	1679680	1681125	0.5	-	0	transcript_id "Ledus.C7G018300.t1"; gene_id "Ledus.C7G018300"
Ledus.C7	AUGUSTUS	exon	1679680	1681125	.	-	.	transcript_id "Ledus.C7G018300.t1"; gene_id "Ledus.C7G018300"
Ledus.C7	AUGUSTUS	start_codon	1681123	1681125	.	-	0	transcript_id "Ledus.C7G018300.t1"; gene_id "Ledus.C7G018300"
# This transcript jg4961.t2 is derived from g2399.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4961.t3 is derived from g2399.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4962.t1 is derived from g2400.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20896883	20898617	.	+	.	Ledus.S1G238300
Ledus.S1	AUGUSTUS	transcript	20896883	20898617	.	+	.	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	start_codon	20896883	20896885	.	+	0	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	CDS	20896883	20897256	0.68	+	0	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	exon	20896883	20897256	.	+	.	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	intron	20897257	20897348	.	+	.	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	CDS	20897349	20898037	1	+	1	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	exon	20897349	20898037	.	+	.	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	intron	20898038	20898153	.	+	.	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	CDS	20898154	20898457	1	+	2	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	exon	20898154	20898457	.	+	.	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	intron	20898458	20898556	.	+	.	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	CDS	20898557	20898617	1	+	1	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	exon	20898557	20898617	.	+	.	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	stop_codon	20898618	20898620	.	+	0	transcript_id "Ledus.S1G238300.t1"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	transcript	20896883	20898617	.	+	.	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	start_codon	20896883	20896885	.	+	0	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	CDS	20896883	20897256	0.65	+	0	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	exon	20896883	20897256	.	+	.	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	intron	20897257	20897357	.	+	.	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	CDS	20897358	20898037	0.59	+	1	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	exon	20897358	20898037	.	+	.	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	intron	20898038	20898153	.	+	.	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	CDS	20898154	20898457	1	+	2	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	exon	20898154	20898457	.	+	.	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	intron	20898458	20898556	.	+	.	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	CDS	20898557	20898617	0.99	+	1	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	exon	20898557	20898617	.	+	.	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
Ledus.S1	AUGUSTUS	stop_codon	20898618	20898620	.	+	0	transcript_id "Ledus.S1G238300.t2"; gene_id "Ledus.S1G238300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3028.t1 is derived from g463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5386471	5387939	.	-	.	Ledus.S1G044900
Ledus.S1	AUGUSTUS	transcript	5386471	5387939	.	-	.	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	stop_codon	5386468	5386470	.	-	0	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	CDS	5386471	5386501	0.48	-	1	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	exon	5386471	5386501	.	-	.	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	intron	5386502	5386613	.	-	.	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	CDS	5386614	5386729	0.47	-	0	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	exon	5386614	5386729	.	-	.	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	intron	5386730	5386810	.	-	.	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	CDS	5386811	5387118	1	-	2	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	exon	5386811	5387118	.	-	.	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	intron	5387119	5387183	.	-	.	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	CDS	5387184	5387455	0.54	-	1	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	exon	5387184	5387455	.	-	.	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	intron	5387456	5387901	.	-	.	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	CDS	5387902	5387939	0.34	-	0	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	exon	5387902	5387939	.	-	.	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
Ledus.S1	AUGUSTUS	start_codon	5387937	5387939	.	-	0	transcript_id "Ledus.S1G044900.t1"; gene_id "Ledus.S1G044900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6638.t1 is derived from g4081.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32813007	32813669	.	+	.	Ledus.S1G405900
Ledus.S1	AUGUSTUS	transcript	32813007	32813669	.	+	.	transcript_id "Ledus.S1G405900.t1"; gene_id "Ledus.S1G405900"
Ledus.S1	AUGUSTUS	start_codon	32813007	32813009	.	+	0	transcript_id "Ledus.S1G405900.t1"; gene_id "Ledus.S1G405900"
Ledus.S1	AUGUSTUS	CDS	32813007	32813669	0.44	+	0	transcript_id "Ledus.S1G405900.t1"; gene_id "Ledus.S1G405900"
Ledus.S1	AUGUSTUS	exon	32813007	32813669	.	+	.	transcript_id "Ledus.S1G405900.t1"; gene_id "Ledus.S1G405900"
Ledus.S1	AUGUSTUS	stop_codon	32813670	32813672	.	+	0	transcript_id "Ledus.S1G405900.t1"; gene_id "Ledus.S1G405900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg426.t1 is derived from g7287.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2398413	2400206	.	-	.	Ledus.S2G030800
Ledus.S2	AUGUSTUS	transcript	2398931	2400206	.	-	.	transcript_id "Ledus.S2G030800.t1"; gene_id "Ledus.S2G030800"
Ledus.S2	AUGUSTUS	stop_codon	2398928	2398930	.	-	0	transcript_id "Ledus.S2G030800.t1"; gene_id "Ledus.S2G030800"
Ledus.S2	AUGUSTUS	CDS	2398931	2398951	0.65	-	0	transcript_id "Ledus.S2G030800.t1"; gene_id "Ledus.S2G030800"
Ledus.S2	AUGUSTUS	exon	2398931	2398951	.	-	.	transcript_id "Ledus.S2G030800.t1"; gene_id "Ledus.S2G030800"
Ledus.S2	AUGUSTUS	intron	2398952	2399051	.	-	.	transcript_id "Ledus.S2G030800.t1"; gene_id "Ledus.S2G030800"
Ledus.S2	AUGUSTUS	CDS	2399052	2400206	0.61	-	0	transcript_id "Ledus.S2G030800.t1"; gene_id "Ledus.S2G030800"
Ledus.S2	AUGUSTUS	exon	2399052	2400206	.	-	.	transcript_id "Ledus.S2G030800.t1"; gene_id "Ledus.S2G030800"
Ledus.S2	AUGUSTUS	start_codon	2400204	2400206	.	-	0	transcript_id "Ledus.S2G030800.t1"; gene_id "Ledus.S2G030800"
Ledus.S2	AUGUSTUS	transcript	2398413	2400206	.	-	.	transcript_id "Ledus.S2G030800.t2"; gene_id "Ledus.S2G030800"
Ledus.S2	AUGUSTUS	stop_codon	2398410	2398412	.	-	0	transcript_id "Ledus.S2G030800.t2"; gene_id "Ledus.S2G030800"
Ledus.S2	AUGUSTUS	CDS	2398413	2400206	0.7	-	0	transcript_id "Ledus.S2G030800.t2"; gene_id "Ledus.S2G030800"
Ledus.S2	AUGUSTUS	exon	2398413	2400206	.	-	.	transcript_id "Ledus.S2G030800.t2"; gene_id "Ledus.S2G030800"
Ledus.S2	AUGUSTUS	start_codon	2400204	2400206	.	-	0	transcript_id "Ledus.S2G030800.t2"; gene_id "Ledus.S2G030800"
# This transcript jg10790.t2 is derived from g11822.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10791.t1 is derived from g11823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17767162	17768001	.	-	.	Ledus.S3G226800
Ledus.S3	AUGUSTUS	transcript	17767162	17768001	.	-	.	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	stop_codon	17767159	17767161	.	-	0	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	CDS	17767162	17767332	1	-	0	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	exon	17767162	17767332	.	-	.	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	intron	17767333	17767423	.	-	.	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	CDS	17767424	17767526	1	-	1	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	exon	17767424	17767526	.	-	.	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	intron	17767527	17767684	.	-	.	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	CDS	17767685	17767804	0.86	-	1	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	exon	17767685	17767804	.	-	.	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	intron	17767805	17767906	.	-	.	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	CDS	17767907	17768001	0.93	-	0	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	exon	17767907	17768001	.	-	.	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
Ledus.S3	AUGUSTUS	start_codon	17767999	17768001	.	-	0	transcript_id "Ledus.S3G226800.t1"; gene_id "Ledus.S3G226800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6394.t1 is derived from g3837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30986961	30987695	.	-	.	Ledus.S1G381500
Ledus.S1	AUGUSTUS	transcript	30986961	30987695	.	-	.	transcript_id "Ledus.S1G381500.t1"; gene_id "Ledus.S1G381500"
Ledus.S1	AUGUSTUS	stop_codon	30986958	30986960	.	-	0	transcript_id "Ledus.S1G381500.t1"; gene_id "Ledus.S1G381500"
Ledus.S1	AUGUSTUS	CDS	30986961	30987062	0.48	-	0	transcript_id "Ledus.S1G381500.t1"; gene_id "Ledus.S1G381500"
Ledus.S1	AUGUSTUS	exon	30986961	30987062	.	-	.	transcript_id "Ledus.S1G381500.t1"; gene_id "Ledus.S1G381500"
Ledus.S1	AUGUSTUS	intron	30987063	30987261	.	-	.	transcript_id "Ledus.S1G381500.t1"; gene_id "Ledus.S1G381500"
Ledus.S1	AUGUSTUS	CDS	30987262	30987328	0.56	-	1	transcript_id "Ledus.S1G381500.t1"; gene_id "Ledus.S1G381500"
Ledus.S1	AUGUSTUS	exon	30987262	30987328	.	-	.	transcript_id "Ledus.S1G381500.t1"; gene_id "Ledus.S1G381500"
Ledus.S1	AUGUSTUS	intron	30987329	30987483	.	-	.	transcript_id "Ledus.S1G381500.t1"; gene_id "Ledus.S1G381500"
Ledus.S1	AUGUSTUS	CDS	30987484	30987695	0.52	-	0	transcript_id "Ledus.S1G381500.t1"; gene_id "Ledus.S1G381500"
Ledus.S1	AUGUSTUS	exon	30987484	30987695	.	-	.	transcript_id "Ledus.S1G381500.t1"; gene_id "Ledus.S1G381500"
Ledus.S1	AUGUSTUS	start_codon	30987693	30987695	.	-	0	transcript_id "Ledus.S1G381500.t1"; gene_id "Ledus.S1G381500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1531.t1 is derived from g8392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10815319	10819336	.	+	.	Ledus.S2G141300
Ledus.S2	AUGUSTUS	transcript	10815319	10819336	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	start_codon	10815319	10815321	.	+	0	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10815319	10815486	0.94	+	0	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10815319	10815486	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10815487	10815629	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10815630	10815706	1	+	0	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10815630	10815706	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10815707	10815885	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10815886	10816047	1	+	1	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10815886	10816047	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10816048	10816173	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10816174	10816384	1	+	1	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10816174	10816384	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10816385	10816523	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10816524	10816610	1	+	0	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10816524	10816610	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10816611	10816727	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10816728	10816867	1	+	0	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10816728	10816867	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10816868	10817065	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10817066	10817146	1	+	1	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10817066	10817146	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10817147	10817291	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10817292	10817356	1	+	1	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10817292	10817356	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10817357	10817493	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10817494	10817672	1	+	2	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10817494	10817672	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10817673	10817791	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10817792	10817922	1	+	0	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10817792	10817922	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10817923	10818074	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10818075	10818162	1	+	1	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10818075	10818162	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10818163	10818313	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10818314	10818536	0.98	+	0	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10818314	10818536	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10818537	10818643	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10818644	10818753	1	+	2	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10818644	10818753	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	intron	10818754	10818856	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	CDS	10818857	10819336	0.93	+	0	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	exon	10818857	10819336	.	+	.	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
Ledus.S2	AUGUSTUS	stop_codon	10819337	10819339	.	+	0	transcript_id "Ledus.S2G141300.t1"; gene_id "Ledus.S2G141300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1028.t1 is derived from g7889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6845625	6846131	.	-	.	Ledus.S2G091000
Ledus.S2	AUGUSTUS	transcript	6845625	6846131	.	-	.	transcript_id "Ledus.S2G091000.t1"; gene_id "Ledus.S2G091000"
Ledus.S2	AUGUSTUS	stop_codon	6845622	6845624	.	-	0	transcript_id "Ledus.S2G091000.t1"; gene_id "Ledus.S2G091000"
Ledus.S2	AUGUSTUS	CDS	6845625	6846131	0.95	-	0	transcript_id "Ledus.S2G091000.t1"; gene_id "Ledus.S2G091000"
Ledus.S2	AUGUSTUS	exon	6845625	6846131	.	-	.	transcript_id "Ledus.S2G091000.t1"; gene_id "Ledus.S2G091000"
Ledus.S2	AUGUSTUS	start_codon	6846129	6846131	.	-	0	transcript_id "Ledus.S2G091000.t1"; gene_id "Ledus.S2G091000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8517.t1 is derived from g13189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12411594	12412408	.	+	.	Ledus.S5G129500
Ledus.S5	AUGUSTUS	transcript	12411594	12412408	.	+	.	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	start_codon	12411594	12411596	.	+	0	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	CDS	12411594	12411618	1	+	0	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	exon	12411594	12411618	.	+	.	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	intron	12411619	12411703	.	+	.	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	CDS	12411704	12411875	1	+	2	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	exon	12411704	12411875	.	+	.	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	intron	12411876	12411973	.	+	.	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	CDS	12411974	12412142	1	+	1	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	exon	12411974	12412142	.	+	.	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	intron	12412143	12412258	.	+	.	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	CDS	12412259	12412408	1	+	0	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	exon	12412259	12412408	.	+	.	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
Ledus.S5	AUGUSTUS	stop_codon	12412409	12412411	.	+	0	transcript_id "Ledus.S5G129500.t1"; gene_id "Ledus.S5G129500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2293.t1 is derived from g9156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17054148	17055992	.	-	.	Ledus.S2G217500
Ledus.S2	AUGUSTUS	transcript	17054148	17055992	.	-	.	transcript_id "Ledus.S2G217500.t1"; gene_id "Ledus.S2G217500"
Ledus.S2	AUGUSTUS	stop_codon	17054145	17054147	.	-	0	transcript_id "Ledus.S2G217500.t1"; gene_id "Ledus.S2G217500"
Ledus.S2	AUGUSTUS	CDS	17054148	17055992	1	-	0	transcript_id "Ledus.S2G217500.t1"; gene_id "Ledus.S2G217500"
Ledus.S2	AUGUSTUS	exon	17054148	17055992	.	-	.	transcript_id "Ledus.S2G217500.t1"; gene_id "Ledus.S2G217500"
Ledus.S2	AUGUSTUS	start_codon	17055990	17055992	.	-	0	transcript_id "Ledus.S2G217500.t1"; gene_id "Ledus.S2G217500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12567.t1 is derived from g6189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12902302	12903216	.	+	.	Ledus.S4G172300
Ledus.S4	AUGUSTUS	transcript	12902302	12903216	.	+	.	transcript_id "Ledus.S4G172300.t1"; gene_id "Ledus.S4G172300"
Ledus.S4	AUGUSTUS	start_codon	12902302	12902304	.	+	0	transcript_id "Ledus.S4G172300.t1"; gene_id "Ledus.S4G172300"
Ledus.S4	AUGUSTUS	CDS	12902302	12903216	0.92	+	0	transcript_id "Ledus.S4G172300.t1"; gene_id "Ledus.S4G172300"
Ledus.S4	AUGUSTUS	exon	12902302	12903216	.	+	.	transcript_id "Ledus.S4G172300.t1"; gene_id "Ledus.S4G172300"
Ledus.S4	AUGUSTUS	stop_codon	12903217	12903219	.	+	0	transcript_id "Ledus.S4G172300.t1"; gene_id "Ledus.S4G172300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1246.t1 is derived from g8107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8855613	8857136	.	-	.	Ledus.S2G112800
Ledus.S2	AUGUSTUS	transcript	8855613	8857136	.	-	.	transcript_id "Ledus.S2G112800.t1"; gene_id "Ledus.S2G112800"
Ledus.S2	AUGUSTUS	stop_codon	8855610	8855612	.	-	0	transcript_id "Ledus.S2G112800.t1"; gene_id "Ledus.S2G112800"
Ledus.S2	AUGUSTUS	CDS	8855613	8857136	0.99	-	0	transcript_id "Ledus.S2G112800.t1"; gene_id "Ledus.S2G112800"
Ledus.S2	AUGUSTUS	exon	8855613	8857136	.	-	.	transcript_id "Ledus.S2G112800.t1"; gene_id "Ledus.S2G112800"
Ledus.S2	AUGUSTUS	start_codon	8857134	8857136	.	-	0	transcript_id "Ledus.S2G112800.t1"; gene_id "Ledus.S2G112800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9897.t1 is derived from g10927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11015603	11016679	.	-	.	Ledus.S3G137400
Ledus.S3	AUGUSTUS	transcript	11015603	11016679	.	-	.	transcript_id "Ledus.S3G137400.t1"; gene_id "Ledus.S3G137400"
Ledus.S3	AUGUSTUS	stop_codon	11015600	11015602	.	-	0	transcript_id "Ledus.S3G137400.t1"; gene_id "Ledus.S3G137400"
Ledus.S3	AUGUSTUS	CDS	11015603	11016679	0.85	-	0	transcript_id "Ledus.S3G137400.t1"; gene_id "Ledus.S3G137400"
Ledus.S3	AUGUSTUS	exon	11015603	11016679	.	-	.	transcript_id "Ledus.S3G137400.t1"; gene_id "Ledus.S3G137400"
Ledus.S3	AUGUSTUS	start_codon	11016677	11016679	.	-	0	transcript_id "Ledus.S3G137400.t1"; gene_id "Ledus.S3G137400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6636.t1 is derived from g4079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32807044	32807545	.	+	.	Ledus.S1G405700
Ledus.S1	AUGUSTUS	transcript	32807044	32807545	.	+	.	transcript_id "Ledus.S1G405700.t1"; gene_id "Ledus.S1G405700"
Ledus.S1	AUGUSTUS	start_codon	32807044	32807046	.	+	0	transcript_id "Ledus.S1G405700.t1"; gene_id "Ledus.S1G405700"
Ledus.S1	AUGUSTUS	CDS	32807044	32807175	0.59	+	0	transcript_id "Ledus.S1G405700.t1"; gene_id "Ledus.S1G405700"
Ledus.S1	AUGUSTUS	exon	32807044	32807175	.	+	.	transcript_id "Ledus.S1G405700.t1"; gene_id "Ledus.S1G405700"
Ledus.S1	AUGUSTUS	intron	32807176	32807278	.	+	.	transcript_id "Ledus.S1G405700.t1"; gene_id "Ledus.S1G405700"
Ledus.S1	AUGUSTUS	CDS	32807279	32807545	0.96	+	0	transcript_id "Ledus.S1G405700.t1"; gene_id "Ledus.S1G405700"
Ledus.S1	AUGUSTUS	exon	32807279	32807545	.	+	.	transcript_id "Ledus.S1G405700.t1"; gene_id "Ledus.S1G405700"
Ledus.S1	AUGUSTUS	stop_codon	32807546	32807548	.	+	0	transcript_id "Ledus.S1G405700.t1"; gene_id "Ledus.S1G405700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8286.t1 is derived from g12957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10466321	10466650	.	+	.	Ledus.S5G106400
Ledus.S5	AUGUSTUS	transcript	10466321	10466650	.	+	.	transcript_id "Ledus.S5G106400.t1"; gene_id "Ledus.S5G106400"
Ledus.S5	AUGUSTUS	start_codon	10466321	10466323	.	+	0	transcript_id "Ledus.S5G106400.t1"; gene_id "Ledus.S5G106400"
Ledus.S5	AUGUSTUS	CDS	10466321	10466650	0.91	+	0	transcript_id "Ledus.S5G106400.t1"; gene_id "Ledus.S5G106400"
Ledus.S5	AUGUSTUS	exon	10466321	10466650	.	+	.	transcript_id "Ledus.S5G106400.t1"; gene_id "Ledus.S5G106400"
Ledus.S5	AUGUSTUS	stop_codon	10466651	10466653	.	+	0	transcript_id "Ledus.S5G106400.t1"; gene_id "Ledus.S5G106400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8830.t1 is derived from g9860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2194870	2197186	.	-	.	Ledus.S3G030700
Ledus.S3	AUGUSTUS	transcript	2194870	2197186	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	stop_codon	2194867	2194869	.	-	0	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	CDS	2194870	2195007	0.95	-	0	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	exon	2194870	2195007	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	intron	2195008	2195103	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	CDS	2195104	2195108	0.98	-	2	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	exon	2195104	2195108	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	intron	2195109	2195260	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	CDS	2195261	2195403	0.69	-	1	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	exon	2195261	2195403	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	intron	2195404	2195597	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	CDS	2195598	2195782	1	-	0	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	exon	2195598	2195782	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	intron	2195783	2195868	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	CDS	2195869	2195971	1	-	1	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	exon	2195869	2195971	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	intron	2195972	2196138	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	CDS	2196139	2196185	1	-	0	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	exon	2196139	2196185	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	intron	2196186	2196274	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	CDS	2196275	2196478	1	-	0	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	exon	2196275	2196478	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	intron	2196479	2196553	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	CDS	2196554	2196739	1	-	0	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	exon	2196554	2196739	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	intron	2196740	2196826	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	CDS	2196827	2197186	0.9	-	0	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	exon	2196827	2197186	.	-	.	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
Ledus.S3	AUGUSTUS	start_codon	2197184	2197186	.	-	0	transcript_id "Ledus.S3G030700.t1"; gene_id "Ledus.S3G030700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9752.t1 is derived from g10782.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9587759	9589411	.	-	.	Ledus.S3G122900
Ledus.S3	AUGUSTUS	transcript	9587759	9589411	.	-	.	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	stop_codon	9587756	9587758	.	-	0	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	CDS	9587759	9587926	0.74	-	0	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	exon	9587759	9587926	.	-	.	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	intron	9587927	9588054	.	-	.	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	CDS	9588055	9588165	0.8	-	0	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	exon	9588055	9588165	.	-	.	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	intron	9588166	9588256	.	-	.	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	CDS	9588257	9588271	0.8	-	0	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	exon	9588257	9588271	.	-	.	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	intron	9588272	9588483	.	-	.	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	CDS	9588484	9588792	1	-	0	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	exon	9588484	9588792	.	-	.	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	intron	9588793	9589051	.	-	.	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	CDS	9589052	9589173	0.97	-	2	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	exon	9589052	9589173	.	-	.	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	intron	9589174	9589272	.	-	.	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	CDS	9589273	9589411	0.54	-	0	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	exon	9589273	9589411	.	-	.	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
Ledus.S3	AUGUSTUS	start_codon	9589409	9589411	.	-	0	transcript_id "Ledus.S3G122900.t1"; gene_id "Ledus.S3G122900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8780.t1 is derived from g9810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1928967	1931971	.	-	.	Ledus.S3G025700
Ledus.S3	AUGUSTUS	transcript	1928967	1931971	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	stop_codon	1928964	1928966	.	-	0	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	CDS	1928967	1929847	0.94	-	2	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	exon	1928967	1929847	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	intron	1929848	1929915	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	CDS	1929916	1930285	0.97	-	0	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	exon	1929916	1930285	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	intron	1930286	1930373	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	CDS	1930374	1930426	0.74	-	2	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	exon	1930374	1930426	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	intron	1930427	1930501	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	CDS	1930502	1930762	0.75	-	2	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	exon	1930502	1930762	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	intron	1930763	1930841	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	CDS	1930842	1930886	0.67	-	2	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	exon	1930842	1930886	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	intron	1930887	1930972	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	CDS	1930973	1931215	1	-	2	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	exon	1930973	1931215	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	intron	1931216	1931328	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	CDS	1931329	1931554	1	-	0	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	exon	1931329	1931554	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	intron	1931555	1931628	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	CDS	1931629	1931722	0.9	-	1	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	exon	1931629	1931722	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	intron	1931723	1931843	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	CDS	1931844	1931971	0.97	-	0	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	exon	1931844	1931971	.	-	.	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	start_codon	1931969	1931971	.	-	0	transcript_id "Ledus.S3G025700.t1"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	transcript	1928967	1929827	.	-	.	transcript_id "Ledus.S3G025700.t2"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	stop_codon	1928964	1928966	.	-	0	transcript_id "Ledus.S3G025700.t2"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	CDS	1928967	1929827	0.86	-	0	transcript_id "Ledus.S3G025700.t2"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	exon	1928967	1929827	.	-	.	transcript_id "Ledus.S3G025700.t2"; gene_id "Ledus.S3G025700"
Ledus.S3	AUGUSTUS	start_codon	1929825	1929827	.	-	0	transcript_id "Ledus.S3G025700.t2"; gene_id "Ledus.S3G025700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5714.t1 is derived from g3153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26142370	26142582	.	+	.	Ledus.S1G313500
Ledus.S1	AUGUSTUS	transcript	26142370	26142582	.	+	.	transcript_id "Ledus.S1G313500.t1"; gene_id "Ledus.S1G313500"
Ledus.S1	AUGUSTUS	start_codon	26142370	26142372	.	+	0	transcript_id "Ledus.S1G313500.t1"; gene_id "Ledus.S1G313500"
Ledus.S1	AUGUSTUS	CDS	26142370	26142582	0.84	+	0	transcript_id "Ledus.S1G313500.t1"; gene_id "Ledus.S1G313500"
Ledus.S1	AUGUSTUS	exon	26142370	26142582	.	+	.	transcript_id "Ledus.S1G313500.t1"; gene_id "Ledus.S1G313500"
Ledus.S1	AUGUSTUS	stop_codon	26142583	26142585	.	+	0	transcript_id "Ledus.S1G313500.t1"; gene_id "Ledus.S1G313500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7312.t1 is derived from g11983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1007526	1008010	.	+	.	Ledus.S5G009000
Ledus.S5	AUGUSTUS	transcript	1007526	1008010	.	+	.	transcript_id "Ledus.S5G009000.t1"; gene_id "Ledus.S5G009000"
Ledus.S5	AUGUSTUS	start_codon	1007526	1007528	.	+	0	transcript_id "Ledus.S5G009000.t1"; gene_id "Ledus.S5G009000"
Ledus.S5	AUGUSTUS	CDS	1007526	1007622	0.62	+	0	transcript_id "Ledus.S5G009000.t1"; gene_id "Ledus.S5G009000"
Ledus.S5	AUGUSTUS	exon	1007526	1007622	.	+	.	transcript_id "Ledus.S5G009000.t1"; gene_id "Ledus.S5G009000"
Ledus.S5	AUGUSTUS	intron	1007623	1007756	.	+	.	transcript_id "Ledus.S5G009000.t1"; gene_id "Ledus.S5G009000"
Ledus.S5	AUGUSTUS	CDS	1007757	1008010	0.79	+	2	transcript_id "Ledus.S5G009000.t1"; gene_id "Ledus.S5G009000"
Ledus.S5	AUGUSTUS	exon	1007757	1008010	.	+	.	transcript_id "Ledus.S5G009000.t1"; gene_id "Ledus.S5G009000"
Ledus.S5	AUGUSTUS	stop_codon	1008011	1008013	.	+	0	transcript_id "Ledus.S5G009000.t1"; gene_id "Ledus.S5G009000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7525.t1 is derived from g12196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3598804	3600411	.	-	.	Ledus.S5G030300
Ledus.S5	AUGUSTUS	transcript	3598804	3600411	.	-	.	transcript_id "Ledus.S5G030300.t1"; gene_id "Ledus.S5G030300"
Ledus.S5	AUGUSTUS	stop_codon	3598801	3598803	.	-	0	transcript_id "Ledus.S5G030300.t1"; gene_id "Ledus.S5G030300"
Ledus.S5	AUGUSTUS	CDS	3598804	3600411	1	-	0	transcript_id "Ledus.S5G030300.t1"; gene_id "Ledus.S5G030300"
Ledus.S5	AUGUSTUS	exon	3598804	3600411	.	-	.	transcript_id "Ledus.S5G030300.t1"; gene_id "Ledus.S5G030300"
Ledus.S5	AUGUSTUS	start_codon	3600409	3600411	.	-	0	transcript_id "Ledus.S5G030300.t1"; gene_id "Ledus.S5G030300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10554.t1 is derived from g11584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16080773	16081804	.	+	.	Ledus.S3G203100
Ledus.S3	AUGUSTUS	transcript	16080773	16081804	.	+	.	transcript_id "Ledus.S3G203100.t1"; gene_id "Ledus.S3G203100"
Ledus.S3	AUGUSTUS	start_codon	16080773	16080775	.	+	0	transcript_id "Ledus.S3G203100.t1"; gene_id "Ledus.S3G203100"
Ledus.S3	AUGUSTUS	CDS	16080773	16081804	1	+	0	transcript_id "Ledus.S3G203100.t1"; gene_id "Ledus.S3G203100"
Ledus.S3	AUGUSTUS	exon	16080773	16081804	.	+	.	transcript_id "Ledus.S3G203100.t1"; gene_id "Ledus.S3G203100"
Ledus.S3	AUGUSTUS	stop_codon	16081805	16081807	.	+	0	transcript_id "Ledus.S3G203100.t1"; gene_id "Ledus.S3G203100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8835.t1 is derived from g9865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2211652	2213151	.	+	.	Ledus.S3G031200
Ledus.S3	AUGUSTUS	transcript	2211652	2213151	.	+	.	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	start_codon	2211652	2211654	.	+	0	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	CDS	2211652	2211663	0.54	+	0	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	exon	2211652	2211663	.	+	.	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	intron	2211664	2211937	.	+	.	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	CDS	2211938	2212186	0.52	+	0	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	exon	2211938	2212186	.	+	.	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	intron	2212187	2212293	.	+	.	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	CDS	2212294	2212436	0.89	+	0	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	exon	2212294	2212436	.	+	.	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	intron	2212437	2212525	.	+	.	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	CDS	2212526	2212707	1	+	1	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	exon	2212526	2212707	.	+	.	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	intron	2212708	2212793	.	+	.	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	CDS	2212794	2212904	0.7	+	2	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	exon	2212794	2212904	.	+	.	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	intron	2212905	2213005	.	+	.	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	CDS	2213006	2213151	0.49	+	2	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	exon	2213006	2213151	.	+	.	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
Ledus.S3	AUGUSTUS	stop_codon	2213152	2213154	.	+	0	transcript_id "Ledus.S3G031200.t1"; gene_id "Ledus.S3G031200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5456.t1 is derived from g2895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24386391	24389348	.	-	.	Ledus.S1G287700
Ledus.S1	AUGUSTUS	transcript	24386391	24389348	.	-	.	transcript_id "Ledus.S1G287700.t1"; gene_id "Ledus.S1G287700"
Ledus.S1	AUGUSTUS	stop_codon	24386388	24386390	.	-	0	transcript_id "Ledus.S1G287700.t1"; gene_id "Ledus.S1G287700"
Ledus.S1	AUGUSTUS	CDS	24386391	24389348	0.43	-	0	transcript_id "Ledus.S1G287700.t1"; gene_id "Ledus.S1G287700"
Ledus.S1	AUGUSTUS	exon	24386391	24389348	.	-	.	transcript_id "Ledus.S1G287700.t1"; gene_id "Ledus.S1G287700"
Ledus.S1	AUGUSTUS	start_codon	24389346	24389348	.	-	0	transcript_id "Ledus.S1G287700.t1"; gene_id "Ledus.S1G287700"
Ledus.S1	AUGUSTUS	transcript	24386391	24388160	.	-	.	transcript_id "Ledus.S1G287700.t2"; gene_id "Ledus.S1G287700"
Ledus.S1	AUGUSTUS	stop_codon	24386388	24386390	.	-	0	transcript_id "Ledus.S1G287700.t2"; gene_id "Ledus.S1G287700"
Ledus.S1	AUGUSTUS	CDS	24386391	24388160	0.41	-	0	transcript_id "Ledus.S1G287700.t2"; gene_id "Ledus.S1G287700"
Ledus.S1	AUGUSTUS	exon	24386391	24388160	.	-	.	transcript_id "Ledus.S1G287700.t2"; gene_id "Ledus.S1G287700"
Ledus.S1	AUGUSTUS	start_codon	24388158	24388160	.	-	0	transcript_id "Ledus.S1G287700.t2"; gene_id "Ledus.S1G287700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3396.t1 is derived from g831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8048294	8050149	.	-	.	Ledus.S1G081700
Ledus.S1	AUGUSTUS	transcript	8048294	8050149	.	-	.	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	stop_codon	8048291	8048293	.	-	0	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	CDS	8048294	8048541	1	-	2	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	exon	8048294	8048541	.	-	.	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	intron	8048542	8048632	.	-	.	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	CDS	8048633	8048840	1	-	0	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	exon	8048633	8048840	.	-	.	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	intron	8048841	8048932	.	-	.	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	CDS	8048933	8049855	0.72	-	2	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	exon	8048933	8049855	.	-	.	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	intron	8049856	8049938	.	-	.	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	CDS	8049939	8049987	0.52	-	0	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	exon	8049939	8049987	.	-	.	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	intron	8049988	8050080	.	-	.	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	CDS	8050081	8050149	0.81	-	0	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	exon	8050081	8050149	.	-	.	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
Ledus.S1	AUGUSTUS	start_codon	8050147	8050149	.	-	0	transcript_id "Ledus.S1G081700.t1"; gene_id "Ledus.S1G081700"
# This transcript jg12742.t2 is derived from g6364.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12743.t1 is derived from g6365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14183256	14186123	.	+	.	Ledus.S4G189900
Ledus.S4	AUGUSTUS	transcript	14183256	14186123	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	start_codon	14183256	14183258	.	+	0	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14183256	14183358	0.67	+	0	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14183256	14183358	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14183359	14183568	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14183569	14183662	0.96	+	2	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14183569	14183662	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14183663	14183757	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14183758	14183870	0.96	+	1	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14183758	14183870	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14183871	14183947	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14183948	14184049	1	+	2	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14183948	14184049	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14184050	14184366	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14184367	14184431	1	+	2	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14184367	14184431	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14184432	14184594	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14184595	14184729	1	+	0	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14184595	14184729	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14184730	14184852	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14184853	14184949	1	+	0	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14184853	14184949	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14184950	14185037	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14185038	14185167	1	+	2	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14185038	14185167	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14185168	14185276	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14185277	14185455	0.97	+	1	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14185277	14185455	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14185456	14185562	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14185563	14185690	0.99	+	2	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14185563	14185690	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14185691	14185844	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14185845	14185946	1	+	0	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14185845	14185946	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14185947	14186024	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14186025	14186123	1	+	0	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14186025	14186123	.	+	.	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	stop_codon	14186124	14186126	.	+	0	transcript_id "Ledus.S4G189900.t1"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	transcript	14183256	14186123	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	start_codon	14183256	14183258	.	+	0	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14183256	14183358	0.68	+	0	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14183256	14183358	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14183359	14183568	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14183569	14183662	0.95	+	2	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14183569	14183662	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14183663	14183757	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14183758	14183870	0.95	+	1	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14183758	14183870	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14183871	14183947	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14183948	14184049	1	+	2	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14183948	14184049	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14184050	14184205	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14184206	14184270	0.67	+	2	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14184206	14184270	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14184271	14184332	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14184333	14184431	0.67	+	0	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14184333	14184431	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14184432	14184594	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14184595	14184729	1	+	0	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14184595	14184729	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14184730	14184852	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14184853	14184949	1	+	0	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14184853	14184949	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14184950	14185037	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14185038	14185167	0.99	+	2	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14185038	14185167	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14185168	14185276	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14185277	14185455	0.97	+	1	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14185277	14185455	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14185456	14185562	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14185563	14185690	0.92	+	2	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14185563	14185690	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14185691	14185844	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14185845	14185946	1	+	0	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14185845	14185946	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	intron	14185947	14186024	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	CDS	14186025	14186123	1	+	0	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	exon	14186025	14186123	.	+	.	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
Ledus.S4	AUGUSTUS	stop_codon	14186124	14186126	.	+	0	transcript_id "Ledus.S4G189900.t2"; gene_id "Ledus.S4G189900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1713.t1 is derived from g8574.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12078943	12082949	.	+	.	Ledus.S2G159500
Ledus.S2	AUGUSTUS	transcript	12078943	12082949	.	+	.	transcript_id "Ledus.S2G159500.t1"; gene_id "Ledus.S2G159500"
Ledus.S2	AUGUSTUS	start_codon	12078943	12078945	.	+	0	transcript_id "Ledus.S2G159500.t1"; gene_id "Ledus.S2G159500"
Ledus.S2	AUGUSTUS	CDS	12078943	12079105	1	+	0	transcript_id "Ledus.S2G159500.t1"; gene_id "Ledus.S2G159500"
Ledus.S2	AUGUSTUS	exon	12078943	12079105	.	+	.	transcript_id "Ledus.S2G159500.t1"; gene_id "Ledus.S2G159500"
Ledus.S2	AUGUSTUS	intron	12079106	12079218	.	+	.	transcript_id "Ledus.S2G159500.t1"; gene_id "Ledus.S2G159500"
Ledus.S2	AUGUSTUS	CDS	12079219	12079830	0.47	+	2	transcript_id "Ledus.S2G159500.t1"; gene_id "Ledus.S2G159500"
Ledus.S2	AUGUSTUS	exon	12079219	12079830	.	+	.	transcript_id "Ledus.S2G159500.t1"; gene_id "Ledus.S2G159500"
Ledus.S2	AUGUSTUS	intron	12079831	12079920	.	+	.	transcript_id "Ledus.S2G159500.t1"; gene_id "Ledus.S2G159500"
Ledus.S2	AUGUSTUS	CDS	12079921	12082949	0.87	+	2	transcript_id "Ledus.S2G159500.t1"; gene_id "Ledus.S2G159500"
Ledus.S2	AUGUSTUS	exon	12079921	12082949	.	+	.	transcript_id "Ledus.S2G159500.t1"; gene_id "Ledus.S2G159500"
Ledus.S2	AUGUSTUS	stop_codon	12082950	12082952	.	+	0	transcript_id "Ledus.S2G159500.t1"; gene_id "Ledus.S2G159500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg6210.t1 is derived from g3653.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29658825	29667737	.	+	.	Ledus.S1G363100
Ledus.S1	AUGUSTUS	transcript	29658825	29667227	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	start_codon	29658825	29658827	.	+	0	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29658825	29658905	0.74	+	0	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29658825	29658905	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29658906	29659099	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29659100	29659337	0.69	+	0	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29659100	29659337	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29659338	29659444	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29659445	29659656	1	+	2	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29659445	29659656	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29659657	29659749	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29659750	29659924	1	+	0	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29659750	29659924	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29659925	29660039	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29660040	29660180	0.99	+	2	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29660040	29660180	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29660181	29660330	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29660331	29660455	1	+	2	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29660331	29660455	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29660456	29660548	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29660549	29660661	1	+	0	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29660549	29660661	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29660662	29660774	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29660775	29660914	0.97	+	1	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29660775	29660914	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29660915	29661035	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29661036	29661201	0.95	+	2	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29661036	29661201	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29661202	29661299	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29661300	29662137	0.72	+	1	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29661300	29662137	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29662138	29662303	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29662304	29662462	0.94	+	0	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29662304	29662462	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29662463	29662642	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29662643	29662700	1	+	0	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29662643	29662700	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29662701	29662878	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29662879	29663012	1	+	2	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29662879	29663012	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29663013	29663168	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29663169	29663287	1	+	0	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29663169	29663287	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29663288	29663380	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29663381	29663750	1	+	1	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29663381	29663750	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29663751	29663856	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29663857	29664166	0.96	+	0	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29663857	29664166	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29664167	29664231	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29664232	29666262	0.21	+	2	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29664232	29666262	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29666263	29666465	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29666466	29666530	0.64	+	2	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29666466	29666530	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29666531	29666689	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29666690	29666789	1	+	0	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29666690	29666789	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29666790	29666961	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29666962	29667227	0.9	+	2	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29666962	29667227	.	+	.	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	stop_codon	29667228	29667230	.	+	0	transcript_id "Ledus.S1G363100.t1"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	transcript	29658825	29667737	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	start_codon	29658825	29658827	.	+	0	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29658825	29658905	0.69	+	0	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29658825	29658905	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29658906	29659099	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29659100	29659337	0.66	+	0	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29659100	29659337	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29659338	29659444	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29659445	29659656	1	+	2	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29659445	29659656	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29659657	29659749	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29659750	29659924	1	+	0	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29659750	29659924	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29659925	29660039	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29660040	29660180	1	+	2	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29660040	29660180	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29660181	29660330	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29660331	29660455	1	+	2	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29660331	29660455	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29660456	29660548	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29660549	29660661	1	+	0	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29660549	29660661	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29660662	29660774	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29660775	29660914	1	+	1	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29660775	29660914	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29660915	29661035	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29661036	29661201	0.97	+	2	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29661036	29661201	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29661202	29661299	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29661300	29662137	0.76	+	1	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29661300	29662137	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29662138	29662303	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29662304	29662462	0.99	+	0	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29662304	29662462	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29662463	29662642	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29662643	29662700	1	+	0	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29662643	29662700	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29662701	29662878	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29662879	29663012	1	+	2	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29662879	29663012	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29663013	29663168	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29663169	29663287	1	+	0	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29663169	29663287	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29663288	29663380	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29663381	29663750	1	+	1	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29663381	29663750	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29663751	29663856	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29663857	29664166	0.98	+	0	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29663857	29664166	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29664167	29664231	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29664232	29666262	0.08	+	2	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29664232	29666262	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29666263	29666465	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29666466	29666530	0.54	+	2	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29666466	29666530	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29666531	29666689	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29666690	29666789	0.92	+	0	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29666690	29666789	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29666790	29667672	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29667673	29667737	0.88	+	2	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29667673	29667737	.	+	.	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	stop_codon	29667738	29667740	.	+	0	transcript_id "Ledus.S1G363100.t2"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	transcript	29658825	29667227	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	start_codon	29658825	29658827	.	+	0	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29658825	29658905	0.74	+	0	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29658825	29658905	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29658906	29659099	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29659100	29659337	0.7	+	0	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29659100	29659337	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29659338	29659444	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29659445	29659656	1	+	2	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29659445	29659656	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29659657	29659749	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29659750	29659924	1	+	0	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29659750	29659924	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29659925	29660039	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29660040	29660180	1	+	2	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29660040	29660180	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29660181	29660330	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29660331	29660455	1	+	2	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29660331	29660455	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29660456	29660548	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29660549	29660661	1	+	0	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29660549	29660661	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29660662	29660774	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29660775	29660914	0.97	+	1	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29660775	29660914	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29660915	29661035	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29661036	29661201	0.99	+	2	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29661036	29661201	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29661202	29661299	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29661300	29662137	0.74	+	1	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29661300	29662137	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29662138	29662303	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29662304	29662462	0.94	+	0	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29662304	29662462	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29662463	29662642	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29662643	29662700	1	+	0	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29662643	29662700	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29662701	29662878	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29662879	29663012	1	+	2	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29662879	29663012	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29663013	29663168	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29663169	29663287	1	+	0	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29663169	29663287	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29663288	29663380	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29663381	29663750	1	+	1	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29663381	29663750	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29663751	29663856	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29663857	29664166	0.94	+	0	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29663857	29664166	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29664167	29664231	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29664232	29666262	0.16	+	2	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29664232	29666262	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29666263	29666465	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29666466	29666530	0.13	+	2	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29666466	29666530	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29666531	29666686	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29666687	29666789	0.24	+	0	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29666687	29666789	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	intron	29666790	29666961	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	CDS	29666962	29667227	0.86	+	2	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	exon	29666962	29667227	.	+	.	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
Ledus.S1	AUGUSTUS	stop_codon	29667228	29667230	.	+	0	transcript_id "Ledus.S1G363100.t3"; gene_id "Ledus.S1G363100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9038.t1 is derived from g10068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4002534	4009578	.	+	.	Ledus.S3G051500
Ledus.S3	AUGUSTUS	transcript	4002534	4009578	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	start_codon	4002534	4002536	.	+	0	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4002534	4002675	0.72	+	0	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4002534	4002675	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4002676	4002820	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4002821	4003071	0.93	+	2	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4002821	4003071	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4003072	4003728	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4003729	4003928	1	+	0	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4003729	4003928	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4003929	4004137	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4004138	4004291	1	+	1	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4004138	4004291	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4004292	4004496	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4004497	4004606	1	+	0	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4004497	4004606	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4004607	4004802	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4004803	4004872	1	+	1	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4004803	4004872	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4004873	4004964	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4004965	4005044	1	+	0	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4004965	4005044	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4005045	4005208	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4005209	4005287	1	+	1	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4005209	4005287	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4005288	4005424	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4005425	4005465	1	+	0	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4005425	4005465	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4005466	4005651	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4005652	4005774	1	+	1	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4005652	4005774	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4005775	4005862	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4005863	4006010	1	+	1	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4005863	4006010	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4006011	4006130	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4006131	4006245	1	+	0	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4006131	4006245	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4006246	4006508	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4006509	4006591	0.99	+	2	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4006509	4006591	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4006592	4006717	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4006718	4006792	0.99	+	0	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4006718	4006792	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4006793	4006956	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4006957	4007031	1	+	0	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4006957	4007031	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4007032	4007254	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4007255	4008144	0.9	+	0	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4007255	4008144	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4008145	4008424	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4008425	4008528	0.79	+	1	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4008425	4008528	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4008529	4008654	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4008655	4008766	0.68	+	2	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4008655	4008766	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4008767	4008867	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4008868	4009295	0.55	+	1	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4008868	4009295	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	intron	4009296	4009507	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	CDS	4009508	4009578	0.96	+	2	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	exon	4009508	4009578	.	+	.	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
Ledus.S3	AUGUSTUS	stop_codon	4009579	4009581	.	+	0	transcript_id "Ledus.S3G051500.t1"; gene_id "Ledus.S3G051500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5604.t1 is derived from g3043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25332336	25337861	.	-	.	Ledus.S1G302500
Ledus.S1	AUGUSTUS	transcript	25332336	25337861	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	stop_codon	25332333	25332335	.	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25332336	25332465	0.99	-	1	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25332336	25332465	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25332466	25332565	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25332566	25332660	1	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25332566	25332660	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25332661	25332776	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25332777	25332845	0.94	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25332777	25332845	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25332846	25332950	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25332951	25333022	0.94	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25332951	25333022	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25333023	25333101	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25333102	25333251	1	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25333102	25333251	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25333252	25333343	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25333344	25333418	1	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25333344	25333418	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25333419	25333519	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25333520	25333582	0.99	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25333520	25333582	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25333583	25333700	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25333701	25333756	0.97	-	2	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25333701	25333756	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25333757	25333864	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25333865	25335299	1	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25333865	25335299	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25335300	25335405	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25335406	25335675	1	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25335406	25335675	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25335676	25335771	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25335772	25336023	0.99	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25335772	25336023	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25336024	25336120	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25336121	25336279	1	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25336121	25336279	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25336280	25336370	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25336371	25336784	0.95	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25336371	25336784	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25336785	25336869	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25336870	25336959	1	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25336870	25336959	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25336960	25337088	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25337089	25337191	1	-	1	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25337089	25337191	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25337192	25337287	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25337288	25337428	1	-	1	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25337288	25337428	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25337429	25337521	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25337522	25337619	1	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25337522	25337619	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	intron	25337620	25337702	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	CDS	25337703	25337861	0.63	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	exon	25337703	25337861	.	-	.	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
Ledus.S1	AUGUSTUS	start_codon	25337859	25337861	.	-	0	transcript_id "Ledus.S1G302500.t1"; gene_id "Ledus.S1G302500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10001.t1 is derived from g11031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11797398	11803033	.	+	.	Ledus.S3G147800
Ledus.S3	AUGUSTUS	transcript	11797398	11803033	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	start_codon	11797398	11797400	.	+	0	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11797398	11797428	0.9	+	0	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11797398	11797428	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11797429	11797505	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11797506	11797646	1	+	2	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11797506	11797646	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11797647	11797744	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11797745	11797865	1	+	2	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11797745	11797865	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11797866	11798026	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11798027	11798101	1	+	1	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11798027	11798101	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11798102	11798368	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11798369	11798440	1	+	1	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11798369	11798440	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11798441	11798762	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11798763	11798834	1	+	1	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11798763	11798834	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11798835	11798994	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11798995	11799066	1	+	1	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11798995	11799066	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11799067	11799298	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11799299	11799370	1	+	1	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11799299	11799370	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11799371	11799689	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11799690	11799761	1	+	1	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11799690	11799761	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11799762	11799922	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11799923	11799997	1	+	1	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11799923	11799997	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11799998	11800120	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11800121	11800180	1	+	1	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11800121	11800180	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11800181	11800328	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11800329	11800534	1	+	1	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11800329	11800534	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11800535	11800678	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11800679	11800878	1	+	2	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11800679	11800878	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11800879	11800978	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11800979	11801174	1	+	0	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11800979	11801174	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11801175	11801296	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11801297	11801475	1	+	2	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11801297	11801475	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11801476	11801579	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11801580	11801684	1	+	0	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11801580	11801684	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11801685	11801778	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11801779	11801901	0.96	+	0	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11801779	11801901	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11801902	11802004	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11802005	11802243	0.82	+	0	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11802005	11802243	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11802244	11802488	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11802489	11802834	0.84	+	1	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11802489	11802834	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	intron	11802835	11802994	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	CDS	11802995	11803033	1	+	0	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	exon	11802995	11803033	.	+	.	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
Ledus.S3	AUGUSTUS	stop_codon	11803034	11803036	.	+	0	transcript_id "Ledus.S3G147800.t1"; gene_id "Ledus.S3G147800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3889.t1 is derived from g1325.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13420600	13424598	.	-	.	Ledus.S1G131000
Ledus.S1	AUGUSTUS	transcript	13420600	13424598	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	stop_codon	13420597	13420599	.	-	0	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13420600	13420688	0.64	-	2	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13420600	13420688	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13420689	13420790	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13420791	13420936	0.42	-	1	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13420791	13420936	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13420937	13421030	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13421031	13421473	0.36	-	0	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13421031	13421473	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13421474	13421588	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13421589	13421640	0.62	-	1	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13421589	13421640	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13421641	13421742	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13421743	13421828	0.52	-	0	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13421743	13421828	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13421829	13421948	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13421949	13422069	0.95	-	1	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13421949	13422069	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13422070	13422210	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13422211	13422302	1	-	0	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13422211	13422302	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13422303	13422531	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13422532	13422628	1	-	1	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13422532	13422628	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13422629	13422805	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13422806	13423497	0.78	-	0	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13422806	13423497	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13423498	13423572	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13423573	13423600	0.78	-	1	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13423573	13423600	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13423601	13423801	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13423802	13424019	1	-	0	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13423802	13424019	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13424020	13424169	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13424170	13424598	0.99	-	0	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13424170	13424598	.	-	.	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	start_codon	13424596	13424598	.	-	0	transcript_id "Ledus.S1G131000.t1"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	transcript	13420600	13424598	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	stop_codon	13420597	13420599	.	-	0	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13420600	13420688	0.59	-	2	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13420600	13420688	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13420689	13420790	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13420791	13420936	0.37	-	1	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13420791	13420936	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13420937	13421030	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13421031	13421473	0.34	-	0	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13421031	13421473	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13421474	13421588	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13421589	13421640	0.53	-	1	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13421589	13421640	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13421641	13421742	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13421743	13421828	0.45	-	0	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13421743	13421828	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13421829	13421948	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13421949	13422069	0.93	-	1	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13421949	13422069	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13422070	13422210	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13422211	13422302	1	-	0	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13422211	13422302	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13422303	13422531	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13422532	13422628	1	-	1	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13422532	13422628	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13422629	13422805	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13422806	13423534	1	-	1	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13422806	13423534	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13423535	13423801	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13423802	13424019	1	-	0	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13423802	13424019	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	intron	13424020	13424169	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	CDS	13424170	13424598	0.99	-	0	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	exon	13424170	13424598	.	-	.	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
Ledus.S1	AUGUSTUS	start_codon	13424596	13424598	.	-	0	transcript_id "Ledus.S1G131000.t2"; gene_id "Ledus.S1G131000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7752.t1 is derived from g12423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6010133	6011526	.	-	.	Ledus.S5G053000
Ledus.S5	AUGUSTUS	transcript	6010133	6011526	.	-	.	transcript_id "Ledus.S5G053000.t1"; gene_id "Ledus.S5G053000"
Ledus.S5	AUGUSTUS	stop_codon	6010130	6010132	.	-	0	transcript_id "Ledus.S5G053000.t1"; gene_id "Ledus.S5G053000"
Ledus.S5	AUGUSTUS	CDS	6010133	6010658	1	-	1	transcript_id "Ledus.S5G053000.t1"; gene_id "Ledus.S5G053000"
Ledus.S5	AUGUSTUS	exon	6010133	6010658	.	-	.	transcript_id "Ledus.S5G053000.t1"; gene_id "Ledus.S5G053000"
Ledus.S5	AUGUSTUS	intron	6010659	6010762	.	-	.	transcript_id "Ledus.S5G053000.t1"; gene_id "Ledus.S5G053000"
Ledus.S5	AUGUSTUS	CDS	6010763	6011526	0.9	-	0	transcript_id "Ledus.S5G053000.t1"; gene_id "Ledus.S5G053000"
Ledus.S5	AUGUSTUS	exon	6010763	6011526	.	-	.	transcript_id "Ledus.S5G053000.t1"; gene_id "Ledus.S5G053000"
Ledus.S5	AUGUSTUS	start_codon	6011524	6011526	.	-	0	transcript_id "Ledus.S5G053000.t1"; gene_id "Ledus.S5G053000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12576.t1 is derived from g6198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12932841	12934002	.	-	.	Ledus.S4G173200
Ledus.S4	AUGUSTUS	transcript	12932841	12934002	.	-	.	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	stop_codon	12932838	12932840	.	-	0	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	CDS	12932841	12933113	0.95	-	0	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	exon	12932841	12933113	.	-	.	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	intron	12933114	12933210	.	-	.	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	CDS	12933211	12933267	1	-	0	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	exon	12933211	12933267	.	-	.	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	intron	12933268	12933354	.	-	.	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	CDS	12933355	12933426	1	-	0	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	exon	12933355	12933426	.	-	.	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	intron	12933427	12933494	.	-	.	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	CDS	12933495	12933596	1	-	0	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	exon	12933495	12933596	.	-	.	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	intron	12933597	12933685	.	-	.	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	CDS	12933686	12933760	1	-	0	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	exon	12933686	12933760	.	-	.	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	intron	12933761	12933834	.	-	.	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	CDS	12933835	12934002	0.4	-	0	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	exon	12933835	12934002	.	-	.	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
Ledus.S4	AUGUSTUS	start_codon	12934000	12934002	.	-	0	transcript_id "Ledus.S4G173200.t1"; gene_id "Ledus.S4G173200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2998.t1 is derived from g433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5202434	5206151	.	-	.	Ledus.S1G041900
Ledus.S1	AUGUSTUS	transcript	5202434	5206151	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	stop_codon	5202431	5202433	.	-	0	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5202434	5202509	1	-	1	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5202434	5202509	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5202510	5202587	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5202588	5202718	1	-	0	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5202588	5202718	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5202719	5202810	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5202811	5202912	0.99	-	0	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5202811	5202912	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5202913	5203024	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5203025	5203113	0.79	-	2	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5203025	5203113	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5203114	5203218	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5203219	5203295	0.61	-	1	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5203219	5203295	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5203296	5203379	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5203380	5203522	1	-	0	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5203380	5203522	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5203523	5203615	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5203616	5203711	1	-	0	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5203616	5203711	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5203712	5203939	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5203940	5204099	1	-	1	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5203940	5204099	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5204100	5204208	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5204209	5204259	1	-	1	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5204209	5204259	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5204260	5204348	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5204349	5204426	1	-	1	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5204349	5204426	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5204427	5204602	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5204603	5204714	1	-	2	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5204603	5204714	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5204715	5204812	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5204813	5204871	1	-	1	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5204813	5204871	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5204872	5204972	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5204973	5205115	1	-	0	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5204973	5205115	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5205116	5205259	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5205260	5205384	1	-	2	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5205260	5205384	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5205385	5205557	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5205558	5205702	1	-	0	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5205558	5205702	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5205703	5205780	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5205781	5205907	1	-	1	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5205781	5205907	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	intron	5205908	5206077	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	CDS	5206078	5206151	1	-	0	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	exon	5206078	5206151	.	-	.	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
Ledus.S1	AUGUSTUS	start_codon	5206149	5206151	.	-	0	transcript_id "Ledus.S1G041900.t1"; gene_id "Ledus.S1G041900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5299.t1 is derived from g2738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23056262	23057398	.	+	.	Ledus.S1G272000
Ledus.S1	AUGUSTUS	transcript	23056262	23057398	.	+	.	transcript_id "Ledus.S1G272000.t1"; gene_id "Ledus.S1G272000"
Ledus.S1	AUGUSTUS	start_codon	23056262	23056264	.	+	0	transcript_id "Ledus.S1G272000.t1"; gene_id "Ledus.S1G272000"
Ledus.S1	AUGUSTUS	CDS	23056262	23057398	0.49	+	0	transcript_id "Ledus.S1G272000.t1"; gene_id "Ledus.S1G272000"
Ledus.S1	AUGUSTUS	exon	23056262	23057398	.	+	.	transcript_id "Ledus.S1G272000.t1"; gene_id "Ledus.S1G272000"
Ledus.S1	AUGUSTUS	stop_codon	23057399	23057401	.	+	0	transcript_id "Ledus.S1G272000.t1"; gene_id "Ledus.S1G272000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3288.t1 is derived from g723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7288245	7289706	.	-	.	Ledus.S1G070900
Ledus.S1	AUGUSTUS	transcript	7288245	7289706	.	-	.	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	stop_codon	7288242	7288244	.	-	0	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	CDS	7288245	7288837	0.98	-	2	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	exon	7288245	7288837	.	-	.	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	intron	7288838	7288913	.	-	.	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	CDS	7288914	7289096	0.96	-	2	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	exon	7288914	7289096	.	-	.	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	intron	7289097	7289171	.	-	.	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	CDS	7289172	7289302	0.98	-	1	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	exon	7289172	7289302	.	-	.	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	intron	7289303	7289392	.	-	.	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	CDS	7289393	7289533	1	-	1	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	exon	7289393	7289533	.	-	.	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	intron	7289534	7289614	.	-	.	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	CDS	7289615	7289706	0.75	-	0	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	exon	7289615	7289706	.	-	.	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
Ledus.S1	AUGUSTUS	start_codon	7289704	7289706	.	-	0	transcript_id "Ledus.S1G070900.t1"; gene_id "Ledus.S1G070900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11978.t1 is derived from g5597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8250529	8252037	.	+	.	Ledus.S4G113400
Ledus.S4	AUGUSTUS	transcript	8250580	8252037	.	+	.	transcript_id "Ledus.S4G113400.t1"; gene_id "Ledus.S4G113400"
Ledus.S4	AUGUSTUS	start_codon	8250580	8250582	.	+	0	transcript_id "Ledus.S4G113400.t1"; gene_id "Ledus.S4G113400"
Ledus.S4	AUGUSTUS	CDS	8250580	8252037	1	+	0	transcript_id "Ledus.S4G113400.t1"; gene_id "Ledus.S4G113400"
Ledus.S4	AUGUSTUS	exon	8250580	8252037	.	+	.	transcript_id "Ledus.S4G113400.t1"; gene_id "Ledus.S4G113400"
Ledus.S4	AUGUSTUS	stop_codon	8252038	8252040	.	+	0	transcript_id "Ledus.S4G113400.t1"; gene_id "Ledus.S4G113400"
Ledus.S4	AUGUSTUS	transcript	8250529	8252037	.	+	.	transcript_id "Ledus.S4G113400.t2"; gene_id "Ledus.S4G113400"
Ledus.S4	AUGUSTUS	start_codon	8250529	8250531	.	+	0	transcript_id "Ledus.S4G113400.t2"; gene_id "Ledus.S4G113400"
Ledus.S4	AUGUSTUS	CDS	8250529	8252037	0.98	+	0	transcript_id "Ledus.S4G113400.t2"; gene_id "Ledus.S4G113400"
Ledus.S4	AUGUSTUS	exon	8250529	8252037	.	+	.	transcript_id "Ledus.S4G113400.t2"; gene_id "Ledus.S4G113400"
Ledus.S4	AUGUSTUS	stop_codon	8252038	8252040	.	+	0	transcript_id "Ledus.S4G113400.t2"; gene_id "Ledus.S4G113400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5123.t1 is derived from g2562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21855534	21858812	.	-	.	Ledus.S1G254400
Ledus.S1	AUGUSTUS	transcript	21855534	21858812	.	-	.	transcript_id "Ledus.S1G254400.t1"; gene_id "Ledus.S1G254400"
Ledus.S1	AUGUSTUS	stop_codon	21855531	21855533	.	-	0	transcript_id "Ledus.S1G254400.t1"; gene_id "Ledus.S1G254400"
Ledus.S1	AUGUSTUS	CDS	21855534	21858812	0.48	-	0	transcript_id "Ledus.S1G254400.t1"; gene_id "Ledus.S1G254400"
Ledus.S1	AUGUSTUS	exon	21855534	21858812	.	-	.	transcript_id "Ledus.S1G254400.t1"; gene_id "Ledus.S1G254400"
Ledus.S1	AUGUSTUS	start_codon	21858810	21858812	.	-	0	transcript_id "Ledus.S1G254400.t1"; gene_id "Ledus.S1G254400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3628.t1 is derived from g1064.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10273036	10274972	.	-	.	Ledus.S1G104900
Ledus.S1	AUGUSTUS	transcript	10273036	10274972	.	-	.	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	stop_codon	10273033	10273035	.	-	0	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	CDS	10273036	10273911	1	-	0	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	exon	10273036	10273911	.	-	.	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	intron	10273912	10274006	.	-	.	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	CDS	10274007	10274090	1	-	0	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	exon	10274007	10274090	.	-	.	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	intron	10274091	10274207	.	-	.	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	CDS	10274208	10274365	0.94	-	2	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	exon	10274208	10274365	.	-	.	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	intron	10274366	10274446	.	-	.	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	CDS	10274447	10274972	0.41	-	0	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	exon	10274447	10274972	.	-	.	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	start_codon	10274970	10274972	.	-	0	transcript_id "Ledus.S1G104900.t1"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	transcript	10273036	10274972	.	-	.	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	stop_codon	10273033	10273035	.	-	0	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	CDS	10273036	10273926	0.88	-	0	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	exon	10273036	10273926	.	-	.	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	intron	10273927	10274006	.	-	.	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	CDS	10274007	10274090	1	-	0	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	exon	10274007	10274090	.	-	.	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	intron	10274091	10274207	.	-	.	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	CDS	10274208	10274365	0.96	-	2	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	exon	10274208	10274365	.	-	.	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	intron	10274366	10274446	.	-	.	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	CDS	10274447	10274972	0.42	-	0	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	exon	10274447	10274972	.	-	.	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
Ledus.S1	AUGUSTUS	start_codon	10274970	10274972	.	-	0	transcript_id "Ledus.S1G104900.t2"; gene_id "Ledus.S1G104900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg593.t1 is derived from g7454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3536323	3537468	.	+	.	Ledus.S2G047500
Ledus.S2	AUGUSTUS	transcript	3536323	3537468	.	+	.	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	start_codon	3536323	3536325	.	+	0	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	CDS	3536323	3536516	0.98	+	0	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	exon	3536323	3536516	.	+	.	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	intron	3536517	3536635	.	+	.	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	CDS	3536636	3536787	1	+	1	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	exon	3536636	3536787	.	+	.	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	intron	3536788	3537047	.	+	.	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	CDS	3537048	3537173	1	+	2	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	exon	3537048	3537173	.	+	.	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	intron	3537174	3537262	.	+	.	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	CDS	3537263	3537468	1	+	2	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	exon	3537263	3537468	.	+	.	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
Ledus.S2	AUGUSTUS	stop_codon	3537469	3537471	.	+	0	transcript_id "Ledus.S2G047500.t1"; gene_id "Ledus.S2G047500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12184.t1 is derived from g5803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10195757	10196014	.	+	.	Ledus.S4G134000
Ledus.S4	AUGUSTUS	transcript	10195757	10196014	.	+	.	transcript_id "Ledus.S4G134000.t1"; gene_id "Ledus.S4G134000"
Ledus.S4	AUGUSTUS	start_codon	10195757	10195759	.	+	0	transcript_id "Ledus.S4G134000.t1"; gene_id "Ledus.S4G134000"
Ledus.S4	AUGUSTUS	CDS	10195757	10196014	0.53	+	0	transcript_id "Ledus.S4G134000.t1"; gene_id "Ledus.S4G134000"
Ledus.S4	AUGUSTUS	exon	10195757	10196014	.	+	.	transcript_id "Ledus.S4G134000.t1"; gene_id "Ledus.S4G134000"
Ledus.S4	AUGUSTUS	stop_codon	10196015	10196017	.	+	0	transcript_id "Ledus.S4G134000.t1"; gene_id "Ledus.S4G134000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12547.t1 is derived from g6169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12827831	12829842	.	+	.	Ledus.S4G170300
Ledus.S4	AUGUSTUS	transcript	12827831	12829842	.	+	.	transcript_id "Ledus.S4G170300.t1"; gene_id "Ledus.S4G170300"
Ledus.S4	AUGUSTUS	start_codon	12827831	12827833	.	+	0	transcript_id "Ledus.S4G170300.t1"; gene_id "Ledus.S4G170300"
Ledus.S4	AUGUSTUS	CDS	12827831	12827984	0.99	+	0	transcript_id "Ledus.S4G170300.t1"; gene_id "Ledus.S4G170300"
Ledus.S4	AUGUSTUS	exon	12827831	12827984	.	+	.	transcript_id "Ledus.S4G170300.t1"; gene_id "Ledus.S4G170300"
Ledus.S4	AUGUSTUS	intron	12827985	12828068	.	+	.	transcript_id "Ledus.S4G170300.t1"; gene_id "Ledus.S4G170300"
Ledus.S4	AUGUSTUS	CDS	12828069	12828198	1	+	2	transcript_id "Ledus.S4G170300.t1"; gene_id "Ledus.S4G170300"
Ledus.S4	AUGUSTUS	exon	12828069	12828198	.	+	.	transcript_id "Ledus.S4G170300.t1"; gene_id "Ledus.S4G170300"
Ledus.S4	AUGUSTUS	intron	12828199	12828275	.	+	.	transcript_id "Ledus.S4G170300.t1"; gene_id "Ledus.S4G170300"
Ledus.S4	AUGUSTUS	CDS	12828276	12829842	1	+	1	transcript_id "Ledus.S4G170300.t1"; gene_id "Ledus.S4G170300"
Ledus.S4	AUGUSTUS	exon	12828276	12829842	.	+	.	transcript_id "Ledus.S4G170300.t1"; gene_id "Ledus.S4G170300"
Ledus.S4	AUGUSTUS	stop_codon	12829843	12829845	.	+	0	transcript_id "Ledus.S4G170300.t1"; gene_id "Ledus.S4G170300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12664.t1 is derived from g6286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13699497	13699957	.	-	.	Ledus.S4G182000
Ledus.S4	AUGUSTUS	transcript	13699497	13699957	.	-	.	transcript_id "Ledus.S4G182000.t1"; gene_id "Ledus.S4G182000"
Ledus.S4	AUGUSTUS	stop_codon	13699494	13699496	.	-	0	transcript_id "Ledus.S4G182000.t1"; gene_id "Ledus.S4G182000"
Ledus.S4	AUGUSTUS	CDS	13699497	13699660	0.94	-	2	transcript_id "Ledus.S4G182000.t1"; gene_id "Ledus.S4G182000"
Ledus.S4	AUGUSTUS	exon	13699497	13699660	.	-	.	transcript_id "Ledus.S4G182000.t1"; gene_id "Ledus.S4G182000"
Ledus.S4	AUGUSTUS	intron	13699661	13699755	.	-	.	transcript_id "Ledus.S4G182000.t1"; gene_id "Ledus.S4G182000"
Ledus.S4	AUGUSTUS	CDS	13699756	13699957	0.87	-	0	transcript_id "Ledus.S4G182000.t1"; gene_id "Ledus.S4G182000"
Ledus.S4	AUGUSTUS	exon	13699756	13699957	.	-	.	transcript_id "Ledus.S4G182000.t1"; gene_id "Ledus.S4G182000"
Ledus.S4	AUGUSTUS	start_codon	13699955	13699957	.	-	0	transcript_id "Ledus.S4G182000.t1"; gene_id "Ledus.S4G182000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11529.t1 is derived from g5147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5133828	5137003	.	-	.	Ledus.S4G068500
Ledus.S4	AUGUSTUS	transcript	5133828	5137003	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	stop_codon	5133825	5133827	.	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5133828	5134004	0.97	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5133828	5134004	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5134005	5134086	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5134087	5134232	1	-	2	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5134087	5134232	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5134233	5134314	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5134315	5134403	1	-	1	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5134315	5134403	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5134404	5134483	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5134484	5134617	1	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5134484	5134617	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5134618	5134949	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5134950	5135033	1	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5134950	5135033	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5135034	5135121	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5135122	5135157	1	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5135122	5135157	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5135158	5135238	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5135239	5135316	1	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5135239	5135316	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5135317	5135410	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5135411	5135457	1	-	2	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5135411	5135457	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5135458	5135750	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5135751	5135823	1	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5135751	5135823	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5135824	5135932	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5135933	5136040	0.68	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5135933	5136040	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5136041	5136141	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5136142	5136201	0.68	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5136142	5136201	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5136202	5136290	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5136291	5136401	1	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5136291	5136401	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5136402	5136476	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5136477	5136540	1	-	1	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5136477	5136540	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5136541	5136620	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5136621	5136733	1	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5136621	5136733	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	intron	5136734	5136805	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	CDS	5136806	5137003	0.52	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	exon	5136806	5137003	.	-	.	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
Ledus.S4	AUGUSTUS	start_codon	5137001	5137003	.	-	0	transcript_id "Ledus.S4G068500.t1"; gene_id "Ledus.S4G068500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6059.t1 is derived from g3502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28785662	28786909	.	+	.	Ledus.S1G348000
Ledus.S1	AUGUSTUS	transcript	28785662	28786909	.	+	.	transcript_id "Ledus.S1G348000.t1"; gene_id "Ledus.S1G348000"
Ledus.S1	AUGUSTUS	start_codon	28785662	28785664	.	+	0	transcript_id "Ledus.S1G348000.t1"; gene_id "Ledus.S1G348000"
Ledus.S1	AUGUSTUS	CDS	28785662	28786909	0.8	+	0	transcript_id "Ledus.S1G348000.t1"; gene_id "Ledus.S1G348000"
Ledus.S1	AUGUSTUS	exon	28785662	28786909	.	+	.	transcript_id "Ledus.S1G348000.t1"; gene_id "Ledus.S1G348000"
Ledus.S1	AUGUSTUS	stop_codon	28786910	28786912	.	+	0	transcript_id "Ledus.S1G348000.t1"; gene_id "Ledus.S1G348000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10952.t1 is derived from g4570.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	852933	855788	.	+	.	Ledus.S4G010800
Ledus.S4	AUGUSTUS	transcript	852933	854502	.	+	.	transcript_id "Ledus.S4G010800.t1"; gene_id "Ledus.S4G010800"
Ledus.S4	AUGUSTUS	start_codon	852933	852935	.	+	0	transcript_id "Ledus.S4G010800.t1"; gene_id "Ledus.S4G010800"
Ledus.S4	AUGUSTUS	CDS	852933	854420	0.61	+	0	transcript_id "Ledus.S4G010800.t1"; gene_id "Ledus.S4G010800"
Ledus.S4	AUGUSTUS	exon	852933	854420	.	+	.	transcript_id "Ledus.S4G010800.t1"; gene_id "Ledus.S4G010800"
Ledus.S4	AUGUSTUS	intron	854421	854484	.	+	.	transcript_id "Ledus.S4G010800.t1"; gene_id "Ledus.S4G010800"
Ledus.S4	AUGUSTUS	CDS	854485	854502	0.98	+	0	transcript_id "Ledus.S4G010800.t1"; gene_id "Ledus.S4G010800"
Ledus.S4	AUGUSTUS	exon	854485	854502	.	+	.	transcript_id "Ledus.S4G010800.t1"; gene_id "Ledus.S4G010800"
Ledus.S4	AUGUSTUS	stop_codon	854503	854505	.	+	0	transcript_id "Ledus.S4G010800.t1"; gene_id "Ledus.S4G010800"
Ledus.S4	AUGUSTUS	transcript	852933	855788	.	+	.	transcript_id "Ledus.S4G010800.t2"; gene_id "Ledus.S4G010800"
Ledus.S4	AUGUSTUS	start_codon	852933	852935	.	+	0	transcript_id "Ledus.S4G010800.t2"; gene_id "Ledus.S4G010800"
Ledus.S4	AUGUSTUS	CDS	852933	855788	1	+	0	transcript_id "Ledus.S4G010800.t2"; gene_id "Ledus.S4G010800"
Ledus.S4	AUGUSTUS	exon	852933	855788	.	+	.	transcript_id "Ledus.S4G010800.t2"; gene_id "Ledus.S4G010800"
Ledus.S4	AUGUSTUS	stop_codon	855789	855791	.	+	0	transcript_id "Ledus.S4G010800.t2"; gene_id "Ledus.S4G010800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12260.t1 is derived from g5880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10690030	10691316	.	+	.	Ledus.S4G141600
Ledus.S4	AUGUSTUS	transcript	10690030	10691316	.	+	.	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	start_codon	10690030	10690032	.	+	0	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	CDS	10690030	10690211	0.34	+	0	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	exon	10690030	10690211	.	+	.	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	intron	10690212	10690431	.	+	.	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	CDS	10690432	10690680	0.23	+	1	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	exon	10690432	10690680	.	+	.	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	intron	10690681	10690759	.	+	.	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	CDS	10690760	10691064	0.35	+	1	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	exon	10690760	10691064	.	+	.	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	intron	10691065	10691203	.	+	.	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	CDS	10691204	10691316	0.37	+	2	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	exon	10691204	10691316	.	+	.	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
Ledus.S4	AUGUSTUS	stop_codon	10691317	10691319	.	+	0	transcript_id "Ledus.S4G141600.t1"; gene_id "Ledus.S4G141600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9165.t1 is derived from g10195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5194401	5194709	.	-	.	Ledus.S3G064200
Ledus.S3	AUGUSTUS	transcript	5194401	5194709	.	-	.	transcript_id "Ledus.S3G064200.t1"; gene_id "Ledus.S3G064200"
Ledus.S3	AUGUSTUS	stop_codon	5194398	5194400	.	-	0	transcript_id "Ledus.S3G064200.t1"; gene_id "Ledus.S3G064200"
Ledus.S3	AUGUSTUS	CDS	5194401	5194709	0.93	-	0	transcript_id "Ledus.S3G064200.t1"; gene_id "Ledus.S3G064200"
Ledus.S3	AUGUSTUS	exon	5194401	5194709	.	-	.	transcript_id "Ledus.S3G064200.t1"; gene_id "Ledus.S3G064200"
Ledus.S3	AUGUSTUS	start_codon	5194707	5194709	.	-	0	transcript_id "Ledus.S3G064200.t1"; gene_id "Ledus.S3G064200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10676.t1 is derived from g11706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17047504	17050395	.	+	.	Ledus.S3G215300
Ledus.S3	AUGUSTUS	transcript	17047504	17050395	.	+	.	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	start_codon	17047504	17047506	.	+	0	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	CDS	17047504	17048480	0.69	+	0	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	exon	17047504	17048480	.	+	.	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	intron	17048481	17048628	.	+	.	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	CDS	17048629	17048804	1	+	1	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	exon	17048629	17048804	.	+	.	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	intron	17048805	17048894	.	+	.	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	CDS	17048895	17049335	0.99	+	2	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	exon	17048895	17049335	.	+	.	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	intron	17049336	17049474	.	+	.	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	CDS	17049475	17049712	0.98	+	2	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	exon	17049475	17049712	.	+	.	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	intron	17049713	17049833	.	+	.	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	CDS	17049834	17050159	0.65	+	1	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	exon	17049834	17050159	.	+	.	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	intron	17050160	17050309	.	+	.	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	CDS	17050310	17050395	0.54	+	2	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	exon	17050310	17050395	.	+	.	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
Ledus.S3	AUGUSTUS	stop_codon	17050396	17050398	.	+	0	transcript_id "Ledus.S3G215300.t1"; gene_id "Ledus.S3G215300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8923.t1 is derived from g9953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3164285	3165752	.	+	.	Ledus.S3G040000
Ledus.S3	AUGUSTUS	transcript	3164285	3165752	.	+	.	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	start_codon	3164285	3164287	.	+	0	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	CDS	3164285	3164576	0.57	+	0	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	exon	3164285	3164576	.	+	.	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	intron	3164577	3164647	.	+	.	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	CDS	3164648	3164733	1	+	2	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	exon	3164648	3164733	.	+	.	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	intron	3164734	3164811	.	+	.	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	CDS	3164812	3164967	1	+	0	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	exon	3164812	3164967	.	+	.	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	intron	3164968	3165040	.	+	.	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	CDS	3165041	3165196	0.59	+	0	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	exon	3165041	3165196	.	+	.	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	intron	3165197	3165294	.	+	.	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	CDS	3165295	3165314	1	+	0	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	exon	3165295	3165314	.	+	.	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	intron	3165315	3165706	.	+	.	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	CDS	3165707	3165752	1	+	1	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	exon	3165707	3165752	.	+	.	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
Ledus.S3	AUGUSTUS	stop_codon	3165753	3165755	.	+	0	transcript_id "Ledus.S3G040000.t1"; gene_id "Ledus.S3G040000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12846.t1 is derived from g11880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	143602	149610	.	+	.	Ledus.C11G001000
Ledus.C11	AUGUSTUS	transcript	143602	149610	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	start_codon	143602	143604	.	+	0	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	143602	143896	0.91	+	0	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	143602	143896	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	143897	144067	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	144068	144242	1	+	2	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	144068	144242	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	144243	144378	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	144379	144553	1	+	1	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	144379	144553	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	144554	144761	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	144762	144894	1	+	0	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	144762	144894	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	144895	145090	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	145091	145161	0.69	+	2	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	145091	145161	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	145162	145265	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	145266	145349	0.71	+	0	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	145266	145349	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	145350	145483	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	145484	145574	1	+	0	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	145484	145574	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	145575	145700	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	145701	146221	1	+	2	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	145701	146221	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	146222	146442	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	146443	146607	1	+	0	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	146443	146607	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	146608	146797	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	146798	147016	1	+	0	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	146798	147016	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	147017	147156	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	147157	147284	1	+	0	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	147157	147284	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	147285	147470	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	147471	147660	1	+	1	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	147471	147660	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	147661	147738	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	147739	147822	1	+	0	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	147739	147822	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	147823	147958	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	147959	148056	1	+	0	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	147959	148056	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	148057	148328	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	148329	148590	1	+	1	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	148329	148590	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	148591	148733	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	148734	148896	0.88	+	0	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	148734	148896	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	148897	148998	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	148999	149179	0.83	+	2	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	148999	149179	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	149180	149269	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	149270	149341	1	+	1	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	149270	149341	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	intron	149342	149471	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	CDS	149472	149610	1	+	1	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	exon	149472	149610	.	+	.	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
Ledus.C11	AUGUSTUS	stop_codon	149611	149613	.	+	0	transcript_id "Ledus.C11G001000.t1"; gene_id "Ledus.C11G001000"
# This transcript jg10256.t2 is derived from g11286.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10257.t1 is derived from g11287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13848195	13855194	.	+	.	Ledus.S3G173400
Ledus.S3	AUGUSTUS	transcript	13848195	13855194	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	start_codon	13848195	13848197	.	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13848195	13848416	0.62	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13848195	13848416	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13848417	13848545	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13848546	13849283	0.99	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13848546	13849283	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13849284	13849366	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13849367	13849571	0.86	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13849367	13849571	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13849572	13849664	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13849665	13849762	0.84	+	2	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13849665	13849762	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13849763	13849863	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13849864	13850022	1	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13849864	13850022	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13850023	13850109	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13850110	13850178	1	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13850110	13850178	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13850179	13850311	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13850312	13850434	1	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13850312	13850434	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13850435	13850546	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13850547	13850696	0.29	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13850547	13850696	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13850697	13850815	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13850816	13850947	0.99	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13850816	13850947	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13850948	13851155	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13851156	13851235	1	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13851156	13851235	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13851236	13851381	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13851382	13851476	1	+	1	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13851382	13851476	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13851477	13851607	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13851608	13851675	1	+	2	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13851608	13851675	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13851676	13851787	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13851788	13851889	0.98	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13851788	13851889	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13851890	13852042	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13852043	13852113	1	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13852043	13852113	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13852114	13852260	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13852261	13852368	1	+	1	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13852261	13852368	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13852369	13852515	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13852516	13852591	1	+	1	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13852516	13852591	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13852592	13852703	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13852704	13852840	1	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13852704	13852840	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13852841	13852932	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13852933	13853092	1	+	1	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13852933	13853092	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13853093	13853172	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13853173	13853352	0.85	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13853173	13853352	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13853353	13853469	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13853470	13853586	0.84	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13853470	13853586	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13853587	13853688	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13853689	13853844	0.9	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13853689	13853844	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13853845	13853968	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13853969	13854136	1	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13853969	13854136	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13854137	13854236	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13854237	13854349	1	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13854237	13854349	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13854350	13854443	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13854444	13854567	1	+	1	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13854444	13854567	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13854568	13854736	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13854737	13854832	1	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13854737	13854832	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13854833	13854926	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13854927	13854989	1	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13854927	13854989	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	intron	13854990	13855116	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	CDS	13855117	13855194	1	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	exon	13855117	13855194	.	+	.	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
Ledus.S3	AUGUSTUS	stop_codon	13855195	13855197	.	+	0	transcript_id "Ledus.S3G173400.t1"; gene_id "Ledus.S3G173400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5935.t1 is derived from g3378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27905394	27908196	.	+	.	Ledus.S1G335600
Ledus.S1	AUGUSTUS	transcript	27905394	27908196	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	start_codon	27905394	27905396	.	+	0	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	CDS	27905394	27905554	0.4	+	0	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	exon	27905394	27905554	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	intron	27905555	27906660	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	CDS	27906661	27906940	1	+	1	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	exon	27906661	27906940	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	intron	27906941	27907072	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	CDS	27907073	27907162	1	+	0	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	exon	27907073	27907162	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	intron	27907163	27907296	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	CDS	27907297	27907365	1	+	0	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	exon	27907297	27907365	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	intron	27907366	27907484	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	CDS	27907485	27907562	1	+	0	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	exon	27907485	27907562	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	intron	27907563	27907728	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	CDS	27907729	27907794	1	+	0	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	exon	27907729	27907794	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	intron	27907795	27907886	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	CDS	27907887	27907967	1	+	0	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	exon	27907887	27907967	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	intron	27907968	27908091	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	CDS	27908092	27908196	0.83	+	0	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	exon	27908092	27908196	.	+	.	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
Ledus.S1	AUGUSTUS	stop_codon	27908197	27908199	.	+	0	transcript_id "Ledus.S1G335600.t1"; gene_id "Ledus.S1G335600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6812.t1 is derived from g4256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34406674	34408041	.	-	.	Ledus.S1G423300
Ledus.S1	AUGUSTUS	transcript	34406674	34408041	.	-	.	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	stop_codon	34406671	34406673	.	-	0	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	CDS	34406674	34406799	1	-	0	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	exon	34406674	34406799	.	-	.	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	intron	34406800	34406926	.	-	.	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	CDS	34406927	34407055	1	-	0	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	exon	34406927	34407055	.	-	.	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	intron	34407056	34407167	.	-	.	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	CDS	34407168	34407467	1	-	0	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	exon	34407168	34407467	.	-	.	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	intron	34407468	34407546	.	-	.	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	CDS	34407547	34407778	1	-	1	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	exon	34407547	34407778	.	-	.	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	intron	34407779	34407859	.	-	.	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	CDS	34407860	34408041	0.95	-	0	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	exon	34407860	34408041	.	-	.	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
Ledus.S1	AUGUSTUS	start_codon	34408039	34408041	.	-	0	transcript_id "Ledus.S1G423300.t1"; gene_id "Ledus.S1G423300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11287.t1 is derived from g4905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3378142	3379077	.	+	.	Ledus.S4G044300
Ledus.S4	AUGUSTUS	transcript	3378142	3379077	.	+	.	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	start_codon	3378142	3378144	.	+	0	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	CDS	3378142	3378441	0.28	+	0	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	exon	3378142	3378441	.	+	.	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	intron	3378442	3378583	.	+	.	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	CDS	3378584	3378610	0.39	+	0	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	exon	3378584	3378610	.	+	.	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	intron	3378611	3378689	.	+	.	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	CDS	3378690	3378728	0.54	+	0	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	exon	3378690	3378728	.	+	.	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	intron	3378729	3379017	.	+	.	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	CDS	3379018	3379077	0.95	+	0	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	exon	3379018	3379077	.	+	.	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
Ledus.S4	AUGUSTUS	stop_codon	3379078	3379080	.	+	0	transcript_id "Ledus.S4G044300.t1"; gene_id "Ledus.S4G044300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2624.t1 is derived from g57.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	627201	628214	.	-	.	Ledus.S1G004500
Ledus.S1	AUGUSTUS	transcript	627201	628214	.	-	.	transcript_id "Ledus.S1G004500.t1"; gene_id "Ledus.S1G004500"
Ledus.S1	AUGUSTUS	stop_codon	627198	627200	.	-	0	transcript_id "Ledus.S1G004500.t1"; gene_id "Ledus.S1G004500"
Ledus.S1	AUGUSTUS	CDS	627201	628214	0.62	-	0	transcript_id "Ledus.S1G004500.t1"; gene_id "Ledus.S1G004500"
Ledus.S1	AUGUSTUS	exon	627201	628214	.	-	.	transcript_id "Ledus.S1G004500.t1"; gene_id "Ledus.S1G004500"
Ledus.S1	AUGUSTUS	start_codon	628212	628214	.	-	0	transcript_id "Ledus.S1G004500.t1"; gene_id "Ledus.S1G004500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11839.t1 is derived from g5458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7213013	7213216	.	-	.	Ledus.S4G099500
Ledus.S4	AUGUSTUS	transcript	7213013	7213216	.	-	.	transcript_id "Ledus.S4G099500.t1"; gene_id "Ledus.S4G099500"
Ledus.S4	AUGUSTUS	stop_codon	7213010	7213012	.	-	0	transcript_id "Ledus.S4G099500.t1"; gene_id "Ledus.S4G099500"
Ledus.S4	AUGUSTUS	CDS	7213013	7213216	0.84	-	0	transcript_id "Ledus.S4G099500.t1"; gene_id "Ledus.S4G099500"
Ledus.S4	AUGUSTUS	exon	7213013	7213216	.	-	.	transcript_id "Ledus.S4G099500.t1"; gene_id "Ledus.S4G099500"
Ledus.S4	AUGUSTUS	start_codon	7213214	7213216	.	-	0	transcript_id "Ledus.S4G099500.t1"; gene_id "Ledus.S4G099500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1730.t1 is derived from g8591.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12202808	12204759	.	-	.	Ledus.S2G161200
Ledus.S2	AUGUSTUS	transcript	12202808	12204759	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	stop_codon	12202805	12202807	.	-	0	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	CDS	12202808	12202951	1	-	0	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	exon	12202808	12202951	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	intron	12202952	12203035	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	CDS	12203036	12203266	1	-	0	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	exon	12203036	12203266	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	intron	12203267	12203356	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	CDS	12203357	12203816	0.49	-	1	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	exon	12203357	12203816	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	intron	12203817	12203941	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	CDS	12203942	12204060	0.48	-	0	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	exon	12203942	12204060	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	intron	12204061	12204140	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	CDS	12204141	12204235	0.96	-	2	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	exon	12204141	12204235	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	intron	12204236	12204312	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	CDS	12204313	12204511	0.98	-	0	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	exon	12204313	12204511	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	intron	12204512	12204588	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	CDS	12204589	12204759	0.89	-	0	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	exon	12204589	12204759	.	-	.	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
Ledus.S2	AUGUSTUS	start_codon	12204757	12204759	.	-	0	transcript_id "Ledus.S2G161200.t1"; gene_id "Ledus.S2G161200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6065.t1 is derived from g3508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28804846	28805127	.	+	.	Ledus.S1G348600
Ledus.S1	AUGUSTUS	transcript	28804846	28805127	.	+	.	transcript_id "Ledus.S1G348600.t1"; gene_id "Ledus.S1G348600"
Ledus.S1	AUGUSTUS	start_codon	28804846	28804848	.	+	0	transcript_id "Ledus.S1G348600.t1"; gene_id "Ledus.S1G348600"
Ledus.S1	AUGUSTUS	CDS	28804846	28805127	0.4	+	0	transcript_id "Ledus.S1G348600.t1"; gene_id "Ledus.S1G348600"
Ledus.S1	AUGUSTUS	exon	28804846	28805127	.	+	.	transcript_id "Ledus.S1G348600.t1"; gene_id "Ledus.S1G348600"
Ledus.S1	AUGUSTUS	stop_codon	28805128	28805130	.	+	0	transcript_id "Ledus.S1G348600.t1"; gene_id "Ledus.S1G348600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12780.t1 is derived from g6402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14448751	14450067	.	+	.	Ledus.S4G193600
Ledus.S4	AUGUSTUS	transcript	14449336	14450067	.	+	.	transcript_id "Ledus.S4G193600.t1"; gene_id "Ledus.S4G193600"
Ledus.S4	AUGUSTUS	start_codon	14449336	14449338	.	+	0	transcript_id "Ledus.S4G193600.t1"; gene_id "Ledus.S4G193600"
Ledus.S4	AUGUSTUS	CDS	14449336	14450067	0.87	+	0	transcript_id "Ledus.S4G193600.t1"; gene_id "Ledus.S4G193600"
Ledus.S4	AUGUSTUS	exon	14449336	14450067	.	+	.	transcript_id "Ledus.S4G193600.t1"; gene_id "Ledus.S4G193600"
Ledus.S4	AUGUSTUS	stop_codon	14450068	14450070	.	+	0	transcript_id "Ledus.S4G193600.t1"; gene_id "Ledus.S4G193600"
Ledus.S4	AUGUSTUS	transcript	14448751	14450067	.	+	.	transcript_id "Ledus.S4G193600.t2"; gene_id "Ledus.S4G193600"
Ledus.S4	AUGUSTUS	start_codon	14448751	14448753	.	+	0	transcript_id "Ledus.S4G193600.t2"; gene_id "Ledus.S4G193600"
Ledus.S4	AUGUSTUS	CDS	14448751	14450067	0.7	+	0	transcript_id "Ledus.S4G193600.t2"; gene_id "Ledus.S4G193600"
Ledus.S4	AUGUSTUS	exon	14448751	14450067	.	+	.	transcript_id "Ledus.S4G193600.t2"; gene_id "Ledus.S4G193600"
Ledus.S4	AUGUSTUS	stop_codon	14450068	14450070	.	+	0	transcript_id "Ledus.S4G193600.t2"; gene_id "Ledus.S4G193600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5285.t1 is derived from g2724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22853142	22855853	.	+	.	Ledus.S1G270600
Ledus.S1	AUGUSTUS	transcript	22853154	22855853	.	+	.	transcript_id "Ledus.S1G270600.t1"; gene_id "Ledus.S1G270600"
Ledus.S1	AUGUSTUS	start_codon	22853154	22853156	.	+	0	transcript_id "Ledus.S1G270600.t1"; gene_id "Ledus.S1G270600"
Ledus.S1	AUGUSTUS	CDS	22853154	22855853	0.95	+	0	transcript_id "Ledus.S1G270600.t1"; gene_id "Ledus.S1G270600"
Ledus.S1	AUGUSTUS	exon	22853154	22855853	.	+	.	transcript_id "Ledus.S1G270600.t1"; gene_id "Ledus.S1G270600"
Ledus.S1	AUGUSTUS	stop_codon	22855854	22855856	.	+	0	transcript_id "Ledus.S1G270600.t1"; gene_id "Ledus.S1G270600"
Ledus.S1	AUGUSTUS	transcript	22853142	22855853	.	+	.	transcript_id "Ledus.S1G270600.t2"; gene_id "Ledus.S1G270600"
Ledus.S1	AUGUSTUS	start_codon	22853142	22853144	.	+	0	transcript_id "Ledus.S1G270600.t2"; gene_id "Ledus.S1G270600"
Ledus.S1	AUGUSTUS	CDS	22853142	22855853	0.5	+	0	transcript_id "Ledus.S1G270600.t2"; gene_id "Ledus.S1G270600"
Ledus.S1	AUGUSTUS	exon	22853142	22855853	.	+	.	transcript_id "Ledus.S1G270600.t2"; gene_id "Ledus.S1G270600"
Ledus.S1	AUGUSTUS	stop_codon	22855854	22855856	.	+	0	transcript_id "Ledus.S1G270600.t2"; gene_id "Ledus.S1G270600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5334.t1 is derived from g2773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23415755	23416813	.	-	.	Ledus.S1G275500
Ledus.S1	AUGUSTUS	transcript	23415755	23416813	.	-	.	transcript_id "Ledus.S1G275500.t1"; gene_id "Ledus.S1G275500"
Ledus.S1	AUGUSTUS	stop_codon	23415752	23415754	.	-	0	transcript_id "Ledus.S1G275500.t1"; gene_id "Ledus.S1G275500"
Ledus.S1	AUGUSTUS	CDS	23415755	23416813	1	-	0	transcript_id "Ledus.S1G275500.t1"; gene_id "Ledus.S1G275500"
Ledus.S1	AUGUSTUS	exon	23415755	23416813	.	-	.	transcript_id "Ledus.S1G275500.t1"; gene_id "Ledus.S1G275500"
Ledus.S1	AUGUSTUS	start_codon	23416811	23416813	.	-	0	transcript_id "Ledus.S1G275500.t1"; gene_id "Ledus.S1G275500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6744.t1 is derived from g4187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33707614	33708767	.	-	.	Ledus.S1G416500
Ledus.S1	AUGUSTUS	transcript	33707614	33708767	.	-	.	transcript_id "Ledus.S1G416500.t1"; gene_id "Ledus.S1G416500"
Ledus.S1	AUGUSTUS	stop_codon	33707611	33707613	.	-	0	transcript_id "Ledus.S1G416500.t1"; gene_id "Ledus.S1G416500"
Ledus.S1	AUGUSTUS	CDS	33707614	33707646	0.9	-	0	transcript_id "Ledus.S1G416500.t1"; gene_id "Ledus.S1G416500"
Ledus.S1	AUGUSTUS	exon	33707614	33707646	.	-	.	transcript_id "Ledus.S1G416500.t1"; gene_id "Ledus.S1G416500"
Ledus.S1	AUGUSTUS	intron	33707647	33707887	.	-	.	transcript_id "Ledus.S1G416500.t1"; gene_id "Ledus.S1G416500"
Ledus.S1	AUGUSTUS	CDS	33707888	33708498	0.38	-	2	transcript_id "Ledus.S1G416500.t1"; gene_id "Ledus.S1G416500"
Ledus.S1	AUGUSTUS	exon	33707888	33708498	.	-	.	transcript_id "Ledus.S1G416500.t1"; gene_id "Ledus.S1G416500"
Ledus.S1	AUGUSTUS	intron	33708499	33708682	.	-	.	transcript_id "Ledus.S1G416500.t1"; gene_id "Ledus.S1G416500"
Ledus.S1	AUGUSTUS	CDS	33708683	33708767	0.86	-	0	transcript_id "Ledus.S1G416500.t1"; gene_id "Ledus.S1G416500"
Ledus.S1	AUGUSTUS	exon	33708683	33708767	.	-	.	transcript_id "Ledus.S1G416500.t1"; gene_id "Ledus.S1G416500"
Ledus.S1	AUGUSTUS	start_codon	33708765	33708767	.	-	0	transcript_id "Ledus.S1G416500.t1"; gene_id "Ledus.S1G416500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2516.t1 is derived from g9379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18551666	18552757	.	+	.	Ledus.S2G239800
Ledus.S2	AUGUSTUS	transcript	18551666	18552757	.	+	.	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	start_codon	18551666	18551668	.	+	0	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	CDS	18551666	18551773	0.77	+	0	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	exon	18551666	18551773	.	+	.	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	intron	18551774	18551870	.	+	.	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	CDS	18551871	18551979	1	+	0	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	exon	18551871	18551979	.	+	.	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	intron	18551980	18552243	.	+	.	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	CDS	18552244	18552347	0.65	+	2	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	exon	18552244	18552347	.	+	.	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	intron	18552348	18552459	.	+	.	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	CDS	18552460	18552558	0.98	+	0	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	exon	18552460	18552558	.	+	.	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	intron	18552559	18552631	.	+	.	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	CDS	18552632	18552757	1	+	0	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	exon	18552632	18552757	.	+	.	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
Ledus.S2	AUGUSTUS	stop_codon	18552758	18552760	.	+	0	transcript_id "Ledus.S2G239800.t1"; gene_id "Ledus.S2G239800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11904.t1 is derived from g5523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7666124	7666465	.	+	.	Ledus.S4G106000
Ledus.S4	AUGUSTUS	transcript	7666124	7666465	.	+	.	transcript_id "Ledus.S4G106000.t1"; gene_id "Ledus.S4G106000"
Ledus.S4	AUGUSTUS	start_codon	7666124	7666126	.	+	0	transcript_id "Ledus.S4G106000.t1"; gene_id "Ledus.S4G106000"
Ledus.S4	AUGUSTUS	CDS	7666124	7666465	0.65	+	0	transcript_id "Ledus.S4G106000.t1"; gene_id "Ledus.S4G106000"
Ledus.S4	AUGUSTUS	exon	7666124	7666465	.	+	.	transcript_id "Ledus.S4G106000.t1"; gene_id "Ledus.S4G106000"
Ledus.S4	AUGUSTUS	stop_codon	7666466	7666468	.	+	0	transcript_id "Ledus.S4G106000.t1"; gene_id "Ledus.S4G106000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3316.t1 is derived from g751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7441353	7442357	.	-	.	Ledus.S1G073700
Ledus.S1	AUGUSTUS	transcript	7441353	7442357	.	-	.	transcript_id "Ledus.S1G073700.t1"; gene_id "Ledus.S1G073700"
Ledus.S1	AUGUSTUS	stop_codon	7441350	7441352	.	-	0	transcript_id "Ledus.S1G073700.t1"; gene_id "Ledus.S1G073700"
Ledus.S1	AUGUSTUS	CDS	7441353	7442357	1	-	0	transcript_id "Ledus.S1G073700.t1"; gene_id "Ledus.S1G073700"
Ledus.S1	AUGUSTUS	exon	7441353	7442357	.	-	.	transcript_id "Ledus.S1G073700.t1"; gene_id "Ledus.S1G073700"
Ledus.S1	AUGUSTUS	start_codon	7442355	7442357	.	-	0	transcript_id "Ledus.S1G073700.t1"; gene_id "Ledus.S1G073700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9264.t1 is derived from g10294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5664968	5666128	.	-	.	Ledus.S3G074100
Ledus.S3	AUGUSTUS	transcript	5664968	5666128	.	-	.	transcript_id "Ledus.S3G074100.t1"; gene_id "Ledus.S3G074100"
Ledus.S3	AUGUSTUS	stop_codon	5664965	5664967	.	-	0	transcript_id "Ledus.S3G074100.t1"; gene_id "Ledus.S3G074100"
Ledus.S3	AUGUSTUS	CDS	5664968	5666128	1	-	0	transcript_id "Ledus.S3G074100.t1"; gene_id "Ledus.S3G074100"
Ledus.S3	AUGUSTUS	exon	5664968	5666128	.	-	.	transcript_id "Ledus.S3G074100.t1"; gene_id "Ledus.S3G074100"
Ledus.S3	AUGUSTUS	start_codon	5666126	5666128	.	-	0	transcript_id "Ledus.S3G074100.t1"; gene_id "Ledus.S3G074100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10984.t1 is derived from g4602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	999098	1003986	.	+	.	Ledus.S4G014000
Ledus.S4	AUGUSTUS	transcript	999098	1003986	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	start_codon	999098	999100	.	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	999098	999277	0.99	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	999098	999277	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	999278	999397	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	999398	999541	1	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	999398	999541	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	999542	999637	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	999638	999745	1	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	999638	999745	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	999746	999847	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	999848	999943	0.97	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	999848	999943	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	999944	1000046	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1000047	1000180	1	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1000047	1000180	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1000181	1000327	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1000328	1000388	1	+	1	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1000328	1000388	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1000389	1000606	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1000607	1000773	1	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1000607	1000773	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1000774	1000860	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1000861	1000966	1	+	1	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1000861	1000966	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1000967	1001108	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1001109	1001186	1	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1001109	1001186	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1001187	1001281	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1001282	1001343	1	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1001282	1001343	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1001344	1001427	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1001428	1001500	1	+	1	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1001428	1001500	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1001501	1001660	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1001661	1001726	1	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1001661	1001726	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1001727	1001832	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1001833	1001976	0.99	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1001833	1001976	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1001977	1002082	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1002083	1002143	1	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1002083	1002143	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1002144	1002238	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1002239	1002346	1	+	2	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1002239	1002346	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1002347	1002444	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1002445	1002499	1	+	2	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1002445	1002499	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1002500	1002612	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1002613	1002781	1	+	1	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1002613	1002781	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1002782	1002860	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1002861	1002925	1	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1002861	1002925	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1002926	1003068	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1003069	1003159	1	+	1	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1003069	1003159	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1003160	1003284	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1003285	1003368	1	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1003285	1003368	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1003369	1003502	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1003503	1003595	1	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1003503	1003595	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1003596	1003765	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1003766	1003791	1	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1003766	1003791	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	intron	1003792	1003889	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	CDS	1003890	1003986	1	+	1	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	exon	1003890	1003986	.	+	.	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
Ledus.S4	AUGUSTUS	stop_codon	1003987	1003989	.	+	0	transcript_id "Ledus.S4G014000.t1"; gene_id "Ledus.S4G014000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6313.t1 is derived from g3756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30446733	30447266	.	+	.	Ledus.S1G373400
Ledus.S1	AUGUSTUS	transcript	30446733	30447266	.	+	.	transcript_id "Ledus.S1G373400.t1"; gene_id "Ledus.S1G373400"
Ledus.S1	AUGUSTUS	start_codon	30446733	30446735	.	+	0	transcript_id "Ledus.S1G373400.t1"; gene_id "Ledus.S1G373400"
Ledus.S1	AUGUSTUS	CDS	30446733	30447038	1	+	0	transcript_id "Ledus.S1G373400.t1"; gene_id "Ledus.S1G373400"
Ledus.S1	AUGUSTUS	exon	30446733	30447038	.	+	.	transcript_id "Ledus.S1G373400.t1"; gene_id "Ledus.S1G373400"
Ledus.S1	AUGUSTUS	intron	30447039	30447164	.	+	.	transcript_id "Ledus.S1G373400.t1"; gene_id "Ledus.S1G373400"
Ledus.S1	AUGUSTUS	CDS	30447165	30447266	1	+	0	transcript_id "Ledus.S1G373400.t1"; gene_id "Ledus.S1G373400"
Ledus.S1	AUGUSTUS	exon	30447165	30447266	.	+	.	transcript_id "Ledus.S1G373400.t1"; gene_id "Ledus.S1G373400"
Ledus.S1	AUGUSTUS	stop_codon	30447267	30447269	.	+	0	transcript_id "Ledus.S1G373400.t1"; gene_id "Ledus.S1G373400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2476.t1 is derived from g9339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18366996	18370096	.	-	.	Ledus.S2G235800
Ledus.S2	AUGUSTUS	transcript	18366996	18370096	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	stop_codon	18366993	18366995	.	-	0	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18366996	18367194	0.29	-	1	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18366996	18367194	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18367195	18367280	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18367281	18367474	1	-	0	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18367281	18367474	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18367475	18367567	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18367568	18367655	1	-	1	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18367568	18367655	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18367656	18367736	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18367737	18367846	1	-	0	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18367737	18367846	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18367847	18367925	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18367926	18368027	1	-	0	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18367926	18368027	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18368028	18368115	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18368116	18368237	1	-	2	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18368116	18368237	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18368238	18368356	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18368357	18368452	1	-	2	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18368357	18368452	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18368453	18368579	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18368580	18368812	1	-	1	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18368580	18368812	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18368813	18368937	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18368938	18369143	1	-	0	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18368938	18369143	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18369144	18369235	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18369236	18369389	1	-	1	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18369236	18369389	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18369390	18369493	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18369494	18369558	1	-	0	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18369494	18369558	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18369559	18369641	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18369642	18369774	1	-	1	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18369642	18369774	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18369775	18369852	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18369853	18369911	1	-	0	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18369853	18369911	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	intron	18369912	18370003	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	CDS	18370004	18370096	1	-	0	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	exon	18370004	18370096	.	-	.	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
Ledus.S2	AUGUSTUS	start_codon	18370094	18370096	.	-	0	transcript_id "Ledus.S2G235800.t1"; gene_id "Ledus.S2G235800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7390.t1 is derived from g12061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2043954	2045830	.	-	.	Ledus.S5G016800
Ledus.S5	AUGUSTUS	transcript	2043954	2045830	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	stop_codon	2043951	2043953	.	-	0	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	CDS	2043954	2044067	1	-	0	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	exon	2043954	2044067	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	intron	2044068	2044196	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	CDS	2044197	2044356	0.99	-	1	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	exon	2044197	2044356	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	intron	2044357	2044462	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	CDS	2044463	2044552	1	-	1	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	exon	2044463	2044552	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	intron	2044553	2044688	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	CDS	2044689	2044723	1	-	0	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	exon	2044689	2044723	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	intron	2044724	2044870	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	CDS	2044871	2044951	0.95	-	0	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	exon	2044871	2044951	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	intron	2044952	2045064	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	CDS	2045065	2045121	0.87	-	0	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	exon	2045065	2045121	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	intron	2045122	2045234	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	CDS	2045235	2045339	0.96	-	0	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	exon	2045235	2045339	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	intron	2045340	2045449	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	CDS	2045450	2045616	0.84	-	2	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	exon	2045450	2045616	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	intron	2045617	2045700	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	CDS	2045701	2045830	0.61	-	0	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	exon	2045701	2045830	.	-	.	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
Ledus.S5	AUGUSTUS	start_codon	2045828	2045830	.	-	0	transcript_id "Ledus.S5G016800.t1"; gene_id "Ledus.S5G016800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4179.t1 is derived from g1615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15212565	15216209	.	-	.	Ledus.S1G160000
Ledus.S1	AUGUSTUS	transcript	15212565	15216209	.	-	.	transcript_id "Ledus.S1G160000.t1"; gene_id "Ledus.S1G160000"
Ledus.S1	AUGUSTUS	stop_codon	15212562	15212564	.	-	0	transcript_id "Ledus.S1G160000.t1"; gene_id "Ledus.S1G160000"
Ledus.S1	AUGUSTUS	CDS	15212565	15215461	0.63	-	2	transcript_id "Ledus.S1G160000.t1"; gene_id "Ledus.S1G160000"
Ledus.S1	AUGUSTUS	exon	15212565	15215461	.	-	.	transcript_id "Ledus.S1G160000.t1"; gene_id "Ledus.S1G160000"
Ledus.S1	AUGUSTUS	intron	15215462	15215600	.	-	.	transcript_id "Ledus.S1G160000.t1"; gene_id "Ledus.S1G160000"
Ledus.S1	AUGUSTUS	CDS	15215601	15215660	1	-	2	transcript_id "Ledus.S1G160000.t1"; gene_id "Ledus.S1G160000"
Ledus.S1	AUGUSTUS	exon	15215601	15215660	.	-	.	transcript_id "Ledus.S1G160000.t1"; gene_id "Ledus.S1G160000"
Ledus.S1	AUGUSTUS	intron	15215661	15215791	.	-	.	transcript_id "Ledus.S1G160000.t1"; gene_id "Ledus.S1G160000"
Ledus.S1	AUGUSTUS	CDS	15215792	15216209	0.83	-	0	transcript_id "Ledus.S1G160000.t1"; gene_id "Ledus.S1G160000"
Ledus.S1	AUGUSTUS	exon	15215792	15216209	.	-	.	transcript_id "Ledus.S1G160000.t1"; gene_id "Ledus.S1G160000"
Ledus.S1	AUGUSTUS	start_codon	15216207	15216209	.	-	0	transcript_id "Ledus.S1G160000.t1"; gene_id "Ledus.S1G160000"
# This transcript jg5644.t2 is derived from g3083.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5645.t1 is derived from g3084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25559387	25561366	.	+	.	Ledus.S1G306600
Ledus.S1	AUGUSTUS	transcript	25559387	25561366	.	+	.	transcript_id "Ledus.S1G306600.t1"; gene_id "Ledus.S1G306600"
Ledus.S1	AUGUSTUS	start_codon	25559387	25559389	.	+	0	transcript_id "Ledus.S1G306600.t1"; gene_id "Ledus.S1G306600"
Ledus.S1	AUGUSTUS	CDS	25559387	25561366	1	+	0	transcript_id "Ledus.S1G306600.t1"; gene_id "Ledus.S1G306600"
Ledus.S1	AUGUSTUS	exon	25559387	25561366	.	+	.	transcript_id "Ledus.S1G306600.t1"; gene_id "Ledus.S1G306600"
Ledus.S1	AUGUSTUS	stop_codon	25561367	25561369	.	+	0	transcript_id "Ledus.S1G306600.t1"; gene_id "Ledus.S1G306600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10361.t1 is derived from g11391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14428598	14429286	.	-	.	Ledus.S3G183800
Ledus.S3	AUGUSTUS	transcript	14428598	14429286	.	-	.	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	stop_codon	14428595	14428597	.	-	0	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	CDS	14428598	14428664	0.93	-	1	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	exon	14428598	14428664	.	-	.	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	intron	14428665	14428832	.	-	.	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	CDS	14428833	14428880	1	-	1	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	exon	14428833	14428880	.	-	.	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	intron	14428881	14429005	.	-	.	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	CDS	14429006	14429063	1	-	2	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	exon	14429006	14429063	.	-	.	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	intron	14429064	14429159	.	-	.	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	CDS	14429160	14429286	1	-	0	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	exon	14429160	14429286	.	-	.	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
Ledus.S3	AUGUSTUS	start_codon	14429284	14429286	.	-	0	transcript_id "Ledus.S3G183800.t1"; gene_id "Ledus.S3G183800"
# This transcript jg756.t2 is derived from g7617.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg757.t1 is derived from g7618.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4851516	4853805	.	-	.	Ledus.S2G063900
Ledus.S2	AUGUSTUS	transcript	4851516	4853805	.	-	.	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	stop_codon	4851513	4851515	.	-	0	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	CDS	4851516	4851737	0.98	-	0	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	exon	4851516	4851737	.	-	.	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	intron	4851738	4851881	.	-	.	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	CDS	4851882	4852354	0.62	-	2	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	exon	4851882	4852354	.	-	.	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	intron	4852355	4852589	.	-	.	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	CDS	4852590	4852619	0.74	-	2	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	exon	4852590	4852619	.	-	.	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	intron	4852620	4852750	.	-	.	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	CDS	4852751	4853061	0.61	-	1	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	exon	4852751	4853061	.	-	.	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	intron	4853062	4853410	.	-	.	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	CDS	4853411	4853805	0.82	-	0	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	exon	4853411	4853805	.	-	.	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	start_codon	4853803	4853805	.	-	0	transcript_id "Ledus.S2G063900.t1"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	transcript	4851516	4853805	.	-	.	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	stop_codon	4851513	4851515	.	-	0	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	CDS	4851516	4851737	0.98	-	0	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	exon	4851516	4851737	.	-	.	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	intron	4851738	4851881	.	-	.	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	CDS	4851882	4852351	0.61	-	2	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	exon	4851882	4852351	.	-	.	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	intron	4852352	4852589	.	-	.	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	CDS	4852590	4852619	0.76	-	2	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	exon	4852590	4852619	.	-	.	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	intron	4852620	4852750	.	-	.	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	CDS	4852751	4853061	0.55	-	1	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	exon	4852751	4853061	.	-	.	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	intron	4853062	4853410	.	-	.	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	CDS	4853411	4853805	0.88	-	0	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	exon	4853411	4853805	.	-	.	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
Ledus.S2	AUGUSTUS	start_codon	4853803	4853805	.	-	0	transcript_id "Ledus.S2G063900.t2"; gene_id "Ledus.S2G063900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12157.t1 is derived from g5776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10036959	10037861	.	-	.	Ledus.S4G131300
Ledus.S4	AUGUSTUS	transcript	10036959	10037861	.	-	.	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	stop_codon	10036956	10036958	.	-	0	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	CDS	10036959	10037050	0.99	-	2	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	exon	10036959	10037050	.	-	.	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	intron	10037051	10037135	.	-	.	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	CDS	10037136	10037222	0.52	-	2	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	exon	10037136	10037222	.	-	.	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	intron	10037223	10037301	.	-	.	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	CDS	10037302	10037515	0.87	-	0	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	exon	10037302	10037515	.	-	.	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	intron	10037516	10037621	.	-	.	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	CDS	10037622	10037861	1	-	0	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	exon	10037622	10037861	.	-	.	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
Ledus.S4	AUGUSTUS	start_codon	10037859	10037861	.	-	0	transcript_id "Ledus.S4G131300.t1"; gene_id "Ledus.S4G131300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6242.t1 is derived from g3685.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29828707	29829093	.	-	.	Ledus.S1G366300
Ledus.S1	AUGUSTUS	transcript	29828707	29829093	.	-	.	transcript_id "Ledus.S1G366300.t1"; gene_id "Ledus.S1G366300"
Ledus.S1	AUGUSTUS	stop_codon	29828704	29828706	.	-	0	transcript_id "Ledus.S1G366300.t1"; gene_id "Ledus.S1G366300"
Ledus.S1	AUGUSTUS	CDS	29828707	29829093	0.66	-	0	transcript_id "Ledus.S1G366300.t1"; gene_id "Ledus.S1G366300"
Ledus.S1	AUGUSTUS	exon	29828707	29829093	.	-	.	transcript_id "Ledus.S1G366300.t1"; gene_id "Ledus.S1G366300"
Ledus.S1	AUGUSTUS	start_codon	29829091	29829093	.	-	0	transcript_id "Ledus.S1G366300.t1"; gene_id "Ledus.S1G366300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1219.t1 is derived from g8080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8668211	8668980	.	-	.	Ledus.S2G110100
Ledus.S2	AUGUSTUS	transcript	8668211	8668980	.	-	.	transcript_id "Ledus.S2G110100.t1"; gene_id "Ledus.S2G110100"
Ledus.S2	AUGUSTUS	stop_codon	8668208	8668210	.	-	0	transcript_id "Ledus.S2G110100.t1"; gene_id "Ledus.S2G110100"
Ledus.S2	AUGUSTUS	CDS	8668211	8668837	0.65	-	0	transcript_id "Ledus.S2G110100.t1"; gene_id "Ledus.S2G110100"
Ledus.S2	AUGUSTUS	exon	8668211	8668837	.	-	.	transcript_id "Ledus.S2G110100.t1"; gene_id "Ledus.S2G110100"
Ledus.S2	AUGUSTUS	intron	8668838	8668899	.	-	.	transcript_id "Ledus.S2G110100.t1"; gene_id "Ledus.S2G110100"
Ledus.S2	AUGUSTUS	CDS	8668900	8668980	0.13	-	0	transcript_id "Ledus.S2G110100.t1"; gene_id "Ledus.S2G110100"
Ledus.S2	AUGUSTUS	exon	8668900	8668980	.	-	.	transcript_id "Ledus.S2G110100.t1"; gene_id "Ledus.S2G110100"
Ledus.S2	AUGUSTUS	start_codon	8668978	8668980	.	-	0	transcript_id "Ledus.S2G110100.t1"; gene_id "Ledus.S2G110100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7362.t1 is derived from g12033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1453199	1454857	.	-	.	Ledus.S5G014000
Ledus.S5	AUGUSTUS	transcript	1453199	1454857	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	stop_codon	1453196	1453198	.	-	0	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	CDS	1453199	1453303	0.86	-	0	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	exon	1453199	1453303	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	intron	1453304	1453380	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	CDS	1453381	1453446	1	-	0	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	exon	1453381	1453446	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	intron	1453447	1453532	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	CDS	1453533	1453610	1	-	0	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	exon	1453533	1453610	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	intron	1453611	1453694	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	CDS	1453695	1453741	1	-	2	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	exon	1453695	1453741	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	intron	1453742	1453823	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	CDS	1453824	1453929	1	-	0	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	exon	1453824	1453929	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	intron	1453930	1454024	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	CDS	1454025	1454102	1	-	0	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	exon	1454025	1454102	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	intron	1454103	1454196	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	CDS	1454197	1454313	1	-	0	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	exon	1454197	1454313	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	intron	1454314	1454458	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	CDS	1454459	1454524	1	-	0	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	exon	1454459	1454524	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	intron	1454525	1454612	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	CDS	1454613	1454666	1	-	0	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	exon	1454613	1454666	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	intron	1454667	1454758	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	CDS	1454759	1454857	1	-	0	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	exon	1454759	1454857	.	-	.	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
Ledus.S5	AUGUSTUS	start_codon	1454855	1454857	.	-	0	transcript_id "Ledus.S5G014000.t1"; gene_id "Ledus.S5G014000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg24.t1 is derived from g6453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C17	AUGUSTUS	gene	55209	55518	.	+	.	Ledus.C17G000200
Ledus.C17	AUGUSTUS	transcript	55209	55518	.	+	.	transcript_id "Ledus.C17G000200.t1"; gene_id "Ledus.C17G000200"
Ledus.C17	AUGUSTUS	start_codon	55209	55211	.	+	0	transcript_id "Ledus.C17G000200.t1"; gene_id "Ledus.C17G000200"
Ledus.C17	AUGUSTUS	CDS	55209	55410	0.47	+	0	transcript_id "Ledus.C17G000200.t1"; gene_id "Ledus.C17G000200"
Ledus.C17	AUGUSTUS	exon	55209	55410	.	+	.	transcript_id "Ledus.C17G000200.t1"; gene_id "Ledus.C17G000200"
Ledus.C17	AUGUSTUS	intron	55411	55501	.	+	.	transcript_id "Ledus.C17G000200.t1"; gene_id "Ledus.C17G000200"
Ledus.C17	AUGUSTUS	CDS	55502	55518	1	+	2	transcript_id "Ledus.C17G000200.t1"; gene_id "Ledus.C17G000200"
Ledus.C17	AUGUSTUS	exon	55502	55518	.	+	.	transcript_id "Ledus.C17G000200.t1"; gene_id "Ledus.C17G000200"
Ledus.C17	AUGUSTUS	stop_codon	55519	55521	.	+	0	transcript_id "Ledus.C17G000200.t1"; gene_id "Ledus.C17G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12896.t1 is derived from g4388.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	134511	134777	.	+	.	Ledus.C9G000400
Ledus.C9	AUGUSTUS	transcript	134511	134777	.	+	.	transcript_id "Ledus.C9G000400.t1"; gene_id "Ledus.C9G000400"
Ledus.C9	AUGUSTUS	start_codon	134511	134513	.	+	0	transcript_id "Ledus.C9G000400.t1"; gene_id "Ledus.C9G000400"
Ledus.C9	AUGUSTUS	CDS	134511	134777	0.99	+	0	transcript_id "Ledus.C9G000400.t1"; gene_id "Ledus.C9G000400"
Ledus.C9	AUGUSTUS	exon	134511	134777	.	+	.	transcript_id "Ledus.C9G000400.t1"; gene_id "Ledus.C9G000400"
Ledus.C9	AUGUSTUS	stop_codon	134778	134780	.	+	0	transcript_id "Ledus.C9G000400.t1"; gene_id "Ledus.C9G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6228.t1 is derived from g3671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29751973	29754463	.	-	.	Ledus.S1G364900
Ledus.S1	AUGUSTUS	transcript	29751973	29754187	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	stop_codon	29751970	29751972	.	-	0	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29751973	29752083	1	-	0	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29751973	29752083	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29752084	29752187	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29752188	29752247	0.99	-	0	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29752188	29752247	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29752248	29752346	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29752347	29752448	1	-	0	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29752347	29752448	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29752449	29752576	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29752577	29752626	1	-	2	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29752577	29752626	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29752627	29752915	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29752916	29752980	1	-	1	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29752916	29752980	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29752981	29753093	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29753094	29753176	0.98	-	0	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29753094	29753176	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29753177	29753362	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29753363	29753386	0.97	-	0	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29753363	29753386	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29753387	29753493	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29753494	29753552	0.96	-	2	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29753494	29753552	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29753553	29753663	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29753664	29753800	1	-	1	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29753664	29753800	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29753801	29753891	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29753892	29753953	1	-	0	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29753892	29753953	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29753954	29754175	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29754176	29754187	0.97	-	0	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29754176	29754187	.	-	.	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	start_codon	29754185	29754187	.	-	0	transcript_id "Ledus.S1G364900.t1"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	transcript	29751973	29754463	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	stop_codon	29751970	29751972	.	-	0	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29751973	29752083	1	-	0	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29751973	29752083	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29752084	29752187	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29752188	29752247	1	-	0	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29752188	29752247	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29752248	29752346	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29752347	29752448	1	-	0	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29752347	29752448	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29752449	29752576	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29752577	29752626	1	-	2	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29752577	29752626	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29752627	29752915	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29752916	29752980	1	-	1	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29752916	29752980	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29752981	29753093	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29753094	29753176	0.99	-	0	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29753094	29753176	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29753177	29753362	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29753363	29753386	0.97	-	0	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29753363	29753386	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29753387	29753493	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29753494	29753552	0.97	-	2	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29753494	29753552	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29753553	29753663	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29753664	29753800	1	-	1	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29753664	29753800	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29753801	29753891	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29753892	29753997	0.96	-	2	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29753892	29753997	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29753998	29754175	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29754176	29754193	0.87	-	2	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29754176	29754193	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29754194	29754312	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29754313	29754363	0.76	-	2	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29754313	29754363	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	intron	29754364	29754444	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	CDS	29754445	29754463	0.93	-	0	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	exon	29754445	29754463	.	-	.	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
Ledus.S1	AUGUSTUS	start_codon	29754461	29754463	.	-	0	transcript_id "Ledus.S1G364900.t2"; gene_id "Ledus.S1G364900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2916.t1 is derived from g351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4570567	4575761	.	-	.	Ledus.S1G033700
Ledus.S1	AUGUSTUS	transcript	4570567	4575761	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	stop_codon	4570564	4570566	.	-	0	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	CDS	4570567	4572222	0.64	-	0	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	exon	4570567	4572222	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	intron	4572223	4572331	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	CDS	4572332	4572573	0.34	-	2	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	exon	4572332	4572573	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	intron	4572574	4572702	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	CDS	4572703	4572772	0.42	-	0	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	exon	4572703	4572772	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	intron	4572773	4572872	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	CDS	4572873	4573159	1	-	2	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	exon	4572873	4573159	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	intron	4573160	4573238	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	CDS	4573239	4573542	1	-	0	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	exon	4573239	4573542	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	intron	4573543	4573639	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	CDS	4573640	4573881	1	-	2	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	exon	4573640	4573881	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	intron	4573882	4573955	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	CDS	4573956	4574184	1	-	0	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	exon	4573956	4574184	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	intron	4574185	4574297	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	CDS	4574298	4574462	0.99	-	0	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	exon	4574298	4574462	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	intron	4574463	4574605	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	CDS	4574606	4574932	1	-	0	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	exon	4574606	4574932	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	intron	4574933	4575128	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	CDS	4575129	4575196	1	-	2	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	exon	4575129	4575196	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	intron	4575197	4575284	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	CDS	4575285	4575471	1	-	0	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	exon	4575285	4575471	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	intron	4575472	4575569	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	CDS	4575570	4575761	0.73	-	0	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	exon	4575570	4575761	.	-	.	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
Ledus.S1	AUGUSTUS	start_codon	4575759	4575761	.	-	0	transcript_id "Ledus.S1G033700.t1"; gene_id "Ledus.S1G033700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6148.t1 is derived from g3591.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29285163	29286360	.	+	.	Ledus.S1G356900
Ledus.S1	AUGUSTUS	transcript	29285163	29286360	.	+	.	transcript_id "Ledus.S1G356900.t1"; gene_id "Ledus.S1G356900"
Ledus.S1	AUGUSTUS	start_codon	29285163	29285165	.	+	0	transcript_id "Ledus.S1G356900.t1"; gene_id "Ledus.S1G356900"
Ledus.S1	AUGUSTUS	CDS	29285163	29285403	0.61	+	0	transcript_id "Ledus.S1G356900.t1"; gene_id "Ledus.S1G356900"
Ledus.S1	AUGUSTUS	exon	29285163	29285403	.	+	.	transcript_id "Ledus.S1G356900.t1"; gene_id "Ledus.S1G356900"
Ledus.S1	AUGUSTUS	intron	29285404	29285539	.	+	.	transcript_id "Ledus.S1G356900.t1"; gene_id "Ledus.S1G356900"
Ledus.S1	AUGUSTUS	CDS	29285540	29286360	0.89	+	2	transcript_id "Ledus.S1G356900.t1"; gene_id "Ledus.S1G356900"
Ledus.S1	AUGUSTUS	exon	29285540	29286360	.	+	.	transcript_id "Ledus.S1G356900.t1"; gene_id "Ledus.S1G356900"
Ledus.S1	AUGUSTUS	stop_codon	29286361	29286363	.	+	0	transcript_id "Ledus.S1G356900.t1"; gene_id "Ledus.S1G356900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7400.t1 is derived from g12071.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2095812	2097357	.	-	.	Ledus.S5G017800
Ledus.S5	AUGUSTUS	transcript	2095812	2097357	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	stop_codon	2095809	2095811	.	-	0	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	CDS	2095812	2095985	1	-	0	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	exon	2095812	2095985	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	intron	2095986	2096071	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	CDS	2096072	2096149	0.99	-	0	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	exon	2096072	2096149	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	intron	2096150	2096263	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	CDS	2096264	2096425	0.89	-	0	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	exon	2096264	2096425	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	intron	2096426	2096548	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	CDS	2096549	2096695	0.82	-	0	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	exon	2096549	2096695	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	intron	2096696	2096800	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	CDS	2096801	2096875	0.95	-	0	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	exon	2096801	2096875	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	intron	2096876	2096983	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	CDS	2096984	2097087	0.99	-	2	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	exon	2096984	2097087	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	intron	2097088	2097167	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	CDS	2097168	2097357	0.63	-	0	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	exon	2097168	2097357	.	-	.	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
Ledus.S5	AUGUSTUS	start_codon	2097355	2097357	.	-	0	transcript_id "Ledus.S5G017800.t1"; gene_id "Ledus.S5G017800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11034.t1 is derived from g4652.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1309009	1316438	.	-	.	Ledus.S4G019000
Ledus.S4	AUGUSTUS	transcript	1309009	1316438	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	stop_codon	1309006	1309008	.	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1309009	1309272	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1309009	1309272	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1309273	1309817	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1309818	1309898	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1309818	1309898	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1309899	1310052	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1310053	1310259	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1310053	1310259	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1310260	1310373	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1310374	1310523	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1310374	1310523	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1310524	1310728	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1310729	1310785	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1310729	1310785	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1310786	1310959	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1310960	1311037	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1310960	1311037	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1311038	1311137	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1311138	1311258	1	-	1	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1311138	1311258	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1311259	1311500	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1311501	1311729	1	-	2	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1311501	1311729	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1311730	1311852	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1311853	1311971	1	-	1	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1311853	1311971	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1311972	1312182	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1312183	1312393	1	-	2	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1312183	1312393	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1312394	1312515	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1312516	1312642	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1312516	1312642	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1312643	1312762	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1312763	1312948	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1312763	1312948	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1312949	1313027	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1313028	1313222	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1313028	1313222	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1313223	1313355	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1313356	1313493	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1313356	1313493	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1313494	1313738	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1313739	1313813	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1313739	1313813	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1313814	1314021	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1314022	1314126	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1314022	1314126	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1314127	1314238	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1314239	1314397	0.65	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1314239	1314397	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1314398	1314498	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1314499	1314626	1	-	2	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1314499	1314626	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1314627	1314755	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1314756	1314950	1	-	2	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1314756	1314950	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1314951	1315067	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1315068	1315189	1	-	1	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1315068	1315189	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1315190	1315330	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1315331	1315464	1	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1315331	1315464	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1315465	1315779	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1315780	1316210	1	-	2	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1315780	1316210	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1316211	1316305	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1316306	1316438	0.95	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1316306	1316438	.	-	.	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	start_codon	1316436	1316438	.	-	0	transcript_id "Ledus.S4G019000.t1"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	transcript	1309009	1316438	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	stop_codon	1309006	1309008	.	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1309009	1309272	1	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1309009	1309272	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1309273	1309817	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1309818	1309898	1	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1309818	1309898	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1309899	1310052	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1310053	1310259	1	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1310053	1310259	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1310260	1310373	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1310374	1310523	1	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1310374	1310523	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1310524	1310728	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1310729	1310785	1	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1310729	1310785	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1310786	1310959	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1310960	1311037	1	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1310960	1311037	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1311038	1311137	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1311138	1311258	1	-	1	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1311138	1311258	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1311259	1311500	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1311501	1311729	1	-	2	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1311501	1311729	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1311730	1311852	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1311853	1311971	1	-	1	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1311853	1311971	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1311972	1312182	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1312183	1312393	1	-	2	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1312183	1312393	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1312394	1312515	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1312516	1312642	1	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1312516	1312642	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1312643	1312762	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1312763	1312948	0.97	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1312763	1312948	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1312949	1313027	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1313028	1313222	1	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1313028	1313222	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1313223	1313355	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1313356	1313493	1	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1313356	1313493	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1313494	1313738	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1313739	1313813	1	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1313739	1313813	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1313814	1314021	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1314022	1314126	1	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1314022	1314126	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1314127	1314238	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1314239	1314397	0.59	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1314239	1314397	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1314398	1314498	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1314499	1314626	1	-	2	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1314499	1314626	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1314627	1314755	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1314756	1314950	1	-	2	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1314756	1314950	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1314951	1315067	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1315068	1315189	1	-	1	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1315068	1315189	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1315190	1315330	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1315331	1315464	1	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1315331	1315464	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1315465	1315779	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1315780	1316204	0.62	-	2	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1315780	1316204	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	intron	1316205	1316305	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	CDS	1316306	1316438	0.95	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	exon	1316306	1316438	.	-	.	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
Ledus.S4	AUGUSTUS	start_codon	1316436	1316438	.	-	0	transcript_id "Ledus.S4G019000.t2"; gene_id "Ledus.S4G019000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10954.t1 is derived from g4572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	877701	879709	.	+	.	Ledus.S4G011000
Ledus.S4	AUGUSTUS	transcript	877701	879709	.	+	.	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	start_codon	877701	877703	.	+	0	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	CDS	877701	877711	0.89	+	0	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	exon	877701	877711	.	+	.	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	intron	877712	877838	.	+	.	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	CDS	877839	878165	0.95	+	1	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	exon	877839	878165	.	+	.	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	intron	878166	878271	.	+	.	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	CDS	878272	878666	0.69	+	1	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	exon	878272	878666	.	+	.	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	intron	878667	878847	.	+	.	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	CDS	878848	879053	1	+	2	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	exon	878848	879053	.	+	.	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	intron	879054	879125	.	+	.	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	CDS	879126	879442	0.53	+	0	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	exon	879126	879442	.	+	.	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	intron	879443	879567	.	+	.	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	CDS	879568	879709	0.55	+	1	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	exon	879568	879709	.	+	.	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
Ledus.S4	AUGUSTUS	stop_codon	879710	879712	.	+	0	transcript_id "Ledus.S4G011000.t1"; gene_id "Ledus.S4G011000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10693.t1 is derived from g11723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17130308	17134852	.	+	.	Ledus.S3G217000
Ledus.S3	AUGUSTUS	transcript	17130308	17134852	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	start_codon	17130308	17130310	.	+	0	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17130308	17130736	0.95	+	0	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17130308	17130736	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17130737	17130864	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17130865	17130987	1	+	0	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17130865	17130987	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17130988	17131099	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17131100	17131215	1	+	0	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17131100	17131215	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17131216	17131313	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17131314	17131501	1	+	1	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17131314	17131501	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17131502	17131638	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17131639	17131913	1	+	2	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17131639	17131913	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17131914	17132050	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17132051	17132130	1	+	0	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17132051	17132130	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17132131	17132215	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17132216	17132463	1	+	1	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17132216	17132463	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17132464	17132549	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17132550	17132690	1	+	2	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17132550	17132690	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17132691	17132768	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17132769	17133031	1	+	2	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17132769	17133031	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17133032	17133204	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17133205	17133519	1	+	0	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17133205	17133519	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17133520	17133636	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17133637	17133946	0.98	+	0	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17133637	17133946	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17133947	17134084	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17134085	17134266	0.99	+	2	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17134085	17134266	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17134267	17134370	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17134371	17134605	1	+	0	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17134371	17134605	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17134606	17134760	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17134761	17134852	0.7	+	2	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17134761	17134852	.	+	.	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	stop_codon	17134853	17134855	.	+	0	transcript_id "Ledus.S3G217000.t1"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	transcript	17130308	17134852	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	start_codon	17130308	17130310	.	+	0	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17130308	17130736	0.88	+	0	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17130308	17130736	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17130737	17130864	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17130865	17130987	0.99	+	0	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17130865	17130987	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17130988	17131099	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17131100	17131215	0.99	+	0	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17131100	17131215	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17131216	17131313	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17131314	17131501	1	+	1	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17131314	17131501	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17131502	17131593	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17131594	17131913	1	+	2	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17131594	17131913	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17131914	17132050	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17132051	17132130	1	+	0	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17132051	17132130	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17132131	17132215	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17132216	17132463	0.99	+	1	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17132216	17132463	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17132464	17132549	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17132550	17132690	1	+	2	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17132550	17132690	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17132691	17132768	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17132769	17133031	1	+	2	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17132769	17133031	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17133032	17133204	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17133205	17133519	1	+	0	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17133205	17133519	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17133520	17133636	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17133637	17133946	0.99	+	0	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17133637	17133946	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17133947	17134084	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17134085	17134266	0.99	+	2	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17134085	17134266	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17134267	17134370	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17134371	17134605	1	+	0	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17134371	17134605	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	intron	17134606	17134760	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	CDS	17134761	17134852	0.75	+	2	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	exon	17134761	17134852	.	+	.	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
Ledus.S3	AUGUSTUS	stop_codon	17134853	17134855	.	+	0	transcript_id "Ledus.S3G217000.t2"; gene_id "Ledus.S3G217000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9435.t1 is derived from g10465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6713130	6714650	.	+	.	Ledus.S3G091200
Ledus.S3	AUGUSTUS	transcript	6713130	6714650	.	+	.	transcript_id "Ledus.S3G091200.t1"; gene_id "Ledus.S3G091200"
Ledus.S3	AUGUSTUS	start_codon	6713130	6713132	.	+	0	transcript_id "Ledus.S3G091200.t1"; gene_id "Ledus.S3G091200"
Ledus.S3	AUGUSTUS	CDS	6713130	6714650	0.71	+	0	transcript_id "Ledus.S3G091200.t1"; gene_id "Ledus.S3G091200"
Ledus.S3	AUGUSTUS	exon	6713130	6714650	.	+	.	transcript_id "Ledus.S3G091200.t1"; gene_id "Ledus.S3G091200"
Ledus.S3	AUGUSTUS	stop_codon	6714651	6714653	.	+	0	transcript_id "Ledus.S3G091200.t1"; gene_id "Ledus.S3G091200"
# This transcript jg5924.t2 is derived from g3367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5925.t1 is derived from g3368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27867968	27869179	.	-	.	Ledus.S1G334600
Ledus.S1	AUGUSTUS	transcript	27867968	27869179	.	-	.	transcript_id "Ledus.S1G334600.t1"; gene_id "Ledus.S1G334600"
Ledus.S1	AUGUSTUS	stop_codon	27867965	27867967	.	-	0	transcript_id "Ledus.S1G334600.t1"; gene_id "Ledus.S1G334600"
Ledus.S1	AUGUSTUS	CDS	27867968	27869179	0.52	-	0	transcript_id "Ledus.S1G334600.t1"; gene_id "Ledus.S1G334600"
Ledus.S1	AUGUSTUS	exon	27867968	27869179	.	-	.	transcript_id "Ledus.S1G334600.t1"; gene_id "Ledus.S1G334600"
Ledus.S1	AUGUSTUS	start_codon	27869177	27869179	.	-	0	transcript_id "Ledus.S1G334600.t1"; gene_id "Ledus.S1G334600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7274.t1 is derived from g11945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	677933	679222	.	+	.	Ledus.S5G005200
Ledus.S5	AUGUSTUS	transcript	677933	679222	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	start_codon	677933	677935	.	+	0	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	CDS	677933	678040	0.97	+	0	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	exon	677933	678040	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	intron	678041	678122	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	CDS	678123	678247	1	+	0	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	exon	678123	678247	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	intron	678248	678383	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	CDS	678384	678421	1	+	1	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	exon	678384	678421	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	intron	678422	678510	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	CDS	678511	678621	1	+	2	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	exon	678511	678621	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	intron	678622	678697	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	CDS	678698	678777	1	+	2	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	exon	678698	678777	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	intron	678778	678865	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	CDS	678866	678902	1	+	0	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	exon	678866	678902	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	intron	678903	678990	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	CDS	678991	679032	1	+	2	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	exon	678991	679032	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	intron	679033	679109	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	CDS	679110	679222	1	+	2	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	exon	679110	679222	.	+	.	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
Ledus.S5	AUGUSTUS	stop_codon	679223	679225	.	+	0	transcript_id "Ledus.S5G005200.t1"; gene_id "Ledus.S5G005200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8193.t1 is derived from g12864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9772088	9773051	.	+	.	Ledus.S5G097100
Ledus.S5	AUGUSTUS	transcript	9772088	9773051	.	+	.	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	start_codon	9772088	9772090	.	+	0	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	CDS	9772088	9772110	0.96	+	0	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	exon	9772088	9772110	.	+	.	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	intron	9772111	9772252	.	+	.	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	CDS	9772253	9772353	0.4	+	1	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	exon	9772253	9772353	.	+	.	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	intron	9772354	9772500	.	+	.	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	CDS	9772501	9772554	0.55	+	2	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	exon	9772501	9772554	.	+	.	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	intron	9772555	9772703	.	+	.	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	CDS	9772704	9772788	0.67	+	2	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	exon	9772704	9772788	.	+	.	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	intron	9772789	9772963	.	+	.	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	CDS	9772964	9773051	0.68	+	1	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	exon	9772964	9773051	.	+	.	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
Ledus.S5	AUGUSTUS	stop_codon	9773052	9773054	.	+	0	transcript_id "Ledus.S5G097100.t1"; gene_id "Ledus.S5G097100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9373.t1 is derived from g10403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6421623	6423669	.	+	.	Ledus.S3G085000
Ledus.S3	AUGUSTUS	transcript	6421623	6423669	.	+	.	transcript_id "Ledus.S3G085000.t1"; gene_id "Ledus.S3G085000"
Ledus.S3	AUGUSTUS	start_codon	6421623	6421625	.	+	0	transcript_id "Ledus.S3G085000.t1"; gene_id "Ledus.S3G085000"
Ledus.S3	AUGUSTUS	CDS	6421623	6421929	0.98	+	0	transcript_id "Ledus.S3G085000.t1"; gene_id "Ledus.S3G085000"
Ledus.S3	AUGUSTUS	exon	6421623	6421929	.	+	.	transcript_id "Ledus.S3G085000.t1"; gene_id "Ledus.S3G085000"
Ledus.S3	AUGUSTUS	intron	6421930	6422140	.	+	.	transcript_id "Ledus.S3G085000.t1"; gene_id "Ledus.S3G085000"
Ledus.S3	AUGUSTUS	CDS	6422141	6422365	1	+	2	transcript_id "Ledus.S3G085000.t1"; gene_id "Ledus.S3G085000"
Ledus.S3	AUGUSTUS	exon	6422141	6422365	.	+	.	transcript_id "Ledus.S3G085000.t1"; gene_id "Ledus.S3G085000"
Ledus.S3	AUGUSTUS	intron	6422366	6422464	.	+	.	transcript_id "Ledus.S3G085000.t1"; gene_id "Ledus.S3G085000"
Ledus.S3	AUGUSTUS	CDS	6422465	6423669	1	+	2	transcript_id "Ledus.S3G085000.t1"; gene_id "Ledus.S3G085000"
Ledus.S3	AUGUSTUS	exon	6422465	6423669	.	+	.	transcript_id "Ledus.S3G085000.t1"; gene_id "Ledus.S3G085000"
Ledus.S3	AUGUSTUS	stop_codon	6423670	6423672	.	+	0	transcript_id "Ledus.S3G085000.t1"; gene_id "Ledus.S3G085000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11468.t1 is derived from g5086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4499299	4499835	.	+	.	Ledus.S4G062400
Ledus.S4	AUGUSTUS	transcript	4499299	4499835	.	+	.	transcript_id "Ledus.S4G062400.t1"; gene_id "Ledus.S4G062400"
Ledus.S4	AUGUSTUS	start_codon	4499299	4499301	.	+	0	transcript_id "Ledus.S4G062400.t1"; gene_id "Ledus.S4G062400"
Ledus.S4	AUGUSTUS	CDS	4499299	4499835	0.48	+	0	transcript_id "Ledus.S4G062400.t1"; gene_id "Ledus.S4G062400"
Ledus.S4	AUGUSTUS	exon	4499299	4499835	.	+	.	transcript_id "Ledus.S4G062400.t1"; gene_id "Ledus.S4G062400"
Ledus.S4	AUGUSTUS	stop_codon	4499836	4499838	.	+	0	transcript_id "Ledus.S4G062400.t1"; gene_id "Ledus.S4G062400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5474.t1 is derived from g2913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24472021	24476013	.	-	.	Ledus.S1G289500
Ledus.S1	AUGUSTUS	transcript	24472021	24476013	.	-	.	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	stop_codon	24472018	24472020	.	-	0	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	CDS	24472021	24473147	1	-	2	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	exon	24472021	24473147	.	-	.	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	intron	24473148	24473241	.	-	.	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	CDS	24473242	24473734	1	-	0	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	exon	24473242	24473734	.	-	.	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	intron	24473735	24473831	.	-	.	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	CDS	24473832	24474239	1	-	0	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	exon	24473832	24474239	.	-	.	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	intron	24474240	24474320	.	-	.	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	CDS	24474321	24474469	1	-	2	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	exon	24474321	24474469	.	-	.	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	intron	24474470	24474554	.	-	.	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	CDS	24474555	24476013	0.84	-	0	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	exon	24474555	24476013	.	-	.	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
Ledus.S1	AUGUSTUS	start_codon	24476011	24476013	.	-	0	transcript_id "Ledus.S1G289500.t1"; gene_id "Ledus.S1G289500"
# This transcript jg7072.t2 is derived from g6603.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7072.t3 is derived from g6603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7073.t1 is derived from g6604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1233485	1233790	.	-	.	Ledus.C7G013400
Ledus.C7	AUGUSTUS	transcript	1233485	1233790	.	-	.	transcript_id "Ledus.C7G013400.t1"; gene_id "Ledus.C7G013400"
Ledus.C7	AUGUSTUS	stop_codon	1233482	1233484	.	-	0	transcript_id "Ledus.C7G013400.t1"; gene_id "Ledus.C7G013400"
Ledus.C7	AUGUSTUS	CDS	1233485	1233790	0.92	-	0	transcript_id "Ledus.C7G013400.t1"; gene_id "Ledus.C7G013400"
Ledus.C7	AUGUSTUS	exon	1233485	1233790	.	-	.	transcript_id "Ledus.C7G013400.t1"; gene_id "Ledus.C7G013400"
Ledus.C7	AUGUSTUS	start_codon	1233788	1233790	.	-	0	transcript_id "Ledus.C7G013400.t1"; gene_id "Ledus.C7G013400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9753.t1 is derived from g10783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9589669	9591928	.	+	.	Ledus.S3G123000
Ledus.S3	AUGUSTUS	transcript	9589669	9591928	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	start_codon	9589669	9589671	.	+	0	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	CDS	9589669	9589857	0.71	+	0	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	exon	9589669	9589857	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	intron	9589858	9589931	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	CDS	9589932	9590056	1	+	0	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	exon	9589932	9590056	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	intron	9590057	9590517	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	CDS	9590518	9590629	1	+	1	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	exon	9590518	9590629	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	intron	9590630	9590803	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	CDS	9590804	9590878	1	+	0	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	exon	9590804	9590878	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	intron	9590879	9590976	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	CDS	9590977	9591065	1	+	0	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	exon	9590977	9591065	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	intron	9591066	9591306	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	CDS	9591307	9591368	1	+	1	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	exon	9591307	9591368	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	intron	9591369	9591527	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	CDS	9591528	9591600	1	+	2	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	exon	9591528	9591600	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	intron	9591601	9591690	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	CDS	9591691	9591766	1	+	1	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	exon	9591691	9591766	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	intron	9591767	9591901	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	CDS	9591902	9591928	1	+	0	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	exon	9591902	9591928	.	+	.	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
Ledus.S3	AUGUSTUS	stop_codon	9591929	9591931	.	+	0	transcript_id "Ledus.S3G123000.t1"; gene_id "Ledus.S3G123000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10833.t1 is derived from g11892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C27	AUGUSTUS	gene	3202	3498	.	-	.	Ledus.C27G000100
Ledus.C27	AUGUSTUS	transcript	3202	3498	.	-	.	transcript_id "Ledus.C27G000100.t1"; gene_id "Ledus.C27G000100"
Ledus.C27	AUGUSTUS	stop_codon	3199	3201	.	-	0	transcript_id "Ledus.C27G000100.t1"; gene_id "Ledus.C27G000100"
Ledus.C27	AUGUSTUS	CDS	3202	3498	0.84	-	0	transcript_id "Ledus.C27G000100.t1"; gene_id "Ledus.C27G000100"
Ledus.C27	AUGUSTUS	exon	3202	3498	.	-	.	transcript_id "Ledus.C27G000100.t1"; gene_id "Ledus.C27G000100"
Ledus.C27	AUGUSTUS	start_codon	3496	3498	.	-	0	transcript_id "Ledus.C27G000100.t1"; gene_id "Ledus.C27G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9471.t1 is derived from g10501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7182354	7185601	.	-	.	Ledus.S3G094800
Ledus.S3	AUGUSTUS	transcript	7182354	7185601	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	stop_codon	7182351	7182353	.	-	0	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7182354	7182467	0.97	-	0	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7182354	7182467	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	intron	7182468	7182552	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7182553	7182619	1	-	1	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7182553	7182619	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	intron	7182620	7182767	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7182768	7182907	1	-	0	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7182768	7182907	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	intron	7182908	7182995	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7182996	7183088	1	-	0	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7182996	7183088	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	intron	7183089	7183284	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7183285	7183467	1	-	0	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7183285	7183467	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	intron	7183468	7183574	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7183575	7183679	0.91	-	0	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7183575	7183679	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	intron	7183680	7183862	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7183863	7183943	1	-	0	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7183863	7183943	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	intron	7183944	7184074	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7184075	7184216	1	-	1	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7184075	7184216	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	intron	7184217	7184335	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7184336	7184415	1	-	0	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7184336	7184415	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	intron	7184416	7184523	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7184524	7184636	1	-	2	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7184524	7184636	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	intron	7184637	7184727	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7184728	7184974	0.95	-	0	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7184728	7184974	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	intron	7184975	7185077	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7185078	7185493	0.99	-	2	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7185078	7185493	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	intron	7185494	7185573	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	CDS	7185574	7185601	0.86	-	0	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	exon	7185574	7185601	.	-	.	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
Ledus.S3	AUGUSTUS	start_codon	7185599	7185601	.	-	0	transcript_id "Ledus.S3G094800.t1"; gene_id "Ledus.S3G094800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10629.t1 is derived from g11659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16584494	16589352	.	+	.	Ledus.S3G210600
Ledus.S3	AUGUSTUS	transcript	16584494	16589352	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	start_codon	16584494	16584496	.	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16584494	16585573	0.99	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16584494	16585573	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16585574	16585706	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16585707	16585838	1	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16585707	16585838	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16585839	16585941	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16585942	16586163	1	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16585942	16586163	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16586164	16586237	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16586238	16586363	0.98	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16586238	16586363	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16586364	16586482	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16586483	16586545	1	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16586483	16586545	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16586546	16586627	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16586628	16586716	0.91	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16586628	16586716	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16586717	16586817	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16586818	16587049	1	+	1	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16586818	16587049	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16587050	16587139	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16587140	16587588	0.96	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16587140	16587588	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16587589	16587695	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16587696	16587783	0.7	+	1	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16587696	16587783	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16587784	16587886	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16587887	16587953	0.94	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16587887	16587953	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16587954	16588058	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16588059	16588345	0.99	+	2	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16588059	16588345	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16588346	16588434	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16588435	16588500	1	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16588435	16588500	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16588501	16588577	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16588578	16588699	1	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16588578	16588699	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16588700	16588843	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16588844	16589000	0.99	+	1	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16588844	16589000	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	intron	16589001	16589103	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	CDS	16589104	16589352	0.66	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	exon	16589104	16589352	.	+	.	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
Ledus.S3	AUGUSTUS	stop_codon	16589353	16589355	.	+	0	transcript_id "Ledus.S3G210600.t1"; gene_id "Ledus.S3G210600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2715.t1 is derived from g148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2493206	2495941	.	-	.	Ledus.S1G013600
Ledus.S1	AUGUSTUS	transcript	2493206	2495941	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	stop_codon	2493203	2493205	.	-	0	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	CDS	2493206	2493618	0.7	-	2	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	exon	2493206	2493618	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	intron	2493619	2494359	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	CDS	2494360	2494410	0.96	-	2	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	exon	2494360	2494410	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	intron	2494411	2494492	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	CDS	2494493	2494538	1	-	0	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	exon	2494493	2494538	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	intron	2494539	2494660	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	CDS	2494661	2494729	1	-	0	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	exon	2494661	2494729	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	intron	2494730	2494820	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	CDS	2494821	2494883	1	-	0	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	exon	2494821	2494883	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	intron	2494884	2494954	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	CDS	2494955	2495203	0.98	-	0	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	exon	2494955	2495203	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	intron	2495204	2495310	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	CDS	2495311	2495373	0.99	-	0	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	exon	2495311	2495373	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	intron	2495374	2495458	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	CDS	2495459	2495544	1	-	2	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	exon	2495459	2495544	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	intron	2495545	2495623	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	CDS	2495624	2495806	1	-	2	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	exon	2495624	2495806	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	intron	2495807	2495898	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	CDS	2495899	2495941	0.9	-	0	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	exon	2495899	2495941	.	-	.	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
Ledus.S1	AUGUSTUS	start_codon	2495939	2495941	.	-	0	transcript_id "Ledus.S1G013600.t1"; gene_id "Ledus.S1G013600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg1405.t1 is derived from g8266.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9906584	9909861	.	+	.	Ledus.S2G128700
Ledus.S2	AUGUSTUS	transcript	9906584	9909861	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	start_codon	9906584	9906586	.	+	0	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9906584	9906710	0.72	+	0	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9906584	9906710	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9906711	9906927	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9906928	9907014	0.56	+	2	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9906928	9907014	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907015	9907098	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9907099	9907490	0.33	+	2	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9907099	9907490	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907491	9907560	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9907561	9907659	0.54	+	0	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9907561	9907659	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907660	9907751	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9907752	9907776	0.56	+	0	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9907752	9907776	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907777	9907837	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9907838	9907881	0.98	+	2	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9907838	9907881	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907882	9908050	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908051	9908281	1	+	0	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908051	9908281	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9908282	9908369	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908370	9908432	0.98	+	0	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908370	9908432	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9908433	9908622	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908623	9908691	0.99	+	0	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908623	9908691	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9908692	9908771	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908772	9908858	1	+	0	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908772	9908858	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9908859	9908992	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908993	9909080	1	+	0	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908993	9909080	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9909081	9909230	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9909231	9909319	1	+	2	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9909231	9909319	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9909320	9909481	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9909482	9909527	1	+	0	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9909482	9909527	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9909528	9909838	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9909839	9909861	0.99	+	2	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9909839	9909861	.	+	.	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	stop_codon	9909862	9909864	.	+	0	transcript_id "Ledus.S2G128700.t1"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	transcript	9906669	9909861	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	start_codon	9906669	9906671	.	+	0	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9906669	9906710	0.68	+	0	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9906669	9906710	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9906711	9906991	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9906992	9907059	0.35	+	0	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9906992	9907059	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907060	9907228	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9907229	9907490	0.35	+	1	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9907229	9907490	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907491	9907560	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9907561	9907659	0.47	+	0	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9907561	9907659	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907660	9907751	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9907752	9907776	0.51	+	0	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9907752	9907776	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907777	9907837	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9907838	9907881	1	+	2	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9907838	9907881	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907882	9908050	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908051	9908281	1	+	0	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908051	9908281	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9908282	9908369	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908370	9908432	0.98	+	0	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908370	9908432	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9908433	9908622	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908623	9908691	0.99	+	0	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908623	9908691	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9908692	9908771	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908772	9908858	1	+	0	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908772	9908858	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9908859	9908992	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908993	9909080	1	+	0	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908993	9909080	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9909081	9909230	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9909231	9909319	1	+	2	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9909231	9909319	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9909320	9909481	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9909482	9909527	1	+	0	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9909482	9909527	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9909528	9909838	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9909839	9909861	0.99	+	2	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9909839	9909861	.	+	.	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	stop_codon	9909862	9909864	.	+	0	transcript_id "Ledus.S2G128700.t2"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	transcript	9906584	9909861	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	start_codon	9906584	9906586	.	+	0	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9906584	9906710	0.46	+	0	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9906584	9906710	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9906711	9906981	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9906982	9907027	0.29	+	2	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9906982	9907027	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907028	9907228	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9907229	9907490	0.27	+	1	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9907229	9907490	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907491	9907560	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9907561	9907659	0.51	+	0	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9907561	9907659	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907660	9907751	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9907752	9907776	0.58	+	0	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9907752	9907776	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907777	9907837	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9907838	9907881	0.99	+	2	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9907838	9907881	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9907882	9908050	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908051	9908281	1	+	0	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908051	9908281	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9908282	9908369	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908370	9908432	0.98	+	0	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908370	9908432	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9908433	9908622	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908623	9908691	0.98	+	0	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908623	9908691	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9908692	9908771	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908772	9908858	0.99	+	0	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908772	9908858	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9908859	9908992	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9908993	9909080	1	+	0	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9908993	9909080	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9909081	9909230	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9909231	9909319	1	+	2	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9909231	9909319	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9909320	9909481	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9909482	9909527	1	+	0	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9909482	9909527	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	intron	9909528	9909838	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	CDS	9909839	9909861	1	+	2	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	exon	9909839	9909861	.	+	.	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
Ledus.S2	AUGUSTUS	stop_codon	9909862	9909864	.	+	0	transcript_id "Ledus.S2G128700.t3"; gene_id "Ledus.S2G128700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11446.t1 is derived from g5064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4370554	4371216	.	-	.	Ledus.S4G060200
Ledus.S4	AUGUSTUS	transcript	4370554	4371216	.	-	.	transcript_id "Ledus.S4G060200.t1"; gene_id "Ledus.S4G060200"
Ledus.S4	AUGUSTUS	stop_codon	4370551	4370553	.	-	0	transcript_id "Ledus.S4G060200.t1"; gene_id "Ledus.S4G060200"
Ledus.S4	AUGUSTUS	CDS	4370554	4370627	0.21	-	2	transcript_id "Ledus.S4G060200.t1"; gene_id "Ledus.S4G060200"
Ledus.S4	AUGUSTUS	exon	4370554	4370627	.	-	.	transcript_id "Ledus.S4G060200.t1"; gene_id "Ledus.S4G060200"
Ledus.S4	AUGUSTUS	intron	4370628	4370990	.	-	.	transcript_id "Ledus.S4G060200.t1"; gene_id "Ledus.S4G060200"
Ledus.S4	AUGUSTUS	CDS	4370991	4371216	0.61	-	0	transcript_id "Ledus.S4G060200.t1"; gene_id "Ledus.S4G060200"
Ledus.S4	AUGUSTUS	exon	4370991	4371216	.	-	.	transcript_id "Ledus.S4G060200.t1"; gene_id "Ledus.S4G060200"
Ledus.S4	AUGUSTUS	start_codon	4371214	4371216	.	-	0	transcript_id "Ledus.S4G060200.t1"; gene_id "Ledus.S4G060200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12663.t1 is derived from g6285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13698080	13698660	.	-	.	Ledus.S4G181900
Ledus.S4	AUGUSTUS	transcript	13698080	13698660	.	-	.	transcript_id "Ledus.S4G181900.t1"; gene_id "Ledus.S4G181900"
Ledus.S4	AUGUSTUS	stop_codon	13698077	13698079	.	-	0	transcript_id "Ledus.S4G181900.t1"; gene_id "Ledus.S4G181900"
Ledus.S4	AUGUSTUS	CDS	13698080	13698410	0.93	-	1	transcript_id "Ledus.S4G181900.t1"; gene_id "Ledus.S4G181900"
Ledus.S4	AUGUSTUS	exon	13698080	13698410	.	-	.	transcript_id "Ledus.S4G181900.t1"; gene_id "Ledus.S4G181900"
Ledus.S4	AUGUSTUS	intron	13698411	13698526	.	-	.	transcript_id "Ledus.S4G181900.t1"; gene_id "Ledus.S4G181900"
Ledus.S4	AUGUSTUS	CDS	13698527	13698660	0.84	-	0	transcript_id "Ledus.S4G181900.t1"; gene_id "Ledus.S4G181900"
Ledus.S4	AUGUSTUS	exon	13698527	13698660	.	-	.	transcript_id "Ledus.S4G181900.t1"; gene_id "Ledus.S4G181900"
Ledus.S4	AUGUSTUS	start_codon	13698658	13698660	.	-	0	transcript_id "Ledus.S4G181900.t1"; gene_id "Ledus.S4G181900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3018.t1 is derived from g453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5358106	5359878	.	+	.	Ledus.S1G043900
Ledus.S1	AUGUSTUS	transcript	5358106	5359878	.	+	.	transcript_id "Ledus.S1G043900.t1"; gene_id "Ledus.S1G043900"
Ledus.S1	AUGUSTUS	start_codon	5358106	5358108	.	+	0	transcript_id "Ledus.S1G043900.t1"; gene_id "Ledus.S1G043900"
Ledus.S1	AUGUSTUS	CDS	5358106	5359878	0.95	+	0	transcript_id "Ledus.S1G043900.t1"; gene_id "Ledus.S1G043900"
Ledus.S1	AUGUSTUS	exon	5358106	5359878	.	+	.	transcript_id "Ledus.S1G043900.t1"; gene_id "Ledus.S1G043900"
Ledus.S1	AUGUSTUS	stop_codon	5359879	5359881	.	+	0	transcript_id "Ledus.S1G043900.t1"; gene_id "Ledus.S1G043900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10848.t1 is derived from g4466.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	40237	42207	.	+	.	Ledus.S4G000400
Ledus.S4	AUGUSTUS	transcript	40237	42207	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	start_codon	40237	40239	.	+	0	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	CDS	40237	40547	0.99	+	0	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	exon	40237	40547	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	intron	40548	40639	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	CDS	40640	40880	1	+	1	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	exon	40640	40880	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	intron	40881	40967	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	CDS	40968	41048	1	+	0	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	exon	40968	41048	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	intron	41049	41149	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	CDS	41150	41257	1	+	0	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	exon	41150	41257	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	intron	41258	41385	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	CDS	41386	41505	1	+	0	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	exon	41386	41505	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	intron	41506	41597	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	CDS	41598	41765	1	+	0	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	exon	41598	41765	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	intron	41766	41864	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	CDS	41865	41951	1	+	0	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	exon	41865	41951	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	intron	41952	42096	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	CDS	42097	42207	1	+	0	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	exon	42097	42207	.	+	.	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
Ledus.S4	AUGUSTUS	stop_codon	42208	42210	.	+	0	transcript_id "Ledus.S4G000400.t1"; gene_id "Ledus.S4G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13010.t1 is derived from g6820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2786022	2786522	.	+	.	Ledus.S6G007200
Ledus.S6	AUGUSTUS	transcript	2786022	2786522	.	+	.	transcript_id "Ledus.S6G007200.t1"; gene_id "Ledus.S6G007200"
Ledus.S6	AUGUSTUS	start_codon	2786022	2786024	.	+	0	transcript_id "Ledus.S6G007200.t1"; gene_id "Ledus.S6G007200"
Ledus.S6	AUGUSTUS	CDS	2786022	2786522	0.73	+	0	transcript_id "Ledus.S6G007200.t1"; gene_id "Ledus.S6G007200"
Ledus.S6	AUGUSTUS	exon	2786022	2786522	.	+	.	transcript_id "Ledus.S6G007200.t1"; gene_id "Ledus.S6G007200"
Ledus.S6	AUGUSTUS	stop_codon	2786523	2786525	.	+	0	transcript_id "Ledus.S6G007200.t1"; gene_id "Ledus.S6G007200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3540.t1 is derived from g976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9347759	9350728	.	+	.	Ledus.S1G096100
Ledus.S1	AUGUSTUS	transcript	9347759	9350728	.	+	.	transcript_id "Ledus.S1G096100.t1"; gene_id "Ledus.S1G096100"
Ledus.S1	AUGUSTUS	start_codon	9347759	9347761	.	+	0	transcript_id "Ledus.S1G096100.t1"; gene_id "Ledus.S1G096100"
Ledus.S1	AUGUSTUS	CDS	9347759	9348565	0.65	+	0	transcript_id "Ledus.S1G096100.t1"; gene_id "Ledus.S1G096100"
Ledus.S1	AUGUSTUS	exon	9347759	9348565	.	+	.	transcript_id "Ledus.S1G096100.t1"; gene_id "Ledus.S1G096100"
Ledus.S1	AUGUSTUS	intron	9348566	9348783	.	+	.	transcript_id "Ledus.S1G096100.t1"; gene_id "Ledus.S1G096100"
Ledus.S1	AUGUSTUS	CDS	9348784	9350252	0.98	+	0	transcript_id "Ledus.S1G096100.t1"; gene_id "Ledus.S1G096100"
Ledus.S1	AUGUSTUS	exon	9348784	9350252	.	+	.	transcript_id "Ledus.S1G096100.t1"; gene_id "Ledus.S1G096100"
Ledus.S1	AUGUSTUS	intron	9350253	9350328	.	+	.	transcript_id "Ledus.S1G096100.t1"; gene_id "Ledus.S1G096100"
Ledus.S1	AUGUSTUS	CDS	9350329	9350728	1	+	1	transcript_id "Ledus.S1G096100.t1"; gene_id "Ledus.S1G096100"
Ledus.S1	AUGUSTUS	exon	9350329	9350728	.	+	.	transcript_id "Ledus.S1G096100.t1"; gene_id "Ledus.S1G096100"
Ledus.S1	AUGUSTUS	stop_codon	9350729	9350731	.	+	0	transcript_id "Ledus.S1G096100.t1"; gene_id "Ledus.S1G096100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1624.t1 is derived from g8485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11471555	11471995	.	-	.	Ledus.S2G150600
Ledus.S2	AUGUSTUS	transcript	11471555	11471995	.	-	.	transcript_id "Ledus.S2G150600.t1"; gene_id "Ledus.S2G150600"
Ledus.S2	AUGUSTUS	stop_codon	11471552	11471554	.	-	0	transcript_id "Ledus.S2G150600.t1"; gene_id "Ledus.S2G150600"
Ledus.S2	AUGUSTUS	CDS	11471555	11471995	0.65	-	0	transcript_id "Ledus.S2G150600.t1"; gene_id "Ledus.S2G150600"
Ledus.S2	AUGUSTUS	exon	11471555	11471995	.	-	.	transcript_id "Ledus.S2G150600.t1"; gene_id "Ledus.S2G150600"
Ledus.S2	AUGUSTUS	start_codon	11471993	11471995	.	-	0	transcript_id "Ledus.S2G150600.t1"; gene_id "Ledus.S2G150600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2133.t1 is derived from g8996.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14939575	14943762	.	-	.	Ledus.S2G201500
Ledus.S2	AUGUSTUS	transcript	14939575	14943762	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	stop_codon	14939572	14939574	.	-	0	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	CDS	14939575	14940838	1	-	1	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	exon	14939575	14940838	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	intron	14940839	14941036	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	CDS	14941037	14941162	1	-	1	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	exon	14941037	14941162	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	intron	14941163	14941277	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	CDS	14941278	14941500	0.99	-	2	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	exon	14941278	14941500	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	intron	14941501	14941597	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	CDS	14941598	14941700	1	-	0	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	exon	14941598	14941700	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	intron	14941701	14941822	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	CDS	14941823	14941863	1	-	2	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	exon	14941823	14941863	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	intron	14941864	14942018	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	CDS	14942019	14942057	1	-	2	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	exon	14942019	14942057	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	intron	14942058	14942580	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	CDS	14942581	14943108	0.99	-	2	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	exon	14942581	14943108	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	intron	14943109	14943237	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	CDS	14943238	14943414	1	-	2	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	exon	14943238	14943414	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	intron	14943415	14943503	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	CDS	14943504	14943649	1	-	1	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	exon	14943504	14943649	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	intron	14943650	14943748	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	CDS	14943749	14943762	1	-	0	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	exon	14943749	14943762	.	-	.	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
Ledus.S2	AUGUSTUS	start_codon	14943760	14943762	.	-	0	transcript_id "Ledus.S2G201500.t1"; gene_id "Ledus.S2G201500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5280.t1 is derived from g2719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22840213	22842255	.	-	.	Ledus.S1G270100
Ledus.S1	AUGUSTUS	transcript	22840213	22842255	.	-	.	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	stop_codon	22840210	22840212	.	-	0	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	CDS	22840213	22840531	0.99	-	1	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	exon	22840213	22840531	.	-	.	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	intron	22840532	22840638	.	-	.	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	CDS	22840639	22841275	0.98	-	2	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	exon	22840639	22841275	.	-	.	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	intron	22841276	22841382	.	-	.	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	CDS	22841383	22841389	0.6	-	0	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	exon	22841383	22841389	.	-	.	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	intron	22841390	22841695	.	-	.	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	CDS	22841696	22841762	1	-	1	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	exon	22841696	22841762	.	-	.	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	intron	22841763	22841957	.	-	.	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	CDS	22841958	22842066	0.96	-	2	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	exon	22841958	22842066	.	-	.	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	intron	22842067	22842179	.	-	.	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	CDS	22842180	22842255	0.86	-	0	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	exon	22842180	22842255	.	-	.	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
Ledus.S1	AUGUSTUS	start_codon	22842253	22842255	.	-	0	transcript_id "Ledus.S1G270100.t1"; gene_id "Ledus.S1G270100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11483.t1 is derived from g5101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4866872	4868798	.	-	.	Ledus.S4G063900
Ledus.S4	AUGUSTUS	transcript	4866872	4868798	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	stop_codon	4866869	4866871	.	-	0	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	CDS	4866872	4866985	1	-	0	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	exon	4866872	4866985	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	intron	4866986	4867075	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	CDS	4867076	4867141	1	-	0	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	exon	4867076	4867141	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	intron	4867142	4867223	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	CDS	4867224	4867314	1	-	1	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	exon	4867224	4867314	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	intron	4867315	4867403	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	CDS	4867404	4867533	1	-	2	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	exon	4867404	4867533	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	intron	4867534	4867621	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	CDS	4867622	4867710	1	-	1	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	exon	4867622	4867710	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	intron	4867711	4867787	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	CDS	4867788	4867864	1	-	0	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	exon	4867788	4867864	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	intron	4867865	4867942	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	CDS	4867943	4868011	1	-	0	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	exon	4867943	4868011	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	intron	4868012	4868107	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	CDS	4868108	4868182	1	-	0	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	exon	4868108	4868182	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	intron	4868183	4868272	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	CDS	4868273	4868368	1	-	0	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	exon	4868273	4868368	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	intron	4868369	4868510	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	CDS	4868511	4868798	0.96	-	0	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	exon	4868511	4868798	.	-	.	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
Ledus.S4	AUGUSTUS	start_codon	4868796	4868798	.	-	0	transcript_id "Ledus.S4G063900.t1"; gene_id "Ledus.S4G063900"
# This transcript jg1723.t2 is derived from g8584.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1724.t1 is derived from g8585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12139616	12144690	.	-	.	Ledus.S2G160600
Ledus.S2	AUGUSTUS	transcript	12139616	12144690	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	stop_codon	12139613	12139615	.	-	0	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	CDS	12139616	12139743	0.98	-	2	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	exon	12139616	12139743	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	intron	12139744	12139854	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	CDS	12139855	12140116	0.31	-	0	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	exon	12139855	12140116	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	intron	12140117	12140209	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	CDS	12140210	12140719	0.99	-	0	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	exon	12140210	12140719	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	intron	12140720	12140814	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	CDS	12140815	12140964	1	-	0	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	exon	12140815	12140964	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	intron	12140965	12141079	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	CDS	12141080	12141377	1	-	1	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	exon	12141080	12141377	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	intron	12141378	12141533	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	CDS	12141534	12141912	1	-	2	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	exon	12141534	12141912	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	intron	12141913	12142000	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	CDS	12142001	12142767	1	-	1	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	exon	12142001	12142767	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	intron	12142768	12142857	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	CDS	12142858	12142999	1	-	2	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	exon	12142858	12142999	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	intron	12143000	12143138	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	CDS	12143139	12143271	1	-	0	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	exon	12143139	12143271	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	intron	12143272	12143710	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	CDS	12143711	12143754	1	-	2	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	exon	12143711	12143754	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	intron	12143755	12144506	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	CDS	12144507	12144690	0.57	-	0	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	exon	12144507	12144690	.	-	.	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
Ledus.S2	AUGUSTUS	start_codon	12144688	12144690	.	-	0	transcript_id "Ledus.S2G160600.t1"; gene_id "Ledus.S2G160600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3126.t1 is derived from g561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6151365	6152530	.	+	.	Ledus.S1G054700
Ledus.S1	AUGUSTUS	transcript	6151365	6152530	.	+	.	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	start_codon	6151365	6151367	.	+	0	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	CDS	6151365	6151529	0.84	+	0	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	exon	6151365	6151529	.	+	.	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	intron	6151530	6151676	.	+	.	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	CDS	6151677	6151779	1	+	0	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	exon	6151677	6151779	.	+	.	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	intron	6151780	6151880	.	+	.	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	CDS	6151881	6151937	0.96	+	2	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	exon	6151881	6151937	.	+	.	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	intron	6151938	6152046	.	+	.	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	CDS	6152047	6152124	1	+	2	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	exon	6152047	6152124	.	+	.	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	intron	6152125	6152207	.	+	.	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	CDS	6152208	6152530	0.98	+	2	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	exon	6152208	6152530	.	+	.	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
Ledus.S1	AUGUSTUS	stop_codon	6152531	6152533	.	+	0	transcript_id "Ledus.S1G054700.t1"; gene_id "Ledus.S1G054700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3374.t1 is derived from g809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7940618	7943312	.	+	.	Ledus.S1G079500
Ledus.S1	AUGUSTUS	transcript	7940618	7943312	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	start_codon	7940618	7940620	.	+	0	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	CDS	7940618	7940865	1	+	0	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	exon	7940618	7940865	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	intron	7940866	7940997	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	CDS	7940998	7941082	0.99	+	1	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	exon	7940998	7941082	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	intron	7941083	7941183	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	CDS	7941184	7941314	1	+	0	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	exon	7941184	7941314	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	intron	7941315	7941398	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	CDS	7941399	7941501	1	+	1	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	exon	7941399	7941501	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	intron	7941502	7941737	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	CDS	7941738	7941752	1	+	0	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	exon	7941738	7941752	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	intron	7941753	7941903	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	CDS	7941904	7942052	1	+	0	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	exon	7941904	7942052	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	intron	7942053	7942215	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	CDS	7942216	7942447	0.67	+	1	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	exon	7942216	7942447	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	intron	7942448	7942712	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	CDS	7942713	7942832	0.99	+	0	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	exon	7942713	7942832	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	intron	7942833	7942929	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	CDS	7942930	7942974	1	+	0	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	exon	7942930	7942974	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	intron	7942975	7943101	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	CDS	7943102	7943200	1	+	0	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	exon	7943102	7943200	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	intron	7943201	7943294	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	CDS	7943295	7943312	1	+	0	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	exon	7943295	7943312	.	+	.	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
Ledus.S1	AUGUSTUS	stop_codon	7943313	7943315	.	+	0	transcript_id "Ledus.S1G079500.t1"; gene_id "Ledus.S1G079500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11215.t1 is derived from g4833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2764639	2764845	.	-	.	Ledus.S4G037100
Ledus.S4	AUGUSTUS	transcript	2764639	2764845	.	-	.	transcript_id "Ledus.S4G037100.t1"; gene_id "Ledus.S4G037100"
Ledus.S4	AUGUSTUS	stop_codon	2764636	2764638	.	-	0	transcript_id "Ledus.S4G037100.t1"; gene_id "Ledus.S4G037100"
Ledus.S4	AUGUSTUS	CDS	2764639	2764845	0.58	-	0	transcript_id "Ledus.S4G037100.t1"; gene_id "Ledus.S4G037100"
Ledus.S4	AUGUSTUS	exon	2764639	2764845	.	-	.	transcript_id "Ledus.S4G037100.t1"; gene_id "Ledus.S4G037100"
Ledus.S4	AUGUSTUS	start_codon	2764843	2764845	.	-	0	transcript_id "Ledus.S4G037100.t1"; gene_id "Ledus.S4G037100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1251.t1 is derived from g8112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8892219	8898370	.	+	.	Ledus.S2G113300
Ledus.S2	AUGUSTUS	transcript	8892219	8898370	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	start_codon	8892219	8892221	.	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8892219	8892391	1	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8892219	8892391	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8892392	8892461	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8892462	8892530	1	+	1	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8892462	8892530	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8892531	8892610	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8892611	8892755	1	+	1	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8892611	8892755	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8892756	8892834	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8892835	8892950	1	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8892835	8892950	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8892951	8893059	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8893060	8893136	0.97	+	1	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8893060	8893136	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8893137	8893237	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8893238	8893767	0.99	+	2	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8893238	8893767	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8893768	8893896	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8893897	8894046	0.97	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8893897	8894046	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8894047	8894157	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8894158	8894290	1	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8894158	8894290	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8894291	8894451	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8894452	8894540	1	+	2	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8894452	8894540	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8894541	8894652	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8894653	8894703	1	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8894653	8894703	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8894704	8894770	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8894771	8894968	1	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8894771	8894968	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8894969	8895073	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8895074	8895193	1	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8895074	8895193	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8895194	8895293	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8895294	8895386	1	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8895294	8895386	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8895387	8895479	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8895480	8895539	0.98	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8895480	8895539	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8895540	8895643	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8895644	8895730	0.99	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8895644	8895730	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8895731	8895823	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8895824	8895907	1	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8895824	8895907	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8895908	8895997	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8895998	8896070	0.95	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8895998	8896070	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8896071	8896180	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8896181	8896243	0.94	+	2	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8896181	8896243	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8896244	8896383	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8896384	8896994	0.71	+	2	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8896384	8896994	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8896995	8897107	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8897108	8897232	1	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8897108	8897232	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8897233	8897324	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8897325	8897394	1	+	1	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8897325	8897394	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8897395	8897486	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8897487	8898121	0.89	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8897487	8898121	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8898122	8898192	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8898193	8898253	1	+	1	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8898193	8898253	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8898254	8898334	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8898335	8898370	0.57	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8898335	8898370	.	+	.	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	stop_codon	8898371	8898373	.	+	0	transcript_id "Ledus.S2G113300.t1"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	transcript	8892219	8898370	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	start_codon	8892219	8892221	.	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8892219	8892391	1	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8892219	8892391	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8892392	8892461	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8892462	8892530	1	+	1	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8892462	8892530	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8892531	8892610	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8892611	8892755	1	+	1	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8892611	8892755	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8892756	8892834	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8892835	8892950	1	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8892835	8892950	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8892951	8893059	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8893060	8893136	0.94	+	1	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8893060	8893136	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8893137	8893237	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8893238	8893767	1	+	2	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8893238	8893767	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8893768	8893896	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8893897	8894046	0.99	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8893897	8894046	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8894047	8894157	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8894158	8894290	0.99	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8894158	8894290	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8894291	8894451	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8894452	8894540	0.95	+	2	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8894452	8894540	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8894541	8894659	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8894660	8894703	0.91	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8894660	8894703	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8894704	8894778	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8894779	8894968	0.94	+	1	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8894779	8894968	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8894969	8895073	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8895074	8895193	0.99	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8895074	8895193	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8895194	8895293	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8895294	8895386	1	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8895294	8895386	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8895387	8895479	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8895480	8895539	0.99	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8895480	8895539	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8895540	8895643	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8895644	8895730	1	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8895644	8895730	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8895731	8895823	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8895824	8895907	1	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8895824	8895907	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8895908	8895997	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8895998	8896070	0.96	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8895998	8896070	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8896071	8896180	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8896181	8896243	0.96	+	2	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8896181	8896243	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8896244	8896383	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8896384	8896994	0.72	+	2	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8896384	8896994	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8896995	8897107	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8897108	8897232	1	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8897108	8897232	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8897233	8897324	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8897325	8897394	1	+	1	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8897325	8897394	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8897395	8897486	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8897487	8898121	0.93	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8897487	8898121	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8898122	8898192	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8898193	8898253	1	+	1	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8898193	8898253	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	intron	8898254	8898334	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	CDS	8898335	8898370	0.59	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	exon	8898335	8898370	.	+	.	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
Ledus.S2	AUGUSTUS	stop_codon	8898371	8898373	.	+	0	transcript_id "Ledus.S2G113300.t2"; gene_id "Ledus.S2G113300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3978.t1 is derived from g1414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13873302	13874500	.	-	.	Ledus.S1G139900
Ledus.S1	AUGUSTUS	transcript	13873302	13874500	.	-	.	transcript_id "Ledus.S1G139900.t1"; gene_id "Ledus.S1G139900"
Ledus.S1	AUGUSTUS	stop_codon	13873299	13873301	.	-	0	transcript_id "Ledus.S1G139900.t1"; gene_id "Ledus.S1G139900"
Ledus.S1	AUGUSTUS	CDS	13873302	13873562	1	-	0	transcript_id "Ledus.S1G139900.t1"; gene_id "Ledus.S1G139900"
Ledus.S1	AUGUSTUS	exon	13873302	13873562	.	-	.	transcript_id "Ledus.S1G139900.t1"; gene_id "Ledus.S1G139900"
Ledus.S1	AUGUSTUS	intron	13873563	13873651	.	-	.	transcript_id "Ledus.S1G139900.t1"; gene_id "Ledus.S1G139900"
Ledus.S1	AUGUSTUS	CDS	13873652	13874500	0.52	-	0	transcript_id "Ledus.S1G139900.t1"; gene_id "Ledus.S1G139900"
Ledus.S1	AUGUSTUS	exon	13873652	13874500	.	-	.	transcript_id "Ledus.S1G139900.t1"; gene_id "Ledus.S1G139900"
Ledus.S1	AUGUSTUS	start_codon	13874498	13874500	.	-	0	transcript_id "Ledus.S1G139900.t1"; gene_id "Ledus.S1G139900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8293.t1 is derived from g12964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10536362	10538347	.	-	.	Ledus.S5G107100
Ledus.S5	AUGUSTUS	transcript	10536362	10538347	.	-	.	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	stop_codon	10536359	10536361	.	-	0	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	CDS	10536362	10537001	1	-	1	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	exon	10536362	10537001	.	-	.	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	intron	10537002	10537342	.	-	.	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	CDS	10537343	10537530	1	-	0	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	exon	10537343	10537530	.	-	.	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	intron	10537531	10537613	.	-	.	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	CDS	10537614	10537711	1	-	2	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	exon	10537614	10537711	.	-	.	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	intron	10537712	10537790	.	-	.	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	CDS	10537791	10537995	0.99	-	0	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	exon	10537791	10537995	.	-	.	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	intron	10537996	10538077	.	-	.	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	CDS	10538078	10538347	0.52	-	0	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	exon	10538078	10538347	.	-	.	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
Ledus.S5	AUGUSTUS	start_codon	10538345	10538347	.	-	0	transcript_id "Ledus.S5G107100.t1"; gene_id "Ledus.S5G107100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3147.t1 is derived from g582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6281279	6283524	.	-	.	Ledus.S1G056800
Ledus.S1	AUGUSTUS	transcript	6281279	6283524	.	-	.	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	stop_codon	6281276	6281278	.	-	0	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	CDS	6281279	6281599	0.95	-	0	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	exon	6281279	6281599	.	-	.	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	intron	6281600	6281679	.	-	.	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	CDS	6281680	6282006	0.99	-	0	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	exon	6281680	6282006	.	-	.	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	intron	6282007	6282111	.	-	.	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	CDS	6282112	6282698	0.95	-	2	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	exon	6282112	6282698	.	-	.	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	intron	6282699	6282782	.	-	.	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	CDS	6282783	6283524	0.85	-	0	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	exon	6282783	6283524	.	-	.	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
Ledus.S1	AUGUSTUS	start_codon	6283522	6283524	.	-	0	transcript_id "Ledus.S1G056800.t1"; gene_id "Ledus.S1G056800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4917.t1 is derived from g2355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20619082	20623425	.	-	.	Ledus.S1G233800
Ledus.S1	AUGUSTUS	transcript	20619082	20623425	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	stop_codon	20619079	20619081	.	-	0	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20619082	20619197	0.94	-	2	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20619082	20619197	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20619198	20619292	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20619293	20619419	1	-	0	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20619293	20619419	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20619420	20619511	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20619512	20619552	1	-	2	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20619512	20619552	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20619553	20619679	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20619680	20619721	1	-	2	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20619680	20619721	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20619722	20619811	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20619812	20619881	1	-	0	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20619812	20619881	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20619882	20619973	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20619974	20620092	1	-	2	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20619974	20620092	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20620093	20620211	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20620212	20620331	0.99	-	2	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20620212	20620331	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20620332	20620458	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20620459	20620519	1	-	0	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20620459	20620519	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20620520	20620655	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20620656	20620766	1	-	0	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20620656	20620766	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20620767	20620902	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20620903	20620980	1	-	0	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20620903	20620980	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20620981	20621237	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20621238	20621265	1	-	1	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20621238	20621265	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20621266	20621697	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20621698	20621747	1	-	0	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20621698	20621747	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20621748	20621896	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20621897	20621959	1	-	0	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20621897	20621959	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20621960	20622100	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20622101	20622142	1	-	0	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20622101	20622142	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20622143	20622405	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20622406	20622472	1	-	1	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20622406	20622472	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20622473	20622648	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20622649	20622905	1	-	0	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20622649	20622905	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	intron	20622906	20623179	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	CDS	20623180	20623425	0.82	-	0	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	exon	20623180	20623425	.	-	.	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
Ledus.S1	AUGUSTUS	start_codon	20623423	20623425	.	-	0	transcript_id "Ledus.S1G233800.t1"; gene_id "Ledus.S1G233800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1659.t1 is derived from g8520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11754171	11755569	.	-	.	Ledus.S2G154100
Ledus.S2	AUGUSTUS	transcript	11754171	11755569	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	stop_codon	11754168	11754170	.	-	0	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	CDS	11754171	11754284	0.63	-	0	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	exon	11754171	11754284	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	intron	11754285	11754428	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	CDS	11754429	11754527	0.94	-	0	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	exon	11754429	11754527	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	intron	11754528	11754626	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	CDS	11754627	11754674	0.94	-	0	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	exon	11754627	11754674	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	intron	11754675	11754774	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	CDS	11754775	11754824	1	-	2	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	exon	11754775	11754824	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	intron	11754825	11755049	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	CDS	11755050	11755125	1	-	0	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	exon	11755050	11755125	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	intron	11755126	11755234	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	CDS	11755235	11755323	0.99	-	2	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	exon	11755235	11755323	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	intron	11755324	11755397	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	CDS	11755398	11755569	0.73	-	0	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	exon	11755398	11755569	.	-	.	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
Ledus.S2	AUGUSTUS	start_codon	11755567	11755569	.	-	0	transcript_id "Ledus.S2G154100.t1"; gene_id "Ledus.S2G154100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12392.t1 is derived from g6013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11610506	11611138	.	-	.	Ledus.S4G154800
Ledus.S4	AUGUSTUS	transcript	11610506	11611138	.	-	.	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	stop_codon	11610503	11610505	.	-	0	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	CDS	11610506	11610544	0.99	-	0	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	exon	11610506	11610544	.	-	.	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	intron	11610545	11610672	.	-	.	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	CDS	11610673	11610726	0.99	-	0	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	exon	11610673	11610726	.	-	.	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	intron	11610727	11610840	.	-	.	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	CDS	11610841	11610986	0.74	-	2	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	exon	11610841	11610986	.	-	.	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	intron	11610987	11611134	.	-	.	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	CDS	11611135	11611138	0.85	-	0	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	exon	11611135	11611138	.	-	.	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
Ledus.S4	AUGUSTUS	start_codon	11611136	11611138	.	-	0	transcript_id "Ledus.S4G154800.t1"; gene_id "Ledus.S4G154800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11165.t1 is derived from g4783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2274556	2279315	.	-	.	Ledus.S4G032100
Ledus.S4	AUGUSTUS	transcript	2274556	2279315	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	stop_codon	2274553	2274555	.	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2274556	2274708	1	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2274556	2274708	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2274709	2274794	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2274795	2274983	1	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2274795	2274983	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2274984	2275079	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2275080	2275355	1	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2275080	2275355	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2275356	2275457	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2275458	2275682	1	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2275458	2275682	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2275683	2275796	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2275797	2275862	1	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2275797	2275862	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2275863	2275984	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2275985	2276140	1	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2275985	2276140	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2276141	2276260	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2276261	2276323	0.99	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2276261	2276323	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2276324	2276560	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2276561	2276659	1	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2276561	2276659	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2276660	2276923	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2276924	2277073	1	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2276924	2277073	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2277074	2277155	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2277156	2277269	1	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2277156	2277269	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2277270	2277377	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2277378	2277410	1	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2277378	2277410	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2277411	2277528	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2277529	2278619	1	-	2	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2277529	2278619	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2278620	2278756	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2278757	2279107	0.73	-	2	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2278757	2279107	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	intron	2279108	2279224	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	CDS	2279225	2279315	0.71	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	exon	2279225	2279315	.	-	.	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
Ledus.S4	AUGUSTUS	start_codon	2279313	2279315	.	-	0	transcript_id "Ledus.S4G032100.t1"; gene_id "Ledus.S4G032100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9780.t1 is derived from g10810.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9758854	9761222	.	-	.	Ledus.S3G125700
Ledus.S3	AUGUSTUS	transcript	9760338	9761222	.	-	.	transcript_id "Ledus.S3G125700.t1"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	stop_codon	9760335	9760337	.	-	0	transcript_id "Ledus.S3G125700.t1"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	CDS	9760338	9760399	0.94	-	2	transcript_id "Ledus.S3G125700.t1"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	exon	9760338	9760399	.	-	.	transcript_id "Ledus.S3G125700.t1"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	intron	9760400	9760576	.	-	.	transcript_id "Ledus.S3G125700.t1"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	CDS	9760577	9761222	1	-	0	transcript_id "Ledus.S3G125700.t1"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	exon	9760577	9761222	.	-	.	transcript_id "Ledus.S3G125700.t1"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	start_codon	9761220	9761222	.	-	0	transcript_id "Ledus.S3G125700.t1"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	transcript	9758854	9761222	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	stop_codon	9758851	9758853	.	-	0	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	CDS	9758854	9759044	0.94	-	2	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	exon	9758854	9759044	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	intron	9759045	9759163	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	CDS	9759164	9759231	1	-	1	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	exon	9759164	9759231	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	intron	9759232	9759424	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	CDS	9759425	9759504	1	-	0	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	exon	9759425	9759504	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	intron	9759505	9759685	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	CDS	9759686	9759755	1	-	1	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	exon	9759686	9759755	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	intron	9759756	9759970	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	CDS	9759971	9760191	1	-	0	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	exon	9759971	9760191	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	intron	9760192	9760303	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	CDS	9760304	9760399	0.78	-	0	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	exon	9760304	9760399	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	intron	9760400	9760676	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	CDS	9760677	9761222	1	-	0	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	exon	9760677	9761222	.	-	.	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
Ledus.S3	AUGUSTUS	start_codon	9761220	9761222	.	-	0	transcript_id "Ledus.S3G125700.t2"; gene_id "Ledus.S3G125700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9914.t1 is derived from g10944.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11137940	11140456	.	-	.	Ledus.S3G139100
Ledus.S3	AUGUSTUS	transcript	11137940	11140456	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	stop_codon	11137937	11137939	.	-	0	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11137940	11138092	0.98	-	0	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11137940	11138092	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11138093	11138202	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11138203	11138343	0.99	-	0	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11138203	11138343	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11138344	11138517	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11138518	11138638	1	-	1	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11138518	11138638	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11138639	11138760	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11138761	11138972	1	-	0	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11138761	11138972	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11138973	11139051	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11139052	11139165	0.99	-	0	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11139052	11139165	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11139166	11139299	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11139300	11140114	1	-	2	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11139300	11140114	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11140115	11140218	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11140219	11140456	1	-	0	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11140219	11140456	.	-	.	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	start_codon	11140454	11140456	.	-	0	transcript_id "Ledus.S3G139100.t1"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	transcript	11137940	11140456	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	stop_codon	11137937	11137939	.	-	0	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11137940	11138092	0.96	-	0	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11137940	11138092	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11138093	11138202	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11138203	11138343	0.98	-	0	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11138203	11138343	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11138344	11138517	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11138518	11138638	1	-	1	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11138518	11138638	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11138639	11138760	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11138761	11138972	1	-	0	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11138761	11138972	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11138973	11139051	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11139052	11139141	1	-	0	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11139052	11139141	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11139142	11139299	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11139300	11140114	0.99	-	2	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11139300	11140114	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11140115	11140218	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11140219	11140456	1	-	0	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11140219	11140456	.	-	.	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	start_codon	11140454	11140456	.	-	0	transcript_id "Ledus.S3G139100.t2"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	transcript	11137940	11140456	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	stop_codon	11137937	11137939	.	-	0	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11137940	11138092	0.82	-	0	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11137940	11138092	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11138093	11138202	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11138203	11138343	0.85	-	0	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11138203	11138343	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11138344	11138760	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11138761	11138797	0.87	-	1	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11138761	11138797	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11138798	11138883	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11138884	11138972	0.88	-	0	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11138884	11138972	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11138973	11139051	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11139052	11139165	0.95	-	0	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11139052	11139165	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11139166	11139299	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11139300	11140114	1	-	2	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11139300	11140114	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	intron	11140115	11140218	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	CDS	11140219	11140456	1	-	0	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	exon	11140219	11140456	.	-	.	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
Ledus.S3	AUGUSTUS	start_codon	11140454	11140456	.	-	0	transcript_id "Ledus.S3G139100.t3"; gene_id "Ledus.S3G139100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3947.t1 is derived from g1383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13693659	13694376	.	+	.	Ledus.S1G136800
Ledus.S1	AUGUSTUS	transcript	13693659	13694376	.	+	.	transcript_id "Ledus.S1G136800.t1"; gene_id "Ledus.S1G136800"
Ledus.S1	AUGUSTUS	start_codon	13693659	13693661	.	+	0	transcript_id "Ledus.S1G136800.t1"; gene_id "Ledus.S1G136800"
Ledus.S1	AUGUSTUS	CDS	13693659	13693839	0.63	+	0	transcript_id "Ledus.S1G136800.t1"; gene_id "Ledus.S1G136800"
Ledus.S1	AUGUSTUS	exon	13693659	13693839	.	+	.	transcript_id "Ledus.S1G136800.t1"; gene_id "Ledus.S1G136800"
Ledus.S1	AUGUSTUS	intron	13693840	13693924	.	+	.	transcript_id "Ledus.S1G136800.t1"; gene_id "Ledus.S1G136800"
Ledus.S1	AUGUSTUS	CDS	13693925	13694376	1	+	2	transcript_id "Ledus.S1G136800.t1"; gene_id "Ledus.S1G136800"
Ledus.S1	AUGUSTUS	exon	13693925	13694376	.	+	.	transcript_id "Ledus.S1G136800.t1"; gene_id "Ledus.S1G136800"
Ledus.S1	AUGUSTUS	stop_codon	13694377	13694379	.	+	0	transcript_id "Ledus.S1G136800.t1"; gene_id "Ledus.S1G136800"
# This transcript jg918.t2 is derived from g7779.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg918.t3 is derived from g7779.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg919.t1 is derived from g7780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6174999	6175607	.	+	.	Ledus.S2G080100
Ledus.S2	AUGUSTUS	transcript	6174999	6175607	.	+	.	transcript_id "Ledus.S2G080100.t1"; gene_id "Ledus.S2G080100"
Ledus.S2	AUGUSTUS	start_codon	6174999	6175001	.	+	0	transcript_id "Ledus.S2G080100.t1"; gene_id "Ledus.S2G080100"
Ledus.S2	AUGUSTUS	CDS	6174999	6175607	0.8	+	0	transcript_id "Ledus.S2G080100.t1"; gene_id "Ledus.S2G080100"
Ledus.S2	AUGUSTUS	exon	6174999	6175607	.	+	.	transcript_id "Ledus.S2G080100.t1"; gene_id "Ledus.S2G080100"
Ledus.S2	AUGUSTUS	stop_codon	6175608	6175610	.	+	0	transcript_id "Ledus.S2G080100.t1"; gene_id "Ledus.S2G080100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10992.t1 is derived from g4610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1032172	1037761	.	-	.	Ledus.S4G014800
Ledus.S4	AUGUSTUS	transcript	1032172	1037761	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	stop_codon	1032169	1032171	.	-	0	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1032172	1032212	0.88	-	2	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1032172	1032212	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1032213	1032303	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1032304	1032499	1	-	0	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1032304	1032499	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1032500	1032578	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1032579	1032725	1	-	0	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1032579	1032725	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1032726	1032810	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1032811	1032955	1	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1032811	1032955	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1032956	1033076	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1033077	1033222	1	-	0	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1033077	1033222	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1033223	1033392	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1033393	1033484	1	-	2	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1033393	1033484	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1033485	1033658	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1033659	1033710	1	-	0	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1033659	1033710	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1033711	1033799	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1033800	1034089	1	-	2	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1033800	1034089	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1034090	1034181	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1034182	1034355	1	-	2	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1034182	1034355	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1034356	1034444	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1034445	1034659	1	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1034445	1034659	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1034660	1034739	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1034740	1034793	1	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1034740	1034793	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1034794	1034883	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1034884	1034952	1	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1034884	1034952	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1034953	1035027	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1035028	1035099	1	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1035028	1035099	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1035100	1035204	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1035205	1035276	1	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1035205	1035276	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1035277	1035356	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1035357	1035428	1	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1035357	1035428	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1035429	1035522	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1035523	1035594	1	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1035523	1035594	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1035595	1035670	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1035671	1035775	0.73	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1035671	1035775	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1035776	1035895	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1035896	1035967	0.9	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1035896	1035967	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1035968	1036069	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1036070	1036141	0.99	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1036070	1036141	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1036142	1036246	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1036247	1036441	0.99	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1036247	1036441	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1036442	1036538	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1036539	1036662	1	-	2	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1036539	1036662	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1036663	1036941	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1036942	1037005	0.77	-	0	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1036942	1037005	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1037006	1037081	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1037082	1037168	0.77	-	0	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1037082	1037168	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1037169	1037370	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1037371	1037473	0.95	-	1	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1037371	1037473	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1037474	1037578	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1037579	1037649	0.76	-	0	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1037579	1037649	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	intron	1037650	1037743	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	CDS	1037744	1037761	0.6	-	0	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	exon	1037744	1037761	.	-	.	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
Ledus.S4	AUGUSTUS	start_codon	1037759	1037761	.	-	0	transcript_id "Ledus.S4G014800.t1"; gene_id "Ledus.S4G014800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7842.t1 is derived from g12513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7419142	7421130	.	+	.	Ledus.S5G062000
Ledus.S5	AUGUSTUS	transcript	7419142	7421130	.	+	.	transcript_id "Ledus.S5G062000.t1"; gene_id "Ledus.S5G062000"
Ledus.S5	AUGUSTUS	start_codon	7419142	7419144	.	+	0	transcript_id "Ledus.S5G062000.t1"; gene_id "Ledus.S5G062000"
Ledus.S5	AUGUSTUS	CDS	7419142	7421130	0.99	+	0	transcript_id "Ledus.S5G062000.t1"; gene_id "Ledus.S5G062000"
Ledus.S5	AUGUSTUS	exon	7419142	7421130	.	+	.	transcript_id "Ledus.S5G062000.t1"; gene_id "Ledus.S5G062000"
Ledus.S5	AUGUSTUS	stop_codon	7421131	7421133	.	+	0	transcript_id "Ledus.S5G062000.t1"; gene_id "Ledus.S5G062000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10362.t1 is derived from g11392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14429378	14430448	.	+	.	Ledus.S3G183900
Ledus.S3	AUGUSTUS	transcript	14429378	14430448	.	+	.	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	start_codon	14429378	14429380	.	+	0	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	CDS	14429378	14429491	1	+	0	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	exon	14429378	14429491	.	+	.	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	intron	14429492	14429594	.	+	.	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	CDS	14429595	14429752	1	+	0	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	exon	14429595	14429752	.	+	.	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	intron	14429753	14429848	.	+	.	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	CDS	14429849	14429965	1	+	1	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	exon	14429849	14429965	.	+	.	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	intron	14429966	14430066	.	+	.	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	CDS	14430067	14430154	1	+	1	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	exon	14430067	14430154	.	+	.	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	intron	14430155	14430298	.	+	.	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	CDS	14430299	14430448	1	+	0	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	exon	14430299	14430448	.	+	.	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
Ledus.S3	AUGUSTUS	stop_codon	14430449	14430451	.	+	0	transcript_id "Ledus.S3G183900.t1"; gene_id "Ledus.S3G183900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7026.t1 is derived from g6557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	880589	880885	.	+	.	Ledus.C7G008700
Ledus.C7	AUGUSTUS	transcript	880589	880885	.	+	.	transcript_id "Ledus.C7G008700.t1"; gene_id "Ledus.C7G008700"
Ledus.C7	AUGUSTUS	start_codon	880589	880591	.	+	0	transcript_id "Ledus.C7G008700.t1"; gene_id "Ledus.C7G008700"
Ledus.C7	AUGUSTUS	CDS	880589	880885	0.42	+	0	transcript_id "Ledus.C7G008700.t1"; gene_id "Ledus.C7G008700"
Ledus.C7	AUGUSTUS	exon	880589	880885	.	+	.	transcript_id "Ledus.C7G008700.t1"; gene_id "Ledus.C7G008700"
Ledus.C7	AUGUSTUS	stop_codon	880886	880888	.	+	0	transcript_id "Ledus.C7G008700.t1"; gene_id "Ledus.C7G008700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8628.t1 is derived from g9658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	846201	846605	.	-	.	Ledus.S3G010500
Ledus.S3	AUGUSTUS	transcript	846201	846605	.	-	.	transcript_id "Ledus.S3G010500.t1"; gene_id "Ledus.S3G010500"
Ledus.S3	AUGUSTUS	stop_codon	846198	846200	.	-	0	transcript_id "Ledus.S3G010500.t1"; gene_id "Ledus.S3G010500"
Ledus.S3	AUGUSTUS	CDS	846201	846324	0.99	-	1	transcript_id "Ledus.S3G010500.t1"; gene_id "Ledus.S3G010500"
Ledus.S3	AUGUSTUS	exon	846201	846324	.	-	.	transcript_id "Ledus.S3G010500.t1"; gene_id "Ledus.S3G010500"
Ledus.S3	AUGUSTUS	intron	846325	846489	.	-	.	transcript_id "Ledus.S3G010500.t1"; gene_id "Ledus.S3G010500"
Ledus.S3	AUGUSTUS	CDS	846490	846605	0.83	-	0	transcript_id "Ledus.S3G010500.t1"; gene_id "Ledus.S3G010500"
Ledus.S3	AUGUSTUS	exon	846490	846605	.	-	.	transcript_id "Ledus.S3G010500.t1"; gene_id "Ledus.S3G010500"
Ledus.S3	AUGUSTUS	start_codon	846603	846605	.	-	0	transcript_id "Ledus.S3G010500.t1"; gene_id "Ledus.S3G010500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6130.t1 is derived from g3573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29084864	29085127	.	+	.	Ledus.S1G355100
Ledus.S1	AUGUSTUS	transcript	29084864	29085127	.	+	.	transcript_id "Ledus.S1G355100.t1"; gene_id "Ledus.S1G355100"
Ledus.S1	AUGUSTUS	start_codon	29084864	29084866	.	+	0	transcript_id "Ledus.S1G355100.t1"; gene_id "Ledus.S1G355100"
Ledus.S1	AUGUSTUS	CDS	29084864	29085127	0.8	+	0	transcript_id "Ledus.S1G355100.t1"; gene_id "Ledus.S1G355100"
Ledus.S1	AUGUSTUS	exon	29084864	29085127	.	+	.	transcript_id "Ledus.S1G355100.t1"; gene_id "Ledus.S1G355100"
Ledus.S1	AUGUSTUS	stop_codon	29085128	29085130	.	+	0	transcript_id "Ledus.S1G355100.t1"; gene_id "Ledus.S1G355100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11329.t1 is derived from g4947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3605232	3608205	.	-	.	Ledus.S4G048500
Ledus.S4	AUGUSTUS	transcript	3605232	3608205	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	stop_codon	3605229	3605231	.	-	0	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	CDS	3605232	3605331	0.82	-	1	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	exon	3605232	3605331	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	intron	3605332	3605434	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	CDS	3605435	3605511	0.78	-	0	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	exon	3605435	3605511	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	intron	3605512	3605595	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	CDS	3605596	3605819	0.6	-	2	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	exon	3605596	3605819	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	intron	3605820	3605903	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	CDS	3605904	3605972	0.86	-	2	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	exon	3605904	3605972	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	intron	3605973	3606058	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	CDS	3606059	3607639	0.48	-	2	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	exon	3606059	3607639	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	intron	3607640	3607726	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	CDS	3607727	3607871	0.98	-	0	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	exon	3607727	3607871	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	intron	3607872	3607998	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	CDS	3607999	3608205	0.92	-	0	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	exon	3607999	3608205	.	-	.	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
Ledus.S4	AUGUSTUS	start_codon	3608203	3608205	.	-	0	transcript_id "Ledus.S4G048500.t1"; gene_id "Ledus.S4G048500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10803.t1 is derived from g11835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17842171	17847224	.	-	.	Ledus.S3G228000
Ledus.S3	AUGUSTUS	transcript	17842171	17847224	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	stop_codon	17842168	17842170	.	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17842171	17842321	1	-	1	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17842171	17842321	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17842322	17842409	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17842410	17842513	1	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17842410	17842513	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17842514	17842609	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17842610	17842679	1	-	1	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17842610	17842679	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17842680	17842789	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17842790	17842833	1	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17842790	17842833	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17842834	17842927	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17842928	17843029	1	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17842928	17843029	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17843030	17843115	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17843116	17843213	1	-	2	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17843116	17843213	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17843214	17843309	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17843310	17843397	1	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17843310	17843397	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17843398	17843482	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17843483	17843569	1	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17843483	17843569	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17843570	17843699	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17843700	17843768	1	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17843700	17843768	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17843769	17843858	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17843859	17843945	0.99	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17843859	17843945	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17843946	17844050	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17844051	17844293	0.9	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17844051	17844293	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17844294	17844392	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17844393	17844459	1	-	1	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17844393	17844459	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17844460	17844552	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17844553	17844611	1	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17844553	17844611	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17844612	17844686	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17844687	17844902	1	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17844687	17844902	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17844903	17845019	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17845020	17845085	1	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17845020	17845085	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17845086	17845220	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17845221	17845402	1	-	2	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17845221	17845402	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17845403	17845791	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17845792	17845885	1	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17845792	17845885	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17845886	17845984	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17845985	17846113	1	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17845985	17846113	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17846114	17846232	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17846233	17846337	1	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17846233	17846337	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17846338	17846485	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17846486	17846579	0.85	-	1	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17846486	17846579	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17846580	17846682	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17846683	17846729	0.99	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17846683	17846729	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	intron	17846730	17846840	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	CDS	17846841	17847224	0.98	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	exon	17846841	17847224	.	-	.	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
Ledus.S3	AUGUSTUS	start_codon	17847222	17847224	.	-	0	transcript_id "Ledus.S3G228000.t1"; gene_id "Ledus.S3G228000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg442.t1 is derived from g7303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2639795	2640721	.	+	.	Ledus.S2G032400
Ledus.S2	AUGUSTUS	transcript	2639795	2640721	.	+	.	transcript_id "Ledus.S2G032400.t1"; gene_id "Ledus.S2G032400"
Ledus.S2	AUGUSTUS	start_codon	2639795	2639797	.	+	0	transcript_id "Ledus.S2G032400.t1"; gene_id "Ledus.S2G032400"
Ledus.S2	AUGUSTUS	CDS	2639795	2639933	0.61	+	0	transcript_id "Ledus.S2G032400.t1"; gene_id "Ledus.S2G032400"
Ledus.S2	AUGUSTUS	exon	2639795	2639933	.	+	.	transcript_id "Ledus.S2G032400.t1"; gene_id "Ledus.S2G032400"
Ledus.S2	AUGUSTUS	intron	2639934	2640072	.	+	.	transcript_id "Ledus.S2G032400.t1"; gene_id "Ledus.S2G032400"
Ledus.S2	AUGUSTUS	CDS	2640073	2640385	0.68	+	2	transcript_id "Ledus.S2G032400.t1"; gene_id "Ledus.S2G032400"
Ledus.S2	AUGUSTUS	exon	2640073	2640385	.	+	.	transcript_id "Ledus.S2G032400.t1"; gene_id "Ledus.S2G032400"
Ledus.S2	AUGUSTUS	intron	2640386	2640666	.	+	.	transcript_id "Ledus.S2G032400.t1"; gene_id "Ledus.S2G032400"
Ledus.S2	AUGUSTUS	CDS	2640667	2640721	0.97	+	1	transcript_id "Ledus.S2G032400.t1"; gene_id "Ledus.S2G032400"
Ledus.S2	AUGUSTUS	exon	2640667	2640721	.	+	.	transcript_id "Ledus.S2G032400.t1"; gene_id "Ledus.S2G032400"
Ledus.S2	AUGUSTUS	stop_codon	2640722	2640724	.	+	0	transcript_id "Ledus.S2G032400.t1"; gene_id "Ledus.S2G032400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4846.t1 is derived from g2284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20114727	20116252	.	+	.	Ledus.S1G226700
Ledus.S1	AUGUSTUS	transcript	20114727	20116252	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	start_codon	20114727	20114729	.	+	0	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	CDS	20114727	20114853	0.56	+	0	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	exon	20114727	20114853	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	intron	20114854	20114941	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	CDS	20114942	20115127	0.99	+	2	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	exon	20114942	20115127	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	intron	20115128	20115279	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	CDS	20115280	20115376	0.99	+	2	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	exon	20115280	20115376	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	intron	20115377	20115455	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	CDS	20115456	20115528	1	+	1	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	exon	20115456	20115528	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	intron	20115529	20115620	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	CDS	20115621	20115722	0.98	+	0	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	exon	20115621	20115722	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	intron	20115723	20115799	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	CDS	20115800	20116049	0.63	+	0	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	exon	20115800	20116049	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	intron	20116050	20116121	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	CDS	20116122	20116252	0.68	+	2	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	exon	20116122	20116252	.	+	.	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
Ledus.S1	AUGUSTUS	stop_codon	20116253	20116255	.	+	0	transcript_id "Ledus.S1G226700.t1"; gene_id "Ledus.S1G226700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9550.t1 is derived from g10580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7748610	7752947	.	-	.	Ledus.S3G102700
Ledus.S3	AUGUSTUS	transcript	7748610	7752947	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	stop_codon	7748607	7748609	.	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7748610	7748729	0.56	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7748610	7748729	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7748730	7748836	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7748837	7749061	0.95	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7748837	7749061	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7749062	7749188	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7749189	7749584	0.86	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7749189	7749584	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7749585	7749687	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7749688	7749847	0.99	-	1	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7749688	7749847	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7749848	7749947	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7749948	7750097	1	-	1	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7749948	7750097	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7750098	7750229	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7750230	7750336	1	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7750230	7750336	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7750337	7750429	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7750430	7750492	1	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7750430	7750492	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7750493	7750683	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7750684	7750869	1	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7750684	7750869	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7750870	7750971	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7750972	7751196	0.98	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7750972	7751196	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7751197	7751342	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7751343	7751471	1	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7751343	7751471	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7751472	7751549	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7751550	7751627	1	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7751550	7751627	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7751628	7751753	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7751754	7751867	0.79	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7751754	7751867	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7751868	7752106	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7752107	7752260	1	-	1	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7752107	7752260	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7752261	7752396	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7752397	7752448	0.93	-	2	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7752397	7752448	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	intron	7752449	7752670	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	CDS	7752671	7752947	0.3	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	exon	7752671	7752947	.	-	.	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
Ledus.S3	AUGUSTUS	start_codon	7752945	7752947	.	-	0	transcript_id "Ledus.S3G102700.t1"; gene_id "Ledus.S3G102700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8731.t1 is derived from g9761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1668485	1670544	.	+	.	Ledus.S3G020800
Ledus.S3	AUGUSTUS	transcript	1668485	1670544	.	+	.	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	start_codon	1668485	1668487	.	+	0	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	CDS	1668485	1668547	0.49	+	0	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	exon	1668485	1668547	.	+	.	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	intron	1668548	1668733	.	+	.	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	CDS	1668734	1668768	1	+	0	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	exon	1668734	1668768	.	+	.	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	intron	1668769	1668968	.	+	.	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	CDS	1668969	1669174	0.62	+	1	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	exon	1668969	1669174	.	+	.	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	intron	1669175	1669351	.	+	.	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	CDS	1669352	1670544	0.53	+	2	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	exon	1669352	1670544	.	+	.	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
Ledus.S3	AUGUSTUS	stop_codon	1670545	1670547	.	+	0	transcript_id "Ledus.S3G020800.t1"; gene_id "Ledus.S3G020800"
# This transcript jg6253.t2 is derived from g3696.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6254.t1 is derived from g3697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29914001	29914873	.	-	.	Ledus.S1G367500
Ledus.S1	AUGUSTUS	transcript	29914001	29914873	.	-	.	transcript_id "Ledus.S1G367500.t1"; gene_id "Ledus.S1G367500"
Ledus.S1	AUGUSTUS	stop_codon	29913998	29914000	.	-	0	transcript_id "Ledus.S1G367500.t1"; gene_id "Ledus.S1G367500"
Ledus.S1	AUGUSTUS	CDS	29914001	29914556	1	-	1	transcript_id "Ledus.S1G367500.t1"; gene_id "Ledus.S1G367500"
Ledus.S1	AUGUSTUS	exon	29914001	29914556	.	-	.	transcript_id "Ledus.S1G367500.t1"; gene_id "Ledus.S1G367500"
Ledus.S1	AUGUSTUS	intron	29914557	29914643	.	-	.	transcript_id "Ledus.S1G367500.t1"; gene_id "Ledus.S1G367500"
Ledus.S1	AUGUSTUS	CDS	29914644	29914873	0.63	-	0	transcript_id "Ledus.S1G367500.t1"; gene_id "Ledus.S1G367500"
Ledus.S1	AUGUSTUS	exon	29914644	29914873	.	-	.	transcript_id "Ledus.S1G367500.t1"; gene_id "Ledus.S1G367500"
Ledus.S1	AUGUSTUS	start_codon	29914871	29914873	.	-	0	transcript_id "Ledus.S1G367500.t1"; gene_id "Ledus.S1G367500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6.t1 is derived from g11869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C46	AUGUSTUS	gene	21886	22191	.	+	.	Ledus.C46G000200
Ledus.C46	AUGUSTUS	transcript	21886	22191	.	+	.	transcript_id "Ledus.C46G000200.t1"; gene_id "Ledus.C46G000200"
Ledus.C46	AUGUSTUS	start_codon	21886	21888	.	+	0	transcript_id "Ledus.C46G000200.t1"; gene_id "Ledus.C46G000200"
Ledus.C46	AUGUSTUS	CDS	21886	22191	0.53	+	0	transcript_id "Ledus.C46G000200.t1"; gene_id "Ledus.C46G000200"
Ledus.C46	AUGUSTUS	exon	21886	22191	.	+	.	transcript_id "Ledus.C46G000200.t1"; gene_id "Ledus.C46G000200"
Ledus.C46	AUGUSTUS	stop_codon	22192	22194	.	+	0	transcript_id "Ledus.C46G000200.t1"; gene_id "Ledus.C46G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10913.t1 is derived from g4531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	528298	528855	.	+	.	Ledus.S4G006900
Ledus.S4	AUGUSTUS	transcript	528298	528855	.	+	.	transcript_id "Ledus.S4G006900.t1"; gene_id "Ledus.S4G006900"
Ledus.S4	AUGUSTUS	start_codon	528298	528300	.	+	0	transcript_id "Ledus.S4G006900.t1"; gene_id "Ledus.S4G006900"
Ledus.S4	AUGUSTUS	CDS	528298	528855	0.59	+	0	transcript_id "Ledus.S4G006900.t1"; gene_id "Ledus.S4G006900"
Ledus.S4	AUGUSTUS	exon	528298	528855	.	+	.	transcript_id "Ledus.S4G006900.t1"; gene_id "Ledus.S4G006900"
Ledus.S4	AUGUSTUS	stop_codon	528856	528858	.	+	0	transcript_id "Ledus.S4G006900.t1"; gene_id "Ledus.S4G006900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3376.t1 is derived from g811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7952838	7954276	.	+	.	Ledus.S1G079700
Ledus.S1	AUGUSTUS	transcript	7952838	7954276	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	start_codon	7952838	7952840	.	+	0	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	CDS	7952838	7952870	1	+	0	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	exon	7952838	7952870	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	intron	7952871	7953126	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	CDS	7953127	7953163	1	+	0	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	exon	7953127	7953163	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	intron	7953164	7953280	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	CDS	7953281	7953366	0.99	+	2	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	exon	7953281	7953366	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	intron	7953367	7953474	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	CDS	7953475	7953570	1	+	0	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	exon	7953475	7953570	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	intron	7953571	7953677	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	CDS	7953678	7953816	0.66	+	0	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	exon	7953678	7953816	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	intron	7953817	7953962	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	CDS	7953963	7954125	1	+	2	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	exon	7953963	7954125	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	intron	7954126	7954203	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	CDS	7954204	7954276	1	+	1	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	exon	7954204	7954276	.	+	.	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
Ledus.S1	AUGUSTUS	stop_codon	7954277	7954279	.	+	0	transcript_id "Ledus.S1G079700.t1"; gene_id "Ledus.S1G079700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg326.t1 is derived from g7187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1677507	1682174	.	-	.	Ledus.S2G020800
Ledus.S2	AUGUSTUS	transcript	1677507	1682174	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	stop_codon	1677504	1677506	.	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1677507	1677621	1	-	1	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1677507	1677621	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1677622	1677701	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1677702	1677796	1	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1677702	1677796	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1677797	1677878	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1677879	1677938	1	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1677879	1677938	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1677939	1678036	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1678037	1678145	1	-	1	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1678037	1678145	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1678146	1678237	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1678238	1678401	1	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1678238	1678401	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1678402	1678486	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1678487	1678606	1	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1678487	1678606	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1678607	1678702	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1678703	1678780	1	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1678703	1678780	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1678781	1678879	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1678880	1678948	1	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1678880	1678948	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1678949	1679026	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1679027	1679092	1	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1679027	1679092	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1679093	1679207	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1679208	1679286	1	-	1	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1679208	1679286	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1679287	1679368	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1679369	1679469	1	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1679369	1679469	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1679470	1679552	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1679553	1679687	1	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1679553	1679687	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1679688	1679757	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1679758	1679820	0.92	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1679758	1679820	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1679821	1679903	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1679904	1679982	1	-	1	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1679904	1679982	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1679983	1680081	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1680082	1680176	0.97	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1680082	1680176	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1680177	1680278	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1680279	1680392	0.99	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1680279	1680392	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1680393	1680481	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1680482	1680514	0.95	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1680482	1680514	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1680515	1680632	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1680633	1680738	0.95	-	1	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1680633	1680738	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1680739	1680833	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1680834	1681044	0.99	-	2	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1680834	1681044	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1681045	1681222	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1681223	1681344	1	-	1	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1681223	1681344	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1681345	1681445	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1681446	1681480	1	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1681446	1681480	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1681481	1681663	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1681664	1681752	1	-	2	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1681664	1681752	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	intron	1681753	1681927	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	CDS	1681928	1682174	1	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	exon	1681928	1682174	.	-	.	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
Ledus.S2	AUGUSTUS	start_codon	1682172	1682174	.	-	0	transcript_id "Ledus.S2G020800.t1"; gene_id "Ledus.S2G020800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12693.t1 is derived from g6315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13927605	13935985	.	-	.	Ledus.S4G184900
Ledus.S4	AUGUSTUS	transcript	13927605	13935985	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	stop_codon	13927602	13927604	.	-	0	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13927605	13927803	1	-	1	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13927605	13927803	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13927804	13927884	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13927885	13927982	1	-	0	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13927885	13927982	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13927983	13928156	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13928157	13928305	1	-	2	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13928157	13928305	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13928306	13928439	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13928440	13928563	1	-	0	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13928440	13928563	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13928564	13928713	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13928714	13931568	0.97	-	2	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13928714	13931568	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13931569	13931693	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13931694	13931732	1	-	2	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13931694	13931732	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13931733	13931883	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13931884	13932067	1	-	0	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13931884	13932067	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13932068	13932166	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13932167	13932286	1	-	0	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13932167	13932286	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13932287	13932395	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13932396	13932531	0.99	-	1	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13932396	13932531	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13932532	13932624	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13932625	13932688	1	-	2	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13932625	13932688	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13932689	13932768	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13932769	13932859	1	-	0	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13932769	13932859	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13932860	13933035	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13933036	13933697	1	-	2	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13933036	13933697	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13933698	13933795	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13933796	13933889	1	-	0	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13933796	13933889	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13933890	13933975	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13933976	13934017	1	-	0	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13933976	13934017	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13934018	13934222	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13934223	13934328	0.35	-	1	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13934223	13934328	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13934329	13934457	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13934458	13934639	0.34	-	0	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13934458	13934639	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13934640	13934749	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13934750	13934995	0.7	-	0	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13934750	13934995	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13934996	13935425	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13935426	13935471	1	-	1	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13935426	13935471	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	intron	13935472	13935911	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	CDS	13935912	13935985	0.89	-	0	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	exon	13935912	13935985	.	-	.	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
Ledus.S4	AUGUSTUS	start_codon	13935983	13935985	.	-	0	transcript_id "Ledus.S4G184900.t1"; gene_id "Ledus.S4G184900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7600.t1 is derived from g12271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4298796	4300536	.	-	.	Ledus.S5G037800
Ledus.S5	AUGUSTUS	transcript	4298796	4300536	.	-	.	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	stop_codon	4298793	4298795	.	-	0	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	CDS	4298796	4299040	0.27	-	2	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	exon	4298796	4299040	.	-	.	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	intron	4299041	4299215	.	-	.	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	CDS	4299216	4299288	0.54	-	0	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	exon	4299216	4299288	.	-	.	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	intron	4299289	4299449	.	-	.	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	CDS	4299450	4299504	0.64	-	1	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	exon	4299450	4299504	.	-	.	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	intron	4299505	4299720	.	-	.	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	CDS	4299721	4299878	0.76	-	0	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	exon	4299721	4299878	.	-	.	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	intron	4299879	4299949	.	-	.	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	CDS	4299950	4300363	0.43	-	0	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	exon	4299950	4300363	.	-	.	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	intron	4300364	4300440	.	-	.	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	CDS	4300441	4300536	0.28	-	0	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	exon	4300441	4300536	.	-	.	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
Ledus.S5	AUGUSTUS	start_codon	4300534	4300536	.	-	0	transcript_id "Ledus.S5G037800.t1"; gene_id "Ledus.S5G037800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12289.t1 is derived from g5909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10901875	10902459	.	-	.	Ledus.S4G144500
Ledus.S4	AUGUSTUS	transcript	10901875	10902459	.	-	.	transcript_id "Ledus.S4G144500.t1"; gene_id "Ledus.S4G144500"
Ledus.S4	AUGUSTUS	stop_codon	10901872	10901874	.	-	0	transcript_id "Ledus.S4G144500.t1"; gene_id "Ledus.S4G144500"
Ledus.S4	AUGUSTUS	CDS	10901875	10902459	0.75	-	0	transcript_id "Ledus.S4G144500.t1"; gene_id "Ledus.S4G144500"
Ledus.S4	AUGUSTUS	exon	10901875	10902459	.	-	.	transcript_id "Ledus.S4G144500.t1"; gene_id "Ledus.S4G144500"
Ledus.S4	AUGUSTUS	start_codon	10902457	10902459	.	-	0	transcript_id "Ledus.S4G144500.t1"; gene_id "Ledus.S4G144500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9240.t1 is derived from g10270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5575939	5577341	.	-	.	Ledus.S3G071700
Ledus.S3	AUGUSTUS	transcript	5575939	5577341	.	-	.	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	stop_codon	5575936	5575938	.	-	0	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	CDS	5575939	5576163	1	-	0	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	exon	5575939	5576163	.	-	.	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	intron	5576164	5576261	.	-	.	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	CDS	5576262	5576557	1	-	2	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	exon	5576262	5576557	.	-	.	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	intron	5576558	5576633	.	-	.	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	CDS	5576634	5576872	1	-	1	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	exon	5576634	5576872	.	-	.	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	intron	5576873	5576967	.	-	.	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	CDS	5576968	5577341	0.62	-	0	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	exon	5576968	5577341	.	-	.	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
Ledus.S3	AUGUSTUS	start_codon	5577339	5577341	.	-	0	transcript_id "Ledus.S3G071700.t1"; gene_id "Ledus.S3G071700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1254.t1 is derived from g8115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8902483	8904875	.	-	.	Ledus.S2G113600
Ledus.S2	AUGUSTUS	transcript	8902483	8904875	.	-	.	transcript_id "Ledus.S2G113600.t1"; gene_id "Ledus.S2G113600"
Ledus.S2	AUGUSTUS	stop_codon	8902480	8902482	.	-	0	transcript_id "Ledus.S2G113600.t1"; gene_id "Ledus.S2G113600"
Ledus.S2	AUGUSTUS	CDS	8902483	8903706	0.41	-	0	transcript_id "Ledus.S2G113600.t1"; gene_id "Ledus.S2G113600"
Ledus.S2	AUGUSTUS	exon	8902483	8903706	.	-	.	transcript_id "Ledus.S2G113600.t1"; gene_id "Ledus.S2G113600"
Ledus.S2	AUGUSTUS	intron	8903707	8903985	.	-	.	transcript_id "Ledus.S2G113600.t1"; gene_id "Ledus.S2G113600"
Ledus.S2	AUGUSTUS	CDS	8903986	8904148	0.06	-	1	transcript_id "Ledus.S2G113600.t1"; gene_id "Ledus.S2G113600"
Ledus.S2	AUGUSTUS	exon	8903986	8904148	.	-	.	transcript_id "Ledus.S2G113600.t1"; gene_id "Ledus.S2G113600"
Ledus.S2	AUGUSTUS	intron	8904149	8904762	.	-	.	transcript_id "Ledus.S2G113600.t1"; gene_id "Ledus.S2G113600"
Ledus.S2	AUGUSTUS	CDS	8904763	8904875	0.02	-	0	transcript_id "Ledus.S2G113600.t1"; gene_id "Ledus.S2G113600"
Ledus.S2	AUGUSTUS	exon	8904763	8904875	.	-	.	transcript_id "Ledus.S2G113600.t1"; gene_id "Ledus.S2G113600"
Ledus.S2	AUGUSTUS	start_codon	8904873	8904875	.	-	0	transcript_id "Ledus.S2G113600.t1"; gene_id "Ledus.S2G113600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12029.t1 is derived from g5648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8975758	8977517	.	+	.	Ledus.S4G118500
Ledus.S4	AUGUSTUS	transcript	8975758	8977517	.	+	.	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	start_codon	8975758	8975760	.	+	0	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	CDS	8975758	8976262	0.63	+	0	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	exon	8975758	8976262	.	+	.	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	intron	8976263	8976332	.	+	.	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	CDS	8976333	8976745	1	+	2	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	exon	8976333	8976745	.	+	.	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	intron	8976746	8976824	.	+	.	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	CDS	8976825	8976995	1	+	0	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	exon	8976825	8976995	.	+	.	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	intron	8976996	8977070	.	+	.	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	CDS	8977071	8977517	1	+	0	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	exon	8977071	8977517	.	+	.	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
Ledus.S4	AUGUSTUS	stop_codon	8977518	8977520	.	+	0	transcript_id "Ledus.S4G118500.t1"; gene_id "Ledus.S4G118500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6809.t1 is derived from g4253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34400695	34401213	.	+	.	Ledus.S1G423000
Ledus.S1	AUGUSTUS	transcript	34400695	34401213	.	+	.	transcript_id "Ledus.S1G423000.t1"; gene_id "Ledus.S1G423000"
Ledus.S1	AUGUSTUS	start_codon	34400695	34400697	.	+	0	transcript_id "Ledus.S1G423000.t1"; gene_id "Ledus.S1G423000"
Ledus.S1	AUGUSTUS	CDS	34400695	34401213	0.83	+	0	transcript_id "Ledus.S1G423000.t1"; gene_id "Ledus.S1G423000"
Ledus.S1	AUGUSTUS	exon	34400695	34401213	.	+	.	transcript_id "Ledus.S1G423000.t1"; gene_id "Ledus.S1G423000"
Ledus.S1	AUGUSTUS	stop_codon	34401214	34401216	.	+	0	transcript_id "Ledus.S1G423000.t1"; gene_id "Ledus.S1G423000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3719.t1 is derived from g1155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11146492	11146689	.	+	.	Ledus.S1G114000
Ledus.S1	AUGUSTUS	transcript	11146492	11146689	.	+	.	transcript_id "Ledus.S1G114000.t1"; gene_id "Ledus.S1G114000"
Ledus.S1	AUGUSTUS	start_codon	11146492	11146494	.	+	0	transcript_id "Ledus.S1G114000.t1"; gene_id "Ledus.S1G114000"
Ledus.S1	AUGUSTUS	CDS	11146492	11146689	0.98	+	0	transcript_id "Ledus.S1G114000.t1"; gene_id "Ledus.S1G114000"
Ledus.S1	AUGUSTUS	exon	11146492	11146689	.	+	.	transcript_id "Ledus.S1G114000.t1"; gene_id "Ledus.S1G114000"
Ledus.S1	AUGUSTUS	stop_codon	11146690	11146692	.	+	0	transcript_id "Ledus.S1G114000.t1"; gene_id "Ledus.S1G114000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3976.t1 is derived from g1412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13843793	13846735	.	-	.	Ledus.S1G139700
Ledus.S1	AUGUSTUS	transcript	13843793	13846735	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	stop_codon	13843790	13843792	.	-	0	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	CDS	13843793	13843978	0.44	-	0	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	exon	13843793	13843978	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	intron	13843979	13844211	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	CDS	13844212	13844352	0.65	-	0	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	exon	13844212	13844352	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	intron	13844353	13844454	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	CDS	13844455	13844541	0.98	-	0	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	exon	13844455	13844541	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	intron	13844542	13844635	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	CDS	13844636	13844754	0.98	-	2	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	exon	13844636	13844754	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	intron	13844755	13844871	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	CDS	13844872	13845110	0.8	-	1	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	exon	13844872	13845110	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	intron	13845111	13845205	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	CDS	13845206	13845262	1	-	1	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	exon	13845206	13845262	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	intron	13845263	13845375	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	CDS	13845376	13845462	0.98	-	1	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	exon	13845376	13845462	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	intron	13845463	13845589	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	CDS	13845590	13846134	0.93	-	0	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	exon	13845590	13846134	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	intron	13846135	13846207	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	CDS	13846208	13846735	1	-	0	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	exon	13846208	13846735	.	-	.	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
Ledus.S1	AUGUSTUS	start_codon	13846733	13846735	.	-	0	transcript_id "Ledus.S1G139700.t1"; gene_id "Ledus.S1G139700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4504.t1 is derived from g1940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17404518	17405281	.	-	.	Ledus.S1G192500
Ledus.S1	AUGUSTUS	transcript	17404518	17405281	.	-	.	transcript_id "Ledus.S1G192500.t1"; gene_id "Ledus.S1G192500"
Ledus.S1	AUGUSTUS	stop_codon	17404515	17404517	.	-	0	transcript_id "Ledus.S1G192500.t1"; gene_id "Ledus.S1G192500"
Ledus.S1	AUGUSTUS	CDS	17404518	17404563	0.46	-	1	transcript_id "Ledus.S1G192500.t1"; gene_id "Ledus.S1G192500"
Ledus.S1	AUGUSTUS	exon	17404518	17404563	.	-	.	transcript_id "Ledus.S1G192500.t1"; gene_id "Ledus.S1G192500"
Ledus.S1	AUGUSTUS	intron	17404564	17404862	.	-	.	transcript_id "Ledus.S1G192500.t1"; gene_id "Ledus.S1G192500"
Ledus.S1	AUGUSTUS	CDS	17404863	17404911	0.88	-	2	transcript_id "Ledus.S1G192500.t1"; gene_id "Ledus.S1G192500"
Ledus.S1	AUGUSTUS	exon	17404863	17404911	.	-	.	transcript_id "Ledus.S1G192500.t1"; gene_id "Ledus.S1G192500"
Ledus.S1	AUGUSTUS	intron	17404912	17405169	.	-	.	transcript_id "Ledus.S1G192500.t1"; gene_id "Ledus.S1G192500"
Ledus.S1	AUGUSTUS	CDS	17405170	17405281	0.52	-	0	transcript_id "Ledus.S1G192500.t1"; gene_id "Ledus.S1G192500"
Ledus.S1	AUGUSTUS	exon	17405170	17405281	.	-	.	transcript_id "Ledus.S1G192500.t1"; gene_id "Ledus.S1G192500"
Ledus.S1	AUGUSTUS	start_codon	17405279	17405281	.	-	0	transcript_id "Ledus.S1G192500.t1"; gene_id "Ledus.S1G192500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3649.t1 is derived from g1085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10379104	10380132	.	-	.	Ledus.S1G107000
Ledus.S1	AUGUSTUS	transcript	10379104	10380132	.	-	.	transcript_id "Ledus.S1G107000.t1"; gene_id "Ledus.S1G107000"
Ledus.S1	AUGUSTUS	stop_codon	10379101	10379103	.	-	0	transcript_id "Ledus.S1G107000.t1"; gene_id "Ledus.S1G107000"
Ledus.S1	AUGUSTUS	CDS	10379104	10380132	0.52	-	0	transcript_id "Ledus.S1G107000.t1"; gene_id "Ledus.S1G107000"
Ledus.S1	AUGUSTUS	exon	10379104	10380132	.	-	.	transcript_id "Ledus.S1G107000.t1"; gene_id "Ledus.S1G107000"
Ledus.S1	AUGUSTUS	start_codon	10380130	10380132	.	-	0	transcript_id "Ledus.S1G107000.t1"; gene_id "Ledus.S1G107000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9881.t1 is derived from g10911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10909897	10911361	.	-	.	Ledus.S3G135800
Ledus.S3	AUGUSTUS	transcript	10909897	10911361	.	-	.	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	stop_codon	10909894	10909896	.	-	0	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	CDS	10909897	10909952	0.63	-	2	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	exon	10909897	10909952	.	-	.	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	intron	10909953	10910031	.	-	.	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	CDS	10910032	10910135	0.89	-	1	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	exon	10910032	10910135	.	-	.	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	intron	10910136	10910284	.	-	.	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	CDS	10910285	10910380	0.76	-	1	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	exon	10910285	10910380	.	-	.	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	intron	10910381	10910547	.	-	.	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	CDS	10910548	10910598	0.67	-	1	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	exon	10910548	10910598	.	-	.	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	intron	10910599	10911155	.	-	.	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	CDS	10911156	10911361	0.23	-	0	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	exon	10911156	10911361	.	-	.	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
Ledus.S3	AUGUSTUS	start_codon	10911359	10911361	.	-	0	transcript_id "Ledus.S3G135800.t1"; gene_id "Ledus.S3G135800"
# This transcript jg1997.t2 is derived from g8860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1998.t1 is derived from g8861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14118532	14121560	.	-	.	Ledus.S2G188000
Ledus.S2	AUGUSTUS	transcript	14118532	14121560	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	stop_codon	14118529	14118531	.	-	0	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	CDS	14118532	14118771	0.99	-	0	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	exon	14118532	14118771	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	intron	14118772	14118869	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	CDS	14118870	14119055	0.99	-	0	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	exon	14118870	14119055	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	intron	14119056	14119146	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	CDS	14119147	14119347	1	-	0	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	exon	14119147	14119347	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	intron	14119348	14119491	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	CDS	14119492	14119611	1	-	0	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	exon	14119492	14119611	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	intron	14119612	14119697	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	CDS	14119698	14119853	1	-	0	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	exon	14119698	14119853	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	intron	14119854	14119972	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	CDS	14119973	14120659	1	-	0	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	exon	14119973	14120659	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	intron	14120660	14120752	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	CDS	14120753	14120826	1	-	2	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	exon	14120753	14120826	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	intron	14120827	14120916	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	CDS	14120917	14121028	1	-	0	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	exon	14120917	14121028	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	intron	14121029	14121112	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	CDS	14121113	14121226	1	-	0	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	exon	14121113	14121226	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	intron	14121227	14121482	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	CDS	14121483	14121560	1	-	0	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	exon	14121483	14121560	.	-	.	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
Ledus.S2	AUGUSTUS	start_codon	14121558	14121560	.	-	0	transcript_id "Ledus.S2G188000.t1"; gene_id "Ledus.S2G188000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1121.t1 is derived from g7982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7672469	7675032	.	-	.	Ledus.S2G100300
Ledus.S2	AUGUSTUS	transcript	7672469	7675032	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	stop_codon	7672466	7672468	.	-	0	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	CDS	7672469	7672531	1	-	0	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	exon	7672469	7672531	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	intron	7672532	7672623	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	CDS	7672624	7672849	0.66	-	1	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	exon	7672624	7672849	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	intron	7672850	7672972	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	CDS	7672973	7673208	1	-	0	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	exon	7672973	7673208	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	intron	7673209	7673295	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	CDS	7673296	7673546	1	-	2	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	exon	7673296	7673546	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	intron	7673547	7673648	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	CDS	7673649	7673721	0.99	-	0	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	exon	7673649	7673721	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	intron	7673722	7673789	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	CDS	7673790	7673924	1	-	0	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	exon	7673790	7673924	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	intron	7673925	7674016	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	CDS	7674017	7674052	1	-	0	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	exon	7674017	7674052	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	intron	7674053	7674145	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	CDS	7674146	7674239	1	-	1	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	exon	7674146	7674239	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	intron	7674240	7674328	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	CDS	7674329	7674524	1	-	2	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	exon	7674329	7674524	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	intron	7674525	7674606	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	CDS	7674607	7674802	1	-	0	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	exon	7674607	7674802	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	intron	7674803	7674891	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	CDS	7674892	7675032	0.99	-	0	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	exon	7674892	7675032	.	-	.	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
Ledus.S2	AUGUSTUS	start_codon	7675030	7675032	.	-	0	transcript_id "Ledus.S2G100300.t1"; gene_id "Ledus.S2G100300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10095.t1 is derived from g11125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12610110	12611082	.	-	.	Ledus.S3G157200
Ledus.S3	AUGUSTUS	transcript	12610110	12611082	.	-	.	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	stop_codon	12610107	12610109	.	-	0	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	CDS	12610110	12610114	1	-	2	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	exon	12610110	12610114	.	-	.	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	intron	12610115	12610210	.	-	.	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	CDS	12610211	12610432	0.72	-	2	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	exon	12610211	12610432	.	-	.	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	intron	12610433	12610516	.	-	.	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	CDS	12610517	12610656	0.99	-	1	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	exon	12610517	12610656	.	-	.	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	intron	12610657	12610729	.	-	.	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	CDS	12610730	12610835	0.88	-	2	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	exon	12610730	12610835	.	-	.	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	intron	12610836	12610952	.	-	.	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	CDS	12610953	12611082	0.5	-	0	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	exon	12610953	12611082	.	-	.	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
Ledus.S3	AUGUSTUS	start_codon	12611080	12611082	.	-	0	transcript_id "Ledus.S3G157200.t1"; gene_id "Ledus.S3G157200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2175.t1 is derived from g9038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15731448	15733923	.	-	.	Ledus.S2G205700
Ledus.S2	AUGUSTUS	transcript	15731448	15733923	.	-	.	transcript_id "Ledus.S2G205700.t1"; gene_id "Ledus.S2G205700"
Ledus.S2	AUGUSTUS	stop_codon	15731445	15731447	.	-	0	transcript_id "Ledus.S2G205700.t1"; gene_id "Ledus.S2G205700"
Ledus.S2	AUGUSTUS	CDS	15731448	15733744	0.76	-	2	transcript_id "Ledus.S2G205700.t1"; gene_id "Ledus.S2G205700"
Ledus.S2	AUGUSTUS	exon	15731448	15733744	.	-	.	transcript_id "Ledus.S2G205700.t1"; gene_id "Ledus.S2G205700"
Ledus.S2	AUGUSTUS	intron	15733745	15733838	.	-	.	transcript_id "Ledus.S2G205700.t1"; gene_id "Ledus.S2G205700"
Ledus.S2	AUGUSTUS	CDS	15733839	15733923	0.98	-	0	transcript_id "Ledus.S2G205700.t1"; gene_id "Ledus.S2G205700"
Ledus.S2	AUGUSTUS	exon	15733839	15733923	.	-	.	transcript_id "Ledus.S2G205700.t1"; gene_id "Ledus.S2G205700"
Ledus.S2	AUGUSTUS	start_codon	15733921	15733923	.	-	0	transcript_id "Ledus.S2G205700.t1"; gene_id "Ledus.S2G205700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg406.t1 is derived from g7267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2237949	2240183	.	+	.	Ledus.S2G028800
Ledus.S2	AUGUSTUS	transcript	2237949	2240183	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	start_codon	2237949	2237951	.	+	0	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	CDS	2237949	2238167	1	+	0	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	exon	2237949	2238167	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	intron	2238168	2238384	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	CDS	2238385	2238524	1	+	0	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	exon	2238385	2238524	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	intron	2238525	2238635	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	CDS	2238636	2238720	1	+	1	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	exon	2238636	2238720	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	intron	2238721	2238901	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	CDS	2238902	2238994	1	+	0	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	exon	2238902	2238994	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	intron	2238995	2239089	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	CDS	2239090	2239286	0.3	+	0	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	exon	2239090	2239286	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	intron	2239287	2239391	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	CDS	2239392	2239497	0.73	+	1	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	exon	2239392	2239497	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	intron	2239498	2239688	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	CDS	2239689	2239832	1	+	0	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	exon	2239689	2239832	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	intron	2239833	2239928	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	CDS	2239929	2239955	0.96	+	0	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	exon	2239929	2239955	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	intron	2239956	2240060	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	CDS	2240061	2240075	0.95	+	0	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	exon	2240061	2240075	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	intron	2240076	2240168	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	CDS	2240169	2240183	0.95	+	0	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	exon	2240169	2240183	.	+	.	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
Ledus.S2	AUGUSTUS	stop_codon	2240184	2240186	.	+	0	transcript_id "Ledus.S2G028800.t1"; gene_id "Ledus.S2G028800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11602.t1 is derived from g5220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5473504	5474621	.	-	.	Ledus.S4G075800
Ledus.S4	AUGUSTUS	transcript	5473504	5474621	.	-	.	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	stop_codon	5473501	5473503	.	-	0	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	CDS	5473504	5473535	0.59	-	2	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	exon	5473504	5473535	.	-	.	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	intron	5473536	5473627	.	-	.	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	CDS	5473628	5473698	0.27	-	1	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	exon	5473628	5473698	.	-	.	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	intron	5473699	5473937	.	-	.	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	CDS	5473938	5474010	0.15	-	2	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	exon	5473938	5474010	.	-	.	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	intron	5474011	5474141	.	-	.	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	CDS	5474142	5474154	0.79	-	0	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	exon	5474142	5474154	.	-	.	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	intron	5474155	5474226	.	-	.	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	CDS	5474227	5474310	1	-	0	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	exon	5474227	5474310	.	-	.	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	intron	5474311	5474549	.	-	.	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	CDS	5474550	5474621	0.69	-	0	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	exon	5474550	5474621	.	-	.	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
Ledus.S4	AUGUSTUS	start_codon	5474619	5474621	.	-	0	transcript_id "Ledus.S4G075800.t1"; gene_id "Ledus.S4G075800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11221.t1 is derived from g4839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2801420	2802838	.	+	.	Ledus.S4G037700
Ledus.S4	AUGUSTUS	transcript	2801420	2802838	.	+	.	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	start_codon	2801420	2801422	.	+	0	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	CDS	2801420	2801669	0.98	+	0	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	exon	2801420	2801669	.	+	.	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	intron	2801670	2801755	.	+	.	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	CDS	2801756	2801883	1	+	2	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	exon	2801756	2801883	.	+	.	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	intron	2801884	2801974	.	+	.	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	CDS	2801975	2802156	1	+	0	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	exon	2801975	2802156	.	+	.	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	intron	2802157	2802261	.	+	.	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	CDS	2802262	2802361	1	+	1	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	exon	2802262	2802361	.	+	.	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	intron	2802362	2802445	.	+	.	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	CDS	2802446	2802563	0.69	+	0	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	exon	2802446	2802563	.	+	.	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	intron	2802564	2802782	.	+	.	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	CDS	2802783	2802838	0.71	+	2	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	exon	2802783	2802838	.	+	.	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
Ledus.S4	AUGUSTUS	stop_codon	2802839	2802841	.	+	0	transcript_id "Ledus.S4G037700.t1"; gene_id "Ledus.S4G037700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2418.t1 is derived from g9281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18018918	18020549	.	+	.	Ledus.S2G230000
Ledus.S2	AUGUSTUS	transcript	18018918	18020549	.	+	.	transcript_id "Ledus.S2G230000.t1"; gene_id "Ledus.S2G230000"
Ledus.S2	AUGUSTUS	start_codon	18018918	18018920	.	+	0	transcript_id "Ledus.S2G230000.t1"; gene_id "Ledus.S2G230000"
Ledus.S2	AUGUSTUS	CDS	18018918	18019044	0.8	+	0	transcript_id "Ledus.S2G230000.t1"; gene_id "Ledus.S2G230000"
Ledus.S2	AUGUSTUS	exon	18018918	18019044	.	+	.	transcript_id "Ledus.S2G230000.t1"; gene_id "Ledus.S2G230000"
Ledus.S2	AUGUSTUS	intron	18019045	18019131	.	+	.	transcript_id "Ledus.S2G230000.t1"; gene_id "Ledus.S2G230000"
Ledus.S2	AUGUSTUS	CDS	18019132	18020549	0.96	+	2	transcript_id "Ledus.S2G230000.t1"; gene_id "Ledus.S2G230000"
Ledus.S2	AUGUSTUS	exon	18019132	18020549	.	+	.	transcript_id "Ledus.S2G230000.t1"; gene_id "Ledus.S2G230000"
Ledus.S2	AUGUSTUS	stop_codon	18020550	18020552	.	+	0	transcript_id "Ledus.S2G230000.t1"; gene_id "Ledus.S2G230000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6909.t1 is derived from g4353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35125842	35128253	.	-	.	Ledus.S1G433000
Ledus.S1	AUGUSTUS	transcript	35125842	35128253	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	stop_codon	35125839	35125841	.	-	0	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	CDS	35125842	35126312	1	-	0	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	exon	35125842	35126312	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	intron	35126313	35126449	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	CDS	35126450	35126863	1	-	0	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	exon	35126450	35126863	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	intron	35126864	35126959	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	CDS	35126960	35127104	1	-	1	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	exon	35126960	35127104	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	intron	35127105	35127209	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	CDS	35127210	35127268	1	-	0	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	exon	35127210	35127268	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	intron	35127269	35127349	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	CDS	35127350	35127358	1	-	0	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	exon	35127350	35127358	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	intron	35127359	35127457	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	CDS	35127458	35127570	1	-	2	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	exon	35127458	35127570	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	intron	35127571	35127668	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	CDS	35127669	35127701	1	-	2	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	exon	35127669	35127701	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	intron	35127702	35127806	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	CDS	35127807	35128082	1	-	2	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	exon	35127807	35128082	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	intron	35128083	35128171	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	CDS	35128172	35128253	1	-	0	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	exon	35128172	35128253	.	-	.	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
Ledus.S1	AUGUSTUS	start_codon	35128251	35128253	.	-	0	transcript_id "Ledus.S1G433000.t1"; gene_id "Ledus.S1G433000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4602.t1 is derived from g2039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18048446	18049414	.	+	.	Ledus.S1G202300
Ledus.S1	AUGUSTUS	transcript	18048446	18049414	.	+	.	transcript_id "Ledus.S1G202300.t1"; gene_id "Ledus.S1G202300"
Ledus.S1	AUGUSTUS	start_codon	18048446	18048448	.	+	0	transcript_id "Ledus.S1G202300.t1"; gene_id "Ledus.S1G202300"
Ledus.S1	AUGUSTUS	CDS	18048446	18049186	0.77	+	0	transcript_id "Ledus.S1G202300.t1"; gene_id "Ledus.S1G202300"
Ledus.S1	AUGUSTUS	exon	18048446	18049186	.	+	.	transcript_id "Ledus.S1G202300.t1"; gene_id "Ledus.S1G202300"
Ledus.S1	AUGUSTUS	intron	18049187	18049279	.	+	.	transcript_id "Ledus.S1G202300.t1"; gene_id "Ledus.S1G202300"
Ledus.S1	AUGUSTUS	CDS	18049280	18049414	1	+	0	transcript_id "Ledus.S1G202300.t1"; gene_id "Ledus.S1G202300"
Ledus.S1	AUGUSTUS	exon	18049280	18049414	.	+	.	transcript_id "Ledus.S1G202300.t1"; gene_id "Ledus.S1G202300"
Ledus.S1	AUGUSTUS	stop_codon	18049415	18049417	.	+	0	transcript_id "Ledus.S1G202300.t1"; gene_id "Ledus.S1G202300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2896.t1 is derived from g331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4445479	4446000	.	-	.	Ledus.S1G031700
Ledus.S1	AUGUSTUS	transcript	4445479	4446000	.	-	.	transcript_id "Ledus.S1G031700.t1"; gene_id "Ledus.S1G031700"
Ledus.S1	AUGUSTUS	stop_codon	4445476	4445478	.	-	0	transcript_id "Ledus.S1G031700.t1"; gene_id "Ledus.S1G031700"
Ledus.S1	AUGUSTUS	CDS	4445479	4446000	1	-	0	transcript_id "Ledus.S1G031700.t1"; gene_id "Ledus.S1G031700"
Ledus.S1	AUGUSTUS	exon	4445479	4446000	.	-	.	transcript_id "Ledus.S1G031700.t1"; gene_id "Ledus.S1G031700"
Ledus.S1	AUGUSTUS	start_codon	4445998	4446000	.	-	0	transcript_id "Ledus.S1G031700.t1"; gene_id "Ledus.S1G031700"
# This transcript jg12585.t2 is derived from g6207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12586.t1 is derived from g6208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13007684	13008840	.	-	.	Ledus.S4G174200
Ledus.S4	AUGUSTUS	transcript	13007684	13008840	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	stop_codon	13007681	13007683	.	-	0	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	CDS	13007684	13007793	1	-	2	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	exon	13007684	13007793	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	intron	13007794	13007886	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	CDS	13007887	13007941	1	-	0	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	exon	13007887	13007941	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	intron	13007942	13008023	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	CDS	13008024	13008106	1	-	2	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	exon	13008024	13008106	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	intron	13008107	13008190	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	CDS	13008191	13008284	1	-	0	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	exon	13008191	13008284	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	intron	13008285	13008419	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	CDS	13008420	13008493	1	-	2	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	exon	13008420	13008493	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	intron	13008494	13008602	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	CDS	13008603	13008639	0.99	-	0	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	exon	13008603	13008639	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	intron	13008640	13008768	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	CDS	13008769	13008840	0.99	-	0	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	exon	13008769	13008840	.	-	.	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
Ledus.S4	AUGUSTUS	start_codon	13008838	13008840	.	-	0	transcript_id "Ledus.S4G174200.t1"; gene_id "Ledus.S4G174200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3313.t1 is derived from g748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7436779	7437660	.	-	.	Ledus.S1G073400
Ledus.S1	AUGUSTUS	transcript	7436779	7437660	.	-	.	transcript_id "Ledus.S1G073400.t1"; gene_id "Ledus.S1G073400"
Ledus.S1	AUGUSTUS	stop_codon	7436776	7436778	.	-	0	transcript_id "Ledus.S1G073400.t1"; gene_id "Ledus.S1G073400"
Ledus.S1	AUGUSTUS	CDS	7436779	7436959	1	-	1	transcript_id "Ledus.S1G073400.t1"; gene_id "Ledus.S1G073400"
Ledus.S1	AUGUSTUS	exon	7436779	7436959	.	-	.	transcript_id "Ledus.S1G073400.t1"; gene_id "Ledus.S1G073400"
Ledus.S1	AUGUSTUS	intron	7436960	7437052	.	-	.	transcript_id "Ledus.S1G073400.t1"; gene_id "Ledus.S1G073400"
Ledus.S1	AUGUSTUS	CDS	7437053	7437357	0.8	-	0	transcript_id "Ledus.S1G073400.t1"; gene_id "Ledus.S1G073400"
Ledus.S1	AUGUSTUS	exon	7437053	7437357	.	-	.	transcript_id "Ledus.S1G073400.t1"; gene_id "Ledus.S1G073400"
Ledus.S1	AUGUSTUS	intron	7437358	7437474	.	-	.	transcript_id "Ledus.S1G073400.t1"; gene_id "Ledus.S1G073400"
Ledus.S1	AUGUSTUS	CDS	7437475	7437660	0.63	-	0	transcript_id "Ledus.S1G073400.t1"; gene_id "Ledus.S1G073400"
Ledus.S1	AUGUSTUS	exon	7437475	7437660	.	-	.	transcript_id "Ledus.S1G073400.t1"; gene_id "Ledus.S1G073400"
Ledus.S1	AUGUSTUS	start_codon	7437658	7437660	.	-	0	transcript_id "Ledus.S1G073400.t1"; gene_id "Ledus.S1G073400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9106.t1 is derived from g10136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4625058	4625444	.	-	.	Ledus.S3G058300
Ledus.S3	AUGUSTUS	transcript	4625058	4625444	.	-	.	transcript_id "Ledus.S3G058300.t1"; gene_id "Ledus.S3G058300"
Ledus.S3	AUGUSTUS	stop_codon	4625055	4625057	.	-	0	transcript_id "Ledus.S3G058300.t1"; gene_id "Ledus.S3G058300"
Ledus.S3	AUGUSTUS	CDS	4625058	4625444	0.57	-	0	transcript_id "Ledus.S3G058300.t1"; gene_id "Ledus.S3G058300"
Ledus.S3	AUGUSTUS	exon	4625058	4625444	.	-	.	transcript_id "Ledus.S3G058300.t1"; gene_id "Ledus.S3G058300"
Ledus.S3	AUGUSTUS	start_codon	4625442	4625444	.	-	0	transcript_id "Ledus.S3G058300.t1"; gene_id "Ledus.S3G058300"
# This transcript jg4126.t1 is derived from g1562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14841677	14841940	.	+	.	Ledus.S1G154700
Ledus.S1	AUGUSTUS	transcript	14841677	14841940	.	+	.	transcript_id "Ledus.S1G154700.t1"; gene_id "Ledus.S1G154700"
Ledus.S1	AUGUSTUS	start_codon	14841677	14841679	.	+	0	transcript_id "Ledus.S1G154700.t1"; gene_id "Ledus.S1G154700"
Ledus.S1	AUGUSTUS	CDS	14841677	14841940	0.82	+	0	transcript_id "Ledus.S1G154700.t1"; gene_id "Ledus.S1G154700"
Ledus.S1	AUGUSTUS	exon	14841677	14841940	.	+	.	transcript_id "Ledus.S1G154700.t1"; gene_id "Ledus.S1G154700"
Ledus.S1	AUGUSTUS	stop_codon	14841941	14841943	.	+	0	transcript_id "Ledus.S1G154700.t1"; gene_id "Ledus.S1G154700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6536.t1 is derived from g3979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32166462	32167241	.	-	.	Ledus.S1G395700
Ledus.S1	AUGUSTUS	transcript	32166462	32167241	.	-	.	transcript_id "Ledus.S1G395700.t1"; gene_id "Ledus.S1G395700"
Ledus.S1	AUGUSTUS	stop_codon	32166459	32166461	.	-	0	transcript_id "Ledus.S1G395700.t1"; gene_id "Ledus.S1G395700"
Ledus.S1	AUGUSTUS	CDS	32166462	32167241	0.85	-	0	transcript_id "Ledus.S1G395700.t1"; gene_id "Ledus.S1G395700"
Ledus.S1	AUGUSTUS	exon	32166462	32167241	.	-	.	transcript_id "Ledus.S1G395700.t1"; gene_id "Ledus.S1G395700"
Ledus.S1	AUGUSTUS	start_codon	32167239	32167241	.	-	0	transcript_id "Ledus.S1G395700.t1"; gene_id "Ledus.S1G395700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5682.t1 is derived from g3121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25784042	25785247	.	+	.	Ledus.S1G310300
Ledus.S1	AUGUSTUS	transcript	25784042	25785247	.	+	.	transcript_id "Ledus.S1G310300.t1"; gene_id "Ledus.S1G310300"
Ledus.S1	AUGUSTUS	start_codon	25784042	25784044	.	+	0	transcript_id "Ledus.S1G310300.t1"; gene_id "Ledus.S1G310300"
Ledus.S1	AUGUSTUS	CDS	25784042	25785247	0.78	+	0	transcript_id "Ledus.S1G310300.t1"; gene_id "Ledus.S1G310300"
Ledus.S1	AUGUSTUS	exon	25784042	25785247	.	+	.	transcript_id "Ledus.S1G310300.t1"; gene_id "Ledus.S1G310300"
Ledus.S1	AUGUSTUS	stop_codon	25785248	25785250	.	+	0	transcript_id "Ledus.S1G310300.t1"; gene_id "Ledus.S1G310300"
# This transcript jg6405.t2 is derived from g3848.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6406.t1 is derived from g3849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31107402	31108480	.	+	.	Ledus.S1G382700
Ledus.S1	AUGUSTUS	transcript	31107402	31108480	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	start_codon	31107402	31107404	.	+	0	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	CDS	31107402	31107454	1	+	0	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	exon	31107402	31107454	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	intron	31107455	31107544	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	CDS	31107545	31107587	1	+	1	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	exon	31107545	31107587	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	intron	31107588	31107684	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	CDS	31107685	31107767	0.95	+	0	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	exon	31107685	31107767	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	intron	31107768	31107835	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	CDS	31107836	31107907	0.85	+	1	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	exon	31107836	31107907	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	intron	31107908	31108034	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	CDS	31108035	31108087	0.95	+	1	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	exon	31108035	31108087	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	intron	31108088	31108176	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	CDS	31108177	31108240	0.94	+	2	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	exon	31108177	31108240	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	intron	31108241	31108350	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	CDS	31108351	31108480	0.93	+	1	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	exon	31108351	31108480	.	+	.	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
Ledus.S1	AUGUSTUS	stop_codon	31108481	31108483	.	+	0	transcript_id "Ledus.S1G382700.t1"; gene_id "Ledus.S1G382700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5587.t1 is derived from g3026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25279552	25281446	.	+	.	Ledus.S1G300800
Ledus.S1	AUGUSTUS	transcript	25279552	25281446	.	+	.	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	start_codon	25279552	25279554	.	+	0	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	CDS	25279552	25279773	0.59	+	0	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	exon	25279552	25279773	.	+	.	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	intron	25279774	25279890	.	+	.	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	CDS	25279891	25280026	0.7	+	0	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	exon	25279891	25280026	.	+	.	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	intron	25280027	25280646	.	+	.	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	CDS	25280647	25280749	1	+	2	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	exon	25280647	25280749	.	+	.	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	intron	25280750	25280886	.	+	.	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	CDS	25280887	25280923	1	+	1	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	exon	25280887	25280923	.	+	.	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	intron	25280924	25281011	.	+	.	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	CDS	25281012	25281246	1	+	0	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	exon	25281012	25281246	.	+	.	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	intron	25281247	25281333	.	+	.	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	CDS	25281334	25281446	1	+	2	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	exon	25281334	25281446	.	+	.	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
Ledus.S1	AUGUSTUS	stop_codon	25281447	25281449	.	+	0	transcript_id "Ledus.S1G300800.t1"; gene_id "Ledus.S1G300800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10586.t1 is derived from g11616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16260429	16261427	.	-	.	Ledus.S3G206300
Ledus.S3	AUGUSTUS	transcript	16260429	16261427	.	-	.	transcript_id "Ledus.S3G206300.t1"; gene_id "Ledus.S3G206300"
Ledus.S3	AUGUSTUS	stop_codon	16260426	16260428	.	-	0	transcript_id "Ledus.S3G206300.t1"; gene_id "Ledus.S3G206300"
Ledus.S3	AUGUSTUS	CDS	16260429	16261427	0.87	-	0	transcript_id "Ledus.S3G206300.t1"; gene_id "Ledus.S3G206300"
Ledus.S3	AUGUSTUS	exon	16260429	16261427	.	-	.	transcript_id "Ledus.S3G206300.t1"; gene_id "Ledus.S3G206300"
Ledus.S3	AUGUSTUS	start_codon	16261425	16261427	.	-	0	transcript_id "Ledus.S3G206300.t1"; gene_id "Ledus.S3G206300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11019.t1 is derived from g4637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1189968	1190988	.	-	.	Ledus.S4G017500
Ledus.S4	AUGUSTUS	transcript	1189968	1190988	.	-	.	transcript_id "Ledus.S4G017500.t1"; gene_id "Ledus.S4G017500"
Ledus.S4	AUGUSTUS	stop_codon	1189965	1189967	.	-	0	transcript_id "Ledus.S4G017500.t1"; gene_id "Ledus.S4G017500"
Ledus.S4	AUGUSTUS	CDS	1189968	1189978	1	-	2	transcript_id "Ledus.S4G017500.t1"; gene_id "Ledus.S4G017500"
Ledus.S4	AUGUSTUS	exon	1189968	1189978	.	-	.	transcript_id "Ledus.S4G017500.t1"; gene_id "Ledus.S4G017500"
Ledus.S4	AUGUSTUS	intron	1189979	1190227	.	-	.	transcript_id "Ledus.S4G017500.t1"; gene_id "Ledus.S4G017500"
Ledus.S4	AUGUSTUS	CDS	1190228	1190357	1	-	0	transcript_id "Ledus.S4G017500.t1"; gene_id "Ledus.S4G017500"
Ledus.S4	AUGUSTUS	exon	1190228	1190357	.	-	.	transcript_id "Ledus.S4G017500.t1"; gene_id "Ledus.S4G017500"
Ledus.S4	AUGUSTUS	intron	1190358	1190862	.	-	.	transcript_id "Ledus.S4G017500.t1"; gene_id "Ledus.S4G017500"
Ledus.S4	AUGUSTUS	CDS	1190863	1190988	0.96	-	0	transcript_id "Ledus.S4G017500.t1"; gene_id "Ledus.S4G017500"
Ledus.S4	AUGUSTUS	exon	1190863	1190988	.	-	.	transcript_id "Ledus.S4G017500.t1"; gene_id "Ledus.S4G017500"
Ledus.S4	AUGUSTUS	start_codon	1190986	1190988	.	-	0	transcript_id "Ledus.S4G017500.t1"; gene_id "Ledus.S4G017500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1834.t1 is derived from g8697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12885248	12887112	.	+	.	Ledus.S2G171600
Ledus.S2	AUGUSTUS	transcript	12885248	12887112	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	start_codon	12885248	12885250	.	+	0	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	CDS	12885248	12885508	0.28	+	0	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	exon	12885248	12885508	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	intron	12885509	12885674	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	CDS	12885675	12885927	1	+	0	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	exon	12885675	12885927	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	intron	12885928	12886227	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	CDS	12886228	12886319	1	+	2	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	exon	12886228	12886319	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	intron	12886320	12886439	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	CDS	12886440	12886566	1	+	0	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	exon	12886440	12886566	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	intron	12886567	12886648	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	CDS	12886649	12886734	1	+	2	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	exon	12886649	12886734	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	intron	12886735	12886821	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	CDS	12886822	12886887	0.97	+	0	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	exon	12886822	12886887	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	intron	12886888	12886989	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	CDS	12886990	12887112	0.97	+	0	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	exon	12886990	12887112	.	+	.	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
Ledus.S2	AUGUSTUS	stop_codon	12887113	12887115	.	+	0	transcript_id "Ledus.S2G171600.t1"; gene_id "Ledus.S2G171600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1840.t1 is derived from g8703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12912860	12914658	.	-	.	Ledus.S2G172200
Ledus.S2	AUGUSTUS	transcript	12912860	12914658	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	stop_codon	12912857	12912859	.	-	0	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	CDS	12912860	12912901	0.61	-	0	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	exon	12912860	12912901	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	intron	12912902	12913006	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	CDS	12913007	12913157	0.85	-	1	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	exon	12913007	12913157	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	intron	12913158	12913340	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	CDS	12913341	12913434	0.99	-	2	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	exon	12913341	12913434	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	intron	12913435	12913533	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	CDS	12913534	12913604	0.54	-	1	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	exon	12913534	12913604	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	intron	12913605	12913969	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	CDS	12913970	12914028	0.22	-	0	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	exon	12913970	12914028	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	intron	12914029	12914152	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	CDS	12914153	12914175	0.81	-	2	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	exon	12914153	12914175	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	intron	12914176	12914432	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	CDS	12914433	12914658	0.78	-	0	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	exon	12914433	12914658	.	-	.	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
Ledus.S2	AUGUSTUS	start_codon	12914656	12914658	.	-	0	transcript_id "Ledus.S2G172200.t1"; gene_id "Ledus.S2G172200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7425.t1 is derived from g12096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2378922	2380750	.	-	.	Ledus.S5G020300
Ledus.S5	AUGUSTUS	transcript	2378922	2380750	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	stop_codon	2378919	2378921	.	-	0	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	CDS	2378922	2379054	1	-	1	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	exon	2378922	2379054	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	intron	2379055	2379149	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	CDS	2379150	2379257	1	-	1	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	exon	2379150	2379257	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	intron	2379258	2379340	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	CDS	2379341	2379408	1	-	0	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	exon	2379341	2379408	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	intron	2379409	2379584	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	CDS	2379585	2379679	1	-	2	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	exon	2379585	2379679	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	intron	2379680	2379811	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	CDS	2379812	2379882	1	-	1	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	exon	2379812	2379882	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	intron	2379883	2380106	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	CDS	2380107	2380146	0.84	-	2	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	exon	2380107	2380146	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	intron	2380147	2380260	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	CDS	2380261	2380389	0.51	-	2	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	exon	2380261	2380389	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	intron	2380390	2380563	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	CDS	2380564	2380750	0.51	-	0	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	exon	2380564	2380750	.	-	.	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
Ledus.S5	AUGUSTUS	start_codon	2380748	2380750	.	-	0	transcript_id "Ledus.S5G020300.t1"; gene_id "Ledus.S5G020300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2413.t1 is derived from g9276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17983534	17985175	.	-	.	Ledus.S2G229500
Ledus.S2	AUGUSTUS	transcript	17983534	17985175	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	stop_codon	17983531	17983533	.	-	0	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	CDS	17983534	17983947	0.97	-	0	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	exon	17983534	17983947	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	intron	17983948	17984054	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	CDS	17984055	17984129	1	-	0	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	exon	17984055	17984129	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	intron	17984130	17984200	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	CDS	17984201	17984275	1	-	0	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	exon	17984201	17984275	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	intron	17984276	17984405	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	CDS	17984406	17984471	1	-	0	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	exon	17984406	17984471	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	intron	17984472	17984566	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	CDS	17984567	17984643	1	-	2	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	exon	17984567	17984643	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	intron	17984644	17984757	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	CDS	17984758	17984927	1	-	1	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	exon	17984758	17984927	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	intron	17984928	17985023	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	CDS	17985024	17985175	1	-	0	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	exon	17985024	17985175	.	-	.	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
Ledus.S2	AUGUSTUS	start_codon	17985173	17985175	.	-	0	transcript_id "Ledus.S2G229500.t1"; gene_id "Ledus.S2G229500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11679.t1 is derived from g5298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5938131	5940593	.	+	.	Ledus.S4G083500
Ledus.S4	AUGUSTUS	transcript	5938131	5940593	.	+	.	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	start_codon	5938131	5938133	.	+	0	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	CDS	5938131	5938403	1	+	0	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	exon	5938131	5938403	.	+	.	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	intron	5938404	5938556	.	+	.	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	CDS	5938557	5939261	0.99	+	0	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	exon	5938557	5939261	.	+	.	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	intron	5939262	5939355	.	+	.	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	CDS	5939356	5939579	1	+	0	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	exon	5939356	5939579	.	+	.	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	intron	5939580	5939660	.	+	.	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	CDS	5939661	5939807	1	+	1	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	exon	5939661	5939807	.	+	.	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	intron	5939808	5939983	.	+	.	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	CDS	5939984	5940205	1	+	1	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	exon	5939984	5940205	.	+	.	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	intron	5940206	5940358	.	+	.	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	CDS	5940359	5940593	1	+	1	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	exon	5940359	5940593	.	+	.	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
Ledus.S4	AUGUSTUS	stop_codon	5940594	5940596	.	+	0	transcript_id "Ledus.S4G083500.t1"; gene_id "Ledus.S4G083500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10412.t1 is derived from g11442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15028517	15029107	.	-	.	Ledus.S3G188900
Ledus.S3	AUGUSTUS	transcript	15028517	15029107	.	-	.	transcript_id "Ledus.S3G188900.t1"; gene_id "Ledus.S3G188900"
Ledus.S3	AUGUSTUS	stop_codon	15028514	15028516	.	-	0	transcript_id "Ledus.S3G188900.t1"; gene_id "Ledus.S3G188900"
Ledus.S3	AUGUSTUS	CDS	15028517	15029107	0.88	-	0	transcript_id "Ledus.S3G188900.t1"; gene_id "Ledus.S3G188900"
Ledus.S3	AUGUSTUS	exon	15028517	15029107	.	-	.	transcript_id "Ledus.S3G188900.t1"; gene_id "Ledus.S3G188900"
Ledus.S3	AUGUSTUS	start_codon	15029105	15029107	.	-	0	transcript_id "Ledus.S3G188900.t1"; gene_id "Ledus.S3G188900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8400.t1 is derived from g13072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11484987	11486452	.	+	.	Ledus.S5G117800
Ledus.S5	AUGUSTUS	transcript	11484987	11486452	.	+	.	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	start_codon	11484987	11484989	.	+	0	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	CDS	11484987	11485436	1	+	0	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	exon	11484987	11485436	.	+	.	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	intron	11485437	11485520	.	+	.	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	CDS	11485521	11485844	1	+	0	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	exon	11485521	11485844	.	+	.	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	intron	11485845	11485935	.	+	.	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	CDS	11485936	11486095	1	+	0	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	exon	11485936	11486095	.	+	.	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	intron	11486096	11486189	.	+	.	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	CDS	11486190	11486452	1	+	2	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	exon	11486190	11486452	.	+	.	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
Ledus.S5	AUGUSTUS	stop_codon	11486453	11486455	.	+	0	transcript_id "Ledus.S5G117800.t1"; gene_id "Ledus.S5G117800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11827.t1 is derived from g5446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7109388	7114296	.	+	.	Ledus.S4G098300
Ledus.S4	AUGUSTUS	transcript	7109388	7114296	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	start_codon	7109388	7109390	.	+	0	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7109388	7109588	0.91	+	0	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7109388	7109588	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7109589	7109915	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7109916	7110258	1	+	0	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7109916	7110258	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7110259	7110460	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7110461	7110657	1	+	2	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7110461	7110657	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7110658	7110730	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7110731	7110954	1	+	0	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7110731	7110954	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7110955	7111095	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7111096	7111944	0.88	+	1	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7111096	7111944	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7111945	7112467	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7112468	7112995	0.66	+	1	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7112468	7112995	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7112996	7113092	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7113093	7113245	1	+	1	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7113093	7113245	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7113246	7113326	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7113327	7113409	1	+	1	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7113327	7113409	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7113410	7113502	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7113503	7113602	1	+	2	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7113503	7113602	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7113603	7113745	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7113746	7113859	1	+	1	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7113746	7113859	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7113860	7113951	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7113952	7114094	1	+	1	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7113952	7114094	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7114095	7114219	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7114220	7114296	1	+	2	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7114220	7114296	.	+	.	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	stop_codon	7114297	7114299	.	+	0	transcript_id "Ledus.S4G098300.t1"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	transcript	7109388	7114296	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	start_codon	7109388	7109390	.	+	0	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7109388	7109588	0.82	+	0	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7109388	7109588	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7109589	7109915	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7109916	7110258	1	+	0	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7109916	7110258	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7110259	7110460	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7110461	7110657	1	+	2	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7110461	7110657	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7110658	7110730	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7110731	7110954	1	+	0	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7110731	7110954	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7110955	7111095	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7111096	7111944	0.84	+	1	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7111096	7111944	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7111945	7112467	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7112468	7112995	0.6	+	1	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7112468	7112995	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7112996	7113092	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7113093	7113245	1	+	1	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7113093	7113245	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7113246	7113320	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7113321	7113409	0.99	+	1	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7113321	7113409	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7113410	7113502	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7113503	7113602	1	+	2	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7113503	7113602	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7113603	7113745	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7113746	7113859	1	+	1	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7113746	7113859	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7113860	7113951	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7113952	7114094	1	+	1	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7113952	7114094	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	intron	7114095	7114219	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	CDS	7114220	7114296	1	+	2	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	exon	7114220	7114296	.	+	.	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
Ledus.S4	AUGUSTUS	stop_codon	7114297	7114299	.	+	0	transcript_id "Ledus.S4G098300.t2"; gene_id "Ledus.S4G098300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5590.t1 is derived from g3029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25299511	25300447	.	-	.	Ledus.S1G301100
Ledus.S1	AUGUSTUS	transcript	25299511	25300447	.	-	.	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	stop_codon	25299508	25299510	.	-	0	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	CDS	25299511	25299727	0.75	-	1	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	exon	25299511	25299727	.	-	.	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	intron	25299728	25299811	.	-	.	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	CDS	25299812	25299935	1	-	2	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	exon	25299812	25299935	.	-	.	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	intron	25299936	25300028	.	-	.	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	CDS	25300029	25300170	1	-	0	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	exon	25300029	25300170	.	-	.	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	intron	25300171	25300258	.	-	.	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	CDS	25300259	25300447	1	-	0	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	exon	25300259	25300447	.	-	.	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
Ledus.S1	AUGUSTUS	start_codon	25300445	25300447	.	-	0	transcript_id "Ledus.S1G301100.t1"; gene_id "Ledus.S1G301100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12197.t1 is derived from g5816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10257608	10259496	.	-	.	Ledus.S4G135300
Ledus.S4	AUGUSTUS	transcript	10257608	10259496	.	-	.	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	stop_codon	10257605	10257607	.	-	0	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	CDS	10257608	10258142	1	-	1	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	exon	10257608	10258142	.	-	.	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	intron	10258143	10258225	.	-	.	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	CDS	10258226	10258790	0.94	-	2	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	exon	10258226	10258790	.	-	.	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	intron	10258791	10258910	.	-	.	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	CDS	10258911	10259297	0.94	-	2	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	exon	10258911	10259297	.	-	.	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	intron	10259298	10259375	.	-	.	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	CDS	10259376	10259496	1	-	0	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	exon	10259376	10259496	.	-	.	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
Ledus.S4	AUGUSTUS	start_codon	10259494	10259496	.	-	0	transcript_id "Ledus.S4G135300.t1"; gene_id "Ledus.S4G135300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2007.t1 is derived from g8870.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14143734	14143940	.	-	.	Ledus.S2G188900
Ledus.S2	AUGUSTUS	transcript	14143734	14143940	.	-	.	transcript_id "Ledus.S2G188900.t1"; gene_id "Ledus.S2G188900"
Ledus.S2	AUGUSTUS	stop_codon	14143731	14143733	.	-	0	transcript_id "Ledus.S2G188900.t1"; gene_id "Ledus.S2G188900"
Ledus.S2	AUGUSTUS	CDS	14143734	14143940	0.47	-	0	transcript_id "Ledus.S2G188900.t1"; gene_id "Ledus.S2G188900"
Ledus.S2	AUGUSTUS	exon	14143734	14143940	.	-	.	transcript_id "Ledus.S2G188900.t1"; gene_id "Ledus.S2G188900"
Ledus.S2	AUGUSTUS	start_codon	14143938	14143940	.	-	0	transcript_id "Ledus.S2G188900.t1"; gene_id "Ledus.S2G188900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1763.t1 is derived from g8625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12402354	12402765	.	-	.	Ledus.S2G164500
Ledus.S2	AUGUSTUS	transcript	12402354	12402765	.	-	.	transcript_id "Ledus.S2G164500.t1"; gene_id "Ledus.S2G164500"
Ledus.S2	AUGUSTUS	stop_codon	12402351	12402353	.	-	0	transcript_id "Ledus.S2G164500.t1"; gene_id "Ledus.S2G164500"
Ledus.S2	AUGUSTUS	CDS	12402354	12402564	0.8	-	1	transcript_id "Ledus.S2G164500.t1"; gene_id "Ledus.S2G164500"
Ledus.S2	AUGUSTUS	exon	12402354	12402564	.	-	.	transcript_id "Ledus.S2G164500.t1"; gene_id "Ledus.S2G164500"
Ledus.S2	AUGUSTUS	intron	12402565	12402655	.	-	.	transcript_id "Ledus.S2G164500.t1"; gene_id "Ledus.S2G164500"
Ledus.S2	AUGUSTUS	CDS	12402656	12402765	0.78	-	0	transcript_id "Ledus.S2G164500.t1"; gene_id "Ledus.S2G164500"
Ledus.S2	AUGUSTUS	exon	12402656	12402765	.	-	.	transcript_id "Ledus.S2G164500.t1"; gene_id "Ledus.S2G164500"
Ledus.S2	AUGUSTUS	start_codon	12402763	12402765	.	-	0	transcript_id "Ledus.S2G164500.t1"; gene_id "Ledus.S2G164500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10065.t1 is derived from g11095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12454532	12454927	.	-	.	Ledus.S3G154200
Ledus.S3	AUGUSTUS	transcript	12454532	12454927	.	-	.	transcript_id "Ledus.S3G154200.t1"; gene_id "Ledus.S3G154200"
Ledus.S3	AUGUSTUS	stop_codon	12454529	12454531	.	-	0	transcript_id "Ledus.S3G154200.t1"; gene_id "Ledus.S3G154200"
Ledus.S3	AUGUSTUS	CDS	12454532	12454927	0.56	-	0	transcript_id "Ledus.S3G154200.t1"; gene_id "Ledus.S3G154200"
Ledus.S3	AUGUSTUS	exon	12454532	12454927	.	-	.	transcript_id "Ledus.S3G154200.t1"; gene_id "Ledus.S3G154200"
Ledus.S3	AUGUSTUS	start_codon	12454925	12454927	.	-	0	transcript_id "Ledus.S3G154200.t1"; gene_id "Ledus.S3G154200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12701.t1 is derived from g6323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13967064	13970165	.	-	.	Ledus.S4G185700
Ledus.S4	AUGUSTUS	transcript	13967064	13970165	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	stop_codon	13967061	13967063	.	-	0	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13967064	13967190	1	-	1	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13967064	13967190	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13967191	13967341	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13967342	13967451	1	-	0	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13967342	13967451	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13967452	13967532	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13967533	13967595	1	-	0	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13967533	13967595	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13967596	13967674	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13967675	13967792	1	-	1	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13967675	13967792	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13967793	13967987	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13967988	13968043	1	-	0	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13967988	13968043	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13968044	13968131	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13968132	13968275	1	-	0	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13968132	13968275	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13968276	13968355	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13968356	13968403	1	-	0	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13968356	13968403	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13968404	13968497	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13968498	13968563	0.53	-	0	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13968498	13968563	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13968564	13968728	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13968729	13968782	0.5	-	0	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13968729	13968782	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13968783	13968934	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13968935	13969036	1	-	0	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13968935	13969036	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13969037	13969169	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13969170	13969241	1	-	0	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13969170	13969241	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13969242	13969323	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13969324	13969451	1	-	2	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13969324	13969451	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13969452	13969587	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13969588	13969694	1	-	1	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13969588	13969694	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	intron	13969695	13969866	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	CDS	13969867	13970165	1	-	0	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	exon	13969867	13970165	.	-	.	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
Ledus.S4	AUGUSTUS	start_codon	13970163	13970165	.	-	0	transcript_id "Ledus.S4G185700.t1"; gene_id "Ledus.S4G185700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2190.t1 is derived from g9053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15871582	15872838	.	+	.	Ledus.S2G207200
Ledus.S2	AUGUSTUS	transcript	15871582	15872838	.	+	.	transcript_id "Ledus.S2G207200.t1"; gene_id "Ledus.S2G207200"
Ledus.S2	AUGUSTUS	start_codon	15871582	15871584	.	+	0	transcript_id "Ledus.S2G207200.t1"; gene_id "Ledus.S2G207200"
Ledus.S2	AUGUSTUS	CDS	15871582	15872041	0.87	+	0	transcript_id "Ledus.S2G207200.t1"; gene_id "Ledus.S2G207200"
Ledus.S2	AUGUSTUS	exon	15871582	15872041	.	+	.	transcript_id "Ledus.S2G207200.t1"; gene_id "Ledus.S2G207200"
Ledus.S2	AUGUSTUS	intron	15872042	15872137	.	+	.	transcript_id "Ledus.S2G207200.t1"; gene_id "Ledus.S2G207200"
Ledus.S2	AUGUSTUS	CDS	15872138	15872838	1	+	2	transcript_id "Ledus.S2G207200.t1"; gene_id "Ledus.S2G207200"
Ledus.S2	AUGUSTUS	exon	15872138	15872838	.	+	.	transcript_id "Ledus.S2G207200.t1"; gene_id "Ledus.S2G207200"
Ledus.S2	AUGUSTUS	stop_codon	15872839	15872841	.	+	0	transcript_id "Ledus.S2G207200.t1"; gene_id "Ledus.S2G207200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg899.t1 is derived from g7760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6024181	6024735	.	-	.	Ledus.S2G078100
Ledus.S2	AUGUSTUS	transcript	6024181	6024735	.	-	.	transcript_id "Ledus.S2G078100.t1"; gene_id "Ledus.S2G078100"
Ledus.S2	AUGUSTUS	stop_codon	6024178	6024180	.	-	0	transcript_id "Ledus.S2G078100.t1"; gene_id "Ledus.S2G078100"
Ledus.S2	AUGUSTUS	CDS	6024181	6024735	0.74	-	0	transcript_id "Ledus.S2G078100.t1"; gene_id "Ledus.S2G078100"
Ledus.S2	AUGUSTUS	exon	6024181	6024735	.	-	.	transcript_id "Ledus.S2G078100.t1"; gene_id "Ledus.S2G078100"
Ledus.S2	AUGUSTUS	start_codon	6024733	6024735	.	-	0	transcript_id "Ledus.S2G078100.t1"; gene_id "Ledus.S2G078100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1620.t1 is derived from g8481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11456975	11460165	.	-	.	Ledus.S2G150200
Ledus.S2	AUGUSTUS	transcript	11456975	11460165	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	stop_codon	11456972	11456974	.	-	0	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	CDS	11456975	11456987	1	-	1	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	exon	11456975	11456987	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	intron	11456988	11457119	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	CDS	11457120	11457223	1	-	0	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	exon	11457120	11457223	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	intron	11457224	11457318	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	CDS	11457319	11457369	1	-	0	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	exon	11457319	11457369	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	intron	11457370	11457470	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	CDS	11457471	11457537	1	-	1	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	exon	11457471	11457537	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	intron	11457538	11457637	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	CDS	11457638	11457900	1	-	0	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	exon	11457638	11457900	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	intron	11457901	11457998	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	CDS	11457999	11458954	0.93	-	2	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	exon	11457999	11458954	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	intron	11458955	11459081	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	CDS	11459082	11459964	0.48	-	0	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	exon	11459082	11459964	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	intron	11459965	11460096	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	CDS	11460097	11460165	0.38	-	0	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	exon	11460097	11460165	.	-	.	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
Ledus.S2	AUGUSTUS	start_codon	11460163	11460165	.	-	0	transcript_id "Ledus.S2G150200.t1"; gene_id "Ledus.S2G150200"
# This transcript jg12067.t2 is derived from g5686.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12067.t3 is derived from g5686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12068.t1 is derived from g5687.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9300831	9301482	.	+	.	Ledus.S4G122400
Ledus.S4	AUGUSTUS	transcript	9300831	9301482	.	+	.	transcript_id "Ledus.S4G122400.t1"; gene_id "Ledus.S4G122400"
Ledus.S4	AUGUSTUS	start_codon	9300831	9300833	.	+	0	transcript_id "Ledus.S4G122400.t1"; gene_id "Ledus.S4G122400"
Ledus.S4	AUGUSTUS	CDS	9300831	9300884	0.63	+	0	transcript_id "Ledus.S4G122400.t1"; gene_id "Ledus.S4G122400"
Ledus.S4	AUGUSTUS	exon	9300831	9300884	.	+	.	transcript_id "Ledus.S4G122400.t1"; gene_id "Ledus.S4G122400"
Ledus.S4	AUGUSTUS	intron	9300885	9301124	.	+	.	transcript_id "Ledus.S4G122400.t1"; gene_id "Ledus.S4G122400"
Ledus.S4	AUGUSTUS	CDS	9301125	9301222	0.77	+	0	transcript_id "Ledus.S4G122400.t1"; gene_id "Ledus.S4G122400"
Ledus.S4	AUGUSTUS	exon	9301125	9301222	.	+	.	transcript_id "Ledus.S4G122400.t1"; gene_id "Ledus.S4G122400"
Ledus.S4	AUGUSTUS	intron	9301223	9301361	.	+	.	transcript_id "Ledus.S4G122400.t1"; gene_id "Ledus.S4G122400"
Ledus.S4	AUGUSTUS	CDS	9301362	9301482	0.84	+	1	transcript_id "Ledus.S4G122400.t1"; gene_id "Ledus.S4G122400"
Ledus.S4	AUGUSTUS	exon	9301362	9301482	.	+	.	transcript_id "Ledus.S4G122400.t1"; gene_id "Ledus.S4G122400"
Ledus.S4	AUGUSTUS	stop_codon	9301483	9301485	.	+	0	transcript_id "Ledus.S4G122400.t1"; gene_id "Ledus.S4G122400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8711.t1 is derived from g9741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1548017	1550935	.	+	.	Ledus.S3G018800
Ledus.S3	AUGUSTUS	transcript	1548017	1550935	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	start_codon	1548017	1548019	.	+	0	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1548017	1548161	1	+	0	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1548017	1548161	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	intron	1548162	1548315	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1548316	1548350	1	+	2	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1548316	1548350	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	intron	1548351	1548468	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1548469	1548606	0.97	+	0	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1548469	1548606	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	intron	1548607	1548808	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1548809	1548963	0.97	+	0	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1548809	1548963	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	intron	1548964	1549052	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1549053	1549060	0.97	+	1	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1549053	1549060	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	intron	1549061	1549210	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1549211	1549395	1	+	2	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1549211	1549395	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	intron	1549396	1549542	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1549543	1549596	1	+	0	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1549543	1549596	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	intron	1549597	1549751	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1549752	1549840	1	+	0	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1549752	1549840	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	intron	1549841	1549981	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1549982	1550098	1	+	1	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1549982	1550098	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	intron	1550099	1550225	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1550226	1550362	1	+	1	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1550226	1550362	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	intron	1550363	1550442	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1550443	1550521	1	+	2	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1550443	1550521	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	intron	1550522	1550606	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1550607	1550663	0.97	+	1	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1550607	1550663	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	intron	1550664	1550742	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	CDS	1550743	1550935	0.93	+	1	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	exon	1550743	1550935	.	+	.	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
Ledus.S3	AUGUSTUS	stop_codon	1550936	1550938	.	+	0	transcript_id "Ledus.S3G018800.t1"; gene_id "Ledus.S3G018800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13127.t1 is derived from g6937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6602683	6603246	.	-	.	Ledus.S6G018900
Ledus.S6	AUGUSTUS	transcript	6602683	6603246	.	-	.	transcript_id "Ledus.S6G018900.t1"; gene_id "Ledus.S6G018900"
Ledus.S6	AUGUSTUS	stop_codon	6602680	6602682	.	-	0	transcript_id "Ledus.S6G018900.t1"; gene_id "Ledus.S6G018900"
Ledus.S6	AUGUSTUS	CDS	6602683	6602826	0.66	-	0	transcript_id "Ledus.S6G018900.t1"; gene_id "Ledus.S6G018900"
Ledus.S6	AUGUSTUS	exon	6602683	6602826	.	-	.	transcript_id "Ledus.S6G018900.t1"; gene_id "Ledus.S6G018900"
Ledus.S6	AUGUSTUS	intron	6602827	6603138	.	-	.	transcript_id "Ledus.S6G018900.t1"; gene_id "Ledus.S6G018900"
Ledus.S6	AUGUSTUS	CDS	6603139	6603246	0.77	-	0	transcript_id "Ledus.S6G018900.t1"; gene_id "Ledus.S6G018900"
Ledus.S6	AUGUSTUS	exon	6603139	6603246	.	-	.	transcript_id "Ledus.S6G018900.t1"; gene_id "Ledus.S6G018900"
Ledus.S6	AUGUSTUS	start_codon	6603244	6603246	.	-	0	transcript_id "Ledus.S6G018900.t1"; gene_id "Ledus.S6G018900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10975.t1 is derived from g4593.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	966376	969598	.	+	.	Ledus.S4G013100
Ledus.S4	AUGUSTUS	transcript	966376	969598	.	+	.	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	start_codon	966376	966378	.	+	0	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	CDS	966376	966526	0.95	+	0	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	exon	966376	966526	.	+	.	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	intron	966527	966604	.	+	.	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	CDS	966605	968445	1	+	2	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	exon	966605	968445	.	+	.	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	intron	968446	968536	.	+	.	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	CDS	968537	968762	1	+	0	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	exon	968537	968762	.	+	.	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	intron	968763	968840	.	+	.	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	CDS	968841	969598	1	+	2	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	exon	968841	969598	.	+	.	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
Ledus.S4	AUGUSTUS	stop_codon	969599	969601	.	+	0	transcript_id "Ledus.S4G013100.t1"; gene_id "Ledus.S4G013100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9635.t1 is derived from g10665.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8484152	8484786	.	+	.	Ledus.S3G111200
Ledus.S3	AUGUSTUS	transcript	8484152	8484786	.	+	.	transcript_id "Ledus.S3G111200.t1"; gene_id "Ledus.S3G111200"
Ledus.S3	AUGUSTUS	start_codon	8484152	8484154	.	+	0	transcript_id "Ledus.S3G111200.t1"; gene_id "Ledus.S3G111200"
Ledus.S3	AUGUSTUS	CDS	8484152	8484361	0.93	+	0	transcript_id "Ledus.S3G111200.t1"; gene_id "Ledus.S3G111200"
Ledus.S3	AUGUSTUS	exon	8484152	8484361	.	+	.	transcript_id "Ledus.S3G111200.t1"; gene_id "Ledus.S3G111200"
Ledus.S3	AUGUSTUS	intron	8484362	8484450	.	+	.	transcript_id "Ledus.S3G111200.t1"; gene_id "Ledus.S3G111200"
Ledus.S3	AUGUSTUS	CDS	8484451	8484580	1	+	0	transcript_id "Ledus.S3G111200.t1"; gene_id "Ledus.S3G111200"
Ledus.S3	AUGUSTUS	exon	8484451	8484580	.	+	.	transcript_id "Ledus.S3G111200.t1"; gene_id "Ledus.S3G111200"
Ledus.S3	AUGUSTUS	intron	8484581	8484676	.	+	.	transcript_id "Ledus.S3G111200.t1"; gene_id "Ledus.S3G111200"
Ledus.S3	AUGUSTUS	CDS	8484677	8484786	1	+	2	transcript_id "Ledus.S3G111200.t1"; gene_id "Ledus.S3G111200"
Ledus.S3	AUGUSTUS	exon	8484677	8484786	.	+	.	transcript_id "Ledus.S3G111200.t1"; gene_id "Ledus.S3G111200"
Ledus.S3	AUGUSTUS	stop_codon	8484787	8484789	.	+	0	transcript_id "Ledus.S3G111200.t1"; gene_id "Ledus.S3G111200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12840.t1 is derived from g11874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	74421	74618	.	+	.	Ledus.C11G000400
Ledus.C11	AUGUSTUS	transcript	74421	74618	.	+	.	transcript_id "Ledus.C11G000400.t1"; gene_id "Ledus.C11G000400"
Ledus.C11	AUGUSTUS	start_codon	74421	74423	.	+	0	transcript_id "Ledus.C11G000400.t1"; gene_id "Ledus.C11G000400"
Ledus.C11	AUGUSTUS	CDS	74421	74618	0.69	+	0	transcript_id "Ledus.C11G000400.t1"; gene_id "Ledus.C11G000400"
Ledus.C11	AUGUSTUS	exon	74421	74618	.	+	.	transcript_id "Ledus.C11G000400.t1"; gene_id "Ledus.C11G000400"
Ledus.C11	AUGUSTUS	stop_codon	74619	74621	.	+	0	transcript_id "Ledus.C11G000400.t1"; gene_id "Ledus.C11G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1415.t1 is derived from g8276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9951060	9951909	.	-	.	Ledus.S2G129700
Ledus.S2	AUGUSTUS	transcript	9951060	9951909	.	-	.	transcript_id "Ledus.S2G129700.t1"; gene_id "Ledus.S2G129700"
Ledus.S2	AUGUSTUS	stop_codon	9951057	9951059	.	-	0	transcript_id "Ledus.S2G129700.t1"; gene_id "Ledus.S2G129700"
Ledus.S2	AUGUSTUS	CDS	9951060	9951341	0.83	-	0	transcript_id "Ledus.S2G129700.t1"; gene_id "Ledus.S2G129700"
Ledus.S2	AUGUSTUS	exon	9951060	9951341	.	-	.	transcript_id "Ledus.S2G129700.t1"; gene_id "Ledus.S2G129700"
Ledus.S2	AUGUSTUS	intron	9951342	9951439	.	-	.	transcript_id "Ledus.S2G129700.t1"; gene_id "Ledus.S2G129700"
Ledus.S2	AUGUSTUS	CDS	9951440	9951565	0.28	-	0	transcript_id "Ledus.S2G129700.t1"; gene_id "Ledus.S2G129700"
Ledus.S2	AUGUSTUS	exon	9951440	9951565	.	-	.	transcript_id "Ledus.S2G129700.t1"; gene_id "Ledus.S2G129700"
Ledus.S2	AUGUSTUS	intron	9951566	9951789	.	-	.	transcript_id "Ledus.S2G129700.t1"; gene_id "Ledus.S2G129700"
Ledus.S2	AUGUSTUS	CDS	9951790	9951909	0.51	-	0	transcript_id "Ledus.S2G129700.t1"; gene_id "Ledus.S2G129700"
Ledus.S2	AUGUSTUS	exon	9951790	9951909	.	-	.	transcript_id "Ledus.S2G129700.t1"; gene_id "Ledus.S2G129700"
Ledus.S2	AUGUSTUS	start_codon	9951907	9951909	.	-	0	transcript_id "Ledus.S2G129700.t1"; gene_id "Ledus.S2G129700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg437.t1 is derived from g7298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2522009	2522287	.	+	.	Ledus.S2G031900
Ledus.S2	AUGUSTUS	transcript	2522009	2522287	.	+	.	transcript_id "Ledus.S2G031900.t1"; gene_id "Ledus.S2G031900"
Ledus.S2	AUGUSTUS	start_codon	2522009	2522011	.	+	0	transcript_id "Ledus.S2G031900.t1"; gene_id "Ledus.S2G031900"
Ledus.S2	AUGUSTUS	CDS	2522009	2522287	0.97	+	0	transcript_id "Ledus.S2G031900.t1"; gene_id "Ledus.S2G031900"
Ledus.S2	AUGUSTUS	exon	2522009	2522287	.	+	.	transcript_id "Ledus.S2G031900.t1"; gene_id "Ledus.S2G031900"
Ledus.S2	AUGUSTUS	stop_codon	2522288	2522290	.	+	0	transcript_id "Ledus.S2G031900.t1"; gene_id "Ledus.S2G031900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3306.t1 is derived from g741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7406867	7408993	.	-	.	Ledus.S1G072700
Ledus.S1	AUGUSTUS	transcript	7406867	7408993	.	-	.	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	stop_codon	7406864	7406866	.	-	0	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	CDS	7406867	7407060	0.99	-	2	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	exon	7406867	7407060	.	-	.	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	intron	7407061	7407232	.	-	.	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	CDS	7407233	7408463	0.9	-	0	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	exon	7407233	7408463	.	-	.	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	intron	7408464	7408534	.	-	.	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	CDS	7408535	7408752	0.99	-	2	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	exon	7408535	7408752	.	-	.	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	intron	7408753	7408842	.	-	.	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	CDS	7408843	7408993	0.69	-	0	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	exon	7408843	7408993	.	-	.	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
Ledus.S1	AUGUSTUS	start_codon	7408991	7408993	.	-	0	transcript_id "Ledus.S1G072700.t1"; gene_id "Ledus.S1G072700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8355.t1 is derived from g13027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11009711	11010964	.	-	.	Ledus.S5G113300
Ledus.S5	AUGUSTUS	transcript	11009711	11010964	.	-	.	transcript_id "Ledus.S5G113300.t1"; gene_id "Ledus.S5G113300"
Ledus.S5	AUGUSTUS	stop_codon	11009708	11009710	.	-	0	transcript_id "Ledus.S5G113300.t1"; gene_id "Ledus.S5G113300"
Ledus.S5	AUGUSTUS	CDS	11009711	11010964	0.9	-	0	transcript_id "Ledus.S5G113300.t1"; gene_id "Ledus.S5G113300"
Ledus.S5	AUGUSTUS	exon	11009711	11010964	.	-	.	transcript_id "Ledus.S5G113300.t1"; gene_id "Ledus.S5G113300"
Ledus.S5	AUGUSTUS	start_codon	11010962	11010964	.	-	0	transcript_id "Ledus.S5G113300.t1"; gene_id "Ledus.S5G113300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8592.t1 is derived from g9622.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	489828	491443	.	-	.	Ledus.S3G006900
Ledus.S3	AUGUSTUS	transcript	489828	491202	.	-	.	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	stop_codon	489825	489827	.	-	0	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	CDS	489828	490163	0.43	-	0	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	exon	489828	490163	.	-	.	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	intron	490164	490363	.	-	.	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	CDS	490364	490554	0.64	-	2	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	exon	490364	490554	.	-	.	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	intron	490555	490665	.	-	.	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	CDS	490666	490926	1	-	2	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	exon	490666	490926	.	-	.	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	intron	490927	491003	.	-	.	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	CDS	491004	491202	1	-	0	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	exon	491004	491202	.	-	.	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	start_codon	491200	491202	.	-	0	transcript_id "Ledus.S3G006900.t1"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	transcript	489828	491443	.	-	.	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	stop_codon	489825	489827	.	-	0	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	CDS	489828	490163	0.5	-	0	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	exon	489828	490163	.	-	.	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	intron	490164	490363	.	-	.	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	CDS	490364	490554	0.69	-	2	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	exon	490364	490554	.	-	.	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	intron	490555	490665	.	-	.	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	CDS	490666	490926	0.99	-	2	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	exon	490666	490926	.	-	.	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	intron	490927	491103	.	-	.	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	CDS	491104	491443	0.7	-	0	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	exon	491104	491443	.	-	.	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
Ledus.S3	AUGUSTUS	start_codon	491441	491443	.	-	0	transcript_id "Ledus.S3G006900.t2"; gene_id "Ledus.S3G006900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11050.t1 is derived from g4668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1415240	1415440	.	+	.	Ledus.S4G020600
Ledus.S4	AUGUSTUS	transcript	1415240	1415440	.	+	.	transcript_id "Ledus.S4G020600.t1"; gene_id "Ledus.S4G020600"
Ledus.S4	AUGUSTUS	start_codon	1415240	1415242	.	+	0	transcript_id "Ledus.S4G020600.t1"; gene_id "Ledus.S4G020600"
Ledus.S4	AUGUSTUS	CDS	1415240	1415440	0.68	+	0	transcript_id "Ledus.S4G020600.t1"; gene_id "Ledus.S4G020600"
Ledus.S4	AUGUSTUS	exon	1415240	1415440	.	+	.	transcript_id "Ledus.S4G020600.t1"; gene_id "Ledus.S4G020600"
Ledus.S4	AUGUSTUS	stop_codon	1415441	1415443	.	+	0	transcript_id "Ledus.S4G020600.t1"; gene_id "Ledus.S4G020600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6354.t1 is derived from g3797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30706369	30707500	.	+	.	Ledus.S1G377500
Ledus.S1	AUGUSTUS	transcript	30706369	30707500	.	+	.	transcript_id "Ledus.S1G377500.t1"; gene_id "Ledus.S1G377500"
Ledus.S1	AUGUSTUS	start_codon	30706369	30706371	.	+	0	transcript_id "Ledus.S1G377500.t1"; gene_id "Ledus.S1G377500"
Ledus.S1	AUGUSTUS	CDS	30706369	30706394	0.83	+	0	transcript_id "Ledus.S1G377500.t1"; gene_id "Ledus.S1G377500"
Ledus.S1	AUGUSTUS	exon	30706369	30706394	.	+	.	transcript_id "Ledus.S1G377500.t1"; gene_id "Ledus.S1G377500"
Ledus.S1	AUGUSTUS	intron	30706395	30706527	.	+	.	transcript_id "Ledus.S1G377500.t1"; gene_id "Ledus.S1G377500"
Ledus.S1	AUGUSTUS	CDS	30706528	30707500	1	+	1	transcript_id "Ledus.S1G377500.t1"; gene_id "Ledus.S1G377500"
Ledus.S1	AUGUSTUS	exon	30706528	30707500	.	+	.	transcript_id "Ledus.S1G377500.t1"; gene_id "Ledus.S1G377500"
Ledus.S1	AUGUSTUS	stop_codon	30707501	30707503	.	+	0	transcript_id "Ledus.S1G377500.t1"; gene_id "Ledus.S1G377500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7901.t1 is derived from g12572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7732003	7734156	.	-	.	Ledus.S5G067900
Ledus.S5	AUGUSTUS	transcript	7732003	7734156	.	-	.	transcript_id "Ledus.S5G067900.t1"; gene_id "Ledus.S5G067900"
Ledus.S5	AUGUSTUS	stop_codon	7732000	7732002	.	-	0	transcript_id "Ledus.S5G067900.t1"; gene_id "Ledus.S5G067900"
Ledus.S5	AUGUSTUS	CDS	7732003	7734156	1	-	0	transcript_id "Ledus.S5G067900.t1"; gene_id "Ledus.S5G067900"
Ledus.S5	AUGUSTUS	exon	7732003	7734156	.	-	.	transcript_id "Ledus.S5G067900.t1"; gene_id "Ledus.S5G067900"
Ledus.S5	AUGUSTUS	start_codon	7734154	7734156	.	-	0	transcript_id "Ledus.S5G067900.t1"; gene_id "Ledus.S5G067900"
Ledus.S5	AUGUSTUS	transcript	7732003	7732893	.	-	.	transcript_id "Ledus.S5G067900.t2"; gene_id "Ledus.S5G067900"
Ledus.S5	AUGUSTUS	stop_codon	7732000	7732002	.	-	0	transcript_id "Ledus.S5G067900.t2"; gene_id "Ledus.S5G067900"
Ledus.S5	AUGUSTUS	CDS	7732003	7732893	0.97	-	0	transcript_id "Ledus.S5G067900.t2"; gene_id "Ledus.S5G067900"
Ledus.S5	AUGUSTUS	exon	7732003	7732893	.	-	.	transcript_id "Ledus.S5G067900.t2"; gene_id "Ledus.S5G067900"
Ledus.S5	AUGUSTUS	start_codon	7732891	7732893	.	-	0	transcript_id "Ledus.S5G067900.t2"; gene_id "Ledus.S5G067900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11638.t1 is derived from g5257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5704703	5705257	.	+	.	Ledus.S4G079400
Ledus.S4	AUGUSTUS	transcript	5704703	5705257	.	+	.	transcript_id "Ledus.S4G079400.t1"; gene_id "Ledus.S4G079400"
Ledus.S4	AUGUSTUS	start_codon	5704703	5704705	.	+	0	transcript_id "Ledus.S4G079400.t1"; gene_id "Ledus.S4G079400"
Ledus.S4	AUGUSTUS	CDS	5704703	5705257	0.77	+	0	transcript_id "Ledus.S4G079400.t1"; gene_id "Ledus.S4G079400"
Ledus.S4	AUGUSTUS	exon	5704703	5705257	.	+	.	transcript_id "Ledus.S4G079400.t1"; gene_id "Ledus.S4G079400"
Ledus.S4	AUGUSTUS	stop_codon	5705258	5705260	.	+	0	transcript_id "Ledus.S4G079400.t1"; gene_id "Ledus.S4G079400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4086.t1 is derived from g1522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14530431	14531627	.	-	.	Ledus.S1G150700
Ledus.S1	AUGUSTUS	transcript	14530431	14531627	.	-	.	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	stop_codon	14530428	14530430	.	-	0	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	CDS	14530431	14530582	0.96	-	2	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	exon	14530431	14530582	.	-	.	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	intron	14530583	14530682	.	-	.	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	CDS	14530683	14530889	0.99	-	2	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	exon	14530683	14530889	.	-	.	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	intron	14530890	14530967	.	-	.	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	CDS	14530968	14531121	1	-	0	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	exon	14530968	14531121	.	-	.	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	intron	14531122	14531354	.	-	.	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	CDS	14531355	14531434	1	-	2	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	exon	14531355	14531434	.	-	.	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	intron	14531435	14531551	.	-	.	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	CDS	14531552	14531627	0.72	-	0	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	exon	14531552	14531627	.	-	.	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
Ledus.S1	AUGUSTUS	start_codon	14531625	14531627	.	-	0	transcript_id "Ledus.S1G150700.t1"; gene_id "Ledus.S1G150700"
# This transcript jg3138.t2 is derived from g573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3139.t1 is derived from g574.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6231051	6232196	.	-	.	Ledus.S1G056000
Ledus.S1	AUGUSTUS	transcript	6231051	6232196	.	-	.	transcript_id "Ledus.S1G056000.t1"; gene_id "Ledus.S1G056000"
Ledus.S1	AUGUSTUS	stop_codon	6231048	6231050	.	-	0	transcript_id "Ledus.S1G056000.t1"; gene_id "Ledus.S1G056000"
Ledus.S1	AUGUSTUS	CDS	6231051	6231558	0.95	-	1	transcript_id "Ledus.S1G056000.t1"; gene_id "Ledus.S1G056000"
Ledus.S1	AUGUSTUS	exon	6231051	6231558	.	-	.	transcript_id "Ledus.S1G056000.t1"; gene_id "Ledus.S1G056000"
Ledus.S1	AUGUSTUS	intron	6231559	6231658	.	-	.	transcript_id "Ledus.S1G056000.t1"; gene_id "Ledus.S1G056000"
Ledus.S1	AUGUSTUS	CDS	6231659	6231714	1	-	0	transcript_id "Ledus.S1G056000.t1"; gene_id "Ledus.S1G056000"
Ledus.S1	AUGUSTUS	exon	6231659	6231714	.	-	.	transcript_id "Ledus.S1G056000.t1"; gene_id "Ledus.S1G056000"
Ledus.S1	AUGUSTUS	intron	6231715	6232040	.	-	.	transcript_id "Ledus.S1G056000.t1"; gene_id "Ledus.S1G056000"
Ledus.S1	AUGUSTUS	CDS	6232041	6232196	0.48	-	0	transcript_id "Ledus.S1G056000.t1"; gene_id "Ledus.S1G056000"
Ledus.S1	AUGUSTUS	exon	6232041	6232196	.	-	.	transcript_id "Ledus.S1G056000.t1"; gene_id "Ledus.S1G056000"
Ledus.S1	AUGUSTUS	start_codon	6232194	6232196	.	-	0	transcript_id "Ledus.S1G056000.t1"; gene_id "Ledus.S1G056000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg130.t1 is derived from g6991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	132665	135321	.	+	.	Ledus.S2G001200
Ledus.S2	AUGUSTUS	transcript	132665	135321	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	start_codon	132665	132667	.	+	0	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	CDS	132665	132707	0.51	+	0	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	exon	132665	132707	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	intron	132708	132862	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	CDS	132863	133081	1	+	2	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	exon	132863	133081	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	intron	133082	133193	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	CDS	133194	133609	0.8	+	2	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	exon	133194	133609	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	intron	133610	133706	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	CDS	133707	133917	0.9	+	0	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	exon	133707	133917	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	intron	133918	134045	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	CDS	134046	134212	0.65	+	2	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	exon	134046	134212	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	intron	134213	134350	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	CDS	134351	134578	1	+	0	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	exon	134351	134578	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	intron	134579	134650	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	CDS	134651	134905	1	+	0	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	exon	134651	134905	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	intron	134906	134986	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	CDS	134987	135155	0.99	+	0	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	exon	134987	135155	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	intron	135156	135250	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	CDS	135251	135321	0.97	+	2	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	exon	135251	135321	.	+	.	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
Ledus.S2	AUGUSTUS	stop_codon	135322	135324	.	+	0	transcript_id "Ledus.S2G001200.t1"; gene_id "Ledus.S2G001200"
# This transcript jg12679.t2 is derived from g6301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12680.t1 is derived from g6302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13842993	13847100	.	+	.	Ledus.S4G183600
Ledus.S4	AUGUSTUS	transcript	13842993	13847100	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	start_codon	13842993	13842995	.	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13842993	13843192	0.98	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13842993	13843192	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13843193	13843339	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13843340	13843601	0.96	+	1	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13843340	13843601	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13843602	13843701	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13843702	13843823	1	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13843702	13843823	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13843824	13843902	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13843903	13844050	1	+	1	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13843903	13844050	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13844051	13844148	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13844149	13844286	1	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13844149	13844286	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13844287	13844402	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13844403	13844498	1	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13844403	13844498	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13844499	13844580	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13844581	13844640	1	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13844581	13844640	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13844641	13844774	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13844775	13844867	1	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13844775	13844867	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13844868	13845007	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13845008	13845116	1	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13845008	13845116	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13845117	13845250	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13845251	13845355	1	+	2	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13845251	13845355	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13845356	13845447	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13845448	13845584	1	+	2	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13845448	13845584	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13845585	13845666	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13845667	13845907	0.88	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13845667	13845907	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13845908	13845998	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13845999	13846195	0.76	+	2	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13845999	13846195	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13846196	13846280	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13846281	13846403	1	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13846281	13846403	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13846404	13846504	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13846505	13846759	0.97	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13846505	13846759	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13846760	13846856	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13846857	13846953	0.47	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13846857	13846953	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	intron	13846954	13847056	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	CDS	13847057	13847100	0.45	+	2	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	exon	13847057	13847100	.	+	.	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
Ledus.S4	AUGUSTUS	stop_codon	13847101	13847103	.	+	0	transcript_id "Ledus.S4G183600.t1"; gene_id "Ledus.S4G183600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12544.t1 is derived from g6166.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12816085	12820347	.	-	.	Ledus.S4G170000
Ledus.S4	AUGUSTUS	transcript	12816085	12820347	.	-	.	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	stop_codon	12816082	12816084	.	-	0	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	CDS	12816085	12819034	0.94	-	1	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	exon	12816085	12819034	.	-	.	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	intron	12819035	12819188	.	-	.	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	CDS	12819189	12819382	1	-	0	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	exon	12819189	12819382	.	-	.	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	intron	12819383	12819474	.	-	.	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	CDS	12819475	12819557	1	-	2	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	exon	12819475	12819557	.	-	.	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	intron	12819558	12819652	.	-	.	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	CDS	12819653	12819859	0.36	-	2	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	exon	12819653	12819859	.	-	.	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	intron	12819860	12819937	.	-	.	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	CDS	12819938	12819979	0.37	-	2	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	exon	12819938	12819979	.	-	.	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	intron	12819980	12820259	.	-	.	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	CDS	12820260	12820347	0.35	-	0	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	exon	12820260	12820347	.	-	.	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	start_codon	12820345	12820347	.	-	0	transcript_id "Ledus.S4G170000.t1"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	transcript	12819033	12820347	.	-	.	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	stop_codon	12819030	12819032	.	-	0	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	CDS	12819033	12819034	0.81	-	2	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	exon	12819033	12819034	.	-	.	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	intron	12819035	12819204	.	-	.	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	CDS	12819205	12819382	0.86	-	0	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	exon	12819205	12819382	.	-	.	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	intron	12819383	12819474	.	-	.	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	CDS	12819475	12819557	1	-	2	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	exon	12819475	12819557	.	-	.	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	intron	12819558	12819652	.	-	.	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	CDS	12819653	12819859	0.33	-	2	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	exon	12819653	12819859	.	-	.	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	intron	12819860	12819937	.	-	.	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	CDS	12819938	12819979	0.33	-	2	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	exon	12819938	12819979	.	-	.	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	intron	12819980	12820259	.	-	.	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	CDS	12820260	12820347	0.33	-	0	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	exon	12820260	12820347	.	-	.	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
Ledus.S4	AUGUSTUS	start_codon	12820345	12820347	.	-	0	transcript_id "Ledus.S4G170000.t2"; gene_id "Ledus.S4G170000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9754.t1 is derived from g10784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9592493	9594025	.	+	.	Ledus.S3G123100
Ledus.S3	AUGUSTUS	transcript	9592493	9594025	.	+	.	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	start_codon	9592493	9592495	.	+	0	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9592493	9592528	0.91	+	0	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9592493	9592528	.	+	.	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	intron	9592529	9592979	.	+	.	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9592980	9593267	0.92	+	0	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9592980	9593267	.	+	.	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	intron	9593268	9593351	.	+	.	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9593352	9593430	1	+	0	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9593352	9593430	.	+	.	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	intron	9593431	9593572	.	+	.	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9593573	9593646	1	+	2	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9593573	9593646	.	+	.	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	intron	9593647	9593728	.	+	.	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9593729	9593789	1	+	0	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9593729	9593789	.	+	.	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	intron	9593790	9593885	.	+	.	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9593886	9594025	1	+	2	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9593886	9594025	.	+	.	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	stop_codon	9594026	9594028	.	+	0	transcript_id "Ledus.S3G123100.t1"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	transcript	9592613	9594025	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	start_codon	9592613	9592615	.	+	0	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9592613	9592777	0.85	+	0	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9592613	9592777	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	intron	9592778	9592881	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9592882	9592893	0.9	+	0	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9592882	9592893	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	intron	9592894	9592979	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9592980	9593267	1	+	0	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9592980	9593267	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	intron	9593268	9593351	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9593352	9593430	1	+	0	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9593352	9593430	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	intron	9593431	9593572	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9593573	9593646	1	+	2	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9593573	9593646	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	intron	9593647	9593728	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9593729	9593789	1	+	0	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9593729	9593789	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	intron	9593790	9593885	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	CDS	9593886	9594025	1	+	2	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	exon	9593886	9594025	.	+	.	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
Ledus.S3	AUGUSTUS	stop_codon	9594026	9594028	.	+	0	transcript_id "Ledus.S3G123100.t2"; gene_id "Ledus.S3G123100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9833.t1 is derived from g10863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10354474	10360777	.	-	.	Ledus.S3G131000
Ledus.S3	AUGUSTUS	transcript	10354474	10360777	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	stop_codon	10354471	10354473	.	-	0	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10354474	10354614	0.57	-	0	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10354474	10354614	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10354615	10354757	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10354758	10354982	0.96	-	0	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10354758	10354982	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10354983	10355361	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10355362	10355505	0.94	-	0	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10355362	10355505	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10355506	10355625	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10355626	10355703	0.52	-	0	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10355626	10355703	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10355704	10355802	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10355803	10356074	0.93	-	2	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10355803	10356074	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10356075	10356261	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10356262	10356411	0.99	-	2	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10356262	10356411	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10356412	10356629	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10356630	10356708	1	-	0	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10356630	10356708	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10356709	10356961	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10356962	10357156	1	-	0	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10356962	10357156	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10357157	10357451	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10357452	10357754	0.83	-	0	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10357452	10357754	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10357755	10358027	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10358028	10358201	0.65	-	0	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10358028	10358201	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10358202	10358276	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10358277	10358545	0.62	-	2	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10358277	10358545	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10358546	10358886	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10358887	10359109	0.95	-	0	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10358887	10359109	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10359110	10359418	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10359419	10359719	0.86	-	1	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10359419	10359719	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10359720	10359931	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10359932	10360052	0.78	-	2	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10359932	10360052	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10360053	10360179	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10360180	10360777	0.9	-	0	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10360180	10360777	.	-	.	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	start_codon	10360775	10360777	.	-	0	transcript_id "Ledus.S3G131000.t1"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	transcript	10354474	10360777	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	stop_codon	10354471	10354473	.	-	0	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10354474	10354614	0.55	-	0	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10354474	10354614	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10354615	10354757	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10354758	10354982	0.99	-	0	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10354758	10354982	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10354983	10355361	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10355362	10355505	0.92	-	0	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10355362	10355505	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10355506	10355625	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10355626	10355703	0.6	-	0	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10355626	10355703	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10355704	10355802	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10355803	10356074	0.92	-	2	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10355803	10356074	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10356075	10356261	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10356262	10356411	0.98	-	2	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10356262	10356411	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10356412	10356629	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10356630	10356708	1	-	0	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10356630	10356708	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10356709	10356961	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10356962	10357156	1	-	0	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10356962	10357156	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10357157	10357451	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10357452	10357754	0.75	-	0	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10357452	10357754	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10357755	10358027	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10358028	10358201	0.53	-	0	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10358028	10358201	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10358202	10358276	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10358277	10358545	0.5	-	2	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10358277	10358545	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10358546	10358886	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10358887	10359109	0.98	-	0	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10358887	10359109	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10359110	10359418	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10359419	10359551	0.72	-	1	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10359419	10359551	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10359552	10359652	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10359653	10359838	0.77	-	1	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10359653	10359838	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10359839	10359931	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10359932	10360052	0.78	-	2	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10359932	10360052	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10360053	10360179	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10360180	10360777	0.91	-	0	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10360180	10360777	.	-	.	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	start_codon	10360775	10360777	.	-	0	transcript_id "Ledus.S3G131000.t2"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	transcript	10354474	10360777	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	stop_codon	10354471	10354473	.	-	0	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10354474	10354614	0.56	-	0	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10354474	10354614	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10354615	10354757	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10354758	10354982	0.97	-	0	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10354758	10354982	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10354983	10355361	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10355362	10355505	0.89	-	0	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10355362	10355505	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10355506	10355625	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10355626	10355703	0.59	-	0	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10355626	10355703	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10355704	10355802	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10355803	10356074	0.85	-	2	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10355803	10356074	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10356075	10356165	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10356166	10356182	0.23	-	1	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10356166	10356182	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10356183	10356320	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10356321	10356411	0.22	-	2	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10356321	10356411	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10356412	10356629	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10356630	10356708	1	-	0	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10356630	10356708	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10356709	10356961	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10356962	10357156	1	-	0	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10356962	10357156	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10357157	10357451	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10357452	10357754	0.84	-	0	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10357452	10357754	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10357755	10358027	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10358028	10358201	0.55	-	0	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10358028	10358201	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10358202	10358276	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10358277	10358545	0.46	-	2	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10358277	10358545	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10358546	10358886	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10358887	10359109	0.95	-	0	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10358887	10359109	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10359110	10359418	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10359419	10359719	0.83	-	1	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10359419	10359719	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10359720	10359931	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10359932	10360052	0.68	-	2	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10359932	10360052	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	intron	10360053	10360179	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	CDS	10360180	10360777	0.87	-	0	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	exon	10360180	10360777	.	-	.	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
Ledus.S3	AUGUSTUS	start_codon	10360775	10360777	.	-	0	transcript_id "Ledus.S3G131000.t3"; gene_id "Ledus.S3G131000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11354.t1 is derived from g4972.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3732198	3737273	.	-	.	Ledus.S4G051000
Ledus.S4	AUGUSTUS	transcript	3736500	3737273	.	-	.	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	stop_codon	3736497	3736499	.	-	0	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3736500	3736512	0.99	-	1	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3736500	3736512	.	-	.	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3736513	3736607	.	-	.	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3736608	3736750	1	-	0	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3736608	3736750	.	-	.	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3736751	3736830	.	-	.	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3736831	3736968	1	-	0	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3736831	3736968	.	-	.	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3736969	3737053	.	-	.	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3737054	3737123	1	-	1	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3737054	3737123	.	-	.	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3737124	3737202	.	-	.	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3737203	3737273	0.86	-	0	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3737203	3737273	.	-	.	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	start_codon	3737271	3737273	.	-	0	transcript_id "Ledus.S4G051000.t1"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	transcript	3732198	3737273	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	stop_codon	3732195	3732197	.	-	0	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3732198	3732790	0.91	-	2	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3732198	3732790	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3732791	3732897	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3732898	3732932	0.97	-	1	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3732898	3732932	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3732933	3733063	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3733064	3733090	0.98	-	1	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3733064	3733090	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3733091	3733244	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3733245	3733370	0.9	-	1	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3733245	3733370	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3733371	3733552	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3733553	3733673	0.72	-	2	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3733553	3733673	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3733674	3733783	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3733784	3733819	0.74	-	2	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3733784	3733819	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3733820	3734273	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3734274	3734330	1	-	2	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3734274	3734330	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3734331	3734540	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3734541	3735319	0.47	-	1	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3734541	3735319	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3735320	3735496	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3735497	3735820	0.47	-	1	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3735497	3735820	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3735821	3735905	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3735906	3735976	1	-	0	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3735906	3735976	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3735977	3736081	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3736082	3736183	1	-	0	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3736082	3736183	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3736184	3736280	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3736281	3736337	0.99	-	0	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3736281	3736337	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3736338	3736447	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3736448	3736532	1	-	1	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3736448	3736532	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3736533	3736607	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3736608	3736750	1	-	0	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3736608	3736750	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3736751	3736830	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3736831	3736968	1	-	0	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3736831	3736968	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3736969	3737053	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3737054	3737123	1	-	1	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3737054	3737123	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	intron	3737124	3737202	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	CDS	3737203	3737273	0.8	-	0	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	exon	3737203	3737273	.	-	.	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
Ledus.S4	AUGUSTUS	start_codon	3737271	3737273	.	-	0	transcript_id "Ledus.S4G051000.t2"; gene_id "Ledus.S4G051000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11739.t1 is derived from g5358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6515186	6520081	.	-	.	Ledus.S4G089500
Ledus.S4	AUGUSTUS	transcript	6516027	6520081	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	stop_codon	6516024	6516026	.	-	0	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6516027	6516129	0.58	-	1	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6516027	6516129	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6516130	6516329	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6516330	6516535	0.97	-	0	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6516330	6516535	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6516536	6516757	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6516758	6516783	1	-	2	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6516758	6516783	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6516784	6516878	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6516879	6517018	1	-	1	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6516879	6517018	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6517019	6517108	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6517109	6517197	1	-	0	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6517109	6517197	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6517198	6517307	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6517308	6517745	0.94	-	0	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6517308	6517745	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6517746	6517844	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6517845	6518001	1	-	1	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6517845	6518001	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6518002	6518092	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6518093	6518355	1	-	0	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6518093	6518355	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6518356	6518441	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6518442	6518609	1	-	0	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6518442	6518609	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6518610	6518752	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6518753	6518890	1	-	0	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6518753	6518890	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6518891	6518970	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6518971	6519145	1	-	1	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6518971	6519145	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6519146	6519224	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6519225	6519370	1	-	0	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6519225	6519370	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6519371	6519445	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6519446	6519651	0.57	-	2	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6519446	6519651	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6519652	6519731	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6519732	6519793	0.62	-	1	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6519732	6519793	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6519794	6519909	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6519910	6519977	0.62	-	0	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6519910	6519977	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6519978	6520060	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6520061	6520081	0.61	-	0	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6520061	6520081	.	-	.	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	start_codon	6520079	6520081	.	-	0	transcript_id "Ledus.S4G089500.t1"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	transcript	6515186	6518878	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	stop_codon	6515183	6515185	.	-	0	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6515186	6515254	0.83	-	0	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6515186	6515254	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6515255	6515449	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6515450	6515561	0.54	-	1	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6515450	6515561	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6515562	6515787	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6515788	6515836	0.41	-	2	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6515788	6515836	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6515837	6516031	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6516032	6516129	0.56	-	1	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6516032	6516129	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6516130	6516329	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6516330	6516535	0.97	-	0	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6516330	6516535	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6516536	6516757	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6516758	6516783	0.99	-	2	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6516758	6516783	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6516784	6516878	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6516879	6517018	1	-	1	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6516879	6517018	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6517019	6517108	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6517109	6517197	1	-	0	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6517109	6517197	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6517198	6517307	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6517308	6517745	0.91	-	0	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6517308	6517745	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6517746	6517844	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6517845	6518001	1	-	1	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6517845	6518001	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6518002	6518092	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6518093	6518355	1	-	0	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6518093	6518355	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6518356	6518441	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6518442	6518609	0.99	-	0	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6518442	6518609	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	intron	6518610	6518752	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	CDS	6518753	6518878	0.86	-	0	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	exon	6518753	6518878	.	-	.	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
Ledus.S4	AUGUSTUS	start_codon	6518876	6518878	.	-	0	transcript_id "Ledus.S4G089500.t2"; gene_id "Ledus.S4G089500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg332.t1 is derived from g7193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1735243	1735446	.	-	.	Ledus.S2G021400
Ledus.S2	AUGUSTUS	transcript	1735243	1735446	.	-	.	transcript_id "Ledus.S2G021400.t1"; gene_id "Ledus.S2G021400"
Ledus.S2	AUGUSTUS	stop_codon	1735240	1735242	.	-	0	transcript_id "Ledus.S2G021400.t1"; gene_id "Ledus.S2G021400"
Ledus.S2	AUGUSTUS	CDS	1735243	1735446	0.6	-	0	transcript_id "Ledus.S2G021400.t1"; gene_id "Ledus.S2G021400"
Ledus.S2	AUGUSTUS	exon	1735243	1735446	.	-	.	transcript_id "Ledus.S2G021400.t1"; gene_id "Ledus.S2G021400"
Ledus.S2	AUGUSTUS	start_codon	1735444	1735446	.	-	0	transcript_id "Ledus.S2G021400.t1"; gene_id "Ledus.S2G021400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13103.t1 is derived from g6913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5673866	5674126	.	-	.	Ledus.S6G016500
Ledus.S6	AUGUSTUS	transcript	5673866	5674126	.	-	.	transcript_id "Ledus.S6G016500.t1"; gene_id "Ledus.S6G016500"
Ledus.S6	AUGUSTUS	stop_codon	5673863	5673865	.	-	0	transcript_id "Ledus.S6G016500.t1"; gene_id "Ledus.S6G016500"
Ledus.S6	AUGUSTUS	CDS	5673866	5674126	0.88	-	0	transcript_id "Ledus.S6G016500.t1"; gene_id "Ledus.S6G016500"
Ledus.S6	AUGUSTUS	exon	5673866	5674126	.	-	.	transcript_id "Ledus.S6G016500.t1"; gene_id "Ledus.S6G016500"
Ledus.S6	AUGUSTUS	start_codon	5674124	5674126	.	-	0	transcript_id "Ledus.S6G016500.t1"; gene_id "Ledus.S6G016500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9985.t1 is derived from g11015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11746534	11748614	.	-	.	Ledus.S3G146200
Ledus.S3	AUGUSTUS	transcript	11746534	11748614	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	stop_codon	11746531	11746533	.	-	0	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11746534	11746546	0.98	-	1	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11746534	11746546	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11746547	11746628	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11746629	11746726	0.91	-	0	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11746629	11746726	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11746727	11746797	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11746798	11746905	0.88	-	0	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11746798	11746905	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11746906	11747001	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11747002	11747199	0.99	-	0	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11747002	11747199	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11747200	11747300	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11747301	11747543	0.98	-	0	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11747301	11747543	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11747544	11747791	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11747792	11747965	1	-	0	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11747792	11747965	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11747966	11748077	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11748078	11748614	0.46	-	0	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11748078	11748614	.	-	.	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	start_codon	11748612	11748614	.	-	0	transcript_id "Ledus.S3G146200.t1"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	transcript	11746534	11748614	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	stop_codon	11746531	11746533	.	-	0	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11746534	11746546	0.96	-	1	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11746534	11746546	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11746547	11746628	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11746629	11746726	0.93	-	0	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11746629	11746726	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11746727	11746797	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11746798	11746905	0.85	-	0	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11746798	11746905	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11746906	11747001	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11747002	11747199	0.99	-	0	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11747002	11747199	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11747200	11747300	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11747301	11747543	0.99	-	0	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11747301	11747543	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11747544	11747626	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11747627	11747965	1	-	0	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11747627	11747965	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11747966	11748077	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11748078	11748614	0.4	-	0	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11748078	11748614	.	-	.	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	start_codon	11748612	11748614	.	-	0	transcript_id "Ledus.S3G146200.t2"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	transcript	11746534	11748614	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	stop_codon	11746531	11746533	.	-	0	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11746534	11746546	0.95	-	1	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11746534	11746546	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11746547	11746628	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11746629	11746726	0.89	-	0	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11746629	11746726	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11746727	11746797	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11746798	11746905	0.82	-	0	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11746798	11746905	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11746906	11747061	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11747062	11747199	0.94	-	0	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11747062	11747199	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11747200	11747300	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11747301	11747543	0.99	-	0	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11747301	11747543	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11747544	11747791	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11747792	11747965	0.98	-	0	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11747792	11747965	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	intron	11747966	11748077	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	CDS	11748078	11748614	0.48	-	0	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	exon	11748078	11748614	.	-	.	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
Ledus.S3	AUGUSTUS	start_codon	11748612	11748614	.	-	0	transcript_id "Ledus.S3G146200.t3"; gene_id "Ledus.S3G146200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4223.t1 is derived from g1659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15635874	15638424	.	-	.	Ledus.S1G164400
Ledus.S1	AUGUSTUS	transcript	15635874	15638424	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	stop_codon	15635871	15635873	.	-	0	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	CDS	15635874	15636169	1	-	2	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	exon	15635874	15636169	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	intron	15636170	15636264	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	CDS	15636265	15636434	1	-	1	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	exon	15636265	15636434	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	intron	15636435	15636500	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	CDS	15636501	15636705	0.97	-	2	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	exon	15636501	15636705	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	intron	15636706	15636808	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	CDS	15636809	15637024	1	-	2	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	exon	15636809	15637024	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	intron	15637025	15637144	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	CDS	15637145	15637371	1	-	1	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	exon	15637145	15637371	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	intron	15637372	15637455	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	CDS	15637456	15637675	1	-	2	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	exon	15637456	15637675	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	intron	15637676	15638090	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	CDS	15638091	15638160	0.76	-	0	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	exon	15638091	15638160	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	intron	15638161	15638340	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	CDS	15638341	15638424	0.83	-	0	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	exon	15638341	15638424	.	-	.	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
Ledus.S1	AUGUSTUS	start_codon	15638422	15638424	.	-	0	transcript_id "Ledus.S1G164400.t1"; gene_id "Ledus.S1G164400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1568.t1 is derived from g8429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10974732	10975685	.	+	.	Ledus.S2G145000
Ledus.S2	AUGUSTUS	transcript	10974732	10975685	.	+	.	transcript_id "Ledus.S2G145000.t1"; gene_id "Ledus.S2G145000"
Ledus.S2	AUGUSTUS	start_codon	10974732	10974734	.	+	0	transcript_id "Ledus.S2G145000.t1"; gene_id "Ledus.S2G145000"
Ledus.S2	AUGUSTUS	CDS	10974732	10975685	0.99	+	0	transcript_id "Ledus.S2G145000.t1"; gene_id "Ledus.S2G145000"
Ledus.S2	AUGUSTUS	exon	10974732	10975685	.	+	.	transcript_id "Ledus.S2G145000.t1"; gene_id "Ledus.S2G145000"
Ledus.S2	AUGUSTUS	stop_codon	10975686	10975688	.	+	0	transcript_id "Ledus.S2G145000.t1"; gene_id "Ledus.S2G145000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7734.t1 is derived from g12405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5653082	5653444	.	+	.	Ledus.S5G051200
Ledus.S5	AUGUSTUS	transcript	5653082	5653444	.	+	.	transcript_id "Ledus.S5G051200.t1"; gene_id "Ledus.S5G051200"
Ledus.S5	AUGUSTUS	start_codon	5653082	5653084	.	+	0	transcript_id "Ledus.S5G051200.t1"; gene_id "Ledus.S5G051200"
Ledus.S5	AUGUSTUS	CDS	5653082	5653444	0.88	+	0	transcript_id "Ledus.S5G051200.t1"; gene_id "Ledus.S5G051200"
Ledus.S5	AUGUSTUS	exon	5653082	5653444	.	+	.	transcript_id "Ledus.S5G051200.t1"; gene_id "Ledus.S5G051200"
Ledus.S5	AUGUSTUS	stop_codon	5653445	5653447	.	+	0	transcript_id "Ledus.S5G051200.t1"; gene_id "Ledus.S5G051200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7943.t1 is derived from g12614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7998976	8001412	.	+	.	Ledus.S5G072100
Ledus.S5	AUGUSTUS	transcript	7998976	8001412	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	start_codon	7998976	7998978	.	+	0	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	CDS	7998976	7999108	0.31	+	0	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	exon	7998976	7999108	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	intron	7999109	7999331	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	CDS	7999332	7999402	1	+	2	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	exon	7999332	7999402	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	intron	7999403	7999512	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	CDS	7999513	7999674	1	+	0	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	exon	7999513	7999674	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	intron	7999675	7999756	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	CDS	7999757	7999862	1	+	0	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	exon	7999757	7999862	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	intron	7999863	8000003	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	CDS	8000004	8000197	1	+	2	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	exon	8000004	8000197	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	intron	8000198	8000318	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	CDS	8000319	8000422	0.99	+	0	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	exon	8000319	8000422	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	intron	8000423	8000510	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	CDS	8000511	8000694	0.99	+	1	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	exon	8000511	8000694	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	intron	8000695	8000819	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	CDS	8000820	8000999	1	+	0	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	exon	8000820	8000999	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	intron	8001000	8001105	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	CDS	8001106	8001276	1	+	0	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	exon	8001106	8001276	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	intron	8001277	8001364	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	CDS	8001365	8001412	0.93	+	0	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	exon	8001365	8001412	.	+	.	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
Ledus.S5	AUGUSTUS	stop_codon	8001413	8001415	.	+	0	transcript_id "Ledus.S5G072100.t1"; gene_id "Ledus.S5G072100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9468.t1 is derived from g10498.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7173864	7177869	.	+	.	Ledus.S3G094500
Ledus.S3	AUGUSTUS	transcript	7173864	7177869	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	start_codon	7173864	7173866	.	+	0	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	CDS	7173864	7173922	0.9	+	0	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	exon	7173864	7173922	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	intron	7173923	7174038	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	CDS	7174039	7174337	0.96	+	1	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	exon	7174039	7174337	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	intron	7174338	7174502	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	CDS	7174503	7174682	1	+	2	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	exon	7174503	7174682	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	intron	7174683	7174770	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	CDS	7174771	7174932	0.61	+	2	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	exon	7174771	7174932	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	intron	7174933	7175042	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	CDS	7175043	7175197	1	+	2	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	exon	7175043	7175197	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	intron	7175198	7175298	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	CDS	7175299	7175391	1	+	0	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	exon	7175299	7175391	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	intron	7175392	7175490	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	CDS	7175491	7175576	1	+	0	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	exon	7175491	7175576	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	intron	7175577	7175713	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	CDS	7175714	7175940	1	+	1	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	exon	7175714	7175940	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	intron	7175941	7177435	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	CDS	7177436	7177681	0.87	+	2	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	exon	7177436	7177681	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	intron	7177682	7177765	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	CDS	7177766	7177869	0.73	+	2	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	exon	7177766	7177869	.	+	.	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
Ledus.S3	AUGUSTUS	stop_codon	7177870	7177872	.	+	0	transcript_id "Ledus.S3G094500.t1"; gene_id "Ledus.S3G094500"
# This transcript jg9763.t2 is derived from g10793.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9764.t1 is derived from g10794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9654906	9656433	.	+	.	Ledus.S3G124100
Ledus.S3	AUGUSTUS	transcript	9654906	9656433	.	+	.	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	start_codon	9654906	9654908	.	+	0	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	CDS	9654906	9655041	0.53	+	0	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	exon	9654906	9655041	.	+	.	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	intron	9655042	9655174	.	+	.	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	CDS	9655175	9655281	1	+	2	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	exon	9655175	9655281	.	+	.	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	intron	9655282	9655381	.	+	.	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	CDS	9655382	9655456	1	+	0	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	exon	9655382	9655456	.	+	.	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	intron	9655457	9655538	.	+	.	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	CDS	9655539	9655598	1	+	0	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	exon	9655539	9655598	.	+	.	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	intron	9655599	9655770	.	+	.	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	CDS	9655771	9655826	1	+	0	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	exon	9655771	9655826	.	+	.	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	intron	9655827	9655913	.	+	.	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	CDS	9655914	9656433	0.81	+	1	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	exon	9655914	9656433	.	+	.	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
Ledus.S3	AUGUSTUS	stop_codon	9656434	9656436	.	+	0	transcript_id "Ledus.S3G124100.t1"; gene_id "Ledus.S3G124100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4027.t1 is derived from g1463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14249155	14252983	.	-	.	Ledus.S1G144800
Ledus.S1	AUGUSTUS	transcript	14249155	14252983	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	stop_codon	14249152	14249154	.	-	0	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14249155	14249514	0.98	-	0	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14249155	14249514	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14249515	14249596	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14249597	14249685	1	-	2	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14249597	14249685	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14249686	14249762	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14249763	14249980	1	-	1	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14249763	14249980	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14249981	14250120	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14250121	14250255	0.97	-	1	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14250121	14250255	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14250256	14250365	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14250366	14250433	1	-	0	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14250366	14250433	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14250434	14250517	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14250518	14250659	1	-	1	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14250518	14250659	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14250660	14250789	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14250790	14251200	0.99	-	1	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14250790	14251200	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14251201	14251303	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14251304	14251423	0.98	-	1	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14251304	14251423	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14251424	14251505	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14251506	14251608	0.98	-	2	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14251506	14251608	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14251609	14251687	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14251688	14251769	0.98	-	0	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14251688	14251769	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14251770	14251932	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14251933	14251981	1	-	1	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14251933	14251981	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14251982	14252085	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14252086	14252176	1	-	2	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14252086	14252176	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14252177	14252252	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14252253	14252509	0.86	-	1	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14252253	14252509	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	intron	14252510	14252615	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	CDS	14252616	14252983	0.59	-	0	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	exon	14252616	14252983	.	-	.	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
Ledus.S1	AUGUSTUS	start_codon	14252981	14252983	.	-	0	transcript_id "Ledus.S1G144800.t1"; gene_id "Ledus.S1G144800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4211.t1 is derived from g1647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15571464	15578233	.	+	.	Ledus.S1G163200
Ledus.S1	AUGUSTUS	transcript	15571464	15578233	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	start_codon	15571464	15571466	.	+	0	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15571464	15571554	0.31	+	0	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15571464	15571554	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15571555	15571641	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15571642	15571750	1	+	2	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15571642	15571750	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15571751	15571836	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15571837	15571901	0.98	+	1	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15571837	15571901	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15571902	15571985	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15571986	15572079	0.96	+	2	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15571986	15572079	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15572080	15572205	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15572206	15572279	0.83	+	1	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15572206	15572279	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15572280	15572379	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15572380	15572468	0.92	+	2	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15572380	15572468	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15572469	15572610	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15572611	15572679	0.9	+	0	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15572611	15572679	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15572680	15572804	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15572805	15572984	0.9	+	0	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15572805	15572984	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15572985	15573117	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15573118	15573364	0.97	+	0	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15573118	15573364	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15573365	15573578	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15573579	15573682	0.89	+	2	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15573579	15573682	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15573683	15573810	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15573811	15574910	0.96	+	0	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15573811	15574910	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15574911	15575058	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15575059	15575469	0.99	+	1	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15575059	15575469	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15575470	15575753	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15575754	15575910	0.97	+	1	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15575754	15575910	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15575911	15576136	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15576137	15576229	0.83	+	0	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15576137	15576229	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15576230	15576433	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15576434	15576507	1	+	0	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15576434	15576507	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15576508	15576631	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15576632	15576689	0.94	+	1	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15576632	15576689	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15576690	15576793	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15576794	15576886	0.7	+	0	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15576794	15576886	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	intron	15576887	15577030	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	CDS	15577031	15578233	0.43	+	0	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	exon	15577031	15578233	.	+	.	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
Ledus.S1	AUGUSTUS	stop_codon	15578234	15578236	.	+	0	transcript_id "Ledus.S1G163200.t1"; gene_id "Ledus.S1G163200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4068.t1 is derived from g1504.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14423789	14429957	.	-	.	Ledus.S1G148900
Ledus.S1	AUGUSTUS	transcript	14423789	14429957	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	stop_codon	14423786	14423788	.	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14423789	14423962	1	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14423789	14423962	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14423963	14424043	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14424044	14424115	0.8	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14424044	14424115	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14424116	14424220	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14424221	14424302	0.94	-	1	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14424221	14424302	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14424303	14424408	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14424409	14424467	0.8	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14424409	14424467	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14424468	14424587	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14424588	14424624	1	-	1	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14424588	14424624	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14424625	14424708	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14424709	14424866	1	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14424709	14424866	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14424867	14425125	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14425126	14425363	0.91	-	1	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14425126	14425363	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14425364	14425475	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14425476	14425819	0.86	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14425476	14425819	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14425820	14425942	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14425943	14426452	0.82	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14425943	14426452	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14426453	14426689	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14426690	14426801	0.97	-	1	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14426690	14426801	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14426802	14426871	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14426872	14427403	1	-	2	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14426872	14427403	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14427404	14427502	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14427503	14427566	1	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14427503	14427566	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14427567	14427648	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14427649	14427739	0.98	-	1	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14427649	14427739	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14427740	14427838	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14427839	14427995	0.93	-	2	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14427839	14427995	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14427996	14428344	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14428345	14428375	0.93	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14428345	14428375	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14428376	14428646	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14428647	14428732	0.88	-	2	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14428647	14428732	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14428733	14429026	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14429027	14429203	0.92	-	2	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14429027	14429203	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14429204	14429287	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14429288	14429375	1	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14429288	14429375	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14429376	14429452	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14429453	14429575	1	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14429453	14429575	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	intron	14429576	14429672	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	CDS	14429673	14429957	0.68	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	exon	14429673	14429957	.	-	.	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
Ledus.S1	AUGUSTUS	start_codon	14429955	14429957	.	-	0	transcript_id "Ledus.S1G148900.t1"; gene_id "Ledus.S1G148900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg27.t1 is derived from g6456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C17	AUGUSTUS	gene	59579	63820	.	-	.	Ledus.C17G000500
Ledus.C17	AUGUSTUS	transcript	59579	63820	.	-	.	transcript_id "Ledus.C17G000500.t1"; gene_id "Ledus.C17G000500"
Ledus.C17	AUGUSTUS	stop_codon	59576	59578	.	-	0	transcript_id "Ledus.C17G000500.t1"; gene_id "Ledus.C17G000500"
Ledus.C17	AUGUSTUS	CDS	59579	63820	0.71	-	0	transcript_id "Ledus.C17G000500.t1"; gene_id "Ledus.C17G000500"
Ledus.C17	AUGUSTUS	exon	59579	63820	.	-	.	transcript_id "Ledus.C17G000500.t1"; gene_id "Ledus.C17G000500"
Ledus.C17	AUGUSTUS	start_codon	63818	63820	.	-	0	transcript_id "Ledus.C17G000500.t1"; gene_id "Ledus.C17G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11982.t1 is derived from g5601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8286608	8286814	.	+	.	Ledus.S4G113800
Ledus.S4	AUGUSTUS	transcript	8286608	8286814	.	+	.	transcript_id "Ledus.S4G113800.t1"; gene_id "Ledus.S4G113800"
Ledus.S4	AUGUSTUS	start_codon	8286608	8286610	.	+	0	transcript_id "Ledus.S4G113800.t1"; gene_id "Ledus.S4G113800"
Ledus.S4	AUGUSTUS	CDS	8286608	8286814	0.37	+	0	transcript_id "Ledus.S4G113800.t1"; gene_id "Ledus.S4G113800"
Ledus.S4	AUGUSTUS	exon	8286608	8286814	.	+	.	transcript_id "Ledus.S4G113800.t1"; gene_id "Ledus.S4G113800"
Ledus.S4	AUGUSTUS	stop_codon	8286815	8286817	.	+	0	transcript_id "Ledus.S4G113800.t1"; gene_id "Ledus.S4G113800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11945.t1 is derived from g5564.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7927308	7932572	.	+	.	Ledus.S4G110100
Ledus.S4	AUGUSTUS	transcript	7927308	7932572	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	start_codon	7927308	7927310	.	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7927308	7927378	1	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7927308	7927378	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7927379	7927546	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7927547	7927732	1	+	1	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7927547	7927732	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7927733	7927826	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7927827	7927952	1	+	1	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7927827	7927952	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7927953	7928154	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7928155	7928317	1	+	1	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7928155	7928317	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7928318	7928459	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7928460	7928653	1	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7928460	7928653	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7928654	7928778	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7928779	7928971	1	+	1	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7928779	7928971	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7928972	7929061	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7929062	7929133	1	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7929062	7929133	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7929134	7929420	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7929421	7929650	1	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7929421	7929650	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7929651	7929749	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7929750	7929864	1	+	1	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7929750	7929864	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7929865	7930166	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7930167	7930241	1	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7930167	7930241	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7930242	7930403	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7930404	7930544	0.99	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7930404	7930544	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7930545	7930654	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7930655	7930858	0.99	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7930655	7930858	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7930859	7930994	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7930995	7931090	0.88	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7930995	7931090	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7931091	7931274	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7931275	7931330	0.97	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7931275	7931330	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7931331	7931415	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7931416	7931540	1	+	1	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7931416	7931540	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7931541	7931627	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7931628	7931744	1	+	2	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7931628	7931744	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7931745	7931837	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7931838	7931971	1	+	2	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7931838	7931971	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7931972	7932056	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7932057	7932194	0.86	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7932057	7932194	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7932195	7932282	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7932283	7932384	1	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7932283	7932384	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7932385	7932473	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7932474	7932572	0.95	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7932474	7932572	.	+	.	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	stop_codon	7932573	7932575	.	+	0	transcript_id "Ledus.S4G110100.t1"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	transcript	7927308	7932572	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	start_codon	7927308	7927310	.	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7927308	7927378	1	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7927308	7927378	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7927379	7927546	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7927547	7927732	1	+	1	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7927547	7927732	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7927733	7927826	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7927827	7927952	1	+	1	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7927827	7927952	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7927953	7928154	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7928155	7928317	1	+	1	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7928155	7928317	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7928318	7928459	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7928460	7928653	1	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7928460	7928653	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7928654	7928778	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7928779	7928971	1	+	1	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7928779	7928971	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7928972	7929061	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7929062	7929202	1	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7929062	7929202	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7929203	7929420	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7929421	7929650	1	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7929421	7929650	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7929651	7929749	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7929750	7929864	1	+	1	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7929750	7929864	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7929865	7930166	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7930167	7930241	1	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7930167	7930241	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7930242	7930403	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7930404	7930544	0.98	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7930404	7930544	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7930545	7930654	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7930655	7930858	0.98	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7930655	7930858	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7930859	7930994	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7930995	7931090	0.9	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7930995	7931090	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7931091	7931274	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7931275	7931330	0.96	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7931275	7931330	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7931331	7931415	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7931416	7931540	1	+	1	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7931416	7931540	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7931541	7931627	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7931628	7931744	1	+	2	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7931628	7931744	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7931745	7931837	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7931838	7931971	1	+	2	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7931838	7931971	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7931972	7932056	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7932057	7932194	0.8	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7932057	7932194	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7932195	7932282	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7932283	7932384	1	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7932283	7932384	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	intron	7932385	7932473	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	CDS	7932474	7932572	0.96	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	exon	7932474	7932572	.	+	.	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
Ledus.S4	AUGUSTUS	stop_codon	7932573	7932575	.	+	0	transcript_id "Ledus.S4G110100.t2"; gene_id "Ledus.S4G110100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8363.t1 is derived from g13035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11133013	11136124	.	+	.	Ledus.S5G114100
Ledus.S5	AUGUSTUS	transcript	11133013	11136124	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	start_codon	11133013	11133015	.	+	0	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11133013	11133157	0.96	+	0	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11133013	11133157	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11133158	11133255	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11133256	11133296	0.52	+	2	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11133256	11133296	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11133297	11133403	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11133404	11133464	1	+	0	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11133404	11133464	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11133465	11133553	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11133554	11133656	0.96	+	2	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11133554	11133656	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11133657	11133819	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11133820	11133862	0.72	+	1	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11133820	11133862	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11133863	11133954	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11133955	11134008	1	+	0	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11133955	11134008	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11134009	11134148	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11134149	11134211	1	+	0	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11134149	11134211	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11134212	11134302	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11134303	11134352	1	+	0	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11134303	11134352	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11134353	11134470	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11134471	11134546	1	+	1	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11134471	11134546	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11134547	11134674	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11134675	11134902	1	+	0	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11134675	11134902	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11134903	11135030	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11135031	11135118	1	+	0	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11135031	11135118	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11135119	11135197	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11135198	11135283	1	+	2	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11135198	11135283	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11135284	11135383	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11135384	11135491	1	+	0	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11135384	11135491	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11135492	11135631	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11135632	11135676	1	+	0	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11135632	11135676	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11135677	11135786	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11135787	11135875	0.95	+	0	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11135787	11135875	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	intron	11135876	11135964	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	CDS	11135965	11136124	1	+	1	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	exon	11135965	11136124	.	+	.	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
Ledus.S5	AUGUSTUS	stop_codon	11136125	11136127	.	+	0	transcript_id "Ledus.S5G114100.t1"; gene_id "Ledus.S5G114100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5233.t1 is derived from g2672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22615170	22616830	.	-	.	Ledus.S1G265400
Ledus.S1	AUGUSTUS	transcript	22615170	22616830	.	-	.	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	stop_codon	22615167	22615169	.	-	0	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	CDS	22615170	22615642	0.74	-	2	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	exon	22615170	22615642	.	-	.	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	intron	22615643	22615719	.	-	.	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	CDS	22615720	22615807	0.98	-	0	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	exon	22615720	22615807	.	-	.	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	intron	22615808	22615894	.	-	.	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	CDS	22615895	22616125	0.71	-	0	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	exon	22615895	22616125	.	-	.	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	intron	22616126	22616211	.	-	.	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	CDS	22616212	22616404	1	-	1	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	exon	22616212	22616404	.	-	.	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	intron	22616405	22616485	.	-	.	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	CDS	22616486	22616664	1	-	0	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	exon	22616486	22616664	.	-	.	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	intron	22616665	22616743	.	-	.	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	CDS	22616744	22616830	0.93	-	0	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	exon	22616744	22616830	.	-	.	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
Ledus.S1	AUGUSTUS	start_codon	22616828	22616830	.	-	0	transcript_id "Ledus.S1G265400.t1"; gene_id "Ledus.S1G265400"
# This transcript jg2204.t2 is derived from g9067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2205.t1 is derived from g9068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15982477	15983258	.	+	.	Ledus.S2G208700
Ledus.S2	AUGUSTUS	transcript	15982477	15983258	.	+	.	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	start_codon	15982477	15982479	.	+	0	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	CDS	15982477	15982568	0.99	+	0	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	exon	15982477	15982568	.	+	.	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	intron	15982569	15982709	.	+	.	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	CDS	15982710	15982812	0.92	+	1	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	exon	15982710	15982812	.	+	.	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	intron	15982813	15982959	.	+	.	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	CDS	15982960	15983066	0.77	+	0	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	exon	15982960	15983066	.	+	.	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	intron	15983067	15983149	.	+	.	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	CDS	15983150	15983258	0.79	+	1	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	exon	15983150	15983258	.	+	.	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
Ledus.S2	AUGUSTUS	stop_codon	15983259	15983261	.	+	0	transcript_id "Ledus.S2G208700.t1"; gene_id "Ledus.S2G208700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9454.t1 is derived from g10484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7059971	7063514	.	-	.	Ledus.S3G093100
Ledus.S3	AUGUSTUS	transcript	7059971	7063514	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	stop_codon	7059968	7059970	.	-	0	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	CDS	7059971	7060339	1	-	0	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	exon	7059971	7060339	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	intron	7060340	7060442	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	CDS	7060443	7060679	0.8	-	0	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	exon	7060443	7060679	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	intron	7060680	7060780	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	CDS	7060781	7061151	0.93	-	2	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	exon	7060781	7061151	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	intron	7061152	7061219	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	CDS	7061220	7061322	1	-	0	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	exon	7061220	7061322	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	intron	7061323	7061409	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	CDS	7061410	7061682	1	-	0	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	exon	7061410	7061682	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	intron	7061683	7061770	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	CDS	7061771	7061878	1	-	0	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	exon	7061771	7061878	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	intron	7061879	7061958	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	CDS	7061959	7062185	1	-	2	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	exon	7061959	7062185	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	intron	7062186	7062285	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	CDS	7062286	7062574	1	-	0	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	exon	7062286	7062574	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	intron	7062575	7062657	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	CDS	7062658	7062901	1	-	1	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	exon	7062658	7062901	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	intron	7062902	7062999	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	CDS	7063000	7063301	0.72	-	0	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	exon	7063000	7063301	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	intron	7063302	7063373	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	CDS	7063374	7063514	0.37	-	0	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	exon	7063374	7063514	.	-	.	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
Ledus.S3	AUGUSTUS	start_codon	7063512	7063514	.	-	0	transcript_id "Ledus.S3G093100.t1"; gene_id "Ledus.S3G093100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6671.t1 is derived from g4114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33059328	33059874	.	-	.	Ledus.S1G409200
Ledus.S1	AUGUSTUS	transcript	33059328	33059874	.	-	.	transcript_id "Ledus.S1G409200.t1"; gene_id "Ledus.S1G409200"
Ledus.S1	AUGUSTUS	stop_codon	33059325	33059327	.	-	0	transcript_id "Ledus.S1G409200.t1"; gene_id "Ledus.S1G409200"
Ledus.S1	AUGUSTUS	CDS	33059328	33059382	1	-	1	transcript_id "Ledus.S1G409200.t1"; gene_id "Ledus.S1G409200"
Ledus.S1	AUGUSTUS	exon	33059328	33059382	.	-	.	transcript_id "Ledus.S1G409200.t1"; gene_id "Ledus.S1G409200"
Ledus.S1	AUGUSTUS	intron	33059383	33059468	.	-	.	transcript_id "Ledus.S1G409200.t1"; gene_id "Ledus.S1G409200"
Ledus.S1	AUGUSTUS	CDS	33059469	33059638	1	-	0	transcript_id "Ledus.S1G409200.t1"; gene_id "Ledus.S1G409200"
Ledus.S1	AUGUSTUS	exon	33059469	33059638	.	-	.	transcript_id "Ledus.S1G409200.t1"; gene_id "Ledus.S1G409200"
Ledus.S1	AUGUSTUS	intron	33059639	33059733	.	-	.	transcript_id "Ledus.S1G409200.t1"; gene_id "Ledus.S1G409200"
Ledus.S1	AUGUSTUS	CDS	33059734	33059874	1	-	0	transcript_id "Ledus.S1G409200.t1"; gene_id "Ledus.S1G409200"
Ledus.S1	AUGUSTUS	exon	33059734	33059874	.	-	.	transcript_id "Ledus.S1G409200.t1"; gene_id "Ledus.S1G409200"
Ledus.S1	AUGUSTUS	start_codon	33059872	33059874	.	-	0	transcript_id "Ledus.S1G409200.t1"; gene_id "Ledus.S1G409200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12348.t1 is derived from g5969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11345967	11348231	.	+	.	Ledus.S4G150400
Ledus.S4	AUGUSTUS	transcript	11345967	11348231	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	start_codon	11345967	11345969	.	+	0	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	CDS	11345967	11346222	0.92	+	0	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	exon	11345967	11346222	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	intron	11346223	11346401	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	CDS	11346402	11346517	1	+	2	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	exon	11346402	11346517	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	intron	11346518	11346605	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	CDS	11346606	11346803	1	+	0	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	exon	11346606	11346803	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	intron	11346804	11346903	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	CDS	11346904	11347008	1	+	0	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	exon	11346904	11347008	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	intron	11347009	11347108	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	CDS	11347109	11347171	1	+	0	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	exon	11347109	11347171	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	intron	11347172	11347406	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	CDS	11347407	11347518	0.99	+	0	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	exon	11347407	11347518	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	intron	11347519	11347631	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	CDS	11347632	11347693	0.99	+	2	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	exon	11347632	11347693	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	intron	11347694	11347859	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	CDS	11347860	11348042	0.64	+	0	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	exon	11347860	11348042	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	intron	11348043	11348144	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	CDS	11348145	11348231	0.53	+	0	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	exon	11348145	11348231	.	+	.	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
Ledus.S4	AUGUSTUS	stop_codon	11348232	11348234	.	+	0	transcript_id "Ledus.S4G150400.t1"; gene_id "Ledus.S4G150400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3765.t1 is derived from g1201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11784988	11785407	.	-	.	Ledus.S1G118600
Ledus.S1	AUGUSTUS	transcript	11784988	11785407	.	-	.	transcript_id "Ledus.S1G118600.t1"; gene_id "Ledus.S1G118600"
Ledus.S1	AUGUSTUS	stop_codon	11784985	11784987	.	-	0	transcript_id "Ledus.S1G118600.t1"; gene_id "Ledus.S1G118600"
Ledus.S1	AUGUSTUS	CDS	11784988	11785407	0.61	-	0	transcript_id "Ledus.S1G118600.t1"; gene_id "Ledus.S1G118600"
Ledus.S1	AUGUSTUS	exon	11784988	11785407	.	-	.	transcript_id "Ledus.S1G118600.t1"; gene_id "Ledus.S1G118600"
Ledus.S1	AUGUSTUS	start_codon	11785405	11785407	.	-	0	transcript_id "Ledus.S1G118600.t1"; gene_id "Ledus.S1G118600"
# This transcript jg2381.t2 is derived from g9244.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2382.t1 is derived from g9245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17829689	17832268	.	-	.	Ledus.S2G226400
Ledus.S2	AUGUSTUS	transcript	17829689	17832268	.	-	.	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	stop_codon	17829686	17829688	.	-	0	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	CDS	17829689	17829828	0.94	-	2	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	exon	17829689	17829828	.	-	.	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	intron	17829829	17829904	.	-	.	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	CDS	17829905	17830253	1	-	0	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	exon	17829905	17830253	.	-	.	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	intron	17830254	17831150	.	-	.	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	CDS	17831151	17831915	1	-	0	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	exon	17831151	17831915	.	-	.	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	intron	17831916	17831995	.	-	.	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	CDS	17831996	17832268	0.78	-	0	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	exon	17831996	17832268	.	-	.	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
Ledus.S2	AUGUSTUS	start_codon	17832266	17832268	.	-	0	transcript_id "Ledus.S2G226400.t1"; gene_id "Ledus.S2G226400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9725.t1 is derived from g10755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9432655	9433854	.	-	.	Ledus.S3G120200
Ledus.S3	AUGUSTUS	transcript	9432655	9433854	.	-	.	transcript_id "Ledus.S3G120200.t1"; gene_id "Ledus.S3G120200"
Ledus.S3	AUGUSTUS	stop_codon	9432652	9432654	.	-	0	transcript_id "Ledus.S3G120200.t1"; gene_id "Ledus.S3G120200"
Ledus.S3	AUGUSTUS	CDS	9432655	9433854	0.98	-	0	transcript_id "Ledus.S3G120200.t1"; gene_id "Ledus.S3G120200"
Ledus.S3	AUGUSTUS	exon	9432655	9433854	.	-	.	transcript_id "Ledus.S3G120200.t1"; gene_id "Ledus.S3G120200"
Ledus.S3	AUGUSTUS	start_codon	9433852	9433854	.	-	0	transcript_id "Ledus.S3G120200.t1"; gene_id "Ledus.S3G120200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5467.t1 is derived from g2906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24450667	24452238	.	+	.	Ledus.S1G288800
Ledus.S1	AUGUSTUS	transcript	24450667	24452238	.	+	.	transcript_id "Ledus.S1G288800.t1"; gene_id "Ledus.S1G288800"
Ledus.S1	AUGUSTUS	start_codon	24450667	24450669	.	+	0	transcript_id "Ledus.S1G288800.t1"; gene_id "Ledus.S1G288800"
Ledus.S1	AUGUSTUS	CDS	24450667	24451037	0.5	+	0	transcript_id "Ledus.S1G288800.t1"; gene_id "Ledus.S1G288800"
Ledus.S1	AUGUSTUS	exon	24450667	24451037	.	+	.	transcript_id "Ledus.S1G288800.t1"; gene_id "Ledus.S1G288800"
Ledus.S1	AUGUSTUS	intron	24451038	24451776	.	+	.	transcript_id "Ledus.S1G288800.t1"; gene_id "Ledus.S1G288800"
Ledus.S1	AUGUSTUS	CDS	24451777	24451957	1	+	1	transcript_id "Ledus.S1G288800.t1"; gene_id "Ledus.S1G288800"
Ledus.S1	AUGUSTUS	exon	24451777	24451957	.	+	.	transcript_id "Ledus.S1G288800.t1"; gene_id "Ledus.S1G288800"
Ledus.S1	AUGUSTUS	intron	24451958	24452181	.	+	.	transcript_id "Ledus.S1G288800.t1"; gene_id "Ledus.S1G288800"
Ledus.S1	AUGUSTUS	CDS	24452182	24452238	1	+	0	transcript_id "Ledus.S1G288800.t1"; gene_id "Ledus.S1G288800"
Ledus.S1	AUGUSTUS	exon	24452182	24452238	.	+	.	transcript_id "Ledus.S1G288800.t1"; gene_id "Ledus.S1G288800"
Ledus.S1	AUGUSTUS	stop_codon	24452239	24452241	.	+	0	transcript_id "Ledus.S1G288800.t1"; gene_id "Ledus.S1G288800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11865.t1 is derived from g5484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7431168	7432334	.	+	.	Ledus.S4G102100
Ledus.S4	AUGUSTUS	transcript	7431168	7432334	.	+	.	transcript_id "Ledus.S4G102100.t1"; gene_id "Ledus.S4G102100"
Ledus.S4	AUGUSTUS	start_codon	7431168	7431170	.	+	0	transcript_id "Ledus.S4G102100.t1"; gene_id "Ledus.S4G102100"
Ledus.S4	AUGUSTUS	CDS	7431168	7432334	1	+	0	transcript_id "Ledus.S4G102100.t1"; gene_id "Ledus.S4G102100"
Ledus.S4	AUGUSTUS	exon	7431168	7432334	.	+	.	transcript_id "Ledus.S4G102100.t1"; gene_id "Ledus.S4G102100"
Ledus.S4	AUGUSTUS	stop_codon	7432335	7432337	.	+	0	transcript_id "Ledus.S4G102100.t1"; gene_id "Ledus.S4G102100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg150.t1 is derived from g7011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	297026	297526	.	-	.	Ledus.S2G003200
Ledus.S2	AUGUSTUS	transcript	297026	297526	.	-	.	transcript_id "Ledus.S2G003200.t1"; gene_id "Ledus.S2G003200"
Ledus.S2	AUGUSTUS	stop_codon	297023	297025	.	-	0	transcript_id "Ledus.S2G003200.t1"; gene_id "Ledus.S2G003200"
Ledus.S2	AUGUSTUS	CDS	297026	297526	0.47	-	0	transcript_id "Ledus.S2G003200.t1"; gene_id "Ledus.S2G003200"
Ledus.S2	AUGUSTUS	exon	297026	297526	.	-	.	transcript_id "Ledus.S2G003200.t1"; gene_id "Ledus.S2G003200"
Ledus.S2	AUGUSTUS	start_codon	297524	297526	.	-	0	transcript_id "Ledus.S2G003200.t1"; gene_id "Ledus.S2G003200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1158.t1 is derived from g8019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7982938	7987092	.	-	.	Ledus.S2G104000
Ledus.S2	AUGUSTUS	transcript	7982938	7987092	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	stop_codon	7982935	7982937	.	-	0	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	CDS	7982938	7983159	1	-	0	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	exon	7982938	7983159	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	intron	7983160	7983275	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	CDS	7983276	7983332	1	-	0	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	exon	7983276	7983332	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	intron	7983333	7983513	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	CDS	7983514	7983645	1	-	0	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	exon	7983514	7983645	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	intron	7983646	7983931	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	CDS	7983932	7984010	1	-	1	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	exon	7983932	7984010	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	intron	7984011	7984091	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	CDS	7984092	7984177	1	-	0	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	exon	7984092	7984177	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	intron	7984178	7984294	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	CDS	7984295	7984453	1	-	0	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	exon	7984295	7984453	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	intron	7984454	7984579	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	CDS	7984580	7984885	0.99	-	0	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	exon	7984580	7984885	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	intron	7984886	7984987	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	CDS	7984988	7985089	1	-	0	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	exon	7984988	7985089	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	intron	7985090	7985231	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	CDS	7985232	7985404	1	-	2	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	exon	7985232	7985404	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	intron	7985405	7985714	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	CDS	7985715	7987092	0.52	-	0	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	exon	7985715	7987092	.	-	.	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
Ledus.S2	AUGUSTUS	start_codon	7987090	7987092	.	-	0	transcript_id "Ledus.S2G104000.t1"; gene_id "Ledus.S2G104000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg610.t1 is derived from g7471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3623020	3629325	.	+	.	Ledus.S2G049200
Ledus.S2	AUGUSTUS	transcript	3623020	3629325	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	start_codon	3623020	3623022	.	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3623020	3623078	0.76	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3623020	3623078	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3623079	3623151	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3623152	3623339	1	+	1	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3623152	3623339	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3623340	3623762	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3623763	3623862	1	+	2	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3623763	3623862	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3623863	3623989	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3623990	3624098	1	+	1	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3623990	3624098	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3624099	3624250	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3624251	3625786	0.99	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3624251	3625786	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3625787	3626010	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3626011	3626253	0.99	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3626011	3626253	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3626254	3626361	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3626362	3626475	0.98	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3626362	3626475	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3626476	3626550	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3626551	3626676	0.97	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3626551	3626676	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3626677	3626799	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3626800	3627039	0.97	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3626800	3627039	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3627040	3627173	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3627174	3627458	0.98	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3627174	3627458	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3627459	3627552	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3627553	3627774	0.96	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3627553	3627774	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3627775	3627889	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3627890	3628051	0.98	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3627890	3628051	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3628052	3628215	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3628216	3628350	1	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3628216	3628350	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3628351	3628475	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3628476	3628712	1	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3628476	3628712	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3628713	3628789	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3628790	3628963	0.69	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3628790	3628963	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	intron	3628964	3629085	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	CDS	3629086	3629325	1	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	exon	3629086	3629325	.	+	.	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
Ledus.S2	AUGUSTUS	stop_codon	3629326	3629328	.	+	0	transcript_id "Ledus.S2G049200.t1"; gene_id "Ledus.S2G049200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2153.t1 is derived from g9016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15311075	15312191	.	+	.	Ledus.S2G203500
Ledus.S2	AUGUSTUS	transcript	15311075	15312191	.	+	.	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	start_codon	15311075	15311077	.	+	0	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	CDS	15311075	15311128	0.49	+	0	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	exon	15311075	15311128	.	+	.	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	intron	15311129	15311214	.	+	.	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	CDS	15311215	15311547	0.99	+	0	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	exon	15311215	15311547	.	+	.	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	intron	15311548	15311624	.	+	.	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	CDS	15311625	15311711	1	+	0	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	exon	15311625	15311711	.	+	.	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	intron	15311712	15311819	.	+	.	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	CDS	15311820	15311953	1	+	0	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	exon	15311820	15311953	.	+	.	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	intron	15311954	15312088	.	+	.	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	CDS	15312089	15312191	1	+	1	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	exon	15312089	15312191	.	+	.	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
Ledus.S2	AUGUSTUS	stop_codon	15312192	15312194	.	+	0	transcript_id "Ledus.S2G203500.t1"; gene_id "Ledus.S2G203500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7359.t1 is derived from g12030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1442426	1443096	.	-	.	Ledus.S5G013700
Ledus.S5	AUGUSTUS	transcript	1442426	1443096	.	-	.	transcript_id "Ledus.S5G013700.t1"; gene_id "Ledus.S5G013700"
Ledus.S5	AUGUSTUS	stop_codon	1442423	1442425	.	-	0	transcript_id "Ledus.S5G013700.t1"; gene_id "Ledus.S5G013700"
Ledus.S5	AUGUSTUS	CDS	1442426	1442566	1	-	0	transcript_id "Ledus.S5G013700.t1"; gene_id "Ledus.S5G013700"
Ledus.S5	AUGUSTUS	exon	1442426	1442566	.	-	.	transcript_id "Ledus.S5G013700.t1"; gene_id "Ledus.S5G013700"
Ledus.S5	AUGUSTUS	intron	1442567	1442648	.	-	.	transcript_id "Ledus.S5G013700.t1"; gene_id "Ledus.S5G013700"
Ledus.S5	AUGUSTUS	CDS	1442649	1442792	1	-	0	transcript_id "Ledus.S5G013700.t1"; gene_id "Ledus.S5G013700"
Ledus.S5	AUGUSTUS	exon	1442649	1442792	.	-	.	transcript_id "Ledus.S5G013700.t1"; gene_id "Ledus.S5G013700"
Ledus.S5	AUGUSTUS	intron	1442793	1442892	.	-	.	transcript_id "Ledus.S5G013700.t1"; gene_id "Ledus.S5G013700"
Ledus.S5	AUGUSTUS	CDS	1442893	1443096	0.89	-	0	transcript_id "Ledus.S5G013700.t1"; gene_id "Ledus.S5G013700"
Ledus.S5	AUGUSTUS	exon	1442893	1443096	.	-	.	transcript_id "Ledus.S5G013700.t1"; gene_id "Ledus.S5G013700"
Ledus.S5	AUGUSTUS	start_codon	1443094	1443096	.	-	0	transcript_id "Ledus.S5G013700.t1"; gene_id "Ledus.S5G013700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11960.t1 is derived from g5579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8035576	8037484	.	+	.	Ledus.S4G111600
Ledus.S4	AUGUSTUS	transcript	8035576	8037484	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	start_codon	8035576	8035578	.	+	0	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	CDS	8035576	8035731	0.77	+	0	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	exon	8035576	8035731	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	intron	8035732	8035812	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	CDS	8035813	8036124	1	+	0	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	exon	8035813	8036124	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	intron	8036125	8036208	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	CDS	8036209	8036408	1	+	0	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	exon	8036209	8036408	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	intron	8036409	8036541	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	CDS	8036542	8036777	1	+	1	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	exon	8036542	8036777	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	intron	8036778	8036874	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	CDS	8036875	8037017	1	+	2	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	exon	8036875	8037017	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	intron	8037018	8037100	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	CDS	8037101	8037172	1	+	0	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	exon	8037101	8037172	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	intron	8037173	8037265	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	CDS	8037266	8037484	1	+	0	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	exon	8037266	8037484	.	+	.	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
Ledus.S4	AUGUSTUS	stop_codon	8037485	8037487	.	+	0	transcript_id "Ledus.S4G111600.t1"; gene_id "Ledus.S4G111600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8565.t1 is derived from g9595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	199777	203248	.	+	.	Ledus.S3G004200
Ledus.S3	AUGUSTUS	transcript	199777	203248	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	start_codon	199777	199779	.	+	0	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	CDS	199777	199836	0.99	+	0	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	exon	199777	199836	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	intron	199837	200000	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	CDS	200001	200092	1	+	0	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	exon	200001	200092	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	intron	200093	200214	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	CDS	200215	200353	1	+	1	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	exon	200215	200353	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	intron	200354	200502	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	CDS	200503	200637	1	+	0	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	exon	200503	200637	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	intron	200638	200778	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	CDS	200779	200821	1	+	0	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	exon	200779	200821	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	intron	200822	200949	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	CDS	200950	201002	1	+	2	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	exon	200950	201002	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	intron	201003	201167	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	CDS	201168	201281	1	+	0	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	exon	201168	201281	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	intron	201282	201405	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	CDS	201406	202590	0.99	+	0	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	exon	201406	202590	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	intron	202591	202677	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	CDS	202678	202793	0.65	+	0	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	exon	202678	202793	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	intron	202794	203097	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	CDS	203098	203248	1	+	1	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	exon	203098	203248	.	+	.	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
Ledus.S3	AUGUSTUS	stop_codon	203249	203251	.	+	0	transcript_id "Ledus.S3G004200.t1"; gene_id "Ledus.S3G004200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8755.t1 is derived from g9785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1850847	1852696	.	+	.	Ledus.S3G023200
Ledus.S3	AUGUSTUS	transcript	1850847	1852696	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	start_codon	1850847	1850849	.	+	0	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	CDS	1850847	1851294	0.91	+	0	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	exon	1850847	1851294	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	intron	1851295	1851383	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	CDS	1851384	1851461	1	+	2	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	exon	1851384	1851461	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	intron	1851462	1851545	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	CDS	1851546	1851595	0.99	+	2	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	exon	1851546	1851595	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	intron	1851596	1851715	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	CDS	1851716	1851779	1	+	0	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	exon	1851716	1851779	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	intron	1851780	1852001	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	CDS	1852002	1852057	1	+	2	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	exon	1852002	1852057	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	intron	1852058	1852150	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	CDS	1852151	1852231	1	+	0	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	exon	1852151	1852231	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	intron	1852232	1852329	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	CDS	1852330	1852407	1	+	0	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	exon	1852330	1852407	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	intron	1852408	1852534	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	CDS	1852535	1852696	0.99	+	0	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	exon	1852535	1852696	.	+	.	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
Ledus.S3	AUGUSTUS	stop_codon	1852697	1852699	.	+	0	transcript_id "Ledus.S3G023200.t1"; gene_id "Ledus.S3G023200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10223.t1 is derived from g11253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13648809	13650677	.	+	.	Ledus.S3G170000
Ledus.S3	AUGUSTUS	transcript	13648809	13650677	.	+	.	transcript_id "Ledus.S3G170000.t1"; gene_id "Ledus.S3G170000"
Ledus.S3	AUGUSTUS	start_codon	13648809	13648811	.	+	0	transcript_id "Ledus.S3G170000.t1"; gene_id "Ledus.S3G170000"
Ledus.S3	AUGUSTUS	CDS	13648809	13650677	0.99	+	0	transcript_id "Ledus.S3G170000.t1"; gene_id "Ledus.S3G170000"
Ledus.S3	AUGUSTUS	exon	13648809	13650677	.	+	.	transcript_id "Ledus.S3G170000.t1"; gene_id "Ledus.S3G170000"
Ledus.S3	AUGUSTUS	stop_codon	13650678	13650680	.	+	0	transcript_id "Ledus.S3G170000.t1"; gene_id "Ledus.S3G170000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1813.t1 is derived from g8676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12722685	12723186	.	-	.	Ledus.S2G169500
Ledus.S2	AUGUSTUS	transcript	12722685	12723186	.	-	.	transcript_id "Ledus.S2G169500.t1"; gene_id "Ledus.S2G169500"
Ledus.S2	AUGUSTUS	stop_codon	12722682	12722684	.	-	0	transcript_id "Ledus.S2G169500.t1"; gene_id "Ledus.S2G169500"
Ledus.S2	AUGUSTUS	CDS	12722685	12722802	0.32	-	1	transcript_id "Ledus.S2G169500.t1"; gene_id "Ledus.S2G169500"
Ledus.S2	AUGUSTUS	exon	12722685	12722802	.	-	.	transcript_id "Ledus.S2G169500.t1"; gene_id "Ledus.S2G169500"
Ledus.S2	AUGUSTUS	intron	12722803	12722983	.	-	.	transcript_id "Ledus.S2G169500.t1"; gene_id "Ledus.S2G169500"
Ledus.S2	AUGUSTUS	CDS	12722984	12723186	0.5	-	0	transcript_id "Ledus.S2G169500.t1"; gene_id "Ledus.S2G169500"
Ledus.S2	AUGUSTUS	exon	12722984	12723186	.	-	.	transcript_id "Ledus.S2G169500.t1"; gene_id "Ledus.S2G169500"
Ledus.S2	AUGUSTUS	start_codon	12723184	12723186	.	-	0	transcript_id "Ledus.S2G169500.t1"; gene_id "Ledus.S2G169500"
# This transcript jg2307.t2 is derived from g9170.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2308.t1 is derived from g9171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17120921	17122439	.	-	.	Ledus.S2G219000
Ledus.S2	AUGUSTUS	transcript	17120921	17122439	.	-	.	transcript_id "Ledus.S2G219000.t1"; gene_id "Ledus.S2G219000"
Ledus.S2	AUGUSTUS	stop_codon	17120918	17120920	.	-	0	transcript_id "Ledus.S2G219000.t1"; gene_id "Ledus.S2G219000"
Ledus.S2	AUGUSTUS	CDS	17120921	17121269	0.99	-	1	transcript_id "Ledus.S2G219000.t1"; gene_id "Ledus.S2G219000"
Ledus.S2	AUGUSTUS	exon	17120921	17121269	.	-	.	transcript_id "Ledus.S2G219000.t1"; gene_id "Ledus.S2G219000"
Ledus.S2	AUGUSTUS	intron	17121270	17121360	.	-	.	transcript_id "Ledus.S2G219000.t1"; gene_id "Ledus.S2G219000"
Ledus.S2	AUGUSTUS	CDS	17121361	17122439	0.55	-	0	transcript_id "Ledus.S2G219000.t1"; gene_id "Ledus.S2G219000"
Ledus.S2	AUGUSTUS	exon	17121361	17122439	.	-	.	transcript_id "Ledus.S2G219000.t1"; gene_id "Ledus.S2G219000"
Ledus.S2	AUGUSTUS	start_codon	17122437	17122439	.	-	0	transcript_id "Ledus.S2G219000.t1"; gene_id "Ledus.S2G219000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1161.t1 is derived from g8022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8001562	8001951	.	+	.	Ledus.S2G104300
Ledus.S2	AUGUSTUS	transcript	8001562	8001951	.	+	.	transcript_id "Ledus.S2G104300.t1"; gene_id "Ledus.S2G104300"
Ledus.S2	AUGUSTUS	start_codon	8001562	8001564	.	+	0	transcript_id "Ledus.S2G104300.t1"; gene_id "Ledus.S2G104300"
Ledus.S2	AUGUSTUS	CDS	8001562	8001951	0.57	+	0	transcript_id "Ledus.S2G104300.t1"; gene_id "Ledus.S2G104300"
Ledus.S2	AUGUSTUS	exon	8001562	8001951	.	+	.	transcript_id "Ledus.S2G104300.t1"; gene_id "Ledus.S2G104300"
Ledus.S2	AUGUSTUS	stop_codon	8001952	8001954	.	+	0	transcript_id "Ledus.S2G104300.t1"; gene_id "Ledus.S2G104300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3466.t1 is derived from g901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8508211	8509308	.	-	.	Ledus.S1G088700
Ledus.S1	AUGUSTUS	transcript	8508211	8509308	.	-	.	transcript_id "Ledus.S1G088700.t1"; gene_id "Ledus.S1G088700"
Ledus.S1	AUGUSTUS	stop_codon	8508208	8508210	.	-	0	transcript_id "Ledus.S1G088700.t1"; gene_id "Ledus.S1G088700"
Ledus.S1	AUGUSTUS	CDS	8508211	8508384	0.95	-	0	transcript_id "Ledus.S1G088700.t1"; gene_id "Ledus.S1G088700"
Ledus.S1	AUGUSTUS	exon	8508211	8508384	.	-	.	transcript_id "Ledus.S1G088700.t1"; gene_id "Ledus.S1G088700"
Ledus.S1	AUGUSTUS	intron	8508385	8508465	.	-	.	transcript_id "Ledus.S1G088700.t1"; gene_id "Ledus.S1G088700"
Ledus.S1	AUGUSTUS	CDS	8508466	8509308	0.58	-	0	transcript_id "Ledus.S1G088700.t1"; gene_id "Ledus.S1G088700"
Ledus.S1	AUGUSTUS	exon	8508466	8509308	.	-	.	transcript_id "Ledus.S1G088700.t1"; gene_id "Ledus.S1G088700"
Ledus.S1	AUGUSTUS	start_codon	8509306	8509308	.	-	0	transcript_id "Ledus.S1G088700.t1"; gene_id "Ledus.S1G088700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1325.t1 is derived from g8186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9284067	9285587	.	-	.	Ledus.S2G120700
Ledus.S2	AUGUSTUS	transcript	9284067	9285587	.	-	.	transcript_id "Ledus.S2G120700.t1"; gene_id "Ledus.S2G120700"
Ledus.S2	AUGUSTUS	stop_codon	9284064	9284066	.	-	0	transcript_id "Ledus.S2G120700.t1"; gene_id "Ledus.S2G120700"
Ledus.S2	AUGUSTUS	CDS	9284067	9285587	0.81	-	0	transcript_id "Ledus.S2G120700.t1"; gene_id "Ledus.S2G120700"
Ledus.S2	AUGUSTUS	exon	9284067	9285587	.	-	.	transcript_id "Ledus.S2G120700.t1"; gene_id "Ledus.S2G120700"
Ledus.S2	AUGUSTUS	start_codon	9285585	9285587	.	-	0	transcript_id "Ledus.S2G120700.t1"; gene_id "Ledus.S2G120700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10783.t1 is derived from g11815.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17661650	17669043	.	+	.	Ledus.S3G226000
Ledus.S3	AUGUSTUS	transcript	17661650	17669043	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	start_codon	17661650	17661652	.	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17661650	17661766	0.51	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17661650	17661766	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17661767	17662236	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17662237	17662403	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17662237	17662403	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17662404	17662549	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17662550	17662691	1	+	1	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17662550	17662691	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17662692	17662842	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17662843	17662975	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17662843	17662975	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17662976	17663172	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17663173	17663267	1	+	2	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17663173	17663267	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17663268	17663361	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17663362	17663535	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17663362	17663535	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17663536	17663618	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17663619	17663762	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17663619	17663762	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17663763	17663846	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17663847	17664128	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17663847	17664128	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17664129	17664324	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17664325	17664543	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17664325	17664543	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17664544	17664628	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17664629	17664757	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17664629	17664757	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17664758	17664868	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17664869	17665006	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17664869	17665006	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17665007	17665207	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17665208	17665324	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17665208	17665324	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17665325	17665501	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17665502	17665564	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17665502	17665564	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17665565	17665650	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17665651	17665773	0.99	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17665651	17665773	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17665774	17665877	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17665878	17666132	0.98	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17665878	17666132	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666133	17666218	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666219	17666267	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666219	17666267	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666268	17666355	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666356	17666369	0.99	+	2	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666356	17666369	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666370	17666507	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666508	17666574	0.99	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666508	17666574	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666575	17666675	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666676	17666788	0.99	+	2	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666676	17666788	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666789	17666885	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666886	17667023	0.98	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666886	17667023	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667024	17667141	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667142	17667267	0.87	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667142	17667267	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667268	17667377	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667378	17667431	0.91	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667378	17667431	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667432	17667542	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667543	17667611	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667543	17667611	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667612	17667774	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667775	17667831	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667775	17667831	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667832	17667949	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667950	17668006	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667950	17668006	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668007	17668106	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668107	17668172	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668107	17668172	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668173	17668272	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668273	17668353	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668273	17668353	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668354	17668449	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668450	17668530	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668450	17668530	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668531	17668650	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668651	17668698	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668651	17668698	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668699	17668778	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668779	17668838	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668779	17668838	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668839	17668929	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668930	17669043	1	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668930	17669043	.	+	.	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	stop_codon	17669044	17669046	.	+	0	transcript_id "Ledus.S3G226000.t1"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	transcript	17661650	17669043	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	start_codon	17661650	17661652	.	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17661650	17661766	0.49	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17661650	17661766	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17661767	17662236	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17662237	17662403	0.99	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17662237	17662403	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17662404	17662549	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17662550	17662691	1	+	1	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17662550	17662691	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17662692	17662842	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17662843	17662975	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17662843	17662975	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17662976	17663172	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17663173	17663267	1	+	2	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17663173	17663267	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17663268	17663361	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17663362	17663535	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17663362	17663535	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17663536	17663618	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17663619	17663762	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17663619	17663762	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17663763	17663846	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17663847	17664128	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17663847	17664128	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17664129	17664324	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17664325	17664543	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17664325	17664543	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17664544	17664628	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17664629	17664757	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17664629	17664757	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17664758	17664868	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17664869	17665006	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17664869	17665006	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17665007	17665207	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17665208	17665324	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17665208	17665324	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17665325	17665501	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17665502	17665564	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17665502	17665564	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17665565	17665650	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17665651	17665773	0.97	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17665651	17665773	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17665774	17665877	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17665878	17666132	0.97	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17665878	17666132	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666133	17666218	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666219	17666267	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666219	17666267	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666268	17666355	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666356	17666369	1	+	2	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666356	17666369	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666370	17666507	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666508	17666574	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666508	17666574	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666575	17666675	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666676	17666788	0.99	+	2	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666676	17666788	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666789	17666885	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666886	17667023	0.97	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666886	17667023	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667024	17667141	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667142	17667267	0.85	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667142	17667267	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667268	17667377	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667378	17667431	0.94	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667378	17667431	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667432	17667542	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667543	17667602	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667543	17667602	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667603	17667774	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667775	17667831	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667775	17667831	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667832	17667949	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667950	17668006	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667950	17668006	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668007	17668106	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668107	17668172	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668107	17668172	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668173	17668272	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668273	17668353	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668273	17668353	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668354	17668449	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668450	17668530	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668450	17668530	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668531	17668650	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668651	17668698	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668651	17668698	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668699	17668778	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668779	17668838	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668779	17668838	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668839	17668929	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668930	17669043	1	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668930	17669043	.	+	.	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	stop_codon	17669044	17669046	.	+	0	transcript_id "Ledus.S3G226000.t2"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	transcript	17661650	17669043	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	start_codon	17661650	17661652	.	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17661650	17661737	0.38	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17661650	17661737	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17661738	17662236	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17662237	17662242	0.62	+	2	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17662237	17662242	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17662243	17662354	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17662355	17662403	0.94	+	2	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17662355	17662403	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17662404	17662549	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17662550	17662691	1	+	1	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17662550	17662691	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17662692	17662842	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17662843	17662975	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17662843	17662975	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17662976	17663172	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17663173	17663267	1	+	2	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17663173	17663267	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17663268	17663361	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17663362	17663535	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17663362	17663535	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17663536	17663618	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17663619	17663762	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17663619	17663762	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17663763	17663846	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17663847	17664128	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17663847	17664128	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17664129	17664324	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17664325	17664543	0.99	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17664325	17664543	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17664544	17664628	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17664629	17664757	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17664629	17664757	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17664758	17664868	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17664869	17665006	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17664869	17665006	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17665007	17665207	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17665208	17665324	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17665208	17665324	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17665325	17665501	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17665502	17665564	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17665502	17665564	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17665565	17665650	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17665651	17665773	0.97	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17665651	17665773	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17665774	17665877	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17665878	17666132	0.99	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17665878	17666132	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666133	17666218	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666219	17666267	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666219	17666267	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666268	17666355	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666356	17666369	0.98	+	2	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666356	17666369	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666370	17666507	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666508	17666574	0.98	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666508	17666574	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666575	17666675	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666676	17666788	0.96	+	2	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666676	17666788	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17666789	17666885	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17666886	17667023	0.97	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17666886	17667023	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667024	17667141	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667142	17667267	0.77	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667142	17667267	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667268	17667377	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667378	17667431	0.92	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667378	17667431	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667432	17667542	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667543	17667611	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667543	17667611	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667612	17667774	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667775	17667831	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667775	17667831	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17667832	17667949	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17667950	17668006	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17667950	17668006	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668007	17668106	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668107	17668172	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668107	17668172	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668173	17668272	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668273	17668353	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668273	17668353	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668354	17668449	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668450	17668530	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668450	17668530	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668531	17668650	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668651	17668698	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668651	17668698	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668699	17668778	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668779	17668838	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668779	17668838	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	intron	17668839	17668929	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	CDS	17668930	17669043	1	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	exon	17668930	17669043	.	+	.	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
Ledus.S3	AUGUSTUS	stop_codon	17669044	17669046	.	+	0	transcript_id "Ledus.S3G226000.t3"; gene_id "Ledus.S3G226000"
# This transcript jg11303.t2 is derived from g4921.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11304.t1 is derived from g4922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3475044	3475850	.	-	.	Ledus.S4G046000
Ledus.S4	AUGUSTUS	transcript	3475044	3475850	.	-	.	transcript_id "Ledus.S4G046000.t1"; gene_id "Ledus.S4G046000"
Ledus.S4	AUGUSTUS	stop_codon	3475041	3475043	.	-	0	transcript_id "Ledus.S4G046000.t1"; gene_id "Ledus.S4G046000"
Ledus.S4	AUGUSTUS	CDS	3475044	3475850	1	-	0	transcript_id "Ledus.S4G046000.t1"; gene_id "Ledus.S4G046000"
Ledus.S4	AUGUSTUS	exon	3475044	3475850	.	-	.	transcript_id "Ledus.S4G046000.t1"; gene_id "Ledus.S4G046000"
Ledus.S4	AUGUSTUS	start_codon	3475848	3475850	.	-	0	transcript_id "Ledus.S4G046000.t1"; gene_id "Ledus.S4G046000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9806.t1 is derived from g10836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9959018	9961618	.	+	.	Ledus.S3G128300
Ledus.S3	AUGUSTUS	transcript	9959018	9961618	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	start_codon	9959018	9959020	.	+	0	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9959018	9959262	0.87	+	0	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9959018	9959262	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9959263	9959590	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9959591	9959648	1	+	1	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9959591	9959648	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9959649	9959852	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9959853	9959976	1	+	0	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9959853	9959976	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9959977	9960108	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9960109	9960291	1	+	2	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9960109	9960291	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9960292	9960400	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9960401	9960466	1	+	2	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9960401	9960466	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9960467	9960663	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9960664	9960773	1	+	2	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9960664	9960773	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9960774	9960849	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9960850	9960909	1	+	0	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9960850	9960909	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9960910	9961030	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9961031	9961132	1	+	0	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9961031	9961132	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9961133	9961216	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9961217	9961618	0.96	+	0	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9961217	9961618	.	+	.	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	stop_codon	9961619	9961621	.	+	0	transcript_id "Ledus.S3G128300.t1"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	transcript	9959018	9961618	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	start_codon	9959018	9959020	.	+	0	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9959018	9959262	0.78	+	0	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9959018	9959262	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9959263	9959590	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9959591	9959648	1	+	1	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9959591	9959648	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9959649	9959852	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9959853	9959976	1	+	0	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9959853	9959976	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9959977	9960108	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9960109	9960291	0.99	+	2	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9960109	9960291	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9960292	9960400	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9960401	9960523	0.99	+	2	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9960401	9960523	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9960524	9960663	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9960664	9960773	1	+	2	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9960664	9960773	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9960774	9960849	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9960850	9960909	1	+	0	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9960850	9960909	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9960910	9961030	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9961031	9961132	1	+	0	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9961031	9961132	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	intron	9961133	9961216	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	CDS	9961217	9961618	0.97	+	0	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	exon	9961217	9961618	.	+	.	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
Ledus.S3	AUGUSTUS	stop_codon	9961619	9961621	.	+	0	transcript_id "Ledus.S3G128300.t2"; gene_id "Ledus.S3G128300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg102.t1 is derived from g9515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	420697	422507	.	-	.	Ledus.C8G006200
Ledus.C8	AUGUSTUS	transcript	420697	422507	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	stop_codon	420694	420696	.	-	0	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	CDS	420697	420778	1	-	1	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	exon	420697	420778	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	intron	420779	420990	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	CDS	420991	421071	1	-	1	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	exon	420991	421071	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	intron	421072	421284	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	CDS	421285	421497	1	-	1	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	exon	421285	421497	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	intron	421498	421587	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	CDS	421588	421707	1	-	1	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	exon	421588	421707	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	intron	421708	421842	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	CDS	421843	421988	1	-	0	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	exon	421843	421988	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	intron	421989	422161	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	CDS	422162	422296	1	-	0	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	exon	422162	422296	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	intron	422297	422477	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	CDS	422478	422507	0.68	-	0	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	exon	422478	422507	.	-	.	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
Ledus.C8	AUGUSTUS	start_codon	422505	422507	.	-	0	transcript_id "Ledus.C8G006200.t1"; gene_id "Ledus.C8G006200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9578.t1 is derived from g10608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7912850	7913077	.	-	.	Ledus.S3G105500
Ledus.S3	AUGUSTUS	transcript	7912850	7913077	.	-	.	transcript_id "Ledus.S3G105500.t1"; gene_id "Ledus.S3G105500"
Ledus.S3	AUGUSTUS	stop_codon	7912847	7912849	.	-	0	transcript_id "Ledus.S3G105500.t1"; gene_id "Ledus.S3G105500"
Ledus.S3	AUGUSTUS	CDS	7912850	7913077	0.96	-	0	transcript_id "Ledus.S3G105500.t1"; gene_id "Ledus.S3G105500"
Ledus.S3	AUGUSTUS	exon	7912850	7913077	.	-	.	transcript_id "Ledus.S3G105500.t1"; gene_id "Ledus.S3G105500"
Ledus.S3	AUGUSTUS	start_codon	7913075	7913077	.	-	0	transcript_id "Ledus.S3G105500.t1"; gene_id "Ledus.S3G105500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10892.t1 is derived from g4510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	345499	346577	.	+	.	Ledus.S4G004800
Ledus.S4	AUGUSTUS	transcript	345499	346577	.	+	.	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	start_codon	345499	345501	.	+	0	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	CDS	345499	345600	0.99	+	0	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	exon	345499	345600	.	+	.	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	intron	345601	345682	.	+	.	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	CDS	345683	345775	0.93	+	0	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	exon	345683	345775	.	+	.	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	intron	345776	345866	.	+	.	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	CDS	345867	345882	0.99	+	0	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	exon	345867	345882	.	+	.	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	intron	345883	346032	.	+	.	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	CDS	346033	346104	0.99	+	2	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	exon	346033	346104	.	+	.	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	intron	346105	346244	.	+	.	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	CDS	346245	346339	0.99	+	2	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	exon	346245	346339	.	+	.	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	intron	346340	346478	.	+	.	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	CDS	346479	346577	0.98	+	0	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	exon	346479	346577	.	+	.	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
Ledus.S4	AUGUSTUS	stop_codon	346578	346580	.	+	0	transcript_id "Ledus.S4G004800.t1"; gene_id "Ledus.S4G004800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8373.t1 is derived from g13045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11278007	11278815	.	-	.	Ledus.S5G115100
Ledus.S5	AUGUSTUS	transcript	11278007	11278815	.	-	.	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	stop_codon	11278004	11278006	.	-	0	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	CDS	11278007	11278222	1	-	0	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	exon	11278007	11278222	.	-	.	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	intron	11278223	11278313	.	-	.	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	CDS	11278314	11278476	1	-	1	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	exon	11278314	11278476	.	-	.	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	intron	11278477	11278608	.	-	.	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	CDS	11278609	11278719	1	-	1	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	exon	11278609	11278719	.	-	.	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	intron	11278720	11278798	.	-	.	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	CDS	11278799	11278815	0.42	-	0	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	exon	11278799	11278815	.	-	.	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
Ledus.S5	AUGUSTUS	start_codon	11278813	11278815	.	-	0	transcript_id "Ledus.S5G115100.t1"; gene_id "Ledus.S5G115100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5320.t1 is derived from g2759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23288961	23290619	.	+	.	Ledus.S1G274100
Ledus.S1	AUGUSTUS	transcript	23288961	23290619	.	+	.	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	start_codon	23288961	23288963	.	+	0	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	CDS	23288961	23289249	0.93	+	0	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	exon	23288961	23289249	.	+	.	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	intron	23289250	23289382	.	+	.	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	CDS	23289383	23289510	1	+	2	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	exon	23289383	23289510	.	+	.	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	intron	23289511	23289601	.	+	.	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	CDS	23289602	23289835	1	+	0	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	exon	23289602	23289835	.	+	.	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	intron	23289836	23289964	.	+	.	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	CDS	23289965	23290211	1	+	0	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	exon	23289965	23290211	.	+	.	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	intron	23290212	23290398	.	+	.	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	CDS	23290399	23290619	1	+	2	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	exon	23290399	23290619	.	+	.	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
Ledus.S1	AUGUSTUS	stop_codon	23290620	23290622	.	+	0	transcript_id "Ledus.S1G274100.t1"; gene_id "Ledus.S1G274100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12477.t1 is derived from g6098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12231960	12232178	.	+	.	Ledus.S4G163300
Ledus.S4	AUGUSTUS	transcript	12231960	12232178	.	+	.	transcript_id "Ledus.S4G163300.t1"; gene_id "Ledus.S4G163300"
Ledus.S4	AUGUSTUS	start_codon	12231960	12231962	.	+	0	transcript_id "Ledus.S4G163300.t1"; gene_id "Ledus.S4G163300"
Ledus.S4	AUGUSTUS	CDS	12231960	12232178	0.79	+	0	transcript_id "Ledus.S4G163300.t1"; gene_id "Ledus.S4G163300"
Ledus.S4	AUGUSTUS	exon	12231960	12232178	.	+	.	transcript_id "Ledus.S4G163300.t1"; gene_id "Ledus.S4G163300"
Ledus.S4	AUGUSTUS	stop_codon	12232179	12232181	.	+	0	transcript_id "Ledus.S4G163300.t1"; gene_id "Ledus.S4G163300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6365.t1 is derived from g3808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30789695	30792085	.	+	.	Ledus.S1G378600
Ledus.S1	AUGUSTUS	transcript	30789695	30792085	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	start_codon	30789695	30789697	.	+	0	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	CDS	30789695	30790037	0.82	+	0	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	exon	30789695	30790037	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	intron	30790038	30790123	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	CDS	30790124	30790388	0.46	+	2	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	exon	30790124	30790388	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	intron	30790389	30790596	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	CDS	30790597	30791158	1	+	1	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	exon	30790597	30791158	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	intron	30791159	30791246	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	CDS	30791247	30791335	1	+	0	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	exon	30791247	30791335	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	intron	30791336	30791426	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	CDS	30791427	30791544	1	+	1	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	exon	30791427	30791544	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	intron	30791545	30791630	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	CDS	30791631	30791819	1	+	0	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	exon	30791631	30791819	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	intron	30791820	30791920	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	CDS	30791921	30792085	1	+	0	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	exon	30791921	30792085	.	+	.	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
Ledus.S1	AUGUSTUS	stop_codon	30792086	30792088	.	+	0	transcript_id "Ledus.S1G378600.t1"; gene_id "Ledus.S1G378600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4250.t1 is derived from g1686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15765299	15768412	.	+	.	Ledus.S1G167100
Ledus.S1	AUGUSTUS	transcript	15765299	15768412	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	start_codon	15765299	15765301	.	+	0	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	CDS	15765299	15765544	0.58	+	0	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	exon	15765299	15765544	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	intron	15765545	15765653	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	CDS	15765654	15766091	0.98	+	0	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	exon	15765654	15766091	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	intron	15766092	15766312	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	CDS	15766313	15766507	1	+	0	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	exon	15766313	15766507	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	intron	15766508	15766654	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	CDS	15766655	15766815	0.99	+	0	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	exon	15766655	15766815	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	intron	15766816	15766924	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	CDS	15766925	15767739	0.99	+	1	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	exon	15766925	15767739	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	intron	15767740	15768010	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	CDS	15768011	15768038	0.99	+	2	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	exon	15768011	15768038	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	intron	15768039	15768246	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	CDS	15768247	15768412	0.99	+	1	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	exon	15768247	15768412	.	+	.	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
Ledus.S1	AUGUSTUS	stop_codon	15768413	15768415	.	+	0	transcript_id "Ledus.S1G167100.t1"; gene_id "Ledus.S1G167100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2650.t1 is derived from g83.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1182885	1183967	.	-	.	Ledus.S1G007100
Ledus.S1	AUGUSTUS	transcript	1182885	1183967	.	-	.	transcript_id "Ledus.S1G007100.t1"; gene_id "Ledus.S1G007100"
Ledus.S1	AUGUSTUS	stop_codon	1182882	1182884	.	-	0	transcript_id "Ledus.S1G007100.t1"; gene_id "Ledus.S1G007100"
Ledus.S1	AUGUSTUS	CDS	1182885	1183967	0.32	-	0	transcript_id "Ledus.S1G007100.t1"; gene_id "Ledus.S1G007100"
Ledus.S1	AUGUSTUS	exon	1182885	1183967	.	-	.	transcript_id "Ledus.S1G007100.t1"; gene_id "Ledus.S1G007100"
Ledus.S1	AUGUSTUS	start_codon	1183965	1183967	.	-	0	transcript_id "Ledus.S1G007100.t1"; gene_id "Ledus.S1G007100"
# This transcript jg11379.t2 is derived from g4997.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11380.t1 is derived from g4998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3888640	3889686	.	+	.	Ledus.S4G053600
Ledus.S4	AUGUSTUS	transcript	3888640	3889686	.	+	.	transcript_id "Ledus.S4G053600.t1"; gene_id "Ledus.S4G053600"
Ledus.S4	AUGUSTUS	start_codon	3888640	3888642	.	+	0	transcript_id "Ledus.S4G053600.t1"; gene_id "Ledus.S4G053600"
Ledus.S4	AUGUSTUS	CDS	3888640	3889686	0.66	+	0	transcript_id "Ledus.S4G053600.t1"; gene_id "Ledus.S4G053600"
Ledus.S4	AUGUSTUS	exon	3888640	3889686	.	+	.	transcript_id "Ledus.S4G053600.t1"; gene_id "Ledus.S4G053600"
Ledus.S4	AUGUSTUS	stop_codon	3889687	3889689	.	+	0	transcript_id "Ledus.S4G053600.t1"; gene_id "Ledus.S4G053600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg884.t1 is derived from g7745.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5961272	5964082	.	-	.	Ledus.S2G076600
Ledus.S2	AUGUSTUS	transcript	5961272	5964082	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	stop_codon	5961269	5961271	.	-	0	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5961272	5961361	0.99	-	0	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5961272	5961361	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5961362	5961447	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5961448	5961521	1	-	2	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5961448	5961521	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5961522	5961604	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5961605	5961610	1	-	2	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5961605	5961610	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5961611	5961721	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5961722	5961757	0.78	-	2	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5961722	5961757	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5961758	5961835	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5961836	5961897	0.91	-	1	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5961836	5961897	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5961898	5962008	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5962009	5962070	0.78	-	0	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5962009	5962070	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5962071	5962162	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5962163	5962294	1	-	0	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5962163	5962294	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5962295	5962389	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5962390	5962607	1	-	2	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5962390	5962607	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5962608	5962732	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5962733	5962948	0.42	-	2	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5962733	5962948	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5962949	5963080	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5963081	5963171	0.7	-	0	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5963081	5963171	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5963172	5963294	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5963295	5963439	1	-	1	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5963295	5963439	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5963440	5963563	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5963564	5963922	0.88	-	0	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5963564	5963922	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5963923	5964055	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5964056	5964082	0.57	-	0	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5964056	5964082	.	-	.	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	start_codon	5964080	5964082	.	-	0	transcript_id "Ledus.S2G076600.t1"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	transcript	5961272	5964082	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	stop_codon	5961269	5961271	.	-	0	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5961272	5961361	0.97	-	0	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5961272	5961361	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5961362	5961447	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5961448	5961521	1	-	2	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5961448	5961521	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5961522	5961604	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5961605	5961610	1	-	2	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5961605	5961610	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5961611	5961721	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5961722	5961757	0.82	-	2	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5961722	5961757	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5961758	5961835	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5961836	5961897	0.91	-	1	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5961836	5961897	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5961898	5962008	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5962009	5962070	0.79	-	0	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5962009	5962070	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5962071	5962162	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5962163	5962294	1	-	0	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5962163	5962294	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5962295	5962389	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5962390	5962607	1	-	2	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5962390	5962607	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5962608	5962732	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5962733	5962948	0.4	-	2	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5962733	5962948	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5962949	5963080	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5963081	5963171	0.66	-	0	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5963081	5963171	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5963172	5963294	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5963295	5963439	1	-	1	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5963295	5963439	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5963440	5963563	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5963564	5963919	0.9	-	0	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5963564	5963919	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	intron	5963920	5964055	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	CDS	5964056	5964082	0.49	-	0	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	exon	5964056	5964082	.	-	.	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
Ledus.S2	AUGUSTUS	start_codon	5964080	5964082	.	-	0	transcript_id "Ledus.S2G076600.t2"; gene_id "Ledus.S2G076600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10534.t1 is derived from g11564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15997964	16000633	.	-	.	Ledus.S3G201100
Ledus.S3	AUGUSTUS	transcript	15997964	16000633	.	-	.	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	stop_codon	15997961	15997963	.	-	0	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	CDS	15997964	15999095	1	-	1	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	exon	15997964	15999095	.	-	.	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	intron	15999096	15999168	.	-	.	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	CDS	15999169	15999417	1	-	1	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	exon	15999169	15999417	.	-	.	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	intron	15999418	15999545	.	-	.	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	CDS	15999546	15999786	1	-	2	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	exon	15999546	15999786	.	-	.	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	intron	15999787	15999874	.	-	.	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	CDS	15999875	16000155	1	-	1	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	exon	15999875	16000155	.	-	.	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	intron	16000156	16000236	.	-	.	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	CDS	16000237	16000553	1	-	0	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	exon	16000237	16000553	.	-	.	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	intron	16000554	16000624	.	-	.	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	CDS	16000625	16000633	1	-	0	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	exon	16000625	16000633	.	-	.	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
Ledus.S3	AUGUSTUS	start_codon	16000631	16000633	.	-	0	transcript_id "Ledus.S3G201100.t1"; gene_id "Ledus.S3G201100"
# This transcript jg11508.t2 is derived from g5126.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11509.t1 is derived from g5127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4995721	4996026	.	-	.	Ledus.S4G066500
Ledus.S4	AUGUSTUS	transcript	4995721	4996026	.	-	.	transcript_id "Ledus.S4G066500.t1"; gene_id "Ledus.S4G066500"
Ledus.S4	AUGUSTUS	stop_codon	4995718	4995720	.	-	0	transcript_id "Ledus.S4G066500.t1"; gene_id "Ledus.S4G066500"
Ledus.S4	AUGUSTUS	CDS	4995721	4996026	0.82	-	0	transcript_id "Ledus.S4G066500.t1"; gene_id "Ledus.S4G066500"
Ledus.S4	AUGUSTUS	exon	4995721	4996026	.	-	.	transcript_id "Ledus.S4G066500.t1"; gene_id "Ledus.S4G066500"
Ledus.S4	AUGUSTUS	start_codon	4996024	4996026	.	-	0	transcript_id "Ledus.S4G066500.t1"; gene_id "Ledus.S4G066500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10504.t1 is derived from g11534.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15646544	15649763	.	+	.	Ledus.S3G198100
Ledus.S3	AUGUSTUS	transcript	15646544	15649763	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	start_codon	15646544	15646546	.	+	0	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	CDS	15646544	15646685	0.8	+	0	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	exon	15646544	15646685	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	intron	15646686	15646797	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	CDS	15646798	15646915	1	+	2	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	exon	15646798	15646915	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	intron	15646916	15647057	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	CDS	15647058	15647224	1	+	1	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	exon	15647058	15647224	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	intron	15647225	15647327	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	CDS	15647328	15647395	0.97	+	2	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	exon	15647328	15647395	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	intron	15647396	15647517	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	CDS	15647518	15647741	0.94	+	0	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	exon	15647518	15647741	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	intron	15647742	15647890	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	CDS	15647891	15647942	1	+	1	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	exon	15647891	15647942	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	intron	15647943	15648038	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	CDS	15648039	15648582	0.37	+	0	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	exon	15648039	15648582	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	intron	15648583	15648709	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	CDS	15648710	15648782	0.99	+	2	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	exon	15648710	15648782	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	intron	15648783	15648882	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	CDS	15648883	15649102	0.88	+	1	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	exon	15648883	15649102	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	intron	15649103	15649203	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	CDS	15649204	15649308	1	+	0	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	exon	15649204	15649308	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	intron	15649309	15649389	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	CDS	15649390	15649485	1	+	0	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	exon	15649390	15649485	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	intron	15649486	15649571	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	CDS	15649572	15649763	0.99	+	0	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	exon	15649572	15649763	.	+	.	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
Ledus.S3	AUGUSTUS	stop_codon	15649764	15649766	.	+	0	transcript_id "Ledus.S3G198100.t1"; gene_id "Ledus.S3G198100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg863.t1 is derived from g7724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5780730	5781155	.	+	.	Ledus.S2G074500
Ledus.S2	AUGUSTUS	transcript	5780730	5781155	.	+	.	transcript_id "Ledus.S2G074500.t1"; gene_id "Ledus.S2G074500"
Ledus.S2	AUGUSTUS	start_codon	5780730	5780732	.	+	0	transcript_id "Ledus.S2G074500.t1"; gene_id "Ledus.S2G074500"
Ledus.S2	AUGUSTUS	CDS	5780730	5781155	0.68	+	0	transcript_id "Ledus.S2G074500.t1"; gene_id "Ledus.S2G074500"
Ledus.S2	AUGUSTUS	exon	5780730	5781155	.	+	.	transcript_id "Ledus.S2G074500.t1"; gene_id "Ledus.S2G074500"
Ledus.S2	AUGUSTUS	stop_codon	5781156	5781158	.	+	0	transcript_id "Ledus.S2G074500.t1"; gene_id "Ledus.S2G074500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9957.t1 is derived from g10987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11464605	11464958	.	-	.	Ledus.S3G143400
Ledus.S3	AUGUSTUS	transcript	11464605	11464925	.	-	.	transcript_id "Ledus.S3G143400.t1"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	stop_codon	11464602	11464604	.	-	0	transcript_id "Ledus.S3G143400.t1"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	CDS	11464605	11464925	0.77	-	0	transcript_id "Ledus.S3G143400.t1"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	exon	11464605	11464925	.	-	.	transcript_id "Ledus.S3G143400.t1"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	start_codon	11464923	11464925	.	-	0	transcript_id "Ledus.S3G143400.t1"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	transcript	11464605	11464901	.	-	.	transcript_id "Ledus.S3G143400.t2"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	stop_codon	11464602	11464604	.	-	0	transcript_id "Ledus.S3G143400.t2"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	CDS	11464605	11464901	0.76	-	0	transcript_id "Ledus.S3G143400.t2"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	exon	11464605	11464901	.	-	.	transcript_id "Ledus.S3G143400.t2"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	start_codon	11464899	11464901	.	-	0	transcript_id "Ledus.S3G143400.t2"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	transcript	11464605	11464958	.	-	.	transcript_id "Ledus.S3G143400.t3"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	stop_codon	11464602	11464604	.	-	0	transcript_id "Ledus.S3G143400.t3"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	CDS	11464605	11464958	0.61	-	0	transcript_id "Ledus.S3G143400.t3"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	exon	11464605	11464958	.	-	.	transcript_id "Ledus.S3G143400.t3"; gene_id "Ledus.S3G143400"
Ledus.S3	AUGUSTUS	start_codon	11464956	11464958	.	-	0	transcript_id "Ledus.S3G143400.t3"; gene_id "Ledus.S3G143400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8829.t1 is derived from g9859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2194203	2194773	.	+	.	Ledus.S3G030600
Ledus.S3	AUGUSTUS	transcript	2194203	2194773	.	+	.	transcript_id "Ledus.S3G030600.t1"; gene_id "Ledus.S3G030600"
Ledus.S3	AUGUSTUS	start_codon	2194203	2194205	.	+	0	transcript_id "Ledus.S3G030600.t1"; gene_id "Ledus.S3G030600"
Ledus.S3	AUGUSTUS	CDS	2194203	2194341	0.69	+	0	transcript_id "Ledus.S3G030600.t1"; gene_id "Ledus.S3G030600"
Ledus.S3	AUGUSTUS	exon	2194203	2194341	.	+	.	transcript_id "Ledus.S3G030600.t1"; gene_id "Ledus.S3G030600"
Ledus.S3	AUGUSTUS	intron	2194342	2194451	.	+	.	transcript_id "Ledus.S3G030600.t1"; gene_id "Ledus.S3G030600"
Ledus.S3	AUGUSTUS	CDS	2194452	2194564	0.96	+	2	transcript_id "Ledus.S3G030600.t1"; gene_id "Ledus.S3G030600"
Ledus.S3	AUGUSTUS	exon	2194452	2194564	.	+	.	transcript_id "Ledus.S3G030600.t1"; gene_id "Ledus.S3G030600"
Ledus.S3	AUGUSTUS	intron	2194565	2194641	.	+	.	transcript_id "Ledus.S3G030600.t1"; gene_id "Ledus.S3G030600"
Ledus.S3	AUGUSTUS	CDS	2194642	2194773	1	+	0	transcript_id "Ledus.S3G030600.t1"; gene_id "Ledus.S3G030600"
Ledus.S3	AUGUSTUS	exon	2194642	2194773	.	+	.	transcript_id "Ledus.S3G030600.t1"; gene_id "Ledus.S3G030600"
Ledus.S3	AUGUSTUS	stop_codon	2194774	2194776	.	+	0	transcript_id "Ledus.S3G030600.t1"; gene_id "Ledus.S3G030600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7143.t1 is derived from g6674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1739503	1740741	.	-	.	Ledus.C7G020400
Ledus.C7	AUGUSTUS	transcript	1739503	1740741	.	-	.	transcript_id "Ledus.C7G020400.t1"; gene_id "Ledus.C7G020400"
Ledus.C7	AUGUSTUS	stop_codon	1739500	1739502	.	-	0	transcript_id "Ledus.C7G020400.t1"; gene_id "Ledus.C7G020400"
Ledus.C7	AUGUSTUS	CDS	1739503	1740741	0.65	-	0	transcript_id "Ledus.C7G020400.t1"; gene_id "Ledus.C7G020400"
Ledus.C7	AUGUSTUS	exon	1739503	1740741	.	-	.	transcript_id "Ledus.C7G020400.t1"; gene_id "Ledus.C7G020400"
Ledus.C7	AUGUSTUS	start_codon	1740739	1740741	.	-	0	transcript_id "Ledus.C7G020400.t1"; gene_id "Ledus.C7G020400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4190.t1 is derived from g1626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15261597	15263276	.	-	.	Ledus.S1G161100
Ledus.S1	AUGUSTUS	transcript	15261597	15263276	.	-	.	transcript_id "Ledus.S1G161100.t1"; gene_id "Ledus.S1G161100"
Ledus.S1	AUGUSTUS	stop_codon	15261594	15261596	.	-	0	transcript_id "Ledus.S1G161100.t1"; gene_id "Ledus.S1G161100"
Ledus.S1	AUGUSTUS	CDS	15261597	15263276	0.99	-	0	transcript_id "Ledus.S1G161100.t1"; gene_id "Ledus.S1G161100"
Ledus.S1	AUGUSTUS	exon	15261597	15263276	.	-	.	transcript_id "Ledus.S1G161100.t1"; gene_id "Ledus.S1G161100"
Ledus.S1	AUGUSTUS	start_codon	15263274	15263276	.	-	0	transcript_id "Ledus.S1G161100.t1"; gene_id "Ledus.S1G161100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3506.t1 is derived from g941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8906390	8909605	.	+	.	Ledus.S1G092700
Ledus.S1	AUGUSTUS	transcript	8906390	8909605	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	start_codon	8906390	8906392	.	+	0	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8906390	8906641	0.85	+	0	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8906390	8906641	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8906642	8906731	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8906732	8906867	1	+	0	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8906732	8906867	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8906868	8907059	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8907060	8907204	0.88	+	2	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8907060	8907204	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8907205	8907308	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8907309	8907478	0.98	+	1	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8907309	8907478	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8907479	8907572	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8907573	8907649	1	+	2	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8907573	8907649	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8907650	8907741	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8907742	8907955	1	+	0	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8907742	8907955	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8907956	8908073	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8908074	8908245	0.9	+	2	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8908074	8908245	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8908246	8908333	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8908334	8908433	1	+	1	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8908334	8908433	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8908434	8908516	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8908517	8908614	1	+	0	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8908517	8908614	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8908615	8908699	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8908700	8908823	1	+	1	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8908700	8908823	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8908824	8908906	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8908907	8909078	1	+	0	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8908907	8909078	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8909079	8909170	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8909171	8909275	1	+	2	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8909171	8909275	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8909276	8909351	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8909352	8909436	1	+	2	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8909352	8909436	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	intron	8909437	8909520	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	CDS	8909521	8909605	1	+	1	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	exon	8909521	8909605	.	+	.	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
Ledus.S1	AUGUSTUS	stop_codon	8909606	8909608	.	+	0	transcript_id "Ledus.S1G092700.t1"; gene_id "Ledus.S1G092700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4388.t1 is derived from g1824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16759254	16760531	.	+	.	Ledus.S1G180900
Ledus.S1	AUGUSTUS	transcript	16759254	16760531	.	+	.	transcript_id "Ledus.S1G180900.t1"; gene_id "Ledus.S1G180900"
Ledus.S1	AUGUSTUS	start_codon	16759254	16759256	.	+	0	transcript_id "Ledus.S1G180900.t1"; gene_id "Ledus.S1G180900"
Ledus.S1	AUGUSTUS	CDS	16759254	16759497	0.51	+	0	transcript_id "Ledus.S1G180900.t1"; gene_id "Ledus.S1G180900"
Ledus.S1	AUGUSTUS	exon	16759254	16759497	.	+	.	transcript_id "Ledus.S1G180900.t1"; gene_id "Ledus.S1G180900"
Ledus.S1	AUGUSTUS	intron	16759498	16759575	.	+	.	transcript_id "Ledus.S1G180900.t1"; gene_id "Ledus.S1G180900"
Ledus.S1	AUGUSTUS	CDS	16759576	16760531	1	+	2	transcript_id "Ledus.S1G180900.t1"; gene_id "Ledus.S1G180900"
Ledus.S1	AUGUSTUS	exon	16759576	16760531	.	+	.	transcript_id "Ledus.S1G180900.t1"; gene_id "Ledus.S1G180900"
Ledus.S1	AUGUSTUS	stop_codon	16760532	16760534	.	+	0	transcript_id "Ledus.S1G180900.t1"; gene_id "Ledus.S1G180900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1081.t1 is derived from g7942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7314976	7317529	.	+	.	Ledus.S2G096300
Ledus.S2	AUGUSTUS	transcript	7314976	7317529	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	start_codon	7314976	7314978	.	+	0	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	CDS	7314976	7315010	0.65	+	0	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	exon	7314976	7315010	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	intron	7315011	7315164	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	CDS	7315165	7315309	1	+	1	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	exon	7315165	7315309	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	intron	7315310	7315464	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	CDS	7315465	7315542	1	+	0	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	exon	7315465	7315542	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	intron	7315543	7315664	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	CDS	7315665	7315697	1	+	0	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	exon	7315665	7315697	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	intron	7315698	7315770	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	CDS	7315771	7315831	1	+	0	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	exon	7315771	7315831	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	intron	7315832	7316030	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	CDS	7316031	7316152	1	+	2	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	exon	7316031	7316152	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	intron	7316153	7316248	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	CDS	7316249	7316334	1	+	0	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	exon	7316249	7316334	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	intron	7316335	7316418	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	CDS	7316419	7316620	1	+	1	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	exon	7316419	7316620	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	intron	7316621	7316755	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	CDS	7316756	7316812	0.93	+	0	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	exon	7316756	7316812	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	intron	7316813	7316926	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	CDS	7316927	7317037	0.93	+	0	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	exon	7316927	7317037	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	intron	7317038	7317121	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	CDS	7317122	7317178	1	+	0	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	exon	7317122	7317178	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	intron	7317179	7317268	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	CDS	7317269	7317529	0.99	+	0	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	exon	7317269	7317529	.	+	.	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
Ledus.S2	AUGUSTUS	stop_codon	7317530	7317532	.	+	0	transcript_id "Ledus.S2G096300.t1"; gene_id "Ledus.S2G096300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4139.t1 is derived from g1575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14914393	14916998	.	-	.	Ledus.S1G156000
Ledus.S1	AUGUSTUS	transcript	14914393	14916998	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	stop_codon	14914390	14914392	.	-	0	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	CDS	14914393	14914464	1	-	0	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	exon	14914393	14914464	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	intron	14914465	14914549	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	CDS	14914550	14914645	0.64	-	0	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	exon	14914550	14914645	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	intron	14914646	14914838	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	CDS	14914839	14915033	0.49	-	0	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	exon	14914839	14915033	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	intron	14915034	14915121	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	CDS	14915122	14915316	1	-	0	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	exon	14915122	14915316	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	intron	14915317	14915409	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	CDS	14915410	14915595	1	-	0	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	exon	14915410	14915595	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	intron	14915596	14915667	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	CDS	14915668	14915760	0.99	-	0	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	exon	14915668	14915760	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	intron	14915761	14915847	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	CDS	14915848	14915943	0.9	-	0	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	exon	14915848	14915943	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	intron	14915944	14916025	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	CDS	14916026	14916363	0.6	-	2	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	exon	14916026	14916363	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	intron	14916364	14916447	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	CDS	14916448	14916637	0.69	-	0	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	exon	14916448	14916637	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	intron	14916638	14916721	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	CDS	14916722	14916778	0.89	-	0	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	exon	14916722	14916778	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	intron	14916779	14916872	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	CDS	14916873	14916998	0.49	-	0	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	exon	14916873	14916998	.	-	.	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
Ledus.S1	AUGUSTUS	start_codon	14916996	14916998	.	-	0	transcript_id "Ledus.S1G156000.t1"; gene_id "Ledus.S1G156000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5550.t1 is derived from g2989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25073884	25077063	.	-	.	Ledus.S1G297100
Ledus.S1	AUGUSTUS	transcript	25073884	25077063	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	stop_codon	25073881	25073883	.	-	0	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	CDS	25073884	25074009	1	-	0	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	exon	25073884	25074009	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	intron	25074010	25074100	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	CDS	25074101	25074229	1	-	0	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	exon	25074101	25074229	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	intron	25074230	25074384	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	CDS	25074385	25074738	1	-	0	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	exon	25074385	25074738	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	intron	25074739	25074827	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	CDS	25074828	25075074	0.97	-	1	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	exon	25074828	25075074	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	intron	25075075	25075181	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	CDS	25075182	25075258	0.97	-	0	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	exon	25075182	25075258	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	intron	25075259	25075375	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	CDS	25075376	25075450	1	-	0	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	exon	25075376	25075450	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	intron	25075451	25075656	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	CDS	25075657	25075758	1	-	0	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	exon	25075657	25075758	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	intron	25075759	25075852	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	CDS	25075853	25075971	1	-	2	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	exon	25075853	25075971	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	intron	25075972	25076061	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	CDS	25076062	25076185	1	-	0	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	exon	25076062	25076185	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	intron	25076186	25076363	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	CDS	25076364	25076414	1	-	0	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	exon	25076364	25076414	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	intron	25076415	25076520	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	CDS	25076521	25076619	0.94	-	0	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	exon	25076521	25076619	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	intron	25076620	25076958	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	CDS	25076959	25077063	0.63	-	0	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	exon	25076959	25077063	.	-	.	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
Ledus.S1	AUGUSTUS	start_codon	25077061	25077063	.	-	0	transcript_id "Ledus.S1G297100.t1"; gene_id "Ledus.S1G297100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4377.t1 is derived from g1813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16700370	16701848	.	+	.	Ledus.S1G179800
Ledus.S1	AUGUSTUS	transcript	16700370	16701848	.	+	.	transcript_id "Ledus.S1G179800.t1"; gene_id "Ledus.S1G179800"
Ledus.S1	AUGUSTUS	start_codon	16700370	16700372	.	+	0	transcript_id "Ledus.S1G179800.t1"; gene_id "Ledus.S1G179800"
Ledus.S1	AUGUSTUS	CDS	16700370	16701303	0.38	+	0	transcript_id "Ledus.S1G179800.t1"; gene_id "Ledus.S1G179800"
Ledus.S1	AUGUSTUS	exon	16700370	16701303	.	+	.	transcript_id "Ledus.S1G179800.t1"; gene_id "Ledus.S1G179800"
Ledus.S1	AUGUSTUS	intron	16701304	16701403	.	+	.	transcript_id "Ledus.S1G179800.t1"; gene_id "Ledus.S1G179800"
Ledus.S1	AUGUSTUS	CDS	16701404	16701483	1	+	2	transcript_id "Ledus.S1G179800.t1"; gene_id "Ledus.S1G179800"
Ledus.S1	AUGUSTUS	exon	16701404	16701483	.	+	.	transcript_id "Ledus.S1G179800.t1"; gene_id "Ledus.S1G179800"
Ledus.S1	AUGUSTUS	intron	16701484	16701641	.	+	.	transcript_id "Ledus.S1G179800.t1"; gene_id "Ledus.S1G179800"
Ledus.S1	AUGUSTUS	CDS	16701642	16701848	1	+	0	transcript_id "Ledus.S1G179800.t1"; gene_id "Ledus.S1G179800"
Ledus.S1	AUGUSTUS	exon	16701642	16701848	.	+	.	transcript_id "Ledus.S1G179800.t1"; gene_id "Ledus.S1G179800"
Ledus.S1	AUGUSTUS	stop_codon	16701849	16701851	.	+	0	transcript_id "Ledus.S1G179800.t1"; gene_id "Ledus.S1G179800"
# This transcript jg8788.t2 is derived from g9818.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8789.t1 is derived from g9819.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1981590	1982907	.	-	.	Ledus.S3G026600
Ledus.S3	AUGUSTUS	transcript	1981590	1982907	.	-	.	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	stop_codon	1981587	1981589	.	-	0	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	CDS	1981590	1981832	0.72	-	0	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	exon	1981590	1981832	.	-	.	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	intron	1981833	1981916	.	-	.	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	CDS	1981917	1982456	1	-	0	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	exon	1981917	1982456	.	-	.	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	intron	1982457	1982555	.	-	.	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	CDS	1982556	1982615	1	-	0	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	exon	1982556	1982615	.	-	.	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	intron	1982616	1982724	.	-	.	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	CDS	1982725	1982907	0.5	-	0	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	exon	1982725	1982907	.	-	.	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
Ledus.S3	AUGUSTUS	start_codon	1982905	1982907	.	-	0	transcript_id "Ledus.S3G026600.t1"; gene_id "Ledus.S3G026600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9193.t1 is derived from g10223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5307438	5308528	.	+	.	Ledus.S3G067000
Ledus.S3	AUGUSTUS	transcript	5307438	5308528	.	+	.	transcript_id "Ledus.S3G067000.t1"; gene_id "Ledus.S3G067000"
Ledus.S3	AUGUSTUS	start_codon	5307438	5307440	.	+	0	transcript_id "Ledus.S3G067000.t1"; gene_id "Ledus.S3G067000"
Ledus.S3	AUGUSTUS	CDS	5307438	5307449	1	+	0	transcript_id "Ledus.S3G067000.t1"; gene_id "Ledus.S3G067000"
Ledus.S3	AUGUSTUS	exon	5307438	5307449	.	+	.	transcript_id "Ledus.S3G067000.t1"; gene_id "Ledus.S3G067000"
Ledus.S3	AUGUSTUS	intron	5307450	5307541	.	+	.	transcript_id "Ledus.S3G067000.t1"; gene_id "Ledus.S3G067000"
Ledus.S3	AUGUSTUS	CDS	5307542	5308528	0.95	+	0	transcript_id "Ledus.S3G067000.t1"; gene_id "Ledus.S3G067000"
Ledus.S3	AUGUSTUS	exon	5307542	5308528	.	+	.	transcript_id "Ledus.S3G067000.t1"; gene_id "Ledus.S3G067000"
Ledus.S3	AUGUSTUS	stop_codon	5308529	5308531	.	+	0	transcript_id "Ledus.S3G067000.t1"; gene_id "Ledus.S3G067000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11838.t1 is derived from g5457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7209751	7212561	.	+	.	Ledus.S4G099400
Ledus.S4	AUGUSTUS	transcript	7209751	7212561	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	start_codon	7209751	7209753	.	+	0	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7209751	7209965	0.64	+	0	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7209751	7209965	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	intron	7209966	7210278	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7210279	7210370	1	+	1	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7210279	7210370	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	intron	7210371	7210556	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7210557	7210570	1	+	2	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7210557	7210570	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	intron	7210571	7210692	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7210693	7210912	0.85	+	0	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7210693	7210912	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	intron	7210913	7211030	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7211031	7211126	0.99	+	2	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7211031	7211126	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	intron	7211127	7211213	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7211214	7211329	1	+	2	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7211214	7211329	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	intron	7211330	7211414	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7211415	7211495	1	+	0	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7211415	7211495	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	intron	7211496	7211593	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7211594	7211717	1	+	0	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7211594	7211717	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	intron	7211718	7211801	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7211802	7211851	1	+	2	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7211802	7211851	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	intron	7211852	7211939	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7211940	7212024	1	+	0	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7211940	7212024	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	intron	7212025	7212127	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7212128	7212172	0.95	+	2	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7212128	7212172	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	intron	7212173	7212260	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7212261	7212358	1	+	2	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7212261	7212358	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	intron	7212359	7212447	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	CDS	7212448	7212561	1	+	0	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	exon	7212448	7212561	.	+	.	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
Ledus.S4	AUGUSTUS	stop_codon	7212562	7212564	.	+	0	transcript_id "Ledus.S4G099400.t1"; gene_id "Ledus.S4G099400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10198.t1 is derived from g11228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13524039	13524445	.	+	.	Ledus.S3G167500
Ledus.S3	AUGUSTUS	transcript	13524039	13524445	.	+	.	transcript_id "Ledus.S3G167500.t1"; gene_id "Ledus.S3G167500"
Ledus.S3	AUGUSTUS	start_codon	13524039	13524041	.	+	0	transcript_id "Ledus.S3G167500.t1"; gene_id "Ledus.S3G167500"
Ledus.S3	AUGUSTUS	CDS	13524039	13524189	0.74	+	0	transcript_id "Ledus.S3G167500.t1"; gene_id "Ledus.S3G167500"
Ledus.S3	AUGUSTUS	exon	13524039	13524189	.	+	.	transcript_id "Ledus.S3G167500.t1"; gene_id "Ledus.S3G167500"
Ledus.S3	AUGUSTUS	intron	13524190	13524341	.	+	.	transcript_id "Ledus.S3G167500.t1"; gene_id "Ledus.S3G167500"
Ledus.S3	AUGUSTUS	CDS	13524342	13524445	0.87	+	2	transcript_id "Ledus.S3G167500.t1"; gene_id "Ledus.S3G167500"
Ledus.S3	AUGUSTUS	exon	13524342	13524445	.	+	.	transcript_id "Ledus.S3G167500.t1"; gene_id "Ledus.S3G167500"
Ledus.S3	AUGUSTUS	stop_codon	13524446	13524448	.	+	0	transcript_id "Ledus.S3G167500.t1"; gene_id "Ledus.S3G167500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4930.t1 is derived from g2368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20735898	20738493	.	-	.	Ledus.S1G235100
Ledus.S1	AUGUSTUS	transcript	20735898	20738493	.	-	.	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	stop_codon	20735895	20735897	.	-	0	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	CDS	20735898	20736974	1	-	0	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	exon	20735898	20736974	.	-	.	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	intron	20736975	20737069	.	-	.	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	CDS	20737070	20737774	1	-	0	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	exon	20737070	20737774	.	-	.	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	intron	20737775	20737900	.	-	.	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	CDS	20737901	20738056	1	-	0	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	exon	20737901	20738056	.	-	.	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	intron	20738057	20738157	.	-	.	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	CDS	20738158	20738493	0.38	-	0	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	exon	20738158	20738493	.	-	.	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
Ledus.S1	AUGUSTUS	start_codon	20738491	20738493	.	-	0	transcript_id "Ledus.S1G235100.t1"; gene_id "Ledus.S1G235100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5351.t1 is derived from g2790.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23573240	23573603	.	+	.	Ledus.S1G277200
Ledus.S1	AUGUSTUS	transcript	23573240	23573603	.	+	.	transcript_id "Ledus.S1G277200.t1"; gene_id "Ledus.S1G277200"
Ledus.S1	AUGUSTUS	start_codon	23573240	23573242	.	+	0	transcript_id "Ledus.S1G277200.t1"; gene_id "Ledus.S1G277200"
Ledus.S1	AUGUSTUS	CDS	23573240	23573394	0.63	+	0	transcript_id "Ledus.S1G277200.t1"; gene_id "Ledus.S1G277200"
Ledus.S1	AUGUSTUS	exon	23573240	23573394	.	+	.	transcript_id "Ledus.S1G277200.t1"; gene_id "Ledus.S1G277200"
Ledus.S1	AUGUSTUS	intron	23573395	23573470	.	+	.	transcript_id "Ledus.S1G277200.t1"; gene_id "Ledus.S1G277200"
Ledus.S1	AUGUSTUS	CDS	23573471	23573603	0.39	+	1	transcript_id "Ledus.S1G277200.t1"; gene_id "Ledus.S1G277200"
Ledus.S1	AUGUSTUS	exon	23573471	23573603	.	+	.	transcript_id "Ledus.S1G277200.t1"; gene_id "Ledus.S1G277200"
Ledus.S1	AUGUSTUS	stop_codon	23573604	23573606	.	+	0	transcript_id "Ledus.S1G277200.t1"; gene_id "Ledus.S1G277200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4220.t1 is derived from g1656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15625929	15628701	.	+	.	Ledus.S1G164100
Ledus.S1	AUGUSTUS	transcript	15625929	15628701	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	start_codon	15625929	15625931	.	+	0	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15625929	15626333	0.98	+	0	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15625929	15626333	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15626334	15626417	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15626418	15626564	1	+	0	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15626418	15626564	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15626565	15626659	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15626660	15626806	1	+	0	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15626660	15626806	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15626807	15627134	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15627135	15627197	1	+	0	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15627135	15627197	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15627198	15627345	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15627346	15627422	1	+	0	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15627346	15627422	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15627423	15627516	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15627517	15627622	1	+	1	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15627517	15627622	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15627623	15627765	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15627766	15627874	1	+	0	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15627766	15627874	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15627875	15627965	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15627966	15628111	1	+	2	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15627966	15628111	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15628112	15628300	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15628301	15628366	0.98	+	0	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15628301	15628366	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15628367	15628482	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15628483	15628701	0.97	+	0	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15628483	15628701	.	+	.	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	stop_codon	15628702	15628704	.	+	0	transcript_id "Ledus.S1G164100.t1"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	transcript	15625929	15628701	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	start_codon	15625929	15625931	.	+	0	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15625929	15626333	0.96	+	0	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15625929	15626333	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15626334	15626417	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15626418	15626564	1	+	0	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15626418	15626564	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15626565	15626659	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15626660	15626780	0.71	+	0	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15626660	15626780	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15626781	15626856	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15626857	15626897	1	+	2	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15626857	15626897	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15626898	15627134	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15627135	15627197	1	+	0	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15627135	15627197	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15627198	15627345	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15627346	15627422	1	+	0	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15627346	15627422	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15627423	15627516	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15627517	15627622	1	+	1	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15627517	15627622	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15627623	15627765	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15627766	15627874	1	+	0	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15627766	15627874	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15627875	15627965	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15627966	15628111	1	+	2	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15627966	15628111	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15628112	15628300	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15628301	15628366	0.97	+	0	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15628301	15628366	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	intron	15628367	15628482	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	CDS	15628483	15628701	0.99	+	0	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	exon	15628483	15628701	.	+	.	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
Ledus.S1	AUGUSTUS	stop_codon	15628702	15628704	.	+	0	transcript_id "Ledus.S1G164100.t2"; gene_id "Ledus.S1G164100"
# This transcript jg7532.t2 is derived from g12203.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7532.t3 is derived from g12203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7533.t1 is derived from g12204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3645362	3647072	.	+	.	Ledus.S5G031100
Ledus.S5	AUGUSTUS	transcript	3645362	3647072	.	+	.	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	start_codon	3645362	3645364	.	+	0	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	CDS	3645362	3645945	0.61	+	0	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	exon	3645362	3645945	.	+	.	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	intron	3645946	3646094	.	+	.	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	CDS	3646095	3646249	1	+	1	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	exon	3646095	3646249	.	+	.	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	intron	3646250	3646331	.	+	.	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	CDS	3646332	3646429	1	+	2	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	exon	3646332	3646429	.	+	.	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	intron	3646430	3646764	.	+	.	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	CDS	3646765	3646851	1	+	0	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	exon	3646765	3646851	.	+	.	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	intron	3646852	3646967	.	+	.	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	CDS	3646968	3647072	1	+	0	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	exon	3646968	3647072	.	+	.	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
Ledus.S5	AUGUSTUS	stop_codon	3647073	3647075	.	+	0	transcript_id "Ledus.S5G031100.t1"; gene_id "Ledus.S5G031100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11022.t1 is derived from g4640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1213274	1215442	.	-	.	Ledus.S4G017800
Ledus.S4	AUGUSTUS	transcript	1213274	1215442	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	stop_codon	1213271	1213273	.	-	0	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	CDS	1213274	1213324	0.67	-	0	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	exon	1213274	1213324	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	intron	1213325	1213408	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	CDS	1213409	1213488	0.49	-	2	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	exon	1213409	1213488	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	intron	1213489	1213599	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	CDS	1213600	1213644	0.49	-	2	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	exon	1213600	1213644	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	intron	1213645	1213860	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	CDS	1213861	1213912	1	-	0	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	exon	1213861	1213912	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	intron	1213913	1213995	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	CDS	1213996	1214058	0.98	-	0	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	exon	1213996	1214058	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	intron	1214059	1214160	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	CDS	1214161	1214268	0.97	-	0	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	exon	1214161	1214268	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	intron	1214269	1214446	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	CDS	1214447	1214485	1	-	0	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	exon	1214447	1214485	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	intron	1214486	1214579	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	CDS	1214580	1214696	1	-	0	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	exon	1214580	1214696	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	intron	1214697	1214835	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	CDS	1214836	1214916	1	-	0	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	exon	1214836	1214916	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	intron	1214917	1215121	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	CDS	1215122	1215187	0.81	-	0	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	exon	1215122	1215187	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	intron	1215188	1215322	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	CDS	1215323	1215442	0.81	-	0	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	exon	1215323	1215442	.	-	.	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
Ledus.S4	AUGUSTUS	start_codon	1215440	1215442	.	-	0	transcript_id "Ledus.S4G017800.t1"; gene_id "Ledus.S4G017800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13109.t1 is derived from g6919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5901337	5901732	.	-	.	Ledus.S6G017100
Ledus.S6	AUGUSTUS	transcript	5901337	5901732	.	-	.	transcript_id "Ledus.S6G017100.t1"; gene_id "Ledus.S6G017100"
Ledus.S6	AUGUSTUS	stop_codon	5901334	5901336	.	-	0	transcript_id "Ledus.S6G017100.t1"; gene_id "Ledus.S6G017100"
Ledus.S6	AUGUSTUS	CDS	5901337	5901732	0.76	-	0	transcript_id "Ledus.S6G017100.t1"; gene_id "Ledus.S6G017100"
Ledus.S6	AUGUSTUS	exon	5901337	5901732	.	-	.	transcript_id "Ledus.S6G017100.t1"; gene_id "Ledus.S6G017100"
Ledus.S6	AUGUSTUS	start_codon	5901730	5901732	.	-	0	transcript_id "Ledus.S6G017100.t1"; gene_id "Ledus.S6G017100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8992.t1 is derived from g10022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3736421	3737599	.	+	.	Ledus.S3G046900
Ledus.S3	AUGUSTUS	transcript	3736421	3737599	.	+	.	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	start_codon	3736421	3736423	.	+	0	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	CDS	3736421	3736955	0.63	+	0	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	exon	3736421	3736955	.	+	.	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	intron	3736956	3737056	.	+	.	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	CDS	3737057	3737109	0.99	+	2	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	exon	3737057	3737109	.	+	.	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	intron	3737110	3737264	.	+	.	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	CDS	3737265	3737428	0.85	+	0	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	exon	3737265	3737428	.	+	.	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	intron	3737429	3737559	.	+	.	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	CDS	3737560	3737599	0.85	+	1	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	exon	3737560	3737599	.	+	.	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
Ledus.S3	AUGUSTUS	stop_codon	3737600	3737602	.	+	0	transcript_id "Ledus.S3G046900.t1"; gene_id "Ledus.S3G046900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1708.t1 is derived from g8569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12011685	12012152	.	+	.	Ledus.S2G159000
Ledus.S2	AUGUSTUS	transcript	12011685	12012152	.	+	.	transcript_id "Ledus.S2G159000.t1"; gene_id "Ledus.S2G159000"
Ledus.S2	AUGUSTUS	start_codon	12011685	12011687	.	+	0	transcript_id "Ledus.S2G159000.t1"; gene_id "Ledus.S2G159000"
Ledus.S2	AUGUSTUS	CDS	12011685	12012152	0.72	+	0	transcript_id "Ledus.S2G159000.t1"; gene_id "Ledus.S2G159000"
Ledus.S2	AUGUSTUS	exon	12011685	12012152	.	+	.	transcript_id "Ledus.S2G159000.t1"; gene_id "Ledus.S2G159000"
Ledus.S2	AUGUSTUS	stop_codon	12012153	12012155	.	+	0	transcript_id "Ledus.S2G159000.t1"; gene_id "Ledus.S2G159000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1009.t1 is derived from g7870.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6711294	6716420	.	+	.	Ledus.S2G089100
Ledus.S2	AUGUSTUS	transcript	6711294	6716420	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	start_codon	6711294	6711296	.	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6711294	6711764	0.92	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6711294	6711764	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6711765	6711854	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6711855	6712022	1	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6711855	6712022	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6712023	6712101	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6712102	6712227	1	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6712102	6712227	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6712228	6712310	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6712311	6712531	1	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6712311	6712531	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6712532	6712619	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6712620	6712806	1	+	1	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6712620	6712806	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6712807	6712881	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6712882	6712961	1	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6712882	6712961	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6712962	6713083	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6713084	6713186	1	+	1	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6713084	6713186	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6713187	6713276	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6713277	6713511	1	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6713277	6713511	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6713512	6713734	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6713735	6714000	1	+	2	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6713735	6714000	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6714001	6714221	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6714222	6714353	1	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6714222	6714353	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6714354	6714498	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6714499	6714592	1	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6714499	6714592	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6714593	6714671	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6714672	6714844	1	+	2	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6714672	6714844	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6714845	6715019	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6715020	6715166	0.99	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6715020	6715166	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6715167	6715353	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6715354	6715545	0.99	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6715354	6715545	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6715546	6715638	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6715639	6715826	1	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6715639	6715826	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6715827	6715913	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6715914	6716173	0.51	+	1	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6715914	6716173	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	intron	6716174	6716277	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	CDS	6716278	6716420	0.52	+	2	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	exon	6716278	6716420	.	+	.	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
Ledus.S2	AUGUSTUS	stop_codon	6716421	6716423	.	+	0	transcript_id "Ledus.S2G089100.t1"; gene_id "Ledus.S2G089100"
# This transcript jg3777.t2 is derived from g1213.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3777.t3 is derived from g1213.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3778.t1 is derived from g1214.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11946937	11951850	.	-	.	Ledus.S1G119900
Ledus.S1	AUGUSTUS	transcript	11946937	11951850	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	stop_codon	11946934	11946936	.	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11946937	11947242	1	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11946937	11947242	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11947243	11947328	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11947329	11947566	0.8	-	1	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11947329	11947566	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11947567	11947689	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11947690	11947953	0.8	-	1	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11947690	11947953	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11947954	11948080	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11948081	11948163	1	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11948081	11948163	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11948164	11948241	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11948242	11948331	1	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11948242	11948331	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11948332	11948498	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11948499	11948642	1	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11948499	11948642	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11948643	11948735	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11948736	11948819	1	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11948736	11948819	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11948820	11949028	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11949029	11949196	1	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11949029	11949196	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11949197	11949396	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11949397	11949489	1	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11949397	11949489	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11949490	11949717	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11949718	11949789	1	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11949718	11949789	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11949790	11949918	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11949919	11949999	1	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11949919	11949999	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11950000	11950124	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11950125	11950193	1	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11950125	11950193	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11950194	11950451	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11950452	11950527	1	-	1	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11950452	11950527	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11950528	11950645	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11950646	11950765	1	-	1	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11950646	11950765	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11950766	11950864	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11950865	11950940	1	-	2	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11950865	11950940	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	intron	11950941	11951102	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	CDS	11951103	11951850	0.99	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	exon	11951103	11951850	.	-	.	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
Ledus.S1	AUGUSTUS	start_codon	11951848	11951850	.	-	0	transcript_id "Ledus.S1G119900.t1"; gene_id "Ledus.S1G119900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8900.t1 is derived from g9930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2958515	2961233	.	-	.	Ledus.S3G037700
Ledus.S3	AUGUSTUS	transcript	2958515	2961233	.	-	.	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	stop_codon	2958512	2958514	.	-	0	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	CDS	2958515	2959327	0.74	-	0	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	exon	2958515	2959327	.	-	.	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	intron	2959328	2959415	.	-	.	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	CDS	2959416	2959721	1	-	0	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	exon	2959416	2959721	.	-	.	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	intron	2959722	2959815	.	-	.	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	CDS	2959816	2960144	1	-	2	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	exon	2959816	2960144	.	-	.	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	intron	2960145	2960242	.	-	.	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	CDS	2960243	2961233	0.99	-	0	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	exon	2960243	2961233	.	-	.	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
Ledus.S3	AUGUSTUS	start_codon	2961231	2961233	.	-	0	transcript_id "Ledus.S3G037700.t1"; gene_id "Ledus.S3G037700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg34.t1 is derived from g9546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C12	AUGUSTUS	gene	143966	144343	.	-	.	Ledus.C12G000500
Ledus.C12	AUGUSTUS	transcript	143966	144343	.	-	.	transcript_id "Ledus.C12G000500.t1"; gene_id "Ledus.C12G000500"
Ledus.C12	AUGUSTUS	stop_codon	143963	143965	.	-	0	transcript_id "Ledus.C12G000500.t1"; gene_id "Ledus.C12G000500"
Ledus.C12	AUGUSTUS	CDS	143966	144343	0.58	-	0	transcript_id "Ledus.C12G000500.t1"; gene_id "Ledus.C12G000500"
Ledus.C12	AUGUSTUS	exon	143966	144343	.	-	.	transcript_id "Ledus.C12G000500.t1"; gene_id "Ledus.C12G000500"
Ledus.C12	AUGUSTUS	start_codon	144341	144343	.	-	0	transcript_id "Ledus.C12G000500.t1"; gene_id "Ledus.C12G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6369.t1 is derived from g3812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30798875	30800124	.	-	.	Ledus.S1G379000
Ledus.S1	AUGUSTUS	transcript	30798875	30800124	.	-	.	transcript_id "Ledus.S1G379000.t1"; gene_id "Ledus.S1G379000"
Ledus.S1	AUGUSTUS	stop_codon	30798872	30798874	.	-	0	transcript_id "Ledus.S1G379000.t1"; gene_id "Ledus.S1G379000"
Ledus.S1	AUGUSTUS	CDS	30798875	30799052	1	-	1	transcript_id "Ledus.S1G379000.t1"; gene_id "Ledus.S1G379000"
Ledus.S1	AUGUSTUS	exon	30798875	30799052	.	-	.	transcript_id "Ledus.S1G379000.t1"; gene_id "Ledus.S1G379000"
Ledus.S1	AUGUSTUS	intron	30799053	30799234	.	-	.	transcript_id "Ledus.S1G379000.t1"; gene_id "Ledus.S1G379000"
Ledus.S1	AUGUSTUS	CDS	30799235	30799461	1	-	0	transcript_id "Ledus.S1G379000.t1"; gene_id "Ledus.S1G379000"
Ledus.S1	AUGUSTUS	exon	30799235	30799461	.	-	.	transcript_id "Ledus.S1G379000.t1"; gene_id "Ledus.S1G379000"
Ledus.S1	AUGUSTUS	intron	30799462	30799854	.	-	.	transcript_id "Ledus.S1G379000.t1"; gene_id "Ledus.S1G379000"
Ledus.S1	AUGUSTUS	CDS	30799855	30800124	0.91	-	0	transcript_id "Ledus.S1G379000.t1"; gene_id "Ledus.S1G379000"
Ledus.S1	AUGUSTUS	exon	30799855	30800124	.	-	.	transcript_id "Ledus.S1G379000.t1"; gene_id "Ledus.S1G379000"
Ledus.S1	AUGUSTUS	start_codon	30800122	30800124	.	-	0	transcript_id "Ledus.S1G379000.t1"; gene_id "Ledus.S1G379000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4249.t1 is derived from g1685.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15764754	15765176	.	-	.	Ledus.S1G167000
Ledus.S1	AUGUSTUS	transcript	15764754	15765176	.	-	.	transcript_id "Ledus.S1G167000.t1"; gene_id "Ledus.S1G167000"
Ledus.S1	AUGUSTUS	stop_codon	15764751	15764753	.	-	0	transcript_id "Ledus.S1G167000.t1"; gene_id "Ledus.S1G167000"
Ledus.S1	AUGUSTUS	CDS	15764754	15765176	0.97	-	0	transcript_id "Ledus.S1G167000.t1"; gene_id "Ledus.S1G167000"
Ledus.S1	AUGUSTUS	exon	15764754	15765176	.	-	.	transcript_id "Ledus.S1G167000.t1"; gene_id "Ledus.S1G167000"
Ledus.S1	AUGUSTUS	start_codon	15765174	15765176	.	-	0	transcript_id "Ledus.S1G167000.t1"; gene_id "Ledus.S1G167000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9547.t1 is derived from g10577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7741518	7744399	.	-	.	Ledus.S3G102400
Ledus.S3	AUGUSTUS	transcript	7741518	7743340	.	-	.	transcript_id "Ledus.S3G102400.t1"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	stop_codon	7741515	7741517	.	-	0	transcript_id "Ledus.S3G102400.t1"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	CDS	7741518	7741631	0.79	-	0	transcript_id "Ledus.S3G102400.t1"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	exon	7741518	7741631	.	-	.	transcript_id "Ledus.S3G102400.t1"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	intron	7741632	7741844	.	-	.	transcript_id "Ledus.S3G102400.t1"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	CDS	7741845	7742032	0.71	-	2	transcript_id "Ledus.S3G102400.t1"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	exon	7741845	7742032	.	-	.	transcript_id "Ledus.S3G102400.t1"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	intron	7742033	7742160	.	-	.	transcript_id "Ledus.S3G102400.t1"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	CDS	7742161	7743340	0.75	-	0	transcript_id "Ledus.S3G102400.t1"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	exon	7742161	7743340	.	-	.	transcript_id "Ledus.S3G102400.t1"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	start_codon	7743338	7743340	.	-	0	transcript_id "Ledus.S3G102400.t1"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	transcript	7741518	7744399	.	-	.	transcript_id "Ledus.S3G102400.t2"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	stop_codon	7741515	7741517	.	-	0	transcript_id "Ledus.S3G102400.t2"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	CDS	7741518	7741631	0.73	-	0	transcript_id "Ledus.S3G102400.t2"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	exon	7741518	7741631	.	-	.	transcript_id "Ledus.S3G102400.t2"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	intron	7741632	7741844	.	-	.	transcript_id "Ledus.S3G102400.t2"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	CDS	7741845	7742032	0.56	-	2	transcript_id "Ledus.S3G102400.t2"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	exon	7741845	7742032	.	-	.	transcript_id "Ledus.S3G102400.t2"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	intron	7742033	7742160	.	-	.	transcript_id "Ledus.S3G102400.t2"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	CDS	7742161	7744399	0.58	-	0	transcript_id "Ledus.S3G102400.t2"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	exon	7742161	7744399	.	-	.	transcript_id "Ledus.S3G102400.t2"; gene_id "Ledus.S3G102400"
Ledus.S3	AUGUSTUS	start_codon	7744397	7744399	.	-	0	transcript_id "Ledus.S3G102400.t2"; gene_id "Ledus.S3G102400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7827.t1 is derived from g12498.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7283407	7297291	.	+	.	Ledus.S5G060500
Ledus.S5	AUGUSTUS	transcript	7283407	7297291	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	start_codon	7283407	7283409	.	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7283407	7283661	0.3	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7283407	7283661	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7283662	7283902	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7283903	7284055	0.83	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7283903	7284055	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7284056	7284150	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7284151	7284396	0.77	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7284151	7284396	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7284397	7284482	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7284483	7284753	0.31	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7284483	7284753	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7284754	7285196	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7285197	7285236	0.2	+	2	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7285197	7285236	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7285237	7285342	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7285343	7285681	0.47	+	1	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7285343	7285681	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7285682	7285873	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7285874	7286033	0.93	+	1	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7285874	7286033	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7286034	7286128	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7286129	7286359	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7286129	7286359	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7286360	7286516	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7286517	7287020	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7286517	7287020	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7287021	7287106	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7287107	7287379	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7287107	7287379	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7287380	7287458	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7287459	7288394	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7287459	7288394	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7288395	7288567	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7288568	7288765	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7288568	7288765	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7288766	7288856	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7288857	7289069	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7288857	7289069	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7289070	7289157	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7289158	7289405	0.98	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7289158	7289405	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7289406	7289477	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7289478	7289769	0.96	+	1	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7289478	7289769	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7289770	7290155	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7290156	7290326	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7290156	7290326	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7290327	7290428	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7290429	7290665	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7290429	7290665	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7290666	7290837	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7290838	7290936	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7290838	7290936	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7290937	7291046	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7291047	7291154	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7291047	7291154	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7291155	7291243	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7291244	7291387	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7291244	7291387	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7291388	7291485	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7291486	7292214	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7291486	7292214	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7292215	7292329	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7292330	7292511	0.54	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7292330	7292511	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7292512	7292649	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7292650	7292860	1	+	1	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7292650	7292860	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7292861	7292944	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7292945	7293121	0.94	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7292945	7293121	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7293122	7293216	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7293217	7293462	0.98	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7293217	7293462	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7293463	7293609	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7293610	7293759	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7293610	7293759	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7293760	7293857	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7293858	7294638	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7293858	7294638	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7294639	7294739	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7294740	7294835	0.86	+	2	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7294740	7294835	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7294836	7295213	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7295214	7295247	0.52	+	2	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7295214	7295247	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7295248	7295536	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7295537	7295640	0.92	+	1	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7295537	7295640	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7295641	7295740	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7295741	7296200	1	+	2	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7295741	7296200	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7296201	7296292	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7296293	7296392	1	+	1	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7296293	7296392	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7296393	7296542	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7296543	7296733	1	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7296543	7296733	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	intron	7296734	7296906	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	CDS	7296907	7297291	0.84	+	1	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	exon	7296907	7297291	.	+	.	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
Ledus.S5	AUGUSTUS	stop_codon	7297292	7297294	.	+	0	transcript_id "Ledus.S5G060500.t1"; gene_id "Ledus.S5G060500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg261.t1 is derived from g7122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1278762	1280612	.	+	.	Ledus.S2G014300
Ledus.S2	AUGUSTUS	transcript	1278762	1280612	.	+	.	transcript_id "Ledus.S2G014300.t1"; gene_id "Ledus.S2G014300"
Ledus.S2	AUGUSTUS	start_codon	1278762	1278764	.	+	0	transcript_id "Ledus.S2G014300.t1"; gene_id "Ledus.S2G014300"
Ledus.S2	AUGUSTUS	CDS	1278762	1280612	1	+	0	transcript_id "Ledus.S2G014300.t1"; gene_id "Ledus.S2G014300"
Ledus.S2	AUGUSTUS	exon	1278762	1280612	.	+	.	transcript_id "Ledus.S2G014300.t1"; gene_id "Ledus.S2G014300"
Ledus.S2	AUGUSTUS	stop_codon	1280613	1280615	.	+	0	transcript_id "Ledus.S2G014300.t1"; gene_id "Ledus.S2G014300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7561.t1 is derived from g12232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4064924	4066123	.	+	.	Ledus.S5G033900
Ledus.S5	AUGUSTUS	transcript	4064924	4066123	.	+	.	transcript_id "Ledus.S5G033900.t1"; gene_id "Ledus.S5G033900"
Ledus.S5	AUGUSTUS	start_codon	4064924	4064926	.	+	0	transcript_id "Ledus.S5G033900.t1"; gene_id "Ledus.S5G033900"
Ledus.S5	AUGUSTUS	CDS	4064924	4066123	0.79	+	0	transcript_id "Ledus.S5G033900.t1"; gene_id "Ledus.S5G033900"
Ledus.S5	AUGUSTUS	exon	4064924	4066123	.	+	.	transcript_id "Ledus.S5G033900.t1"; gene_id "Ledus.S5G033900"
Ledus.S5	AUGUSTUS	stop_codon	4066124	4066126	.	+	0	transcript_id "Ledus.S5G033900.t1"; gene_id "Ledus.S5G033900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3402.t1 is derived from g837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8097450	8099092	.	+	.	Ledus.S1G082300
Ledus.S1	AUGUSTUS	transcript	8097450	8099092	.	+	.	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	start_codon	8097450	8097452	.	+	0	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	CDS	8097450	8097857	0.77	+	0	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	exon	8097450	8097857	.	+	.	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	intron	8097858	8097933	.	+	.	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	CDS	8097934	8098044	1	+	0	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	exon	8097934	8098044	.	+	.	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	intron	8098045	8098116	.	+	.	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	CDS	8098117	8098336	1	+	0	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	exon	8098117	8098336	.	+	.	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	intron	8098337	8098418	.	+	.	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	CDS	8098419	8098752	1	+	2	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	exon	8098419	8098752	.	+	.	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	intron	8098753	8098843	.	+	.	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	CDS	8098844	8098905	1	+	1	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	exon	8098844	8098905	.	+	.	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	intron	8098906	8099018	.	+	.	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	CDS	8099019	8099092	0.62	+	2	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	exon	8099019	8099092	.	+	.	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
Ledus.S1	AUGUSTUS	stop_codon	8099093	8099095	.	+	0	transcript_id "Ledus.S1G082300.t1"; gene_id "Ledus.S1G082300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2132.t1 is derived from g8995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14937035	14939143	.	-	.	Ledus.S2G201400
Ledus.S2	AUGUSTUS	transcript	14937035	14939143	.	-	.	transcript_id "Ledus.S2G201400.t1"; gene_id "Ledus.S2G201400"
Ledus.S2	AUGUSTUS	stop_codon	14937032	14937034	.	-	0	transcript_id "Ledus.S2G201400.t1"; gene_id "Ledus.S2G201400"
Ledus.S2	AUGUSTUS	CDS	14937035	14939143	1	-	0	transcript_id "Ledus.S2G201400.t1"; gene_id "Ledus.S2G201400"
Ledus.S2	AUGUSTUS	exon	14937035	14939143	.	-	.	transcript_id "Ledus.S2G201400.t1"; gene_id "Ledus.S2G201400"
Ledus.S2	AUGUSTUS	start_codon	14939141	14939143	.	-	0	transcript_id "Ledus.S2G201400.t1"; gene_id "Ledus.S2G201400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2467.t1 is derived from g9330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18326877	18327767	.	-	.	Ledus.S2G234900
Ledus.S2	AUGUSTUS	transcript	18326877	18327767	.	-	.	transcript_id "Ledus.S2G234900.t1"; gene_id "Ledus.S2G234900"
Ledus.S2	AUGUSTUS	stop_codon	18326874	18326876	.	-	0	transcript_id "Ledus.S2G234900.t1"; gene_id "Ledus.S2G234900"
Ledus.S2	AUGUSTUS	CDS	18326877	18327193	0.98	-	2	transcript_id "Ledus.S2G234900.t1"; gene_id "Ledus.S2G234900"
Ledus.S2	AUGUSTUS	exon	18326877	18327193	.	-	.	transcript_id "Ledus.S2G234900.t1"; gene_id "Ledus.S2G234900"
Ledus.S2	AUGUSTUS	intron	18327194	18327508	.	-	.	transcript_id "Ledus.S2G234900.t1"; gene_id "Ledus.S2G234900"
Ledus.S2	AUGUSTUS	CDS	18327509	18327767	0.99	-	0	transcript_id "Ledus.S2G234900.t1"; gene_id "Ledus.S2G234900"
Ledus.S2	AUGUSTUS	exon	18327509	18327767	.	-	.	transcript_id "Ledus.S2G234900.t1"; gene_id "Ledus.S2G234900"
Ledus.S2	AUGUSTUS	start_codon	18327765	18327767	.	-	0	transcript_id "Ledus.S2G234900.t1"; gene_id "Ledus.S2G234900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7557.t1 is derived from g12228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4047631	4050569	.	-	.	Ledus.S5G033500
Ledus.S5	AUGUSTUS	transcript	4047631	4050569	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	stop_codon	4047628	4047630	.	-	0	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	CDS	4047631	4047865	0.98	-	1	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	exon	4047631	4047865	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	intron	4047866	4047954	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	CDS	4047955	4048027	1	-	2	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	exon	4047955	4048027	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	intron	4048028	4048192	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	CDS	4048193	4048319	1	-	0	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	exon	4048193	4048319	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	intron	4048320	4048439	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	CDS	4048440	4048485	1	-	1	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	exon	4048440	4048485	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	intron	4048486	4048661	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	CDS	4048662	4048869	0.99	-	2	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	exon	4048662	4048869	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	intron	4048870	4049034	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	CDS	4049035	4049184	1	-	2	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	exon	4049035	4049184	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	intron	4049185	4049278	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	CDS	4049279	4049336	1	-	0	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	exon	4049279	4049336	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	intron	4049337	4049478	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	CDS	4049479	4049588	1	-	2	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	exon	4049479	4049588	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	intron	4049589	4049870	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	CDS	4049871	4049896	0.92	-	1	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	exon	4049871	4049896	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	intron	4049897	4050157	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	CDS	4050158	4050277	0.89	-	1	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	exon	4050158	4050277	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	intron	4050278	4050414	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	CDS	4050415	4050569	0.4	-	0	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	exon	4050415	4050569	.	-	.	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
Ledus.S5	AUGUSTUS	start_codon	4050567	4050569	.	-	0	transcript_id "Ledus.S5G033500.t1"; gene_id "Ledus.S5G033500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12996.t1 is derived from g6806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2124794	2125270	.	-	.	Ledus.S6G005800
Ledus.S6	AUGUSTUS	transcript	2124794	2125270	.	-	.	transcript_id "Ledus.S6G005800.t1"; gene_id "Ledus.S6G005800"
Ledus.S6	AUGUSTUS	stop_codon	2124791	2124793	.	-	0	transcript_id "Ledus.S6G005800.t1"; gene_id "Ledus.S6G005800"
Ledus.S6	AUGUSTUS	CDS	2124794	2125270	0.38	-	0	transcript_id "Ledus.S6G005800.t1"; gene_id "Ledus.S6G005800"
Ledus.S6	AUGUSTUS	exon	2124794	2125270	.	-	.	transcript_id "Ledus.S6G005800.t1"; gene_id "Ledus.S6G005800"
Ledus.S6	AUGUSTUS	start_codon	2125268	2125270	.	-	0	transcript_id "Ledus.S6G005800.t1"; gene_id "Ledus.S6G005800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2840.t1 is derived from g274.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4123680	4124798	.	+	.	Ledus.S1G026100
Ledus.S1	AUGUSTUS	transcript	4123680	4124798	.	+	.	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	start_codon	4123680	4123682	.	+	0	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	CDS	4123680	4123684	0.94	+	0	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	exon	4123680	4123684	.	+	.	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	intron	4123685	4123885	.	+	.	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	CDS	4123886	4124025	1	+	1	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	exon	4123886	4124025	.	+	.	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	intron	4124026	4124103	.	+	.	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	CDS	4124104	4124398	1	+	2	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	exon	4124104	4124398	.	+	.	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	intron	4124399	4124494	.	+	.	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	CDS	4124495	4124798	1	+	1	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	exon	4124495	4124798	.	+	.	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
Ledus.S1	AUGUSTUS	stop_codon	4124799	4124801	.	+	0	transcript_id "Ledus.S1G026100.t1"; gene_id "Ledus.S1G026100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2171.t1 is derived from g9034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15594792	15595058	.	+	.	Ledus.S2G205300
Ledus.S2	AUGUSTUS	transcript	15594792	15595058	.	+	.	transcript_id "Ledus.S2G205300.t1"; gene_id "Ledus.S2G205300"
Ledus.S2	AUGUSTUS	start_codon	15594792	15594794	.	+	0	transcript_id "Ledus.S2G205300.t1"; gene_id "Ledus.S2G205300"
Ledus.S2	AUGUSTUS	CDS	15594792	15595058	1	+	0	transcript_id "Ledus.S2G205300.t1"; gene_id "Ledus.S2G205300"
Ledus.S2	AUGUSTUS	exon	15594792	15595058	.	+	.	transcript_id "Ledus.S2G205300.t1"; gene_id "Ledus.S2G205300"
Ledus.S2	AUGUSTUS	stop_codon	15595059	15595061	.	+	0	transcript_id "Ledus.S2G205300.t1"; gene_id "Ledus.S2G205300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3803.t1 is derived from g1239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12411548	12412280	.	+	.	Ledus.S1G122400
Ledus.S1	AUGUSTUS	transcript	12411548	12412280	.	+	.	transcript_id "Ledus.S1G122400.t1"; gene_id "Ledus.S1G122400"
Ledus.S1	AUGUSTUS	start_codon	12411548	12411550	.	+	0	transcript_id "Ledus.S1G122400.t1"; gene_id "Ledus.S1G122400"
Ledus.S1	AUGUSTUS	CDS	12411548	12411601	0.98	+	0	transcript_id "Ledus.S1G122400.t1"; gene_id "Ledus.S1G122400"
Ledus.S1	AUGUSTUS	exon	12411548	12411601	.	+	.	transcript_id "Ledus.S1G122400.t1"; gene_id "Ledus.S1G122400"
Ledus.S1	AUGUSTUS	intron	12411602	12411755	.	+	.	transcript_id "Ledus.S1G122400.t1"; gene_id "Ledus.S1G122400"
Ledus.S1	AUGUSTUS	CDS	12411756	12411788	0.43	+	0	transcript_id "Ledus.S1G122400.t1"; gene_id "Ledus.S1G122400"
Ledus.S1	AUGUSTUS	exon	12411756	12411788	.	+	.	transcript_id "Ledus.S1G122400.t1"; gene_id "Ledus.S1G122400"
Ledus.S1	AUGUSTUS	intron	12411789	12411935	.	+	.	transcript_id "Ledus.S1G122400.t1"; gene_id "Ledus.S1G122400"
Ledus.S1	AUGUSTUS	CDS	12411936	12412280	0.54	+	0	transcript_id "Ledus.S1G122400.t1"; gene_id "Ledus.S1G122400"
Ledus.S1	AUGUSTUS	exon	12411936	12412280	.	+	.	transcript_id "Ledus.S1G122400.t1"; gene_id "Ledus.S1G122400"
Ledus.S1	AUGUSTUS	stop_codon	12412281	12412283	.	+	0	transcript_id "Ledus.S1G122400.t1"; gene_id "Ledus.S1G122400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10120.t1 is derived from g11150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12932099	12932341	.	-	.	Ledus.S3G159700
Ledus.S3	AUGUSTUS	transcript	12932099	12932341	.	-	.	transcript_id "Ledus.S3G159700.t1"; gene_id "Ledus.S3G159700"
Ledus.S3	AUGUSTUS	stop_codon	12932096	12932098	.	-	0	transcript_id "Ledus.S3G159700.t1"; gene_id "Ledus.S3G159700"
Ledus.S3	AUGUSTUS	CDS	12932099	12932341	0.87	-	0	transcript_id "Ledus.S3G159700.t1"; gene_id "Ledus.S3G159700"
Ledus.S3	AUGUSTUS	exon	12932099	12932341	.	-	.	transcript_id "Ledus.S3G159700.t1"; gene_id "Ledus.S3G159700"
Ledus.S3	AUGUSTUS	start_codon	12932339	12932341	.	-	0	transcript_id "Ledus.S3G159700.t1"; gene_id "Ledus.S3G159700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12035.t1 is derived from g5654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9037542	9041478	.	-	.	Ledus.S4G119100
Ledus.S4	AUGUSTUS	transcript	9037542	9041478	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	stop_codon	9037539	9037541	.	-	0	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9037542	9037596	0.57	-	1	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9037542	9037596	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9037597	9037694	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9037695	9037716	0.63	-	2	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9037695	9037716	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9037717	9037782	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9037783	9037800	0.63	-	2	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9037783	9037800	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9037801	9037893	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9037894	9037966	1	-	0	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9037894	9037966	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9037967	9038086	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9038087	9038251	1	-	0	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9038087	9038251	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9038252	9038344	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9038345	9038412	1	-	2	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9038345	9038412	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9038413	9038652	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9038653	9038788	0.98	-	0	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9038653	9038788	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9038789	9038891	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9038892	9038997	0.96	-	1	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9038892	9038997	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9038998	9039141	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9039142	9039292	1	-	2	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9039142	9039292	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9039293	9039393	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9039394	9039458	0.92	-	1	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9039394	9039458	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9039459	9039648	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9039649	9039803	1	-	0	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9039649	9039803	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9039804	9039961	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9039962	9040024	1	-	0	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9039962	9040024	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9040025	9040166	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9040167	9040238	1	-	0	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9040167	9040238	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9040239	9040417	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9040418	9040463	1	-	1	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9040418	9040463	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9040464	9040654	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9040655	9040766	1	-	2	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9040655	9040766	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9040767	9040889	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9040890	9041024	1	-	2	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9040890	9041024	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	intron	9041025	9041279	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	CDS	9041280	9041478	0.9	-	0	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	exon	9041280	9041478	.	-	.	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
Ledus.S4	AUGUSTUS	start_codon	9041476	9041478	.	-	0	transcript_id "Ledus.S4G119100.t1"; gene_id "Ledus.S4G119100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9773.t1 is derived from g10803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9750119	9750426	.	+	.	Ledus.S3G125000
Ledus.S3	AUGUSTUS	transcript	9750119	9750426	.	+	.	transcript_id "Ledus.S3G125000.t1"; gene_id "Ledus.S3G125000"
Ledus.S3	AUGUSTUS	start_codon	9750119	9750121	.	+	0	transcript_id "Ledus.S3G125000.t1"; gene_id "Ledus.S3G125000"
Ledus.S3	AUGUSTUS	CDS	9750119	9750157	0.5	+	0	transcript_id "Ledus.S3G125000.t1"; gene_id "Ledus.S3G125000"
Ledus.S3	AUGUSTUS	exon	9750119	9750157	.	+	.	transcript_id "Ledus.S3G125000.t1"; gene_id "Ledus.S3G125000"
Ledus.S3	AUGUSTUS	intron	9750158	9750237	.	+	.	transcript_id "Ledus.S3G125000.t1"; gene_id "Ledus.S3G125000"
Ledus.S3	AUGUSTUS	CDS	9750238	9750426	0.62	+	0	transcript_id "Ledus.S3G125000.t1"; gene_id "Ledus.S3G125000"
Ledus.S3	AUGUSTUS	exon	9750238	9750426	.	+	.	transcript_id "Ledus.S3G125000.t1"; gene_id "Ledus.S3G125000"
Ledus.S3	AUGUSTUS	stop_codon	9750427	9750429	.	+	0	transcript_id "Ledus.S3G125000.t1"; gene_id "Ledus.S3G125000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6612.t1 is derived from g4055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32648597	32649649	.	+	.	Ledus.S1G403300
Ledus.S1	AUGUSTUS	transcript	32648597	32649649	.	+	.	transcript_id "Ledus.S1G403300.t1"; gene_id "Ledus.S1G403300"
Ledus.S1	AUGUSTUS	start_codon	32648597	32648599	.	+	0	transcript_id "Ledus.S1G403300.t1"; gene_id "Ledus.S1G403300"
Ledus.S1	AUGUSTUS	CDS	32648597	32649649	0.61	+	0	transcript_id "Ledus.S1G403300.t1"; gene_id "Ledus.S1G403300"
Ledus.S1	AUGUSTUS	exon	32648597	32649649	.	+	.	transcript_id "Ledus.S1G403300.t1"; gene_id "Ledus.S1G403300"
Ledus.S1	AUGUSTUS	stop_codon	32649650	32649652	.	+	0	transcript_id "Ledus.S1G403300.t1"; gene_id "Ledus.S1G403300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8995.t1 is derived from g10025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3741477	3742389	.	-	.	Ledus.S3G047200
Ledus.S3	AUGUSTUS	transcript	3741477	3742389	.	-	.	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	stop_codon	3741474	3741476	.	-	0	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	CDS	3741477	3741588	1	-	1	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	exon	3741477	3741588	.	-	.	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	intron	3741589	3741684	.	-	.	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	CDS	3741685	3741741	1	-	1	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	exon	3741685	3741741	.	-	.	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	intron	3741742	3741826	.	-	.	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	CDS	3741827	3741885	1	-	0	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	exon	3741827	3741885	.	-	.	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	intron	3741886	3741965	.	-	.	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	CDS	3741966	3742199	1	-	0	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	exon	3741966	3742199	.	-	.	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	intron	3742200	3742278	.	-	.	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	CDS	3742279	3742389	0.71	-	0	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	exon	3742279	3742389	.	-	.	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
Ledus.S3	AUGUSTUS	start_codon	3742387	3742389	.	-	0	transcript_id "Ledus.S3G047200.t1"; gene_id "Ledus.S3G047200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12691.t1 is derived from g6313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13890770	13893423	.	-	.	Ledus.S4G184700
Ledus.S4	AUGUSTUS	transcript	13890770	13893423	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	stop_codon	13890767	13890769	.	-	0	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	CDS	13890770	13891056	1	-	2	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	exon	13890770	13891056	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	intron	13891057	13891152	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	CDS	13891153	13891228	0.79	-	0	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	exon	13891153	13891228	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	intron	13891229	13891326	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	CDS	13891327	13891352	0.72	-	2	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	exon	13891327	13891352	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	intron	13891353	13891474	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	CDS	13891475	13891661	0.7	-	0	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	exon	13891475	13891661	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	intron	13891662	13891758	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	CDS	13891759	13891913	0.87	-	2	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	exon	13891759	13891913	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	intron	13891914	13892092	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	CDS	13892093	13892243	0.47	-	0	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	exon	13892093	13892243	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	intron	13892244	13892414	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	CDS	13892415	13892696	0.6	-	0	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	exon	13892415	13892696	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	intron	13892697	13892775	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	CDS	13892776	13892853	1	-	0	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	exon	13892776	13892853	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	intron	13892854	13892925	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	CDS	13892926	13893122	1	-	2	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	exon	13892926	13893122	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	intron	13893123	13893212	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	CDS	13893213	13893423	0.94	-	0	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	exon	13893213	13893423	.	-	.	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
Ledus.S4	AUGUSTUS	start_codon	13893421	13893423	.	-	0	transcript_id "Ledus.S4G184700.t1"; gene_id "Ledus.S4G184700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10760.t1 is derived from g11792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17516747	17518057	.	-	.	Ledus.S3G223700
Ledus.S3	AUGUSTUS	transcript	17516747	17518057	.	-	.	transcript_id "Ledus.S3G223700.t1"; gene_id "Ledus.S3G223700"
Ledus.S3	AUGUSTUS	stop_codon	17516744	17516746	.	-	0	transcript_id "Ledus.S3G223700.t1"; gene_id "Ledus.S3G223700"
Ledus.S3	AUGUSTUS	CDS	17516747	17518057	0.6	-	0	transcript_id "Ledus.S3G223700.t1"; gene_id "Ledus.S3G223700"
Ledus.S3	AUGUSTUS	exon	17516747	17518057	.	-	.	transcript_id "Ledus.S3G223700.t1"; gene_id "Ledus.S3G223700"
Ledus.S3	AUGUSTUS	start_codon	17518055	17518057	.	-	0	transcript_id "Ledus.S3G223700.t1"; gene_id "Ledus.S3G223700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3310.t1 is derived from g745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7431289	7432078	.	-	.	Ledus.S1G073100
Ledus.S1	AUGUSTUS	transcript	7431289	7432078	.	-	.	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	stop_codon	7431286	7431288	.	-	0	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	CDS	7431289	7431354	1	-	0	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	exon	7431289	7431354	.	-	.	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	intron	7431355	7431435	.	-	.	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	CDS	7431436	7431513	1	-	0	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	exon	7431436	7431513	.	-	.	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	intron	7431514	7431594	.	-	.	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	CDS	7431595	7431759	1	-	0	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	exon	7431595	7431759	.	-	.	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	intron	7431760	7431838	.	-	.	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	CDS	7431839	7432078	0.56	-	0	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	exon	7431839	7432078	.	-	.	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
Ledus.S1	AUGUSTUS	start_codon	7432076	7432078	.	-	0	transcript_id "Ledus.S1G073100.t1"; gene_id "Ledus.S1G073100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1502.t1 is derived from g8363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10607309	10610896	.	-	.	Ledus.S2G138400
Ledus.S2	AUGUSTUS	transcript	10607309	10610896	.	-	.	transcript_id "Ledus.S2G138400.t1"; gene_id "Ledus.S2G138400"
Ledus.S2	AUGUSTUS	stop_codon	10607306	10607308	.	-	0	transcript_id "Ledus.S2G138400.t1"; gene_id "Ledus.S2G138400"
Ledus.S2	AUGUSTUS	CDS	10607309	10610896	0.79	-	0	transcript_id "Ledus.S2G138400.t1"; gene_id "Ledus.S2G138400"
Ledus.S2	AUGUSTUS	exon	10607309	10610896	.	-	.	transcript_id "Ledus.S2G138400.t1"; gene_id "Ledus.S2G138400"
Ledus.S2	AUGUSTUS	start_codon	10610894	10610896	.	-	0	transcript_id "Ledus.S2G138400.t1"; gene_id "Ledus.S2G138400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6697.t1 is derived from g4140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33348639	33349835	.	+	.	Ledus.S1G411800
Ledus.S1	AUGUSTUS	transcript	33348639	33349835	.	+	.	transcript_id "Ledus.S1G411800.t1"; gene_id "Ledus.S1G411800"
Ledus.S1	AUGUSTUS	start_codon	33348639	33348641	.	+	0	transcript_id "Ledus.S1G411800.t1"; gene_id "Ledus.S1G411800"
Ledus.S1	AUGUSTUS	CDS	33348639	33349835	0.99	+	0	transcript_id "Ledus.S1G411800.t1"; gene_id "Ledus.S1G411800"
Ledus.S1	AUGUSTUS	exon	33348639	33349835	.	+	.	transcript_id "Ledus.S1G411800.t1"; gene_id "Ledus.S1G411800"
Ledus.S1	AUGUSTUS	stop_codon	33349836	33349838	.	+	0	transcript_id "Ledus.S1G411800.t1"; gene_id "Ledus.S1G411800"
# This transcript jg9825.t2 is derived from g10855.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9825.t3 is derived from g10855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9826.t1 is derived from g10856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10271563	10272860	.	-	.	Ledus.S3G130300
Ledus.S3	AUGUSTUS	transcript	10271563	10272860	.	-	.	transcript_id "Ledus.S3G130300.t1"; gene_id "Ledus.S3G130300"
Ledus.S3	AUGUSTUS	stop_codon	10271560	10271562	.	-	0	transcript_id "Ledus.S3G130300.t1"; gene_id "Ledus.S3G130300"
Ledus.S3	AUGUSTUS	CDS	10271563	10271801	0.57	-	2	transcript_id "Ledus.S3G130300.t1"; gene_id "Ledus.S3G130300"
Ledus.S3	AUGUSTUS	exon	10271563	10271801	.	-	.	transcript_id "Ledus.S3G130300.t1"; gene_id "Ledus.S3G130300"
Ledus.S3	AUGUSTUS	intron	10271802	10272367	.	-	.	transcript_id "Ledus.S3G130300.t1"; gene_id "Ledus.S3G130300"
Ledus.S3	AUGUSTUS	CDS	10272368	10272560	0.45	-	0	transcript_id "Ledus.S3G130300.t1"; gene_id "Ledus.S3G130300"
Ledus.S3	AUGUSTUS	exon	10272368	10272560	.	-	.	transcript_id "Ledus.S3G130300.t1"; gene_id "Ledus.S3G130300"
Ledus.S3	AUGUSTUS	intron	10272561	10272692	.	-	.	transcript_id "Ledus.S3G130300.t1"; gene_id "Ledus.S3G130300"
Ledus.S3	AUGUSTUS	CDS	10272693	10272860	0.28	-	0	transcript_id "Ledus.S3G130300.t1"; gene_id "Ledus.S3G130300"
Ledus.S3	AUGUSTUS	exon	10272693	10272860	.	-	.	transcript_id "Ledus.S3G130300.t1"; gene_id "Ledus.S3G130300"
Ledus.S3	AUGUSTUS	start_codon	10272858	10272860	.	-	0	transcript_id "Ledus.S3G130300.t1"; gene_id "Ledus.S3G130300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9279.t1 is derived from g10309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5757781	5759583	.	-	.	Ledus.S3G075600
Ledus.S3	AUGUSTUS	transcript	5757781	5759583	.	-	.	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	stop_codon	5757778	5757780	.	-	0	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	CDS	5757781	5758356	1	-	0	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	exon	5757781	5758356	.	-	.	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	intron	5758357	5758485	.	-	.	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	CDS	5758486	5758876	0.84	-	1	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	exon	5758486	5758876	.	-	.	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	intron	5758877	5759016	.	-	.	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	CDS	5759017	5759167	0.32	-	2	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	exon	5759017	5759167	.	-	.	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	intron	5759168	5759257	.	-	.	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	CDS	5759258	5759309	0.55	-	0	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	exon	5759258	5759309	.	-	.	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	intron	5759310	5759556	.	-	.	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	CDS	5759557	5759583	0.49	-	0	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	exon	5759557	5759583	.	-	.	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
Ledus.S3	AUGUSTUS	start_codon	5759581	5759583	.	-	0	transcript_id "Ledus.S3G075600.t1"; gene_id "Ledus.S3G075600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3069.t1 is derived from g504.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5667887	5669517	.	-	.	Ledus.S1G049000
Ledus.S1	AUGUSTUS	transcript	5667887	5669517	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	stop_codon	5667884	5667886	.	-	0	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	CDS	5667887	5667909	0.64	-	2	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	exon	5667887	5667909	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	intron	5667910	5668106	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	CDS	5668107	5668234	0.57	-	1	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	exon	5668107	5668234	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	intron	5668235	5668396	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	CDS	5668397	5668415	0.32	-	2	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	exon	5668397	5668415	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	intron	5668416	5668645	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	CDS	5668646	5668720	0.63	-	2	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	exon	5668646	5668720	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	intron	5668721	5668857	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	CDS	5668858	5668905	0.63	-	2	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	exon	5668858	5668905	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	intron	5668906	5669132	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	CDS	5669133	5669227	0.43	-	1	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	exon	5669133	5669227	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	intron	5669228	5669440	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	CDS	5669441	5669517	0.83	-	0	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	exon	5669441	5669517	.	-	.	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
Ledus.S1	AUGUSTUS	start_codon	5669515	5669517	.	-	0	transcript_id "Ledus.S1G049000.t1"; gene_id "Ledus.S1G049000"
# This transcript jg11520.t2 is derived from g5138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11521.t1 is derived from g5139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5047224	5050775	.	-	.	Ledus.S4G067700
Ledus.S4	AUGUSTUS	transcript	5047224	5050775	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	stop_codon	5047221	5047223	.	-	0	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5047224	5047445	0.99	-	0	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5047224	5047445	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	intron	5047446	5047530	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5047531	5047629	1	-	0	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5047531	5047629	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	intron	5047630	5047714	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5047715	5047799	1	-	1	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5047715	5047799	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	intron	5047800	5047922	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5047923	5047972	1	-	0	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5047923	5047972	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	intron	5047973	5048106	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5048107	5048183	1	-	2	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5048107	5048183	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	intron	5048184	5048324	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5048325	5048400	1	-	0	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5048325	5048400	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	intron	5048401	5048499	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5048500	5048754	0.91	-	0	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5048500	5048754	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	intron	5048755	5048861	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5048862	5048929	1	-	2	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5048862	5048929	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	intron	5048930	5049080	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5049081	5049357	1	-	0	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5049081	5049357	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	intron	5049358	5049505	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5049506	5049852	1	-	2	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5049506	5049852	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	intron	5049853	5049988	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5049989	5050259	1	-	0	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5049989	5050259	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	intron	5050260	5050441	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5050442	5050515	0.98	-	2	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5050442	5050515	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	intron	5050516	5050624	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	CDS	5050625	5050775	0.92	-	0	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	exon	5050625	5050775	.	-	.	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
Ledus.S4	AUGUSTUS	start_codon	5050773	5050775	.	-	0	transcript_id "Ledus.S4G067700.t1"; gene_id "Ledus.S4G067700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12335.t1 is derived from g5956.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11271817	11272077	.	+	.	Ledus.S4G149100
Ledus.S4	AUGUSTUS	transcript	11271817	11272077	.	+	.	transcript_id "Ledus.S4G149100.t1"; gene_id "Ledus.S4G149100"
Ledus.S4	AUGUSTUS	start_codon	11271817	11271819	.	+	0	transcript_id "Ledus.S4G149100.t1"; gene_id "Ledus.S4G149100"
Ledus.S4	AUGUSTUS	CDS	11271817	11272077	0.61	+	0	transcript_id "Ledus.S4G149100.t1"; gene_id "Ledus.S4G149100"
Ledus.S4	AUGUSTUS	exon	11271817	11272077	.	+	.	transcript_id "Ledus.S4G149100.t1"; gene_id "Ledus.S4G149100"
Ledus.S4	AUGUSTUS	stop_codon	11272078	11272080	.	+	0	transcript_id "Ledus.S4G149100.t1"; gene_id "Ledus.S4G149100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg587.t1 is derived from g7448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3480967	3481212	.	+	.	Ledus.S2G046900
Ledus.S2	AUGUSTUS	transcript	3480967	3481212	.	+	.	transcript_id "Ledus.S2G046900.t1"; gene_id "Ledus.S2G046900"
Ledus.S2	AUGUSTUS	start_codon	3480967	3480969	.	+	0	transcript_id "Ledus.S2G046900.t1"; gene_id "Ledus.S2G046900"
Ledus.S2	AUGUSTUS	CDS	3480967	3481212	0.47	+	0	transcript_id "Ledus.S2G046900.t1"; gene_id "Ledus.S2G046900"
Ledus.S2	AUGUSTUS	exon	3480967	3481212	.	+	.	transcript_id "Ledus.S2G046900.t1"; gene_id "Ledus.S2G046900"
Ledus.S2	AUGUSTUS	stop_codon	3481213	3481215	.	+	0	transcript_id "Ledus.S2G046900.t1"; gene_id "Ledus.S2G046900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2141.t1 is derived from g9004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15076836	15077135	.	-	.	Ledus.S2G202300
Ledus.S2	AUGUSTUS	transcript	15076836	15077135	.	-	.	transcript_id "Ledus.S2G202300.t1"; gene_id "Ledus.S2G202300"
Ledus.S2	AUGUSTUS	stop_codon	15076833	15076835	.	-	0	transcript_id "Ledus.S2G202300.t1"; gene_id "Ledus.S2G202300"
Ledus.S2	AUGUSTUS	CDS	15076836	15077135	0.99	-	0	transcript_id "Ledus.S2G202300.t1"; gene_id "Ledus.S2G202300"
Ledus.S2	AUGUSTUS	exon	15076836	15077135	.	-	.	transcript_id "Ledus.S2G202300.t1"; gene_id "Ledus.S2G202300"
Ledus.S2	AUGUSTUS	start_codon	15077133	15077135	.	-	0	transcript_id "Ledus.S2G202300.t1"; gene_id "Ledus.S2G202300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6549.t1 is derived from g3992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32258721	32262150	.	-	.	Ledus.S1G397000
Ledus.S1	AUGUSTUS	transcript	32258721	32262150	.	-	.	transcript_id "Ledus.S1G397000.t1"; gene_id "Ledus.S1G397000"
Ledus.S1	AUGUSTUS	stop_codon	32258718	32258720	.	-	0	transcript_id "Ledus.S1G397000.t1"; gene_id "Ledus.S1G397000"
Ledus.S1	AUGUSTUS	CDS	32258721	32261819	0.87	-	0	transcript_id "Ledus.S1G397000.t1"; gene_id "Ledus.S1G397000"
Ledus.S1	AUGUSTUS	exon	32258721	32261819	.	-	.	transcript_id "Ledus.S1G397000.t1"; gene_id "Ledus.S1G397000"
Ledus.S1	AUGUSTUS	intron	32261820	32261955	.	-	.	transcript_id "Ledus.S1G397000.t1"; gene_id "Ledus.S1G397000"
Ledus.S1	AUGUSTUS	CDS	32261956	32262150	0.96	-	0	transcript_id "Ledus.S1G397000.t1"; gene_id "Ledus.S1G397000"
Ledus.S1	AUGUSTUS	exon	32261956	32262150	.	-	.	transcript_id "Ledus.S1G397000.t1"; gene_id "Ledus.S1G397000"
Ledus.S1	AUGUSTUS	start_codon	32262148	32262150	.	-	0	transcript_id "Ledus.S1G397000.t1"; gene_id "Ledus.S1G397000"
# This transcript jg843.t1 is derived from g7703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5627488	5629245	.	-	.	Ledus.S2G072400
Ledus.S2	AUGUSTUS	transcript	5627488	5629245	.	-	.	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	stop_codon	5627485	5627487	.	-	0	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5627488	5627658	0.08	-	0	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5627488	5627658	.	-	.	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	intron	5627659	5627821	.	-	.	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5627822	5628323	0.38	-	1	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5627822	5628323	.	-	.	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	intron	5628324	5628431	.	-	.	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5628432	5628553	0.72	-	0	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5628432	5628553	.	-	.	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	intron	5628554	5628637	.	-	.	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5628638	5628864	0.45	-	2	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5628638	5628864	.	-	.	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	intron	5628865	5629016	.	-	.	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5629017	5629245	0.99	-	0	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5629017	5629245	.	-	.	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	start_codon	5629243	5629245	.	-	0	transcript_id "Ledus.S2G072400.t1"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	transcript	5627488	5629188	.	-	.	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	stop_codon	5627485	5627487	.	-	0	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5627488	5627658	0.11	-	0	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5627488	5627658	.	-	.	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	intron	5627659	5627821	.	-	.	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5627822	5628323	0.4	-	1	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5627822	5628323	.	-	.	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	intron	5628324	5628431	.	-	.	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5628432	5628553	0.7	-	0	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5628432	5628553	.	-	.	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	intron	5628554	5628637	.	-	.	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5628638	5628864	0.36	-	2	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5628638	5628864	.	-	.	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	intron	5628865	5629016	.	-	.	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5629017	5629188	0.79	-	0	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5629017	5629188	.	-	.	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	start_codon	5629186	5629188	.	-	0	transcript_id "Ledus.S2G072400.t2"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	transcript	5627488	5628583	.	-	.	transcript_id "Ledus.S2G072400.t3"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	stop_codon	5627485	5627487	.	-	0	transcript_id "Ledus.S2G072400.t3"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5627488	5627658	0.6	-	0	transcript_id "Ledus.S2G072400.t3"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5627488	5627658	.	-	.	transcript_id "Ledus.S2G072400.t3"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	intron	5627659	5627821	.	-	.	transcript_id "Ledus.S2G072400.t3"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5627822	5628323	0.25	-	1	transcript_id "Ledus.S2G072400.t3"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5627822	5628323	.	-	.	transcript_id "Ledus.S2G072400.t3"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	intron	5628324	5628431	.	-	.	transcript_id "Ledus.S2G072400.t3"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	CDS	5628432	5628583	0.41	-	0	transcript_id "Ledus.S2G072400.t3"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	exon	5628432	5628583	.	-	.	transcript_id "Ledus.S2G072400.t3"; gene_id "Ledus.S2G072400"
Ledus.S2	AUGUSTUS	start_codon	5628581	5628583	.	-	0	transcript_id "Ledus.S2G072400.t3"; gene_id "Ledus.S2G072400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5562.t1 is derived from g3001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25157614	25163397	.	-	.	Ledus.S1G298300
Ledus.S1	AUGUSTUS	transcript	25157614	25163397	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	stop_codon	25157611	25157613	.	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25157614	25157753	0.73	-	2	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25157614	25157753	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25157754	25157854	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25157855	25157940	1	-	1	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25157855	25157940	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25157941	25158022	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25158023	25158168	0.98	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25158023	25158168	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25158169	25158240	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25158241	25158603	0.68	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25158241	25158603	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25158604	25158720	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25158721	25158806	0.68	-	2	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25158721	25158806	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25158807	25158899	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25158900	25158998	1	-	2	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25158900	25158998	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25158999	25159081	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25159082	25159169	1	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25159082	25159169	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25159170	25159266	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25159267	25159324	1	-	1	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25159267	25159324	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25159325	25159407	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25159408	25159535	0.89	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25159408	25159535	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25159536	25159662	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25159663	25159725	0.99	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25159663	25159725	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25159726	25159820	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25159821	25159907	1	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25159821	25159907	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25159908	25160059	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25160060	25160128	1	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25160060	25160128	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25160129	25160206	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25160207	25160311	0.63	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25160207	25160311	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25160312	25160445	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25160446	25160537	1	-	2	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25160446	25160537	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25160538	25160677	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25160678	25160832	1	-	1	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25160678	25160832	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25160833	25160982	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25160983	25161118	1	-	2	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25160983	25161118	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25161119	25161231	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25161232	25161286	0.94	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25161232	25161286	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25161287	25161368	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25161369	25161481	0.96	-	2	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25161369	25161481	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25161482	25161589	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25161590	25161766	0.97	-	2	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25161590	25161766	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25161767	25161857	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25161858	25162020	1	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25161858	25162020	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25162021	25162169	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25162170	25162320	1	-	1	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25162170	25162320	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25162321	25162478	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25162479	25162560	1	-	2	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25162479	25162560	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25162561	25162647	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25162648	25162787	0.89	-	1	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25162648	25162787	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25162788	25162895	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25162896	25163134	1	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25162896	25163134	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25163135	25163217	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25163218	25163283	0.62	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25163218	25163283	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25163284	25163373	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25163374	25163397	0.55	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25163374	25163397	.	-	.	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	start_codon	25163395	25163397	.	-	0	transcript_id "Ledus.S1G298300.t1"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	transcript	25157614	25163397	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	stop_codon	25157611	25157613	.	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25157614	25157753	0.71	-	2	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25157614	25157753	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25157754	25157854	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25157855	25157940	1	-	1	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25157855	25157940	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25157941	25158022	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25158023	25158168	0.98	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25158023	25158168	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25158169	25158240	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25158241	25158603	0.57	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25158241	25158603	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25158604	25158720	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25158721	25158806	0.56	-	2	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25158721	25158806	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25158807	25158899	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25158900	25158998	1	-	2	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25158900	25158998	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25158999	25159081	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25159082	25159169	1	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25159082	25159169	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25159170	25159266	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25159267	25159324	1	-	1	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25159267	25159324	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25159325	25159407	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25159408	25159523	1	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25159408	25159523	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25159524	25159662	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25159663	25159725	1	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25159663	25159725	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25159726	25159820	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25159821	25159907	1	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25159821	25159907	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25159908	25160059	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25160060	25160128	1	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25160060	25160128	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25160129	25160206	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25160207	25160311	0.52	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25160207	25160311	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25160312	25160445	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25160446	25160537	1	-	2	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25160446	25160537	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25160538	25160677	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25160678	25160832	1	-	1	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25160678	25160832	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25160833	25160982	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25160983	25161118	1	-	2	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25160983	25161118	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25161119	25161231	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25161232	25161286	0.97	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25161232	25161286	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25161287	25161368	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25161369	25161481	1	-	2	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25161369	25161481	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25161482	25161589	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25161590	25161766	0.98	-	2	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25161590	25161766	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25161767	25161857	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25161858	25162020	1	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25161858	25162020	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25162021	25162169	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25162170	25162320	1	-	1	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25162170	25162320	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25162321	25162478	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25162479	25162560	1	-	2	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25162479	25162560	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25162561	25162647	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25162648	25162787	0.94	-	1	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25162648	25162787	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25162788	25162895	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25162896	25163134	1	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25162896	25163134	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25163135	25163217	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25163218	25163283	0.62	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25163218	25163283	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	intron	25163284	25163373	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	CDS	25163374	25163397	0.53	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	exon	25163374	25163397	.	-	.	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
Ledus.S1	AUGUSTUS	start_codon	25163395	25163397	.	-	0	transcript_id "Ledus.S1G298300.t2"; gene_id "Ledus.S1G298300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2709.t1 is derived from g142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2323240	2324565	.	-	.	Ledus.S1G013000
Ledus.S1	AUGUSTUS	transcript	2323240	2324565	.	-	.	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	stop_codon	2323237	2323239	.	-	0	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	CDS	2323240	2323297	0.97	-	1	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	exon	2323240	2323297	.	-	.	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	intron	2323298	2323454	.	-	.	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	CDS	2323455	2323532	0.97	-	1	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	exon	2323455	2323532	.	-	.	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	intron	2323533	2324096	.	-	.	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	CDS	2324097	2324167	0.69	-	0	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	exon	2324097	2324167	.	-	.	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	intron	2324168	2324246	.	-	.	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	CDS	2324247	2324322	0.87	-	1	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	exon	2324247	2324322	.	-	.	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	intron	2324323	2324521	.	-	.	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	CDS	2324522	2324565	0.83	-	0	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	exon	2324522	2324565	.	-	.	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
Ledus.S1	AUGUSTUS	start_codon	2324563	2324565	.	-	0	transcript_id "Ledus.S1G013000.t1"; gene_id "Ledus.S1G013000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12449.t1 is derived from g6070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12057159	12062168	.	-	.	Ledus.S4G160500
Ledus.S4	AUGUSTUS	transcript	12057159	12062168	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	stop_codon	12057156	12057158	.	-	0	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	CDS	12057159	12057338	0.92	-	0	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	exon	12057159	12057338	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	intron	12057339	12057511	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	CDS	12057512	12057577	1	-	0	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	exon	12057512	12057577	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	intron	12057578	12057766	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	CDS	12057767	12058502	1	-	1	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	exon	12057767	12058502	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	intron	12058503	12058705	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	CDS	12058706	12058924	0.76	-	1	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	exon	12058706	12058924	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	intron	12058925	12059030	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	CDS	12059031	12059333	0.94	-	1	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	exon	12059031	12059333	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	intron	12059334	12059493	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	CDS	12059494	12059652	1	-	1	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	exon	12059494	12059652	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	intron	12059653	12059800	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	CDS	12059801	12059886	1	-	0	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	exon	12059801	12059886	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	intron	12059887	12059986	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	CDS	12059987	12060064	1	-	0	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	exon	12059987	12060064	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	intron	12060065	12060249	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	CDS	12060250	12060357	1	-	0	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	exon	12060250	12060357	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	intron	12060358	12060525	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	CDS	12060526	12060735	1	-	0	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	exon	12060526	12060735	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	intron	12060736	12060872	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	CDS	12060873	12061094	1	-	0	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	exon	12060873	12061094	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	intron	12061095	12061979	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	CDS	12061980	12062168	1	-	0	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	exon	12061980	12062168	.	-	.	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
Ledus.S4	AUGUSTUS	start_codon	12062166	12062168	.	-	0	transcript_id "Ledus.S4G160500.t1"; gene_id "Ledus.S4G160500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2087.t1 is derived from g8950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14672510	14678625	.	+	.	Ledus.S2G196900
Ledus.S2	AUGUSTUS	transcript	14672510	14678625	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	start_codon	14672510	14672512	.	+	0	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	CDS	14672510	14673669	0.91	+	0	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	exon	14672510	14673669	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	intron	14673670	14673803	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	CDS	14673804	14673883	1	+	1	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	exon	14673804	14673883	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	intron	14673884	14674021	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	CDS	14674022	14674209	1	+	2	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	exon	14674022	14674209	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	intron	14674210	14674437	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	CDS	14674438	14675392	1	+	0	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	exon	14674438	14675392	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	intron	14675393	14675523	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	CDS	14675524	14675651	1	+	2	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	exon	14675524	14675651	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	intron	14675652	14676357	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	CDS	14676358	14676417	1	+	0	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	exon	14676358	14676417	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	intron	14676418	14676502	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	CDS	14676503	14676553	1	+	0	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	exon	14676503	14676553	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	intron	14676554	14676717	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	CDS	14676718	14676788	1	+	0	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	exon	14676718	14676788	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	intron	14676789	14676928	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	CDS	14676929	14677080	1	+	1	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	exon	14676929	14677080	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	intron	14677081	14677162	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	CDS	14677163	14678625	0.64	+	2	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	exon	14677163	14678625	.	+	.	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
Ledus.S2	AUGUSTUS	stop_codon	14678626	14678628	.	+	0	transcript_id "Ledus.S2G196900.t1"; gene_id "Ledus.S2G196900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9688.t1 is derived from g10718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9048645	9049004	.	+	.	Ledus.S3G116500
Ledus.S3	AUGUSTUS	transcript	9048645	9049004	.	+	.	transcript_id "Ledus.S3G116500.t1"; gene_id "Ledus.S3G116500"
Ledus.S3	AUGUSTUS	start_codon	9048645	9048647	.	+	0	transcript_id "Ledus.S3G116500.t1"; gene_id "Ledus.S3G116500"
Ledus.S3	AUGUSTUS	CDS	9048645	9049004	0.63	+	0	transcript_id "Ledus.S3G116500.t1"; gene_id "Ledus.S3G116500"
Ledus.S3	AUGUSTUS	exon	9048645	9049004	.	+	.	transcript_id "Ledus.S3G116500.t1"; gene_id "Ledus.S3G116500"
Ledus.S3	AUGUSTUS	stop_codon	9049005	9049007	.	+	0	transcript_id "Ledus.S3G116500.t1"; gene_id "Ledus.S3G116500"
# This transcript jg8589.t2 is derived from g9619.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8590.t1 is derived from g9620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	483451	485924	.	-	.	Ledus.S3G006700
Ledus.S3	AUGUSTUS	transcript	483451	485924	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	stop_codon	483448	483450	.	-	0	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	483451	483498	1	-	0	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	483451	483498	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	intron	483499	483574	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	483575	483633	1	-	2	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	483575	483633	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	intron	483634	483739	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	483740	483813	1	-	1	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	483740	483813	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	intron	483814	483969	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	483970	484040	1	-	0	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	483970	484040	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	intron	484041	484133	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	484134	484179	1	-	1	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	484134	484179	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	intron	484180	484273	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	484274	484362	1	-	0	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	484274	484362	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	intron	484363	484445	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	484446	484524	1	-	1	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	484446	484524	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	intron	484525	484690	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	484691	484818	1	-	0	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	484691	484818	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	intron	484819	484916	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	484917	485016	1	-	1	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	484917	485016	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	intron	485017	485196	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	485197	485314	1	-	2	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	485197	485314	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	intron	485315	485449	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	485450	485582	1	-	0	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	485450	485582	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	intron	485583	485663	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	485664	485747	1	-	0	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	485664	485747	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	intron	485748	485882	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	CDS	485883	485924	1	-	0	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	exon	485883	485924	.	-	.	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
Ledus.S3	AUGUSTUS	start_codon	485922	485924	.	-	0	transcript_id "Ledus.S3G006700.t1"; gene_id "Ledus.S3G006700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg882.t1 is derived from g7743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5956737	5958309	.	-	.	Ledus.S2G076400
Ledus.S2	AUGUSTUS	transcript	5956737	5958309	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	stop_codon	5956734	5956736	.	-	0	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	CDS	5956737	5956781	0.93	-	0	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	exon	5956737	5956781	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	intron	5956782	5956858	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	CDS	5956859	5956987	0.96	-	0	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	exon	5956859	5956987	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	intron	5956988	5957148	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	CDS	5957149	5957262	1	-	0	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	exon	5957149	5957262	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	intron	5957263	5957393	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	CDS	5957394	5957458	0.99	-	2	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	exon	5957394	5957458	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	intron	5957459	5957553	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	CDS	5957554	5957593	1	-	0	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	exon	5957554	5957593	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	intron	5957594	5957739	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	CDS	5957740	5957802	1	-	0	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	exon	5957740	5957802	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	intron	5957803	5957881	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	CDS	5957882	5958152	1	-	1	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	exon	5957882	5958152	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	intron	5958153	5958235	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	CDS	5958236	5958309	1	-	0	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	exon	5958236	5958309	.	-	.	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
Ledus.S2	AUGUSTUS	start_codon	5958307	5958309	.	-	0	transcript_id "Ledus.S2G076400.t1"; gene_id "Ledus.S2G076400"
# This transcript jg12281.t2 is derived from g5901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12282.t1 is derived from g5902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10845524	10846339	.	+	.	Ledus.S4G143800
Ledus.S4	AUGUSTUS	transcript	10845524	10846339	.	+	.	transcript_id "Ledus.S4G143800.t1"; gene_id "Ledus.S4G143800"
Ledus.S4	AUGUSTUS	start_codon	10845524	10845526	.	+	0	transcript_id "Ledus.S4G143800.t1"; gene_id "Ledus.S4G143800"
Ledus.S4	AUGUSTUS	CDS	10845524	10845898	0.68	+	0	transcript_id "Ledus.S4G143800.t1"; gene_id "Ledus.S4G143800"
Ledus.S4	AUGUSTUS	exon	10845524	10845898	.	+	.	transcript_id "Ledus.S4G143800.t1"; gene_id "Ledus.S4G143800"
Ledus.S4	AUGUSTUS	intron	10845899	10846045	.	+	.	transcript_id "Ledus.S4G143800.t1"; gene_id "Ledus.S4G143800"
Ledus.S4	AUGUSTUS	CDS	10846046	10846339	0.92	+	0	transcript_id "Ledus.S4G143800.t1"; gene_id "Ledus.S4G143800"
Ledus.S4	AUGUSTUS	exon	10846046	10846339	.	+	.	transcript_id "Ledus.S4G143800.t1"; gene_id "Ledus.S4G143800"
Ledus.S4	AUGUSTUS	stop_codon	10846340	10846342	.	+	0	transcript_id "Ledus.S4G143800.t1"; gene_id "Ledus.S4G143800"
# This transcript jg1016.t2 is derived from g7877.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1017.t1 is derived from g7878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6782501	6783478	.	+	.	Ledus.S2G089900
Ledus.S2	AUGUSTUS	transcript	6782501	6783478	.	+	.	transcript_id "Ledus.S2G089900.t1"; gene_id "Ledus.S2G089900"
Ledus.S2	AUGUSTUS	start_codon	6782501	6782503	.	+	0	transcript_id "Ledus.S2G089900.t1"; gene_id "Ledus.S2G089900"
Ledus.S2	AUGUSTUS	CDS	6782501	6783478	0.69	+	0	transcript_id "Ledus.S2G089900.t1"; gene_id "Ledus.S2G089900"
Ledus.S2	AUGUSTUS	exon	6782501	6783478	.	+	.	transcript_id "Ledus.S2G089900.t1"; gene_id "Ledus.S2G089900"
Ledus.S2	AUGUSTUS	stop_codon	6783479	6783481	.	+	0	transcript_id "Ledus.S2G089900.t1"; gene_id "Ledus.S2G089900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3784.t1 is derived from g1220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12076084	12076383	.	-	.	Ledus.S1G120500
Ledus.S1	AUGUSTUS	transcript	12076084	12076383	.	-	.	transcript_id "Ledus.S1G120500.t1"; gene_id "Ledus.S1G120500"
Ledus.S1	AUGUSTUS	stop_codon	12076081	12076083	.	-	0	transcript_id "Ledus.S1G120500.t1"; gene_id "Ledus.S1G120500"
Ledus.S1	AUGUSTUS	CDS	12076084	12076383	1	-	0	transcript_id "Ledus.S1G120500.t1"; gene_id "Ledus.S1G120500"
Ledus.S1	AUGUSTUS	exon	12076084	12076383	.	-	.	transcript_id "Ledus.S1G120500.t1"; gene_id "Ledus.S1G120500"
Ledus.S1	AUGUSTUS	start_codon	12076381	12076383	.	-	0	transcript_id "Ledus.S1G120500.t1"; gene_id "Ledus.S1G120500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2173.t1 is derived from g9036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15723119	15723635	.	+	.	Ledus.S2G205500
Ledus.S2	AUGUSTUS	transcript	15723119	15723635	.	+	.	transcript_id "Ledus.S2G205500.t1"; gene_id "Ledus.S2G205500"
Ledus.S2	AUGUSTUS	start_codon	15723119	15723121	.	+	0	transcript_id "Ledus.S2G205500.t1"; gene_id "Ledus.S2G205500"
Ledus.S2	AUGUSTUS	CDS	15723119	15723376	0.87	+	0	transcript_id "Ledus.S2G205500.t1"; gene_id "Ledus.S2G205500"
Ledus.S2	AUGUSTUS	exon	15723119	15723376	.	+	.	transcript_id "Ledus.S2G205500.t1"; gene_id "Ledus.S2G205500"
Ledus.S2	AUGUSTUS	intron	15723377	15723470	.	+	.	transcript_id "Ledus.S2G205500.t1"; gene_id "Ledus.S2G205500"
Ledus.S2	AUGUSTUS	CDS	15723471	15723635	0.73	+	0	transcript_id "Ledus.S2G205500.t1"; gene_id "Ledus.S2G205500"
Ledus.S2	AUGUSTUS	exon	15723471	15723635	.	+	.	transcript_id "Ledus.S2G205500.t1"; gene_id "Ledus.S2G205500"
Ledus.S2	AUGUSTUS	stop_codon	15723636	15723638	.	+	0	transcript_id "Ledus.S2G205500.t1"; gene_id "Ledus.S2G205500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2798.t1 is derived from g232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3839146	3841203	.	-	.	Ledus.S1G021900
Ledus.S1	AUGUSTUS	transcript	3839146	3841203	.	-	.	transcript_id "Ledus.S1G021900.t1"; gene_id "Ledus.S1G021900"
Ledus.S1	AUGUSTUS	stop_codon	3839143	3839145	.	-	0	transcript_id "Ledus.S1G021900.t1"; gene_id "Ledus.S1G021900"
Ledus.S1	AUGUSTUS	CDS	3839146	3841203	0.89	-	0	transcript_id "Ledus.S1G021900.t1"; gene_id "Ledus.S1G021900"
Ledus.S1	AUGUSTUS	exon	3839146	3841203	.	-	.	transcript_id "Ledus.S1G021900.t1"; gene_id "Ledus.S1G021900"
Ledus.S1	AUGUSTUS	start_codon	3841201	3841203	.	-	0	transcript_id "Ledus.S1G021900.t1"; gene_id "Ledus.S1G021900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3290.t1 is derived from g725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7298888	7305966	.	-	.	Ledus.S1G071100
Ledus.S1	AUGUSTUS	transcript	7298888	7305594	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	stop_codon	7298885	7298887	.	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7298888	7298893	0.99	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7298888	7298893	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7298894	7299103	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7299104	7299324	0.98	-	2	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7299104	7299324	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7299325	7299415	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7299416	7299566	1	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7299416	7299566	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7299567	7299654	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7299655	7299948	0.98	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7299655	7299948	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7299949	7300067	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7300068	7300360	0.98	-	2	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7300068	7300360	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7300361	7300493	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7300494	7301889	1	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7300494	7301889	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7301890	7301971	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7301972	7302129	1	-	2	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7301972	7302129	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7302130	7302311	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7302312	7302397	1	-	1	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7302312	7302397	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7302398	7302607	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7302608	7302675	1	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7302608	7302675	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7302676	7302805	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7302806	7302849	1	-	2	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7302806	7302849	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7302850	7302931	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7302932	7303004	1	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7302932	7303004	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7303005	7303170	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7303171	7303250	1	-	2	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7303171	7303250	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7303251	7303364	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7303365	7303458	0.72	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7303365	7303458	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7303459	7303621	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7303622	7303792	1	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7303622	7303792	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7303793	7303938	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7303939	7304001	1	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7303939	7304001	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7304002	7304198	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7304199	7304265	1	-	1	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7304199	7304265	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7304266	7304407	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7304408	7304496	1	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7304408	7304496	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7304497	7304598	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7304599	7304653	1	-	1	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7304599	7304653	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7304654	7304880	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7304881	7304981	1	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7304881	7304981	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7304982	7305267	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7305268	7305356	1	-	2	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7305268	7305356	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7305357	7305482	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7305483	7305594	0.98	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7305483	7305594	.	-	.	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	start_codon	7305592	7305594	.	-	0	transcript_id "Ledus.S1G071100.t1"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	transcript	7302301	7305966	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	stop_codon	7302298	7302300	.	-	0	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7302301	7302397	0.88	-	1	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7302301	7302397	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7302398	7302607	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7302608	7302675	1	-	0	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7302608	7302675	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7302676	7302805	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7302806	7302849	1	-	2	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7302806	7302849	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7302850	7302931	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7302932	7303004	1	-	0	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7302932	7303004	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7303005	7303170	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7303171	7303250	1	-	2	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7303171	7303250	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7303251	7303364	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7303365	7303458	0.65	-	0	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7303365	7303458	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7303459	7303621	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7303622	7303792	1	-	0	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7303622	7303792	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7303793	7303938	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7303939	7304001	1	-	0	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7303939	7304001	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7304002	7304198	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7304199	7304265	1	-	1	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7304199	7304265	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7304266	7304407	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7304408	7304496	1	-	0	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7304408	7304496	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7304497	7304598	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7304599	7304653	1	-	1	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7304599	7304653	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7304654	7304880	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7304881	7304981	1	-	0	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7304881	7304981	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7304982	7305267	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7305268	7305356	1	-	2	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7305268	7305356	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7305357	7305633	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7305634	7305689	0.9	-	1	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7305634	7305689	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7305690	7305765	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7305766	7305820	1	-	2	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7305766	7305820	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	intron	7305821	7305911	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	CDS	7305912	7305966	1	-	0	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	exon	7305912	7305966	.	-	.	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
Ledus.S1	AUGUSTUS	start_codon	7305964	7305966	.	-	0	transcript_id "Ledus.S1G071100.t2"; gene_id "Ledus.S1G071100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9965.t1 is derived from g10995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11594868	11596782	.	-	.	Ledus.S3G144200
Ledus.S3	AUGUSTUS	transcript	11594868	11596782	.	-	.	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	stop_codon	11594865	11594867	.	-	0	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	CDS	11594868	11595071	0.98	-	0	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	exon	11594868	11595071	.	-	.	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	intron	11595072	11595194	.	-	.	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	CDS	11595195	11595402	0.99	-	1	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	exon	11595195	11595402	.	-	.	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	intron	11595403	11595508	.	-	.	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	CDS	11595509	11595578	1	-	2	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	exon	11595509	11595578	.	-	.	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	intron	11595579	11595659	.	-	.	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	CDS	11595660	11595729	1	-	0	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	exon	11595660	11595729	.	-	.	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	intron	11595730	11595822	.	-	.	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	CDS	11595823	11595900	1	-	0	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	exon	11595823	11595900	.	-	.	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	intron	11595901	11596125	.	-	.	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	CDS	11596126	11596782	0.34	-	0	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	exon	11596126	11596782	.	-	.	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
Ledus.S3	AUGUSTUS	start_codon	11596780	11596782	.	-	0	transcript_id "Ledus.S3G144200.t1"; gene_id "Ledus.S3G144200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12434.t1 is derived from g6055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12000832	12003072	.	-	.	Ledus.S4G159000
Ledus.S4	AUGUSTUS	transcript	12000832	12003072	.	-	.	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	stop_codon	12000829	12000831	.	-	0	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	CDS	12000832	12000844	0.53	-	1	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	exon	12000832	12000844	.	-	.	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	intron	12000845	12000959	.	-	.	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	CDS	12000960	12001007	0.54	-	1	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	exon	12000960	12001007	.	-	.	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	intron	12001008	12001127	.	-	.	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	CDS	12001128	12001185	0.51	-	2	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	exon	12001128	12001185	.	-	.	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	intron	12001186	12001402	.	-	.	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	CDS	12001403	12001532	1	-	0	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	exon	12001403	12001532	.	-	.	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	intron	12001533	12001630	.	-	.	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	CDS	12001631	12001948	1	-	0	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	exon	12001631	12001948	.	-	.	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	intron	12001949	12002037	.	-	.	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	CDS	12002038	12003072	1	-	0	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	exon	12002038	12003072	.	-	.	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
Ledus.S4	AUGUSTUS	start_codon	12003070	12003072	.	-	0	transcript_id "Ledus.S4G159000.t1"; gene_id "Ledus.S4G159000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8061.t1 is derived from g12732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9008910	9010032	.	-	.	Ledus.S5G083900
Ledus.S5	AUGUSTUS	transcript	9008910	9010032	.	-	.	transcript_id "Ledus.S5G083900.t1"; gene_id "Ledus.S5G083900"
Ledus.S5	AUGUSTUS	stop_codon	9008907	9008909	.	-	0	transcript_id "Ledus.S5G083900.t1"; gene_id "Ledus.S5G083900"
Ledus.S5	AUGUSTUS	CDS	9008910	9008917	0.38	-	2	transcript_id "Ledus.S5G083900.t1"; gene_id "Ledus.S5G083900"
Ledus.S5	AUGUSTUS	exon	9008910	9008917	.	-	.	transcript_id "Ledus.S5G083900.t1"; gene_id "Ledus.S5G083900"
Ledus.S5	AUGUSTUS	intron	9008918	9009056	.	-	.	transcript_id "Ledus.S5G083900.t1"; gene_id "Ledus.S5G083900"
Ledus.S5	AUGUSTUS	CDS	9009057	9009153	0.24	-	0	transcript_id "Ledus.S5G083900.t1"; gene_id "Ledus.S5G083900"
Ledus.S5	AUGUSTUS	exon	9009057	9009153	.	-	.	transcript_id "Ledus.S5G083900.t1"; gene_id "Ledus.S5G083900"
Ledus.S5	AUGUSTUS	intron	9009154	9009558	.	-	.	transcript_id "Ledus.S5G083900.t1"; gene_id "Ledus.S5G083900"
Ledus.S5	AUGUSTUS	CDS	9009559	9010032	0.56	-	0	transcript_id "Ledus.S5G083900.t1"; gene_id "Ledus.S5G083900"
Ledus.S5	AUGUSTUS	exon	9009559	9010032	.	-	.	transcript_id "Ledus.S5G083900.t1"; gene_id "Ledus.S5G083900"
Ledus.S5	AUGUSTUS	start_codon	9010030	9010032	.	-	0	transcript_id "Ledus.S5G083900.t1"; gene_id "Ledus.S5G083900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5709.t1 is derived from g3148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26075509	26075742	.	-	.	Ledus.S1G313000
Ledus.S1	AUGUSTUS	transcript	26075509	26075742	.	-	.	transcript_id "Ledus.S1G313000.t1"; gene_id "Ledus.S1G313000"
Ledus.S1	AUGUSTUS	stop_codon	26075506	26075508	.	-	0	transcript_id "Ledus.S1G313000.t1"; gene_id "Ledus.S1G313000"
Ledus.S1	AUGUSTUS	CDS	26075509	26075742	0.75	-	0	transcript_id "Ledus.S1G313000.t1"; gene_id "Ledus.S1G313000"
Ledus.S1	AUGUSTUS	exon	26075509	26075742	.	-	.	transcript_id "Ledus.S1G313000.t1"; gene_id "Ledus.S1G313000"
Ledus.S1	AUGUSTUS	start_codon	26075740	26075742	.	-	0	transcript_id "Ledus.S1G313000.t1"; gene_id "Ledus.S1G313000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2385.t1 is derived from g9248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17837043	17838576	.	-	.	Ledus.S2G226700
Ledus.S2	AUGUSTUS	transcript	17837043	17838576	.	-	.	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	stop_codon	17837040	17837042	.	-	0	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	CDS	17837043	17837117	0.93	-	0	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	exon	17837043	17837117	.	-	.	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	intron	17837118	17837485	.	-	.	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	CDS	17837486	17837593	1	-	0	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	exon	17837486	17837593	.	-	.	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	intron	17837594	17837693	.	-	.	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	CDS	17837694	17837786	1	-	0	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	exon	17837694	17837786	.	-	.	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	intron	17837787	17837926	.	-	.	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	CDS	17837927	17837999	1	-	1	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	exon	17837927	17837999	.	-	.	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	intron	17838000	17838451	.	-	.	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	CDS	17838452	17838576	0.86	-	0	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	exon	17838452	17838576	.	-	.	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
Ledus.S2	AUGUSTUS	start_codon	17838574	17838576	.	-	0	transcript_id "Ledus.S2G226700.t1"; gene_id "Ledus.S2G226700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9925.t1 is derived from g10955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11237347	11240760	.	-	.	Ledus.S3G140200
Ledus.S3	AUGUSTUS	transcript	11237347	11240760	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	stop_codon	11237344	11237346	.	-	0	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	CDS	11237347	11237433	0.97	-	0	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	exon	11237347	11237433	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	intron	11237434	11237576	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	CDS	11237577	11237673	1	-	1	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	exon	11237577	11237673	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	intron	11237674	11237773	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	CDS	11237774	11237836	1	-	1	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	exon	11237774	11237836	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	intron	11237837	11237934	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	CDS	11237935	11238088	1	-	2	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	exon	11237935	11238088	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	intron	11238089	11238233	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	CDS	11238234	11238417	1	-	0	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	exon	11238234	11238417	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	intron	11238418	11238626	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	CDS	11238627	11238928	1	-	2	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	exon	11238627	11238928	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	intron	11238929	11239157	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	CDS	11239158	11239329	1	-	0	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	exon	11239158	11239329	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	intron	11239330	11239439	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	CDS	11239440	11239682	0.99	-	0	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	exon	11239440	11239682	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	intron	11239683	11239805	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	CDS	11239806	11240029	1	-	2	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	exon	11239806	11240029	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	intron	11240030	11240623	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	CDS	11240624	11240663	1	-	0	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	exon	11240624	11240663	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	intron	11240664	11240757	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	CDS	11240758	11240760	1	-	0	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	exon	11240758	11240760	.	-	.	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
Ledus.S3	AUGUSTUS	start_codon	11240758	11240760	.	-	0	transcript_id "Ledus.S3G140200.t1"; gene_id "Ledus.S3G140200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6685.t1 is derived from g4128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33226196	33226951	.	+	.	Ledus.S1G410600
Ledus.S1	AUGUSTUS	transcript	33226196	33226951	.	+	.	transcript_id "Ledus.S1G410600.t1"; gene_id "Ledus.S1G410600"
Ledus.S1	AUGUSTUS	start_codon	33226196	33226198	.	+	0	transcript_id "Ledus.S1G410600.t1"; gene_id "Ledus.S1G410600"
Ledus.S1	AUGUSTUS	CDS	33226196	33226951	0.4	+	0	transcript_id "Ledus.S1G410600.t1"; gene_id "Ledus.S1G410600"
Ledus.S1	AUGUSTUS	exon	33226196	33226951	.	+	.	transcript_id "Ledus.S1G410600.t1"; gene_id "Ledus.S1G410600"
Ledus.S1	AUGUSTUS	stop_codon	33226952	33226954	.	+	0	transcript_id "Ledus.S1G410600.t1"; gene_id "Ledus.S1G410600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3460.t1 is derived from g895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8492160	8495240	.	-	.	Ledus.S1G088100
Ledus.S1	AUGUSTUS	transcript	8492160	8495240	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	stop_codon	8492157	8492159	.	-	0	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8492160	8492323	1	-	2	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8492160	8492323	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	intron	8492324	8492407	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8492408	8492468	1	-	0	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8492408	8492468	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	intron	8492469	8492560	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8492561	8492628	1	-	2	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8492561	8492628	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	intron	8492629	8492786	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8492787	8492859	1	-	0	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8492787	8492859	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	intron	8492860	8492946	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8492947	8493048	1	-	0	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8492947	8493048	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	intron	8493049	8493145	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8493146	8493265	1	-	0	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8493146	8493265	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	intron	8493266	8493462	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8493463	8493581	1	-	2	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8493463	8493581	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	intron	8493582	8493682	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8493683	8493740	1	-	0	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8493683	8493740	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	intron	8493741	8493873	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8493874	8493988	0.95	-	1	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8493874	8493988	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	intron	8493989	8494084	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8494085	8494140	0.82	-	0	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8494085	8494140	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	intron	8494141	8494239	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8494240	8494372	0.95	-	1	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8494240	8494372	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	intron	8494373	8494455	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8494456	8494522	0.91	-	2	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8494456	8494522	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	intron	8494523	8494717	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	CDS	8494718	8495240	0.83	-	0	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	exon	8494718	8495240	.	-	.	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
Ledus.S1	AUGUSTUS	start_codon	8495238	8495240	.	-	0	transcript_id "Ledus.S1G088100.t1"; gene_id "Ledus.S1G088100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11906.t1 is derived from g5525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7683194	7683667	.	+	.	Ledus.S4G106200
Ledus.S4	AUGUSTUS	transcript	7683194	7683667	.	+	.	transcript_id "Ledus.S4G106200.t1"; gene_id "Ledus.S4G106200"
Ledus.S4	AUGUSTUS	start_codon	7683194	7683196	.	+	0	transcript_id "Ledus.S4G106200.t1"; gene_id "Ledus.S4G106200"
Ledus.S4	AUGUSTUS	CDS	7683194	7683667	0.89	+	0	transcript_id "Ledus.S4G106200.t1"; gene_id "Ledus.S4G106200"
Ledus.S4	AUGUSTUS	exon	7683194	7683667	.	+	.	transcript_id "Ledus.S4G106200.t1"; gene_id "Ledus.S4G106200"
Ledus.S4	AUGUSTUS	stop_codon	7683668	7683670	.	+	0	transcript_id "Ledus.S4G106200.t1"; gene_id "Ledus.S4G106200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9762.t1 is derived from g10792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9648240	9653752	.	-	.	Ledus.S3G123900
Ledus.S3	AUGUSTUS	transcript	9648240	9653752	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	stop_codon	9648237	9648239	.	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9648240	9648393	0.99	-	1	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9648240	9648393	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9648394	9648488	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9648489	9648634	1	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9648489	9648634	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9648635	9648737	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9648738	9648837	1	-	1	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9648738	9648837	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9648838	9648952	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9648953	9649056	0.84	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9648953	9649056	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9649057	9649220	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9649221	9649718	0.92	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9649221	9649718	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9649719	9649807	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9649808	9650059	0.98	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9649808	9650059	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9650060	9650175	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9650176	9650440	0.9	-	1	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9650176	9650440	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9650441	9650515	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9650516	9650584	1	-	1	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9650516	9650584	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9650585	9650855	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9650856	9651046	1	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9650856	9651046	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9651047	9651225	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9651226	9651396	1	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9651226	9651396	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9651397	9651613	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9651614	9651916	0.96	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9651614	9651916	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9651917	9652099	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9652100	9652157	1	-	1	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9652100	9652157	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9652158	9652246	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9652247	9652326	1	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9652247	9652326	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9652327	9652443	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9652444	9652527	1	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9652444	9652527	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9652528	9652622	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9652623	9652700	1	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9652623	9652700	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9652701	9652797	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9652798	9652881	1	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9652798	9652881	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9652882	9652983	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9652984	9653049	1	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9652984	9653049	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9653050	9653143	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9653144	9653216	1	-	1	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9653144	9653216	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9653217	9653330	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9653331	9653554	1	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9653331	9653554	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	intron	9653555	9653662	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	CDS	9653663	9653752	1	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	exon	9653663	9653752	.	-	.	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
Ledus.S3	AUGUSTUS	start_codon	9653750	9653752	.	-	0	transcript_id "Ledus.S3G123900.t1"; gene_id "Ledus.S3G123900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7369.t1 is derived from g12040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1623995	1625989	.	-	.	Ledus.S5G014700
Ledus.S5	AUGUSTUS	transcript	1623995	1625989	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	stop_codon	1623992	1623994	.	-	0	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	CDS	1623995	1624059	0.83	-	2	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	exon	1623995	1624059	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	intron	1624060	1624170	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	CDS	1624171	1624257	0.57	-	2	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	exon	1624171	1624257	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	intron	1624258	1624380	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	CDS	1624381	1624501	0.77	-	0	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	exon	1624381	1624501	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	intron	1624502	1624584	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	CDS	1624585	1624665	1	-	0	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	exon	1624585	1624665	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	intron	1624666	1624745	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	CDS	1624746	1624946	1	-	0	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	exon	1624746	1624946	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	intron	1624947	1625106	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	CDS	1625107	1625298	1	-	0	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	exon	1625107	1625298	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	intron	1625299	1625447	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	CDS	1625448	1625660	1	-	0	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	exon	1625448	1625660	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	intron	1625661	1625884	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	CDS	1625885	1625989	0.81	-	0	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	exon	1625885	1625989	.	-	.	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
Ledus.S5	AUGUSTUS	start_codon	1625987	1625989	.	-	0	transcript_id "Ledus.S5G014700.t1"; gene_id "Ledus.S5G014700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg144.t1 is derived from g7005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	264524	265297	.	-	.	Ledus.S2G002600
Ledus.S2	AUGUSTUS	transcript	264524	265297	.	-	.	transcript_id "Ledus.S2G002600.t1"; gene_id "Ledus.S2G002600"
Ledus.S2	AUGUSTUS	stop_codon	264521	264523	.	-	0	transcript_id "Ledus.S2G002600.t1"; gene_id "Ledus.S2G002600"
Ledus.S2	AUGUSTUS	CDS	264524	265297	0.87	-	0	transcript_id "Ledus.S2G002600.t1"; gene_id "Ledus.S2G002600"
Ledus.S2	AUGUSTUS	exon	264524	265297	.	-	.	transcript_id "Ledus.S2G002600.t1"; gene_id "Ledus.S2G002600"
Ledus.S2	AUGUSTUS	start_codon	265295	265297	.	-	0	transcript_id "Ledus.S2G002600.t1"; gene_id "Ledus.S2G002600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10508.t1 is derived from g11538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15659493	15661490	.	+	.	Ledus.S3G198500
Ledus.S3	AUGUSTUS	transcript	15659493	15661490	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	start_codon	15659493	15659495	.	+	0	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	CDS	15659493	15659554	0.99	+	0	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	exon	15659493	15659554	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	intron	15659555	15659671	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	CDS	15659672	15659781	1	+	1	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	exon	15659672	15659781	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	intron	15659782	15659924	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	CDS	15659925	15660043	1	+	2	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	exon	15659925	15660043	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	intron	15660044	15660229	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	CDS	15660230	15660327	1	+	0	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	exon	15660230	15660327	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	intron	15660328	15660423	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	CDS	15660424	15660511	1	+	1	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	exon	15660424	15660511	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	intron	15660512	15660710	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	CDS	15660711	15660860	1	+	0	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	exon	15660711	15660860	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	intron	15660861	15660944	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	CDS	15660945	15661059	1	+	0	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	exon	15660945	15661059	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	intron	15661060	15661184	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	CDS	15661185	15661348	1	+	2	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	exon	15661185	15661348	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	intron	15661349	15661445	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	CDS	15661446	15661490	0.98	+	0	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	exon	15661446	15661490	.	+	.	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
Ledus.S3	AUGUSTUS	stop_codon	15661491	15661493	.	+	0	transcript_id "Ledus.S3G198500.t1"; gene_id "Ledus.S3G198500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3564.t1 is derived from g1000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9615615	9616853	.	-	.	Ledus.S1G098500
Ledus.S1	AUGUSTUS	transcript	9615615	9616853	.	-	.	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	stop_codon	9615612	9615614	.	-	0	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	CDS	9615615	9615985	0.94	-	2	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	exon	9615615	9615985	.	-	.	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	intron	9615986	9616062	.	-	.	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	CDS	9616063	9616159	1	-	0	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	exon	9616063	9616159	.	-	.	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	intron	9616160	9616245	.	-	.	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	CDS	9616246	9616337	1	-	2	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	exon	9616246	9616337	.	-	.	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	intron	9616338	9616434	.	-	.	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	CDS	9616435	9616555	0.98	-	0	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	exon	9616435	9616555	.	-	.	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	intron	9616556	9616664	.	-	.	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	CDS	9616665	9616853	0.92	-	0	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	exon	9616665	9616853	.	-	.	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
Ledus.S1	AUGUSTUS	start_codon	9616851	9616853	.	-	0	transcript_id "Ledus.S1G098500.t1"; gene_id "Ledus.S1G098500"
# This transcript jg12866.t2 is derived from g4439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12866.t3 is derived from g4439.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12867.t1 is derived from g4440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	121437	125957	.	+	.	Ledus.C10G001000
Ledus.C10	AUGUSTUS	transcript	121437	125957	.	+	.	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	start_codon	121437	121439	.	+	0	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	CDS	121437	125213	0.94	+	0	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	exon	121437	125213	.	+	.	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	intron	125214	125317	.	+	.	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	CDS	125318	125467	1	+	0	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	exon	125318	125467	.	+	.	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	intron	125468	125559	.	+	.	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	CDS	125560	125745	0.95	+	0	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	exon	125560	125745	.	+	.	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	intron	125746	125861	.	+	.	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	CDS	125862	125957	0.81	+	0	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	exon	125862	125957	.	+	.	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
Ledus.C10	AUGUSTUS	stop_codon	125958	125960	.	+	0	transcript_id "Ledus.C10G001000.t1"; gene_id "Ledus.C10G001000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2348.t1 is derived from g9211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17381620	17386093	.	-	.	Ledus.S2G223000
Ledus.S2	AUGUSTUS	transcript	17381620	17386093	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	stop_codon	17381617	17381619	.	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17381620	17381875	0.7	-	1	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17381620	17381875	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17381876	17381998	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17381999	17382042	1	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17381999	17382042	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17382043	17382143	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17382144	17382461	0.99	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17382144	17382461	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17382462	17382613	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17382614	17382709	1	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17382614	17382709	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17382710	17382842	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17382843	17382977	1	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17382843	17382977	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17382978	17383114	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17383115	17383291	1	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17383115	17383291	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17383292	17383465	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17383466	17383588	1	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17383466	17383588	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17383589	17383811	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17383812	17383889	1	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17383812	17383889	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17383890	17384014	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17384015	17384168	1	-	1	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17384015	17384168	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17384169	17384309	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17384310	17384442	1	-	2	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17384310	17384442	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17384443	17384531	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17384532	17384604	1	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17384532	17384604	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17384605	17384797	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17384798	17385079	0.61	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17384798	17385079	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17385080	17385166	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17385167	17385259	0.93	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17385167	17385259	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17385260	17385439	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17385440	17385838	1	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17385440	17385838	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	intron	17385839	17385916	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	CDS	17385917	17386093	0.97	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	exon	17385917	17386093	.	-	.	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
Ledus.S2	AUGUSTUS	start_codon	17386091	17386093	.	-	0	transcript_id "Ledus.S2G223000.t1"; gene_id "Ledus.S2G223000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8987.t1 is derived from g10017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3687694	3708705	.	+	.	Ledus.S3G046400
Ledus.S3	AUGUSTUS	transcript	3687694	3708705	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	start_codon	3687694	3687696	.	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3687694	3687801	0.61	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3687694	3687801	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3687802	3687884	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3687885	3688031	0.97	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3687885	3688031	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3688032	3688134	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3688135	3688242	1	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3688135	3688242	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3688243	3688318	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3688319	3688384	0.88	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	exon	3688491	3688673	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	CDS	3688747	3688824	0.86	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3688747	3688824	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	CDS	3688902	3689042	0.89	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3688902	3689042	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	CDS	3689246	3689409	0.97	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	intron	3689410	3689539	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3689540	3689705	0.98	+	1	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	CDS	3689801	3689975	1	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3689801	3689975	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	CDS	3690064	3690158	1	+	2	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3690064	3690158	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	CDS	3690248	3690322	0.72	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3690248	3690322	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	CDS	3690482	3690598	0.63	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3690482	3690598	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	CDS	3690799	3690909	0.95	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	CDS	3690988	3691173	0.94	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	CDS	3691263	3691448	0.96	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
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Ledus.S3	AUGUSTUS	CDS	3699640	3699726	0.99	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3699640	3699726	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3699727	3699844	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3699845	3700024	1	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3699845	3700024	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3700025	3700107	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3700108	3700250	1	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3700108	3700250	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3700251	3700331	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3700332	3700536	0.99	+	1	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3700332	3700536	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3700537	3700631	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3700632	3700883	0.98	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3700632	3700883	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3700884	3700964	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3700965	3701234	0.97	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3700965	3701234	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3701235	3701320	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3701321	3701626	0.97	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3701321	3701626	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3701627	3701700	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3701701	3701856	1	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3701701	3701856	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3701857	3701947	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3701948	3702289	0.99	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3701948	3702289	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3702290	3702372	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3702373	3702446	1	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3702373	3702446	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3702447	3702541	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3702542	3702767	0.87	+	1	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3702542	3702767	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3702768	3702859	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3702860	3702991	1	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3702860	3702991	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3702992	3703078	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3703079	3703294	1	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3703079	3703294	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3703295	3703489	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3703490	3704080	0.63	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3703490	3704080	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3704081	3704183	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3704184	3704420	0.82	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3704184	3704420	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3704421	3704513	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3704514	3704648	1	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3704514	3704648	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3704649	3704728	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3704729	3704833	0.98	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3704729	3704833	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3704834	3704941	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3704942	3705076	0.97	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3704942	3705076	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3705077	3705187	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3705188	3705793	0.95	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3705188	3705793	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3705794	3705893	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3705894	3706418	1	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3705894	3706418	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3706419	3706514	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3706515	3706621	0.92	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3706515	3706621	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3706622	3706731	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3706732	3707260	0.75	+	1	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3706732	3707260	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3707261	3707346	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3707347	3707526	0.97	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3707347	3707526	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3707527	3707632	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3707633	3707788	0.4	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3707633	3707788	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3707789	3708296	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3708297	3708416	0.97	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3708297	3708416	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	intron	3708417	3708483	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	CDS	3708484	3708705	0.9	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	exon	3708484	3708705	.	+	.	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
Ledus.S3	AUGUSTUS	stop_codon	3708706	3708708	.	+	0	transcript_id "Ledus.S3G046400.t1"; gene_id "Ledus.S3G046400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8324.t1 is derived from g12996.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10757981	10758190	.	+	.	Ledus.S5G110200
Ledus.S5	AUGUSTUS	transcript	10757981	10758190	.	+	.	transcript_id "Ledus.S5G110200.t1"; gene_id "Ledus.S5G110200"
Ledus.S5	AUGUSTUS	start_codon	10757981	10757983	.	+	0	transcript_id "Ledus.S5G110200.t1"; gene_id "Ledus.S5G110200"
Ledus.S5	AUGUSTUS	CDS	10757981	10758190	0.8	+	0	transcript_id "Ledus.S5G110200.t1"; gene_id "Ledus.S5G110200"
Ledus.S5	AUGUSTUS	exon	10757981	10758190	.	+	.	transcript_id "Ledus.S5G110200.t1"; gene_id "Ledus.S5G110200"
Ledus.S5	AUGUSTUS	stop_codon	10758191	10758193	.	+	0	transcript_id "Ledus.S5G110200.t1"; gene_id "Ledus.S5G110200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11876.t1 is derived from g5495.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7480941	7484139	.	-	.	Ledus.S4G103200
Ledus.S4	AUGUSTUS	transcript	7480941	7484139	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	stop_codon	7480938	7480940	.	-	0	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7480941	7480971	0.99	-	1	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7480941	7480971	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7480972	7481094	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7481095	7481180	1	-	0	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7481095	7481180	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7481181	7481276	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7481277	7481363	1	-	0	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7481277	7481363	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7481364	7481453	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7481454	7481495	1	-	0	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7481454	7481495	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7481496	7481670	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7481671	7481781	1	-	0	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7481671	7481781	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7481782	7481900	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7481901	7482000	1	-	1	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7481901	7482000	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7482001	7482088	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7482089	7482171	1	-	0	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7482089	7482171	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7482172	7482325	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7482326	7482391	1	-	0	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7482326	7482391	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7482392	7482547	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7482548	7482625	1	-	0	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7482548	7482625	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7482626	7482763	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7482764	7482902	1	-	1	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7482764	7482902	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7482903	7483122	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7483123	7483228	1	-	2	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7483123	7483228	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7483229	7483348	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7483349	7483522	1	-	2	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7483349	7483522	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7483523	7483708	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7483709	7483807	1	-	2	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7483709	7483807	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	intron	7483808	7484108	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	CDS	7484109	7484139	1	-	0	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	exon	7484109	7484139	.	-	.	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
Ledus.S4	AUGUSTUS	start_codon	7484137	7484139	.	-	0	transcript_id "Ledus.S4G103200.t1"; gene_id "Ledus.S4G103200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6347.t1 is derived from g3790.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30689164	30689592	.	-	.	Ledus.S1G376800
Ledus.S1	AUGUSTUS	transcript	30689164	30689592	.	-	.	transcript_id "Ledus.S1G376800.t1"; gene_id "Ledus.S1G376800"
Ledus.S1	AUGUSTUS	stop_codon	30689161	30689163	.	-	0	transcript_id "Ledus.S1G376800.t1"; gene_id "Ledus.S1G376800"
Ledus.S1	AUGUSTUS	CDS	30689164	30689322	1	-	0	transcript_id "Ledus.S1G376800.t1"; gene_id "Ledus.S1G376800"
Ledus.S1	AUGUSTUS	exon	30689164	30689322	.	-	.	transcript_id "Ledus.S1G376800.t1"; gene_id "Ledus.S1G376800"
Ledus.S1	AUGUSTUS	intron	30689323	30689481	.	-	.	transcript_id "Ledus.S1G376800.t1"; gene_id "Ledus.S1G376800"
Ledus.S1	AUGUSTUS	CDS	30689482	30689592	0.42	-	0	transcript_id "Ledus.S1G376800.t1"; gene_id "Ledus.S1G376800"
Ledus.S1	AUGUSTUS	exon	30689482	30689592	.	-	.	transcript_id "Ledus.S1G376800.t1"; gene_id "Ledus.S1G376800"
Ledus.S1	AUGUSTUS	start_codon	30689590	30689592	.	-	0	transcript_id "Ledus.S1G376800.t1"; gene_id "Ledus.S1G376800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5947.t1 is derived from g3390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28005822	28006393	.	+	.	Ledus.S1G336800
Ledus.S1	AUGUSTUS	transcript	28005822	28006393	.	+	.	transcript_id "Ledus.S1G336800.t1"; gene_id "Ledus.S1G336800"
Ledus.S1	AUGUSTUS	start_codon	28005822	28005824	.	+	0	transcript_id "Ledus.S1G336800.t1"; gene_id "Ledus.S1G336800"
Ledus.S1	AUGUSTUS	CDS	28005822	28006287	0.45	+	0	transcript_id "Ledus.S1G336800.t1"; gene_id "Ledus.S1G336800"
Ledus.S1	AUGUSTUS	exon	28005822	28006287	.	+	.	transcript_id "Ledus.S1G336800.t1"; gene_id "Ledus.S1G336800"
Ledus.S1	AUGUSTUS	intron	28006288	28006379	.	+	.	transcript_id "Ledus.S1G336800.t1"; gene_id "Ledus.S1G336800"
Ledus.S1	AUGUSTUS	CDS	28006380	28006393	0.99	+	2	transcript_id "Ledus.S1G336800.t1"; gene_id "Ledus.S1G336800"
Ledus.S1	AUGUSTUS	exon	28006380	28006393	.	+	.	transcript_id "Ledus.S1G336800.t1"; gene_id "Ledus.S1G336800"
Ledus.S1	AUGUSTUS	stop_codon	28006394	28006396	.	+	0	transcript_id "Ledus.S1G336800.t1"; gene_id "Ledus.S1G336800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7272.t1 is derived from g11943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	667259	675966	.	+	.	Ledus.S5G005000
Ledus.S5	AUGUSTUS	transcript	667259	675966	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	start_codon	667259	667261	.	+	0	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	667259	667292	0.57	+	0	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	667259	667292	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	667293	667421	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	667422	668391	1	+	2	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	667422	668391	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	668392	668514	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	668515	668656	1	+	1	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	668515	668656	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	668657	669032	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	669033	671804	1	+	0	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	669033	671804	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	671805	672011	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	672012	672105	1	+	0	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	672012	672105	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	672106	672216	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	672217	672704	0.97	+	2	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	672217	672704	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	672705	672885	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	672886	673782	0.99	+	0	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	672886	673782	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	673783	673926	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	673927	674001	1	+	0	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	673927	674001	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	674002	674485	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	674486	674651	0.75	+	0	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	674486	674651	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	674652	674798	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	674799	674893	1	+	2	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	674799	674893	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	674894	674982	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	674983	675100	1	+	0	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	674983	675100	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	675101	675209	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	675210	675342	1	+	2	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	675210	675342	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	675343	675427	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	675428	675647	1	+	1	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	675428	675647	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	intron	675648	675738	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	CDS	675739	675966	1	+	0	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	exon	675739	675966	.	+	.	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
Ledus.S5	AUGUSTUS	stop_codon	675967	675969	.	+	0	transcript_id "Ledus.S5G005000.t1"; gene_id "Ledus.S5G005000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4270.t1 is derived from g1706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15888242	15889808	.	+	.	Ledus.S1G169100
Ledus.S1	AUGUSTUS	transcript	15888242	15889808	.	+	.	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	start_codon	15888242	15888244	.	+	0	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	CDS	15888242	15888434	1	+	0	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	exon	15888242	15888434	.	+	.	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	intron	15888435	15888564	.	+	.	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	CDS	15888565	15888907	0.51	+	2	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	exon	15888565	15888907	.	+	.	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	intron	15888908	15889020	.	+	.	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	CDS	15889021	15889283	0.44	+	1	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	exon	15889021	15889283	.	+	.	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	intron	15889284	15889518	.	+	.	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	CDS	15889519	15889808	0.31	+	2	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	exon	15889519	15889808	.	+	.	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
Ledus.S1	AUGUSTUS	stop_codon	15889809	15889811	.	+	0	transcript_id "Ledus.S1G169100.t1"; gene_id "Ledus.S1G169100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12229.t1 is derived from g5849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10506414	10507198	.	+	.	Ledus.S4G138500
Ledus.S4	AUGUSTUS	transcript	10506414	10507198	.	+	.	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	start_codon	10506414	10506416	.	+	0	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	CDS	10506414	10506429	1	+	0	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	exon	10506414	10506429	.	+	.	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	intron	10506430	10506520	.	+	.	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	CDS	10506521	10506626	1	+	2	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	exon	10506521	10506626	.	+	.	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	intron	10506627	10506703	.	+	.	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	CDS	10506704	10506788	1	+	1	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	exon	10506704	10506788	.	+	.	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	intron	10506789	10506871	.	+	.	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	CDS	10506872	10506922	0.63	+	0	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	exon	10506872	10506922	.	+	.	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	intron	10506923	10507019	.	+	.	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	CDS	10507020	10507040	0.96	+	0	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	exon	10507020	10507040	.	+	.	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	intron	10507041	10507135	.	+	.	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	CDS	10507136	10507198	0.98	+	0	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	exon	10507136	10507198	.	+	.	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
Ledus.S4	AUGUSTUS	stop_codon	10507199	10507201	.	+	0	transcript_id "Ledus.S4G138500.t1"; gene_id "Ledus.S4G138500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2954.t1 is derived from g389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4869307	4870220	.	-	.	Ledus.S1G037500
Ledus.S1	AUGUSTUS	transcript	4869307	4870220	.	-	.	transcript_id "Ledus.S1G037500.t1"; gene_id "Ledus.S1G037500"
Ledus.S1	AUGUSTUS	stop_codon	4869304	4869306	.	-	0	transcript_id "Ledus.S1G037500.t1"; gene_id "Ledus.S1G037500"
Ledus.S1	AUGUSTUS	CDS	4869307	4869841	0.71	-	1	transcript_id "Ledus.S1G037500.t1"; gene_id "Ledus.S1G037500"
Ledus.S1	AUGUSTUS	exon	4869307	4869841	.	-	.	transcript_id "Ledus.S1G037500.t1"; gene_id "Ledus.S1G037500"
Ledus.S1	AUGUSTUS	intron	4869842	4869968	.	-	.	transcript_id "Ledus.S1G037500.t1"; gene_id "Ledus.S1G037500"
Ledus.S1	AUGUSTUS	CDS	4869969	4870075	0.71	-	0	transcript_id "Ledus.S1G037500.t1"; gene_id "Ledus.S1G037500"
Ledus.S1	AUGUSTUS	exon	4869969	4870075	.	-	.	transcript_id "Ledus.S1G037500.t1"; gene_id "Ledus.S1G037500"
Ledus.S1	AUGUSTUS	intron	4870076	4870160	.	-	.	transcript_id "Ledus.S1G037500.t1"; gene_id "Ledus.S1G037500"
Ledus.S1	AUGUSTUS	CDS	4870161	4870220	0.86	-	0	transcript_id "Ledus.S1G037500.t1"; gene_id "Ledus.S1G037500"
Ledus.S1	AUGUSTUS	exon	4870161	4870220	.	-	.	transcript_id "Ledus.S1G037500.t1"; gene_id "Ledus.S1G037500"
Ledus.S1	AUGUSTUS	start_codon	4870218	4870220	.	-	0	transcript_id "Ledus.S1G037500.t1"; gene_id "Ledus.S1G037500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4618.t1 is derived from g2055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18308943	18311014	.	-	.	Ledus.S1G203900
Ledus.S1	AUGUSTUS	transcript	18308943	18311014	.	-	.	transcript_id "Ledus.S1G203900.t1"; gene_id "Ledus.S1G203900"
Ledus.S1	AUGUSTUS	stop_codon	18308940	18308942	.	-	0	transcript_id "Ledus.S1G203900.t1"; gene_id "Ledus.S1G203900"
Ledus.S1	AUGUSTUS	CDS	18308943	18310783	1	-	2	transcript_id "Ledus.S1G203900.t1"; gene_id "Ledus.S1G203900"
Ledus.S1	AUGUSTUS	exon	18308943	18310783	.	-	.	transcript_id "Ledus.S1G203900.t1"; gene_id "Ledus.S1G203900"
Ledus.S1	AUGUSTUS	intron	18310784	18310923	.	-	.	transcript_id "Ledus.S1G203900.t1"; gene_id "Ledus.S1G203900"
Ledus.S1	AUGUSTUS	CDS	18310924	18311014	0.53	-	0	transcript_id "Ledus.S1G203900.t1"; gene_id "Ledus.S1G203900"
Ledus.S1	AUGUSTUS	exon	18310924	18311014	.	-	.	transcript_id "Ledus.S1G203900.t1"; gene_id "Ledus.S1G203900"
Ledus.S1	AUGUSTUS	start_codon	18311012	18311014	.	-	0	transcript_id "Ledus.S1G203900.t1"; gene_id "Ledus.S1G203900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11303.t1 is derived from g4921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3473848	3474948	.	+	.	Ledus.S4G045900
Ledus.S4	AUGUSTUS	transcript	3473848	3474948	.	+	.	transcript_id "Ledus.S4G045900.t1"; gene_id "Ledus.S4G045900"
Ledus.S4	AUGUSTUS	start_codon	3473848	3473850	.	+	0	transcript_id "Ledus.S4G045900.t1"; gene_id "Ledus.S4G045900"
Ledus.S4	AUGUSTUS	CDS	3473848	3474948	1	+	0	transcript_id "Ledus.S4G045900.t1"; gene_id "Ledus.S4G045900"
Ledus.S4	AUGUSTUS	exon	3473848	3474948	.	+	.	transcript_id "Ledus.S4G045900.t1"; gene_id "Ledus.S4G045900"
Ledus.S4	AUGUSTUS	stop_codon	3474949	3474951	.	+	0	transcript_id "Ledus.S4G045900.t1"; gene_id "Ledus.S4G045900"
Ledus.S4	AUGUSTUS	transcript	3474271	3474948	.	+	.	transcript_id "Ledus.S4G045900.t2"; gene_id "Ledus.S4G045900"
Ledus.S4	AUGUSTUS	start_codon	3474271	3474273	.	+	0	transcript_id "Ledus.S4G045900.t2"; gene_id "Ledus.S4G045900"
Ledus.S4	AUGUSTUS	CDS	3474271	3474948	0.85	+	0	transcript_id "Ledus.S4G045900.t2"; gene_id "Ledus.S4G045900"
Ledus.S4	AUGUSTUS	exon	3474271	3474948	.	+	.	transcript_id "Ledus.S4G045900.t2"; gene_id "Ledus.S4G045900"
Ledus.S4	AUGUSTUS	stop_codon	3474949	3474951	.	+	0	transcript_id "Ledus.S4G045900.t2"; gene_id "Ledus.S4G045900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4860.t1 is derived from g2298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20420425	20422222	.	+	.	Ledus.S1G228100
Ledus.S1	AUGUSTUS	transcript	20420425	20422222	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	start_codon	20420425	20420427	.	+	0	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20420425	20420511	1	+	0	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20420425	20420511	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20420512	20420583	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20420584	20420692	0.98	+	0	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20420584	20420692	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20420693	20420775	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20420776	20420823	0.98	+	2	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20420776	20420823	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20420824	20420911	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20420912	20421097	0.99	+	2	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20420912	20421097	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20421098	20421234	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20421235	20421331	0.94	+	2	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20421235	20421331	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20421332	20421410	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20421411	20421483	1	+	1	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20421411	20421483	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20421484	20421575	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20421576	20421677	1	+	0	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20421576	20421677	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20421678	20421769	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20421770	20422019	1	+	0	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20421770	20422019	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20422020	20422091	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20422092	20422222	0.86	+	2	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20422092	20422222	.	+	.	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	stop_codon	20422223	20422225	.	+	0	transcript_id "Ledus.S1G228100.t1"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	transcript	20420425	20422222	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	start_codon	20420425	20420427	.	+	0	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20420425	20420511	0.99	+	0	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20420425	20420511	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20420512	20420583	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20420584	20420692	0.99	+	0	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20420584	20420692	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20420693	20420775	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20420776	20420823	0.99	+	2	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20420776	20420823	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20420824	20420911	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20420912	20421097	1	+	2	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20420912	20421097	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20421098	20421234	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20421235	20421331	0.88	+	2	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20421235	20421331	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20421332	20421410	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20421411	20421483	1	+	1	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20421411	20421483	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20421484	20421575	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20421576	20421683	1	+	0	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20421576	20421683	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20421684	20421769	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20421770	20422019	1	+	0	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20421770	20422019	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	intron	20422020	20422091	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	CDS	20422092	20422222	0.85	+	2	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	exon	20422092	20422222	.	+	.	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
Ledus.S1	AUGUSTUS	stop_codon	20422223	20422225	.	+	0	transcript_id "Ledus.S1G228100.t2"; gene_id "Ledus.S1G228100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6248.t1 is derived from g3691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29896036	29898820	.	-	.	Ledus.S1G366900
Ledus.S1	AUGUSTUS	transcript	29896036	29898820	.	-	.	transcript_id "Ledus.S1G366900.t1"; gene_id "Ledus.S1G366900"
Ledus.S1	AUGUSTUS	stop_codon	29896033	29896035	.	-	0	transcript_id "Ledus.S1G366900.t1"; gene_id "Ledus.S1G366900"
Ledus.S1	AUGUSTUS	CDS	29896036	29897209	0.56	-	1	transcript_id "Ledus.S1G366900.t1"; gene_id "Ledus.S1G366900"
Ledus.S1	AUGUSTUS	exon	29896036	29897209	.	-	.	transcript_id "Ledus.S1G366900.t1"; gene_id "Ledus.S1G366900"
Ledus.S1	AUGUSTUS	intron	29897210	29897320	.	-	.	transcript_id "Ledus.S1G366900.t1"; gene_id "Ledus.S1G366900"
Ledus.S1	AUGUSTUS	CDS	29897321	29897445	0.48	-	0	transcript_id "Ledus.S1G366900.t1"; gene_id "Ledus.S1G366900"
Ledus.S1	AUGUSTUS	exon	29897321	29897445	.	-	.	transcript_id "Ledus.S1G366900.t1"; gene_id "Ledus.S1G366900"
Ledus.S1	AUGUSTUS	intron	29897446	29897647	.	-	.	transcript_id "Ledus.S1G366900.t1"; gene_id "Ledus.S1G366900"
Ledus.S1	AUGUSTUS	CDS	29897648	29898820	0.88	-	0	transcript_id "Ledus.S1G366900.t1"; gene_id "Ledus.S1G366900"
Ledus.S1	AUGUSTUS	exon	29897648	29898820	.	-	.	transcript_id "Ledus.S1G366900.t1"; gene_id "Ledus.S1G366900"
Ledus.S1	AUGUSTUS	start_codon	29898818	29898820	.	-	0	transcript_id "Ledus.S1G366900.t1"; gene_id "Ledus.S1G366900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3826.t1 is derived from g1262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12769116	12771778	.	-	.	Ledus.S1G124700
Ledus.S1	AUGUSTUS	transcript	12769116	12771778	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	stop_codon	12769113	12769115	.	-	0	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	CDS	12769116	12769194	1	-	1	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	exon	12769116	12769194	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	intron	12769195	12769345	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	CDS	12769346	12769413	1	-	0	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	exon	12769346	12769413	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	intron	12769414	12769545	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	CDS	12769546	12769632	1	-	0	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	exon	12769546	12769632	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	intron	12769633	12769754	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	CDS	12769755	12769856	1	-	0	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	exon	12769755	12769856	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	intron	12769857	12770109	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	CDS	12770110	12770205	1	-	0	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	exon	12770110	12770205	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	intron	12770206	12770351	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	CDS	12770352	12770396	1	-	0	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	exon	12770352	12770396	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	intron	12770397	12770515	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	CDS	12770516	12770602	1	-	0	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	exon	12770516	12770602	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	intron	12770603	12770752	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	CDS	12770753	12770875	1	-	0	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	exon	12770753	12770875	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	intron	12770876	12771016	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	CDS	12771017	12771116	1	-	1	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	exon	12771017	12771116	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	intron	12771117	12771224	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	CDS	12771225	12771310	1	-	0	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	exon	12771225	12771310	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	intron	12771311	12771619	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	CDS	12771620	12771778	0.87	-	0	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	exon	12771620	12771778	.	-	.	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
Ledus.S1	AUGUSTUS	start_codon	12771776	12771778	.	-	0	transcript_id "Ledus.S1G124700.t1"; gene_id "Ledus.S1G124700"
# This transcript jg75.t2 is derived from g9488.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg76.t1 is derived from g9489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	262513	264292	.	-	.	Ledus.C8G003600
Ledus.C8	AUGUSTUS	transcript	262513	264292	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	stop_codon	262510	262512	.	-	0	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	CDS	262513	262590	1	-	0	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	exon	262513	262590	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	intron	262591	262682	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	CDS	262683	262763	1	-	0	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	exon	262683	262763	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	intron	262764	262855	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	CDS	262856	262903	1	-	0	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	exon	262856	262903	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	intron	262904	262993	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	CDS	262994	263153	1	-	1	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	exon	262994	263153	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	intron	263154	263255	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	CDS	263256	263407	1	-	0	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	exon	263256	263407	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	intron	263408	263503	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	CDS	263504	263583	0.98	-	2	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	exon	263504	263583	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	intron	263584	263692	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	CDS	263693	263765	1	-	0	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	exon	263693	263765	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	intron	263766	263888	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	CDS	263889	263938	1	-	2	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	exon	263889	263938	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	intron	263939	264147	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	CDS	264148	264292	1	-	0	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	exon	264148	264292	.	-	.	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
Ledus.C8	AUGUSTUS	start_codon	264290	264292	.	-	0	transcript_id "Ledus.C8G003600.t1"; gene_id "Ledus.C8G003600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6504.t1 is derived from g3947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31740738	31741169	.	-	.	Ledus.S1G392500
Ledus.S1	AUGUSTUS	transcript	31740738	31741169	.	-	.	transcript_id "Ledus.S1G392500.t1"; gene_id "Ledus.S1G392500"
Ledus.S1	AUGUSTUS	stop_codon	31740735	31740737	.	-	0	transcript_id "Ledus.S1G392500.t1"; gene_id "Ledus.S1G392500"
Ledus.S1	AUGUSTUS	CDS	31740738	31741169	0.61	-	0	transcript_id "Ledus.S1G392500.t1"; gene_id "Ledus.S1G392500"
Ledus.S1	AUGUSTUS	exon	31740738	31741169	.	-	.	transcript_id "Ledus.S1G392500.t1"; gene_id "Ledus.S1G392500"
Ledus.S1	AUGUSTUS	start_codon	31741167	31741169	.	-	0	transcript_id "Ledus.S1G392500.t1"; gene_id "Ledus.S1G392500"
# This transcript jg9899.t2 is derived from g10929.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9899.t3 is derived from g10929.t5 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9899.t4 is derived from g10929.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9900.t1 is derived from g10930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11026891	11029511	.	+	.	Ledus.S3G137700
Ledus.S3	AUGUSTUS	transcript	11026891	11029511	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	start_codon	11026891	11026893	.	+	0	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	CDS	11026891	11026975	1	+	0	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	exon	11026891	11026975	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	intron	11026976	11027056	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	CDS	11027057	11027169	1	+	2	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	exon	11027057	11027169	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	intron	11027170	11027245	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	CDS	11027246	11027275	1	+	0	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	exon	11027246	11027275	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	intron	11027276	11027361	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	CDS	11027362	11027507	1	+	0	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	exon	11027362	11027507	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	intron	11027508	11027623	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	CDS	11027624	11027815	1	+	1	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	exon	11027624	11027815	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	intron	11027816	11028137	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	CDS	11028138	11028201	0.99	+	1	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	exon	11028138	11028201	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	intron	11028202	11028307	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	CDS	11028308	11028415	0.99	+	0	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	exon	11028308	11028415	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	intron	11028416	11028551	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	CDS	11028552	11028705	1	+	0	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	exon	11028552	11028705	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	intron	11028706	11028836	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	CDS	11028837	11028926	1	+	2	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	exon	11028837	11028926	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	intron	11028927	11029027	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	CDS	11029028	11029083	1	+	2	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	exon	11029028	11029083	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	intron	11029084	11029200	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	CDS	11029201	11029279	1	+	0	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	exon	11029201	11029279	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	intron	11029280	11029401	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	CDS	11029402	11029511	1	+	2	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	exon	11029402	11029511	.	+	.	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
Ledus.S3	AUGUSTUS	stop_codon	11029512	11029514	.	+	0	transcript_id "Ledus.S3G137700.t1"; gene_id "Ledus.S3G137700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5114.t1 is derived from g2553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21779393	21780280	.	+	.	Ledus.S1G253500
Ledus.S1	AUGUSTUS	transcript	21779393	21780280	.	+	.	transcript_id "Ledus.S1G253500.t1"; gene_id "Ledus.S1G253500"
Ledus.S1	AUGUSTUS	start_codon	21779393	21779395	.	+	0	transcript_id "Ledus.S1G253500.t1"; gene_id "Ledus.S1G253500"
Ledus.S1	AUGUSTUS	CDS	21779393	21780280	0.72	+	0	transcript_id "Ledus.S1G253500.t1"; gene_id "Ledus.S1G253500"
Ledus.S1	AUGUSTUS	exon	21779393	21780280	.	+	.	transcript_id "Ledus.S1G253500.t1"; gene_id "Ledus.S1G253500"
Ledus.S1	AUGUSTUS	stop_codon	21780281	21780283	.	+	0	transcript_id "Ledus.S1G253500.t1"; gene_id "Ledus.S1G253500"
# This transcript jg1871.t2 is derived from g8734.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1872.t1 is derived from g8735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13110938	13111572	.	-	.	Ledus.S2G175400
Ledus.S2	AUGUSTUS	transcript	13110938	13111572	.	-	.	transcript_id "Ledus.S2G175400.t1"; gene_id "Ledus.S2G175400"
Ledus.S2	AUGUSTUS	stop_codon	13110935	13110937	.	-	0	transcript_id "Ledus.S2G175400.t1"; gene_id "Ledus.S2G175400"
Ledus.S2	AUGUSTUS	CDS	13110938	13111223	0.64	-	1	transcript_id "Ledus.S2G175400.t1"; gene_id "Ledus.S2G175400"
Ledus.S2	AUGUSTUS	exon	13110938	13111223	.	-	.	transcript_id "Ledus.S2G175400.t1"; gene_id "Ledus.S2G175400"
Ledus.S2	AUGUSTUS	intron	13111224	13111327	.	-	.	transcript_id "Ledus.S2G175400.t1"; gene_id "Ledus.S2G175400"
Ledus.S2	AUGUSTUS	CDS	13111328	13111572	0.54	-	0	transcript_id "Ledus.S2G175400.t1"; gene_id "Ledus.S2G175400"
Ledus.S2	AUGUSTUS	exon	13111328	13111572	.	-	.	transcript_id "Ledus.S2G175400.t1"; gene_id "Ledus.S2G175400"
Ledus.S2	AUGUSTUS	start_codon	13111570	13111572	.	-	0	transcript_id "Ledus.S2G175400.t1"; gene_id "Ledus.S2G175400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8570.t1 is derived from g9600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	223563	225522	.	-	.	Ledus.S3G004700
Ledus.S3	AUGUSTUS	transcript	223563	225522	.	-	.	transcript_id "Ledus.S3G004700.t1"; gene_id "Ledus.S3G004700"
Ledus.S3	AUGUSTUS	stop_codon	223560	223562	.	-	0	transcript_id "Ledus.S3G004700.t1"; gene_id "Ledus.S3G004700"
Ledus.S3	AUGUSTUS	CDS	223563	224663	0.75	-	0	transcript_id "Ledus.S3G004700.t1"; gene_id "Ledus.S3G004700"
Ledus.S3	AUGUSTUS	exon	223563	224663	.	-	.	transcript_id "Ledus.S3G004700.t1"; gene_id "Ledus.S3G004700"
Ledus.S3	AUGUSTUS	intron	224664	224738	.	-	.	transcript_id "Ledus.S3G004700.t1"; gene_id "Ledus.S3G004700"
Ledus.S3	AUGUSTUS	CDS	224739	224903	0.76	-	0	transcript_id "Ledus.S3G004700.t1"; gene_id "Ledus.S3G004700"
Ledus.S3	AUGUSTUS	exon	224739	224903	.	-	.	transcript_id "Ledus.S3G004700.t1"; gene_id "Ledus.S3G004700"
Ledus.S3	AUGUSTUS	intron	224904	225012	.	-	.	transcript_id "Ledus.S3G004700.t1"; gene_id "Ledus.S3G004700"
Ledus.S3	AUGUSTUS	CDS	225013	225522	0.82	-	0	transcript_id "Ledus.S3G004700.t1"; gene_id "Ledus.S3G004700"
Ledus.S3	AUGUSTUS	exon	225013	225522	.	-	.	transcript_id "Ledus.S3G004700.t1"; gene_id "Ledus.S3G004700"
Ledus.S3	AUGUSTUS	start_codon	225520	225522	.	-	0	transcript_id "Ledus.S3G004700.t1"; gene_id "Ledus.S3G004700"
# This transcript jg11402.t2 is derived from g5020.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11403.t1 is derived from g5021.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4017997	4018743	.	+	.	Ledus.S4G055900
Ledus.S4	AUGUSTUS	transcript	4017997	4018743	.	+	.	transcript_id "Ledus.S4G055900.t1"; gene_id "Ledus.S4G055900"
Ledus.S4	AUGUSTUS	start_codon	4017997	4017999	.	+	0	transcript_id "Ledus.S4G055900.t1"; gene_id "Ledus.S4G055900"
Ledus.S4	AUGUSTUS	CDS	4017997	4018743	0.89	+	0	transcript_id "Ledus.S4G055900.t1"; gene_id "Ledus.S4G055900"
Ledus.S4	AUGUSTUS	exon	4017997	4018743	.	+	.	transcript_id "Ledus.S4G055900.t1"; gene_id "Ledus.S4G055900"
Ledus.S4	AUGUSTUS	stop_codon	4018744	4018746	.	+	0	transcript_id "Ledus.S4G055900.t1"; gene_id "Ledus.S4G055900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6351.t1 is derived from g3794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30697781	30699326	.	-	.	Ledus.S1G377200
Ledus.S1	AUGUSTUS	transcript	30697781	30699326	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	stop_codon	30697778	30697780	.	-	0	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	CDS	30697781	30697869	0.81	-	2	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	exon	30697781	30697869	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	intron	30697870	30697971	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	CDS	30697972	30698107	0.81	-	0	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	exon	30697972	30698107	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	intron	30698108	30698232	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	CDS	30698233	30698331	1	-	0	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	exon	30698233	30698331	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	intron	30698332	30698438	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	CDS	30698439	30698555	0.97	-	0	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	exon	30698439	30698555	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	intron	30698556	30698706	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	CDS	30698707	30698758	0.67	-	1	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	exon	30698707	30698758	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	intron	30698759	30698866	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	CDS	30698867	30698907	0.93	-	0	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	exon	30698867	30698907	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	intron	30698908	30699047	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	CDS	30699048	30699326	0.26	-	0	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	exon	30699048	30699326	.	-	.	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
Ledus.S1	AUGUSTUS	start_codon	30699324	30699326	.	-	0	transcript_id "Ledus.S1G377200.t1"; gene_id "Ledus.S1G377200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg278.t1 is derived from g7139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1377727	1381437	.	-	.	Ledus.S2G016000
Ledus.S2	AUGUSTUS	transcript	1377727	1381437	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	stop_codon	1377724	1377726	.	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1377727	1377891	1	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1377727	1377891	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	intron	1377892	1377998	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1377999	1378109	0.87	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1377999	1378109	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	intron	1378110	1378194	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1378195	1378374	1	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1378195	1378374	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	intron	1378375	1378539	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1378540	1378644	0.83	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1378540	1378644	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	intron	1378645	1378748	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1378749	1378847	1	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1378749	1378847	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	intron	1378848	1379032	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1379033	1379188	1	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1379033	1379188	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	intron	1379189	1379382	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1379383	1379461	1	-	1	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1379383	1379461	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	intron	1379462	1379625	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1379626	1379691	1	-	1	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1379626	1379691	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	intron	1379692	1379792	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1379793	1379965	0.99	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1379793	1379965	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	intron	1379966	1380229	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1380230	1380580	0.97	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1380230	1380580	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	intron	1380581	1380698	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1380699	1380854	1	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1380699	1380854	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	intron	1380855	1380987	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1380988	1381065	0.99	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1380988	1381065	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	intron	1381066	1381161	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	CDS	1381162	1381437	0.97	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	exon	1381162	1381437	.	-	.	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
Ledus.S2	AUGUSTUS	start_codon	1381435	1381437	.	-	0	transcript_id "Ledus.S2G016000.t1"; gene_id "Ledus.S2G016000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3157.t1 is derived from g592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6394039	6395036	.	+	.	Ledus.S1G057800
Ledus.S1	AUGUSTUS	transcript	6394039	6395036	.	+	.	transcript_id "Ledus.S1G057800.t1"; gene_id "Ledus.S1G057800"
Ledus.S1	AUGUSTUS	start_codon	6394039	6394041	.	+	0	transcript_id "Ledus.S1G057800.t1"; gene_id "Ledus.S1G057800"
Ledus.S1	AUGUSTUS	CDS	6394039	6394116	0.97	+	0	transcript_id "Ledus.S1G057800.t1"; gene_id "Ledus.S1G057800"
Ledus.S1	AUGUSTUS	exon	6394039	6394116	.	+	.	transcript_id "Ledus.S1G057800.t1"; gene_id "Ledus.S1G057800"
Ledus.S1	AUGUSTUS	intron	6394117	6394667	.	+	.	transcript_id "Ledus.S1G057800.t1"; gene_id "Ledus.S1G057800"
Ledus.S1	AUGUSTUS	CDS	6394668	6394775	1	+	0	transcript_id "Ledus.S1G057800.t1"; gene_id "Ledus.S1G057800"
Ledus.S1	AUGUSTUS	exon	6394668	6394775	.	+	.	transcript_id "Ledus.S1G057800.t1"; gene_id "Ledus.S1G057800"
Ledus.S1	AUGUSTUS	intron	6394776	6394871	.	+	.	transcript_id "Ledus.S1G057800.t1"; gene_id "Ledus.S1G057800"
Ledus.S1	AUGUSTUS	CDS	6394872	6395036	1	+	0	transcript_id "Ledus.S1G057800.t1"; gene_id "Ledus.S1G057800"
Ledus.S1	AUGUSTUS	exon	6394872	6395036	.	+	.	transcript_id "Ledus.S1G057800.t1"; gene_id "Ledus.S1G057800"
Ledus.S1	AUGUSTUS	stop_codon	6395037	6395039	.	+	0	transcript_id "Ledus.S1G057800.t1"; gene_id "Ledus.S1G057800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7453.t1 is derived from g12124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2839105	2839311	.	-	.	Ledus.S5G023100
Ledus.S5	AUGUSTUS	transcript	2839105	2839311	.	-	.	transcript_id "Ledus.S5G023100.t1"; gene_id "Ledus.S5G023100"
Ledus.S5	AUGUSTUS	stop_codon	2839102	2839104	.	-	0	transcript_id "Ledus.S5G023100.t1"; gene_id "Ledus.S5G023100"
Ledus.S5	AUGUSTUS	CDS	2839105	2839311	0.86	-	0	transcript_id "Ledus.S5G023100.t1"; gene_id "Ledus.S5G023100"
Ledus.S5	AUGUSTUS	exon	2839105	2839311	.	-	.	transcript_id "Ledus.S5G023100.t1"; gene_id "Ledus.S5G023100"
Ledus.S5	AUGUSTUS	start_codon	2839309	2839311	.	-	0	transcript_id "Ledus.S5G023100.t1"; gene_id "Ledus.S5G023100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10551.t1 is derived from g11581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16069500	16070453	.	-	.	Ledus.S3G202800
Ledus.S3	AUGUSTUS	transcript	16069500	16070453	.	-	.	transcript_id "Ledus.S3G202800.t1"; gene_id "Ledus.S3G202800"
Ledus.S3	AUGUSTUS	stop_codon	16069497	16069499	.	-	0	transcript_id "Ledus.S3G202800.t1"; gene_id "Ledus.S3G202800"
Ledus.S3	AUGUSTUS	CDS	16069500	16070453	0.76	-	0	transcript_id "Ledus.S3G202800.t1"; gene_id "Ledus.S3G202800"
Ledus.S3	AUGUSTUS	exon	16069500	16070453	.	-	.	transcript_id "Ledus.S3G202800.t1"; gene_id "Ledus.S3G202800"
Ledus.S3	AUGUSTUS	start_codon	16070451	16070453	.	-	0	transcript_id "Ledus.S3G202800.t1"; gene_id "Ledus.S3G202800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12579.t1 is derived from g6201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12966765	12967326	.	+	.	Ledus.S4G173500
Ledus.S4	AUGUSTUS	transcript	12966765	12967326	.	+	.	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	start_codon	12966765	12966767	.	+	0	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	CDS	12966765	12966767	1	+	0	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	exon	12966765	12966767	.	+	.	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	intron	12966768	12966871	.	+	.	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	CDS	12966872	12967007	1	+	0	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	exon	12966872	12967007	.	+	.	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	intron	12967008	12967089	.	+	.	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	CDS	12967090	12967191	1	+	2	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	exon	12967090	12967191	.	+	.	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	intron	12967192	12967282	.	+	.	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	CDS	12967283	12967326	1	+	2	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	exon	12967283	12967326	.	+	.	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
Ledus.S4	AUGUSTUS	stop_codon	12967327	12967329	.	+	0	transcript_id "Ledus.S4G173500.t1"; gene_id "Ledus.S4G173500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5885.t1 is derived from g3327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27587295	27590143	.	-	.	Ledus.S1G330600
Ledus.S1	AUGUSTUS	transcript	27587295	27590143	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	stop_codon	27587292	27587294	.	-	0	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27587295	27588260	0.97	-	0	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27587295	27588260	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27588261	27588348	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27588349	27588418	1	-	1	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27588349	27588418	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27588419	27588576	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27588577	27588643	0.93	-	2	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27588577	27588643	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27588644	27588765	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27588766	27588820	1	-	0	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27588766	27588820	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27588821	27589070	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27589071	27589147	1	-	2	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27589071	27589147	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27589148	27589256	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27589257	27589372	0.67	-	1	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27589257	27589372	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27589373	27589439	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27589440	27589514	0.84	-	1	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27589440	27589514	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27589515	27589736	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27589737	27589861	1	-	0	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27589737	27589861	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27589862	27589936	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27589937	27589941	0.99	-	2	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27589937	27589941	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27589942	27590079	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27590080	27590143	0.75	-	0	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27590080	27590143	.	-	.	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	start_codon	27590141	27590143	.	-	0	transcript_id "Ledus.S1G330600.t1"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	transcript	27587295	27590143	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	stop_codon	27587292	27587294	.	-	0	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27587295	27588260	0.99	-	0	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27587295	27588260	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27588261	27588348	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27588349	27588418	1	-	1	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27588349	27588418	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27588419	27588576	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27588577	27588643	0.94	-	2	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27588577	27588643	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27588644	27588765	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27588766	27588820	0.97	-	0	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27588766	27588820	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27588821	27589070	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27589071	27589147	0.98	-	2	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27589071	27589147	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27589148	27589256	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27589257	27589372	0.66	-	1	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27589257	27589372	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27589373	27589439	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27589440	27589514	0.8	-	1	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27589440	27589514	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27589515	27589736	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27589737	27589849	0.85	-	0	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27589737	27589849	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27589850	27589936	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27589937	27589941	0.83	-	2	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27589937	27589941	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	intron	27589942	27590079	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	CDS	27590080	27590143	0.65	-	0	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	exon	27590080	27590143	.	-	.	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
Ledus.S1	AUGUSTUS	start_codon	27590141	27590143	.	-	0	transcript_id "Ledus.S1G330600.t2"; gene_id "Ledus.S1G330600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8818.t1 is derived from g9848.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2126424	2128475	.	+	.	Ledus.S3G029500
Ledus.S3	AUGUSTUS	transcript	2126424	2128475	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	start_codon	2126424	2126426	.	+	0	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	CDS	2126424	2126681	0.54	+	0	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	exon	2126424	2126681	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	intron	2126682	2126763	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	CDS	2126764	2126867	1	+	0	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	exon	2126764	2126867	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	intron	2126868	2126945	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	CDS	2126946	2127081	1	+	1	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	exon	2126946	2127081	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	intron	2127082	2127152	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	CDS	2127153	2127384	1	+	0	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	exon	2127153	2127384	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	intron	2127385	2127456	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	CDS	2127457	2127614	1	+	2	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	exon	2127457	2127614	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	intron	2127615	2127715	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	CDS	2127716	2127904	1	+	0	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	exon	2127716	2127904	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	intron	2127905	2128028	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	CDS	2128029	2128129	1	+	0	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	exon	2128029	2128129	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	intron	2128130	2128204	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	CDS	2128205	2128301	0.99	+	1	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	exon	2128205	2128301	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	intron	2128302	2128403	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	CDS	2128404	2128475	0.98	+	0	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	exon	2128404	2128475	.	+	.	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
Ledus.S3	AUGUSTUS	stop_codon	2128476	2128478	.	+	0	transcript_id "Ledus.S3G029500.t1"; gene_id "Ledus.S3G029500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10410.t1 is derived from g11440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15003495	15003797	.	-	.	Ledus.S3G188700
Ledus.S3	AUGUSTUS	transcript	15003495	15003797	.	-	.	transcript_id "Ledus.S3G188700.t1"; gene_id "Ledus.S3G188700"
Ledus.S3	AUGUSTUS	stop_codon	15003492	15003494	.	-	0	transcript_id "Ledus.S3G188700.t1"; gene_id "Ledus.S3G188700"
Ledus.S3	AUGUSTUS	CDS	15003495	15003797	0.92	-	0	transcript_id "Ledus.S3G188700.t1"; gene_id "Ledus.S3G188700"
Ledus.S3	AUGUSTUS	exon	15003495	15003797	.	-	.	transcript_id "Ledus.S3G188700.t1"; gene_id "Ledus.S3G188700"
Ledus.S3	AUGUSTUS	start_codon	15003795	15003797	.	-	0	transcript_id "Ledus.S3G188700.t1"; gene_id "Ledus.S3G188700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8138.t1 is derived from g12809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9327439	9328862	.	+	.	Ledus.S5G091600
Ledus.S5	AUGUSTUS	transcript	9327439	9328862	.	+	.	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	start_codon	9327439	9327441	.	+	0	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	CDS	9327439	9327634	0.99	+	0	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	exon	9327439	9327634	.	+	.	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	intron	9327635	9327712	.	+	.	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	CDS	9327713	9328005	1	+	2	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	exon	9327713	9328005	.	+	.	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	intron	9328006	9328083	.	+	.	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	CDS	9328084	9328332	1	+	0	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	exon	9328084	9328332	.	+	.	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	intron	9328333	9328421	.	+	.	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	CDS	9328422	9328862	1	+	0	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	exon	9328422	9328862	.	+	.	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
Ledus.S5	AUGUSTUS	stop_codon	9328863	9328865	.	+	0	transcript_id "Ledus.S5G091600.t1"; gene_id "Ledus.S5G091600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2158.t1 is derived from g9021.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15367852	15368142	.	+	.	Ledus.S2G204000
Ledus.S2	AUGUSTUS	transcript	15367852	15368142	.	+	.	transcript_id "Ledus.S2G204000.t1"; gene_id "Ledus.S2G204000"
Ledus.S2	AUGUSTUS	start_codon	15367852	15367854	.	+	0	transcript_id "Ledus.S2G204000.t1"; gene_id "Ledus.S2G204000"
Ledus.S2	AUGUSTUS	CDS	15367852	15368142	0.38	+	0	transcript_id "Ledus.S2G204000.t1"; gene_id "Ledus.S2G204000"
Ledus.S2	AUGUSTUS	exon	15367852	15368142	.	+	.	transcript_id "Ledus.S2G204000.t1"; gene_id "Ledus.S2G204000"
Ledus.S2	AUGUSTUS	stop_codon	15368143	15368145	.	+	0	transcript_id "Ledus.S2G204000.t1"; gene_id "Ledus.S2G204000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4293.t1 is derived from g1729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16082628	16084938	.	+	.	Ledus.S1G171400
Ledus.S1	AUGUSTUS	transcript	16082628	16084938	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	start_codon	16082628	16082630	.	+	0	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	CDS	16082628	16082686	0.5	+	0	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	exon	16082628	16082686	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	intron	16082687	16082762	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	CDS	16082763	16082892	0.8	+	1	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	exon	16082763	16082892	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	intron	16082893	16082977	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	CDS	16082978	16083088	1	+	0	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	exon	16082978	16083088	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	intron	16083089	16083233	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	CDS	16083234	16083266	1	+	0	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	exon	16083234	16083266	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	intron	16083267	16083354	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	CDS	16083355	16083523	1	+	0	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	exon	16083355	16083523	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	intron	16083524	16083659	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	CDS	16083660	16083841	1	+	2	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	exon	16083660	16083841	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	intron	16083842	16083945	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	CDS	16083946	16084082	0.97	+	0	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	exon	16083946	16084082	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	intron	16084083	16084185	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	CDS	16084186	16084284	0.98	+	1	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	exon	16084186	16084284	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	intron	16084285	16084390	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	CDS	16084391	16084460	1	+	1	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	exon	16084391	16084460	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	intron	16084461	16084550	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	CDS	16084551	16084625	1	+	0	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	exon	16084551	16084625	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	intron	16084626	16084718	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	CDS	16084719	16084764	0.93	+	0	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	exon	16084719	16084764	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	intron	16084765	16084882	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	CDS	16084883	16084938	0.93	+	2	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	exon	16084883	16084938	.	+	.	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
Ledus.S1	AUGUSTUS	stop_codon	16084939	16084941	.	+	0	transcript_id "Ledus.S1G171400.t1"; gene_id "Ledus.S1G171400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8322.t1 is derived from g12994.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10733583	10735627	.	-	.	Ledus.S5G110000
Ledus.S5	AUGUSTUS	transcript	10733583	10735627	.	-	.	transcript_id "Ledus.S5G110000.t1"; gene_id "Ledus.S5G110000"
Ledus.S5	AUGUSTUS	stop_codon	10733580	10733582	.	-	0	transcript_id "Ledus.S5G110000.t1"; gene_id "Ledus.S5G110000"
Ledus.S5	AUGUSTUS	CDS	10733583	10735244	0.83	-	0	transcript_id "Ledus.S5G110000.t1"; gene_id "Ledus.S5G110000"
Ledus.S5	AUGUSTUS	exon	10733583	10735244	.	-	.	transcript_id "Ledus.S5G110000.t1"; gene_id "Ledus.S5G110000"
Ledus.S5	AUGUSTUS	intron	10735245	10735352	.	-	.	transcript_id "Ledus.S5G110000.t1"; gene_id "Ledus.S5G110000"
Ledus.S5	AUGUSTUS	CDS	10735353	10735385	0.98	-	0	transcript_id "Ledus.S5G110000.t1"; gene_id "Ledus.S5G110000"
Ledus.S5	AUGUSTUS	exon	10735353	10735385	.	-	.	transcript_id "Ledus.S5G110000.t1"; gene_id "Ledus.S5G110000"
Ledus.S5	AUGUSTUS	intron	10735386	10735525	.	-	.	transcript_id "Ledus.S5G110000.t1"; gene_id "Ledus.S5G110000"
Ledus.S5	AUGUSTUS	CDS	10735526	10735627	0.96	-	0	transcript_id "Ledus.S5G110000.t1"; gene_id "Ledus.S5G110000"
Ledus.S5	AUGUSTUS	exon	10735526	10735627	.	-	.	transcript_id "Ledus.S5G110000.t1"; gene_id "Ledus.S5G110000"
Ledus.S5	AUGUSTUS	start_codon	10735625	10735627	.	-	0	transcript_id "Ledus.S5G110000.t1"; gene_id "Ledus.S5G110000"
# This transcript jg1984.t2 is derived from g8847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1985.t1 is derived from g8848.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14059264	14060175	.	-	.	Ledus.S2G186700
Ledus.S2	AUGUSTUS	transcript	14059264	14060175	.	-	.	transcript_id "Ledus.S2G186700.t1"; gene_id "Ledus.S2G186700"
Ledus.S2	AUGUSTUS	stop_codon	14059261	14059263	.	-	0	transcript_id "Ledus.S2G186700.t1"; gene_id "Ledus.S2G186700"
Ledus.S2	AUGUSTUS	CDS	14059264	14060175	0.57	-	0	transcript_id "Ledus.S2G186700.t1"; gene_id "Ledus.S2G186700"
Ledus.S2	AUGUSTUS	exon	14059264	14060175	.	-	.	transcript_id "Ledus.S2G186700.t1"; gene_id "Ledus.S2G186700"
Ledus.S2	AUGUSTUS	start_codon	14060173	14060175	.	-	0	transcript_id "Ledus.S2G186700.t1"; gene_id "Ledus.S2G186700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2230.t1 is derived from g9093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16186566	16187357	.	-	.	Ledus.S2G211200
Ledus.S2	AUGUSTUS	transcript	16186566	16187357	.	-	.	transcript_id "Ledus.S2G211200.t1"; gene_id "Ledus.S2G211200"
Ledus.S2	AUGUSTUS	stop_codon	16186563	16186565	.	-	0	transcript_id "Ledus.S2G211200.t1"; gene_id "Ledus.S2G211200"
Ledus.S2	AUGUSTUS	CDS	16186566	16187025	0.41	-	1	transcript_id "Ledus.S2G211200.t1"; gene_id "Ledus.S2G211200"
Ledus.S2	AUGUSTUS	exon	16186566	16187025	.	-	.	transcript_id "Ledus.S2G211200.t1"; gene_id "Ledus.S2G211200"
Ledus.S2	AUGUSTUS	intron	16187026	16187295	.	-	.	transcript_id "Ledus.S2G211200.t1"; gene_id "Ledus.S2G211200"
Ledus.S2	AUGUSTUS	CDS	16187296	16187357	0.3	-	0	transcript_id "Ledus.S2G211200.t1"; gene_id "Ledus.S2G211200"
Ledus.S2	AUGUSTUS	exon	16187296	16187357	.	-	.	transcript_id "Ledus.S2G211200.t1"; gene_id "Ledus.S2G211200"
Ledus.S2	AUGUSTUS	start_codon	16187355	16187357	.	-	0	transcript_id "Ledus.S2G211200.t1"; gene_id "Ledus.S2G211200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10027.t1 is derived from g11057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12052946	12053233	.	+	.	Ledus.S3G150400
Ledus.S3	AUGUSTUS	transcript	12052946	12053233	.	+	.	transcript_id "Ledus.S3G150400.t1"; gene_id "Ledus.S3G150400"
Ledus.S3	AUGUSTUS	start_codon	12052946	12052948	.	+	0	transcript_id "Ledus.S3G150400.t1"; gene_id "Ledus.S3G150400"
Ledus.S3	AUGUSTUS	CDS	12052946	12053233	0.81	+	0	transcript_id "Ledus.S3G150400.t1"; gene_id "Ledus.S3G150400"
Ledus.S3	AUGUSTUS	exon	12052946	12053233	.	+	.	transcript_id "Ledus.S3G150400.t1"; gene_id "Ledus.S3G150400"
Ledus.S3	AUGUSTUS	stop_codon	12053234	12053236	.	+	0	transcript_id "Ledus.S3G150400.t1"; gene_id "Ledus.S3G150400"
# This transcript jg628.t2 is derived from g7489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg629.t1 is derived from g7490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3782773	3783886	.	-	.	Ledus.S2G051100
Ledus.S2	AUGUSTUS	transcript	3782773	3783886	.	-	.	transcript_id "Ledus.S2G051100.t1"; gene_id "Ledus.S2G051100"
Ledus.S2	AUGUSTUS	stop_codon	3782770	3782772	.	-	0	transcript_id "Ledus.S2G051100.t1"; gene_id "Ledus.S2G051100"
Ledus.S2	AUGUSTUS	CDS	3782773	3783605	1	-	2	transcript_id "Ledus.S2G051100.t1"; gene_id "Ledus.S2G051100"
Ledus.S2	AUGUSTUS	exon	3782773	3783605	.	-	.	transcript_id "Ledus.S2G051100.t1"; gene_id "Ledus.S2G051100"
Ledus.S2	AUGUSTUS	intron	3783606	3783702	.	-	.	transcript_id "Ledus.S2G051100.t1"; gene_id "Ledus.S2G051100"
Ledus.S2	AUGUSTUS	CDS	3783703	3783886	0.66	-	0	transcript_id "Ledus.S2G051100.t1"; gene_id "Ledus.S2G051100"
Ledus.S2	AUGUSTUS	exon	3783703	3783886	.	-	.	transcript_id "Ledus.S2G051100.t1"; gene_id "Ledus.S2G051100"
Ledus.S2	AUGUSTUS	start_codon	3783884	3783886	.	-	0	transcript_id "Ledus.S2G051100.t1"; gene_id "Ledus.S2G051100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6732.t1 is derived from g4175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33617491	33618648	.	-	.	Ledus.S1G415300
Ledus.S1	AUGUSTUS	transcript	33617491	33618648	.	-	.	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	stop_codon	33617488	33617490	.	-	0	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	CDS	33617491	33617934	1	-	0	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	exon	33617491	33617934	.	-	.	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	intron	33617935	33618012	.	-	.	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	CDS	33618013	33618099	1	-	0	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	exon	33618013	33618099	.	-	.	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	intron	33618100	33618168	.	-	.	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	CDS	33618169	33618402	1	-	0	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	exon	33618169	33618402	.	-	.	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	intron	33618403	33618489	.	-	.	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	CDS	33618490	33618648	1	-	0	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	exon	33618490	33618648	.	-	.	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
Ledus.S1	AUGUSTUS	start_codon	33618646	33618648	.	-	0	transcript_id "Ledus.S1G415300.t1"; gene_id "Ledus.S1G415300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1662.t1 is derived from g8523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11760403	11761988	.	-	.	Ledus.S2G154400
Ledus.S2	AUGUSTUS	transcript	11760403	11761988	.	-	.	transcript_id "Ledus.S2G154400.t1"; gene_id "Ledus.S2G154400"
Ledus.S2	AUGUSTUS	stop_codon	11760400	11760402	.	-	0	transcript_id "Ledus.S2G154400.t1"; gene_id "Ledus.S2G154400"
Ledus.S2	AUGUSTUS	CDS	11760403	11760847	0.38	-	1	transcript_id "Ledus.S2G154400.t1"; gene_id "Ledus.S2G154400"
Ledus.S2	AUGUSTUS	exon	11760403	11760847	.	-	.	transcript_id "Ledus.S2G154400.t1"; gene_id "Ledus.S2G154400"
Ledus.S2	AUGUSTUS	intron	11760848	11760951	.	-	.	transcript_id "Ledus.S2G154400.t1"; gene_id "Ledus.S2G154400"
Ledus.S2	AUGUSTUS	CDS	11760952	11761197	0.36	-	1	transcript_id "Ledus.S2G154400.t1"; gene_id "Ledus.S2G154400"
Ledus.S2	AUGUSTUS	exon	11760952	11761197	.	-	.	transcript_id "Ledus.S2G154400.t1"; gene_id "Ledus.S2G154400"
Ledus.S2	AUGUSTUS	intron	11761198	11761575	.	-	.	transcript_id "Ledus.S2G154400.t1"; gene_id "Ledus.S2G154400"
Ledus.S2	AUGUSTUS	CDS	11761576	11761988	1	-	0	transcript_id "Ledus.S2G154400.t1"; gene_id "Ledus.S2G154400"
Ledus.S2	AUGUSTUS	exon	11761576	11761988	.	-	.	transcript_id "Ledus.S2G154400.t1"; gene_id "Ledus.S2G154400"
Ledus.S2	AUGUSTUS	start_codon	11761986	11761988	.	-	0	transcript_id "Ledus.S2G154400.t1"; gene_id "Ledus.S2G154400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg547.t1 is derived from g7408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3155252	3157593	.	+	.	Ledus.S2G042900
Ledus.S2	AUGUSTUS	transcript	3155252	3157593	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	start_codon	3155252	3155254	.	+	0	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	CDS	3155252	3155657	0.43	+	0	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	exon	3155252	3155657	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	intron	3155658	3155808	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	CDS	3155809	3155954	1	+	2	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	exon	3155809	3155954	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	intron	3155955	3156105	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	CDS	3156106	3156246	0.99	+	0	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	exon	3156106	3156246	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	intron	3156247	3156351	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	CDS	3156352	3156465	1	+	0	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	exon	3156352	3156465	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	intron	3156466	3156655	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	CDS	3156656	3156781	1	+	0	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	exon	3156656	3156781	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	intron	3156782	3156889	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	CDS	3156890	3156988	1	+	0	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	exon	3156890	3156988	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	intron	3156989	3157127	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	CDS	3157128	3157232	1	+	0	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	exon	3157128	3157232	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	intron	3157233	3157329	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	CDS	3157330	3157593	0.36	+	0	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	exon	3157330	3157593	.	+	.	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
Ledus.S2	AUGUSTUS	stop_codon	3157594	3157596	.	+	0	transcript_id "Ledus.S2G042900.t1"; gene_id "Ledus.S2G042900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7687.t1 is derived from g12358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5180539	5181021	.	+	.	Ledus.S5G046500
Ledus.S5	AUGUSTUS	transcript	5180539	5181021	.	+	.	transcript_id "Ledus.S5G046500.t1"; gene_id "Ledus.S5G046500"
Ledus.S5	AUGUSTUS	start_codon	5180539	5180541	.	+	0	transcript_id "Ledus.S5G046500.t1"; gene_id "Ledus.S5G046500"
Ledus.S5	AUGUSTUS	CDS	5180539	5181021	0.91	+	0	transcript_id "Ledus.S5G046500.t1"; gene_id "Ledus.S5G046500"
Ledus.S5	AUGUSTUS	exon	5180539	5181021	.	+	.	transcript_id "Ledus.S5G046500.t1"; gene_id "Ledus.S5G046500"
Ledus.S5	AUGUSTUS	stop_codon	5181022	5181024	.	+	0	transcript_id "Ledus.S5G046500.t1"; gene_id "Ledus.S5G046500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2919.t1 is derived from g354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4581558	4584476	.	+	.	Ledus.S1G034000
Ledus.S1	AUGUSTUS	transcript	4581558	4584476	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	start_codon	4581558	4581560	.	+	0	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	CDS	4581558	4581845	1	+	0	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	exon	4581558	4581845	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	intron	4581846	4581928	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	CDS	4581929	4582371	0.84	+	0	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	exon	4581929	4582371	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	intron	4582372	4582538	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	CDS	4582539	4582651	0.88	+	1	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	exon	4582539	4582651	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	intron	4582652	4582840	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	CDS	4582841	4582910	0.87	+	2	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	exon	4582841	4582910	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	intron	4582911	4583026	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	CDS	4583027	4583126	0.99	+	1	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	exon	4583027	4583126	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	intron	4583127	4583298	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	CDS	4583299	4583367	1	+	0	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	exon	4583299	4583367	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	intron	4583368	4583519	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	CDS	4583520	4584476	0.99	+	0	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	exon	4583520	4584476	.	+	.	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
Ledus.S1	AUGUSTUS	stop_codon	4584477	4584479	.	+	0	transcript_id "Ledus.S1G034000.t1"; gene_id "Ledus.S1G034000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1719.t1 is derived from g8580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12124065	12124499	.	-	.	Ledus.S2G160100
Ledus.S2	AUGUSTUS	transcript	12124065	12124499	.	-	.	transcript_id "Ledus.S2G160100.t1"; gene_id "Ledus.S2G160100"
Ledus.S2	AUGUSTUS	stop_codon	12124062	12124064	.	-	0	transcript_id "Ledus.S2G160100.t1"; gene_id "Ledus.S2G160100"
Ledus.S2	AUGUSTUS	CDS	12124065	12124499	0.6	-	0	transcript_id "Ledus.S2G160100.t1"; gene_id "Ledus.S2G160100"
Ledus.S2	AUGUSTUS	exon	12124065	12124499	.	-	.	transcript_id "Ledus.S2G160100.t1"; gene_id "Ledus.S2G160100"
Ledus.S2	AUGUSTUS	start_codon	12124497	12124499	.	-	0	transcript_id "Ledus.S2G160100.t1"; gene_id "Ledus.S2G160100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg386.t1 is derived from g7247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2151134	2155937	.	+	.	Ledus.S2G026800
Ledus.S2	AUGUSTUS	transcript	2151134	2155937	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	start_codon	2151134	2151136	.	+	0	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2151134	2151191	0.83	+	0	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2151134	2151191	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2151192	2151264	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2151265	2151572	1	+	2	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2151265	2151572	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2151573	2151660	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2151661	2151929	1	+	0	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2151661	2151929	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2151930	2152016	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2152017	2152277	0.99	+	1	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2152017	2152277	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2152278	2152375	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2152376	2152605	1	+	1	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2152376	2152605	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2152606	2152733	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2152734	2152863	0.97	+	2	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2152734	2152863	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2152864	2152976	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2152977	2153051	0.91	+	1	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2152977	2153051	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2153052	2153151	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2153152	2153223	0.97	+	1	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2153152	2153223	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2153224	2153320	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2153321	2153383	0.99	+	1	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2153321	2153383	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2153384	2153497	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2153498	2153572	1	+	1	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2153498	2153572	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2153573	2153720	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2153721	2153959	1	+	1	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2153721	2153959	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2153960	2154046	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2154047	2154267	1	+	2	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2154047	2154267	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2154268	2154352	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2154353	2154479	0.99	+	0	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2154353	2154479	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2154480	2154582	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2154583	2154648	1	+	2	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2154583	2154648	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2154649	2154740	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2154741	2154933	1	+	2	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2154741	2154933	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2154934	2155006	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2155007	2155139	1	+	1	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2155007	2155139	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2155140	2155233	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2155234	2155357	0.69	+	0	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2155234	2155357	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2155358	2155854	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2155855	2155937	0.17	+	2	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2155855	2155937	.	+	.	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	stop_codon	2155938	2155940	.	+	0	transcript_id "Ledus.S2G026800.t1"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	transcript	2151134	2155937	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	start_codon	2151134	2151136	.	+	0	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2151134	2151191	0.84	+	0	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2151134	2151191	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2151192	2151264	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2151265	2151572	1	+	2	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2151265	2151572	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2151573	2151660	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2151661	2151929	1	+	0	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2151661	2151929	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2151930	2152016	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2152017	2152277	1	+	1	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2152017	2152277	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2152278	2152375	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2152376	2152605	1	+	1	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2152376	2152605	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2152606	2152733	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2152734	2152863	0.96	+	2	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2152734	2152863	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2152864	2152976	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2152977	2153051	0.89	+	1	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2152977	2153051	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2153052	2153151	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2153152	2153223	0.95	+	1	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2153152	2153223	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2153224	2153320	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2153321	2153383	0.99	+	1	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2153321	2153383	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2153384	2153497	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2153498	2153523	1	+	1	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2153498	2153523	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2153524	2153720	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2153721	2153754	0.98	+	2	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2153721	2153754	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2153755	2153918	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2153919	2153959	0.99	+	1	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2153919	2153959	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2153960	2154046	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2154047	2154267	1	+	2	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2154047	2154267	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2154268	2154352	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2154353	2154479	1	+	0	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2154353	2154479	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2154480	2154582	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2154583	2154648	1	+	2	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2154583	2154648	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2154649	2154740	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2154741	2154933	1	+	2	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2154741	2154933	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2154934	2155006	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2155007	2155139	1	+	1	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2155007	2155139	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2155140	2155233	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2155234	2155357	0.6	+	0	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2155234	2155357	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	intron	2155358	2155854	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	CDS	2155855	2155937	0.15	+	2	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	exon	2155855	2155937	.	+	.	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
Ledus.S2	AUGUSTUS	stop_codon	2155938	2155940	.	+	0	transcript_id "Ledus.S2G026800.t2"; gene_id "Ledus.S2G026800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg13144.t1 is derived from g6954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7207422	7211786	.	-	.	Ledus.S6G020600
Ledus.S6	AUGUSTUS	transcript	7207422	7210724	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	stop_codon	7207419	7207421	.	-	0	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7207422	7207629	0.91	-	1	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7207422	7207629	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7207630	7207761	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7207762	7207828	1	-	2	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7207762	7207828	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7207829	7207923	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7207924	7207981	1	-	0	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7207924	7207981	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7207982	7208075	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7208076	7208113	1	-	2	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7208076	7208113	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7208114	7208267	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7208268	7208366	1	-	2	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7208268	7208366	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7208367	7208480	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7208481	7208547	0.98	-	0	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7208481	7208547	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7208548	7208741	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7208742	7208810	1	-	0	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7208742	7208810	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7208811	7208883	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7208884	7208949	1	-	0	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7208884	7208949	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7208950	7209041	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7209042	7209150	0.81	-	1	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7209042	7209150	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7209151	7209263	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7209264	7209330	1	-	2	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7209264	7209330	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7209331	7209456	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7209457	7209509	1	-	1	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7209457	7209509	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7209510	7209624	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7209625	7209727	1	-	2	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7209625	7209727	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7209728	7209858	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7209859	7209997	1	-	0	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7209859	7209997	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7209998	7210090	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7210091	7210180	1	-	0	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7210091	7210180	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7210181	7210253	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7210254	7210322	1	-	0	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7210254	7210322	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7210323	7210488	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7210489	7210567	1	-	1	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7210489	7210567	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7210568	7210716	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7210717	7210724	1	-	0	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7210717	7210724	.	-	.	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	start_codon	7210722	7210724	.	-	0	transcript_id "Ledus.S6G020600.t1"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	transcript	7208739	7211786	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	stop_codon	7208736	7208738	.	-	0	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7208739	7208810	1	-	0	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7208739	7208810	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7208811	7208883	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7208884	7208949	1	-	0	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7208884	7208949	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7208950	7209041	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7209042	7209150	0.82	-	1	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7209042	7209150	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7209151	7209263	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7209264	7209330	1	-	2	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7209264	7209330	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7209331	7209456	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7209457	7209509	1	-	1	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7209457	7209509	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7209510	7209624	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7209625	7209727	1	-	2	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7209625	7209727	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7209728	7209858	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7209859	7209997	1	-	0	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7209859	7209997	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7209998	7210090	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7210091	7210180	1	-	0	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7210091	7210180	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7210181	7210253	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7210254	7210322	1	-	0	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7210254	7210322	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7210323	7210488	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7210489	7210567	1	-	1	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7210489	7210567	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7210568	7210716	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7210717	7210726	0.88	-	2	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7210717	7210726	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7210727	7210770	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7210771	7210833	0.88	-	2	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7210771	7210833	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7210834	7210995	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7210996	7211077	0.88	-	0	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7210996	7211077	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	intron	7211078	7211777	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	CDS	7211778	7211786	0.88	-	0	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	exon	7211778	7211786	.	-	.	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
Ledus.S6	AUGUSTUS	start_codon	7211784	7211786	.	-	0	transcript_id "Ledus.S6G020600.t2"; gene_id "Ledus.S6G020600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg964.t1 is derived from g7825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6371326	6371622	.	+	.	Ledus.S2G084600
Ledus.S2	AUGUSTUS	transcript	6371326	6371622	.	+	.	transcript_id "Ledus.S2G084600.t1"; gene_id "Ledus.S2G084600"
Ledus.S2	AUGUSTUS	start_codon	6371326	6371328	.	+	0	transcript_id "Ledus.S2G084600.t1"; gene_id "Ledus.S2G084600"
Ledus.S2	AUGUSTUS	CDS	6371326	6371622	0.63	+	0	transcript_id "Ledus.S2G084600.t1"; gene_id "Ledus.S2G084600"
Ledus.S2	AUGUSTUS	exon	6371326	6371622	.	+	.	transcript_id "Ledus.S2G084600.t1"; gene_id "Ledus.S2G084600"
Ledus.S2	AUGUSTUS	stop_codon	6371623	6371625	.	+	0	transcript_id "Ledus.S2G084600.t1"; gene_id "Ledus.S2G084600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7805.t1 is derived from g12476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6874362	6874667	.	+	.	Ledus.S5G058300
Ledus.S5	AUGUSTUS	transcript	6874362	6874667	.	+	.	transcript_id "Ledus.S5G058300.t1"; gene_id "Ledus.S5G058300"
Ledus.S5	AUGUSTUS	start_codon	6874362	6874364	.	+	0	transcript_id "Ledus.S5G058300.t1"; gene_id "Ledus.S5G058300"
Ledus.S5	AUGUSTUS	CDS	6874362	6874667	0.26	+	0	transcript_id "Ledus.S5G058300.t1"; gene_id "Ledus.S5G058300"
Ledus.S5	AUGUSTUS	exon	6874362	6874667	.	+	.	transcript_id "Ledus.S5G058300.t1"; gene_id "Ledus.S5G058300"
Ledus.S5	AUGUSTUS	stop_codon	6874668	6874670	.	+	0	transcript_id "Ledus.S5G058300.t1"; gene_id "Ledus.S5G058300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3417.t1 is derived from g852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8169170	8170171	.	+	.	Ledus.S1G083800
Ledus.S1	AUGUSTUS	transcript	8169170	8170171	.	+	.	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	start_codon	8169170	8169172	.	+	0	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	CDS	8169170	8169183	0.62	+	0	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	exon	8169170	8169183	.	+	.	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	intron	8169184	8169372	.	+	.	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	CDS	8169373	8169420	0.81	+	1	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	exon	8169373	8169420	.	+	.	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	intron	8169421	8169505	.	+	.	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	CDS	8169506	8169705	0.56	+	1	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	exon	8169506	8169705	.	+	.	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	intron	8169706	8169788	.	+	.	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	CDS	8169789	8169884	0.53	+	2	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	exon	8169789	8169884	.	+	.	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	intron	8169885	8170109	.	+	.	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	CDS	8170110	8170171	1	+	2	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	exon	8170110	8170171	.	+	.	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
Ledus.S1	AUGUSTUS	stop_codon	8170172	8170174	.	+	0	transcript_id "Ledus.S1G083800.t1"; gene_id "Ledus.S1G083800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4953.t1 is derived from g2391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20860930	20867682	.	-	.	Ledus.S1G237400
Ledus.S1	AUGUSTUS	transcript	20860930	20867682	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	stop_codon	20860927	20860929	.	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20860930	20861037	1	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20860930	20861037	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20861038	20861115	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20861116	20861194	1	-	1	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20861116	20861194	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20861195	20861275	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20861276	20861328	1	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20861276	20861328	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20861329	20861426	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20861427	20861626	1	-	2	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20861427	20861626	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20861627	20861716	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20861717	20861950	1	-	2	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20861717	20861950	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20861951	20862138	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20862139	20862282	1	-	2	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20862139	20862282	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20862283	20862368	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20862369	20862527	0.94	-	2	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20862369	20862527	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20862528	20862630	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20862631	20862811	0.95	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20862631	20862811	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20862812	20862898	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20862899	20862971	0.99	-	1	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20862899	20862971	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20862972	20863077	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20863078	20863227	1	-	1	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20863078	20863227	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20863228	20863388	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20863389	20863513	1	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20863389	20863513	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20863514	20863670	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20863671	20863761	1	-	1	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20863671	20863761	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20863762	20863887	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20863888	20863996	1	-	2	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20863888	20863996	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20863997	20864075	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20864076	20864175	1	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20864076	20864175	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20864176	20864255	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20864256	20864417	1	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20864256	20864417	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20864418	20864533	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20864534	20864645	1	-	1	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20864534	20864645	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20864646	20864764	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20864765	20865069	0.99	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20864765	20865069	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20865070	20865197	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20865198	20865436	0.97	-	2	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20865198	20865436	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20865437	20865540	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20865541	20865619	1	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20865541	20865619	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20865620	20865715	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20865716	20865851	1	-	1	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20865716	20865851	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20865852	20866012	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20866013	20866467	0.67	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20866013	20866467	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20866468	20866616	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20866617	20866814	1	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20866617	20866814	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20866815	20866924	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20866925	20867149	0.99	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20866925	20867149	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20867150	20867264	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20867265	20867526	1	-	1	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20867265	20867526	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	intron	20867527	20867620	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	CDS	20867621	20867682	0.89	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	exon	20867621	20867682	.	-	.	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
Ledus.S1	AUGUSTUS	start_codon	20867680	20867682	.	-	0	transcript_id "Ledus.S1G237400.t1"; gene_id "Ledus.S1G237400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7906.t1 is derived from g12577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7763276	7766590	.	+	.	Ledus.S5G068400
Ledus.S5	AUGUSTUS	transcript	7763276	7766590	.	+	.	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	start_codon	7763276	7763278	.	+	0	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	CDS	7763276	7763347	0.43	+	0	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	exon	7763276	7763347	.	+	.	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	intron	7763348	7763434	.	+	.	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	CDS	7763435	7763521	0.39	+	0	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	exon	7763435	7763521	.	+	.	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	intron	7763522	7763999	.	+	.	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	CDS	7764000	7764160	0.36	+	0	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	exon	7764000	7764160	.	+	.	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	intron	7764161	7764234	.	+	.	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	CDS	7764235	7764685	0.44	+	1	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	exon	7764235	7764685	.	+	.	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	intron	7764686	7765006	.	+	.	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	CDS	7765007	7766590	1	+	0	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	exon	7765007	7766590	.	+	.	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
Ledus.S5	AUGUSTUS	stop_codon	7766591	7766593	.	+	0	transcript_id "Ledus.S5G068400.t1"; gene_id "Ledus.S5G068400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9774.t1 is derived from g10804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9750672	9750998	.	+	.	Ledus.S3G125100
Ledus.S3	AUGUSTUS	transcript	9750672	9750998	.	+	.	transcript_id "Ledus.S3G125100.t1"; gene_id "Ledus.S3G125100"
Ledus.S3	AUGUSTUS	start_codon	9750672	9750674	.	+	0	transcript_id "Ledus.S3G125100.t1"; gene_id "Ledus.S3G125100"
Ledus.S3	AUGUSTUS	CDS	9750672	9750998	0.26	+	0	transcript_id "Ledus.S3G125100.t1"; gene_id "Ledus.S3G125100"
Ledus.S3	AUGUSTUS	exon	9750672	9750998	.	+	.	transcript_id "Ledus.S3G125100.t1"; gene_id "Ledus.S3G125100"
Ledus.S3	AUGUSTUS	stop_codon	9750999	9751001	.	+	0	transcript_id "Ledus.S3G125100.t1"; gene_id "Ledus.S3G125100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2081.t1 is derived from g8944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14635199	14637652	.	+	.	Ledus.S2G196300
Ledus.S2	AUGUSTUS	transcript	14635199	14637652	.	+	.	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	start_codon	14635199	14635201	.	+	0	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	CDS	14635199	14636330	0.81	+	0	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	exon	14635199	14636330	.	+	.	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	intron	14636331	14636591	.	+	.	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	CDS	14636592	14636845	0.76	+	2	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	exon	14636592	14636845	.	+	.	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	intron	14636846	14636926	.	+	.	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	CDS	14636927	14637006	1	+	0	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	exon	14636927	14637006	.	+	.	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	intron	14637007	14637099	.	+	.	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	CDS	14637100	14637158	1	+	1	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	exon	14637100	14637158	.	+	.	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	intron	14637159	14637250	.	+	.	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	CDS	14637251	14637417	1	+	2	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	exon	14637251	14637417	.	+	.	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	intron	14637418	14637517	.	+	.	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	CDS	14637518	14637652	1	+	0	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	exon	14637518	14637652	.	+	.	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
Ledus.S2	AUGUSTUS	stop_codon	14637653	14637655	.	+	0	transcript_id "Ledus.S2G196300.t1"; gene_id "Ledus.S2G196300"
# This transcript jg8424.t2 is derived from g13096.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8424.t3 is derived from g13096.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8425.t1 is derived from g13097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11570092	11571521	.	+	.	Ledus.S5G120300
Ledus.S5	AUGUSTUS	transcript	11570092	11571521	.	+	.	transcript_id "Ledus.S5G120300.t1"; gene_id "Ledus.S5G120300"
Ledus.S5	AUGUSTUS	start_codon	11570092	11570094	.	+	0	transcript_id "Ledus.S5G120300.t1"; gene_id "Ledus.S5G120300"
Ledus.S5	AUGUSTUS	CDS	11570092	11570754	1	+	0	transcript_id "Ledus.S5G120300.t1"; gene_id "Ledus.S5G120300"
Ledus.S5	AUGUSTUS	exon	11570092	11570754	.	+	.	transcript_id "Ledus.S5G120300.t1"; gene_id "Ledus.S5G120300"
Ledus.S5	AUGUSTUS	intron	11570755	11570846	.	+	.	transcript_id "Ledus.S5G120300.t1"; gene_id "Ledus.S5G120300"
Ledus.S5	AUGUSTUS	CDS	11570847	11571521	0.98	+	0	transcript_id "Ledus.S5G120300.t1"; gene_id "Ledus.S5G120300"
Ledus.S5	AUGUSTUS	exon	11570847	11571521	.	+	.	transcript_id "Ledus.S5G120300.t1"; gene_id "Ledus.S5G120300"
Ledus.S5	AUGUSTUS	stop_codon	11571522	11571524	.	+	0	transcript_id "Ledus.S5G120300.t1"; gene_id "Ledus.S5G120300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8772.t1 is derived from g9802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1904008	1906233	.	+	.	Ledus.S3G024900
Ledus.S3	AUGUSTUS	transcript	1904008	1906233	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	start_codon	1904008	1904010	.	+	0	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	CDS	1904008	1904378	0.85	+	0	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	exon	1904008	1904378	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	intron	1904379	1904472	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	CDS	1904473	1904660	0.54	+	1	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	exon	1904473	1904660	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	intron	1904661	1904797	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	CDS	1904798	1905073	0.54	+	2	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	exon	1904798	1905073	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	intron	1905074	1905191	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	CDS	1905192	1905406	1	+	2	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	exon	1905192	1905406	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	intron	1905407	1905494	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	CDS	1905495	1905620	0.36	+	0	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	exon	1905495	1905620	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	intron	1905621	1905733	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	CDS	1905734	1905919	0.84	+	0	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	exon	1905734	1905919	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	intron	1905920	1906014	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	CDS	1906015	1906021	0.72	+	0	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	exon	1906015	1906021	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	intron	1906022	1906103	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	CDS	1906104	1906152	0.68	+	2	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	exon	1906104	1906152	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	intron	1906153	1906229	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	CDS	1906230	1906233	0.73	+	1	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	exon	1906230	1906233	.	+	.	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
Ledus.S3	AUGUSTUS	stop_codon	1906234	1906236	.	+	0	transcript_id "Ledus.S3G024900.t1"; gene_id "Ledus.S3G024900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7665.t1 is derived from g12336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4972190	4973595	.	+	.	Ledus.S5G044300
Ledus.S5	AUGUSTUS	transcript	4972190	4973595	.	+	.	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	start_codon	4972190	4972192	.	+	0	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	CDS	4972190	4972707	0.33	+	0	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	exon	4972190	4972707	.	+	.	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	intron	4972708	4973090	.	+	.	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	CDS	4973091	4973305	0.67	+	1	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	exon	4973091	4973305	.	+	.	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	intron	4973306	4973435	.	+	.	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	CDS	4973436	4973475	0.87	+	2	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	exon	4973436	4973475	.	+	.	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	intron	4973476	4973543	.	+	.	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	CDS	4973544	4973595	0.95	+	1	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	exon	4973544	4973595	.	+	.	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
Ledus.S5	AUGUSTUS	stop_codon	4973596	4973598	.	+	0	transcript_id "Ledus.S5G044300.t1"; gene_id "Ledus.S5G044300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9180.t1 is derived from g10210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5263561	5264769	.	+	.	Ledus.S3G065700
Ledus.S3	AUGUSTUS	transcript	5263561	5264769	.	+	.	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	start_codon	5263561	5263563	.	+	0	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	CDS	5263561	5263702	0.97	+	0	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	exon	5263561	5263702	.	+	.	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	intron	5263703	5263930	.	+	.	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	CDS	5263931	5264028	1	+	2	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	exon	5263931	5264028	.	+	.	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	intron	5264029	5264338	.	+	.	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	CDS	5264339	5264395	1	+	0	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	exon	5264339	5264395	.	+	.	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	intron	5264396	5264475	.	+	.	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	CDS	5264476	5264546	1	+	0	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	exon	5264476	5264546	.	+	.	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	intron	5264547	5264768	.	+	.	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	CDS	5264769	5264769	1	+	1	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	exon	5264769	5264769	.	+	.	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
Ledus.S3	AUGUSTUS	stop_codon	5264770	5264772	.	+	0	transcript_id "Ledus.S3G065700.t1"; gene_id "Ledus.S3G065700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4261.t1 is derived from g1697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15804504	15804989	.	+	.	Ledus.S1G168200
Ledus.S1	AUGUSTUS	transcript	15804504	15804989	.	+	.	transcript_id "Ledus.S1G168200.t1"; gene_id "Ledus.S1G168200"
Ledus.S1	AUGUSTUS	start_codon	15804504	15804506	.	+	0	transcript_id "Ledus.S1G168200.t1"; gene_id "Ledus.S1G168200"
Ledus.S1	AUGUSTUS	CDS	15804504	15804989	0.78	+	0	transcript_id "Ledus.S1G168200.t1"; gene_id "Ledus.S1G168200"
Ledus.S1	AUGUSTUS	exon	15804504	15804989	.	+	.	transcript_id "Ledus.S1G168200.t1"; gene_id "Ledus.S1G168200"
Ledus.S1	AUGUSTUS	stop_codon	15804990	15804992	.	+	0	transcript_id "Ledus.S1G168200.t1"; gene_id "Ledus.S1G168200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3106.t1 is derived from g541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5930089	5930550	.	-	.	Ledus.S1G052700
Ledus.S1	AUGUSTUS	transcript	5930089	5930550	.	-	.	transcript_id "Ledus.S1G052700.t1"; gene_id "Ledus.S1G052700"
Ledus.S1	AUGUSTUS	stop_codon	5930086	5930088	.	-	0	transcript_id "Ledus.S1G052700.t1"; gene_id "Ledus.S1G052700"
Ledus.S1	AUGUSTUS	CDS	5930089	5930550	0.52	-	0	transcript_id "Ledus.S1G052700.t1"; gene_id "Ledus.S1G052700"
Ledus.S1	AUGUSTUS	exon	5930089	5930550	.	-	.	transcript_id "Ledus.S1G052700.t1"; gene_id "Ledus.S1G052700"
Ledus.S1	AUGUSTUS	start_codon	5930548	5930550	.	-	0	transcript_id "Ledus.S1G052700.t1"; gene_id "Ledus.S1G052700"
# This transcript jg10292.t2 is derived from g11322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10293.t1 is derived from g11323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14103727	14104629	.	-	.	Ledus.S3G177000
Ledus.S3	AUGUSTUS	transcript	14103727	14104629	.	-	.	transcript_id "Ledus.S3G177000.t1"; gene_id "Ledus.S3G177000"
Ledus.S3	AUGUSTUS	stop_codon	14103724	14103726	.	-	0	transcript_id "Ledus.S3G177000.t1"; gene_id "Ledus.S3G177000"
Ledus.S3	AUGUSTUS	CDS	14103727	14104074	1	-	0	transcript_id "Ledus.S3G177000.t1"; gene_id "Ledus.S3G177000"
Ledus.S3	AUGUSTUS	exon	14103727	14104074	.	-	.	transcript_id "Ledus.S3G177000.t1"; gene_id "Ledus.S3G177000"
Ledus.S3	AUGUSTUS	intron	14104075	14104171	.	-	.	transcript_id "Ledus.S3G177000.t1"; gene_id "Ledus.S3G177000"
Ledus.S3	AUGUSTUS	CDS	14104172	14104299	1	-	2	transcript_id "Ledus.S3G177000.t1"; gene_id "Ledus.S3G177000"
Ledus.S3	AUGUSTUS	exon	14104172	14104299	.	-	.	transcript_id "Ledus.S3G177000.t1"; gene_id "Ledus.S3G177000"
Ledus.S3	AUGUSTUS	intron	14104300	14104394	.	-	.	transcript_id "Ledus.S3G177000.t1"; gene_id "Ledus.S3G177000"
Ledus.S3	AUGUSTUS	CDS	14104395	14104629	0.94	-	0	transcript_id "Ledus.S3G177000.t1"; gene_id "Ledus.S3G177000"
Ledus.S3	AUGUSTUS	exon	14104395	14104629	.	-	.	transcript_id "Ledus.S3G177000.t1"; gene_id "Ledus.S3G177000"
Ledus.S3	AUGUSTUS	start_codon	14104627	14104629	.	-	0	transcript_id "Ledus.S3G177000.t1"; gene_id "Ledus.S3G177000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10011.t1 is derived from g11041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11859607	11861903	.	+	.	Ledus.S3G148800
Ledus.S3	AUGUSTUS	transcript	11859607	11861903	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	start_codon	11859607	11859609	.	+	0	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	CDS	11859607	11859691	1	+	0	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	exon	11859607	11859691	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	intron	11859692	11859791	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	CDS	11859792	11859934	1	+	2	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	exon	11859792	11859934	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	intron	11859935	11860012	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	CDS	11860013	11860166	1	+	0	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	exon	11860013	11860166	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	intron	11860167	11860247	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	CDS	11860248	11860477	1	+	2	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	exon	11860248	11860477	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	intron	11860478	11860560	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	CDS	11860561	11860650	1	+	0	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	exon	11860561	11860650	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	intron	11860651	11860743	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	CDS	11860744	11860917	1	+	0	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	exon	11860744	11860917	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	intron	11860918	11861014	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	CDS	11861015	11861152	1	+	0	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	exon	11861015	11861152	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	intron	11861153	11861258	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	CDS	11861259	11861396	0.99	+	0	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	exon	11861259	11861396	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	intron	11861397	11861487	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	CDS	11861488	11861549	1	+	0	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	exon	11861488	11861549	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	intron	11861550	11861632	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	CDS	11861633	11861903	0.99	+	1	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	exon	11861633	11861903	.	+	.	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
Ledus.S3	AUGUSTUS	stop_codon	11861904	11861906	.	+	0	transcript_id "Ledus.S3G148800.t1"; gene_id "Ledus.S3G148800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4192.t1 is derived from g1628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15267311	15271815	.	-	.	Ledus.S1G161300
Ledus.S1	AUGUSTUS	transcript	15267311	15271815	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	stop_codon	15267308	15267310	.	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15267311	15267358	0.99	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15267311	15267358	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15267359	15267443	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15267444	15267590	1	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15267444	15267590	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15267591	15267705	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15267706	15267799	1	-	1	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15267706	15267799	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15267800	15267873	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15267874	15267968	1	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15267874	15267968	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15267969	15268046	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15268047	15268130	1	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15268047	15268130	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15268131	15268207	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15268208	15268376	1	-	1	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15268208	15268376	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15268377	15268471	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15268472	15268578	1	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15268472	15268578	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15268579	15268669	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15268670	15268765	1	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15268670	15268765	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15268766	15268852	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15268853	15268930	1	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15268853	15268930	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15268931	15269024	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15269025	15269090	1	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15269025	15269090	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15269091	15269222	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15269223	15269304	1	-	1	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15269223	15269304	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15269305	15269435	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15269436	15269632	1	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15269436	15269632	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15269633	15269767	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15269768	15269939	1	-	1	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15269768	15269939	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15269940	15270084	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15270085	15270191	1	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15270085	15270191	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15270192	15270273	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15270274	15270360	1	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15270274	15270360	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15270361	15270550	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15270551	15270632	1	-	1	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15270551	15270632	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15270633	15270748	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15270749	15270882	0.96	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15270749	15270882	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15270883	15270996	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15270997	15271093	1	-	1	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15270997	15271093	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15271094	15271189	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15271190	15271267	1	-	1	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15271190	15271267	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15271268	15271362	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15271363	15271542	1	-	1	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15271363	15271542	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	intron	15271543	15271729	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	CDS	15271730	15271815	0.62	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	exon	15271730	15271815	.	-	.	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
Ledus.S1	AUGUSTUS	start_codon	15271813	15271815	.	-	0	transcript_id "Ledus.S1G161300.t1"; gene_id "Ledus.S1G161300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10550.t1 is derived from g11580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16065523	16068136	.	-	.	Ledus.S3G202700
Ledus.S3	AUGUSTUS	transcript	16065523	16068136	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	stop_codon	16065520	16065522	.	-	0	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	CDS	16065523	16065680	1	-	2	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	exon	16065523	16065680	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	intron	16065681	16065778	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	CDS	16065779	16065887	1	-	0	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	exon	16065779	16065887	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	intron	16065888	16066024	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	CDS	16066025	16066252	0.92	-	0	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	exon	16066025	16066252	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	intron	16066253	16066350	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	CDS	16066351	16066551	1	-	0	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	exon	16066351	16066551	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	intron	16066552	16066693	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	CDS	16066694	16066883	1	-	1	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	exon	16066694	16066883	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	intron	16066884	16067036	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	CDS	16067037	16067152	1	-	0	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	exon	16067037	16067152	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	intron	16067153	16067302	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	CDS	16067303	16067389	0.8	-	0	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	exon	16067303	16067389	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	intron	16067390	16067498	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	CDS	16067499	16067619	0.96	-	1	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	exon	16067499	16067619	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	intron	16067620	16067708	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	CDS	16067709	16067834	1	-	1	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	exon	16067709	16067834	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	intron	16067835	16067920	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	CDS	16067921	16067958	0.96	-	0	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	exon	16067921	16067958	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	intron	16067959	16068028	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	CDS	16068029	16068136	0.95	-	0	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	exon	16068029	16068136	.	-	.	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
Ledus.S3	AUGUSTUS	start_codon	16068134	16068136	.	-	0	transcript_id "Ledus.S3G202700.t1"; gene_id "Ledus.S3G202700"
# This transcript jg6999.t2 is derived from g6530.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7000.t1 is derived from g6531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	733420	734649	.	-	.	Ledus.C7G006100
Ledus.C7	AUGUSTUS	transcript	733420	734649	.	-	.	transcript_id "Ledus.C7G006100.t1"; gene_id "Ledus.C7G006100"
Ledus.C7	AUGUSTUS	stop_codon	733417	733419	.	-	0	transcript_id "Ledus.C7G006100.t1"; gene_id "Ledus.C7G006100"
Ledus.C7	AUGUSTUS	CDS	733420	734649	0.95	-	0	transcript_id "Ledus.C7G006100.t1"; gene_id "Ledus.C7G006100"
Ledus.C7	AUGUSTUS	exon	733420	734649	.	-	.	transcript_id "Ledus.C7G006100.t1"; gene_id "Ledus.C7G006100"
Ledus.C7	AUGUSTUS	start_codon	734647	734649	.	-	0	transcript_id "Ledus.C7G006100.t1"; gene_id "Ledus.C7G006100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9739.t1 is derived from g10769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9505605	9514295	.	+	.	Ledus.S3G121600
Ledus.S3	AUGUSTUS	transcript	9505605	9514295	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	start_codon	9505605	9505607	.	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9505605	9505637	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9505605	9505637	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9505638	9506004	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9506005	9506055	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9506005	9506055	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9506056	9506150	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9506151	9506184	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9506151	9506184	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9506185	9506341	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9506342	9506359	1	+	2	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9506342	9506359	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9506360	9506491	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9506492	9506628	1	+	2	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9506492	9506628	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9506629	9506753	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9506754	9506828	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9506754	9506828	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9506829	9507708	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9507709	9507754	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9507709	9507754	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9507755	9507918	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9507919	9507978	0.99	+	2	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9507919	9507978	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9507979	9508080	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9508081	9508161	0.91	+	2	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9508081	9508161	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9508162	9508362	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9508363	9508448	1	+	2	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9508363	9508448	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9508449	9508586	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9508587	9508688	0.66	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9508587	9508688	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9508689	9508806	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9508807	9508860	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9508807	9508860	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9508861	9509029	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9509030	9509131	0.97	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9509030	9509131	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9509132	9509250	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9509251	9509309	0.98	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9509251	9509309	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9509310	9509468	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9509469	9509613	0.99	+	1	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9509469	9509613	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9509614	9509719	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9509720	9509827	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9509720	9509827	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9509828	9509969	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9509970	9510122	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9509970	9510122	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9510123	9510207	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9510208	9510312	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9510208	9510312	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9510313	9510523	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9510524	9510720	0.99	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9510524	9510720	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9510721	9510868	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9510869	9510980	1	+	1	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9510869	9510980	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9510981	9511087	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9511088	9511186	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9511088	9511186	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9511187	9511391	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9511392	9511537	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9511392	9511537	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9511538	9511624	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9511625	9511682	1	+	1	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9511625	9511682	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9511683	9511811	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9511812	9511904	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9511812	9511904	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9511905	9512120	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9512121	9512171	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9512121	9512171	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9512172	9512264	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9512265	9512396	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9512265	9512396	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9512397	9512533	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9512534	9512635	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9512534	9512635	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9512636	9512728	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9512729	9512783	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9512729	9512783	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9512784	9512920	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9512921	9513006	1	+	2	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9512921	9513006	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9513007	9513232	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9513233	9513381	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9513233	9513381	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9513382	9513520	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9513521	9513626	1	+	1	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9513521	9513626	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9513627	9513814	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9513815	9513868	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9513815	9513868	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9513869	9514047	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9514048	9514096	1	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9514048	9514096	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	intron	9514097	9514230	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	CDS	9514231	9514295	1	+	2	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	exon	9514231	9514295	.	+	.	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
Ledus.S3	AUGUSTUS	stop_codon	9514296	9514298	.	+	0	transcript_id "Ledus.S3G121600.t1"; gene_id "Ledus.S3G121600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5561.t1 is derived from g3000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25156014	25156975	.	-	.	Ledus.S1G298200
Ledus.S1	AUGUSTUS	transcript	25156014	25156975	.	-	.	transcript_id "Ledus.S1G298200.t1"; gene_id "Ledus.S1G298200"
Ledus.S1	AUGUSTUS	stop_codon	25156011	25156013	.	-	0	transcript_id "Ledus.S1G298200.t1"; gene_id "Ledus.S1G298200"
Ledus.S1	AUGUSTUS	CDS	25156014	25156313	1	-	0	transcript_id "Ledus.S1G298200.t1"; gene_id "Ledus.S1G298200"
Ledus.S1	AUGUSTUS	exon	25156014	25156313	.	-	.	transcript_id "Ledus.S1G298200.t1"; gene_id "Ledus.S1G298200"
Ledus.S1	AUGUSTUS	intron	25156314	25156430	.	-	.	transcript_id "Ledus.S1G298200.t1"; gene_id "Ledus.S1G298200"
Ledus.S1	AUGUSTUS	CDS	25156431	25156619	1	-	0	transcript_id "Ledus.S1G298200.t1"; gene_id "Ledus.S1G298200"
Ledus.S1	AUGUSTUS	exon	25156431	25156619	.	-	.	transcript_id "Ledus.S1G298200.t1"; gene_id "Ledus.S1G298200"
Ledus.S1	AUGUSTUS	intron	25156620	25156801	.	-	.	transcript_id "Ledus.S1G298200.t1"; gene_id "Ledus.S1G298200"
Ledus.S1	AUGUSTUS	CDS	25156802	25156975	0.98	-	0	transcript_id "Ledus.S1G298200.t1"; gene_id "Ledus.S1G298200"
Ledus.S1	AUGUSTUS	exon	25156802	25156975	.	-	.	transcript_id "Ledus.S1G298200.t1"; gene_id "Ledus.S1G298200"
Ledus.S1	AUGUSTUS	start_codon	25156973	25156975	.	-	0	transcript_id "Ledus.S1G298200.t1"; gene_id "Ledus.S1G298200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5661.t1 is derived from g3100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25687414	25690005	.	-	.	Ledus.S1G308200
Ledus.S1	AUGUSTUS	transcript	25687414	25690005	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	stop_codon	25687411	25687413	.	-	0	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25687414	25687455	1	-	0	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25687414	25687455	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25687456	25687539	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25687540	25687641	1	-	0	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25687540	25687641	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25687642	25687749	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25687750	25687873	1	-	1	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25687750	25687873	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25687874	25687976	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25687977	25688062	1	-	0	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25687977	25688062	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25688063	25688156	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25688157	25688224	1	-	2	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25688157	25688224	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25688225	25688325	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25688326	25688344	1	-	0	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25688326	25688344	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25688345	25688489	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25688490	25688603	1	-	0	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25688490	25688603	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25688604	25688740	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25688741	25688809	1	-	0	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25688741	25688809	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25688810	25688906	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25688907	25688965	1	-	2	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25688907	25688965	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25688966	25689095	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25689096	25689174	1	-	0	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25689096	25689174	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25689175	25689322	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25689323	25689390	1	-	2	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25689323	25689390	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25689391	25689472	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25689473	25689580	1	-	2	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25689473	25689580	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25689581	25689665	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25689666	25690005	0.59	-	0	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25689666	25690005	.	-	.	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	start_codon	25690003	25690005	.	-	0	transcript_id "Ledus.S1G308200.t1"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	transcript	25687414	25690005	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	stop_codon	25687411	25687413	.	-	0	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25687414	25687455	1	-	0	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25687414	25687455	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25687456	25687539	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25687540	25687654	0.89	-	1	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25687540	25687654	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25687655	25687749	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25687750	25687827	0.89	-	1	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25687750	25687827	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25687828	25687976	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25687977	25688062	1	-	0	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25687977	25688062	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25688063	25688156	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25688157	25688224	1	-	2	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25688157	25688224	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25688225	25688325	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25688326	25688344	1	-	0	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25688326	25688344	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25688345	25688489	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25688490	25688603	1	-	0	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25688490	25688603	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25688604	25688740	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25688741	25688809	1	-	0	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25688741	25688809	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25688810	25688906	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25688907	25688965	1	-	2	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25688907	25688965	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25688966	25689095	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25689096	25689174	1	-	0	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25689096	25689174	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25689175	25689322	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25689323	25689390	1	-	2	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25689323	25689390	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25689391	25689472	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25689473	25689580	1	-	2	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25689473	25689580	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	intron	25689581	25689665	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	CDS	25689666	25690005	0.57	-	0	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	exon	25689666	25690005	.	-	.	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
Ledus.S1	AUGUSTUS	start_codon	25690003	25690005	.	-	0	transcript_id "Ledus.S1G308200.t2"; gene_id "Ledus.S1G308200"
# This transcript jg6997.t1 is derived from g6528.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	636301	638408	.	-	.	Ledus.C7G005800
Ledus.C7	AUGUSTUS	transcript	636301	638408	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	stop_codon	636298	636300	.	-	0	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	CDS	636301	636351	0.69	-	0	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	exon	636301	636351	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	intron	636352	636544	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	CDS	636545	636616	1	-	0	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	exon	636545	636616	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	intron	636617	636702	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	CDS	636703	636758	1	-	2	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	exon	636703	636758	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	intron	636759	637144	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	CDS	637145	637288	0.34	-	2	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	exon	637145	637288	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	intron	637289	637708	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	CDS	637709	637746	0.49	-	1	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	exon	637709	637746	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	intron	637747	637896	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	CDS	637897	637932	0.61	-	1	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	exon	637897	637932	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	intron	637933	638031	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	CDS	638032	638086	0.33	-	2	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	exon	638032	638086	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	intron	638087	638275	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	CDS	638276	638408	0.73	-	0	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	exon	638276	638408	.	-	.	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
Ledus.C7	AUGUSTUS	start_codon	638406	638408	.	-	0	transcript_id "Ledus.C7G005800.t1"; gene_id "Ledus.C7G005800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2200.t1 is derived from g9063.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15947590	15949827	.	+	.	Ledus.S2G208200
Ledus.S2	AUGUSTUS	transcript	15947590	15948492	.	+	.	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	start_codon	15947590	15947592	.	+	0	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	CDS	15947590	15947605	0.44	+	0	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	exon	15947590	15947605	.	+	.	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	intron	15947606	15947763	.	+	.	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	CDS	15947764	15947865	0.87	+	2	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	exon	15947764	15947865	.	+	.	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	intron	15947866	15948082	.	+	.	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	CDS	15948083	15948265	0.89	+	2	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	exon	15948083	15948265	.	+	.	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	intron	15948266	15948361	.	+	.	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	CDS	15948362	15948492	1	+	2	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	exon	15948362	15948492	.	+	.	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	stop_codon	15948647	15948649	.	+	0	transcript_id "Ledus.S2G208200.t1"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	transcript	15947590	15949827	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	start_codon	15947590	15947592	.	+	0	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	CDS	15947590	15947605	0.35	+	0	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	exon	15947590	15947605	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	intron	15947606	15947763	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	CDS	15947764	15947865	0.8	+	2	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	exon	15947764	15947865	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	intron	15947866	15948082	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	CDS	15948083	15948265	0.92	+	2	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	exon	15948083	15948265	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	intron	15948266	15948361	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	CDS	15948362	15948492	1	+	2	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	exon	15948362	15948492	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	intron	15948493	15948701	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	CDS	15948702	15948744	1	+	0	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	exon	15948702	15948744	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	intron	15948745	15948858	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	CDS	15948859	15949308	0.99	+	2	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	exon	15948859	15949308	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	intron	15949309	15949387	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	CDS	15949388	15949474	1	+	2	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	exon	15949388	15949474	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	intron	15949475	15949552	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	CDS	15949553	15949827	0.84	+	2	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	exon	15949553	15949827	.	+	.	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
Ledus.S2	AUGUSTUS	stop_codon	15949828	15949830	.	+	0	transcript_id "Ledus.S2G208200.t2"; gene_id "Ledus.S2G208200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg763.t1 is derived from g7624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4862834	4866418	.	-	.	Ledus.S2G064500
Ledus.S2	AUGUSTUS	transcript	4862834	4866390	.	-	.	transcript_id "Ledus.S2G064500.t1"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	stop_codon	4862831	4862833	.	-	0	transcript_id "Ledus.S2G064500.t1"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	CDS	4862834	4865915	0.98	-	1	transcript_id "Ledus.S2G064500.t1"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	exon	4862834	4865915	.	-	.	transcript_id "Ledus.S2G064500.t1"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	intron	4865916	4866091	.	-	.	transcript_id "Ledus.S2G064500.t1"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	CDS	4866092	4866162	1	-	0	transcript_id "Ledus.S2G064500.t1"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	exon	4866092	4866162	.	-	.	transcript_id "Ledus.S2G064500.t1"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	intron	4866163	4866255	.	-	.	transcript_id "Ledus.S2G064500.t1"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	CDS	4866256	4866390	1	-	0	transcript_id "Ledus.S2G064500.t1"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	exon	4866256	4866390	.	-	.	transcript_id "Ledus.S2G064500.t1"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	start_codon	4866388	4866390	.	-	0	transcript_id "Ledus.S2G064500.t1"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	transcript	4862834	4866418	.	-	.	transcript_id "Ledus.S2G064500.t2"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	stop_codon	4862831	4862833	.	-	0	transcript_id "Ledus.S2G064500.t2"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	CDS	4862834	4866004	0.96	-	0	transcript_id "Ledus.S2G064500.t2"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	exon	4862834	4866004	.	-	.	transcript_id "Ledus.S2G064500.t2"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	intron	4866005	4866091	.	-	.	transcript_id "Ledus.S2G064500.t2"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	CDS	4866092	4866162	1	-	2	transcript_id "Ledus.S2G064500.t2"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	exon	4866092	4866162	.	-	.	transcript_id "Ledus.S2G064500.t2"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	intron	4866163	4866255	.	-	.	transcript_id "Ledus.S2G064500.t2"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	CDS	4866256	4866418	1	-	0	transcript_id "Ledus.S2G064500.t2"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	exon	4866256	4866418	.	-	.	transcript_id "Ledus.S2G064500.t2"; gene_id "Ledus.S2G064500"
Ledus.S2	AUGUSTUS	start_codon	4866416	4866418	.	-	0	transcript_id "Ledus.S2G064500.t2"; gene_id "Ledus.S2G064500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12478.t1 is derived from g6099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12287144	12287446	.	-	.	Ledus.S4G163400
Ledus.S4	AUGUSTUS	transcript	12287144	12287446	.	-	.	transcript_id "Ledus.S4G163400.t1"; gene_id "Ledus.S4G163400"
Ledus.S4	AUGUSTUS	stop_codon	12287141	12287143	.	-	0	transcript_id "Ledus.S4G163400.t1"; gene_id "Ledus.S4G163400"
Ledus.S4	AUGUSTUS	CDS	12287144	12287446	0.66	-	0	transcript_id "Ledus.S4G163400.t1"; gene_id "Ledus.S4G163400"
Ledus.S4	AUGUSTUS	exon	12287144	12287446	.	-	.	transcript_id "Ledus.S4G163400.t1"; gene_id "Ledus.S4G163400"
Ledus.S4	AUGUSTUS	start_codon	12287444	12287446	.	-	0	transcript_id "Ledus.S4G163400.t1"; gene_id "Ledus.S4G163400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8629.t1 is derived from g9659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	904311	904508	.	-	.	Ledus.S3G010600
Ledus.S3	AUGUSTUS	transcript	904311	904508	.	-	.	transcript_id "Ledus.S3G010600.t1"; gene_id "Ledus.S3G010600"
Ledus.S3	AUGUSTUS	stop_codon	904308	904310	.	-	0	transcript_id "Ledus.S3G010600.t1"; gene_id "Ledus.S3G010600"
Ledus.S3	AUGUSTUS	CDS	904311	904508	0.79	-	0	transcript_id "Ledus.S3G010600.t1"; gene_id "Ledus.S3G010600"
Ledus.S3	AUGUSTUS	exon	904311	904508	.	-	.	transcript_id "Ledus.S3G010600.t1"; gene_id "Ledus.S3G010600"
Ledus.S3	AUGUSTUS	start_codon	904506	904508	.	-	0	transcript_id "Ledus.S3G010600.t1"; gene_id "Ledus.S3G010600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4964.t1 is derived from g2402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20902082	20902789	.	-	.	Ledus.S1G238500
Ledus.S1	AUGUSTUS	transcript	20902082	20902789	.	-	.	transcript_id "Ledus.S1G238500.t1"; gene_id "Ledus.S1G238500"
Ledus.S1	AUGUSTUS	stop_codon	20902079	20902081	.	-	0	transcript_id "Ledus.S1G238500.t1"; gene_id "Ledus.S1G238500"
Ledus.S1	AUGUSTUS	CDS	20902082	20902789	0.55	-	0	transcript_id "Ledus.S1G238500.t1"; gene_id "Ledus.S1G238500"
Ledus.S1	AUGUSTUS	exon	20902082	20902789	.	-	.	transcript_id "Ledus.S1G238500.t1"; gene_id "Ledus.S1G238500"
Ledus.S1	AUGUSTUS	start_codon	20902787	20902789	.	-	0	transcript_id "Ledus.S1G238500.t1"; gene_id "Ledus.S1G238500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2371.t1 is derived from g9234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17699796	17700811	.	+	.	Ledus.S2G225300
Ledus.S2	AUGUSTUS	transcript	17699796	17700811	.	+	.	transcript_id "Ledus.S2G225300.t1"; gene_id "Ledus.S2G225300"
Ledus.S2	AUGUSTUS	start_codon	17699796	17699798	.	+	0	transcript_id "Ledus.S2G225300.t1"; gene_id "Ledus.S2G225300"
Ledus.S2	AUGUSTUS	CDS	17699796	17699865	0.79	+	0	transcript_id "Ledus.S2G225300.t1"; gene_id "Ledus.S2G225300"
Ledus.S2	AUGUSTUS	exon	17699796	17699865	.	+	.	transcript_id "Ledus.S2G225300.t1"; gene_id "Ledus.S2G225300"
Ledus.S2	AUGUSTUS	intron	17699866	17700614	.	+	.	transcript_id "Ledus.S2G225300.t1"; gene_id "Ledus.S2G225300"
Ledus.S2	AUGUSTUS	CDS	17700615	17700811	0.85	+	2	transcript_id "Ledus.S2G225300.t1"; gene_id "Ledus.S2G225300"
Ledus.S2	AUGUSTUS	exon	17700615	17700811	.	+	.	transcript_id "Ledus.S2G225300.t1"; gene_id "Ledus.S2G225300"
Ledus.S2	AUGUSTUS	stop_codon	17700812	17700814	.	+	0	transcript_id "Ledus.S2G225300.t1"; gene_id "Ledus.S2G225300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg114.t1 is derived from g9527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	508909	511286	.	+	.	Ledus.C8G007400
Ledus.C8	AUGUSTUS	transcript	508909	511286	.	+	.	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	start_codon	508909	508911	.	+	0	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	CDS	508909	509178	0.55	+	0	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	exon	508909	509178	.	+	.	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	intron	509179	509300	.	+	.	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	CDS	509301	509513	1	+	0	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	exon	509301	509513	.	+	.	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	intron	509514	509610	.	+	.	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	CDS	509611	509766	1	+	0	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	exon	509611	509766	.	+	.	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	intron	509767	509892	.	+	.	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	CDS	509893	509954	1	+	0	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	exon	509893	509954	.	+	.	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	intron	509955	510040	.	+	.	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	CDS	510041	510378	1	+	1	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	exon	510041	510378	.	+	.	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	intron	510379	510507	.	+	.	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	CDS	510508	511286	1	+	2	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	exon	510508	511286	.	+	.	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
Ledus.C8	AUGUSTUS	stop_codon	511287	511289	.	+	0	transcript_id "Ledus.C8G007400.t1"; gene_id "Ledus.C8G007400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6943.t1 is derived from g6474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	70545	70775	.	-	.	Ledus.C7G000400
Ledus.C7	AUGUSTUS	transcript	70545	70775	.	-	.	transcript_id "Ledus.C7G000400.t1"; gene_id "Ledus.C7G000400"
Ledus.C7	AUGUSTUS	stop_codon	70542	70544	.	-	0	transcript_id "Ledus.C7G000400.t1"; gene_id "Ledus.C7G000400"
Ledus.C7	AUGUSTUS	CDS	70545	70775	0.94	-	0	transcript_id "Ledus.C7G000400.t1"; gene_id "Ledus.C7G000400"
Ledus.C7	AUGUSTUS	exon	70545	70775	.	-	.	transcript_id "Ledus.C7G000400.t1"; gene_id "Ledus.C7G000400"
Ledus.C7	AUGUSTUS	start_codon	70773	70775	.	-	0	transcript_id "Ledus.C7G000400.t1"; gene_id "Ledus.C7G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg158.t1 is derived from g7019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	394045	397295	.	-	.	Ledus.S2G004000
Ledus.S2	AUGUSTUS	transcript	394045	397295	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	stop_codon	394042	394044	.	-	0	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	394045	394278	0.98	-	0	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	394045	394278	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	intron	394279	394374	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	394375	394524	1	-	0	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	394375	394524	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	intron	394525	394614	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	394615	394735	1	-	1	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	394615	394735	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	intron	394736	394829	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	394830	394939	1	-	0	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	394830	394939	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	intron	394940	395034	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	395035	395253	1	-	0	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	395035	395253	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	intron	395254	395345	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	395346	395467	1	-	2	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	395346	395467	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	intron	395468	395671	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	395672	395783	0.76	-	0	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	395672	395783	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	intron	395784	395885	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	395886	396078	0.76	-	1	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	395886	396078	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	intron	396079	396172	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	396173	396258	1	-	0	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	396173	396258	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	intron	396259	396371	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	396372	396567	1	-	1	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	396372	396567	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	intron	396568	396774	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	396775	396885	1	-	1	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	396775	396885	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	intron	396886	397033	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	397034	397100	1	-	2	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	397034	397100	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	intron	397101	397180	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	CDS	397181	397295	0.74	-	0	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	exon	397181	397295	.	-	.	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
Ledus.S2	AUGUSTUS	start_codon	397293	397295	.	-	0	transcript_id "Ledus.S2G004000.t1"; gene_id "Ledus.S2G004000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5384.t1 is derived from g2823.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23957207	23961668	.	-	.	Ledus.S1G280500
Ledus.S1	AUGUSTUS	transcript	23957207	23961668	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	stop_codon	23957204	23957206	.	-	0	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23957207	23957280	0.89	-	2	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23957207	23957280	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23957281	23957382	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23957383	23957757	0.9	-	2	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23957383	23957757	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23957758	23958115	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23958116	23958160	0.84	-	2	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23958116	23958160	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23958161	23958249	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23958250	23958355	0.85	-	0	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23958250	23958355	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23958356	23958453	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23958454	23958512	0.67	-	2	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23958454	23958512	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23958513	23958590	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23958591	23958656	0.96	-	2	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23958591	23958656	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23958657	23958803	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23958804	23959079	1	-	2	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23958804	23959079	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23959080	23959176	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23959177	23959261	1	-	0	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23959177	23959261	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23959262	23959347	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23959348	23959483	1	-	1	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23959348	23959483	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23959484	23959580	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23959581	23959732	1	-	0	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23959581	23959732	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23959733	23959933	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23959934	23960060	1	-	1	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23959934	23960060	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23960061	23960217	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23960218	23960357	1	-	0	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23960218	23960357	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23960358	23960560	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23960561	23960626	1	-	0	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23960561	23960626	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23960627	23960949	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23960950	23961450	0.96	-	0	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23960950	23961450	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23961451	23961566	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23961567	23961668	0.75	-	0	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23961567	23961668	.	-	.	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	start_codon	23961666	23961668	.	-	0	transcript_id "Ledus.S1G280500.t1"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	transcript	23958355	23961668	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	stop_codon	23958352	23958354	.	-	0	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23958355	23958355	0.36	-	1	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23958355	23958355	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23958356	23958453	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23958454	23958656	0.36	-	0	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23958454	23958656	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23958657	23958780	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23958781	23959079	0.47	-	2	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23958781	23959079	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23959080	23959176	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23959177	23959261	1	-	0	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23959177	23959261	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23959262	23959347	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23959348	23959483	1	-	1	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23959348	23959483	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23959484	23959580	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23959581	23959732	1	-	0	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23959581	23959732	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23959733	23959933	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23959934	23960060	1	-	1	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23959934	23960060	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23960061	23960217	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23960218	23960357	1	-	0	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23960218	23960357	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23960358	23960560	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23960561	23960626	1	-	0	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23960561	23960626	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23960627	23960949	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23960950	23961450	0.88	-	0	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23960950	23961450	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	intron	23961451	23961566	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	CDS	23961567	23961668	0.78	-	0	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	exon	23961567	23961668	.	-	.	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
Ledus.S1	AUGUSTUS	start_codon	23961666	23961668	.	-	0	transcript_id "Ledus.S1G280500.t2"; gene_id "Ledus.S1G280500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1628.t1 is derived from g8489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11478986	11480518	.	-	.	Ledus.S2G151000
Ledus.S2	AUGUSTUS	transcript	11478986	11480518	.	-	.	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	stop_codon	11478983	11478985	.	-	0	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	CDS	11478986	11479160	0.66	-	1	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	exon	11478986	11479160	.	-	.	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	intron	11479161	11479280	.	-	.	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	CDS	11479281	11479490	0.6	-	1	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	exon	11479281	11479490	.	-	.	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	intron	11479491	11479628	.	-	.	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	CDS	11479629	11479761	1	-	2	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	exon	11479629	11479761	.	-	.	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	intron	11479762	11479842	.	-	.	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	CDS	11479843	11480518	0.86	-	0	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	exon	11479843	11480518	.	-	.	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
Ledus.S2	AUGUSTUS	start_codon	11480516	11480518	.	-	0	transcript_id "Ledus.S2G151000.t1"; gene_id "Ledus.S2G151000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg392.t1 is derived from g7253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2209569	2210276	.	+	.	Ledus.S2G027400
Ledus.S2	AUGUSTUS	transcript	2209569	2210276	.	+	.	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	start_codon	2209569	2209571	.	+	0	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	CDS	2209569	2209632	1	+	0	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	exon	2209569	2209632	.	+	.	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	intron	2209633	2209706	.	+	.	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	CDS	2209707	2209767	0.65	+	2	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	exon	2209707	2209767	.	+	.	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	intron	2209768	2209883	.	+	.	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	CDS	2209884	2209959	0.49	+	1	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	exon	2209884	2209959	.	+	.	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	intron	2209960	2210051	.	+	.	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	CDS	2210052	2210276	0.34	+	0	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	exon	2210052	2210276	.	+	.	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
Ledus.S2	AUGUSTUS	stop_codon	2210277	2210279	.	+	0	transcript_id "Ledus.S2G027400.t1"; gene_id "Ledus.S2G027400"
# This transcript jg8062.t2 is derived from g12733.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8063.t1 is derived from g12734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9012419	9012913	.	-	.	Ledus.S5G084100
Ledus.S5	AUGUSTUS	transcript	9012419	9012913	.	-	.	transcript_id "Ledus.S5G084100.t1"; gene_id "Ledus.S5G084100"
Ledus.S5	AUGUSTUS	stop_codon	9012416	9012418	.	-	0	transcript_id "Ledus.S5G084100.t1"; gene_id "Ledus.S5G084100"
Ledus.S5	AUGUSTUS	CDS	9012419	9012699	1	-	2	transcript_id "Ledus.S5G084100.t1"; gene_id "Ledus.S5G084100"
Ledus.S5	AUGUSTUS	exon	9012419	9012699	.	-	.	transcript_id "Ledus.S5G084100.t1"; gene_id "Ledus.S5G084100"
Ledus.S5	AUGUSTUS	intron	9012700	9012789	.	-	.	transcript_id "Ledus.S5G084100.t1"; gene_id "Ledus.S5G084100"
Ledus.S5	AUGUSTUS	CDS	9012790	9012913	0.74	-	0	transcript_id "Ledus.S5G084100.t1"; gene_id "Ledus.S5G084100"
Ledus.S5	AUGUSTUS	exon	9012790	9012913	.	-	.	transcript_id "Ledus.S5G084100.t1"; gene_id "Ledus.S5G084100"
Ledus.S5	AUGUSTUS	start_codon	9012911	9012913	.	-	0	transcript_id "Ledus.S5G084100.t1"; gene_id "Ledus.S5G084100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5503.t1 is derived from g2942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24649587	24651809	.	-	.	Ledus.S1G292400
Ledus.S1	AUGUSTUS	transcript	24649587	24651809	.	-	.	transcript_id "Ledus.S1G292400.t1"; gene_id "Ledus.S1G292400"
Ledus.S1	AUGUSTUS	stop_codon	24649584	24649586	.	-	0	transcript_id "Ledus.S1G292400.t1"; gene_id "Ledus.S1G292400"
Ledus.S1	AUGUSTUS	CDS	24649587	24651809	0.96	-	0	transcript_id "Ledus.S1G292400.t1"; gene_id "Ledus.S1G292400"
Ledus.S1	AUGUSTUS	exon	24649587	24651809	.	-	.	transcript_id "Ledus.S1G292400.t1"; gene_id "Ledus.S1G292400"
Ledus.S1	AUGUSTUS	start_codon	24651807	24651809	.	-	0	transcript_id "Ledus.S1G292400.t1"; gene_id "Ledus.S1G292400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1277.t1 is derived from g8138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9028884	9031435	.	+	.	Ledus.S2G115900
Ledus.S2	AUGUSTUS	transcript	9028884	9031435	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	start_codon	9028884	9028886	.	+	0	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	CDS	9028884	9029288	0.59	+	0	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	exon	9028884	9029288	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	intron	9029289	9029381	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	CDS	9029382	9029462	1	+	0	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	exon	9029382	9029462	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	intron	9029463	9029553	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	CDS	9029554	9029661	1	+	0	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	exon	9029554	9029661	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	intron	9029662	9029781	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	CDS	9029782	9029849	1	+	0	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	exon	9029782	9029849	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	intron	9029850	9029970	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	CDS	9029971	9030202	0.8	+	1	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	exon	9029971	9030202	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	intron	9030203	9030488	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	CDS	9030489	9030737	0.88	+	0	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	exon	9030489	9030737	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	intron	9030738	9030821	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	CDS	9030822	9030896	1	+	0	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	exon	9030822	9030896	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	intron	9030897	9030992	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	CDS	9030993	9031123	1	+	0	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	exon	9030993	9031123	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	intron	9031124	9031206	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	CDS	9031207	9031435	0.94	+	1	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	exon	9031207	9031435	.	+	.	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
Ledus.S2	AUGUSTUS	stop_codon	9031436	9031438	.	+	0	transcript_id "Ledus.S2G115900.t1"; gene_id "Ledus.S2G115900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4215.t1 is derived from g1651.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15610562	15612517	.	+	.	Ledus.S1G163600
Ledus.S1	AUGUSTUS	transcript	15610562	15612517	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	start_codon	15610562	15610564	.	+	0	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15610562	15610583	0.89	+	0	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15610562	15610583	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15610584	15610686	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15610687	15610707	0.88	+	2	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15610687	15610707	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15610708	15610799	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15610800	15610900	1	+	2	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15610800	15610900	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15610901	15610973	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15610974	15611031	1	+	0	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15610974	15611031	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15611032	15611104	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15611105	15611148	1	+	2	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15611105	15611148	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15611149	15611231	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15611232	15611312	1	+	0	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15611232	15611312	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15611313	15611377	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15611378	15611448	1	+	0	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15611378	15611448	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15611449	15611588	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15611589	15611699	1	+	1	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15611589	15611699	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15611700	15611801	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15611802	15611884	1	+	1	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15611802	15611884	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15611885	15612029	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15612030	15612084	0.97	+	2	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15612030	15612084	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15612085	15612145	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15612146	15612205	0.97	+	1	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15612146	15612205	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15612206	15612291	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15612292	15612375	1	+	1	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15612292	15612375	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15612376	15612465	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15612466	15612517	1	+	1	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15612466	15612517	.	+	.	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	stop_codon	15612518	15612520	.	+	0	transcript_id "Ledus.S1G163600.t1"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	transcript	15610562	15612517	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	start_codon	15610562	15610564	.	+	0	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15610562	15610583	0.86	+	0	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15610562	15610583	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15610584	15610686	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15610687	15610707	0.85	+	2	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15610687	15610707	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15610708	15610799	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15610800	15610900	1	+	2	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15610800	15610900	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15610901	15610973	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15610974	15611031	1	+	0	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15610974	15611031	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15611032	15611104	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15611105	15611148	1	+	2	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15611105	15611148	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15611149	15611231	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15611232	15611312	1	+	0	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15611232	15611312	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15611313	15611377	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15611378	15611448	1	+	0	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15611378	15611448	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15611449	15611588	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15611589	15611699	0.99	+	1	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15611589	15611699	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15611700	15611801	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15611802	15611884	0.99	+	1	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15611802	15611884	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15611885	15611988	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15611989	15612205	1	+	2	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15611989	15612205	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15612206	15612291	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15612292	15612375	1	+	1	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15612292	15612375	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	intron	15612376	15612465	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	CDS	15612466	15612517	0.99	+	1	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	exon	15612466	15612517	.	+	.	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
Ledus.S1	AUGUSTUS	stop_codon	15612518	15612520	.	+	0	transcript_id "Ledus.S1G163600.t2"; gene_id "Ledus.S1G163600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8199.t1 is derived from g12870.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9810233	9812002	.	-	.	Ledus.S5G097700
Ledus.S5	AUGUSTUS	transcript	9810233	9812002	.	-	.	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	stop_codon	9810230	9810232	.	-	0	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	CDS	9810233	9810624	1	-	2	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	exon	9810233	9810624	.	-	.	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	intron	9810625	9810705	.	-	.	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	CDS	9810706	9810940	1	-	0	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	exon	9810706	9810940	.	-	.	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	intron	9810941	9811052	.	-	.	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	CDS	9811053	9811267	0.99	-	2	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	exon	9811053	9811267	.	-	.	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	intron	9811268	9811354	.	-	.	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	CDS	9811355	9811843	0.99	-	2	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	exon	9811355	9811843	.	-	.	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	intron	9811844	9811992	.	-	.	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	CDS	9811993	9812002	0.99	-	0	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	exon	9811993	9812002	.	-	.	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
Ledus.S5	AUGUSTUS	start_codon	9812000	9812002	.	-	0	transcript_id "Ledus.S5G097700.t1"; gene_id "Ledus.S5G097700"
# This transcript jg9009.t2 is derived from g10039.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9010.t1 is derived from g10040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3858552	3859004	.	+	.	Ledus.S3G048700
Ledus.S3	AUGUSTUS	transcript	3858552	3859004	.	+	.	transcript_id "Ledus.S3G048700.t1"; gene_id "Ledus.S3G048700"
Ledus.S3	AUGUSTUS	start_codon	3858552	3858554	.	+	0	transcript_id "Ledus.S3G048700.t1"; gene_id "Ledus.S3G048700"
Ledus.S3	AUGUSTUS	CDS	3858552	3859004	1	+	0	transcript_id "Ledus.S3G048700.t1"; gene_id "Ledus.S3G048700"
Ledus.S3	AUGUSTUS	exon	3858552	3859004	.	+	.	transcript_id "Ledus.S3G048700.t1"; gene_id "Ledus.S3G048700"
Ledus.S3	AUGUSTUS	stop_codon	3859005	3859007	.	+	0	transcript_id "Ledus.S3G048700.t1"; gene_id "Ledus.S3G048700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg485.t1 is derived from g7346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2843842	2844232	.	+	.	Ledus.S2G036700
Ledus.S2	AUGUSTUS	transcript	2843842	2844232	.	+	.	transcript_id "Ledus.S2G036700.t1"; gene_id "Ledus.S2G036700"
Ledus.S2	AUGUSTUS	start_codon	2843842	2843844	.	+	0	transcript_id "Ledus.S2G036700.t1"; gene_id "Ledus.S2G036700"
Ledus.S2	AUGUSTUS	CDS	2843842	2844029	0.6	+	0	transcript_id "Ledus.S2G036700.t1"; gene_id "Ledus.S2G036700"
Ledus.S2	AUGUSTUS	exon	2843842	2844029	.	+	.	transcript_id "Ledus.S2G036700.t1"; gene_id "Ledus.S2G036700"
Ledus.S2	AUGUSTUS	intron	2844030	2844153	.	+	.	transcript_id "Ledus.S2G036700.t1"; gene_id "Ledus.S2G036700"
Ledus.S2	AUGUSTUS	CDS	2844154	2844232	0.54	+	1	transcript_id "Ledus.S2G036700.t1"; gene_id "Ledus.S2G036700"
Ledus.S2	AUGUSTUS	exon	2844154	2844232	.	+	.	transcript_id "Ledus.S2G036700.t1"; gene_id "Ledus.S2G036700"
Ledus.S2	AUGUSTUS	stop_codon	2844233	2844235	.	+	0	transcript_id "Ledus.S2G036700.t1"; gene_id "Ledus.S2G036700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8097.t1 is derived from g12768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9127421	9133086	.	+	.	Ledus.S5G087500
Ledus.S5	AUGUSTUS	transcript	9127421	9133086	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	start_codon	9127421	9127423	.	+	0	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9127421	9127783	0.96	+	0	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9127421	9127783	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	intron	9127784	9129660	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9129661	9129840	1	+	0	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9129661	9129840	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	intron	9129841	9129940	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9129941	9129995	1	+	0	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9129941	9129995	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	intron	9129996	9130163	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9130164	9130291	1	+	2	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9130164	9130291	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	intron	9130292	9130390	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9130391	9130474	1	+	0	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9130391	9130474	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	intron	9130475	9130618	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9130619	9130744	1	+	0	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9130619	9130744	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	intron	9130745	9130840	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9130841	9130936	0.66	+	0	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9130841	9130936	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	intron	9130937	9131221	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9131222	9131301	0.21	+	0	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9131222	9131301	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	intron	9131302	9131532	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9131533	9131603	0.31	+	1	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9131533	9131603	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	intron	9131604	9131972	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9131973	9132069	0.34	+	2	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9131973	9132069	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	intron	9132070	9132371	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9132372	9132420	0.88	+	1	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9132372	9132420	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	intron	9132421	9132576	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9132577	9132664	0.5	+	0	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9132577	9132664	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	intron	9132665	9133006	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	CDS	9133007	9133086	0.76	+	2	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	exon	9133007	9133086	.	+	.	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
Ledus.S5	AUGUSTUS	stop_codon	9133087	9133089	.	+	0	transcript_id "Ledus.S5G087500.t1"; gene_id "Ledus.S5G087500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg488.t1 is derived from g7349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2852724	2853487	.	-	.	Ledus.S2G037000
Ledus.S2	AUGUSTUS	transcript	2852724	2853487	.	-	.	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	stop_codon	2852721	2852723	.	-	0	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	CDS	2852724	2852795	0.99	-	0	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	exon	2852724	2852795	.	-	.	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	intron	2852796	2852925	.	-	.	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	CDS	2852926	2853007	1	-	1	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	exon	2852926	2853007	.	-	.	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	intron	2853008	2853115	.	-	.	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	CDS	2853116	2853210	0.96	-	0	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	exon	2853116	2853210	.	-	.	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	intron	2853211	2853331	.	-	.	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	CDS	2853332	2853487	1	-	0	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	exon	2853332	2853487	.	-	.	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
Ledus.S2	AUGUSTUS	start_codon	2853485	2853487	.	-	0	transcript_id "Ledus.S2G037000.t1"; gene_id "Ledus.S2G037000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10096.t1 is derived from g11126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12611445	12613054	.	-	.	Ledus.S3G157300
Ledus.S3	AUGUSTUS	transcript	12611445	12613054	.	-	.	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	stop_codon	12611442	12611444	.	-	0	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	CDS	12611445	12612025	0.85	-	2	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	exon	12611445	12612025	.	-	.	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	intron	12612026	12612128	.	-	.	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	CDS	12612129	12612320	0.99	-	2	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	exon	12612129	12612320	.	-	.	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	intron	12612321	12612393	.	-	.	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	CDS	12612394	12612572	1	-	1	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	exon	12612394	12612572	.	-	.	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	intron	12612573	12612661	.	-	.	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	CDS	12612662	12612845	1	-	2	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	exon	12612662	12612845	.	-	.	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	intron	12612846	12612924	.	-	.	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	CDS	12612925	12613054	0.93	-	0	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	exon	12612925	12613054	.	-	.	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
Ledus.S3	AUGUSTUS	start_codon	12613052	12613054	.	-	0	transcript_id "Ledus.S3G157300.t1"; gene_id "Ledus.S3G157300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3770.t1 is derived from g1206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11883825	11887682	.	+	.	Ledus.S1G119100
Ledus.S1	AUGUSTUS	transcript	11883825	11887682	.	+	.	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	start_codon	11883825	11883827	.	+	0	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	CDS	11883825	11884042	0.7	+	0	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	exon	11883825	11884042	.	+	.	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	intron	11884043	11884119	.	+	.	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	CDS	11884120	11884223	1	+	1	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	exon	11884120	11884223	.	+	.	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	intron	11884224	11884442	.	+	.	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	CDS	11884443	11884619	1	+	2	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	exon	11884443	11884619	.	+	.	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	intron	11884620	11884843	.	+	.	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	CDS	11884844	11887419	0.67	+	2	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	exon	11884844	11887419	.	+	.	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	intron	11887420	11887541	.	+	.	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	CDS	11887542	11887682	1	+	0	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	exon	11887542	11887682	.	+	.	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
Ledus.S1	AUGUSTUS	stop_codon	11887683	11887685	.	+	0	transcript_id "Ledus.S1G119100.t1"; gene_id "Ledus.S1G119100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7381.t1 is derived from g12052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1927317	1927761	.	+	.	Ledus.S5G015900
Ledus.S5	AUGUSTUS	transcript	1927317	1927761	.	+	.	transcript_id "Ledus.S5G015900.t1"; gene_id "Ledus.S5G015900"
Ledus.S5	AUGUSTUS	start_codon	1927317	1927319	.	+	0	transcript_id "Ledus.S5G015900.t1"; gene_id "Ledus.S5G015900"
Ledus.S5	AUGUSTUS	CDS	1927317	1927588	0.59	+	0	transcript_id "Ledus.S5G015900.t1"; gene_id "Ledus.S5G015900"
Ledus.S5	AUGUSTUS	exon	1927317	1927588	.	+	.	transcript_id "Ledus.S5G015900.t1"; gene_id "Ledus.S5G015900"
Ledus.S5	AUGUSTUS	intron	1927589	1927760	.	+	.	transcript_id "Ledus.S5G015900.t1"; gene_id "Ledus.S5G015900"
Ledus.S5	AUGUSTUS	CDS	1927761	1927761	0.3	+	1	transcript_id "Ledus.S5G015900.t1"; gene_id "Ledus.S5G015900"
Ledus.S5	AUGUSTUS	exon	1927761	1927761	.	+	.	transcript_id "Ledus.S5G015900.t1"; gene_id "Ledus.S5G015900"
Ledus.S5	AUGUSTUS	stop_codon	1927762	1927764	.	+	0	transcript_id "Ledus.S5G015900.t1"; gene_id "Ledus.S5G015900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6007.t1 is derived from g3450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28235135	28238917	.	-	.	Ledus.S1G342800
Ledus.S1	AUGUSTUS	transcript	28235135	28238917	.	-	.	transcript_id "Ledus.S1G342800.t1"; gene_id "Ledus.S1G342800"
Ledus.S1	AUGUSTUS	stop_codon	28235132	28235134	.	-	0	transcript_id "Ledus.S1G342800.t1"; gene_id "Ledus.S1G342800"
Ledus.S1	AUGUSTUS	CDS	28235135	28235676	0.98	-	2	transcript_id "Ledus.S1G342800.t1"; gene_id "Ledus.S1G342800"
Ledus.S1	AUGUSTUS	exon	28235135	28235676	.	-	.	transcript_id "Ledus.S1G342800.t1"; gene_id "Ledus.S1G342800"
Ledus.S1	AUGUSTUS	intron	28235677	28235833	.	-	.	transcript_id "Ledus.S1G342800.t1"; gene_id "Ledus.S1G342800"
Ledus.S1	AUGUSTUS	CDS	28235834	28238578	0.56	-	2	transcript_id "Ledus.S1G342800.t1"; gene_id "Ledus.S1G342800"
Ledus.S1	AUGUSTUS	exon	28235834	28238578	.	-	.	transcript_id "Ledus.S1G342800.t1"; gene_id "Ledus.S1G342800"
Ledus.S1	AUGUSTUS	intron	28238579	28238733	.	-	.	transcript_id "Ledus.S1G342800.t1"; gene_id "Ledus.S1G342800"
Ledus.S1	AUGUSTUS	CDS	28238734	28238917	0.55	-	0	transcript_id "Ledus.S1G342800.t1"; gene_id "Ledus.S1G342800"
Ledus.S1	AUGUSTUS	exon	28238734	28238917	.	-	.	transcript_id "Ledus.S1G342800.t1"; gene_id "Ledus.S1G342800"
Ledus.S1	AUGUSTUS	start_codon	28238915	28238917	.	-	0	transcript_id "Ledus.S1G342800.t1"; gene_id "Ledus.S1G342800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2217.t1 is derived from g9080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16135826	16136320	.	+	.	Ledus.S2G209900
Ledus.S2	AUGUSTUS	transcript	16135826	16136320	.	+	.	transcript_id "Ledus.S2G209900.t1"; gene_id "Ledus.S2G209900"
Ledus.S2	AUGUSTUS	start_codon	16135826	16135828	.	+	0	transcript_id "Ledus.S2G209900.t1"; gene_id "Ledus.S2G209900"
Ledus.S2	AUGUSTUS	CDS	16135826	16135960	0.29	+	0	transcript_id "Ledus.S2G209900.t1"; gene_id "Ledus.S2G209900"
Ledus.S2	AUGUSTUS	exon	16135826	16135960	.	+	.	transcript_id "Ledus.S2G209900.t1"; gene_id "Ledus.S2G209900"
Ledus.S2	AUGUSTUS	intron	16135961	16136131	.	+	.	transcript_id "Ledus.S2G209900.t1"; gene_id "Ledus.S2G209900"
Ledus.S2	AUGUSTUS	CDS	16136132	16136320	0.29	+	0	transcript_id "Ledus.S2G209900.t1"; gene_id "Ledus.S2G209900"
Ledus.S2	AUGUSTUS	exon	16136132	16136320	.	+	.	transcript_id "Ledus.S2G209900.t1"; gene_id "Ledus.S2G209900"
Ledus.S2	AUGUSTUS	stop_codon	16136321	16136323	.	+	0	transcript_id "Ledus.S2G209900.t1"; gene_id "Ledus.S2G209900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1141.t1 is derived from g8002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7885787	7890564	.	-	.	Ledus.S2G102300
Ledus.S2	AUGUSTUS	transcript	7885787	7890564	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	stop_codon	7885784	7885786	.	-	0	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7885787	7885895	1	-	1	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7885787	7885895	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7885896	7886008	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7886009	7886098	0.94	-	1	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7886009	7886098	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7886099	7886209	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7886210	7886289	1	-	0	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7886210	7886289	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7886290	7886385	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7886386	7886469	0.99	-	0	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7886386	7886469	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7886470	7886588	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7886589	7886637	1	-	1	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7886589	7886637	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7886638	7886730	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7886731	7886860	1	-	2	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7886731	7886860	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7886861	7886938	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7886939	7887324	1	-	1	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7886939	7887324	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7887325	7887454	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7887455	7887516	1	-	0	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7887455	7887516	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7887517	7887778	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7887779	7887838	1	-	0	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7887779	7887838	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7887839	7887992	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7887993	7888046	1	-	0	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7887993	7888046	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7888047	7888248	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7888249	7888301	1	-	2	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7888249	7888301	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7888302	7888552	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7888553	7888617	1	-	1	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7888553	7888617	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7888618	7888705	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7888706	7888815	0.84	-	0	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7888706	7888815	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7888816	7888929	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7888930	7888998	0.84	-	0	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7888930	7888998	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7888999	7889159	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7889160	7889311	1	-	2	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7889160	7889311	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7889312	7889472	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7889473	7889523	1	-	2	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7889473	7889523	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7889524	7889629	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7889630	7889795	1	-	0	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7889630	7889795	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7889796	7889932	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7889933	7890071	1	-	1	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7889933	7890071	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7890072	7890211	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7890212	7890267	1	-	0	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7890212	7890267	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7890268	7890369	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7890370	7890564	0.76	-	0	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7890370	7890564	.	-	.	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	start_codon	7890562	7890564	.	-	0	transcript_id "Ledus.S2G102300.t1"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	transcript	7885787	7890564	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	stop_codon	7885784	7885786	.	-	0	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7885787	7885895	1	-	1	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7885787	7885895	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7885896	7886008	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7886009	7886098	0.9	-	1	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7886009	7886098	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7886099	7886209	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7886210	7886289	1	-	0	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7886210	7886289	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7886290	7886385	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7886386	7886469	1	-	0	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7886386	7886469	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7886470	7886588	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7886589	7886637	1	-	1	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7886589	7886637	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7886638	7886730	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7886731	7886860	1	-	2	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7886731	7886860	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7886861	7886938	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7886939	7887324	1	-	1	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7886939	7887324	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7887325	7887454	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7887455	7887516	1	-	0	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7887455	7887516	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7887517	7887778	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7887779	7887838	1	-	0	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7887779	7887838	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7887839	7887992	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7887993	7888046	1	-	0	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7887993	7888046	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7888047	7888248	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7888249	7888301	1	-	2	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7888249	7888301	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7888302	7888552	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7888553	7888617	1	-	1	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7888553	7888617	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7888618	7888705	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7888706	7888815	0.98	-	0	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7888706	7888815	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7888816	7888904	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7888905	7888998	0.81	-	1	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7888905	7888998	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7888999	7889159	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7889160	7889301	1	-	2	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7889160	7889301	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7889302	7889472	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7889473	7889523	1	-	2	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7889473	7889523	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7889524	7889629	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7889630	7889795	1	-	0	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7889630	7889795	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7889796	7889932	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7889933	7890071	1	-	1	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7889933	7890071	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7890072	7890211	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7890212	7890267	1	-	0	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7890212	7890267	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	intron	7890268	7890369	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	CDS	7890370	7890564	0.76	-	0	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	exon	7890370	7890564	.	-	.	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
Ledus.S2	AUGUSTUS	start_codon	7890562	7890564	.	-	0	transcript_id "Ledus.S2G102300.t2"; gene_id "Ledus.S2G102300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9020.t1 is derived from g10050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3889739	3893182	.	+	.	Ledus.S3G049700
Ledus.S3	AUGUSTUS	transcript	3889739	3893182	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	start_codon	3889739	3889741	.	+	0	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	CDS	3889739	3889828	1	+	0	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	exon	3889739	3889828	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	intron	3889829	3889919	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	CDS	3889920	3890078	1	+	0	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	exon	3889920	3890078	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	intron	3890079	3890179	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	CDS	3890180	3890298	1	+	0	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	exon	3890180	3890298	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	intron	3890299	3890487	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	CDS	3890488	3890642	1	+	1	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	exon	3890488	3890642	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	intron	3890643	3890850	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	CDS	3890851	3890939	1	+	2	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	exon	3890851	3890939	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	intron	3890940	3891022	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	CDS	3891023	3891578	0.98	+	0	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	exon	3891023	3891578	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	intron	3891579	3891703	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	CDS	3891704	3891862	1	+	2	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	exon	3891704	3891862	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	intron	3891863	3892046	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	CDS	3892047	3892282	1	+	2	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	exon	3892047	3892282	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	intron	3892283	3892368	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	CDS	3892369	3892451	0.93	+	0	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	exon	3892369	3892451	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	intron	3892452	3892572	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	CDS	3892573	3892684	1	+	1	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	exon	3892573	3892684	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	intron	3892685	3892784	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	CDS	3892785	3892859	1	+	0	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	exon	3892785	3892859	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	intron	3892860	3892969	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	CDS	3892970	3893182	1	+	0	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	exon	3892970	3893182	.	+	.	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
Ledus.S3	AUGUSTUS	stop_codon	3893183	3893185	.	+	0	transcript_id "Ledus.S3G049700.t1"; gene_id "Ledus.S3G049700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2733.t1 is derived from g167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2681002	2682144	.	+	.	Ledus.S1G015400
Ledus.S1	AUGUSTUS	transcript	2681002	2682144	.	+	.	transcript_id "Ledus.S1G015400.t1"; gene_id "Ledus.S1G015400"
Ledus.S1	AUGUSTUS	start_codon	2681002	2681004	.	+	0	transcript_id "Ledus.S1G015400.t1"; gene_id "Ledus.S1G015400"
Ledus.S1	AUGUSTUS	CDS	2681002	2682144	0.91	+	0	transcript_id "Ledus.S1G015400.t1"; gene_id "Ledus.S1G015400"
Ledus.S1	AUGUSTUS	exon	2681002	2682144	.	+	.	transcript_id "Ledus.S1G015400.t1"; gene_id "Ledus.S1G015400"
Ledus.S1	AUGUSTUS	stop_codon	2682145	2682147	.	+	0	transcript_id "Ledus.S1G015400.t1"; gene_id "Ledus.S1G015400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11606.t1 is derived from g5224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5495758	5498699	.	+	.	Ledus.S4G076200
Ledus.S4	AUGUSTUS	transcript	5495758	5498699	.	+	.	transcript_id "Ledus.S4G076200.t1"; gene_id "Ledus.S4G076200"
Ledus.S4	AUGUSTUS	start_codon	5495758	5495760	.	+	0	transcript_id "Ledus.S4G076200.t1"; gene_id "Ledus.S4G076200"
Ledus.S4	AUGUSTUS	CDS	5495758	5497992	1	+	0	transcript_id "Ledus.S4G076200.t1"; gene_id "Ledus.S4G076200"
Ledus.S4	AUGUSTUS	exon	5495758	5497992	.	+	.	transcript_id "Ledus.S4G076200.t1"; gene_id "Ledus.S4G076200"
Ledus.S4	AUGUSTUS	intron	5497993	5498083	.	+	.	transcript_id "Ledus.S4G076200.t1"; gene_id "Ledus.S4G076200"
Ledus.S4	AUGUSTUS	CDS	5498084	5498281	1	+	0	transcript_id "Ledus.S4G076200.t1"; gene_id "Ledus.S4G076200"
Ledus.S4	AUGUSTUS	exon	5498084	5498281	.	+	.	transcript_id "Ledus.S4G076200.t1"; gene_id "Ledus.S4G076200"
Ledus.S4	AUGUSTUS	intron	5498282	5498405	.	+	.	transcript_id "Ledus.S4G076200.t1"; gene_id "Ledus.S4G076200"
Ledus.S4	AUGUSTUS	CDS	5498406	5498699	1	+	0	transcript_id "Ledus.S4G076200.t1"; gene_id "Ledus.S4G076200"
Ledus.S4	AUGUSTUS	exon	5498406	5498699	.	+	.	transcript_id "Ledus.S4G076200.t1"; gene_id "Ledus.S4G076200"
Ledus.S4	AUGUSTUS	stop_codon	5498700	5498702	.	+	0	transcript_id "Ledus.S4G076200.t1"; gene_id "Ledus.S4G076200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5330.t1 is derived from g2769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23398248	23404607	.	+	.	Ledus.S1G275100
Ledus.S1	AUGUSTUS	transcript	23398248	23404607	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	start_codon	23398248	23398250	.	+	0	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	CDS	23398248	23398373	0.65	+	0	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	exon	23398248	23398373	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	intron	23398374	23398460	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	CDS	23398461	23398709	0.97	+	0	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	exon	23398461	23398709	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	intron	23398710	23398877	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	CDS	23398878	23399041	0.89	+	0	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	exon	23398878	23399041	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	intron	23399042	23399627	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	CDS	23399628	23400606	0.84	+	1	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	exon	23399628	23400606	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	intron	23400607	23400686	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	CDS	23400687	23401337	0.71	+	0	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	exon	23400687	23401337	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	intron	23401338	23401503	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	CDS	23401504	23401647	1	+	0	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	exon	23401504	23401647	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	intron	23401648	23401741	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	CDS	23401742	23401977	0.5	+	0	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	exon	23401742	23401977	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	intron	23401978	23402066	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	CDS	23402067	23402810	1	+	1	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	exon	23402067	23402810	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	intron	23402811	23402913	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	CDS	23402914	23403148	0.99	+	1	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	exon	23402914	23403148	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	intron	23403149	23403512	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	CDS	23403513	23404607	0.99	+	0	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	exon	23403513	23404607	.	+	.	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
Ledus.S1	AUGUSTUS	stop_codon	23404608	23404610	.	+	0	transcript_id "Ledus.S1G275100.t1"; gene_id "Ledus.S1G275100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2313.t1 is derived from g9176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17133593	17134906	.	-	.	Ledus.S2G219500
Ledus.S2	AUGUSTUS	transcript	17133593	17134906	.	-	.	transcript_id "Ledus.S2G219500.t1"; gene_id "Ledus.S2G219500"
Ledus.S2	AUGUSTUS	stop_codon	17133590	17133592	.	-	0	transcript_id "Ledus.S2G219500.t1"; gene_id "Ledus.S2G219500"
Ledus.S2	AUGUSTUS	CDS	17133593	17134516	0.54	-	0	transcript_id "Ledus.S2G219500.t1"; gene_id "Ledus.S2G219500"
Ledus.S2	AUGUSTUS	exon	17133593	17134516	.	-	.	transcript_id "Ledus.S2G219500.t1"; gene_id "Ledus.S2G219500"
Ledus.S2	AUGUSTUS	intron	17134517	17134681	.	-	.	transcript_id "Ledus.S2G219500.t1"; gene_id "Ledus.S2G219500"
Ledus.S2	AUGUSTUS	CDS	17134682	17134906	0.86	-	0	transcript_id "Ledus.S2G219500.t1"; gene_id "Ledus.S2G219500"
Ledus.S2	AUGUSTUS	exon	17134682	17134906	.	-	.	transcript_id "Ledus.S2G219500.t1"; gene_id "Ledus.S2G219500"
Ledus.S2	AUGUSTUS	start_codon	17134904	17134906	.	-	0	transcript_id "Ledus.S2G219500.t1"; gene_id "Ledus.S2G219500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10799.t1 is derived from g11831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17830040	17833818	.	-	.	Ledus.S3G227600
Ledus.S3	AUGUSTUS	transcript	17830040	17833818	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	stop_codon	17830037	17830039	.	-	0	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17830040	17830120	0.78	-	0	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17830040	17830120	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17830121	17830207	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17830208	17830267	1	-	0	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17830208	17830267	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17830268	17830349	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17830350	17830410	1	-	1	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17830350	17830410	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17830411	17830562	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17830563	17830633	0.98	-	0	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17830563	17830633	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17830634	17830744	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17830745	17830821	0.97	-	2	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17830745	17830821	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17830822	17830978	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17830979	17831036	1	-	0	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17830979	17831036	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17831037	17831175	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17831176	17831229	1	-	0	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17831176	17831229	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17831230	17831326	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17831327	17831398	1	-	0	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17831327	17831398	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17831399	17831513	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17831514	17831619	0.93	-	1	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17831514	17831619	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17831620	17831841	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17831842	17831958	1	-	1	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17831842	17831958	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17831959	17832082	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17832083	17832166	1	-	1	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17832083	17832166	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17832167	17832303	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17832304	17832396	1	-	1	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17832304	17832396	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17832397	17832706	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17832707	17832927	1	-	0	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17832707	17832927	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17832928	17833008	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17833009	17833086	1	-	0	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17833009	17833086	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17833087	17833212	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17833213	17833532	0.99	-	2	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17833213	17833532	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	intron	17833533	17833718	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	CDS	17833719	17833818	0.92	-	0	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	exon	17833719	17833818	.	-	.	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
Ledus.S3	AUGUSTUS	start_codon	17833816	17833818	.	-	0	transcript_id "Ledus.S3G227600.t1"; gene_id "Ledus.S3G227600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5613.t1 is derived from g3052.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25392309	25396904	.	-	.	Ledus.S1G303400
Ledus.S1	AUGUSTUS	transcript	25393727	25396904	.	-	.	transcript_id "Ledus.S1G303400.t1"; gene_id "Ledus.S1G303400"
Ledus.S1	AUGUSTUS	stop_codon	25393724	25393726	.	-	0	transcript_id "Ledus.S1G303400.t1"; gene_id "Ledus.S1G303400"
Ledus.S1	AUGUSTUS	CDS	25393727	25393735	0.85	-	0	transcript_id "Ledus.S1G303400.t1"; gene_id "Ledus.S1G303400"
Ledus.S1	AUGUSTUS	exon	25393727	25393735	.	-	.	transcript_id "Ledus.S1G303400.t1"; gene_id "Ledus.S1G303400"
Ledus.S1	AUGUSTUS	intron	25393736	25393835	.	-	.	transcript_id "Ledus.S1G303400.t1"; gene_id "Ledus.S1G303400"
Ledus.S1	AUGUSTUS	CDS	25393836	25396904	0.52	-	0	transcript_id "Ledus.S1G303400.t1"; gene_id "Ledus.S1G303400"
Ledus.S1	AUGUSTUS	exon	25393836	25396904	.	-	.	transcript_id "Ledus.S1G303400.t1"; gene_id "Ledus.S1G303400"
Ledus.S1	AUGUSTUS	start_codon	25396902	25396904	.	-	0	transcript_id "Ledus.S1G303400.t1"; gene_id "Ledus.S1G303400"
Ledus.S1	AUGUSTUS	transcript	25392309	25396904	.	-	.	transcript_id "Ledus.S1G303400.t2"; gene_id "Ledus.S1G303400"
Ledus.S1	AUGUSTUS	stop_codon	25392306	25392308	.	-	0	transcript_id "Ledus.S1G303400.t2"; gene_id "Ledus.S1G303400"
Ledus.S1	AUGUSTUS	CDS	25392309	25396904	0.97	-	0	transcript_id "Ledus.S1G303400.t2"; gene_id "Ledus.S1G303400"
Ledus.S1	AUGUSTUS	exon	25392309	25396904	.	-	.	transcript_id "Ledus.S1G303400.t2"; gene_id "Ledus.S1G303400"
Ledus.S1	AUGUSTUS	start_codon	25396902	25396904	.	-	0	transcript_id "Ledus.S1G303400.t2"; gene_id "Ledus.S1G303400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12773.t1 is derived from g6395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14428335	14429041	.	+	.	Ledus.S4G192900
Ledus.S4	AUGUSTUS	transcript	14428335	14429041	.	+	.	transcript_id "Ledus.S4G192900.t1"; gene_id "Ledus.S4G192900"
Ledus.S4	AUGUSTUS	start_codon	14428335	14428337	.	+	0	transcript_id "Ledus.S4G192900.t1"; gene_id "Ledus.S4G192900"
Ledus.S4	AUGUSTUS	CDS	14428335	14428374	0.92	+	0	transcript_id "Ledus.S4G192900.t1"; gene_id "Ledus.S4G192900"
Ledus.S4	AUGUSTUS	exon	14428335	14428374	.	+	.	transcript_id "Ledus.S4G192900.t1"; gene_id "Ledus.S4G192900"
Ledus.S4	AUGUSTUS	intron	14428375	14428480	.	+	.	transcript_id "Ledus.S4G192900.t1"; gene_id "Ledus.S4G192900"
Ledus.S4	AUGUSTUS	CDS	14428481	14428590	0.8	+	2	transcript_id "Ledus.S4G192900.t1"; gene_id "Ledus.S4G192900"
Ledus.S4	AUGUSTUS	exon	14428481	14428590	.	+	.	transcript_id "Ledus.S4G192900.t1"; gene_id "Ledus.S4G192900"
Ledus.S4	AUGUSTUS	intron	14428591	14428750	.	+	.	transcript_id "Ledus.S4G192900.t1"; gene_id "Ledus.S4G192900"
Ledus.S4	AUGUSTUS	CDS	14428751	14429041	1	+	0	transcript_id "Ledus.S4G192900.t1"; gene_id "Ledus.S4G192900"
Ledus.S4	AUGUSTUS	exon	14428751	14429041	.	+	.	transcript_id "Ledus.S4G192900.t1"; gene_id "Ledus.S4G192900"
Ledus.S4	AUGUSTUS	stop_codon	14429042	14429044	.	+	0	transcript_id "Ledus.S4G192900.t1"; gene_id "Ledus.S4G192900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8981.t1 is derived from g10011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3663339	3665892	.	-	.	Ledus.S3G045800
Ledus.S3	AUGUSTUS	transcript	3663339	3665892	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	stop_codon	3663336	3663338	.	-	0	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	CDS	3663339	3663446	1	-	0	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	exon	3663339	3663446	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	intron	3663447	3663522	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	CDS	3663523	3663740	1	-	2	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	exon	3663523	3663740	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	intron	3663741	3663865	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	CDS	3663866	3664009	1	-	2	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	exon	3663866	3664009	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	intron	3664010	3664104	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	CDS	3664105	3664201	1	-	0	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	exon	3664105	3664201	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	intron	3664202	3664343	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	CDS	3664344	3664438	1	-	2	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	exon	3664344	3664438	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	intron	3664439	3664536	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	CDS	3664537	3664628	1	-	1	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	exon	3664537	3664628	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	intron	3664629	3664765	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	CDS	3664766	3664911	1	-	0	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	exon	3664766	3664911	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	intron	3664912	3665066	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	CDS	3665067	3665166	1	-	1	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	exon	3665067	3665166	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	intron	3665167	3665313	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	CDS	3665314	3665418	1	-	1	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	exon	3665314	3665418	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	intron	3665419	3665506	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	CDS	3665507	3665543	1	-	2	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	exon	3665507	3665543	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	intron	3665544	3665765	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	CDS	3665766	3665892	0.92	-	0	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	exon	3665766	3665892	.	-	.	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
Ledus.S3	AUGUSTUS	start_codon	3665890	3665892	.	-	0	transcript_id "Ledus.S3G045800.t1"; gene_id "Ledus.S3G045800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12975.t1 is derived from g6785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1507620	1509343	.	-	.	Ledus.S6G003700
Ledus.S6	AUGUSTUS	transcript	1507620	1509343	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	stop_codon	1507617	1507619	.	-	0	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	CDS	1507620	1507643	1	-	0	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	exon	1507620	1507643	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	intron	1507644	1507723	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	CDS	1507724	1507851	1	-	2	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	exon	1507724	1507851	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	intron	1507852	1507931	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	CDS	1507932	1508027	0.87	-	2	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	exon	1507932	1508027	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	intron	1508028	1508131	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	CDS	1508132	1508202	0.49	-	1	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	exon	1508132	1508202	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	intron	1508203	1508321	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	CDS	1508322	1508410	0.52	-	0	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	exon	1508322	1508410	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	intron	1508411	1508505	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	CDS	1508506	1508607	1	-	0	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	exon	1508506	1508607	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	intron	1508608	1508879	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	CDS	1508880	1508998	0.61	-	2	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	exon	1508880	1508998	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	intron	1508999	1509080	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	CDS	1509081	1509208	1	-	1	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	exon	1509081	1509208	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	intron	1509209	1509287	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	CDS	1509288	1509343	0.55	-	0	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	exon	1509288	1509343	.	-	.	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
Ledus.S6	AUGUSTUS	start_codon	1509341	1509343	.	-	0	transcript_id "Ledus.S6G003700.t1"; gene_id "Ledus.S6G003700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6918.t1 is derived from g4362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35343532	35345236	.	-	.	Ledus.S1G433900
Ledus.S1	AUGUSTUS	transcript	35343532	35345236	.	-	.	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	stop_codon	35343529	35343531	.	-	0	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	CDS	35343532	35343579	0.98	-	0	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	exon	35343532	35343579	.	-	.	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	intron	35343580	35343705	.	-	.	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	CDS	35343706	35343901	0.91	-	1	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	exon	35343706	35343901	.	-	.	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	intron	35343902	35344292	.	-	.	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	CDS	35344293	35344452	0.31	-	2	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	exon	35344293	35344452	.	-	.	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	intron	35344453	35345067	.	-	.	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	CDS	35345068	35345236	0.14	-	0	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	exon	35345068	35345236	.	-	.	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
Ledus.S1	AUGUSTUS	start_codon	35345234	35345236	.	-	0	transcript_id "Ledus.S1G433900.t1"; gene_id "Ledus.S1G433900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9684.t1 is derived from g10714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8996065	8997138	.	-	.	Ledus.S3G116100
Ledus.S3	AUGUSTUS	transcript	8996065	8997138	.	-	.	transcript_id "Ledus.S3G116100.t1"; gene_id "Ledus.S3G116100"
Ledus.S3	AUGUSTUS	stop_codon	8996062	8996064	.	-	0	transcript_id "Ledus.S3G116100.t1"; gene_id "Ledus.S3G116100"
Ledus.S3	AUGUSTUS	CDS	8996065	8997138	0.99	-	0	transcript_id "Ledus.S3G116100.t1"; gene_id "Ledus.S3G116100"
Ledus.S3	AUGUSTUS	exon	8996065	8997138	.	-	.	transcript_id "Ledus.S3G116100.t1"; gene_id "Ledus.S3G116100"
Ledus.S3	AUGUSTUS	start_codon	8997136	8997138	.	-	0	transcript_id "Ledus.S3G116100.t1"; gene_id "Ledus.S3G116100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9335.t1 is derived from g10365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6187526	6189373	.	+	.	Ledus.S3G081200
Ledus.S3	AUGUSTUS	transcript	6187526	6189373	.	+	.	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	start_codon	6187526	6187528	.	+	0	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	CDS	6187526	6187675	0.87	+	0	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	exon	6187526	6187675	.	+	.	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	intron	6187676	6187828	.	+	.	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	CDS	6187829	6187892	1	+	0	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	exon	6187829	6187892	.	+	.	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	intron	6187893	6187972	.	+	.	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	CDS	6187973	6188379	0.91	+	2	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	exon	6187973	6188379	.	+	.	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	intron	6188380	6188484	.	+	.	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	CDS	6188485	6188703	1	+	0	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	exon	6188485	6188703	.	+	.	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	intron	6188704	6188871	.	+	.	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	CDS	6188872	6188982	1	+	0	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	exon	6188872	6188982	.	+	.	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	intron	6188983	6189082	.	+	.	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	CDS	6189083	6189373	0.97	+	0	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	exon	6189083	6189373	.	+	.	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
Ledus.S3	AUGUSTUS	stop_codon	6189374	6189376	.	+	0	transcript_id "Ledus.S3G081200.t1"; gene_id "Ledus.S3G081200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7477.t1 is derived from g12148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3050834	3051420	.	+	.	Ledus.S5G025500
Ledus.S5	AUGUSTUS	transcript	3050979	3051420	.	+	.	transcript_id "Ledus.S5G025500.t1"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	start_codon	3050979	3050981	.	+	0	transcript_id "Ledus.S5G025500.t1"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	CDS	3050979	3051097	0.93	+	0	transcript_id "Ledus.S5G025500.t1"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	exon	3050979	3051097	.	+	.	transcript_id "Ledus.S5G025500.t1"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	intron	3051098	3051260	.	+	.	transcript_id "Ledus.S5G025500.t1"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	CDS	3051261	3051420	0.88	+	1	transcript_id "Ledus.S5G025500.t1"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	exon	3051261	3051420	.	+	.	transcript_id "Ledus.S5G025500.t1"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	stop_codon	3051421	3051423	.	+	0	transcript_id "Ledus.S5G025500.t1"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	transcript	3050834	3051420	.	+	.	transcript_id "Ledus.S5G025500.t2"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	start_codon	3050834	3050836	.	+	0	transcript_id "Ledus.S5G025500.t2"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	CDS	3050834	3050940	0.44	+	0	transcript_id "Ledus.S5G025500.t2"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	exon	3050834	3050940	.	+	.	transcript_id "Ledus.S5G025500.t2"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	intron	3050941	3051260	.	+	.	transcript_id "Ledus.S5G025500.t2"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	CDS	3051261	3051420	0.94	+	1	transcript_id "Ledus.S5G025500.t2"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	exon	3051261	3051420	.	+	.	transcript_id "Ledus.S5G025500.t2"; gene_id "Ledus.S5G025500"
Ledus.S5	AUGUSTUS	stop_codon	3051421	3051423	.	+	0	transcript_id "Ledus.S5G025500.t2"; gene_id "Ledus.S5G025500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11073.t1 is derived from g4691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1609397	1610398	.	-	.	Ledus.S4G022900
Ledus.S4	AUGUSTUS	transcript	1609397	1610398	.	-	.	transcript_id "Ledus.S4G022900.t1"; gene_id "Ledus.S4G022900"
Ledus.S4	AUGUSTUS	stop_codon	1609394	1609396	.	-	0	transcript_id "Ledus.S4G022900.t1"; gene_id "Ledus.S4G022900"
Ledus.S4	AUGUSTUS	CDS	1609397	1610398	0.62	-	0	transcript_id "Ledus.S4G022900.t1"; gene_id "Ledus.S4G022900"
Ledus.S4	AUGUSTUS	exon	1609397	1610398	.	-	.	transcript_id "Ledus.S4G022900.t1"; gene_id "Ledus.S4G022900"
Ledus.S4	AUGUSTUS	start_codon	1610396	1610398	.	-	0	transcript_id "Ledus.S4G022900.t1"; gene_id "Ledus.S4G022900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10589.t1 is derived from g11619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16267492	16267809	.	+	.	Ledus.S3G206600
Ledus.S3	AUGUSTUS	transcript	16267492	16267809	.	+	.	transcript_id "Ledus.S3G206600.t1"; gene_id "Ledus.S3G206600"
Ledus.S3	AUGUSTUS	start_codon	16267492	16267494	.	+	0	transcript_id "Ledus.S3G206600.t1"; gene_id "Ledus.S3G206600"
Ledus.S3	AUGUSTUS	CDS	16267492	16267809	0.87	+	0	transcript_id "Ledus.S3G206600.t1"; gene_id "Ledus.S3G206600"
Ledus.S3	AUGUSTUS	exon	16267492	16267809	.	+	.	transcript_id "Ledus.S3G206600.t1"; gene_id "Ledus.S3G206600"
Ledus.S3	AUGUSTUS	stop_codon	16267810	16267812	.	+	0	transcript_id "Ledus.S3G206600.t1"; gene_id "Ledus.S3G206600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1873.t1 is derived from g8736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13112299	13114555	.	-	.	Ledus.S2G175500
Ledus.S2	AUGUSTUS	transcript	13112299	13114555	.	-	.	transcript_id "Ledus.S2G175500.t1"; gene_id "Ledus.S2G175500"
Ledus.S2	AUGUSTUS	stop_codon	13112296	13112298	.	-	0	transcript_id "Ledus.S2G175500.t1"; gene_id "Ledus.S2G175500"
Ledus.S2	AUGUSTUS	CDS	13112299	13112326	0.58	-	1	transcript_id "Ledus.S2G175500.t1"; gene_id "Ledus.S2G175500"
Ledus.S2	AUGUSTUS	exon	13112299	13112326	.	-	.	transcript_id "Ledus.S2G175500.t1"; gene_id "Ledus.S2G175500"
Ledus.S2	AUGUSTUS	intron	13112327	13112482	.	-	.	transcript_id "Ledus.S2G175500.t1"; gene_id "Ledus.S2G175500"
Ledus.S2	AUGUSTUS	CDS	13112483	13112622	0.33	-	0	transcript_id "Ledus.S2G175500.t1"; gene_id "Ledus.S2G175500"
Ledus.S2	AUGUSTUS	exon	13112483	13112622	.	-	.	transcript_id "Ledus.S2G175500.t1"; gene_id "Ledus.S2G175500"
Ledus.S2	AUGUSTUS	intron	13112623	13113028	.	-	.	transcript_id "Ledus.S2G175500.t1"; gene_id "Ledus.S2G175500"
Ledus.S2	AUGUSTUS	CDS	13113029	13114555	0.31	-	0	transcript_id "Ledus.S2G175500.t1"; gene_id "Ledus.S2G175500"
Ledus.S2	AUGUSTUS	exon	13113029	13114555	.	-	.	transcript_id "Ledus.S2G175500.t1"; gene_id "Ledus.S2G175500"
Ledus.S2	AUGUSTUS	start_codon	13114553	13114555	.	-	0	transcript_id "Ledus.S2G175500.t1"; gene_id "Ledus.S2G175500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6272.t1 is derived from g3715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30059830	30062166	.	-	.	Ledus.S1G369300
Ledus.S1	AUGUSTUS	transcript	30059830	30062166	.	-	.	transcript_id "Ledus.S1G369300.t1"; gene_id "Ledus.S1G369300"
Ledus.S1	AUGUSTUS	stop_codon	30059827	30059829	.	-	0	transcript_id "Ledus.S1G369300.t1"; gene_id "Ledus.S1G369300"
Ledus.S1	AUGUSTUS	CDS	30059830	30062166	1	-	0	transcript_id "Ledus.S1G369300.t1"; gene_id "Ledus.S1G369300"
Ledus.S1	AUGUSTUS	exon	30059830	30062166	.	-	.	transcript_id "Ledus.S1G369300.t1"; gene_id "Ledus.S1G369300"
Ledus.S1	AUGUSTUS	start_codon	30062164	30062166	.	-	0	transcript_id "Ledus.S1G369300.t1"; gene_id "Ledus.S1G369300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8233.t1 is derived from g12904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10072093	10074761	.	-	.	Ledus.S5G101100
Ledus.S5	AUGUSTUS	transcript	10072093	10074761	.	-	.	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	stop_codon	10072090	10072092	.	-	0	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	CDS	10072093	10072160	0.73	-	2	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	exon	10072093	10072160	.	-	.	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	intron	10072161	10072539	.	-	.	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	CDS	10072540	10072643	0.33	-	1	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	exon	10072540	10072643	.	-	.	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	intron	10072644	10072751	.	-	.	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	CDS	10072752	10072807	0.33	-	0	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	exon	10072752	10072807	.	-	.	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	intron	10072808	10072970	.	-	.	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	CDS	10072971	10073104	0.2	-	2	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	exon	10072971	10073104	.	-	.	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	intron	10073105	10073329	.	-	.	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	CDS	10073330	10073582	0.57	-	0	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	exon	10073330	10073582	.	-	.	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	intron	10073583	10073744	.	-	.	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	CDS	10073745	10074761	0.93	-	0	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	exon	10073745	10074761	.	-	.	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
Ledus.S5	AUGUSTUS	start_codon	10074759	10074761	.	-	0	transcript_id "Ledus.S5G101100.t1"; gene_id "Ledus.S5G101100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7983.t1 is derived from g12654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8321425	8324188	.	-	.	Ledus.S5G076100
Ledus.S5	AUGUSTUS	transcript	8321425	8324188	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	stop_codon	8321422	8321424	.	-	0	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	CDS	8321425	8321562	1	-	0	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	exon	8321425	8321562	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	intron	8321563	8321649	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	CDS	8321650	8321755	0.97	-	1	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	exon	8321650	8321755	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	intron	8321756	8321830	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	CDS	8321831	8321926	0.94	-	1	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	exon	8321831	8321926	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	intron	8321927	8322027	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	CDS	8322028	8322158	0.93	-	0	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	exon	8322028	8322158	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	intron	8322159	8322239	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	CDS	8322240	8322566	1	-	0	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	exon	8322240	8322566	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	intron	8322567	8322745	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	CDS	8322746	8322831	1	-	2	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	exon	8322746	8322831	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	intron	8322832	8322922	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	CDS	8322923	8323015	1	-	2	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	exon	8322923	8323015	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	intron	8323016	8323173	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	CDS	8323174	8323266	0.95	-	2	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	exon	8323174	8323266	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	intron	8323267	8323451	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	CDS	8323452	8323478	0.75	-	2	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	exon	8323452	8323478	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	intron	8323479	8323558	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	CDS	8323559	8323811	0.99	-	0	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	exon	8323559	8323811	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	intron	8323812	8324053	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	CDS	8324054	8324188	0.92	-	0	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	exon	8324054	8324188	.	-	.	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
Ledus.S5	AUGUSTUS	start_codon	8324186	8324188	.	-	0	transcript_id "Ledus.S5G076100.t1"; gene_id "Ledus.S5G076100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3141.t1 is derived from g576.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6236137	6237069	.	-	.	Ledus.S1G056200
Ledus.S1	AUGUSTUS	transcript	6236137	6237069	.	-	.	transcript_id "Ledus.S1G056200.t1"; gene_id "Ledus.S1G056200"
Ledus.S1	AUGUSTUS	stop_codon	6236134	6236136	.	-	0	transcript_id "Ledus.S1G056200.t1"; gene_id "Ledus.S1G056200"
Ledus.S1	AUGUSTUS	CDS	6236137	6236661	1	-	0	transcript_id "Ledus.S1G056200.t1"; gene_id "Ledus.S1G056200"
Ledus.S1	AUGUSTUS	exon	6236137	6236661	.	-	.	transcript_id "Ledus.S1G056200.t1"; gene_id "Ledus.S1G056200"
Ledus.S1	AUGUSTUS	intron	6236662	6236745	.	-	.	transcript_id "Ledus.S1G056200.t1"; gene_id "Ledus.S1G056200"
Ledus.S1	AUGUSTUS	CDS	6236746	6237069	0.64	-	0	transcript_id "Ledus.S1G056200.t1"; gene_id "Ledus.S1G056200"
Ledus.S1	AUGUSTUS	exon	6236746	6237069	.	-	.	transcript_id "Ledus.S1G056200.t1"; gene_id "Ledus.S1G056200"
Ledus.S1	AUGUSTUS	start_codon	6237067	6237069	.	-	0	transcript_id "Ledus.S1G056200.t1"; gene_id "Ledus.S1G056200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2131.t1 is derived from g8994.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14935260	14936586	.	-	.	Ledus.S2G201300
Ledus.S2	AUGUSTUS	transcript	14935260	14936586	.	-	.	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	stop_codon	14935257	14935259	.	-	0	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	CDS	14935260	14935476	0.91	-	1	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	exon	14935260	14935476	.	-	.	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	intron	14935477	14935563	.	-	.	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	CDS	14935564	14935740	1	-	1	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	exon	14935564	14935740	.	-	.	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	intron	14935741	14935829	.	-	.	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	CDS	14935830	14935990	1	-	0	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	exon	14935830	14935990	.	-	.	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	intron	14935991	14936070	.	-	.	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	CDS	14936071	14936124	1	-	0	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	exon	14936071	14936124	.	-	.	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	intron	14936125	14936231	.	-	.	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	CDS	14936232	14936354	0.44	-	0	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	exon	14936232	14936354	.	-	.	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	intron	14936355	14936439	.	-	.	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	CDS	14936440	14936586	0.82	-	0	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	exon	14936440	14936586	.	-	.	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
Ledus.S2	AUGUSTUS	start_codon	14936584	14936586	.	-	0	transcript_id "Ledus.S2G201300.t1"; gene_id "Ledus.S2G201300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1897.t1 is derived from g8760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13257861	13258617	.	+	.	Ledus.S2G177900
Ledus.S2	AUGUSTUS	transcript	13257861	13258617	.	+	.	transcript_id "Ledus.S2G177900.t1"; gene_id "Ledus.S2G177900"
Ledus.S2	AUGUSTUS	start_codon	13257861	13257863	.	+	0	transcript_id "Ledus.S2G177900.t1"; gene_id "Ledus.S2G177900"
Ledus.S2	AUGUSTUS	CDS	13257861	13258214	0.3	+	0	transcript_id "Ledus.S2G177900.t1"; gene_id "Ledus.S2G177900"
Ledus.S2	AUGUSTUS	exon	13257861	13258214	.	+	.	transcript_id "Ledus.S2G177900.t1"; gene_id "Ledus.S2G177900"
Ledus.S2	AUGUSTUS	intron	13258215	13258287	.	+	.	transcript_id "Ledus.S2G177900.t1"; gene_id "Ledus.S2G177900"
Ledus.S2	AUGUSTUS	CDS	13258288	13258403	0.86	+	0	transcript_id "Ledus.S2G177900.t1"; gene_id "Ledus.S2G177900"
Ledus.S2	AUGUSTUS	exon	13258288	13258403	.	+	.	transcript_id "Ledus.S2G177900.t1"; gene_id "Ledus.S2G177900"
Ledus.S2	AUGUSTUS	intron	13258404	13258505	.	+	.	transcript_id "Ledus.S2G177900.t1"; gene_id "Ledus.S2G177900"
Ledus.S2	AUGUSTUS	CDS	13258506	13258617	0.86	+	1	transcript_id "Ledus.S2G177900.t1"; gene_id "Ledus.S2G177900"
Ledus.S2	AUGUSTUS	exon	13258506	13258617	.	+	.	transcript_id "Ledus.S2G177900.t1"; gene_id "Ledus.S2G177900"
Ledus.S2	AUGUSTUS	stop_codon	13258618	13258620	.	+	0	transcript_id "Ledus.S2G177900.t1"; gene_id "Ledus.S2G177900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2196.t1 is derived from g9059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15892786	15895656	.	+	.	Ledus.S2G207800
Ledus.S2	AUGUSTUS	transcript	15892786	15895656	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	start_codon	15892786	15892788	.	+	0	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	CDS	15892786	15893317	0.37	+	0	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	exon	15892786	15893317	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	intron	15893318	15893940	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	CDS	15893941	15894044	0.65	+	2	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	exon	15893941	15894044	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	intron	15894045	15894294	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	CDS	15894295	15894375	1	+	0	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	exon	15894295	15894375	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	intron	15894376	15894462	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	CDS	15894463	15894552	1	+	0	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	exon	15894463	15894552	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	intron	15894553	15894619	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	CDS	15894620	15894789	1	+	0	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	exon	15894620	15894789	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	intron	15894790	15894872	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	CDS	15894873	15894942	1	+	1	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	exon	15894873	15894942	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	intron	15894943	15895028	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	CDS	15895029	15895108	1	+	0	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	exon	15895029	15895108	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	intron	15895109	15895202	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	CDS	15895203	15895265	0.89	+	1	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	exon	15895203	15895265	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	intron	15895266	15895367	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	CDS	15895368	15895444	0.74	+	1	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	exon	15895368	15895444	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	intron	15895445	15895558	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	CDS	15895559	15895656	0.75	+	2	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	exon	15895559	15895656	.	+	.	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
Ledus.S2	AUGUSTUS	stop_codon	15895657	15895659	.	+	0	transcript_id "Ledus.S2G207800.t1"; gene_id "Ledus.S2G207800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7054.t1 is derived from g6585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1087048	1087616	.	-	.	Ledus.C7G011500
Ledus.C7	AUGUSTUS	transcript	1087048	1087616	.	-	.	transcript_id "Ledus.C7G011500.t1"; gene_id "Ledus.C7G011500"
Ledus.C7	AUGUSTUS	stop_codon	1087045	1087047	.	-	0	transcript_id "Ledus.C7G011500.t1"; gene_id "Ledus.C7G011500"
Ledus.C7	AUGUSTUS	CDS	1087048	1087495	0.78	-	1	transcript_id "Ledus.C7G011500.t1"; gene_id "Ledus.C7G011500"
Ledus.C7	AUGUSTUS	exon	1087048	1087495	.	-	.	transcript_id "Ledus.C7G011500.t1"; gene_id "Ledus.C7G011500"
Ledus.C7	AUGUSTUS	intron	1087496	1087593	.	-	.	transcript_id "Ledus.C7G011500.t1"; gene_id "Ledus.C7G011500"
Ledus.C7	AUGUSTUS	CDS	1087594	1087616	0.51	-	0	transcript_id "Ledus.C7G011500.t1"; gene_id "Ledus.C7G011500"
Ledus.C7	AUGUSTUS	exon	1087594	1087616	.	-	.	transcript_id "Ledus.C7G011500.t1"; gene_id "Ledus.C7G011500"
Ledus.C7	AUGUSTUS	start_codon	1087614	1087616	.	-	0	transcript_id "Ledus.C7G011500.t1"; gene_id "Ledus.C7G011500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10401.t1 is derived from g11431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14803903	14822260	.	-	.	Ledus.S3G187800
Ledus.S3	AUGUSTUS	transcript	14803903	14822260	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	stop_codon	14803900	14803902	.	-	0	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14803903	14804994	0.92	-	0	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14803903	14804994	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14804995	14805091	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14805092	14805595	0.92	-	0	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14805092	14805595	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14805596	14805763	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14805764	14806140	1	-	2	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14805764	14806140	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14806141	14806231	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14806232	14806874	1	-	0	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14806232	14806874	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14806875	14807047	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14807048	14807191	1	-	0	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14807048	14807191	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14807192	14807365	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14807366	14807764	0.88	-	0	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14807366	14807764	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14807765	14807866	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14807867	14807910	0.43	-	2	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14807867	14807910	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14807911	14807994	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14807995	14808089	0.44	-	1	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14807995	14808089	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14808090	14808202	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14808203	14812822	0.89	-	1	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14808203	14812822	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14812823	14812993	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14812994	14813234	0.88	-	2	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14812994	14813234	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14813235	14813355	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14813356	14813536	0.92	-	0	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14813356	14813536	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14813537	14813642	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14813643	14814254	0.83	-	0	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14813643	14814254	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14814255	14814463	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14814464	14820753	0.99	-	2	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14814464	14820753	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14820754	14820956	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14820957	14821122	1	-	0	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14820957	14821122	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14821123	14821705	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14821706	14821827	1	-	2	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14821706	14821827	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	intron	14821828	14822034	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	CDS	14822035	14822260	1	-	0	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	exon	14822035	14822260	.	-	.	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
Ledus.S3	AUGUSTUS	start_codon	14822258	14822260	.	-	0	transcript_id "Ledus.S3G187800.t1"; gene_id "Ledus.S3G187800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5430.t1 is derived from g2869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24126816	24127398	.	+	.	Ledus.S1G285100
Ledus.S1	AUGUSTUS	transcript	24126816	24127398	.	+	.	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	start_codon	24126816	24126818	.	+	0	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	CDS	24126816	24126950	0.77	+	0	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	exon	24126816	24126950	.	+	.	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	intron	24126951	24127026	.	+	.	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	CDS	24127027	24127095	0.99	+	0	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	exon	24127027	24127095	.	+	.	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	intron	24127096	24127214	.	+	.	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	CDS	24127215	24127311	0.94	+	0	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	exon	24127215	24127311	.	+	.	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	intron	24127312	24127384	.	+	.	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	CDS	24127385	24127398	0.95	+	2	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	exon	24127385	24127398	.	+	.	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
Ledus.S1	AUGUSTUS	stop_codon	24127399	24127401	.	+	0	transcript_id "Ledus.S1G285100.t1"; gene_id "Ledus.S1G285100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4340.t1 is derived from g1776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16466068	16467834	.	+	.	Ledus.S1G176100
Ledus.S1	AUGUSTUS	transcript	16466068	16467834	.	+	.	transcript_id "Ledus.S1G176100.t1"; gene_id "Ledus.S1G176100"
Ledus.S1	AUGUSTUS	start_codon	16466068	16466070	.	+	0	transcript_id "Ledus.S1G176100.t1"; gene_id "Ledus.S1G176100"
Ledus.S1	AUGUSTUS	CDS	16466068	16467347	0.53	+	0	transcript_id "Ledus.S1G176100.t1"; gene_id "Ledus.S1G176100"
Ledus.S1	AUGUSTUS	exon	16466068	16467347	.	+	.	transcript_id "Ledus.S1G176100.t1"; gene_id "Ledus.S1G176100"
Ledus.S1	AUGUSTUS	intron	16467348	16467434	.	+	.	transcript_id "Ledus.S1G176100.t1"; gene_id "Ledus.S1G176100"
Ledus.S1	AUGUSTUS	CDS	16467435	16467834	0.99	+	1	transcript_id "Ledus.S1G176100.t1"; gene_id "Ledus.S1G176100"
Ledus.S1	AUGUSTUS	exon	16467435	16467834	.	+	.	transcript_id "Ledus.S1G176100.t1"; gene_id "Ledus.S1G176100"
Ledus.S1	AUGUSTUS	stop_codon	16467835	16467837	.	+	0	transcript_id "Ledus.S1G176100.t1"; gene_id "Ledus.S1G176100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11023.t1 is derived from g4641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1215468	1217296	.	+	.	Ledus.S4G017900
Ledus.S4	AUGUSTUS	transcript	1215468	1217296	.	+	.	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	start_codon	1215468	1215470	.	+	0	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	CDS	1215468	1215491	0.51	+	0	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	exon	1215468	1215491	.	+	.	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	intron	1215492	1216322	.	+	.	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	CDS	1216323	1216390	0.45	+	0	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	exon	1216323	1216390	.	+	.	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	intron	1216391	1216491	.	+	.	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	CDS	1216492	1216564	0.45	+	1	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	exon	1216492	1216564	.	+	.	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	intron	1216565	1216641	.	+	.	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	CDS	1216642	1216741	0.84	+	0	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	exon	1216642	1216741	.	+	.	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	intron	1216742	1216916	.	+	.	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	CDS	1216917	1217021	0.86	+	2	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	exon	1216917	1217021	.	+	.	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	intron	1217022	1217117	.	+	.	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	CDS	1217118	1217296	0.9	+	2	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	exon	1217118	1217296	.	+	.	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
Ledus.S4	AUGUSTUS	stop_codon	1217297	1217299	.	+	0	transcript_id "Ledus.S4G017900.t1"; gene_id "Ledus.S4G017900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg484.t1 is derived from g7345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2841079	2843515	.	-	.	Ledus.S2G036600
Ledus.S2	AUGUSTUS	transcript	2841079	2843515	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	stop_codon	2841076	2841078	.	-	0	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	CDS	2841079	2841203	0.41	-	2	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	exon	2841079	2841203	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	intron	2841204	2841313	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	CDS	2841314	2841456	0.82	-	1	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	exon	2841314	2841456	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	intron	2841457	2841550	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	CDS	2841551	2841768	1	-	0	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	exon	2841551	2841768	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	intron	2841769	2841864	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	CDS	2841865	2842433	0.99	-	2	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	exon	2841865	2842433	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	intron	2842434	2842534	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	CDS	2842535	2842666	0.99	-	2	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	exon	2842535	2842666	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	intron	2842667	2842753	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	CDS	2842754	2842995	1	-	1	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	exon	2842754	2842995	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	intron	2842996	2843234	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	CDS	2843235	2843262	0.66	-	2	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	exon	2843235	2843262	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	intron	2843263	2843508	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	CDS	2843509	2843515	0.71	-	0	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	exon	2843509	2843515	.	-	.	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
Ledus.S2	AUGUSTUS	start_codon	2843513	2843515	.	-	0	transcript_id "Ledus.S2G036600.t1"; gene_id "Ledus.S2G036600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9036.t1 is derived from g10066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3961870	3962463	.	-	.	Ledus.S3G051300
Ledus.S3	AUGUSTUS	transcript	3961870	3962463	.	-	.	transcript_id "Ledus.S3G051300.t1"; gene_id "Ledus.S3G051300"
Ledus.S3	AUGUSTUS	stop_codon	3961867	3961869	.	-	0	transcript_id "Ledus.S3G051300.t1"; gene_id "Ledus.S3G051300"
Ledus.S3	AUGUSTUS	CDS	3961870	3962144	0.76	-	2	transcript_id "Ledus.S3G051300.t1"; gene_id "Ledus.S3G051300"
Ledus.S3	AUGUSTUS	exon	3961870	3962144	.	-	.	transcript_id "Ledus.S3G051300.t1"; gene_id "Ledus.S3G051300"
Ledus.S3	AUGUSTUS	intron	3962145	3962405	.	-	.	transcript_id "Ledus.S3G051300.t1"; gene_id "Ledus.S3G051300"
Ledus.S3	AUGUSTUS	CDS	3962406	3962463	0.71	-	0	transcript_id "Ledus.S3G051300.t1"; gene_id "Ledus.S3G051300"
Ledus.S3	AUGUSTUS	exon	3962406	3962463	.	-	.	transcript_id "Ledus.S3G051300.t1"; gene_id "Ledus.S3G051300"
Ledus.S3	AUGUSTUS	start_codon	3962461	3962463	.	-	0	transcript_id "Ledus.S3G051300.t1"; gene_id "Ledus.S3G051300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2028.t1 is derived from g8891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14252859	14253961	.	+	.	Ledus.S2G191000
Ledus.S2	AUGUSTUS	transcript	14252859	14253961	.	+	.	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	start_codon	14252859	14252861	.	+	0	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	CDS	14252859	14253149	0.99	+	0	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	exon	14252859	14253149	.	+	.	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	intron	14253150	14253248	.	+	.	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	CDS	14253249	14253475	1	+	0	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	exon	14253249	14253475	.	+	.	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	intron	14253476	14253554	.	+	.	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	CDS	14253555	14253655	1	+	1	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	exon	14253555	14253655	.	+	.	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	intron	14253656	14253749	.	+	.	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	CDS	14253750	14253961	0.94	+	2	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	exon	14253750	14253961	.	+	.	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
Ledus.S2	AUGUSTUS	stop_codon	14253962	14253964	.	+	0	transcript_id "Ledus.S2G191000.t1"; gene_id "Ledus.S2G191000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10750.t1 is derived from g11781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17485646	17486883	.	-	.	Ledus.S3G222700
Ledus.S3	AUGUSTUS	transcript	17485646	17486883	.	-	.	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	stop_codon	17485643	17485645	.	-	0	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	CDS	17485646	17485675	1	-	0	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	exon	17485646	17485675	.	-	.	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	intron	17485676	17485926	.	-	.	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	CDS	17485927	17485972	1	-	1	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	exon	17485927	17485972	.	-	.	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	intron	17485973	17486137	.	-	.	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	CDS	17486138	17486202	1	-	0	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	exon	17486138	17486202	.	-	.	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	intron	17486203	17486498	.	-	.	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	CDS	17486499	17486564	0.94	-	0	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	exon	17486499	17486564	.	-	.	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	intron	17486565	17486712	.	-	.	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	CDS	17486713	17486883	0.62	-	0	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	exon	17486713	17486883	.	-	.	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
Ledus.S3	AUGUSTUS	start_codon	17486881	17486883	.	-	0	transcript_id "Ledus.S3G222700.t1"; gene_id "Ledus.S3G222700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7656.t1 is derived from g12327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4830519	4832041	.	-	.	Ledus.S5G043400
Ledus.S5	AUGUSTUS	transcript	4830519	4832041	.	-	.	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	stop_codon	4830516	4830518	.	-	0	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	CDS	4830519	4830746	0.8	-	0	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	exon	4830519	4830746	.	-	.	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	intron	4830747	4830849	.	-	.	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	CDS	4830850	4830916	0.73	-	1	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	exon	4830850	4830916	.	-	.	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	intron	4830917	4831114	.	-	.	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	CDS	4831115	4831361	0.45	-	2	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	exon	4831115	4831361	.	-	.	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	intron	4831362	4831578	.	-	.	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	CDS	4831579	4832041	0.19	-	0	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	exon	4831579	4832041	.	-	.	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
Ledus.S5	AUGUSTUS	start_codon	4832039	4832041	.	-	0	transcript_id "Ledus.S5G043400.t1"; gene_id "Ledus.S5G043400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8170.t1 is derived from g12841.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9602873	9603526	.	-	.	Ledus.S5G094800
Ledus.S5	AUGUSTUS	transcript	9602873	9603526	.	-	.	transcript_id "Ledus.S5G094800.t1"; gene_id "Ledus.S5G094800"
Ledus.S5	AUGUSTUS	stop_codon	9602870	9602872	.	-	0	transcript_id "Ledus.S5G094800.t1"; gene_id "Ledus.S5G094800"
Ledus.S5	AUGUSTUS	CDS	9602873	9603526	0.3	-	0	transcript_id "Ledus.S5G094800.t1"; gene_id "Ledus.S5G094800"
Ledus.S5	AUGUSTUS	exon	9602873	9603526	.	-	.	transcript_id "Ledus.S5G094800.t1"; gene_id "Ledus.S5G094800"
Ledus.S5	AUGUSTUS	start_codon	9603524	9603526	.	-	0	transcript_id "Ledus.S5G094800.t1"; gene_id "Ledus.S5G094800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8787.t1 is derived from g9817.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1974032	1976095	.	+	.	Ledus.S3G026400
Ledus.S3	AUGUSTUS	transcript	1974055	1976095	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	start_codon	1974055	1974057	.	+	0	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1974055	1974072	0.93	+	0	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1974055	1974072	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1974073	1974141	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1974142	1974161	0.99	+	0	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1974142	1974161	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1974162	1974366	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1974367	1974481	0.99	+	1	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1974367	1974481	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1974482	1974554	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1974555	1974623	1	+	0	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1974555	1974623	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1974624	1974695	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1974696	1974767	1	+	0	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1974696	1974767	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1974768	1974837	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1974838	1974945	1	+	0	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1974838	1974945	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1974946	1975047	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1975048	1975104	0.67	+	0	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1975048	1975104	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1975105	1975215	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1975216	1975354	1	+	0	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1975216	1975354	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1975355	1975437	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1975438	1975502	1	+	2	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1975438	1975502	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1975503	1975617	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1975618	1975668	1	+	0	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1975618	1975668	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1975669	1975758	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1975759	1975930	1	+	0	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1975759	1975930	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1975931	1976024	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1976025	1976095	0.36	+	2	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1976025	1976095	.	+	.	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	stop_codon	1976096	1976098	.	+	0	transcript_id "Ledus.S3G026400.t1"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	transcript	1974032	1976095	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	start_codon	1974032	1974034	.	+	0	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1974032	1974072	1	+	0	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1974032	1974072	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1974073	1974366	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1974367	1974481	1	+	1	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1974367	1974481	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1974482	1974554	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1974555	1974623	1	+	0	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1974555	1974623	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1974624	1974695	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1974696	1974767	1	+	0	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1974696	1974767	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1974768	1974837	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1974838	1974945	1	+	0	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1974838	1974945	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1974946	1975047	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1975048	1975104	0.66	+	0	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1975048	1975104	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1975105	1975215	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1975216	1975354	1	+	0	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1975216	1975354	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1975355	1975437	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1975438	1975502	1	+	2	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1975438	1975502	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1975503	1975617	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1975618	1975668	1	+	0	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1975618	1975668	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1975669	1975758	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1975759	1975930	1	+	0	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1975759	1975930	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	intron	1975931	1976024	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	CDS	1976025	1976095	0.3	+	2	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	exon	1976025	1976095	.	+	.	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
Ledus.S3	AUGUSTUS	stop_codon	1976096	1976098	.	+	0	transcript_id "Ledus.S3G026400.t2"; gene_id "Ledus.S3G026400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9045.t1 is derived from g10075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4135493	4135729	.	+	.	Ledus.S3G052200
Ledus.S3	AUGUSTUS	transcript	4135493	4135729	.	+	.	transcript_id "Ledus.S3G052200.t1"; gene_id "Ledus.S3G052200"
Ledus.S3	AUGUSTUS	start_codon	4135493	4135495	.	+	0	transcript_id "Ledus.S3G052200.t1"; gene_id "Ledus.S3G052200"
Ledus.S3	AUGUSTUS	CDS	4135493	4135729	0.74	+	0	transcript_id "Ledus.S3G052200.t1"; gene_id "Ledus.S3G052200"
Ledus.S3	AUGUSTUS	exon	4135493	4135729	.	+	.	transcript_id "Ledus.S3G052200.t1"; gene_id "Ledus.S3G052200"
Ledus.S3	AUGUSTUS	stop_codon	4135730	4135732	.	+	0	transcript_id "Ledus.S3G052200.t1"; gene_id "Ledus.S3G052200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9496.t1 is derived from g10526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7439845	7442792	.	+	.	Ledus.S3G097300
Ledus.S3	AUGUSTUS	transcript	7439845	7442792	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	start_codon	7439845	7439847	.	+	0	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	CDS	7439845	7439897	0.34	+	0	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	exon	7439845	7439897	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	intron	7439898	7439980	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	CDS	7439981	7440070	0.67	+	1	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	exon	7439981	7440070	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	intron	7440071	7440361	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	CDS	7440362	7440793	0.98	+	1	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	exon	7440362	7440793	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	intron	7440794	7440936	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	CDS	7440937	7441088	0.9	+	1	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	exon	7440937	7441088	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	intron	7441089	7441190	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	CDS	7441191	7441332	0.98	+	2	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	exon	7441191	7441332	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	intron	7441333	7441420	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	CDS	7441421	7441577	1	+	1	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	exon	7441421	7441577	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	intron	7441578	7441714	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	CDS	7441715	7441762	1	+	0	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	exon	7441715	7441762	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	intron	7441763	7441868	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	CDS	7441869	7441955	0.99	+	0	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	exon	7441869	7441955	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	intron	7441956	7442059	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	CDS	7442060	7442188	1	+	0	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	exon	7442060	7442188	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	intron	7442189	7442350	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	CDS	7442351	7442407	1	+	0	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	exon	7442351	7442407	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	intron	7442408	7442519	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	CDS	7442520	7442603	0.71	+	0	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	exon	7442520	7442603	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	intron	7442604	7442714	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	CDS	7442715	7442792	0.77	+	0	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	exon	7442715	7442792	.	+	.	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
Ledus.S3	AUGUSTUS	stop_codon	7442793	7442795	.	+	0	transcript_id "Ledus.S3G097300.t1"; gene_id "Ledus.S3G097300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2411.t1 is derived from g9274.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17981166	17981957	.	-	.	Ledus.S2G229300
Ledus.S2	AUGUSTUS	transcript	17981166	17981957	.	-	.	transcript_id "Ledus.S2G229300.t1"; gene_id "Ledus.S2G229300"
Ledus.S2	AUGUSTUS	stop_codon	17981163	17981165	.	-	0	transcript_id "Ledus.S2G229300.t1"; gene_id "Ledus.S2G229300"
Ledus.S2	AUGUSTUS	CDS	17981166	17981957	1	-	0	transcript_id "Ledus.S2G229300.t1"; gene_id "Ledus.S2G229300"
Ledus.S2	AUGUSTUS	exon	17981166	17981957	.	-	.	transcript_id "Ledus.S2G229300.t1"; gene_id "Ledus.S2G229300"
Ledus.S2	AUGUSTUS	start_codon	17981955	17981957	.	-	0	transcript_id "Ledus.S2G229300.t1"; gene_id "Ledus.S2G229300"
Ledus.S2	AUGUSTUS	transcript	17981166	17981582	.	-	.	transcript_id "Ledus.S2G229300.t2"; gene_id "Ledus.S2G229300"
Ledus.S2	AUGUSTUS	stop_codon	17981163	17981165	.	-	0	transcript_id "Ledus.S2G229300.t2"; gene_id "Ledus.S2G229300"
Ledus.S2	AUGUSTUS	CDS	17981166	17981582	0.85	-	0	transcript_id "Ledus.S2G229300.t2"; gene_id "Ledus.S2G229300"
Ledus.S2	AUGUSTUS	exon	17981166	17981582	.	-	.	transcript_id "Ledus.S2G229300.t2"; gene_id "Ledus.S2G229300"
Ledus.S2	AUGUSTUS	start_codon	17981580	17981582	.	-	0	transcript_id "Ledus.S2G229300.t2"; gene_id "Ledus.S2G229300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4845.t1 is derived from g2283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20113509	20114290	.	-	.	Ledus.S1G226600
Ledus.S1	AUGUSTUS	transcript	20113509	20114290	.	-	.	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	stop_codon	20113506	20113508	.	-	0	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	CDS	20113509	20113617	0.82	-	1	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	exon	20113509	20113617	.	-	.	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	intron	20113618	20113700	.	-	.	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	CDS	20113701	20113807	0.75	-	0	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	exon	20113701	20113807	.	-	.	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	intron	20113808	20113954	.	-	.	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	CDS	20113955	20114057	1	-	1	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	exon	20113955	20114057	.	-	.	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	intron	20114058	20114198	.	-	.	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	CDS	20114199	20114290	0.78	-	0	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	exon	20114199	20114290	.	-	.	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
Ledus.S1	AUGUSTUS	start_codon	20114288	20114290	.	-	0	transcript_id "Ledus.S1G226600.t1"; gene_id "Ledus.S1G226600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2116.t1 is derived from g8979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14794541	14796766	.	+	.	Ledus.S2G199800
Ledus.S2	AUGUSTUS	transcript	14794541	14796766	.	+	.	transcript_id "Ledus.S2G199800.t1"; gene_id "Ledus.S2G199800"
Ledus.S2	AUGUSTUS	start_codon	14794541	14794543	.	+	0	transcript_id "Ledus.S2G199800.t1"; gene_id "Ledus.S2G199800"
Ledus.S2	AUGUSTUS	CDS	14794541	14796766	0.9	+	0	transcript_id "Ledus.S2G199800.t1"; gene_id "Ledus.S2G199800"
Ledus.S2	AUGUSTUS	exon	14794541	14796766	.	+	.	transcript_id "Ledus.S2G199800.t1"; gene_id "Ledus.S2G199800"
Ledus.S2	AUGUSTUS	stop_codon	14796767	14796769	.	+	0	transcript_id "Ledus.S2G199800.t1"; gene_id "Ledus.S2G199800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11885.t1 is derived from g5504.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7529984	7534207	.	+	.	Ledus.S4G104100
Ledus.S4	AUGUSTUS	transcript	7529984	7531757	.	+	.	transcript_id "Ledus.S4G104100.t1"; gene_id "Ledus.S4G104100"
Ledus.S4	AUGUSTUS	start_codon	7529984	7529986	.	+	0	transcript_id "Ledus.S4G104100.t1"; gene_id "Ledus.S4G104100"
Ledus.S4	AUGUSTUS	CDS	7529984	7531592	0.92	+	0	transcript_id "Ledus.S4G104100.t1"; gene_id "Ledus.S4G104100"
Ledus.S4	AUGUSTUS	exon	7529984	7531592	.	+	.	transcript_id "Ledus.S4G104100.t1"; gene_id "Ledus.S4G104100"
Ledus.S4	AUGUSTUS	intron	7531593	7531695	.	+	.	transcript_id "Ledus.S4G104100.t1"; gene_id "Ledus.S4G104100"
Ledus.S4	AUGUSTUS	CDS	7531696	7531757	0.91	+	2	transcript_id "Ledus.S4G104100.t1"; gene_id "Ledus.S4G104100"
Ledus.S4	AUGUSTUS	exon	7531696	7531757	.	+	.	transcript_id "Ledus.S4G104100.t1"; gene_id "Ledus.S4G104100"
Ledus.S4	AUGUSTUS	stop_codon	7531758	7531760	.	+	0	transcript_id "Ledus.S4G104100.t1"; gene_id "Ledus.S4G104100"
Ledus.S4	AUGUSTUS	transcript	7529984	7534207	.	+	.	transcript_id "Ledus.S4G104100.t2"; gene_id "Ledus.S4G104100"
Ledus.S4	AUGUSTUS	start_codon	7529984	7529986	.	+	0	transcript_id "Ledus.S4G104100.t2"; gene_id "Ledus.S4G104100"
Ledus.S4	AUGUSTUS	CDS	7529984	7534207	0.96	+	0	transcript_id "Ledus.S4G104100.t2"; gene_id "Ledus.S4G104100"
Ledus.S4	AUGUSTUS	exon	7529984	7534207	.	+	.	transcript_id "Ledus.S4G104100.t2"; gene_id "Ledus.S4G104100"
Ledus.S4	AUGUSTUS	stop_codon	7534208	7534210	.	+	0	transcript_id "Ledus.S4G104100.t2"; gene_id "Ledus.S4G104100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7182.t1 is derived from g6713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2024384	2027347	.	+	.	Ledus.C7G024300
Ledus.C7	AUGUSTUS	transcript	2024384	2027347	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	start_codon	2024384	2024386	.	+	0	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	CDS	2024384	2024566	0.99	+	0	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	exon	2024384	2024566	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	intron	2024567	2024746	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	CDS	2024747	2024840	0.94	+	0	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	exon	2024747	2024840	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	intron	2024841	2024923	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	CDS	2024924	2024994	0.95	+	2	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	exon	2024924	2024994	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	intron	2024995	2025135	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	CDS	2025136	2025224	1	+	0	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	exon	2025136	2025224	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	intron	2025225	2025324	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	CDS	2025325	2025568	1	+	1	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	exon	2025325	2025568	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	intron	2025569	2025666	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	CDS	2025667	2025779	1	+	0	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	exon	2025667	2025779	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	intron	2025780	2025870	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	CDS	2025871	2025961	1	+	1	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	exon	2025871	2025961	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	intron	2025962	2026040	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	CDS	2026041	2026169	1	+	0	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	exon	2026041	2026169	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	intron	2026170	2026260	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	CDS	2026261	2026823	1	+	0	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	exon	2026261	2026823	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	intron	2026824	2026911	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	CDS	2026912	2027347	0.68	+	1	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	exon	2026912	2027347	.	+	.	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
Ledus.C7	AUGUSTUS	stop_codon	2027348	2027350	.	+	0	transcript_id "Ledus.C7G024300.t1"; gene_id "Ledus.C7G024300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6648.t1 is derived from g4091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32852358	32852912	.	+	.	Ledus.S1G406900
Ledus.S1	AUGUSTUS	transcript	32852358	32852912	.	+	.	transcript_id "Ledus.S1G406900.t1"; gene_id "Ledus.S1G406900"
Ledus.S1	AUGUSTUS	start_codon	32852358	32852360	.	+	0	transcript_id "Ledus.S1G406900.t1"; gene_id "Ledus.S1G406900"
Ledus.S1	AUGUSTUS	CDS	32852358	32852663	0.94	+	0	transcript_id "Ledus.S1G406900.t1"; gene_id "Ledus.S1G406900"
Ledus.S1	AUGUSTUS	exon	32852358	32852663	.	+	.	transcript_id "Ledus.S1G406900.t1"; gene_id "Ledus.S1G406900"
Ledus.S1	AUGUSTUS	intron	32852664	32852738	.	+	.	transcript_id "Ledus.S1G406900.t1"; gene_id "Ledus.S1G406900"
Ledus.S1	AUGUSTUS	CDS	32852739	32852912	1	+	0	transcript_id "Ledus.S1G406900.t1"; gene_id "Ledus.S1G406900"
Ledus.S1	AUGUSTUS	exon	32852739	32852912	.	+	.	transcript_id "Ledus.S1G406900.t1"; gene_id "Ledus.S1G406900"
Ledus.S1	AUGUSTUS	stop_codon	32852913	32852915	.	+	0	transcript_id "Ledus.S1G406900.t1"; gene_id "Ledus.S1G406900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9131.t1 is derived from g10161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4728880	4731078	.	+	.	Ledus.S3G060800
Ledus.S3	AUGUSTUS	transcript	4728880	4731078	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	start_codon	4728880	4728882	.	+	0	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	CDS	4728880	4728921	0.86	+	0	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	exon	4728880	4728921	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	intron	4728922	4729049	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	CDS	4729050	4729103	0.96	+	0	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	exon	4729050	4729103	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	intron	4729104	4729216	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	CDS	4729217	4729390	0.95	+	0	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	exon	4729217	4729390	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	intron	4729391	4729504	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	CDS	4729505	4729576	0.99	+	0	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	exon	4729505	4729576	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	intron	4729577	4729698	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	CDS	4729699	4729758	1	+	0	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	exon	4729699	4729758	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	intron	4729759	4729841	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	CDS	4729842	4729951	1	+	0	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	exon	4729842	4729951	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	intron	4729952	4730126	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	CDS	4730127	4730426	1	+	1	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	exon	4730127	4730426	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	intron	4730427	4730556	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	CDS	4730557	4730748	0.99	+	1	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	exon	4730557	4730748	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	intron	4730749	4730854	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	CDS	4730855	4730906	1	+	1	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	exon	4730855	4730906	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	intron	4730907	4731030	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	CDS	4731031	4731078	1	+	0	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	exon	4731031	4731078	.	+	.	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
Ledus.S3	AUGUSTUS	stop_codon	4731079	4731081	.	+	0	transcript_id "Ledus.S3G060800.t1"; gene_id "Ledus.S3G060800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8834.t1 is derived from g9864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2207538	2211246	.	-	.	Ledus.S3G031100
Ledus.S3	AUGUSTUS	transcript	2207538	2211246	.	-	.	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	stop_codon	2207535	2207537	.	-	0	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	CDS	2207538	2210660	0.82	-	0	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	exon	2207538	2210660	.	-	.	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	intron	2210661	2210743	.	-	.	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	CDS	2210744	2210841	1	-	2	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	exon	2210744	2210841	.	-	.	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	intron	2210842	2210919	.	-	.	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	CDS	2210920	2211035	1	-	1	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	exon	2210920	2211035	.	-	.	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	intron	2211036	2211127	.	-	.	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	CDS	2211128	2211246	1	-	0	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	exon	2211128	2211246	.	-	.	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
Ledus.S3	AUGUSTUS	start_codon	2211244	2211246	.	-	0	transcript_id "Ledus.S3G031100.t1"; gene_id "Ledus.S3G031100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12751.t1 is derived from g6373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14215806	14217241	.	-	.	Ledus.S4G190700
Ledus.S4	AUGUSTUS	transcript	14215806	14217241	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	stop_codon	14215803	14215805	.	-	0	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	CDS	14215806	14215914	0.99	-	1	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	exon	14215806	14215914	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	intron	14215915	14216037	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	CDS	14216038	14216123	0.99	-	0	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	exon	14216038	14216123	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	intron	14216124	14216211	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	CDS	14216212	14216292	1	-	0	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	exon	14216212	14216292	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	intron	14216293	14216433	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	CDS	14216434	14216468	1	-	2	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	exon	14216434	14216468	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	intron	14216469	14216581	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	CDS	14216582	14216648	0.91	-	0	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	exon	14216582	14216648	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	intron	14216649	14216748	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	CDS	14216749	14216829	1	-	0	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	exon	14216749	14216829	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	intron	14216830	14216914	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	CDS	14216915	14217094	1	-	0	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	exon	14216915	14217094	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	intron	14217095	14217178	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	CDS	14217179	14217241	0.82	-	0	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	exon	14217179	14217241	.	-	.	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
Ledus.S4	AUGUSTUS	start_codon	14217239	14217241	.	-	0	transcript_id "Ledus.S4G190700.t1"; gene_id "Ledus.S4G190700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9351.t1 is derived from g10381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6309361	6311580	.	+	.	Ledus.S3G082800
Ledus.S3	AUGUSTUS	transcript	6309361	6311580	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	start_codon	6309361	6309363	.	+	0	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	CDS	6309361	6309537	0.53	+	0	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	exon	6309361	6309537	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	intron	6309538	6309634	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	CDS	6309635	6309695	1	+	0	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	exon	6309635	6309695	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	intron	6309696	6309775	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	CDS	6309776	6309996	1	+	2	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	exon	6309776	6309996	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	intron	6309997	6310140	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	CDS	6310141	6310228	1	+	0	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	exon	6310141	6310228	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	intron	6310229	6310336	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	CDS	6310337	6310509	0.94	+	2	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	exon	6310337	6310509	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	intron	6310510	6310613	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	CDS	6310614	6310760	1	+	0	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	exon	6310614	6310760	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	intron	6310761	6310889	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	CDS	6310890	6311024	1	+	0	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	exon	6310890	6311024	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	intron	6311025	6311208	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	CDS	6311209	6311580	1	+	0	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	exon	6311209	6311580	.	+	.	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
Ledus.S3	AUGUSTUS	stop_codon	6311581	6311583	.	+	0	transcript_id "Ledus.S3G082800.t1"; gene_id "Ledus.S3G082800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg817.t1 is derived from g7678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5302716	5303936	.	+	.	Ledus.S2G069900
Ledus.S2	AUGUSTUS	transcript	5302716	5303936	.	+	.	transcript_id "Ledus.S2G069900.t1"; gene_id "Ledus.S2G069900"
Ledus.S2	AUGUSTUS	start_codon	5302716	5302718	.	+	0	transcript_id "Ledus.S2G069900.t1"; gene_id "Ledus.S2G069900"
Ledus.S2	AUGUSTUS	CDS	5302716	5302898	1	+	0	transcript_id "Ledus.S2G069900.t1"; gene_id "Ledus.S2G069900"
Ledus.S2	AUGUSTUS	exon	5302716	5302898	.	+	.	transcript_id "Ledus.S2G069900.t1"; gene_id "Ledus.S2G069900"
Ledus.S2	AUGUSTUS	intron	5302899	5302991	.	+	.	transcript_id "Ledus.S2G069900.t1"; gene_id "Ledus.S2G069900"
Ledus.S2	AUGUSTUS	CDS	5302992	5303501	1	+	0	transcript_id "Ledus.S2G069900.t1"; gene_id "Ledus.S2G069900"
Ledus.S2	AUGUSTUS	exon	5302992	5303501	.	+	.	transcript_id "Ledus.S2G069900.t1"; gene_id "Ledus.S2G069900"
Ledus.S2	AUGUSTUS	intron	5303502	5303645	.	+	.	transcript_id "Ledus.S2G069900.t1"; gene_id "Ledus.S2G069900"
Ledus.S2	AUGUSTUS	CDS	5303646	5303936	1	+	0	transcript_id "Ledus.S2G069900.t1"; gene_id "Ledus.S2G069900"
Ledus.S2	AUGUSTUS	exon	5303646	5303936	.	+	.	transcript_id "Ledus.S2G069900.t1"; gene_id "Ledus.S2G069900"
Ledus.S2	AUGUSTUS	stop_codon	5303937	5303939	.	+	0	transcript_id "Ledus.S2G069900.t1"; gene_id "Ledus.S2G069900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6895.t1 is derived from g4339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35052567	35054246	.	-	.	Ledus.S1G431600
Ledus.S1	AUGUSTUS	transcript	35052567	35054246	.	-	.	transcript_id "Ledus.S1G431600.t1"; gene_id "Ledus.S1G431600"
Ledus.S1	AUGUSTUS	stop_codon	35052564	35052566	.	-	0	transcript_id "Ledus.S1G431600.t1"; gene_id "Ledus.S1G431600"
Ledus.S1	AUGUSTUS	CDS	35052567	35054003	1	-	0	transcript_id "Ledus.S1G431600.t1"; gene_id "Ledus.S1G431600"
Ledus.S1	AUGUSTUS	exon	35052567	35054003	.	-	.	transcript_id "Ledus.S1G431600.t1"; gene_id "Ledus.S1G431600"
Ledus.S1	AUGUSTUS	intron	35054004	35054102	.	-	.	transcript_id "Ledus.S1G431600.t1"; gene_id "Ledus.S1G431600"
Ledus.S1	AUGUSTUS	CDS	35054103	35054246	1	-	0	transcript_id "Ledus.S1G431600.t1"; gene_id "Ledus.S1G431600"
Ledus.S1	AUGUSTUS	exon	35054103	35054246	.	-	.	transcript_id "Ledus.S1G431600.t1"; gene_id "Ledus.S1G431600"
Ledus.S1	AUGUSTUS	start_codon	35054244	35054246	.	-	0	transcript_id "Ledus.S1G431600.t1"; gene_id "Ledus.S1G431600"
# This transcript jg6158.t2 is derived from g3601.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6159.t1 is derived from g3602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29328180	29331821	.	-	.	Ledus.S1G358000
Ledus.S1	AUGUSTUS	transcript	29328180	29331821	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	stop_codon	29328177	29328179	.	-	0	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29328180	29328309	0.77	-	1	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29328180	29328309	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29328310	29328408	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29328409	29328502	1	-	2	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29328409	29328502	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29328503	29328599	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29328600	29328736	1	-	1	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29328600	29328736	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29328737	29328891	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29328892	29328986	1	-	0	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29328892	29328986	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29328987	29329117	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29329118	29329214	1	-	1	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29329118	29329214	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29329215	29329308	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29329309	29329480	1	-	2	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29329309	29329480	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29329481	29329578	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29329579	29329639	1	-	0	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29329579	29329639	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29329640	29329746	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29329747	29329848	1	-	0	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29329747	29329848	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29329849	29330022	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29330023	29330137	1	-	1	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29330023	29330137	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29330138	29330232	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29330233	29330387	1	-	0	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29330233	29330387	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29330388	29330476	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29330477	29330547	1	-	2	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29330477	29330547	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29330548	29330626	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29330627	29330738	1	-	0	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29330627	29330738	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29330739	29330831	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29330832	29330972	1	-	0	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29330832	29330972	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29330973	29331073	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29331074	29331205	0.99	-	0	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29331074	29331205	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	intron	29331206	29331311	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	CDS	29331312	29331821	0.73	-	0	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	exon	29331312	29331821	.	-	.	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
Ledus.S1	AUGUSTUS	start_codon	29331819	29331821	.	-	0	transcript_id "Ledus.S1G358000.t1"; gene_id "Ledus.S1G358000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5985.t1 is derived from g3428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28163457	28164796	.	-	.	Ledus.S1G340600
Ledus.S1	AUGUSTUS	transcript	28163457	28164796	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	stop_codon	28163454	28163456	.	-	0	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	CDS	28163457	28163543	1	-	0	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	exon	28163457	28163543	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	intron	28163544	28163630	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	CDS	28163631	28163679	1	-	1	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	exon	28163631	28163679	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	intron	28163680	28163780	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	CDS	28163781	28163842	1	-	0	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	exon	28163781	28163842	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	intron	28163843	28163932	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	CDS	28163933	28164006	1	-	2	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	exon	28163933	28164006	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	intron	28164007	28164104	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	CDS	28164105	28164161	1	-	2	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	exon	28164105	28164161	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	intron	28164162	28164323	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	CDS	28164324	28164386	1	-	2	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	exon	28164324	28164386	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	intron	28164387	28164479	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	CDS	28164480	28164568	0.47	-	1	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	exon	28164480	28164568	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	intron	28164569	28164749	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	CDS	28164750	28164796	0.21	-	0	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	exon	28164750	28164796	.	-	.	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
Ledus.S1	AUGUSTUS	start_codon	28164794	28164796	.	-	0	transcript_id "Ledus.S1G340600.t1"; gene_id "Ledus.S1G340600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9791.t1 is derived from g10821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9838986	9842785	.	-	.	Ledus.S3G126800
Ledus.S3	AUGUSTUS	transcript	9838986	9842785	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	stop_codon	9838983	9838985	.	-	0	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9838986	9839182	0.31	-	2	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9838986	9839182	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9839183	9839326	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9839327	9839426	1	-	0	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9839327	9839426	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9839427	9839588	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9839589	9839891	0.97	-	0	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9839589	9839891	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9839892	9840005	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9840006	9840085	1	-	2	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9840006	9840085	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9840086	9840162	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9840163	9840311	1	-	1	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9840163	9840311	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9840312	9840419	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9840420	9840511	1	-	0	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9840420	9840511	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9840512	9840645	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9840646	9840707	1	-	2	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9840646	9840707	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9840708	9840798	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9840799	9840947	1	-	1	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9840799	9840947	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9840948	9841037	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9841038	9841113	1	-	2	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9841038	9841113	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9841114	9841286	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9841287	9841320	1	-	0	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9841287	9841320	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9841321	9841414	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9841415	9841456	1	-	0	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9841415	9841456	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9841457	9841584	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9841585	9841666	1	-	1	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9841585	9841666	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9841667	9841763	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9841764	9841789	1	-	0	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9841764	9841789	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9841790	9841924	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9841925	9842047	1	-	0	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9841925	9842047	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9842048	9842149	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9842150	9842179	1	-	0	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9842150	9842179	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9842180	9842270	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9842271	9842314	1	-	2	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9842271	9842314	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9842315	9842468	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9842469	9842571	1	-	0	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9842469	9842571	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	intron	9842572	9842674	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	CDS	9842675	9842785	1	-	0	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	exon	9842675	9842785	.	-	.	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
Ledus.S3	AUGUSTUS	start_codon	9842783	9842785	.	-	0	transcript_id "Ledus.S3G126800.t1"; gene_id "Ledus.S3G126800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2729.t1 is derived from g163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2573862	2577200	.	-	.	Ledus.S1G015000
Ledus.S1	AUGUSTUS	transcript	2573862	2577200	.	-	.	transcript_id "Ledus.S1G015000.t1"; gene_id "Ledus.S1G015000"
Ledus.S1	AUGUSTUS	stop_codon	2573859	2573861	.	-	0	transcript_id "Ledus.S1G015000.t1"; gene_id "Ledus.S1G015000"
Ledus.S1	AUGUSTUS	CDS	2573862	2576854	0.68	-	2	transcript_id "Ledus.S1G015000.t1"; gene_id "Ledus.S1G015000"
Ledus.S1	AUGUSTUS	exon	2573862	2576854	.	-	.	transcript_id "Ledus.S1G015000.t1"; gene_id "Ledus.S1G015000"
Ledus.S1	AUGUSTUS	intron	2576855	2576940	.	-	.	transcript_id "Ledus.S1G015000.t1"; gene_id "Ledus.S1G015000"
Ledus.S1	AUGUSTUS	CDS	2576941	2577065	0.55	-	1	transcript_id "Ledus.S1G015000.t1"; gene_id "Ledus.S1G015000"
Ledus.S1	AUGUSTUS	exon	2576941	2577065	.	-	.	transcript_id "Ledus.S1G015000.t1"; gene_id "Ledus.S1G015000"
Ledus.S1	AUGUSTUS	intron	2577066	2577174	.	-	.	transcript_id "Ledus.S1G015000.t1"; gene_id "Ledus.S1G015000"
Ledus.S1	AUGUSTUS	CDS	2577175	2577200	0.52	-	0	transcript_id "Ledus.S1G015000.t1"; gene_id "Ledus.S1G015000"
Ledus.S1	AUGUSTUS	exon	2577175	2577200	.	-	.	transcript_id "Ledus.S1G015000.t1"; gene_id "Ledus.S1G015000"
Ledus.S1	AUGUSTUS	start_codon	2577198	2577200	.	-	0	transcript_id "Ledus.S1G015000.t1"; gene_id "Ledus.S1G015000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11622.t1 is derived from g5240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5606425	5609106	.	-	.	Ledus.S4G077800
Ledus.S4	AUGUSTUS	transcript	5606425	5609106	.	-	.	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	stop_codon	5606422	5606424	.	-	0	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	CDS	5606425	5606724	0.54	-	0	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	exon	5606425	5606724	.	-	.	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	intron	5606725	5607048	.	-	.	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	CDS	5607049	5607246	0.41	-	0	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	exon	5607049	5607246	.	-	.	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	intron	5607247	5607472	.	-	.	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	CDS	5607473	5607706	0.61	-	0	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	exon	5607473	5607706	.	-	.	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	intron	5607707	5607790	.	-	.	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	CDS	5607791	5608994	0.52	-	1	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	exon	5607791	5608994	.	-	.	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	intron	5608995	5609095	.	-	.	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	CDS	5609096	5609106	0.89	-	0	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	exon	5609096	5609106	.	-	.	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
Ledus.S4	AUGUSTUS	start_codon	5609104	5609106	.	-	0	transcript_id "Ledus.S4G077800.t1"; gene_id "Ledus.S4G077800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1088.t1 is derived from g7949.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7457754	7458314	.	+	.	Ledus.S2G097000
Ledus.S2	AUGUSTUS	transcript	7457754	7458314	.	+	.	transcript_id "Ledus.S2G097000.t1"; gene_id "Ledus.S2G097000"
Ledus.S2	AUGUSTUS	start_codon	7457754	7457756	.	+	0	transcript_id "Ledus.S2G097000.t1"; gene_id "Ledus.S2G097000"
Ledus.S2	AUGUSTUS	CDS	7457754	7458314	0.82	+	0	transcript_id "Ledus.S2G097000.t1"; gene_id "Ledus.S2G097000"
Ledus.S2	AUGUSTUS	exon	7457754	7458314	.	+	.	transcript_id "Ledus.S2G097000.t1"; gene_id "Ledus.S2G097000"
Ledus.S2	AUGUSTUS	stop_codon	7458315	7458317	.	+	0	transcript_id "Ledus.S2G097000.t1"; gene_id "Ledus.S2G097000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1241.t1 is derived from g8102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8798328	8801354	.	-	.	Ledus.S2G112300
Ledus.S2	AUGUSTUS	transcript	8798328	8801354	.	-	.	transcript_id "Ledus.S2G112300.t1"; gene_id "Ledus.S2G112300"
Ledus.S2	AUGUSTUS	stop_codon	8798325	8798327	.	-	0	transcript_id "Ledus.S2G112300.t1"; gene_id "Ledus.S2G112300"
Ledus.S2	AUGUSTUS	CDS	8798328	8798522	0.99	-	0	transcript_id "Ledus.S2G112300.t1"; gene_id "Ledus.S2G112300"
Ledus.S2	AUGUSTUS	exon	8798328	8798522	.	-	.	transcript_id "Ledus.S2G112300.t1"; gene_id "Ledus.S2G112300"
Ledus.S2	AUGUSTUS	intron	8798523	8798871	.	-	.	transcript_id "Ledus.S2G112300.t1"; gene_id "Ledus.S2G112300"
Ledus.S2	AUGUSTUS	CDS	8798872	8798906	1	-	2	transcript_id "Ledus.S2G112300.t1"; gene_id "Ledus.S2G112300"
Ledus.S2	AUGUSTUS	exon	8798872	8798906	.	-	.	transcript_id "Ledus.S2G112300.t1"; gene_id "Ledus.S2G112300"
Ledus.S2	AUGUSTUS	intron	8798907	8800273	.	-	.	transcript_id "Ledus.S2G112300.t1"; gene_id "Ledus.S2G112300"
Ledus.S2	AUGUSTUS	CDS	8800274	8801354	0.97	-	0	transcript_id "Ledus.S2G112300.t1"; gene_id "Ledus.S2G112300"
Ledus.S2	AUGUSTUS	exon	8800274	8801354	.	-	.	transcript_id "Ledus.S2G112300.t1"; gene_id "Ledus.S2G112300"
Ledus.S2	AUGUSTUS	start_codon	8801352	8801354	.	-	0	transcript_id "Ledus.S2G112300.t1"; gene_id "Ledus.S2G112300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5990.t1 is derived from g3433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28184352	28184926	.	-	.	Ledus.S1G341100
Ledus.S1	AUGUSTUS	transcript	28184352	28184926	.	-	.	transcript_id "Ledus.S1G341100.t1"; gene_id "Ledus.S1G341100"
Ledus.S1	AUGUSTUS	stop_codon	28184349	28184351	.	-	0	transcript_id "Ledus.S1G341100.t1"; gene_id "Ledus.S1G341100"
Ledus.S1	AUGUSTUS	CDS	28184352	28184666	0.96	-	0	transcript_id "Ledus.S1G341100.t1"; gene_id "Ledus.S1G341100"
Ledus.S1	AUGUSTUS	exon	28184352	28184666	.	-	.	transcript_id "Ledus.S1G341100.t1"; gene_id "Ledus.S1G341100"
Ledus.S1	AUGUSTUS	intron	28184667	28184758	.	-	.	transcript_id "Ledus.S1G341100.t1"; gene_id "Ledus.S1G341100"
Ledus.S1	AUGUSTUS	CDS	28184759	28184926	0.54	-	0	transcript_id "Ledus.S1G341100.t1"; gene_id "Ledus.S1G341100"
Ledus.S1	AUGUSTUS	exon	28184759	28184926	.	-	.	transcript_id "Ledus.S1G341100.t1"; gene_id "Ledus.S1G341100"
Ledus.S1	AUGUSTUS	start_codon	28184924	28184926	.	-	0	transcript_id "Ledus.S1G341100.t1"; gene_id "Ledus.S1G341100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7863.t1 is derived from g12534.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7517196	7520973	.	+	.	Ledus.S5G064100
Ledus.S5	AUGUSTUS	transcript	7517196	7520973	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	start_codon	7517196	7517198	.	+	0	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	CDS	7517196	7517874	0.97	+	0	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	exon	7517196	7517874	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	intron	7517875	7518016	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	CDS	7518017	7518598	1	+	2	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	exon	7518017	7518598	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	intron	7518599	7518738	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	CDS	7518739	7518832	1	+	2	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	exon	7518739	7518832	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	intron	7518833	7518931	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	CDS	7518932	7519139	1	+	1	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	exon	7518932	7519139	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	intron	7519140	7519277	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	CDS	7519278	7519469	1	+	0	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	exon	7519278	7519469	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	intron	7519470	7519559	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	CDS	7519560	7519747	1	+	0	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	exon	7519560	7519747	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	intron	7519748	7519893	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	CDS	7519894	7520107	0.89	+	1	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	exon	7519894	7520107	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	intron	7520108	7520224	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	CDS	7520225	7520356	1	+	0	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	exon	7520225	7520356	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	intron	7520357	7520490	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	CDS	7520491	7520663	1	+	0	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	exon	7520491	7520663	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	intron	7520664	7520747	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	CDS	7520748	7520973	0.8	+	1	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	exon	7520748	7520973	.	+	.	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
Ledus.S5	AUGUSTUS	stop_codon	7520974	7520976	.	+	0	transcript_id "Ledus.S5G064100.t1"; gene_id "Ledus.S5G064100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5101.t1 is derived from g2540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21658464	21659847	.	+	.	Ledus.S1G252200
Ledus.S1	AUGUSTUS	transcript	21658464	21659847	.	+	.	transcript_id "Ledus.S1G252200.t1"; gene_id "Ledus.S1G252200"
Ledus.S1	AUGUSTUS	start_codon	21658464	21658466	.	+	0	transcript_id "Ledus.S1G252200.t1"; gene_id "Ledus.S1G252200"
Ledus.S1	AUGUSTUS	CDS	21658464	21658949	0.21	+	0	transcript_id "Ledus.S1G252200.t1"; gene_id "Ledus.S1G252200"
Ledus.S1	AUGUSTUS	exon	21658464	21658949	.	+	.	transcript_id "Ledus.S1G252200.t1"; gene_id "Ledus.S1G252200"
Ledus.S1	AUGUSTUS	intron	21658950	21659265	.	+	.	transcript_id "Ledus.S1G252200.t1"; gene_id "Ledus.S1G252200"
Ledus.S1	AUGUSTUS	CDS	21659266	21659847	0.31	+	0	transcript_id "Ledus.S1G252200.t1"; gene_id "Ledus.S1G252200"
Ledus.S1	AUGUSTUS	exon	21659266	21659847	.	+	.	transcript_id "Ledus.S1G252200.t1"; gene_id "Ledus.S1G252200"
Ledus.S1	AUGUSTUS	stop_codon	21659848	21659850	.	+	0	transcript_id "Ledus.S1G252200.t1"; gene_id "Ledus.S1G252200"
# This transcript jg2066.t2 is derived from g8929.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2067.t1 is derived from g8930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14431122	14433785	.	+	.	Ledus.S2G194900
Ledus.S2	AUGUSTUS	transcript	14431122	14433785	.	+	.	transcript_id "Ledus.S2G194900.t1"; gene_id "Ledus.S2G194900"
Ledus.S2	AUGUSTUS	start_codon	14431122	14431124	.	+	0	transcript_id "Ledus.S2G194900.t1"; gene_id "Ledus.S2G194900"
Ledus.S2	AUGUSTUS	CDS	14431122	14433785	0.95	+	0	transcript_id "Ledus.S2G194900.t1"; gene_id "Ledus.S2G194900"
Ledus.S2	AUGUSTUS	exon	14431122	14433785	.	+	.	transcript_id "Ledus.S2G194900.t1"; gene_id "Ledus.S2G194900"
Ledus.S2	AUGUSTUS	stop_codon	14433786	14433788	.	+	0	transcript_id "Ledus.S2G194900.t1"; gene_id "Ledus.S2G194900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2552.t1 is derived from g9415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18895776	18899744	.	-	.	Ledus.S2G243400
Ledus.S2	AUGUSTUS	transcript	18895776	18899744	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	stop_codon	18895773	18895775	.	-	0	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	CDS	18895776	18895994	0.98	-	0	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	exon	18895776	18895994	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	intron	18895995	18896085	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	CDS	18896086	18896375	0.98	-	2	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	exon	18896086	18896375	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	intron	18896376	18896584	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	CDS	18896585	18896819	1	-	0	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	exon	18896585	18896819	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	intron	18896820	18896989	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	CDS	18896990	18897093	0.89	-	2	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	exon	18896990	18897093	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	intron	18897094	18897189	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	CDS	18897190	18897262	0.91	-	0	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	exon	18897190	18897262	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	intron	18897263	18897449	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	CDS	18897450	18897500	1	-	0	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	exon	18897450	18897500	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	intron	18897501	18897652	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	CDS	18897653	18897788	1	-	1	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	exon	18897653	18897788	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	intron	18897789	18898214	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	CDS	18898215	18898315	1	-	0	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	exon	18898215	18898315	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	intron	18898316	18898569	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	CDS	18898570	18898743	0.77	-	0	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	exon	18898570	18898743	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	intron	18898744	18898849	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	CDS	18898850	18898947	1	-	2	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	exon	18898850	18898947	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	intron	18898948	18899128	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	CDS	18899129	18899744	0.94	-	0	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	exon	18899129	18899744	.	-	.	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
Ledus.S2	AUGUSTUS	start_codon	18899742	18899744	.	-	0	transcript_id "Ledus.S2G243400.t1"; gene_id "Ledus.S2G243400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1332.t1 is derived from g8193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9301650	9304713	.	-	.	Ledus.S2G121400
Ledus.S2	AUGUSTUS	transcript	9301650	9304713	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	stop_codon	9301647	9301649	.	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9301650	9301666	1	-	2	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9301650	9301666	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9301667	9301745	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9301746	9301806	1	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9301746	9301806	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9301807	9301872	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9301873	9302001	0.96	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9301873	9302001	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9302002	9302102	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9302103	9302150	0.97	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9302103	9302150	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9302151	9302258	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9302259	9302385	1	-	1	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9302259	9302385	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9302386	9302521	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9302522	9302646	1	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9302522	9302646	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9302647	9302926	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9302927	9302989	0.84	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9302927	9302989	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9302990	9303153	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9303154	9303412	0.48	-	1	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9303154	9303412	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9303413	9303549	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9303550	9303629	0.98	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9303550	9303629	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9303630	9303753	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9303754	9303849	0.97	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9303754	9303849	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9303850	9304009	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9304010	9304054	1	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9304010	9304054	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9304055	9304141	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9304142	9304207	1	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9304142	9304207	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9304208	9304293	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9304294	9304383	1	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9304294	9304383	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9304384	9304481	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9304482	9304552	1	-	2	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9304482	9304552	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9304553	9304628	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9304629	9304713	0.78	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9304629	9304713	.	-	.	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	start_codon	9304711	9304713	.	-	0	transcript_id "Ledus.S2G121400.t1"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	transcript	9301650	9304648	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	stop_codon	9301647	9301649	.	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9301650	9301666	1	-	2	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9301650	9301666	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9301667	9301745	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9301746	9301806	1	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9301746	9301806	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9301807	9301872	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9301873	9302001	0.99	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9301873	9302001	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9302002	9302102	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9302103	9302150	0.98	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9302103	9302150	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9302151	9302258	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9302259	9302385	1	-	1	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9302259	9302385	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9302386	9302521	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9302522	9302646	1	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9302522	9302646	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9302647	9302926	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9302927	9302989	0.85	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9302927	9302989	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9302990	9303153	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9303154	9303412	0.49	-	1	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9303154	9303412	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9303413	9303549	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9303550	9303629	0.98	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9303550	9303629	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9303630	9303753	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9303754	9303849	0.95	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9303754	9303849	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9303850	9304009	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9304010	9304054	1	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9304010	9304054	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9304055	9304141	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9304142	9304207	1	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9304142	9304207	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9304208	9304293	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9304294	9304383	1	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9304294	9304383	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9304384	9304481	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9304482	9304552	0.88	-	2	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9304482	9304552	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	intron	9304553	9304632	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	CDS	9304633	9304648	0.78	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	exon	9304633	9304648	.	-	.	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
Ledus.S2	AUGUSTUS	start_codon	9304646	9304648	.	-	0	transcript_id "Ledus.S2G121400.t2"; gene_id "Ledus.S2G121400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4722.t1 is derived from g2160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19255258	19255648	.	+	.	Ledus.S1G214300
Ledus.S1	AUGUSTUS	transcript	19255258	19255648	.	+	.	transcript_id "Ledus.S1G214300.t1"; gene_id "Ledus.S1G214300"
Ledus.S1	AUGUSTUS	start_codon	19255258	19255260	.	+	0	transcript_id "Ledus.S1G214300.t1"; gene_id "Ledus.S1G214300"
Ledus.S1	AUGUSTUS	CDS	19255258	19255419	0.89	+	0	transcript_id "Ledus.S1G214300.t1"; gene_id "Ledus.S1G214300"
Ledus.S1	AUGUSTUS	exon	19255258	19255419	.	+	.	transcript_id "Ledus.S1G214300.t1"; gene_id "Ledus.S1G214300"
Ledus.S1	AUGUSTUS	intron	19255420	19255501	.	+	.	transcript_id "Ledus.S1G214300.t1"; gene_id "Ledus.S1G214300"
Ledus.S1	AUGUSTUS	CDS	19255502	19255648	1	+	0	transcript_id "Ledus.S1G214300.t1"; gene_id "Ledus.S1G214300"
Ledus.S1	AUGUSTUS	exon	19255502	19255648	.	+	.	transcript_id "Ledus.S1G214300.t1"; gene_id "Ledus.S1G214300"
Ledus.S1	AUGUSTUS	stop_codon	19255649	19255651	.	+	0	transcript_id "Ledus.S1G214300.t1"; gene_id "Ledus.S1G214300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2995.t1 is derived from g430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5195162	5196379	.	-	.	Ledus.S1G041600
Ledus.S1	AUGUSTUS	transcript	5195162	5196379	.	-	.	transcript_id "Ledus.S1G041600.t1"; gene_id "Ledus.S1G041600"
Ledus.S1	AUGUSTUS	stop_codon	5195159	5195161	.	-	0	transcript_id "Ledus.S1G041600.t1"; gene_id "Ledus.S1G041600"
Ledus.S1	AUGUSTUS	CDS	5195162	5196085	0.87	-	0	transcript_id "Ledus.S1G041600.t1"; gene_id "Ledus.S1G041600"
Ledus.S1	AUGUSTUS	exon	5195162	5196085	.	-	.	transcript_id "Ledus.S1G041600.t1"; gene_id "Ledus.S1G041600"
Ledus.S1	AUGUSTUS	intron	5196086	5196352	.	-	.	transcript_id "Ledus.S1G041600.t1"; gene_id "Ledus.S1G041600"
Ledus.S1	AUGUSTUS	CDS	5196353	5196379	0.84	-	0	transcript_id "Ledus.S1G041600.t1"; gene_id "Ledus.S1G041600"
Ledus.S1	AUGUSTUS	exon	5196353	5196379	.	-	.	transcript_id "Ledus.S1G041600.t1"; gene_id "Ledus.S1G041600"
Ledus.S1	AUGUSTUS	start_codon	5196377	5196379	.	-	0	transcript_id "Ledus.S1G041600.t1"; gene_id "Ledus.S1G041600"
# This transcript jg800.t2 is derived from g7661.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg801.t1 is derived from g7662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5210499	5212686	.	-	.	Ledus.S2G068300
Ledus.S2	AUGUSTUS	transcript	5210499	5212686	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	stop_codon	5210496	5210498	.	-	0	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	CDS	5210499	5210573	0.83	-	0	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	exon	5210499	5210573	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	intron	5210574	5210696	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	CDS	5210697	5210868	0.84	-	1	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	exon	5210697	5210868	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	intron	5210869	5210950	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	CDS	5210951	5211066	1	-	0	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	exon	5210951	5211066	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	intron	5211067	5211163	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	CDS	5211164	5211229	1	-	0	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	exon	5211164	5211229	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	intron	5211230	5211306	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	CDS	5211307	5211408	1	-	0	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	exon	5211307	5211408	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	intron	5211409	5211479	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	CDS	5211480	5211532	1	-	2	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	exon	5211480	5211532	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	intron	5211533	5211630	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	CDS	5211631	5211688	1	-	0	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	exon	5211631	5211688	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	intron	5211689	5211785	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	CDS	5211786	5211884	1	-	0	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	exon	5211786	5211884	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	intron	5211885	5211981	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	CDS	5211982	5212025	0.97	-	2	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	exon	5211982	5212025	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	intron	5212026	5212131	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	CDS	5212132	5212222	0.88	-	0	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	exon	5212132	5212222	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	intron	5212223	5212307	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	CDS	5212308	5212334	1	-	0	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	exon	5212308	5212334	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	intron	5212335	5212404	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	CDS	5212405	5212686	0.49	-	0	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	exon	5212405	5212686	.	-	.	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
Ledus.S2	AUGUSTUS	start_codon	5212684	5212686	.	-	0	transcript_id "Ledus.S2G068300.t1"; gene_id "Ledus.S2G068300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13132.t1 is derived from g6942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6689540	6689875	.	+	.	Ledus.S6G019400
Ledus.S6	AUGUSTUS	transcript	6689540	6689875	.	+	.	transcript_id "Ledus.S6G019400.t1"; gene_id "Ledus.S6G019400"
Ledus.S6	AUGUSTUS	start_codon	6689540	6689542	.	+	0	transcript_id "Ledus.S6G019400.t1"; gene_id "Ledus.S6G019400"
Ledus.S6	AUGUSTUS	CDS	6689540	6689875	0.93	+	0	transcript_id "Ledus.S6G019400.t1"; gene_id "Ledus.S6G019400"
Ledus.S6	AUGUSTUS	exon	6689540	6689875	.	+	.	transcript_id "Ledus.S6G019400.t1"; gene_id "Ledus.S6G019400"
Ledus.S6	AUGUSTUS	stop_codon	6689876	6689878	.	+	0	transcript_id "Ledus.S6G019400.t1"; gene_id "Ledus.S6G019400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5341.t1 is derived from g2780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23474537	23477379	.	+	.	Ledus.S1G276200
Ledus.S1	AUGUSTUS	transcript	23474537	23477379	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	start_codon	23474537	23474539	.	+	0	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	CDS	23474537	23474725	0.69	+	0	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	exon	23474537	23474725	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	intron	23474726	23475057	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	CDS	23475058	23475406	0.94	+	0	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	exon	23475058	23475406	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	intron	23475407	23475677	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	CDS	23475678	23475864	0.92	+	2	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	exon	23475678	23475864	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	intron	23475865	23476044	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	CDS	23476045	23476089	1	+	1	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	exon	23476045	23476089	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	intron	23476090	23476227	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	CDS	23476228	23476387	1	+	1	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	exon	23476228	23476387	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	intron	23476388	23476583	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	CDS	23476584	23476951	0.89	+	0	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	exon	23476584	23476951	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	intron	23476952	23477057	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	CDS	23477058	23477122	0.52	+	1	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	exon	23477058	23477122	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	intron	23477123	23477203	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	CDS	23477204	23477379	0.36	+	2	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	exon	23477204	23477379	.	+	.	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
Ledus.S1	AUGUSTUS	stop_codon	23477380	23477382	.	+	0	transcript_id "Ledus.S1G276200.t1"; gene_id "Ledus.S1G276200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8677.t1 is derived from g9707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1325976	1326833	.	+	.	Ledus.S3G015400
Ledus.S3	AUGUSTUS	transcript	1325976	1326833	.	+	.	transcript_id "Ledus.S3G015400.t1"; gene_id "Ledus.S3G015400"
Ledus.S3	AUGUSTUS	start_codon	1325976	1325978	.	+	0	transcript_id "Ledus.S3G015400.t1"; gene_id "Ledus.S3G015400"
Ledus.S3	AUGUSTUS	CDS	1325976	1326833	0.72	+	0	transcript_id "Ledus.S3G015400.t1"; gene_id "Ledus.S3G015400"
Ledus.S3	AUGUSTUS	exon	1325976	1326833	.	+	.	transcript_id "Ledus.S3G015400.t1"; gene_id "Ledus.S3G015400"
Ledus.S3	AUGUSTUS	stop_codon	1326834	1326836	.	+	0	transcript_id "Ledus.S3G015400.t1"; gene_id "Ledus.S3G015400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12596.t1 is derived from g6218.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13035075	13036224	.	-	.	Ledus.S4G175200
Ledus.S4	AUGUSTUS	transcript	13035075	13036224	.	-	.	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	stop_codon	13035072	13035074	.	-	0	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	CDS	13035075	13035233	0.81	-	0	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	exon	13035075	13035233	.	-	.	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	intron	13035234	13035345	.	-	.	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	CDS	13035346	13035492	0.83	-	0	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	exon	13035346	13035492	.	-	.	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	intron	13035493	13035619	.	-	.	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	CDS	13035620	13035740	1	-	1	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	exon	13035620	13035740	.	-	.	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	intron	13035741	13035925	.	-	.	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	CDS	13035926	13036224	0.93	-	0	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	exon	13035926	13036224	.	-	.	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
Ledus.S4	AUGUSTUS	start_codon	13036222	13036224	.	-	0	transcript_id "Ledus.S4G175200.t1"; gene_id "Ledus.S4G175200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8844.t1 is derived from g9874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2242660	2243499	.	-	.	Ledus.S3G032100
Ledus.S3	AUGUSTUS	transcript	2242660	2243499	.	-	.	transcript_id "Ledus.S3G032100.t1"; gene_id "Ledus.S3G032100"
Ledus.S3	AUGUSTUS	stop_codon	2242657	2242659	.	-	0	transcript_id "Ledus.S3G032100.t1"; gene_id "Ledus.S3G032100"
Ledus.S3	AUGUSTUS	CDS	2242660	2243499	0.81	-	0	transcript_id "Ledus.S3G032100.t1"; gene_id "Ledus.S3G032100"
Ledus.S3	AUGUSTUS	exon	2242660	2243499	.	-	.	transcript_id "Ledus.S3G032100.t1"; gene_id "Ledus.S3G032100"
Ledus.S3	AUGUSTUS	start_codon	2243497	2243499	.	-	0	transcript_id "Ledus.S3G032100.t1"; gene_id "Ledus.S3G032100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg1054.t1 is derived from g7916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7026445	7028344	.	+	.	Ledus.S2G093700
Ledus.S2	AUGUSTUS	transcript	7026445	7028344	.	+	.	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	start_codon	7026445	7026447	.	+	0	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	CDS	7026445	7026921	0.63	+	0	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	exon	7026445	7026921	.	+	.	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	intron	7026922	7027004	.	+	.	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	CDS	7027005	7027802	0.69	+	0	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	exon	7027005	7027802	.	+	.	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	intron	7027803	7027941	.	+	.	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	CDS	7027942	7028025	0.96	+	0	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	exon	7027942	7028025	.	+	.	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	intron	7028026	7028200	.	+	.	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	CDS	7028201	7028344	1	+	0	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	exon	7028201	7028344	.	+	.	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	stop_codon	7028345	7028347	.	+	0	transcript_id "Ledus.S2G093700.t1"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	transcript	7026445	7027389	.	+	.	transcript_id "Ledus.S2G093700.t2"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	start_codon	7026445	7026447	.	+	0	transcript_id "Ledus.S2G093700.t2"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	CDS	7026445	7026921	0.73	+	0	transcript_id "Ledus.S2G093700.t2"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	exon	7026445	7026921	.	+	.	transcript_id "Ledus.S2G093700.t2"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	intron	7026922	7027004	.	+	.	transcript_id "Ledus.S2G093700.t2"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	CDS	7027005	7027119	0.68	+	0	transcript_id "Ledus.S2G093700.t2"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	exon	7027005	7027119	.	+	.	transcript_id "Ledus.S2G093700.t2"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	intron	7027120	7027282	.	+	.	transcript_id "Ledus.S2G093700.t2"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	CDS	7027283	7027389	0.69	+	2	transcript_id "Ledus.S2G093700.t2"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	exon	7027283	7027389	.	+	.	transcript_id "Ledus.S2G093700.t2"; gene_id "Ledus.S2G093700"
Ledus.S2	AUGUSTUS	stop_codon	7027390	7027392	.	+	0	transcript_id "Ledus.S2G093700.t2"; gene_id "Ledus.S2G093700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1452.t1 is derived from g8313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10276984	10277391	.	-	.	Ledus.S2G133400
Ledus.S2	AUGUSTUS	transcript	10276984	10277391	.	-	.	transcript_id "Ledus.S2G133400.t1"; gene_id "Ledus.S2G133400"
Ledus.S2	AUGUSTUS	stop_codon	10276981	10276983	.	-	0	transcript_id "Ledus.S2G133400.t1"; gene_id "Ledus.S2G133400"
Ledus.S2	AUGUSTUS	CDS	10276984	10277074	0.46	-	1	transcript_id "Ledus.S2G133400.t1"; gene_id "Ledus.S2G133400"
Ledus.S2	AUGUSTUS	exon	10276984	10277074	.	-	.	transcript_id "Ledus.S2G133400.t1"; gene_id "Ledus.S2G133400"
Ledus.S2	AUGUSTUS	intron	10277075	10277281	.	-	.	transcript_id "Ledus.S2G133400.t1"; gene_id "Ledus.S2G133400"
Ledus.S2	AUGUSTUS	CDS	10277282	10277391	0.43	-	0	transcript_id "Ledus.S2G133400.t1"; gene_id "Ledus.S2G133400"
Ledus.S2	AUGUSTUS	exon	10277282	10277391	.	-	.	transcript_id "Ledus.S2G133400.t1"; gene_id "Ledus.S2G133400"
Ledus.S2	AUGUSTUS	start_codon	10277389	10277391	.	-	0	transcript_id "Ledus.S2G133400.t1"; gene_id "Ledus.S2G133400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1942.t1 is derived from g8805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13617070	13618187	.	-	.	Ledus.S2G182400
Ledus.S2	AUGUSTUS	transcript	13617070	13618187	.	-	.	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	stop_codon	13617067	13617069	.	-	0	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	CDS	13617070	13617150	1	-	0	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	exon	13617070	13617150	.	-	.	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	intron	13617151	13617227	.	-	.	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	CDS	13617228	13617410	1	-	0	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	exon	13617228	13617410	.	-	.	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	intron	13617411	13617490	.	-	.	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	CDS	13617491	13617612	1	-	2	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	exon	13617491	13617612	.	-	.	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	intron	13617613	13617713	.	-	.	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	CDS	13617714	13617816	1	-	0	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	exon	13617714	13617816	.	-	.	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	intron	13617817	13617897	.	-	.	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	CDS	13617898	13617974	1	-	2	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	exon	13617898	13617974	.	-	.	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	intron	13617975	13618075	.	-	.	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	CDS	13618076	13618187	1	-	0	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	exon	13618076	13618187	.	-	.	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
Ledus.S2	AUGUSTUS	start_codon	13618185	13618187	.	-	0	transcript_id "Ledus.S2G182400.t1"; gene_id "Ledus.S2G182400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10460.t1 is derived from g11490.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15372668	15373944	.	-	.	Ledus.S3G193700
Ledus.S3	AUGUSTUS	transcript	15372668	15373944	.	-	.	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	stop_codon	15372665	15372667	.	-	0	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	CDS	15372668	15372912	1	-	2	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	exon	15372668	15372912	.	-	.	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	intron	15372913	15373069	.	-	.	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	CDS	15373070	15373162	1	-	2	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	exon	15373070	15373162	.	-	.	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	intron	15373163	15373234	.	-	.	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	CDS	15373235	15373330	0.97	-	2	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	exon	15373235	15373330	.	-	.	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	intron	15373331	15373637	.	-	.	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	CDS	15373638	15373944	0.29	-	0	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	exon	15373638	15373944	.	-	.	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	start_codon	15373942	15373944	.	-	0	transcript_id "Ledus.S3G193700.t1"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	transcript	15372668	15373350	.	-	.	transcript_id "Ledus.S3G193700.t2"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	stop_codon	15372665	15372667	.	-	0	transcript_id "Ledus.S3G193700.t2"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	CDS	15372668	15372912	0.99	-	2	transcript_id "Ledus.S3G193700.t2"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	exon	15372668	15372912	.	-	.	transcript_id "Ledus.S3G193700.t2"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	intron	15372913	15373069	.	-	.	transcript_id "Ledus.S3G193700.t2"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	CDS	15373070	15373162	0.96	-	2	transcript_id "Ledus.S3G193700.t2"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	exon	15373070	15373162	.	-	.	transcript_id "Ledus.S3G193700.t2"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	intron	15373163	15373295	.	-	.	transcript_id "Ledus.S3G193700.t2"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	CDS	15373296	15373350	0.59	-	0	transcript_id "Ledus.S3G193700.t2"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	exon	15373296	15373350	.	-	.	transcript_id "Ledus.S3G193700.t2"; gene_id "Ledus.S3G193700"
Ledus.S3	AUGUSTUS	start_codon	15373348	15373350	.	-	0	transcript_id "Ledus.S3G193700.t2"; gene_id "Ledus.S3G193700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8758.t1 is derived from g9788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1861231	1862654	.	-	.	Ledus.S3G023500
Ledus.S3	AUGUSTUS	transcript	1861231	1862654	.	-	.	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	stop_codon	1861228	1861230	.	-	0	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	CDS	1861231	1861377	0.67	-	0	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	exon	1861231	1861377	.	-	.	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	intron	1861378	1861459	.	-	.	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	CDS	1861460	1861576	0.98	-	0	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	exon	1861460	1861576	.	-	.	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	intron	1861577	1861687	.	-	.	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	CDS	1861688	1861862	0.99	-	1	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	exon	1861688	1861862	.	-	.	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	intron	1861863	1861960	.	-	.	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	CDS	1861961	1862224	0.63	-	1	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	exon	1861961	1862224	.	-	.	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	intron	1862225	1862319	.	-	.	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	CDS	1862320	1862394	0.7	-	1	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	exon	1862320	1862394	.	-	.	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	intron	1862395	1862481	.	-	.	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	CDS	1862482	1862654	1	-	0	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	exon	1862482	1862654	.	-	.	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
Ledus.S3	AUGUSTUS	start_codon	1862652	1862654	.	-	0	transcript_id "Ledus.S3G023500.t1"; gene_id "Ledus.S3G023500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4609.t1 is derived from g2046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18137131	18138273	.	-	.	Ledus.S1G203000
Ledus.S1	AUGUSTUS	transcript	18137131	18138273	.	-	.	transcript_id "Ledus.S1G203000.t1"; gene_id "Ledus.S1G203000"
Ledus.S1	AUGUSTUS	stop_codon	18137128	18137130	.	-	0	transcript_id "Ledus.S1G203000.t1"; gene_id "Ledus.S1G203000"
Ledus.S1	AUGUSTUS	CDS	18137131	18138273	1	-	0	transcript_id "Ledus.S1G203000.t1"; gene_id "Ledus.S1G203000"
Ledus.S1	AUGUSTUS	exon	18137131	18138273	.	-	.	transcript_id "Ledus.S1G203000.t1"; gene_id "Ledus.S1G203000"
Ledus.S1	AUGUSTUS	start_codon	18138271	18138273	.	-	0	transcript_id "Ledus.S1G203000.t1"; gene_id "Ledus.S1G203000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1459.t1 is derived from g8320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10303153	10304867	.	-	.	Ledus.S2G134100
Ledus.S2	AUGUSTUS	transcript	10303153	10304867	.	-	.	transcript_id "Ledus.S2G134100.t1"; gene_id "Ledus.S2G134100"
Ledus.S2	AUGUSTUS	stop_codon	10303150	10303152	.	-	0	transcript_id "Ledus.S2G134100.t1"; gene_id "Ledus.S2G134100"
Ledus.S2	AUGUSTUS	CDS	10303153	10303952	0.99	-	2	transcript_id "Ledus.S2G134100.t1"; gene_id "Ledus.S2G134100"
Ledus.S2	AUGUSTUS	exon	10303153	10303952	.	-	.	transcript_id "Ledus.S2G134100.t1"; gene_id "Ledus.S2G134100"
Ledus.S2	AUGUSTUS	intron	10303953	10304425	.	-	.	transcript_id "Ledus.S2G134100.t1"; gene_id "Ledus.S2G134100"
Ledus.S2	AUGUSTUS	CDS	10304426	10304867	0.86	-	0	transcript_id "Ledus.S2G134100.t1"; gene_id "Ledus.S2G134100"
Ledus.S2	AUGUSTUS	exon	10304426	10304867	.	-	.	transcript_id "Ledus.S2G134100.t1"; gene_id "Ledus.S2G134100"
Ledus.S2	AUGUSTUS	start_codon	10304865	10304867	.	-	0	transcript_id "Ledus.S2G134100.t1"; gene_id "Ledus.S2G134100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7599.t1 is derived from g12270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4293584	4294526	.	+	.	Ledus.S5G037700
Ledus.S5	AUGUSTUS	transcript	4293584	4294526	.	+	.	transcript_id "Ledus.S5G037700.t1"; gene_id "Ledus.S5G037700"
Ledus.S5	AUGUSTUS	start_codon	4293584	4293586	.	+	0	transcript_id "Ledus.S5G037700.t1"; gene_id "Ledus.S5G037700"
Ledus.S5	AUGUSTUS	CDS	4293584	4293740	0.83	+	0	transcript_id "Ledus.S5G037700.t1"; gene_id "Ledus.S5G037700"
Ledus.S5	AUGUSTUS	exon	4293584	4293740	.	+	.	transcript_id "Ledus.S5G037700.t1"; gene_id "Ledus.S5G037700"
Ledus.S5	AUGUSTUS	intron	4293741	4293903	.	+	.	transcript_id "Ledus.S5G037700.t1"; gene_id "Ledus.S5G037700"
Ledus.S5	AUGUSTUS	CDS	4293904	4293911	0.99	+	2	transcript_id "Ledus.S5G037700.t1"; gene_id "Ledus.S5G037700"
Ledus.S5	AUGUSTUS	exon	4293904	4293911	.	+	.	transcript_id "Ledus.S5G037700.t1"; gene_id "Ledus.S5G037700"
Ledus.S5	AUGUSTUS	intron	4293912	4294001	.	+	.	transcript_id "Ledus.S5G037700.t1"; gene_id "Ledus.S5G037700"
Ledus.S5	AUGUSTUS	CDS	4294002	4294526	0.82	+	0	transcript_id "Ledus.S5G037700.t1"; gene_id "Ledus.S5G037700"
Ledus.S5	AUGUSTUS	exon	4294002	4294526	.	+	.	transcript_id "Ledus.S5G037700.t1"; gene_id "Ledus.S5G037700"
Ledus.S5	AUGUSTUS	stop_codon	4294527	4294529	.	+	0	transcript_id "Ledus.S5G037700.t1"; gene_id "Ledus.S5G037700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1229.t1 is derived from g8090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8748766	8751234	.	+	.	Ledus.S2G111100
Ledus.S2	AUGUSTUS	transcript	8748766	8751234	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	start_codon	8748766	8748768	.	+	0	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	CDS	8748766	8748826	0.95	+	0	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	exon	8748766	8748826	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	intron	8748827	8748906	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	CDS	8748907	8749115	1	+	2	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	exon	8748907	8749115	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	intron	8749116	8749200	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	CDS	8749201	8749350	1	+	0	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	exon	8749201	8749350	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	intron	8749351	8749441	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	CDS	8749442	8749528	1	+	0	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	exon	8749442	8749528	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	intron	8749529	8749723	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	CDS	8749724	8749777	1	+	0	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	exon	8749724	8749777	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	intron	8749778	8749886	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	CDS	8749887	8749977	1	+	0	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	exon	8749887	8749977	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	intron	8749978	8750109	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	CDS	8750110	8750180	1	+	2	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	exon	8750110	8750180	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	intron	8750181	8750313	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	CDS	8750314	8750383	1	+	0	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	exon	8750314	8750383	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	intron	8750384	8750598	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	CDS	8750599	8750642	0.67	+	2	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	exon	8750599	8750642	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	intron	8750643	8750765	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	CDS	8750766	8750859	1	+	0	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	exon	8750766	8750859	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	intron	8750860	8750938	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	CDS	8750939	8751036	1	+	2	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	exon	8750939	8751036	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	intron	8751037	8751126	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	CDS	8751127	8751234	0.94	+	0	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	exon	8751127	8751234	.	+	.	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
Ledus.S2	AUGUSTUS	stop_codon	8751235	8751237	.	+	0	transcript_id "Ledus.S2G111100.t1"; gene_id "Ledus.S2G111100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9830.t1 is derived from g10860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10319319	10321727	.	+	.	Ledus.S3G130700
Ledus.S3	AUGUSTUS	transcript	10319319	10321727	.	+	.	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	start_codon	10319319	10319321	.	+	0	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	CDS	10319319	10320052	0.78	+	0	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	exon	10319319	10320052	.	+	.	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	intron	10320053	10320228	.	+	.	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	CDS	10320229	10320439	1	+	1	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	exon	10320229	10320439	.	+	.	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	intron	10320440	10320530	.	+	.	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	CDS	10320531	10320641	1	+	0	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	exon	10320531	10320641	.	+	.	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	intron	10320642	10320914	.	+	.	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	CDS	10320915	10321727	0.99	+	0	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	exon	10320915	10321727	.	+	.	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
Ledus.S3	AUGUSTUS	stop_codon	10321728	10321730	.	+	0	transcript_id "Ledus.S3G130700.t1"; gene_id "Ledus.S3G130700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7223.t1 is derived from g11894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	111849	114051	.	-	.	Ledus.S5G000100
Ledus.S5	AUGUSTUS	transcript	111849	114051	.	-	.	transcript_id "Ledus.S5G000100.t1"; gene_id "Ledus.S5G000100"
Ledus.S5	AUGUSTUS	stop_codon	111846	111848	.	-	0	transcript_id "Ledus.S5G000100.t1"; gene_id "Ledus.S5G000100"
Ledus.S5	AUGUSTUS	CDS	111849	111867	0.99	-	1	transcript_id "Ledus.S5G000100.t1"; gene_id "Ledus.S5G000100"
Ledus.S5	AUGUSTUS	exon	111849	111867	.	-	.	transcript_id "Ledus.S5G000100.t1"; gene_id "Ledus.S5G000100"
Ledus.S5	AUGUSTUS	intron	111868	111953	.	-	.	transcript_id "Ledus.S5G000100.t1"; gene_id "Ledus.S5G000100"
Ledus.S5	AUGUSTUS	CDS	111954	111994	0.99	-	0	transcript_id "Ledus.S5G000100.t1"; gene_id "Ledus.S5G000100"
Ledus.S5	AUGUSTUS	exon	111954	111994	.	-	.	transcript_id "Ledus.S5G000100.t1"; gene_id "Ledus.S5G000100"
Ledus.S5	AUGUSTUS	intron	111995	112215	.	-	.	transcript_id "Ledus.S5G000100.t1"; gene_id "Ledus.S5G000100"
Ledus.S5	AUGUSTUS	CDS	112216	114051	0.54	-	0	transcript_id "Ledus.S5G000100.t1"; gene_id "Ledus.S5G000100"
Ledus.S5	AUGUSTUS	exon	112216	114051	.	-	.	transcript_id "Ledus.S5G000100.t1"; gene_id "Ledus.S5G000100"
Ledus.S5	AUGUSTUS	start_codon	114049	114051	.	-	0	transcript_id "Ledus.S5G000100.t1"; gene_id "Ledus.S5G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9868.t1 is derived from g10898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10697407	10711013	.	+	.	Ledus.S3G134500
Ledus.S3	AUGUSTUS	transcript	10697407	10711013	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	start_codon	10697407	10697409	.	+	0	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10697407	10697525	0.41	+	0	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10697407	10697525	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10697526	10698068	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10698069	10698309	0.29	+	1	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10698069	10698309	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10698310	10698458	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10698459	10706678	0.75	+	0	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10698459	10706678	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10706679	10706763	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10706764	10707087	1	+	0	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10706764	10707087	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10707088	10707199	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10707200	10707410	0.94	+	0	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10707200	10707410	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10707411	10707517	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10707518	10707813	1	+	2	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10707518	10707813	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10707814	10707910	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10707911	10708245	1	+	0	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10707911	10708245	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10708246	10708379	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10708380	10709523	0.99	+	1	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10708380	10709523	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10709524	10709655	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10709656	10709802	1	+	0	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10709656	10709802	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10709803	10709893	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10709894	10709974	1	+	0	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10709894	10709974	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10709975	10710110	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10710111	10710336	0.96	+	0	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10710111	10710336	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10710337	10710499	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10710500	10710639	1	+	2	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10710500	10710639	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10710640	10710723	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10710724	10710830	1	+	0	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10710724	10710830	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	intron	10710831	10710913	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	CDS	10710914	10711013	0.88	+	1	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	exon	10710914	10711013	.	+	.	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
Ledus.S3	AUGUSTUS	stop_codon	10711014	10711016	.	+	0	transcript_id "Ledus.S3G134500.t1"; gene_id "Ledus.S3G134500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11477.t1 is derived from g5095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4666121	4666570	.	+	.	Ledus.S4G063300
Ledus.S4	AUGUSTUS	transcript	4666121	4666570	.	+	.	transcript_id "Ledus.S4G063300.t1"; gene_id "Ledus.S4G063300"
Ledus.S4	AUGUSTUS	start_codon	4666121	4666123	.	+	0	transcript_id "Ledus.S4G063300.t1"; gene_id "Ledus.S4G063300"
Ledus.S4	AUGUSTUS	CDS	4666121	4666188	0.44	+	0	transcript_id "Ledus.S4G063300.t1"; gene_id "Ledus.S4G063300"
Ledus.S4	AUGUSTUS	exon	4666121	4666188	.	+	.	transcript_id "Ledus.S4G063300.t1"; gene_id "Ledus.S4G063300"
Ledus.S4	AUGUSTUS	intron	4666189	4666287	.	+	.	transcript_id "Ledus.S4G063300.t1"; gene_id "Ledus.S4G063300"
Ledus.S4	AUGUSTUS	CDS	4666288	4666570	1	+	1	transcript_id "Ledus.S4G063300.t1"; gene_id "Ledus.S4G063300"
Ledus.S4	AUGUSTUS	exon	4666288	4666570	.	+	.	transcript_id "Ledus.S4G063300.t1"; gene_id "Ledus.S4G063300"
Ledus.S4	AUGUSTUS	stop_codon	4666571	4666573	.	+	0	transcript_id "Ledus.S4G063300.t1"; gene_id "Ledus.S4G063300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3350.t1 is derived from g785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7752619	7759879	.	+	.	Ledus.S1G077100
Ledus.S1	AUGUSTUS	transcript	7752633	7759879	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	start_codon	7752633	7752635	.	+	0	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7752633	7752644	0.92	+	0	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7752633	7752644	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7752645	7752837	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7752838	7752905	1	+	0	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7752838	7752905	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7752906	7753132	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7753133	7753177	0.98	+	1	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7753133	7753177	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7753178	7753268	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7753269	7753288	0.98	+	1	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7753269	7753288	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7753289	7753368	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7753369	7753473	0.98	+	2	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7753369	7753473	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7753474	7753616	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7753617	7753687	0.51	+	2	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7753617	7753687	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7753688	7753864	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7753865	7753930	0.96	+	0	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7753865	7753930	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7753931	7754078	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7754079	7754170	0.9	+	0	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7754079	7754170	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7754171	7754324	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7754325	7754394	0.39	+	1	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7754325	7754394	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7754395	7754509	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7754510	7754664	0.34	+	0	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7754510	7754664	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7754665	7754781	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7754782	7754830	0.46	+	1	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7754782	7754830	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7754831	7754914	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7754915	7755005	0.86	+	0	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7754915	7755005	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7755006	7755077	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7755078	7755137	0.7	+	2	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7755078	7755137	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7755138	7755261	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7755262	7755286	0.82	+	2	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7755262	7755286	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7755287	7755448	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7755449	7755530	0.87	+	1	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7755449	7755530	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7755531	7756202	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7756203	7756339	0.94	+	0	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7756203	7756339	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7756340	7756668	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7756669	7756833	0.96	+	1	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7756669	7756833	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7756834	7756951	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7756952	7757000	0.97	+	1	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7756952	7757000	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7757001	7757084	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7757085	7757175	0.98	+	0	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7757085	7757175	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7757176	7757247	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7757248	7757456	0.29	+	2	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7757248	7757456	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7757457	7758372	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7758373	7758509	0.88	+	0	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7758373	7758509	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7758510	7758838	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7758839	7759003	0.97	+	1	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7758839	7759003	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7759004	7759121	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7759122	7759170	0.97	+	1	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7759122	7759170	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7759171	7759254	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7759255	7759345	0.97	+	0	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7759255	7759345	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7759346	7759417	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7759418	7759477	0.52	+	2	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7759418	7759477	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7759478	7759601	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7759602	7759626	0.66	+	2	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7759602	7759626	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7759627	7759788	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7759789	7759879	0.65	+	1	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7759789	7759879	.	+	.	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	stop_codon	7759880	7759882	.	+	0	transcript_id "Ledus.S1G077100.t1"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	transcript	7752619	7759879	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	start_codon	7752619	7752621	.	+	0	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7752619	7752644	0.91	+	0	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7752619	7752644	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7752645	7752837	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7752838	7752915	0.91	+	1	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7752838	7752915	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7752916	7753132	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7753133	7753177	0.98	+	1	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7753133	7753177	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7753178	7753268	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7753269	7753288	0.98	+	1	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7753269	7753288	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7753289	7753368	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7753369	7753473	0.98	+	2	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7753369	7753473	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7753474	7753616	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7753617	7753687	0.49	+	2	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7753617	7753687	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7753688	7753864	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7753865	7753930	0.97	+	0	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7753865	7753930	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7753931	7754078	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7754079	7754170	0.88	+	0	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7754079	7754170	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7754171	7754324	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7754325	7754394	0.4	+	1	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7754325	7754394	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7754395	7754509	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7754510	7754664	0.37	+	0	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7754510	7754664	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7754665	7754781	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7754782	7754830	0.44	+	1	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7754782	7754830	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7754831	7754914	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7754915	7755005	0.91	+	0	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7754915	7755005	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7755006	7755077	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7755078	7755137	0.67	+	2	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7755078	7755137	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7755138	7755261	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7755262	7755286	0.78	+	2	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7755262	7755286	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7755287	7755448	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7755449	7755530	0.84	+	1	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7755449	7755530	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7755531	7756202	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7756203	7756339	0.92	+	0	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7756203	7756339	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7756340	7756668	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7756669	7756833	0.98	+	1	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7756669	7756833	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7756834	7756951	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7756952	7757000	0.94	+	1	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7756952	7757000	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7757001	7757084	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7757085	7757175	0.93	+	0	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7757085	7757175	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7757176	7757247	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7757248	7757456	0.3	+	2	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7757248	7757456	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7757457	7758372	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7758373	7758509	0.85	+	0	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7758373	7758509	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7758510	7758838	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7758839	7759003	0.99	+	1	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7758839	7759003	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7759004	7759121	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7759122	7759170	0.98	+	1	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7759122	7759170	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7759171	7759254	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7759255	7759345	0.98	+	0	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7759255	7759345	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7759346	7759417	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7759418	7759477	0.57	+	2	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7759418	7759477	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7759478	7759601	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7759602	7759626	0.64	+	2	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7759602	7759626	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	intron	7759627	7759788	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	CDS	7759789	7759879	0.62	+	1	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	exon	7759789	7759879	.	+	.	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
Ledus.S1	AUGUSTUS	stop_codon	7759880	7759882	.	+	0	transcript_id "Ledus.S1G077100.t2"; gene_id "Ledus.S1G077100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13148.t1 is derived from g6958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7392301	7392603	.	-	.	Ledus.S6G021000
Ledus.S6	AUGUSTUS	transcript	7392301	7392603	.	-	.	transcript_id "Ledus.S6G021000.t1"; gene_id "Ledus.S6G021000"
Ledus.S6	AUGUSTUS	stop_codon	7392298	7392300	.	-	0	transcript_id "Ledus.S6G021000.t1"; gene_id "Ledus.S6G021000"
Ledus.S6	AUGUSTUS	CDS	7392301	7392603	0.89	-	0	transcript_id "Ledus.S6G021000.t1"; gene_id "Ledus.S6G021000"
Ledus.S6	AUGUSTUS	exon	7392301	7392603	.	-	.	transcript_id "Ledus.S6G021000.t1"; gene_id "Ledus.S6G021000"
Ledus.S6	AUGUSTUS	start_codon	7392601	7392603	.	-	0	transcript_id "Ledus.S6G021000.t1"; gene_id "Ledus.S6G021000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2336.t1 is derived from g9199.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17254108	17254782	.	+	.	Ledus.S2G221800
Ledus.S2	AUGUSTUS	transcript	17254108	17254782	.	+	.	transcript_id "Ledus.S2G221800.t1"; gene_id "Ledus.S2G221800"
Ledus.S2	AUGUSTUS	start_codon	17254108	17254110	.	+	0	transcript_id "Ledus.S2G221800.t1"; gene_id "Ledus.S2G221800"
Ledus.S2	AUGUSTUS	CDS	17254108	17254782	0.93	+	0	transcript_id "Ledus.S2G221800.t1"; gene_id "Ledus.S2G221800"
Ledus.S2	AUGUSTUS	exon	17254108	17254782	.	+	.	transcript_id "Ledus.S2G221800.t1"; gene_id "Ledus.S2G221800"
Ledus.S2	AUGUSTUS	stop_codon	17254783	17254785	.	+	0	transcript_id "Ledus.S2G221800.t1"; gene_id "Ledus.S2G221800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg277.t1 is derived from g7138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1362611	1363765	.	-	.	Ledus.S2G015900
Ledus.S2	AUGUSTUS	transcript	1362611	1363765	.	-	.	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	stop_codon	1362608	1362610	.	-	0	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	CDS	1362611	1362811	0.53	-	0	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	exon	1362611	1362811	.	-	.	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	intron	1362812	1362916	.	-	.	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	CDS	1362917	1363043	0.86	-	1	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	exon	1362917	1363043	.	-	.	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	intron	1363044	1363129	.	-	.	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	CDS	1363130	1363323	1	-	0	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	exon	1363130	1363323	.	-	.	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	intron	1363324	1363409	.	-	.	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	CDS	1363410	1363519	1	-	2	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	exon	1363410	1363519	.	-	.	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	intron	1363520	1363611	.	-	.	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	CDS	1363612	1363765	0.73	-	0	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	exon	1363612	1363765	.	-	.	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
Ledus.S2	AUGUSTUS	start_codon	1363763	1363765	.	-	0	transcript_id "Ledus.S2G015900.t1"; gene_id "Ledus.S2G015900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10723.t1 is derived from g11753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17371987	17373845	.	+	.	Ledus.S3G220000
Ledus.S3	AUGUSTUS	transcript	17371987	17373845	.	+	.	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	start_codon	17371987	17371989	.	+	0	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	CDS	17371987	17372679	0.95	+	0	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	exon	17371987	17372679	.	+	.	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	intron	17372680	17372766	.	+	.	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	CDS	17372767	17372918	1	+	0	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	exon	17372767	17372918	.	+	.	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	intron	17372919	17372996	.	+	.	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	CDS	17372997	17373325	1	+	1	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	exon	17372997	17373325	.	+	.	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	intron	17373326	17373408	.	+	.	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	CDS	17373409	17373845	1	+	2	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	exon	17373409	17373845	.	+	.	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
Ledus.S3	AUGUSTUS	stop_codon	17373846	17373848	.	+	0	transcript_id "Ledus.S3G220000.t1"; gene_id "Ledus.S3G220000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9293.t1 is derived from g10323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5820508	5821018	.	-	.	Ledus.S3G077000
Ledus.S3	AUGUSTUS	transcript	5820508	5821018	.	-	.	transcript_id "Ledus.S3G077000.t1"; gene_id "Ledus.S3G077000"
Ledus.S3	AUGUSTUS	stop_codon	5820505	5820507	.	-	0	transcript_id "Ledus.S3G077000.t1"; gene_id "Ledus.S3G077000"
Ledus.S3	AUGUSTUS	CDS	5820508	5820658	0.99	-	1	transcript_id "Ledus.S3G077000.t1"; gene_id "Ledus.S3G077000"
Ledus.S3	AUGUSTUS	exon	5820508	5820658	.	-	.	transcript_id "Ledus.S3G077000.t1"; gene_id "Ledus.S3G077000"
Ledus.S3	AUGUSTUS	intron	5820659	5820968	.	-	.	transcript_id "Ledus.S3G077000.t1"; gene_id "Ledus.S3G077000"
Ledus.S3	AUGUSTUS	CDS	5820969	5821018	0.86	-	0	transcript_id "Ledus.S3G077000.t1"; gene_id "Ledus.S3G077000"
Ledus.S3	AUGUSTUS	exon	5820969	5821018	.	-	.	transcript_id "Ledus.S3G077000.t1"; gene_id "Ledus.S3G077000"
Ledus.S3	AUGUSTUS	start_codon	5821016	5821018	.	-	0	transcript_id "Ledus.S3G077000.t1"; gene_id "Ledus.S3G077000"
# This transcript jg8136.t2 is derived from g12807.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8137.t1 is derived from g12808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9326124	9326491	.	-	.	Ledus.S5G091500
Ledus.S5	AUGUSTUS	transcript	9326124	9326491	.	-	.	transcript_id "Ledus.S5G091500.t1"; gene_id "Ledus.S5G091500"
Ledus.S5	AUGUSTUS	stop_codon	9326121	9326123	.	-	0	transcript_id "Ledus.S5G091500.t1"; gene_id "Ledus.S5G091500"
Ledus.S5	AUGUSTUS	CDS	9326124	9326223	0.87	-	1	transcript_id "Ledus.S5G091500.t1"; gene_id "Ledus.S5G091500"
Ledus.S5	AUGUSTUS	exon	9326124	9326223	.	-	.	transcript_id "Ledus.S5G091500.t1"; gene_id "Ledus.S5G091500"
Ledus.S5	AUGUSTUS	intron	9326224	9326342	.	-	.	transcript_id "Ledus.S5G091500.t1"; gene_id "Ledus.S5G091500"
Ledus.S5	AUGUSTUS	CDS	9326343	9326491	0.55	-	0	transcript_id "Ledus.S5G091500.t1"; gene_id "Ledus.S5G091500"
Ledus.S5	AUGUSTUS	exon	9326343	9326491	.	-	.	transcript_id "Ledus.S5G091500.t1"; gene_id "Ledus.S5G091500"
Ledus.S5	AUGUSTUS	start_codon	9326489	9326491	.	-	0	transcript_id "Ledus.S5G091500.t1"; gene_id "Ledus.S5G091500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3391.t1 is derived from g826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8031011	8031587	.	+	.	Ledus.S1G081200
Ledus.S1	AUGUSTUS	transcript	8031011	8031587	.	+	.	transcript_id "Ledus.S1G081200.t1"; gene_id "Ledus.S1G081200"
Ledus.S1	AUGUSTUS	start_codon	8031011	8031013	.	+	0	transcript_id "Ledus.S1G081200.t1"; gene_id "Ledus.S1G081200"
Ledus.S1	AUGUSTUS	CDS	8031011	8031146	0.99	+	0	transcript_id "Ledus.S1G081200.t1"; gene_id "Ledus.S1G081200"
Ledus.S1	AUGUSTUS	exon	8031011	8031146	.	+	.	transcript_id "Ledus.S1G081200.t1"; gene_id "Ledus.S1G081200"
Ledus.S1	AUGUSTUS	intron	8031147	8031326	.	+	.	transcript_id "Ledus.S1G081200.t1"; gene_id "Ledus.S1G081200"
Ledus.S1	AUGUSTUS	CDS	8031327	8031450	1	+	2	transcript_id "Ledus.S1G081200.t1"; gene_id "Ledus.S1G081200"
Ledus.S1	AUGUSTUS	exon	8031327	8031450	.	+	.	transcript_id "Ledus.S1G081200.t1"; gene_id "Ledus.S1G081200"
Ledus.S1	AUGUSTUS	intron	8031451	8031544	.	+	.	transcript_id "Ledus.S1G081200.t1"; gene_id "Ledus.S1G081200"
Ledus.S1	AUGUSTUS	CDS	8031545	8031587	1	+	1	transcript_id "Ledus.S1G081200.t1"; gene_id "Ledus.S1G081200"
Ledus.S1	AUGUSTUS	exon	8031545	8031587	.	+	.	transcript_id "Ledus.S1G081200.t1"; gene_id "Ledus.S1G081200"
Ledus.S1	AUGUSTUS	stop_codon	8031588	8031590	.	+	0	transcript_id "Ledus.S1G081200.t1"; gene_id "Ledus.S1G081200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4807.t1 is derived from g2245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19884299	19885817	.	-	.	Ledus.S1G222800
Ledus.S1	AUGUSTUS	transcript	19884299	19885817	.	-	.	transcript_id "Ledus.S1G222800.t1"; gene_id "Ledus.S1G222800"
Ledus.S1	AUGUSTUS	stop_codon	19884296	19884298	.	-	0	transcript_id "Ledus.S1G222800.t1"; gene_id "Ledus.S1G222800"
Ledus.S1	AUGUSTUS	CDS	19884299	19884788	0.35	-	1	transcript_id "Ledus.S1G222800.t1"; gene_id "Ledus.S1G222800"
Ledus.S1	AUGUSTUS	exon	19884299	19884788	.	-	.	transcript_id "Ledus.S1G222800.t1"; gene_id "Ledus.S1G222800"
Ledus.S1	AUGUSTUS	intron	19884789	19885086	.	-	.	transcript_id "Ledus.S1G222800.t1"; gene_id "Ledus.S1G222800"
Ledus.S1	AUGUSTUS	CDS	19885087	19885817	0.41	-	0	transcript_id "Ledus.S1G222800.t1"; gene_id "Ledus.S1G222800"
Ledus.S1	AUGUSTUS	exon	19885087	19885817	.	-	.	transcript_id "Ledus.S1G222800.t1"; gene_id "Ledus.S1G222800"
Ledus.S1	AUGUSTUS	start_codon	19885815	19885817	.	-	0	transcript_id "Ledus.S1G222800.t1"; gene_id "Ledus.S1G222800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7103.t1 is derived from g6634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1553876	1558392	.	+	.	Ledus.C7G016400
Ledus.C7	AUGUSTUS	transcript	1553876	1558392	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	start_codon	1553876	1553878	.	+	0	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1553876	1554325	1	+	0	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1553876	1554325	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	intron	1554326	1554461	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1554462	1554633	1	+	0	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1554462	1554633	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	intron	1554634	1554735	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1554736	1554953	0.99	+	2	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1554736	1554953	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	intron	1554954	1555033	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1555034	1555094	1	+	0	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1555034	1555094	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	intron	1555095	1555315	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1555316	1555388	1	+	2	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1555316	1555388	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	intron	1555389	1555530	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1555531	1555608	1	+	1	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1555531	1555608	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	intron	1555609	1555849	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1555850	1556007	1	+	1	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1555850	1556007	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	intron	1556008	1556199	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1556200	1556368	1	+	2	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1556200	1556368	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	intron	1556369	1556591	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1556592	1557063	1	+	1	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1556592	1557063	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	intron	1557064	1557228	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1557229	1557543	0.91	+	0	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1557229	1557543	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	intron	1557544	1557652	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1557653	1557871	0.97	+	0	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1557653	1557871	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	intron	1557872	1557986	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1557987	1558120	0.99	+	0	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1557987	1558120	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	intron	1558121	1558226	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	CDS	1558227	1558392	1	+	1	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	exon	1558227	1558392	.	+	.	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
Ledus.C7	AUGUSTUS	stop_codon	1558393	1558395	.	+	0	transcript_id "Ledus.C7G016400.t1"; gene_id "Ledus.C7G016400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4990.t1 is derived from g2428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21007622	21009711	.	+	.	Ledus.S1G241100
Ledus.S1	AUGUSTUS	transcript	21007622	21009711	.	+	.	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	start_codon	21007622	21007624	.	+	0	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	CDS	21007622	21007660	0.37	+	0	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	exon	21007622	21007660	.	+	.	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	intron	21007661	21007737	.	+	.	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	CDS	21007738	21007766	0.96	+	0	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	exon	21007738	21007766	.	+	.	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	intron	21007767	21008265	.	+	.	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	CDS	21008266	21008872	0.87	+	1	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	exon	21008266	21008872	.	+	.	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	intron	21008873	21009139	.	+	.	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	CDS	21009140	21009360	1	+	0	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	exon	21009140	21009360	.	+	.	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	intron	21009361	21009497	.	+	.	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	CDS	21009498	21009711	0.99	+	1	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	exon	21009498	21009711	.	+	.	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
Ledus.S1	AUGUSTUS	stop_codon	21009712	21009714	.	+	0	transcript_id "Ledus.S1G241100.t1"; gene_id "Ledus.S1G241100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1755.t1 is derived from g8617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12343519	12344936	.	+	.	Ledus.S2G163700
Ledus.S2	AUGUSTUS	transcript	12343519	12344936	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	start_codon	12343519	12343521	.	+	0	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	CDS	12343519	12343685	0.99	+	0	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	exon	12343519	12343685	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	intron	12343686	12343755	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	CDS	12343756	12343840	1	+	1	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	exon	12343756	12343840	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	intron	12343841	12343904	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	CDS	12343905	12343946	1	+	0	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	exon	12343905	12343946	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	intron	12343947	12344020	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	CDS	12344021	12344186	1	+	0	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	exon	12344021	12344186	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	intron	12344187	12344274	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	CDS	12344275	12344327	1	+	2	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	exon	12344275	12344327	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	intron	12344328	12344416	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	CDS	12344417	12344638	1	+	0	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	exon	12344417	12344638	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	intron	12344639	12344720	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	CDS	12344721	12344767	1	+	0	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	exon	12344721	12344767	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	intron	12344768	12344863	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	CDS	12344864	12344936	1	+	1	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	exon	12344864	12344936	.	+	.	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
Ledus.S2	AUGUSTUS	stop_codon	12344937	12344939	.	+	0	transcript_id "Ledus.S2G163700.t1"; gene_id "Ledus.S2G163700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10149.t1 is derived from g11179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13190454	13191060	.	-	.	Ledus.S3G162600
Ledus.S3	AUGUSTUS	transcript	13190454	13191060	.	-	.	transcript_id "Ledus.S3G162600.t1"; gene_id "Ledus.S3G162600"
Ledus.S3	AUGUSTUS	stop_codon	13190451	13190453	.	-	0	transcript_id "Ledus.S3G162600.t1"; gene_id "Ledus.S3G162600"
Ledus.S3	AUGUSTUS	CDS	13190454	13190574	1	-	1	transcript_id "Ledus.S3G162600.t1"; gene_id "Ledus.S3G162600"
Ledus.S3	AUGUSTUS	exon	13190454	13190574	.	-	.	transcript_id "Ledus.S3G162600.t1"; gene_id "Ledus.S3G162600"
Ledus.S3	AUGUSTUS	intron	13190575	13190893	.	-	.	transcript_id "Ledus.S3G162600.t1"; gene_id "Ledus.S3G162600"
Ledus.S3	AUGUSTUS	CDS	13190894	13191060	0.9	-	0	transcript_id "Ledus.S3G162600.t1"; gene_id "Ledus.S3G162600"
Ledus.S3	AUGUSTUS	exon	13190894	13191060	.	-	.	transcript_id "Ledus.S3G162600.t1"; gene_id "Ledus.S3G162600"
Ledus.S3	AUGUSTUS	start_codon	13191058	13191060	.	-	0	transcript_id "Ledus.S3G162600.t1"; gene_id "Ledus.S3G162600"
# This transcript jg6012.t2 is derived from g3455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6013.t1 is derived from g3456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28330501	28331889	.	+	.	Ledus.S1G343400
Ledus.S1	AUGUSTUS	transcript	28330501	28331889	.	+	.	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	start_codon	28330501	28330503	.	+	0	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	CDS	28330501	28330618	0.52	+	0	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	exon	28330501	28330618	.	+	.	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	intron	28330619	28330735	.	+	.	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	CDS	28330736	28330869	0.97	+	2	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	exon	28330736	28330869	.	+	.	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	intron	28330870	28331116	.	+	.	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	CDS	28331117	28331261	1	+	0	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	exon	28331117	28331261	.	+	.	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	intron	28331262	28331350	.	+	.	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	CDS	28331351	28331430	1	+	2	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	exon	28331351	28331430	.	+	.	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	intron	28331431	28331523	.	+	.	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	CDS	28331524	28331889	1	+	0	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	exon	28331524	28331889	.	+	.	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
Ledus.S1	AUGUSTUS	stop_codon	28331890	28331892	.	+	0	transcript_id "Ledus.S1G343400.t1"; gene_id "Ledus.S1G343400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7566.t1 is derived from g12237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4077240	4080694	.	-	.	Ledus.S5G034400
Ledus.S5	AUGUSTUS	transcript	4077240	4080694	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	stop_codon	4077237	4077239	.	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4077240	4077320	1	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4077240	4077320	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4077321	4077445	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4077446	4077536	1	-	1	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4077446	4077536	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4077537	4077625	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4077626	4077729	1	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4077626	4077729	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4077730	4077830	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4077831	4077959	0.96	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4077831	4077959	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4077960	4078057	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4078058	4078162	1	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4078058	4078162	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4078163	4078348	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4078349	4078483	1	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4078349	4078483	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4078484	4078575	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4078576	4078662	1	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4078576	4078662	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4078663	4078783	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4078784	4078880	1	-	1	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4078784	4078880	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4078881	4078969	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4078970	4079187	1	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4078970	4079187	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4079188	4079277	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4079278	4079343	1	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4079278	4079343	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4079344	4079458	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4079459	4079554	0.99	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4079459	4079554	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4079555	4079660	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4079661	4079711	1	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4079661	4079711	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4079712	4079877	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4079878	4079937	1	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4079878	4079937	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4079938	4080042	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4080043	4080129	0.98	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4080043	4080129	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4080130	4080213	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4080214	4080303	1	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4080214	4080303	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4080304	4080405	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4080406	4080470	1	-	2	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4080406	4080470	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	intron	4080471	4080627	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	CDS	4080628	4080694	0.98	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	exon	4080628	4080694	.	-	.	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
Ledus.S5	AUGUSTUS	start_codon	4080692	4080694	.	-	0	transcript_id "Ledus.S5G034400.t1"; gene_id "Ledus.S5G034400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7455.t1 is derived from g12126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2852310	2852669	.	-	.	Ledus.S5G023300
Ledus.S5	AUGUSTUS	transcript	2852310	2852669	.	-	.	transcript_id "Ledus.S5G023300.t1"; gene_id "Ledus.S5G023300"
Ledus.S5	AUGUSTUS	stop_codon	2852307	2852309	.	-	0	transcript_id "Ledus.S5G023300.t1"; gene_id "Ledus.S5G023300"
Ledus.S5	AUGUSTUS	CDS	2852310	2852669	0.77	-	0	transcript_id "Ledus.S5G023300.t1"; gene_id "Ledus.S5G023300"
Ledus.S5	AUGUSTUS	exon	2852310	2852669	.	-	.	transcript_id "Ledus.S5G023300.t1"; gene_id "Ledus.S5G023300"
Ledus.S5	AUGUSTUS	start_codon	2852667	2852669	.	-	0	transcript_id "Ledus.S5G023300.t1"; gene_id "Ledus.S5G023300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5664.t1 is derived from g3103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25699123	25699923	.	-	.	Ledus.S1G308500
Ledus.S1	AUGUSTUS	transcript	25699123	25699923	.	-	.	transcript_id "Ledus.S1G308500.t1"; gene_id "Ledus.S1G308500"
Ledus.S1	AUGUSTUS	stop_codon	25699120	25699122	.	-	0	transcript_id "Ledus.S1G308500.t1"; gene_id "Ledus.S1G308500"
Ledus.S1	AUGUSTUS	CDS	25699123	25699923	0.98	-	0	transcript_id "Ledus.S1G308500.t1"; gene_id "Ledus.S1G308500"
Ledus.S1	AUGUSTUS	exon	25699123	25699923	.	-	.	transcript_id "Ledus.S1G308500.t1"; gene_id "Ledus.S1G308500"
Ledus.S1	AUGUSTUS	start_codon	25699921	25699923	.	-	0	transcript_id "Ledus.S1G308500.t1"; gene_id "Ledus.S1G308500"
Ledus.S1	AUGUSTUS	transcript	25699123	25699599	.	-	.	transcript_id "Ledus.S1G308500.t2"; gene_id "Ledus.S1G308500"
Ledus.S1	AUGUSTUS	stop_codon	25699120	25699122	.	-	0	transcript_id "Ledus.S1G308500.t2"; gene_id "Ledus.S1G308500"
Ledus.S1	AUGUSTUS	CDS	25699123	25699599	0.93	-	0	transcript_id "Ledus.S1G308500.t2"; gene_id "Ledus.S1G308500"
Ledus.S1	AUGUSTUS	exon	25699123	25699599	.	-	.	transcript_id "Ledus.S1G308500.t2"; gene_id "Ledus.S1G308500"
Ledus.S1	AUGUSTUS	start_codon	25699597	25699599	.	-	0	transcript_id "Ledus.S1G308500.t2"; gene_id "Ledus.S1G308500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11721.t1 is derived from g5340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6264137	6265492	.	-	.	Ledus.S4G087700
Ledus.S4	AUGUSTUS	transcript	6264137	6265492	.	-	.	transcript_id "Ledus.S4G087700.t1"; gene_id "Ledus.S4G087700"
Ledus.S4	AUGUSTUS	stop_codon	6264134	6264136	.	-	0	transcript_id "Ledus.S4G087700.t1"; gene_id "Ledus.S4G087700"
Ledus.S4	AUGUSTUS	CDS	6264137	6265492	0.92	-	0	transcript_id "Ledus.S4G087700.t1"; gene_id "Ledus.S4G087700"
Ledus.S4	AUGUSTUS	exon	6264137	6265492	.	-	.	transcript_id "Ledus.S4G087700.t1"; gene_id "Ledus.S4G087700"
Ledus.S4	AUGUSTUS	start_codon	6265490	6265492	.	-	0	transcript_id "Ledus.S4G087700.t1"; gene_id "Ledus.S4G087700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12048.t1 is derived from g5667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9181812	9184742	.	-	.	Ledus.S4G120400
Ledus.S4	AUGUSTUS	transcript	9181812	9183560	.	-	.	transcript_id "Ledus.S4G120400.t1"; gene_id "Ledus.S4G120400"
Ledus.S4	AUGUSTUS	stop_codon	9181809	9181811	.	-	0	transcript_id "Ledus.S4G120400.t1"; gene_id "Ledus.S4G120400"
Ledus.S4	AUGUSTUS	CDS	9181812	9183560	1	-	0	transcript_id "Ledus.S4G120400.t1"; gene_id "Ledus.S4G120400"
Ledus.S4	AUGUSTUS	exon	9181812	9183560	.	-	.	transcript_id "Ledus.S4G120400.t1"; gene_id "Ledus.S4G120400"
Ledus.S4	AUGUSTUS	start_codon	9183558	9183560	.	-	0	transcript_id "Ledus.S4G120400.t1"; gene_id "Ledus.S4G120400"
Ledus.S4	AUGUSTUS	transcript	9181812	9184742	.	-	.	transcript_id "Ledus.S4G120400.t2"; gene_id "Ledus.S4G120400"
Ledus.S4	AUGUSTUS	stop_codon	9181809	9181811	.	-	0	transcript_id "Ledus.S4G120400.t2"; gene_id "Ledus.S4G120400"
Ledus.S4	AUGUSTUS	CDS	9181812	9184742	0.93	-	0	transcript_id "Ledus.S4G120400.t2"; gene_id "Ledus.S4G120400"
Ledus.S4	AUGUSTUS	exon	9181812	9184742	.	-	.	transcript_id "Ledus.S4G120400.t2"; gene_id "Ledus.S4G120400"
Ledus.S4	AUGUSTUS	start_codon	9184740	9184742	.	-	0	transcript_id "Ledus.S4G120400.t2"; gene_id "Ledus.S4G120400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5572.t1 is derived from g3011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25185594	25186436	.	+	.	Ledus.S1G299300
Ledus.S1	AUGUSTUS	transcript	25185594	25186436	.	+	.	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	start_codon	25185594	25185596	.	+	0	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	CDS	25185594	25185776	0.59	+	0	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	exon	25185594	25185776	.	+	.	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	intron	25185777	25185877	.	+	.	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	CDS	25185878	25185991	1	+	0	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	exon	25185878	25185991	.	+	.	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	intron	25185992	25186111	.	+	.	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	CDS	25186112	25186340	1	+	0	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	exon	25186112	25186340	.	+	.	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	intron	25186341	25186434	.	+	.	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	CDS	25186435	25186436	1	+	2	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	exon	25186435	25186436	.	+	.	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
Ledus.S1	AUGUSTUS	stop_codon	25186437	25186439	.	+	0	transcript_id "Ledus.S1G299300.t1"; gene_id "Ledus.S1G299300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9696.t1 is derived from g10726.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9092138	9094278	.	-	.	Ledus.S3G117300
Ledus.S3	AUGUSTUS	transcript	9092138	9094278	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	stop_codon	9092135	9092137	.	-	0	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	CDS	9092138	9092238	0.56	-	2	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	exon	9092138	9092238	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	intron	9092239	9092352	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	CDS	9092353	9092469	0.48	-	2	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	exon	9092353	9092469	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	intron	9092470	9092620	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	CDS	9092621	9092714	0.95	-	0	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	exon	9092621	9092714	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	intron	9092715	9092824	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	CDS	9092825	9092920	1	-	0	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	exon	9092825	9092920	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	intron	9092921	9093119	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	CDS	9093120	9093289	1	-	2	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	exon	9093120	9093289	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	intron	9093290	9093430	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	CDS	9093431	9093520	1	-	2	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	exon	9093431	9093520	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	intron	9093521	9093668	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	CDS	9093669	9093798	0.99	-	0	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	exon	9093669	9093798	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	intron	9093799	9093902	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	CDS	9093903	9094088	1	-	0	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	exon	9093903	9094088	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	intron	9094089	9094164	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	CDS	9094165	9094278	1	-	0	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	exon	9094165	9094278	.	-	.	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
Ledus.S3	AUGUSTUS	start_codon	9094276	9094278	.	-	0	transcript_id "Ledus.S3G117300.t1"; gene_id "Ledus.S3G117300"
# This transcript jg11255.t2 is derived from g4873.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11256.t1 is derived from g4874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2977803	2978634	.	+	.	Ledus.S4G041200
Ledus.S4	AUGUSTUS	transcript	2977803	2978634	.	+	.	transcript_id "Ledus.S4G041200.t1"; gene_id "Ledus.S4G041200"
Ledus.S4	AUGUSTUS	start_codon	2977803	2977805	.	+	0	transcript_id "Ledus.S4G041200.t1"; gene_id "Ledus.S4G041200"
Ledus.S4	AUGUSTUS	CDS	2977803	2978163	0.52	+	0	transcript_id "Ledus.S4G041200.t1"; gene_id "Ledus.S4G041200"
Ledus.S4	AUGUSTUS	exon	2977803	2978163	.	+	.	transcript_id "Ledus.S4G041200.t1"; gene_id "Ledus.S4G041200"
Ledus.S4	AUGUSTUS	intron	2978164	2978323	.	+	.	transcript_id "Ledus.S4G041200.t1"; gene_id "Ledus.S4G041200"
Ledus.S4	AUGUSTUS	CDS	2978324	2978634	0.8	+	2	transcript_id "Ledus.S4G041200.t1"; gene_id "Ledus.S4G041200"
Ledus.S4	AUGUSTUS	exon	2978324	2978634	.	+	.	transcript_id "Ledus.S4G041200.t1"; gene_id "Ledus.S4G041200"
Ledus.S4	AUGUSTUS	stop_codon	2978635	2978637	.	+	0	transcript_id "Ledus.S4G041200.t1"; gene_id "Ledus.S4G041200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg956.t1 is derived from g7817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6307760	6308341	.	+	.	Ledus.S2G083800
Ledus.S2	AUGUSTUS	transcript	6307760	6308341	.	+	.	transcript_id "Ledus.S2G083800.t1"; gene_id "Ledus.S2G083800"
Ledus.S2	AUGUSTUS	start_codon	6307760	6307762	.	+	0	transcript_id "Ledus.S2G083800.t1"; gene_id "Ledus.S2G083800"
Ledus.S2	AUGUSTUS	CDS	6307760	6308341	0.97	+	0	transcript_id "Ledus.S2G083800.t1"; gene_id "Ledus.S2G083800"
Ledus.S2	AUGUSTUS	exon	6307760	6308341	.	+	.	transcript_id "Ledus.S2G083800.t1"; gene_id "Ledus.S2G083800"
Ledus.S2	AUGUSTUS	stop_codon	6308342	6308344	.	+	0	transcript_id "Ledus.S2G083800.t1"; gene_id "Ledus.S2G083800"
# This transcript jg10738.t2 is derived from g11769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10739.t1 is derived from g11770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17421799	17423020	.	+	.	Ledus.S3G221600
Ledus.S3	AUGUSTUS	transcript	17421799	17423020	.	+	.	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	start_codon	17421799	17421801	.	+	0	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	CDS	17421799	17422068	1	+	0	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	exon	17421799	17422068	.	+	.	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	intron	17422069	17422287	.	+	.	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	CDS	17422288	17422425	1	+	0	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	exon	17422288	17422425	.	+	.	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	intron	17422426	17422511	.	+	.	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	CDS	17422512	17422598	1	+	0	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	exon	17422512	17422598	.	+	.	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	intron	17422599	17422714	.	+	.	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	CDS	17422715	17422762	1	+	0	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	exon	17422715	17422762	.	+	.	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	intron	17422763	17422849	.	+	.	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	CDS	17422850	17423020	0.9	+	0	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	exon	17422850	17423020	.	+	.	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
Ledus.S3	AUGUSTUS	stop_codon	17423021	17423023	.	+	0	transcript_id "Ledus.S3G221600.t1"; gene_id "Ledus.S3G221600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2588.t1 is derived from g21.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	169924	172661	.	-	.	Ledus.S1G000900
Ledus.S1	AUGUSTUS	transcript	169924	172661	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	stop_codon	169921	169923	.	-	0	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	CDS	169924	169970	0.41	-	2	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	exon	169924	169970	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	intron	169971	170061	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	CDS	170062	170211	0.6	-	2	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	exon	170062	170211	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	intron	170212	170658	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	CDS	170659	170931	0.77	-	2	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	exon	170659	170931	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	intron	170932	171038	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	CDS	171039	171086	1	-	2	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	exon	171039	171086	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	intron	171087	171169	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	CDS	171170	171241	1	-	2	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	exon	171170	171241	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	intron	171242	171375	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	CDS	171376	171444	0.99	-	2	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	exon	171376	171444	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	intron	171445	171554	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	CDS	171555	171663	0.95	-	0	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	exon	171555	171663	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	intron	171664	171818	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	CDS	171819	171934	1	-	2	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	exon	171819	171934	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	intron	171935	172038	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	CDS	172039	172132	1	-	0	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	exon	172039	172132	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	intron	172133	172247	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	CDS	172248	172401	1	-	1	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	exon	172248	172401	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	intron	172402	172491	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	CDS	172492	172661	0.99	-	0	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	exon	172492	172661	.	-	.	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
Ledus.S1	AUGUSTUS	start_codon	172659	172661	.	-	0	transcript_id "Ledus.S1G000900.t1"; gene_id "Ledus.S1G000900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3292.t1 is derived from g727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7336380	7339867	.	-	.	Ledus.S1G071300
Ledus.S1	AUGUSTUS	transcript	7336380	7339867	.	-	.	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	stop_codon	7336377	7336379	.	-	0	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	CDS	7336380	7336404	0.9	-	1	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	exon	7336380	7336404	.	-	.	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	intron	7336405	7336483	.	-	.	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	CDS	7336484	7336498	0.78	-	1	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	exon	7336484	7336498	.	-	.	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	intron	7336499	7336611	.	-	.	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	CDS	7336612	7336622	0.45	-	0	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	exon	7336612	7336622	.	-	.	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	intron	7336623	7336849	.	-	.	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	CDS	7336850	7339867	0.48	-	0	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	exon	7336850	7339867	.	-	.	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
Ledus.S1	AUGUSTUS	start_codon	7339865	7339867	.	-	0	transcript_id "Ledus.S1G071300.t1"; gene_id "Ledus.S1G071300"
# This transcript jg5683.t2 is derived from g3122.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5684.t1 is derived from g3123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25829467	25829700	.	+	.	Ledus.S1G310500
Ledus.S1	AUGUSTUS	transcript	25829467	25829700	.	+	.	transcript_id "Ledus.S1G310500.t1"; gene_id "Ledus.S1G310500"
Ledus.S1	AUGUSTUS	start_codon	25829467	25829469	.	+	0	transcript_id "Ledus.S1G310500.t1"; gene_id "Ledus.S1G310500"
Ledus.S1	AUGUSTUS	CDS	25829467	25829700	0.66	+	0	transcript_id "Ledus.S1G310500.t1"; gene_id "Ledus.S1G310500"
Ledus.S1	AUGUSTUS	exon	25829467	25829700	.	+	.	transcript_id "Ledus.S1G310500.t1"; gene_id "Ledus.S1G310500"
Ledus.S1	AUGUSTUS	stop_codon	25829701	25829703	.	+	0	transcript_id "Ledus.S1G310500.t1"; gene_id "Ledus.S1G310500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8969.t1 is derived from g9999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3586975	3589032	.	-	.	Ledus.S3G044600
Ledus.S3	AUGUSTUS	transcript	3586975	3589032	.	-	.	transcript_id "Ledus.S3G044600.t1"; gene_id "Ledus.S3G044600"
Ledus.S3	AUGUSTUS	stop_codon	3586972	3586974	.	-	0	transcript_id "Ledus.S3G044600.t1"; gene_id "Ledus.S3G044600"
Ledus.S3	AUGUSTUS	CDS	3586975	3587381	0.9	-	2	transcript_id "Ledus.S3G044600.t1"; gene_id "Ledus.S3G044600"
Ledus.S3	AUGUSTUS	exon	3586975	3587381	.	-	.	transcript_id "Ledus.S3G044600.t1"; gene_id "Ledus.S3G044600"
Ledus.S3	AUGUSTUS	intron	3587382	3587496	.	-	.	transcript_id "Ledus.S3G044600.t1"; gene_id "Ledus.S3G044600"
Ledus.S3	AUGUSTUS	CDS	3587497	3588487	0.54	-	0	transcript_id "Ledus.S3G044600.t1"; gene_id "Ledus.S3G044600"
Ledus.S3	AUGUSTUS	exon	3587497	3588487	.	-	.	transcript_id "Ledus.S3G044600.t1"; gene_id "Ledus.S3G044600"
Ledus.S3	AUGUSTUS	intron	3588488	3588639	.	-	.	transcript_id "Ledus.S3G044600.t1"; gene_id "Ledus.S3G044600"
Ledus.S3	AUGUSTUS	CDS	3588640	3589032	0.76	-	0	transcript_id "Ledus.S3G044600.t1"; gene_id "Ledus.S3G044600"
Ledus.S3	AUGUSTUS	exon	3588640	3589032	.	-	.	transcript_id "Ledus.S3G044600.t1"; gene_id "Ledus.S3G044600"
Ledus.S3	AUGUSTUS	start_codon	3589030	3589032	.	-	0	transcript_id "Ledus.S3G044600.t1"; gene_id "Ledus.S3G044600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9565.t1 is derived from g10595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7830899	7831646	.	+	.	Ledus.S3G104200
Ledus.S3	AUGUSTUS	transcript	7830899	7831646	.	+	.	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	start_codon	7830899	7830901	.	+	0	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	CDS	7830899	7831078	0.94	+	0	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	exon	7830899	7831078	.	+	.	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	intron	7831079	7831178	.	+	.	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	CDS	7831179	7831189	0.99	+	0	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	exon	7831179	7831189	.	+	.	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	intron	7831190	7831446	.	+	.	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	CDS	7831447	7831543	0.97	+	1	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	exon	7831447	7831543	.	+	.	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	intron	7831544	7831643	.	+	.	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	CDS	7831644	7831646	1	+	0	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	exon	7831644	7831646	.	+	.	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
Ledus.S3	AUGUSTUS	stop_codon	7831647	7831649	.	+	0	transcript_id "Ledus.S3G104200.t1"; gene_id "Ledus.S3G104200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5033.t1 is derived from g2472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21215453	21216556	.	-	.	Ledus.S1G245400
Ledus.S1	AUGUSTUS	transcript	21215453	21216556	.	-	.	transcript_id "Ledus.S1G245400.t1"; gene_id "Ledus.S1G245400"
Ledus.S1	AUGUSTUS	stop_codon	21215450	21215452	.	-	0	transcript_id "Ledus.S1G245400.t1"; gene_id "Ledus.S1G245400"
Ledus.S1	AUGUSTUS	CDS	21215453	21216556	1	-	0	transcript_id "Ledus.S1G245400.t1"; gene_id "Ledus.S1G245400"
Ledus.S1	AUGUSTUS	exon	21215453	21216556	.	-	.	transcript_id "Ledus.S1G245400.t1"; gene_id "Ledus.S1G245400"
Ledus.S1	AUGUSTUS	start_codon	21216554	21216556	.	-	0	transcript_id "Ledus.S1G245400.t1"; gene_id "Ledus.S1G245400"
Ledus.S1	AUGUSTUS	transcript	21215453	21215827	.	-	.	transcript_id "Ledus.S1G245400.t2"; gene_id "Ledus.S1G245400"
Ledus.S1	AUGUSTUS	stop_codon	21215450	21215452	.	-	0	transcript_id "Ledus.S1G245400.t2"; gene_id "Ledus.S1G245400"
Ledus.S1	AUGUSTUS	CDS	21215453	21215827	0.96	-	0	transcript_id "Ledus.S1G245400.t2"; gene_id "Ledus.S1G245400"
Ledus.S1	AUGUSTUS	exon	21215453	21215827	.	-	.	transcript_id "Ledus.S1G245400.t2"; gene_id "Ledus.S1G245400"
Ledus.S1	AUGUSTUS	start_codon	21215825	21215827	.	-	0	transcript_id "Ledus.S1G245400.t2"; gene_id "Ledus.S1G245400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5977.t1 is derived from g3420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28126049	28126788	.	-	.	Ledus.S1G339800
Ledus.S1	AUGUSTUS	transcript	28126049	28126788	.	-	.	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	stop_codon	28126046	28126048	.	-	0	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	CDS	28126049	28126120	1	-	0	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	exon	28126049	28126120	.	-	.	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	intron	28126121	28126244	.	-	.	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	CDS	28126245	28126395	0.52	-	1	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	exon	28126245	28126395	.	-	.	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	intron	28126396	28126471	.	-	.	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	CDS	28126472	28126583	0.91	-	2	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	exon	28126472	28126583	.	-	.	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	intron	28126584	28126751	.	-	.	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	CDS	28126752	28126788	0.7	-	0	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	exon	28126752	28126788	.	-	.	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
Ledus.S1	AUGUSTUS	start_codon	28126786	28126788	.	-	0	transcript_id "Ledus.S1G339800.t1"; gene_id "Ledus.S1G339800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1746.t1 is derived from g8608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12303412	12304563	.	+	.	Ledus.S2G162800
Ledus.S2	AUGUSTUS	transcript	12303412	12304563	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	start_codon	12303412	12303414	.	+	0	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	CDS	12303412	12303483	1	+	0	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	exon	12303412	12303483	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	intron	12303484	12303561	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	CDS	12303562	12303650	1	+	0	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	exon	12303562	12303650	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	intron	12303651	12303718	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	CDS	12303719	12303782	1	+	1	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	exon	12303719	12303782	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	intron	12303783	12303872	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	CDS	12303873	12303950	1	+	0	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	exon	12303873	12303950	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	intron	12303951	12304034	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	CDS	12304035	12304111	1	+	0	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	exon	12304035	12304111	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	intron	12304112	12304187	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	CDS	12304188	12304254	1	+	1	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	exon	12304188	12304254	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	intron	12304255	12304348	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	CDS	12304349	12304456	1	+	0	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	exon	12304349	12304456	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	intron	12304457	12304536	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	CDS	12304537	12304563	0.99	+	0	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	exon	12304537	12304563	.	+	.	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
Ledus.S2	AUGUSTUS	stop_codon	12304564	12304566	.	+	0	transcript_id "Ledus.S2G162800.t1"; gene_id "Ledus.S2G162800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7089.t1 is derived from g6620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1489410	1491900	.	-	.	Ledus.C7G015000
Ledus.C7	AUGUSTUS	transcript	1489410	1491900	.	-	.	transcript_id "Ledus.C7G015000.t1"; gene_id "Ledus.C7G015000"
Ledus.C7	AUGUSTUS	stop_codon	1489407	1489409	.	-	0	transcript_id "Ledus.C7G015000.t1"; gene_id "Ledus.C7G015000"
Ledus.C7	AUGUSTUS	CDS	1489410	1490036	0.99	-	0	transcript_id "Ledus.C7G015000.t1"; gene_id "Ledus.C7G015000"
Ledus.C7	AUGUSTUS	exon	1489410	1490036	.	-	.	transcript_id "Ledus.C7G015000.t1"; gene_id "Ledus.C7G015000"
Ledus.C7	AUGUSTUS	intron	1490037	1490156	.	-	.	transcript_id "Ledus.C7G015000.t1"; gene_id "Ledus.C7G015000"
Ledus.C7	AUGUSTUS	CDS	1490157	1490381	1	-	0	transcript_id "Ledus.C7G015000.t1"; gene_id "Ledus.C7G015000"
Ledus.C7	AUGUSTUS	exon	1490157	1490381	.	-	.	transcript_id "Ledus.C7G015000.t1"; gene_id "Ledus.C7G015000"
Ledus.C7	AUGUSTUS	intron	1490382	1490478	.	-	.	transcript_id "Ledus.C7G015000.t1"; gene_id "Ledus.C7G015000"
Ledus.C7	AUGUSTUS	CDS	1490479	1491900	1	-	0	transcript_id "Ledus.C7G015000.t1"; gene_id "Ledus.C7G015000"
Ledus.C7	AUGUSTUS	exon	1490479	1491900	.	-	.	transcript_id "Ledus.C7G015000.t1"; gene_id "Ledus.C7G015000"
Ledus.C7	AUGUSTUS	start_codon	1491898	1491900	.	-	0	transcript_id "Ledus.C7G015000.t1"; gene_id "Ledus.C7G015000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8927.t1 is derived from g9957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3175439	3175690	.	+	.	Ledus.S3G040400
Ledus.S3	AUGUSTUS	transcript	3175439	3175690	.	+	.	transcript_id "Ledus.S3G040400.t1"; gene_id "Ledus.S3G040400"
Ledus.S3	AUGUSTUS	start_codon	3175439	3175441	.	+	0	transcript_id "Ledus.S3G040400.t1"; gene_id "Ledus.S3G040400"
Ledus.S3	AUGUSTUS	CDS	3175439	3175690	0.35	+	0	transcript_id "Ledus.S3G040400.t1"; gene_id "Ledus.S3G040400"
Ledus.S3	AUGUSTUS	exon	3175439	3175690	.	+	.	transcript_id "Ledus.S3G040400.t1"; gene_id "Ledus.S3G040400"
Ledus.S3	AUGUSTUS	stop_codon	3175691	3175693	.	+	0	transcript_id "Ledus.S3G040400.t1"; gene_id "Ledus.S3G040400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7969.t1 is derived from g12640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8282275	8284288	.	-	.	Ledus.S5G074700
Ledus.S5	AUGUSTUS	transcript	8282275	8284288	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	stop_codon	8282272	8282274	.	-	0	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	CDS	8282275	8282448	1	-	0	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	exon	8282275	8282448	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	intron	8282449	8282535	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	CDS	8282536	8282604	1	-	0	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	exon	8282536	8282604	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	intron	8282605	8282889	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	CDS	8282890	8283066	1	-	0	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	exon	8282890	8283066	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	intron	8283067	8283266	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	CDS	8283267	8283344	1	-	0	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	exon	8283267	8283344	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	intron	8283345	8283438	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	CDS	8283439	8283534	1	-	0	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	exon	8283439	8283534	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	intron	8283535	8283643	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	CDS	8283644	8283786	0.66	-	2	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	exon	8283644	8283786	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	intron	8283787	8283951	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	CDS	8283952	8283978	0.7	-	2	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	exon	8283952	8283978	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	intron	8283979	8284170	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	CDS	8284171	8284288	0.58	-	0	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	exon	8284171	8284288	.	-	.	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
Ledus.S5	AUGUSTUS	start_codon	8284286	8284288	.	-	0	transcript_id "Ledus.S5G074700.t1"; gene_id "Ledus.S5G074700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6719.t1 is derived from g4162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33518607	33520673	.	-	.	Ledus.S1G414000
Ledus.S1	AUGUSTUS	transcript	33518607	33520673	.	-	.	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	stop_codon	33518604	33518606	.	-	0	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	CDS	33518607	33519148	1	-	2	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	exon	33518607	33519148	.	-	.	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	intron	33519149	33519221	.	-	.	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	CDS	33519222	33519819	1	-	0	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	exon	33519222	33519819	.	-	.	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	intron	33519820	33519909	.	-	.	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	CDS	33519910	33520108	1	-	1	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	exon	33519910	33520108	.	-	.	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	intron	33520109	33520202	.	-	.	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	CDS	33520203	33520304	1	-	1	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	exon	33520203	33520304	.	-	.	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	intron	33520305	33520377	.	-	.	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	CDS	33520378	33520673	1	-	0	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	exon	33520378	33520673	.	-	.	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
Ledus.S1	AUGUSTUS	start_codon	33520671	33520673	.	-	0	transcript_id "Ledus.S1G414000.t1"; gene_id "Ledus.S1G414000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8116.t1 is derived from g12787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9194018	9199084	.	-	.	Ledus.S5G089400
Ledus.S5	AUGUSTUS	transcript	9194018	9199084	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	stop_codon	9194015	9194017	.	-	0	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9194018	9194194	0.7	-	0	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9194018	9194194	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9194195	9194350	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9194351	9194494	1	-	0	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9194351	9194494	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9194495	9194609	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9194610	9194754	1	-	1	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9194610	9194754	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9194755	9194889	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9194890	9195035	1	-	0	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9194890	9195035	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9195036	9195114	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9195115	9195206	1	-	2	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9195115	9195206	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9195207	9195302	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9195303	9195354	0.84	-	0	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9195303	9195354	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9195355	9195484	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9195485	9195768	1	-	2	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9195485	9195768	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9195769	9195912	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9195913	9196095	1	-	2	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9195913	9196095	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9196096	9196262	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9196263	9196334	1	-	2	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9196263	9196334	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9196335	9196487	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9196488	9196597	1	-	1	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9196488	9196597	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9196598	9196696	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9196697	9196750	1	-	1	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9196697	9196750	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9196751	9196916	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9196917	9196985	1	-	1	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9196917	9196985	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9196986	9197057	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9197058	9197129	1	-	1	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9197058	9197129	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9197130	9197248	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9197249	9197320	0.97	-	1	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9197249	9197320	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9197321	9197628	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9197629	9197700	1	-	1	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9197629	9197700	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9197701	9197791	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9197792	9197863	0.79	-	1	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9197792	9197863	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9197864	9197947	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9197948	9198019	0.99	-	1	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9197948	9198019	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9198020	9198123	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9198124	9198195	1	-	1	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9198124	9198195	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9198196	9198328	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9198329	9198505	1	-	1	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9198329	9198505	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9198506	9198594	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9198595	9198718	1	-	2	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9198595	9198718	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9198719	9198814	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9198815	9198892	1	-	2	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9198815	9198892	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	intron	9198893	9198990	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	CDS	9198991	9199084	0.85	-	0	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	exon	9198991	9199084	.	-	.	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
Ledus.S5	AUGUSTUS	start_codon	9199082	9199084	.	-	0	transcript_id "Ledus.S5G089400.t1"; gene_id "Ledus.S5G089400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg62.t1 is derived from g9475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	183029	183413	.	+	.	Ledus.C8G002200
Ledus.C8	AUGUSTUS	transcript	183029	183413	.	+	.	transcript_id "Ledus.C8G002200.t1"; gene_id "Ledus.C8G002200"
Ledus.C8	AUGUSTUS	start_codon	183029	183031	.	+	0	transcript_id "Ledus.C8G002200.t1"; gene_id "Ledus.C8G002200"
Ledus.C8	AUGUSTUS	CDS	183029	183092	0.55	+	0	transcript_id "Ledus.C8G002200.t1"; gene_id "Ledus.C8G002200"
Ledus.C8	AUGUSTUS	exon	183029	183092	.	+	.	transcript_id "Ledus.C8G002200.t1"; gene_id "Ledus.C8G002200"
Ledus.C8	AUGUSTUS	intron	183093	183195	.	+	.	transcript_id "Ledus.C8G002200.t1"; gene_id "Ledus.C8G002200"
Ledus.C8	AUGUSTUS	CDS	183196	183413	0.54	+	2	transcript_id "Ledus.C8G002200.t1"; gene_id "Ledus.C8G002200"
Ledus.C8	AUGUSTUS	exon	183196	183413	.	+	.	transcript_id "Ledus.C8G002200.t1"; gene_id "Ledus.C8G002200"
Ledus.C8	AUGUSTUS	stop_codon	183414	183416	.	+	0	transcript_id "Ledus.C8G002200.t1"; gene_id "Ledus.C8G002200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3927.t1 is derived from g1363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13582401	13584266	.	-	.	Ledus.S1G134800
Ledus.S1	AUGUSTUS	transcript	13582401	13584266	.	-	.	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	stop_codon	13582398	13582400	.	-	0	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	CDS	13582401	13582585	0.96	-	2	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	exon	13582401	13582585	.	-	.	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	intron	13582586	13582680	.	-	.	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	CDS	13582681	13583185	1	-	0	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	exon	13582681	13583185	.	-	.	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	intron	13583186	13583278	.	-	.	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	CDS	13583279	13583799	1	-	2	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	exon	13583279	13583799	.	-	.	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	intron	13583800	13583877	.	-	.	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	CDS	13583878	13583982	1	-	2	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	exon	13583878	13583982	.	-	.	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	intron	13583983	13584052	.	-	.	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	CDS	13584053	13584266	0.85	-	0	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	exon	13584053	13584266	.	-	.	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
Ledus.S1	AUGUSTUS	start_codon	13584264	13584266	.	-	0	transcript_id "Ledus.S1G134800.t1"; gene_id "Ledus.S1G134800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1403.t1 is derived from g8264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9900329	9901531	.	-	.	Ledus.S2G128500
Ledus.S2	AUGUSTUS	transcript	9900329	9901531	.	-	.	transcript_id "Ledus.S2G128500.t1"; gene_id "Ledus.S2G128500"
Ledus.S2	AUGUSTUS	stop_codon	9900326	9900328	.	-	0	transcript_id "Ledus.S2G128500.t1"; gene_id "Ledus.S2G128500"
Ledus.S2	AUGUSTUS	CDS	9900329	9901531	1	-	0	transcript_id "Ledus.S2G128500.t1"; gene_id "Ledus.S2G128500"
Ledus.S2	AUGUSTUS	exon	9900329	9901531	.	-	.	transcript_id "Ledus.S2G128500.t1"; gene_id "Ledus.S2G128500"
Ledus.S2	AUGUSTUS	start_codon	9901529	9901531	.	-	0	transcript_id "Ledus.S2G128500.t1"; gene_id "Ledus.S2G128500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10264.t1 is derived from g11294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13895033	13902525	.	+	.	Ledus.S3G174100
Ledus.S3	AUGUSTUS	transcript	13895033	13902525	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	start_codon	13895033	13895035	.	+	0	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	CDS	13895033	13895203	0.36	+	0	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	exon	13895033	13895203	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	intron	13895204	13895441	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	CDS	13895442	13896188	0.55	+	0	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	exon	13895442	13896188	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	intron	13896189	13896323	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	CDS	13896324	13896388	1	+	0	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	exon	13896324	13896388	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	intron	13896389	13896479	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	CDS	13896480	13896603	1	+	1	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	exon	13896480	13896603	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	intron	13896604	13896686	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	CDS	13896687	13896740	1	+	0	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	exon	13896687	13896740	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	intron	13896741	13896970	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	CDS	13896971	13897120	1	+	0	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	exon	13896971	13897120	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	intron	13897121	13897208	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	CDS	13897209	13899815	0.98	+	0	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	exon	13897209	13899815	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	intron	13899816	13899891	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	CDS	13899892	13901676	0.93	+	0	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	exon	13899892	13901676	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	intron	13901677	13901765	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	CDS	13901766	13901854	0.97	+	0	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	exon	13901766	13901854	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	intron	13901855	13901944	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	CDS	13901945	13902048	1	+	1	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	exon	13901945	13902048	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	intron	13902049	13902136	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	CDS	13902137	13902235	1	+	2	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	exon	13902137	13902235	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	intron	13902236	13902397	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	CDS	13902398	13902525	0.84	+	2	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	exon	13902398	13902525	.	+	.	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
Ledus.S3	AUGUSTUS	stop_codon	13902526	13902528	.	+	0	transcript_id "Ledus.S3G174100.t1"; gene_id "Ledus.S3G174100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9107.t1 is derived from g10137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4633490	4638934	.	+	.	Ledus.S3G058400
Ledus.S3	AUGUSTUS	transcript	4633490	4638934	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	start_codon	4633490	4633492	.	+	0	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4633490	4633643	1	+	0	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4633490	4633643	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4633644	4633808	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4633809	4633936	0.99	+	2	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4633809	4633936	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4633937	4634047	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4634048	4635219	0.63	+	0	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4634048	4635219	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4635220	4635308	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4635309	4635552	1	+	1	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4635309	4635552	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4635553	4635667	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4635668	4635816	1	+	0	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4635668	4635816	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4635817	4635910	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4635911	4636033	1	+	1	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4635911	4636033	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4636034	4636123	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4636124	4636360	0.91	+	1	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4636124	4636360	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4636361	4636448	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4636449	4636530	1	+	1	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4636449	4636530	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4636531	4636607	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4636608	4636658	1	+	0	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4636608	4636658	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4636659	4636744	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4636745	4636820	1	+	0	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4636745	4636820	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4636821	4636916	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4636917	4637028	1	+	2	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4636917	4637028	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4637029	4637116	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4637117	4637188	1	+	1	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4637117	4637188	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4637189	4637370	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4637371	4637566	1	+	1	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4637371	4637566	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4637567	4637655	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4637656	4637868	1	+	0	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4637656	4637868	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4637869	4637940	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4637941	4638098	1	+	0	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4637941	4638098	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4638099	4638242	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4638243	4638305	1	+	1	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4638243	4638305	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4638306	4638388	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4638389	4638428	0.76	+	1	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4638389	4638428	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4638429	4638570	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4638571	4638587	0.66	+	0	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4638571	4638587	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4638588	4638664	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4638665	4638832	0.85	+	1	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4638665	4638832	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4638833	4638906	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4638907	4638934	0.85	+	1	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4638907	4638934	.	+	.	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	stop_codon	4638935	4638937	.	+	0	transcript_id "Ledus.S3G058400.t1"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	transcript	4633490	4638934	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	start_codon	4633490	4633492	.	+	0	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4633490	4633643	1	+	0	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4633490	4633643	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4633644	4633808	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4633809	4633936	1	+	2	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4633809	4633936	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4633937	4634047	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4634048	4635219	0.62	+	0	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4634048	4635219	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4635220	4635308	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4635309	4635552	0.98	+	1	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4635309	4635552	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4635553	4635667	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4635668	4635816	1	+	0	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4635668	4635816	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4635817	4635910	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4635911	4636033	1	+	1	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4635911	4636033	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4636034	4636123	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4636124	4636153	0.73	+	1	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4636124	4636153	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4636154	4636305	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4636306	4636356	0.97	+	1	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4636306	4636356	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4636357	4636448	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4636449	4636530	1	+	1	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4636449	4636530	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4636531	4636607	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4636608	4636658	1	+	0	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4636608	4636658	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4636659	4636744	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4636745	4636820	1	+	0	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4636745	4636820	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4636821	4636916	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4636917	4637028	1	+	2	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4636917	4637028	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4637029	4637116	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4637117	4637188	1	+	1	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4637117	4637188	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4637189	4637370	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4637371	4637566	1	+	1	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4637371	4637566	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4637567	4637655	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4637656	4637868	1	+	0	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4637656	4637868	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4637869	4637940	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4637941	4638098	1	+	0	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4637941	4638098	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4638099	4638242	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4638243	4638305	1	+	1	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4638243	4638305	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4638306	4638388	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4638389	4638428	0.75	+	1	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4638389	4638428	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4638429	4638570	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4638571	4638587	0.73	+	0	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4638571	4638587	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4638588	4638664	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4638665	4638832	0.9	+	1	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4638665	4638832	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	intron	4638833	4638906	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	CDS	4638907	4638934	0.9	+	1	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	exon	4638907	4638934	.	+	.	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
Ledus.S3	AUGUSTUS	stop_codon	4638935	4638937	.	+	0	transcript_id "Ledus.S3G058400.t2"; gene_id "Ledus.S3G058400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5675.t1 is derived from g3114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25764201	25765140	.	+	.	Ledus.S1G309600
Ledus.S1	AUGUSTUS	transcript	25764201	25765140	.	+	.	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	start_codon	25764201	25764203	.	+	0	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	CDS	25764201	25764407	0.87	+	0	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	exon	25764201	25764407	.	+	.	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	intron	25764408	25764493	.	+	.	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	CDS	25764494	25764700	1	+	0	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	exon	25764494	25764700	.	+	.	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	intron	25764701	25764797	.	+	.	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	CDS	25764798	25764911	1	+	0	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	exon	25764798	25764911	.	+	.	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	intron	25764912	25765017	.	+	.	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	CDS	25765018	25765140	0.94	+	0	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	exon	25765018	25765140	.	+	.	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
Ledus.S1	AUGUSTUS	stop_codon	25765141	25765143	.	+	0	transcript_id "Ledus.S1G309600.t1"; gene_id "Ledus.S1G309600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12705.t1 is derived from g6327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13997963	13998601	.	-	.	Ledus.S4G186100
Ledus.S4	AUGUSTUS	transcript	13997963	13998601	.	-	.	transcript_id "Ledus.S4G186100.t1"; gene_id "Ledus.S4G186100"
Ledus.S4	AUGUSTUS	stop_codon	13997960	13997962	.	-	0	transcript_id "Ledus.S4G186100.t1"; gene_id "Ledus.S4G186100"
Ledus.S4	AUGUSTUS	CDS	13997963	13998601	0.5	-	0	transcript_id "Ledus.S4G186100.t1"; gene_id "Ledus.S4G186100"
Ledus.S4	AUGUSTUS	exon	13997963	13998601	.	-	.	transcript_id "Ledus.S4G186100.t1"; gene_id "Ledus.S4G186100"
Ledus.S4	AUGUSTUS	start_codon	13998599	13998601	.	-	0	transcript_id "Ledus.S4G186100.t1"; gene_id "Ledus.S4G186100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6903.t1 is derived from g4347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35086191	35091279	.	-	.	Ledus.S1G432400
Ledus.S1	AUGUSTUS	transcript	35086191	35091279	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	stop_codon	35086188	35086190	.	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35086191	35086463	0.99	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35086191	35086463	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35086464	35086535	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35086536	35086622	1	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35086536	35086622	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35086623	35086729	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35086730	35086819	0.99	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35086730	35086819	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35086820	35086950	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35086951	35087086	1	-	1	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35086951	35087086	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35087087	35087216	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35087217	35087377	1	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35087217	35087377	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35087378	35087505	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35087506	35087734	1	-	1	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35087506	35087734	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35087735	35087941	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35087942	35088024	1	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35087942	35088024	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35088025	35088113	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35088114	35088308	1	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35088114	35088308	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35088309	35088478	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35088479	35088577	1	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35088479	35088577	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35088578	35088793	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35088794	35088907	0.98	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35088794	35088907	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35088908	35089019	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35089020	35089107	0.99	-	1	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35089020	35089107	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35089108	35089189	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35089190	35089410	0.98	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35089190	35089410	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35089411	35089552	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35089553	35089605	1	-	2	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35089553	35089605	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35089606	35089742	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35089743	35090061	0.92	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35089743	35090061	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35090062	35090258	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35090259	35090347	1	-	2	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35090259	35090347	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35090348	35090467	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35090468	35090833	0.5	-	2	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35090468	35090833	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35090834	35090947	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35090948	35091018	1	-	1	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35090948	35091018	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	intron	35091019	35091100	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	CDS	35091101	35091279	0.67	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	exon	35091101	35091279	.	-	.	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
Ledus.S1	AUGUSTUS	start_codon	35091277	35091279	.	-	0	transcript_id "Ledus.S1G432400.t1"; gene_id "Ledus.S1G432400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7718.t1 is derived from g12389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5454589	5455533	.	-	.	Ledus.S5G049600
Ledus.S5	AUGUSTUS	transcript	5454589	5455533	.	-	.	transcript_id "Ledus.S5G049600.t1"; gene_id "Ledus.S5G049600"
Ledus.S5	AUGUSTUS	stop_codon	5454586	5454588	.	-	0	transcript_id "Ledus.S5G049600.t1"; gene_id "Ledus.S5G049600"
Ledus.S5	AUGUSTUS	CDS	5454589	5455533	1	-	0	transcript_id "Ledus.S5G049600.t1"; gene_id "Ledus.S5G049600"
Ledus.S5	AUGUSTUS	exon	5454589	5455533	.	-	.	transcript_id "Ledus.S5G049600.t1"; gene_id "Ledus.S5G049600"
Ledus.S5	AUGUSTUS	start_codon	5455531	5455533	.	-	0	transcript_id "Ledus.S5G049600.t1"; gene_id "Ledus.S5G049600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4591.t1 is derived from g2028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17961201	17961574	.	+	.	Ledus.S1G201200
Ledus.S1	AUGUSTUS	transcript	17961201	17961574	.	+	.	transcript_id "Ledus.S1G201200.t1"; gene_id "Ledus.S1G201200"
Ledus.S1	AUGUSTUS	start_codon	17961201	17961203	.	+	0	transcript_id "Ledus.S1G201200.t1"; gene_id "Ledus.S1G201200"
Ledus.S1	AUGUSTUS	CDS	17961201	17961416	0.59	+	0	transcript_id "Ledus.S1G201200.t1"; gene_id "Ledus.S1G201200"
Ledus.S1	AUGUSTUS	exon	17961201	17961416	.	+	.	transcript_id "Ledus.S1G201200.t1"; gene_id "Ledus.S1G201200"
Ledus.S1	AUGUSTUS	intron	17961417	17961517	.	+	.	transcript_id "Ledus.S1G201200.t1"; gene_id "Ledus.S1G201200"
Ledus.S1	AUGUSTUS	CDS	17961518	17961574	0.98	+	0	transcript_id "Ledus.S1G201200.t1"; gene_id "Ledus.S1G201200"
Ledus.S1	AUGUSTUS	exon	17961518	17961574	.	+	.	transcript_id "Ledus.S1G201200.t1"; gene_id "Ledus.S1G201200"
Ledus.S1	AUGUSTUS	stop_codon	17961575	17961577	.	+	0	transcript_id "Ledus.S1G201200.t1"; gene_id "Ledus.S1G201200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11331.t1 is derived from g4949.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3644792	3645073	.	+	.	Ledus.S4G048700
Ledus.S4	AUGUSTUS	transcript	3644792	3645073	.	+	.	transcript_id "Ledus.S4G048700.t1"; gene_id "Ledus.S4G048700"
Ledus.S4	AUGUSTUS	start_codon	3644792	3644794	.	+	0	transcript_id "Ledus.S4G048700.t1"; gene_id "Ledus.S4G048700"
Ledus.S4	AUGUSTUS	CDS	3644792	3645073	0.33	+	0	transcript_id "Ledus.S4G048700.t1"; gene_id "Ledus.S4G048700"
Ledus.S4	AUGUSTUS	exon	3644792	3645073	.	+	.	transcript_id "Ledus.S4G048700.t1"; gene_id "Ledus.S4G048700"
Ledus.S4	AUGUSTUS	stop_codon	3645074	3645076	.	+	0	transcript_id "Ledus.S4G048700.t1"; gene_id "Ledus.S4G048700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9680.t1 is derived from g10710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8987533	8989443	.	+	.	Ledus.S3G115700
Ledus.S3	AUGUSTUS	transcript	8987533	8989443	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	start_codon	8987533	8987535	.	+	0	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	CDS	8987533	8987770	0.43	+	0	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	exon	8987533	8987770	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	intron	8987771	8987852	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	CDS	8987853	8987963	1	+	2	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	exon	8987853	8987963	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	intron	8987964	8988054	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	CDS	8988055	8988275	1	+	2	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	exon	8988055	8988275	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	intron	8988276	8988486	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	CDS	8988487	8988645	1	+	0	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	exon	8988487	8988645	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	intron	8988646	8988797	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	CDS	8988798	8988828	1	+	0	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	exon	8988798	8988828	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	intron	8988829	8988961	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	CDS	8988962	8989097	1	+	2	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	exon	8988962	8989097	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	intron	8989098	8989198	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	CDS	8989199	8989282	0.92	+	1	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	exon	8989199	8989282	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	intron	8989283	8989379	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	CDS	8989380	8989443	1	+	1	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	exon	8989380	8989443	.	+	.	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
Ledus.S3	AUGUSTUS	stop_codon	8989444	8989446	.	+	0	transcript_id "Ledus.S3G115700.t1"; gene_id "Ledus.S3G115700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1051.t1 is derived from g7912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7009009	7011265	.	+	.	Ledus.S2G093300
Ledus.S2	AUGUSTUS	transcript	7009009	7011265	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	start_codon	7009009	7009011	.	+	0	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	CDS	7009009	7009128	0.19	+	0	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	exon	7009009	7009128	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	intron	7009129	7009221	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	CDS	7009222	7009431	1	+	0	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	exon	7009222	7009431	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	intron	7009432	7009571	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	CDS	7009572	7009805	0.99	+	0	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	exon	7009572	7009805	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	intron	7009806	7009901	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	CDS	7009902	7010152	1	+	0	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	exon	7009902	7010152	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	intron	7010153	7010230	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	CDS	7010231	7010404	0.75	+	1	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	exon	7010231	7010404	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	intron	7010405	7010510	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	CDS	7010511	7010519	0.63	+	1	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	exon	7010511	7010519	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	intron	7010520	7010752	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	CDS	7010753	7010815	0.92	+	1	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	exon	7010753	7010815	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	intron	7010816	7010893	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	CDS	7010894	7010969	0.7	+	1	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	exon	7010894	7010969	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	intron	7010970	7011043	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	CDS	7011044	7011265	0.45	+	0	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	exon	7011044	7011265	.	+	.	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
Ledus.S2	AUGUSTUS	stop_codon	7011266	7011268	.	+	0	transcript_id "Ledus.S2G093300.t1"; gene_id "Ledus.S2G093300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9685.t1 is derived from g10715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8997881	8999002	.	+	.	Ledus.S3G116200
Ledus.S3	AUGUSTUS	transcript	8997881	8999002	.	+	.	transcript_id "Ledus.S3G116200.t1"; gene_id "Ledus.S3G116200"
Ledus.S3	AUGUSTUS	start_codon	8997881	8997883	.	+	0	transcript_id "Ledus.S3G116200.t1"; gene_id "Ledus.S3G116200"
Ledus.S3	AUGUSTUS	CDS	8997881	8999002	0.99	+	0	transcript_id "Ledus.S3G116200.t1"; gene_id "Ledus.S3G116200"
Ledus.S3	AUGUSTUS	exon	8997881	8999002	.	+	.	transcript_id "Ledus.S3G116200.t1"; gene_id "Ledus.S3G116200"
Ledus.S3	AUGUSTUS	stop_codon	8999003	8999005	.	+	0	transcript_id "Ledus.S3G116200.t1"; gene_id "Ledus.S3G116200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5753.t1 is derived from g3193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26489395	26492426	.	+	.	Ledus.S1G317400
Ledus.S1	AUGUSTUS	transcript	26489395	26492426	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	start_codon	26489395	26489397	.	+	0	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26489395	26489564	0.88	+	0	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26489395	26489564	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26489565	26489659	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26489660	26489777	1	+	1	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26489660	26489777	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26489778	26489851	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26489852	26490034	1	+	0	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26489852	26490034	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26490035	26490128	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26490129	26490257	1	+	0	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26490129	26490257	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26490258	26490336	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26490337	26490510	1	+	0	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26490337	26490510	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26490511	26490612	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26490613	26490807	0.82	+	0	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26490613	26490807	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26490808	26490884	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26490885	26490985	1	+	0	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26490885	26490985	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26490986	26491102	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26491103	26491192	1	+	1	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26491103	26491192	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26491193	26491371	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26491372	26491444	1	+	1	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26491372	26491444	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26491445	26491563	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26491564	26491592	1	+	0	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26491564	26491592	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26491593	26491690	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26491691	26491814	1	+	1	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26491691	26491814	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26491815	26491924	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26491925	26492035	1	+	0	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26491925	26492035	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26492036	26492117	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26492118	26492218	1	+	0	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26492118	26492218	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	intron	26492219	26492311	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	CDS	26492312	26492426	1	+	1	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	exon	26492312	26492426	.	+	.	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
Ledus.S1	AUGUSTUS	stop_codon	26492427	26492429	.	+	0	transcript_id "Ledus.S1G317400.t1"; gene_id "Ledus.S1G317400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg740.t1 is derived from g7601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4690303	4692497	.	+	.	Ledus.S2G062200
Ledus.S2	AUGUSTUS	transcript	4690303	4692497	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	start_codon	4690303	4690305	.	+	0	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	CDS	4690303	4690572	1	+	0	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	exon	4690303	4690572	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	intron	4690573	4690661	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	CDS	4690662	4690726	1	+	0	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	exon	4690662	4690726	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	intron	4690727	4690811	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	CDS	4690812	4691013	1	+	1	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	exon	4690812	4691013	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	intron	4691014	4691095	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	CDS	4691096	4691176	1	+	0	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	exon	4691096	4691176	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	intron	4691177	4691274	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	CDS	4691275	4691400	1	+	0	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	exon	4691275	4691400	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	intron	4691401	4691548	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	CDS	4691549	4691628	1	+	0	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	exon	4691549	4691628	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	intron	4691629	4691721	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	CDS	4691722	4691837	1	+	1	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	exon	4691722	4691837	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	intron	4691838	4691925	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	CDS	4691926	4692046	1	+	2	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	exon	4691926	4692046	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	intron	4692047	4692135	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	CDS	4692136	4692191	1	+	1	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	exon	4692136	4692191	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	intron	4692192	4692393	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	CDS	4692394	4692497	0.78	+	2	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	exon	4692394	4692497	.	+	.	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
Ledus.S2	AUGUSTUS	stop_codon	4692498	4692500	.	+	0	transcript_id "Ledus.S2G062200.t1"; gene_id "Ledus.S2G062200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8341.t1 is derived from g13013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10904719	10907532	.	+	.	Ledus.S5G111900
Ledus.S5	AUGUSTUS	transcript	10905868	10907532	.	+	.	transcript_id "Ledus.S5G111900.t1"; gene_id "Ledus.S5G111900"
Ledus.S5	AUGUSTUS	start_codon	10905868	10905870	.	+	0	transcript_id "Ledus.S5G111900.t1"; gene_id "Ledus.S5G111900"
Ledus.S5	AUGUSTUS	CDS	10905868	10907532	0.89	+	0	transcript_id "Ledus.S5G111900.t1"; gene_id "Ledus.S5G111900"
Ledus.S5	AUGUSTUS	exon	10905868	10907532	.	+	.	transcript_id "Ledus.S5G111900.t1"; gene_id "Ledus.S5G111900"
Ledus.S5	AUGUSTUS	stop_codon	10907533	10907535	.	+	0	transcript_id "Ledus.S5G111900.t1"; gene_id "Ledus.S5G111900"
Ledus.S5	AUGUSTUS	transcript	10904719	10907532	.	+	.	transcript_id "Ledus.S5G111900.t2"; gene_id "Ledus.S5G111900"
Ledus.S5	AUGUSTUS	start_codon	10904719	10904721	.	+	0	transcript_id "Ledus.S5G111900.t2"; gene_id "Ledus.S5G111900"
Ledus.S5	AUGUSTUS	CDS	10904719	10907532	0.79	+	0	transcript_id "Ledus.S5G111900.t2"; gene_id "Ledus.S5G111900"
Ledus.S5	AUGUSTUS	exon	10904719	10907532	.	+	.	transcript_id "Ledus.S5G111900.t2"; gene_id "Ledus.S5G111900"
Ledus.S5	AUGUSTUS	stop_codon	10907533	10907535	.	+	0	transcript_id "Ledus.S5G111900.t2"; gene_id "Ledus.S5G111900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11990.t1 is derived from g5609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8353628	8354512	.	+	.	Ledus.S4G114600
Ledus.S4	AUGUSTUS	transcript	8353628	8354512	.	+	.	transcript_id "Ledus.S4G114600.t1"; gene_id "Ledus.S4G114600"
Ledus.S4	AUGUSTUS	start_codon	8353628	8353630	.	+	0	transcript_id "Ledus.S4G114600.t1"; gene_id "Ledus.S4G114600"
Ledus.S4	AUGUSTUS	CDS	8353628	8353773	1	+	0	transcript_id "Ledus.S4G114600.t1"; gene_id "Ledus.S4G114600"
Ledus.S4	AUGUSTUS	exon	8353628	8353773	.	+	.	transcript_id "Ledus.S4G114600.t1"; gene_id "Ledus.S4G114600"
Ledus.S4	AUGUSTUS	intron	8353774	8353863	.	+	.	transcript_id "Ledus.S4G114600.t1"; gene_id "Ledus.S4G114600"
Ledus.S4	AUGUSTUS	CDS	8353864	8354512	1	+	1	transcript_id "Ledus.S4G114600.t1"; gene_id "Ledus.S4G114600"
Ledus.S4	AUGUSTUS	exon	8353864	8354512	.	+	.	transcript_id "Ledus.S4G114600.t1"; gene_id "Ledus.S4G114600"
Ledus.S4	AUGUSTUS	stop_codon	8354513	8354515	.	+	0	transcript_id "Ledus.S4G114600.t1"; gene_id "Ledus.S4G114600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5969.t1 is derived from g3412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28098440	28101247	.	+	.	Ledus.S1G339000
Ledus.S1	AUGUSTUS	transcript	28098440	28101247	.	+	.	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	start_codon	28098440	28098442	.	+	0	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	CDS	28098440	28098509	0.49	+	0	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	exon	28098440	28098509	.	+	.	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	intron	28098510	28098614	.	+	.	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	CDS	28098615	28098991	0.54	+	2	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	exon	28098615	28098991	.	+	.	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	intron	28098992	28099084	.	+	.	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	CDS	28099085	28100694	0.9	+	0	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	exon	28099085	28100694	.	+	.	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	intron	28100695	28101024	.	+	.	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	CDS	28101025	28101247	0.61	+	1	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	exon	28101025	28101247	.	+	.	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
Ledus.S1	AUGUSTUS	stop_codon	28101248	28101250	.	+	0	transcript_id "Ledus.S1G339000.t1"; gene_id "Ledus.S1G339000"
# This transcript jg8342.t2 is derived from g13014.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8343.t1 is derived from g13015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10909568	10910770	.	+	.	Ledus.S5G112100
Ledus.S5	AUGUSTUS	transcript	10909568	10910770	.	+	.	transcript_id "Ledus.S5G112100.t1"; gene_id "Ledus.S5G112100"
Ledus.S5	AUGUSTUS	start_codon	10909568	10909570	.	+	0	transcript_id "Ledus.S5G112100.t1"; gene_id "Ledus.S5G112100"
Ledus.S5	AUGUSTUS	CDS	10909568	10909581	0.95	+	0	transcript_id "Ledus.S5G112100.t1"; gene_id "Ledus.S5G112100"
Ledus.S5	AUGUSTUS	exon	10909568	10909581	.	+	.	transcript_id "Ledus.S5G112100.t1"; gene_id "Ledus.S5G112100"
Ledus.S5	AUGUSTUS	intron	10909582	10909935	.	+	.	transcript_id "Ledus.S5G112100.t1"; gene_id "Ledus.S5G112100"
Ledus.S5	AUGUSTUS	CDS	10909936	10910770	0.97	+	1	transcript_id "Ledus.S5G112100.t1"; gene_id "Ledus.S5G112100"
Ledus.S5	AUGUSTUS	exon	10909936	10910770	.	+	.	transcript_id "Ledus.S5G112100.t1"; gene_id "Ledus.S5G112100"
Ledus.S5	AUGUSTUS	stop_codon	10910771	10910773	.	+	0	transcript_id "Ledus.S5G112100.t1"; gene_id "Ledus.S5G112100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4203.t1 is derived from g1639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15354196	15361305	.	+	.	Ledus.S1G162400
Ledus.S1	AUGUSTUS	transcript	15354196	15361305	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	start_codon	15354196	15354198	.	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15354196	15354403	0.74	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15354196	15354403	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15354404	15354668	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15354669	15354832	0.99	+	2	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15354669	15354832	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15354833	15354933	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15354934	15355032	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15354934	15355032	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15355033	15355223	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15355224	15355274	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15355224	15355274	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15355275	15355367	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15355368	15355484	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15355368	15355484	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15355485	15355646	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15355647	15355703	0.96	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15355647	15355703	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15355704	15355810	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15355811	15355930	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15355811	15355930	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15355931	15356171	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15356172	15356234	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15356172	15356234	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15356235	15356443	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15356444	15356522	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15356444	15356522	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15356523	15357161	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15357162	15357271	0.98	+	2	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15357162	15357271	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15357272	15357326	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15357327	15357434	0.9	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15357327	15357434	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15357435	15357520	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15357521	15357588	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15357521	15357588	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15357589	15357672	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15357673	15357775	1	+	1	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15357673	15357775	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15357776	15357845	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15357846	15358048	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15357846	15358048	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15358049	15358136	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15358137	15358233	1	+	1	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15358137	15358233	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15358234	15358361	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15358362	15358433	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15358362	15358433	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15358434	15358562	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15358563	15358639	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15358563	15358639	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15358640	15358737	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15358738	15358854	1	+	1	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15358738	15358854	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15358855	15358969	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15358970	15359054	1	+	1	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15358970	15359054	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15359055	15359188	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15359189	15359356	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15359189	15359356	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15359357	15359448	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15359449	15359559	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15359449	15359559	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15359560	15359772	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15359773	15359859	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15359773	15359859	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15359860	15360122	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15360123	15360250	1	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15360123	15360250	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15360251	15360389	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15360390	15360472	1	+	1	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15360390	15360472	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15360473	15360550	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15360551	15360656	1	+	2	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15360551	15360656	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15360657	15360745	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15360746	15360892	1	+	1	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15360746	15360892	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15360893	15360977	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15360978	15361098	1	+	1	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15360978	15361098	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	intron	15361099	15361197	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	CDS	15361198	15361305	0.99	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	exon	15361198	15361305	.	+	.	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
Ledus.S1	AUGUSTUS	stop_codon	15361306	15361308	.	+	0	transcript_id "Ledus.S1G162400.t1"; gene_id "Ledus.S1G162400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8407.t1 is derived from g13079.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11506666	11507880	.	+	.	Ledus.S5G118500
Ledus.S5	AUGUSTUS	transcript	11506666	11507880	.	+	.	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	start_codon	11506666	11506668	.	+	0	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	CDS	11506666	11506740	0.88	+	0	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	exon	11506666	11506740	.	+	.	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	intron	11506741	11507015	.	+	.	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	CDS	11507016	11507217	1	+	0	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	exon	11507016	11507217	.	+	.	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	intron	11507218	11507304	.	+	.	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	CDS	11507305	11507388	1	+	2	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	exon	11507305	11507388	.	+	.	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	intron	11507389	11507517	.	+	.	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	CDS	11507518	11507718	1	+	2	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	exon	11507518	11507718	.	+	.	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	intron	11507719	11507794	.	+	.	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	CDS	11507795	11507880	1	+	2	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	exon	11507795	11507880	.	+	.	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	stop_codon	11507881	11507883	.	+	0	transcript_id "Ledus.S5G118500.t1"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	transcript	11506666	11507880	.	+	.	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	start_codon	11506666	11506668	.	+	0	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	CDS	11506666	11506740	0.68	+	0	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	exon	11506666	11506740	.	+	.	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	intron	11506741	11506964	.	+	.	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	CDS	11506965	11507217	0.75	+	0	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	exon	11506965	11507217	.	+	.	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	intron	11507218	11507304	.	+	.	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	CDS	11507305	11507388	1	+	2	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	exon	11507305	11507388	.	+	.	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	intron	11507389	11507517	.	+	.	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	CDS	11507518	11507718	1	+	2	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	exon	11507518	11507718	.	+	.	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	intron	11507719	11507794	.	+	.	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	CDS	11507795	11507880	1	+	2	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	exon	11507795	11507880	.	+	.	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
Ledus.S5	AUGUSTUS	stop_codon	11507881	11507883	.	+	0	transcript_id "Ledus.S5G118500.t2"; gene_id "Ledus.S5G118500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10729.t1 is derived from g11759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17397440	17398962	.	+	.	Ledus.S3G220600
Ledus.S3	AUGUSTUS	transcript	17397440	17398962	.	+	.	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	start_codon	17397440	17397442	.	+	0	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	CDS	17397440	17397766	0.99	+	0	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	exon	17397440	17397766	.	+	.	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	intron	17397767	17397944	.	+	.	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	CDS	17397945	17398118	1	+	0	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	exon	17397945	17398118	.	+	.	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	intron	17398119	17398219	.	+	.	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	CDS	17398220	17398363	1	+	0	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	exon	17398220	17398363	.	+	.	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	intron	17398364	17398434	.	+	.	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	CDS	17398435	17398563	1	+	0	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	exon	17398435	17398563	.	+	.	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	intron	17398564	17398688	.	+	.	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	CDS	17398689	17398755	1	+	0	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	exon	17398689	17398755	.	+	.	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	intron	17398756	17398840	.	+	.	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	CDS	17398841	17398962	0.97	+	2	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	exon	17398841	17398962	.	+	.	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
Ledus.S3	AUGUSTUS	stop_codon	17398963	17398965	.	+	0	transcript_id "Ledus.S3G220600.t1"; gene_id "Ledus.S3G220600"
# This transcript jg9601.t2 is derived from g10631.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9602.t1 is derived from g10632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8289921	8290471	.	+	.	Ledus.S3G107900
Ledus.S3	AUGUSTUS	transcript	8289921	8290471	.	+	.	transcript_id "Ledus.S3G107900.t1"; gene_id "Ledus.S3G107900"
Ledus.S3	AUGUSTUS	start_codon	8289921	8289923	.	+	0	transcript_id "Ledus.S3G107900.t1"; gene_id "Ledus.S3G107900"
Ledus.S3	AUGUSTUS	CDS	8289921	8290216	0.63	+	0	transcript_id "Ledus.S3G107900.t1"; gene_id "Ledus.S3G107900"
Ledus.S3	AUGUSTUS	exon	8289921	8290216	.	+	.	transcript_id "Ledus.S3G107900.t1"; gene_id "Ledus.S3G107900"
Ledus.S3	AUGUSTUS	intron	8290217	8290461	.	+	.	transcript_id "Ledus.S3G107900.t1"; gene_id "Ledus.S3G107900"
Ledus.S3	AUGUSTUS	CDS	8290462	8290471	1	+	1	transcript_id "Ledus.S3G107900.t1"; gene_id "Ledus.S3G107900"
Ledus.S3	AUGUSTUS	exon	8290462	8290471	.	+	.	transcript_id "Ledus.S3G107900.t1"; gene_id "Ledus.S3G107900"
Ledus.S3	AUGUSTUS	stop_codon	8290472	8290474	.	+	0	transcript_id "Ledus.S3G107900.t1"; gene_id "Ledus.S3G107900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg687.t1 is derived from g7548.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4186976	4188800	.	-	.	Ledus.S2G056900
Ledus.S2	AUGUSTUS	transcript	4186976	4188800	.	-	.	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	stop_codon	4186973	4186975	.	-	0	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	CDS	4186976	4187070	0.8	-	2	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	exon	4186976	4187070	.	-	.	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	intron	4187071	4187245	.	-	.	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	CDS	4187246	4187453	1	-	0	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	exon	4187246	4187453	.	-	.	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	intron	4187454	4187575	.	-	.	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	CDS	4187576	4187686	0.98	-	0	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	exon	4187576	4187686	.	-	.	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	intron	4187687	4187849	.	-	.	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	CDS	4187850	4187939	0.99	-	0	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	exon	4187850	4187939	.	-	.	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	intron	4187940	4188041	.	-	.	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	CDS	4188042	4188800	0.85	-	0	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	exon	4188042	4188800	.	-	.	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
Ledus.S2	AUGUSTUS	start_codon	4188798	4188800	.	-	0	transcript_id "Ledus.S2G056900.t1"; gene_id "Ledus.S2G056900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2468.t1 is derived from g9331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18346358	18351134	.	-	.	Ledus.S2G235000
Ledus.S2	AUGUSTUS	transcript	18346358	18351134	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	stop_codon	18346355	18346357	.	-	0	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	CDS	18346358	18347730	1	-	2	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	exon	18346358	18347730	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	intron	18347731	18347848	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	CDS	18347849	18348051	1	-	1	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	exon	18347849	18348051	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	intron	18348052	18348141	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	CDS	18348142	18348188	1	-	0	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	exon	18348142	18348188	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	intron	18348189	18348290	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	CDS	18348291	18348800	0.71	-	0	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	exon	18348291	18348800	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	intron	18348801	18348999	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	CDS	18349000	18349172	1	-	2	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	exon	18349000	18349172	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	intron	18349173	18349315	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	CDS	18349316	18349461	1	-	1	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	exon	18349316	18349461	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	intron	18349462	18349557	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	CDS	18349558	18349702	1	-	2	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	exon	18349558	18349702	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	intron	18349703	18349886	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	CDS	18349887	18349995	1	-	0	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	exon	18349887	18349995	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	intron	18349996	18350165	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	CDS	18350166	18350404	1	-	2	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	exon	18350166	18350404	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	intron	18350405	18350485	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	CDS	18350486	18350687	0.99	-	0	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	exon	18350486	18350687	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	intron	18350688	18350794	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	CDS	18350795	18350931	1	-	2	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	exon	18350795	18350931	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	intron	18350932	18351019	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	CDS	18351020	18351134	0.73	-	0	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	exon	18351020	18351134	.	-	.	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
Ledus.S2	AUGUSTUS	start_codon	18351132	18351134	.	-	0	transcript_id "Ledus.S2G235000.t1"; gene_id "Ledus.S2G235000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4549.t1 is derived from g1986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17620007	17621173	.	-	.	Ledus.S1G197000
Ledus.S1	AUGUSTUS	transcript	17620007	17621173	.	-	.	transcript_id "Ledus.S1G197000.t1"; gene_id "Ledus.S1G197000"
Ledus.S1	AUGUSTUS	stop_codon	17620004	17620006	.	-	0	transcript_id "Ledus.S1G197000.t1"; gene_id "Ledus.S1G197000"
Ledus.S1	AUGUSTUS	CDS	17620007	17620837	0.46	-	0	transcript_id "Ledus.S1G197000.t1"; gene_id "Ledus.S1G197000"
Ledus.S1	AUGUSTUS	exon	17620007	17620837	.	-	.	transcript_id "Ledus.S1G197000.t1"; gene_id "Ledus.S1G197000"
Ledus.S1	AUGUSTUS	intron	17620838	17621035	.	-	.	transcript_id "Ledus.S1G197000.t1"; gene_id "Ledus.S1G197000"
Ledus.S1	AUGUSTUS	CDS	17621036	17621173	0.98	-	0	transcript_id "Ledus.S1G197000.t1"; gene_id "Ledus.S1G197000"
Ledus.S1	AUGUSTUS	exon	17621036	17621173	.	-	.	transcript_id "Ledus.S1G197000.t1"; gene_id "Ledus.S1G197000"
Ledus.S1	AUGUSTUS	start_codon	17621171	17621173	.	-	0	transcript_id "Ledus.S1G197000.t1"; gene_id "Ledus.S1G197000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12357.t1 is derived from g5978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11419654	11422143	.	-	.	Ledus.S4G151300
Ledus.S4	AUGUSTUS	transcript	11419654	11422143	.	-	.	transcript_id "Ledus.S4G151300.t1"; gene_id "Ledus.S4G151300"
Ledus.S4	AUGUSTUS	stop_codon	11419651	11419653	.	-	0	transcript_id "Ledus.S4G151300.t1"; gene_id "Ledus.S4G151300"
Ledus.S4	AUGUSTUS	CDS	11419654	11420412	0.99	-	0	transcript_id "Ledus.S4G151300.t1"; gene_id "Ledus.S4G151300"
Ledus.S4	AUGUSTUS	exon	11419654	11420412	.	-	.	transcript_id "Ledus.S4G151300.t1"; gene_id "Ledus.S4G151300"
Ledus.S4	AUGUSTUS	intron	11420413	11420490	.	-	.	transcript_id "Ledus.S4G151300.t1"; gene_id "Ledus.S4G151300"
Ledus.S4	AUGUSTUS	CDS	11420491	11421054	0.93	-	0	transcript_id "Ledus.S4G151300.t1"; gene_id "Ledus.S4G151300"
Ledus.S4	AUGUSTUS	exon	11420491	11421054	.	-	.	transcript_id "Ledus.S4G151300.t1"; gene_id "Ledus.S4G151300"
Ledus.S4	AUGUSTUS	intron	11421055	11421597	.	-	.	transcript_id "Ledus.S4G151300.t1"; gene_id "Ledus.S4G151300"
Ledus.S4	AUGUSTUS	CDS	11421598	11422143	0.4	-	0	transcript_id "Ledus.S4G151300.t1"; gene_id "Ledus.S4G151300"
Ledus.S4	AUGUSTUS	exon	11421598	11422143	.	-	.	transcript_id "Ledus.S4G151300.t1"; gene_id "Ledus.S4G151300"
Ledus.S4	AUGUSTUS	start_codon	11422141	11422143	.	-	0	transcript_id "Ledus.S4G151300.t1"; gene_id "Ledus.S4G151300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4814.t1 is derived from g2252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19929930	19930507	.	+	.	Ledus.S1G223500
Ledus.S1	AUGUSTUS	transcript	19929930	19930507	.	+	.	transcript_id "Ledus.S1G223500.t1"; gene_id "Ledus.S1G223500"
Ledus.S1	AUGUSTUS	start_codon	19929930	19929932	.	+	0	transcript_id "Ledus.S1G223500.t1"; gene_id "Ledus.S1G223500"
Ledus.S1	AUGUSTUS	CDS	19929930	19930215	0.53	+	0	transcript_id "Ledus.S1G223500.t1"; gene_id "Ledus.S1G223500"
Ledus.S1	AUGUSTUS	exon	19929930	19930215	.	+	.	transcript_id "Ledus.S1G223500.t1"; gene_id "Ledus.S1G223500"
Ledus.S1	AUGUSTUS	intron	19930216	19930322	.	+	.	transcript_id "Ledus.S1G223500.t1"; gene_id "Ledus.S1G223500"
Ledus.S1	AUGUSTUS	CDS	19930323	19930507	0.54	+	2	transcript_id "Ledus.S1G223500.t1"; gene_id "Ledus.S1G223500"
Ledus.S1	AUGUSTUS	exon	19930323	19930507	.	+	.	transcript_id "Ledus.S1G223500.t1"; gene_id "Ledus.S1G223500"
Ledus.S1	AUGUSTUS	stop_codon	19930508	19930510	.	+	0	transcript_id "Ledus.S1G223500.t1"; gene_id "Ledus.S1G223500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg780.t1 is derived from g7641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5046925	5048990	.	+	.	Ledus.S2G066200
Ledus.S2	AUGUSTUS	transcript	5046925	5048990	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	start_codon	5046925	5046927	.	+	0	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	CDS	5046925	5047158	0.78	+	0	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	exon	5046925	5047158	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	intron	5047159	5047238	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	CDS	5047239	5047652	1	+	0	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	exon	5047239	5047652	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	intron	5047653	5047738	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	CDS	5047739	5047834	1	+	0	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	exon	5047739	5047834	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	intron	5047835	5047925	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	CDS	5047926	5048090	1	+	0	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	exon	5047926	5048090	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	intron	5048091	5048188	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	CDS	5048189	5048294	1	+	0	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	exon	5048189	5048294	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	intron	5048295	5048388	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	CDS	5048389	5048552	1	+	2	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	exon	5048389	5048552	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	intron	5048553	5048663	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	CDS	5048664	5048990	0.89	+	0	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	exon	5048664	5048990	.	+	.	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
Ledus.S2	AUGUSTUS	stop_codon	5048991	5048993	.	+	0	transcript_id "Ledus.S2G066200.t1"; gene_id "Ledus.S2G066200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10186.t1 is derived from g11216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13489583	13491115	.	+	.	Ledus.S3G166300
Ledus.S3	AUGUSTUS	transcript	13489583	13491115	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	start_codon	13489583	13489585	.	+	0	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	CDS	13489583	13489647	1	+	0	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	exon	13489583	13489647	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	intron	13489648	13490068	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	CDS	13490069	13490183	0.94	+	1	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	exon	13490069	13490183	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	intron	13490184	13490278	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	CDS	13490279	13490289	0.81	+	0	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	exon	13490279	13490289	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	intron	13490290	13490465	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	CDS	13490466	13490586	0.9	+	1	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	exon	13490466	13490586	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	intron	13490587	13490689	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	CDS	13490690	13490776	1	+	0	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	exon	13490690	13490776	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	intron	13490777	13490869	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	CDS	13490870	13491004	1	+	0	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	exon	13490870	13491004	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	intron	13491005	13491082	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	CDS	13491083	13491115	1	+	0	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	exon	13491083	13491115	.	+	.	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
Ledus.S3	AUGUSTUS	stop_codon	13491116	13491118	.	+	0	transcript_id "Ledus.S3G166300.t1"; gene_id "Ledus.S3G166300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11386.t1 is derived from g5004.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3950401	3951423	.	-	.	Ledus.S4G054200
Ledus.S4	AUGUSTUS	transcript	3950401	3951423	.	-	.	transcript_id "Ledus.S4G054200.t1"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	stop_codon	3950398	3950400	.	-	0	transcript_id "Ledus.S4G054200.t1"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	CDS	3950401	3951128	1	-	2	transcript_id "Ledus.S4G054200.t1"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	exon	3950401	3951128	.	-	.	transcript_id "Ledus.S4G054200.t1"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	intron	3951129	3951206	.	-	.	transcript_id "Ledus.S4G054200.t1"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	CDS	3951207	3951423	1	-	0	transcript_id "Ledus.S4G054200.t1"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	exon	3951207	3951423	.	-	.	transcript_id "Ledus.S4G054200.t1"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	start_codon	3951421	3951423	.	-	0	transcript_id "Ledus.S4G054200.t1"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	transcript	3950401	3951423	.	-	.	transcript_id "Ledus.S4G054200.t2"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	stop_codon	3950398	3950400	.	-	0	transcript_id "Ledus.S4G054200.t2"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	CDS	3950401	3951128	0.86	-	2	transcript_id "Ledus.S4G054200.t2"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	exon	3950401	3951128	.	-	.	transcript_id "Ledus.S4G054200.t2"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	intron	3951129	3951191	.	-	.	transcript_id "Ledus.S4G054200.t2"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	CDS	3951192	3951423	0.86	-	0	transcript_id "Ledus.S4G054200.t2"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	exon	3951192	3951423	.	-	.	transcript_id "Ledus.S4G054200.t2"; gene_id "Ledus.S4G054200"
Ledus.S4	AUGUSTUS	start_codon	3951421	3951423	.	-	0	transcript_id "Ledus.S4G054200.t2"; gene_id "Ledus.S4G054200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg415.t1 is derived from g7276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2316416	2321400	.	-	.	Ledus.S2G029700
Ledus.S2	AUGUSTUS	transcript	2316416	2321400	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	stop_codon	2316413	2316415	.	-	0	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2316416	2316537	0.91	-	2	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2316416	2316537	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2316538	2316680	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2316681	2316731	0.94	-	2	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2316681	2316731	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2316732	2316792	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2316793	2316832	0.94	-	0	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2316793	2316832	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2316833	2316913	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2316914	2317028	1	-	1	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2316914	2317028	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2317029	2317174	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2317175	2317236	1	-	0	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2317175	2317236	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2317237	2317319	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2317320	2317433	0.96	-	0	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2317320	2317433	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2317434	2317723	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2317724	2317810	0.96	-	0	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2317724	2317810	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2317811	2317915	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2317916	2318096	0.62	-	1	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2317916	2318096	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2318097	2318209	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2318210	2318319	1	-	0	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2318210	2318319	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2318320	2318426	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2318427	2318537	1	-	0	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2318427	2318537	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2318538	2318619	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2318620	2318670	1	-	0	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2318620	2318670	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2318671	2318770	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2318771	2318900	1	-	1	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2318771	2318900	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2318901	2319040	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2319041	2319139	1	-	1	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2319041	2319139	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2319140	2319316	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2319317	2319421	1	-	1	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2319317	2319421	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2319422	2319605	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2319606	2319740	1	-	1	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2319606	2319740	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2319741	2320024	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2320025	2320265	1	-	2	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2320025	2320265	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2320266	2320421	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2320422	2320604	1	-	2	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2320422	2320604	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2320605	2320734	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2320735	2320813	1	-	0	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2320735	2320813	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2320814	2320912	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2320913	2320943	1	-	1	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2320913	2320943	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2320944	2321179	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2321180	2321298	0.96	-	0	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2321180	2321298	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	intron	2321299	2321382	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	CDS	2321383	2321400	0.69	-	0	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	exon	2321383	2321400	.	-	.	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
Ledus.S2	AUGUSTUS	start_codon	2321398	2321400	.	-	0	transcript_id "Ledus.S2G029700.t1"; gene_id "Ledus.S2G029700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12795.t1 is derived from g6417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14640660	14648978	.	+	.	Ledus.S4G195100
Ledus.S4	AUGUSTUS	transcript	14640660	14648978	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	start_codon	14640660	14640662	.	+	0	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	CDS	14640660	14640797	0.84	+	0	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	exon	14640660	14640797	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	intron	14640798	14641296	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	CDS	14641297	14641375	1	+	0	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	exon	14641297	14641375	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	intron	14641376	14641870	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	CDS	14641871	14642007	1	+	2	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	exon	14641871	14642007	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	intron	14642008	14642142	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	CDS	14642143	14642487	0.82	+	0	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	exon	14642143	14642487	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	intron	14642488	14642586	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	CDS	14642587	14644259	0.99	+	0	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	exon	14642587	14644259	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	intron	14644260	14644470	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	CDS	14644471	14644919	0.99	+	1	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	exon	14644471	14644919	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	intron	14644920	14645080	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	CDS	14645081	14645190	1	+	2	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	exon	14645081	14645190	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	intron	14645191	14645283	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	CDS	14645284	14647608	0.99	+	0	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	exon	14645284	14647608	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	intron	14647609	14647744	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	CDS	14647745	14647908	0.85	+	0	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	exon	14647745	14647908	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	intron	14647909	14648024	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	CDS	14648025	14648290	0.79	+	1	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	exon	14648025	14648290	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	intron	14648291	14648429	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	CDS	14648430	14648620	1	+	2	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	exon	14648430	14648620	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	intron	14648621	14648780	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	CDS	14648781	14648978	1	+	0	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	exon	14648781	14648978	.	+	.	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
Ledus.S4	AUGUSTUS	stop_codon	14648979	14648981	.	+	0	transcript_id "Ledus.S4G195100.t1"; gene_id "Ledus.S4G195100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9080.t1 is derived from g10110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4404349	4408461	.	-	.	Ledus.S3G055700
Ledus.S3	AUGUSTUS	transcript	4404349	4408461	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	stop_codon	4404346	4404348	.	-	0	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	CDS	4404349	4405116	0.49	-	0	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	exon	4404349	4405116	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	intron	4405117	4405242	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	CDS	4405243	4405384	0.97	-	1	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	exon	4405243	4405384	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	intron	4405385	4405466	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	CDS	4405467	4406467	0.9	-	0	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	exon	4405467	4406467	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	intron	4406468	4406551	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	CDS	4406552	4407253	0.96	-	0	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	exon	4406552	4407253	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	intron	4407254	4407347	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	CDS	4407348	4407497	1	-	0	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	exon	4407348	4407497	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	intron	4407498	4407597	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	CDS	4407598	4407795	1	-	0	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	exon	4407598	4407795	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	intron	4407796	4407876	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	CDS	4407877	4407954	1	-	0	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	exon	4407877	4407954	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	intron	4407955	4408050	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	CDS	4408051	4408231	1	-	1	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	exon	4408051	4408231	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	intron	4408232	4408432	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	CDS	4408433	4408461	0.69	-	0	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	exon	4408433	4408461	.	-	.	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
Ledus.S3	AUGUSTUS	start_codon	4408459	4408461	.	-	0	transcript_id "Ledus.S3G055700.t1"; gene_id "Ledus.S3G055700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8134.t1 is derived from g12805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9304514	9306459	.	-	.	Ledus.S5G091200
Ledus.S5	AUGUSTUS	transcript	9304514	9306459	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	stop_codon	9304511	9304513	.	-	0	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	CDS	9304514	9304687	1	-	0	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	exon	9304514	9304687	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	intron	9304688	9304783	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	CDS	9304784	9304860	1	-	2	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	exon	9304784	9304860	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	intron	9304861	9304954	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	CDS	9304955	9305058	1	-	1	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	exon	9304955	9305058	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	intron	9305059	9305150	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	CDS	9305151	9305202	1	-	2	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	exon	9305151	9305202	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	intron	9305203	9305301	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	CDS	9305302	9305392	0.99	-	0	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	exon	9305302	9305392	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	intron	9305393	9305496	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	CDS	9305497	9305571	0.99	-	0	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	exon	9305497	9305571	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	intron	9305572	9305705	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	CDS	9305706	9305875	1	-	2	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	exon	9305706	9305875	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	intron	9305876	9306065	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	CDS	9306066	9306459	0.7	-	0	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	exon	9306066	9306459	.	-	.	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
Ledus.S5	AUGUSTUS	start_codon	9306457	9306459	.	-	0	transcript_id "Ledus.S5G091200.t1"; gene_id "Ledus.S5G091200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg305.t1 is derived from g7166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1530384	1530827	.	-	.	Ledus.S2G018700
Ledus.S2	AUGUSTUS	transcript	1530384	1530827	.	-	.	transcript_id "Ledus.S2G018700.t1"; gene_id "Ledus.S2G018700"
Ledus.S2	AUGUSTUS	stop_codon	1530381	1530383	.	-	0	transcript_id "Ledus.S2G018700.t1"; gene_id "Ledus.S2G018700"
Ledus.S2	AUGUSTUS	CDS	1530384	1530827	0.98	-	0	transcript_id "Ledus.S2G018700.t1"; gene_id "Ledus.S2G018700"
Ledus.S2	AUGUSTUS	exon	1530384	1530827	.	-	.	transcript_id "Ledus.S2G018700.t1"; gene_id "Ledus.S2G018700"
Ledus.S2	AUGUSTUS	start_codon	1530825	1530827	.	-	0	transcript_id "Ledus.S2G018700.t1"; gene_id "Ledus.S2G018700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4996.t1 is derived from g2434.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21070705	21073539	.	-	.	Ledus.S1G241700
Ledus.S1	AUGUSTUS	transcript	21070705	21073539	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	stop_codon	21070702	21070704	.	-	0	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	CDS	21070705	21070992	1	-	0	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	exon	21070705	21070992	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	intron	21070993	21071104	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	CDS	21071105	21071281	0.99	-	0	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	exon	21071105	21071281	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	intron	21071282	21071363	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	CDS	21071364	21071474	1	-	0	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	exon	21071364	21071474	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	intron	21071475	21071567	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	CDS	21071568	21071816	1	-	0	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	exon	21071568	21071816	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	intron	21071817	21071986	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	CDS	21071987	21072043	1	-	0	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	exon	21071987	21072043	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	intron	21072044	21072142	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	CDS	21072143	21072448	1	-	0	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	exon	21072143	21072448	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	intron	21072449	21072572	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	CDS	21072573	21072716	0.53	-	0	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	exon	21072573	21072716	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	intron	21072717	21072840	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	CDS	21072841	21073539	1	-	0	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	exon	21072841	21073539	.	-	.	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
Ledus.S1	AUGUSTUS	start_codon	21073537	21073539	.	-	0	transcript_id "Ledus.S1G241700.t1"; gene_id "Ledus.S1G241700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4850.t1 is derived from g2288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20198719	20199800	.	+	.	Ledus.S1G227100
Ledus.S1	AUGUSTUS	transcript	20198719	20199800	.	+	.	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	start_codon	20198719	20198721	.	+	0	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	CDS	20198719	20198880	0.58	+	0	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	exon	20198719	20198880	.	+	.	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	intron	20198881	20199030	.	+	.	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	CDS	20199031	20199082	0.91	+	0	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	exon	20199031	20199082	.	+	.	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	intron	20199083	20199175	.	+	.	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	CDS	20199176	20199207	0.91	+	2	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	exon	20199176	20199207	.	+	.	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	intron	20199208	20199356	.	+	.	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	CDS	20199357	20199390	1	+	0	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	exon	20199357	20199390	.	+	.	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	intron	20199391	20199488	.	+	.	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	CDS	20199489	20199556	0.99	+	2	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	exon	20199489	20199556	.	+	.	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	intron	20199557	20199659	.	+	.	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	CDS	20199660	20199800	1	+	0	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	exon	20199660	20199800	.	+	.	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
Ledus.S1	AUGUSTUS	stop_codon	20199801	20199803	.	+	0	transcript_id "Ledus.S1G227100.t1"; gene_id "Ledus.S1G227100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9359.t1 is derived from g10389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6356838	6360013	.	-	.	Ledus.S3G083600
Ledus.S3	AUGUSTUS	transcript	6356838	6360013	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	stop_codon	6356835	6356837	.	-	0	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	CDS	6356838	6357005	0.46	-	0	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	exon	6356838	6357005	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	intron	6357006	6357097	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	CDS	6357098	6357178	0.95	-	0	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	exon	6357098	6357178	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	intron	6357179	6357355	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	CDS	6357356	6357444	0.41	-	2	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	exon	6357356	6357444	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	intron	6357445	6357641	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	CDS	6357642	6357668	0.3	-	2	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	exon	6357642	6357668	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	intron	6357669	6358053	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	CDS	6358054	6358117	0.74	-	0	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	exon	6358054	6358117	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	intron	6358118	6358225	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	CDS	6358226	6358755	0.57	-	2	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	exon	6358226	6358755	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	intron	6358756	6358846	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	CDS	6358847	6358943	1	-	0	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	exon	6358847	6358943	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	intron	6358944	6359195	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	CDS	6359196	6359320	1	-	2	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	exon	6359196	6359320	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	intron	6359321	6359856	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	CDS	6359857	6360013	0.88	-	0	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	exon	6359857	6360013	.	-	.	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
Ledus.S3	AUGUSTUS	start_codon	6360011	6360013	.	-	0	transcript_id "Ledus.S3G083600.t1"; gene_id "Ledus.S3G083600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8319.t1 is derived from g12991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10714459	10717364	.	+	.	Ledus.S5G109700
Ledus.S5	AUGUSTUS	transcript	10714459	10717364	.	+	.	transcript_id "Ledus.S5G109700.t1"; gene_id "Ledus.S5G109700"
Ledus.S5	AUGUSTUS	start_codon	10714459	10714461	.	+	0	transcript_id "Ledus.S5G109700.t1"; gene_id "Ledus.S5G109700"
Ledus.S5	AUGUSTUS	CDS	10714459	10714469	0.74	+	0	transcript_id "Ledus.S5G109700.t1"; gene_id "Ledus.S5G109700"
Ledus.S5	AUGUSTUS	exon	10714459	10714469	.	+	.	transcript_id "Ledus.S5G109700.t1"; gene_id "Ledus.S5G109700"
Ledus.S5	AUGUSTUS	intron	10714470	10714559	.	+	.	transcript_id "Ledus.S5G109700.t1"; gene_id "Ledus.S5G109700"
Ledus.S5	AUGUSTUS	CDS	10714560	10715511	0.98	+	1	transcript_id "Ledus.S5G109700.t1"; gene_id "Ledus.S5G109700"
Ledus.S5	AUGUSTUS	exon	10714560	10715511	.	+	.	transcript_id "Ledus.S5G109700.t1"; gene_id "Ledus.S5G109700"
Ledus.S5	AUGUSTUS	intron	10715512	10715876	.	+	.	transcript_id "Ledus.S5G109700.t1"; gene_id "Ledus.S5G109700"
Ledus.S5	AUGUSTUS	CDS	10715877	10717364	0.98	+	0	transcript_id "Ledus.S5G109700.t1"; gene_id "Ledus.S5G109700"
Ledus.S5	AUGUSTUS	exon	10715877	10717364	.	+	.	transcript_id "Ledus.S5G109700.t1"; gene_id "Ledus.S5G109700"
Ledus.S5	AUGUSTUS	stop_codon	10717365	10717367	.	+	0	transcript_id "Ledus.S5G109700.t1"; gene_id "Ledus.S5G109700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11569.t1 is derived from g5187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5325395	5325970	.	-	.	Ledus.S4G072500
Ledus.S4	AUGUSTUS	transcript	5325395	5325970	.	-	.	transcript_id "Ledus.S4G072500.t1"; gene_id "Ledus.S4G072500"
Ledus.S4	AUGUSTUS	stop_codon	5325392	5325394	.	-	0	transcript_id "Ledus.S4G072500.t1"; gene_id "Ledus.S4G072500"
Ledus.S4	AUGUSTUS	CDS	5325395	5325970	0.62	-	0	transcript_id "Ledus.S4G072500.t1"; gene_id "Ledus.S4G072500"
Ledus.S4	AUGUSTUS	exon	5325395	5325970	.	-	.	transcript_id "Ledus.S4G072500.t1"; gene_id "Ledus.S4G072500"
Ledus.S4	AUGUSTUS	start_codon	5325968	5325970	.	-	0	transcript_id "Ledus.S4G072500.t1"; gene_id "Ledus.S4G072500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4873.t1 is derived from g2311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20456867	20457340	.	+	.	Ledus.S1G229400
Ledus.S1	AUGUSTUS	transcript	20456867	20457340	.	+	.	transcript_id "Ledus.S1G229400.t1"; gene_id "Ledus.S1G229400"
Ledus.S1	AUGUSTUS	start_codon	20456867	20456869	.	+	0	transcript_id "Ledus.S1G229400.t1"; gene_id "Ledus.S1G229400"
Ledus.S1	AUGUSTUS	CDS	20456867	20457340	0.56	+	0	transcript_id "Ledus.S1G229400.t1"; gene_id "Ledus.S1G229400"
Ledus.S1	AUGUSTUS	exon	20456867	20457340	.	+	.	transcript_id "Ledus.S1G229400.t1"; gene_id "Ledus.S1G229400"
Ledus.S1	AUGUSTUS	stop_codon	20457341	20457343	.	+	0	transcript_id "Ledus.S1G229400.t1"; gene_id "Ledus.S1G229400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10060.t1 is derived from g11090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12321436	12333381	.	+	.	Ledus.S3G153700
Ledus.S3	AUGUSTUS	transcript	12321436	12333381	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	start_codon	12321436	12321438	.	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12321436	12321441	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12321436	12321441	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12321442	12321538	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12321539	12322033	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12321539	12322033	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12322034	12322170	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12322171	12322195	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12322171	12322195	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12322196	12322320	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12322321	12322511	1	+	2	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12322321	12322511	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12322512	12322689	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12322690	12322824	0.93	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12322690	12322824	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12322825	12322947	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12322948	12323049	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12322948	12323049	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12323050	12323140	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12323141	12323187	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12323141	12323187	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12323188	12323286	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12323287	12323326	1	+	1	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12323287	12323326	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12323327	12323468	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12323469	12323593	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12323469	12323593	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12323594	12323789	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12323790	12324000	1	+	1	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12323790	12324000	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12324001	12324141	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12324142	12324228	0.96	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12324142	12324228	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12324229	12324350	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12324351	12324470	0.69	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12324351	12324470	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12324471	12324604	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12324605	12324657	0.6	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12324605	12324657	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12324658	12324762	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12324763	12324880	0.6	+	1	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12324763	12324880	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12324881	12325003	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12325004	12325201	0.89	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12325004	12325201	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12325202	12325377	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12325378	12325488	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12325378	12325488	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12325489	12325644	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12325645	12325764	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12325645	12325764	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12325765	12326008	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12326009	12326119	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12326009	12326119	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12326120	12326219	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12326220	12326285	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12326220	12326285	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12326286	12326425	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12326426	12326580	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12326426	12326580	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12326581	12326676	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12326677	12326986	1	+	1	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12326677	12326986	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12326987	12327242	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12327243	12327326	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12327243	12327326	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12327327	12327537	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12327538	12327975	0.54	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12327538	12327975	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12327976	12328045	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12328046	12328637	0.68	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12328046	12328637	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12328638	12328790	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12328791	12328902	1	+	2	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12328791	12328902	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12328903	12329071	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12329072	12329185	1	+	1	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12329072	12329185	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12329186	12329300	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12329301	12330672	0.29	+	1	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12329301	12330672	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12330673	12330778	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12330779	12331014	0.99	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12330779	12331014	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12331015	12331142	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12331143	12331368	1	+	1	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12331143	12331368	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12331369	12331451	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12331452	12331533	1	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12331452	12331533	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12331534	12331632	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12331633	12331709	1	+	2	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12331633	12331709	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12331710	12331886	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12331887	12332534	0.95	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12331887	12332534	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12332535	12332668	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12332669	12332850	0.97	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12332669	12332850	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12332851	12332955	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12332956	12333071	0.97	+	1	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12332956	12333071	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12333072	12333229	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12333230	12333381	0.97	+	2	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12333230	12333381	.	+	.	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	stop_codon	12333382	12333384	.	+	0	transcript_id "Ledus.S3G153700.t1"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	transcript	12321436	12333381	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	start_codon	12321436	12321438	.	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12321436	12321441	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12321436	12321441	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12321442	12321538	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12321539	12322033	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12321539	12322033	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12322034	12322170	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12322171	12322195	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12322171	12322195	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12322196	12322320	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12322321	12322511	1	+	2	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12322321	12322511	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12322512	12322689	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12322690	12322824	0.94	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12322690	12322824	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12322825	12322947	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12322948	12323049	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12322948	12323049	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12323050	12323140	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12323141	12323187	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12323141	12323187	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12323188	12323286	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12323287	12323326	1	+	1	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12323287	12323326	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12323327	12323468	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12323469	12323593	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12323469	12323593	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12323594	12323789	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12323790	12323820	0.78	+	1	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12323790	12323820	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12323821	12323972	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12323973	12324000	0.78	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12323973	12324000	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12324001	12324172	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12324173	12324228	0.77	+	2	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12324173	12324228	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12324229	12324350	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12324351	12324470	0.6	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12324351	12324470	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12324471	12324604	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12324605	12324657	0.72	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12324605	12324657	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12324658	12324762	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12324763	12324880	0.66	+	1	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12324763	12324880	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12324881	12325003	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12325004	12325201	0.82	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12325004	12325201	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12325202	12325377	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12325378	12325488	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12325378	12325488	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12325489	12325644	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12325645	12325764	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12325645	12325764	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12325765	12326008	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12326009	12326119	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12326009	12326119	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12326120	12326219	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12326220	12326285	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12326220	12326285	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12326286	12326425	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12326426	12326580	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12326426	12326580	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12326581	12326676	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12326677	12326986	1	+	1	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12326677	12326986	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12326987	12327242	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12327243	12327326	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12327243	12327326	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12327327	12327537	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12327538	12327975	0.76	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12327538	12327975	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12327976	12328045	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12328046	12328637	0.75	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12328046	12328637	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12328638	12328790	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12328791	12328902	1	+	2	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12328791	12328902	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12328903	12329071	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12329072	12329185	1	+	1	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12329072	12329185	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12329186	12329300	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12329301	12330672	0.41	+	1	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12329301	12330672	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12330673	12330778	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12330779	12331014	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12330779	12331014	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12331015	12331142	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12331143	12331368	1	+	1	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12331143	12331368	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12331369	12331451	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12331452	12331533	1	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12331452	12331533	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12331534	12331632	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12331633	12331709	1	+	2	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12331633	12331709	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12331710	12331886	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12331887	12332534	0.92	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12331887	12332534	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12332535	12332668	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12332669	12332850	0.99	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12332669	12332850	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12332851	12332955	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12332956	12333071	0.99	+	1	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12332956	12333071	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	intron	12333072	12333229	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	CDS	12333230	12333381	0.98	+	2	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	exon	12333230	12333381	.	+	.	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
Ledus.S3	AUGUSTUS	stop_codon	12333382	12333384	.	+	0	transcript_id "Ledus.S3G153700.t2"; gene_id "Ledus.S3G153700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8165.t1 is derived from g12836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9570409	9570901	.	+	.	Ledus.S5G094300
Ledus.S5	AUGUSTUS	transcript	9570409	9570901	.	+	.	transcript_id "Ledus.S5G094300.t1"; gene_id "Ledus.S5G094300"
Ledus.S5	AUGUSTUS	start_codon	9570409	9570411	.	+	0	transcript_id "Ledus.S5G094300.t1"; gene_id "Ledus.S5G094300"
Ledus.S5	AUGUSTUS	CDS	9570409	9570535	0.27	+	0	transcript_id "Ledus.S5G094300.t1"; gene_id "Ledus.S5G094300"
Ledus.S5	AUGUSTUS	exon	9570409	9570535	.	+	.	transcript_id "Ledus.S5G094300.t1"; gene_id "Ledus.S5G094300"
Ledus.S5	AUGUSTUS	intron	9570536	9570656	.	+	.	transcript_id "Ledus.S5G094300.t1"; gene_id "Ledus.S5G094300"
Ledus.S5	AUGUSTUS	CDS	9570657	9570901	0.53	+	2	transcript_id "Ledus.S5G094300.t1"; gene_id "Ledus.S5G094300"
Ledus.S5	AUGUSTUS	exon	9570657	9570901	.	+	.	transcript_id "Ledus.S5G094300.t1"; gene_id "Ledus.S5G094300"
Ledus.S5	AUGUSTUS	stop_codon	9570902	9570904	.	+	0	transcript_id "Ledus.S5G094300.t1"; gene_id "Ledus.S5G094300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4049.t1 is derived from g1485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14314178	14314786	.	+	.	Ledus.S1G147000
Ledus.S1	AUGUSTUS	transcript	14314178	14314786	.	+	.	transcript_id "Ledus.S1G147000.t1"; gene_id "Ledus.S1G147000"
Ledus.S1	AUGUSTUS	start_codon	14314178	14314180	.	+	0	transcript_id "Ledus.S1G147000.t1"; gene_id "Ledus.S1G147000"
Ledus.S1	AUGUSTUS	CDS	14314178	14314786	0.91	+	0	transcript_id "Ledus.S1G147000.t1"; gene_id "Ledus.S1G147000"
Ledus.S1	AUGUSTUS	exon	14314178	14314786	.	+	.	transcript_id "Ledus.S1G147000.t1"; gene_id "Ledus.S1G147000"
Ledus.S1	AUGUSTUS	stop_codon	14314787	14314789	.	+	0	transcript_id "Ledus.S1G147000.t1"; gene_id "Ledus.S1G147000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10867.t1 is derived from g4485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	164458	170323	.	+	.	Ledus.S4G002300
Ledus.S4	AUGUSTUS	transcript	164458	170323	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	start_codon	164458	164460	.	+	0	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	CDS	164458	164541	0.55	+	0	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	exon	164458	164541	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	intron	164542	164648	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	CDS	164649	164718	1	+	0	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	exon	164649	164718	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	intron	164719	164983	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	CDS	164984	165219	1	+	2	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	exon	164984	165219	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	intron	165220	165306	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	CDS	165307	165417	1	+	0	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	exon	165307	165417	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	intron	165418	165563	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	CDS	165564	165773	1	+	0	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	exon	165564	165773	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	intron	165774	165934	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	CDS	165935	166204	1	+	0	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	exon	165935	166204	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	intron	166205	166289	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	CDS	166290	166849	1	+	0	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	exon	166290	166849	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	intron	166850	167085	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	CDS	167086	170323	0.97	+	1	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	exon	167086	170323	.	+	.	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
Ledus.S4	AUGUSTUS	stop_codon	170324	170326	.	+	0	transcript_id "Ledus.S4G002300.t1"; gene_id "Ledus.S4G002300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5504.t1 is derived from g2943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24652508	24656338	.	-	.	Ledus.S1G292500
Ledus.S1	AUGUSTUS	transcript	24652508	24656054	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	stop_codon	24652505	24652507	.	-	0	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24652508	24652598	1	-	1	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24652508	24652598	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24652599	24652682	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24652683	24652806	1	-	2	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24652683	24652806	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24652807	24652885	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24652886	24652934	1	-	0	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24652886	24652934	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24652935	24653010	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24653011	24653076	1	-	0	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24653011	24653076	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24653077	24653179	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24653180	24653545	1	-	0	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24653180	24653545	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24653546	24653625	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24653626	24653784	1	-	0	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24653626	24653784	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24653785	24653892	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24653893	24654184	1	-	1	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24653893	24654184	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24654185	24654300	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24654301	24654647	0.99	-	0	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24654301	24654647	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24654648	24654733	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24654734	24654931	1	-	0	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24654734	24654931	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24654932	24655006	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24655007	24655290	1	-	2	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24655007	24655290	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24655291	24655389	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24655390	24655698	1	-	2	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24655390	24655698	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24655699	24655855	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24655856	24655863	0.82	-	1	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24655856	24655863	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24655864	24656043	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24656044	24656054	0.41	-	0	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24656044	24656054	.	-	.	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	start_codon	24656052	24656054	.	-	0	transcript_id "Ledus.S1G292500.t1"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	transcript	24652508	24656338	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	stop_codon	24652505	24652507	.	-	0	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24652508	24652598	1	-	1	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24652508	24652598	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24652599	24652682	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24652683	24652806	1	-	2	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24652683	24652806	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24652807	24652885	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24652886	24652934	1	-	0	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24652886	24652934	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24652935	24653010	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24653011	24653076	1	-	0	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24653011	24653076	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24653077	24653179	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24653180	24653545	0.99	-	0	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24653180	24653545	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24653546	24653625	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24653626	24653784	1	-	0	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24653626	24653784	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24653785	24653892	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24653893	24654184	0.99	-	1	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24653893	24654184	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24654185	24654300	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24654301	24654647	1	-	0	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24654301	24654647	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24654648	24654733	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24654734	24654931	1	-	0	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24654734	24654931	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24654932	24655006	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24655007	24655290	1	-	2	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24655007	24655290	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24655291	24655389	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24655390	24655667	0.51	-	1	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24655390	24655667	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24655668	24655855	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24655856	24655863	0.41	-	0	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24655856	24655863	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24655864	24656043	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24656044	24656167	0.34	-	1	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24656044	24656167	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	intron	24656168	24656255	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	CDS	24656256	24656338	0.27	-	0	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	exon	24656256	24656338	.	-	.	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
Ledus.S1	AUGUSTUS	start_codon	24656336	24656338	.	-	0	transcript_id "Ledus.S1G292500.t2"; gene_id "Ledus.S1G292500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg422.t1 is derived from g7283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2375855	2379389	.	+	.	Ledus.S2G030400
Ledus.S2	AUGUSTUS	transcript	2375855	2379389	.	+	.	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	start_codon	2375855	2375857	.	+	0	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	CDS	2375855	2376451	0.98	+	0	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	exon	2375855	2376451	.	+	.	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	intron	2376452	2376530	.	+	.	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	CDS	2376531	2377100	1	+	0	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	exon	2376531	2377100	.	+	.	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	intron	2377101	2377188	.	+	.	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	CDS	2377189	2378391	0.93	+	0	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	exon	2377189	2378391	.	+	.	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	intron	2378392	2378474	.	+	.	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	CDS	2378475	2378802	1	+	0	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	exon	2378475	2378802	.	+	.	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	intron	2378803	2378895	.	+	.	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	CDS	2378896	2379389	0.98	+	2	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	exon	2378896	2379389	.	+	.	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
Ledus.S2	AUGUSTUS	stop_codon	2379390	2379392	.	+	0	transcript_id "Ledus.S2G030400.t1"; gene_id "Ledus.S2G030400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10176.t1 is derived from g11206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13452196	13453380	.	+	.	Ledus.S3G165300
Ledus.S3	AUGUSTUS	transcript	13452196	13453380	.	+	.	transcript_id "Ledus.S3G165300.t1"; gene_id "Ledus.S3G165300"
Ledus.S3	AUGUSTUS	start_codon	13452196	13452198	.	+	0	transcript_id "Ledus.S3G165300.t1"; gene_id "Ledus.S3G165300"
Ledus.S3	AUGUSTUS	CDS	13452196	13453380	1	+	0	transcript_id "Ledus.S3G165300.t1"; gene_id "Ledus.S3G165300"
Ledus.S3	AUGUSTUS	exon	13452196	13453380	.	+	.	transcript_id "Ledus.S3G165300.t1"; gene_id "Ledus.S3G165300"
Ledus.S3	AUGUSTUS	stop_codon	13453381	13453383	.	+	0	transcript_id "Ledus.S3G165300.t1"; gene_id "Ledus.S3G165300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11579.t1 is derived from g5197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5370279	5371240	.	+	.	Ledus.S4G073500
Ledus.S4	AUGUSTUS	transcript	5370279	5371240	.	+	.	transcript_id "Ledus.S4G073500.t1"; gene_id "Ledus.S4G073500"
Ledus.S4	AUGUSTUS	start_codon	5370279	5370281	.	+	0	transcript_id "Ledus.S4G073500.t1"; gene_id "Ledus.S4G073500"
Ledus.S4	AUGUSTUS	CDS	5370279	5370570	0.72	+	0	transcript_id "Ledus.S4G073500.t1"; gene_id "Ledus.S4G073500"
Ledus.S4	AUGUSTUS	exon	5370279	5370570	.	+	.	transcript_id "Ledus.S4G073500.t1"; gene_id "Ledus.S4G073500"
Ledus.S4	AUGUSTUS	intron	5370571	5370812	.	+	.	transcript_id "Ledus.S4G073500.t1"; gene_id "Ledus.S4G073500"
Ledus.S4	AUGUSTUS	CDS	5370813	5370971	0.59	+	2	transcript_id "Ledus.S4G073500.t1"; gene_id "Ledus.S4G073500"
Ledus.S4	AUGUSTUS	exon	5370813	5370971	.	+	.	transcript_id "Ledus.S4G073500.t1"; gene_id "Ledus.S4G073500"
Ledus.S4	AUGUSTUS	intron	5370972	5371061	.	+	.	transcript_id "Ledus.S4G073500.t1"; gene_id "Ledus.S4G073500"
Ledus.S4	AUGUSTUS	CDS	5371062	5371240	0.43	+	2	transcript_id "Ledus.S4G073500.t1"; gene_id "Ledus.S4G073500"
Ledus.S4	AUGUSTUS	exon	5371062	5371240	.	+	.	transcript_id "Ledus.S4G073500.t1"; gene_id "Ledus.S4G073500"
Ledus.S4	AUGUSTUS	stop_codon	5371241	5371243	.	+	0	transcript_id "Ledus.S4G073500.t1"; gene_id "Ledus.S4G073500"
# This transcript jg11306.t2 is derived from g4924.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11307.t1 is derived from g4925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3485279	3486119	.	-	.	Ledus.S4G046300
Ledus.S4	AUGUSTUS	transcript	3485279	3486119	.	-	.	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	stop_codon	3485276	3485278	.	-	0	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	CDS	3485279	3485493	1	-	2	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	exon	3485279	3485493	.	-	.	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	intron	3485494	3485586	.	-	.	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	CDS	3485587	3485665	0.99	-	0	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	exon	3485587	3485665	.	-	.	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	intron	3485666	3485787	.	-	.	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	CDS	3485788	3485865	1	-	0	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	exon	3485788	3485865	.	-	.	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	intron	3485866	3485948	.	-	.	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	CDS	3485949	3486119	0.88	-	0	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	exon	3485949	3486119	.	-	.	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
Ledus.S4	AUGUSTUS	start_codon	3486117	3486119	.	-	0	transcript_id "Ledus.S4G046300.t1"; gene_id "Ledus.S4G046300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2843.t1 is derived from g277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4135521	4136448	.	+	.	Ledus.S1G026400
Ledus.S1	AUGUSTUS	transcript	4135521	4136448	.	+	.	transcript_id "Ledus.S1G026400.t1"; gene_id "Ledus.S1G026400"
Ledus.S1	AUGUSTUS	start_codon	4135521	4135523	.	+	0	transcript_id "Ledus.S1G026400.t1"; gene_id "Ledus.S1G026400"
Ledus.S1	AUGUSTUS	CDS	4135521	4135665	0.93	+	0	transcript_id "Ledus.S1G026400.t1"; gene_id "Ledus.S1G026400"
Ledus.S1	AUGUSTUS	exon	4135521	4135665	.	+	.	transcript_id "Ledus.S1G026400.t1"; gene_id "Ledus.S1G026400"
Ledus.S1	AUGUSTUS	intron	4135666	4135747	.	+	.	transcript_id "Ledus.S1G026400.t1"; gene_id "Ledus.S1G026400"
Ledus.S1	AUGUSTUS	CDS	4135748	4136060	1	+	2	transcript_id "Ledus.S1G026400.t1"; gene_id "Ledus.S1G026400"
Ledus.S1	AUGUSTUS	exon	4135748	4136060	.	+	.	transcript_id "Ledus.S1G026400.t1"; gene_id "Ledus.S1G026400"
Ledus.S1	AUGUSTUS	intron	4136061	4136147	.	+	.	transcript_id "Ledus.S1G026400.t1"; gene_id "Ledus.S1G026400"
Ledus.S1	AUGUSTUS	CDS	4136148	4136448	1	+	1	transcript_id "Ledus.S1G026400.t1"; gene_id "Ledus.S1G026400"
Ledus.S1	AUGUSTUS	exon	4136148	4136448	.	+	.	transcript_id "Ledus.S1G026400.t1"; gene_id "Ledus.S1G026400"
Ledus.S1	AUGUSTUS	stop_codon	4136449	4136451	.	+	0	transcript_id "Ledus.S1G026400.t1"; gene_id "Ledus.S1G026400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg353.t1 is derived from g7214.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1859852	1861206	.	+	.	Ledus.S2G023500
Ledus.S2	AUGUSTUS	transcript	1859852	1861206	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	start_codon	1859852	1859854	.	+	0	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	CDS	1859852	1859879	0.98	+	0	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	exon	1859852	1859879	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	intron	1859880	1859991	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	CDS	1859992	1860248	0.96	+	2	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	exon	1859992	1860248	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	intron	1860249	1860336	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	CDS	1860337	1860395	1	+	0	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	exon	1860337	1860395	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	intron	1860396	1860498	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	CDS	1860499	1860559	1	+	1	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	exon	1860499	1860559	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	intron	1860560	1860645	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	CDS	1860646	1860736	1	+	0	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	exon	1860646	1860736	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	intron	1860737	1860884	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	CDS	1860885	1860961	1	+	2	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	exon	1860885	1860961	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	intron	1860962	1861083	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	CDS	1861084	1861206	0.97	+	0	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	exon	1861084	1861206	.	+	.	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
Ledus.S2	AUGUSTUS	stop_codon	1861207	1861209	.	+	0	transcript_id "Ledus.S2G023500.t1"; gene_id "Ledus.S2G023500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1094.t1 is derived from g7955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7494359	7496350	.	+	.	Ledus.S2G097600
Ledus.S2	AUGUSTUS	transcript	7494359	7496350	.	+	.	transcript_id "Ledus.S2G097600.t1"; gene_id "Ledus.S2G097600"
Ledus.S2	AUGUSTUS	start_codon	7494359	7494361	.	+	0	transcript_id "Ledus.S2G097600.t1"; gene_id "Ledus.S2G097600"
Ledus.S2	AUGUSTUS	CDS	7494359	7496350	0.8	+	0	transcript_id "Ledus.S2G097600.t1"; gene_id "Ledus.S2G097600"
Ledus.S2	AUGUSTUS	exon	7494359	7496350	.	+	.	transcript_id "Ledus.S2G097600.t1"; gene_id "Ledus.S2G097600"
Ledus.S2	AUGUSTUS	stop_codon	7496351	7496353	.	+	0	transcript_id "Ledus.S2G097600.t1"; gene_id "Ledus.S2G097600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7259.t1 is derived from g11930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	516991	519814	.	-	.	Ledus.S5G003700
Ledus.S5	AUGUSTUS	transcript	516991	519814	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	stop_codon	516988	516990	.	-	0	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	CDS	516991	517321	0.94	-	1	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	exon	516991	517321	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	intron	517322	517427	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	CDS	517428	517648	0.99	-	0	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	exon	517428	517648	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	intron	517649	517736	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	CDS	517737	517840	1	-	2	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	exon	517737	517840	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	intron	517841	517947	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	CDS	517948	518184	0.97	-	2	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	exon	517948	518184	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	intron	518185	518337	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	CDS	518338	518536	1	-	0	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	exon	518338	518536	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	intron	518537	518683	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	CDS	518684	518866	1	-	0	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	exon	518684	518866	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	intron	518867	518998	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	CDS	518999	519163	1	-	0	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	exon	518999	519163	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	intron	519164	519403	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	CDS	519404	519814	0.89	-	0	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	exon	519404	519814	.	-	.	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
Ledus.S5	AUGUSTUS	start_codon	519812	519814	.	-	0	transcript_id "Ledus.S5G003700.t1"; gene_id "Ledus.S5G003700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11714.t1 is derived from g5333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6185952	6187952	.	+	.	Ledus.S4G087000
Ledus.S4	AUGUSTUS	transcript	6185952	6187952	.	+	.	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	start_codon	6185952	6185954	.	+	0	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	CDS	6185952	6186252	0.33	+	0	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	exon	6185952	6186252	.	+	.	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	intron	6186253	6186496	.	+	.	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	CDS	6186497	6186667	0.77	+	2	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	exon	6186497	6186667	.	+	.	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	intron	6186668	6186787	.	+	.	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	CDS	6186788	6186863	0.99	+	2	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	exon	6186788	6186863	.	+	.	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	intron	6186864	6187023	.	+	.	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	CDS	6187024	6187204	0.54	+	1	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	exon	6187024	6187204	.	+	.	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	intron	6187205	6187299	.	+	.	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	CDS	6187300	6187366	0.54	+	0	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	exon	6187300	6187366	.	+	.	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	intron	6187367	6187452	.	+	.	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	CDS	6187453	6187952	0.66	+	2	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	exon	6187453	6187952	.	+	.	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
Ledus.S4	AUGUSTUS	stop_codon	6187953	6187955	.	+	0	transcript_id "Ledus.S4G087000.t1"; gene_id "Ledus.S4G087000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11007.t1 is derived from g4625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1079437	1080244	.	+	.	Ledus.S4G016300
Ledus.S4	AUGUSTUS	transcript	1079437	1080244	.	+	.	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	start_codon	1079437	1079439	.	+	0	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	CDS	1079437	1079566	0.64	+	0	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	exon	1079437	1079566	.	+	.	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	intron	1079567	1079667	.	+	.	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	CDS	1079668	1079816	0.8	+	2	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	exon	1079668	1079816	.	+	.	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	intron	1079817	1079914	.	+	.	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	CDS	1079915	1079948	0.97	+	0	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	exon	1079915	1079948	.	+	.	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	intron	1079949	1080049	.	+	.	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	CDS	1080050	1080143	0.7	+	2	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	exon	1080050	1080143	.	+	.	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	intron	1080144	1080231	.	+	.	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	CDS	1080232	1080244	1	+	1	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	exon	1080232	1080244	.	+	.	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
Ledus.S4	AUGUSTUS	stop_codon	1080245	1080247	.	+	0	transcript_id "Ledus.S4G016300.t1"; gene_id "Ledus.S4G016300"
# This transcript jg8371.t2 is derived from g13043.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8372.t1 is derived from g13044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11275580	11277397	.	+	.	Ledus.S5G115000
Ledus.S5	AUGUSTUS	transcript	11275580	11277397	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	start_codon	11275580	11275582	.	+	0	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	CDS	11275580	11275737	0.97	+	0	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	exon	11275580	11275737	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	intron	11275738	11276097	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	CDS	11276098	11276138	1	+	1	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	exon	11276098	11276138	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	intron	11276139	11276461	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	CDS	11276462	11276540	1	+	2	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	exon	11276462	11276540	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	intron	11276541	11276678	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	CDS	11276679	11276765	1	+	1	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	exon	11276679	11276765	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	intron	11276766	11276899	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	CDS	11276900	11276985	1	+	1	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	exon	11276900	11276985	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	intron	11276986	11277120	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	CDS	11277121	11277192	1	+	2	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	exon	11277121	11277192	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	intron	11277193	11277281	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	CDS	11277282	11277397	1	+	2	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	exon	11277282	11277397	.	+	.	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
Ledus.S5	AUGUSTUS	stop_codon	11277398	11277400	.	+	0	transcript_id "Ledus.S5G115000.t1"; gene_id "Ledus.S5G115000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3185.t1 is derived from g620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6646633	6648503	.	-	.	Ledus.S1G060600
Ledus.S1	AUGUSTUS	transcript	6646633	6648503	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	stop_codon	6646630	6646632	.	-	0	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	CDS	6646633	6646675	0.98	-	1	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	exon	6646633	6646675	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	intron	6646676	6646757	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	CDS	6646758	6646843	1	-	0	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	exon	6646758	6646843	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	intron	6646844	6647072	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	CDS	6647073	6647161	1	-	2	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	exon	6647073	6647161	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	intron	6647162	6647258	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	CDS	6647259	6647351	1	-	2	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	exon	6647259	6647351	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	intron	6647352	6647469	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	CDS	6647470	6647554	1	-	0	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	exon	6647470	6647554	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	intron	6647555	6647885	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	CDS	6647886	6647967	0.71	-	1	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	exon	6647886	6647967	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	intron	6647968	6648055	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	CDS	6648056	6648104	0.68	-	2	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	exon	6648056	6648104	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	intron	6648105	6648246	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	CDS	6648247	6648264	0.68	-	2	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	exon	6648247	6648264	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	intron	6648265	6648484	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	CDS	6648485	6648503	0.51	-	0	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	exon	6648485	6648503	.	-	.	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
Ledus.S1	AUGUSTUS	start_codon	6648501	6648503	.	-	0	transcript_id "Ledus.S1G060600.t1"; gene_id "Ledus.S1G060600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8762.t1 is derived from g9792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1874542	1875765	.	-	.	Ledus.S3G023900
Ledus.S3	AUGUSTUS	transcript	1874542	1875765	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	stop_codon	1874539	1874541	.	-	0	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	CDS	1874542	1874669	0.39	-	2	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	exon	1874542	1874669	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	intron	1874670	1874763	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	CDS	1874764	1874840	0.38	-	1	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	exon	1874764	1874840	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	intron	1874841	1874930	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	CDS	1874931	1875071	1	-	1	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	exon	1874931	1875071	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	intron	1875072	1875288	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	CDS	1875289	1875360	1	-	1	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	exon	1875289	1875360	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	intron	1875361	1875446	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	CDS	1875447	1875461	1	-	1	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	exon	1875447	1875461	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	intron	1875462	1875554	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	CDS	1875555	1875590	1	-	1	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	exon	1875555	1875590	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	intron	1875591	1875745	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	CDS	1875746	1875765	1	-	0	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	exon	1875746	1875765	.	-	.	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
Ledus.S3	AUGUSTUS	start_codon	1875763	1875765	.	-	0	transcript_id "Ledus.S3G023900.t1"; gene_id "Ledus.S3G023900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5579.t1 is derived from g3018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25238498	25240546	.	+	.	Ledus.S1G300000
Ledus.S1	AUGUSTUS	transcript	25238498	25240546	.	+	.	transcript_id "Ledus.S1G300000.t1"; gene_id "Ledus.S1G300000"
Ledus.S1	AUGUSTUS	start_codon	25238498	25238500	.	+	0	transcript_id "Ledus.S1G300000.t1"; gene_id "Ledus.S1G300000"
Ledus.S1	AUGUSTUS	CDS	25238498	25240546	1	+	0	transcript_id "Ledus.S1G300000.t1"; gene_id "Ledus.S1G300000"
Ledus.S1	AUGUSTUS	exon	25238498	25240546	.	+	.	transcript_id "Ledus.S1G300000.t1"; gene_id "Ledus.S1G300000"
Ledus.S1	AUGUSTUS	stop_codon	25240547	25240549	.	+	0	transcript_id "Ledus.S1G300000.t1"; gene_id "Ledus.S1G300000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1606.t1 is derived from g8467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11329196	11333308	.	+	.	Ledus.S2G148800
Ledus.S2	AUGUSTUS	transcript	11329196	11333308	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	start_codon	11329196	11329198	.	+	0	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	CDS	11329196	11330570	0.7	+	0	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	exon	11329196	11330570	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	intron	11330571	11330676	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	CDS	11330677	11331094	1	+	2	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	exon	11330677	11331094	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	intron	11331095	11331257	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	CDS	11331258	11331402	1	+	1	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	exon	11331258	11331402	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	intron	11331403	11331702	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	CDS	11331703	11331818	1	+	0	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	exon	11331703	11331818	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	intron	11331819	11331946	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	CDS	11331947	11332025	0.92	+	1	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	exon	11331947	11332025	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	intron	11332026	11332139	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	CDS	11332140	11332373	0.99	+	0	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	exon	11332140	11332373	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	intron	11332374	11332467	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	CDS	11332468	11332809	0.56	+	0	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	exon	11332468	11332809	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	intron	11332810	11333074	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	CDS	11333075	11333114	0.5	+	0	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	exon	11333075	11333114	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	intron	11333115	11333294	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	CDS	11333295	11333308	1	+	2	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	exon	11333295	11333308	.	+	.	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
Ledus.S2	AUGUSTUS	stop_codon	11333309	11333311	.	+	0	transcript_id "Ledus.S2G148800.t1"; gene_id "Ledus.S2G148800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11071.t1 is derived from g4689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1603944	1606048	.	-	.	Ledus.S4G022700
Ledus.S4	AUGUSTUS	transcript	1603944	1606048	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	stop_codon	1603941	1603943	.	-	0	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	CDS	1603944	1604016	1	-	1	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	exon	1603944	1604016	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	intron	1604017	1604118	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	CDS	1604119	1604369	0.99	-	0	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	exon	1604119	1604369	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	intron	1604370	1604471	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	CDS	1604472	1604531	0.99	-	0	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	exon	1604472	1604531	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	intron	1604532	1604686	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	CDS	1604687	1604704	0.91	-	0	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	exon	1604687	1604704	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	intron	1604705	1604789	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	CDS	1604790	1604839	0.59	-	2	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	exon	1604790	1604839	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	intron	1604840	1604913	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	CDS	1604914	1604977	0.96	-	0	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	exon	1604914	1604977	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	intron	1604978	1605074	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	CDS	1605075	1605151	1	-	2	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	exon	1605075	1605151	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	intron	1605152	1605229	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	CDS	1605230	1605280	1	-	2	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	exon	1605230	1605280	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	intron	1605281	1605765	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	CDS	1605766	1605871	0.98	-	0	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	exon	1605766	1605871	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	intron	1605872	1605976	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	CDS	1605977	1606048	0.96	-	0	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	exon	1605977	1606048	.	-	.	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
Ledus.S4	AUGUSTUS	start_codon	1606046	1606048	.	-	0	transcript_id "Ledus.S4G022700.t1"; gene_id "Ledus.S4G022700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4335.t1 is derived from g1771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16431779	16433195	.	-	.	Ledus.S1G175600
Ledus.S1	AUGUSTUS	transcript	16431779	16433195	.	-	.	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	stop_codon	16431776	16431778	.	-	0	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	CDS	16431779	16431906	0.86	-	2	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	exon	16431779	16431906	.	-	.	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	intron	16431907	16432005	.	-	.	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	CDS	16432006	16432234	1	-	0	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	exon	16432006	16432234	.	-	.	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	intron	16432235	16432413	.	-	.	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	CDS	16432414	16432611	1	-	0	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	exon	16432414	16432611	.	-	.	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	intron	16432612	16432702	.	-	.	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	CDS	16432703	16432965	1	-	2	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	exon	16432703	16432965	.	-	.	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	intron	16432966	16433077	.	-	.	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	CDS	16433078	16433195	0.96	-	0	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	exon	16433078	16433195	.	-	.	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
Ledus.S1	AUGUSTUS	start_codon	16433193	16433195	.	-	0	transcript_id "Ledus.S1G175600.t1"; gene_id "Ledus.S1G175600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5766.t1 is derived from g3207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26657827	26660796	.	-	.	Ledus.S1G318700
Ledus.S1	AUGUSTUS	transcript	26657827	26660796	.	-	.	transcript_id "Ledus.S1G318700.t1"; gene_id "Ledus.S1G318700"
Ledus.S1	AUGUSTUS	stop_codon	26657824	26657826	.	-	0	transcript_id "Ledus.S1G318700.t1"; gene_id "Ledus.S1G318700"
Ledus.S1	AUGUSTUS	CDS	26657827	26660796	0.76	-	0	transcript_id "Ledus.S1G318700.t1"; gene_id "Ledus.S1G318700"
Ledus.S1	AUGUSTUS	exon	26657827	26660796	.	-	.	transcript_id "Ledus.S1G318700.t1"; gene_id "Ledus.S1G318700"
Ledus.S1	AUGUSTUS	start_codon	26660794	26660796	.	-	0	transcript_id "Ledus.S1G318700.t1"; gene_id "Ledus.S1G318700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2948.t1 is derived from g383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4795522	4796393	.	+	.	Ledus.S1G036900
Ledus.S1	AUGUSTUS	transcript	4795522	4796393	.	+	.	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	start_codon	4795522	4795524	.	+	0	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	CDS	4795522	4795692	0.45	+	0	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	exon	4795522	4795692	.	+	.	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	intron	4795693	4795780	.	+	.	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	CDS	4795781	4795898	1	+	0	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	exon	4795781	4795898	.	+	.	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	intron	4795899	4796066	.	+	.	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	CDS	4796067	4796253	0.95	+	2	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	exon	4796067	4796253	.	+	.	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	intron	4796254	4796362	.	+	.	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	CDS	4796363	4796393	0.95	+	1	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	exon	4796363	4796393	.	+	.	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
Ledus.S1	AUGUSTUS	stop_codon	4796394	4796396	.	+	0	transcript_id "Ledus.S1G036900.t1"; gene_id "Ledus.S1G036900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11573.t1 is derived from g5191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5337649	5340973	.	-	.	Ledus.S4G072900
Ledus.S4	AUGUSTUS	transcript	5337649	5340973	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	stop_codon	5337646	5337648	.	-	0	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	CDS	5337649	5337701	1	-	2	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	exon	5337649	5337701	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	intron	5337702	5337847	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	CDS	5337848	5337944	1	-	0	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	exon	5337848	5337944	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	intron	5337945	5338120	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	CDS	5338121	5338211	0.99	-	1	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	exon	5338121	5338211	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	intron	5338212	5338316	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	CDS	5338317	5338417	0.99	-	0	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	exon	5338317	5338417	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	intron	5338418	5338505	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	CDS	5338506	5338604	1	-	0	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	exon	5338506	5338604	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	intron	5338605	5338723	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	CDS	5338724	5338861	0.94	-	0	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	exon	5338724	5338861	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	intron	5338862	5338968	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	CDS	5338969	5339652	0.79	-	0	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	exon	5338969	5339652	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	intron	5339653	5339761	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	CDS	5339762	5339935	1	-	0	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	exon	5339762	5339935	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	intron	5339936	5340012	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	CDS	5340013	5340148	1	-	1	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	exon	5340013	5340148	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	intron	5340149	5340243	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	CDS	5340244	5340275	1	-	0	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	exon	5340244	5340275	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	intron	5340276	5340372	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	CDS	5340373	5340429	1	-	0	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	exon	5340373	5340429	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	intron	5340430	5340661	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	CDS	5340662	5340973	0.87	-	0	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	exon	5340662	5340973	.	-	.	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
Ledus.S4	AUGUSTUS	start_codon	5340971	5340973	.	-	0	transcript_id "Ledus.S4G072900.t1"; gene_id "Ledus.S4G072900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12721.t1 is derived from g6343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14072562	14077392	.	-	.	Ledus.S4G187700
Ledus.S4	AUGUSTUS	transcript	14072562	14077392	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	stop_codon	14072559	14072561	.	-	0	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	CDS	14072562	14072787	0.97	-	1	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	exon	14072562	14072787	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	intron	14072788	14072960	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	CDS	14072961	14073428	0.98	-	1	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	exon	14072961	14073428	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	intron	14073429	14073512	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	CDS	14073513	14073732	1	-	2	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	exon	14073513	14073732	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	intron	14073733	14073911	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	CDS	14073912	14074035	1	-	0	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	exon	14073912	14074035	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	intron	14074036	14074226	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	CDS	14074227	14075052	1	-	1	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	exon	14074227	14075052	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	intron	14075053	14075214	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	CDS	14075215	14075551	1	-	2	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	exon	14075215	14075551	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	intron	14075552	14075939	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	CDS	14075940	14077392	0.96	-	0	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	exon	14075940	14077392	.	-	.	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
Ledus.S4	AUGUSTUS	start_codon	14077390	14077392	.	-	0	transcript_id "Ledus.S4G187700.t1"; gene_id "Ledus.S4G187700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6243.t1 is derived from g3686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29831422	29835746	.	+	.	Ledus.S1G366400
Ledus.S1	AUGUSTUS	transcript	29831422	29835746	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	start_codon	29831422	29831424	.	+	0	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29831422	29831485	0.9	+	0	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29831422	29831485	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29831486	29831559	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29831560	29831840	1	+	2	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29831560	29831840	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29831841	29831921	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29831922	29832196	0.97	+	0	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29831922	29832196	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29832197	29832298	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29832299	29832565	1	+	1	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29832299	29832565	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29832566	29832656	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29832657	29832889	1	+	1	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29832657	29832889	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29832890	29832976	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29832977	29833100	1	+	2	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29832977	29833100	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29833101	29833206	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29833207	29833278	1	+	1	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29833207	29833278	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29833279	29833364	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29833365	29833436	1	+	1	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29833365	29833436	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29833437	29833547	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29833548	29833625	1	+	1	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29833548	29833625	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29833626	29833707	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29833708	29833779	1	+	1	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29833708	29833779	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29833780	29833887	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29833888	29834174	1	+	1	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29833888	29834174	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29834175	29834268	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29834269	29834558	1	+	2	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29834269	29834558	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29834559	29834642	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29834643	29834769	1	+	0	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29834643	29834769	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29834770	29834859	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29834860	29834928	1	+	2	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29834860	29834928	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29834929	29835027	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29835028	29835229	1	+	2	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29835028	29835229	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29835230	29835328	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29835329	29835470	1	+	1	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29835329	29835470	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	intron	29835471	29835554	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	CDS	29835555	29835746	1	+	0	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	exon	29835555	29835746	.	+	.	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
Ledus.S1	AUGUSTUS	stop_codon	29835747	29835749	.	+	0	transcript_id "Ledus.S1G366400.t1"; gene_id "Ledus.S1G366400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg722.t1 is derived from g7583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4465186	4468724	.	+	.	Ledus.S2G060400
Ledus.S2	AUGUSTUS	transcript	4465186	4468724	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	start_codon	4465186	4465188	.	+	0	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4465186	4465284	0.93	+	0	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4465186	4465284	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4465285	4465507	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4465508	4465628	1	+	0	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4465508	4465628	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4465629	4465713	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4465714	4465824	1	+	2	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4465714	4465824	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4465825	4465966	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4465967	4466064	1	+	2	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4465967	4466064	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4466065	4466183	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4466184	4466270	1	+	0	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4466184	4466270	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4466271	4466410	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4466411	4466565	1	+	0	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4466411	4466565	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4466566	4466718	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4466719	4466791	1	+	1	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4466719	4466791	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4466792	4467008	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4467009	4467054	1	+	0	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4467009	4467054	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4467055	4467205	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4467206	4467285	0.61	+	2	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4467206	4467285	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4467286	4467421	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4467422	4467529	0.89	+	0	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4467422	4467529	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4467530	4467646	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4467647	4467706	0.81	+	0	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4467647	4467706	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4467707	4467846	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4467847	4467908	1	+	0	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4467847	4467908	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4467909	4468059	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4468060	4468381	0.97	+	1	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4468060	4468381	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	intron	4468382	4468499	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	CDS	4468500	4468724	0.97	+	0	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	exon	4468500	4468724	.	+	.	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
Ledus.S2	AUGUSTUS	stop_codon	4468725	4468727	.	+	0	transcript_id "Ledus.S2G060400.t1"; gene_id "Ledus.S2G060400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5592.t1 is derived from g3031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25302227	25303329	.	+	.	Ledus.S1G301300
Ledus.S1	AUGUSTUS	transcript	25302227	25303329	.	+	.	transcript_id "Ledus.S1G301300.t1"; gene_id "Ledus.S1G301300"
Ledus.S1	AUGUSTUS	start_codon	25302227	25302229	.	+	0	transcript_id "Ledus.S1G301300.t1"; gene_id "Ledus.S1G301300"
Ledus.S1	AUGUSTUS	CDS	25302227	25302560	0.96	+	0	transcript_id "Ledus.S1G301300.t1"; gene_id "Ledus.S1G301300"
Ledus.S1	AUGUSTUS	exon	25302227	25302560	.	+	.	transcript_id "Ledus.S1G301300.t1"; gene_id "Ledus.S1G301300"
Ledus.S1	AUGUSTUS	intron	25302561	25302644	.	+	.	transcript_id "Ledus.S1G301300.t1"; gene_id "Ledus.S1G301300"
Ledus.S1	AUGUSTUS	CDS	25302645	25302922	0.92	+	2	transcript_id "Ledus.S1G301300.t1"; gene_id "Ledus.S1G301300"
Ledus.S1	AUGUSTUS	exon	25302645	25302922	.	+	.	transcript_id "Ledus.S1G301300.t1"; gene_id "Ledus.S1G301300"
Ledus.S1	AUGUSTUS	intron	25302923	25303026	.	+	.	transcript_id "Ledus.S1G301300.t1"; gene_id "Ledus.S1G301300"
Ledus.S1	AUGUSTUS	CDS	25303027	25303329	0.88	+	0	transcript_id "Ledus.S1G301300.t1"; gene_id "Ledus.S1G301300"
Ledus.S1	AUGUSTUS	exon	25303027	25303329	.	+	.	transcript_id "Ledus.S1G301300.t1"; gene_id "Ledus.S1G301300"
Ledus.S1	AUGUSTUS	stop_codon	25303330	25303332	.	+	0	transcript_id "Ledus.S1G301300.t1"; gene_id "Ledus.S1G301300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13099.t1 is derived from g6909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5560421	5560768	.	+	.	Ledus.S6G016100
Ledus.S6	AUGUSTUS	transcript	5560421	5560768	.	+	.	transcript_id "Ledus.S6G016100.t1"; gene_id "Ledus.S6G016100"
Ledus.S6	AUGUSTUS	start_codon	5560421	5560423	.	+	0	transcript_id "Ledus.S6G016100.t1"; gene_id "Ledus.S6G016100"
Ledus.S6	AUGUSTUS	CDS	5560421	5560768	0.48	+	0	transcript_id "Ledus.S6G016100.t1"; gene_id "Ledus.S6G016100"
Ledus.S6	AUGUSTUS	exon	5560421	5560768	.	+	.	transcript_id "Ledus.S6G016100.t1"; gene_id "Ledus.S6G016100"
Ledus.S6	AUGUSTUS	stop_codon	5560769	5560771	.	+	0	transcript_id "Ledus.S6G016100.t1"; gene_id "Ledus.S6G016100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1150.t1 is derived from g8011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7943325	7945813	.	-	.	Ledus.S2G103200
Ledus.S2	AUGUSTUS	transcript	7943325	7945813	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	stop_codon	7943322	7943324	.	-	0	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	CDS	7943325	7943809	1	-	2	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	exon	7943325	7943809	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	intron	7943810	7943900	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	CDS	7943901	7944090	0.98	-	0	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	exon	7943901	7944090	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	intron	7944091	7944192	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	CDS	7944193	7944480	1	-	0	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	exon	7944193	7944480	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	intron	7944481	7944566	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	CDS	7944567	7944810	1	-	1	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	exon	7944567	7944810	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	intron	7944811	7944905	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	CDS	7944906	7945142	1	-	1	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	exon	7944906	7945142	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	intron	7945143	7945278	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	CDS	7945279	7945483	1	-	2	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	exon	7945279	7945483	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	intron	7945484	7945569	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	CDS	7945570	7945813	0.97	-	0	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	exon	7945570	7945813	.	-	.	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
Ledus.S2	AUGUSTUS	start_codon	7945811	7945813	.	-	0	transcript_id "Ledus.S2G103200.t1"; gene_id "Ledus.S2G103200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12446.t1 is derived from g6067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12039383	12040726	.	-	.	Ledus.S4G160200
Ledus.S4	AUGUSTUS	transcript	12039383	12040195	.	-	.	transcript_id "Ledus.S4G160200.t1"; gene_id "Ledus.S4G160200"
Ledus.S4	AUGUSTUS	stop_codon	12039380	12039382	.	-	0	transcript_id "Ledus.S4G160200.t1"; gene_id "Ledus.S4G160200"
Ledus.S4	AUGUSTUS	CDS	12039383	12040195	0.68	-	0	transcript_id "Ledus.S4G160200.t1"; gene_id "Ledus.S4G160200"
Ledus.S4	AUGUSTUS	exon	12039383	12040195	.	-	.	transcript_id "Ledus.S4G160200.t1"; gene_id "Ledus.S4G160200"
Ledus.S4	AUGUSTUS	start_codon	12040193	12040195	.	-	0	transcript_id "Ledus.S4G160200.t1"; gene_id "Ledus.S4G160200"
Ledus.S4	AUGUSTUS	transcript	12039383	12040726	.	-	.	transcript_id "Ledus.S4G160200.t2"; gene_id "Ledus.S4G160200"
Ledus.S4	AUGUSTUS	stop_codon	12039380	12039382	.	-	0	transcript_id "Ledus.S4G160200.t2"; gene_id "Ledus.S4G160200"
Ledus.S4	AUGUSTUS	CDS	12039383	12040726	0.29	-	0	transcript_id "Ledus.S4G160200.t2"; gene_id "Ledus.S4G160200"
Ledus.S4	AUGUSTUS	exon	12039383	12040726	.	-	.	transcript_id "Ledus.S4G160200.t2"; gene_id "Ledus.S4G160200"
Ledus.S4	AUGUSTUS	start_codon	12040724	12040726	.	-	0	transcript_id "Ledus.S4G160200.t2"; gene_id "Ledus.S4G160200"
# This transcript jg11408.t2 is derived from g5026.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11408.t3 is derived from g5026.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11408.t4 is derived from g5026.t5 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11408.t5 is derived from g5026.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11409.t1 is derived from g5027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4059136	4059429	.	-	.	Ledus.S4G056500
Ledus.S4	AUGUSTUS	transcript	4059136	4059429	.	-	.	transcript_id "Ledus.S4G056500.t1"; gene_id "Ledus.S4G056500"
Ledus.S4	AUGUSTUS	stop_codon	4059133	4059135	.	-	0	transcript_id "Ledus.S4G056500.t1"; gene_id "Ledus.S4G056500"
Ledus.S4	AUGUSTUS	CDS	4059136	4059222	1	-	0	transcript_id "Ledus.S4G056500.t1"; gene_id "Ledus.S4G056500"
Ledus.S4	AUGUSTUS	exon	4059136	4059222	.	-	.	transcript_id "Ledus.S4G056500.t1"; gene_id "Ledus.S4G056500"
Ledus.S4	AUGUSTUS	intron	4059223	4059306	.	-	.	transcript_id "Ledus.S4G056500.t1"; gene_id "Ledus.S4G056500"
Ledus.S4	AUGUSTUS	CDS	4059307	4059429	1	-	0	transcript_id "Ledus.S4G056500.t1"; gene_id "Ledus.S4G056500"
Ledus.S4	AUGUSTUS	exon	4059307	4059429	.	-	.	transcript_id "Ledus.S4G056500.t1"; gene_id "Ledus.S4G056500"
Ledus.S4	AUGUSTUS	start_codon	4059427	4059429	.	-	0	transcript_id "Ledus.S4G056500.t1"; gene_id "Ledus.S4G056500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10692.t1 is derived from g11722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17128214	17129936	.	-	.	Ledus.S3G216900
Ledus.S3	AUGUSTUS	transcript	17128214	17129936	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	stop_codon	17128211	17128213	.	-	0	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	CDS	17128214	17128354	0.56	-	0	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	exon	17128214	17128354	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	intron	17128355	17128474	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	CDS	17128475	17128606	0.64	-	0	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	exon	17128475	17128606	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	intron	17128607	17128709	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	CDS	17128710	17128949	1	-	0	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	exon	17128710	17128949	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	intron	17128950	17129054	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	CDS	17129055	17129207	1	-	0	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	exon	17129055	17129207	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	intron	17129208	17129326	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	CDS	17129327	17129431	1	-	0	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	exon	17129327	17129431	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	intron	17129432	17129535	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	CDS	17129536	17129619	1	-	0	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	exon	17129536	17129619	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	intron	17129620	17129751	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	CDS	17129752	17129829	1	-	0	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	exon	17129752	17129829	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	intron	17129830	17129924	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	CDS	17129925	17129936	1	-	0	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	exon	17129925	17129936	.	-	.	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
Ledus.S3	AUGUSTUS	start_codon	17129934	17129936	.	-	0	transcript_id "Ledus.S3G216900.t1"; gene_id "Ledus.S3G216900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg574.t1 is derived from g7435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3416914	3422555	.	-	.	Ledus.S2G045600
Ledus.S2	AUGUSTUS	transcript	3416914	3422555	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	stop_codon	3416911	3416913	.	-	0	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3416914	3417096	1	-	0	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3416914	3417096	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3417097	3417250	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3417251	3417483	1	-	2	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3417251	3417483	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3417484	3417578	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3417579	3418544	1	-	2	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3417579	3418544	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3418545	3418722	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3418723	3419002	1	-	0	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3418723	3419002	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3419003	3419157	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3419158	3419313	1	-	0	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3419158	3419313	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3419314	3419403	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3419404	3419472	1	-	0	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3419404	3419472	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3419473	3419586	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3419587	3419678	1	-	2	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3419587	3419678	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3419679	3419767	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3419768	3419855	1	-	0	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3419768	3419855	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3419856	3419990	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3419991	3420153	1	-	1	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3419991	3420153	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3420154	3420382	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3420383	3420462	1	-	0	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3420383	3420462	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3420463	3420574	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3420575	3420667	0.99	-	0	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3420575	3420667	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3420668	3420762	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3420763	3420834	1	-	0	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3420763	3420834	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3420835	3421002	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3421003	3421813	0.99	-	1	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3421003	3421813	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3421814	3422227	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3422228	3422268	1	-	0	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3422228	3422268	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	intron	3422269	3422501	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	CDS	3422502	3422555	1	-	0	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	exon	3422502	3422555	.	-	.	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
Ledus.S2	AUGUSTUS	start_codon	3422553	3422555	.	-	0	transcript_id "Ledus.S2G045600.t1"; gene_id "Ledus.S2G045600"
# This transcript jg5676.t2 is derived from g3115.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5677.t1 is derived from g3116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25767967	25769400	.	-	.	Ledus.S1G309800
Ledus.S1	AUGUSTUS	transcript	25767967	25769400	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	stop_codon	25767964	25767966	.	-	0	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	CDS	25767967	25768144	1	-	1	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	exon	25767967	25768144	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	intron	25768145	25768242	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	CDS	25768243	25768340	1	-	0	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	exon	25768243	25768340	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	intron	25768341	25768430	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	CDS	25768431	25768625	1	-	0	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	exon	25768431	25768625	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	intron	25768626	25768705	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	CDS	25768706	25768816	1	-	0	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	exon	25768706	25768816	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	intron	25768817	25768905	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	CDS	25768906	25768947	1	-	0	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	exon	25768906	25768947	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	intron	25768948	25769041	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	CDS	25769042	25769125	1	-	0	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	exon	25769042	25769125	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	intron	25769126	25769259	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	CDS	25769260	25769400	1	-	0	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	exon	25769260	25769400	.	-	.	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
Ledus.S1	AUGUSTUS	start_codon	25769398	25769400	.	-	0	transcript_id "Ledus.S1G309800.t1"; gene_id "Ledus.S1G309800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg245.t1 is derived from g7106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1106752	1110486	.	-	.	Ledus.S2G012700
Ledus.S2	AUGUSTUS	transcript	1106752	1110486	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	stop_codon	1106749	1106751	.	-	0	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1106752	1107143	0.97	-	2	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1106752	1107143	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1107144	1107256	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1107257	1107360	1	-	1	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1107257	1107360	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1107361	1107457	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1107458	1107583	1	-	1	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1107458	1107583	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1107584	1107769	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1107770	1107903	1	-	0	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1107770	1107903	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1107904	1108002	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1108003	1108140	1	-	0	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1108003	1108140	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1108141	1108226	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1108227	1108356	0.82	-	1	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1108227	1108356	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1108357	1108460	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1108461	1108715	0.62	-	1	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1108461	1108715	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1108716	1108881	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1108882	1109021	0.63	-	0	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1108882	1109021	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1109022	1109117	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1109118	1109183	1	-	0	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1109118	1109183	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1109184	1109286	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1109287	1109460	1	-	0	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1109287	1109460	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1109461	1109561	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1109562	1109627	0.79	-	0	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1109562	1109627	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1109628	1109760	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1109761	1110006	1	-	0	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1109761	1110006	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1110007	1110097	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1110098	1110307	1	-	0	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1110098	1110307	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	intron	1110308	1110417	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	CDS	1110418	1110486	0.72	-	0	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	exon	1110418	1110486	.	-	.	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
Ledus.S2	AUGUSTUS	start_codon	1110484	1110486	.	-	0	transcript_id "Ledus.S2G012700.t1"; gene_id "Ledus.S2G012700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6268.t1 is derived from g3711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30039900	30040142	.	+	.	Ledus.S1G368900
Ledus.S1	AUGUSTUS	transcript	30039900	30040142	.	+	.	transcript_id "Ledus.S1G368900.t1"; gene_id "Ledus.S1G368900"
Ledus.S1	AUGUSTUS	start_codon	30039900	30039902	.	+	0	transcript_id "Ledus.S1G368900.t1"; gene_id "Ledus.S1G368900"
Ledus.S1	AUGUSTUS	CDS	30039900	30040142	0.48	+	0	transcript_id "Ledus.S1G368900.t1"; gene_id "Ledus.S1G368900"
Ledus.S1	AUGUSTUS	exon	30039900	30040142	.	+	.	transcript_id "Ledus.S1G368900.t1"; gene_id "Ledus.S1G368900"
Ledus.S1	AUGUSTUS	stop_codon	30040143	30040145	.	+	0	transcript_id "Ledus.S1G368900.t1"; gene_id "Ledus.S1G368900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13087.t1 is derived from g6897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5303959	5304174	.	-	.	Ledus.S6G014900
Ledus.S6	AUGUSTUS	transcript	5303959	5304174	.	-	.	transcript_id "Ledus.S6G014900.t1"; gene_id "Ledus.S6G014900"
Ledus.S6	AUGUSTUS	stop_codon	5303956	5303958	.	-	0	transcript_id "Ledus.S6G014900.t1"; gene_id "Ledus.S6G014900"
Ledus.S6	AUGUSTUS	CDS	5303959	5304174	0.89	-	0	transcript_id "Ledus.S6G014900.t1"; gene_id "Ledus.S6G014900"
Ledus.S6	AUGUSTUS	exon	5303959	5304174	.	-	.	transcript_id "Ledus.S6G014900.t1"; gene_id "Ledus.S6G014900"
Ledus.S6	AUGUSTUS	start_codon	5304172	5304174	.	-	0	transcript_id "Ledus.S6G014900.t1"; gene_id "Ledus.S6G014900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6178.t1 is derived from g3621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29431355	29432983	.	+	.	Ledus.S1G359900
Ledus.S1	AUGUSTUS	transcript	29432312	29432983	.	+	.	transcript_id "Ledus.S1G359900.t1"; gene_id "Ledus.S1G359900"
Ledus.S1	AUGUSTUS	start_codon	29432312	29432314	.	+	0	transcript_id "Ledus.S1G359900.t1"; gene_id "Ledus.S1G359900"
Ledus.S1	AUGUSTUS	CDS	29432312	29432983	0.63	+	0	transcript_id "Ledus.S1G359900.t1"; gene_id "Ledus.S1G359900"
Ledus.S1	AUGUSTUS	exon	29432312	29432983	.	+	.	transcript_id "Ledus.S1G359900.t1"; gene_id "Ledus.S1G359900"
Ledus.S1	AUGUSTUS	stop_codon	29432984	29432986	.	+	0	transcript_id "Ledus.S1G359900.t1"; gene_id "Ledus.S1G359900"
Ledus.S1	AUGUSTUS	transcript	29431355	29432983	.	+	.	transcript_id "Ledus.S1G359900.t2"; gene_id "Ledus.S1G359900"
Ledus.S1	AUGUSTUS	start_codon	29431355	29431357	.	+	0	transcript_id "Ledus.S1G359900.t2"; gene_id "Ledus.S1G359900"
Ledus.S1	AUGUSTUS	CDS	29431355	29432983	0.59	+	0	transcript_id "Ledus.S1G359900.t2"; gene_id "Ledus.S1G359900"
Ledus.S1	AUGUSTUS	exon	29431355	29432983	.	+	.	transcript_id "Ledus.S1G359900.t2"; gene_id "Ledus.S1G359900"
Ledus.S1	AUGUSTUS	stop_codon	29432984	29432986	.	+	0	transcript_id "Ledus.S1G359900.t2"; gene_id "Ledus.S1G359900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9872.t1 is derived from g10902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10783304	10785624	.	+	.	Ledus.S3G134900
Ledus.S3	AUGUSTUS	transcript	10783304	10785624	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	start_codon	10783304	10783306	.	+	0	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	CDS	10783304	10783447	0.83	+	0	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	exon	10783304	10783447	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	intron	10783448	10783654	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	CDS	10783655	10783670	0.99	+	0	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	exon	10783655	10783670	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	intron	10783671	10783810	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	CDS	10783811	10783872	0.99	+	2	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	exon	10783811	10783872	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	intron	10783873	10783997	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	CDS	10783998	10784059	0.98	+	0	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	exon	10783998	10784059	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	intron	10784060	10784176	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	CDS	10784177	10784231	1	+	1	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	exon	10784177	10784231	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	intron	10784232	10784400	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	CDS	10784401	10784499	1	+	0	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	exon	10784401	10784499	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	intron	10784500	10784642	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	CDS	10784643	10784729	1	+	0	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	exon	10784643	10784729	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	intron	10784730	10784900	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	CDS	10784901	10785017	0.97	+	0	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	exon	10784901	10785017	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	intron	10785018	10785123	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	CDS	10785124	10785216	0.89	+	0	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	exon	10785124	10785216	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	intron	10785217	10785317	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	CDS	10785318	10785348	1	+	0	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	exon	10785318	10785348	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	intron	10785349	10785436	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	CDS	10785437	10785624	0.78	+	2	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	exon	10785437	10785624	.	+	.	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
Ledus.S3	AUGUSTUS	stop_codon	10785625	10785627	.	+	0	transcript_id "Ledus.S3G134900.t1"; gene_id "Ledus.S3G134900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7475.t1 is derived from g12146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3039369	3041265	.	-	.	Ledus.S5G025300
Ledus.S5	AUGUSTUS	transcript	3039369	3041265	.	-	.	transcript_id "Ledus.S5G025300.t1"; gene_id "Ledus.S5G025300"
Ledus.S5	AUGUSTUS	stop_codon	3039366	3039368	.	-	0	transcript_id "Ledus.S5G025300.t1"; gene_id "Ledus.S5G025300"
Ledus.S5	AUGUSTUS	CDS	3039369	3040499	1	-	0	transcript_id "Ledus.S5G025300.t1"; gene_id "Ledus.S5G025300"
Ledus.S5	AUGUSTUS	exon	3039369	3040499	.	-	.	transcript_id "Ledus.S5G025300.t1"; gene_id "Ledus.S5G025300"
Ledus.S5	AUGUSTUS	intron	3040500	3040589	.	-	.	transcript_id "Ledus.S5G025300.t1"; gene_id "Ledus.S5G025300"
Ledus.S5	AUGUSTUS	CDS	3040590	3040831	1	-	2	transcript_id "Ledus.S5G025300.t1"; gene_id "Ledus.S5G025300"
Ledus.S5	AUGUSTUS	exon	3040590	3040831	.	-	.	transcript_id "Ledus.S5G025300.t1"; gene_id "Ledus.S5G025300"
Ledus.S5	AUGUSTUS	intron	3040832	3040982	.	-	.	transcript_id "Ledus.S5G025300.t1"; gene_id "Ledus.S5G025300"
Ledus.S5	AUGUSTUS	CDS	3040983	3041265	0.42	-	0	transcript_id "Ledus.S5G025300.t1"; gene_id "Ledus.S5G025300"
Ledus.S5	AUGUSTUS	exon	3040983	3041265	.	-	.	transcript_id "Ledus.S5G025300.t1"; gene_id "Ledus.S5G025300"
Ledus.S5	AUGUSTUS	start_codon	3041263	3041265	.	-	0	transcript_id "Ledus.S5G025300.t1"; gene_id "Ledus.S5G025300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2296.t1 is derived from g9159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17067371	17068965	.	+	.	Ledus.S2G217800
Ledus.S2	AUGUSTUS	transcript	17067371	17068965	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	start_codon	17067371	17067373	.	+	0	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	CDS	17067371	17067465	0.59	+	0	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	exon	17067371	17067465	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	intron	17067466	17067613	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	CDS	17067614	17067721	1	+	1	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	exon	17067614	17067721	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	intron	17067722	17067819	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	CDS	17067820	17067901	1	+	1	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	exon	17067820	17067901	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	intron	17067902	17068013	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	CDS	17068014	17068143	0.98	+	0	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	exon	17068014	17068143	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	intron	17068144	17068380	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	CDS	17068381	17068523	1	+	2	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	exon	17068381	17068523	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	intron	17068524	17068686	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	CDS	17068687	17068773	0.99	+	0	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	exon	17068687	17068773	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	intron	17068774	17068893	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	CDS	17068894	17068965	0.99	+	0	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	exon	17068894	17068965	.	+	.	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
Ledus.S2	AUGUSTUS	stop_codon	17068966	17068968	.	+	0	transcript_id "Ledus.S2G217800.t1"; gene_id "Ledus.S2G217800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7958.t1 is derived from g12629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8142468	8143777	.	-	.	Ledus.S5G073600
Ledus.S5	AUGUSTUS	transcript	8142468	8143777	.	-	.	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	stop_codon	8142465	8142467	.	-	0	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	CDS	8142468	8142494	0.95	-	0	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	exon	8142468	8142494	.	-	.	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	intron	8142495	8142589	.	-	.	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	CDS	8142590	8142632	0.8	-	1	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	exon	8142590	8142632	.	-	.	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	intron	8142633	8142851	.	-	.	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	CDS	8142852	8142972	0.79	-	2	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	exon	8142852	8142972	.	-	.	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	intron	8142973	8143115	.	-	.	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	CDS	8143116	8143171	0.98	-	1	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	exon	8143116	8143171	.	-	.	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	intron	8143172	8143718	.	-	.	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	CDS	8143719	8143777	0.5	-	0	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	exon	8143719	8143777	.	-	.	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
Ledus.S5	AUGUSTUS	start_codon	8143775	8143777	.	-	0	transcript_id "Ledus.S5G073600.t1"; gene_id "Ledus.S5G073600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8727.t1 is derived from g9757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1605945	1607895	.	+	.	Ledus.S3G020400
Ledus.S3	AUGUSTUS	transcript	1605945	1607895	.	+	.	transcript_id "Ledus.S3G020400.t1"; gene_id "Ledus.S3G020400"
Ledus.S3	AUGUSTUS	start_codon	1605945	1605947	.	+	0	transcript_id "Ledus.S3G020400.t1"; gene_id "Ledus.S3G020400"
Ledus.S3	AUGUSTUS	CDS	1605945	1606213	0.6	+	0	transcript_id "Ledus.S3G020400.t1"; gene_id "Ledus.S3G020400"
Ledus.S3	AUGUSTUS	exon	1605945	1606213	.	+	.	transcript_id "Ledus.S3G020400.t1"; gene_id "Ledus.S3G020400"
Ledus.S3	AUGUSTUS	intron	1606214	1606357	.	+	.	transcript_id "Ledus.S3G020400.t1"; gene_id "Ledus.S3G020400"
Ledus.S3	AUGUSTUS	CDS	1606358	1606628	0.41	+	1	transcript_id "Ledus.S3G020400.t1"; gene_id "Ledus.S3G020400"
Ledus.S3	AUGUSTUS	exon	1606358	1606628	.	+	.	transcript_id "Ledus.S3G020400.t1"; gene_id "Ledus.S3G020400"
Ledus.S3	AUGUSTUS	intron	1606629	1606791	.	+	.	transcript_id "Ledus.S3G020400.t1"; gene_id "Ledus.S3G020400"
Ledus.S3	AUGUSTUS	CDS	1606792	1607895	0.3	+	0	transcript_id "Ledus.S3G020400.t1"; gene_id "Ledus.S3G020400"
Ledus.S3	AUGUSTUS	exon	1606792	1607895	.	+	.	transcript_id "Ledus.S3G020400.t1"; gene_id "Ledus.S3G020400"
Ledus.S3	AUGUSTUS	stop_codon	1607896	1607898	.	+	0	transcript_id "Ledus.S3G020400.t1"; gene_id "Ledus.S3G020400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8128.t1 is derived from g12799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9243996	9246940	.	-	.	Ledus.S5G090600
Ledus.S5	AUGUSTUS	transcript	9243996	9246940	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	stop_codon	9243993	9243995	.	-	0	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	CDS	9243996	9244018	0.96	-	2	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	exon	9243996	9244018	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	intron	9244019	9244422	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	CDS	9244423	9244457	0.57	-	1	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	exon	9244423	9244457	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	intron	9244458	9244559	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	CDS	9244560	9244664	0.36	-	1	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	exon	9244560	9244664	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	intron	9244665	9245049	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	CDS	9245050	9245576	0.36	-	0	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	exon	9245050	9245576	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	intron	9245577	9245660	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	CDS	9245661	9245846	1	-	0	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	exon	9245661	9245846	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	intron	9245847	9245934	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	CDS	9245935	9246152	1	-	2	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	exon	9245935	9246152	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	intron	9246153	9246232	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	CDS	9246233	9246352	1	-	2	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	exon	9246233	9246352	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	intron	9246353	9246441	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	CDS	9246442	9246574	1	-	0	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	exon	9246442	9246574	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	intron	9246575	9246670	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	CDS	9246671	9246940	0.96	-	0	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	exon	9246671	9246940	.	-	.	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
Ledus.S5	AUGUSTUS	start_codon	9246938	9246940	.	-	0	transcript_id "Ledus.S5G090600.t1"; gene_id "Ledus.S5G090600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10016.t1 is derived from g11046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11878628	11879887	.	-	.	Ledus.S3G149300
Ledus.S3	AUGUSTUS	transcript	11878628	11879887	.	-	.	transcript_id "Ledus.S3G149300.t1"; gene_id "Ledus.S3G149300"
Ledus.S3	AUGUSTUS	stop_codon	11878625	11878627	.	-	0	transcript_id "Ledus.S3G149300.t1"; gene_id "Ledus.S3G149300"
Ledus.S3	AUGUSTUS	CDS	11878628	11879887	0.89	-	0	transcript_id "Ledus.S3G149300.t1"; gene_id "Ledus.S3G149300"
Ledus.S3	AUGUSTUS	exon	11878628	11879887	.	-	.	transcript_id "Ledus.S3G149300.t1"; gene_id "Ledus.S3G149300"
Ledus.S3	AUGUSTUS	start_codon	11879885	11879887	.	-	0	transcript_id "Ledus.S3G149300.t1"; gene_id "Ledus.S3G149300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg978.t1 is derived from g7839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6442758	6444473	.	+	.	Ledus.S2G086000
Ledus.S2	AUGUSTUS	transcript	6442758	6444473	.	+	.	transcript_id "Ledus.S2G086000.t1"; gene_id "Ledus.S2G086000"
Ledus.S2	AUGUSTUS	start_codon	6442758	6442760	.	+	0	transcript_id "Ledus.S2G086000.t1"; gene_id "Ledus.S2G086000"
Ledus.S2	AUGUSTUS	CDS	6442758	6444473	1	+	0	transcript_id "Ledus.S2G086000.t1"; gene_id "Ledus.S2G086000"
Ledus.S2	AUGUSTUS	exon	6442758	6444473	.	+	.	transcript_id "Ledus.S2G086000.t1"; gene_id "Ledus.S2G086000"
Ledus.S2	AUGUSTUS	stop_codon	6444474	6444476	.	+	0	transcript_id "Ledus.S2G086000.t1"; gene_id "Ledus.S2G086000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12903.t1 is derived from g4395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	196661	198415	.	-	.	Ledus.C9G001100
Ledus.C9	AUGUSTUS	transcript	196661	198415	.	-	.	transcript_id "Ledus.C9G001100.t1"; gene_id "Ledus.C9G001100"
Ledus.C9	AUGUSTUS	stop_codon	196658	196660	.	-	0	transcript_id "Ledus.C9G001100.t1"; gene_id "Ledus.C9G001100"
Ledus.C9	AUGUSTUS	CDS	196661	198415	0.42	-	0	transcript_id "Ledus.C9G001100.t1"; gene_id "Ledus.C9G001100"
Ledus.C9	AUGUSTUS	exon	196661	198415	.	-	.	transcript_id "Ledus.C9G001100.t1"; gene_id "Ledus.C9G001100"
Ledus.C9	AUGUSTUS	start_codon	198413	198415	.	-	0	transcript_id "Ledus.C9G001100.t1"; gene_id "Ledus.C9G001100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12148.t1 is derived from g5767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9938947	9940558	.	-	.	Ledus.S4G130400
Ledus.S4	AUGUSTUS	transcript	9938947	9940558	.	-	.	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	stop_codon	9938944	9938946	.	-	0	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	CDS	9938947	9939219	0.96	-	0	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	exon	9938947	9939219	.	-	.	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	intron	9939220	9939286	.	-	.	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	CDS	9939287	9939466	0.99	-	0	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	exon	9939287	9939466	.	-	.	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	intron	9939467	9939565	.	-	.	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	CDS	9939566	9939616	1	-	0	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	exon	9939566	9939616	.	-	.	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	intron	9939617	9940027	.	-	.	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	CDS	9940028	9940087	1	-	0	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	exon	9940028	9940087	.	-	.	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	intron	9940088	9940177	.	-	.	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	CDS	9940178	9940280	1	-	1	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	exon	9940178	9940280	.	-	.	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	intron	9940281	9940358	.	-	.	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	CDS	9940359	9940558	0.99	-	0	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	exon	9940359	9940558	.	-	.	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	start_codon	9940556	9940558	.	-	0	transcript_id "Ledus.S4G130400.t1"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	transcript	9938947	9940558	.	-	.	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	stop_codon	9938944	9938946	.	-	0	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	CDS	9938947	9939219	0.96	-	0	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	exon	9938947	9939219	.	-	.	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	intron	9939220	9939286	.	-	.	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	CDS	9939287	9939466	0.96	-	0	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	exon	9939287	9939466	.	-	.	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	intron	9939467	9939565	.	-	.	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	CDS	9939566	9939616	0.99	-	0	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	exon	9939566	9939616	.	-	.	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	intron	9939617	9940027	.	-	.	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	CDS	9940028	9940087	0.99	-	0	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	exon	9940028	9940087	.	-	.	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	intron	9940088	9940177	.	-	.	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	CDS	9940178	9940283	1	-	1	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	exon	9940178	9940283	.	-	.	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	intron	9940284	9940358	.	-	.	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	CDS	9940359	9940558	0.96	-	0	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	exon	9940359	9940558	.	-	.	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
Ledus.S4	AUGUSTUS	start_codon	9940556	9940558	.	-	0	transcript_id "Ledus.S4G130400.t2"; gene_id "Ledus.S4G130400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3793.t1 is derived from g1229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12204600	12204960	.	-	.	Ledus.S1G121400
Ledus.S1	AUGUSTUS	transcript	12204600	12204960	.	-	.	transcript_id "Ledus.S1G121400.t1"; gene_id "Ledus.S1G121400"
Ledus.S1	AUGUSTUS	stop_codon	12204597	12204599	.	-	0	transcript_id "Ledus.S1G121400.t1"; gene_id "Ledus.S1G121400"
Ledus.S1	AUGUSTUS	CDS	12204600	12204624	0.7	-	1	transcript_id "Ledus.S1G121400.t1"; gene_id "Ledus.S1G121400"
Ledus.S1	AUGUSTUS	exon	12204600	12204624	.	-	.	transcript_id "Ledus.S1G121400.t1"; gene_id "Ledus.S1G121400"
Ledus.S1	AUGUSTUS	intron	12204625	12204718	.	-	.	transcript_id "Ledus.S1G121400.t1"; gene_id "Ledus.S1G121400"
Ledus.S1	AUGUSTUS	CDS	12204719	12204960	0.94	-	0	transcript_id "Ledus.S1G121400.t1"; gene_id "Ledus.S1G121400"
Ledus.S1	AUGUSTUS	exon	12204719	12204960	.	-	.	transcript_id "Ledus.S1G121400.t1"; gene_id "Ledus.S1G121400"
Ledus.S1	AUGUSTUS	start_codon	12204958	12204960	.	-	0	transcript_id "Ledus.S1G121400.t1"; gene_id "Ledus.S1G121400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6698.t1 is derived from g4141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33351034	33353208	.	-	.	Ledus.S1G411900
Ledus.S1	AUGUSTUS	transcript	33351034	33353208	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	stop_codon	33351031	33351033	.	-	0	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	CDS	33351034	33351051	0.78	-	0	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	exon	33351034	33351051	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	intron	33351052	33351283	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	CDS	33351284	33351388	0.6	-	0	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	exon	33351284	33351388	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	intron	33351389	33351619	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	CDS	33351620	33351714	0.63	-	2	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	exon	33351620	33351714	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	intron	33351715	33351811	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	CDS	33351812	33352264	1	-	2	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	exon	33351812	33352264	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	intron	33352265	33352367	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	CDS	33352368	33352618	0.9	-	1	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	exon	33352368	33352618	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	intron	33352619	33352719	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	CDS	33352720	33352969	0.99	-	2	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	exon	33352720	33352969	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	intron	33352970	33353045	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	CDS	33353046	33353208	0.76	-	0	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	exon	33353046	33353208	.	-	.	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
Ledus.S1	AUGUSTUS	start_codon	33353206	33353208	.	-	0	transcript_id "Ledus.S1G411900.t1"; gene_id "Ledus.S1G411900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4295.t1 is derived from g1731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16088532	16090010	.	+	.	Ledus.S1G171600
Ledus.S1	AUGUSTUS	transcript	16088532	16090010	.	+	.	transcript_id "Ledus.S1G171600.t1"; gene_id "Ledus.S1G171600"
Ledus.S1	AUGUSTUS	start_codon	16088532	16088534	.	+	0	transcript_id "Ledus.S1G171600.t1"; gene_id "Ledus.S1G171600"
Ledus.S1	AUGUSTUS	CDS	16088532	16090010	0.96	+	0	transcript_id "Ledus.S1G171600.t1"; gene_id "Ledus.S1G171600"
Ledus.S1	AUGUSTUS	exon	16088532	16090010	.	+	.	transcript_id "Ledus.S1G171600.t1"; gene_id "Ledus.S1G171600"
Ledus.S1	AUGUSTUS	stop_codon	16090011	16090013	.	+	0	transcript_id "Ledus.S1G171600.t1"; gene_id "Ledus.S1G171600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3.t1 is derived from g11866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C14	AUGUSTUS	gene	81721	81996	.	+	.	Ledus.C14G000200
Ledus.C14	AUGUSTUS	transcript	81721	81996	.	+	.	transcript_id "Ledus.C14G000200.t1"; gene_id "Ledus.C14G000200"
Ledus.C14	AUGUSTUS	start_codon	81721	81723	.	+	0	transcript_id "Ledus.C14G000200.t1"; gene_id "Ledus.C14G000200"
Ledus.C14	AUGUSTUS	CDS	81721	81996	0.91	+	0	transcript_id "Ledus.C14G000200.t1"; gene_id "Ledus.C14G000200"
Ledus.C14	AUGUSTUS	exon	81721	81996	.	+	.	transcript_id "Ledus.C14G000200.t1"; gene_id "Ledus.C14G000200"
Ledus.C14	AUGUSTUS	stop_codon	81997	81999	.	+	0	transcript_id "Ledus.C14G000200.t1"; gene_id "Ledus.C14G000200"
# This transcript jg11028.t2 is derived from g4646.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11028.t3 is derived from g4646.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11028.t4 is derived from g4646.t5 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11028.t5 is derived from g4646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11029.t1 is derived from g4647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1292086	1297077	.	-	.	Ledus.S4G018500
Ledus.S4	AUGUSTUS	transcript	1292086	1297077	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	stop_codon	1292083	1292085	.	-	0	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1292086	1292115	0.98	-	0	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1292086	1292115	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1292116	1292205	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1292206	1292322	0.98	-	0	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1292206	1292322	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1292323	1292416	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1292417	1292541	0.77	-	2	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1292417	1292541	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1292542	1292636	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1292637	1292978	1	-	2	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1292637	1292978	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1292979	1293106	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1293107	1293257	1	-	0	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1293107	1293257	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1293258	1293357	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1293358	1293599	1	-	2	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1293358	1293599	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1293600	1293780	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1293781	1294116	0.98	-	2	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1293781	1294116	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1294117	1294273	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1294274	1294424	1	-	0	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1294274	1294424	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1294425	1294526	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1294527	1294774	0.67	-	2	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1294527	1294774	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1294775	1294897	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1294898	1295091	0.46	-	1	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1294898	1295091	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1295092	1295193	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1295194	1295230	0.53	-	2	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1295194	1295230	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1295231	1295352	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1295353	1295494	1	-	0	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1295353	1295494	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1295495	1295581	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1295582	1296100	1	-	0	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1295582	1296100	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1296101	1296285	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1296286	1296537	1	-	0	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1296286	1296537	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1296538	1296625	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1296626	1296795	0.98	-	2	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1296626	1296795	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	intron	1296796	1296869	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	CDS	1296870	1297077	0.73	-	0	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	exon	1296870	1297077	.	-	.	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
Ledus.S4	AUGUSTUS	start_codon	1297075	1297077	.	-	0	transcript_id "Ledus.S4G018500.t1"; gene_id "Ledus.S4G018500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6109.t1 is derived from g3552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28943687	28945401	.	+	.	Ledus.S1G353000
Ledus.S1	AUGUSTUS	transcript	28943687	28945401	.	+	.	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	start_codon	28943687	28943689	.	+	0	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	CDS	28943687	28944172	0.79	+	0	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	exon	28943687	28944172	.	+	.	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	intron	28944173	28944248	.	+	.	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	CDS	28944249	28944419	1	+	0	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	exon	28944249	28944419	.	+	.	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	intron	28944420	28944525	.	+	.	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	CDS	28944526	28944652	1	+	0	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	exon	28944526	28944652	.	+	.	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	intron	28944653	28944805	.	+	.	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	CDS	28944806	28944897	1	+	2	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	exon	28944806	28944897	.	+	.	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	intron	28944898	28944980	.	+	.	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	CDS	28944981	28945121	0.97	+	0	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	exon	28944981	28945121	.	+	.	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	intron	28945122	28945236	.	+	.	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	CDS	28945237	28945401	0.69	+	0	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	exon	28945237	28945401	.	+	.	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
Ledus.S1	AUGUSTUS	stop_codon	28945402	28945404	.	+	0	transcript_id "Ledus.S1G353000.t1"; gene_id "Ledus.S1G353000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3709.t1 is derived from g1145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11079966	11080247	.	-	.	Ledus.S1G113000
Ledus.S1	AUGUSTUS	transcript	11079966	11080247	.	-	.	transcript_id "Ledus.S1G113000.t1"; gene_id "Ledus.S1G113000"
Ledus.S1	AUGUSTUS	stop_codon	11079963	11079965	.	-	0	transcript_id "Ledus.S1G113000.t1"; gene_id "Ledus.S1G113000"
Ledus.S1	AUGUSTUS	CDS	11079966	11080247	0.58	-	0	transcript_id "Ledus.S1G113000.t1"; gene_id "Ledus.S1G113000"
Ledus.S1	AUGUSTUS	exon	11079966	11080247	.	-	.	transcript_id "Ledus.S1G113000.t1"; gene_id "Ledus.S1G113000"
Ledus.S1	AUGUSTUS	start_codon	11080245	11080247	.	-	0	transcript_id "Ledus.S1G113000.t1"; gene_id "Ledus.S1G113000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5322.t1 is derived from g2761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23304141	23306295	.	-	.	Ledus.S1G274300
Ledus.S1	AUGUSTUS	transcript	23304141	23306295	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	stop_codon	23304138	23304140	.	-	0	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	CDS	23304141	23304296	0.97	-	0	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	exon	23304141	23304296	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	intron	23304297	23304548	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	CDS	23304549	23304652	0.99	-	2	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	exon	23304549	23304652	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	intron	23304653	23304740	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	CDS	23304741	23304956	1	-	2	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	exon	23304741	23304956	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	intron	23304957	23305057	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	CDS	23305058	23305223	1	-	0	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	exon	23305058	23305223	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	intron	23305224	23305301	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	CDS	23305302	23305374	0.84	-	1	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	exon	23305302	23305374	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	intron	23305375	23305644	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	CDS	23305645	23305771	0.89	-	2	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	exon	23305645	23305771	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	intron	23305772	23305856	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	CDS	23305857	23306295	1	-	0	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	exon	23305857	23306295	.	-	.	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
Ledus.S1	AUGUSTUS	start_codon	23306293	23306295	.	-	0	transcript_id "Ledus.S1G274300.t1"; gene_id "Ledus.S1G274300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4594.t1 is derived from g2031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17983910	17984770	.	-	.	Ledus.S1G201500
Ledus.S1	AUGUSTUS	transcript	17983910	17984770	.	-	.	transcript_id "Ledus.S1G201500.t1"; gene_id "Ledus.S1G201500"
Ledus.S1	AUGUSTUS	stop_codon	17983907	17983909	.	-	0	transcript_id "Ledus.S1G201500.t1"; gene_id "Ledus.S1G201500"
Ledus.S1	AUGUSTUS	CDS	17983910	17984770	1	-	0	transcript_id "Ledus.S1G201500.t1"; gene_id "Ledus.S1G201500"
Ledus.S1	AUGUSTUS	exon	17983910	17984770	.	-	.	transcript_id "Ledus.S1G201500.t1"; gene_id "Ledus.S1G201500"
Ledus.S1	AUGUSTUS	start_codon	17984768	17984770	.	-	0	transcript_id "Ledus.S1G201500.t1"; gene_id "Ledus.S1G201500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3855.t1 is derived from g1291.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13192204	13194844	.	+	.	Ledus.S1G127600
Ledus.S1	AUGUSTUS	transcript	13192268	13194844	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	start_codon	13192268	13192270	.	+	0	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13192268	13192301	0.99	+	0	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13192268	13192301	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13192302	13192379	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13192380	13192679	0.85	+	2	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13192380	13192679	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13192680	13192883	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13192884	13193083	0.99	+	2	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13192884	13193083	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13193084	13193296	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13193297	13193647	0.98	+	0	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13193297	13193647	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13193648	13193740	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13193741	13193941	0.95	+	0	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13193741	13193941	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13193942	13194042	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13194043	13194113	0.97	+	0	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13194043	13194113	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13194114	13194278	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13194279	13194412	0.99	+	1	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13194279	13194412	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13194413	13194524	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13194525	13194844	1	+	2	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13194525	13194844	.	+	.	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	stop_codon	13194845	13194847	.	+	0	transcript_id "Ledus.S1G127600.t1"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	transcript	13192204	13194844	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	start_codon	13192204	13192206	.	+	0	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13192204	13192301	0.91	+	0	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13192204	13192301	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13192302	13192359	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13192360	13192679	0.8	+	1	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13192360	13192679	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13192680	13192883	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13192884	13193083	0.99	+	2	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13192884	13193083	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13193084	13193296	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13193297	13193647	0.99	+	0	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13193297	13193647	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13193648	13193740	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13193741	13193941	0.93	+	0	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13193741	13193941	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13193942	13194042	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13194043	13194113	0.95	+	0	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13194043	13194113	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13194114	13194278	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13194279	13194412	0.98	+	1	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13194279	13194412	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	intron	13194413	13194524	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	CDS	13194525	13194844	1	+	2	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	exon	13194525	13194844	.	+	.	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
Ledus.S1	AUGUSTUS	stop_codon	13194845	13194847	.	+	0	transcript_id "Ledus.S1G127600.t2"; gene_id "Ledus.S1G127600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9197.t1 is derived from g10227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5317648	5318670	.	-	.	Ledus.S3G067400
Ledus.S3	AUGUSTUS	transcript	5317648	5318670	.	-	.	transcript_id "Ledus.S3G067400.t1"; gene_id "Ledus.S3G067400"
Ledus.S3	AUGUSTUS	stop_codon	5317645	5317647	.	-	0	transcript_id "Ledus.S3G067400.t1"; gene_id "Ledus.S3G067400"
Ledus.S3	AUGUSTUS	CDS	5317648	5318670	0.97	-	0	transcript_id "Ledus.S3G067400.t1"; gene_id "Ledus.S3G067400"
Ledus.S3	AUGUSTUS	exon	5317648	5318670	.	-	.	transcript_id "Ledus.S3G067400.t1"; gene_id "Ledus.S3G067400"
Ledus.S3	AUGUSTUS	start_codon	5318668	5318670	.	-	0	transcript_id "Ledus.S3G067400.t1"; gene_id "Ledus.S3G067400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2795.t1 is derived from g229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3825879	3826635	.	-	.	Ledus.S1G021600
Ledus.S1	AUGUSTUS	transcript	3825879	3826635	.	-	.	transcript_id "Ledus.S1G021600.t1"; gene_id "Ledus.S1G021600"
Ledus.S1	AUGUSTUS	stop_codon	3825876	3825878	.	-	0	transcript_id "Ledus.S1G021600.t1"; gene_id "Ledus.S1G021600"
Ledus.S1	AUGUSTUS	CDS	3825879	3826289	1	-	0	transcript_id "Ledus.S1G021600.t1"; gene_id "Ledus.S1G021600"
Ledus.S1	AUGUSTUS	exon	3825879	3826289	.	-	.	transcript_id "Ledus.S1G021600.t1"; gene_id "Ledus.S1G021600"
Ledus.S1	AUGUSTUS	intron	3826290	3826380	.	-	.	transcript_id "Ledus.S1G021600.t1"; gene_id "Ledus.S1G021600"
Ledus.S1	AUGUSTUS	CDS	3826381	3826635	0.98	-	0	transcript_id "Ledus.S1G021600.t1"; gene_id "Ledus.S1G021600"
Ledus.S1	AUGUSTUS	exon	3826381	3826635	.	-	.	transcript_id "Ledus.S1G021600.t1"; gene_id "Ledus.S1G021600"
Ledus.S1	AUGUSTUS	start_codon	3826633	3826635	.	-	0	transcript_id "Ledus.S1G021600.t1"; gene_id "Ledus.S1G021600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2432.t1 is derived from g9295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18094969	18095397	.	+	.	Ledus.S2G231400
Ledus.S2	AUGUSTUS	transcript	18094969	18095397	.	+	.	transcript_id "Ledus.S2G231400.t1"; gene_id "Ledus.S2G231400"
Ledus.S2	AUGUSTUS	start_codon	18094969	18094971	.	+	0	transcript_id "Ledus.S2G231400.t1"; gene_id "Ledus.S2G231400"
Ledus.S2	AUGUSTUS	CDS	18094969	18095397	0.91	+	0	transcript_id "Ledus.S2G231400.t1"; gene_id "Ledus.S2G231400"
Ledus.S2	AUGUSTUS	exon	18094969	18095397	.	+	.	transcript_id "Ledus.S2G231400.t1"; gene_id "Ledus.S2G231400"
Ledus.S2	AUGUSTUS	stop_codon	18095398	18095400	.	+	0	transcript_id "Ledus.S2G231400.t1"; gene_id "Ledus.S2G231400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6247.t1 is derived from g3690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29882053	29887623	.	-	.	Ledus.S1G366800
Ledus.S1	AUGUSTUS	transcript	29882053	29887623	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	stop_codon	29882050	29882052	.	-	0	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	CDS	29882053	29882120	0.9	-	2	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	exon	29882053	29882120	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	intron	29882121	29882402	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	CDS	29882403	29882487	0.85	-	0	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	exon	29882403	29882487	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	intron	29882488	29882566	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	CDS	29882567	29882670	0.5	-	2	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	exon	29882567	29882670	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	intron	29882671	29883223	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	CDS	29883224	29883283	0.73	-	2	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	exon	29883224	29883283	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	intron	29883284	29883516	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	CDS	29883517	29883691	0.82	-	0	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	exon	29883517	29883691	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	intron	29883692	29883807	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	CDS	29883808	29884002	1	-	0	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	exon	29883808	29884002	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	intron	29884003	29884094	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	CDS	29884095	29884205	1	-	0	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	exon	29884095	29884205	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	intron	29884206	29884295	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	CDS	29884296	29884508	1	-	0	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	exon	29884296	29884508	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	intron	29884509	29884635	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	CDS	29884636	29884743	0.99	-	0	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	exon	29884636	29884743	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	intron	29884744	29884849	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	CDS	29884850	29884991	0.97	-	1	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	exon	29884850	29884991	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	intron	29884992	29885111	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	CDS	29885112	29886787	1	-	0	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	exon	29885112	29886787	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	intron	29886788	29886939	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	CDS	29886940	29887623	0.45	-	0	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	exon	29886940	29887623	.	-	.	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
Ledus.S1	AUGUSTUS	start_codon	29887621	29887623	.	-	0	transcript_id "Ledus.S1G366800.t1"; gene_id "Ledus.S1G366800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6292.t1 is derived from g3735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30157379	30158578	.	+	.	Ledus.S1G371300
Ledus.S1	AUGUSTUS	transcript	30157379	30158578	.	+	.	transcript_id "Ledus.S1G371300.t1"; gene_id "Ledus.S1G371300"
Ledus.S1	AUGUSTUS	start_codon	30157379	30157381	.	+	0	transcript_id "Ledus.S1G371300.t1"; gene_id "Ledus.S1G371300"
Ledus.S1	AUGUSTUS	CDS	30157379	30158578	0.95	+	0	transcript_id "Ledus.S1G371300.t1"; gene_id "Ledus.S1G371300"
Ledus.S1	AUGUSTUS	exon	30157379	30158578	.	+	.	transcript_id "Ledus.S1G371300.t1"; gene_id "Ledus.S1G371300"
Ledus.S1	AUGUSTUS	stop_codon	30158579	30158581	.	+	0	transcript_id "Ledus.S1G371300.t1"; gene_id "Ledus.S1G371300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5820.t1 is derived from g3262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27089178	27090683	.	-	.	Ledus.S1G324100
Ledus.S1	AUGUSTUS	transcript	27089178	27090683	.	-	.	transcript_id "Ledus.S1G324100.t1"; gene_id "Ledus.S1G324100"
Ledus.S1	AUGUSTUS	stop_codon	27089175	27089177	.	-	0	transcript_id "Ledus.S1G324100.t1"; gene_id "Ledus.S1G324100"
Ledus.S1	AUGUSTUS	CDS	27089178	27090683	1	-	0	transcript_id "Ledus.S1G324100.t1"; gene_id "Ledus.S1G324100"
Ledus.S1	AUGUSTUS	exon	27089178	27090683	.	-	.	transcript_id "Ledus.S1G324100.t1"; gene_id "Ledus.S1G324100"
Ledus.S1	AUGUSTUS	start_codon	27090681	27090683	.	-	0	transcript_id "Ledus.S1G324100.t1"; gene_id "Ledus.S1G324100"
# This transcript jg2617.t2 is derived from g50.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2618.t1 is derived from g51.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	528042	530379	.	+	.	Ledus.S1G003900
Ledus.S1	AUGUSTUS	transcript	528042	530379	.	+	.	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	start_codon	528042	528044	.	+	0	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	CDS	528042	528233	0.9	+	0	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	exon	528042	528233	.	+	.	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	intron	528234	528589	.	+	.	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	CDS	528590	528736	1	+	0	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	exon	528590	528736	.	+	.	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	intron	528737	529343	.	+	.	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	CDS	529344	529412	1	+	0	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	exon	529344	529412	.	+	.	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	intron	529413	529499	.	+	.	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	CDS	529500	529693	1	+	0	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	exon	529500	529693	.	+	.	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	intron	529694	530067	.	+	.	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	CDS	530068	530124	1	+	1	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	exon	530068	530124	.	+	.	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	intron	530125	530237	.	+	.	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	CDS	530238	530379	0.85	+	1	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	exon	530238	530379	.	+	.	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
Ledus.S1	AUGUSTUS	stop_codon	530380	530382	.	+	0	transcript_id "Ledus.S1G003900.t1"; gene_id "Ledus.S1G003900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2753.t1 is derived from g187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3144251	3145323	.	-	.	Ledus.S1G017400
Ledus.S1	AUGUSTUS	transcript	3144251	3145323	.	-	.	transcript_id "Ledus.S1G017400.t1"; gene_id "Ledus.S1G017400"
Ledus.S1	AUGUSTUS	stop_codon	3144248	3144250	.	-	0	transcript_id "Ledus.S1G017400.t1"; gene_id "Ledus.S1G017400"
Ledus.S1	AUGUSTUS	CDS	3144251	3144654	0.77	-	2	transcript_id "Ledus.S1G017400.t1"; gene_id "Ledus.S1G017400"
Ledus.S1	AUGUSTUS	exon	3144251	3144654	.	-	.	transcript_id "Ledus.S1G017400.t1"; gene_id "Ledus.S1G017400"
Ledus.S1	AUGUSTUS	intron	3144655	3144742	.	-	.	transcript_id "Ledus.S1G017400.t1"; gene_id "Ledus.S1G017400"
Ledus.S1	AUGUSTUS	CDS	3144743	3144961	0.95	-	2	transcript_id "Ledus.S1G017400.t1"; gene_id "Ledus.S1G017400"
Ledus.S1	AUGUSTUS	exon	3144743	3144961	.	-	.	transcript_id "Ledus.S1G017400.t1"; gene_id "Ledus.S1G017400"
Ledus.S1	AUGUSTUS	intron	3144962	3145148	.	-	.	transcript_id "Ledus.S1G017400.t1"; gene_id "Ledus.S1G017400"
Ledus.S1	AUGUSTUS	CDS	3145149	3145323	0.35	-	0	transcript_id "Ledus.S1G017400.t1"; gene_id "Ledus.S1G017400"
Ledus.S1	AUGUSTUS	exon	3145149	3145323	.	-	.	transcript_id "Ledus.S1G017400.t1"; gene_id "Ledus.S1G017400"
Ledus.S1	AUGUSTUS	start_codon	3145321	3145323	.	-	0	transcript_id "Ledus.S1G017400.t1"; gene_id "Ledus.S1G017400"
# This transcript jg4453.t2 is derived from g1889.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4454.t1 is derived from g1890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17173892	17174574	.	+	.	Ledus.S1G187500
Ledus.S1	AUGUSTUS	transcript	17173892	17174574	.	+	.	transcript_id "Ledus.S1G187500.t1"; gene_id "Ledus.S1G187500"
Ledus.S1	AUGUSTUS	start_codon	17173892	17173894	.	+	0	transcript_id "Ledus.S1G187500.t1"; gene_id "Ledus.S1G187500"
Ledus.S1	AUGUSTUS	CDS	17173892	17173975	1	+	0	transcript_id "Ledus.S1G187500.t1"; gene_id "Ledus.S1G187500"
Ledus.S1	AUGUSTUS	exon	17173892	17173975	.	+	.	transcript_id "Ledus.S1G187500.t1"; gene_id "Ledus.S1G187500"
Ledus.S1	AUGUSTUS	intron	17173976	17174209	.	+	.	transcript_id "Ledus.S1G187500.t1"; gene_id "Ledus.S1G187500"
Ledus.S1	AUGUSTUS	CDS	17174210	17174353	1	+	0	transcript_id "Ledus.S1G187500.t1"; gene_id "Ledus.S1G187500"
Ledus.S1	AUGUSTUS	exon	17174210	17174353	.	+	.	transcript_id "Ledus.S1G187500.t1"; gene_id "Ledus.S1G187500"
Ledus.S1	AUGUSTUS	intron	17174354	17174496	.	+	.	transcript_id "Ledus.S1G187500.t1"; gene_id "Ledus.S1G187500"
Ledus.S1	AUGUSTUS	CDS	17174497	17174574	0.96	+	0	transcript_id "Ledus.S1G187500.t1"; gene_id "Ledus.S1G187500"
Ledus.S1	AUGUSTUS	exon	17174497	17174574	.	+	.	transcript_id "Ledus.S1G187500.t1"; gene_id "Ledus.S1G187500"
Ledus.S1	AUGUSTUS	stop_codon	17174575	17174577	.	+	0	transcript_id "Ledus.S1G187500.t1"; gene_id "Ledus.S1G187500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg880.t1 is derived from g7741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5944850	5946303	.	-	.	Ledus.S2G076200
Ledus.S2	AUGUSTUS	transcript	5944850	5946303	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	stop_codon	5944847	5944849	.	-	0	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	CDS	5944850	5944978	0.92	-	0	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	exon	5944850	5944978	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	intron	5944979	5945075	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	CDS	5945076	5945168	1	-	0	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	exon	5945076	5945168	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	intron	5945169	5945259	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	CDS	5945260	5945388	1	-	0	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	exon	5945260	5945388	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	intron	5945389	5945466	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	CDS	5945467	5945636	1	-	2	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	exon	5945467	5945636	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	intron	5945637	5945755	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	CDS	5945756	5945963	1	-	0	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	exon	5945756	5945963	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	intron	5945964	5946116	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	CDS	5946117	5946173	1	-	0	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	exon	5946117	5946173	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	intron	5946174	5946300	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	CDS	5946301	5946303	1	-	0	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	exon	5946301	5946303	.	-	.	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
Ledus.S2	AUGUSTUS	start_codon	5946301	5946303	.	-	0	transcript_id "Ledus.S2G076200.t1"; gene_id "Ledus.S2G076200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3689.t1 is derived from g1125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10909299	10911920	.	-	.	Ledus.S1G111000
Ledus.S1	AUGUSTUS	transcript	10909299	10911920	.	-	.	transcript_id "Ledus.S1G111000.t1"; gene_id "Ledus.S1G111000"
Ledus.S1	AUGUSTUS	stop_codon	10909296	10909298	.	-	0	transcript_id "Ledus.S1G111000.t1"; gene_id "Ledus.S1G111000"
Ledus.S1	AUGUSTUS	CDS	10909299	10909735	1	-	2	transcript_id "Ledus.S1G111000.t1"; gene_id "Ledus.S1G111000"
Ledus.S1	AUGUSTUS	exon	10909299	10909735	.	-	.	transcript_id "Ledus.S1G111000.t1"; gene_id "Ledus.S1G111000"
Ledus.S1	AUGUSTUS	intron	10909736	10909817	.	-	.	transcript_id "Ledus.S1G111000.t1"; gene_id "Ledus.S1G111000"
Ledus.S1	AUGUSTUS	CDS	10909818	10911714	1	-	0	transcript_id "Ledus.S1G111000.t1"; gene_id "Ledus.S1G111000"
Ledus.S1	AUGUSTUS	exon	10909818	10911714	.	-	.	transcript_id "Ledus.S1G111000.t1"; gene_id "Ledus.S1G111000"
Ledus.S1	AUGUSTUS	intron	10911715	10911812	.	-	.	transcript_id "Ledus.S1G111000.t1"; gene_id "Ledus.S1G111000"
Ledus.S1	AUGUSTUS	CDS	10911813	10911920	0.99	-	0	transcript_id "Ledus.S1G111000.t1"; gene_id "Ledus.S1G111000"
Ledus.S1	AUGUSTUS	exon	10911813	10911920	.	-	.	transcript_id "Ledus.S1G111000.t1"; gene_id "Ledus.S1G111000"
Ledus.S1	AUGUSTUS	start_codon	10911918	10911920	.	-	0	transcript_id "Ledus.S1G111000.t1"; gene_id "Ledus.S1G111000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5329.t1 is derived from g2768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23393221	23393923	.	+	.	Ledus.S1G275000
Ledus.S1	AUGUSTUS	transcript	23393221	23393923	.	+	.	transcript_id "Ledus.S1G275000.t1"; gene_id "Ledus.S1G275000"
Ledus.S1	AUGUSTUS	start_codon	23393221	23393223	.	+	0	transcript_id "Ledus.S1G275000.t1"; gene_id "Ledus.S1G275000"
Ledus.S1	AUGUSTUS	CDS	23393221	23393571	0.53	+	0	transcript_id "Ledus.S1G275000.t1"; gene_id "Ledus.S1G275000"
Ledus.S1	AUGUSTUS	exon	23393221	23393571	.	+	.	transcript_id "Ledus.S1G275000.t1"; gene_id "Ledus.S1G275000"
Ledus.S1	AUGUSTUS	intron	23393572	23393743	.	+	.	transcript_id "Ledus.S1G275000.t1"; gene_id "Ledus.S1G275000"
Ledus.S1	AUGUSTUS	CDS	23393744	23393923	0.61	+	0	transcript_id "Ledus.S1G275000.t1"; gene_id "Ledus.S1G275000"
Ledus.S1	AUGUSTUS	exon	23393744	23393923	.	+	.	transcript_id "Ledus.S1G275000.t1"; gene_id "Ledus.S1G275000"
Ledus.S1	AUGUSTUS	stop_codon	23393924	23393926	.	+	0	transcript_id "Ledus.S1G275000.t1"; gene_id "Ledus.S1G275000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4189.t1 is derived from g1625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15256746	15257214	.	-	.	Ledus.S1G161000
Ledus.S1	AUGUSTUS	transcript	15256746	15257214	.	-	.	transcript_id "Ledus.S1G161000.t1"; gene_id "Ledus.S1G161000"
Ledus.S1	AUGUSTUS	stop_codon	15256743	15256745	.	-	0	transcript_id "Ledus.S1G161000.t1"; gene_id "Ledus.S1G161000"
Ledus.S1	AUGUSTUS	CDS	15256746	15256817	0.74	-	0	transcript_id "Ledus.S1G161000.t1"; gene_id "Ledus.S1G161000"
Ledus.S1	AUGUSTUS	exon	15256746	15256817	.	-	.	transcript_id "Ledus.S1G161000.t1"; gene_id "Ledus.S1G161000"
Ledus.S1	AUGUSTUS	intron	15256818	15256904	.	-	.	transcript_id "Ledus.S1G161000.t1"; gene_id "Ledus.S1G161000"
Ledus.S1	AUGUSTUS	CDS	15256905	15256988	1	-	0	transcript_id "Ledus.S1G161000.t1"; gene_id "Ledus.S1G161000"
Ledus.S1	AUGUSTUS	exon	15256905	15256988	.	-	.	transcript_id "Ledus.S1G161000.t1"; gene_id "Ledus.S1G161000"
Ledus.S1	AUGUSTUS	intron	15256989	15257172	.	-	.	transcript_id "Ledus.S1G161000.t1"; gene_id "Ledus.S1G161000"
Ledus.S1	AUGUSTUS	CDS	15257173	15257214	0.98	-	0	transcript_id "Ledus.S1G161000.t1"; gene_id "Ledus.S1G161000"
Ledus.S1	AUGUSTUS	exon	15257173	15257214	.	-	.	transcript_id "Ledus.S1G161000.t1"; gene_id "Ledus.S1G161000"
Ledus.S1	AUGUSTUS	start_codon	15257212	15257214	.	-	0	transcript_id "Ledus.S1G161000.t1"; gene_id "Ledus.S1G161000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1912.t1 is derived from g8775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13369689	13371992	.	-	.	Ledus.S2G179400
Ledus.S2	AUGUSTUS	transcript	13369689	13371992	.	-	.	transcript_id "Ledus.S2G179400.t1"; gene_id "Ledus.S2G179400"
Ledus.S2	AUGUSTUS	stop_codon	13369686	13369688	.	-	0	transcript_id "Ledus.S2G179400.t1"; gene_id "Ledus.S2G179400"
Ledus.S2	AUGUSTUS	CDS	13369689	13369760	0.88	-	0	transcript_id "Ledus.S2G179400.t1"; gene_id "Ledus.S2G179400"
Ledus.S2	AUGUSTUS	exon	13369689	13369760	.	-	.	transcript_id "Ledus.S2G179400.t1"; gene_id "Ledus.S2G179400"
Ledus.S2	AUGUSTUS	intron	13369761	13369838	.	-	.	transcript_id "Ledus.S2G179400.t1"; gene_id "Ledus.S2G179400"
Ledus.S2	AUGUSTUS	CDS	13369839	13369964	1	-	0	transcript_id "Ledus.S2G179400.t1"; gene_id "Ledus.S2G179400"
Ledus.S2	AUGUSTUS	exon	13369839	13369964	.	-	.	transcript_id "Ledus.S2G179400.t1"; gene_id "Ledus.S2G179400"
Ledus.S2	AUGUSTUS	intron	13369965	13371134	.	-	.	transcript_id "Ledus.S2G179400.t1"; gene_id "Ledus.S2G179400"
Ledus.S2	AUGUSTUS	CDS	13371135	13371992	1	-	0	transcript_id "Ledus.S2G179400.t1"; gene_id "Ledus.S2G179400"
Ledus.S2	AUGUSTUS	exon	13371135	13371992	.	-	.	transcript_id "Ledus.S2G179400.t1"; gene_id "Ledus.S2G179400"
Ledus.S2	AUGUSTUS	start_codon	13371990	13371992	.	-	0	transcript_id "Ledus.S2G179400.t1"; gene_id "Ledus.S2G179400"
# This transcript jg10970.t2 is derived from g4588.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10971.t1 is derived from g4589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	951166	953028	.	+	.	Ledus.S4G012700
Ledus.S4	AUGUSTUS	transcript	951166	953028	.	+	.	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	start_codon	951166	951168	.	+	0	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	CDS	951166	951567	0.99	+	0	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	exon	951166	951567	.	+	.	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	intron	951568	951648	.	+	.	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	CDS	951649	951809	0.57	+	0	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	exon	951649	951809	.	+	.	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	intron	951810	952434	.	+	.	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	CDS	952435	952508	0.74	+	1	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	exon	952435	952508	.	+	.	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	intron	952509	952633	.	+	.	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	CDS	952634	953028	0.95	+	2	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	exon	952634	953028	.	+	.	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
Ledus.S4	AUGUSTUS	stop_codon	953029	953031	.	+	0	transcript_id "Ledus.S4G012700.t1"; gene_id "Ledus.S4G012700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5249.t1 is derived from g2688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22685864	22686274	.	+	.	Ledus.S1G267000
Ledus.S1	AUGUSTUS	transcript	22685864	22686274	.	+	.	transcript_id "Ledus.S1G267000.t1"; gene_id "Ledus.S1G267000"
Ledus.S1	AUGUSTUS	start_codon	22685864	22685866	.	+	0	transcript_id "Ledus.S1G267000.t1"; gene_id "Ledus.S1G267000"
Ledus.S1	AUGUSTUS	CDS	22685864	22686274	0.91	+	0	transcript_id "Ledus.S1G267000.t1"; gene_id "Ledus.S1G267000"
Ledus.S1	AUGUSTUS	exon	22685864	22686274	.	+	.	transcript_id "Ledus.S1G267000.t1"; gene_id "Ledus.S1G267000"
Ledus.S1	AUGUSTUS	stop_codon	22686275	22686277	.	+	0	transcript_id "Ledus.S1G267000.t1"; gene_id "Ledus.S1G267000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10073.t1 is derived from g11103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12524091	12525739	.	+	.	Ledus.S3G155000
Ledus.S3	AUGUSTUS	transcript	12524091	12525739	.	+	.	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	start_codon	12524091	12524093	.	+	0	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	CDS	12524091	12524253	0.45	+	0	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	exon	12524091	12524253	.	+	.	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	intron	12524254	12524343	.	+	.	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	CDS	12524344	12524446	0.96	+	2	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	exon	12524344	12524446	.	+	.	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	intron	12524447	12524559	.	+	.	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	CDS	12524560	12524868	1	+	1	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	exon	12524560	12524868	.	+	.	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	intron	12524869	12524954	.	+	.	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	CDS	12524955	12525427	1	+	1	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	exon	12524955	12525427	.	+	.	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	intron	12525428	12525524	.	+	.	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	CDS	12525525	12525739	1	+	2	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	exon	12525525	12525739	.	+	.	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
Ledus.S3	AUGUSTUS	stop_codon	12525740	12525742	.	+	0	transcript_id "Ledus.S3G155000.t1"; gene_id "Ledus.S3G155000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10951.t1 is derived from g4569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	846310	851821	.	+	.	Ledus.S4G010700
Ledus.S4	AUGUSTUS	transcript	846310	851821	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	start_codon	846310	846312	.	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	846310	846541	0.53	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	846310	846541	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	846542	846690	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	846691	846791	1	+	2	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	846691	846791	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	846792	846916	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	846917	847039	1	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	846917	847039	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	847040	847244	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	847245	847430	1	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	847245	847430	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	847431	847576	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	847577	847708	0.7	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	847577	847708	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	847709	847782	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	847783	847798	0.73	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	847783	847798	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	847799	847920	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	847921	848130	0.73	+	2	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	847921	848130	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	848131	848245	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	848246	848395	1	+	2	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	848246	848395	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	848396	848512	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	848513	848601	1	+	2	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	848513	848601	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	848602	848725	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	848726	848938	1	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	848726	848938	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	848939	849080	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	849081	849227	1	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	849081	849227	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	849228	849330	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	849331	849504	0.96	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	849331	849504	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	849505	849710	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	849711	849860	1	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	849711	849860	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	849861	849989	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	849990	850112	1	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	849990	850112	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	850113	850197	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	850198	850342	1	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	850198	850342	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	850343	850492	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	850493	850585	1	+	2	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	850493	850585	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	850586	850723	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	850724	850849	1	+	2	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	850724	850849	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	850850	850954	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	850955	851080	1	+	2	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	850955	851080	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	851081	851166	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	851167	851310	1	+	2	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	851167	851310	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	851311	851414	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	851415	851543	1	+	2	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	851415	851543	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	intron	851544	851660	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	CDS	851661	851821	0.99	+	2	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	exon	851661	851821	.	+	.	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
Ledus.S4	AUGUSTUS	stop_codon	851822	851824	.	+	0	transcript_id "Ledus.S4G010700.t1"; gene_id "Ledus.S4G010700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4764.t1 is derived from g2202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19649431	19654049	.	-	.	Ledus.S1G218500
Ledus.S1	AUGUSTUS	transcript	19649431	19654049	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	stop_codon	19649428	19649430	.	-	0	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	CDS	19649431	19649829	0.98	-	0	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	exon	19649431	19649829	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	intron	19649830	19649964	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	CDS	19649965	19650575	0.99	-	2	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	exon	19649965	19650575	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	intron	19650576	19650788	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	CDS	19650789	19651102	1	-	1	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	exon	19650789	19651102	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	intron	19651103	19651181	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	CDS	19651182	19651397	0.85	-	1	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	exon	19651182	19651397	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	intron	19651398	19651503	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	CDS	19651504	19651637	0.84	-	0	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	exon	19651504	19651637	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	intron	19651638	19651768	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	CDS	19651769	19652047	0.98	-	0	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	exon	19651769	19652047	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	intron	19652048	19652203	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	CDS	19652204	19652347	1	-	0	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	exon	19652204	19652347	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	intron	19652348	19652496	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	CDS	19652497	19652735	0.9	-	2	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	exon	19652497	19652735	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	intron	19652736	19652925	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	CDS	19652926	19653317	0.75	-	1	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	exon	19652926	19653317	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	intron	19653318	19653430	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	CDS	19653431	19653750	1	-	0	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	exon	19653431	19653750	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	intron	19653751	19653845	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	CDS	19653846	19654049	0.65	-	0	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	exon	19653846	19654049	.	-	.	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
Ledus.S1	AUGUSTUS	start_codon	19654047	19654049	.	-	0	transcript_id "Ledus.S1G218500.t1"; gene_id "Ledus.S1G218500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8227.t1 is derived from g12898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10048154	10051169	.	-	.	Ledus.S5G100500
Ledus.S5	AUGUSTUS	transcript	10048154	10051169	.	-	.	transcript_id "Ledus.S5G100500.t1"; gene_id "Ledus.S5G100500"
Ledus.S5	AUGUSTUS	stop_codon	10048151	10048153	.	-	0	transcript_id "Ledus.S5G100500.t1"; gene_id "Ledus.S5G100500"
Ledus.S5	AUGUSTUS	CDS	10048154	10048378	0.73	-	0	transcript_id "Ledus.S5G100500.t1"; gene_id "Ledus.S5G100500"
Ledus.S5	AUGUSTUS	exon	10048154	10048378	.	-	.	transcript_id "Ledus.S5G100500.t1"; gene_id "Ledus.S5G100500"
Ledus.S5	AUGUSTUS	intron	10048379	10048497	.	-	.	transcript_id "Ledus.S5G100500.t1"; gene_id "Ledus.S5G100500"
Ledus.S5	AUGUSTUS	CDS	10048498	10048690	0.96	-	1	transcript_id "Ledus.S5G100500.t1"; gene_id "Ledus.S5G100500"
Ledus.S5	AUGUSTUS	exon	10048498	10048690	.	-	.	transcript_id "Ledus.S5G100500.t1"; gene_id "Ledus.S5G100500"
Ledus.S5	AUGUSTUS	intron	10048691	10049106	.	-	.	transcript_id "Ledus.S5G100500.t1"; gene_id "Ledus.S5G100500"
Ledus.S5	AUGUSTUS	CDS	10049107	10051169	0.47	-	0	transcript_id "Ledus.S5G100500.t1"; gene_id "Ledus.S5G100500"
Ledus.S5	AUGUSTUS	exon	10049107	10051169	.	-	.	transcript_id "Ledus.S5G100500.t1"; gene_id "Ledus.S5G100500"
Ledus.S5	AUGUSTUS	start_codon	10051167	10051169	.	-	0	transcript_id "Ledus.S5G100500.t1"; gene_id "Ledus.S5G100500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10989.t1 is derived from g4607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1022393	1023445	.	-	.	Ledus.S4G014500
Ledus.S4	AUGUSTUS	transcript	1022393	1023445	.	-	.	transcript_id "Ledus.S4G014500.t1"; gene_id "Ledus.S4G014500"
Ledus.S4	AUGUSTUS	stop_codon	1022390	1022392	.	-	0	transcript_id "Ledus.S4G014500.t1"; gene_id "Ledus.S4G014500"
Ledus.S4	AUGUSTUS	CDS	1022393	1023445	0.53	-	0	transcript_id "Ledus.S4G014500.t1"; gene_id "Ledus.S4G014500"
Ledus.S4	AUGUSTUS	exon	1022393	1023445	.	-	.	transcript_id "Ledus.S4G014500.t1"; gene_id "Ledus.S4G014500"
Ledus.S4	AUGUSTUS	start_codon	1023443	1023445	.	-	0	transcript_id "Ledus.S4G014500.t1"; gene_id "Ledus.S4G014500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9657.t1 is derived from g10687.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8848793	8849503	.	-	.	Ledus.S3G113400
Ledus.S3	AUGUSTUS	transcript	8848793	8849503	.	-	.	transcript_id "Ledus.S3G113400.t1"; gene_id "Ledus.S3G113400"
Ledus.S3	AUGUSTUS	stop_codon	8848790	8848792	.	-	0	transcript_id "Ledus.S3G113400.t1"; gene_id "Ledus.S3G113400"
Ledus.S3	AUGUSTUS	CDS	8848793	8848893	0.66	-	2	transcript_id "Ledus.S3G113400.t1"; gene_id "Ledus.S3G113400"
Ledus.S3	AUGUSTUS	exon	8848793	8848893	.	-	.	transcript_id "Ledus.S3G113400.t1"; gene_id "Ledus.S3G113400"
Ledus.S3	AUGUSTUS	intron	8848894	8849229	.	-	.	transcript_id "Ledus.S3G113400.t1"; gene_id "Ledus.S3G113400"
Ledus.S3	AUGUSTUS	CDS	8849230	8849503	0.7	-	0	transcript_id "Ledus.S3G113400.t1"; gene_id "Ledus.S3G113400"
Ledus.S3	AUGUSTUS	exon	8849230	8849503	.	-	.	transcript_id "Ledus.S3G113400.t1"; gene_id "Ledus.S3G113400"
Ledus.S3	AUGUSTUS	start_codon	8849501	8849503	.	-	0	transcript_id "Ledus.S3G113400.t1"; gene_id "Ledus.S3G113400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg153.t1 is derived from g7014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	332854	339678	.	+	.	Ledus.S2G003500
Ledus.S2	AUGUSTUS	transcript	332854	339678	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	start_codon	332854	332856	.	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	332854	332931	0.86	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	332854	332931	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	332932	333058	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	333059	333493	0.48	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	333059	333493	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	333494	333680	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	333681	333782	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	333681	333782	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	333783	333906	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	333907	333987	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	333907	333987	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	333988	334148	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	334149	334250	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	334149	334250	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	334251	334391	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	334392	334469	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	334392	334469	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	334470	334774	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	334775	334825	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	334775	334825	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	334826	334912	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	334913	335026	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	334913	335026	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	335027	335189	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	335190	335291	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	335190	335291	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	335292	335394	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	335395	335529	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	335395	335529	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	335530	335668	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	335669	335850	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	335669	335850	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	335851	335951	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	335952	336093	1	+	1	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	335952	336093	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	336094	336177	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	336178	336252	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	336178	336252	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	336253	336349	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	336350	336451	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	336350	336451	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	336452	336539	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	336540	336701	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	336540	336701	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	336702	336805	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	336806	336895	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	336806	336895	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	336896	336991	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	336992	337153	1	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	336992	337153	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	337154	337265	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	337266	337523	0.83	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	337266	337523	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	337524	337615	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	337616	337630	0.93	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	337616	337630	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	intron	337631	337908	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	CDS	337909	339678	0.6	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	exon	337909	339678	.	+	.	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
Ledus.S2	AUGUSTUS	stop_codon	339679	339681	.	+	0	transcript_id "Ledus.S2G003500.t1"; gene_id "Ledus.S2G003500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11231.t1 is derived from g4849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2838398	2841724	.	-	.	Ledus.S4G038700
Ledus.S4	AUGUSTUS	transcript	2838398	2841724	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	stop_codon	2838395	2838397	.	-	0	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	CDS	2838398	2838440	0.99	-	1	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	exon	2838398	2838440	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	intron	2838441	2838687	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	CDS	2838688	2838718	1	-	2	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	exon	2838688	2838718	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	intron	2838719	2838784	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	CDS	2838785	2838807	1	-	1	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	exon	2838785	2838807	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	intron	2838808	2839255	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	CDS	2839256	2839306	0.88	-	1	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	exon	2839256	2839306	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	intron	2839307	2839412	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	CDS	2839413	2840582	0.78	-	1	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	exon	2839413	2840582	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	intron	2840583	2840688	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	CDS	2840689	2840696	0.9	-	0	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	exon	2840689	2840696	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	intron	2840697	2840875	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	CDS	2840876	2841117	0.44	-	2	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	exon	2840876	2841117	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	intron	2841118	2841236	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	CDS	2841237	2841276	0.46	-	0	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	exon	2841237	2841276	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	intron	2841277	2841511	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	CDS	2841512	2841724	0.43	-	0	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	exon	2841512	2841724	.	-	.	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
Ledus.S4	AUGUSTUS	start_codon	2841722	2841724	.	-	0	transcript_id "Ledus.S4G038700.t1"; gene_id "Ledus.S4G038700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5218.t1 is derived from g2657.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22520632	22522472	.	-	.	Ledus.S1G263900
Ledus.S1	AUGUSTUS	transcript	22520632	22522472	.	-	.	transcript_id "Ledus.S1G263900.t1"; gene_id "Ledus.S1G263900"
Ledus.S1	AUGUSTUS	stop_codon	22520629	22520631	.	-	0	transcript_id "Ledus.S1G263900.t1"; gene_id "Ledus.S1G263900"
Ledus.S1	AUGUSTUS	CDS	22520632	22521349	0.4	-	1	transcript_id "Ledus.S1G263900.t1"; gene_id "Ledus.S1G263900"
Ledus.S1	AUGUSTUS	exon	22520632	22521349	.	-	.	transcript_id "Ledus.S1G263900.t1"; gene_id "Ledus.S1G263900"
Ledus.S1	AUGUSTUS	intron	22521350	22521602	.	-	.	transcript_id "Ledus.S1G263900.t1"; gene_id "Ledus.S1G263900"
Ledus.S1	AUGUSTUS	CDS	22521603	22521749	0.85	-	1	transcript_id "Ledus.S1G263900.t1"; gene_id "Ledus.S1G263900"
Ledus.S1	AUGUSTUS	exon	22521603	22521749	.	-	.	transcript_id "Ledus.S1G263900.t1"; gene_id "Ledus.S1G263900"
Ledus.S1	AUGUSTUS	intron	22521750	22521933	.	-	.	transcript_id "Ledus.S1G263900.t1"; gene_id "Ledus.S1G263900"
Ledus.S1	AUGUSTUS	CDS	22521934	22522472	0.46	-	0	transcript_id "Ledus.S1G263900.t1"; gene_id "Ledus.S1G263900"
Ledus.S1	AUGUSTUS	exon	22521934	22522472	.	-	.	transcript_id "Ledus.S1G263900.t1"; gene_id "Ledus.S1G263900"
Ledus.S1	AUGUSTUS	start_codon	22522470	22522472	.	-	0	transcript_id "Ledus.S1G263900.t1"; gene_id "Ledus.S1G263900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5171.t1 is derived from g2610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22149583	22151596	.	+	.	Ledus.S1G259200
Ledus.S1	AUGUSTUS	transcript	22149583	22151596	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	start_codon	22149583	22149585	.	+	0	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	CDS	22149583	22149592	0.93	+	0	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	exon	22149583	22149592	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	intron	22149593	22149669	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	CDS	22149670	22149745	1	+	2	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	exon	22149670	22149745	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	intron	22149746	22149827	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	CDS	22149828	22149873	1	+	1	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	exon	22149828	22149873	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	intron	22149874	22149949	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	CDS	22149950	22150064	1	+	0	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	exon	22149950	22150064	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	intron	22150065	22150176	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	CDS	22150177	22150244	0.83	+	2	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	exon	22150177	22150244	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	intron	22150245	22150329	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	CDS	22150330	22150944	1	+	0	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	exon	22150330	22150944	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	intron	22150945	22151055	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	CDS	22151056	22151157	1	+	0	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	exon	22151056	22151157	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	intron	22151158	22151248	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	CDS	22151249	22151596	0.99	+	0	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	exon	22151249	22151596	.	+	.	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
Ledus.S1	AUGUSTUS	stop_codon	22151597	22151599	.	+	0	transcript_id "Ledus.S1G259200.t1"; gene_id "Ledus.S1G259200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5882.t1 is derived from g3324.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27574457	27580605	.	+	.	Ledus.S1G330300
Ledus.S1	AUGUSTUS	transcript	27574457	27580605	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	start_codon	27574457	27574459	.	+	0	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	CDS	27574457	27576394	0.41	+	0	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	exon	27574457	27576394	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	intron	27576395	27576499	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	CDS	27576500	27577297	0.53	+	0	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	exon	27576500	27577297	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	intron	27577298	27577555	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	CDS	27577556	27578050	0.64	+	0	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	exon	27577556	27578050	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	intron	27578051	27578228	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	CDS	27578229	27578320	1	+	0	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	exon	27578229	27578320	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	intron	27578321	27578432	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	CDS	27578433	27578520	0.98	+	1	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	exon	27578433	27578520	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	intron	27578521	27578644	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	CDS	27578645	27578759	0.85	+	0	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	exon	27578645	27578759	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	intron	27578760	27578884	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	CDS	27578885	27579014	1	+	2	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	exon	27578885	27579014	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	intron	27579015	27579136	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	CDS	27579137	27579311	1	+	1	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	exon	27579137	27579311	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	intron	27579312	27579450	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	CDS	27579451	27579644	1	+	0	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	exon	27579451	27579644	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	intron	27579645	27579734	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	CDS	27579735	27580605	0.99	+	1	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	exon	27579735	27580605	.	+	.	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
Ledus.S1	AUGUSTUS	stop_codon	27580606	27580608	.	+	0	transcript_id "Ledus.S1G330300.t1"; gene_id "Ledus.S1G330300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3224.t1 is derived from g659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6985967	6986827	.	-	.	Ledus.S1G064500
Ledus.S1	AUGUSTUS	transcript	6985967	6986827	.	-	.	transcript_id "Ledus.S1G064500.t1"; gene_id "Ledus.S1G064500"
Ledus.S1	AUGUSTUS	stop_codon	6985964	6985966	.	-	0	transcript_id "Ledus.S1G064500.t1"; gene_id "Ledus.S1G064500"
Ledus.S1	AUGUSTUS	CDS	6985967	6986827	1	-	0	transcript_id "Ledus.S1G064500.t1"; gene_id "Ledus.S1G064500"
Ledus.S1	AUGUSTUS	exon	6985967	6986827	.	-	.	transcript_id "Ledus.S1G064500.t1"; gene_id "Ledus.S1G064500"
Ledus.S1	AUGUSTUS	start_codon	6986825	6986827	.	-	0	transcript_id "Ledus.S1G064500.t1"; gene_id "Ledus.S1G064500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5332.t1 is derived from g2771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23406208	23411459	.	+	.	Ledus.S1G275300
Ledus.S1	AUGUSTUS	transcript	23406208	23411459	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	start_codon	23406208	23406210	.	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23406208	23406606	0.8	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23406208	23406606	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23406607	23406708	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23406709	23406790	1	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23406709	23406790	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23406791	23406916	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23406917	23406993	0.98	+	2	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23406917	23406993	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23406994	23407072	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23407073	23407185	0.58	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23407073	23407185	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23407186	23407305	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23407306	23407414	0.69	+	1	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23407306	23407414	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23407415	23407514	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23407515	23407631	0.92	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23407515	23407631	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23407632	23407701	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23407702	23407793	0.97	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23407702	23407793	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23407794	23407917	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23407918	23407984	0.96	+	1	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23407918	23407984	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23407985	23408065	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23408066	23408144	0.97	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23408066	23408144	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23408145	23408241	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23408242	23408333	1	+	2	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23408242	23408333	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23408334	23408455	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23408456	23408599	0.98	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23408456	23408599	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23408600	23408803	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23408804	23408866	0.65	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23408804	23408866	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23408867	23408971	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23408972	23409471	0.4	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23408972	23409471	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23409472	23409602	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23409603	23409708	0.98	+	1	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23409603	23409708	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23409709	23409953	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23409954	23410046	1	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23409954	23410046	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23410047	23410126	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23410127	23410327	1	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23410127	23410327	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23410328	23410420	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23410421	23410545	0.88	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23410421	23410545	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23410546	23410751	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23410752	23410920	0.85	+	1	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23410752	23410920	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	intron	23410921	23411129	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	CDS	23411130	23411459	1	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	exon	23411130	23411459	.	+	.	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
Ledus.S1	AUGUSTUS	stop_codon	23411460	23411462	.	+	0	transcript_id "Ledus.S1G275300.t1"; gene_id "Ledus.S1G275300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12897.t1 is derived from g4389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	143619	144020	.	-	.	Ledus.C9G000500
Ledus.C9	AUGUSTUS	transcript	143619	144020	.	-	.	transcript_id "Ledus.C9G000500.t1"; gene_id "Ledus.C9G000500"
Ledus.C9	AUGUSTUS	stop_codon	143616	143618	.	-	0	transcript_id "Ledus.C9G000500.t1"; gene_id "Ledus.C9G000500"
Ledus.C9	AUGUSTUS	CDS	143619	144020	0.98	-	0	transcript_id "Ledus.C9G000500.t1"; gene_id "Ledus.C9G000500"
Ledus.C9	AUGUSTUS	exon	143619	144020	.	-	.	transcript_id "Ledus.C9G000500.t1"; gene_id "Ledus.C9G000500"
Ledus.C9	AUGUSTUS	start_codon	144018	144020	.	-	0	transcript_id "Ledus.C9G000500.t1"; gene_id "Ledus.C9G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1444.t1 is derived from g8305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10180574	10180924	.	+	.	Ledus.S2G132600
Ledus.S2	AUGUSTUS	transcript	10180574	10180924	.	+	.	transcript_id "Ledus.S2G132600.t1"; gene_id "Ledus.S2G132600"
Ledus.S2	AUGUSTUS	start_codon	10180574	10180576	.	+	0	transcript_id "Ledus.S2G132600.t1"; gene_id "Ledus.S2G132600"
Ledus.S2	AUGUSTUS	CDS	10180574	10180924	0.6	+	0	transcript_id "Ledus.S2G132600.t1"; gene_id "Ledus.S2G132600"
Ledus.S2	AUGUSTUS	exon	10180574	10180924	.	+	.	transcript_id "Ledus.S2G132600.t1"; gene_id "Ledus.S2G132600"
Ledus.S2	AUGUSTUS	stop_codon	10180925	10180927	.	+	0	transcript_id "Ledus.S2G132600.t1"; gene_id "Ledus.S2G132600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12604.t1 is derived from g6226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13181434	13181879	.	+	.	Ledus.S4G176000
Ledus.S4	AUGUSTUS	transcript	13181434	13181879	.	+	.	transcript_id "Ledus.S4G176000.t1"; gene_id "Ledus.S4G176000"
Ledus.S4	AUGUSTUS	start_codon	13181434	13181436	.	+	0	transcript_id "Ledus.S4G176000.t1"; gene_id "Ledus.S4G176000"
Ledus.S4	AUGUSTUS	CDS	13181434	13181649	0.15	+	0	transcript_id "Ledus.S4G176000.t1"; gene_id "Ledus.S4G176000"
Ledus.S4	AUGUSTUS	exon	13181434	13181649	.	+	.	transcript_id "Ledus.S4G176000.t1"; gene_id "Ledus.S4G176000"
Ledus.S4	AUGUSTUS	intron	13181650	13181720	.	+	.	transcript_id "Ledus.S4G176000.t1"; gene_id "Ledus.S4G176000"
Ledus.S4	AUGUSTUS	CDS	13181721	13181879	0.23	+	0	transcript_id "Ledus.S4G176000.t1"; gene_id "Ledus.S4G176000"
Ledus.S4	AUGUSTUS	exon	13181721	13181879	.	+	.	transcript_id "Ledus.S4G176000.t1"; gene_id "Ledus.S4G176000"
Ledus.S4	AUGUSTUS	stop_codon	13181880	13181882	.	+	0	transcript_id "Ledus.S4G176000.t1"; gene_id "Ledus.S4G176000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2055.t1 is derived from g8918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14359759	14360586	.	+	.	Ledus.S2G193700
Ledus.S2	AUGUSTUS	transcript	14359759	14360586	.	+	.	transcript_id "Ledus.S2G193700.t1"; gene_id "Ledus.S2G193700"
Ledus.S2	AUGUSTUS	start_codon	14359759	14359761	.	+	0	transcript_id "Ledus.S2G193700.t1"; gene_id "Ledus.S2G193700"
Ledus.S2	AUGUSTUS	CDS	14359759	14360586	0.86	+	0	transcript_id "Ledus.S2G193700.t1"; gene_id "Ledus.S2G193700"
Ledus.S2	AUGUSTUS	exon	14359759	14360586	.	+	.	transcript_id "Ledus.S2G193700.t1"; gene_id "Ledus.S2G193700"
Ledus.S2	AUGUSTUS	stop_codon	14360587	14360589	.	+	0	transcript_id "Ledus.S2G193700.t1"; gene_id "Ledus.S2G193700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4088.t1 is derived from g1524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14629528	14634976	.	+	.	Ledus.S1G150900
Ledus.S1	AUGUSTUS	transcript	14629528	14634976	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	start_codon	14629528	14629530	.	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14629528	14629638	0.36	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14629528	14629638	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14629639	14629832	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14629833	14629907	1	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14629833	14629907	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14629908	14630334	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14630335	14630388	1	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14630335	14630388	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14630389	14630478	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14630479	14630544	1	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14630479	14630544	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14630545	14630632	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14630633	14630742	1	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14630633	14630742	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14630743	14630852	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14630853	14630920	1	+	1	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14630853	14630920	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14630921	14631065	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14631066	14631179	1	+	2	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14631066	14631179	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14631180	14631278	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14631279	14631319	1	+	2	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14631279	14631319	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14631320	14631411	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14631412	14631512	1	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14631412	14631512	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14631513	14631659	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14631660	14631755	1	+	1	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14631660	14631755	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14631756	14632047	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14632048	14632112	0.75	+	1	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14632048	14632112	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14632113	14632221	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14632222	14632293	0.75	+	2	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14632222	14632293	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14632294	14632446	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14632447	14632608	0.78	+	2	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14632447	14632608	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14632609	14632723	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14632724	14632944	0.78	+	2	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14632724	14632944	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14632945	14633111	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14633112	14633148	1	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14633112	14633148	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14633149	14633360	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14633361	14633527	1	+	2	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14633361	14633527	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14633528	14633676	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14633677	14633778	1	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14633677	14633778	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14633779	14633894	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14633895	14633939	1	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14633895	14633939	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14633940	14634020	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14634021	14634164	0.91	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14634021	14634164	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14634165	14634270	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14634271	14634366	1	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14634271	14634366	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14634367	14634500	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14634501	14634602	1	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14634501	14634602	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	intron	14634603	14634844	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	CDS	14634845	14634976	0.99	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	exon	14634845	14634976	.	+	.	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
Ledus.S1	AUGUSTUS	stop_codon	14634977	14634979	.	+	0	transcript_id "Ledus.S1G150900.t1"; gene_id "Ledus.S1G150900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1075.t1 is derived from g7936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7284957	7286420	.	+	.	Ledus.S2G095700
Ledus.S2	AUGUSTUS	transcript	7284957	7286420	.	+	.	transcript_id "Ledus.S2G095700.t1"; gene_id "Ledus.S2G095700"
Ledus.S2	AUGUSTUS	start_codon	7284957	7284959	.	+	0	transcript_id "Ledus.S2G095700.t1"; gene_id "Ledus.S2G095700"
Ledus.S2	AUGUSTUS	CDS	7284957	7285478	0.9	+	0	transcript_id "Ledus.S2G095700.t1"; gene_id "Ledus.S2G095700"
Ledus.S2	AUGUSTUS	exon	7284957	7285478	.	+	.	transcript_id "Ledus.S2G095700.t1"; gene_id "Ledus.S2G095700"
Ledus.S2	AUGUSTUS	intron	7285479	7285587	.	+	.	transcript_id "Ledus.S2G095700.t1"; gene_id "Ledus.S2G095700"
Ledus.S2	AUGUSTUS	CDS	7285588	7285761	1	+	0	transcript_id "Ledus.S2G095700.t1"; gene_id "Ledus.S2G095700"
Ledus.S2	AUGUSTUS	exon	7285588	7285761	.	+	.	transcript_id "Ledus.S2G095700.t1"; gene_id "Ledus.S2G095700"
Ledus.S2	AUGUSTUS	intron	7285762	7285844	.	+	.	transcript_id "Ledus.S2G095700.t1"; gene_id "Ledus.S2G095700"
Ledus.S2	AUGUSTUS	CDS	7285845	7286420	1	+	0	transcript_id "Ledus.S2G095700.t1"; gene_id "Ledus.S2G095700"
Ledus.S2	AUGUSTUS	exon	7285845	7286420	.	+	.	transcript_id "Ledus.S2G095700.t1"; gene_id "Ledus.S2G095700"
Ledus.S2	AUGUSTUS	stop_codon	7286421	7286423	.	+	0	transcript_id "Ledus.S2G095700.t1"; gene_id "Ledus.S2G095700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2741.t1 is derived from g175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2803313	2803540	.	+	.	Ledus.S1G016200
Ledus.S1	AUGUSTUS	transcript	2803313	2803540	.	+	.	transcript_id "Ledus.S1G016200.t1"; gene_id "Ledus.S1G016200"
Ledus.S1	AUGUSTUS	start_codon	2803313	2803315	.	+	0	transcript_id "Ledus.S1G016200.t1"; gene_id "Ledus.S1G016200"
Ledus.S1	AUGUSTUS	CDS	2803313	2803540	0.96	+	0	transcript_id "Ledus.S1G016200.t1"; gene_id "Ledus.S1G016200"
Ledus.S1	AUGUSTUS	exon	2803313	2803540	.	+	.	transcript_id "Ledus.S1G016200.t1"; gene_id "Ledus.S1G016200"
Ledus.S1	AUGUSTUS	stop_codon	2803541	2803543	.	+	0	transcript_id "Ledus.S1G016200.t1"; gene_id "Ledus.S1G016200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12351.t1 is derived from g5972.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11357618	11360515	.	-	.	Ledus.S4G150700
Ledus.S4	AUGUSTUS	transcript	11357618	11360515	.	-	.	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	stop_codon	11357615	11357617	.	-	0	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	CDS	11357618	11357663	1	-	1	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	exon	11357618	11357663	.	-	.	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	intron	11357664	11357750	.	-	.	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	CDS	11357751	11358108	0.52	-	2	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	exon	11357751	11358108	.	-	.	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	intron	11358109	11358310	.	-	.	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	CDS	11358311	11358392	0.55	-	0	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	exon	11358311	11358392	.	-	.	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	intron	11358393	11358806	.	-	.	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	CDS	11358807	11358895	0.02	-	2	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	exon	11358807	11358895	.	-	.	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	intron	11358896	11360475	.	-	.	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	CDS	11360476	11360515	0.02	-	0	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	exon	11360476	11360515	.	-	.	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
Ledus.S4	AUGUSTUS	start_codon	11360513	11360515	.	-	0	transcript_id "Ledus.S4G150700.t1"; gene_id "Ledus.S4G150700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg281.t1 is derived from g7142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1386653	1388811	.	+	.	Ledus.S2G016300
Ledus.S2	AUGUSTUS	transcript	1386653	1388811	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	start_codon	1386653	1386655	.	+	0	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	CDS	1386653	1386759	1	+	0	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	exon	1386653	1386759	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	intron	1386760	1386836	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	CDS	1386837	1386899	1	+	1	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	exon	1386837	1386899	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	intron	1386900	1386980	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	CDS	1386981	1387049	1	+	1	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	exon	1386981	1387049	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	intron	1387050	1387136	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	CDS	1387137	1387414	0.94	+	1	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	exon	1387137	1387414	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	intron	1387415	1387499	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	CDS	1387500	1387570	1	+	2	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	exon	1387500	1387570	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	intron	1387571	1387656	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	CDS	1387657	1387735	1	+	0	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	exon	1387657	1387735	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	intron	1387736	1387824	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	CDS	1387825	1387897	1	+	2	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	exon	1387825	1387897	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	intron	1387898	1387967	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	CDS	1387968	1388050	1	+	1	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	exon	1387968	1388050	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	intron	1388051	1388128	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	CDS	1388129	1388220	1	+	2	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	exon	1388129	1388220	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	intron	1388221	1388315	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	CDS	1388316	1388422	0.98	+	0	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	exon	1388316	1388422	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	intron	1388423	1388552	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	CDS	1388553	1388616	0.5	+	1	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	exon	1388553	1388616	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	intron	1388617	1388715	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	CDS	1388716	1388811	1	+	0	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	exon	1388716	1388811	.	+	.	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
Ledus.S2	AUGUSTUS	stop_codon	1388812	1388814	.	+	0	transcript_id "Ledus.S2G016300.t1"; gene_id "Ledus.S2G016300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7521.t1 is derived from g12192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3559820	3568413	.	+	.	Ledus.S5G029900
Ledus.S5	AUGUSTUS	transcript	3559820	3568413	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	start_codon	3559820	3559822	.	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3559820	3559912	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3559820	3559912	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3559913	3560036	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3560037	3560124	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3560037	3560124	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3560125	3560221	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3560222	3560330	1	+	2	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3560222	3560330	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3560331	3560416	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3560417	3560515	0.99	+	1	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3560417	3560515	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3560516	3560634	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3560635	3560677	0.99	+	1	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3560635	3560677	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3560678	3560807	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3560808	3560879	0.87	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3560808	3560879	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3560880	3560981	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3560982	3561077	0.85	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3560982	3561077	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3561078	3561178	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3561179	3561442	0.93	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3561179	3561442	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3561443	3561659	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3561660	3561843	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3561660	3561843	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3561844	3561935	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3561936	3562047	1	+	2	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3561936	3562047	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3562048	3562203	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3562204	3562293	1	+	1	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3562204	3562293	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3562294	3562371	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3562372	3562507	1	+	1	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3562372	3562507	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3562508	3562769	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3562770	3562863	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3562770	3562863	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3562864	3562967	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3562968	3563030	0.98	+	2	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3562968	3563030	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3563031	3563238	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3563239	3563348	0.98	+	2	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3563239	3563348	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3563349	3563479	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3563480	3563587	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3563480	3563587	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3563588	3563686	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3563687	3563760	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3563687	3563760	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3563761	3563882	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3563883	3563958	1	+	1	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3563883	3563958	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3563959	3564137	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3564138	3564392	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3564138	3564392	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3564393	3564649	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3564650	3564721	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3564650	3564721	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3564722	3564866	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3564867	3564941	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3564867	3564941	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3564942	3565035	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3565036	3565100	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3565036	3565100	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3565101	3565178	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3565179	3565281	1	+	1	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3565179	3565281	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3565282	3565374	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3565375	3565506	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3565375	3565506	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3565507	3565630	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3565631	3565774	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3565631	3565774	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3565775	3566024	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3566025	3566132	0.98	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3566025	3566132	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3566133	3566242	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3566243	3566293	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3566243	3566293	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3566294	3566389	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3566390	3566467	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3566390	3566467	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3566468	3566547	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3566548	3566661	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3566548	3566661	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3566662	3566774	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3566775	3566971	1	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3566775	3566971	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3566972	3567088	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3567089	3567158	0.92	+	1	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3567089	3567158	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3567159	3567253	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3567254	3567381	0.49	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3567254	3567381	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3567382	3567753	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3567754	3567801	0.66	+	1	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3567754	3567801	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3567802	3567897	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3567898	3567974	0.43	+	1	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3567898	3567974	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	intron	3567975	3568261	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	CDS	3568262	3568413	0.41	+	2	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	exon	3568262	3568413	.	+	.	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
Ledus.S5	AUGUSTUS	stop_codon	3568414	3568416	.	+	0	transcript_id "Ledus.S5G029900.t1"; gene_id "Ledus.S5G029900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4188.t1 is derived from g1624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15251255	15255191	.	+	.	Ledus.S1G160900
Ledus.S1	AUGUSTUS	transcript	15251255	15255191	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	start_codon	15251255	15251257	.	+	0	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	CDS	15251255	15251356	0.29	+	0	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	exon	15251255	15251356	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	intron	15251357	15251558	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	CDS	15251559	15251700	0.83	+	0	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	exon	15251559	15251700	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	intron	15251701	15251813	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	CDS	15251814	15251941	0.95	+	2	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	exon	15251814	15251941	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	intron	15251942	15252066	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	CDS	15252067	15252153	1	+	0	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	exon	15252067	15252153	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	intron	15252154	15252320	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	CDS	15252321	15252464	0.97	+	0	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	exon	15252321	15252464	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	intron	15252465	15252593	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	CDS	15252594	15254091	0.58	+	0	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	exon	15252594	15254091	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	intron	15254092	15254232	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	CDS	15254233	15254345	0.6	+	2	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	exon	15254233	15254345	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	intron	15254346	15254426	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	CDS	15254427	15255191	0.97	+	0	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	exon	15254427	15255191	.	+	.	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
Ledus.S1	AUGUSTUS	stop_codon	15255192	15255194	.	+	0	transcript_id "Ledus.S1G160900.t1"; gene_id "Ledus.S1G160900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg3368.t1 is derived from g803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7882577	7884301	.	-	.	Ledus.S1G078900
Ledus.S1	AUGUSTUS	transcript	7882577	7884199	.	-	.	transcript_id "Ledus.S1G078900.t1"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	stop_codon	7882574	7882576	.	-	0	transcript_id "Ledus.S1G078900.t1"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	CDS	7882577	7884199	0.96	-	0	transcript_id "Ledus.S1G078900.t1"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	exon	7882577	7884199	.	-	.	transcript_id "Ledus.S1G078900.t1"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	start_codon	7884197	7884199	.	-	0	transcript_id "Ledus.S1G078900.t1"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	transcript	7882577	7884079	.	-	.	transcript_id "Ledus.S1G078900.t2"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	stop_codon	7882574	7882576	.	-	0	transcript_id "Ledus.S1G078900.t2"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	CDS	7882577	7884079	0.74	-	0	transcript_id "Ledus.S1G078900.t2"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	exon	7882577	7884079	.	-	.	transcript_id "Ledus.S1G078900.t2"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	start_codon	7884077	7884079	.	-	0	transcript_id "Ledus.S1G078900.t2"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	transcript	7882577	7884301	.	-	.	transcript_id "Ledus.S1G078900.t3"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	stop_codon	7882574	7882576	.	-	0	transcript_id "Ledus.S1G078900.t3"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	CDS	7882577	7884301	0.55	-	0	transcript_id "Ledus.S1G078900.t3"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	exon	7882577	7884301	.	-	.	transcript_id "Ledus.S1G078900.t3"; gene_id "Ledus.S1G078900"
Ledus.S1	AUGUSTUS	start_codon	7884299	7884301	.	-	0	transcript_id "Ledus.S1G078900.t3"; gene_id "Ledus.S1G078900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9208.t1 is derived from g10238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5385981	5387152	.	-	.	Ledus.S3G068500
Ledus.S3	AUGUSTUS	transcript	5385981	5387152	.	-	.	transcript_id "Ledus.S3G068500.t1"; gene_id "Ledus.S3G068500"
Ledus.S3	AUGUSTUS	stop_codon	5385978	5385980	.	-	0	transcript_id "Ledus.S3G068500.t1"; gene_id "Ledus.S3G068500"
Ledus.S3	AUGUSTUS	CDS	5385981	5386384	0.94	-	2	transcript_id "Ledus.S3G068500.t1"; gene_id "Ledus.S3G068500"
Ledus.S3	AUGUSTUS	exon	5385981	5386384	.	-	.	transcript_id "Ledus.S3G068500.t1"; gene_id "Ledus.S3G068500"
Ledus.S3	AUGUSTUS	intron	5386385	5386468	.	-	.	transcript_id "Ledus.S3G068500.t1"; gene_id "Ledus.S3G068500"
Ledus.S3	AUGUSTUS	CDS	5386469	5386637	1	-	0	transcript_id "Ledus.S3G068500.t1"; gene_id "Ledus.S3G068500"
Ledus.S3	AUGUSTUS	exon	5386469	5386637	.	-	.	transcript_id "Ledus.S3G068500.t1"; gene_id "Ledus.S3G068500"
Ledus.S3	AUGUSTUS	intron	5386638	5386723	.	-	.	transcript_id "Ledus.S3G068500.t1"; gene_id "Ledus.S3G068500"
Ledus.S3	AUGUSTUS	CDS	5386724	5387152	0.99	-	0	transcript_id "Ledus.S3G068500.t1"; gene_id "Ledus.S3G068500"
Ledus.S3	AUGUSTUS	exon	5386724	5387152	.	-	.	transcript_id "Ledus.S3G068500.t1"; gene_id "Ledus.S3G068500"
Ledus.S3	AUGUSTUS	start_codon	5387150	5387152	.	-	0	transcript_id "Ledus.S3G068500.t1"; gene_id "Ledus.S3G068500"
# This transcript jg10735.t1 is derived from g11766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17406753	17407585	.	-	.	Ledus.S3G221200
Ledus.S3	AUGUSTUS	transcript	17406753	17407585	.	-	.	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	stop_codon	17406750	17406752	.	-	0	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	CDS	17406753	17406819	0.74	-	1	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	exon	17406753	17406819	.	-	.	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	intron	17406820	17406909	.	-	.	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	CDS	17406910	17407034	0.72	-	0	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	exon	17406910	17407034	.	-	.	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	intron	17407035	17407113	.	-	.	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	CDS	17407114	17407251	0.79	-	0	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	exon	17407114	17407251	.	-	.	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	intron	17407252	17407360	.	-	.	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	CDS	17407361	17407471	0.83	-	0	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	exon	17407361	17407471	.	-	.	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	intron	17407472	17407546	.	-	.	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	CDS	17407547	17407585	0.55	-	0	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	exon	17407547	17407585	.	-	.	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
Ledus.S3	AUGUSTUS	start_codon	17407583	17407585	.	-	0	transcript_id "Ledus.S3G221200.t1"; gene_id "Ledus.S3G221200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8174.t1 is derived from g12845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9673039	9673704	.	+	.	Ledus.S5G095200
Ledus.S5	AUGUSTUS	transcript	9673039	9673704	.	+	.	transcript_id "Ledus.S5G095200.t1"; gene_id "Ledus.S5G095200"
Ledus.S5	AUGUSTUS	start_codon	9673039	9673041	.	+	0	transcript_id "Ledus.S5G095200.t1"; gene_id "Ledus.S5G095200"
Ledus.S5	AUGUSTUS	CDS	9673039	9673704	0.83	+	0	transcript_id "Ledus.S5G095200.t1"; gene_id "Ledus.S5G095200"
Ledus.S5	AUGUSTUS	exon	9673039	9673704	.	+	.	transcript_id "Ledus.S5G095200.t1"; gene_id "Ledus.S5G095200"
Ledus.S5	AUGUSTUS	stop_codon	9673705	9673707	.	+	0	transcript_id "Ledus.S5G095200.t1"; gene_id "Ledus.S5G095200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3773.t1 is derived from g1209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11924124	11925189	.	-	.	Ledus.S1G119400
Ledus.S1	AUGUSTUS	transcript	11924124	11925189	.	-	.	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	stop_codon	11924121	11924123	.	-	0	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	CDS	11924124	11924174	1	-	0	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	exon	11924124	11924174	.	-	.	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	intron	11924175	11924268	.	-	.	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	CDS	11924269	11924424	1	-	0	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	exon	11924269	11924424	.	-	.	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	intron	11924425	11924515	.	-	.	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	CDS	11924516	11924600	1	-	1	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	exon	11924516	11924600	.	-	.	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	intron	11924601	11924679	.	-	.	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	CDS	11924680	11924741	1	-	0	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	exon	11924680	11924741	.	-	.	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	intron	11924742	11924821	.	-	.	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	CDS	11924822	11925046	1	-	0	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	exon	11924822	11925046	.	-	.	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	intron	11925047	11925129	.	-	.	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	CDS	11925130	11925189	0.44	-	0	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	exon	11925130	11925189	.	-	.	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
Ledus.S1	AUGUSTUS	start_codon	11925187	11925189	.	-	0	transcript_id "Ledus.S1G119400.t1"; gene_id "Ledus.S1G119400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2813.t1 is derived from g247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3904228	3907804	.	+	.	Ledus.S1G023400
Ledus.S1	AUGUSTUS	transcript	3904228	3907804	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	start_codon	3904228	3904230	.	+	0	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	CDS	3904228	3905079	0.99	+	0	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	exon	3904228	3905079	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	intron	3905080	3905171	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	CDS	3905172	3905237	1	+	0	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	exon	3905172	3905237	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	intron	3905238	3905308	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	CDS	3905309	3905554	1	+	0	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	exon	3905309	3905554	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	intron	3905555	3905790	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	CDS	3905791	3905982	0.96	+	0	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	exon	3905791	3905982	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	intron	3905983	3906073	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	CDS	3906074	3906214	0.86	+	0	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	exon	3906074	3906214	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	intron	3906215	3906326	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	CDS	3906327	3906416	1	+	0	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	exon	3906327	3906416	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	intron	3906417	3906509	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	CDS	3906510	3906865	1	+	0	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	exon	3906510	3906865	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	intron	3906866	3906956	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	CDS	3906957	3907622	0.43	+	1	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	exon	3906957	3907622	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	intron	3907623	3907695	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	CDS	3907696	3907804	0.32	+	1	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	exon	3907696	3907804	.	+	.	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
Ledus.S1	AUGUSTUS	stop_codon	3907805	3907807	.	+	0	transcript_id "Ledus.S1G023400.t1"; gene_id "Ledus.S1G023400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4268.t1 is derived from g1704.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15838037	15839212	.	-	.	Ledus.S1G168900
Ledus.S1	AUGUSTUS	transcript	15838037	15839212	.	-	.	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	stop_codon	15838034	15838036	.	-	0	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	CDS	15838037	15838094	1	-	1	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	exon	15838037	15838094	.	-	.	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	intron	15838095	15838184	.	-	.	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	CDS	15838185	15838277	1	-	1	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	exon	15838185	15838277	.	-	.	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	intron	15838278	15838364	.	-	.	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	CDS	15838365	15838438	1	-	0	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	exon	15838365	15838438	.	-	.	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	intron	15838439	15838510	.	-	.	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	CDS	15838511	15838562	1	-	1	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	exon	15838511	15838562	.	-	.	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	intron	15838563	15839084	.	-	.	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	CDS	15839085	15839212	1	-	0	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	exon	15839085	15839212	.	-	.	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	start_codon	15839210	15839212	.	-	0	transcript_id "Ledus.S1G168900.t1"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	transcript	15838090	15839212	.	-	.	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	stop_codon	15838087	15838089	.	-	0	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	CDS	15838090	15838099	1	-	1	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	exon	15838090	15838099	.	-	.	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	intron	15838100	15838184	.	-	.	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	CDS	15838185	15838277	1	-	1	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	exon	15838185	15838277	.	-	.	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	intron	15838278	15838364	.	-	.	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	CDS	15838365	15838438	1	-	0	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	exon	15838365	15838438	.	-	.	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	intron	15838439	15838510	.	-	.	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	CDS	15838511	15838562	1	-	1	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	exon	15838511	15838562	.	-	.	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	intron	15838563	15839084	.	-	.	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	CDS	15839085	15839212	1	-	0	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	exon	15839085	15839212	.	-	.	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
Ledus.S1	AUGUSTUS	start_codon	15839210	15839212	.	-	0	transcript_id "Ledus.S1G168900.t2"; gene_id "Ledus.S1G168900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4914.t1 is derived from g2352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20608703	20609434	.	-	.	Ledus.S1G233500
Ledus.S1	AUGUSTUS	transcript	20608703	20609434	.	-	.	transcript_id "Ledus.S1G233500.t1"; gene_id "Ledus.S1G233500"
Ledus.S1	AUGUSTUS	stop_codon	20608700	20608702	.	-	0	transcript_id "Ledus.S1G233500.t1"; gene_id "Ledus.S1G233500"
Ledus.S1	AUGUSTUS	CDS	20608703	20609434	0.88	-	0	transcript_id "Ledus.S1G233500.t1"; gene_id "Ledus.S1G233500"
Ledus.S1	AUGUSTUS	exon	20608703	20609434	.	-	.	transcript_id "Ledus.S1G233500.t1"; gene_id "Ledus.S1G233500"
Ledus.S1	AUGUSTUS	start_codon	20609432	20609434	.	-	0	transcript_id "Ledus.S1G233500.t1"; gene_id "Ledus.S1G233500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3668.t1 is derived from g1104.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10570231	10577510	.	+	.	Ledus.S1G108900
Ledus.S1	AUGUSTUS	transcript	10570231	10577510	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	start_codon	10570231	10570233	.	+	0	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10570231	10570353	1	+	0	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10570231	10570353	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10570354	10570662	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10570663	10570738	0.72	+	0	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10570663	10570738	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10570739	10570849	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10570850	10570927	0.65	+	2	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10570850	10570927	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10570928	10571183	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10571184	10572377	1	+	2	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10571184	10572377	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10572378	10573280	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10573281	10573495	1	+	2	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10573281	10573495	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10573496	10573622	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10573623	10573893	0.98	+	0	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10573623	10573893	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10573894	10574243	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10574244	10574425	1	+	2	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10574244	10574425	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10574426	10574628	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10574629	10574736	0.93	+	0	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10574629	10574736	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10574737	10574842	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10574843	10574952	1	+	0	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10574843	10574952	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10574953	10575462	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10575463	10575568	1	+	1	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10575463	10575568	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10575569	10575855	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10575856	10576023	1	+	0	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10575856	10576023	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10576024	10576106	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10576107	10576235	1	+	0	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10576107	10576235	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10576236	10576341	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10576342	10576524	1	+	0	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10576342	10576524	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10576525	10576713	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10576714	10576845	0.86	+	0	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10576714	10576845	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10576846	10576948	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10576949	10577060	0.86	+	0	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10576949	10577060	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10577061	10577176	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10577177	10577300	1	+	2	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10577177	10577300	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	intron	10577301	10577383	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	CDS	10577384	10577510	0.99	+	1	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	exon	10577384	10577510	.	+	.	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
Ledus.S1	AUGUSTUS	stop_codon	10577511	10577513	.	+	0	transcript_id "Ledus.S1G108900.t1"; gene_id "Ledus.S1G108900"
# This transcript jg9110.t2 is derived from g10140.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9111.t1 is derived from g10141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4650918	4654847	.	-	.	Ledus.S3G058800
Ledus.S3	AUGUSTUS	transcript	4650918	4654847	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	stop_codon	4650915	4650917	.	-	0	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4650918	4651370	0.74	-	0	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4650918	4651370	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4651371	4651505	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4651506	4651630	1	-	2	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4651506	4651630	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4651631	4651781	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4651782	4652230	0.94	-	1	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4651782	4652230	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4652231	4652368	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4652369	4652520	0.97	-	0	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4652369	4652520	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4652521	4652616	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4652617	4652664	1	-	0	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4652617	4652664	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4652665	4652834	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4652835	4652944	1	-	2	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4652835	4652944	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4652945	4653039	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4653040	4653225	0.94	-	2	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4653040	4653225	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4653226	4653326	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4653327	4653433	0.39	-	1	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4653327	4653433	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4653434	4653544	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4653545	4654169	0.35	-	2	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4653545	4654169	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4654170	4654257	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4654258	4654418	1	-	1	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4654258	4654418	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4654419	4654503	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4654504	4654555	1	-	2	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4654504	4654555	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4654556	4654690	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4654691	4654847	0.65	-	0	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4654691	4654847	.	-	.	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	start_codon	4654845	4654847	.	-	0	transcript_id "Ledus.S3G058800.t1"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	transcript	4650918	4654847	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	stop_codon	4650915	4650917	.	-	0	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4650918	4651370	0.75	-	0	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4650918	4651370	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4651371	4651505	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4651506	4651630	1	-	2	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4651506	4651630	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4651631	4651781	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4651782	4652230	0.92	-	1	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4651782	4652230	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4652231	4652368	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4652369	4652520	0.99	-	0	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4652369	4652520	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4652521	4652616	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4652617	4652664	1	-	0	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4652617	4652664	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4652665	4652834	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4652835	4652944	1	-	2	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4652835	4652944	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4652945	4653039	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4653040	4653225	0.92	-	2	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4653040	4653225	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4653226	4653326	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4653327	4653433	0.34	-	1	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4653327	4653433	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4653434	4653544	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4653545	4653856	0.35	-	1	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4653545	4653856	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4653857	4654008	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4654009	4654057	0.65	-	2	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4654009	4654057	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4654058	4654257	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4654258	4654418	1	-	1	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4654258	4654418	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4654419	4654503	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4654504	4654555	1	-	2	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4654504	4654555	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	intron	4654556	4654690	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	CDS	4654691	4654847	0.68	-	0	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	exon	4654691	4654847	.	-	.	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
Ledus.S3	AUGUSTUS	start_codon	4654845	4654847	.	-	0	transcript_id "Ledus.S3G058800.t2"; gene_id "Ledus.S3G058800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8175.t1 is derived from g12846.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9681134	9682651	.	+	.	Ledus.S5G095300
Ledus.S5	AUGUSTUS	transcript	9681134	9682651	.	+	.	transcript_id "Ledus.S5G095300.t1"; gene_id "Ledus.S5G095300"
Ledus.S5	AUGUSTUS	start_codon	9681134	9681136	.	+	0	transcript_id "Ledus.S5G095300.t1"; gene_id "Ledus.S5G095300"
Ledus.S5	AUGUSTUS	CDS	9681134	9682651	1	+	0	transcript_id "Ledus.S5G095300.t1"; gene_id "Ledus.S5G095300"
Ledus.S5	AUGUSTUS	exon	9681134	9682651	.	+	.	transcript_id "Ledus.S5G095300.t1"; gene_id "Ledus.S5G095300"
Ledus.S5	AUGUSTUS	stop_codon	9682652	9682654	.	+	0	transcript_id "Ledus.S5G095300.t1"; gene_id "Ledus.S5G095300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8825.t1 is derived from g9855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2173699	2177291	.	-	.	Ledus.S3G030200
Ledus.S3	AUGUSTUS	transcript	2173699	2177291	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	stop_codon	2173696	2173698	.	-	0	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2173699	2173914	0.79	-	0	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2173699	2173914	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	intron	2173915	2174020	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2174021	2174315	0.79	-	1	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2174021	2174315	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	intron	2174316	2174408	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2174409	2174700	1	-	2	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2174409	2174700	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	intron	2174701	2174786	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2174787	2175218	0.81	-	2	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2174787	2175218	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	intron	2175219	2175479	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2175480	2175547	0.44	-	1	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2175480	2175547	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	intron	2175548	2175659	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2175660	2175783	1	-	2	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2175660	2175783	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	intron	2175784	2175951	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2175952	2176134	0.98	-	2	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2175952	2176134	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	intron	2176135	2176332	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2176333	2176344	0.98	-	2	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2176333	2176344	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	intron	2176345	2176514	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2176515	2176624	1	-	1	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2176515	2176624	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	intron	2176625	2176711	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2176712	2176816	1	-	1	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2176712	2176816	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	intron	2176817	2176908	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2176909	2176961	1	-	0	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2176909	2176961	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	intron	2176962	2177047	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2177048	2177113	0.97	-	0	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2177048	2177113	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	intron	2177114	2177225	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	CDS	2177226	2177291	0.96	-	0	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	exon	2177226	2177291	.	-	.	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
Ledus.S3	AUGUSTUS	start_codon	2177289	2177291	.	-	0	transcript_id "Ledus.S3G030200.t1"; gene_id "Ledus.S3G030200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7945.t1 is derived from g12616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8005932	8006261	.	+	.	Ledus.S5G072300
Ledus.S5	AUGUSTUS	transcript	8005932	8006261	.	+	.	transcript_id "Ledus.S5G072300.t1"; gene_id "Ledus.S5G072300"
Ledus.S5	AUGUSTUS	start_codon	8005932	8005934	.	+	0	transcript_id "Ledus.S5G072300.t1"; gene_id "Ledus.S5G072300"
Ledus.S5	AUGUSTUS	CDS	8005932	8006261	0.99	+	0	transcript_id "Ledus.S5G072300.t1"; gene_id "Ledus.S5G072300"
Ledus.S5	AUGUSTUS	exon	8005932	8006261	.	+	.	transcript_id "Ledus.S5G072300.t1"; gene_id "Ledus.S5G072300"
Ledus.S5	AUGUSTUS	stop_codon	8006262	8006264	.	+	0	transcript_id "Ledus.S5G072300.t1"; gene_id "Ledus.S5G072300"
# This transcript jg6862.t2 is derived from g4306.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6863.t1 is derived from g4307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34804296	34805830	.	-	.	Ledus.S1G428400
Ledus.S1	AUGUSTUS	transcript	34804296	34805830	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	stop_codon	34804293	34804295	.	-	0	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	CDS	34804296	34804358	1	-	0	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	exon	34804296	34804358	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	intron	34804359	34804524	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	CDS	34804525	34804625	0.98	-	2	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	exon	34804525	34804625	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	intron	34804626	34804733	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	CDS	34804734	34804891	0.98	-	1	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	exon	34804734	34804891	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	intron	34804892	34804984	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	CDS	34804985	34805059	1	-	1	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	exon	34804985	34805059	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	intron	34805060	34805145	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	CDS	34805146	34805285	1	-	0	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	exon	34805146	34805285	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	intron	34805286	34805414	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	CDS	34805415	34805508	1	-	1	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	exon	34805415	34805508	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	intron	34805509	34805639	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	CDS	34805640	34805830	0.64	-	0	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	exon	34805640	34805830	.	-	.	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
Ledus.S1	AUGUSTUS	start_codon	34805828	34805830	.	-	0	transcript_id "Ledus.S1G428400.t1"; gene_id "Ledus.S1G428400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg939.t1 is derived from g7800.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6240631	6244386	.	-	.	Ledus.S2G082100
Ledus.S2	AUGUSTUS	transcript	6240631	6244386	.	-	.	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	stop_codon	6240628	6240630	.	-	0	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	CDS	6240631	6243628	0.93	-	1	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	exon	6240631	6243628	.	-	.	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	intron	6243629	6243791	.	-	.	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	CDS	6243792	6243843	1	-	2	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	exon	6243792	6243843	.	-	.	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	intron	6243844	6244015	.	-	.	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	CDS	6244016	6244073	1	-	0	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	exon	6244016	6244073	.	-	.	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	intron	6244074	6244161	.	-	.	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	CDS	6244162	6244386	0.95	-	0	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	exon	6244162	6244386	.	-	.	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	start_codon	6244384	6244386	.	-	0	transcript_id "Ledus.S2G082100.t1"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	transcript	6240631	6244386	.	-	.	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	stop_codon	6240628	6240630	.	-	0	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	CDS	6240631	6243628	0.88	-	1	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	exon	6240631	6243628	.	-	.	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	intron	6243629	6243791	.	-	.	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	CDS	6243792	6243843	1	-	2	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	exon	6243792	6243843	.	-	.	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	intron	6243844	6243964	.	-	.	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	CDS	6243965	6244073	0.81	-	0	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	exon	6243965	6244073	.	-	.	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	intron	6244074	6244161	.	-	.	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	CDS	6244162	6244386	0.98	-	0	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	exon	6244162	6244386	.	-	.	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
Ledus.S2	AUGUSTUS	start_codon	6244384	6244386	.	-	0	transcript_id "Ledus.S2G082100.t2"; gene_id "Ledus.S2G082100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg2390.t1 is derived from g9253.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17851865	17854387	.	+	.	Ledus.S2G227200
Ledus.S2	AUGUSTUS	transcript	17851865	17854387	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	start_codon	17851865	17851867	.	+	0	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17851865	17851986	0.84	+	0	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17851865	17851986	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17851987	17852178	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17852179	17852184	0.97	+	1	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17852179	17852184	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17852185	17852367	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17852368	17852605	0.97	+	1	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17852368	17852605	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17852606	17852695	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17852696	17852800	1	+	0	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17852696	17852800	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17852801	17852887	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17852888	17852959	1	+	0	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17852888	17852959	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17852960	17853050	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17853051	17853644	1	+	0	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17853051	17853644	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17853645	17853751	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17853752	17853871	0.99	+	0	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17853752	17853871	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17853872	17853958	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17853959	17854014	0.99	+	0	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17853959	17854014	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17854015	17854119	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17854120	17854156	1	+	1	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17854120	17854156	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17854157	17854252	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17854253	17854387	0.98	+	0	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17854253	17854387	.	+	.	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	stop_codon	17854388	17854390	.	+	0	transcript_id "Ledus.S2G227200.t1"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	transcript	17851865	17854387	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	start_codon	17851865	17851867	.	+	0	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17851865	17851986	0.81	+	0	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17851865	17851986	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17851987	17852128	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17852129	17852184	0.92	+	1	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17852129	17852184	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17852185	17852336	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17852337	17852605	0.98	+	2	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17852337	17852605	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17852606	17852695	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17852696	17852800	1	+	0	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17852696	17852800	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17852801	17852887	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17852888	17852959	1	+	0	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17852888	17852959	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17852960	17853050	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17853051	17853644	1	+	0	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17853051	17853644	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17853645	17853751	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17853752	17853871	1	+	0	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17853752	17853871	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17853872	17853958	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17853959	17854014	1	+	0	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17853959	17854014	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17854015	17854119	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17854120	17854156	0.98	+	1	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17854120	17854156	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17854157	17854252	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17854253	17854387	0.99	+	0	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17854253	17854387	.	+	.	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	stop_codon	17854388	17854390	.	+	0	transcript_id "Ledus.S2G227200.t2"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	transcript	17851865	17854387	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	start_codon	17851865	17851867	.	+	0	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17851865	17851986	0.84	+	0	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17851865	17851986	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17851987	17852128	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17852129	17852184	0.89	+	1	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17852129	17852184	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17852185	17852336	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17852337	17852605	0.96	+	2	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17852337	17852605	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17852606	17852695	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17852696	17852800	1	+	0	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17852696	17852800	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17852801	17852887	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17852888	17852959	1	+	0	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17852888	17852959	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17852960	17853050	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17853051	17853644	1	+	0	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17853051	17853644	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17853645	17853751	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17853752	17853871	1	+	0	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17853752	17853871	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17853872	17853958	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17853959	17854014	1	+	0	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17853959	17854014	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17854015	17854119	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17854120	17854156	0.86	+	1	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17854120	17854156	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	intron	17854157	17854255	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	CDS	17854256	17854387	0.85	+	0	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	exon	17854256	17854387	.	+	.	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
Ledus.S2	AUGUSTUS	stop_codon	17854388	17854390	.	+	0	transcript_id "Ledus.S2G227200.t3"; gene_id "Ledus.S2G227200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3887.t1 is derived from g1323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13405113	13408379	.	+	.	Ledus.S1G130800
Ledus.S1	AUGUSTUS	transcript	13405113	13408379	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	start_codon	13405113	13405115	.	+	0	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	CDS	13405113	13406330	1	+	0	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	exon	13405113	13406330	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	intron	13406331	13406534	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	CDS	13406535	13406590	1	+	0	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	exon	13406535	13406590	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	intron	13406591	13406779	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	CDS	13406780	13407013	1	+	1	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	exon	13406780	13407013	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	intron	13407014	13407128	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	CDS	13407129	13407423	0.99	+	1	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	exon	13407129	13407423	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	intron	13407424	13407544	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	CDS	13407545	13407738	1	+	0	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	exon	13407545	13407738	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	intron	13407739	13407884	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	CDS	13407885	13407973	0.73	+	1	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	exon	13407885	13407973	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	intron	13407974	13408272	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	CDS	13408273	13408379	0.61	+	2	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	exon	13408273	13408379	.	+	.	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
Ledus.S1	AUGUSTUS	stop_codon	13408380	13408382	.	+	0	transcript_id "Ledus.S1G130800.t1"; gene_id "Ledus.S1G130800"
# This transcript jg4460.t2 is derived from g1896.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4460.t3 is derived from g1896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4461.t1 is derived from g1897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17190508	17193147	.	+	.	Ledus.S1G188200
Ledus.S1	AUGUSTUS	transcript	17190508	17193147	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	start_codon	17190508	17190510	.	+	0	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	CDS	17190508	17190558	0.31	+	0	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	exon	17190508	17190558	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	intron	17190559	17190684	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	CDS	17190685	17190771	1	+	0	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	exon	17190685	17190771	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	intron	17190772	17190903	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	CDS	17190904	17190981	1	+	0	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	exon	17190904	17190981	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	intron	17190982	17191083	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	CDS	17191084	17191167	0.99	+	0	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	exon	17191084	17191167	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	intron	17191168	17191289	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	CDS	17191290	17191354	1	+	0	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	exon	17191290	17191354	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	intron	17191355	17191466	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	CDS	17191467	17191722	1	+	1	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	exon	17191467	17191722	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	intron	17191723	17191844	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	CDS	17191845	17191933	1	+	0	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	exon	17191845	17191933	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	intron	17191934	17192886	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	CDS	17192887	17193001	1	+	1	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	exon	17192887	17193001	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	intron	17193002	17193108	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	CDS	17193109	17193147	1	+	0	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	exon	17193109	17193147	.	+	.	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
Ledus.S1	AUGUSTUS	stop_codon	17193148	17193150	.	+	0	transcript_id "Ledus.S1G188200.t1"; gene_id "Ledus.S1G188200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9701.t1 is derived from g10731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9106766	9109178	.	+	.	Ledus.S3G117800
Ledus.S3	AUGUSTUS	transcript	9106766	9109178	.	+	.	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	start_codon	9106766	9106768	.	+	0	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	CDS	9106766	9107019	0.79	+	0	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	exon	9106766	9107019	.	+	.	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	intron	9107020	9107572	.	+	.	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	CDS	9107573	9107651	1	+	1	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	exon	9107573	9107651	.	+	.	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	intron	9107652	9107791	.	+	.	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	CDS	9107792	9107951	1	+	0	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	exon	9107792	9107951	.	+	.	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	intron	9107952	9108043	.	+	.	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	CDS	9108044	9108178	1	+	2	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	exon	9108044	9108178	.	+	.	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	intron	9108179	9108273	.	+	.	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	CDS	9108274	9108683	0.8	+	2	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	exon	9108274	9108683	.	+	.	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	intron	9108684	9108782	.	+	.	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	CDS	9108783	9109178	1	+	0	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	exon	9108783	9109178	.	+	.	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
Ledus.S3	AUGUSTUS	stop_codon	9109179	9109181	.	+	0	transcript_id "Ledus.S3G117800.t1"; gene_id "Ledus.S3G117800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6016.t1 is derived from g3459.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28416831	28417217	.	+	.	Ledus.S1G343700
Ledus.S1	AUGUSTUS	transcript	28416831	28417217	.	+	.	transcript_id "Ledus.S1G343700.t1"; gene_id "Ledus.S1G343700"
Ledus.S1	AUGUSTUS	start_codon	28416831	28416833	.	+	0	transcript_id "Ledus.S1G343700.t1"; gene_id "Ledus.S1G343700"
Ledus.S1	AUGUSTUS	CDS	28416831	28417217	0.53	+	0	transcript_id "Ledus.S1G343700.t1"; gene_id "Ledus.S1G343700"
Ledus.S1	AUGUSTUS	exon	28416831	28417217	.	+	.	transcript_id "Ledus.S1G343700.t1"; gene_id "Ledus.S1G343700"
Ledus.S1	AUGUSTUS	stop_codon	28417218	28417220	.	+	0	transcript_id "Ledus.S1G343700.t1"; gene_id "Ledus.S1G343700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10235.t1 is derived from g11265.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13720957	13721835	.	+	.	Ledus.S3G171200
Ledus.S3	AUGUSTUS	transcript	13720957	13721835	.	+	.	transcript_id "Ledus.S3G171200.t1"; gene_id "Ledus.S3G171200"
Ledus.S3	AUGUSTUS	start_codon	13720957	13720959	.	+	0	transcript_id "Ledus.S3G171200.t1"; gene_id "Ledus.S3G171200"
Ledus.S3	AUGUSTUS	CDS	13720957	13721835	1	+	0	transcript_id "Ledus.S3G171200.t1"; gene_id "Ledus.S3G171200"
Ledus.S3	AUGUSTUS	exon	13720957	13721835	.	+	.	transcript_id "Ledus.S3G171200.t1"; gene_id "Ledus.S3G171200"
Ledus.S3	AUGUSTUS	stop_codon	13721836	13721838	.	+	0	transcript_id "Ledus.S3G171200.t1"; gene_id "Ledus.S3G171200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7792.t1 is derived from g12463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6763413	6763715	.	+	.	Ledus.S5G057000
Ledus.S5	AUGUSTUS	transcript	6763413	6763715	.	+	.	transcript_id "Ledus.S5G057000.t1"; gene_id "Ledus.S5G057000"
Ledus.S5	AUGUSTUS	start_codon	6763413	6763415	.	+	0	transcript_id "Ledus.S5G057000.t1"; gene_id "Ledus.S5G057000"
Ledus.S5	AUGUSTUS	CDS	6763413	6763715	0.61	+	0	transcript_id "Ledus.S5G057000.t1"; gene_id "Ledus.S5G057000"
Ledus.S5	AUGUSTUS	exon	6763413	6763715	.	+	.	transcript_id "Ledus.S5G057000.t1"; gene_id "Ledus.S5G057000"
Ledus.S5	AUGUSTUS	stop_codon	6763716	6763718	.	+	0	transcript_id "Ledus.S5G057000.t1"; gene_id "Ledus.S5G057000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg254.t1 is derived from g7115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1175762	1177415	.	-	.	Ledus.S2G013600
Ledus.S2	AUGUSTUS	transcript	1175762	1177415	.	-	.	transcript_id "Ledus.S2G013600.t1"; gene_id "Ledus.S2G013600"
Ledus.S2	AUGUSTUS	stop_codon	1175759	1175761	.	-	0	transcript_id "Ledus.S2G013600.t1"; gene_id "Ledus.S2G013600"
Ledus.S2	AUGUSTUS	CDS	1175762	1176176	1	-	1	transcript_id "Ledus.S2G013600.t1"; gene_id "Ledus.S2G013600"
Ledus.S2	AUGUSTUS	exon	1175762	1176176	.	-	.	transcript_id "Ledus.S2G013600.t1"; gene_id "Ledus.S2G013600"
Ledus.S2	AUGUSTUS	intron	1176177	1176288	.	-	.	transcript_id "Ledus.S2G013600.t1"; gene_id "Ledus.S2G013600"
Ledus.S2	AUGUSTUS	CDS	1176289	1177415	0.85	-	0	transcript_id "Ledus.S2G013600.t1"; gene_id "Ledus.S2G013600"
Ledus.S2	AUGUSTUS	exon	1176289	1177415	.	-	.	transcript_id "Ledus.S2G013600.t1"; gene_id "Ledus.S2G013600"
Ledus.S2	AUGUSTUS	start_codon	1177413	1177415	.	-	0	transcript_id "Ledus.S2G013600.t1"; gene_id "Ledus.S2G013600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg935.t1 is derived from g7796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6229879	6235644	.	+	.	Ledus.S2G081700
Ledus.S2	AUGUSTUS	transcript	6229879	6235644	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	start_codon	6229879	6229881	.	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6229879	6229909	0.96	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6229879	6229909	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6229910	6230060	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6230061	6230076	0.85	+	2	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6230061	6230076	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6230077	6230181	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6230182	6230242	0.95	+	1	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6230182	6230242	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6230243	6230691	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6230692	6230836	1	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6230692	6230836	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6230837	6230936	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6230937	6231039	1	+	2	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6230937	6231039	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6231040	6231129	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6231130	6231253	1	+	1	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6231130	6231253	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6231254	6231456	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6231457	6231522	1	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6231457	6231522	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6231523	6231660	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6231661	6231699	1	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6231661	6231699	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6231700	6231924	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6231925	6232005	0.99	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6231925	6232005	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6232006	6232106	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6232107	6232154	0.94	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6232107	6232154	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6232155	6232296	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6232297	6232347	1	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6232297	6232347	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6232348	6232503	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6232504	6232572	1	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6232504	6232572	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6232573	6232667	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6232668	6232946	1	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6232668	6232946	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6232947	6233044	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6233045	6233252	0.83	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6233045	6233252	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6233253	6233632	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6233633	6233696	0.74	+	2	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6233633	6233696	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6233697	6234023	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6234024	6234978	0.91	+	1	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6234024	6234978	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6234979	6235159	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6235160	6235279	0.68	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6235160	6235279	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	intron	6235280	6235479	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	CDS	6235480	6235644	0.46	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	exon	6235480	6235644	.	+	.	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
Ledus.S2	AUGUSTUS	stop_codon	6235645	6235647	.	+	0	transcript_id "Ledus.S2G081700.t1"; gene_id "Ledus.S2G081700"
# This transcript jg11386.t2 is derived from g5004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11387.t1 is derived from g5005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3951767	3956370	.	-	.	Ledus.S4G054300
Ledus.S4	AUGUSTUS	transcript	3951767	3956370	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	stop_codon	3951764	3951766	.	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3951767	3951886	1	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3951767	3951886	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3951887	3951968	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3951969	3952037	1	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3951969	3952037	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3952038	3952134	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3952135	3952335	0.99	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3952135	3952335	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3952336	3952425	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3952426	3952507	1	-	1	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3952426	3952507	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3952508	3952613	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3952614	3952702	0.99	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3952614	3952702	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3952703	3952836	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3952837	3952956	1	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3952837	3952956	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3952957	3953085	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3953086	3953183	1	-	2	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3953086	3953183	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3953184	3953267	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3953268	3953454	1	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3953268	3953454	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3953455	3953538	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3953539	3953740	1	-	1	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3953539	3953740	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3953741	3953825	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3953826	3954245	0.93	-	1	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3953826	3954245	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3954246	3954365	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3954366	3954592	0.93	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3954366	3954592	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3954593	3954714	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3954715	3954786	1	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3954715	3954786	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3954787	3954899	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3954900	3955363	1	-	2	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3954900	3955363	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3955364	3955489	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3955490	3955715	1	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3955490	3955715	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3955716	3955946	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3955947	3956048	1	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3955947	3956048	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3956049	3956148	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3956149	3956370	0.78	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3956149	3956370	.	-	.	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	start_codon	3956368	3956370	.	-	0	transcript_id "Ledus.S4G054300.t1"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	transcript	3951767	3956370	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	stop_codon	3951764	3951766	.	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3951767	3951886	1	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3951767	3951886	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3951887	3951968	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3951969	3952037	1	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3951969	3952037	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3952038	3952134	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3952135	3952335	1	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3952135	3952335	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3952336	3952425	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3952426	3952507	1	-	1	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3952426	3952507	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3952508	3952613	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3952614	3952702	1	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3952614	3952702	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3952703	3952836	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3952837	3952956	1	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3952837	3952956	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3952957	3953085	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3953086	3953174	1	-	2	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3953086	3953174	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3953175	3953267	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3953268	3953454	1	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3953268	3953454	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3953455	3953538	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3953539	3953740	1	-	1	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3953539	3953740	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3953741	3953825	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3953826	3954245	0.9	-	1	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3953826	3954245	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3954246	3954365	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3954366	3954592	0.9	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3954366	3954592	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3954593	3954714	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3954715	3954786	1	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3954715	3954786	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3954787	3954899	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3954900	3955363	1	-	2	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3954900	3955363	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3955364	3955489	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3955490	3955715	1	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3955490	3955715	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3955716	3955946	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3955947	3956048	1	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3955947	3956048	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	intron	3956049	3956148	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	CDS	3956149	3956370	0.85	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	exon	3956149	3956370	.	-	.	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
Ledus.S4	AUGUSTUS	start_codon	3956368	3956370	.	-	0	transcript_id "Ledus.S4G054300.t2"; gene_id "Ledus.S4G054300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4036.t1 is derived from g1472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14273468	14277645	.	-	.	Ledus.S1G145700
Ledus.S1	AUGUSTUS	transcript	14273468	14277645	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	stop_codon	14273465	14273467	.	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14273468	14273548	1	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14273468	14273548	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14273549	14273634	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14273635	14273685	1	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14273635	14273685	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14273686	14273787	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14273788	14273871	0.99	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14273788	14273871	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14273872	14273957	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14273958	14274008	1	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14273958	14274008	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14274009	14274110	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14274111	14274197	1	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14274111	14274197	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14274198	14274276	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14274277	14274326	1	-	2	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14274277	14274326	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14274327	14274410	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14274411	14274484	1	-	1	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14274411	14274484	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14274485	14274568	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14274569	14274693	1	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14274569	14274693	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14274694	14274894	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14274895	14274949	1	-	1	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14274895	14274949	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14274950	14275035	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14275036	14275099	1	-	2	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14275036	14275099	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14275100	14275214	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14275215	14275338	1	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14275215	14275338	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14275339	14275426	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14275427	14275525	1	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14275427	14275525	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14275526	14275632	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14275633	14275758	0.98	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14275633	14275758	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14275759	14275893	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14275894	14276031	1	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14275894	14276031	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14276032	14276225	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14276226	14276395	1	-	2	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14276226	14276395	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14276396	14276515	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14276516	14276584	1	-	2	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14276516	14276584	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14276585	14276696	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14276697	14276847	0.98	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14276697	14276847	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14276848	14276953	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14276954	14277028	0.98	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14276954	14277028	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	intron	14277029	14277315	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	CDS	14277316	14277645	0.51	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	exon	14277316	14277645	.	-	.	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
Ledus.S1	AUGUSTUS	start_codon	14277643	14277645	.	-	0	transcript_id "Ledus.S1G145700.t1"; gene_id "Ledus.S1G145700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9199.t1 is derived from g10229.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5322398	5323050	.	+	.	Ledus.S3G067600
Ledus.S3	AUGUSTUS	transcript	5322398	5323050	.	+	.	transcript_id "Ledus.S3G067600.t1"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	start_codon	5322398	5322400	.	+	0	transcript_id "Ledus.S3G067600.t1"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	CDS	5322398	5322537	0.81	+	0	transcript_id "Ledus.S3G067600.t1"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	exon	5322398	5322537	.	+	.	transcript_id "Ledus.S3G067600.t1"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	intron	5322538	5322741	.	+	.	transcript_id "Ledus.S3G067600.t1"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	CDS	5322742	5322784	0.47	+	1	transcript_id "Ledus.S3G067600.t1"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	exon	5322742	5322784	.	+	.	transcript_id "Ledus.S3G067600.t1"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	intron	5322785	5322915	.	+	.	transcript_id "Ledus.S3G067600.t1"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	CDS	5322916	5323050	0.64	+	0	transcript_id "Ledus.S3G067600.t1"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	exon	5322916	5323050	.	+	.	transcript_id "Ledus.S3G067600.t1"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	stop_codon	5323051	5323053	.	+	0	transcript_id "Ledus.S3G067600.t1"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	transcript	5322398	5323050	.	+	.	transcript_id "Ledus.S3G067600.t2"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	start_codon	5322398	5322400	.	+	0	transcript_id "Ledus.S3G067600.t2"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	CDS	5322398	5322530	0.8	+	0	transcript_id "Ledus.S3G067600.t2"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	exon	5322398	5322530	.	+	.	transcript_id "Ledus.S3G067600.t2"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	intron	5322531	5322741	.	+	.	transcript_id "Ledus.S3G067600.t2"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	CDS	5322742	5322755	0.29	+	2	transcript_id "Ledus.S3G067600.t2"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	exon	5322742	5322755	.	+	.	transcript_id "Ledus.S3G067600.t2"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	intron	5322756	5322915	.	+	.	transcript_id "Ledus.S3G067600.t2"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	CDS	5322916	5323050	0.71	+	0	transcript_id "Ledus.S3G067600.t2"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	exon	5322916	5323050	.	+	.	transcript_id "Ledus.S3G067600.t2"; gene_id "Ledus.S3G067600"
Ledus.S3	AUGUSTUS	stop_codon	5323051	5323053	.	+	0	transcript_id "Ledus.S3G067600.t2"; gene_id "Ledus.S3G067600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1040.t1 is derived from g7901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6911906	6913899	.	+	.	Ledus.S2G092200
Ledus.S2	AUGUSTUS	transcript	6911906	6913899	.	+	.	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	start_codon	6911906	6911908	.	+	0	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	CDS	6911906	6912124	0.59	+	0	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	exon	6911906	6912124	.	+	.	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	intron	6912125	6912621	.	+	.	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	CDS	6912622	6912810	1	+	0	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	exon	6912622	6912810	.	+	.	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	intron	6912811	6913026	.	+	.	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	CDS	6913027	6913143	1	+	0	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	exon	6913027	6913143	.	+	.	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	intron	6913144	6913301	.	+	.	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	CDS	6913302	6913451	1	+	0	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	exon	6913302	6913451	.	+	.	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	intron	6913452	6913563	.	+	.	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	CDS	6913564	6913622	1	+	0	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	exon	6913564	6913622	.	+	.	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	intron	6913623	6913766	.	+	.	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	CDS	6913767	6913899	0.99	+	1	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	exon	6913767	6913899	.	+	.	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
Ledus.S2	AUGUSTUS	stop_codon	6913900	6913902	.	+	0	transcript_id "Ledus.S2G092200.t1"; gene_id "Ledus.S2G092200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4414.t1 is derived from g1850.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16954529	16955293	.	-	.	Ledus.S1G183500
Ledus.S1	AUGUSTUS	transcript	16954529	16955293	.	-	.	transcript_id "Ledus.S1G183500.t1"; gene_id "Ledus.S1G183500"
Ledus.S1	AUGUSTUS	stop_codon	16954526	16954528	.	-	0	transcript_id "Ledus.S1G183500.t1"; gene_id "Ledus.S1G183500"
Ledus.S1	AUGUSTUS	CDS	16954529	16955293	1	-	0	transcript_id "Ledus.S1G183500.t1"; gene_id "Ledus.S1G183500"
Ledus.S1	AUGUSTUS	exon	16954529	16955293	.	-	.	transcript_id "Ledus.S1G183500.t1"; gene_id "Ledus.S1G183500"
Ledus.S1	AUGUSTUS	start_codon	16955291	16955293	.	-	0	transcript_id "Ledus.S1G183500.t1"; gene_id "Ledus.S1G183500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8388.t1 is derived from g13060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11443098	11444170	.	-	.	Ledus.S5G116600
Ledus.S5	AUGUSTUS	transcript	11443098	11444170	.	-	.	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	stop_codon	11443095	11443097	.	-	0	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	CDS	11443098	11443180	0.98	-	2	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	exon	11443098	11443180	.	-	.	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	intron	11443181	11443291	.	-	.	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	CDS	11443292	11443521	0.97	-	1	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	exon	11443292	11443521	.	-	.	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	intron	11443522	11443622	.	-	.	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	CDS	11443623	11443686	1	-	2	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	exon	11443623	11443686	.	-	.	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	intron	11443687	11443811	.	-	.	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	CDS	11443812	11443874	1	-	2	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	exon	11443812	11443874	.	-	.	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	intron	11443875	11443984	.	-	.	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	CDS	11443985	11444084	0.94	-	0	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	exon	11443985	11444084	.	-	.	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	intron	11444085	11444152	.	-	.	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	CDS	11444153	11444170	1	-	0	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	exon	11444153	11444170	.	-	.	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
Ledus.S5	AUGUSTUS	start_codon	11444168	11444170	.	-	0	transcript_id "Ledus.S5G116600.t1"; gene_id "Ledus.S5G116600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3877.t1 is derived from g1313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13327341	13328681	.	-	.	Ledus.S1G129800
Ledus.S1	AUGUSTUS	transcript	13327341	13328681	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	stop_codon	13327338	13327340	.	-	0	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	CDS	13327341	13327482	1	-	1	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	exon	13327341	13327482	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	intron	13327483	13327573	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	CDS	13327574	13327608	1	-	0	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	exon	13327574	13327608	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	intron	13327609	13327793	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	CDS	13327794	13327868	1	-	0	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	exon	13327794	13327868	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	intron	13327869	13327975	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	CDS	13327976	13328044	0.93	-	0	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	exon	13327976	13328044	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	intron	13328045	13328145	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	CDS	13328146	13328185	1	-	1	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	exon	13328146	13328185	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	intron	13328186	13328280	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	CDS	13328281	13328364	1	-	1	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	exon	13328281	13328364	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	intron	13328365	13328456	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	CDS	13328457	13328571	1	-	2	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	exon	13328457	13328571	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	intron	13328572	13328653	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	CDS	13328654	13328681	1	-	0	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	exon	13328654	13328681	.	-	.	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
Ledus.S1	AUGUSTUS	start_codon	13328679	13328681	.	-	0	transcript_id "Ledus.S1G129800.t1"; gene_id "Ledus.S1G129800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2248.t1 is derived from g9111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16460815	16462005	.	-	.	Ledus.S2G213000
Ledus.S2	AUGUSTUS	transcript	16460815	16462005	.	-	.	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	stop_codon	16460812	16460814	.	-	0	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	CDS	16460815	16461313	0.96	-	1	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	exon	16460815	16461313	.	-	.	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	intron	16461314	16461399	.	-	.	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	CDS	16461400	16461489	0.98	-	1	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	exon	16461400	16461489	.	-	.	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	intron	16461490	16461604	.	-	.	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	CDS	16461605	16461725	0.54	-	2	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	exon	16461605	16461725	.	-	.	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	intron	16461726	16461887	.	-	.	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	CDS	16461888	16462005	0.61	-	0	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	exon	16461888	16462005	.	-	.	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
Ledus.S2	AUGUSTUS	start_codon	16462003	16462005	.	-	0	transcript_id "Ledus.S2G213000.t1"; gene_id "Ledus.S2G213000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1357.t1 is derived from g8218.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9453557	9453877	.	+	.	Ledus.S2G123900
Ledus.S2	AUGUSTUS	transcript	9453557	9453877	.	+	.	transcript_id "Ledus.S2G123900.t1"; gene_id "Ledus.S2G123900"
Ledus.S2	AUGUSTUS	start_codon	9453557	9453559	.	+	0	transcript_id "Ledus.S2G123900.t1"; gene_id "Ledus.S2G123900"
Ledus.S2	AUGUSTUS	CDS	9453557	9453877	0.8	+	0	transcript_id "Ledus.S2G123900.t1"; gene_id "Ledus.S2G123900"
Ledus.S2	AUGUSTUS	exon	9453557	9453877	.	+	.	transcript_id "Ledus.S2G123900.t1"; gene_id "Ledus.S2G123900"
Ledus.S2	AUGUSTUS	stop_codon	9453878	9453880	.	+	0	transcript_id "Ledus.S2G123900.t1"; gene_id "Ledus.S2G123900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5850.t1 is derived from g3292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27315859	27318332	.	+	.	Ledus.S1G327100
Ledus.S1	AUGUSTUS	transcript	27315859	27318332	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	start_codon	27315859	27315861	.	+	0	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	CDS	27315859	27315937	1	+	0	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	exon	27315859	27315937	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	intron	27315938	27316016	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	CDS	27316017	27316252	1	+	2	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	exon	27316017	27316252	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	intron	27316253	27316339	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	CDS	27316340	27316537	1	+	0	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	exon	27316340	27316537	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	intron	27316538	27316615	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	CDS	27316616	27316729	1	+	0	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	exon	27316616	27316729	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	intron	27316730	27316838	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	CDS	27316839	27316889	0.99	+	0	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	exon	27316839	27316889	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	intron	27316890	27316993	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	CDS	27316994	27317185	1	+	0	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	exon	27316994	27317185	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	intron	27317186	27317261	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	CDS	27317262	27317495	1	+	0	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	exon	27317262	27317495	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	intron	27317496	27317570	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	CDS	27317571	27317627	1	+	0	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	exon	27317571	27317627	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	intron	27317628	27317720	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	CDS	27317721	27318332	1	+	0	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	exon	27317721	27318332	.	+	.	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
Ledus.S1	AUGUSTUS	stop_codon	27318333	27318335	.	+	0	transcript_id "Ledus.S1G327100.t1"; gene_id "Ledus.S1G327100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4218.t1 is derived from g1654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15620877	15622307	.	-	.	Ledus.S1G163900
Ledus.S1	AUGUSTUS	transcript	15620877	15622307	.	-	.	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	stop_codon	15620874	15620876	.	-	0	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	CDS	15620877	15620914	0.99	-	2	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	exon	15620877	15620914	.	-	.	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	intron	15620915	15621914	.	-	.	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	CDS	15621915	15621984	1	-	0	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	exon	15621915	15621984	.	-	.	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	intron	15621985	15622111	.	-	.	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	CDS	15622112	15622165	1	-	0	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	exon	15622112	15622165	.	-	.	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	intron	15622166	15622253	.	-	.	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	CDS	15622254	15622307	0.97	-	0	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	exon	15622254	15622307	.	-	.	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
Ledus.S1	AUGUSTUS	start_codon	15622305	15622307	.	-	0	transcript_id "Ledus.S1G163900.t1"; gene_id "Ledus.S1G163900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13091.t1 is derived from g6901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5421357	5422275	.	-	.	Ledus.S6G015300
Ledus.S6	AUGUSTUS	transcript	5421357	5422275	.	-	.	transcript_id "Ledus.S6G015300.t1"; gene_id "Ledus.S6G015300"
Ledus.S6	AUGUSTUS	stop_codon	5421354	5421356	.	-	0	transcript_id "Ledus.S6G015300.t1"; gene_id "Ledus.S6G015300"
Ledus.S6	AUGUSTUS	CDS	5421357	5421517	0.45	-	2	transcript_id "Ledus.S6G015300.t1"; gene_id "Ledus.S6G015300"
Ledus.S6	AUGUSTUS	exon	5421357	5421517	.	-	.	transcript_id "Ledus.S6G015300.t1"; gene_id "Ledus.S6G015300"
Ledus.S6	AUGUSTUS	intron	5421518	5421599	.	-	.	transcript_id "Ledus.S6G015300.t1"; gene_id "Ledus.S6G015300"
Ledus.S6	AUGUSTUS	CDS	5421600	5422275	0.66	-	0	transcript_id "Ledus.S6G015300.t1"; gene_id "Ledus.S6G015300"
Ledus.S6	AUGUSTUS	exon	5421600	5422275	.	-	.	transcript_id "Ledus.S6G015300.t1"; gene_id "Ledus.S6G015300"
Ledus.S6	AUGUSTUS	start_codon	5422273	5422275	.	-	0	transcript_id "Ledus.S6G015300.t1"; gene_id "Ledus.S6G015300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4729.t1 is derived from g2167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19314680	19318630	.	-	.	Ledus.S1G215000
Ledus.S1	AUGUSTUS	transcript	19314680	19318630	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	stop_codon	19314677	19314679	.	-	0	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19314680	19314799	1	-	0	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19314680	19314799	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19314800	19314890	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19314891	19315018	1	-	2	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19314891	19315018	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19315019	19315126	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19315127	19315199	1	-	0	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19315127	19315199	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19315200	19315375	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19315376	19315532	1	-	1	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19315376	19315532	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19315533	19315621	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19315622	19315742	1	-	2	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19315622	19315742	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19315743	19315841	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19315842	19315961	1	-	2	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19315842	19315961	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19315962	19316132	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19316133	19316598	1	-	0	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19316133	19316598	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19316599	19316980	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19316981	19317042	1	-	2	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19316981	19317042	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19317043	19317153	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19317154	19317338	0.75	-	1	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19317154	19317338	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19317339	19317518	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19317519	19317601	1	-	0	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19317519	19317601	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19317602	19317709	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19317710	19317888	1	-	2	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19317710	19317888	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19317889	19317981	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19317982	19318099	0.86	-	0	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19317982	19318099	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19318100	19318218	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19318219	19318298	0.86	-	2	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19318219	19318298	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	intron	19318299	19318494	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	CDS	19318495	19318630	0.71	-	0	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	exon	19318495	19318630	.	-	.	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
Ledus.S1	AUGUSTUS	start_codon	19318628	19318630	.	-	0	transcript_id "Ledus.S1G215000.t1"; gene_id "Ledus.S1G215000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8533.t1 is derived from g9563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	61129	65056	.	+	.	Ledus.S3G001000
Ledus.S3	AUGUSTUS	transcript	61129	65056	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	start_codon	61129	61131	.	+	0	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	CDS	61129	61437	1	+	0	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	exon	61129	61437	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	intron	61438	61689	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	CDS	61690	62561	0.98	+	0	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	exon	61690	62561	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	intron	62562	62655	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	CDS	62656	62860	1	+	1	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	exon	62656	62860	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	intron	62861	62956	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	CDS	62957	63170	1	+	0	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	exon	62957	63170	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	intron	63171	63405	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	CDS	63406	63833	1	+	2	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	exon	63406	63833	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	intron	63834	63902	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	CDS	63903	64329	1	+	0	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	exon	63903	64329	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	intron	64330	64449	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	CDS	64450	64530	0.86	+	2	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	exon	64450	64530	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	intron	64531	64649	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	CDS	64650	64840	1	+	2	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	exon	64650	64840	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	intron	64841	64918	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	CDS	64919	65056	0.97	+	0	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	exon	64919	65056	.	+	.	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
Ledus.S3	AUGUSTUS	stop_codon	65057	65059	.	+	0	transcript_id "Ledus.S3G001000.t1"; gene_id "Ledus.S3G001000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12901.t1 is derived from g4393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	165266	169317	.	-	.	Ledus.C9G000900
Ledus.C9	AUGUSTUS	transcript	165266	169317	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	stop_codon	165263	165265	.	-	0	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	165266	165323	0.9	-	1	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	165266	165323	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	165324	165412	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	165413	165547	1	-	1	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	165413	165547	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	165548	165684	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	165685	165809	1	-	0	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	165685	165809	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	165810	165899	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	165900	166007	1	-	0	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	165900	166007	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	166008	166158	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	166159	166314	0.88	-	0	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	166159	166314	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	166315	166417	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	166418	166596	0.94	-	2	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	166418	166596	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	166597	166681	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	166682	166823	1	-	0	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	166682	166823	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	166824	166904	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	166905	166985	1	-	0	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	166905	166985	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	166986	167108	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	167109	167234	1	-	0	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	167109	167234	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	167235	167392	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	167393	167620	0.98	-	0	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	167393	167620	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	167621	167950	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	167951	168030	1	-	2	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	167951	168030	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	168031	168198	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	168199	168394	1	-	0	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	168199	168394	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	168395	168505	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	168506	168750	0.79	-	2	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	168506	168750	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	intron	168751	169121	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	CDS	169122	169317	0.56	-	0	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	exon	169122	169317	.	-	.	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
Ledus.C9	AUGUSTUS	start_codon	169315	169317	.	-	0	transcript_id "Ledus.C9G000900.t1"; gene_id "Ledus.C9G000900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7093.t1 is derived from g6624.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1512021	1512578	.	-	.	Ledus.C7G015400
Ledus.C7	AUGUSTUS	transcript	1512021	1512578	.	-	.	transcript_id "Ledus.C7G015400.t1"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	stop_codon	1512018	1512020	.	-	0	transcript_id "Ledus.C7G015400.t1"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	CDS	1512021	1512039	0.86	-	1	transcript_id "Ledus.C7G015400.t1"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	exon	1512021	1512039	.	-	.	transcript_id "Ledus.C7G015400.t1"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	intron	1512040	1512188	.	-	.	transcript_id "Ledus.C7G015400.t1"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	CDS	1512189	1512417	0.68	-	2	transcript_id "Ledus.C7G015400.t1"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	exon	1512189	1512417	.	-	.	transcript_id "Ledus.C7G015400.t1"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	intron	1512418	1512505	.	-	.	transcript_id "Ledus.C7G015400.t1"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	CDS	1512506	1512578	0.75	-	0	transcript_id "Ledus.C7G015400.t1"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	exon	1512506	1512578	.	-	.	transcript_id "Ledus.C7G015400.t1"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	start_codon	1512576	1512578	.	-	0	transcript_id "Ledus.C7G015400.t1"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	transcript	1512021	1512578	.	-	.	transcript_id "Ledus.C7G015400.t2"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	stop_codon	1512018	1512020	.	-	0	transcript_id "Ledus.C7G015400.t2"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	CDS	1512021	1512036	0.81	-	1	transcript_id "Ledus.C7G015400.t2"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	exon	1512021	1512036	.	-	.	transcript_id "Ledus.C7G015400.t2"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	intron	1512037	1512188	.	-	.	transcript_id "Ledus.C7G015400.t2"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	CDS	1512189	1512417	0.66	-	2	transcript_id "Ledus.C7G015400.t2"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	exon	1512189	1512417	.	-	.	transcript_id "Ledus.C7G015400.t2"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	intron	1512418	1512505	.	-	.	transcript_id "Ledus.C7G015400.t2"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	CDS	1512506	1512578	0.7	-	0	transcript_id "Ledus.C7G015400.t2"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	exon	1512506	1512578	.	-	.	transcript_id "Ledus.C7G015400.t2"; gene_id "Ledus.C7G015400"
Ledus.C7	AUGUSTUS	start_codon	1512576	1512578	.	-	0	transcript_id "Ledus.C7G015400.t2"; gene_id "Ledus.C7G015400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg299.t1 is derived from g7160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1479957	1480896	.	-	.	Ledus.S2G018100
Ledus.S2	AUGUSTUS	transcript	1479957	1480896	.	-	.	transcript_id "Ledus.S2G018100.t1"; gene_id "Ledus.S2G018100"
Ledus.S2	AUGUSTUS	stop_codon	1479954	1479956	.	-	0	transcript_id "Ledus.S2G018100.t1"; gene_id "Ledus.S2G018100"
Ledus.S2	AUGUSTUS	CDS	1479957	1480123	0.77	-	2	transcript_id "Ledus.S2G018100.t1"; gene_id "Ledus.S2G018100"
Ledus.S2	AUGUSTUS	exon	1479957	1480123	.	-	.	transcript_id "Ledus.S2G018100.t1"; gene_id "Ledus.S2G018100"
Ledus.S2	AUGUSTUS	intron	1480124	1480493	.	-	.	transcript_id "Ledus.S2G018100.t1"; gene_id "Ledus.S2G018100"
Ledus.S2	AUGUSTUS	CDS	1480494	1480896	0.96	-	0	transcript_id "Ledus.S2G018100.t1"; gene_id "Ledus.S2G018100"
Ledus.S2	AUGUSTUS	exon	1480494	1480896	.	-	.	transcript_id "Ledus.S2G018100.t1"; gene_id "Ledus.S2G018100"
Ledus.S2	AUGUSTUS	start_codon	1480894	1480896	.	-	0	transcript_id "Ledus.S2G018100.t1"; gene_id "Ledus.S2G018100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6366.t1 is derived from g3809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30792367	30794739	.	-	.	Ledus.S1G378700
Ledus.S1	AUGUSTUS	transcript	30792367	30794739	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	stop_codon	30792364	30792366	.	-	0	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	CDS	30792367	30792579	1	-	0	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	exon	30792367	30792579	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	intron	30792580	30792676	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	CDS	30792677	30792763	1	-	0	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	exon	30792677	30792763	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	intron	30792764	30792913	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	CDS	30792914	30793006	1	-	0	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	exon	30792914	30793006	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	intron	30793007	30793139	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	CDS	30793140	30793265	1	-	0	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	exon	30793140	30793265	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	intron	30793266	30793357	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	CDS	30793358	30793516	1	-	0	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	exon	30793358	30793516	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	intron	30793517	30793653	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	CDS	30793654	30793731	1	-	0	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	exon	30793654	30793731	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	intron	30793732	30793875	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	CDS	30793876	30793935	1	-	0	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	exon	30793876	30793935	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	intron	30793936	30794071	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	CDS	30794072	30794145	1	-	2	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	exon	30794072	30794145	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	intron	30794146	30794277	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	CDS	30794278	30794317	1	-	0	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	exon	30794278	30794317	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	intron	30794318	30794426	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	CDS	30794427	30794549	0.9	-	0	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	exon	30794427	30794549	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	intron	30794550	30794658	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	CDS	30794659	30794739	1	-	0	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	exon	30794659	30794739	.	-	.	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
Ledus.S1	AUGUSTUS	start_codon	30794737	30794739	.	-	0	transcript_id "Ledus.S1G378700.t1"; gene_id "Ledus.S1G378700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3790.t1 is derived from g1226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12163778	12164680	.	+	.	Ledus.S1G121100
Ledus.S1	AUGUSTUS	transcript	12163778	12164680	.	+	.	transcript_id "Ledus.S1G121100.t1"; gene_id "Ledus.S1G121100"
Ledus.S1	AUGUSTUS	start_codon	12163778	12163780	.	+	0	transcript_id "Ledus.S1G121100.t1"; gene_id "Ledus.S1G121100"
Ledus.S1	AUGUSTUS	CDS	12163778	12163832	0.61	+	0	transcript_id "Ledus.S1G121100.t1"; gene_id "Ledus.S1G121100"
Ledus.S1	AUGUSTUS	exon	12163778	12163832	.	+	.	transcript_id "Ledus.S1G121100.t1"; gene_id "Ledus.S1G121100"
Ledus.S1	AUGUSTUS	intron	12163833	12163991	.	+	.	transcript_id "Ledus.S1G121100.t1"; gene_id "Ledus.S1G121100"
Ledus.S1	AUGUSTUS	CDS	12163992	12164680	0.89	+	2	transcript_id "Ledus.S1G121100.t1"; gene_id "Ledus.S1G121100"
Ledus.S1	AUGUSTUS	exon	12163992	12164680	.	+	.	transcript_id "Ledus.S1G121100.t1"; gene_id "Ledus.S1G121100"
Ledus.S1	AUGUSTUS	stop_codon	12164681	12164683	.	+	0	transcript_id "Ledus.S1G121100.t1"; gene_id "Ledus.S1G121100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg751.t1 is derived from g7612.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4818113	4820350	.	-	.	Ledus.S2G063300
Ledus.S2	AUGUSTUS	transcript	4818113	4820350	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	stop_codon	4818110	4818112	.	-	0	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	CDS	4818113	4818265	0.73	-	0	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	exon	4818113	4818265	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	intron	4818266	4818361	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	CDS	4818362	4818493	1	-	0	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	exon	4818362	4818493	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	intron	4818494	4818579	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	CDS	4818580	4818717	1	-	0	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	exon	4818580	4818717	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	intron	4818718	4818795	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	CDS	4818796	4818959	1	-	2	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	exon	4818796	4818959	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	intron	4818960	4819124	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	CDS	4819125	4819209	1	-	0	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	exon	4819125	4819209	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	intron	4819210	4819283	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	CDS	4819284	4819359	1	-	1	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	exon	4819284	4819359	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	intron	4819360	4819447	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	CDS	4819448	4819590	1	-	0	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	exon	4819448	4819590	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	intron	4819591	4819685	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	CDS	4819686	4819981	1	-	2	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	exon	4819686	4819981	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	intron	4819982	4820142	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	CDS	4820143	4820350	0.97	-	0	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	exon	4820143	4820350	.	-	.	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
Ledus.S2	AUGUSTUS	start_codon	4820348	4820350	.	-	0	transcript_id "Ledus.S2G063300.t1"; gene_id "Ledus.S2G063300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10465.t1 is derived from g11495.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15436276	15440543	.	+	.	Ledus.S3G194200
Ledus.S3	AUGUSTUS	transcript	15436276	15440543	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	start_codon	15436276	15436278	.	+	0	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15436276	15436829	0.53	+	0	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15436276	15436829	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15436830	15436900	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15436901	15437036	1	+	1	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15436901	15437036	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15437037	15437169	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15437170	15437319	1	+	0	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15437170	15437319	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15437320	15437477	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15437478	15437750	1	+	0	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15437478	15437750	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15437751	15437848	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15437849	15437991	1	+	0	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15437849	15437991	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15437992	15438150	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15438151	15438253	1	+	1	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15438151	15438253	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15438254	15438364	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15438365	15438487	0.98	+	0	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15438365	15438487	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15438488	15438570	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15438571	15438720	1	+	0	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15438571	15438720	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15438721	15438909	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15438910	15438967	1	+	0	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15438910	15438967	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15438968	15439068	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15439069	15439244	1	+	2	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15439069	15439244	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15439245	15439326	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15439327	15439447	1	+	0	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15439327	15439447	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15439448	15439554	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15439555	15439640	1	+	2	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15439555	15439640	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15439641	15439728	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15439729	15439824	1	+	0	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15439729	15439824	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15439825	15439942	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15439943	15440019	0.99	+	0	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15439943	15440019	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15440020	15440084	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15440085	15440156	0.99	+	1	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15440085	15440156	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15440157	15440252	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15440253	15440336	0.99	+	1	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15440253	15440336	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	intron	15440337	15440482	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	CDS	15440483	15440543	0.99	+	1	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	exon	15440483	15440543	.	+	.	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
Ledus.S3	AUGUSTUS	stop_codon	15440544	15440546	.	+	0	transcript_id "Ledus.S3G194200.t1"; gene_id "Ledus.S3G194200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8331.t1 is derived from g13003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10795430	10798383	.	-	.	Ledus.S5G110900
Ledus.S5	AUGUSTUS	transcript	10795430	10798383	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	stop_codon	10795427	10795429	.	-	0	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	CDS	10795430	10796011	1	-	0	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	exon	10795430	10796011	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	intron	10796012	10796102	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	CDS	10796103	10796183	1	-	0	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	exon	10796103	10796183	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	intron	10796184	10796289	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	CDS	10796290	10796356	1	-	1	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	exon	10796290	10796356	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	intron	10796357	10796465	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	CDS	10796466	10796617	1	-	0	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	exon	10796466	10796617	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	intron	10796618	10796737	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	CDS	10796738	10796828	1	-	1	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	exon	10796738	10796828	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	intron	10796829	10796950	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	CDS	10796951	10797093	1	-	0	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	exon	10796951	10797093	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	intron	10797094	10797280	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	CDS	10797281	10797721	1	-	0	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	exon	10797281	10797721	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	intron	10797722	10797852	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	CDS	10797853	10798383	0.81	-	0	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	exon	10797853	10798383	.	-	.	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
Ledus.S5	AUGUSTUS	start_codon	10798381	10798383	.	-	0	transcript_id "Ledus.S5G110900.t1"; gene_id "Ledus.S5G110900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6032.t1 is derived from g3475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28599049	28602309	.	+	.	Ledus.S1G345300
Ledus.S1	AUGUSTUS	transcript	28599049	28602309	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	start_codon	28599049	28599051	.	+	0	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	CDS	28599049	28599286	0.72	+	0	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	exon	28599049	28599286	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	intron	28599287	28599809	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	CDS	28599810	28599928	1	+	2	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	exon	28599810	28599928	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	intron	28599929	28600025	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	CDS	28600026	28600682	1	+	0	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	exon	28600026	28600682	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	intron	28600683	28600766	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	CDS	28600767	28600844	1	+	0	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	exon	28600767	28600844	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	intron	28600845	28600948	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	CDS	28600949	28601038	1	+	0	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	exon	28600949	28601038	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	intron	28601039	28601175	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	CDS	28601176	28601316	0.99	+	0	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	exon	28601176	28601316	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	intron	28601317	28601425	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	CDS	28601426	28601632	0.89	+	0	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	exon	28601426	28601632	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	intron	28601633	28601743	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	CDS	28601744	28601962	0.99	+	0	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	exon	28601744	28601962	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	intron	28601963	28602072	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	CDS	28602073	28602309	0.99	+	0	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	exon	28602073	28602309	.	+	.	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
Ledus.S1	AUGUSTUS	stop_codon	28602310	28602312	.	+	0	transcript_id "Ledus.S1G345300.t1"; gene_id "Ledus.S1G345300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1418.t1 is derived from g8279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9965584	9965826	.	+	.	Ledus.S2G130000
Ledus.S2	AUGUSTUS	transcript	9965584	9965826	.	+	.	transcript_id "Ledus.S2G130000.t1"; gene_id "Ledus.S2G130000"
Ledus.S2	AUGUSTUS	start_codon	9965584	9965586	.	+	0	transcript_id "Ledus.S2G130000.t1"; gene_id "Ledus.S2G130000"
Ledus.S2	AUGUSTUS	CDS	9965584	9965826	0.66	+	0	transcript_id "Ledus.S2G130000.t1"; gene_id "Ledus.S2G130000"
Ledus.S2	AUGUSTUS	exon	9965584	9965826	.	+	.	transcript_id "Ledus.S2G130000.t1"; gene_id "Ledus.S2G130000"
Ledus.S2	AUGUSTUS	stop_codon	9965827	9965829	.	+	0	transcript_id "Ledus.S2G130000.t1"; gene_id "Ledus.S2G130000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2809.t1 is derived from g243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3885905	3887110	.	-	.	Ledus.S1G023000
Ledus.S1	AUGUSTUS	transcript	3885905	3887110	.	-	.	transcript_id "Ledus.S1G023000.t1"; gene_id "Ledus.S1G023000"
Ledus.S1	AUGUSTUS	stop_codon	3885902	3885904	.	-	0	transcript_id "Ledus.S1G023000.t1"; gene_id "Ledus.S1G023000"
Ledus.S1	AUGUSTUS	CDS	3885905	3887110	1	-	0	transcript_id "Ledus.S1G023000.t1"; gene_id "Ledus.S1G023000"
Ledus.S1	AUGUSTUS	exon	3885905	3887110	.	-	.	transcript_id "Ledus.S1G023000.t1"; gene_id "Ledus.S1G023000"
Ledus.S1	AUGUSTUS	start_codon	3887108	3887110	.	-	0	transcript_id "Ledus.S1G023000.t1"; gene_id "Ledus.S1G023000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4051.t1 is derived from g1487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14326437	14326646	.	-	.	Ledus.S1G147200
Ledus.S1	AUGUSTUS	transcript	14326437	14326646	.	-	.	transcript_id "Ledus.S1G147200.t1"; gene_id "Ledus.S1G147200"
Ledus.S1	AUGUSTUS	stop_codon	14326434	14326436	.	-	0	transcript_id "Ledus.S1G147200.t1"; gene_id "Ledus.S1G147200"
Ledus.S1	AUGUSTUS	CDS	14326437	14326646	0.86	-	0	transcript_id "Ledus.S1G147200.t1"; gene_id "Ledus.S1G147200"
Ledus.S1	AUGUSTUS	exon	14326437	14326646	.	-	.	transcript_id "Ledus.S1G147200.t1"; gene_id "Ledus.S1G147200"
Ledus.S1	AUGUSTUS	start_codon	14326644	14326646	.	-	0	transcript_id "Ledus.S1G147200.t1"; gene_id "Ledus.S1G147200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4406.t1 is derived from g1843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16923322	16924068	.	+	.	Ledus.S1G182800
Ledus.S1	AUGUSTUS	transcript	16923322	16924068	.	+	.	transcript_id "Ledus.S1G182800.t1"; gene_id "Ledus.S1G182800"
Ledus.S1	AUGUSTUS	start_codon	16923322	16923324	.	+	0	transcript_id "Ledus.S1G182800.t1"; gene_id "Ledus.S1G182800"
Ledus.S1	AUGUSTUS	CDS	16923322	16924068	1	+	0	transcript_id "Ledus.S1G182800.t1"; gene_id "Ledus.S1G182800"
Ledus.S1	AUGUSTUS	exon	16923322	16924068	.	+	.	transcript_id "Ledus.S1G182800.t1"; gene_id "Ledus.S1G182800"
Ledus.S1	AUGUSTUS	stop_codon	16924069	16924071	.	+	0	transcript_id "Ledus.S1G182800.t1"; gene_id "Ledus.S1G182800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11816.t1 is derived from g5435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6965887	6967056	.	-	.	Ledus.S4G097200
Ledus.S4	AUGUSTUS	transcript	6965887	6967056	.	-	.	transcript_id "Ledus.S4G097200.t1"; gene_id "Ledus.S4G097200"
Ledus.S4	AUGUSTUS	stop_codon	6965884	6965886	.	-	0	transcript_id "Ledus.S4G097200.t1"; gene_id "Ledus.S4G097200"
Ledus.S4	AUGUSTUS	CDS	6965887	6967056	0.9	-	0	transcript_id "Ledus.S4G097200.t1"; gene_id "Ledus.S4G097200"
Ledus.S4	AUGUSTUS	exon	6965887	6967056	.	-	.	transcript_id "Ledus.S4G097200.t1"; gene_id "Ledus.S4G097200"
Ledus.S4	AUGUSTUS	start_codon	6967054	6967056	.	-	0	transcript_id "Ledus.S4G097200.t1"; gene_id "Ledus.S4G097200"
# This transcript jg9063.t2 is derived from g10093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9064.t1 is derived from g10094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4311911	4313480	.	+	.	Ledus.S3G054100
Ledus.S3	AUGUSTUS	transcript	4311911	4313480	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	start_codon	4311911	4311913	.	+	0	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	CDS	4311911	4311952	1	+	0	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	exon	4311911	4311952	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	intron	4311953	4312325	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	CDS	4312326	4312542	1	+	0	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	exon	4312326	4312542	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	intron	4312543	4312639	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	CDS	4312640	4312740	1	+	2	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	exon	4312640	4312740	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	intron	4312741	4312829	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	CDS	4312830	4312958	1	+	0	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	exon	4312830	4312958	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	intron	4312959	4313054	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	CDS	4313055	4313143	1	+	0	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	exon	4313055	4313143	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	intron	4313144	4313228	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	CDS	4313229	4313334	1	+	1	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	exon	4313229	4313334	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	intron	4313335	4313420	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	CDS	4313421	4313480	1	+	0	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	exon	4313421	4313480	.	+	.	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
Ledus.S3	AUGUSTUS	stop_codon	4313481	4313483	.	+	0	transcript_id "Ledus.S3G054100.t1"; gene_id "Ledus.S3G054100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11340.t1 is derived from g4958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3671101	3672076	.	+	.	Ledus.S4G049600
Ledus.S4	AUGUSTUS	transcript	3671101	3672076	.	+	.	transcript_id "Ledus.S4G049600.t1"; gene_id "Ledus.S4G049600"
Ledus.S4	AUGUSTUS	start_codon	3671101	3671103	.	+	0	transcript_id "Ledus.S4G049600.t1"; gene_id "Ledus.S4G049600"
Ledus.S4	AUGUSTUS	CDS	3671101	3671205	0.35	+	0	transcript_id "Ledus.S4G049600.t1"; gene_id "Ledus.S4G049600"
Ledus.S4	AUGUSTUS	exon	3671101	3671205	.	+	.	transcript_id "Ledus.S4G049600.t1"; gene_id "Ledus.S4G049600"
Ledus.S4	AUGUSTUS	intron	3671206	3671281	.	+	.	transcript_id "Ledus.S4G049600.t1"; gene_id "Ledus.S4G049600"
Ledus.S4	AUGUSTUS	CDS	3671282	3672076	0.99	+	0	transcript_id "Ledus.S4G049600.t1"; gene_id "Ledus.S4G049600"
Ledus.S4	AUGUSTUS	exon	3671282	3672076	.	+	.	transcript_id "Ledus.S4G049600.t1"; gene_id "Ledus.S4G049600"
Ledus.S4	AUGUSTUS	stop_codon	3672077	3672079	.	+	0	transcript_id "Ledus.S4G049600.t1"; gene_id "Ledus.S4G049600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg868.t1 is derived from g7729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5865027	5867373	.	-	.	Ledus.S2G075000
Ledus.S2	AUGUSTUS	transcript	5865027	5867373	.	-	.	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	stop_codon	5865024	5865026	.	-	0	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	CDS	5865027	5865125	0.74	-	0	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	exon	5865027	5865125	.	-	.	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	intron	5865126	5865217	.	-	.	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	CDS	5865218	5865294	0.73	-	2	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	exon	5865218	5865294	.	-	.	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	intron	5865295	5865466	.	-	.	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	CDS	5865467	5865753	0.15	-	1	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	exon	5865467	5865753	.	-	.	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	intron	5865754	5866110	.	-	.	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	CDS	5866111	5866965	0.24	-	1	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	exon	5866111	5866965	.	-	.	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	intron	5866966	5867080	.	-	.	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	CDS	5867081	5867373	0.33	-	0	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	exon	5867081	5867373	.	-	.	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
Ledus.S2	AUGUSTUS	start_codon	5867371	5867373	.	-	0	transcript_id "Ledus.S2G075000.t1"; gene_id "Ledus.S2G075000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11857.t1 is derived from g5476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7355058	7355735	.	-	.	Ledus.S4G101300
Ledus.S4	AUGUSTUS	transcript	7355058	7355735	.	-	.	transcript_id "Ledus.S4G101300.t1"; gene_id "Ledus.S4G101300"
Ledus.S4	AUGUSTUS	stop_codon	7355055	7355057	.	-	0	transcript_id "Ledus.S4G101300.t1"; gene_id "Ledus.S4G101300"
Ledus.S4	AUGUSTUS	CDS	7355058	7355735	0.95	-	0	transcript_id "Ledus.S4G101300.t1"; gene_id "Ledus.S4G101300"
Ledus.S4	AUGUSTUS	exon	7355058	7355735	.	-	.	transcript_id "Ledus.S4G101300.t1"; gene_id "Ledus.S4G101300"
Ledus.S4	AUGUSTUS	start_codon	7355733	7355735	.	-	0	transcript_id "Ledus.S4G101300.t1"; gene_id "Ledus.S4G101300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3774.t1 is derived from g1210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11925467	11927078	.	-	.	Ledus.S1G119500
Ledus.S1	AUGUSTUS	transcript	11925467	11927078	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	stop_codon	11925464	11925466	.	-	0	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11925467	11925553	0.54	-	0	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11925467	11925553	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	intron	11925554	11925726	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11925727	11925786	1	-	0	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11925727	11925786	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	intron	11925787	11925897	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11925898	11925945	0.94	-	0	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11925898	11925945	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	intron	11925946	11926067	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11926068	11926156	1	-	2	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11926068	11926156	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	intron	11926157	11926364	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11926365	11926413	0.95	-	0	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11926365	11926413	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	intron	11926414	11926537	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11926538	11926607	1	-	1	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11926538	11926607	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	intron	11926608	11926703	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11926704	11926801	1	-	0	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11926704	11926801	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	intron	11926802	11926883	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11926884	11926940	1	-	0	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11926884	11926940	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	intron	11926941	11927018	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11927019	11927078	0.95	-	0	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11927019	11927078	.	-	.	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	start_codon	11927076	11927078	.	-	0	transcript_id "Ledus.S1G119500.t1"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	transcript	11926581	11927078	.	-	.	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	stop_codon	11926578	11926580	.	-	0	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11926581	11926620	0.82	-	1	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11926581	11926620	.	-	.	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	intron	11926621	11926703	.	-	.	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11926704	11926801	0.96	-	0	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11926704	11926801	.	-	.	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	intron	11926802	11926883	.	-	.	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11926884	11926940	1	-	0	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11926884	11926940	.	-	.	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	intron	11926941	11927018	.	-	.	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	CDS	11927019	11927078	0.95	-	0	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	exon	11927019	11927078	.	-	.	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
Ledus.S1	AUGUSTUS	start_codon	11927076	11927078	.	-	0	transcript_id "Ledus.S1G119500.t2"; gene_id "Ledus.S1G119500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3281.t1 is derived from g716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7233588	7237056	.	-	.	Ledus.S1G070200
Ledus.S1	AUGUSTUS	transcript	7233588	7237056	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	stop_codon	7233585	7233587	.	-	0	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7233588	7233691	0.7	-	2	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7233588	7233691	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7233692	7233799	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7233800	7233866	0.9	-	0	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7233800	7233866	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7233867	7234018	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7234019	7234124	1	-	1	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7234019	7234124	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7234125	7234223	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7234224	7234330	1	-	0	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7234224	7234330	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7234331	7234494	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7234495	7234614	1	-	0	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7234495	7234614	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7234615	7234756	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7234757	7235005	1	-	0	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7234757	7235005	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7235006	7235089	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7235090	7235289	0.96	-	2	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7235090	7235289	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7235290	7235372	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7235373	7235433	1	-	0	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7235373	7235433	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7235434	7235654	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7235655	7235727	1	-	1	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7235655	7235727	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7235728	7235897	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7235898	7235974	1	-	0	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7235898	7235974	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7235975	7236097	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7236098	7236194	1	-	1	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7236098	7236194	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7236195	7236280	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7236281	7236333	1	-	0	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7236281	7236333	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7236334	7236505	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7236506	7236574	1	-	0	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7236506	7236574	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7236575	7236688	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7236689	7236751	1	-	0	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7236689	7236751	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	intron	7236752	7236858	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	CDS	7236859	7237056	1	-	0	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	exon	7236859	7237056	.	-	.	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
Ledus.S1	AUGUSTUS	start_codon	7237054	7237056	.	-	0	transcript_id "Ledus.S1G070200.t1"; gene_id "Ledus.S1G070200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1776.t1 is derived from g8639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12438550	12440749	.	+	.	Ledus.S2G165800
Ledus.S2	AUGUSTUS	transcript	12438550	12440749	.	+	.	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	start_codon	12438550	12438552	.	+	0	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	CDS	12438550	12438757	0.69	+	0	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	exon	12438550	12438757	.	+	.	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	intron	12438758	12438975	.	+	.	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	CDS	12438976	12439059	0.71	+	2	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	exon	12438976	12439059	.	+	.	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	intron	12439060	12439262	.	+	.	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	CDS	12439263	12439281	0.57	+	2	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	exon	12439263	12439281	.	+	.	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	intron	12439282	12439368	.	+	.	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	CDS	12439369	12439442	0.45	+	1	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	exon	12439369	12439442	.	+	.	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	intron	12439443	12439550	.	+	.	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	CDS	12439551	12440749	0.42	+	2	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	exon	12439551	12440749	.	+	.	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
Ledus.S2	AUGUSTUS	stop_codon	12440750	12440752	.	+	0	transcript_id "Ledus.S2G165800.t1"; gene_id "Ledus.S2G165800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11065.t1 is derived from g4683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1548265	1550443	.	-	.	Ledus.S4G022100
Ledus.S4	AUGUSTUS	transcript	1548265	1550443	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	stop_codon	1548262	1548264	.	-	0	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1548265	1548282	0.88	-	0	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1548265	1548282	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1548283	1548542	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1548543	1548578	0.85	-	0	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1548543	1548578	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1548579	1548785	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1548786	1548791	0.85	-	0	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1548786	1548791	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1548792	1548982	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1548983	1549161	1	-	2	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1548983	1549161	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1549162	1549278	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1549279	1549362	1	-	2	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1549279	1549362	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1549363	1549452	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1549453	1549527	1	-	2	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1549453	1549527	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1549528	1549611	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1549612	1549672	1	-	0	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1549612	1549672	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1549673	1550246	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1550247	1550262	1	-	1	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1550247	1550262	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1550263	1550426	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1550427	1550443	0.92	-	0	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1550427	1550443	.	-	.	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	start_codon	1550441	1550443	.	-	0	transcript_id "Ledus.S4G022100.t1"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	transcript	1548265	1550443	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	stop_codon	1548262	1548264	.	-	0	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1548265	1548282	0.81	-	0	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1548265	1548282	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1548283	1548542	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1548543	1548578	0.78	-	0	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1548543	1548578	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1548579	1548785	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1548786	1548791	0.76	-	0	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1548786	1548791	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1548792	1548982	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1548983	1549161	0.97	-	2	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1548983	1549161	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1549162	1549278	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1549279	1549362	1	-	2	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1549279	1549362	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1549363	1549449	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1549450	1549527	1	-	2	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1549450	1549527	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1549528	1549611	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1549612	1549672	1	-	0	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1549612	1549672	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1549673	1550246	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1550247	1550262	1	-	1	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1550247	1550262	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	intron	1550263	1550426	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	CDS	1550427	1550443	0.92	-	0	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	exon	1550427	1550443	.	-	.	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
Ledus.S4	AUGUSTUS	start_codon	1550441	1550443	.	-	0	transcript_id "Ledus.S4G022100.t2"; gene_id "Ledus.S4G022100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6452.t1 is derived from g3895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31298542	31299421	.	+	.	Ledus.S1G387300
Ledus.S1	AUGUSTUS	transcript	31298542	31299421	.	+	.	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	start_codon	31298542	31298544	.	+	0	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	CDS	31298542	31298606	0.99	+	0	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	exon	31298542	31298606	.	+	.	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	intron	31298607	31298701	.	+	.	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	CDS	31298702	31298878	1	+	1	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	exon	31298702	31298878	.	+	.	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	intron	31298879	31298946	.	+	.	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	CDS	31298947	31299160	1	+	1	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	exon	31298947	31299160	.	+	.	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	intron	31299161	31299241	.	+	.	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	CDS	31299242	31299421	1	+	0	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	exon	31299242	31299421	.	+	.	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
Ledus.S1	AUGUSTUS	stop_codon	31299422	31299424	.	+	0	transcript_id "Ledus.S1G387300.t1"; gene_id "Ledus.S1G387300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3196.t1 is derived from g631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6684583	6684897	.	-	.	Ledus.S1G061700
Ledus.S1	AUGUSTUS	transcript	6684583	6684897	.	-	.	transcript_id "Ledus.S1G061700.t1"; gene_id "Ledus.S1G061700"
Ledus.S1	AUGUSTUS	stop_codon	6684580	6684582	.	-	0	transcript_id "Ledus.S1G061700.t1"; gene_id "Ledus.S1G061700"
Ledus.S1	AUGUSTUS	CDS	6684583	6684897	0.87	-	0	transcript_id "Ledus.S1G061700.t1"; gene_id "Ledus.S1G061700"
Ledus.S1	AUGUSTUS	exon	6684583	6684897	.	-	.	transcript_id "Ledus.S1G061700.t1"; gene_id "Ledus.S1G061700"
Ledus.S1	AUGUSTUS	start_codon	6684895	6684897	.	-	0	transcript_id "Ledus.S1G061700.t1"; gene_id "Ledus.S1G061700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3812.t1 is derived from g1248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12531443	12531748	.	+	.	Ledus.S1G123300
Ledus.S1	AUGUSTUS	transcript	12531443	12531748	.	+	.	transcript_id "Ledus.S1G123300.t1"; gene_id "Ledus.S1G123300"
Ledus.S1	AUGUSTUS	start_codon	12531443	12531445	.	+	0	transcript_id "Ledus.S1G123300.t1"; gene_id "Ledus.S1G123300"
Ledus.S1	AUGUSTUS	CDS	12531443	12531748	0.71	+	0	transcript_id "Ledus.S1G123300.t1"; gene_id "Ledus.S1G123300"
Ledus.S1	AUGUSTUS	exon	12531443	12531748	.	+	.	transcript_id "Ledus.S1G123300.t1"; gene_id "Ledus.S1G123300"
Ledus.S1	AUGUSTUS	stop_codon	12531749	12531751	.	+	0	transcript_id "Ledus.S1G123300.t1"; gene_id "Ledus.S1G123300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3622.t1 is derived from g1058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10243193	10243528	.	+	.	Ledus.S1G104300
Ledus.S1	AUGUSTUS	transcript	10243193	10243528	.	+	.	transcript_id "Ledus.S1G104300.t1"; gene_id "Ledus.S1G104300"
Ledus.S1	AUGUSTUS	start_codon	10243193	10243195	.	+	0	transcript_id "Ledus.S1G104300.t1"; gene_id "Ledus.S1G104300"
Ledus.S1	AUGUSTUS	CDS	10243193	10243528	0.66	+	0	transcript_id "Ledus.S1G104300.t1"; gene_id "Ledus.S1G104300"
Ledus.S1	AUGUSTUS	exon	10243193	10243528	.	+	.	transcript_id "Ledus.S1G104300.t1"; gene_id "Ledus.S1G104300"
Ledus.S1	AUGUSTUS	stop_codon	10243529	10243531	.	+	0	transcript_id "Ledus.S1G104300.t1"; gene_id "Ledus.S1G104300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12580.t1 is derived from g6202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12968154	12969863	.	-	.	Ledus.S4G173600
Ledus.S4	AUGUSTUS	transcript	12968154	12969863	.	-	.	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	stop_codon	12968151	12968153	.	-	0	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	CDS	12968154	12968233	0.98	-	2	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	exon	12968154	12968233	.	-	.	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	intron	12968234	12968384	.	-	.	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	CDS	12968385	12968509	0.99	-	1	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	exon	12968385	12968509	.	-	.	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	intron	12968510	12968653	.	-	.	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	CDS	12968654	12968772	1	-	0	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	exon	12968654	12968772	.	-	.	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	intron	12968773	12968910	.	-	.	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	CDS	12968911	12969089	1	-	2	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	exon	12968911	12969089	.	-	.	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	intron	12969090	12969180	.	-	.	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	CDS	12969181	12969609	1	-	2	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	exon	12969181	12969609	.	-	.	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	intron	12969610	12969712	.	-	.	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	CDS	12969713	12969863	0.6	-	0	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	exon	12969713	12969863	.	-	.	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
Ledus.S4	AUGUSTUS	start_codon	12969861	12969863	.	-	0	transcript_id "Ledus.S4G173600.t1"; gene_id "Ledus.S4G173600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11295.t1 is derived from g4913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3435027	3436449	.	-	.	Ledus.S4G045100
Ledus.S4	AUGUSTUS	transcript	3435027	3436449	.	-	.	transcript_id "Ledus.S4G045100.t1"; gene_id "Ledus.S4G045100"
Ledus.S4	AUGUSTUS	stop_codon	3435024	3435026	.	-	0	transcript_id "Ledus.S4G045100.t1"; gene_id "Ledus.S4G045100"
Ledus.S4	AUGUSTUS	CDS	3435027	3435043	1	-	2	transcript_id "Ledus.S4G045100.t1"; gene_id "Ledus.S4G045100"
Ledus.S4	AUGUSTUS	exon	3435027	3435043	.	-	.	transcript_id "Ledus.S4G045100.t1"; gene_id "Ledus.S4G045100"
Ledus.S4	AUGUSTUS	intron	3435044	3435123	.	-	.	transcript_id "Ledus.S4G045100.t1"; gene_id "Ledus.S4G045100"
Ledus.S4	AUGUSTUS	CDS	3435124	3435319	1	-	0	transcript_id "Ledus.S4G045100.t1"; gene_id "Ledus.S4G045100"
Ledus.S4	AUGUSTUS	exon	3435124	3435319	.	-	.	transcript_id "Ledus.S4G045100.t1"; gene_id "Ledus.S4G045100"
Ledus.S4	AUGUSTUS	intron	3435320	3435456	.	-	.	transcript_id "Ledus.S4G045100.t1"; gene_id "Ledus.S4G045100"
Ledus.S4	AUGUSTUS	CDS	3435457	3436449	0.77	-	0	transcript_id "Ledus.S4G045100.t1"; gene_id "Ledus.S4G045100"
Ledus.S4	AUGUSTUS	exon	3435457	3436449	.	-	.	transcript_id "Ledus.S4G045100.t1"; gene_id "Ledus.S4G045100"
Ledus.S4	AUGUSTUS	start_codon	3436447	3436449	.	-	0	transcript_id "Ledus.S4G045100.t1"; gene_id "Ledus.S4G045100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg866.t1 is derived from g7727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5832553	5832933	.	-	.	Ledus.S2G074800
Ledus.S2	AUGUSTUS	transcript	5832553	5832933	.	-	.	transcript_id "Ledus.S2G074800.t1"; gene_id "Ledus.S2G074800"
Ledus.S2	AUGUSTUS	stop_codon	5832550	5832552	.	-	0	transcript_id "Ledus.S2G074800.t1"; gene_id "Ledus.S2G074800"
Ledus.S2	AUGUSTUS	CDS	5832553	5832933	0.32	-	0	transcript_id "Ledus.S2G074800.t1"; gene_id "Ledus.S2G074800"
Ledus.S2	AUGUSTUS	exon	5832553	5832933	.	-	.	transcript_id "Ledus.S2G074800.t1"; gene_id "Ledus.S2G074800"
Ledus.S2	AUGUSTUS	start_codon	5832931	5832933	.	-	0	transcript_id "Ledus.S2G074800.t1"; gene_id "Ledus.S2G074800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10704.t1 is derived from g11734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17284952	17285200	.	-	.	Ledus.S3G218100
Ledus.S3	AUGUSTUS	transcript	17284952	17285200	.	-	.	transcript_id "Ledus.S3G218100.t1"; gene_id "Ledus.S3G218100"
Ledus.S3	AUGUSTUS	stop_codon	17284949	17284951	.	-	0	transcript_id "Ledus.S3G218100.t1"; gene_id "Ledus.S3G218100"
Ledus.S3	AUGUSTUS	CDS	17284952	17285200	0.54	-	0	transcript_id "Ledus.S3G218100.t1"; gene_id "Ledus.S3G218100"
Ledus.S3	AUGUSTUS	exon	17284952	17285200	.	-	.	transcript_id "Ledus.S3G218100.t1"; gene_id "Ledus.S3G218100"
Ledus.S3	AUGUSTUS	start_codon	17285198	17285200	.	-	0	transcript_id "Ledus.S3G218100.t1"; gene_id "Ledus.S3G218100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2228.t1 is derived from g9091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16182410	16182738	.	+	.	Ledus.S2G211000
Ledus.S2	AUGUSTUS	transcript	16182410	16182738	.	+	.	transcript_id "Ledus.S2G211000.t1"; gene_id "Ledus.S2G211000"
Ledus.S2	AUGUSTUS	start_codon	16182410	16182412	.	+	0	transcript_id "Ledus.S2G211000.t1"; gene_id "Ledus.S2G211000"
Ledus.S2	AUGUSTUS	CDS	16182410	16182415	0.88	+	0	transcript_id "Ledus.S2G211000.t1"; gene_id "Ledus.S2G211000"
Ledus.S2	AUGUSTUS	exon	16182410	16182415	.	+	.	transcript_id "Ledus.S2G211000.t1"; gene_id "Ledus.S2G211000"
Ledus.S2	AUGUSTUS	intron	16182416	16182489	.	+	.	transcript_id "Ledus.S2G211000.t1"; gene_id "Ledus.S2G211000"
Ledus.S2	AUGUSTUS	CDS	16182490	16182738	0.88	+	0	transcript_id "Ledus.S2G211000.t1"; gene_id "Ledus.S2G211000"
Ledus.S2	AUGUSTUS	exon	16182490	16182738	.	+	.	transcript_id "Ledus.S2G211000.t1"; gene_id "Ledus.S2G211000"
Ledus.S2	AUGUSTUS	stop_codon	16182739	16182741	.	+	0	transcript_id "Ledus.S2G211000.t1"; gene_id "Ledus.S2G211000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4229.t1 is derived from g1665.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15661217	15667332	.	+	.	Ledus.S1G165000
Ledus.S1	AUGUSTUS	transcript	15661217	15667332	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	start_codon	15661217	15661219	.	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15661217	15661440	0.75	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15661217	15661440	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15661441	15661615	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15661616	15661719	1	+	1	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15661616	15661719	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15661720	15661863	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15661864	15662099	0.87	+	2	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15661864	15662099	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15662100	15662247	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15662248	15662252	0.68	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15662248	15662252	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15662253	15662605	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15662606	15662677	0.84	+	1	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15662606	15662677	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15662678	15662846	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15662847	15662922	1	+	1	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15662847	15662922	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15662923	15663017	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15663018	15663116	0.99	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15663018	15663116	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15663117	15663229	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15663230	15663384	0.96	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15663230	15663384	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15663385	15663516	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15663517	15663621	0.97	+	1	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15663517	15663621	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15663622	15663825	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15663826	15663912	1	+	1	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15663826	15663912	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15663913	15664024	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15664025	15664109	1	+	1	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15664025	15664109	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15664110	15664186	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15664187	15664334	1	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15664187	15664334	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15664335	15664542	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15664543	15664619	1	+	2	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15664543	15664619	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15664620	15664757	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15664758	15664838	1	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15664758	15664838	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15664839	15665067	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15665068	15665259	1	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15665068	15665259	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15665260	15665353	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15665354	15665467	1	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15665354	15665467	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15665468	15665672	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15665673	15665765	1	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15665673	15665765	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15665766	15665970	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15665971	15666103	1	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15665971	15666103	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666104	15666245	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666246	15666322	1	+	2	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666246	15666322	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666323	15666452	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666453	15666500	1	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666453	15666500	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666501	15666628	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666629	15666698	1	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666629	15666698	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666699	15666806	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666807	15666880	1	+	2	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666807	15666880	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666881	15666972	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666973	15667083	1	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666973	15667083	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15667084	15667233	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15667234	15667332	0.85	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15667234	15667332	.	+	.	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	stop_codon	15667333	15667335	.	+	0	transcript_id "Ledus.S1G165000.t1"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	transcript	15661217	15667332	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	start_codon	15661217	15661219	.	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15661217	15661440	0.78	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15661217	15661440	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15661441	15661615	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15661616	15661719	1	+	1	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15661616	15661719	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15661720	15661863	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15661864	15662099	0.61	+	2	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15661864	15662099	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15662100	15662204	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15662205	15662503	0.97	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15662205	15662503	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15662504	15662605	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15662606	15662677	0.99	+	1	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15662606	15662677	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15662678	15662846	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15662847	15662922	1	+	1	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15662847	15662922	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15662923	15663017	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15663018	15663116	0.99	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15663018	15663116	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15663117	15663229	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15663230	15663384	0.89	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15663230	15663384	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15663385	15663516	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15663517	15663621	0.92	+	1	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15663517	15663621	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15663622	15663825	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15663826	15663912	1	+	1	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15663826	15663912	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15663913	15664024	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15664025	15664109	1	+	1	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15664025	15664109	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15664110	15664186	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15664187	15664334	1	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15664187	15664334	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15664335	15664542	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15664543	15664619	1	+	2	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15664543	15664619	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15664620	15664757	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15664758	15664838	1	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15664758	15664838	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15664839	15665067	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15665068	15665259	1	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15665068	15665259	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15665260	15665353	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15665354	15665467	1	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15665354	15665467	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15665468	15665672	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15665673	15665765	1	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15665673	15665765	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15665766	15665970	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15665971	15666103	1	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15665971	15666103	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666104	15666245	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666246	15666322	1	+	2	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666246	15666322	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666323	15666452	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666453	15666500	1	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666453	15666500	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666501	15666628	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666629	15666698	1	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666629	15666698	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666699	15666806	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666807	15666880	1	+	2	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666807	15666880	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666881	15666972	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666973	15667083	1	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666973	15667083	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15667084	15667233	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15667234	15667332	0.83	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15667234	15667332	.	+	.	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	stop_codon	15667333	15667335	.	+	0	transcript_id "Ledus.S1G165000.t2"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	transcript	15661217	15667332	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	start_codon	15661217	15661219	.	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15661217	15661440	0.68	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15661217	15661440	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15661441	15661609	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15661610	15661719	1	+	1	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15661610	15661719	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15661720	15661863	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15661864	15662099	0.85	+	2	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15661864	15662099	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15662100	15662247	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15662248	15662252	0.57	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15662248	15662252	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15662253	15662605	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15662606	15662677	0.74	+	1	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15662606	15662677	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15662678	15662846	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15662847	15662922	1	+	1	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15662847	15662922	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15662923	15663017	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15663018	15663116	0.99	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15663018	15663116	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15663117	15663229	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15663230	15663384	0.96	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15663230	15663384	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15663385	15663516	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15663517	15663621	0.98	+	1	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15663517	15663621	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15663622	15663825	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15663826	15663912	1	+	1	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15663826	15663912	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15663913	15664024	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15664025	15664109	1	+	1	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15664025	15664109	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15664110	15664186	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15664187	15664334	1	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15664187	15664334	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15664335	15664542	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15664543	15664619	1	+	2	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15664543	15664619	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15664620	15664757	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15664758	15664838	1	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15664758	15664838	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15664839	15665067	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15665068	15665259	1	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15665068	15665259	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15665260	15665353	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15665354	15665467	1	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15665354	15665467	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15665468	15665672	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15665673	15665765	1	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15665673	15665765	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15665766	15665970	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15665971	15666103	1	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15665971	15666103	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666104	15666245	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666246	15666322	1	+	2	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666246	15666322	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666323	15666452	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666453	15666500	1	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666453	15666500	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666501	15666628	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666629	15666698	1	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666629	15666698	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666699	15666806	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666807	15666880	1	+	2	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666807	15666880	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15666881	15666972	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15666973	15667083	1	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15666973	15667083	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	intron	15667084	15667233	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	CDS	15667234	15667332	0.77	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	exon	15667234	15667332	.	+	.	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
Ledus.S1	AUGUSTUS	stop_codon	15667333	15667335	.	+	0	transcript_id "Ledus.S1G165000.t3"; gene_id "Ledus.S1G165000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2352.t1 is derived from g9215.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17402220	17404845	.	-	.	Ledus.S2G223400
Ledus.S2	AUGUSTUS	transcript	17402220	17404845	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	stop_codon	17402217	17402219	.	-	0	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17402220	17402335	1	-	2	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17402220	17402335	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17402336	17402624	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17402625	17402673	1	-	0	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17402625	17402673	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17402674	17402770	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17402771	17402821	1	-	0	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17402771	17402821	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17402822	17402919	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17402920	17402983	1	-	1	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17402920	17402983	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17402984	17403090	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17403091	17403167	0.75	-	0	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17403091	17403167	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17403168	17403246	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17403247	17403366	1	-	0	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17403247	17403366	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17403367	17403479	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17403480	17403556	0.86	-	2	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17403480	17403556	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17403557	17403649	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17403650	17403705	1	-	1	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17403650	17403705	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17403706	17403806	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17403807	17403848	0.99	-	1	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17403807	17403848	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17403849	17403949	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17403950	17404065	0.99	-	0	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17403950	17404065	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17404066	17404313	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17404314	17404484	1	-	0	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17404314	17404484	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17404485	17404596	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17404597	17404845	0.61	-	0	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17404597	17404845	.	-	.	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	start_codon	17404843	17404845	.	-	0	transcript_id "Ledus.S2G223400.t1"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	transcript	17402220	17404845	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	stop_codon	17402217	17402219	.	-	0	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17402220	17402335	1	-	2	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17402220	17402335	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17402336	17402624	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17402625	17402673	1	-	0	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17402625	17402673	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17402674	17402770	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17402771	17402821	1	-	0	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17402771	17402821	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17402822	17402919	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17402920	17402983	1	-	1	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17402920	17402983	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17402984	17403090	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17403091	17403167	0.84	-	0	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17403091	17403167	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17403168	17403246	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17403247	17403366	1	-	0	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17403247	17403366	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17403367	17403479	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17403480	17403556	0.9	-	2	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17403480	17403556	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17403557	17403649	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17403650	17403705	1	-	1	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17403650	17403705	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17403706	17403806	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17403807	17403848	0.9	-	1	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17403807	17403848	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17403849	17404005	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17404006	17404065	0.53	-	1	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17404006	17404065	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17404066	17404150	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17404151	17404209	0.61	-	0	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17404151	17404209	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17404210	17404313	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17404314	17404484	1	-	0	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17404314	17404484	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	intron	17404485	17404596	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	CDS	17404597	17404845	0.56	-	0	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	exon	17404597	17404845	.	-	.	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
Ledus.S2	AUGUSTUS	start_codon	17404843	17404845	.	-	0	transcript_id "Ledus.S2G223400.t2"; gene_id "Ledus.S2G223400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2287.t1 is derived from g9150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16965688	16967304	.	+	.	Ledus.S2G216900
Ledus.S2	AUGUSTUS	transcript	16965688	16967304	.	+	.	transcript_id "Ledus.S2G216900.t1"; gene_id "Ledus.S2G216900"
Ledus.S2	AUGUSTUS	start_codon	16965688	16965690	.	+	0	transcript_id "Ledus.S2G216900.t1"; gene_id "Ledus.S2G216900"
Ledus.S2	AUGUSTUS	CDS	16965688	16967304	0.89	+	0	transcript_id "Ledus.S2G216900.t1"; gene_id "Ledus.S2G216900"
Ledus.S2	AUGUSTUS	exon	16965688	16967304	.	+	.	transcript_id "Ledus.S2G216900.t1"; gene_id "Ledus.S2G216900"
Ledus.S2	AUGUSTUS	stop_codon	16967305	16967307	.	+	0	transcript_id "Ledus.S2G216900.t1"; gene_id "Ledus.S2G216900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7221.t1 is derived from g6469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C13	AUGUSTUS	gene	78686	78913	.	+	.	Ledus.C13G000400
Ledus.C13	AUGUSTUS	transcript	78686	78913	.	+	.	transcript_id "Ledus.C13G000400.t1"; gene_id "Ledus.C13G000400"
Ledus.C13	AUGUSTUS	start_codon	78686	78688	.	+	0	transcript_id "Ledus.C13G000400.t1"; gene_id "Ledus.C13G000400"
Ledus.C13	AUGUSTUS	CDS	78686	78913	0.97	+	0	transcript_id "Ledus.C13G000400.t1"; gene_id "Ledus.C13G000400"
Ledus.C13	AUGUSTUS	exon	78686	78913	.	+	.	transcript_id "Ledus.C13G000400.t1"; gene_id "Ledus.C13G000400"
Ledus.C13	AUGUSTUS	stop_codon	78914	78916	.	+	0	transcript_id "Ledus.C13G000400.t1"; gene_id "Ledus.C13G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10968.t1 is derived from g4586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	939095	944298	.	+	.	Ledus.S4G012400
Ledus.S4	AUGUSTUS	transcript	939095	944298	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	start_codon	939095	939097	.	+	0	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	939095	939553	0.69	+	0	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	939095	939553	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	intron	939554	939639	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	939640	939694	1	+	0	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	939640	939694	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	intron	939695	939769	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	939770	939945	1	+	2	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	939770	939945	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	intron	939946	940030	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	940031	940252	1	+	0	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	940031	940252	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	intron	940253	940335	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	940336	940574	1	+	0	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	940336	940574	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	intron	940575	940666	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	940667	941192	1	+	1	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	940667	941192	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	intron	941193	941272	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	941273	941546	1	+	0	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	941273	941546	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	intron	941547	941648	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	941649	941841	1	+	2	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	941649	941841	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	intron	941842	941974	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	941975	942469	1	+	1	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	941975	942469	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	intron	942470	942566	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	942567	942795	1	+	1	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	942567	942795	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	intron	942796	942886	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	942887	943153	1	+	0	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	942887	943153	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	intron	943154	943250	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	943251	943514	1	+	0	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	943251	943514	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	intron	943515	943602	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	CDS	943603	944298	0.96	+	0	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	exon	943603	944298	.	+	.	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
Ledus.S4	AUGUSTUS	stop_codon	944299	944301	.	+	0	transcript_id "Ledus.S4G012400.t1"; gene_id "Ledus.S4G012400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3747.t1 is derived from g1183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11550505	11550960	.	-	.	Ledus.S1G116800
Ledus.S1	AUGUSTUS	transcript	11550505	11550960	.	-	.	transcript_id "Ledus.S1G116800.t1"; gene_id "Ledus.S1G116800"
Ledus.S1	AUGUSTUS	stop_codon	11550502	11550504	.	-	0	transcript_id "Ledus.S1G116800.t1"; gene_id "Ledus.S1G116800"
Ledus.S1	AUGUSTUS	CDS	11550505	11550960	0.31	-	0	transcript_id "Ledus.S1G116800.t1"; gene_id "Ledus.S1G116800"
Ledus.S1	AUGUSTUS	exon	11550505	11550960	.	-	.	transcript_id "Ledus.S1G116800.t1"; gene_id "Ledus.S1G116800"
Ledus.S1	AUGUSTUS	start_codon	11550958	11550960	.	-	0	transcript_id "Ledus.S1G116800.t1"; gene_id "Ledus.S1G116800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2298.t1 is derived from g9161.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17087761	17092701	.	-	.	Ledus.S2G218000
Ledus.S2	AUGUSTUS	transcript	17087761	17092701	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	stop_codon	17087758	17087760	.	-	0	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17087761	17087897	0.99	-	2	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17087761	17087897	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17087898	17087985	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17087986	17088045	1	-	2	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17087986	17088045	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17088046	17088133	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17088134	17088280	0.41	-	2	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17088134	17088280	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17088281	17088438	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17088439	17088541	0.96	-	0	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17088439	17088541	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17088542	17088668	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17088669	17088784	1	-	2	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17088669	17088784	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17088785	17088878	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17088879	17088966	1	-	0	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17088879	17088966	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17088967	17089066	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17089067	17089314	1	-	2	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17089067	17089314	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17089315	17089415	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17089416	17089482	0.76	-	0	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17089416	17089482	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17089483	17089586	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17089587	17089681	0.57	-	2	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17089587	17089681	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17089682	17089860	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17089861	17090271	0.69	-	2	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17089861	17090271	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17090272	17090369	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17090370	17090461	1	-	1	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17090370	17090461	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17090462	17090572	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17090573	17090652	0.99	-	0	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17090573	17090652	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17090653	17090746	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17090747	17090842	0.99	-	0	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17090747	17090842	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17090843	17090944	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17090945	17091064	0.94	-	0	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17090945	17091064	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17091065	17091199	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17091200	17091280	1	-	0	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17091200	17091280	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17091281	17091395	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17091396	17091479	0.95	-	0	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17091396	17091479	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17091480	17091628	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17091629	17091699	0.99	-	2	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17091629	17091699	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17091700	17091841	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17091842	17091936	1	-	1	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17091842	17091936	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17091937	17092013	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17092014	17092087	1	-	0	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17092014	17092087	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17092088	17092191	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17092192	17092487	1	-	2	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17092192	17092487	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17092488	17092574	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17092575	17092701	0.97	-	0	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17092575	17092701	.	-	.	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	start_codon	17092699	17092701	.	-	0	transcript_id "Ledus.S2G218000.t1"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	transcript	17087761	17092701	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	stop_codon	17087758	17087760	.	-	0	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17087761	17087897	1	-	2	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17087761	17087897	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17087898	17087985	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17087986	17088045	1	-	2	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17087986	17088045	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17088046	17088133	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17088134	17088280	0.39	-	2	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17088134	17088280	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17088281	17088438	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17088439	17088541	0.97	-	0	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17088439	17088541	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17088542	17088668	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17088669	17088784	1	-	2	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17088669	17088784	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17088785	17088878	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17088879	17088966	1	-	0	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17088879	17088966	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17088967	17089066	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17089067	17089314	1	-	2	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17089067	17089314	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17089315	17089415	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17089416	17089482	0.81	-	0	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17089416	17089482	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17089483	17089586	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17089587	17089681	0.6	-	2	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17089587	17089681	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17089682	17089860	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17089861	17090271	0.82	-	2	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17089861	17090271	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17090272	17090369	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17090370	17090461	1	-	1	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17090370	17090461	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17090462	17090572	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17090573	17090652	1	-	0	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17090573	17090652	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17090653	17090746	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17090747	17090842	0.99	-	0	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17090747	17090842	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17090843	17090944	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17090945	17091064	0.96	-	0	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17090945	17091064	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17091065	17091199	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17091200	17091280	1	-	0	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17091200	17091280	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17091281	17091395	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17091396	17091479	0.93	-	0	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17091396	17091479	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17091480	17091606	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17091607	17091704	0.75	-	2	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17091607	17091704	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17091705	17091841	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17091842	17091936	1	-	1	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17091842	17091936	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17091937	17092013	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17092014	17092087	1	-	0	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17092014	17092087	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17092088	17092191	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17092192	17092487	1	-	2	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17092192	17092487	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	intron	17092488	17092574	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	CDS	17092575	17092701	1	-	0	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	exon	17092575	17092701	.	-	.	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
Ledus.S2	AUGUSTUS	start_codon	17092699	17092701	.	-	0	transcript_id "Ledus.S2G218000.t2"; gene_id "Ledus.S2G218000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1680.t1 is derived from g8541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11811266	11815020	.	+	.	Ledus.S2G156200
Ledus.S2	AUGUSTUS	transcript	11811266	11815020	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	start_codon	11811266	11811268	.	+	0	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	CDS	11811266	11811307	0.33	+	0	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	exon	11811266	11811307	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	intron	11811308	11811410	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	CDS	11811411	11811534	0.91	+	0	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	exon	11811411	11811534	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	intron	11811535	11811634	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	CDS	11811635	11811825	1	+	2	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	exon	11811635	11811825	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	intron	11811826	11811925	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	CDS	11811926	11812021	1	+	0	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	exon	11811926	11812021	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	intron	11812022	11812175	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	CDS	11812176	11812595	0.93	+	0	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	exon	11812176	11812595	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	intron	11812596	11812790	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	CDS	11812791	11814657	0.79	+	0	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	exon	11812791	11814657	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	intron	11814658	11814811	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	CDS	11814812	11814922	0.38	+	2	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	exon	11814812	11814922	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	intron	11814923	11815006	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	CDS	11815007	11815020	0.55	+	2	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	exon	11815007	11815020	.	+	.	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
Ledus.S2	AUGUSTUS	stop_codon	11815021	11815023	.	+	0	transcript_id "Ledus.S2G156200.t1"; gene_id "Ledus.S2G156200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7354.t1 is derived from g12025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1418697	1421376	.	+	.	Ledus.S5G013200
Ledus.S5	AUGUSTUS	transcript	1418697	1421376	.	+	.	transcript_id "Ledus.S5G013200.t1"; gene_id "Ledus.S5G013200"
Ledus.S5	AUGUSTUS	start_codon	1418697	1418699	.	+	0	transcript_id "Ledus.S5G013200.t1"; gene_id "Ledus.S5G013200"
Ledus.S5	AUGUSTUS	CDS	1418697	1419053	0.37	+	0	transcript_id "Ledus.S5G013200.t1"; gene_id "Ledus.S5G013200"
Ledus.S5	AUGUSTUS	exon	1418697	1419053	.	+	.	transcript_id "Ledus.S5G013200.t1"; gene_id "Ledus.S5G013200"
Ledus.S5	AUGUSTUS	intron	1419054	1419168	.	+	.	transcript_id "Ledus.S5G013200.t1"; gene_id "Ledus.S5G013200"
Ledus.S5	AUGUSTUS	CDS	1419169	1421376	0.76	+	0	transcript_id "Ledus.S5G013200.t1"; gene_id "Ledus.S5G013200"
Ledus.S5	AUGUSTUS	exon	1419169	1421376	.	+	.	transcript_id "Ledus.S5G013200.t1"; gene_id "Ledus.S5G013200"
Ledus.S5	AUGUSTUS	stop_codon	1421377	1421379	.	+	0	transcript_id "Ledus.S5G013200.t1"; gene_id "Ledus.S5G013200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4793.t1 is derived from g2231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19800591	19800821	.	+	.	Ledus.S1G221400
Ledus.S1	AUGUSTUS	transcript	19800591	19800821	.	+	.	transcript_id "Ledus.S1G221400.t1"; gene_id "Ledus.S1G221400"
Ledus.S1	AUGUSTUS	start_codon	19800591	19800593	.	+	0	transcript_id "Ledus.S1G221400.t1"; gene_id "Ledus.S1G221400"
Ledus.S1	AUGUSTUS	CDS	19800591	19800821	0.17	+	0	transcript_id "Ledus.S1G221400.t1"; gene_id "Ledus.S1G221400"
Ledus.S1	AUGUSTUS	exon	19800591	19800821	.	+	.	transcript_id "Ledus.S1G221400.t1"; gene_id "Ledus.S1G221400"
Ledus.S1	AUGUSTUS	stop_codon	19800822	19800824	.	+	0	transcript_id "Ledus.S1G221400.t1"; gene_id "Ledus.S1G221400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7395.t1 is derived from g12066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2061825	2064728	.	-	.	Ledus.S5G017300
Ledus.S5	AUGUSTUS	transcript	2061825	2064728	.	-	.	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	stop_codon	2061822	2061824	.	-	0	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	CDS	2061825	2062147	1	-	2	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	exon	2061825	2062147	.	-	.	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	intron	2062148	2062446	.	-	.	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	CDS	2062447	2063587	1	-	0	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	exon	2062447	2063587	.	-	.	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	intron	2063588	2063688	.	-	.	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	CDS	2063689	2063739	0.99	-	0	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	exon	2063689	2063739	.	-	.	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	intron	2063740	2063849	.	-	.	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	CDS	2063850	2064728	0.83	-	0	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	exon	2063850	2064728	.	-	.	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
Ledus.S5	AUGUSTUS	start_codon	2064726	2064728	.	-	0	transcript_id "Ledus.S5G017300.t1"; gene_id "Ledus.S5G017300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11013.t1 is derived from g4631.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1095623	1097096	.	-	.	Ledus.S4G016900
Ledus.S4	AUGUSTUS	transcript	1095623	1096818	.	-	.	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	stop_codon	1095620	1095622	.	-	0	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1095623	1095821	1	-	1	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1095623	1095821	.	-	.	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	intron	1095822	1096005	.	-	.	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1096006	1096130	1	-	0	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1096006	1096130	.	-	.	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	intron	1096131	1096204	.	-	.	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1096205	1096267	1	-	0	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1096205	1096267	.	-	.	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	intron	1096268	1096354	.	-	.	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1096355	1096483	1	-	0	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1096355	1096483	.	-	.	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	intron	1096484	1096556	.	-	.	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1096557	1096637	1	-	0	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1096557	1096637	.	-	.	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	intron	1096638	1096728	.	-	.	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1096729	1096818	0.71	-	0	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1096729	1096818	.	-	.	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	start_codon	1096816	1096818	.	-	0	transcript_id "Ledus.S4G016900.t1"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	transcript	1095623	1097096	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	stop_codon	1095620	1095622	.	-	0	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1095623	1095821	1	-	1	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1095623	1095821	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	intron	1095822	1096005	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1096006	1096130	1	-	0	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1096006	1096130	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	intron	1096131	1096204	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1096205	1096267	1	-	0	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1096205	1096267	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	intron	1096268	1096354	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1096355	1096483	1	-	0	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1096355	1096483	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	intron	1096484	1096556	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1096557	1096637	1	-	0	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1096557	1096637	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	intron	1096638	1096728	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1096729	1096828	0.81	-	1	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1096729	1096828	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	intron	1096829	1097043	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	CDS	1097044	1097096	0.77	-	0	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	exon	1097044	1097096	.	-	.	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
Ledus.S4	AUGUSTUS	start_codon	1097094	1097096	.	-	0	transcript_id "Ledus.S4G016900.t2"; gene_id "Ledus.S4G016900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4416.t1 is derived from g1852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16971660	16974399	.	+	.	Ledus.S1G183700
Ledus.S1	AUGUSTUS	transcript	16971660	16974399	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	start_codon	16971660	16971662	.	+	0	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16971660	16971674	0.58	+	0	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16971660	16971674	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16971675	16971830	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16971831	16971920	0.69	+	0	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16971831	16971920	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16971921	16971994	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16971995	16972009	0.5	+	0	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16971995	16972009	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16972010	16972183	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16972184	16972254	0.81	+	0	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16972184	16972254	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16972255	16972500	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16972501	16972615	1	+	1	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16972501	16972615	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16972616	16972684	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16972685	16972764	0.96	+	0	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16972685	16972764	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16972765	16972880	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16972881	16972965	0.91	+	1	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16972881	16972965	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16972966	16973066	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16973067	16973147	0.96	+	0	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16973067	16973147	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16973148	16973255	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16973256	16973350	0.99	+	0	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16973256	16973350	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16973351	16973458	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16973459	16973509	1	+	1	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16973459	16973509	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16973510	16973653	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16973654	16973734	1	+	1	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16973654	16973734	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16973735	16973820	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16973821	16973893	1	+	1	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16973821	16973893	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16973894	16973989	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16973990	16974195	0.67	+	0	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16973990	16974195	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	intron	16974196	16974395	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	CDS	16974396	16974399	0.68	+	1	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	exon	16974396	16974399	.	+	.	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
Ledus.S1	AUGUSTUS	stop_codon	16974400	16974402	.	+	0	transcript_id "Ledus.S1G183700.t1"; gene_id "Ledus.S1G183700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6815.t1 is derived from g4259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34420027	34420322	.	-	.	Ledus.S1G423600
Ledus.S1	AUGUSTUS	transcript	34420027	34420322	.	-	.	transcript_id "Ledus.S1G423600.t1"; gene_id "Ledus.S1G423600"
Ledus.S1	AUGUSTUS	stop_codon	34420024	34420026	.	-	0	transcript_id "Ledus.S1G423600.t1"; gene_id "Ledus.S1G423600"
Ledus.S1	AUGUSTUS	CDS	34420027	34420127	0.98	-	2	transcript_id "Ledus.S1G423600.t1"; gene_id "Ledus.S1G423600"
Ledus.S1	AUGUSTUS	exon	34420027	34420127	.	-	.	transcript_id "Ledus.S1G423600.t1"; gene_id "Ledus.S1G423600"
Ledus.S1	AUGUSTUS	intron	34420128	34420219	.	-	.	transcript_id "Ledus.S1G423600.t1"; gene_id "Ledus.S1G423600"
Ledus.S1	AUGUSTUS	CDS	34420220	34420322	0.98	-	0	transcript_id "Ledus.S1G423600.t1"; gene_id "Ledus.S1G423600"
Ledus.S1	AUGUSTUS	exon	34420220	34420322	.	-	.	transcript_id "Ledus.S1G423600.t1"; gene_id "Ledus.S1G423600"
Ledus.S1	AUGUSTUS	start_codon	34420320	34420322	.	-	0	transcript_id "Ledus.S1G423600.t1"; gene_id "Ledus.S1G423600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6573.t1 is derived from g4016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32451834	32452447	.	-	.	Ledus.S1G399400
Ledus.S1	AUGUSTUS	transcript	32451834	32452447	.	-	.	transcript_id "Ledus.S1G399400.t1"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	stop_codon	32451831	32451833	.	-	0	transcript_id "Ledus.S1G399400.t1"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	CDS	32451834	32451991	0.99	-	2	transcript_id "Ledus.S1G399400.t1"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	exon	32451834	32451991	.	-	.	transcript_id "Ledus.S1G399400.t1"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	intron	32451992	32452070	.	-	.	transcript_id "Ledus.S1G399400.t1"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	CDS	32452071	32452215	1	-	0	transcript_id "Ledus.S1G399400.t1"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	exon	32452071	32452215	.	-	.	transcript_id "Ledus.S1G399400.t1"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	intron	32452216	32452309	.	-	.	transcript_id "Ledus.S1G399400.t1"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	CDS	32452310	32452447	1	-	0	transcript_id "Ledus.S1G399400.t1"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	exon	32452310	32452447	.	-	.	transcript_id "Ledus.S1G399400.t1"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	start_codon	32452445	32452447	.	-	0	transcript_id "Ledus.S1G399400.t1"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	transcript	32451834	32452447	.	-	.	transcript_id "Ledus.S1G399400.t2"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	stop_codon	32451831	32451833	.	-	0	transcript_id "Ledus.S1G399400.t2"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	CDS	32451834	32451991	0.99	-	2	transcript_id "Ledus.S1G399400.t2"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	exon	32451834	32451991	.	-	.	transcript_id "Ledus.S1G399400.t2"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	intron	32451992	32452070	.	-	.	transcript_id "Ledus.S1G399400.t2"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	CDS	32452071	32452215	1	-	0	transcript_id "Ledus.S1G399400.t2"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	exon	32452071	32452215	.	-	.	transcript_id "Ledus.S1G399400.t2"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	intron	32452216	32452378	.	-	.	transcript_id "Ledus.S1G399400.t2"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	CDS	32452379	32452447	1	-	0	transcript_id "Ledus.S1G399400.t2"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	exon	32452379	32452447	.	-	.	transcript_id "Ledus.S1G399400.t2"; gene_id "Ledus.S1G399400"
Ledus.S1	AUGUSTUS	start_codon	32452445	32452447	.	-	0	transcript_id "Ledus.S1G399400.t2"; gene_id "Ledus.S1G399400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8280.t1 is derived from g12951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10401019	10404192	.	+	.	Ledus.S5G105800
Ledus.S5	AUGUSTUS	transcript	10401019	10404192	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	start_codon	10401019	10401021	.	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10401019	10401312	0.7	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10401019	10401312	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	intron	10401313	10401450	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10401451	10401663	1	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10401451	10401663	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	intron	10401664	10401862	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10401863	10401958	1	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10401863	10401958	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	intron	10401959	10402049	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10402050	10402248	1	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10402050	10402248	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	intron	10402249	10402463	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10402464	10402544	1	+	2	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10402464	10402544	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	intron	10402545	10402680	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10402681	10402781	1	+	2	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10402681	10402781	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	intron	10402782	10402870	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10402871	10402963	1	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10402871	10402963	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	intron	10402964	10403054	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10403055	10403126	1	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10403055	10403126	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	intron	10403127	10403214	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10403215	10403334	1	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10403215	10403334	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	intron	10403335	10403474	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10403475	10403525	1	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10403475	10403525	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	intron	10403526	10403654	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10403655	10403843	1	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10403655	10403843	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	intron	10403844	10403966	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10403967	10404077	1	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10403967	10404077	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	intron	10404078	10404174	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	CDS	10404175	10404192	1	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	exon	10404175	10404192	.	+	.	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
Ledus.S5	AUGUSTUS	stop_codon	10404193	10404195	.	+	0	transcript_id "Ledus.S5G105800.t1"; gene_id "Ledus.S5G105800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1014.t1 is derived from g7875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6774664	6777495	.	+	.	Ledus.S2G089600
Ledus.S2	AUGUSTUS	transcript	6774664	6777495	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	start_codon	6774664	6774666	.	+	0	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	CDS	6774664	6775032	1	+	0	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	exon	6774664	6775032	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	intron	6775033	6775230	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	CDS	6775231	6775359	0.99	+	0	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	exon	6775231	6775359	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	intron	6775360	6775470	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	CDS	6775471	6775653	0.99	+	0	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	exon	6775471	6775653	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	intron	6775654	6775878	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	CDS	6775879	6775937	1	+	0	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	exon	6775879	6775937	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	intron	6775938	6776142	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	CDS	6776143	6776303	1	+	1	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	exon	6776143	6776303	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	intron	6776304	6776441	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	CDS	6776442	6776590	0.99	+	2	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	exon	6776442	6776590	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	intron	6776591	6776727	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	CDS	6776728	6776889	1	+	0	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	exon	6776728	6776889	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	intron	6776890	6776987	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	CDS	6776988	6777119	0.95	+	0	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	exon	6776988	6777119	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	intron	6777120	6777291	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	CDS	6777292	6777357	0.76	+	0	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	exon	6777292	6777357	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	intron	6777358	6777444	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	CDS	6777445	6777495	0.55	+	0	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	exon	6777445	6777495	.	+	.	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
Ledus.S2	AUGUSTUS	stop_codon	6777496	6777498	.	+	0	transcript_id "Ledus.S2G089600.t1"; gene_id "Ledus.S2G089600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5152.t1 is derived from g2591.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21980717	21982122	.	+	.	Ledus.S1G257300
Ledus.S1	AUGUSTUS	transcript	21980717	21982122	.	+	.	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	start_codon	21980717	21980719	.	+	0	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	CDS	21980717	21980747	0.87	+	0	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	exon	21980717	21980747	.	+	.	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	intron	21980748	21980830	.	+	.	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	CDS	21980831	21980979	0.53	+	2	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	exon	21980831	21980979	.	+	.	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	intron	21980980	21981129	.	+	.	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	CDS	21981130	21981183	0.45	+	0	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	exon	21981130	21981183	.	+	.	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	intron	21981184	21981262	.	+	.	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	CDS	21981263	21981453	1	+	0	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	exon	21981263	21981453	.	+	.	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	intron	21981454	21981548	.	+	.	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	CDS	21981549	21982122	1	+	1	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	exon	21981549	21982122	.	+	.	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
Ledus.S1	AUGUSTUS	stop_codon	21982123	21982125	.	+	0	transcript_id "Ledus.S1G257300.t1"; gene_id "Ledus.S1G257300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9101.t1 is derived from g10131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4588558	4589513	.	-	.	Ledus.S3G057800
Ledus.S3	AUGUSTUS	transcript	4588558	4589513	.	-	.	transcript_id "Ledus.S3G057800.t1"; gene_id "Ledus.S3G057800"
Ledus.S3	AUGUSTUS	stop_codon	4588555	4588557	.	-	0	transcript_id "Ledus.S3G057800.t1"; gene_id "Ledus.S3G057800"
Ledus.S3	AUGUSTUS	CDS	4588558	4588876	0.4	-	1	transcript_id "Ledus.S3G057800.t1"; gene_id "Ledus.S3G057800"
Ledus.S3	AUGUSTUS	exon	4588558	4588876	.	-	.	transcript_id "Ledus.S3G057800.t1"; gene_id "Ledus.S3G057800"
Ledus.S3	AUGUSTUS	intron	4588877	4589037	.	-	.	transcript_id "Ledus.S3G057800.t1"; gene_id "Ledus.S3G057800"
Ledus.S3	AUGUSTUS	CDS	4589038	4589207	0.3	-	0	transcript_id "Ledus.S3G057800.t1"; gene_id "Ledus.S3G057800"
Ledus.S3	AUGUSTUS	exon	4589038	4589207	.	-	.	transcript_id "Ledus.S3G057800.t1"; gene_id "Ledus.S3G057800"
Ledus.S3	AUGUSTUS	intron	4589208	4589441	.	-	.	transcript_id "Ledus.S3G057800.t1"; gene_id "Ledus.S3G057800"
Ledus.S3	AUGUSTUS	CDS	4589442	4589513	0.43	-	0	transcript_id "Ledus.S3G057800.t1"; gene_id "Ledus.S3G057800"
Ledus.S3	AUGUSTUS	exon	4589442	4589513	.	-	.	transcript_id "Ledus.S3G057800.t1"; gene_id "Ledus.S3G057800"
Ledus.S3	AUGUSTUS	start_codon	4589511	4589513	.	-	0	transcript_id "Ledus.S3G057800.t1"; gene_id "Ledus.S3G057800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5021.t1 is derived from g2459.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21179363	21181386	.	-	.	Ledus.S1G244200
Ledus.S1	AUGUSTUS	transcript	21179363	21181386	.	-	.	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	stop_codon	21179360	21179362	.	-	0	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	CDS	21179363	21179426	1	-	1	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	exon	21179363	21179426	.	-	.	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	intron	21179427	21179513	.	-	.	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	CDS	21179514	21179590	1	-	0	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	exon	21179514	21179590	.	-	.	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	intron	21179591	21179684	.	-	.	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	CDS	21179685	21179842	1	-	2	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	exon	21179685	21179842	.	-	.	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	intron	21179843	21179946	.	-	.	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	CDS	21179947	21180032	1	-	1	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	exon	21179947	21180032	.	-	.	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	intron	21180033	21180133	.	-	.	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	CDS	21180134	21181386	0.52	-	0	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	exon	21180134	21181386	.	-	.	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
Ledus.S1	AUGUSTUS	start_codon	21181384	21181386	.	-	0	transcript_id "Ledus.S1G244200.t1"; gene_id "Ledus.S1G244200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10139.t1 is derived from g11169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13013296	13014367	.	-	.	Ledus.S3G161600
Ledus.S3	AUGUSTUS	transcript	13013296	13014367	.	-	.	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	stop_codon	13013293	13013295	.	-	0	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	CDS	13013296	13013396	0.41	-	2	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	exon	13013296	13013396	.	-	.	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	intron	13013397	13013633	.	-	.	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	CDS	13013634	13013676	0.48	-	0	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	exon	13013634	13013676	.	-	.	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	intron	13013677	13013808	.	-	.	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	CDS	13013809	13013980	0.52	-	1	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	exon	13013809	13013980	.	-	.	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	intron	13013981	13014143	.	-	.	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	CDS	13014144	13014367	0.55	-	0	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	exon	13014144	13014367	.	-	.	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
Ledus.S3	AUGUSTUS	start_codon	13014365	13014367	.	-	0	transcript_id "Ledus.S3G161600.t1"; gene_id "Ledus.S3G161600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3223.t1 is derived from g658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6984446	6985651	.	+	.	Ledus.S1G064400
Ledus.S1	AUGUSTUS	transcript	6984446	6985651	.	+	.	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	start_codon	6984446	6984448	.	+	0	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	CDS	6984446	6984516	1	+	0	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	exon	6984446	6984516	.	+	.	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	intron	6984517	6984594	.	+	.	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	CDS	6984595	6984675	1	+	1	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	exon	6984595	6984675	.	+	.	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	intron	6984676	6984758	.	+	.	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	CDS	6984759	6984875	1	+	1	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	exon	6984759	6984875	.	+	.	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	intron	6984876	6985269	.	+	.	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	CDS	6985270	6985304	1	+	1	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	exon	6985270	6985304	.	+	.	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	intron	6985305	6985386	.	+	.	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	CDS	6985387	6985487	1	+	2	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	exon	6985387	6985487	.	+	.	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	intron	6985488	6985573	.	+	.	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	CDS	6985574	6985651	1	+	0	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	exon	6985574	6985651	.	+	.	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
Ledus.S1	AUGUSTUS	stop_codon	6985652	6985654	.	+	0	transcript_id "Ledus.S1G064400.t1"; gene_id "Ledus.S1G064400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8305.t1 is derived from g12977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10619847	10622119	.	-	.	Ledus.S5G108300
Ledus.S5	AUGUSTUS	transcript	10619847	10622119	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	stop_codon	10619844	10619846	.	-	0	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	CDS	10619847	10620026	1	-	0	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	exon	10619847	10620026	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	intron	10620027	10620186	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	CDS	10620187	10620291	1	-	0	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	exon	10620187	10620291	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	intron	10620292	10620382	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	CDS	10620383	10620483	1	-	2	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	exon	10620383	10620483	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	intron	10620484	10620567	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	CDS	10620568	10620637	1	-	0	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	exon	10620568	10620637	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	intron	10620638	10620732	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	CDS	10620733	10620795	1	-	0	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	exon	10620733	10620795	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	intron	10620796	10620891	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	CDS	10620892	10620958	1	-	1	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	exon	10620892	10620958	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	intron	10620959	10621043	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	CDS	10621044	10621168	1	-	0	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	exon	10621044	10621168	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	intron	10621169	10621243	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	CDS	10621244	10621321	1	-	0	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	exon	10621244	10621321	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	intron	10621322	10621406	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	CDS	10621407	10621453	1	-	2	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	exon	10621407	10621453	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	intron	10621454	10621537	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	CDS	10621538	10621662	1	-	1	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	exon	10621538	10621662	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	intron	10621663	10621760	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	CDS	10621761	10622119	0.72	-	0	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	exon	10621761	10622119	.	-	.	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
Ledus.S5	AUGUSTUS	start_codon	10622117	10622119	.	-	0	transcript_id "Ledus.S5G108300.t1"; gene_id "Ledus.S5G108300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1789.t1 is derived from g8652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12614724	12616562	.	+	.	Ledus.S2G167100
Ledus.S2	AUGUSTUS	transcript	12614724	12616562	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	start_codon	12614724	12614726	.	+	0	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	CDS	12614724	12615051	0.97	+	0	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	exon	12614724	12615051	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	intron	12615052	12615138	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	CDS	12615139	12615248	1	+	2	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	exon	12615139	12615248	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	intron	12615249	12615374	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	CDS	12615375	12615428	1	+	0	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	exon	12615375	12615428	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	intron	12615429	12615521	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	CDS	12615522	12615606	1	+	0	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	exon	12615522	12615606	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	intron	12615607	12615746	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	CDS	12615747	12615852	1	+	2	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	exon	12615747	12615852	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	intron	12615853	12615950	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	CDS	12615951	12616037	1	+	1	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	exon	12615951	12616037	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	intron	12616038	12616130	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	CDS	12616131	12616228	1	+	1	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	exon	12616131	12616228	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	intron	12616229	12616308	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	CDS	12616309	12616418	1	+	2	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	exon	12616309	12616418	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	intron	12616419	12616502	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	CDS	12616503	12616562	1	+	0	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	exon	12616503	12616562	.	+	.	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
Ledus.S2	AUGUSTUS	stop_codon	12616563	12616565	.	+	0	transcript_id "Ledus.S2G167100.t1"; gene_id "Ledus.S2G167100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7950.t1 is derived from g12621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8096847	8097987	.	+	.	Ledus.S5G072800
Ledus.S5	AUGUSTUS	transcript	8096847	8097987	.	+	.	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	start_codon	8096847	8096849	.	+	0	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	CDS	8096847	8097139	0.4	+	0	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	exon	8096847	8097139	.	+	.	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	intron	8097140	8097214	.	+	.	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	CDS	8097215	8097407	0.79	+	1	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	exon	8097215	8097407	.	+	.	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	intron	8097408	8097469	.	+	.	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	CDS	8097470	8097676	0.97	+	0	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	exon	8097470	8097676	.	+	.	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	intron	8097677	8097750	.	+	.	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	CDS	8097751	8097987	0.75	+	0	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	exon	8097751	8097987	.	+	.	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
Ledus.S5	AUGUSTUS	stop_codon	8097988	8097990	.	+	0	transcript_id "Ledus.S5G072800.t1"; gene_id "Ledus.S5G072800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4865.t1 is derived from g2303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20431327	20435707	.	-	.	Ledus.S1G228600
Ledus.S1	AUGUSTUS	transcript	20431327	20435707	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	stop_codon	20431324	20431326	.	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20431327	20431338	1	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20431327	20431338	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20431339	20431422	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20431423	20431536	1	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20431423	20431536	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20431537	20431630	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20431631	20431765	1	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20431631	20431765	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20431766	20431846	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20431847	20432029	1	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20431847	20432029	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20432030	20432111	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20432112	20432153	1	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20432112	20432153	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20432154	20432241	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20432242	20432367	1	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20432242	20432367	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20432368	20432488	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20432489	20432533	0.99	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20432489	20432533	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20432534	20432636	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20432637	20432778	0.59	-	1	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20432637	20432778	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20432779	20432903	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20432904	20432954	0.98	-	1	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20432904	20432954	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20432955	20433051	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20433052	20433130	1	-	2	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20433052	20433130	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20433131	20433264	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20433265	20433314	1	-	1	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20433265	20433314	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20433315	20433387	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20433388	20433502	1	-	2	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20433388	20433502	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20433503	20433594	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20433595	20433703	1	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20433595	20433703	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20433704	20433788	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20433789	20433830	1	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20433789	20433830	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20433831	20433914	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20433915	20434005	1	-	1	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20433915	20434005	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20434006	20434101	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20434102	20434145	1	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20434102	20434145	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20434146	20434278	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20434279	20434314	0.99	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20434279	20434314	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20434315	20434416	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20434417	20434569	0.83	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20434417	20434569	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20434570	20434693	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20434694	20434864	1	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20434694	20434864	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20434865	20435071	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20435072	20435110	1	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20435072	20435110	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20435111	20435237	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20435238	20435282	0.83	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20435238	20435282	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20435283	20435374	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20435375	20435707	0.52	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20435375	20435707	.	-	.	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	start_codon	20435705	20435707	.	-	0	transcript_id "Ledus.S1G228600.t1"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	transcript	20431327	20435707	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	stop_codon	20431324	20431326	.	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20431327	20431338	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20431327	20431338	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20431339	20431422	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20431423	20431536	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20431423	20431536	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20431537	20431630	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20431631	20431765	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20431631	20431765	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20431766	20431852	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20431853	20432029	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20431853	20432029	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20432030	20432111	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20432112	20432153	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20432112	20432153	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20432154	20432241	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20432242	20432367	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20432242	20432367	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20432368	20432488	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20432489	20432533	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20432489	20432533	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20432534	20432636	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20432637	20432778	0.52	-	1	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20432637	20432778	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20432779	20432903	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20432904	20432954	0.9	-	1	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20432904	20432954	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20432955	20433051	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20433052	20433130	1	-	2	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20433052	20433130	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20433131	20433264	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20433265	20433314	1	-	1	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20433265	20433314	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20433315	20433387	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20433388	20433502	1	-	2	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20433388	20433502	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20433503	20433594	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20433595	20433703	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20433595	20433703	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20433704	20433788	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20433789	20433830	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20433789	20433830	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20433831	20433914	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20433915	20434005	1	-	1	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20433915	20434005	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20434006	20434101	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20434102	20434145	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20434102	20434145	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20434146	20434278	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20434279	20434314	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20434279	20434314	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20434315	20434416	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20434417	20434569	0.87	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20434417	20434569	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20434570	20434693	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20434694	20434864	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20434694	20434864	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20434865	20435071	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20435072	20435110	1	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20435072	20435110	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20435111	20435237	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20435238	20435282	0.87	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20435238	20435282	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	intron	20435283	20435374	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	CDS	20435375	20435707	0.48	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	exon	20435375	20435707	.	-	.	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
Ledus.S1	AUGUSTUS	start_codon	20435705	20435707	.	-	0	transcript_id "Ledus.S1G228600.t2"; gene_id "Ledus.S1G228600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg910.t1 is derived from g7771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6086782	6090470	.	+	.	Ledus.S2G079200
Ledus.S2	AUGUSTUS	transcript	6086782	6090470	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	start_codon	6086782	6086784	.	+	0	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6086782	6086851	0.59	+	0	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6086782	6086851	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6086852	6087011	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6087012	6087069	1	+	2	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6087012	6087069	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6087070	6087162	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6087163	6087243	1	+	1	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6087163	6087243	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6087244	6087517	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6087518	6087642	1	+	1	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6087518	6087642	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6087643	6087807	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6087808	6087880	1	+	2	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6087808	6087880	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6087881	6088073	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6088074	6088131	1	+	1	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6088074	6088131	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6088132	6088219	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6088220	6088229	0.59	+	0	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6088220	6088229	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6088230	6088312	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6088313	6088358	1	+	2	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6088313	6088358	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6088359	6088445	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6088446	6088545	1	+	1	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6088446	6088545	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6088546	6088674	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6088675	6088746	1	+	0	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6088675	6088746	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6088747	6088842	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6088843	6088959	1	+	0	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6088843	6088959	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6088960	6089132	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6089133	6089491	0.97	+	0	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6089133	6089491	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6089492	6089930	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6089931	6090021	1	+	1	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6089931	6090021	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6090022	6090128	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6090129	6090367	1	+	0	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6090129	6090367	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	intron	6090368	6090451	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	CDS	6090452	6090470	1	+	1	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	exon	6090452	6090470	.	+	.	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
Ledus.S2	AUGUSTUS	stop_codon	6090471	6090473	.	+	0	transcript_id "Ledus.S2G079200.t1"; gene_id "Ledus.S2G079200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9521.t1 is derived from g10551.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7563766	7567672	.	-	.	Ledus.S3G099800
Ledus.S3	AUGUSTUS	transcript	7563766	7567628	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	stop_codon	7563763	7563765	.	-	0	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7563766	7564125	0.96	-	0	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7563766	7564125	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7564126	7564268	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7564269	7564417	1	-	2	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7564269	7564417	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7564418	7564499	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7564500	7564578	1	-	0	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7564500	7564578	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7564579	7564705	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7564706	7564804	1	-	0	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7564706	7564804	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7564805	7564934	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7564935	7565012	1	-	0	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7564935	7565012	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7565013	7565171	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7565172	7565232	1	-	1	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7565172	7565232	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7565233	7565309	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7565310	7565409	1	-	2	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7565310	7565409	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7565410	7565544	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7565545	7565686	1	-	0	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7565545	7565686	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7565687	7565867	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7565868	7566031	1	-	2	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7565868	7566031	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7566032	7566128	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7566129	7566208	1	-	1	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7566129	7566208	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7566209	7566371	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7566372	7566484	1	-	0	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7566372	7566484	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7566485	7566619	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7566620	7566760	1	-	0	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7566620	7566760	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7566761	7566905	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7566906	7567179	1	-	1	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7566906	7567179	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7567180	7567318	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7567319	7567366	1	-	1	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7567319	7567366	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7567367	7567448	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7567449	7567470	1	-	2	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7567449	7567470	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7567471	7567609	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7567610	7567628	0.84	-	0	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7567610	7567628	.	-	.	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	start_codon	7567626	7567628	.	-	0	transcript_id "Ledus.S3G099800.t1"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	transcript	7563766	7567672	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	stop_codon	7563763	7563765	.	-	0	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7563766	7564125	0.9	-	0	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7563766	7564125	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7564126	7564268	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7564269	7564417	1	-	2	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7564269	7564417	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7564418	7564499	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7564500	7564578	1	-	0	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7564500	7564578	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7564579	7564705	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7564706	7564804	1	-	0	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7564706	7564804	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7564805	7564934	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7564935	7565012	1	-	0	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7564935	7565012	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7565013	7565171	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7565172	7565232	1	-	1	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7565172	7565232	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7565233	7565309	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7565310	7565409	1	-	2	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7565310	7565409	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7565410	7565544	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7565545	7565686	1	-	0	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7565545	7565686	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7565687	7565867	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7565868	7566031	1	-	2	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7565868	7566031	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7566032	7566128	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7566129	7566208	1	-	1	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7566129	7566208	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7566209	7566371	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7566372	7566484	1	-	0	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7566372	7566484	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7566485	7566619	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7566620	7566760	1	-	0	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7566620	7566760	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7566761	7566905	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7566906	7567179	1	-	1	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7566906	7567179	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7567180	7567318	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7567319	7567366	0.79	-	1	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7567319	7567366	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	intron	7567367	7567490	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	CDS	7567491	7567672	0.72	-	0	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	exon	7567491	7567672	.	-	.	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
Ledus.S3	AUGUSTUS	start_codon	7567670	7567672	.	-	0	transcript_id "Ledus.S3G099800.t2"; gene_id "Ledus.S3G099800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8002.t1 is derived from g12673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8417601	8418788	.	-	.	Ledus.S5G078000
Ledus.S5	AUGUSTUS	transcript	8417601	8418788	.	-	.	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	stop_codon	8417598	8417600	.	-	0	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	CDS	8417601	8418100	0.51	-	2	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	exon	8417601	8418100	.	-	.	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	intron	8418101	8418197	.	-	.	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	CDS	8418198	8418259	0.75	-	1	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	exon	8418198	8418259	.	-	.	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	intron	8418260	8418452	.	-	.	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	CDS	8418453	8418509	0.84	-	1	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	exon	8418453	8418509	.	-	.	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	intron	8418510	8418771	.	-	.	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	CDS	8418772	8418788	0.74	-	0	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	exon	8418772	8418788	.	-	.	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
Ledus.S5	AUGUSTUS	start_codon	8418786	8418788	.	-	0	transcript_id "Ledus.S5G078000.t1"; gene_id "Ledus.S5G078000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10195.t1 is derived from g11225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13516283	13517154	.	+	.	Ledus.S3G167200
Ledus.S3	AUGUSTUS	transcript	13516283	13517154	.	+	.	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	start_codon	13516283	13516285	.	+	0	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	CDS	13516283	13516389	0.98	+	0	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	exon	13516283	13516389	.	+	.	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	intron	13516390	13516584	.	+	.	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	CDS	13516585	13516780	1	+	1	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	exon	13516585	13516780	.	+	.	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	intron	13516781	13516964	.	+	.	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	CDS	13516965	13516984	1	+	0	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	exon	13516965	13516984	.	+	.	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	intron	13516985	13517126	.	+	.	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	CDS	13517127	13517154	1	+	1	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	exon	13517127	13517154	.	+	.	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
Ledus.S3	AUGUSTUS	stop_codon	13517155	13517157	.	+	0	transcript_id "Ledus.S3G167200.t1"; gene_id "Ledus.S3G167200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2535.t1 is derived from g9398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18748916	18749500	.	+	.	Ledus.S2G241700
Ledus.S2	AUGUSTUS	transcript	18748916	18749500	.	+	.	transcript_id "Ledus.S2G241700.t1"; gene_id "Ledus.S2G241700"
Ledus.S2	AUGUSTUS	start_codon	18748916	18748918	.	+	0	transcript_id "Ledus.S2G241700.t1"; gene_id "Ledus.S2G241700"
Ledus.S2	AUGUSTUS	CDS	18748916	18749017	0.88	+	0	transcript_id "Ledus.S2G241700.t1"; gene_id "Ledus.S2G241700"
Ledus.S2	AUGUSTUS	exon	18748916	18749017	.	+	.	transcript_id "Ledus.S2G241700.t1"; gene_id "Ledus.S2G241700"
Ledus.S2	AUGUSTUS	intron	18749018	18749112	.	+	.	transcript_id "Ledus.S2G241700.t1"; gene_id "Ledus.S2G241700"
Ledus.S2	AUGUSTUS	CDS	18749113	18749193	1	+	0	transcript_id "Ledus.S2G241700.t1"; gene_id "Ledus.S2G241700"
Ledus.S2	AUGUSTUS	exon	18749113	18749193	.	+	.	transcript_id "Ledus.S2G241700.t1"; gene_id "Ledus.S2G241700"
Ledus.S2	AUGUSTUS	intron	18749194	18749275	.	+	.	transcript_id "Ledus.S2G241700.t1"; gene_id "Ledus.S2G241700"
Ledus.S2	AUGUSTUS	CDS	18749276	18749500	1	+	0	transcript_id "Ledus.S2G241700.t1"; gene_id "Ledus.S2G241700"
Ledus.S2	AUGUSTUS	exon	18749276	18749500	.	+	.	transcript_id "Ledus.S2G241700.t1"; gene_id "Ledus.S2G241700"
Ledus.S2	AUGUSTUS	stop_codon	18749501	18749503	.	+	0	transcript_id "Ledus.S2G241700.t1"; gene_id "Ledus.S2G241700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10436.t1 is derived from g11466.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15142391	15143364	.	+	.	Ledus.S3G191300
Ledus.S3	AUGUSTUS	transcript	15142391	15143364	.	+	.	transcript_id "Ledus.S3G191300.t1"; gene_id "Ledus.S3G191300"
Ledus.S3	AUGUSTUS	start_codon	15142391	15142393	.	+	0	transcript_id "Ledus.S3G191300.t1"; gene_id "Ledus.S3G191300"
Ledus.S3	AUGUSTUS	CDS	15142391	15142428	0.3	+	0	transcript_id "Ledus.S3G191300.t1"; gene_id "Ledus.S3G191300"
Ledus.S3	AUGUSTUS	exon	15142391	15142428	.	+	.	transcript_id "Ledus.S3G191300.t1"; gene_id "Ledus.S3G191300"
Ledus.S3	AUGUSTUS	intron	15142429	15142511	.	+	.	transcript_id "Ledus.S3G191300.t1"; gene_id "Ledus.S3G191300"
Ledus.S3	AUGUSTUS	CDS	15142512	15143364	0.25	+	1	transcript_id "Ledus.S3G191300.t1"; gene_id "Ledus.S3G191300"
Ledus.S3	AUGUSTUS	exon	15142512	15143364	.	+	.	transcript_id "Ledus.S3G191300.t1"; gene_id "Ledus.S3G191300"
Ledus.S3	AUGUSTUS	stop_codon	15143365	15143367	.	+	0	transcript_id "Ledus.S3G191300.t1"; gene_id "Ledus.S3G191300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1841.t1 is derived from g8704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12916483	12918828	.	+	.	Ledus.S2G172300
Ledus.S2	AUGUSTUS	transcript	12916483	12918828	.	+	.	transcript_id "Ledus.S2G172300.t1"; gene_id "Ledus.S2G172300"
Ledus.S2	AUGUSTUS	start_codon	12916483	12916485	.	+	0	transcript_id "Ledus.S2G172300.t1"; gene_id "Ledus.S2G172300"
Ledus.S2	AUGUSTUS	CDS	12916483	12918828	0.92	+	0	transcript_id "Ledus.S2G172300.t1"; gene_id "Ledus.S2G172300"
Ledus.S2	AUGUSTUS	exon	12916483	12918828	.	+	.	transcript_id "Ledus.S2G172300.t1"; gene_id "Ledus.S2G172300"
Ledus.S2	AUGUSTUS	stop_codon	12918829	12918831	.	+	0	transcript_id "Ledus.S2G172300.t1"; gene_id "Ledus.S2G172300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg920.t1 is derived from g7781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6175805	6177299	.	-	.	Ledus.S2G080200
Ledus.S2	AUGUSTUS	transcript	6175805	6177299	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	stop_codon	6175802	6175804	.	-	0	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	CDS	6175805	6175963	1	-	0	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	exon	6175805	6175963	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	intron	6175964	6176055	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	CDS	6176056	6176196	1	-	0	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	exon	6176056	6176196	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	intron	6176197	6176309	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	CDS	6176310	6176433	1	-	1	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	exon	6176310	6176433	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	intron	6176434	6176511	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	CDS	6176512	6176651	1	-	0	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	exon	6176512	6176651	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	intron	6176652	6176735	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	CDS	6176736	6176981	1	-	0	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	exon	6176736	6176981	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	intron	6176982	6177048	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	CDS	6177049	6177159	1	-	0	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	exon	6177049	6177159	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	intron	6177160	6177245	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	CDS	6177246	6177299	0.81	-	0	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	exon	6177246	6177299	.	-	.	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
Ledus.S2	AUGUSTUS	start_codon	6177297	6177299	.	-	0	transcript_id "Ledus.S2G080200.t1"; gene_id "Ledus.S2G080200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5238.t1 is derived from g2677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22631852	22634285	.	-	.	Ledus.S1G265900
Ledus.S1	AUGUSTUS	transcript	22631852	22634285	.	-	.	transcript_id "Ledus.S1G265900.t1"; gene_id "Ledus.S1G265900"
Ledus.S1	AUGUSTUS	stop_codon	22631849	22631851	.	-	0	transcript_id "Ledus.S1G265900.t1"; gene_id "Ledus.S1G265900"
Ledus.S1	AUGUSTUS	CDS	22631852	22632666	1	-	2	transcript_id "Ledus.S1G265900.t1"; gene_id "Ledus.S1G265900"
Ledus.S1	AUGUSTUS	exon	22631852	22632666	.	-	.	transcript_id "Ledus.S1G265900.t1"; gene_id "Ledus.S1G265900"
Ledus.S1	AUGUSTUS	intron	22632667	22632761	.	-	.	transcript_id "Ledus.S1G265900.t1"; gene_id "Ledus.S1G265900"
Ledus.S1	AUGUSTUS	CDS	22632762	22633387	1	-	1	transcript_id "Ledus.S1G265900.t1"; gene_id "Ledus.S1G265900"
Ledus.S1	AUGUSTUS	exon	22632762	22633387	.	-	.	transcript_id "Ledus.S1G265900.t1"; gene_id "Ledus.S1G265900"
Ledus.S1	AUGUSTUS	intron	22633388	22633497	.	-	.	transcript_id "Ledus.S1G265900.t1"; gene_id "Ledus.S1G265900"
Ledus.S1	AUGUSTUS	CDS	22633498	22634285	0.99	-	0	transcript_id "Ledus.S1G265900.t1"; gene_id "Ledus.S1G265900"
Ledus.S1	AUGUSTUS	exon	22633498	22634285	.	-	.	transcript_id "Ledus.S1G265900.t1"; gene_id "Ledus.S1G265900"
Ledus.S1	AUGUSTUS	start_codon	22634283	22634285	.	-	0	transcript_id "Ledus.S1G265900.t1"; gene_id "Ledus.S1G265900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg51.t1 is derived from g9464.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	124931	129395	.	-	.	Ledus.C8G001100
Ledus.C8	AUGUSTUS	transcript	124931	129395	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	stop_codon	124928	124930	.	-	0	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	124931	125023	1	-	0	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	124931	125023	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	125024	125097	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	125098	125268	1	-	0	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	125098	125268	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	125269	125364	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	125365	125604	1	-	0	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	125365	125604	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	125605	125673	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	125674	126108	0.71	-	0	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	125674	126108	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126109	126251	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	126252	126276	0.96	-	1	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	126252	126276	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126277	126456	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	126457	126471	1	-	1	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	126457	126471	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126472	126569	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	126570	126618	0.81	-	2	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	126570	126618	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126619	126691	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	126692	126731	0.82	-	0	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	126692	126731	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126732	126906	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	126907	126947	0.98	-	2	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	126907	126947	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126948	127116	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	127117	127297	1	-	0	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	127117	127297	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	127298	127501	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	127502	127559	1	-	1	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	127502	127559	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	127560	127892	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	127893	128507	1	-	1	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	127893	128507	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	128508	128720	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	128721	128887	1	-	0	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	128721	128887	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	128888	129146	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	129147	129395	1	-	0	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	129147	129395	.	-	.	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	start_codon	129393	129395	.	-	0	transcript_id "Ledus.C8G001100.t1"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	transcript	124931	129395	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	stop_codon	124928	124930	.	-	0	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	124931	125023	0.99	-	0	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	124931	125023	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	125024	125097	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	125098	125268	1	-	0	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	125098	125268	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	125269	125364	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	125365	125604	1	-	0	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	125365	125604	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	125605	125673	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	125674	126175	0.62	-	1	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	125674	126175	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126176	126251	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	126252	126276	0.68	-	2	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	126252	126276	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126277	126488	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	126489	126553	0.45	-	1	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	126489	126553	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126554	126691	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	126692	126731	1	-	2	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	126692	126731	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126732	127116	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	127117	127297	1	-	0	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	127117	127297	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	127298	127501	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	127502	127559	0.98	-	1	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	127502	127559	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	127560	127892	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	127893	128507	0.96	-	1	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	127893	128507	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	128508	128720	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	128721	128887	1	-	0	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	128721	128887	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	128888	129146	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	129147	129395	1	-	0	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	129147	129395	.	-	.	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	start_codon	129393	129395	.	-	0	transcript_id "Ledus.C8G001100.t2"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	transcript	124931	129395	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	stop_codon	124928	124930	.	-	0	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	124931	125023	1	-	0	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	124931	125023	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	125024	125097	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	125098	125268	1	-	0	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	125098	125268	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	125269	125364	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	125365	125604	1	-	0	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	125365	125604	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	125605	125673	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	125674	126175	0.62	-	1	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	125674	126175	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126176	126251	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	126252	126276	0.66	-	2	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	126252	126276	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126277	126488	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	126489	126553	0.72	-	1	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	126489	126553	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126554	126675	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	126676	126731	0.59	-	0	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	126676	126731	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126732	126906	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	126907	126947	0.74	-	2	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	126907	126947	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	126948	127116	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	127117	127297	1	-	0	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	127117	127297	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	127298	127501	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	127502	127559	1	-	1	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	127502	127559	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	127560	127892	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	127893	128507	1	-	1	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	127893	128507	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	128508	128720	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	128721	128887	1	-	0	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	128721	128887	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	intron	128888	129146	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	CDS	129147	129395	1	-	0	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	exon	129147	129395	.	-	.	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
Ledus.C8	AUGUSTUS	start_codon	129393	129395	.	-	0	transcript_id "Ledus.C8G001100.t3"; gene_id "Ledus.C8G001100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7954.t1 is derived from g12625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8102927	8104926	.	-	.	Ledus.S5G073200
Ledus.S5	AUGUSTUS	transcript	8102927	8104926	.	-	.	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	stop_codon	8102924	8102926	.	-	0	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	CDS	8102927	8102986	0.98	-	0	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	exon	8102927	8102986	.	-	.	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	intron	8102987	8103378	.	-	.	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	CDS	8103379	8103879	0.96	-	0	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	exon	8103379	8103879	.	-	.	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	intron	8103880	8104026	.	-	.	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	CDS	8104027	8104641	0.99	-	0	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	exon	8104027	8104641	.	-	.	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	intron	8104642	8104782	.	-	.	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	CDS	8104783	8104926	0.99	-	0	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	exon	8104783	8104926	.	-	.	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	start_codon	8104924	8104926	.	-	0	transcript_id "Ledus.S5G073200.t1"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	transcript	8102927	8104748	.	-	.	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	stop_codon	8102924	8102926	.	-	0	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	CDS	8102927	8102986	0.92	-	0	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	exon	8102927	8102986	.	-	.	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	intron	8102987	8103378	.	-	.	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	CDS	8103379	8103879	0.92	-	0	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	exon	8103379	8103879	.	-	.	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	intron	8103880	8104026	.	-	.	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	CDS	8104027	8104641	0.96	-	0	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	exon	8104027	8104641	.	-	.	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	intron	8104642	8104727	.	-	.	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	CDS	8104728	8104748	0.97	-	0	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	exon	8104728	8104748	.	-	.	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
Ledus.S5	AUGUSTUS	start_codon	8104746	8104748	.	-	0	transcript_id "Ledus.S5G073200.t2"; gene_id "Ledus.S5G073200"
# This transcript jg2365.t2 is derived from g9228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2366.t1 is derived from g9229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17595122	17595844	.	+	.	Ledus.S2G224800
Ledus.S2	AUGUSTUS	transcript	17595122	17595844	.	+	.	transcript_id "Ledus.S2G224800.t1"; gene_id "Ledus.S2G224800"
Ledus.S2	AUGUSTUS	start_codon	17595122	17595124	.	+	0	transcript_id "Ledus.S2G224800.t1"; gene_id "Ledus.S2G224800"
Ledus.S2	AUGUSTUS	CDS	17595122	17595185	0.31	+	0	transcript_id "Ledus.S2G224800.t1"; gene_id "Ledus.S2G224800"
Ledus.S2	AUGUSTUS	exon	17595122	17595185	.	+	.	transcript_id "Ledus.S2G224800.t1"; gene_id "Ledus.S2G224800"
Ledus.S2	AUGUSTUS	intron	17595186	17595267	.	+	.	transcript_id "Ledus.S2G224800.t1"; gene_id "Ledus.S2G224800"
Ledus.S2	AUGUSTUS	CDS	17595268	17595324	0.78	+	2	transcript_id "Ledus.S2G224800.t1"; gene_id "Ledus.S2G224800"
Ledus.S2	AUGUSTUS	exon	17595268	17595324	.	+	.	transcript_id "Ledus.S2G224800.t1"; gene_id "Ledus.S2G224800"
Ledus.S2	AUGUSTUS	intron	17595325	17595623	.	+	.	transcript_id "Ledus.S2G224800.t1"; gene_id "Ledus.S2G224800"
Ledus.S2	AUGUSTUS	CDS	17595624	17595844	0.78	+	2	transcript_id "Ledus.S2G224800.t1"; gene_id "Ledus.S2G224800"
Ledus.S2	AUGUSTUS	exon	17595624	17595844	.	+	.	transcript_id "Ledus.S2G224800.t1"; gene_id "Ledus.S2G224800"
Ledus.S2	AUGUSTUS	stop_codon	17595845	17595847	.	+	0	transcript_id "Ledus.S2G224800.t1"; gene_id "Ledus.S2G224800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2421.t1 is derived from g9284.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18041976	18045281	.	-	.	Ledus.S2G230300
Ledus.S2	AUGUSTUS	transcript	18041976	18045281	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	stop_codon	18041973	18041975	.	-	0	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18041976	18042071	0.98	-	0	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18041976	18042071	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18042072	18042156	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18042157	18042281	0.32	-	2	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18042157	18042281	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18042282	18042438	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18042439	18042504	1	-	2	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18042439	18042504	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18042505	18042607	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18042608	18042715	0.97	-	2	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18042608	18042715	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18042716	18042855	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18042856	18043015	0.97	-	0	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18042856	18043015	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18043016	18043229	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18043230	18043257	0.95	-	1	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18043230	18043257	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18043258	18043357	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18043358	18043436	0.94	-	2	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18043358	18043436	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18043437	18043533	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18043534	18043570	0.94	-	0	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18043534	18043570	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18043571	18043738	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18043739	18043821	1	-	2	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18043739	18043821	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18043822	18043960	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18043961	18044135	1	-	0	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18043961	18044135	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18044136	18044241	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18044242	18044293	0.99	-	1	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18044242	18044293	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18044294	18044404	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18044405	18044557	1	-	1	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18044405	18044557	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18044558	18044645	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18044646	18044833	1	-	0	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18044646	18044833	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18044834	18044907	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18044908	18045062	1	-	2	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18044908	18045062	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18045063	18045190	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18045191	18045281	0.82	-	0	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18045191	18045281	.	-	.	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	start_codon	18045279	18045281	.	-	0	transcript_id "Ledus.S2G230300.t1"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	transcript	18041976	18045281	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	stop_codon	18041973	18041975	.	-	0	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18041976	18042071	0.97	-	0	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18041976	18042071	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18042072	18042156	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18042157	18042281	0.32	-	2	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18042157	18042281	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18042282	18042438	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18042439	18042504	0.96	-	2	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18042439	18042504	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18042505	18042607	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18042608	18042715	0.95	-	2	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18042608	18042715	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18042716	18042855	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18042856	18043015	0.95	-	0	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18042856	18043015	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18043016	18043130	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18043131	18043211	0.88	-	0	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18043131	18043211	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18043212	18043357	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18043358	18043570	0.9	-	0	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18043358	18043570	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18043571	18043738	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18043739	18043821	1	-	2	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18043739	18043821	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18043822	18043960	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18043961	18044135	1	-	0	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18043961	18044135	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18044136	18044241	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18044242	18044293	0.98	-	1	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18044242	18044293	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18044294	18044404	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18044405	18044557	1	-	1	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18044405	18044557	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18044558	18044645	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18044646	18044833	1	-	0	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18044646	18044833	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18044834	18044907	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18044908	18045062	1	-	2	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18044908	18045062	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	intron	18045063	18045190	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	CDS	18045191	18045281	0.87	-	0	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	exon	18045191	18045281	.	-	.	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
Ledus.S2	AUGUSTUS	start_codon	18045279	18045281	.	-	0	transcript_id "Ledus.S2G230300.t2"; gene_id "Ledus.S2G230300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg354.t1 is derived from g7215.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1914423	1917513	.	+	.	Ledus.S2G023600
Ledus.S2	AUGUSTUS	transcript	1914423	1917513	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	start_codon	1914423	1914425	.	+	0	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	CDS	1914423	1914733	0.63	+	0	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	exon	1914423	1914733	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	intron	1914734	1914812	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	CDS	1914813	1914902	1	+	1	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	exon	1914813	1914902	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	intron	1914903	1915008	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	CDS	1915009	1915176	1	+	1	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	exon	1915009	1915176	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	intron	1915177	1915282	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	CDS	1915283	1915565	0.96	+	1	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	exon	1915283	1915565	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	intron	1915566	1915642	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	CDS	1915643	1915802	1	+	0	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	exon	1915643	1915802	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	intron	1915803	1915964	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	CDS	1915965	1916187	1	+	2	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	exon	1915965	1916187	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	intron	1916188	1916343	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	CDS	1916344	1916435	1	+	1	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	exon	1916344	1916435	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	intron	1916436	1916522	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	CDS	1916523	1916652	1	+	2	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	exon	1916523	1916652	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	intron	1916653	1916791	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	CDS	1916792	1917123	1	+	1	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	exon	1916792	1917123	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	intron	1917124	1917271	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	CDS	1917272	1917513	0.91	+	2	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	exon	1917272	1917513	.	+	.	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
Ledus.S2	AUGUSTUS	stop_codon	1917514	1917516	.	+	0	transcript_id "Ledus.S2G023600.t1"; gene_id "Ledus.S2G023600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4719.t1 is derived from g2157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19233581	19234496	.	+	.	Ledus.S1G214000
Ledus.S1	AUGUSTUS	transcript	19233581	19234496	.	+	.	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	start_codon	19233581	19233583	.	+	0	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	CDS	19233581	19233669	0.85	+	0	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	exon	19233581	19233669	.	+	.	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	intron	19233670	19233744	.	+	.	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	CDS	19233745	19233838	1	+	1	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	exon	19233745	19233838	.	+	.	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	intron	19233839	19233909	.	+	.	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	CDS	19233910	19234172	1	+	0	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	exon	19233910	19234172	.	+	.	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	intron	19234173	19234258	.	+	.	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	CDS	19234259	19234496	1	+	1	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	exon	19234259	19234496	.	+	.	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
Ledus.S1	AUGUSTUS	stop_codon	19234497	19234499	.	+	0	transcript_id "Ledus.S1G214000.t1"; gene_id "Ledus.S1G214000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12106.t1 is derived from g5725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9522729	9525670	.	+	.	Ledus.S4G126200
Ledus.S4	AUGUSTUS	transcript	9522729	9525670	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	start_codon	9522729	9522731	.	+	0	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	CDS	9522729	9522758	1	+	0	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	exon	9522729	9522758	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	intron	9522759	9522967	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	CDS	9522968	9523048	1	+	0	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	exon	9522968	9523048	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	intron	9523049	9523313	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	CDS	9523314	9523370	0.99	+	0	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	exon	9523314	9523370	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	intron	9523371	9523474	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	CDS	9523475	9523537	1	+	0	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	exon	9523475	9523537	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	intron	9523538	9523670	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	CDS	9523671	9523760	1	+	0	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	exon	9523671	9523760	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	intron	9523761	9523883	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	CDS	9523884	9524016	1	+	0	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	exon	9523884	9524016	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	intron	9524017	9524116	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	CDS	9524117	9524235	1	+	2	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	exon	9524117	9524235	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	intron	9524236	9524350	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	CDS	9524351	9524418	1	+	0	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	exon	9524351	9524418	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	intron	9524419	9524506	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	CDS	9524507	9524555	1	+	1	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	exon	9524507	9524555	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	intron	9524556	9524638	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	CDS	9524639	9525670	0.37	+	0	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	exon	9524639	9525670	.	+	.	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
Ledus.S4	AUGUSTUS	stop_codon	9525671	9525673	.	+	0	transcript_id "Ledus.S4G126200.t1"; gene_id "Ledus.S4G126200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5485.t1 is derived from g2924.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24492015	24492794	.	-	.	Ledus.S1G290600
Ledus.S1	AUGUSTUS	transcript	24492015	24492794	.	-	.	transcript_id "Ledus.S1G290600.t1"; gene_id "Ledus.S1G290600"
Ledus.S1	AUGUSTUS	stop_codon	24492012	24492014	.	-	0	transcript_id "Ledus.S1G290600.t1"; gene_id "Ledus.S1G290600"
Ledus.S1	AUGUSTUS	CDS	24492015	24492794	0.89	-	0	transcript_id "Ledus.S1G290600.t1"; gene_id "Ledus.S1G290600"
Ledus.S1	AUGUSTUS	exon	24492015	24492794	.	-	.	transcript_id "Ledus.S1G290600.t1"; gene_id "Ledus.S1G290600"
Ledus.S1	AUGUSTUS	start_codon	24492792	24492794	.	-	0	transcript_id "Ledus.S1G290600.t1"; gene_id "Ledus.S1G290600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12558.t1 is derived from g6180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12867727	12870268	.	-	.	Ledus.S4G171400
Ledus.S4	AUGUSTUS	transcript	12867727	12870268	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	stop_codon	12867724	12867726	.	-	0	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	CDS	12867727	12867871	0.5	-	1	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	exon	12867727	12867871	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	intron	12867872	12868114	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	CDS	12868115	12868256	0.82	-	2	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	exon	12868115	12868256	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	intron	12868257	12868338	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	CDS	12868339	12868447	0.59	-	0	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	exon	12868339	12868447	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	intron	12868448	12868545	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	CDS	12868546	12868647	0.5	-	0	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	exon	12868546	12868647	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	intron	12868648	12868725	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	CDS	12868726	12868761	0.61	-	0	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	exon	12868726	12868761	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	intron	12868762	12868871	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	CDS	12868872	12868965	0.72	-	1	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	exon	12868872	12868965	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	intron	12868966	12869115	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	CDS	12869116	12869201	0.71	-	0	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	exon	12869116	12869201	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	intron	12869202	12869465	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	CDS	12869466	12869552	0.94	-	0	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	exon	12869466	12869552	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	intron	12869553	12869682	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	CDS	12869683	12869760	0.89	-	0	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	exon	12869683	12869760	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	intron	12869761	12869840	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	CDS	12869841	12869951	1	-	0	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	exon	12869841	12869951	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	intron	12869952	12870049	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	CDS	12870050	12870268	0.39	-	0	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	exon	12870050	12870268	.	-	.	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
Ledus.S4	AUGUSTUS	start_codon	12870266	12870268	.	-	0	transcript_id "Ledus.S4G171400.t1"; gene_id "Ledus.S4G171400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2877.t1 is derived from g312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4348209	4350445	.	-	.	Ledus.S1G029800
Ledus.S1	AUGUSTUS	transcript	4348209	4350445	.	-	.	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	stop_codon	4348206	4348208	.	-	0	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	CDS	4348209	4348508	1	-	0	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	exon	4348209	4348508	.	-	.	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	intron	4348509	4348593	.	-	.	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	CDS	4348594	4348794	1	-	0	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	exon	4348594	4348794	.	-	.	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	intron	4348795	4348889	.	-	.	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	CDS	4348890	4349030	1	-	0	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	exon	4348890	4349030	.	-	.	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	intron	4349031	4349114	.	-	.	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	CDS	4349115	4349345	1	-	0	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	exon	4349115	4349345	.	-	.	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	intron	4349346	4349423	.	-	.	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	CDS	4349424	4350252	1	-	1	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	exon	4349424	4350252	.	-	.	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	intron	4350253	4350323	.	-	.	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	CDS	4350324	4350445	0.97	-	0	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	exon	4350324	4350445	.	-	.	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
Ledus.S1	AUGUSTUS	start_codon	4350443	4350445	.	-	0	transcript_id "Ledus.S1G029800.t1"; gene_id "Ledus.S1G029800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12573.t1 is derived from g6195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12928828	12931339	.	-	.	Ledus.S4G172900
Ledus.S4	AUGUSTUS	transcript	12928828	12931339	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	stop_codon	12928825	12928827	.	-	0	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	CDS	12928828	12928935	0.79	-	0	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	exon	12928828	12928935	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	intron	12928936	12929046	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	CDS	12929047	12929163	0.78	-	0	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	exon	12929047	12929163	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	intron	12929164	12929248	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	CDS	12929249	12929297	1	-	1	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	exon	12929249	12929297	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	intron	12929298	12929508	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	CDS	12929509	12929568	1	-	1	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	exon	12929509	12929568	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	intron	12929569	12929685	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	CDS	12929686	12929807	0.91	-	0	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	exon	12929686	12929807	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	intron	12929808	12929954	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	CDS	12929955	12929996	1	-	0	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	exon	12929955	12929996	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	intron	12929997	12930109	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	CDS	12930110	12930158	1	-	1	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	exon	12930110	12930158	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	intron	12930159	12930304	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	CDS	12930305	12930376	1	-	1	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	exon	12930305	12930376	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	intron	12930377	12930457	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	CDS	12930458	12930558	1	-	0	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	exon	12930458	12930558	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	intron	12930559	12930716	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	CDS	12930717	12930792	1	-	1	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	exon	12930717	12930792	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	intron	12930793	12931046	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	CDS	12931047	12931126	1	-	0	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	exon	12931047	12931126	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	intron	12931127	12931222	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	CDS	12931223	12931339	0.99	-	0	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	exon	12931223	12931339	.	-	.	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
Ledus.S4	AUGUSTUS	start_codon	12931337	12931339	.	-	0	transcript_id "Ledus.S4G172900.t1"; gene_id "Ledus.S4G172900"
# This transcript jg12759.t2 is derived from g6381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12760.t1 is derived from g6382.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14339378	14342222	.	+	.	Ledus.S4G191600
Ledus.S4	AUGUSTUS	transcript	14339378	14342222	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	start_codon	14339378	14339380	.	+	0	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	CDS	14339378	14339518	0.74	+	0	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	exon	14339378	14339518	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	intron	14339519	14339721	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	CDS	14339722	14340102	0.99	+	0	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	exon	14339722	14340102	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	intron	14340103	14340221	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	CDS	14340222	14340395	1	+	0	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	exon	14340222	14340395	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	intron	14340396	14340491	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	CDS	14340492	14340598	1	+	0	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	exon	14340492	14340598	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	intron	14340599	14340781	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	CDS	14340782	14341134	1	+	1	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	exon	14340782	14341134	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	intron	14341135	14341227	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	CDS	14341228	14341891	0.98	+	2	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	exon	14341228	14341891	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	intron	14341892	14342209	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	CDS	14342210	14342222	1	+	1	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	exon	14342210	14342222	.	+	.	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
Ledus.S4	AUGUSTUS	stop_codon	14342223	14342225	.	+	0	transcript_id "Ledus.S4G191600.t1"; gene_id "Ledus.S4G191600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1668.t1 is derived from g8529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11783580	11785033	.	-	.	Ledus.S2G155000
Ledus.S2	AUGUSTUS	transcript	11783580	11785033	.	-	.	transcript_id "Ledus.S2G155000.t1"; gene_id "Ledus.S2G155000"
Ledus.S2	AUGUSTUS	stop_codon	11783577	11783579	.	-	0	transcript_id "Ledus.S2G155000.t1"; gene_id "Ledus.S2G155000"
Ledus.S2	AUGUSTUS	CDS	11783580	11784944	0.84	-	0	transcript_id "Ledus.S2G155000.t1"; gene_id "Ledus.S2G155000"
Ledus.S2	AUGUSTUS	exon	11783580	11784944	.	-	.	transcript_id "Ledus.S2G155000.t1"; gene_id "Ledus.S2G155000"
Ledus.S2	AUGUSTUS	intron	11784945	11785024	.	-	.	transcript_id "Ledus.S2G155000.t1"; gene_id "Ledus.S2G155000"
Ledus.S2	AUGUSTUS	CDS	11785025	11785033	0.69	-	0	transcript_id "Ledus.S2G155000.t1"; gene_id "Ledus.S2G155000"
Ledus.S2	AUGUSTUS	exon	11785025	11785033	.	-	.	transcript_id "Ledus.S2G155000.t1"; gene_id "Ledus.S2G155000"
Ledus.S2	AUGUSTUS	start_codon	11785031	11785033	.	-	0	transcript_id "Ledus.S2G155000.t1"; gene_id "Ledus.S2G155000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2184.t1 is derived from g9047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15816073	15820661	.	-	.	Ledus.S2G206600
Ledus.S2	AUGUSTUS	transcript	15816073	15820661	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	stop_codon	15816070	15816072	.	-	0	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	CDS	15816073	15816336	0.65	-	0	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	exon	15816073	15816336	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	intron	15816337	15816458	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	CDS	15816459	15816608	0.91	-	0	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	exon	15816459	15816608	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	intron	15816609	15816715	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	CDS	15816716	15816863	0.85	-	1	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	exon	15816716	15816863	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	intron	15816864	15816948	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	CDS	15816949	15817025	1	-	0	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	exon	15816949	15817025	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	intron	15817026	15817261	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	CDS	15817262	15817422	1	-	2	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	exon	15817262	15817422	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	intron	15817423	15817554	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	CDS	15817555	15818313	1	-	2	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	exon	15817555	15818313	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	intron	15818314	15818451	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	CDS	15818452	15818574	1	-	2	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	exon	15818452	15818574	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	intron	15818575	15818728	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	CDS	15818729	15818818	1	-	2	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	exon	15818729	15818818	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	intron	15818819	15819043	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	CDS	15819044	15819255	1	-	1	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	exon	15819044	15819255	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	intron	15819256	15819562	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	CDS	15819563	15819660	1	-	0	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	exon	15819563	15819660	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	intron	15819661	15819747	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	CDS	15819748	15819884	1	-	2	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	exon	15819748	15819884	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	intron	15819885	15820477	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	CDS	15820478	15820661	0.86	-	0	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	exon	15820478	15820661	.	-	.	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
Ledus.S2	AUGUSTUS	start_codon	15820659	15820661	.	-	0	transcript_id "Ledus.S2G206600.t1"; gene_id "Ledus.S2G206600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13093.t1 is derived from g6903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5428009	5428737	.	+	.	Ledus.S6G015500
Ledus.S6	AUGUSTUS	transcript	5428009	5428737	.	+	.	transcript_id "Ledus.S6G015500.t1"; gene_id "Ledus.S6G015500"
Ledus.S6	AUGUSTUS	start_codon	5428009	5428011	.	+	0	transcript_id "Ledus.S6G015500.t1"; gene_id "Ledus.S6G015500"
Ledus.S6	AUGUSTUS	CDS	5428009	5428737	1	+	0	transcript_id "Ledus.S6G015500.t1"; gene_id "Ledus.S6G015500"
Ledus.S6	AUGUSTUS	exon	5428009	5428737	.	+	.	transcript_id "Ledus.S6G015500.t1"; gene_id "Ledus.S6G015500"
Ledus.S6	AUGUSTUS	stop_codon	5428738	5428740	.	+	0	transcript_id "Ledus.S6G015500.t1"; gene_id "Ledus.S6G015500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5874.t1 is derived from g3316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27505327	27505789	.	+	.	Ledus.S1G329500
Ledus.S1	AUGUSTUS	transcript	27505327	27505789	.	+	.	transcript_id "Ledus.S1G329500.t1"; gene_id "Ledus.S1G329500"
Ledus.S1	AUGUSTUS	start_codon	27505327	27505329	.	+	0	transcript_id "Ledus.S1G329500.t1"; gene_id "Ledus.S1G329500"
Ledus.S1	AUGUSTUS	CDS	27505327	27505494	0.59	+	0	transcript_id "Ledus.S1G329500.t1"; gene_id "Ledus.S1G329500"
Ledus.S1	AUGUSTUS	exon	27505327	27505494	.	+	.	transcript_id "Ledus.S1G329500.t1"; gene_id "Ledus.S1G329500"
Ledus.S1	AUGUSTUS	intron	27505495	27505711	.	+	.	transcript_id "Ledus.S1G329500.t1"; gene_id "Ledus.S1G329500"
Ledus.S1	AUGUSTUS	CDS	27505712	27505789	0.92	+	0	transcript_id "Ledus.S1G329500.t1"; gene_id "Ledus.S1G329500"
Ledus.S1	AUGUSTUS	exon	27505712	27505789	.	+	.	transcript_id "Ledus.S1G329500.t1"; gene_id "Ledus.S1G329500"
Ledus.S1	AUGUSTUS	stop_codon	27505790	27505792	.	+	0	transcript_id "Ledus.S1G329500.t1"; gene_id "Ledus.S1G329500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10047.t1 is derived from g11077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12179124	12180509	.	+	.	Ledus.S3G152400
Ledus.S3	AUGUSTUS	transcript	12179124	12180509	.	+	.	transcript_id "Ledus.S3G152400.t1"; gene_id "Ledus.S3G152400"
Ledus.S3	AUGUSTUS	start_codon	12179124	12179126	.	+	0	transcript_id "Ledus.S3G152400.t1"; gene_id "Ledus.S3G152400"
Ledus.S3	AUGUSTUS	CDS	12179124	12180509	0.97	+	0	transcript_id "Ledus.S3G152400.t1"; gene_id "Ledus.S3G152400"
Ledus.S3	AUGUSTUS	exon	12179124	12180509	.	+	.	transcript_id "Ledus.S3G152400.t1"; gene_id "Ledus.S3G152400"
Ledus.S3	AUGUSTUS	stop_codon	12180510	12180512	.	+	0	transcript_id "Ledus.S3G152400.t1"; gene_id "Ledus.S3G152400"
# This transcript jg2701.t4 is derived from g134.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2701.t5 is derived from g134.t5 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2703.t1 is derived from g136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2128460	2129588	.	+	.	Ledus.S1G012400
Ledus.S1	AUGUSTUS	transcript	2128460	2129588	.	+	.	transcript_id "Ledus.S1G012400.t1"; gene_id "Ledus.S1G012400"
Ledus.S1	AUGUSTUS	start_codon	2128460	2128462	.	+	0	transcript_id "Ledus.S1G012400.t1"; gene_id "Ledus.S1G012400"
Ledus.S1	AUGUSTUS	CDS	2128460	2128695	0.38	+	0	transcript_id "Ledus.S1G012400.t1"; gene_id "Ledus.S1G012400"
Ledus.S1	AUGUSTUS	exon	2128460	2128695	.	+	.	transcript_id "Ledus.S1G012400.t1"; gene_id "Ledus.S1G012400"
Ledus.S1	AUGUSTUS	intron	2128696	2128819	.	+	.	transcript_id "Ledus.S1G012400.t1"; gene_id "Ledus.S1G012400"
Ledus.S1	AUGUSTUS	CDS	2128820	2129588	0.62	+	1	transcript_id "Ledus.S1G012400.t1"; gene_id "Ledus.S1G012400"
Ledus.S1	AUGUSTUS	exon	2128820	2129588	.	+	.	transcript_id "Ledus.S1G012400.t1"; gene_id "Ledus.S1G012400"
Ledus.S1	AUGUSTUS	stop_codon	2129589	2129591	.	+	0	transcript_id "Ledus.S1G012400.t1"; gene_id "Ledus.S1G012400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4136.t1 is derived from g1572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14886850	14893045	.	+	.	Ledus.S1G155700
Ledus.S1	AUGUSTUS	transcript	14886850	14893045	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	start_codon	14886850	14886852	.	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14886850	14887097	0.97	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14886850	14887097	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14887098	14887186	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14887187	14887392	1	+	1	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14887187	14887392	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14887393	14887482	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14887483	14887601	1	+	2	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14887483	14887601	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14887602	14887792	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14887793	14887939	1	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14887793	14887939	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14887940	14888193	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14888194	14888748	0.94	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14888194	14888748	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14888749	14889098	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14889099	14889159	1	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14889099	14889159	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14889160	14889243	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14889244	14889329	1	+	2	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14889244	14889329	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14889330	14889443	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14889444	14889488	0.99	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14889444	14889488	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14889489	14889653	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14889654	14889857	1	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14889654	14889857	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14889858	14890002	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14890003	14890207	1	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14890003	14890207	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14890208	14890343	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14890344	14890501	1	+	2	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14890344	14890501	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14890502	14890708	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14890709	14890833	1	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14890709	14890833	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14890834	14890935	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14890936	14891049	1	+	1	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14890936	14891049	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14891050	14891161	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14891162	14891303	1	+	1	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14891162	14891303	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14891304	14891395	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14891396	14891605	1	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14891396	14891605	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14891606	14891712	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14891713	14891745	1	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14891713	14891745	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14891746	14891848	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14891849	14891968	0.98	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14891849	14891968	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14891969	14892083	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14892084	14892221	1	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14892084	14892221	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14892222	14892456	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14892457	14892576	1	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14892457	14892576	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14892577	14892701	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14892702	14892800	1	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14892702	14892800	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14892801	14892925	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14892926	14893045	0.46	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14892926	14893045	.	+	.	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	stop_codon	14893046	14893048	.	+	0	transcript_id "Ledus.S1G155700.t1"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	transcript	14886850	14893045	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	start_codon	14886850	14886852	.	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14886850	14887097	0.95	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14886850	14887097	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14887098	14887186	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14887187	14887392	1	+	1	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14887187	14887392	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14887393	14887482	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14887483	14887601	1	+	2	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14887483	14887601	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14887602	14887807	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14887808	14887939	1	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14887808	14887939	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14887940	14888193	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14888194	14888748	0.95	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14888194	14888748	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14888749	14889098	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14889099	14889159	1	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14889099	14889159	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14889160	14889243	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14889244	14889329	1	+	2	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14889244	14889329	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14889330	14889443	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14889444	14889488	0.99	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14889444	14889488	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14889489	14889653	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14889654	14889857	1	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14889654	14889857	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14889858	14890002	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14890003	14890207	1	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14890003	14890207	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14890208	14890343	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14890344	14890501	1	+	2	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14890344	14890501	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14890502	14890708	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14890709	14890833	0.99	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14890709	14890833	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14890834	14890935	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14890936	14891049	1	+	1	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14890936	14891049	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14891050	14891161	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14891162	14891303	1	+	1	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14891162	14891303	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14891304	14891395	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14891396	14891605	1	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14891396	14891605	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14891606	14891712	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14891713	14891745	1	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14891713	14891745	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14891746	14891848	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14891849	14891968	0.94	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14891849	14891968	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14891969	14892083	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14892084	14892221	1	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14892084	14892221	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14892222	14892456	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14892457	14892576	1	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14892457	14892576	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14892577	14892701	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14892702	14892800	0.99	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14892702	14892800	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	intron	14892801	14892925	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	CDS	14892926	14893045	0.36	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	exon	14892926	14893045	.	+	.	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
Ledus.S1	AUGUSTUS	stop_codon	14893046	14893048	.	+	0	transcript_id "Ledus.S1G155700.t2"; gene_id "Ledus.S1G155700"
# This transcript jg11490.t2 is derived from g5108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11491.t1 is derived from g5109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4899667	4900327	.	-	.	Ledus.S4G064700
Ledus.S4	AUGUSTUS	transcript	4899667	4900327	.	-	.	transcript_id "Ledus.S4G064700.t1"; gene_id "Ledus.S4G064700"
Ledus.S4	AUGUSTUS	stop_codon	4899664	4899666	.	-	0	transcript_id "Ledus.S4G064700.t1"; gene_id "Ledus.S4G064700"
Ledus.S4	AUGUSTUS	CDS	4899667	4900041	0.96	-	0	transcript_id "Ledus.S4G064700.t1"; gene_id "Ledus.S4G064700"
Ledus.S4	AUGUSTUS	exon	4899667	4900041	.	-	.	transcript_id "Ledus.S4G064700.t1"; gene_id "Ledus.S4G064700"
Ledus.S4	AUGUSTUS	intron	4900042	4900315	.	-	.	transcript_id "Ledus.S4G064700.t1"; gene_id "Ledus.S4G064700"
Ledus.S4	AUGUSTUS	CDS	4900316	4900327	1	-	0	transcript_id "Ledus.S4G064700.t1"; gene_id "Ledus.S4G064700"
Ledus.S4	AUGUSTUS	exon	4900316	4900327	.	-	.	transcript_id "Ledus.S4G064700.t1"; gene_id "Ledus.S4G064700"
Ledus.S4	AUGUSTUS	start_codon	4900325	4900327	.	-	0	transcript_id "Ledus.S4G064700.t1"; gene_id "Ledus.S4G064700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1335.t1 is derived from g8196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9309473	9310900	.	-	.	Ledus.S2G121700
Ledus.S2	AUGUSTUS	transcript	9309473	9310900	.	-	.	transcript_id "Ledus.S2G121700.t1"; gene_id "Ledus.S2G121700"
Ledus.S2	AUGUSTUS	stop_codon	9309470	9309472	.	-	0	transcript_id "Ledus.S2G121700.t1"; gene_id "Ledus.S2G121700"
Ledus.S2	AUGUSTUS	CDS	9309473	9310900	1	-	0	transcript_id "Ledus.S2G121700.t1"; gene_id "Ledus.S2G121700"
Ledus.S2	AUGUSTUS	exon	9309473	9310900	.	-	.	transcript_id "Ledus.S2G121700.t1"; gene_id "Ledus.S2G121700"
Ledus.S2	AUGUSTUS	start_codon	9310898	9310900	.	-	0	transcript_id "Ledus.S2G121700.t1"; gene_id "Ledus.S2G121700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg579.t1 is derived from g7440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3434567	3435256	.	+	.	Ledus.S2G046100
Ledus.S2	AUGUSTUS	transcript	3434567	3435256	.	+	.	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	start_codon	3434567	3434569	.	+	0	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	CDS	3434567	3434641	0.37	+	0	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	exon	3434567	3434641	.	+	.	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	intron	3434642	3434729	.	+	.	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	CDS	3434730	3434792	0.45	+	0	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	exon	3434730	3434792	.	+	.	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	intron	3434793	3434855	.	+	.	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	CDS	3434856	3434872	0.46	+	0	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	exon	3434856	3434872	.	+	.	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	intron	3434873	3435005	.	+	.	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	CDS	3435006	3435078	0.88	+	1	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	exon	3435006	3435078	.	+	.	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	intron	3435079	3435184	.	+	.	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	CDS	3435185	3435256	0.87	+	0	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	exon	3435185	3435256	.	+	.	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
Ledus.S2	AUGUSTUS	stop_codon	3435257	3435259	.	+	0	transcript_id "Ledus.S2G046100.t1"; gene_id "Ledus.S2G046100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6291.t1 is derived from g3734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30153347	30156872	.	-	.	Ledus.S1G371200
Ledus.S1	AUGUSTUS	transcript	30153347	30156872	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	stop_codon	30153344	30153346	.	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30153347	30153472	0.89	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30153347	30153472	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30153473	30153586	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30153587	30153621	0.9	-	2	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30153587	30153621	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30153622	30153724	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30153725	30153794	0.97	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30153725	30153794	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30153795	30154307	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30154308	30154384	1	-	2	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30154308	30154384	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30154385	30154566	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30154567	30154636	1	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30154567	30154636	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30154637	30154726	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30154727	30154819	1	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30154727	30154819	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30154820	30154992	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30154993	30155086	1	-	1	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30154993	30155086	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30155087	30155180	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30155181	30155242	1	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30155181	30155242	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30155243	30155402	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30155403	30155447	1	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30155403	30155447	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30155448	30155538	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30155539	30155601	1	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30155539	30155601	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30155602	30155796	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30155797	30155862	0.92	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30155797	30155862	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30155863	30155972	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30155973	30156089	0.64	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30155973	30156089	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30156090	30156206	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30156207	30156337	1	-	2	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30156207	30156337	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30156338	30156431	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30156432	30156579	0.94	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30156432	30156579	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30156580	30156687	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30156688	30156720	0.89	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30156688	30156720	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	intron	30156721	30156821	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	CDS	30156822	30156872	0.44	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	exon	30156822	30156872	.	-	.	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
Ledus.S1	AUGUSTUS	start_codon	30156870	30156872	.	-	0	transcript_id "Ledus.S1G371200.t1"; gene_id "Ledus.S1G371200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8803.t1 is derived from g9833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2046735	2047727	.	-	.	Ledus.S3G028000
Ledus.S3	AUGUSTUS	transcript	2046735	2047727	.	-	.	transcript_id "Ledus.S3G028000.t1"; gene_id "Ledus.S3G028000"
Ledus.S3	AUGUSTUS	stop_codon	2046732	2046734	.	-	0	transcript_id "Ledus.S3G028000.t1"; gene_id "Ledus.S3G028000"
Ledus.S3	AUGUSTUS	CDS	2046735	2047727	0.96	-	0	transcript_id "Ledus.S3G028000.t1"; gene_id "Ledus.S3G028000"
Ledus.S3	AUGUSTUS	exon	2046735	2047727	.	-	.	transcript_id "Ledus.S3G028000.t1"; gene_id "Ledus.S3G028000"
Ledus.S3	AUGUSTUS	start_codon	2047725	2047727	.	-	0	transcript_id "Ledus.S3G028000.t1"; gene_id "Ledus.S3G028000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9992.t1 is derived from g11022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11764057	11765514	.	+	.	Ledus.S3G146900
Ledus.S3	AUGUSTUS	transcript	11764057	11765514	.	+	.	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	start_codon	11764057	11764059	.	+	0	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	CDS	11764057	11764189	1	+	0	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	exon	11764057	11764189	.	+	.	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	intron	11764190	11764641	.	+	.	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	CDS	11764642	11764790	1	+	2	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	exon	11764642	11764790	.	+	.	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	intron	11764791	11764881	.	+	.	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	CDS	11764882	11764997	1	+	0	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	exon	11764882	11764997	.	+	.	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	intron	11764998	11765092	.	+	.	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	CDS	11765093	11765136	1	+	1	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	exon	11765093	11765136	.	+	.	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	intron	11765137	11765461	.	+	.	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	CDS	11765462	11765514	0.63	+	2	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	exon	11765462	11765514	.	+	.	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
Ledus.S3	AUGUSTUS	stop_codon	11765515	11765517	.	+	0	transcript_id "Ledus.S3G146900.t1"; gene_id "Ledus.S3G146900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7127.t1 is derived from g6658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1696631	1698373	.	-	.	Ledus.C7G018800
Ledus.C7	AUGUSTUS	transcript	1696631	1698373	.	-	.	transcript_id "Ledus.C7G018800.t1"; gene_id "Ledus.C7G018800"
Ledus.C7	AUGUSTUS	stop_codon	1696628	1696630	.	-	0	transcript_id "Ledus.C7G018800.t1"; gene_id "Ledus.C7G018800"
Ledus.C7	AUGUSTUS	CDS	1696631	1697455	1	-	0	transcript_id "Ledus.C7G018800.t1"; gene_id "Ledus.C7G018800"
Ledus.C7	AUGUSTUS	exon	1696631	1697455	.	-	.	transcript_id "Ledus.C7G018800.t1"; gene_id "Ledus.C7G018800"
Ledus.C7	AUGUSTUS	intron	1697456	1697558	.	-	.	transcript_id "Ledus.C7G018800.t1"; gene_id "Ledus.C7G018800"
Ledus.C7	AUGUSTUS	CDS	1697559	1697831	1	-	0	transcript_id "Ledus.C7G018800.t1"; gene_id "Ledus.C7G018800"
Ledus.C7	AUGUSTUS	exon	1697559	1697831	.	-	.	transcript_id "Ledus.C7G018800.t1"; gene_id "Ledus.C7G018800"
Ledus.C7	AUGUSTUS	intron	1697832	1697968	.	-	.	transcript_id "Ledus.C7G018800.t1"; gene_id "Ledus.C7G018800"
Ledus.C7	AUGUSTUS	CDS	1697969	1698373	0.84	-	0	transcript_id "Ledus.C7G018800.t1"; gene_id "Ledus.C7G018800"
Ledus.C7	AUGUSTUS	exon	1697969	1698373	.	-	.	transcript_id "Ledus.C7G018800.t1"; gene_id "Ledus.C7G018800"
Ledus.C7	AUGUSTUS	start_codon	1698371	1698373	.	-	0	transcript_id "Ledus.C7G018800.t1"; gene_id "Ledus.C7G018800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg351.t1 is derived from g7212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1858049	1858501	.	+	.	Ledus.S2G023300
Ledus.S2	AUGUSTUS	transcript	1858049	1858501	.	+	.	transcript_id "Ledus.S2G023300.t1"; gene_id "Ledus.S2G023300"
Ledus.S2	AUGUSTUS	start_codon	1858049	1858051	.	+	0	transcript_id "Ledus.S2G023300.t1"; gene_id "Ledus.S2G023300"
Ledus.S2	AUGUSTUS	CDS	1858049	1858293	0.36	+	0	transcript_id "Ledus.S2G023300.t1"; gene_id "Ledus.S2G023300"
Ledus.S2	AUGUSTUS	exon	1858049	1858293	.	+	.	transcript_id "Ledus.S2G023300.t1"; gene_id "Ledus.S2G023300"
Ledus.S2	AUGUSTUS	intron	1858294	1858398	.	+	.	transcript_id "Ledus.S2G023300.t1"; gene_id "Ledus.S2G023300"
Ledus.S2	AUGUSTUS	CDS	1858399	1858501	0.37	+	1	transcript_id "Ledus.S2G023300.t1"; gene_id "Ledus.S2G023300"
Ledus.S2	AUGUSTUS	exon	1858399	1858501	.	+	.	transcript_id "Ledus.S2G023300.t1"; gene_id "Ledus.S2G023300"
Ledus.S2	AUGUSTUS	stop_codon	1858502	1858504	.	+	0	transcript_id "Ledus.S2G023300.t1"; gene_id "Ledus.S2G023300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7666.t1 is derived from g12337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4973663	4976446	.	-	.	Ledus.S5G044400
Ledus.S5	AUGUSTUS	transcript	4973663	4976446	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	stop_codon	4973660	4973662	.	-	0	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4973663	4973813	0.99	-	1	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4973663	4973813	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4973814	4973940	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4973941	4974015	1	-	1	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4973941	4974015	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4974016	4974101	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4974102	4974221	1	-	1	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4974102	4974221	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4974222	4974325	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4974326	4974402	1	-	0	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4974326	4974402	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4974403	4974502	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4974503	4974584	1	-	1	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4974503	4974584	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4974585	4974688	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4974689	4974735	0.97	-	0	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4974689	4974735	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4974736	4974869	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4974870	4974993	1	-	1	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4974870	4974993	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4974994	4975085	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4975086	4975133	1	-	1	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4975086	4975133	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4975134	4975276	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4975277	4975368	1	-	0	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4975277	4975368	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4975369	4975451	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4975452	4975508	1	-	0	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4975452	4975508	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4975509	4975591	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4975592	4975662	1	-	2	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4975592	4975662	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4975663	4975755	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4975756	4975873	1	-	0	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4975756	4975873	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4975874	4975956	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4975957	4976056	0.99	-	1	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4975957	4976056	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	intron	4976057	4976132	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	CDS	4976133	4976446	0.93	-	0	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	exon	4976133	4976446	.	-	.	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
Ledus.S5	AUGUSTUS	start_codon	4976444	4976446	.	-	0	transcript_id "Ledus.S5G044400.t1"; gene_id "Ledus.S5G044400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4686.t1 is derived from g2124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19020520	19020723	.	-	.	Ledus.S1G210700
Ledus.S1	AUGUSTUS	transcript	19020520	19020723	.	-	.	transcript_id "Ledus.S1G210700.t1"; gene_id "Ledus.S1G210700"
Ledus.S1	AUGUSTUS	stop_codon	19020517	19020519	.	-	0	transcript_id "Ledus.S1G210700.t1"; gene_id "Ledus.S1G210700"
Ledus.S1	AUGUSTUS	CDS	19020520	19020723	0.67	-	0	transcript_id "Ledus.S1G210700.t1"; gene_id "Ledus.S1G210700"
Ledus.S1	AUGUSTUS	exon	19020520	19020723	.	-	.	transcript_id "Ledus.S1G210700.t1"; gene_id "Ledus.S1G210700"
Ledus.S1	AUGUSTUS	start_codon	19020721	19020723	.	-	0	transcript_id "Ledus.S1G210700.t1"; gene_id "Ledus.S1G210700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg742.t1 is derived from g7603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4705138	4707602	.	-	.	Ledus.S2G062400
Ledus.S2	AUGUSTUS	transcript	4705138	4707602	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	stop_codon	4705135	4705137	.	-	0	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	CDS	4705138	4705293	0.98	-	0	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	exon	4705138	4705293	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	intron	4705294	4705405	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	CDS	4705406	4705489	1	-	0	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	exon	4705406	4705489	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	intron	4705490	4705574	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	CDS	4705575	4705731	1	-	1	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	exon	4705575	4705731	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	intron	4705732	4705850	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	CDS	4705851	4706116	1	-	0	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	exon	4705851	4706116	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	intron	4706117	4706200	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	CDS	4706201	4706473	0.98	-	0	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	exon	4706201	4706473	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	intron	4706474	4706590	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	CDS	4706591	4706702	0.98	-	1	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	exon	4706591	4706702	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	intron	4706703	4706788	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	CDS	4706789	4707008	1	-	2	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	exon	4706789	4707008	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	intron	4707009	4707151	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	CDS	4707152	4707602	1	-	0	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	exon	4707152	4707602	.	-	.	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
Ledus.S2	AUGUSTUS	start_codon	4707600	4707602	.	-	0	transcript_id "Ledus.S2G062400.t1"; gene_id "Ledus.S2G062400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11109.t1 is derived from g4727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1901431	1903579	.	-	.	Ledus.S4G026500
Ledus.S4	AUGUSTUS	transcript	1901431	1903579	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	stop_codon	1901428	1901430	.	-	0	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	CDS	1901431	1901655	0.81	-	0	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	exon	1901431	1901655	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	intron	1901656	1901810	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	CDS	1901811	1902065	1	-	0	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	exon	1901811	1902065	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	intron	1902066	1902158	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	CDS	1902159	1902269	1	-	0	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	exon	1902159	1902269	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	intron	1902270	1902364	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	CDS	1902365	1902525	1	-	2	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	exon	1902365	1902525	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	intron	1902526	1902620	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	CDS	1902621	1902703	1	-	1	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	exon	1902621	1902703	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	intron	1902704	1902812	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	CDS	1902813	1902952	1	-	0	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	exon	1902813	1902952	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	intron	1902953	1903033	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	CDS	1903034	1903149	1	-	2	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	exon	1903034	1903149	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	intron	1903150	1903233	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	CDS	1903234	1903579	0.83	-	0	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	exon	1903234	1903579	.	-	.	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
Ledus.S4	AUGUSTUS	start_codon	1903577	1903579	.	-	0	transcript_id "Ledus.S4G026500.t1"; gene_id "Ledus.S4G026500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4105.t1 is derived from g1541.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14704375	14709552	.	+	.	Ledus.S1G152600
Ledus.S1	AUGUSTUS	transcript	14704375	14709552	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	start_codon	14704375	14704377	.	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14704375	14704498	1	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14704375	14704498	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14704499	14704725	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14704726	14704811	1	+	2	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14704726	14704811	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14704812	14704894	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14704895	14705002	1	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14704895	14705002	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14705003	14705141	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14705142	14705160	1	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14705142	14705160	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14705161	14705245	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14705246	14705467	0.8	+	2	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14705246	14705467	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14705468	14705583	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14705584	14705627	1	+	2	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14705584	14705627	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14705628	14705780	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14705781	14705848	1	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14705781	14705848	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14705849	14705924	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14705925	14706030	1	+	1	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14705925	14706030	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14706031	14706159	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14706160	14706320	1	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14706160	14706320	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14706321	14706405	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14706406	14706475	1	+	1	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14706406	14706475	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14706476	14706600	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14706601	14706651	1	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14706601	14706651	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14706652	14706754	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14706755	14706807	1	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14706755	14706807	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14706808	14706885	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14706886	14707015	1	+	1	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14706886	14707015	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14707016	14707187	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14707188	14707261	0.7	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14707188	14707261	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14707262	14707341	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14707342	14707371	1	+	1	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14707342	14707371	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14707372	14707501	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14707502	14707537	0.98	+	1	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14707502	14707537	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14707538	14707799	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14707800	14707963	1	+	1	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14707800	14707963	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14707964	14708030	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14708031	14708140	1	+	2	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14708031	14708140	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14708141	14708227	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14708228	14708352	1	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14708228	14708352	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14708353	14708446	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14708447	14708522	1	+	1	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14708447	14708522	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14708523	14708605	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14708606	14708756	1	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14708606	14708756	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14708757	14708837	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14708838	14709055	1	+	2	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14708838	14709055	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14709056	14709136	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14709137	14709231	1	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14709137	14709231	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14709232	14709317	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14709318	14709552	0.99	+	1	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14709318	14709552	.	+	.	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	stop_codon	14709553	14709555	.	+	0	transcript_id "Ledus.S1G152600.t1"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	transcript	14704375	14709552	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	start_codon	14704375	14704377	.	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14704375	14704498	1	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14704375	14704498	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14704499	14704725	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14704726	14704811	1	+	2	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14704726	14704811	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14704812	14704894	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14704895	14705002	1	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14704895	14705002	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14705003	14705141	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14705142	14705160	1	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14705142	14705160	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14705161	14705245	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14705246	14705467	0.71	+	2	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14705246	14705467	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14705468	14705583	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14705584	14705627	1	+	2	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14705584	14705627	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14705628	14705780	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14705781	14705848	1	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14705781	14705848	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14705849	14705924	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14705925	14706030	1	+	1	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14705925	14706030	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14706031	14706159	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14706160	14706320	1	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14706160	14706320	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14706321	14706405	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14706406	14706475	1	+	1	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14706406	14706475	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14706476	14706600	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14706601	14706651	1	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14706601	14706651	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14706652	14706754	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14706755	14706807	1	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14706755	14706807	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14706808	14706885	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14706886	14707015	1	+	1	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14706886	14707015	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14707016	14707187	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14707188	14707261	1	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14707188	14707261	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14707262	14707412	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14707413	14707469	0.73	+	1	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14707413	14707469	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14707470	14707799	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14707800	14707963	0.75	+	1	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14707800	14707963	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14707964	14708030	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14708031	14708140	1	+	2	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14708031	14708140	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14708141	14708227	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14708228	14708352	1	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14708228	14708352	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14708353	14708446	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14708447	14708522	1	+	1	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14708447	14708522	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14708523	14708605	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14708606	14708756	1	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14708606	14708756	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14708757	14708837	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14708838	14709055	0.99	+	2	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14708838	14709055	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14709056	14709136	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14709137	14709231	1	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14709137	14709231	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	intron	14709232	14709317	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	CDS	14709318	14709552	1	+	1	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	exon	14709318	14709552	.	+	.	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
Ledus.S1	AUGUSTUS	stop_codon	14709553	14709555	.	+	0	transcript_id "Ledus.S1G152600.t2"; gene_id "Ledus.S1G152600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg115.t1 is derived from g9528.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	512293	515429	.	-	.	Ledus.C8G007500
Ledus.C8	AUGUSTUS	transcript	512293	515429	.	-	.	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	stop_codon	512290	512292	.	-	0	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	CDS	512293	512474	0.92	-	2	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	exon	512293	512474	.	-	.	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	intron	512475	512568	.	-	.	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	CDS	512569	512641	0.9	-	0	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	exon	512569	512641	.	-	.	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	intron	512642	512829	.	-	.	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	CDS	512830	512877	0.88	-	0	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	exon	512830	512877	.	-	.	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	intron	512878	512948	.	-	.	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	CDS	512949	515429	0.57	-	0	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	exon	512949	515429	.	-	.	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	start_codon	515427	515429	.	-	0	transcript_id "Ledus.C8G007500.t1"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	transcript	512297	515429	.	-	.	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	stop_codon	512294	512296	.	-	0	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	CDS	512297	512469	0.93	-	2	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	exon	512297	512469	.	-	.	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	intron	512470	512568	.	-	.	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	CDS	512569	512641	0.86	-	0	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	exon	512569	512641	.	-	.	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	intron	512642	512829	.	-	.	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	CDS	512830	512877	0.84	-	0	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	exon	512830	512877	.	-	.	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	intron	512878	512948	.	-	.	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	CDS	512949	515429	0.49	-	0	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	exon	512949	515429	.	-	.	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
Ledus.C8	AUGUSTUS	start_codon	515427	515429	.	-	0	transcript_id "Ledus.C8G007500.t2"; gene_id "Ledus.C8G007500"
# This transcript jg4725.t2 is derived from g2163.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4726.t1 is derived from g2164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19267198	19267583	.	-	.	Ledus.S1G214700
Ledus.S1	AUGUSTUS	transcript	19267198	19267583	.	-	.	transcript_id "Ledus.S1G214700.t1"; gene_id "Ledus.S1G214700"
Ledus.S1	AUGUSTUS	stop_codon	19267195	19267197	.	-	0	transcript_id "Ledus.S1G214700.t1"; gene_id "Ledus.S1G214700"
Ledus.S1	AUGUSTUS	CDS	19267198	19267332	0.54	-	0	transcript_id "Ledus.S1G214700.t1"; gene_id "Ledus.S1G214700"
Ledus.S1	AUGUSTUS	exon	19267198	19267332	.	-	.	transcript_id "Ledus.S1G214700.t1"; gene_id "Ledus.S1G214700"
Ledus.S1	AUGUSTUS	intron	19267333	19267421	.	-	.	transcript_id "Ledus.S1G214700.t1"; gene_id "Ledus.S1G214700"
Ledus.S1	AUGUSTUS	CDS	19267422	19267583	0.96	-	0	transcript_id "Ledus.S1G214700.t1"; gene_id "Ledus.S1G214700"
Ledus.S1	AUGUSTUS	exon	19267422	19267583	.	-	.	transcript_id "Ledus.S1G214700.t1"; gene_id "Ledus.S1G214700"
Ledus.S1	AUGUSTUS	start_codon	19267581	19267583	.	-	0	transcript_id "Ledus.S1G214700.t1"; gene_id "Ledus.S1G214700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12541.t1 is derived from g6163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12806192	12806742	.	-	.	Ledus.S4G169700
Ledus.S4	AUGUSTUS	transcript	12806192	12806742	.	-	.	transcript_id "Ledus.S4G169700.t1"; gene_id "Ledus.S4G169700"
Ledus.S4	AUGUSTUS	stop_codon	12806189	12806191	.	-	0	transcript_id "Ledus.S4G169700.t1"; gene_id "Ledus.S4G169700"
Ledus.S4	AUGUSTUS	CDS	12806192	12806615	0.22	-	1	transcript_id "Ledus.S4G169700.t1"; gene_id "Ledus.S4G169700"
Ledus.S4	AUGUSTUS	exon	12806192	12806615	.	-	.	transcript_id "Ledus.S4G169700.t1"; gene_id "Ledus.S4G169700"
Ledus.S4	AUGUSTUS	intron	12806616	12806701	.	-	.	transcript_id "Ledus.S4G169700.t1"; gene_id "Ledus.S4G169700"
Ledus.S4	AUGUSTUS	CDS	12806702	12806742	0.27	-	0	transcript_id "Ledus.S4G169700.t1"; gene_id "Ledus.S4G169700"
Ledus.S4	AUGUSTUS	exon	12806702	12806742	.	-	.	transcript_id "Ledus.S4G169700.t1"; gene_id "Ledus.S4G169700"
Ledus.S4	AUGUSTUS	start_codon	12806740	12806742	.	-	0	transcript_id "Ledus.S4G169700.t1"; gene_id "Ledus.S4G169700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6203.t1 is derived from g3646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29607026	29607529	.	+	.	Ledus.S1G362400
Ledus.S1	AUGUSTUS	transcript	29607026	29607529	.	+	.	transcript_id "Ledus.S1G362400.t1"; gene_id "Ledus.S1G362400"
Ledus.S1	AUGUSTUS	start_codon	29607026	29607028	.	+	0	transcript_id "Ledus.S1G362400.t1"; gene_id "Ledus.S1G362400"
Ledus.S1	AUGUSTUS	CDS	29607026	29607368	0.6	+	0	transcript_id "Ledus.S1G362400.t1"; gene_id "Ledus.S1G362400"
Ledus.S1	AUGUSTUS	exon	29607026	29607368	.	+	.	transcript_id "Ledus.S1G362400.t1"; gene_id "Ledus.S1G362400"
Ledus.S1	AUGUSTUS	intron	29607369	29607434	.	+	.	transcript_id "Ledus.S1G362400.t1"; gene_id "Ledus.S1G362400"
Ledus.S1	AUGUSTUS	CDS	29607435	29607529	1	+	2	transcript_id "Ledus.S1G362400.t1"; gene_id "Ledus.S1G362400"
Ledus.S1	AUGUSTUS	exon	29607435	29607529	.	+	.	transcript_id "Ledus.S1G362400.t1"; gene_id "Ledus.S1G362400"
Ledus.S1	AUGUSTUS	stop_codon	29607530	29607532	.	+	0	transcript_id "Ledus.S1G362400.t1"; gene_id "Ledus.S1G362400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1301.t1 is derived from g8162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9180303	9181460	.	-	.	Ledus.S2G118300
Ledus.S2	AUGUSTUS	transcript	9180303	9181460	.	-	.	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	stop_codon	9180300	9180302	.	-	0	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	CDS	9180303	9180320	0.96	-	0	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	exon	9180303	9180320	.	-	.	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	intron	9180321	9180689	.	-	.	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	CDS	9180690	9180703	0.02	-	2	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	exon	9180690	9180703	.	-	.	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	intron	9180704	9181073	.	-	.	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	CDS	9181074	9181085	0.29	-	2	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	exon	9181074	9181085	.	-	.	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	intron	9181086	9181306	.	-	.	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	CDS	9181307	9181460	0.47	-	0	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	exon	9181307	9181460	.	-	.	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
Ledus.S2	AUGUSTUS	start_codon	9181458	9181460	.	-	0	transcript_id "Ledus.S2G118300.t1"; gene_id "Ledus.S2G118300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9686.t1 is derived from g10716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9002084	9008357	.	-	.	Ledus.S3G116300
Ledus.S3	AUGUSTUS	transcript	9002084	9008357	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	stop_codon	9002081	9002083	.	-	0	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9002084	9005038	1	-	0	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9002084	9005038	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9005039	9005134	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9005135	9005214	0.63	-	2	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9005135	9005214	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9005215	9005757	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9005758	9005877	0.46	-	2	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9005758	9005877	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9005878	9006067	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9006068	9006470	0.53	-	0	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9006068	9006470	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9006471	9006555	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9006556	9006699	1	-	0	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9006556	9006699	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9006700	9006829	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9006830	9006889	1	-	0	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9006830	9006889	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9006890	9006988	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9006989	9007054	1	-	0	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9006989	9007054	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9007055	9007192	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9007193	9007275	1	-	2	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9007193	9007275	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9007276	9007387	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9007388	9007466	1	-	0	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9007388	9007466	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9007467	9007538	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9007539	9007626	1	-	1	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9007539	9007626	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9007627	9007718	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9007719	9007819	1	-	0	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9007719	9007819	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9007820	9007903	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9007904	9007981	0.97	-	0	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9007904	9007981	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9007982	9008100	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9008101	9008144	0.77	-	2	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9008101	9008144	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	intron	9008145	9008257	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	CDS	9008258	9008357	0.78	-	0	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	exon	9008258	9008357	.	-	.	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
Ledus.S3	AUGUSTUS	start_codon	9008355	9008357	.	-	0	transcript_id "Ledus.S3G116300.t1"; gene_id "Ledus.S3G116300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10193.t1 is derived from g11223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13510585	13511787	.	+	.	Ledus.S3G167000
Ledus.S3	AUGUSTUS	transcript	13510585	13511787	.	+	.	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	start_codon	13510585	13510587	.	+	0	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	CDS	13510585	13510589	1	+	0	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	exon	13510585	13510589	.	+	.	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	intron	13510590	13510794	.	+	.	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	CDS	13510795	13510981	1	+	1	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	exon	13510795	13510981	.	+	.	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	intron	13510982	13511072	.	+	.	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	CDS	13511073	13511238	1	+	0	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	exon	13511073	13511238	.	+	.	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	intron	13511239	13511387	.	+	.	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	CDS	13511388	13511425	1	+	2	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	exon	13511388	13511425	.	+	.	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	intron	13511426	13511572	.	+	.	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	CDS	13511573	13511612	1	+	0	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	exon	13511573	13511612	.	+	.	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	intron	13511613	13511761	.	+	.	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	CDS	13511762	13511787	1	+	2	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	exon	13511762	13511787	.	+	.	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
Ledus.S3	AUGUSTUS	stop_codon	13511788	13511790	.	+	0	transcript_id "Ledus.S3G167000.t1"; gene_id "Ledus.S3G167000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg996.t1 is derived from g7857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6539572	6541417	.	+	.	Ledus.S2G087800
Ledus.S2	AUGUSTUS	transcript	6539572	6541417	.	+	.	transcript_id "Ledus.S2G087800.t1"; gene_id "Ledus.S2G087800"
Ledus.S2	AUGUSTUS	start_codon	6539572	6539574	.	+	0	transcript_id "Ledus.S2G087800.t1"; gene_id "Ledus.S2G087800"
Ledus.S2	AUGUSTUS	CDS	6539572	6540561	0.98	+	0	transcript_id "Ledus.S2G087800.t1"; gene_id "Ledus.S2G087800"
Ledus.S2	AUGUSTUS	exon	6539572	6540561	.	+	.	transcript_id "Ledus.S2G087800.t1"; gene_id "Ledus.S2G087800"
Ledus.S2	AUGUSTUS	intron	6540562	6540643	.	+	.	transcript_id "Ledus.S2G087800.t1"; gene_id "Ledus.S2G087800"
Ledus.S2	AUGUSTUS	CDS	6540644	6540948	0.95	+	0	transcript_id "Ledus.S2G087800.t1"; gene_id "Ledus.S2G087800"
Ledus.S2	AUGUSTUS	exon	6540644	6540948	.	+	.	transcript_id "Ledus.S2G087800.t1"; gene_id "Ledus.S2G087800"
Ledus.S2	AUGUSTUS	intron	6540949	6541029	.	+	.	transcript_id "Ledus.S2G087800.t1"; gene_id "Ledus.S2G087800"
Ledus.S2	AUGUSTUS	CDS	6541030	6541417	0.96	+	1	transcript_id "Ledus.S2G087800.t1"; gene_id "Ledus.S2G087800"
Ledus.S2	AUGUSTUS	exon	6541030	6541417	.	+	.	transcript_id "Ledus.S2G087800.t1"; gene_id "Ledus.S2G087800"
Ledus.S2	AUGUSTUS	stop_codon	6541418	6541420	.	+	0	transcript_id "Ledus.S2G087800.t1"; gene_id "Ledus.S2G087800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8023.t1 is derived from g12694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8573459	8574601	.	-	.	Ledus.S5G080100
Ledus.S5	AUGUSTUS	transcript	8573459	8574601	.	-	.	transcript_id "Ledus.S5G080100.t1"; gene_id "Ledus.S5G080100"
Ledus.S5	AUGUSTUS	stop_codon	8573456	8573458	.	-	0	transcript_id "Ledus.S5G080100.t1"; gene_id "Ledus.S5G080100"
Ledus.S5	AUGUSTUS	CDS	8573459	8574082	1	-	0	transcript_id "Ledus.S5G080100.t1"; gene_id "Ledus.S5G080100"
Ledus.S5	AUGUSTUS	exon	8573459	8574082	.	-	.	transcript_id "Ledus.S5G080100.t1"; gene_id "Ledus.S5G080100"
Ledus.S5	AUGUSTUS	intron	8574083	8574160	.	-	.	transcript_id "Ledus.S5G080100.t1"; gene_id "Ledus.S5G080100"
Ledus.S5	AUGUSTUS	CDS	8574161	8574601	0.97	-	0	transcript_id "Ledus.S5G080100.t1"; gene_id "Ledus.S5G080100"
Ledus.S5	AUGUSTUS	exon	8574161	8574601	.	-	.	transcript_id "Ledus.S5G080100.t1"; gene_id "Ledus.S5G080100"
Ledus.S5	AUGUSTUS	start_codon	8574599	8574601	.	-	0	transcript_id "Ledus.S5G080100.t1"; gene_id "Ledus.S5G080100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg30.t1 is derived from g9542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C12	AUGUSTUS	gene	13152	14261	.	+	.	Ledus.C12G000100
Ledus.C12	AUGUSTUS	transcript	13152	14261	.	+	.	transcript_id "Ledus.C12G000100.t1"; gene_id "Ledus.C12G000100"
Ledus.C12	AUGUSTUS	start_codon	13152	13154	.	+	0	transcript_id "Ledus.C12G000100.t1"; gene_id "Ledus.C12G000100"
Ledus.C12	AUGUSTUS	CDS	13152	14261	0.89	+	0	transcript_id "Ledus.C12G000100.t1"; gene_id "Ledus.C12G000100"
Ledus.C12	AUGUSTUS	exon	13152	14261	.	+	.	transcript_id "Ledus.C12G000100.t1"; gene_id "Ledus.C12G000100"
Ledus.C12	AUGUSTUS	stop_codon	14262	14264	.	+	0	transcript_id "Ledus.C12G000100.t1"; gene_id "Ledus.C12G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg1786.t1 is derived from g8649.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12584132	12586431	.	-	.	Ledus.S2G166800
Ledus.S2	AUGUSTUS	transcript	12584132	12586431	.	-	.	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	stop_codon	12584129	12584131	.	-	0	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12584132	12584395	1	-	0	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12584132	12584395	.	-	.	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12584396	12584515	.	-	.	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12584516	12584735	1	-	1	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12584516	12584735	.	-	.	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12584736	12585116	.	-	.	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12585117	12585171	0.92	-	2	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12585117	12585171	.	-	.	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12585172	12585266	.	-	.	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12585267	12585278	0.9	-	2	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12585267	12585278	.	-	.	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12585279	12585983	.	-	.	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12585984	12586137	1	-	0	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12585984	12586137	.	-	.	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12586138	12586401	.	-	.	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12586402	12586431	0.51	-	0	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12586402	12586431	.	-	.	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	start_codon	12586429	12586431	.	-	0	transcript_id "Ledus.S2G166800.t1"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	transcript	12584132	12586431	.	-	.	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	stop_codon	12584129	12584131	.	-	0	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12584132	12584395	1	-	0	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12584132	12584395	.	-	.	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12584396	12584515	.	-	.	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12584516	12584735	1	-	1	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12584516	12584735	.	-	.	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12584736	12584897	.	-	.	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12584898	12584932	0.7	-	0	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12584898	12584932	.	-	.	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12584933	12585270	.	-	.	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12585271	12585281	0.79	-	2	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12585271	12585281	.	-	.	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12585282	12585983	.	-	.	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12585984	12586137	1	-	0	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12585984	12586137	.	-	.	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12586138	12586401	.	-	.	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12586402	12586431	0.58	-	0	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12586402	12586431	.	-	.	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	start_codon	12586429	12586431	.	-	0	transcript_id "Ledus.S2G166800.t2"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	transcript	12584132	12586431	.	-	.	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	stop_codon	12584129	12584131	.	-	0	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12584132	12584395	1	-	0	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12584132	12584395	.	-	.	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12584396	12584515	.	-	.	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12584516	12584735	1	-	1	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12584516	12584735	.	-	.	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12584736	12584897	.	-	.	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12584898	12584932	0.5	-	0	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12584898	12584932	.	-	.	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12584933	12585270	.	-	.	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12585271	12585278	0.53	-	2	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12585271	12585278	.	-	.	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12585279	12585983	.	-	.	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12585984	12586137	1	-	0	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12585984	12586137	.	-	.	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	intron	12586138	12586401	.	-	.	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	CDS	12586402	12586431	0.63	-	0	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	exon	12586402	12586431	.	-	.	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
Ledus.S2	AUGUSTUS	start_codon	12586429	12586431	.	-	0	transcript_id "Ledus.S2G166800.t3"; gene_id "Ledus.S2G166800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3011.t1 is derived from g446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5314212	5319054	.	-	.	Ledus.S1G043200
Ledus.S1	AUGUSTUS	transcript	5314212	5319054	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	stop_codon	5314209	5314211	.	-	0	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5314212	5314243	1	-	2	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5314212	5314243	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5314244	5314408	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5314409	5314618	1	-	2	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5314409	5314618	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5314619	5314712	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5314713	5314766	0.95	-	2	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5314713	5314766	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5314767	5314868	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5314869	5314941	0.99	-	0	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5314869	5314941	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5314942	5315043	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5315044	5315108	0.9	-	2	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5315044	5315108	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5315109	5315210	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5315211	5315369	0.96	-	2	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5315211	5315369	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5315370	5315507	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5315508	5315613	0.88	-	0	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5315508	5315613	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5315614	5315891	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5315892	5316020	0.86	-	0	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5315892	5316020	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5316021	5316115	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5316116	5316244	1	-	0	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5316116	5316244	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5316245	5316339	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5316340	5316454	1	-	1	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5316340	5316454	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5316455	5316658	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5316659	5316678	1	-	0	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5316659	5316678	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5316679	5316758	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5316759	5316854	1	-	0	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5316759	5316854	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5316855	5316938	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5316939	5317041	1	-	1	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5316939	5317041	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5317042	5317124	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5317125	5317192	1	-	0	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5317125	5317192	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5317193	5317390	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5317391	5317536	0.94	-	2	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5317391	5317536	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5317537	5317644	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5317645	5317837	0.46	-	0	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5317645	5317837	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	intron	5317838	5318016	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	CDS	5318017	5319054	0.98	-	0	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	exon	5318017	5319054	.	-	.	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
Ledus.S1	AUGUSTUS	start_codon	5319052	5319054	.	-	0	transcript_id "Ledus.S1G043200.t1"; gene_id "Ledus.S1G043200"
# This transcript jg713.t2 is derived from g7574.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg714.t1 is derived from g7575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4423751	4425097	.	-	.	Ledus.S2G059600
Ledus.S2	AUGUSTUS	transcript	4423751	4425097	.	-	.	transcript_id "Ledus.S2G059600.t1"; gene_id "Ledus.S2G059600"
Ledus.S2	AUGUSTUS	stop_codon	4423748	4423750	.	-	0	transcript_id "Ledus.S2G059600.t1"; gene_id "Ledus.S2G059600"
Ledus.S2	AUGUSTUS	CDS	4423751	4424190	1	-	2	transcript_id "Ledus.S2G059600.t1"; gene_id "Ledus.S2G059600"
Ledus.S2	AUGUSTUS	exon	4423751	4424190	.	-	.	transcript_id "Ledus.S2G059600.t1"; gene_id "Ledus.S2G059600"
Ledus.S2	AUGUSTUS	intron	4424191	4424277	.	-	.	transcript_id "Ledus.S2G059600.t1"; gene_id "Ledus.S2G059600"
Ledus.S2	AUGUSTUS	CDS	4424278	4425097	1	-	0	transcript_id "Ledus.S2G059600.t1"; gene_id "Ledus.S2G059600"
Ledus.S2	AUGUSTUS	exon	4424278	4425097	.	-	.	transcript_id "Ledus.S2G059600.t1"; gene_id "Ledus.S2G059600"
Ledus.S2	AUGUSTUS	start_codon	4425095	4425097	.	-	0	transcript_id "Ledus.S2G059600.t1"; gene_id "Ledus.S2G059600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg208.t1 is derived from g7069.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	887023	888842	.	+	.	Ledus.S2G009000
Ledus.S2	AUGUSTUS	transcript	887023	888842	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	start_codon	887023	887025	.	+	0	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	887023	887169	0.3	+	0	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	887023	887169	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	887170	887545	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	887546	887635	1	+	0	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	887546	887635	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	887636	887732	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	887733	887831	1	+	0	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	887733	887831	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	887832	887925	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	887926	887986	0.99	+	0	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	887926	887986	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	887987	888092	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	888093	888148	1	+	2	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	888093	888148	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	888149	888232	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	888233	888278	1	+	0	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	888233	888278	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	888279	888364	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	888365	888468	1	+	2	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	888365	888468	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	888469	888553	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	888554	888617	1	+	0	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	888554	888617	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	888618	888696	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	888697	888842	1	+	2	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	888697	888842	.	+	.	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	stop_codon	888843	888845	.	+	0	transcript_id "Ledus.S2G009000.t1"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	transcript	887023	888842	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	start_codon	887023	887025	.	+	0	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	887023	887059	0.38	+	0	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	887023	887059	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	887060	887130	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	887131	887213	0.62	+	2	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	887131	887213	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	887214	887732	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	887733	887831	1	+	0	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	887733	887831	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	887832	887925	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	887926	887986	0.99	+	0	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	887926	887986	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	887987	888092	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	888093	888148	1	+	2	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	888093	888148	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	888149	888232	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	888233	888278	1	+	0	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	888233	888278	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	888279	888364	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	888365	888468	1	+	2	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	888365	888468	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	888469	888553	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	888554	888617	1	+	0	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	888554	888617	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	intron	888618	888696	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	CDS	888697	888842	1	+	2	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	exon	888697	888842	.	+	.	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
Ledus.S2	AUGUSTUS	stop_codon	888843	888845	.	+	0	transcript_id "Ledus.S2G009000.t2"; gene_id "Ledus.S2G009000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2513.t1 is derived from g9376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18532658	18533272	.	-	.	Ledus.S2G239500
Ledus.S2	AUGUSTUS	transcript	18532658	18533272	.	-	.	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	stop_codon	18532655	18532657	.	-	0	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	CDS	18532658	18532759	1	-	0	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	exon	18532658	18532759	.	-	.	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	intron	18532760	18532846	.	-	.	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	CDS	18532847	18533005	1	-	0	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	exon	18532847	18533005	.	-	.	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	intron	18533006	18533084	.	-	.	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	CDS	18533085	18533160	1	-	1	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	exon	18533085	18533160	.	-	.	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	intron	18533161	18533240	.	-	.	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	CDS	18533241	18533272	0.93	-	0	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	exon	18533241	18533272	.	-	.	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
Ledus.S2	AUGUSTUS	start_codon	18533270	18533272	.	-	0	transcript_id "Ledus.S2G239500.t1"; gene_id "Ledus.S2G239500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7669.t1 is derived from g12340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4987234	4988472	.	+	.	Ledus.S5G044700
Ledus.S5	AUGUSTUS	transcript	4987234	4988472	.	+	.	transcript_id "Ledus.S5G044700.t1"; gene_id "Ledus.S5G044700"
Ledus.S5	AUGUSTUS	start_codon	4987234	4987236	.	+	0	transcript_id "Ledus.S5G044700.t1"; gene_id "Ledus.S5G044700"
Ledus.S5	AUGUSTUS	CDS	4987234	4988472	0.93	+	0	transcript_id "Ledus.S5G044700.t1"; gene_id "Ledus.S5G044700"
Ledus.S5	AUGUSTUS	exon	4987234	4988472	.	+	.	transcript_id "Ledus.S5G044700.t1"; gene_id "Ledus.S5G044700"
Ledus.S5	AUGUSTUS	stop_codon	4988473	4988475	.	+	0	transcript_id "Ledus.S5G044700.t1"; gene_id "Ledus.S5G044700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4564.t1 is derived from g2001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17738076	17738522	.	+	.	Ledus.S1G198500
Ledus.S1	AUGUSTUS	transcript	17738076	17738522	.	+	.	transcript_id "Ledus.S1G198500.t1"; gene_id "Ledus.S1G198500"
Ledus.S1	AUGUSTUS	start_codon	17738076	17738078	.	+	0	transcript_id "Ledus.S1G198500.t1"; gene_id "Ledus.S1G198500"
Ledus.S1	AUGUSTUS	CDS	17738076	17738522	0.83	+	0	transcript_id "Ledus.S1G198500.t1"; gene_id "Ledus.S1G198500"
Ledus.S1	AUGUSTUS	exon	17738076	17738522	.	+	.	transcript_id "Ledus.S1G198500.t1"; gene_id "Ledus.S1G198500"
Ledus.S1	AUGUSTUS	stop_codon	17738523	17738525	.	+	0	transcript_id "Ledus.S1G198500.t1"; gene_id "Ledus.S1G198500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6820.t1 is derived from g4264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34446178	34448023	.	+	.	Ledus.S1G424100
Ledus.S1	AUGUSTUS	transcript	34446178	34448023	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	start_codon	34446178	34446180	.	+	0	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	CDS	34446178	34446207	1	+	0	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	exon	34446178	34446207	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	intron	34446208	34446451	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	CDS	34446452	34446624	0.99	+	0	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	exon	34446452	34446624	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	intron	34446625	34446765	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	CDS	34446766	34446851	0.93	+	1	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	exon	34446766	34446851	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	intron	34446852	34446966	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	CDS	34446967	34447416	0.69	+	2	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	exon	34446967	34447416	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	intron	34447417	34447514	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	CDS	34447515	34447542	1	+	2	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	exon	34447515	34447542	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	intron	34447543	34447709	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	CDS	34447710	34447793	1	+	1	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	exon	34447710	34447793	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	intron	34447794	34447974	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	CDS	34447975	34448023	1	+	1	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	exon	34447975	34448023	.	+	.	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
Ledus.S1	AUGUSTUS	stop_codon	34448024	34448026	.	+	0	transcript_id "Ledus.S1G424100.t1"; gene_id "Ledus.S1G424100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13092.t1 is derived from g6902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5424490	5425675	.	-	.	Ledus.S6G015400
Ledus.S6	AUGUSTUS	transcript	5424490	5425675	.	-	.	transcript_id "Ledus.S6G015400.t1"; gene_id "Ledus.S6G015400"
Ledus.S6	AUGUSTUS	stop_codon	5424487	5424489	.	-	0	transcript_id "Ledus.S6G015400.t1"; gene_id "Ledus.S6G015400"
Ledus.S6	AUGUSTUS	CDS	5424490	5425543	0.91	-	1	transcript_id "Ledus.S6G015400.t1"; gene_id "Ledus.S6G015400"
Ledus.S6	AUGUSTUS	exon	5424490	5425543	.	-	.	transcript_id "Ledus.S6G015400.t1"; gene_id "Ledus.S6G015400"
Ledus.S6	AUGUSTUS	intron	5425544	5425670	.	-	.	transcript_id "Ledus.S6G015400.t1"; gene_id "Ledus.S6G015400"
Ledus.S6	AUGUSTUS	CDS	5425671	5425675	0.96	-	0	transcript_id "Ledus.S6G015400.t1"; gene_id "Ledus.S6G015400"
Ledus.S6	AUGUSTUS	exon	5425671	5425675	.	-	.	transcript_id "Ledus.S6G015400.t1"; gene_id "Ledus.S6G015400"
Ledus.S6	AUGUSTUS	start_codon	5425673	5425675	.	-	0	transcript_id "Ledus.S6G015400.t1"; gene_id "Ledus.S6G015400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10206.t1 is derived from g11236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13571008	13572696	.	+	.	Ledus.S3G168300
Ledus.S3	AUGUSTUS	transcript	13571008	13572696	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	start_codon	13571008	13571010	.	+	0	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	CDS	13571008	13571191	0.44	+	0	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	exon	13571008	13571191	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	intron	13571192	13571307	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	CDS	13571308	13571511	1	+	2	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	exon	13571308	13571511	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	intron	13571512	13571611	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	CDS	13571612	13571736	1	+	2	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	exon	13571612	13571736	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	intron	13571737	13571834	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	CDS	13571835	13571954	1	+	0	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	exon	13571835	13571954	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	intron	13571955	13572045	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	CDS	13572046	13572135	1	+	0	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	exon	13572046	13572135	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	intron	13572136	13572216	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	CDS	13572217	13572303	1	+	0	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	exon	13572217	13572303	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	intron	13572304	13572438	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	CDS	13572439	13572696	0.56	+	0	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	exon	13572439	13572696	.	+	.	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
Ledus.S3	AUGUSTUS	stop_codon	13572697	13572699	.	+	0	transcript_id "Ledus.S3G168300.t1"; gene_id "Ledus.S3G168300"
# This transcript jg1447.t2 is derived from g8308.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1448.t1 is derived from g8309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10253114	10254307	.	-	.	Ledus.S2G133000
Ledus.S2	AUGUSTUS	transcript	10253114	10254307	.	-	.	transcript_id "Ledus.S2G133000.t1"; gene_id "Ledus.S2G133000"
Ledus.S2	AUGUSTUS	stop_codon	10253111	10253113	.	-	0	transcript_id "Ledus.S2G133000.t1"; gene_id "Ledus.S2G133000"
Ledus.S2	AUGUSTUS	CDS	10253114	10254307	0.99	-	0	transcript_id "Ledus.S2G133000.t1"; gene_id "Ledus.S2G133000"
Ledus.S2	AUGUSTUS	exon	10253114	10254307	.	-	.	transcript_id "Ledus.S2G133000.t1"; gene_id "Ledus.S2G133000"
Ledus.S2	AUGUSTUS	start_codon	10254305	10254307	.	-	0	transcript_id "Ledus.S2G133000.t1"; gene_id "Ledus.S2G133000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1943.t1 is derived from g8806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13623064	13624601	.	+	.	Ledus.S2G182500
Ledus.S2	AUGUSTUS	transcript	13623064	13624601	.	+	.	transcript_id "Ledus.S2G182500.t1"; gene_id "Ledus.S2G182500"
Ledus.S2	AUGUSTUS	start_codon	13623064	13623066	.	+	0	transcript_id "Ledus.S2G182500.t1"; gene_id "Ledus.S2G182500"
Ledus.S2	AUGUSTUS	CDS	13623064	13623783	0.72	+	0	transcript_id "Ledus.S2G182500.t1"; gene_id "Ledus.S2G182500"
Ledus.S2	AUGUSTUS	exon	13623064	13623783	.	+	.	transcript_id "Ledus.S2G182500.t1"; gene_id "Ledus.S2G182500"
Ledus.S2	AUGUSTUS	intron	13623784	13623869	.	+	.	transcript_id "Ledus.S2G182500.t1"; gene_id "Ledus.S2G182500"
Ledus.S2	AUGUSTUS	CDS	13623870	13624601	1	+	0	transcript_id "Ledus.S2G182500.t1"; gene_id "Ledus.S2G182500"
Ledus.S2	AUGUSTUS	exon	13623870	13624601	.	+	.	transcript_id "Ledus.S2G182500.t1"; gene_id "Ledus.S2G182500"
Ledus.S2	AUGUSTUS	stop_codon	13624602	13624604	.	+	0	transcript_id "Ledus.S2G182500.t1"; gene_id "Ledus.S2G182500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3013.t1 is derived from g448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5333472	5335700	.	+	.	Ledus.S1G043400
Ledus.S1	AUGUSTUS	transcript	5333472	5335700	.	+	.	transcript_id "Ledus.S1G043400.t1"; gene_id "Ledus.S1G043400"
Ledus.S1	AUGUSTUS	start_codon	5333472	5333474	.	+	0	transcript_id "Ledus.S1G043400.t1"; gene_id "Ledus.S1G043400"
Ledus.S1	AUGUSTUS	CDS	5333472	5335700	0.74	+	0	transcript_id "Ledus.S1G043400.t1"; gene_id "Ledus.S1G043400"
Ledus.S1	AUGUSTUS	exon	5333472	5335700	.	+	.	transcript_id "Ledus.S1G043400.t1"; gene_id "Ledus.S1G043400"
Ledus.S1	AUGUSTUS	stop_codon	5335701	5335703	.	+	0	transcript_id "Ledus.S1G043400.t1"; gene_id "Ledus.S1G043400"
# This transcript jg4229.t2 is derived from g1665.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4229.t3 is derived from g1665.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4230.t1 is derived from g1666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15668171	15672478	.	+	.	Ledus.S1G165100
Ledus.S1	AUGUSTUS	transcript	15668171	15672478	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	start_codon	15668171	15668173	.	+	0	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	CDS	15668171	15670533	0.95	+	0	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	exon	15668171	15670533	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	intron	15670534	15670759	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	CDS	15670760	15671165	1	+	1	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	exon	15670760	15671165	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	intron	15671166	15671282	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	CDS	15671283	15671463	1	+	0	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	exon	15671283	15671463	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	intron	15671464	15671681	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	CDS	15671682	15671834	1	+	2	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	exon	15671682	15671834	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	intron	15671835	15671995	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	CDS	15671996	15672121	1	+	2	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	exon	15671996	15672121	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	intron	15672122	15672233	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	CDS	15672234	15672286	1	+	2	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	exon	15672234	15672286	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	intron	15672287	15672373	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	CDS	15672374	15672478	1	+	0	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	exon	15672374	15672478	.	+	.	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
Ledus.S1	AUGUSTUS	stop_codon	15672479	15672481	.	+	0	transcript_id "Ledus.S1G165100.t1"; gene_id "Ledus.S1G165100"
# This transcript jg5654.t2 is derived from g3093.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5654.t3 is derived from g3093.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5655.t1 is derived from g3094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25599151	25606800	.	+	.	Ledus.S1G307600
Ledus.S1	AUGUSTUS	transcript	25599151	25606800	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	start_codon	25599151	25599153	.	+	0	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	CDS	25599151	25599378	0.71	+	0	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	exon	25599151	25599378	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	intron	25599379	25599471	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	CDS	25599472	25602942	0.98	+	0	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	exon	25599472	25602942	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	intron	25602943	25603051	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	CDS	25603052	25603163	0.55	+	0	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	exon	25603052	25603163	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	intron	25603164	25603361	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	CDS	25603362	25603396	0.62	+	2	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	exon	25603362	25603396	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	intron	25603397	25603501	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	CDS	25603502	25603650	0.33	+	0	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	exon	25603502	25603650	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	intron	25603651	25603757	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	CDS	25603758	25603832	0.12	+	1	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	exon	25603758	25603832	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	intron	25603833	25604107	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	CDS	25604108	25604172	0.53	+	1	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	exon	25604108	25604172	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	intron	25604173	25604356	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	CDS	25604357	25605291	1	+	2	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	exon	25604357	25605291	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	intron	25605292	25605387	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	CDS	25605388	25605846	1	+	0	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	exon	25605388	25605846	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	intron	25605847	25605934	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	CDS	25605935	25606495	0.98	+	0	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	exon	25605935	25606495	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	intron	25606496	25606605	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	CDS	25606606	25606800	0.59	+	0	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	exon	25606606	25606800	.	+	.	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
Ledus.S1	AUGUSTUS	stop_codon	25606801	25606803	.	+	0	transcript_id "Ledus.S1G307600.t1"; gene_id "Ledus.S1G307600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10834.t1 is derived from g3.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C22	AUGUSTUS	gene	3677	5302	.	-	.	Ledus.C22G000100
Ledus.C22	AUGUSTUS	transcript	3677	5302	.	-	.	transcript_id "Ledus.C22G000100.t1"; gene_id "Ledus.C22G000100"
Ledus.C22	AUGUSTUS	stop_codon	3674	3676	.	-	0	transcript_id "Ledus.C22G000100.t1"; gene_id "Ledus.C22G000100"
Ledus.C22	AUGUSTUS	CDS	3677	5302	0.28	-	0	transcript_id "Ledus.C22G000100.t1"; gene_id "Ledus.C22G000100"
Ledus.C22	AUGUSTUS	exon	3677	5302	.	-	.	transcript_id "Ledus.C22G000100.t1"; gene_id "Ledus.C22G000100"
Ledus.C22	AUGUSTUS	start_codon	5300	5302	.	-	0	transcript_id "Ledus.C22G000100.t1"; gene_id "Ledus.C22G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg423.t1 is derived from g7284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2382934	2389826	.	+	.	Ledus.S2G030500
Ledus.S2	AUGUSTUS	transcript	2382934	2389826	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	start_codon	2382934	2382936	.	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2382934	2383250	0.98	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2382934	2383250	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2383251	2383328	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2383329	2383449	1	+	1	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2383329	2383449	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2383450	2383534	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2383535	2383623	1	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2383535	2383623	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2383624	2383696	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2383697	2383781	0.95	+	1	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2383697	2383781	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2383782	2383859	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2383860	2384106	0.25	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2383860	2384106	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2384107	2384341	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2384342	2384476	0.41	+	2	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2384342	2384476	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2384477	2384662	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2384663	2384964	0.92	+	2	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2384663	2384964	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2384965	2385051	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2385052	2385333	0.84	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2385052	2385333	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2385334	2385531	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2385532	2385848	1	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2385532	2385848	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2385849	2385963	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2385964	2386124	0.81	+	1	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2385964	2386124	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2386125	2386270	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2386271	2386374	0.91	+	2	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2386271	2386374	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2386375	2386470	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2386471	2386627	0.77	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2386471	2386627	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2386628	2386736	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2386737	2386826	0.94	+	2	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2386737	2386826	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2386827	2387000	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2387001	2387158	0.86	+	2	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2387001	2387158	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2387159	2387251	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2387252	2387584	1	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2387252	2387584	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2387585	2387682	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2387683	2387973	1	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2387683	2387973	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2387974	2388077	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2388078	2388161	0.49	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2388078	2388161	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2388162	2388244	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2388245	2388378	0.63	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2388245	2388378	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2388379	2388862	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2388863	2389034	0.68	+	1	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2388863	2389034	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2389035	2389402	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2389403	2389477	0.48	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2389403	2389477	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	intron	2389478	2389562	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	CDS	2389563	2389826	0.97	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	exon	2389563	2389826	.	+	.	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
Ledus.S2	AUGUSTUS	stop_codon	2389827	2389829	.	+	0	transcript_id "Ledus.S2G030500.t1"; gene_id "Ledus.S2G030500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8638.t1 is derived from g9668.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	998193	1000043	.	+	.	Ledus.S3G011500
Ledus.S3	AUGUSTUS	transcript	998193	1000043	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	start_codon	998193	998195	.	+	0	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	998193	998238	1	+	0	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	998193	998238	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	998239	998332	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	998333	998417	1	+	2	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	998333	998417	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	998418	998513	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	998514	998589	1	+	1	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	998514	998589	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	998590	998709	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	998710	998870	1	+	0	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	998710	998870	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	998871	998950	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	998951	999227	1	+	1	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	998951	999227	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	999228	999372	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	999373	999492	1	+	0	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	999373	999492	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	999493	999584	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	999585	999680	1	+	0	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	999585	999680	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	999681	999764	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	999765	1000043	1	+	0	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	999765	1000043	.	+	.	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	stop_codon	1000044	1000046	.	+	0	transcript_id "Ledus.S3G011500.t1"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	transcript	998193	1000043	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	start_codon	998193	998195	.	+	0	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	998193	998238	1	+	0	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	998193	998238	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	998239	998332	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	998333	998417	1	+	2	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	998333	998417	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	998418	998513	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	998514	998589	1	+	1	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	998514	998589	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	998590	998709	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	998710	998870	1	+	0	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	998710	998870	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	998871	998950	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	998951	999227	1	+	1	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	998951	999227	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	999228	999375	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	999376	999492	1	+	0	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	999376	999492	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	999493	999584	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	999585	999680	1	+	0	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	999585	999680	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	intron	999681	999764	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	CDS	999765	1000043	1	+	0	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	exon	999765	1000043	.	+	.	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
Ledus.S3	AUGUSTUS	stop_codon	1000044	1000046	.	+	0	transcript_id "Ledus.S3G011500.t2"; gene_id "Ledus.S3G011500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10143.t1 is derived from g11173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13140115	13141084	.	+	.	Ledus.S3G162000
Ledus.S3	AUGUSTUS	transcript	13140115	13141084	.	+	.	transcript_id "Ledus.S3G162000.t1"; gene_id "Ledus.S3G162000"
Ledus.S3	AUGUSTUS	start_codon	13140115	13140117	.	+	0	transcript_id "Ledus.S3G162000.t1"; gene_id "Ledus.S3G162000"
Ledus.S3	AUGUSTUS	CDS	13140115	13140261	1	+	0	transcript_id "Ledus.S3G162000.t1"; gene_id "Ledus.S3G162000"
Ledus.S3	AUGUSTUS	exon	13140115	13140261	.	+	.	transcript_id "Ledus.S3G162000.t1"; gene_id "Ledus.S3G162000"
Ledus.S3	AUGUSTUS	intron	13140262	13140352	.	+	.	transcript_id "Ledus.S3G162000.t1"; gene_id "Ledus.S3G162000"
Ledus.S3	AUGUSTUS	CDS	13140353	13140574	1	+	0	transcript_id "Ledus.S3G162000.t1"; gene_id "Ledus.S3G162000"
Ledus.S3	AUGUSTUS	exon	13140353	13140574	.	+	.	transcript_id "Ledus.S3G162000.t1"; gene_id "Ledus.S3G162000"
Ledus.S3	AUGUSTUS	intron	13140575	13140757	.	+	.	transcript_id "Ledus.S3G162000.t1"; gene_id "Ledus.S3G162000"
Ledus.S3	AUGUSTUS	CDS	13140758	13141084	0.8	+	0	transcript_id "Ledus.S3G162000.t1"; gene_id "Ledus.S3G162000"
Ledus.S3	AUGUSTUS	exon	13140758	13141084	.	+	.	transcript_id "Ledus.S3G162000.t1"; gene_id "Ledus.S3G162000"
Ledus.S3	AUGUSTUS	stop_codon	13141085	13141087	.	+	0	transcript_id "Ledus.S3G162000.t1"; gene_id "Ledus.S3G162000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9159.t1 is derived from g10189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4943349	4944253	.	-	.	Ledus.S3G063600
Ledus.S3	AUGUSTUS	transcript	4943349	4944253	.	-	.	transcript_id "Ledus.S3G063600.t1"; gene_id "Ledus.S3G063600"
Ledus.S3	AUGUSTUS	stop_codon	4943346	4943348	.	-	0	transcript_id "Ledus.S3G063600.t1"; gene_id "Ledus.S3G063600"
Ledus.S3	AUGUSTUS	CDS	4943349	4943787	0.99	-	1	transcript_id "Ledus.S3G063600.t1"; gene_id "Ledus.S3G063600"
Ledus.S3	AUGUSTUS	exon	4943349	4943787	.	-	.	transcript_id "Ledus.S3G063600.t1"; gene_id "Ledus.S3G063600"
Ledus.S3	AUGUSTUS	intron	4943788	4943870	.	-	.	transcript_id "Ledus.S3G063600.t1"; gene_id "Ledus.S3G063600"
Ledus.S3	AUGUSTUS	CDS	4943871	4944253	1	-	0	transcript_id "Ledus.S3G063600.t1"; gene_id "Ledus.S3G063600"
Ledus.S3	AUGUSTUS	exon	4943871	4944253	.	-	.	transcript_id "Ledus.S3G063600.t1"; gene_id "Ledus.S3G063600"
Ledus.S3	AUGUSTUS	start_codon	4944251	4944253	.	-	0	transcript_id "Ledus.S3G063600.t1"; gene_id "Ledus.S3G063600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7051.t1 is derived from g6582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1052213	1052611	.	-	.	Ledus.C7G011200
Ledus.C7	AUGUSTUS	transcript	1052213	1052611	.	-	.	transcript_id "Ledus.C7G011200.t1"; gene_id "Ledus.C7G011200"
Ledus.C7	AUGUSTUS	stop_codon	1052210	1052212	.	-	0	transcript_id "Ledus.C7G011200.t1"; gene_id "Ledus.C7G011200"
Ledus.C7	AUGUSTUS	CDS	1052213	1052221	0.56	-	0	transcript_id "Ledus.C7G011200.t1"; gene_id "Ledus.C7G011200"
Ledus.C7	AUGUSTUS	exon	1052213	1052221	.	-	.	transcript_id "Ledus.C7G011200.t1"; gene_id "Ledus.C7G011200"
Ledus.C7	AUGUSTUS	intron	1052222	1052398	.	-	.	transcript_id "Ledus.C7G011200.t1"; gene_id "Ledus.C7G011200"
Ledus.C7	AUGUSTUS	CDS	1052399	1052611	0.45	-	0	transcript_id "Ledus.C7G011200.t1"; gene_id "Ledus.C7G011200"
Ledus.C7	AUGUSTUS	exon	1052399	1052611	.	-	.	transcript_id "Ledus.C7G011200.t1"; gene_id "Ledus.C7G011200"
Ledus.C7	AUGUSTUS	start_codon	1052609	1052611	.	-	0	transcript_id "Ledus.C7G011200.t1"; gene_id "Ledus.C7G011200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8942.t1 is derived from g9972.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3335619	3336785	.	+	.	Ledus.S3G041900
Ledus.S3	AUGUSTUS	transcript	3335619	3336785	.	+	.	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	start_codon	3335619	3335621	.	+	0	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	CDS	3335619	3335679	0.35	+	0	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	exon	3335619	3335679	.	+	.	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	intron	3335680	3336106	.	+	.	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	CDS	3336107	3336196	1	+	2	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	exon	3336107	3336196	.	+	.	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	intron	3336197	3336275	.	+	.	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	CDS	3336276	3336433	0.82	+	2	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	exon	3336276	3336433	.	+	.	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	intron	3336434	3336546	.	+	.	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	CDS	3336547	3336648	0.96	+	0	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	exon	3336547	3336648	.	+	.	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	intron	3336649	3336743	.	+	.	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	CDS	3336744	3336785	1	+	0	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	exon	3336744	3336785	.	+	.	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
Ledus.S3	AUGUSTUS	stop_codon	3336786	3336788	.	+	0	transcript_id "Ledus.S3G041900.t1"; gene_id "Ledus.S3G041900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10377.t1 is derived from g11407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14590978	14592437	.	+	.	Ledus.S3G185400
Ledus.S3	AUGUSTUS	transcript	14590978	14592437	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	start_codon	14590978	14590980	.	+	0	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	CDS	14590978	14591145	0.46	+	0	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	exon	14590978	14591145	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	intron	14591146	14591250	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	CDS	14591251	14591349	0.95	+	0	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	exon	14591251	14591349	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	intron	14591350	14591426	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	CDS	14591427	14591540	1	+	0	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	exon	14591427	14591540	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	intron	14591541	14591628	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	CDS	14591629	14591707	1	+	0	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	exon	14591629	14591707	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	intron	14591708	14591800	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	CDS	14591801	14591906	1	+	2	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	exon	14591801	14591906	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	intron	14591907	14591989	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	CDS	14591990	14592257	1	+	1	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	exon	14591990	14592257	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	intron	14592258	14592341	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	CDS	14592342	14592437	0.8	+	0	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	exon	14592342	14592437	.	+	.	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
Ledus.S3	AUGUSTUS	stop_codon	14592438	14592440	.	+	0	transcript_id "Ledus.S3G185400.t1"; gene_id "Ledus.S3G185400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8674.t1 is derived from g9704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1316151	1319766	.	+	.	Ledus.S3G015100
Ledus.S3	AUGUSTUS	transcript	1316151	1319766	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	start_codon	1316151	1316153	.	+	0	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1316151	1316208	1	+	0	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1316151	1316208	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1316209	1316290	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1316291	1316498	1	+	2	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1316291	1316498	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1316499	1316626	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1316627	1316763	1	+	1	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1316627	1316763	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1316764	1316897	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1316898	1316992	1	+	2	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1316898	1316992	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1316993	1317137	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1317138	1317251	1	+	0	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1317138	1317251	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1317252	1317348	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1317349	1317453	1	+	0	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1317349	1317453	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1317454	1317569	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1317570	1317641	0.79	+	0	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1317570	1317641	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1317642	1317746	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1317747	1317859	0.79	+	0	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1317747	1317859	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1317860	1317989	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1317990	1318097	1	+	1	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1317990	1318097	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1318098	1318220	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1318221	1318289	1	+	1	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1318221	1318289	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1318290	1318428	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1318429	1318537	1	+	1	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1318429	1318537	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1318538	1318719	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1318720	1318791	1	+	0	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1318720	1318791	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1318792	1318863	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1318864	1318964	1	+	0	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1318864	1318964	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1318965	1319074	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1319075	1319192	0.96	+	1	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1319075	1319192	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1319193	1319281	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1319282	1319341	1	+	0	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1319282	1319341	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	intron	1319342	1319433	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	CDS	1319434	1319766	0.6	+	0	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	exon	1319434	1319766	.	+	.	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
Ledus.S3	AUGUSTUS	stop_codon	1319767	1319769	.	+	0	transcript_id "Ledus.S3G015100.t1"; gene_id "Ledus.S3G015100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1485.t1 is derived from g8346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10532147	10535589	.	+	.	Ledus.S2G136700
Ledus.S2	AUGUSTUS	transcript	10532147	10535589	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	start_codon	10532147	10532149	.	+	0	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10532147	10532277	0.97	+	0	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10532147	10532277	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10532278	10532560	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10532561	10532607	0.98	+	1	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10532561	10532607	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10532608	10532772	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10532773	10532840	1	+	2	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10532773	10532840	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10532841	10532928	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10532929	10533132	1	+	0	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10532929	10533132	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10533133	10533293	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10533294	10533374	1	+	0	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10533294	10533374	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10533375	10533494	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10533495	10533581	1	+	0	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10533495	10533581	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10533582	10533671	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10533672	10533767	1	+	0	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10533672	10533767	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10533768	10533888	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10533889	10533942	1	+	0	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10533889	10533942	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10533943	10534080	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10534081	10535090	1	+	0	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10534081	10535090	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10535091	10535174	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10535175	10535223	1	+	1	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10535175	10535223	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10535224	10535325	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10535326	10535365	1	+	0	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10535326	10535365	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10535366	10535455	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10535456	10535589	1	+	2	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10535456	10535589	.	+	.	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	stop_codon	10535590	10535592	.	+	0	transcript_id "Ledus.S2G136700.t1"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	transcript	10532147	10535589	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	start_codon	10532147	10532149	.	+	0	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10532147	10532277	0.96	+	0	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10532147	10532277	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10532278	10532566	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10532567	10532607	0.99	+	1	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10532567	10532607	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10532608	10532772	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10532773	10532840	0.99	+	2	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10532773	10532840	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10532841	10532928	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10532929	10533132	1	+	0	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10532929	10533132	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10533133	10533293	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10533294	10533374	0.99	+	0	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10533294	10533374	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10533375	10533494	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10533495	10533581	1	+	0	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10533495	10533581	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10533582	10533671	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10533672	10533767	1	+	0	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10533672	10533767	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10533768	10533888	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10533889	10533942	1	+	0	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10533889	10533942	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10533943	10534080	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10534081	10535090	1	+	0	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10534081	10535090	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10535091	10535174	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10535175	10535223	1	+	1	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10535175	10535223	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10535224	10535325	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10535326	10535365	1	+	0	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10535326	10535365	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	intron	10535366	10535455	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	CDS	10535456	10535589	1	+	2	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	exon	10535456	10535589	.	+	.	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
Ledus.S2	AUGUSTUS	stop_codon	10535590	10535592	.	+	0	transcript_id "Ledus.S2G136700.t2"; gene_id "Ledus.S2G136700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5466.t1 is derived from g2905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24443604	24446610	.	+	.	Ledus.S1G288700
Ledus.S1	AUGUSTUS	transcript	24443604	24446610	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	start_codon	24443604	24443606	.	+	0	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24443604	24443989	0.8	+	0	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24443604	24443989	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	intron	24443990	24444150	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24444151	24444376	1	+	1	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24444151	24444376	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	intron	24444377	24444527	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24444528	24444583	1	+	0	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24444528	24444583	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	intron	24444584	24444677	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24444678	24444780	0.98	+	1	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24444678	24444780	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	intron	24444781	24444882	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24444883	24444948	0.98	+	0	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24444883	24444948	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	intron	24444949	24445091	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24445092	24445205	0.99	+	0	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24445092	24445205	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	intron	24445206	24445316	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24445317	24445443	1	+	0	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24445317	24445443	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	intron	24445444	24445537	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24445538	24445638	1	+	2	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24445538	24445638	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	intron	24445639	24445766	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24445767	24445892	1	+	0	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24445767	24445892	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	intron	24445893	24445969	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24445970	24446034	1	+	0	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24445970	24446034	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	intron	24446035	24446150	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24446151	24446232	0.99	+	1	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24446151	24446232	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	intron	24446233	24446360	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24446361	24446443	0.95	+	0	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24446361	24446443	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	intron	24446444	24446546	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	CDS	24446547	24446610	0.91	+	1	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	exon	24446547	24446610	.	+	.	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
Ledus.S1	AUGUSTUS	stop_codon	24446611	24446613	.	+	0	transcript_id "Ledus.S1G288700.t1"; gene_id "Ledus.S1G288700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4853.t1 is derived from g2291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20222979	20225806	.	-	.	Ledus.S1G227400
Ledus.S1	AUGUSTUS	transcript	20222979	20225806	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	stop_codon	20222976	20222978	.	-	0	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	CDS	20222979	20223142	0.99	-	2	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	exon	20222979	20223142	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	intron	20223143	20223224	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	CDS	20223225	20223922	1	-	1	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	exon	20223225	20223922	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	intron	20223923	20224006	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	CDS	20224007	20224292	1	-	2	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	exon	20224007	20224292	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	intron	20224293	20224358	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	CDS	20224359	20224686	1	-	0	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	exon	20224359	20224686	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	intron	20224687	20224761	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	CDS	20224762	20224999	1	-	1	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	exon	20224762	20224999	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	intron	20225000	20225083	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	CDS	20225084	20225293	1	-	1	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	exon	20225084	20225293	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	intron	20225294	20225387	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	CDS	20225388	20225475	1	-	2	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	exon	20225388	20225475	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	intron	20225476	20225628	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	CDS	20225629	20225806	0.99	-	0	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	exon	20225629	20225806	.	-	.	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
Ledus.S1	AUGUSTUS	start_codon	20225804	20225806	.	-	0	transcript_id "Ledus.S1G227400.t1"; gene_id "Ledus.S1G227400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5229.t1 is derived from g2668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22601658	22608895	.	+	.	Ledus.S1G265000
Ledus.S1	AUGUSTUS	transcript	22601658	22608895	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	start_codon	22601658	22601660	.	+	0	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	CDS	22601658	22601741	0.72	+	0	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	exon	22601658	22601741	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	intron	22601742	22601830	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	CDS	22601831	22601916	1	+	0	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	exon	22601831	22601916	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	intron	22601917	22602016	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	CDS	22602017	22605158	1	+	1	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	exon	22602017	22605158	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	intron	22605159	22605251	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	CDS	22605252	22607793	1	+	0	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	exon	22605252	22607793	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	intron	22607794	22607926	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	CDS	22607927	22608381	1	+	2	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	exon	22607927	22608381	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	intron	22608382	22608482	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	CDS	22608483	22608599	1	+	0	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	exon	22608483	22608599	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	intron	22608600	22608754	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	CDS	22608755	22608895	0.99	+	0	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	exon	22608755	22608895	.	+	.	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
Ledus.S1	AUGUSTUS	stop_codon	22608896	22608898	.	+	0	transcript_id "Ledus.S1G265000.t1"; gene_id "Ledus.S1G265000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2665.t1 is derived from g98.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1468542	1469083	.	-	.	Ledus.S1G008600
Ledus.S1	AUGUSTUS	transcript	1468542	1469083	.	-	.	transcript_id "Ledus.S1G008600.t1"; gene_id "Ledus.S1G008600"
Ledus.S1	AUGUSTUS	stop_codon	1468539	1468541	.	-	0	transcript_id "Ledus.S1G008600.t1"; gene_id "Ledus.S1G008600"
Ledus.S1	AUGUSTUS	CDS	1468542	1468862	0.75	-	0	transcript_id "Ledus.S1G008600.t1"; gene_id "Ledus.S1G008600"
Ledus.S1	AUGUSTUS	exon	1468542	1468862	.	-	.	transcript_id "Ledus.S1G008600.t1"; gene_id "Ledus.S1G008600"
Ledus.S1	AUGUSTUS	intron	1468863	1468996	.	-	.	transcript_id "Ledus.S1G008600.t1"; gene_id "Ledus.S1G008600"
Ledus.S1	AUGUSTUS	CDS	1468997	1469083	0.56	-	0	transcript_id "Ledus.S1G008600.t1"; gene_id "Ledus.S1G008600"
Ledus.S1	AUGUSTUS	exon	1468997	1469083	.	-	.	transcript_id "Ledus.S1G008600.t1"; gene_id "Ledus.S1G008600"
Ledus.S1	AUGUSTUS	start_codon	1469081	1469083	.	-	0	transcript_id "Ledus.S1G008600.t1"; gene_id "Ledus.S1G008600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5723.t1 is derived from g3162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26227358	26227883	.	+	.	Ledus.S1G314400
Ledus.S1	AUGUSTUS	transcript	26227358	26227883	.	+	.	transcript_id "Ledus.S1G314400.t1"; gene_id "Ledus.S1G314400"
Ledus.S1	AUGUSTUS	start_codon	26227358	26227360	.	+	0	transcript_id "Ledus.S1G314400.t1"; gene_id "Ledus.S1G314400"
Ledus.S1	AUGUSTUS	CDS	26227358	26227522	0.52	+	0	transcript_id "Ledus.S1G314400.t1"; gene_id "Ledus.S1G314400"
Ledus.S1	AUGUSTUS	exon	26227358	26227522	.	+	.	transcript_id "Ledus.S1G314400.t1"; gene_id "Ledus.S1G314400"
Ledus.S1	AUGUSTUS	intron	26227523	26227620	.	+	.	transcript_id "Ledus.S1G314400.t1"; gene_id "Ledus.S1G314400"
Ledus.S1	AUGUSTUS	CDS	26227621	26227720	0.31	+	0	transcript_id "Ledus.S1G314400.t1"; gene_id "Ledus.S1G314400"
Ledus.S1	AUGUSTUS	exon	26227621	26227720	.	+	.	transcript_id "Ledus.S1G314400.t1"; gene_id "Ledus.S1G314400"
Ledus.S1	AUGUSTUS	intron	26227721	26227794	.	+	.	transcript_id "Ledus.S1G314400.t1"; gene_id "Ledus.S1G314400"
Ledus.S1	AUGUSTUS	CDS	26227795	26227883	0.25	+	2	transcript_id "Ledus.S1G314400.t1"; gene_id "Ledus.S1G314400"
Ledus.S1	AUGUSTUS	exon	26227795	26227883	.	+	.	transcript_id "Ledus.S1G314400.t1"; gene_id "Ledus.S1G314400"
Ledus.S1	AUGUSTUS	stop_codon	26227884	26227886	.	+	0	transcript_id "Ledus.S1G314400.t1"; gene_id "Ledus.S1G314400"
# This transcript jg3440.t2 is derived from g875.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3440.t3 is derived from g875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3440.t4 is derived from g875.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3441.t1 is derived from g876.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8386142	8386707	.	+	.	Ledus.S1G086200
Ledus.S1	AUGUSTUS	transcript	8386142	8386679	.	+	.	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	start_codon	8386142	8386144	.	+	0	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	CDS	8386142	8386190	0.98	+	0	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	exon	8386142	8386190	.	+	.	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	intron	8386191	8386276	.	+	.	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	CDS	8386277	8386414	0.96	+	2	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	exon	8386277	8386414	.	+	.	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	intron	8386415	8386506	.	+	.	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	CDS	8386507	8386555	0.97	+	2	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	exon	8386507	8386555	.	+	.	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	intron	8386556	8386642	.	+	.	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	CDS	8386643	8386679	0.97	+	1	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	exon	8386643	8386679	.	+	.	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	stop_codon	8386680	8386682	.	+	0	transcript_id "Ledus.S1G086200.t1"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	transcript	8386142	8386707	.	+	.	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	start_codon	8386142	8386144	.	+	0	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	CDS	8386142	8386190	0.92	+	0	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	exon	8386142	8386190	.	+	.	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	intron	8386191	8386276	.	+	.	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	CDS	8386277	8386414	0.89	+	2	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	exon	8386277	8386414	.	+	.	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	intron	8386415	8386516	.	+	.	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	CDS	8386517	8386555	0.68	+	2	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	exon	8386517	8386555	.	+	.	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	intron	8386556	8386642	.	+	.	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	CDS	8386643	8386707	0.7	+	2	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	exon	8386643	8386707	.	+	.	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
Ledus.S1	AUGUSTUS	stop_codon	8386708	8386710	.	+	0	transcript_id "Ledus.S1G086200.t2"; gene_id "Ledus.S1G086200"
# This transcript jg12163.t2 is derived from g5782.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12164.t1 is derived from g5783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10062331	10063118	.	+	.	Ledus.S4G132000
Ledus.S4	AUGUSTUS	transcript	10062331	10063118	.	+	.	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	start_codon	10062331	10062333	.	+	0	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	CDS	10062331	10062386	0.51	+	0	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	exon	10062331	10062386	.	+	.	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	intron	10062387	10062458	.	+	.	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	CDS	10062459	10062521	0.89	+	1	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	exon	10062459	10062521	.	+	.	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	intron	10062522	10062625	.	+	.	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	CDS	10062626	10062715	0.85	+	1	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	exon	10062626	10062715	.	+	.	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	intron	10062716	10062851	.	+	.	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	CDS	10062852	10062909	0.84	+	1	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	exon	10062852	10062909	.	+	.	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	intron	10062910	10062995	.	+	.	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	CDS	10062996	10063118	0.74	+	0	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	exon	10062996	10063118	.	+	.	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
Ledus.S4	AUGUSTUS	stop_codon	10063119	10063121	.	+	0	transcript_id "Ledus.S4G132000.t1"; gene_id "Ledus.S4G132000"
# This transcript jg9297.t2 is derived from g10327.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9298.t1 is derived from g10328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5866854	5868095	.	-	.	Ledus.S3G077500
Ledus.S3	AUGUSTUS	transcript	5866854	5868095	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	stop_codon	5866851	5866853	.	-	0	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	CDS	5866854	5866934	0.92	-	0	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	exon	5866854	5866934	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	intron	5866935	5867024	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	CDS	5867025	5867060	0.95	-	0	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	exon	5867025	5867060	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	intron	5867061	5867153	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	CDS	5867154	5867233	0.95	-	2	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	exon	5867154	5867233	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	intron	5867234	5867309	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	CDS	5867310	5867321	0.94	-	2	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	exon	5867310	5867321	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	intron	5867322	5867456	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	CDS	5867457	5867468	0.87	-	2	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	exon	5867457	5867468	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	intron	5867469	5867534	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	CDS	5867535	5867635	0.99	-	1	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	exon	5867535	5867635	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	intron	5867636	5867733	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	CDS	5867734	5867908	0.85	-	2	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	exon	5867734	5867908	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	intron	5867909	5868055	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	CDS	5868056	5868095	0.85	-	0	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	exon	5868056	5868095	.	-	.	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
Ledus.S3	AUGUSTUS	start_codon	5868093	5868095	.	-	0	transcript_id "Ledus.S3G077500.t1"; gene_id "Ledus.S3G077500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11488.t1 is derived from g5106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4886248	4887900	.	-	.	Ledus.S4G064400
Ledus.S4	AUGUSTUS	transcript	4886248	4887900	.	-	.	transcript_id "Ledus.S4G064400.t1"; gene_id "Ledus.S4G064400"
Ledus.S4	AUGUSTUS	stop_codon	4886245	4886247	.	-	0	transcript_id "Ledus.S4G064400.t1"; gene_id "Ledus.S4G064400"
Ledus.S4	AUGUSTUS	CDS	4886248	4887900	0.91	-	0	transcript_id "Ledus.S4G064400.t1"; gene_id "Ledus.S4G064400"
Ledus.S4	AUGUSTUS	exon	4886248	4887900	.	-	.	transcript_id "Ledus.S4G064400.t1"; gene_id "Ledus.S4G064400"
Ledus.S4	AUGUSTUS	start_codon	4887898	4887900	.	-	0	transcript_id "Ledus.S4G064400.t1"; gene_id "Ledus.S4G064400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1292.t1 is derived from g8153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9129306	9131971	.	-	.	Ledus.S2G117400
Ledus.S2	AUGUSTUS	transcript	9129306	9131971	.	-	.	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	stop_codon	9129303	9129305	.	-	0	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	CDS	9129306	9129345	0.98	-	1	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	exon	9129306	9129345	.	-	.	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	intron	9129346	9129511	.	-	.	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	CDS	9129512	9129642	1	-	0	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	exon	9129512	9129642	.	-	.	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	intron	9129643	9129821	.	-	.	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	CDS	9129822	9129920	1	-	0	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	exon	9129822	9129920	.	-	.	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	intron	9129921	9130076	.	-	.	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	CDS	9130077	9130164	1	-	1	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	exon	9130077	9130164	.	-	.	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	intron	9130165	9130278	.	-	.	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	CDS	9130279	9130331	1	-	0	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	exon	9130279	9130331	.	-	.	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	intron	9130332	9130474	.	-	.	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	CDS	9130475	9131971	0.48	-	0	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	exon	9130475	9131971	.	-	.	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
Ledus.S2	AUGUSTUS	start_codon	9131969	9131971	.	-	0	transcript_id "Ledus.S2G117400.t1"; gene_id "Ledus.S2G117400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5551.t1 is derived from g2990.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25078967	25081901	.	+	.	Ledus.S1G297200
Ledus.S1	AUGUSTUS	transcript	25079496	25081901	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	start_codon	25079496	25079498	.	+	0	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25079496	25079528	0.89	+	0	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25079496	25079528	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25079529	25079742	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25079743	25079934	0.98	+	0	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25079743	25079934	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25079935	25080042	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25080043	25080264	0.99	+	0	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25080043	25080264	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25080265	25080364	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25080365	25080541	1	+	0	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25080365	25080541	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25080542	25080661	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25080662	25080728	1	+	0	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25080662	25080728	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25080729	25080820	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25080821	25080909	1	+	2	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25080821	25080909	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25080910	25080992	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25080993	25081118	1	+	0	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25080993	25081118	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25081119	25081212	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25081213	25081350	1	+	0	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25081213	25081350	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25081351	25081445	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25081446	25081610	1	+	0	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25081446	25081610	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25081611	25081696	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25081697	25081751	1	+	0	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25081697	25081751	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25081752	25081839	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25081840	25081901	1	+	2	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25081840	25081901	.	+	.	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	stop_codon	25081902	25081904	.	+	0	transcript_id "Ledus.S1G297200.t1"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	transcript	25078967	25081901	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	start_codon	25078967	25078969	.	+	0	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25078967	25079106	0.86	+	0	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25078967	25079106	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25079107	25079297	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25079298	25079313	0.64	+	1	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25079298	25079313	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25079314	25079742	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25079743	25079934	0.99	+	0	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25079743	25079934	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25079935	25080042	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25080043	25080264	0.99	+	0	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25080043	25080264	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25080265	25080364	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25080365	25080541	1	+	0	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25080365	25080541	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25080542	25080661	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25080662	25080728	0.99	+	0	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25080662	25080728	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25080729	25080820	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25080821	25080909	1	+	2	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25080821	25080909	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25080910	25080992	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25080993	25081118	1	+	0	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25080993	25081118	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25081119	25081212	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25081213	25081350	1	+	0	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25081213	25081350	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25081351	25081445	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25081446	25081610	1	+	0	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25081446	25081610	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25081611	25081696	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25081697	25081751	1	+	0	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25081697	25081751	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	intron	25081752	25081839	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	CDS	25081840	25081901	1	+	2	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	exon	25081840	25081901	.	+	.	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
Ledus.S1	AUGUSTUS	stop_codon	25081902	25081904	.	+	0	transcript_id "Ledus.S1G297200.t2"; gene_id "Ledus.S1G297200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5336.t1 is derived from g2775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23423442	23423734	.	+	.	Ledus.S1G275700
Ledus.S1	AUGUSTUS	transcript	23423442	23423734	.	+	.	transcript_id "Ledus.S1G275700.t1"; gene_id "Ledus.S1G275700"
Ledus.S1	AUGUSTUS	start_codon	23423442	23423444	.	+	0	transcript_id "Ledus.S1G275700.t1"; gene_id "Ledus.S1G275700"
Ledus.S1	AUGUSTUS	CDS	23423442	23423587	0.51	+	0	transcript_id "Ledus.S1G275700.t1"; gene_id "Ledus.S1G275700"
Ledus.S1	AUGUSTUS	exon	23423442	23423587	.	+	.	transcript_id "Ledus.S1G275700.t1"; gene_id "Ledus.S1G275700"
Ledus.S1	AUGUSTUS	intron	23423588	23423670	.	+	.	transcript_id "Ledus.S1G275700.t1"; gene_id "Ledus.S1G275700"
Ledus.S1	AUGUSTUS	CDS	23423671	23423734	0.75	+	1	transcript_id "Ledus.S1G275700.t1"; gene_id "Ledus.S1G275700"
Ledus.S1	AUGUSTUS	exon	23423671	23423734	.	+	.	transcript_id "Ledus.S1G275700.t1"; gene_id "Ledus.S1G275700"
Ledus.S1	AUGUSTUS	stop_codon	23423735	23423737	.	+	0	transcript_id "Ledus.S1G275700.t1"; gene_id "Ledus.S1G275700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5323.t1 is derived from g2762.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23319044	23321114	.	+	.	Ledus.S1G274400
Ledus.S1	AUGUSTUS	transcript	23319044	23321114	.	+	.	transcript_id "Ledus.S1G274400.t1"; gene_id "Ledus.S1G274400"
Ledus.S1	AUGUSTUS	start_codon	23319044	23319046	.	+	0	transcript_id "Ledus.S1G274400.t1"; gene_id "Ledus.S1G274400"
Ledus.S1	AUGUSTUS	CDS	23319044	23320075	0.62	+	0	transcript_id "Ledus.S1G274400.t1"; gene_id "Ledus.S1G274400"
Ledus.S1	AUGUSTUS	exon	23319044	23320075	.	+	.	transcript_id "Ledus.S1G274400.t1"; gene_id "Ledus.S1G274400"
Ledus.S1	AUGUSTUS	intron	23320076	23320148	.	+	.	transcript_id "Ledus.S1G274400.t1"; gene_id "Ledus.S1G274400"
Ledus.S1	AUGUSTUS	CDS	23320149	23321114	1	+	0	transcript_id "Ledus.S1G274400.t1"; gene_id "Ledus.S1G274400"
Ledus.S1	AUGUSTUS	exon	23320149	23321114	.	+	.	transcript_id "Ledus.S1G274400.t1"; gene_id "Ledus.S1G274400"
Ledus.S1	AUGUSTUS	stop_codon	23321115	23321117	.	+	0	transcript_id "Ledus.S1G274400.t1"; gene_id "Ledus.S1G274400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3502.t1 is derived from g937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8817679	8823203	.	-	.	Ledus.S1G092300
Ledus.S1	AUGUSTUS	transcript	8817679	8823203	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	stop_codon	8817676	8817678	.	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8817679	8817704	0.66	-	2	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8817679	8817704	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8817705	8817797	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8817798	8817892	0.64	-	1	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8817798	8817892	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8817893	8818082	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8818083	8818114	0.99	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8818083	8818114	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8818115	8818214	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8818215	8818289	1	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8818215	8818289	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8818290	8818518	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8818519	8818632	1	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8818519	8818632	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8818633	8818822	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8818823	8818882	1	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8818823	8818882	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8818883	8819068	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8819069	8819304	1	-	2	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8819069	8819304	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8819305	8819389	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8819390	8819501	1	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8819390	8819501	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8819502	8819591	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8819592	8819810	1	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8819592	8819810	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8819811	8819891	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8819892	8819990	1	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8819892	8819990	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8819991	8820099	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8820100	8820165	0.99	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8820100	8820165	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8820166	8820271	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8820272	8820355	0.94	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8820272	8820355	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8820356	8820539	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8820540	8820599	1	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8820540	8820599	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8820600	8820735	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8820736	8821020	1	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8820736	8821020	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8821021	8821177	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8821178	8821225	1	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8821178	8821225	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8821226	8821333	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8821334	8821395	1	-	2	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8821334	8821395	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8821396	8821610	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8821611	8821725	1	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8821611	8821725	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8821726	8821911	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8821912	8821986	1	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8821912	8821986	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8821987	8822122	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8822123	8822194	1	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8822123	8822194	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8822195	8822398	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8822399	8822967	1	-	2	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8822399	8822967	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	intron	8822968	8823061	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	CDS	8823062	8823203	0.78	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	exon	8823062	8823203	.	-	.	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
Ledus.S1	AUGUSTUS	start_codon	8823201	8823203	.	-	0	transcript_id "Ledus.S1G092300.t1"; gene_id "Ledus.S1G092300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg316.t1 is derived from g7177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1597532	1597759	.	+	.	Ledus.S2G019800
Ledus.S2	AUGUSTUS	transcript	1597532	1597759	.	+	.	transcript_id "Ledus.S2G019800.t1"; gene_id "Ledus.S2G019800"
Ledus.S2	AUGUSTUS	start_codon	1597532	1597534	.	+	0	transcript_id "Ledus.S2G019800.t1"; gene_id "Ledus.S2G019800"
Ledus.S2	AUGUSTUS	CDS	1597532	1597759	0.32	+	0	transcript_id "Ledus.S2G019800.t1"; gene_id "Ledus.S2G019800"
Ledus.S2	AUGUSTUS	exon	1597532	1597759	.	+	.	transcript_id "Ledus.S2G019800.t1"; gene_id "Ledus.S2G019800"
Ledus.S2	AUGUSTUS	stop_codon	1597760	1597762	.	+	0	transcript_id "Ledus.S2G019800.t1"; gene_id "Ledus.S2G019800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7997.t1 is derived from g12668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8403804	8406728	.	+	.	Ledus.S5G077500
Ledus.S5	AUGUSTUS	transcript	8403804	8406728	.	+	.	transcript_id "Ledus.S5G077500.t1"; gene_id "Ledus.S5G077500"
Ledus.S5	AUGUSTUS	start_codon	8403804	8403806	.	+	0	transcript_id "Ledus.S5G077500.t1"; gene_id "Ledus.S5G077500"
Ledus.S5	AUGUSTUS	CDS	8403804	8406107	0.94	+	0	transcript_id "Ledus.S5G077500.t1"; gene_id "Ledus.S5G077500"
Ledus.S5	AUGUSTUS	exon	8403804	8406107	.	+	.	transcript_id "Ledus.S5G077500.t1"; gene_id "Ledus.S5G077500"
Ledus.S5	AUGUSTUS	intron	8406108	8406321	.	+	.	transcript_id "Ledus.S5G077500.t1"; gene_id "Ledus.S5G077500"
Ledus.S5	AUGUSTUS	CDS	8406322	8406410	0.99	+	0	transcript_id "Ledus.S5G077500.t1"; gene_id "Ledus.S5G077500"
Ledus.S5	AUGUSTUS	exon	8406322	8406410	.	+	.	transcript_id "Ledus.S5G077500.t1"; gene_id "Ledus.S5G077500"
Ledus.S5	AUGUSTUS	intron	8406411	8406514	.	+	.	transcript_id "Ledus.S5G077500.t1"; gene_id "Ledus.S5G077500"
Ledus.S5	AUGUSTUS	CDS	8406515	8406728	0.96	+	1	transcript_id "Ledus.S5G077500.t1"; gene_id "Ledus.S5G077500"
Ledus.S5	AUGUSTUS	exon	8406515	8406728	.	+	.	transcript_id "Ledus.S5G077500.t1"; gene_id "Ledus.S5G077500"
Ledus.S5	AUGUSTUS	stop_codon	8406729	8406731	.	+	0	transcript_id "Ledus.S5G077500.t1"; gene_id "Ledus.S5G077500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3900.t1 is derived from g1336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13488161	13489287	.	-	.	Ledus.S1G132100
Ledus.S1	AUGUSTUS	transcript	13488161	13489287	.	-	.	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	stop_codon	13488158	13488160	.	-	0	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	CDS	13488161	13488347	1	-	1	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	exon	13488161	13488347	.	-	.	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	intron	13488348	13488441	.	-	.	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	CDS	13488442	13488559	1	-	2	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	exon	13488442	13488559	.	-	.	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	intron	13488560	13488661	.	-	.	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	CDS	13488662	13488797	1	-	0	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	exon	13488662	13488797	.	-	.	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	intron	13488798	13488908	.	-	.	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	CDS	13488909	13489094	0.8	-	0	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	exon	13488909	13489094	.	-	.	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	intron	13489095	13489173	.	-	.	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	CDS	13489174	13489287	0.47	-	0	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	exon	13489174	13489287	.	-	.	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
Ledus.S1	AUGUSTUS	start_codon	13489285	13489287	.	-	0	transcript_id "Ledus.S1G132100.t1"; gene_id "Ledus.S1G132100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13131.t1 is derived from g6941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6642471	6642950	.	+	.	Ledus.S6G019300
Ledus.S6	AUGUSTUS	transcript	6642471	6642950	.	+	.	transcript_id "Ledus.S6G019300.t1"; gene_id "Ledus.S6G019300"
Ledus.S6	AUGUSTUS	start_codon	6642471	6642473	.	+	0	transcript_id "Ledus.S6G019300.t1"; gene_id "Ledus.S6G019300"
Ledus.S6	AUGUSTUS	CDS	6642471	6642728	0.35	+	0	transcript_id "Ledus.S6G019300.t1"; gene_id "Ledus.S6G019300"
Ledus.S6	AUGUSTUS	exon	6642471	6642728	.	+	.	transcript_id "Ledus.S6G019300.t1"; gene_id "Ledus.S6G019300"
Ledus.S6	AUGUSTUS	intron	6642729	6642812	.	+	.	transcript_id "Ledus.S6G019300.t1"; gene_id "Ledus.S6G019300"
Ledus.S6	AUGUSTUS	CDS	6642813	6642950	0.9	+	0	transcript_id "Ledus.S6G019300.t1"; gene_id "Ledus.S6G019300"
Ledus.S6	AUGUSTUS	exon	6642813	6642950	.	+	.	transcript_id "Ledus.S6G019300.t1"; gene_id "Ledus.S6G019300"
Ledus.S6	AUGUSTUS	stop_codon	6642951	6642953	.	+	0	transcript_id "Ledus.S6G019300.t1"; gene_id "Ledus.S6G019300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12574.t1 is derived from g6196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12931476	12932159	.	+	.	Ledus.S4G173000
Ledus.S4	AUGUSTUS	transcript	12931476	12932159	.	+	.	transcript_id "Ledus.S4G173000.t1"; gene_id "Ledus.S4G173000"
Ledus.S4	AUGUSTUS	start_codon	12931476	12931478	.	+	0	transcript_id "Ledus.S4G173000.t1"; gene_id "Ledus.S4G173000"
Ledus.S4	AUGUSTUS	CDS	12931476	12932159	0.54	+	0	transcript_id "Ledus.S4G173000.t1"; gene_id "Ledus.S4G173000"
Ledus.S4	AUGUSTUS	exon	12931476	12932159	.	+	.	transcript_id "Ledus.S4G173000.t1"; gene_id "Ledus.S4G173000"
Ledus.S4	AUGUSTUS	stop_codon	12932160	12932162	.	+	0	transcript_id "Ledus.S4G173000.t1"; gene_id "Ledus.S4G173000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8351.t1 is derived from g13023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10948818	10952723	.	+	.	Ledus.S5G112900
Ledus.S5	AUGUSTUS	transcript	10948818	10952723	.	+	.	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	start_codon	10948818	10948820	.	+	0	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	CDS	10948818	10949969	0.76	+	0	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	exon	10948818	10949969	.	+	.	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	intron	10949970	10950210	.	+	.	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	CDS	10950211	10950291	1	+	0	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	exon	10950211	10950291	.	+	.	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	intron	10950292	10950406	.	+	.	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	CDS	10950407	10952106	0.66	+	0	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	exon	10950407	10952106	.	+	.	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	intron	10952107	10952312	.	+	.	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	CDS	10952313	10952354	0.68	+	1	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	exon	10952313	10952354	.	+	.	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	intron	10952355	10952450	.	+	.	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	CDS	10952451	10952522	0.73	+	1	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	exon	10952451	10952522	.	+	.	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	intron	10952523	10952641	.	+	.	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	CDS	10952642	10952723	0.67	+	1	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	exon	10952642	10952723	.	+	.	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
Ledus.S5	AUGUSTUS	stop_codon	10952724	10952726	.	+	0	transcript_id "Ledus.S5G112900.t1"; gene_id "Ledus.S5G112900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12330.t1 is derived from g5951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11229721	11232114	.	-	.	Ledus.S4G148600
Ledus.S4	AUGUSTUS	transcript	11229721	11232114	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	stop_codon	11229718	11229720	.	-	0	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	CDS	11229721	11230171	0.93	-	1	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	exon	11229721	11230171	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	intron	11230172	11230244	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	CDS	11230245	11230315	1	-	0	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	exon	11230245	11230315	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	intron	11230316	11230401	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	CDS	11230402	11230459	1	-	1	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	exon	11230402	11230459	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	intron	11230460	11230584	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	CDS	11230585	11230724	0.81	-	0	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	exon	11230585	11230724	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	intron	11230725	11230810	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	CDS	11230811	11230928	1	-	1	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	exon	11230811	11230928	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	intron	11230929	11231004	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	CDS	11231005	11231125	1	-	2	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	exon	11231005	11231125	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	intron	11231126	11231191	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	CDS	11231192	11231264	1	-	0	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	exon	11231192	11231264	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	intron	11231265	11231364	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	CDS	11231365	11231516	1	-	2	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	exon	11231365	11231516	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	intron	11231517	11231608	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	CDS	11231609	11231699	1	-	0	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	exon	11231609	11231699	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	intron	11231700	11231784	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	CDS	11231785	11231866	1	-	1	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	exon	11231785	11231866	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	intron	11231867	11231947	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	CDS	11231948	11231995	0.96	-	1	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	exon	11231948	11231995	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	intron	11231996	11232079	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	CDS	11232080	11232114	0.95	-	0	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	exon	11232080	11232114	.	-	.	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
Ledus.S4	AUGUSTUS	start_codon	11232112	11232114	.	-	0	transcript_id "Ledus.S4G148600.t1"; gene_id "Ledus.S4G148600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2429.t1 is derived from g9292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18063889	18065034	.	-	.	Ledus.S2G231100
Ledus.S2	AUGUSTUS	transcript	18063889	18065034	.	-	.	transcript_id "Ledus.S2G231100.t1"; gene_id "Ledus.S2G231100"
Ledus.S2	AUGUSTUS	stop_codon	18063886	18063888	.	-	0	transcript_id "Ledus.S2G231100.t1"; gene_id "Ledus.S2G231100"
Ledus.S2	AUGUSTUS	CDS	18063889	18065034	0.91	-	0	transcript_id "Ledus.S2G231100.t1"; gene_id "Ledus.S2G231100"
Ledus.S2	AUGUSTUS	exon	18063889	18065034	.	-	.	transcript_id "Ledus.S2G231100.t1"; gene_id "Ledus.S2G231100"
Ledus.S2	AUGUSTUS	start_codon	18065032	18065034	.	-	0	transcript_id "Ledus.S2G231100.t1"; gene_id "Ledus.S2G231100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4834.t1 is derived from g2272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20062217	20062522	.	+	.	Ledus.S1G225500
Ledus.S1	AUGUSTUS	transcript	20062217	20062522	.	+	.	transcript_id "Ledus.S1G225500.t1"; gene_id "Ledus.S1G225500"
Ledus.S1	AUGUSTUS	start_codon	20062217	20062219	.	+	0	transcript_id "Ledus.S1G225500.t1"; gene_id "Ledus.S1G225500"
Ledus.S1	AUGUSTUS	CDS	20062217	20062303	0.9	+	0	transcript_id "Ledus.S1G225500.t1"; gene_id "Ledus.S1G225500"
Ledus.S1	AUGUSTUS	exon	20062217	20062303	.	+	.	transcript_id "Ledus.S1G225500.t1"; gene_id "Ledus.S1G225500"
Ledus.S1	AUGUSTUS	intron	20062304	20062375	.	+	.	transcript_id "Ledus.S1G225500.t1"; gene_id "Ledus.S1G225500"
Ledus.S1	AUGUSTUS	CDS	20062376	20062522	0.55	+	0	transcript_id "Ledus.S1G225500.t1"; gene_id "Ledus.S1G225500"
Ledus.S1	AUGUSTUS	exon	20062376	20062522	.	+	.	transcript_id "Ledus.S1G225500.t1"; gene_id "Ledus.S1G225500"
Ledus.S1	AUGUSTUS	stop_codon	20062523	20062525	.	+	0	transcript_id "Ledus.S1G225500.t1"; gene_id "Ledus.S1G225500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2829.t1 is derived from g263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3991184	3991823	.	-	.	Ledus.S1G025000
Ledus.S1	AUGUSTUS	transcript	3991184	3991823	.	-	.	transcript_id "Ledus.S1G025000.t1"; gene_id "Ledus.S1G025000"
Ledus.S1	AUGUSTUS	stop_codon	3991181	3991183	.	-	0	transcript_id "Ledus.S1G025000.t1"; gene_id "Ledus.S1G025000"
Ledus.S1	AUGUSTUS	CDS	3991184	3991629	0.98	-	2	transcript_id "Ledus.S1G025000.t1"; gene_id "Ledus.S1G025000"
Ledus.S1	AUGUSTUS	exon	3991184	3991629	.	-	.	transcript_id "Ledus.S1G025000.t1"; gene_id "Ledus.S1G025000"
Ledus.S1	AUGUSTUS	intron	3991630	3991801	.	-	.	transcript_id "Ledus.S1G025000.t1"; gene_id "Ledus.S1G025000"
Ledus.S1	AUGUSTUS	CDS	3991802	3991823	1	-	0	transcript_id "Ledus.S1G025000.t1"; gene_id "Ledus.S1G025000"
Ledus.S1	AUGUSTUS	exon	3991802	3991823	.	-	.	transcript_id "Ledus.S1G025000.t1"; gene_id "Ledus.S1G025000"
Ledus.S1	AUGUSTUS	start_codon	3991821	3991823	.	-	0	transcript_id "Ledus.S1G025000.t1"; gene_id "Ledus.S1G025000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7515.t1 is derived from g12186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3548179	3548704	.	-	.	Ledus.S5G029300
Ledus.S5	AUGUSTUS	transcript	3548179	3548704	.	-	.	transcript_id "Ledus.S5G029300.t1"; gene_id "Ledus.S5G029300"
Ledus.S5	AUGUSTUS	stop_codon	3548176	3548178	.	-	0	transcript_id "Ledus.S5G029300.t1"; gene_id "Ledus.S5G029300"
Ledus.S5	AUGUSTUS	CDS	3548179	3548179	0.35	-	1	transcript_id "Ledus.S5G029300.t1"; gene_id "Ledus.S5G029300"
Ledus.S5	AUGUSTUS	exon	3548179	3548179	.	-	.	transcript_id "Ledus.S5G029300.t1"; gene_id "Ledus.S5G029300"
Ledus.S5	AUGUSTUS	intron	3548180	3548378	.	-	.	transcript_id "Ledus.S5G029300.t1"; gene_id "Ledus.S5G029300"
Ledus.S5	AUGUSTUS	CDS	3548379	3548704	0.42	-	0	transcript_id "Ledus.S5G029300.t1"; gene_id "Ledus.S5G029300"
Ledus.S5	AUGUSTUS	exon	3548379	3548704	.	-	.	transcript_id "Ledus.S5G029300.t1"; gene_id "Ledus.S5G029300"
Ledus.S5	AUGUSTUS	start_codon	3548702	3548704	.	-	0	transcript_id "Ledus.S5G029300.t1"; gene_id "Ledus.S5G029300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1515.t1 is derived from g8376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10658818	10659939	.	-	.	Ledus.S2G139700
Ledus.S2	AUGUSTUS	transcript	10658818	10659939	.	-	.	transcript_id "Ledus.S2G139700.t1"; gene_id "Ledus.S2G139700"
Ledus.S2	AUGUSTUS	stop_codon	10658815	10658817	.	-	0	transcript_id "Ledus.S2G139700.t1"; gene_id "Ledus.S2G139700"
Ledus.S2	AUGUSTUS	CDS	10658818	10659939	0.99	-	0	transcript_id "Ledus.S2G139700.t1"; gene_id "Ledus.S2G139700"
Ledus.S2	AUGUSTUS	exon	10658818	10659939	.	-	.	transcript_id "Ledus.S2G139700.t1"; gene_id "Ledus.S2G139700"
Ledus.S2	AUGUSTUS	start_codon	10659937	10659939	.	-	0	transcript_id "Ledus.S2G139700.t1"; gene_id "Ledus.S2G139700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6390.t1 is derived from g3833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30973582	30974221	.	+	.	Ledus.S1G381100
Ledus.S1	AUGUSTUS	transcript	30973582	30974221	.	+	.	transcript_id "Ledus.S1G381100.t1"; gene_id "Ledus.S1G381100"
Ledus.S1	AUGUSTUS	start_codon	30973582	30973584	.	+	0	transcript_id "Ledus.S1G381100.t1"; gene_id "Ledus.S1G381100"
Ledus.S1	AUGUSTUS	CDS	30973582	30973724	0.92	+	0	transcript_id "Ledus.S1G381100.t1"; gene_id "Ledus.S1G381100"
Ledus.S1	AUGUSTUS	exon	30973582	30973724	.	+	.	transcript_id "Ledus.S1G381100.t1"; gene_id "Ledus.S1G381100"
Ledus.S1	AUGUSTUS	intron	30973725	30973908	.	+	.	transcript_id "Ledus.S1G381100.t1"; gene_id "Ledus.S1G381100"
Ledus.S1	AUGUSTUS	CDS	30973909	30974079	0.95	+	1	transcript_id "Ledus.S1G381100.t1"; gene_id "Ledus.S1G381100"
Ledus.S1	AUGUSTUS	exon	30973909	30974079	.	+	.	transcript_id "Ledus.S1G381100.t1"; gene_id "Ledus.S1G381100"
Ledus.S1	AUGUSTUS	intron	30974080	30974217	.	+	.	transcript_id "Ledus.S1G381100.t1"; gene_id "Ledus.S1G381100"
Ledus.S1	AUGUSTUS	CDS	30974218	30974221	0.93	+	1	transcript_id "Ledus.S1G381100.t1"; gene_id "Ledus.S1G381100"
Ledus.S1	AUGUSTUS	exon	30974218	30974221	.	+	.	transcript_id "Ledus.S1G381100.t1"; gene_id "Ledus.S1G381100"
Ledus.S1	AUGUSTUS	stop_codon	30974222	30974224	.	+	0	transcript_id "Ledus.S1G381100.t1"; gene_id "Ledus.S1G381100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7014.t1 is derived from g6545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	810894	817767	.	-	.	Ledus.C7G007500
Ledus.C7	AUGUSTUS	transcript	810894	817767	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	stop_codon	810891	810893	.	-	0	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	CDS	810894	812590	0.78	-	2	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	exon	810894	812590	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	intron	812591	812733	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	CDS	812734	812765	0.74	-	1	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	exon	812734	812765	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	intron	812766	812984	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	CDS	812985	813283	0.76	-	0	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	exon	812985	813283	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	intron	813284	813409	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	CDS	813410	815206	0.92	-	0	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	exon	813410	815206	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	intron	815207	815356	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	CDS	815357	815438	0.63	-	1	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	exon	815357	815438	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	intron	815439	815603	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	CDS	815604	815763	0.8	-	2	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	exon	815604	815763	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	intron	815764	815865	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	CDS	815866	815964	0.99	-	2	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	exon	815866	815964	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	intron	815965	816089	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	CDS	816090	816278	0.92	-	2	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	exon	816090	816278	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	intron	816279	816403	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	CDS	816404	816936	0.79	-	1	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	exon	816404	816936	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	intron	816937	817258	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	CDS	817259	817767	0.93	-	0	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	exon	817259	817767	.	-	.	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
Ledus.C7	AUGUSTUS	start_codon	817765	817767	.	-	0	transcript_id "Ledus.C7G007500.t1"; gene_id "Ledus.C7G007500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg653.t1 is derived from g7514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3899428	3902379	.	+	.	Ledus.S2G053500
Ledus.S2	AUGUSTUS	transcript	3899428	3902379	.	+	.	transcript_id "Ledus.S2G053500.t1"; gene_id "Ledus.S2G053500"
Ledus.S2	AUGUSTUS	start_codon	3899428	3899430	.	+	0	transcript_id "Ledus.S2G053500.t1"; gene_id "Ledus.S2G053500"
Ledus.S2	AUGUSTUS	CDS	3899428	3902379	0.49	+	0	transcript_id "Ledus.S2G053500.t1"; gene_id "Ledus.S2G053500"
Ledus.S2	AUGUSTUS	exon	3899428	3902379	.	+	.	transcript_id "Ledus.S2G053500.t1"; gene_id "Ledus.S2G053500"
Ledus.S2	AUGUSTUS	stop_codon	3902380	3902382	.	+	0	transcript_id "Ledus.S2G053500.t1"; gene_id "Ledus.S2G053500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4541.t1 is derived from g1978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17594724	17597439	.	-	.	Ledus.S1G196200
Ledus.S1	AUGUSTUS	transcript	17594724	17597439	.	-	.	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	stop_codon	17594721	17594723	.	-	0	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	CDS	17594724	17596448	0.7	-	0	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	exon	17594724	17596448	.	-	.	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	intron	17596449	17596619	.	-	.	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	CDS	17596620	17596728	0.43	-	1	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	exon	17596620	17596728	.	-	.	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	intron	17596729	17596930	.	-	.	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	CDS	17596931	17597031	1	-	0	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	exon	17596931	17597031	.	-	.	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	intron	17597032	17597139	.	-	.	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	CDS	17597140	17597244	1	-	0	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	exon	17597140	17597244	.	-	.	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	intron	17597245	17597313	.	-	.	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	CDS	17597314	17597439	0.9	-	0	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	exon	17597314	17597439	.	-	.	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
Ledus.S1	AUGUSTUS	start_codon	17597437	17597439	.	-	0	transcript_id "Ledus.S1G196200.t1"; gene_id "Ledus.S1G196200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg741.t1 is derived from g7602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4703673	4704968	.	+	.	Ledus.S2G062300
Ledus.S2	AUGUSTUS	transcript	4703673	4704968	.	+	.	transcript_id "Ledus.S2G062300.t1"; gene_id "Ledus.S2G062300"
Ledus.S2	AUGUSTUS	start_codon	4703673	4703675	.	+	0	transcript_id "Ledus.S2G062300.t1"; gene_id "Ledus.S2G062300"
Ledus.S2	AUGUSTUS	CDS	4703673	4704968	0.89	+	0	transcript_id "Ledus.S2G062300.t1"; gene_id "Ledus.S2G062300"
Ledus.S2	AUGUSTUS	exon	4703673	4704968	.	+	.	transcript_id "Ledus.S2G062300.t1"; gene_id "Ledus.S2G062300"
Ledus.S2	AUGUSTUS	stop_codon	4704969	4704971	.	+	0	transcript_id "Ledus.S2G062300.t1"; gene_id "Ledus.S2G062300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg4643.t1 is derived from g2080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18595099	18601001	.	-	.	Ledus.S1G206400
Ledus.S1	AUGUSTUS	transcript	18595099	18601001	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	stop_codon	18595096	18595098	.	-	0	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595099	18595233	0.99	-	0	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595099	18595233	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595234	18595344	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595345	18595409	1	-	2	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595345	18595409	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595410	18595496	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595497	18595578	1	-	0	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595497	18595578	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595579	18595672	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595673	18595831	1	-	0	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595673	18595831	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595832	18595927	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595928	18595991	1	-	1	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595928	18595991	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595992	18596312	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18596313	18596401	1	-	0	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18596313	18596401	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18596402	18596828	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18596829	18596904	1	-	1	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18596829	18596904	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18596905	18597075	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597076	18597174	1	-	1	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597076	18597174	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18597175	18597340	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597341	18597456	1	-	0	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597341	18597456	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18597457	18597568	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597569	18597681	0.99	-	2	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597569	18597681	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18597682	18597783	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597784	18597844	1	-	0	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597784	18597844	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18597845	18597944	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597945	18598004	1	-	0	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597945	18598004	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18598005	18598119	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18598120	18598164	1	-	0	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18598120	18598164	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18598165	18598454	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18598455	18598525	1	-	2	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18598455	18598525	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18598526	18598611	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18598612	18598662	1	-	2	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18598612	18598662	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18598663	18599390	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18599391	18599458	1	-	1	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18599391	18599458	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18599459	18599609	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18599610	18599726	0.98	-	1	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18599610	18599726	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18599727	18599827	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18599828	18599988	1	-	0	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18599828	18599988	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18599989	18600863	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18600864	18601001	0.82	-	0	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18600864	18601001	.	-	.	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	start_codon	18600999	18601001	.	-	0	transcript_id "Ledus.S1G206400.t1"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	transcript	18595099	18598660	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	stop_codon	18595096	18595098	.	-	0	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595099	18595233	0.97	-	0	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595099	18595233	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595234	18595344	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595345	18595409	1	-	2	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595345	18595409	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595410	18595496	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595497	18595578	1	-	0	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595497	18595578	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595579	18595672	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595673	18595831	1	-	0	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595673	18595831	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595832	18595927	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595928	18595994	0.97	-	1	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595928	18595994	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595995	18596312	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18596313	18596401	1	-	0	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18596313	18596401	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18596402	18596828	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18596829	18596904	1	-	1	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18596829	18596904	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18596905	18597075	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597076	18597174	1	-	1	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597076	18597174	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18597175	18597340	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597341	18597456	1	-	0	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597341	18597456	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18597457	18597568	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597569	18597681	1	-	2	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597569	18597681	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18597682	18597783	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597784	18597844	1	-	0	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597784	18597844	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18597845	18597944	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597945	18598004	1	-	0	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597945	18598004	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18598005	18598119	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18598120	18598164	1	-	0	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18598120	18598164	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18598165	18598454	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18598455	18598525	1	-	2	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18598455	18598525	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18598526	18598611	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18598612	18598660	0.64	-	0	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18598612	18598660	.	-	.	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	start_codon	18598658	18598660	.	-	0	transcript_id "Ledus.S1G206400.t2"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	transcript	18595099	18598660	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	stop_codon	18595096	18595098	.	-	0	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595099	18595233	0.99	-	0	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595099	18595233	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595234	18595344	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595345	18595409	1	-	2	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595345	18595409	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595410	18595496	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595497	18595578	1	-	0	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595497	18595578	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595579	18595672	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595673	18595831	1	-	0	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595673	18595831	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595832	18595927	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18595928	18595991	1	-	1	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18595928	18595991	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18595992	18596312	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18596313	18596401	1	-	0	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18596313	18596401	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18596402	18596828	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18596829	18596904	1	-	1	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18596829	18596904	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18596905	18597075	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597076	18597174	1	-	1	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597076	18597174	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18597175	18597340	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597341	18597456	1	-	0	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597341	18597456	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18597457	18597568	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597569	18597681	1	-	2	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597569	18597681	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18597682	18597783	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597784	18597844	0.99	-	0	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597784	18597844	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18597845	18597944	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18597945	18598004	1	-	0	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18597945	18598004	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18598005	18598119	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18598120	18598164	1	-	0	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18598120	18598164	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18598165	18598454	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18598455	18598525	1	-	2	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18598455	18598525	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18598526	18598611	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18598612	18598660	0.53	-	0	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18598612	18598660	.	-	.	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	start_codon	18598658	18598660	.	-	0	transcript_id "Ledus.S1G206400.t3"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	transcript	18598972	18601001	.	-	.	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	stop_codon	18598969	18598971	.	-	0	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18598972	18599045	0.47	-	2	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18598972	18599045	.	-	.	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18599046	18599390	.	-	.	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18599391	18599458	0.71	-	1	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18599391	18599458	.	-	.	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18599459	18599609	.	-	.	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18599610	18599726	0.7	-	1	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18599610	18599726	.	-	.	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18599727	18599827	.	-	.	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18599828	18599988	0.71	-	0	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18599828	18599988	.	-	.	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	intron	18599989	18600863	.	-	.	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	CDS	18600864	18601001	0.78	-	0	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	exon	18600864	18601001	.	-	.	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
Ledus.S1	AUGUSTUS	start_codon	18600999	18601001	.	-	0	transcript_id "Ledus.S1G206400.t4"; gene_id "Ledus.S1G206400"
# This transcript jg5109.t2 is derived from g2548.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5110.t1 is derived from g2549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21766981	21767642	.	+	.	Ledus.S1G253100
Ledus.S1	AUGUSTUS	transcript	21766981	21767642	.	+	.	transcript_id "Ledus.S1G253100.t1"; gene_id "Ledus.S1G253100"
Ledus.S1	AUGUSTUS	start_codon	21766981	21766983	.	+	0	transcript_id "Ledus.S1G253100.t1"; gene_id "Ledus.S1G253100"
Ledus.S1	AUGUSTUS	CDS	21766981	21767306	0.15	+	0	transcript_id "Ledus.S1G253100.t1"; gene_id "Ledus.S1G253100"
Ledus.S1	AUGUSTUS	exon	21766981	21767306	.	+	.	transcript_id "Ledus.S1G253100.t1"; gene_id "Ledus.S1G253100"
Ledus.S1	AUGUSTUS	intron	21767307	21767484	.	+	.	transcript_id "Ledus.S1G253100.t1"; gene_id "Ledus.S1G253100"
Ledus.S1	AUGUSTUS	CDS	21767485	21767548	1	+	1	transcript_id "Ledus.S1G253100.t1"; gene_id "Ledus.S1G253100"
Ledus.S1	AUGUSTUS	exon	21767485	21767548	.	+	.	transcript_id "Ledus.S1G253100.t1"; gene_id "Ledus.S1G253100"
Ledus.S1	AUGUSTUS	intron	21767549	21767627	.	+	.	transcript_id "Ledus.S1G253100.t1"; gene_id "Ledus.S1G253100"
Ledus.S1	AUGUSTUS	CDS	21767628	21767642	0.75	+	0	transcript_id "Ledus.S1G253100.t1"; gene_id "Ledus.S1G253100"
Ledus.S1	AUGUSTUS	exon	21767628	21767642	.	+	.	transcript_id "Ledus.S1G253100.t1"; gene_id "Ledus.S1G253100"
Ledus.S1	AUGUSTUS	stop_codon	21767643	21767645	.	+	0	transcript_id "Ledus.S1G253100.t1"; gene_id "Ledus.S1G253100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11726.t1 is derived from g5345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6281824	6284104	.	-	.	Ledus.S4G088200
Ledus.S4	AUGUSTUS	transcript	6281824	6284104	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	stop_codon	6281821	6281823	.	-	0	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	CDS	6281824	6282098	0.9	-	2	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	exon	6281824	6282098	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	intron	6282099	6282186	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	CDS	6282187	6282328	0.64	-	0	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	exon	6282187	6282328	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	intron	6282329	6282434	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	CDS	6282435	6282554	0.76	-	0	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	exon	6282435	6282554	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	intron	6282555	6282671	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	CDS	6282672	6282740	1	-	0	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	exon	6282672	6282740	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	intron	6282741	6282909	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	CDS	6282910	6283012	0.94	-	1	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	exon	6282910	6283012	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	intron	6283013	6283117	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	CDS	6283118	6283229	0.91	-	2	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	exon	6283118	6283229	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	intron	6283230	6283330	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	CDS	6283331	6283459	1	-	2	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	exon	6283331	6283459	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	intron	6283460	6283551	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	CDS	6283552	6283708	1	-	0	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	exon	6283552	6283708	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	intron	6283709	6283823	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	CDS	6283824	6283934	1	-	0	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	exon	6283824	6283934	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	intron	6283935	6284011	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	CDS	6284012	6284104	0.92	-	0	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	exon	6284012	6284104	.	-	.	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
Ledus.S4	AUGUSTUS	start_codon	6284102	6284104	.	-	0	transcript_id "Ledus.S4G088200.t1"; gene_id "Ledus.S4G088200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10286.t1 is derived from g11316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14015923	14016264	.	-	.	Ledus.S3G176300
Ledus.S3	AUGUSTUS	transcript	14015923	14016264	.	-	.	transcript_id "Ledus.S3G176300.t1"; gene_id "Ledus.S3G176300"
Ledus.S3	AUGUSTUS	stop_codon	14015920	14015922	.	-	0	transcript_id "Ledus.S3G176300.t1"; gene_id "Ledus.S3G176300"
Ledus.S3	AUGUSTUS	CDS	14015923	14016264	0.97	-	0	transcript_id "Ledus.S3G176300.t1"; gene_id "Ledus.S3G176300"
Ledus.S3	AUGUSTUS	exon	14015923	14016264	.	-	.	transcript_id "Ledus.S3G176300.t1"; gene_id "Ledus.S3G176300"
Ledus.S3	AUGUSTUS	start_codon	14016262	14016264	.	-	0	transcript_id "Ledus.S3G176300.t1"; gene_id "Ledus.S3G176300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2319.t1 is derived from g9182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17152104	17153685	.	-	.	Ledus.S2G220100
Ledus.S2	AUGUSTUS	transcript	17152104	17153685	.	-	.	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	stop_codon	17152101	17152103	.	-	0	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	CDS	17152104	17152380	0.98	-	1	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	exon	17152104	17152380	.	-	.	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	intron	17152381	17152458	.	-	.	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	CDS	17152459	17152532	1	-	0	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	exon	17152459	17152532	.	-	.	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	intron	17152533	17152632	.	-	.	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	CDS	17152633	17152731	1	-	0	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	exon	17152633	17152731	.	-	.	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	intron	17152732	17152931	.	-	.	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	CDS	17152932	17153137	1	-	2	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	exon	17152932	17153137	.	-	.	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	intron	17153138	17153384	.	-	.	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	CDS	17153385	17153685	1	-	0	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	exon	17153385	17153685	.	-	.	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
Ledus.S2	AUGUSTUS	start_codon	17153683	17153685	.	-	0	transcript_id "Ledus.S2G220100.t1"; gene_id "Ledus.S2G220100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5135.t1 is derived from g2574.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21891679	21893803	.	+	.	Ledus.S1G255600
Ledus.S1	AUGUSTUS	transcript	21891679	21893803	.	+	.	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	start_codon	21891679	21891681	.	+	0	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	CDS	21891679	21893267	0.41	+	0	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	exon	21891679	21893267	.	+	.	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	intron	21893268	21893470	.	+	.	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	CDS	21893471	21893490	0.58	+	1	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	exon	21893471	21893490	.	+	.	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	intron	21893491	21893627	.	+	.	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	CDS	21893628	21893700	0.99	+	2	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	exon	21893628	21893700	.	+	.	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	intron	21893701	21893799	.	+	.	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	CDS	21893800	21893803	1	+	1	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	exon	21893800	21893803	.	+	.	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
Ledus.S1	AUGUSTUS	stop_codon	21893804	21893806	.	+	0	transcript_id "Ledus.S1G255600.t1"; gene_id "Ledus.S1G255600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3129.t1 is derived from g564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6159602	6161568	.	-	.	Ledus.S1G055000
Ledus.S1	AUGUSTUS	transcript	6159602	6161568	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	stop_codon	6159599	6159601	.	-	0	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	CDS	6159602	6159739	1	-	0	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	exon	6159602	6159739	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	intron	6159740	6159832	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	CDS	6159833	6159912	1	-	2	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	exon	6159833	6159912	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	intron	6159913	6159997	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	CDS	6159998	6160247	1	-	0	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	exon	6159998	6160247	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	intron	6160248	6160343	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	CDS	6160344	6160527	1	-	1	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	exon	6160344	6160527	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	intron	6160528	6160596	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	CDS	6160597	6160694	1	-	0	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	exon	6160597	6160694	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	intron	6160695	6160777	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	CDS	6160778	6160891	1	-	0	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	exon	6160778	6160891	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	intron	6160892	6160977	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	CDS	6160978	6161232	1	-	0	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	exon	6160978	6161232	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	intron	6161233	6161331	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	CDS	6161332	6161568	0.97	-	0	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	exon	6161332	6161568	.	-	.	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
Ledus.S1	AUGUSTUS	start_codon	6161566	6161568	.	-	0	transcript_id "Ledus.S1G055000.t1"; gene_id "Ledus.S1G055000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9989.t1 is derived from g11019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11759645	11760268	.	-	.	Ledus.S3G146600
Ledus.S3	AUGUSTUS	transcript	11759645	11760268	.	-	.	transcript_id "Ledus.S3G146600.t1"; gene_id "Ledus.S3G146600"
Ledus.S3	AUGUSTUS	stop_codon	11759642	11759644	.	-	0	transcript_id "Ledus.S3G146600.t1"; gene_id "Ledus.S3G146600"
Ledus.S3	AUGUSTUS	CDS	11759645	11760268	0.82	-	0	transcript_id "Ledus.S3G146600.t1"; gene_id "Ledus.S3G146600"
Ledus.S3	AUGUSTUS	exon	11759645	11760268	.	-	.	transcript_id "Ledus.S3G146600.t1"; gene_id "Ledus.S3G146600"
Ledus.S3	AUGUSTUS	start_codon	11760266	11760268	.	-	0	transcript_id "Ledus.S3G146600.t1"; gene_id "Ledus.S3G146600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2633.t1 is derived from g66.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	950927	952207	.	-	.	Ledus.S1G005400
Ledus.S1	AUGUSTUS	transcript	950927	952207	.	-	.	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	stop_codon	950924	950926	.	-	0	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	CDS	950927	951268	1	-	0	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	exon	950927	951268	.	-	.	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	intron	951269	951358	.	-	.	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	CDS	951359	951628	1	-	0	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	exon	951359	951628	.	-	.	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	intron	951629	951703	.	-	.	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	CDS	951704	951907	1	-	0	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	exon	951704	951907	.	-	.	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	intron	951908	951994	.	-	.	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	CDS	951995	952207	1	-	0	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	exon	951995	952207	.	-	.	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
Ledus.S1	AUGUSTUS	start_codon	952205	952207	.	-	0	transcript_id "Ledus.S1G005400.t1"; gene_id "Ledus.S1G005400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10007.t1 is derived from g11037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11818017	11824532	.	-	.	Ledus.S3G148400
Ledus.S3	AUGUSTUS	transcript	11818017	11824532	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	stop_codon	11818014	11818016	.	-	0	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	CDS	11818017	11821741	1	-	2	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	exon	11818017	11821741	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	intron	11821742	11822718	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	CDS	11822719	11822833	1	-	0	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	exon	11822719	11822833	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	intron	11822834	11822933	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	CDS	11822934	11823096	0.74	-	1	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	exon	11822934	11823096	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	intron	11823097	11823161	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	CDS	11823162	11823181	0.74	-	0	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	exon	11823162	11823181	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	intron	11823182	11823659	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	CDS	11823660	11823743	1	-	0	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	exon	11823660	11823743	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	intron	11823744	11823869	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	CDS	11823870	11823986	1	-	0	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	exon	11823870	11823986	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	intron	11823987	11824074	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	CDS	11824075	11824170	1	-	0	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	exon	11824075	11824170	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	intron	11824171	11824249	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	CDS	11824250	11824345	1	-	0	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	exon	11824250	11824345	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	intron	11824346	11824433	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	CDS	11824434	11824532	0.31	-	0	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	exon	11824434	11824532	.	-	.	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
Ledus.S3	AUGUSTUS	start_codon	11824530	11824532	.	-	0	transcript_id "Ledus.S3G148400.t1"; gene_id "Ledus.S3G148400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8733.t1 is derived from g9763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1676562	1678149	.	+	.	Ledus.S3G021000
Ledus.S3	AUGUSTUS	transcript	1676562	1678149	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	start_codon	1676562	1676564	.	+	0	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	CDS	1676562	1677076	0.55	+	0	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	exon	1676562	1677076	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	intron	1677077	1677173	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	CDS	1677174	1677216	1	+	1	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	exon	1677174	1677216	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	intron	1677217	1677313	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	CDS	1677314	1677370	1	+	0	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	exon	1677314	1677370	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	intron	1677371	1677440	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	CDS	1677441	1677555	1	+	0	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	exon	1677441	1677555	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	intron	1677556	1677640	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	CDS	1677641	1677758	1	+	2	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	exon	1677641	1677758	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	intron	1677759	1677845	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	CDS	1677846	1677945	1	+	1	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	exon	1677846	1677945	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	intron	1677946	1678041	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	CDS	1678042	1678149	1	+	0	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	exon	1678042	1678149	.	+	.	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
Ledus.S3	AUGUSTUS	stop_codon	1678150	1678152	.	+	0	transcript_id "Ledus.S3G021000.t1"; gene_id "Ledus.S3G021000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2721.t1 is derived from g154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2525109	2525794	.	-	.	Ledus.S1G014200
Ledus.S1	AUGUSTUS	transcript	2525109	2525794	.	-	.	transcript_id "Ledus.S1G014200.t1"; gene_id "Ledus.S1G014200"
Ledus.S1	AUGUSTUS	stop_codon	2525106	2525108	.	-	0	transcript_id "Ledus.S1G014200.t1"; gene_id "Ledus.S1G014200"
Ledus.S1	AUGUSTUS	CDS	2525109	2525499	0.8	-	1	transcript_id "Ledus.S1G014200.t1"; gene_id "Ledus.S1G014200"
Ledus.S1	AUGUSTUS	exon	2525109	2525499	.	-	.	transcript_id "Ledus.S1G014200.t1"; gene_id "Ledus.S1G014200"
Ledus.S1	AUGUSTUS	intron	2525500	2525753	.	-	.	transcript_id "Ledus.S1G014200.t1"; gene_id "Ledus.S1G014200"
Ledus.S1	AUGUSTUS	CDS	2525754	2525794	0.93	-	0	transcript_id "Ledus.S1G014200.t1"; gene_id "Ledus.S1G014200"
Ledus.S1	AUGUSTUS	exon	2525754	2525794	.	-	.	transcript_id "Ledus.S1G014200.t1"; gene_id "Ledus.S1G014200"
Ledus.S1	AUGUSTUS	start_codon	2525792	2525794	.	-	0	transcript_id "Ledus.S1G014200.t1"; gene_id "Ledus.S1G014200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11097.t1 is derived from g4715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1776845	1778481	.	-	.	Ledus.S4G025300
Ledus.S4	AUGUSTUS	transcript	1776845	1778481	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	stop_codon	1776842	1776844	.	-	0	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	CDS	1776845	1776970	1	-	0	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	exon	1776845	1776970	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	intron	1776971	1777114	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	CDS	1777115	1777222	1	-	0	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	exon	1777115	1777222	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	intron	1777223	1777390	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	CDS	1777391	1777503	1	-	2	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	exon	1777391	1777503	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	intron	1777504	1777660	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	CDS	1777661	1777774	1	-	2	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	exon	1777661	1777774	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	intron	1777775	1777860	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	CDS	1777861	1777939	1	-	0	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	exon	1777861	1777939	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	intron	1777940	1778014	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	CDS	1778015	1778090	1	-	1	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	exon	1778015	1778090	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	intron	1778091	1778188	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	CDS	1778189	1778306	1	-	2	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	exon	1778189	1778306	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	intron	1778307	1778384	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	CDS	1778385	1778481	0.53	-	0	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	exon	1778385	1778481	.	-	.	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
Ledus.S4	AUGUSTUS	start_codon	1778479	1778481	.	-	0	transcript_id "Ledus.S4G025300.t1"; gene_id "Ledus.S4G025300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3392.t1 is derived from g827.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8031829	8034627	.	-	.	Ledus.S1G081300
Ledus.S1	AUGUSTUS	transcript	8031829	8034627	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	stop_codon	8031826	8031828	.	-	0	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	CDS	8031829	8031909	0.97	-	0	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	exon	8031829	8031909	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	intron	8031910	8032030	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	CDS	8032031	8032132	0.99	-	0	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	exon	8032031	8032132	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	intron	8032133	8032209	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	CDS	8032210	8032327	0.99	-	1	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	exon	8032210	8032327	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	intron	8032328	8032440	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	CDS	8032441	8032604	0.74	-	0	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	exon	8032441	8032604	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	intron	8032605	8032705	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	CDS	8032706	8032875	0.75	-	2	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	exon	8032706	8032875	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	intron	8032876	8033054	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	CDS	8033055	8033193	1	-	0	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	exon	8033055	8033193	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	intron	8033194	8033323	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	CDS	8033324	8033405	1	-	1	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	exon	8033324	8033405	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	intron	8033406	8033612	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	CDS	8033613	8033697	0.99	-	2	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	exon	8033613	8033697	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	intron	8033698	8033790	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	CDS	8033791	8033926	0.62	-	0	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	exon	8033791	8033926	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	intron	8033927	8034010	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	CDS	8034011	8034061	1	-	0	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	exon	8034011	8034061	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	intron	8034062	8034375	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	CDS	8034376	8034627	0.9	-	0	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	exon	8034376	8034627	.	-	.	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
Ledus.S1	AUGUSTUS	start_codon	8034625	8034627	.	-	0	transcript_id "Ledus.S1G081300.t1"; gene_id "Ledus.S1G081300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5055.t1 is derived from g2494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21329848	21331374	.	-	.	Ledus.S1G247600
Ledus.S1	AUGUSTUS	transcript	21329848	21331374	.	-	.	transcript_id "Ledus.S1G247600.t1"; gene_id "Ledus.S1G247600"
Ledus.S1	AUGUSTUS	stop_codon	21329845	21329847	.	-	0	transcript_id "Ledus.S1G247600.t1"; gene_id "Ledus.S1G247600"
Ledus.S1	AUGUSTUS	CDS	21329848	21331374	0.61	-	0	transcript_id "Ledus.S1G247600.t1"; gene_id "Ledus.S1G247600"
Ledus.S1	AUGUSTUS	exon	21329848	21331374	.	-	.	transcript_id "Ledus.S1G247600.t1"; gene_id "Ledus.S1G247600"
Ledus.S1	AUGUSTUS	start_codon	21331372	21331374	.	-	0	transcript_id "Ledus.S1G247600.t1"; gene_id "Ledus.S1G247600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg425.t1 is derived from g7286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2397444	2397750	.	-	.	Ledus.S2G030700
Ledus.S2	AUGUSTUS	transcript	2397444	2397750	.	-	.	transcript_id "Ledus.S2G030700.t1"; gene_id "Ledus.S2G030700"
Ledus.S2	AUGUSTUS	stop_codon	2397441	2397443	.	-	0	transcript_id "Ledus.S2G030700.t1"; gene_id "Ledus.S2G030700"
Ledus.S2	AUGUSTUS	CDS	2397444	2397488	0.99	-	0	transcript_id "Ledus.S2G030700.t1"; gene_id "Ledus.S2G030700"
Ledus.S2	AUGUSTUS	exon	2397444	2397488	.	-	.	transcript_id "Ledus.S2G030700.t1"; gene_id "Ledus.S2G030700"
Ledus.S2	AUGUSTUS	intron	2397489	2397573	.	-	.	transcript_id "Ledus.S2G030700.t1"; gene_id "Ledus.S2G030700"
Ledus.S2	AUGUSTUS	CDS	2397574	2397750	0.67	-	0	transcript_id "Ledus.S2G030700.t1"; gene_id "Ledus.S2G030700"
Ledus.S2	AUGUSTUS	exon	2397574	2397750	.	-	.	transcript_id "Ledus.S2G030700.t1"; gene_id "Ledus.S2G030700"
Ledus.S2	AUGUSTUS	start_codon	2397748	2397750	.	-	0	transcript_id "Ledus.S2G030700.t1"; gene_id "Ledus.S2G030700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10072.t1 is derived from g11102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12505323	12507406	.	-	.	Ledus.S3G154900
Ledus.S3	AUGUSTUS	transcript	12505323	12507406	.	-	.	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	stop_codon	12505320	12505322	.	-	0	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	CDS	12505323	12505547	0.97	-	0	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	exon	12505323	12505547	.	-	.	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	intron	12505548	12505629	.	-	.	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	CDS	12505630	12505875	1	-	0	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	exon	12505630	12505875	.	-	.	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	intron	12505876	12505974	.	-	.	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	CDS	12505975	12506108	1	-	2	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	exon	12505975	12506108	.	-	.	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	intron	12506109	12506181	.	-	.	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	CDS	12506182	12506260	1	-	0	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	exon	12506182	12506260	.	-	.	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	intron	12506261	12506362	.	-	.	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	CDS	12506363	12507406	0.85	-	0	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	exon	12506363	12507406	.	-	.	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
Ledus.S3	AUGUSTUS	start_codon	12507404	12507406	.	-	0	transcript_id "Ledus.S3G154900.t1"; gene_id "Ledus.S3G154900"
# This transcript jg6401.t2 is derived from g3844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6402.t1 is derived from g3845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31056231	31057601	.	+	.	Ledus.S1G382300
Ledus.S1	AUGUSTUS	transcript	31056231	31057601	.	+	.	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	start_codon	31056231	31056233	.	+	0	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	CDS	31056231	31056483	0.83	+	0	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	exon	31056231	31056483	.	+	.	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	intron	31056484	31056583	.	+	.	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	CDS	31056584	31056725	0.34	+	2	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	exon	31056584	31056725	.	+	.	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	intron	31056726	31056840	.	+	.	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	CDS	31056841	31057075	0.75	+	1	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	exon	31056841	31057075	.	+	.	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	intron	31057076	31057153	.	+	.	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	CDS	31057154	31057244	0.31	+	0	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	exon	31057154	31057244	.	+	.	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	intron	31057245	31057320	.	+	.	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	CDS	31057321	31057601	0.18	+	2	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	exon	31057321	31057601	.	+	.	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
Ledus.S1	AUGUSTUS	stop_codon	31057602	31057604	.	+	0	transcript_id "Ledus.S1G382300.t1"; gene_id "Ledus.S1G382300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10306.t1 is derived from g11336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14167180	14168580	.	-	.	Ledus.S3G178300
Ledus.S3	AUGUSTUS	transcript	14167180	14168580	.	-	.	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	stop_codon	14167177	14167179	.	-	0	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	CDS	14167180	14167401	0.59	-	0	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	exon	14167180	14167401	.	-	.	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	intron	14167402	14167497	.	-	.	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	CDS	14167498	14167545	1	-	0	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	exon	14167498	14167545	.	-	.	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	intron	14167546	14167642	.	-	.	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	CDS	14167643	14167879	1	-	0	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	exon	14167643	14167879	.	-	.	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	intron	14167880	14167982	.	-	.	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	CDS	14167983	14168019	1	-	1	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	exon	14167983	14168019	.	-	.	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	intron	14168020	14168278	.	-	.	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	CDS	14168279	14168580	0.77	-	0	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	exon	14168279	14168580	.	-	.	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
Ledus.S3	AUGUSTUS	start_codon	14168578	14168580	.	-	0	transcript_id "Ledus.S3G178300.t1"; gene_id "Ledus.S3G178300"
# This transcript jg7477.t2 is derived from g12148.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7478.t1 is derived from g12149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3051493	3052797	.	+	.	Ledus.S5G025600
Ledus.S5	AUGUSTUS	transcript	3051493	3052797	.	+	.	transcript_id "Ledus.S5G025600.t1"; gene_id "Ledus.S5G025600"
Ledus.S5	AUGUSTUS	start_codon	3051493	3051495	.	+	0	transcript_id "Ledus.S5G025600.t1"; gene_id "Ledus.S5G025600"
Ledus.S5	AUGUSTUS	CDS	3051493	3052797	0.95	+	0	transcript_id "Ledus.S5G025600.t1"; gene_id "Ledus.S5G025600"
Ledus.S5	AUGUSTUS	exon	3051493	3052797	.	+	.	transcript_id "Ledus.S5G025600.t1"; gene_id "Ledus.S5G025600"
Ledus.S5	AUGUSTUS	stop_codon	3052798	3052800	.	+	0	transcript_id "Ledus.S5G025600.t1"; gene_id "Ledus.S5G025600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9438.t1 is derived from g10468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6746775	6747464	.	+	.	Ledus.S3G091500
Ledus.S3	AUGUSTUS	transcript	6746775	6747464	.	+	.	transcript_id "Ledus.S3G091500.t1"; gene_id "Ledus.S3G091500"
Ledus.S3	AUGUSTUS	start_codon	6746775	6746777	.	+	0	transcript_id "Ledus.S3G091500.t1"; gene_id "Ledus.S3G091500"
Ledus.S3	AUGUSTUS	CDS	6746775	6747464	0.82	+	0	transcript_id "Ledus.S3G091500.t1"; gene_id "Ledus.S3G091500"
Ledus.S3	AUGUSTUS	exon	6746775	6747464	.	+	.	transcript_id "Ledus.S3G091500.t1"; gene_id "Ledus.S3G091500"
Ledus.S3	AUGUSTUS	stop_codon	6747465	6747467	.	+	0	transcript_id "Ledus.S3G091500.t1"; gene_id "Ledus.S3G091500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3507.t1 is derived from g942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8909774	8911620	.	-	.	Ledus.S1G092800
Ledus.S1	AUGUSTUS	transcript	8909774	8911620	.	-	.	transcript_id "Ledus.S1G092800.t1"; gene_id "Ledus.S1G092800"
Ledus.S1	AUGUSTUS	stop_codon	8909771	8909773	.	-	0	transcript_id "Ledus.S1G092800.t1"; gene_id "Ledus.S1G092800"
Ledus.S1	AUGUSTUS	CDS	8909774	8910230	1	-	1	transcript_id "Ledus.S1G092800.t1"; gene_id "Ledus.S1G092800"
Ledus.S1	AUGUSTUS	exon	8909774	8910230	.	-	.	transcript_id "Ledus.S1G092800.t1"; gene_id "Ledus.S1G092800"
Ledus.S1	AUGUSTUS	intron	8910231	8910316	.	-	.	transcript_id "Ledus.S1G092800.t1"; gene_id "Ledus.S1G092800"
Ledus.S1	AUGUSTUS	CDS	8910317	8911620	0.84	-	0	transcript_id "Ledus.S1G092800.t1"; gene_id "Ledus.S1G092800"
Ledus.S1	AUGUSTUS	exon	8910317	8911620	.	-	.	transcript_id "Ledus.S1G092800.t1"; gene_id "Ledus.S1G092800"
Ledus.S1	AUGUSTUS	start_codon	8911618	8911620	.	-	0	transcript_id "Ledus.S1G092800.t1"; gene_id "Ledus.S1G092800"
# This transcript jg912.t2 is derived from g7773.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg913.t1 is derived from g7774.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6157649	6158136	.	-	.	Ledus.S2G079500
Ledus.S2	AUGUSTUS	transcript	6157649	6158136	.	-	.	transcript_id "Ledus.S2G079500.t1"; gene_id "Ledus.S2G079500"
Ledus.S2	AUGUSTUS	stop_codon	6157646	6157648	.	-	0	transcript_id "Ledus.S2G079500.t1"; gene_id "Ledus.S2G079500"
Ledus.S2	AUGUSTUS	CDS	6157649	6157687	0.85	-	0	transcript_id "Ledus.S2G079500.t1"; gene_id "Ledus.S2G079500"
Ledus.S2	AUGUSTUS	exon	6157649	6157687	.	-	.	transcript_id "Ledus.S2G079500.t1"; gene_id "Ledus.S2G079500"
Ledus.S2	AUGUSTUS	intron	6157688	6157819	.	-	.	transcript_id "Ledus.S2G079500.t1"; gene_id "Ledus.S2G079500"
Ledus.S2	AUGUSTUS	CDS	6157820	6158065	0.99	-	0	transcript_id "Ledus.S2G079500.t1"; gene_id "Ledus.S2G079500"
Ledus.S2	AUGUSTUS	exon	6157820	6158065	.	-	.	transcript_id "Ledus.S2G079500.t1"; gene_id "Ledus.S2G079500"
Ledus.S2	AUGUSTUS	intron	6158066	6158133	.	-	.	transcript_id "Ledus.S2G079500.t1"; gene_id "Ledus.S2G079500"
Ledus.S2	AUGUSTUS	CDS	6158134	6158136	0.81	-	0	transcript_id "Ledus.S2G079500.t1"; gene_id "Ledus.S2G079500"
Ledus.S2	AUGUSTUS	exon	6158134	6158136	.	-	.	transcript_id "Ledus.S2G079500.t1"; gene_id "Ledus.S2G079500"
Ledus.S2	AUGUSTUS	start_codon	6158134	6158136	.	-	0	transcript_id "Ledus.S2G079500.t1"; gene_id "Ledus.S2G079500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3346.t1 is derived from g781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7620137	7620346	.	-	.	Ledus.S1G076700
Ledus.S1	AUGUSTUS	transcript	7620137	7620346	.	-	.	transcript_id "Ledus.S1G076700.t1"; gene_id "Ledus.S1G076700"
Ledus.S1	AUGUSTUS	stop_codon	7620134	7620136	.	-	0	transcript_id "Ledus.S1G076700.t1"; gene_id "Ledus.S1G076700"
Ledus.S1	AUGUSTUS	CDS	7620137	7620346	0.68	-	0	transcript_id "Ledus.S1G076700.t1"; gene_id "Ledus.S1G076700"
Ledus.S1	AUGUSTUS	exon	7620137	7620346	.	-	.	transcript_id "Ledus.S1G076700.t1"; gene_id "Ledus.S1G076700"
Ledus.S1	AUGUSTUS	start_codon	7620344	7620346	.	-	0	transcript_id "Ledus.S1G076700.t1"; gene_id "Ledus.S1G076700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11423.t1 is derived from g5041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4202968	4204023	.	+	.	Ledus.S4G057900
Ledus.S4	AUGUSTUS	transcript	4202968	4204023	.	+	.	transcript_id "Ledus.S4G057900.t1"; gene_id "Ledus.S4G057900"
Ledus.S4	AUGUSTUS	start_codon	4202968	4202970	.	+	0	transcript_id "Ledus.S4G057900.t1"; gene_id "Ledus.S4G057900"
Ledus.S4	AUGUSTUS	CDS	4202968	4204023	0.99	+	0	transcript_id "Ledus.S4G057900.t1"; gene_id "Ledus.S4G057900"
Ledus.S4	AUGUSTUS	exon	4202968	4204023	.	+	.	transcript_id "Ledus.S4G057900.t1"; gene_id "Ledus.S4G057900"
Ledus.S4	AUGUSTUS	stop_codon	4204024	4204026	.	+	0	transcript_id "Ledus.S4G057900.t1"; gene_id "Ledus.S4G057900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg342.t1 is derived from g7203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1829460	1831977	.	-	.	Ledus.S2G022400
Ledus.S2	AUGUSTUS	transcript	1829460	1831977	.	-	.	transcript_id "Ledus.S2G022400.t1"; gene_id "Ledus.S2G022400"
Ledus.S2	AUGUSTUS	stop_codon	1829457	1829459	.	-	0	transcript_id "Ledus.S2G022400.t1"; gene_id "Ledus.S2G022400"
Ledus.S2	AUGUSTUS	CDS	1829460	1831793	1	-	0	transcript_id "Ledus.S2G022400.t1"; gene_id "Ledus.S2G022400"
Ledus.S2	AUGUSTUS	exon	1829460	1831793	.	-	.	transcript_id "Ledus.S2G022400.t1"; gene_id "Ledus.S2G022400"
Ledus.S2	AUGUSTUS	intron	1831794	1831938	.	-	.	transcript_id "Ledus.S2G022400.t1"; gene_id "Ledus.S2G022400"
Ledus.S2	AUGUSTUS	CDS	1831939	1831977	0.99	-	0	transcript_id "Ledus.S2G022400.t1"; gene_id "Ledus.S2G022400"
Ledus.S2	AUGUSTUS	exon	1831939	1831977	.	-	.	transcript_id "Ledus.S2G022400.t1"; gene_id "Ledus.S2G022400"
Ledus.S2	AUGUSTUS	start_codon	1831975	1831977	.	-	0	transcript_id "Ledus.S2G022400.t1"; gene_id "Ledus.S2G022400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10368.t1 is derived from g11398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14461409	14461675	.	-	.	Ledus.S3G184500
Ledus.S3	AUGUSTUS	transcript	14461409	14461675	.	-	.	transcript_id "Ledus.S3G184500.t1"; gene_id "Ledus.S3G184500"
Ledus.S3	AUGUSTUS	stop_codon	14461406	14461408	.	-	0	transcript_id "Ledus.S3G184500.t1"; gene_id "Ledus.S3G184500"
Ledus.S3	AUGUSTUS	CDS	14461409	14461675	0.93	-	0	transcript_id "Ledus.S3G184500.t1"; gene_id "Ledus.S3G184500"
Ledus.S3	AUGUSTUS	exon	14461409	14461675	.	-	.	transcript_id "Ledus.S3G184500.t1"; gene_id "Ledus.S3G184500"
Ledus.S3	AUGUSTUS	start_codon	14461673	14461675	.	-	0	transcript_id "Ledus.S3G184500.t1"; gene_id "Ledus.S3G184500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5418.t1 is derived from g2857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24048363	24049454	.	-	.	Ledus.S1G283900
Ledus.S1	AUGUSTUS	transcript	24048363	24049454	.	-	.	transcript_id "Ledus.S1G283900.t1"; gene_id "Ledus.S1G283900"
Ledus.S1	AUGUSTUS	stop_codon	24048360	24048362	.	-	0	transcript_id "Ledus.S1G283900.t1"; gene_id "Ledus.S1G283900"
Ledus.S1	AUGUSTUS	CDS	24048363	24048530	1	-	0	transcript_id "Ledus.S1G283900.t1"; gene_id "Ledus.S1G283900"
Ledus.S1	AUGUSTUS	exon	24048363	24048530	.	-	.	transcript_id "Ledus.S1G283900.t1"; gene_id "Ledus.S1G283900"
Ledus.S1	AUGUSTUS	intron	24048531	24048620	.	-	.	transcript_id "Ledus.S1G283900.t1"; gene_id "Ledus.S1G283900"
Ledus.S1	AUGUSTUS	CDS	24048621	24049006	1	-	2	transcript_id "Ledus.S1G283900.t1"; gene_id "Ledus.S1G283900"
Ledus.S1	AUGUSTUS	exon	24048621	24049006	.	-	.	transcript_id "Ledus.S1G283900.t1"; gene_id "Ledus.S1G283900"
Ledus.S1	AUGUSTUS	intron	24049007	24049078	.	-	.	transcript_id "Ledus.S1G283900.t1"; gene_id "Ledus.S1G283900"
Ledus.S1	AUGUSTUS	CDS	24049079	24049454	1	-	0	transcript_id "Ledus.S1G283900.t1"; gene_id "Ledus.S1G283900"
Ledus.S1	AUGUSTUS	exon	24049079	24049454	.	-	.	transcript_id "Ledus.S1G283900.t1"; gene_id "Ledus.S1G283900"
Ledus.S1	AUGUSTUS	start_codon	24049452	24049454	.	-	0	transcript_id "Ledus.S1G283900.t1"; gene_id "Ledus.S1G283900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5168.t1 is derived from g2607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22137812	22138807	.	-	.	Ledus.S1G258900
Ledus.S1	AUGUSTUS	transcript	22137812	22138807	.	-	.	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	stop_codon	22137809	22137811	.	-	0	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	CDS	22137812	22137936	1	-	2	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	exon	22137812	22137936	.	-	.	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	intron	22137937	22138019	.	-	.	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	CDS	22138020	22138269	0.85	-	0	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	exon	22138020	22138269	.	-	.	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	intron	22138270	22138388	.	-	.	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	CDS	22138389	22138457	1	-	0	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	exon	22138389	22138457	.	-	.	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	intron	22138458	22138555	.	-	.	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	CDS	22138556	22138807	1	-	0	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	exon	22138556	22138807	.	-	.	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
Ledus.S1	AUGUSTUS	start_codon	22138805	22138807	.	-	0	transcript_id "Ledus.S1G258900.t1"; gene_id "Ledus.S1G258900"
# This transcript jg11268.t2 is derived from g4886.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11268.t3 is derived from g4886.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11269.t1 is derived from g4887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3092007	3094166	.	+	.	Ledus.S4G042500
Ledus.S4	AUGUSTUS	transcript	3092007	3094166	.	+	.	transcript_id "Ledus.S4G042500.t1"; gene_id "Ledus.S4G042500"
Ledus.S4	AUGUSTUS	start_codon	3092007	3092009	.	+	0	transcript_id "Ledus.S4G042500.t1"; gene_id "Ledus.S4G042500"
Ledus.S4	AUGUSTUS	CDS	3092007	3092846	0.95	+	0	transcript_id "Ledus.S4G042500.t1"; gene_id "Ledus.S4G042500"
Ledus.S4	AUGUSTUS	exon	3092007	3092846	.	+	.	transcript_id "Ledus.S4G042500.t1"; gene_id "Ledus.S4G042500"
Ledus.S4	AUGUSTUS	intron	3092847	3092918	.	+	.	transcript_id "Ledus.S4G042500.t1"; gene_id "Ledus.S4G042500"
Ledus.S4	AUGUSTUS	CDS	3092919	3094166	0.94	+	0	transcript_id "Ledus.S4G042500.t1"; gene_id "Ledus.S4G042500"
Ledus.S4	AUGUSTUS	exon	3092919	3094166	.	+	.	transcript_id "Ledus.S4G042500.t1"; gene_id "Ledus.S4G042500"
Ledus.S4	AUGUSTUS	stop_codon	3094167	3094169	.	+	0	transcript_id "Ledus.S4G042500.t1"; gene_id "Ledus.S4G042500"
# This transcript jg11228.t1 is derived from g4846.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2820783	2821549	.	+	.	Ledus.S4G038400
Ledus.S4	AUGUSTUS	transcript	2820783	2821549	.	+	.	transcript_id "Ledus.S4G038400.t1"; gene_id "Ledus.S4G038400"
Ledus.S4	AUGUSTUS	start_codon	2820783	2820785	.	+	0	transcript_id "Ledus.S4G038400.t1"; gene_id "Ledus.S4G038400"
Ledus.S4	AUGUSTUS	CDS	2820783	2820905	0.42	+	0	transcript_id "Ledus.S4G038400.t1"; gene_id "Ledus.S4G038400"
Ledus.S4	AUGUSTUS	exon	2820783	2820905	.	+	.	transcript_id "Ledus.S4G038400.t1"; gene_id "Ledus.S4G038400"
Ledus.S4	AUGUSTUS	intron	2820906	2820994	.	+	.	transcript_id "Ledus.S4G038400.t1"; gene_id "Ledus.S4G038400"
Ledus.S4	AUGUSTUS	CDS	2820995	2821225	0.96	+	0	transcript_id "Ledus.S4G038400.t1"; gene_id "Ledus.S4G038400"
Ledus.S4	AUGUSTUS	exon	2820995	2821225	.	+	.	transcript_id "Ledus.S4G038400.t1"; gene_id "Ledus.S4G038400"
Ledus.S4	AUGUSTUS	intron	2821226	2821306	.	+	.	transcript_id "Ledus.S4G038400.t1"; gene_id "Ledus.S4G038400"
Ledus.S4	AUGUSTUS	CDS	2821307	2821549	0.97	+	0	transcript_id "Ledus.S4G038400.t1"; gene_id "Ledus.S4G038400"
Ledus.S4	AUGUSTUS	exon	2821307	2821549	.	+	.	transcript_id "Ledus.S4G038400.t1"; gene_id "Ledus.S4G038400"
Ledus.S4	AUGUSTUS	stop_codon	2821550	2821552	.	+	0	transcript_id "Ledus.S4G038400.t1"; gene_id "Ledus.S4G038400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8569.t1 is derived from g9599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	217239	219695	.	+	.	Ledus.S3G004600
Ledus.S3	AUGUSTUS	transcript	217239	219695	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	start_codon	217239	217241	.	+	0	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	CDS	217239	218196	1	+	0	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	exon	217239	218196	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	intron	218197	218284	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	CDS	218285	218428	1	+	2	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	exon	218285	218428	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	intron	218429	218506	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	CDS	218507	218659	1	+	2	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	exon	218507	218659	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	intron	218660	218751	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	CDS	218752	218867	1	+	2	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	exon	218752	218867	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	intron	218868	218948	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	CDS	218949	219116	1	+	0	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	exon	218949	219116	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	intron	219117	219262	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	CDS	219263	219490	1	+	0	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	exon	219263	219490	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	intron	219491	219575	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	CDS	219576	219695	1	+	0	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	exon	219576	219695	.	+	.	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
Ledus.S3	AUGUSTUS	stop_codon	219696	219698	.	+	0	transcript_id "Ledus.S3G004600.t1"; gene_id "Ledus.S3G004600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2021.t1 is derived from g8884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14215291	14217090	.	+	.	Ledus.S2G190300
Ledus.S2	AUGUSTUS	transcript	14215291	14217090	.	+	.	transcript_id "Ledus.S2G190300.t1"; gene_id "Ledus.S2G190300"
Ledus.S2	AUGUSTUS	start_codon	14215291	14215293	.	+	0	transcript_id "Ledus.S2G190300.t1"; gene_id "Ledus.S2G190300"
Ledus.S2	AUGUSTUS	CDS	14215291	14217090	0.96	+	0	transcript_id "Ledus.S2G190300.t1"; gene_id "Ledus.S2G190300"
Ledus.S2	AUGUSTUS	exon	14215291	14217090	.	+	.	transcript_id "Ledus.S2G190300.t1"; gene_id "Ledus.S2G190300"
Ledus.S2	AUGUSTUS	stop_codon	14217091	14217093	.	+	0	transcript_id "Ledus.S2G190300.t1"; gene_id "Ledus.S2G190300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1346.t1 is derived from g8207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9361304	9362389	.	+	.	Ledus.S2G122800
Ledus.S2	AUGUSTUS	transcript	9361304	9362389	.	+	.	transcript_id "Ledus.S2G122800.t1"; gene_id "Ledus.S2G122800"
Ledus.S2	AUGUSTUS	start_codon	9361304	9361306	.	+	0	transcript_id "Ledus.S2G122800.t1"; gene_id "Ledus.S2G122800"
Ledus.S2	AUGUSTUS	CDS	9361304	9361410	0.01	+	0	transcript_id "Ledus.S2G122800.t1"; gene_id "Ledus.S2G122800"
Ledus.S2	AUGUSTUS	exon	9361304	9361410	.	+	.	transcript_id "Ledus.S2G122800.t1"; gene_id "Ledus.S2G122800"
Ledus.S2	AUGUSTUS	intron	9361411	9361858	.	+	.	transcript_id "Ledus.S2G122800.t1"; gene_id "Ledus.S2G122800"
Ledus.S2	AUGUSTUS	CDS	9361859	9361961	0.02	+	1	transcript_id "Ledus.S2G122800.t1"; gene_id "Ledus.S2G122800"
Ledus.S2	AUGUSTUS	exon	9361859	9361961	.	+	.	transcript_id "Ledus.S2G122800.t1"; gene_id "Ledus.S2G122800"
Ledus.S2	AUGUSTUS	intron	9361962	9362257	.	+	.	transcript_id "Ledus.S2G122800.t1"; gene_id "Ledus.S2G122800"
Ledus.S2	AUGUSTUS	CDS	9362258	9362389	0.02	+	0	transcript_id "Ledus.S2G122800.t1"; gene_id "Ledus.S2G122800"
Ledus.S2	AUGUSTUS	exon	9362258	9362389	.	+	.	transcript_id "Ledus.S2G122800.t1"; gene_id "Ledus.S2G122800"
Ledus.S2	AUGUSTUS	stop_codon	9362390	9362392	.	+	0	transcript_id "Ledus.S2G122800.t1"; gene_id "Ledus.S2G122800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12754.t1 is derived from g6376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14229294	14229668	.	-	.	Ledus.S4G191000
Ledus.S4	AUGUSTUS	transcript	14229294	14229668	.	-	.	transcript_id "Ledus.S4G191000.t1"; gene_id "Ledus.S4G191000"
Ledus.S4	AUGUSTUS	stop_codon	14229291	14229293	.	-	0	transcript_id "Ledus.S4G191000.t1"; gene_id "Ledus.S4G191000"
Ledus.S4	AUGUSTUS	CDS	14229294	14229668	0.75	-	0	transcript_id "Ledus.S4G191000.t1"; gene_id "Ledus.S4G191000"
Ledus.S4	AUGUSTUS	exon	14229294	14229668	.	-	.	transcript_id "Ledus.S4G191000.t1"; gene_id "Ledus.S4G191000"
Ledus.S4	AUGUSTUS	start_codon	14229666	14229668	.	-	0	transcript_id "Ledus.S4G191000.t1"; gene_id "Ledus.S4G191000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12460.t1 is derived from g6081.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12098490	12101192	.	-	.	Ledus.S4G161600
Ledus.S4	AUGUSTUS	transcript	12098490	12101192	.	-	.	transcript_id "Ledus.S4G161600.t1"; gene_id "Ledus.S4G161600"
Ledus.S4	AUGUSTUS	stop_codon	12098487	12098489	.	-	0	transcript_id "Ledus.S4G161600.t1"; gene_id "Ledus.S4G161600"
Ledus.S4	AUGUSTUS	CDS	12098490	12101192	1	-	0	transcript_id "Ledus.S4G161600.t1"; gene_id "Ledus.S4G161600"
Ledus.S4	AUGUSTUS	exon	12098490	12101192	.	-	.	transcript_id "Ledus.S4G161600.t1"; gene_id "Ledus.S4G161600"
Ledus.S4	AUGUSTUS	start_codon	12101190	12101192	.	-	0	transcript_id "Ledus.S4G161600.t1"; gene_id "Ledus.S4G161600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7125.t1 is derived from g6656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1687194	1690459	.	-	.	Ledus.C7G018600
Ledus.C7	AUGUSTUS	transcript	1687194	1690459	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	stop_codon	1687191	1687193	.	-	0	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1687194	1687220	0.43	-	0	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1687194	1687220	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	intron	1687221	1687371	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1687372	1687379	0.69	-	2	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1687372	1687379	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	intron	1687380	1687615	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1687616	1687730	0.67	-	0	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1687616	1687730	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	intron	1687731	1687868	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1687869	1687994	1	-	0	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1687869	1687994	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	intron	1687995	1688126	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1688127	1688292	0.96	-	1	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1688127	1688292	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	intron	1688293	1688531	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1688532	1688613	1	-	2	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1688532	1688613	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	intron	1688614	1688708	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1688709	1688814	0.88	-	0	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1688709	1688814	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	intron	1688815	1688927	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1688928	1689029	1	-	0	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1688928	1689029	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	intron	1689030	1689228	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1689229	1689254	0.5	-	2	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1689229	1689254	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	intron	1689255	1689402	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1689403	1689583	0.63	-	0	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1689403	1689583	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	intron	1689584	1689686	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1689687	1689827	0.86	-	0	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1689687	1689827	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	intron	1689828	1690113	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1690114	1690148	0.82	-	2	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1690114	1690148	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	intron	1690149	1690353	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	CDS	1690354	1690459	0.48	-	0	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	exon	1690354	1690459	.	-	.	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
Ledus.C7	AUGUSTUS	start_codon	1690457	1690459	.	-	0	transcript_id "Ledus.C7G018600.t1"; gene_id "Ledus.C7G018600"
# This transcript jg5014.t2 is derived from g2452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5014.t3 is derived from g2452.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5014.t4 is derived from g2452.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5015.t1 is derived from g2453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21136208	21137528	.	-	.	Ledus.S1G243600
Ledus.S1	AUGUSTUS	transcript	21136208	21137528	.	-	.	transcript_id "Ledus.S1G243600.t1"; gene_id "Ledus.S1G243600"
Ledus.S1	AUGUSTUS	stop_codon	21136205	21136207	.	-	0	transcript_id "Ledus.S1G243600.t1"; gene_id "Ledus.S1G243600"
Ledus.S1	AUGUSTUS	CDS	21136208	21136302	0.42	-	2	transcript_id "Ledus.S1G243600.t1"; gene_id "Ledus.S1G243600"
Ledus.S1	AUGUSTUS	exon	21136208	21136302	.	-	.	transcript_id "Ledus.S1G243600.t1"; gene_id "Ledus.S1G243600"
Ledus.S1	AUGUSTUS	intron	21136303	21136942	.	-	.	transcript_id "Ledus.S1G243600.t1"; gene_id "Ledus.S1G243600"
Ledus.S1	AUGUSTUS	CDS	21136943	21137528	0.78	-	0	transcript_id "Ledus.S1G243600.t1"; gene_id "Ledus.S1G243600"
Ledus.S1	AUGUSTUS	exon	21136943	21137528	.	-	.	transcript_id "Ledus.S1G243600.t1"; gene_id "Ledus.S1G243600"
Ledus.S1	AUGUSTUS	start_codon	21137526	21137528	.	-	0	transcript_id "Ledus.S1G243600.t1"; gene_id "Ledus.S1G243600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9432.t1 is derived from g10462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6707042	6708192	.	-	.	Ledus.S3G090900
Ledus.S3	AUGUSTUS	transcript	6707042	6708192	.	-	.	transcript_id "Ledus.S3G090900.t1"; gene_id "Ledus.S3G090900"
Ledus.S3	AUGUSTUS	stop_codon	6707039	6707041	.	-	0	transcript_id "Ledus.S3G090900.t1"; gene_id "Ledus.S3G090900"
Ledus.S3	AUGUSTUS	CDS	6707042	6707389	0.62	-	0	transcript_id "Ledus.S3G090900.t1"; gene_id "Ledus.S3G090900"
Ledus.S3	AUGUSTUS	exon	6707042	6707389	.	-	.	transcript_id "Ledus.S3G090900.t1"; gene_id "Ledus.S3G090900"
Ledus.S3	AUGUSTUS	intron	6707390	6707581	.	-	.	transcript_id "Ledus.S3G090900.t1"; gene_id "Ledus.S3G090900"
Ledus.S3	AUGUSTUS	CDS	6707582	6707822	0.98	-	1	transcript_id "Ledus.S3G090900.t1"; gene_id "Ledus.S3G090900"
Ledus.S3	AUGUSTUS	exon	6707582	6707822	.	-	.	transcript_id "Ledus.S3G090900.t1"; gene_id "Ledus.S3G090900"
Ledus.S3	AUGUSTUS	intron	6707823	6708067	.	-	.	transcript_id "Ledus.S3G090900.t1"; gene_id "Ledus.S3G090900"
Ledus.S3	AUGUSTUS	CDS	6708068	6708192	0.72	-	0	transcript_id "Ledus.S3G090900.t1"; gene_id "Ledus.S3G090900"
Ledus.S3	AUGUSTUS	exon	6708068	6708192	.	-	.	transcript_id "Ledus.S3G090900.t1"; gene_id "Ledus.S3G090900"
Ledus.S3	AUGUSTUS	start_codon	6708190	6708192	.	-	0	transcript_id "Ledus.S3G090900.t1"; gene_id "Ledus.S3G090900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2566.t1 is derived from g9429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19008046	19010435	.	-	.	Ledus.S2G244800
Ledus.S2	AUGUSTUS	transcript	19008046	19010435	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	stop_codon	19008043	19008045	.	-	0	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	CDS	19008046	19008147	0.97	-	0	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	exon	19008046	19008147	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	intron	19008148	19008267	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	CDS	19008268	19008378	0.64	-	0	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	exon	19008268	19008378	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	intron	19008379	19008641	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	CDS	19008642	19008725	1	-	0	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	exon	19008642	19008725	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	intron	19008726	19008811	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	CDS	19008812	19008864	1	-	2	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	exon	19008812	19008864	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	intron	19008865	19009234	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	CDS	19009235	19009319	1	-	0	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	exon	19009235	19009319	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	intron	19009320	19009456	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	CDS	19009457	19009552	1	-	0	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	exon	19009457	19009552	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	intron	19009553	19009673	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	CDS	19009674	19009772	1	-	0	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	exon	19009674	19009772	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	intron	19009773	19009853	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	CDS	19009854	19009910	1	-	0	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	exon	19009854	19009910	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	intron	19009911	19010025	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	CDS	19010026	19010175	1	-	0	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	exon	19010026	19010175	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	intron	19010176	19010273	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	CDS	19010274	19010435	0.52	-	0	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	exon	19010274	19010435	.	-	.	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
Ledus.S2	AUGUSTUS	start_codon	19010433	19010435	.	-	0	transcript_id "Ledus.S2G244800.t1"; gene_id "Ledus.S2G244800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4501.t1 is derived from g1937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17392255	17394523	.	-	.	Ledus.S1G192200
Ledus.S1	AUGUSTUS	transcript	17392255	17394523	.	-	.	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	stop_codon	17392252	17392254	.	-	0	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	CDS	17392255	17393355	0.99	-	0	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	exon	17392255	17393355	.	-	.	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	intron	17393356	17393433	.	-	.	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	CDS	17393434	17393886	1	-	0	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	exon	17393434	17393886	.	-	.	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	intron	17393887	17393966	.	-	.	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	CDS	17393967	17394083	1	-	0	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	exon	17393967	17394083	.	-	.	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	intron	17394084	17394250	.	-	.	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	CDS	17394251	17394523	0.77	-	0	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	exon	17394251	17394523	.	-	.	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
Ledus.S1	AUGUSTUS	start_codon	17394521	17394523	.	-	0	transcript_id "Ledus.S1G192200.t1"; gene_id "Ledus.S1G192200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7745.t1 is derived from g12416.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5978729	5983528	.	-	.	Ledus.S5G052300
Ledus.S5	AUGUSTUS	transcript	5978729	5983528	.	-	.	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	stop_codon	5978726	5978728	.	-	0	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	CDS	5978729	5982355	0.81	-	0	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	exon	5978729	5982355	.	-	.	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	intron	5982356	5982518	.	-	.	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	CDS	5982519	5982601	0.78	-	2	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	exon	5982519	5982601	.	-	.	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	intron	5982602	5982699	.	-	.	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	CDS	5982700	5982711	0.77	-	2	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	exon	5982700	5982711	.	-	.	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	intron	5982712	5983072	.	-	.	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	CDS	5983073	5983268	0.43	-	0	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	exon	5983073	5983268	.	-	.	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	intron	5983269	5983351	.	-	.	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	CDS	5983352	5983528	0.49	-	0	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	exon	5983352	5983528	.	-	.	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
Ledus.S5	AUGUSTUS	start_codon	5983526	5983528	.	-	0	transcript_id "Ledus.S5G052300.t1"; gene_id "Ledus.S5G052300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1110.t1 is derived from g7971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7587342	7590246	.	+	.	Ledus.S2G099200
Ledus.S2	AUGUSTUS	transcript	7587342	7590246	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	start_codon	7587342	7587344	.	+	0	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7587342	7587510	0.99	+	0	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7587342	7587510	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	intron	7587511	7587709	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7587710	7587804	1	+	2	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7587710	7587804	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	intron	7587805	7587887	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7587888	7588043	1	+	0	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7587888	7588043	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	intron	7588044	7588176	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7588177	7588287	1	+	0	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7588177	7588287	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	intron	7588288	7588458	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7588459	7588559	1	+	0	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7588459	7588559	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	intron	7588560	7588735	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7588736	7588873	1	+	1	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7588736	7588873	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	intron	7588874	7588982	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7588983	7589031	0.91	+	1	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7588983	7589031	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	intron	7589032	7589149	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7589150	7589215	0.97	+	0	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7589150	7589215	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	intron	7589216	7589365	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7589366	7589485	1	+	0	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7589366	7589485	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	intron	7589486	7589607	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7589608	7589732	0.99	+	0	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7589608	7589732	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	intron	7589733	7589801	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7589802	7589905	0.97	+	1	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7589802	7589905	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	intron	7589906	7589999	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7590000	7590127	0.68	+	2	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7590000	7590127	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	intron	7590128	7590237	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	CDS	7590238	7590246	0.57	+	0	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	exon	7590238	7590246	.	+	.	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
Ledus.S2	AUGUSTUS	stop_codon	7590247	7590249	.	+	0	transcript_id "Ledus.S2G099200.t1"; gene_id "Ledus.S2G099200"
# This transcript jg4351.t2 is derived from g1787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4352.t1 is derived from g1788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16539768	16540839	.	+	.	Ledus.S1G177300
Ledus.S1	AUGUSTUS	transcript	16539768	16540839	.	+	.	transcript_id "Ledus.S1G177300.t1"; gene_id "Ledus.S1G177300"
Ledus.S1	AUGUSTUS	start_codon	16539768	16539770	.	+	0	transcript_id "Ledus.S1G177300.t1"; gene_id "Ledus.S1G177300"
Ledus.S1	AUGUSTUS	CDS	16539768	16540136	1	+	0	transcript_id "Ledus.S1G177300.t1"; gene_id "Ledus.S1G177300"
Ledus.S1	AUGUSTUS	exon	16539768	16540136	.	+	.	transcript_id "Ledus.S1G177300.t1"; gene_id "Ledus.S1G177300"
Ledus.S1	AUGUSTUS	intron	16540137	16540275	.	+	.	transcript_id "Ledus.S1G177300.t1"; gene_id "Ledus.S1G177300"
Ledus.S1	AUGUSTUS	CDS	16540276	16540839	0.85	+	0	transcript_id "Ledus.S1G177300.t1"; gene_id "Ledus.S1G177300"
Ledus.S1	AUGUSTUS	exon	16540276	16540839	.	+	.	transcript_id "Ledus.S1G177300.t1"; gene_id "Ledus.S1G177300"
Ledus.S1	AUGUSTUS	stop_codon	16540840	16540842	.	+	0	transcript_id "Ledus.S1G177300.t1"; gene_id "Ledus.S1G177300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6142.t1 is derived from g3585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29231945	29234325	.	+	.	Ledus.S1G356300
Ledus.S1	AUGUSTUS	transcript	29231945	29234325	.	+	.	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	start_codon	29231945	29231947	.	+	0	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29231945	29232155	0.16	+	0	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29231945	29232155	.	+	.	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	intron	29232156	29232321	.	+	.	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29232322	29232377	1	+	2	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29232322	29232377	.	+	.	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	intron	29232378	29232606	.	+	.	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29232607	29232759	1	+	0	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29232607	29232759	.	+	.	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	intron	29232760	29232913	.	+	.	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29232914	29233501	1	+	0	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29232914	29233501	.	+	.	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	intron	29233502	29233634	.	+	.	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29233635	29233937	0.89	+	0	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29233635	29233937	.	+	.	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	intron	29233938	29234043	.	+	.	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29234044	29234325	0.76	+	0	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29234044	29234325	.	+	.	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	stop_codon	29234326	29234328	.	+	0	transcript_id "Ledus.S1G356300.t1"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	transcript	29232111	29234325	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	start_codon	29232111	29232113	.	+	0	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29232111	29232155	0.12	+	0	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29232111	29232155	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	intron	29232156	29232321	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29232322	29232377	0.25	+	0	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29232322	29232377	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	intron	29232378	29232460	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29232461	29232565	0.25	+	1	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29232461	29232565	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	intron	29232566	29232653	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29232654	29232759	0.64	+	1	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29232654	29232759	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	intron	29232760	29232913	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29232914	29233501	1	+	0	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29232914	29233501	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	intron	29233502	29233634	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29233635	29233937	0.88	+	0	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29233635	29233937	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	intron	29233938	29234043	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	CDS	29234044	29234325	0.8	+	0	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	exon	29234044	29234325	.	+	.	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
Ledus.S1	AUGUSTUS	stop_codon	29234326	29234328	.	+	0	transcript_id "Ledus.S1G356300.t2"; gene_id "Ledus.S1G356300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5202.t1 is derived from g2641.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22439551	22443096	.	-	.	Ledus.S1G262300
Ledus.S1	AUGUSTUS	transcript	22440129	22443096	.	-	.	transcript_id "Ledus.S1G262300.t1"; gene_id "Ledus.S1G262300"
Ledus.S1	AUGUSTUS	stop_codon	22440126	22440128	.	-	0	transcript_id "Ledus.S1G262300.t1"; gene_id "Ledus.S1G262300"
Ledus.S1	AUGUSTUS	CDS	22440129	22440131	0.71	-	0	transcript_id "Ledus.S1G262300.t1"; gene_id "Ledus.S1G262300"
Ledus.S1	AUGUSTUS	exon	22440129	22440131	.	-	.	transcript_id "Ledus.S1G262300.t1"; gene_id "Ledus.S1G262300"
Ledus.S1	AUGUSTUS	intron	22440132	22440225	.	-	.	transcript_id "Ledus.S1G262300.t1"; gene_id "Ledus.S1G262300"
Ledus.S1	AUGUSTUS	CDS	22440226	22443096	0.54	-	0	transcript_id "Ledus.S1G262300.t1"; gene_id "Ledus.S1G262300"
Ledus.S1	AUGUSTUS	exon	22440226	22443096	.	-	.	transcript_id "Ledus.S1G262300.t1"; gene_id "Ledus.S1G262300"
Ledus.S1	AUGUSTUS	start_codon	22443094	22443096	.	-	0	transcript_id "Ledus.S1G262300.t1"; gene_id "Ledus.S1G262300"
Ledus.S1	AUGUSTUS	transcript	22439551	22443096	.	-	.	transcript_id "Ledus.S1G262300.t2"; gene_id "Ledus.S1G262300"
Ledus.S1	AUGUSTUS	stop_codon	22439548	22439550	.	-	0	transcript_id "Ledus.S1G262300.t2"; gene_id "Ledus.S1G262300"
Ledus.S1	AUGUSTUS	CDS	22439551	22443096	0.99	-	0	transcript_id "Ledus.S1G262300.t2"; gene_id "Ledus.S1G262300"
Ledus.S1	AUGUSTUS	exon	22439551	22443096	.	-	.	transcript_id "Ledus.S1G262300.t2"; gene_id "Ledus.S1G262300"
Ledus.S1	AUGUSTUS	start_codon	22443094	22443096	.	-	0	transcript_id "Ledus.S1G262300.t2"; gene_id "Ledus.S1G262300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8587.t1 is derived from g9617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	446741	448418	.	+	.	Ledus.S3G006400
Ledus.S3	AUGUSTUS	transcript	446741	448418	.	+	.	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	start_codon	446741	446743	.	+	0	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	CDS	446741	446886	0.52	+	0	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	exon	446741	446886	.	+	.	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	intron	446887	446983	.	+	.	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	CDS	446984	447307	0.29	+	1	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	exon	446984	447307	.	+	.	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	intron	447308	447784	.	+	.	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	CDS	447785	447974	0.44	+	1	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	exon	447785	447974	.	+	.	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	intron	447975	448071	.	+	.	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	CDS	448072	448253	0.39	+	0	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	exon	448072	448253	.	+	.	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	intron	448254	448402	.	+	.	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	CDS	448403	448418	0.68	+	1	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	exon	448403	448418	.	+	.	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
Ledus.S3	AUGUSTUS	stop_codon	448419	448421	.	+	0	transcript_id "Ledus.S3G006400.t1"; gene_id "Ledus.S3G006400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11843.t1 is derived from g5462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7268128	7271881	.	-	.	Ledus.S4G099900
Ledus.S4	AUGUSTUS	transcript	7268128	7271881	.	-	.	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	stop_codon	7268125	7268127	.	-	0	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	CDS	7268128	7268913	1	-	0	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	exon	7268128	7268913	.	-	.	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	intron	7268914	7269007	.	-	.	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	CDS	7269008	7269158	1	-	1	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	exon	7269008	7269158	.	-	.	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	intron	7269159	7269252	.	-	.	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	CDS	7269253	7271240	0.98	-	0	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	exon	7269253	7271240	.	-	.	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	intron	7271241	7271356	.	-	.	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	CDS	7271357	7271881	0.96	-	0	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	exon	7271357	7271881	.	-	.	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
Ledus.S4	AUGUSTUS	start_codon	7271879	7271881	.	-	0	transcript_id "Ledus.S4G099900.t1"; gene_id "Ledus.S4G099900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8854.t1 is derived from g9884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2320409	2321845	.	-	.	Ledus.S3G033100
Ledus.S3	AUGUSTUS	transcript	2320409	2321845	.	-	.	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	stop_codon	2320406	2320408	.	-	0	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	CDS	2320409	2320470	0.89	-	2	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	exon	2320409	2320470	.	-	.	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	intron	2320471	2320700	.	-	.	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	CDS	2320701	2320785	1	-	0	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	exon	2320701	2320785	.	-	.	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	intron	2320786	2320897	.	-	.	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	CDS	2320898	2321092	0.99	-	0	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	exon	2320898	2321092	.	-	.	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	intron	2321093	2321195	.	-	.	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	CDS	2321196	2321402	0.99	-	0	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	exon	2321196	2321402	.	-	.	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	intron	2321403	2321487	.	-	.	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	CDS	2321488	2321680	1	-	1	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	exon	2321488	2321680	.	-	.	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	intron	2321681	2321762	.	-	.	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	CDS	2321763	2321845	0.85	-	0	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	exon	2321763	2321845	.	-	.	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
Ledus.S3	AUGUSTUS	start_codon	2321843	2321845	.	-	0	transcript_id "Ledus.S3G033100.t1"; gene_id "Ledus.S3G033100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4073.t1 is derived from g1509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14470603	14472966	.	+	.	Ledus.S1G149400
Ledus.S1	AUGUSTUS	transcript	14470603	14472966	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	start_codon	14470603	14470605	.	+	0	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	CDS	14470603	14470785	1	+	0	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	exon	14470603	14470785	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	intron	14470786	14471092	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	CDS	14471093	14471218	1	+	0	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	exon	14471093	14471218	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	intron	14471219	14471355	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	CDS	14471356	14471421	1	+	0	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	exon	14471356	14471421	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	intron	14471422	14471517	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	CDS	14471518	14471735	1	+	0	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	exon	14471518	14471735	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	intron	14471736	14471888	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	CDS	14471889	14471973	1	+	1	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	exon	14471889	14471973	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	intron	14471974	14472262	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	CDS	14472263	14472298	1	+	0	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	exon	14472263	14472298	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	intron	14472299	14472379	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	CDS	14472380	14472649	0.88	+	0	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	exon	14472380	14472649	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	intron	14472650	14472781	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	CDS	14472782	14472823	0.5	+	0	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	exon	14472782	14472823	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	intron	14472824	14472915	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	CDS	14472916	14472966	0.62	+	0	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	exon	14472916	14472966	.	+	.	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
Ledus.S1	AUGUSTUS	stop_codon	14472967	14472969	.	+	0	transcript_id "Ledus.S1G149400.t1"; gene_id "Ledus.S1G149400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11053.t1 is derived from g4671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1491509	1496169	.	+	.	Ledus.S4G020900
Ledus.S4	AUGUSTUS	transcript	1491509	1496169	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	start_codon	1491509	1491511	.	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1491509	1491533	0.96	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1491509	1491533	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1491534	1491655	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1491656	1491890	0.98	+	2	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1491656	1491890	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1491891	1491974	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1491975	1492056	1	+	1	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1491975	1492056	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492057	1492300	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1492301	1492353	1	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1492301	1492353	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492354	1492541	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1492542	1492596	0.65	+	1	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1492542	1492596	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492597	1492698	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1492699	1492837	0.65	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1492699	1492837	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492838	1492906	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1492907	1492961	1	+	2	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1492907	1492961	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492962	1493247	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1493248	1493473	0.95	+	1	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1493248	1493473	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1493474	1493691	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1493692	1493787	1	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1493692	1493787	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1493788	1493860	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1493861	1493980	1	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1493861	1493980	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1493981	1494097	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1494098	1494223	0.98	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1494098	1494223	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1494224	1494329	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1494330	1494485	0.96	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1494330	1494485	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1494486	1494573	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1494574	1494690	1	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1494574	1494690	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1494691	1494802	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1494803	1494928	0.99	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1494803	1494928	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1494929	1495050	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1495051	1495118	1	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1495051	1495118	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1495119	1495298	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1495299	1495434	1	+	1	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1495299	1495434	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1495435	1495636	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1495637	1495802	1	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1495637	1495802	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1495803	1495930	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1495931	1496169	1	+	2	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1495931	1496169	.	+	.	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	stop_codon	1496170	1496172	.	+	0	transcript_id "Ledus.S4G020900.t1"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	transcript	1491509	1496169	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	start_codon	1491509	1491511	.	+	0	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1491509	1491533	0.99	+	0	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1491509	1491533	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1491534	1491655	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1491656	1491890	0.98	+	2	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1491656	1491890	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1491891	1491974	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1491975	1492056	1	+	1	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1491975	1492056	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492057	1492300	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1492301	1492353	1	+	0	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1492301	1492353	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492354	1492541	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1492542	1492596	0.64	+	1	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1492542	1492596	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492597	1492698	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1492699	1492837	0.64	+	0	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1492699	1492837	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492838	1492906	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1492907	1492961	1	+	2	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1492907	1492961	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492962	1493247	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1493248	1493473	0.96	+	1	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1493248	1493473	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1493474	1493691	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1493692	1493787	1	+	0	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1493692	1493787	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1493788	1493860	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1493861	1493980	1	+	0	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1493861	1493980	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1493981	1494097	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1494098	1494223	0.97	+	0	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1494098	1494223	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1494224	1494329	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1494330	1494485	0.95	+	0	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1494330	1494485	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1494486	1494573	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1494574	1494690	0.96	+	0	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1494574	1494690	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1494691	1494802	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1494803	1494891	0.89	+	0	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1494803	1494891	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1494892	1495050	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1495051	1495122	0.93	+	1	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1495051	1495122	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1495123	1495298	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1495299	1495434	1	+	1	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1495299	1495434	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1495435	1495636	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1495637	1495802	1	+	0	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1495637	1495802	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1495803	1495930	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1495931	1496169	1	+	2	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1495931	1496169	.	+	.	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	stop_codon	1496170	1496172	.	+	0	transcript_id "Ledus.S4G020900.t2"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	transcript	1491509	1496169	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	start_codon	1491509	1491511	.	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1491509	1491533	0.97	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1491509	1491533	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1491534	1491655	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1491656	1491890	0.99	+	2	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1491656	1491890	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1491891	1491974	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1491975	1492056	1	+	1	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1491975	1492056	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492057	1492300	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1492301	1492353	1	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1492301	1492353	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492354	1492541	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1492542	1492596	0.61	+	1	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1492542	1492596	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492597	1492698	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1492699	1492837	0.59	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1492699	1492837	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492838	1492906	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1492907	1492961	1	+	2	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1492907	1492961	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1492962	1493179	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1493180	1493233	0.85	+	1	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1493180	1493233	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1493234	1493355	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1493356	1493473	0.66	+	1	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1493356	1493473	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1493474	1493691	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1493692	1493787	1	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1493692	1493787	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1493788	1493860	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1493861	1493980	1	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1493861	1493980	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1493981	1494097	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1494098	1494223	0.98	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1494098	1494223	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1494224	1494329	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1494330	1494485	0.99	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1494330	1494485	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1494486	1494573	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1494574	1494690	1	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1494574	1494690	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1494691	1494802	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1494803	1494928	0.96	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1494803	1494928	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1494929	1495050	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1495051	1495118	0.97	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1495051	1495118	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1495119	1495298	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1495299	1495434	1	+	1	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1495299	1495434	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1495435	1495636	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1495637	1495802	1	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1495637	1495802	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	intron	1495803	1495930	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	CDS	1495931	1496169	1	+	2	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	exon	1495931	1496169	.	+	.	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
Ledus.S4	AUGUSTUS	stop_codon	1496170	1496172	.	+	0	transcript_id "Ledus.S4G020900.t3"; gene_id "Ledus.S4G020900"
# This transcript jg4153.t1 is derived from g1589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14980490	14982256	.	-	.	Ledus.S1G157400
Ledus.S1	AUGUSTUS	transcript	14980490	14982256	.	-	.	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	stop_codon	14980487	14980489	.	-	0	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	CDS	14980490	14980516	1	-	0	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	exon	14980490	14980516	.	-	.	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	intron	14980517	14980987	.	-	.	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	CDS	14980988	14981078	1	-	1	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	exon	14980988	14981078	.	-	.	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	intron	14981079	14981456	.	-	.	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	CDS	14981457	14981565	1	-	2	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	exon	14981457	14981565	.	-	.	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	intron	14981566	14981650	.	-	.	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	CDS	14981651	14981888	1	-	0	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	exon	14981651	14981888	.	-	.	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	intron	14981889	14981980	.	-	.	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	CDS	14981981	14982256	0.52	-	0	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	exon	14981981	14982256	.	-	.	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
Ledus.S1	AUGUSTUS	start_codon	14982254	14982256	.	-	0	transcript_id "Ledus.S1G157400.t1"; gene_id "Ledus.S1G157400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5192.t1 is derived from g2631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22346598	22347746	.	-	.	Ledus.S1G261300
Ledus.S1	AUGUSTUS	transcript	22346598	22347746	.	-	.	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	stop_codon	22346595	22346597	.	-	0	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	CDS	22346598	22346991	1	-	1	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	exon	22346598	22346991	.	-	.	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	intron	22346992	22347075	.	-	.	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	CDS	22347076	22347269	1	-	0	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	exon	22347076	22347269	.	-	.	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	intron	22347270	22347360	.	-	.	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	CDS	22347361	22347461	1	-	2	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	exon	22347361	22347461	.	-	.	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	intron	22347462	22347568	.	-	.	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	CDS	22347569	22347746	0.99	-	0	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	exon	22347569	22347746	.	-	.	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
Ledus.S1	AUGUSTUS	start_codon	22347744	22347746	.	-	0	transcript_id "Ledus.S1G261300.t1"; gene_id "Ledus.S1G261300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13120.t1 is derived from g6930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6363800	6366565	.	-	.	Ledus.S6G018200
Ledus.S6	AUGUSTUS	transcript	6363800	6366565	.	-	.	transcript_id "Ledus.S6G018200.t1"; gene_id "Ledus.S6G018200"
Ledus.S6	AUGUSTUS	stop_codon	6363797	6363799	.	-	0	transcript_id "Ledus.S6G018200.t1"; gene_id "Ledus.S6G018200"
Ledus.S6	AUGUSTUS	CDS	6363800	6363816	0.96	-	2	transcript_id "Ledus.S6G018200.t1"; gene_id "Ledus.S6G018200"
Ledus.S6	AUGUSTUS	exon	6363800	6363816	.	-	.	transcript_id "Ledus.S6G018200.t1"; gene_id "Ledus.S6G018200"
Ledus.S6	AUGUSTUS	intron	6363817	6366477	.	-	.	transcript_id "Ledus.S6G018200.t1"; gene_id "Ledus.S6G018200"
Ledus.S6	AUGUSTUS	CDS	6366478	6366565	0.49	-	0	transcript_id "Ledus.S6G018200.t1"; gene_id "Ledus.S6G018200"
Ledus.S6	AUGUSTUS	exon	6366478	6366565	.	-	.	transcript_id "Ledus.S6G018200.t1"; gene_id "Ledus.S6G018200"
Ledus.S6	AUGUSTUS	start_codon	6366563	6366565	.	-	0	transcript_id "Ledus.S6G018200.t1"; gene_id "Ledus.S6G018200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11153.t1 is derived from g4771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2205997	2207343	.	+	.	Ledus.S4G030900
Ledus.S4	AUGUSTUS	transcript	2205997	2207343	.	+	.	transcript_id "Ledus.S4G030900.t1"; gene_id "Ledus.S4G030900"
Ledus.S4	AUGUSTUS	start_codon	2205997	2205999	.	+	0	transcript_id "Ledus.S4G030900.t1"; gene_id "Ledus.S4G030900"
Ledus.S4	AUGUSTUS	CDS	2205997	2207343	0.61	+	0	transcript_id "Ledus.S4G030900.t1"; gene_id "Ledus.S4G030900"
Ledus.S4	AUGUSTUS	exon	2205997	2207343	.	+	.	transcript_id "Ledus.S4G030900.t1"; gene_id "Ledus.S4G030900"
Ledus.S4	AUGUSTUS	stop_codon	2207344	2207346	.	+	0	transcript_id "Ledus.S4G030900.t1"; gene_id "Ledus.S4G030900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7048.t1 is derived from g6579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1018442	1020130	.	-	.	Ledus.C7G010900
Ledus.C7	AUGUSTUS	transcript	1018442	1020130	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	stop_codon	1018439	1018441	.	-	0	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	CDS	1018442	1018609	0.95	-	0	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	exon	1018442	1018609	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	intron	1018610	1018696	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	CDS	1018697	1018759	1	-	0	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	exon	1018697	1018759	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	intron	1018760	1018866	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	CDS	1018867	1019033	0.97	-	2	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	exon	1018867	1019033	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	intron	1019034	1019130	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	CDS	1019131	1019171	1	-	1	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	exon	1019131	1019171	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	intron	1019172	1019268	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	CDS	1019269	1019354	1	-	0	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	exon	1019269	1019354	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	intron	1019355	1019521	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	CDS	1019522	1019649	1	-	2	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	exon	1019522	1019649	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	intron	1019650	1019748	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	CDS	1019749	1019857	1	-	0	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	exon	1019749	1019857	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	intron	1019858	1020013	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	CDS	1020014	1020130	0.66	-	0	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	exon	1020014	1020130	.	-	.	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
Ledus.C7	AUGUSTUS	start_codon	1020128	1020130	.	-	0	transcript_id "Ledus.C7G010900.t1"; gene_id "Ledus.C7G010900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9156.t1 is derived from g10186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4909719	4912703	.	-	.	Ledus.S3G063300
Ledus.S3	AUGUSTUS	transcript	4909719	4912703	.	-	.	transcript_id "Ledus.S3G063300.t1"; gene_id "Ledus.S3G063300"
Ledus.S3	AUGUSTUS	stop_codon	4909716	4909718	.	-	0	transcript_id "Ledus.S3G063300.t1"; gene_id "Ledus.S3G063300"
Ledus.S3	AUGUSTUS	CDS	4909719	4912703	0.95	-	0	transcript_id "Ledus.S3G063300.t1"; gene_id "Ledus.S3G063300"
Ledus.S3	AUGUSTUS	exon	4909719	4912703	.	-	.	transcript_id "Ledus.S3G063300.t1"; gene_id "Ledus.S3G063300"
Ledus.S3	AUGUSTUS	start_codon	4912701	4912703	.	-	0	transcript_id "Ledus.S3G063300.t1"; gene_id "Ledus.S3G063300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10535.t1 is derived from g11565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16000744	16001201	.	-	.	Ledus.S3G201200
Ledus.S3	AUGUSTUS	transcript	16000744	16001201	.	-	.	transcript_id "Ledus.S3G201200.t1"; gene_id "Ledus.S3G201200"
Ledus.S3	AUGUSTUS	stop_codon	16000741	16000743	.	-	0	transcript_id "Ledus.S3G201200.t1"; gene_id "Ledus.S3G201200"
Ledus.S3	AUGUSTUS	CDS	16000744	16000836	0.42	-	0	transcript_id "Ledus.S3G201200.t1"; gene_id "Ledus.S3G201200"
Ledus.S3	AUGUSTUS	exon	16000744	16000836	.	-	.	transcript_id "Ledus.S3G201200.t1"; gene_id "Ledus.S3G201200"
Ledus.S3	AUGUSTUS	intron	16000837	16000969	.	-	.	transcript_id "Ledus.S3G201200.t1"; gene_id "Ledus.S3G201200"
Ledus.S3	AUGUSTUS	CDS	16000970	16000982	0.39	-	1	transcript_id "Ledus.S3G201200.t1"; gene_id "Ledus.S3G201200"
Ledus.S3	AUGUSTUS	exon	16000970	16000982	.	-	.	transcript_id "Ledus.S3G201200.t1"; gene_id "Ledus.S3G201200"
Ledus.S3	AUGUSTUS	intron	16000983	16001070	.	-	.	transcript_id "Ledus.S3G201200.t1"; gene_id "Ledus.S3G201200"
Ledus.S3	AUGUSTUS	CDS	16001071	16001201	0.38	-	0	transcript_id "Ledus.S3G201200.t1"; gene_id "Ledus.S3G201200"
Ledus.S3	AUGUSTUS	exon	16001071	16001201	.	-	.	transcript_id "Ledus.S3G201200.t1"; gene_id "Ledus.S3G201200"
Ledus.S3	AUGUSTUS	start_codon	16001199	16001201	.	-	0	transcript_id "Ledus.S3G201200.t1"; gene_id "Ledus.S3G201200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8964.t1 is derived from g9994.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3552991	3558218	.	-	.	Ledus.S3G044100
Ledus.S3	AUGUSTUS	transcript	3552991	3558218	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	stop_codon	3552988	3552990	.	-	0	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3552991	3553659	0.64	-	0	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3552991	3553659	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3553660	3553821	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3553822	3554170	0.62	-	1	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3553822	3554170	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3554171	3554287	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3554288	3554439	1	-	0	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3554288	3554439	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3554440	3554579	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3554580	3554935	0.66	-	2	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3554580	3554935	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3554936	3555110	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3555111	3555297	0.45	-	0	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3555111	3555297	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3555298	3555552	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3555553	3555783	0.83	-	0	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3555553	3555783	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3555784	3555966	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3555967	3556030	0.93	-	1	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3555967	3556030	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3556031	3556369	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3556370	3556520	0.91	-	2	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3556370	3556520	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3556521	3556638	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3556639	3556750	0.99	-	0	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3556639	3556750	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3556751	3556877	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3556878	3556939	0.99	-	2	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3556878	3556939	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3556940	3557012	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3557013	3557121	0.52	-	0	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3557013	3557121	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3557122	3557241	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3557242	3557288	0.52	-	2	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3557242	3557288	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3557289	3557392	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3557393	3557535	1	-	1	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3557393	3557535	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3557536	3557663	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3557664	3557737	1	-	0	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3557664	3557737	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3557738	3557836	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3557837	3557935	1	-	0	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3557837	3557935	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3557936	3558026	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3558027	3558218	0.78	-	0	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3558027	3558218	.	-	.	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	start_codon	3558216	3558218	.	-	0	transcript_id "Ledus.S3G044100.t1"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	transcript	3552991	3558218	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	stop_codon	3552988	3552990	.	-	0	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3552991	3553659	0.63	-	0	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3552991	3553659	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3553660	3553821	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3553822	3554170	0.64	-	1	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3553822	3554170	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3554171	3554287	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3554288	3554436	1	-	0	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3554288	3554436	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3554437	3554579	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3554580	3554935	0.65	-	2	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3554580	3554935	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3554936	3555110	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3555111	3555297	0.39	-	0	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3555111	3555297	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3555298	3555552	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3555553	3555783	0.81	-	0	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3555553	3555783	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3555784	3555966	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3555967	3556030	0.92	-	1	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3555967	3556030	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3556031	3556369	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3556370	3556520	0.89	-	2	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3556370	3556520	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3556521	3556638	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3556639	3556750	0.98	-	0	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3556639	3556750	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3556751	3556877	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3556878	3556939	0.99	-	2	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3556878	3556939	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3556940	3557012	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3557013	3557121	0.52	-	0	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3557013	3557121	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3557122	3557241	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3557242	3557288	0.52	-	2	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3557242	3557288	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3557289	3557392	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3557393	3557535	1	-	1	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3557393	3557535	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3557536	3557663	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3557664	3557737	1	-	0	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3557664	3557737	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3557738	3557836	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3557837	3557935	1	-	0	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3557837	3557935	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	intron	3557936	3558026	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	CDS	3558027	3558218	0.8	-	0	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	exon	3558027	3558218	.	-	.	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
Ledus.S3	AUGUSTUS	start_codon	3558216	3558218	.	-	0	transcript_id "Ledus.S3G044100.t2"; gene_id "Ledus.S3G044100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12284.t1 is derived from g5904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10862521	10863105	.	-	.	Ledus.S4G144000
Ledus.S4	AUGUSTUS	transcript	10862521	10863105	.	-	.	transcript_id "Ledus.S4G144000.t1"; gene_id "Ledus.S4G144000"
Ledus.S4	AUGUSTUS	stop_codon	10862518	10862520	.	-	0	transcript_id "Ledus.S4G144000.t1"; gene_id "Ledus.S4G144000"
Ledus.S4	AUGUSTUS	CDS	10862521	10863105	0.84	-	0	transcript_id "Ledus.S4G144000.t1"; gene_id "Ledus.S4G144000"
Ledus.S4	AUGUSTUS	exon	10862521	10863105	.	-	.	transcript_id "Ledus.S4G144000.t1"; gene_id "Ledus.S4G144000"
Ledus.S4	AUGUSTUS	start_codon	10863103	10863105	.	-	0	transcript_id "Ledus.S4G144000.t1"; gene_id "Ledus.S4G144000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6004.t1 is derived from g3447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28223747	28224211	.	-	.	Ledus.S1G342500
Ledus.S1	AUGUSTUS	transcript	28223747	28224211	.	-	.	transcript_id "Ledus.S1G342500.t1"; gene_id "Ledus.S1G342500"
Ledus.S1	AUGUSTUS	stop_codon	28223744	28223746	.	-	0	transcript_id "Ledus.S1G342500.t1"; gene_id "Ledus.S1G342500"
Ledus.S1	AUGUSTUS	CDS	28223747	28223994	1	-	2	transcript_id "Ledus.S1G342500.t1"; gene_id "Ledus.S1G342500"
Ledus.S1	AUGUSTUS	exon	28223747	28223994	.	-	.	transcript_id "Ledus.S1G342500.t1"; gene_id "Ledus.S1G342500"
Ledus.S1	AUGUSTUS	intron	28223995	28224072	.	-	.	transcript_id "Ledus.S1G342500.t1"; gene_id "Ledus.S1G342500"
Ledus.S1	AUGUSTUS	CDS	28224073	28224211	0.92	-	0	transcript_id "Ledus.S1G342500.t1"; gene_id "Ledus.S1G342500"
Ledus.S1	AUGUSTUS	exon	28224073	28224211	.	-	.	transcript_id "Ledus.S1G342500.t1"; gene_id "Ledus.S1G342500"
Ledus.S1	AUGUSTUS	start_codon	28224209	28224211	.	-	0	transcript_id "Ledus.S1G342500.t1"; gene_id "Ledus.S1G342500"
# This transcript jg8528.t2 is derived from g9558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8529.t1 is derived from g9559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	45736	48267	.	-	.	Ledus.S3G000600
Ledus.S3	AUGUSTUS	transcript	45736	48267	.	-	.	transcript_id "Ledus.S3G000600.t1"; gene_id "Ledus.S3G000600"
Ledus.S3	AUGUSTUS	stop_codon	45733	45735	.	-	0	transcript_id "Ledus.S3G000600.t1"; gene_id "Ledus.S3G000600"
Ledus.S3	AUGUSTUS	CDS	45736	48267	0.67	-	0	transcript_id "Ledus.S3G000600.t1"; gene_id "Ledus.S3G000600"
Ledus.S3	AUGUSTUS	exon	45736	48267	.	-	.	transcript_id "Ledus.S3G000600.t1"; gene_id "Ledus.S3G000600"
Ledus.S3	AUGUSTUS	start_codon	48265	48267	.	-	0	transcript_id "Ledus.S3G000600.t1"; gene_id "Ledus.S3G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4559.t1 is derived from g1996.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17673662	17676991	.	+	.	Ledus.S1G198000
Ledus.S1	AUGUSTUS	transcript	17673662	17674829	.	+	.	transcript_id "Ledus.S1G198000.t1"; gene_id "Ledus.S1G198000"
Ledus.S1	AUGUSTUS	start_codon	17673662	17673664	.	+	0	transcript_id "Ledus.S1G198000.t1"; gene_id "Ledus.S1G198000"
Ledus.S1	AUGUSTUS	CDS	17673662	17674653	0.64	+	0	transcript_id "Ledus.S1G198000.t1"; gene_id "Ledus.S1G198000"
Ledus.S1	AUGUSTUS	exon	17673662	17674653	.	+	.	transcript_id "Ledus.S1G198000.t1"; gene_id "Ledus.S1G198000"
Ledus.S1	AUGUSTUS	intron	17674654	17674816	.	+	.	transcript_id "Ledus.S1G198000.t1"; gene_id "Ledus.S1G198000"
Ledus.S1	AUGUSTUS	CDS	17674817	17674829	0.93	+	1	transcript_id "Ledus.S1G198000.t1"; gene_id "Ledus.S1G198000"
Ledus.S1	AUGUSTUS	exon	17674817	17674829	.	+	.	transcript_id "Ledus.S1G198000.t1"; gene_id "Ledus.S1G198000"
Ledus.S1	AUGUSTUS	stop_codon	17674830	17674832	.	+	0	transcript_id "Ledus.S1G198000.t1"; gene_id "Ledus.S1G198000"
Ledus.S1	AUGUSTUS	transcript	17673662	17676991	.	+	.	transcript_id "Ledus.S1G198000.t2"; gene_id "Ledus.S1G198000"
Ledus.S1	AUGUSTUS	start_codon	17673662	17673664	.	+	0	transcript_id "Ledus.S1G198000.t2"; gene_id "Ledus.S1G198000"
Ledus.S1	AUGUSTUS	CDS	17673662	17676991	0.75	+	0	transcript_id "Ledus.S1G198000.t2"; gene_id "Ledus.S1G198000"
Ledus.S1	AUGUSTUS	exon	17673662	17676991	.	+	.	transcript_id "Ledus.S1G198000.t2"; gene_id "Ledus.S1G198000"
Ledus.S1	AUGUSTUS	stop_codon	17676992	17676994	.	+	0	transcript_id "Ledus.S1G198000.t2"; gene_id "Ledus.S1G198000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4568.t1 is derived from g2005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17755029	17757498	.	-	.	Ledus.S1G198900
Ledus.S1	AUGUSTUS	transcript	17755029	17757498	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	stop_codon	17755026	17755028	.	-	0	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	CDS	17755029	17755147	0.93	-	2	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	exon	17755029	17755147	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	intron	17755148	17755238	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	CDS	17755239	17755320	1	-	0	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	exon	17755239	17755320	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	intron	17755321	17755442	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	CDS	17755443	17755517	1	-	0	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	exon	17755443	17755517	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	intron	17755518	17755634	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	CDS	17755635	17755863	1	-	1	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	exon	17755635	17755863	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	intron	17755864	17755959	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	CDS	17755960	17756122	0.98	-	2	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	exon	17755960	17756122	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	intron	17756123	17756238	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	CDS	17756239	17756531	0.92	-	1	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	exon	17756239	17756531	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	intron	17756532	17756644	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	CDS	17756645	17756811	1	-	0	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	exon	17756645	17756811	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	intron	17756812	17756908	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	CDS	17756909	17757000	1	-	2	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	exon	17756909	17757000	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	intron	17757001	17757200	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	CDS	17757201	17757498	0.97	-	0	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	exon	17757201	17757498	.	-	.	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
Ledus.S1	AUGUSTUS	start_codon	17757496	17757498	.	-	0	transcript_id "Ledus.S1G198900.t1"; gene_id "Ledus.S1G198900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10859.t1 is derived from g4477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	149798	150880	.	+	.	Ledus.S4G001500
Ledus.S4	AUGUSTUS	transcript	149798	150880	.	+	.	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	start_codon	149798	149800	.	+	0	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	CDS	149798	149872	1	+	0	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	exon	149798	149872	.	+	.	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	intron	149873	150151	.	+	.	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	CDS	150152	150188	0.94	+	0	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	exon	150152	150188	.	+	.	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	intron	150189	150293	.	+	.	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	CDS	150294	150332	0.93	+	2	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	exon	150294	150332	.	+	.	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	intron	150333	150530	.	+	.	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	CDS	150531	150880	0.61	+	2	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	exon	150531	150880	.	+	.	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
Ledus.S4	AUGUSTUS	stop_codon	150881	150883	.	+	0	transcript_id "Ledus.S4G001500.t1"; gene_id "Ledus.S4G001500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7501.t1 is derived from g12172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3485779	3486243	.	-	.	Ledus.S5G027900
Ledus.S5	AUGUSTUS	transcript	3485779	3486243	.	-	.	transcript_id "Ledus.S5G027900.t1"; gene_id "Ledus.S5G027900"
Ledus.S5	AUGUSTUS	stop_codon	3485776	3485778	.	-	0	transcript_id "Ledus.S5G027900.t1"; gene_id "Ledus.S5G027900"
Ledus.S5	AUGUSTUS	CDS	3485779	3486243	0.52	-	0	transcript_id "Ledus.S5G027900.t1"; gene_id "Ledus.S5G027900"
Ledus.S5	AUGUSTUS	exon	3485779	3486243	.	-	.	transcript_id "Ledus.S5G027900.t1"; gene_id "Ledus.S5G027900"
Ledus.S5	AUGUSTUS	start_codon	3486241	3486243	.	-	0	transcript_id "Ledus.S5G027900.t1"; gene_id "Ledus.S5G027900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8906.t1 is derived from g9936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2972912	2975187	.	+	.	Ledus.S3G038300
Ledus.S3	AUGUSTUS	transcript	2972912	2975187	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	start_codon	2972912	2972914	.	+	0	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	CDS	2972912	2973079	0.91	+	0	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	exon	2972912	2973079	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	intron	2973080	2973169	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	CDS	2973170	2973644	0.99	+	0	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	exon	2973170	2973644	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	intron	2973645	2973782	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	CDS	2973783	2973913	1	+	2	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	exon	2973783	2973913	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	intron	2973914	2973988	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	CDS	2973989	2974206	1	+	0	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	exon	2973989	2974206	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	intron	2974207	2974289	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	CDS	2974290	2974525	1	+	1	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	exon	2974290	2974525	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	intron	2974526	2974615	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	CDS	2974616	2974815	0.99	+	2	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	exon	2974616	2974815	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	intron	2974816	2974903	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	CDS	2974904	2975029	1	+	0	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	exon	2974904	2975029	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	intron	2975030	2975106	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	CDS	2975107	2975187	1	+	0	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	exon	2975107	2975187	.	+	.	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
Ledus.S3	AUGUSTUS	stop_codon	2975188	2975190	.	+	0	transcript_id "Ledus.S3G038300.t1"; gene_id "Ledus.S3G038300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4432.t1 is derived from g1868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17094918	17096080	.	-	.	Ledus.S1G185300
Ledus.S1	AUGUSTUS	transcript	17094918	17096080	.	-	.	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	stop_codon	17094915	17094917	.	-	0	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	CDS	17094918	17094974	0.66	-	0	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	exon	17094918	17094974	.	-	.	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	intron	17094975	17095059	.	-	.	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	CDS	17095060	17095125	1	-	0	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	exon	17095060	17095125	.	-	.	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	intron	17095126	17095220	.	-	.	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	CDS	17095221	17095280	1	-	0	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	exon	17095221	17095280	.	-	.	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	intron	17095281	17095364	.	-	.	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	CDS	17095365	17095463	1	-	0	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	exon	17095365	17095463	.	-	.	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	intron	17095464	17095564	.	-	.	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	CDS	17095565	17095800	0.83	-	2	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	exon	17095565	17095800	.	-	.	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	intron	17095801	17095911	.	-	.	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	CDS	17095912	17096080	0.78	-	0	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	exon	17095912	17096080	.	-	.	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
Ledus.S1	AUGUSTUS	start_codon	17096078	17096080	.	-	0	transcript_id "Ledus.S1G185300.t1"; gene_id "Ledus.S1G185300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg6509.t1 is derived from g3952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31770565	31776050	.	+	.	Ledus.S1G393000
Ledus.S1	AUGUSTUS	transcript	31770565	31776050	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	start_codon	31770565	31770567	.	+	0	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31770565	31770704	0.72	+	0	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31770565	31770704	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31770705	31770773	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31770774	31770903	0.87	+	1	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31770774	31770903	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31770904	31771170	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31771171	31771271	0.98	+	0	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31771171	31771271	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31771272	31771381	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31771382	31771523	0.99	+	1	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31771382	31771523	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31771524	31771674	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31771675	31771983	1	+	0	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31771675	31771983	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31771984	31772082	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31772083	31772239	1	+	0	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31772083	31772239	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31772240	31772336	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31772337	31773235	1	+	2	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31772337	31773235	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31773236	31773353	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31773354	31773471	1	+	0	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31773354	31773471	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31773472	31773590	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31773591	31773658	1	+	2	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31773591	31773658	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31773659	31773795	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31773796	31773899	1	+	0	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31773796	31773899	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31773900	31774008	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774009	31774096	1	+	1	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774009	31774096	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774097	31774180	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774181	31774295	0.71	+	0	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774181	31774295	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774296	31774412	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774413	31774525	0.72	+	2	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774413	31774525	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774526	31774605	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774606	31774742	0.77	+	0	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774606	31774742	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774743	31774837	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774838	31774936	0.35	+	1	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774838	31774936	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774937	31775612	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31775613	31775852	0.54	+	1	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31775613	31775852	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31775853	31776049	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31776050	31776050	0.66	+	1	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31776050	31776050	.	+	.	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	stop_codon	31776051	31776053	.	+	0	transcript_id "Ledus.S1G393000.t1"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	transcript	31770565	31776050	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	start_codon	31770565	31770567	.	+	0	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31770565	31770704	0.59	+	0	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31770565	31770704	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31770705	31770773	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31770774	31771086	0.73	+	1	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31770774	31771086	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31771087	31771170	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31771171	31771271	0.98	+	0	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31771171	31771271	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31771272	31771381	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31771382	31771523	1	+	1	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31771382	31771523	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31771524	31771674	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31771675	31771983	0.95	+	0	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31771675	31771983	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31771984	31772082	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31772083	31772239	1	+	0	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31772083	31772239	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31772240	31772336	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31772337	31773235	1	+	2	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31772337	31773235	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31773236	31773353	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31773354	31773471	1	+	0	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31773354	31773471	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31773472	31773590	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31773591	31773658	1	+	2	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31773591	31773658	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31773659	31773795	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31773796	31773899	1	+	0	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31773796	31773899	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31773900	31774008	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774009	31774096	1	+	1	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774009	31774096	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774097	31774180	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774181	31774295	0.59	+	0	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774181	31774295	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774296	31774412	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774413	31774525	0.6	+	2	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774413	31774525	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774526	31774605	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774606	31774742	0.73	+	0	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774606	31774742	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774743	31774837	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774838	31774936	0.36	+	1	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774838	31774936	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774937	31775612	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31775613	31775852	0.47	+	1	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31775613	31775852	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31775853	31776049	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31776050	31776050	0.6	+	1	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31776050	31776050	.	+	.	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	stop_codon	31776051	31776053	.	+	0	transcript_id "Ledus.S1G393000.t2"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	transcript	31770565	31776050	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	start_codon	31770565	31770567	.	+	0	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31770565	31770704	0.77	+	0	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31770565	31770704	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31770705	31770773	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31770774	31770903	0.86	+	1	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31770774	31770903	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31770904	31771170	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31771171	31771271	1	+	0	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31771171	31771271	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31771272	31771381	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31771382	31771523	1	+	1	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31771382	31771523	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31771524	31771674	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31771675	31771983	0.98	+	0	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31771675	31771983	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31771984	31772082	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31772083	31772239	1	+	0	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31772083	31772239	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31772240	31772345	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31772346	31773235	0.77	+	2	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31772346	31773235	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31773236	31773353	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31773354	31773471	1	+	0	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31773354	31773471	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31773472	31773590	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31773591	31773658	1	+	2	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31773591	31773658	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31773659	31773795	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31773796	31773899	1	+	0	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31773796	31773899	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31773900	31774008	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774009	31774096	1	+	1	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774009	31774096	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774097	31774180	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774181	31774295	0.6	+	0	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774181	31774295	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774296	31774412	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774413	31774525	0.65	+	2	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774413	31774525	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774526	31774605	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774606	31774742	0.72	+	0	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774606	31774742	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774743	31774837	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31774838	31774936	0.32	+	1	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31774838	31774936	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31774937	31775612	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31775613	31775852	0.41	+	1	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31775613	31775852	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	intron	31775853	31776049	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	CDS	31776050	31776050	0.53	+	1	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	exon	31776050	31776050	.	+	.	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
Ledus.S1	AUGUSTUS	stop_codon	31776051	31776053	.	+	0	transcript_id "Ledus.S1G393000.t3"; gene_id "Ledus.S1G393000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6830.t1 is derived from g4274.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34551648	34552972	.	+	.	Ledus.S1G425100
Ledus.S1	AUGUSTUS	transcript	34551648	34552972	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	start_codon	34551648	34551650	.	+	0	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	CDS	34551648	34551722	1	+	0	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	exon	34551648	34551722	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	intron	34551723	34551829	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	CDS	34551830	34551895	1	+	0	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	exon	34551830	34551895	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	intron	34551896	34552011	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	CDS	34552012	34552051	1	+	0	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	exon	34552012	34552051	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	intron	34552052	34552189	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	CDS	34552190	34552309	1	+	2	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	exon	34552190	34552309	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	intron	34552310	34552484	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	CDS	34552485	34552565	1	+	2	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	exon	34552485	34552565	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	intron	34552566	34552663	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	CDS	34552664	34552828	0.93	+	2	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	exon	34552664	34552828	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	intron	34552829	34552934	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	CDS	34552935	34552972	0.25	+	2	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	exon	34552935	34552972	.	+	.	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
Ledus.S1	AUGUSTUS	stop_codon	34552973	34552975	.	+	0	transcript_id "Ledus.S1G425100.t1"; gene_id "Ledus.S1G425100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg327.t1 is derived from g7188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1682270	1683872	.	+	.	Ledus.S2G020900
Ledus.S2	AUGUSTUS	transcript	1682462	1683872	.	+	.	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	start_codon	1682462	1682464	.	+	0	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1682462	1682473	0.71	+	0	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1682462	1682473	.	+	.	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1682474	1682585	.	+	.	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1682586	1682769	0.89	+	0	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1682586	1682769	.	+	.	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1682770	1682861	.	+	.	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1682862	1682986	0.98	+	2	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1682862	1682986	.	+	.	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1682987	1683104	.	+	.	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1683105	1683259	0.86	+	0	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1683105	1683259	.	+	.	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1683260	1683378	.	+	.	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1683379	1683640	1	+	1	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1683379	1683640	.	+	.	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1683641	1683716	.	+	.	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1683717	1683872	1	+	0	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1683717	1683872	.	+	.	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	stop_codon	1683873	1683875	.	+	0	transcript_id "Ledus.S2G020900.t1"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	transcript	1682270	1683872	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	start_codon	1682270	1682272	.	+	0	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1682270	1682370	0.55	+	0	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1682270	1682370	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1682371	1682473	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1682474	1682489	0.85	+	1	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1682474	1682489	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1682490	1682585	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1682586	1682769	0.99	+	0	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1682586	1682769	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1682770	1682864	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1682865	1682986	0.97	+	2	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1682865	1682986	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1682987	1683104	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1683105	1683259	0.91	+	0	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1683105	1683259	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1683260	1683378	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1683379	1683640	1	+	1	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1683379	1683640	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1683641	1683716	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1683717	1683872	1	+	0	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1683717	1683872	.	+	.	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	stop_codon	1683873	1683875	.	+	0	transcript_id "Ledus.S2G020900.t2"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	transcript	1682270	1683872	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	start_codon	1682270	1682272	.	+	0	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1682270	1682370	0.57	+	0	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1682270	1682370	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1682371	1682473	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1682474	1682489	0.82	+	1	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1682474	1682489	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1682490	1682585	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1682586	1682769	1	+	0	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1682586	1682769	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1682770	1682861	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1682862	1682986	0.97	+	2	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1682862	1682986	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1682987	1683104	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1683105	1683259	0.82	+	0	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1683105	1683259	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1683260	1683378	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1683379	1683640	0.99	+	1	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1683379	1683640	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	intron	1683641	1683716	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	CDS	1683717	1683872	1	+	0	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	exon	1683717	1683872	.	+	.	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
Ledus.S2	AUGUSTUS	stop_codon	1683873	1683875	.	+	0	transcript_id "Ledus.S2G020900.t3"; gene_id "Ledus.S2G020900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1561.t1 is derived from g8422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10940862	10946389	.	+	.	Ledus.S2G144300
Ledus.S2	AUGUSTUS	transcript	10940862	10946389	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	start_codon	10940862	10940864	.	+	0	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	CDS	10940862	10942451	0.73	+	0	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	exon	10940862	10942451	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	intron	10942452	10942638	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	CDS	10942639	10943490	0.95	+	0	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	exon	10942639	10943490	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	intron	10943491	10943791	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	CDS	10943792	10943955	1	+	0	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	exon	10943792	10943955	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	intron	10943956	10944113	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	CDS	10944114	10944252	1	+	1	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	exon	10944114	10944252	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	intron	10944253	10944343	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	CDS	10944344	10944427	1	+	0	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	exon	10944344	10944427	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	intron	10944428	10944531	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	CDS	10944532	10944816	1	+	0	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	exon	10944532	10944816	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	intron	10944817	10945015	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	CDS	10945016	10945159	0.81	+	0	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	exon	10945016	10945159	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	intron	10945160	10945272	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	CDS	10945273	10945472	0.98	+	0	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	exon	10945273	10945472	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	intron	10945473	10945569	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	CDS	10945570	10945801	1	+	1	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	exon	10945570	10945801	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	intron	10945802	10945954	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	CDS	10945955	10946090	1	+	0	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	exon	10945955	10946090	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	intron	10946091	10946177	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	CDS	10946178	10946389	0.62	+	2	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	exon	10946178	10946389	.	+	.	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
Ledus.S2	AUGUSTUS	stop_codon	10946390	10946392	.	+	0	transcript_id "Ledus.S2G144300.t1"; gene_id "Ledus.S2G144300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9387.t1 is derived from g10417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6464977	6465829	.	-	.	Ledus.S3G086400
Ledus.S3	AUGUSTUS	transcript	6464977	6465829	.	-	.	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	stop_codon	6464974	6464976	.	-	0	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	CDS	6464977	6465026	0.8	-	2	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	exon	6464977	6465026	.	-	.	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	intron	6465027	6465108	.	-	.	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	CDS	6465109	6465192	1	-	2	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	exon	6465109	6465192	.	-	.	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	intron	6465193	6465269	.	-	.	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	CDS	6465270	6465306	1	-	0	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	exon	6465270	6465306	.	-	.	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	intron	6465307	6465400	.	-	.	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	CDS	6465401	6465829	0.93	-	0	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	exon	6465401	6465829	.	-	.	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
Ledus.S3	AUGUSTUS	start_codon	6465827	6465829	.	-	0	transcript_id "Ledus.S3G086400.t1"; gene_id "Ledus.S3G086400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5631.t1 is derived from g3070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25448132	25450091	.	-	.	Ledus.S1G305200
Ledus.S1	AUGUSTUS	transcript	25448132	25450091	.	-	.	transcript_id "Ledus.S1G305200.t1"; gene_id "Ledus.S1G305200"
Ledus.S1	AUGUSTUS	stop_codon	25448129	25448131	.	-	0	transcript_id "Ledus.S1G305200.t1"; gene_id "Ledus.S1G305200"
Ledus.S1	AUGUSTUS	CDS	25448132	25448633	0.98	-	1	transcript_id "Ledus.S1G305200.t1"; gene_id "Ledus.S1G305200"
Ledus.S1	AUGUSTUS	exon	25448132	25448633	.	-	.	transcript_id "Ledus.S1G305200.t1"; gene_id "Ledus.S1G305200"
Ledus.S1	AUGUSTUS	intron	25448634	25449213	.	-	.	transcript_id "Ledus.S1G305200.t1"; gene_id "Ledus.S1G305200"
Ledus.S1	AUGUSTUS	CDS	25449214	25450091	0.69	-	0	transcript_id "Ledus.S1G305200.t1"; gene_id "Ledus.S1G305200"
Ledus.S1	AUGUSTUS	exon	25449214	25450091	.	-	.	transcript_id "Ledus.S1G305200.t1"; gene_id "Ledus.S1G305200"
Ledus.S1	AUGUSTUS	start_codon	25450089	25450091	.	-	0	transcript_id "Ledus.S1G305200.t1"; gene_id "Ledus.S1G305200"
# This transcript jg6349.t2 is derived from g3792.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6350.t1 is derived from g3793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30696555	30697010	.	+	.	Ledus.S1G377100
Ledus.S1	AUGUSTUS	transcript	30696555	30697010	.	+	.	transcript_id "Ledus.S1G377100.t1"; gene_id "Ledus.S1G377100"
Ledus.S1	AUGUSTUS	start_codon	30696555	30696557	.	+	0	transcript_id "Ledus.S1G377100.t1"; gene_id "Ledus.S1G377100"
Ledus.S1	AUGUSTUS	CDS	30696555	30696665	0.98	+	0	transcript_id "Ledus.S1G377100.t1"; gene_id "Ledus.S1G377100"
Ledus.S1	AUGUSTUS	exon	30696555	30696665	.	+	.	transcript_id "Ledus.S1G377100.t1"; gene_id "Ledus.S1G377100"
Ledus.S1	AUGUSTUS	intron	30696666	30696824	.	+	.	transcript_id "Ledus.S1G377100.t1"; gene_id "Ledus.S1G377100"
Ledus.S1	AUGUSTUS	CDS	30696825	30697010	0.87	+	0	transcript_id "Ledus.S1G377100.t1"; gene_id "Ledus.S1G377100"
Ledus.S1	AUGUSTUS	exon	30696825	30697010	.	+	.	transcript_id "Ledus.S1G377100.t1"; gene_id "Ledus.S1G377100"
Ledus.S1	AUGUSTUS	stop_codon	30697011	30697013	.	+	0	transcript_id "Ledus.S1G377100.t1"; gene_id "Ledus.S1G377100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10210.t1 is derived from g11240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13611525	13612691	.	+	.	Ledus.S3G168700
Ledus.S3	AUGUSTUS	transcript	13611525	13612691	.	+	.	transcript_id "Ledus.S3G168700.t1"; gene_id "Ledus.S3G168700"
Ledus.S3	AUGUSTUS	start_codon	13611525	13611527	.	+	0	transcript_id "Ledus.S3G168700.t1"; gene_id "Ledus.S3G168700"
Ledus.S3	AUGUSTUS	CDS	13611525	13612691	0.84	+	0	transcript_id "Ledus.S3G168700.t1"; gene_id "Ledus.S3G168700"
Ledus.S3	AUGUSTUS	exon	13611525	13612691	.	+	.	transcript_id "Ledus.S3G168700.t1"; gene_id "Ledus.S3G168700"
Ledus.S3	AUGUSTUS	stop_codon	13612692	13612694	.	+	0	transcript_id "Ledus.S3G168700.t1"; gene_id "Ledus.S3G168700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8672.t1 is derived from g9702.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1299889	1301313	.	-	.	Ledus.S3G014900
Ledus.S3	AUGUSTUS	transcript	1299889	1301313	.	-	.	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	stop_codon	1299886	1299888	.	-	0	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	CDS	1299889	1300281	1	-	0	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	exon	1299889	1300281	.	-	.	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	intron	1300282	1300379	.	-	.	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	CDS	1300380	1300448	1	-	0	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	exon	1300380	1300448	.	-	.	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	intron	1300449	1300533	.	-	.	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	CDS	1300534	1300596	1	-	0	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	exon	1300534	1300596	.	-	.	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	intron	1300597	1300692	.	-	.	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	CDS	1300693	1300782	1	-	0	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	exon	1300693	1300782	.	-	.	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	intron	1300783	1300865	.	-	.	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	CDS	1300866	1300988	1	-	0	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	exon	1300866	1300988	.	-	.	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	intron	1300989	1301142	.	-	.	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	CDS	1301143	1301313	0.64	-	0	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	exon	1301143	1301313	.	-	.	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	start_codon	1301311	1301313	.	-	0	transcript_id "Ledus.S3G014900.t1"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	transcript	1299889	1301313	.	-	.	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	stop_codon	1299886	1299888	.	-	0	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	CDS	1299889	1300281	1	-	0	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	exon	1299889	1300281	.	-	.	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	intron	1300282	1300379	.	-	.	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	CDS	1300380	1300448	1	-	0	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	exon	1300380	1300448	.	-	.	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	intron	1300449	1300533	.	-	.	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	CDS	1300534	1300596	1	-	0	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	exon	1300534	1300596	.	-	.	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	intron	1300597	1300692	.	-	.	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	CDS	1300693	1300767	0.98	-	0	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	exon	1300693	1300767	.	-	.	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	intron	1300768	1300865	.	-	.	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	CDS	1300866	1300988	1	-	0	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	exon	1300866	1300988	.	-	.	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	intron	1300989	1301142	.	-	.	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	CDS	1301143	1301313	0.65	-	0	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	exon	1301143	1301313	.	-	.	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
Ledus.S3	AUGUSTUS	start_codon	1301311	1301313	.	-	0	transcript_id "Ledus.S3G014900.t2"; gene_id "Ledus.S3G014900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7262.t1 is derived from g11933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	529228	530959	.	-	.	Ledus.S5G004000
Ledus.S5	AUGUSTUS	transcript	529228	530959	.	-	.	transcript_id "Ledus.S5G004000.t1"; gene_id "Ledus.S5G004000"
Ledus.S5	AUGUSTUS	stop_codon	529225	529227	.	-	0	transcript_id "Ledus.S5G004000.t1"; gene_id "Ledus.S5G004000"
Ledus.S5	AUGUSTUS	CDS	529228	529293	0.85	-	0	transcript_id "Ledus.S5G004000.t1"; gene_id "Ledus.S5G004000"
Ledus.S5	AUGUSTUS	exon	529228	529293	.	-	.	transcript_id "Ledus.S5G004000.t1"; gene_id "Ledus.S5G004000"
Ledus.S5	AUGUSTUS	intron	529294	529383	.	-	.	transcript_id "Ledus.S5G004000.t1"; gene_id "Ledus.S5G004000"
Ledus.S5	AUGUSTUS	CDS	529384	529545	0.73	-	0	transcript_id "Ledus.S5G004000.t1"; gene_id "Ledus.S5G004000"
Ledus.S5	AUGUSTUS	exon	529384	529545	.	-	.	transcript_id "Ledus.S5G004000.t1"; gene_id "Ledus.S5G004000"
Ledus.S5	AUGUSTUS	intron	529546	529660	.	-	.	transcript_id "Ledus.S5G004000.t1"; gene_id "Ledus.S5G004000"
Ledus.S5	AUGUSTUS	CDS	529661	530959	0.67	-	0	transcript_id "Ledus.S5G004000.t1"; gene_id "Ledus.S5G004000"
Ledus.S5	AUGUSTUS	exon	529661	530959	.	-	.	transcript_id "Ledus.S5G004000.t1"; gene_id "Ledus.S5G004000"
Ledus.S5	AUGUSTUS	start_codon	530957	530959	.	-	0	transcript_id "Ledus.S5G004000.t1"; gene_id "Ledus.S5G004000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4427.t1 is derived from g1863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17057519	17058317	.	-	.	Ledus.S1G184800
Ledus.S1	AUGUSTUS	transcript	17057519	17058317	.	-	.	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	stop_codon	17057516	17057518	.	-	0	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	CDS	17057519	17057531	0.56	-	1	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	exon	17057519	17057531	.	-	.	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	intron	17057532	17057625	.	-	.	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	CDS	17057626	17057713	0.38	-	2	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	exon	17057626	17057713	.	-	.	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	intron	17057714	17057888	.	-	.	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	CDS	17057889	17057968	0.37	-	1	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	exon	17057889	17057968	.	-	.	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	intron	17057969	17058114	.	-	.	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	CDS	17058115	17058317	0.43	-	0	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	exon	17058115	17058317	.	-	.	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
Ledus.S1	AUGUSTUS	start_codon	17058315	17058317	.	-	0	transcript_id "Ledus.S1G184800.t1"; gene_id "Ledus.S1G184800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 5 different transcripts
# This transcript jg11408.t1 is derived from g5026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4053745	4058931	.	+	.	Ledus.S4G056400
Ledus.S4	AUGUSTUS	transcript	4056284	4058931	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	start_codon	4056284	4056286	.	+	0	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4056284	4056541	0.66	+	0	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4056284	4056541	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4056542	4056620	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4056621	4056749	1	+	0	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4056621	4056749	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4056750	4056842	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4056843	4056935	1	+	0	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4056843	4056935	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4056936	4057032	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4057033	4057164	1	+	0	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4057033	4057164	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4057165	4057265	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4057266	4057334	1	+	0	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4057266	4057334	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4057335	4057427	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4057428	4057511	1	+	0	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4057428	4057511	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4057512	4057636	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4057637	4057817	0.97	+	0	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4057637	4057817	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4057818	4057929	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4057930	4058049	1	+	2	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4057930	4058049	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4058050	4058167	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4058168	4058226	1	+	2	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4058168	4058226	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4058227	4058420	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4058421	4058555	1	+	0	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4058421	4058555	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4058556	4058648	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4058649	4058798	1	+	0	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4058649	4058798	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4058799	4058880	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4058881	4058931	1	+	0	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4058881	4058931	.	+	.	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	stop_codon	4058932	4058934	.	+	0	transcript_id "Ledus.S4G056400.t1"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	transcript	4053745	4055542	.	+	.	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	start_codon	4053745	4053747	.	+	0	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4053745	4053904	0.55	+	0	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4053745	4053904	.	+	.	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4053905	4054029	.	+	.	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4054030	4054202	1	+	2	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4054030	4054202	.	+	.	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4054203	4054299	.	+	.	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4054300	4054539	1	+	0	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4054300	4054539	.	+	.	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4054540	4054641	.	+	.	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4054642	4054917	1	+	0	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4054642	4054917	.	+	.	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4054918	4055007	.	+	.	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4055008	4055174	1	+	0	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4055008	4055174	.	+	.	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4055175	4055253	.	+	.	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4055254	4055542	0.53	+	1	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4055254	4055542	.	+	.	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	stop_codon	4055543	4055545	.	+	0	transcript_id "Ledus.S4G056400.t2"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	transcript	4053745	4058931	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	start_codon	4053745	4053747	.	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4053745	4053904	0.49	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4053745	4053904	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4053905	4054029	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4054030	4054202	1	+	2	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4054030	4054202	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4054203	4054299	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4054300	4054539	0.99	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4054300	4054539	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4054540	4054641	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4054642	4054917	0.98	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4054642	4054917	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4054918	4055007	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4055008	4055174	1	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4055008	4055174	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4055175	4055253	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4055254	4055444	0.45	+	1	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4055254	4055444	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4055445	4055586	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4055587	4055724	0.19	+	2	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4055587	4055724	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4055725	4055808	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4055809	4056000	0.42	+	2	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4055809	4056000	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4056001	4056156	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4056157	4056293	0.38	+	2	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4056157	4056293	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4056294	4056454	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4056455	4056541	0.34	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4056455	4056541	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4056542	4056620	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4056621	4056749	1	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4056621	4056749	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4056750	4056842	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4056843	4056935	1	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4056843	4056935	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4056936	4057032	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4057033	4057164	1	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4057033	4057164	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4057165	4057265	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4057266	4057334	1	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4057266	4057334	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4057335	4057427	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4057428	4057511	1	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4057428	4057511	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4057512	4057636	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4057637	4057817	0.97	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4057637	4057817	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4057818	4057929	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4057930	4058049	1	+	2	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4057930	4058049	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4058050	4058167	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4058168	4058226	1	+	2	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4058168	4058226	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4058227	4058420	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4058421	4058555	1	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4058421	4058555	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4058556	4058648	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4058649	4058798	1	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4058649	4058798	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4058799	4058880	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4058881	4058931	1	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4058881	4058931	.	+	.	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	stop_codon	4058932	4058934	.	+	0	transcript_id "Ledus.S4G056400.t3"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	transcript	4055753	4056192	.	+	.	transcript_id "Ledus.S4G056400.t4"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	start_codon	4055753	4055755	.	+	0	transcript_id "Ledus.S4G056400.t4"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4055753	4056013	0.43	+	0	transcript_id "Ledus.S4G056400.t4"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4055753	4056013	.	+	.	transcript_id "Ledus.S4G056400.t4"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4056014	4056156	.	+	.	transcript_id "Ledus.S4G056400.t4"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4056157	4056192	0.98	+	0	transcript_id "Ledus.S4G056400.t4"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4056157	4056192	.	+	.	transcript_id "Ledus.S4G056400.t4"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	stop_codon	4056193	4056195	.	+	0	transcript_id "Ledus.S4G056400.t4"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	transcript	4053745	4056192	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	start_codon	4053745	4053747	.	+	0	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4053745	4053904	0.44	+	0	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4053745	4053904	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4053905	4054029	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4054030	4054202	1	+	2	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4054030	4054202	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4054203	4054299	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4054300	4054539	1	+	0	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4054300	4054539	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4054540	4054641	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4054642	4054917	0.96	+	0	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4054642	4054917	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4054918	4055007	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4055008	4055174	1	+	0	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4055008	4055174	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4055175	4055253	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4055254	4055444	0.35	+	1	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4055254	4055444	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4055445	4055586	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4055587	4055724	0.17	+	2	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4055587	4055724	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4055725	4055808	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4055809	4056059	0.25	+	2	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4055809	4056059	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	intron	4056060	4056156	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	CDS	4056157	4056192	0.55	+	0	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	exon	4056157	4056192	.	+	.	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
Ledus.S4	AUGUSTUS	stop_codon	4056193	4056195	.	+	0	transcript_id "Ledus.S4G056400.t5"; gene_id "Ledus.S4G056400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4696.t1 is derived from g2134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19101350	19105718	.	+	.	Ledus.S1G211700
Ledus.S1	AUGUSTUS	transcript	19101350	19105718	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	start_codon	19101350	19101352	.	+	0	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19101350	19101458	0.98	+	0	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19101350	19101458	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19101459	19101532	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19101533	19101662	1	+	2	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19101533	19101662	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19101663	19101758	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19101759	19101830	1	+	1	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19101759	19101830	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19101831	19101913	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19101914	19101988	1	+	1	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19101914	19101988	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19101989	19102074	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19102075	19102146	1	+	1	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19102075	19102146	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19102147	19102231	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19102232	19102393	1	+	1	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19102232	19102393	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19102394	19102488	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19102489	19102560	1	+	1	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19102489	19102560	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19102561	19102661	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19102662	19102733	1	+	1	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19102662	19102733	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19102734	19102816	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19102817	19102888	1	+	1	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19102817	19102888	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19102889	19102996	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19102997	19103065	1	+	1	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19102997	19103065	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19103066	19103157	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19103158	19103232	1	+	1	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19103158	19103232	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19103233	19103330	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19103331	19103402	1	+	1	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19103331	19103402	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19103403	19103519	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19103520	19103660	1	+	1	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19103520	19103660	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19103661	19103746	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19103747	19104210	0.98	+	1	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19103747	19104210	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19104211	19104290	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19104291	19104440	1	+	2	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19104291	19104440	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19104441	19104545	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19104546	19104908	1	+	2	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19104546	19104908	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19104909	19104999	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19105000	19105238	1	+	2	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19105000	19105238	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	intron	19105239	19105313	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	CDS	19105314	19105718	0.98	+	0	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	exon	19105314	19105718	.	+	.	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
Ledus.S1	AUGUSTUS	stop_codon	19105719	19105721	.	+	0	transcript_id "Ledus.S1G211700.t1"; gene_id "Ledus.S1G211700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg240.t1 is derived from g7101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1054712	1055500	.	+	.	Ledus.S2G012200
Ledus.S2	AUGUSTUS	transcript	1054712	1055500	.	+	.	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	start_codon	1054712	1054714	.	+	0	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	CDS	1054712	1054868	0.67	+	0	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	exon	1054712	1054868	.	+	.	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	intron	1054869	1054950	.	+	.	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	CDS	1054951	1055027	1	+	2	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	exon	1054951	1055027	.	+	.	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	intron	1055028	1055111	.	+	.	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	CDS	1055112	1055143	1	+	0	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	exon	1055112	1055143	.	+	.	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	intron	1055144	1055224	.	+	.	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	CDS	1055225	1055288	1	+	1	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	exon	1055225	1055288	.	+	.	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	intron	1055289	1055377	.	+	.	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	CDS	1055378	1055500	0.73	+	0	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	exon	1055378	1055500	.	+	.	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
Ledus.S2	AUGUSTUS	stop_codon	1055501	1055503	.	+	0	transcript_id "Ledus.S2G012200.t1"; gene_id "Ledus.S2G012200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8817.t1 is derived from g9847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2122934	2125728	.	+	.	Ledus.S3G029400
Ledus.S3	AUGUSTUS	transcript	2122934	2125728	.	+	.	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	start_codon	2122934	2122936	.	+	0	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	CDS	2122934	2124568	0.47	+	0	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	exon	2122934	2124568	.	+	.	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	intron	2124569	2124656	.	+	.	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	CDS	2124657	2124941	1	+	0	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	exon	2124657	2124941	.	+	.	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	intron	2124942	2125072	.	+	.	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	CDS	2125073	2125296	0.87	+	0	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	exon	2125073	2125296	.	+	.	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	intron	2125297	2125397	.	+	.	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	CDS	2125398	2125728	0.9	+	1	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	exon	2125398	2125728	.	+	.	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
Ledus.S3	AUGUSTUS	stop_codon	2125729	2125731	.	+	0	transcript_id "Ledus.S3G029400.t1"; gene_id "Ledus.S3G029400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11989.t1 is derived from g5608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8318144	8320183	.	+	.	Ledus.S4G114500
Ledus.S4	AUGUSTUS	transcript	8318144	8320183	.	+	.	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	start_codon	8318144	8318146	.	+	0	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	CDS	8318144	8318383	1	+	0	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	exon	8318144	8318383	.	+	.	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	intron	8318384	8318576	.	+	.	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	CDS	8318577	8318860	0.99	+	0	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	exon	8318577	8318860	.	+	.	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	intron	8318861	8319180	.	+	.	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	CDS	8319181	8319495	1	+	1	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	exon	8319181	8319495	.	+	.	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	intron	8319496	8319695	.	+	.	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	CDS	8319696	8319811	0.96	+	1	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	exon	8319696	8319811	.	+	.	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	intron	8319812	8319935	.	+	.	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	CDS	8319936	8320183	0.97	+	2	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	exon	8319936	8320183	.	+	.	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
Ledus.S4	AUGUSTUS	stop_codon	8320184	8320186	.	+	0	transcript_id "Ledus.S4G114500.t1"; gene_id "Ledus.S4G114500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5801.t1 is derived from g3243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26999117	26999353	.	+	.	Ledus.S1G322200
Ledus.S1	AUGUSTUS	transcript	26999117	26999353	.	+	.	transcript_id "Ledus.S1G322200.t1"; gene_id "Ledus.S1G322200"
Ledus.S1	AUGUSTUS	start_codon	26999117	26999119	.	+	0	transcript_id "Ledus.S1G322200.t1"; gene_id "Ledus.S1G322200"
Ledus.S1	AUGUSTUS	CDS	26999117	26999353	0.52	+	0	transcript_id "Ledus.S1G322200.t1"; gene_id "Ledus.S1G322200"
Ledus.S1	AUGUSTUS	exon	26999117	26999353	.	+	.	transcript_id "Ledus.S1G322200.t1"; gene_id "Ledus.S1G322200"
Ledus.S1	AUGUSTUS	stop_codon	26999354	26999356	.	+	0	transcript_id "Ledus.S1G322200.t1"; gene_id "Ledus.S1G322200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12537.t1 is derived from g6159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12792927	12795464	.	+	.	Ledus.S4G169300
Ledus.S4	AUGUSTUS	transcript	12792927	12795464	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	start_codon	12792927	12792929	.	+	0	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	CDS	12792927	12793595	0.48	+	0	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	exon	12792927	12793595	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	intron	12793596	12793693	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	CDS	12793694	12793831	1	+	0	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	exon	12793694	12793831	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	intron	12793832	12793946	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	CDS	12793947	12794192	1	+	0	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	exon	12793947	12794192	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	intron	12794193	12794276	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	CDS	12794277	12794390	0.95	+	0	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	exon	12794277	12794390	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	intron	12794391	12794498	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	CDS	12794499	12794550	0.31	+	0	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	exon	12794499	12794550	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	intron	12794551	12794722	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	CDS	12794723	12795023	0.75	+	2	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	exon	12794723	12795023	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	intron	12795024	12795142	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	CDS	12795143	12795464	0.41	+	1	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	exon	12795143	12795464	.	+	.	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
Ledus.S4	AUGUSTUS	stop_codon	12795465	12795467	.	+	0	transcript_id "Ledus.S4G169300.t1"; gene_id "Ledus.S4G169300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9460.t1 is derived from g10490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7138140	7140711	.	+	.	Ledus.S3G093700
Ledus.S3	AUGUSTUS	transcript	7138140	7140711	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	start_codon	7138140	7138142	.	+	0	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	CDS	7138140	7138384	0.39	+	0	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	exon	7138140	7138384	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	intron	7138385	7138462	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	CDS	7138463	7139302	0.99	+	1	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	exon	7138463	7139302	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	intron	7139303	7139390	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	CDS	7139391	7139455	1	+	1	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	exon	7139391	7139455	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	intron	7139456	7139703	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	CDS	7139704	7139759	0.77	+	2	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	exon	7139704	7139759	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	intron	7139760	7139929	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	CDS	7139930	7140098	1	+	0	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	exon	7139930	7140098	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	intron	7140099	7140187	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	CDS	7140188	7140261	1	+	2	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	exon	7140188	7140261	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	intron	7140262	7140354	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	CDS	7140355	7140433	1	+	0	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	exon	7140355	7140433	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	intron	7140434	7140517	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	CDS	7140518	7140711	1	+	2	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	exon	7140518	7140711	.	+	.	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
Ledus.S3	AUGUSTUS	stop_codon	7140712	7140714	.	+	0	transcript_id "Ledus.S3G093700.t1"; gene_id "Ledus.S3G093700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4130.t1 is derived from g1566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14857662	14858177	.	-	.	Ledus.S1G155100
Ledus.S1	AUGUSTUS	transcript	14857662	14858177	.	-	.	transcript_id "Ledus.S1G155100.t1"; gene_id "Ledus.S1G155100"
Ledus.S1	AUGUSTUS	stop_codon	14857659	14857661	.	-	0	transcript_id "Ledus.S1G155100.t1"; gene_id "Ledus.S1G155100"
Ledus.S1	AUGUSTUS	CDS	14857662	14858177	0.83	-	0	transcript_id "Ledus.S1G155100.t1"; gene_id "Ledus.S1G155100"
Ledus.S1	AUGUSTUS	exon	14857662	14858177	.	-	.	transcript_id "Ledus.S1G155100.t1"; gene_id "Ledus.S1G155100"
Ledus.S1	AUGUSTUS	start_codon	14858175	14858177	.	-	0	transcript_id "Ledus.S1G155100.t1"; gene_id "Ledus.S1G155100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12675.t1 is derived from g6297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13827223	13831188	.	-	.	Ledus.S4G183100
Ledus.S4	AUGUSTUS	transcript	13827223	13831188	.	-	.	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	stop_codon	13827220	13827222	.	-	0	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	CDS	13827223	13830633	0.95	-	0	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	exon	13827223	13830633	.	-	.	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	intron	13830634	13830717	.	-	.	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	CDS	13830718	13830797	1	-	2	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	exon	13830718	13830797	.	-	.	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	intron	13830798	13830876	.	-	.	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	CDS	13830877	13831009	1	-	0	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	exon	13830877	13831009	.	-	.	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	intron	13831010	13831095	.	-	.	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	CDS	13831096	13831188	0.74	-	0	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	exon	13831096	13831188	.	-	.	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
Ledus.S4	AUGUSTUS	start_codon	13831186	13831188	.	-	0	transcript_id "Ledus.S4G183100.t1"; gene_id "Ledus.S4G183100"
# This transcript jg12248.t2 is derived from g5868.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12249.t1 is derived from g5869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10635325	10636018	.	+	.	Ledus.S4G140500
Ledus.S4	AUGUSTUS	transcript	10635325	10636018	.	+	.	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	start_codon	10635325	10635327	.	+	0	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	CDS	10635325	10635360	0.81	+	0	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	exon	10635325	10635360	.	+	.	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	intron	10635361	10635428	.	+	.	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	CDS	10635429	10635560	0.93	+	0	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	exon	10635429	10635560	.	+	.	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	intron	10635561	10635654	.	+	.	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	CDS	10635655	10635791	0.68	+	0	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	exon	10635655	10635791	.	+	.	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	intron	10635792	10636017	.	+	.	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	CDS	10636018	10636018	0.85	+	1	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	exon	10636018	10636018	.	+	.	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
Ledus.S4	AUGUSTUS	stop_codon	10636019	10636021	.	+	0	transcript_id "Ledus.S4G140500.t1"; gene_id "Ledus.S4G140500"
# This transcript jg4614.t2 is derived from g2051.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4615.t1 is derived from g2052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18255509	18256219	.	-	.	Ledus.S1G203600
Ledus.S1	AUGUSTUS	transcript	18255509	18256219	.	-	.	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	stop_codon	18255506	18255508	.	-	0	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	CDS	18255509	18255586	0.89	-	0	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	exon	18255509	18255586	.	-	.	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	intron	18255587	18255688	.	-	.	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	CDS	18255689	18255847	0.93	-	0	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	exon	18255689	18255847	.	-	.	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	intron	18255848	18256016	.	-	.	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	CDS	18256017	18256092	1	-	1	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	exon	18256017	18256092	.	-	.	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	intron	18256093	18256190	.	-	.	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	CDS	18256191	18256219	0.55	-	0	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	exon	18256191	18256219	.	-	.	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
Ledus.S1	AUGUSTUS	start_codon	18256217	18256219	.	-	0	transcript_id "Ledus.S1G203600.t1"; gene_id "Ledus.S1G203600"
# This transcript jg12444.t2 is derived from g6065.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12445.t1 is derived from g6066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12037502	12038918	.	+	.	Ledus.S4G160100
Ledus.S4	AUGUSTUS	transcript	12037502	12038918	.	+	.	transcript_id "Ledus.S4G160100.t1"; gene_id "Ledus.S4G160100"
Ledus.S4	AUGUSTUS	start_codon	12037502	12037504	.	+	0	transcript_id "Ledus.S4G160100.t1"; gene_id "Ledus.S4G160100"
Ledus.S4	AUGUSTUS	CDS	12037502	12037797	0.99	+	0	transcript_id "Ledus.S4G160100.t1"; gene_id "Ledus.S4G160100"
Ledus.S4	AUGUSTUS	exon	12037502	12037797	.	+	.	transcript_id "Ledus.S4G160100.t1"; gene_id "Ledus.S4G160100"
Ledus.S4	AUGUSTUS	intron	12037798	12037880	.	+	.	transcript_id "Ledus.S4G160100.t1"; gene_id "Ledus.S4G160100"
Ledus.S4	AUGUSTUS	CDS	12037881	12038127	0.67	+	1	transcript_id "Ledus.S4G160100.t1"; gene_id "Ledus.S4G160100"
Ledus.S4	AUGUSTUS	exon	12037881	12038127	.	+	.	transcript_id "Ledus.S4G160100.t1"; gene_id "Ledus.S4G160100"
Ledus.S4	AUGUSTUS	intron	12038128	12038261	.	+	.	transcript_id "Ledus.S4G160100.t1"; gene_id "Ledus.S4G160100"
Ledus.S4	AUGUSTUS	CDS	12038262	12038918	1	+	0	transcript_id "Ledus.S4G160100.t1"; gene_id "Ledus.S4G160100"
Ledus.S4	AUGUSTUS	exon	12038262	12038918	.	+	.	transcript_id "Ledus.S4G160100.t1"; gene_id "Ledus.S4G160100"
Ledus.S4	AUGUSTUS	stop_codon	12038919	12038921	.	+	0	transcript_id "Ledus.S4G160100.t1"; gene_id "Ledus.S4G160100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12521.t1 is derived from g6142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12715093	12715678	.	-	.	Ledus.S4G167700
Ledus.S4	AUGUSTUS	transcript	12715093	12715678	.	-	.	transcript_id "Ledus.S4G167700.t1"; gene_id "Ledus.S4G167700"
Ledus.S4	AUGUSTUS	stop_codon	12715090	12715092	.	-	0	transcript_id "Ledus.S4G167700.t1"; gene_id "Ledus.S4G167700"
Ledus.S4	AUGUSTUS	CDS	12715093	12715434	1	-	0	transcript_id "Ledus.S4G167700.t1"; gene_id "Ledus.S4G167700"
Ledus.S4	AUGUSTUS	exon	12715093	12715434	.	-	.	transcript_id "Ledus.S4G167700.t1"; gene_id "Ledus.S4G167700"
Ledus.S4	AUGUSTUS	intron	12715435	12715537	.	-	.	transcript_id "Ledus.S4G167700.t1"; gene_id "Ledus.S4G167700"
Ledus.S4	AUGUSTUS	CDS	12715538	12715678	0.84	-	0	transcript_id "Ledus.S4G167700.t1"; gene_id "Ledus.S4G167700"
Ledus.S4	AUGUSTUS	exon	12715538	12715678	.	-	.	transcript_id "Ledus.S4G167700.t1"; gene_id "Ledus.S4G167700"
Ledus.S4	AUGUSTUS	start_codon	12715676	12715678	.	-	0	transcript_id "Ledus.S4G167700.t1"; gene_id "Ledus.S4G167700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10657.t1 is derived from g11687.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16885479	16886195	.	-	.	Ledus.S3G213400
Ledus.S3	AUGUSTUS	transcript	16885479	16886195	.	-	.	transcript_id "Ledus.S3G213400.t1"; gene_id "Ledus.S3G213400"
Ledus.S3	AUGUSTUS	stop_codon	16885476	16885478	.	-	0	transcript_id "Ledus.S3G213400.t1"; gene_id "Ledus.S3G213400"
Ledus.S3	AUGUSTUS	CDS	16885479	16886195	0.44	-	0	transcript_id "Ledus.S3G213400.t1"; gene_id "Ledus.S3G213400"
Ledus.S3	AUGUSTUS	exon	16885479	16886195	.	-	.	transcript_id "Ledus.S3G213400.t1"; gene_id "Ledus.S3G213400"
Ledus.S3	AUGUSTUS	start_codon	16886193	16886195	.	-	0	transcript_id "Ledus.S3G213400.t1"; gene_id "Ledus.S3G213400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7131.t1 is derived from g6662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1704882	1705599	.	-	.	Ledus.C7G019200
Ledus.C7	AUGUSTUS	transcript	1704882	1705599	.	-	.	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	stop_codon	1704879	1704881	.	-	0	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	CDS	1704882	1704956	0.97	-	0	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	exon	1704882	1704956	.	-	.	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	intron	1704957	1705046	.	-	.	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	CDS	1705047	1705103	1	-	0	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	exon	1705047	1705103	.	-	.	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	intron	1705104	1705186	.	-	.	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	CDS	1705187	1705282	1	-	0	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	exon	1705187	1705282	.	-	.	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	intron	1705283	1705354	.	-	.	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	CDS	1705355	1705395	1	-	2	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	exon	1705355	1705395	.	-	.	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	intron	1705396	1705478	.	-	.	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	CDS	1705479	1705599	1	-	0	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	exon	1705479	1705599	.	-	.	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
Ledus.C7	AUGUSTUS	start_codon	1705597	1705599	.	-	0	transcript_id "Ledus.C7G019200.t1"; gene_id "Ledus.C7G019200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3364.t1 is derived from g799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7867527	7868616	.	+	.	Ledus.S1G078500
Ledus.S1	AUGUSTUS	transcript	7867527	7868616	.	+	.	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	start_codon	7867527	7867529	.	+	0	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	CDS	7867527	7867601	0.88	+	0	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	exon	7867527	7867601	.	+	.	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	intron	7867602	7867687	.	+	.	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	CDS	7867688	7867828	1	+	0	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	exon	7867688	7867828	.	+	.	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	intron	7867829	7867916	.	+	.	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	CDS	7867917	7868171	1	+	0	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	exon	7867917	7868171	.	+	.	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	intron	7868172	7868251	.	+	.	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	CDS	7868252	7868333	0.91	+	0	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	exon	7868252	7868333	.	+	.	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	intron	7868334	7868446	.	+	.	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	CDS	7868447	7868616	0.92	+	2	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	exon	7868447	7868616	.	+	.	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
Ledus.S1	AUGUSTUS	stop_codon	7868617	7868619	.	+	0	transcript_id "Ledus.S1G078500.t1"; gene_id "Ledus.S1G078500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12982.t1 is derived from g6792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1576268	1576465	.	+	.	Ledus.S6G004400
Ledus.S6	AUGUSTUS	transcript	1576268	1576465	.	+	.	transcript_id "Ledus.S6G004400.t1"; gene_id "Ledus.S6G004400"
Ledus.S6	AUGUSTUS	start_codon	1576268	1576270	.	+	0	transcript_id "Ledus.S6G004400.t1"; gene_id "Ledus.S6G004400"
Ledus.S6	AUGUSTUS	CDS	1576268	1576465	1	+	0	transcript_id "Ledus.S6G004400.t1"; gene_id "Ledus.S6G004400"
Ledus.S6	AUGUSTUS	exon	1576268	1576465	.	+	.	transcript_id "Ledus.S6G004400.t1"; gene_id "Ledus.S6G004400"
Ledus.S6	AUGUSTUS	stop_codon	1576466	1576468	.	+	0	transcript_id "Ledus.S6G004400.t1"; gene_id "Ledus.S6G004400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8309.t1 is derived from g12981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10648339	10650794	.	+	.	Ledus.S5G108700
Ledus.S5	AUGUSTUS	transcript	10648339	10650794	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	start_codon	10648339	10648341	.	+	0	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	CDS	10648339	10648637	0.96	+	0	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	exon	10648339	10648637	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	intron	10648638	10648734	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	CDS	10648735	10648822	1	+	1	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	exon	10648735	10648822	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	intron	10648823	10649303	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	CDS	10649304	10649417	1	+	0	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	exon	10649304	10649417	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	intron	10649418	10649660	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	CDS	10649661	10649743	1	+	0	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	exon	10649661	10649743	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	intron	10649744	10649895	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	CDS	10649896	10650019	0.98	+	1	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	exon	10649896	10650019	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	intron	10650020	10650140	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	CDS	10650141	10650232	1	+	0	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	exon	10650141	10650232	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	intron	10650233	10650316	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	CDS	10650317	10650382	1	+	1	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	exon	10650317	10650382	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	intron	10650383	10650485	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	CDS	10650486	10650579	0.97	+	1	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	exon	10650486	10650579	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	intron	10650580	10650680	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	CDS	10650681	10650794	0.94	+	0	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	exon	10650681	10650794	.	+	.	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
Ledus.S5	AUGUSTUS	stop_codon	10650795	10650797	.	+	0	transcript_id "Ledus.S5G108700.t1"; gene_id "Ledus.S5G108700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2791.t1 is derived from g225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3805139	3805663	.	+	.	Ledus.S1G021200
Ledus.S1	AUGUSTUS	transcript	3805139	3805663	.	+	.	transcript_id "Ledus.S1G021200.t1"; gene_id "Ledus.S1G021200"
Ledus.S1	AUGUSTUS	start_codon	3805139	3805141	.	+	0	transcript_id "Ledus.S1G021200.t1"; gene_id "Ledus.S1G021200"
Ledus.S1	AUGUSTUS	CDS	3805139	3805663	0.99	+	0	transcript_id "Ledus.S1G021200.t1"; gene_id "Ledus.S1G021200"
Ledus.S1	AUGUSTUS	exon	3805139	3805663	.	+	.	transcript_id "Ledus.S1G021200.t1"; gene_id "Ledus.S1G021200"
Ledus.S1	AUGUSTUS	stop_codon	3805664	3805666	.	+	0	transcript_id "Ledus.S1G021200.t1"; gene_id "Ledus.S1G021200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6720.t1 is derived from g4163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33522428	33523600	.	+	.	Ledus.S1G414100
Ledus.S1	AUGUSTUS	transcript	33522428	33523600	.	+	.	transcript_id "Ledus.S1G414100.t1"; gene_id "Ledus.S1G414100"
Ledus.S1	AUGUSTUS	start_codon	33522428	33522430	.	+	0	transcript_id "Ledus.S1G414100.t1"; gene_id "Ledus.S1G414100"
Ledus.S1	AUGUSTUS	CDS	33522428	33523600	1	+	0	transcript_id "Ledus.S1G414100.t1"; gene_id "Ledus.S1G414100"
Ledus.S1	AUGUSTUS	exon	33522428	33523600	.	+	.	transcript_id "Ledus.S1G414100.t1"; gene_id "Ledus.S1G414100"
Ledus.S1	AUGUSTUS	stop_codon	33523601	33523603	.	+	0	transcript_id "Ledus.S1G414100.t1"; gene_id "Ledus.S1G414100"
# This transcript jg5741.t2 is derived from g3180.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5742.t1 is derived from g3181.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26429623	26435033	.	-	.	Ledus.S1G316300
Ledus.S1	AUGUSTUS	transcript	26429623	26435033	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	stop_codon	26429620	26429622	.	-	0	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26429623	26430024	1	-	0	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26429623	26430024	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26430025	26430104	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26430105	26430189	1	-	1	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26430105	26430189	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26430190	26430352	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26430353	26430505	1	-	1	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26430353	26430505	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26430506	26430685	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26430686	26430858	1	-	0	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26430686	26430858	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26430859	26431071	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26431072	26431260	1	-	0	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26431072	26431260	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26431261	26431511	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26431512	26431718	1	-	0	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26431512	26431718	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26431719	26431841	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26431842	26432348	0.99	-	0	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26431842	26432348	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26432349	26432549	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26432550	26432747	1	-	0	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26432550	26432747	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26432748	26432839	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26432840	26433151	0.5	-	0	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26432840	26433151	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26433152	26433249	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26433250	26433421	0.96	-	1	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26433250	26433421	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26433422	26433563	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26433564	26433573	0.91	-	2	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26433564	26433573	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26433574	26433832	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26433833	26433894	0.97	-	1	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26433833	26433894	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26433895	26434038	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26434039	26434148	1	-	0	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26434039	26434148	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26434149	26434370	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26434371	26434457	1	-	0	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26434371	26434457	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26434458	26434649	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26434650	26435033	0.99	-	0	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26434650	26435033	.	-	.	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	start_codon	26435031	26435033	.	-	0	transcript_id "Ledus.S1G316300.t1"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	transcript	26429623	26435033	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	stop_codon	26429620	26429622	.	-	0	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26429623	26430024	0.99	-	0	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26429623	26430024	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26430025	26430104	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26430105	26430189	1	-	1	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26430105	26430189	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26430190	26430352	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26430353	26430505	1	-	1	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26430353	26430505	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26430506	26430685	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26430686	26430858	1	-	0	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26430686	26430858	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26430859	26431071	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26431072	26431260	1	-	0	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26431072	26431260	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26431261	26431511	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26431512	26431718	1	-	0	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26431512	26431718	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26431719	26431841	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26431842	26432348	0.97	-	0	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26431842	26432348	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26432349	26432549	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26432550	26432747	1	-	0	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26432550	26432747	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26432748	26432839	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26432840	26433151	0.56	-	0	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26432840	26433151	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26433152	26433249	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26433250	26433421	0.92	-	1	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26433250	26433421	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26433422	26433522	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26433523	26433573	0.66	-	1	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26433523	26433573	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26433574	26433863	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26433864	26433947	0.41	-	1	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26433864	26433947	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26433948	26434038	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26434039	26434148	0.83	-	0	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26434039	26434148	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26434149	26434370	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26434371	26434457	1	-	0	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26434371	26434457	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	intron	26434458	26434649	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	CDS	26434650	26435033	0.99	-	0	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	exon	26434650	26435033	.	-	.	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
Ledus.S1	AUGUSTUS	start_codon	26435031	26435033	.	-	0	transcript_id "Ledus.S1G316300.t2"; gene_id "Ledus.S1G316300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3949.t1 is derived from g1385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13698201	13698933	.	+	.	Ledus.S1G137000
Ledus.S1	AUGUSTUS	transcript	13698201	13698933	.	+	.	transcript_id "Ledus.S1G137000.t1"; gene_id "Ledus.S1G137000"
Ledus.S1	AUGUSTUS	start_codon	13698201	13698203	.	+	0	transcript_id "Ledus.S1G137000.t1"; gene_id "Ledus.S1G137000"
Ledus.S1	AUGUSTUS	CDS	13698201	13698402	0.99	+	0	transcript_id "Ledus.S1G137000.t1"; gene_id "Ledus.S1G137000"
Ledus.S1	AUGUSTUS	exon	13698201	13698402	.	+	.	transcript_id "Ledus.S1G137000.t1"; gene_id "Ledus.S1G137000"
Ledus.S1	AUGUSTUS	intron	13698403	13698481	.	+	.	transcript_id "Ledus.S1G137000.t1"; gene_id "Ledus.S1G137000"
Ledus.S1	AUGUSTUS	CDS	13698482	13698933	1	+	2	transcript_id "Ledus.S1G137000.t1"; gene_id "Ledus.S1G137000"
Ledus.S1	AUGUSTUS	exon	13698482	13698933	.	+	.	transcript_id "Ledus.S1G137000.t1"; gene_id "Ledus.S1G137000"
Ledus.S1	AUGUSTUS	stop_codon	13698934	13698936	.	+	0	transcript_id "Ledus.S1G137000.t1"; gene_id "Ledus.S1G137000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13163.t1 is derived from g6973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7797402	7797974	.	-	.	Ledus.S6G022500
Ledus.S6	AUGUSTUS	transcript	7797402	7797974	.	-	.	transcript_id "Ledus.S6G022500.t1"; gene_id "Ledus.S6G022500"
Ledus.S6	AUGUSTUS	stop_codon	7797399	7797401	.	-	0	transcript_id "Ledus.S6G022500.t1"; gene_id "Ledus.S6G022500"
Ledus.S6	AUGUSTUS	CDS	7797402	7797974	0.61	-	0	transcript_id "Ledus.S6G022500.t1"; gene_id "Ledus.S6G022500"
Ledus.S6	AUGUSTUS	exon	7797402	7797974	.	-	.	transcript_id "Ledus.S6G022500.t1"; gene_id "Ledus.S6G022500"
Ledus.S6	AUGUSTUS	start_codon	7797972	7797974	.	-	0	transcript_id "Ledus.S6G022500.t1"; gene_id "Ledus.S6G022500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg250.t1 is derived from g7111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1130266	1131867	.	+	.	Ledus.S2G013200
Ledus.S2	AUGUSTUS	transcript	1130266	1131867	.	+	.	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	start_codon	1130266	1130268	.	+	0	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	CDS	1130266	1130510	0.53	+	0	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	exon	1130266	1130510	.	+	.	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	intron	1130511	1130642	.	+	.	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	CDS	1130643	1130862	0.88	+	1	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	exon	1130643	1130862	.	+	.	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	intron	1130863	1130957	.	+	.	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	CDS	1130958	1131178	1	+	0	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	exon	1130958	1131178	.	+	.	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	intron	1131179	1131259	.	+	.	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	CDS	1131260	1131380	0.52	+	1	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	exon	1131260	1131380	.	+	.	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	intron	1131381	1131459	.	+	.	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	CDS	1131460	1131867	0.76	+	0	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	exon	1131460	1131867	.	+	.	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
Ledus.S2	AUGUSTUS	stop_codon	1131868	1131870	.	+	0	transcript_id "Ledus.S2G013200.t1"; gene_id "Ledus.S2G013200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2991.t1 is derived from g426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5187896	5190238	.	-	.	Ledus.S1G041200
Ledus.S1	AUGUSTUS	transcript	5187896	5190238	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	stop_codon	5187893	5187895	.	-	0	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	CDS	5187896	5188075	1	-	0	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	exon	5187896	5188075	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	intron	5188076	5188212	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	CDS	5188213	5188422	0.97	-	0	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	exon	5188213	5188422	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	intron	5188423	5188534	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	CDS	5188535	5188664	1	-	1	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	exon	5188535	5188664	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	intron	5188665	5188755	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	CDS	5188756	5188926	1	-	1	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	exon	5188756	5188926	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	intron	5188927	5189026	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	CDS	5189027	5189149	1	-	1	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	exon	5189027	5189149	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	intron	5189150	5189273	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	CDS	5189274	5189378	1	-	1	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	exon	5189274	5189378	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	intron	5189379	5189471	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	CDS	5189472	5190238	0.22	-	0	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	exon	5189472	5190238	.	-	.	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
Ledus.S1	AUGUSTUS	start_codon	5190236	5190238	.	-	0	transcript_id "Ledus.S1G041200.t1"; gene_id "Ledus.S1G041200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6507.t1 is derived from g3950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31766808	31767569	.	-	.	Ledus.S1G392800
Ledus.S1	AUGUSTUS	transcript	31766808	31767569	.	-	.	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	stop_codon	31766805	31766807	.	-	0	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	CDS	31766808	31766811	0.96	-	1	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	exon	31766808	31766811	.	-	.	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	intron	31766812	31767016	.	-	.	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	CDS	31767017	31767126	0.96	-	0	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	exon	31767017	31767126	.	-	.	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	intron	31767127	31767290	.	-	.	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	CDS	31767291	31767405	0.68	-	1	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	exon	31767291	31767405	.	-	.	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	intron	31767406	31767546	.	-	.	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	CDS	31767547	31767569	0.65	-	0	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	exon	31767547	31767569	.	-	.	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
Ledus.S1	AUGUSTUS	start_codon	31767567	31767569	.	-	0	transcript_id "Ledus.S1G392800.t1"; gene_id "Ledus.S1G392800"
# This transcript jg4944.t2 is derived from g2382.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4945.t1 is derived from g2383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20825880	20828030	.	-	.	Ledus.S1G236600
Ledus.S1	AUGUSTUS	transcript	20825880	20828030	.	-	.	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	stop_codon	20825877	20825879	.	-	0	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	CDS	20825880	20825917	1	-	2	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	exon	20825880	20825917	.	-	.	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	intron	20825918	20826012	.	-	.	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	CDS	20826013	20826303	1	-	2	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	exon	20826013	20826303	.	-	.	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	intron	20826304	20826390	.	-	.	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	CDS	20826391	20826817	1	-	0	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	exon	20826391	20826817	.	-	.	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	intron	20826818	20826908	.	-	.	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	CDS	20826909	20827157	1	-	0	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	exon	20826909	20827157	.	-	.	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	intron	20827158	20827241	.	-	.	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	CDS	20827242	20827543	0.94	-	2	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	exon	20827242	20827543	.	-	.	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	intron	20827544	20827642	.	-	.	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	CDS	20827643	20828030	0.88	-	0	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	exon	20827643	20828030	.	-	.	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
Ledus.S1	AUGUSTUS	start_codon	20828028	20828030	.	-	0	transcript_id "Ledus.S1G236600.t1"; gene_id "Ledus.S1G236600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6023.t1 is derived from g3466.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28473532	28475605	.	-	.	Ledus.S1G344400
Ledus.S1	AUGUSTUS	transcript	28473532	28475605	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	stop_codon	28473529	28473531	.	-	0	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	CDS	28473532	28473642	0.47	-	0	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	exon	28473532	28473642	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	intron	28473643	28473747	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	CDS	28473748	28473817	0.62	-	1	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	exon	28473748	28473817	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	intron	28473818	28473938	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	CDS	28473939	28474054	0.65	-	0	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	exon	28473939	28474054	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	intron	28474055	28474187	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	CDS	28474188	28474239	0.73	-	1	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	exon	28474188	28474239	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	intron	28474240	28474516	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	CDS	28474517	28474595	0.86	-	2	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	exon	28474517	28474595	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	intron	28474596	28474817	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	CDS	28474818	28474883	1	-	2	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	exon	28474818	28474883	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	intron	28474884	28475010	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	CDS	28475011	28475095	1	-	0	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	exon	28475011	28475095	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	intron	28475096	28475235	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	CDS	28475236	28475298	1	-	0	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	exon	28475236	28475298	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	intron	28475299	28475467	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	CDS	28475468	28475605	0.94	-	0	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	exon	28475468	28475605	.	-	.	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
Ledus.S1	AUGUSTUS	start_codon	28475603	28475605	.	-	0	transcript_id "Ledus.S1G344400.t1"; gene_id "Ledus.S1G344400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11062.t1 is derived from g4680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1534048	1535658	.	-	.	Ledus.S4G021800
Ledus.S4	AUGUSTUS	transcript	1534048	1535658	.	-	.	transcript_id "Ledus.S4G021800.t1"; gene_id "Ledus.S4G021800"
Ledus.S4	AUGUSTUS	stop_codon	1534045	1534047	.	-	0	transcript_id "Ledus.S4G021800.t1"; gene_id "Ledus.S4G021800"
Ledus.S4	AUGUSTUS	CDS	1534048	1534287	1	-	0	transcript_id "Ledus.S4G021800.t1"; gene_id "Ledus.S4G021800"
Ledus.S4	AUGUSTUS	exon	1534048	1534287	.	-	.	transcript_id "Ledus.S4G021800.t1"; gene_id "Ledus.S4G021800"
Ledus.S4	AUGUSTUS	intron	1534288	1534437	.	-	.	transcript_id "Ledus.S4G021800.t1"; gene_id "Ledus.S4G021800"
Ledus.S4	AUGUSTUS	CDS	1534438	1534963	0.99	-	1	transcript_id "Ledus.S4G021800.t1"; gene_id "Ledus.S4G021800"
Ledus.S4	AUGUSTUS	exon	1534438	1534963	.	-	.	transcript_id "Ledus.S4G021800.t1"; gene_id "Ledus.S4G021800"
Ledus.S4	AUGUSTUS	intron	1534964	1535221	.	-	.	transcript_id "Ledus.S4G021800.t1"; gene_id "Ledus.S4G021800"
Ledus.S4	AUGUSTUS	CDS	1535222	1535658	0.99	-	0	transcript_id "Ledus.S4G021800.t1"; gene_id "Ledus.S4G021800"
Ledus.S4	AUGUSTUS	exon	1535222	1535658	.	-	.	transcript_id "Ledus.S4G021800.t1"; gene_id "Ledus.S4G021800"
Ledus.S4	AUGUSTUS	start_codon	1535656	1535658	.	-	0	transcript_id "Ledus.S4G021800.t1"; gene_id "Ledus.S4G021800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7332.t1 is derived from g12003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1234999	1239136	.	-	.	Ledus.S5G011000
Ledus.S5	AUGUSTUS	transcript	1234999	1239136	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	stop_codon	1234996	1234998	.	-	0	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1234999	1235078	0.71	-	2	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1234999	1235078	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1235079	1235271	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1235272	1235338	0.81	-	0	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1235272	1235338	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1235339	1235482	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1235483	1236203	0.95	-	1	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1235483	1236203	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1236204	1236379	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1236380	1236456	0.95	-	0	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1236380	1236456	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1236457	1236562	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1236563	1236657	0.24	-	2	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1236563	1236657	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1236658	1236782	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1236783	1236916	0.72	-	1	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1236783	1236916	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1236917	1236998	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1236999	1237072	1	-	0	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1236999	1237072	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1237073	1237265	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1237266	1237405	0.43	-	2	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1237266	1237405	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1237406	1237509	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1237510	1237597	0.5	-	0	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1237510	1237597	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1237598	1237689	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1237690	1237826	0.88	-	2	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1237690	1237826	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1237827	1237932	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1237933	1237989	0.98	-	2	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1237933	1237989	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1237990	1238116	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1238117	1238291	1	-	0	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1238117	1238291	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1238292	1238377	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1238378	1238488	1	-	0	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1238378	1238488	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1238489	1238580	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1238581	1238679	1	-	0	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1238581	1238679	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1238680	1238761	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1238762	1238806	1	-	0	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1238762	1238806	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1238807	1238890	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1238891	1238986	0.96	-	0	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1238891	1238986	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	intron	1238987	1239109	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	CDS	1239110	1239136	0.42	-	0	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	exon	1239110	1239136	.	-	.	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
Ledus.S5	AUGUSTUS	start_codon	1239134	1239136	.	-	0	transcript_id "Ledus.S5G011000.t1"; gene_id "Ledus.S5G011000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7183.t1 is derived from g6714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2027711	2029168	.	+	.	Ledus.C7G024400
Ledus.C7	AUGUSTUS	transcript	2028758	2029168	.	+	.	transcript_id "Ledus.C7G024400.t1"; gene_id "Ledus.C7G024400"
Ledus.C7	AUGUSTUS	start_codon	2028758	2028760	.	+	0	transcript_id "Ledus.C7G024400.t1"; gene_id "Ledus.C7G024400"
Ledus.C7	AUGUSTUS	CDS	2028758	2029168	0.99	+	0	transcript_id "Ledus.C7G024400.t1"; gene_id "Ledus.C7G024400"
Ledus.C7	AUGUSTUS	exon	2028758	2029168	.	+	.	transcript_id "Ledus.C7G024400.t1"; gene_id "Ledus.C7G024400"
Ledus.C7	AUGUSTUS	stop_codon	2029169	2029171	.	+	0	transcript_id "Ledus.C7G024400.t1"; gene_id "Ledus.C7G024400"
Ledus.C7	AUGUSTUS	transcript	2027711	2029168	.	+	.	transcript_id "Ledus.C7G024400.t2"; gene_id "Ledus.C7G024400"
Ledus.C7	AUGUSTUS	start_codon	2027711	2027713	.	+	0	transcript_id "Ledus.C7G024400.t2"; gene_id "Ledus.C7G024400"
Ledus.C7	AUGUSTUS	CDS	2027711	2029168	0.55	+	0	transcript_id "Ledus.C7G024400.t2"; gene_id "Ledus.C7G024400"
Ledus.C7	AUGUSTUS	exon	2027711	2029168	.	+	.	transcript_id "Ledus.C7G024400.t2"; gene_id "Ledus.C7G024400"
Ledus.C7	AUGUSTUS	stop_codon	2029169	2029171	.	+	0	transcript_id "Ledus.C7G024400.t2"; gene_id "Ledus.C7G024400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6912.t1 is derived from g4356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35132842	35133249	.	-	.	Ledus.S1G433300
Ledus.S1	AUGUSTUS	transcript	35132842	35133249	.	-	.	transcript_id "Ledus.S1G433300.t1"; gene_id "Ledus.S1G433300"
Ledus.S1	AUGUSTUS	stop_codon	35132839	35132841	.	-	0	transcript_id "Ledus.S1G433300.t1"; gene_id "Ledus.S1G433300"
Ledus.S1	AUGUSTUS	CDS	35132842	35133249	0.8	-	0	transcript_id "Ledus.S1G433300.t1"; gene_id "Ledus.S1G433300"
Ledus.S1	AUGUSTUS	exon	35132842	35133249	.	-	.	transcript_id "Ledus.S1G433300.t1"; gene_id "Ledus.S1G433300"
Ledus.S1	AUGUSTUS	start_codon	35133247	35133249	.	-	0	transcript_id "Ledus.S1G433300.t1"; gene_id "Ledus.S1G433300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6522.t1 is derived from g3965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31868780	31869607	.	+	.	Ledus.S1G394300
Ledus.S1	AUGUSTUS	transcript	31868780	31869607	.	+	.	transcript_id "Ledus.S1G394300.t1"; gene_id "Ledus.S1G394300"
Ledus.S1	AUGUSTUS	start_codon	31868780	31868782	.	+	0	transcript_id "Ledus.S1G394300.t1"; gene_id "Ledus.S1G394300"
Ledus.S1	AUGUSTUS	CDS	31868780	31869607	0.86	+	0	transcript_id "Ledus.S1G394300.t1"; gene_id "Ledus.S1G394300"
Ledus.S1	AUGUSTUS	exon	31868780	31869607	.	+	.	transcript_id "Ledus.S1G394300.t1"; gene_id "Ledus.S1G394300"
Ledus.S1	AUGUSTUS	stop_codon	31869608	31869610	.	+	0	transcript_id "Ledus.S1G394300.t1"; gene_id "Ledus.S1G394300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7494.t1 is derived from g12165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3450918	3451880	.	-	.	Ledus.S5G027200
Ledus.S5	AUGUSTUS	transcript	3450918	3451880	.	-	.	transcript_id "Ledus.S5G027200.t1"; gene_id "Ledus.S5G027200"
Ledus.S5	AUGUSTUS	stop_codon	3450915	3450917	.	-	0	transcript_id "Ledus.S5G027200.t1"; gene_id "Ledus.S5G027200"
Ledus.S5	AUGUSTUS	CDS	3450918	3451880	0.99	-	0	transcript_id "Ledus.S5G027200.t1"; gene_id "Ledus.S5G027200"
Ledus.S5	AUGUSTUS	exon	3450918	3451880	.	-	.	transcript_id "Ledus.S5G027200.t1"; gene_id "Ledus.S5G027200"
Ledus.S5	AUGUSTUS	start_codon	3451878	3451880	.	-	0	transcript_id "Ledus.S5G027200.t1"; gene_id "Ledus.S5G027200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4392.t1 is derived from g1828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16779434	16781098	.	+	.	Ledus.S1G181300
Ledus.S1	AUGUSTUS	transcript	16779434	16781098	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	start_codon	16779434	16779436	.	+	0	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	CDS	16779434	16779445	0.94	+	0	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	exon	16779434	16779445	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	intron	16779446	16779632	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	CDS	16779633	16779688	1	+	0	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	exon	16779633	16779688	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	intron	16779689	16779801	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	CDS	16779802	16779981	1	+	1	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	exon	16779802	16779981	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	intron	16779982	16780062	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	CDS	16780063	16780111	1	+	1	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	exon	16780063	16780111	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	intron	16780112	16780208	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	CDS	16780209	16780325	1	+	0	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	exon	16780209	16780325	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	intron	16780326	16780405	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	CDS	16780406	16780459	1	+	0	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	exon	16780406	16780459	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	intron	16780460	16780547	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	CDS	16780548	16780633	1	+	0	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	exon	16780548	16780633	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	intron	16780634	16780728	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	CDS	16780729	16780837	1	+	1	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	exon	16780729	16780837	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	intron	16780838	16780933	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	CDS	16780934	16781098	1	+	0	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	exon	16780934	16781098	.	+	.	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
Ledus.S1	AUGUSTUS	stop_codon	16781099	16781101	.	+	0	transcript_id "Ledus.S1G181300.t1"; gene_id "Ledus.S1G181300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9943.t1 is derived from g10973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11410934	11412466	.	-	.	Ledus.S3G142000
Ledus.S3	AUGUSTUS	transcript	11410934	11412466	.	-	.	transcript_id "Ledus.S3G142000.t1"; gene_id "Ledus.S3G142000"
Ledus.S3	AUGUSTUS	stop_codon	11410931	11410933	.	-	0	transcript_id "Ledus.S3G142000.t1"; gene_id "Ledus.S3G142000"
Ledus.S3	AUGUSTUS	CDS	11410934	11412466	0.83	-	0	transcript_id "Ledus.S3G142000.t1"; gene_id "Ledus.S3G142000"
Ledus.S3	AUGUSTUS	exon	11410934	11412466	.	-	.	transcript_id "Ledus.S3G142000.t1"; gene_id "Ledus.S3G142000"
Ledus.S3	AUGUSTUS	start_codon	11412464	11412466	.	-	0	transcript_id "Ledus.S3G142000.t1"; gene_id "Ledus.S3G142000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12559.t1 is derived from g6181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12870802	12872301	.	+	.	Ledus.S4G171500
Ledus.S4	AUGUSTUS	transcript	12870802	12872301	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	start_codon	12870802	12870804	.	+	0	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	CDS	12870802	12870883	0.96	+	0	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	exon	12870802	12870883	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	intron	12870884	12871320	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	CDS	12871321	12871422	1	+	2	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	exon	12871321	12871422	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	intron	12871423	12871556	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	CDS	12871557	12871652	1	+	2	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	exon	12871557	12871652	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	intron	12871653	12871811	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	CDS	12871812	12871843	1	+	2	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	exon	12871812	12871843	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	intron	12871844	12871974	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	CDS	12871975	12872050	1	+	0	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	exon	12871975	12872050	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	intron	12872051	12872138	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	CDS	12872139	12872192	1	+	2	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	exon	12872139	12872192	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	intron	12872193	12872275	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	CDS	12872276	12872301	1	+	2	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	exon	12872276	12872301	.	+	.	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
Ledus.S4	AUGUSTUS	stop_codon	12872302	12872304	.	+	0	transcript_id "Ledus.S4G171500.t1"; gene_id "Ledus.S4G171500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10063.t1 is derived from g11093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12422779	12422985	.	+	.	Ledus.S3G154000
Ledus.S3	AUGUSTUS	transcript	12422779	12422985	.	+	.	transcript_id "Ledus.S3G154000.t1"; gene_id "Ledus.S3G154000"
Ledus.S3	AUGUSTUS	start_codon	12422779	12422781	.	+	0	transcript_id "Ledus.S3G154000.t1"; gene_id "Ledus.S3G154000"
Ledus.S3	AUGUSTUS	CDS	12422779	12422985	0.94	+	0	transcript_id "Ledus.S3G154000.t1"; gene_id "Ledus.S3G154000"
Ledus.S3	AUGUSTUS	exon	12422779	12422985	.	+	.	transcript_id "Ledus.S3G154000.t1"; gene_id "Ledus.S3G154000"
Ledus.S3	AUGUSTUS	stop_codon	12422986	12422988	.	+	0	transcript_id "Ledus.S3G154000.t1"; gene_id "Ledus.S3G154000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7329.t1 is derived from g12000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1225162	1225461	.	-	.	Ledus.S5G010700
Ledus.S5	AUGUSTUS	transcript	1225162	1225461	.	-	.	transcript_id "Ledus.S5G010700.t1"; gene_id "Ledus.S5G010700"
Ledus.S5	AUGUSTUS	stop_codon	1225159	1225161	.	-	0	transcript_id "Ledus.S5G010700.t1"; gene_id "Ledus.S5G010700"
Ledus.S5	AUGUSTUS	CDS	1225162	1225461	0.63	-	0	transcript_id "Ledus.S5G010700.t1"; gene_id "Ledus.S5G010700"
Ledus.S5	AUGUSTUS	exon	1225162	1225461	.	-	.	transcript_id "Ledus.S5G010700.t1"; gene_id "Ledus.S5G010700"
Ledus.S5	AUGUSTUS	start_codon	1225459	1225461	.	-	0	transcript_id "Ledus.S5G010700.t1"; gene_id "Ledus.S5G010700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9961.t1 is derived from g10991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11585973	11586230	.	-	.	Ledus.S3G143800
Ledus.S3	AUGUSTUS	transcript	11585973	11586230	.	-	.	transcript_id "Ledus.S3G143800.t1"; gene_id "Ledus.S3G143800"
Ledus.S3	AUGUSTUS	stop_codon	11585970	11585972	.	-	0	transcript_id "Ledus.S3G143800.t1"; gene_id "Ledus.S3G143800"
Ledus.S3	AUGUSTUS	CDS	11585973	11586230	0.91	-	0	transcript_id "Ledus.S3G143800.t1"; gene_id "Ledus.S3G143800"
Ledus.S3	AUGUSTUS	exon	11585973	11586230	.	-	.	transcript_id "Ledus.S3G143800.t1"; gene_id "Ledus.S3G143800"
Ledus.S3	AUGUSTUS	start_codon	11586228	11586230	.	-	0	transcript_id "Ledus.S3G143800.t1"; gene_id "Ledus.S3G143800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg886.t1 is derived from g7747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5966546	5966866	.	+	.	Ledus.S2G076800
Ledus.S2	AUGUSTUS	transcript	5966546	5966866	.	+	.	transcript_id "Ledus.S2G076800.t1"; gene_id "Ledus.S2G076800"
Ledus.S2	AUGUSTUS	start_codon	5966546	5966548	.	+	0	transcript_id "Ledus.S2G076800.t1"; gene_id "Ledus.S2G076800"
Ledus.S2	AUGUSTUS	CDS	5966546	5966866	0.41	+	0	transcript_id "Ledus.S2G076800.t1"; gene_id "Ledus.S2G076800"
Ledus.S2	AUGUSTUS	exon	5966546	5966866	.	+	.	transcript_id "Ledus.S2G076800.t1"; gene_id "Ledus.S2G076800"
Ledus.S2	AUGUSTUS	stop_codon	5966867	5966869	.	+	0	transcript_id "Ledus.S2G076800.t1"; gene_id "Ledus.S2G076800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9623.t1 is derived from g10653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8447690	8450311	.	-	.	Ledus.S3G110000
Ledus.S3	AUGUSTUS	transcript	8447690	8450090	.	-	.	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	stop_codon	8447687	8447689	.	-	0	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	CDS	8447690	8449466	0.56	-	1	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	exon	8447690	8449466	.	-	.	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	intron	8449467	8449612	.	-	.	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	CDS	8449613	8449733	1	-	2	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	exon	8449613	8449733	.	-	.	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	intron	8449734	8449822	.	-	.	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	CDS	8449823	8449840	0.99	-	2	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	exon	8449823	8449840	.	-	.	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	intron	8449841	8449969	.	-	.	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	CDS	8449970	8450090	0.71	-	0	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	exon	8449970	8450090	.	-	.	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	start_codon	8450088	8450090	.	-	0	transcript_id "Ledus.S3G110000.t1"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	transcript	8447690	8450311	.	-	.	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	stop_codon	8447687	8447689	.	-	0	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	CDS	8447690	8449466	0.51	-	1	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	exon	8447690	8449466	.	-	.	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	intron	8449467	8449612	.	-	.	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	CDS	8449613	8449740	1	-	0	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	exon	8449613	8449740	.	-	.	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	intron	8449741	8449822	.	-	.	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	CDS	8449823	8449988	0.23	-	1	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	exon	8449823	8449988	.	-	.	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	intron	8449989	8450063	.	-	.	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	CDS	8450064	8450311	0.47	-	0	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	exon	8450064	8450311	.	-	.	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
Ledus.S3	AUGUSTUS	start_codon	8450309	8450311	.	-	0	transcript_id "Ledus.S3G110000.t2"; gene_id "Ledus.S3G110000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1829.t1 is derived from g8692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12842324	12843250	.	-	.	Ledus.S2G171100
Ledus.S2	AUGUSTUS	transcript	12842324	12843250	.	-	.	transcript_id "Ledus.S2G171100.t1"; gene_id "Ledus.S2G171100"
Ledus.S2	AUGUSTUS	stop_codon	12842321	12842323	.	-	0	transcript_id "Ledus.S2G171100.t1"; gene_id "Ledus.S2G171100"
Ledus.S2	AUGUSTUS	CDS	12842324	12843250	1	-	0	transcript_id "Ledus.S2G171100.t1"; gene_id "Ledus.S2G171100"
Ledus.S2	AUGUSTUS	exon	12842324	12843250	.	-	.	transcript_id "Ledus.S2G171100.t1"; gene_id "Ledus.S2G171100"
Ledus.S2	AUGUSTUS	start_codon	12843248	12843250	.	-	0	transcript_id "Ledus.S2G171100.t1"; gene_id "Ledus.S2G171100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6528.t1 is derived from g3971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32129134	32129421	.	+	.	Ledus.S1G394900
Ledus.S1	AUGUSTUS	transcript	32129134	32129421	.	+	.	transcript_id "Ledus.S1G394900.t1"; gene_id "Ledus.S1G394900"
Ledus.S1	AUGUSTUS	start_codon	32129134	32129136	.	+	0	transcript_id "Ledus.S1G394900.t1"; gene_id "Ledus.S1G394900"
Ledus.S1	AUGUSTUS	CDS	32129134	32129421	0.97	+	0	transcript_id "Ledus.S1G394900.t1"; gene_id "Ledus.S1G394900"
Ledus.S1	AUGUSTUS	exon	32129134	32129421	.	+	.	transcript_id "Ledus.S1G394900.t1"; gene_id "Ledus.S1G394900"
Ledus.S1	AUGUSTUS	stop_codon	32129422	32129424	.	+	0	transcript_id "Ledus.S1G394900.t1"; gene_id "Ledus.S1G394900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9489.t1 is derived from g10519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7327196	7330874	.	-	.	Ledus.S3G096600
Ledus.S3	AUGUSTUS	transcript	7327196	7330874	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	stop_codon	7327193	7327195	.	-	0	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7327196	7327220	1	-	1	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7327196	7327220	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7327221	7327298	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7327299	7327385	1	-	1	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7327299	7327385	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7327386	7327481	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7327482	7327505	1	-	1	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7327482	7327505	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7327506	7327689	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7327690	7327718	0.75	-	0	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7327690	7327718	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7327719	7327765	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7327766	7327802	0.75	-	1	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7327766	7327802	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7327803	7327938	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7327939	7328010	0.75	-	1	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7327939	7328010	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7328011	7328106	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7328107	7328157	0.75	-	1	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7328107	7328157	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7328158	7328289	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7328290	7328377	0.75	-	2	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7328290	7328377	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7328378	7328517	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7328518	7328641	0.94	-	0	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7328518	7328641	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7328642	7328749	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7328750	7328822	0.94	-	1	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7328750	7328822	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7328823	7328937	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7328938	7328995	1	-	2	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7328938	7328995	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7328996	7329086	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7329087	7329265	1	-	1	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7329087	7329265	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7329266	7329395	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7329396	7329445	1	-	0	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7329396	7329445	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7329446	7329651	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7329652	7329715	1	-	1	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7329652	7329715	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7329716	7329849	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7329850	7330032	0.48	-	1	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7329850	7330032	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7330033	7330134	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7330135	7330177	0.54	-	2	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7330135	7330177	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7330178	7330417	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7330418	7330433	0.43	-	0	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7330418	7330433	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7330434	7330492	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7330493	7330504	0.43	-	0	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7330493	7330504	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7330505	7330658	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7330659	7330696	0.54	-	2	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7330659	7330696	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	intron	7330697	7330807	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	CDS	7330808	7330874	0.53	-	0	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	exon	7330808	7330874	.	-	.	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
Ledus.S3	AUGUSTUS	start_codon	7330872	7330874	.	-	0	transcript_id "Ledus.S3G096600.t1"; gene_id "Ledus.S3G096600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6162.t1 is derived from g3605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29334535	29335365	.	-	.	Ledus.S1G358300
Ledus.S1	AUGUSTUS	transcript	29334535	29335365	.	-	.	transcript_id "Ledus.S1G358300.t1"; gene_id "Ledus.S1G358300"
Ledus.S1	AUGUSTUS	stop_codon	29334532	29334534	.	-	0	transcript_id "Ledus.S1G358300.t1"; gene_id "Ledus.S1G358300"
Ledus.S1	AUGUSTUS	CDS	29334535	29335365	0.38	-	0	transcript_id "Ledus.S1G358300.t1"; gene_id "Ledus.S1G358300"
Ledus.S1	AUGUSTUS	exon	29334535	29335365	.	-	.	transcript_id "Ledus.S1G358300.t1"; gene_id "Ledus.S1G358300"
Ledus.S1	AUGUSTUS	start_codon	29335363	29335365	.	-	0	transcript_id "Ledus.S1G358300.t1"; gene_id "Ledus.S1G358300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7415.t1 is derived from g12086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2150436	2150789	.	+	.	Ledus.S5G019300
Ledus.S5	AUGUSTUS	transcript	2150436	2150789	.	+	.	transcript_id "Ledus.S5G019300.t1"; gene_id "Ledus.S5G019300"
Ledus.S5	AUGUSTUS	start_codon	2150436	2150438	.	+	0	transcript_id "Ledus.S5G019300.t1"; gene_id "Ledus.S5G019300"
Ledus.S5	AUGUSTUS	CDS	2150436	2150789	0.39	+	0	transcript_id "Ledus.S5G019300.t1"; gene_id "Ledus.S5G019300"
Ledus.S5	AUGUSTUS	exon	2150436	2150789	.	+	.	transcript_id "Ledus.S5G019300.t1"; gene_id "Ledus.S5G019300"
Ledus.S5	AUGUSTUS	stop_codon	2150790	2150792	.	+	0	transcript_id "Ledus.S5G019300.t1"; gene_id "Ledus.S5G019300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10609.t1 is derived from g11639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16442903	16443944	.	+	.	Ledus.S3G208600
Ledus.S3	AUGUSTUS	transcript	16442903	16443944	.	+	.	transcript_id "Ledus.S3G208600.t1"; gene_id "Ledus.S3G208600"
Ledus.S3	AUGUSTUS	start_codon	16442903	16442905	.	+	0	transcript_id "Ledus.S3G208600.t1"; gene_id "Ledus.S3G208600"
Ledus.S3	AUGUSTUS	CDS	16442903	16443129	0.93	+	0	transcript_id "Ledus.S3G208600.t1"; gene_id "Ledus.S3G208600"
Ledus.S3	AUGUSTUS	exon	16442903	16443129	.	+	.	transcript_id "Ledus.S3G208600.t1"; gene_id "Ledus.S3G208600"
Ledus.S3	AUGUSTUS	intron	16443130	16443310	.	+	.	transcript_id "Ledus.S3G208600.t1"; gene_id "Ledus.S3G208600"
Ledus.S3	AUGUSTUS	CDS	16443311	16443944	0.41	+	1	transcript_id "Ledus.S3G208600.t1"; gene_id "Ledus.S3G208600"
Ledus.S3	AUGUSTUS	exon	16443311	16443944	.	+	.	transcript_id "Ledus.S3G208600.t1"; gene_id "Ledus.S3G208600"
Ledus.S3	AUGUSTUS	stop_codon	16443945	16443947	.	+	0	transcript_id "Ledus.S3G208600.t1"; gene_id "Ledus.S3G208600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3779.t1 is derived from g1215.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11951947	11952642	.	+	.	Ledus.S1G120000
Ledus.S1	AUGUSTUS	transcript	11951947	11952642	.	+	.	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	start_codon	11951947	11951949	.	+	0	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	CDS	11951947	11952131	0.57	+	0	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	exon	11951947	11952131	.	+	.	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	intron	11952132	11952249	.	+	.	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	CDS	11952250	11952286	1	+	1	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	exon	11952250	11952286	.	+	.	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	intron	11952287	11952367	.	+	.	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	CDS	11952368	11952469	1	+	0	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	exon	11952368	11952469	.	+	.	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	intron	11952470	11952552	.	+	.	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	CDS	11952553	11952642	1	+	0	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	exon	11952553	11952642	.	+	.	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
Ledus.S1	AUGUSTUS	stop_codon	11952643	11952645	.	+	0	transcript_id "Ledus.S1G120000.t1"; gene_id "Ledus.S1G120000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3833.t1 is derived from g1269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12948003	12948212	.	+	.	Ledus.S1G125400
Ledus.S1	AUGUSTUS	transcript	12948003	12948212	.	+	.	transcript_id "Ledus.S1G125400.t1"; gene_id "Ledus.S1G125400"
Ledus.S1	AUGUSTUS	start_codon	12948003	12948005	.	+	0	transcript_id "Ledus.S1G125400.t1"; gene_id "Ledus.S1G125400"
Ledus.S1	AUGUSTUS	CDS	12948003	12948212	1	+	0	transcript_id "Ledus.S1G125400.t1"; gene_id "Ledus.S1G125400"
Ledus.S1	AUGUSTUS	exon	12948003	12948212	.	+	.	transcript_id "Ledus.S1G125400.t1"; gene_id "Ledus.S1G125400"
Ledus.S1	AUGUSTUS	stop_codon	12948213	12948215	.	+	0	transcript_id "Ledus.S1G125400.t1"; gene_id "Ledus.S1G125400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg999.t1 is derived from g7860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6554780	6555887	.	+	.	Ledus.S2G088100
Ledus.S2	AUGUSTUS	transcript	6554780	6555887	.	+	.	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	start_codon	6554780	6554782	.	+	0	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	CDS	6554780	6554816	0.51	+	0	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	exon	6554780	6554816	.	+	.	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	intron	6554817	6554886	.	+	.	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	CDS	6554887	6554945	0.99	+	2	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	exon	6554887	6554945	.	+	.	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	intron	6554946	6555042	.	+	.	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	CDS	6555043	6555176	1	+	0	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	exon	6555043	6555176	.	+	.	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	intron	6555177	6555297	.	+	.	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	CDS	6555298	6555440	1	+	1	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	exon	6555298	6555440	.	+	.	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	intron	6555441	6555529	.	+	.	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	CDS	6555530	6555601	1	+	2	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	exon	6555530	6555601	.	+	.	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	intron	6555602	6555681	.	+	.	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	CDS	6555682	6555887	1	+	2	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	exon	6555682	6555887	.	+	.	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
Ledus.S2	AUGUSTUS	stop_codon	6555888	6555890	.	+	0	transcript_id "Ledus.S2G088100.t1"; gene_id "Ledus.S2G088100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12233.t1 is derived from g5853.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10529717	10540621	.	+	.	Ledus.S4G138900
Ledus.S4	AUGUSTUS	transcript	10529717	10540621	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	start_codon	10529717	10529719	.	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10529717	10529791	1	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10529717	10529791	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10529792	10529866	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10529867	10529955	1	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10529867	10529955	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10529956	10530072	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10530073	10530196	0.95	+	1	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10530073	10530196	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10530197	10530292	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10530293	10531624	1	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10530293	10531624	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10531625	10531786	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10531787	10532170	0.99	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10531787	10532170	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10532171	10532312	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10532313	10532405	1	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10532313	10532405	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10532406	10532524	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10532525	10532716	0.58	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10532525	10532716	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10532717	10532978	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10532979	10533120	1	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10532979	10533120	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10533121	10533204	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10533205	10533386	1	+	2	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10533205	10533386	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10533387	10533522	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10533523	10533608	0.96	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10533523	10533608	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10533609	10533714	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10533715	10533763	0.56	+	1	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10533715	10533763	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10533764	10533854	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10533855	10533921	1	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10533855	10533921	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10533922	10534008	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10534009	10534511	0.94	+	2	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10534009	10534511	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10534512	10534658	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10534659	10534758	1	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10534659	10534758	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10534759	10534862	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10534863	10534993	0.86	+	2	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10534863	10534993	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10534994	10535163	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10535164	10535231	1	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10535164	10535231	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10535232	10535390	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10535391	10535425	0.99	+	1	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10535391	10535425	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10535426	10535492	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10535493	10535602	0.97	+	2	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10535493	10535602	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10535603	10535750	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10535751	10535954	1	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10535751	10535954	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10535955	10536121	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10536122	10536277	1	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10536122	10536277	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10536278	10536400	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10536401	10536454	0.99	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10536401	10536454	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10536455	10536564	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10536565	10536761	1	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10536565	10536761	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10536762	10536905	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10536906	10536978	0.95	+	1	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10536906	10536978	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10536979	10537080	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10537081	10537436	0.99	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10537081	10537436	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10537437	10537617	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10537618	10537777	1	+	1	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10537618	10537777	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10537778	10537870	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10537871	10539890	0.9	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10537871	10539890	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10539891	10540265	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10540266	10540315	0.83	+	2	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10540266	10540315	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10540316	10540409	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10540410	10540481	0.96	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10540410	10540481	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10540482	10540597	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10540598	10540621	0.8	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10540598	10540621	.	+	.	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	stop_codon	10540622	10540624	.	+	0	transcript_id "Ledus.S4G138900.t1"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	transcript	10529717	10540621	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	start_codon	10529717	10529719	.	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10529717	10529791	0.98	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10529717	10529791	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10529792	10529866	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10529867	10529955	1	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10529867	10529955	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10529956	10530072	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10530073	10530196	0.95	+	1	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10530073	10530196	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10530197	10530292	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10530293	10531624	1	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10530293	10531624	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10531625	10531786	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10531787	10532170	0.98	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10531787	10532170	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10532171	10532312	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10532313	10532405	1	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10532313	10532405	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10532406	10532524	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10532525	10532716	0.58	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10532525	10532716	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10532717	10532978	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10532979	10533120	1	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10532979	10533120	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10533121	10533204	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10533205	10533386	0.99	+	2	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10533205	10533386	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10533387	10533522	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10533523	10533608	0.98	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10533523	10533608	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10533609	10533714	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10533715	10533763	0.58	+	1	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10533715	10533763	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10533764	10533854	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10533855	10533921	1	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10533855	10533921	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10533922	10534008	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10534009	10534511	0.98	+	2	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10534009	10534511	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10534512	10534658	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10534659	10534758	0.99	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10534659	10534758	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10534759	10534862	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10534863	10534993	0.83	+	2	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10534863	10534993	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10534994	10535163	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10535164	10535231	1	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10535164	10535231	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10535232	10535364	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10535365	10535602	1	+	1	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10535365	10535602	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10535603	10535750	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10535751	10535954	1	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10535751	10535954	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10535955	10536121	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10536122	10536277	1	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10536122	10536277	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10536278	10536400	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10536401	10536454	1	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10536401	10536454	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10536455	10536564	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10536565	10536761	0.99	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10536565	10536761	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10536762	10536905	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10536906	10536978	0.97	+	1	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10536906	10536978	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10536979	10537080	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10537081	10537436	1	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10537081	10537436	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10537437	10537617	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10537618	10537777	1	+	1	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10537618	10537777	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10537778	10537870	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10537871	10539890	0.86	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10537871	10539890	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10539891	10540265	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10540266	10540315	0.76	+	2	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10540266	10540315	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10540316	10540409	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10540410	10540481	0.97	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10540410	10540481	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	intron	10540482	10540597	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	CDS	10540598	10540621	0.83	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	exon	10540598	10540621	.	+	.	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
Ledus.S4	AUGUSTUS	stop_codon	10540622	10540624	.	+	0	transcript_id "Ledus.S4G138900.t2"; gene_id "Ledus.S4G138900"
# This transcript jg9111.t2 is derived from g10141.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9112.t1 is derived from g10142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4661117	4664296	.	-	.	Ledus.S3G058900
Ledus.S3	AUGUSTUS	transcript	4661117	4664296	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	stop_codon	4661114	4661116	.	-	0	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	CDS	4661117	4661223	0.61	-	2	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	exon	4661117	4661223	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	intron	4661224	4661493	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	CDS	4661494	4661656	0.7	-	0	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	exon	4661494	4661656	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	intron	4661657	4661833	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	CDS	4661834	4661941	1	-	0	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	exon	4661834	4661941	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	intron	4661942	4662050	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	CDS	4662051	4662110	0.97	-	0	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	exon	4662051	4662110	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	intron	4662111	4662206	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	CDS	4662207	4662282	1	-	1	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	exon	4662207	4662282	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	intron	4662283	4662379	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	CDS	4662380	4662537	1	-	0	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	exon	4662380	4662537	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	intron	4662538	4662720	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	CDS	4662721	4662859	1	-	1	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	exon	4662721	4662859	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	intron	4662860	4663058	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	CDS	4663059	4664296	0.61	-	0	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	exon	4663059	4664296	.	-	.	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
Ledus.S3	AUGUSTUS	start_codon	4664294	4664296	.	-	0	transcript_id "Ledus.S3G058900.t1"; gene_id "Ledus.S3G058900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10426.t1 is derived from g11456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15069945	15073715	.	-	.	Ledus.S3G190300
Ledus.S3	AUGUSTUS	transcript	15069945	15073715	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	stop_codon	15069942	15069944	.	-	0	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	CDS	15069945	15070148	0.98	-	0	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	exon	15069945	15070148	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	intron	15070149	15070574	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	CDS	15070575	15070716	0.98	-	1	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	exon	15070575	15070716	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	intron	15070717	15070820	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	CDS	15070821	15070886	0.98	-	1	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	exon	15070821	15070886	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	intron	15070887	15070969	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	CDS	15070970	15071041	1	-	1	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	exon	15070970	15071041	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	intron	15071042	15071126	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	CDS	15071127	15071234	1	-	1	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	exon	15071127	15071234	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	intron	15071235	15071310	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	CDS	15071311	15071396	1	-	0	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	exon	15071311	15071396	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	intron	15071397	15071481	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	CDS	15071482	15071709	1	-	0	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	exon	15071482	15071709	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	intron	15071710	15071804	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	CDS	15071805	15071933	1	-	0	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	exon	15071805	15071933	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	intron	15071934	15072020	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	CDS	15072021	15073715	0.92	-	0	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	exon	15072021	15073715	.	-	.	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
Ledus.S3	AUGUSTUS	start_codon	15073713	15073715	.	-	0	transcript_id "Ledus.S3G190300.t1"; gene_id "Ledus.S3G190300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11263.t1 is derived from g4881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3068543	3071296	.	+	.	Ledus.S4G041900
Ledus.S4	AUGUSTUS	transcript	3068543	3071296	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	start_codon	3068543	3068545	.	+	0	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	CDS	3068543	3068788	0.45	+	0	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	exon	3068543	3068788	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	intron	3068789	3068907	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	CDS	3068908	3069024	0.97	+	0	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	exon	3068908	3069024	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	intron	3069025	3069133	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	CDS	3069134	3069387	0.49	+	0	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	exon	3069134	3069387	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	intron	3069388	3069770	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	CDS	3069771	3069810	0.31	+	1	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	exon	3069771	3069810	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	intron	3069811	3069967	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	CDS	3069968	3070102	0.97	+	0	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	exon	3069968	3070102	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	intron	3070103	3070191	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	CDS	3070192	3070335	0.99	+	0	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	exon	3070192	3070335	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	intron	3070336	3070427	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	CDS	3070428	3070532	0.95	+	0	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	exon	3070428	3070532	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	intron	3070533	3070639	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	CDS	3070640	3070729	1	+	0	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	exon	3070640	3070729	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	intron	3070730	3070822	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	CDS	3070823	3071296	1	+	0	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	exon	3070823	3071296	.	+	.	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
Ledus.S4	AUGUSTUS	stop_codon	3071297	3071299	.	+	0	transcript_id "Ledus.S4G041900.t1"; gene_id "Ledus.S4G041900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg887.t1 is derived from g7748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5967883	5968486	.	+	.	Ledus.S2G076900
Ledus.S2	AUGUSTUS	transcript	5967883	5968486	.	+	.	transcript_id "Ledus.S2G076900.t1"; gene_id "Ledus.S2G076900"
Ledus.S2	AUGUSTUS	start_codon	5967883	5967885	.	+	0	transcript_id "Ledus.S2G076900.t1"; gene_id "Ledus.S2G076900"
Ledus.S2	AUGUSTUS	CDS	5967883	5968085	0.8	+	0	transcript_id "Ledus.S2G076900.t1"; gene_id "Ledus.S2G076900"
Ledus.S2	AUGUSTUS	exon	5967883	5968085	.	+	.	transcript_id "Ledus.S2G076900.t1"; gene_id "Ledus.S2G076900"
Ledus.S2	AUGUSTUS	intron	5968086	5968422	.	+	.	transcript_id "Ledus.S2G076900.t1"; gene_id "Ledus.S2G076900"
Ledus.S2	AUGUSTUS	CDS	5968423	5968486	0.76	+	1	transcript_id "Ledus.S2G076900.t1"; gene_id "Ledus.S2G076900"
Ledus.S2	AUGUSTUS	exon	5968423	5968486	.	+	.	transcript_id "Ledus.S2G076900.t1"; gene_id "Ledus.S2G076900"
Ledus.S2	AUGUSTUS	stop_codon	5968487	5968489	.	+	0	transcript_id "Ledus.S2G076900.t1"; gene_id "Ledus.S2G076900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6984.t1 is derived from g6515.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	529564	535119	.	-	.	Ledus.C7G004500
Ledus.C7	AUGUSTUS	transcript	529564	535119	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	stop_codon	529561	529563	.	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	529564	529683	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	529564	529683	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	529684	529862	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	529863	529986	1	-	1	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	529863	529986	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	529987	530265	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	530266	530391	1	-	1	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	530266	530391	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	530392	530490	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	530491	530585	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	530491	530585	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	530586	530774	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	530775	530843	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	530775	530843	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	530844	530979	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	530980	531091	1	-	1	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	530980	531091	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	531092	531241	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	531242	531360	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	531242	531360	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	531361	531513	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	531514	531594	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	531514	531594	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	531595	531694	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	531695	531766	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	531695	531766	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	531767	531981	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	531982	532194	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	531982	532194	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	532195	532441	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	532442	532525	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	532442	532525	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	532526	532610	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	532611	532745	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	532611	532745	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	532746	532893	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	532894	532984	1	-	1	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	532894	532984	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	532985	533186	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	533187	533242	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	533187	533242	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	533243	533324	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	533325	533432	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	533325	533432	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	533433	533537	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	533538	533654	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	533538	533654	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	533655	533760	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	533761	533815	0.99	-	1	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	533761	533815	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	533816	533964	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	533965	534095	1	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	533965	534095	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	534096	534203	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	534204	534721	0.92	-	2	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	534204	534721	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	534722	534848	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	534849	535119	0.9	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	534849	535119	.	-	.	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	start_codon	535117	535119	.	-	0	transcript_id "Ledus.C7G004500.t1"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	transcript	529564	535119	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	stop_codon	529561	529563	.	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	529564	529683	1	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	529564	529683	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	529684	529862	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	529863	529986	1	-	1	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	529863	529986	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	529987	530265	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	530266	530391	1	-	1	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	530266	530391	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	530392	530490	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	530491	530585	1	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	530491	530585	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	530586	530774	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	530775	530843	1	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	530775	530843	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	530844	530979	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	530980	531091	1	-	1	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	530980	531091	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	531092	531241	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	531242	531312	1	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	531242	531312	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	531313	531513	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	531514	531594	1	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	531514	531594	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	531595	531694	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	531695	531766	1	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	531695	531766	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	531767	531981	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	531982	532194	1	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	531982	532194	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	532195	532441	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	532442	532525	1	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	532442	532525	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	532526	532610	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	532611	532745	1	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	532611	532745	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	532746	532893	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	532894	532984	1	-	1	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	532894	532984	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	532985	533186	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	533187	533242	1	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	533187	533242	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	533243	533324	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	533325	533432	1	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	533325	533432	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	533433	533537	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	533538	533654	1	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	533538	533654	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	533655	533760	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	533761	533815	0.98	-	1	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	533761	533815	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	533816	533964	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	533965	534095	0.98	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	533965	534095	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	534096	534203	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	534204	534721	0.91	-	2	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	534204	534721	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	intron	534722	534848	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	CDS	534849	535119	0.92	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	exon	534849	535119	.	-	.	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
Ledus.C7	AUGUSTUS	start_codon	535117	535119	.	-	0	transcript_id "Ledus.C7G004500.t2"; gene_id "Ledus.C7G004500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg626.t1 is derived from g7487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3769752	3771824	.	-	.	Ledus.S2G050800
Ledus.S2	AUGUSTUS	transcript	3769752	3771824	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	stop_codon	3769749	3769751	.	-	0	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3769752	3770047	1	-	2	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3769752	3770047	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3770048	3770119	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3770120	3770289	0.99	-	1	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3770120	3770289	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3770290	3770411	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3770412	3770613	0.86	-	2	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3770412	3770613	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3770614	3770718	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3770719	3770934	0.91	-	2	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3770719	3770934	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3770935	3771045	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3771046	3771272	0.93	-	1	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3771046	3771272	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3771273	3771355	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3771356	3771575	1	-	2	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3771356	3771575	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3771576	3771685	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3771686	3771824	0.94	-	0	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3771686	3771824	.	-	.	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	start_codon	3771822	3771824	.	-	0	transcript_id "Ledus.S2G050800.t1"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	transcript	3769752	3771824	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	stop_codon	3769749	3769751	.	-	0	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3769752	3770047	1	-	2	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3769752	3770047	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3770048	3770119	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3770120	3770289	0.95	-	1	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3770120	3770289	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3770290	3770411	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3770412	3770613	0.51	-	2	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3770412	3770613	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3770614	3770718	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3770719	3770751	0.35	-	2	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3770719	3770751	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3770752	3770927	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3770928	3770972	0.48	-	2	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3770928	3770972	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3770973	3771045	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3771046	3771272	1	-	1	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3771046	3771272	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3771273	3771355	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3771356	3771575	1	-	2	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3771356	3771575	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	intron	3771576	3771685	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	CDS	3771686	3771824	0.96	-	0	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	exon	3771686	3771824	.	-	.	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
Ledus.S2	AUGUSTUS	start_codon	3771822	3771824	.	-	0	transcript_id "Ledus.S2G050800.t2"; gene_id "Ledus.S2G050800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4836.t1 is derived from g2274.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20064266	20064885	.	-	.	Ledus.S1G225700
Ledus.S1	AUGUSTUS	transcript	20064266	20064885	.	-	.	transcript_id "Ledus.S1G225700.t1"; gene_id "Ledus.S1G225700"
Ledus.S1	AUGUSTUS	stop_codon	20064263	20064265	.	-	0	transcript_id "Ledus.S1G225700.t1"; gene_id "Ledus.S1G225700"
Ledus.S1	AUGUSTUS	CDS	20064266	20064377	0.58	-	1	transcript_id "Ledus.S1G225700.t1"; gene_id "Ledus.S1G225700"
Ledus.S1	AUGUSTUS	exon	20064266	20064377	.	-	.	transcript_id "Ledus.S1G225700.t1"; gene_id "Ledus.S1G225700"
Ledus.S1	AUGUSTUS	intron	20064378	20064485	.	-	.	transcript_id "Ledus.S1G225700.t1"; gene_id "Ledus.S1G225700"
Ledus.S1	AUGUSTUS	CDS	20064486	20064621	0.96	-	2	transcript_id "Ledus.S1G225700.t1"; gene_id "Ledus.S1G225700"
Ledus.S1	AUGUSTUS	exon	20064486	20064621	.	-	.	transcript_id "Ledus.S1G225700.t1"; gene_id "Ledus.S1G225700"
Ledus.S1	AUGUSTUS	intron	20064622	20064743	.	-	.	transcript_id "Ledus.S1G225700.t1"; gene_id "Ledus.S1G225700"
Ledus.S1	AUGUSTUS	CDS	20064744	20064885	0.74	-	0	transcript_id "Ledus.S1G225700.t1"; gene_id "Ledus.S1G225700"
Ledus.S1	AUGUSTUS	exon	20064744	20064885	.	-	.	transcript_id "Ledus.S1G225700.t1"; gene_id "Ledus.S1G225700"
Ledus.S1	AUGUSTUS	start_codon	20064883	20064885	.	-	0	transcript_id "Ledus.S1G225700.t1"; gene_id "Ledus.S1G225700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8106.t1 is derived from g12777.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9151750	9154332	.	+	.	Ledus.S5G088400
Ledus.S5	AUGUSTUS	transcript	9151750	9154332	.	+	.	transcript_id "Ledus.S5G088400.t1"; gene_id "Ledus.S5G088400"
Ledus.S5	AUGUSTUS	start_codon	9151750	9151752	.	+	0	transcript_id "Ledus.S5G088400.t1"; gene_id "Ledus.S5G088400"
Ledus.S5	AUGUSTUS	CDS	9151750	9154332	0.96	+	0	transcript_id "Ledus.S5G088400.t1"; gene_id "Ledus.S5G088400"
Ledus.S5	AUGUSTUS	exon	9151750	9154332	.	+	.	transcript_id "Ledus.S5G088400.t1"; gene_id "Ledus.S5G088400"
Ledus.S5	AUGUSTUS	stop_codon	9154333	9154335	.	+	0	transcript_id "Ledus.S5G088400.t1"; gene_id "Ledus.S5G088400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1209.t1 is derived from g8071.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8606470	8607033	.	-	.	Ledus.S2G109200
Ledus.S2	AUGUSTUS	transcript	8606470	8607033	.	-	.	transcript_id "Ledus.S2G109200.t1"; gene_id "Ledus.S2G109200"
Ledus.S2	AUGUSTUS	stop_codon	8606467	8606469	.	-	0	transcript_id "Ledus.S2G109200.t1"; gene_id "Ledus.S2G109200"
Ledus.S2	AUGUSTUS	CDS	8606470	8607033	0.62	-	0	transcript_id "Ledus.S2G109200.t1"; gene_id "Ledus.S2G109200"
Ledus.S2	AUGUSTUS	exon	8606470	8607033	.	-	.	transcript_id "Ledus.S2G109200.t1"; gene_id "Ledus.S2G109200"
Ledus.S2	AUGUSTUS	start_codon	8607031	8607033	.	-	0	transcript_id "Ledus.S2G109200.t1"; gene_id "Ledus.S2G109200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg339.t1 is derived from g7200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1820820	1823525	.	+	.	Ledus.S2G022100
Ledus.S2	AUGUSTUS	transcript	1820820	1823525	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	start_codon	1820820	1820822	.	+	0	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	CDS	1820820	1821365	0.93	+	0	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	exon	1820820	1821365	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	intron	1821366	1821503	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	CDS	1821504	1821716	1	+	0	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	exon	1821504	1821716	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	intron	1821717	1821823	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	CDS	1821824	1821980	1	+	0	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	exon	1821824	1821980	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	intron	1821981	1822337	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	CDS	1822338	1822681	0.95	+	2	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	exon	1822338	1822681	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	intron	1822682	1822784	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	CDS	1822785	1822866	0.95	+	0	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	exon	1822785	1822866	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	intron	1822867	1822971	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	CDS	1822972	1822989	0.93	+	2	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	exon	1822972	1822989	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	intron	1822990	1823213	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	CDS	1823214	1823343	1	+	2	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	exon	1823214	1823343	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	intron	1823344	1823437	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	CDS	1823438	1823525	1	+	1	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	exon	1823438	1823525	.	+	.	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
Ledus.S2	AUGUSTUS	stop_codon	1823526	1823528	.	+	0	transcript_id "Ledus.S2G022100.t1"; gene_id "Ledus.S2G022100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1896.t1 is derived from g8759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13256376	13257321	.	+	.	Ledus.S2G177800
Ledus.S2	AUGUSTUS	transcript	13256376	13257321	.	+	.	transcript_id "Ledus.S2G177800.t1"; gene_id "Ledus.S2G177800"
Ledus.S2	AUGUSTUS	start_codon	13256376	13256378	.	+	0	transcript_id "Ledus.S2G177800.t1"; gene_id "Ledus.S2G177800"
Ledus.S2	AUGUSTUS	CDS	13256376	13256474	0.99	+	0	transcript_id "Ledus.S2G177800.t1"; gene_id "Ledus.S2G177800"
Ledus.S2	AUGUSTUS	exon	13256376	13256474	.	+	.	transcript_id "Ledus.S2G177800.t1"; gene_id "Ledus.S2G177800"
Ledus.S2	AUGUSTUS	intron	13256475	13256652	.	+	.	transcript_id "Ledus.S2G177800.t1"; gene_id "Ledus.S2G177800"
Ledus.S2	AUGUSTUS	CDS	13256653	13257321	0.77	+	0	transcript_id "Ledus.S2G177800.t1"; gene_id "Ledus.S2G177800"
Ledus.S2	AUGUSTUS	exon	13256653	13257321	.	+	.	transcript_id "Ledus.S2G177800.t1"; gene_id "Ledus.S2G177800"
Ledus.S2	AUGUSTUS	stop_codon	13257322	13257324	.	+	0	transcript_id "Ledus.S2G177800.t1"; gene_id "Ledus.S2G177800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3611.t1 is derived from g1047.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10202296	10206916	.	-	.	Ledus.S1G103200
Ledus.S1	AUGUSTUS	transcript	10202296	10206916	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	stop_codon	10202293	10202295	.	-	0	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10202296	10202913	1	-	0	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10202296	10202913	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10202914	10202983	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10202984	10203086	1	-	1	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10202984	10203086	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10203087	10203176	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10203177	10203345	1	-	2	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10203177	10203345	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10203346	10203428	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10203429	10203678	1	-	0	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10203429	10203678	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10203679	10203777	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10203778	10204497	0.9	-	0	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10203778	10204497	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10204498	10204669	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10204670	10204930	0.52	-	0	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10204670	10204930	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10204931	10205008	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10205009	10205221	1	-	0	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10205009	10205221	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10205222	10205300	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10205301	10205417	1	-	0	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10205301	10205417	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10205418	10205503	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10205504	10205609	1	-	1	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10205504	10205609	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10205610	10205685	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10205686	10205854	1	-	2	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10205686	10205854	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10205855	10205925	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10205926	10206175	1	-	0	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10205926	10206175	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10206176	10206258	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10206259	10206647	1	-	2	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10206259	10206647	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10206648	10206726	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10206727	10206916	0.73	-	0	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10206727	10206916	.	-	.	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	start_codon	10206914	10206916	.	-	0	transcript_id "Ledus.S1G103200.t1"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	transcript	10202296	10206916	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	stop_codon	10202293	10202295	.	-	0	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10202296	10202913	1	-	0	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10202296	10202913	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10202914	10202983	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10202984	10203086	1	-	1	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10202984	10203086	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10203087	10203176	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10203177	10203345	1	-	2	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10203177	10203345	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10203346	10203428	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10203429	10203678	1	-	0	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10203429	10203678	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10203679	10203777	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10203778	10204497	0.86	-	0	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10203778	10204497	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10204498	10204669	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10204670	10204930	0.49	-	0	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10204670	10204930	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10204931	10205008	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10205009	10205221	1	-	0	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10205009	10205221	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10205222	10205300	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10205301	10205417	1	-	0	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10205301	10205417	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10205418	10205503	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10205504	10205609	1	-	1	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10205504	10205609	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10205610	10205685	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10205686	10205854	1	-	2	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10205686	10205854	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10205855	10205925	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10205926	10206175	1	-	0	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10205926	10206175	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10206176	10206258	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10206259	10206644	0.99	-	2	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10206259	10206644	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	intron	10206645	10206726	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	CDS	10206727	10206916	0.68	-	0	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	exon	10206727	10206916	.	-	.	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
Ledus.S1	AUGUSTUS	start_codon	10206914	10206916	.	-	0	transcript_id "Ledus.S1G103200.t2"; gene_id "Ledus.S1G103200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6224.t1 is derived from g3667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29745270	29746935	.	-	.	Ledus.S1G364500
Ledus.S1	AUGUSTUS	transcript	29745270	29746935	.	-	.	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	stop_codon	29745267	29745269	.	-	0	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	CDS	29745270	29745682	1	-	2	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	exon	29745270	29745682	.	-	.	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	intron	29745683	29745781	.	-	.	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	CDS	29745782	29745951	1	-	1	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	exon	29745782	29745951	.	-	.	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	intron	29745952	29746060	.	-	.	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	CDS	29746061	29746360	0.98	-	1	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	exon	29746061	29746360	.	-	.	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	intron	29746361	29746485	.	-	.	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	CDS	29746486	29746610	1	-	0	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	exon	29746486	29746610	.	-	.	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	intron	29746611	29746692	.	-	.	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	CDS	29746693	29746935	1	-	0	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	exon	29746693	29746935	.	-	.	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
Ledus.S1	AUGUSTUS	start_codon	29746933	29746935	.	-	0	transcript_id "Ledus.S1G364500.t1"; gene_id "Ledus.S1G364500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5765.t1 is derived from g3206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26651195	26652822	.	+	.	Ledus.S1G318600
Ledus.S1	AUGUSTUS	transcript	26651195	26652822	.	+	.	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	start_codon	26651195	26651197	.	+	0	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	CDS	26651195	26651215	0.64	+	0	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	exon	26651195	26651215	.	+	.	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	intron	26651216	26651306	.	+	.	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	CDS	26651307	26652080	0.95	+	0	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	exon	26651307	26652080	.	+	.	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	intron	26652081	26652193	.	+	.	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	CDS	26652194	26652580	0.99	+	0	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	exon	26652194	26652580	.	+	.	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	intron	26652581	26652747	.	+	.	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	CDS	26652748	26652822	1	+	0	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	exon	26652748	26652822	.	+	.	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
Ledus.S1	AUGUSTUS	stop_codon	26652823	26652825	.	+	0	transcript_id "Ledus.S1G318600.t1"; gene_id "Ledus.S1G318600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9875.t1 is derived from g10905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10792951	10794775	.	-	.	Ledus.S3G135200
Ledus.S3	AUGUSTUS	transcript	10792951	10794775	.	-	.	transcript_id "Ledus.S3G135200.t1"; gene_id "Ledus.S3G135200"
Ledus.S3	AUGUSTUS	stop_codon	10792948	10792950	.	-	0	transcript_id "Ledus.S3G135200.t1"; gene_id "Ledus.S3G135200"
Ledus.S3	AUGUSTUS	CDS	10792951	10793210	1	-	2	transcript_id "Ledus.S3G135200.t1"; gene_id "Ledus.S3G135200"
Ledus.S3	AUGUSTUS	exon	10792951	10793210	.	-	.	transcript_id "Ledus.S3G135200.t1"; gene_id "Ledus.S3G135200"
Ledus.S3	AUGUSTUS	intron	10793211	10793307	.	-	.	transcript_id "Ledus.S3G135200.t1"; gene_id "Ledus.S3G135200"
Ledus.S3	AUGUSTUS	CDS	10793308	10794072	0.97	-	2	transcript_id "Ledus.S3G135200.t1"; gene_id "Ledus.S3G135200"
Ledus.S3	AUGUSTUS	exon	10793308	10794072	.	-	.	transcript_id "Ledus.S3G135200.t1"; gene_id "Ledus.S3G135200"
Ledus.S3	AUGUSTUS	intron	10794073	10794189	.	-	.	transcript_id "Ledus.S3G135200.t1"; gene_id "Ledus.S3G135200"
Ledus.S3	AUGUSTUS	CDS	10794190	10794775	0.91	-	0	transcript_id "Ledus.S3G135200.t1"; gene_id "Ledus.S3G135200"
Ledus.S3	AUGUSTUS	exon	10794190	10794775	.	-	.	transcript_id "Ledus.S3G135200.t1"; gene_id "Ledus.S3G135200"
Ledus.S3	AUGUSTUS	start_codon	10794773	10794775	.	-	0	transcript_id "Ledus.S3G135200.t1"; gene_id "Ledus.S3G135200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3744.t1 is derived from g1180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11528752	11529374	.	+	.	Ledus.S1G116500
Ledus.S1	AUGUSTUS	transcript	11528752	11529374	.	+	.	transcript_id "Ledus.S1G116500.t1"; gene_id "Ledus.S1G116500"
Ledus.S1	AUGUSTUS	start_codon	11528752	11528754	.	+	0	transcript_id "Ledus.S1G116500.t1"; gene_id "Ledus.S1G116500"
Ledus.S1	AUGUSTUS	CDS	11528752	11528870	0.62	+	0	transcript_id "Ledus.S1G116500.t1"; gene_id "Ledus.S1G116500"
Ledus.S1	AUGUSTUS	exon	11528752	11528870	.	+	.	transcript_id "Ledus.S1G116500.t1"; gene_id "Ledus.S1G116500"
Ledus.S1	AUGUSTUS	intron	11528871	11528953	.	+	.	transcript_id "Ledus.S1G116500.t1"; gene_id "Ledus.S1G116500"
Ledus.S1	AUGUSTUS	CDS	11528954	11529374	0.94	+	1	transcript_id "Ledus.S1G116500.t1"; gene_id "Ledus.S1G116500"
Ledus.S1	AUGUSTUS	exon	11528954	11529374	.	+	.	transcript_id "Ledus.S1G116500.t1"; gene_id "Ledus.S1G116500"
Ledus.S1	AUGUSTUS	stop_codon	11529375	11529377	.	+	0	transcript_id "Ledus.S1G116500.t1"; gene_id "Ledus.S1G116500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7491.t1 is derived from g12162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3445340	3446946	.	-	.	Ledus.S5G026900
Ledus.S5	AUGUSTUS	transcript	3445340	3446946	.	-	.	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	stop_codon	3445337	3445339	.	-	0	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	CDS	3445340	3446059	0.94	-	0	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	exon	3445340	3446059	.	-	.	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	intron	3446060	3446131	.	-	.	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	CDS	3446132	3446449	1	-	0	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	exon	3446132	3446449	.	-	.	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	intron	3446450	3446538	.	-	.	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	CDS	3446539	3446652	1	-	0	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	exon	3446539	3446652	.	-	.	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	intron	3446653	3446742	.	-	.	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	CDS	3446743	3446946	1	-	0	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	exon	3446743	3446946	.	-	.	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
Ledus.S5	AUGUSTUS	start_codon	3446944	3446946	.	-	0	transcript_id "Ledus.S5G026900.t1"; gene_id "Ledus.S5G026900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5809.t1 is derived from g3251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27055898	27056676	.	+	.	Ledus.S1G323000
Ledus.S1	AUGUSTUS	transcript	27055898	27056676	.	+	.	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	start_codon	27055898	27055900	.	+	0	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	CDS	27055898	27055900	0.98	+	0	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	exon	27055898	27055900	.	+	.	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	intron	27055901	27055986	.	+	.	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	CDS	27055987	27056064	1	+	0	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	exon	27055987	27056064	.	+	.	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	intron	27056065	27056152	.	+	.	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	CDS	27056153	27056287	1	+	0	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	exon	27056153	27056287	.	+	.	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	intron	27056288	27056565	.	+	.	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	CDS	27056566	27056676	1	+	0	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	exon	27056566	27056676	.	+	.	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
Ledus.S1	AUGUSTUS	stop_codon	27056677	27056679	.	+	0	transcript_id "Ledus.S1G323000.t1"; gene_id "Ledus.S1G323000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1633.t1 is derived from g8494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11493151	11495115	.	-	.	Ledus.S2G151500
Ledus.S2	AUGUSTUS	transcript	11493151	11495115	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	stop_codon	11493148	11493150	.	-	0	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	CDS	11493151	11493813	0.97	-	0	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	exon	11493151	11493813	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	intron	11493814	11493906	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	CDS	11493907	11494040	1	-	2	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	exon	11493907	11494040	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	intron	11494041	11494132	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	CDS	11494133	11494224	1	-	1	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	exon	11494133	11494224	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	intron	11494225	11494319	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	CDS	11494320	11494366	1	-	0	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	exon	11494320	11494366	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	intron	11494367	11494520	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	CDS	11494521	11494609	1	-	2	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	exon	11494521	11494609	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	intron	11494610	11494791	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	CDS	11494792	11494909	1	-	0	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	exon	11494792	11494909	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	intron	11494910	11495004	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	CDS	11495005	11495115	0.27	-	0	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	exon	11495005	11495115	.	-	.	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
Ledus.S2	AUGUSTUS	start_codon	11495113	11495115	.	-	0	transcript_id "Ledus.S2G151500.t1"; gene_id "Ledus.S2G151500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9869.t1 is derived from g10899.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10778339	10779886	.	+	.	Ledus.S3G134600
Ledus.S3	AUGUSTUS	transcript	10778619	10779886	.	+	.	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	start_codon	10778619	10778621	.	+	0	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10778619	10778637	0.97	+	0	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10778619	10778637	.	+	.	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10778638	10778909	.	+	.	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10778910	10779034	1	+	2	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10778910	10779034	.	+	.	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10779035	10779117	.	+	.	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10779118	10779259	1	+	0	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10779118	10779259	.	+	.	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10779260	10779347	.	+	.	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10779348	10779502	1	+	2	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10779348	10779502	.	+	.	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10779503	10779580	.	+	.	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10779581	10779886	0.99	+	0	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10779581	10779886	.	+	.	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	stop_codon	10779887	10779889	.	+	0	transcript_id "Ledus.S3G134600.t1"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	transcript	10778781	10779886	.	+	.	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	start_codon	10778781	10778783	.	+	0	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10778781	10778829	0.95	+	0	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10778781	10778829	.	+	.	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10778830	10778909	.	+	.	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10778910	10779034	1	+	2	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10778910	10779034	.	+	.	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10779035	10779117	.	+	.	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10779118	10779259	1	+	0	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10779118	10779259	.	+	.	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10779260	10779347	.	+	.	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10779348	10779502	1	+	2	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10779348	10779502	.	+	.	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10779503	10779580	.	+	.	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10779581	10779886	0.97	+	0	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10779581	10779886	.	+	.	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	stop_codon	10779887	10779889	.	+	0	transcript_id "Ledus.S3G134600.t2"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	transcript	10778339	10779886	.	+	.	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	start_codon	10778339	10778341	.	+	0	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10778339	10778396	0.52	+	0	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10778339	10778396	.	+	.	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10778397	10778564	.	+	.	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10778565	10778633	0.97	+	2	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10778565	10778633	.	+	.	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10778634	10778909	.	+	.	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10778910	10779034	0.99	+	2	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10778910	10779034	.	+	.	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10779035	10779117	.	+	.	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10779118	10779259	1	+	0	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10779118	10779259	.	+	.	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10779260	10779347	.	+	.	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10779348	10779502	1	+	2	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10779348	10779502	.	+	.	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	intron	10779503	10779580	.	+	.	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	CDS	10779581	10779886	0.98	+	0	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	exon	10779581	10779886	.	+	.	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
Ledus.S3	AUGUSTUS	stop_codon	10779887	10779889	.	+	0	transcript_id "Ledus.S3G134600.t3"; gene_id "Ledus.S3G134600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10024.t1 is derived from g11054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11980410	11980715	.	-	.	Ledus.S3G150100
Ledus.S3	AUGUSTUS	transcript	11980410	11980715	.	-	.	transcript_id "Ledus.S3G150100.t1"; gene_id "Ledus.S3G150100"
Ledus.S3	AUGUSTUS	stop_codon	11980407	11980409	.	-	0	transcript_id "Ledus.S3G150100.t1"; gene_id "Ledus.S3G150100"
Ledus.S3	AUGUSTUS	CDS	11980410	11980715	0.77	-	0	transcript_id "Ledus.S3G150100.t1"; gene_id "Ledus.S3G150100"
Ledus.S3	AUGUSTUS	exon	11980410	11980715	.	-	.	transcript_id "Ledus.S3G150100.t1"; gene_id "Ledus.S3G150100"
Ledus.S3	AUGUSTUS	start_codon	11980713	11980715	.	-	0	transcript_id "Ledus.S3G150100.t1"; gene_id "Ledus.S3G150100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8794.t1 is derived from g9824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2021250	2021652	.	-	.	Ledus.S3G027100
Ledus.S3	AUGUSTUS	transcript	2021250	2021652	.	-	.	transcript_id "Ledus.S3G027100.t1"; gene_id "Ledus.S3G027100"
Ledus.S3	AUGUSTUS	stop_codon	2021247	2021249	.	-	0	transcript_id "Ledus.S3G027100.t1"; gene_id "Ledus.S3G027100"
Ledus.S3	AUGUSTUS	CDS	2021250	2021443	0.58	-	2	transcript_id "Ledus.S3G027100.t1"; gene_id "Ledus.S3G027100"
Ledus.S3	AUGUSTUS	exon	2021250	2021443	.	-	.	transcript_id "Ledus.S3G027100.t1"; gene_id "Ledus.S3G027100"
Ledus.S3	AUGUSTUS	intron	2021444	2021531	.	-	.	transcript_id "Ledus.S3G027100.t1"; gene_id "Ledus.S3G027100"
Ledus.S3	AUGUSTUS	CDS	2021532	2021652	0.38	-	0	transcript_id "Ledus.S3G027100.t1"; gene_id "Ledus.S3G027100"
Ledus.S3	AUGUSTUS	exon	2021532	2021652	.	-	.	transcript_id "Ledus.S3G027100.t1"; gene_id "Ledus.S3G027100"
Ledus.S3	AUGUSTUS	start_codon	2021650	2021652	.	-	0	transcript_id "Ledus.S3G027100.t1"; gene_id "Ledus.S3G027100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6852.t1 is derived from g4296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34643511	34645383	.	-	.	Ledus.S1G427300
Ledus.S1	AUGUSTUS	transcript	34643511	34645383	.	-	.	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	stop_codon	34643508	34643510	.	-	0	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	CDS	34643511	34643657	1	-	0	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	exon	34643511	34643657	.	-	.	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	intron	34643658	34643735	.	-	.	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	CDS	34643736	34643996	1	-	0	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	exon	34643736	34643996	.	-	.	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	intron	34643997	34644082	.	-	.	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	CDS	34644083	34644170	1	-	1	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	exon	34644083	34644170	.	-	.	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	intron	34644171	34644262	.	-	.	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	CDS	34644263	34644345	1	-	0	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	exon	34644263	34644345	.	-	.	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	intron	34644346	34644423	.	-	.	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	CDS	34644424	34644507	1	-	0	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	exon	34644424	34644507	.	-	.	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	intron	34644508	34644588	.	-	.	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	CDS	34644589	34645383	0.99	-	0	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	exon	34644589	34645383	.	-	.	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
Ledus.S1	AUGUSTUS	start_codon	34645381	34645383	.	-	0	transcript_id "Ledus.S1G427300.t1"; gene_id "Ledus.S1G427300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg759.t1 is derived from g7620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4854400	4855892	.	+	.	Ledus.S2G064100
Ledus.S2	AUGUSTUS	transcript	4854400	4855892	.	+	.	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	start_codon	4854400	4854402	.	+	0	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	CDS	4854400	4854672	0.93	+	0	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	exon	4854400	4854672	.	+	.	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	intron	4854673	4854769	.	+	.	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	CDS	4854770	4855231	1	+	0	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	exon	4854770	4855231	.	+	.	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	intron	4855232	4855312	.	+	.	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	CDS	4855313	4855666	1	+	0	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	exon	4855313	4855666	.	+	.	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	intron	4855667	4855760	.	+	.	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	CDS	4855761	4855892	1	+	0	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	exon	4855761	4855892	.	+	.	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
Ledus.S2	AUGUSTUS	stop_codon	4855893	4855895	.	+	0	transcript_id "Ledus.S2G064100.t1"; gene_id "Ledus.S2G064100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6544.t1 is derived from g3987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32235924	32238923	.	+	.	Ledus.S1G396500
Ledus.S1	AUGUSTUS	transcript	32235924	32238923	.	+	.	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	start_codon	32235924	32235926	.	+	0	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	CDS	32235924	32235978	0.98	+	0	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	exon	32235924	32235978	.	+	.	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	intron	32235979	32236175	.	+	.	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	CDS	32236176	32236322	1	+	2	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	exon	32236176	32236322	.	+	.	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	intron	32236323	32236398	.	+	.	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	CDS	32236399	32236472	0.94	+	2	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	exon	32236399	32236472	.	+	.	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	intron	32236473	32236580	.	+	.	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	CDS	32236581	32238923	0.89	+	0	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	exon	32236581	32238923	.	+	.	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
Ledus.S1	AUGUSTUS	stop_codon	32238924	32238926	.	+	0	transcript_id "Ledus.S1G396500.t1"; gene_id "Ledus.S1G396500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7822.t1 is derived from g12493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7238093	7240926	.	+	.	Ledus.S5G060000
Ledus.S5	AUGUSTUS	transcript	7238093	7240926	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	start_codon	7238093	7238095	.	+	0	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7238093	7238330	0.99	+	0	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7238093	7238330	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	intron	7238331	7238458	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7238459	7238527	1	+	2	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7238459	7238527	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	intron	7238528	7238731	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7238732	7238790	1	+	2	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7238732	7238790	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	intron	7238791	7238943	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7238944	7239030	1	+	0	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7238944	7239030	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	intron	7239031	7239315	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7239316	7239383	1	+	0	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7239316	7239383	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	intron	7239384	7239481	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7239482	7239530	1	+	1	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7239482	7239530	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	intron	7239531	7239822	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7239823	7239908	1	+	0	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7239823	7239908	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	intron	7239909	7240028	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7240029	7240086	1	+	1	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7240029	7240086	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	intron	7240087	7240204	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7240205	7240255	0.75	+	0	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7240205	7240255	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	intron	7240256	7240364	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7240365	7240442	0.84	+	0	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7240365	7240442	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	intron	7240443	7240522	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7240523	7240564	1	+	0	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7240523	7240564	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	intron	7240565	7240659	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7240660	7240770	0.99	+	0	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7240660	7240770	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	intron	7240771	7240881	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	CDS	7240882	7240926	0.56	+	0	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	exon	7240882	7240926	.	+	.	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
Ledus.S5	AUGUSTUS	stop_codon	7240927	7240929	.	+	0	transcript_id "Ledus.S5G060000.t1"; gene_id "Ledus.S5G060000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7610.t1 is derived from g12281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4353024	4353949	.	-	.	Ledus.S5G038800
Ledus.S5	AUGUSTUS	transcript	4353024	4353949	.	-	.	transcript_id "Ledus.S5G038800.t1"; gene_id "Ledus.S5G038800"
Ledus.S5	AUGUSTUS	stop_codon	4353021	4353023	.	-	0	transcript_id "Ledus.S5G038800.t1"; gene_id "Ledus.S5G038800"
Ledus.S5	AUGUSTUS	CDS	4353024	4353141	0.86	-	1	transcript_id "Ledus.S5G038800.t1"; gene_id "Ledus.S5G038800"
Ledus.S5	AUGUSTUS	exon	4353024	4353141	.	-	.	transcript_id "Ledus.S5G038800.t1"; gene_id "Ledus.S5G038800"
Ledus.S5	AUGUSTUS	intron	4353142	4353620	.	-	.	transcript_id "Ledus.S5G038800.t1"; gene_id "Ledus.S5G038800"
Ledus.S5	AUGUSTUS	CDS	4353621	4353949	0.74	-	0	transcript_id "Ledus.S5G038800.t1"; gene_id "Ledus.S5G038800"
Ledus.S5	AUGUSTUS	exon	4353621	4353949	.	-	.	transcript_id "Ledus.S5G038800.t1"; gene_id "Ledus.S5G038800"
Ledus.S5	AUGUSTUS	start_codon	4353947	4353949	.	-	0	transcript_id "Ledus.S5G038800.t1"; gene_id "Ledus.S5G038800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2331.t1 is derived from g9194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17217935	17220504	.	-	.	Ledus.S2G221300
Ledus.S2	AUGUSTUS	transcript	17217935	17220504	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	stop_codon	17217932	17217934	.	-	0	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	CDS	17217935	17218066	0.99	-	0	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	exon	17217935	17218066	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	intron	17218067	17218156	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	CDS	17218157	17218293	1	-	2	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	exon	17218157	17218293	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	intron	17218294	17218396	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	CDS	17218397	17218536	0.99	-	1	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	exon	17218397	17218536	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	intron	17218537	17218676	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	CDS	17218677	17218780	1	-	0	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	exon	17218677	17218780	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	intron	17218781	17218945	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	CDS	17218946	17219062	1	-	0	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	exon	17218946	17219062	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	intron	17219063	17219186	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	CDS	17219187	17219273	0.99	-	0	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	exon	17219187	17219273	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	intron	17219274	17219398	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	CDS	17219399	17219500	0.98	-	0	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	exon	17219399	17219500	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	intron	17219501	17219595	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	CDS	17219596	17219693	1	-	2	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	exon	17219596	17219693	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	intron	17219694	17219863	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	CDS	17219864	17219939	1	-	0	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	exon	17219864	17219939	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	intron	17219940	17220012	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	CDS	17220013	17220504	0.59	-	0	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	exon	17220013	17220504	.	-	.	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
Ledus.S2	AUGUSTUS	start_codon	17220502	17220504	.	-	0	transcript_id "Ledus.S2G221300.t1"; gene_id "Ledus.S2G221300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4060.t1 is derived from g1496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14377593	14378252	.	-	.	Ledus.S1G148100
Ledus.S1	AUGUSTUS	transcript	14377593	14378252	.	-	.	transcript_id "Ledus.S1G148100.t1"; gene_id "Ledus.S1G148100"
Ledus.S1	AUGUSTUS	stop_codon	14377590	14377592	.	-	0	transcript_id "Ledus.S1G148100.t1"; gene_id "Ledus.S1G148100"
Ledus.S1	AUGUSTUS	CDS	14377593	14377734	1	-	1	transcript_id "Ledus.S1G148100.t1"; gene_id "Ledus.S1G148100"
Ledus.S1	AUGUSTUS	exon	14377593	14377734	.	-	.	transcript_id "Ledus.S1G148100.t1"; gene_id "Ledus.S1G148100"
Ledus.S1	AUGUSTUS	intron	14377735	14377814	.	-	.	transcript_id "Ledus.S1G148100.t1"; gene_id "Ledus.S1G148100"
Ledus.S1	AUGUSTUS	CDS	14377815	14377869	1	-	2	transcript_id "Ledus.S1G148100.t1"; gene_id "Ledus.S1G148100"
Ledus.S1	AUGUSTUS	exon	14377815	14377869	.	-	.	transcript_id "Ledus.S1G148100.t1"; gene_id "Ledus.S1G148100"
Ledus.S1	AUGUSTUS	intron	14377870	14377969	.	-	.	transcript_id "Ledus.S1G148100.t1"; gene_id "Ledus.S1G148100"
Ledus.S1	AUGUSTUS	CDS	14377970	14378252	1	-	0	transcript_id "Ledus.S1G148100.t1"; gene_id "Ledus.S1G148100"
Ledus.S1	AUGUSTUS	exon	14377970	14378252	.	-	.	transcript_id "Ledus.S1G148100.t1"; gene_id "Ledus.S1G148100"
Ledus.S1	AUGUSTUS	start_codon	14378250	14378252	.	-	0	transcript_id "Ledus.S1G148100.t1"; gene_id "Ledus.S1G148100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5407.t1 is derived from g2846.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24017314	24019524	.	+	.	Ledus.S1G282800
Ledus.S1	AUGUSTUS	transcript	24017314	24019524	.	+	.	transcript_id "Ledus.S1G282800.t1"; gene_id "Ledus.S1G282800"
Ledus.S1	AUGUSTUS	start_codon	24017314	24017316	.	+	0	transcript_id "Ledus.S1G282800.t1"; gene_id "Ledus.S1G282800"
Ledus.S1	AUGUSTUS	CDS	24017314	24019524	1	+	0	transcript_id "Ledus.S1G282800.t1"; gene_id "Ledus.S1G282800"
Ledus.S1	AUGUSTUS	exon	24017314	24019524	.	+	.	transcript_id "Ledus.S1G282800.t1"; gene_id "Ledus.S1G282800"
Ledus.S1	AUGUSTUS	stop_codon	24019525	24019527	.	+	0	transcript_id "Ledus.S1G282800.t1"; gene_id "Ledus.S1G282800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg26.t1 is derived from g6455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C17	AUGUSTUS	gene	57384	59228	.	+	.	Ledus.C17G000400
Ledus.C17	AUGUSTUS	transcript	57384	59228	.	+	.	transcript_id "Ledus.C17G000400.t1"; gene_id "Ledus.C17G000400"
Ledus.C17	AUGUSTUS	start_codon	57384	57386	.	+	0	transcript_id "Ledus.C17G000400.t1"; gene_id "Ledus.C17G000400"
Ledus.C17	AUGUSTUS	CDS	57384	57504	0.21	+	0	transcript_id "Ledus.C17G000400.t1"; gene_id "Ledus.C17G000400"
Ledus.C17	AUGUSTUS	exon	57384	57504	.	+	.	transcript_id "Ledus.C17G000400.t1"; gene_id "Ledus.C17G000400"
Ledus.C17	AUGUSTUS	intron	57505	57597	.	+	.	transcript_id "Ledus.C17G000400.t1"; gene_id "Ledus.C17G000400"
Ledus.C17	AUGUSTUS	CDS	57598	59228	0.22	+	2	transcript_id "Ledus.C17G000400.t1"; gene_id "Ledus.C17G000400"
Ledus.C17	AUGUSTUS	exon	57598	59228	.	+	.	transcript_id "Ledus.C17G000400.t1"; gene_id "Ledus.C17G000400"
Ledus.C17	AUGUSTUS	stop_codon	59229	59231	.	+	0	transcript_id "Ledus.C17G000400.t1"; gene_id "Ledus.C17G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2452.t1 is derived from g9315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18187702	18187911	.	-	.	Ledus.S2G233400
Ledus.S2	AUGUSTUS	transcript	18187702	18187911	.	-	.	transcript_id "Ledus.S2G233400.t1"; gene_id "Ledus.S2G233400"
Ledus.S2	AUGUSTUS	stop_codon	18187699	18187701	.	-	0	transcript_id "Ledus.S2G233400.t1"; gene_id "Ledus.S2G233400"
Ledus.S2	AUGUSTUS	CDS	18187702	18187911	0.89	-	0	transcript_id "Ledus.S2G233400.t1"; gene_id "Ledus.S2G233400"
Ledus.S2	AUGUSTUS	exon	18187702	18187911	.	-	.	transcript_id "Ledus.S2G233400.t1"; gene_id "Ledus.S2G233400"
Ledus.S2	AUGUSTUS	start_codon	18187909	18187911	.	-	0	transcript_id "Ledus.S2G233400.t1"; gene_id "Ledus.S2G233400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5082.t1 is derived from g2521.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21485069	21485761	.	-	.	Ledus.S1G250300
Ledus.S1	AUGUSTUS	transcript	21485069	21485761	.	-	.	transcript_id "Ledus.S1G250300.t1"; gene_id "Ledus.S1G250300"
Ledus.S1	AUGUSTUS	stop_codon	21485066	21485068	.	-	0	transcript_id "Ledus.S1G250300.t1"; gene_id "Ledus.S1G250300"
Ledus.S1	AUGUSTUS	CDS	21485069	21485761	0.43	-	0	transcript_id "Ledus.S1G250300.t1"; gene_id "Ledus.S1G250300"
Ledus.S1	AUGUSTUS	exon	21485069	21485761	.	-	.	transcript_id "Ledus.S1G250300.t1"; gene_id "Ledus.S1G250300"
Ledus.S1	AUGUSTUS	start_codon	21485759	21485761	.	-	0	transcript_id "Ledus.S1G250300.t1"; gene_id "Ledus.S1G250300"
# This transcript jg2683.t2 is derived from g116.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2683.t3 is derived from g116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2684.t1 is derived from g117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1779305	1780008	.	-	.	Ledus.S1G010500
Ledus.S1	AUGUSTUS	transcript	1779305	1780008	.	-	.	transcript_id "Ledus.S1G010500.t1"; gene_id "Ledus.S1G010500"
Ledus.S1	AUGUSTUS	stop_codon	1779302	1779304	.	-	0	transcript_id "Ledus.S1G010500.t1"; gene_id "Ledus.S1G010500"
Ledus.S1	AUGUSTUS	CDS	1779305	1779703	0.7	-	0	transcript_id "Ledus.S1G010500.t1"; gene_id "Ledus.S1G010500"
Ledus.S1	AUGUSTUS	exon	1779305	1779703	.	-	.	transcript_id "Ledus.S1G010500.t1"; gene_id "Ledus.S1G010500"
Ledus.S1	AUGUSTUS	intron	1779704	1779780	.	-	.	transcript_id "Ledus.S1G010500.t1"; gene_id "Ledus.S1G010500"
Ledus.S1	AUGUSTUS	CDS	1779781	1780008	0.26	-	0	transcript_id "Ledus.S1G010500.t1"; gene_id "Ledus.S1G010500"
Ledus.S1	AUGUSTUS	exon	1779781	1780008	.	-	.	transcript_id "Ledus.S1G010500.t1"; gene_id "Ledus.S1G010500"
Ledus.S1	AUGUSTUS	start_codon	1780006	1780008	.	-	0	transcript_id "Ledus.S1G010500.t1"; gene_id "Ledus.S1G010500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9672.t1 is derived from g10702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8971059	8971653	.	+	.	Ledus.S3G114900
Ledus.S3	AUGUSTUS	transcript	8971059	8971653	.	+	.	transcript_id "Ledus.S3G114900.t1"; gene_id "Ledus.S3G114900"
Ledus.S3	AUGUSTUS	start_codon	8971059	8971061	.	+	0	transcript_id "Ledus.S3G114900.t1"; gene_id "Ledus.S3G114900"
Ledus.S3	AUGUSTUS	CDS	8971059	8971219	0.67	+	0	transcript_id "Ledus.S3G114900.t1"; gene_id "Ledus.S3G114900"
Ledus.S3	AUGUSTUS	exon	8971059	8971219	.	+	.	transcript_id "Ledus.S3G114900.t1"; gene_id "Ledus.S3G114900"
Ledus.S3	AUGUSTUS	intron	8971220	8971387	.	+	.	transcript_id "Ledus.S3G114900.t1"; gene_id "Ledus.S3G114900"
Ledus.S3	AUGUSTUS	CDS	8971388	8971458	0.63	+	1	transcript_id "Ledus.S3G114900.t1"; gene_id "Ledus.S3G114900"
Ledus.S3	AUGUSTUS	exon	8971388	8971458	.	+	.	transcript_id "Ledus.S3G114900.t1"; gene_id "Ledus.S3G114900"
Ledus.S3	AUGUSTUS	intron	8971459	8971618	.	+	.	transcript_id "Ledus.S3G114900.t1"; gene_id "Ledus.S3G114900"
Ledus.S3	AUGUSTUS	CDS	8971619	8971653	0.73	+	2	transcript_id "Ledus.S3G114900.t1"; gene_id "Ledus.S3G114900"
Ledus.S3	AUGUSTUS	exon	8971619	8971653	.	+	.	transcript_id "Ledus.S3G114900.t1"; gene_id "Ledus.S3G114900"
Ledus.S3	AUGUSTUS	stop_codon	8971654	8971656	.	+	0	transcript_id "Ledus.S3G114900.t1"; gene_id "Ledus.S3G114900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6265.t1 is derived from g3708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29983244	29985623	.	-	.	Ledus.S1G368600
Ledus.S1	AUGUSTUS	transcript	29983244	29985623	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	stop_codon	29983241	29983243	.	-	0	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	CDS	29983244	29983442	0.96	-	1	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	exon	29983244	29983442	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	intron	29983443	29983510	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	CDS	29983511	29983575	1	-	0	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	exon	29983511	29983575	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	intron	29983576	29983743	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	CDS	29983744	29983827	0.99	-	0	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	exon	29983744	29983827	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	intron	29983828	29983934	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	CDS	29983935	29984057	1	-	0	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	exon	29983935	29984057	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	intron	29984058	29984231	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	CDS	29984232	29984321	1	-	0	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	exon	29984232	29984321	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	intron	29984322	29984513	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	CDS	29984514	29984648	1	-	0	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	exon	29984514	29984648	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	intron	29984649	29984855	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	CDS	29984856	29984901	1	-	1	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	exon	29984856	29984901	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	intron	29984902	29985068	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	CDS	29985069	29985175	1	-	0	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	exon	29985069	29985175	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	intron	29985176	29985281	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	CDS	29985282	29985321	1	-	1	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	exon	29985282	29985321	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	intron	29985322	29985415	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	CDS	29985416	29985486	1	-	0	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	exon	29985416	29985486	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	intron	29985487	29985578	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	CDS	29985579	29985623	0.93	-	0	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	exon	29985579	29985623	.	-	.	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
Ledus.S1	AUGUSTUS	start_codon	29985621	29985623	.	-	0	transcript_id "Ledus.S1G368600.t1"; gene_id "Ledus.S1G368600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1445.t1 is derived from g8306.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10220532	10220804	.	+	.	Ledus.S2G132700
Ledus.S2	AUGUSTUS	transcript	10220532	10220804	.	+	.	transcript_id "Ledus.S2G132700.t1"; gene_id "Ledus.S2G132700"
Ledus.S2	AUGUSTUS	start_codon	10220532	10220534	.	+	0	transcript_id "Ledus.S2G132700.t1"; gene_id "Ledus.S2G132700"
Ledus.S2	AUGUSTUS	CDS	10220532	10220804	1	+	0	transcript_id "Ledus.S2G132700.t1"; gene_id "Ledus.S2G132700"
Ledus.S2	AUGUSTUS	exon	10220532	10220804	.	+	.	transcript_id "Ledus.S2G132700.t1"; gene_id "Ledus.S2G132700"
Ledus.S2	AUGUSTUS	stop_codon	10220805	10220807	.	+	0	transcript_id "Ledus.S2G132700.t1"; gene_id "Ledus.S2G132700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9959.t1 is derived from g10989.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11550905	11552671	.	+	.	Ledus.S3G143600
Ledus.S3	AUGUSTUS	transcript	11550905	11552671	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	start_codon	11550905	11550907	.	+	0	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11550905	11550919	0.86	+	0	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11550905	11550919	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	intron	11550920	11551161	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11551162	11551290	1	+	0	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11551162	11551290	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	intron	11551291	11551832	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11551833	11551898	0.85	+	0	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11551833	11551898	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	intron	11551899	11551996	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11551997	11552038	1	+	0	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11551997	11552038	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	intron	11552039	11552191	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11552192	11552265	1	+	0	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11552192	11552265	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	intron	11552266	11552333	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11552334	11552366	1	+	1	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11552334	11552366	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	intron	11552367	11552457	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11552458	11552671	0.96	+	1	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11552458	11552671	.	+	.	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	stop_codon	11552672	11552674	.	+	0	transcript_id "Ledus.S3G143600.t1"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	transcript	11550905	11552671	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	start_codon	11550905	11550907	.	+	0	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11550905	11550919	0.82	+	0	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11550905	11550919	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	intron	11550920	11551161	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11551162	11551290	0.97	+	0	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11551162	11551290	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	intron	11551291	11551839	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11551840	11551869	0.62	+	0	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11551840	11551869	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	intron	11551870	11551996	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11551997	11552038	0.9	+	0	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11551997	11552038	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	intron	11552039	11552191	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11552192	11552265	0.99	+	0	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11552192	11552265	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	intron	11552266	11552333	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11552334	11552366	0.99	+	1	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11552334	11552366	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	intron	11552367	11552457	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	CDS	11552458	11552671	0.96	+	1	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	exon	11552458	11552671	.	+	.	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
Ledus.S3	AUGUSTUS	stop_codon	11552672	11552674	.	+	0	transcript_id "Ledus.S3G143600.t2"; gene_id "Ledus.S3G143600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5928.t1 is derived from g3371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27880600	27881485	.	-	.	Ledus.S1G334900
Ledus.S1	AUGUSTUS	transcript	27880600	27881485	.	-	.	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	stop_codon	27880597	27880599	.	-	0	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	CDS	27880600	27880700	0.94	-	2	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	exon	27880600	27880700	.	-	.	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	intron	27880701	27880808	.	-	.	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	CDS	27880809	27880884	1	-	0	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	exon	27880809	27880884	.	-	.	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	intron	27880885	27880976	.	-	.	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	CDS	27880977	27881038	1	-	2	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	exon	27880977	27881038	.	-	.	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	intron	27881039	27881337	.	-	.	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	CDS	27881338	27881485	0.93	-	0	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	exon	27881338	27881485	.	-	.	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
Ledus.S1	AUGUSTUS	start_codon	27881483	27881485	.	-	0	transcript_id "Ledus.S1G334900.t1"; gene_id "Ledus.S1G334900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1676.t1 is derived from g8537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11799519	11802158	.	-	.	Ledus.S2G155800
Ledus.S2	AUGUSTUS	transcript	11799519	11802158	.	-	.	transcript_id "Ledus.S2G155800.t1"; gene_id "Ledus.S2G155800"
Ledus.S2	AUGUSTUS	stop_codon	11799516	11799518	.	-	0	transcript_id "Ledus.S2G155800.t1"; gene_id "Ledus.S2G155800"
Ledus.S2	AUGUSTUS	CDS	11799519	11799606	0.47	-	1	transcript_id "Ledus.S2G155800.t1"; gene_id "Ledus.S2G155800"
Ledus.S2	AUGUSTUS	exon	11799519	11799606	.	-	.	transcript_id "Ledus.S2G155800.t1"; gene_id "Ledus.S2G155800"
Ledus.S2	AUGUSTUS	intron	11799607	11799701	.	-	.	transcript_id "Ledus.S2G155800.t1"; gene_id "Ledus.S2G155800"
Ledus.S2	AUGUSTUS	CDS	11799702	11799783	0.9	-	2	transcript_id "Ledus.S2G155800.t1"; gene_id "Ledus.S2G155800"
Ledus.S2	AUGUSTUS	exon	11799702	11799783	.	-	.	transcript_id "Ledus.S2G155800.t1"; gene_id "Ledus.S2G155800"
Ledus.S2	AUGUSTUS	intron	11799784	11799973	.	-	.	transcript_id "Ledus.S2G155800.t1"; gene_id "Ledus.S2G155800"
Ledus.S2	AUGUSTUS	CDS	11799974	11802158	0.22	-	0	transcript_id "Ledus.S2G155800.t1"; gene_id "Ledus.S2G155800"
Ledus.S2	AUGUSTUS	exon	11799974	11802158	.	-	.	transcript_id "Ledus.S2G155800.t1"; gene_id "Ledus.S2G155800"
Ledus.S2	AUGUSTUS	start_codon	11802156	11802158	.	-	0	transcript_id "Ledus.S2G155800.t1"; gene_id "Ledus.S2G155800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5931.t1 is derived from g3374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27891101	27893504	.	-	.	Ledus.S1G335200
Ledus.S1	AUGUSTUS	transcript	27891101	27893504	.	-	.	transcript_id "Ledus.S1G335200.t1"; gene_id "Ledus.S1G335200"
Ledus.S1	AUGUSTUS	stop_codon	27891098	27891100	.	-	0	transcript_id "Ledus.S1G335200.t1"; gene_id "Ledus.S1G335200"
Ledus.S1	AUGUSTUS	CDS	27891101	27892552	1	-	0	transcript_id "Ledus.S1G335200.t1"; gene_id "Ledus.S1G335200"
Ledus.S1	AUGUSTUS	exon	27891101	27892552	.	-	.	transcript_id "Ledus.S1G335200.t1"; gene_id "Ledus.S1G335200"
Ledus.S1	AUGUSTUS	intron	27892553	27892640	.	-	.	transcript_id "Ledus.S1G335200.t1"; gene_id "Ledus.S1G335200"
Ledus.S1	AUGUSTUS	CDS	27892641	27893504	0.98	-	0	transcript_id "Ledus.S1G335200.t1"; gene_id "Ledus.S1G335200"
Ledus.S1	AUGUSTUS	exon	27892641	27893504	.	-	.	transcript_id "Ledus.S1G335200.t1"; gene_id "Ledus.S1G335200"
Ledus.S1	AUGUSTUS	start_codon	27893502	27893504	.	-	0	transcript_id "Ledus.S1G335200.t1"; gene_id "Ledus.S1G335200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg366.t1 is derived from g7227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1958652	1960945	.	+	.	Ledus.S2G024800
Ledus.S2	AUGUSTUS	transcript	1958652	1960945	.	+	.	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	start_codon	1958652	1958654	.	+	0	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	CDS	1958652	1958720	0.85	+	0	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	exon	1958652	1958720	.	+	.	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	intron	1958721	1958854	.	+	.	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	CDS	1958855	1958924	1	+	0	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	exon	1958855	1958924	.	+	.	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	intron	1958925	1959021	.	+	.	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	CDS	1959022	1960160	1	+	2	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	exon	1959022	1960160	.	+	.	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	intron	1960161	1960243	.	+	.	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	CDS	1960244	1960315	1	+	0	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	exon	1960244	1960315	.	+	.	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	intron	1960316	1960539	.	+	.	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	CDS	1960540	1960659	1	+	0	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	exon	1960540	1960659	.	+	.	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	intron	1960660	1960780	.	+	.	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	CDS	1960781	1960945	1	+	0	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	exon	1960781	1960945	.	+	.	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
Ledus.S2	AUGUSTUS	stop_codon	1960946	1960948	.	+	0	transcript_id "Ledus.S2G024800.t1"; gene_id "Ledus.S2G024800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11646.t1 is derived from g5265.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5718660	5720730	.	-	.	Ledus.S4G080200
Ledus.S4	AUGUSTUS	transcript	5718660	5720730	.	-	.	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	stop_codon	5718657	5718659	.	-	0	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	CDS	5718660	5718864	1	-	1	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	exon	5718660	5718864	.	-	.	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	intron	5718865	5718975	.	-	.	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	CDS	5718976	5719142	1	-	0	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	exon	5718976	5719142	.	-	.	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	intron	5719143	5719238	.	-	.	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	CDS	5719239	5720325	0.96	-	1	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	exon	5719239	5720325	.	-	.	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	intron	5720326	5720533	.	-	.	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	CDS	5720534	5720730	0.9	-	0	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	exon	5720534	5720730	.	-	.	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
Ledus.S4	AUGUSTUS	start_codon	5720728	5720730	.	-	0	transcript_id "Ledus.S4G080200.t1"; gene_id "Ledus.S4G080200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4076.t1 is derived from g1512.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14486875	14489016	.	+	.	Ledus.S1G149700
Ledus.S1	AUGUSTUS	transcript	14486875	14487505	.	+	.	transcript_id "Ledus.S1G149700.t1"; gene_id "Ledus.S1G149700"
Ledus.S1	AUGUSTUS	start_codon	14486875	14486877	.	+	0	transcript_id "Ledus.S1G149700.t1"; gene_id "Ledus.S1G149700"
Ledus.S1	AUGUSTUS	CDS	14486875	14487411	0.28	+	0	transcript_id "Ledus.S1G149700.t1"; gene_id "Ledus.S1G149700"
Ledus.S1	AUGUSTUS	exon	14486875	14487411	.	+	.	transcript_id "Ledus.S1G149700.t1"; gene_id "Ledus.S1G149700"
Ledus.S1	AUGUSTUS	intron	14487412	14487496	.	+	.	transcript_id "Ledus.S1G149700.t1"; gene_id "Ledus.S1G149700"
Ledus.S1	AUGUSTUS	CDS	14487497	14487505	0.86	+	0	transcript_id "Ledus.S1G149700.t1"; gene_id "Ledus.S1G149700"
Ledus.S1	AUGUSTUS	exon	14487497	14487505	.	+	.	transcript_id "Ledus.S1G149700.t1"; gene_id "Ledus.S1G149700"
Ledus.S1	AUGUSTUS	stop_codon	14487506	14487508	.	+	0	transcript_id "Ledus.S1G149700.t1"; gene_id "Ledus.S1G149700"
Ledus.S1	AUGUSTUS	transcript	14486875	14489016	.	+	.	transcript_id "Ledus.S1G149700.t2"; gene_id "Ledus.S1G149700"
Ledus.S1	AUGUSTUS	start_codon	14486875	14486877	.	+	0	transcript_id "Ledus.S1G149700.t2"; gene_id "Ledus.S1G149700"
Ledus.S1	AUGUSTUS	CDS	14486875	14489016	0.65	+	0	transcript_id "Ledus.S1G149700.t2"; gene_id "Ledus.S1G149700"
Ledus.S1	AUGUSTUS	exon	14486875	14489016	.	+	.	transcript_id "Ledus.S1G149700.t2"; gene_id "Ledus.S1G149700"
Ledus.S1	AUGUSTUS	stop_codon	14489017	14489019	.	+	0	transcript_id "Ledus.S1G149700.t2"; gene_id "Ledus.S1G149700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13070.t1 is derived from g6880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4921398	4921715	.	-	.	Ledus.S6G013200
Ledus.S6	AUGUSTUS	transcript	4921398	4921715	.	-	.	transcript_id "Ledus.S6G013200.t1"; gene_id "Ledus.S6G013200"
Ledus.S6	AUGUSTUS	stop_codon	4921395	4921397	.	-	0	transcript_id "Ledus.S6G013200.t1"; gene_id "Ledus.S6G013200"
Ledus.S6	AUGUSTUS	CDS	4921398	4921715	0.28	-	0	transcript_id "Ledus.S6G013200.t1"; gene_id "Ledus.S6G013200"
Ledus.S6	AUGUSTUS	exon	4921398	4921715	.	-	.	transcript_id "Ledus.S6G013200.t1"; gene_id "Ledus.S6G013200"
Ledus.S6	AUGUSTUS	start_codon	4921713	4921715	.	-	0	transcript_id "Ledus.S6G013200.t1"; gene_id "Ledus.S6G013200"
# This transcript jg9698.t2 is derived from g10728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9699.t1 is derived from g10729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9100396	9101554	.	+	.	Ledus.S3G117600
Ledus.S3	AUGUSTUS	transcript	9100396	9101554	.	+	.	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	start_codon	9100396	9100398	.	+	0	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	CDS	9100396	9100540	0.87	+	0	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	exon	9100396	9100540	.	+	.	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	intron	9100541	9100659	.	+	.	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	CDS	9100660	9100727	1	+	2	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	exon	9100660	9100727	.	+	.	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	intron	9100728	9100798	.	+	.	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	CDS	9100799	9100914	0.99	+	0	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	exon	9100799	9100914	.	+	.	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	intron	9100915	9101040	.	+	.	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	CDS	9101041	9101554	0.73	+	1	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	exon	9101041	9101554	.	+	.	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
Ledus.S3	AUGUSTUS	stop_codon	9101555	9101557	.	+	0	transcript_id "Ledus.S3G117600.t1"; gene_id "Ledus.S3G117600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg655.t1 is derived from g7516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3917461	3921896	.	-	.	Ledus.S2G053700
Ledus.S2	AUGUSTUS	transcript	3917461	3921896	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	stop_codon	3917458	3917460	.	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3917461	3917679	0.93	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3917461	3917679	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3917680	3917788	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3917789	3917938	0.96	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3917789	3917938	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3917939	3918031	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3918032	3918196	1	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3918032	3918196	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3918197	3918331	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3918332	3918497	1	-	1	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3918332	3918497	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3918498	3918660	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3918661	3918763	0.58	-	2	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3918661	3918763	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3918764	3919019	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3919020	3919700	0.6	-	2	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3919020	3919700	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3919701	3919799	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3919800	3919997	1	-	2	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3919800	3919997	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3919998	3920149	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3920150	3920213	1	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3920150	3920213	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3920214	3920360	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3920361	3920408	1	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3920361	3920408	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3920409	3920584	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3920585	3920653	1	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3920585	3920653	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3920654	3920764	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3920765	3920884	0.96	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3920765	3920884	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3920885	3920976	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3920977	3921177	1	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3920977	3921177	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3921178	3921323	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3921324	3921422	1	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3921324	3921422	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3921423	3921540	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3921541	3921621	0.89	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3921541	3921621	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	intron	3921622	3921743	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	CDS	3921744	3921896	0.86	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	exon	3921744	3921896	.	-	.	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
Ledus.S2	AUGUSTUS	start_codon	3921894	3921896	.	-	0	transcript_id "Ledus.S2G053700.t1"; gene_id "Ledus.S2G053700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9464.t1 is derived from g10494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7154315	7156777	.	-	.	Ledus.S3G094100
Ledus.S3	AUGUSTUS	transcript	7154315	7156777	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	stop_codon	7154312	7154314	.	-	0	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	CDS	7154315	7154497	1	-	0	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	exon	7154315	7154497	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	intron	7154498	7154585	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	CDS	7154586	7154744	0.99	-	0	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	exon	7154586	7154744	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	intron	7154745	7154853	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	CDS	7154854	7154956	1	-	1	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	exon	7154854	7154956	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	intron	7154957	7155067	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	CDS	7155068	7155240	1	-	0	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	exon	7155068	7155240	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	intron	7155241	7155334	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	CDS	7155335	7155496	1	-	0	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	exon	7155335	7155496	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	intron	7155497	7155591	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	CDS	7155592	7155686	1	-	2	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	exon	7155592	7155686	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	intron	7155687	7156200	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	CDS	7156201	7156777	0.99	-	0	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	exon	7156201	7156777	.	-	.	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
Ledus.S3	AUGUSTUS	start_codon	7156775	7156777	.	-	0	transcript_id "Ledus.S3G094100.t1"; gene_id "Ledus.S3G094100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2216.t1 is derived from g9079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16132666	16132970	.	-	.	Ledus.S2G209800
Ledus.S2	AUGUSTUS	transcript	16132666	16132970	.	-	.	transcript_id "Ledus.S2G209800.t1"; gene_id "Ledus.S2G209800"
Ledus.S2	AUGUSTUS	stop_codon	16132663	16132665	.	-	0	transcript_id "Ledus.S2G209800.t1"; gene_id "Ledus.S2G209800"
Ledus.S2	AUGUSTUS	CDS	16132666	16132732	0.59	-	1	transcript_id "Ledus.S2G209800.t1"; gene_id "Ledus.S2G209800"
Ledus.S2	AUGUSTUS	exon	16132666	16132732	.	-	.	transcript_id "Ledus.S2G209800.t1"; gene_id "Ledus.S2G209800"
Ledus.S2	AUGUSTUS	intron	16132733	16132824	.	-	.	transcript_id "Ledus.S2G209800.t1"; gene_id "Ledus.S2G209800"
Ledus.S2	AUGUSTUS	CDS	16132825	16132970	0.59	-	0	transcript_id "Ledus.S2G209800.t1"; gene_id "Ledus.S2G209800"
Ledus.S2	AUGUSTUS	exon	16132825	16132970	.	-	.	transcript_id "Ledus.S2G209800.t1"; gene_id "Ledus.S2G209800"
Ledus.S2	AUGUSTUS	start_codon	16132968	16132970	.	-	0	transcript_id "Ledus.S2G209800.t1"; gene_id "Ledus.S2G209800"
# This transcript jg4378.t2 is derived from g1814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4379.t1 is derived from g1815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16714923	16716092	.	+	.	Ledus.S1G180000
Ledus.S1	AUGUSTUS	transcript	16714923	16716092	.	+	.	transcript_id "Ledus.S1G180000.t1"; gene_id "Ledus.S1G180000"
Ledus.S1	AUGUSTUS	start_codon	16714923	16714925	.	+	0	transcript_id "Ledus.S1G180000.t1"; gene_id "Ledus.S1G180000"
Ledus.S1	AUGUSTUS	CDS	16714923	16715604	0.5	+	0	transcript_id "Ledus.S1G180000.t1"; gene_id "Ledus.S1G180000"
Ledus.S1	AUGUSTUS	exon	16714923	16715604	.	+	.	transcript_id "Ledus.S1G180000.t1"; gene_id "Ledus.S1G180000"
Ledus.S1	AUGUSTUS	intron	16715605	16715811	.	+	.	transcript_id "Ledus.S1G180000.t1"; gene_id "Ledus.S1G180000"
Ledus.S1	AUGUSTUS	CDS	16715812	16716092	0.99	+	2	transcript_id "Ledus.S1G180000.t1"; gene_id "Ledus.S1G180000"
Ledus.S1	AUGUSTUS	exon	16715812	16716092	.	+	.	transcript_id "Ledus.S1G180000.t1"; gene_id "Ledus.S1G180000"
Ledus.S1	AUGUSTUS	stop_codon	16716093	16716095	.	+	0	transcript_id "Ledus.S1G180000.t1"; gene_id "Ledus.S1G180000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9667.t1 is derived from g10697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8946514	8947866	.	+	.	Ledus.S3G114400
Ledus.S3	AUGUSTUS	transcript	8946514	8947866	.	+	.	transcript_id "Ledus.S3G114400.t1"; gene_id "Ledus.S3G114400"
Ledus.S3	AUGUSTUS	start_codon	8946514	8946516	.	+	0	transcript_id "Ledus.S3G114400.t1"; gene_id "Ledus.S3G114400"
Ledus.S3	AUGUSTUS	CDS	8946514	8947866	0.88	+	0	transcript_id "Ledus.S3G114400.t1"; gene_id "Ledus.S3G114400"
Ledus.S3	AUGUSTUS	exon	8946514	8947866	.	+	.	transcript_id "Ledus.S3G114400.t1"; gene_id "Ledus.S3G114400"
Ledus.S3	AUGUSTUS	stop_codon	8947867	8947869	.	+	0	transcript_id "Ledus.S3G114400.t1"; gene_id "Ledus.S3G114400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10452.t1 is derived from g11482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15232403	15245682	.	+	.	Ledus.S3G192900
Ledus.S3	AUGUSTUS	transcript	15232403	15245682	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	start_codon	15232403	15232405	.	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15232403	15232708	0.23	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15232403	15232708	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15232709	15232827	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15232828	15232974	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15232828	15232974	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15232975	15233067	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15233068	15233166	0.97	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15233068	15233166	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15233167	15233274	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15233275	15233403	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15233275	15233403	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15233404	15233506	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15233507	15233599	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15233507	15233599	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15233600	15233773	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15233774	15233839	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15233774	15233839	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15233840	15233983	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15233984	15234073	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15233984	15234073	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15234074	15234212	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15234213	15234290	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15234213	15234290	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15234291	15234383	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15234384	15234505	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15234384	15234505	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15234506	15234582	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15234583	15234691	1	+	1	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15234583	15234691	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15234692	15234811	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15234812	15234904	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15234812	15234904	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15234905	15234993	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15234994	15235042	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15234994	15235042	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15235043	15235219	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15235220	15235323	1	+	2	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15235220	15235323	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15235324	15235457	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15235458	15235526	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15235458	15235526	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15235527	15235653	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15235654	15235797	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15235654	15235797	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15235798	15235872	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15235873	15235977	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15235873	15235977	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15235978	15236058	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15236059	15236172	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15236059	15236172	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15236173	15236337	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15236338	15236413	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15236338	15236413	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15236414	15236599	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15236600	15236643	1	+	2	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15236600	15236643	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15236644	15236725	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15236726	15236799	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15236726	15236799	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15236800	15236935	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15236936	15237038	1	+	1	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15236936	15237038	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15237039	15237163	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15237164	15237298	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15237164	15237298	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15237299	15237385	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15237386	15237484	0.73	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15237386	15237484	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15237485	15237600	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15237601	15237642	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15237601	15237642	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15237643	15237732	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15237733	15237786	0.99	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15237733	15237786	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15237787	15237894	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15237895	15238074	0.95	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15237895	15238074	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15238075	15238175	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15238176	15238223	0.96	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15238176	15238223	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15238224	15238325	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15238326	15238391	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15238326	15238391	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15238392	15238616	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15238617	15238700	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15238617	15238700	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15238701	15238777	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15238778	15238852	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15238778	15238852	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15238853	15238927	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15238928	15239112	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15238928	15239112	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15239113	15239203	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15239204	15239306	1	+	1	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15239204	15239306	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15239307	15239580	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15239581	15239697	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15239581	15239697	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15239698	15239805	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15239806	15239898	0.99	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15239806	15239898	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15239899	15240025	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15240026	15240175	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15240026	15240175	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15240176	15240286	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15240287	15240340	0.98	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15240287	15240340	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15240341	15240452	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15240453	15240566	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15240453	15240566	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15240567	15240653	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15240654	15240731	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15240654	15240731	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15240732	15240908	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15240909	15241058	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15240909	15241058	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15241059	15241160	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15241161	15241232	0.99	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15241161	15241232	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15241233	15241333	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15241334	15241489	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15241334	15241489	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15241490	15241586	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15241587	15241640	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15241587	15241640	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15241641	15241796	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15241797	15241890	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15241797	15241890	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15241891	15241961	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15241962	15242074	1	+	2	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15241962	15242074	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15242075	15242334	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15242335	15242442	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15242335	15242442	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15242443	15242643	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15242644	15242694	1	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15242644	15242694	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15242695	15242824	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15242825	15243505	0.96	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15242825	15243505	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15243506	15243657	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15243658	15245310	0.73	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15243658	15245310	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15245311	15245429	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15245430	15245493	0.99	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15245430	15245493	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	intron	15245494	15245584	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	CDS	15245585	15245682	0.99	+	2	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	exon	15245585	15245682	.	+	.	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
Ledus.S3	AUGUSTUS	stop_codon	15245683	15245685	.	+	0	transcript_id "Ledus.S3G192900.t1"; gene_id "Ledus.S3G192900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3730.t1 is derived from g1166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11231605	11232288	.	+	.	Ledus.S1G115100
Ledus.S1	AUGUSTUS	transcript	11231605	11232288	.	+	.	transcript_id "Ledus.S1G115100.t1"; gene_id "Ledus.S1G115100"
Ledus.S1	AUGUSTUS	start_codon	11231605	11231607	.	+	0	transcript_id "Ledus.S1G115100.t1"; gene_id "Ledus.S1G115100"
Ledus.S1	AUGUSTUS	CDS	11231605	11231986	0.46	+	0	transcript_id "Ledus.S1G115100.t1"; gene_id "Ledus.S1G115100"
Ledus.S1	AUGUSTUS	exon	11231605	11231986	.	+	.	transcript_id "Ledus.S1G115100.t1"; gene_id "Ledus.S1G115100"
Ledus.S1	AUGUSTUS	intron	11231987	11232085	.	+	.	transcript_id "Ledus.S1G115100.t1"; gene_id "Ledus.S1G115100"
Ledus.S1	AUGUSTUS	CDS	11232086	11232288	0.47	+	2	transcript_id "Ledus.S1G115100.t1"; gene_id "Ledus.S1G115100"
Ledus.S1	AUGUSTUS	exon	11232086	11232288	.	+	.	transcript_id "Ledus.S1G115100.t1"; gene_id "Ledus.S1G115100"
Ledus.S1	AUGUSTUS	stop_codon	11232289	11232291	.	+	0	transcript_id "Ledus.S1G115100.t1"; gene_id "Ledus.S1G115100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11156.t1 is derived from g4774.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2234427	2234780	.	+	.	Ledus.S4G031200
Ledus.S4	AUGUSTUS	transcript	2234427	2234780	.	+	.	transcript_id "Ledus.S4G031200.t1"; gene_id "Ledus.S4G031200"
Ledus.S4	AUGUSTUS	start_codon	2234427	2234429	.	+	0	transcript_id "Ledus.S4G031200.t1"; gene_id "Ledus.S4G031200"
Ledus.S4	AUGUSTUS	CDS	2234427	2234780	0.47	+	0	transcript_id "Ledus.S4G031200.t1"; gene_id "Ledus.S4G031200"
Ledus.S4	AUGUSTUS	exon	2234427	2234780	.	+	.	transcript_id "Ledus.S4G031200.t1"; gene_id "Ledus.S4G031200"
Ledus.S4	AUGUSTUS	stop_codon	2234781	2234783	.	+	0	transcript_id "Ledus.S4G031200.t1"; gene_id "Ledus.S4G031200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1819.t1 is derived from g8682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12739760	12740556	.	-	.	Ledus.S2G170100
Ledus.S2	AUGUSTUS	transcript	12739760	12740556	.	-	.	transcript_id "Ledus.S2G170100.t1"; gene_id "Ledus.S2G170100"
Ledus.S2	AUGUSTUS	stop_codon	12739757	12739759	.	-	0	transcript_id "Ledus.S2G170100.t1"; gene_id "Ledus.S2G170100"
Ledus.S2	AUGUSTUS	CDS	12739760	12739886	1	-	1	transcript_id "Ledus.S2G170100.t1"; gene_id "Ledus.S2G170100"
Ledus.S2	AUGUSTUS	exon	12739760	12739886	.	-	.	transcript_id "Ledus.S2G170100.t1"; gene_id "Ledus.S2G170100"
Ledus.S2	AUGUSTUS	intron	12739887	12740052	.	-	.	transcript_id "Ledus.S2G170100.t1"; gene_id "Ledus.S2G170100"
Ledus.S2	AUGUSTUS	CDS	12740053	12740234	1	-	0	transcript_id "Ledus.S2G170100.t1"; gene_id "Ledus.S2G170100"
Ledus.S2	AUGUSTUS	exon	12740053	12740234	.	-	.	transcript_id "Ledus.S2G170100.t1"; gene_id "Ledus.S2G170100"
Ledus.S2	AUGUSTUS	intron	12740235	12740427	.	-	.	transcript_id "Ledus.S2G170100.t1"; gene_id "Ledus.S2G170100"
Ledus.S2	AUGUSTUS	CDS	12740428	12740556	0.56	-	0	transcript_id "Ledus.S2G170100.t1"; gene_id "Ledus.S2G170100"
Ledus.S2	AUGUSTUS	exon	12740428	12740556	.	-	.	transcript_id "Ledus.S2G170100.t1"; gene_id "Ledus.S2G170100"
Ledus.S2	AUGUSTUS	start_codon	12740554	12740556	.	-	0	transcript_id "Ledus.S2G170100.t1"; gene_id "Ledus.S2G170100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg10221.t1 is derived from g11251.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13642903	13644646	.	+	.	Ledus.S3G169800
Ledus.S3	AUGUSTUS	transcript	13642903	13644443	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	start_codon	13642903	13642905	.	+	0	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13642903	13642990	0.69	+	0	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13642903	13642990	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13642991	13643069	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643070	13643122	1	+	2	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643070	13643122	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643123	13643326	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643327	13643403	0.96	+	0	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643327	13643403	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643404	13643480	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643481	13643535	0.96	+	1	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643481	13643535	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643536	13643834	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643835	13643970	0.83	+	0	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643835	13643970	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643971	13644180	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13644181	13644324	0.35	+	2	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13644181	13644324	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13644325	13644414	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13644415	13644443	0.63	+	2	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13644415	13644443	.	+	.	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	stop_codon	13644444	13644446	.	+	0	transcript_id "Ledus.S3G169800.t1"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	transcript	13642903	13644646	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	start_codon	13642903	13642905	.	+	0	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13642903	13642990	0.6	+	0	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13642903	13642990	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13642991	13643069	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643070	13643122	1	+	2	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643070	13643122	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643123	13643326	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643327	13643403	0.96	+	0	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643327	13643403	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643404	13643480	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643481	13643535	0.96	+	1	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643481	13643535	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643536	13643834	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643835	13643970	0.95	+	0	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643835	13643970	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643971	13644180	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13644181	13644324	0.38	+	2	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13644181	13644324	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13644325	13644437	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13644438	13644646	0.69	+	2	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13644438	13644646	.	+	.	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	stop_codon	13644647	13644649	.	+	0	transcript_id "Ledus.S3G169800.t2"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	transcript	13642903	13643672	.	+	.	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	start_codon	13642903	13642905	.	+	0	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13642903	13642990	0.51	+	0	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13642903	13642990	.	+	.	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13642991	13643069	.	+	.	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643070	13643122	1	+	2	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643070	13643122	.	+	.	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643123	13643326	.	+	.	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643327	13643403	0.79	+	0	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643327	13643403	.	+	.	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643404	13643480	.	+	.	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643481	13643535	0.77	+	1	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643481	13643535	.	+	.	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643536	13643624	.	+	.	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643625	13643672	0.34	+	0	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643625	13643672	.	+	.	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	stop_codon	13643673	13643675	.	+	0	transcript_id "Ledus.S3G169800.t3"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	transcript	13643544	13644443	.	+	.	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	start_codon	13643544	13643546	.	+	0	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643544	13643564	0.96	+	0	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643544	13643564	.	+	.	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643565	13643834	.	+	.	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13643835	13643970	0.86	+	0	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13643835	13643970	.	+	.	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13643971	13644180	.	+	.	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13644181	13644324	0.24	+	2	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13644181	13644324	.	+	.	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	intron	13644325	13644414	.	+	.	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	CDS	13644415	13644443	0.59	+	2	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	exon	13644415	13644443	.	+	.	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
Ledus.S3	AUGUSTUS	stop_codon	13644444	13644446	.	+	0	transcript_id "Ledus.S3G169800.t4"; gene_id "Ledus.S3G169800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg1553.t1 is derived from g8414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10900994	10904748	.	-	.	Ledus.S2G143500
Ledus.S2	AUGUSTUS	transcript	10900994	10904748	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	stop_codon	10900991	10900993	.	-	0	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10900994	10901104	0.97	-	0	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10900994	10901104	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10901105	10901250	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10901251	10901362	1	-	1	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10901251	10901362	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10901363	10901442	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10901443	10901667	1	-	1	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10901443	10901667	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10901668	10901775	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10901776	10901831	1	-	0	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10901776	10901831	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10901832	10901980	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10901981	10902022	1	-	0	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10901981	10902022	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10902023	10902250	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10902251	10902402	1	-	2	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10902251	10902402	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10902403	10902578	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10902579	10902712	0.96	-	1	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10902579	10902712	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10902713	10902830	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10902831	10902964	0.91	-	0	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10902831	10902964	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10902965	10903077	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10903078	10903179	0.99	-	0	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10903078	10903179	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10903180	10903346	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10903347	10903452	1	-	1	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10903347	10903452	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10903453	10903659	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10903660	10903785	1	-	1	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10903660	10903785	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10903786	10904377	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10904378	10904748	0.62	-	0	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10904378	10904748	.	-	.	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	start_codon	10904746	10904748	.	-	0	transcript_id "Ledus.S2G143500.t1"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	transcript	10900994	10904748	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	stop_codon	10900991	10900993	.	-	0	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10900994	10901104	0.95	-	0	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10900994	10901104	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10901105	10901250	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10901251	10901362	1	-	1	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10901251	10901362	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10901363	10901442	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10901443	10901667	1	-	1	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10901443	10901667	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10901668	10901775	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10901776	10901831	1	-	0	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10901776	10901831	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10901832	10901980	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10901981	10902022	1	-	0	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10901981	10902022	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10902023	10902250	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10902251	10902402	1	-	2	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10902251	10902402	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10902403	10902578	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10902579	10902712	0.97	-	1	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10902579	10902712	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10902713	10902830	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10902831	10902964	0.88	-	0	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10902831	10902964	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10902965	10903077	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10903078	10903179	1	-	0	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10903078	10903179	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10903180	10903346	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10903347	10903452	1	-	1	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10903347	10903452	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10903453	10903659	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10903660	10903785	1	-	1	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10903660	10903785	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10903786	10904005	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10904006	10904031	0.99	-	0	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10904006	10904031	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10904032	10904412	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10904413	10904748	0.59	-	0	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10904413	10904748	.	-	.	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	start_codon	10904746	10904748	.	-	0	transcript_id "Ledus.S2G143500.t2"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	transcript	10900994	10904748	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	stop_codon	10900991	10900993	.	-	0	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10900994	10901104	0.97	-	0	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10900994	10901104	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10901105	10901250	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10901251	10901362	1	-	1	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10901251	10901362	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10901363	10901442	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10901443	10901667	1	-	1	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10901443	10901667	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10901668	10901775	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10901776	10901831	1	-	0	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10901776	10901831	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10901832	10901980	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10901981	10902022	1	-	0	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10901981	10902022	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10902023	10902250	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10902251	10902402	1	-	2	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10902251	10902402	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10902403	10902578	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10902579	10902712	0.98	-	1	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10902579	10902712	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10902713	10902830	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10902831	10902964	0.93	-	0	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10902831	10902964	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10902965	10903077	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10903078	10903179	1	-	0	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10903078	10903179	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10903180	10903346	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10903347	10903452	1	-	1	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10903347	10903452	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10903453	10903659	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10903660	10903756	1	-	2	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10903660	10903756	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10903757	10903846	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10903847	10903867	1	-	2	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10903847	10903867	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10903868	10904005	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10904006	10904250	0.6	-	1	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10904006	10904250	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	intron	10904251	10904377	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	CDS	10904378	10904748	0.38	-	0	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	exon	10904378	10904748	.	-	.	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
Ledus.S2	AUGUSTUS	start_codon	10904746	10904748	.	-	0	transcript_id "Ledus.S2G143500.t3"; gene_id "Ledus.S2G143500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5636.t1 is derived from g3075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25464509	25466573	.	-	.	Ledus.S1G305700
Ledus.S1	AUGUSTUS	transcript	25464509	25466573	.	-	.	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	stop_codon	25464506	25464508	.	-	0	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	CDS	25464509	25464523	0.34	-	0	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	exon	25464509	25464523	.	-	.	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	intron	25464524	25464749	.	-	.	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	CDS	25464750	25464907	0.29	-	2	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	exon	25464750	25464907	.	-	.	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	intron	25464908	25465261	.	-	.	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	CDS	25465262	25466133	0.57	-	1	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	exon	25465262	25466133	.	-	.	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	intron	25466134	25466226	.	-	.	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	CDS	25466227	25466573	0.98	-	0	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	exon	25466227	25466573	.	-	.	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
Ledus.S1	AUGUSTUS	start_codon	25466571	25466573	.	-	0	transcript_id "Ledus.S1G305700.t1"; gene_id "Ledus.S1G305700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2747.t1 is derived from g181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2969916	2970633	.	-	.	Ledus.S1G016800
Ledus.S1	AUGUSTUS	transcript	2969916	2970633	.	-	.	transcript_id "Ledus.S1G016800.t1"; gene_id "Ledus.S1G016800"
Ledus.S1	AUGUSTUS	stop_codon	2969913	2969915	.	-	0	transcript_id "Ledus.S1G016800.t1"; gene_id "Ledus.S1G016800"
Ledus.S1	AUGUSTUS	CDS	2969916	2969979	0.52	-	1	transcript_id "Ledus.S1G016800.t1"; gene_id "Ledus.S1G016800"
Ledus.S1	AUGUSTUS	exon	2969916	2969979	.	-	.	transcript_id "Ledus.S1G016800.t1"; gene_id "Ledus.S1G016800"
Ledus.S1	AUGUSTUS	intron	2969980	2970257	.	-	.	transcript_id "Ledus.S1G016800.t1"; gene_id "Ledus.S1G016800"
Ledus.S1	AUGUSTUS	CDS	2970258	2970423	0.22	-	2	transcript_id "Ledus.S1G016800.t1"; gene_id "Ledus.S1G016800"
Ledus.S1	AUGUSTUS	exon	2970258	2970423	.	-	.	transcript_id "Ledus.S1G016800.t1"; gene_id "Ledus.S1G016800"
Ledus.S1	AUGUSTUS	intron	2970424	2970551	.	-	.	transcript_id "Ledus.S1G016800.t1"; gene_id "Ledus.S1G016800"
Ledus.S1	AUGUSTUS	CDS	2970552	2970633	0.61	-	0	transcript_id "Ledus.S1G016800.t1"; gene_id "Ledus.S1G016800"
Ledus.S1	AUGUSTUS	exon	2970552	2970633	.	-	.	transcript_id "Ledus.S1G016800.t1"; gene_id "Ledus.S1G016800"
Ledus.S1	AUGUSTUS	start_codon	2970631	2970633	.	-	0	transcript_id "Ledus.S1G016800.t1"; gene_id "Ledus.S1G016800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6116.t1 is derived from g3559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28972003	28974367	.	+	.	Ledus.S1G353700
Ledus.S1	AUGUSTUS	transcript	28972003	28974367	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	start_codon	28972003	28972005	.	+	0	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	CDS	28972003	28972075	0.81	+	0	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	exon	28972003	28972075	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	intron	28972076	28972156	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	CDS	28972157	28972279	1	+	2	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	exon	28972157	28972279	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	intron	28972280	28972365	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	CDS	28972366	28972615	1	+	2	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	exon	28972366	28972615	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	intron	28972616	28972816	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	CDS	28972817	28972878	1	+	1	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	exon	28972817	28972878	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	intron	28972879	28973046	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	CDS	28973047	28973195	1	+	2	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	exon	28973047	28973195	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	intron	28973196	28973292	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	CDS	28973293	28973413	1	+	0	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	exon	28973293	28973413	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	intron	28973414	28973600	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	CDS	28973601	28973756	1	+	2	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	exon	28973601	28973756	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	intron	28973757	28973849	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	CDS	28973850	28973895	1	+	2	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	exon	28973850	28973895	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	intron	28973896	28973995	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	CDS	28973996	28974068	1	+	1	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	exon	28973996	28974068	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	intron	28974069	28974148	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	CDS	28974149	28974225	1	+	0	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	exon	28974149	28974225	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	intron	28974226	28974324	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	CDS	28974325	28974367	0.95	+	1	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	exon	28974325	28974367	.	+	.	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
Ledus.S1	AUGUSTUS	stop_codon	28974368	28974370	.	+	0	transcript_id "Ledus.S1G353700.t1"; gene_id "Ledus.S1G353700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12824.t1 is derived from g6446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15073178	15075598	.	+	.	Ledus.S4G198000
Ledus.S4	AUGUSTUS	transcript	15073178	15075598	.	+	.	transcript_id "Ledus.S4G198000.t1"; gene_id "Ledus.S4G198000"
Ledus.S4	AUGUSTUS	start_codon	15073178	15073180	.	+	0	transcript_id "Ledus.S4G198000.t1"; gene_id "Ledus.S4G198000"
Ledus.S4	AUGUSTUS	CDS	15073178	15075598	0.89	+	0	transcript_id "Ledus.S4G198000.t1"; gene_id "Ledus.S4G198000"
Ledus.S4	AUGUSTUS	exon	15073178	15075598	.	+	.	transcript_id "Ledus.S4G198000.t1"; gene_id "Ledus.S4G198000"
Ledus.S4	AUGUSTUS	stop_codon	15075599	15075601	.	+	0	transcript_id "Ledus.S4G198000.t1"; gene_id "Ledus.S4G198000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9236.t1 is derived from g10266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5544326	5545683	.	+	.	Ledus.S3G071300
Ledus.S3	AUGUSTUS	transcript	5544326	5545683	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	start_codon	5544326	5544328	.	+	0	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	CDS	5544326	5544394	0.97	+	0	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	exon	5544326	5544394	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	intron	5544395	5544485	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	CDS	5544486	5544528	1	+	0	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	exon	5544486	5544528	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	intron	5544529	5544621	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	CDS	5544622	5544683	0.81	+	2	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	exon	5544622	5544683	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	intron	5544684	5544798	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	CDS	5544799	5544895	0.97	+	0	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	exon	5544799	5544895	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	intron	5544896	5545016	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	CDS	5545017	5545087	0.99	+	2	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	exon	5545017	5545087	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	intron	5545088	5545407	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	CDS	5545408	5545499	1	+	0	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	exon	5545408	5545499	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	intron	5545500	5545628	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	CDS	5545629	5545683	1	+	1	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	exon	5545629	5545683	.	+	.	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
Ledus.S3	AUGUSTUS	stop_codon	5545684	5545686	.	+	0	transcript_id "Ledus.S3G071300.t1"; gene_id "Ledus.S3G071300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1720.t1 is derived from g8581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12125689	12126365	.	-	.	Ledus.S2G160200
Ledus.S2	AUGUSTUS	transcript	12125689	12126365	.	-	.	transcript_id "Ledus.S2G160200.t1"; gene_id "Ledus.S2G160200"
Ledus.S2	AUGUSTUS	stop_codon	12125686	12125688	.	-	0	transcript_id "Ledus.S2G160200.t1"; gene_id "Ledus.S2G160200"
Ledus.S2	AUGUSTUS	CDS	12125689	12126129	0.9	-	0	transcript_id "Ledus.S2G160200.t1"; gene_id "Ledus.S2G160200"
Ledus.S2	AUGUSTUS	exon	12125689	12126129	.	-	.	transcript_id "Ledus.S2G160200.t1"; gene_id "Ledus.S2G160200"
Ledus.S2	AUGUSTUS	intron	12126130	12126218	.	-	.	transcript_id "Ledus.S2G160200.t1"; gene_id "Ledus.S2G160200"
Ledus.S2	AUGUSTUS	CDS	12126219	12126365	0.93	-	0	transcript_id "Ledus.S2G160200.t1"; gene_id "Ledus.S2G160200"
Ledus.S2	AUGUSTUS	exon	12126219	12126365	.	-	.	transcript_id "Ledus.S2G160200.t1"; gene_id "Ledus.S2G160200"
Ledus.S2	AUGUSTUS	start_codon	12126363	12126365	.	-	0	transcript_id "Ledus.S2G160200.t1"; gene_id "Ledus.S2G160200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10903.t1 is derived from g4521.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	386789	388924	.	-	.	Ledus.S4G005900
Ledus.S4	AUGUSTUS	transcript	386789	388924	.	-	.	transcript_id "Ledus.S4G005900.t1"; gene_id "Ledus.S4G005900"
Ledus.S4	AUGUSTUS	stop_codon	386786	386788	.	-	0	transcript_id "Ledus.S4G005900.t1"; gene_id "Ledus.S4G005900"
Ledus.S4	AUGUSTUS	CDS	386789	388924	1	-	0	transcript_id "Ledus.S4G005900.t1"; gene_id "Ledus.S4G005900"
Ledus.S4	AUGUSTUS	exon	386789	388924	.	-	.	transcript_id "Ledus.S4G005900.t1"; gene_id "Ledus.S4G005900"
Ledus.S4	AUGUSTUS	start_codon	388922	388924	.	-	0	transcript_id "Ledus.S4G005900.t1"; gene_id "Ledus.S4G005900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6615.t1 is derived from g4058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32741772	32742288	.	-	.	Ledus.S1G403600
Ledus.S1	AUGUSTUS	transcript	32741772	32742288	.	-	.	transcript_id "Ledus.S1G403600.t1"; gene_id "Ledus.S1G403600"
Ledus.S1	AUGUSTUS	stop_codon	32741769	32741771	.	-	0	transcript_id "Ledus.S1G403600.t1"; gene_id "Ledus.S1G403600"
Ledus.S1	AUGUSTUS	CDS	32741772	32741990	1	-	0	transcript_id "Ledus.S1G403600.t1"; gene_id "Ledus.S1G403600"
Ledus.S1	AUGUSTUS	exon	32741772	32741990	.	-	.	transcript_id "Ledus.S1G403600.t1"; gene_id "Ledus.S1G403600"
Ledus.S1	AUGUSTUS	intron	32741991	32742084	.	-	.	transcript_id "Ledus.S1G403600.t1"; gene_id "Ledus.S1G403600"
Ledus.S1	AUGUSTUS	CDS	32742085	32742288	1	-	0	transcript_id "Ledus.S1G403600.t1"; gene_id "Ledus.S1G403600"
Ledus.S1	AUGUSTUS	exon	32742085	32742288	.	-	.	transcript_id "Ledus.S1G403600.t1"; gene_id "Ledus.S1G403600"
Ledus.S1	AUGUSTUS	start_codon	32742286	32742288	.	-	0	transcript_id "Ledus.S1G403600.t1"; gene_id "Ledus.S1G403600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 5 different transcripts
# This transcript jg13121.t1 is derived from g6931.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6367093	6368352	.	-	.	Ledus.S6G018300
Ledus.S6	AUGUSTUS	transcript	6367130	6368352	.	-	.	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	stop_codon	6367127	6367129	.	-	0	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367130	6367141	0.99	-	0	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367130	6367141	.	-	.	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367142	6367521	.	-	.	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367522	6367639	1	-	1	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367522	6367639	.	-	.	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367640	6367827	.	-	.	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367828	6367880	1	-	0	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367828	6367880	.	-	.	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367881	6367973	.	-	.	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367974	6368123	1	-	0	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367974	6368123	.	-	.	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6368124	6368283	.	-	.	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6368284	6368352	1	-	0	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6368284	6368352	.	-	.	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	start_codon	6368350	6368352	.	-	0	transcript_id "Ledus.S6G018300.t1"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	transcript	6367130	6368352	.	-	.	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	stop_codon	6367127	6367129	.	-	0	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367130	6367141	0.99	-	0	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367130	6367141	.	-	.	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367142	6367521	.	-	.	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367522	6367581	0.99	-	0	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367522	6367581	.	-	.	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367582	6367827	.	-	.	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367828	6367880	0.99	-	2	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367828	6367880	.	-	.	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367881	6368047	.	-	.	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6368048	6368123	0.99	-	0	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6368048	6368123	.	-	.	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6368124	6368283	.	-	.	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6368284	6368352	0.99	-	0	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6368284	6368352	.	-	.	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	start_codon	6368350	6368352	.	-	0	transcript_id "Ledus.S6G018300.t2"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	transcript	6367130	6368215	.	-	.	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	stop_codon	6367127	6367129	.	-	0	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367130	6367141	0.86	-	0	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367130	6367141	.	-	.	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367142	6367521	.	-	.	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367522	6367639	0.86	-	1	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367522	6367639	.	-	.	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367640	6367827	.	-	.	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367828	6367880	0.96	-	0	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367828	6367880	.	-	.	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367881	6367973	.	-	.	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367974	6368123	0.96	-	0	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367974	6368123	.	-	.	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6368124	6368197	.	-	.	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6368198	6368215	0.99	-	0	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6368198	6368215	.	-	.	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	start_codon	6368213	6368215	.	-	0	transcript_id "Ledus.S6G018300.t3"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	transcript	6367130	6368352	.	-	.	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	stop_codon	6367127	6367129	.	-	0	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367130	6367135	0.59	-	0	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367130	6367135	.	-	.	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367136	6367521	.	-	.	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367522	6367639	0.58	-	1	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367522	6367639	.	-	.	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367640	6367827	.	-	.	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367828	6367880	0.99	-	0	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367828	6367880	.	-	.	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367881	6367973	.	-	.	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367974	6368123	0.99	-	0	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367974	6368123	.	-	.	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6368124	6368283	.	-	.	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6368284	6368352	1	-	0	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6368284	6368352	.	-	.	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	start_codon	6368350	6368352	.	-	0	transcript_id "Ledus.S6G018300.t4"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	transcript	6367093	6368352	.	-	.	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	stop_codon	6367090	6367092	.	-	0	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367093	6367141	0.4	-	1	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367093	6367141	.	-	.	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367142	6367521	.	-	.	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367522	6367581	0.6	-	1	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367522	6367581	.	-	.	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367582	6367827	.	-	.	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367828	6367880	0.79	-	0	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367828	6367880	.	-	.	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6367881	6367973	.	-	.	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6367974	6368123	0.79	-	0	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6367974	6368123	.	-	.	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	intron	6368124	6368283	.	-	.	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	CDS	6368284	6368352	1	-	0	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	exon	6368284	6368352	.	-	.	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
Ledus.S6	AUGUSTUS	start_codon	6368350	6368352	.	-	0	transcript_id "Ledus.S6G018300.t5"; gene_id "Ledus.S6G018300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8399.t1 is derived from g13071.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11481230	11481520	.	+	.	Ledus.S5G117700
Ledus.S5	AUGUSTUS	transcript	11481230	11481520	.	+	.	transcript_id "Ledus.S5G117700.t1"; gene_id "Ledus.S5G117700"
Ledus.S5	AUGUSTUS	start_codon	11481230	11481232	.	+	0	transcript_id "Ledus.S5G117700.t1"; gene_id "Ledus.S5G117700"
Ledus.S5	AUGUSTUS	CDS	11481230	11481322	1	+	0	transcript_id "Ledus.S5G117700.t1"; gene_id "Ledus.S5G117700"
Ledus.S5	AUGUSTUS	exon	11481230	11481322	.	+	.	transcript_id "Ledus.S5G117700.t1"; gene_id "Ledus.S5G117700"
Ledus.S5	AUGUSTUS	intron	11481323	11481400	.	+	.	transcript_id "Ledus.S5G117700.t1"; gene_id "Ledus.S5G117700"
Ledus.S5	AUGUSTUS	CDS	11481401	11481520	1	+	0	transcript_id "Ledus.S5G117700.t1"; gene_id "Ledus.S5G117700"
Ledus.S5	AUGUSTUS	exon	11481401	11481520	.	+	.	transcript_id "Ledus.S5G117700.t1"; gene_id "Ledus.S5G117700"
Ledus.S5	AUGUSTUS	stop_codon	11481521	11481523	.	+	0	transcript_id "Ledus.S5G117700.t1"; gene_id "Ledus.S5G117700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4539.t1 is derived from g1976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17592138	17593001	.	+	.	Ledus.S1G196000
Ledus.S1	AUGUSTUS	transcript	17592138	17593001	.	+	.	transcript_id "Ledus.S1G196000.t1"; gene_id "Ledus.S1G196000"
Ledus.S1	AUGUSTUS	start_codon	17592138	17592140	.	+	0	transcript_id "Ledus.S1G196000.t1"; gene_id "Ledus.S1G196000"
Ledus.S1	AUGUSTUS	CDS	17592138	17592330	0.8	+	0	transcript_id "Ledus.S1G196000.t1"; gene_id "Ledus.S1G196000"
Ledus.S1	AUGUSTUS	exon	17592138	17592330	.	+	.	transcript_id "Ledus.S1G196000.t1"; gene_id "Ledus.S1G196000"
Ledus.S1	AUGUSTUS	intron	17592331	17592435	.	+	.	transcript_id "Ledus.S1G196000.t1"; gene_id "Ledus.S1G196000"
Ledus.S1	AUGUSTUS	CDS	17592436	17592804	0.92	+	2	transcript_id "Ledus.S1G196000.t1"; gene_id "Ledus.S1G196000"
Ledus.S1	AUGUSTUS	exon	17592436	17592804	.	+	.	transcript_id "Ledus.S1G196000.t1"; gene_id "Ledus.S1G196000"
Ledus.S1	AUGUSTUS	intron	17592805	17592960	.	+	.	transcript_id "Ledus.S1G196000.t1"; gene_id "Ledus.S1G196000"
Ledus.S1	AUGUSTUS	CDS	17592961	17593001	0.93	+	2	transcript_id "Ledus.S1G196000.t1"; gene_id "Ledus.S1G196000"
Ledus.S1	AUGUSTUS	exon	17592961	17593001	.	+	.	transcript_id "Ledus.S1G196000.t1"; gene_id "Ledus.S1G196000"
Ledus.S1	AUGUSTUS	stop_codon	17593002	17593004	.	+	0	transcript_id "Ledus.S1G196000.t1"; gene_id "Ledus.S1G196000"
# This transcript jg3124.t2 is derived from g559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3125.t1 is derived from g560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6150100	6151227	.	-	.	Ledus.S1G054600
Ledus.S1	AUGUSTUS	transcript	6150100	6151227	.	-	.	transcript_id "Ledus.S1G054600.t1"; gene_id "Ledus.S1G054600"
Ledus.S1	AUGUSTUS	stop_codon	6150097	6150099	.	-	0	transcript_id "Ledus.S1G054600.t1"; gene_id "Ledus.S1G054600"
Ledus.S1	AUGUSTUS	CDS	6150100	6151227	0.7	-	0	transcript_id "Ledus.S1G054600.t1"; gene_id "Ledus.S1G054600"
Ledus.S1	AUGUSTUS	exon	6150100	6151227	.	-	.	transcript_id "Ledus.S1G054600.t1"; gene_id "Ledus.S1G054600"
Ledus.S1	AUGUSTUS	start_codon	6151225	6151227	.	-	0	transcript_id "Ledus.S1G054600.t1"; gene_id "Ledus.S1G054600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2710.t1 is derived from g143.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2324590	2326458	.	-	.	Ledus.S1G013100
Ledus.S1	AUGUSTUS	transcript	2324590	2326458	.	-	.	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	stop_codon	2324587	2324589	.	-	0	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	CDS	2324590	2324664	0.87	-	0	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	exon	2324590	2324664	.	-	.	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	intron	2324665	2324767	.	-	.	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	CDS	2324768	2324959	0.94	-	0	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	exon	2324768	2324959	.	-	.	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	intron	2324960	2325085	.	-	.	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	CDS	2325086	2325162	1	-	2	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	exon	2325086	2325162	.	-	.	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	intron	2325163	2325350	.	-	.	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	CDS	2325351	2325452	1	-	2	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	exon	2325351	2325452	.	-	.	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	intron	2325453	2325538	.	-	.	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	CDS	2325539	2325590	1	-	0	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	exon	2325539	2325590	.	-	.	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	intron	2325591	2325711	.	-	.	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	CDS	2325712	2326458	0.99	-	0	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	exon	2325712	2326458	.	-	.	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	start_codon	2326456	2326458	.	-	0	transcript_id "Ledus.S1G013100.t1"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	transcript	2324590	2326458	.	-	.	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	stop_codon	2324587	2324589	.	-	0	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	CDS	2324590	2324664	0.89	-	0	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	exon	2324590	2324664	.	-	.	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	intron	2324665	2324767	.	-	.	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	CDS	2324768	2324959	0.92	-	0	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	exon	2324768	2324959	.	-	.	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	intron	2324960	2325085	.	-	.	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	CDS	2325086	2325159	1	-	2	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	exon	2325086	2325159	.	-	.	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	intron	2325160	2325350	.	-	.	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	CDS	2325351	2325452	1	-	2	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	exon	2325351	2325452	.	-	.	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	intron	2325453	2325538	.	-	.	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	CDS	2325539	2325590	1	-	0	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	exon	2325539	2325590	.	-	.	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	intron	2325591	2325711	.	-	.	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	CDS	2325712	2326458	0.93	-	0	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	exon	2325712	2326458	.	-	.	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
Ledus.S1	AUGUSTUS	start_codon	2326456	2326458	.	-	0	transcript_id "Ledus.S1G013100.t2"; gene_id "Ledus.S1G013100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12457.t1 is derived from g6078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12091590	12093263	.	-	.	Ledus.S4G161300
Ledus.S4	AUGUSTUS	transcript	12091590	12093263	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	stop_codon	12091587	12091589	.	-	0	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	CDS	12091590	12091590	0.72	-	1	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	exon	12091590	12091590	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	intron	12091591	12091729	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	CDS	12091730	12091779	0.39	-	0	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	exon	12091730	12091779	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	intron	12091780	12092038	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	CDS	12092039	12092150	0.84	-	1	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	exon	12092039	12092150	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	intron	12092151	12092320	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	CDS	12092321	12092402	0.99	-	2	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	exon	12092321	12092402	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	intron	12092403	12092498	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	CDS	12092499	12092619	1	-	0	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	exon	12092499	12092619	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	intron	12092620	12092762	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	CDS	12092763	12092888	1	-	0	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	exon	12092763	12092888	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	intron	12092889	12092969	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	CDS	12092970	12093263	0.92	-	0	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	exon	12092970	12093263	.	-	.	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
Ledus.S4	AUGUSTUS	start_codon	12093261	12093263	.	-	0	transcript_id "Ledus.S4G161300.t1"; gene_id "Ledus.S4G161300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8187.t1 is derived from g12858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9730314	9731747	.	+	.	Ledus.S5G096500
Ledus.S5	AUGUSTUS	transcript	9730314	9731747	.	+	.	transcript_id "Ledus.S5G096500.t1"; gene_id "Ledus.S5G096500"
Ledus.S5	AUGUSTUS	start_codon	9730314	9730316	.	+	0	transcript_id "Ledus.S5G096500.t1"; gene_id "Ledus.S5G096500"
Ledus.S5	AUGUSTUS	CDS	9730314	9731747	1	+	0	transcript_id "Ledus.S5G096500.t1"; gene_id "Ledus.S5G096500"
Ledus.S5	AUGUSTUS	exon	9730314	9731747	.	+	.	transcript_id "Ledus.S5G096500.t1"; gene_id "Ledus.S5G096500"
Ledus.S5	AUGUSTUS	stop_codon	9731748	9731750	.	+	0	transcript_id "Ledus.S5G096500.t1"; gene_id "Ledus.S5G096500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10736.t1 is derived from g11767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17411719	17413344	.	-	.	Ledus.S3G221300
Ledus.S3	AUGUSTUS	transcript	17411719	17413344	.	-	.	transcript_id "Ledus.S3G221300.t1"; gene_id "Ledus.S3G221300"
Ledus.S3	AUGUSTUS	stop_codon	17411716	17411718	.	-	0	transcript_id "Ledus.S3G221300.t1"; gene_id "Ledus.S3G221300"
Ledus.S3	AUGUSTUS	CDS	17411719	17411892	1	-	0	transcript_id "Ledus.S3G221300.t1"; gene_id "Ledus.S3G221300"
Ledus.S3	AUGUSTUS	exon	17411719	17411892	.	-	.	transcript_id "Ledus.S3G221300.t1"; gene_id "Ledus.S3G221300"
Ledus.S3	AUGUSTUS	intron	17411893	17411992	.	-	.	transcript_id "Ledus.S3G221300.t1"; gene_id "Ledus.S3G221300"
Ledus.S3	AUGUSTUS	CDS	17411993	17412242	1	-	1	transcript_id "Ledus.S3G221300.t1"; gene_id "Ledus.S3G221300"
Ledus.S3	AUGUSTUS	exon	17411993	17412242	.	-	.	transcript_id "Ledus.S3G221300.t1"; gene_id "Ledus.S3G221300"
Ledus.S3	AUGUSTUS	intron	17412243	17412322	.	-	.	transcript_id "Ledus.S3G221300.t1"; gene_id "Ledus.S3G221300"
Ledus.S3	AUGUSTUS	CDS	17412323	17413344	0.27	-	0	transcript_id "Ledus.S3G221300.t1"; gene_id "Ledus.S3G221300"
Ledus.S3	AUGUSTUS	exon	17412323	17413344	.	-	.	transcript_id "Ledus.S3G221300.t1"; gene_id "Ledus.S3G221300"
Ledus.S3	AUGUSTUS	start_codon	17413342	17413344	.	-	0	transcript_id "Ledus.S3G221300.t1"; gene_id "Ledus.S3G221300"
# This transcript jg3211.t2 is derived from g646.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3212.t1 is derived from g647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6884905	6885436	.	+	.	Ledus.S1G063300
Ledus.S1	AUGUSTUS	transcript	6884905	6885436	.	+	.	transcript_id "Ledus.S1G063300.t1"; gene_id "Ledus.S1G063300"
Ledus.S1	AUGUSTUS	start_codon	6884905	6884907	.	+	0	transcript_id "Ledus.S1G063300.t1"; gene_id "Ledus.S1G063300"
Ledus.S1	AUGUSTUS	CDS	6884905	6885148	0.36	+	0	transcript_id "Ledus.S1G063300.t1"; gene_id "Ledus.S1G063300"
Ledus.S1	AUGUSTUS	exon	6884905	6885148	.	+	.	transcript_id "Ledus.S1G063300.t1"; gene_id "Ledus.S1G063300"
Ledus.S1	AUGUSTUS	intron	6885149	6885302	.	+	.	transcript_id "Ledus.S1G063300.t1"; gene_id "Ledus.S1G063300"
Ledus.S1	AUGUSTUS	CDS	6885303	6885436	0.63	+	2	transcript_id "Ledus.S1G063300.t1"; gene_id "Ledus.S1G063300"
Ledus.S1	AUGUSTUS	exon	6885303	6885436	.	+	.	transcript_id "Ledus.S1G063300.t1"; gene_id "Ledus.S1G063300"
Ledus.S1	AUGUSTUS	stop_codon	6885437	6885439	.	+	0	transcript_id "Ledus.S1G063300.t1"; gene_id "Ledus.S1G063300"
# This transcript jg6239.t2 is derived from g3682.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6239.t3 is derived from g3682.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6239.t4 is derived from g3682.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6240.t1 is derived from g3683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29811521	29812692	.	-	.	Ledus.S1G366100
Ledus.S1	AUGUSTUS	transcript	29811521	29812692	.	-	.	transcript_id "Ledus.S1G366100.t1"; gene_id "Ledus.S1G366100"
Ledus.S1	AUGUSTUS	stop_codon	29811518	29811520	.	-	0	transcript_id "Ledus.S1G366100.t1"; gene_id "Ledus.S1G366100"
Ledus.S1	AUGUSTUS	CDS	29811521	29812139	0.88	-	1	transcript_id "Ledus.S1G366100.t1"; gene_id "Ledus.S1G366100"
Ledus.S1	AUGUSTUS	exon	29811521	29812139	.	-	.	transcript_id "Ledus.S1G366100.t1"; gene_id "Ledus.S1G366100"
Ledus.S1	AUGUSTUS	intron	29812140	29812232	.	-	.	transcript_id "Ledus.S1G366100.t1"; gene_id "Ledus.S1G366100"
Ledus.S1	AUGUSTUS	CDS	29812233	29812390	1	-	0	transcript_id "Ledus.S1G366100.t1"; gene_id "Ledus.S1G366100"
Ledus.S1	AUGUSTUS	exon	29812233	29812390	.	-	.	transcript_id "Ledus.S1G366100.t1"; gene_id "Ledus.S1G366100"
Ledus.S1	AUGUSTUS	intron	29812391	29812659	.	-	.	transcript_id "Ledus.S1G366100.t1"; gene_id "Ledus.S1G366100"
Ledus.S1	AUGUSTUS	CDS	29812660	29812692	0.73	-	0	transcript_id "Ledus.S1G366100.t1"; gene_id "Ledus.S1G366100"
Ledus.S1	AUGUSTUS	exon	29812660	29812692	.	-	.	transcript_id "Ledus.S1G366100.t1"; gene_id "Ledus.S1G366100"
Ledus.S1	AUGUSTUS	start_codon	29812690	29812692	.	-	0	transcript_id "Ledus.S1G366100.t1"; gene_id "Ledus.S1G366100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4301.t1 is derived from g1737.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16116496	16118768	.	-	.	Ledus.S1G172200
Ledus.S1	AUGUSTUS	transcript	16116496	16118768	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	stop_codon	16116493	16116495	.	-	0	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	CDS	16116496	16116586	0.96	-	1	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	exon	16116496	16116586	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	intron	16116587	16116735	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	CDS	16116736	16116791	1	-	0	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	exon	16116736	16116791	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	intron	16116792	16116928	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	CDS	16116929	16116985	1	-	0	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	exon	16116929	16116985	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	intron	16116986	16117090	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	CDS	16117091	16117232	1	-	1	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	exon	16117091	16117232	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	intron	16117233	16117318	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	CDS	16117319	16117367	1	-	2	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	exon	16117319	16117367	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	intron	16117368	16117456	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	CDS	16117457	16117550	1	-	0	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	exon	16117457	16117550	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	intron	16117551	16117644	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	CDS	16117645	16117717	1	-	1	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	exon	16117645	16117717	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	intron	16117718	16117864	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	CDS	16117865	16117965	1	-	0	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	exon	16117865	16117965	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	intron	16117966	16118133	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	CDS	16118134	16118213	1	-	2	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	exon	16118134	16118213	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	intron	16118214	16118356	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	CDS	16118357	16118768	1	-	0	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	exon	16118357	16118768	.	-	.	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
Ledus.S1	AUGUSTUS	start_codon	16118766	16118768	.	-	0	transcript_id "Ledus.S1G172200.t1"; gene_id "Ledus.S1G172200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11326.t1 is derived from g4944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3591727	3591951	.	+	.	Ledus.S4G048200
Ledus.S4	AUGUSTUS	transcript	3591727	3591951	.	+	.	transcript_id "Ledus.S4G048200.t1"; gene_id "Ledus.S4G048200"
Ledus.S4	AUGUSTUS	start_codon	3591727	3591729	.	+	0	transcript_id "Ledus.S4G048200.t1"; gene_id "Ledus.S4G048200"
Ledus.S4	AUGUSTUS	CDS	3591727	3591951	0.71	+	0	transcript_id "Ledus.S4G048200.t1"; gene_id "Ledus.S4G048200"
Ledus.S4	AUGUSTUS	exon	3591727	3591951	.	+	.	transcript_id "Ledus.S4G048200.t1"; gene_id "Ledus.S4G048200"
Ledus.S4	AUGUSTUS	stop_codon	3591952	3591954	.	+	0	transcript_id "Ledus.S4G048200.t1"; gene_id "Ledus.S4G048200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5983.t1 is derived from g3426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28159402	28161956	.	-	.	Ledus.S1G340400
Ledus.S1	AUGUSTUS	transcript	28159402	28161956	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	stop_codon	28159399	28159401	.	-	0	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	CDS	28159402	28159508	1	-	2	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	exon	28159402	28159508	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	intron	28159509	28159619	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	CDS	28159620	28159799	0.98	-	2	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	exon	28159620	28159799	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	intron	28159800	28159933	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	CDS	28159934	28160025	1	-	1	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	exon	28159934	28160025	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	intron	28160026	28160116	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	CDS	28160117	28160253	1	-	0	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	exon	28160117	28160253	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	intron	28160254	28160409	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	CDS	28160410	28160625	1	-	0	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	exon	28160410	28160625	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	intron	28160626	28160794	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	CDS	28160795	28160948	1	-	1	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	exon	28160795	28160948	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	intron	28160949	28161166	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	CDS	28161167	28161316	1	-	1	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	exon	28161167	28161316	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	intron	28161317	28161408	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	CDS	28161409	28161493	1	-	2	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	exon	28161409	28161493	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	intron	28161494	28161853	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	CDS	28161854	28161956	0.55	-	0	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	exon	28161854	28161956	.	-	.	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
Ledus.S1	AUGUSTUS	start_codon	28161954	28161956	.	-	0	transcript_id "Ledus.S1G340400.t1"; gene_id "Ledus.S1G340400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8497.t1 is derived from g13169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12217459	12217761	.	+	.	Ledus.S5G127500
Ledus.S5	AUGUSTUS	transcript	12217459	12217761	.	+	.	transcript_id "Ledus.S5G127500.t1"; gene_id "Ledus.S5G127500"
Ledus.S5	AUGUSTUS	start_codon	12217459	12217461	.	+	0	transcript_id "Ledus.S5G127500.t1"; gene_id "Ledus.S5G127500"
Ledus.S5	AUGUSTUS	CDS	12217459	12217761	0.73	+	0	transcript_id "Ledus.S5G127500.t1"; gene_id "Ledus.S5G127500"
Ledus.S5	AUGUSTUS	exon	12217459	12217761	.	+	.	transcript_id "Ledus.S5G127500.t1"; gene_id "Ledus.S5G127500"
Ledus.S5	AUGUSTUS	stop_codon	12217762	12217764	.	+	0	transcript_id "Ledus.S5G127500.t1"; gene_id "Ledus.S5G127500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12554.t1 is derived from g6176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12857669	12858070	.	-	.	Ledus.S4G171000
Ledus.S4	AUGUSTUS	transcript	12857669	12858070	.	-	.	transcript_id "Ledus.S4G171000.t1"; gene_id "Ledus.S4G171000"
Ledus.S4	AUGUSTUS	stop_codon	12857666	12857668	.	-	0	transcript_id "Ledus.S4G171000.t1"; gene_id "Ledus.S4G171000"
Ledus.S4	AUGUSTUS	CDS	12857669	12858070	0.96	-	0	transcript_id "Ledus.S4G171000.t1"; gene_id "Ledus.S4G171000"
Ledus.S4	AUGUSTUS	exon	12857669	12858070	.	-	.	transcript_id "Ledus.S4G171000.t1"; gene_id "Ledus.S4G171000"
Ledus.S4	AUGUSTUS	start_codon	12858068	12858070	.	-	0	transcript_id "Ledus.S4G171000.t1"; gene_id "Ledus.S4G171000"
# This transcript jg3824.t2 is derived from g1260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3825.t1 is derived from g1261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12765807	12767822	.	-	.	Ledus.S1G124600
Ledus.S1	AUGUSTUS	transcript	12765807	12767822	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	stop_codon	12765804	12765806	.	-	0	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	CDS	12765807	12765822	0.96	-	1	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	exon	12765807	12765822	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	intron	12765823	12766004	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	CDS	12766005	12766110	0.96	-	2	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	exon	12766005	12766110	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	intron	12766111	12766284	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	CDS	12766285	12766337	0.95	-	1	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	exon	12766285	12766337	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	intron	12766338	12766987	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	CDS	12766988	12767015	0.88	-	2	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	exon	12766988	12767015	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	intron	12767016	12767171	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	CDS	12767172	12767185	0.68	-	1	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	exon	12767172	12767185	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	intron	12767186	12767586	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	CDS	12767587	12767669	0.79	-	0	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	exon	12767587	12767669	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	intron	12767670	12767810	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	CDS	12767811	12767822	0.56	-	0	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	exon	12767811	12767822	.	-	.	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
Ledus.S1	AUGUSTUS	start_codon	12767820	12767822	.	-	0	transcript_id "Ledus.S1G124600.t1"; gene_id "Ledus.S1G124600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9250.t1 is derived from g10280.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5614260	5616068	.	+	.	Ledus.S3G072700
Ledus.S3	AUGUSTUS	transcript	5614260	5616068	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	start_codon	5614260	5614262	.	+	0	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	CDS	5614260	5614274	0.86	+	0	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	exon	5614260	5614274	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	intron	5614275	5614373	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	CDS	5614374	5614433	0.58	+	0	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	exon	5614374	5614433	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	intron	5614434	5614500	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	CDS	5614501	5614547	0.89	+	0	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	exon	5614501	5614547	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	intron	5614548	5614641	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	CDS	5614642	5614690	1	+	1	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	exon	5614642	5614690	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	intron	5614691	5614790	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	CDS	5614791	5614882	1	+	0	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	exon	5614791	5614882	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	intron	5614883	5615017	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	CDS	5615018	5615169	1	+	1	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	exon	5615018	5615169	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	intron	5615170	5615251	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	CDS	5615252	5615298	1	+	2	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	exon	5615252	5615298	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	intron	5615299	5615392	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	CDS	5615393	5615593	1	+	0	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	exon	5615393	5615593	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	intron	5615594	5615674	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	CDS	5615675	5615771	1	+	0	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	exon	5615675	5615771	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	intron	5615772	5615862	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	CDS	5615863	5616068	1	+	2	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	exon	5615863	5616068	.	+	.	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
Ledus.S3	AUGUSTUS	stop_codon	5616069	5616071	.	+	0	transcript_id "Ledus.S3G072700.t1"; gene_id "Ledus.S3G072700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8204.t1 is derived from g12875.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9836512	9839989	.	-	.	Ledus.S5G098200
Ledus.S5	AUGUSTUS	transcript	9836512	9839780	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	stop_codon	9836509	9836511	.	-	0	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9836512	9836650	0.74	-	1	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9836512	9836650	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9836651	9836747	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9836748	9837088	0.97	-	0	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9836748	9837088	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9837089	9837234	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9837235	9837465	1	-	0	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9837235	9837465	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9837466	9837587	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9837588	9837707	1	-	0	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9837588	9837707	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9837708	9837820	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9837821	9837941	1	-	1	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9837821	9837941	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9837942	9838083	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9838084	9838605	0.74	-	1	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9838084	9838605	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9838606	9838685	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9838686	9838744	0.76	-	0	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9838686	9838744	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9838745	9838955	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9838956	9839087	1	-	0	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9838956	9839087	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9839088	9839582	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9839583	9839645	0.77	-	0	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9839583	9839645	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9839646	9839741	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9839742	9839780	0.77	-	0	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9839742	9839780	.	-	.	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	start_codon	9839778	9839780	.	-	0	transcript_id "Ledus.S5G098200.t1"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	transcript	9836512	9839780	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	stop_codon	9836509	9836511	.	-	0	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9836512	9836650	0.68	-	1	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9836512	9836650	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9836651	9836747	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9836748	9837088	0.96	-	0	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9836748	9837088	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9837089	9837234	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9837235	9837465	1	-	0	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9837235	9837465	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9837466	9837587	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9837588	9837707	0.98	-	0	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9837588	9837707	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9837708	9837820	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9837821	9837941	0.99	-	1	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9837821	9837941	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9837942	9838065	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9838066	9838605	0.65	-	1	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9838066	9838605	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9838606	9838685	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9838686	9838744	0.76	-	0	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9838686	9838744	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9838745	9838955	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9838956	9839087	1	-	0	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9838956	9839087	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9839088	9839582	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9839583	9839645	0.64	-	0	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9839583	9839645	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9839646	9839741	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9839742	9839780	0.64	-	0	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9839742	9839780	.	-	.	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	start_codon	9839778	9839780	.	-	0	transcript_id "Ledus.S5G098200.t2"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	transcript	9836512	9839989	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	stop_codon	9836509	9836511	.	-	0	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9836512	9836650	0.72	-	1	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9836512	9836650	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9836651	9836747	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9836748	9837088	0.96	-	0	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9836748	9837088	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9837089	9837234	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9837235	9837465	1	-	0	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9837235	9837465	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9837466	9837587	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9837588	9837707	1	-	0	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9837588	9837707	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9837708	9837820	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9837821	9837941	1	-	1	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9837821	9837941	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9837942	9838083	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9838084	9838605	0.64	-	1	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9838084	9838605	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9838606	9838704	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9838705	9838744	0.64	-	2	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9838705	9838744	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9838745	9839582	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9839583	9839645	0.46	-	2	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9839583	9839645	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	intron	9839646	9839940	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	CDS	9839941	9839989	0.4	-	0	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	exon	9839941	9839989	.	-	.	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
Ledus.S5	AUGUSTUS	start_codon	9839987	9839989	.	-	0	transcript_id "Ledus.S5G098200.t3"; gene_id "Ledus.S5G098200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg789.t1 is derived from g7650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5118710	5123924	.	-	.	Ledus.S2G067100
Ledus.S2	AUGUSTUS	transcript	5118710	5123924	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	stop_codon	5118707	5118709	.	-	0	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5118710	5119203	0.91	-	2	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5118710	5119203	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5119204	5119274	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5119275	5119386	0.83	-	0	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5119275	5119386	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5119387	5119477	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5119478	5119735	0.79	-	0	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5119478	5119735	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5119736	5119818	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5119819	5120232	0.99	-	0	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5119819	5120232	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5120233	5120314	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5120315	5120531	0.52	-	1	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5120315	5120531	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5120532	5120715	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5120716	5120927	0.31	-	0	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5120716	5120927	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5120928	5121173	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5121174	5121285	0.56	-	1	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5121174	5121285	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5121286	5121504	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5121505	5121593	1	-	0	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5121505	5121593	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5121594	5121684	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5121685	5122287	1	-	0	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5121685	5122287	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5122288	5122375	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5122376	5122639	0.99	-	0	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5122376	5122639	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5122640	5122783	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5122784	5122942	1	-	0	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5122784	5122942	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5122943	5123027	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5123028	5123116	1	-	2	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5123028	5123116	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5123117	5123255	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5123256	5123330	0.59	-	2	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5123256	5123330	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	intron	5123331	5123713	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	CDS	5123714	5123924	0.37	-	0	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	exon	5123714	5123924	.	-	.	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
Ledus.S2	AUGUSTUS	start_codon	5123922	5123924	.	-	0	transcript_id "Ledus.S2G067100.t1"; gene_id "Ledus.S2G067100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8082.t1 is derived from g12753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9079196	9082241	.	+	.	Ledus.S5G086000
Ledus.S5	AUGUSTUS	transcript	9079196	9082241	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	start_codon	9079196	9079198	.	+	0	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	CDS	9079196	9079293	0.23	+	0	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	exon	9079196	9079293	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	intron	9079294	9079527	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	CDS	9079528	9079579	0.94	+	1	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	exon	9079528	9079579	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	intron	9079580	9079685	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	CDS	9079686	9080539	1	+	0	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	exon	9079686	9080539	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	intron	9080540	9080670	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	CDS	9080671	9081109	0.95	+	1	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	exon	9080671	9081109	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	intron	9081110	9081199	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	CDS	9081200	9081349	1	+	0	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	exon	9081200	9081349	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	intron	9081350	9081442	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	CDS	9081443	9082039	1	+	0	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	exon	9081443	9082039	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	intron	9082040	9082121	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	CDS	9082122	9082241	0.99	+	0	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	exon	9082122	9082241	.	+	.	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
Ledus.S5	AUGUSTUS	stop_codon	9082242	9082244	.	+	0	transcript_id "Ledus.S5G086000.t1"; gene_id "Ledus.S5G086000"
# This transcript jg5583.t2 is derived from g3022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5584.t1 is derived from g3023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25262432	25263772	.	-	.	Ledus.S1G300500
Ledus.S1	AUGUSTUS	transcript	25262432	25263772	.	-	.	transcript_id "Ledus.S1G300500.t1"; gene_id "Ledus.S1G300500"
Ledus.S1	AUGUSTUS	stop_codon	25262429	25262431	.	-	0	transcript_id "Ledus.S1G300500.t1"; gene_id "Ledus.S1G300500"
Ledus.S1	AUGUSTUS	CDS	25262432	25262471	0.92	-	1	transcript_id "Ledus.S1G300500.t1"; gene_id "Ledus.S1G300500"
Ledus.S1	AUGUSTUS	exon	25262432	25262471	.	-	.	transcript_id "Ledus.S1G300500.t1"; gene_id "Ledus.S1G300500"
Ledus.S1	AUGUSTUS	intron	25262472	25262606	.	-	.	transcript_id "Ledus.S1G300500.t1"; gene_id "Ledus.S1G300500"
Ledus.S1	AUGUSTUS	CDS	25262607	25263772	0.94	-	0	transcript_id "Ledus.S1G300500.t1"; gene_id "Ledus.S1G300500"
Ledus.S1	AUGUSTUS	exon	25262607	25263772	.	-	.	transcript_id "Ledus.S1G300500.t1"; gene_id "Ledus.S1G300500"
Ledus.S1	AUGUSTUS	start_codon	25263770	25263772	.	-	0	transcript_id "Ledus.S1G300500.t1"; gene_id "Ledus.S1G300500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6356.t1 is derived from g3799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30726909	30727826	.	-	.	Ledus.S1G377700
Ledus.S1	AUGUSTUS	transcript	30726909	30727826	.	-	.	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	stop_codon	30726906	30726908	.	-	0	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	CDS	30726909	30727067	0.93	-	0	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	exon	30726909	30727067	.	-	.	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	intron	30727068	30727161	.	-	.	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	CDS	30727162	30727264	1	-	1	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	exon	30727162	30727264	.	-	.	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	intron	30727265	30727345	.	-	.	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	CDS	30727346	30727449	1	-	0	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	exon	30727346	30727449	.	-	.	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	intron	30727450	30727547	.	-	.	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	CDS	30727548	30727619	1	-	0	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	exon	30727548	30727619	.	-	.	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	intron	30727620	30727775	.	-	.	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	CDS	30727776	30727826	0.41	-	0	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	exon	30727776	30727826	.	-	.	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
Ledus.S1	AUGUSTUS	start_codon	30727824	30727826	.	-	0	transcript_id "Ledus.S1G377700.t1"; gene_id "Ledus.S1G377700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10218.t1 is derived from g11248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13641014	13641424	.	-	.	Ledus.S3G169500
Ledus.S3	AUGUSTUS	transcript	13641014	13641424	.	-	.	transcript_id "Ledus.S3G169500.t1"; gene_id "Ledus.S3G169500"
Ledus.S3	AUGUSTUS	stop_codon	13641011	13641013	.	-	0	transcript_id "Ledus.S3G169500.t1"; gene_id "Ledus.S3G169500"
Ledus.S3	AUGUSTUS	CDS	13641014	13641424	0.76	-	0	transcript_id "Ledus.S3G169500.t1"; gene_id "Ledus.S3G169500"
Ledus.S3	AUGUSTUS	exon	13641014	13641424	.	-	.	transcript_id "Ledus.S3G169500.t1"; gene_id "Ledus.S3G169500"
Ledus.S3	AUGUSTUS	start_codon	13641422	13641424	.	-	0	transcript_id "Ledus.S3G169500.t1"; gene_id "Ledus.S3G169500"
# This transcript jg10397.t2 is derived from g11427.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10398.t1 is derived from g11428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14798317	14799651	.	+	.	Ledus.S3G187500
Ledus.S3	AUGUSTUS	transcript	14798317	14799651	.	+	.	transcript_id "Ledus.S3G187500.t1"; gene_id "Ledus.S3G187500"
Ledus.S3	AUGUSTUS	start_codon	14798317	14798319	.	+	0	transcript_id "Ledus.S3G187500.t1"; gene_id "Ledus.S3G187500"
Ledus.S3	AUGUSTUS	CDS	14798317	14799651	1	+	0	transcript_id "Ledus.S3G187500.t1"; gene_id "Ledus.S3G187500"
Ledus.S3	AUGUSTUS	exon	14798317	14799651	.	+	.	transcript_id "Ledus.S3G187500.t1"; gene_id "Ledus.S3G187500"
Ledus.S3	AUGUSTUS	stop_codon	14799652	14799654	.	+	0	transcript_id "Ledus.S3G187500.t1"; gene_id "Ledus.S3G187500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4172.t1 is derived from g1608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15158757	15158993	.	-	.	Ledus.S1G159300
Ledus.S1	AUGUSTUS	transcript	15158757	15158993	.	-	.	transcript_id "Ledus.S1G159300.t1"; gene_id "Ledus.S1G159300"
Ledus.S1	AUGUSTUS	stop_codon	15158754	15158756	.	-	0	transcript_id "Ledus.S1G159300.t1"; gene_id "Ledus.S1G159300"
Ledus.S1	AUGUSTUS	CDS	15158757	15158993	0.87	-	0	transcript_id "Ledus.S1G159300.t1"; gene_id "Ledus.S1G159300"
Ledus.S1	AUGUSTUS	exon	15158757	15158993	.	-	.	transcript_id "Ledus.S1G159300.t1"; gene_id "Ledus.S1G159300"
Ledus.S1	AUGUSTUS	start_codon	15158991	15158993	.	-	0	transcript_id "Ledus.S1G159300.t1"; gene_id "Ledus.S1G159300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2976.t1 is derived from g411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5031315	5033447	.	-	.	Ledus.S1G039700
Ledus.S1	AUGUSTUS	transcript	5031315	5033447	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	stop_codon	5031312	5031314	.	-	0	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	CDS	5031315	5031468	0.53	-	1	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	exon	5031315	5031468	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	intron	5031469	5031567	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	CDS	5031568	5031747	1	-	1	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	exon	5031568	5031747	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	intron	5031748	5031840	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	CDS	5031841	5032037	1	-	0	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	exon	5031841	5032037	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	intron	5032038	5032133	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	CDS	5032134	5032247	1	-	0	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	exon	5032134	5032247	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	intron	5032248	5032339	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	CDS	5032340	5032476	1	-	2	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	exon	5032340	5032476	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	intron	5032477	5032547	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	CDS	5032548	5032658	1	-	2	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	exon	5032548	5032658	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	intron	5032659	5032750	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	CDS	5032751	5033003	1	-	0	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	exon	5032751	5033003	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	intron	5033004	5033077	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	CDS	5033078	5033176	1	-	0	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	exon	5033078	5033176	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	intron	5033177	5033252	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	CDS	5033253	5033447	0.37	-	0	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	exon	5033253	5033447	.	-	.	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
Ledus.S1	AUGUSTUS	start_codon	5033445	5033447	.	-	0	transcript_id "Ledus.S1G039700.t1"; gene_id "Ledus.S1G039700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9441.t1 is derived from g10471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6764119	6764611	.	+	.	Ledus.S3G091800
Ledus.S3	AUGUSTUS	transcript	6764119	6764611	.	+	.	transcript_id "Ledus.S3G091800.t1"; gene_id "Ledus.S3G091800"
Ledus.S3	AUGUSTUS	start_codon	6764119	6764121	.	+	0	transcript_id "Ledus.S3G091800.t1"; gene_id "Ledus.S3G091800"
Ledus.S3	AUGUSTUS	CDS	6764119	6764453	0.94	+	0	transcript_id "Ledus.S3G091800.t1"; gene_id "Ledus.S3G091800"
Ledus.S3	AUGUSTUS	exon	6764119	6764453	.	+	.	transcript_id "Ledus.S3G091800.t1"; gene_id "Ledus.S3G091800"
Ledus.S3	AUGUSTUS	intron	6764454	6764595	.	+	.	transcript_id "Ledus.S3G091800.t1"; gene_id "Ledus.S3G091800"
Ledus.S3	AUGUSTUS	CDS	6764596	6764611	0.96	+	1	transcript_id "Ledus.S3G091800.t1"; gene_id "Ledus.S3G091800"
Ledus.S3	AUGUSTUS	exon	6764596	6764611	.	+	.	transcript_id "Ledus.S3G091800.t1"; gene_id "Ledus.S3G091800"
Ledus.S3	AUGUSTUS	stop_codon	6764612	6764614	.	+	0	transcript_id "Ledus.S3G091800.t1"; gene_id "Ledus.S3G091800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5296.t1 is derived from g2735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22914051	22914743	.	+	.	Ledus.S1G271700
Ledus.S1	AUGUSTUS	transcript	22914051	22914743	.	+	.	transcript_id "Ledus.S1G271700.t1"; gene_id "Ledus.S1G271700"
Ledus.S1	AUGUSTUS	start_codon	22914051	22914053	.	+	0	transcript_id "Ledus.S1G271700.t1"; gene_id "Ledus.S1G271700"
Ledus.S1	AUGUSTUS	CDS	22914051	22914743	0.35	+	0	transcript_id "Ledus.S1G271700.t1"; gene_id "Ledus.S1G271700"
Ledus.S1	AUGUSTUS	exon	22914051	22914743	.	+	.	transcript_id "Ledus.S1G271700.t1"; gene_id "Ledus.S1G271700"
Ledus.S1	AUGUSTUS	stop_codon	22914744	22914746	.	+	0	transcript_id "Ledus.S1G271700.t1"; gene_id "Ledus.S1G271700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1451.t1 is derived from g8312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10268605	10272560	.	+	.	Ledus.S2G133300
Ledus.S2	AUGUSTUS	transcript	10268605	10272560	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	start_codon	10268605	10268607	.	+	0	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10268605	10268789	1	+	0	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10268605	10268789	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10268790	10268896	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10268897	10268989	1	+	1	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10268897	10268989	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10268990	10269128	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10269129	10269282	1	+	1	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10269129	10269282	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10269283	10269351	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10269352	10269535	1	+	0	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10269352	10269535	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10269536	10269766	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10269767	10269836	1	+	2	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10269767	10269836	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10269837	10270060	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10270061	10270134	1	+	1	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10270061	10270134	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10270135	10270230	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10270231	10270298	1	+	2	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10270231	10270298	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10270299	10270454	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10270455	10270546	1	+	0	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10270455	10270546	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10270547	10270777	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10270778	10270922	0.98	+	1	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10270778	10270922	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10270923	10271028	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10271029	10271154	0.97	+	0	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10271029	10271154	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10271155	10271282	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10271283	10271354	1	+	0	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10271283	10271354	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10271355	10272137	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10272138	10272248	1	+	0	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10272138	10272248	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10272249	10272326	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10272327	10272368	0.97	+	0	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10272327	10272368	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10272369	10272432	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10272433	10272448	0.96	+	0	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10272433	10272448	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	intron	10272449	10272531	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	CDS	10272532	10272560	0.96	+	2	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	exon	10272532	10272560	.	+	.	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
Ledus.S2	AUGUSTUS	stop_codon	10272561	10272563	.	+	0	transcript_id "Ledus.S2G133300.t1"; gene_id "Ledus.S2G133300"
# This transcript jg4643.t2 is derived from g2080.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4643.t3 is derived from g2080.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4643.t4 is derived from g2080.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4644.t1 is derived from g2082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18601597	18602974	.	-	.	Ledus.S1G206500
Ledus.S1	AUGUSTUS	transcript	18601597	18602974	.	-	.	transcript_id "Ledus.S1G206500.t1"; gene_id "Ledus.S1G206500"
Ledus.S1	AUGUSTUS	stop_codon	18601594	18601596	.	-	0	transcript_id "Ledus.S1G206500.t1"; gene_id "Ledus.S1G206500"
Ledus.S1	AUGUSTUS	CDS	18601597	18601842	1	-	0	transcript_id "Ledus.S1G206500.t1"; gene_id "Ledus.S1G206500"
Ledus.S1	AUGUSTUS	exon	18601597	18601842	.	-	.	transcript_id "Ledus.S1G206500.t1"; gene_id "Ledus.S1G206500"
Ledus.S1	AUGUSTUS	intron	18601843	18601933	.	-	.	transcript_id "Ledus.S1G206500.t1"; gene_id "Ledus.S1G206500"
Ledus.S1	AUGUSTUS	CDS	18601934	18602200	1	-	0	transcript_id "Ledus.S1G206500.t1"; gene_id "Ledus.S1G206500"
Ledus.S1	AUGUSTUS	exon	18601934	18602200	.	-	.	transcript_id "Ledus.S1G206500.t1"; gene_id "Ledus.S1G206500"
Ledus.S1	AUGUSTUS	intron	18602201	18602395	.	-	.	transcript_id "Ledus.S1G206500.t1"; gene_id "Ledus.S1G206500"
Ledus.S1	AUGUSTUS	CDS	18602396	18602974	1	-	0	transcript_id "Ledus.S1G206500.t1"; gene_id "Ledus.S1G206500"
Ledus.S1	AUGUSTUS	exon	18602396	18602974	.	-	.	transcript_id "Ledus.S1G206500.t1"; gene_id "Ledus.S1G206500"
Ledus.S1	AUGUSTUS	start_codon	18602972	18602974	.	-	0	transcript_id "Ledus.S1G206500.t1"; gene_id "Ledus.S1G206500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9235.t1 is derived from g10265.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5540361	5543771	.	-	.	Ledus.S3G071200
Ledus.S3	AUGUSTUS	transcript	5540361	5543771	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	stop_codon	5540358	5540360	.	-	0	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5540361	5540450	0.97	-	0	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5540361	5540450	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5540451	5540549	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5540550	5540627	1	-	0	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5540550	5540627	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5540628	5540708	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5540709	5540762	1	-	0	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5540709	5540762	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5540763	5540876	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5540877	5540940	1	-	1	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5540877	5540940	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5540941	5541032	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5541033	5541078	1	-	2	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5541033	5541078	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5541079	5541200	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5541201	5541273	1	-	0	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5541201	5541273	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5541274	5541397	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5541398	5541469	1	-	0	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5541398	5541469	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5541470	5541649	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5541650	5541742	1	-	0	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5541650	5541742	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5541743	5541930	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5541931	5541983	1	-	2	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5541931	5541983	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5541984	5542096	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5542097	5542187	0.89	-	0	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5542097	5542187	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5542188	5542293	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5542294	5542469	0.81	-	2	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5542294	5542469	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5542470	5542547	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5542548	5542596	0.97	-	0	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5542548	5542596	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5542597	5542726	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5542727	5542789	0.71	-	0	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5542727	5542789	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5542790	5543238	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5543239	5543285	0.44	-	2	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5543239	5543285	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5543286	5543381	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5543382	5543452	0.73	-	1	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5543382	5543452	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	intron	5543453	5543535	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	CDS	5543536	5543771	0.51	-	0	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	exon	5543536	5543771	.	-	.	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
Ledus.S3	AUGUSTUS	start_codon	5543769	5543771	.	-	0	transcript_id "Ledus.S3G071200.t1"; gene_id "Ledus.S3G071200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9520.t1 is derived from g10550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7557051	7563597	.	+	.	Ledus.S3G099700
Ledus.S3	AUGUSTUS	transcript	7557051	7563597	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	start_codon	7557051	7557053	.	+	0	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7557051	7557186	0.68	+	0	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7557051	7557186	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7557187	7557430	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7557431	7557512	0.99	+	2	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7557431	7557512	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7557513	7557639	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7557640	7557898	0.9	+	1	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7557640	7557898	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7557899	7557977	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7557978	7558135	1	+	0	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7557978	7558135	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7558136	7558291	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7558292	7559510	1	+	1	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7558292	7559510	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7559511	7559658	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7559659	7559850	0.98	+	0	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7559659	7559850	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7559851	7559964	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7559965	7560645	1	+	0	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7559965	7560645	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7560646	7560730	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7560731	7560907	1	+	0	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7560731	7560907	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7560908	7560997	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7560998	7561065	1	+	0	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7560998	7561065	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7561066	7561240	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7561241	7561463	0.49	+	1	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7561241	7561463	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7561464	7561588	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7561589	7561688	1	+	0	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7561589	7561688	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7561689	7561772	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7561773	7561891	1	+	2	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7561773	7561891	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7561892	7562028	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7562029	7562086	1	+	0	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7562029	7562086	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7562087	7562193	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7562194	7562345	1	+	2	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7562194	7562345	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7562346	7562458	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7562459	7562603	0.98	+	0	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7562459	7562603	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7562604	7562713	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7562714	7563491	0.99	+	2	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7562714	7563491	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	intron	7563492	7563563	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	CDS	7563564	7563597	1	+	1	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	exon	7563564	7563597	.	+	.	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
Ledus.S3	AUGUSTUS	stop_codon	7563598	7563600	.	+	0	transcript_id "Ledus.S3G099700.t1"; gene_id "Ledus.S3G099700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg346.t1 is derived from g7207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1839505	1841339	.	-	.	Ledus.S2G022800
Ledus.S2	AUGUSTUS	transcript	1839505	1841339	.	-	.	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	stop_codon	1839502	1839504	.	-	0	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	CDS	1839505	1839780	1	-	0	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	exon	1839505	1839780	.	-	.	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	intron	1839781	1839909	.	-	.	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	CDS	1839910	1840594	0.91	-	1	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	exon	1839910	1840594	.	-	.	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	intron	1840595	1840681	.	-	.	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	CDS	1840682	1841020	0.93	-	1	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	exon	1840682	1841020	.	-	.	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	intron	1841021	1841280	.	-	.	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	CDS	1841281	1841339	0.38	-	0	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	exon	1841281	1841339	.	-	.	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
Ledus.S2	AUGUSTUS	start_codon	1841337	1841339	.	-	0	transcript_id "Ledus.S2G022800.t1"; gene_id "Ledus.S2G022800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5712.t1 is derived from g3151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26126578	26126919	.	-	.	Ledus.S1G313300
Ledus.S1	AUGUSTUS	transcript	26126578	26126919	.	-	.	transcript_id "Ledus.S1G313300.t1"; gene_id "Ledus.S1G313300"
Ledus.S1	AUGUSTUS	stop_codon	26126575	26126577	.	-	0	transcript_id "Ledus.S1G313300.t1"; gene_id "Ledus.S1G313300"
Ledus.S1	AUGUSTUS	CDS	26126578	26126804	0.74	-	2	transcript_id "Ledus.S1G313300.t1"; gene_id "Ledus.S1G313300"
Ledus.S1	AUGUSTUS	exon	26126578	26126804	.	-	.	transcript_id "Ledus.S1G313300.t1"; gene_id "Ledus.S1G313300"
Ledus.S1	AUGUSTUS	intron	26126805	26126909	.	-	.	transcript_id "Ledus.S1G313300.t1"; gene_id "Ledus.S1G313300"
Ledus.S1	AUGUSTUS	CDS	26126910	26126919	0.69	-	0	transcript_id "Ledus.S1G313300.t1"; gene_id "Ledus.S1G313300"
Ledus.S1	AUGUSTUS	exon	26126910	26126919	.	-	.	transcript_id "Ledus.S1G313300.t1"; gene_id "Ledus.S1G313300"
Ledus.S1	AUGUSTUS	start_codon	26126917	26126919	.	-	0	transcript_id "Ledus.S1G313300.t1"; gene_id "Ledus.S1G313300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4204.t1 is derived from g1640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15361622	15363036	.	-	.	Ledus.S1G162500
Ledus.S1	AUGUSTUS	transcript	15361622	15363036	.	-	.	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	stop_codon	15361619	15361621	.	-	0	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	CDS	15361622	15361622	1	-	1	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	exon	15361622	15361622	.	-	.	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	intron	15361623	15361893	.	-	.	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	CDS	15361894	15362075	1	-	0	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	exon	15361894	15362075	.	-	.	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	intron	15362076	15362207	.	-	.	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	CDS	15362208	15362263	1	-	2	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	exon	15362208	15362263	.	-	.	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	intron	15362264	15362385	.	-	.	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	CDS	15362386	15362467	0.94	-	0	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	exon	15362386	15362467	.	-	.	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	intron	15362468	15362578	.	-	.	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	CDS	15362579	15362660	0.6	-	1	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	exon	15362579	15362660	.	-	.	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	intron	15362661	15362851	.	-	.	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	CDS	15362852	15363036	0.35	-	0	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	exon	15362852	15363036	.	-	.	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
Ledus.S1	AUGUSTUS	start_codon	15363034	15363036	.	-	0	transcript_id "Ledus.S1G162500.t1"; gene_id "Ledus.S1G162500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9817.t1 is derived from g10847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10099040	10099666	.	-	.	Ledus.S3G129400
Ledus.S3	AUGUSTUS	transcript	10099040	10099666	.	-	.	transcript_id "Ledus.S3G129400.t1"; gene_id "Ledus.S3G129400"
Ledus.S3	AUGUSTUS	stop_codon	10099037	10099039	.	-	0	transcript_id "Ledus.S3G129400.t1"; gene_id "Ledus.S3G129400"
Ledus.S3	AUGUSTUS	CDS	10099040	10099666	0.8	-	0	transcript_id "Ledus.S3G129400.t1"; gene_id "Ledus.S3G129400"
Ledus.S3	AUGUSTUS	exon	10099040	10099666	.	-	.	transcript_id "Ledus.S3G129400.t1"; gene_id "Ledus.S3G129400"
Ledus.S3	AUGUSTUS	start_codon	10099664	10099666	.	-	0	transcript_id "Ledus.S3G129400.t1"; gene_id "Ledus.S3G129400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3430.t1 is derived from g865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8292873	8296473	.	+	.	Ledus.S1G085100
Ledus.S1	AUGUSTUS	transcript	8292873	8296473	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	start_codon	8292873	8292875	.	+	0	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8292873	8293072	0.98	+	0	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8292873	8293072	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	intron	8293073	8293248	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8293249	8293334	1	+	1	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8293249	8293334	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	intron	8293335	8293528	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8293529	8293617	1	+	2	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8293529	8293617	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	intron	8293618	8293739	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8293740	8293979	0.99	+	0	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8293740	8293979	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	intron	8293980	8294183	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8294184	8294305	1	+	0	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8294184	8294305	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	intron	8294306	8294489	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8294490	8294565	1	+	1	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8294490	8294565	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	intron	8294566	8294695	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8294696	8294803	1	+	0	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8294696	8294803	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	intron	8294804	8294931	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8294932	8295108	1	+	0	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8294932	8295108	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	intron	8295109	8295241	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8295242	8295462	1	+	0	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8295242	8295462	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	intron	8295463	8295579	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8295580	8295712	1	+	1	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8295580	8295712	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	intron	8295713	8295822	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8295823	8296046	1	+	0	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8295823	8296046	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	intron	8296047	8296150	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8296151	8296304	1	+	1	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8296151	8296304	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	intron	8296305	8296392	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	CDS	8296393	8296473	1	+	0	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	exon	8296393	8296473	.	+	.	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
Ledus.S1	AUGUSTUS	stop_codon	8296474	8296476	.	+	0	transcript_id "Ledus.S1G085100.t1"; gene_id "Ledus.S1G085100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6897.t1 is derived from g4341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35056074	35056470	.	-	.	Ledus.S1G431800
Ledus.S1	AUGUSTUS	transcript	35056074	35056470	.	-	.	transcript_id "Ledus.S1G431800.t1"; gene_id "Ledus.S1G431800"
Ledus.S1	AUGUSTUS	stop_codon	35056071	35056073	.	-	0	transcript_id "Ledus.S1G431800.t1"; gene_id "Ledus.S1G431800"
Ledus.S1	AUGUSTUS	CDS	35056074	35056081	1	-	2	transcript_id "Ledus.S1G431800.t1"; gene_id "Ledus.S1G431800"
Ledus.S1	AUGUSTUS	exon	35056074	35056081	.	-	.	transcript_id "Ledus.S1G431800.t1"; gene_id "Ledus.S1G431800"
Ledus.S1	AUGUSTUS	intron	35056082	35056169	.	-	.	transcript_id "Ledus.S1G431800.t1"; gene_id "Ledus.S1G431800"
Ledus.S1	AUGUSTUS	CDS	35056170	35056470	0.93	-	0	transcript_id "Ledus.S1G431800.t1"; gene_id "Ledus.S1G431800"
Ledus.S1	AUGUSTUS	exon	35056170	35056470	.	-	.	transcript_id "Ledus.S1G431800.t1"; gene_id "Ledus.S1G431800"
Ledus.S1	AUGUSTUS	start_codon	35056468	35056470	.	-	0	transcript_id "Ledus.S1G431800.t1"; gene_id "Ledus.S1G431800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3883.t1 is derived from g1319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13372083	13373245	.	+	.	Ledus.S1G130400
Ledus.S1	AUGUSTUS	transcript	13372083	13373245	.	+	.	transcript_id "Ledus.S1G130400.t1"; gene_id "Ledus.S1G130400"
Ledus.S1	AUGUSTUS	start_codon	13372083	13372085	.	+	0	transcript_id "Ledus.S1G130400.t1"; gene_id "Ledus.S1G130400"
Ledus.S1	AUGUSTUS	CDS	13372083	13372293	0.87	+	0	transcript_id "Ledus.S1G130400.t1"; gene_id "Ledus.S1G130400"
Ledus.S1	AUGUSTUS	exon	13372083	13372293	.	+	.	transcript_id "Ledus.S1G130400.t1"; gene_id "Ledus.S1G130400"
Ledus.S1	AUGUSTUS	intron	13372294	13372774	.	+	.	transcript_id "Ledus.S1G130400.t1"; gene_id "Ledus.S1G130400"
Ledus.S1	AUGUSTUS	CDS	13372775	13372881	0.9	+	2	transcript_id "Ledus.S1G130400.t1"; gene_id "Ledus.S1G130400"
Ledus.S1	AUGUSTUS	exon	13372775	13372881	.	+	.	transcript_id "Ledus.S1G130400.t1"; gene_id "Ledus.S1G130400"
Ledus.S1	AUGUSTUS	intron	13372882	13373188	.	+	.	transcript_id "Ledus.S1G130400.t1"; gene_id "Ledus.S1G130400"
Ledus.S1	AUGUSTUS	CDS	13373189	13373245	1	+	0	transcript_id "Ledus.S1G130400.t1"; gene_id "Ledus.S1G130400"
Ledus.S1	AUGUSTUS	exon	13373189	13373245	.	+	.	transcript_id "Ledus.S1G130400.t1"; gene_id "Ledus.S1G130400"
Ledus.S1	AUGUSTUS	stop_codon	13373246	13373248	.	+	0	transcript_id "Ledus.S1G130400.t1"; gene_id "Ledus.S1G130400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9714.t1 is derived from g10744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9242268	9244692	.	+	.	Ledus.S3G119100
Ledus.S3	AUGUSTUS	transcript	9242268	9244692	.	+	.	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	start_codon	9242268	9242270	.	+	0	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	CDS	9242268	9242352	0.89	+	0	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	exon	9242268	9242352	.	+	.	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	intron	9242353	9242473	.	+	.	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	CDS	9242474	9243040	0.89	+	2	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	exon	9242474	9243040	.	+	.	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	intron	9243041	9243126	.	+	.	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	CDS	9243127	9243172	0.38	+	2	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	exon	9243127	9243172	.	+	.	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	intron	9243173	9243267	.	+	.	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	CDS	9243268	9243811	0.29	+	1	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	exon	9243268	9243811	.	+	.	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	intron	9243812	9243978	.	+	.	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	CDS	9243979	9244166	0.98	+	0	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	exon	9243979	9244166	.	+	.	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	intron	9244167	9244253	.	+	.	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	CDS	9244254	9244692	1	+	1	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	exon	9244254	9244692	.	+	.	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
Ledus.S3	AUGUSTUS	stop_codon	9244693	9244695	.	+	0	transcript_id "Ledus.S3G119100.t1"; gene_id "Ledus.S3G119100"
# This transcript jg10424.t2 is derived from g11454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10425.t1 is derived from g11455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15069035	15069754	.	+	.	Ledus.S3G190200
Ledus.S3	AUGUSTUS	transcript	15069035	15069754	.	+	.	transcript_id "Ledus.S3G190200.t1"; gene_id "Ledus.S3G190200"
Ledus.S3	AUGUSTUS	start_codon	15069035	15069037	.	+	0	transcript_id "Ledus.S3G190200.t1"; gene_id "Ledus.S3G190200"
Ledus.S3	AUGUSTUS	CDS	15069035	15069754	0.46	+	0	transcript_id "Ledus.S3G190200.t1"; gene_id "Ledus.S3G190200"
Ledus.S3	AUGUSTUS	exon	15069035	15069754	.	+	.	transcript_id "Ledus.S3G190200.t1"; gene_id "Ledus.S3G190200"
Ledus.S3	AUGUSTUS	stop_codon	15069755	15069757	.	+	0	transcript_id "Ledus.S3G190200.t1"; gene_id "Ledus.S3G190200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg507.t1 is derived from g7368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2975036	2976585	.	+	.	Ledus.S2G038900
Ledus.S2	AUGUSTUS	transcript	2975036	2976585	.	+	.	transcript_id "Ledus.S2G038900.t1"; gene_id "Ledus.S2G038900"
Ledus.S2	AUGUSTUS	start_codon	2975036	2975038	.	+	0	transcript_id "Ledus.S2G038900.t1"; gene_id "Ledus.S2G038900"
Ledus.S2	AUGUSTUS	CDS	2975036	2975368	1	+	0	transcript_id "Ledus.S2G038900.t1"; gene_id "Ledus.S2G038900"
Ledus.S2	AUGUSTUS	exon	2975036	2975368	.	+	.	transcript_id "Ledus.S2G038900.t1"; gene_id "Ledus.S2G038900"
Ledus.S2	AUGUSTUS	intron	2975369	2975761	.	+	.	transcript_id "Ledus.S2G038900.t1"; gene_id "Ledus.S2G038900"
Ledus.S2	AUGUSTUS	CDS	2975762	2976005	1	+	0	transcript_id "Ledus.S2G038900.t1"; gene_id "Ledus.S2G038900"
Ledus.S2	AUGUSTUS	exon	2975762	2976005	.	+	.	transcript_id "Ledus.S2G038900.t1"; gene_id "Ledus.S2G038900"
Ledus.S2	AUGUSTUS	intron	2976006	2976178	.	+	.	transcript_id "Ledus.S2G038900.t1"; gene_id "Ledus.S2G038900"
Ledus.S2	AUGUSTUS	CDS	2976179	2976585	0.95	+	2	transcript_id "Ledus.S2G038900.t1"; gene_id "Ledus.S2G038900"
Ledus.S2	AUGUSTUS	exon	2976179	2976585	.	+	.	transcript_id "Ledus.S2G038900.t1"; gene_id "Ledus.S2G038900"
Ledus.S2	AUGUSTUS	stop_codon	2976586	2976588	.	+	0	transcript_id "Ledus.S2G038900.t1"; gene_id "Ledus.S2G038900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12615.t1 is derived from g6237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13237549	13240128	.	+	.	Ledus.S4G177100
Ledus.S4	AUGUSTUS	transcript	13237549	13240128	.	+	.	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	start_codon	13237549	13237551	.	+	0	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	CDS	13237549	13237885	1	+	0	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	exon	13237549	13237885	.	+	.	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	intron	13237886	13237999	.	+	.	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	CDS	13238000	13238166	0.97	+	2	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	exon	13238000	13238166	.	+	.	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	intron	13238167	13238279	.	+	.	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	CDS	13238280	13238567	1	+	0	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	exon	13238280	13238567	.	+	.	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	intron	13238568	13238661	.	+	.	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	CDS	13238662	13238943	0.98	+	0	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	exon	13238662	13238943	.	+	.	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	intron	13238944	13239047	.	+	.	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	CDS	13239048	13239481	0.78	+	0	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	exon	13239048	13239481	.	+	.	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	intron	13239482	13239854	.	+	.	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	CDS	13239855	13240128	0.26	+	1	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	exon	13239855	13240128	.	+	.	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
Ledus.S4	AUGUSTUS	stop_codon	13240129	13240131	.	+	0	transcript_id "Ledus.S4G177100.t1"; gene_id "Ledus.S4G177100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11262.t1 is derived from g4880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3047701	3049773	.	+	.	Ledus.S4G041800
Ledus.S4	AUGUSTUS	transcript	3047701	3049773	.	+	.	transcript_id "Ledus.S4G041800.t1"; gene_id "Ledus.S4G041800"
Ledus.S4	AUGUSTUS	start_codon	3047701	3047703	.	+	0	transcript_id "Ledus.S4G041800.t1"; gene_id "Ledus.S4G041800"
Ledus.S4	AUGUSTUS	CDS	3047701	3048082	0.5	+	0	transcript_id "Ledus.S4G041800.t1"; gene_id "Ledus.S4G041800"
Ledus.S4	AUGUSTUS	exon	3047701	3048082	.	+	.	transcript_id "Ledus.S4G041800.t1"; gene_id "Ledus.S4G041800"
Ledus.S4	AUGUSTUS	intron	3048083	3048532	.	+	.	transcript_id "Ledus.S4G041800.t1"; gene_id "Ledus.S4G041800"
Ledus.S4	AUGUSTUS	CDS	3048533	3049031	0.58	+	2	transcript_id "Ledus.S4G041800.t1"; gene_id "Ledus.S4G041800"
Ledus.S4	AUGUSTUS	exon	3048533	3049031	.	+	.	transcript_id "Ledus.S4G041800.t1"; gene_id "Ledus.S4G041800"
Ledus.S4	AUGUSTUS	intron	3049032	3049565	.	+	.	transcript_id "Ledus.S4G041800.t1"; gene_id "Ledus.S4G041800"
Ledus.S4	AUGUSTUS	CDS	3049566	3049773	0.82	+	1	transcript_id "Ledus.S4G041800.t1"; gene_id "Ledus.S4G041800"
Ledus.S4	AUGUSTUS	exon	3049566	3049773	.	+	.	transcript_id "Ledus.S4G041800.t1"; gene_id "Ledus.S4G041800"
Ledus.S4	AUGUSTUS	stop_codon	3049774	3049776	.	+	0	transcript_id "Ledus.S4G041800.t1"; gene_id "Ledus.S4G041800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12394.t1 is derived from g6015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11645481	11649080	.	+	.	Ledus.S4G155000
Ledus.S4	AUGUSTUS	transcript	11645481	11649080	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	start_codon	11645481	11645483	.	+	0	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	CDS	11645481	11645601	0.98	+	0	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	exon	11645481	11645601	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	intron	11645602	11645679	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	CDS	11645680	11645759	1	+	2	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	exon	11645680	11645759	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	intron	11645760	11645827	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	CDS	11645828	11645945	1	+	0	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	exon	11645828	11645945	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	intron	11645946	11646023	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	CDS	11646024	11646103	1	+	2	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	exon	11646024	11646103	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	intron	11646104	11646197	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	CDS	11646198	11646321	1	+	0	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	exon	11646198	11646321	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	intron	11646322	11646405	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	CDS	11646406	11648493	0.42	+	2	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	exon	11646406	11648493	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	intron	11648494	11648579	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	CDS	11648580	11648761	0.26	+	2	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	exon	11648580	11648761	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	intron	11648762	11649002	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	CDS	11649003	11649080	1	+	0	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	exon	11649003	11649080	.	+	.	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
Ledus.S4	AUGUSTUS	stop_codon	11649081	11649083	.	+	0	transcript_id "Ledus.S4G155000.t1"; gene_id "Ledus.S4G155000"
# This transcript jg12083.t2 is derived from g5702.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12084.t1 is derived from g5703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9441380	9442547	.	+	.	Ledus.S4G124000
Ledus.S4	AUGUSTUS	transcript	9441380	9442547	.	+	.	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	start_codon	9441380	9441382	.	+	0	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	CDS	9441380	9441462	1	+	0	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	exon	9441380	9441462	.	+	.	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	intron	9441463	9441542	.	+	.	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	CDS	9441543	9442032	0.74	+	1	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	exon	9441543	9442032	.	+	.	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	intron	9442033	9442130	.	+	.	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	CDS	9442131	9442265	0.86	+	0	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	exon	9442131	9442265	.	+	.	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	intron	9442266	9442496	.	+	.	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	CDS	9442497	9442547	0.62	+	0	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	exon	9442497	9442547	.	+	.	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
Ledus.S4	AUGUSTUS	stop_codon	9442548	9442550	.	+	0	transcript_id "Ledus.S4G124000.t1"; gene_id "Ledus.S4G124000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7809.t1 is derived from g12480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6947757	6949676	.	-	.	Ledus.S5G058700
Ledus.S5	AUGUSTUS	transcript	6947757	6949676	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	stop_codon	6947754	6947756	.	-	0	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	CDS	6947757	6948013	0.98	-	2	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	exon	6947757	6948013	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	intron	6948014	6948189	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	CDS	6948190	6948268	1	-	0	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	exon	6948190	6948268	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	intron	6948269	6948357	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	CDS	6948358	6948438	1	-	0	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	exon	6948358	6948438	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	intron	6948439	6948569	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	CDS	6948570	6948623	1	-	0	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	exon	6948570	6948623	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	intron	6948624	6948711	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	CDS	6948712	6948777	1	-	0	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	exon	6948712	6948777	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	intron	6948778	6948872	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	CDS	6948873	6949007	1	-	0	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	exon	6948873	6949007	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	intron	6949008	6949184	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	CDS	6949185	6949334	1	-	0	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	exon	6949185	6949334	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	intron	6949335	6949478	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	CDS	6949479	6949676	1	-	0	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	exon	6949479	6949676	.	-	.	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
Ledus.S5	AUGUSTUS	start_codon	6949674	6949676	.	-	0	transcript_id "Ledus.S5G058700.t1"; gene_id "Ledus.S5G058700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2438.t1 is derived from g9301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18110916	18114201	.	+	.	Ledus.S2G232000
Ledus.S2	AUGUSTUS	transcript	18110916	18114201	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	start_codon	18110916	18110918	.	+	0	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	CDS	18110916	18111492	0.62	+	0	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	exon	18110916	18111492	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	intron	18111493	18111586	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	CDS	18111587	18112272	1	+	2	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	exon	18111587	18112272	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	intron	18112273	18112396	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	CDS	18112397	18112549	0.99	+	0	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	exon	18112397	18112549	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	intron	18112550	18112669	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	CDS	18112670	18112786	1	+	0	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	exon	18112670	18112786	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	intron	18112787	18112974	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	CDS	18112975	18113262	0.96	+	0	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	exon	18112975	18113262	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	intron	18113263	18113347	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	CDS	18113348	18113412	1	+	0	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	exon	18113348	18113412	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	intron	18113413	18113502	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	CDS	18113503	18113582	1	+	1	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	exon	18113503	18113582	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	intron	18113583	18113657	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	CDS	18113658	18113698	1	+	2	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	exon	18113658	18113698	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	intron	18113699	18113838	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	CDS	18113839	18113997	1	+	0	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	exon	18113839	18113997	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	intron	18113998	18114102	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	CDS	18114103	18114201	0.97	+	0	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	exon	18114103	18114201	.	+	.	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
Ledus.S2	AUGUSTUS	stop_codon	18114202	18114204	.	+	0	transcript_id "Ledus.S2G232000.t1"; gene_id "Ledus.S2G232000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3325.t1 is derived from g760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7459762	7466292	.	+	.	Ledus.S1G074600
Ledus.S1	AUGUSTUS	transcript	7459762	7466292	.	+	.	transcript_id "Ledus.S1G074600.t1"; gene_id "Ledus.S1G074600"
Ledus.S1	AUGUSTUS	start_codon	7459762	7459764	.	+	0	transcript_id "Ledus.S1G074600.t1"; gene_id "Ledus.S1G074600"
Ledus.S1	AUGUSTUS	CDS	7459762	7465943	0.21	+	0	transcript_id "Ledus.S1G074600.t1"; gene_id "Ledus.S1G074600"
Ledus.S1	AUGUSTUS	exon	7459762	7465943	.	+	.	transcript_id "Ledus.S1G074600.t1"; gene_id "Ledus.S1G074600"
Ledus.S1	AUGUSTUS	intron	7465944	7466025	.	+	.	transcript_id "Ledus.S1G074600.t1"; gene_id "Ledus.S1G074600"
Ledus.S1	AUGUSTUS	CDS	7466026	7466064	0.96	+	1	transcript_id "Ledus.S1G074600.t1"; gene_id "Ledus.S1G074600"
Ledus.S1	AUGUSTUS	exon	7466026	7466064	.	+	.	transcript_id "Ledus.S1G074600.t1"; gene_id "Ledus.S1G074600"
Ledus.S1	AUGUSTUS	intron	7466065	7466159	.	+	.	transcript_id "Ledus.S1G074600.t1"; gene_id "Ledus.S1G074600"
Ledus.S1	AUGUSTUS	CDS	7466160	7466292	1	+	1	transcript_id "Ledus.S1G074600.t1"; gene_id "Ledus.S1G074600"
Ledus.S1	AUGUSTUS	exon	7466160	7466292	.	+	.	transcript_id "Ledus.S1G074600.t1"; gene_id "Ledus.S1G074600"
Ledus.S1	AUGUSTUS	stop_codon	7466293	7466295	.	+	0	transcript_id "Ledus.S1G074600.t1"; gene_id "Ledus.S1G074600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11309.t1 is derived from g4927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3488429	3497503	.	-	.	Ledus.S4G046500
Ledus.S4	AUGUSTUS	transcript	3488429	3497503	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	stop_codon	3488426	3488428	.	-	0	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	CDS	3488429	3488643	0.63	-	2	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	exon	3488429	3488643	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	intron	3488644	3488755	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	CDS	3488756	3488905	0.96	-	2	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	exon	3488756	3488905	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	intron	3488906	3489030	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	CDS	3489031	3489206	0.82	-	1	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	exon	3489031	3489206	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	intron	3489207	3489328	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	CDS	3489329	3491632	0.99	-	1	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	exon	3489329	3491632	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	intron	3491633	3491735	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	CDS	3491736	3494377	0.71	-	0	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	exon	3491736	3494377	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	intron	3494378	3494506	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	CDS	3494507	3494641	0.94	-	0	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	exon	3494507	3494641	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	intron	3494642	3494913	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	CDS	3494914	3495261	1	-	0	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	exon	3494914	3495261	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	intron	3495262	3495406	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	CDS	3495407	3495625	0.67	-	0	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	exon	3495407	3495625	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	intron	3495626	3495736	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	CDS	3495737	3496267	0.82	-	0	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	exon	3495737	3496267	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	intron	3496268	3496351	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	CDS	3496352	3496721	0.86	-	1	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	exon	3496352	3496721	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	intron	3496722	3496808	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	CDS	3496809	3497503	0.41	-	0	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	exon	3496809	3497503	.	-	.	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
Ledus.S4	AUGUSTUS	start_codon	3497501	3497503	.	-	0	transcript_id "Ledus.S4G046500.t1"; gene_id "Ledus.S4G046500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg630.t1 is derived from g7491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3784946	3786465	.	-	.	Ledus.S2G051200
Ledus.S2	AUGUSTUS	transcript	3784946	3786465	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	stop_codon	3784943	3784945	.	-	0	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	CDS	3784946	3784990	1	-	0	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	exon	3784946	3784990	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	intron	3784991	3785064	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	CDS	3785065	3785124	1	-	0	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	exon	3785065	3785124	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	intron	3785125	3785220	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	CDS	3785221	3785319	1	-	0	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	exon	3785221	3785319	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	intron	3785320	3785407	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	CDS	3785408	3785503	1	-	0	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	exon	3785408	3785503	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	intron	3785504	3785590	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	CDS	3785591	3785698	1	-	0	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	exon	3785591	3785698	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	intron	3785699	3785792	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	CDS	3785793	3785837	1	-	0	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	exon	3785793	3785837	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	intron	3785838	3785914	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	CDS	3785915	3786187	1	-	0	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	exon	3785915	3786187	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	intron	3786188	3786279	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	CDS	3786280	3786465	0.98	-	0	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	exon	3786280	3786465	.	-	.	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
Ledus.S2	AUGUSTUS	start_codon	3786463	3786465	.	-	0	transcript_id "Ledus.S2G051200.t1"; gene_id "Ledus.S2G051200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7409.t1 is derived from g12080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2130266	2135327	.	-	.	Ledus.S5G018700
Ledus.S5	AUGUSTUS	transcript	2130266	2135327	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	stop_codon	2130263	2130265	.	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2130266	2130346	0.97	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2130266	2130346	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2130347	2130451	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2130452	2130545	0.99	-	1	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2130452	2130545	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2130546	2130721	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2130722	2130809	1	-	2	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2130722	2130809	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2130810	2130937	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2130938	2131043	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2130938	2131043	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2131044	2131139	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2131140	2131226	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2131140	2131226	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2131227	2131376	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2131377	2131425	1	-	1	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2131377	2131425	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2131426	2131534	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2131535	2131638	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2131535	2131638	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2131639	2131822	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2131823	2131915	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2131823	2131915	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2131916	2132037	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2132038	2132112	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2132038	2132112	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2132113	2132206	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2132207	2132260	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2132207	2132260	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2132261	2132420	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2132421	2132489	0.98	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2132421	2132489	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2132490	2132595	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2132596	2132664	0.99	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2132596	2132664	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2132665	2132765	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2132766	2132801	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2132766	2132801	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2132802	2132899	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2132900	2132997	1	-	2	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2132900	2132997	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2132998	2133139	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2133140	2133224	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2133140	2133224	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2133225	2133309	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2133310	2133396	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2133310	2133396	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2133397	2133537	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2133538	2133613	1	-	1	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2133538	2133613	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2133614	2133758	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2133759	2133868	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2133759	2133868	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2133869	2134024	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2134025	2134102	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2134025	2134102	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2134103	2134218	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2134219	2134308	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2134219	2134308	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2134309	2134444	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2134445	2134554	1	-	2	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2134445	2134554	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2134555	2134666	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2134667	2134784	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2134667	2134784	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2134785	2134874	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2134875	2135096	1	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2134875	2135096	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	intron	2135097	2135297	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	CDS	2135298	2135327	0.9	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	exon	2135298	2135327	.	-	.	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
Ledus.S5	AUGUSTUS	start_codon	2135325	2135327	.	-	0	transcript_id "Ledus.S5G018700.t1"; gene_id "Ledus.S5G018700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3679.t1 is derived from g1115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10625935	10627192	.	-	.	Ledus.S1G110000
Ledus.S1	AUGUSTUS	transcript	10625935	10627192	.	-	.	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	stop_codon	10625932	10625934	.	-	0	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	CDS	10625935	10626088	0.72	-	1	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	exon	10625935	10626088	.	-	.	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	intron	10626089	10626161	.	-	.	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	CDS	10626162	10626229	1	-	0	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	exon	10626162	10626229	.	-	.	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	intron	10626230	10626322	.	-	.	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	CDS	10626323	10626533	1	-	1	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	exon	10626323	10626533	.	-	.	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	intron	10626534	10626619	.	-	.	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	CDS	10626620	10626971	1	-	2	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	exon	10626620	10626971	.	-	.	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	intron	10626972	10627053	.	-	.	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	CDS	10627054	10627192	0.91	-	0	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	exon	10627054	10627192	.	-	.	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
Ledus.S1	AUGUSTUS	start_codon	10627190	10627192	.	-	0	transcript_id "Ledus.S1G110000.t1"; gene_id "Ledus.S1G110000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10126.t1 is derived from g11156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12952556	12953824	.	+	.	Ledus.S3G160300
Ledus.S3	AUGUSTUS	transcript	12952556	12953824	.	+	.	transcript_id "Ledus.S3G160300.t1"; gene_id "Ledus.S3G160300"
Ledus.S3	AUGUSTUS	start_codon	12952556	12952558	.	+	0	transcript_id "Ledus.S3G160300.t1"; gene_id "Ledus.S3G160300"
Ledus.S3	AUGUSTUS	CDS	12952556	12953328	0.84	+	0	transcript_id "Ledus.S3G160300.t1"; gene_id "Ledus.S3G160300"
Ledus.S3	AUGUSTUS	exon	12952556	12953328	.	+	.	transcript_id "Ledus.S3G160300.t1"; gene_id "Ledus.S3G160300"
Ledus.S3	AUGUSTUS	intron	12953329	12953404	.	+	.	transcript_id "Ledus.S3G160300.t1"; gene_id "Ledus.S3G160300"
Ledus.S3	AUGUSTUS	CDS	12953405	12953571	1	+	1	transcript_id "Ledus.S3G160300.t1"; gene_id "Ledus.S3G160300"
Ledus.S3	AUGUSTUS	exon	12953405	12953571	.	+	.	transcript_id "Ledus.S3G160300.t1"; gene_id "Ledus.S3G160300"
Ledus.S3	AUGUSTUS	intron	12953572	12953645	.	+	.	transcript_id "Ledus.S3G160300.t1"; gene_id "Ledus.S3G160300"
Ledus.S3	AUGUSTUS	CDS	12953646	12953824	1	+	2	transcript_id "Ledus.S3G160300.t1"; gene_id "Ledus.S3G160300"
Ledus.S3	AUGUSTUS	exon	12953646	12953824	.	+	.	transcript_id "Ledus.S3G160300.t1"; gene_id "Ledus.S3G160300"
Ledus.S3	AUGUSTUS	stop_codon	12953825	12953827	.	+	0	transcript_id "Ledus.S3G160300.t1"; gene_id "Ledus.S3G160300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6609.t1 is derived from g4052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32636248	32639434	.	-	.	Ledus.S1G403000
Ledus.S1	AUGUSTUS	transcript	32636248	32639434	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	stop_codon	32636245	32636247	.	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32636248	32636505	0.95	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32636248	32636505	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	intron	32636506	32636601	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32636602	32636778	1	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32636602	32636778	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	intron	32636779	32636868	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32636869	32636934	1	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32636869	32636934	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	intron	32636935	32637027	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32637028	32637105	1	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32637028	32637105	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	intron	32637106	32637193	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32637194	32637426	1	-	2	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32637194	32637426	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	intron	32637427	32637527	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32637528	32637663	0.99	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32637528	32637663	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	intron	32637664	32637754	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32637755	32637823	1	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32637755	32637823	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	intron	32637824	32637938	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32637939	32638100	1	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32637939	32638100	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	intron	32638101	32638196	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32638197	32638291	1	-	2	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32638197	32638291	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	intron	32638292	32638413	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32638414	32638546	1	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32638414	32638546	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	intron	32638547	32638623	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32638624	32638806	1	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32638624	32638806	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	intron	32638807	32638896	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32638897	32639058	1	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32638897	32639058	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	intron	32639059	32639146	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	CDS	32639147	32639434	0.4	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	exon	32639147	32639434	.	-	.	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
Ledus.S1	AUGUSTUS	start_codon	32639432	32639434	.	-	0	transcript_id "Ledus.S1G403000.t1"; gene_id "Ledus.S1G403000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12963.t1 is derived from g6773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1127531	1127746	.	+	.	Ledus.S6G002500
Ledus.S6	AUGUSTUS	transcript	1127531	1127746	.	+	.	transcript_id "Ledus.S6G002500.t1"; gene_id "Ledus.S6G002500"
Ledus.S6	AUGUSTUS	start_codon	1127531	1127533	.	+	0	transcript_id "Ledus.S6G002500.t1"; gene_id "Ledus.S6G002500"
Ledus.S6	AUGUSTUS	CDS	1127531	1127746	0.99	+	0	transcript_id "Ledus.S6G002500.t1"; gene_id "Ledus.S6G002500"
Ledus.S6	AUGUSTUS	exon	1127531	1127746	.	+	.	transcript_id "Ledus.S6G002500.t1"; gene_id "Ledus.S6G002500"
Ledus.S6	AUGUSTUS	stop_codon	1127747	1127749	.	+	0	transcript_id "Ledus.S6G002500.t1"; gene_id "Ledus.S6G002500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9729.t1 is derived from g10759.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9466730	9470345	.	+	.	Ledus.S3G120600
Ledus.S3	AUGUSTUS	transcript	9466730	9470345	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	start_codon	9466730	9466732	.	+	0	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9466730	9466784	0.99	+	0	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9466730	9466784	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9466785	9466897	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9466898	9467190	0.99	+	2	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9466898	9467190	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9467191	9467297	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9467298	9467399	0.49	+	0	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9467298	9467399	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9467400	9467483	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9467484	9467531	1	+	0	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9467484	9467531	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9467532	9467635	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9467636	9467706	1	+	0	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9467636	9467706	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9467707	9467831	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9467832	9467950	0.97	+	1	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9467832	9467950	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9467951	9468049	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9468050	9468145	1	+	2	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9468050	9468145	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9468146	9468244	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9468245	9468354	1	+	2	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9468245	9468354	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9468355	9468551	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9468552	9468632	1	+	0	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9468552	9468632	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9468633	9468800	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9468801	9468904	0.6	+	0	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9468801	9468904	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9468905	9469023	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9469024	9469132	0.6	+	1	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9469024	9469132	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9469133	9469397	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9469398	9469503	1	+	0	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9469398	9469503	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9469504	9469587	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9469588	9469673	0.99	+	2	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9469588	9469673	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9469674	9469790	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9469791	9469916	0.68	+	0	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9469791	9469916	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9469917	9470018	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9470019	9470167	1	+	0	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9470019	9470167	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9470168	9470326	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9470327	9470345	1	+	1	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9470327	9470345	.	+	.	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	stop_codon	9470346	9470348	.	+	0	transcript_id "Ledus.S3G120600.t1"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	transcript	9466773	9470345	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	start_codon	9466773	9466775	.	+	0	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9466773	9466784	0.68	+	0	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9466773	9466784	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9466785	9466962	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9466963	9467190	0.7	+	0	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9466963	9467190	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9467191	9467297	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9467298	9467399	0.49	+	0	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9467298	9467399	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9467400	9467483	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9467484	9467531	1	+	0	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9467484	9467531	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9467532	9467635	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9467636	9467706	1	+	0	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9467636	9467706	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9467707	9467831	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9467832	9467950	0.96	+	1	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9467832	9467950	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9467951	9468049	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9468050	9468145	1	+	2	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9468050	9468145	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9468146	9468244	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9468245	9468354	1	+	2	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9468245	9468354	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9468355	9468551	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9468552	9468632	1	+	0	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9468552	9468632	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9468633	9468800	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9468801	9468904	0.69	+	0	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9468801	9468904	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9468905	9469023	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9469024	9469132	0.7	+	1	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9469024	9469132	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9469133	9469397	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9469398	9469503	1	+	0	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9469398	9469503	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9469504	9469587	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9469588	9469673	1	+	2	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9469588	9469673	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9469674	9469790	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9469791	9469916	0.65	+	0	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9469791	9469916	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9469917	9470018	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9470019	9470167	1	+	0	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9470019	9470167	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	intron	9470168	9470326	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	CDS	9470327	9470345	1	+	1	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	exon	9470327	9470345	.	+	.	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
Ledus.S3	AUGUSTUS	stop_codon	9470346	9470348	.	+	0	transcript_id "Ledus.S3G120600.t2"; gene_id "Ledus.S3G120600"
# This transcript jg12461.t2 is derived from g6082.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12462.t1 is derived from g6083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12105402	12108339	.	-	.	Ledus.S4G161800
Ledus.S4	AUGUSTUS	transcript	12105402	12108339	.	-	.	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	stop_codon	12105399	12105401	.	-	0	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	CDS	12105402	12105698	0.98	-	0	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	exon	12105402	12105698	.	-	.	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	intron	12105699	12105774	.	-	.	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	CDS	12105775	12105831	1	-	0	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	exon	12105775	12105831	.	-	.	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	intron	12105832	12105940	.	-	.	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	CDS	12105941	12106044	1	-	2	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	exon	12105941	12106044	.	-	.	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	intron	12106045	12106168	.	-	.	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	CDS	12106169	12106242	1	-	1	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	exon	12106169	12106242	.	-	.	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	intron	12106243	12106358	.	-	.	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	CDS	12106359	12106414	0.27	-	0	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	exon	12106359	12106414	.	-	.	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	intron	12106415	12106692	.	-	.	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	CDS	12106693	12108339	0.36	-	0	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	exon	12106693	12108339	.	-	.	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
Ledus.S4	AUGUSTUS	start_codon	12108337	12108339	.	-	0	transcript_id "Ledus.S4G161800.t1"; gene_id "Ledus.S4G161800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg900.t1 is derived from g7761.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6024806	6029824	.	-	.	Ledus.S2G078200
Ledus.S2	AUGUSTUS	transcript	6024806	6029824	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	stop_codon	6024803	6024805	.	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6024806	6025147	1	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6024806	6025147	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6025148	6025246	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6025247	6025345	1	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6025247	6025345	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6025346	6025429	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6025430	6025637	1	-	1	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6025430	6025637	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6025638	6025714	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6025715	6025773	1	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6025715	6025773	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6025774	6025871	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6025872	6025949	1	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6025872	6025949	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6025950	6026077	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6026078	6026161	1	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6026078	6026161	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6026162	6026262	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6026263	6026376	0.46	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6026263	6026376	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6026377	6026486	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6026487	6026606	0.42	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6026487	6026606	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6026607	6026746	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6026747	6026873	1	-	1	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6026747	6026873	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6026874	6026962	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6026963	6027054	1	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6026963	6027054	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6027055	6027204	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6027205	6027291	1	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6027205	6027291	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6027292	6027368	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6027369	6027443	0.49	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6027369	6027443	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6027444	6027558	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6027559	6027609	0.29	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6027559	6027609	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6027610	6027737	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6027738	6027833	0.53	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6027738	6027833	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6027834	6027920	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6027921	6028007	1	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6027921	6028007	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6028008	6028096	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6028097	6028153	0.99	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6028097	6028153	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6028154	6028252	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6028253	6028378	0.91	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6028253	6028378	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6028379	6028507	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6028508	6028748	0.99	-	1	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6028508	6028748	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6028749	6028849	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6028850	6028942	1	-	1	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6028850	6028942	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6028943	6029039	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6029040	6029399	0.99	-	1	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6029040	6029399	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6029400	6029492	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6029493	6029824	0.8	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6029493	6029824	.	-	.	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	start_codon	6029822	6029824	.	-	0	transcript_id "Ledus.S2G078200.t1"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	transcript	6024806	6029824	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	stop_codon	6024803	6024805	.	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6024806	6025147	1	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6024806	6025147	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6025148	6025246	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6025247	6025345	1	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6025247	6025345	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6025346	6025429	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6025430	6025637	1	-	1	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6025430	6025637	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6025638	6025714	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6025715	6025773	1	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6025715	6025773	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6025774	6025871	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6025872	6025949	1	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6025872	6025949	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6025950	6026077	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6026078	6026161	1	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6026078	6026161	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6026162	6026262	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6026263	6026376	0.34	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6026263	6026376	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6026377	6026486	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6026487	6026606	0.33	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6026487	6026606	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6026607	6026746	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6026747	6026873	1	-	1	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6026747	6026873	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6026874	6026962	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6026963	6027054	1	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6026963	6027054	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6027055	6027204	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6027205	6027291	1	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6027205	6027291	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6027292	6027368	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6027369	6027443	0.39	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6027369	6027443	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6027444	6027558	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6027559	6027609	0.21	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6027559	6027609	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6027610	6027737	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6027738	6027833	0.41	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6027738	6027833	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6027834	6027920	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6027921	6028007	1	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6027921	6028007	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6028008	6028093	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6028094	6028153	1	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6028094	6028153	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6028154	6028252	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6028253	6028378	0.91	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6028253	6028378	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6028379	6028507	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6028508	6028748	0.99	-	1	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6028508	6028748	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6028749	6028849	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6028850	6028942	1	-	1	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6028850	6028942	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6028943	6029039	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6029040	6029399	1	-	1	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6029040	6029399	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	intron	6029400	6029492	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	CDS	6029493	6029824	0.76	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	exon	6029493	6029824	.	-	.	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
Ledus.S2	AUGUSTUS	start_codon	6029822	6029824	.	-	0	transcript_id "Ledus.S2G078200.t2"; gene_id "Ledus.S2G078200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7700.t1 is derived from g12371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5279926	5282835	.	-	.	Ledus.S5G047800
Ledus.S5	AUGUSTUS	transcript	5279926	5282835	.	-	.	transcript_id "Ledus.S5G047800.t1"; gene_id "Ledus.S5G047800"
Ledus.S5	AUGUSTUS	stop_codon	5279923	5279925	.	-	0	transcript_id "Ledus.S5G047800.t1"; gene_id "Ledus.S5G047800"
Ledus.S5	AUGUSTUS	CDS	5279926	5279994	1	-	0	transcript_id "Ledus.S5G047800.t1"; gene_id "Ledus.S5G047800"
Ledus.S5	AUGUSTUS	exon	5279926	5279994	.	-	.	transcript_id "Ledus.S5G047800.t1"; gene_id "Ledus.S5G047800"
Ledus.S5	AUGUSTUS	intron	5279995	5280465	.	-	.	transcript_id "Ledus.S5G047800.t1"; gene_id "Ledus.S5G047800"
Ledus.S5	AUGUSTUS	CDS	5280466	5280520	1	-	1	transcript_id "Ledus.S5G047800.t1"; gene_id "Ledus.S5G047800"
Ledus.S5	AUGUSTUS	exon	5280466	5280520	.	-	.	transcript_id "Ledus.S5G047800.t1"; gene_id "Ledus.S5G047800"
Ledus.S5	AUGUSTUS	intron	5280521	5282512	.	-	.	transcript_id "Ledus.S5G047800.t1"; gene_id "Ledus.S5G047800"
Ledus.S5	AUGUSTUS	CDS	5282513	5282835	0.03	-	0	transcript_id "Ledus.S5G047800.t1"; gene_id "Ledus.S5G047800"
Ledus.S5	AUGUSTUS	exon	5282513	5282835	.	-	.	transcript_id "Ledus.S5G047800.t1"; gene_id "Ledus.S5G047800"
Ledus.S5	AUGUSTUS	start_codon	5282833	5282835	.	-	0	transcript_id "Ledus.S5G047800.t1"; gene_id "Ledus.S5G047800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4674.t1 is derived from g2112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18930368	18931535	.	-	.	Ledus.S1G209500
Ledus.S1	AUGUSTUS	transcript	18930368	18931535	.	-	.	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	stop_codon	18930365	18930367	.	-	0	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	CDS	18930368	18930523	0.39	-	0	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	exon	18930368	18930523	.	-	.	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	intron	18930524	18930756	.	-	.	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	CDS	18930757	18930993	0.99	-	0	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	exon	18930757	18930993	.	-	.	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	intron	18930994	18931063	.	-	.	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	CDS	18931064	18931191	1	-	2	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	exon	18931064	18931191	.	-	.	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	intron	18931192	18931270	.	-	.	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	CDS	18931271	18931535	0.77	-	0	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	exon	18931271	18931535	.	-	.	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
Ledus.S1	AUGUSTUS	start_codon	18931533	18931535	.	-	0	transcript_id "Ledus.S1G209500.t1"; gene_id "Ledus.S1G209500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7394.t1 is derived from g12065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2061190	2061621	.	+	.	Ledus.S5G017200
Ledus.S5	AUGUSTUS	transcript	2061190	2061621	.	+	.	transcript_id "Ledus.S5G017200.t1"; gene_id "Ledus.S5G017200"
Ledus.S5	AUGUSTUS	start_codon	2061190	2061192	.	+	0	transcript_id "Ledus.S5G017200.t1"; gene_id "Ledus.S5G017200"
Ledus.S5	AUGUSTUS	CDS	2061190	2061621	0.51	+	0	transcript_id "Ledus.S5G017200.t1"; gene_id "Ledus.S5G017200"
Ledus.S5	AUGUSTUS	exon	2061190	2061621	.	+	.	transcript_id "Ledus.S5G017200.t1"; gene_id "Ledus.S5G017200"
Ledus.S5	AUGUSTUS	stop_codon	2061622	2061624	.	+	0	transcript_id "Ledus.S5G017200.t1"; gene_id "Ledus.S5G017200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2219.t1 is derived from g9082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16143612	16144314	.	+	.	Ledus.S2G210100
Ledus.S2	AUGUSTUS	transcript	16143612	16144314	.	+	.	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	start_codon	16143612	16143614	.	+	0	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	CDS	16143612	16143830	0.8	+	0	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	exon	16143612	16143830	.	+	.	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	intron	16143831	16143952	.	+	.	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	CDS	16143953	16143957	0.78	+	0	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	exon	16143953	16143957	.	+	.	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	intron	16143958	16144097	.	+	.	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	CDS	16144098	16144112	0.8	+	1	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	exon	16144098	16144112	.	+	.	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	intron	16144113	16144214	.	+	.	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	CDS	16144215	16144314	0.79	+	1	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	exon	16144215	16144314	.	+	.	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
Ledus.S2	AUGUSTUS	stop_codon	16144315	16144317	.	+	0	transcript_id "Ledus.S2G210100.t1"; gene_id "Ledus.S2G210100"
# This transcript jg5346.t2 is derived from g2785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5347.t1 is derived from g2786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23555636	23556397	.	-	.	Ledus.S1G276800
Ledus.S1	AUGUSTUS	transcript	23555636	23556397	.	-	.	transcript_id "Ledus.S1G276800.t1"; gene_id "Ledus.S1G276800"
Ledus.S1	AUGUSTUS	stop_codon	23555633	23555635	.	-	0	transcript_id "Ledus.S1G276800.t1"; gene_id "Ledus.S1G276800"
Ledus.S1	AUGUSTUS	CDS	23555636	23555835	0.7	-	2	transcript_id "Ledus.S1G276800.t1"; gene_id "Ledus.S1G276800"
Ledus.S1	AUGUSTUS	exon	23555636	23555835	.	-	.	transcript_id "Ledus.S1G276800.t1"; gene_id "Ledus.S1G276800"
Ledus.S1	AUGUSTUS	intron	23555836	23556183	.	-	.	transcript_id "Ledus.S1G276800.t1"; gene_id "Ledus.S1G276800"
Ledus.S1	AUGUSTUS	CDS	23556184	23556397	0.63	-	0	transcript_id "Ledus.S1G276800.t1"; gene_id "Ledus.S1G276800"
Ledus.S1	AUGUSTUS	exon	23556184	23556397	.	-	.	transcript_id "Ledus.S1G276800.t1"; gene_id "Ledus.S1G276800"
Ledus.S1	AUGUSTUS	start_codon	23556395	23556397	.	-	0	transcript_id "Ledus.S1G276800.t1"; gene_id "Ledus.S1G276800"
# This transcript jg6526.t2 is derived from g3969.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6527.t1 is derived from g3970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32085591	32085800	.	+	.	Ledus.S1G394800
Ledus.S1	AUGUSTUS	transcript	32085591	32085800	.	+	.	transcript_id "Ledus.S1G394800.t1"; gene_id "Ledus.S1G394800"
Ledus.S1	AUGUSTUS	start_codon	32085591	32085593	.	+	0	transcript_id "Ledus.S1G394800.t1"; gene_id "Ledus.S1G394800"
Ledus.S1	AUGUSTUS	CDS	32085591	32085800	0.64	+	0	transcript_id "Ledus.S1G394800.t1"; gene_id "Ledus.S1G394800"
Ledus.S1	AUGUSTUS	exon	32085591	32085800	.	+	.	transcript_id "Ledus.S1G394800.t1"; gene_id "Ledus.S1G394800"
Ledus.S1	AUGUSTUS	stop_codon	32085801	32085803	.	+	0	transcript_id "Ledus.S1G394800.t1"; gene_id "Ledus.S1G394800"
# This transcript jg10530.t2 is derived from g11560.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10531.t1 is derived from g11561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15956742	15958389	.	+	.	Ledus.S3G200800
Ledus.S3	AUGUSTUS	transcript	15956742	15958389	.	+	.	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	start_codon	15956742	15956744	.	+	0	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	CDS	15956742	15956811	1	+	0	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	exon	15956742	15956811	.	+	.	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	intron	15956812	15956909	.	+	.	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	CDS	15956910	15957308	1	+	2	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	exon	15956910	15957308	.	+	.	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	intron	15957309	15957386	.	+	.	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	CDS	15957387	15957493	0.9	+	2	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	exon	15957387	15957493	.	+	.	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	intron	15957494	15957594	.	+	.	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	CDS	15957595	15958389	1	+	0	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	exon	15957595	15958389	.	+	.	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
Ledus.S3	AUGUSTUS	stop_codon	15958390	15958392	.	+	0	transcript_id "Ledus.S3G200800.t1"; gene_id "Ledus.S3G200800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1983.t1 is derived from g8846.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14047221	14053570	.	+	.	Ledus.S2G186500
Ledus.S2	AUGUSTUS	transcript	14047221	14053570	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	start_codon	14047221	14047223	.	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14047221	14047331	0.61	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14047221	14047331	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14047332	14047740	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14047741	14047819	0.9	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14047741	14047819	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14047820	14047952	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14047953	14048002	0.76	+	2	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14047953	14048002	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14048003	14048213	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14048214	14048361	1	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14048214	14048361	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14048362	14048502	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14048503	14049014	1	+	2	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14048503	14049014	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14049015	14049376	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14049377	14049676	1	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14049377	14049676	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14049677	14049841	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14049842	14049916	1	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14049842	14049916	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14049917	14050003	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14050004	14050125	0.79	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14050004	14050125	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14050126	14050231	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14050232	14050338	1	+	1	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14050232	14050338	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14050339	14050528	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14050529	14050588	1	+	2	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14050529	14050588	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14050589	14050669	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14050670	14050743	1	+	2	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14050670	14050743	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14050744	14050972	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14050973	14051023	0.99	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14050973	14051023	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14051024	14051145	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14051146	14051195	0.99	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14051146	14051195	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14051196	14051320	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14051321	14051387	1	+	1	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14051321	14051387	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14051388	14051498	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14051499	14051588	1	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14051499	14051588	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14051589	14051668	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14051669	14051731	1	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14051669	14051731	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14051732	14051814	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14051815	14051910	1	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14051815	14051910	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14051911	14052004	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14052005	14052094	0.99	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14052005	14052094	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14052095	14052204	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14052205	14052256	0.47	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14052205	14052256	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14052257	14052621	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14052622	14052979	0.55	+	2	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14052622	14052979	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14052980	14053062	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14053063	14053570	1	+	1	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14053063	14053570	.	+	.	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	stop_codon	14053571	14053573	.	+	0	transcript_id "Ledus.S2G186500.t1"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	transcript	14047221	14053570	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	start_codon	14047221	14047223	.	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14047221	14047331	0.57	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14047221	14047331	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14047332	14048213	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14048214	14048361	1	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14048214	14048361	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14048362	14048502	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14048503	14049014	0.73	+	2	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14048503	14049014	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14049015	14049156	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14049157	14049180	0.99	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14049157	14049180	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14049181	14049376	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14049377	14049676	1	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14049377	14049676	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14049677	14049841	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14049842	14049916	1	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14049842	14049916	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14049917	14050003	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14050004	14050125	0.91	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14050004	14050125	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14050126	14050231	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14050232	14050338	1	+	1	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14050232	14050338	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14050339	14050528	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14050529	14050588	1	+	2	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14050529	14050588	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14050589	14050669	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14050670	14050743	1	+	2	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14050670	14050743	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14050744	14050972	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14050973	14051023	0.99	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14050973	14051023	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14051024	14051145	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14051146	14051195	0.99	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14051146	14051195	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14051196	14051320	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14051321	14051387	0.99	+	1	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14051321	14051387	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14051388	14051498	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14051499	14051588	1	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14051499	14051588	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14051589	14051668	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14051669	14051731	1	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14051669	14051731	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14051732	14051814	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14051815	14051910	1	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14051815	14051910	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14051911	14052004	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14052005	14052094	1	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14052005	14052094	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14052095	14052204	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14052205	14052256	0.37	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14052205	14052256	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14052257	14052621	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14052622	14052979	0.54	+	2	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14052622	14052979	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	intron	14052980	14053062	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	CDS	14053063	14053570	1	+	1	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	exon	14053063	14053570	.	+	.	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
Ledus.S2	AUGUSTUS	stop_codon	14053571	14053573	.	+	0	transcript_id "Ledus.S2G186500.t2"; gene_id "Ledus.S2G186500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9535.t1 is derived from g10565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7619125	7622126	.	-	.	Ledus.S3G101200
Ledus.S3	AUGUSTUS	transcript	7619125	7622126	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	stop_codon	7619122	7619124	.	-	0	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7619125	7619182	0.8	-	1	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7619125	7619182	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7619183	7619253	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7619254	7619366	0.83	-	0	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7619254	7619366	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7619367	7619448	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7619449	7619519	0.82	-	2	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7619449	7619519	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7619520	7619816	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7619817	7619939	0.96	-	2	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7619817	7619939	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7619940	7620025	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7620026	7620135	1	-	1	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7620026	7620135	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7620136	7620275	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7620276	7620401	1	-	1	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7620276	7620401	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7620402	7620492	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7620493	7620580	1	-	2	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7620493	7620580	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7620581	7620702	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7620703	7620823	1	-	0	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7620703	7620823	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7620824	7620933	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7620934	7621006	0.99	-	1	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7620934	7621006	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7621007	7621109	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7621110	7621173	1	-	2	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7621110	7621173	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7621174	7621255	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7621256	7621473	1	-	1	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7621256	7621473	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7621474	7621559	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7621560	7621630	1	-	0	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7621560	7621630	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7621631	7621795	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7621796	7621901	1	-	1	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7621796	7621901	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7621902	7622031	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7622032	7622126	0.98	-	0	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7622032	7622126	.	-	.	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	start_codon	7622124	7622126	.	-	0	transcript_id "Ledus.S3G101200.t1"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	transcript	7619125	7622126	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	stop_codon	7619122	7619124	.	-	0	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7619125	7619182	0.74	-	1	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7619125	7619182	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7619183	7619253	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7619254	7619366	0.74	-	0	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7619254	7619366	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7619367	7619448	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7619449	7619519	0.74	-	2	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7619449	7619519	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7619520	7619816	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7619817	7619939	0.95	-	2	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7619817	7619939	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7619940	7620025	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7620026	7620135	1	-	1	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7620026	7620135	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7620136	7620275	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7620276	7620401	1	-	1	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7620276	7620401	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7620402	7620492	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7620493	7620580	1	-	2	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7620493	7620580	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7620581	7620702	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7620703	7620823	1	-	0	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7620703	7620823	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7620824	7620933	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7620934	7621006	0.98	-	1	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7620934	7621006	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7621007	7621109	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7621110	7621173	1	-	2	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7621110	7621173	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7621174	7621255	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7621256	7621473	1	-	1	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7621256	7621473	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7621474	7621559	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7621560	7621627	0.97	-	0	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7621560	7621627	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7621628	7621795	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7621796	7621901	1	-	1	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7621796	7621901	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	intron	7621902	7622031	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	CDS	7622032	7622126	0.96	-	0	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	exon	7622032	7622126	.	-	.	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
Ledus.S3	AUGUSTUS	start_codon	7622124	7622126	.	-	0	transcript_id "Ledus.S3G101200.t2"; gene_id "Ledus.S3G101200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7063.t1 is derived from g6594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1155784	1159605	.	+	.	Ledus.C7G012400
Ledus.C7	AUGUSTUS	transcript	1155784	1159605	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	start_codon	1155784	1155786	.	+	0	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1155784	1155829	0.54	+	0	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1155784	1155829	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1155830	1155925	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1155926	1156027	0.69	+	2	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1155926	1156027	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1156028	1156263	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1156264	1156311	0.9	+	2	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1156264	1156311	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1156312	1156470	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1156471	1156481	1	+	2	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1156471	1156481	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1156482	1156665	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1156666	1156911	1	+	0	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1156666	1156911	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1156912	1156990	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1156991	1157173	1	+	0	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1156991	1157173	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1157174	1157266	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1157267	1157327	1	+	0	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1157267	1157327	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1157328	1157432	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1157433	1157515	1	+	2	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1157433	1157515	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1157516	1157650	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1157651	1157824	1	+	0	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1157651	1157824	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1157825	1157911	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1157912	1158085	1	+	0	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1157912	1158085	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1158086	1158164	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1158165	1158259	1	+	0	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1158165	1158259	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1158260	1158377	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1158378	1158489	0.93	+	1	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1158378	1158489	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1158490	1158594	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1158595	1158675	0.67	+	0	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1158595	1158675	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1158676	1158769	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1158770	1158947	1	+	0	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1158770	1158947	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1158948	1159085	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1159086	1159420	1	+	2	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1159086	1159420	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1159421	1159524	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1159525	1159605	1	+	0	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1159525	1159605	.	+	.	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	stop_codon	1159606	1159608	.	+	0	transcript_id "Ledus.C7G012400.t1"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	transcript	1155784	1159605	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	start_codon	1155784	1155786	.	+	0	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1155784	1155829	0.58	+	0	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1155784	1155829	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1155830	1155925	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1155926	1156027	0.6	+	2	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1155926	1156027	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1156028	1156263	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1156264	1156311	0.86	+	2	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1156264	1156311	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1156312	1156417	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1156418	1156481	0.72	+	2	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1156418	1156481	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1156482	1156560	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1156561	1156570	1	+	1	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1156561	1156570	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1156571	1156665	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1156666	1156911	1	+	0	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1156666	1156911	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1156912	1156990	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1156991	1157173	1	+	0	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1156991	1157173	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1157174	1157266	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1157267	1157327	1	+	0	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1157267	1157327	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1157328	1157432	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1157433	1157515	1	+	2	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1157433	1157515	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1157516	1157650	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1157651	1157824	1	+	0	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1157651	1157824	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1157825	1157911	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1157912	1158085	1	+	0	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1157912	1158085	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1158086	1158164	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1158165	1158259	1	+	0	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1158165	1158259	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1158260	1158377	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1158378	1158489	0.94	+	1	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1158378	1158489	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1158490	1158594	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1158595	1158675	0.64	+	0	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1158595	1158675	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1158676	1158769	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1158770	1158947	1	+	0	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1158770	1158947	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1158948	1159085	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1159086	1159420	1	+	2	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1159086	1159420	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	intron	1159421	1159524	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	CDS	1159525	1159605	1	+	0	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	exon	1159525	1159605	.	+	.	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
Ledus.C7	AUGUSTUS	stop_codon	1159606	1159608	.	+	0	transcript_id "Ledus.C7G012400.t2"; gene_id "Ledus.C7G012400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10370.t1 is derived from g11400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14474756	14476407	.	+	.	Ledus.S3G184700
Ledus.S3	AUGUSTUS	transcript	14474756	14476407	.	+	.	transcript_id "Ledus.S3G184700.t1"; gene_id "Ledus.S3G184700"
Ledus.S3	AUGUSTUS	start_codon	14474756	14474758	.	+	0	transcript_id "Ledus.S3G184700.t1"; gene_id "Ledus.S3G184700"
Ledus.S3	AUGUSTUS	CDS	14474756	14474835	0.99	+	0	transcript_id "Ledus.S3G184700.t1"; gene_id "Ledus.S3G184700"
Ledus.S3	AUGUSTUS	exon	14474756	14474835	.	+	.	transcript_id "Ledus.S3G184700.t1"; gene_id "Ledus.S3G184700"
Ledus.S3	AUGUSTUS	intron	14474836	14475015	.	+	.	transcript_id "Ledus.S3G184700.t1"; gene_id "Ledus.S3G184700"
Ledus.S3	AUGUSTUS	CDS	14475016	14476002	0.41	+	1	transcript_id "Ledus.S3G184700.t1"; gene_id "Ledus.S3G184700"
Ledus.S3	AUGUSTUS	exon	14475016	14476002	.	+	.	transcript_id "Ledus.S3G184700.t1"; gene_id "Ledus.S3G184700"
Ledus.S3	AUGUSTUS	intron	14476003	14476319	.	+	.	transcript_id "Ledus.S3G184700.t1"; gene_id "Ledus.S3G184700"
Ledus.S3	AUGUSTUS	CDS	14476320	14476407	0.43	+	1	transcript_id "Ledus.S3G184700.t1"; gene_id "Ledus.S3G184700"
Ledus.S3	AUGUSTUS	exon	14476320	14476407	.	+	.	transcript_id "Ledus.S3G184700.t1"; gene_id "Ledus.S3G184700"
Ledus.S3	AUGUSTUS	stop_codon	14476408	14476410	.	+	0	transcript_id "Ledus.S3G184700.t1"; gene_id "Ledus.S3G184700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4320.t1 is derived from g1756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16246408	16248205	.	+	.	Ledus.S1G174100
Ledus.S1	AUGUSTUS	transcript	16246408	16248205	.	+	.	transcript_id "Ledus.S1G174100.t1"; gene_id "Ledus.S1G174100"
Ledus.S1	AUGUSTUS	start_codon	16246408	16246410	.	+	0	transcript_id "Ledus.S1G174100.t1"; gene_id "Ledus.S1G174100"
Ledus.S1	AUGUSTUS	CDS	16246408	16246519	0.95	+	0	transcript_id "Ledus.S1G174100.t1"; gene_id "Ledus.S1G174100"
Ledus.S1	AUGUSTUS	exon	16246408	16246519	.	+	.	transcript_id "Ledus.S1G174100.t1"; gene_id "Ledus.S1G174100"
Ledus.S1	AUGUSTUS	intron	16246520	16246598	.	+	.	transcript_id "Ledus.S1G174100.t1"; gene_id "Ledus.S1G174100"
Ledus.S1	AUGUSTUS	CDS	16246599	16248205	0.98	+	2	transcript_id "Ledus.S1G174100.t1"; gene_id "Ledus.S1G174100"
Ledus.S1	AUGUSTUS	exon	16246599	16248205	.	+	.	transcript_id "Ledus.S1G174100.t1"; gene_id "Ledus.S1G174100"
Ledus.S1	AUGUSTUS	stop_codon	16248206	16248208	.	+	0	transcript_id "Ledus.S1G174100.t1"; gene_id "Ledus.S1G174100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8249.t1 is derived from g12920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10157598	10159018	.	+	.	Ledus.S5G102700
Ledus.S5	AUGUSTUS	transcript	10157598	10159018	.	+	.	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	start_codon	10157598	10157600	.	+	0	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	CDS	10157598	10157659	0.96	+	0	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	exon	10157598	10157659	.	+	.	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	intron	10157660	10158024	.	+	.	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	CDS	10158025	10158073	1	+	1	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	exon	10158025	10158073	.	+	.	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	intron	10158074	10158328	.	+	.	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	CDS	10158329	10158532	1	+	0	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	exon	10158329	10158532	.	+	.	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	intron	10158533	10158622	.	+	.	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	CDS	10158623	10159018	1	+	0	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	exon	10158623	10159018	.	+	.	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
Ledus.S5	AUGUSTUS	stop_codon	10159019	10159021	.	+	0	transcript_id "Ledus.S5G102700.t1"; gene_id "Ledus.S5G102700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1560.t1 is derived from g8421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10933501	10935662	.	-	.	Ledus.S2G144200
Ledus.S2	AUGUSTUS	transcript	10933501	10935662	.	-	.	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	stop_codon	10933498	10933500	.	-	0	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	CDS	10933501	10933527	1	-	0	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	exon	10933501	10933527	.	-	.	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	intron	10933528	10933718	.	-	.	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	CDS	10933719	10933747	1	-	2	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	exon	10933719	10933747	.	-	.	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	intron	10933748	10933945	.	-	.	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	CDS	10933946	10934003	0.98	-	0	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	exon	10933946	10934003	.	-	.	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	intron	10934004	10934167	.	-	.	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	CDS	10934168	10935540	0.98	-	2	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	exon	10934168	10935540	.	-	.	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	intron	10935541	10935622	.	-	.	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	CDS	10935623	10935662	0.83	-	0	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	exon	10935623	10935662	.	-	.	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
Ledus.S2	AUGUSTUS	start_codon	10935660	10935662	.	-	0	transcript_id "Ledus.S2G144200.t1"; gene_id "Ledus.S2G144200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10308.t1 is derived from g11338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14172859	14173452	.	+	.	Ledus.S3G178500
Ledus.S3	AUGUSTUS	transcript	14172859	14173452	.	+	.	transcript_id "Ledus.S3G178500.t1"; gene_id "Ledus.S3G178500"
Ledus.S3	AUGUSTUS	start_codon	14172859	14172861	.	+	0	transcript_id "Ledus.S3G178500.t1"; gene_id "Ledus.S3G178500"
Ledus.S3	AUGUSTUS	CDS	14172859	14173452	0.67	+	0	transcript_id "Ledus.S3G178500.t1"; gene_id "Ledus.S3G178500"
Ledus.S3	AUGUSTUS	exon	14172859	14173452	.	+	.	transcript_id "Ledus.S3G178500.t1"; gene_id "Ledus.S3G178500"
Ledus.S3	AUGUSTUS	stop_codon	14173453	14173455	.	+	0	transcript_id "Ledus.S3G178500.t1"; gene_id "Ledus.S3G178500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9134.t1 is derived from g10164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4748799	4749008	.	-	.	Ledus.S3G061100
Ledus.S3	AUGUSTUS	transcript	4748799	4749008	.	-	.	transcript_id "Ledus.S3G061100.t1"; gene_id "Ledus.S3G061100"
Ledus.S3	AUGUSTUS	stop_codon	4748796	4748798	.	-	0	transcript_id "Ledus.S3G061100.t1"; gene_id "Ledus.S3G061100"
Ledus.S3	AUGUSTUS	CDS	4748799	4749008	0.83	-	0	transcript_id "Ledus.S3G061100.t1"; gene_id "Ledus.S3G061100"
Ledus.S3	AUGUSTUS	exon	4748799	4749008	.	-	.	transcript_id "Ledus.S3G061100.t1"; gene_id "Ledus.S3G061100"
Ledus.S3	AUGUSTUS	start_codon	4749006	4749008	.	-	0	transcript_id "Ledus.S3G061100.t1"; gene_id "Ledus.S3G061100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4199.t1 is derived from g1635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15342204	15344108	.	+	.	Ledus.S1G162000
Ledus.S1	AUGUSTUS	transcript	15342204	15344108	.	+	.	transcript_id "Ledus.S1G162000.t1"; gene_id "Ledus.S1G162000"
Ledus.S1	AUGUSTUS	start_codon	15342204	15342206	.	+	0	transcript_id "Ledus.S1G162000.t1"; gene_id "Ledus.S1G162000"
Ledus.S1	AUGUSTUS	CDS	15342204	15344108	0.73	+	0	transcript_id "Ledus.S1G162000.t1"; gene_id "Ledus.S1G162000"
Ledus.S1	AUGUSTUS	exon	15342204	15344108	.	+	.	transcript_id "Ledus.S1G162000.t1"; gene_id "Ledus.S1G162000"
Ledus.S1	AUGUSTUS	stop_codon	15344109	15344111	.	+	0	transcript_id "Ledus.S1G162000.t1"; gene_id "Ledus.S1G162000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6810.t1 is derived from g4254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34401628	34403834	.	-	.	Ledus.S1G423100
Ledus.S1	AUGUSTUS	transcript	34401628	34403834	.	-	.	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	stop_codon	34401625	34401627	.	-	0	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	CDS	34401628	34402371	1	-	0	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	exon	34401628	34402371	.	-	.	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	intron	34402372	34402470	.	-	.	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	CDS	34402471	34402581	1	-	0	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	exon	34402471	34402581	.	-	.	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	intron	34402582	34402677	.	-	.	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	CDS	34402678	34402966	1	-	1	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	exon	34402678	34402966	.	-	.	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	intron	34402967	34403058	.	-	.	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	CDS	34403059	34403406	1	-	1	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	exon	34403059	34403406	.	-	.	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	intron	34403407	34403488	.	-	.	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	CDS	34403489	34403646	1	-	0	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	exon	34403489	34403646	.	-	.	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	intron	34403647	34403729	.	-	.	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	CDS	34403730	34403834	0.61	-	0	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	exon	34403730	34403834	.	-	.	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
Ledus.S1	AUGUSTUS	start_codon	34403832	34403834	.	-	0	transcript_id "Ledus.S1G423100.t1"; gene_id "Ledus.S1G423100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3714.t1 is derived from g1150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11120062	11121837	.	+	.	Ledus.S1G113500
Ledus.S1	AUGUSTUS	transcript	11120062	11121837	.	+	.	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	start_codon	11120062	11120064	.	+	0	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	CDS	11120062	11120110	1	+	0	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	exon	11120062	11120110	.	+	.	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	intron	11120111	11120551	.	+	.	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	CDS	11120552	11120619	1	+	2	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	exon	11120552	11120619	.	+	.	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	intron	11120620	11120733	.	+	.	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	CDS	11120734	11120844	1	+	0	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	exon	11120734	11120844	.	+	.	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	intron	11120845	11120952	.	+	.	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	CDS	11120953	11121039	1	+	0	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	exon	11120953	11121039	.	+	.	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	intron	11121040	11121221	.	+	.	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	CDS	11121222	11121430	0.73	+	0	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	exon	11121222	11121430	.	+	.	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	intron	11121431	11121533	.	+	.	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	CDS	11121534	11121837	1	+	1	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	exon	11121534	11121837	.	+	.	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
Ledus.S1	AUGUSTUS	stop_codon	11121838	11121840	.	+	0	transcript_id "Ledus.S1G113500.t1"; gene_id "Ledus.S1G113500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1270.t1 is derived from g8131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8999950	9001938	.	+	.	Ledus.S2G115200
Ledus.S2	AUGUSTUS	transcript	8999950	9001938	.	+	.	transcript_id "Ledus.S2G115200.t1"; gene_id "Ledus.S2G115200"
Ledus.S2	AUGUSTUS	start_codon	8999950	8999952	.	+	0	transcript_id "Ledus.S2G115200.t1"; gene_id "Ledus.S2G115200"
Ledus.S2	AUGUSTUS	CDS	8999950	9001938	1	+	0	transcript_id "Ledus.S2G115200.t1"; gene_id "Ledus.S2G115200"
Ledus.S2	AUGUSTUS	exon	8999950	9001938	.	+	.	transcript_id "Ledus.S2G115200.t1"; gene_id "Ledus.S2G115200"
Ledus.S2	AUGUSTUS	stop_codon	9001939	9001941	.	+	0	transcript_id "Ledus.S2G115200.t1"; gene_id "Ledus.S2G115200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9567.t1 is derived from g10597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7851727	7852338	.	-	.	Ledus.S3G104400
Ledus.S3	AUGUSTUS	transcript	7851727	7852338	.	-	.	transcript_id "Ledus.S3G104400.t1"; gene_id "Ledus.S3G104400"
Ledus.S3	AUGUSTUS	stop_codon	7851724	7851726	.	-	0	transcript_id "Ledus.S3G104400.t1"; gene_id "Ledus.S3G104400"
Ledus.S3	AUGUSTUS	CDS	7851727	7852338	0.98	-	0	transcript_id "Ledus.S3G104400.t1"; gene_id "Ledus.S3G104400"
Ledus.S3	AUGUSTUS	exon	7851727	7852338	.	-	.	transcript_id "Ledus.S3G104400.t1"; gene_id "Ledus.S3G104400"
Ledus.S3	AUGUSTUS	start_codon	7852336	7852338	.	-	0	transcript_id "Ledus.S3G104400.t1"; gene_id "Ledus.S3G104400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg528.t1 is derived from g7389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3055588	3057600	.	+	.	Ledus.S2G041000
Ledus.S2	AUGUSTUS	transcript	3055588	3057600	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	start_codon	3055588	3055590	.	+	0	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	CDS	3055588	3055656	1	+	0	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	exon	3055588	3055656	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	intron	3055657	3055729	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	CDS	3055730	3055816	1	+	0	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	exon	3055730	3055816	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	intron	3055817	3055965	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	CDS	3055966	3056036	1	+	0	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	exon	3055966	3056036	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	intron	3056037	3056127	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	CDS	3056128	3056192	1	+	1	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	exon	3056128	3056192	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	intron	3056193	3056333	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	CDS	3056334	3056449	1	+	2	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	exon	3056334	3056449	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	intron	3056450	3056673	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	CDS	3056674	3056817	1	+	0	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	exon	3056674	3056817	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	intron	3056818	3056947	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	CDS	3056948	3057034	1	+	0	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	exon	3056948	3057034	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	intron	3057035	3057119	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	CDS	3057120	3057200	1	+	0	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	exon	3057120	3057200	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	intron	3057201	3057346	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	CDS	3057347	3057427	1	+	0	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	exon	3057347	3057427	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	intron	3057428	3057525	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	CDS	3057526	3057600	1	+	0	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	exon	3057526	3057600	.	+	.	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
Ledus.S2	AUGUSTUS	stop_codon	3057601	3057603	.	+	0	transcript_id "Ledus.S2G041000.t1"; gene_id "Ledus.S2G041000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10021.t1 is derived from g11051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11920364	11920975	.	+	.	Ledus.S3G149800
Ledus.S3	AUGUSTUS	transcript	11920364	11920975	.	+	.	transcript_id "Ledus.S3G149800.t1"; gene_id "Ledus.S3G149800"
Ledus.S3	AUGUSTUS	start_codon	11920364	11920366	.	+	0	transcript_id "Ledus.S3G149800.t1"; gene_id "Ledus.S3G149800"
Ledus.S3	AUGUSTUS	CDS	11920364	11920410	0.53	+	0	transcript_id "Ledus.S3G149800.t1"; gene_id "Ledus.S3G149800"
Ledus.S3	AUGUSTUS	exon	11920364	11920410	.	+	.	transcript_id "Ledus.S3G149800.t1"; gene_id "Ledus.S3G149800"
Ledus.S3	AUGUSTUS	intron	11920411	11920538	.	+	.	transcript_id "Ledus.S3G149800.t1"; gene_id "Ledus.S3G149800"
Ledus.S3	AUGUSTUS	CDS	11920539	11920639	0.46	+	1	transcript_id "Ledus.S3G149800.t1"; gene_id "Ledus.S3G149800"
Ledus.S3	AUGUSTUS	exon	11920539	11920639	.	+	.	transcript_id "Ledus.S3G149800.t1"; gene_id "Ledus.S3G149800"
Ledus.S3	AUGUSTUS	intron	11920640	11920838	.	+	.	transcript_id "Ledus.S3G149800.t1"; gene_id "Ledus.S3G149800"
Ledus.S3	AUGUSTUS	CDS	11920839	11920975	0.82	+	2	transcript_id "Ledus.S3G149800.t1"; gene_id "Ledus.S3G149800"
Ledus.S3	AUGUSTUS	exon	11920839	11920975	.	+	.	transcript_id "Ledus.S3G149800.t1"; gene_id "Ledus.S3G149800"
Ledus.S3	AUGUSTUS	stop_codon	11920976	11920978	.	+	0	transcript_id "Ledus.S3G149800.t1"; gene_id "Ledus.S3G149800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg225.t1 is derived from g7086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	997593	999824	.	-	.	Ledus.S2G010700
Ledus.S2	AUGUSTUS	transcript	997593	999824	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	stop_codon	997590	997592	.	-	0	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	CDS	997593	997671	0.99	-	1	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	exon	997593	997671	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	intron	997672	997775	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	CDS	997776	997840	0.99	-	0	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	exon	997776	997840	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	intron	997841	997970	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	CDS	997971	998039	1	-	0	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	exon	997971	998039	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	intron	998040	998220	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	CDS	998221	998312	1	-	2	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	exon	998221	998312	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	intron	998313	998408	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	CDS	998409	998877	0.89	-	0	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	exon	998409	998877	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	intron	998878	998955	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	CDS	998956	999078	0.61	-	0	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	exon	998956	999078	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	intron	999079	999187	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	CDS	999188	999306	0.6	-	2	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	exon	999188	999306	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	intron	999307	999383	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	CDS	999384	999477	1	-	0	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	exon	999384	999477	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	intron	999478	999553	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	CDS	999554	999664	1	-	0	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	exon	999554	999664	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	intron	999665	999749	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	CDS	999750	999824	1	-	0	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	exon	999750	999824	.	-	.	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
Ledus.S2	AUGUSTUS	start_codon	999822	999824	.	-	0	transcript_id "Ledus.S2G010700.t1"; gene_id "Ledus.S2G010700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5428.t1 is derived from g2867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24117447	24118244	.	-	.	Ledus.S1G284900
Ledus.S1	AUGUSTUS	transcript	24117447	24118244	.	-	.	transcript_id "Ledus.S1G284900.t1"; gene_id "Ledus.S1G284900"
Ledus.S1	AUGUSTUS	stop_codon	24117444	24117446	.	-	0	transcript_id "Ledus.S1G284900.t1"; gene_id "Ledus.S1G284900"
Ledus.S1	AUGUSTUS	CDS	24117447	24117496	0.05	-	2	transcript_id "Ledus.S1G284900.t1"; gene_id "Ledus.S1G284900"
Ledus.S1	AUGUSTUS	exon	24117447	24117496	.	-	.	transcript_id "Ledus.S1G284900.t1"; gene_id "Ledus.S1G284900"
Ledus.S1	AUGUSTUS	intron	24117497	24117808	.	-	.	transcript_id "Ledus.S1G284900.t1"; gene_id "Ledus.S1G284900"
Ledus.S1	AUGUSTUS	CDS	24117809	24118244	0.1	-	0	transcript_id "Ledus.S1G284900.t1"; gene_id "Ledus.S1G284900"
Ledus.S1	AUGUSTUS	exon	24117809	24118244	.	-	.	transcript_id "Ledus.S1G284900.t1"; gene_id "Ledus.S1G284900"
Ledus.S1	AUGUSTUS	start_codon	24118242	24118244	.	-	0	transcript_id "Ledus.S1G284900.t1"; gene_id "Ledus.S1G284900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3044.t1 is derived from g479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5483835	5485004	.	-	.	Ledus.S1G046500
Ledus.S1	AUGUSTUS	transcript	5483835	5485004	.	-	.	transcript_id "Ledus.S1G046500.t1"; gene_id "Ledus.S1G046500"
Ledus.S1	AUGUSTUS	stop_codon	5483832	5483834	.	-	0	transcript_id "Ledus.S1G046500.t1"; gene_id "Ledus.S1G046500"
Ledus.S1	AUGUSTUS	CDS	5483835	5484226	1	-	2	transcript_id "Ledus.S1G046500.t1"; gene_id "Ledus.S1G046500"
Ledus.S1	AUGUSTUS	exon	5483835	5484226	.	-	.	transcript_id "Ledus.S1G046500.t1"; gene_id "Ledus.S1G046500"
Ledus.S1	AUGUSTUS	intron	5484227	5484313	.	-	.	transcript_id "Ledus.S1G046500.t1"; gene_id "Ledus.S1G046500"
Ledus.S1	AUGUSTUS	CDS	5484314	5484451	1	-	2	transcript_id "Ledus.S1G046500.t1"; gene_id "Ledus.S1G046500"
Ledus.S1	AUGUSTUS	exon	5484314	5484451	.	-	.	transcript_id "Ledus.S1G046500.t1"; gene_id "Ledus.S1G046500"
Ledus.S1	AUGUSTUS	intron	5484452	5484532	.	-	.	transcript_id "Ledus.S1G046500.t1"; gene_id "Ledus.S1G046500"
Ledus.S1	AUGUSTUS	CDS	5484533	5485004	0.88	-	0	transcript_id "Ledus.S1G046500.t1"; gene_id "Ledus.S1G046500"
Ledus.S1	AUGUSTUS	exon	5484533	5485004	.	-	.	transcript_id "Ledus.S1G046500.t1"; gene_id "Ledus.S1G046500"
Ledus.S1	AUGUSTUS	start_codon	5485002	5485004	.	-	0	transcript_id "Ledus.S1G046500.t1"; gene_id "Ledus.S1G046500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7368.t1 is derived from g12039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1608652	1609018	.	-	.	Ledus.S5G014600
Ledus.S5	AUGUSTUS	transcript	1608652	1609018	.	-	.	transcript_id "Ledus.S5G014600.t1"; gene_id "Ledus.S5G014600"
Ledus.S5	AUGUSTUS	stop_codon	1608649	1608651	.	-	0	transcript_id "Ledus.S5G014600.t1"; gene_id "Ledus.S5G014600"
Ledus.S5	AUGUSTUS	CDS	1608652	1608844	0.61	-	1	transcript_id "Ledus.S5G014600.t1"; gene_id "Ledus.S5G014600"
Ledus.S5	AUGUSTUS	exon	1608652	1608844	.	-	.	transcript_id "Ledus.S5G014600.t1"; gene_id "Ledus.S5G014600"
Ledus.S5	AUGUSTUS	intron	1608845	1608947	.	-	.	transcript_id "Ledus.S5G014600.t1"; gene_id "Ledus.S5G014600"
Ledus.S5	AUGUSTUS	CDS	1608948	1609018	0.4	-	0	transcript_id "Ledus.S5G014600.t1"; gene_id "Ledus.S5G014600"
Ledus.S5	AUGUSTUS	exon	1608948	1609018	.	-	.	transcript_id "Ledus.S5G014600.t1"; gene_id "Ledus.S5G014600"
Ledus.S5	AUGUSTUS	start_codon	1609016	1609018	.	-	0	transcript_id "Ledus.S5G014600.t1"; gene_id "Ledus.S5G014600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6604.t1 is derived from g4047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32622471	32623358	.	-	.	Ledus.S1G402500
Ledus.S1	AUGUSTUS	transcript	32622471	32622842	.	-	.	transcript_id "Ledus.S1G402500.t1"; gene_id "Ledus.S1G402500"
Ledus.S1	AUGUSTUS	stop_codon	32622468	32622470	.	-	0	transcript_id "Ledus.S1G402500.t1"; gene_id "Ledus.S1G402500"
Ledus.S1	AUGUSTUS	CDS	32622471	32622842	0.99	-	0	transcript_id "Ledus.S1G402500.t1"; gene_id "Ledus.S1G402500"
Ledus.S1	AUGUSTUS	exon	32622471	32622842	.	-	.	transcript_id "Ledus.S1G402500.t1"; gene_id "Ledus.S1G402500"
Ledus.S1	AUGUSTUS	start_codon	32622840	32622842	.	-	0	transcript_id "Ledus.S1G402500.t1"; gene_id "Ledus.S1G402500"
Ledus.S1	AUGUSTUS	transcript	32622471	32623358	.	-	.	transcript_id "Ledus.S1G402500.t2"; gene_id "Ledus.S1G402500"
Ledus.S1	AUGUSTUS	stop_codon	32622468	32622470	.	-	0	transcript_id "Ledus.S1G402500.t2"; gene_id "Ledus.S1G402500"
Ledus.S1	AUGUSTUS	CDS	32622471	32623358	0.99	-	0	transcript_id "Ledus.S1G402500.t2"; gene_id "Ledus.S1G402500"
Ledus.S1	AUGUSTUS	exon	32622471	32623358	.	-	.	transcript_id "Ledus.S1G402500.t2"; gene_id "Ledus.S1G402500"
Ledus.S1	AUGUSTUS	start_codon	32623356	32623358	.	-	0	transcript_id "Ledus.S1G402500.t2"; gene_id "Ledus.S1G402500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7116.t1 is derived from g6647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1654765	1657220	.	+	.	Ledus.C7G017700
Ledus.C7	AUGUSTUS	transcript	1654765	1657220	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	start_codon	1654765	1654767	.	+	0	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1654765	1654807	1	+	0	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1654765	1654807	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	intron	1654808	1654906	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1654907	1654969	1	+	2	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1654907	1654969	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	intron	1654970	1655044	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1655045	1655215	1	+	2	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1655045	1655215	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	intron	1655216	1655346	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1655347	1655481	1	+	2	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1655347	1655481	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	intron	1655482	1655549	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1655550	1655689	1	+	2	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1655550	1655689	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	intron	1655690	1655779	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1655780	1655866	1	+	0	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1655780	1655866	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	intron	1655867	1655947	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1655948	1656073	1	+	0	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1655948	1656073	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	intron	1656074	1656163	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1656164	1656316	1	+	0	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1656164	1656316	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	intron	1656317	1656399	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1656400	1656471	1	+	0	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1656400	1656471	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	intron	1656472	1656540	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1656541	1656642	1	+	0	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1656541	1656642	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	intron	1656643	1656728	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1656729	1656899	1	+	0	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1656729	1656899	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	intron	1656900	1656986	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1656987	1657066	0.98	+	0	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1656987	1657066	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	intron	1657067	1657180	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	CDS	1657181	1657220	0.98	+	1	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	exon	1657181	1657220	.	+	.	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
Ledus.C7	AUGUSTUS	stop_codon	1657221	1657223	.	+	0	transcript_id "Ledus.C7G017700.t1"; gene_id "Ledus.C7G017700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13028.t1 is derived from g6838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3434557	3434856	.	-	.	Ledus.S6G009000
Ledus.S6	AUGUSTUS	transcript	3434557	3434856	.	-	.	transcript_id "Ledus.S6G009000.t1"; gene_id "Ledus.S6G009000"
Ledus.S6	AUGUSTUS	stop_codon	3434554	3434556	.	-	0	transcript_id "Ledus.S6G009000.t1"; gene_id "Ledus.S6G009000"
Ledus.S6	AUGUSTUS	CDS	3434557	3434856	0.64	-	0	transcript_id "Ledus.S6G009000.t1"; gene_id "Ledus.S6G009000"
Ledus.S6	AUGUSTUS	exon	3434557	3434856	.	-	.	transcript_id "Ledus.S6G009000.t1"; gene_id "Ledus.S6G009000"
Ledus.S6	AUGUSTUS	start_codon	3434854	3434856	.	-	0	transcript_id "Ledus.S6G009000.t1"; gene_id "Ledus.S6G009000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3895.t1 is derived from g1331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13468113	13468901	.	-	.	Ledus.S1G131600
Ledus.S1	AUGUSTUS	transcript	13468113	13468901	.	-	.	transcript_id "Ledus.S1G131600.t1"; gene_id "Ledus.S1G131600"
Ledus.S1	AUGUSTUS	stop_codon	13468110	13468112	.	-	0	transcript_id "Ledus.S1G131600.t1"; gene_id "Ledus.S1G131600"
Ledus.S1	AUGUSTUS	CDS	13468113	13468337	1	-	0	transcript_id "Ledus.S1G131600.t1"; gene_id "Ledus.S1G131600"
Ledus.S1	AUGUSTUS	exon	13468113	13468337	.	-	.	transcript_id "Ledus.S1G131600.t1"; gene_id "Ledus.S1G131600"
Ledus.S1	AUGUSTUS	intron	13468338	13468424	.	-	.	transcript_id "Ledus.S1G131600.t1"; gene_id "Ledus.S1G131600"
Ledus.S1	AUGUSTUS	CDS	13468425	13468560	1	-	1	transcript_id "Ledus.S1G131600.t1"; gene_id "Ledus.S1G131600"
Ledus.S1	AUGUSTUS	exon	13468425	13468560	.	-	.	transcript_id "Ledus.S1G131600.t1"; gene_id "Ledus.S1G131600"
Ledus.S1	AUGUSTUS	intron	13468561	13468635	.	-	.	transcript_id "Ledus.S1G131600.t1"; gene_id "Ledus.S1G131600"
Ledus.S1	AUGUSTUS	CDS	13468636	13468901	1	-	0	transcript_id "Ledus.S1G131600.t1"; gene_id "Ledus.S1G131600"
Ledus.S1	AUGUSTUS	exon	13468636	13468901	.	-	.	transcript_id "Ledus.S1G131600.t1"; gene_id "Ledus.S1G131600"
Ledus.S1	AUGUSTUS	start_codon	13468899	13468901	.	-	0	transcript_id "Ledus.S1G131600.t1"; gene_id "Ledus.S1G131600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6187.t1 is derived from g3630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29455182	29456944	.	-	.	Ledus.S1G360800
Ledus.S1	AUGUSTUS	transcript	29455182	29456944	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	stop_codon	29455179	29455181	.	-	0	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	CDS	29455182	29455414	0.78	-	2	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	exon	29455182	29455414	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	intron	29455415	29455516	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	CDS	29455517	29455621	0.91	-	2	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	exon	29455517	29455621	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	intron	29455622	29455737	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	CDS	29455738	29455867	0.92	-	0	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	exon	29455738	29455867	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	intron	29455868	29455969	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	CDS	29455970	29456037	1	-	2	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	exon	29455970	29456037	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	intron	29456038	29456182	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	CDS	29456183	29456254	1	-	2	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	exon	29456183	29456254	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	intron	29456255	29456401	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	CDS	29456402	29456509	0.95	-	2	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	exon	29456402	29456509	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	intron	29456510	29456619	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	CDS	29456620	29456725	0.97	-	0	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	exon	29456620	29456725	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	intron	29456726	29456908	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	CDS	29456909	29456944	1	-	0	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	exon	29456909	29456944	.	-	.	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
Ledus.S1	AUGUSTUS	start_codon	29456942	29456944	.	-	0	transcript_id "Ledus.S1G360800.t1"; gene_id "Ledus.S1G360800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10427.t1 is derived from g11457.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15075560	15079979	.	+	.	Ledus.S3G190400
Ledus.S3	AUGUSTUS	transcript	15075560	15079979	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	start_codon	15075560	15075562	.	+	0	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15075560	15075799	0.45	+	0	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15075560	15075799	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	intron	15075800	15077546	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15077547	15078821	0.7	+	0	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15077547	15078821	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	intron	15078822	15078886	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15078887	15078944	0.81	+	0	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15078887	15078944	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	intron	15078945	15079109	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15079110	15079212	0.8	+	2	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15079110	15079212	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	intron	15079213	15079329	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15079330	15079465	0.74	+	1	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15079330	15079465	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	intron	15079466	15079589	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15079590	15079718	0.97	+	0	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15079590	15079718	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	intron	15079719	15079805	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15079806	15079979	0.77	+	0	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15079806	15079979	.	+	.	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	stop_codon	15079980	15079982	.	+	0	transcript_id "Ledus.S3G190400.t1"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	transcript	15075560	15079979	.	+	.	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	start_codon	15075560	15075562	.	+	0	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15075560	15075799	0.53	+	0	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15075560	15075799	.	+	.	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	intron	15075800	15077546	.	+	.	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15077547	15079005	0.74	+	0	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15077547	15079005	.	+	.	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	intron	15079006	15079109	.	+	.	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15079110	15079212	0.8	+	2	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15079110	15079212	.	+	.	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	intron	15079213	15079329	.	+	.	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15079330	15079465	0.53	+	1	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15079330	15079465	.	+	.	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	intron	15079466	15079589	.	+	.	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15079590	15079718	0.97	+	0	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15079590	15079718	.	+	.	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	intron	15079719	15079805	.	+	.	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	CDS	15079806	15079979	0.84	+	0	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	exon	15079806	15079979	.	+	.	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
Ledus.S3	AUGUSTUS	stop_codon	15079980	15079982	.	+	0	transcript_id "Ledus.S3G190400.t2"; gene_id "Ledus.S3G190400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11407.t1 is derived from g5025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4045964	4049306	.	-	.	Ledus.S4G056300
Ledus.S4	AUGUSTUS	transcript	4045964	4049306	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	stop_codon	4045961	4045963	.	-	0	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	CDS	4045964	4046070	0.53	-	2	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	exon	4045964	4046070	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	intron	4046071	4046260	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	CDS	4046261	4046390	0.85	-	0	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	exon	4046261	4046390	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	intron	4046391	4046503	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	CDS	4046504	4046653	1	-	0	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	exon	4046504	4046653	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	intron	4046654	4046736	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	CDS	4046737	4046970	0.91	-	0	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	exon	4046737	4046970	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	intron	4046971	4047077	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	CDS	4047078	4047252	1	-	1	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	exon	4047078	4047252	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	intron	4047253	4047406	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	CDS	4047407	4047628	1	-	1	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	exon	4047407	4047628	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	intron	4047629	4047763	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	CDS	4047764	4047930	1	-	0	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	exon	4047764	4047930	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	intron	4047931	4048079	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	CDS	4048080	4048218	1	-	1	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	exon	4048080	4048218	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	intron	4048219	4048342	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	CDS	4048343	4049021	0.94	-	2	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	exon	4048343	4049021	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	intron	4049022	4049128	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	CDS	4049129	4049306	1	-	0	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	exon	4049129	4049306	.	-	.	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
Ledus.S4	AUGUSTUS	start_codon	4049304	4049306	.	-	0	transcript_id "Ledus.S4G056300.t1"; gene_id "Ledus.S4G056300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2932.t1 is derived from g367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4641108	4641480	.	+	.	Ledus.S1G035300
Ledus.S1	AUGUSTUS	transcript	4641108	4641480	.	+	.	transcript_id "Ledus.S1G035300.t1"; gene_id "Ledus.S1G035300"
Ledus.S1	AUGUSTUS	start_codon	4641108	4641110	.	+	0	transcript_id "Ledus.S1G035300.t1"; gene_id "Ledus.S1G035300"
Ledus.S1	AUGUSTUS	CDS	4641108	4641170	0.49	+	0	transcript_id "Ledus.S1G035300.t1"; gene_id "Ledus.S1G035300"
Ledus.S1	AUGUSTUS	exon	4641108	4641170	.	+	.	transcript_id "Ledus.S1G035300.t1"; gene_id "Ledus.S1G035300"
Ledus.S1	AUGUSTUS	intron	4641171	4641246	.	+	.	transcript_id "Ledus.S1G035300.t1"; gene_id "Ledus.S1G035300"
Ledus.S1	AUGUSTUS	CDS	4641247	4641480	0.73	+	0	transcript_id "Ledus.S1G035300.t1"; gene_id "Ledus.S1G035300"
Ledus.S1	AUGUSTUS	exon	4641247	4641480	.	+	.	transcript_id "Ledus.S1G035300.t1"; gene_id "Ledus.S1G035300"
Ledus.S1	AUGUSTUS	stop_codon	4641481	4641483	.	+	0	transcript_id "Ledus.S1G035300.t1"; gene_id "Ledus.S1G035300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9152.t1 is derived from g10182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4898031	4899605	.	+	.	Ledus.S3G062900
Ledus.S3	AUGUSTUS	transcript	4898031	4899605	.	+	.	transcript_id "Ledus.S3G062900.t1"; gene_id "Ledus.S3G062900"
Ledus.S3	AUGUSTUS	start_codon	4898031	4898033	.	+	0	transcript_id "Ledus.S3G062900.t1"; gene_id "Ledus.S3G062900"
Ledus.S3	AUGUSTUS	CDS	4898031	4899605	0.88	+	0	transcript_id "Ledus.S3G062900.t1"; gene_id "Ledus.S3G062900"
Ledus.S3	AUGUSTUS	exon	4898031	4899605	.	+	.	transcript_id "Ledus.S3G062900.t1"; gene_id "Ledus.S3G062900"
Ledus.S3	AUGUSTUS	stop_codon	4899606	4899608	.	+	0	transcript_id "Ledus.S3G062900.t1"; gene_id "Ledus.S3G062900"
Ledus.S3	AUGUSTUS	transcript	4898151	4899605	.	+	.	transcript_id "Ledus.S3G062900.t2"; gene_id "Ledus.S3G062900"
Ledus.S3	AUGUSTUS	start_codon	4898151	4898153	.	+	0	transcript_id "Ledus.S3G062900.t2"; gene_id "Ledus.S3G062900"
Ledus.S3	AUGUSTUS	CDS	4898151	4899605	0.59	+	0	transcript_id "Ledus.S3G062900.t2"; gene_id "Ledus.S3G062900"
Ledus.S3	AUGUSTUS	exon	4898151	4899605	.	+	.	transcript_id "Ledus.S3G062900.t2"; gene_id "Ledus.S3G062900"
Ledus.S3	AUGUSTUS	stop_codon	4899606	4899608	.	+	0	transcript_id "Ledus.S3G062900.t2"; gene_id "Ledus.S3G062900"
# This transcript jg7334.t2 is derived from g12005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7335.t1 is derived from g12006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1247517	1250664	.	+	.	Ledus.S5G011300
Ledus.S5	AUGUSTUS	transcript	1247517	1250664	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	start_codon	1247517	1247519	.	+	0	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	CDS	1247517	1247648	0.79	+	0	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	exon	1247517	1247648	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	intron	1247649	1247803	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	CDS	1247804	1248361	0.82	+	0	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	exon	1247804	1248361	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	intron	1248362	1248535	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	CDS	1248536	1248626	1	+	0	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	exon	1248536	1248626	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	intron	1248627	1248719	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	CDS	1248720	1248946	1	+	2	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	exon	1248720	1248946	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	intron	1248947	1249068	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	CDS	1249069	1249144	1	+	0	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	exon	1249069	1249144	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	intron	1249145	1249273	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	CDS	1249274	1249399	1	+	2	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	exon	1249274	1249399	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	intron	1249400	1249490	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	CDS	1249491	1250020	0.95	+	2	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	exon	1249491	1250020	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	intron	1250021	1250137	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	CDS	1250138	1250270	0.96	+	0	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	exon	1250138	1250270	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	intron	1250271	1250352	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	CDS	1250353	1250445	0.99	+	2	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	exon	1250353	1250445	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	intron	1250446	1250536	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	CDS	1250537	1250664	0.98	+	2	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	exon	1250537	1250664	.	+	.	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
Ledus.S5	AUGUSTUS	stop_codon	1250665	1250667	.	+	0	transcript_id "Ledus.S5G011300.t1"; gene_id "Ledus.S5G011300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1038.t1 is derived from g7899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6901933	6902498	.	-	.	Ledus.S2G092000
Ledus.S2	AUGUSTUS	transcript	6901933	6902498	.	-	.	transcript_id "Ledus.S2G092000.t1"; gene_id "Ledus.S2G092000"
Ledus.S2	AUGUSTUS	stop_codon	6901930	6901932	.	-	0	transcript_id "Ledus.S2G092000.t1"; gene_id "Ledus.S2G092000"
Ledus.S2	AUGUSTUS	CDS	6901933	6901990	0.73	-	1	transcript_id "Ledus.S2G092000.t1"; gene_id "Ledus.S2G092000"
Ledus.S2	AUGUSTUS	exon	6901933	6901990	.	-	.	transcript_id "Ledus.S2G092000.t1"; gene_id "Ledus.S2G092000"
Ledus.S2	AUGUSTUS	intron	6901991	6902077	.	-	.	transcript_id "Ledus.S2G092000.t1"; gene_id "Ledus.S2G092000"
Ledus.S2	AUGUSTUS	CDS	6902078	6902124	1	-	0	transcript_id "Ledus.S2G092000.t1"; gene_id "Ledus.S2G092000"
Ledus.S2	AUGUSTUS	exon	6902078	6902124	.	-	.	transcript_id "Ledus.S2G092000.t1"; gene_id "Ledus.S2G092000"
Ledus.S2	AUGUSTUS	intron	6902125	6902234	.	-	.	transcript_id "Ledus.S2G092000.t1"; gene_id "Ledus.S2G092000"
Ledus.S2	AUGUSTUS	CDS	6902235	6902498	0.95	-	0	transcript_id "Ledus.S2G092000.t1"; gene_id "Ledus.S2G092000"
Ledus.S2	AUGUSTUS	exon	6902235	6902498	.	-	.	transcript_id "Ledus.S2G092000.t1"; gene_id "Ledus.S2G092000"
Ledus.S2	AUGUSTUS	start_codon	6902496	6902498	.	-	0	transcript_id "Ledus.S2G092000.t1"; gene_id "Ledus.S2G092000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8654.t1 is derived from g9684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1155885	1157251	.	+	.	Ledus.S3G013100
Ledus.S3	AUGUSTUS	transcript	1155885	1157251	.	+	.	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	start_codon	1155885	1155887	.	+	0	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	CDS	1155885	1155991	0.42	+	0	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	exon	1155885	1155991	.	+	.	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	intron	1155992	1156049	.	+	.	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	CDS	1156050	1156137	0.64	+	1	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	exon	1156050	1156137	.	+	.	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	intron	1156138	1156333	.	+	.	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	CDS	1156334	1156462	0.92	+	0	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	exon	1156334	1156462	.	+	.	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	intron	1156463	1156564	.	+	.	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	CDS	1156565	1156749	0.76	+	0	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	exon	1156565	1156749	.	+	.	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	intron	1156750	1156899	.	+	.	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	CDS	1156900	1157251	0.97	+	1	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	exon	1156900	1157251	.	+	.	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
Ledus.S3	AUGUSTUS	stop_codon	1157252	1157254	.	+	0	transcript_id "Ledus.S3G013100.t1"; gene_id "Ledus.S3G013100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3181.t1 is derived from g616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6615339	6616630	.	+	.	Ledus.S1G060200
Ledus.S1	AUGUSTUS	transcript	6615339	6616630	.	+	.	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	start_codon	6615339	6615341	.	+	0	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	CDS	6615339	6615411	0.35	+	0	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	exon	6615339	6615411	.	+	.	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	intron	6615412	6615648	.	+	.	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	CDS	6615649	6615723	0.9	+	2	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	exon	6615649	6615723	.	+	.	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	intron	6615724	6615876	.	+	.	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	CDS	6615877	6616034	0.56	+	2	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	exon	6615877	6616034	.	+	.	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	intron	6616035	6616257	.	+	.	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	CDS	6616258	6616369	0.56	+	0	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	exon	6616258	6616369	.	+	.	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	intron	6616370	6616499	.	+	.	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	CDS	6616500	6616630	0.56	+	2	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	exon	6616500	6616630	.	+	.	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
Ledus.S1	AUGUSTUS	stop_codon	6616631	6616633	.	+	0	transcript_id "Ledus.S1G060200.t1"; gene_id "Ledus.S1G060200"
# This transcript jg6679.t2 is derived from g4122.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6680.t1 is derived from g4123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33167185	33168579	.	-	.	Ledus.S1G410100
Ledus.S1	AUGUSTUS	transcript	33167185	33168579	.	-	.	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	stop_codon	33167182	33167184	.	-	0	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	CDS	33167185	33167338	0.99	-	1	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	exon	33167185	33167338	.	-	.	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	intron	33167339	33167423	.	-	.	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	CDS	33167424	33167575	1	-	0	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	exon	33167424	33167575	.	-	.	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	intron	33167576	33167664	.	-	.	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	CDS	33167665	33167820	1	-	0	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	exon	33167665	33167820	.	-	.	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	intron	33167821	33167924	.	-	.	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	CDS	33167925	33168207	0.99	-	1	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	exon	33167925	33168207	.	-	.	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	intron	33168208	33168323	.	-	.	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	CDS	33168324	33168429	0.47	-	2	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	exon	33168324	33168429	.	-	.	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	intron	33168430	33168533	.	-	.	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	CDS	33168534	33168579	0.47	-	0	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	exon	33168534	33168579	.	-	.	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
Ledus.S1	AUGUSTUS	start_codon	33168577	33168579	.	-	0	transcript_id "Ledus.S1G410100.t1"; gene_id "Ledus.S1G410100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4903.t1 is derived from g2341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20590711	20591356	.	-	.	Ledus.S1G232400
Ledus.S1	AUGUSTUS	transcript	20590711	20591356	.	-	.	transcript_id "Ledus.S1G232400.t1"; gene_id "Ledus.S1G232400"
Ledus.S1	AUGUSTUS	stop_codon	20590708	20590710	.	-	0	transcript_id "Ledus.S1G232400.t1"; gene_id "Ledus.S1G232400"
Ledus.S1	AUGUSTUS	CDS	20590711	20590944	0.5	-	0	transcript_id "Ledus.S1G232400.t1"; gene_id "Ledus.S1G232400"
Ledus.S1	AUGUSTUS	exon	20590711	20590944	.	-	.	transcript_id "Ledus.S1G232400.t1"; gene_id "Ledus.S1G232400"
Ledus.S1	AUGUSTUS	intron	20590945	20591020	.	-	.	transcript_id "Ledus.S1G232400.t1"; gene_id "Ledus.S1G232400"
Ledus.S1	AUGUSTUS	CDS	20591021	20591356	0.27	-	0	transcript_id "Ledus.S1G232400.t1"; gene_id "Ledus.S1G232400"
Ledus.S1	AUGUSTUS	exon	20591021	20591356	.	-	.	transcript_id "Ledus.S1G232400.t1"; gene_id "Ledus.S1G232400"
Ledus.S1	AUGUSTUS	start_codon	20591354	20591356	.	-	0	transcript_id "Ledus.S1G232400.t1"; gene_id "Ledus.S1G232400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4552.t1 is derived from g1989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17653989	17655893	.	-	.	Ledus.S1G197300
Ledus.S1	AUGUSTUS	transcript	17653989	17655893	.	-	.	transcript_id "Ledus.S1G197300.t1"; gene_id "Ledus.S1G197300"
Ledus.S1	AUGUSTUS	stop_codon	17653986	17653988	.	-	0	transcript_id "Ledus.S1G197300.t1"; gene_id "Ledus.S1G197300"
Ledus.S1	AUGUSTUS	CDS	17653989	17655893	0.65	-	0	transcript_id "Ledus.S1G197300.t1"; gene_id "Ledus.S1G197300"
Ledus.S1	AUGUSTUS	exon	17653989	17655893	.	-	.	transcript_id "Ledus.S1G197300.t1"; gene_id "Ledus.S1G197300"
Ledus.S1	AUGUSTUS	start_codon	17655891	17655893	.	-	0	transcript_id "Ledus.S1G197300.t1"; gene_id "Ledus.S1G197300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10080.t1 is derived from g11110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12551129	12554928	.	-	.	Ledus.S3G155700
Ledus.S3	AUGUSTUS	transcript	12551129	12554928	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	stop_codon	12551126	12551128	.	-	0	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	CDS	12551129	12551258	0.96	-	1	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	exon	12551129	12551258	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	intron	12551259	12551411	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	CDS	12551412	12551920	0.98	-	0	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	exon	12551412	12551920	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	intron	12551921	12552016	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	CDS	12552017	12552142	1	-	0	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	exon	12552017	12552142	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	intron	12552143	12552237	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	CDS	12552238	12552426	0.92	-	0	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	exon	12552238	12552426	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	intron	12552427	12552543	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	CDS	12552544	12552654	0.98	-	0	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	exon	12552544	12552654	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	intron	12552655	12552753	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	CDS	12552754	12552875	1	-	2	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	exon	12552754	12552875	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	intron	12552876	12553001	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	CDS	12553002	12553074	1	-	0	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	exon	12553002	12553074	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	intron	12553075	12553225	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	CDS	12553226	12553324	0.99	-	0	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	exon	12553226	12553324	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	intron	12553325	12553405	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	CDS	12553406	12553608	0.68	-	2	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	exon	12553406	12553608	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	intron	12553609	12553755	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	CDS	12553756	12553856	1	-	1	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	exon	12553756	12553856	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	intron	12553857	12554195	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	CDS	12554196	12554356	1	-	0	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	exon	12554196	12554356	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	intron	12554357	12554637	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	CDS	12554638	12554928	0.99	-	0	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	exon	12554638	12554928	.	-	.	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
Ledus.S3	AUGUSTUS	start_codon	12554926	12554928	.	-	0	transcript_id "Ledus.S3G155700.t1"; gene_id "Ledus.S3G155700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6950.t1 is derived from g6481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	133777	141150	.	+	.	Ledus.C7G001100
Ledus.C7	AUGUSTUS	transcript	133777	141150	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	start_codon	133777	133779	.	+	0	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	133777	133785	1	+	0	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	133777	133785	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	intron	133786	133921	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	133922	134041	0.87	+	0	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	133922	134041	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	intron	134042	134146	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	134147	134395	0.82	+	0	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	134147	134395	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	intron	134396	134514	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	134515	134601	0.97	+	0	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	134515	134601	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	intron	134602	134789	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	134790	134814	0.79	+	0	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	134790	134814	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	intron	134815	135050	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	135051	135117	1	+	2	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	135051	135117	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	intron	135118	135247	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	135248	136760	0.86	+	1	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	135248	136760	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	intron	136761	136917	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	136918	138429	0.92	+	0	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	136918	138429	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	intron	138430	138574	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	138575	139180	1	+	0	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	138575	139180	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	intron	139181	139279	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	139280	139581	1	+	0	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	139280	139581	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	intron	139582	139661	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	139662	140163	1	+	1	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	139662	140163	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	intron	140164	140260	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	140261	140824	0.87	+	0	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	140261	140824	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	intron	140825	140925	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	CDS	140926	141150	1	+	0	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	exon	140926	141150	.	+	.	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
Ledus.C7	AUGUSTUS	stop_codon	141151	141153	.	+	0	transcript_id "Ledus.C7G001100.t1"; gene_id "Ledus.C7G001100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2396.t1 is derived from g9259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17866178	17868915	.	-	.	Ledus.S2G227800
Ledus.S2	AUGUSTUS	transcript	17866178	17868915	.	-	.	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	stop_codon	17866175	17866177	.	-	0	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	CDS	17866178	17868314	0.95	-	1	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	exon	17866178	17868314	.	-	.	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	intron	17868315	17868424	.	-	.	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	CDS	17868425	17868618	0.92	-	0	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	exon	17868425	17868618	.	-	.	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	intron	17868619	17868688	.	-	.	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	CDS	17868689	17868768	1	-	2	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	exon	17868689	17868768	.	-	.	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	intron	17868769	17868851	.	-	.	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	CDS	17868852	17868915	0.42	-	0	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	exon	17868852	17868915	.	-	.	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
Ledus.S2	AUGUSTUS	start_codon	17868913	17868915	.	-	0	transcript_id "Ledus.S2G227800.t1"; gene_id "Ledus.S2G227800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg908.t1 is derived from g7769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6078108	6082206	.	+	.	Ledus.S2G079000
Ledus.S2	AUGUSTUS	transcript	6078108	6082206	.	+	.	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	start_codon	6078108	6078110	.	+	0	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	CDS	6078108	6078231	0.98	+	0	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	exon	6078108	6078231	.	+	.	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	intron	6078232	6078312	.	+	.	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	CDS	6078313	6078370	1	+	2	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	exon	6078313	6078370	.	+	.	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	intron	6078371	6078624	.	+	.	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	CDS	6078625	6078735	1	+	1	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	exon	6078625	6078735	.	+	.	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	intron	6078736	6078854	.	+	.	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	CDS	6078855	6082206	0.98	+	1	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	exon	6078855	6082206	.	+	.	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	stop_codon	6082207	6082209	.	+	0	transcript_id "Ledus.S2G079000.t1"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	transcript	6078108	6082206	.	+	.	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	start_codon	6078108	6078110	.	+	0	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	CDS	6078108	6078231	0.99	+	0	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	exon	6078108	6078231	.	+	.	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	intron	6078232	6078312	.	+	.	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	CDS	6078313	6078370	1	+	2	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	exon	6078313	6078370	.	+	.	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	intron	6078371	6078562	.	+	.	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	CDS	6078563	6078586	0.67	+	1	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	exon	6078563	6078586	.	+	.	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	intron	6078587	6078696	.	+	.	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	CDS	6078697	6078735	0.66	+	1	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	exon	6078697	6078735	.	+	.	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	intron	6078736	6078854	.	+	.	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	CDS	6078855	6082206	0.9	+	1	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	exon	6078855	6082206	.	+	.	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
Ledus.S2	AUGUSTUS	stop_codon	6082207	6082209	.	+	0	transcript_id "Ledus.S2G079000.t2"; gene_id "Ledus.S2G079000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5689.t1 is derived from g3128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25909650	25909880	.	-	.	Ledus.S1G311000
Ledus.S1	AUGUSTUS	transcript	25909650	25909880	.	-	.	transcript_id "Ledus.S1G311000.t1"; gene_id "Ledus.S1G311000"
Ledus.S1	AUGUSTUS	stop_codon	25909647	25909649	.	-	0	transcript_id "Ledus.S1G311000.t1"; gene_id "Ledus.S1G311000"
Ledus.S1	AUGUSTUS	CDS	25909650	25909880	0.77	-	0	transcript_id "Ledus.S1G311000.t1"; gene_id "Ledus.S1G311000"
Ledus.S1	AUGUSTUS	exon	25909650	25909880	.	-	.	transcript_id "Ledus.S1G311000.t1"; gene_id "Ledus.S1G311000"
Ledus.S1	AUGUSTUS	start_codon	25909878	25909880	.	-	0	transcript_id "Ledus.S1G311000.t1"; gene_id "Ledus.S1G311000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6490.t1 is derived from g3933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31600411	31605523	.	-	.	Ledus.S1G391100
Ledus.S1	AUGUSTUS	transcript	31600411	31605523	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	stop_codon	31600408	31600410	.	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31600411	31600602	0.97	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31600411	31600602	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31600603	31600690	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31600691	31600861	1	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31600691	31600861	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31600862	31600952	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31600953	31601021	1	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31600953	31601021	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31601022	31601113	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31601114	31601287	1	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31601114	31601287	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31601288	31601474	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31601475	31601606	1	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31601475	31601606	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31601607	31601736	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31601737	31601958	1	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31601737	31601958	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31601959	31602102	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31602103	31602240	1	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31602103	31602240	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31602241	31602392	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31602393	31602443	1	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31602393	31602443	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31602444	31602590	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31602591	31602746	1	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31602591	31602746	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31602747	31602846	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31602847	31603018	1	-	1	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31602847	31603018	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31603019	31603104	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31603105	31603355	0.98	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31603105	31603355	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31603356	31603462	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31603463	31603696	0.83	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31603463	31603696	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31603697	31603807	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31603808	31603915	0.85	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31603808	31603915	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31603916	31603999	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31604000	31604101	1	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31604000	31604101	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31604102	31604200	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31604201	31604401	1	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31604201	31604401	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31604402	31604501	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31604502	31604615	0.99	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31604502	31604615	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31604616	31604722	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31604723	31604773	1	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31604723	31604773	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31604774	31604857	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31604858	31604955	1	-	2	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31604858	31604955	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	intron	31604956	31605438	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	CDS	31605439	31605523	0.9	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	exon	31605439	31605523	.	-	.	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
Ledus.S1	AUGUSTUS	start_codon	31605521	31605523	.	-	0	transcript_id "Ledus.S1G391100.t1"; gene_id "Ledus.S1G391100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10737.t1 is derived from g11768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17413525	17416345	.	-	.	Ledus.S3G221400
Ledus.S3	AUGUSTUS	transcript	17413525	17416345	.	-	.	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	stop_codon	17413522	17413524	.	-	0	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	CDS	17413525	17413556	0.29	-	2	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	exon	17413525	17413556	.	-	.	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	intron	17413557	17413747	.	-	.	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	CDS	17413748	17414222	0.55	-	0	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	exon	17413748	17414222	.	-	.	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	intron	17414223	17414310	.	-	.	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	CDS	17414311	17414712	1	-	0	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	exon	17414311	17414712	.	-	.	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	intron	17414713	17414800	.	-	.	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	CDS	17414801	17415170	1	-	1	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	exon	17414801	17415170	.	-	.	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	intron	17415171	17416232	.	-	.	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	CDS	17416233	17416345	0.98	-	0	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	exon	17416233	17416345	.	-	.	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
Ledus.S3	AUGUSTUS	start_codon	17416343	17416345	.	-	0	transcript_id "Ledus.S3G221400.t1"; gene_id "Ledus.S3G221400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8483.t1 is derived from g13155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12148862	12151220	.	+	.	Ledus.S5G126100
Ledus.S5	AUGUSTUS	transcript	12148862	12151220	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	start_codon	12148862	12148864	.	+	0	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	CDS	12148862	12148976	0.93	+	0	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	exon	12148862	12148976	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	intron	12148977	12149094	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	CDS	12149095	12149375	0.96	+	2	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	exon	12149095	12149375	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	intron	12149376	12149451	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	CDS	12149452	12149598	1	+	0	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	exon	12149452	12149598	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	intron	12149599	12149684	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	CDS	12149685	12149749	1	+	0	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	exon	12149685	12149749	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	intron	12149750	12149906	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	CDS	12149907	12149976	1	+	1	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	exon	12149907	12149976	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	intron	12149977	12150157	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	CDS	12150158	12150385	0.97	+	0	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	exon	12150158	12150385	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	intron	12150386	12150556	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	CDS	12150557	12150700	0.97	+	0	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	exon	12150557	12150700	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	intron	12150701	12150811	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	CDS	12150812	12150947	0.63	+	0	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	exon	12150812	12150947	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	intron	12150948	12151017	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	CDS	12151018	12151220	0.88	+	2	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	exon	12151018	12151220	.	+	.	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
Ledus.S5	AUGUSTUS	stop_codon	12151221	12151223	.	+	0	transcript_id "Ledus.S5G126100.t1"; gene_id "Ledus.S5G126100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6888.t1 is derived from g4332.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34986715	34990003	.	+	.	Ledus.S1G430900
Ledus.S1	AUGUSTUS	transcript	34986715	34990003	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	start_codon	34986715	34986717	.	+	0	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	CDS	34986715	34986865	0.92	+	0	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	exon	34986715	34986865	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	intron	34986866	34986945	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	CDS	34986946	34987416	1	+	2	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	exon	34986946	34987416	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	intron	34987417	34987497	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	CDS	34987498	34987681	1	+	2	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	exon	34987498	34987681	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	intron	34987682	34987758	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	CDS	34987759	34987976	1	+	1	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	exon	34987759	34987976	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	intron	34987977	34988071	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	CDS	34988072	34988645	1	+	2	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	exon	34988072	34988645	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	intron	34988646	34988727	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	CDS	34988728	34989042	1	+	1	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	exon	34988728	34989042	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	intron	34989043	34989127	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	CDS	34989128	34989266	1	+	1	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	exon	34989128	34989266	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	intron	34989267	34989352	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	CDS	34989353	34989598	1	+	0	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	exon	34989353	34989598	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	intron	34989599	34989697	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	CDS	34989698	34990003	0.99	+	0	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	exon	34989698	34990003	.	+	.	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
Ledus.S1	AUGUSTUS	stop_codon	34990004	34990006	.	+	0	transcript_id "Ledus.S1G430900.t1"; gene_id "Ledus.S1G430900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11246.t1 is derived from g4864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2918815	2919974	.	-	.	Ledus.S4G040200
Ledus.S4	AUGUSTUS	transcript	2918815	2919974	.	-	.	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	stop_codon	2918812	2918814	.	-	0	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	CDS	2918815	2918870	0.77	-	2	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	exon	2918815	2918870	.	-	.	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	intron	2918871	2919027	.	-	.	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	CDS	2919028	2919071	0.98	-	1	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	exon	2919028	2919071	.	-	.	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	intron	2919072	2919551	.	-	.	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	CDS	2919552	2919579	0.82	-	2	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	exon	2919552	2919579	.	-	.	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	intron	2919580	2919696	.	-	.	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	CDS	2919697	2919763	0.82	-	0	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	exon	2919697	2919763	.	-	.	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	intron	2919764	2919923	.	-	.	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	CDS	2919924	2919974	0.9	-	0	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	exon	2919924	2919974	.	-	.	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
Ledus.S4	AUGUSTUS	start_codon	2919972	2919974	.	-	0	transcript_id "Ledus.S4G040200.t1"; gene_id "Ledus.S4G040200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5409.t1 is derived from g2848.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24022819	24023553	.	-	.	Ledus.S1G283000
Ledus.S1	AUGUSTUS	transcript	24022819	24023553	.	-	.	transcript_id "Ledus.S1G283000.t1"; gene_id "Ledus.S1G283000"
Ledus.S1	AUGUSTUS	stop_codon	24022816	24022818	.	-	0	transcript_id "Ledus.S1G283000.t1"; gene_id "Ledus.S1G283000"
Ledus.S1	AUGUSTUS	CDS	24022819	24023271	0.91	-	0	transcript_id "Ledus.S1G283000.t1"; gene_id "Ledus.S1G283000"
Ledus.S1	AUGUSTUS	exon	24022819	24023271	.	-	.	transcript_id "Ledus.S1G283000.t1"; gene_id "Ledus.S1G283000"
Ledus.S1	AUGUSTUS	intron	24023272	24023361	.	-	.	transcript_id "Ledus.S1G283000.t1"; gene_id "Ledus.S1G283000"
Ledus.S1	AUGUSTUS	CDS	24023362	24023553	1	-	0	transcript_id "Ledus.S1G283000.t1"; gene_id "Ledus.S1G283000"
Ledus.S1	AUGUSTUS	exon	24023362	24023553	.	-	.	transcript_id "Ledus.S1G283000.t1"; gene_id "Ledus.S1G283000"
Ledus.S1	AUGUSTUS	start_codon	24023551	24023553	.	-	0	transcript_id "Ledus.S1G283000.t1"; gene_id "Ledus.S1G283000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2926.t1 is derived from g361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4606654	4611109	.	+	.	Ledus.S1G034700
Ledus.S1	AUGUSTUS	transcript	4606654	4611109	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	start_codon	4606654	4606656	.	+	0	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	CDS	4606654	4606989	0.23	+	0	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	exon	4606654	4606989	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	intron	4606990	4607080	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	CDS	4607081	4607290	1	+	0	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	exon	4607081	4607290	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	intron	4607291	4607448	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	CDS	4607449	4607702	1	+	0	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	exon	4607449	4607702	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	intron	4607703	4607855	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	CDS	4607856	4608126	0.95	+	1	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	exon	4607856	4608126	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	intron	4608127	4608251	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	CDS	4608252	4608347	0.69	+	0	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	exon	4608252	4608347	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	intron	4608348	4608453	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	CDS	4608454	4608585	0.93	+	0	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	exon	4608454	4608585	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	intron	4608586	4608763	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	CDS	4608764	4610289	0.91	+	0	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	exon	4608764	4610289	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	intron	4610290	4610478	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	CDS	4610479	4610594	0.6	+	1	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	exon	4610479	4610594	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	intron	4610595	4610712	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	CDS	4610713	4610966	0.44	+	2	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	exon	4610713	4610966	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	intron	4610967	4611073	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	CDS	4611074	4611109	0.72	+	0	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	exon	4611074	4611109	.	+	.	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
Ledus.S1	AUGUSTUS	stop_codon	4611110	4611112	.	+	0	transcript_id "Ledus.S1G034700.t1"; gene_id "Ledus.S1G034700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13074.t1 is derived from g6884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5053141	5053407	.	+	.	Ledus.S6G013600
Ledus.S6	AUGUSTUS	transcript	5053141	5053407	.	+	.	transcript_id "Ledus.S6G013600.t1"; gene_id "Ledus.S6G013600"
Ledus.S6	AUGUSTUS	start_codon	5053141	5053143	.	+	0	transcript_id "Ledus.S6G013600.t1"; gene_id "Ledus.S6G013600"
Ledus.S6	AUGUSTUS	CDS	5053141	5053407	1	+	0	transcript_id "Ledus.S6G013600.t1"; gene_id "Ledus.S6G013600"
Ledus.S6	AUGUSTUS	exon	5053141	5053407	.	+	.	transcript_id "Ledus.S6G013600.t1"; gene_id "Ledus.S6G013600"
Ledus.S6	AUGUSTUS	stop_codon	5053408	5053410	.	+	0	transcript_id "Ledus.S6G013600.t1"; gene_id "Ledus.S6G013600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10250.t1 is derived from g11280.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13809401	13811137	.	+	.	Ledus.S3G172700
Ledus.S3	AUGUSTUS	transcript	13809401	13811137	.	+	.	transcript_id "Ledus.S3G172700.t1"; gene_id "Ledus.S3G172700"
Ledus.S3	AUGUSTUS	start_codon	13809401	13809403	.	+	0	transcript_id "Ledus.S3G172700.t1"; gene_id "Ledus.S3G172700"
Ledus.S3	AUGUSTUS	CDS	13809401	13811137	0.76	+	0	transcript_id "Ledus.S3G172700.t1"; gene_id "Ledus.S3G172700"
Ledus.S3	AUGUSTUS	exon	13809401	13811137	.	+	.	transcript_id "Ledus.S3G172700.t1"; gene_id "Ledus.S3G172700"
Ledus.S3	AUGUSTUS	stop_codon	13811138	13811140	.	+	0	transcript_id "Ledus.S3G172700.t1"; gene_id "Ledus.S3G172700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11900.t1 is derived from g5519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7595918	7597951	.	-	.	Ledus.S4G105600
Ledus.S4	AUGUSTUS	transcript	7595918	7597951	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	stop_codon	7595915	7595917	.	-	0	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	CDS	7595918	7596241	0.97	-	0	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	exon	7595918	7596241	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	intron	7596242	7596322	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	CDS	7596323	7596424	1	-	0	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	exon	7596323	7596424	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	intron	7596425	7596515	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	CDS	7596516	7596614	1	-	0	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	exon	7596516	7596614	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	intron	7596615	7596699	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	CDS	7596700	7596852	1	-	0	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	exon	7596700	7596852	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	intron	7596853	7596929	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	CDS	7596930	7597051	1	-	2	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	exon	7596930	7597051	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	intron	7597052	7597120	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	CDS	7597121	7597337	1	-	0	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	exon	7597121	7597337	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	intron	7597338	7597421	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	CDS	7597422	7597527	1	-	1	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	exon	7597422	7597527	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	intron	7597528	7597622	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	CDS	7597623	7597951	0.98	-	0	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	exon	7597623	7597951	.	-	.	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
Ledus.S4	AUGUSTUS	start_codon	7597949	7597951	.	-	0	transcript_id "Ledus.S4G105600.t1"; gene_id "Ledus.S4G105600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8627.t1 is derived from g9657.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	778282	778685	.	+	.	Ledus.S3G010400
Ledus.S3	AUGUSTUS	transcript	778282	778685	.	+	.	transcript_id "Ledus.S3G010400.t1"; gene_id "Ledus.S3G010400"
Ledus.S3	AUGUSTUS	start_codon	778282	778284	.	+	0	transcript_id "Ledus.S3G010400.t1"; gene_id "Ledus.S3G010400"
Ledus.S3	AUGUSTUS	CDS	778282	778344	0.78	+	0	transcript_id "Ledus.S3G010400.t1"; gene_id "Ledus.S3G010400"
Ledus.S3	AUGUSTUS	exon	778282	778344	.	+	.	transcript_id "Ledus.S3G010400.t1"; gene_id "Ledus.S3G010400"
Ledus.S3	AUGUSTUS	intron	778345	778421	.	+	.	transcript_id "Ledus.S3G010400.t1"; gene_id "Ledus.S3G010400"
Ledus.S3	AUGUSTUS	CDS	778422	778685	0.92	+	0	transcript_id "Ledus.S3G010400.t1"; gene_id "Ledus.S3G010400"
Ledus.S3	AUGUSTUS	exon	778422	778685	.	+	.	transcript_id "Ledus.S3G010400.t1"; gene_id "Ledus.S3G010400"
Ledus.S3	AUGUSTUS	stop_codon	778686	778688	.	+	0	transcript_id "Ledus.S3G010400.t1"; gene_id "Ledus.S3G010400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11846.t1 is derived from g5465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7285087	7287675	.	-	.	Ledus.S4G100200
Ledus.S4	AUGUSTUS	transcript	7285087	7287675	.	-	.	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	stop_codon	7285084	7285086	.	-	0	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	CDS	7285087	7285865	0.49	-	2	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	exon	7285087	7285865	.	-	.	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	intron	7285866	7286064	.	-	.	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	CDS	7286065	7286184	0.49	-	2	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	exon	7286065	7286184	.	-	.	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	intron	7286185	7286312	.	-	.	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	CDS	7286313	7286926	0.98	-	1	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	exon	7286313	7286926	.	-	.	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	intron	7286927	7287005	.	-	.	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	CDS	7287006	7287331	1	-	0	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	exon	7287006	7287331	.	-	.	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	intron	7287332	7287420	.	-	.	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	CDS	7287421	7287675	1	-	0	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	exon	7287421	7287675	.	-	.	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
Ledus.S4	AUGUSTUS	start_codon	7287673	7287675	.	-	0	transcript_id "Ledus.S4G100200.t1"; gene_id "Ledus.S4G100200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11335.t1 is derived from g4953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3664981	3665217	.	+	.	Ledus.S4G049100
Ledus.S4	AUGUSTUS	transcript	3664981	3665217	.	+	.	transcript_id "Ledus.S4G049100.t1"; gene_id "Ledus.S4G049100"
Ledus.S4	AUGUSTUS	start_codon	3664981	3664983	.	+	0	transcript_id "Ledus.S4G049100.t1"; gene_id "Ledus.S4G049100"
Ledus.S4	AUGUSTUS	CDS	3664981	3665217	0.97	+	0	transcript_id "Ledus.S4G049100.t1"; gene_id "Ledus.S4G049100"
Ledus.S4	AUGUSTUS	exon	3664981	3665217	.	+	.	transcript_id "Ledus.S4G049100.t1"; gene_id "Ledus.S4G049100"
Ledus.S4	AUGUSTUS	stop_codon	3665218	3665220	.	+	0	transcript_id "Ledus.S4G049100.t1"; gene_id "Ledus.S4G049100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9784.t1 is derived from g10814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9780737	9781192	.	-	.	Ledus.S3G126100
Ledus.S3	AUGUSTUS	transcript	9780737	9781192	.	-	.	transcript_id "Ledus.S3G126100.t1"; gene_id "Ledus.S3G126100"
Ledus.S3	AUGUSTUS	stop_codon	9780734	9780736	.	-	0	transcript_id "Ledus.S3G126100.t1"; gene_id "Ledus.S3G126100"
Ledus.S3	AUGUSTUS	CDS	9780737	9781192	0.93	-	0	transcript_id "Ledus.S3G126100.t1"; gene_id "Ledus.S3G126100"
Ledus.S3	AUGUSTUS	exon	9780737	9781192	.	-	.	transcript_id "Ledus.S3G126100.t1"; gene_id "Ledus.S3G126100"
Ledus.S3	AUGUSTUS	start_codon	9781190	9781192	.	-	0	transcript_id "Ledus.S3G126100.t1"; gene_id "Ledus.S3G126100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12491.t1 is derived from g6112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12369792	12372273	.	+	.	Ledus.S4G164700
Ledus.S4	AUGUSTUS	transcript	12369792	12372273	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	start_codon	12369792	12369794	.	+	0	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	CDS	12369792	12369867	0.93	+	0	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	exon	12369792	12369867	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	intron	12369868	12369963	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	CDS	12369964	12370037	1	+	2	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	exon	12369964	12370037	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	intron	12370038	12370116	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	CDS	12370117	12370324	1	+	0	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	exon	12370117	12370324	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	intron	12370325	12370408	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	CDS	12370409	12370689	1	+	2	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	exon	12370409	12370689	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	intron	12370690	12370783	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	CDS	12370784	12371487	1	+	0	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	exon	12370784	12371487	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	intron	12371488	12371565	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	CDS	12371566	12371975	1	+	1	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	exon	12371566	12371975	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	intron	12371976	12372082	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	CDS	12372083	12372273	1	+	2	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	exon	12372083	12372273	.	+	.	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
Ledus.S4	AUGUSTUS	stop_codon	12372274	12372276	.	+	0	transcript_id "Ledus.S4G164700.t1"; gene_id "Ledus.S4G164700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8634.t1 is derived from g9664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	934844	936681	.	+	.	Ledus.S3G011100
Ledus.S3	AUGUSTUS	transcript	934844	936681	.	+	.	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	start_codon	934844	934846	.	+	0	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	934844	934898	0.37	+	0	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	934844	934898	.	+	.	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	intron	934899	935093	.	+	.	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	935094	935415	0.94	+	2	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	935094	935415	.	+	.	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	intron	935416	935487	.	+	.	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	935488	935590	1	+	1	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	935488	935590	.	+	.	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	intron	935591	936624	.	+	.	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	936625	936681	1	+	0	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	936625	936681	.	+	.	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	stop_codon	936682	936684	.	+	0	transcript_id "Ledus.S3G011100.t1"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	transcript	934876	936681	.	+	.	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	start_codon	934876	934878	.	+	0	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	934876	934898	0.81	+	0	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	934876	934898	.	+	.	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	intron	934899	935083	.	+	.	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	935084	935129	0.58	+	1	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	935084	935129	.	+	.	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	intron	935130	935316	.	+	.	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	935317	935411	0.6	+	0	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	935317	935411	.	+	.	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	intron	935412	935487	.	+	.	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	935488	935590	1	+	1	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	935488	935590	.	+	.	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	intron	935591	936624	.	+	.	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	936625	936681	1	+	0	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	936625	936681	.	+	.	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	stop_codon	936682	936684	.	+	0	transcript_id "Ledus.S3G011100.t2"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	transcript	934876	936681	.	+	.	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	start_codon	934876	934878	.	+	0	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	934876	934898	0.33	+	0	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	934876	934898	.	+	.	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	intron	934899	935093	.	+	.	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	935094	935161	0.33	+	1	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	935094	935161	.	+	.	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	intron	935162	935335	.	+	.	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	935336	935411	0.23	+	2	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	935336	935411	.	+	.	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	intron	935412	935487	.	+	.	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	935488	935590	1	+	1	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	935488	935590	.	+	.	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	intron	935591	936624	.	+	.	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	CDS	936625	936681	1	+	0	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	exon	936625	936681	.	+	.	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
Ledus.S3	AUGUSTUS	stop_codon	936682	936684	.	+	0	transcript_id "Ledus.S3G011100.t3"; gene_id "Ledus.S3G011100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1999.t1 is derived from g8862.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14121817	14124009	.	+	.	Ledus.S2G188100
Ledus.S2	AUGUSTUS	transcript	14121817	14124009	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	start_codon	14121817	14121819	.	+	0	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	CDS	14121817	14122035	0.46	+	0	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	exon	14121817	14122035	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	intron	14122036	14122155	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	CDS	14122156	14122259	0.98	+	0	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	exon	14122156	14122259	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	intron	14122260	14122340	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	CDS	14122341	14122711	1	+	1	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	exon	14122341	14122711	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	intron	14122712	14122787	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	CDS	14122788	14123146	0.78	+	2	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	exon	14122788	14123146	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	intron	14123147	14123233	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	CDS	14123234	14123574	1	+	0	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	exon	14123234	14123574	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	intron	14123575	14123657	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	CDS	14123658	14123790	0.75	+	1	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	exon	14123658	14123790	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	intron	14123791	14123892	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	CDS	14123893	14124009	0.63	+	0	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	exon	14123893	14124009	.	+	.	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
Ledus.S2	AUGUSTUS	stop_codon	14124010	14124012	.	+	0	transcript_id "Ledus.S2G188100.t1"; gene_id "Ledus.S2G188100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5032.t1 is derived from g2471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21213037	21215250	.	+	.	Ledus.S1G245300
Ledus.S1	AUGUSTUS	transcript	21213037	21215250	.	+	.	transcript_id "Ledus.S1G245300.t1"; gene_id "Ledus.S1G245300"
Ledus.S1	AUGUSTUS	start_codon	21213037	21213039	.	+	0	transcript_id "Ledus.S1G245300.t1"; gene_id "Ledus.S1G245300"
Ledus.S1	AUGUSTUS	CDS	21213037	21215250	0.88	+	0	transcript_id "Ledus.S1G245300.t1"; gene_id "Ledus.S1G245300"
Ledus.S1	AUGUSTUS	exon	21213037	21215250	.	+	.	transcript_id "Ledus.S1G245300.t1"; gene_id "Ledus.S1G245300"
Ledus.S1	AUGUSTUS	stop_codon	21215251	21215253	.	+	0	transcript_id "Ledus.S1G245300.t1"; gene_id "Ledus.S1G245300"
# This transcript jg7539.t2 is derived from g12210.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7540.t1 is derived from g12211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3745016	3748489	.	+	.	Ledus.S5G031800
Ledus.S5	AUGUSTUS	transcript	3745016	3748489	.	+	.	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	start_codon	3745016	3745018	.	+	0	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	CDS	3745016	3747080	0.77	+	0	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	exon	3745016	3747080	.	+	.	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	intron	3747081	3747163	.	+	.	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	CDS	3747164	3747676	1	+	2	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	exon	3747164	3747676	.	+	.	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	intron	3747677	3747761	.	+	.	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	CDS	3747762	3748285	1	+	2	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	exon	3747762	3748285	.	+	.	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	intron	3748286	3748375	.	+	.	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	CDS	3748376	3748489	0.64	+	0	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	exon	3748376	3748489	.	+	.	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
Ledus.S5	AUGUSTUS	stop_codon	3748490	3748492	.	+	0	transcript_id "Ledus.S5G031800.t1"; gene_id "Ledus.S5G031800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg753.t1 is derived from g7614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4823155	4823936	.	+	.	Ledus.S2G063500
Ledus.S2	AUGUSTUS	transcript	4823155	4823936	.	+	.	transcript_id "Ledus.S2G063500.t1"; gene_id "Ledus.S2G063500"
Ledus.S2	AUGUSTUS	start_codon	4823155	4823157	.	+	0	transcript_id "Ledus.S2G063500.t1"; gene_id "Ledus.S2G063500"
Ledus.S2	AUGUSTUS	CDS	4823155	4823252	0.57	+	0	transcript_id "Ledus.S2G063500.t1"; gene_id "Ledus.S2G063500"
Ledus.S2	AUGUSTUS	exon	4823155	4823252	.	+	.	transcript_id "Ledus.S2G063500.t1"; gene_id "Ledus.S2G063500"
Ledus.S2	AUGUSTUS	intron	4823253	4823457	.	+	.	transcript_id "Ledus.S2G063500.t1"; gene_id "Ledus.S2G063500"
Ledus.S2	AUGUSTUS	CDS	4823458	4823761	0.89	+	1	transcript_id "Ledus.S2G063500.t1"; gene_id "Ledus.S2G063500"
Ledus.S2	AUGUSTUS	exon	4823458	4823761	.	+	.	transcript_id "Ledus.S2G063500.t1"; gene_id "Ledus.S2G063500"
Ledus.S2	AUGUSTUS	intron	4823762	4823864	.	+	.	transcript_id "Ledus.S2G063500.t1"; gene_id "Ledus.S2G063500"
Ledus.S2	AUGUSTUS	CDS	4823865	4823936	0.84	+	0	transcript_id "Ledus.S2G063500.t1"; gene_id "Ledus.S2G063500"
Ledus.S2	AUGUSTUS	exon	4823865	4823936	.	+	.	transcript_id "Ledus.S2G063500.t1"; gene_id "Ledus.S2G063500"
Ledus.S2	AUGUSTUS	stop_codon	4823937	4823939	.	+	0	transcript_id "Ledus.S2G063500.t1"; gene_id "Ledus.S2G063500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9326.t1 is derived from g10356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6133735	6137085	.	-	.	Ledus.S3G080300
Ledus.S3	AUGUSTUS	transcript	6133735	6137085	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	stop_codon	6133732	6133734	.	-	0	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6133735	6133819	1	-	1	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6133735	6133819	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6133820	6133907	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6133908	6133999	1	-	0	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6133908	6133999	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6134000	6134278	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6134279	6134353	1	-	0	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6134279	6134353	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6134354	6134489	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6134490	6134559	1	-	1	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6134490	6134559	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6134560	6134739	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6134740	6134807	1	-	0	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6134740	6134807	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6134808	6134965	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6134966	6135074	0.98	-	1	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6134966	6135074	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6135075	6135178	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6135179	6135427	1	-	1	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6135179	6135427	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6135428	6135512	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6135513	6135725	1	-	1	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6135513	6135725	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6135726	6135952	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6135953	6136046	1	-	2	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6135953	6136046	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6136047	6136132	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6136133	6136203	1	-	1	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6136133	6136203	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6136204	6136282	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6136283	6136402	1	-	1	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6136283	6136402	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6136403	6136494	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6136495	6136550	1	-	0	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6136495	6136550	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6136551	6136632	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6136633	6136710	1	-	0	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6136633	6136710	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	intron	6136711	6136788	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	CDS	6136789	6137085	0.98	-	0	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	exon	6136789	6137085	.	-	.	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
Ledus.S3	AUGUSTUS	start_codon	6137083	6137085	.	-	0	transcript_id "Ledus.S3G080300.t1"; gene_id "Ledus.S3G080300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12523.t1 is derived from g6144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12723987	12724818	.	+	.	Ledus.S4G167900
Ledus.S4	AUGUSTUS	transcript	12723987	12724818	.	+	.	transcript_id "Ledus.S4G167900.t1"; gene_id "Ledus.S4G167900"
Ledus.S4	AUGUSTUS	start_codon	12723987	12723989	.	+	0	transcript_id "Ledus.S4G167900.t1"; gene_id "Ledus.S4G167900"
Ledus.S4	AUGUSTUS	CDS	12723987	12724050	0.33	+	0	transcript_id "Ledus.S4G167900.t1"; gene_id "Ledus.S4G167900"
Ledus.S4	AUGUSTUS	exon	12723987	12724050	.	+	.	transcript_id "Ledus.S4G167900.t1"; gene_id "Ledus.S4G167900"
Ledus.S4	AUGUSTUS	intron	12724051	12724258	.	+	.	transcript_id "Ledus.S4G167900.t1"; gene_id "Ledus.S4G167900"
Ledus.S4	AUGUSTUS	CDS	12724259	12724447	0.46	+	2	transcript_id "Ledus.S4G167900.t1"; gene_id "Ledus.S4G167900"
Ledus.S4	AUGUSTUS	exon	12724259	12724447	.	+	.	transcript_id "Ledus.S4G167900.t1"; gene_id "Ledus.S4G167900"
Ledus.S4	AUGUSTUS	intron	12724448	12724723	.	+	.	transcript_id "Ledus.S4G167900.t1"; gene_id "Ledus.S4G167900"
Ledus.S4	AUGUSTUS	CDS	12724724	12724818	0.94	+	2	transcript_id "Ledus.S4G167900.t1"; gene_id "Ledus.S4G167900"
Ledus.S4	AUGUSTUS	exon	12724724	12724818	.	+	.	transcript_id "Ledus.S4G167900.t1"; gene_id "Ledus.S4G167900"
Ledus.S4	AUGUSTUS	stop_codon	12724819	12724821	.	+	0	transcript_id "Ledus.S4G167900.t1"; gene_id "Ledus.S4G167900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1617.t1 is derived from g8478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11443147	11449794	.	+	.	Ledus.S2G149900
Ledus.S2	AUGUSTUS	transcript	11443147	11449794	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	start_codon	11443147	11443149	.	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11443147	11443272	0.76	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11443147	11443272	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11443273	11443637	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11443638	11443688	1	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11443638	11443688	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11443689	11444024	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11444025	11444142	1	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11444025	11444142	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11444143	11444489	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11444490	11444588	1	+	2	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11444490	11444588	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11444589	11445047	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11445048	11445112	1	+	2	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11445048	11445112	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11445113	11445276	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11445277	11445394	1	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11445277	11445394	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11445395	11445469	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11445470	11445812	1	+	2	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11445470	11445812	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11445813	11446069	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11446070	11446217	1	+	1	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11446070	11446217	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11446218	11446342	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11446343	11446444	1	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11446343	11446444	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11446445	11446636	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11446637	11446756	1	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11446637	11446756	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11446757	11446845	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11446846	11446929	1	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11446846	11446929	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11446930	11447055	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11447056	11447183	1	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11447056	11447183	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11447184	11447365	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11447366	11447450	1	+	1	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11447366	11447450	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11447451	11447570	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11447571	11447709	1	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11447571	11447709	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11447710	11447844	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11447845	11447924	1	+	2	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11447845	11447924	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11447925	11448046	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11448047	11448103	1	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11448047	11448103	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11448104	11448231	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11448232	11448391	1	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11448232	11448391	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11448392	11448545	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11448546	11448727	1	+	2	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11448546	11448727	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11448728	11448920	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11448921	11449037	1	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11448921	11449037	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11449038	11449125	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11449126	11449193	1	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11449126	11449193	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11449194	11449281	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11449282	11449451	0.99	+	1	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11449282	11449451	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	intron	11449452	11449561	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	CDS	11449562	11449794	0.93	+	2	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	exon	11449562	11449794	.	+	.	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
Ledus.S2	AUGUSTUS	stop_codon	11449795	11449797	.	+	0	transcript_id "Ledus.S2G149900.t1"; gene_id "Ledus.S2G149900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10328.t1 is derived from g11358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14238168	14238773	.	-	.	Ledus.S3G180500
Ledus.S3	AUGUSTUS	transcript	14238168	14238773	.	-	.	transcript_id "Ledus.S3G180500.t1"; gene_id "Ledus.S3G180500"
Ledus.S3	AUGUSTUS	stop_codon	14238165	14238167	.	-	0	transcript_id "Ledus.S3G180500.t1"; gene_id "Ledus.S3G180500"
Ledus.S3	AUGUSTUS	CDS	14238168	14238242	0.98	-	0	transcript_id "Ledus.S3G180500.t1"; gene_id "Ledus.S3G180500"
Ledus.S3	AUGUSTUS	exon	14238168	14238242	.	-	.	transcript_id "Ledus.S3G180500.t1"; gene_id "Ledus.S3G180500"
Ledus.S3	AUGUSTUS	intron	14238243	14238330	.	-	.	transcript_id "Ledus.S3G180500.t1"; gene_id "Ledus.S3G180500"
Ledus.S3	AUGUSTUS	CDS	14238331	14238390	0.98	-	0	transcript_id "Ledus.S3G180500.t1"; gene_id "Ledus.S3G180500"
Ledus.S3	AUGUSTUS	exon	14238331	14238390	.	-	.	transcript_id "Ledus.S3G180500.t1"; gene_id "Ledus.S3G180500"
Ledus.S3	AUGUSTUS	intron	14238391	14238686	.	-	.	transcript_id "Ledus.S3G180500.t1"; gene_id "Ledus.S3G180500"
Ledus.S3	AUGUSTUS	CDS	14238687	14238773	0.79	-	0	transcript_id "Ledus.S3G180500.t1"; gene_id "Ledus.S3G180500"
Ledus.S3	AUGUSTUS	exon	14238687	14238773	.	-	.	transcript_id "Ledus.S3G180500.t1"; gene_id "Ledus.S3G180500"
Ledus.S3	AUGUSTUS	start_codon	14238771	14238773	.	-	0	transcript_id "Ledus.S3G180500.t1"; gene_id "Ledus.S3G180500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6740.t1 is derived from g4183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33685429	33685710	.	+	.	Ledus.S1G416100
Ledus.S1	AUGUSTUS	transcript	33685429	33685710	.	+	.	transcript_id "Ledus.S1G416100.t1"; gene_id "Ledus.S1G416100"
Ledus.S1	AUGUSTUS	start_codon	33685429	33685431	.	+	0	transcript_id "Ledus.S1G416100.t1"; gene_id "Ledus.S1G416100"
Ledus.S1	AUGUSTUS	CDS	33685429	33685710	0.53	+	0	transcript_id "Ledus.S1G416100.t1"; gene_id "Ledus.S1G416100"
Ledus.S1	AUGUSTUS	exon	33685429	33685710	.	+	.	transcript_id "Ledus.S1G416100.t1"; gene_id "Ledus.S1G416100"
Ledus.S1	AUGUSTUS	stop_codon	33685711	33685713	.	+	0	transcript_id "Ledus.S1G416100.t1"; gene_id "Ledus.S1G416100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10071.t1 is derived from g11101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12498107	12498304	.	+	.	Ledus.S3G154800
Ledus.S3	AUGUSTUS	transcript	12498107	12498304	.	+	.	transcript_id "Ledus.S3G154800.t1"; gene_id "Ledus.S3G154800"
Ledus.S3	AUGUSTUS	start_codon	12498107	12498109	.	+	0	transcript_id "Ledus.S3G154800.t1"; gene_id "Ledus.S3G154800"
Ledus.S3	AUGUSTUS	CDS	12498107	12498304	0.79	+	0	transcript_id "Ledus.S3G154800.t1"; gene_id "Ledus.S3G154800"
Ledus.S3	AUGUSTUS	exon	12498107	12498304	.	+	.	transcript_id "Ledus.S3G154800.t1"; gene_id "Ledus.S3G154800"
Ledus.S3	AUGUSTUS	stop_codon	12498305	12498307	.	+	0	transcript_id "Ledus.S3G154800.t1"; gene_id "Ledus.S3G154800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1349.t1 is derived from g8210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9401933	9402610	.	+	.	Ledus.S2G123100
Ledus.S2	AUGUSTUS	transcript	9401933	9402610	.	+	.	transcript_id "Ledus.S2G123100.t1"; gene_id "Ledus.S2G123100"
Ledus.S2	AUGUSTUS	start_codon	9401933	9401935	.	+	0	transcript_id "Ledus.S2G123100.t1"; gene_id "Ledus.S2G123100"
Ledus.S2	AUGUSTUS	CDS	9401933	9402610	0.65	+	0	transcript_id "Ledus.S2G123100.t1"; gene_id "Ledus.S2G123100"
Ledus.S2	AUGUSTUS	exon	9401933	9402610	.	+	.	transcript_id "Ledus.S2G123100.t1"; gene_id "Ledus.S2G123100"
Ledus.S2	AUGUSTUS	stop_codon	9402611	9402613	.	+	0	transcript_id "Ledus.S2G123100.t1"; gene_id "Ledus.S2G123100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10000.t1 is derived from g11030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11790963	11792575	.	+	.	Ledus.S3G147700
Ledus.S3	AUGUSTUS	transcript	11790963	11792575	.	+	.	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	start_codon	11790963	11790965	.	+	0	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	CDS	11790963	11791598	0.94	+	0	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	exon	11790963	11791598	.	+	.	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	intron	11791599	11791685	.	+	.	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	CDS	11791686	11791937	1	+	0	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	exon	11791686	11791937	.	+	.	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	intron	11791938	11792033	.	+	.	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	CDS	11792034	11792338	0.99	+	0	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	exon	11792034	11792338	.	+	.	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	intron	11792339	11792487	.	+	.	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	CDS	11792488	11792575	0.95	+	1	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	exon	11792488	11792575	.	+	.	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
Ledus.S3	AUGUSTUS	stop_codon	11792576	11792578	.	+	0	transcript_id "Ledus.S3G147700.t1"; gene_id "Ledus.S3G147700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2038.t1 is derived from g8901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14282875	14287269	.	+	.	Ledus.S2G192000
Ledus.S2	AUGUSTUS	transcript	14282875	14287269	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	start_codon	14282875	14282877	.	+	0	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14282875	14283008	0.4	+	0	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14282875	14283008	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	intron	14283009	14283279	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14283280	14283372	1	+	1	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14283280	14283372	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	intron	14283373	14283499	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14283500	14283593	1	+	1	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14283500	14283593	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	intron	14283594	14283690	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14283691	14283728	1	+	0	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14283691	14283728	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	intron	14283729	14285223	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14285224	14285318	1	+	1	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14285224	14285318	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	intron	14285319	14285503	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14285504	14285583	1	+	2	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14285504	14285583	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	intron	14285584	14285687	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14285688	14285744	1	+	0	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14285688	14285744	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	intron	14285745	14286008	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14286009	14286101	1	+	0	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14286009	14286101	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	intron	14286102	14286264	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14286265	14286339	1	+	0	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14286265	14286339	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	intron	14286340	14286458	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14286459	14286556	0.93	+	0	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14286459	14286556	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	intron	14286557	14286780	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14286781	14286892	0.87	+	1	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14286781	14286892	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	intron	14286893	14287105	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14287106	14287147	0.93	+	0	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14287106	14287147	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	intron	14287148	14287230	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	CDS	14287231	14287269	0.93	+	0	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	exon	14287231	14287269	.	+	.	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
Ledus.S2	AUGUSTUS	stop_codon	14287270	14287272	.	+	0	transcript_id "Ledus.S2G192000.t1"; gene_id "Ledus.S2G192000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10934.t1 is derived from g4552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	694323	697595	.	-	.	Ledus.S4G009000
Ledus.S4	AUGUSTUS	transcript	694323	697595	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	stop_codon	694320	694322	.	-	0	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	694323	694362	1	-	1	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	694323	694362	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	694363	694449	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	694450	694568	0.83	-	0	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	694450	694568	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	694569	694697	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	694698	694900	0.82	-	2	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	694698	694900	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	694901	695061	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	695062	695146	1	-	0	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	695062	695146	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	695147	695300	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	695301	695395	1	-	2	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	695301	695395	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	695396	695623	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	695624	695702	1	-	0	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	695624	695702	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	695703	695835	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	695836	695913	1	-	0	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	695836	695913	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	695914	696009	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	696010	696078	0.55	-	0	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	696010	696078	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	696079	696187	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	696188	696253	0.55	-	0	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	696188	696253	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	696254	696376	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	696377	696412	1	-	0	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	696377	696412	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	696413	696535	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	696536	696604	1	-	0	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	696536	696604	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	696605	696726	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	696727	696792	1	-	0	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	696727	696792	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	696793	697230	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	697231	697426	1	-	1	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	697231	697426	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	intron	697427	697515	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	CDS	697516	697595	0.6	-	0	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	exon	697516	697595	.	-	.	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
Ledus.S4	AUGUSTUS	start_codon	697593	697595	.	-	0	transcript_id "Ledus.S4G009000.t1"; gene_id "Ledus.S4G009000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11257.t1 is derived from g4875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2978677	2978937	.	+	.	Ledus.S4G041300
Ledus.S4	AUGUSTUS	transcript	2978677	2978937	.	+	.	transcript_id "Ledus.S4G041300.t1"; gene_id "Ledus.S4G041300"
Ledus.S4	AUGUSTUS	start_codon	2978677	2978679	.	+	0	transcript_id "Ledus.S4G041300.t1"; gene_id "Ledus.S4G041300"
Ledus.S4	AUGUSTUS	CDS	2978677	2978937	0.71	+	0	transcript_id "Ledus.S4G041300.t1"; gene_id "Ledus.S4G041300"
Ledus.S4	AUGUSTUS	exon	2978677	2978937	.	+	.	transcript_id "Ledus.S4G041300.t1"; gene_id "Ledus.S4G041300"
Ledus.S4	AUGUSTUS	stop_codon	2978938	2978940	.	+	0	transcript_id "Ledus.S4G041300.t1"; gene_id "Ledus.S4G041300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7233.t1 is derived from g11904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	180965	183464	.	-	.	Ledus.S5G001100
Ledus.S5	AUGUSTUS	transcript	180965	183464	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	stop_codon	180962	180964	.	-	0	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	CDS	180965	181098	0.69	-	2	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	exon	180965	181098	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	intron	181099	181205	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	CDS	181206	181329	0.5	-	0	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	exon	181206	181329	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	intron	181330	181422	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	CDS	181423	181633	1	-	1	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	exon	181423	181633	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	intron	181634	181698	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	CDS	181699	181906	0.99	-	2	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	exon	181699	181906	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	intron	181907	181989	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	CDS	181990	182068	1	-	0	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	exon	181990	182068	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	intron	182069	182173	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	CDS	182174	182263	1	-	0	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	exon	182174	182263	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	intron	182264	182357	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	CDS	182358	182438	1	-	0	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	exon	182358	182438	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	intron	182439	182531	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	CDS	182532	182573	1	-	0	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	exon	182532	182573	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	intron	182574	182708	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	CDS	182709	182810	1	-	0	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	exon	182709	182810	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	intron	182811	182908	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	CDS	182909	182968	1	-	0	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	exon	182909	182968	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	intron	182969	183089	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	CDS	183090	183164	0.74	-	0	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	exon	183090	183164	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	intron	183165	183290	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	CDS	183291	183464	0.58	-	0	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	exon	183291	183464	.	-	.	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
Ledus.S5	AUGUSTUS	start_codon	183462	183464	.	-	0	transcript_id "Ledus.S5G001100.t1"; gene_id "Ledus.S5G001100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11223.t1 is derived from g4841.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2810615	2812909	.	+	.	Ledus.S4G037900
Ledus.S4	AUGUSTUS	transcript	2810615	2812909	.	+	.	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	start_codon	2810615	2810617	.	+	0	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	CDS	2810615	2810640	0.97	+	0	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	exon	2810615	2810640	.	+	.	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	intron	2810641	2811413	.	+	.	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	CDS	2811414	2811633	0.99	+	1	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	exon	2811414	2811633	.	+	.	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	intron	2811634	2811732	.	+	.	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	CDS	2811733	2811961	1	+	0	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	exon	2811733	2811961	.	+	.	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	intron	2811962	2812101	.	+	.	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	CDS	2812102	2812487	1	+	2	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	exon	2812102	2812487	.	+	.	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	intron	2812488	2812567	.	+	.	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	CDS	2812568	2812909	0.97	+	0	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	exon	2812568	2812909	.	+	.	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
Ledus.S4	AUGUSTUS	stop_codon	2812910	2812912	.	+	0	transcript_id "Ledus.S4G037900.t1"; gene_id "Ledus.S4G037900"
# This transcript jg7998.t2 is derived from g12669.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7999.t1 is derived from g12670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8410654	8413163	.	+	.	Ledus.S5G077700
Ledus.S5	AUGUSTUS	transcript	8410654	8413163	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	start_codon	8410654	8410656	.	+	0	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	CDS	8410654	8410676	1	+	0	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	exon	8410654	8410676	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	intron	8410677	8410873	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	CDS	8410874	8410886	0.82	+	1	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	exon	8410874	8410886	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	intron	8410887	8410956	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	CDS	8410957	8410981	0.57	+	0	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	exon	8410957	8410981	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	intron	8410982	8411330	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	CDS	8411331	8411360	1	+	2	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	exon	8411331	8411360	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	intron	8411361	8411468	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	CDS	8411469	8411512	1	+	2	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	exon	8411469	8411512	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	intron	8411513	8411843	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	CDS	8411844	8412003	0.65	+	0	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	exon	8411844	8412003	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	intron	8412004	8412113	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	CDS	8412114	8412220	0.45	+	2	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	exon	8412114	8412220	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	intron	8412221	8412414	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	CDS	8412415	8412546	1	+	0	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	exon	8412415	8412546	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	intron	8412547	8412657	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	CDS	8412658	8412814	1	+	0	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	exon	8412658	8412814	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	intron	8412815	8413044	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	CDS	8413045	8413163	1	+	2	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	exon	8413045	8413163	.	+	.	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
Ledus.S5	AUGUSTUS	stop_codon	8413164	8413166	.	+	0	transcript_id "Ledus.S5G077700.t1"; gene_id "Ledus.S5G077700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6811.t1 is derived from g4255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34404198	34406581	.	+	.	Ledus.S1G423200
Ledus.S1	AUGUSTUS	transcript	34404198	34406581	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	start_codon	34404198	34404200	.	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34404198	34404347	1	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34404198	34404347	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	intron	34404348	34404433	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34404434	34404501	0.99	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34404434	34404501	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	intron	34404502	34404576	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34404577	34404652	0.98	+	1	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34404577	34404652	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	intron	34404653	34404758	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34404759	34404842	1	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34404759	34404842	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	intron	34404843	34404932	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34404933	34405043	1	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34404933	34405043	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	intron	34405044	34405118	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34405119	34405232	0.93	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34405119	34405232	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	intron	34405233	34405385	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34405386	34405442	0.97	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34405386	34405442	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	intron	34405443	34405532	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34405533	34405700	1	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34405533	34405700	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	intron	34405701	34405784	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34405785	34405862	1	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34405785	34405862	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	intron	34405863	34405949	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34405950	34406051	0.9	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34405950	34406051	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	intron	34406052	34406153	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34406154	34406267	0.99	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34406154	34406267	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	intron	34406268	34406355	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34406356	34406428	1	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34406356	34406428	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	intron	34406429	34406516	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	CDS	34406517	34406581	1	+	2	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	exon	34406517	34406581	.	+	.	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
Ledus.S1	AUGUSTUS	stop_codon	34406582	34406584	.	+	0	transcript_id "Ledus.S1G423200.t1"; gene_id "Ledus.S1G423200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4771.t1 is derived from g2209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19675421	19680687	.	-	.	Ledus.S1G219200
Ledus.S1	AUGUSTUS	transcript	19675421	19680687	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	stop_codon	19675418	19675420	.	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19675421	19675681	0.74	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19675421	19675681	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19675682	19675794	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19675795	19675891	0.99	-	1	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19675795	19675891	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19675892	19675989	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19675990	19676084	1	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19675990	19676084	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19676085	19676162	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19676163	19676267	1	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19676163	19676267	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19676268	19676411	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19676412	19676585	1	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19676412	19676585	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19676586	19676735	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19676736	19676832	1	-	1	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19676736	19676832	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19676833	19676928	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19676929	19677191	1	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19676929	19677191	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19677192	19677277	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19677278	19677435	1	-	2	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19677278	19677435	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19677436	19677578	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19677579	19677747	1	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19677579	19677747	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19677748	19677833	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19677834	19677912	1	-	1	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19677834	19677912	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19677913	19678043	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19678044	19678135	1	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19678044	19678135	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19678136	19678225	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19678226	19678294	1	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19678226	19678294	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19678295	19678454	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19678455	19678613	1	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19678455	19678613	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19678614	19678697	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19678698	19678754	1	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19678698	19678754	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19678755	19678894	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19678895	19678957	0.98	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19678895	19678957	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19678958	19679065	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19679066	19679113	0.98	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19679066	19679113	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19679114	19679240	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19679241	19679306	1	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19679241	19679306	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19679307	19679446	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19679447	19679510	1	-	1	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19679447	19679510	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19679511	19679636	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19679637	19679707	1	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19679637	19679707	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19679708	19680013	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19680014	19680116	1	-	1	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19680014	19680116	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19680117	19680197	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19680198	19680264	1	-	2	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19680198	19680264	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	intron	19680265	19680548	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	CDS	19680549	19680687	0.83	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	exon	19680549	19680687	.	-	.	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
Ledus.S1	AUGUSTUS	start_codon	19680685	19680687	.	-	0	transcript_id "Ledus.S1G219200.t1"; gene_id "Ledus.S1G219200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9203.t1 is derived from g10233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5328548	5331766	.	+	.	Ledus.S3G068000
Ledus.S3	AUGUSTUS	transcript	5328548	5331766	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	start_codon	5328548	5328550	.	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5328548	5328844	0.76	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5328548	5328844	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5328845	5329009	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5329010	5329081	0.99	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5329010	5329081	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5329082	5329185	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5329186	5329266	0.77	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5329186	5329266	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5329267	5329384	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5329385	5329558	1	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5329385	5329558	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5329559	5329671	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5329672	5329740	1	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5329672	5329740	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5329741	5329908	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5329909	5329995	1	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5329909	5329995	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5329996	5330085	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5330086	5330184	0.99	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5330086	5330184	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5330185	5330285	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5330286	5330369	1	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5330286	5330369	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5330370	5330484	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5330485	5330571	1	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5330485	5330571	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5330572	5330695	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5330696	5330767	1	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5330696	5330767	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5330768	5330863	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5330864	5330977	1	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5330864	5330977	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5330978	5331064	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5331065	5331152	1	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5331065	5331152	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5331153	5331245	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5331246	5331341	1	+	2	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5331246	5331341	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	intron	5331342	5331527	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	CDS	5331528	5331766	1	+	2	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	exon	5331528	5331766	.	+	.	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
Ledus.S3	AUGUSTUS	stop_codon	5331767	5331769	.	+	0	transcript_id "Ledus.S3G068000.t1"; gene_id "Ledus.S3G068000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4171.t1 is derived from g1607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15101460	15103978	.	+	.	Ledus.S1G159200
Ledus.S1	AUGUSTUS	transcript	15101460	15103978	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	start_codon	15101460	15101462	.	+	0	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	CDS	15101460	15101801	1	+	0	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	exon	15101460	15101801	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	intron	15101802	15102080	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	CDS	15102081	15102325	1	+	0	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	exon	15102081	15102325	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	intron	15102326	15102406	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	CDS	15102407	15102560	1	+	1	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	exon	15102407	15102560	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	intron	15102561	15102786	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	CDS	15102787	15103001	1	+	0	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	exon	15102787	15103001	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	intron	15103002	15103091	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	CDS	15103092	15103209	1	+	1	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	exon	15103092	15103209	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	intron	15103210	15103301	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	CDS	15103302	15103512	1	+	0	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	exon	15103302	15103512	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	intron	15103513	15103599	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	CDS	15103600	15103661	1	+	2	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	exon	15103600	15103661	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	intron	15103662	15103762	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	CDS	15103763	15103978	1	+	0	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	exon	15103763	15103978	.	+	.	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
Ledus.S1	AUGUSTUS	stop_codon	15103979	15103981	.	+	0	transcript_id "Ledus.S1G159200.t1"; gene_id "Ledus.S1G159200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg768.t1 is derived from g7629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4894841	4896077	.	+	.	Ledus.S2G065000
Ledus.S2	AUGUSTUS	transcript	4894841	4896077	.	+	.	transcript_id "Ledus.S2G065000.t1"; gene_id "Ledus.S2G065000"
Ledus.S2	AUGUSTUS	start_codon	4894841	4894843	.	+	0	transcript_id "Ledus.S2G065000.t1"; gene_id "Ledus.S2G065000"
Ledus.S2	AUGUSTUS	CDS	4894841	4895797	0.99	+	0	transcript_id "Ledus.S2G065000.t1"; gene_id "Ledus.S2G065000"
Ledus.S2	AUGUSTUS	exon	4894841	4895797	.	+	.	transcript_id "Ledus.S2G065000.t1"; gene_id "Ledus.S2G065000"
Ledus.S2	AUGUSTUS	intron	4895798	4895924	.	+	.	transcript_id "Ledus.S2G065000.t1"; gene_id "Ledus.S2G065000"
Ledus.S2	AUGUSTUS	CDS	4895925	4896077	0.63	+	0	transcript_id "Ledus.S2G065000.t1"; gene_id "Ledus.S2G065000"
Ledus.S2	AUGUSTUS	exon	4895925	4896077	.	+	.	transcript_id "Ledus.S2G065000.t1"; gene_id "Ledus.S2G065000"
Ledus.S2	AUGUSTUS	stop_codon	4896078	4896080	.	+	0	transcript_id "Ledus.S2G065000.t1"; gene_id "Ledus.S2G065000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2454.t1 is derived from g9317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18210811	18211733	.	+	.	Ledus.S2G233600
Ledus.S2	AUGUSTUS	transcript	18210811	18211733	.	+	.	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	start_codon	18210811	18210813	.	+	0	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	CDS	18210811	18210880	0.91	+	0	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	exon	18210811	18210880	.	+	.	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	intron	18210881	18211113	.	+	.	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	CDS	18211114	18211200	0.84	+	2	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	exon	18211114	18211200	.	+	.	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	intron	18211201	18211342	.	+	.	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	CDS	18211343	18211414	0.83	+	2	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	exon	18211343	18211414	.	+	.	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	intron	18211415	18211536	.	+	.	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	CDS	18211537	18211733	0.92	+	2	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	exon	18211537	18211733	.	+	.	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
Ledus.S2	AUGUSTUS	stop_codon	18211734	18211736	.	+	0	transcript_id "Ledus.S2G233600.t1"; gene_id "Ledus.S2G233600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12516.t1 is derived from g6137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12593273	12595184	.	-	.	Ledus.S4G167200
Ledus.S4	AUGUSTUS	transcript	12593273	12595184	.	-	.	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	stop_codon	12593270	12593272	.	-	0	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	CDS	12593273	12593422	0.97	-	0	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	exon	12593273	12593422	.	-	.	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	intron	12593423	12593521	.	-	.	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	CDS	12593522	12593806	0.71	-	0	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	exon	12593522	12593806	.	-	.	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	intron	12593807	12593920	.	-	.	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	CDS	12593921	12594287	0.72	-	1	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	exon	12593921	12594287	.	-	.	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	intron	12594288	12594378	.	-	.	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	CDS	12594379	12594484	1	-	2	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	exon	12594379	12594484	.	-	.	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	intron	12594485	12594642	.	-	.	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	CDS	12594643	12594852	1	-	2	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	exon	12594643	12594852	.	-	.	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	intron	12594853	12594979	.	-	.	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	CDS	12594980	12595184	1	-	0	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	exon	12594980	12595184	.	-	.	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
Ledus.S4	AUGUSTUS	start_codon	12595182	12595184	.	-	0	transcript_id "Ledus.S4G167200.t1"; gene_id "Ledus.S4G167200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12551.t1 is derived from g6173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12851084	12853780	.	+	.	Ledus.S4G170700
Ledus.S4	AUGUSTUS	transcript	12851084	12853780	.	+	.	transcript_id "Ledus.S4G170700.t1"; gene_id "Ledus.S4G170700"
Ledus.S4	AUGUSTUS	start_codon	12851084	12851086	.	+	0	transcript_id "Ledus.S4G170700.t1"; gene_id "Ledus.S4G170700"
Ledus.S4	AUGUSTUS	CDS	12851084	12853414	0.71	+	0	transcript_id "Ledus.S4G170700.t1"; gene_id "Ledus.S4G170700"
Ledus.S4	AUGUSTUS	exon	12851084	12853414	.	+	.	transcript_id "Ledus.S4G170700.t1"; gene_id "Ledus.S4G170700"
Ledus.S4	AUGUSTUS	intron	12853415	12853519	.	+	.	transcript_id "Ledus.S4G170700.t1"; gene_id "Ledus.S4G170700"
Ledus.S4	AUGUSTUS	CDS	12853520	12853780	0.95	+	0	transcript_id "Ledus.S4G170700.t1"; gene_id "Ledus.S4G170700"
Ledus.S4	AUGUSTUS	exon	12853520	12853780	.	+	.	transcript_id "Ledus.S4G170700.t1"; gene_id "Ledus.S4G170700"
Ledus.S4	AUGUSTUS	stop_codon	12853781	12853783	.	+	0	transcript_id "Ledus.S4G170700.t1"; gene_id "Ledus.S4G170700"
Ledus.S4	AUGUSTUS	transcript	12851084	12853423	.	+	.	transcript_id "Ledus.S4G170700.t2"; gene_id "Ledus.S4G170700"
Ledus.S4	AUGUSTUS	start_codon	12851084	12851086	.	+	0	transcript_id "Ledus.S4G170700.t2"; gene_id "Ledus.S4G170700"
Ledus.S4	AUGUSTUS	CDS	12851084	12853423	0.77	+	0	transcript_id "Ledus.S4G170700.t2"; gene_id "Ledus.S4G170700"
Ledus.S4	AUGUSTUS	exon	12851084	12853423	.	+	.	transcript_id "Ledus.S4G170700.t2"; gene_id "Ledus.S4G170700"
Ledus.S4	AUGUSTUS	stop_codon	12853424	12853426	.	+	0	transcript_id "Ledus.S4G170700.t2"; gene_id "Ledus.S4G170700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7463.t1 is derived from g12134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2943448	2944734	.	+	.	Ledus.S5G024100
Ledus.S5	AUGUSTUS	transcript	2943448	2944734	.	+	.	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	start_codon	2943448	2943450	.	+	0	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2943448	2943648	1	+	0	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2943448	2943648	.	+	.	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2943649	2943739	.	+	.	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2943740	2943853	1	+	0	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2943740	2943853	.	+	.	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2943854	2943961	.	+	.	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2943962	2944117	1	+	0	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2943962	2944117	.	+	.	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2944118	2944211	.	+	.	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2944212	2944384	1	+	0	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2944212	2944384	.	+	.	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2944385	2944519	.	+	.	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2944520	2944625	1	+	1	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2944520	2944625	.	+	.	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2944626	2944707	.	+	.	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2944708	2944734	1	+	0	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2944708	2944734	.	+	.	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	stop_codon	2944735	2944737	.	+	0	transcript_id "Ledus.S5G024100.t1"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	transcript	2943448	2944734	.	+	.	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	start_codon	2943448	2943450	.	+	0	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2943448	2943672	1	+	0	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2943448	2943672	.	+	.	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2943673	2943739	.	+	.	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2943740	2943853	1	+	0	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2943740	2943853	.	+	.	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2943854	2943961	.	+	.	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2943962	2944117	1	+	0	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2943962	2944117	.	+	.	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2944118	2944211	.	+	.	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2944212	2944384	1	+	0	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2944212	2944384	.	+	.	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2944385	2944519	.	+	.	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2944520	2944625	1	+	1	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2944520	2944625	.	+	.	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2944626	2944707	.	+	.	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2944708	2944734	0.99	+	0	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2944708	2944734	.	+	.	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	stop_codon	2944735	2944737	.	+	0	transcript_id "Ledus.S5G024100.t2"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	transcript	2943448	2944734	.	+	.	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	start_codon	2943448	2943450	.	+	0	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2943448	2943672	0.94	+	0	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2943448	2943672	.	+	.	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2943673	2943754	.	+	.	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2943755	2943853	0.95	+	0	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2943755	2943853	.	+	.	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2943854	2943961	.	+	.	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2943962	2944117	1	+	0	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2943962	2944117	.	+	.	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2944118	2944211	.	+	.	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2944212	2944384	1	+	0	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2944212	2944384	.	+	.	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2944385	2944519	.	+	.	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2944520	2944625	1	+	1	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2944520	2944625	.	+	.	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	intron	2944626	2944707	.	+	.	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	CDS	2944708	2944734	0.97	+	0	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	exon	2944708	2944734	.	+	.	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
Ledus.S5	AUGUSTUS	stop_codon	2944735	2944737	.	+	0	transcript_id "Ledus.S5G024100.t3"; gene_id "Ledus.S5G024100"
# This transcript jg7750.t2 is derived from g12421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7751.t1 is derived from g12422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6008096	6009401	.	+	.	Ledus.S5G052900
Ledus.S5	AUGUSTUS	transcript	6008096	6009401	.	+	.	transcript_id "Ledus.S5G052900.t1"; gene_id "Ledus.S5G052900"
Ledus.S5	AUGUSTUS	start_codon	6008096	6008098	.	+	0	transcript_id "Ledus.S5G052900.t1"; gene_id "Ledus.S5G052900"
Ledus.S5	AUGUSTUS	CDS	6008096	6008490	0.4	+	0	transcript_id "Ledus.S5G052900.t1"; gene_id "Ledus.S5G052900"
Ledus.S5	AUGUSTUS	exon	6008096	6008490	.	+	.	transcript_id "Ledus.S5G052900.t1"; gene_id "Ledus.S5G052900"
Ledus.S5	AUGUSTUS	intron	6008491	6008803	.	+	.	transcript_id "Ledus.S5G052900.t1"; gene_id "Ledus.S5G052900"
Ledus.S5	AUGUSTUS	CDS	6008804	6009401	0.96	+	1	transcript_id "Ledus.S5G052900.t1"; gene_id "Ledus.S5G052900"
Ledus.S5	AUGUSTUS	exon	6008804	6009401	.	+	.	transcript_id "Ledus.S5G052900.t1"; gene_id "Ledus.S5G052900"
Ledus.S5	AUGUSTUS	stop_codon	6009402	6009404	.	+	0	transcript_id "Ledus.S5G052900.t1"; gene_id "Ledus.S5G052900"
# This transcript jg1956.t2 is derived from g8819.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1956.t3 is derived from g8819.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1956.t4 is derived from g8819.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1957.t1 is derived from g8820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13815482	13817751	.	-	.	Ledus.S2G183900
Ledus.S2	AUGUSTUS	transcript	13815482	13817751	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	stop_codon	13815479	13815481	.	-	0	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	CDS	13815482	13815516	0.82	-	2	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	exon	13815482	13815516	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	intron	13815517	13815732	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	CDS	13815733	13815792	0.86	-	2	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	exon	13815733	13815792	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	intron	13815793	13816344	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	CDS	13816345	13816437	0.87	-	2	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	exon	13816345	13816437	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	intron	13816438	13816526	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	CDS	13816527	13816727	1	-	2	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	exon	13816527	13816727	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	intron	13816728	13816831	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	CDS	13816832	13816988	0.72	-	0	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	exon	13816832	13816988	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	intron	13816989	13817090	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	CDS	13817091	13817257	0.72	-	2	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	exon	13817091	13817257	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	intron	13817258	13817329	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	CDS	13817330	13817456	1	-	0	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	exon	13817330	13817456	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	intron	13817457	13817619	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	CDS	13817620	13817751	0.67	-	0	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	exon	13817620	13817751	.	-	.	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
Ledus.S2	AUGUSTUS	start_codon	13817749	13817751	.	-	0	transcript_id "Ledus.S2G183900.t1"; gene_id "Ledus.S2G183900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11920.t1 is derived from g5539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7755216	7757189	.	+	.	Ledus.S4G107600
Ledus.S4	AUGUSTUS	transcript	7755216	7757189	.	+	.	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	start_codon	7755216	7755218	.	+	0	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	CDS	7755216	7755848	0.64	+	0	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	exon	7755216	7755848	.	+	.	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	intron	7755849	7755929	.	+	.	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	CDS	7755930	7756012	0.99	+	0	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	exon	7755930	7756012	.	+	.	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	intron	7756013	7756116	.	+	.	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	CDS	7756117	7756237	0.89	+	1	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	exon	7756117	7756237	.	+	.	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	intron	7756238	7756405	.	+	.	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	CDS	7756406	7756579	1	+	0	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	exon	7756406	7756579	.	+	.	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	intron	7756580	7756672	.	+	.	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	CDS	7756673	7756780	1	+	0	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	exon	7756673	7756780	.	+	.	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	intron	7756781	7756877	.	+	.	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	CDS	7756878	7757189	0.93	+	0	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	exon	7756878	7757189	.	+	.	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
Ledus.S4	AUGUSTUS	stop_codon	7757190	7757192	.	+	0	transcript_id "Ledus.S4G107600.t1"; gene_id "Ledus.S4G107600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2389.t1 is derived from g9252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17851203	17851594	.	+	.	Ledus.S2G227100
Ledus.S2	AUGUSTUS	transcript	17851203	17851594	.	+	.	transcript_id "Ledus.S2G227100.t1"; gene_id "Ledus.S2G227100"
Ledus.S2	AUGUSTUS	start_codon	17851203	17851205	.	+	0	transcript_id "Ledus.S2G227100.t1"; gene_id "Ledus.S2G227100"
Ledus.S2	AUGUSTUS	CDS	17851203	17851269	0.99	+	0	transcript_id "Ledus.S2G227100.t1"; gene_id "Ledus.S2G227100"
Ledus.S2	AUGUSTUS	exon	17851203	17851269	.	+	.	transcript_id "Ledus.S2G227100.t1"; gene_id "Ledus.S2G227100"
Ledus.S2	AUGUSTUS	intron	17851270	17851454	.	+	.	transcript_id "Ledus.S2G227100.t1"; gene_id "Ledus.S2G227100"
Ledus.S2	AUGUSTUS	CDS	17851455	17851594	0.92	+	2	transcript_id "Ledus.S2G227100.t1"; gene_id "Ledus.S2G227100"
Ledus.S2	AUGUSTUS	exon	17851455	17851594	.	+	.	transcript_id "Ledus.S2G227100.t1"; gene_id "Ledus.S2G227100"
Ledus.S2	AUGUSTUS	stop_codon	17851595	17851597	.	+	0	transcript_id "Ledus.S2G227100.t1"; gene_id "Ledus.S2G227100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8368.t1 is derived from g13040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11162239	11163190	.	+	.	Ledus.S5G114600
Ledus.S5	AUGUSTUS	transcript	11162239	11163190	.	+	.	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	start_codon	11162239	11162241	.	+	0	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	CDS	11162239	11162282	1	+	0	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	exon	11162239	11162282	.	+	.	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	intron	11162283	11162486	.	+	.	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	CDS	11162487	11162559	1	+	1	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	exon	11162487	11162559	.	+	.	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	intron	11162560	11162660	.	+	.	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	CDS	11162661	11162765	1	+	0	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	exon	11162661	11162765	.	+	.	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	intron	11162766	11162848	.	+	.	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	CDS	11162849	11162971	1	+	0	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	exon	11162849	11162971	.	+	.	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	intron	11162972	11163064	.	+	.	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	CDS	11163065	11163190	1	+	0	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	exon	11163065	11163190	.	+	.	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
Ledus.S5	AUGUSTUS	stop_codon	11163191	11163193	.	+	0	transcript_id "Ledus.S5G114600.t1"; gene_id "Ledus.S5G114600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3303.t1 is derived from g738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7382719	7383975	.	-	.	Ledus.S1G072400
Ledus.S1	AUGUSTUS	transcript	7382719	7383975	.	-	.	transcript_id "Ledus.S1G072400.t1"; gene_id "Ledus.S1G072400"
Ledus.S1	AUGUSTUS	stop_codon	7382716	7382718	.	-	0	transcript_id "Ledus.S1G072400.t1"; gene_id "Ledus.S1G072400"
Ledus.S1	AUGUSTUS	CDS	7382719	7383975	0.91	-	0	transcript_id "Ledus.S1G072400.t1"; gene_id "Ledus.S1G072400"
Ledus.S1	AUGUSTUS	exon	7382719	7383975	.	-	.	transcript_id "Ledus.S1G072400.t1"; gene_id "Ledus.S1G072400"
Ledus.S1	AUGUSTUS	start_codon	7383973	7383975	.	-	0	transcript_id "Ledus.S1G072400.t1"; gene_id "Ledus.S1G072400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10604.t1 is derived from g11634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16314808	16315130	.	-	.	Ledus.S3G208100
Ledus.S3	AUGUSTUS	transcript	16314808	16315130	.	-	.	transcript_id "Ledus.S3G208100.t1"; gene_id "Ledus.S3G208100"
Ledus.S3	AUGUSTUS	stop_codon	16314805	16314807	.	-	0	transcript_id "Ledus.S3G208100.t1"; gene_id "Ledus.S3G208100"
Ledus.S3	AUGUSTUS	CDS	16314808	16314909	0.95	-	0	transcript_id "Ledus.S3G208100.t1"; gene_id "Ledus.S3G208100"
Ledus.S3	AUGUSTUS	exon	16314808	16314909	.	-	.	transcript_id "Ledus.S3G208100.t1"; gene_id "Ledus.S3G208100"
Ledus.S3	AUGUSTUS	intron	16314910	16314971	.	-	.	transcript_id "Ledus.S3G208100.t1"; gene_id "Ledus.S3G208100"
Ledus.S3	AUGUSTUS	CDS	16314972	16315130	0.8	-	0	transcript_id "Ledus.S3G208100.t1"; gene_id "Ledus.S3G208100"
Ledus.S3	AUGUSTUS	exon	16314972	16315130	.	-	.	transcript_id "Ledus.S3G208100.t1"; gene_id "Ledus.S3G208100"
Ledus.S3	AUGUSTUS	start_codon	16315128	16315130	.	-	0	transcript_id "Ledus.S3G208100.t1"; gene_id "Ledus.S3G208100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7431.t1 is derived from g12102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2566394	2566732	.	+	.	Ledus.S5G020900
Ledus.S5	AUGUSTUS	transcript	2566394	2566732	.	+	.	transcript_id "Ledus.S5G020900.t1"; gene_id "Ledus.S5G020900"
Ledus.S5	AUGUSTUS	start_codon	2566394	2566396	.	+	0	transcript_id "Ledus.S5G020900.t1"; gene_id "Ledus.S5G020900"
Ledus.S5	AUGUSTUS	CDS	2566394	2566732	0.63	+	0	transcript_id "Ledus.S5G020900.t1"; gene_id "Ledus.S5G020900"
Ledus.S5	AUGUSTUS	exon	2566394	2566732	.	+	.	transcript_id "Ledus.S5G020900.t1"; gene_id "Ledus.S5G020900"
Ledus.S5	AUGUSTUS	stop_codon	2566733	2566735	.	+	0	transcript_id "Ledus.S5G020900.t1"; gene_id "Ledus.S5G020900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10054.t1 is derived from g11084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12218602	12224180	.	-	.	Ledus.S3G153100
Ledus.S3	AUGUSTUS	transcript	12218602	12224180	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	stop_codon	12218599	12218601	.	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12218602	12219113	1	-	2	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12218602	12219113	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12219114	12219256	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12219257	12219320	1	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12219257	12219320	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12219321	12219416	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12219417	12219497	1	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12219417	12219497	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12219498	12219593	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12219594	12219656	1	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12219594	12219656	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12219657	12219745	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12219746	12219848	1	-	1	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12219746	12219848	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12219849	12219973	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12219974	12220102	1	-	1	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12219974	12220102	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12220103	12220241	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12220242	12220288	1	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12220242	12220288	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12220289	12220430	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12220431	12220535	1	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12220431	12220535	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12220536	12220717	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12220718	12220840	1	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12220718	12220840	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12220841	12220990	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12220991	12221086	1	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12220991	12221086	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12221087	12221230	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12221231	12221287	1	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12221231	12221287	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12221288	12221415	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12221416	12221446	1	-	1	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12221416	12221446	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12221447	12221561	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12221562	12221663	0.94	-	1	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12221562	12221663	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12221664	12221753	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12221754	12221832	1	-	2	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12221754	12221832	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12221833	12221911	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12221912	12222042	1	-	1	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12221912	12222042	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12222043	12222271	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12222272	12222411	0.82	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12222272	12222411	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12222412	12222577	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12222578	12222671	0.94	-	1	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12222578	12222671	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12222672	12222746	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12222747	12222864	1	-	2	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12222747	12222864	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12222865	12222947	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12222948	12223046	1	-	2	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12222948	12223046	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12223047	12223125	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12223126	12223327	1	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12223126	12223327	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12223328	12223412	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12223413	12223513	1	-	2	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12223413	12223513	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12223514	12223641	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12223642	12223681	1	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12223642	12223681	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12223682	12223773	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12223774	12223821	1	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12223774	12223821	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12223822	12223895	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12223896	12224018	0.99	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12223896	12224018	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	intron	12224019	12224120	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	CDS	12224121	12224180	0.99	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	exon	12224121	12224180	.	-	.	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
Ledus.S3	AUGUSTUS	start_codon	12224178	12224180	.	-	0	transcript_id "Ledus.S3G153100.t1"; gene_id "Ledus.S3G153100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4355.t1 is derived from g1791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16554870	16556241	.	+	.	Ledus.S1G177600
Ledus.S1	AUGUSTUS	transcript	16554870	16556241	.	+	.	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	start_codon	16554870	16554872	.	+	0	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	CDS	16554870	16555021	0.56	+	0	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	exon	16554870	16555021	.	+	.	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	intron	16555022	16555191	.	+	.	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	CDS	16555192	16555211	0.58	+	1	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	exon	16555192	16555211	.	+	.	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	intron	16555212	16555653	.	+	.	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	CDS	16555654	16555723	0.89	+	2	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	exon	16555654	16555723	.	+	.	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	intron	16555724	16555829	.	+	.	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	CDS	16555830	16555896	0.94	+	1	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	exon	16555830	16555896	.	+	.	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	intron	16555897	16556235	.	+	.	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	CDS	16556236	16556241	0.94	+	0	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	exon	16556236	16556241	.	+	.	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
Ledus.S1	AUGUSTUS	stop_codon	16556242	16556244	.	+	0	transcript_id "Ledus.S1G177600.t1"; gene_id "Ledus.S1G177600"
# This transcript jg8024.t2 is derived from g12695.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8025.t1 is derived from g12696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8578499	8580538	.	+	.	Ledus.S5G080300
Ledus.S5	AUGUSTUS	transcript	8578499	8580538	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	start_codon	8578499	8578501	.	+	0	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	CDS	8578499	8578534	0.51	+	0	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	exon	8578499	8578534	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	intron	8578535	8578617	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	CDS	8578618	8578650	0.65	+	0	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	exon	8578618	8578650	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	intron	8578651	8578737	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	CDS	8578738	8578826	0.63	+	0	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	exon	8578738	8578826	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	intron	8578827	8578913	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	CDS	8578914	8579066	0.98	+	1	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	exon	8578914	8579066	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	intron	8579067	8579185	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	CDS	8579186	8579237	0.95	+	1	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	exon	8579186	8579237	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	intron	8579238	8579320	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	CDS	8579321	8579454	1	+	0	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	exon	8579321	8579454	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	intron	8579455	8579557	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	CDS	8579558	8579672	0.97	+	1	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	exon	8579558	8579672	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	intron	8579673	8579772	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	CDS	8579773	8579859	1	+	0	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	exon	8579773	8579859	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	intron	8579860	8580120	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	CDS	8580121	8580169	1	+	0	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	exon	8580121	8580169	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	intron	8580170	8580282	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	CDS	8580283	8580367	0.98	+	2	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	exon	8580283	8580367	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	intron	8580368	8580462	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	CDS	8580463	8580538	1	+	1	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	exon	8580463	8580538	.	+	.	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
Ledus.S5	AUGUSTUS	stop_codon	8580539	8580541	.	+	0	transcript_id "Ledus.S5G080300.t1"; gene_id "Ledus.S5G080300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11373.t1 is derived from g4991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3876795	3877696	.	+	.	Ledus.S4G052900
Ledus.S4	AUGUSTUS	transcript	3876795	3877696	.	+	.	transcript_id "Ledus.S4G052900.t1"; gene_id "Ledus.S4G052900"
Ledus.S4	AUGUSTUS	start_codon	3876795	3876797	.	+	0	transcript_id "Ledus.S4G052900.t1"; gene_id "Ledus.S4G052900"
Ledus.S4	AUGUSTUS	CDS	3876795	3877251	0.91	+	0	transcript_id "Ledus.S4G052900.t1"; gene_id "Ledus.S4G052900"
Ledus.S4	AUGUSTUS	exon	3876795	3877251	.	+	.	transcript_id "Ledus.S4G052900.t1"; gene_id "Ledus.S4G052900"
Ledus.S4	AUGUSTUS	intron	3877252	3877331	.	+	.	transcript_id "Ledus.S4G052900.t1"; gene_id "Ledus.S4G052900"
Ledus.S4	AUGUSTUS	CDS	3877332	3877466	1	+	2	transcript_id "Ledus.S4G052900.t1"; gene_id "Ledus.S4G052900"
Ledus.S4	AUGUSTUS	exon	3877332	3877466	.	+	.	transcript_id "Ledus.S4G052900.t1"; gene_id "Ledus.S4G052900"
Ledus.S4	AUGUSTUS	intron	3877467	3877544	.	+	.	transcript_id "Ledus.S4G052900.t1"; gene_id "Ledus.S4G052900"
Ledus.S4	AUGUSTUS	CDS	3877545	3877696	1	+	2	transcript_id "Ledus.S4G052900.t1"; gene_id "Ledus.S4G052900"
Ledus.S4	AUGUSTUS	exon	3877545	3877696	.	+	.	transcript_id "Ledus.S4G052900.t1"; gene_id "Ledus.S4G052900"
Ledus.S4	AUGUSTUS	stop_codon	3877697	3877699	.	+	0	transcript_id "Ledus.S4G052900.t1"; gene_id "Ledus.S4G052900"
# This transcript jg8562.t2 is derived from g9592.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8563.t1 is derived from g9593.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	194928	195131	.	-	.	Ledus.S3G004000
Ledus.S3	AUGUSTUS	transcript	194928	195131	.	-	.	transcript_id "Ledus.S3G004000.t1"; gene_id "Ledus.S3G004000"
Ledus.S3	AUGUSTUS	stop_codon	194925	194927	.	-	0	transcript_id "Ledus.S3G004000.t1"; gene_id "Ledus.S3G004000"
Ledus.S3	AUGUSTUS	CDS	194928	195131	0.98	-	0	transcript_id "Ledus.S3G004000.t1"; gene_id "Ledus.S3G004000"
Ledus.S3	AUGUSTUS	exon	194928	195131	.	-	.	transcript_id "Ledus.S3G004000.t1"; gene_id "Ledus.S3G004000"
Ledus.S3	AUGUSTUS	start_codon	195129	195131	.	-	0	transcript_id "Ledus.S3G004000.t1"; gene_id "Ledus.S3G004000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10442.t1 is derived from g11472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15192582	15193980	.	-	.	Ledus.S3G191900
Ledus.S3	AUGUSTUS	transcript	15192582	15193980	.	-	.	transcript_id "Ledus.S3G191900.t1"; gene_id "Ledus.S3G191900"
Ledus.S3	AUGUSTUS	stop_codon	15192579	15192581	.	-	0	transcript_id "Ledus.S3G191900.t1"; gene_id "Ledus.S3G191900"
Ledus.S3	AUGUSTUS	CDS	15192582	15193334	0.97	-	0	transcript_id "Ledus.S3G191900.t1"; gene_id "Ledus.S3G191900"
Ledus.S3	AUGUSTUS	exon	15192582	15193334	.	-	.	transcript_id "Ledus.S3G191900.t1"; gene_id "Ledus.S3G191900"
Ledus.S3	AUGUSTUS	intron	15193335	15193427	.	-	.	transcript_id "Ledus.S3G191900.t1"; gene_id "Ledus.S3G191900"
Ledus.S3	AUGUSTUS	CDS	15193428	15193717	1	-	2	transcript_id "Ledus.S3G191900.t1"; gene_id "Ledus.S3G191900"
Ledus.S3	AUGUSTUS	exon	15193428	15193717	.	-	.	transcript_id "Ledus.S3G191900.t1"; gene_id "Ledus.S3G191900"
Ledus.S3	AUGUSTUS	intron	15193718	15193787	.	-	.	transcript_id "Ledus.S3G191900.t1"; gene_id "Ledus.S3G191900"
Ledus.S3	AUGUSTUS	CDS	15193788	15193980	0.46	-	0	transcript_id "Ledus.S3G191900.t1"; gene_id "Ledus.S3G191900"
Ledus.S3	AUGUSTUS	exon	15193788	15193980	.	-	.	transcript_id "Ledus.S3G191900.t1"; gene_id "Ledus.S3G191900"
Ledus.S3	AUGUSTUS	start_codon	15193978	15193980	.	-	0	transcript_id "Ledus.S3G191900.t1"; gene_id "Ledus.S3G191900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8028.t1 is derived from g12699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8588979	8590362	.	+	.	Ledus.S5G080600
Ledus.S5	AUGUSTUS	transcript	8588979	8590362	.	+	.	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	start_codon	8588979	8588981	.	+	0	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	CDS	8588979	8589440	0.99	+	0	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	exon	8588979	8589440	.	+	.	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	intron	8589441	8589512	.	+	.	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	CDS	8589513	8589680	0.99	+	0	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	exon	8589513	8589680	.	+	.	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	intron	8589681	8589761	.	+	.	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	CDS	8589762	8589953	1	+	0	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	exon	8589762	8589953	.	+	.	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	intron	8589954	8590030	.	+	.	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	CDS	8590031	8590147	1	+	0	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	exon	8590031	8590147	.	+	.	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	intron	8590148	8590242	.	+	.	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	CDS	8590243	8590362	0.99	+	0	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	exon	8590243	8590362	.	+	.	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
Ledus.S5	AUGUSTUS	stop_codon	8590363	8590365	.	+	0	transcript_id "Ledus.S5G080600.t1"; gene_id "Ledus.S5G080600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12297.t1 is derived from g5917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11093462	11096480	.	-	.	Ledus.S4G145300
Ledus.S4	AUGUSTUS	transcript	11093462	11096480	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	stop_codon	11093459	11093461	.	-	0	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	CDS	11093462	11093615	0.44	-	1	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	exon	11093462	11093615	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	intron	11093616	11093698	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	CDS	11093699	11093760	0.67	-	0	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	exon	11093699	11093760	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	intron	11093761	11093842	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	CDS	11093843	11095162	1	-	0	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	exon	11093843	11095162	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	intron	11095163	11095279	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	CDS	11095280	11095356	1	-	2	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	exon	11095280	11095356	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	intron	11095357	11095471	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	CDS	11095472	11095861	1	-	2	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	exon	11095472	11095861	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	intron	11095862	11095979	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	CDS	11095980	11096132	1	-	2	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	exon	11095980	11096132	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	intron	11096133	11096218	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	CDS	11096219	11096480	0.59	-	0	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	exon	11096219	11096480	.	-	.	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
Ledus.S4	AUGUSTUS	start_codon	11096478	11096480	.	-	0	transcript_id "Ledus.S4G145300.t1"; gene_id "Ledus.S4G145300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12204.t1 is derived from g5823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10352138	10352650	.	-	.	Ledus.S4G136000
Ledus.S4	AUGUSTUS	transcript	10352138	10352650	.	-	.	transcript_id "Ledus.S4G136000.t1"; gene_id "Ledus.S4G136000"
Ledus.S4	AUGUSTUS	stop_codon	10352135	10352137	.	-	0	transcript_id "Ledus.S4G136000.t1"; gene_id "Ledus.S4G136000"
Ledus.S4	AUGUSTUS	CDS	10352138	10352144	0.26	-	1	transcript_id "Ledus.S4G136000.t1"; gene_id "Ledus.S4G136000"
Ledus.S4	AUGUSTUS	exon	10352138	10352144	.	-	.	transcript_id "Ledus.S4G136000.t1"; gene_id "Ledus.S4G136000"
Ledus.S4	AUGUSTUS	intron	10352145	10352244	.	-	.	transcript_id "Ledus.S4G136000.t1"; gene_id "Ledus.S4G136000"
Ledus.S4	AUGUSTUS	CDS	10352245	10352392	0.79	-	2	transcript_id "Ledus.S4G136000.t1"; gene_id "Ledus.S4G136000"
Ledus.S4	AUGUSTUS	exon	10352245	10352392	.	-	.	transcript_id "Ledus.S4G136000.t1"; gene_id "Ledus.S4G136000"
Ledus.S4	AUGUSTUS	intron	10352393	10352472	.	-	.	transcript_id "Ledus.S4G136000.t1"; gene_id "Ledus.S4G136000"
Ledus.S4	AUGUSTUS	CDS	10352473	10352650	0.5	-	0	transcript_id "Ledus.S4G136000.t1"; gene_id "Ledus.S4G136000"
Ledus.S4	AUGUSTUS	exon	10352473	10352650	.	-	.	transcript_id "Ledus.S4G136000.t1"; gene_id "Ledus.S4G136000"
Ledus.S4	AUGUSTUS	start_codon	10352648	10352650	.	-	0	transcript_id "Ledus.S4G136000.t1"; gene_id "Ledus.S4G136000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg962.t1 is derived from g7823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6367496	6368431	.	-	.	Ledus.S2G084400
Ledus.S2	AUGUSTUS	transcript	6367496	6368431	.	-	.	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	stop_codon	6367493	6367495	.	-	0	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	CDS	6367496	6367669	1	-	0	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	exon	6367496	6367669	.	-	.	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	intron	6367670	6367765	.	-	.	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	CDS	6367766	6367902	1	-	2	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	exon	6367766	6367902	.	-	.	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	intron	6367903	6367980	.	-	.	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	CDS	6367981	6368117	1	-	1	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	exon	6367981	6368117	.	-	.	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	intron	6368118	6368204	.	-	.	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	CDS	6368205	6368431	0.95	-	0	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	exon	6368205	6368431	.	-	.	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
Ledus.S2	AUGUSTUS	start_codon	6368429	6368431	.	-	0	transcript_id "Ledus.S2G084400.t1"; gene_id "Ledus.S2G084400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg92.t1 is derived from g9505.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	386221	388031	.	+	.	Ledus.C8G005200
Ledus.C8	AUGUSTUS	transcript	386246	387036	.	+	.	transcript_id "Ledus.C8G005200.t1"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	start_codon	386246	386248	.	+	0	transcript_id "Ledus.C8G005200.t1"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	386246	386548	1	+	0	transcript_id "Ledus.C8G005200.t1"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	386246	386548	.	+	.	transcript_id "Ledus.C8G005200.t1"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	386549	386622	.	+	.	transcript_id "Ledus.C8G005200.t1"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	386623	386868	1	+	0	transcript_id "Ledus.C8G005200.t1"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	386623	386868	.	+	.	transcript_id "Ledus.C8G005200.t1"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	386869	386949	.	+	.	transcript_id "Ledus.C8G005200.t1"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	386950	387036	0.92	+	0	transcript_id "Ledus.C8G005200.t1"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	386950	387036	.	+	.	transcript_id "Ledus.C8G005200.t1"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	stop_codon	387037	387039	.	+	0	transcript_id "Ledus.C8G005200.t1"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	transcript	386221	387036	.	+	.	transcript_id "Ledus.C8G005200.t2"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	start_codon	386221	386223	.	+	0	transcript_id "Ledus.C8G005200.t2"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	386221	386548	0.92	+	0	transcript_id "Ledus.C8G005200.t2"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	386221	386548	.	+	.	transcript_id "Ledus.C8G005200.t2"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	386549	386617	.	+	.	transcript_id "Ledus.C8G005200.t2"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	386618	386868	1	+	2	transcript_id "Ledus.C8G005200.t2"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	386618	386868	.	+	.	transcript_id "Ledus.C8G005200.t2"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	386869	386949	.	+	.	transcript_id "Ledus.C8G005200.t2"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	386950	387036	0.78	+	0	transcript_id "Ledus.C8G005200.t2"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	386950	387036	.	+	.	transcript_id "Ledus.C8G005200.t2"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	stop_codon	387037	387039	.	+	0	transcript_id "Ledus.C8G005200.t2"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	transcript	387275	388031	.	+	.	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	start_codon	387275	387277	.	+	0	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	387275	387371	0.67	+	0	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	387275	387371	.	+	.	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	387372	387465	.	+	.	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	387466	387566	0.92	+	2	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	387466	387566	.	+	.	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	387567	387672	.	+	.	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	387673	387753	0.93	+	0	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	387673	387753	.	+	.	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	387754	387836	.	+	.	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	387837	388031	0.99	+	0	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	387837	388031	.	+	.	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	stop_codon	388032	388034	.	+	0	transcript_id "Ledus.C8G005200.t3"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	transcript	386246	388031	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	start_codon	386246	386248	.	+	0	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	386246	386548	1	+	0	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	386246	386548	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	386549	386622	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	386623	386868	1	+	0	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	386623	386868	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	386869	386949	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	386950	386985	0.49	+	0	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	386950	386985	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	386986	387044	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	387045	387098	0.6	+	0	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	387045	387098	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	387099	387170	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	387171	387371	0.78	+	0	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	387171	387371	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	387372	387506	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	387507	387566	0.44	+	0	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	387507	387566	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	387567	387672	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	387673	387753	1	+	0	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	387673	387753	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	intron	387754	387836	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	CDS	387837	388031	0.99	+	0	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	exon	387837	388031	.	+	.	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
Ledus.C8	AUGUSTUS	stop_codon	388032	388034	.	+	0	transcript_id "Ledus.C8G005200.t4"; gene_id "Ledus.C8G005200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6858.t1 is derived from g4302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34766481	34766984	.	+	.	Ledus.S1G427900
Ledus.S1	AUGUSTUS	transcript	34766481	34766984	.	+	.	transcript_id "Ledus.S1G427900.t1"; gene_id "Ledus.S1G427900"
Ledus.S1	AUGUSTUS	start_codon	34766481	34766483	.	+	0	transcript_id "Ledus.S1G427900.t1"; gene_id "Ledus.S1G427900"
Ledus.S1	AUGUSTUS	CDS	34766481	34766984	0.98	+	0	transcript_id "Ledus.S1G427900.t1"; gene_id "Ledus.S1G427900"
Ledus.S1	AUGUSTUS	exon	34766481	34766984	.	+	.	transcript_id "Ledus.S1G427900.t1"; gene_id "Ledus.S1G427900"
Ledus.S1	AUGUSTUS	stop_codon	34766985	34766987	.	+	0	transcript_id "Ledus.S1G427900.t1"; gene_id "Ledus.S1G427900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg400.t1 is derived from g7261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2226501	2227976	.	+	.	Ledus.S2G028200
Ledus.S2	AUGUSTUS	transcript	2226501	2227976	.	+	.	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	start_codon	2226501	2226503	.	+	0	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	CDS	2226501	2226852	0.88	+	0	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	exon	2226501	2226852	.	+	.	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	intron	2226853	2226944	.	+	.	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	CDS	2226945	2227056	1	+	2	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	exon	2226945	2227056	.	+	.	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	intron	2227057	2227248	.	+	.	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	CDS	2227249	2227425	1	+	1	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	exon	2227249	2227425	.	+	.	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	intron	2227426	2227644	.	+	.	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	CDS	2227645	2227771	1	+	1	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	exon	2227645	2227771	.	+	.	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	intron	2227772	2227865	.	+	.	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	CDS	2227866	2227976	0.95	+	0	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	exon	2227866	2227976	.	+	.	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
Ledus.S2	AUGUSTUS	stop_codon	2227977	2227979	.	+	0	transcript_id "Ledus.S2G028200.t1"; gene_id "Ledus.S2G028200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12481.t1 is derived from g6102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12309211	12311315	.	+	.	Ledus.S4G163700
Ledus.S4	AUGUSTUS	transcript	12309211	12311315	.	+	.	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	start_codon	12309211	12309213	.	+	0	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	CDS	12309211	12310050	0.33	+	0	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	exon	12309211	12310050	.	+	.	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	intron	12310051	12310147	.	+	.	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	CDS	12310148	12310281	1	+	0	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	exon	12310148	12310281	.	+	.	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	intron	12310282	12310361	.	+	.	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	CDS	12310362	12310475	1	+	1	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	exon	12310362	12310475	.	+	.	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	intron	12310476	12310568	.	+	.	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	CDS	12310569	12310737	1	+	1	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	exon	12310569	12310737	.	+	.	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	intron	12310738	12310820	.	+	.	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	CDS	12310821	12310889	1	+	0	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	exon	12310821	12310889	.	+	.	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	intron	12310890	12310982	.	+	.	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	CDS	12310983	12311315	1	+	0	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	exon	12310983	12311315	.	+	.	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
Ledus.S4	AUGUSTUS	stop_codon	12311316	12311318	.	+	0	transcript_id "Ledus.S4G163700.t1"; gene_id "Ledus.S4G163700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11593.t1 is derived from g5211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5431127	5432106	.	-	.	Ledus.S4G074900
Ledus.S4	AUGUSTUS	transcript	5431127	5432106	.	-	.	transcript_id "Ledus.S4G074900.t1"; gene_id "Ledus.S4G074900"
Ledus.S4	AUGUSTUS	stop_codon	5431124	5431126	.	-	0	transcript_id "Ledus.S4G074900.t1"; gene_id "Ledus.S4G074900"
Ledus.S4	AUGUSTUS	CDS	5431127	5431334	0.56	-	1	transcript_id "Ledus.S4G074900.t1"; gene_id "Ledus.S4G074900"
Ledus.S4	AUGUSTUS	exon	5431127	5431334	.	-	.	transcript_id "Ledus.S4G074900.t1"; gene_id "Ledus.S4G074900"
Ledus.S4	AUGUSTUS	intron	5431335	5431462	.	-	.	transcript_id "Ledus.S4G074900.t1"; gene_id "Ledus.S4G074900"
Ledus.S4	AUGUSTUS	CDS	5431463	5431674	0.43	-	0	transcript_id "Ledus.S4G074900.t1"; gene_id "Ledus.S4G074900"
Ledus.S4	AUGUSTUS	exon	5431463	5431674	.	-	.	transcript_id "Ledus.S4G074900.t1"; gene_id "Ledus.S4G074900"
Ledus.S4	AUGUSTUS	intron	5431675	5431755	.	-	.	transcript_id "Ledus.S4G074900.t1"; gene_id "Ledus.S4G074900"
Ledus.S4	AUGUSTUS	CDS	5431756	5432106	0.82	-	0	transcript_id "Ledus.S4G074900.t1"; gene_id "Ledus.S4G074900"
Ledus.S4	AUGUSTUS	exon	5431756	5432106	.	-	.	transcript_id "Ledus.S4G074900.t1"; gene_id "Ledus.S4G074900"
Ledus.S4	AUGUSTUS	start_codon	5432104	5432106	.	-	0	transcript_id "Ledus.S4G074900.t1"; gene_id "Ledus.S4G074900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1440.t1 is derived from g8301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10145328	10146161	.	-	.	Ledus.S2G132200
Ledus.S2	AUGUSTUS	transcript	10145328	10146161	.	-	.	transcript_id "Ledus.S2G132200.t1"; gene_id "Ledus.S2G132200"
Ledus.S2	AUGUSTUS	stop_codon	10145325	10145327	.	-	0	transcript_id "Ledus.S2G132200.t1"; gene_id "Ledus.S2G132200"
Ledus.S2	AUGUSTUS	CDS	10145328	10146161	0.77	-	0	transcript_id "Ledus.S2G132200.t1"; gene_id "Ledus.S2G132200"
Ledus.S2	AUGUSTUS	exon	10145328	10146161	.	-	.	transcript_id "Ledus.S2G132200.t1"; gene_id "Ledus.S2G132200"
Ledus.S2	AUGUSTUS	start_codon	10146159	10146161	.	-	0	transcript_id "Ledus.S2G132200.t1"; gene_id "Ledus.S2G132200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2764.t1 is derived from g198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3381400	3383080	.	+	.	Ledus.S1G018500
Ledus.S1	AUGUSTUS	transcript	3381400	3383080	.	+	.	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	start_codon	3381400	3381402	.	+	0	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	CDS	3381400	3381483	0.96	+	0	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	exon	3381400	3381483	.	+	.	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	intron	3381484	3381565	.	+	.	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	CDS	3381566	3381835	1	+	0	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	exon	3381566	3381835	.	+	.	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	intron	3381836	3382514	.	+	.	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	CDS	3382515	3382641	0.99	+	0	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	exon	3382515	3382641	.	+	.	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	intron	3382642	3382766	.	+	.	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	CDS	3382767	3383080	0.99	+	2	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	exon	3382767	3383080	.	+	.	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	stop_codon	3383081	3383083	.	+	0	transcript_id "Ledus.S1G018500.t1"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	transcript	3381449	3383080	.	+	.	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	start_codon	3381449	3381451	.	+	0	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	CDS	3381449	3381483	0.62	+	0	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	exon	3381449	3381483	.	+	.	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	intron	3381484	3381573	.	+	.	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	CDS	3381574	3381835	1	+	1	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	exon	3381574	3381835	.	+	.	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	intron	3381836	3382514	.	+	.	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	CDS	3382515	3382641	1	+	0	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	exon	3382515	3382641	.	+	.	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	intron	3382642	3382766	.	+	.	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	CDS	3382767	3383080	1	+	2	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	exon	3382767	3383080	.	+	.	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
Ledus.S1	AUGUSTUS	stop_codon	3383081	3383083	.	+	0	transcript_id "Ledus.S1G018500.t2"; gene_id "Ledus.S1G018500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10675.t1 is derived from g11705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17046480	17047441	.	+	.	Ledus.S3G215200
Ledus.S3	AUGUSTUS	transcript	17046480	17047441	.	+	.	transcript_id "Ledus.S3G215200.t1"; gene_id "Ledus.S3G215200"
Ledus.S3	AUGUSTUS	start_codon	17046480	17046482	.	+	0	transcript_id "Ledus.S3G215200.t1"; gene_id "Ledus.S3G215200"
Ledus.S3	AUGUSTUS	CDS	17046480	17046962	0.64	+	0	transcript_id "Ledus.S3G215200.t1"; gene_id "Ledus.S3G215200"
Ledus.S3	AUGUSTUS	exon	17046480	17046962	.	+	.	transcript_id "Ledus.S3G215200.t1"; gene_id "Ledus.S3G215200"
Ledus.S3	AUGUSTUS	intron	17046963	17047044	.	+	.	transcript_id "Ledus.S3G215200.t1"; gene_id "Ledus.S3G215200"
Ledus.S3	AUGUSTUS	CDS	17047045	17047293	1	+	0	transcript_id "Ledus.S3G215200.t1"; gene_id "Ledus.S3G215200"
Ledus.S3	AUGUSTUS	exon	17047045	17047293	.	+	.	transcript_id "Ledus.S3G215200.t1"; gene_id "Ledus.S3G215200"
Ledus.S3	AUGUSTUS	intron	17047294	17047381	.	+	.	transcript_id "Ledus.S3G215200.t1"; gene_id "Ledus.S3G215200"
Ledus.S3	AUGUSTUS	CDS	17047382	17047441	0.69	+	0	transcript_id "Ledus.S3G215200.t1"; gene_id "Ledus.S3G215200"
Ledus.S3	AUGUSTUS	exon	17047382	17047441	.	+	.	transcript_id "Ledus.S3G215200.t1"; gene_id "Ledus.S3G215200"
Ledus.S3	AUGUSTUS	stop_codon	17047442	17047444	.	+	0	transcript_id "Ledus.S3G215200.t1"; gene_id "Ledus.S3G215200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4022.t1 is derived from g1458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14233481	14234380	.	+	.	Ledus.S1G144300
Ledus.S1	AUGUSTUS	transcript	14233481	14234380	.	+	.	transcript_id "Ledus.S1G144300.t1"; gene_id "Ledus.S1G144300"
Ledus.S1	AUGUSTUS	start_codon	14233481	14233483	.	+	0	transcript_id "Ledus.S1G144300.t1"; gene_id "Ledus.S1G144300"
Ledus.S1	AUGUSTUS	CDS	14233481	14234380	0.99	+	0	transcript_id "Ledus.S1G144300.t1"; gene_id "Ledus.S1G144300"
Ledus.S1	AUGUSTUS	exon	14233481	14234380	.	+	.	transcript_id "Ledus.S1G144300.t1"; gene_id "Ledus.S1G144300"
Ledus.S1	AUGUSTUS	stop_codon	14234381	14234383	.	+	0	transcript_id "Ledus.S1G144300.t1"; gene_id "Ledus.S1G144300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5106.t1 is derived from g2545.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21754351	21755860	.	+	.	Ledus.S1G252700
Ledus.S1	AUGUSTUS	transcript	21754351	21755860	.	+	.	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	start_codon	21754351	21754353	.	+	0	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	CDS	21754351	21755029	0.57	+	0	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	exon	21754351	21755029	.	+	.	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	intron	21755030	21755184	.	+	.	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	CDS	21755185	21755326	0.57	+	2	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	exon	21755185	21755326	.	+	.	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	intron	21755327	21755562	.	+	.	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	CDS	21755563	21755661	0.63	+	1	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	exon	21755563	21755661	.	+	.	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	intron	21755662	21755746	.	+	.	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	CDS	21755747	21755764	0.67	+	1	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	exon	21755747	21755764	.	+	.	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	intron	21755765	21755847	.	+	.	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	CDS	21755848	21755860	0.6	+	1	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	exon	21755848	21755860	.	+	.	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	stop_codon	21755861	21755863	.	+	0	transcript_id "Ledus.S1G252700.t1"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	transcript	21754351	21755860	.	+	.	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	start_codon	21754351	21754353	.	+	0	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	CDS	21754351	21755029	0.53	+	0	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	exon	21754351	21755029	.	+	.	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	intron	21755030	21755184	.	+	.	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	CDS	21755185	21755326	0.53	+	2	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	exon	21755185	21755326	.	+	.	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	intron	21755327	21755574	.	+	.	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	CDS	21755575	21755661	0.49	+	1	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	exon	21755575	21755661	.	+	.	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	intron	21755662	21755746	.	+	.	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	CDS	21755747	21755764	0.5	+	1	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	exon	21755747	21755764	.	+	.	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	intron	21755765	21755847	.	+	.	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	CDS	21755848	21755860	0.4	+	1	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	exon	21755848	21755860	.	+	.	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
Ledus.S1	AUGUSTUS	stop_codon	21755861	21755863	.	+	0	transcript_id "Ledus.S1G252700.t2"; gene_id "Ledus.S1G252700"
# This transcript jg10060.t2 is derived from g11090.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10061.t1 is derived from g11091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12334179	12336906	.	-	.	Ledus.S3G153800
Ledus.S3	AUGUSTUS	transcript	12334179	12336906	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	stop_codon	12334176	12334178	.	-	0	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12334179	12334268	1	-	0	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12334179	12334268	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12334269	12334672	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12334673	12334747	1	-	0	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12334673	12334747	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12334748	12334838	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12334839	12334911	1	-	1	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12334839	12334911	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12334912	12335037	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12335038	12335177	1	-	0	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12335038	12335177	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12335178	12335334	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12335335	12335460	1	-	0	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12335335	12335460	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12335461	12335550	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12335551	12335606	1	-	2	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12335551	12335606	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12335607	12335705	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12335706	12335784	1	-	0	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12335706	12335784	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12335785	12335948	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12335949	12336086	1	-	0	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12335949	12336086	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12336087	12336180	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12336181	12336291	0.99	-	0	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12336181	12336291	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12336292	12336394	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12336395	12336452	0.98	-	1	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12336395	12336452	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12336453	12336663	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12336664	12336728	1	-	0	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12336664	12336728	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12336729	12336822	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12336823	12336906	0.78	-	0	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12336823	12336906	.	-	.	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	start_codon	12336904	12336906	.	-	0	transcript_id "Ledus.S3G153800.t1"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	transcript	12334267	12336906	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	stop_codon	12334264	12334266	.	-	0	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12334267	12334268	0.56	-	2	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12334267	12334268	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12334269	12334500	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12334501	12334576	0.56	-	0	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12334501	12334576	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12334577	12334672	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12334673	12334747	1	-	0	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12334673	12334747	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12334748	12334838	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12334839	12334911	1	-	1	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12334839	12334911	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12334912	12335037	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12335038	12335177	1	-	0	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12335038	12335177	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12335178	12335334	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12335335	12335460	1	-	0	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12335335	12335460	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12335461	12335550	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12335551	12335606	1	-	2	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12335551	12335606	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12335607	12335705	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12335706	12335784	1	-	0	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12335706	12335784	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12335785	12335948	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12335949	12336086	1	-	0	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12335949	12336086	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12336087	12336180	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12336181	12336291	0.99	-	0	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12336181	12336291	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12336292	12336394	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12336395	12336452	0.99	-	1	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12336395	12336452	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12336453	12336663	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12336664	12336728	1	-	0	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12336664	12336728	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	intron	12336729	12336822	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	CDS	12336823	12336906	0.74	-	0	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	exon	12336823	12336906	.	-	.	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
Ledus.S3	AUGUSTUS	start_codon	12336904	12336906	.	-	0	transcript_id "Ledus.S3G153800.t2"; gene_id "Ledus.S3G153800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg363.t1 is derived from g7224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1943704	1943925	.	+	.	Ledus.S2G024500
Ledus.S2	AUGUSTUS	transcript	1943704	1943925	.	+	.	transcript_id "Ledus.S2G024500.t1"; gene_id "Ledus.S2G024500"
Ledus.S2	AUGUSTUS	start_codon	1943704	1943706	.	+	0	transcript_id "Ledus.S2G024500.t1"; gene_id "Ledus.S2G024500"
Ledus.S2	AUGUSTUS	CDS	1943704	1943925	0.84	+	0	transcript_id "Ledus.S2G024500.t1"; gene_id "Ledus.S2G024500"
Ledus.S2	AUGUSTUS	exon	1943704	1943925	.	+	.	transcript_id "Ledus.S2G024500.t1"; gene_id "Ledus.S2G024500"
Ledus.S2	AUGUSTUS	stop_codon	1943926	1943928	.	+	0	transcript_id "Ledus.S2G024500.t1"; gene_id "Ledus.S2G024500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12195.t1 is derived from g5814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10242691	10243316	.	-	.	Ledus.S4G135100
Ledus.S4	AUGUSTUS	transcript	10242691	10243316	.	-	.	transcript_id "Ledus.S4G135100.t1"; gene_id "Ledus.S4G135100"
Ledus.S4	AUGUSTUS	stop_codon	10242688	10242690	.	-	0	transcript_id "Ledus.S4G135100.t1"; gene_id "Ledus.S4G135100"
Ledus.S4	AUGUSTUS	CDS	10242691	10242765	1	-	0	transcript_id "Ledus.S4G135100.t1"; gene_id "Ledus.S4G135100"
Ledus.S4	AUGUSTUS	exon	10242691	10242765	.	-	.	transcript_id "Ledus.S4G135100.t1"; gene_id "Ledus.S4G135100"
Ledus.S4	AUGUSTUS	intron	10242766	10242847	.	-	.	transcript_id "Ledus.S4G135100.t1"; gene_id "Ledus.S4G135100"
Ledus.S4	AUGUSTUS	CDS	10242848	10242937	1	-	0	transcript_id "Ledus.S4G135100.t1"; gene_id "Ledus.S4G135100"
Ledus.S4	AUGUSTUS	exon	10242848	10242937	.	-	.	transcript_id "Ledus.S4G135100.t1"; gene_id "Ledus.S4G135100"
Ledus.S4	AUGUSTUS	intron	10242938	10243028	.	-	.	transcript_id "Ledus.S4G135100.t1"; gene_id "Ledus.S4G135100"
Ledus.S4	AUGUSTUS	CDS	10243029	10243316	0.68	-	0	transcript_id "Ledus.S4G135100.t1"; gene_id "Ledus.S4G135100"
Ledus.S4	AUGUSTUS	exon	10243029	10243316	.	-	.	transcript_id "Ledus.S4G135100.t1"; gene_id "Ledus.S4G135100"
Ledus.S4	AUGUSTUS	start_codon	10243314	10243316	.	-	0	transcript_id "Ledus.S4G135100.t1"; gene_id "Ledus.S4G135100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2419.t1 is derived from g9282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18021206	18022423	.	-	.	Ledus.S2G230100
Ledus.S2	AUGUSTUS	transcript	18021206	18022423	.	-	.	transcript_id "Ledus.S2G230100.t1"; gene_id "Ledus.S2G230100"
Ledus.S2	AUGUSTUS	stop_codon	18021203	18021205	.	-	0	transcript_id "Ledus.S2G230100.t1"; gene_id "Ledus.S2G230100"
Ledus.S2	AUGUSTUS	CDS	18021206	18022183	0.91	-	0	transcript_id "Ledus.S2G230100.t1"; gene_id "Ledus.S2G230100"
Ledus.S2	AUGUSTUS	exon	18021206	18022183	.	-	.	transcript_id "Ledus.S2G230100.t1"; gene_id "Ledus.S2G230100"
Ledus.S2	AUGUSTUS	intron	18022184	18022273	.	-	.	transcript_id "Ledus.S2G230100.t1"; gene_id "Ledus.S2G230100"
Ledus.S2	AUGUSTUS	CDS	18022274	18022423	0.65	-	0	transcript_id "Ledus.S2G230100.t1"; gene_id "Ledus.S2G230100"
Ledus.S2	AUGUSTUS	exon	18022274	18022423	.	-	.	transcript_id "Ledus.S2G230100.t1"; gene_id "Ledus.S2G230100"
Ledus.S2	AUGUSTUS	start_codon	18022421	18022423	.	-	0	transcript_id "Ledus.S2G230100.t1"; gene_id "Ledus.S2G230100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11499.t1 is derived from g5117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4940515	4941751	.	-	.	Ledus.S4G065500
Ledus.S4	AUGUSTUS	transcript	4940515	4941751	.	-	.	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	stop_codon	4940512	4940514	.	-	0	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	CDS	4940515	4940586	0.99	-	0	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	exon	4940515	4940586	.	-	.	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	intron	4940587	4940687	.	-	.	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	CDS	4940688	4940909	0.99	-	0	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	exon	4940688	4940909	.	-	.	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	intron	4940910	4941009	.	-	.	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	CDS	4941010	4941118	1	-	1	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	exon	4941010	4941118	.	-	.	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	intron	4941119	4941196	.	-	.	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	CDS	4941197	4941306	1	-	0	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	exon	4941197	4941306	.	-	.	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	intron	4941307	4941381	.	-	.	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	CDS	4941382	4941599	1	-	2	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	exon	4941382	4941599	.	-	.	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	intron	4941600	4941684	.	-	.	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	CDS	4941685	4941751	1	-	0	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	exon	4941685	4941751	.	-	.	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
Ledus.S4	AUGUSTUS	start_codon	4941749	4941751	.	-	0	transcript_id "Ledus.S4G065500.t1"; gene_id "Ledus.S4G065500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6524.t1 is derived from g3967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31984367	31986874	.	+	.	Ledus.S1G394500
Ledus.S1	AUGUSTUS	transcript	31984367	31986874	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	start_codon	31984367	31984369	.	+	0	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	CDS	31984367	31984530	0.64	+	0	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	exon	31984367	31984530	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	intron	31984531	31984619	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	CDS	31984620	31984854	1	+	1	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	exon	31984620	31984854	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	intron	31984855	31984937	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	CDS	31984938	31985192	1	+	0	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	exon	31984938	31985192	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	intron	31985193	31985430	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	CDS	31985431	31985579	1	+	0	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	exon	31985431	31985579	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	intron	31985580	31985657	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	CDS	31985658	31985841	0.99	+	1	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	exon	31985658	31985841	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	intron	31985842	31985948	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	CDS	31985949	31986136	0.98	+	0	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	exon	31985949	31986136	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	intron	31986137	31986280	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	CDS	31986281	31986485	1	+	1	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	exon	31986281	31986485	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	intron	31986486	31986583	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	CDS	31986584	31986689	0.49	+	0	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	exon	31986584	31986689	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	intron	31986690	31986791	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	CDS	31986792	31986874	0.98	+	2	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	exon	31986792	31986874	.	+	.	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
Ledus.S1	AUGUSTUS	stop_codon	31986875	31986877	.	+	0	transcript_id "Ledus.S1G394500.t1"; gene_id "Ledus.S1G394500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9102.t1 is derived from g10132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4607147	4608884	.	+	.	Ledus.S3G057900
Ledus.S3	AUGUSTUS	transcript	4607147	4608884	.	+	.	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	start_codon	4607147	4607149	.	+	0	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	CDS	4607147	4607217	0.9	+	0	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	exon	4607147	4607217	.	+	.	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	intron	4607218	4607347	.	+	.	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	CDS	4607348	4607568	0.51	+	1	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	exon	4607348	4607568	.	+	.	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	intron	4607569	4607917	.	+	.	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	CDS	4607918	4607998	0.27	+	2	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	exon	4607918	4607998	.	+	.	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	intron	4607999	4608279	.	+	.	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	CDS	4608280	4608884	0.65	+	2	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	exon	4608280	4608884	.	+	.	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
Ledus.S3	AUGUSTUS	stop_codon	4608885	4608887	.	+	0	transcript_id "Ledus.S3G057900.t1"; gene_id "Ledus.S3G057900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4576.t1 is derived from g2013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17854560	17854987	.	-	.	Ledus.S1G199700
Ledus.S1	AUGUSTUS	transcript	17854560	17854987	.	-	.	transcript_id "Ledus.S1G199700.t1"; gene_id "Ledus.S1G199700"
Ledus.S1	AUGUSTUS	stop_codon	17854557	17854559	.	-	0	transcript_id "Ledus.S1G199700.t1"; gene_id "Ledus.S1G199700"
Ledus.S1	AUGUSTUS	CDS	17854560	17854760	0.76	-	0	transcript_id "Ledus.S1G199700.t1"; gene_id "Ledus.S1G199700"
Ledus.S1	AUGUSTUS	exon	17854560	17854760	.	-	.	transcript_id "Ledus.S1G199700.t1"; gene_id "Ledus.S1G199700"
Ledus.S1	AUGUSTUS	intron	17854761	17854828	.	-	.	transcript_id "Ledus.S1G199700.t1"; gene_id "Ledus.S1G199700"
Ledus.S1	AUGUSTUS	CDS	17854829	17854987	0.71	-	0	transcript_id "Ledus.S1G199700.t1"; gene_id "Ledus.S1G199700"
Ledus.S1	AUGUSTUS	exon	17854829	17854987	.	-	.	transcript_id "Ledus.S1G199700.t1"; gene_id "Ledus.S1G199700"
Ledus.S1	AUGUSTUS	start_codon	17854985	17854987	.	-	0	transcript_id "Ledus.S1G199700.t1"; gene_id "Ledus.S1G199700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg3278.t1 is derived from g713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7226761	7229037	.	+	.	Ledus.S1G069900
Ledus.S1	AUGUSTUS	transcript	7226761	7229037	.	+	.	transcript_id "Ledus.S1G069900.t1"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	start_codon	7226761	7226763	.	+	0	transcript_id "Ledus.S1G069900.t1"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	CDS	7226761	7229037	0.93	+	0	transcript_id "Ledus.S1G069900.t1"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	exon	7226761	7229037	.	+	.	transcript_id "Ledus.S1G069900.t1"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	stop_codon	7229038	7229040	.	+	0	transcript_id "Ledus.S1G069900.t1"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	transcript	7228312	7229037	.	+	.	transcript_id "Ledus.S1G069900.t2"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	start_codon	7228312	7228314	.	+	0	transcript_id "Ledus.S1G069900.t2"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	CDS	7228312	7229037	0.84	+	0	transcript_id "Ledus.S1G069900.t2"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	exon	7228312	7229037	.	+	.	transcript_id "Ledus.S1G069900.t2"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	stop_codon	7229038	7229040	.	+	0	transcript_id "Ledus.S1G069900.t2"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	transcript	7228198	7229037	.	+	.	transcript_id "Ledus.S1G069900.t3"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	start_codon	7228198	7228200	.	+	0	transcript_id "Ledus.S1G069900.t3"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	CDS	7228198	7229037	0.52	+	0	transcript_id "Ledus.S1G069900.t3"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	exon	7228198	7229037	.	+	.	transcript_id "Ledus.S1G069900.t3"; gene_id "Ledus.S1G069900"
Ledus.S1	AUGUSTUS	stop_codon	7229038	7229040	.	+	0	transcript_id "Ledus.S1G069900.t3"; gene_id "Ledus.S1G069900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2861.t1 is derived from g295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4232901	4234668	.	-	.	Ledus.S1G028200
Ledus.S1	AUGUSTUS	transcript	4232901	4234668	.	-	.	transcript_id "Ledus.S1G028200.t1"; gene_id "Ledus.S1G028200"
Ledus.S1	AUGUSTUS	stop_codon	4232898	4232900	.	-	0	transcript_id "Ledus.S1G028200.t1"; gene_id "Ledus.S1G028200"
Ledus.S1	AUGUSTUS	CDS	4232901	4234062	0.52	-	1	transcript_id "Ledus.S1G028200.t1"; gene_id "Ledus.S1G028200"
Ledus.S1	AUGUSTUS	exon	4232901	4234062	.	-	.	transcript_id "Ledus.S1G028200.t1"; gene_id "Ledus.S1G028200"
Ledus.S1	AUGUSTUS	intron	4234063	4234155	.	-	.	transcript_id "Ledus.S1G028200.t1"; gene_id "Ledus.S1G028200"
Ledus.S1	AUGUSTUS	CDS	4234156	4234187	0.54	-	0	transcript_id "Ledus.S1G028200.t1"; gene_id "Ledus.S1G028200"
Ledus.S1	AUGUSTUS	exon	4234156	4234187	.	-	.	transcript_id "Ledus.S1G028200.t1"; gene_id "Ledus.S1G028200"
Ledus.S1	AUGUSTUS	intron	4234188	4234335	.	-	.	transcript_id "Ledus.S1G028200.t1"; gene_id "Ledus.S1G028200"
Ledus.S1	AUGUSTUS	CDS	4234336	4234668	0.9	-	0	transcript_id "Ledus.S1G028200.t1"; gene_id "Ledus.S1G028200"
Ledus.S1	AUGUSTUS	exon	4234336	4234668	.	-	.	transcript_id "Ledus.S1G028200.t1"; gene_id "Ledus.S1G028200"
Ledus.S1	AUGUSTUS	start_codon	4234666	4234668	.	-	0	transcript_id "Ledus.S1G028200.t1"; gene_id "Ledus.S1G028200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2397.t1 is derived from g9260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17873807	17874112	.	+	.	Ledus.S2G227900
Ledus.S2	AUGUSTUS	transcript	17873807	17874112	.	+	.	transcript_id "Ledus.S2G227900.t1"; gene_id "Ledus.S2G227900"
Ledus.S2	AUGUSTUS	start_codon	17873807	17873809	.	+	0	transcript_id "Ledus.S2G227900.t1"; gene_id "Ledus.S2G227900"
Ledus.S2	AUGUSTUS	CDS	17873807	17874112	0.9	+	0	transcript_id "Ledus.S2G227900.t1"; gene_id "Ledus.S2G227900"
Ledus.S2	AUGUSTUS	exon	17873807	17874112	.	+	.	transcript_id "Ledus.S2G227900.t1"; gene_id "Ledus.S2G227900"
Ledus.S2	AUGUSTUS	stop_codon	17874113	17874115	.	+	0	transcript_id "Ledus.S2G227900.t1"; gene_id "Ledus.S2G227900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7834.t1 is derived from g12505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7372840	7375158	.	-	.	Ledus.S5G061200
Ledus.S5	AUGUSTUS	transcript	7372840	7375158	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	stop_codon	7372837	7372839	.	-	0	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	CDS	7372840	7372911	0.91	-	0	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	exon	7372840	7372911	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	intron	7372912	7373039	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	CDS	7373040	7373096	1	-	0	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	exon	7373040	7373096	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	intron	7373097	7373227	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	CDS	7373228	7373335	0.98	-	0	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	exon	7373228	7373335	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	intron	7373336	7373436	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	CDS	7373437	7373534	0.66	-	2	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	exon	7373437	7373534	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	intron	7373535	7373633	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	CDS	7373634	7373678	0.68	-	2	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	exon	7373634	7373678	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	intron	7373679	7373793	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	CDS	7373794	7373924	0.8	-	1	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	exon	7373794	7373924	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	intron	7373925	7374221	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	CDS	7374222	7374355	0.92	-	0	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	exon	7374222	7374355	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	intron	7374356	7374476	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	CDS	7374477	7374635	0.83	-	0	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	exon	7374477	7374635	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	intron	7374636	7374760	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	CDS	7374761	7374837	1	-	2	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	exon	7374761	7374837	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	intron	7374838	7375025	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	CDS	7375026	7375158	0.59	-	0	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	exon	7375026	7375158	.	-	.	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
Ledus.S5	AUGUSTUS	start_codon	7375156	7375158	.	-	0	transcript_id "Ledus.S5G061200.t1"; gene_id "Ledus.S5G061200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11505.t1 is derived from g5123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4959739	4960446	.	-	.	Ledus.S4G066100
Ledus.S4	AUGUSTUS	transcript	4959739	4960446	.	-	.	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	stop_codon	4959736	4959738	.	-	0	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	CDS	4959739	4959864	0.88	-	0	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	exon	4959739	4959864	.	-	.	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	intron	4959865	4959956	.	-	.	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	CDS	4959957	4960118	1	-	0	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	exon	4959957	4960118	.	-	.	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	intron	4960119	4960201	.	-	.	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	CDS	4960202	4960293	1	-	2	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	exon	4960202	4960293	.	-	.	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	intron	4960294	4960388	.	-	.	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	CDS	4960389	4960446	0.78	-	0	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	exon	4960389	4960446	.	-	.	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
Ledus.S4	AUGUSTUS	start_codon	4960444	4960446	.	-	0	transcript_id "Ledus.S4G066100.t1"; gene_id "Ledus.S4G066100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4897.t1 is derived from g2335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20566316	20566821	.	-	.	Ledus.S1G231800
Ledus.S1	AUGUSTUS	transcript	20566316	20566821	.	-	.	transcript_id "Ledus.S1G231800.t1"; gene_id "Ledus.S1G231800"
Ledus.S1	AUGUSTUS	stop_codon	20566313	20566315	.	-	0	transcript_id "Ledus.S1G231800.t1"; gene_id "Ledus.S1G231800"
Ledus.S1	AUGUSTUS	CDS	20566316	20566639	0.72	-	0	transcript_id "Ledus.S1G231800.t1"; gene_id "Ledus.S1G231800"
Ledus.S1	AUGUSTUS	exon	20566316	20566639	.	-	.	transcript_id "Ledus.S1G231800.t1"; gene_id "Ledus.S1G231800"
Ledus.S1	AUGUSTUS	intron	20566640	20566737	.	-	.	transcript_id "Ledus.S1G231800.t1"; gene_id "Ledus.S1G231800"
Ledus.S1	AUGUSTUS	CDS	20566738	20566821	0.77	-	0	transcript_id "Ledus.S1G231800.t1"; gene_id "Ledus.S1G231800"
Ledus.S1	AUGUSTUS	exon	20566738	20566821	.	-	.	transcript_id "Ledus.S1G231800.t1"; gene_id "Ledus.S1G231800"
Ledus.S1	AUGUSTUS	start_codon	20566819	20566821	.	-	0	transcript_id "Ledus.S1G231800.t1"; gene_id "Ledus.S1G231800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg469.t1 is derived from g7330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2755738	2757443	.	+	.	Ledus.S2G035100
Ledus.S2	AUGUSTUS	transcript	2755738	2757443	.	+	.	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	start_codon	2755738	2755740	.	+	0	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	CDS	2755738	2756169	1	+	0	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	exon	2755738	2756169	.	+	.	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	intron	2756170	2756294	.	+	.	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	CDS	2756295	2756481	1	+	0	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	exon	2756295	2756481	.	+	.	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	intron	2756482	2756610	.	+	.	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	CDS	2756611	2756970	0.99	+	2	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	exon	2756611	2756970	.	+	.	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	intron	2756971	2757090	.	+	.	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	CDS	2757091	2757172	1	+	2	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	exon	2757091	2757172	.	+	.	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	intron	2757173	2757316	.	+	.	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	CDS	2757317	2757443	0.83	+	1	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	exon	2757317	2757443	.	+	.	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
Ledus.S2	AUGUSTUS	stop_codon	2757444	2757446	.	+	0	transcript_id "Ledus.S2G035100.t1"; gene_id "Ledus.S2G035100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10943.t1 is derived from g4561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	745915	747702	.	-	.	Ledus.S4G009900
Ledus.S4	AUGUSTUS	transcript	745915	747702	.	-	.	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	stop_codon	745912	745914	.	-	0	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	CDS	745915	746472	0.64	-	0	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	exon	745915	746472	.	-	.	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	intron	746473	746558	.	-	.	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	CDS	746559	746688	1	-	1	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	exon	746559	746688	.	-	.	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	intron	746689	746846	.	-	.	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	CDS	746847	746942	1	-	1	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	exon	746847	746942	.	-	.	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	intron	746943	747412	.	-	.	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	CDS	747413	747702	0.58	-	0	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	exon	747413	747702	.	-	.	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	start_codon	747700	747702	.	-	0	transcript_id "Ledus.S4G009900.t1"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	transcript	745915	747702	.	-	.	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	stop_codon	745912	745914	.	-	0	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	CDS	745915	746472	0.62	-	0	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	exon	745915	746472	.	-	.	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	intron	746473	746558	.	-	.	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	CDS	746559	746688	1	-	1	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	exon	746559	746688	.	-	.	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	intron	746689	746846	.	-	.	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	CDS	746847	746988	0.8	-	2	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	exon	746847	746988	.	-	.	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	intron	746989	747308	.	-	.	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	CDS	747309	747343	0.75	-	1	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	exon	747309	747343	.	-	.	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	intron	747344	747412	.	-	.	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	CDS	747413	747702	0.62	-	0	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	exon	747413	747702	.	-	.	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
Ledus.S4	AUGUSTUS	start_codon	747700	747702	.	-	0	transcript_id "Ledus.S4G009900.t2"; gene_id "Ledus.S4G009900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9345.t1 is derived from g10375.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6291582	6292450	.	+	.	Ledus.S3G082200
Ledus.S3	AUGUSTUS	transcript	6291582	6292450	.	+	.	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	start_codon	6291582	6291584	.	+	0	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	CDS	6291582	6291609	1	+	0	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	exon	6291582	6291609	.	+	.	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	intron	6291610	6291694	.	+	.	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	CDS	6291695	6291797	1	+	2	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	exon	6291695	6291797	.	+	.	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	intron	6291798	6291876	.	+	.	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	CDS	6291877	6291991	1	+	1	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	exon	6291877	6291991	.	+	.	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	intron	6291992	6292070	.	+	.	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	CDS	6292071	6292187	1	+	0	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	exon	6292071	6292187	.	+	.	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	intron	6292188	6292282	.	+	.	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	CDS	6292283	6292450	1	+	0	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	exon	6292283	6292450	.	+	.	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	stop_codon	6292451	6292453	.	+	0	transcript_id "Ledus.S3G082200.t1"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	transcript	6291582	6292450	.	+	.	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	start_codon	6291582	6291584	.	+	0	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	CDS	6291582	6291609	1	+	0	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	exon	6291582	6291609	.	+	.	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	intron	6291610	6291679	.	+	.	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	CDS	6291680	6291797	1	+	2	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	exon	6291680	6291797	.	+	.	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	intron	6291798	6291876	.	+	.	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	CDS	6291877	6291991	1	+	1	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	exon	6291877	6291991	.	+	.	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	intron	6291992	6292070	.	+	.	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	CDS	6292071	6292187	1	+	0	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	exon	6292071	6292187	.	+	.	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	intron	6292188	6292282	.	+	.	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	CDS	6292283	6292450	1	+	0	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	exon	6292283	6292450	.	+	.	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
Ledus.S3	AUGUSTUS	stop_codon	6292451	6292453	.	+	0	transcript_id "Ledus.S3G082200.t2"; gene_id "Ledus.S3G082200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7746.t1 is derived from g12417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5984596	5989283	.	-	.	Ledus.S5G052400
Ledus.S5	AUGUSTUS	transcript	5984596	5989283	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	stop_codon	5984593	5984595	.	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5984596	5984615	0.58	-	2	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5984596	5984615	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5984616	5984710	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5984711	5984751	0.41	-	1	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5984711	5984751	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5984752	5985035	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5985036	5985105	0.52	-	2	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5985036	5985105	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5985106	5985196	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5985197	5985338	1	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5985197	5985338	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5985339	5985433	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5985434	5985538	1	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5985434	5985538	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5985539	5985664	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5985665	5985739	1	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5985665	5985739	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5985740	5985851	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5985852	5985913	0.99	-	2	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5985852	5985913	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5985914	5986024	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5986025	5986109	1	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5986025	5986109	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5986110	5986235	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5986236	5986319	1	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5986236	5986319	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5986320	5986415	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5986416	5986472	1	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5986416	5986472	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5986473	5986627	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5986628	5986798	1	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5986628	5986798	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5986799	5986953	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5986954	5987045	1	-	2	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5986954	5987045	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5987046	5987199	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5987200	5987254	1	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5987200	5987254	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5987255	5987396	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5987397	5987490	1	-	1	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5987397	5987490	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5987491	5987588	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5987589	5987682	1	-	2	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5987589	5987682	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5987683	5987793	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5987794	5987881	1	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5987794	5987881	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5987882	5988001	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5988002	5988127	1	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5988002	5988127	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5988128	5988239	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5988240	5988383	1	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5988240	5988383	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5988384	5988499	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5988500	5988891	0.99	-	2	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5988500	5988891	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	intron	5988892	5988979	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	CDS	5988980	5989283	0.98	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	exon	5988980	5989283	.	-	.	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
Ledus.S5	AUGUSTUS	start_codon	5989281	5989283	.	-	0	transcript_id "Ledus.S5G052400.t1"; gene_id "Ledus.S5G052400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4763.t1 is derived from g2201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19643413	19644299	.	+	.	Ledus.S1G218400
Ledus.S1	AUGUSTUS	transcript	19643413	19644299	.	+	.	transcript_id "Ledus.S1G218400.t1"; gene_id "Ledus.S1G218400"
Ledus.S1	AUGUSTUS	start_codon	19643413	19643415	.	+	0	transcript_id "Ledus.S1G218400.t1"; gene_id "Ledus.S1G218400"
Ledus.S1	AUGUSTUS	CDS	19643413	19643553	0.71	+	0	transcript_id "Ledus.S1G218400.t1"; gene_id "Ledus.S1G218400"
Ledus.S1	AUGUSTUS	exon	19643413	19643553	.	+	.	transcript_id "Ledus.S1G218400.t1"; gene_id "Ledus.S1G218400"
Ledus.S1	AUGUSTUS	intron	19643554	19643836	.	+	.	transcript_id "Ledus.S1G218400.t1"; gene_id "Ledus.S1G218400"
Ledus.S1	AUGUSTUS	CDS	19643837	19644086	0.62	+	0	transcript_id "Ledus.S1G218400.t1"; gene_id "Ledus.S1G218400"
Ledus.S1	AUGUSTUS	exon	19643837	19644086	.	+	.	transcript_id "Ledus.S1G218400.t1"; gene_id "Ledus.S1G218400"
Ledus.S1	AUGUSTUS	intron	19644087	19644165	.	+	.	transcript_id "Ledus.S1G218400.t1"; gene_id "Ledus.S1G218400"
Ledus.S1	AUGUSTUS	CDS	19644166	19644299	0.49	+	2	transcript_id "Ledus.S1G218400.t1"; gene_id "Ledus.S1G218400"
Ledus.S1	AUGUSTUS	exon	19644166	19644299	.	+	.	transcript_id "Ledus.S1G218400.t1"; gene_id "Ledus.S1G218400"
Ledus.S1	AUGUSTUS	stop_codon	19644300	19644302	.	+	0	transcript_id "Ledus.S1G218400.t1"; gene_id "Ledus.S1G218400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5164.t1 is derived from g2603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22047499	22048015	.	+	.	Ledus.S1G258500
Ledus.S1	AUGUSTUS	transcript	22047499	22048015	.	+	.	transcript_id "Ledus.S1G258500.t1"; gene_id "Ledus.S1G258500"
Ledus.S1	AUGUSTUS	start_codon	22047499	22047501	.	+	0	transcript_id "Ledus.S1G258500.t1"; gene_id "Ledus.S1G258500"
Ledus.S1	AUGUSTUS	CDS	22047499	22047677	0.98	+	0	transcript_id "Ledus.S1G258500.t1"; gene_id "Ledus.S1G258500"
Ledus.S1	AUGUSTUS	exon	22047499	22047677	.	+	.	transcript_id "Ledus.S1G258500.t1"; gene_id "Ledus.S1G258500"
Ledus.S1	AUGUSTUS	intron	22047678	22047954	.	+	.	transcript_id "Ledus.S1G258500.t1"; gene_id "Ledus.S1G258500"
Ledus.S1	AUGUSTUS	CDS	22047955	22048015	0.78	+	1	transcript_id "Ledus.S1G258500.t1"; gene_id "Ledus.S1G258500"
Ledus.S1	AUGUSTUS	exon	22047955	22048015	.	+	.	transcript_id "Ledus.S1G258500.t1"; gene_id "Ledus.S1G258500"
Ledus.S1	AUGUSTUS	stop_codon	22048016	22048018	.	+	0	transcript_id "Ledus.S1G258500.t1"; gene_id "Ledus.S1G258500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2221.t1 is derived from g9084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16150254	16150760	.	+	.	Ledus.S2G210300
Ledus.S2	AUGUSTUS	transcript	16150254	16150760	.	+	.	transcript_id "Ledus.S2G210300.t1"; gene_id "Ledus.S2G210300"
Ledus.S2	AUGUSTUS	start_codon	16150254	16150256	.	+	0	transcript_id "Ledus.S2G210300.t1"; gene_id "Ledus.S2G210300"
Ledus.S2	AUGUSTUS	CDS	16150254	16150378	0.12	+	0	transcript_id "Ledus.S2G210300.t1"; gene_id "Ledus.S2G210300"
Ledus.S2	AUGUSTUS	exon	16150254	16150378	.	+	.	transcript_id "Ledus.S2G210300.t1"; gene_id "Ledus.S2G210300"
Ledus.S2	AUGUSTUS	intron	16150379	16150575	.	+	.	transcript_id "Ledus.S2G210300.t1"; gene_id "Ledus.S2G210300"
Ledus.S2	AUGUSTUS	CDS	16150576	16150585	0.21	+	1	transcript_id "Ledus.S2G210300.t1"; gene_id "Ledus.S2G210300"
Ledus.S2	AUGUSTUS	exon	16150576	16150585	.	+	.	transcript_id "Ledus.S2G210300.t1"; gene_id "Ledus.S2G210300"
Ledus.S2	AUGUSTUS	intron	16150586	16150676	.	+	.	transcript_id "Ledus.S2G210300.t1"; gene_id "Ledus.S2G210300"
Ledus.S2	AUGUSTUS	CDS	16150677	16150760	0.64	+	0	transcript_id "Ledus.S2G210300.t1"; gene_id "Ledus.S2G210300"
Ledus.S2	AUGUSTUS	exon	16150677	16150760	.	+	.	transcript_id "Ledus.S2G210300.t1"; gene_id "Ledus.S2G210300"
Ledus.S2	AUGUSTUS	stop_codon	16150761	16150763	.	+	0	transcript_id "Ledus.S2G210300.t1"; gene_id "Ledus.S2G210300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3731.t1 is derived from g1167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11237925	11238332	.	-	.	Ledus.S1G115200
Ledus.S1	AUGUSTUS	transcript	11237925	11238332	.	-	.	transcript_id "Ledus.S1G115200.t1"; gene_id "Ledus.S1G115200"
Ledus.S1	AUGUSTUS	stop_codon	11237922	11237924	.	-	0	transcript_id "Ledus.S1G115200.t1"; gene_id "Ledus.S1G115200"
Ledus.S1	AUGUSTUS	CDS	11237925	11238332	0.66	-	0	transcript_id "Ledus.S1G115200.t1"; gene_id "Ledus.S1G115200"
Ledus.S1	AUGUSTUS	exon	11237925	11238332	.	-	.	transcript_id "Ledus.S1G115200.t1"; gene_id "Ledus.S1G115200"
Ledus.S1	AUGUSTUS	start_codon	11238330	11238332	.	-	0	transcript_id "Ledus.S1G115200.t1"; gene_id "Ledus.S1G115200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11271.t1 is derived from g4889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3120590	3121306	.	+	.	Ledus.S4G042700
Ledus.S4	AUGUSTUS	transcript	3120590	3121306	.	+	.	transcript_id "Ledus.S4G042700.t1"; gene_id "Ledus.S4G042700"
Ledus.S4	AUGUSTUS	start_codon	3120590	3120592	.	+	0	transcript_id "Ledus.S4G042700.t1"; gene_id "Ledus.S4G042700"
Ledus.S4	AUGUSTUS	CDS	3120590	3121306	0.9	+	0	transcript_id "Ledus.S4G042700.t1"; gene_id "Ledus.S4G042700"
Ledus.S4	AUGUSTUS	exon	3120590	3121306	.	+	.	transcript_id "Ledus.S4G042700.t1"; gene_id "Ledus.S4G042700"
Ledus.S4	AUGUSTUS	stop_codon	3121307	3121309	.	+	0	transcript_id "Ledus.S4G042700.t1"; gene_id "Ledus.S4G042700"
# This transcript jg9976.t2 is derived from g11006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9977.t1 is derived from g11007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11712098	11713822	.	+	.	Ledus.S3G145400
Ledus.S3	AUGUSTUS	transcript	11712098	11713822	.	+	.	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	start_codon	11712098	11712100	.	+	0	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	CDS	11712098	11712346	0.62	+	0	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	exon	11712098	11712346	.	+	.	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	intron	11712347	11712426	.	+	.	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	CDS	11712427	11712729	1	+	0	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	exon	11712427	11712729	.	+	.	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	intron	11712730	11712808	.	+	.	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	CDS	11712809	11712868	1	+	0	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	exon	11712809	11712868	.	+	.	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	intron	11712869	11713015	.	+	.	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	CDS	11713016	11713822	0.87	+	0	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	exon	11713016	11713822	.	+	.	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
Ledus.S3	AUGUSTUS	stop_codon	11713823	11713825	.	+	0	transcript_id "Ledus.S3G145400.t1"; gene_id "Ledus.S3G145400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8536.t1 is derived from g9566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	78415	82185	.	+	.	Ledus.S3G001300
Ledus.S3	AUGUSTUS	transcript	78415	82185	.	+	.	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	start_codon	78415	78417	.	+	0	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	78415	78607	0.62	+	0	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	78415	78607	.	+	.	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	intron	78608	78686	.	+	.	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	78687	78760	0.98	+	2	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	78687	78760	.	+	.	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	intron	78761	78896	.	+	.	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	78897	79075	0.99	+	0	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	78897	79075	.	+	.	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	intron	79076	79174	.	+	.	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	79175	81833	0.94	+	1	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	79175	81833	.	+	.	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	intron	81834	81929	.	+	.	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	81930	81970	0.95	+	0	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	81930	81970	.	+	.	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	intron	81971	82127	.	+	.	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	82128	82185	0.49	+	1	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	82128	82185	.	+	.	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	stop_codon	82186	82188	.	+	0	transcript_id "Ledus.S3G001300.t1"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	transcript	78415	82185	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	start_codon	78415	78417	.	+	0	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	78415	78607	0.3	+	0	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	78415	78607	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	intron	78608	78686	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	78687	78691	0.57	+	2	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	78687	78691	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	intron	78692	78787	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	78788	78796	0.62	+	0	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	78788	78796	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	intron	78797	78896	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	78897	79075	1	+	0	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	78897	79075	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	intron	79076	79174	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	79175	81833	0.96	+	1	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	79175	81833	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	intron	81834	81929	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	81930	81970	0.96	+	0	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	81930	81970	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	intron	81971	82127	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	CDS	82128	82185	0.47	+	1	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	exon	82128	82185	.	+	.	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
Ledus.S3	AUGUSTUS	stop_codon	82186	82188	.	+	0	transcript_id "Ledus.S3G001300.t2"; gene_id "Ledus.S3G001300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10381.t1 is derived from g11411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14606850	14609122	.	-	.	Ledus.S3G185800
Ledus.S3	AUGUSTUS	transcript	14606850	14609122	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	stop_codon	14606847	14606849	.	-	0	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	CDS	14606850	14606977	1	-	2	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	exon	14606850	14606977	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	intron	14606978	14607062	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	CDS	14607063	14607426	1	-	0	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	exon	14607063	14607426	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	intron	14607427	14607521	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	CDS	14607522	14608114	1	-	2	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	exon	14607522	14608114	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	intron	14608115	14608192	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	CDS	14608193	14608321	1	-	2	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	exon	14608193	14608321	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	intron	14608322	14608410	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	CDS	14608411	14608655	1	-	1	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	exon	14608411	14608655	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	intron	14608656	14608724	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	CDS	14608725	14608876	1	-	0	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	exon	14608725	14608876	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	intron	14608877	14608951	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	CDS	14608952	14609122	1	-	0	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	exon	14608952	14609122	.	-	.	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
Ledus.S3	AUGUSTUS	start_codon	14609120	14609122	.	-	0	transcript_id "Ledus.S3G185800.t1"; gene_id "Ledus.S3G185800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10665.t1 is derived from g11695.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16932994	16936393	.	+	.	Ledus.S3G214200
Ledus.S3	AUGUSTUS	transcript	16932994	16936393	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	start_codon	16932994	16932996	.	+	0	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16932994	16933179	0.84	+	0	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16932994	16933179	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	intron	16933180	16933267	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16933268	16933276	0.96	+	0	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16933268	16933276	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	intron	16933277	16933440	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16933441	16933586	0.44	+	0	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16933441	16933586	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	intron	16933587	16933708	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16933709	16933848	0.5	+	1	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16933709	16933848	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	intron	16933849	16933963	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16933964	16934031	0.95	+	2	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16933964	16934031	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	intron	16934032	16934360	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16934361	16934471	1	+	0	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16934361	16934471	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	intron	16934472	16934541	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16934542	16934725	1	+	0	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16934542	16934725	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	intron	16934726	16934813	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16934814	16935086	1	+	2	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16934814	16935086	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	intron	16935087	16935398	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16935399	16935449	1	+	2	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16935399	16935449	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	intron	16935450	16935567	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16935568	16935705	0.99	+	2	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16935568	16935705	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	intron	16935706	16935810	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16935811	16935898	1	+	2	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16935811	16935898	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	intron	16935899	16936046	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16936047	16936140	1	+	1	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16936047	16936140	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	intron	16936141	16936240	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	CDS	16936241	16936393	1	+	0	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	exon	16936241	16936393	.	+	.	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
Ledus.S3	AUGUSTUS	stop_codon	16936394	16936396	.	+	0	transcript_id "Ledus.S3G214200.t1"; gene_id "Ledus.S3G214200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4418.t1 is derived from g1854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17013621	17014289	.	-	.	Ledus.S1G183900
Ledus.S1	AUGUSTUS	transcript	17013621	17014289	.	-	.	transcript_id "Ledus.S1G183900.t1"; gene_id "Ledus.S1G183900"
Ledus.S1	AUGUSTUS	stop_codon	17013618	17013620	.	-	0	transcript_id "Ledus.S1G183900.t1"; gene_id "Ledus.S1G183900"
Ledus.S1	AUGUSTUS	CDS	17013621	17013645	1	-	1	transcript_id "Ledus.S1G183900.t1"; gene_id "Ledus.S1G183900"
Ledus.S1	AUGUSTUS	exon	17013621	17013645	.	-	.	transcript_id "Ledus.S1G183900.t1"; gene_id "Ledus.S1G183900"
Ledus.S1	AUGUSTUS	intron	17013646	17014065	.	-	.	transcript_id "Ledus.S1G183900.t1"; gene_id "Ledus.S1G183900"
Ledus.S1	AUGUSTUS	CDS	17014066	17014289	0.65	-	0	transcript_id "Ledus.S1G183900.t1"; gene_id "Ledus.S1G183900"
Ledus.S1	AUGUSTUS	exon	17014066	17014289	.	-	.	transcript_id "Ledus.S1G183900.t1"; gene_id "Ledus.S1G183900"
Ledus.S1	AUGUSTUS	start_codon	17014287	17014289	.	-	0	transcript_id "Ledus.S1G183900.t1"; gene_id "Ledus.S1G183900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2521.t1 is derived from g9384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18572919	18573780	.	-	.	Ledus.S2G240300
Ledus.S2	AUGUSTUS	transcript	18572919	18573780	.	-	.	transcript_id "Ledus.S2G240300.t1"; gene_id "Ledus.S2G240300"
Ledus.S2	AUGUSTUS	stop_codon	18572916	18572918	.	-	0	transcript_id "Ledus.S2G240300.t1"; gene_id "Ledus.S2G240300"
Ledus.S2	AUGUSTUS	CDS	18572919	18573252	0.97	-	1	transcript_id "Ledus.S2G240300.t1"; gene_id "Ledus.S2G240300"
Ledus.S2	AUGUSTUS	exon	18572919	18573252	.	-	.	transcript_id "Ledus.S2G240300.t1"; gene_id "Ledus.S2G240300"
Ledus.S2	AUGUSTUS	intron	18573253	18573326	.	-	.	transcript_id "Ledus.S2G240300.t1"; gene_id "Ledus.S2G240300"
Ledus.S2	AUGUSTUS	CDS	18573327	18573638	1	-	1	transcript_id "Ledus.S2G240300.t1"; gene_id "Ledus.S2G240300"
Ledus.S2	AUGUSTUS	exon	18573327	18573638	.	-	.	transcript_id "Ledus.S2G240300.t1"; gene_id "Ledus.S2G240300"
Ledus.S2	AUGUSTUS	intron	18573639	18573745	.	-	.	transcript_id "Ledus.S2G240300.t1"; gene_id "Ledus.S2G240300"
Ledus.S2	AUGUSTUS	CDS	18573746	18573780	1	-	0	transcript_id "Ledus.S2G240300.t1"; gene_id "Ledus.S2G240300"
Ledus.S2	AUGUSTUS	exon	18573746	18573780	.	-	.	transcript_id "Ledus.S2G240300.t1"; gene_id "Ledus.S2G240300"
Ledus.S2	AUGUSTUS	start_codon	18573778	18573780	.	-	0	transcript_id "Ledus.S2G240300.t1"; gene_id "Ledus.S2G240300"
# This transcript jg7677.t2 is derived from g12348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7678.t1 is derived from g12349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5141434	5145189	.	-	.	Ledus.S5G045600
Ledus.S5	AUGUSTUS	transcript	5141434	5145180	.	-	.	transcript_id "Ledus.S5G045600.t1"; gene_id "Ledus.S5G045600"
Ledus.S5	AUGUSTUS	stop_codon	5141431	5141433	.	-	0	transcript_id "Ledus.S5G045600.t1"; gene_id "Ledus.S5G045600"
Ledus.S5	AUGUSTUS	CDS	5141434	5145180	0.78	-	0	transcript_id "Ledus.S5G045600.t1"; gene_id "Ledus.S5G045600"
Ledus.S5	AUGUSTUS	exon	5141434	5145180	.	-	.	transcript_id "Ledus.S5G045600.t1"; gene_id "Ledus.S5G045600"
Ledus.S5	AUGUSTUS	start_codon	5145178	5145180	.	-	0	transcript_id "Ledus.S5G045600.t1"; gene_id "Ledus.S5G045600"
Ledus.S5	AUGUSTUS	transcript	5141434	5145189	.	-	.	transcript_id "Ledus.S5G045600.t2"; gene_id "Ledus.S5G045600"
Ledus.S5	AUGUSTUS	stop_codon	5141431	5141433	.	-	0	transcript_id "Ledus.S5G045600.t2"; gene_id "Ledus.S5G045600"
Ledus.S5	AUGUSTUS	CDS	5141434	5145189	0.68	-	0	transcript_id "Ledus.S5G045600.t2"; gene_id "Ledus.S5G045600"
Ledus.S5	AUGUSTUS	exon	5141434	5145189	.	-	.	transcript_id "Ledus.S5G045600.t2"; gene_id "Ledus.S5G045600"
Ledus.S5	AUGUSTUS	start_codon	5145187	5145189	.	-	0	transcript_id "Ledus.S5G045600.t2"; gene_id "Ledus.S5G045600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12973.t1 is derived from g6783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1501821	1505671	.	+	.	Ledus.S6G003500
Ledus.S6	AUGUSTUS	transcript	1501821	1505671	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	start_codon	1501821	1501823	.	+	0	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1501821	1501878	0.95	+	0	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1501821	1501878	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1501879	1501975	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1501976	1502142	0.71	+	2	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1501976	1502142	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1502143	1502259	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1502260	1502365	1	+	0	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1502260	1502365	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1502366	1502465	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1502466	1502601	0.98	+	2	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1502466	1502601	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1502602	1502703	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1502704	1502830	0.98	+	1	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1502704	1502830	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1502831	1502925	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1502926	1503020	0.68	+	0	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1502926	1503020	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1503021	1503310	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1503311	1503341	0.49	+	1	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1503311	1503341	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1503342	1503543	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1503544	1503630	1	+	0	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1503544	1503630	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1503631	1503745	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1503746	1503838	1	+	0	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1503746	1503838	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1503839	1503920	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1503921	1503974	0.86	+	0	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1503921	1503974	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1503975	1504220	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1504221	1504375	0.88	+	0	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1504221	1504375	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1504376	1504471	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1504472	1504628	1	+	1	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1504472	1504628	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1504629	1504771	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1504772	1504894	1	+	0	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1504772	1504894	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1504895	1504983	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1504984	1505169	1	+	0	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1504984	1505169	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1505170	1505320	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1505321	1505399	1	+	0	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1505321	1505399	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	intron	1505400	1505522	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	CDS	1505523	1505671	0.99	+	2	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	exon	1505523	1505671	.	+	.	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
Ledus.S6	AUGUSTUS	stop_codon	1505672	1505674	.	+	0	transcript_id "Ledus.S6G003500.t1"; gene_id "Ledus.S6G003500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7514.t1 is derived from g12185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3533203	3533526	.	-	.	Ledus.S5G029200
Ledus.S5	AUGUSTUS	transcript	3533203	3533526	.	-	.	transcript_id "Ledus.S5G029200.t1"; gene_id "Ledus.S5G029200"
Ledus.S5	AUGUSTUS	stop_codon	3533200	3533202	.	-	0	transcript_id "Ledus.S5G029200.t1"; gene_id "Ledus.S5G029200"
Ledus.S5	AUGUSTUS	CDS	3533203	3533526	0.57	-	0	transcript_id "Ledus.S5G029200.t1"; gene_id "Ledus.S5G029200"
Ledus.S5	AUGUSTUS	exon	3533203	3533526	.	-	.	transcript_id "Ledus.S5G029200.t1"; gene_id "Ledus.S5G029200"
Ledus.S5	AUGUSTUS	start_codon	3533524	3533526	.	-	0	transcript_id "Ledus.S5G029200.t1"; gene_id "Ledus.S5G029200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg891.t1 is derived from g7752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5982307	5983019	.	-	.	Ledus.S2G077300
Ledus.S2	AUGUSTUS	transcript	5982307	5983019	.	-	.	transcript_id "Ledus.S2G077300.t1"; gene_id "Ledus.S2G077300"
Ledus.S2	AUGUSTUS	stop_codon	5982304	5982306	.	-	0	transcript_id "Ledus.S2G077300.t1"; gene_id "Ledus.S2G077300"
Ledus.S2	AUGUSTUS	CDS	5982307	5982533	0.88	-	2	transcript_id "Ledus.S2G077300.t1"; gene_id "Ledus.S2G077300"
Ledus.S2	AUGUSTUS	exon	5982307	5982533	.	-	.	transcript_id "Ledus.S2G077300.t1"; gene_id "Ledus.S2G077300"
Ledus.S2	AUGUSTUS	intron	5982534	5982922	.	-	.	transcript_id "Ledus.S2G077300.t1"; gene_id "Ledus.S2G077300"
Ledus.S2	AUGUSTUS	CDS	5982923	5983019	0.61	-	0	transcript_id "Ledus.S2G077300.t1"; gene_id "Ledus.S2G077300"
Ledus.S2	AUGUSTUS	exon	5982923	5983019	.	-	.	transcript_id "Ledus.S2G077300.t1"; gene_id "Ledus.S2G077300"
Ledus.S2	AUGUSTUS	start_codon	5983017	5983019	.	-	0	transcript_id "Ledus.S2G077300.t1"; gene_id "Ledus.S2G077300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9936.t1 is derived from g10966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11306031	11307752	.	+	.	Ledus.S3G141300
Ledus.S3	AUGUSTUS	transcript	11306031	11307752	.	+	.	transcript_id "Ledus.S3G141300.t1"; gene_id "Ledus.S3G141300"
Ledus.S3	AUGUSTUS	start_codon	11306031	11306033	.	+	0	transcript_id "Ledus.S3G141300.t1"; gene_id "Ledus.S3G141300"
Ledus.S3	AUGUSTUS	CDS	11306031	11307752	0.7	+	0	transcript_id "Ledus.S3G141300.t1"; gene_id "Ledus.S3G141300"
Ledus.S3	AUGUSTUS	exon	11306031	11307752	.	+	.	transcript_id "Ledus.S3G141300.t1"; gene_id "Ledus.S3G141300"
Ledus.S3	AUGUSTUS	stop_codon	11307753	11307755	.	+	0	transcript_id "Ledus.S3G141300.t1"; gene_id "Ledus.S3G141300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8390.t1 is derived from g13062.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11446742	11447851	.	-	.	Ledus.S5G116800
Ledus.S5	AUGUSTUS	transcript	11446742	11447851	.	-	.	transcript_id "Ledus.S5G116800.t1"; gene_id "Ledus.S5G116800"
Ledus.S5	AUGUSTUS	stop_codon	11446739	11446741	.	-	0	transcript_id "Ledus.S5G116800.t1"; gene_id "Ledus.S5G116800"
Ledus.S5	AUGUSTUS	CDS	11446742	11447851	0.91	-	0	transcript_id "Ledus.S5G116800.t1"; gene_id "Ledus.S5G116800"
Ledus.S5	AUGUSTUS	exon	11446742	11447851	.	-	.	transcript_id "Ledus.S5G116800.t1"; gene_id "Ledus.S5G116800"
Ledus.S5	AUGUSTUS	start_codon	11447849	11447851	.	-	0	transcript_id "Ledus.S5G116800.t1"; gene_id "Ledus.S5G116800"
Ledus.S5	AUGUSTUS	transcript	11446742	11447776	.	-	.	transcript_id "Ledus.S5G116800.t2"; gene_id "Ledus.S5G116800"
Ledus.S5	AUGUSTUS	stop_codon	11446739	11446741	.	-	0	transcript_id "Ledus.S5G116800.t2"; gene_id "Ledus.S5G116800"
Ledus.S5	AUGUSTUS	CDS	11446742	11447776	0.89	-	0	transcript_id "Ledus.S5G116800.t2"; gene_id "Ledus.S5G116800"
Ledus.S5	AUGUSTUS	exon	11446742	11447776	.	-	.	transcript_id "Ledus.S5G116800.t2"; gene_id "Ledus.S5G116800"
Ledus.S5	AUGUSTUS	start_codon	11447774	11447776	.	-	0	transcript_id "Ledus.S5G116800.t2"; gene_id "Ledus.S5G116800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5455.t1 is derived from g2894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24384031	24385743	.	-	.	Ledus.S1G287600
Ledus.S1	AUGUSTUS	transcript	24384031	24385743	.	-	.	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	stop_codon	24384028	24384030	.	-	0	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	CDS	24384031	24384160	0.65	-	1	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	exon	24384031	24384160	.	-	.	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	intron	24384161	24384253	.	-	.	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	CDS	24384254	24384321	1	-	0	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	exon	24384254	24384321	.	-	.	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	intron	24384322	24384404	.	-	.	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	CDS	24384405	24384491	1	-	0	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	exon	24384405	24384491	.	-	.	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	intron	24384492	24384567	.	-	.	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	CDS	24384568	24384636	1	-	0	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	exon	24384568	24384636	.	-	.	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	intron	24384637	24384713	.	-	.	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	CDS	24384714	24384782	1	-	0	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	exon	24384714	24384782	.	-	.	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	intron	24384783	24384873	.	-	.	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	CDS	24384874	24385743	0.97	-	0	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	exon	24384874	24385743	.	-	.	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
Ledus.S1	AUGUSTUS	start_codon	24385741	24385743	.	-	0	transcript_id "Ledus.S1G287600.t1"; gene_id "Ledus.S1G287600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2539.t1 is derived from g9402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18758763	18761975	.	-	.	Ledus.S2G242100
Ledus.S2	AUGUSTUS	transcript	18758763	18761975	.	-	.	transcript_id "Ledus.S2G242100.t1"; gene_id "Ledus.S2G242100"
Ledus.S2	AUGUSTUS	stop_codon	18758760	18758762	.	-	0	transcript_id "Ledus.S2G242100.t1"; gene_id "Ledus.S2G242100"
Ledus.S2	AUGUSTUS	CDS	18758763	18760010	1	-	0	transcript_id "Ledus.S2G242100.t1"; gene_id "Ledus.S2G242100"
Ledus.S2	AUGUSTUS	exon	18758763	18760010	.	-	.	transcript_id "Ledus.S2G242100.t1"; gene_id "Ledus.S2G242100"
Ledus.S2	AUGUSTUS	intron	18760011	18760586	.	-	.	transcript_id "Ledus.S2G242100.t1"; gene_id "Ledus.S2G242100"
Ledus.S2	AUGUSTUS	CDS	18760587	18761975	0.91	-	0	transcript_id "Ledus.S2G242100.t1"; gene_id "Ledus.S2G242100"
Ledus.S2	AUGUSTUS	exon	18760587	18761975	.	-	.	transcript_id "Ledus.S2G242100.t1"; gene_id "Ledus.S2G242100"
Ledus.S2	AUGUSTUS	start_codon	18761973	18761975	.	-	0	transcript_id "Ledus.S2G242100.t1"; gene_id "Ledus.S2G242100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7680.t1 is derived from g12351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5146765	5147562	.	+	.	Ledus.S5G045800
Ledus.S5	AUGUSTUS	transcript	5146765	5147562	.	+	.	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	start_codon	5146765	5146767	.	+	0	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	CDS	5146765	5146897	1	+	0	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	exon	5146765	5146897	.	+	.	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	intron	5146898	5147046	.	+	.	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	CDS	5147047	5147116	1	+	2	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	exon	5147047	5147116	.	+	.	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	intron	5147117	5147209	.	+	.	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	CDS	5147210	5147315	1	+	1	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	exon	5147210	5147315	.	+	.	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	intron	5147316	5147400	.	+	.	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	CDS	5147401	5147562	0.82	+	0	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	exon	5147401	5147562	.	+	.	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
Ledus.S5	AUGUSTUS	stop_codon	5147563	5147565	.	+	0	transcript_id "Ledus.S5G045800.t1"; gene_id "Ledus.S5G045800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8148.t1 is derived from g12819.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9384470	9385823	.	-	.	Ledus.S5G092600
Ledus.S5	AUGUSTUS	transcript	9384470	9385823	.	-	.	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	stop_codon	9384467	9384469	.	-	0	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	CDS	9384470	9384861	1	-	2	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	exon	9384470	9384861	.	-	.	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	intron	9384862	9384945	.	-	.	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	CDS	9384946	9385111	1	-	0	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	exon	9384946	9385111	.	-	.	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	intron	9385112	9385199	.	-	.	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	CDS	9385200	9385391	1	-	0	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	exon	9385200	9385391	.	-	.	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	intron	9385392	9385466	.	-	.	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	CDS	9385467	9385823	0.42	-	0	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	exon	9385467	9385823	.	-	.	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
Ledus.S5	AUGUSTUS	start_codon	9385821	9385823	.	-	0	transcript_id "Ledus.S5G092600.t1"; gene_id "Ledus.S5G092600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6915.t1 is derived from g4359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35191317	35192244	.	+	.	Ledus.S1G433600
Ledus.S1	AUGUSTUS	transcript	35191317	35192244	.	+	.	transcript_id "Ledus.S1G433600.t1"; gene_id "Ledus.S1G433600"
Ledus.S1	AUGUSTUS	start_codon	35191317	35191319	.	+	0	transcript_id "Ledus.S1G433600.t1"; gene_id "Ledus.S1G433600"
Ledus.S1	AUGUSTUS	CDS	35191317	35191757	0.43	+	0	transcript_id "Ledus.S1G433600.t1"; gene_id "Ledus.S1G433600"
Ledus.S1	AUGUSTUS	exon	35191317	35191757	.	+	.	transcript_id "Ledus.S1G433600.t1"; gene_id "Ledus.S1G433600"
Ledus.S1	AUGUSTUS	intron	35191758	35191980	.	+	.	transcript_id "Ledus.S1G433600.t1"; gene_id "Ledus.S1G433600"
Ledus.S1	AUGUSTUS	CDS	35191981	35192244	0.52	+	0	transcript_id "Ledus.S1G433600.t1"; gene_id "Ledus.S1G433600"
Ledus.S1	AUGUSTUS	exon	35191981	35192244	.	+	.	transcript_id "Ledus.S1G433600.t1"; gene_id "Ledus.S1G433600"
Ledus.S1	AUGUSTUS	stop_codon	35192245	35192247	.	+	0	transcript_id "Ledus.S1G433600.t1"; gene_id "Ledus.S1G433600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12500.t1 is derived from g6121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12391181	12396442	.	-	.	Ledus.S4G165600
Ledus.S4	AUGUSTUS	transcript	12391181	12396442	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	stop_codon	12391178	12391180	.	-	0	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	CDS	12391181	12391408	1	-	0	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	exon	12391181	12391408	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	intron	12391409	12391580	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	CDS	12391581	12393023	1	-	0	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	exon	12391581	12393023	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	intron	12393024	12393263	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	CDS	12393264	12393847	0.88	-	2	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	exon	12393264	12393847	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	intron	12393848	12393961	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	CDS	12393962	12394340	0.88	-	0	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	exon	12393962	12394340	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	intron	12394341	12394483	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	CDS	12394484	12395218	1	-	0	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	exon	12394484	12395218	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	intron	12395219	12395306	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	CDS	12395307	12395552	1	-	0	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	exon	12395307	12395552	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	intron	12395553	12395643	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	CDS	12395644	12396213	0.53	-	0	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	exon	12395644	12396213	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	intron	12396214	12396319	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	CDS	12396320	12396442	0.84	-	0	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	exon	12396320	12396442	.	-	.	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
Ledus.S4	AUGUSTUS	start_codon	12396440	12396442	.	-	0	transcript_id "Ledus.S4G165600.t1"; gene_id "Ledus.S4G165600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12657.t1 is derived from g6279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13654921	13655636	.	-	.	Ledus.S4G181300
Ledus.S4	AUGUSTUS	transcript	13654921	13655636	.	-	.	transcript_id "Ledus.S4G181300.t1"; gene_id "Ledus.S4G181300"
Ledus.S4	AUGUSTUS	stop_codon	13654918	13654920	.	-	0	transcript_id "Ledus.S4G181300.t1"; gene_id "Ledus.S4G181300"
Ledus.S4	AUGUSTUS	CDS	13654921	13655386	0.92	-	1	transcript_id "Ledus.S4G181300.t1"; gene_id "Ledus.S4G181300"
Ledus.S4	AUGUSTUS	exon	13654921	13655386	.	-	.	transcript_id "Ledus.S4G181300.t1"; gene_id "Ledus.S4G181300"
Ledus.S4	AUGUSTUS	intron	13655387	13655502	.	-	.	transcript_id "Ledus.S4G181300.t1"; gene_id "Ledus.S4G181300"
Ledus.S4	AUGUSTUS	CDS	13655503	13655636	0.84	-	0	transcript_id "Ledus.S4G181300.t1"; gene_id "Ledus.S4G181300"
Ledus.S4	AUGUSTUS	exon	13655503	13655636	.	-	.	transcript_id "Ledus.S4G181300.t1"; gene_id "Ledus.S4G181300"
Ledus.S4	AUGUSTUS	start_codon	13655634	13655636	.	-	0	transcript_id "Ledus.S4G181300.t1"; gene_id "Ledus.S4G181300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5028.t1 is derived from g2467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21204619	21205728	.	+	.	Ledus.S1G244900
Ledus.S1	AUGUSTUS	transcript	21204619	21205728	.	+	.	transcript_id "Ledus.S1G244900.t1"; gene_id "Ledus.S1G244900"
Ledus.S1	AUGUSTUS	start_codon	21204619	21204621	.	+	0	transcript_id "Ledus.S1G244900.t1"; gene_id "Ledus.S1G244900"
Ledus.S1	AUGUSTUS	CDS	21204619	21205728	0.98	+	0	transcript_id "Ledus.S1G244900.t1"; gene_id "Ledus.S1G244900"
Ledus.S1	AUGUSTUS	exon	21204619	21205728	.	+	.	transcript_id "Ledus.S1G244900.t1"; gene_id "Ledus.S1G244900"
Ledus.S1	AUGUSTUS	stop_codon	21205729	21205731	.	+	0	transcript_id "Ledus.S1G244900.t1"; gene_id "Ledus.S1G244900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8085.t1 is derived from g12756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9095623	9096752	.	+	.	Ledus.S5G086300
Ledus.S5	AUGUSTUS	transcript	9095623	9096752	.	+	.	transcript_id "Ledus.S5G086300.t1"; gene_id "Ledus.S5G086300"
Ledus.S5	AUGUSTUS	start_codon	9095623	9095625	.	+	0	transcript_id "Ledus.S5G086300.t1"; gene_id "Ledus.S5G086300"
Ledus.S5	AUGUSTUS	CDS	9095623	9096092	0.9	+	0	transcript_id "Ledus.S5G086300.t1"; gene_id "Ledus.S5G086300"
Ledus.S5	AUGUSTUS	exon	9095623	9096092	.	+	.	transcript_id "Ledus.S5G086300.t1"; gene_id "Ledus.S5G086300"
Ledus.S5	AUGUSTUS	intron	9096093	9096226	.	+	.	transcript_id "Ledus.S5G086300.t1"; gene_id "Ledus.S5G086300"
Ledus.S5	AUGUSTUS	CDS	9096227	9096460	1	+	1	transcript_id "Ledus.S5G086300.t1"; gene_id "Ledus.S5G086300"
Ledus.S5	AUGUSTUS	exon	9096227	9096460	.	+	.	transcript_id "Ledus.S5G086300.t1"; gene_id "Ledus.S5G086300"
Ledus.S5	AUGUSTUS	intron	9096461	9096535	.	+	.	transcript_id "Ledus.S5G086300.t1"; gene_id "Ledus.S5G086300"
Ledus.S5	AUGUSTUS	CDS	9096536	9096752	1	+	1	transcript_id "Ledus.S5G086300.t1"; gene_id "Ledus.S5G086300"
Ledus.S5	AUGUSTUS	exon	9096536	9096752	.	+	.	transcript_id "Ledus.S5G086300.t1"; gene_id "Ledus.S5G086300"
Ledus.S5	AUGUSTUS	stop_codon	9096753	9096755	.	+	0	transcript_id "Ledus.S5G086300.t1"; gene_id "Ledus.S5G086300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5932.t1 is derived from g3375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27896191	27898142	.	+	.	Ledus.S1G335300
Ledus.S1	AUGUSTUS	transcript	27896191	27898142	.	+	.	transcript_id "Ledus.S1G335300.t1"; gene_id "Ledus.S1G335300"
Ledus.S1	AUGUSTUS	start_codon	27896191	27896193	.	+	0	transcript_id "Ledus.S1G335300.t1"; gene_id "Ledus.S1G335300"
Ledus.S1	AUGUSTUS	CDS	27896191	27897152	0.97	+	0	transcript_id "Ledus.S1G335300.t1"; gene_id "Ledus.S1G335300"
Ledus.S1	AUGUSTUS	exon	27896191	27897152	.	+	.	transcript_id "Ledus.S1G335300.t1"; gene_id "Ledus.S1G335300"
Ledus.S1	AUGUSTUS	intron	27897153	27897241	.	+	.	transcript_id "Ledus.S1G335300.t1"; gene_id "Ledus.S1G335300"
Ledus.S1	AUGUSTUS	CDS	27897242	27898142	0.82	+	1	transcript_id "Ledus.S1G335300.t1"; gene_id "Ledus.S1G335300"
Ledus.S1	AUGUSTUS	exon	27897242	27898142	.	+	.	transcript_id "Ledus.S1G335300.t1"; gene_id "Ledus.S1G335300"
Ledus.S1	AUGUSTUS	stop_codon	27898143	27898145	.	+	0	transcript_id "Ledus.S1G335300.t1"; gene_id "Ledus.S1G335300"
# This transcript jg9345.t2 is derived from g10375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9346.t1 is derived from g10376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6292907	6295907	.	-	.	Ledus.S3G082300
Ledus.S3	AUGUSTUS	transcript	6292907	6295907	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	stop_codon	6292904	6292906	.	-	0	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6292907	6293025	1	-	2	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6292907	6293025	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6293026	6293103	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6293104	6293227	1	-	0	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6293104	6293227	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6293228	6293293	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6293294	6293464	1	-	0	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6293294	6293464	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6293465	6293557	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6293558	6293674	1	-	0	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6293558	6293674	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6293675	6293755	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6293756	6293858	1	-	1	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6293756	6293858	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6293859	6293956	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6293957	6294123	1	-	0	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6293957	6294123	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6294124	6294207	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6294208	6294277	1	-	1	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6294208	6294277	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6294278	6294372	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6294373	6294468	0.32	-	1	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6294373	6294468	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6294469	6294545	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6294546	6294643	0.28	-	0	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6294546	6294643	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6294644	6294828	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6294829	6294858	0.52	-	0	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6294829	6294858	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6294859	6294929	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6294930	6295033	0.53	-	2	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6294930	6295033	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6295034	6295193	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6295194	6295273	1	-	1	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6295194	6295273	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6295274	6295403	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6295404	6295475	1	-	1	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6295404	6295475	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6295476	6295571	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6295572	6295679	1	-	1	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6295572	6295679	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	intron	6295680	6295773	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	CDS	6295774	6295907	1	-	0	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	exon	6295774	6295907	.	-	.	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
Ledus.S3	AUGUSTUS	start_codon	6295905	6295907	.	-	0	transcript_id "Ledus.S3G082300.t1"; gene_id "Ledus.S3G082300"
# This transcript jg5564.t2 is derived from g3003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5565.t1 is derived from g3004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25167016	25168814	.	+	.	Ledus.S1G298600
Ledus.S1	AUGUSTUS	transcript	25167016	25168814	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	start_codon	25167016	25167018	.	+	0	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	CDS	25167016	25167158	0.38	+	0	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	exon	25167016	25167158	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	intron	25167159	25167547	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	CDS	25167548	25167719	0.35	+	1	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	exon	25167548	25167719	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	intron	25167720	25167804	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	CDS	25167805	25168066	1	+	0	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	exon	25167805	25168066	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	intron	25168067	25168149	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	CDS	25168150	25168227	1	+	2	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	exon	25168150	25168227	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	intron	25168228	25168298	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	CDS	25168299	25168357	1	+	2	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	exon	25168299	25168357	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	intron	25168358	25168440	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	CDS	25168441	25168557	1	+	0	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	exon	25168441	25168557	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	intron	25168558	25168644	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	CDS	25168645	25168705	1	+	0	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	exon	25168645	25168705	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	intron	25168706	25168800	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	CDS	25168801	25168814	1	+	2	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	exon	25168801	25168814	.	+	.	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
Ledus.S1	AUGUSTUS	stop_codon	25168815	25168817	.	+	0	transcript_id "Ledus.S1G298600.t1"; gene_id "Ledus.S1G298600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6332.t1 is derived from g3775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30549916	30559275	.	-	.	Ledus.S1G375300
Ledus.S1	AUGUSTUS	transcript	30549916	30559275	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	stop_codon	30549913	30549915	.	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30549916	30550008	0.92	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30549916	30550008	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30550009	30550236	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30550237	30550423	0.85	-	1	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30550237	30550423	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30550424	30550820	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30550821	30550877	0.38	-	1	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30550821	30550877	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30550878	30551076	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30551077	30551180	0.53	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30551077	30551180	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30551181	30551380	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30551381	30551548	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30551381	30551548	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30551549	30551702	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30551703	30551760	1	-	1	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30551703	30551760	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30551761	30551923	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30551924	30552201	0.99	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30551924	30552201	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30552202	30552290	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30552291	30552362	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30552291	30552362	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30552363	30552461	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30552462	30552528	1	-	1	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30552462	30552528	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30552529	30552675	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30552676	30552720	1	-	1	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30552676	30552720	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30552721	30553000	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30553001	30553242	0.99	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30553001	30553242	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30553243	30553353	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30553354	30553476	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30553354	30553476	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30553477	30553594	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30553595	30553669	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30553595	30553669	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30553670	30553765	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30553766	30553828	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30553766	30553828	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30553829	30553943	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30553944	30554026	0.99	-	2	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30553944	30554026	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30554027	30554242	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30554243	30554285	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30554243	30554285	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30554286	30554407	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30554408	30554566	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30554408	30554566	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30554567	30554730	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30554731	30554812	1	-	1	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30554731	30554812	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30554813	30554955	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30554956	30555026	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30554956	30555026	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30555027	30555151	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30555152	30555251	1	-	1	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30555152	30555251	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30555252	30555330	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30555331	30555531	1	-	1	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30555331	30555531	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30555532	30555669	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30555670	30555755	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30555670	30555755	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30555756	30556047	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30556048	30556122	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30556048	30556122	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30556123	30556318	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30556319	30556411	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30556319	30556411	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30556412	30557536	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30557537	30557641	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30557537	30557641	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30557642	30557715	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30557716	30557786	0.98	-	2	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30557716	30557786	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30557787	30557895	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30557896	30558049	0.99	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30557896	30558049	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30558050	30558181	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30558182	30558245	1	-	1	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30558182	30558245	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30558246	30558387	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30558388	30558471	1	-	1	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30558388	30558471	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30558472	30558702	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30558703	30558749	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30558703	30558749	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30558750	30558900	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30558901	30558960	1	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30558901	30558960	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	intron	30558961	30559164	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	CDS	30559165	30559275	0.99	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	exon	30559165	30559275	.	-	.	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
Ledus.S1	AUGUSTUS	start_codon	30559273	30559275	.	-	0	transcript_id "Ledus.S1G375300.t1"; gene_id "Ledus.S1G375300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2303.t1 is derived from g9166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17100520	17106095	.	+	.	Ledus.S2G218500
Ledus.S2	AUGUSTUS	transcript	17100520	17106095	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	start_codon	17100520	17100522	.	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17100520	17100762	0.81	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17100520	17100762	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17100763	17100854	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17100855	17100911	1	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17100855	17100911	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17100912	17100990	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17100991	17101224	0.99	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17100991	17101224	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17101225	17101336	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17101337	17101474	0.99	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17101337	17101474	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17101475	17101646	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17101647	17101809	1	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17101647	17101809	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17101810	17101945	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17101946	17102181	1	+	2	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17101946	17102181	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17102182	17102287	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17102288	17102416	1	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17102288	17102416	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17102417	17102510	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17102511	17102690	1	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17102511	17102690	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17102691	17102782	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17102783	17102920	0.87	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17102783	17102920	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17102921	17103034	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17103035	17103199	1	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17103035	17103199	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17103200	17103312	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17103313	17103474	1	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17103313	17103474	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17103475	17103581	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17103582	17103671	1	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17103582	17103671	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17103672	17103779	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17103780	17103918	1	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17103780	17103918	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17103919	17103999	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17104000	17104177	1	+	2	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17104000	17104177	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17104178	17104241	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17104242	17104371	1	+	1	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17104242	17104371	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17104372	17104452	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17104453	17104581	1	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17104453	17104581	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17104582	17104674	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17104675	17104812	1	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17104675	17104812	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17104813	17105688	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17105689	17105766	1	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17105689	17105766	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17105767	17105848	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17105849	17105940	0.95	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17105849	17105940	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	intron	17105941	17106049	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	CDS	17106050	17106095	0.92	+	1	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	exon	17106050	17106095	.	+	.	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
Ledus.S2	AUGUSTUS	stop_codon	17106096	17106098	.	+	0	transcript_id "Ledus.S2G218500.t1"; gene_id "Ledus.S2G218500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7039.t1 is derived from g6570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	971792	973471	.	-	.	Ledus.C7G010000
Ledus.C7	AUGUSTUS	transcript	971792	973471	.	-	.	transcript_id "Ledus.C7G010000.t1"; gene_id "Ledus.C7G010000"
Ledus.C7	AUGUSTUS	stop_codon	971789	971791	.	-	0	transcript_id "Ledus.C7G010000.t1"; gene_id "Ledus.C7G010000"
Ledus.C7	AUGUSTUS	CDS	971792	973101	0.65	-	2	transcript_id "Ledus.C7G010000.t1"; gene_id "Ledus.C7G010000"
Ledus.C7	AUGUSTUS	exon	971792	973101	.	-	.	transcript_id "Ledus.C7G010000.t1"; gene_id "Ledus.C7G010000"
Ledus.C7	AUGUSTUS	intron	973102	973179	.	-	.	transcript_id "Ledus.C7G010000.t1"; gene_id "Ledus.C7G010000"
Ledus.C7	AUGUSTUS	CDS	973180	973208	0.85	-	1	transcript_id "Ledus.C7G010000.t1"; gene_id "Ledus.C7G010000"
Ledus.C7	AUGUSTUS	exon	973180	973208	.	-	.	transcript_id "Ledus.C7G010000.t1"; gene_id "Ledus.C7G010000"
Ledus.C7	AUGUSTUS	intron	973209	973304	.	-	.	transcript_id "Ledus.C7G010000.t1"; gene_id "Ledus.C7G010000"
Ledus.C7	AUGUSTUS	CDS	973305	973471	0.63	-	0	transcript_id "Ledus.C7G010000.t1"; gene_id "Ledus.C7G010000"
Ledus.C7	AUGUSTUS	exon	973305	973471	.	-	.	transcript_id "Ledus.C7G010000.t1"; gene_id "Ledus.C7G010000"
Ledus.C7	AUGUSTUS	start_codon	973469	973471	.	-	0	transcript_id "Ledus.C7G010000.t1"; gene_id "Ledus.C7G010000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5370.t1 is derived from g2809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23848171	23848620	.	+	.	Ledus.S1G279100
Ledus.S1	AUGUSTUS	transcript	23848171	23848620	.	+	.	transcript_id "Ledus.S1G279100.t1"; gene_id "Ledus.S1G279100"
Ledus.S1	AUGUSTUS	start_codon	23848171	23848173	.	+	0	transcript_id "Ledus.S1G279100.t1"; gene_id "Ledus.S1G279100"
Ledus.S1	AUGUSTUS	CDS	23848171	23848209	0.62	+	0	transcript_id "Ledus.S1G279100.t1"; gene_id "Ledus.S1G279100"
Ledus.S1	AUGUSTUS	exon	23848171	23848209	.	+	.	transcript_id "Ledus.S1G279100.t1"; gene_id "Ledus.S1G279100"
Ledus.S1	AUGUSTUS	intron	23848210	23848317	.	+	.	transcript_id "Ledus.S1G279100.t1"; gene_id "Ledus.S1G279100"
Ledus.S1	AUGUSTUS	CDS	23848318	23848620	0.6	+	0	transcript_id "Ledus.S1G279100.t1"; gene_id "Ledus.S1G279100"
Ledus.S1	AUGUSTUS	exon	23848318	23848620	.	+	.	transcript_id "Ledus.S1G279100.t1"; gene_id "Ledus.S1G279100"
Ledus.S1	AUGUSTUS	stop_codon	23848621	23848623	.	+	0	transcript_id "Ledus.S1G279100.t1"; gene_id "Ledus.S1G279100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3539.t1 is derived from g975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9345076	9346730	.	+	.	Ledus.S1G096000
Ledus.S1	AUGUSTUS	transcript	9345076	9346730	.	+	.	transcript_id "Ledus.S1G096000.t1"; gene_id "Ledus.S1G096000"
Ledus.S1	AUGUSTUS	start_codon	9345076	9345078	.	+	0	transcript_id "Ledus.S1G096000.t1"; gene_id "Ledus.S1G096000"
Ledus.S1	AUGUSTUS	CDS	9345076	9345618	0.63	+	0	transcript_id "Ledus.S1G096000.t1"; gene_id "Ledus.S1G096000"
Ledus.S1	AUGUSTUS	exon	9345076	9345618	.	+	.	transcript_id "Ledus.S1G096000.t1"; gene_id "Ledus.S1G096000"
Ledus.S1	AUGUSTUS	intron	9345619	9345902	.	+	.	transcript_id "Ledus.S1G096000.t1"; gene_id "Ledus.S1G096000"
Ledus.S1	AUGUSTUS	CDS	9345903	9346275	1	+	0	transcript_id "Ledus.S1G096000.t1"; gene_id "Ledus.S1G096000"
Ledus.S1	AUGUSTUS	exon	9345903	9346275	.	+	.	transcript_id "Ledus.S1G096000.t1"; gene_id "Ledus.S1G096000"
Ledus.S1	AUGUSTUS	intron	9346276	9346557	.	+	.	transcript_id "Ledus.S1G096000.t1"; gene_id "Ledus.S1G096000"
Ledus.S1	AUGUSTUS	CDS	9346558	9346730	0.55	+	2	transcript_id "Ledus.S1G096000.t1"; gene_id "Ledus.S1G096000"
Ledus.S1	AUGUSTUS	exon	9346558	9346730	.	+	.	transcript_id "Ledus.S1G096000.t1"; gene_id "Ledus.S1G096000"
Ledus.S1	AUGUSTUS	stop_codon	9346731	9346733	.	+	0	transcript_id "Ledus.S1G096000.t1"; gene_id "Ledus.S1G096000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5581.t1 is derived from g3020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25249118	25254618	.	-	.	Ledus.S1G300200
Ledus.S1	AUGUSTUS	transcript	25249118	25254618	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	stop_codon	25249115	25249117	.	-	0	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25249118	25249144	0.44	-	0	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25249118	25249144	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25249145	25249227	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25249228	25249977	0.3	-	0	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25249228	25249977	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25249978	25250211	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25250212	25250221	0.5	-	1	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25250212	25250221	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25250222	25250360	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25250361	25250369	0.6	-	1	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25250361	25250369	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25250370	25250452	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25250453	25250486	0.6	-	2	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25250453	25250486	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25250487	25250679	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25250680	25250821	0.87	-	0	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25250680	25250821	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25250822	25251033	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25251034	25251196	0.49	-	1	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25251034	25251196	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25251197	25251364	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25251365	25251475	0.76	-	1	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25251365	25251475	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25251476	25251564	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25251565	25251751	1	-	2	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25251565	25251751	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25251752	25251842	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25251843	25251991	1	-	1	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25251843	25251991	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25251992	25252078	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25252079	25252200	1	-	0	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25252079	25252200	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25252201	25252347	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25252348	25252417	1	-	1	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25252348	25252417	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25252418	25252503	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25252504	25252587	0.35	-	1	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25252504	25252587	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25252588	25252757	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25252758	25252814	0.51	-	1	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25252758	25252814	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25252815	25252981	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25252982	25253104	1	-	1	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25252982	25253104	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25253105	25253206	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25253207	25253337	0.81	-	0	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25253207	25253337	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25253338	25253470	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25253471	25253546	1	-	1	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25253471	25253546	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25253547	25254170	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25254171	25254340	1	-	0	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25254171	25254340	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	intron	25254341	25254420	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	CDS	25254421	25254618	0.92	-	0	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	exon	25254421	25254618	.	-	.	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
Ledus.S1	AUGUSTUS	start_codon	25254616	25254618	.	-	0	transcript_id "Ledus.S1G300200.t1"; gene_id "Ledus.S1G300200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3597.t1 is derived from g1033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9928189	9930874	.	-	.	Ledus.S1G101800
Ledus.S1	AUGUSTUS	transcript	9928189	9930874	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	stop_codon	9928186	9928188	.	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9928189	9928332	1	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9928189	9928332	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	intron	9928333	9928472	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9928473	9928610	1	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9928473	9928610	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	intron	9928611	9928701	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9928702	9928800	1	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9928702	9928800	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	intron	9928801	9928879	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9928880	9928960	1	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9928880	9928960	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	intron	9928961	9929040	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9929041	9929103	1	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9929041	9929103	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	intron	9929104	9929202	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9929203	9929250	1	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9929203	9929250	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	intron	9929251	9929334	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9929335	9929697	1	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9929335	9929697	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	intron	9929698	9929793	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9929794	9929895	0.96	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9929794	9929895	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	intron	9929896	9930004	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9930005	9930129	0.96	-	2	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9930005	9930129	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	intron	9930130	9930225	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9930226	9930292	1	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9930226	9930292	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	intron	9930293	9930401	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9930402	9930461	0.97	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9930402	9930461	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	intron	9930462	9930548	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9930549	9930627	1	-	1	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9930549	9930627	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	intron	9930628	9930707	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	CDS	9930708	9930874	0.98	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	exon	9930708	9930874	.	-	.	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
Ledus.S1	AUGUSTUS	start_codon	9930872	9930874	.	-	0	transcript_id "Ledus.S1G101800.t1"; gene_id "Ledus.S1G101800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5854.t1 is derived from g3296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27328541	27332285	.	-	.	Ledus.S1G327500
Ledus.S1	AUGUSTUS	transcript	27328541	27332285	.	-	.	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	stop_codon	27328538	27328540	.	-	0	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	CDS	27328541	27331794	1	-	2	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	exon	27328541	27331794	.	-	.	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	intron	27331795	27331894	.	-	.	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	CDS	27331895	27331976	0.91	-	0	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	exon	27331895	27331976	.	-	.	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	intron	27331977	27332044	.	-	.	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	CDS	27332045	27332056	1	-	0	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	exon	27332045	27332056	.	-	.	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	intron	27332057	27332135	.	-	.	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	CDS	27332136	27332285	0.76	-	0	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	exon	27332136	27332285	.	-	.	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
Ledus.S1	AUGUSTUS	start_codon	27332283	27332285	.	-	0	transcript_id "Ledus.S1G327500.t1"; gene_id "Ledus.S1G327500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4182.t1 is derived from g1618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15222750	15225045	.	-	.	Ledus.S1G160300
Ledus.S1	AUGUSTUS	transcript	15222750	15225045	.	-	.	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	stop_codon	15222747	15222749	.	-	0	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	CDS	15222750	15224218	0.88	-	2	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	exon	15222750	15224218	.	-	.	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	intron	15224219	15224428	.	-	.	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	CDS	15224429	15224576	0.69	-	0	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	exon	15224429	15224576	.	-	.	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	intron	15224577	15224771	.	-	.	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	CDS	15224772	15224893	0.66	-	2	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	exon	15224772	15224893	.	-	.	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	intron	15224894	15224966	.	-	.	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	CDS	15224967	15225045	0.42	-	0	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	exon	15224967	15225045	.	-	.	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
Ledus.S1	AUGUSTUS	start_codon	15225043	15225045	.	-	0	transcript_id "Ledus.S1G160300.t1"; gene_id "Ledus.S1G160300"
# This transcript jg2965.t2 is derived from g400.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2966.t1 is derived from g401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4986098	4989092	.	+	.	Ledus.S1G038700
Ledus.S1	AUGUSTUS	transcript	4987008	4989092	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	start_codon	4987008	4987010	.	+	0	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4987008	4987417	0.64	+	0	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4987008	4987417	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4987418	4987521	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4987522	4987675	0.97	+	1	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4987522	4987675	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4987676	4987789	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4987790	4987916	0.97	+	0	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4987790	4987916	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4987917	4988009	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4988010	4988095	1	+	2	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4988010	4988095	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4988096	4988219	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4988220	4988291	1	+	0	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4988220	4988291	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4988292	4988382	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4988383	4988592	1	+	0	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4988383	4988592	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4988593	4988768	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4988769	4989092	0.97	+	0	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4988769	4989092	.	+	.	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	stop_codon	4989093	4989095	.	+	0	transcript_id "Ledus.S1G038700.t1"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	transcript	4986098	4988527	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	start_codon	4986098	4986100	.	+	0	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4986098	4986114	0.36	+	0	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4986098	4986114	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4986115	4986199	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4986200	4986223	0.35	+	1	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4986200	4986223	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4986224	4986343	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4986344	4986368	0.33	+	1	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4986344	4986368	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4986369	4986523	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4986524	4986532	0.97	+	0	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4986524	4986532	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4986533	4986577	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4986578	4986582	0.97	+	0	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4986578	4986582	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4986583	4986669	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4986670	4986737	0.88	+	1	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4986670	4986737	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4986738	4986978	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4986979	4987098	0.4	+	2	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4986979	4987098	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4987099	4987302	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4987303	4987417	0.42	+	2	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4987303	4987417	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4987418	4987521	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4987522	4987675	0.88	+	1	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4987522	4987675	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4987676	4987789	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4987790	4987916	0.88	+	0	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4987790	4987916	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4987917	4988009	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4988010	4988095	1	+	2	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4988010	4988095	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4988096	4988219	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4988220	4988291	1	+	0	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4988220	4988291	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4988292	4988382	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4988383	4988449	0.6	+	0	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4988383	4988449	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	intron	4988450	4988519	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	CDS	4988520	4988527	0.6	+	2	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	exon	4988520	4988527	.	+	.	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
Ledus.S1	AUGUSTUS	stop_codon	4988528	4988530	.	+	0	transcript_id "Ledus.S1G038700.t2"; gene_id "Ledus.S1G038700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12081.t1 is derived from g5700.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9430232	9432017	.	-	.	Ledus.S4G123700
Ledus.S4	AUGUSTUS	transcript	9430232	9432017	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	stop_codon	9430229	9430231	.	-	0	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9430232	9430302	0.87	-	2	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9430232	9430302	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	intron	9430303	9430457	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9430458	9430488	1	-	0	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9430458	9430488	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	intron	9430489	9430615	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9430616	9430645	1	-	0	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9430616	9430645	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	intron	9430646	9430732	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9430733	9431112	1	-	2	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9430733	9431112	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	intron	9431113	9431235	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9431236	9431308	0.88	-	0	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9431236	9431308	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	intron	9431309	9431386	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9431387	9431447	0.88	-	1	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9431387	9431447	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	intron	9431448	9431550	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9431551	9432017	0.96	-	0	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9431551	9432017	.	-	.	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	start_codon	9432015	9432017	.	-	0	transcript_id "Ledus.S4G123700.t1"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	transcript	9430297	9432017	.	-	.	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	stop_codon	9430294	9430296	.	-	0	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9430297	9430302	0.95	-	0	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9430297	9430302	.	-	.	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	intron	9430303	9430543	.	-	.	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9430544	9430645	1	-	0	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9430544	9430645	.	-	.	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	intron	9430646	9430732	.	-	.	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9430733	9431112	1	-	2	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9430733	9431112	.	-	.	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	intron	9431113	9431235	.	-	.	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9431236	9431308	0.8	-	0	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9431236	9431308	.	-	.	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	intron	9431309	9431386	.	-	.	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9431387	9431447	0.8	-	1	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9431387	9431447	.	-	.	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	intron	9431448	9431550	.	-	.	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	CDS	9431551	9432017	0.98	-	0	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	exon	9431551	9432017	.	-	.	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
Ledus.S4	AUGUSTUS	start_codon	9432015	9432017	.	-	0	transcript_id "Ledus.S4G123700.t2"; gene_id "Ledus.S4G123700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11467.t1 is derived from g5085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4494760	4496988	.	-	.	Ledus.S4G062300
Ledus.S4	AUGUSTUS	transcript	4494760	4496988	.	-	.	transcript_id "Ledus.S4G062300.t1"; gene_id "Ledus.S4G062300"
Ledus.S4	AUGUSTUS	stop_codon	4494757	4494759	.	-	0	transcript_id "Ledus.S4G062300.t1"; gene_id "Ledus.S4G062300"
Ledus.S4	AUGUSTUS	CDS	4494760	4496988	0.48	-	0	transcript_id "Ledus.S4G062300.t1"; gene_id "Ledus.S4G062300"
Ledus.S4	AUGUSTUS	exon	4494760	4496988	.	-	.	transcript_id "Ledus.S4G062300.t1"; gene_id "Ledus.S4G062300"
Ledus.S4	AUGUSTUS	start_codon	4496986	4496988	.	-	0	transcript_id "Ledus.S4G062300.t1"; gene_id "Ledus.S4G062300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10978.t1 is derived from g4596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	983138	985890	.	-	.	Ledus.S4G013400
Ledus.S4	AUGUSTUS	transcript	983138	985890	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	stop_codon	983135	983137	.	-	0	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	983138	983262	0.86	-	2	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	983138	983262	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	intron	983263	983375	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	983376	983442	0.95	-	0	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	983376	983442	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	intron	983443	983625	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	983626	983857	1	-	1	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	983626	983857	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	intron	983858	983990	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	983991	984067	1	-	0	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	983991	984067	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	intron	984068	984184	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	984185	984250	1	-	0	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	984185	984250	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	intron	984251	984422	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	984423	984471	1	-	1	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	984423	984471	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	intron	984472	984598	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	984599	984649	0.82	-	1	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	984599	984649	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	intron	984650	984727	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	984728	984780	1	-	0	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	984728	984780	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	intron	984781	984909	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	984910	984964	1	-	1	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	984910	984964	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	intron	984965	985069	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	985070	985158	1	-	0	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	985070	985158	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	intron	985159	985326	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	985327	985412	1	-	2	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	985327	985412	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	intron	985413	985522	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	985523	985582	0.6	-	2	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	985523	985582	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	intron	985583	985829	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	CDS	985830	985890	0.81	-	0	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	exon	985830	985890	.	-	.	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
Ledus.S4	AUGUSTUS	start_codon	985888	985890	.	-	0	transcript_id "Ledus.S4G013400.t1"; gene_id "Ledus.S4G013400"
# This transcript jg11013.t2 is derived from g4631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11014.t1 is derived from g4632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1109065	1109553	.	+	.	Ledus.S4G017000
Ledus.S4	AUGUSTUS	transcript	1109065	1109553	.	+	.	transcript_id "Ledus.S4G017000.t1"; gene_id "Ledus.S4G017000"
Ledus.S4	AUGUSTUS	start_codon	1109065	1109067	.	+	0	transcript_id "Ledus.S4G017000.t1"; gene_id "Ledus.S4G017000"
Ledus.S4	AUGUSTUS	CDS	1109065	1109128	0.38	+	0	transcript_id "Ledus.S4G017000.t1"; gene_id "Ledus.S4G017000"
Ledus.S4	AUGUSTUS	exon	1109065	1109128	.	+	.	transcript_id "Ledus.S4G017000.t1"; gene_id "Ledus.S4G017000"
Ledus.S4	AUGUSTUS	intron	1109129	1109332	.	+	.	transcript_id "Ledus.S4G017000.t1"; gene_id "Ledus.S4G017000"
Ledus.S4	AUGUSTUS	CDS	1109333	1109553	0.72	+	2	transcript_id "Ledus.S4G017000.t1"; gene_id "Ledus.S4G017000"
Ledus.S4	AUGUSTUS	exon	1109333	1109553	.	+	.	transcript_id "Ledus.S4G017000.t1"; gene_id "Ledus.S4G017000"
Ledus.S4	AUGUSTUS	stop_codon	1109554	1109556	.	+	0	transcript_id "Ledus.S4G017000.t1"; gene_id "Ledus.S4G017000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1269.t1 is derived from g8130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8999179	8999918	.	-	.	Ledus.S2G115100
Ledus.S2	AUGUSTUS	transcript	8999179	8999918	.	-	.	transcript_id "Ledus.S2G115100.t1"; gene_id "Ledus.S2G115100"
Ledus.S2	AUGUSTUS	stop_codon	8999176	8999178	.	-	0	transcript_id "Ledus.S2G115100.t1"; gene_id "Ledus.S2G115100"
Ledus.S2	AUGUSTUS	CDS	8999179	8999541	0.89	-	0	transcript_id "Ledus.S2G115100.t1"; gene_id "Ledus.S2G115100"
Ledus.S2	AUGUSTUS	exon	8999179	8999541	.	-	.	transcript_id "Ledus.S2G115100.t1"; gene_id "Ledus.S2G115100"
Ledus.S2	AUGUSTUS	intron	8999542	8999627	.	-	.	transcript_id "Ledus.S2G115100.t1"; gene_id "Ledus.S2G115100"
Ledus.S2	AUGUSTUS	CDS	8999628	8999918	1	-	0	transcript_id "Ledus.S2G115100.t1"; gene_id "Ledus.S2G115100"
Ledus.S2	AUGUSTUS	exon	8999628	8999918	.	-	.	transcript_id "Ledus.S2G115100.t1"; gene_id "Ledus.S2G115100"
Ledus.S2	AUGUSTUS	start_codon	8999916	8999918	.	-	0	transcript_id "Ledus.S2G115100.t1"; gene_id "Ledus.S2G115100"
# This transcript jg4256.t2 is derived from g1692.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4257.t1 is derived from g1693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15789304	15797139	.	-	.	Ledus.S1G167800
Ledus.S1	AUGUSTUS	transcript	15789304	15797139	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	stop_codon	15789301	15789303	.	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15789304	15789329	1	-	2	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15789304	15789329	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15789330	15789399	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15789400	15789457	1	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15789400	15789457	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15789458	15789703	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15789704	15789772	1	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15789704	15789772	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15789773	15789880	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15789881	15789960	1	-	2	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15789881	15789960	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15789961	15790277	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15790278	15790395	0.71	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15790278	15790395	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15790396	15790874	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15790875	15790967	0.66	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15790875	15790967	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15790968	15791052	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15791053	15791113	0.96	-	1	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15791053	15791113	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15791114	15791220	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15791221	15791327	0.96	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15791221	15791327	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15791328	15791409	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15791410	15791514	1	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15791410	15791514	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15791515	15791605	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15791606	15791692	1	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15791606	15791692	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15791693	15791785	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15791786	15791866	1	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15791786	15791866	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15791867	15792042	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15792043	15792115	1	-	1	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15792043	15792115	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15792116	15792282	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15792283	15792395	1	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15792283	15792395	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15792396	15792503	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15792504	15792597	0.99	-	1	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15792504	15792597	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15792598	15792722	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15792723	15792778	1	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15792723	15792778	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15792779	15792937	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15792938	15793021	1	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15792938	15793021	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15793022	15793165	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15793166	15793258	1	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15793166	15793258	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15793259	15793652	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15793653	15793826	1	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15793653	15793826	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15793827	15794041	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15794042	15794155	1	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15794042	15794155	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15794156	15795471	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15795472	15795801	0.64	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15795472	15795801	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15795802	15796156	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15796157	15796229	0.61	-	1	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15796157	15796229	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15796230	15796531	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15796532	15796665	0.87	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15796532	15796665	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15796666	15796757	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15796758	15796829	0.45	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15796758	15796829	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15796830	15796909	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15796910	15796969	0.68	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15796910	15796969	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	intron	15796970	15797061	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	CDS	15797062	15797139	0.15	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	exon	15797062	15797139	.	-	.	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
Ledus.S1	AUGUSTUS	start_codon	15797137	15797139	.	-	0	transcript_id "Ledus.S1G167800.t1"; gene_id "Ledus.S1G167800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9147.t1 is derived from g10177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4887048	4888282	.	+	.	Ledus.S3G062400
Ledus.S3	AUGUSTUS	transcript	4887048	4888282	.	+	.	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	start_codon	4887048	4887050	.	+	0	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	CDS	4887048	4887326	1	+	0	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	exon	4887048	4887326	.	+	.	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	intron	4887327	4887408	.	+	.	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	CDS	4887409	4887552	1	+	0	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	exon	4887409	4887552	.	+	.	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	intron	4887553	4887639	.	+	.	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	CDS	4887640	4887888	1	+	0	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	exon	4887640	4887888	.	+	.	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	intron	4887889	4887981	.	+	.	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	CDS	4887982	4888090	1	+	0	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	exon	4887982	4888090	.	+	.	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	intron	4888091	4888178	.	+	.	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	CDS	4888179	4888282	1	+	2	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	exon	4888179	4888282	.	+	.	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
Ledus.S3	AUGUSTUS	stop_codon	4888283	4888285	.	+	0	transcript_id "Ledus.S3G062400.t1"; gene_id "Ledus.S3G062400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1341.t1 is derived from g8202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9332412	9335671	.	-	.	Ledus.S2G122300
Ledus.S2	AUGUSTUS	transcript	9332412	9335671	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	stop_codon	9332409	9332411	.	-	0	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9332412	9332594	0.92	-	0	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9332412	9332594	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9332595	9332698	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9332699	9332827	0.92	-	0	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9332699	9332827	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9332828	9332993	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9332994	9333083	1	-	0	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9332994	9333083	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9333084	9333187	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9333188	9333256	0.94	-	0	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9333188	9333256	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9333257	9333373	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9333374	9333442	0.92	-	0	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9333374	9333442	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9333443	9333560	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9333561	9333656	1	-	0	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9333561	9333656	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9333657	9333760	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9333761	9333835	0.74	-	0	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9333761	9333835	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9333836	9333956	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9333957	9334040	0.98	-	0	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9333957	9334040	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9334041	9334122	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9334123	9334200	1	-	0	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9334123	9334200	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9334201	9334344	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9334345	9334426	1	-	1	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9334345	9334426	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9334427	9334534	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9334535	9334648	0.78	-	1	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9334535	9334648	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9334649	9334760	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9334761	9335289	1	-	2	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9334761	9335289	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9335290	9335385	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9335386	9335465	1	-	1	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9335386	9335465	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	intron	9335466	9335537	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	CDS	9335538	9335671	0.92	-	0	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	exon	9335538	9335671	.	-	.	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
Ledus.S2	AUGUSTUS	start_codon	9335669	9335671	.	-	0	transcript_id "Ledus.S2G122300.t1"; gene_id "Ledus.S2G122300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10851.t1 is derived from g4469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	89506	91675	.	+	.	Ledus.S4G000700
Ledus.S4	AUGUSTUS	transcript	89506	91675	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	start_codon	89506	89508	.	+	0	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	CDS	89506	89703	0.9	+	0	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	exon	89506	89703	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	intron	89704	89776	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	CDS	89777	90124	1	+	0	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	exon	89777	90124	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	intron	90125	90261	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	CDS	90262	90693	1	+	0	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	exon	90262	90693	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	intron	90694	90769	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	CDS	90770	90943	1	+	0	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	exon	90770	90943	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	intron	90944	91025	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	CDS	91026	91139	1	+	0	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	exon	91026	91139	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	intron	91140	91237	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	CDS	91238	91339	1	+	0	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	exon	91238	91339	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	intron	91340	91443	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	CDS	91444	91510	1	+	0	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	exon	91444	91510	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	intron	91511	91610	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	CDS	91611	91675	1	+	2	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	exon	91611	91675	.	+	.	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
Ledus.S4	AUGUSTUS	stop_codon	91676	91678	.	+	0	transcript_id "Ledus.S4G000700.t1"; gene_id "Ledus.S4G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9998.t1 is derived from g11028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11777174	11779213	.	-	.	Ledus.S3G147500
Ledus.S3	AUGUSTUS	transcript	11777174	11779213	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	stop_codon	11777171	11777173	.	-	0	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	CDS	11777174	11777368	0.98	-	0	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	exon	11777174	11777368	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	intron	11777369	11777465	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	CDS	11777466	11777552	0.97	-	0	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	exon	11777466	11777552	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	intron	11777553	11777664	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	CDS	11777665	11777880	0.95	-	0	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	exon	11777665	11777880	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	intron	11777881	11777966	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	CDS	11777967	11778185	1	-	0	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	exon	11777967	11778185	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	intron	11778186	11778265	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	CDS	11778266	11778411	1	-	2	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	exon	11778266	11778411	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	intron	11778412	11778481	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	CDS	11778482	11778540	0.67	-	1	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	exon	11778482	11778540	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	intron	11778541	11778643	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	CDS	11778644	11778792	0.89	-	0	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	exon	11778644	11778792	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	intron	11778793	11778944	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	CDS	11778945	11779073	0.92	-	0	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	exon	11778945	11779073	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	intron	11779074	11779150	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	CDS	11779151	11779213	0.62	-	0	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	exon	11779151	11779213	.	-	.	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
Ledus.S3	AUGUSTUS	start_codon	11779211	11779213	.	-	0	transcript_id "Ledus.S3G147500.t1"; gene_id "Ledus.S3G147500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3127.t1 is derived from g562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6153036	6153905	.	-	.	Ledus.S1G054800
Ledus.S1	AUGUSTUS	transcript	6153036	6153905	.	-	.	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	stop_codon	6153033	6153035	.	-	0	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	CDS	6153036	6153131	0.96	-	0	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	exon	6153036	6153131	.	-	.	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	intron	6153132	6153277	.	-	.	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	CDS	6153278	6153438	1	-	2	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	exon	6153278	6153438	.	-	.	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	intron	6153439	6153565	.	-	.	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	CDS	6153566	6153615	0.93	-	1	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	exon	6153566	6153615	.	-	.	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	intron	6153616	6153695	.	-	.	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	CDS	6153696	6153706	0.93	-	0	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	exon	6153696	6153706	.	-	.	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	intron	6153707	6153842	.	-	.	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	CDS	6153843	6153905	0.99	-	0	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	exon	6153843	6153905	.	-	.	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
Ledus.S1	AUGUSTUS	start_codon	6153903	6153905	.	-	0	transcript_id "Ledus.S1G054800.t1"; gene_id "Ledus.S1G054800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9391.t1 is derived from g10421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6511013	6516464	.	+	.	Ledus.S3G086800
Ledus.S3	AUGUSTUS	transcript	6511013	6516464	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	start_codon	6511013	6511015	.	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6511013	6511229	0.94	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6511013	6511229	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6511230	6511339	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6511340	6511558	0.86	+	2	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6511340	6511558	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6511559	6511811	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6511812	6511870	1	+	2	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6511812	6511870	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6511871	6512111	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6512112	6512228	1	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6512112	6512228	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6512229	6512455	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6512456	6512575	1	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6512456	6512575	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6512576	6512706	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6512707	6512813	0.39	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6512707	6512813	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6512814	6512916	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6512917	6513010	0.76	+	1	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6512917	6513010	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6513011	6513199	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6513200	6513331	0.88	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6513200	6513331	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6513332	6513437	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6513438	6513550	1	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6513438	6513550	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6513551	6513658	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6513659	6513857	0.86	+	1	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6513659	6513857	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6513858	6513954	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6513955	6514163	0.99	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6513955	6514163	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6514164	6514257	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6514258	6514302	1	+	1	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6514258	6514302	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6514303	6514487	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6514488	6514536	1	+	1	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6514488	6514536	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6514537	6514685	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6514686	6514768	1	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6514686	6514768	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6514769	6514850	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6514851	6514967	0.99	+	1	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6514851	6514967	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6514968	6515073	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6515074	6515137	0.9	+	1	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6515074	6515137	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6515138	6515245	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6515246	6515392	0.99	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6515246	6515392	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6515393	6515476	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6515477	6515632	1	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6515477	6515632	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6515633	6515724	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6515725	6515808	1	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6515725	6515808	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6515809	6515900	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6515901	6516116	1	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6515901	6516116	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6516117	6516201	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6516202	6516273	1	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6516202	6516273	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	intron	6516274	6516371	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	CDS	6516372	6516464	0.99	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	exon	6516372	6516464	.	+	.	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
Ledus.S3	AUGUSTUS	stop_codon	6516465	6516467	.	+	0	transcript_id "Ledus.S3G086800.t1"; gene_id "Ledus.S3G086800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7960.t1 is derived from g12631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8211732	8212071	.	-	.	Ledus.S5G073800
Ledus.S5	AUGUSTUS	transcript	8211732	8212071	.	-	.	transcript_id "Ledus.S5G073800.t1"; gene_id "Ledus.S5G073800"
Ledus.S5	AUGUSTUS	stop_codon	8211729	8211731	.	-	0	transcript_id "Ledus.S5G073800.t1"; gene_id "Ledus.S5G073800"
Ledus.S5	AUGUSTUS	CDS	8211732	8211846	0.46	-	1	transcript_id "Ledus.S5G073800.t1"; gene_id "Ledus.S5G073800"
Ledus.S5	AUGUSTUS	exon	8211732	8211846	.	-	.	transcript_id "Ledus.S5G073800.t1"; gene_id "Ledus.S5G073800"
Ledus.S5	AUGUSTUS	intron	8211847	8211976	.	-	.	transcript_id "Ledus.S5G073800.t1"; gene_id "Ledus.S5G073800"
Ledus.S5	AUGUSTUS	CDS	8211977	8212071	0.66	-	0	transcript_id "Ledus.S5G073800.t1"; gene_id "Ledus.S5G073800"
Ledus.S5	AUGUSTUS	exon	8211977	8212071	.	-	.	transcript_id "Ledus.S5G073800.t1"; gene_id "Ledus.S5G073800"
Ledus.S5	AUGUSTUS	start_codon	8212069	8212071	.	-	0	transcript_id "Ledus.S5G073800.t1"; gene_id "Ledus.S5G073800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg513.t1 is derived from g7374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3004530	3006337	.	+	.	Ledus.S2G039500
Ledus.S2	AUGUSTUS	transcript	3004530	3006337	.	+	.	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	start_codon	3004530	3004532	.	+	0	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	CDS	3004530	3004681	0.65	+	0	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	exon	3004530	3004681	.	+	.	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	intron	3004682	3004840	.	+	.	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	CDS	3004841	3004894	1	+	1	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	exon	3004841	3004894	.	+	.	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	intron	3004895	3005137	.	+	.	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	CDS	3005138	3005189	1	+	1	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	exon	3005138	3005189	.	+	.	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	intron	3005190	3005276	.	+	.	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	CDS	3005277	3005655	0.99	+	0	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	exon	3005277	3005655	.	+	.	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	intron	3005656	3005780	.	+	.	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	CDS	3005781	3006337	0.77	+	2	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	exon	3005781	3006337	.	+	.	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
Ledus.S2	AUGUSTUS	stop_codon	3006338	3006340	.	+	0	transcript_id "Ledus.S2G039500.t1"; gene_id "Ledus.S2G039500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3020.t1 is derived from g455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5363644	5366739	.	+	.	Ledus.S1G044100
Ledus.S1	AUGUSTUS	transcript	5363644	5366739	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	start_codon	5363644	5363646	.	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5363644	5363730	0.98	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5363644	5363730	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	intron	5363731	5364181	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5364182	5364244	1	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5364182	5364244	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	intron	5364245	5364358	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5364359	5364442	1	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5364359	5364442	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	intron	5364443	5364585	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5364586	5364693	1	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5364586	5364693	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	intron	5364694	5364838	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5364839	5365011	1	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5364839	5365011	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	intron	5365012	5365140	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5365141	5365252	0.8	+	1	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5365141	5365252	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	intron	5365253	5365370	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5365371	5365451	1	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5365371	5365451	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	intron	5365452	5365551	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5365552	5365614	1	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5365552	5365614	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	intron	5365615	5365701	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5365702	5365803	1	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5365702	5365803	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	intron	5365804	5365928	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5365929	5366053	1	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5365929	5366053	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	intron	5366054	5366203	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5366204	5366414	1	+	1	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5366204	5366414	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	intron	5366415	5366511	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5366512	5366586	1	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5366512	5366586	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	intron	5366587	5366691	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	CDS	5366692	5366739	0.96	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	exon	5366692	5366739	.	+	.	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
Ledus.S1	AUGUSTUS	stop_codon	5366740	5366742	.	+	0	transcript_id "Ledus.S1G044100.t1"; gene_id "Ledus.S1G044100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1549.t1 is derived from g8410.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10885504	10886876	.	-	.	Ledus.S2G143100
Ledus.S2	AUGUSTUS	transcript	10885504	10886876	.	-	.	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	stop_codon	10885501	10885503	.	-	0	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	CDS	10885504	10886172	0.93	-	0	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	exon	10885504	10886172	.	-	.	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	intron	10886173	10886318	.	-	.	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	CDS	10886319	10886405	1	-	0	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	exon	10886319	10886405	.	-	.	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	intron	10886406	10886488	.	-	.	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	CDS	10886489	10886564	1	-	1	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	exon	10886489	10886564	.	-	.	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	intron	10886565	10886662	.	-	.	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	CDS	10886663	10886775	1	-	0	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	exon	10886663	10886775	.	-	.	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	intron	10886776	10886870	.	-	.	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	CDS	10886871	10886876	1	-	0	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	exon	10886871	10886876	.	-	.	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	start_codon	10886874	10886876	.	-	0	transcript_id "Ledus.S2G143100.t1"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	transcript	10885504	10886876	.	-	.	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	stop_codon	10885501	10885503	.	-	0	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	CDS	10885504	10886172	0.95	-	0	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	exon	10885504	10886172	.	-	.	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	intron	10886173	10886318	.	-	.	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	CDS	10886319	10886405	1	-	0	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	exon	10886319	10886405	.	-	.	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	intron	10886406	10886488	.	-	.	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	CDS	10886489	10886564	1	-	1	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	exon	10886489	10886564	.	-	.	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	intron	10886565	10886662	.	-	.	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	CDS	10886663	10886772	0.99	-	0	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	exon	10886663	10886772	.	-	.	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	intron	10886773	10886870	.	-	.	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	CDS	10886871	10886876	0.99	-	0	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	exon	10886871	10886876	.	-	.	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
Ledus.S2	AUGUSTUS	start_codon	10886874	10886876	.	-	0	transcript_id "Ledus.S2G143100.t2"; gene_id "Ledus.S2G143100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7787.t1 is derived from g12458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6669142	6669372	.	-	.	Ledus.S5G056500
Ledus.S5	AUGUSTUS	transcript	6669142	6669372	.	-	.	transcript_id "Ledus.S5G056500.t1"; gene_id "Ledus.S5G056500"
Ledus.S5	AUGUSTUS	stop_codon	6669139	6669141	.	-	0	transcript_id "Ledus.S5G056500.t1"; gene_id "Ledus.S5G056500"
Ledus.S5	AUGUSTUS	CDS	6669142	6669372	0.98	-	0	transcript_id "Ledus.S5G056500.t1"; gene_id "Ledus.S5G056500"
Ledus.S5	AUGUSTUS	exon	6669142	6669372	.	-	.	transcript_id "Ledus.S5G056500.t1"; gene_id "Ledus.S5G056500"
Ledus.S5	AUGUSTUS	start_codon	6669370	6669372	.	-	0	transcript_id "Ledus.S5G056500.t1"; gene_id "Ledus.S5G056500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10008.t1 is derived from g11038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11843545	11843751	.	-	.	Ledus.S3G148500
Ledus.S3	AUGUSTUS	transcript	11843545	11843751	.	-	.	transcript_id "Ledus.S3G148500.t1"; gene_id "Ledus.S3G148500"
Ledus.S3	AUGUSTUS	stop_codon	11843542	11843544	.	-	0	transcript_id "Ledus.S3G148500.t1"; gene_id "Ledus.S3G148500"
Ledus.S3	AUGUSTUS	CDS	11843545	11843751	0.4	-	0	transcript_id "Ledus.S3G148500.t1"; gene_id "Ledus.S3G148500"
Ledus.S3	AUGUSTUS	exon	11843545	11843751	.	-	.	transcript_id "Ledus.S3G148500.t1"; gene_id "Ledus.S3G148500"
Ledus.S3	AUGUSTUS	start_codon	11843749	11843751	.	-	0	transcript_id "Ledus.S3G148500.t1"; gene_id "Ledus.S3G148500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6110.t1 is derived from g3553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28946215	28947598	.	-	.	Ledus.S1G353100
Ledus.S1	AUGUSTUS	transcript	28946215	28947598	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	stop_codon	28946212	28946214	.	-	0	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	CDS	28946215	28946365	1	-	1	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	exon	28946215	28946365	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	intron	28946366	28946500	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	CDS	28946501	28946598	1	-	0	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	exon	28946501	28946598	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	intron	28946599	28946728	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	CDS	28946729	28946917	0.99	-	0	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	exon	28946729	28946917	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	intron	28946918	28947018	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	CDS	28947019	28947092	0.99	-	2	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	exon	28947019	28947092	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	intron	28947093	28947176	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	CDS	28947177	28947264	1	-	0	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	exon	28947177	28947264	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	intron	28947265	28947342	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	CDS	28947343	28947470	1	-	2	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	exon	28947343	28947470	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	intron	28947471	28947546	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	CDS	28947547	28947598	0.79	-	0	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	exon	28947547	28947598	.	-	.	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
Ledus.S1	AUGUSTUS	start_codon	28947596	28947598	.	-	0	transcript_id "Ledus.S1G353100.t1"; gene_id "Ledus.S1G353100"
# This transcript jg897.t2 is derived from g7758.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg897.t3 is derived from g7758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg898.t1 is derived from g7759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6017461	6024060	.	-	.	Ledus.S2G078000
Ledus.S2	AUGUSTUS	transcript	6017461	6024060	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	stop_codon	6017458	6017460	.	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6017461	6018192	1	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6017461	6018192	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6018193	6018281	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6018282	6018466	1	-	2	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6018282	6018466	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6018467	6018551	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6018552	6018698	1	-	2	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6018552	6018698	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6018699	6018785	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6018786	6018915	1	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6018786	6018915	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6018916	6019010	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6019011	6019149	0.99	-	1	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6019011	6019149	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6019150	6019267	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6019268	6019473	0.97	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6019268	6019473	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6019474	6019560	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6019561	6019767	1	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6019561	6019767	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6019768	6019895	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6019896	6020054	1	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6019896	6020054	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6020055	6020152	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6020153	6020230	1	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6020153	6020230	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6020231	6020342	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6020343	6020432	1	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6020343	6020432	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6020433	6020527	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6020528	6020680	1	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6020528	6020680	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6020681	6020801	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6020802	6020920	1	-	2	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6020802	6020920	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6020921	6021005	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6021006	6021144	1	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6021006	6021144	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6021145	6021271	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6021272	6021375	1	-	2	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6021272	6021375	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6021376	6021493	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6021494	6021578	0.94	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6021494	6021578	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6021579	6021685	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6021686	6021699	1	-	2	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6021686	6021699	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6021700	6021888	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6021889	6021952	0.96	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6021889	6021952	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6021953	6022056	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6022057	6022222	0.96	-	1	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6022057	6022222	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6022223	6022413	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6022414	6022441	1	-	2	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6022414	6022441	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6022442	6022532	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6022533	6022689	1	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6022533	6022689	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6022690	6022776	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6022777	6022920	1	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6022777	6022920	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6022921	6023017	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6023018	6023122	1	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6023018	6023122	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	intron	6023123	6023334	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	CDS	6023335	6024060	0.83	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	exon	6023335	6024060	.	-	.	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
Ledus.S2	AUGUSTUS	start_codon	6024058	6024060	.	-	0	transcript_id "Ledus.S2G078000.t1"; gene_id "Ledus.S2G078000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1562.t1 is derived from g8423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10962803	10967250	.	+	.	Ledus.S2G144400
Ledus.S2	AUGUSTUS	transcript	10962803	10967250	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	start_codon	10962803	10962805	.	+	0	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10962803	10962959	0.92	+	0	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10962803	10962959	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10962960	10963114	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10963115	10963173	1	+	2	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10963115	10963173	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10963174	10963255	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10963256	10963340	1	+	0	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10963256	10963340	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10963341	10963473	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10963474	10963586	1	+	2	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10963474	10963586	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10963587	10963673	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10963674	10963742	1	+	0	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10963674	10963742	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10963743	10963992	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10963993	10964721	0.74	+	0	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10963993	10964721	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10964722	10965070	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10965071	10965711	1	+	0	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10965071	10965711	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10965712	10965850	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10965851	10965915	1	+	1	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10965851	10965915	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10965916	10965984	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10965985	10966064	1	+	2	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10965985	10966064	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10966065	10966150	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10966151	10966255	0.97	+	0	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10966151	10966255	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10966256	10966356	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10966357	10966496	1	+	0	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10966357	10966496	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10966497	10966585	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10966586	10966729	1	+	1	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10966586	10966729	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10966730	10966795	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10966796	10966948	1	+	1	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10966796	10966948	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	intron	10966949	10967036	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	CDS	10967037	10967250	1	+	1	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	exon	10967037	10967250	.	+	.	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
Ledus.S2	AUGUSTUS	stop_codon	10967251	10967253	.	+	0	transcript_id "Ledus.S2G144400.t1"; gene_id "Ledus.S2G144400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3029.t1 is derived from g464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5388080	5390059	.	+	.	Ledus.S1G045000
Ledus.S1	AUGUSTUS	transcript	5388080	5390059	.	+	.	transcript_id "Ledus.S1G045000.t1"; gene_id "Ledus.S1G045000"
Ledus.S1	AUGUSTUS	start_codon	5388080	5388082	.	+	0	transcript_id "Ledus.S1G045000.t1"; gene_id "Ledus.S1G045000"
Ledus.S1	AUGUSTUS	CDS	5388080	5390059	0.99	+	0	transcript_id "Ledus.S1G045000.t1"; gene_id "Ledus.S1G045000"
Ledus.S1	AUGUSTUS	exon	5388080	5390059	.	+	.	transcript_id "Ledus.S1G045000.t1"; gene_id "Ledus.S1G045000"
Ledus.S1	AUGUSTUS	stop_codon	5390060	5390062	.	+	0	transcript_id "Ledus.S1G045000.t1"; gene_id "Ledus.S1G045000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8086.t1 is derived from g12757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9098129	9099781	.	+	.	Ledus.S5G086400
Ledus.S5	AUGUSTUS	transcript	9098129	9099781	.	+	.	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	start_codon	9098129	9098131	.	+	0	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	CDS	9098129	9098200	0.96	+	0	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	exon	9098129	9098200	.	+	.	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	intron	9098201	9098294	.	+	.	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	CDS	9098295	9098356	1	+	0	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	exon	9098295	9098356	.	+	.	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	intron	9098357	9099010	.	+	.	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	CDS	9099011	9099105	0.91	+	1	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	exon	9099011	9099105	.	+	.	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	intron	9099106	9099198	.	+	.	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	CDS	9099199	9099536	0.59	+	2	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	exon	9099199	9099536	.	+	.	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	intron	9099537	9099685	.	+	.	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	CDS	9099686	9099781	0.75	+	0	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	exon	9099686	9099781	.	+	.	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
Ledus.S5	AUGUSTUS	stop_codon	9099782	9099784	.	+	0	transcript_id "Ledus.S5G086400.t1"; gene_id "Ledus.S5G086400"
# This transcript jg12074.t2 is derived from g5693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12075.t1 is derived from g5694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9349415	9351248	.	+	.	Ledus.S4G123100
Ledus.S4	AUGUSTUS	transcript	9349415	9351248	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	start_codon	9349415	9349417	.	+	0	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	CDS	9349415	9349417	0.97	+	0	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	exon	9349415	9349417	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	intron	9349418	9349584	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	CDS	9349585	9349729	1	+	0	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	exon	9349585	9349729	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	intron	9349730	9349837	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	CDS	9349838	9349915	1	+	2	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	exon	9349838	9349915	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	intron	9349916	9350059	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	CDS	9350060	9350172	1	+	2	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	exon	9350060	9350172	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	intron	9350173	9350298	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	CDS	9350299	9350402	0.99	+	0	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	exon	9350299	9350402	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	intron	9350403	9350507	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	CDS	9350508	9350784	0.93	+	1	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	exon	9350508	9350784	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	intron	9350785	9351061	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	CDS	9351062	9351078	0.94	+	0	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	exon	9351062	9351078	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	intron	9351079	9351232	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	CDS	9351233	9351248	0.33	+	1	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	exon	9351233	9351248	.	+	.	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
Ledus.S4	AUGUSTUS	stop_codon	9351249	9351251	.	+	0	transcript_id "Ledus.S4G123100.t1"; gene_id "Ledus.S4G123100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10817.t1 is derived from g11849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18021069	18026031	.	+	.	Ledus.S3G229400
Ledus.S3	AUGUSTUS	transcript	18021069	18026031	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	start_codon	18021069	18021071	.	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18021069	18021122	0.99	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18021069	18021122	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18021123	18021266	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18021267	18021352	1	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18021267	18021352	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18021353	18021653	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18021654	18021744	1	+	1	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18021654	18021744	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18021745	18021919	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18021920	18022014	1	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18021920	18022014	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18022015	18022166	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18022167	18022224	1	+	1	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18022167	18022224	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18022225	18022485	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18022486	18022688	1	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18022486	18022688	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18022689	18022797	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18022798	18022855	1	+	1	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18022798	18022855	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18022856	18023065	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18023066	18023106	1	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18023066	18023106	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18023107	18023250	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18023251	18023325	1	+	1	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18023251	18023325	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18023326	18023496	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18023497	18023540	1	+	1	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18023497	18023540	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18023541	18023646	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18023647	18023734	0.73	+	2	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18023647	18023734	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18023735	18023876	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18023877	18023943	1	+	1	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18023877	18023943	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18023944	18024107	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18024108	18024251	1	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18024108	18024251	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18024252	18024525	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18024526	18024741	1	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18024526	18024741	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18024742	18024923	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18024924	18025085	1	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18024924	18025085	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18025086	18025235	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18025236	18025313	1	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18025236	18025313	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18025314	18025406	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18025407	18025460	0.38	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18025407	18025460	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18025461	18025829	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18025830	18025880	0.45	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18025830	18025880	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	intron	18025881	18025971	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	CDS	18025972	18026031	0.45	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	exon	18025972	18026031	.	+	.	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
Ledus.S3	AUGUSTUS	stop_codon	18026032	18026034	.	+	0	transcript_id "Ledus.S3G229400.t1"; gene_id "Ledus.S3G229400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10129.t1 is derived from g11159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12957063	12957813	.	-	.	Ledus.S3G160600
Ledus.S3	AUGUSTUS	transcript	12957063	12957813	.	-	.	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	stop_codon	12957060	12957062	.	-	0	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	CDS	12957063	12957144	0.99	-	1	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	exon	12957063	12957144	.	-	.	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	intron	12957145	12957247	.	-	.	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	CDS	12957248	12957312	0.98	-	0	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	exon	12957248	12957312	.	-	.	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	intron	12957313	12957414	.	-	.	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	CDS	12957415	12957452	0.98	-	2	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	exon	12957415	12957452	.	-	.	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	intron	12957453	12957601	.	-	.	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	CDS	12957602	12957689	1	-	0	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	exon	12957602	12957689	.	-	.	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	intron	12957690	12957807	.	-	.	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	CDS	12957808	12957813	0.99	-	0	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	exon	12957808	12957813	.	-	.	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
Ledus.S3	AUGUSTUS	start_codon	12957811	12957813	.	-	0	transcript_id "Ledus.S3G160600.t1"; gene_id "Ledus.S3G160600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1778.t1 is derived from g8641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12446103	12446715	.	+	.	Ledus.S2G166000
Ledus.S2	AUGUSTUS	transcript	12446103	12446715	.	+	.	transcript_id "Ledus.S2G166000.t1"; gene_id "Ledus.S2G166000"
Ledus.S2	AUGUSTUS	start_codon	12446103	12446105	.	+	0	transcript_id "Ledus.S2G166000.t1"; gene_id "Ledus.S2G166000"
Ledus.S2	AUGUSTUS	CDS	12446103	12446230	0.59	+	0	transcript_id "Ledus.S2G166000.t1"; gene_id "Ledus.S2G166000"
Ledus.S2	AUGUSTUS	exon	12446103	12446230	.	+	.	transcript_id "Ledus.S2G166000.t1"; gene_id "Ledus.S2G166000"
Ledus.S2	AUGUSTUS	intron	12446231	12446357	.	+	.	transcript_id "Ledus.S2G166000.t1"; gene_id "Ledus.S2G166000"
Ledus.S2	AUGUSTUS	CDS	12446358	12446715	0.6	+	1	transcript_id "Ledus.S2G166000.t1"; gene_id "Ledus.S2G166000"
Ledus.S2	AUGUSTUS	exon	12446358	12446715	.	+	.	transcript_id "Ledus.S2G166000.t1"; gene_id "Ledus.S2G166000"
Ledus.S2	AUGUSTUS	stop_codon	12446716	12446718	.	+	0	transcript_id "Ledus.S2G166000.t1"; gene_id "Ledus.S2G166000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9708.t1 is derived from g10738.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9233230	9234836	.	-	.	Ledus.S3G118500
Ledus.S3	AUGUSTUS	transcript	9233270	9234836	.	-	.	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	stop_codon	9233267	9233269	.	-	0	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	CDS	9233270	9233338	1	-	0	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	exon	9233270	9233338	.	-	.	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	intron	9233339	9233502	.	-	.	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	CDS	9233503	9233619	1	-	0	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	exon	9233503	9233619	.	-	.	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	intron	9233620	9234076	.	-	.	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	CDS	9234077	9234150	0.65	-	2	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	exon	9234077	9234150	.	-	.	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	intron	9234151	9234214	.	-	.	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	CDS	9234215	9234836	0.28	-	0	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	exon	9234215	9234836	.	-	.	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	start_codon	9234834	9234836	.	-	0	transcript_id "Ledus.S3G118500.t1"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	transcript	9233230	9234836	.	-	.	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	stop_codon	9233227	9233229	.	-	0	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	CDS	9233230	9233328	0.55	-	0	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	exon	9233230	9233328	.	-	.	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	intron	9233329	9233502	.	-	.	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	CDS	9233503	9233619	1	-	0	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	exon	9233503	9233619	.	-	.	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	intron	9233620	9234076	.	-	.	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	CDS	9234077	9234150	0.61	-	2	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	exon	9234077	9234150	.	-	.	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	intron	9234151	9234214	.	-	.	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	CDS	9234215	9234836	0.3	-	0	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	exon	9234215	9234836	.	-	.	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
Ledus.S3	AUGUSTUS	start_codon	9234834	9234836	.	-	0	transcript_id "Ledus.S3G118500.t2"; gene_id "Ledus.S3G118500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5687.t1 is derived from g3126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25892160	25892462	.	+	.	Ledus.S1G310800
Ledus.S1	AUGUSTUS	transcript	25892160	25892462	.	+	.	transcript_id "Ledus.S1G310800.t1"; gene_id "Ledus.S1G310800"
Ledus.S1	AUGUSTUS	start_codon	25892160	25892162	.	+	0	transcript_id "Ledus.S1G310800.t1"; gene_id "Ledus.S1G310800"
Ledus.S1	AUGUSTUS	CDS	25892160	25892462	0.97	+	0	transcript_id "Ledus.S1G310800.t1"; gene_id "Ledus.S1G310800"
Ledus.S1	AUGUSTUS	exon	25892160	25892462	.	+	.	transcript_id "Ledus.S1G310800.t1"; gene_id "Ledus.S1G310800"
Ledus.S1	AUGUSTUS	stop_codon	25892463	25892465	.	+	0	transcript_id "Ledus.S1G310800.t1"; gene_id "Ledus.S1G310800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg803.t1 is derived from g7664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5214208	5216367	.	-	.	Ledus.S2G068500
Ledus.S2	AUGUSTUS	transcript	5214208	5216367	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	stop_codon	5214205	5214207	.	-	0	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	CDS	5214208	5214321	0.65	-	0	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	exon	5214208	5214321	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	intron	5214322	5214396	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	CDS	5214397	5214465	1	-	0	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	exon	5214397	5214465	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	intron	5214466	5214545	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	CDS	5214546	5214608	1	-	0	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	exon	5214546	5214608	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	intron	5214609	5214688	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	CDS	5214689	5214771	1	-	2	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	exon	5214689	5214771	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	intron	5214772	5214842	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	CDS	5214843	5215010	1	-	2	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	exon	5214843	5215010	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	intron	5215011	5215091	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	CDS	5215092	5215163	1	-	2	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	exon	5215092	5215163	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	intron	5215164	5215252	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	CDS	5215253	5215275	1	-	1	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	exon	5215253	5215275	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	intron	5215276	5215366	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	CDS	5215367	5215534	1	-	1	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	exon	5215367	5215534	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	intron	5215535	5215635	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	CDS	5215636	5215673	1	-	0	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	exon	5215636	5215673	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	intron	5215674	5215806	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	CDS	5215807	5215823	1	-	2	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	exon	5215807	5215823	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	intron	5215824	5215914	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	CDS	5215915	5215989	1	-	2	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	exon	5215915	5215989	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	intron	5215990	5216084	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	CDS	5216085	5216367	0.99	-	0	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	exon	5216085	5216367	.	-	.	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
Ledus.S2	AUGUSTUS	start_codon	5216365	5216367	.	-	0	transcript_id "Ledus.S2G068500.t1"; gene_id "Ledus.S2G068500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3158.t1 is derived from g593.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6397924	6398343	.	-	.	Ledus.S1G057900
Ledus.S1	AUGUSTUS	transcript	6397924	6398343	.	-	.	transcript_id "Ledus.S1G057900.t1"; gene_id "Ledus.S1G057900"
Ledus.S1	AUGUSTUS	stop_codon	6397921	6397923	.	-	0	transcript_id "Ledus.S1G057900.t1"; gene_id "Ledus.S1G057900"
Ledus.S1	AUGUSTUS	CDS	6397924	6398343	0.93	-	0	transcript_id "Ledus.S1G057900.t1"; gene_id "Ledus.S1G057900"
Ledus.S1	AUGUSTUS	exon	6397924	6398343	.	-	.	transcript_id "Ledus.S1G057900.t1"; gene_id "Ledus.S1G057900"
Ledus.S1	AUGUSTUS	start_codon	6398341	6398343	.	-	0	transcript_id "Ledus.S1G057900.t1"; gene_id "Ledus.S1G057900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5433.t1 is derived from g2872.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24138483	24139163	.	-	.	Ledus.S1G285400
Ledus.S1	AUGUSTUS	transcript	24138483	24139163	.	-	.	transcript_id "Ledus.S1G285400.t1"; gene_id "Ledus.S1G285400"
Ledus.S1	AUGUSTUS	stop_codon	24138480	24138482	.	-	0	transcript_id "Ledus.S1G285400.t1"; gene_id "Ledus.S1G285400"
Ledus.S1	AUGUSTUS	CDS	24138483	24139163	0.48	-	0	transcript_id "Ledus.S1G285400.t1"; gene_id "Ledus.S1G285400"
Ledus.S1	AUGUSTUS	exon	24138483	24139163	.	-	.	transcript_id "Ledus.S1G285400.t1"; gene_id "Ledus.S1G285400"
Ledus.S1	AUGUSTUS	start_codon	24139161	24139163	.	-	0	transcript_id "Ledus.S1G285400.t1"; gene_id "Ledus.S1G285400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7578.t1 is derived from g12249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4147600	4148479	.	+	.	Ledus.S5G035600
Ledus.S5	AUGUSTUS	transcript	4147600	4148479	.	+	.	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	start_codon	4147600	4147602	.	+	0	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	CDS	4147600	4147701	0.89	+	0	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	exon	4147600	4147701	.	+	.	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	intron	4147702	4147785	.	+	.	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	CDS	4147786	4147903	1	+	0	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	exon	4147786	4147903	.	+	.	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	intron	4147904	4147989	.	+	.	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	CDS	4147990	4148197	1	+	2	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	exon	4147990	4148197	.	+	.	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	intron	4148198	4148289	.	+	.	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	CDS	4148290	4148479	1	+	1	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	exon	4148290	4148479	.	+	.	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
Ledus.S5	AUGUSTUS	stop_codon	4148480	4148482	.	+	0	transcript_id "Ledus.S5G035600.t1"; gene_id "Ledus.S5G035600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9907.t1 is derived from g10937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11090210	11090797	.	-	.	Ledus.S3G138400
Ledus.S3	AUGUSTUS	transcript	11090210	11090797	.	-	.	transcript_id "Ledus.S3G138400.t1"; gene_id "Ledus.S3G138400"
Ledus.S3	AUGUSTUS	stop_codon	11090207	11090209	.	-	0	transcript_id "Ledus.S3G138400.t1"; gene_id "Ledus.S3G138400"
Ledus.S3	AUGUSTUS	CDS	11090210	11090797	1	-	0	transcript_id "Ledus.S3G138400.t1"; gene_id "Ledus.S3G138400"
Ledus.S3	AUGUSTUS	exon	11090210	11090797	.	-	.	transcript_id "Ledus.S3G138400.t1"; gene_id "Ledus.S3G138400"
Ledus.S3	AUGUSTUS	start_codon	11090795	11090797	.	-	0	transcript_id "Ledus.S3G138400.t1"; gene_id "Ledus.S3G138400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3722.t1 is derived from g1158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11189266	11191248	.	-	.	Ledus.S1G114300
Ledus.S1	AUGUSTUS	transcript	11189266	11191248	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	stop_codon	11189263	11189265	.	-	0	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	CDS	11189266	11189280	0.98	-	0	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	exon	11189266	11189280	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	intron	11189281	11189374	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	CDS	11189375	11189584	0.67	-	0	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	exon	11189375	11189584	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	intron	11189585	11189696	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	CDS	11189697	11189781	0.98	-	1	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	exon	11189697	11189781	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	intron	11189782	11189887	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	CDS	11189888	11189979	0.94	-	0	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	exon	11189888	11189979	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	intron	11189980	11190203	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	CDS	11190204	11190314	1	-	0	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	exon	11190204	11190314	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	intron	11190315	11190421	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	CDS	11190422	11190496	0.99	-	0	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	exon	11190422	11190496	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	intron	11190497	11190644	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	CDS	11190645	11190743	1	-	0	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	exon	11190645	11190743	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	intron	11190744	11190817	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	CDS	11190818	11191025	0.99	-	1	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	exon	11190818	11191025	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	intron	11191026	11191114	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	CDS	11191115	11191248	0.96	-	0	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	exon	11191115	11191248	.	-	.	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
Ledus.S1	AUGUSTUS	start_codon	11191246	11191248	.	-	0	transcript_id "Ledus.S1G114300.t1"; gene_id "Ledus.S1G114300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3761.t1 is derived from g1197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11695181	11696364	.	-	.	Ledus.S1G118200
Ledus.S1	AUGUSTUS	transcript	11695181	11696364	.	-	.	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	stop_codon	11695178	11695180	.	-	0	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	CDS	11695181	11695249	0.74	-	0	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	exon	11695181	11695249	.	-	.	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	intron	11695250	11695331	.	-	.	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	CDS	11695332	11695385	0.74	-	0	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	exon	11695332	11695385	.	-	.	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	intron	11695386	11695545	.	-	.	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	CDS	11695546	11695576	0.7	-	1	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	exon	11695546	11695576	.	-	.	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	intron	11695577	11695922	.	-	.	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	CDS	11695923	11695930	0.75	-	0	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	exon	11695923	11695930	.	-	.	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	intron	11695931	11696115	.	-	.	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	CDS	11696116	11696210	1	-	2	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	exon	11696116	11696210	.	-	.	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	intron	11696211	11696306	.	-	.	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	CDS	11696307	11696364	0.64	-	0	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	exon	11696307	11696364	.	-	.	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
Ledus.S1	AUGUSTUS	start_codon	11696362	11696364	.	-	0	transcript_id "Ledus.S1G118200.t1"; gene_id "Ledus.S1G118200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg723.t1 is derived from g7584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4469275	4470513	.	-	.	Ledus.S2G060500
Ledus.S2	AUGUSTUS	transcript	4469275	4470513	.	-	.	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	stop_codon	4469272	4469274	.	-	0	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	CDS	4469275	4469579	0.88	-	2	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	exon	4469275	4469579	.	-	.	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	intron	4469580	4469687	.	-	.	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	CDS	4469688	4469835	1	-	0	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	exon	4469688	4469835	.	-	.	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	intron	4469836	4469972	.	-	.	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	CDS	4469973	4470145	1	-	2	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	exon	4469973	4470145	.	-	.	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	intron	4470146	4470224	.	-	.	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	CDS	4470225	4470513	0.88	-	0	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	exon	4470225	4470513	.	-	.	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
Ledus.S2	AUGUSTUS	start_codon	4470511	4470513	.	-	0	transcript_id "Ledus.S2G060500.t1"; gene_id "Ledus.S2G060500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12681.t1 is derived from g6303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13849656	13850570	.	-	.	Ledus.S4G183700
Ledus.S4	AUGUSTUS	transcript	13849656	13850570	.	-	.	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	stop_codon	13849653	13849655	.	-	0	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	CDS	13849656	13849750	1	-	2	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	exon	13849656	13849750	.	-	.	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	intron	13849751	13849845	.	-	.	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	CDS	13849846	13849887	0.81	-	2	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	exon	13849846	13849887	.	-	.	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	intron	13849888	13850041	.	-	.	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	CDS	13850042	13850098	0.71	-	2	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	exon	13850042	13850098	.	-	.	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	intron	13850099	13850177	.	-	.	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	CDS	13850178	13850253	1	-	0	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	exon	13850178	13850253	.	-	.	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	intron	13850254	13850330	.	-	.	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	CDS	13850331	13850459	0.92	-	0	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	exon	13850331	13850459	.	-	.	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	intron	13850460	13850567	.	-	.	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	CDS	13850568	13850570	0.56	-	0	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	exon	13850568	13850570	.	-	.	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
Ledus.S4	AUGUSTUS	start_codon	13850568	13850570	.	-	0	transcript_id "Ledus.S4G183700.t1"; gene_id "Ledus.S4G183700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3206.t1 is derived from g641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6827337	6828500	.	+	.	Ledus.S1G062700
Ledus.S1	AUGUSTUS	transcript	6827337	6828500	.	+	.	transcript_id "Ledus.S1G062700.t1"; gene_id "Ledus.S1G062700"
Ledus.S1	AUGUSTUS	start_codon	6827337	6827339	.	+	0	transcript_id "Ledus.S1G062700.t1"; gene_id "Ledus.S1G062700"
Ledus.S1	AUGUSTUS	CDS	6827337	6828500	0.99	+	0	transcript_id "Ledus.S1G062700.t1"; gene_id "Ledus.S1G062700"
Ledus.S1	AUGUSTUS	exon	6827337	6828500	.	+	.	transcript_id "Ledus.S1G062700.t1"; gene_id "Ledus.S1G062700"
Ledus.S1	AUGUSTUS	stop_codon	6828501	6828503	.	+	0	transcript_id "Ledus.S1G062700.t1"; gene_id "Ledus.S1G062700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8705.t1 is derived from g9735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1515295	1515778	.	-	.	Ledus.S3G018200
Ledus.S3	AUGUSTUS	transcript	1515295	1515778	.	-	.	transcript_id "Ledus.S3G018200.t1"; gene_id "Ledus.S3G018200"
Ledus.S3	AUGUSTUS	stop_codon	1515292	1515294	.	-	0	transcript_id "Ledus.S3G018200.t1"; gene_id "Ledus.S3G018200"
Ledus.S3	AUGUSTUS	CDS	1515295	1515334	0.63	-	1	transcript_id "Ledus.S3G018200.t1"; gene_id "Ledus.S3G018200"
Ledus.S3	AUGUSTUS	exon	1515295	1515334	.	-	.	transcript_id "Ledus.S3G018200.t1"; gene_id "Ledus.S3G018200"
Ledus.S3	AUGUSTUS	intron	1515335	1515422	.	-	.	transcript_id "Ledus.S3G018200.t1"; gene_id "Ledus.S3G018200"
Ledus.S3	AUGUSTUS	CDS	1515423	1515571	0.97	-	0	transcript_id "Ledus.S3G018200.t1"; gene_id "Ledus.S3G018200"
Ledus.S3	AUGUSTUS	exon	1515423	1515571	.	-	.	transcript_id "Ledus.S3G018200.t1"; gene_id "Ledus.S3G018200"
Ledus.S3	AUGUSTUS	intron	1515572	1515655	.	-	.	transcript_id "Ledus.S3G018200.t1"; gene_id "Ledus.S3G018200"
Ledus.S3	AUGUSTUS	CDS	1515656	1515778	0.97	-	0	transcript_id "Ledus.S3G018200.t1"; gene_id "Ledus.S3G018200"
Ledus.S3	AUGUSTUS	exon	1515656	1515778	.	-	.	transcript_id "Ledus.S3G018200.t1"; gene_id "Ledus.S3G018200"
Ledus.S3	AUGUSTUS	start_codon	1515776	1515778	.	-	0	transcript_id "Ledus.S3G018200.t1"; gene_id "Ledus.S3G018200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4104.t1 is derived from g1540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14702595	14704266	.	-	.	Ledus.S1G152500
Ledus.S1	AUGUSTUS	transcript	14702595	14704266	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	stop_codon	14702592	14702594	.	-	0	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	CDS	14702595	14702723	1	-	0	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	exon	14702595	14702723	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	intron	14702724	14702810	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	CDS	14702811	14702887	1	-	2	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	exon	14702811	14702887	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	intron	14702888	14703003	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	CDS	14703004	14703147	1	-	2	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	exon	14703004	14703147	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	intron	14703148	14703219	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	CDS	14703220	14703338	1	-	1	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	exon	14703220	14703338	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	intron	14703339	14703416	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	CDS	14703417	14703505	1	-	0	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	exon	14703417	14703505	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	intron	14703506	14703591	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	CDS	14703592	14703663	1	-	0	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	exon	14703592	14703663	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	intron	14703664	14703756	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	CDS	14703757	14703847	1	-	1	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	exon	14703757	14703847	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	intron	14703848	14703921	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	CDS	14703922	14704075	1	-	2	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	exon	14703922	14704075	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	intron	14704076	14704151	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	CDS	14704152	14704266	0.78	-	0	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	exon	14704152	14704266	.	-	.	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
Ledus.S1	AUGUSTUS	start_codon	14704264	14704266	.	-	0	transcript_id "Ledus.S1G152500.t1"; gene_id "Ledus.S1G152500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13039.t1 is derived from g6849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3778119	3778713	.	-	.	Ledus.S6G010100
Ledus.S6	AUGUSTUS	transcript	3778119	3778713	.	-	.	transcript_id "Ledus.S6G010100.t1"; gene_id "Ledus.S6G010100"
Ledus.S6	AUGUSTUS	stop_codon	3778116	3778118	.	-	0	transcript_id "Ledus.S6G010100.t1"; gene_id "Ledus.S6G010100"
Ledus.S6	AUGUSTUS	CDS	3778119	3778287	0.78	-	1	transcript_id "Ledus.S6G010100.t1"; gene_id "Ledus.S6G010100"
Ledus.S6	AUGUSTUS	exon	3778119	3778287	.	-	.	transcript_id "Ledus.S6G010100.t1"; gene_id "Ledus.S6G010100"
Ledus.S6	AUGUSTUS	intron	3778288	3778573	.	-	.	transcript_id "Ledus.S6G010100.t1"; gene_id "Ledus.S6G010100"
Ledus.S6	AUGUSTUS	CDS	3778574	3778713	0.35	-	0	transcript_id "Ledus.S6G010100.t1"; gene_id "Ledus.S6G010100"
Ledus.S6	AUGUSTUS	exon	3778574	3778713	.	-	.	transcript_id "Ledus.S6G010100.t1"; gene_id "Ledus.S6G010100"
Ledus.S6	AUGUSTUS	start_codon	3778711	3778713	.	-	0	transcript_id "Ledus.S6G010100.t1"; gene_id "Ledus.S6G010100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11122.t1 is derived from g4740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2009499	2011742	.	+	.	Ledus.S4G027800
Ledus.S4	AUGUSTUS	transcript	2009499	2011742	.	+	.	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	start_codon	2009499	2009501	.	+	0	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	CDS	2009499	2010891	0.15	+	0	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	exon	2009499	2010891	.	+	.	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	intron	2010892	2010977	.	+	.	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	CDS	2010978	2011084	0.75	+	2	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	exon	2010978	2011084	.	+	.	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	intron	2011085	2011436	.	+	.	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	CDS	2011437	2011499	1	+	0	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	exon	2011437	2011499	.	+	.	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	intron	2011500	2011706	.	+	.	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	CDS	2011707	2011742	1	+	0	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	exon	2011707	2011742	.	+	.	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
Ledus.S4	AUGUSTUS	stop_codon	2011743	2011745	.	+	0	transcript_id "Ledus.S4G027800.t1"; gene_id "Ledus.S4G027800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13053.t1 is derived from g6863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4198769	4199637	.	-	.	Ledus.S6G011500
Ledus.S6	AUGUSTUS	transcript	4198769	4199637	.	-	.	transcript_id "Ledus.S6G011500.t1"; gene_id "Ledus.S6G011500"
Ledus.S6	AUGUSTUS	stop_codon	4198766	4198768	.	-	0	transcript_id "Ledus.S6G011500.t1"; gene_id "Ledus.S6G011500"
Ledus.S6	AUGUSTUS	CDS	4198769	4198885	0.65	-	0	transcript_id "Ledus.S6G011500.t1"; gene_id "Ledus.S6G011500"
Ledus.S6	AUGUSTUS	exon	4198769	4198885	.	-	.	transcript_id "Ledus.S6G011500.t1"; gene_id "Ledus.S6G011500"
Ledus.S6	AUGUSTUS	intron	4198886	4199241	.	-	.	transcript_id "Ledus.S6G011500.t1"; gene_id "Ledus.S6G011500"
Ledus.S6	AUGUSTUS	CDS	4199242	4199637	0.4	-	0	transcript_id "Ledus.S6G011500.t1"; gene_id "Ledus.S6G011500"
Ledus.S6	AUGUSTUS	exon	4199242	4199637	.	-	.	transcript_id "Ledus.S6G011500.t1"; gene_id "Ledus.S6G011500"
Ledus.S6	AUGUSTUS	start_codon	4199635	4199637	.	-	0	transcript_id "Ledus.S6G011500.t1"; gene_id "Ledus.S6G011500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6029.t1 is derived from g3472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28525579	28526021	.	+	.	Ledus.S1G345000
Ledus.S1	AUGUSTUS	transcript	28525579	28526021	.	+	.	transcript_id "Ledus.S1G345000.t1"; gene_id "Ledus.S1G345000"
Ledus.S1	AUGUSTUS	start_codon	28525579	28525581	.	+	0	transcript_id "Ledus.S1G345000.t1"; gene_id "Ledus.S1G345000"
Ledus.S1	AUGUSTUS	CDS	28525579	28525716	0.01	+	0	transcript_id "Ledus.S1G345000.t1"; gene_id "Ledus.S1G345000"
Ledus.S1	AUGUSTUS	exon	28525579	28525716	.	+	.	transcript_id "Ledus.S1G345000.t1"; gene_id "Ledus.S1G345000"
Ledus.S1	AUGUSTUS	intron	28525717	28525955	.	+	.	transcript_id "Ledus.S1G345000.t1"; gene_id "Ledus.S1G345000"
Ledus.S1	AUGUSTUS	CDS	28525956	28526021	1	+	0	transcript_id "Ledus.S1G345000.t1"; gene_id "Ledus.S1G345000"
Ledus.S1	AUGUSTUS	exon	28525956	28526021	.	+	.	transcript_id "Ledus.S1G345000.t1"; gene_id "Ledus.S1G345000"
Ledus.S1	AUGUSTUS	stop_codon	28526022	28526024	.	+	0	transcript_id "Ledus.S1G345000.t1"; gene_id "Ledus.S1G345000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12362.t1 is derived from g5983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11437952	11438506	.	+	.	Ledus.S4G151800
Ledus.S4	AUGUSTUS	transcript	11437952	11438506	.	+	.	transcript_id "Ledus.S4G151800.t1"; gene_id "Ledus.S4G151800"
Ledus.S4	AUGUSTUS	start_codon	11437952	11437954	.	+	0	transcript_id "Ledus.S4G151800.t1"; gene_id "Ledus.S4G151800"
Ledus.S4	AUGUSTUS	CDS	11437952	11438147	0.72	+	0	transcript_id "Ledus.S4G151800.t1"; gene_id "Ledus.S4G151800"
Ledus.S4	AUGUSTUS	exon	11437952	11438147	.	+	.	transcript_id "Ledus.S4G151800.t1"; gene_id "Ledus.S4G151800"
Ledus.S4	AUGUSTUS	intron	11438148	11438234	.	+	.	transcript_id "Ledus.S4G151800.t1"; gene_id "Ledus.S4G151800"
Ledus.S4	AUGUSTUS	CDS	11438235	11438506	0.58	+	2	transcript_id "Ledus.S4G151800.t1"; gene_id "Ledus.S4G151800"
Ledus.S4	AUGUSTUS	exon	11438235	11438506	.	+	.	transcript_id "Ledus.S4G151800.t1"; gene_id "Ledus.S4G151800"
Ledus.S4	AUGUSTUS	stop_codon	11438507	11438509	.	+	0	transcript_id "Ledus.S4G151800.t1"; gene_id "Ledus.S4G151800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg145.t1 is derived from g7006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	265509	267481	.	+	.	Ledus.S2G002700
Ledus.S2	AUGUSTUS	transcript	265509	267481	.	+	.	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	start_codon	265509	265511	.	+	0	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	CDS	265509	266159	0.89	+	0	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	exon	265509	266159	.	+	.	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	intron	266160	266268	.	+	.	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	CDS	266269	266346	1	+	0	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	exon	266269	266346	.	+	.	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	intron	266347	266693	.	+	.	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	CDS	266694	266741	1	+	0	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	exon	266694	266741	.	+	.	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	intron	266742	266891	.	+	.	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	CDS	266892	266956	1	+	0	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	exon	266892	266956	.	+	.	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	intron	266957	267158	.	+	.	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	CDS	267159	267236	1	+	1	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	exon	267159	267236	.	+	.	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	intron	267237	267378	.	+	.	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	CDS	267379	267481	1	+	1	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	exon	267379	267481	.	+	.	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
Ledus.S2	AUGUSTUS	stop_codon	267482	267484	.	+	0	transcript_id "Ledus.S2G002700.t1"; gene_id "Ledus.S2G002700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12543.t1 is derived from g6165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12808523	12811709	.	+	.	Ledus.S4G169900
Ledus.S4	AUGUSTUS	transcript	12808523	12811709	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	start_codon	12808523	12808525	.	+	0	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	CDS	12808523	12808887	0.97	+	0	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	exon	12808523	12808887	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	intron	12808888	12809067	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	CDS	12809068	12809365	1	+	1	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	exon	12809068	12809365	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	intron	12809366	12809495	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	CDS	12809496	12809648	1	+	0	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	exon	12809496	12809648	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	intron	12809649	12809783	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	CDS	12809784	12810062	1	+	0	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	exon	12809784	12810062	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	intron	12810063	12810220	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	CDS	12810221	12810406	0.99	+	0	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	exon	12810221	12810406	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	intron	12810407	12810522	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	CDS	12810523	12810653	1	+	0	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	exon	12810523	12810653	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	intron	12810654	12810784	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	CDS	12810785	12810977	1	+	1	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	exon	12810785	12810977	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	intron	12810978	12811076	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	CDS	12811077	12811145	1	+	0	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	exon	12811077	12811145	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	intron	12811146	12811294	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	CDS	12811295	12811382	1	+	0	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	exon	12811295	12811382	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	intron	12811383	12811503	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	CDS	12811504	12811709	1	+	2	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	exon	12811504	12811709	.	+	.	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
Ledus.S4	AUGUSTUS	stop_codon	12811710	12811712	.	+	0	transcript_id "Ledus.S4G169900.t1"; gene_id "Ledus.S4G169900"
# This transcript jg1428.t2 is derived from g8289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1429.t1 is derived from g8290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10006520	10010453	.	+	.	Ledus.S2G131100
Ledus.S2	AUGUSTUS	transcript	10006520	10010453	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	start_codon	10006520	10006522	.	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10006520	10006578	1	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10006520	10006578	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10006579	10006661	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10006662	10006746	1	+	1	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10006662	10006746	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10006747	10006815	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10006816	10006885	1	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10006816	10006885	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10006886	10006963	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10006964	10007061	1	+	2	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10006964	10007061	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10007062	10007200	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10007201	10007323	0.99	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10007201	10007323	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10007324	10007436	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10007437	10007469	0.98	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10007437	10007469	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10007470	10007570	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10007571	10007629	1	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10007571	10007629	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10007630	10007832	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10007833	10007917	1	+	1	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10007833	10007917	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10007918	10008051	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10008052	10008213	0.95	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10008052	10008213	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10008214	10008331	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10008332	10008389	1	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10008332	10008389	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10008390	10008496	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10008497	10008645	1	+	2	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10008497	10008645	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10008646	10008772	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10008773	10008870	1	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10008773	10008870	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10008871	10008996	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10008997	10009066	1	+	1	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10008997	10009066	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10009067	10009204	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10009205	10009264	1	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10009205	10009264	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10009265	10009346	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10009347	10009403	1	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10009347	10009403	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10009404	10009495	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10009496	10009564	1	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10009496	10009564	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10009565	10009692	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10009693	10009770	1	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10009693	10009770	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10009771	10009856	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10009857	10009958	1	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10009857	10009958	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10009959	10010038	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10010039	10010110	1	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10010039	10010110	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	intron	10010111	10010204	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	CDS	10010205	10010453	0.83	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	exon	10010205	10010453	.	+	.	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
Ledus.S2	AUGUSTUS	stop_codon	10010454	10010456	.	+	0	transcript_id "Ledus.S2G131100.t1"; gene_id "Ledus.S2G131100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10109.t1 is derived from g11139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12863981	12864184	.	-	.	Ledus.S3G158600
Ledus.S3	AUGUSTUS	transcript	12863981	12864184	.	-	.	transcript_id "Ledus.S3G158600.t1"; gene_id "Ledus.S3G158600"
Ledus.S3	AUGUSTUS	stop_codon	12863978	12863980	.	-	0	transcript_id "Ledus.S3G158600.t1"; gene_id "Ledus.S3G158600"
Ledus.S3	AUGUSTUS	CDS	12863981	12864184	0.8	-	0	transcript_id "Ledus.S3G158600.t1"; gene_id "Ledus.S3G158600"
Ledus.S3	AUGUSTUS	exon	12863981	12864184	.	-	.	transcript_id "Ledus.S3G158600.t1"; gene_id "Ledus.S3G158600"
Ledus.S3	AUGUSTUS	start_codon	12864182	12864184	.	-	0	transcript_id "Ledus.S3G158600.t1"; gene_id "Ledus.S3G158600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8110.t1 is derived from g12781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9169247	9169888	.	+	.	Ledus.S5G088800
Ledus.S5	AUGUSTUS	transcript	9169247	9169888	.	+	.	transcript_id "Ledus.S5G088800.t1"; gene_id "Ledus.S5G088800"
Ledus.S5	AUGUSTUS	start_codon	9169247	9169249	.	+	0	transcript_id "Ledus.S5G088800.t1"; gene_id "Ledus.S5G088800"
Ledus.S5	AUGUSTUS	CDS	9169247	9169353	0.37	+	0	transcript_id "Ledus.S5G088800.t1"; gene_id "Ledus.S5G088800"
Ledus.S5	AUGUSTUS	exon	9169247	9169353	.	+	.	transcript_id "Ledus.S5G088800.t1"; gene_id "Ledus.S5G088800"
Ledus.S5	AUGUSTUS	intron	9169354	9169521	.	+	.	transcript_id "Ledus.S5G088800.t1"; gene_id "Ledus.S5G088800"
Ledus.S5	AUGUSTUS	CDS	9169522	9169575	0.59	+	1	transcript_id "Ledus.S5G088800.t1"; gene_id "Ledus.S5G088800"
Ledus.S5	AUGUSTUS	exon	9169522	9169575	.	+	.	transcript_id "Ledus.S5G088800.t1"; gene_id "Ledus.S5G088800"
Ledus.S5	AUGUSTUS	intron	9169576	9169662	.	+	.	transcript_id "Ledus.S5G088800.t1"; gene_id "Ledus.S5G088800"
Ledus.S5	AUGUSTUS	CDS	9169663	9169888	0.36	+	1	transcript_id "Ledus.S5G088800.t1"; gene_id "Ledus.S5G088800"
Ledus.S5	AUGUSTUS	exon	9169663	9169888	.	+	.	transcript_id "Ledus.S5G088800.t1"; gene_id "Ledus.S5G088800"
Ledus.S5	AUGUSTUS	stop_codon	9169889	9169891	.	+	0	transcript_id "Ledus.S5G088800.t1"; gene_id "Ledus.S5G088800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12800.t1 is derived from g6422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14689785	14689994	.	-	.	Ledus.S4G195600
Ledus.S4	AUGUSTUS	transcript	14689785	14689994	.	-	.	transcript_id "Ledus.S4G195600.t1"; gene_id "Ledus.S4G195600"
Ledus.S4	AUGUSTUS	stop_codon	14689782	14689784	.	-	0	transcript_id "Ledus.S4G195600.t1"; gene_id "Ledus.S4G195600"
Ledus.S4	AUGUSTUS	CDS	14689785	14689994	0.88	-	0	transcript_id "Ledus.S4G195600.t1"; gene_id "Ledus.S4G195600"
Ledus.S4	AUGUSTUS	exon	14689785	14689994	.	-	.	transcript_id "Ledus.S4G195600.t1"; gene_id "Ledus.S4G195600"
Ledus.S4	AUGUSTUS	start_codon	14689992	14689994	.	-	0	transcript_id "Ledus.S4G195600.t1"; gene_id "Ledus.S4G195600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3620.t1 is derived from g1056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10234968	10236324	.	+	.	Ledus.S1G104100
Ledus.S1	AUGUSTUS	transcript	10234968	10236324	.	+	.	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	start_codon	10234968	10234970	.	+	0	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	CDS	10234968	10235029	0.79	+	0	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	exon	10234968	10235029	.	+	.	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	intron	10235030	10235103	.	+	.	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	CDS	10235104	10235255	1	+	1	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	exon	10235104	10235255	.	+	.	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	intron	10235256	10235365	.	+	.	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	CDS	10235366	10235748	1	+	2	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	exon	10235366	10235748	.	+	.	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	intron	10235749	10235852	.	+	.	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	CDS	10235853	10235929	0.98	+	0	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	exon	10235853	10235929	.	+	.	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	intron	10235930	10236022	.	+	.	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	CDS	10236023	10236065	0.48	+	1	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	exon	10236023	10236065	.	+	.	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	intron	10236066	10236258	.	+	.	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	CDS	10236259	10236324	0.67	+	0	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	exon	10236259	10236324	.	+	.	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
Ledus.S1	AUGUSTUS	stop_codon	10236325	10236327	.	+	0	transcript_id "Ledus.S1G104100.t1"; gene_id "Ledus.S1G104100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1671.t1 is derived from g8532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11789834	11791852	.	+	.	Ledus.S2G155300
Ledus.S2	AUGUSTUS	transcript	11789834	11791852	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	start_codon	11789834	11789836	.	+	0	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	CDS	11789834	11789839	0.78	+	0	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	exon	11789834	11789839	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	intron	11789840	11789974	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	CDS	11789975	11789982	0.8	+	0	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	exon	11789975	11789982	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	intron	11789983	11790148	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	CDS	11790149	11790307	0.67	+	1	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	exon	11790149	11790307	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	intron	11790308	11790398	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	CDS	11790399	11790686	0.99	+	1	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	exon	11790399	11790686	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	intron	11790687	11790790	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	CDS	11790791	11791037	0.98	+	1	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	exon	11790791	11791037	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	intron	11791038	11791123	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	CDS	11791124	11791282	1	+	0	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	exon	11791124	11791282	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	intron	11791283	11791374	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	CDS	11791375	11791647	1	+	0	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	exon	11791375	11791647	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	intron	11791648	11791732	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	CDS	11791733	11791852	1	+	0	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	exon	11791733	11791852	.	+	.	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
Ledus.S2	AUGUSTUS	stop_codon	11791853	11791855	.	+	0	transcript_id "Ledus.S2G155300.t1"; gene_id "Ledus.S2G155300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg766.t1 is derived from g7627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4875119	4877507	.	+	.	Ledus.S2G064800
Ledus.S2	AUGUSTUS	transcript	4875119	4877507	.	+	.	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	start_codon	4875119	4875121	.	+	0	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	CDS	4875119	4875555	0.92	+	0	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	exon	4875119	4875555	.	+	.	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	intron	4875556	4875733	.	+	.	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	CDS	4875734	4876139	0.84	+	1	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	exon	4875734	4876139	.	+	.	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	intron	4876140	4876243	.	+	.	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	CDS	4876244	4876459	0.86	+	0	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	exon	4876244	4876459	.	+	.	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	intron	4876460	4876558	.	+	.	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	CDS	4876559	4876666	0.97	+	0	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	exon	4876559	4876666	.	+	.	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	intron	4876667	4876808	.	+	.	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	CDS	4876809	4877083	0.93	+	0	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	exon	4876809	4877083	.	+	.	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	intron	4877084	4877185	.	+	.	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	CDS	4877186	4877507	0.88	+	1	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	exon	4877186	4877507	.	+	.	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
Ledus.S2	AUGUSTUS	stop_codon	4877508	4877510	.	+	0	transcript_id "Ledus.S2G064800.t1"; gene_id "Ledus.S2G064800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7653.t1 is derived from g12324.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4822453	4823008	.	-	.	Ledus.S5G043100
Ledus.S5	AUGUSTUS	transcript	4822453	4823008	.	-	.	transcript_id "Ledus.S5G043100.t1"; gene_id "Ledus.S5G043100"
Ledus.S5	AUGUSTUS	stop_codon	4822450	4822452	.	-	0	transcript_id "Ledus.S5G043100.t1"; gene_id "Ledus.S5G043100"
Ledus.S5	AUGUSTUS	CDS	4822453	4822557	0.71	-	0	transcript_id "Ledus.S5G043100.t1"; gene_id "Ledus.S5G043100"
Ledus.S5	AUGUSTUS	exon	4822453	4822557	.	-	.	transcript_id "Ledus.S5G043100.t1"; gene_id "Ledus.S5G043100"
Ledus.S5	AUGUSTUS	intron	4822558	4822648	.	-	.	transcript_id "Ledus.S5G043100.t1"; gene_id "Ledus.S5G043100"
Ledus.S5	AUGUSTUS	CDS	4822649	4823008	0.81	-	0	transcript_id "Ledus.S5G043100.t1"; gene_id "Ledus.S5G043100"
Ledus.S5	AUGUSTUS	exon	4822649	4823008	.	-	.	transcript_id "Ledus.S5G043100.t1"; gene_id "Ledus.S5G043100"
Ledus.S5	AUGUSTUS	start_codon	4823006	4823008	.	-	0	transcript_id "Ledus.S5G043100.t1"; gene_id "Ledus.S5G043100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12697.t1 is derived from g6319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13958359	13959441	.	-	.	Ledus.S4G185300
Ledus.S4	AUGUSTUS	transcript	13958359	13959441	.	-	.	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	stop_codon	13958356	13958358	.	-	0	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	CDS	13958359	13958547	0.97	-	0	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	exon	13958359	13958547	.	-	.	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	intron	13958548	13958615	.	-	.	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	CDS	13958616	13958771	1	-	0	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	exon	13958616	13958771	.	-	.	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	intron	13958772	13958848	.	-	.	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	CDS	13958849	13958961	1	-	2	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	exon	13958849	13958961	.	-	.	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	intron	13958962	13959046	.	-	.	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	CDS	13959047	13959273	1	-	1	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	exon	13959047	13959273	.	-	.	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	intron	13959274	13959376	.	-	.	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	CDS	13959377	13959441	0.97	-	0	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	exon	13959377	13959441	.	-	.	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
Ledus.S4	AUGUSTUS	start_codon	13959439	13959441	.	-	0	transcript_id "Ledus.S4G185300.t1"; gene_id "Ledus.S4G185300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1397.t1 is derived from g8258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9823955	9825589	.	+	.	Ledus.S2G127900
Ledus.S2	AUGUSTUS	transcript	9823955	9825589	.	+	.	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	start_codon	9823955	9823957	.	+	0	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	CDS	9823955	9824060	0.8	+	0	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	exon	9823955	9824060	.	+	.	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	intron	9824061	9824185	.	+	.	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	CDS	9824186	9824463	0.94	+	2	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	exon	9824186	9824463	.	+	.	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	intron	9824464	9824546	.	+	.	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	CDS	9824547	9824845	0.99	+	0	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	exon	9824547	9824845	.	+	.	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	intron	9824846	9824940	.	+	.	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	CDS	9824941	9825589	0.83	+	1	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	exon	9824941	9825589	.	+	.	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
Ledus.S2	AUGUSTUS	stop_codon	9825590	9825592	.	+	0	transcript_id "Ledus.S2G127900.t1"; gene_id "Ledus.S2G127900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4450.t1 is derived from g1886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17163979	17164281	.	-	.	Ledus.S1G187100
Ledus.S1	AUGUSTUS	transcript	17163979	17164281	.	-	.	transcript_id "Ledus.S1G187100.t1"; gene_id "Ledus.S1G187100"
Ledus.S1	AUGUSTUS	stop_codon	17163976	17163978	.	-	0	transcript_id "Ledus.S1G187100.t1"; gene_id "Ledus.S1G187100"
Ledus.S1	AUGUSTUS	CDS	17163979	17164281	0.27	-	0	transcript_id "Ledus.S1G187100.t1"; gene_id "Ledus.S1G187100"
Ledus.S1	AUGUSTUS	exon	17163979	17164281	.	-	.	transcript_id "Ledus.S1G187100.t1"; gene_id "Ledus.S1G187100"
Ledus.S1	AUGUSTUS	start_codon	17164279	17164281	.	-	0	transcript_id "Ledus.S1G187100.t1"; gene_id "Ledus.S1G187100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg652.t1 is derived from g7513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3896162	3898369	.	-	.	Ledus.S2G053400
Ledus.S2	AUGUSTUS	transcript	3896162	3898369	.	-	.	transcript_id "Ledus.S2G053400.t1"; gene_id "Ledus.S2G053400"
Ledus.S2	AUGUSTUS	stop_codon	3896159	3896161	.	-	0	transcript_id "Ledus.S2G053400.t1"; gene_id "Ledus.S2G053400"
Ledus.S2	AUGUSTUS	CDS	3896162	3896965	1	-	0	transcript_id "Ledus.S2G053400.t1"; gene_id "Ledus.S2G053400"
Ledus.S2	AUGUSTUS	exon	3896162	3896965	.	-	.	transcript_id "Ledus.S2G053400.t1"; gene_id "Ledus.S2G053400"
Ledus.S2	AUGUSTUS	intron	3896966	3897113	.	-	.	transcript_id "Ledus.S2G053400.t1"; gene_id "Ledus.S2G053400"
Ledus.S2	AUGUSTUS	CDS	3897114	3897263	1	-	0	transcript_id "Ledus.S2G053400.t1"; gene_id "Ledus.S2G053400"
Ledus.S2	AUGUSTUS	exon	3897114	3897263	.	-	.	transcript_id "Ledus.S2G053400.t1"; gene_id "Ledus.S2G053400"
Ledus.S2	AUGUSTUS	intron	3897264	3897445	.	-	.	transcript_id "Ledus.S2G053400.t1"; gene_id "Ledus.S2G053400"
Ledus.S2	AUGUSTUS	CDS	3897446	3898369	0.96	-	0	transcript_id "Ledus.S2G053400.t1"; gene_id "Ledus.S2G053400"
Ledus.S2	AUGUSTUS	exon	3897446	3898369	.	-	.	transcript_id "Ledus.S2G053400.t1"; gene_id "Ledus.S2G053400"
Ledus.S2	AUGUSTUS	start_codon	3898367	3898369	.	-	0	transcript_id "Ledus.S2G053400.t1"; gene_id "Ledus.S2G053400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12822.t1 is derived from g6444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15060748	15064108	.	+	.	Ledus.S4G197800
Ledus.S4	AUGUSTUS	transcript	15060748	15064108	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	start_codon	15060748	15060750	.	+	0	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	CDS	15060748	15062029	1	+	0	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	exon	15060748	15062029	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	intron	15062030	15062113	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	CDS	15062114	15062196	1	+	2	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	exon	15062114	15062196	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	intron	15062197	15062412	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	CDS	15062413	15062448	0.96	+	0	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	exon	15062413	15062448	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	intron	15062449	15062520	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	CDS	15062521	15062532	0.96	+	0	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	exon	15062521	15062532	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	intron	15062533	15062833	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	CDS	15062834	15062891	0.96	+	0	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	exon	15062834	15062891	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	intron	15062892	15062989	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	CDS	15062990	15063062	0.97	+	2	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	exon	15062990	15063062	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	intron	15063063	15063600	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	CDS	15063601	15064108	0.93	+	1	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	exon	15063601	15064108	.	+	.	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
Ledus.S4	AUGUSTUS	stop_codon	15064109	15064111	.	+	0	transcript_id "Ledus.S4G197800.t1"; gene_id "Ledus.S4G197800"
# This transcript jg11313.t2 is derived from g4931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11313.t3 is derived from g4931.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11314.t1 is derived from g4932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3512890	3513296	.	+	.	Ledus.S4G047000
Ledus.S4	AUGUSTUS	transcript	3512890	3513296	.	+	.	transcript_id "Ledus.S4G047000.t1"; gene_id "Ledus.S4G047000"
Ledus.S4	AUGUSTUS	start_codon	3512890	3512892	.	+	0	transcript_id "Ledus.S4G047000.t1"; gene_id "Ledus.S4G047000"
Ledus.S4	AUGUSTUS	CDS	3512890	3513026	0.23	+	0	transcript_id "Ledus.S4G047000.t1"; gene_id "Ledus.S4G047000"
Ledus.S4	AUGUSTUS	exon	3512890	3513026	.	+	.	transcript_id "Ledus.S4G047000.t1"; gene_id "Ledus.S4G047000"
Ledus.S4	AUGUSTUS	intron	3513027	3513112	.	+	.	transcript_id "Ledus.S4G047000.t1"; gene_id "Ledus.S4G047000"
Ledus.S4	AUGUSTUS	CDS	3513113	3513296	0.58	+	1	transcript_id "Ledus.S4G047000.t1"; gene_id "Ledus.S4G047000"
Ledus.S4	AUGUSTUS	exon	3513113	3513296	.	+	.	transcript_id "Ledus.S4G047000.t1"; gene_id "Ledus.S4G047000"
Ledus.S4	AUGUSTUS	stop_codon	3513297	3513299	.	+	0	transcript_id "Ledus.S4G047000.t1"; gene_id "Ledus.S4G047000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5960.t1 is derived from g3403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28052784	28054708	.	+	.	Ledus.S1G338100
Ledus.S1	AUGUSTUS	transcript	28052784	28054708	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	start_codon	28052784	28052786	.	+	0	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	CDS	28052784	28052803	0.84	+	0	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	exon	28052784	28052803	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	intron	28052804	28053087	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	CDS	28053088	28053295	0.95	+	1	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	exon	28053088	28053295	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	intron	28053296	28053384	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	CDS	28053385	28053489	1	+	0	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	exon	28053385	28053489	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	intron	28053490	28053606	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	CDS	28053607	28053831	1	+	0	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	exon	28053607	28053831	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	intron	28053832	28053924	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	CDS	28053925	28053983	1	+	0	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	exon	28053925	28053983	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	intron	28053984	28054084	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	CDS	28054085	28054436	0.89	+	1	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	exon	28054085	28054436	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	intron	28054437	28054515	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	CDS	28054516	28054578	1	+	0	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	exon	28054516	28054578	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	intron	28054579	28054663	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	CDS	28054664	28054708	1	+	0	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	exon	28054664	28054708	.	+	.	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
Ledus.S1	AUGUSTUS	stop_codon	28054709	28054711	.	+	0	transcript_id "Ledus.S1G338100.t1"; gene_id "Ledus.S1G338100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10178.t1 is derived from g11208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13463435	13465302	.	+	.	Ledus.S3G165500
Ledus.S3	AUGUSTUS	transcript	13463435	13465302	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	start_codon	13463435	13463437	.	+	0	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	CDS	13463435	13463664	0.97	+	0	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	exon	13463435	13463664	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	intron	13463665	13463848	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	CDS	13463849	13463990	1	+	1	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	exon	13463849	13463990	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	intron	13463991	13464173	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	CDS	13464174	13464252	1	+	0	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	exon	13464174	13464252	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	intron	13464253	13464380	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	CDS	13464381	13464505	1	+	2	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	exon	13464381	13464505	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	intron	13464506	13464605	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	CDS	13464606	13464707	1	+	0	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	exon	13464606	13464707	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	intron	13464708	13464818	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	CDS	13464819	13464887	0.98	+	0	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	exon	13464819	13464887	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	intron	13464888	13464991	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	CDS	13464992	13465090	0.97	+	0	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	exon	13464992	13465090	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	intron	13465091	13465173	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	CDS	13465174	13465302	0.84	+	0	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	exon	13465174	13465302	.	+	.	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
Ledus.S3	AUGUSTUS	stop_codon	13465303	13465305	.	+	0	transcript_id "Ledus.S3G165500.t1"; gene_id "Ledus.S3G165500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12340.t1 is derived from g5961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11312047	11320564	.	+	.	Ledus.S4G149600
Ledus.S4	AUGUSTUS	transcript	11312047	11320564	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	start_codon	11312047	11312049	.	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11312047	11312258	0.82	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11312047	11312258	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11312259	11312339	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11312340	11312568	1	+	1	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11312340	11312568	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11312569	11312643	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11312644	11312716	1	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11312644	11312716	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11312717	11312796	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11312797	11313036	1	+	2	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11312797	11313036	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11313037	11313136	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11313137	11313207	0.99	+	2	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11313137	11313207	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11313208	11313324	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11313325	11313456	1	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11313325	11313456	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11313457	11313548	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11313549	11313590	1	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11313549	11313590	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11313591	11313778	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11313779	11314264	1	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11313779	11314264	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11314265	11314333	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11314334	11314491	1	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11314334	11314491	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11314492	11314586	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11314587	11314998	1	+	1	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11314587	11314998	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11314999	11315071	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11315072	11315134	1	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11315072	11315134	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11315135	11315218	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11315219	11315320	1	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11315219	11315320	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11315321	11315393	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11315394	11315705	1	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11315394	11315705	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11315706	11315785	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11315786	11315878	0.98	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11315786	11315878	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11315879	11315975	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11315976	11316077	0.98	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11315976	11316077	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11316078	11316175	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11316176	11316280	1	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11316176	11316280	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11316281	11316374	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11316375	11316508	0.81	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11316375	11316508	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11316509	11316593	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11316594	11316777	0.99	+	1	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11316594	11316777	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11316778	11317102	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11317103	11317234	1	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11317103	11317234	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11317235	11317354	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11317355	11317467	1	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11317355	11317467	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11317468	11317616	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11317617	11317701	1	+	1	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11317617	11317701	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	intron	11317702	11317804	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	CDS	11317805	11320564	0.93	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	exon	11317805	11320564	.	+	.	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
Ledus.S4	AUGUSTUS	stop_codon	11320565	11320567	.	+	0	transcript_id "Ledus.S4G149600.t1"; gene_id "Ledus.S4G149600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg670.t1 is derived from g7531.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4002038	4003195	.	+	.	Ledus.S2G055200
Ledus.S2	AUGUSTUS	transcript	4002038	4002915	.	+	.	transcript_id "Ledus.S2G055200.t1"; gene_id "Ledus.S2G055200"
Ledus.S2	AUGUSTUS	start_codon	4002038	4002040	.	+	0	transcript_id "Ledus.S2G055200.t1"; gene_id "Ledus.S2G055200"
Ledus.S2	AUGUSTUS	CDS	4002038	4002783	0.77	+	0	transcript_id "Ledus.S2G055200.t1"; gene_id "Ledus.S2G055200"
Ledus.S2	AUGUSTUS	exon	4002038	4002783	.	+	.	transcript_id "Ledus.S2G055200.t1"; gene_id "Ledus.S2G055200"
Ledus.S2	AUGUSTUS	intron	4002784	4002848	.	+	.	transcript_id "Ledus.S2G055200.t1"; gene_id "Ledus.S2G055200"
Ledus.S2	AUGUSTUS	CDS	4002849	4002915	0.94	+	1	transcript_id "Ledus.S2G055200.t1"; gene_id "Ledus.S2G055200"
Ledus.S2	AUGUSTUS	exon	4002849	4002915	.	+	.	transcript_id "Ledus.S2G055200.t1"; gene_id "Ledus.S2G055200"
Ledus.S2	AUGUSTUS	stop_codon	4002916	4002918	.	+	0	transcript_id "Ledus.S2G055200.t1"; gene_id "Ledus.S2G055200"
Ledus.S2	AUGUSTUS	transcript	4002038	4003195	.	+	.	transcript_id "Ledus.S2G055200.t2"; gene_id "Ledus.S2G055200"
Ledus.S2	AUGUSTUS	start_codon	4002038	4002040	.	+	0	transcript_id "Ledus.S2G055200.t2"; gene_id "Ledus.S2G055200"
Ledus.S2	AUGUSTUS	CDS	4002038	4003195	0.97	+	0	transcript_id "Ledus.S2G055200.t2"; gene_id "Ledus.S2G055200"
Ledus.S2	AUGUSTUS	exon	4002038	4003195	.	+	.	transcript_id "Ledus.S2G055200.t2"; gene_id "Ledus.S2G055200"
Ledus.S2	AUGUSTUS	stop_codon	4003196	4003198	.	+	0	transcript_id "Ledus.S2G055200.t2"; gene_id "Ledus.S2G055200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2961.t1 is derived from g396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4921775	4922784	.	+	.	Ledus.S1G038200
Ledus.S1	AUGUSTUS	transcript	4921775	4922784	.	+	.	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	start_codon	4921775	4921777	.	+	0	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	CDS	4921775	4922140	0.97	+	0	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	exon	4921775	4922140	.	+	.	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	intron	4922141	4922245	.	+	.	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	CDS	4922246	4922317	1	+	0	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	exon	4922246	4922317	.	+	.	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	intron	4922318	4922392	.	+	.	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	CDS	4922393	4922488	1	+	0	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	exon	4922393	4922488	.	+	.	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	intron	4922489	4922577	.	+	.	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	CDS	4922578	4922784	0.98	+	0	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	exon	4922578	4922784	.	+	.	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
Ledus.S1	AUGUSTUS	stop_codon	4922785	4922787	.	+	0	transcript_id "Ledus.S1G038200.t1"; gene_id "Ledus.S1G038200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10930.t1 is derived from g4548.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	646610	648928	.	+	.	Ledus.S4G008600
Ledus.S4	AUGUSTUS	transcript	646610	648928	.	+	.	transcript_id "Ledus.S4G008600.t1"; gene_id "Ledus.S4G008600"
Ledus.S4	AUGUSTUS	start_codon	646610	646612	.	+	0	transcript_id "Ledus.S4G008600.t1"; gene_id "Ledus.S4G008600"
Ledus.S4	AUGUSTUS	CDS	646610	648928	1	+	0	transcript_id "Ledus.S4G008600.t1"; gene_id "Ledus.S4G008600"
Ledus.S4	AUGUSTUS	exon	646610	648928	.	+	.	transcript_id "Ledus.S4G008600.t1"; gene_id "Ledus.S4G008600"
Ledus.S4	AUGUSTUS	stop_codon	648929	648931	.	+	0	transcript_id "Ledus.S4G008600.t1"; gene_id "Ledus.S4G008600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13102.t1 is derived from g6912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5630765	5631187	.	+	.	Ledus.S6G016400
Ledus.S6	AUGUSTUS	transcript	5630765	5631187	.	+	.	transcript_id "Ledus.S6G016400.t1"; gene_id "Ledus.S6G016400"
Ledus.S6	AUGUSTUS	start_codon	5630765	5630767	.	+	0	transcript_id "Ledus.S6G016400.t1"; gene_id "Ledus.S6G016400"
Ledus.S6	AUGUSTUS	CDS	5630765	5631187	0.56	+	0	transcript_id "Ledus.S6G016400.t1"; gene_id "Ledus.S6G016400"
Ledus.S6	AUGUSTUS	exon	5630765	5631187	.	+	.	transcript_id "Ledus.S6G016400.t1"; gene_id "Ledus.S6G016400"
Ledus.S6	AUGUSTUS	stop_codon	5631188	5631190	.	+	0	transcript_id "Ledus.S6G016400.t1"; gene_id "Ledus.S6G016400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7505.t1 is derived from g12176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3500343	3500807	.	-	.	Ledus.S5G028300
Ledus.S5	AUGUSTUS	transcript	3500343	3500807	.	-	.	transcript_id "Ledus.S5G028300.t1"; gene_id "Ledus.S5G028300"
Ledus.S5	AUGUSTUS	stop_codon	3500340	3500342	.	-	0	transcript_id "Ledus.S5G028300.t1"; gene_id "Ledus.S5G028300"
Ledus.S5	AUGUSTUS	CDS	3500343	3500807	0.52	-	0	transcript_id "Ledus.S5G028300.t1"; gene_id "Ledus.S5G028300"
Ledus.S5	AUGUSTUS	exon	3500343	3500807	.	-	.	transcript_id "Ledus.S5G028300.t1"; gene_id "Ledus.S5G028300"
Ledus.S5	AUGUSTUS	start_codon	3500805	3500807	.	-	0	transcript_id "Ledus.S5G028300.t1"; gene_id "Ledus.S5G028300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9527.t1 is derived from g10557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7592275	7592945	.	-	.	Ledus.S3G100400
Ledus.S3	AUGUSTUS	transcript	7592275	7592945	.	-	.	transcript_id "Ledus.S3G100400.t1"; gene_id "Ledus.S3G100400"
Ledus.S3	AUGUSTUS	stop_codon	7592272	7592274	.	-	0	transcript_id "Ledus.S3G100400.t1"; gene_id "Ledus.S3G100400"
Ledus.S3	AUGUSTUS	CDS	7592275	7592278	0.97	-	1	transcript_id "Ledus.S3G100400.t1"; gene_id "Ledus.S3G100400"
Ledus.S3	AUGUSTUS	exon	7592275	7592278	.	-	.	transcript_id "Ledus.S3G100400.t1"; gene_id "Ledus.S3G100400"
Ledus.S3	AUGUSTUS	intron	7592279	7592426	.	-	.	transcript_id "Ledus.S3G100400.t1"; gene_id "Ledus.S3G100400"
Ledus.S3	AUGUSTUS	CDS	7592427	7592528	0.46	-	1	transcript_id "Ledus.S3G100400.t1"; gene_id "Ledus.S3G100400"
Ledus.S3	AUGUSTUS	exon	7592427	7592528	.	-	.	transcript_id "Ledus.S3G100400.t1"; gene_id "Ledus.S3G100400"
Ledus.S3	AUGUSTUS	intron	7592529	7592748	.	-	.	transcript_id "Ledus.S3G100400.t1"; gene_id "Ledus.S3G100400"
Ledus.S3	AUGUSTUS	CDS	7592749	7592945	0.42	-	0	transcript_id "Ledus.S3G100400.t1"; gene_id "Ledus.S3G100400"
Ledus.S3	AUGUSTUS	exon	7592749	7592945	.	-	.	transcript_id "Ledus.S3G100400.t1"; gene_id "Ledus.S3G100400"
Ledus.S3	AUGUSTUS	start_codon	7592943	7592945	.	-	0	transcript_id "Ledus.S3G100400.t1"; gene_id "Ledus.S3G100400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8491.t1 is derived from g13163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12187155	12188112	.	-	.	Ledus.S5G126900
Ledus.S5	AUGUSTUS	transcript	12187155	12188112	.	-	.	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	stop_codon	12187152	12187154	.	-	0	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	CDS	12187155	12187279	1	-	2	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	exon	12187155	12187279	.	-	.	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	intron	12187280	12187372	.	-	.	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	CDS	12187373	12187448	1	-	0	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	exon	12187373	12187448	.	-	.	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	intron	12187449	12187547	.	-	.	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	CDS	12187548	12187636	1	-	2	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	exon	12187548	12187636	.	-	.	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	intron	12187637	12187713	.	-	.	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	CDS	12187714	12187767	1	-	2	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	exon	12187714	12187767	.	-	.	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	intron	12187768	12187845	.	-	.	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	CDS	12187846	12187982	1	-	1	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	exon	12187846	12187982	.	-	.	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	intron	12187983	12188053	.	-	.	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	CDS	12188054	12188112	1	-	0	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	exon	12188054	12188112	.	-	.	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
Ledus.S5	AUGUSTUS	start_codon	12188110	12188112	.	-	0	transcript_id "Ledus.S5G126900.t1"; gene_id "Ledus.S5G126900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1030.t1 is derived from g7891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6875781	6876725	.	+	.	Ledus.S2G091200
Ledus.S2	AUGUSTUS	transcript	6875781	6876725	.	+	.	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	start_codon	6875781	6875783	.	+	0	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	CDS	6875781	6875845	0.65	+	0	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	exon	6875781	6875845	.	+	.	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	intron	6875846	6875927	.	+	.	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	CDS	6875928	6876079	0.89	+	1	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	exon	6875928	6876079	.	+	.	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	intron	6876080	6876173	.	+	.	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	CDS	6876174	6876355	1	+	2	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	exon	6876174	6876355	.	+	.	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	intron	6876356	6876442	.	+	.	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	CDS	6876443	6876564	1	+	0	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	exon	6876443	6876564	.	+	.	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	intron	6876565	6876703	.	+	.	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	CDS	6876704	6876725	1	+	1	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	exon	6876704	6876725	.	+	.	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
Ledus.S2	AUGUSTUS	stop_codon	6876726	6876728	.	+	0	transcript_id "Ledus.S2G091200.t1"; gene_id "Ledus.S2G091200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12609.t1 is derived from g6231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13221517	13222833	.	+	.	Ledus.S4G176500
Ledus.S4	AUGUSTUS	transcript	13221517	13222833	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	start_codon	13221517	13221519	.	+	0	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	CDS	13221517	13221583	0.92	+	0	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	exon	13221517	13221583	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	intron	13221584	13221655	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	CDS	13221656	13221915	1	+	2	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	exon	13221656	13221915	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	intron	13221916	13221997	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	CDS	13221998	13222116	1	+	0	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	exon	13221998	13222116	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	intron	13222117	13222204	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	CDS	13222205	13222316	1	+	1	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	exon	13222205	13222316	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	intron	13222317	13222386	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	CDS	13222387	13222539	0.78	+	0	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	exon	13222387	13222539	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	intron	13222540	13222628	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	CDS	13222629	13222679	0.91	+	0	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	exon	13222629	13222679	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	intron	13222680	13222752	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	CDS	13222753	13222833	0.91	+	0	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	exon	13222753	13222833	.	+	.	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
Ledus.S4	AUGUSTUS	stop_codon	13222834	13222836	.	+	0	transcript_id "Ledus.S4G176500.t1"; gene_id "Ledus.S4G176500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1181.t1 is derived from g8042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8272448	8274059	.	+	.	Ledus.S2G106300
Ledus.S2	AUGUSTUS	transcript	8272448	8274059	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	start_codon	8272448	8272450	.	+	0	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	CDS	8272448	8272742	0.97	+	0	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	exon	8272448	8272742	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	intron	8272743	8272941	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	CDS	8272942	8272977	0.96	+	2	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	exon	8272942	8272977	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	intron	8272978	8273030	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	CDS	8273031	8273088	0.96	+	2	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	exon	8273031	8273088	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	intron	8273089	8273184	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	CDS	8273185	8273292	1	+	1	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	exon	8273185	8273292	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	intron	8273293	8273377	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	CDS	8273378	8273461	1	+	1	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	exon	8273378	8273461	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	intron	8273462	8273589	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	CDS	8273590	8273700	0.41	+	1	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	exon	8273590	8273700	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	intron	8273701	8273776	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	CDS	8273777	8274059	0.65	+	1	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	exon	8273777	8274059	.	+	.	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
Ledus.S2	AUGUSTUS	stop_codon	8274060	8274062	.	+	0	transcript_id "Ledus.S2G106300.t1"; gene_id "Ledus.S2G106300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12046.t1 is derived from g5665.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9172950	9174947	.	+	.	Ledus.S4G120200
Ledus.S4	AUGUSTUS	transcript	9172950	9174947	.	+	.	transcript_id "Ledus.S4G120200.t1"; gene_id "Ledus.S4G120200"
Ledus.S4	AUGUSTUS	start_codon	9172950	9172952	.	+	0	transcript_id "Ledus.S4G120200.t1"; gene_id "Ledus.S4G120200"
Ledus.S4	AUGUSTUS	CDS	9172950	9174947	0.39	+	0	transcript_id "Ledus.S4G120200.t1"; gene_id "Ledus.S4G120200"
Ledus.S4	AUGUSTUS	exon	9172950	9174947	.	+	.	transcript_id "Ledus.S4G120200.t1"; gene_id "Ledus.S4G120200"
Ledus.S4	AUGUSTUS	stop_codon	9174948	9174950	.	+	0	transcript_id "Ledus.S4G120200.t1"; gene_id "Ledus.S4G120200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4098.t1 is derived from g1534.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14675384	14676688	.	+	.	Ledus.S1G151900
Ledus.S1	AUGUSTUS	transcript	14675384	14676688	.	+	.	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	start_codon	14675384	14675386	.	+	0	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	CDS	14675384	14675630	0.62	+	0	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	exon	14675384	14675630	.	+	.	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	intron	14675631	14675726	.	+	.	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	CDS	14675727	14675848	1	+	2	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	exon	14675727	14675848	.	+	.	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	intron	14675849	14675996	.	+	.	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	CDS	14675997	14676236	1	+	0	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	exon	14675997	14676236	.	+	.	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	intron	14676237	14676325	.	+	.	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	CDS	14676326	14676399	0.82	+	0	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	exon	14676326	14676399	.	+	.	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	intron	14676400	14676672	.	+	.	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	CDS	14676673	14676688	0.59	+	1	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	exon	14676673	14676688	.	+	.	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
Ledus.S1	AUGUSTUS	stop_codon	14676689	14676691	.	+	0	transcript_id "Ledus.S1G151900.t1"; gene_id "Ledus.S1G151900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10002.t1 is derived from g11032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11803699	11806707	.	-	.	Ledus.S3G147900
Ledus.S3	AUGUSTUS	transcript	11803699	11806707	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	stop_codon	11803696	11803698	.	-	0	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	CDS	11803699	11804348	0.5	-	2	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	exon	11803699	11804348	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	intron	11804349	11804458	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	CDS	11804459	11804815	0.91	-	2	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	exon	11804459	11804815	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	intron	11804816	11804926	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	CDS	11804927	11805260	0.84	-	0	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	exon	11804927	11805260	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	intron	11805261	11805340	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	CDS	11805341	11805568	0.99	-	0	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	exon	11805341	11805568	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	intron	11805569	11805677	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	CDS	11805678	11805962	1	-	0	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	exon	11805678	11805962	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	intron	11805963	11806176	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	CDS	11806177	11806476	0.69	-	0	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	exon	11806177	11806476	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	intron	11806477	11806548	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	CDS	11806549	11806707	0.33	-	0	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	exon	11806549	11806707	.	-	.	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
Ledus.S3	AUGUSTUS	start_codon	11806705	11806707	.	-	0	transcript_id "Ledus.S3G147900.t1"; gene_id "Ledus.S3G147900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3582.t1 is derived from g1018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9778188	9780250	.	-	.	Ledus.S1G100300
Ledus.S1	AUGUSTUS	transcript	9778188	9780250	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	stop_codon	9778185	9778187	.	-	0	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	CDS	9778188	9778213	0.89	-	2	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	exon	9778188	9778213	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	intron	9778214	9778370	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	CDS	9778371	9778458	0.49	-	0	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	exon	9778371	9778458	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	intron	9778459	9778590	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	CDS	9778591	9778661	0.33	-	2	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	exon	9778591	9778661	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	intron	9778662	9778924	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	CDS	9778925	9779030	0.4	-	0	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	exon	9778925	9779030	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	intron	9779031	9779146	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	CDS	9779147	9779392	0.97	-	0	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	exon	9779147	9779392	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	intron	9779393	9779527	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	CDS	9779528	9779661	1	-	2	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	exon	9779528	9779661	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	intron	9779662	9779747	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	CDS	9779748	9779931	1	-	0	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	exon	9779748	9779931	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	intron	9779932	9780112	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	CDS	9780113	9780250	0.73	-	0	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	exon	9780113	9780250	.	-	.	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
Ledus.S1	AUGUSTUS	start_codon	9780248	9780250	.	-	0	transcript_id "Ledus.S1G100300.t1"; gene_id "Ledus.S1G100300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8940.t1 is derived from g9970.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3330798	3331670	.	+	.	Ledus.S3G041700
Ledus.S3	AUGUSTUS	transcript	3330798	3331670	.	+	.	transcript_id "Ledus.S3G041700.t1"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	start_codon	3330798	3330800	.	+	0	transcript_id "Ledus.S3G041700.t1"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	CDS	3330798	3330920	0.99	+	0	transcript_id "Ledus.S3G041700.t1"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	exon	3330798	3330920	.	+	.	transcript_id "Ledus.S3G041700.t1"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	intron	3330921	3331163	.	+	.	transcript_id "Ledus.S3G041700.t1"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	CDS	3331164	3331252	0.99	+	0	transcript_id "Ledus.S3G041700.t1"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	exon	3331164	3331252	.	+	.	transcript_id "Ledus.S3G041700.t1"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	intron	3331253	3331657	.	+	.	transcript_id "Ledus.S3G041700.t1"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	CDS	3331658	3331670	1	+	1	transcript_id "Ledus.S3G041700.t1"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	exon	3331658	3331670	.	+	.	transcript_id "Ledus.S3G041700.t1"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	stop_codon	3331671	3331673	.	+	0	transcript_id "Ledus.S3G041700.t1"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	transcript	3330887	3331670	.	+	.	transcript_id "Ledus.S3G041700.t2"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	start_codon	3330887	3330889	.	+	0	transcript_id "Ledus.S3G041700.t2"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	CDS	3330887	3330920	0.97	+	0	transcript_id "Ledus.S3G041700.t2"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	exon	3330887	3330920	.	+	.	transcript_id "Ledus.S3G041700.t2"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	intron	3330921	3331062	.	+	.	transcript_id "Ledus.S3G041700.t2"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	CDS	3331063	3331252	0.98	+	2	transcript_id "Ledus.S3G041700.t2"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	exon	3331063	3331252	.	+	.	transcript_id "Ledus.S3G041700.t2"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	intron	3331253	3331657	.	+	.	transcript_id "Ledus.S3G041700.t2"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	CDS	3331658	3331670	0.98	+	1	transcript_id "Ledus.S3G041700.t2"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	exon	3331658	3331670	.	+	.	transcript_id "Ledus.S3G041700.t2"; gene_id "Ledus.S3G041700"
Ledus.S3	AUGUSTUS	stop_codon	3331671	3331673	.	+	0	transcript_id "Ledus.S3G041700.t2"; gene_id "Ledus.S3G041700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1804.t1 is derived from g8667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12689544	12689884	.	-	.	Ledus.S2G168600
Ledus.S2	AUGUSTUS	transcript	12689544	12689884	.	-	.	transcript_id "Ledus.S2G168600.t1"; gene_id "Ledus.S2G168600"
Ledus.S2	AUGUSTUS	stop_codon	12689541	12689543	.	-	0	transcript_id "Ledus.S2G168600.t1"; gene_id "Ledus.S2G168600"
Ledus.S2	AUGUSTUS	CDS	12689544	12689670	0.55	-	1	transcript_id "Ledus.S2G168600.t1"; gene_id "Ledus.S2G168600"
Ledus.S2	AUGUSTUS	exon	12689544	12689670	.	-	.	transcript_id "Ledus.S2G168600.t1"; gene_id "Ledus.S2G168600"
Ledus.S2	AUGUSTUS	intron	12689671	12689765	.	-	.	transcript_id "Ledus.S2G168600.t1"; gene_id "Ledus.S2G168600"
Ledus.S2	AUGUSTUS	CDS	12689766	12689884	0.55	-	0	transcript_id "Ledus.S2G168600.t1"; gene_id "Ledus.S2G168600"
Ledus.S2	AUGUSTUS	exon	12689766	12689884	.	-	.	transcript_id "Ledus.S2G168600.t1"; gene_id "Ledus.S2G168600"
Ledus.S2	AUGUSTUS	start_codon	12689882	12689884	.	-	0	transcript_id "Ledus.S2G168600.t1"; gene_id "Ledus.S2G168600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5179.t1 is derived from g2618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22171170	22175437	.	-	.	Ledus.S1G260000
Ledus.S1	AUGUSTUS	transcript	22171170	22175437	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	stop_codon	22171167	22171169	.	-	0	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22171170	22171258	0.52	-	2	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22171170	22171258	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22171259	22171377	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22171378	22171506	0.5	-	2	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22171378	22171506	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22171507	22171594	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22171595	22171730	0.48	-	0	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22171595	22171730	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22171731	22171800	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22171801	22171950	0.4	-	0	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22171801	22171950	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22171951	22172042	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22172043	22172177	1	-	0	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22172043	22172177	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22172178	22172368	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22172369	22172452	1	-	0	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22172369	22172452	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22172453	22172567	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22172568	22172726	1	-	0	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22172568	22172726	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22172727	22172816	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22172817	22172900	1	-	0	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22172817	22172900	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22172901	22172990	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22172991	22173302	0.83	-	0	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22172991	22173302	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22173303	22173412	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22173413	22173510	0.41	-	2	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22173413	22173510	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22173511	22173609	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22173610	22173800	0.75	-	1	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22173610	22173800	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22173801	22173912	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22173913	22174180	1	-	2	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22173913	22174180	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22174181	22174264	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22174265	22174442	1	-	0	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22174265	22174442	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22174443	22174541	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22174542	22174698	0.99	-	1	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22174542	22174698	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22174699	22174812	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22174813	22174900	1	-	2	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22174813	22174900	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22174901	22174987	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22174988	22175185	0.99	-	2	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22174988	22175185	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	intron	22175186	22175382	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	CDS	22175383	22175437	1	-	0	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	exon	22175383	22175437	.	-	.	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
Ledus.S1	AUGUSTUS	start_codon	22175435	22175437	.	-	0	transcript_id "Ledus.S1G260000.t1"; gene_id "Ledus.S1G260000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2777.t1 is derived from g211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3442095	3443926	.	-	.	Ledus.S1G019800
Ledus.S1	AUGUSTUS	transcript	3442095	3443926	.	-	.	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	stop_codon	3442092	3442094	.	-	0	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	CDS	3442095	3442346	1	-	0	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	exon	3442095	3442346	.	-	.	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	intron	3442347	3442438	.	-	.	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	CDS	3442439	3442453	1	-	0	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	exon	3442439	3442453	.	-	.	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	intron	3442454	3442579	.	-	.	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	CDS	3442580	3442810	0.98	-	0	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	exon	3442580	3442810	.	-	.	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	intron	3442811	3442904	.	-	.	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	CDS	3442905	3443210	0.96	-	0	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	exon	3442905	3443210	.	-	.	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	intron	3443211	3443299	.	-	.	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	CDS	3443300	3443926	0.42	-	0	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	exon	3443300	3443926	.	-	.	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
Ledus.S1	AUGUSTUS	start_codon	3443924	3443926	.	-	0	transcript_id "Ledus.S1G019800.t1"; gene_id "Ledus.S1G019800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7867.t1 is derived from g12538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7534937	7539546	.	+	.	Ledus.S5G064500
Ledus.S5	AUGUSTUS	transcript	7534937	7539546	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	start_codon	7534937	7534939	.	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7534937	7535146	0.97	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7534937	7535146	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7535147	7535367	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7535368	7535442	1	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7535368	7535442	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7535443	7535556	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7535557	7535601	1	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7535557	7535601	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7535602	7535735	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7535736	7535828	1	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7535736	7535828	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7535829	7535944	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7535945	7535997	1	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7535945	7535997	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7535998	7536110	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7536111	7536162	1	+	1	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7536111	7536162	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7536163	7536257	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7536258	7536326	1	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7536258	7536326	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7536327	7536413	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7536414	7536482	0.37	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7536414	7536482	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7536483	7536593	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7536594	7536716	0.36	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7536594	7536716	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7536717	7536835	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7536836	7536888	1	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7536836	7536888	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7536889	7537052	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7537053	7537131	1	+	1	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7537053	7537131	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7537132	7537311	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7537312	7537376	1	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7537312	7537376	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7537377	7537464	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7537465	7537532	1	+	1	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7537465	7537532	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7537533	7537629	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7537630	7537748	1	+	2	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7537630	7537748	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7537749	7537857	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7537858	7537932	1	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7537858	7537932	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7537933	7538172	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7538173	7538288	1	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7538173	7538288	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7538289	7538379	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7538380	7538521	1	+	1	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7538380	7538521	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7538522	7538635	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7538636	7538717	1	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7538636	7538717	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7538718	7538845	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7538846	7538892	1	+	2	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7538846	7538892	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7538893	7539055	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7539056	7539133	1	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7539056	7539133	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7539134	7539213	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7539214	7539319	1	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7539214	7539319	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	intron	7539320	7539481	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	CDS	7539482	7539546	1	+	2	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	exon	7539482	7539546	.	+	.	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
Ledus.S5	AUGUSTUS	stop_codon	7539547	7539549	.	+	0	transcript_id "Ledus.S5G064500.t1"; gene_id "Ledus.S5G064500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2623.t1 is derived from g56.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	625884	626620	.	+	.	Ledus.S1G004400
Ledus.S1	AUGUSTUS	transcript	625884	626620	.	+	.	transcript_id "Ledus.S1G004400.t1"; gene_id "Ledus.S1G004400"
Ledus.S1	AUGUSTUS	start_codon	625884	625886	.	+	0	transcript_id "Ledus.S1G004400.t1"; gene_id "Ledus.S1G004400"
Ledus.S1	AUGUSTUS	CDS	625884	626183	0.41	+	0	transcript_id "Ledus.S1G004400.t1"; gene_id "Ledus.S1G004400"
Ledus.S1	AUGUSTUS	exon	625884	626183	.	+	.	transcript_id "Ledus.S1G004400.t1"; gene_id "Ledus.S1G004400"
Ledus.S1	AUGUSTUS	intron	626184	626276	.	+	.	transcript_id "Ledus.S1G004400.t1"; gene_id "Ledus.S1G004400"
Ledus.S1	AUGUSTUS	CDS	626277	626425	0.47	+	0	transcript_id "Ledus.S1G004400.t1"; gene_id "Ledus.S1G004400"
Ledus.S1	AUGUSTUS	exon	626277	626425	.	+	.	transcript_id "Ledus.S1G004400.t1"; gene_id "Ledus.S1G004400"
Ledus.S1	AUGUSTUS	intron	626426	626532	.	+	.	transcript_id "Ledus.S1G004400.t1"; gene_id "Ledus.S1G004400"
Ledus.S1	AUGUSTUS	CDS	626533	626620	0.76	+	1	transcript_id "Ledus.S1G004400.t1"; gene_id "Ledus.S1G004400"
Ledus.S1	AUGUSTUS	exon	626533	626620	.	+	.	transcript_id "Ledus.S1G004400.t1"; gene_id "Ledus.S1G004400"
Ledus.S1	AUGUSTUS	stop_codon	626621	626623	.	+	0	transcript_id "Ledus.S1G004400.t1"; gene_id "Ledus.S1G004400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg707.t1 is derived from g7568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4337451	4338909	.	-	.	Ledus.S2G058900
Ledus.S2	AUGUSTUS	transcript	4337451	4338909	.	-	.	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	stop_codon	4337448	4337450	.	-	0	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	CDS	4337451	4337783	0.88	-	0	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	exon	4337451	4337783	.	-	.	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	intron	4337784	4337863	.	-	.	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	CDS	4337864	4338073	1	-	0	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	exon	4337864	4338073	.	-	.	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	intron	4338074	4338158	.	-	.	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	CDS	4338159	4338305	1	-	0	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	exon	4338159	4338305	.	-	.	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	intron	4338306	4338377	.	-	.	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	CDS	4338378	4338701	1	-	0	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	exon	4338378	4338701	.	-	.	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	intron	4338702	4338774	.	-	.	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	CDS	4338775	4338909	1	-	0	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	exon	4338775	4338909	.	-	.	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
Ledus.S2	AUGUSTUS	start_codon	4338907	4338909	.	-	0	transcript_id "Ledus.S2G058900.t1"; gene_id "Ledus.S2G058900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2359.t1 is derived from g9222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17464024	17466933	.	-	.	Ledus.S2G224100
Ledus.S2	AUGUSTUS	transcript	17465637	17466933	.	-	.	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	stop_codon	17465634	17465636	.	-	0	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17465637	17465645	1	-	0	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17465637	17465645	.	-	.	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	intron	17465646	17465957	.	-	.	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17465958	17466144	0.78	-	1	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17465958	17466144	.	-	.	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	intron	17466145	17466253	.	-	.	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17466254	17466540	0.98	-	0	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17466254	17466540	.	-	.	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	intron	17466541	17466624	.	-	.	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17466625	17466933	0.98	-	0	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17466625	17466933	.	-	.	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	start_codon	17466931	17466933	.	-	0	transcript_id "Ledus.S2G224100.t1"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	transcript	17464024	17466933	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	stop_codon	17464021	17464023	.	-	0	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17464024	17464054	0.98	-	1	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17464024	17464054	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	intron	17464055	17464285	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17464286	17464309	0.98	-	1	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17464286	17464309	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	intron	17464310	17464447	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17464448	17464529	0.24	-	2	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17464448	17464529	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	intron	17464530	17464614	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17464615	17464842	0.69	-	2	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17464615	17464842	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	intron	17464843	17464964	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17464965	17465074	1	-	1	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17464965	17465074	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	intron	17465075	17465166	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17465167	17465381	1	-	0	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17465167	17465381	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	intron	17465382	17465535	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17465536	17465604	1	-	0	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17465536	17465604	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	intron	17465605	17465957	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17465958	17466144	0.81	-	1	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17465958	17466144	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	intron	17466145	17466253	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17466254	17466540	0.99	-	0	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17466254	17466540	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	intron	17466541	17466624	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	CDS	17466625	17466933	0.93	-	0	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	exon	17466625	17466933	.	-	.	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
Ledus.S2	AUGUSTUS	start_codon	17466931	17466933	.	-	0	transcript_id "Ledus.S2G224100.t2"; gene_id "Ledus.S2G224100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13000.t1 is derived from g6810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2268247	2268462	.	+	.	Ledus.S6G006200
Ledus.S6	AUGUSTUS	transcript	2268247	2268462	.	+	.	transcript_id "Ledus.S6G006200.t1"; gene_id "Ledus.S6G006200"
Ledus.S6	AUGUSTUS	start_codon	2268247	2268249	.	+	0	transcript_id "Ledus.S6G006200.t1"; gene_id "Ledus.S6G006200"
Ledus.S6	AUGUSTUS	CDS	2268247	2268462	0.56	+	0	transcript_id "Ledus.S6G006200.t1"; gene_id "Ledus.S6G006200"
Ledus.S6	AUGUSTUS	exon	2268247	2268462	.	+	.	transcript_id "Ledus.S6G006200.t1"; gene_id "Ledus.S6G006200"
Ledus.S6	AUGUSTUS	stop_codon	2268463	2268465	.	+	0	transcript_id "Ledus.S6G006200.t1"; gene_id "Ledus.S6G006200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11302.t1 is derived from g4920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3471795	3473663	.	-	.	Ledus.S4G045800
Ledus.S4	AUGUSTUS	transcript	3471795	3473663	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	stop_codon	3471792	3471794	.	-	0	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	CDS	3471795	3472028	0.99	-	0	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	exon	3471795	3472028	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	intron	3472029	3472138	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	CDS	3472139	3472210	0.99	-	0	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	exon	3472139	3472210	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	intron	3472211	3472298	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	CDS	3472299	3472394	0.48	-	0	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	exon	3472299	3472394	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	intron	3472395	3472483	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	CDS	3472484	3472537	0.94	-	0	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	exon	3472484	3472537	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	intron	3472538	3472785	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	CDS	3472786	3472884	1	-	0	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	exon	3472786	3472884	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	intron	3472885	3473041	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	CDS	3473042	3473115	1	-	2	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	exon	3473042	3473115	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	intron	3473116	3473203	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	CDS	3473204	3473324	1	-	0	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	exon	3473204	3473324	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	intron	3473325	3473459	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	CDS	3473460	3473663	1	-	0	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	exon	3473460	3473663	.	-	.	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
Ledus.S4	AUGUSTUS	start_codon	3473661	3473663	.	-	0	transcript_id "Ledus.S4G045800.t1"; gene_id "Ledus.S4G045800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11501.t1 is derived from g5119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4948044	4950478	.	-	.	Ledus.S4G065700
Ledus.S4	AUGUSTUS	transcript	4948044	4950478	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	stop_codon	4948041	4948043	.	-	0	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	CDS	4948044	4948185	1	-	1	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	exon	4948044	4948185	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	intron	4948186	4948318	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	CDS	4948319	4948459	1	-	1	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	exon	4948319	4948459	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	intron	4948460	4948608	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	CDS	4948609	4948811	1	-	0	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	exon	4948609	4948811	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	intron	4948812	4949034	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	CDS	4949035	4949149	1	-	1	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	exon	4949035	4949149	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	intron	4949150	4949253	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	CDS	4949254	4949420	1	-	0	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	exon	4949254	4949420	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	intron	4949421	4949574	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	CDS	4949575	4949635	1	-	1	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	exon	4949575	4949635	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	intron	4949636	4949736	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	CDS	4949737	4949861	1	-	0	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	exon	4949737	4949861	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	intron	4949862	4950140	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	CDS	4950141	4950208	1	-	2	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	exon	4950141	4950208	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	intron	4950209	4950447	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	CDS	4950448	4950478	0.99	-	0	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	exon	4950448	4950478	.	-	.	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
Ledus.S4	AUGUSTUS	start_codon	4950476	4950478	.	-	0	transcript_id "Ledus.S4G065700.t1"; gene_id "Ledus.S4G065700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg985.t1 is derived from g7846.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6507016	6508590	.	+	.	Ledus.S2G086700
Ledus.S2	AUGUSTUS	transcript	6507016	6508590	.	+	.	transcript_id "Ledus.S2G086700.t1"; gene_id "Ledus.S2G086700"
Ledus.S2	AUGUSTUS	start_codon	6507016	6507018	.	+	0	transcript_id "Ledus.S2G086700.t1"; gene_id "Ledus.S2G086700"
Ledus.S2	AUGUSTUS	CDS	6507016	6508590	0.72	+	0	transcript_id "Ledus.S2G086700.t1"; gene_id "Ledus.S2G086700"
Ledus.S2	AUGUSTUS	exon	6507016	6508590	.	+	.	transcript_id "Ledus.S2G086700.t1"; gene_id "Ledus.S2G086700"
Ledus.S2	AUGUSTUS	stop_codon	6508591	6508593	.	+	0	transcript_id "Ledus.S2G086700.t1"; gene_id "Ledus.S2G086700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4969.t1 is derived from g2407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20925773	20926876	.	-	.	Ledus.S1G239000
Ledus.S1	AUGUSTUS	transcript	20925773	20926876	.	-	.	transcript_id "Ledus.S1G239000.t1"; gene_id "Ledus.S1G239000"
Ledus.S1	AUGUSTUS	stop_codon	20925770	20925772	.	-	0	transcript_id "Ledus.S1G239000.t1"; gene_id "Ledus.S1G239000"
Ledus.S1	AUGUSTUS	CDS	20925773	20926876	0.99	-	0	transcript_id "Ledus.S1G239000.t1"; gene_id "Ledus.S1G239000"
Ledus.S1	AUGUSTUS	exon	20925773	20926876	.	-	.	transcript_id "Ledus.S1G239000.t1"; gene_id "Ledus.S1G239000"
Ledus.S1	AUGUSTUS	start_codon	20926874	20926876	.	-	0	transcript_id "Ledus.S1G239000.t1"; gene_id "Ledus.S1G239000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7474.t1 is derived from g12145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3036858	3038629	.	+	.	Ledus.S5G025200
Ledus.S5	AUGUSTUS	transcript	3036858	3038629	.	+	.	transcript_id "Ledus.S5G025200.t1"; gene_id "Ledus.S5G025200"
Ledus.S5	AUGUSTUS	start_codon	3036858	3036860	.	+	0	transcript_id "Ledus.S5G025200.t1"; gene_id "Ledus.S5G025200"
Ledus.S5	AUGUSTUS	CDS	3036858	3037754	0.98	+	0	transcript_id "Ledus.S5G025200.t1"; gene_id "Ledus.S5G025200"
Ledus.S5	AUGUSTUS	exon	3036858	3037754	.	+	.	transcript_id "Ledus.S5G025200.t1"; gene_id "Ledus.S5G025200"
Ledus.S5	AUGUSTUS	intron	3037755	3037843	.	+	.	transcript_id "Ledus.S5G025200.t1"; gene_id "Ledus.S5G025200"
Ledus.S5	AUGUSTUS	CDS	3037844	3038629	0.47	+	0	transcript_id "Ledus.S5G025200.t1"; gene_id "Ledus.S5G025200"
Ledus.S5	AUGUSTUS	exon	3037844	3038629	.	+	.	transcript_id "Ledus.S5G025200.t1"; gene_id "Ledus.S5G025200"
Ledus.S5	AUGUSTUS	stop_codon	3038630	3038632	.	+	0	transcript_id "Ledus.S5G025200.t1"; gene_id "Ledus.S5G025200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12100.t1 is derived from g5719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9501441	9504885	.	+	.	Ledus.S4G125600
Ledus.S4	AUGUSTUS	transcript	9501441	9504885	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	start_codon	9501441	9501443	.	+	0	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9501441	9501770	0.67	+	0	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9501441	9501770	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	intron	9501771	9501929	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9501930	9502038	1	+	0	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9501930	9502038	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	intron	9502039	9502131	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9502132	9502237	1	+	2	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9502132	9502237	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	intron	9502238	9502356	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9502357	9502449	1	+	1	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9502357	9502449	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	intron	9502450	9502592	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9502593	9502686	1	+	1	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9502593	9502686	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	intron	9502687	9502880	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9502881	9502971	0.87	+	0	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9502881	9502971	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	intron	9502972	9503075	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9503076	9503173	1	+	2	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9503076	9503173	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	intron	9503174	9503365	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9503366	9503435	1	+	0	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9503366	9503435	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	intron	9503436	9503516	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9503517	9503605	1	+	2	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9503517	9503605	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	intron	9503606	9503702	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9503703	9503816	1	+	0	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9503703	9503816	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	intron	9503817	9503953	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9503954	9504030	1	+	0	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9503954	9504030	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	intron	9504031	9504154	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9504155	9504199	1	+	1	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9504155	9504199	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	intron	9504200	9504290	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	CDS	9504291	9504885	1	+	1	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	exon	9504291	9504885	.	+	.	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
Ledus.S4	AUGUSTUS	stop_codon	9504886	9504888	.	+	0	transcript_id "Ledus.S4G125600.t1"; gene_id "Ledus.S4G125600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1664.t1 is derived from g8525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11763882	11764829	.	-	.	Ledus.S2G154600
Ledus.S2	AUGUSTUS	transcript	11763882	11764829	.	-	.	transcript_id "Ledus.S2G154600.t1"; gene_id "Ledus.S2G154600"
Ledus.S2	AUGUSTUS	stop_codon	11763879	11763881	.	-	0	transcript_id "Ledus.S2G154600.t1"; gene_id "Ledus.S2G154600"
Ledus.S2	AUGUSTUS	CDS	11763882	11764829	0.89	-	0	transcript_id "Ledus.S2G154600.t1"; gene_id "Ledus.S2G154600"
Ledus.S2	AUGUSTUS	exon	11763882	11764829	.	-	.	transcript_id "Ledus.S2G154600.t1"; gene_id "Ledus.S2G154600"
Ledus.S2	AUGUSTUS	start_codon	11764827	11764829	.	-	0	transcript_id "Ledus.S2G154600.t1"; gene_id "Ledus.S2G154600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5964.t1 is derived from g3407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28060949	28063126	.	+	.	Ledus.S1G338500
Ledus.S1	AUGUSTUS	transcript	28060949	28063126	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	start_codon	28060949	28060951	.	+	0	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	CDS	28060949	28061055	0.72	+	0	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	exon	28060949	28061055	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	intron	28061056	28061148	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	CDS	28061149	28061234	0.57	+	1	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	exon	28061149	28061234	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	intron	28061235	28061486	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	CDS	28061487	28061500	0.48	+	2	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	exon	28061487	28061500	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	intron	28061501	28061874	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	CDS	28061875	28062404	0.99	+	0	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	exon	28061875	28062404	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	intron	28062405	28062487	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	CDS	28062488	28062614	0.89	+	1	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	exon	28062488	28062614	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	intron	28062615	28062851	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	CDS	28062852	28062881	0.57	+	0	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	exon	28062852	28062881	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	intron	28062882	28063084	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	CDS	28063085	28063126	0.69	+	0	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	exon	28063085	28063126	.	+	.	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
Ledus.S1	AUGUSTUS	stop_codon	28063127	28063129	.	+	0	transcript_id "Ledus.S1G338500.t1"; gene_id "Ledus.S1G338500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5445.t1 is derived from g2884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24333908	24334213	.	-	.	Ledus.S1G286600
Ledus.S1	AUGUSTUS	transcript	24333908	24334213	.	-	.	transcript_id "Ledus.S1G286600.t1"; gene_id "Ledus.S1G286600"
Ledus.S1	AUGUSTUS	stop_codon	24333905	24333907	.	-	0	transcript_id "Ledus.S1G286600.t1"; gene_id "Ledus.S1G286600"
Ledus.S1	AUGUSTUS	CDS	24333908	24334213	0.75	-	0	transcript_id "Ledus.S1G286600.t1"; gene_id "Ledus.S1G286600"
Ledus.S1	AUGUSTUS	exon	24333908	24334213	.	-	.	transcript_id "Ledus.S1G286600.t1"; gene_id "Ledus.S1G286600"
Ledus.S1	AUGUSTUS	start_codon	24334211	24334213	.	-	0	transcript_id "Ledus.S1G286600.t1"; gene_id "Ledus.S1G286600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4317.t1 is derived from g1753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16191295	16192677	.	+	.	Ledus.S1G173800
Ledus.S1	AUGUSTUS	transcript	16191295	16192677	.	+	.	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	start_codon	16191295	16191297	.	+	0	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	CDS	16191295	16191340	0.87	+	0	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	exon	16191295	16191340	.	+	.	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	intron	16191341	16191447	.	+	.	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	CDS	16191448	16191938	0.67	+	2	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	exon	16191448	16191938	.	+	.	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	intron	16191939	16192017	.	+	.	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	CDS	16192018	16192095	0.97	+	0	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	exon	16192018	16192095	.	+	.	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	intron	16192096	16192173	.	+	.	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	CDS	16192174	16192344	0.58	+	0	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	exon	16192174	16192344	.	+	.	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	intron	16192345	16192506	.	+	.	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	CDS	16192507	16192677	0.87	+	0	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	exon	16192507	16192677	.	+	.	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
Ledus.S1	AUGUSTUS	stop_codon	16192678	16192680	.	+	0	transcript_id "Ledus.S1G173800.t1"; gene_id "Ledus.S1G173800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12025.t1 is derived from g5644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8905567	8906181	.	+	.	Ledus.S4G118100
Ledus.S4	AUGUSTUS	transcript	8905567	8906181	.	+	.	transcript_id "Ledus.S4G118100.t1"; gene_id "Ledus.S4G118100"
Ledus.S4	AUGUSTUS	start_codon	8905567	8905569	.	+	0	transcript_id "Ledus.S4G118100.t1"; gene_id "Ledus.S4G118100"
Ledus.S4	AUGUSTUS	CDS	8905567	8906181	0.95	+	0	transcript_id "Ledus.S4G118100.t1"; gene_id "Ledus.S4G118100"
Ledus.S4	AUGUSTUS	exon	8905567	8906181	.	+	.	transcript_id "Ledus.S4G118100.t1"; gene_id "Ledus.S4G118100"
Ledus.S4	AUGUSTUS	stop_codon	8906182	8906184	.	+	0	transcript_id "Ledus.S4G118100.t1"; gene_id "Ledus.S4G118100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10922.t1 is derived from g4540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	594934	597870	.	-	.	Ledus.S4G007800
Ledus.S4	AUGUSTUS	transcript	594934	597870	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	stop_codon	594931	594933	.	-	0	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	CDS	594934	595073	0.46	-	2	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	exon	594934	595073	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	intron	595074	595398	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	CDS	595399	595478	0.95	-	1	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	exon	595399	595478	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	intron	595479	595567	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	CDS	595568	595658	1	-	2	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	exon	595568	595658	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	intron	595659	595743	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	CDS	595744	595811	1	-	1	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	exon	595744	595811	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	intron	595812	595907	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	CDS	595908	596067	1	-	2	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	exon	595908	596067	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	intron	596068	596225	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	CDS	596226	596412	1	-	0	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	exon	596226	596412	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	intron	596413	596516	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	CDS	596517	596792	0.99	-	0	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	exon	596517	596792	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	intron	596793	596988	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	CDS	596989	597226	1	-	1	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	exon	596989	597226	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	intron	597227	597343	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	CDS	597344	597870	0.9	-	0	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	exon	597344	597870	.	-	.	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
Ledus.S4	AUGUSTUS	start_codon	597868	597870	.	-	0	transcript_id "Ledus.S4G007800.t1"; gene_id "Ledus.S4G007800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12892.t1 is derived from g6465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C26	AUGUSTUS	gene	52	180	.	+	.	Ledus.C26G000100
Ledus.C26	AUGUSTUS	transcript	52	180	.	+	.	transcript_id "Ledus.C26G000100.t1"; gene_id "Ledus.C26G000100"
Ledus.C26	AUGUSTUS	CDS	52	180	0.38	+	0	transcript_id "Ledus.C26G000100.t1"; gene_id "Ledus.C26G000100"
Ledus.C26	AUGUSTUS	exon	52	180	.	+	.	transcript_id "Ledus.C26G000100.t1"; gene_id "Ledus.C26G000100"
Ledus.C26	AUGUSTUS	stop_codon	181	183	.	+	0	transcript_id "Ledus.C26G000100.t1"; gene_id "Ledus.C26G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5304.t1 is derived from g2743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23202464	23204586	.	-	.	Ledus.S1G272500
Ledus.S1	AUGUSTUS	transcript	23202464	23204586	.	-	.	transcript_id "Ledus.S1G272500.t1"; gene_id "Ledus.S1G272500"
Ledus.S1	AUGUSTUS	stop_codon	23202461	23202463	.	-	0	transcript_id "Ledus.S1G272500.t1"; gene_id "Ledus.S1G272500"
Ledus.S1	AUGUSTUS	CDS	23202464	23203688	0.94	-	1	transcript_id "Ledus.S1G272500.t1"; gene_id "Ledus.S1G272500"
Ledus.S1	AUGUSTUS	exon	23202464	23203688	.	-	.	transcript_id "Ledus.S1G272500.t1"; gene_id "Ledus.S1G272500"
Ledus.S1	AUGUSTUS	intron	23203689	23203869	.	-	.	transcript_id "Ledus.S1G272500.t1"; gene_id "Ledus.S1G272500"
Ledus.S1	AUGUSTUS	CDS	23203870	23204102	0.98	-	0	transcript_id "Ledus.S1G272500.t1"; gene_id "Ledus.S1G272500"
Ledus.S1	AUGUSTUS	exon	23203870	23204102	.	-	.	transcript_id "Ledus.S1G272500.t1"; gene_id "Ledus.S1G272500"
Ledus.S1	AUGUSTUS	intron	23204103	23204238	.	-	.	transcript_id "Ledus.S1G272500.t1"; gene_id "Ledus.S1G272500"
Ledus.S1	AUGUSTUS	CDS	23204239	23204586	0.73	-	0	transcript_id "Ledus.S1G272500.t1"; gene_id "Ledus.S1G272500"
Ledus.S1	AUGUSTUS	exon	23204239	23204586	.	-	.	transcript_id "Ledus.S1G272500.t1"; gene_id "Ledus.S1G272500"
Ledus.S1	AUGUSTUS	start_codon	23204584	23204586	.	-	0	transcript_id "Ledus.S1G272500.t1"; gene_id "Ledus.S1G272500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3671.t1 is derived from g1107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10592699	10597360	.	-	.	Ledus.S1G109200
Ledus.S1	AUGUSTUS	transcript	10592699	10597360	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	stop_codon	10592696	10592698	.	-	0	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	CDS	10592699	10592773	1	-	0	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	exon	10592699	10592773	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	intron	10592774	10592918	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	CDS	10592919	10593047	0.83	-	0	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	exon	10592919	10593047	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	intron	10593048	10593157	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	CDS	10593158	10593244	0.84	-	0	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	exon	10593158	10593244	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	intron	10593245	10593470	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	CDS	10593471	10593619	1	-	2	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	exon	10593471	10593619	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	intron	10593620	10593806	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	CDS	10593807	10593861	1	-	0	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	exon	10593807	10593861	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	intron	10593862	10594019	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	CDS	10594020	10596302	0.87	-	0	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	exon	10594020	10596302	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	intron	10596303	10596430	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	CDS	10596431	10596585	0.97	-	2	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	exon	10596431	10596585	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	intron	10596586	10596782	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	CDS	10596783	10596912	1	-	0	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	exon	10596783	10596912	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	intron	10596913	10597135	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	CDS	10597136	10597360	0.99	-	0	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	exon	10597136	10597360	.	-	.	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
Ledus.S1	AUGUSTUS	start_codon	10597358	10597360	.	-	0	transcript_id "Ledus.S1G109200.t1"; gene_id "Ledus.S1G109200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1717.t1 is derived from g8578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12092906	12100534	.	+	.	Ledus.S2G159900
Ledus.S2	AUGUSTUS	transcript	12092906	12100534	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	start_codon	12092906	12092908	.	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12092906	12093379	0.93	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12092906	12093379	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12093380	12093609	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12093610	12093675	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12093610	12093675	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12093676	12093855	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12093856	12094029	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12093856	12094029	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12094030	12094129	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12094130	12094260	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12094130	12094260	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12094261	12094403	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12094404	12094480	1	+	1	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12094404	12094480	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12094481	12094614	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12094615	12094796	1	+	2	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12094615	12094796	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12094797	12094965	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12094966	12095043	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12094966	12095043	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12095044	12095169	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12095170	12095302	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12095170	12095302	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12095303	12095400	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12095401	12095461	1	+	2	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12095401	12095461	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12095462	12095601	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12095602	12095683	1	+	1	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12095602	12095683	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12095684	12095777	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12095778	12095906	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12095778	12095906	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12095907	12095989	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12095990	12096133	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12095990	12096133	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12096134	12096223	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12096224	12096326	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12096224	12096326	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12096327	12096410	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12096411	12096548	1	+	2	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12096411	12096548	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12096549	12096795	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12096796	12096866	1	+	2	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12096796	12096866	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12096867	12096943	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12096944	12097116	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12096944	12097116	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12097117	12097178	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12097179	12097272	0.99	+	1	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12097179	12097272	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12097273	12097384	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12097385	12097482	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12097385	12097482	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12097483	12097586	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12097587	12097722	1	+	1	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12097587	12097722	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12097723	12097808	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12097809	12097915	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12097809	12097915	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12097916	12097997	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12097998	12098093	1	+	1	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12097998	12098093	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12098094	12098271	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12098272	12098359	1	+	1	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12098272	12098359	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12098360	12098447	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12098448	12098562	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12098448	12098562	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12098563	12098808	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12098809	12098935	1	+	2	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12098809	12098935	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12098936	12099019	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12099020	12099143	1	+	1	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12099020	12099143	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12099144	12099228	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12099229	12099306	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12099229	12099306	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12099307	12099406	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12099407	12099522	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12099407	12099522	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12099523	12099631	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12099632	12099694	0.8	+	1	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12099632	12099694	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12099695	12099796	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12099797	12099899	1	+	1	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12099797	12099899	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12099900	12100022	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12100023	12100151	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12100023	12100151	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12100152	12100307	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12100308	12100419	1	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12100308	12100419	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	intron	12100420	12100505	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	CDS	12100506	12100534	1	+	2	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	exon	12100506	12100534	.	+	.	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
Ledus.S2	AUGUSTUS	stop_codon	12100535	12100537	.	+	0	transcript_id "Ledus.S2G159900.t1"; gene_id "Ledus.S2G159900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12502.t1 is derived from g6123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12430680	12431705	.	+	.	Ledus.S4G165800
Ledus.S4	AUGUSTUS	transcript	12430680	12431705	.	+	.	transcript_id "Ledus.S4G165800.t1"; gene_id "Ledus.S4G165800"
Ledus.S4	AUGUSTUS	start_codon	12430680	12430682	.	+	0	transcript_id "Ledus.S4G165800.t1"; gene_id "Ledus.S4G165800"
Ledus.S4	AUGUSTUS	CDS	12430680	12431705	0.54	+	0	transcript_id "Ledus.S4G165800.t1"; gene_id "Ledus.S4G165800"
Ledus.S4	AUGUSTUS	exon	12430680	12431705	.	+	.	transcript_id "Ledus.S4G165800.t1"; gene_id "Ledus.S4G165800"
Ledus.S4	AUGUSTUS	stop_codon	12431706	12431708	.	+	0	transcript_id "Ledus.S4G165800.t1"; gene_id "Ledus.S4G165800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8080.t1 is derived from g12751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9068279	9073990	.	+	.	Ledus.S5G085800
Ledus.S5	AUGUSTUS	transcript	9068279	9073990	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	start_codon	9068279	9068281	.	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9068279	9068329	0.84	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9068279	9068329	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9068330	9068451	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9068452	9068544	1	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9068452	9068544	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9068545	9068620	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9068621	9068685	1	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9068621	9068685	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9068686	9068769	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9068770	9068824	0.92	+	1	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9068770	9068824	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9068825	9068933	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9068934	9069023	0.92	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9068934	9069023	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9069024	9069146	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9069147	9069231	1	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9069147	9069231	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9069232	9069321	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9069322	9069417	1	+	2	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9069322	9069417	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9069418	9069592	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9069593	9069777	1	+	2	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9069593	9069777	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9069778	9069873	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9069874	9069962	1	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9069874	9069962	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9069963	9070048	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9070049	9070148	1	+	1	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9070049	9070148	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9070149	9070227	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9070228	9070262	0.76	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9070228	9070262	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9070263	9070624	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9070625	9070723	0.59	+	1	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9070625	9070723	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9070724	9070796	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9070797	9070877	0.33	+	1	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9070797	9070877	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9070878	9071091	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9071092	9071177	0.25	+	1	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9071092	9071177	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9071178	9071289	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9071290	9071435	0.98	+	2	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9071290	9071435	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9071436	9071534	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9071535	9071601	0.94	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9071535	9071601	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9071602	9071706	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9071707	9071786	0.99	+	2	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9071707	9071786	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9071787	9071999	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9072000	9072098	0.97	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9072000	9072098	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9072099	9072278	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9072279	9072335	0.99	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9072279	9072335	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9072336	9072408	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9072409	9072464	1	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9072409	9072464	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9072465	9072554	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9072555	9072896	1	+	1	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9072555	9072896	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9072897	9072969	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9072970	9073141	1	+	1	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9072970	9073141	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9073142	9073222	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9073223	9073429	1	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9073223	9073429	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9073430	9073508	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9073509	9073759	1	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9073509	9073759	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	intron	9073760	9073842	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	CDS	9073843	9073990	0.99	+	1	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	exon	9073843	9073990	.	+	.	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
Ledus.S5	AUGUSTUS	stop_codon	9073991	9073993	.	+	0	transcript_id "Ledus.S5G085800.t1"; gene_id "Ledus.S5G085800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8584.t1 is derived from g9614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	389196	389959	.	-	.	Ledus.S3G006100
Ledus.S3	AUGUSTUS	transcript	389196	389959	.	-	.	transcript_id "Ledus.S3G006100.t1"; gene_id "Ledus.S3G006100"
Ledus.S3	AUGUSTUS	stop_codon	389193	389195	.	-	0	transcript_id "Ledus.S3G006100.t1"; gene_id "Ledus.S3G006100"
Ledus.S3	AUGUSTUS	CDS	389196	389202	0.99	-	1	transcript_id "Ledus.S3G006100.t1"; gene_id "Ledus.S3G006100"
Ledus.S3	AUGUSTUS	exon	389196	389202	.	-	.	transcript_id "Ledus.S3G006100.t1"; gene_id "Ledus.S3G006100"
Ledus.S3	AUGUSTUS	intron	389203	389448	.	-	.	transcript_id "Ledus.S3G006100.t1"; gene_id "Ledus.S3G006100"
Ledus.S3	AUGUSTUS	CDS	389449	389573	0.99	-	0	transcript_id "Ledus.S3G006100.t1"; gene_id "Ledus.S3G006100"
Ledus.S3	AUGUSTUS	exon	389449	389573	.	-	.	transcript_id "Ledus.S3G006100.t1"; gene_id "Ledus.S3G006100"
Ledus.S3	AUGUSTUS	intron	389574	389728	.	-	.	transcript_id "Ledus.S3G006100.t1"; gene_id "Ledus.S3G006100"
Ledus.S3	AUGUSTUS	CDS	389729	389959	0.8	-	0	transcript_id "Ledus.S3G006100.t1"; gene_id "Ledus.S3G006100"
Ledus.S3	AUGUSTUS	exon	389729	389959	.	-	.	transcript_id "Ledus.S3G006100.t1"; gene_id "Ledus.S3G006100"
Ledus.S3	AUGUSTUS	start_codon	389957	389959	.	-	0	transcript_id "Ledus.S3G006100.t1"; gene_id "Ledus.S3G006100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8568.t1 is derived from g9598.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	213513	216926	.	+	.	Ledus.S3G004500
Ledus.S3	AUGUSTUS	transcript	213513	216926	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	start_codon	213513	213515	.	+	0	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	213513	213675	0.84	+	0	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	213513	213675	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	213676	213758	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	213759	214095	1	+	2	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	213759	214095	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	214096	214183	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	214184	214301	1	+	1	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	214184	214301	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	214302	214394	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	214395	214502	1	+	0	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	214395	214502	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	214503	214587	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	214588	214760	1	+	0	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	214588	214760	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	214761	214856	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	214857	214956	1	+	1	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	214857	214956	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	214957	215041	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	215042	215116	0.89	+	0	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	215042	215116	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	215117	215229	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	215230	215360	1	+	0	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	215230	215360	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	215361	215440	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	215441	215576	1	+	1	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	215441	215576	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	215577	215684	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	215685	215804	0.94	+	0	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	215685	215804	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	215805	215888	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	215889	216035	1	+	0	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	215889	216035	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	216036	216174	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	216175	216279	1	+	0	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	216175	216279	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	216280	216369	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	216370	216468	1	+	0	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	216370	216468	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	216469	216559	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	216560	216627	1	+	0	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	216560	216627	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	intron	216628	216721	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	CDS	216722	216926	1	+	1	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	exon	216722	216926	.	+	.	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
Ledus.S3	AUGUSTUS	stop_codon	216927	216929	.	+	0	transcript_id "Ledus.S3G004500.t1"; gene_id "Ledus.S3G004500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6134.t1 is derived from g3577.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29154474	29156911	.	-	.	Ledus.S1G355500
Ledus.S1	AUGUSTUS	transcript	29154474	29156911	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	stop_codon	29154471	29154473	.	-	0	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29154474	29154578	0.82	-	0	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29154474	29154578	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	intron	29154579	29154715	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29154716	29154905	1	-	1	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29154716	29154905	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	intron	29154906	29155044	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29155045	29155195	0.85	-	2	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29155045	29155195	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	intron	29155196	29155360	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29155361	29156217	0.84	-	1	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29155361	29156217	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	intron	29156218	29156388	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29156389	29156539	0.99	-	2	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29156389	29156539	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	intron	29156540	29156643	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29156644	29156682	0.88	-	2	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29156644	29156682	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	intron	29156683	29156802	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29156803	29156911	0.89	-	0	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29156803	29156911	.	-	.	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	start_codon	29156909	29156911	.	-	0	transcript_id "Ledus.S1G355500.t1"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	transcript	29154474	29156911	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	stop_codon	29154471	29154473	.	-	0	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29154474	29154578	0.78	-	0	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29154474	29154578	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	intron	29154579	29154715	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29154716	29154827	0.91	-	1	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29154716	29154827	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	intron	29154828	29155044	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29155045	29155195	0.82	-	2	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29155045	29155195	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	intron	29155196	29155360	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29155361	29156217	0.76	-	1	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29155361	29156217	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	intron	29156218	29156388	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29156389	29156539	1	-	2	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29156389	29156539	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	intron	29156540	29156643	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29156644	29156682	0.91	-	2	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29156644	29156682	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	intron	29156683	29156802	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	CDS	29156803	29156911	0.91	-	0	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	exon	29156803	29156911	.	-	.	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
Ledus.S1	AUGUSTUS	start_codon	29156909	29156911	.	-	0	transcript_id "Ledus.S1G355500.t2"; gene_id "Ledus.S1G355500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13164.t1 is derived from g6974.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7847094	7847504	.	-	.	Ledus.S6G022600
Ledus.S6	AUGUSTUS	transcript	7847094	7847504	.	-	.	transcript_id "Ledus.S6G022600.t1"; gene_id "Ledus.S6G022600"
Ledus.S6	AUGUSTUS	stop_codon	7847091	7847093	.	-	0	transcript_id "Ledus.S6G022600.t1"; gene_id "Ledus.S6G022600"
Ledus.S6	AUGUSTUS	CDS	7847094	7847504	0.34	-	0	transcript_id "Ledus.S6G022600.t1"; gene_id "Ledus.S6G022600"
Ledus.S6	AUGUSTUS	exon	7847094	7847504	.	-	.	transcript_id "Ledus.S6G022600.t1"; gene_id "Ledus.S6G022600"
Ledus.S6	AUGUSTUS	start_codon	7847502	7847504	.	-	0	transcript_id "Ledus.S6G022600.t1"; gene_id "Ledus.S6G022600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2831.t1 is derived from g265.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4003016	4006636	.	-	.	Ledus.S1G025200
Ledus.S1	AUGUSTUS	transcript	4003016	4006636	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	stop_codon	4003013	4003015	.	-	0	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4003016	4003063	1	-	0	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4003016	4003063	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4003064	4003210	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4003211	4003264	1	-	0	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4003211	4003264	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4003265	4003353	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4003354	4003401	0.97	-	0	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4003354	4003401	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4003402	4003526	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4003527	4003589	1	-	0	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4003527	4003589	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4003590	4003682	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4003683	4003923	0.98	-	1	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4003683	4003923	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4003924	4004192	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4004193	4004272	0.98	-	0	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4004193	4004272	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4004273	4004366	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4004367	4004502	1	-	1	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4004367	4004502	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4004503	4004627	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4004628	4004833	1	-	0	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4004628	4004833	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4004834	4005011	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4005012	4005077	0.99	-	0	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4005012	4005077	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4005078	4005209	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4005210	4005324	0.79	-	1	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4005210	4005324	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4005325	4005576	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4005577	4005685	0.97	-	2	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4005577	4005685	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4005686	4005870	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4005871	4005964	1	-	0	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4005871	4005964	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4005965	4006053	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4006054	4006160	1	-	2	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4006054	4006160	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4006161	4006257	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4006258	4006351	1	-	0	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4006258	4006351	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	intron	4006352	4006528	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	CDS	4006529	4006636	0.87	-	0	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	exon	4006529	4006636	.	-	.	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
Ledus.S1	AUGUSTUS	start_codon	4006634	4006636	.	-	0	transcript_id "Ledus.S1G025200.t1"; gene_id "Ledus.S1G025200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11580.t1 is derived from g5198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5380429	5382132	.	-	.	Ledus.S4G073600
Ledus.S4	AUGUSTUS	transcript	5380429	5382132	.	-	.	transcript_id "Ledus.S4G073600.t1"; gene_id "Ledus.S4G073600"
Ledus.S4	AUGUSTUS	stop_codon	5380426	5380428	.	-	0	transcript_id "Ledus.S4G073600.t1"; gene_id "Ledus.S4G073600"
Ledus.S4	AUGUSTUS	CDS	5380429	5381574	1	-	0	transcript_id "Ledus.S4G073600.t1"; gene_id "Ledus.S4G073600"
Ledus.S4	AUGUSTUS	exon	5380429	5381574	.	-	.	transcript_id "Ledus.S4G073600.t1"; gene_id "Ledus.S4G073600"
Ledus.S4	AUGUSTUS	intron	5381575	5381799	.	-	.	transcript_id "Ledus.S4G073600.t1"; gene_id "Ledus.S4G073600"
Ledus.S4	AUGUSTUS	CDS	5381800	5381819	0.99	-	2	transcript_id "Ledus.S4G073600.t1"; gene_id "Ledus.S4G073600"
Ledus.S4	AUGUSTUS	exon	5381800	5381819	.	-	.	transcript_id "Ledus.S4G073600.t1"; gene_id "Ledus.S4G073600"
Ledus.S4	AUGUSTUS	intron	5381820	5382107	.	-	.	transcript_id "Ledus.S4G073600.t1"; gene_id "Ledus.S4G073600"
Ledus.S4	AUGUSTUS	CDS	5382108	5382132	0.97	-	0	transcript_id "Ledus.S4G073600.t1"; gene_id "Ledus.S4G073600"
Ledus.S4	AUGUSTUS	exon	5382108	5382132	.	-	.	transcript_id "Ledus.S4G073600.t1"; gene_id "Ledus.S4G073600"
Ledus.S4	AUGUSTUS	start_codon	5382130	5382132	.	-	0	transcript_id "Ledus.S4G073600.t1"; gene_id "Ledus.S4G073600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10885.t1 is derived from g4503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	316483	318255	.	-	.	Ledus.S4G004100
Ledus.S4	AUGUSTUS	transcript	316483	318255	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	stop_codon	316480	316482	.	-	0	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	CDS	316483	316632	0.99	-	0	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	exon	316483	316632	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	intron	316633	316721	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	CDS	316722	316792	1	-	2	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	exon	316722	316792	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	intron	316793	316870	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	CDS	316871	317057	1	-	0	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	exon	316871	317057	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	intron	317058	317198	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	CDS	317199	317443	1	-	2	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	exon	317199	317443	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	intron	317444	317591	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	CDS	317592	317733	1	-	0	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	exon	317592	317733	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	intron	317734	317819	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	CDS	317820	318050	1	-	0	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	exon	317820	318050	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	intron	318051	318177	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	CDS	318178	318255	0.97	-	0	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	exon	318178	318255	.	-	.	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
Ledus.S4	AUGUSTUS	start_codon	318253	318255	.	-	0	transcript_id "Ledus.S4G004100.t1"; gene_id "Ledus.S4G004100"
# This transcript jg494.t2 is derived from g7355.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg495.t1 is derived from g7356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2898203	2900425	.	+	.	Ledus.S2G037700
Ledus.S2	AUGUSTUS	transcript	2898203	2900425	.	+	.	transcript_id "Ledus.S2G037700.t1"; gene_id "Ledus.S2G037700"
Ledus.S2	AUGUSTUS	start_codon	2898203	2898205	.	+	0	transcript_id "Ledus.S2G037700.t1"; gene_id "Ledus.S2G037700"
Ledus.S2	AUGUSTUS	CDS	2898203	2898358	0.72	+	0	transcript_id "Ledus.S2G037700.t1"; gene_id "Ledus.S2G037700"
Ledus.S2	AUGUSTUS	exon	2898203	2898358	.	+	.	transcript_id "Ledus.S2G037700.t1"; gene_id "Ledus.S2G037700"
Ledus.S2	AUGUSTUS	intron	2898359	2898447	.	+	.	transcript_id "Ledus.S2G037700.t1"; gene_id "Ledus.S2G037700"
Ledus.S2	AUGUSTUS	CDS	2898448	2898500	1	+	0	transcript_id "Ledus.S2G037700.t1"; gene_id "Ledus.S2G037700"
Ledus.S2	AUGUSTUS	exon	2898448	2898500	.	+	.	transcript_id "Ledus.S2G037700.t1"; gene_id "Ledus.S2G037700"
Ledus.S2	AUGUSTUS	intron	2898501	2898615	.	+	.	transcript_id "Ledus.S2G037700.t1"; gene_id "Ledus.S2G037700"
Ledus.S2	AUGUSTUS	CDS	2898616	2900425	0.87	+	1	transcript_id "Ledus.S2G037700.t1"; gene_id "Ledus.S2G037700"
Ledus.S2	AUGUSTUS	exon	2898616	2900425	.	+	.	transcript_id "Ledus.S2G037700.t1"; gene_id "Ledus.S2G037700"
Ledus.S2	AUGUSTUS	stop_codon	2900426	2900428	.	+	0	transcript_id "Ledus.S2G037700.t1"; gene_id "Ledus.S2G037700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7643.t1 is derived from g12314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4781260	4782515	.	+	.	Ledus.S5G042100
Ledus.S5	AUGUSTUS	transcript	4781260	4782515	.	+	.	transcript_id "Ledus.S5G042100.t1"; gene_id "Ledus.S5G042100"
Ledus.S5	AUGUSTUS	start_codon	4781260	4781262	.	+	0	transcript_id "Ledus.S5G042100.t1"; gene_id "Ledus.S5G042100"
Ledus.S5	AUGUSTUS	CDS	4781260	4781994	0.73	+	0	transcript_id "Ledus.S5G042100.t1"; gene_id "Ledus.S5G042100"
Ledus.S5	AUGUSTUS	exon	4781260	4781994	.	+	.	transcript_id "Ledus.S5G042100.t1"; gene_id "Ledus.S5G042100"
Ledus.S5	AUGUSTUS	intron	4781995	4782085	.	+	.	transcript_id "Ledus.S5G042100.t1"; gene_id "Ledus.S5G042100"
Ledus.S5	AUGUSTUS	CDS	4782086	4782189	0.93	+	0	transcript_id "Ledus.S5G042100.t1"; gene_id "Ledus.S5G042100"
Ledus.S5	AUGUSTUS	exon	4782086	4782189	.	+	.	transcript_id "Ledus.S5G042100.t1"; gene_id "Ledus.S5G042100"
Ledus.S5	AUGUSTUS	intron	4782190	4782388	.	+	.	transcript_id "Ledus.S5G042100.t1"; gene_id "Ledus.S5G042100"
Ledus.S5	AUGUSTUS	CDS	4782389	4782515	0.47	+	1	transcript_id "Ledus.S5G042100.t1"; gene_id "Ledus.S5G042100"
Ledus.S5	AUGUSTUS	exon	4782389	4782515	.	+	.	transcript_id "Ledus.S5G042100.t1"; gene_id "Ledus.S5G042100"
Ledus.S5	AUGUSTUS	stop_codon	4782516	4782518	.	+	0	transcript_id "Ledus.S5G042100.t1"; gene_id "Ledus.S5G042100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7446.t1 is derived from g12117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2740299	2740604	.	-	.	Ledus.S5G022400
Ledus.S5	AUGUSTUS	transcript	2740299	2740604	.	-	.	transcript_id "Ledus.S5G022400.t1"; gene_id "Ledus.S5G022400"
Ledus.S5	AUGUSTUS	stop_codon	2740296	2740298	.	-	0	transcript_id "Ledus.S5G022400.t1"; gene_id "Ledus.S5G022400"
Ledus.S5	AUGUSTUS	CDS	2740299	2740604	1	-	0	transcript_id "Ledus.S5G022400.t1"; gene_id "Ledus.S5G022400"
Ledus.S5	AUGUSTUS	exon	2740299	2740604	.	-	.	transcript_id "Ledus.S5G022400.t1"; gene_id "Ledus.S5G022400"
Ledus.S5	AUGUSTUS	start_codon	2740602	2740604	.	-	0	transcript_id "Ledus.S5G022400.t1"; gene_id "Ledus.S5G022400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12066.t1 is derived from g5685.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9289093	9290171	.	-	.	Ledus.S4G122200
Ledus.S4	AUGUSTUS	transcript	9289093	9290171	.	-	.	transcript_id "Ledus.S4G122200.t1"; gene_id "Ledus.S4G122200"
Ledus.S4	AUGUSTUS	stop_codon	9289090	9289092	.	-	0	transcript_id "Ledus.S4G122200.t1"; gene_id "Ledus.S4G122200"
Ledus.S4	AUGUSTUS	CDS	9289093	9290002	0.81	-	1	transcript_id "Ledus.S4G122200.t1"; gene_id "Ledus.S4G122200"
Ledus.S4	AUGUSTUS	exon	9289093	9290002	.	-	.	transcript_id "Ledus.S4G122200.t1"; gene_id "Ledus.S4G122200"
Ledus.S4	AUGUSTUS	intron	9290003	9290124	.	-	.	transcript_id "Ledus.S4G122200.t1"; gene_id "Ledus.S4G122200"
Ledus.S4	AUGUSTUS	CDS	9290125	9290171	0.7	-	0	transcript_id "Ledus.S4G122200.t1"; gene_id "Ledus.S4G122200"
Ledus.S4	AUGUSTUS	exon	9290125	9290171	.	-	.	transcript_id "Ledus.S4G122200.t1"; gene_id "Ledus.S4G122200"
Ledus.S4	AUGUSTUS	start_codon	9290169	9290171	.	-	0	transcript_id "Ledus.S4G122200.t1"; gene_id "Ledus.S4G122200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4168.t1 is derived from g1604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15092498	15094332	.	+	.	Ledus.S1G158900
Ledus.S1	AUGUSTUS	transcript	15092498	15094332	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	start_codon	15092498	15092500	.	+	0	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	CDS	15092498	15092574	1	+	0	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	exon	15092498	15092574	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	intron	15092575	15092657	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	CDS	15092658	15092709	1	+	1	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	exon	15092658	15092709	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	intron	15092710	15092868	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	CDS	15092869	15093067	1	+	0	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	exon	15092869	15093067	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	intron	15093068	15093150	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	CDS	15093151	15093230	1	+	2	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	exon	15093151	15093230	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	intron	15093231	15093318	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	CDS	15093319	15093438	1	+	0	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	exon	15093319	15093438	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	intron	15093439	15093519	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	CDS	15093520	15093573	1	+	0	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	exon	15093520	15093573	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	intron	15093574	15093686	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	CDS	15093687	15093753	1	+	0	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	exon	15093687	15093753	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	intron	15093754	15093861	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	CDS	15093862	15093962	1	+	2	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	exon	15093862	15093962	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	intron	15093963	15094052	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	CDS	15094053	15094160	1	+	0	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	exon	15094053	15094160	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	intron	15094161	15094233	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	CDS	15094234	15094332	1	+	0	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	exon	15094234	15094332	.	+	.	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
Ledus.S1	AUGUSTUS	stop_codon	15094333	15094335	.	+	0	transcript_id "Ledus.S1G158900.t1"; gene_id "Ledus.S1G158900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4024.t1 is derived from g1460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14241606	14246052	.	-	.	Ledus.S1G144500
Ledus.S1	AUGUSTUS	transcript	14241606	14246052	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	stop_codon	14241603	14241605	.	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14241606	14241740	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14241606	14241740	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14241741	14241828	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14241829	14241864	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14241829	14241864	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14241865	14241947	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14241948	14242028	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14241948	14242028	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14242029	14242103	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14242104	14242175	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14242104	14242175	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14242176	14242293	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14242294	14242377	0.99	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14242294	14242377	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14242378	14242530	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14242531	14242584	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14242531	14242584	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14242585	14242694	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14242695	14242780	1	-	2	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14242695	14242780	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14242781	14242884	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14242885	14242936	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14242885	14242936	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14242937	14243033	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14243034	14243120	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14243034	14243120	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14243121	14243209	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14243210	14243264	1	-	1	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14243210	14243264	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14243265	14243393	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14243394	14243494	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14243394	14243494	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14243495	14243580	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14243581	14243757	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14243581	14243757	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14243758	14243848	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14243849	14243951	1	-	1	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14243849	14243951	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14243952	14244047	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14244048	14244106	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14244048	14244106	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14244107	14244210	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14244211	14244348	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14244211	14244348	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14244349	14244425	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14244426	14244515	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14244426	14244515	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14244516	14244699	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14244700	14244771	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14244700	14244771	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14244772	14244935	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14244936	14245034	1	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14244936	14245034	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14245035	14245171	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14245172	14245215	0.61	-	2	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14245172	14245215	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	intron	14245216	14245649	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	CDS	14245650	14246052	0.52	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	exon	14245650	14246052	.	-	.	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
Ledus.S1	AUGUSTUS	start_codon	14246050	14246052	.	-	0	transcript_id "Ledus.S1G144500.t1"; gene_id "Ledus.S1G144500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5250.t1 is derived from g2689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22728898	22737768	.	-	.	Ledus.S1G267100
Ledus.S1	AUGUSTUS	transcript	22728898	22737768	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	stop_codon	22728895	22728897	.	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22728898	22728908	0.97	-	2	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22728898	22728908	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22728909	22729305	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22729306	22729429	0.95	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22729306	22729429	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22729430	22729567	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22729568	22729654	1	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22729568	22729654	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22729655	22729762	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22729763	22729984	1	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22729763	22729984	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22729985	22730200	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22730201	22730269	1	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22730201	22730269	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22730270	22730357	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22730358	22731812	0.88	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22730358	22731812	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22731813	22731945	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22731946	22732158	1	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22731946	22732158	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22732159	22732332	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22732333	22732483	1	-	1	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22732333	22732483	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22732484	22732653	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22732654	22732888	1	-	2	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22732654	22732888	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22732889	22733115	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22733116	22733174	1	-	1	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22733116	22733174	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22733175	22733448	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22733449	22733738	1	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22733449	22733738	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22733739	22733869	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22733870	22734012	1	-	2	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22733870	22734012	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22734013	22734089	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22734090	22734144	1	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22734090	22734144	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22734145	22734259	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22734260	22734331	1	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22734260	22734331	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22734332	22734584	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22734585	22734653	0.74	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22734585	22734653	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22734654	22734750	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22734751	22734822	0.61	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22734751	22734822	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22734823	22734896	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22734897	22734980	0.65	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22734897	22734980	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22734981	22735223	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22735224	22735320	0.89	-	1	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22735224	22735320	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22735321	22735475	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22735476	22735577	0.42	-	1	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22735476	22735577	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22735578	22735669	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22735670	22735735	0.97	-	1	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22735670	22735735	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22735736	22735832	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22735833	22735963	1	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22735833	22735963	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22735964	22736050	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22736051	22736123	1	-	1	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22736051	22736123	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22736124	22736215	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22736216	22736303	1	-	2	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22736216	22736303	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22736304	22736388	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22736389	22736545	1	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22736389	22736545	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22736546	22736707	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22736708	22736811	1	-	2	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22736708	22736811	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22736812	22737057	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22737058	22737132	0.99	-	2	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22737058	22737132	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22737133	22737250	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22737251	22737330	0.99	-	1	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22737251	22737330	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22737331	22737422	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22737423	22737467	1	-	1	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22737423	22737467	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22737468	22737676	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22737677	22737768	0.95	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22737677	22737768	.	-	.	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	start_codon	22737766	22737768	.	-	0	transcript_id "Ledus.S1G267100.t1"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	transcript	22728898	22737768	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	stop_codon	22728895	22728897	.	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22728898	22728908	1	-	2	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22728898	22728908	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22728909	22729212	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22729213	22729429	1	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22729213	22729429	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22729430	22729567	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22729568	22729654	1	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22729568	22729654	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22729655	22729762	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22729763	22729984	0.99	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22729763	22729984	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22729985	22730200	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22730201	22730269	1	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22730201	22730269	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22730270	22730357	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22730358	22731812	0.94	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22730358	22731812	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22731813	22731945	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22731946	22732158	1	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22731946	22732158	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22732159	22732332	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22732333	22732483	1	-	1	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22732333	22732483	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22732484	22732653	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22732654	22732888	1	-	2	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22732654	22732888	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22732889	22733115	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22733116	22733174	1	-	1	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22733116	22733174	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22733175	22733448	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22733449	22733738	0.99	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22733449	22733738	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22733739	22733869	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22733870	22734012	1	-	2	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22733870	22734012	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22734013	22734089	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22734090	22734144	1	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22734090	22734144	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22734145	22734259	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22734260	22734331	1	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22734260	22734331	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22734332	22734584	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22734585	22734653	0.59	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22734585	22734653	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22734654	22734750	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22734751	22734822	0.38	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22734751	22734822	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22734823	22734896	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22734897	22734980	0.59	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22734897	22734980	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22734981	22735223	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22735224	22735320	0.87	-	1	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22735224	22735320	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22735321	22735475	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22735476	22735577	0.52	-	1	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22735476	22735577	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22735578	22735669	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22735670	22735735	0.97	-	1	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22735670	22735735	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22735736	22735832	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22735833	22735963	1	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22735833	22735963	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22735964	22736050	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22736051	22736123	1	-	1	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22736051	22736123	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22736124	22736215	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22736216	22736303	1	-	2	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22736216	22736303	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22736304	22736388	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22736389	22736545	1	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22736389	22736545	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22736546	22736707	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22736708	22736811	1	-	2	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22736708	22736811	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22736812	22737057	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22737058	22737132	1	-	2	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22737058	22737132	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22737133	22737250	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22737251	22737330	1	-	1	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22737251	22737330	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22737331	22737422	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22737423	22737467	1	-	1	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22737423	22737467	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	intron	22737468	22737676	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	CDS	22737677	22737768	0.97	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	exon	22737677	22737768	.	-	.	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
Ledus.S1	AUGUSTUS	start_codon	22737766	22737768	.	-	0	transcript_id "Ledus.S1G267100.t2"; gene_id "Ledus.S1G267100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5099.t1 is derived from g2538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21590416	21590715	.	-	.	Ledus.S1G252000
Ledus.S1	AUGUSTUS	transcript	21590416	21590715	.	-	.	transcript_id "Ledus.S1G252000.t1"; gene_id "Ledus.S1G252000"
Ledus.S1	AUGUSTUS	stop_codon	21590413	21590415	.	-	0	transcript_id "Ledus.S1G252000.t1"; gene_id "Ledus.S1G252000"
Ledus.S1	AUGUSTUS	CDS	21590416	21590715	0.72	-	0	transcript_id "Ledus.S1G252000.t1"; gene_id "Ledus.S1G252000"
Ledus.S1	AUGUSTUS	exon	21590416	21590715	.	-	.	transcript_id "Ledus.S1G252000.t1"; gene_id "Ledus.S1G252000"
Ledus.S1	AUGUSTUS	start_codon	21590713	21590715	.	-	0	transcript_id "Ledus.S1G252000.t1"; gene_id "Ledus.S1G252000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3266.t1 is derived from g701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7184693	7186707	.	-	.	Ledus.S1G068700
Ledus.S1	AUGUSTUS	transcript	7184693	7186707	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	stop_codon	7184690	7184692	.	-	0	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	CDS	7184693	7184775	1	-	2	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	exon	7184693	7184775	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	intron	7184776	7184931	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	CDS	7184932	7185105	1	-	2	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	exon	7184932	7185105	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	intron	7185106	7185181	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	CDS	7185182	7185300	1	-	1	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	exon	7185182	7185300	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	intron	7185301	7185414	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	CDS	7185415	7185481	0.98	-	2	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	exon	7185415	7185481	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	intron	7185482	7185565	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	CDS	7185566	7185627	1	-	1	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	exon	7185566	7185627	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	intron	7185628	7185711	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	CDS	7185712	7185906	1	-	1	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	exon	7185712	7185906	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	intron	7185907	7186017	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	CDS	7186018	7186211	0.99	-	0	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	exon	7186018	7186211	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	intron	7186212	7186289	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	CDS	7186290	7186455	0.97	-	1	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	exon	7186290	7186455	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	intron	7186456	7186696	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	CDS	7186697	7186707	0.97	-	0	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	exon	7186697	7186707	.	-	.	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
Ledus.S1	AUGUSTUS	start_codon	7186705	7186707	.	-	0	transcript_id "Ledus.S1G068700.t1"; gene_id "Ledus.S1G068700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg330.t1 is derived from g7191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1700010	1700402	.	-	.	Ledus.S2G021200
Ledus.S2	AUGUSTUS	transcript	1700010	1700402	.	-	.	transcript_id "Ledus.S2G021200.t1"; gene_id "Ledus.S2G021200"
Ledus.S2	AUGUSTUS	stop_codon	1700007	1700009	.	-	0	transcript_id "Ledus.S2G021200.t1"; gene_id "Ledus.S2G021200"
Ledus.S2	AUGUSTUS	CDS	1700010	1700402	0.55	-	0	transcript_id "Ledus.S2G021200.t1"; gene_id "Ledus.S2G021200"
Ledus.S2	AUGUSTUS	exon	1700010	1700402	.	-	.	transcript_id "Ledus.S2G021200.t1"; gene_id "Ledus.S2G021200"
Ledus.S2	AUGUSTUS	start_codon	1700400	1700402	.	-	0	transcript_id "Ledus.S2G021200.t1"; gene_id "Ledus.S2G021200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12643.t1 is derived from g6265.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13586897	13587463	.	+	.	Ledus.S4G179900
Ledus.S4	AUGUSTUS	transcript	13586897	13587463	.	+	.	transcript_id "Ledus.S4G179900.t1"; gene_id "Ledus.S4G179900"
Ledus.S4	AUGUSTUS	start_codon	13586897	13586899	.	+	0	transcript_id "Ledus.S4G179900.t1"; gene_id "Ledus.S4G179900"
Ledus.S4	AUGUSTUS	CDS	13586897	13587463	0.98	+	0	transcript_id "Ledus.S4G179900.t1"; gene_id "Ledus.S4G179900"
Ledus.S4	AUGUSTUS	exon	13586897	13587463	.	+	.	transcript_id "Ledus.S4G179900.t1"; gene_id "Ledus.S4G179900"
Ledus.S4	AUGUSTUS	stop_codon	13587464	13587466	.	+	0	transcript_id "Ledus.S4G179900.t1"; gene_id "Ledus.S4G179900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11630.t1 is derived from g5248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5683772	5686097	.	-	.	Ledus.S4G078600
Ledus.S4	AUGUSTUS	transcript	5683772	5686097	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	stop_codon	5683769	5683771	.	-	0	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	CDS	5683772	5684104	1	-	0	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	exon	5683772	5684104	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	intron	5684105	5684230	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	CDS	5684231	5684332	1	-	0	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	exon	5684231	5684332	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	intron	5684333	5684406	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	CDS	5684407	5684496	1	-	0	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	exon	5684407	5684496	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	intron	5684497	5684636	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	CDS	5684637	5684681	1	-	0	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	exon	5684637	5684681	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	intron	5684682	5684938	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	CDS	5684939	5685013	1	-	0	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	exon	5684939	5685013	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	intron	5685014	5685101	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	CDS	5685102	5685182	1	-	0	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	exon	5685102	5685182	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	intron	5685183	5685263	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	CDS	5685264	5686097	0.98	-	0	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	exon	5685264	5686097	.	-	.	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
Ledus.S4	AUGUSTUS	start_codon	5686095	5686097	.	-	0	transcript_id "Ledus.S4G078600.t1"; gene_id "Ledus.S4G078600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7281.t1 is derived from g11952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	733313	734163	.	-	.	Ledus.S5G005900
Ledus.S5	AUGUSTUS	transcript	733313	734163	.	-	.	transcript_id "Ledus.S5G005900.t1"; gene_id "Ledus.S5G005900"
Ledus.S5	AUGUSTUS	stop_codon	733310	733312	.	-	0	transcript_id "Ledus.S5G005900.t1"; gene_id "Ledus.S5G005900"
Ledus.S5	AUGUSTUS	CDS	733313	733654	1	-	0	transcript_id "Ledus.S5G005900.t1"; gene_id "Ledus.S5G005900"
Ledus.S5	AUGUSTUS	exon	733313	733654	.	-	.	transcript_id "Ledus.S5G005900.t1"; gene_id "Ledus.S5G005900"
Ledus.S5	AUGUSTUS	intron	733655	733837	.	-	.	transcript_id "Ledus.S5G005900.t1"; gene_id "Ledus.S5G005900"
Ledus.S5	AUGUSTUS	CDS	733838	733937	0.8	-	1	transcript_id "Ledus.S5G005900.t1"; gene_id "Ledus.S5G005900"
Ledus.S5	AUGUSTUS	exon	733838	733937	.	-	.	transcript_id "Ledus.S5G005900.t1"; gene_id "Ledus.S5G005900"
Ledus.S5	AUGUSTUS	intron	733938	734113	.	-	.	transcript_id "Ledus.S5G005900.t1"; gene_id "Ledus.S5G005900"
Ledus.S5	AUGUSTUS	CDS	734114	734163	0.49	-	0	transcript_id "Ledus.S5G005900.t1"; gene_id "Ledus.S5G005900"
Ledus.S5	AUGUSTUS	exon	734114	734163	.	-	.	transcript_id "Ledus.S5G005900.t1"; gene_id "Ledus.S5G005900"
Ledus.S5	AUGUSTUS	start_codon	734161	734163	.	-	0	transcript_id "Ledus.S5G005900.t1"; gene_id "Ledus.S5G005900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9310.t1 is derived from g10340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6000975	6001928	.	+	.	Ledus.S3G078700
Ledus.S3	AUGUSTUS	transcript	6000975	6001928	.	+	.	transcript_id "Ledus.S3G078700.t1"; gene_id "Ledus.S3G078700"
Ledus.S3	AUGUSTUS	start_codon	6000975	6000977	.	+	0	transcript_id "Ledus.S3G078700.t1"; gene_id "Ledus.S3G078700"
Ledus.S3	AUGUSTUS	CDS	6000975	6001928	0.99	+	0	transcript_id "Ledus.S3G078700.t1"; gene_id "Ledus.S3G078700"
Ledus.S3	AUGUSTUS	exon	6000975	6001928	.	+	.	transcript_id "Ledus.S3G078700.t1"; gene_id "Ledus.S3G078700"
Ledus.S3	AUGUSTUS	stop_codon	6001929	6001931	.	+	0	transcript_id "Ledus.S3G078700.t1"; gene_id "Ledus.S3G078700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg301.t1 is derived from g7162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1484583	1486202	.	-	.	Ledus.S2G018300
Ledus.S2	AUGUSTUS	transcript	1484583	1486202	.	-	.	transcript_id "Ledus.S2G018300.t1"; gene_id "Ledus.S2G018300"
Ledus.S2	AUGUSTUS	stop_codon	1484580	1484582	.	-	0	transcript_id "Ledus.S2G018300.t1"; gene_id "Ledus.S2G018300"
Ledus.S2	AUGUSTUS	CDS	1484583	1486202	0.71	-	0	transcript_id "Ledus.S2G018300.t1"; gene_id "Ledus.S2G018300"
Ledus.S2	AUGUSTUS	exon	1484583	1486202	.	-	.	transcript_id "Ledus.S2G018300.t1"; gene_id "Ledus.S2G018300"
Ledus.S2	AUGUSTUS	start_codon	1486200	1486202	.	-	0	transcript_id "Ledus.S2G018300.t1"; gene_id "Ledus.S2G018300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7133.t1 is derived from g6664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1708331	1709619	.	-	.	Ledus.C7G019400
Ledus.C7	AUGUSTUS	transcript	1708331	1709619	.	-	.	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	stop_codon	1708328	1708330	.	-	0	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	CDS	1708331	1708641	1	-	2	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	exon	1708331	1708641	.	-	.	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	intron	1708642	1708723	.	-	.	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	CDS	1708724	1708770	1	-	1	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	exon	1708724	1708770	.	-	.	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	intron	1708771	1708857	.	-	.	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	CDS	1708858	1708973	1	-	0	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	exon	1708858	1708973	.	-	.	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	intron	1708974	1709043	.	-	.	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	CDS	1709044	1709203	0.84	-	1	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	exon	1709044	1709203	.	-	.	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	intron	1709204	1709322	.	-	.	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	CDS	1709323	1709371	0.71	-	2	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	exon	1709323	1709371	.	-	.	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	intron	1709372	1709570	.	-	.	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	CDS	1709571	1709619	0.93	-	0	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	exon	1709571	1709619	.	-	.	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
Ledus.C7	AUGUSTUS	start_codon	1709617	1709619	.	-	0	transcript_id "Ledus.C7G019400.t1"; gene_id "Ledus.C7G019400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5012.t1 is derived from g2450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21120346	21128866	.	-	.	Ledus.S1G243300
Ledus.S1	AUGUSTUS	transcript	21120346	21128866	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	stop_codon	21120343	21120345	.	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21120346	21122761	1	-	1	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21120346	21122761	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21122762	21122860	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21122861	21123009	0.93	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21122861	21123009	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21123010	21123165	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21123166	21123237	0.95	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21123166	21123237	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21123238	21123318	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21123319	21123436	1	-	1	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21123319	21123436	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21123437	21123519	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21123520	21123581	1	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21123520	21123581	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21123582	21123666	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21123667	21123765	1	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21123667	21123765	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21123766	21123978	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21123979	21124083	1	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21123979	21124083	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21124084	21124216	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21124217	21124296	1	-	2	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21124217	21124296	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21124297	21124387	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21124388	21124460	0.56	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21124388	21124460	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21124461	21124568	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21124569	21124658	0.68	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21124569	21124658	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21124659	21124879	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21124880	21124942	1	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21124880	21124942	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21124943	21125041	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21125042	21125093	1	-	1	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21125042	21125093	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21125094	21125170	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21125171	21125271	1	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21125171	21125271	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21125272	21125408	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21125409	21125508	1	-	1	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21125409	21125508	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21125509	21125732	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21125733	21125796	1	-	2	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21125733	21125796	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21125797	21126132	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21126133	21126190	1	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21126133	21126190	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21126191	21126311	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21126312	21126398	0.99	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21126312	21126398	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21126399	21126551	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21126552	21126686	1	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21126552	21126686	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21126687	21126888	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21126889	21126993	1	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21126889	21126993	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21126994	21127080	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21127081	21127185	1	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21127081	21127185	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21127186	21127327	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21127328	21127561	1	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21127328	21127561	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21127562	21127742	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21127743	21127839	1	-	1	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21127743	21127839	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21127840	21127985	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21127986	21128128	0.96	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21127986	21128128	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21128129	21128261	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21128262	21128306	1	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21128262	21128306	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21128307	21128451	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21128452	21128544	1	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21128452	21128544	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21128545	21128639	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21128640	21128718	0.88	-	1	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21128640	21128718	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	intron	21128719	21128831	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	CDS	21128832	21128866	0.47	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	exon	21128832	21128866	.	-	.	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
Ledus.S1	AUGUSTUS	start_codon	21128864	21128866	.	-	0	transcript_id "Ledus.S1G243300.t1"; gene_id "Ledus.S1G243300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6769.t1 is derived from g4212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34020742	34021936	.	+	.	Ledus.S1G419000
Ledus.S1	AUGUSTUS	transcript	34020742	34021936	.	+	.	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	start_codon	34020742	34020744	.	+	0	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	CDS	34020742	34021068	1	+	0	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	exon	34020742	34021068	.	+	.	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	intron	34021069	34021142	.	+	.	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	CDS	34021143	34021278	1	+	0	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	exon	34021143	34021278	.	+	.	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	intron	34021279	34021373	.	+	.	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	CDS	34021374	34021498	1	+	2	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	exon	34021374	34021498	.	+	.	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	intron	34021499	34021575	.	+	.	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	CDS	34021576	34021722	1	+	0	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	exon	34021576	34021722	.	+	.	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	intron	34021723	34021804	.	+	.	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	CDS	34021805	34021936	1	+	0	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	exon	34021805	34021936	.	+	.	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
Ledus.S1	AUGUSTUS	stop_codon	34021937	34021939	.	+	0	transcript_id "Ledus.S1G419000.t1"; gene_id "Ledus.S1G419000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg861.t1 is derived from g7722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5720284	5721690	.	-	.	Ledus.S2G074300
Ledus.S2	AUGUSTUS	transcript	5720284	5721690	.	-	.	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	stop_codon	5720281	5720283	.	-	0	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	CDS	5720284	5720434	0.98	-	1	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	exon	5720284	5720434	.	-	.	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	intron	5720435	5720523	.	-	.	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	CDS	5720524	5720966	1	-	0	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	exon	5720524	5720966	.	-	.	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	intron	5720967	5721052	.	-	.	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	CDS	5721053	5721239	1	-	1	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	exon	5721053	5721239	.	-	.	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	intron	5721240	5721319	.	-	.	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	CDS	5721320	5721690	0.55	-	0	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	exon	5721320	5721690	.	-	.	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
Ledus.S2	AUGUSTUS	start_codon	5721688	5721690	.	-	0	transcript_id "Ledus.S2G074300.t1"; gene_id "Ledus.S2G074300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9803.t1 is derived from g10833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9955548	9956165	.	-	.	Ledus.S3G128000
Ledus.S3	AUGUSTUS	transcript	9955548	9956165	.	-	.	transcript_id "Ledus.S3G128000.t1"; gene_id "Ledus.S3G128000"
Ledus.S3	AUGUSTUS	stop_codon	9955545	9955547	.	-	0	transcript_id "Ledus.S3G128000.t1"; gene_id "Ledus.S3G128000"
Ledus.S3	AUGUSTUS	CDS	9955548	9955649	0.99	-	0	transcript_id "Ledus.S3G128000.t1"; gene_id "Ledus.S3G128000"
Ledus.S3	AUGUSTUS	exon	9955548	9955649	.	-	.	transcript_id "Ledus.S3G128000.t1"; gene_id "Ledus.S3G128000"
Ledus.S3	AUGUSTUS	intron	9955650	9955785	.	-	.	transcript_id "Ledus.S3G128000.t1"; gene_id "Ledus.S3G128000"
Ledus.S3	AUGUSTUS	CDS	9955786	9955853	1	-	2	transcript_id "Ledus.S3G128000.t1"; gene_id "Ledus.S3G128000"
Ledus.S3	AUGUSTUS	exon	9955786	9955853	.	-	.	transcript_id "Ledus.S3G128000.t1"; gene_id "Ledus.S3G128000"
Ledus.S3	AUGUSTUS	intron	9955854	9956077	.	-	.	transcript_id "Ledus.S3G128000.t1"; gene_id "Ledus.S3G128000"
Ledus.S3	AUGUSTUS	CDS	9956078	9956165	0.9	-	0	transcript_id "Ledus.S3G128000.t1"; gene_id "Ledus.S3G128000"
Ledus.S3	AUGUSTUS	exon	9956078	9956165	.	-	.	transcript_id "Ledus.S3G128000.t1"; gene_id "Ledus.S3G128000"
Ledus.S3	AUGUSTUS	start_codon	9956163	9956165	.	-	0	transcript_id "Ledus.S3G128000.t1"; gene_id "Ledus.S3G128000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10810.t1 is derived from g11842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17874296	17878381	.	+	.	Ledus.S3G228700
Ledus.S3	AUGUSTUS	transcript	17874296	17878381	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	start_codon	17874296	17874298	.	+	0	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	CDS	17874296	17874550	0.71	+	0	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	exon	17874296	17874550	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	intron	17874551	17875392	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	CDS	17875393	17875557	1	+	0	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	exon	17875393	17875557	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	intron	17875558	17875645	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	CDS	17875646	17875813	1	+	0	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	exon	17875646	17875813	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	intron	17875814	17875897	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	CDS	17875898	17875990	1	+	0	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	exon	17875898	17875990	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	intron	17875991	17876064	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	CDS	17876065	17876157	1	+	0	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	exon	17876065	17876157	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	intron	17876158	17876412	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	CDS	17876413	17876788	1	+	0	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	exon	17876413	17876788	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	intron	17876789	17876888	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	CDS	17876889	17877015	0.99	+	2	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	exon	17876889	17877015	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	intron	17877016	17877124	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	CDS	17877125	17877274	1	+	1	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	exon	17877125	17877274	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	intron	17877275	17877369	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	CDS	17877370	17877471	1	+	1	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	exon	17877370	17877471	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	intron	17877472	17877555	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	CDS	17877556	17877948	0.99	+	1	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	exon	17877556	17877948	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	intron	17877949	17878085	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	CDS	17878086	17878152	1	+	1	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	exon	17878086	17878152	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	intron	17878153	17878246	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	CDS	17878247	17878381	0.98	+	0	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	exon	17878247	17878381	.	+	.	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
Ledus.S3	AUGUSTUS	stop_codon	17878382	17878384	.	+	0	transcript_id "Ledus.S3G228700.t1"; gene_id "Ledus.S3G228700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4159.t1 is derived from g1595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15026335	15026646	.	-	.	Ledus.S1G158000
Ledus.S1	AUGUSTUS	transcript	15026335	15026646	.	-	.	transcript_id "Ledus.S1G158000.t1"; gene_id "Ledus.S1G158000"
Ledus.S1	AUGUSTUS	stop_codon	15026332	15026334	.	-	0	transcript_id "Ledus.S1G158000.t1"; gene_id "Ledus.S1G158000"
Ledus.S1	AUGUSTUS	CDS	15026335	15026646	0.89	-	0	transcript_id "Ledus.S1G158000.t1"; gene_id "Ledus.S1G158000"
Ledus.S1	AUGUSTUS	exon	15026335	15026646	.	-	.	transcript_id "Ledus.S1G158000.t1"; gene_id "Ledus.S1G158000"
Ledus.S1	AUGUSTUS	start_codon	15026644	15026646	.	-	0	transcript_id "Ledus.S1G158000.t1"; gene_id "Ledus.S1G158000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8893.t1 is derived from g9923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2880303	2881046	.	-	.	Ledus.S3G037000
Ledus.S3	AUGUSTUS	transcript	2880303	2881046	.	-	.	transcript_id "Ledus.S3G037000.t1"; gene_id "Ledus.S3G037000"
Ledus.S3	AUGUSTUS	stop_codon	2880300	2880302	.	-	0	transcript_id "Ledus.S3G037000.t1"; gene_id "Ledus.S3G037000"
Ledus.S3	AUGUSTUS	CDS	2880303	2881046	0.87	-	0	transcript_id "Ledus.S3G037000.t1"; gene_id "Ledus.S3G037000"
Ledus.S3	AUGUSTUS	exon	2880303	2881046	.	-	.	transcript_id "Ledus.S3G037000.t1"; gene_id "Ledus.S3G037000"
Ledus.S3	AUGUSTUS	start_codon	2881044	2881046	.	-	0	transcript_id "Ledus.S3G037000.t1"; gene_id "Ledus.S3G037000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9563.t1 is derived from g10593.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7817104	7819519	.	-	.	Ledus.S3G104000
Ledus.S3	AUGUSTUS	transcript	7817104	7819519	.	-	.	transcript_id "Ledus.S3G104000.t1"; gene_id "Ledus.S3G104000"
Ledus.S3	AUGUSTUS	stop_codon	7817101	7817103	.	-	0	transcript_id "Ledus.S3G104000.t1"; gene_id "Ledus.S3G104000"
Ledus.S3	AUGUSTUS	CDS	7817104	7817490	0.99	-	0	transcript_id "Ledus.S3G104000.t1"; gene_id "Ledus.S3G104000"
Ledus.S3	AUGUSTUS	exon	7817104	7817490	.	-	.	transcript_id "Ledus.S3G104000.t1"; gene_id "Ledus.S3G104000"
Ledus.S3	AUGUSTUS	intron	7817491	7817680	.	-	.	transcript_id "Ledus.S3G104000.t1"; gene_id "Ledus.S3G104000"
Ledus.S3	AUGUSTUS	CDS	7817681	7819519	0.5	-	0	transcript_id "Ledus.S3G104000.t1"; gene_id "Ledus.S3G104000"
Ledus.S3	AUGUSTUS	exon	7817681	7819519	.	-	.	transcript_id "Ledus.S3G104000.t1"; gene_id "Ledus.S3G104000"
Ledus.S3	AUGUSTUS	start_codon	7819517	7819519	.	-	0	transcript_id "Ledus.S3G104000.t1"; gene_id "Ledus.S3G104000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8915.t1 is derived from g9945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3088426	3089021	.	+	.	Ledus.S3G039200
Ledus.S3	AUGUSTUS	transcript	3088426	3089021	.	+	.	transcript_id "Ledus.S3G039200.t1"; gene_id "Ledus.S3G039200"
Ledus.S3	AUGUSTUS	start_codon	3088426	3088428	.	+	0	transcript_id "Ledus.S3G039200.t1"; gene_id "Ledus.S3G039200"
Ledus.S3	AUGUSTUS	CDS	3088426	3088636	0.89	+	0	transcript_id "Ledus.S3G039200.t1"; gene_id "Ledus.S3G039200"
Ledus.S3	AUGUSTUS	exon	3088426	3088636	.	+	.	transcript_id "Ledus.S3G039200.t1"; gene_id "Ledus.S3G039200"
Ledus.S3	AUGUSTUS	intron	3088637	3088752	.	+	.	transcript_id "Ledus.S3G039200.t1"; gene_id "Ledus.S3G039200"
Ledus.S3	AUGUSTUS	CDS	3088753	3089021	1	+	2	transcript_id "Ledus.S3G039200.t1"; gene_id "Ledus.S3G039200"
Ledus.S3	AUGUSTUS	exon	3088753	3089021	.	+	.	transcript_id "Ledus.S3G039200.t1"; gene_id "Ledus.S3G039200"
Ledus.S3	AUGUSTUS	stop_codon	3089022	3089024	.	+	0	transcript_id "Ledus.S3G039200.t1"; gene_id "Ledus.S3G039200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11037.t1 is derived from g4655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1347988	1350183	.	-	.	Ledus.S4G019300
Ledus.S4	AUGUSTUS	transcript	1347988	1350183	.	-	.	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	stop_codon	1347985	1347987	.	-	0	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	CDS	1347988	1348218	0.96	-	0	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	exon	1347988	1348218	.	-	.	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	intron	1348219	1348337	.	-	.	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	CDS	1348338	1348759	0.99	-	2	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	exon	1348338	1348759	.	-	.	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	intron	1348760	1348873	.	-	.	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	CDS	1348874	1349066	1	-	0	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	exon	1348874	1349066	.	-	.	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	intron	1349067	1349272	.	-	.	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	CDS	1349273	1349371	1	-	0	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	exon	1349273	1349371	.	-	.	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	intron	1349372	1349520	.	-	.	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	CDS	1349521	1349598	1	-	0	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	exon	1349521	1349598	.	-	.	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	intron	1349599	1349745	.	-	.	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	CDS	1349746	1350183	1	-	0	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	exon	1349746	1350183	.	-	.	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
Ledus.S4	AUGUSTUS	start_codon	1350181	1350183	.	-	0	transcript_id "Ledus.S4G019300.t1"; gene_id "Ledus.S4G019300"
# This transcript jg123.t2 is derived from g6984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg124.t1 is derived from g6985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	56675	58079	.	+	.	Ledus.S2G000600
Ledus.S2	AUGUSTUS	transcript	56675	58079	.	+	.	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	start_codon	56675	56677	.	+	0	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	CDS	56675	56692	0.64	+	0	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	exon	56675	56692	.	+	.	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	intron	56693	56827	.	+	.	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	CDS	56828	56978	0.72	+	0	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	exon	56828	56978	.	+	.	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	intron	56979	57056	.	+	.	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	CDS	57057	57190	0.42	+	2	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	exon	57057	57190	.	+	.	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	intron	57191	57337	.	+	.	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	CDS	57338	57390	0.54	+	0	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	exon	57338	57390	.	+	.	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	intron	57391	57584	.	+	.	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	CDS	57585	57676	1	+	1	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	exon	57585	57676	.	+	.	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	intron	57677	58056	.	+	.	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	CDS	58057	58079	1	+	2	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	exon	58057	58079	.	+	.	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
Ledus.S2	AUGUSTUS	stop_codon	58080	58082	.	+	0	transcript_id "Ledus.S2G000600.t1"; gene_id "Ledus.S2G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg535.t1 is derived from g7396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3078742	3081219	.	+	.	Ledus.S2G041700
Ledus.S2	AUGUSTUS	transcript	3078742	3081219	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	start_codon	3078742	3078744	.	+	0	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	CDS	3078742	3078891	0.55	+	0	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	exon	3078742	3078891	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	intron	3078892	3078979	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	CDS	3078980	3079221	1	+	0	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	exon	3078980	3079221	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	intron	3079222	3079310	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	CDS	3079311	3079748	0.81	+	1	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	exon	3079311	3079748	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	intron	3079749	3079856	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	CDS	3079857	3080109	0.75	+	1	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	exon	3079857	3080109	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	intron	3080110	3080189	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	CDS	3080190	3080432	1	+	0	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	exon	3080190	3080432	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	intron	3080433	3080514	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	CDS	3080515	3080650	1	+	0	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	exon	3080515	3080650	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	intron	3080651	3080767	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	CDS	3080768	3080859	1	+	2	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	exon	3080768	3080859	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	intron	3080860	3080954	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	CDS	3080955	3081023	1	+	0	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	exon	3080955	3081023	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	intron	3081024	3081117	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	CDS	3081118	3081219	1	+	0	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	exon	3081118	3081219	.	+	.	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
Ledus.S2	AUGUSTUS	stop_codon	3081220	3081222	.	+	0	transcript_id "Ledus.S2G041700.t1"; gene_id "Ledus.S2G041700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8000.t1 is derived from g12671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8413729	8415059	.	-	.	Ledus.S5G077800
Ledus.S5	AUGUSTUS	transcript	8413729	8415059	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	stop_codon	8413726	8413728	.	-	0	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	CDS	8413729	8413744	0.76	-	1	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	exon	8413729	8413744	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	intron	8413745	8413880	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	CDS	8413881	8413896	0.67	-	2	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	exon	8413881	8413896	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	intron	8413897	8413969	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	CDS	8413970	8414004	0.53	-	1	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	exon	8413970	8414004	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	intron	8414005	8414154	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	CDS	8414155	8414273	1	-	0	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	exon	8414155	8414273	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	intron	8414274	8414451	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	CDS	8414452	8414571	1	-	0	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	exon	8414452	8414571	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	intron	8414572	8414727	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	CDS	8414728	8414798	1	-	2	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	exon	8414728	8414798	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	intron	8414799	8414917	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	CDS	8414918	8415059	0.61	-	0	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	exon	8414918	8415059	.	-	.	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
Ledus.S5	AUGUSTUS	start_codon	8415057	8415059	.	-	0	transcript_id "Ledus.S5G077800.t1"; gene_id "Ledus.S5G077800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12191.t1 is derived from g5810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10232570	10233857	.	+	.	Ledus.S4G134700
Ledus.S4	AUGUSTUS	transcript	10232570	10233857	.	+	.	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	start_codon	10232570	10232572	.	+	0	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	CDS	10232570	10232833	1	+	0	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	exon	10232570	10232833	.	+	.	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	intron	10232834	10232914	.	+	.	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	CDS	10232915	10232959	1	+	0	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	exon	10232915	10232959	.	+	.	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	intron	10232960	10233050	.	+	.	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	CDS	10233051	10233164	1	+	0	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	exon	10233051	10233164	.	+	.	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	intron	10233165	10233341	.	+	.	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	CDS	10233342	10233422	1	+	0	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	exon	10233342	10233422	.	+	.	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	intron	10233423	10233504	.	+	.	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	CDS	10233505	10233672	1	+	0	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	exon	10233505	10233672	.	+	.	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	intron	10233673	10233770	.	+	.	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	CDS	10233771	10233857	0.34	+	0	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	exon	10233771	10233857	.	+	.	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
Ledus.S4	AUGUSTUS	stop_codon	10233858	10233860	.	+	0	transcript_id "Ledus.S4G134700.t1"; gene_id "Ledus.S4G134700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg976.t1 is derived from g7837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6437270	6437952	.	+	.	Ledus.S2G085800
Ledus.S2	AUGUSTUS	transcript	6437270	6437952	.	+	.	transcript_id "Ledus.S2G085800.t1"; gene_id "Ledus.S2G085800"
Ledus.S2	AUGUSTUS	start_codon	6437270	6437272	.	+	0	transcript_id "Ledus.S2G085800.t1"; gene_id "Ledus.S2G085800"
Ledus.S2	AUGUSTUS	CDS	6437270	6437521	0.92	+	0	transcript_id "Ledus.S2G085800.t1"; gene_id "Ledus.S2G085800"
Ledus.S2	AUGUSTUS	exon	6437270	6437521	.	+	.	transcript_id "Ledus.S2G085800.t1"; gene_id "Ledus.S2G085800"
Ledus.S2	AUGUSTUS	intron	6437522	6437589	.	+	.	transcript_id "Ledus.S2G085800.t1"; gene_id "Ledus.S2G085800"
Ledus.S2	AUGUSTUS	CDS	6437590	6437952	0.78	+	0	transcript_id "Ledus.S2G085800.t1"; gene_id "Ledus.S2G085800"
Ledus.S2	AUGUSTUS	exon	6437590	6437952	.	+	.	transcript_id "Ledus.S2G085800.t1"; gene_id "Ledus.S2G085800"
Ledus.S2	AUGUSTUS	stop_codon	6437953	6437955	.	+	0	transcript_id "Ledus.S2G085800.t1"; gene_id "Ledus.S2G085800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8290.t1 is derived from g12961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10506951	10508571	.	+	.	Ledus.S5G106800
Ledus.S5	AUGUSTUS	transcript	10506951	10508571	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	start_codon	10506951	10506953	.	+	0	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	CDS	10506951	10507150	0.97	+	0	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	exon	10506951	10507150	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	intron	10507151	10507228	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	CDS	10507229	10507331	1	+	1	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	exon	10507229	10507331	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	intron	10507332	10507421	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	CDS	10507422	10507616	1	+	0	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	exon	10507422	10507616	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	intron	10507617	10507728	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	CDS	10507729	10507815	1	+	0	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	exon	10507729	10507815	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	intron	10507816	10507898	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	CDS	10507899	10507949	1	+	0	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	exon	10507899	10507949	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	intron	10507950	10508048	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	CDS	10508049	10508228	1	+	0	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	exon	10508049	10508228	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	intron	10508229	10508346	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	CDS	10508347	10508571	0.82	+	0	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	exon	10508347	10508571	.	+	.	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
Ledus.S5	AUGUSTUS	stop_codon	10508572	10508574	.	+	0	transcript_id "Ledus.S5G106800.t1"; gene_id "Ledus.S5G106800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5959.t1 is derived from g3402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28048597	28049688	.	-	.	Ledus.S1G338000
Ledus.S1	AUGUSTUS	transcript	28048597	28049688	.	-	.	transcript_id "Ledus.S1G338000.t1"; gene_id "Ledus.S1G338000"
Ledus.S1	AUGUSTUS	stop_codon	28048594	28048596	.	-	0	transcript_id "Ledus.S1G338000.t1"; gene_id "Ledus.S1G338000"
Ledus.S1	AUGUSTUS	CDS	28048597	28049688	0.99	-	0	transcript_id "Ledus.S1G338000.t1"; gene_id "Ledus.S1G338000"
Ledus.S1	AUGUSTUS	exon	28048597	28049688	.	-	.	transcript_id "Ledus.S1G338000.t1"; gene_id "Ledus.S1G338000"
Ledus.S1	AUGUSTUS	start_codon	28049686	28049688	.	-	0	transcript_id "Ledus.S1G338000.t1"; gene_id "Ledus.S1G338000"
# This transcript jg968.t2 is derived from g7829.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg969.t1 is derived from g7830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6381753	6384419	.	+	.	Ledus.S2G085100
Ledus.S2	AUGUSTUS	transcript	6381753	6384419	.	+	.	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	start_codon	6381753	6381755	.	+	0	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	CDS	6381753	6382427	0.88	+	0	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	exon	6381753	6382427	.	+	.	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	intron	6382428	6382553	.	+	.	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	CDS	6382554	6382757	0.93	+	0	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	exon	6382554	6382757	.	+	.	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	intron	6382758	6382919	.	+	.	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	CDS	6382920	6383105	1	+	0	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	exon	6382920	6383105	.	+	.	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	intron	6383106	6383205	.	+	.	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	CDS	6383206	6383496	1	+	0	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	exon	6383206	6383496	.	+	.	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	intron	6383497	6383579	.	+	.	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	CDS	6383580	6384419	1	+	0	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	exon	6383580	6384419	.	+	.	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
Ledus.S2	AUGUSTUS	stop_codon	6384420	6384422	.	+	0	transcript_id "Ledus.S2G085100.t1"; gene_id "Ledus.S2G085100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10386.t1 is derived from g11416.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14666535	14666732	.	+	.	Ledus.S3G186300
Ledus.S3	AUGUSTUS	transcript	14666535	14666732	.	+	.	transcript_id "Ledus.S3G186300.t1"; gene_id "Ledus.S3G186300"
Ledus.S3	AUGUSTUS	start_codon	14666535	14666537	.	+	0	transcript_id "Ledus.S3G186300.t1"; gene_id "Ledus.S3G186300"
Ledus.S3	AUGUSTUS	CDS	14666535	14666732	0.86	+	0	transcript_id "Ledus.S3G186300.t1"; gene_id "Ledus.S3G186300"
Ledus.S3	AUGUSTUS	exon	14666535	14666732	.	+	.	transcript_id "Ledus.S3G186300.t1"; gene_id "Ledus.S3G186300"
Ledus.S3	AUGUSTUS	stop_codon	14666733	14666735	.	+	0	transcript_id "Ledus.S3G186300.t1"; gene_id "Ledus.S3G186300"
# This transcript jg7141.t2 is derived from g6672.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7142.t1 is derived from g6673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1735496	1738665	.	-	.	Ledus.C7G020300
Ledus.C7	AUGUSTUS	transcript	1735496	1738665	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	stop_codon	1735493	1735495	.	-	0	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	CDS	1735496	1735882	1	-	0	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	exon	1735496	1735882	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	intron	1735883	1735998	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	CDS	1735999	1736115	1	-	0	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	exon	1735999	1736115	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	intron	1736116	1736233	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	CDS	1736234	1736971	1	-	0	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	exon	1736234	1736971	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	intron	1736972	1737063	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	CDS	1737064	1737570	1	-	0	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	exon	1737064	1737570	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	intron	1737571	1737687	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	CDS	1737688	1737769	1	-	1	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	exon	1737688	1737769	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	intron	1737770	1738080	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	CDS	1738081	1738394	1	-	0	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	exon	1738081	1738394	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	intron	1738395	1738521	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	CDS	1738522	1738665	0.68	-	0	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	exon	1738522	1738665	.	-	.	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
Ledus.C7	AUGUSTUS	start_codon	1738663	1738665	.	-	0	transcript_id "Ledus.C7G020300.t1"; gene_id "Ledus.C7G020300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6209.t1 is derived from g3652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29653772	29658568	.	-	.	Ledus.S1G363000
Ledus.S1	AUGUSTUS	transcript	29653772	29658568	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	stop_codon	29653769	29653771	.	-	0	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29653772	29654035	0.75	-	0	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29653772	29654035	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29654036	29654107	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29654108	29654257	1	-	0	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29654108	29654257	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29654258	29654337	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29654338	29654399	1	-	2	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29654338	29654399	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29654400	29654486	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29654487	29654578	0.94	-	1	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29654487	29654578	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29654579	29654698	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29654699	29655937	0.62	-	1	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29654699	29655937	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29655938	29656182	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29656183	29656271	1	-	0	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29656183	29656271	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29656272	29656359	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29656360	29656446	1	-	0	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29656360	29656446	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29656447	29656584	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29656585	29656644	1	-	0	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29656585	29656644	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29656645	29656726	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29656727	29656774	1	-	0	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29656727	29656774	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29656775	29656941	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29656942	29657115	1	-	0	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29656942	29657115	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29657116	29657243	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29657244	29657482	1	-	2	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29657244	29657482	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29657483	29657594	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29657595	29657679	1	-	0	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29657595	29657679	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29657680	29657789	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29657790	29657897	1	-	0	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29657790	29657897	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29657898	29658048	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29658049	29658229	1	-	1	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29658049	29658229	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	intron	29658230	29658392	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	CDS	29658393	29658568	0.9	-	0	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	exon	29658393	29658568	.	-	.	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
Ledus.S1	AUGUSTUS	start_codon	29658566	29658568	.	-	0	transcript_id "Ledus.S1G363000.t1"; gene_id "Ledus.S1G363000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11177.t1 is derived from g4795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2403004	2404595	.	+	.	Ledus.S4G033300
Ledus.S4	AUGUSTUS	transcript	2403004	2404595	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	start_codon	2403004	2403006	.	+	0	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	CDS	2403004	2403114	0.99	+	0	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	exon	2403004	2403114	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	intron	2403115	2403319	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	CDS	2403320	2403358	1	+	0	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	exon	2403320	2403358	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	intron	2403359	2403455	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	CDS	2403456	2403686	1	+	0	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	exon	2403456	2403686	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	intron	2403687	2403825	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	CDS	2403826	2403891	0.57	+	0	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	exon	2403826	2403891	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	intron	2403892	2403967	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	CDS	2403968	2404027	0.67	+	0	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	exon	2403968	2404027	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	intron	2404028	2404122	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	CDS	2404123	2404174	1	+	0	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	exon	2404123	2404174	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	intron	2404175	2404446	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	CDS	2404447	2404595	0.95	+	2	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	exon	2404447	2404595	.	+	.	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
Ledus.S4	AUGUSTUS	stop_codon	2404596	2404598	.	+	0	transcript_id "Ledus.S4G033300.t1"; gene_id "Ledus.S4G033300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2525.t1 is derived from g9388.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18587402	18589663	.	+	.	Ledus.S2G240700
Ledus.S2	AUGUSTUS	transcript	18587402	18589663	.	+	.	transcript_id "Ledus.S2G240700.t1"; gene_id "Ledus.S2G240700"
Ledus.S2	AUGUSTUS	start_codon	18587402	18587404	.	+	0	transcript_id "Ledus.S2G240700.t1"; gene_id "Ledus.S2G240700"
Ledus.S2	AUGUSTUS	CDS	18587402	18589663	0.88	+	0	transcript_id "Ledus.S2G240700.t1"; gene_id "Ledus.S2G240700"
Ledus.S2	AUGUSTUS	exon	18587402	18589663	.	+	.	transcript_id "Ledus.S2G240700.t1"; gene_id "Ledus.S2G240700"
Ledus.S2	AUGUSTUS	stop_codon	18589664	18589666	.	+	0	transcript_id "Ledus.S2G240700.t1"; gene_id "Ledus.S2G240700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12970.t1 is derived from g6780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1361065	1361636	.	+	.	Ledus.S6G003200
Ledus.S6	AUGUSTUS	transcript	1361065	1361636	.	+	.	transcript_id "Ledus.S6G003200.t1"; gene_id "Ledus.S6G003200"
Ledus.S6	AUGUSTUS	start_codon	1361065	1361067	.	+	0	transcript_id "Ledus.S6G003200.t1"; gene_id "Ledus.S6G003200"
Ledus.S6	AUGUSTUS	CDS	1361065	1361333	0.78	+	0	transcript_id "Ledus.S6G003200.t1"; gene_id "Ledus.S6G003200"
Ledus.S6	AUGUSTUS	exon	1361065	1361333	.	+	.	transcript_id "Ledus.S6G003200.t1"; gene_id "Ledus.S6G003200"
Ledus.S6	AUGUSTUS	intron	1361334	1361626	.	+	.	transcript_id "Ledus.S6G003200.t1"; gene_id "Ledus.S6G003200"
Ledus.S6	AUGUSTUS	CDS	1361627	1361636	0.41	+	1	transcript_id "Ledus.S6G003200.t1"; gene_id "Ledus.S6G003200"
Ledus.S6	AUGUSTUS	exon	1361627	1361636	.	+	.	transcript_id "Ledus.S6G003200.t1"; gene_id "Ledus.S6G003200"
Ledus.S6	AUGUSTUS	stop_codon	1361637	1361639	.	+	0	transcript_id "Ledus.S6G003200.t1"; gene_id "Ledus.S6G003200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2914.t1 is derived from g349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4548658	4549457	.	-	.	Ledus.S1G033500
Ledus.S1	AUGUSTUS	transcript	4548658	4549457	.	-	.	transcript_id "Ledus.S1G033500.t1"; gene_id "Ledus.S1G033500"
Ledus.S1	AUGUSTUS	stop_codon	4548655	4548657	.	-	0	transcript_id "Ledus.S1G033500.t1"; gene_id "Ledus.S1G033500"
Ledus.S1	AUGUSTUS	CDS	4548658	4548828	0.98	-	0	transcript_id "Ledus.S1G033500.t1"; gene_id "Ledus.S1G033500"
Ledus.S1	AUGUSTUS	exon	4548658	4548828	.	-	.	transcript_id "Ledus.S1G033500.t1"; gene_id "Ledus.S1G033500"
Ledus.S1	AUGUSTUS	intron	4548829	4549055	.	-	.	transcript_id "Ledus.S1G033500.t1"; gene_id "Ledus.S1G033500"
Ledus.S1	AUGUSTUS	CDS	4549056	4549457	0.73	-	0	transcript_id "Ledus.S1G033500.t1"; gene_id "Ledus.S1G033500"
Ledus.S1	AUGUSTUS	exon	4549056	4549457	.	-	.	transcript_id "Ledus.S1G033500.t1"; gene_id "Ledus.S1G033500"
Ledus.S1	AUGUSTUS	start_codon	4549455	4549457	.	-	0	transcript_id "Ledus.S1G033500.t1"; gene_id "Ledus.S1G033500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10635.t1 is derived from g11665.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16724176	16725237	.	+	.	Ledus.S3G211200
Ledus.S3	AUGUSTUS	transcript	16724176	16725237	.	+	.	transcript_id "Ledus.S3G211200.t1"; gene_id "Ledus.S3G211200"
Ledus.S3	AUGUSTUS	start_codon	16724176	16724178	.	+	0	transcript_id "Ledus.S3G211200.t1"; gene_id "Ledus.S3G211200"
Ledus.S3	AUGUSTUS	CDS	16724176	16724628	1	+	0	transcript_id "Ledus.S3G211200.t1"; gene_id "Ledus.S3G211200"
Ledus.S3	AUGUSTUS	exon	16724176	16724628	.	+	.	transcript_id "Ledus.S3G211200.t1"; gene_id "Ledus.S3G211200"
Ledus.S3	AUGUSTUS	intron	16724629	16724712	.	+	.	transcript_id "Ledus.S3G211200.t1"; gene_id "Ledus.S3G211200"
Ledus.S3	AUGUSTUS	CDS	16724713	16725237	0.87	+	0	transcript_id "Ledus.S3G211200.t1"; gene_id "Ledus.S3G211200"
Ledus.S3	AUGUSTUS	exon	16724713	16725237	.	+	.	transcript_id "Ledus.S3G211200.t1"; gene_id "Ledus.S3G211200"
Ledus.S3	AUGUSTUS	stop_codon	16725238	16725240	.	+	0	transcript_id "Ledus.S3G211200.t1"; gene_id "Ledus.S3G211200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3416.t1 is derived from g851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8163386	8165028	.	-	.	Ledus.S1G083700
Ledus.S1	AUGUSTUS	transcript	8163386	8165028	.	-	.	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	stop_codon	8163383	8163385	.	-	0	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	CDS	8163386	8163501	0.67	-	2	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	exon	8163386	8163501	.	-	.	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	intron	8163502	8163618	.	-	.	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	CDS	8163619	8164043	1	-	1	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	exon	8163619	8164043	.	-	.	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	intron	8164044	8164143	.	-	.	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	CDS	8164144	8164337	1	-	0	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	exon	8164144	8164337	.	-	.	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	intron	8164338	8164758	.	-	.	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	CDS	8164759	8165028	0.94	-	0	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	exon	8164759	8165028	.	-	.	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
Ledus.S1	AUGUSTUS	start_codon	8165026	8165028	.	-	0	transcript_id "Ledus.S1G083700.t1"; gene_id "Ledus.S1G083700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8859.t1 is derived from g9889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2332440	2335105	.	-	.	Ledus.S3G033600
Ledus.S3	AUGUSTUS	transcript	2332440	2335105	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	stop_codon	2332437	2332439	.	-	0	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	CDS	2332440	2332496	0.99	-	0	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	exon	2332440	2332496	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	intron	2332497	2332621	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	CDS	2332622	2332676	1	-	1	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	exon	2332622	2332676	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	intron	2332677	2332762	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	CDS	2332763	2332859	1	-	2	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	exon	2332763	2332859	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	intron	2332860	2333038	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	CDS	2333039	2333783	0.98	-	0	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	exon	2333039	2333783	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	intron	2333784	2333898	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	CDS	2333899	2334242	1	-	2	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	exon	2333899	2334242	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	intron	2334243	2334407	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	CDS	2334408	2334503	1	-	2	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	exon	2334408	2334503	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	intron	2334504	2334588	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	CDS	2334589	2335105	1	-	0	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	exon	2334589	2335105	.	-	.	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
Ledus.S3	AUGUSTUS	start_codon	2335103	2335105	.	-	0	transcript_id "Ledus.S3G033600.t1"; gene_id "Ledus.S3G033600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11344.t1 is derived from g4962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3704441	3705882	.	-	.	Ledus.S4G050000
Ledus.S4	AUGUSTUS	transcript	3704441	3705882	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	stop_codon	3704438	3704440	.	-	0	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	CDS	3704441	3704522	1	-	1	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	exon	3704441	3704522	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	intron	3704523	3704619	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	CDS	3704620	3704713	1	-	2	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	exon	3704620	3704713	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	intron	3704714	3704791	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	CDS	3704792	3704865	1	-	1	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	exon	3704792	3704865	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	intron	3704866	3704952	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	CDS	3704953	3705025	1	-	2	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	exon	3704953	3705025	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	intron	3705026	3705112	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	CDS	3705113	3705188	1	-	0	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	exon	3705113	3705188	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	intron	3705189	3705267	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	CDS	3705268	3705351	1	-	0	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	exon	3705268	3705351	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	intron	3705352	3705427	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	CDS	3705428	3705510	1	-	2	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	exon	3705428	3705510	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	intron	3705511	3705586	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	CDS	3705587	3705706	1	-	2	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	exon	3705587	3705706	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	intron	3705707	3705794	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	CDS	3705795	3705882	0.64	-	0	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	exon	3705795	3705882	.	-	.	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
Ledus.S4	AUGUSTUS	start_codon	3705880	3705882	.	-	0	transcript_id "Ledus.S4G050000.t1"; gene_id "Ledus.S4G050000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7008.t1 is derived from g6539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	780066	781400	.	+	.	Ledus.C7G006900
Ledus.C7	AUGUSTUS	transcript	780066	781400	.	+	.	transcript_id "Ledus.C7G006900.t1"; gene_id "Ledus.C7G006900"
Ledus.C7	AUGUSTUS	start_codon	780066	780068	.	+	0	transcript_id "Ledus.C7G006900.t1"; gene_id "Ledus.C7G006900"
Ledus.C7	AUGUSTUS	CDS	780066	781400	0.9	+	0	transcript_id "Ledus.C7G006900.t1"; gene_id "Ledus.C7G006900"
Ledus.C7	AUGUSTUS	exon	780066	781400	.	+	.	transcript_id "Ledus.C7G006900.t1"; gene_id "Ledus.C7G006900"
Ledus.C7	AUGUSTUS	stop_codon	781401	781403	.	+	0	transcript_id "Ledus.C7G006900.t1"; gene_id "Ledus.C7G006900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4300.t1 is derived from g1736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16112154	16114248	.	-	.	Ledus.S1G172100
Ledus.S1	AUGUSTUS	transcript	16112154	16114248	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	stop_codon	16112151	16112153	.	-	0	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	CDS	16112154	16112633	1	-	0	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	exon	16112154	16112633	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	intron	16112634	16112737	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	CDS	16112738	16112846	1	-	1	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	exon	16112738	16112846	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	intron	16112847	16112916	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	CDS	16112917	16112975	0.95	-	0	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	exon	16112917	16112975	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	intron	16112976	16113078	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	CDS	16113079	16113188	0.98	-	2	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	exon	16113079	16113188	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	intron	16113189	16113278	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	CDS	16113279	16113435	1	-	0	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	exon	16113279	16113435	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	intron	16113436	16113518	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	CDS	16113519	16113578	1	-	0	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	exon	16113519	16113578	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	intron	16113579	16113664	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	CDS	16113665	16113793	1	-	0	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	exon	16113665	16113793	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	intron	16113794	16113879	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	CDS	16113880	16113927	1	-	0	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	exon	16113880	16113927	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	intron	16113928	16114122	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	CDS	16114123	16114248	0.68	-	0	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	exon	16114123	16114248	.	-	.	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
Ledus.S1	AUGUSTUS	start_codon	16114246	16114248	.	-	0	transcript_id "Ledus.S1G172100.t1"; gene_id "Ledus.S1G172100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg12161.t1 is derived from g5780.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10050868	10055237	.	-	.	Ledus.S4G131700
Ledus.S4	AUGUSTUS	transcript	10050868	10055237	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	stop_codon	10050865	10050867	.	-	0	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10050868	10051019	1	-	2	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10050868	10051019	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051020	10051101	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051102	10051227	1	-	2	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051102	10051227	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051228	10051303	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051304	10051427	1	-	0	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051304	10051427	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051428	10051511	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051512	10051559	1	-	0	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051512	10051559	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051560	10051655	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051656	10051691	1	-	0	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051656	10051691	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051692	10051767	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051768	10051867	1	-	1	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051768	10051867	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051868	10051983	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051984	10052099	1	-	0	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051984	10052099	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10052100	10052195	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10052196	10052233	1	-	2	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10052196	10052233	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10052234	10052349	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10052350	10052495	0.97	-	1	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10052350	10052495	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10052496	10052597	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10052598	10052955	0.93	-	2	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10052598	10052955	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10052956	10053145	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10053146	10053228	0.93	-	1	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10053146	10053228	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10053229	10053412	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10053413	10053440	0.92	-	2	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10053413	10053440	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10053441	10053538	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10053539	10053617	0.89	-	0	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10053539	10053617	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10053618	10054533	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10054534	10055087	0.93	-	2	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10054534	10055087	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10055088	10055221	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10055222	10055237	0.88	-	0	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10055222	10055237	.	-	.	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	start_codon	10055235	10055237	.	-	0	transcript_id "Ledus.S4G131700.t1"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	transcript	10050868	10055237	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	stop_codon	10050865	10050867	.	-	0	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10050868	10051019	1	-	2	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10050868	10051019	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051020	10051101	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051102	10051227	1	-	2	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051102	10051227	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051228	10051303	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051304	10051427	1	-	0	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051304	10051427	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051428	10051511	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051512	10051559	1	-	0	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051512	10051559	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051560	10051655	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051656	10051691	1	-	0	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051656	10051691	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051692	10051767	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051768	10051867	1	-	1	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051768	10051867	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051868	10051983	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051984	10052099	1	-	0	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051984	10052099	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10052100	10052195	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10052196	10052233	1	-	2	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10052196	10052233	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10052234	10052349	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10052350	10052495	0.98	-	1	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10052350	10052495	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10052496	10052597	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10052598	10052955	0.82	-	2	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10052598	10052955	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10052956	10053167	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10053168	10053228	0.82	-	0	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10053168	10053228	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10053229	10053412	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10053413	10053502	0.95	-	0	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10053413	10053502	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10053503	10054533	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10054534	10055087	0.93	-	2	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10054534	10055087	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10055088	10055221	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10055222	10055237	0.88	-	0	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10055222	10055237	.	-	.	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	start_codon	10055235	10055237	.	-	0	transcript_id "Ledus.S4G131700.t2"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	transcript	10050868	10055237	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	stop_codon	10050865	10050867	.	-	0	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10050868	10051019	1	-	2	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10050868	10051019	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051020	10051101	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051102	10051227	1	-	2	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051102	10051227	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051228	10051303	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051304	10051427	1	-	0	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051304	10051427	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051428	10051511	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051512	10051559	1	-	0	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051512	10051559	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051560	10051655	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051656	10051691	1	-	0	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051656	10051691	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051692	10051767	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051768	10051867	1	-	1	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051768	10051867	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10051868	10051983	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10051984	10052099	1	-	0	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10051984	10052099	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10052100	10052195	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10052196	10052233	1	-	2	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10052196	10052233	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10052234	10052349	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10052350	10052495	0.99	-	1	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10052350	10052495	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10052496	10052597	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10052598	10052955	1	-	2	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10052598	10052955	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10052956	10053145	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10053146	10053228	1	-	1	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10053146	10053228	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10053229	10053325	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10053326	10053346	0.99	-	1	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10053326	10053346	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10053347	10053440	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10053441	10053502	0.62	-	0	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10053441	10053502	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10053503	10054533	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10054534	10055087	0.96	-	2	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10054534	10055087	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	intron	10055088	10055221	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	CDS	10055222	10055237	0.9	-	0	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	exon	10055222	10055237	.	-	.	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
Ledus.S4	AUGUSTUS	start_codon	10055235	10055237	.	-	0	transcript_id "Ledus.S4G131700.t3"; gene_id "Ledus.S4G131700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13143.t1 is derived from g6953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7139179	7139619	.	+	.	Ledus.S6G020500
Ledus.S6	AUGUSTUS	transcript	7139179	7139619	.	+	.	transcript_id "Ledus.S6G020500.t1"; gene_id "Ledus.S6G020500"
Ledus.S6	AUGUSTUS	start_codon	7139179	7139181	.	+	0	transcript_id "Ledus.S6G020500.t1"; gene_id "Ledus.S6G020500"
Ledus.S6	AUGUSTUS	CDS	7139179	7139619	0.77	+	0	transcript_id "Ledus.S6G020500.t1"; gene_id "Ledus.S6G020500"
Ledus.S6	AUGUSTUS	exon	7139179	7139619	.	+	.	transcript_id "Ledus.S6G020500.t1"; gene_id "Ledus.S6G020500"
Ledus.S6	AUGUSTUS	stop_codon	7139620	7139622	.	+	0	transcript_id "Ledus.S6G020500.t1"; gene_id "Ledus.S6G020500"
# This transcript jg5202.t2 is derived from g2641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5203.t1 is derived from g2642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22443367	22447224	.	-	.	Ledus.S1G262400
Ledus.S1	AUGUSTUS	transcript	22443367	22447224	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	stop_codon	22443364	22443366	.	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22443367	22443393	1	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22443367	22443393	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22443394	22443548	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22443549	22443779	1	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22443549	22443779	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22443780	22443884	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22443885	22443938	1	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22443885	22443938	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22443939	22444062	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22444063	22444211	1	-	2	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22444063	22444211	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22444212	22444294	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22444295	22444403	1	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22444295	22444403	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22444404	22444545	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22444546	22444635	1	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22444546	22444635	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22444636	22444951	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22444952	22445002	1	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22444952	22445002	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22445003	22445179	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22445180	22445284	1	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22445180	22445284	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22445285	22445370	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22445371	22445482	1	-	1	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22445371	22445482	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22445483	22445570	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22445571	22445653	1	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22445571	22445653	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22445654	22445882	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22445883	22446006	1	-	1	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22445883	22446006	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22446007	22446164	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22446165	22446305	0.88	-	1	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22446165	22446305	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22446306	22446404	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22446405	22446490	0.99	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22446405	22446490	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22446491	22446818	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22446819	22446908	0.89	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22446819	22446908	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	intron	22446909	22447149	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	CDS	22447150	22447224	0.58	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	exon	22447150	22447224	.	-	.	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
Ledus.S1	AUGUSTUS	start_codon	22447222	22447224	.	-	0	transcript_id "Ledus.S1G262400.t1"; gene_id "Ledus.S1G262400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3938.t1 is derived from g1374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13655785	13656447	.	-	.	Ledus.S1G135900
Ledus.S1	AUGUSTUS	transcript	13655785	13656447	.	-	.	transcript_id "Ledus.S1G135900.t1"; gene_id "Ledus.S1G135900"
Ledus.S1	AUGUSTUS	stop_codon	13655782	13655784	.	-	0	transcript_id "Ledus.S1G135900.t1"; gene_id "Ledus.S1G135900"
Ledus.S1	AUGUSTUS	CDS	13655785	13656447	0.93	-	0	transcript_id "Ledus.S1G135900.t1"; gene_id "Ledus.S1G135900"
Ledus.S1	AUGUSTUS	exon	13655785	13656447	.	-	.	transcript_id "Ledus.S1G135900.t1"; gene_id "Ledus.S1G135900"
Ledus.S1	AUGUSTUS	start_codon	13656445	13656447	.	-	0	transcript_id "Ledus.S1G135900.t1"; gene_id "Ledus.S1G135900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12731.t1 is derived from g6353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14125667	14127086	.	-	.	Ledus.S4G188700
Ledus.S4	AUGUSTUS	transcript	14125667	14127086	.	-	.	transcript_id "Ledus.S4G188700.t1"; gene_id "Ledus.S4G188700"
Ledus.S4	AUGUSTUS	stop_codon	14125664	14125666	.	-	0	transcript_id "Ledus.S4G188700.t1"; gene_id "Ledus.S4G188700"
Ledus.S4	AUGUSTUS	CDS	14125667	14125850	1	-	1	transcript_id "Ledus.S4G188700.t1"; gene_id "Ledus.S4G188700"
Ledus.S4	AUGUSTUS	exon	14125667	14125850	.	-	.	transcript_id "Ledus.S4G188700.t1"; gene_id "Ledus.S4G188700"
Ledus.S4	AUGUSTUS	intron	14125851	14125950	.	-	.	transcript_id "Ledus.S4G188700.t1"; gene_id "Ledus.S4G188700"
Ledus.S4	AUGUSTUS	CDS	14125951	14126275	0.99	-	2	transcript_id "Ledus.S4G188700.t1"; gene_id "Ledus.S4G188700"
Ledus.S4	AUGUSTUS	exon	14125951	14126275	.	-	.	transcript_id "Ledus.S4G188700.t1"; gene_id "Ledus.S4G188700"
Ledus.S4	AUGUSTUS	intron	14126276	14126377	.	-	.	transcript_id "Ledus.S4G188700.t1"; gene_id "Ledus.S4G188700"
Ledus.S4	AUGUSTUS	CDS	14126378	14127086	0.92	-	0	transcript_id "Ledus.S4G188700.t1"; gene_id "Ledus.S4G188700"
Ledus.S4	AUGUSTUS	exon	14126378	14127086	.	-	.	transcript_id "Ledus.S4G188700.t1"; gene_id "Ledus.S4G188700"
Ledus.S4	AUGUSTUS	start_codon	14127084	14127086	.	-	0	transcript_id "Ledus.S4G188700.t1"; gene_id "Ledus.S4G188700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8225.t1 is derived from g12896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10024793	10025806	.	-	.	Ledus.S5G100300
Ledus.S5	AUGUSTUS	transcript	10024793	10025806	.	-	.	transcript_id "Ledus.S5G100300.t1"; gene_id "Ledus.S5G100300"
Ledus.S5	AUGUSTUS	stop_codon	10024790	10024792	.	-	0	transcript_id "Ledus.S5G100300.t1"; gene_id "Ledus.S5G100300"
Ledus.S5	AUGUSTUS	CDS	10024793	10025806	0.59	-	0	transcript_id "Ledus.S5G100300.t1"; gene_id "Ledus.S5G100300"
Ledus.S5	AUGUSTUS	exon	10024793	10025806	.	-	.	transcript_id "Ledus.S5G100300.t1"; gene_id "Ledus.S5G100300"
Ledus.S5	AUGUSTUS	start_codon	10025804	10025806	.	-	0	transcript_id "Ledus.S5G100300.t1"; gene_id "Ledus.S5G100300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11877.t1 is derived from g5496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7484858	7485478	.	+	.	Ledus.S4G103300
Ledus.S4	AUGUSTUS	transcript	7484858	7485478	.	+	.	transcript_id "Ledus.S4G103300.t1"; gene_id "Ledus.S4G103300"
Ledus.S4	AUGUSTUS	start_codon	7484858	7484860	.	+	0	transcript_id "Ledus.S4G103300.t1"; gene_id "Ledus.S4G103300"
Ledus.S4	AUGUSTUS	CDS	7484858	7485478	1	+	0	transcript_id "Ledus.S4G103300.t1"; gene_id "Ledus.S4G103300"
Ledus.S4	AUGUSTUS	exon	7484858	7485478	.	+	.	transcript_id "Ledus.S4G103300.t1"; gene_id "Ledus.S4G103300"
Ledus.S4	AUGUSTUS	stop_codon	7485479	7485481	.	+	0	transcript_id "Ledus.S4G103300.t1"; gene_id "Ledus.S4G103300"
# This transcript jg2542.t2 is derived from g9405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2543.t1 is derived from g9406.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18841058	18844188	.	+	.	Ledus.S2G242500
Ledus.S2	AUGUSTUS	transcript	18841058	18844188	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	start_codon	18841058	18841060	.	+	0	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	CDS	18841058	18841186	0.39	+	0	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	exon	18841058	18841186	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	intron	18841187	18841372	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	CDS	18841373	18841502	0.34	+	0	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	exon	18841373	18841502	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	intron	18841503	18841703	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	CDS	18841704	18841727	0.41	+	2	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	exon	18841704	18841727	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	intron	18841728	18841922	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	CDS	18841923	18842046	0.29	+	2	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	exon	18841923	18842046	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	intron	18842047	18842142	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	CDS	18842143	18842170	0.91	+	1	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	exon	18842143	18842170	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	intron	18842171	18842326	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	CDS	18842327	18842503	0.96	+	0	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	exon	18842327	18842503	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	intron	18842504	18842697	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	CDS	18842698	18842915	1	+	0	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	exon	18842698	18842915	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	intron	18842916	18843056	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	CDS	18843057	18843212	1	+	1	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	exon	18843057	18843212	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	intron	18843213	18843335	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	CDS	18843336	18843521	0.95	+	1	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	exon	18843336	18843521	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	intron	18843522	18843857	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	CDS	18843858	18844036	1	+	1	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	exon	18843858	18844036	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	intron	18844037	18844171	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	CDS	18844172	18844188	1	+	2	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	exon	18844172	18844188	.	+	.	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
Ledus.S2	AUGUSTUS	stop_codon	18844189	18844191	.	+	0	transcript_id "Ledus.S2G242500.t1"; gene_id "Ledus.S2G242500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1125.t1 is derived from g7986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7734846	7735196	.	+	.	Ledus.S2G100700
Ledus.S2	AUGUSTUS	transcript	7734846	7735196	.	+	.	transcript_id "Ledus.S2G100700.t1"; gene_id "Ledus.S2G100700"
Ledus.S2	AUGUSTUS	start_codon	7734846	7734848	.	+	0	transcript_id "Ledus.S2G100700.t1"; gene_id "Ledus.S2G100700"
Ledus.S2	AUGUSTUS	CDS	7734846	7735196	1	+	0	transcript_id "Ledus.S2G100700.t1"; gene_id "Ledus.S2G100700"
Ledus.S2	AUGUSTUS	exon	7734846	7735196	.	+	.	transcript_id "Ledus.S2G100700.t1"; gene_id "Ledus.S2G100700"
Ledus.S2	AUGUSTUS	stop_codon	7735197	7735199	.	+	0	transcript_id "Ledus.S2G100700.t1"; gene_id "Ledus.S2G100700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg936.t1 is derived from g7797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6236261	6236686	.	-	.	Ledus.S2G081800
Ledus.S2	AUGUSTUS	transcript	6236261	6236686	.	-	.	transcript_id "Ledus.S2G081800.t1"; gene_id "Ledus.S2G081800"
Ledus.S2	AUGUSTUS	stop_codon	6236258	6236260	.	-	0	transcript_id "Ledus.S2G081800.t1"; gene_id "Ledus.S2G081800"
Ledus.S2	AUGUSTUS	CDS	6236261	6236290	0.47	-	0	transcript_id "Ledus.S2G081800.t1"; gene_id "Ledus.S2G081800"
Ledus.S2	AUGUSTUS	exon	6236261	6236290	.	-	.	transcript_id "Ledus.S2G081800.t1"; gene_id "Ledus.S2G081800"
Ledus.S2	AUGUSTUS	intron	6236291	6236479	.	-	.	transcript_id "Ledus.S2G081800.t1"; gene_id "Ledus.S2G081800"
Ledus.S2	AUGUSTUS	CDS	6236480	6236686	0.78	-	0	transcript_id "Ledus.S2G081800.t1"; gene_id "Ledus.S2G081800"
Ledus.S2	AUGUSTUS	exon	6236480	6236686	.	-	.	transcript_id "Ledus.S2G081800.t1"; gene_id "Ledus.S2G081800"
Ledus.S2	AUGUSTUS	start_codon	6236684	6236686	.	-	0	transcript_id "Ledus.S2G081800.t1"; gene_id "Ledus.S2G081800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11702.t1 is derived from g5321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6078240	6078957	.	+	.	Ledus.S4G085800
Ledus.S4	AUGUSTUS	transcript	6078240	6078957	.	+	.	transcript_id "Ledus.S4G085800.t1"; gene_id "Ledus.S4G085800"
Ledus.S4	AUGUSTUS	start_codon	6078240	6078242	.	+	0	transcript_id "Ledus.S4G085800.t1"; gene_id "Ledus.S4G085800"
Ledus.S4	AUGUSTUS	CDS	6078240	6078518	0.4	+	0	transcript_id "Ledus.S4G085800.t1"; gene_id "Ledus.S4G085800"
Ledus.S4	AUGUSTUS	exon	6078240	6078518	.	+	.	transcript_id "Ledus.S4G085800.t1"; gene_id "Ledus.S4G085800"
Ledus.S4	AUGUSTUS	intron	6078519	6078621	.	+	.	transcript_id "Ledus.S4G085800.t1"; gene_id "Ledus.S4G085800"
Ledus.S4	AUGUSTUS	CDS	6078622	6078957	1	+	0	transcript_id "Ledus.S4G085800.t1"; gene_id "Ledus.S4G085800"
Ledus.S4	AUGUSTUS	exon	6078622	6078957	.	+	.	transcript_id "Ledus.S4G085800.t1"; gene_id "Ledus.S4G085800"
Ledus.S4	AUGUSTUS	stop_codon	6078958	6078960	.	+	0	transcript_id "Ledus.S4G085800.t1"; gene_id "Ledus.S4G085800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2699.t1 is derived from g132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2082945	2083855	.	-	.	Ledus.S1G012000
Ledus.S1	AUGUSTUS	transcript	2082945	2083855	.	-	.	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	stop_codon	2082942	2082944	.	-	0	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	CDS	2082945	2083136	1	-	0	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	exon	2082945	2083136	.	-	.	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	intron	2083137	2083209	.	-	.	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	CDS	2083210	2083379	1	-	2	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	exon	2083210	2083379	.	-	.	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	intron	2083380	2083468	.	-	.	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	CDS	2083469	2083534	1	-	2	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	exon	2083469	2083534	.	-	.	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	intron	2083535	2083605	.	-	.	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	CDS	2083606	2083855	0.96	-	0	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	exon	2083606	2083855	.	-	.	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
Ledus.S1	AUGUSTUS	start_codon	2083853	2083855	.	-	0	transcript_id "Ledus.S1G012000.t1"; gene_id "Ledus.S1G012000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3519.t1 is derived from g954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9031367	9032462	.	+	.	Ledus.S1G094000
Ledus.S1	AUGUSTUS	transcript	9031367	9032462	.	+	.	transcript_id "Ledus.S1G094000.t1"; gene_id "Ledus.S1G094000"
Ledus.S1	AUGUSTUS	start_codon	9031367	9031369	.	+	0	transcript_id "Ledus.S1G094000.t1"; gene_id "Ledus.S1G094000"
Ledus.S1	AUGUSTUS	CDS	9031367	9031753	0.61	+	0	transcript_id "Ledus.S1G094000.t1"; gene_id "Ledus.S1G094000"
Ledus.S1	AUGUSTUS	exon	9031367	9031753	.	+	.	transcript_id "Ledus.S1G094000.t1"; gene_id "Ledus.S1G094000"
Ledus.S1	AUGUSTUS	intron	9031754	9031829	.	+	.	transcript_id "Ledus.S1G094000.t1"; gene_id "Ledus.S1G094000"
Ledus.S1	AUGUSTUS	CDS	9031830	9032462	0.89	+	0	transcript_id "Ledus.S1G094000.t1"; gene_id "Ledus.S1G094000"
Ledus.S1	AUGUSTUS	exon	9031830	9032462	.	+	.	transcript_id "Ledus.S1G094000.t1"; gene_id "Ledus.S1G094000"
Ledus.S1	AUGUSTUS	stop_codon	9032463	9032465	.	+	0	transcript_id "Ledus.S1G094000.t1"; gene_id "Ledus.S1G094000"
# This transcript jg12446.t2 is derived from g6067.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12447.t1 is derived from g6068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12040938	12041655	.	-	.	Ledus.S4G160300
Ledus.S4	AUGUSTUS	transcript	12040938	12041655	.	-	.	transcript_id "Ledus.S4G160300.t1"; gene_id "Ledus.S4G160300"
Ledus.S4	AUGUSTUS	stop_codon	12040935	12040937	.	-	0	transcript_id "Ledus.S4G160300.t1"; gene_id "Ledus.S4G160300"
Ledus.S4	AUGUSTUS	CDS	12040938	12040994	0.37	-	0	transcript_id "Ledus.S4G160300.t1"; gene_id "Ledus.S4G160300"
Ledus.S4	AUGUSTUS	exon	12040938	12040994	.	-	.	transcript_id "Ledus.S4G160300.t1"; gene_id "Ledus.S4G160300"
Ledus.S4	AUGUSTUS	intron	12040995	12041193	.	-	.	transcript_id "Ledus.S4G160300.t1"; gene_id "Ledus.S4G160300"
Ledus.S4	AUGUSTUS	CDS	12041194	12041655	0.21	-	0	transcript_id "Ledus.S4G160300.t1"; gene_id "Ledus.S4G160300"
Ledus.S4	AUGUSTUS	exon	12041194	12041655	.	-	.	transcript_id "Ledus.S4G160300.t1"; gene_id "Ledus.S4G160300"
Ledus.S4	AUGUSTUS	start_codon	12041653	12041655	.	-	0	transcript_id "Ledus.S4G160300.t1"; gene_id "Ledus.S4G160300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg388.t1 is derived from g7249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2177338	2177610	.	+	.	Ledus.S2G027000
Ledus.S2	AUGUSTUS	transcript	2177338	2177610	.	+	.	transcript_id "Ledus.S2G027000.t1"; gene_id "Ledus.S2G027000"
Ledus.S2	AUGUSTUS	start_codon	2177338	2177340	.	+	0	transcript_id "Ledus.S2G027000.t1"; gene_id "Ledus.S2G027000"
Ledus.S2	AUGUSTUS	CDS	2177338	2177610	0.7	+	0	transcript_id "Ledus.S2G027000.t1"; gene_id "Ledus.S2G027000"
Ledus.S2	AUGUSTUS	exon	2177338	2177610	.	+	.	transcript_id "Ledus.S2G027000.t1"; gene_id "Ledus.S2G027000"
Ledus.S2	AUGUSTUS	stop_codon	2177611	2177613	.	+	0	transcript_id "Ledus.S2G027000.t1"; gene_id "Ledus.S2G027000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12296.t1 is derived from g5916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11085504	11092548	.	-	.	Ledus.S4G145200
Ledus.S4	AUGUSTUS	transcript	11085504	11092548	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	stop_codon	11085501	11085503	.	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11085504	11086033	0.99	-	2	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11085504	11086033	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11086034	11086136	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11086137	11086350	1	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11086137	11086350	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11086351	11086440	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11086441	11086555	1	-	1	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11086441	11086555	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11086556	11086648	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11086649	11086879	1	-	1	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11086649	11086879	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11086880	11086951	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11086952	11087055	1	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11086952	11087055	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11087056	11087154	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11087155	11087373	1	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11087155	11087373	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11087374	11087463	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11087464	11088053	1	-	2	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11087464	11088053	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11088054	11088143	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11088144	11088241	1	-	1	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11088144	11088241	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11088242	11088321	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11088322	11088416	1	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11088322	11088416	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11088417	11088513	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11088514	11088549	0.73	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11088514	11088549	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11088550	11088861	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11088862	11089046	0.26	-	2	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11088862	11089046	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11089047	11089177	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11089178	11089311	0.45	-	1	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11089178	11089311	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11089312	11089503	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11089504	11089529	0.73	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11089504	11089529	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11089530	11089662	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11089663	11089752	0.73	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11089663	11089752	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11089753	11089847	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11089848	11090070	1	-	1	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11089848	11090070	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11090071	11090226	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11090227	11090409	1	-	1	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11090227	11090409	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11090410	11090530	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11090531	11090631	1	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11090531	11090631	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11090632	11090727	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11090728	11090835	1	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11090728	11090835	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11090836	11090979	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11090980	11091084	1	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11090980	11091084	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11091085	11091189	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11091190	11091263	1	-	2	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11091190	11091263	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11091264	11091403	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11091404	11091464	1	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11091404	11091464	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11091465	11091593	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11091594	11091668	1	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11091594	11091668	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11091669	11091753	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11091754	11091864	1	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11091754	11091864	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	intron	11091865	11092101	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	CDS	11092102	11092548	0.98	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	exon	11092102	11092548	.	-	.	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
Ledus.S4	AUGUSTUS	start_codon	11092546	11092548	.	-	0	transcript_id "Ledus.S4G145200.t1"; gene_id "Ledus.S4G145200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1192.t1 is derived from g8053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8437189	8438249	.	-	.	Ledus.S2G107400
Ledus.S2	AUGUSTUS	transcript	8437189	8438249	.	-	.	transcript_id "Ledus.S2G107400.t1"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	stop_codon	8437186	8437188	.	-	0	transcript_id "Ledus.S2G107400.t1"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	CDS	8437189	8437992	1	-	0	transcript_id "Ledus.S2G107400.t1"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	exon	8437189	8437992	.	-	.	transcript_id "Ledus.S2G107400.t1"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	intron	8437993	8438075	.	-	.	transcript_id "Ledus.S2G107400.t1"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	CDS	8438076	8438249	0.63	-	0	transcript_id "Ledus.S2G107400.t1"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	exon	8438076	8438249	.	-	.	transcript_id "Ledus.S2G107400.t1"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	start_codon	8438247	8438249	.	-	0	transcript_id "Ledus.S2G107400.t1"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	transcript	8437189	8438249	.	-	.	transcript_id "Ledus.S2G107400.t2"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	stop_codon	8437186	8437188	.	-	0	transcript_id "Ledus.S2G107400.t2"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	CDS	8437189	8437989	0.98	-	0	transcript_id "Ledus.S2G107400.t2"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	exon	8437189	8437989	.	-	.	transcript_id "Ledus.S2G107400.t2"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	intron	8437990	8438075	.	-	.	transcript_id "Ledus.S2G107400.t2"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	CDS	8438076	8438249	0.67	-	0	transcript_id "Ledus.S2G107400.t2"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	exon	8438076	8438249	.	-	.	transcript_id "Ledus.S2G107400.t2"; gene_id "Ledus.S2G107400"
Ledus.S2	AUGUSTUS	start_codon	8438247	8438249	.	-	0	transcript_id "Ledus.S2G107400.t2"; gene_id "Ledus.S2G107400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3092.t1 is derived from g527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5816402	5817718	.	-	.	Ledus.S1G051300
Ledus.S1	AUGUSTUS	transcript	5816402	5817718	.	-	.	transcript_id "Ledus.S1G051300.t1"; gene_id "Ledus.S1G051300"
Ledus.S1	AUGUSTUS	stop_codon	5816399	5816401	.	-	0	transcript_id "Ledus.S1G051300.t1"; gene_id "Ledus.S1G051300"
Ledus.S1	AUGUSTUS	CDS	5816402	5816815	1	-	0	transcript_id "Ledus.S1G051300.t1"; gene_id "Ledus.S1G051300"
Ledus.S1	AUGUSTUS	exon	5816402	5816815	.	-	.	transcript_id "Ledus.S1G051300.t1"; gene_id "Ledus.S1G051300"
Ledus.S1	AUGUSTUS	intron	5816816	5816908	.	-	.	transcript_id "Ledus.S1G051300.t1"; gene_id "Ledus.S1G051300"
Ledus.S1	AUGUSTUS	CDS	5816909	5817718	0.76	-	0	transcript_id "Ledus.S1G051300.t1"; gene_id "Ledus.S1G051300"
Ledus.S1	AUGUSTUS	exon	5816909	5817718	.	-	.	transcript_id "Ledus.S1G051300.t1"; gene_id "Ledus.S1G051300"
Ledus.S1	AUGUSTUS	start_codon	5817716	5817718	.	-	0	transcript_id "Ledus.S1G051300.t1"; gene_id "Ledus.S1G051300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7537.t1 is derived from g12208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3716445	3716741	.	+	.	Ledus.S5G031500
Ledus.S5	AUGUSTUS	transcript	3716445	3716741	.	+	.	transcript_id "Ledus.S5G031500.t1"; gene_id "Ledus.S5G031500"
Ledus.S5	AUGUSTUS	start_codon	3716445	3716447	.	+	0	transcript_id "Ledus.S5G031500.t1"; gene_id "Ledus.S5G031500"
Ledus.S5	AUGUSTUS	CDS	3716445	3716741	0.87	+	0	transcript_id "Ledus.S5G031500.t1"; gene_id "Ledus.S5G031500"
Ledus.S5	AUGUSTUS	exon	3716445	3716741	.	+	.	transcript_id "Ledus.S5G031500.t1"; gene_id "Ledus.S5G031500"
Ledus.S5	AUGUSTUS	stop_codon	3716742	3716744	.	+	0	transcript_id "Ledus.S5G031500.t1"; gene_id "Ledus.S5G031500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12759.t1 is derived from g6381.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14337308	14339207	.	-	.	Ledus.S4G191500
Ledus.S4	AUGUSTUS	transcript	14337308	14339207	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	stop_codon	14337305	14337307	.	-	0	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14337308	14337397	0.52	-	0	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14337308	14337397	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14337398	14337602	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14337603	14337713	1	-	0	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14337603	14337713	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14337714	14337779	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14337780	14337831	1	-	1	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14337780	14337831	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14337832	14337912	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14337913	14338052	1	-	0	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14337913	14338052	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14338053	14338167	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14338168	14338292	0.72	-	2	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14338168	14338292	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14338293	14338369	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14338370	14338456	1	-	2	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14338370	14338456	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14338457	14338558	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14338559	14338604	1	-	0	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14338559	14338604	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14338605	14338727	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14338728	14338935	0.76	-	1	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14338728	14338935	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14338936	14339139	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14339140	14339207	0.35	-	0	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14339140	14339207	.	-	.	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	start_codon	14339205	14339207	.	-	0	transcript_id "Ledus.S4G191500.t1"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	transcript	14337308	14339207	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	stop_codon	14337305	14337307	.	-	0	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14337308	14337397	0.4	-	0	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14337308	14337397	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14337398	14337602	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14337603	14337713	1	-	0	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14337603	14337713	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14337714	14337779	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14337780	14337831	1	-	1	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14337780	14337831	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14337832	14337912	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14337913	14338052	1	-	0	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14337913	14338052	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14338053	14338129	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14338130	14338224	0.41	-	2	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14338130	14338224	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14338225	14338369	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14338370	14338456	0.99	-	2	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14338370	14338456	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14338457	14338558	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14338559	14338604	0.99	-	0	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14338559	14338604	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14338605	14338727	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14338728	14338935	0.67	-	1	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14338728	14338935	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	intron	14338936	14339139	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	CDS	14339140	14339207	0.44	-	0	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	exon	14339140	14339207	.	-	.	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
Ledus.S4	AUGUSTUS	start_codon	14339205	14339207	.	-	0	transcript_id "Ledus.S4G191500.t2"; gene_id "Ledus.S4G191500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1660.t1 is derived from g8521.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11755814	11756335	.	+	.	Ledus.S2G154200
Ledus.S2	AUGUSTUS	transcript	11755814	11756335	.	+	.	transcript_id "Ledus.S2G154200.t1"; gene_id "Ledus.S2G154200"
Ledus.S2	AUGUSTUS	start_codon	11755814	11755816	.	+	0	transcript_id "Ledus.S2G154200.t1"; gene_id "Ledus.S2G154200"
Ledus.S2	AUGUSTUS	CDS	11755814	11756335	0.71	+	0	transcript_id "Ledus.S2G154200.t1"; gene_id "Ledus.S2G154200"
Ledus.S2	AUGUSTUS	exon	11755814	11756335	.	+	.	transcript_id "Ledus.S2G154200.t1"; gene_id "Ledus.S2G154200"
Ledus.S2	AUGUSTUS	stop_codon	11756436	11756438	.	+	0	transcript_id "Ledus.S2G154200.t1"; gene_id "Ledus.S2G154200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12654.t1 is derived from g6276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13625112	13626500	.	+	.	Ledus.S4G181000
Ledus.S4	AUGUSTUS	transcript	13625112	13626500	.	+	.	transcript_id "Ledus.S4G181000.t1"; gene_id "Ledus.S4G181000"
Ledus.S4	AUGUSTUS	start_codon	13625112	13625114	.	+	0	transcript_id "Ledus.S4G181000.t1"; gene_id "Ledus.S4G181000"
Ledus.S4	AUGUSTUS	CDS	13625112	13626500	0.99	+	0	transcript_id "Ledus.S4G181000.t1"; gene_id "Ledus.S4G181000"
Ledus.S4	AUGUSTUS	exon	13625112	13626500	.	+	.	transcript_id "Ledus.S4G181000.t1"; gene_id "Ledus.S4G181000"
Ledus.S4	AUGUSTUS	stop_codon	13626501	13626503	.	+	0	transcript_id "Ledus.S4G181000.t1"; gene_id "Ledus.S4G181000"
# This transcript jg9093.t2 is derived from g10123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9093.t3 is derived from g10123.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9094.t1 is derived from g10124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4550995	4552671	.	-	.	Ledus.S3G057100
Ledus.S3	AUGUSTUS	transcript	4550995	4552671	.	-	.	transcript_id "Ledus.S3G057100.t1"; gene_id "Ledus.S3G057100"
Ledus.S3	AUGUSTUS	stop_codon	4550992	4550994	.	-	0	transcript_id "Ledus.S3G057100.t1"; gene_id "Ledus.S3G057100"
Ledus.S3	AUGUSTUS	CDS	4550995	4552313	1	-	2	transcript_id "Ledus.S3G057100.t1"; gene_id "Ledus.S3G057100"
Ledus.S3	AUGUSTUS	exon	4550995	4552313	.	-	.	transcript_id "Ledus.S3G057100.t1"; gene_id "Ledus.S3G057100"
Ledus.S3	AUGUSTUS	intron	4552314	4552406	.	-	.	transcript_id "Ledus.S3G057100.t1"; gene_id "Ledus.S3G057100"
Ledus.S3	AUGUSTUS	CDS	4552407	4552517	0.59	-	2	transcript_id "Ledus.S3G057100.t1"; gene_id "Ledus.S3G057100"
Ledus.S3	AUGUSTUS	exon	4552407	4552517	.	-	.	transcript_id "Ledus.S3G057100.t1"; gene_id "Ledus.S3G057100"
Ledus.S3	AUGUSTUS	intron	4552518	4552619	.	-	.	transcript_id "Ledus.S3G057100.t1"; gene_id "Ledus.S3G057100"
Ledus.S3	AUGUSTUS	CDS	4552620	4552671	0.56	-	0	transcript_id "Ledus.S3G057100.t1"; gene_id "Ledus.S3G057100"
Ledus.S3	AUGUSTUS	exon	4552620	4552671	.	-	.	transcript_id "Ledus.S3G057100.t1"; gene_id "Ledus.S3G057100"
Ledus.S3	AUGUSTUS	start_codon	4552669	4552671	.	-	0	transcript_id "Ledus.S3G057100.t1"; gene_id "Ledus.S3G057100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3621.t1 is derived from g1057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10236628	10238628	.	-	.	Ledus.S1G104200
Ledus.S1	AUGUSTUS	transcript	10236628	10238628	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	stop_codon	10236625	10236627	.	-	0	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	CDS	10236628	10236805	0.87	-	1	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	exon	10236628	10236805	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	intron	10236806	10236890	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	CDS	10236891	10236976	1	-	0	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	exon	10236891	10236976	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	intron	10236977	10237076	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	CDS	10237077	10237179	1	-	1	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	exon	10237077	10237179	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	intron	10237180	10237251	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	CDS	10237252	10237512	1	-	1	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	exon	10237252	10237512	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	intron	10237513	10237633	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	CDS	10237634	10237824	1	-	0	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	exon	10237634	10237824	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	intron	10237825	10237918	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	CDS	10237919	10238219	1	-	1	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	exon	10237919	10238219	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	intron	10238220	10238314	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	CDS	10238315	10238628	0.88	-	0	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	exon	10238315	10238628	.	-	.	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
Ledus.S1	AUGUSTUS	start_codon	10238626	10238628	.	-	0	transcript_id "Ledus.S1G104200.t1"; gene_id "Ledus.S1G104200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9375.t1 is derived from g10405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6433154	6433561	.	+	.	Ledus.S3G085200
Ledus.S3	AUGUSTUS	transcript	6433154	6433561	.	+	.	transcript_id "Ledus.S3G085200.t1"; gene_id "Ledus.S3G085200"
Ledus.S3	AUGUSTUS	start_codon	6433154	6433156	.	+	0	transcript_id "Ledus.S3G085200.t1"; gene_id "Ledus.S3G085200"
Ledus.S3	AUGUSTUS	CDS	6433154	6433411	0.46	+	0	transcript_id "Ledus.S3G085200.t1"; gene_id "Ledus.S3G085200"
Ledus.S3	AUGUSTUS	exon	6433154	6433411	.	+	.	transcript_id "Ledus.S3G085200.t1"; gene_id "Ledus.S3G085200"
Ledus.S3	AUGUSTUS	intron	6433412	6433486	.	+	.	transcript_id "Ledus.S3G085200.t1"; gene_id "Ledus.S3G085200"
Ledus.S3	AUGUSTUS	CDS	6433487	6433561	0.84	+	0	transcript_id "Ledus.S3G085200.t1"; gene_id "Ledus.S3G085200"
Ledus.S3	AUGUSTUS	exon	6433487	6433561	.	+	.	transcript_id "Ledus.S3G085200.t1"; gene_id "Ledus.S3G085200"
Ledus.S3	AUGUSTUS	stop_codon	6433562	6433564	.	+	0	transcript_id "Ledus.S3G085200.t1"; gene_id "Ledus.S3G085200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2164.t1 is derived from g9027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15482798	15484480	.	+	.	Ledus.S2G204600
Ledus.S2	AUGUSTUS	transcript	15482798	15484480	.	+	.	transcript_id "Ledus.S2G204600.t1"; gene_id "Ledus.S2G204600"
Ledus.S2	AUGUSTUS	start_codon	15482798	15482800	.	+	0	transcript_id "Ledus.S2G204600.t1"; gene_id "Ledus.S2G204600"
Ledus.S2	AUGUSTUS	CDS	15482798	15484480	1	+	0	transcript_id "Ledus.S2G204600.t1"; gene_id "Ledus.S2G204600"
Ledus.S2	AUGUSTUS	exon	15482798	15484480	.	+	.	transcript_id "Ledus.S2G204600.t1"; gene_id "Ledus.S2G204600"
Ledus.S2	AUGUSTUS	stop_codon	15484481	15484483	.	+	0	transcript_id "Ledus.S2G204600.t1"; gene_id "Ledus.S2G204600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7260.t1 is derived from g11931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	520165	522728	.	+	.	Ledus.S5G003800
Ledus.S5	AUGUSTUS	transcript	520165	522728	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	start_codon	520165	520167	.	+	0	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	CDS	520165	520170	0.93	+	0	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	exon	520165	520170	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	intron	520171	520256	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	CDS	520257	520291	0.47	+	0	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	exon	520257	520291	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	intron	520292	520443	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	CDS	520444	520496	0.68	+	1	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	exon	520444	520496	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	intron	520497	520579	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	CDS	520580	520609	0.99	+	2	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	exon	520580	520609	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	intron	520610	520707	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	CDS	520708	520726	0.98	+	2	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	exon	520708	520726	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	intron	520727	520809	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	CDS	520810	522110	0.61	+	1	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	exon	520810	522110	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	intron	522111	522231	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	CDS	522232	522728	0.57	+	2	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	exon	522232	522728	.	+	.	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
Ledus.S5	AUGUSTUS	stop_codon	522729	522731	.	+	0	transcript_id "Ledus.S5G003800.t1"; gene_id "Ledus.S5G003800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12322.t1 is derived from g5943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11198652	11202594	.	-	.	Ledus.S4G147800
Ledus.S4	AUGUSTUS	transcript	11198652	11202594	.	-	.	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	stop_codon	11198649	11198651	.	-	0	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	CDS	11198652	11198732	0.51	-	0	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	exon	11198652	11198732	.	-	.	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	intron	11198733	11199008	.	-	.	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	CDS	11199009	11199551	1	-	0	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	exon	11199009	11199551	.	-	.	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	intron	11199552	11199628	.	-	.	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	CDS	11199629	11199709	1	-	0	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	exon	11199629	11199709	.	-	.	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	intron	11199710	11199873	.	-	.	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	CDS	11199874	11200125	1	-	0	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	exon	11199874	11200125	.	-	.	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	intron	11200126	11200304	.	-	.	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	CDS	11200305	11202078	0.76	-	1	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	exon	11200305	11202078	.	-	.	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	intron	11202079	11202184	.	-	.	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	CDS	11202185	11202594	0.66	-	0	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	exon	11202185	11202594	.	-	.	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
Ledus.S4	AUGUSTUS	start_codon	11202592	11202594	.	-	0	transcript_id "Ledus.S4G147800.t1"; gene_id "Ledus.S4G147800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3650.t1 is derived from g1086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10417133	10419581	.	-	.	Ledus.S1G107100
Ledus.S1	AUGUSTUS	transcript	10417133	10419581	.	-	.	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	stop_codon	10417130	10417132	.	-	0	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	CDS	10417133	10417522	1	-	0	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	exon	10417133	10417522	.	-	.	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	intron	10417523	10417615	.	-	.	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	CDS	10417616	10418362	0.99	-	0	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	exon	10417616	10418362	.	-	.	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	intron	10418363	10418456	.	-	.	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	CDS	10418457	10418660	0.99	-	0	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	exon	10418457	10418660	.	-	.	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	intron	10418661	10418741	.	-	.	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	CDS	10418742	10419171	1	-	1	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	exon	10418742	10419171	.	-	.	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	intron	10419172	10419327	.	-	.	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	CDS	10419328	10419371	1	-	0	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	exon	10419328	10419371	.	-	.	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	intron	10419372	10419476	.	-	.	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	CDS	10419477	10419581	0.28	-	0	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	exon	10419477	10419581	.	-	.	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
Ledus.S1	AUGUSTUS	start_codon	10419579	10419581	.	-	0	transcript_id "Ledus.S1G107100.t1"; gene_id "Ledus.S1G107100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12728.t1 is derived from g6350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14113431	14114960	.	-	.	Ledus.S4G188400
Ledus.S4	AUGUSTUS	transcript	14113431	14114960	.	-	.	transcript_id "Ledus.S4G188400.t1"; gene_id "Ledus.S4G188400"
Ledus.S4	AUGUSTUS	stop_codon	14113428	14113430	.	-	0	transcript_id "Ledus.S4G188400.t1"; gene_id "Ledus.S4G188400"
Ledus.S4	AUGUSTUS	CDS	14113431	14114960	0.92	-	0	transcript_id "Ledus.S4G188400.t1"; gene_id "Ledus.S4G188400"
Ledus.S4	AUGUSTUS	exon	14113431	14114960	.	-	.	transcript_id "Ledus.S4G188400.t1"; gene_id "Ledus.S4G188400"
Ledus.S4	AUGUSTUS	start_codon	14114958	14114960	.	-	0	transcript_id "Ledus.S4G188400.t1"; gene_id "Ledus.S4G188400"
# This transcript jg12694.t2 is derived from g6316.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12695.t1 is derived from g6317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13946076	13948307	.	+	.	Ledus.S4G185100
Ledus.S4	AUGUSTUS	transcript	13946076	13948307	.	+	.	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	start_codon	13946076	13946078	.	+	0	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	CDS	13946076	13946499	0.73	+	0	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	exon	13946076	13946499	.	+	.	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	intron	13946500	13946591	.	+	.	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	CDS	13946592	13946754	1	+	2	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	exon	13946592	13946754	.	+	.	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	intron	13946755	13946836	.	+	.	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	CDS	13946837	13947067	1	+	1	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	exon	13946837	13947067	.	+	.	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	intron	13947068	13947148	.	+	.	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	CDS	13947149	13947394	1	+	1	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	exon	13947149	13947394	.	+	.	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	intron	13947395	13947474	.	+	.	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	CDS	13947475	13947628	1	+	1	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	exon	13947475	13947628	.	+	.	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	intron	13947629	13947707	.	+	.	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	CDS	13947708	13948307	0.69	+	0	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	exon	13947708	13948307	.	+	.	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
Ledus.S4	AUGUSTUS	stop_codon	13948308	13948310	.	+	0	transcript_id "Ledus.S4G185100.t1"; gene_id "Ledus.S4G185100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8066.t1 is derived from g12737.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9029986	9030474	.	+	.	Ledus.S5G084400
Ledus.S5	AUGUSTUS	transcript	9029986	9030474	.	+	.	transcript_id "Ledus.S5G084400.t1"; gene_id "Ledus.S5G084400"
Ledus.S5	AUGUSTUS	start_codon	9029986	9029988	.	+	0	transcript_id "Ledus.S5G084400.t1"; gene_id "Ledus.S5G084400"
Ledus.S5	AUGUSTUS	CDS	9029986	9030474	0.94	+	0	transcript_id "Ledus.S5G084400.t1"; gene_id "Ledus.S5G084400"
Ledus.S5	AUGUSTUS	exon	9029986	9030474	.	+	.	transcript_id "Ledus.S5G084400.t1"; gene_id "Ledus.S5G084400"
Ledus.S5	AUGUSTUS	stop_codon	9030475	9030477	.	+	0	transcript_id "Ledus.S5G084400.t1"; gene_id "Ledus.S5G084400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12599.t1 is derived from g6221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13090176	13090439	.	-	.	Ledus.S4G175500
Ledus.S4	AUGUSTUS	transcript	13090176	13090439	.	-	.	transcript_id "Ledus.S4G175500.t1"; gene_id "Ledus.S4G175500"
Ledus.S4	AUGUSTUS	stop_codon	13090173	13090175	.	-	0	transcript_id "Ledus.S4G175500.t1"; gene_id "Ledus.S4G175500"
Ledus.S4	AUGUSTUS	CDS	13090176	13090439	0.5	-	0	transcript_id "Ledus.S4G175500.t1"; gene_id "Ledus.S4G175500"
Ledus.S4	AUGUSTUS	exon	13090176	13090439	.	-	.	transcript_id "Ledus.S4G175500.t1"; gene_id "Ledus.S4G175500"
Ledus.S4	AUGUSTUS	start_codon	13090437	13090439	.	-	0	transcript_id "Ledus.S4G175500.t1"; gene_id "Ledus.S4G175500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11871.t1 is derived from g5490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7449242	7450930	.	-	.	Ledus.S4G102700
Ledus.S4	AUGUSTUS	transcript	7449242	7450930	.	-	.	transcript_id "Ledus.S4G102700.t1"; gene_id "Ledus.S4G102700"
Ledus.S4	AUGUSTUS	stop_codon	7449239	7449241	.	-	0	transcript_id "Ledus.S4G102700.t1"; gene_id "Ledus.S4G102700"
Ledus.S4	AUGUSTUS	CDS	7449242	7450930	0.24	-	0	transcript_id "Ledus.S4G102700.t1"; gene_id "Ledus.S4G102700"
Ledus.S4	AUGUSTUS	exon	7449242	7450930	.	-	.	transcript_id "Ledus.S4G102700.t1"; gene_id "Ledus.S4G102700"
Ledus.S4	AUGUSTUS	start_codon	7450928	7450930	.	-	0	transcript_id "Ledus.S4G102700.t1"; gene_id "Ledus.S4G102700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8271.t1 is derived from g12942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10336689	10338307	.	-	.	Ledus.S5G104900
Ledus.S5	AUGUSTUS	transcript	10336689	10338307	.	-	.	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	stop_codon	10336686	10336688	.	-	0	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	CDS	10336689	10336905	0.99	-	1	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	exon	10336689	10336905	.	-	.	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	intron	10336906	10337040	.	-	.	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	CDS	10337041	10337211	1	-	1	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	exon	10337041	10337211	.	-	.	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	intron	10337212	10337362	.	-	.	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	CDS	10337363	10337415	1	-	0	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	exon	10337363	10337415	.	-	.	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	intron	10337416	10337506	.	-	.	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	CDS	10337507	10338307	0.7	-	0	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	exon	10337507	10338307	.	-	.	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
Ledus.S5	AUGUSTUS	start_codon	10338305	10338307	.	-	0	transcript_id "Ledus.S5G104900.t1"; gene_id "Ledus.S5G104900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7635.t1 is derived from g12306.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4654579	4655075	.	+	.	Ledus.S5G041300
Ledus.S5	AUGUSTUS	transcript	4654579	4655075	.	+	.	transcript_id "Ledus.S5G041300.t1"; gene_id "Ledus.S5G041300"
Ledus.S5	AUGUSTUS	start_codon	4654579	4654581	.	+	0	transcript_id "Ledus.S5G041300.t1"; gene_id "Ledus.S5G041300"
Ledus.S5	AUGUSTUS	CDS	4654579	4654872	0.54	+	0	transcript_id "Ledus.S5G041300.t1"; gene_id "Ledus.S5G041300"
Ledus.S5	AUGUSTUS	exon	4654579	4654872	.	+	.	transcript_id "Ledus.S5G041300.t1"; gene_id "Ledus.S5G041300"
Ledus.S5	AUGUSTUS	intron	4654873	4654961	.	+	.	transcript_id "Ledus.S5G041300.t1"; gene_id "Ledus.S5G041300"
Ledus.S5	AUGUSTUS	CDS	4654962	4655075	0.36	+	0	transcript_id "Ledus.S5G041300.t1"; gene_id "Ledus.S5G041300"
Ledus.S5	AUGUSTUS	exon	4654962	4655075	.	+	.	transcript_id "Ledus.S5G041300.t1"; gene_id "Ledus.S5G041300"
Ledus.S5	AUGUSTUS	stop_codon	4655076	4655078	.	+	0	transcript_id "Ledus.S5G041300.t1"; gene_id "Ledus.S5G041300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg577.t1 is derived from g7438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3431106	3433493	.	+	.	Ledus.S2G045900
Ledus.S2	AUGUSTUS	transcript	3431106	3433493	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	start_codon	3431106	3431108	.	+	0	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	CDS	3431106	3431762	0.96	+	0	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	exon	3431106	3431762	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	intron	3431763	3431874	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	CDS	3431875	3432105	0.97	+	0	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	exon	3431875	3432105	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	intron	3432106	3432286	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	CDS	3432287	3432352	1	+	0	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	exon	3432287	3432352	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	intron	3432353	3432510	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	CDS	3432511	3432912	1	+	0	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	exon	3432511	3432912	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	intron	3432913	3433039	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	CDS	3433040	3433145	1	+	0	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	exon	3433040	3433145	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	intron	3433146	3433241	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	CDS	3433242	3433327	1	+	2	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	exon	3433242	3433327	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	intron	3433328	3433436	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	CDS	3433437	3433493	0.98	+	0	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	exon	3433437	3433493	.	+	.	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
Ledus.S2	AUGUSTUS	stop_codon	3433494	3433496	.	+	0	transcript_id "Ledus.S2G045900.t1"; gene_id "Ledus.S2G045900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9259.t1 is derived from g10289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5636305	5639362	.	-	.	Ledus.S3G073600
Ledus.S3	AUGUSTUS	transcript	5636305	5639362	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	stop_codon	5636302	5636304	.	-	0	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	CDS	5636305	5636511	1	-	0	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	exon	5636305	5636511	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	intron	5636512	5636600	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	CDS	5636601	5637008	1	-	0	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	exon	5636601	5637008	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	intron	5637009	5637088	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	CDS	5637089	5637512	0.76	-	1	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	exon	5637089	5637512	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	intron	5637513	5637702	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	CDS	5637703	5637745	0.29	-	2	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	exon	5637703	5637745	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	intron	5637746	5637879	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	CDS	5637880	5638056	0.79	-	2	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	exon	5637880	5638056	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	intron	5638057	5638144	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	CDS	5638145	5638236	1	-	1	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	exon	5638145	5638236	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	intron	5638237	5638359	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	CDS	5638360	5638462	1	-	2	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	exon	5638360	5638462	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	intron	5638463	5638650	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	CDS	5638651	5638751	1	-	1	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	exon	5638651	5638751	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	intron	5638752	5638919	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	CDS	5638920	5639011	1	-	0	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	exon	5638920	5639011	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	intron	5639012	5639132	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	CDS	5639133	5639198	1	-	0	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	exon	5639133	5639198	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	intron	5639199	5639338	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	CDS	5639339	5639362	1	-	0	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	exon	5639339	5639362	.	-	.	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
Ledus.S3	AUGUSTUS	start_codon	5639360	5639362	.	-	0	transcript_id "Ledus.S3G073600.t1"; gene_id "Ledus.S3G073600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg496.t1 is derived from g7357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2900789	2904677	.	-	.	Ledus.S2G037800
Ledus.S2	AUGUSTUS	transcript	2900789	2904677	.	-	.	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	stop_codon	2900786	2900788	.	-	0	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	CDS	2900789	2904119	1	-	1	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	exon	2900789	2904119	.	-	.	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	intron	2904120	2904217	.	-	.	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	CDS	2904218	2904395	1	-	2	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	exon	2904218	2904395	.	-	.	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	intron	2904396	2904477	.	-	.	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	CDS	2904478	2904532	0.74	-	0	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	exon	2904478	2904532	.	-	.	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	intron	2904533	2904614	.	-	.	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	CDS	2904615	2904677	0.72	-	0	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	exon	2904615	2904677	.	-	.	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
Ledus.S2	AUGUSTUS	start_codon	2904675	2904677	.	-	0	transcript_id "Ledus.S2G037800.t1"; gene_id "Ledus.S2G037800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8756.t1 is derived from g9786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1853505	1856833	.	-	.	Ledus.S3G023300
Ledus.S3	AUGUSTUS	transcript	1853505	1856833	.	-	.	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	stop_codon	1853502	1853504	.	-	0	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	CDS	1853505	1855015	0.99	-	2	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	exon	1853505	1855015	.	-	.	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	intron	1855016	1855203	.	-	.	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	CDS	1855204	1855381	0.82	-	0	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	exon	1855204	1855381	.	-	.	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	intron	1855382	1855466	.	-	.	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	CDS	1855467	1855502	1	-	0	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	exon	1855467	1855502	.	-	.	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	intron	1855503	1855597	.	-	.	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	CDS	1855598	1856833	0.93	-	0	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	exon	1855598	1856833	.	-	.	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
Ledus.S3	AUGUSTUS	start_codon	1856831	1856833	.	-	0	transcript_id "Ledus.S3G023300.t1"; gene_id "Ledus.S3G023300"
# This transcript jg8773.t2 is derived from g9803.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8774.t1 is derived from g9804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1908133	1910116	.	-	.	Ledus.S3G025100
Ledus.S3	AUGUSTUS	transcript	1908133	1910116	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	stop_codon	1908130	1908132	.	-	0	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	CDS	1908133	1908253	1	-	1	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	exon	1908133	1908253	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	intron	1908254	1908350	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	CDS	1908351	1908475	1	-	0	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	exon	1908351	1908475	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	intron	1908476	1908552	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	CDS	1908553	1908682	1	-	1	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	exon	1908553	1908682	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	intron	1908683	1908832	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	CDS	1908833	1908946	1	-	1	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	exon	1908833	1908946	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	intron	1908947	1909031	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	CDS	1909032	1909126	1	-	0	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	exon	1909032	1909126	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	intron	1909127	1909196	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	CDS	1909197	1909288	1	-	2	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	exon	1909197	1909288	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	intron	1909289	1909400	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	CDS	1909401	1909511	1	-	2	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	exon	1909401	1909511	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	intron	1909512	1909611	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	CDS	1909612	1909756	0.99	-	0	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	exon	1909612	1909756	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	intron	1909757	1909862	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	CDS	1909863	1909976	0.99	-	0	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	exon	1909863	1909976	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	intron	1909977	1910065	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	CDS	1910066	1910116	0.86	-	0	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	exon	1910066	1910116	.	-	.	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
Ledus.S3	AUGUSTUS	start_codon	1910114	1910116	.	-	0	transcript_id "Ledus.S3G025100.t1"; gene_id "Ledus.S3G025100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9576.t1 is derived from g10606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7890152	7890520	.	+	.	Ledus.S3G105300
Ledus.S3	AUGUSTUS	transcript	7890152	7890520	.	+	.	transcript_id "Ledus.S3G105300.t1"; gene_id "Ledus.S3G105300"
Ledus.S3	AUGUSTUS	start_codon	7890152	7890154	.	+	0	transcript_id "Ledus.S3G105300.t1"; gene_id "Ledus.S3G105300"
Ledus.S3	AUGUSTUS	CDS	7890152	7890520	0.44	+	0	transcript_id "Ledus.S3G105300.t1"; gene_id "Ledus.S3G105300"
Ledus.S3	AUGUSTUS	exon	7890152	7890520	.	+	.	transcript_id "Ledus.S3G105300.t1"; gene_id "Ledus.S3G105300"
Ledus.S3	AUGUSTUS	stop_codon	7890521	7890523	.	+	0	transcript_id "Ledus.S3G105300.t1"; gene_id "Ledus.S3G105300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3317.t1 is derived from g752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7442493	7443494	.	-	.	Ledus.S1G073800
Ledus.S1	AUGUSTUS	transcript	7442493	7443494	.	-	.	transcript_id "Ledus.S1G073800.t1"; gene_id "Ledus.S1G073800"
Ledus.S1	AUGUSTUS	stop_codon	7442490	7442492	.	-	0	transcript_id "Ledus.S1G073800.t1"; gene_id "Ledus.S1G073800"
Ledus.S1	AUGUSTUS	CDS	7442493	7443494	1	-	0	transcript_id "Ledus.S1G073800.t1"; gene_id "Ledus.S1G073800"
Ledus.S1	AUGUSTUS	exon	7442493	7443494	.	-	.	transcript_id "Ledus.S1G073800.t1"; gene_id "Ledus.S1G073800"
Ledus.S1	AUGUSTUS	start_codon	7443492	7443494	.	-	0	transcript_id "Ledus.S1G073800.t1"; gene_id "Ledus.S1G073800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11299.t1 is derived from g4917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3463357	3464811	.	-	.	Ledus.S4G045500
Ledus.S4	AUGUSTUS	transcript	3463357	3464275	.	-	.	transcript_id "Ledus.S4G045500.t1"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	stop_codon	3463354	3463356	.	-	0	transcript_id "Ledus.S4G045500.t1"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	CDS	3463357	3463611	0.97	-	0	transcript_id "Ledus.S4G045500.t1"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	exon	3463357	3463611	.	-	.	transcript_id "Ledus.S4G045500.t1"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	intron	3463612	3463706	.	-	.	transcript_id "Ledus.S4G045500.t1"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	CDS	3463707	3463792	1	-	2	transcript_id "Ledus.S4G045500.t1"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	exon	3463707	3463792	.	-	.	transcript_id "Ledus.S4G045500.t1"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	intron	3463793	3464235	.	-	.	transcript_id "Ledus.S4G045500.t1"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	CDS	3464236	3464275	0.65	-	0	transcript_id "Ledus.S4G045500.t1"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	exon	3464236	3464275	.	-	.	transcript_id "Ledus.S4G045500.t1"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	start_codon	3464273	3464275	.	-	0	transcript_id "Ledus.S4G045500.t1"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	transcript	3463357	3464811	.	-	.	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	stop_codon	3463354	3463356	.	-	0	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	CDS	3463357	3463611	0.99	-	0	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	exon	3463357	3463611	.	-	.	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	intron	3463612	3463706	.	-	.	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	CDS	3463707	3463792	0.97	-	2	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	exon	3463707	3463792	.	-	.	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	intron	3463793	3464034	.	-	.	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	CDS	3464035	3464132	0.43	-	1	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	exon	3464035	3464132	.	-	.	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	intron	3464133	3464298	.	-	.	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	CDS	3464299	3464311	0.45	-	2	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	exon	3464299	3464311	.	-	.	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	intron	3464312	3464525	.	-	.	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	CDS	3464526	3464608	1	-	1	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	exon	3464526	3464608	.	-	.	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	intron	3464609	3464794	.	-	.	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	CDS	3464795	3464811	1	-	0	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	exon	3464795	3464811	.	-	.	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
Ledus.S4	AUGUSTUS	start_codon	3464809	3464811	.	-	0	transcript_id "Ledus.S4G045500.t2"; gene_id "Ledus.S4G045500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1263.t1 is derived from g8124.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8947913	8949572	.	+	.	Ledus.S2G114500
Ledus.S2	AUGUSTUS	transcript	8947913	8949572	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	start_codon	8947913	8947915	.	+	0	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	CDS	8947913	8947987	1	+	0	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	exon	8947913	8947987	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	intron	8947988	8948314	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	CDS	8948315	8948390	1	+	0	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	exon	8948315	8948390	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	intron	8948391	8948497	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	CDS	8948498	8948545	1	+	2	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	exon	8948498	8948545	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	intron	8948546	8948644	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	CDS	8948645	8948668	1	+	2	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	exon	8948645	8948668	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	intron	8948669	8948778	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	CDS	8948779	8948961	1	+	2	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	exon	8948779	8948961	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	intron	8948962	8949046	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	CDS	8949047	8949122	1	+	2	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	exon	8949047	8949122	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	intron	8949123	8949221	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	CDS	8949222	8949365	0.43	+	1	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	exon	8949222	8949365	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	intron	8949366	8949436	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	CDS	8949437	8949572	0.41	+	1	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	exon	8949437	8949572	.	+	.	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
Ledus.S2	AUGUSTUS	stop_codon	8949573	8949575	.	+	0	transcript_id "Ledus.S2G114500.t1"; gene_id "Ledus.S2G114500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10152.t1 is derived from g11182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13352222	13352470	.	+	.	Ledus.S3G162900
Ledus.S3	AUGUSTUS	transcript	13352222	13352470	.	+	.	transcript_id "Ledus.S3G162900.t1"; gene_id "Ledus.S3G162900"
Ledus.S3	AUGUSTUS	start_codon	13352222	13352224	.	+	0	transcript_id "Ledus.S3G162900.t1"; gene_id "Ledus.S3G162900"
Ledus.S3	AUGUSTUS	CDS	13352222	13352470	0.49	+	0	transcript_id "Ledus.S3G162900.t1"; gene_id "Ledus.S3G162900"
Ledus.S3	AUGUSTUS	exon	13352222	13352470	.	+	.	transcript_id "Ledus.S3G162900.t1"; gene_id "Ledus.S3G162900"
Ledus.S3	AUGUSTUS	stop_codon	13352471	13352473	.	+	0	transcript_id "Ledus.S3G162900.t1"; gene_id "Ledus.S3G162900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8405.t1 is derived from g13077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11502619	11505674	.	-	.	Ledus.S5G118300
Ledus.S5	AUGUSTUS	transcript	11502619	11505674	.	-	.	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	stop_codon	11502616	11502618	.	-	0	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	CDS	11502619	11502927	0.99	-	0	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	exon	11502619	11502927	.	-	.	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	intron	11502928	11503042	.	-	.	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	CDS	11503043	11503507	0.91	-	0	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	exon	11503043	11503507	.	-	.	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	intron	11503508	11503638	.	-	.	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	CDS	11503639	11504163	0.91	-	0	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	exon	11503639	11504163	.	-	.	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	intron	11504164	11504312	.	-	.	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	CDS	11504313	11505220	0.49	-	2	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	exon	11504313	11505220	.	-	.	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	intron	11505221	11505313	.	-	.	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	CDS	11505314	11505674	0.21	-	0	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	exon	11505314	11505674	.	-	.	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
Ledus.S5	AUGUSTUS	start_codon	11505672	11505674	.	-	0	transcript_id "Ledus.S5G118300.t1"; gene_id "Ledus.S5G118300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg259.t1 is derived from g7120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1273559	1274727	.	-	.	Ledus.S2G014100
Ledus.S2	AUGUSTUS	transcript	1273559	1274727	.	-	.	transcript_id "Ledus.S2G014100.t1"; gene_id "Ledus.S2G014100"
Ledus.S2	AUGUSTUS	stop_codon	1273556	1273558	.	-	0	transcript_id "Ledus.S2G014100.t1"; gene_id "Ledus.S2G014100"
Ledus.S2	AUGUSTUS	CDS	1273559	1273789	0.87	-	0	transcript_id "Ledus.S2G014100.t1"; gene_id "Ledus.S2G014100"
Ledus.S2	AUGUSTUS	exon	1273559	1273789	.	-	.	transcript_id "Ledus.S2G014100.t1"; gene_id "Ledus.S2G014100"
Ledus.S2	AUGUSTUS	intron	1273790	1273891	.	-	.	transcript_id "Ledus.S2G014100.t1"; gene_id "Ledus.S2G014100"
Ledus.S2	AUGUSTUS	CDS	1273892	1274094	0.94	-	2	transcript_id "Ledus.S2G014100.t1"; gene_id "Ledus.S2G014100"
Ledus.S2	AUGUSTUS	exon	1273892	1274094	.	-	.	transcript_id "Ledus.S2G014100.t1"; gene_id "Ledus.S2G014100"
Ledus.S2	AUGUSTUS	intron	1274095	1274483	.	-	.	transcript_id "Ledus.S2G014100.t1"; gene_id "Ledus.S2G014100"
Ledus.S2	AUGUSTUS	CDS	1274484	1274727	1	-	0	transcript_id "Ledus.S2G014100.t1"; gene_id "Ledus.S2G014100"
Ledus.S2	AUGUSTUS	exon	1274484	1274727	.	-	.	transcript_id "Ledus.S2G014100.t1"; gene_id "Ledus.S2G014100"
Ledus.S2	AUGUSTUS	start_codon	1274725	1274727	.	-	0	transcript_id "Ledus.S2G014100.t1"; gene_id "Ledus.S2G014100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9483.t1 is derived from g10513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7303673	7308028	.	-	.	Ledus.S3G096000
Ledus.S3	AUGUSTUS	transcript	7303673	7308028	.	-	.	transcript_id "Ledus.S3G096000.t1"; gene_id "Ledus.S3G096000"
Ledus.S3	AUGUSTUS	stop_codon	7303670	7303672	.	-	0	transcript_id "Ledus.S3G096000.t1"; gene_id "Ledus.S3G096000"
Ledus.S3	AUGUSTUS	CDS	7303673	7307544	0.79	-	2	transcript_id "Ledus.S3G096000.t1"; gene_id "Ledus.S3G096000"
Ledus.S3	AUGUSTUS	exon	7303673	7307544	.	-	.	transcript_id "Ledus.S3G096000.t1"; gene_id "Ledus.S3G096000"
Ledus.S3	AUGUSTUS	intron	7307545	7307758	.	-	.	transcript_id "Ledus.S3G096000.t1"; gene_id "Ledus.S3G096000"
Ledus.S3	AUGUSTUS	CDS	7307759	7307768	1	-	0	transcript_id "Ledus.S3G096000.t1"; gene_id "Ledus.S3G096000"
Ledus.S3	AUGUSTUS	exon	7307759	7307768	.	-	.	transcript_id "Ledus.S3G096000.t1"; gene_id "Ledus.S3G096000"
Ledus.S3	AUGUSTUS	intron	7307769	7307968	.	-	.	transcript_id "Ledus.S3G096000.t1"; gene_id "Ledus.S3G096000"
Ledus.S3	AUGUSTUS	CDS	7307969	7308028	0.98	-	0	transcript_id "Ledus.S3G096000.t1"; gene_id "Ledus.S3G096000"
Ledus.S3	AUGUSTUS	exon	7307969	7308028	.	-	.	transcript_id "Ledus.S3G096000.t1"; gene_id "Ledus.S3G096000"
Ledus.S3	AUGUSTUS	start_codon	7308026	7308028	.	-	0	transcript_id "Ledus.S3G096000.t1"; gene_id "Ledus.S3G096000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10825.t1 is derived from g11857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18068559	18071585	.	+	.	Ledus.S3G230200
Ledus.S3	AUGUSTUS	transcript	18068559	18071585	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	start_codon	18068559	18068561	.	+	0	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	CDS	18068559	18068636	0.26	+	0	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	exon	18068559	18068636	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	intron	18068637	18068698	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	CDS	18068699	18069231	0.49	+	0	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	exon	18068699	18069231	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	intron	18069232	18069298	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	CDS	18069299	18069515	0.89	+	1	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	exon	18069299	18069515	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	intron	18069516	18069595	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	CDS	18069596	18069943	1	+	0	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	exon	18069596	18069943	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	intron	18069944	18070010	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	CDS	18070011	18070114	0.95	+	0	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	exon	18070011	18070114	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	intron	18070115	18070204	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	CDS	18070205	18070415	0.94	+	1	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	exon	18070205	18070415	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	intron	18070416	18070733	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	CDS	18070734	18070935	0.49	+	0	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	exon	18070734	18070935	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	intron	18070936	18071016	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	CDS	18071017	18071585	0.62	+	2	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	exon	18071017	18071585	.	+	.	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	stop_codon	18071586	18071588	.	+	0	transcript_id "Ledus.S3G230200.t1"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	transcript	18070725	18071585	.	+	.	transcript_id "Ledus.S3G230200.t2"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	start_codon	18070725	18070727	.	+	0	transcript_id "Ledus.S3G230200.t2"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	CDS	18070725	18071585	0.47	+	0	transcript_id "Ledus.S3G230200.t2"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	exon	18070725	18071585	.	+	.	transcript_id "Ledus.S3G230200.t2"; gene_id "Ledus.S3G230200"
Ledus.S3	AUGUSTUS	stop_codon	18071586	18071588	.	+	0	transcript_id "Ledus.S3G230200.t2"; gene_id "Ledus.S3G230200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3495.t1 is derived from g930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8761559	8768115	.	-	.	Ledus.S1G091600
Ledus.S1	AUGUSTUS	transcript	8761559	8768115	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	stop_codon	8761556	8761558	.	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8761559	8761780	0.58	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8761559	8761780	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8761781	8761866	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8761867	8762091	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8761867	8762091	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8762092	8762179	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8762180	8762251	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8762180	8762251	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8762252	8762376	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8762377	8762643	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8762377	8762643	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8762644	8762808	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8762809	8763033	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8762809	8763033	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8763034	8763177	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8763178	8763285	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8763178	8763285	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8763286	8763434	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8763435	8763536	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8763435	8763536	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8763537	8763682	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8763683	8763778	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8763683	8763778	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8763779	8763862	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8763863	8764021	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8763863	8764021	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8764022	8764235	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8764236	8764316	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8764236	8764316	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8764317	8764527	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8764528	8764791	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8764528	8764791	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8764792	8764897	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8764898	8764990	0.98	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8764898	8764990	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8764991	8765138	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8765139	8765207	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8765139	8765207	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8765208	8765385	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8765386	8765478	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8765386	8765478	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8765479	8765630	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8765631	8765731	1	-	2	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8765631	8765731	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8765732	8765893	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8765894	8765978	0.98	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8765894	8765978	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8765979	8766089	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8766090	8766304	0.98	-	2	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8766090	8766304	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8766305	8766472	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8766473	8766536	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8766473	8766536	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8766537	8766675	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8766676	8766792	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8766676	8766792	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8766793	8766984	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8766985	8767038	0.72	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8766985	8767038	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8767039	8767156	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8767157	8767257	0.96	-	2	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8767157	8767257	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8767258	8767373	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8767374	8767568	0.96	-	2	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8767374	8767568	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8767569	8767705	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8767706	8767772	1	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8767706	8767772	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	intron	8767773	8767974	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	CDS	8767975	8768115	0.57	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	exon	8767975	8768115	.	-	.	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
Ledus.S1	AUGUSTUS	start_codon	8768113	8768115	.	-	0	transcript_id "Ledus.S1G091600.t1"; gene_id "Ledus.S1G091600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9151.t1 is derived from g10181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4895200	4897335	.	-	.	Ledus.S3G062800
Ledus.S3	AUGUSTUS	transcript	4895200	4897335	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	stop_codon	4895197	4895199	.	-	0	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	CDS	4895200	4895440	0.99	-	1	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	exon	4895200	4895440	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	intron	4895441	4895522	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	CDS	4895523	4895698	1	-	0	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	exon	4895523	4895698	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	intron	4895699	4895798	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	CDS	4895799	4896170	0.95	-	0	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	exon	4895799	4896170	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	intron	4896171	4896275	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	CDS	4896276	4896443	0.97	-	0	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	exon	4896276	4896443	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	intron	4896444	4896512	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	CDS	4896513	4896975	0.49	-	1	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	exon	4896513	4896975	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	intron	4896976	4897111	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	CDS	4897112	4897207	0.47	-	1	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	exon	4897112	4897207	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	intron	4897208	4897306	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	CDS	4897307	4897335	0.91	-	0	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	exon	4897307	4897335	.	-	.	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
Ledus.S3	AUGUSTUS	start_codon	4897333	4897335	.	-	0	transcript_id "Ledus.S3G062800.t1"; gene_id "Ledus.S3G062800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1069.t1 is derived from g7930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7219534	7222256	.	-	.	Ledus.S2G095100
Ledus.S2	AUGUSTUS	transcript	7219534	7222256	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	stop_codon	7219531	7219533	.	-	0	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	CDS	7219534	7219824	0.99	-	0	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	exon	7219534	7219824	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	intron	7219825	7219922	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	CDS	7219923	7220129	1	-	0	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	exon	7219923	7220129	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	intron	7220130	7220200	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	CDS	7220201	7220521	1	-	0	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	exon	7220201	7220521	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	intron	7220522	7220729	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	CDS	7220730	7220780	1	-	0	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	exon	7220730	7220780	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	intron	7220781	7220875	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	CDS	7220876	7220980	1	-	0	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	exon	7220876	7220980	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	intron	7220981	7221133	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	CDS	7221134	7221196	1	-	0	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	exon	7221134	7221196	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	intron	7221197	7221397	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	CDS	7221398	7221514	1	-	0	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	exon	7221398	7221514	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	intron	7221515	7221625	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	CDS	7221626	7221693	0.97	-	2	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	exon	7221626	7221693	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	intron	7221694	7221791	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	CDS	7221792	7221883	1	-	1	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	exon	7221792	7221883	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	intron	7221884	7222146	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	CDS	7222147	7222256	0.78	-	0	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	exon	7222147	7222256	.	-	.	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
Ledus.S2	AUGUSTUS	start_codon	7222254	7222256	.	-	0	transcript_id "Ledus.S2G095100.t1"; gene_id "Ledus.S2G095100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11310.t1 is derived from g4928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3498140	3499754	.	+	.	Ledus.S4G046600
Ledus.S4	AUGUSTUS	transcript	3498140	3499754	.	+	.	transcript_id "Ledus.S4G046600.t1"; gene_id "Ledus.S4G046600"
Ledus.S4	AUGUSTUS	start_codon	3498140	3498142	.	+	0	transcript_id "Ledus.S4G046600.t1"; gene_id "Ledus.S4G046600"
Ledus.S4	AUGUSTUS	CDS	3498140	3498727	0.77	+	0	transcript_id "Ledus.S4G046600.t1"; gene_id "Ledus.S4G046600"
Ledus.S4	AUGUSTUS	exon	3498140	3498727	.	+	.	transcript_id "Ledus.S4G046600.t1"; gene_id "Ledus.S4G046600"
Ledus.S4	AUGUSTUS	intron	3498728	3498971	.	+	.	transcript_id "Ledus.S4G046600.t1"; gene_id "Ledus.S4G046600"
Ledus.S4	AUGUSTUS	CDS	3498972	3499346	0.99	+	0	transcript_id "Ledus.S4G046600.t1"; gene_id "Ledus.S4G046600"
Ledus.S4	AUGUSTUS	exon	3498972	3499346	.	+	.	transcript_id "Ledus.S4G046600.t1"; gene_id "Ledus.S4G046600"
Ledus.S4	AUGUSTUS	intron	3499347	3499460	.	+	.	transcript_id "Ledus.S4G046600.t1"; gene_id "Ledus.S4G046600"
Ledus.S4	AUGUSTUS	CDS	3499461	3499754	0.47	+	0	transcript_id "Ledus.S4G046600.t1"; gene_id "Ledus.S4G046600"
Ledus.S4	AUGUSTUS	exon	3499461	3499754	.	+	.	transcript_id "Ledus.S4G046600.t1"; gene_id "Ledus.S4G046600"
Ledus.S4	AUGUSTUS	stop_codon	3499755	3499757	.	+	0	transcript_id "Ledus.S4G046600.t1"; gene_id "Ledus.S4G046600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11252.t1 is derived from g4870.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2959920	2961279	.	+	.	Ledus.S4G040800
Ledus.S4	AUGUSTUS	transcript	2959920	2961279	.	+	.	transcript_id "Ledus.S4G040800.t1"; gene_id "Ledus.S4G040800"
Ledus.S4	AUGUSTUS	start_codon	2959920	2959922	.	+	0	transcript_id "Ledus.S4G040800.t1"; gene_id "Ledus.S4G040800"
Ledus.S4	AUGUSTUS	CDS	2959920	2960092	1	+	0	transcript_id "Ledus.S4G040800.t1"; gene_id "Ledus.S4G040800"
Ledus.S4	AUGUSTUS	exon	2959920	2960092	.	+	.	transcript_id "Ledus.S4G040800.t1"; gene_id "Ledus.S4G040800"
Ledus.S4	AUGUSTUS	intron	2960093	2960171	.	+	.	transcript_id "Ledus.S4G040800.t1"; gene_id "Ledus.S4G040800"
Ledus.S4	AUGUSTUS	CDS	2960172	2961279	1	+	1	transcript_id "Ledus.S4G040800.t1"; gene_id "Ledus.S4G040800"
Ledus.S4	AUGUSTUS	exon	2960172	2961279	.	+	.	transcript_id "Ledus.S4G040800.t1"; gene_id "Ledus.S4G040800"
Ledus.S4	AUGUSTUS	stop_codon	2961280	2961282	.	+	0	transcript_id "Ledus.S4G040800.t1"; gene_id "Ledus.S4G040800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4699.t1 is derived from g2137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19122264	19124139	.	-	.	Ledus.S1G212000
Ledus.S1	AUGUSTUS	transcript	19122264	19124139	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	stop_codon	19122261	19122263	.	-	0	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	CDS	19122264	19122449	0.65	-	0	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	exon	19122264	19122449	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	intron	19122450	19122548	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	CDS	19122549	19122638	1	-	0	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	exon	19122549	19122638	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	intron	19122639	19122724	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	CDS	19122725	19122841	1	-	0	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	exon	19122725	19122841	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	intron	19122842	19122917	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	CDS	19122918	19123139	1	-	0	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	exon	19122918	19123139	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	intron	19123140	19123212	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	CDS	19123213	19123273	1	-	1	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	exon	19123213	19123273	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	intron	19123274	19123369	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	CDS	19123370	19123424	1	-	2	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	exon	19123370	19123424	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	intron	19123425	19123521	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	CDS	19123522	19123612	1	-	0	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	exon	19123522	19123612	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	intron	19123613	19123712	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	CDS	19123713	19123799	1	-	0	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	exon	19123713	19123799	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	intron	19123800	19123890	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	CDS	19123891	19124139	1	-	0	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	exon	19123891	19124139	.	-	.	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
Ledus.S1	AUGUSTUS	start_codon	19124137	19124139	.	-	0	transcript_id "Ledus.S1G212000.t1"; gene_id "Ledus.S1G212000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7358.t1 is derived from g12029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1441319	1441663	.	-	.	Ledus.S5G013600
Ledus.S5	AUGUSTUS	transcript	1441319	1441663	.	-	.	transcript_id "Ledus.S5G013600.t1"; gene_id "Ledus.S5G013600"
Ledus.S5	AUGUSTUS	stop_codon	1441316	1441318	.	-	0	transcript_id "Ledus.S5G013600.t1"; gene_id "Ledus.S5G013600"
Ledus.S5	AUGUSTUS	CDS	1441319	1441663	1	-	0	transcript_id "Ledus.S5G013600.t1"; gene_id "Ledus.S5G013600"
Ledus.S5	AUGUSTUS	exon	1441319	1441663	.	-	.	transcript_id "Ledus.S5G013600.t1"; gene_id "Ledus.S5G013600"
Ledus.S5	AUGUSTUS	start_codon	1441661	1441663	.	-	0	transcript_id "Ledus.S5G013600.t1"; gene_id "Ledus.S5G013600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7218.t1 is derived from g6466.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C13	AUGUSTUS	gene	22259	23137	.	-	.	Ledus.C13G000100
Ledus.C13	AUGUSTUS	transcript	22259	23137	.	-	.	transcript_id "Ledus.C13G000100.t1"; gene_id "Ledus.C13G000100"
Ledus.C13	AUGUSTUS	stop_codon	22256	22258	.	-	0	transcript_id "Ledus.C13G000100.t1"; gene_id "Ledus.C13G000100"
Ledus.C13	AUGUSTUS	CDS	22259	23137	0.79	-	0	transcript_id "Ledus.C13G000100.t1"; gene_id "Ledus.C13G000100"
Ledus.C13	AUGUSTUS	exon	22259	23137	.	-	.	transcript_id "Ledus.C13G000100.t1"; gene_id "Ledus.C13G000100"
Ledus.C13	AUGUSTUS	start_codon	23135	23137	.	-	0	transcript_id "Ledus.C13G000100.t1"; gene_id "Ledus.C13G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10620.t1 is derived from g11650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16483107	16484396	.	-	.	Ledus.S3G209700
Ledus.S3	AUGUSTUS	transcript	16483107	16484396	.	-	.	transcript_id "Ledus.S3G209700.t1"; gene_id "Ledus.S3G209700"
Ledus.S3	AUGUSTUS	stop_codon	16483104	16483106	.	-	0	transcript_id "Ledus.S3G209700.t1"; gene_id "Ledus.S3G209700"
Ledus.S3	AUGUSTUS	CDS	16483107	16484396	0.56	-	0	transcript_id "Ledus.S3G209700.t1"; gene_id "Ledus.S3G209700"
Ledus.S3	AUGUSTUS	exon	16483107	16484396	.	-	.	transcript_id "Ledus.S3G209700.t1"; gene_id "Ledus.S3G209700"
Ledus.S3	AUGUSTUS	start_codon	16484394	16484396	.	-	0	transcript_id "Ledus.S3G209700.t1"; gene_id "Ledus.S3G209700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2600.t1 is derived from g33.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	275435	275671	.	-	.	Ledus.S1G002100
Ledus.S1	AUGUSTUS	transcript	275435	275671	.	-	.	transcript_id "Ledus.S1G002100.t1"; gene_id "Ledus.S1G002100"
Ledus.S1	AUGUSTUS	stop_codon	275432	275434	.	-	0	transcript_id "Ledus.S1G002100.t1"; gene_id "Ledus.S1G002100"
Ledus.S1	AUGUSTUS	CDS	275435	275671	0.91	-	0	transcript_id "Ledus.S1G002100.t1"; gene_id "Ledus.S1G002100"
Ledus.S1	AUGUSTUS	exon	275435	275671	.	-	.	transcript_id "Ledus.S1G002100.t1"; gene_id "Ledus.S1G002100"
Ledus.S1	AUGUSTUS	start_codon	275669	275671	.	-	0	transcript_id "Ledus.S1G002100.t1"; gene_id "Ledus.S1G002100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg394.t1 is derived from g7255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2212852	2216684	.	-	.	Ledus.S2G027600
Ledus.S2	AUGUSTUS	transcript	2212852	2216684	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	stop_codon	2212849	2212851	.	-	0	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	CDS	2212852	2213456	1	-	2	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	exon	2212852	2213456	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	intron	2213457	2213543	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	CDS	2213544	2213615	0.99	-	2	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	exon	2213544	2213615	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	intron	2213616	2213705	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	CDS	2213706	2213832	1	-	0	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	exon	2213706	2213832	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	intron	2213833	2213917	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	CDS	2213918	2214165	1	-	2	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	exon	2213918	2214165	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	intron	2214166	2214240	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	CDS	2214241	2214479	1	-	1	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	exon	2214241	2214479	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	intron	2214480	2214567	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	CDS	2214568	2214654	1	-	1	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	exon	2214568	2214654	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	intron	2214655	2214742	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	CDS	2214743	2214814	1	-	1	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	exon	2214743	2214814	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	intron	2214815	2214891	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	CDS	2214892	2214963	1	-	1	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	exon	2214892	2214963	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	intron	2214964	2215052	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	CDS	2215053	2215499	0.52	-	1	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	exon	2215053	2215499	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	intron	2215500	2215580	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	CDS	2215581	2216104	0.99	-	0	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	exon	2215581	2216104	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	intron	2216105	2216185	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	CDS	2216186	2216484	0.97	-	2	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	exon	2216186	2216484	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	intron	2216485	2216596	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	CDS	2216597	2216684	0.87	-	0	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	exon	2216597	2216684	.	-	.	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
Ledus.S2	AUGUSTUS	start_codon	2216682	2216684	.	-	0	transcript_id "Ledus.S2G027600.t1"; gene_id "Ledus.S2G027600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg3440.t1 is derived from g875.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8385057	8385724	.	-	.	Ledus.S1G086100
Ledus.S1	AUGUSTUS	transcript	8385068	8385724	.	-	.	transcript_id "Ledus.S1G086100.t1"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	stop_codon	8385065	8385067	.	-	0	transcript_id "Ledus.S1G086100.t1"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	CDS	8385068	8385100	0.98	-	0	transcript_id "Ledus.S1G086100.t1"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	exon	8385068	8385100	.	-	.	transcript_id "Ledus.S1G086100.t1"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	intron	8385101	8385237	.	-	.	transcript_id "Ledus.S1G086100.t1"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	CDS	8385238	8385321	1	-	0	transcript_id "Ledus.S1G086100.t1"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	exon	8385238	8385321	.	-	.	transcript_id "Ledus.S1G086100.t1"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	intron	8385322	8385511	.	-	.	transcript_id "Ledus.S1G086100.t1"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	CDS	8385512	8385724	1	-	0	transcript_id "Ledus.S1G086100.t1"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	exon	8385512	8385724	.	-	.	transcript_id "Ledus.S1G086100.t1"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	start_codon	8385722	8385724	.	-	0	transcript_id "Ledus.S1G086100.t1"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	transcript	8385057	8385724	.	-	.	transcript_id "Ledus.S1G086100.t2"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	stop_codon	8385054	8385056	.	-	0	transcript_id "Ledus.S1G086100.t2"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	CDS	8385057	8385100	0.86	-	2	transcript_id "Ledus.S1G086100.t2"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	exon	8385057	8385100	.	-	.	transcript_id "Ledus.S1G086100.t2"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	intron	8385101	8385237	.	-	.	transcript_id "Ledus.S1G086100.t2"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	CDS	8385238	8385316	1	-	0	transcript_id "Ledus.S1G086100.t2"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	exon	8385238	8385316	.	-	.	transcript_id "Ledus.S1G086100.t2"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	intron	8385317	8385511	.	-	.	transcript_id "Ledus.S1G086100.t2"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	CDS	8385512	8385724	1	-	0	transcript_id "Ledus.S1G086100.t2"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	exon	8385512	8385724	.	-	.	transcript_id "Ledus.S1G086100.t2"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	start_codon	8385722	8385724	.	-	0	transcript_id "Ledus.S1G086100.t2"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	transcript	8385057	8385724	.	-	.	transcript_id "Ledus.S1G086100.t3"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	stop_codon	8385054	8385056	.	-	0	transcript_id "Ledus.S1G086100.t3"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	CDS	8385057	8385100	0.63	-	2	transcript_id "Ledus.S1G086100.t3"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	exon	8385057	8385100	.	-	.	transcript_id "Ledus.S1G086100.t3"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	intron	8385101	8385237	.	-	.	transcript_id "Ledus.S1G086100.t3"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	CDS	8385238	8385316	0.68	-	0	transcript_id "Ledus.S1G086100.t3"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	exon	8385238	8385316	.	-	.	transcript_id "Ledus.S1G086100.t3"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	intron	8385317	8385493	.	-	.	transcript_id "Ledus.S1G086100.t3"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	CDS	8385494	8385724	0.69	-	0	transcript_id "Ledus.S1G086100.t3"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	exon	8385494	8385724	.	-	.	transcript_id "Ledus.S1G086100.t3"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	start_codon	8385722	8385724	.	-	0	transcript_id "Ledus.S1G086100.t3"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	transcript	8385068	8385724	.	-	.	transcript_id "Ledus.S1G086100.t4"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	stop_codon	8385065	8385067	.	-	0	transcript_id "Ledus.S1G086100.t4"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	CDS	8385068	8385100	0.96	-	0	transcript_id "Ledus.S1G086100.t4"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	exon	8385068	8385100	.	-	.	transcript_id "Ledus.S1G086100.t4"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	intron	8385101	8385237	.	-	.	transcript_id "Ledus.S1G086100.t4"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	CDS	8385238	8385316	0.58	-	1	transcript_id "Ledus.S1G086100.t4"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	exon	8385238	8385316	.	-	.	transcript_id "Ledus.S1G086100.t4"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	intron	8385317	8385488	.	-	.	transcript_id "Ledus.S1G086100.t4"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	CDS	8385489	8385724	0.57	-	0	transcript_id "Ledus.S1G086100.t4"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	exon	8385489	8385724	.	-	.	transcript_id "Ledus.S1G086100.t4"; gene_id "Ledus.S1G086100"
Ledus.S1	AUGUSTUS	start_codon	8385722	8385724	.	-	0	transcript_id "Ledus.S1G086100.t4"; gene_id "Ledus.S1G086100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12839.t1 is derived from g11873.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	53813	58570	.	-	.	Ledus.C11G000300
Ledus.C11	AUGUSTUS	transcript	53813	58570	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	stop_codon	53810	53812	.	-	0	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	CDS	53813	54027	1	-	2	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	exon	53813	54027	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	intron	54028	54123	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	CDS	54124	54313	1	-	0	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	exon	54124	54313	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	intron	54314	54393	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	CDS	54394	54492	1	-	0	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	exon	54394	54492	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	intron	54493	54572	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	CDS	54573	54668	1	-	0	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	exon	54573	54668	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	intron	54669	54754	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	CDS	54755	55735	1	-	0	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	exon	54755	55735	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	intron	55736	55829	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	CDS	55830	56048	1	-	0	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	exon	55830	56048	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	intron	56049	56148	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	CDS	56149	56358	1	-	0	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	exon	56149	56358	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	intron	56359	56439	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	CDS	56440	56699	1	-	2	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	exon	56440	56699	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	intron	56700	56782	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	CDS	56783	58357	0.99	-	2	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	exon	56783	58357	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	intron	58358	58437	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	CDS	58438	58570	1	-	0	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	exon	58438	58570	.	-	.	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
Ledus.C11	AUGUSTUS	start_codon	58568	58570	.	-	0	transcript_id "Ledus.C11G000300.t1"; gene_id "Ledus.C11G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4210.t1 is derived from g1646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15481996	15484600	.	-	.	Ledus.S1G163100
Ledus.S1	AUGUSTUS	transcript	15481996	15484600	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	stop_codon	15481993	15481995	.	-	0	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	CDS	15481996	15482040	0.58	-	0	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	exon	15481996	15482040	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	intron	15482041	15482518	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	CDS	15482519	15482688	0.43	-	2	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	exon	15482519	15482688	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	intron	15482689	15482764	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	CDS	15482765	15482861	0.32	-	0	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	exon	15482765	15482861	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	intron	15482862	15483175	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	CDS	15483176	15483235	0.52	-	0	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	exon	15483176	15483235	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	intron	15483236	15483377	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	CDS	15483378	15483453	0.67	-	1	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	exon	15483378	15483453	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	intron	15483454	15483585	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	CDS	15483586	15483613	0.83	-	2	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	exon	15483586	15483613	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	intron	15483614	15483788	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	CDS	15483789	15483898	0.91	-	1	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	exon	15483789	15483898	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	intron	15483899	15484026	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	CDS	15484027	15484082	0.58	-	0	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	exon	15484027	15484082	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	intron	15484083	15484169	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	CDS	15484170	15484280	0.44	-	0	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	exon	15484170	15484280	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	intron	15484281	15484498	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	CDS	15484499	15484600	0.44	-	0	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	exon	15484499	15484600	.	-	.	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
Ledus.S1	AUGUSTUS	start_codon	15484598	15484600	.	-	0	transcript_id "Ledus.S1G163100.t1"; gene_id "Ledus.S1G163100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2832.t1 is derived from g266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4007211	4009559	.	+	.	Ledus.S1G025300
Ledus.S1	AUGUSTUS	transcript	4007211	4009559	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	start_codon	4007211	4007213	.	+	0	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	CDS	4007211	4007286	0.89	+	0	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	exon	4007211	4007286	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	intron	4007287	4007385	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	CDS	4007386	4007504	1	+	2	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	exon	4007386	4007504	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	intron	4007505	4007576	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	CDS	4007577	4007677	0.97	+	0	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	exon	4007577	4007677	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	intron	4007678	4007790	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	CDS	4007791	4007986	1	+	1	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	exon	4007791	4007986	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	intron	4007987	4008186	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	CDS	4008187	4008279	1	+	0	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	exon	4008187	4008279	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	intron	4008280	4008407	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	CDS	4008408	4008467	0.96	+	0	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	exon	4008408	4008467	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	intron	4008468	4008579	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	CDS	4008580	4008654	0.97	+	0	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	exon	4008580	4008654	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	intron	4008655	4008804	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	CDS	4008805	4008894	1	+	0	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	exon	4008805	4008894	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	intron	4008895	4009019	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	CDS	4009020	4009559	1	+	0	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	exon	4009020	4009559	.	+	.	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
Ledus.S1	AUGUSTUS	stop_codon	4009560	4009562	.	+	0	transcript_id "Ledus.S1G025300.t1"; gene_id "Ledus.S1G025300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3575.t1 is derived from g1011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9754123	9755659	.	+	.	Ledus.S1G099600
Ledus.S1	AUGUSTUS	transcript	9754123	9755659	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	start_codon	9754123	9754125	.	+	0	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	CDS	9754123	9754323	0.94	+	0	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	exon	9754123	9754323	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	intron	9754324	9754410	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	CDS	9754411	9754518	0.96	+	0	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	exon	9754411	9754518	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	intron	9754519	9754624	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	CDS	9754625	9754721	1	+	0	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	exon	9754625	9754721	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	intron	9754722	9754818	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	CDS	9754819	9754858	1	+	2	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	exon	9754819	9754858	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	intron	9754859	9754945	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	CDS	9754946	9755020	1	+	1	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	exon	9754946	9755020	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	intron	9755021	9755096	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	CDS	9755097	9755184	1	+	1	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	exon	9755097	9755184	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	intron	9755185	9755260	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	CDS	9755261	9755328	1	+	0	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	exon	9755261	9755328	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	intron	9755329	9755416	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	CDS	9755417	9755489	1	+	1	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	exon	9755417	9755489	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	intron	9755490	9755581	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	CDS	9755582	9755659	1	+	0	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	exon	9755582	9755659	.	+	.	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
Ledus.S1	AUGUSTUS	stop_codon	9755660	9755662	.	+	0	transcript_id "Ledus.S1G099600.t1"; gene_id "Ledus.S1G099600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg136.t1 is derived from g6997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	239262	239663	.	-	.	Ledus.S2G001800
Ledus.S2	AUGUSTUS	transcript	239262	239663	.	-	.	transcript_id "Ledus.S2G001800.t1"; gene_id "Ledus.S2G001800"
Ledus.S2	AUGUSTUS	stop_codon	239259	239261	.	-	0	transcript_id "Ledus.S2G001800.t1"; gene_id "Ledus.S2G001800"
Ledus.S2	AUGUSTUS	CDS	239262	239663	1	-	0	transcript_id "Ledus.S2G001800.t1"; gene_id "Ledus.S2G001800"
Ledus.S2	AUGUSTUS	exon	239262	239663	.	-	.	transcript_id "Ledus.S2G001800.t1"; gene_id "Ledus.S2G001800"
Ledus.S2	AUGUSTUS	start_codon	239661	239663	.	-	0	transcript_id "Ledus.S2G001800.t1"; gene_id "Ledus.S2G001800"
# This transcript jg9535.t2 is derived from g10565.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9536.t1 is derived from g10566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7622166	7622748	.	-	.	Ledus.S3G101300
Ledus.S3	AUGUSTUS	transcript	7622166	7622748	.	-	.	transcript_id "Ledus.S3G101300.t1"; gene_id "Ledus.S3G101300"
Ledus.S3	AUGUSTUS	stop_codon	7622163	7622165	.	-	0	transcript_id "Ledus.S3G101300.t1"; gene_id "Ledus.S3G101300"
Ledus.S3	AUGUSTUS	CDS	7622166	7622451	0.75	-	1	transcript_id "Ledus.S3G101300.t1"; gene_id "Ledus.S3G101300"
Ledus.S3	AUGUSTUS	exon	7622166	7622451	.	-	.	transcript_id "Ledus.S3G101300.t1"; gene_id "Ledus.S3G101300"
Ledus.S3	AUGUSTUS	intron	7622452	7622533	.	-	.	transcript_id "Ledus.S3G101300.t1"; gene_id "Ledus.S3G101300"
Ledus.S3	AUGUSTUS	CDS	7622534	7622748	0.83	-	0	transcript_id "Ledus.S3G101300.t1"; gene_id "Ledus.S3G101300"
Ledus.S3	AUGUSTUS	exon	7622534	7622748	.	-	.	transcript_id "Ledus.S3G101300.t1"; gene_id "Ledus.S3G101300"
Ledus.S3	AUGUSTUS	start_codon	7622746	7622748	.	-	0	transcript_id "Ledus.S3G101300.t1"; gene_id "Ledus.S3G101300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11766.t1 is derived from g5385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6660121	6666904	.	-	.	Ledus.S4G092200
Ledus.S4	AUGUSTUS	transcript	6660121	6666904	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	stop_codon	6660118	6660120	.	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6660121	6660199	1	-	1	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6660121	6660199	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6660200	6660295	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6660296	6660383	1	-	2	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6660296	6660383	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6660384	6660470	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6660471	6660544	1	-	1	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6660471	6660544	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6660545	6660677	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6660678	6660838	0.85	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6660678	6660838	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6660839	6660957	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6660958	6661047	0.99	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6660958	6661047	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6661048	6661135	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6661136	6661210	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6661136	6661210	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6661211	6661288	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6661289	6661360	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6661289	6661360	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6661361	6661489	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6661490	6661662	1	-	2	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6661490	6661662	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6661663	6661826	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6661827	6661941	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6661827	6661941	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6661942	6662084	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6662085	6662198	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6662085	6662198	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6662199	6662285	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6662286	6662365	1	-	2	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6662286	6662365	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6662366	6662453	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6662454	6662541	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6662454	6662541	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6662542	6662639	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6662640	6662696	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6662640	6662696	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6662697	6662794	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6662795	6662860	0.99	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6662795	6662860	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6662861	6662983	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6662984	6663079	0.99	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6662984	6663079	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6663080	6663176	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6663177	6663284	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6663177	6663284	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6663285	6663442	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6663443	6663541	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6663443	6663541	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6663542	6663683	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6663684	6663803	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6663684	6663803	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6663804	6663989	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6663990	6664076	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6663990	6664076	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6664077	6664214	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6664215	6664286	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6664215	6664286	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6664287	6664427	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6664428	6664494	1	-	1	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6664428	6664494	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6664495	6664595	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6664596	6664687	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6664596	6664687	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6664688	6664923	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6664924	6665001	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6664924	6665001	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6665002	6665096	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6665097	6665234	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6665097	6665234	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6665235	6665350	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6665351	6665486	0.87	-	1	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6665351	6665486	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6665487	6665624	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6665625	6665820	1	-	2	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6665625	6665820	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6665821	6665994	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6665995	6666160	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6665995	6666160	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6666161	6666253	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6666254	6666360	1	-	2	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6666254	6666360	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6666361	6666439	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6666440	6666553	1	-	2	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6666440	6666553	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6666554	6666669	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6666670	6666904	1	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6666670	6666904	.	-	.	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	start_codon	6666902	6666904	.	-	0	transcript_id "Ledus.S4G092200.t1"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	transcript	6660121	6666904	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	stop_codon	6660118	6660120	.	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6660121	6660199	1	-	1	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6660121	6660199	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6660200	6660295	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6660296	6660383	1	-	2	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6660296	6660383	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6660384	6660470	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6660471	6660544	1	-	1	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6660471	6660544	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6660545	6660677	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6660678	6660838	0.88	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6660678	6660838	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6660839	6660957	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6660958	6661047	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6660958	6661047	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6661048	6661135	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6661136	6661210	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6661136	6661210	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6661211	6661288	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6661289	6661360	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6661289	6661360	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6661361	6661489	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6661490	6661662	1	-	2	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6661490	6661662	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6661663	6661826	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6661827	6661941	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6661827	6661941	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6661942	6662084	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6662085	6662198	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6662085	6662198	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6662199	6662285	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6662286	6662365	1	-	2	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6662286	6662365	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6662366	6662453	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6662454	6662541	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6662454	6662541	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6662542	6662639	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6662640	6662696	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6662640	6662696	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6662697	6662794	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6662795	6662860	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6662795	6662860	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6662861	6662983	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6662984	6663079	0.97	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6662984	6663079	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6663080	6663176	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6663177	6663284	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6663177	6663284	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6663285	6663442	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6663443	6663541	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6663443	6663541	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6663542	6663683	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6663684	6663803	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6663684	6663803	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6663804	6663989	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6663990	6664076	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6663990	6664076	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6664077	6664214	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6664215	6664286	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6664215	6664286	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6664287	6664427	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6664428	6664494	1	-	1	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6664428	6664494	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6664495	6664595	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6664596	6664687	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6664596	6664687	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6664688	6664923	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6664924	6665001	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6664924	6665001	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6665002	6665096	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6665097	6665234	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6665097	6665234	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6665235	6665350	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6665351	6665531	0.84	-	1	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6665351	6665531	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6665532	6665624	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6665625	6665820	1	-	2	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6665625	6665820	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6665821	6665994	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6665995	6666160	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6665995	6666160	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6666161	6666253	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6666254	6666360	1	-	2	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6666254	6666360	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6666361	6666439	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6666440	6666553	1	-	2	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6666440	6666553	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	intron	6666554	6666669	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	CDS	6666670	6666904	1	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	exon	6666670	6666904	.	-	.	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
Ledus.S4	AUGUSTUS	start_codon	6666902	6666904	.	-	0	transcript_id "Ledus.S4G092200.t2"; gene_id "Ledus.S4G092200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7236.t1 is derived from g11907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	187104	187912	.	-	.	Ledus.S5G001400
Ledus.S5	AUGUSTUS	transcript	187104	187912	.	-	.	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	stop_codon	187101	187103	.	-	0	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	CDS	187104	187227	1	-	1	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	exon	187104	187227	.	-	.	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	intron	187228	187322	.	-	.	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	CDS	187323	187351	1	-	0	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	exon	187323	187351	.	-	.	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	intron	187352	187496	.	-	.	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	CDS	187497	187598	1	-	0	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	exon	187497	187598	.	-	.	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	intron	187599	187909	.	-	.	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	CDS	187910	187912	1	-	0	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	exon	187910	187912	.	-	.	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
Ledus.S5	AUGUSTUS	start_codon	187910	187912	.	-	0	transcript_id "Ledus.S5G001400.t1"; gene_id "Ledus.S5G001400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9477.t1 is derived from g10507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7246838	7248608	.	+	.	Ledus.S3G095400
Ledus.S3	AUGUSTUS	transcript	7246838	7248608	.	+	.	transcript_id "Ledus.S3G095400.t1"; gene_id "Ledus.S3G095400"
Ledus.S3	AUGUSTUS	start_codon	7246838	7246840	.	+	0	transcript_id "Ledus.S3G095400.t1"; gene_id "Ledus.S3G095400"
Ledus.S3	AUGUSTUS	CDS	7246838	7246939	0.75	+	0	transcript_id "Ledus.S3G095400.t1"; gene_id "Ledus.S3G095400"
Ledus.S3	AUGUSTUS	exon	7246838	7246939	.	+	.	transcript_id "Ledus.S3G095400.t1"; gene_id "Ledus.S3G095400"
Ledus.S3	AUGUSTUS	intron	7246940	7247039	.	+	.	transcript_id "Ledus.S3G095400.t1"; gene_id "Ledus.S3G095400"
Ledus.S3	AUGUSTUS	CDS	7247040	7248608	0.93	+	0	transcript_id "Ledus.S3G095400.t1"; gene_id "Ledus.S3G095400"
Ledus.S3	AUGUSTUS	exon	7247040	7248608	.	+	.	transcript_id "Ledus.S3G095400.t1"; gene_id "Ledus.S3G095400"
Ledus.S3	AUGUSTUS	stop_codon	7248609	7248611	.	+	0	transcript_id "Ledus.S3G095400.t1"; gene_id "Ledus.S3G095400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1336.t1 is derived from g8197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9313367	9313654	.	-	.	Ledus.S2G121800
Ledus.S2	AUGUSTUS	transcript	9313367	9313654	.	-	.	transcript_id "Ledus.S2G121800.t1"; gene_id "Ledus.S2G121800"
Ledus.S2	AUGUSTUS	stop_codon	9313364	9313366	.	-	0	transcript_id "Ledus.S2G121800.t1"; gene_id "Ledus.S2G121800"
Ledus.S2	AUGUSTUS	CDS	9313367	9313654	1	-	0	transcript_id "Ledus.S2G121800.t1"; gene_id "Ledus.S2G121800"
Ledus.S2	AUGUSTUS	exon	9313367	9313654	.	-	.	transcript_id "Ledus.S2G121800.t1"; gene_id "Ledus.S2G121800"
Ledus.S2	AUGUSTUS	start_codon	9313652	9313654	.	-	0	transcript_id "Ledus.S2G121800.t1"; gene_id "Ledus.S2G121800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4554.t1 is derived from g1991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17659913	17660953	.	+	.	Ledus.S1G197500
Ledus.S1	AUGUSTUS	transcript	17659913	17660953	.	+	.	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	start_codon	17659913	17659915	.	+	0	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	CDS	17659913	17660151	0.66	+	0	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	exon	17659913	17660151	.	+	.	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	intron	17660152	17660233	.	+	.	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	CDS	17660234	17660334	1	+	1	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	exon	17660234	17660334	.	+	.	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	intron	17660335	17660411	.	+	.	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	CDS	17660412	17660521	1	+	2	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	exon	17660412	17660521	.	+	.	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	intron	17660522	17660647	.	+	.	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	CDS	17660648	17660743	1	+	0	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	exon	17660648	17660743	.	+	.	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	intron	17660744	17660842	.	+	.	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	CDS	17660843	17660953	0.98	+	0	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	exon	17660843	17660953	.	+	.	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
Ledus.S1	AUGUSTUS	stop_codon	17660954	17660956	.	+	0	transcript_id "Ledus.S1G197500.t1"; gene_id "Ledus.S1G197500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6791.t1 is derived from g4235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34223639	34225775	.	+	.	Ledus.S1G421200
Ledus.S1	AUGUSTUS	transcript	34223639	34225775	.	+	.	transcript_id "Ledus.S1G421200.t1"; gene_id "Ledus.S1G421200"
Ledus.S1	AUGUSTUS	start_codon	34223639	34223641	.	+	0	transcript_id "Ledus.S1G421200.t1"; gene_id "Ledus.S1G421200"
Ledus.S1	AUGUSTUS	CDS	34223639	34224972	0.54	+	0	transcript_id "Ledus.S1G421200.t1"; gene_id "Ledus.S1G421200"
Ledus.S1	AUGUSTUS	exon	34223639	34224972	.	+	.	transcript_id "Ledus.S1G421200.t1"; gene_id "Ledus.S1G421200"
Ledus.S1	AUGUSTUS	intron	34224973	34225486	.	+	.	transcript_id "Ledus.S1G421200.t1"; gene_id "Ledus.S1G421200"
Ledus.S1	AUGUSTUS	CDS	34225487	34225775	0.81	+	1	transcript_id "Ledus.S1G421200.t1"; gene_id "Ledus.S1G421200"
Ledus.S1	AUGUSTUS	exon	34225487	34225775	.	+	.	transcript_id "Ledus.S1G421200.t1"; gene_id "Ledus.S1G421200"
Ledus.S1	AUGUSTUS	stop_codon	34225776	34225778	.	+	0	transcript_id "Ledus.S1G421200.t1"; gene_id "Ledus.S1G421200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4366.t1 is derived from g1802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16631159	16633300	.	-	.	Ledus.S1G178700
Ledus.S1	AUGUSTUS	transcript	16631159	16633300	.	-	.	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	stop_codon	16631156	16631158	.	-	0	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	CDS	16631159	16631311	1	-	0	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	exon	16631159	16631311	.	-	.	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	intron	16631312	16631402	.	-	.	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	CDS	16631403	16631558	1	-	0	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	exon	16631403	16631558	.	-	.	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	intron	16631559	16631651	.	-	.	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	CDS	16631652	16631937	0.99	-	1	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	exon	16631652	16631937	.	-	.	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	intron	16631938	16632043	.	-	.	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	CDS	16632044	16632471	0.97	-	0	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	exon	16632044	16632471	.	-	.	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	intron	16632472	16632560	.	-	.	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	CDS	16632561	16632918	1	-	1	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	exon	16632561	16632918	.	-	.	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	intron	16632919	16633013	.	-	.	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	CDS	16633014	16633300	1	-	0	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	exon	16633014	16633300	.	-	.	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
Ledus.S1	AUGUSTUS	start_codon	16633298	16633300	.	-	0	transcript_id "Ledus.S1G178700.t1"; gene_id "Ledus.S1G178700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7985.t1 is derived from g12656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8347634	8349542	.	-	.	Ledus.S5G076300
Ledus.S5	AUGUSTUS	transcript	8347634	8349542	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	stop_codon	8347631	8347633	.	-	0	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	CDS	8347634	8347690	1	-	0	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	exon	8347634	8347690	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	intron	8347691	8347815	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	CDS	8347816	8348073	1	-	0	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	exon	8347816	8348073	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	intron	8348074	8348160	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	CDS	8348161	8348268	1	-	0	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	exon	8348161	8348268	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	intron	8348269	8348347	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	CDS	8348348	8348443	1	-	0	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	exon	8348348	8348443	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	intron	8348444	8348517	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	CDS	8348518	8348958	1	-	0	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	exon	8348518	8348958	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	intron	8348959	8349050	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	CDS	8349051	8349300	1	-	1	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	exon	8349051	8349300	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	intron	8349301	8349408	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	CDS	8349409	8349542	1	-	0	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	exon	8349409	8349542	.	-	.	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
Ledus.S5	AUGUSTUS	start_codon	8349540	8349542	.	-	0	transcript_id "Ledus.S5G076300.t1"; gene_id "Ledus.S5G076300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4906.t1 is derived from g2344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20595547	20595873	.	-	.	Ledus.S1G232700
Ledus.S1	AUGUSTUS	transcript	20595547	20595873	.	-	.	transcript_id "Ledus.S1G232700.t1"; gene_id "Ledus.S1G232700"
Ledus.S1	AUGUSTUS	stop_codon	20595544	20595546	.	-	0	transcript_id "Ledus.S1G232700.t1"; gene_id "Ledus.S1G232700"
Ledus.S1	AUGUSTUS	CDS	20595547	20595873	0.61	-	0	transcript_id "Ledus.S1G232700.t1"; gene_id "Ledus.S1G232700"
Ledus.S1	AUGUSTUS	exon	20595547	20595873	.	-	.	transcript_id "Ledus.S1G232700.t1"; gene_id "Ledus.S1G232700"
Ledus.S1	AUGUSTUS	start_codon	20595871	20595873	.	-	0	transcript_id "Ledus.S1G232700.t1"; gene_id "Ledus.S1G232700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3728.t1 is derived from g1164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11203583	11205238	.	+	.	Ledus.S1G114900
Ledus.S1	AUGUSTUS	transcript	11203583	11205238	.	+	.	transcript_id "Ledus.S1G114900.t1"; gene_id "Ledus.S1G114900"
Ledus.S1	AUGUSTUS	start_codon	11203583	11203585	.	+	0	transcript_id "Ledus.S1G114900.t1"; gene_id "Ledus.S1G114900"
Ledus.S1	AUGUSTUS	CDS	11203583	11205238	0.66	+	0	transcript_id "Ledus.S1G114900.t1"; gene_id "Ledus.S1G114900"
Ledus.S1	AUGUSTUS	exon	11203583	11205238	.	+	.	transcript_id "Ledus.S1G114900.t1"; gene_id "Ledus.S1G114900"
Ledus.S1	AUGUSTUS	stop_codon	11205239	11205241	.	+	0	transcript_id "Ledus.S1G114900.t1"; gene_id "Ledus.S1G114900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8946.t1 is derived from g9976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3382208	3383331	.	+	.	Ledus.S3G042300
Ledus.S3	AUGUSTUS	transcript	3382208	3383331	.	+	.	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	start_codon	3382208	3382210	.	+	0	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	CDS	3382208	3382460	0.62	+	0	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	exon	3382208	3382460	.	+	.	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	intron	3382461	3382535	.	+	.	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	CDS	3382536	3382723	0.58	+	2	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	exon	3382536	3382723	.	+	.	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	intron	3382724	3382879	.	+	.	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	CDS	3382880	3382976	1	+	0	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	exon	3382880	3382976	.	+	.	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	intron	3382977	3383060	.	+	.	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	CDS	3383061	3383133	1	+	2	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	exon	3383061	3383133	.	+	.	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	intron	3383134	3383210	.	+	.	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	CDS	3383211	3383331	1	+	1	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	exon	3383211	3383331	.	+	.	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
Ledus.S3	AUGUSTUS	stop_codon	3383332	3383334	.	+	0	transcript_id "Ledus.S3G042300.t1"; gene_id "Ledus.S3G042300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg395.t1 is derived from g7256.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2217689	2221919	.	+	.	Ledus.S2G027700
Ledus.S2	AUGUSTUS	transcript	2217689	2221919	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	start_codon	2217689	2217691	.	+	0	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2217689	2217779	0.99	+	0	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2217689	2217779	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2217780	2217863	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2217864	2218180	1	+	2	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2217864	2218180	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2218181	2218289	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2218290	2218561	1	+	0	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2218290	2218561	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2218562	2218646	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2218647	2218910	1	+	1	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2218647	2218910	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2218911	2219000	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219001	2219236	1	+	1	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219001	2219236	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219237	2219306	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219307	2219439	1	+	2	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219307	2219439	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219440	2219533	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219534	2219608	1	+	1	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219534	2219608	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219609	2219691	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219692	2219763	1	+	1	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219692	2219763	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219764	2219850	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219851	2219913	1	+	1	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219851	2219913	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219914	2219997	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219998	2220069	1	+	1	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219998	2220069	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2220070	2220133	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2220134	2220384	1	+	1	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2220134	2220384	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2220385	2220472	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2220473	2220684	1	+	2	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2220473	2220684	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2220685	2220751	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2220752	2220878	1	+	0	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2220752	2220878	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2220879	2220976	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2220977	2221042	1	+	2	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2220977	2221042	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2221043	2221118	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2221119	2221299	1	+	2	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2221119	2221299	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2221300	2221395	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2221396	2221543	0.81	+	1	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2221396	2221543	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2221544	2221631	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2221632	2221919	1	+	0	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2221632	2221919	.	+	.	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	stop_codon	2221920	2221922	.	+	0	transcript_id "Ledus.S2G027700.t1"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	transcript	2217689	2221919	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	start_codon	2217689	2217691	.	+	0	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2217689	2217779	0.99	+	0	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2217689	2217779	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2217780	2217863	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2217864	2218180	1	+	2	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2217864	2218180	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2218181	2218289	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2218290	2218561	1	+	0	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2218290	2218561	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2218562	2218646	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2218647	2218910	1	+	1	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2218647	2218910	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2218911	2219003	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219004	2219236	1	+	1	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219004	2219236	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219237	2219306	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219307	2219439	1	+	2	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219307	2219439	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219440	2219533	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219534	2219608	1	+	1	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219534	2219608	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219609	2219691	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219692	2219763	1	+	1	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219692	2219763	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219764	2219850	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219851	2219913	1	+	1	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219851	2219913	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219914	2219997	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219998	2220069	1	+	1	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219998	2220069	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2220070	2220133	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2220134	2220384	1	+	1	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2220134	2220384	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2220385	2220472	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2220473	2220684	1	+	2	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2220473	2220684	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2220685	2220751	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2220752	2220878	1	+	0	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2220752	2220878	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2220879	2220976	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2220977	2221042	1	+	2	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2220977	2221042	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2221043	2221118	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2221119	2221299	1	+	2	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2221119	2221299	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2221300	2221395	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2221396	2221543	0.77	+	1	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2221396	2221543	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2221544	2221631	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2221632	2221919	1	+	0	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2221632	2221919	.	+	.	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	stop_codon	2221920	2221922	.	+	0	transcript_id "Ledus.S2G027700.t2"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	transcript	2217689	2221919	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	start_codon	2217689	2217691	.	+	0	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2217689	2217779	0.99	+	0	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2217689	2217779	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2217780	2217863	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2217864	2218180	1	+	2	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2217864	2218180	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2218181	2218289	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2218290	2218561	1	+	0	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2218290	2218561	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2218562	2218646	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2218647	2218910	1	+	1	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2218647	2218910	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2218911	2219000	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219001	2219236	0.64	+	1	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219001	2219236	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219237	2219306	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219307	2219439	1	+	2	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219307	2219439	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219440	2219533	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219534	2219608	1	+	1	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219534	2219608	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219609	2219691	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219692	2219763	1	+	1	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219692	2219763	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219764	2219850	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219851	2219913	1	+	1	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219851	2219913	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2219914	2219997	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2219998	2220069	1	+	1	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2219998	2220069	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2220070	2220133	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2220134	2220384	1	+	1	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2220134	2220384	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2220385	2220469	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2220470	2220684	1	+	2	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2220470	2220684	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2220685	2220751	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2220752	2220878	1	+	0	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2220752	2220878	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2220879	2220976	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2220977	2221042	1	+	2	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2220977	2221042	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2221043	2221118	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2221119	2221299	1	+	2	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2221119	2221299	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2221300	2221395	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2221396	2221543	0.73	+	1	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2221396	2221543	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	intron	2221544	2221631	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	CDS	2221632	2221919	0.99	+	0	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	exon	2221632	2221919	.	+	.	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
Ledus.S2	AUGUSTUS	stop_codon	2221920	2221922	.	+	0	transcript_id "Ledus.S2G027700.t3"; gene_id "Ledus.S2G027700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9972.t1 is derived from g11002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11622800	11623654	.	+	.	Ledus.S3G144900
Ledus.S3	AUGUSTUS	transcript	11622800	11623654	.	+	.	transcript_id "Ledus.S3G144900.t1"; gene_id "Ledus.S3G144900"
Ledus.S3	AUGUSTUS	start_codon	11622800	11622802	.	+	0	transcript_id "Ledus.S3G144900.t1"; gene_id "Ledus.S3G144900"
Ledus.S3	AUGUSTUS	CDS	11622800	11622856	0.73	+	0	transcript_id "Ledus.S3G144900.t1"; gene_id "Ledus.S3G144900"
Ledus.S3	AUGUSTUS	exon	11622800	11622856	.	+	.	transcript_id "Ledus.S3G144900.t1"; gene_id "Ledus.S3G144900"
Ledus.S3	AUGUSTUS	intron	11622857	11622934	.	+	.	transcript_id "Ledus.S3G144900.t1"; gene_id "Ledus.S3G144900"
Ledus.S3	AUGUSTUS	CDS	11622935	11623654	0.74	+	0	transcript_id "Ledus.S3G144900.t1"; gene_id "Ledus.S3G144900"
Ledus.S3	AUGUSTUS	exon	11622935	11623654	.	+	.	transcript_id "Ledus.S3G144900.t1"; gene_id "Ledus.S3G144900"
Ledus.S3	AUGUSTUS	stop_codon	11623655	11623657	.	+	0	transcript_id "Ledus.S3G144900.t1"; gene_id "Ledus.S3G144900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8072.t1 is derived from g12743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9044171	9044887	.	+	.	Ledus.S5G085000
Ledus.S5	AUGUSTUS	transcript	9044171	9044887	.	+	.	transcript_id "Ledus.S5G085000.t1"; gene_id "Ledus.S5G085000"
Ledus.S5	AUGUSTUS	start_codon	9044171	9044173	.	+	0	transcript_id "Ledus.S5G085000.t1"; gene_id "Ledus.S5G085000"
Ledus.S5	AUGUSTUS	CDS	9044171	9044887	0.65	+	0	transcript_id "Ledus.S5G085000.t1"; gene_id "Ledus.S5G085000"
Ledus.S5	AUGUSTUS	exon	9044171	9044887	.	+	.	transcript_id "Ledus.S5G085000.t1"; gene_id "Ledus.S5G085000"
Ledus.S5	AUGUSTUS	stop_codon	9044888	9044890	.	+	0	transcript_id "Ledus.S5G085000.t1"; gene_id "Ledus.S5G085000"
# This transcript jg1935.t2 is derived from g8798.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1936.t1 is derived from g8799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13590284	13592158	.	+	.	Ledus.S2G181800
Ledus.S2	AUGUSTUS	transcript	13590284	13592158	.	+	.	transcript_id "Ledus.S2G181800.t1"; gene_id "Ledus.S2G181800"
Ledus.S2	AUGUSTUS	start_codon	13590284	13590286	.	+	0	transcript_id "Ledus.S2G181800.t1"; gene_id "Ledus.S2G181800"
Ledus.S2	AUGUSTUS	CDS	13590284	13592158	1	+	0	transcript_id "Ledus.S2G181800.t1"; gene_id "Ledus.S2G181800"
Ledus.S2	AUGUSTUS	exon	13590284	13592158	.	+	.	transcript_id "Ledus.S2G181800.t1"; gene_id "Ledus.S2G181800"
Ledus.S2	AUGUSTUS	stop_codon	13592159	13592161	.	+	0	transcript_id "Ledus.S2G181800.t1"; gene_id "Ledus.S2G181800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1653.t1 is derived from g8514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11710924	11712225	.	+	.	Ledus.S2G153500
Ledus.S2	AUGUSTUS	transcript	11710924	11712225	.	+	.	transcript_id "Ledus.S2G153500.t1"; gene_id "Ledus.S2G153500"
Ledus.S2	AUGUSTUS	start_codon	11710924	11710926	.	+	0	transcript_id "Ledus.S2G153500.t1"; gene_id "Ledus.S2G153500"
Ledus.S2	AUGUSTUS	CDS	11710924	11710936	0.55	+	0	transcript_id "Ledus.S2G153500.t1"; gene_id "Ledus.S2G153500"
Ledus.S2	AUGUSTUS	exon	11710924	11710936	.	+	.	transcript_id "Ledus.S2G153500.t1"; gene_id "Ledus.S2G153500"
Ledus.S2	AUGUSTUS	intron	11710937	11711087	.	+	.	transcript_id "Ledus.S2G153500.t1"; gene_id "Ledus.S2G153500"
Ledus.S2	AUGUSTUS	CDS	11711088	11711268	0.47	+	2	transcript_id "Ledus.S2G153500.t1"; gene_id "Ledus.S2G153500"
Ledus.S2	AUGUSTUS	exon	11711088	11711268	.	+	.	transcript_id "Ledus.S2G153500.t1"; gene_id "Ledus.S2G153500"
Ledus.S2	AUGUSTUS	intron	11711269	11711714	.	+	.	transcript_id "Ledus.S2G153500.t1"; gene_id "Ledus.S2G153500"
Ledus.S2	AUGUSTUS	CDS	11711715	11712225	0.26	+	1	transcript_id "Ledus.S2G153500.t1"; gene_id "Ledus.S2G153500"
Ledus.S2	AUGUSTUS	exon	11711715	11712225	.	+	.	transcript_id "Ledus.S2G153500.t1"; gene_id "Ledus.S2G153500"
Ledus.S2	AUGUSTUS	stop_codon	11712226	11712228	.	+	0	transcript_id "Ledus.S2G153500.t1"; gene_id "Ledus.S2G153500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3343.t1 is derived from g778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7611685	7612209	.	-	.	Ledus.S1G076400
Ledus.S1	AUGUSTUS	transcript	7611685	7612209	.	-	.	transcript_id "Ledus.S1G076400.t1"; gene_id "Ledus.S1G076400"
Ledus.S1	AUGUSTUS	stop_codon	7611682	7611684	.	-	0	transcript_id "Ledus.S1G076400.t1"; gene_id "Ledus.S1G076400"
Ledus.S1	AUGUSTUS	CDS	7611685	7612209	0.98	-	0	transcript_id "Ledus.S1G076400.t1"; gene_id "Ledus.S1G076400"
Ledus.S1	AUGUSTUS	exon	7611685	7612209	.	-	.	transcript_id "Ledus.S1G076400.t1"; gene_id "Ledus.S1G076400"
Ledus.S1	AUGUSTUS	start_codon	7612207	7612209	.	-	0	transcript_id "Ledus.S1G076400.t1"; gene_id "Ledus.S1G076400"
# This transcript jg10515.t2 is derived from g11545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10516.t1 is derived from g11546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15771919	15772197	.	-	.	Ledus.S3G199300
Ledus.S3	AUGUSTUS	transcript	15771919	15772197	.	-	.	transcript_id "Ledus.S3G199300.t1"; gene_id "Ledus.S3G199300"
Ledus.S3	AUGUSTUS	stop_codon	15771916	15771918	.	-	0	transcript_id "Ledus.S3G199300.t1"; gene_id "Ledus.S3G199300"
Ledus.S3	AUGUSTUS	CDS	15771919	15772197	0.99	-	0	transcript_id "Ledus.S3G199300.t1"; gene_id "Ledus.S3G199300"
Ledus.S3	AUGUSTUS	exon	15771919	15772197	.	-	.	transcript_id "Ledus.S3G199300.t1"; gene_id "Ledus.S3G199300"
Ledus.S3	AUGUSTUS	start_codon	15772195	15772197	.	-	0	transcript_id "Ledus.S3G199300.t1"; gene_id "Ledus.S3G199300"
# This transcript jg3674.t2 is derived from g1110.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3675.t1 is derived from g1111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10618801	10621492	.	-	.	Ledus.S1G109600
Ledus.S1	AUGUSTUS	transcript	10618801	10621492	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	stop_codon	10618798	10618800	.	-	0	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	CDS	10618801	10618898	1	-	2	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	exon	10618801	10618898	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	intron	10618899	10618985	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	CDS	10618986	10619043	1	-	0	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	exon	10618986	10619043	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	intron	10619044	10619180	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	CDS	10619181	10619345	1	-	0	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	exon	10619181	10619345	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	intron	10619346	10619473	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	CDS	10619474	10619590	1	-	0	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	exon	10619474	10619590	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	intron	10619591	10619802	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	CDS	10619803	10619943	1	-	0	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	exon	10619803	10619943	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	intron	10619944	10620137	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	CDS	10620138	10620202	1	-	2	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	exon	10620138	10620202	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	intron	10620203	10620281	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	CDS	10620282	10620362	1	-	2	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	exon	10620282	10620362	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	intron	10620363	10620481	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	CDS	10620482	10620569	1	-	0	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	exon	10620482	10620569	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	intron	10620570	10620662	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	CDS	10620663	10620845	1	-	0	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	exon	10620663	10620845	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	intron	10620846	10621000	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	CDS	10621001	10621061	1	-	1	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	exon	10621001	10621061	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	intron	10621062	10621367	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	CDS	10621368	10621492	0.57	-	0	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	exon	10621368	10621492	.	-	.	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
Ledus.S1	AUGUSTUS	start_codon	10621490	10621492	.	-	0	transcript_id "Ledus.S1G109600.t1"; gene_id "Ledus.S1G109600"
# This transcript jg12235.t2 is derived from g5855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12236.t1 is derived from g5856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10587244	10590042	.	-	.	Ledus.S4G139200
Ledus.S4	AUGUSTUS	transcript	10587244	10590042	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	stop_codon	10587241	10587243	.	-	0	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	CDS	10587244	10587381	0.9	-	0	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	exon	10587244	10587381	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	intron	10587382	10587612	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	CDS	10587613	10588137	0.91	-	0	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	exon	10587613	10588137	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	intron	10588138	10588261	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	CDS	10588262	10588401	1	-	2	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	exon	10588262	10588401	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	intron	10588402	10588579	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	CDS	10588580	10588922	0.47	-	0	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	exon	10588580	10588922	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	intron	10588923	10589005	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	CDS	10589006	10589116	0.96	-	0	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	exon	10589006	10589116	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	intron	10589117	10589233	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	CDS	10589234	10589332	1	-	0	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	exon	10589234	10589332	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	intron	10589333	10589425	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	CDS	10589426	10589536	1	-	0	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	exon	10589426	10589536	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	intron	10589537	10589886	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	CDS	10589887	10590042	1	-	0	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	exon	10589887	10590042	.	-	.	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
Ledus.S4	AUGUSTUS	start_codon	10590040	10590042	.	-	0	transcript_id "Ledus.S4G139200.t1"; gene_id "Ledus.S4G139200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2433.t1 is derived from g9296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18097474	18100210	.	+	.	Ledus.S2G231500
Ledus.S2	AUGUSTUS	transcript	18097474	18100210	.	+	.	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	start_codon	18097474	18097476	.	+	0	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	CDS	18097474	18098361	1	+	0	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	exon	18097474	18098361	.	+	.	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	intron	18098362	18098457	.	+	.	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	CDS	18098458	18098517	1	+	0	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	exon	18098458	18098517	.	+	.	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	intron	18098518	18098599	.	+	.	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	CDS	18098600	18098635	1	+	0	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	exon	18098600	18098635	.	+	.	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	intron	18098636	18098735	.	+	.	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	CDS	18098736	18099551	0.99	+	0	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	exon	18098736	18099551	.	+	.	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	intron	18099552	18099665	.	+	.	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	CDS	18099666	18099936	0.82	+	0	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	exon	18099666	18099936	.	+	.	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	intron	18099937	18100187	.	+	.	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	CDS	18100188	18100210	0.91	+	2	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	exon	18100188	18100210	.	+	.	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
Ledus.S2	AUGUSTUS	stop_codon	18100211	18100213	.	+	0	transcript_id "Ledus.S2G231500.t1"; gene_id "Ledus.S2G231500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11691.t1 is derived from g5310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6034307	6038894	.	+	.	Ledus.S4G084700
Ledus.S4	AUGUSTUS	transcript	6034307	6038894	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	start_codon	6034307	6034309	.	+	0	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6034307	6035092	0.77	+	0	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6034307	6035092	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6035093	6035204	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6035205	6035279	1	+	0	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6035205	6035279	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6035280	6035491	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6035492	6035530	1	+	0	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6035492	6035530	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6035531	6035619	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6035620	6035735	1	+	0	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6035620	6035735	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6035736	6035821	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6035822	6036461	0.95	+	1	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6035822	6036461	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6036462	6036641	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6036642	6036710	1	+	0	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6036642	6036710	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6036711	6036797	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6036798	6036880	1	+	0	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6036798	6036880	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6036881	6036973	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6036974	6037426	0.79	+	1	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6036974	6037426	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6037427	6037529	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6037530	6037636	0.97	+	1	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6037530	6037636	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6037637	6037772	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6037773	6038023	1	+	2	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6037773	6038023	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6038024	6038115	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6038116	6038498	1	+	0	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6038116	6038498	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6038499	6038587	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6038588	6038894	0.95	+	1	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6038588	6038894	.	+	.	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	stop_codon	6038895	6038897	.	+	0	transcript_id "Ledus.S4G084700.t1"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	transcript	6034307	6038894	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	start_codon	6034307	6034309	.	+	0	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6034307	6035092	0.82	+	0	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6034307	6035092	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6035093	6035233	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6035234	6035279	0.51	+	0	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6035234	6035279	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6035280	6035435	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6035436	6035530	1	+	2	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6035436	6035530	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6035531	6035619	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6035620	6035735	1	+	0	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6035620	6035735	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6035736	6035821	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6035822	6036461	0.99	+	1	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6035822	6036461	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6036462	6036641	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6036642	6036710	1	+	0	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6036642	6036710	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6036711	6036797	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6036798	6036880	1	+	0	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6036798	6036880	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6036881	6036973	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6036974	6037426	0.78	+	1	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6036974	6037426	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6037427	6037529	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6037530	6037636	0.98	+	1	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6037530	6037636	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6037637	6037772	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6037773	6038023	1	+	2	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6037773	6038023	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6038024	6038115	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6038116	6038498	1	+	0	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6038116	6038498	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	intron	6038499	6038587	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	CDS	6038588	6038894	0.9	+	1	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	exon	6038588	6038894	.	+	.	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
Ledus.S4	AUGUSTUS	stop_codon	6038895	6038897	.	+	0	transcript_id "Ledus.S4G084700.t2"; gene_id "Ledus.S4G084700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3377.t1 is derived from g812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7955138	7959332	.	-	.	Ledus.S1G079800
Ledus.S1	AUGUSTUS	transcript	7955138	7959332	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	stop_codon	7955135	7955137	.	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7955138	7955233	1	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7955138	7955233	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7955234	7955330	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7955331	7955399	1	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7955331	7955399	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7955400	7955477	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7955478	7955564	1	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7955478	7955564	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7955565	7955723	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7955724	7955870	1	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7955724	7955870	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7955871	7955990	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7955991	7956131	1	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7955991	7956131	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7956132	7956221	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7956222	7956383	1	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7956222	7956383	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7956384	7956499	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7956500	7956751	1	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7956500	7956751	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7956752	7956896	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7956897	7956939	1	-	1	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7956897	7956939	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7956940	7957042	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7957043	7957103	1	-	2	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7957043	7957103	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7957104	7957263	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7957264	7957369	1	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7957264	7957369	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7957370	7957448	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7957449	7957565	1	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7957449	7957565	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7957566	7957672	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7957673	7957753	0.98	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7957673	7957753	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7957754	7957886	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7957887	7957929	1	-	1	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7957887	7957929	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7957930	7958057	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7958058	7958119	1	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7958058	7958119	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7958120	7958233	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7958234	7958320	1	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7958234	7958320	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7958321	7958417	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7958418	7958464	1	-	2	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7958418	7958464	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7958465	7958563	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7958564	7958696	0.99	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7958564	7958696	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7958697	7958798	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7958799	7958867	0.99	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7958799	7958867	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7958868	7959017	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7959018	7959104	1	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7959018	7959104	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	intron	7959105	7959200	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	CDS	7959201	7959332	0.94	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	exon	7959201	7959332	.	-	.	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
Ledus.S1	AUGUSTUS	start_codon	7959330	7959332	.	-	0	transcript_id "Ledus.S1G079800.t1"; gene_id "Ledus.S1G079800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9228.t1 is derived from g10258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5512439	5513595	.	-	.	Ledus.S3G070500
Ledus.S3	AUGUSTUS	transcript	5512439	5513595	.	-	.	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	stop_codon	5512436	5512438	.	-	0	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	CDS	5512439	5512609	0.7	-	0	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	exon	5512439	5512609	.	-	.	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	intron	5512610	5512698	.	-	.	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	CDS	5512699	5512776	1	-	0	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	exon	5512699	5512776	.	-	.	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	intron	5512777	5512864	.	-	.	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	CDS	5512865	5513020	1	-	0	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	exon	5512865	5513020	.	-	.	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	intron	5513021	5513114	.	-	.	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	CDS	5513115	5513294	1	-	0	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	exon	5513115	5513294	.	-	.	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	intron	5513295	5513472	.	-	.	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	CDS	5513473	5513595	0.85	-	0	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	exon	5513473	5513595	.	-	.	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
Ledus.S3	AUGUSTUS	start_codon	5513593	5513595	.	-	0	transcript_id "Ledus.S3G070500.t1"; gene_id "Ledus.S3G070500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5596.t1 is derived from g3035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25313548	25314472	.	-	.	Ledus.S1G301700
Ledus.S1	AUGUSTUS	transcript	25313548	25314472	.	-	.	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	stop_codon	25313545	25313547	.	-	0	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	CDS	25313548	25313565	0.58	-	0	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	exon	25313548	25313565	.	-	.	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	intron	25313566	25313706	.	-	.	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	CDS	25313707	25313716	0.58	-	1	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	exon	25313707	25313716	.	-	.	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	intron	25313717	25313829	.	-	.	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	CDS	25313830	25313941	0.3	-	2	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	exon	25313830	25313941	.	-	.	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	intron	25313942	25314021	.	-	.	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	CDS	25314022	25314472	0.54	-	0	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	exon	25314022	25314472	.	-	.	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
Ledus.S1	AUGUSTUS	start_codon	25314470	25314472	.	-	0	transcript_id "Ledus.S1G301700.t1"; gene_id "Ledus.S1G301700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3042.t1 is derived from g477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5468716	5479239	.	+	.	Ledus.S1G046300
Ledus.S1	AUGUSTUS	transcript	5468716	5479239	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	start_codon	5468716	5468718	.	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5468716	5468849	1	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5468716	5468849	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5468850	5469156	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5469157	5469407	1	+	1	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5469157	5469407	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5469408	5469703	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5469704	5469886	1	+	2	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5469704	5469886	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5469887	5470029	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5470030	5470165	1	+	2	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5470030	5470165	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5470166	5470265	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5470266	5470396	0.98	+	1	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5470266	5470396	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5470397	5470527	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5470528	5470642	1	+	2	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5470528	5470642	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5470643	5470781	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5470782	5471847	0.92	+	1	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5470782	5471847	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5471848	5471956	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5471957	5472067	0.89	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5471957	5472067	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5472068	5472199	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5472200	5472258	1	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5472200	5472258	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5472259	5472436	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5472437	5472614	1	+	1	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5472437	5472614	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5472615	5472803	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5472804	5473077	0.98	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5472804	5473077	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5473078	5473198	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5473199	5473349	1	+	2	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5473199	5473349	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5473350	5473469	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5473470	5473581	1	+	1	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5473470	5473581	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5473582	5473704	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5473705	5473870	1	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5473705	5473870	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5473871	5474006	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5474007	5474077	1	+	2	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5474007	5474077	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5474078	5474177	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5474178	5474269	1	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5474178	5474269	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5474270	5474372	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5474373	5474535	1	+	1	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5474373	5474535	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5474536	5474668	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5474669	5474740	1	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5474669	5474740	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5474741	5474893	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5474894	5475262	0.95	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5474894	5475262	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5475263	5475366	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5475367	5475482	1	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5475367	5475482	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5475483	5475575	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5475576	5475873	0.77	+	1	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5475576	5475873	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5475874	5475982	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5475983	5476299	0.97	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5475983	5476299	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5476300	5476471	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5476472	5476817	0.99	+	1	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5476472	5476817	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5476818	5476896	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5476897	5477226	1	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5476897	5477226	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5477227	5477348	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5477349	5477453	1	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5477349	5477453	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5477454	5477594	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5477595	5477723	1	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5477595	5477723	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5477724	5477848	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5477849	5478229	0.99	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5477849	5478229	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5478230	5478333	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5478334	5478471	1	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5478334	5478471	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5478472	5478606	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5478607	5478843	1	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5478607	5478843	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	intron	5478844	5478933	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	CDS	5478934	5479239	0.97	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	exon	5478934	5479239	.	+	.	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
Ledus.S1	AUGUSTUS	stop_codon	5479240	5479242	.	+	0	transcript_id "Ledus.S1G046300.t1"; gene_id "Ledus.S1G046300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6330.t1 is derived from g3773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30517140	30517702	.	-	.	Ledus.S1G375100
Ledus.S1	AUGUSTUS	transcript	30517140	30517702	.	-	.	transcript_id "Ledus.S1G375100.t1"; gene_id "Ledus.S1G375100"
Ledus.S1	AUGUSTUS	stop_codon	30517137	30517139	.	-	0	transcript_id "Ledus.S1G375100.t1"; gene_id "Ledus.S1G375100"
Ledus.S1	AUGUSTUS	CDS	30517140	30517318	0.86	-	2	transcript_id "Ledus.S1G375100.t1"; gene_id "Ledus.S1G375100"
Ledus.S1	AUGUSTUS	exon	30517140	30517318	.	-	.	transcript_id "Ledus.S1G375100.t1"; gene_id "Ledus.S1G375100"
Ledus.S1	AUGUSTUS	intron	30517319	30517593	.	-	.	transcript_id "Ledus.S1G375100.t1"; gene_id "Ledus.S1G375100"
Ledus.S1	AUGUSTUS	CDS	30517594	30517702	0.41	-	0	transcript_id "Ledus.S1G375100.t1"; gene_id "Ledus.S1G375100"
Ledus.S1	AUGUSTUS	exon	30517594	30517702	.	-	.	transcript_id "Ledus.S1G375100.t1"; gene_id "Ledus.S1G375100"
Ledus.S1	AUGUSTUS	start_codon	30517700	30517702	.	-	0	transcript_id "Ledus.S1G375100.t1"; gene_id "Ledus.S1G375100"
# This transcript jg6653.t2 is derived from g4096.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6653.t3 is derived from g4096.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6654.t1 is derived from g4097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32905063	32906886	.	-	.	Ledus.S1G407500
Ledus.S1	AUGUSTUS	transcript	32905063	32906886	.	-	.	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	stop_codon	32905060	32905062	.	-	0	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	CDS	32905063	32905218	0.98	-	0	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	exon	32905063	32905218	.	-	.	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	intron	32905219	32905398	.	-	.	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	CDS	32905399	32905521	0.98	-	0	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	exon	32905399	32905521	.	-	.	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	intron	32905522	32905682	.	-	.	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	CDS	32905683	32905736	1	-	0	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	exon	32905683	32905736	.	-	.	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	intron	32905737	32906063	.	-	.	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	CDS	32906064	32906671	0.92	-	2	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	exon	32906064	32906671	.	-	.	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	intron	32906672	32906747	.	-	.	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	CDS	32906748	32906886	0.9	-	0	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	exon	32906748	32906886	.	-	.	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
Ledus.S1	AUGUSTUS	start_codon	32906884	32906886	.	-	0	transcript_id "Ledus.S1G407500.t1"; gene_id "Ledus.S1G407500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg47.t1 is derived from g9460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	98556	100545	.	-	.	Ledus.C8G000700
Ledus.C8	AUGUSTUS	transcript	98556	100545	.	-	.	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	stop_codon	98553	98555	.	-	0	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	CDS	98556	98674	0.87	-	2	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	exon	98556	98674	.	-	.	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	intron	98675	98762	.	-	.	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	CDS	98763	98804	0.26	-	2	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	exon	98763	98804	.	-	.	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	intron	98805	98850	.	-	.	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	CDS	98851	99070	0.25	-	0	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	exon	98851	99070	.	-	.	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	intron	99071	99144	.	-	.	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	CDS	99145	99546	0.28	-	0	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	exon	99145	99546	.	-	.	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	intron	99547	99631	.	-	.	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	CDS	99632	99652	0.64	-	0	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	exon	99632	99652	.	-	.	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	intron	99653	100179	.	-	.	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	CDS	100180	100545	0.66	-	0	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	exon	100180	100545	.	-	.	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
Ledus.C8	AUGUSTUS	start_codon	100543	100545	.	-	0	transcript_id "Ledus.C8G000700.t1"; gene_id "Ledus.C8G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4543.t1 is derived from g1980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17598462	17602243	.	+	.	Ledus.S1G196400
Ledus.S1	AUGUSTUS	transcript	17598462	17602243	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	start_codon	17598462	17598464	.	+	0	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17598462	17598507	0.95	+	0	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17598462	17598507	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17598508	17598827	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17598828	17598928	1	+	2	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17598828	17598928	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17598929	17599021	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17599022	17599078	1	+	0	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17599022	17599078	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17599079	17599157	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17599158	17599223	0.99	+	0	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17599158	17599223	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17599224	17599327	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17599328	17599461	1	+	0	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17599328	17599461	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17599462	17599584	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17599585	17599654	1	+	1	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17599585	17599654	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17599655	17599741	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17599742	17599865	1	+	0	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17599742	17599865	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17599866	17600010	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17600011	17600142	1	+	2	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17600011	17600142	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17600143	17600338	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17600339	17600409	1	+	2	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17600339	17600409	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17600410	17600550	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17600551	17600610	1	+	0	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17600551	17600610	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17600611	17600700	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17600701	17600756	1	+	0	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17600701	17600756	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17600757	17600891	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17600892	17600952	1	+	1	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17600892	17600952	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17600953	17601042	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17601043	17601172	0.55	+	0	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17601043	17601172	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17601173	17601377	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17601378	17601424	0.63	+	2	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17601378	17601424	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17601425	17601510	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17601511	17601597	0.48	+	0	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17601511	17601597	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17601598	17601727	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17601728	17602020	1	+	0	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17601728	17602020	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	intron	17602021	17602104	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	CDS	17602105	17602243	0.98	+	1	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	exon	17602105	17602243	.	+	.	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
Ledus.S1	AUGUSTUS	stop_codon	17602244	17602246	.	+	0	transcript_id "Ledus.S1G196400.t1"; gene_id "Ledus.S1G196400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12404.t1 is derived from g6025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11681327	11685323	.	-	.	Ledus.S4G156000
Ledus.S4	AUGUSTUS	transcript	11681327	11685323	.	-	.	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	stop_codon	11681324	11681326	.	-	0	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	CDS	11681327	11681340	0.58	-	2	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	exon	11681327	11681340	.	-	.	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	intron	11681341	11681413	.	-	.	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	CDS	11681414	11682907	0.63	-	2	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	exon	11681414	11682907	.	-	.	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	intron	11682908	11683246	.	-	.	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	CDS	11683247	11683382	1	-	0	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	exon	11683247	11683382	.	-	.	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	intron	11683383	11683696	.	-	.	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	CDS	11683697	11684296	1	-	0	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	exon	11683697	11684296	.	-	.	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	intron	11684297	11684380	.	-	.	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	CDS	11684381	11684964	1	-	2	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	exon	11684381	11684964	.	-	.	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	intron	11684965	11685166	.	-	.	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	CDS	11685167	11685323	0.52	-	0	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	exon	11685167	11685323	.	-	.	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
Ledus.S4	AUGUSTUS	start_codon	11685321	11685323	.	-	0	transcript_id "Ledus.S4G156000.t1"; gene_id "Ledus.S4G156000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6285.t1 is derived from g3728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30118703	30120847	.	-	.	Ledus.S1G370600
Ledus.S1	AUGUSTUS	transcript	30118703	30120847	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	stop_codon	30118700	30118702	.	-	0	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	CDS	30118703	30118924	0.99	-	0	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	exon	30118703	30118924	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	intron	30118925	30119013	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	CDS	30119014	30119139	1	-	0	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	exon	30119014	30119139	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	intron	30119140	30119226	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	CDS	30119227	30119331	1	-	0	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	exon	30119227	30119331	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	intron	30119332	30119456	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	CDS	30119457	30119620	1	-	2	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	exon	30119457	30119620	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	intron	30119621	30119703	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	CDS	30119704	30119902	1	-	0	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	exon	30119704	30119902	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	intron	30119903	30120081	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	CDS	30120082	30120275	1	-	2	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	exon	30120082	30120275	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	intron	30120276	30120436	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	CDS	30120437	30120616	0.51	-	2	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	exon	30120437	30120616	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	intron	30120617	30120747	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	CDS	30120748	30120847	0.44	-	0	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	exon	30120748	30120847	.	-	.	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
Ledus.S1	AUGUSTUS	start_codon	30120845	30120847	.	-	0	transcript_id "Ledus.S1G370600.t1"; gene_id "Ledus.S1G370600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1102.t1 is derived from g7963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7528631	7530489	.	+	.	Ledus.S2G098400
Ledus.S2	AUGUSTUS	transcript	7528631	7530489	.	+	.	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	start_codon	7528631	7528633	.	+	0	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	CDS	7528631	7528763	0.83	+	0	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	exon	7528631	7528763	.	+	.	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	intron	7528764	7528842	.	+	.	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	CDS	7528843	7529162	1	+	2	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	exon	7528843	7529162	.	+	.	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	intron	7529163	7529238	.	+	.	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	CDS	7529239	7529865	1	+	0	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	exon	7529239	7529865	.	+	.	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	intron	7529866	7529988	.	+	.	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	CDS	7529989	7530489	1	+	0	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	exon	7529989	7530489	.	+	.	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
Ledus.S2	AUGUSTUS	stop_codon	7530490	7530492	.	+	0	transcript_id "Ledus.S2G098400.t1"; gene_id "Ledus.S2G098400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg832.t1 is derived from g7693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5459812	5460171	.	+	.	Ledus.S2G071400
Ledus.S2	AUGUSTUS	transcript	5459812	5460171	.	+	.	transcript_id "Ledus.S2G071400.t1"; gene_id "Ledus.S2G071400"
Ledus.S2	AUGUSTUS	start_codon	5459812	5459814	.	+	0	transcript_id "Ledus.S2G071400.t1"; gene_id "Ledus.S2G071400"
Ledus.S2	AUGUSTUS	CDS	5459812	5460171	0.38	+	0	transcript_id "Ledus.S2G071400.t1"; gene_id "Ledus.S2G071400"
Ledus.S2	AUGUSTUS	exon	5459812	5460171	.	+	.	transcript_id "Ledus.S2G071400.t1"; gene_id "Ledus.S2G071400"
Ledus.S2	AUGUSTUS	stop_codon	5460172	5460174	.	+	0	transcript_id "Ledus.S2G071400.t1"; gene_id "Ledus.S2G071400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3593.t1 is derived from g1029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9914951	9917434	.	+	.	Ledus.S1G101400
Ledus.S1	AUGUSTUS	transcript	9914951	9917434	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	start_codon	9914951	9914953	.	+	0	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	CDS	9914951	9915046	0.49	+	0	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	exon	9914951	9915046	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	intron	9915047	9915119	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	CDS	9915120	9915279	1	+	0	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	exon	9915120	9915279	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	intron	9915280	9915491	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	CDS	9915492	9915692	1	+	2	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	exon	9915492	9915692	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	intron	9915693	9915775	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	CDS	9915776	9915840	1	+	2	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	exon	9915776	9915840	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	intron	9915841	9915924	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	CDS	9915925	9915967	1	+	0	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	exon	9915925	9915967	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	intron	9915968	9916104	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	CDS	9916105	9916163	1	+	2	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	exon	9916105	9916163	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	intron	9916164	9916263	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	CDS	9916264	9916350	1	+	0	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	exon	9916264	9916350	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	intron	9916351	9916469	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	CDS	9916470	9916520	1	+	0	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	exon	9916470	9916520	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	intron	9916521	9916626	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	CDS	9916627	9916869	1	+	0	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	exon	9916627	9916869	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	intron	9916870	9916957	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	CDS	9916958	9917051	1	+	0	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	exon	9916958	9917051	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	intron	9917052	9917120	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	CDS	9917121	9917261	1	+	2	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	exon	9917121	9917261	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	intron	9917262	9917357	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	CDS	9917358	9917434	1	+	2	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	exon	9917358	9917434	.	+	.	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
Ledus.S1	AUGUSTUS	stop_codon	9917435	9917437	.	+	0	transcript_id "Ledus.S1G101400.t1"; gene_id "Ledus.S1G101400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4244.t1 is derived from g1680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15737779	15738117	.	-	.	Ledus.S1G166500
Ledus.S1	AUGUSTUS	transcript	15737779	15738117	.	-	.	transcript_id "Ledus.S1G166500.t1"; gene_id "Ledus.S1G166500"
Ledus.S1	AUGUSTUS	stop_codon	15737776	15737778	.	-	0	transcript_id "Ledus.S1G166500.t1"; gene_id "Ledus.S1G166500"
Ledus.S1	AUGUSTUS	CDS	15737779	15738117	0.21	-	0	transcript_id "Ledus.S1G166500.t1"; gene_id "Ledus.S1G166500"
Ledus.S1	AUGUSTUS	exon	15737779	15738117	.	-	.	transcript_id "Ledus.S1G166500.t1"; gene_id "Ledus.S1G166500"
Ledus.S1	AUGUSTUS	start_codon	15738115	15738117	.	-	0	transcript_id "Ledus.S1G166500.t1"; gene_id "Ledus.S1G166500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4380.t1 is derived from g1816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16722078	16722518	.	-	.	Ledus.S1G180100
Ledus.S1	AUGUSTUS	transcript	16722078	16722518	.	-	.	transcript_id "Ledus.S1G180100.t1"; gene_id "Ledus.S1G180100"
Ledus.S1	AUGUSTUS	stop_codon	16722075	16722077	.	-	0	transcript_id "Ledus.S1G180100.t1"; gene_id "Ledus.S1G180100"
Ledus.S1	AUGUSTUS	CDS	16722078	16722518	0.57	-	0	transcript_id "Ledus.S1G180100.t1"; gene_id "Ledus.S1G180100"
Ledus.S1	AUGUSTUS	exon	16722078	16722518	.	-	.	transcript_id "Ledus.S1G180100.t1"; gene_id "Ledus.S1G180100"
Ledus.S1	AUGUSTUS	start_codon	16722516	16722518	.	-	0	transcript_id "Ledus.S1G180100.t1"; gene_id "Ledus.S1G180100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6800.t1 is derived from g4244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34262901	34266442	.	-	.	Ledus.S1G422100
Ledus.S1	AUGUSTUS	transcript	34262901	34266442	.	-	.	transcript_id "Ledus.S1G422100.t1"; gene_id "Ledus.S1G422100"
Ledus.S1	AUGUSTUS	stop_codon	34262898	34262900	.	-	0	transcript_id "Ledus.S1G422100.t1"; gene_id "Ledus.S1G422100"
Ledus.S1	AUGUSTUS	CDS	34262901	34264745	1	-	0	transcript_id "Ledus.S1G422100.t1"; gene_id "Ledus.S1G422100"
Ledus.S1	AUGUSTUS	exon	34262901	34264745	.	-	.	transcript_id "Ledus.S1G422100.t1"; gene_id "Ledus.S1G422100"
Ledus.S1	AUGUSTUS	intron	34264746	34264858	.	-	.	transcript_id "Ledus.S1G422100.t1"; gene_id "Ledus.S1G422100"
Ledus.S1	AUGUSTUS	CDS	34264859	34266442	1	-	0	transcript_id "Ledus.S1G422100.t1"; gene_id "Ledus.S1G422100"
Ledus.S1	AUGUSTUS	exon	34264859	34266442	.	-	.	transcript_id "Ledus.S1G422100.t1"; gene_id "Ledus.S1G422100"
Ledus.S1	AUGUSTUS	start_codon	34266440	34266442	.	-	0	transcript_id "Ledus.S1G422100.t1"; gene_id "Ledus.S1G422100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9366.t1 is derived from g10396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6395806	6396072	.	+	.	Ledus.S3G084300
Ledus.S3	AUGUSTUS	transcript	6395806	6396072	.	+	.	transcript_id "Ledus.S3G084300.t1"; gene_id "Ledus.S3G084300"
Ledus.S3	AUGUSTUS	start_codon	6395806	6395808	.	+	0	transcript_id "Ledus.S3G084300.t1"; gene_id "Ledus.S3G084300"
Ledus.S3	AUGUSTUS	CDS	6395806	6396072	0.59	+	0	transcript_id "Ledus.S3G084300.t1"; gene_id "Ledus.S3G084300"
Ledus.S3	AUGUSTUS	exon	6395806	6396072	.	+	.	transcript_id "Ledus.S3G084300.t1"; gene_id "Ledus.S3G084300"
Ledus.S3	AUGUSTUS	stop_codon	6396073	6396075	.	+	0	transcript_id "Ledus.S3G084300.t1"; gene_id "Ledus.S3G084300"
# This transcript jg8735.t2 is derived from g9765.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8736.t1 is derived from g9766.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1693589	1696754	.	+	.	Ledus.S3G021300
Ledus.S3	AUGUSTUS	transcript	1693589	1696754	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	start_codon	1693589	1693591	.	+	0	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1693589	1693782	0.84	+	0	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1693589	1693782	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1693783	1693940	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1693941	1694026	0.71	+	1	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1693941	1694026	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1694027	1694128	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1694129	1694233	1	+	2	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1694129	1694233	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1694234	1694466	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1694467	1694612	1	+	2	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1694467	1694612	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1694613	1694692	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1694693	1694794	1	+	0	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1694693	1694794	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1694795	1694874	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1694875	1694961	1	+	0	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1694875	1694961	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1694962	1695106	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1695107	1695274	1	+	0	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1695107	1695274	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1695275	1695367	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1695368	1695499	1	+	0	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1695368	1695499	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1695500	1695622	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1695623	1695753	1	+	0	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1695623	1695753	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1695754	1695880	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1695881	1696031	1	+	1	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1695881	1696031	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1696032	1696121	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1696122	1696253	1	+	0	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1696122	1696253	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1696254	1696388	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1696389	1696433	1	+	0	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1696389	1696433	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1696434	1696522	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1696523	1696600	1	+	0	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1696523	1696600	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1696601	1696694	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1696695	1696754	0.86	+	0	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1696695	1696754	.	+	.	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	stop_codon	1696755	1696757	.	+	0	transcript_id "Ledus.S3G021300.t1"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	transcript	1693589	1696754	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	start_codon	1693589	1693591	.	+	0	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1693589	1693782	0.78	+	0	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1693589	1693782	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1693783	1693940	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1693941	1694026	0.7	+	1	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1693941	1694026	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1694027	1694128	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1694129	1694233	1	+	2	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1694129	1694233	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1694234	1694466	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1694467	1694612	1	+	2	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1694467	1694612	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1694613	1694692	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1694693	1694794	1	+	0	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1694693	1694794	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1694795	1694874	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1694875	1694961	1	+	0	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1694875	1694961	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1694962	1695103	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1695104	1695274	1	+	0	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1695104	1695274	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1695275	1695367	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1695368	1695499	1	+	0	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1695368	1695499	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1695500	1695622	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1695623	1695753	1	+	0	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1695623	1695753	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1695754	1695880	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1695881	1696031	1	+	1	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1695881	1696031	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1696032	1696121	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1696122	1696253	1	+	0	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1696122	1696253	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1696254	1696388	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1696389	1696433	1	+	0	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1696389	1696433	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1696434	1696522	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1696523	1696600	1	+	0	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1696523	1696600	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	intron	1696601	1696694	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	CDS	1696695	1696754	0.75	+	0	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	exon	1696695	1696754	.	+	.	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
Ledus.S3	AUGUSTUS	stop_codon	1696755	1696757	.	+	0	transcript_id "Ledus.S3G021300.t2"; gene_id "Ledus.S3G021300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8518.t1 is derived from g13190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12412517	12418698	.	-	.	Ledus.S5G129600
Ledus.S5	AUGUSTUS	transcript	12412517	12418698	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	stop_codon	12412514	12412516	.	-	0	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12412517	12413124	0.98	-	2	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12412517	12413124	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12413125	12413202	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12413203	12413320	0.99	-	0	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12413203	12413320	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12413321	12413432	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12413433	12413606	0.85	-	0	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12413433	12413606	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12413607	12413709	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12413710	12413833	0.89	-	1	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12413710	12413833	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12413834	12413952	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12413953	12414019	0.78	-	2	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12413953	12414019	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12414020	12414147	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12414148	12414252	0.9	-	2	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12414148	12414252	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12414253	12414362	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12414363	12414474	0.97	-	0	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12414363	12414474	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12414475	12414559	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12414560	12414672	1	-	2	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12414560	12414672	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12414673	12414777	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12414778	12414901	1	-	0	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12414778	12414901	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12414902	12415000	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12415001	12415101	1	-	2	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12415001	12415101	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12415102	12415258	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12415259	12415378	1	-	2	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12415259	12415378	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12415379	12415509	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12415510	12415651	1	-	0	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12415510	12415651	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12415652	12415792	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12415793	12416732	1	-	1	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12415793	12416732	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12416733	12416835	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12416836	12416946	0.99	-	1	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12416836	12416946	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12416947	12417047	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12417048	12417139	1	-	0	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12417048	12417139	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12417140	12417239	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12417240	12417416	0.97	-	0	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12417240	12417416	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12417417	12417535	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12417536	12418321	1	-	0	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12417536	12418321	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	intron	12418322	12418407	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	CDS	12418408	12418698	0.65	-	0	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	exon	12418408	12418698	.	-	.	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
Ledus.S5	AUGUSTUS	start_codon	12418696	12418698	.	-	0	transcript_id "Ledus.S5G129600.t1"; gene_id "Ledus.S5G129600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5637.t1 is derived from g3076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25470127	25476666	.	-	.	Ledus.S1G305800
Ledus.S1	AUGUSTUS	transcript	25470127	25476666	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	stop_codon	25470124	25470126	.	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25470127	25470290	0.61	-	2	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25470127	25470290	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25470291	25470389	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25470390	25470514	0.51	-	1	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25470390	25470514	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25470515	25470657	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25470658	25471413	0.84	-	1	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25470658	25471413	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25471414	25471601	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25471602	25471648	1	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25471602	25471648	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25471649	25471768	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25471769	25471837	0.93	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25471769	25471837	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25471838	25471932	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25471933	25472040	1	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25471933	25472040	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25472041	25472221	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25472222	25472275	1	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25472222	25472275	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25472276	25472378	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25472379	25472558	1	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25472379	25472558	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25472559	25472658	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25472659	25472743	1	-	1	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25472659	25472743	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25472744	25472931	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25472932	25473383	0.72	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25472932	25473383	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25473384	25473491	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25473492	25473583	0.75	-	2	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25473492	25473583	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25473584	25473718	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25473719	25473777	1	-	1	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25473719	25473777	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25473778	25473934	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25473935	25474115	1	-	2	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25473935	25474115	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25474116	25474203	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25474204	25474303	1	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25474204	25474303	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25474304	25474408	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25474409	25474511	0.95	-	1	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25474409	25474511	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25474512	25474704	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25474705	25474817	1	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25474705	25474817	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25474818	25474918	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25474919	25475005	1	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25474919	25475005	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25475006	25475516	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25475517	25475601	1	-	1	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25475517	25475601	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25475602	25475926	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25475927	25476029	1	-	2	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25475927	25476029	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25476030	25476104	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25476105	25476189	1	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25476105	25476189	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25476190	25476429	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25476430	25476666	0.99	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25476430	25476666	.	-	.	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	start_codon	25476664	25476666	.	-	0	transcript_id "Ledus.S1G305800.t1"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	transcript	25470127	25476666	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	stop_codon	25470124	25470126	.	-	0	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25470127	25470290	0.51	-	2	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25470127	25470290	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25470291	25470389	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25470390	25470514	0.42	-	1	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25470390	25470514	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25470515	25470657	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25470658	25471413	0.93	-	1	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25470658	25471413	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25471414	25471601	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25471602	25471648	1	-	0	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25471602	25471648	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25471649	25471768	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25471769	25471837	0.97	-	0	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25471769	25471837	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25471838	25471932	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25471933	25472040	1	-	0	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25471933	25472040	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25472041	25472221	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25472222	25472275	1	-	0	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25472222	25472275	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25472276	25472378	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25472379	25472558	0.98	-	0	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25472379	25472558	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25472559	25472658	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25472659	25472743	1	-	1	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25472659	25472743	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25472744	25472931	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25472932	25473383	0.64	-	0	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25472932	25473383	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25473384	25473491	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25473492	25473583	0.69	-	2	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25473492	25473583	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25473584	25473718	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25473719	25473777	1	-	1	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25473719	25473777	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25473778	25473934	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25473935	25474115	1	-	2	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25473935	25474115	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25474116	25474203	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25474204	25474303	1	-	0	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25474204	25474303	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25474304	25474408	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25474409	25474527	0.91	-	2	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25474409	25474527	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25474528	25474704	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25474705	25474737	0.88	-	2	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25474705	25474737	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25474738	25474914	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25474915	25475005	0.93	-	0	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25474915	25475005	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25475006	25475516	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25475517	25475601	1	-	1	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25475517	25475601	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25475602	25475926	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25475927	25476029	1	-	2	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25475927	25476029	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25476030	25476104	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25476105	25476189	1	-	0	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25476105	25476189	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	intron	25476190	25476429	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	CDS	25476430	25476666	1	-	0	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	exon	25476430	25476666	.	-	.	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
Ledus.S1	AUGUSTUS	start_codon	25476664	25476666	.	-	0	transcript_id "Ledus.S1G305800.t2"; gene_id "Ledus.S1G305800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8231.t1 is derived from g12902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10064679	10066416	.	+	.	Ledus.S5G100900
Ledus.S5	AUGUSTUS	transcript	10065413	10066416	.	+	.	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	start_codon	10065413	10065415	.	+	0	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10065413	10065417	0.35	+	0	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10065413	10065417	.	+	.	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	intron	10065418	10065598	.	+	.	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10065599	10065642	0.94	+	1	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10065599	10065642	.	+	.	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	intron	10065643	10065903	.	+	.	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10065904	10066017	0.48	+	2	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10065904	10066017	.	+	.	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	intron	10066018	10066105	.	+	.	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10066106	10066224	1	+	2	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10066106	10066224	.	+	.	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	intron	10066225	10066308	.	+	.	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10066309	10066416	1	+	0	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10066309	10066416	.	+	.	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	stop_codon	10066417	10066419	.	+	0	transcript_id "Ledus.S5G100900.t1"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	transcript	10064679	10066416	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	start_codon	10064679	10064681	.	+	0	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10064679	10064850	0.41	+	0	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10064679	10064850	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	intron	10064851	10064927	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10064928	10064982	0.62	+	2	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10064928	10064982	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	intron	10064983	10065067	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10065068	10065103	0.41	+	1	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10065068	10065103	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	intron	10065104	10065295	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10065296	10065417	0.48	+	1	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10065296	10065417	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	intron	10065418	10065647	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10065648	10065755	0.97	+	2	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10065648	10065755	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	intron	10065756	10065885	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10065886	10066017	0.64	+	2	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10065886	10066017	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	intron	10066018	10066105	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10066106	10066224	1	+	2	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10066106	10066224	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	intron	10066225	10066308	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	CDS	10066309	10066416	1	+	0	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	exon	10066309	10066416	.	+	.	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
Ledus.S5	AUGUSTUS	stop_codon	10066417	10066419	.	+	0	transcript_id "Ledus.S5G100900.t2"; gene_id "Ledus.S5G100900"
# This transcript jg4324.t2 is derived from g1760.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4325.t1 is derived from g1761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16334176	16335157	.	-	.	Ledus.S1G174600
Ledus.S1	AUGUSTUS	transcript	16334176	16335157	.	-	.	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	stop_codon	16334173	16334175	.	-	0	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	CDS	16334176	16334304	0.98	-	0	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	exon	16334176	16334304	.	-	.	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	intron	16334305	16334387	.	-	.	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	CDS	16334388	16334523	1	-	1	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	exon	16334388	16334523	.	-	.	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	intron	16334524	16334614	.	-	.	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	CDS	16334615	16334742	1	-	0	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	exon	16334615	16334742	.	-	.	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	intron	16334743	16334836	.	-	.	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	CDS	16334837	16335157	0.42	-	0	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	exon	16334837	16335157	.	-	.	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
Ledus.S1	AUGUSTUS	start_codon	16335155	16335157	.	-	0	transcript_id "Ledus.S1G174600.t1"; gene_id "Ledus.S1G174600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg659.t1 is derived from g7520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3936350	3939022	.	+	.	Ledus.S2G054100
Ledus.S2	AUGUSTUS	transcript	3936350	3939022	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	start_codon	3936350	3936352	.	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3936350	3936538	0.54	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3936350	3936538	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	intron	3936539	3936623	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3936624	3936735	0.98	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3936624	3936735	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	intron	3936736	3936814	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3936815	3936927	0.78	+	2	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3936815	3936927	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	intron	3936928	3937025	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3937026	3937202	0.41	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3937026	3937202	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	intron	3937203	3937293	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3937294	3937488	0.62	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3937294	3937488	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	intron	3937489	3937606	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3937607	3937666	0.59	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3937607	3937666	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	intron	3937667	3937752	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3937753	3937839	0.97	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3937753	3937839	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	intron	3937840	3937933	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3937934	3938014	0.81	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3937934	3938014	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	intron	3938015	3938137	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3938138	3938170	0.54	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3938138	3938170	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	intron	3938171	3938439	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3938440	3938481	0.55	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3938440	3938481	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	intron	3938482	3938568	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3938569	3938647	0.57	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3938569	3938647	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	intron	3938648	3938743	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3938744	3938814	0.9	+	2	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3938744	3938814	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	intron	3938815	3938893	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	CDS	3938894	3939022	1	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	exon	3938894	3939022	.	+	.	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
Ledus.S2	AUGUSTUS	stop_codon	3939023	3939025	.	+	0	transcript_id "Ledus.S2G054100.t1"; gene_id "Ledus.S2G054100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4044.t1 is derived from g1480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14302026	14304777	.	-	.	Ledus.S1G146500
Ledus.S1	AUGUSTUS	transcript	14302026	14304777	.	-	.	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	stop_codon	14302023	14302025	.	-	0	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	CDS	14302026	14302113	0.95	-	1	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	exon	14302026	14302113	.	-	.	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	intron	14302114	14302345	.	-	.	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	CDS	14302346	14302375	0.95	-	1	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	exon	14302346	14302375	.	-	.	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	intron	14302376	14302558	.	-	.	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	CDS	14302559	14302614	0.9	-	0	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	exon	14302559	14302614	.	-	.	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	intron	14302615	14302851	.	-	.	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	CDS	14302852	14304777	0.57	-	0	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	exon	14302852	14304777	.	-	.	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
Ledus.S1	AUGUSTUS	start_codon	14304775	14304777	.	-	0	transcript_id "Ledus.S1G146500.t1"; gene_id "Ledus.S1G146500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8631.t1 is derived from g9661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	920873	922092	.	+	.	Ledus.S3G010800
Ledus.S3	AUGUSTUS	transcript	920873	922092	.	+	.	transcript_id "Ledus.S3G010800.t1"; gene_id "Ledus.S3G010800"
Ledus.S3	AUGUSTUS	start_codon	920873	920875	.	+	0	transcript_id "Ledus.S3G010800.t1"; gene_id "Ledus.S3G010800"
Ledus.S3	AUGUSTUS	CDS	920873	921677	0.64	+	0	transcript_id "Ledus.S3G010800.t1"; gene_id "Ledus.S3G010800"
Ledus.S3	AUGUSTUS	exon	920873	921677	.	+	.	transcript_id "Ledus.S3G010800.t1"; gene_id "Ledus.S3G010800"
Ledus.S3	AUGUSTUS	intron	921678	921754	.	+	.	transcript_id "Ledus.S3G010800.t1"; gene_id "Ledus.S3G010800"
Ledus.S3	AUGUSTUS	CDS	921755	922092	1	+	2	transcript_id "Ledus.S3G010800.t1"; gene_id "Ledus.S3G010800"
Ledus.S3	AUGUSTUS	exon	921755	922092	.	+	.	transcript_id "Ledus.S3G010800.t1"; gene_id "Ledus.S3G010800"
Ledus.S3	AUGUSTUS	stop_codon	922093	922095	.	+	0	transcript_id "Ledus.S3G010800.t1"; gene_id "Ledus.S3G010800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8167.t1 is derived from g12838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9586909	9589075	.	+	.	Ledus.S5G094500
Ledus.S5	AUGUSTUS	transcript	9586909	9589075	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	start_codon	9586909	9586911	.	+	0	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	CDS	9586909	9587162	0.65	+	0	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	exon	9586909	9587162	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	intron	9587163	9587252	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	CDS	9587253	9587577	1	+	1	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	exon	9587253	9587577	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	intron	9587578	9587664	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	CDS	9587665	9587814	1	+	0	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	exon	9587665	9587814	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	intron	9587815	9587885	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	CDS	9587886	9588140	1	+	0	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	exon	9587886	9588140	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	intron	9588141	9588232	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	CDS	9588233	9588325	1	+	0	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	exon	9588233	9588325	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	intron	9588326	9588417	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	CDS	9588418	9588496	1	+	0	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	exon	9588418	9588496	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	intron	9588497	9588585	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	CDS	9588586	9588692	1	+	2	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	exon	9588586	9588692	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	intron	9588693	9588773	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	CDS	9588774	9588892	1	+	0	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	exon	9588774	9588892	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	intron	9588893	9588981	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	CDS	9588982	9589075	0.27	+	1	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	exon	9588982	9589075	.	+	.	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
Ledus.S5	AUGUSTUS	stop_codon	9589076	9589078	.	+	0	transcript_id "Ledus.S5G094500.t1"; gene_id "Ledus.S5G094500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13048.t1 is derived from g6858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4153351	4153840	.	-	.	Ledus.S6G011000
Ledus.S6	AUGUSTUS	transcript	4153351	4153840	.	-	.	transcript_id "Ledus.S6G011000.t1"; gene_id "Ledus.S6G011000"
Ledus.S6	AUGUSTUS	stop_codon	4153348	4153350	.	-	0	transcript_id "Ledus.S6G011000.t1"; gene_id "Ledus.S6G011000"
Ledus.S6	AUGUSTUS	CDS	4153351	4153531	0.46	-	1	transcript_id "Ledus.S6G011000.t1"; gene_id "Ledus.S6G011000"
Ledus.S6	AUGUSTUS	exon	4153351	4153531	.	-	.	transcript_id "Ledus.S6G011000.t1"; gene_id "Ledus.S6G011000"
Ledus.S6	AUGUSTUS	intron	4153532	4153643	.	-	.	transcript_id "Ledus.S6G011000.t1"; gene_id "Ledus.S6G011000"
Ledus.S6	AUGUSTUS	CDS	4153644	4153840	0.48	-	0	transcript_id "Ledus.S6G011000.t1"; gene_id "Ledus.S6G011000"
Ledus.S6	AUGUSTUS	exon	4153644	4153840	.	-	.	transcript_id "Ledus.S6G011000.t1"; gene_id "Ledus.S6G011000"
Ledus.S6	AUGUSTUS	start_codon	4153838	4153840	.	-	0	transcript_id "Ledus.S6G011000.t1"; gene_id "Ledus.S6G011000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10157.t1 is derived from g11187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13384347	13385423	.	+	.	Ledus.S3G163400
Ledus.S3	AUGUSTUS	transcript	13384347	13385423	.	+	.	transcript_id "Ledus.S3G163400.t1"; gene_id "Ledus.S3G163400"
Ledus.S3	AUGUSTUS	start_codon	13384347	13384349	.	+	0	transcript_id "Ledus.S3G163400.t1"; gene_id "Ledus.S3G163400"
Ledus.S3	AUGUSTUS	CDS	13384347	13385423	0.41	+	0	transcript_id "Ledus.S3G163400.t1"; gene_id "Ledus.S3G163400"
Ledus.S3	AUGUSTUS	exon	13384347	13385423	.	+	.	transcript_id "Ledus.S3G163400.t1"; gene_id "Ledus.S3G163400"
Ledus.S3	AUGUSTUS	stop_codon	13385424	13385426	.	+	0	transcript_id "Ledus.S3G163400.t1"; gene_id "Ledus.S3G163400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11931.t1 is derived from g5550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7851201	7860003	.	-	.	Ledus.S4G108700
Ledus.S4	AUGUSTUS	transcript	7851201	7860003	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	stop_codon	7851198	7851200	.	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7851201	7851341	1	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7851201	7851341	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7851342	7851438	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7851439	7851660	1	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7851439	7851660	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7851661	7851752	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7851753	7851860	1	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7851753	7851860	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7851861	7851936	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7851937	7852037	1	-	2	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7851937	7852037	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7852038	7852113	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7852114	7852234	1	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7852114	7852234	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7852235	7852333	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7852334	7852490	1	-	1	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7852334	7852490	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7852491	7852580	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7852581	7852703	1	-	1	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7852581	7852703	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7852704	7852869	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7852870	7852958	1	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7852870	7852958	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7852959	7853062	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7853063	7853392	0.88	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7853063	7853392	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7853393	7853461	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7853462	7853528	0.37	-	1	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7853462	7853528	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7853529	7853829	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7853830	7853884	0.52	-	2	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7853830	7853884	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7853885	7854044	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7854045	7854057	0.85	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7854045	7854057	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7854058	7854141	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7854142	7854669	0.75	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7854142	7854669	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7854670	7854766	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7854767	7854918	1	-	2	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7854767	7854918	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7854919	7855008	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7855009	7855117	1	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7855009	7855117	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7855118	7855332	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7855333	7855437	1	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7855333	7855437	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7855438	7855567	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7855568	7855651	1	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7855568	7855651	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	intron	7855652	7855776	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	CDS	7855777	7860003	0.63	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	exon	7855777	7860003	.	-	.	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
Ledus.S4	AUGUSTUS	start_codon	7860001	7860003	.	-	0	transcript_id "Ledus.S4G108700.t1"; gene_id "Ledus.S4G108700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8616.t1 is derived from g9646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	674614	678285	.	+	.	Ledus.S3G009300
Ledus.S3	AUGUSTUS	transcript	674614	678285	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	start_codon	674614	674616	.	+	0	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	674614	674686	0.59	+	0	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	674614	674686	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	674687	674818	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	674819	674988	0.99	+	2	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	674819	674988	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	674989	675082	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	675083	675094	0.95	+	0	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	675083	675094	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	675095	675222	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	675223	675503	1	+	0	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	675223	675503	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	675504	675592	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	675593	675753	1	+	1	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	675593	675753	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	675754	675849	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	675850	676003	0.97	+	2	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	675850	676003	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	676004	676111	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	676112	676196	1	+	1	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	676112	676196	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	676197	676304	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	676305	676405	0.99	+	0	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	676305	676405	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	676406	676523	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	676524	676822	1	+	1	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	676524	676822	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	676823	676917	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	676918	677091	1	+	2	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	676918	677091	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	677092	677188	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	677189	677254	1	+	2	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	677189	677254	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	677255	677362	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	677363	677541	1	+	2	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	677363	677541	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	677542	677627	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	677628	677797	1	+	0	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	677628	677797	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	677798	677889	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	677890	678058	1	+	1	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	677890	678058	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	intron	678059	678147	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	CDS	678148	678285	1	+	0	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	exon	678148	678285	.	+	.	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
Ledus.S3	AUGUSTUS	stop_codon	678286	678288	.	+	0	transcript_id "Ledus.S3G009300.t1"; gene_id "Ledus.S3G009300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12140.t1 is derived from g5759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9779867	9782826	.	+	.	Ledus.S4G129600
Ledus.S4	AUGUSTUS	transcript	9779867	9782826	.	+	.	transcript_id "Ledus.S4G129600.t1"; gene_id "Ledus.S4G129600"
Ledus.S4	AUGUSTUS	start_codon	9779867	9779869	.	+	0	transcript_id "Ledus.S4G129600.t1"; gene_id "Ledus.S4G129600"
Ledus.S4	AUGUSTUS	CDS	9779867	9779950	0.64	+	0	transcript_id "Ledus.S4G129600.t1"; gene_id "Ledus.S4G129600"
Ledus.S4	AUGUSTUS	exon	9779867	9779950	.	+	.	transcript_id "Ledus.S4G129600.t1"; gene_id "Ledus.S4G129600"
Ledus.S4	AUGUSTUS	intron	9779951	9780036	.	+	.	transcript_id "Ledus.S4G129600.t1"; gene_id "Ledus.S4G129600"
Ledus.S4	AUGUSTUS	CDS	9780037	9782826	0.98	+	0	transcript_id "Ledus.S4G129600.t1"; gene_id "Ledus.S4G129600"
Ledus.S4	AUGUSTUS	exon	9780037	9782826	.	+	.	transcript_id "Ledus.S4G129600.t1"; gene_id "Ledus.S4G129600"
Ledus.S4	AUGUSTUS	stop_codon	9782827	9782829	.	+	0	transcript_id "Ledus.S4G129600.t1"; gene_id "Ledus.S4G129600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3451.t1 is derived from g886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8423934	8426092	.	+	.	Ledus.S1G087200
Ledus.S1	AUGUSTUS	transcript	8423934	8426092	.	+	.	transcript_id "Ledus.S1G087200.t1"; gene_id "Ledus.S1G087200"
Ledus.S1	AUGUSTUS	start_codon	8423934	8423936	.	+	0	transcript_id "Ledus.S1G087200.t1"; gene_id "Ledus.S1G087200"
Ledus.S1	AUGUSTUS	CDS	8423934	8424014	0.99	+	0	transcript_id "Ledus.S1G087200.t1"; gene_id "Ledus.S1G087200"
Ledus.S1	AUGUSTUS	exon	8423934	8424014	.	+	.	transcript_id "Ledus.S1G087200.t1"; gene_id "Ledus.S1G087200"
Ledus.S1	AUGUSTUS	intron	8424015	8424175	.	+	.	transcript_id "Ledus.S1G087200.t1"; gene_id "Ledus.S1G087200"
Ledus.S1	AUGUSTUS	CDS	8424176	8426092	0.98	+	0	transcript_id "Ledus.S1G087200.t1"; gene_id "Ledus.S1G087200"
Ledus.S1	AUGUSTUS	exon	8424176	8426092	.	+	.	transcript_id "Ledus.S1G087200.t1"; gene_id "Ledus.S1G087200"
Ledus.S1	AUGUSTUS	stop_codon	8426093	8426095	.	+	0	transcript_id "Ledus.S1G087200.t1"; gene_id "Ledus.S1G087200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5338.t1 is derived from g2777.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23432635	23433345	.	+	.	Ledus.S1G275900
Ledus.S1	AUGUSTUS	transcript	23432635	23433345	.	+	.	transcript_id "Ledus.S1G275900.t1"; gene_id "Ledus.S1G275900"
Ledus.S1	AUGUSTUS	start_codon	23432635	23432637	.	+	0	transcript_id "Ledus.S1G275900.t1"; gene_id "Ledus.S1G275900"
Ledus.S1	AUGUSTUS	CDS	23432635	23433345	0.25	+	0	transcript_id "Ledus.S1G275900.t1"; gene_id "Ledus.S1G275900"
Ledus.S1	AUGUSTUS	exon	23432635	23433345	.	+	.	transcript_id "Ledus.S1G275900.t1"; gene_id "Ledus.S1G275900"
Ledus.S1	AUGUSTUS	stop_codon	23433346	23433348	.	+	0	transcript_id "Ledus.S1G275900.t1"; gene_id "Ledus.S1G275900"
# This transcript jg10874.t2 is derived from g4492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10875.t1 is derived from g4493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	228805	230166	.	-	.	Ledus.S4G003100
Ledus.S4	AUGUSTUS	transcript	228805	230166	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	stop_codon	228802	228804	.	-	0	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	CDS	228805	228906	1	-	0	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	exon	228805	228906	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	intron	228907	228992	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	CDS	228993	229067	1	-	0	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	exon	228993	229067	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	intron	229068	229144	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	CDS	229145	229270	1	-	0	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	exon	229145	229270	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	intron	229271	229359	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	CDS	229360	229542	0.97	-	0	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	exon	229360	229542	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	intron	229543	229653	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	CDS	229654	229741	0.98	-	1	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	exon	229654	229741	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	intron	229742	229874	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	CDS	229875	229910	1	-	1	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	exon	229875	229910	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	intron	229911	229996	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	CDS	229997	230166	0.89	-	0	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	exon	229997	230166	.	-	.	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
Ledus.S4	AUGUSTUS	start_codon	230164	230166	.	-	0	transcript_id "Ledus.S4G003100.t1"; gene_id "Ledus.S4G003100"
# This transcript jg9123.t2 is derived from g10153.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9124.t1 is derived from g10154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4699864	4701711	.	-	.	Ledus.S3G060100
Ledus.S3	AUGUSTUS	transcript	4699864	4701711	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	stop_codon	4699861	4699863	.	-	0	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	CDS	4699864	4699886	1	-	2	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	exon	4699864	4699886	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	intron	4699887	4700121	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	CDS	4700122	4700185	1	-	0	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	exon	4700122	4700185	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	intron	4700186	4700325	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	CDS	4700326	4700577	1	-	0	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	exon	4700326	4700577	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	intron	4700578	4701113	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	CDS	4701114	4701220	1	-	2	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	exon	4701114	4701220	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	intron	4701221	4701306	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	CDS	4701307	4701398	1	-	1	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	exon	4701307	4701398	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	intron	4701399	4701537	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	CDS	4701538	4701584	0.72	-	0	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	exon	4701538	4701584	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	intron	4701585	4701705	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	CDS	4701706	4701711	0.64	-	0	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	exon	4701706	4701711	.	-	.	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
Ledus.S3	AUGUSTUS	start_codon	4701709	4701711	.	-	0	transcript_id "Ledus.S3G060100.t1"; gene_id "Ledus.S3G060100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10843.t1 is derived from g6463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C32	AUGUSTUS	gene	22139	22519	.	-	.	Ledus.C32G000300
Ledus.C32	AUGUSTUS	transcript	22139	22519	.	-	.	transcript_id "Ledus.C32G000300.t1"; gene_id "Ledus.C32G000300"
Ledus.C32	AUGUSTUS	stop_codon	22136	22138	.	-	0	transcript_id "Ledus.C32G000300.t1"; gene_id "Ledus.C32G000300"
Ledus.C32	AUGUSTUS	CDS	22139	22519	0.58	-	0	transcript_id "Ledus.C32G000300.t1"; gene_id "Ledus.C32G000300"
Ledus.C32	AUGUSTUS	exon	22139	22519	.	-	.	transcript_id "Ledus.C32G000300.t1"; gene_id "Ledus.C32G000300"
Ledus.C32	AUGUSTUS	start_codon	22517	22519	.	-	0	transcript_id "Ledus.C32G000300.t1"; gene_id "Ledus.C32G000300"
# This transcript jg455.t2 is derived from g7316.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg455.t3 is derived from g7316.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg456.t1 is derived from g7317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2675711	2676523	.	-	.	Ledus.S2G033800
Ledus.S2	AUGUSTUS	transcript	2675711	2676523	.	-	.	transcript_id "Ledus.S2G033800.t1"; gene_id "Ledus.S2G033800"
Ledus.S2	AUGUSTUS	stop_codon	2675708	2675710	.	-	0	transcript_id "Ledus.S2G033800.t1"; gene_id "Ledus.S2G033800"
Ledus.S2	AUGUSTUS	CDS	2675711	2676523	0.61	-	0	transcript_id "Ledus.S2G033800.t1"; gene_id "Ledus.S2G033800"
Ledus.S2	AUGUSTUS	exon	2675711	2676523	.	-	.	transcript_id "Ledus.S2G033800.t1"; gene_id "Ledus.S2G033800"
Ledus.S2	AUGUSTUS	start_codon	2676521	2676523	.	-	0	transcript_id "Ledus.S2G033800.t1"; gene_id "Ledus.S2G033800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10844.t1 is derived from g6464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C32	AUGUSTUS	gene	22634	23815	.	+	.	Ledus.C32G000400
Ledus.C32	AUGUSTUS	transcript	22634	23815	.	+	.	transcript_id "Ledus.C32G000400.t1"; gene_id "Ledus.C32G000400"
Ledus.C32	AUGUSTUS	start_codon	22634	22636	.	+	0	transcript_id "Ledus.C32G000400.t1"; gene_id "Ledus.C32G000400"
Ledus.C32	AUGUSTUS	CDS	22634	23815	0.63	+	0	transcript_id "Ledus.C32G000400.t1"; gene_id "Ledus.C32G000400"
Ledus.C32	AUGUSTUS	exon	22634	23815	.	+	.	transcript_id "Ledus.C32G000400.t1"; gene_id "Ledus.C32G000400"
Ledus.C32	AUGUSTUS	stop_codon	23816	23818	.	+	0	transcript_id "Ledus.C32G000400.t1"; gene_id "Ledus.C32G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6624.t1 is derived from g4067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32764511	32765815	.	-	.	Ledus.S1G404500
Ledus.S1	AUGUSTUS	transcript	32764511	32765815	.	-	.	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	stop_codon	32764508	32764510	.	-	0	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	CDS	32764511	32764890	0.78	-	2	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	exon	32764511	32764890	.	-	.	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	intron	32764891	32764973	.	-	.	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	CDS	32764974	32765364	0.37	-	0	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	exon	32764974	32765364	.	-	.	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	intron	32765365	32765452	.	-	.	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	CDS	32765453	32765477	0.39	-	1	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	exon	32765453	32765477	.	-	.	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	intron	32765478	32765566	.	-	.	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	CDS	32765567	32765633	0.42	-	2	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	exon	32765567	32765633	.	-	.	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	intron	32765634	32765724	.	-	.	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	CDS	32765725	32765815	0.42	-	0	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	exon	32765725	32765815	.	-	.	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
Ledus.S1	AUGUSTUS	start_codon	32765813	32765815	.	-	0	transcript_id "Ledus.S1G404500.t1"; gene_id "Ledus.S1G404500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5903.t1 is derived from g3346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27694627	27697051	.	+	.	Ledus.S1G332400
Ledus.S1	AUGUSTUS	transcript	27694627	27697051	.	+	.	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	start_codon	27694627	27694629	.	+	0	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	CDS	27694627	27694711	0.86	+	0	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	exon	27694627	27694711	.	+	.	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	intron	27694712	27694832	.	+	.	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	CDS	27694833	27695399	0.85	+	2	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	exon	27694833	27695399	.	+	.	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	intron	27695400	27695484	.	+	.	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	CDS	27695485	27695530	0.39	+	2	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	exon	27695485	27695530	.	+	.	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	intron	27695531	27695625	.	+	.	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	CDS	27695626	27696256	0.27	+	1	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	exon	27695626	27696256	.	+	.	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	intron	27696257	27696337	.	+	.	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	CDS	27696338	27696525	0.98	+	0	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	exon	27696338	27696525	.	+	.	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	intron	27696526	27696612	.	+	.	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	CDS	27696613	27697051	1	+	1	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	exon	27696613	27697051	.	+	.	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
Ledus.S1	AUGUSTUS	stop_codon	27697052	27697054	.	+	0	transcript_id "Ledus.S1G332400.t1"; gene_id "Ledus.S1G332400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11736.t1 is derived from g5355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6477673	6478391	.	-	.	Ledus.S4G089200
Ledus.S4	AUGUSTUS	transcript	6477673	6478391	.	-	.	transcript_id "Ledus.S4G089200.t1"; gene_id "Ledus.S4G089200"
Ledus.S4	AUGUSTUS	stop_codon	6477670	6477672	.	-	0	transcript_id "Ledus.S4G089200.t1"; gene_id "Ledus.S4G089200"
Ledus.S4	AUGUSTUS	CDS	6477673	6477945	0.55	-	0	transcript_id "Ledus.S4G089200.t1"; gene_id "Ledus.S4G089200"
Ledus.S4	AUGUSTUS	exon	6477673	6477945	.	-	.	transcript_id "Ledus.S4G089200.t1"; gene_id "Ledus.S4G089200"
Ledus.S4	AUGUSTUS	intron	6477946	6478283	.	-	.	transcript_id "Ledus.S4G089200.t1"; gene_id "Ledus.S4G089200"
Ledus.S4	AUGUSTUS	CDS	6478284	6478391	0.55	-	0	transcript_id "Ledus.S4G089200.t1"; gene_id "Ledus.S4G089200"
Ledus.S4	AUGUSTUS	exon	6478284	6478391	.	-	.	transcript_id "Ledus.S4G089200.t1"; gene_id "Ledus.S4G089200"
Ledus.S4	AUGUSTUS	start_codon	6478389	6478391	.	-	0	transcript_id "Ledus.S4G089200.t1"; gene_id "Ledus.S4G089200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10774.t1 is derived from g11806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17582948	17583973	.	+	.	Ledus.S3G225100
Ledus.S3	AUGUSTUS	transcript	17582948	17583973	.	+	.	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	start_codon	17582948	17582950	.	+	0	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	CDS	17582948	17583232	0.76	+	0	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	exon	17582948	17583232	.	+	.	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	intron	17583233	17583320	.	+	.	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	CDS	17583321	17583506	1	+	0	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	exon	17583321	17583506	.	+	.	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	intron	17583507	17583581	.	+	.	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	CDS	17583582	17583752	0.99	+	0	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	exon	17583582	17583752	.	+	.	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	intron	17583753	17583853	.	+	.	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	CDS	17583854	17583973	0.98	+	0	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	exon	17583854	17583973	.	+	.	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
Ledus.S3	AUGUSTUS	stop_codon	17583974	17583976	.	+	0	transcript_id "Ledus.S3G225100.t1"; gene_id "Ledus.S3G225100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6237.t1 is derived from g3680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29796518	29801288	.	-	.	Ledus.S1G365800
Ledus.S1	AUGUSTUS	transcript	29796518	29801288	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	stop_codon	29796515	29796517	.	-	0	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29796518	29796688	0.99	-	0	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29796518	29796688	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	intron	29796689	29796798	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29796799	29796883	1	-	1	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29796799	29796883	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	intron	29796884	29796963	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29796964	29797185	1	-	1	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29796964	29797185	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	intron	29797186	29797295	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29797296	29797471	1	-	0	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29797296	29797471	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	intron	29797472	29797601	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29797602	29797665	1	-	1	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29797602	29797665	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	intron	29797666	29797858	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29797859	29797953	1	-	0	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29797859	29797953	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	intron	29797954	29798076	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29798077	29798164	1	-	1	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29798077	29798164	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	intron	29798165	29798258	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29798259	29798386	1	-	0	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29798259	29798386	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	intron	29798387	29798549	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29798550	29798681	1	-	0	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29798550	29798681	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	intron	29798682	29798807	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29798808	29798888	1	-	0	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29798808	29798888	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	intron	29798889	29798974	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29798975	29799133	1	-	0	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29798975	29799133	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	intron	29799134	29799271	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29799272	29800705	1	-	0	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29799272	29800705	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	intron	29800706	29801270	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	CDS	29801271	29801288	0.99	-	0	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	exon	29801271	29801288	.	-	.	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
Ledus.S1	AUGUSTUS	start_codon	29801286	29801288	.	-	0	transcript_id "Ledus.S1G365800.t1"; gene_id "Ledus.S1G365800"
# This transcript jg9869.t2 is derived from g10899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9869.t3 is derived from g10899.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9870.t1 is derived from g10900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10780175	10780995	.	-	.	Ledus.S3G134700
Ledus.S3	AUGUSTUS	transcript	10780175	10780995	.	-	.	transcript_id "Ledus.S3G134700.t1"; gene_id "Ledus.S3G134700"
Ledus.S3	AUGUSTUS	stop_codon	10780172	10780174	.	-	0	transcript_id "Ledus.S3G134700.t1"; gene_id "Ledus.S3G134700"
Ledus.S3	AUGUSTUS	CDS	10780175	10780304	1	-	1	transcript_id "Ledus.S3G134700.t1"; gene_id "Ledus.S3G134700"
Ledus.S3	AUGUSTUS	exon	10780175	10780304	.	-	.	transcript_id "Ledus.S3G134700.t1"; gene_id "Ledus.S3G134700"
Ledus.S3	AUGUSTUS	intron	10780305	10780391	.	-	.	transcript_id "Ledus.S3G134700.t1"; gene_id "Ledus.S3G134700"
Ledus.S3	AUGUSTUS	CDS	10780392	10780605	0.85	-	2	transcript_id "Ledus.S3G134700.t1"; gene_id "Ledus.S3G134700"
Ledus.S3	AUGUSTUS	exon	10780392	10780605	.	-	.	transcript_id "Ledus.S3G134700.t1"; gene_id "Ledus.S3G134700"
Ledus.S3	AUGUSTUS	intron	10780606	10780691	.	-	.	transcript_id "Ledus.S3G134700.t1"; gene_id "Ledus.S3G134700"
Ledus.S3	AUGUSTUS	CDS	10780692	10780995	0.4	-	0	transcript_id "Ledus.S3G134700.t1"; gene_id "Ledus.S3G134700"
Ledus.S3	AUGUSTUS	exon	10780692	10780995	.	-	.	transcript_id "Ledus.S3G134700.t1"; gene_id "Ledus.S3G134700"
Ledus.S3	AUGUSTUS	start_codon	10780993	10780995	.	-	0	transcript_id "Ledus.S3G134700.t1"; gene_id "Ledus.S3G134700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3505.t1 is derived from g940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8904341	8905603	.	-	.	Ledus.S1G092600
Ledus.S1	AUGUSTUS	transcript	8904341	8905603	.	-	.	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	stop_codon	8904338	8904340	.	-	0	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	CDS	8904341	8904371	0.86	-	1	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	exon	8904341	8904371	.	-	.	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	intron	8904372	8904562	.	-	.	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	CDS	8904563	8904652	0.56	-	1	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	exon	8904563	8904652	.	-	.	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	intron	8904653	8904760	.	-	.	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	CDS	8904761	8904991	0.52	-	1	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	exon	8904761	8904991	.	-	.	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	intron	8904992	8905094	.	-	.	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	CDS	8905095	8905603	0.8	-	0	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	exon	8905095	8905603	.	-	.	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
Ledus.S1	AUGUSTUS	start_codon	8905601	8905603	.	-	0	transcript_id "Ledus.S1G092600.t1"; gene_id "Ledus.S1G092600"
# This transcript jg11275.t2 is derived from g4893.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11275.t3 is derived from g4893.t5 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11275.t4 is derived from g4893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11276.t1 is derived from g4894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3182823	3184640	.	+	.	Ledus.S4G043200
Ledus.S4	AUGUSTUS	transcript	3182823	3184640	.	+	.	transcript_id "Ledus.S4G043200.t1"; gene_id "Ledus.S4G043200"
Ledus.S4	AUGUSTUS	start_codon	3182823	3182825	.	+	0	transcript_id "Ledus.S4G043200.t1"; gene_id "Ledus.S4G043200"
Ledus.S4	AUGUSTUS	CDS	3182823	3183616	0.57	+	0	transcript_id "Ledus.S4G043200.t1"; gene_id "Ledus.S4G043200"
Ledus.S4	AUGUSTUS	exon	3182823	3183616	.	+	.	transcript_id "Ledus.S4G043200.t1"; gene_id "Ledus.S4G043200"
Ledus.S4	AUGUSTUS	intron	3183617	3183706	.	+	.	transcript_id "Ledus.S4G043200.t1"; gene_id "Ledus.S4G043200"
Ledus.S4	AUGUSTUS	CDS	3183707	3184640	0.56	+	1	transcript_id "Ledus.S4G043200.t1"; gene_id "Ledus.S4G043200"
Ledus.S4	AUGUSTUS	exon	3183707	3184640	.	+	.	transcript_id "Ledus.S4G043200.t1"; gene_id "Ledus.S4G043200"
Ledus.S4	AUGUSTUS	stop_codon	3184641	3184643	.	+	0	transcript_id "Ledus.S4G043200.t1"; gene_id "Ledus.S4G043200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5419.t1 is derived from g2858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24053114	24053639	.	+	.	Ledus.S1G284000
Ledus.S1	AUGUSTUS	transcript	24053114	24053639	.	+	.	transcript_id "Ledus.S1G284000.t1"; gene_id "Ledus.S1G284000"
Ledus.S1	AUGUSTUS	start_codon	24053114	24053116	.	+	0	transcript_id "Ledus.S1G284000.t1"; gene_id "Ledus.S1G284000"
Ledus.S1	AUGUSTUS	CDS	24053114	24053382	0.66	+	0	transcript_id "Ledus.S1G284000.t1"; gene_id "Ledus.S1G284000"
Ledus.S1	AUGUSTUS	exon	24053114	24053382	.	+	.	transcript_id "Ledus.S1G284000.t1"; gene_id "Ledus.S1G284000"
Ledus.S1	AUGUSTUS	intron	24053383	24053638	.	+	.	transcript_id "Ledus.S1G284000.t1"; gene_id "Ledus.S1G284000"
Ledus.S1	AUGUSTUS	CDS	24053639	24053639	0.48	+	1	transcript_id "Ledus.S1G284000.t1"; gene_id "Ledus.S1G284000"
Ledus.S1	AUGUSTUS	exon	24053639	24053639	.	+	.	transcript_id "Ledus.S1G284000.t1"; gene_id "Ledus.S1G284000"
Ledus.S1	AUGUSTUS	stop_codon	24053640	24053642	.	+	0	transcript_id "Ledus.S1G284000.t1"; gene_id "Ledus.S1G284000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5848.t1 is derived from g3290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27276198	27277811	.	+	.	Ledus.S1G326900
Ledus.S1	AUGUSTUS	transcript	27276198	27277811	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	start_codon	27276198	27276200	.	+	0	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	CDS	27276198	27276341	0.49	+	0	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	exon	27276198	27276341	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	intron	27276342	27276426	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	CDS	27276427	27276554	1	+	0	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	exon	27276427	27276554	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	intron	27276555	27276643	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	CDS	27276644	27276846	1	+	1	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	exon	27276644	27276846	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	intron	27276847	27276925	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	CDS	27276926	27277051	1	+	2	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	exon	27276926	27277051	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	intron	27277052	27277128	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	CDS	27277129	27277287	1	+	2	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	exon	27277129	27277287	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	intron	27277288	27277383	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	CDS	27277384	27277577	0.97	+	2	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	exon	27277384	27277577	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	intron	27277578	27277682	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	CDS	27277683	27277811	1	+	0	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	exon	27277683	27277811	.	+	.	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
Ledus.S1	AUGUSTUS	stop_codon	27277812	27277814	.	+	0	transcript_id "Ledus.S1G326900.t1"; gene_id "Ledus.S1G326900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6395.t1 is derived from g3838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30993633	30998590	.	+	.	Ledus.S1G381600
Ledus.S1	AUGUSTUS	transcript	30993633	30998590	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	start_codon	30993633	30993635	.	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	CDS	30993633	30993900	1	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	exon	30993633	30993900	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	intron	30993901	30994269	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	CDS	30994270	30994466	1	+	2	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	exon	30994270	30994466	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	intron	30994467	30994584	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	CDS	30994585	30994791	1	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	exon	30994585	30994791	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	intron	30994792	30994968	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	CDS	30994969	30995064	1	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	exon	30994969	30995064	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	intron	30995065	30995148	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	CDS	30995149	30995337	0.99	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	exon	30995149	30995337	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	intron	30995338	30995485	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	CDS	30995486	30995671	1	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	exon	30995486	30995671	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	intron	30995672	30995766	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	CDS	30995767	30996003	1	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	exon	30995767	30996003	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	intron	30996004	30996204	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	CDS	30996205	30996339	1	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	exon	30996205	30996339	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	intron	30996340	30996454	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	CDS	30996455	30996778	0.96	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	exon	30996455	30996778	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	intron	30996779	30996884	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	CDS	30996885	30997064	0.97	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	exon	30996885	30997064	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	intron	30997065	30997228	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	CDS	30997229	30998194	0.99	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	exon	30997229	30998194	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	intron	30998195	30998287	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	CDS	30998288	30998590	1	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	exon	30998288	30998590	.	+	.	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
Ledus.S1	AUGUSTUS	stop_codon	30998591	30998593	.	+	0	transcript_id "Ledus.S1G381600.t1"; gene_id "Ledus.S1G381600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5837.t1 is derived from g3279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27231551	27232162	.	-	.	Ledus.S1G325800
Ledus.S1	AUGUSTUS	transcript	27231551	27232162	.	-	.	transcript_id "Ledus.S1G325800.t1"; gene_id "Ledus.S1G325800"
Ledus.S1	AUGUSTUS	stop_codon	27231548	27231550	.	-	0	transcript_id "Ledus.S1G325800.t1"; gene_id "Ledus.S1G325800"
Ledus.S1	AUGUSTUS	CDS	27231551	27232162	0.62	-	0	transcript_id "Ledus.S1G325800.t1"; gene_id "Ledus.S1G325800"
Ledus.S1	AUGUSTUS	exon	27231551	27232162	.	-	.	transcript_id "Ledus.S1G325800.t1"; gene_id "Ledus.S1G325800"
Ledus.S1	AUGUSTUS	start_codon	27232160	27232162	.	-	0	transcript_id "Ledus.S1G325800.t1"; gene_id "Ledus.S1G325800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1802.t1 is derived from g8665.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12678474	12682980	.	+	.	Ledus.S2G168400
Ledus.S2	AUGUSTUS	transcript	12678474	12682980	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	start_codon	12678474	12678476	.	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12678474	12678495	0.37	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12678474	12678495	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12678496	12678564	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12678565	12678644	0.64	+	2	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12678565	12678644	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12678645	12678902	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12678903	12679047	1	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12678903	12679047	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12679048	12679222	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12679223	12679362	1	+	2	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12679223	12679362	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12679363	12679507	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12679508	12679585	1	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12679508	12679585	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12679586	12679743	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12679744	12679806	1	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12679744	12679806	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12679807	12679905	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12679906	12680046	0.99	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12679906	12680046	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12680047	12680141	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12680142	12680357	0.99	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12680142	12680357	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12680358	12680525	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12680526	12680630	1	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12680526	12680630	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12680631	12680942	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12680943	12681001	1	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12680943	12681001	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12681002	12681159	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12681160	12681310	1	+	1	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12681160	12681310	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12681311	12681485	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12681486	12681641	1	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12681486	12681641	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12681642	12681769	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12681770	12681877	1	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12681770	12681877	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12681878	12681952	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12681953	12682051	1	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12681953	12682051	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12682052	12682131	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12682132	12682221	1	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12682132	12682221	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12682222	12682387	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12682388	12682478	1	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12682388	12682478	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12682479	12682574	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12682575	12682705	1	+	2	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12682575	12682705	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	intron	12682706	12682851	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	CDS	12682852	12682980	1	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	exon	12682852	12682980	.	+	.	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
Ledus.S2	AUGUSTUS	stop_codon	12682981	12682983	.	+	0	transcript_id "Ledus.S2G168400.t1"; gene_id "Ledus.S2G168400"
# This transcript jg4268.t2 is derived from g1704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4269.t1 is derived from g1705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15851683	15851889	.	-	.	Ledus.S1G169000
Ledus.S1	AUGUSTUS	transcript	15851683	15851889	.	-	.	transcript_id "Ledus.S1G169000.t1"; gene_id "Ledus.S1G169000"
Ledus.S1	AUGUSTUS	stop_codon	15851680	15851682	.	-	0	transcript_id "Ledus.S1G169000.t1"; gene_id "Ledus.S1G169000"
Ledus.S1	AUGUSTUS	CDS	15851683	15851889	0.53	-	0	transcript_id "Ledus.S1G169000.t1"; gene_id "Ledus.S1G169000"
Ledus.S1	AUGUSTUS	exon	15851683	15851889	.	-	.	transcript_id "Ledus.S1G169000.t1"; gene_id "Ledus.S1G169000"
Ledus.S1	AUGUSTUS	start_codon	15851887	15851889	.	-	0	transcript_id "Ledus.S1G169000.t1"; gene_id "Ledus.S1G169000"
# This transcript jg10082.t2 is derived from g11112.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10082.t3 is derived from g11112.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10083.t1 is derived from g11113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12561176	12561905	.	+	.	Ledus.S3G156000
Ledus.S3	AUGUSTUS	transcript	12561176	12561905	.	+	.	transcript_id "Ledus.S3G156000.t1"; gene_id "Ledus.S3G156000"
Ledus.S3	AUGUSTUS	start_codon	12561176	12561178	.	+	0	transcript_id "Ledus.S3G156000.t1"; gene_id "Ledus.S3G156000"
Ledus.S3	AUGUSTUS	CDS	12561176	12561307	0.99	+	0	transcript_id "Ledus.S3G156000.t1"; gene_id "Ledus.S3G156000"
Ledus.S3	AUGUSTUS	exon	12561176	12561307	.	+	.	transcript_id "Ledus.S3G156000.t1"; gene_id "Ledus.S3G156000"
Ledus.S3	AUGUSTUS	intron	12561308	12561390	.	+	.	transcript_id "Ledus.S3G156000.t1"; gene_id "Ledus.S3G156000"
Ledus.S3	AUGUSTUS	CDS	12561391	12561528	1	+	0	transcript_id "Ledus.S3G156000.t1"; gene_id "Ledus.S3G156000"
Ledus.S3	AUGUSTUS	exon	12561391	12561528	.	+	.	transcript_id "Ledus.S3G156000.t1"; gene_id "Ledus.S3G156000"
Ledus.S3	AUGUSTUS	intron	12561529	12561611	.	+	.	transcript_id "Ledus.S3G156000.t1"; gene_id "Ledus.S3G156000"
Ledus.S3	AUGUSTUS	CDS	12561612	12561905	0.99	+	0	transcript_id "Ledus.S3G156000.t1"; gene_id "Ledus.S3G156000"
Ledus.S3	AUGUSTUS	exon	12561612	12561905	.	+	.	transcript_id "Ledus.S3G156000.t1"; gene_id "Ledus.S3G156000"
Ledus.S3	AUGUSTUS	stop_codon	12561906	12561908	.	+	0	transcript_id "Ledus.S3G156000.t1"; gene_id "Ledus.S3G156000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3817.t1 is derived from g1253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12612477	12613262	.	+	.	Ledus.S1G123800
Ledus.S1	AUGUSTUS	transcript	12612477	12613262	.	+	.	transcript_id "Ledus.S1G123800.t1"; gene_id "Ledus.S1G123800"
Ledus.S1	AUGUSTUS	start_codon	12612477	12612479	.	+	0	transcript_id "Ledus.S1G123800.t1"; gene_id "Ledus.S1G123800"
Ledus.S1	AUGUSTUS	CDS	12612477	12613262	0.85	+	0	transcript_id "Ledus.S1G123800.t1"; gene_id "Ledus.S1G123800"
Ledus.S1	AUGUSTUS	exon	12612477	12613262	.	+	.	transcript_id "Ledus.S1G123800.t1"; gene_id "Ledus.S1G123800"
Ledus.S1	AUGUSTUS	stop_codon	12613263	12613265	.	+	0	transcript_id "Ledus.S1G123800.t1"; gene_id "Ledus.S1G123800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6021.t1 is derived from g3464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28465874	28467738	.	-	.	Ledus.S1G344200
Ledus.S1	AUGUSTUS	transcript	28465874	28467738	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	stop_codon	28465871	28465873	.	-	0	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28465874	28466050	0.86	-	0	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28465874	28466050	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28466051	28466431	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28466432	28466499	0.86	-	2	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28466432	28466499	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28466500	28466589	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28466590	28466764	0.9	-	0	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28466590	28466764	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28466765	28467076	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28467077	28467139	0.76	-	0	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28467077	28467139	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28467140	28467242	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28467243	28467313	0.58	-	2	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28467243	28467313	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28467314	28467405	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28467406	28467412	0.73	-	0	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28467406	28467412	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28467413	28467545	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28467546	28467622	0.74	-	2	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28467546	28467622	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28467623	28467710	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28467711	28467738	0.72	-	0	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28467711	28467738	.	-	.	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	start_codon	28467736	28467738	.	-	0	transcript_id "Ledus.S1G344200.t1"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	transcript	28466440	28467738	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	stop_codon	28466437	28466439	.	-	0	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28466440	28466499	0.97	-	0	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28466440	28466499	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28466500	28466645	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28466646	28466764	0.97	-	2	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28466646	28466764	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28466765	28466841	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28466842	28466903	0.36	-	1	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28466842	28466903	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28466904	28467207	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28467208	28467313	0.32	-	2	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28467208	28467313	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28467314	28467405	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28467406	28467412	0.39	-	0	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28467406	28467412	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28467413	28467545	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28467546	28467622	0.49	-	2	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28467546	28467622	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	intron	28467623	28467710	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	CDS	28467711	28467738	0.48	-	0	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	exon	28467711	28467738	.	-	.	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
Ledus.S1	AUGUSTUS	start_codon	28467736	28467738	.	-	0	transcript_id "Ledus.S1G344200.t2"; gene_id "Ledus.S1G344200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5758.t1 is derived from g3199.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26529365	26531062	.	+	.	Ledus.S1G317900
Ledus.S1	AUGUSTUS	transcript	26529365	26531062	.	+	.	transcript_id "Ledus.S1G317900.t1"; gene_id "Ledus.S1G317900"
Ledus.S1	AUGUSTUS	start_codon	26529365	26529367	.	+	0	transcript_id "Ledus.S1G317900.t1"; gene_id "Ledus.S1G317900"
Ledus.S1	AUGUSTUS	CDS	26529365	26531062	0.58	+	0	transcript_id "Ledus.S1G317900.t1"; gene_id "Ledus.S1G317900"
Ledus.S1	AUGUSTUS	exon	26529365	26531062	.	+	.	transcript_id "Ledus.S1G317900.t1"; gene_id "Ledus.S1G317900"
Ledus.S1	AUGUSTUS	stop_codon	26531063	26531065	.	+	0	transcript_id "Ledus.S1G317900.t1"; gene_id "Ledus.S1G317900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2402.t1 is derived from g9265.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17894485	17897781	.	-	.	Ledus.S2G228400
Ledus.S2	AUGUSTUS	transcript	17894485	17897781	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	stop_codon	17894482	17894484	.	-	0	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17894485	17894532	0.68	-	0	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17894485	17894532	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17894533	17894635	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17894636	17894794	1	-	0	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17894636	17894794	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17894795	17894878	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17894879	17894959	1	-	0	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17894879	17894959	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17894960	17895058	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17895059	17895160	1	-	0	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17895059	17895160	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17895161	17895283	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17895284	17895354	0.98	-	2	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17895284	17895354	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17895355	17895460	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17895461	17895584	0.99	-	0	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17895461	17895584	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17895585	17895680	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17895681	17895739	1	-	2	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17895681	17895739	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17895740	17895834	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17895835	17895904	0.97	-	0	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17895835	17895904	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17895905	17896016	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17896017	17896128	0.99	-	1	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17896017	17896128	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17896129	17896240	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17896241	17896435	1	-	1	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17896241	17896435	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17896436	17896553	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17896554	17896708	1	-	0	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17896554	17896708	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17896709	17896804	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17896805	17896852	1	-	0	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17896805	17896852	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17896853	17896988	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17896989	17897039	1	-	0	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17896989	17897039	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	intron	17897040	17897181	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	CDS	17897182	17897781	0.81	-	0	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	exon	17897182	17897781	.	-	.	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
Ledus.S2	AUGUSTUS	start_codon	17897779	17897781	.	-	0	transcript_id "Ledus.S2G228400.t1"; gene_id "Ledus.S2G228400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2945.t1 is derived from g380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4780473	4782770	.	+	.	Ledus.S1G036600
Ledus.S1	AUGUSTUS	transcript	4780473	4782770	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	start_codon	4780473	4780475	.	+	0	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	CDS	4780473	4780598	0.83	+	0	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	exon	4780473	4780598	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	intron	4780599	4780669	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	CDS	4780670	4780804	0.9	+	0	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	exon	4780670	4780804	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	intron	4780805	4780898	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	CDS	4780899	4780944	0.57	+	0	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	exon	4780899	4780944	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	intron	4780945	4781273	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	CDS	4781274	4781324	0.52	+	2	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	exon	4781274	4781324	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	intron	4781325	4781521	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	CDS	4781522	4781946	0.4	+	2	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	exon	4781522	4781946	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	intron	4781947	4782034	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	CDS	4782035	4782228	0.51	+	0	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	exon	4782035	4782228	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	intron	4782229	4782556	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	CDS	4782557	4782620	1	+	1	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	exon	4782557	4782620	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	intron	4782621	4782764	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	CDS	4782765	4782770	1	+	0	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	exon	4782765	4782770	.	+	.	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
Ledus.S1	AUGUSTUS	stop_codon	4782771	4782773	.	+	0	transcript_id "Ledus.S1G036600.t1"; gene_id "Ledus.S1G036600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12057.t1 is derived from g5676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9259160	9260877	.	+	.	Ledus.S4G121300
Ledus.S4	AUGUSTUS	transcript	9259160	9260877	.	+	.	transcript_id "Ledus.S4G121300.t1"; gene_id "Ledus.S4G121300"
Ledus.S4	AUGUSTUS	start_codon	9259160	9259162	.	+	0	transcript_id "Ledus.S4G121300.t1"; gene_id "Ledus.S4G121300"
Ledus.S4	AUGUSTUS	CDS	9259160	9260296	0.82	+	0	transcript_id "Ledus.S4G121300.t1"; gene_id "Ledus.S4G121300"
Ledus.S4	AUGUSTUS	exon	9259160	9260296	.	+	.	transcript_id "Ledus.S4G121300.t1"; gene_id "Ledus.S4G121300"
Ledus.S4	AUGUSTUS	intron	9260297	9260476	.	+	.	transcript_id "Ledus.S4G121300.t1"; gene_id "Ledus.S4G121300"
Ledus.S4	AUGUSTUS	CDS	9260477	9260649	1	+	0	transcript_id "Ledus.S4G121300.t1"; gene_id "Ledus.S4G121300"
Ledus.S4	AUGUSTUS	exon	9260477	9260649	.	+	.	transcript_id "Ledus.S4G121300.t1"; gene_id "Ledus.S4G121300"
Ledus.S4	AUGUSTUS	intron	9260650	9260741	.	+	.	transcript_id "Ledus.S4G121300.t1"; gene_id "Ledus.S4G121300"
Ledus.S4	AUGUSTUS	CDS	9260742	9260877	1	+	1	transcript_id "Ledus.S4G121300.t1"; gene_id "Ledus.S4G121300"
Ledus.S4	AUGUSTUS	exon	9260742	9260877	.	+	.	transcript_id "Ledus.S4G121300.t1"; gene_id "Ledus.S4G121300"
Ledus.S4	AUGUSTUS	stop_codon	9260878	9260880	.	+	0	transcript_id "Ledus.S4G121300.t1"; gene_id "Ledus.S4G121300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5064.t1 is derived from g2503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21423458	21424396	.	-	.	Ledus.S1G248500
Ledus.S1	AUGUSTUS	transcript	21423458	21424396	.	-	.	transcript_id "Ledus.S1G248500.t1"; gene_id "Ledus.S1G248500"
Ledus.S1	AUGUSTUS	stop_codon	21423455	21423457	.	-	0	transcript_id "Ledus.S1G248500.t1"; gene_id "Ledus.S1G248500"
Ledus.S1	AUGUSTUS	CDS	21423458	21423616	1	-	0	transcript_id "Ledus.S1G248500.t1"; gene_id "Ledus.S1G248500"
Ledus.S1	AUGUSTUS	exon	21423458	21423616	.	-	.	transcript_id "Ledus.S1G248500.t1"; gene_id "Ledus.S1G248500"
Ledus.S1	AUGUSTUS	intron	21423617	21423742	.	-	.	transcript_id "Ledus.S1G248500.t1"; gene_id "Ledus.S1G248500"
Ledus.S1	AUGUSTUS	CDS	21423743	21424396	0.9	-	0	transcript_id "Ledus.S1G248500.t1"; gene_id "Ledus.S1G248500"
Ledus.S1	AUGUSTUS	exon	21423743	21424396	.	-	.	transcript_id "Ledus.S1G248500.t1"; gene_id "Ledus.S1G248500"
Ledus.S1	AUGUSTUS	start_codon	21424394	21424396	.	-	0	transcript_id "Ledus.S1G248500.t1"; gene_id "Ledus.S1G248500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1379.t1 is derived from g8240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9601517	9605244	.	-	.	Ledus.S2G126100
Ledus.S2	AUGUSTUS	transcript	9601517	9605244	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	stop_codon	9601514	9601516	.	-	0	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9601517	9601607	1	-	1	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9601517	9601607	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	intron	9601608	9601701	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9601702	9601838	1	-	0	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9601702	9601838	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	intron	9601839	9601939	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9601940	9602233	0.99	-	0	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9601940	9602233	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	intron	9602234	9602335	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9602336	9602503	1	-	0	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9602336	9602503	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	intron	9602504	9602587	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9602588	9602632	1	-	0	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9602588	9602632	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	intron	9602633	9602731	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9602732	9602836	1	-	0	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9602732	9602836	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	intron	9602837	9602907	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9602908	9603154	0.97	-	1	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9602908	9603154	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	intron	9603155	9603468	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9603469	9603602	0.94	-	0	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9603469	9603602	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	intron	9603603	9603666	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9603667	9603738	1	-	0	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9603667	9603738	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	intron	9603739	9603813	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9603814	9603862	0.99	-	1	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9603814	9603862	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	intron	9603863	9603990	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9603991	9604456	1	-	2	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9603991	9604456	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	intron	9604457	9604535	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9604536	9604836	1	-	0	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9604536	9604836	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	intron	9604837	9604914	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	CDS	9604915	9605244	1	-	0	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	exon	9604915	9605244	.	-	.	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
Ledus.S2	AUGUSTUS	start_codon	9605242	9605244	.	-	0	transcript_id "Ledus.S2G126100.t1"; gene_id "Ledus.S2G126100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1666.t1 is derived from g8527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11767475	11769344	.	-	.	Ledus.S2G154800
Ledus.S2	AUGUSTUS	transcript	11767475	11769344	.	-	.	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	stop_codon	11767472	11767474	.	-	0	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	CDS	11767475	11767939	0.97	-	0	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	exon	11767475	11767939	.	-	.	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	intron	11767940	11768034	.	-	.	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	CDS	11768035	11768319	1	-	0	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	exon	11768035	11768319	.	-	.	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	intron	11768320	11768388	.	-	.	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	CDS	11768389	11768730	1	-	0	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	exon	11768389	11768730	.	-	.	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	intron	11768731	11768810	.	-	.	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	CDS	11768811	11769130	1	-	2	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	exon	11768811	11769130	.	-	.	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	intron	11769131	11769202	.	-	.	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	CDS	11769203	11769344	0.88	-	0	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	exon	11769203	11769344	.	-	.	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
Ledus.S2	AUGUSTUS	start_codon	11769342	11769344	.	-	0	transcript_id "Ledus.S2G154800.t1"; gene_id "Ledus.S2G154800"
# This transcript jg10404.t2 is derived from g11434.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10404.t3 is derived from g11434.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10404.t4 is derived from g11434.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10405.t1 is derived from g11435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14863621	14864560	.	-	.	Ledus.S3G188200
Ledus.S3	AUGUSTUS	transcript	14863621	14864560	.	-	.	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	stop_codon	14863618	14863620	.	-	0	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	CDS	14863621	14863794	1	-	0	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	exon	14863621	14863794	.	-	.	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	intron	14863795	14863889	.	-	.	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	CDS	14863890	14864026	1	-	2	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	exon	14863890	14864026	.	-	.	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	intron	14864027	14864110	.	-	.	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	CDS	14864111	14864247	1	-	1	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	exon	14864111	14864247	.	-	.	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	intron	14864248	14864336	.	-	.	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	CDS	14864337	14864560	0.99	-	0	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	exon	14864337	14864560	.	-	.	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
Ledus.S3	AUGUSTUS	start_codon	14864558	14864560	.	-	0	transcript_id "Ledus.S3G188200.t1"; gene_id "Ledus.S3G188200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11006.t1 is derived from g4624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1077671	1078833	.	+	.	Ledus.S4G016200
Ledus.S4	AUGUSTUS	transcript	1077671	1078833	.	+	.	transcript_id "Ledus.S4G016200.t1"; gene_id "Ledus.S4G016200"
Ledus.S4	AUGUSTUS	start_codon	1077671	1077673	.	+	0	transcript_id "Ledus.S4G016200.t1"; gene_id "Ledus.S4G016200"
Ledus.S4	AUGUSTUS	CDS	1077671	1078550	0.88	+	0	transcript_id "Ledus.S4G016200.t1"; gene_id "Ledus.S4G016200"
Ledus.S4	AUGUSTUS	exon	1077671	1078550	.	+	.	transcript_id "Ledus.S4G016200.t1"; gene_id "Ledus.S4G016200"
Ledus.S4	AUGUSTUS	intron	1078551	1078641	.	+	.	transcript_id "Ledus.S4G016200.t1"; gene_id "Ledus.S4G016200"
Ledus.S4	AUGUSTUS	CDS	1078642	1078725	1	+	2	transcript_id "Ledus.S4G016200.t1"; gene_id "Ledus.S4G016200"
Ledus.S4	AUGUSTUS	exon	1078642	1078725	.	+	.	transcript_id "Ledus.S4G016200.t1"; gene_id "Ledus.S4G016200"
Ledus.S4	AUGUSTUS	intron	1078726	1078819	.	+	.	transcript_id "Ledus.S4G016200.t1"; gene_id "Ledus.S4G016200"
Ledus.S4	AUGUSTUS	CDS	1078820	1078833	0.93	+	2	transcript_id "Ledus.S4G016200.t1"; gene_id "Ledus.S4G016200"
Ledus.S4	AUGUSTUS	exon	1078820	1078833	.	+	.	transcript_id "Ledus.S4G016200.t1"; gene_id "Ledus.S4G016200"
Ledus.S4	AUGUSTUS	stop_codon	1078834	1078836	.	+	0	transcript_id "Ledus.S4G016200.t1"; gene_id "Ledus.S4G016200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3130.t1 is derived from g565.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6165851	6168505	.	+	.	Ledus.S1G055100
Ledus.S1	AUGUSTUS	transcript	6165851	6168505	.	+	.	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	start_codon	6165851	6165853	.	+	0	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	CDS	6165851	6167018	0.82	+	0	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	exon	6165851	6167018	.	+	.	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	intron	6167019	6167258	.	+	.	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	CDS	6167259	6167494	0.71	+	2	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	exon	6167259	6167494	.	+	.	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	intron	6167495	6167609	.	+	.	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	CDS	6167610	6167725	0.86	+	0	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	exon	6167610	6167725	.	+	.	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	intron	6167726	6167804	.	+	.	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	CDS	6167805	6167827	0.78	+	1	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	exon	6167805	6167827	.	+	.	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	intron	6167828	6167996	.	+	.	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	CDS	6167997	6168505	0.97	+	2	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	exon	6167997	6168505	.	+	.	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	stop_codon	6168506	6168508	.	+	0	transcript_id "Ledus.S1G055100.t1"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	transcript	6165851	6168505	.	+	.	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	start_codon	6165851	6165853	.	+	0	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	CDS	6165851	6167018	0.68	+	0	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	exon	6165851	6167018	.	+	.	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	intron	6167019	6167392	.	+	.	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	CDS	6167393	6167494	0.51	+	2	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	exon	6167393	6167494	.	+	.	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	intron	6167495	6167804	.	+	.	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	CDS	6167805	6167909	0.9	+	2	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	exon	6167805	6167909	.	+	.	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	intron	6167910	6167996	.	+	.	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	CDS	6167997	6168505	0.9	+	2	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	exon	6167997	6168505	.	+	.	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
Ledus.S1	AUGUSTUS	stop_codon	6168506	6168508	.	+	0	transcript_id "Ledus.S1G055100.t2"; gene_id "Ledus.S1G055100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6677.t1 is derived from g4120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33081841	33083516	.	+	.	Ledus.S1G409800
Ledus.S1	AUGUSTUS	transcript	33081841	33083516	.	+	.	transcript_id "Ledus.S1G409800.t1"; gene_id "Ledus.S1G409800"
Ledus.S1	AUGUSTUS	start_codon	33081841	33081843	.	+	0	transcript_id "Ledus.S1G409800.t1"; gene_id "Ledus.S1G409800"
Ledus.S1	AUGUSTUS	CDS	33081841	33082035	0.92	+	0	transcript_id "Ledus.S1G409800.t1"; gene_id "Ledus.S1G409800"
Ledus.S1	AUGUSTUS	exon	33081841	33082035	.	+	.	transcript_id "Ledus.S1G409800.t1"; gene_id "Ledus.S1G409800"
Ledus.S1	AUGUSTUS	intron	33082036	33082124	.	+	.	transcript_id "Ledus.S1G409800.t1"; gene_id "Ledus.S1G409800"
Ledus.S1	AUGUSTUS	CDS	33082125	33082224	1	+	0	transcript_id "Ledus.S1G409800.t1"; gene_id "Ledus.S1G409800"
Ledus.S1	AUGUSTUS	exon	33082125	33082224	.	+	.	transcript_id "Ledus.S1G409800.t1"; gene_id "Ledus.S1G409800"
Ledus.S1	AUGUSTUS	intron	33082225	33082428	.	+	.	transcript_id "Ledus.S1G409800.t1"; gene_id "Ledus.S1G409800"
Ledus.S1	AUGUSTUS	CDS	33082429	33083516	1	+	2	transcript_id "Ledus.S1G409800.t1"; gene_id "Ledus.S1G409800"
Ledus.S1	AUGUSTUS	exon	33082429	33083516	.	+	.	transcript_id "Ledus.S1G409800.t1"; gene_id "Ledus.S1G409800"
Ledus.S1	AUGUSTUS	stop_codon	33083517	33083519	.	+	0	transcript_id "Ledus.S1G409800.t1"; gene_id "Ledus.S1G409800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10972.t1 is derived from g4590.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	953067	954004	.	-	.	Ledus.S4G012800
Ledus.S4	AUGUSTUS	transcript	953067	954004	.	-	.	transcript_id "Ledus.S4G012800.t1"; gene_id "Ledus.S4G012800"
Ledus.S4	AUGUSTUS	stop_codon	953064	953066	.	-	0	transcript_id "Ledus.S4G012800.t1"; gene_id "Ledus.S4G012800"
Ledus.S4	AUGUSTUS	CDS	953067	953642	1	-	0	transcript_id "Ledus.S4G012800.t1"; gene_id "Ledus.S4G012800"
Ledus.S4	AUGUSTUS	exon	953067	953642	.	-	.	transcript_id "Ledus.S4G012800.t1"; gene_id "Ledus.S4G012800"
Ledus.S4	AUGUSTUS	intron	953643	953722	.	-	.	transcript_id "Ledus.S4G012800.t1"; gene_id "Ledus.S4G012800"
Ledus.S4	AUGUSTUS	CDS	953723	954004	0.98	-	0	transcript_id "Ledus.S4G012800.t1"; gene_id "Ledus.S4G012800"
Ledus.S4	AUGUSTUS	exon	953723	954004	.	-	.	transcript_id "Ledus.S4G012800.t1"; gene_id "Ledus.S4G012800"
Ledus.S4	AUGUSTUS	start_codon	954002	954004	.	-	0	transcript_id "Ledus.S4G012800.t1"; gene_id "Ledus.S4G012800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9243.t1 is derived from g10273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5590293	5591807	.	-	.	Ledus.S3G072000
Ledus.S3	AUGUSTUS	transcript	5590293	5591807	.	-	.	transcript_id "Ledus.S3G072000.t1"; gene_id "Ledus.S3G072000"
Ledus.S3	AUGUSTUS	stop_codon	5590290	5590292	.	-	0	transcript_id "Ledus.S3G072000.t1"; gene_id "Ledus.S3G072000"
Ledus.S3	AUGUSTUS	CDS	5590293	5590483	0.75	-	2	transcript_id "Ledus.S3G072000.t1"; gene_id "Ledus.S3G072000"
Ledus.S3	AUGUSTUS	exon	5590293	5590483	.	-	.	transcript_id "Ledus.S3G072000.t1"; gene_id "Ledus.S3G072000"
Ledus.S3	AUGUSTUS	intron	5590484	5590631	.	-	.	transcript_id "Ledus.S3G072000.t1"; gene_id "Ledus.S3G072000"
Ledus.S3	AUGUSTUS	CDS	5590632	5591476	0.93	-	1	transcript_id "Ledus.S3G072000.t1"; gene_id "Ledus.S3G072000"
Ledus.S3	AUGUSTUS	exon	5590632	5591476	.	-	.	transcript_id "Ledus.S3G072000.t1"; gene_id "Ledus.S3G072000"
Ledus.S3	AUGUSTUS	intron	5591477	5591550	.	-	.	transcript_id "Ledus.S3G072000.t1"; gene_id "Ledus.S3G072000"
Ledus.S3	AUGUSTUS	CDS	5591551	5591807	0.69	-	0	transcript_id "Ledus.S3G072000.t1"; gene_id "Ledus.S3G072000"
Ledus.S3	AUGUSTUS	exon	5591551	5591807	.	-	.	transcript_id "Ledus.S3G072000.t1"; gene_id "Ledus.S3G072000"
Ledus.S3	AUGUSTUS	start_codon	5591805	5591807	.	-	0	transcript_id "Ledus.S3G072000.t1"; gene_id "Ledus.S3G072000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13066.t1 is derived from g6876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4795590	4796027	.	+	.	Ledus.S6G012800
Ledus.S6	AUGUSTUS	transcript	4795590	4796027	.	+	.	transcript_id "Ledus.S6G012800.t1"; gene_id "Ledus.S6G012800"
Ledus.S6	AUGUSTUS	start_codon	4795590	4795592	.	+	0	transcript_id "Ledus.S6G012800.t1"; gene_id "Ledus.S6G012800"
Ledus.S6	AUGUSTUS	CDS	4795590	4796027	0.83	+	0	transcript_id "Ledus.S6G012800.t1"; gene_id "Ledus.S6G012800"
Ledus.S6	AUGUSTUS	exon	4795590	4796027	.	+	.	transcript_id "Ledus.S6G012800.t1"; gene_id "Ledus.S6G012800"
Ledus.S6	AUGUSTUS	stop_codon	4796028	4796030	.	+	0	transcript_id "Ledus.S6G012800.t1"; gene_id "Ledus.S6G012800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5363.t1 is derived from g2802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23678292	23688704	.	+	.	Ledus.S1G278400
Ledus.S1	AUGUSTUS	transcript	23678292	23688704	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	start_codon	23678292	23678294	.	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23678292	23679202	0.76	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23678292	23679202	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23679203	23679459	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23679460	23679637	0.98	+	1	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23679460	23679637	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23679638	23679741	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23679742	23679840	0.99	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23679742	23679840	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23679841	23680050	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23680051	23680182	1	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23680051	23680182	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23680183	23680284	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23680285	23680730	0.94	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23680285	23680730	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23680731	23680836	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23680837	23680951	1	+	1	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23680837	23680951	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23680952	23681077	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23681078	23681203	1	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23681078	23681203	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23681204	23681287	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23681288	23681560	1	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23681288	23681560	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23681561	23681637	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23681638	23681757	1	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23681638	23681757	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23681758	23681847	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23681848	23682060	1	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23681848	23682060	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23682061	23682216	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23682217	23682336	1	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23682217	23682336	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23682337	23682423	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23682424	23682609	0.6	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23682424	23682609	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23682610	23682757	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23682758	23683123	0.99	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23682758	23683123	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23683124	23683265	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23683266	23683355	0.69	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23683266	23683355	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23683356	23683500	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23683501	23683770	0.93	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23683501	23683770	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23683771	23683883	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23683884	23684007	1	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23683884	23684007	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23684008	23684112	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23684113	23685207	0.9	+	2	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23684113	23685207	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23685208	23685333	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23685334	23685577	0.51	+	2	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23685334	23685577	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23685578	23685653	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23685654	23685741	0.88	+	1	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23685654	23685741	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23685742	23685842	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23685843	23686037	0.73	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23685843	23686037	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23686038	23686147	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23686148	23686203	0.93	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23686148	23686203	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23686204	23686315	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23686316	23686536	0.92	+	1	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23686316	23686536	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23686537	23686628	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23686629	23686854	0.97	+	2	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23686629	23686854	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23686855	23686967	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23686968	23687565	0.98	+	1	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23686968	23687565	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23687566	23687647	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23687648	23687932	1	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23687648	23687932	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23687933	23688002	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23688003	23688090	1	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23688003	23688090	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	intron	23688091	23688180	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	CDS	23688181	23688704	0.98	+	2	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	exon	23688181	23688704	.	+	.	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
Ledus.S1	AUGUSTUS	stop_codon	23688705	23688707	.	+	0	transcript_id "Ledus.S1G278400.t1"; gene_id "Ledus.S1G278400"
# This transcript jg217.t2 is derived from g7078.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg218.t1 is derived from g7079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	958430	959121	.	+	.	Ledus.S2G010000
Ledus.S2	AUGUSTUS	transcript	958430	959121	.	+	.	transcript_id "Ledus.S2G010000.t1"; gene_id "Ledus.S2G010000"
Ledus.S2	AUGUSTUS	start_codon	958430	958432	.	+	0	transcript_id "Ledus.S2G010000.t1"; gene_id "Ledus.S2G010000"
Ledus.S2	AUGUSTUS	CDS	958430	958553	0.94	+	0	transcript_id "Ledus.S2G010000.t1"; gene_id "Ledus.S2G010000"
Ledus.S2	AUGUSTUS	exon	958430	958553	.	+	.	transcript_id "Ledus.S2G010000.t1"; gene_id "Ledus.S2G010000"
Ledus.S2	AUGUSTUS	intron	958554	958644	.	+	.	transcript_id "Ledus.S2G010000.t1"; gene_id "Ledus.S2G010000"
Ledus.S2	AUGUSTUS	CDS	958645	958859	1	+	2	transcript_id "Ledus.S2G010000.t1"; gene_id "Ledus.S2G010000"
Ledus.S2	AUGUSTUS	exon	958645	958859	.	+	.	transcript_id "Ledus.S2G010000.t1"; gene_id "Ledus.S2G010000"
Ledus.S2	AUGUSTUS	intron	958860	958959	.	+	.	transcript_id "Ledus.S2G010000.t1"; gene_id "Ledus.S2G010000"
Ledus.S2	AUGUSTUS	CDS	958960	959121	1	+	0	transcript_id "Ledus.S2G010000.t1"; gene_id "Ledus.S2G010000"
Ledus.S2	AUGUSTUS	exon	958960	959121	.	+	.	transcript_id "Ledus.S2G010000.t1"; gene_id "Ledus.S2G010000"
Ledus.S2	AUGUSTUS	stop_codon	959122	959124	.	+	0	transcript_id "Ledus.S2G010000.t1"; gene_id "Ledus.S2G010000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg258.t1 is derived from g7119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1214030	1214323	.	+	.	Ledus.S2G014000
Ledus.S2	AUGUSTUS	transcript	1214030	1214323	.	+	.	transcript_id "Ledus.S2G014000.t1"; gene_id "Ledus.S2G014000"
Ledus.S2	AUGUSTUS	start_codon	1214030	1214032	.	+	0	transcript_id "Ledus.S2G014000.t1"; gene_id "Ledus.S2G014000"
Ledus.S2	AUGUSTUS	CDS	1214030	1214323	0.99	+	0	transcript_id "Ledus.S2G014000.t1"; gene_id "Ledus.S2G014000"
Ledus.S2	AUGUSTUS	exon	1214030	1214323	.	+	.	transcript_id "Ledus.S2G014000.t1"; gene_id "Ledus.S2G014000"
Ledus.S2	AUGUSTUS	stop_codon	1214324	1214326	.	+	0	transcript_id "Ledus.S2G014000.t1"; gene_id "Ledus.S2G014000"
# This transcript jg5887.t2 is derived from g3329.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5888.t1 is derived from g3330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27598489	27602022	.	+	.	Ledus.S1G330900
Ledus.S1	AUGUSTUS	transcript	27598489	27602022	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	start_codon	27598489	27598491	.	+	0	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27598489	27598734	0.89	+	0	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27598489	27598734	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27598735	27599023	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27599024	27599094	0.96	+	0	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27599024	27599094	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27599095	27599222	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27599223	27599237	0.79	+	1	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27599223	27599237	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27599238	27599479	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27599480	27599612	0.65	+	1	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27599480	27599612	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27599613	27599793	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27599794	27599893	0.93	+	0	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27599794	27599893	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27599894	27600002	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27600003	27600065	0.67	+	2	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27600003	27600065	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27600066	27600219	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27600220	27600330	0.96	+	2	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27600220	27600330	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27600331	27600420	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27600421	27600608	1	+	2	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27600421	27600608	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27600609	27600706	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27600707	27600842	0.92	+	0	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27600707	27600842	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27600843	27600931	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27600932	27601046	1	+	2	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27600932	27601046	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27601047	27601163	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27601164	27601265	1	+	1	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27601164	27601265	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27601266	27601382	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27601383	27601625	1	+	1	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27601383	27601625	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27601626	27601796	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27601797	27601908	1	+	1	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27601797	27601908	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	intron	27601909	27602001	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	CDS	27602002	27602022	1	+	0	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	exon	27602002	27602022	.	+	.	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
Ledus.S1	AUGUSTUS	stop_codon	27602023	27602025	.	+	0	transcript_id "Ledus.S1G330900.t1"; gene_id "Ledus.S1G330900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4138.t1 is derived from g1574.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14912399	14913175	.	-	.	Ledus.S1G155900
Ledus.S1	AUGUSTUS	transcript	14912399	14913175	.	-	.	transcript_id "Ledus.S1G155900.t1"; gene_id "Ledus.S1G155900"
Ledus.S1	AUGUSTUS	stop_codon	14912396	14912398	.	-	0	transcript_id "Ledus.S1G155900.t1"; gene_id "Ledus.S1G155900"
Ledus.S1	AUGUSTUS	CDS	14912399	14913175	0.96	-	0	transcript_id "Ledus.S1G155900.t1"; gene_id "Ledus.S1G155900"
Ledus.S1	AUGUSTUS	exon	14912399	14913175	.	-	.	transcript_id "Ledus.S1G155900.t1"; gene_id "Ledus.S1G155900"
Ledus.S1	AUGUSTUS	start_codon	14913173	14913175	.	-	0	transcript_id "Ledus.S1G155900.t1"; gene_id "Ledus.S1G155900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8798.t1 is derived from g9828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2036517	2039524	.	-	.	Ledus.S3G027500
Ledus.S3	AUGUSTUS	transcript	2036517	2039524	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	stop_codon	2036514	2036516	.	-	0	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2036517	2036577	0.74	-	1	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2036517	2036577	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2036578	2036670	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2036671	2036858	0.79	-	0	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2036671	2036858	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2036859	2036968	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2036969	2037033	0.63	-	2	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2036969	2037033	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2037034	2037156	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2037157	2037312	1	-	2	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2037157	2037312	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2037313	2037389	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2037390	2037527	1	-	2	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2037390	2037527	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2037528	2037651	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2037652	2037723	1	-	2	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2037652	2037723	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2037724	2037845	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2037846	2037925	1	-	1	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2037846	2037925	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2037926	2038010	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2038011	2038175	0.99	-	1	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2038011	2038175	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2038176	2038282	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2038283	2038422	0.82	-	0	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2038283	2038422	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2038423	2038510	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2038511	2038662	1	-	2	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2038511	2038662	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2038663	2038759	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2038760	2038920	1	-	1	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2038760	2038920	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2038921	2039014	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2039015	2039106	1	-	0	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2039015	2039106	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2039107	2039201	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2039202	2039281	1	-	2	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2039202	2039281	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	intron	2039282	2039379	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	CDS	2039380	2039524	1	-	0	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	exon	2039380	2039524	.	-	.	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
Ledus.S3	AUGUSTUS	start_codon	2039522	2039524	.	-	0	transcript_id "Ledus.S3G027500.t1"; gene_id "Ledus.S3G027500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg709.t1 is derived from g7570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4343427	4344224	.	+	.	Ledus.S2G059100
Ledus.S2	AUGUSTUS	transcript	4343427	4344224	.	+	.	transcript_id "Ledus.S2G059100.t1"; gene_id "Ledus.S2G059100"
Ledus.S2	AUGUSTUS	start_codon	4343427	4343429	.	+	0	transcript_id "Ledus.S2G059100.t1"; gene_id "Ledus.S2G059100"
Ledus.S2	AUGUSTUS	CDS	4343427	4344224	0.8	+	0	transcript_id "Ledus.S2G059100.t1"; gene_id "Ledus.S2G059100"
Ledus.S2	AUGUSTUS	exon	4343427	4344224	.	+	.	transcript_id "Ledus.S2G059100.t1"; gene_id "Ledus.S2G059100"
Ledus.S2	AUGUSTUS	stop_codon	4344225	4344227	.	+	0	transcript_id "Ledus.S2G059100.t1"; gene_id "Ledus.S2G059100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5289.t1 is derived from g2728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22863532	22870378	.	+	.	Ledus.S1G271000
Ledus.S1	AUGUSTUS	transcript	22863532	22870378	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	start_codon	22863532	22863534	.	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22863532	22864419	0.99	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22863532	22864419	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22864420	22864503	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22864504	22864748	0.97	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22864504	22864748	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22864749	22864876	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22864877	22865085	0.97	+	1	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22864877	22865085	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22865086	22865179	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22865180	22865262	0.96	+	2	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22865180	22865262	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22865263	22865374	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22865375	22865488	0.97	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22865375	22865488	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22865489	22865571	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22865572	22865760	1	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22865572	22865760	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22865761	22865853	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22865854	22865928	1	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22865854	22865928	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22865929	22866079	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22866080	22866139	1	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22866080	22866139	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22866140	22866242	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22866243	22866386	0.97	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22866243	22866386	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22866387	22866481	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22866482	22866592	0.76	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22866482	22866592	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22866593	22866716	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22866717	22866824	0.99	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22866717	22866824	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22866825	22866971	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22866972	22867131	1	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22866972	22867131	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22867132	22867267	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22867268	22868574	0.29	+	2	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22867268	22868574	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22868575	22868706	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22868707	22868775	0.39	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22868707	22868775	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22868776	22868917	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22868918	22869116	1	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22868918	22869116	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22869117	22869206	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22869207	22869438	1	+	2	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22869207	22869438	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22869439	22869538	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22869539	22869694	1	+	1	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22869539	22869694	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22869695	22869782	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22869783	22869997	0.97	+	1	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22869783	22869997	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	intron	22869998	22870286	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	CDS	22870287	22870378	0.96	+	2	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	exon	22870287	22870378	.	+	.	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
Ledus.S1	AUGUSTUS	stop_codon	22870379	22870381	.	+	0	transcript_id "Ledus.S1G271000.t1"; gene_id "Ledus.S1G271000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4888.t1 is derived from g2326.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20547054	20549414	.	-	.	Ledus.S1G230900
Ledus.S1	AUGUSTUS	transcript	20547054	20549414	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	stop_codon	20547051	20547053	.	-	0	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	CDS	20547054	20547567	0.98	-	1	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	exon	20547054	20547567	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	intron	20547568	20547682	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	CDS	20547683	20547751	1	-	1	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	exon	20547683	20547751	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	intron	20547752	20547884	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	CDS	20547885	20548035	1	-	2	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	exon	20547885	20548035	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	intron	20548036	20548125	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	CDS	20548126	20548193	1	-	1	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	exon	20548126	20548193	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	intron	20548194	20548280	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	CDS	20548281	20548488	0.94	-	2	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	exon	20548281	20548488	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	intron	20548489	20548573	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	CDS	20548574	20548796	1	-	0	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	exon	20548574	20548796	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	intron	20548797	20548887	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	CDS	20548888	20548983	1	-	0	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	exon	20548888	20548983	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	intron	20548984	20549279	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	CDS	20549280	20549414	0.55	-	0	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	exon	20549280	20549414	.	-	.	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
Ledus.S1	AUGUSTUS	start_codon	20549412	20549414	.	-	0	transcript_id "Ledus.S1G230900.t1"; gene_id "Ledus.S1G230900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8214.t1 is derived from g12885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9941574	9941939	.	+	.	Ledus.S5G099200
Ledus.S5	AUGUSTUS	transcript	9941574	9941939	.	+	.	transcript_id "Ledus.S5G099200.t1"; gene_id "Ledus.S5G099200"
Ledus.S5	AUGUSTUS	start_codon	9941574	9941576	.	+	0	transcript_id "Ledus.S5G099200.t1"; gene_id "Ledus.S5G099200"
Ledus.S5	AUGUSTUS	CDS	9941574	9941939	0.75	+	0	transcript_id "Ledus.S5G099200.t1"; gene_id "Ledus.S5G099200"
Ledus.S5	AUGUSTUS	exon	9941574	9941939	.	+	.	transcript_id "Ledus.S5G099200.t1"; gene_id "Ledus.S5G099200"
Ledus.S5	AUGUSTUS	stop_codon	9941940	9941942	.	+	0	transcript_id "Ledus.S5G099200.t1"; gene_id "Ledus.S5G099200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7548.t1 is derived from g12219.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3840202	3840408	.	+	.	Ledus.S5G032600
Ledus.S5	AUGUSTUS	transcript	3840202	3840408	.	+	.	transcript_id "Ledus.S5G032600.t1"; gene_id "Ledus.S5G032600"
Ledus.S5	AUGUSTUS	start_codon	3840202	3840204	.	+	0	transcript_id "Ledus.S5G032600.t1"; gene_id "Ledus.S5G032600"
Ledus.S5	AUGUSTUS	CDS	3840202	3840408	0.61	+	0	transcript_id "Ledus.S5G032600.t1"; gene_id "Ledus.S5G032600"
Ledus.S5	AUGUSTUS	exon	3840202	3840408	.	+	.	transcript_id "Ledus.S5G032600.t1"; gene_id "Ledus.S5G032600"
Ledus.S5	AUGUSTUS	stop_codon	3840409	3840411	.	+	0	transcript_id "Ledus.S5G032600.t1"; gene_id "Ledus.S5G032600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3763.t1 is derived from g1199.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11738813	11740676	.	+	.	Ledus.S1G118400
Ledus.S1	AUGUSTUS	transcript	11738813	11740676	.	+	.	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	start_codon	11738813	11738815	.	+	0	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	CDS	11738813	11739419	0.93	+	0	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	exon	11738813	11739419	.	+	.	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	intron	11739420	11739511	.	+	.	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	CDS	11739512	11739813	0.91	+	2	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	exon	11739512	11739813	.	+	.	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	intron	11739814	11739995	.	+	.	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	CDS	11739996	11740484	0.83	+	0	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	exon	11739996	11740484	.	+	.	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	intron	11740485	11740589	.	+	.	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	CDS	11740590	11740676	0.95	+	0	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	exon	11740590	11740676	.	+	.	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
Ledus.S1	AUGUSTUS	stop_codon	11740677	11740679	.	+	0	transcript_id "Ledus.S1G118400.t1"; gene_id "Ledus.S1G118400"
# This transcript jg11939.t2 is derived from g5558.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11939.t3 is derived from g5558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11940.t1 is derived from g5559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7896720	7898724	.	+	.	Ledus.S4G109600
Ledus.S4	AUGUSTUS	transcript	7896720	7898724	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	start_codon	7896720	7896722	.	+	0	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	CDS	7896720	7896762	0.99	+	0	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	exon	7896720	7896762	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	intron	7896763	7897288	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	CDS	7897289	7897447	1	+	2	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	exon	7897289	7897447	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	intron	7897448	7897565	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	CDS	7897566	7897741	0.78	+	2	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	exon	7897566	7897741	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	intron	7897742	7897848	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	CDS	7897849	7898114	1	+	0	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	exon	7897849	7898114	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	intron	7898115	7898216	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	CDS	7898217	7898352	1	+	1	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	exon	7898217	7898352	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	intron	7898353	7898433	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	CDS	7898434	7898545	1	+	0	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	exon	7898434	7898545	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	intron	7898546	7898629	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	CDS	7898630	7898724	0.79	+	2	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	exon	7898630	7898724	.	+	.	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
Ledus.S4	AUGUSTUS	stop_codon	7898725	7898727	.	+	0	transcript_id "Ledus.S4G109600.t1"; gene_id "Ledus.S4G109600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg199.t1 is derived from g7060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	777495	779496	.	+	.	Ledus.S2G008100
Ledus.S2	AUGUSTUS	transcript	777495	779496	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	start_codon	777495	777497	.	+	0	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	CDS	777495	777518	0.73	+	0	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	exon	777495	777518	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	intron	777519	777598	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	CDS	777599	777635	1	+	0	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	exon	777599	777635	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	intron	777636	778056	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	CDS	778057	778194	1	+	2	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	exon	778057	778194	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	intron	778195	778496	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	CDS	778497	778612	1	+	2	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	exon	778497	778612	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	intron	778613	778719	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	CDS	778720	778811	0.99	+	0	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	exon	778720	778811	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	intron	778812	778985	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	CDS	778986	779007	1	+	1	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	exon	778986	779007	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	intron	779008	779092	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	CDS	779093	779161	1	+	0	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	exon	779093	779161	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	intron	779162	779242	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	CDS	779243	779311	0.59	+	0	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	exon	779243	779311	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	intron	779312	779418	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	CDS	779419	779496	0.54	+	0	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	exon	779419	779496	.	+	.	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
Ledus.S2	AUGUSTUS	stop_codon	779497	779499	.	+	0	transcript_id "Ledus.S2G008100.t1"; gene_id "Ledus.S2G008100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg239.t1 is derived from g7100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1054274	1054628	.	-	.	Ledus.S2G012100
Ledus.S2	AUGUSTUS	transcript	1054274	1054628	.	-	.	transcript_id "Ledus.S2G012100.t1"; gene_id "Ledus.S2G012100"
Ledus.S2	AUGUSTUS	stop_codon	1054271	1054273	.	-	0	transcript_id "Ledus.S2G012100.t1"; gene_id "Ledus.S2G012100"
Ledus.S2	AUGUSTUS	CDS	1054274	1054303	1	-	0	transcript_id "Ledus.S2G012100.t1"; gene_id "Ledus.S2G012100"
Ledus.S2	AUGUSTUS	exon	1054274	1054303	.	-	.	transcript_id "Ledus.S2G012100.t1"; gene_id "Ledus.S2G012100"
Ledus.S2	AUGUSTUS	intron	1054304	1054390	.	-	.	transcript_id "Ledus.S2G012100.t1"; gene_id "Ledus.S2G012100"
Ledus.S2	AUGUSTUS	CDS	1054391	1054488	1	-	2	transcript_id "Ledus.S2G012100.t1"; gene_id "Ledus.S2G012100"
Ledus.S2	AUGUSTUS	exon	1054391	1054488	.	-	.	transcript_id "Ledus.S2G012100.t1"; gene_id "Ledus.S2G012100"
Ledus.S2	AUGUSTUS	intron	1054489	1054558	.	-	.	transcript_id "Ledus.S2G012100.t1"; gene_id "Ledus.S2G012100"
Ledus.S2	AUGUSTUS	CDS	1054559	1054628	0.62	-	0	transcript_id "Ledus.S2G012100.t1"; gene_id "Ledus.S2G012100"
Ledus.S2	AUGUSTUS	exon	1054559	1054628	.	-	.	transcript_id "Ledus.S2G012100.t1"; gene_id "Ledus.S2G012100"
Ledus.S2	AUGUSTUS	start_codon	1054626	1054628	.	-	0	transcript_id "Ledus.S2G012100.t1"; gene_id "Ledus.S2G012100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10818.t1 is derived from g11850.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18027934	18032290	.	-	.	Ledus.S3G229500
Ledus.S3	AUGUSTUS	transcript	18027934	18032290	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	stop_codon	18027931	18027933	.	-	0	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18027934	18028363	1	-	1	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18027934	18028363	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18028364	18028449	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18028450	18028536	1	-	1	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18028450	18028536	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18028537	18028656	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18028657	18029055	0.92	-	1	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18028657	18029055	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18029056	18029158	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18029159	18029384	0.78	-	2	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18029159	18029384	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18029385	18029495	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18029496	18029653	0.95	-	1	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18029496	18029653	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18029654	18029739	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18029740	18030103	0.99	-	2	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18029740	18030103	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18030104	18030277	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18030278	18030435	1	-	1	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18030278	18030435	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18030436	18030917	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18030918	18031035	1	-	2	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18030918	18031035	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18031036	18031129	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18031130	18031168	1	-	2	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18031130	18031168	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18031169	18031274	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18031275	18031299	1	-	0	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18031275	18031299	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18031300	18031427	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18031428	18031516	1	-	2	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18031428	18031516	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18031517	18031817	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18031818	18031872	1	-	0	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18031818	18031872	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18031873	18032015	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18032016	18032104	1	-	2	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18032016	18032104	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18032105	18032262	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18032263	18032290	0.94	-	0	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18032263	18032290	.	-	.	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	start_codon	18032288	18032290	.	-	0	transcript_id "Ledus.S3G229500.t1"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	transcript	18027934	18032290	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	stop_codon	18027931	18027933	.	-	0	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18027934	18028363	1	-	1	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18027934	18028363	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18028364	18028449	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18028450	18028536	1	-	1	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18028450	18028536	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18028537	18028656	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18028657	18029055	0.95	-	1	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18028657	18029055	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18029056	18029158	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18029159	18029336	0.62	-	2	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18029159	18029336	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18029337	18029495	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18029496	18029653	1	-	1	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18029496	18029653	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18029654	18029739	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18029740	18030103	1	-	2	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18029740	18030103	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18030104	18030277	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18030278	18030435	0.49	-	1	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18030278	18030435	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18030436	18030614	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18030615	18030638	0.27	-	1	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18030615	18030638	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18030639	18030917	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18030918	18031035	1	-	2	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18030918	18031035	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18031036	18031129	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18031130	18031168	1	-	2	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18031130	18031168	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18031169	18031274	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18031275	18031299	1	-	0	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18031275	18031299	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18031300	18031427	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18031428	18031516	1	-	2	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18031428	18031516	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18031517	18031817	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18031818	18031872	1	-	0	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18031818	18031872	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18031873	18032015	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18032016	18032104	1	-	2	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18032016	18032104	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	intron	18032105	18032262	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	CDS	18032263	18032290	0.93	-	0	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	exon	18032263	18032290	.	-	.	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
Ledus.S3	AUGUSTUS	start_codon	18032288	18032290	.	-	0	transcript_id "Ledus.S3G229500.t2"; gene_id "Ledus.S3G229500"
# This transcript jg4984.t2 is derived from g2422.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4985.t1 is derived from g2423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20981014	20982015	.	+	.	Ledus.S1G240600
Ledus.S1	AUGUSTUS	transcript	20981014	20982015	.	+	.	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	start_codon	20981014	20981016	.	+	0	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	CDS	20981014	20981355	1	+	0	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	exon	20981014	20981355	.	+	.	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	intron	20981356	20981453	.	+	.	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	CDS	20981454	20981738	1	+	0	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	exon	20981454	20981738	.	+	.	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	intron	20981739	20981818	.	+	.	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	CDS	20981819	20981867	1	+	0	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	exon	20981819	20981867	.	+	.	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	intron	20981868	20981938	.	+	.	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	CDS	20981939	20982015	1	+	2	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	exon	20981939	20982015	.	+	.	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
Ledus.S1	AUGUSTUS	stop_codon	20982016	20982018	.	+	0	transcript_id "Ledus.S1G240600.t1"; gene_id "Ledus.S1G240600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7925.t1 is derived from g12596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7861348	7862166	.	-	.	Ledus.S5G070300
Ledus.S5	AUGUSTUS	transcript	7861348	7862166	.	-	.	transcript_id "Ledus.S5G070300.t1"; gene_id "Ledus.S5G070300"
Ledus.S5	AUGUSTUS	stop_codon	7861345	7861347	.	-	0	transcript_id "Ledus.S5G070300.t1"; gene_id "Ledus.S5G070300"
Ledus.S5	AUGUSTUS	CDS	7861348	7862166	0.91	-	0	transcript_id "Ledus.S5G070300.t1"; gene_id "Ledus.S5G070300"
Ledus.S5	AUGUSTUS	exon	7861348	7862166	.	-	.	transcript_id "Ledus.S5G070300.t1"; gene_id "Ledus.S5G070300"
Ledus.S5	AUGUSTUS	start_codon	7862164	7862166	.	-	0	transcript_id "Ledus.S5G070300.t1"; gene_id "Ledus.S5G070300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10502.t1 is derived from g11532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15644015	15645361	.	+	.	Ledus.S3G197900
Ledus.S3	AUGUSTUS	transcript	15644015	15645361	.	+	.	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	start_codon	15644015	15644017	.	+	0	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	CDS	15644015	15644249	0.94	+	0	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	exon	15644015	15644249	.	+	.	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	intron	15644250	15644335	.	+	.	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	CDS	15644336	15644574	0.99	+	2	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	exon	15644336	15644574	.	+	.	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	intron	15644575	15644693	.	+	.	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	CDS	15644694	15644806	0.98	+	0	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	exon	15644694	15644806	.	+	.	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	intron	15644807	15644890	.	+	.	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	CDS	15644891	15645037	1	+	1	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	exon	15644891	15645037	.	+	.	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	intron	15645038	15645105	.	+	.	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	CDS	15645106	15645361	1	+	1	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	exon	15645106	15645361	.	+	.	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
Ledus.S3	AUGUSTUS	stop_codon	15645362	15645364	.	+	0	transcript_id "Ledus.S3G197900.t1"; gene_id "Ledus.S3G197900"
# This transcript jg2245.t2 is derived from g9108.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2246.t1 is derived from g9109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16452640	16452990	.	-	.	Ledus.S2G212800
Ledus.S2	AUGUSTUS	transcript	16452640	16452990	.	-	.	transcript_id "Ledus.S2G212800.t1"; gene_id "Ledus.S2G212800"
Ledus.S2	AUGUSTUS	stop_codon	16452637	16452639	.	-	0	transcript_id "Ledus.S2G212800.t1"; gene_id "Ledus.S2G212800"
Ledus.S2	AUGUSTUS	CDS	16452640	16452990	0.77	-	0	transcript_id "Ledus.S2G212800.t1"; gene_id "Ledus.S2G212800"
Ledus.S2	AUGUSTUS	exon	16452640	16452990	.	-	.	transcript_id "Ledus.S2G212800.t1"; gene_id "Ledus.S2G212800"
Ledus.S2	AUGUSTUS	start_codon	16452988	16452990	.	-	0	transcript_id "Ledus.S2G212800.t1"; gene_id "Ledus.S2G212800"
# This transcript jg5019.t2 is derived from g2457.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5020.t1 is derived from g2458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21174847	21178068	.	+	.	Ledus.S1G244100
Ledus.S1	AUGUSTUS	transcript	21174847	21178068	.	+	.	transcript_id "Ledus.S1G244100.t1"; gene_id "Ledus.S1G244100"
Ledus.S1	AUGUSTUS	start_codon	21174847	21174849	.	+	0	transcript_id "Ledus.S1G244100.t1"; gene_id "Ledus.S1G244100"
Ledus.S1	AUGUSTUS	CDS	21174847	21178068	0.94	+	0	transcript_id "Ledus.S1G244100.t1"; gene_id "Ledus.S1G244100"
Ledus.S1	AUGUSTUS	exon	21174847	21178068	.	+	.	transcript_id "Ledus.S1G244100.t1"; gene_id "Ledus.S1G244100"
Ledus.S1	AUGUSTUS	stop_codon	21178069	21178071	.	+	0	transcript_id "Ledus.S1G244100.t1"; gene_id "Ledus.S1G244100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2963.t1 is derived from g398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4963810	4966369	.	+	.	Ledus.S1G038400
Ledus.S1	AUGUSTUS	transcript	4963810	4966369	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	start_codon	4963810	4963812	.	+	0	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	CDS	4963810	4963911	0.7	+	0	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	exon	4963810	4963911	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	intron	4963912	4964012	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	CDS	4964013	4964114	0.95	+	0	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	exon	4964013	4964114	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	intron	4964115	4964205	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	CDS	4964206	4964280	0.98	+	0	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	exon	4964206	4964280	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	intron	4964281	4964381	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	CDS	4964382	4964522	0.95	+	0	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	exon	4964382	4964522	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	intron	4964523	4964641	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	CDS	4964642	4964758	0.99	+	0	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	exon	4964642	4964758	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	intron	4964759	4964864	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	CDS	4964865	4964969	0.99	+	0	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	exon	4964865	4964969	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	intron	4964970	4965068	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	CDS	4965069	4965074	1	+	0	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	exon	4965069	4965074	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	intron	4965075	4965152	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	CDS	4965153	4965233	1	+	0	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	exon	4965153	4965233	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	intron	4965234	4965310	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	CDS	4965311	4965439	1	+	0	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	exon	4965311	4965439	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	intron	4965440	4965547	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	CDS	4965548	4966369	0.9	+	0	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	exon	4965548	4966369	.	+	.	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
Ledus.S1	AUGUSTUS	stop_codon	4966370	4966372	.	+	0	transcript_id "Ledus.S1G038400.t1"; gene_id "Ledus.S1G038400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12958.t1 is derived from g6768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1035029	1037800	.	-	.	Ledus.S6G002000
Ledus.S6	AUGUSTUS	transcript	1035029	1037800	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	stop_codon	1035026	1035028	.	-	0	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1035029	1035051	1	-	2	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1035029	1035051	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1035052	1035187	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1035188	1035228	1	-	1	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1035188	1035228	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1035229	1035303	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1035304	1035367	1	-	2	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1035304	1035367	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1035368	1035472	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1035473	1035593	1	-	0	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1035473	1035593	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1035594	1035682	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1035683	1035751	1	-	0	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1035683	1035751	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1035752	1035880	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1035881	1036004	1	-	1	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1035881	1036004	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1036005	1036191	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1036192	1036307	1	-	0	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1036192	1036307	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1036308	1036392	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1036393	1036524	1	-	0	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1036393	1036524	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1036525	1036681	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1036682	1036752	1	-	2	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1036682	1036752	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1036753	1036848	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1036849	1036933	0.89	-	0	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1036849	1036933	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1036934	1037040	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1037041	1037126	0.97	-	2	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1037041	1037126	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1037127	1037226	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1037227	1037291	1	-	1	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1037227	1037291	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1037292	1037432	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1037433	1037508	1	-	2	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1037433	1037508	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	intron	1037509	1037685	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	CDS	1037686	1037800	0.96	-	0	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	exon	1037686	1037800	.	-	.	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
Ledus.S6	AUGUSTUS	start_codon	1037798	1037800	.	-	0	transcript_id "Ledus.S6G002000.t1"; gene_id "Ledus.S6G002000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg912.t1 is derived from g7773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6148172	6154882	.	-	.	Ledus.S2G079400
Ledus.S2	AUGUSTUS	transcript	6148172	6154882	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	stop_codon	6148169	6148171	.	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6148172	6148548	0.96	-	2	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6148172	6148548	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6148549	6148728	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6148729	6149214	1	-	2	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6148729	6149214	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6149215	6149301	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6149302	6149542	1	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6149302	6149542	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6149543	6149635	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6149636	6149779	0.92	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6149636	6149779	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6149780	6149887	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6149888	6150487	0.87	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6149888	6150487	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6150488	6150610	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6150611	6150666	0.99	-	2	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6150611	6150666	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6150667	6150844	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6150845	6151200	0.97	-	1	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6150845	6151200	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6151201	6151317	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6151318	6151427	0.98	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6151318	6151427	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6151428	6151494	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6151495	6151619	1	-	2	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6151495	6151619	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6151620	6151711	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6151712	6151824	1	-	1	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6151712	6151824	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6151825	6151922	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6151923	6152053	1	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6151923	6152053	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6152054	6152125	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6152126	6152191	1	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6152126	6152191	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6152192	6152269	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6152270	6152353	1	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6152270	6152353	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6152354	6152455	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6152456	6152605	0.87	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6152456	6152605	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6152606	6152890	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6152891	6152991	1	-	2	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6152891	6152991	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6152992	6153144	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6153145	6153297	1	-	2	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6153145	6153297	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6153298	6153398	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6153399	6153487	1	-	1	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6153399	6153487	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6153488	6153608	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6153609	6153692	0.98	-	1	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6153609	6153692	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6153693	6153785	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6153786	6153820	0.98	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6153786	6153820	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6153821	6153907	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6153908	6154048	1	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6153908	6154048	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6154049	6154187	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6154188	6154313	0.6	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6154188	6154313	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6154314	6154389	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6154390	6154397	0.86	-	2	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6154390	6154397	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6154398	6154489	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6154490	6154597	0.92	-	2	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6154490	6154597	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6154598	6154752	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6154753	6154882	0.84	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6154753	6154882	.	-	.	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	start_codon	6154880	6154882	.	-	0	transcript_id "Ledus.S2G079400.t1"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	transcript	6148172	6154882	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	stop_codon	6148169	6148171	.	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6148172	6148548	0.91	-	2	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6148172	6148548	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6148549	6148683	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6148684	6149214	0.99	-	2	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6148684	6149214	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6149215	6149301	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6149302	6149542	1	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6149302	6149542	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6149543	6149635	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6149636	6149779	0.91	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6149636	6149779	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6149780	6149887	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6149888	6150487	0.86	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6149888	6150487	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6150488	6150610	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6150611	6150666	0.94	-	2	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6150611	6150666	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6150667	6150844	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6150845	6151200	0.96	-	1	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6150845	6151200	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6151201	6151317	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6151318	6151427	0.98	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6151318	6151427	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6151428	6151494	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6151495	6151619	1	-	2	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6151495	6151619	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6151620	6151711	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6151712	6151824	1	-	1	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6151712	6151824	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6151825	6151922	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6151923	6152053	1	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6151923	6152053	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6152054	6152125	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6152126	6152191	1	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6152126	6152191	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6152192	6152269	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6152270	6152353	1	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6152270	6152353	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6152354	6152455	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6152456	6152605	0.79	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6152456	6152605	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6152606	6152890	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6152891	6152991	1	-	2	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6152891	6152991	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6152992	6153144	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6153145	6153297	1	-	2	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6153145	6153297	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6153298	6153398	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6153399	6153487	0.99	-	1	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6153399	6153487	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6153488	6153608	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6153609	6153692	0.99	-	1	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6153609	6153692	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6153693	6153785	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6153786	6153820	1	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6153786	6153820	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6153821	6153907	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6153908	6154048	1	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6153908	6154048	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6154049	6154187	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6154188	6154313	0.61	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6154188	6154313	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6154314	6154389	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6154390	6154397	0.91	-	2	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6154390	6154397	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6154398	6154489	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6154490	6154597	0.93	-	2	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6154490	6154597	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	intron	6154598	6154752	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	CDS	6154753	6154882	0.85	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	exon	6154753	6154882	.	-	.	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
Ledus.S2	AUGUSTUS	start_codon	6154880	6154882	.	-	0	transcript_id "Ledus.S2G079400.t2"; gene_id "Ledus.S2G079400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1764.t1 is derived from g8626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12405392	12409729	.	-	.	Ledus.S2G164600
Ledus.S2	AUGUSTUS	transcript	12405392	12409729	.	-	.	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	stop_codon	12405389	12405391	.	-	0	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	CDS	12405392	12405661	0.87	-	0	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	exon	12405392	12405661	.	-	.	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	intron	12405662	12405769	.	-	.	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	CDS	12405770	12405991	0.96	-	0	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	exon	12405770	12405991	.	-	.	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	intron	12405992	12406120	.	-	.	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	CDS	12406121	12406438	1	-	0	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	exon	12406121	12406438	.	-	.	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	intron	12406439	12406609	.	-	.	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	CDS	12406610	12409139	1	-	1	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	exon	12406610	12409139	.	-	.	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	intron	12409140	12409286	.	-	.	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	CDS	12409287	12409729	0.88	-	0	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	exon	12409287	12409729	.	-	.	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
Ledus.S2	AUGUSTUS	start_codon	12409727	12409729	.	-	0	transcript_id "Ledus.S2G164600.t1"; gene_id "Ledus.S2G164600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9227.t1 is derived from g10257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5510864	5512212	.	-	.	Ledus.S3G070400
Ledus.S3	AUGUSTUS	transcript	5510864	5512212	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	stop_codon	5510861	5510863	.	-	0	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	CDS	5510864	5510936	1	-	1	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	exon	5510864	5510936	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	intron	5510937	5511064	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	CDS	5511065	5511150	1	-	0	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	exon	5511065	5511150	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	intron	5511151	5511240	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	CDS	5511241	5511311	1	-	2	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	exon	5511241	5511311	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	intron	5511312	5511401	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	CDS	5511402	5511477	1	-	0	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	exon	5511402	5511477	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	intron	5511478	5511587	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	CDS	5511588	5511689	1	-	0	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	exon	5511588	5511689	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	intron	5511690	5511836	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	CDS	5511837	5511935	1	-	0	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	exon	5511837	5511935	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	intron	5511936	5512140	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	CDS	5512141	5512212	0.73	-	0	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	exon	5512141	5512212	.	-	.	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
Ledus.S3	AUGUSTUS	start_codon	5512210	5512212	.	-	0	transcript_id "Ledus.S3G070400.t1"; gene_id "Ledus.S3G070400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10437.t1 is derived from g11467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15145400	15146047	.	-	.	Ledus.S3G191400
Ledus.S3	AUGUSTUS	transcript	15145400	15146047	.	-	.	transcript_id "Ledus.S3G191400.t1"; gene_id "Ledus.S3G191400"
Ledus.S3	AUGUSTUS	stop_codon	15145397	15145399	.	-	0	transcript_id "Ledus.S3G191400.t1"; gene_id "Ledus.S3G191400"
Ledus.S3	AUGUSTUS	CDS	15145400	15146047	0.99	-	0	transcript_id "Ledus.S3G191400.t1"; gene_id "Ledus.S3G191400"
Ledus.S3	AUGUSTUS	exon	15145400	15146047	.	-	.	transcript_id "Ledus.S3G191400.t1"; gene_id "Ledus.S3G191400"
Ledus.S3	AUGUSTUS	start_codon	15146045	15146047	.	-	0	transcript_id "Ledus.S3G191400.t1"; gene_id "Ledus.S3G191400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7208.t1 is derived from g6739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2156074	2162855	.	+	.	Ledus.C7G026900
Ledus.C7	AUGUSTUS	transcript	2156074	2162855	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	start_codon	2156074	2156076	.	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2156074	2156298	0.51	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2156074	2156298	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2156299	2156481	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2156482	2156565	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2156482	2156565	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2156566	2156693	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2156694	2156782	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2156694	2156782	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2156783	2156894	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2156895	2157069	1	+	1	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2156895	2157069	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2157070	2157160	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2157161	2157280	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2157161	2157280	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2157281	2157367	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2157368	2157451	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2157368	2157451	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2157452	2157540	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2157541	2157612	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2157541	2157612	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2157613	2157683	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2157684	2157757	0.64	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2157684	2157757	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2157758	2157859	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2157860	2158009	0.82	+	1	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2157860	2158009	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2158010	2158087	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2158088	2158181	1	+	1	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2158088	2158181	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2158182	2158285	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2158286	2158453	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2158286	2158453	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2158454	2158727	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2158728	2158880	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2158728	2158880	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2158881	2158960	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2158961	2159026	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2158961	2159026	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2159027	2159161	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2159162	2159218	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2159162	2159218	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2159219	2159374	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2159375	2159603	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2159375	2159603	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2159604	2159731	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2159732	2159862	1	+	2	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2159732	2159862	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2159863	2160125	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2160126	2160200	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2160126	2160200	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2160201	2160416	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2160417	2160482	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2160417	2160482	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2160483	2160674	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2160675	2160746	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2160675	2160746	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2160747	2160986	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2160987	2161034	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2160987	2161034	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2161035	2161175	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2161176	2161295	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2161176	2161295	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2161296	2161472	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2161473	2161538	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2161473	2161538	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2161539	2161643	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2161644	2161756	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2161644	2161756	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2161757	2161843	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2161844	2161934	1	+	1	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2161844	2161934	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2161935	2162009	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2162010	2162042	0.99	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2162010	2162042	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2162043	2162101	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2162102	2162122	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2162102	2162122	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2162123	2162200	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2162201	2162293	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2162201	2162293	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2162294	2162384	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2162385	2162432	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2162385	2162432	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2162433	2162512	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2162513	2162578	1	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2162513	2162578	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	intron	2162579	2162666	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	CDS	2162667	2162855	0.95	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	exon	2162667	2162855	.	+	.	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
Ledus.C7	AUGUSTUS	stop_codon	2162856	2162858	.	+	0	transcript_id "Ledus.C7G026900.t1"; gene_id "Ledus.C7G026900"
# This transcript jg11094.t2 is derived from g4712.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11095.t1 is derived from g4713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1741977	1744255	.	-	.	Ledus.S4G025100
Ledus.S4	AUGUSTUS	transcript	1741977	1744255	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	stop_codon	1741974	1741976	.	-	0	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1741977	1742126	0.82	-	0	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1741977	1742126	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1742127	1742236	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1742237	1742611	1	-	0	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1742237	1742611	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1742612	1742839	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1742840	1742985	1	-	2	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1742840	1742985	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1742986	1743295	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1743296	1743369	1	-	1	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1743296	1743369	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1743370	1743479	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1743480	1743651	1	-	2	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1743480	1743651	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1743652	1743785	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1743786	1743924	1	-	0	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1743786	1743924	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1743925	1744018	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1744019	1744255	0.55	-	0	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1744019	1744255	.	-	.	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	start_codon	1744253	1744255	.	-	0	transcript_id "Ledus.S4G025100.t1"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	transcript	1741977	1744255	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	stop_codon	1741974	1741976	.	-	0	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1741977	1742126	0.78	-	0	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1741977	1742126	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1742127	1742236	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1742237	1742611	0.99	-	0	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1742237	1742611	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1742612	1742839	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1742840	1742972	0.72	-	1	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1742840	1742972	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1742973	1743133	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1743134	1743194	0.59	-	2	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1743134	1743194	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1743195	1743295	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1743296	1743369	0.88	-	1	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1743296	1743369	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1743370	1743479	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1743480	1743651	1	-	2	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1743480	1743651	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1743652	1743785	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1743786	1743924	1	-	0	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1743786	1743924	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	intron	1743925	1744018	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	CDS	1744019	1744255	0.51	-	0	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	exon	1744019	1744255	.	-	.	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
Ledus.S4	AUGUSTUS	start_codon	1744253	1744255	.	-	0	transcript_id "Ledus.S4G025100.t2"; gene_id "Ledus.S4G025100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8261.t1 is derived from g12932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10273440	10276675	.	+	.	Ledus.S5G103900
Ledus.S5	AUGUSTUS	transcript	10273440	10276675	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	start_codon	10273440	10273442	.	+	0	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	CDS	10273440	10273784	0.42	+	0	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	exon	10273440	10273784	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	intron	10273785	10273872	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	CDS	10273873	10274281	1	+	0	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	exon	10273873	10274281	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	intron	10274282	10274377	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	CDS	10274378	10274572	1	+	2	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	exon	10274378	10274572	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	intron	10274573	10274661	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	CDS	10274662	10274884	1	+	2	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	exon	10274662	10274884	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	intron	10274885	10275038	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	CDS	10275039	10275165	1	+	1	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	exon	10275039	10275165	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	intron	10275166	10275315	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	CDS	10275316	10275411	1	+	0	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	exon	10275316	10275411	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	intron	10275412	10275494	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	CDS	10275495	10275572	1	+	0	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	exon	10275495	10275572	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	intron	10275573	10275761	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	CDS	10275762	10275822	1	+	0	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	exon	10275762	10275822	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	intron	10275823	10275924	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	CDS	10275925	10276112	1	+	2	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	exon	10275925	10276112	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	intron	10276113	10276303	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	CDS	10276304	10276390	0.99	+	0	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	exon	10276304	10276390	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	intron	10276391	10276474	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	CDS	10276475	10276511	0.92	+	0	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	exon	10276475	10276511	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	intron	10276512	10276655	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	CDS	10276656	10276675	1	+	2	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	exon	10276656	10276675	.	+	.	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
Ledus.S5	AUGUSTUS	stop_codon	10276676	10276678	.	+	0	transcript_id "Ledus.S5G103900.t1"; gene_id "Ledus.S5G103900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11972.t1 is derived from g5591.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8223108	8227429	.	+	.	Ledus.S4G112800
Ledus.S4	AUGUSTUS	transcript	8223108	8227429	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	start_codon	8223108	8223110	.	+	0	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	CDS	8223108	8223298	0.7	+	0	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	exon	8223108	8223298	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	intron	8223299	8223363	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	CDS	8223364	8223411	1	+	1	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	exon	8223364	8223411	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	intron	8223412	8223646	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	CDS	8223647	8223722	0.99	+	1	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	exon	8223647	8223722	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	intron	8223723	8224026	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	CDS	8224027	8224067	1	+	0	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	exon	8224027	8224067	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	intron	8224068	8224181	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	CDS	8224182	8224674	1	+	1	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	exon	8224182	8224674	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	intron	8224675	8224742	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	CDS	8224743	8224954	0.54	+	0	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	exon	8224743	8224954	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	intron	8224955	8225096	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	CDS	8225097	8225375	1	+	1	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	exon	8225097	8225375	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	intron	8225376	8225486	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	CDS	8225487	8225622	1	+	1	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	exon	8225487	8225622	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	intron	8225623	8225757	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	CDS	8225758	8225814	1	+	0	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	exon	8225758	8225814	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	intron	8225815	8226001	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	CDS	8226002	8227429	0.89	+	0	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	exon	8226002	8227429	.	+	.	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
Ledus.S4	AUGUSTUS	stop_codon	8227430	8227432	.	+	0	transcript_id "Ledus.S4G112800.t1"; gene_id "Ledus.S4G112800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9783.t1 is derived from g10813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9776470	9776667	.	+	.	Ledus.S3G126000
Ledus.S3	AUGUSTUS	transcript	9776470	9776667	.	+	.	transcript_id "Ledus.S3G126000.t1"; gene_id "Ledus.S3G126000"
Ledus.S3	AUGUSTUS	start_codon	9776470	9776472	.	+	0	transcript_id "Ledus.S3G126000.t1"; gene_id "Ledus.S3G126000"
Ledus.S3	AUGUSTUS	CDS	9776470	9776667	0.94	+	0	transcript_id "Ledus.S3G126000.t1"; gene_id "Ledus.S3G126000"
Ledus.S3	AUGUSTUS	exon	9776470	9776667	.	+	.	transcript_id "Ledus.S3G126000.t1"; gene_id "Ledus.S3G126000"
Ledus.S3	AUGUSTUS	stop_codon	9776668	9776670	.	+	0	transcript_id "Ledus.S3G126000.t1"; gene_id "Ledus.S3G126000"
# This transcript jg12927.t2 is derived from g4419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12928.t1 is derived from g4420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	368785	371655	.	-	.	Ledus.C9G003600
Ledus.C9	AUGUSTUS	transcript	368785	371655	.	-	.	transcript_id "Ledus.C9G003600.t1"; gene_id "Ledus.C9G003600"
Ledus.C9	AUGUSTUS	stop_codon	368782	368784	.	-	0	transcript_id "Ledus.C9G003600.t1"; gene_id "Ledus.C9G003600"
Ledus.C9	AUGUSTUS	CDS	368785	371655	0.99	-	0	transcript_id "Ledus.C9G003600.t1"; gene_id "Ledus.C9G003600"
Ledus.C9	AUGUSTUS	exon	368785	371655	.	-	.	transcript_id "Ledus.C9G003600.t1"; gene_id "Ledus.C9G003600"
Ledus.C9	AUGUSTUS	start_codon	371653	371655	.	-	0	transcript_id "Ledus.C9G003600.t1"; gene_id "Ledus.C9G003600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1745.t1 is derived from g8607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12301067	12303142	.	+	.	Ledus.S2G162700
Ledus.S2	AUGUSTUS	transcript	12301067	12303142	.	+	.	transcript_id "Ledus.S2G162700.t1"; gene_id "Ledus.S2G162700"
Ledus.S2	AUGUSTUS	start_codon	12301067	12301069	.	+	0	transcript_id "Ledus.S2G162700.t1"; gene_id "Ledus.S2G162700"
Ledus.S2	AUGUSTUS	CDS	12301067	12303142	0.88	+	0	transcript_id "Ledus.S2G162700.t1"; gene_id "Ledus.S2G162700"
Ledus.S2	AUGUSTUS	exon	12301067	12303142	.	+	.	transcript_id "Ledus.S2G162700.t1"; gene_id "Ledus.S2G162700"
Ledus.S2	AUGUSTUS	stop_codon	12303143	12303145	.	+	0	transcript_id "Ledus.S2G162700.t1"; gene_id "Ledus.S2G162700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5713.t1 is derived from g3152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26130879	26132405	.	+	.	Ledus.S1G313400
Ledus.S1	AUGUSTUS	transcript	26130879	26132405	.	+	.	transcript_id "Ledus.S1G313400.t1"; gene_id "Ledus.S1G313400"
Ledus.S1	AUGUSTUS	start_codon	26130879	26130881	.	+	0	transcript_id "Ledus.S1G313400.t1"; gene_id "Ledus.S1G313400"
Ledus.S1	AUGUSTUS	CDS	26130879	26132405	0.93	+	0	transcript_id "Ledus.S1G313400.t1"; gene_id "Ledus.S1G313400"
Ledus.S1	AUGUSTUS	exon	26130879	26132405	.	+	.	transcript_id "Ledus.S1G313400.t1"; gene_id "Ledus.S1G313400"
Ledus.S1	AUGUSTUS	stop_codon	26132406	26132408	.	+	0	transcript_id "Ledus.S1G313400.t1"; gene_id "Ledus.S1G313400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4869.t1 is derived from g2307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20445033	20446112	.	-	.	Ledus.S1G229000
Ledus.S1	AUGUSTUS	transcript	20445033	20446112	.	-	.	transcript_id "Ledus.S1G229000.t1"; gene_id "Ledus.S1G229000"
Ledus.S1	AUGUSTUS	stop_codon	20445030	20445032	.	-	0	transcript_id "Ledus.S1G229000.t1"; gene_id "Ledus.S1G229000"
Ledus.S1	AUGUSTUS	CDS	20445033	20446112	1	-	0	transcript_id "Ledus.S1G229000.t1"; gene_id "Ledus.S1G229000"
Ledus.S1	AUGUSTUS	exon	20445033	20446112	.	-	.	transcript_id "Ledus.S1G229000.t1"; gene_id "Ledus.S1G229000"
Ledus.S1	AUGUSTUS	start_codon	20446110	20446112	.	-	0	transcript_id "Ledus.S1G229000.t1"; gene_id "Ledus.S1G229000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg631.t1 is derived from g7492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3786579	3787733	.	+	.	Ledus.S2G051300
Ledus.S2	AUGUSTUS	transcript	3786579	3787733	.	+	.	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	start_codon	3786579	3786581	.	+	0	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	CDS	3786579	3786662	1	+	0	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	exon	3786579	3786662	.	+	.	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	intron	3786663	3786750	.	+	.	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	CDS	3786751	3786867	1	+	0	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	exon	3786751	3786867	.	+	.	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	intron	3786868	3787337	.	+	.	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	CDS	3787338	3787429	1	+	0	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	exon	3787338	3787429	.	+	.	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	intron	3787430	3787512	.	+	.	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	CDS	3787513	3787594	1	+	1	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	exon	3787513	3787594	.	+	.	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	intron	3787595	3787682	.	+	.	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	CDS	3787683	3787733	1	+	0	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	exon	3787683	3787733	.	+	.	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
Ledus.S2	AUGUSTUS	stop_codon	3787734	3787736	.	+	0	transcript_id "Ledus.S2G051300.t1"; gene_id "Ledus.S2G051300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1637.t1 is derived from g8498.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11506824	11507907	.	-	.	Ledus.S2G151900
Ledus.S2	AUGUSTUS	transcript	11506824	11507907	.	-	.	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	stop_codon	11506821	11506823	.	-	0	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	CDS	11506824	11506957	1	-	2	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	exon	11506824	11506957	.	-	.	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	intron	11506958	11507044	.	-	.	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	CDS	11507045	11507460	1	-	1	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	exon	11507045	11507460	.	-	.	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	intron	11507461	11507540	.	-	.	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	CDS	11507541	11507720	1	-	1	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	exon	11507541	11507720	.	-	.	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	intron	11507721	11507845	.	-	.	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	CDS	11507846	11507907	1	-	0	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	exon	11507846	11507907	.	-	.	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
Ledus.S2	AUGUSTUS	start_codon	11507905	11507907	.	-	0	transcript_id "Ledus.S2G151900.t1"; gene_id "Ledus.S2G151900"
# This transcript jg11417.t2 is derived from g5035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11418.t1 is derived from g5036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4143075	4146832	.	-	.	Ledus.S4G057400
Ledus.S4	AUGUSTUS	transcript	4143075	4146832	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	stop_codon	4143072	4143074	.	-	0	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	CDS	4143075	4143119	0.98	-	0	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	exon	4143075	4143119	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	intron	4143120	4143229	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	CDS	4143230	4143313	0.99	-	0	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	exon	4143230	4143313	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	intron	4143314	4143497	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	CDS	4143498	4143896	0.97	-	0	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	exon	4143498	4143896	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	intron	4143897	4144006	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	CDS	4144007	4144207	0.97	-	0	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	exon	4144007	4144207	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	intron	4144208	4144345	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	CDS	4144346	4144434	1	-	2	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	exon	4144346	4144434	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	intron	4144435	4144593	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	CDS	4144594	4144716	1	-	2	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	exon	4144594	4144716	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	intron	4144717	4144801	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	CDS	4144802	4145685	0.97	-	1	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	exon	4144802	4145685	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	intron	4145686	4145853	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	CDS	4145854	4145957	1	-	0	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	exon	4145854	4145957	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	intron	4145958	4146054	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	CDS	4146055	4146153	1	-	0	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	exon	4146055	4146153	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	intron	4146154	4146682	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	CDS	4146683	4146832	0.96	-	0	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	exon	4146683	4146832	.	-	.	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
Ledus.S4	AUGUSTUS	start_codon	4146830	4146832	.	-	0	transcript_id "Ledus.S4G057400.t1"; gene_id "Ledus.S4G057400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3509.t1 is derived from g944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8969052	8969891	.	-	.	Ledus.S1G093000
Ledus.S1	AUGUSTUS	transcript	8969052	8969891	.	-	.	transcript_id "Ledus.S1G093000.t1"; gene_id "Ledus.S1G093000"
Ledus.S1	AUGUSTUS	stop_codon	8969049	8969051	.	-	0	transcript_id "Ledus.S1G093000.t1"; gene_id "Ledus.S1G093000"
Ledus.S1	AUGUSTUS	CDS	8969052	8969891	0.76	-	0	transcript_id "Ledus.S1G093000.t1"; gene_id "Ledus.S1G093000"
Ledus.S1	AUGUSTUS	exon	8969052	8969891	.	-	.	transcript_id "Ledus.S1G093000.t1"; gene_id "Ledus.S1G093000"
Ledus.S1	AUGUSTUS	start_codon	8969889	8969891	.	-	0	transcript_id "Ledus.S1G093000.t1"; gene_id "Ledus.S1G093000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5372.t1 is derived from g2811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23851313	23853300	.	-	.	Ledus.S1G279300
Ledus.S1	AUGUSTUS	transcript	23851313	23853300	.	-	.	transcript_id "Ledus.S1G279300.t1"; gene_id "Ledus.S1G279300"
Ledus.S1	AUGUSTUS	stop_codon	23851310	23851312	.	-	0	transcript_id "Ledus.S1G279300.t1"; gene_id "Ledus.S1G279300"
Ledus.S1	AUGUSTUS	CDS	23851313	23851388	0.76	-	1	transcript_id "Ledus.S1G279300.t1"; gene_id "Ledus.S1G279300"
Ledus.S1	AUGUSTUS	exon	23851313	23851388	.	-	.	transcript_id "Ledus.S1G279300.t1"; gene_id "Ledus.S1G279300"
Ledus.S1	AUGUSTUS	intron	23851389	23852397	.	-	.	transcript_id "Ledus.S1G279300.t1"; gene_id "Ledus.S1G279300"
Ledus.S1	AUGUSTUS	CDS	23852398	23852934	1	-	1	transcript_id "Ledus.S1G279300.t1"; gene_id "Ledus.S1G279300"
Ledus.S1	AUGUSTUS	exon	23852398	23852934	.	-	.	transcript_id "Ledus.S1G279300.t1"; gene_id "Ledus.S1G279300"
Ledus.S1	AUGUSTUS	intron	23852935	23853028	.	-	.	transcript_id "Ledus.S1G279300.t1"; gene_id "Ledus.S1G279300"
Ledus.S1	AUGUSTUS	CDS	23853029	23853300	0.65	-	0	transcript_id "Ledus.S1G279300.t1"; gene_id "Ledus.S1G279300"
Ledus.S1	AUGUSTUS	exon	23853029	23853300	.	-	.	transcript_id "Ledus.S1G279300.t1"; gene_id "Ledus.S1G279300"
Ledus.S1	AUGUSTUS	start_codon	23853298	23853300	.	-	0	transcript_id "Ledus.S1G279300.t1"; gene_id "Ledus.S1G279300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6235.t1 is derived from g3678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29790116	29794612	.	-	.	Ledus.S1G365600
Ledus.S1	AUGUSTUS	transcript	29790116	29794612	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	stop_codon	29790113	29790115	.	-	0	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29790116	29790409	0.98	-	0	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29790116	29790409	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29790410	29790502	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29790503	29790656	1	-	1	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29790503	29790656	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29790657	29790796	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29790797	29790873	1	-	0	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29790797	29790873	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29790874	29790985	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29790986	29791178	1	-	1	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29790986	29791178	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29791179	29791307	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29791308	29791493	1	-	1	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29791308	29791493	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29791494	29791637	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29791638	29792044	1	-	0	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29791638	29792044	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29792045	29792261	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29792262	29792531	0.92	-	0	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29792262	29792531	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29792532	29792953	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29792954	29793280	0.99	-	0	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29792954	29793280	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29793281	29793419	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29793420	29793482	0.78	-	0	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29793420	29793482	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29793483	29793618	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29793619	29793693	0.43	-	0	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29793619	29793693	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29793694	29793910	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29793911	29793921	0.39	-	2	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29793911	29793921	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29793922	29794015	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29794016	29794102	0.48	-	2	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29794016	29794102	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29794103	29794374	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29794375	29794612	0.31	-	0	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29794375	29794612	.	-	.	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	start_codon	29794610	29794612	.	-	0	transcript_id "Ledus.S1G365600.t1"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	transcript	29790116	29794612	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	stop_codon	29790113	29790115	.	-	0	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29790116	29790409	0.97	-	0	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29790116	29790409	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29790410	29790502	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29790503	29790656	1	-	1	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29790503	29790656	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29790657	29790796	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29790797	29790873	1	-	0	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29790797	29790873	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29790874	29790985	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29790986	29791178	0.98	-	1	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29790986	29791178	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29791179	29791307	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29791308	29791493	1	-	1	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29791308	29791493	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29791494	29791637	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29791638	29792044	1	-	0	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29791638	29792044	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29792045	29792261	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29792262	29792286	0.77	-	1	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29792262	29792286	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29792287	29792515	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29792516	29792531	0.99	-	2	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29792516	29792531	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29792532	29792745	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29792746	29792803	0.96	-	0	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29792746	29792803	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29792804	29792953	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29792954	29793280	0.95	-	0	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29792954	29793280	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29793281	29793419	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29793420	29793482	0.75	-	0	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29793420	29793482	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29793483	29793618	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29793619	29793693	0.36	-	0	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29793619	29793693	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29793694	29793910	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29793911	29793921	0.37	-	2	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29793911	29793921	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29793922	29794015	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29794016	29794102	0.39	-	2	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29794016	29794102	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	intron	29794103	29794374	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	CDS	29794375	29794612	0.25	-	0	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	exon	29794375	29794612	.	-	.	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
Ledus.S1	AUGUSTUS	start_codon	29794610	29794612	.	-	0	transcript_id "Ledus.S1G365600.t2"; gene_id "Ledus.S1G365600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7144.t1 is derived from g6675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1752514	1753828	.	-	.	Ledus.C7G020500
Ledus.C7	AUGUSTUS	transcript	1752514	1753828	.	-	.	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	stop_codon	1752511	1752513	.	-	0	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	CDS	1752514	1752599	0.63	-	2	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	exon	1752514	1752599	.	-	.	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	intron	1752600	1752895	.	-	.	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	CDS	1752896	1753007	0.59	-	0	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	exon	1752896	1753007	.	-	.	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	intron	1753008	1753117	.	-	.	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	CDS	1753118	1753176	0.94	-	2	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	exon	1753118	1753176	.	-	.	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	intron	1753177	1753384	.	-	.	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	CDS	1753385	1753502	1	-	0	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	exon	1753385	1753502	.	-	.	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	intron	1753503	1753580	.	-	.	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	CDS	1753581	1753673	1	-	0	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	exon	1753581	1753673	.	-	.	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	intron	1753674	1753756	.	-	.	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	CDS	1753757	1753828	0.84	-	0	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	exon	1753757	1753828	.	-	.	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
Ledus.C7	AUGUSTUS	start_codon	1753826	1753828	.	-	0	transcript_id "Ledus.C7G020500.t1"; gene_id "Ledus.C7G020500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9500.t1 is derived from g10530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7452666	7454530	.	-	.	Ledus.S3G097700
Ledus.S3	AUGUSTUS	transcript	7452666	7454530	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	stop_codon	7452663	7452665	.	-	0	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	CDS	7452666	7452693	0.8	-	1	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	exon	7452666	7452693	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	intron	7452694	7452856	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	CDS	7452857	7452924	1	-	0	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	exon	7452857	7452924	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	intron	7452925	7453014	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	CDS	7453015	7453358	1	-	2	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	exon	7453015	7453358	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	intron	7453359	7453441	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	CDS	7453442	7453517	0.99	-	0	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	exon	7453442	7453517	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	intron	7453518	7453638	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	CDS	7453639	7453705	1	-	1	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	exon	7453639	7453705	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	intron	7453706	7453825	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	CDS	7453826	7453931	0.99	-	2	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	exon	7453826	7453931	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	intron	7453932	7454041	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	CDS	7454042	7454111	0.99	-	0	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	exon	7454042	7454111	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	intron	7454112	7454218	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	CDS	7454219	7454268	0.91	-	2	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	exon	7454219	7454268	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	intron	7454269	7454358	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	CDS	7454359	7454530	0.99	-	0	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	exon	7454359	7454530	.	-	.	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
Ledus.S3	AUGUSTUS	start_codon	7454528	7454530	.	-	0	transcript_id "Ledus.S3G097700.t1"; gene_id "Ledus.S3G097700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5668.t1 is derived from g3107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25724915	25725112	.	-	.	Ledus.S1G308900
Ledus.S1	AUGUSTUS	transcript	25724915	25725112	.	-	.	transcript_id "Ledus.S1G308900.t1"; gene_id "Ledus.S1G308900"
Ledus.S1	AUGUSTUS	stop_codon	25724912	25724914	.	-	0	transcript_id "Ledus.S1G308900.t1"; gene_id "Ledus.S1G308900"
Ledus.S1	AUGUSTUS	CDS	25724915	25725112	0.77	-	0	transcript_id "Ledus.S1G308900.t1"; gene_id "Ledus.S1G308900"
Ledus.S1	AUGUSTUS	exon	25724915	25725112	.	-	.	transcript_id "Ledus.S1G308900.t1"; gene_id "Ledus.S1G308900"
Ledus.S1	AUGUSTUS	start_codon	25725110	25725112	.	-	0	transcript_id "Ledus.S1G308900.t1"; gene_id "Ledus.S1G308900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12509.t1 is derived from g6130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12565287	12567684	.	-	.	Ledus.S4G166500
Ledus.S4	AUGUSTUS	transcript	12565287	12567684	.	-	.	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	stop_codon	12565284	12565286	.	-	0	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	CDS	12565287	12565321	1	-	2	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	exon	12565287	12565321	.	-	.	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	intron	12565322	12565458	.	-	.	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	CDS	12565459	12565522	0.89	-	0	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	exon	12565459	12565522	.	-	.	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	intron	12565523	12566216	.	-	.	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	CDS	12566217	12566420	0.33	-	0	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	exon	12566217	12566420	.	-	.	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	intron	12566421	12566511	.	-	.	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	CDS	12566512	12567684	1	-	0	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	exon	12566512	12567684	.	-	.	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
Ledus.S4	AUGUSTUS	start_codon	12567682	12567684	.	-	0	transcript_id "Ledus.S4G166500.t1"; gene_id "Ledus.S4G166500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2291.t1 is derived from g9154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17049237	17050116	.	-	.	Ledus.S2G217300
Ledus.S2	AUGUSTUS	transcript	17049237	17050116	.	-	.	transcript_id "Ledus.S2G217300.t1"; gene_id "Ledus.S2G217300"
Ledus.S2	AUGUSTUS	stop_codon	17049234	17049236	.	-	0	transcript_id "Ledus.S2G217300.t1"; gene_id "Ledus.S2G217300"
Ledus.S2	AUGUSTUS	CDS	17049237	17049306	0.12	-	1	transcript_id "Ledus.S2G217300.t1"; gene_id "Ledus.S2G217300"
Ledus.S2	AUGUSTUS	exon	17049237	17049306	.	-	.	transcript_id "Ledus.S2G217300.t1"; gene_id "Ledus.S2G217300"
Ledus.S2	AUGUSTUS	intron	17049307	17049446	.	-	.	transcript_id "Ledus.S2G217300.t1"; gene_id "Ledus.S2G217300"
Ledus.S2	AUGUSTUS	CDS	17049447	17049585	0.12	-	2	transcript_id "Ledus.S2G217300.t1"; gene_id "Ledus.S2G217300"
Ledus.S2	AUGUSTUS	exon	17049447	17049585	.	-	.	transcript_id "Ledus.S2G217300.t1"; gene_id "Ledus.S2G217300"
Ledus.S2	AUGUSTUS	intron	17049586	17049896	.	-	.	transcript_id "Ledus.S2G217300.t1"; gene_id "Ledus.S2G217300"
Ledus.S2	AUGUSTUS	CDS	17049897	17050116	0.65	-	0	transcript_id "Ledus.S2G217300.t1"; gene_id "Ledus.S2G217300"
Ledus.S2	AUGUSTUS	exon	17049897	17050116	.	-	.	transcript_id "Ledus.S2G217300.t1"; gene_id "Ledus.S2G217300"
Ledus.S2	AUGUSTUS	start_codon	17050114	17050116	.	-	0	transcript_id "Ledus.S2G217300.t1"; gene_id "Ledus.S2G217300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9704.t1 is derived from g10734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9177597	9178294	.	-	.	Ledus.S3G118100
Ledus.S3	AUGUSTUS	transcript	9177597	9178294	.	-	.	transcript_id "Ledus.S3G118100.t1"; gene_id "Ledus.S3G118100"
Ledus.S3	AUGUSTUS	stop_codon	9177594	9177596	.	-	0	transcript_id "Ledus.S3G118100.t1"; gene_id "Ledus.S3G118100"
Ledus.S3	AUGUSTUS	CDS	9177597	9177776	0.13	-	0	transcript_id "Ledus.S3G118100.t1"; gene_id "Ledus.S3G118100"
Ledus.S3	AUGUSTUS	exon	9177597	9177776	.	-	.	transcript_id "Ledus.S3G118100.t1"; gene_id "Ledus.S3G118100"
Ledus.S3	AUGUSTUS	intron	9177777	9178102	.	-	.	transcript_id "Ledus.S3G118100.t1"; gene_id "Ledus.S3G118100"
Ledus.S3	AUGUSTUS	CDS	9178103	9178294	0.78	-	0	transcript_id "Ledus.S3G118100.t1"; gene_id "Ledus.S3G118100"
Ledus.S3	AUGUSTUS	exon	9178103	9178294	.	-	.	transcript_id "Ledus.S3G118100.t1"; gene_id "Ledus.S3G118100"
Ledus.S3	AUGUSTUS	start_codon	9178292	9178294	.	-	0	transcript_id "Ledus.S3G118100.t1"; gene_id "Ledus.S3G118100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10481.t1 is derived from g11511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15528537	15531501	.	-	.	Ledus.S3G195800
Ledus.S3	AUGUSTUS	transcript	15528537	15531501	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	stop_codon	15528534	15528536	.	-	0	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	CDS	15528537	15528663	0.89	-	1	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	exon	15528537	15528663	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	intron	15528664	15528791	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	CDS	15528792	15528889	1	-	0	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	exon	15528792	15528889	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	intron	15528890	15529007	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	CDS	15529008	15529091	0.93	-	0	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	exon	15529008	15529091	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	intron	15529092	15529181	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	CDS	15529182	15529301	1	-	0	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	exon	15529182	15529301	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	intron	15529302	15529487	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	CDS	15529488	15529634	1	-	0	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	exon	15529488	15529634	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	intron	15529635	15529851	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	CDS	15529852	15529953	1	-	0	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	exon	15529852	15529953	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	intron	15529954	15530090	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	CDS	15530091	15530381	0.73	-	0	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	exon	15530091	15530381	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	intron	15530382	15530506	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	CDS	15530507	15531066	0.47	-	2	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	exon	15530507	15531066	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	intron	15531067	15531148	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	CDS	15531149	15531160	0.4	-	2	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	exon	15531149	15531160	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	intron	15531161	15531279	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	CDS	15531280	15531334	0.33	-	0	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	exon	15531280	15531334	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	intron	15531335	15531498	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	CDS	15531499	15531501	0.51	-	0	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	exon	15531499	15531501	.	-	.	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
Ledus.S3	AUGUSTUS	start_codon	15531499	15531501	.	-	0	transcript_id "Ledus.S3G195800.t1"; gene_id "Ledus.S3G195800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12071.t1 is derived from g5690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9317337	9319185	.	-	.	Ledus.S4G122700
Ledus.S4	AUGUSTUS	transcript	9317337	9319185	.	-	.	transcript_id "Ledus.S4G122700.t1"; gene_id "Ledus.S4G122700"
Ledus.S4	AUGUSTUS	stop_codon	9317334	9317336	.	-	0	transcript_id "Ledus.S4G122700.t1"; gene_id "Ledus.S4G122700"
Ledus.S4	AUGUSTUS	CDS	9317337	9317410	1	-	2	transcript_id "Ledus.S4G122700.t1"; gene_id "Ledus.S4G122700"
Ledus.S4	AUGUSTUS	exon	9317337	9317410	.	-	.	transcript_id "Ledus.S4G122700.t1"; gene_id "Ledus.S4G122700"
Ledus.S4	AUGUSTUS	intron	9317411	9317498	.	-	.	transcript_id "Ledus.S4G122700.t1"; gene_id "Ledus.S4G122700"
Ledus.S4	AUGUSTUS	CDS	9317499	9319185	0.96	-	0	transcript_id "Ledus.S4G122700.t1"; gene_id "Ledus.S4G122700"
Ledus.S4	AUGUSTUS	exon	9317499	9319185	.	-	.	transcript_id "Ledus.S4G122700.t1"; gene_id "Ledus.S4G122700"
Ledus.S4	AUGUSTUS	start_codon	9319183	9319185	.	-	0	transcript_id "Ledus.S4G122700.t1"; gene_id "Ledus.S4G122700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10719.t1 is derived from g11749.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17353678	17355411	.	+	.	Ledus.S3G219600
Ledus.S3	AUGUSTUS	transcript	17353678	17355411	.	+	.	transcript_id "Ledus.S3G219600.t1"; gene_id "Ledus.S3G219600"
Ledus.S3	AUGUSTUS	start_codon	17353678	17353680	.	+	0	transcript_id "Ledus.S3G219600.t1"; gene_id "Ledus.S3G219600"
Ledus.S3	AUGUSTUS	CDS	17353678	17354507	0.97	+	0	transcript_id "Ledus.S3G219600.t1"; gene_id "Ledus.S3G219600"
Ledus.S3	AUGUSTUS	exon	17353678	17354507	.	+	.	transcript_id "Ledus.S3G219600.t1"; gene_id "Ledus.S3G219600"
Ledus.S3	AUGUSTUS	intron	17354508	17354936	.	+	.	transcript_id "Ledus.S3G219600.t1"; gene_id "Ledus.S3G219600"
Ledus.S3	AUGUSTUS	CDS	17354937	17355411	1	+	1	transcript_id "Ledus.S3G219600.t1"; gene_id "Ledus.S3G219600"
Ledus.S3	AUGUSTUS	exon	17354937	17355411	.	+	.	transcript_id "Ledus.S3G219600.t1"; gene_id "Ledus.S3G219600"
Ledus.S3	AUGUSTUS	stop_codon	17355412	17355414	.	+	0	transcript_id "Ledus.S3G219600.t1"; gene_id "Ledus.S3G219600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11703.t1 is derived from g5322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6102745	6104350	.	+	.	Ledus.S4G085900
Ledus.S4	AUGUSTUS	transcript	6102745	6104350	.	+	.	transcript_id "Ledus.S4G085900.t1"; gene_id "Ledus.S4G085900"
Ledus.S4	AUGUSTUS	start_codon	6102745	6102747	.	+	0	transcript_id "Ledus.S4G085900.t1"; gene_id "Ledus.S4G085900"
Ledus.S4	AUGUSTUS	CDS	6102745	6102807	0.01	+	0	transcript_id "Ledus.S4G085900.t1"; gene_id "Ledus.S4G085900"
Ledus.S4	AUGUSTUS	exon	6102745	6102807	.	+	.	transcript_id "Ledus.S4G085900.t1"; gene_id "Ledus.S4G085900"
Ledus.S4	AUGUSTUS	intron	6102808	6104305	.	+	.	transcript_id "Ledus.S4G085900.t1"; gene_id "Ledus.S4G085900"
Ledus.S4	AUGUSTUS	CDS	6104306	6104350	0.16	+	0	transcript_id "Ledus.S4G085900.t1"; gene_id "Ledus.S4G085900"
Ledus.S4	AUGUSTUS	exon	6104306	6104350	.	+	.	transcript_id "Ledus.S4G085900.t1"; gene_id "Ledus.S4G085900"
Ledus.S4	AUGUSTUS	stop_codon	6104351	6104353	.	+	0	transcript_id "Ledus.S4G085900.t1"; gene_id "Ledus.S4G085900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10380.t1 is derived from g11410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14603061	14605353	.	-	.	Ledus.S3G185700
Ledus.S3	AUGUSTUS	transcript	14603061	14605353	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	stop_codon	14603058	14603060	.	-	0	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	CDS	14603061	14603188	1	-	2	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	exon	14603061	14603188	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	intron	14603189	14603272	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	CDS	14603273	14603636	1	-	0	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	exon	14603273	14603636	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	intron	14603637	14603723	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	CDS	14603724	14604322	1	-	2	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	exon	14603724	14604322	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	intron	14604323	14604407	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	CDS	14604408	14604536	1	-	2	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	exon	14604408	14604536	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	intron	14604537	14604615	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	CDS	14604616	14604860	1	-	1	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	exon	14604616	14604860	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	intron	14604861	14604936	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	CDS	14604937	14605088	1	-	0	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	exon	14604937	14605088	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	intron	14605089	14605152	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	CDS	14605153	14605353	0.7	-	0	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	exon	14605153	14605353	.	-	.	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
Ledus.S3	AUGUSTUS	start_codon	14605351	14605353	.	-	0	transcript_id "Ledus.S3G185700.t1"; gene_id "Ledus.S3G185700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10993.t1 is derived from g4611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1037993	1039693	.	+	.	Ledus.S4G014900
Ledus.S4	AUGUSTUS	transcript	1037993	1039693	.	+	.	transcript_id "Ledus.S4G014900.t1"; gene_id "Ledus.S4G014900"
Ledus.S4	AUGUSTUS	start_codon	1037993	1037995	.	+	0	transcript_id "Ledus.S4G014900.t1"; gene_id "Ledus.S4G014900"
Ledus.S4	AUGUSTUS	CDS	1037993	1039693	0.93	+	0	transcript_id "Ledus.S4G014900.t1"; gene_id "Ledus.S4G014900"
Ledus.S4	AUGUSTUS	exon	1037993	1039693	.	+	.	transcript_id "Ledus.S4G014900.t1"; gene_id "Ledus.S4G014900"
Ledus.S4	AUGUSTUS	stop_codon	1039694	1039696	.	+	0	transcript_id "Ledus.S4G014900.t1"; gene_id "Ledus.S4G014900"
Ledus.S4	AUGUSTUS	transcript	1038764	1039693	.	+	.	transcript_id "Ledus.S4G014900.t2"; gene_id "Ledus.S4G014900"
Ledus.S4	AUGUSTUS	start_codon	1038764	1038766	.	+	0	transcript_id "Ledus.S4G014900.t2"; gene_id "Ledus.S4G014900"
Ledus.S4	AUGUSTUS	CDS	1038764	1039693	0.86	+	0	transcript_id "Ledus.S4G014900.t2"; gene_id "Ledus.S4G014900"
Ledus.S4	AUGUSTUS	exon	1038764	1039693	.	+	.	transcript_id "Ledus.S4G014900.t2"; gene_id "Ledus.S4G014900"
Ledus.S4	AUGUSTUS	stop_codon	1039694	1039696	.	+	0	transcript_id "Ledus.S4G014900.t2"; gene_id "Ledus.S4G014900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4041.t1 is derived from g1477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14285054	14286828	.	-	.	Ledus.S1G146200
Ledus.S1	AUGUSTUS	transcript	14285054	14286828	.	-	.	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	stop_codon	14285051	14285053	.	-	0	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	CDS	14285054	14285211	0.47	-	2	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	exon	14285054	14285211	.	-	.	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	intron	14285212	14285334	.	-	.	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	CDS	14285335	14285405	0.93	-	1	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	exon	14285335	14285405	.	-	.	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	intron	14285406	14285497	.	-	.	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	CDS	14285498	14285664	1	-	0	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	exon	14285498	14285664	.	-	.	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	intron	14285665	14285828	.	-	.	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	CDS	14285829	14286228	1	-	1	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	exon	14285829	14286228	.	-	.	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	intron	14286229	14286559	.	-	.	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	CDS	14286560	14286828	0.56	-	0	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	exon	14286560	14286828	.	-	.	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
Ledus.S1	AUGUSTUS	start_codon	14286826	14286828	.	-	0	transcript_id "Ledus.S1G146200.t1"; gene_id "Ledus.S1G146200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3667.t1 is derived from g1103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10565657	10567768	.	+	.	Ledus.S1G108800
Ledus.S1	AUGUSTUS	transcript	10565657	10567768	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	start_codon	10565657	10565659	.	+	0	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	CDS	10565657	10565869	0.87	+	0	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	exon	10565657	10565869	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	intron	10565870	10565978	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	CDS	10565979	10566272	1	+	0	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	exon	10565979	10566272	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	intron	10566273	10566439	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	CDS	10566440	10566652	1	+	0	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	exon	10566440	10566652	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	intron	10566653	10566726	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	CDS	10566727	10566804	1	+	0	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	exon	10566727	10566804	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	intron	10566805	10566893	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	CDS	10566894	10567295	1	+	0	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	exon	10566894	10567295	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	intron	10567296	10567362	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	CDS	10567363	10567474	1	+	0	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	exon	10567363	10567474	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	intron	10567475	10567549	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	CDS	10567550	10567635	1	+	2	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	exon	10567550	10567635	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	intron	10567636	10567711	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	CDS	10567712	10567768	1	+	0	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	exon	10567712	10567768	.	+	.	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
Ledus.S1	AUGUSTUS	stop_codon	10567769	10567771	.	+	0	transcript_id "Ledus.S1G108800.t1"; gene_id "Ledus.S1G108800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5013.t1 is derived from g2451.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21129308	21134171	.	+	.	Ledus.S1G243400
Ledus.S1	AUGUSTUS	transcript	21129308	21134171	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	start_codon	21129308	21129310	.	+	0	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21129308	21129515	0.25	+	0	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21129308	21129515	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21129516	21129703	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21129704	21129760	0.42	+	2	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21129704	21129760	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21129761	21129980	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21129981	21130010	0.71	+	2	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21129981	21130010	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21130011	21130294	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21130295	21130414	0.38	+	2	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21130295	21130414	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21130415	21130492	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21130493	21130685	0.9	+	2	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21130493	21130685	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21130686	21130820	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21130821	21130902	1	+	1	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21130821	21130902	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21130903	21131002	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21131003	21131143	0.96	+	0	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21131003	21131143	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21131144	21131282	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21131283	21131458	1	+	0	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21131283	21131458	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21131459	21131597	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21131598	21131749	1	+	1	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21131598	21131749	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21131750	21132072	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21132073	21133612	0.98	+	2	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21132073	21133612	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21133613	21134095	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21134096	21134171	0.41	+	1	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21134096	21134171	.	+	.	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	stop_codon	21134172	21134174	.	+	0	transcript_id "Ledus.S1G243400.t1"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	transcript	21129308	21134171	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	start_codon	21129308	21129310	.	+	0	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21129308	21129515	0.21	+	0	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21129308	21129515	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21129516	21129703	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21129704	21129760	0.19	+	2	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21129704	21129760	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21129761	21129980	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21129981	21130010	0.15	+	2	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21129981	21130010	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21130011	21130187	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21130188	21130194	0.15	+	2	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21130188	21130194	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21130195	21130294	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21130295	21130389	0.16	+	1	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21130295	21130389	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21130390	21130492	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21130493	21130685	1	+	2	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21130493	21130685	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21130686	21130820	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21130821	21130902	1	+	1	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21130821	21130902	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21130903	21131002	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21131003	21131143	0.97	+	0	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21131003	21131143	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21131144	21131282	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21131283	21131458	1	+	0	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21131283	21131458	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21131459	21131597	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21131598	21131749	1	+	1	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21131598	21131749	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21131750	21132072	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21132073	21133612	0.98	+	2	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21132073	21133612	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	intron	21133613	21134095	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	CDS	21134096	21134171	0.44	+	1	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	exon	21134096	21134171	.	+	.	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
Ledus.S1	AUGUSTUS	stop_codon	21134172	21134174	.	+	0	transcript_id "Ledus.S1G243400.t2"; gene_id "Ledus.S1G243400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3902.t1 is derived from g1338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13492081	13495998	.	+	.	Ledus.S1G132300
Ledus.S1	AUGUSTUS	transcript	13492081	13495998	.	+	.	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	start_codon	13492081	13492083	.	+	0	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	CDS	13492081	13492288	0.99	+	0	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	exon	13492081	13492288	.	+	.	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	intron	13492289	13492415	.	+	.	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	CDS	13492416	13493195	0.94	+	2	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	exon	13492416	13493195	.	+	.	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	intron	13493196	13493322	.	+	.	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	CDS	13493323	13493893	0.98	+	2	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	exon	13493323	13493893	.	+	.	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	intron	13493894	13494005	.	+	.	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	CDS	13494006	13495998	0.34	+	1	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	exon	13494006	13495998	.	+	.	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
Ledus.S1	AUGUSTUS	stop_codon	13495999	13496001	.	+	0	transcript_id "Ledus.S1G132300.t1"; gene_id "Ledus.S1G132300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6437.t1 is derived from g3880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31243264	31245258	.	-	.	Ledus.S1G385800
Ledus.S1	AUGUSTUS	transcript	31243264	31245258	.	-	.	transcript_id "Ledus.S1G385800.t1"; gene_id "Ledus.S1G385800"
Ledus.S1	AUGUSTUS	stop_codon	31243261	31243263	.	-	0	transcript_id "Ledus.S1G385800.t1"; gene_id "Ledus.S1G385800"
Ledus.S1	AUGUSTUS	CDS	31243264	31245258	1	-	0	transcript_id "Ledus.S1G385800.t1"; gene_id "Ledus.S1G385800"
Ledus.S1	AUGUSTUS	exon	31243264	31245258	.	-	.	transcript_id "Ledus.S1G385800.t1"; gene_id "Ledus.S1G385800"
Ledus.S1	AUGUSTUS	start_codon	31245256	31245258	.	-	0	transcript_id "Ledus.S1G385800.t1"; gene_id "Ledus.S1G385800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg837.t1 is derived from g7698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5534259	5534817	.	+	.	Ledus.S2G071900
Ledus.S2	AUGUSTUS	transcript	5534259	5534817	.	+	.	transcript_id "Ledus.S2G071900.t1"; gene_id "Ledus.S2G071900"
Ledus.S2	AUGUSTUS	start_codon	5534259	5534261	.	+	0	transcript_id "Ledus.S2G071900.t1"; gene_id "Ledus.S2G071900"
Ledus.S2	AUGUSTUS	CDS	5534259	5534353	0.46	+	0	transcript_id "Ledus.S2G071900.t1"; gene_id "Ledus.S2G071900"
Ledus.S2	AUGUSTUS	exon	5534259	5534353	.	+	.	transcript_id "Ledus.S2G071900.t1"; gene_id "Ledus.S2G071900"
Ledus.S2	AUGUSTUS	intron	5534354	5534480	.	+	.	transcript_id "Ledus.S2G071900.t1"; gene_id "Ledus.S2G071900"
Ledus.S2	AUGUSTUS	CDS	5534481	5534817	0.49	+	1	transcript_id "Ledus.S2G071900.t1"; gene_id "Ledus.S2G071900"
Ledus.S2	AUGUSTUS	exon	5534481	5534817	.	+	.	transcript_id "Ledus.S2G071900.t1"; gene_id "Ledus.S2G071900"
Ledus.S2	AUGUSTUS	stop_codon	5534818	5534820	.	+	0	transcript_id "Ledus.S2G071900.t1"; gene_id "Ledus.S2G071900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6602.t1 is derived from g4045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32617316	32619231	.	+	.	Ledus.S1G402300
Ledus.S1	AUGUSTUS	transcript	32617316	32619231	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	start_codon	32617316	32617318	.	+	0	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	CDS	32617316	32617369	0.97	+	0	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	exon	32617316	32617369	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	intron	32617370	32617574	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	CDS	32617575	32617697	1	+	0	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	exon	32617575	32617697	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	intron	32617698	32617866	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	CDS	32617867	32618052	1	+	0	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	exon	32617867	32618052	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	intron	32618053	32618147	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	CDS	32618148	32618226	0.96	+	0	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	exon	32618148	32618226	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	intron	32618227	32618330	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	CDS	32618331	32618482	0.96	+	2	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	exon	32618331	32618482	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	intron	32618483	32618566	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	CDS	32618567	32618680	1	+	0	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	exon	32618567	32618680	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	intron	32618681	32618769	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	CDS	32618770	32618901	1	+	0	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	exon	32618770	32618901	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	intron	32618902	32618985	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	CDS	32618986	32619099	0.98	+	0	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	exon	32618986	32619099	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	intron	32619100	32619204	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	CDS	32619205	32619231	0.98	+	0	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	exon	32619205	32619231	.	+	.	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
Ledus.S1	AUGUSTUS	stop_codon	32619232	32619234	.	+	0	transcript_id "Ledus.S1G402300.t1"; gene_id "Ledus.S1G402300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8666.t1 is derived from g9696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1277774	1278973	.	-	.	Ledus.S3G014300
Ledus.S3	AUGUSTUS	transcript	1277774	1278973	.	-	.	transcript_id "Ledus.S3G014300.t1"; gene_id "Ledus.S3G014300"
Ledus.S3	AUGUSTUS	stop_codon	1277771	1277773	.	-	0	transcript_id "Ledus.S3G014300.t1"; gene_id "Ledus.S3G014300"
Ledus.S3	AUGUSTUS	CDS	1277774	1278973	1	-	0	transcript_id "Ledus.S3G014300.t1"; gene_id "Ledus.S3G014300"
Ledus.S3	AUGUSTUS	exon	1277774	1278973	.	-	.	transcript_id "Ledus.S3G014300.t1"; gene_id "Ledus.S3G014300"
Ledus.S3	AUGUSTUS	start_codon	1278971	1278973	.	-	0	transcript_id "Ledus.S3G014300.t1"; gene_id "Ledus.S3G014300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5641.t1 is derived from g3080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25549685	25550533	.	+	.	Ledus.S1G306200
Ledus.S1	AUGUSTUS	transcript	25549685	25550533	.	+	.	transcript_id "Ledus.S1G306200.t1"; gene_id "Ledus.S1G306200"
Ledus.S1	AUGUSTUS	start_codon	25549685	25549687	.	+	0	transcript_id "Ledus.S1G306200.t1"; gene_id "Ledus.S1G306200"
Ledus.S1	AUGUSTUS	CDS	25549685	25550533	0.91	+	0	transcript_id "Ledus.S1G306200.t1"; gene_id "Ledus.S1G306200"
Ledus.S1	AUGUSTUS	exon	25549685	25550533	.	+	.	transcript_id "Ledus.S1G306200.t1"; gene_id "Ledus.S1G306200"
Ledus.S1	AUGUSTUS	stop_codon	25550534	25550536	.	+	0	transcript_id "Ledus.S1G306200.t1"; gene_id "Ledus.S1G306200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5226.t1 is derived from g2665.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22581961	22590331	.	+	.	Ledus.S1G264700
Ledus.S1	AUGUSTUS	transcript	22581961	22590331	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	start_codon	22581961	22581963	.	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22581961	22582339	0.99	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22581961	22582339	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22582340	22582458	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22582459	22583180	1	+	2	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22582459	22583180	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22583181	22583458	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22583459	22585416	1	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22583459	22585416	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22585417	22585538	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22585539	22586579	0.82	+	1	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22585539	22586579	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22586580	22586666	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22586667	22586748	1	+	1	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22586667	22586748	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22586749	22586838	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22586839	22586889	1	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22586839	22586889	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22586890	22587016	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22587017	22587211	0.67	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22587017	22587211	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22587212	22587371	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22587372	22587739	0.46	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22587372	22587739	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22587740	22587914	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22587915	22588182	0.8	+	1	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22587915	22588182	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22588183	22588260	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22588261	22588371	1	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22588261	22588371	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22588372	22588462	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22588463	22588666	1	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22588463	22588666	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22588667	22588747	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22588748	22588942	1	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22588748	22588942	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22588943	22589044	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22589045	22589209	1	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22589045	22589209	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22589210	22589313	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22589314	22589574	1	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22589314	22589574	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22589575	22589653	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22589654	22589872	1	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22589654	22589872	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22589873	22589957	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22589958	22590177	1	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22589958	22590177	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	intron	22590178	22590314	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	CDS	22590315	22590331	1	+	2	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	exon	22590315	22590331	.	+	.	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
Ledus.S1	AUGUSTUS	stop_codon	22590332	22590334	.	+	0	transcript_id "Ledus.S1G264700.t1"; gene_id "Ledus.S1G264700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5144.t1 is derived from g2583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21931353	21932728	.	-	.	Ledus.S1G256500
Ledus.S1	AUGUSTUS	transcript	21931353	21932728	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	stop_codon	21931350	21931352	.	-	0	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	CDS	21931353	21931512	1	-	1	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	exon	21931353	21931512	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	intron	21931513	21931610	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	CDS	21931611	21931703	1	-	1	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	exon	21931611	21931703	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	intron	21931704	21931823	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	CDS	21931824	21931903	1	-	0	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	exon	21931824	21931903	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	intron	21931904	21931977	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	CDS	21931978	21932111	1	-	2	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	exon	21931978	21932111	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	intron	21932112	21932214	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	CDS	21932215	21932343	1	-	2	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	exon	21932215	21932343	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	intron	21932344	21932430	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	CDS	21932431	21932510	0.99	-	1	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	exon	21932431	21932510	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	intron	21932511	21932585	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	CDS	21932586	21932728	0.52	-	0	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	exon	21932586	21932728	.	-	.	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
Ledus.S1	AUGUSTUS	start_codon	21932726	21932728	.	-	0	transcript_id "Ledus.S1G256500.t1"; gene_id "Ledus.S1G256500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12741.t1 is derived from g6363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14178848	14180694	.	+	.	Ledus.S4G189700
Ledus.S4	AUGUSTUS	transcript	14178848	14180694	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	start_codon	14178848	14178850	.	+	0	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	CDS	14178848	14178914	0.99	+	0	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	exon	14178848	14178914	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	intron	14178915	14179287	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	CDS	14179288	14179325	1	+	2	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	exon	14179288	14179325	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	intron	14179326	14179405	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	CDS	14179406	14179477	1	+	0	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	exon	14179406	14179477	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	intron	14179478	14179716	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	CDS	14179717	14179800	1	+	0	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	exon	14179717	14179800	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	intron	14179801	14179971	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	CDS	14179972	14180006	1	+	0	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	exon	14179972	14180006	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	intron	14180007	14180137	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	CDS	14180138	14180223	1	+	1	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	exon	14180138	14180223	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	intron	14180224	14180503	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	CDS	14180504	14180569	1	+	2	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	exon	14180504	14180569	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	intron	14180570	14180662	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	CDS	14180663	14180694	1	+	2	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	exon	14180663	14180694	.	+	.	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
Ledus.S4	AUGUSTUS	stop_codon	14180695	14180697	.	+	0	transcript_id "Ledus.S4G189700.t1"; gene_id "Ledus.S4G189700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1404.t1 is derived from g8265.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9901965	9905781	.	-	.	Ledus.S2G128600
Ledus.S2	AUGUSTUS	transcript	9901965	9905781	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	stop_codon	9901962	9901964	.	-	0	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9901965	9902060	1	-	0	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9901965	9902060	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9902061	9902252	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9902253	9902402	0.95	-	0	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9902253	9902402	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9902403	9902540	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9902541	9902663	1	-	0	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9902541	9902663	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9902664	9902861	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9902862	9902976	1	-	1	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9902862	9902976	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9902977	9903171	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9903172	9903306	1	-	1	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9903172	9903306	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9903307	9903418	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9903419	9903546	0.96	-	0	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9903419	9903546	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9903547	9903630	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9903631	9903727	1	-	1	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9903631	9903727	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9903728	9903896	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9903897	9903992	1	-	1	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9903897	9903992	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9903993	9904354	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9904355	9904387	0.93	-	1	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9904355	9904387	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9904388	9904489	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9904490	9904617	0.77	-	0	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9904490	9904617	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9904618	9904761	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9904762	9904872	0.82	-	0	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9904762	9904872	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9904873	9904969	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9904970	9904980	0.47	-	2	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9904970	9904980	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9904981	9905146	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9905147	9905306	0.25	-	0	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9905147	9905306	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	intron	9905307	9905424	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	CDS	9905425	9905781	0.99	-	0	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	exon	9905425	9905781	.	-	.	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
Ledus.S2	AUGUSTUS	start_codon	9905779	9905781	.	-	0	transcript_id "Ledus.S2G128600.t1"; gene_id "Ledus.S2G128600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2722.t1 is derived from g155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2526435	2529699	.	+	.	Ledus.S1G014300
Ledus.S1	AUGUSTUS	transcript	2526435	2529699	.	+	.	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	start_codon	2526435	2526437	.	+	0	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	CDS	2526435	2526555	0.97	+	0	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	exon	2526435	2526555	.	+	.	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	intron	2526556	2526639	.	+	.	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	CDS	2526640	2526674	1	+	2	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	exon	2526640	2526674	.	+	.	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	intron	2526675	2526757	.	+	.	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	CDS	2526758	2526903	0.99	+	0	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	exon	2526758	2526903	.	+	.	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	intron	2526904	2527013	.	+	.	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	CDS	2527014	2529699	0.99	+	1	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	exon	2527014	2529699	.	+	.	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
Ledus.S1	AUGUSTUS	stop_codon	2529700	2529702	.	+	0	transcript_id "Ledus.S1G014300.t1"; gene_id "Ledus.S1G014300"
# This transcript jg3991.t2 is derived from g1427.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3991.t3 is derived from g1427.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3992.t1 is derived from g1428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13933953	13941703	.	+	.	Ledus.S1G141300
Ledus.S1	AUGUSTUS	transcript	13933953	13941703	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	start_codon	13933953	13933955	.	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13933953	13934016	0.65	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13933953	13934016	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13934017	13934105	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13934106	13934204	0.72	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13934106	13934204	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13934205	13934303	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13934304	13934330	0.68	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13934304	13934330	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13934331	13934419	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13934420	13934677	0.53	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13934420	13934677	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13934678	13934805	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13934806	13934822	0.99	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13934806	13934822	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13934823	13934894	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13934895	13934910	0.99	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13934895	13934910	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13934911	13935009	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13935010	13935071	1	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13935010	13935071	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13935072	13935162	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13935163	13935245	1	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13935163	13935245	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13935246	13935374	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13935375	13935450	1	+	1	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13935375	13935450	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13935451	13935593	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13935594	13935668	1	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13935594	13935668	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13935669	13935755	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13935756	13935812	1	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13935756	13935812	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13935813	13935928	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13935929	13935974	0.99	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13935929	13935974	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13935975	13936077	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13936078	13936153	0.98	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13936078	13936153	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13936154	13936274	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13936275	13936350	1	+	1	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13936275	13936350	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13936351	13936434	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13936435	13936467	0.99	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13936435	13936467	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13936468	13936569	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13936570	13936638	0.97	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13936570	13936638	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13936639	13936723	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13936724	13936830	1	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13936724	13936830	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13936831	13936926	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13936927	13936999	1	+	1	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13936927	13936999	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13937000	13937093	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13937094	13937132	1	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13937094	13937132	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13937133	13937230	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13937231	13937325	1	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13937231	13937325	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13937326	13937418	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13937419	13937525	0.95	+	1	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13937419	13937525	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13937526	13937637	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13937638	13937826	0.33	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13937638	13937826	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13937827	13937941	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13937942	13938036	0.49	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13937942	13938036	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13938037	13938182	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13938183	13938357	1	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13938183	13938357	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13938358	13938433	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13938434	13939015	1	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13938434	13939015	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13939016	13939178	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13939179	13939334	1	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13939179	13939334	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13939335	13939451	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13939452	13939552	1	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13939452	13939552	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13939553	13939697	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13939698	13939812	1	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13939698	13939812	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13939813	13939906	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13939907	13940035	1	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13939907	13940035	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13940036	13940404	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13940405	13940523	1	+	2	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13940405	13940523	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13940524	13940614	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13940615	13940772	1	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13940615	13940772	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13940773	13940868	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13940869	13941703	0.79	+	1	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13940869	13941703	.	+	.	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	stop_codon	13941704	13941706	.	+	0	transcript_id "Ledus.S1G141300.t1"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	transcript	13933953	13941703	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	start_codon	13933953	13933955	.	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13933953	13934016	0.63	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13933953	13934016	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13934017	13934105	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13934106	13934204	0.71	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13934106	13934204	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13934205	13934303	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13934304	13934330	0.62	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13934304	13934330	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13934331	13934419	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13934420	13934677	0.51	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13934420	13934677	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13934678	13934805	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13934806	13934822	0.99	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13934806	13934822	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13934823	13934894	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13934895	13934910	0.99	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13934895	13934910	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13934911	13935009	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13935010	13935071	1	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13935010	13935071	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13935072	13935162	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13935163	13935245	1	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13935163	13935245	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13935246	13935374	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13935375	13935450	1	+	1	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13935375	13935450	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13935451	13935593	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13935594	13935668	1	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13935594	13935668	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13935669	13935755	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13935756	13935812	1	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13935756	13935812	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13935813	13935928	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13935929	13935974	1	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13935929	13935974	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13935975	13936077	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13936078	13936153	1	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13936078	13936153	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13936154	13936274	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13936275	13936350	1	+	1	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13936275	13936350	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13936351	13936434	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13936435	13936467	0.98	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13936435	13936467	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13936468	13936569	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13936570	13936638	0.97	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13936570	13936638	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13936639	13936723	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13936724	13936830	1	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13936724	13936830	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13936831	13936926	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13936927	13936999	1	+	1	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13936927	13936999	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13937000	13937093	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13937094	13937132	1	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13937094	13937132	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13937133	13937230	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13937231	13937325	1	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13937231	13937325	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13937326	13937418	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13937419	13937525	0.99	+	1	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13937419	13937525	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13937526	13937637	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13937638	13937826	0.34	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13937638	13937826	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13937827	13937941	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13937942	13938036	0.51	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13937942	13938036	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13938037	13938182	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13938183	13938357	1	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13938183	13938357	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13938358	13938433	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13938434	13939015	1	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13938434	13939015	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13939016	13939178	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13939179	13939334	1	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13939179	13939334	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13939335	13939451	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13939452	13939552	1	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13939452	13939552	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13939553	13939697	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13939698	13939812	1	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13939698	13939812	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13939813	13939906	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13939907	13940035	1	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13939907	13940035	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13940036	13940254	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13940255	13940523	0.6	+	2	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13940255	13940523	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13940524	13940614	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13940615	13940772	1	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13940615	13940772	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	intron	13940773	13940868	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	CDS	13940869	13941703	0.75	+	1	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	exon	13940869	13941703	.	+	.	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
Ledus.S1	AUGUSTUS	stop_codon	13941704	13941706	.	+	0	transcript_id "Ledus.S1G141300.t2"; gene_id "Ledus.S1G141300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5174.t1 is derived from g2613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22157467	22158798	.	+	.	Ledus.S1G259500
Ledus.S1	AUGUSTUS	transcript	22157467	22158798	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	start_codon	22157467	22157469	.	+	0	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	CDS	22157467	22157626	0.97	+	0	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	exon	22157467	22157626	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	intron	22157627	22157724	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	CDS	22157725	22157877	1	+	2	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	exon	22157725	22157877	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	intron	22157878	22157963	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	CDS	22157964	22158061	1	+	2	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	exon	22157964	22158061	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	intron	22158062	22158138	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	CDS	22158139	22158210	1	+	0	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	exon	22158139	22158210	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	intron	22158211	22158306	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	CDS	22158307	22158431	1	+	0	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	exon	22158307	22158431	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	intron	22158432	22158524	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	CDS	22158525	22158597	1	+	1	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	exon	22158525	22158597	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	intron	22158598	22158696	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	CDS	22158697	22158798	1	+	0	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	exon	22158697	22158798	.	+	.	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
Ledus.S1	AUGUSTUS	stop_codon	22158799	22158801	.	+	0	transcript_id "Ledus.S1G259500.t1"; gene_id "Ledus.S1G259500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11258.t1 is derived from g4876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2979571	2980095	.	+	.	Ledus.S4G041400
Ledus.S4	AUGUSTUS	transcript	2979571	2980095	.	+	.	transcript_id "Ledus.S4G041400.t1"; gene_id "Ledus.S4G041400"
Ledus.S4	AUGUSTUS	start_codon	2979571	2979573	.	+	0	transcript_id "Ledus.S4G041400.t1"; gene_id "Ledus.S4G041400"
Ledus.S4	AUGUSTUS	CDS	2979571	2980095	0.97	+	0	transcript_id "Ledus.S4G041400.t1"; gene_id "Ledus.S4G041400"
Ledus.S4	AUGUSTUS	exon	2979571	2980095	.	+	.	transcript_id "Ledus.S4G041400.t1"; gene_id "Ledus.S4G041400"
Ledus.S4	AUGUSTUS	stop_codon	2980096	2980098	.	+	0	transcript_id "Ledus.S4G041400.t1"; gene_id "Ledus.S4G041400"
# This transcript jg7175.t2 is derived from g6706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7176.t1 is derived from g6707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1965691	1966361	.	-	.	Ledus.C7G023700
Ledus.C7	AUGUSTUS	transcript	1965691	1966361	.	-	.	transcript_id "Ledus.C7G023700.t1"; gene_id "Ledus.C7G023700"
Ledus.C7	AUGUSTUS	stop_codon	1965688	1965690	.	-	0	transcript_id "Ledus.C7G023700.t1"; gene_id "Ledus.C7G023700"
Ledus.C7	AUGUSTUS	CDS	1965691	1965846	0.44	-	0	transcript_id "Ledus.C7G023700.t1"; gene_id "Ledus.C7G023700"
Ledus.C7	AUGUSTUS	exon	1965691	1965846	.	-	.	transcript_id "Ledus.C7G023700.t1"; gene_id "Ledus.C7G023700"
Ledus.C7	AUGUSTUS	intron	1965847	1966088	.	-	.	transcript_id "Ledus.C7G023700.t1"; gene_id "Ledus.C7G023700"
Ledus.C7	AUGUSTUS	CDS	1966089	1966127	0.74	-	0	transcript_id "Ledus.C7G023700.t1"; gene_id "Ledus.C7G023700"
Ledus.C7	AUGUSTUS	exon	1966089	1966127	.	-	.	transcript_id "Ledus.C7G023700.t1"; gene_id "Ledus.C7G023700"
Ledus.C7	AUGUSTUS	intron	1966128	1966235	.	-	.	transcript_id "Ledus.C7G023700.t1"; gene_id "Ledus.C7G023700"
Ledus.C7	AUGUSTUS	CDS	1966236	1966361	0.53	-	0	transcript_id "Ledus.C7G023700.t1"; gene_id "Ledus.C7G023700"
Ledus.C7	AUGUSTUS	exon	1966236	1966361	.	-	.	transcript_id "Ledus.C7G023700.t1"; gene_id "Ledus.C7G023700"
Ledus.C7	AUGUSTUS	start_codon	1966359	1966361	.	-	0	transcript_id "Ledus.C7G023700.t1"; gene_id "Ledus.C7G023700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4165.t1 is derived from g1601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15085925	15089291	.	+	.	Ledus.S1G158600
Ledus.S1	AUGUSTUS	transcript	15085925	15089291	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	start_codon	15085925	15085927	.	+	0	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	CDS	15085925	15086083	1	+	0	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	exon	15085925	15086083	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	intron	15086084	15086161	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	CDS	15086162	15086217	1	+	0	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	exon	15086162	15086217	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	intron	15086218	15086294	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	CDS	15086295	15086361	1	+	1	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	exon	15086295	15086361	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	intron	15086362	15086448	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	CDS	15086449	15086534	1	+	0	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	exon	15086449	15086534	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	intron	15086535	15086663	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	CDS	15086664	15086982	0.97	+	1	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	exon	15086664	15086982	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	intron	15086983	15087087	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	CDS	15087088	15087176	1	+	0	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	exon	15087088	15087176	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	intron	15087177	15087373	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	CDS	15087374	15087449	1	+	1	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	exon	15087374	15087449	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	intron	15087450	15087591	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	CDS	15087592	15087693	1	+	0	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	exon	15087592	15087693	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	intron	15087694	15087785	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	CDS	15087786	15087911	1	+	0	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	exon	15087786	15087911	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	intron	15087912	15087995	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	CDS	15087996	15088256	1	+	0	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	exon	15087996	15088256	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	intron	15088257	15088351	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	CDS	15088352	15088501	0.84	+	0	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	exon	15088352	15088501	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	intron	15088502	15089072	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	CDS	15089073	15089291	0.73	+	0	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	exon	15089073	15089291	.	+	.	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
Ledus.S1	AUGUSTUS	stop_codon	15089292	15089294	.	+	0	transcript_id "Ledus.S1G158600.t1"; gene_id "Ledus.S1G158600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10238.t1 is derived from g11268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13727266	13728090	.	-	.	Ledus.S3G171500
Ledus.S3	AUGUSTUS	transcript	13727266	13728090	.	-	.	transcript_id "Ledus.S3G171500.t1"; gene_id "Ledus.S3G171500"
Ledus.S3	AUGUSTUS	stop_codon	13727263	13727265	.	-	0	transcript_id "Ledus.S3G171500.t1"; gene_id "Ledus.S3G171500"
Ledus.S3	AUGUSTUS	CDS	13727266	13728090	0.39	-	0	transcript_id "Ledus.S3G171500.t1"; gene_id "Ledus.S3G171500"
Ledus.S3	AUGUSTUS	exon	13727266	13728090	.	-	.	transcript_id "Ledus.S3G171500.t1"; gene_id "Ledus.S3G171500"
Ledus.S3	AUGUSTUS	start_codon	13728088	13728090	.	-	0	transcript_id "Ledus.S3G171500.t1"; gene_id "Ledus.S3G171500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11515.t1 is derived from g5133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5009931	5013492	.	+	.	Ledus.S4G067100
Ledus.S4	AUGUSTUS	transcript	5009931	5013492	.	+	.	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	start_codon	5009931	5009933	.	+	0	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	CDS	5009931	5011157	0.4	+	0	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	exon	5009931	5011157	.	+	.	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	intron	5011158	5011284	.	+	.	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	CDS	5011285	5013182	0.56	+	0	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	exon	5011285	5013182	.	+	.	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	intron	5013183	5013369	.	+	.	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	CDS	5013370	5013394	0.56	+	1	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	exon	5013370	5013394	.	+	.	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	intron	5013395	5013486	.	+	.	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	CDS	5013487	5013492	0.56	+	0	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	exon	5013487	5013492	.	+	.	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
Ledus.S4	AUGUSTUS	stop_codon	5013493	5013495	.	+	0	transcript_id "Ledus.S4G067100.t1"; gene_id "Ledus.S4G067100"
# This transcript jg6166.t2 is derived from g3609.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6167.t1 is derived from g3610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29353857	29354159	.	+	.	Ledus.S1G358800
Ledus.S1	AUGUSTUS	transcript	29353857	29354159	.	+	.	transcript_id "Ledus.S1G358800.t1"; gene_id "Ledus.S1G358800"
Ledus.S1	AUGUSTUS	start_codon	29353857	29353859	.	+	0	transcript_id "Ledus.S1G358800.t1"; gene_id "Ledus.S1G358800"
Ledus.S1	AUGUSTUS	CDS	29353857	29354159	0.96	+	0	transcript_id "Ledus.S1G358800.t1"; gene_id "Ledus.S1G358800"
Ledus.S1	AUGUSTUS	exon	29353857	29354159	.	+	.	transcript_id "Ledus.S1G358800.t1"; gene_id "Ledus.S1G358800"
Ledus.S1	AUGUSTUS	stop_codon	29354160	29354162	.	+	0	transcript_id "Ledus.S1G358800.t1"; gene_id "Ledus.S1G358800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6837.t1 is derived from g4281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34567071	34568422	.	-	.	Ledus.S1G425800
Ledus.S1	AUGUSTUS	transcript	34567071	34568422	.	-	.	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	stop_codon	34567068	34567070	.	-	0	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	CDS	34567071	34567174	0.99	-	2	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	exon	34567071	34567174	.	-	.	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	intron	34567175	34567264	.	-	.	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	CDS	34567265	34567375	1	-	2	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	exon	34567265	34567375	.	-	.	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	intron	34567376	34567461	.	-	.	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	CDS	34567462	34567777	0.99	-	0	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	exon	34567462	34567777	.	-	.	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	intron	34567778	34567853	.	-	.	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	CDS	34567854	34567913	1	-	0	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	exon	34567854	34567913	.	-	.	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	intron	34567914	34567998	.	-	.	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	CDS	34567999	34568129	1	-	2	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	exon	34567999	34568129	.	-	.	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	intron	34568130	34568211	.	-	.	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	CDS	34568212	34568422	0.77	-	0	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	exon	34568212	34568422	.	-	.	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
Ledus.S1	AUGUSTUS	start_codon	34568420	34568422	.	-	0	transcript_id "Ledus.S1G425800.t1"; gene_id "Ledus.S1G425800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg567.t1 is derived from g7428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3383975	3386974	.	-	.	Ledus.S2G044900
Ledus.S2	AUGUSTUS	transcript	3383975	3386974	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	stop_codon	3383972	3383974	.	-	0	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	CDS	3383975	3384227	0.96	-	1	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	exon	3383975	3384227	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	intron	3384228	3384318	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	CDS	3384319	3384396	1	-	1	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	exon	3384319	3384396	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	intron	3384397	3384544	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	CDS	3384545	3384937	0.98	-	1	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	exon	3384545	3384937	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	intron	3384938	3385028	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	CDS	3385029	3385338	1	-	2	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	exon	3385029	3385338	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	intron	3385339	3385418	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	CDS	3385419	3385629	1	-	0	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	exon	3385419	3385629	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	intron	3385630	3385712	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	CDS	3385713	3386353	1	-	2	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	exon	3385713	3386353	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	intron	3386354	3386439	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	CDS	3386440	3386491	0.98	-	0	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	exon	3386440	3386491	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	intron	3386492	3386606	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	CDS	3386607	3386781	0.47	-	1	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	exon	3386607	3386781	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	intron	3386782	3386864	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	CDS	3386865	3386974	0.64	-	0	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	exon	3386865	3386974	.	-	.	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
Ledus.S2	AUGUSTUS	start_codon	3386972	3386974	.	-	0	transcript_id "Ledus.S2G044900.t1"; gene_id "Ledus.S2G044900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4372.t1 is derived from g1808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16680048	16681451	.	-	.	Ledus.S1G179300
Ledus.S1	AUGUSTUS	transcript	16680048	16681451	.	-	.	transcript_id "Ledus.S1G179300.t1"; gene_id "Ledus.S1G179300"
Ledus.S1	AUGUSTUS	stop_codon	16680045	16680047	.	-	0	transcript_id "Ledus.S1G179300.t1"; gene_id "Ledus.S1G179300"
Ledus.S1	AUGUSTUS	CDS	16680048	16681451	1	-	0	transcript_id "Ledus.S1G179300.t1"; gene_id "Ledus.S1G179300"
Ledus.S1	AUGUSTUS	exon	16680048	16681451	.	-	.	transcript_id "Ledus.S1G179300.t1"; gene_id "Ledus.S1G179300"
Ledus.S1	AUGUSTUS	start_codon	16681449	16681451	.	-	0	transcript_id "Ledus.S1G179300.t1"; gene_id "Ledus.S1G179300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3040.t1 is derived from g475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5447721	5451356	.	-	.	Ledus.S1G046100
Ledus.S1	AUGUSTUS	transcript	5447721	5451356	.	-	.	transcript_id "Ledus.S1G046100.t1"; gene_id "Ledus.S1G046100"
Ledus.S1	AUGUSTUS	stop_codon	5447718	5447720	.	-	0	transcript_id "Ledus.S1G046100.t1"; gene_id "Ledus.S1G046100"
Ledus.S1	AUGUSTUS	CDS	5447721	5447816	1	-	0	transcript_id "Ledus.S1G046100.t1"; gene_id "Ledus.S1G046100"
Ledus.S1	AUGUSTUS	exon	5447721	5447816	.	-	.	transcript_id "Ledus.S1G046100.t1"; gene_id "Ledus.S1G046100"
Ledus.S1	AUGUSTUS	intron	5447817	5448480	.	-	.	transcript_id "Ledus.S1G046100.t1"; gene_id "Ledus.S1G046100"
Ledus.S1	AUGUSTUS	CDS	5448481	5448929	1	-	2	transcript_id "Ledus.S1G046100.t1"; gene_id "Ledus.S1G046100"
Ledus.S1	AUGUSTUS	exon	5448481	5448929	.	-	.	transcript_id "Ledus.S1G046100.t1"; gene_id "Ledus.S1G046100"
Ledus.S1	AUGUSTUS	intron	5448930	5449015	.	-	.	transcript_id "Ledus.S1G046100.t1"; gene_id "Ledus.S1G046100"
Ledus.S1	AUGUSTUS	CDS	5449016	5451356	1	-	0	transcript_id "Ledus.S1G046100.t1"; gene_id "Ledus.S1G046100"
Ledus.S1	AUGUSTUS	exon	5449016	5451356	.	-	.	transcript_id "Ledus.S1G046100.t1"; gene_id "Ledus.S1G046100"
Ledus.S1	AUGUSTUS	start_codon	5451354	5451356	.	-	0	transcript_id "Ledus.S1G046100.t1"; gene_id "Ledus.S1G046100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2828.t1 is derived from g262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3989913	3990682	.	-	.	Ledus.S1G024900
Ledus.S1	AUGUSTUS	transcript	3989913	3990682	.	-	.	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	stop_codon	3989910	3989912	.	-	0	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	CDS	3989913	3989978	0.99	-	0	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	exon	3989913	3989978	.	-	.	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	intron	3989979	3990057	.	-	.	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	CDS	3990058	3990105	1	-	0	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	exon	3990058	3990105	.	-	.	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	intron	3990106	3990220	.	-	.	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	CDS	3990221	3990378	1	-	2	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	exon	3990221	3990378	.	-	.	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	intron	3990379	3990588	.	-	.	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	CDS	3990589	3990682	0.93	-	0	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	exon	3990589	3990682	.	-	.	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
Ledus.S1	AUGUSTUS	start_codon	3990680	3990682	.	-	0	transcript_id "Ledus.S1G024900.t1"; gene_id "Ledus.S1G024900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10316.t1 is derived from g11346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14202338	14205389	.	+	.	Ledus.S3G179300
Ledus.S3	AUGUSTUS	transcript	14202338	14205389	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	start_codon	14202338	14202340	.	+	0	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	CDS	14202338	14202434	0.93	+	0	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	exon	14202338	14202434	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	intron	14202435	14202575	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	CDS	14202576	14202647	0.99	+	2	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	exon	14202576	14202647	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	intron	14202648	14202725	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	CDS	14202726	14202825	1	+	2	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	exon	14202726	14202825	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	intron	14202826	14202959	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	CDS	14202960	14203902	0.99	+	1	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	exon	14202960	14203902	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	intron	14203903	14204041	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	CDS	14204042	14204175	1	+	0	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	exon	14204042	14204175	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	intron	14204176	14204337	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	CDS	14204338	14205243	0.45	+	1	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	exon	14204338	14205243	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	intron	14205244	14205340	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	CDS	14205341	14205389	0.36	+	1	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	exon	14205341	14205389	.	+	.	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
Ledus.S3	AUGUSTUS	stop_codon	14205390	14205392	.	+	0	transcript_id "Ledus.S3G179300.t1"; gene_id "Ledus.S3G179300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5756.t1 is derived from g3197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26512059	26515081	.	-	.	Ledus.S1G317700
Ledus.S1	AUGUSTUS	transcript	26512059	26515081	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	stop_codon	26512056	26512058	.	-	0	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26512059	26512247	1	-	0	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26512059	26512247	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	intron	26512248	26512359	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26512360	26512554	0.98	-	0	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26512360	26512554	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	intron	26512555	26512657	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26512658	26512768	0.99	-	0	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26512658	26512768	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	intron	26512769	26512884	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26512885	26512975	1	-	1	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26512885	26512975	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	intron	26512976	26513119	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26513120	26513214	1	-	0	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26513120	26513214	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	intron	26513215	26513334	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26513335	26513583	0.71	-	0	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26513335	26513583	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	intron	26513584	26513735	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26513736	26513780	1	-	0	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26513736	26513780	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	intron	26513781	26513897	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26513898	26513953	1	-	2	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26513898	26513953	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	intron	26513954	26514116	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26514117	26514191	1	-	2	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26514117	26514191	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	intron	26514192	26514347	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26514348	26514415	1	-	1	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26514348	26514415	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	intron	26514416	26514575	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26514576	26514603	0.99	-	2	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26514576	26514603	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	intron	26514604	26514721	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26514722	26514776	0.99	-	0	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26514722	26514776	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	intron	26514777	26515009	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	CDS	26515010	26515081	0.96	-	0	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	exon	26515010	26515081	.	-	.	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
Ledus.S1	AUGUSTUS	start_codon	26515079	26515081	.	-	0	transcript_id "Ledus.S1G317700.t1"; gene_id "Ledus.S1G317700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2014.t1 is derived from g8877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14188117	14188914	.	-	.	Ledus.S2G189600
Ledus.S2	AUGUSTUS	transcript	14188117	14188914	.	-	.	transcript_id "Ledus.S2G189600.t1"; gene_id "Ledus.S2G189600"
Ledus.S2	AUGUSTUS	stop_codon	14188114	14188116	.	-	0	transcript_id "Ledus.S2G189600.t1"; gene_id "Ledus.S2G189600"
Ledus.S2	AUGUSTUS	CDS	14188117	14188914	0.98	-	0	transcript_id "Ledus.S2G189600.t1"; gene_id "Ledus.S2G189600"
Ledus.S2	AUGUSTUS	exon	14188117	14188914	.	-	.	transcript_id "Ledus.S2G189600.t1"; gene_id "Ledus.S2G189600"
Ledus.S2	AUGUSTUS	start_codon	14188912	14188914	.	-	0	transcript_id "Ledus.S2G189600.t1"; gene_id "Ledus.S2G189600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5515.t1 is derived from g2954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24729937	24734397	.	-	.	Ledus.S1G293600
Ledus.S1	AUGUSTUS	transcript	24729937	24734397	.	-	.	transcript_id "Ledus.S1G293600.t1"; gene_id "Ledus.S1G293600"
Ledus.S1	AUGUSTUS	stop_codon	24729934	24729936	.	-	0	transcript_id "Ledus.S1G293600.t1"; gene_id "Ledus.S1G293600"
Ledus.S1	AUGUSTUS	CDS	24729937	24734397	0.43	-	0	transcript_id "Ledus.S1G293600.t1"; gene_id "Ledus.S1G293600"
Ledus.S1	AUGUSTUS	exon	24729937	24734397	.	-	.	transcript_id "Ledus.S1G293600.t1"; gene_id "Ledus.S1G293600"
Ledus.S1	AUGUSTUS	start_codon	24734395	24734397	.	-	0	transcript_id "Ledus.S1G293600.t1"; gene_id "Ledus.S1G293600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6998.t1 is derived from g6529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	725376	729006	.	-	.	Ledus.C7G005900
Ledus.C7	AUGUSTUS	transcript	725376	729006	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	stop_codon	725373	725375	.	-	0	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	CDS	725376	725397	0.99	-	1	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	exon	725376	725397	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	intron	725398	725749	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	CDS	725750	726351	0.99	-	0	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	exon	725750	726351	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	intron	726352	726443	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	CDS	726444	726495	1	-	1	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	exon	726444	726495	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	intron	726496	726833	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	CDS	726834	727260	1	-	2	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	exon	726834	727260	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	intron	727261	727431	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	CDS	727432	727641	0.56	-	2	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	exon	727432	727641	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	intron	727642	727737	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	CDS	727738	727984	0.22	-	0	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	exon	727738	727984	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	intron	727985	728736	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	CDS	728737	729006	0.76	-	0	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	exon	728737	729006	.	-	.	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
Ledus.C7	AUGUSTUS	start_codon	729004	729006	.	-	0	transcript_id "Ledus.C7G005900.t1"; gene_id "Ledus.C7G005900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2349.t1 is derived from g9212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17387764	17391441	.	+	.	Ledus.S2G223100
Ledus.S2	AUGUSTUS	transcript	17387764	17391441	.	+	.	transcript_id "Ledus.S2G223100.t1"; gene_id "Ledus.S2G223100"
Ledus.S2	AUGUSTUS	start_codon	17387764	17387766	.	+	0	transcript_id "Ledus.S2G223100.t1"; gene_id "Ledus.S2G223100"
Ledus.S2	AUGUSTUS	CDS	17387764	17387919	0.79	+	0	transcript_id "Ledus.S2G223100.t1"; gene_id "Ledus.S2G223100"
Ledus.S2	AUGUSTUS	exon	17387764	17387919	.	+	.	transcript_id "Ledus.S2G223100.t1"; gene_id "Ledus.S2G223100"
Ledus.S2	AUGUSTUS	intron	17387920	17388022	.	+	.	transcript_id "Ledus.S2G223100.t1"; gene_id "Ledus.S2G223100"
Ledus.S2	AUGUSTUS	CDS	17388023	17388168	0.8	+	0	transcript_id "Ledus.S2G223100.t1"; gene_id "Ledus.S2G223100"
Ledus.S2	AUGUSTUS	exon	17388023	17388168	.	+	.	transcript_id "Ledus.S2G223100.t1"; gene_id "Ledus.S2G223100"
Ledus.S2	AUGUSTUS	intron	17388169	17388272	.	+	.	transcript_id "Ledus.S2G223100.t1"; gene_id "Ledus.S2G223100"
Ledus.S2	AUGUSTUS	CDS	17388273	17391441	0.96	+	1	transcript_id "Ledus.S2G223100.t1"; gene_id "Ledus.S2G223100"
Ledus.S2	AUGUSTUS	exon	17388273	17391441	.	+	.	transcript_id "Ledus.S2G223100.t1"; gene_id "Ledus.S2G223100"
Ledus.S2	AUGUSTUS	stop_codon	17391442	17391444	.	+	0	transcript_id "Ledus.S2G223100.t1"; gene_id "Ledus.S2G223100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8171.t1 is derived from g12842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9605040	9605279	.	+	.	Ledus.S5G094900
Ledus.S5	AUGUSTUS	transcript	9605040	9605279	.	+	.	transcript_id "Ledus.S5G094900.t1"; gene_id "Ledus.S5G094900"
Ledus.S5	AUGUSTUS	start_codon	9605040	9605042	.	+	0	transcript_id "Ledus.S5G094900.t1"; gene_id "Ledus.S5G094900"
Ledus.S5	AUGUSTUS	CDS	9605040	9605279	0.42	+	0	transcript_id "Ledus.S5G094900.t1"; gene_id "Ledus.S5G094900"
Ledus.S5	AUGUSTUS	exon	9605040	9605279	.	+	.	transcript_id "Ledus.S5G094900.t1"; gene_id "Ledus.S5G094900"
Ledus.S5	AUGUSTUS	stop_codon	9605280	9605282	.	+	0	transcript_id "Ledus.S5G094900.t1"; gene_id "Ledus.S5G094900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10771.t1 is derived from g11803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17572067	17573849	.	+	.	Ledus.S3G224800
Ledus.S3	AUGUSTUS	transcript	17572067	17573849	.	+	.	transcript_id "Ledus.S3G224800.t1"; gene_id "Ledus.S3G224800"
Ledus.S3	AUGUSTUS	start_codon	17572067	17572069	.	+	0	transcript_id "Ledus.S3G224800.t1"; gene_id "Ledus.S3G224800"
Ledus.S3	AUGUSTUS	CDS	17572067	17572135	0.6	+	0	transcript_id "Ledus.S3G224800.t1"; gene_id "Ledus.S3G224800"
Ledus.S3	AUGUSTUS	exon	17572067	17572135	.	+	.	transcript_id "Ledus.S3G224800.t1"; gene_id "Ledus.S3G224800"
Ledus.S3	AUGUSTUS	intron	17572136	17572424	.	+	.	transcript_id "Ledus.S3G224800.t1"; gene_id "Ledus.S3G224800"
Ledus.S3	AUGUSTUS	CDS	17572425	17573849	0.99	+	0	transcript_id "Ledus.S3G224800.t1"; gene_id "Ledus.S3G224800"
Ledus.S3	AUGUSTUS	exon	17572425	17573849	.	+	.	transcript_id "Ledus.S3G224800.t1"; gene_id "Ledus.S3G224800"
Ledus.S3	AUGUSTUS	stop_codon	17573850	17573852	.	+	0	transcript_id "Ledus.S3G224800.t1"; gene_id "Ledus.S3G224800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4419.t1 is derived from g1855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17015674	17017485	.	-	.	Ledus.S1G184000
Ledus.S1	AUGUSTUS	transcript	17015674	17017485	.	-	.	transcript_id "Ledus.S1G184000.t1"; gene_id "Ledus.S1G184000"
Ledus.S1	AUGUSTUS	stop_codon	17015671	17015673	.	-	0	transcript_id "Ledus.S1G184000.t1"; gene_id "Ledus.S1G184000"
Ledus.S1	AUGUSTUS	CDS	17015674	17015713	0.69	-	1	transcript_id "Ledus.S1G184000.t1"; gene_id "Ledus.S1G184000"
Ledus.S1	AUGUSTUS	exon	17015674	17015713	.	-	.	transcript_id "Ledus.S1G184000.t1"; gene_id "Ledus.S1G184000"
Ledus.S1	AUGUSTUS	intron	17015714	17016129	.	-	.	transcript_id "Ledus.S1G184000.t1"; gene_id "Ledus.S1G184000"
Ledus.S1	AUGUSTUS	CDS	17016130	17016138	0.92	-	1	transcript_id "Ledus.S1G184000.t1"; gene_id "Ledus.S1G184000"
Ledus.S1	AUGUSTUS	exon	17016130	17016138	.	-	.	transcript_id "Ledus.S1G184000.t1"; gene_id "Ledus.S1G184000"
Ledus.S1	AUGUSTUS	intron	17016139	17016229	.	-	.	transcript_id "Ledus.S1G184000.t1"; gene_id "Ledus.S1G184000"
Ledus.S1	AUGUSTUS	CDS	17016230	17017485	0.95	-	0	transcript_id "Ledus.S1G184000.t1"; gene_id "Ledus.S1G184000"
Ledus.S1	AUGUSTUS	exon	17016230	17017485	.	-	.	transcript_id "Ledus.S1G184000.t1"; gene_id "Ledus.S1G184000"
Ledus.S1	AUGUSTUS	start_codon	17017483	17017485	.	-	0	transcript_id "Ledus.S1G184000.t1"; gene_id "Ledus.S1G184000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6689.t1 is derived from g4132.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33280172	33281600	.	+	.	Ledus.S1G411000
Ledus.S1	AUGUSTUS	transcript	33280172	33281600	.	+	.	transcript_id "Ledus.S1G411000.t1"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	start_codon	33280172	33280174	.	+	0	transcript_id "Ledus.S1G411000.t1"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	CDS	33280172	33280726	0.76	+	0	transcript_id "Ledus.S1G411000.t1"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	exon	33280172	33280726	.	+	.	transcript_id "Ledus.S1G411000.t1"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	intron	33280727	33281198	.	+	.	transcript_id "Ledus.S1G411000.t1"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	CDS	33281199	33281256	0.99	+	0	transcript_id "Ledus.S1G411000.t1"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	exon	33281199	33281256	.	+	.	transcript_id "Ledus.S1G411000.t1"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	intron	33281257	33281547	.	+	.	transcript_id "Ledus.S1G411000.t1"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	CDS	33281548	33281600	0.68	+	2	transcript_id "Ledus.S1G411000.t1"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	exon	33281548	33281600	.	+	.	transcript_id "Ledus.S1G411000.t1"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	stop_codon	33281601	33281603	.	+	0	transcript_id "Ledus.S1G411000.t1"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	transcript	33280172	33281600	.	+	.	transcript_id "Ledus.S1G411000.t2"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	start_codon	33280172	33280174	.	+	0	transcript_id "Ledus.S1G411000.t2"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	CDS	33280172	33280726	0.79	+	0	transcript_id "Ledus.S1G411000.t2"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	exon	33280172	33280726	.	+	.	transcript_id "Ledus.S1G411000.t2"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	intron	33280727	33281198	.	+	.	transcript_id "Ledus.S1G411000.t2"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	CDS	33281199	33281250	1	+	0	transcript_id "Ledus.S1G411000.t2"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	exon	33281199	33281250	.	+	.	transcript_id "Ledus.S1G411000.t2"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	intron	33281251	33281547	.	+	.	transcript_id "Ledus.S1G411000.t2"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	CDS	33281548	33281600	0.52	+	2	transcript_id "Ledus.S1G411000.t2"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	exon	33281548	33281600	.	+	.	transcript_id "Ledus.S1G411000.t2"; gene_id "Ledus.S1G411000"
Ledus.S1	AUGUSTUS	stop_codon	33281601	33281603	.	+	0	transcript_id "Ledus.S1G411000.t2"; gene_id "Ledus.S1G411000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8833.t1 is derived from g9863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2203759	2207214	.	+	.	Ledus.S3G031000
Ledus.S3	AUGUSTUS	transcript	2203759	2207214	.	+	.	transcript_id "Ledus.S3G031000.t1"; gene_id "Ledus.S3G031000"
Ledus.S3	AUGUSTUS	start_codon	2203759	2203761	.	+	0	transcript_id "Ledus.S3G031000.t1"; gene_id "Ledus.S3G031000"
Ledus.S3	AUGUSTUS	CDS	2203759	2207214	0.95	+	0	transcript_id "Ledus.S3G031000.t1"; gene_id "Ledus.S3G031000"
Ledus.S3	AUGUSTUS	exon	2203759	2207214	.	+	.	transcript_id "Ledus.S3G031000.t1"; gene_id "Ledus.S3G031000"
Ledus.S3	AUGUSTUS	stop_codon	2207215	2207217	.	+	0	transcript_id "Ledus.S3G031000.t1"; gene_id "Ledus.S3G031000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8800.t1 is derived from g9830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2042323	2044104	.	-	.	Ledus.S3G027700
Ledus.S3	AUGUSTUS	transcript	2042323	2044104	.	-	.	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	stop_codon	2042320	2042322	.	-	0	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	CDS	2042323	2042378	1	-	2	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	exon	2042323	2042378	.	-	.	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	intron	2042379	2042505	.	-	.	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	CDS	2042506	2042707	1	-	0	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	exon	2042506	2042707	.	-	.	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	intron	2042708	2042830	.	-	.	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	CDS	2042831	2042978	1	-	1	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	exon	2042831	2042978	.	-	.	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	intron	2042979	2043131	.	-	.	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	CDS	2043132	2043312	1	-	2	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	exon	2043132	2043312	.	-	.	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	intron	2043313	2043402	.	-	.	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	CDS	2043403	2043661	1	-	0	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	exon	2043403	2043661	.	-	.	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	intron	2043662	2043855	.	-	.	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	CDS	2043856	2044104	0.89	-	0	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	exon	2043856	2044104	.	-	.	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
Ledus.S3	AUGUSTUS	start_codon	2044102	2044104	.	-	0	transcript_id "Ledus.S3G027700.t1"; gene_id "Ledus.S3G027700"
# This transcript jg8432.t2 is derived from g13104.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8432.t3 is derived from g13104.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8433.t1 is derived from g13105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11615876	11618038	.	+	.	Ledus.S5G121100
Ledus.S5	AUGUSTUS	transcript	11615876	11618038	.	+	.	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	start_codon	11615876	11615878	.	+	0	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	CDS	11615876	11615911	0.83	+	0	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	exon	11615876	11615911	.	+	.	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	intron	11615912	11616060	.	+	.	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	CDS	11616061	11616140	1	+	0	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	exon	11616061	11616140	.	+	.	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	intron	11616141	11616340	.	+	.	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	CDS	11616341	11616458	0.71	+	1	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	exon	11616341	11616458	.	+	.	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	intron	11616459	11616547	.	+	.	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	CDS	11616548	11616641	0.47	+	0	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	exon	11616548	11616641	.	+	.	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	intron	11616642	11616815	.	+	.	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	CDS	11616816	11617076	0.37	+	2	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	exon	11616816	11617076	.	+	.	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	intron	11617077	11617430	.	+	.	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	CDS	11617431	11618038	0.84	+	2	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	exon	11617431	11618038	.	+	.	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
Ledus.S5	AUGUSTUS	stop_codon	11618039	11618041	.	+	0	transcript_id "Ledus.S5G121100.t1"; gene_id "Ledus.S5G121100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3704.t1 is derived from g1140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11015734	11018013	.	+	.	Ledus.S1G112500
Ledus.S1	AUGUSTUS	transcript	11015734	11018013	.	+	.	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	start_codon	11015734	11015736	.	+	0	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	CDS	11015734	11015817	0.8	+	0	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	exon	11015734	11015817	.	+	.	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	intron	11015818	11016130	.	+	.	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	CDS	11016131	11016230	1	+	0	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	exon	11016131	11016230	.	+	.	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	intron	11016231	11016453	.	+	.	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	CDS	11016454	11016683	1	+	2	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	exon	11016454	11016683	.	+	.	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	intron	11016684	11016912	.	+	.	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	CDS	11016913	11017080	1	+	0	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	exon	11016913	11017080	.	+	.	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	intron	11017081	11017419	.	+	.	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	CDS	11017420	11017653	0.93	+	0	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	exon	11017420	11017653	.	+	.	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	intron	11017654	11017761	.	+	.	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	CDS	11017762	11018013	0.8	+	0	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	exon	11017762	11018013	.	+	.	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
Ledus.S1	AUGUSTUS	stop_codon	11018014	11018016	.	+	0	transcript_id "Ledus.S1G112500.t1"; gene_id "Ledus.S1G112500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5348.t1 is derived from g2787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23556948	23557492	.	-	.	Ledus.S1G276900
Ledus.S1	AUGUSTUS	transcript	23556948	23557492	.	-	.	transcript_id "Ledus.S1G276900.t1"; gene_id "Ledus.S1G276900"
Ledus.S1	AUGUSTUS	stop_codon	23556945	23556947	.	-	0	transcript_id "Ledus.S1G276900.t1"; gene_id "Ledus.S1G276900"
Ledus.S1	AUGUSTUS	CDS	23556948	23557248	0.39	-	1	transcript_id "Ledus.S1G276900.t1"; gene_id "Ledus.S1G276900"
Ledus.S1	AUGUSTUS	exon	23556948	23557248	.	-	.	transcript_id "Ledus.S1G276900.t1"; gene_id "Ledus.S1G276900"
Ledus.S1	AUGUSTUS	intron	23557249	23557340	.	-	.	transcript_id "Ledus.S1G276900.t1"; gene_id "Ledus.S1G276900"
Ledus.S1	AUGUSTUS	CDS	23557341	23557492	0.46	-	0	transcript_id "Ledus.S1G276900.t1"; gene_id "Ledus.S1G276900"
Ledus.S1	AUGUSTUS	exon	23557341	23557492	.	-	.	transcript_id "Ledus.S1G276900.t1"; gene_id "Ledus.S1G276900"
Ledus.S1	AUGUSTUS	start_codon	23557490	23557492	.	-	0	transcript_id "Ledus.S1G276900.t1"; gene_id "Ledus.S1G276900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4474.t1 is derived from g1910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17242083	17244794	.	+	.	Ledus.S1G189500
Ledus.S1	AUGUSTUS	transcript	17242083	17244794	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	start_codon	17242083	17242085	.	+	0	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	CDS	17242083	17242496	0.95	+	0	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	exon	17242083	17242496	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	intron	17242497	17242589	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	CDS	17242590	17242646	1	+	0	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	exon	17242590	17242646	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	intron	17242647	17242729	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	CDS	17242730	17242840	1	+	0	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	exon	17242730	17242840	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	intron	17242841	17242927	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	CDS	17242928	17243014	1	+	0	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	exon	17242928	17243014	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	intron	17243015	17243101	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	CDS	17243102	17243215	1	+	0	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	exon	17243102	17243215	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	intron	17243216	17243425	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	CDS	17243426	17243632	1	+	0	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	exon	17243426	17243632	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	intron	17243633	17243717	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	CDS	17243718	17243855	1	+	0	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	exon	17243718	17243855	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	intron	17243856	17243948	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	CDS	17243949	17244110	1	+	0	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	exon	17243949	17244110	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	intron	17244111	17244204	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	CDS	17244205	17244404	1	+	0	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	exon	17244205	17244404	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	intron	17244405	17244497	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	CDS	17244498	17244581	1	+	1	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	exon	17244498	17244581	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	intron	17244582	17244655	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	CDS	17244656	17244794	1	+	1	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	exon	17244656	17244794	.	+	.	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
Ledus.S1	AUGUSTUS	stop_codon	17244795	17244797	.	+	0	transcript_id "Ledus.S1G189500.t1"; gene_id "Ledus.S1G189500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4383.t1 is derived from g1819.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16742023	16745027	.	+	.	Ledus.S1G180400
Ledus.S1	AUGUSTUS	transcript	16742023	16745027	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	start_codon	16742023	16742025	.	+	0	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16742023	16742263	0.98	+	0	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16742023	16742263	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16742264	16742328	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16742329	16742438	1	+	2	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16742329	16742438	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16742439	16742552	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16742553	16742584	1	+	0	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16742553	16742584	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16742585	16742694	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16742695	16742767	1	+	1	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16742695	16742767	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16742768	16742903	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16742904	16742946	1	+	0	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16742904	16742946	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16742947	16743130	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16743131	16743872	0.98	+	2	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16743131	16743872	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16743873	16743982	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16743983	16744139	1	+	1	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16743983	16744139	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16744140	16744309	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16744310	16744659	0.98	+	0	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16744310	16744659	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16744660	16744843	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16744844	16744901	0.98	+	1	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16744844	16744901	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16744902	16745021	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16745022	16745027	0.99	+	0	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16745022	16745027	.	+	.	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	stop_codon	16745028	16745030	.	+	0	transcript_id "Ledus.S1G180400.t1"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	transcript	16742023	16744833	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	start_codon	16742023	16742025	.	+	0	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16742023	16742263	0.98	+	0	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16742023	16742263	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16742264	16742328	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16742329	16742438	1	+	2	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16742329	16742438	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16742439	16742552	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16742553	16742584	1	+	0	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16742553	16742584	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16742585	16742694	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16742695	16742767	1	+	1	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16742695	16742767	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16742768	16742903	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16742904	16742946	1	+	0	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16742904	16742946	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16742947	16743130	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16743131	16743872	0.94	+	2	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16743131	16743872	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16743873	16743982	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16743983	16744139	1	+	1	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16743983	16744139	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16744140	16744309	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16744310	16744659	0.75	+	0	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16744310	16744659	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	intron	16744660	16744829	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	CDS	16744830	16744833	0.79	+	1	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	exon	16744830	16744833	.	+	.	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
Ledus.S1	AUGUSTUS	stop_codon	16744834	16744836	.	+	0	transcript_id "Ledus.S1G180400.t2"; gene_id "Ledus.S1G180400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4084.t1 is derived from g1520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14525046	14527078	.	+	.	Ledus.S1G150500
Ledus.S1	AUGUSTUS	transcript	14525046	14527078	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	start_codon	14525046	14525048	.	+	0	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	CDS	14525046	14525148	0.57	+	0	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	exon	14525046	14525148	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	intron	14525149	14525667	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	CDS	14525668	14525706	1	+	2	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	exon	14525668	14525706	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	intron	14525707	14525864	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	CDS	14525865	14525927	1	+	2	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	exon	14525865	14525927	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	intron	14525928	14526305	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	CDS	14526306	14526324	1	+	2	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	exon	14526306	14526324	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	intron	14526325	14526414	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	CDS	14526415	14526526	1	+	1	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	exon	14526415	14526526	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	intron	14526527	14526639	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	CDS	14526640	14526687	1	+	0	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	exon	14526640	14526687	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	intron	14526688	14526823	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	CDS	14526824	14526954	1	+	0	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	exon	14526824	14526954	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	intron	14526955	14527047	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	CDS	14527048	14527078	0.98	+	1	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	exon	14527048	14527078	.	+	.	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
Ledus.S1	AUGUSTUS	stop_codon	14527079	14527081	.	+	0	transcript_id "Ledus.S1G150500.t1"; gene_id "Ledus.S1G150500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9801.t1 is derived from g10831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9941293	9943054	.	-	.	Ledus.S3G127800
Ledus.S3	AUGUSTUS	transcript	9941293	9943035	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	stop_codon	9941290	9941292	.	-	0	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9941293	9941382	0.99	-	0	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9941293	9941382	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9941383	9941473	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9941474	9941510	1	-	1	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9941474	9941510	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9941511	9941601	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9941602	9941654	1	-	0	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9941602	9941654	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9941655	9941758	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9941759	9941837	1	-	1	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9941759	9941837	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9941838	9941932	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9941933	9942005	1	-	2	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9941933	9942005	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9942006	9942095	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9942096	9942201	1	-	0	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9942096	9942201	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9942202	9942301	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9942302	9942486	1	-	2	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9942302	9942486	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9942487	9942576	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9942577	9942745	1	-	0	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9942577	9942745	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9942746	9942839	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9942840	9942884	0.99	-	0	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9942840	9942884	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9942885	9943032	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9943033	9943035	0.92	-	0	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9943033	9943035	.	-	.	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	start_codon	9943033	9943035	.	-	0	transcript_id "Ledus.S3G127800.t1"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	transcript	9941293	9943054	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	stop_codon	9941290	9941292	.	-	0	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9941293	9941382	1	-	0	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9941293	9941382	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9941383	9941473	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9941474	9941510	1	-	1	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9941474	9941510	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9941511	9941601	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9941602	9941654	1	-	0	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9941602	9941654	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9941655	9941758	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9941759	9941837	1	-	1	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9941759	9941837	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9941838	9941932	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9941933	9942005	1	-	2	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9941933	9942005	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9942006	9942095	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9942096	9942201	1	-	0	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9942096	9942201	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9942202	9942301	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9942302	9942486	1	-	2	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9942302	9942486	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9942487	9942576	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9942577	9942745	1	-	0	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9942577	9942745	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9942746	9942839	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9942840	9942884	1	-	0	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9942840	9942884	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	intron	9942885	9943006	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	CDS	9943007	9943054	0.63	-	0	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	exon	9943007	9943054	.	-	.	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
Ledus.S3	AUGUSTUS	start_codon	9943052	9943054	.	-	0	transcript_id "Ledus.S3G127800.t2"; gene_id "Ledus.S3G127800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8191.t1 is derived from g12862.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9764786	9766464	.	-	.	Ledus.S5G096900
Ledus.S5	AUGUSTUS	transcript	9764786	9766464	.	-	.	transcript_id "Ledus.S5G096900.t1"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	stop_codon	9764783	9764785	.	-	0	transcript_id "Ledus.S5G096900.t1"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	CDS	9764786	9766061	0.89	-	1	transcript_id "Ledus.S5G096900.t1"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	exon	9764786	9766061	.	-	.	transcript_id "Ledus.S5G096900.t1"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	intron	9766062	9766190	.	-	.	transcript_id "Ledus.S5G096900.t1"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	CDS	9766191	9766195	0.99	-	0	transcript_id "Ledus.S5G096900.t1"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	exon	9766191	9766195	.	-	.	transcript_id "Ledus.S5G096900.t1"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	intron	9766196	9766356	.	-	.	transcript_id "Ledus.S5G096900.t1"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	CDS	9766357	9766464	0.75	-	0	transcript_id "Ledus.S5G096900.t1"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	exon	9766357	9766464	.	-	.	transcript_id "Ledus.S5G096900.t1"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	start_codon	9766462	9766464	.	-	0	transcript_id "Ledus.S5G096900.t1"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	transcript	9764786	9766464	.	-	.	transcript_id "Ledus.S5G096900.t2"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	stop_codon	9764783	9764785	.	-	0	transcript_id "Ledus.S5G096900.t2"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	CDS	9764786	9766061	0.33	-	1	transcript_id "Ledus.S5G096900.t2"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	exon	9764786	9766061	.	-	.	transcript_id "Ledus.S5G096900.t2"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	intron	9766062	9766163	.	-	.	transcript_id "Ledus.S5G096900.t2"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	CDS	9766164	9766171	0.27	-	0	transcript_id "Ledus.S5G096900.t2"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	exon	9766164	9766171	.	-	.	transcript_id "Ledus.S5G096900.t2"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	intron	9766172	9766356	.	-	.	transcript_id "Ledus.S5G096900.t2"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	CDS	9766357	9766464	0.77	-	0	transcript_id "Ledus.S5G096900.t2"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	exon	9766357	9766464	.	-	.	transcript_id "Ledus.S5G096900.t2"; gene_id "Ledus.S5G096900"
Ledus.S5	AUGUSTUS	start_codon	9766462	9766464	.	-	0	transcript_id "Ledus.S5G096900.t2"; gene_id "Ledus.S5G096900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1734.t1 is derived from g8596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12224390	12224587	.	-	.	Ledus.S2G161600
Ledus.S2	AUGUSTUS	transcript	12224390	12224587	.	-	.	transcript_id "Ledus.S2G161600.t1"; gene_id "Ledus.S2G161600"
Ledus.S2	AUGUSTUS	stop_codon	12224387	12224389	.	-	0	transcript_id "Ledus.S2G161600.t1"; gene_id "Ledus.S2G161600"
Ledus.S2	AUGUSTUS	CDS	12224390	12224587	0.61	-	0	transcript_id "Ledus.S2G161600.t1"; gene_id "Ledus.S2G161600"
Ledus.S2	AUGUSTUS	exon	12224390	12224587	.	-	.	transcript_id "Ledus.S2G161600.t1"; gene_id "Ledus.S2G161600"
Ledus.S2	AUGUSTUS	start_codon	12224585	12224587	.	-	0	transcript_id "Ledus.S2G161600.t1"; gene_id "Ledus.S2G161600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4174.t1 is derived from g1610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15192332	15192862	.	-	.	Ledus.S1G159500
Ledus.S1	AUGUSTUS	transcript	15192332	15192862	.	-	.	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	stop_codon	15192329	15192331	.	-	0	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	CDS	15192332	15192562	1	-	0	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	exon	15192332	15192562	.	-	.	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	intron	15192563	15192638	.	-	.	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	CDS	15192639	15192680	0.8	-	0	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	exon	15192639	15192680	.	-	.	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	intron	15192681	15192757	.	-	.	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	CDS	15192758	15192766	0.99	-	0	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	exon	15192758	15192766	.	-	.	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	intron	15192767	15192850	.	-	.	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	CDS	15192851	15192862	0.65	-	0	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	exon	15192851	15192862	.	-	.	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
Ledus.S1	AUGUSTUS	start_codon	15192860	15192862	.	-	0	transcript_id "Ledus.S1G159500.t1"; gene_id "Ledus.S1G159500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8892.t1 is derived from g9922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2867462	2870490	.	-	.	Ledus.S3G036900
Ledus.S3	AUGUSTUS	transcript	2867462	2870490	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	stop_codon	2867459	2867461	.	-	0	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	CDS	2867462	2867512	1	-	0	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	exon	2867462	2867512	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	intron	2867513	2867655	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	CDS	2867656	2867901	1	-	0	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	exon	2867656	2867901	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	intron	2867902	2867977	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	CDS	2867978	2868141	1	-	2	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	exon	2867978	2868141	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	intron	2868142	2868227	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	CDS	2868228	2868291	1	-	0	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	exon	2868228	2868291	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	intron	2868292	2868406	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	CDS	2868407	2868532	0.9	-	0	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	exon	2868407	2868532	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	intron	2868533	2868618	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	CDS	2868619	2868719	1	-	2	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	exon	2868619	2868719	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	intron	2868720	2868872	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	CDS	2868873	2868880	1	-	1	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	exon	2868873	2868880	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	intron	2868881	2868974	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	CDS	2868975	2869239	0.99	-	2	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	exon	2868975	2869239	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	intron	2869240	2869340	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	CDS	2869341	2869730	0.94	-	2	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	exon	2869341	2869730	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	intron	2869731	2869848	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	CDS	2869849	2870060	1	-	1	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	exon	2869849	2870060	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	intron	2870061	2870134	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	CDS	2870135	2870490	0.87	-	0	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	exon	2870135	2870490	.	-	.	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
Ledus.S3	AUGUSTUS	start_codon	2870488	2870490	.	-	0	transcript_id "Ledus.S3G036900.t1"; gene_id "Ledus.S3G036900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9182.t1 is derived from g10212.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5267357	5267898	.	-	.	Ledus.S3G065900
Ledus.S3	AUGUSTUS	transcript	5267473	5267898	.	-	.	transcript_id "Ledus.S3G065900.t1"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	stop_codon	5267470	5267472	.	-	0	transcript_id "Ledus.S3G065900.t1"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	CDS	5267473	5267509	0.92	-	1	transcript_id "Ledus.S3G065900.t1"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	exon	5267473	5267509	.	-	.	transcript_id "Ledus.S3G065900.t1"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	intron	5267510	5267594	.	-	.	transcript_id "Ledus.S3G065900.t1"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	CDS	5267595	5267643	0.77	-	2	transcript_id "Ledus.S3G065900.t1"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	exon	5267595	5267643	.	-	.	transcript_id "Ledus.S3G065900.t1"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	intron	5267644	5267780	.	-	.	transcript_id "Ledus.S3G065900.t1"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	CDS	5267781	5267898	0.37	-	0	transcript_id "Ledus.S3G065900.t1"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	exon	5267781	5267898	.	-	.	transcript_id "Ledus.S3G065900.t1"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	start_codon	5267896	5267898	.	-	0	transcript_id "Ledus.S3G065900.t1"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	transcript	5267357	5267898	.	-	.	transcript_id "Ledus.S3G065900.t2"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	stop_codon	5267354	5267356	.	-	0	transcript_id "Ledus.S3G065900.t2"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	CDS	5267357	5267509	0.92	-	0	transcript_id "Ledus.S3G065900.t2"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	exon	5267357	5267509	.	-	.	transcript_id "Ledus.S3G065900.t2"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	intron	5267510	5267599	.	-	.	transcript_id "Ledus.S3G065900.t2"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	CDS	5267600	5267643	0.68	-	2	transcript_id "Ledus.S3G065900.t2"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	exon	5267600	5267643	.	-	.	transcript_id "Ledus.S3G065900.t2"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	intron	5267644	5267780	.	-	.	transcript_id "Ledus.S3G065900.t2"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	CDS	5267781	5267898	0.38	-	0	transcript_id "Ledus.S3G065900.t2"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	exon	5267781	5267898	.	-	.	transcript_id "Ledus.S3G065900.t2"; gene_id "Ledus.S3G065900"
Ledus.S3	AUGUSTUS	start_codon	5267896	5267898	.	-	0	transcript_id "Ledus.S3G065900.t2"; gene_id "Ledus.S3G065900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8376.t1 is derived from g13048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11353944	11355319	.	+	.	Ledus.S5G115400
Ledus.S5	AUGUSTUS	transcript	11353944	11355319	.	+	.	transcript_id "Ledus.S5G115400.t1"; gene_id "Ledus.S5G115400"
Ledus.S5	AUGUSTUS	start_codon	11353944	11353946	.	+	0	transcript_id "Ledus.S5G115400.t1"; gene_id "Ledus.S5G115400"
Ledus.S5	AUGUSTUS	CDS	11353944	11354436	1	+	0	transcript_id "Ledus.S5G115400.t1"; gene_id "Ledus.S5G115400"
Ledus.S5	AUGUSTUS	exon	11353944	11354436	.	+	.	transcript_id "Ledus.S5G115400.t1"; gene_id "Ledus.S5G115400"
Ledus.S5	AUGUSTUS	intron	11354437	11354531	.	+	.	transcript_id "Ledus.S5G115400.t1"; gene_id "Ledus.S5G115400"
Ledus.S5	AUGUSTUS	CDS	11354532	11355319	0.97	+	2	transcript_id "Ledus.S5G115400.t1"; gene_id "Ledus.S5G115400"
Ledus.S5	AUGUSTUS	exon	11354532	11355319	.	+	.	transcript_id "Ledus.S5G115400.t1"; gene_id "Ledus.S5G115400"
Ledus.S5	AUGUSTUS	stop_codon	11355320	11355322	.	+	0	transcript_id "Ledus.S5G115400.t1"; gene_id "Ledus.S5G115400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11478.t1 is derived from g5096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4666796	4669201	.	-	.	Ledus.S4G063400
Ledus.S4	AUGUSTUS	transcript	4666796	4669201	.	-	.	transcript_id "Ledus.S4G063400.t1"; gene_id "Ledus.S4G063400"
Ledus.S4	AUGUSTUS	stop_codon	4666793	4666795	.	-	0	transcript_id "Ledus.S4G063400.t1"; gene_id "Ledus.S4G063400"
Ledus.S4	AUGUSTUS	CDS	4666796	4669201	0.65	-	0	transcript_id "Ledus.S4G063400.t1"; gene_id "Ledus.S4G063400"
Ledus.S4	AUGUSTUS	exon	4666796	4669201	.	-	.	transcript_id "Ledus.S4G063400.t1"; gene_id "Ledus.S4G063400"
Ledus.S4	AUGUSTUS	start_codon	4669199	4669201	.	-	0	transcript_id "Ledus.S4G063400.t1"; gene_id "Ledus.S4G063400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9546.t1 is derived from g10576.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7733544	7739187	.	-	.	Ledus.S3G102300
Ledus.S3	AUGUSTUS	transcript	7733544	7739187	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	stop_codon	7733541	7733543	.	-	0	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	CDS	7733544	7733668	0.97	-	2	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	exon	7733544	7733668	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	intron	7733669	7733745	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	CDS	7733746	7733985	1	-	2	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	exon	7733746	7733985	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	intron	7733986	7734129	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	CDS	7734130	7734193	1	-	0	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	exon	7734130	7734193	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	intron	7734194	7734330	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	CDS	7734331	7734636	0.8	-	0	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	exon	7734331	7734636	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	intron	7734637	7734759	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	CDS	7734760	7734974	0.83	-	2	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	exon	7734760	7734974	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	intron	7734975	7735103	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	CDS	7735104	7735398	0.99	-	0	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	exon	7735104	7735398	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	intron	7735399	7735485	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	CDS	7735486	7735650	1	-	0	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	exon	7735486	7735650	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	intron	7735651	7735802	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	CDS	7735803	7736477	1	-	0	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	exon	7735803	7736477	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	intron	7736478	7736566	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	CDS	7736567	7736653	1	-	0	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	exon	7736567	7736653	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	intron	7736654	7736750	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	CDS	7736751	7737071	1	-	0	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	exon	7736751	7737071	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	intron	7737072	7737186	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	CDS	7737187	7739187	0.35	-	0	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	exon	7737187	7739187	.	-	.	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
Ledus.S3	AUGUSTUS	start_codon	7739185	7739187	.	-	0	transcript_id "Ledus.S3G102300.t1"; gene_id "Ledus.S3G102300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7280.t1 is derived from g11951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	724948	733043	.	+	.	Ledus.S5G005800
Ledus.S5	AUGUSTUS	transcript	724948	733043	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	start_codon	724948	724950	.	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	724948	725067	0.51	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	724948	725067	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	725068	725264	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	725265	725653	0.6	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	725265	725653	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	725654	725768	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	725769	725915	1	+	1	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	725769	725915	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	725916	726008	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	726009	726162	1	+	1	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	726009	726162	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	726163	726255	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	726256	726391	0.93	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	726256	726391	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	726392	726711	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	726712	726857	0.92	+	2	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	726712	726857	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	726858	727000	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	727001	727096	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	727001	727096	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	727097	727248	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	727249	727301	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	727249	727301	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	727302	727441	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	727442	727573	1	+	1	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	727442	727573	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	727574	727692	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	727693	727744	1	+	1	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	727693	727744	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	727745	727867	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	727868	727999	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	727868	727999	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	728000	728196	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	728197	728334	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	728197	728334	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	728335	728429	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	728430	728561	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	728430	728561	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	728562	728665	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	728666	728743	0.99	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	728666	728743	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	728744	728875	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	728876	729001	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	728876	729001	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	729002	729222	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	729223	729317	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	729223	729317	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	729318	729434	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	729435	729634	1	+	1	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	729435	729634	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	729635	729736	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	729737	730491	0.96	+	2	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	729737	730491	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	730492	730620	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	730621	730701	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	730621	730701	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	730702	730785	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	730786	730851	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	730786	730851	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	730852	731003	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	731004	731081	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	731004	731081	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	731082	731195	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	731196	731211	0.93	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	731196	731211	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	731212	731295	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	731296	731390	0.93	+	2	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	731296	731390	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	731391	731478	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	731479	731610	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	731479	731610	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	731611	731736	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	731737	731910	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	731737	731910	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	731911	732125	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	732126	732311	1	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	732126	732311	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	732312	732479	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	732480	732841	0.97	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	732480	732841	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	intron	732842	732931	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	CDS	732932	733043	0.94	+	1	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	exon	732932	733043	.	+	.	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
Ledus.S5	AUGUSTUS	stop_codon	733044	733046	.	+	0	transcript_id "Ledus.S5G005800.t1"; gene_id "Ledus.S5G005800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5376.t1 is derived from g2815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23916375	23916815	.	+	.	Ledus.S1G279700
Ledus.S1	AUGUSTUS	transcript	23916375	23916815	.	+	.	transcript_id "Ledus.S1G279700.t1"; gene_id "Ledus.S1G279700"
Ledus.S1	AUGUSTUS	start_codon	23916375	23916377	.	+	0	transcript_id "Ledus.S1G279700.t1"; gene_id "Ledus.S1G279700"
Ledus.S1	AUGUSTUS	CDS	23916375	23916413	0.24	+	0	transcript_id "Ledus.S1G279700.t1"; gene_id "Ledus.S1G279700"
Ledus.S1	AUGUSTUS	exon	23916375	23916413	.	+	.	transcript_id "Ledus.S1G279700.t1"; gene_id "Ledus.S1G279700"
Ledus.S1	AUGUSTUS	intron	23916414	23916521	.	+	.	transcript_id "Ledus.S1G279700.t1"; gene_id "Ledus.S1G279700"
Ledus.S1	AUGUSTUS	CDS	23916522	23916815	0.27	+	0	transcript_id "Ledus.S1G279700.t1"; gene_id "Ledus.S1G279700"
Ledus.S1	AUGUSTUS	exon	23916522	23916815	.	+	.	transcript_id "Ledus.S1G279700.t1"; gene_id "Ledus.S1G279700"
Ledus.S1	AUGUSTUS	stop_codon	23916816	23916818	.	+	0	transcript_id "Ledus.S1G279700.t1"; gene_id "Ledus.S1G279700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5692.t1 is derived from g3131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25935292	25937221	.	+	.	Ledus.S1G311300
Ledus.S1	AUGUSTUS	transcript	25935292	25937221	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	start_codon	25935292	25935294	.	+	0	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	CDS	25935292	25935402	0.44	+	0	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	exon	25935292	25935402	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	intron	25935403	25935508	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	CDS	25935509	25935639	0.99	+	0	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	exon	25935509	25935639	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	intron	25935640	25935705	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	CDS	25935706	25935763	1	+	1	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	exon	25935706	25935763	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	intron	25935764	25935907	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	CDS	25935908	25935972	1	+	0	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	exon	25935908	25935972	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	intron	25935973	25936099	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	CDS	25936100	25936135	1	+	1	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	exon	25936100	25936135	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	intron	25936136	25936746	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	CDS	25936747	25936843	1	+	1	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	exon	25936747	25936843	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	intron	25936844	25936928	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	CDS	25936929	25937026	1	+	0	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	exon	25936929	25937026	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	intron	25937027	25937109	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	CDS	25937110	25937221	0.96	+	1	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	exon	25937110	25937221	.	+	.	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
Ledus.S1	AUGUSTUS	stop_codon	25937222	25937224	.	+	0	transcript_id "Ledus.S1G311300.t1"; gene_id "Ledus.S1G311300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg357.t1 is derived from g7218.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1925764	1928126	.	+	.	Ledus.S2G023900
Ledus.S2	AUGUSTUS	transcript	1925764	1928126	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	start_codon	1925764	1925766	.	+	0	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	CDS	1925764	1925844	0.96	+	0	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	exon	1925764	1925844	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	intron	1925845	1925914	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	CDS	1925915	1926133	1	+	0	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	exon	1925915	1926133	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	intron	1926134	1926205	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	CDS	1926206	1926301	1	+	0	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	exon	1926206	1926301	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	intron	1926302	1926394	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	CDS	1926395	1926489	1	+	0	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	exon	1926395	1926489	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	intron	1926490	1926591	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	CDS	1926592	1926720	1	+	1	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	exon	1926592	1926720	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	intron	1926721	1926799	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	CDS	1926800	1926920	1	+	1	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	exon	1926800	1926920	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	intron	1926921	1927059	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	CDS	1927060	1927165	1	+	0	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	exon	1927060	1927165	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	intron	1927166	1927258	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	CDS	1927259	1927365	0.82	+	2	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	exon	1927259	1927365	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	intron	1927366	1927479	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	CDS	1927480	1927607	0.83	+	0	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	exon	1927480	1927607	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	intron	1927608	1927688	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	CDS	1927689	1927797	1	+	1	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	exon	1927689	1927797	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	intron	1927798	1927883	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	CDS	1927884	1928126	0.99	+	0	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	exon	1927884	1928126	.	+	.	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
Ledus.S2	AUGUSTUS	stop_codon	1928127	1928129	.	+	0	transcript_id "Ledus.S2G023900.t1"; gene_id "Ledus.S2G023900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8539.t1 is derived from g9569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	91564	94793	.	-	.	Ledus.S3G001600
Ledus.S3	AUGUSTUS	transcript	91564	94793	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	stop_codon	91561	91563	.	-	0	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	91564	91694	1	-	2	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	91564	91694	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	91695	91774	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	91775	91881	1	-	1	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	91775	91881	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	91882	92258	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	92259	92333	1	-	1	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	92259	92333	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	92334	92405	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	92406	92514	1	-	2	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	92406	92514	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	92515	92581	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	92582	92705	1	-	0	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	92582	92705	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	92706	92792	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	92793	92867	1	-	0	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	92793	92867	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	92868	92951	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	92952	93125	1	-	0	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	92952	93125	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	93126	93213	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	93214	93370	1	-	1	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	93214	93370	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	93371	93447	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	93448	93488	1	-	0	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	93448	93488	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	93489	93572	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	93573	93638	1	-	0	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	93573	93638	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	93639	93717	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	93718	93754	1	-	1	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	93718	93754	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	93755	93855	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	93856	93929	0.92	-	0	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	93856	93929	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	93930	94015	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	94016	94072	1	-	0	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	94016	94072	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	94073	94164	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	94165	94215	0.97	-	0	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	94165	94215	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	94216	94332	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	94333	94398	0.98	-	0	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	94333	94398	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	94399	94494	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	94495	94630	1	-	1	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	94495	94630	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	intron	94631	94719	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	CDS	94720	94793	1	-	0	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	exon	94720	94793	.	-	.	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
Ledus.S3	AUGUSTUS	start_codon	94791	94793	.	-	0	transcript_id "Ledus.S3G001600.t1"; gene_id "Ledus.S3G001600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4612.t1 is derived from g2049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18216615	18217406	.	-	.	Ledus.S1G203300
Ledus.S1	AUGUSTUS	transcript	18216615	18217406	.	-	.	transcript_id "Ledus.S1G203300.t1"; gene_id "Ledus.S1G203300"
Ledus.S1	AUGUSTUS	stop_codon	18216612	18216614	.	-	0	transcript_id "Ledus.S1G203300.t1"; gene_id "Ledus.S1G203300"
Ledus.S1	AUGUSTUS	CDS	18216615	18217406	0.96	-	0	transcript_id "Ledus.S1G203300.t1"; gene_id "Ledus.S1G203300"
Ledus.S1	AUGUSTUS	exon	18216615	18217406	.	-	.	transcript_id "Ledus.S1G203300.t1"; gene_id "Ledus.S1G203300"
Ledus.S1	AUGUSTUS	start_codon	18217404	18217406	.	-	0	transcript_id "Ledus.S1G203300.t1"; gene_id "Ledus.S1G203300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6797.t1 is derived from g4241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34254381	34257073	.	+	.	Ledus.S1G421800
Ledus.S1	AUGUSTUS	transcript	34254381	34257073	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	start_codon	34254381	34254383	.	+	0	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	CDS	34254381	34254619	0.89	+	0	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	exon	34254381	34254619	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	intron	34254620	34254781	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	CDS	34254782	34254998	1	+	1	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	exon	34254782	34254998	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	intron	34254999	34255090	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	CDS	34255091	34255612	1	+	0	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	exon	34255091	34255612	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	intron	34255613	34255713	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	CDS	34255714	34255847	1	+	0	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	exon	34255714	34255847	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	intron	34255848	34256071	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	CDS	34256072	34256191	1	+	1	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	exon	34256072	34256191	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	intron	34256192	34256300	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	CDS	34256301	34256469	1	+	1	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	exon	34256301	34256469	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	intron	34256470	34256624	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	CDS	34256625	34256693	1	+	0	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	exon	34256625	34256693	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	intron	34256694	34256785	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	CDS	34256786	34257073	0.95	+	0	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	exon	34256786	34257073	.	+	.	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
Ledus.S1	AUGUSTUS	stop_codon	34257074	34257076	.	+	0	transcript_id "Ledus.S1G421800.t1"; gene_id "Ledus.S1G421800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8052.t1 is derived from g12723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8837624	8839386	.	-	.	Ledus.S5G083000
Ledus.S5	AUGUSTUS	transcript	8837624	8839386	.	-	.	transcript_id "Ledus.S5G083000.t1"; gene_id "Ledus.S5G083000"
Ledus.S5	AUGUSTUS	stop_codon	8837621	8837623	.	-	0	transcript_id "Ledus.S5G083000.t1"; gene_id "Ledus.S5G083000"
Ledus.S5	AUGUSTUS	CDS	8837624	8838775	0.47	-	0	transcript_id "Ledus.S5G083000.t1"; gene_id "Ledus.S5G083000"
Ledus.S5	AUGUSTUS	exon	8837624	8838775	.	-	.	transcript_id "Ledus.S5G083000.t1"; gene_id "Ledus.S5G083000"
Ledus.S5	AUGUSTUS	intron	8838776	8839041	.	-	.	transcript_id "Ledus.S5G083000.t1"; gene_id "Ledus.S5G083000"
Ledus.S5	AUGUSTUS	CDS	8839042	8839386	0.69	-	0	transcript_id "Ledus.S5G083000.t1"; gene_id "Ledus.S5G083000"
Ledus.S5	AUGUSTUS	exon	8839042	8839386	.	-	.	transcript_id "Ledus.S5G083000.t1"; gene_id "Ledus.S5G083000"
Ledus.S5	AUGUSTUS	start_codon	8839384	8839386	.	-	0	transcript_id "Ledus.S5G083000.t1"; gene_id "Ledus.S5G083000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8265.t1 is derived from g12936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10318787	10323569	.	+	.	Ledus.S5G104300
Ledus.S5	AUGUSTUS	transcript	10318787	10323569	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	start_codon	10318787	10318789	.	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10318787	10319308	0.98	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10318787	10319308	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10319309	10319524	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10319525	10319707	1	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10319525	10319707	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10319708	10319834	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10319835	10319927	1	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10319835	10319927	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10319928	10320017	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10320018	10320170	0.99	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10320018	10320170	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10320171	10320272	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10320273	10320364	1	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10320273	10320364	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10320365	10320455	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10320456	10320597	1	+	1	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10320456	10320597	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10320598	10320690	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10320691	10320798	1	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10320691	10320798	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10320799	10321179	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10321180	10321265	1	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10321180	10321265	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10321266	10321365	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10321366	10321437	1	+	1	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10321366	10321437	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10321438	10321601	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10321602	10321734	1	+	1	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10321602	10321734	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10321735	10321838	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10321839	10321925	1	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10321839	10321925	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10321926	10322104	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10322105	10322197	1	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10322105	10322197	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10322198	10322338	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10322339	10322497	0.99	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10322339	10322497	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10322498	10322611	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10322612	10322695	0.98	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10322612	10322695	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10322696	10322779	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10322780	10322860	1	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10322780	10322860	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10322861	10322944	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10322945	10323027	1	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10322945	10323027	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10323028	10323111	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10323112	10323229	1	+	1	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10323112	10323229	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	intron	10323230	10323311	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	CDS	10323312	10323569	1	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	exon	10323312	10323569	.	+	.	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
Ledus.S5	AUGUSTUS	stop_codon	10323570	10323572	.	+	0	transcript_id "Ledus.S5G104300.t1"; gene_id "Ledus.S5G104300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10409.t1 is derived from g11439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14930121	14936732	.	+	.	Ledus.S3G188600
Ledus.S3	AUGUSTUS	transcript	14930121	14936732	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	start_codon	14930121	14930123	.	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14930121	14930171	1	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14930121	14930171	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14930172	14930254	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14930255	14930887	1	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14930255	14930887	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14930888	14931028	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14931029	14931315	1	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14931029	14931315	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14931316	14931408	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14931409	14931475	1	+	1	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14931409	14931475	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14931476	14931552	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14931553	14931823	0.97	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14931553	14931823	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14931824	14931896	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14931897	14932096	1	+	2	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14931897	14932096	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14932097	14932194	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14932195	14932404	1	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14932195	14932404	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14932405	14932497	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14932498	14932611	0.96	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14932498	14932611	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14932612	14932712	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14932713	14932823	1	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14932713	14932823	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14932824	14932914	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14932915	14933079	1	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14932915	14933079	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14933080	14933164	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14933165	14933350	1	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14933165	14933350	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14933351	14933446	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14933447	14933575	0.98	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14933447	14933575	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14933576	14933680	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14933681	14933814	0.98	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14933681	14933814	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14933815	14933891	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14933892	14934044	0.75	+	1	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14933892	14934044	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14934045	14934159	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14934160	14934367	0.76	+	1	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14934160	14934367	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14934368	14934455	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14934456	14934622	0.64	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14934456	14934622	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14934623	14934715	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14934716	14934800	0.65	+	1	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14934716	14934800	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14934801	14934907	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14934908	14935327	0.87	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14934908	14935327	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14935328	14935436	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14935437	14935581	0.93	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14935437	14935581	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14935582	14935681	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14935682	14935743	1	+	2	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14935682	14935743	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14935744	14935833	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14935834	14935924	1	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14935834	14935924	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	intron	14935925	14936007	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	CDS	14936008	14936732	0.99	+	2	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	exon	14936008	14936732	.	+	.	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
Ledus.S3	AUGUSTUS	stop_codon	14936733	14936735	.	+	0	transcript_id "Ledus.S3G188600.t1"; gene_id "Ledus.S3G188600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1111.t1 is derived from g7972.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7593671	7594509	.	-	.	Ledus.S2G099300
Ledus.S2	AUGUSTUS	transcript	7593671	7594509	.	-	.	transcript_id "Ledus.S2G099300.t1"; gene_id "Ledus.S2G099300"
Ledus.S2	AUGUSTUS	stop_codon	7593668	7593670	.	-	0	transcript_id "Ledus.S2G099300.t1"; gene_id "Ledus.S2G099300"
Ledus.S2	AUGUSTUS	CDS	7593671	7593707	0.99	-	1	transcript_id "Ledus.S2G099300.t1"; gene_id "Ledus.S2G099300"
Ledus.S2	AUGUSTUS	exon	7593671	7593707	.	-	.	transcript_id "Ledus.S2G099300.t1"; gene_id "Ledus.S2G099300"
Ledus.S2	AUGUSTUS	intron	7593708	7593808	.	-	.	transcript_id "Ledus.S2G099300.t1"; gene_id "Ledus.S2G099300"
Ledus.S2	AUGUSTUS	CDS	7593809	7594509	0.84	-	0	transcript_id "Ledus.S2G099300.t1"; gene_id "Ledus.S2G099300"
Ledus.S2	AUGUSTUS	exon	7593809	7594509	.	-	.	transcript_id "Ledus.S2G099300.t1"; gene_id "Ledus.S2G099300"
Ledus.S2	AUGUSTUS	start_codon	7594507	7594509	.	-	0	transcript_id "Ledus.S2G099300.t1"; gene_id "Ledus.S2G099300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8712.t1 is derived from g9742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1553553	1556219	.	-	.	Ledus.S3G018900
Ledus.S3	AUGUSTUS	transcript	1553553	1556219	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	stop_codon	1553550	1553552	.	-	0	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	CDS	1553553	1553699	0.78	-	0	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	exon	1553553	1553699	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	intron	1553700	1553805	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	CDS	1553806	1553923	0.84	-	1	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	exon	1553806	1553923	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	intron	1553924	1554012	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	CDS	1554013	1554311	1	-	0	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	exon	1554013	1554311	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	intron	1554312	1554390	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	CDS	1554391	1554478	1	-	1	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	exon	1554391	1554478	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	intron	1554479	1554570	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	CDS	1554571	1554665	1	-	0	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	exon	1554571	1554665	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	intron	1554666	1554764	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	CDS	1554765	1554926	1	-	0	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	exon	1554765	1554926	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	intron	1554927	1555010	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	CDS	1555011	1555082	1	-	0	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	exon	1555011	1555082	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	intron	1555083	1555166	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	CDS	1555167	1555294	1	-	2	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	exon	1555167	1555294	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	intron	1555295	1555392	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	CDS	1555393	1555508	1	-	1	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	exon	1555393	1555508	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	intron	1555509	1555594	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	CDS	1555595	1555704	1	-	0	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	exon	1555595	1555704	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	intron	1555705	1555798	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	CDS	1555799	1555940	1	-	1	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	exon	1555799	1555940	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	intron	1555941	1556076	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	CDS	1556077	1556219	0.9	-	0	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	exon	1556077	1556219	.	-	.	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
Ledus.S3	AUGUSTUS	start_codon	1556217	1556219	.	-	0	transcript_id "Ledus.S3G018900.t1"; gene_id "Ledus.S3G018900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg537.t1 is derived from g7398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3100257	3100709	.	-	.	Ledus.S2G041900
Ledus.S2	AUGUSTUS	transcript	3100257	3100709	.	-	.	transcript_id "Ledus.S2G041900.t1"; gene_id "Ledus.S2G041900"
Ledus.S2	AUGUSTUS	stop_codon	3100254	3100256	.	-	0	transcript_id "Ledus.S2G041900.t1"; gene_id "Ledus.S2G041900"
Ledus.S2	AUGUSTUS	CDS	3100257	3100709	0.58	-	0	transcript_id "Ledus.S2G041900.t1"; gene_id "Ledus.S2G041900"
Ledus.S2	AUGUSTUS	exon	3100257	3100709	.	-	.	transcript_id "Ledus.S2G041900.t1"; gene_id "Ledus.S2G041900"
Ledus.S2	AUGUSTUS	start_codon	3100707	3100709	.	-	0	transcript_id "Ledus.S2G041900.t1"; gene_id "Ledus.S2G041900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5705.t1 is derived from g3144.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26051735	26056541	.	-	.	Ledus.S1G312600
Ledus.S1	AUGUSTUS	transcript	26051735	26056541	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	stop_codon	26051732	26051734	.	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26051735	26051845	1	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26051735	26051845	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26051846	26051916	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26051917	26051997	1	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26051917	26051997	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26051998	26052089	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26052090	26052335	0.93	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26052090	26052335	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26052336	26052462	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26052463	26052534	1	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26052463	26052534	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26052535	26052613	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26052614	26052682	1	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26052614	26052682	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26052683	26052913	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26052914	26053057	0.84	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26052914	26053057	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26053058	26053194	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26053195	26053350	0.99	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26053195	26053350	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26053351	26053420	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26053421	26053486	1	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26053421	26053486	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26053487	26053633	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26053634	26053702	0.7	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26053634	26053702	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26053703	26053821	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26053822	26053941	0.68	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26053822	26053941	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26053942	26054047	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26054048	26054120	0.78	-	1	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26054048	26054120	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26054121	26054263	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26054264	26054362	1	-	1	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26054264	26054362	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26054363	26054546	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26054547	26054668	0.72	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26054547	26054668	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26054669	26054895	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26054896	26055036	0.6	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26054896	26055036	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26055037	26055603	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26055604	26055692	0.68	-	2	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26055604	26055692	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26055693	26055801	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26055802	26055949	1	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26055802	26055949	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26055950	26056100	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26056101	26056541	0.51	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26056101	26056541	.	-	.	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	start_codon	26056539	26056541	.	-	0	transcript_id "Ledus.S1G312600.t1"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	transcript	26051735	26056541	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	stop_codon	26051732	26051734	.	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26051735	26051845	0.99	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26051735	26051845	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26051846	26051916	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26051917	26051997	1	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26051917	26051997	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26051998	26052089	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26052090	26052335	0.97	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26052090	26052335	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26052336	26052462	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26052463	26052543	1	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26052463	26052543	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26052544	26052613	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26052614	26052682	1	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26052614	26052682	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26052683	26052913	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26052914	26053057	0.66	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26052914	26053057	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26053058	26053194	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26053195	26053350	0.99	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26053195	26053350	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26053351	26053420	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26053421	26053486	1	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26053421	26053486	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26053487	26053633	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26053634	26053702	0.62	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26053634	26053702	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26053703	26053821	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26053822	26053941	0.66	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26053822	26053941	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26053942	26054047	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26054048	26054120	0.72	-	1	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26054048	26054120	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26054121	26054263	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26054264	26054362	1	-	1	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26054264	26054362	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26054363	26054546	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26054547	26054668	0.65	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26054547	26054668	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26054669	26054895	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26054896	26055036	0.58	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26054896	26055036	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26055037	26055603	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26055604	26055692	0.72	-	2	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26055604	26055692	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26055693	26055801	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26055802	26055949	0.99	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26055802	26055949	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	intron	26055950	26056100	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	CDS	26056101	26056541	0.53	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	exon	26056101	26056541	.	-	.	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
Ledus.S1	AUGUSTUS	start_codon	26056539	26056541	.	-	0	transcript_id "Ledus.S1G312600.t2"; gene_id "Ledus.S1G312600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11374.t1 is derived from g4992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3878132	3878440	.	-	.	Ledus.S4G053000
Ledus.S4	AUGUSTUS	transcript	3878132	3878440	.	-	.	transcript_id "Ledus.S4G053000.t1"; gene_id "Ledus.S4G053000"
Ledus.S4	AUGUSTUS	stop_codon	3878129	3878131	.	-	0	transcript_id "Ledus.S4G053000.t1"; gene_id "Ledus.S4G053000"
Ledus.S4	AUGUSTUS	CDS	3878132	3878440	1	-	0	transcript_id "Ledus.S4G053000.t1"; gene_id "Ledus.S4G053000"
Ledus.S4	AUGUSTUS	exon	3878132	3878440	.	-	.	transcript_id "Ledus.S4G053000.t1"; gene_id "Ledus.S4G053000"
Ledus.S4	AUGUSTUS	start_codon	3878438	3878440	.	-	0	transcript_id "Ledus.S4G053000.t1"; gene_id "Ledus.S4G053000"
# This transcript jg7450.t2 is derived from g12121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7451.t1 is derived from g12122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2788550	2790772	.	+	.	Ledus.S5G022900
Ledus.S5	AUGUSTUS	transcript	2788550	2790772	.	+	.	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	start_codon	2788550	2788552	.	+	0	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	CDS	2788550	2788686	0.98	+	0	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	exon	2788550	2788686	.	+	.	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	intron	2788687	2789094	.	+	.	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	CDS	2789095	2789357	0.64	+	1	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	exon	2789095	2789357	.	+	.	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	intron	2789358	2789589	.	+	.	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	CDS	2789590	2789695	0.69	+	2	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	exon	2789590	2789695	.	+	.	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	intron	2789696	2789805	.	+	.	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	CDS	2789806	2789886	0.52	+	1	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	exon	2789806	2789886	.	+	.	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	intron	2789887	2790012	.	+	.	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	CDS	2790013	2790772	0.49	+	1	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	exon	2790013	2790772	.	+	.	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
Ledus.S5	AUGUSTUS	stop_codon	2790773	2790775	.	+	0	transcript_id "Ledus.S5G022900.t1"; gene_id "Ledus.S5G022900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8019.t1 is derived from g12690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8523279	8525305	.	-	.	Ledus.S5G079700
Ledus.S5	AUGUSTUS	transcript	8523279	8525305	.	-	.	transcript_id "Ledus.S5G079700.t1"; gene_id "Ledus.S5G079700"
Ledus.S5	AUGUSTUS	stop_codon	8523276	8523278	.	-	0	transcript_id "Ledus.S5G079700.t1"; gene_id "Ledus.S5G079700"
Ledus.S5	AUGUSTUS	CDS	8523279	8524931	1	-	0	transcript_id "Ledus.S5G079700.t1"; gene_id "Ledus.S5G079700"
Ledus.S5	AUGUSTUS	exon	8523279	8524931	.	-	.	transcript_id "Ledus.S5G079700.t1"; gene_id "Ledus.S5G079700"
Ledus.S5	AUGUSTUS	intron	8524932	8525072	.	-	.	transcript_id "Ledus.S5G079700.t1"; gene_id "Ledus.S5G079700"
Ledus.S5	AUGUSTUS	CDS	8525073	8525186	1	-	0	transcript_id "Ledus.S5G079700.t1"; gene_id "Ledus.S5G079700"
Ledus.S5	AUGUSTUS	exon	8525073	8525186	.	-	.	transcript_id "Ledus.S5G079700.t1"; gene_id "Ledus.S5G079700"
Ledus.S5	AUGUSTUS	intron	8525187	8525275	.	-	.	transcript_id "Ledus.S5G079700.t1"; gene_id "Ledus.S5G079700"
Ledus.S5	AUGUSTUS	CDS	8525276	8525305	0.63	-	0	transcript_id "Ledus.S5G079700.t1"; gene_id "Ledus.S5G079700"
Ledus.S5	AUGUSTUS	exon	8525276	8525305	.	-	.	transcript_id "Ledus.S5G079700.t1"; gene_id "Ledus.S5G079700"
Ledus.S5	AUGUSTUS	start_codon	8525303	8525305	.	-	0	transcript_id "Ledus.S5G079700.t1"; gene_id "Ledus.S5G079700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg336.t1 is derived from g7197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1803096	1808419	.	-	.	Ledus.S2G021800
Ledus.S2	AUGUSTUS	transcript	1803096	1808419	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	stop_codon	1803093	1803095	.	-	0	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1803096	1804318	0.52	-	2	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1803096	1804318	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1804319	1804432	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1804433	1804751	0.87	-	0	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1804433	1804751	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1804752	1805378	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1805379	1805450	0.9	-	0	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1805379	1805450	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1805451	1805547	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1805548	1805634	1	-	0	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1805548	1805634	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1805635	1805709	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1805710	1805764	1	-	1	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1805710	1805764	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1805765	1806022	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1806023	1806130	1	-	1	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1806023	1806130	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1806131	1806212	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1806213	1806317	0.99	-	1	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1806213	1806317	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1806318	1806433	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1806434	1806511	1	-	1	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1806434	1806511	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1806512	1806618	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1806619	1806659	0.94	-	0	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1806619	1806659	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1806660	1806764	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1806765	1806797	1	-	0	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1806765	1806797	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1806798	1806907	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1806908	1806976	0.98	-	0	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1806908	1806976	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1806977	1807076	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1807077	1807151	0.74	-	0	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1807077	1807151	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1807152	1807234	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1807235	1807307	0.99	-	1	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1807235	1807307	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1807308	1807415	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1807416	1807463	1	-	1	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1807416	1807463	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1807464	1807561	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1807562	1807659	1	-	0	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1807562	1807659	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1807660	1807746	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1807747	1807814	1	-	2	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1807747	1807814	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	intron	1807815	1807935	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	CDS	1807936	1808419	0.78	-	0	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	exon	1807936	1808419	.	-	.	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
Ledus.S2	AUGUSTUS	start_codon	1808417	1808419	.	-	0	transcript_id "Ledus.S2G021800.t1"; gene_id "Ledus.S2G021800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2374.t1 is derived from g9237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17713446	17715695	.	-	.	Ledus.S2G225600
Ledus.S2	AUGUSTUS	transcript	17713446	17715695	.	-	.	transcript_id "Ledus.S2G225600.t1"; gene_id "Ledus.S2G225600"
Ledus.S2	AUGUSTUS	stop_codon	17713443	17713445	.	-	0	transcript_id "Ledus.S2G225600.t1"; gene_id "Ledus.S2G225600"
Ledus.S2	AUGUSTUS	CDS	17713446	17715695	0.98	-	0	transcript_id "Ledus.S2G225600.t1"; gene_id "Ledus.S2G225600"
Ledus.S2	AUGUSTUS	exon	17713446	17715695	.	-	.	transcript_id "Ledus.S2G225600.t1"; gene_id "Ledus.S2G225600"
Ledus.S2	AUGUSTUS	start_codon	17715693	17715695	.	-	0	transcript_id "Ledus.S2G225600.t1"; gene_id "Ledus.S2G225600"
# This transcript jg7463.t2 is derived from g12134.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7463.t3 is derived from g12134.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7464.t1 is derived from g12135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2946592	2949861	.	+	.	Ledus.S5G024200
Ledus.S5	AUGUSTUS	transcript	2946592	2949861	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	start_codon	2946592	2946594	.	+	0	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2946592	2946688	0.98	+	0	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2946592	2946688	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2946689	2947128	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2947129	2947226	1	+	2	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2947129	2947226	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2947227	2947324	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2947325	2947501	1	+	0	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2947325	2947501	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2947502	2947755	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2947756	2947856	1	+	0	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2947756	2947856	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2947857	2947989	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2947990	2948065	1	+	1	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2947990	2948065	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2948066	2948150	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2948151	2948210	1	+	0	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2948151	2948210	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2948211	2948287	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2948288	2948472	1	+	0	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2948288	2948472	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2948473	2948558	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2948559	2948655	1	+	1	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2948559	2948655	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2948656	2948735	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2948736	2948822	1	+	0	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2948736	2948822	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2948823	2948911	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2948912	2948970	0.95	+	0	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2948912	2948970	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2948971	2949071	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2949072	2949163	0.9	+	1	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2949072	2949163	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2949164	2949240	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2949241	2949318	1	+	2	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2949241	2949318	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2949319	2949400	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2949401	2949561	1	+	2	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2949401	2949561	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	intron	2949562	2949654	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	CDS	2949655	2949861	0.97	+	0	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	exon	2949655	2949861	.	+	.	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
Ledus.S5	AUGUSTUS	stop_codon	2949862	2949864	.	+	0	transcript_id "Ledus.S5G024200.t1"; gene_id "Ledus.S5G024200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12158.t1 is derived from g5777.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10038076	10041717	.	+	.	Ledus.S4G131400
Ledus.S4	AUGUSTUS	transcript	10038076	10041717	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	start_codon	10038076	10038078	.	+	0	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10038076	10038237	0.83	+	0	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10038076	10038237	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10038238	10038463	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10038464	10038611	1	+	0	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10038464	10038611	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10038612	10038705	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10038706	10038818	0.95	+	2	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10038706	10038818	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10038819	10038935	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10038936	10039006	0.94	+	0	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10038936	10039006	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10039007	10039144	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10039145	10039236	1	+	1	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10039145	10039236	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10039237	10039330	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10039331	10039418	1	+	2	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10039331	10039418	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10039419	10039519	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10039520	10039631	1	+	1	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10039520	10039631	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10039632	10039712	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10039713	10039809	1	+	0	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10039713	10039809	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10039810	10039982	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10039983	10040064	1	+	2	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10039983	10040064	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10040065	10040163	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10040164	10040281	0.98	+	1	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10040164	10040281	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10040282	10040396	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10040397	10040504	0.9	+	0	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10040397	10040504	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10040505	10040622	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10040623	10040725	1	+	0	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10040623	10040725	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10040726	10040848	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10040849	10040955	0.88	+	2	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10040849	10040955	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10040956	10041126	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10041127	10041141	0.56	+	0	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10041127	10041141	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	intron	10041142	10041567	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	CDS	10041568	10041717	0.89	+	0	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	exon	10041568	10041717	.	+	.	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
Ledus.S4	AUGUSTUS	stop_codon	10041718	10041720	.	+	0	transcript_id "Ledus.S4G131400.t1"; gene_id "Ledus.S4G131400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11454.t1 is derived from g5072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4397985	4398624	.	-	.	Ledus.S4G061000
Ledus.S4	AUGUSTUS	transcript	4397985	4398624	.	-	.	transcript_id "Ledus.S4G061000.t1"; gene_id "Ledus.S4G061000"
Ledus.S4	AUGUSTUS	stop_codon	4397982	4397984	.	-	0	transcript_id "Ledus.S4G061000.t1"; gene_id "Ledus.S4G061000"
Ledus.S4	AUGUSTUS	CDS	4397985	4398196	1	-	2	transcript_id "Ledus.S4G061000.t1"; gene_id "Ledus.S4G061000"
Ledus.S4	AUGUSTUS	exon	4397985	4398196	.	-	.	transcript_id "Ledus.S4G061000.t1"; gene_id "Ledus.S4G061000"
Ledus.S4	AUGUSTUS	intron	4398197	4398281	.	-	.	transcript_id "Ledus.S4G061000.t1"; gene_id "Ledus.S4G061000"
Ledus.S4	AUGUSTUS	CDS	4398282	4398624	0.64	-	0	transcript_id "Ledus.S4G061000.t1"; gene_id "Ledus.S4G061000"
Ledus.S4	AUGUSTUS	exon	4398282	4398624	.	-	.	transcript_id "Ledus.S4G061000.t1"; gene_id "Ledus.S4G061000"
Ledus.S4	AUGUSTUS	start_codon	4398622	4398624	.	-	0	transcript_id "Ledus.S4G061000.t1"; gene_id "Ledus.S4G061000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6816.t1 is derived from g4260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34421320	34423900	.	+	.	Ledus.S1G423700
Ledus.S1	AUGUSTUS	transcript	34421320	34423900	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	start_codon	34421320	34421322	.	+	0	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	CDS	34421320	34421328	0.3	+	0	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	exon	34421320	34421328	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	intron	34421329	34421457	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	CDS	34421458	34421492	0.96	+	0	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	exon	34421458	34421492	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	intron	34421493	34421652	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	CDS	34421653	34421717	0.94	+	1	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	exon	34421653	34421717	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	intron	34421718	34421780	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	CDS	34421781	34422079	0.94	+	2	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	exon	34421781	34422079	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	intron	34422080	34422203	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	CDS	34422204	34422245	1	+	0	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	exon	34422204	34422245	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	intron	34422246	34422394	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	CDS	34422395	34422571	0.98	+	0	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	exon	34422395	34422571	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	intron	34422572	34422684	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	CDS	34422685	34422835	0.99	+	0	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	exon	34422685	34422835	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	intron	34422836	34422916	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	CDS	34422917	34423003	1	+	2	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	exon	34422917	34423003	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	intron	34423004	34423225	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	CDS	34423226	34423350	1	+	2	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	exon	34423226	34423350	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	intron	34423351	34423528	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	CDS	34423529	34423647	1	+	0	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	exon	34423529	34423647	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	intron	34423648	34423779	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	CDS	34423780	34423900	0.9	+	1	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	exon	34423780	34423900	.	+	.	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
Ledus.S1	AUGUSTUS	stop_codon	34423901	34423903	.	+	0	transcript_id "Ledus.S1G423700.t1"; gene_id "Ledus.S1G423700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3283.t1 is derived from g718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7240886	7241293	.	-	.	Ledus.S1G070400
Ledus.S1	AUGUSTUS	transcript	7240886	7241293	.	-	.	transcript_id "Ledus.S1G070400.t1"; gene_id "Ledus.S1G070400"
Ledus.S1	AUGUSTUS	stop_codon	7240883	7240885	.	-	0	transcript_id "Ledus.S1G070400.t1"; gene_id "Ledus.S1G070400"
Ledus.S1	AUGUSTUS	CDS	7240886	7240971	0.83	-	2	transcript_id "Ledus.S1G070400.t1"; gene_id "Ledus.S1G070400"
Ledus.S1	AUGUSTUS	exon	7240886	7240971	.	-	.	transcript_id "Ledus.S1G070400.t1"; gene_id "Ledus.S1G070400"
Ledus.S1	AUGUSTUS	intron	7240972	7241157	.	-	.	transcript_id "Ledus.S1G070400.t1"; gene_id "Ledus.S1G070400"
Ledus.S1	AUGUSTUS	CDS	7241158	7241293	0.56	-	0	transcript_id "Ledus.S1G070400.t1"; gene_id "Ledus.S1G070400"
Ledus.S1	AUGUSTUS	exon	7241158	7241293	.	-	.	transcript_id "Ledus.S1G070400.t1"; gene_id "Ledus.S1G070400"
Ledus.S1	AUGUSTUS	start_codon	7241291	7241293	.	-	0	transcript_id "Ledus.S1G070400.t1"; gene_id "Ledus.S1G070400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3508.t1 is derived from g943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8966474	8968807	.	+	.	Ledus.S1G092900
Ledus.S1	AUGUSTUS	transcript	8966474	8968807	.	+	.	transcript_id "Ledus.S1G092900.t1"; gene_id "Ledus.S1G092900"
Ledus.S1	AUGUSTUS	start_codon	8966474	8966476	.	+	0	transcript_id "Ledus.S1G092900.t1"; gene_id "Ledus.S1G092900"
Ledus.S1	AUGUSTUS	CDS	8966474	8968807	0.98	+	0	transcript_id "Ledus.S1G092900.t1"; gene_id "Ledus.S1G092900"
Ledus.S1	AUGUSTUS	exon	8966474	8968807	.	+	.	transcript_id "Ledus.S1G092900.t1"; gene_id "Ledus.S1G092900"
Ledus.S1	AUGUSTUS	stop_codon	8968808	8968810	.	+	0	transcript_id "Ledus.S1G092900.t1"; gene_id "Ledus.S1G092900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12808.t1 is derived from g6430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14884336	14893131	.	-	.	Ledus.S4G196400
Ledus.S4	AUGUSTUS	transcript	14884336	14893131	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	stop_codon	14884333	14884335	.	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14884336	14884361	0.53	-	2	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14884336	14884361	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14884362	14884549	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14884550	14884700	0.77	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14884550	14884700	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14884701	14884785	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14884786	14885189	0.44	-	2	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14884786	14885189	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14885190	14885276	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14885277	14885601	0.37	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14885277	14885601	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14885602	14886514	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14886515	14886676	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14886515	14886676	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14886677	14886805	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14886806	14886947	1	-	1	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14886806	14886947	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14886948	14887023	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14887024	14887260	1	-	1	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14887024	14887260	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14887261	14887419	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14887420	14887539	1	-	1	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14887420	14887539	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14887540	14887656	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14887657	14887754	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14887657	14887754	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14887755	14887838	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14887839	14887870	1	-	2	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14887839	14887870	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14887871	14887968	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14887969	14888068	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14887969	14888068	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14888069	14888219	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14888220	14888291	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14888220	14888291	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14888292	14888420	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14888421	14888501	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14888421	14888501	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14888502	14888647	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14888648	14888764	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14888648	14888764	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14888765	14888882	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14888883	14888996	0.92	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14888883	14888996	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14888997	14889119	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14889120	14889218	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14889120	14889218	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14889219	14889293	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14889294	14889400	1	-	2	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14889294	14889400	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14889401	14889485	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14889486	14889684	0.86	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14889486	14889684	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14889685	14889801	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14889802	14889888	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14889802	14889888	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14889889	14889979	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14889980	14890093	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14889980	14890093	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14890094	14890235	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14890236	14890349	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14890236	14890349	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14890350	14890449	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14890450	14890553	0.62	-	2	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14890450	14890553	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14890554	14890648	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14890649	14890685	0.99	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14890649	14890685	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14890686	14890782	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14890783	14890904	1	-	2	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14890783	14890904	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14890905	14890982	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14890983	14891170	0.99	-	1	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14890983	14891170	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14891171	14891585	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14891586	14891857	0.98	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14891586	14891857	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14891858	14892112	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14892113	14892265	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14892113	14892265	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14892266	14892542	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14892543	14892689	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14892543	14892689	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	intron	14892690	14893005	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	CDS	14893006	14893131	1	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	exon	14893006	14893131	.	-	.	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
Ledus.S4	AUGUSTUS	start_codon	14893129	14893131	.	-	0	transcript_id "Ledus.S4G196400.t1"; gene_id "Ledus.S4G196400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10110.t1 is derived from g11140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12877464	12879032	.	-	.	Ledus.S3G158700
Ledus.S3	AUGUSTUS	transcript	12877464	12879032	.	-	.	transcript_id "Ledus.S3G158700.t1"; gene_id "Ledus.S3G158700"
Ledus.S3	AUGUSTUS	stop_codon	12877461	12877463	.	-	0	transcript_id "Ledus.S3G158700.t1"; gene_id "Ledus.S3G158700"
Ledus.S3	AUGUSTUS	CDS	12877464	12879032	0.98	-	0	transcript_id "Ledus.S3G158700.t1"; gene_id "Ledus.S3G158700"
Ledus.S3	AUGUSTUS	exon	12877464	12879032	.	-	.	transcript_id "Ledus.S3G158700.t1"; gene_id "Ledus.S3G158700"
Ledus.S3	AUGUSTUS	start_codon	12879030	12879032	.	-	0	transcript_id "Ledus.S3G158700.t1"; gene_id "Ledus.S3G158700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9678.t1 is derived from g10708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8984942	8986573	.	-	.	Ledus.S3G115500
Ledus.S3	AUGUSTUS	transcript	8984942	8986573	.	-	.	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	stop_codon	8984939	8984941	.	-	0	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	CDS	8984942	8985103	1	-	0	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	exon	8984942	8985103	.	-	.	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	intron	8985104	8985438	.	-	.	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	CDS	8985439	8985876	1	-	0	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	exon	8985439	8985876	.	-	.	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	intron	8985877	8985963	.	-	.	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	CDS	8985964	8986121	1	-	2	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	exon	8985964	8986121	.	-	.	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	intron	8986122	8986250	.	-	.	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	CDS	8986251	8986326	1	-	0	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	exon	8986251	8986326	.	-	.	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	intron	8986327	8986435	.	-	.	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	CDS	8986436	8986573	0.89	-	0	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	exon	8986436	8986573	.	-	.	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	start_codon	8986571	8986573	.	-	0	transcript_id "Ledus.S3G115500.t1"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	transcript	8985096	8986573	.	-	.	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	stop_codon	8985093	8985095	.	-	0	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	CDS	8985096	8985103	0.97	-	2	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	exon	8985096	8985103	.	-	.	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	intron	8985104	8985385	.	-	.	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	CDS	8985386	8985433	0.84	-	2	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	exon	8985386	8985433	.	-	.	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	intron	8985434	8985512	.	-	.	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	CDS	8985513	8985876	0.99	-	0	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	exon	8985513	8985876	.	-	.	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	intron	8985877	8985963	.	-	.	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	CDS	8985964	8986121	1	-	2	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	exon	8985964	8986121	.	-	.	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	intron	8986122	8986250	.	-	.	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	CDS	8986251	8986326	1	-	0	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	exon	8986251	8986326	.	-	.	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	intron	8986327	8986435	.	-	.	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	CDS	8986436	8986573	0.94	-	0	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	exon	8986436	8986573	.	-	.	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
Ledus.S3	AUGUSTUS	start_codon	8986571	8986573	.	-	0	transcript_id "Ledus.S3G115500.t2"; gene_id "Ledus.S3G115500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5822.t1 is derived from g3264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27100432	27101400	.	-	.	Ledus.S1G324300
Ledus.S1	AUGUSTUS	transcript	27100432	27101400	.	-	.	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	stop_codon	27100429	27100431	.	-	0	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	CDS	27100432	27100433	1	-	2	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	exon	27100432	27100433	.	-	.	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	intron	27100434	27100659	.	-	.	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	CDS	27100660	27100727	1	-	1	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	exon	27100660	27100727	.	-	.	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	intron	27100728	27100812	.	-	.	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	CDS	27100813	27100966	0.98	-	2	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	exon	27100813	27100966	.	-	.	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	intron	27100967	27101064	.	-	.	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	CDS	27101065	27101077	0.36	-	0	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	exon	27101065	27101077	.	-	.	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	intron	27101078	27101205	.	-	.	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	CDS	27101206	27101400	0.23	-	0	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	exon	27101206	27101400	.	-	.	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
Ledus.S1	AUGUSTUS	start_codon	27101398	27101400	.	-	0	transcript_id "Ledus.S1G324300.t1"; gene_id "Ledus.S1G324300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg736.t1 is derived from g7597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4680483	4681524	.	-	.	Ledus.S2G061800
Ledus.S2	AUGUSTUS	transcript	4680483	4681524	.	-	.	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	stop_codon	4680480	4680482	.	-	0	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	CDS	4680483	4680663	0.81	-	1	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	exon	4680483	4680663	.	-	.	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	intron	4680664	4680792	.	-	.	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	CDS	4680793	4680906	0.98	-	1	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	exon	4680793	4680906	.	-	.	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	intron	4680907	4680984	.	-	.	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	CDS	4680985	4681099	0.44	-	2	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	exon	4680985	4681099	.	-	.	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	intron	4681100	4681291	.	-	.	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	CDS	4681292	4681392	0.9	-	1	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	exon	4681292	4681392	.	-	.	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	intron	4681393	4681489	.	-	.	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	CDS	4681490	4681524	0.7	-	0	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	exon	4681490	4681524	.	-	.	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
Ledus.S2	AUGUSTUS	start_codon	4681522	4681524	.	-	0	transcript_id "Ledus.S2G061800.t1"; gene_id "Ledus.S2G061800"
# This transcript jg6421.t2 is derived from g3864.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6422.t1 is derived from g3865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31165306	31167192	.	-	.	Ledus.S1G384300
Ledus.S1	AUGUSTUS	transcript	31165306	31167192	.	-	.	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	stop_codon	31165303	31165305	.	-	0	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	CDS	31165306	31165500	0.93	-	0	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	exon	31165306	31165500	.	-	.	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	intron	31165501	31165648	.	-	.	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	CDS	31165649	31165714	1	-	0	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	exon	31165649	31165714	.	-	.	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	intron	31165715	31165845	.	-	.	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	CDS	31165846	31165905	1	-	0	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	exon	31165846	31165905	.	-	.	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	intron	31165906	31166014	.	-	.	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	CDS	31166015	31166130	1	-	2	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	exon	31166015	31166130	.	-	.	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	intron	31166131	31166367	.	-	.	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	CDS	31166368	31166458	1	-	0	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	exon	31166368	31166458	.	-	.	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	intron	31166459	31167135	.	-	.	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	CDS	31167136	31167192	0.99	-	0	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	exon	31167136	31167192	.	-	.	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
Ledus.S1	AUGUSTUS	start_codon	31167190	31167192	.	-	0	transcript_id "Ledus.S1G384300.t1"; gene_id "Ledus.S1G384300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2380.t1 is derived from g9243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17820954	17821814	.	+	.	Ledus.S2G226200
Ledus.S2	AUGUSTUS	transcript	17820954	17821814	.	+	.	transcript_id "Ledus.S2G226200.t1"; gene_id "Ledus.S2G226200"
Ledus.S2	AUGUSTUS	start_codon	17820954	17820956	.	+	0	transcript_id "Ledus.S2G226200.t1"; gene_id "Ledus.S2G226200"
Ledus.S2	AUGUSTUS	CDS	17820954	17821127	1	+	0	transcript_id "Ledus.S2G226200.t1"; gene_id "Ledus.S2G226200"
Ledus.S2	AUGUSTUS	exon	17820954	17821127	.	+	.	transcript_id "Ledus.S2G226200.t1"; gene_id "Ledus.S2G226200"
Ledus.S2	AUGUSTUS	intron	17821128	17821273	.	+	.	transcript_id "Ledus.S2G226200.t1"; gene_id "Ledus.S2G226200"
Ledus.S2	AUGUSTUS	CDS	17821274	17821427	0.55	+	0	transcript_id "Ledus.S2G226200.t1"; gene_id "Ledus.S2G226200"
Ledus.S2	AUGUSTUS	exon	17821274	17821427	.	+	.	transcript_id "Ledus.S2G226200.t1"; gene_id "Ledus.S2G226200"
Ledus.S2	AUGUSTUS	intron	17821428	17821605	.	+	.	transcript_id "Ledus.S2G226200.t1"; gene_id "Ledus.S2G226200"
Ledus.S2	AUGUSTUS	CDS	17821606	17821814	0.55	+	2	transcript_id "Ledus.S2G226200.t1"; gene_id "Ledus.S2G226200"
Ledus.S2	AUGUSTUS	exon	17821606	17821814	.	+	.	transcript_id "Ledus.S2G226200.t1"; gene_id "Ledus.S2G226200"
Ledus.S2	AUGUSTUS	stop_codon	17821815	17821817	.	+	0	transcript_id "Ledus.S2G226200.t1"; gene_id "Ledus.S2G226200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2150.t1 is derived from g9013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15299479	15302163	.	-	.	Ledus.S2G203200
Ledus.S2	AUGUSTUS	transcript	15299479	15302163	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	stop_codon	15299476	15299478	.	-	0	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	CDS	15299479	15299663	1	-	2	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	exon	15299479	15299663	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	intron	15299664	15299787	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	CDS	15299788	15299842	1	-	0	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	exon	15299788	15299842	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	intron	15299843	15299922	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	CDS	15299923	15299991	1	-	0	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	exon	15299923	15299991	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	intron	15299992	15300079	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	CDS	15300080	15300187	1	-	0	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	exon	15300080	15300187	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	intron	15300188	15300270	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	CDS	15300271	15300339	1	-	0	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	exon	15300271	15300339	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	intron	15300340	15300481	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	CDS	15300482	15300616	1	-	0	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	exon	15300482	15300616	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	intron	15300617	15300743	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	CDS	15300744	15300798	1	-	1	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	exon	15300744	15300798	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	intron	15300799	15300941	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	CDS	15300942	15301072	1	-	0	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	exon	15300942	15301072	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	intron	15301073	15301383	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	CDS	15301384	15301458	1	-	0	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	exon	15301384	15301458	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	intron	15301459	15301591	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	CDS	15301592	15301723	1	-	0	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	exon	15301592	15301723	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	intron	15301724	15301869	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	CDS	15301870	15302163	0.35	-	0	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	exon	15301870	15302163	.	-	.	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
Ledus.S2	AUGUSTUS	start_codon	15302161	15302163	.	-	0	transcript_id "Ledus.S2G203200.t1"; gene_id "Ledus.S2G203200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10670.t1 is derived from g11700.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17003985	17009687	.	+	.	Ledus.S3G214700
Ledus.S3	AUGUSTUS	transcript	17003985	17009687	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	start_codon	17003985	17003987	.	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17003985	17004366	0.86	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17003985	17004366	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17004367	17004463	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17004464	17004540	0.97	+	2	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17004464	17004540	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17004541	17004614	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17004615	17004744	0.7	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17004615	17004744	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17004745	17004813	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17004814	17004969	0.38	+	2	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17004814	17004969	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17004970	17005109	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17005110	17005306	1	+	2	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17005110	17005306	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17005307	17005390	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17005391	17005597	1	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17005391	17005597	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17005598	17005703	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17005704	17006486	0.94	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17005704	17006486	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17006487	17006623	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17006624	17007291	0.92	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17006624	17007291	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17007292	17007478	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17007479	17007554	1	+	1	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17007479	17007554	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17007555	17007645	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17007646	17007732	1	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17007646	17007732	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17007733	17007911	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17007912	17007955	1	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17007912	17007955	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17007956	17008035	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17008036	17008144	1	+	1	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17008036	17008144	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17008145	17008222	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17008223	17008282	0.96	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17008223	17008282	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17008283	17008401	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17008402	17008483	0.99	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17008402	17008483	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17008484	17008635	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17008636	17008700	1	+	2	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17008636	17008700	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17008701	17008866	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17008867	17008926	1	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17008867	17008926	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17008927	17009036	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17009037	17009081	1	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17009037	17009081	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17009082	17009218	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17009219	17009322	1	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17009219	17009322	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17009323	17009398	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17009399	17009687	0.83	+	1	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17009399	17009687	.	+	.	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	stop_codon	17009688	17009690	.	+	0	transcript_id "Ledus.S3G214700.t1"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	transcript	17003985	17009687	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	start_codon	17003985	17003987	.	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17003985	17004366	0.69	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17003985	17004366	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17004367	17004471	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17004472	17004744	0.63	+	2	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17004472	17004744	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17004745	17004813	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17004814	17004969	0.3	+	2	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17004814	17004969	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17004970	17005109	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17005110	17005306	0.97	+	2	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17005110	17005306	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17005307	17005390	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17005391	17005597	0.98	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17005391	17005597	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17005598	17005703	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17005704	17006486	0.94	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17005704	17006486	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17006487	17006623	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17006624	17007291	0.92	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17006624	17007291	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17007292	17007478	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17007479	17007554	1	+	1	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17007479	17007554	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17007555	17007645	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17007646	17007732	1	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17007646	17007732	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17007733	17007911	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17007912	17007955	1	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17007912	17007955	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17007956	17008035	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17008036	17008144	1	+	1	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17008036	17008144	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17008145	17008222	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17008223	17008282	1	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17008223	17008282	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17008283	17008401	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17008402	17008483	1	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17008402	17008483	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17008484	17008635	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17008636	17008700	1	+	2	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17008636	17008700	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17008701	17008866	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17008867	17008926	1	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17008867	17008926	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17008927	17009036	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17009037	17009081	1	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17009037	17009081	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17009082	17009218	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17009219	17009322	1	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17009219	17009322	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	intron	17009323	17009398	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	CDS	17009399	17009687	0.79	+	1	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	exon	17009399	17009687	.	+	.	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
Ledus.S3	AUGUSTUS	stop_codon	17009688	17009690	.	+	0	transcript_id "Ledus.S3G214700.t2"; gene_id "Ledus.S3G214700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8786.t1 is derived from g9816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1972488	1973971	.	-	.	Ledus.S3G026300
Ledus.S3	AUGUSTUS	transcript	1972488	1973971	.	-	.	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	stop_codon	1972485	1972487	.	-	0	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	CDS	1972488	1972616	0.18	-	0	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	exon	1972488	1972616	.	-	.	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	intron	1972617	1972710	.	-	.	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	CDS	1972711	1972831	1	-	1	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	exon	1972711	1972831	.	-	.	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	intron	1972832	1972932	.	-	.	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	CDS	1972933	1973027	1	-	0	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	exon	1972933	1973027	.	-	.	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	intron	1973028	1973115	.	-	.	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	CDS	1973116	1973289	0.87	-	0	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	exon	1973116	1973289	.	-	.	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	intron	1973290	1973399	.	-	.	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	CDS	1973400	1973489	0.97	-	0	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	exon	1973400	1973489	.	-	.	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	intron	1973490	1973590	.	-	.	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	CDS	1973591	1973971	0.76	-	0	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	exon	1973591	1973971	.	-	.	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
Ledus.S3	AUGUSTUS	start_codon	1973969	1973971	.	-	0	transcript_id "Ledus.S3G026300.t1"; gene_id "Ledus.S3G026300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10639.t1 is derived from g11669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16801124	16802793	.	+	.	Ledus.S3G211600
Ledus.S3	AUGUSTUS	transcript	16801124	16802793	.	+	.	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	start_codon	16801124	16801126	.	+	0	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	CDS	16801124	16801368	0.26	+	0	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	exon	16801124	16801368	.	+	.	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	intron	16801369	16801454	.	+	.	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	CDS	16801455	16801627	0.39	+	1	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	exon	16801455	16801627	.	+	.	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	intron	16801628	16802142	.	+	.	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	CDS	16802143	16802465	0.45	+	2	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	exon	16802143	16802465	.	+	.	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	intron	16802466	16802583	.	+	.	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	CDS	16802584	16802793	0.55	+	0	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	exon	16802584	16802793	.	+	.	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
Ledus.S3	AUGUSTUS	stop_codon	16802794	16802796	.	+	0	transcript_id "Ledus.S3G211600.t1"; gene_id "Ledus.S3G211600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4360.t1 is derived from g1796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16571260	16571466	.	-	.	Ledus.S1G178100
Ledus.S1	AUGUSTUS	transcript	16571260	16571466	.	-	.	transcript_id "Ledus.S1G178100.t1"; gene_id "Ledus.S1G178100"
Ledus.S1	AUGUSTUS	stop_codon	16571257	16571259	.	-	0	transcript_id "Ledus.S1G178100.t1"; gene_id "Ledus.S1G178100"
Ledus.S1	AUGUSTUS	CDS	16571260	16571466	0.43	-	0	transcript_id "Ledus.S1G178100.t1"; gene_id "Ledus.S1G178100"
Ledus.S1	AUGUSTUS	exon	16571260	16571466	.	-	.	transcript_id "Ledus.S1G178100.t1"; gene_id "Ledus.S1G178100"
Ledus.S1	AUGUSTUS	start_codon	16571464	16571466	.	-	0	transcript_id "Ledus.S1G178100.t1"; gene_id "Ledus.S1G178100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12237.t1 is derived from g5857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10593235	10595622	.	-	.	Ledus.S4G139300
Ledus.S4	AUGUSTUS	transcript	10593235	10595289	.	-	.	transcript_id "Ledus.S4G139300.t1"; gene_id "Ledus.S4G139300"
Ledus.S4	AUGUSTUS	stop_codon	10593232	10593234	.	-	0	transcript_id "Ledus.S4G139300.t1"; gene_id "Ledus.S4G139300"
Ledus.S4	AUGUSTUS	CDS	10593235	10595289	0.99	-	0	transcript_id "Ledus.S4G139300.t1"; gene_id "Ledus.S4G139300"
Ledus.S4	AUGUSTUS	exon	10593235	10595289	.	-	.	transcript_id "Ledus.S4G139300.t1"; gene_id "Ledus.S4G139300"
Ledus.S4	AUGUSTUS	start_codon	10595287	10595289	.	-	0	transcript_id "Ledus.S4G139300.t1"; gene_id "Ledus.S4G139300"
Ledus.S4	AUGUSTUS	transcript	10593235	10595622	.	-	.	transcript_id "Ledus.S4G139300.t2"; gene_id "Ledus.S4G139300"
Ledus.S4	AUGUSTUS	stop_codon	10593232	10593234	.	-	0	transcript_id "Ledus.S4G139300.t2"; gene_id "Ledus.S4G139300"
Ledus.S4	AUGUSTUS	CDS	10593235	10595622	0.86	-	0	transcript_id "Ledus.S4G139300.t2"; gene_id "Ledus.S4G139300"
Ledus.S4	AUGUSTUS	exon	10593235	10595622	.	-	.	transcript_id "Ledus.S4G139300.t2"; gene_id "Ledus.S4G139300"
Ledus.S4	AUGUSTUS	start_codon	10595620	10595622	.	-	0	transcript_id "Ledus.S4G139300.t2"; gene_id "Ledus.S4G139300"
# This transcript jg10118.t1 is derived from g11147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12894432	12894836	.	-	.	Ledus.S3G159400
Ledus.S3	AUGUSTUS	transcript	12894432	12894836	.	-	.	transcript_id "Ledus.S3G159400.t1"; gene_id "Ledus.S3G159400"
Ledus.S3	AUGUSTUS	stop_codon	12894429	12894431	.	-	0	transcript_id "Ledus.S3G159400.t1"; gene_id "Ledus.S3G159400"
Ledus.S3	AUGUSTUS	CDS	12894432	12894836	0.58	-	0	transcript_id "Ledus.S3G159400.t1"; gene_id "Ledus.S3G159400"
Ledus.S3	AUGUSTUS	exon	12894432	12894836	.	-	.	transcript_id "Ledus.S3G159400.t1"; gene_id "Ledus.S3G159400"
Ledus.S3	AUGUSTUS	start_codon	12894834	12894836	.	-	0	transcript_id "Ledus.S3G159400.t1"; gene_id "Ledus.S3G159400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12221.t1 is derived from g5840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10483357	10484355	.	+	.	Ledus.S4G137700
Ledus.S4	AUGUSTUS	transcript	10483357	10484355	.	+	.	transcript_id "Ledus.S4G137700.t1"; gene_id "Ledus.S4G137700"
Ledus.S4	AUGUSTUS	start_codon	10483357	10483359	.	+	0	transcript_id "Ledus.S4G137700.t1"; gene_id "Ledus.S4G137700"
Ledus.S4	AUGUSTUS	CDS	10483357	10484355	1	+	0	transcript_id "Ledus.S4G137700.t1"; gene_id "Ledus.S4G137700"
Ledus.S4	AUGUSTUS	exon	10483357	10484355	.	+	.	transcript_id "Ledus.S4G137700.t1"; gene_id "Ledus.S4G137700"
Ledus.S4	AUGUSTUS	stop_codon	10484356	10484358	.	+	0	transcript_id "Ledus.S4G137700.t1"; gene_id "Ledus.S4G137700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg290.t1 is derived from g7151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1427449	1429149	.	-	.	Ledus.S2G017200
Ledus.S2	AUGUSTUS	transcript	1427449	1429149	.	-	.	transcript_id "Ledus.S2G017200.t1"; gene_id "Ledus.S2G017200"
Ledus.S2	AUGUSTUS	stop_codon	1427446	1427448	.	-	0	transcript_id "Ledus.S2G017200.t1"; gene_id "Ledus.S2G017200"
Ledus.S2	AUGUSTUS	CDS	1427449	1429149	0.97	-	0	transcript_id "Ledus.S2G017200.t1"; gene_id "Ledus.S2G017200"
Ledus.S2	AUGUSTUS	exon	1427449	1429149	.	-	.	transcript_id "Ledus.S2G017200.t1"; gene_id "Ledus.S2G017200"
Ledus.S2	AUGUSTUS	start_codon	1429147	1429149	.	-	0	transcript_id "Ledus.S2G017200.t1"; gene_id "Ledus.S2G017200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5121.t1 is derived from g2560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21851345	21852373	.	+	.	Ledus.S1G254200
Ledus.S1	AUGUSTUS	transcript	21851345	21852373	.	+	.	transcript_id "Ledus.S1G254200.t1"; gene_id "Ledus.S1G254200"
Ledus.S1	AUGUSTUS	start_codon	21851345	21851347	.	+	0	transcript_id "Ledus.S1G254200.t1"; gene_id "Ledus.S1G254200"
Ledus.S1	AUGUSTUS	CDS	21851345	21851642	0.62	+	0	transcript_id "Ledus.S1G254200.t1"; gene_id "Ledus.S1G254200"
Ledus.S1	AUGUSTUS	exon	21851345	21851642	.	+	.	transcript_id "Ledus.S1G254200.t1"; gene_id "Ledus.S1G254200"
Ledus.S1	AUGUSTUS	intron	21851643	21851778	.	+	.	transcript_id "Ledus.S1G254200.t1"; gene_id "Ledus.S1G254200"
Ledus.S1	AUGUSTUS	CDS	21851779	21851852	1	+	2	transcript_id "Ledus.S1G254200.t1"; gene_id "Ledus.S1G254200"
Ledus.S1	AUGUSTUS	exon	21851779	21851852	.	+	.	transcript_id "Ledus.S1G254200.t1"; gene_id "Ledus.S1G254200"
Ledus.S1	AUGUSTUS	intron	21851853	21851938	.	+	.	transcript_id "Ledus.S1G254200.t1"; gene_id "Ledus.S1G254200"
Ledus.S1	AUGUSTUS	CDS	21851939	21852373	1	+	0	transcript_id "Ledus.S1G254200.t1"; gene_id "Ledus.S1G254200"
Ledus.S1	AUGUSTUS	exon	21851939	21852373	.	+	.	transcript_id "Ledus.S1G254200.t1"; gene_id "Ledus.S1G254200"
Ledus.S1	AUGUSTUS	stop_codon	21852374	21852376	.	+	0	transcript_id "Ledus.S1G254200.t1"; gene_id "Ledus.S1G254200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1136.t1 is derived from g7997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7863741	7864780	.	+	.	Ledus.S2G101800
Ledus.S2	AUGUSTUS	transcript	7863741	7864780	.	+	.	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	start_codon	7863741	7863743	.	+	0	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	CDS	7863741	7863920	0.56	+	0	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	exon	7863741	7863920	.	+	.	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	intron	7863921	7864038	.	+	.	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	CDS	7864039	7864154	1	+	0	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	exon	7864039	7864154	.	+	.	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	intron	7864155	7864264	.	+	.	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	CDS	7864265	7864328	1	+	1	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	exon	7864265	7864328	.	+	.	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	intron	7864329	7864441	.	+	.	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	CDS	7864442	7864780	1	+	0	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	exon	7864442	7864780	.	+	.	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
Ledus.S2	AUGUSTUS	stop_codon	7864781	7864783	.	+	0	transcript_id "Ledus.S2G101800.t1"; gene_id "Ledus.S2G101800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7407.t1 is derived from g12078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2124629	2125075	.	-	.	Ledus.S5G018500
Ledus.S5	AUGUSTUS	transcript	2124629	2125075	.	-	.	transcript_id "Ledus.S5G018500.t1"; gene_id "Ledus.S5G018500"
Ledus.S5	AUGUSTUS	stop_codon	2124626	2124628	.	-	0	transcript_id "Ledus.S5G018500.t1"; gene_id "Ledus.S5G018500"
Ledus.S5	AUGUSTUS	CDS	2124629	2125075	0.51	-	0	transcript_id "Ledus.S5G018500.t1"; gene_id "Ledus.S5G018500"
Ledus.S5	AUGUSTUS	exon	2124629	2125075	.	-	.	transcript_id "Ledus.S5G018500.t1"; gene_id "Ledus.S5G018500"
Ledus.S5	AUGUSTUS	start_codon	2125073	2125075	.	-	0	transcript_id "Ledus.S5G018500.t1"; gene_id "Ledus.S5G018500"
# This transcript jg1353.t2 is derived from g8214.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1354.t1 is derived from g8215.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9428114	9430174	.	+	.	Ledus.S2G123600
Ledus.S2	AUGUSTUS	transcript	9428114	9430174	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	start_codon	9428114	9428116	.	+	0	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	CDS	9428114	9428777	0.97	+	0	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	exon	9428114	9428777	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	intron	9428778	9428855	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	CDS	9428856	9428926	1	+	2	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	exon	9428856	9428926	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	intron	9428927	9429010	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	CDS	9429011	9429169	1	+	0	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	exon	9429011	9429169	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	intron	9429170	9429258	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	CDS	9429259	9429341	1	+	0	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	exon	9429259	9429341	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	intron	9429342	9429424	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	CDS	9429425	9429560	1	+	1	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	exon	9429425	9429560	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	intron	9429561	9429644	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	CDS	9429645	9429818	0.99	+	0	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	exon	9429645	9429818	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	intron	9429819	9429945	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	CDS	9429946	9430037	0.9	+	0	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	exon	9429946	9430037	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	intron	9430038	9430119	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	CDS	9430120	9430174	0.99	+	1	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	exon	9430120	9430174	.	+	.	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
Ledus.S2	AUGUSTUS	stop_codon	9430175	9430177	.	+	0	transcript_id "Ledus.S2G123600.t1"; gene_id "Ledus.S2G123600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8018.t1 is derived from g12689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8493553	8496838	.	-	.	Ledus.S5G079600
Ledus.S5	AUGUSTUS	transcript	8493553	8496838	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	stop_codon	8493550	8493552	.	-	0	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	CDS	8493553	8493711	0.95	-	0	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	exon	8493553	8493711	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	intron	8493712	8493789	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	CDS	8493790	8493840	1	-	0	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	exon	8493790	8493840	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	intron	8493841	8493928	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	CDS	8493929	8493997	1	-	0	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	exon	8493929	8493997	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	intron	8493998	8494097	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	CDS	8494098	8494167	1	-	1	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	exon	8494098	8494167	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	intron	8494168	8494267	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	CDS	8494268	8494318	1	-	1	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	exon	8494268	8494318	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	intron	8494319	8494400	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	CDS	8494401	8494612	1	-	0	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	exon	8494401	8494612	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	intron	8494613	8494742	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	CDS	8494743	8494844	1	-	0	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	exon	8494743	8494844	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	intron	8494845	8494929	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	CDS	8494930	8495070	1	-	0	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	exon	8494930	8495070	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	intron	8495071	8495239	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	CDS	8495240	8495677	1	-	0	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	exon	8495240	8495677	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	intron	8495678	8496208	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	CDS	8496209	8496838	0.42	-	0	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	exon	8496209	8496838	.	-	.	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
Ledus.S5	AUGUSTUS	start_codon	8496836	8496838	.	-	0	transcript_id "Ledus.S5G079600.t1"; gene_id "Ledus.S5G079600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7276.t1 is derived from g11947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	692636	700552	.	+	.	Ledus.S5G005400
Ledus.S5	AUGUSTUS	transcript	692636	700552	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	start_codon	692636	692638	.	+	0	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	CDS	692636	692827	0.67	+	0	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	exon	692636	692827	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	intron	692828	692910	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	CDS	692911	693006	0.68	+	0	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	exon	692911	693006	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	intron	693007	693215	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	CDS	693216	693501	1	+	0	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	exon	693216	693501	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	intron	693502	694027	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	CDS	694028	695017	1	+	2	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	exon	694028	695017	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	intron	695018	695201	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	CDS	695202	696470	0.98	+	2	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	exon	695202	696470	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	intron	696471	696786	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	CDS	696787	700053	0.71	+	2	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	exon	696787	700053	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	intron	700054	700550	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	CDS	700551	700552	1	+	2	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	exon	700551	700552	.	+	.	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
Ledus.S5	AUGUSTUS	stop_codon	700553	700555	.	+	0	transcript_id "Ledus.S5G005400.t1"; gene_id "Ledus.S5G005400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13126.t1 is derived from g6936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6589492	6589815	.	-	.	Ledus.S6G018800
Ledus.S6	AUGUSTUS	transcript	6589492	6589815	.	-	.	transcript_id "Ledus.S6G018800.t1"; gene_id "Ledus.S6G018800"
Ledus.S6	AUGUSTUS	stop_codon	6589489	6589491	.	-	0	transcript_id "Ledus.S6G018800.t1"; gene_id "Ledus.S6G018800"
Ledus.S6	AUGUSTUS	CDS	6589492	6589815	1	-	0	transcript_id "Ledus.S6G018800.t1"; gene_id "Ledus.S6G018800"
Ledus.S6	AUGUSTUS	exon	6589492	6589815	.	-	.	transcript_id "Ledus.S6G018800.t1"; gene_id "Ledus.S6G018800"
Ledus.S6	AUGUSTUS	start_codon	6589813	6589815	.	-	0	transcript_id "Ledus.S6G018800.t1"; gene_id "Ledus.S6G018800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11283.t1 is derived from g4901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3315081	3315401	.	-	.	Ledus.S4G043900
Ledus.S4	AUGUSTUS	transcript	3315081	3315401	.	-	.	transcript_id "Ledus.S4G043900.t1"; gene_id "Ledus.S4G043900"
Ledus.S4	AUGUSTUS	stop_codon	3315078	3315080	.	-	0	transcript_id "Ledus.S4G043900.t1"; gene_id "Ledus.S4G043900"
Ledus.S4	AUGUSTUS	CDS	3315081	3315401	0.83	-	0	transcript_id "Ledus.S4G043900.t1"; gene_id "Ledus.S4G043900"
Ledus.S4	AUGUSTUS	exon	3315081	3315401	.	-	.	transcript_id "Ledus.S4G043900.t1"; gene_id "Ledus.S4G043900"
Ledus.S4	AUGUSTUS	start_codon	3315399	3315401	.	-	0	transcript_id "Ledus.S4G043900.t1"; gene_id "Ledus.S4G043900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8135.t1 is derived from g12806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9312941	9317160	.	-	.	Ledus.S5G091300
Ledus.S5	AUGUSTUS	transcript	9312941	9317160	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	stop_codon	9312938	9312940	.	-	0	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9312941	9313098	1	-	2	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9312941	9313098	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9313099	9313193	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9313194	9313269	1	-	0	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9313194	9313269	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9313270	9313364	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9313365	9313416	0.58	-	1	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9313365	9313416	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9313417	9313565	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9313566	9313969	0.54	-	0	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9313566	9313969	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9313970	9314109	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9314110	9314232	1	-	0	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9314110	9314232	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9314233	9314368	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9314369	9314671	1	-	0	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9314369	9314671	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9314672	9314769	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9314770	9314871	1	-	0	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9314770	9314871	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9314872	9315033	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9315034	9315158	1	-	2	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9315034	9315158	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9315159	9315284	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9315285	9315367	1	-	1	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9315285	9315367	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9315368	9315453	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9315454	9315539	1	-	0	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9315454	9315539	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9315540	9315703	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9315704	9315803	1	-	1	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9315704	9315803	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9315804	9315911	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9315912	9315994	1	-	0	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9315912	9315994	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9315995	9316085	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9316086	9316153	1	-	2	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9316086	9316153	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	intron	9316154	9316313	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	CDS	9316314	9317160	0.36	-	0	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	exon	9316314	9317160	.	-	.	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
Ledus.S5	AUGUSTUS	start_codon	9317158	9317160	.	-	0	transcript_id "Ledus.S5G091300.t1"; gene_id "Ledus.S5G091300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1441.t1 is derived from g8302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10147367	10149019	.	+	.	Ledus.S2G132300
Ledus.S2	AUGUSTUS	transcript	10147367	10149019	.	+	.	transcript_id "Ledus.S2G132300.t1"; gene_id "Ledus.S2G132300"
Ledus.S2	AUGUSTUS	start_codon	10147367	10147369	.	+	0	transcript_id "Ledus.S2G132300.t1"; gene_id "Ledus.S2G132300"
Ledus.S2	AUGUSTUS	CDS	10147367	10149019	0.65	+	0	transcript_id "Ledus.S2G132300.t1"; gene_id "Ledus.S2G132300"
Ledus.S2	AUGUSTUS	exon	10147367	10149019	.	+	.	transcript_id "Ledus.S2G132300.t1"; gene_id "Ledus.S2G132300"
Ledus.S2	AUGUSTUS	stop_codon	10149020	10149022	.	+	0	transcript_id "Ledus.S2G132300.t1"; gene_id "Ledus.S2G132300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1702.t1 is derived from g8563.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11973680	11978904	.	-	.	Ledus.S2G158400
Ledus.S2	AUGUSTUS	transcript	11977898	11978904	.	-	.	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	stop_codon	11977895	11977897	.	-	0	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11977898	11977925	1	-	1	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11977898	11977925	.	-	.	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11977926	11978010	.	-	.	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11978011	11978117	1	-	0	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11978011	11978117	.	-	.	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11978118	11978406	.	-	.	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11978407	11978472	1	-	0	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11978407	11978472	.	-	.	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11978473	11978619	.	-	.	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11978620	11978904	0.83	-	0	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11978620	11978904	.	-	.	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	start_codon	11978902	11978904	.	-	0	transcript_id "Ledus.S2G158400.t1"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	transcript	11973680	11978904	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	stop_codon	11973677	11973679	.	-	0	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11973680	11974143	0.98	-	2	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11973680	11974143	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11974144	11974274	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11974275	11974512	0.94	-	0	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11974275	11974512	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11974513	11974626	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11974627	11974692	0.97	-	0	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11974627	11974692	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11974693	11974785	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11974786	11974972	1	-	1	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11974786	11974972	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11974973	11975068	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11975069	11975314	0.88	-	1	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11975069	11975314	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11975315	11975424	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11975425	11975564	1	-	0	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11975425	11975564	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11975565	11975645	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11975646	11975834	1	-	0	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11975646	11975834	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11975835	11975930	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11975931	11977925	0.75	-	0	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11975931	11977925	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11977926	11978018	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11978019	11978117	0.99	-	0	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11978019	11978117	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11978118	11978406	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11978407	11978472	1	-	0	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11978407	11978472	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	intron	11978473	11978619	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	CDS	11978620	11978904	0.88	-	0	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	exon	11978620	11978904	.	-	.	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
Ledus.S2	AUGUSTUS	start_codon	11978902	11978904	.	-	0	transcript_id "Ledus.S2G158400.t2"; gene_id "Ledus.S2G158400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7444.t1 is derived from g12115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2717878	2721189	.	-	.	Ledus.S5G022200
Ledus.S5	AUGUSTUS	transcript	2717878	2721189	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	stop_codon	2717875	2717877	.	-	0	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2717878	2718099	1	-	0	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2717878	2718099	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2718100	2718186	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2718187	2718320	1	-	2	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2718187	2718320	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2718321	2718401	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2718402	2718656	1	-	2	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2718402	2718656	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2718657	2718727	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2718728	2719060	0.99	-	2	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2718728	2719060	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2719061	2719180	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2719181	2719312	1	-	2	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2719181	2719312	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2719313	2719404	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2719405	2719514	1	-	1	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2719405	2719514	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2719515	2719640	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2719641	2719712	1	-	1	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2719641	2719712	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2719713	2719782	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2719783	2719854	1	-	1	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2719783	2719854	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2719855	2719967	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2719968	2720039	0.9	-	1	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2719968	2720039	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2720040	2720146	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2720147	2720218	1	-	1	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2720147	2720218	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2720219	2720304	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2720305	2720443	1	-	2	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2720305	2720443	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2720444	2720520	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2720521	2720632	1	-	0	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2720521	2720632	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2720633	2720782	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2720783	2720985	0.51	-	2	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2720783	2720985	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	intron	2720986	2721080	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	CDS	2721081	2721189	0.8	-	0	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	exon	2721081	2721189	.	-	.	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
Ledus.S5	AUGUSTUS	start_codon	2721187	2721189	.	-	0	transcript_id "Ledus.S5G022200.t1"; gene_id "Ledus.S5G022200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4313.t1 is derived from g1749.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16158253	16159197	.	+	.	Ledus.S1G173400
Ledus.S1	AUGUSTUS	transcript	16158253	16159197	.	+	.	transcript_id "Ledus.S1G173400.t1"; gene_id "Ledus.S1G173400"
Ledus.S1	AUGUSTUS	start_codon	16158253	16158255	.	+	0	transcript_id "Ledus.S1G173400.t1"; gene_id "Ledus.S1G173400"
Ledus.S1	AUGUSTUS	CDS	16158253	16159197	0.67	+	0	transcript_id "Ledus.S1G173400.t1"; gene_id "Ledus.S1G173400"
Ledus.S1	AUGUSTUS	exon	16158253	16159197	.	+	.	transcript_id "Ledus.S1G173400.t1"; gene_id "Ledus.S1G173400"
Ledus.S1	AUGUSTUS	stop_codon	16159198	16159200	.	+	0	transcript_id "Ledus.S1G173400.t1"; gene_id "Ledus.S1G173400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5943.t1 is derived from g3386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27980775	27981365	.	+	.	Ledus.S1G336400
Ledus.S1	AUGUSTUS	transcript	27980775	27981365	.	+	.	transcript_id "Ledus.S1G336400.t1"; gene_id "Ledus.S1G336400"
Ledus.S1	AUGUSTUS	start_codon	27980775	27980777	.	+	0	transcript_id "Ledus.S1G336400.t1"; gene_id "Ledus.S1G336400"
Ledus.S1	AUGUSTUS	CDS	27980775	27981365	0.65	+	0	transcript_id "Ledus.S1G336400.t1"; gene_id "Ledus.S1G336400"
Ledus.S1	AUGUSTUS	exon	27980775	27981365	.	+	.	transcript_id "Ledus.S1G336400.t1"; gene_id "Ledus.S1G336400"
Ledus.S1	AUGUSTUS	stop_codon	27981366	27981368	.	+	0	transcript_id "Ledus.S1G336400.t1"; gene_id "Ledus.S1G336400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6233.t1 is derived from g3676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29781590	29782489	.	+	.	Ledus.S1G365400
Ledus.S1	AUGUSTUS	transcript	29781590	29782489	.	+	.	transcript_id "Ledus.S1G365400.t1"; gene_id "Ledus.S1G365400"
Ledus.S1	AUGUSTUS	start_codon	29781590	29781592	.	+	0	transcript_id "Ledus.S1G365400.t1"; gene_id "Ledus.S1G365400"
Ledus.S1	AUGUSTUS	CDS	29781590	29782228	0.61	+	0	transcript_id "Ledus.S1G365400.t1"; gene_id "Ledus.S1G365400"
Ledus.S1	AUGUSTUS	exon	29781590	29782228	.	+	.	transcript_id "Ledus.S1G365400.t1"; gene_id "Ledus.S1G365400"
Ledus.S1	AUGUSTUS	intron	29782229	29782324	.	+	.	transcript_id "Ledus.S1G365400.t1"; gene_id "Ledus.S1G365400"
Ledus.S1	AUGUSTUS	CDS	29782325	29782489	0.89	+	0	transcript_id "Ledus.S1G365400.t1"; gene_id "Ledus.S1G365400"
Ledus.S1	AUGUSTUS	exon	29782325	29782489	.	+	.	transcript_id "Ledus.S1G365400.t1"; gene_id "Ledus.S1G365400"
Ledus.S1	AUGUSTUS	stop_codon	29782490	29782492	.	+	0	transcript_id "Ledus.S1G365400.t1"; gene_id "Ledus.S1G365400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1492.t1 is derived from g8353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10570579	10572817	.	-	.	Ledus.S2G137400
Ledus.S2	AUGUSTUS	transcript	10570579	10572817	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	stop_codon	10570576	10570578	.	-	0	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10570579	10570697	1	-	2	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10570579	10570697	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10570698	10570860	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10570861	10570914	1	-	2	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10570861	10570914	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10570915	10571071	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10571072	10571353	1	-	2	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10571072	10571353	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10571354	10571449	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10571450	10571922	1	-	1	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10571450	10571922	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10571923	10572010	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10572011	10572096	1	-	0	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10572011	10572096	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10572097	10572178	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10572179	10572284	1	-	1	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10572179	10572284	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10572285	10572382	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10572383	10572684	1	-	0	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10572383	10572684	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10572685	10572772	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10572773	10572817	1	-	0	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10572773	10572817	.	-	.	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	start_codon	10572815	10572817	.	-	0	transcript_id "Ledus.S2G137400.t1"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	transcript	10570579	10572817	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	stop_codon	10570576	10570578	.	-	0	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10570579	10570697	0.98	-	2	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10570579	10570697	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10570698	10570860	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10570861	10570914	0.99	-	2	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10570861	10570914	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10570915	10571067	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10571068	10571084	0.63	-	1	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10571068	10571084	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10571085	10571184	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10571185	10571353	0.44	-	2	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10571185	10571353	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10571354	10571449	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10571450	10571922	1	-	1	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10571450	10571922	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10571923	10572010	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10572011	10572096	1	-	0	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10572011	10572096	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10572097	10572178	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10572179	10572284	1	-	1	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10572179	10572284	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10572285	10572382	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10572383	10572684	1	-	0	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10572383	10572684	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	intron	10572685	10572772	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	CDS	10572773	10572817	1	-	0	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	exon	10572773	10572817	.	-	.	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
Ledus.S2	AUGUSTUS	start_codon	10572815	10572817	.	-	0	transcript_id "Ledus.S2G137400.t2"; gene_id "Ledus.S2G137400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2627.t1 is derived from g60.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	820372	820830	.	+	.	Ledus.S1G004800
Ledus.S1	AUGUSTUS	transcript	820372	820830	.	+	.	transcript_id "Ledus.S1G004800.t1"; gene_id "Ledus.S1G004800"
Ledus.S1	AUGUSTUS	start_codon	820372	820374	.	+	0	transcript_id "Ledus.S1G004800.t1"; gene_id "Ledus.S1G004800"
Ledus.S1	AUGUSTUS	CDS	820372	820830	0.96	+	0	transcript_id "Ledus.S1G004800.t1"; gene_id "Ledus.S1G004800"
Ledus.S1	AUGUSTUS	exon	820372	820830	.	+	.	transcript_id "Ledus.S1G004800.t1"; gene_id "Ledus.S1G004800"
Ledus.S1	AUGUSTUS	stop_codon	820831	820833	.	+	0	transcript_id "Ledus.S1G004800.t1"; gene_id "Ledus.S1G004800"
# This transcript jg1947.t2 is derived from g8810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1948.t1 is derived from g8811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13651520	13653535	.	+	.	Ledus.S2G183000
Ledus.S2	AUGUSTUS	transcript	13651520	13653535	.	+	.	transcript_id "Ledus.S2G183000.t1"; gene_id "Ledus.S2G183000"
Ledus.S2	AUGUSTUS	start_codon	13651520	13651522	.	+	0	transcript_id "Ledus.S2G183000.t1"; gene_id "Ledus.S2G183000"
Ledus.S2	AUGUSTUS	CDS	13651520	13653535	0.99	+	0	transcript_id "Ledus.S2G183000.t1"; gene_id "Ledus.S2G183000"
Ledus.S2	AUGUSTUS	exon	13651520	13653535	.	+	.	transcript_id "Ledus.S2G183000.t1"; gene_id "Ledus.S2G183000"
Ledus.S2	AUGUSTUS	stop_codon	13653536	13653538	.	+	0	transcript_id "Ledus.S2G183000.t1"; gene_id "Ledus.S2G183000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8709.t1 is derived from g9739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1545366	1546586	.	-	.	Ledus.S3G018600
Ledus.S3	AUGUSTUS	transcript	1545366	1546586	.	-	.	transcript_id "Ledus.S3G018600.t1"; gene_id "Ledus.S3G018600"
Ledus.S3	AUGUSTUS	stop_codon	1545363	1545365	.	-	0	transcript_id "Ledus.S3G018600.t1"; gene_id "Ledus.S3G018600"
Ledus.S3	AUGUSTUS	CDS	1545366	1545761	0.9	-	0	transcript_id "Ledus.S3G018600.t1"; gene_id "Ledus.S3G018600"
Ledus.S3	AUGUSTUS	exon	1545366	1545761	.	-	.	transcript_id "Ledus.S3G018600.t1"; gene_id "Ledus.S3G018600"
Ledus.S3	AUGUSTUS	intron	1545762	1545869	.	-	.	transcript_id "Ledus.S3G018600.t1"; gene_id "Ledus.S3G018600"
Ledus.S3	AUGUSTUS	CDS	1545870	1546586	0.48	-	0	transcript_id "Ledus.S3G018600.t1"; gene_id "Ledus.S3G018600"
Ledus.S3	AUGUSTUS	exon	1545870	1546586	.	-	.	transcript_id "Ledus.S3G018600.t1"; gene_id "Ledus.S3G018600"
Ledus.S3	AUGUSTUS	start_codon	1546584	1546586	.	-	0	transcript_id "Ledus.S3G018600.t1"; gene_id "Ledus.S3G018600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10400.t1 is derived from g11430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14801290	14802805	.	-	.	Ledus.S3G187700
Ledus.S3	AUGUSTUS	transcript	14801290	14802805	.	-	.	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	stop_codon	14801287	14801289	.	-	0	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	CDS	14801290	14801382	0.97	-	0	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	exon	14801290	14801382	.	-	.	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	intron	14801383	14801472	.	-	.	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	CDS	14801473	14801649	1	-	0	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	exon	14801473	14801649	.	-	.	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	intron	14801650	14801740	.	-	.	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	CDS	14801741	14801863	1	-	0	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	exon	14801741	14801863	.	-	.	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	intron	14801864	14801959	.	-	.	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	CDS	14801960	14802181	1	-	0	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	exon	14801960	14802181	.	-	.	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	intron	14802182	14802293	.	-	.	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	CDS	14802294	14802344	1	-	0	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	exon	14802294	14802344	.	-	.	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	intron	14802345	14802454	.	-	.	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	CDS	14802455	14802805	0.97	-	0	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	exon	14802455	14802805	.	-	.	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
Ledus.S3	AUGUSTUS	start_codon	14802803	14802805	.	-	0	transcript_id "Ledus.S3G187700.t1"; gene_id "Ledus.S3G187700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg575.t1 is derived from g7436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3425879	3426646	.	+	.	Ledus.S2G045700
Ledus.S2	AUGUSTUS	transcript	3425879	3426646	.	+	.	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	start_codon	3425879	3425881	.	+	0	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	CDS	3425879	3425977	1	+	0	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	exon	3425879	3425977	.	+	.	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	intron	3425978	3426067	.	+	.	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	CDS	3426068	3426176	1	+	0	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	exon	3426068	3426176	.	+	.	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	intron	3426177	3426332	.	+	.	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	CDS	3426333	3426421	0.54	+	2	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	exon	3426333	3426421	.	+	.	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	intron	3426422	3426631	.	+	.	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	CDS	3426632	3426646	0.53	+	0	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	exon	3426632	3426646	.	+	.	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
Ledus.S2	AUGUSTUS	stop_codon	3426647	3426649	.	+	0	transcript_id "Ledus.S2G045700.t1"; gene_id "Ledus.S2G045700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2987.t1 is derived from g422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5168317	5172286	.	+	.	Ledus.S1G040800
Ledus.S1	AUGUSTUS	transcript	5168317	5172286	.	+	.	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	start_codon	5168317	5168319	.	+	0	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	CDS	5168317	5168384	0.45	+	0	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	exon	5168317	5168384	.	+	.	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	intron	5168385	5168641	.	+	.	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	CDS	5168642	5170529	0.9	+	1	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	exon	5168642	5170529	.	+	.	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	intron	5170530	5170757	.	+	.	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	CDS	5170758	5171749	1	+	0	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	exon	5170758	5171749	.	+	.	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	intron	5171750	5171870	.	+	.	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	CDS	5171871	5172011	1	+	1	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	exon	5171871	5172011	.	+	.	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	intron	5172012	5172138	.	+	.	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	CDS	5172139	5172286	0.94	+	1	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	exon	5172139	5172286	.	+	.	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
Ledus.S1	AUGUSTUS	stop_codon	5172287	5172289	.	+	0	transcript_id "Ledus.S1G040800.t1"; gene_id "Ledus.S1G040800"
# This transcript jg6509.t2 is derived from g3952.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6509.t3 is derived from g3952.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6510.t1 is derived from g3953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31776098	31778007	.	+	.	Ledus.S1G393100
Ledus.S1	AUGUSTUS	transcript	31776098	31778007	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	start_codon	31776098	31776100	.	+	0	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	CDS	31776098	31776263	0.58	+	0	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	exon	31776098	31776263	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	intron	31776264	31776360	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	CDS	31776361	31776557	1	+	2	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	exon	31776361	31776557	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	intron	31776558	31776702	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	CDS	31776703	31776776	0.72	+	0	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	exon	31776703	31776776	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	intron	31776777	31776888	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	CDS	31776889	31776941	0.99	+	1	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	exon	31776889	31776941	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	intron	31776942	31777051	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	CDS	31777052	31777203	1	+	2	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	exon	31777052	31777203	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	intron	31777204	31777327	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	CDS	31777328	31777531	1	+	0	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	exon	31777328	31777531	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	intron	31777532	31777761	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	CDS	31777762	31778007	0.98	+	0	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	exon	31777762	31778007	.	+	.	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
Ledus.S1	AUGUSTUS	stop_codon	31778008	31778010	.	+	0	transcript_id "Ledus.S1G393100.t1"; gene_id "Ledus.S1G393100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5858.t1 is derived from g3300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27343398	27345458	.	+	.	Ledus.S1G327900
Ledus.S1	AUGUSTUS	transcript	27343398	27345458	.	+	.	transcript_id "Ledus.S1G327900.t1"; gene_id "Ledus.S1G327900"
Ledus.S1	AUGUSTUS	start_codon	27343398	27343400	.	+	0	transcript_id "Ledus.S1G327900.t1"; gene_id "Ledus.S1G327900"
Ledus.S1	AUGUSTUS	CDS	27343398	27345458	0.94	+	0	transcript_id "Ledus.S1G327900.t1"; gene_id "Ledus.S1G327900"
Ledus.S1	AUGUSTUS	exon	27343398	27345458	.	+	.	transcript_id "Ledus.S1G327900.t1"; gene_id "Ledus.S1G327900"
Ledus.S1	AUGUSTUS	stop_codon	27345459	27345461	.	+	0	transcript_id "Ledus.S1G327900.t1"; gene_id "Ledus.S1G327900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11645.t1 is derived from g5264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5717412	5717840	.	+	.	Ledus.S4G080100
Ledus.S4	AUGUSTUS	transcript	5717412	5717840	.	+	.	transcript_id "Ledus.S4G080100.t1"; gene_id "Ledus.S4G080100"
Ledus.S4	AUGUSTUS	start_codon	5717412	5717414	.	+	0	transcript_id "Ledus.S4G080100.t1"; gene_id "Ledus.S4G080100"
Ledus.S4	AUGUSTUS	CDS	5717412	5717513	1	+	0	transcript_id "Ledus.S4G080100.t1"; gene_id "Ledus.S4G080100"
Ledus.S4	AUGUSTUS	exon	5717412	5717513	.	+	.	transcript_id "Ledus.S4G080100.t1"; gene_id "Ledus.S4G080100"
Ledus.S4	AUGUSTUS	intron	5717514	5717606	.	+	.	transcript_id "Ledus.S4G080100.t1"; gene_id "Ledus.S4G080100"
Ledus.S4	AUGUSTUS	CDS	5717607	5717681	1	+	0	transcript_id "Ledus.S4G080100.t1"; gene_id "Ledus.S4G080100"
Ledus.S4	AUGUSTUS	exon	5717607	5717681	.	+	.	transcript_id "Ledus.S4G080100.t1"; gene_id "Ledus.S4G080100"
Ledus.S4	AUGUSTUS	intron	5717682	5717777	.	+	.	transcript_id "Ledus.S4G080100.t1"; gene_id "Ledus.S4G080100"
Ledus.S4	AUGUSTUS	CDS	5717778	5717840	1	+	0	transcript_id "Ledus.S4G080100.t1"; gene_id "Ledus.S4G080100"
Ledus.S4	AUGUSTUS	exon	5717778	5717840	.	+	.	transcript_id "Ledus.S4G080100.t1"; gene_id "Ledus.S4G080100"
Ledus.S4	AUGUSTUS	stop_codon	5717841	5717843	.	+	0	transcript_id "Ledus.S4G080100.t1"; gene_id "Ledus.S4G080100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9160.t1 is derived from g10190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4944474	4946084	.	+	.	Ledus.S3G063700
Ledus.S3	AUGUSTUS	transcript	4944474	4946084	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	start_codon	4944474	4944476	.	+	0	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	CDS	4944474	4944768	0.99	+	0	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	exon	4944474	4944768	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	intron	4944769	4944967	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	CDS	4944968	4945003	0.99	+	2	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	exon	4944968	4945003	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	intron	4945004	4945056	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	CDS	4945057	4945114	0.99	+	2	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	exon	4945057	4945114	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	intron	4945115	4945210	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	CDS	4945211	4945318	1	+	1	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	exon	4945211	4945318	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	intron	4945319	4945403	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	CDS	4945404	4945487	1	+	1	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	exon	4945404	4945487	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	intron	4945488	4945614	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	CDS	4945615	4945725	0.41	+	1	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	exon	4945615	4945725	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	intron	4945726	4945801	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	CDS	4945802	4946084	0.65	+	1	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	exon	4945802	4946084	.	+	.	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
Ledus.S3	AUGUSTUS	stop_codon	4946085	4946087	.	+	0	transcript_id "Ledus.S3G063700.t1"; gene_id "Ledus.S3G063700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5180.t1 is derived from g2619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22176292	22178620	.	-	.	Ledus.S1G260100
Ledus.S1	AUGUSTUS	transcript	22176292	22178620	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	stop_codon	22176289	22176291	.	-	0	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22176292	22176306	1	-	0	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22176292	22176306	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	intron	22176307	22176402	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22176403	22176465	1	-	0	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22176403	22176465	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	intron	22176466	22176564	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22176565	22176608	1	-	2	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22176565	22176608	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	intron	22176609	22176685	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22176686	22176772	1	-	2	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22176686	22176772	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	intron	22176773	22176834	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22176835	22176883	1	-	0	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22176835	22176883	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	intron	22176884	22176963	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22176964	22177023	1	-	0	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22176964	22177023	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	intron	22177024	22177112	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22177113	22177190	0.96	-	0	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22177113	22177190	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	intron	22177191	22177596	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22177597	22177656	0.99	-	0	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22177597	22177656	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	intron	22177657	22177745	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22177746	22177814	0.99	-	0	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22177746	22177814	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	intron	22177815	22177899	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22177900	22177962	0.97	-	0	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22177900	22177962	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	intron	22177963	22178171	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22178172	22178243	0.93	-	0	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22178172	22178243	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	intron	22178244	22178327	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22178328	22178451	0.92	-	1	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22178328	22178451	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	intron	22178452	22178531	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	CDS	22178532	22178620	0.86	-	0	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	exon	22178532	22178620	.	-	.	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
Ledus.S1	AUGUSTUS	start_codon	22178618	22178620	.	-	0	transcript_id "Ledus.S1G260100.t1"; gene_id "Ledus.S1G260100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2503.t1 is derived from g9366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18494231	18495957	.	-	.	Ledus.S2G238500
Ledus.S2	AUGUSTUS	transcript	18494231	18495957	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	stop_codon	18494228	18494230	.	-	0	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	CDS	18494231	18494299	1	-	0	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	exon	18494231	18494299	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	intron	18494300	18494394	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	CDS	18494395	18494468	1	-	2	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	exon	18494395	18494468	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	intron	18494469	18494567	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	CDS	18494568	18494572	1	-	1	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	exon	18494568	18494572	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	intron	18494573	18494658	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	CDS	18494659	18494669	1	-	0	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	exon	18494659	18494669	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	intron	18494670	18494760	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	CDS	18494761	18494853	1	-	0	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	exon	18494761	18494853	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	intron	18494854	18494953	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	CDS	18494954	18494998	1	-	0	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	exon	18494954	18494998	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	intron	18494999	18495095	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	CDS	18495096	18495146	1	-	0	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	exon	18495096	18495146	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	intron	18495147	18495224	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	CDS	18495225	18495296	1	-	0	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	exon	18495225	18495296	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	intron	18495297	18495463	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	CDS	18495464	18495551	1	-	1	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	exon	18495464	18495551	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	intron	18495552	18495880	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	CDS	18495881	18495957	0.97	-	0	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	exon	18495881	18495957	.	-	.	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
Ledus.S2	AUGUSTUS	start_codon	18495955	18495957	.	-	0	transcript_id "Ledus.S2G238500.t1"; gene_id "Ledus.S2G238500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10606.t1 is derived from g11636.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16338304	16340319	.	-	.	Ledus.S3G208300
Ledus.S3	AUGUSTUS	transcript	16338304	16340319	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	stop_codon	16338301	16338303	.	-	0	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	CDS	16338304	16338408	0.99	-	0	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	exon	16338304	16338408	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	intron	16338409	16338531	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	CDS	16338532	16338700	0.99	-	1	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	exon	16338532	16338700	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	intron	16338701	16338821	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	CDS	16338822	16338883	1	-	0	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	exon	16338822	16338883	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	intron	16338884	16339040	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	CDS	16339041	16339128	1	-	1	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	exon	16339041	16339128	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	intron	16339129	16339278	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	CDS	16339279	16339487	1	-	0	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	exon	16339279	16339487	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	intron	16339488	16339637	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	CDS	16339638	16339689	1	-	1	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	exon	16339638	16339689	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	intron	16339690	16339900	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	CDS	16339901	16340319	0.78	-	0	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	exon	16339901	16340319	.	-	.	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
Ledus.S3	AUGUSTUS	start_codon	16340317	16340319	.	-	0	transcript_id "Ledus.S3G208300.t1"; gene_id "Ledus.S3G208300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg737.t1 is derived from g7598.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4682122	4683354	.	+	.	Ledus.S2G061900
Ledus.S2	AUGUSTUS	transcript	4682122	4683354	.	+	.	transcript_id "Ledus.S2G061900.t1"; gene_id "Ledus.S2G061900"
Ledus.S2	AUGUSTUS	start_codon	4682122	4682124	.	+	0	transcript_id "Ledus.S2G061900.t1"; gene_id "Ledus.S2G061900"
Ledus.S2	AUGUSTUS	CDS	4682122	4683354	1	+	0	transcript_id "Ledus.S2G061900.t1"; gene_id "Ledus.S2G061900"
Ledus.S2	AUGUSTUS	exon	4682122	4683354	.	+	.	transcript_id "Ledus.S2G061900.t1"; gene_id "Ledus.S2G061900"
Ledus.S2	AUGUSTUS	stop_codon	4683355	4683357	.	+	0	transcript_id "Ledus.S2G061900.t1"; gene_id "Ledus.S2G061900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9487.t1 is derived from g10517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7323981	7325016	.	+	.	Ledus.S3G096400
Ledus.S3	AUGUSTUS	transcript	7323981	7325016	.	+	.	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	start_codon	7323981	7323983	.	+	0	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	CDS	7323981	7324112	1	+	0	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	exon	7323981	7324112	.	+	.	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	intron	7324113	7324236	.	+	.	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	CDS	7324237	7324355	1	+	0	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	exon	7324237	7324355	.	+	.	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	intron	7324356	7324448	.	+	.	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	CDS	7324449	7324628	1	+	1	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	exon	7324449	7324628	.	+	.	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	intron	7324629	7324708	.	+	.	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	CDS	7324709	7324756	1	+	1	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	exon	7324709	7324756	.	+	.	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	intron	7324757	7324834	.	+	.	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	CDS	7324835	7324899	1	+	1	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	exon	7324835	7324899	.	+	.	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	intron	7324900	7324981	.	+	.	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	CDS	7324982	7325016	1	+	2	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	exon	7324982	7325016	.	+	.	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
Ledus.S3	AUGUSTUS	stop_codon	7325017	7325019	.	+	0	transcript_id "Ledus.S3G096400.t1"; gene_id "Ledus.S3G096400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1852.t1 is derived from g8715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12958791	12962346	.	+	.	Ledus.S2G173400
Ledus.S2	AUGUSTUS	transcript	12958791	12962323	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	start_codon	12958791	12958793	.	+	0	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12958791	12958835	0.57	+	0	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12958791	12958835	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12958836	12959006	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12959007	12959216	1	+	0	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12959007	12959216	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12959217	12959315	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12959316	12959360	1	+	0	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12959316	12959360	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12959361	12959444	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12959445	12959512	1	+	0	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12959445	12959512	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12959513	12959631	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12959632	12959716	1	+	1	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12959632	12959716	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12959717	12959848	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12959849	12960004	1	+	0	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12959849	12960004	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12960005	12960096	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12960097	12960147	1	+	0	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12960097	12960147	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12960148	12960337	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12960338	12960421	1	+	0	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12960338	12960421	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12960422	12960536	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12960537	12960599	0.99	+	0	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12960537	12960599	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12960600	12960674	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12960675	12960946	0.98	+	0	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12960675	12960946	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12960947	12961050	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12961051	12961117	0.98	+	1	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12961051	12961117	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12961118	12961191	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12961192	12961277	1	+	0	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12961192	12961277	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12961278	12961367	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12961368	12961471	1	+	1	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12961368	12961471	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12961472	12961568	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12961569	12961698	1	+	2	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12961569	12961698	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12961699	12961783	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12961784	12962061	0.99	+	1	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12961784	12962061	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12962062	12962252	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12962253	12962323	0.99	+	2	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12962253	12962323	.	+	.	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	stop_codon	12962324	12962326	.	+	0	transcript_id "Ledus.S2G173400.t1"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	transcript	12958791	12962346	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	start_codon	12958791	12958793	.	+	0	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12958791	12958835	0.5	+	0	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12958791	12958835	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12958836	12959006	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12959007	12959216	1	+	0	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12959007	12959216	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12959217	12959315	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12959316	12959360	1	+	0	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12959316	12959360	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12959361	12959444	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12959445	12959512	1	+	0	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12959445	12959512	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12959513	12959631	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12959632	12959716	1	+	1	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12959632	12959716	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12959717	12959848	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12959849	12960004	1	+	0	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12959849	12960004	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12960005	12960096	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12960097	12960147	1	+	0	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12960097	12960147	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12960148	12960337	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12960338	12960421	1	+	0	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12960338	12960421	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12960422	12960536	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12960537	12960599	0.98	+	0	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12960537	12960599	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12960600	12960674	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12960675	12960946	0.98	+	0	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12960675	12960946	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12960947	12961050	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12961051	12961117	0.95	+	1	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12961051	12961117	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12961118	12961191	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12961192	12961277	1	+	0	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12961192	12961277	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12961278	12961367	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12961368	12961471	1	+	1	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12961368	12961471	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12961472	12961568	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12961569	12961698	1	+	2	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12961569	12961698	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12961699	12961783	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12961784	12961858	1	+	1	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12961784	12961858	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	intron	12961859	12962252	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	CDS	12962253	12962346	1	+	1	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	exon	12962253	12962346	.	+	.	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
Ledus.S2	AUGUSTUS	stop_codon	12962347	12962349	.	+	0	transcript_id "Ledus.S2G173400.t2"; gene_id "Ledus.S2G173400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg106.t1 is derived from g9519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	429491	433050	.	+	.	Ledus.C8G006600
Ledus.C8	AUGUSTUS	transcript	429491	433050	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	start_codon	429491	429493	.	+	0	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	CDS	429491	430099	0.99	+	0	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	exon	429491	430099	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	intron	430100	430218	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	CDS	430219	430341	0.92	+	0	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	exon	430219	430341	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	intron	430342	430466	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	CDS	430467	430571	1	+	0	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	exon	430467	430571	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	intron	430572	430705	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	CDS	430706	430885	1	+	0	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	exon	430706	430885	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	intron	430886	431035	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	CDS	431036	431296	1	+	0	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	exon	431036	431296	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	intron	431297	431391	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	CDS	431392	431493	1	+	0	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	exon	431392	431493	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	intron	431494	431643	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	CDS	431644	431706	1	+	0	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	exon	431644	431706	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	intron	431707	431788	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	CDS	431789	431857	1	+	0	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	exon	431789	431857	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	intron	431858	431944	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	CDS	431945	431978	0.48	+	0	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	exon	431945	431978	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	intron	431979	432103	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	CDS	432104	432244	0.44	+	2	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	exon	432104	432244	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	intron	432245	432633	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	CDS	432634	432936	0.35	+	2	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	exon	432634	432936	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	intron	432937	433027	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	CDS	433028	433050	0.69	+	2	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	exon	433028	433050	.	+	.	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
Ledus.C8	AUGUSTUS	stop_codon	433051	433053	.	+	0	transcript_id "Ledus.C8G006600.t1"; gene_id "Ledus.C8G006600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9646.t1 is derived from g10676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8626902	8627198	.	+	.	Ledus.S3G112300
Ledus.S3	AUGUSTUS	transcript	8626902	8627198	.	+	.	transcript_id "Ledus.S3G112300.t1"; gene_id "Ledus.S3G112300"
Ledus.S3	AUGUSTUS	start_codon	8626902	8626904	.	+	0	transcript_id "Ledus.S3G112300.t1"; gene_id "Ledus.S3G112300"
Ledus.S3	AUGUSTUS	CDS	8626902	8627198	0.58	+	0	transcript_id "Ledus.S3G112300.t1"; gene_id "Ledus.S3G112300"
Ledus.S3	AUGUSTUS	exon	8626902	8627198	.	+	.	transcript_id "Ledus.S3G112300.t1"; gene_id "Ledus.S3G112300"
Ledus.S3	AUGUSTUS	stop_codon	8627199	8627201	.	+	0	transcript_id "Ledus.S3G112300.t1"; gene_id "Ledus.S3G112300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2905.t1 is derived from g340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4504811	4505237	.	-	.	Ledus.S1G032600
Ledus.S1	AUGUSTUS	transcript	4504811	4505237	.	-	.	transcript_id "Ledus.S1G032600.t1"; gene_id "Ledus.S1G032600"
Ledus.S1	AUGUSTUS	stop_codon	4504808	4504810	.	-	0	transcript_id "Ledus.S1G032600.t1"; gene_id "Ledus.S1G032600"
Ledus.S1	AUGUSTUS	CDS	4504811	4504956	0.69	-	2	transcript_id "Ledus.S1G032600.t1"; gene_id "Ledus.S1G032600"
Ledus.S1	AUGUSTUS	exon	4504811	4504956	.	-	.	transcript_id "Ledus.S1G032600.t1"; gene_id "Ledus.S1G032600"
Ledus.S1	AUGUSTUS	intron	4504957	4505131	.	-	.	transcript_id "Ledus.S1G032600.t1"; gene_id "Ledus.S1G032600"
Ledus.S1	AUGUSTUS	CDS	4505132	4505237	0.35	-	0	transcript_id "Ledus.S1G032600.t1"; gene_id "Ledus.S1G032600"
Ledus.S1	AUGUSTUS	exon	4505132	4505237	.	-	.	transcript_id "Ledus.S1G032600.t1"; gene_id "Ledus.S1G032600"
Ledus.S1	AUGUSTUS	start_codon	4505235	4505237	.	-	0	transcript_id "Ledus.S1G032600.t1"; gene_id "Ledus.S1G032600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12843.t1 is derived from g11877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	97856	98882	.	-	.	Ledus.C11G000700
Ledus.C11	AUGUSTUS	transcript	97856	98882	.	-	.	transcript_id "Ledus.C11G000700.t1"; gene_id "Ledus.C11G000700"
Ledus.C11	AUGUSTUS	stop_codon	97853	97855	.	-	0	transcript_id "Ledus.C11G000700.t1"; gene_id "Ledus.C11G000700"
Ledus.C11	AUGUSTUS	CDS	97856	97947	0.35	-	2	transcript_id "Ledus.C11G000700.t1"; gene_id "Ledus.C11G000700"
Ledus.C11	AUGUSTUS	exon	97856	97947	.	-	.	transcript_id "Ledus.C11G000700.t1"; gene_id "Ledus.C11G000700"
Ledus.C11	AUGUSTUS	intron	97948	98183	.	-	.	transcript_id "Ledus.C11G000700.t1"; gene_id "Ledus.C11G000700"
Ledus.C11	AUGUSTUS	CDS	98184	98329	0.45	-	1	transcript_id "Ledus.C11G000700.t1"; gene_id "Ledus.C11G000700"
Ledus.C11	AUGUSTUS	exon	98184	98329	.	-	.	transcript_id "Ledus.C11G000700.t1"; gene_id "Ledus.C11G000700"
Ledus.C11	AUGUSTUS	intron	98330	98430	.	-	.	transcript_id "Ledus.C11G000700.t1"; gene_id "Ledus.C11G000700"
Ledus.C11	AUGUSTUS	CDS	98431	98882	0.9	-	0	transcript_id "Ledus.C11G000700.t1"; gene_id "Ledus.C11G000700"
Ledus.C11	AUGUSTUS	exon	98431	98882	.	-	.	transcript_id "Ledus.C11G000700.t1"; gene_id "Ledus.C11G000700"
Ledus.C11	AUGUSTUS	start_codon	98880	98882	.	-	0	transcript_id "Ledus.C11G000700.t1"; gene_id "Ledus.C11G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4844.t1 is derived from g2282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20094190	20095273	.	-	.	Ledus.S1G226500
Ledus.S1	AUGUSTUS	transcript	20094190	20095273	.	-	.	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	stop_codon	20094187	20094189	.	-	0	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	CDS	20094190	20094301	0.43	-	1	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	exon	20094190	20094301	.	-	.	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	intron	20094302	20094409	.	-	.	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	CDS	20094410	20094545	0.84	-	2	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	exon	20094410	20094545	.	-	.	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	intron	20094546	20094667	.	-	.	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	CDS	20094668	20094768	0.57	-	1	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	exon	20094668	20094768	.	-	.	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	intron	20094769	20095235	.	-	.	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	CDS	20095236	20095273	0.63	-	0	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	exon	20095236	20095273	.	-	.	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
Ledus.S1	AUGUSTUS	start_codon	20095271	20095273	.	-	0	transcript_id "Ledus.S1G226500.t1"; gene_id "Ledus.S1G226500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10674.t1 is derived from g11704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17044454	17046290	.	-	.	Ledus.S3G215100
Ledus.S3	AUGUSTUS	transcript	17044454	17046290	.	-	.	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	stop_codon	17044451	17044453	.	-	0	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	CDS	17044454	17045053	0.99	-	0	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	exon	17044454	17045053	.	-	.	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	intron	17045054	17045143	.	-	.	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	CDS	17045144	17045314	1	-	0	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	exon	17045144	17045314	.	-	.	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	intron	17045315	17045398	.	-	.	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	CDS	17045399	17045494	1	-	0	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	exon	17045399	17045494	.	-	.	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	intron	17045495	17045581	.	-	.	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	CDS	17045582	17045841	1	-	2	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	exon	17045582	17045841	.	-	.	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	intron	17045842	17045920	.	-	.	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	CDS	17045921	17046290	0.54	-	0	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	exon	17045921	17046290	.	-	.	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
Ledus.S3	AUGUSTUS	start_codon	17046288	17046290	.	-	0	transcript_id "Ledus.S3G215100.t1"; gene_id "Ledus.S3G215100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg188.t1 is derived from g7049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	659351	661844	.	-	.	Ledus.S2G007000
Ledus.S2	AUGUSTUS	transcript	659351	661844	.	-	.	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	stop_codon	659348	659350	.	-	0	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	CDS	659351	659449	1	-	0	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	exon	659351	659449	.	-	.	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	intron	659450	659539	.	-	.	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	CDS	659540	659726	1	-	1	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	exon	659540	659726	.	-	.	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	intron	659727	659821	.	-	.	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	CDS	659822	659994	1	-	0	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	exon	659822	659994	.	-	.	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	intron	659995	660120	.	-	.	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	CDS	660121	660576	1	-	0	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	exon	660121	660576	.	-	.	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	intron	660577	660797	.	-	.	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	CDS	660798	661322	1	-	0	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	exon	660798	661322	.	-	.	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	intron	661323	661442	.	-	.	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	CDS	661443	661844	0.79	-	0	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	exon	661443	661844	.	-	.	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
Ledus.S2	AUGUSTUS	start_codon	661842	661844	.	-	0	transcript_id "Ledus.S2G007000.t1"; gene_id "Ledus.S2G007000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6933.t1 is derived from g4377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35636257	35641338	.	+	.	Ledus.S1G435400
Ledus.S1	AUGUSTUS	transcript	35636257	35641338	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	start_codon	35636257	35636259	.	+	0	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	CDS	35636257	35637129	1	+	0	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	exon	35636257	35637129	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	intron	35637130	35637227	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	CDS	35637228	35637767	1	+	0	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	exon	35637228	35637767	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	intron	35637768	35637931	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	CDS	35637932	35638252	1	+	0	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	exon	35637932	35638252	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	intron	35638253	35638337	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	CDS	35638338	35638424	1	+	0	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	exon	35638338	35638424	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	intron	35638425	35638569	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	CDS	35638570	35639370	0.94	+	0	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	exon	35638570	35639370	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	intron	35639371	35639472	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	CDS	35639473	35639637	0.95	+	0	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	exon	35639473	35639637	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	intron	35639638	35639734	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	CDS	35639735	35640029	1	+	0	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	exon	35639735	35640029	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	intron	35640030	35640130	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	CDS	35640131	35640345	1	+	2	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	exon	35640131	35640345	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	intron	35640346	35640456	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	CDS	35640457	35640762	0.98	+	0	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	exon	35640457	35640762	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	intron	35640763	35640841	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	CDS	35640842	35641145	1	+	0	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	exon	35640842	35641145	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	intron	35641146	35641234	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	CDS	35641235	35641338	0.98	+	2	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	exon	35641235	35641338	.	+	.	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
Ledus.S1	AUGUSTUS	stop_codon	35641339	35641341	.	+	0	transcript_id "Ledus.S1G435400.t1"; gene_id "Ledus.S1G435400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10050.t1 is derived from g11080.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12185078	12186634	.	-	.	Ledus.S3G152700
Ledus.S3	AUGUSTUS	transcript	12185565	12186634	.	-	.	transcript_id "Ledus.S3G152700.t1"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	stop_codon	12185562	12185564	.	-	0	transcript_id "Ledus.S3G152700.t1"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	CDS	12185565	12185587	0.55	-	2	transcript_id "Ledus.S3G152700.t1"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	exon	12185565	12185587	.	-	.	transcript_id "Ledus.S3G152700.t1"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	intron	12185588	12185697	.	-	.	transcript_id "Ledus.S3G152700.t1"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	CDS	12185698	12186634	0.47	-	0	transcript_id "Ledus.S3G152700.t1"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	exon	12185698	12186634	.	-	.	transcript_id "Ledus.S3G152700.t1"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	start_codon	12186632	12186634	.	-	0	transcript_id "Ledus.S3G152700.t1"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	transcript	12185078	12185911	.	-	.	transcript_id "Ledus.S3G152700.t2"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	stop_codon	12185075	12185077	.	-	0	transcript_id "Ledus.S3G152700.t2"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	CDS	12185078	12185911	0.98	-	0	transcript_id "Ledus.S3G152700.t2"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	exon	12185078	12185911	.	-	.	transcript_id "Ledus.S3G152700.t2"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	start_codon	12185909	12185911	.	-	0	transcript_id "Ledus.S3G152700.t2"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	transcript	12185078	12186634	.	-	.	transcript_id "Ledus.S3G152700.t3"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	stop_codon	12185075	12185077	.	-	0	transcript_id "Ledus.S3G152700.t3"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	CDS	12185078	12186634	0.88	-	0	transcript_id "Ledus.S3G152700.t3"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	exon	12185078	12186634	.	-	.	transcript_id "Ledus.S3G152700.t3"; gene_id "Ledus.S3G152700"
Ledus.S3	AUGUSTUS	start_codon	12186632	12186634	.	-	0	transcript_id "Ledus.S3G152700.t3"; gene_id "Ledus.S3G152700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9191.t1 is derived from g10221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5302198	5305165	.	-	.	Ledus.S3G066800
Ledus.S3	AUGUSTUS	transcript	5302198	5305165	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	stop_codon	5302195	5302197	.	-	0	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5302198	5302353	1	-	0	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5302198	5302353	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	intron	5302354	5302433	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5302434	5302536	1	-	1	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5302434	5302536	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	intron	5302537	5302628	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5302629	5302672	1	-	0	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5302629	5302672	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	intron	5302673	5302770	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5302771	5302847	1	-	2	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5302771	5302847	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	intron	5302848	5302966	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5302967	5303011	1	-	2	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5302967	5303011	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	intron	5303012	5303196	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5303197	5303305	1	-	0	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5303197	5303305	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	intron	5303306	5303387	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5303388	5303492	1	-	0	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5303388	5303492	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	intron	5303493	5303614	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5303615	5303780	1	-	1	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5303615	5303780	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	intron	5303781	5303905	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5303906	5304014	1	-	2	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5303906	5304014	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	intron	5304015	5304109	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5304110	5304147	1	-	1	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5304110	5304147	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	intron	5304148	5304304	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5304305	5304375	1	-	0	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5304305	5304375	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	intron	5304376	5304465	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5304466	5304642	1	-	0	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5304466	5304642	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	intron	5304643	5304769	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	CDS	5304770	5305165	0.99	-	0	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	exon	5304770	5305165	.	-	.	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
Ledus.S3	AUGUSTUS	start_codon	5305163	5305165	.	-	0	transcript_id "Ledus.S3G066800.t1"; gene_id "Ledus.S3G066800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10189.t1 is derived from g11219.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13495870	13496771	.	-	.	Ledus.S3G166600
Ledus.S3	AUGUSTUS	transcript	13495870	13496771	.	-	.	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	stop_codon	13495867	13495869	.	-	0	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	CDS	13495870	13495972	0.82	-	1	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	exon	13495870	13495972	.	-	.	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	intron	13495973	13496078	.	-	.	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	CDS	13496079	13496267	1	-	1	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	exon	13496079	13496267	.	-	.	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	intron	13496268	13496382	.	-	.	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	CDS	13496383	13496543	1	-	0	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	exon	13496383	13496543	.	-	.	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	intron	13496544	13496768	.	-	.	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	CDS	13496769	13496771	1	-	0	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	exon	13496769	13496771	.	-	.	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
Ledus.S3	AUGUSTUS	start_codon	13496769	13496771	.	-	0	transcript_id "Ledus.S3G166600.t1"; gene_id "Ledus.S3G166600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9605.t1 is derived from g10635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8326306	8327118	.	-	.	Ledus.S3G108200
Ledus.S3	AUGUSTUS	transcript	8326306	8327118	.	-	.	transcript_id "Ledus.S3G108200.t1"; gene_id "Ledus.S3G108200"
Ledus.S3	AUGUSTUS	stop_codon	8326303	8326305	.	-	0	transcript_id "Ledus.S3G108200.t1"; gene_id "Ledus.S3G108200"
Ledus.S3	AUGUSTUS	CDS	8326306	8327118	0.56	-	0	transcript_id "Ledus.S3G108200.t1"; gene_id "Ledus.S3G108200"
Ledus.S3	AUGUSTUS	exon	8326306	8327118	.	-	.	transcript_id "Ledus.S3G108200.t1"; gene_id "Ledus.S3G108200"
Ledus.S3	AUGUSTUS	start_codon	8327116	8327118	.	-	0	transcript_id "Ledus.S3G108200.t1"; gene_id "Ledus.S3G108200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4720.t1 is derived from g2158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19250752	19251336	.	-	.	Ledus.S1G214100
Ledus.S1	AUGUSTUS	transcript	19250752	19251336	.	-	.	transcript_id "Ledus.S1G214100.t1"; gene_id "Ledus.S1G214100"
Ledus.S1	AUGUSTUS	stop_codon	19250749	19250751	.	-	0	transcript_id "Ledus.S1G214100.t1"; gene_id "Ledus.S1G214100"
Ledus.S1	AUGUSTUS	CDS	19250752	19251035	0.8	-	2	transcript_id "Ledus.S1G214100.t1"; gene_id "Ledus.S1G214100"
Ledus.S1	AUGUSTUS	exon	19250752	19251035	.	-	.	transcript_id "Ledus.S1G214100.t1"; gene_id "Ledus.S1G214100"
Ledus.S1	AUGUSTUS	intron	19251036	19251188	.	-	.	transcript_id "Ledus.S1G214100.t1"; gene_id "Ledus.S1G214100"
Ledus.S1	AUGUSTUS	CDS	19251189	19251336	0.87	-	0	transcript_id "Ledus.S1G214100.t1"; gene_id "Ledus.S1G214100"
Ledus.S1	AUGUSTUS	exon	19251189	19251336	.	-	.	transcript_id "Ledus.S1G214100.t1"; gene_id "Ledus.S1G214100"
Ledus.S1	AUGUSTUS	start_codon	19251334	19251336	.	-	0	transcript_id "Ledus.S1G214100.t1"; gene_id "Ledus.S1G214100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5949.t1 is derived from g3392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28009023	28016053	.	+	.	Ledus.S1G337000
Ledus.S1	AUGUSTUS	transcript	28009023	28016053	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	start_codon	28009023	28009025	.	+	0	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	CDS	28009023	28009224	1	+	0	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	exon	28009023	28009224	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	intron	28009225	28010253	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	CDS	28010254	28010365	0.99	+	2	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	exon	28010254	28010365	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	intron	28010366	28010477	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	CDS	28010478	28010566	0.95	+	1	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	exon	28010478	28010566	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	intron	28010567	28010674	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	CDS	28010675	28010743	1	+	2	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	exon	28010675	28010743	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	intron	28010744	28010862	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	CDS	28010863	28010992	1	+	2	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	exon	28010863	28010992	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	intron	28010993	28011171	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	CDS	28011172	28011330	1	+	1	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	exon	28011172	28011330	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	intron	28011331	28011446	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	CDS	28011447	28011798	1	+	1	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	exon	28011447	28011798	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	intron	28011799	28012041	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	CDS	28012042	28012154	1	+	0	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	exon	28012042	28012154	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	intron	28012155	28012548	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	CDS	28012549	28012699	1	+	1	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	exon	28012549	28012699	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	intron	28012700	28012907	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	CDS	28012908	28013404	1	+	0	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	exon	28012908	28013404	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	intron	28013405	28013694	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	CDS	28013695	28013893	1	+	1	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	exon	28013695	28013893	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	intron	28013894	28014118	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	CDS	28014119	28016053	1	+	0	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	exon	28014119	28016053	.	+	.	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
Ledus.S1	AUGUSTUS	stop_codon	28016054	28016056	.	+	0	transcript_id "Ledus.S1G337000.t1"; gene_id "Ledus.S1G337000"
# This transcript jg11082.t2 is derived from g4700.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11083.t1 is derived from g4701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1679175	1681022	.	-	.	Ledus.S4G023900
Ledus.S4	AUGUSTUS	transcript	1679175	1681022	.	-	.	transcript_id "Ledus.S4G023900.t1"; gene_id "Ledus.S4G023900"
Ledus.S4	AUGUSTUS	stop_codon	1679172	1679174	.	-	0	transcript_id "Ledus.S4G023900.t1"; gene_id "Ledus.S4G023900"
Ledus.S4	AUGUSTUS	CDS	1679175	1681022	0.99	-	0	transcript_id "Ledus.S4G023900.t1"; gene_id "Ledus.S4G023900"
Ledus.S4	AUGUSTUS	exon	1679175	1681022	.	-	.	transcript_id "Ledus.S4G023900.t1"; gene_id "Ledus.S4G023900"
Ledus.S4	AUGUSTUS	start_codon	1681020	1681022	.	-	0	transcript_id "Ledus.S4G023900.t1"; gene_id "Ledus.S4G023900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11455.t1 is derived from g5073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4399091	4402191	.	+	.	Ledus.S4G061100
Ledus.S4	AUGUSTUS	transcript	4399091	4402191	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	start_codon	4399091	4399093	.	+	0	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	CDS	4399091	4399384	0.65	+	0	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	exon	4399091	4399384	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	intron	4399385	4399509	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	CDS	4399510	4399650	0.71	+	0	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	exon	4399510	4399650	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	intron	4399651	4399785	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	CDS	4399786	4399911	1	+	0	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	exon	4399786	4399911	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	intron	4399912	4400096	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	CDS	4400097	4400225	1	+	0	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	exon	4400097	4400225	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	intron	4400226	4400361	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	CDS	4400362	4400451	1	+	0	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	exon	4400362	4400451	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	intron	4400452	4400538	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	CDS	4400539	4400689	1	+	0	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	exon	4400539	4400689	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	intron	4400690	4400813	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	CDS	4400814	4400923	1	+	2	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	exon	4400814	4400923	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	intron	4400924	4401211	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	CDS	4401212	4401283	1	+	0	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	exon	4401212	4401283	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	intron	4401284	4401402	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	CDS	4401403	4401508	1	+	0	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	exon	4401403	4401508	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	intron	4401509	4401668	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	CDS	4401669	4401866	1	+	2	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	exon	4401669	4401866	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	intron	4401867	4401962	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	CDS	4401963	4402008	0.91	+	2	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	exon	4401963	4402008	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	intron	4402009	4402115	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	CDS	4402116	4402191	0.96	+	1	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	exon	4402116	4402191	.	+	.	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
Ledus.S4	AUGUSTUS	stop_codon	4402192	4402194	.	+	0	transcript_id "Ledus.S4G061100.t1"; gene_id "Ledus.S4G061100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11611.t1 is derived from g5229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5521070	5522523	.	-	.	Ledus.S4G076700
Ledus.S4	AUGUSTUS	transcript	5521070	5522523	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	stop_codon	5521067	5521069	.	-	0	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	CDS	5521070	5521177	1	-	0	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	exon	5521070	5521177	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	intron	5521178	5521332	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	CDS	5521333	5521389	1	-	0	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	exon	5521333	5521389	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	intron	5521390	5521513	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	CDS	5521514	5521546	1	-	0	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	exon	5521514	5521546	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	intron	5521547	5521667	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	CDS	5521668	5521760	1	-	0	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	exon	5521668	5521760	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	intron	5521761	5521984	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	CDS	5521985	5522072	1	-	1	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	exon	5521985	5522072	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	intron	5522073	5522212	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	CDS	5522213	5522236	1	-	1	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	exon	5522213	5522236	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	intron	5522237	5522365	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	CDS	5522366	5522523	0.99	-	0	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	exon	5522366	5522523	.	-	.	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
Ledus.S4	AUGUSTUS	start_codon	5522521	5522523	.	-	0	transcript_id "Ledus.S4G076700.t1"; gene_id "Ledus.S4G076700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2853.t1 is derived from g287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4203725	4206470	.	-	.	Ledus.S1G027400
Ledus.S1	AUGUSTUS	transcript	4203725	4206470	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	stop_codon	4203722	4203724	.	-	0	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	CDS	4203725	4204039	0.73	-	0	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	exon	4203725	4204039	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	intron	4204040	4204132	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	CDS	4204133	4204186	1	-	0	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	exon	4204133	4204186	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	intron	4204187	4204307	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	CDS	4204308	4204496	0.63	-	0	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	exon	4204308	4204496	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	intron	4204497	4204600	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	CDS	4204601	4204755	0.63	-	2	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	exon	4204601	4204755	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	intron	4204756	4204839	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	CDS	4204840	4204953	1	-	2	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	exon	4204840	4204953	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	intron	4204954	4205029	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	CDS	4205030	4205146	0.65	-	2	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	exon	4205030	4205146	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	intron	4205147	4205249	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	CDS	4205250	4205388	0.87	-	0	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	exon	4205250	4205388	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	intron	4205389	4205489	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	CDS	4205490	4205679	1	-	1	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	exon	4205490	4205679	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	intron	4205680	4205804	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	CDS	4205805	4205871	1	-	2	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	exon	4205805	4205871	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	intron	4205872	4205965	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	CDS	4205966	4206090	1	-	1	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	exon	4205966	4206090	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	intron	4206091	4206249	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	CDS	4206250	4206470	0.74	-	0	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	exon	4206250	4206470	.	-	.	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
Ledus.S1	AUGUSTUS	start_codon	4206468	4206470	.	-	0	transcript_id "Ledus.S1G027400.t1"; gene_id "Ledus.S1G027400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4895.t1 is derived from g2333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20563304	20563930	.	-	.	Ledus.S1G231600
Ledus.S1	AUGUSTUS	transcript	20563304	20563930	.	-	.	transcript_id "Ledus.S1G231600.t1"; gene_id "Ledus.S1G231600"
Ledus.S1	AUGUSTUS	stop_codon	20563301	20563303	.	-	0	transcript_id "Ledus.S1G231600.t1"; gene_id "Ledus.S1G231600"
Ledus.S1	AUGUSTUS	CDS	20563304	20563627	0.95	-	0	transcript_id "Ledus.S1G231600.t1"; gene_id "Ledus.S1G231600"
Ledus.S1	AUGUSTUS	exon	20563304	20563627	.	-	.	transcript_id "Ledus.S1G231600.t1"; gene_id "Ledus.S1G231600"
Ledus.S1	AUGUSTUS	intron	20563628	20563726	.	-	.	transcript_id "Ledus.S1G231600.t1"; gene_id "Ledus.S1G231600"
Ledus.S1	AUGUSTUS	CDS	20563727	20563930	0.9	-	0	transcript_id "Ledus.S1G231600.t1"; gene_id "Ledus.S1G231600"
Ledus.S1	AUGUSTUS	exon	20563727	20563930	.	-	.	transcript_id "Ledus.S1G231600.t1"; gene_id "Ledus.S1G231600"
Ledus.S1	AUGUSTUS	start_codon	20563928	20563930	.	-	0	transcript_id "Ledus.S1G231600.t1"; gene_id "Ledus.S1G231600"
# This transcript jg1592.t2 is derived from g8453.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1593.t1 is derived from g8454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11178705	11179439	.	+	.	Ledus.S2G147500
Ledus.S2	AUGUSTUS	transcript	11178705	11179439	.	+	.	transcript_id "Ledus.S2G147500.t1"; gene_id "Ledus.S2G147500"
Ledus.S2	AUGUSTUS	start_codon	11178705	11178707	.	+	0	transcript_id "Ledus.S2G147500.t1"; gene_id "Ledus.S2G147500"
Ledus.S2	AUGUSTUS	CDS	11178705	11179439	0.7	+	0	transcript_id "Ledus.S2G147500.t1"; gene_id "Ledus.S2G147500"
Ledus.S2	AUGUSTUS	exon	11178705	11179439	.	+	.	transcript_id "Ledus.S2G147500.t1"; gene_id "Ledus.S2G147500"
Ledus.S2	AUGUSTUS	stop_codon	11179440	11179442	.	+	0	transcript_id "Ledus.S2G147500.t1"; gene_id "Ledus.S2G147500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7836.t1 is derived from g12507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7391340	7393340	.	+	.	Ledus.S5G061400
Ledus.S5	AUGUSTUS	transcript	7391340	7393340	.	+	.	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	start_codon	7391340	7391342	.	+	0	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	CDS	7391340	7391374	0.7	+	0	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	exon	7391340	7391374	.	+	.	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	intron	7391375	7391637	.	+	.	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	CDS	7391638	7391879	1	+	1	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	exon	7391638	7391879	.	+	.	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	intron	7391880	7392452	.	+	.	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	CDS	7392453	7392556	1	+	2	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	exon	7392453	7392556	.	+	.	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	intron	7392557	7392679	.	+	.	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	CDS	7392680	7392787	1	+	0	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	exon	7392680	7392787	.	+	.	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	intron	7392788	7392989	.	+	.	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	CDS	7392990	7393091	1	+	0	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	exon	7392990	7393091	.	+	.	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	intron	7393092	7393172	.	+	.	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	CDS	7393173	7393340	1	+	0	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	exon	7393173	7393340	.	+	.	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
Ledus.S5	AUGUSTUS	stop_codon	7393341	7393343	.	+	0	transcript_id "Ledus.S5G061400.t1"; gene_id "Ledus.S5G061400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7156.t1 is derived from g6687.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1830650	1834520	.	+	.	Ledus.C7G021700
Ledus.C7	AUGUSTUS	transcript	1830650	1834520	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	start_codon	1830650	1830652	.	+	0	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1830650	1830761	1	+	0	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1830650	1830761	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	intron	1830762	1830835	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1830836	1831044	1	+	2	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1830836	1831044	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	intron	1831045	1831137	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1831138	1831316	0.99	+	0	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1831138	1831316	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	intron	1831317	1831400	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1831401	1831479	1	+	1	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1831401	1831479	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	intron	1831480	1831613	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1831614	1831748	1	+	0	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1831614	1831748	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	intron	1831749	1831876	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1831877	1832026	1	+	0	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1831877	1832026	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	intron	1832027	1832124	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1832125	1832884	0.88	+	0	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1832125	1832884	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	intron	1832885	1832970	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1832971	1832983	0.89	+	2	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1832971	1832983	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	intron	1832984	1833083	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1833084	1833165	0.88	+	1	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1833084	1833165	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	intron	1833166	1833283	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1833284	1833556	1	+	0	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1833284	1833556	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	intron	1833557	1833643	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1833644	1833853	1	+	0	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1833644	1833853	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	intron	1833854	1833947	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1833948	1834102	1	+	0	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1833948	1834102	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	intron	1834103	1834192	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	CDS	1834193	1834520	1	+	1	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	exon	1834193	1834520	.	+	.	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
Ledus.C7	AUGUSTUS	stop_codon	1834521	1834523	.	+	0	transcript_id "Ledus.C7G021700.t1"; gene_id "Ledus.C7G021700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10776.t1 is derived from g11808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17588914	17594025	.	+	.	Ledus.S3G225300
Ledus.S3	AUGUSTUS	transcript	17588914	17594025	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	start_codon	17588914	17588916	.	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17588914	17588941	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17588914	17588941	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17588942	17589318	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17589319	17589384	1	+	2	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17589319	17589384	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17589385	17589489	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17589490	17589542	1	+	2	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17589490	17589542	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17589543	17589626	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17589627	17590343	0.96	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17589627	17590343	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17590344	17590463	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17590464	17590526	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17590464	17590526	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17590527	17590703	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17590704	17590781	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17590704	17590781	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17590782	17590914	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17590915	17591118	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17590915	17591118	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17591119	17591233	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17591234	17591290	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17591234	17591290	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17591291	17591383	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17591384	17591458	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17591384	17591458	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17591459	17591592	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17591593	17591664	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17591593	17591664	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17591665	17591768	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17591769	17591831	0.98	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17591769	17591831	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17591832	17591952	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17591953	17592051	0.97	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17591953	17592051	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17592052	17592177	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17592178	17592253	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17592178	17592253	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17592254	17592436	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17592437	17592501	1	+	2	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17592437	17592501	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17592502	17592670	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17592671	17592718	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17592671	17592718	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17592719	17592823	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17592824	17592919	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17592824	17592919	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17592920	17593056	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17593057	17593133	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17593057	17593133	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17593134	17593418	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17593419	17593476	1	+	1	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17593419	17593476	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17593477	17593585	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17593586	17593678	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17593586	17593678	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17593679	17593811	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17593812	17593856	1	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17593812	17593856	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	intron	17593857	17593950	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	CDS	17593951	17594025	0.99	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	exon	17593951	17594025	.	+	.	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
Ledus.S3	AUGUSTUS	stop_codon	17594026	17594028	.	+	0	transcript_id "Ledus.S3G225300.t1"; gene_id "Ledus.S3G225300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1098.t1 is derived from g7959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7511764	7516456	.	-	.	Ledus.S2G098000
Ledus.S2	AUGUSTUS	transcript	7511764	7516456	.	-	.	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	stop_codon	7511761	7511763	.	-	0	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	CDS	7511764	7511880	1	-	0	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	exon	7511764	7511880	.	-	.	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	intron	7511881	7512399	.	-	.	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	CDS	7512400	7512538	0.01	-	1	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	exon	7512400	7512538	.	-	.	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	intron	7512539	7512629	.	-	.	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	CDS	7512630	7512686	0.8	-	1	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	exon	7512630	7512686	.	-	.	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	intron	7512687	7516094	.	-	.	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	CDS	7516095	7516456	0.01	-	0	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	exon	7516095	7516456	.	-	.	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
Ledus.S2	AUGUSTUS	start_codon	7516454	7516456	.	-	0	transcript_id "Ledus.S2G098000.t1"; gene_id "Ledus.S2G098000"
# This transcript jg7738.t2 is derived from g12409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7739.t1 is derived from g12410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5850401	5851655	.	-	.	Ledus.S5G051700
Ledus.S5	AUGUSTUS	transcript	5850401	5851655	.	-	.	transcript_id "Ledus.S5G051700.t1"; gene_id "Ledus.S5G051700"
Ledus.S5	AUGUSTUS	stop_codon	5850398	5850400	.	-	0	transcript_id "Ledus.S5G051700.t1"; gene_id "Ledus.S5G051700"
Ledus.S5	AUGUSTUS	CDS	5850401	5850654	0.59	-	2	transcript_id "Ledus.S5G051700.t1"; gene_id "Ledus.S5G051700"
Ledus.S5	AUGUSTUS	exon	5850401	5850654	.	-	.	transcript_id "Ledus.S5G051700.t1"; gene_id "Ledus.S5G051700"
Ledus.S5	AUGUSTUS	intron	5850655	5850747	.	-	.	transcript_id "Ledus.S5G051700.t1"; gene_id "Ledus.S5G051700"
Ledus.S5	AUGUSTUS	CDS	5850748	5850837	0.43	-	2	transcript_id "Ledus.S5G051700.t1"; gene_id "Ledus.S5G051700"
Ledus.S5	AUGUSTUS	exon	5850748	5850837	.	-	.	transcript_id "Ledus.S5G051700.t1"; gene_id "Ledus.S5G051700"
Ledus.S5	AUGUSTUS	intron	5850838	5851249	.	-	.	transcript_id "Ledus.S5G051700.t1"; gene_id "Ledus.S5G051700"
Ledus.S5	AUGUSTUS	CDS	5851250	5851655	0.77	-	0	transcript_id "Ledus.S5G051700.t1"; gene_id "Ledus.S5G051700"
Ledus.S5	AUGUSTUS	exon	5851250	5851655	.	-	.	transcript_id "Ledus.S5G051700.t1"; gene_id "Ledus.S5G051700"
Ledus.S5	AUGUSTUS	start_codon	5851653	5851655	.	-	0	transcript_id "Ledus.S5G051700.t1"; gene_id "Ledus.S5G051700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg217.t1 is derived from g7078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	947910	957583	.	+	.	Ledus.S2G009900
Ledus.S2	AUGUSTUS	transcript	947910	957583	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	start_codon	947910	947912	.	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	947910	947987	0.85	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	947910	947987	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	947988	948514	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	948515	948536	0.81	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	948515	948536	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	948537	948811	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	948812	948823	0.58	+	2	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	948812	948823	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	948824	948944	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	948945	948964	0.81	+	2	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	948945	948964	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	948965	949046	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	949047	949121	0.82	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	949047	949121	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	949122	949271	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	949272	949397	0.8	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	949272	949397	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	949398	949498	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	949499	949617	0.89	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	949499	949617	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	949618	949762	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	949763	949832	0.98	+	1	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	949763	949832	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	949833	949939	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	949940	950194	0.96	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	949940	950194	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	950195	950287	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	950288	950357	1	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	950288	950357	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	950358	950573	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	950574	950640	1	+	2	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	950574	950640	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	950641	950781	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	950782	950867	0.96	+	1	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	950782	950867	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	950868	950979	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	950980	951085	0.99	+	2	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	950980	951085	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	951086	951223	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	951224	951321	0.99	+	1	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	951224	951321	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	951322	951433	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	951434	951500	1	+	2	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	951434	951500	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	951501	951645	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	951646	951763	1	+	1	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	951646	951763	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	951764	951896	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	951897	952013	1	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	951897	952013	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	952014	952157	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	952158	952238	0.99	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	952158	952238	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	952239	952358	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	952359	952646	0.77	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	952359	952646	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	952647	952793	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	952794	952895	1	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	952794	952895	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	952896	953114	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	953115	953182	1	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	953115	953182	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	953183	953279	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	953280	953411	1	+	1	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	953280	953411	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	953412	953570	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	953571	953718	0.99	+	1	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	953571	953718	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	953719	953845	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	953846	954267	0.91	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	953846	954267	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	954268	954423	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	954424	954580	1	+	1	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	954424	954580	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	954581	954711	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	954712	954887	1	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	954712	954887	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	954888	955021	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	955022	955133	1	+	1	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	955022	955133	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	955134	955285	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	955286	955339	1	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	955286	955339	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	955340	955457	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	955458	955580	1	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	955458	955580	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	955581	955753	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	955754	955852	0.97	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	955754	955852	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	955853	955961	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	955962	956054	1	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	955962	956054	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	956055	956201	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	956202	956312	1	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	956202	956312	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	956313	956395	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	956396	956557	1	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	956396	956557	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	956558	956644	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	956645	956832	1	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	956645	956832	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	956833	956919	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	956920	957109	1	+	1	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	956920	957109	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	957110	957225	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	957226	957393	0.85	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	957226	957393	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	957394	957505	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	957506	957583	0.83	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	957506	957583	.	+	.	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	stop_codon	957584	957586	.	+	0	transcript_id "Ledus.S2G009900.t1"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	transcript	947910	957583	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	start_codon	947910	947912	.	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	947910	947987	0.89	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	947910	947987	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	947988	948514	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	948515	948536	0.78	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	948515	948536	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	948537	948811	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	948812	948823	0.56	+	2	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	948812	948823	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	948824	948944	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	948945	948964	0.76	+	2	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	948945	948964	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	948965	949046	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	949047	949121	0.76	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	949047	949121	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	949122	949271	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	949272	949397	0.83	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	949272	949397	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	949398	949498	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	949499	949617	0.89	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	949499	949617	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	949618	949762	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	949763	949832	0.95	+	1	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	949763	949832	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	949833	949939	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	949940	950194	0.9	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	949940	950194	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	950195	950287	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	950288	950357	1	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	950288	950357	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	950358	950573	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	950574	950640	1	+	2	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	950574	950640	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	950641	950781	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	950782	950867	1	+	1	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	950782	950867	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	950868	951291	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	951292	951321	1	+	2	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	951292	951321	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	951322	951433	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	951434	951500	1	+	2	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	951434	951500	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	951501	951645	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	951646	951763	1	+	1	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	951646	951763	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	951764	951896	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	951897	952013	1	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	951897	952013	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	952014	952157	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	952158	952238	0.99	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	952158	952238	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	952239	952358	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	952359	952646	0.73	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	952359	952646	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
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Ledus.S2	AUGUSTUS	CDS	952794	952895	1	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	952794	952895	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
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Ledus.S2	AUGUSTUS	CDS	953280	953411	1	+	1	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	953280	953411	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
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Ledus.S2	AUGUSTUS	CDS	953571	953718	0.98	+	1	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	953571	953718	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	953719	953845	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	953846	954267	0.83	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	953846	954267	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	954268	954423	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	954424	954580	0.99	+	1	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	954424	954580	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	954581	954711	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	954712	954887	1	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	954712	954887	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	954888	955021	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	955022	955133	1	+	1	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	955022	955133	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	955134	955285	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	955286	955339	1	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	955286	955339	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	955340	955457	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	955458	955580	1	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	955458	955580	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	955581	955753	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	955754	955852	0.99	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	955754	955852	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	955853	955961	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	955962	956054	1	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	955962	956054	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	956055	956201	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	956202	956312	1	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	956202	956312	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	956313	956395	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	956396	956557	1	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	956396	956557	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	956558	956644	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	956645	956832	1	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	956645	956832	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	956833	956919	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	956920	957109	1	+	1	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	956920	957109	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	957110	957225	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	957226	957393	0.82	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	957226	957393	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	intron	957394	957505	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	CDS	957506	957583	0.83	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	exon	957506	957583	.	+	.	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
Ledus.S2	AUGUSTUS	stop_codon	957584	957586	.	+	0	transcript_id "Ledus.S2G009900.t2"; gene_id "Ledus.S2G009900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4422.t1 is derived from g1858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17037070	17038021	.	-	.	Ledus.S1G184300
Ledus.S1	AUGUSTUS	transcript	17037070	17038021	.	-	.	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	stop_codon	17037067	17037069	.	-	0	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	CDS	17037070	17037339	1	-	0	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	exon	17037070	17037339	.	-	.	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	intron	17037340	17037413	.	-	.	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	CDS	17037414	17037680	1	-	0	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	exon	17037414	17037680	.	-	.	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	intron	17037681	17037773	.	-	.	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	CDS	17037774	17037827	1	-	0	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	exon	17037774	17037827	.	-	.	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	intron	17037828	17037904	.	-	.	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	CDS	17037905	17038021	0.64	-	0	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	exon	17037905	17038021	.	-	.	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
Ledus.S1	AUGUSTUS	start_codon	17038019	17038021	.	-	0	transcript_id "Ledus.S1G184300.t1"; gene_id "Ledus.S1G184300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9616.t1 is derived from g10646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8424063	8426476	.	+	.	Ledus.S3G109300
Ledus.S3	AUGUSTUS	transcript	8424063	8426476	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	start_codon	8424063	8424065	.	+	0	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	CDS	8424063	8424214	1	+	0	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	exon	8424063	8424214	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	intron	8424215	8424297	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	CDS	8424298	8424490	1	+	1	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	exon	8424298	8424490	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	intron	8424491	8424573	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	CDS	8424574	8424687	1	+	0	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	exon	8424574	8424687	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	intron	8424688	8424783	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	CDS	8424784	8424886	1	+	0	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	exon	8424784	8424886	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	intron	8424887	8424965	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	CDS	8424966	8425167	1	+	2	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	exon	8424966	8425167	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	intron	8425168	8425269	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	CDS	8425270	8425366	1	+	1	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	exon	8425270	8425366	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	intron	8425367	8425460	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	CDS	8425461	8425527	0.75	+	0	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	exon	8425461	8425527	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	intron	8425528	8425607	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	CDS	8425608	8425750	0.96	+	2	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	exon	8425608	8425750	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	intron	8425751	8425832	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	CDS	8425833	8425922	1	+	0	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	exon	8425833	8425922	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	intron	8425923	8426009	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	CDS	8426010	8426057	1	+	0	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	exon	8426010	8426057	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	intron	8426058	8426137	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	CDS	8426138	8426289	1	+	0	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	exon	8426138	8426289	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	intron	8426290	8426364	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	CDS	8426365	8426476	0.98	+	1	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	exon	8426365	8426476	.	+	.	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
Ledus.S3	AUGUSTUS	stop_codon	8426477	8426479	.	+	0	transcript_id "Ledus.S3G109300.t1"; gene_id "Ledus.S3G109300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1762.t1 is derived from g8624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12397008	12401679	.	+	.	Ledus.S2G164400
Ledus.S2	AUGUSTUS	transcript	12397008	12401679	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	start_codon	12397008	12397010	.	+	0	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12397008	12397213	0.99	+	0	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12397008	12397213	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12397214	12397519	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12397520	12397652	1	+	1	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12397520	12397652	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12397653	12397910	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12397911	12398057	1	+	0	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12397911	12398057	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12398058	12398183	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12398184	12398360	1	+	0	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12398184	12398360	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12398361	12398778	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12398779	12399033	1	+	0	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12398779	12399033	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12399034	12399221	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12399222	12399290	0.99	+	0	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12399222	12399290	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12399291	12399403	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12399404	12399459	1	+	0	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12399404	12399459	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12399460	12399733	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12399734	12399815	1	+	1	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12399734	12399815	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12399816	12400096	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12400097	12400308	0.99	+	0	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12400097	12400308	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12400309	12400415	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12400416	12400485	0.99	+	1	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12400416	12400485	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12400486	12400733	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12400734	12400846	1	+	0	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12400734	12400846	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12400847	12401097	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12401098	12401248	1	+	1	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12401098	12401248	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12401249	12401334	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12401335	12401521	1	+	0	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12401335	12401521	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	intron	12401522	12401608	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	CDS	12401609	12401679	0.93	+	2	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	exon	12401609	12401679	.	+	.	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
Ledus.S2	AUGUSTUS	stop_codon	12401680	12401682	.	+	0	transcript_id "Ledus.S2G164400.t1"; gene_id "Ledus.S2G164400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9118.t1 is derived from g10148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4673694	4676136	.	-	.	Ledus.S3G059500
Ledus.S3	AUGUSTUS	transcript	4673694	4676136	.	-	.	transcript_id "Ledus.S3G059500.t1"; gene_id "Ledus.S3G059500"
Ledus.S3	AUGUSTUS	stop_codon	4673691	4673693	.	-	0	transcript_id "Ledus.S3G059500.t1"; gene_id "Ledus.S3G059500"
Ledus.S3	AUGUSTUS	CDS	4673694	4675958	1	-	0	transcript_id "Ledus.S3G059500.t1"; gene_id "Ledus.S3G059500"
Ledus.S3	AUGUSTUS	exon	4673694	4675958	.	-	.	transcript_id "Ledus.S3G059500.t1"; gene_id "Ledus.S3G059500"
Ledus.S3	AUGUSTUS	intron	4675959	4676052	.	-	.	transcript_id "Ledus.S3G059500.t1"; gene_id "Ledus.S3G059500"
Ledus.S3	AUGUSTUS	CDS	4676053	4676136	0.29	-	0	transcript_id "Ledus.S3G059500.t1"; gene_id "Ledus.S3G059500"
Ledus.S3	AUGUSTUS	exon	4676053	4676136	.	-	.	transcript_id "Ledus.S3G059500.t1"; gene_id "Ledus.S3G059500"
Ledus.S3	AUGUSTUS	start_codon	4676134	4676136	.	-	0	transcript_id "Ledus.S3G059500.t1"; gene_id "Ledus.S3G059500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8094.t1 is derived from g12765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9114533	9118620	.	+	.	Ledus.S5G087200
Ledus.S5	AUGUSTUS	transcript	9114533	9118620	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	start_codon	9114533	9114535	.	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9114533	9114724	0.99	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9114533	9114724	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9114725	9114813	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9114814	9114967	1	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9114814	9114967	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9114968	9115142	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9115143	9115210	1	+	2	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9115143	9115210	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9115211	9115311	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9115312	9115413	0.99	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9115312	9115413	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9115414	9115536	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9115537	9115689	1	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9115537	9115689	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9115690	9115786	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9115787	9115864	1	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9115787	9115864	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9115865	9115994	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9115995	9116120	1	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9115995	9116120	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9116121	9116213	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9116214	9116316	1	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9116214	9116316	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9116317	9116436	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9116437	9116537	1	+	2	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9116437	9116537	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9116538	9116633	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9116634	9117077	1	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9116634	9117077	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9117078	9117163	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9117164	9117277	1	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9117164	9117277	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9117278	9117358	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9117359	9117435	0.47	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9117359	9117435	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9117436	9117734	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9117735	9117807	0.87	+	1	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9117735	9117807	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9117808	9117933	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9117934	9117950	1	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9117934	9117950	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9117951	9118047	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9118048	9118267	0.85	+	1	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9118048	9118267	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	intron	9118268	9118368	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	CDS	9118369	9118620	0.9	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	exon	9118369	9118620	.	+	.	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
Ledus.S5	AUGUSTUS	stop_codon	9118621	9118623	.	+	0	transcript_id "Ledus.S5G087200.t1"; gene_id "Ledus.S5G087200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5268.t1 is derived from g2707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22794994	22795644	.	+	.	Ledus.S1G268900
Ledus.S1	AUGUSTUS	transcript	22794994	22795644	.	+	.	transcript_id "Ledus.S1G268900.t1"; gene_id "Ledus.S1G268900"
Ledus.S1	AUGUSTUS	start_codon	22794994	22794996	.	+	0	transcript_id "Ledus.S1G268900.t1"; gene_id "Ledus.S1G268900"
Ledus.S1	AUGUSTUS	CDS	22794994	22795644	1	+	0	transcript_id "Ledus.S1G268900.t1"; gene_id "Ledus.S1G268900"
Ledus.S1	AUGUSTUS	exon	22794994	22795644	.	+	.	transcript_id "Ledus.S1G268900.t1"; gene_id "Ledus.S1G268900"
Ledus.S1	AUGUSTUS	stop_codon	22795645	22795647	.	+	0	transcript_id "Ledus.S1G268900.t1"; gene_id "Ledus.S1G268900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12844.t1 is derived from g11878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	121272	121502	.	+	.	Ledus.C11G000800
Ledus.C11	AUGUSTUS	transcript	121272	121502	.	+	.	transcript_id "Ledus.C11G000800.t1"; gene_id "Ledus.C11G000800"
Ledus.C11	AUGUSTUS	start_codon	121272	121274	.	+	0	transcript_id "Ledus.C11G000800.t1"; gene_id "Ledus.C11G000800"
Ledus.C11	AUGUSTUS	CDS	121272	121502	0.96	+	0	transcript_id "Ledus.C11G000800.t1"; gene_id "Ledus.C11G000800"
Ledus.C11	AUGUSTUS	exon	121272	121502	.	+	.	transcript_id "Ledus.C11G000800.t1"; gene_id "Ledus.C11G000800"
Ledus.C11	AUGUSTUS	stop_codon	121503	121505	.	+	0	transcript_id "Ledus.C11G000800.t1"; gene_id "Ledus.C11G000800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12937.t1 is derived from g4429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	450554	451231	.	-	.	Ledus.C9G004500
Ledus.C9	AUGUSTUS	transcript	450554	451231	.	-	.	transcript_id "Ledus.C9G004500.t1"; gene_id "Ledus.C9G004500"
Ledus.C9	AUGUSTUS	stop_codon	450551	450553	.	-	0	transcript_id "Ledus.C9G004500.t1"; gene_id "Ledus.C9G004500"
Ledus.C9	AUGUSTUS	CDS	450554	451231	0.53	-	0	transcript_id "Ledus.C9G004500.t1"; gene_id "Ledus.C9G004500"
Ledus.C9	AUGUSTUS	exon	450554	451231	.	-	.	transcript_id "Ledus.C9G004500.t1"; gene_id "Ledus.C9G004500"
Ledus.C9	AUGUSTUS	start_codon	451229	451231	.	-	0	transcript_id "Ledus.C9G004500.t1"; gene_id "Ledus.C9G004500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3917.t1 is derived from g1353.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13547717	13548761	.	+	.	Ledus.S1G133800
Ledus.S1	AUGUSTUS	transcript	13547717	13548742	.	+	.	transcript_id "Ledus.S1G133800.t1"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	start_codon	13547717	13547719	.	+	0	transcript_id "Ledus.S1G133800.t1"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	CDS	13547717	13547994	0.16	+	0	transcript_id "Ledus.S1G133800.t1"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	exon	13547717	13547994	.	+	.	transcript_id "Ledus.S1G133800.t1"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	intron	13547995	13548355	.	+	.	transcript_id "Ledus.S1G133800.t1"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	CDS	13548356	13548497	0.24	+	1	transcript_id "Ledus.S1G133800.t1"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	exon	13548356	13548497	.	+	.	transcript_id "Ledus.S1G133800.t1"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	intron	13548498	13548721	.	+	.	transcript_id "Ledus.S1G133800.t1"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	CDS	13548722	13548742	0.81	+	0	transcript_id "Ledus.S1G133800.t1"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	exon	13548722	13548742	.	+	.	transcript_id "Ledus.S1G133800.t1"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	stop_codon	13548743	13548745	.	+	0	transcript_id "Ledus.S1G133800.t1"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	transcript	13547717	13548761	.	+	.	transcript_id "Ledus.S1G133800.t2"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	start_codon	13547717	13547719	.	+	0	transcript_id "Ledus.S1G133800.t2"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	CDS	13547717	13547994	0.22	+	0	transcript_id "Ledus.S1G133800.t2"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	exon	13547717	13547994	.	+	.	transcript_id "Ledus.S1G133800.t2"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	intron	13547995	13548317	.	+	.	transcript_id "Ledus.S1G133800.t2"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	CDS	13548318	13548422	0.26	+	1	transcript_id "Ledus.S1G133800.t2"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	exon	13548318	13548422	.	+	.	transcript_id "Ledus.S1G133800.t2"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	intron	13548423	13548721	.	+	.	transcript_id "Ledus.S1G133800.t2"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	CDS	13548722	13548761	0.65	+	1	transcript_id "Ledus.S1G133800.t2"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	exon	13548722	13548761	.	+	.	transcript_id "Ledus.S1G133800.t2"; gene_id "Ledus.S1G133800"
Ledus.S1	AUGUSTUS	stop_codon	13548762	13548764	.	+	0	transcript_id "Ledus.S1G133800.t2"; gene_id "Ledus.S1G133800"
# This transcript jg11259.t2 is derived from g4877.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11260.t1 is derived from g4878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2990009	2991530	.	-	.	Ledus.S4G041600
Ledus.S4	AUGUSTUS	transcript	2990009	2991530	.	-	.	transcript_id "Ledus.S4G041600.t1"; gene_id "Ledus.S4G041600"
Ledus.S4	AUGUSTUS	stop_codon	2990006	2990008	.	-	0	transcript_id "Ledus.S4G041600.t1"; gene_id "Ledus.S4G041600"
Ledus.S4	AUGUSTUS	CDS	2990009	2990748	1	-	2	transcript_id "Ledus.S4G041600.t1"; gene_id "Ledus.S4G041600"
Ledus.S4	AUGUSTUS	exon	2990009	2990748	.	-	.	transcript_id "Ledus.S4G041600.t1"; gene_id "Ledus.S4G041600"
Ledus.S4	AUGUSTUS	intron	2990749	2990831	.	-	.	transcript_id "Ledus.S4G041600.t1"; gene_id "Ledus.S4G041600"
Ledus.S4	AUGUSTUS	CDS	2990832	2991263	1	-	2	transcript_id "Ledus.S4G041600.t1"; gene_id "Ledus.S4G041600"
Ledus.S4	AUGUSTUS	exon	2990832	2991263	.	-	.	transcript_id "Ledus.S4G041600.t1"; gene_id "Ledus.S4G041600"
Ledus.S4	AUGUSTUS	intron	2991264	2991352	.	-	.	transcript_id "Ledus.S4G041600.t1"; gene_id "Ledus.S4G041600"
Ledus.S4	AUGUSTUS	CDS	2991353	2991530	0.8	-	0	transcript_id "Ledus.S4G041600.t1"; gene_id "Ledus.S4G041600"
Ledus.S4	AUGUSTUS	exon	2991353	2991530	.	-	.	transcript_id "Ledus.S4G041600.t1"; gene_id "Ledus.S4G041600"
Ledus.S4	AUGUSTUS	start_codon	2991528	2991530	.	-	0	transcript_id "Ledus.S4G041600.t1"; gene_id "Ledus.S4G041600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5683.t1 is derived from g3122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25786936	25788400	.	+	.	Ledus.S1G310400
Ledus.S1	AUGUSTUS	transcript	25786936	25788400	.	+	.	transcript_id "Ledus.S1G310400.t1"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	start_codon	25786936	25786938	.	+	0	transcript_id "Ledus.S1G310400.t1"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	CDS	25786936	25787621	0.58	+	0	transcript_id "Ledus.S1G310400.t1"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	exon	25786936	25787621	.	+	.	transcript_id "Ledus.S1G310400.t1"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	intron	25787622	25787706	.	+	.	transcript_id "Ledus.S1G310400.t1"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	CDS	25787707	25788400	0.99	+	1	transcript_id "Ledus.S1G310400.t1"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	exon	25787707	25788400	.	+	.	transcript_id "Ledus.S1G310400.t1"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	stop_codon	25788401	25788403	.	+	0	transcript_id "Ledus.S1G310400.t1"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	transcript	25786936	25787440	.	+	.	transcript_id "Ledus.S1G310400.t2"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	start_codon	25786936	25786938	.	+	0	transcript_id "Ledus.S1G310400.t2"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	CDS	25786936	25787346	0.39	+	0	transcript_id "Ledus.S1G310400.t2"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	exon	25786936	25787346	.	+	.	transcript_id "Ledus.S1G310400.t2"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	intron	25787347	25787434	.	+	.	transcript_id "Ledus.S1G310400.t2"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	CDS	25787435	25787440	0.95	+	0	transcript_id "Ledus.S1G310400.t2"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	exon	25787435	25787440	.	+	.	transcript_id "Ledus.S1G310400.t2"; gene_id "Ledus.S1G310400"
Ledus.S1	AUGUSTUS	stop_codon	25787441	25787443	.	+	0	transcript_id "Ledus.S1G310400.t2"; gene_id "Ledus.S1G310400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5727.t1 is derived from g3166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26273972	26274304	.	-	.	Ledus.S1G314800
Ledus.S1	AUGUSTUS	transcript	26273972	26274304	.	-	.	transcript_id "Ledus.S1G314800.t1"; gene_id "Ledus.S1G314800"
Ledus.S1	AUGUSTUS	stop_codon	26273969	26273971	.	-	0	transcript_id "Ledus.S1G314800.t1"; gene_id "Ledus.S1G314800"
Ledus.S1	AUGUSTUS	CDS	26273972	26274304	0.57	-	0	transcript_id "Ledus.S1G314800.t1"; gene_id "Ledus.S1G314800"
Ledus.S1	AUGUSTUS	exon	26273972	26274304	.	-	.	transcript_id "Ledus.S1G314800.t1"; gene_id "Ledus.S1G314800"
Ledus.S1	AUGUSTUS	start_codon	26274302	26274304	.	-	0	transcript_id "Ledus.S1G314800.t1"; gene_id "Ledus.S1G314800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2925.t1 is derived from g360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4604344	4606017	.	+	.	Ledus.S1G034600
Ledus.S1	AUGUSTUS	transcript	4604344	4606017	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	start_codon	4604344	4604346	.	+	0	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	CDS	4604344	4604437	0.98	+	0	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	exon	4604344	4604437	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	intron	4604438	4604528	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	CDS	4604529	4604681	1	+	2	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	exon	4604529	4604681	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	intron	4604682	4604769	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	CDS	4604770	4604985	1	+	2	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	exon	4604770	4604985	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	intron	4604986	4605071	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	CDS	4605072	4605157	1	+	2	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	exon	4605072	4605157	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	intron	4605158	4605248	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	CDS	4605249	4605313	1	+	0	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	exon	4605249	4605313	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	intron	4605314	4605413	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	CDS	4605414	4605528	1	+	1	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	exon	4605414	4605528	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	intron	4605529	4605625	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	CDS	4605626	4605679	1	+	0	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	exon	4605626	4605679	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	intron	4605680	4605758	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	CDS	4605759	4605818	1	+	0	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	exon	4605759	4605818	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	intron	4605819	4605900	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	CDS	4605901	4606017	0.43	+	0	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	exon	4605901	4606017	.	+	.	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
Ledus.S1	AUGUSTUS	stop_codon	4606018	4606020	.	+	0	transcript_id "Ledus.S1G034600.t1"; gene_id "Ledus.S1G034600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9155.t1 is derived from g10185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4905089	4908925	.	-	.	Ledus.S3G063200
Ledus.S3	AUGUSTUS	transcript	4905089	4908925	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	stop_codon	4905086	4905088	.	-	0	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	CDS	4905089	4905631	1	-	0	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	exon	4905089	4905631	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	intron	4905632	4905712	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	CDS	4905713	4906072	0.99	-	0	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	exon	4905713	4906072	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	intron	4906073	4906167	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	CDS	4906168	4906452	0.99	-	0	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	exon	4906168	4906452	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	intron	4906453	4906570	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	CDS	4906571	4906645	0.92	-	0	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	exon	4906571	4906645	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	intron	4906646	4906744	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	CDS	4906745	4906899	1	-	2	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	exon	4906745	4906899	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	intron	4906900	4906995	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	CDS	4906996	4907112	1	-	2	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	exon	4906996	4907112	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	intron	4907113	4907199	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	CDS	4907200	4907565	0.49	-	2	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	exon	4907200	4907565	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	intron	4907566	4907855	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	CDS	4907856	4908070	0.56	-	1	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	exon	4907856	4908070	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	intron	4908071	4908145	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	CDS	4908146	4908401	0.68	-	2	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	exon	4908146	4908401	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	intron	4908402	4908486	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	CDS	4908487	4908728	0.37	-	1	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	exon	4908487	4908728	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	intron	4908729	4908830	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	CDS	4908831	4908925	0.32	-	0	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	exon	4908831	4908925	.	-	.	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
Ledus.S3	AUGUSTUS	start_codon	4908923	4908925	.	-	0	transcript_id "Ledus.S3G063200.t1"; gene_id "Ledus.S3G063200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10761.t1 is derived from g11793.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17519659	17521607	.	-	.	Ledus.S3G223800
Ledus.S3	AUGUSTUS	transcript	17519659	17521607	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	stop_codon	17519656	17519658	.	-	0	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17519659	17519664	0.95	-	0	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17519659	17519664	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	intron	17519665	17519800	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17519801	17520187	0.61	-	0	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17519801	17520187	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	intron	17520188	17520271	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17520272	17520442	1	-	0	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17520272	17520442	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	intron	17520443	17520572	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17520573	17520659	1	-	0	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17520573	17520659	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	intron	17520660	17520809	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17520810	17520892	0.63	-	2	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17520810	17520892	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	intron	17520893	17521029	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17521030	17521068	0.43	-	2	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17521030	17521068	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	intron	17521069	17521183	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17521184	17521607	0.89	-	0	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17521184	17521607	.	-	.	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	start_codon	17521605	17521607	.	-	0	transcript_id "Ledus.S3G223800.t1"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	transcript	17519659	17521607	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	stop_codon	17519656	17519658	.	-	0	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17519659	17519664	0.44	-	0	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17519659	17519664	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	intron	17519665	17519803	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17519804	17520187	0.26	-	0	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17519804	17520187	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	intron	17520188	17520271	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17520272	17520442	1	-	0	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17520272	17520442	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	intron	17520443	17520572	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17520573	17520659	1	-	0	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17520573	17520659	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	intron	17520660	17520809	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17520810	17520892	0.75	-	2	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17520810	17520892	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	intron	17520893	17521029	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17521030	17521068	0.47	-	2	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17521030	17521068	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	intron	17521069	17521183	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	CDS	17521184	17521607	0.9	-	0	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	exon	17521184	17521607	.	-	.	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
Ledus.S3	AUGUSTUS	start_codon	17521605	17521607	.	-	0	transcript_id "Ledus.S3G223800.t2"; gene_id "Ledus.S3G223800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9638.t1 is derived from g10668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8559762	8561682	.	+	.	Ledus.S3G111500
Ledus.S3	AUGUSTUS	transcript	8559762	8561682	.	+	.	transcript_id "Ledus.S3G111500.t1"; gene_id "Ledus.S3G111500"
Ledus.S3	AUGUSTUS	start_codon	8559762	8559764	.	+	0	transcript_id "Ledus.S3G111500.t1"; gene_id "Ledus.S3G111500"
Ledus.S3	AUGUSTUS	CDS	8559762	8560338	0.99	+	0	transcript_id "Ledus.S3G111500.t1"; gene_id "Ledus.S3G111500"
Ledus.S3	AUGUSTUS	exon	8559762	8560338	.	+	.	transcript_id "Ledus.S3G111500.t1"; gene_id "Ledus.S3G111500"
Ledus.S3	AUGUSTUS	intron	8560339	8560928	.	+	.	transcript_id "Ledus.S3G111500.t1"; gene_id "Ledus.S3G111500"
Ledus.S3	AUGUSTUS	CDS	8560929	8561086	1	+	2	transcript_id "Ledus.S3G111500.t1"; gene_id "Ledus.S3G111500"
Ledus.S3	AUGUSTUS	exon	8560929	8561086	.	+	.	transcript_id "Ledus.S3G111500.t1"; gene_id "Ledus.S3G111500"
Ledus.S3	AUGUSTUS	intron	8561087	8561469	.	+	.	transcript_id "Ledus.S3G111500.t1"; gene_id "Ledus.S3G111500"
Ledus.S3	AUGUSTUS	CDS	8561470	8561682	0.97	+	0	transcript_id "Ledus.S3G111500.t1"; gene_id "Ledus.S3G111500"
Ledus.S3	AUGUSTUS	exon	8561470	8561682	.	+	.	transcript_id "Ledus.S3G111500.t1"; gene_id "Ledus.S3G111500"
Ledus.S3	AUGUSTUS	stop_codon	8561683	8561685	.	+	0	transcript_id "Ledus.S3G111500.t1"; gene_id "Ledus.S3G111500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4187.t1 is derived from g1623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15247522	15248106	.	-	.	Ledus.S1G160800
Ledus.S1	AUGUSTUS	transcript	15247522	15248106	.	-	.	transcript_id "Ledus.S1G160800.t1"; gene_id "Ledus.S1G160800"
Ledus.S1	AUGUSTUS	stop_codon	15247519	15247521	.	-	0	transcript_id "Ledus.S1G160800.t1"; gene_id "Ledus.S1G160800"
Ledus.S1	AUGUSTUS	CDS	15247522	15248106	1	-	0	transcript_id "Ledus.S1G160800.t1"; gene_id "Ledus.S1G160800"
Ledus.S1	AUGUSTUS	exon	15247522	15248106	.	-	.	transcript_id "Ledus.S1G160800.t1"; gene_id "Ledus.S1G160800"
Ledus.S1	AUGUSTUS	start_codon	15248104	15248106	.	-	0	transcript_id "Ledus.S1G160800.t1"; gene_id "Ledus.S1G160800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8520.t1 is derived from g13192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12436993	12437343	.	+	.	Ledus.S5G129800
Ledus.S5	AUGUSTUS	transcript	12436993	12437343	.	+	.	transcript_id "Ledus.S5G129800.t1"; gene_id "Ledus.S5G129800"
Ledus.S5	AUGUSTUS	start_codon	12436993	12436995	.	+	0	transcript_id "Ledus.S5G129800.t1"; gene_id "Ledus.S5G129800"
Ledus.S5	AUGUSTUS	CDS	12436993	12437343	0.9	+	0	transcript_id "Ledus.S5G129800.t1"; gene_id "Ledus.S5G129800"
Ledus.S5	AUGUSTUS	exon	12436993	12437343	.	+	.	transcript_id "Ledus.S5G129800.t1"; gene_id "Ledus.S5G129800"
Ledus.S5	AUGUSTUS	stop_codon	12437344	12437346	.	+	0	transcript_id "Ledus.S5G129800.t1"; gene_id "Ledus.S5G129800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10706.t1 is derived from g11736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17295205	17295531	.	+	.	Ledus.S3G218300
Ledus.S3	AUGUSTUS	transcript	17295205	17295531	.	+	.	transcript_id "Ledus.S3G218300.t1"; gene_id "Ledus.S3G218300"
Ledus.S3	AUGUSTUS	start_codon	17295205	17295207	.	+	0	transcript_id "Ledus.S3G218300.t1"; gene_id "Ledus.S3G218300"
Ledus.S3	AUGUSTUS	CDS	17295205	17295531	0.8	+	0	transcript_id "Ledus.S3G218300.t1"; gene_id "Ledus.S3G218300"
Ledus.S3	AUGUSTUS	exon	17295205	17295531	.	+	.	transcript_id "Ledus.S3G218300.t1"; gene_id "Ledus.S3G218300"
Ledus.S3	AUGUSTUS	stop_codon	17295532	17295534	.	+	0	transcript_id "Ledus.S3G218300.t1"; gene_id "Ledus.S3G218300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3355.t1 is derived from g790.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7799112	7802292	.	-	.	Ledus.S1G077600
Ledus.S1	AUGUSTUS	transcript	7799112	7802292	.	-	.	transcript_id "Ledus.S1G077600.t1"; gene_id "Ledus.S1G077600"
Ledus.S1	AUGUSTUS	stop_codon	7799109	7799111	.	-	0	transcript_id "Ledus.S1G077600.t1"; gene_id "Ledus.S1G077600"
Ledus.S1	AUGUSTUS	CDS	7799112	7799527	0.58	-	2	transcript_id "Ledus.S1G077600.t1"; gene_id "Ledus.S1G077600"
Ledus.S1	AUGUSTUS	exon	7799112	7799527	.	-	.	transcript_id "Ledus.S1G077600.t1"; gene_id "Ledus.S1G077600"
Ledus.S1	AUGUSTUS	intron	7799528	7799627	.	-	.	transcript_id "Ledus.S1G077600.t1"; gene_id "Ledus.S1G077600"
Ledus.S1	AUGUSTUS	CDS	7799628	7802292	0.95	-	0	transcript_id "Ledus.S1G077600.t1"; gene_id "Ledus.S1G077600"
Ledus.S1	AUGUSTUS	exon	7799628	7802292	.	-	.	transcript_id "Ledus.S1G077600.t1"; gene_id "Ledus.S1G077600"
Ledus.S1	AUGUSTUS	start_codon	7802290	7802292	.	-	0	transcript_id "Ledus.S1G077600.t1"; gene_id "Ledus.S1G077600"
# This transcript jg948.t2 is derived from g7809.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg949.t1 is derived from g7810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6266554	6267215	.	-	.	Ledus.S2G083100
Ledus.S2	AUGUSTUS	transcript	6266554	6267215	.	-	.	transcript_id "Ledus.S2G083100.t1"; gene_id "Ledus.S2G083100"
Ledus.S2	AUGUSTUS	stop_codon	6266551	6266553	.	-	0	transcript_id "Ledus.S2G083100.t1"; gene_id "Ledus.S2G083100"
Ledus.S2	AUGUSTUS	CDS	6266554	6266668	0.92	-	1	transcript_id "Ledus.S2G083100.t1"; gene_id "Ledus.S2G083100"
Ledus.S2	AUGUSTUS	exon	6266554	6266668	.	-	.	transcript_id "Ledus.S2G083100.t1"; gene_id "Ledus.S2G083100"
Ledus.S2	AUGUSTUS	intron	6266669	6266952	.	-	.	transcript_id "Ledus.S2G083100.t1"; gene_id "Ledus.S2G083100"
Ledus.S2	AUGUSTUS	CDS	6266953	6267215	0.41	-	0	transcript_id "Ledus.S2G083100.t1"; gene_id "Ledus.S2G083100"
Ledus.S2	AUGUSTUS	exon	6266953	6267215	.	-	.	transcript_id "Ledus.S2G083100.t1"; gene_id "Ledus.S2G083100"
Ledus.S2	AUGUSTUS	start_codon	6267213	6267215	.	-	0	transcript_id "Ledus.S2G083100.t1"; gene_id "Ledus.S2G083100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7731.t1 is derived from g12402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5605803	5609171	.	-	.	Ledus.S5G050900
Ledus.S5	AUGUSTUS	transcript	5605803	5609171	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	stop_codon	5605800	5605802	.	-	0	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5605803	5605913	1	-	0	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5605803	5605913	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5605914	5606002	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5606003	5606089	1	-	0	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5606003	5606089	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5606090	5606235	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5606236	5606288	1	-	2	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5606236	5606288	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5606289	5606371	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5606372	5606513	1	-	0	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5606372	5606513	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5606514	5606592	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5606593	5606688	1	-	0	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5606593	5606688	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5606689	5606812	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5606813	5606849	1	-	1	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5606813	5606849	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5606850	5606964	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5606965	5607080	0.68	-	0	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5606965	5607080	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5607081	5607180	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5607181	5607254	1	-	2	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5607181	5607254	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5607255	5607405	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5607406	5607476	1	-	1	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5607406	5607476	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5607477	5607556	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5607557	5607637	1	-	1	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5607557	5607637	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5607638	5607747	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5607748	5607822	1	-	1	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5607748	5607822	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5607823	5608005	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5608006	5608058	1	-	0	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5608006	5608058	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5608059	5608177	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5608178	5608277	0.86	-	1	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5608178	5608277	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5608278	5608364	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5608365	5608510	1	-	0	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5608365	5608510	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	intron	5608511	5608598	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	CDS	5608599	5609171	0.57	-	0	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	exon	5608599	5609171	.	-	.	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
Ledus.S5	AUGUSTUS	start_codon	5609169	5609171	.	-	0	transcript_id "Ledus.S5G050900.t1"; gene_id "Ledus.S5G050900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2558.t1 is derived from g9421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18959462	18963528	.	+	.	Ledus.S2G244000
Ledus.S2	AUGUSTUS	transcript	18959462	18963528	.	+	.	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	start_codon	18959462	18959464	.	+	0	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	CDS	18959462	18959585	0.85	+	0	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	exon	18959462	18959585	.	+	.	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	intron	18959586	18959659	.	+	.	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	CDS	18959660	18959751	1	+	2	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	exon	18959660	18959751	.	+	.	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	intron	18959752	18959830	.	+	.	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	CDS	18959831	18959988	1	+	0	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	exon	18959831	18959988	.	+	.	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	intron	18959989	18960082	.	+	.	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	CDS	18960083	18963002	0.71	+	1	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	exon	18960083	18963002	.	+	.	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	intron	18963003	18963142	.	+	.	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	CDS	18963143	18963316	0.51	+	0	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	exon	18963143	18963316	.	+	.	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	intron	18963317	18963456	.	+	.	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	CDS	18963457	18963528	0.53	+	0	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	exon	18963457	18963528	.	+	.	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
Ledus.S2	AUGUSTUS	stop_codon	18963529	18963531	.	+	0	transcript_id "Ledus.S2G244000.t1"; gene_id "Ledus.S2G244000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9981.t1 is derived from g11011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11729181	11731832	.	+	.	Ledus.S3G145800
Ledus.S3	AUGUSTUS	transcript	11729181	11731832	.	+	.	transcript_id "Ledus.S3G145800.t1"; gene_id "Ledus.S3G145800"
Ledus.S3	AUGUSTUS	start_codon	11729181	11729183	.	+	0	transcript_id "Ledus.S3G145800.t1"; gene_id "Ledus.S3G145800"
Ledus.S3	AUGUSTUS	CDS	11729181	11730342	0.68	+	0	transcript_id "Ledus.S3G145800.t1"; gene_id "Ledus.S3G145800"
Ledus.S3	AUGUSTUS	exon	11729181	11730342	.	+	.	transcript_id "Ledus.S3G145800.t1"; gene_id "Ledus.S3G145800"
Ledus.S3	AUGUSTUS	intron	11730343	11730447	.	+	.	transcript_id "Ledus.S3G145800.t1"; gene_id "Ledus.S3G145800"
Ledus.S3	AUGUSTUS	CDS	11730448	11731832	0.32	+	2	transcript_id "Ledus.S3G145800.t1"; gene_id "Ledus.S3G145800"
Ledus.S3	AUGUSTUS	exon	11730448	11731832	.	+	.	transcript_id "Ledus.S3G145800.t1"; gene_id "Ledus.S3G145800"
Ledus.S3	AUGUSTUS	stop_codon	11731833	11731835	.	+	0	transcript_id "Ledus.S3G145800.t1"; gene_id "Ledus.S3G145800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12976.t1 is derived from g6786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1509835	1510795	.	-	.	Ledus.S6G003800
Ledus.S6	AUGUSTUS	transcript	1509835	1510795	.	-	.	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	stop_codon	1509832	1509834	.	-	0	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	CDS	1509835	1509850	0.41	-	1	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	exon	1509835	1509850	.	-	.	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	intron	1509851	1509927	.	-	.	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	CDS	1509928	1510163	0.31	-	0	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	exon	1509928	1510163	.	-	.	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	intron	1510164	1510272	.	-	.	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	CDS	1510273	1510411	0.73	-	1	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	exon	1510273	1510411	.	-	.	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	intron	1510412	1510529	.	-	.	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	CDS	1510530	1510795	0.41	-	0	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	exon	1510530	1510795	.	-	.	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
Ledus.S6	AUGUSTUS	start_codon	1510793	1510795	.	-	0	transcript_id "Ledus.S6G003800.t1"; gene_id "Ledus.S6G003800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13071.t1 is derived from g6881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4954040	4954720	.	-	.	Ledus.S6G013300
Ledus.S6	AUGUSTUS	transcript	4954040	4954720	.	-	.	transcript_id "Ledus.S6G013300.t1"; gene_id "Ledus.S6G013300"
Ledus.S6	AUGUSTUS	stop_codon	4954037	4954039	.	-	0	transcript_id "Ledus.S6G013300.t1"; gene_id "Ledus.S6G013300"
Ledus.S6	AUGUSTUS	CDS	4954040	4954720	0.96	-	0	transcript_id "Ledus.S6G013300.t1"; gene_id "Ledus.S6G013300"
Ledus.S6	AUGUSTUS	exon	4954040	4954720	.	-	.	transcript_id "Ledus.S6G013300.t1"; gene_id "Ledus.S6G013300"
Ledus.S6	AUGUSTUS	start_codon	4954718	4954720	.	-	0	transcript_id "Ledus.S6G013300.t1"; gene_id "Ledus.S6G013300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8463.t1 is derived from g13135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11818040	11822403	.	+	.	Ledus.S5G124100
Ledus.S5	AUGUSTUS	transcript	11818040	11822403	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	start_codon	11818040	11818042	.	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11818040	11818197	0.78	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11818040	11818197	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11818198	11818357	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11818358	11818520	0.55	+	1	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11818358	11818520	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11818521	11818653	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11818654	11818702	1	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11818654	11818702	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11818703	11818799	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11818800	11819022	1	+	2	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11818800	11819022	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11819023	11819113	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11819114	11819282	1	+	1	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11819114	11819282	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11819283	11819429	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11819430	11819495	1	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11819430	11819495	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11819496	11819639	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11819640	11819747	1	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11819640	11819747	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11819748	11819855	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11819856	11819963	1	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11819856	11819963	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11819964	11820068	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11820069	11820134	1	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11820069	11820134	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11820135	11820224	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11820225	11820285	1	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11820225	11820285	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11820286	11820555	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11820556	11820683	1	+	2	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11820556	11820683	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11820684	11820794	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11820795	11820836	0.99	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11820795	11820836	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11820837	11820946	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11820947	11821063	0.99	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11820947	11821063	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11821064	11821282	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11821283	11821334	1	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11821283	11821334	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11821335	11821462	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11821463	11821601	1	+	2	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11821463	11821601	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11821602	11821729	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11821730	11821818	1	+	1	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11821730	11821818	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11821819	11821914	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11821915	11821991	1	+	2	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11821915	11821991	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	intron	11821992	11822112	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	CDS	11822113	11822403	1	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	exon	11822113	11822403	.	+	.	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
Ledus.S5	AUGUSTUS	stop_codon	11822404	11822406	.	+	0	transcript_id "Ledus.S5G124100.t1"; gene_id "Ledus.S5G124100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11805.t1 is derived from g5424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6869676	6870146	.	+	.	Ledus.S4G096100
Ledus.S4	AUGUSTUS	transcript	6869676	6870146	.	+	.	transcript_id "Ledus.S4G096100.t1"; gene_id "Ledus.S4G096100"
Ledus.S4	AUGUSTUS	start_codon	6869676	6869678	.	+	0	transcript_id "Ledus.S4G096100.t1"; gene_id "Ledus.S4G096100"
Ledus.S4	AUGUSTUS	CDS	6869676	6869820	0.61	+	0	transcript_id "Ledus.S4G096100.t1"; gene_id "Ledus.S4G096100"
Ledus.S4	AUGUSTUS	exon	6869676	6869820	.	+	.	transcript_id "Ledus.S4G096100.t1"; gene_id "Ledus.S4G096100"
Ledus.S4	AUGUSTUS	intron	6869821	6869901	.	+	.	transcript_id "Ledus.S4G096100.t1"; gene_id "Ledus.S4G096100"
Ledus.S4	AUGUSTUS	CDS	6869902	6870146	0.65	+	2	transcript_id "Ledus.S4G096100.t1"; gene_id "Ledus.S4G096100"
Ledus.S4	AUGUSTUS	exon	6869902	6870146	.	+	.	transcript_id "Ledus.S4G096100.t1"; gene_id "Ledus.S4G096100"
Ledus.S4	AUGUSTUS	stop_codon	6870147	6870149	.	+	0	transcript_id "Ledus.S4G096100.t1"; gene_id "Ledus.S4G096100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10897.t1 is derived from g4515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	372712	372933	.	-	.	Ledus.S4G005300
Ledus.S4	AUGUSTUS	transcript	372712	372933	.	-	.	transcript_id "Ledus.S4G005300.t1"; gene_id "Ledus.S4G005300"
Ledus.S4	AUGUSTUS	stop_codon	372709	372711	.	-	0	transcript_id "Ledus.S4G005300.t1"; gene_id "Ledus.S4G005300"
Ledus.S4	AUGUSTUS	CDS	372712	372933	0.93	-	0	transcript_id "Ledus.S4G005300.t1"; gene_id "Ledus.S4G005300"
Ledus.S4	AUGUSTUS	exon	372712	372933	.	-	.	transcript_id "Ledus.S4G005300.t1"; gene_id "Ledus.S4G005300"
Ledus.S4	AUGUSTUS	start_codon	372931	372933	.	-	0	transcript_id "Ledus.S4G005300.t1"; gene_id "Ledus.S4G005300"
# This transcript jg2463.t2 is derived from g9326.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2464.t1 is derived from g9327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18276574	18279148	.	-	.	Ledus.S2G234600
Ledus.S2	AUGUSTUS	transcript	18276574	18279148	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	stop_codon	18276571	18276573	.	-	0	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18276574	18276723	0.93	-	0	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18276574	18276723	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18276724	18276807	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18276808	18276898	1	-	1	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18276808	18276898	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18276899	18277066	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18277067	18277210	1	-	1	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18277067	18277210	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18277211	18277301	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18277302	18277367	1	-	1	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18277302	18277367	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18277368	18277501	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18277502	18277663	0.83	-	1	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18277502	18277663	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18277664	18277748	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18277749	18277850	0.99	-	1	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18277749	18277850	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18277851	18277942	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18277943	18278017	1	-	1	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18277943	18278017	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18278018	18278175	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18278176	18278256	1	-	1	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18278176	18278256	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18278257	18278354	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18278355	18278424	1	-	2	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18278355	18278424	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18278425	18278499	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18278500	18278576	1	-	1	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18278500	18278576	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18278577	18278698	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18278699	18279008	0.99	-	2	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18278699	18279008	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18279009	18279096	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18279097	18279148	1	-	0	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18279097	18279148	.	-	.	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	start_codon	18279146	18279148	.	-	0	transcript_id "Ledus.S2G234600.t1"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	transcript	18276574	18278110	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	stop_codon	18276571	18276573	.	-	0	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18276574	18276723	0.91	-	0	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18276574	18276723	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18276724	18276807	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18276808	18276898	1	-	1	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18276808	18276898	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18276899	18277066	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18277067	18277210	1	-	1	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18277067	18277210	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18277211	18277301	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18277302	18277367	1	-	1	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18277302	18277367	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18277368	18277501	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18277502	18277663	0.91	-	1	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18277502	18277663	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18277664	18277748	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18277749	18277850	1	-	1	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18277749	18277850	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18277851	18277942	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18277943	18278017	1	-	1	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18277943	18278017	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	intron	18278018	18278102	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	CDS	18278103	18278110	0.91	-	0	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	exon	18278103	18278110	.	-	.	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
Ledus.S2	AUGUSTUS	start_codon	18278108	18278110	.	-	0	transcript_id "Ledus.S2G234600.t2"; gene_id "Ledus.S2G234600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12961.t1 is derived from g6771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1100889	1101095	.	-	.	Ledus.S6G002300
Ledus.S6	AUGUSTUS	transcript	1100889	1101095	.	-	.	transcript_id "Ledus.S6G002300.t1"; gene_id "Ledus.S6G002300"
Ledus.S6	AUGUSTUS	stop_codon	1100886	1100888	.	-	0	transcript_id "Ledus.S6G002300.t1"; gene_id "Ledus.S6G002300"
Ledus.S6	AUGUSTUS	CDS	1100889	1101095	0.7	-	0	transcript_id "Ledus.S6G002300.t1"; gene_id "Ledus.S6G002300"
Ledus.S6	AUGUSTUS	exon	1100889	1101095	.	-	.	transcript_id "Ledus.S6G002300.t1"; gene_id "Ledus.S6G002300"
Ledus.S6	AUGUSTUS	start_codon	1101093	1101095	.	-	0	transcript_id "Ledus.S6G002300.t1"; gene_id "Ledus.S6G002300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6104.t1 is derived from g3547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28920758	28921982	.	-	.	Ledus.S1G352500
Ledus.S1	AUGUSTUS	transcript	28920758	28921982	.	-	.	transcript_id "Ledus.S1G352500.t1"; gene_id "Ledus.S1G352500"
Ledus.S1	AUGUSTUS	stop_codon	28920755	28920757	.	-	0	transcript_id "Ledus.S1G352500.t1"; gene_id "Ledus.S1G352500"
Ledus.S1	AUGUSTUS	CDS	28920758	28921285	1	-	0	transcript_id "Ledus.S1G352500.t1"; gene_id "Ledus.S1G352500"
Ledus.S1	AUGUSTUS	exon	28920758	28921285	.	-	.	transcript_id "Ledus.S1G352500.t1"; gene_id "Ledus.S1G352500"
Ledus.S1	AUGUSTUS	intron	28921286	28921374	.	-	.	transcript_id "Ledus.S1G352500.t1"; gene_id "Ledus.S1G352500"
Ledus.S1	AUGUSTUS	CDS	28921375	28921610	1	-	2	transcript_id "Ledus.S1G352500.t1"; gene_id "Ledus.S1G352500"
Ledus.S1	AUGUSTUS	exon	28921375	28921610	.	-	.	transcript_id "Ledus.S1G352500.t1"; gene_id "Ledus.S1G352500"
Ledus.S1	AUGUSTUS	intron	28921611	28921690	.	-	.	transcript_id "Ledus.S1G352500.t1"; gene_id "Ledus.S1G352500"
Ledus.S1	AUGUSTUS	CDS	28921691	28921982	0.86	-	0	transcript_id "Ledus.S1G352500.t1"; gene_id "Ledus.S1G352500"
Ledus.S1	AUGUSTUS	exon	28921691	28921982	.	-	.	transcript_id "Ledus.S1G352500.t1"; gene_id "Ledus.S1G352500"
Ledus.S1	AUGUSTUS	start_codon	28921980	28921982	.	-	0	transcript_id "Ledus.S1G352500.t1"; gene_id "Ledus.S1G352500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12833.t1 is derived from g9535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C16	AUGUSTUS	gene	51886	52911	.	+	.	Ledus.C16G000500
Ledus.C16	AUGUSTUS	transcript	51886	52911	.	+	.	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	start_codon	51886	51888	.	+	0	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	CDS	51886	51950	0.95	+	0	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	exon	51886	51950	.	+	.	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	intron	51951	52238	.	+	.	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	CDS	52239	52275	1	+	1	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	exon	52239	52275	.	+	.	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	intron	52276	52474	.	+	.	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	CDS	52475	52549	0.91	+	0	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	exon	52475	52549	.	+	.	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	intron	52550	52842	.	+	.	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	CDS	52843	52911	0.88	+	0	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	exon	52843	52911	.	+	.	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
Ledus.C16	AUGUSTUS	stop_codon	52912	52914	.	+	0	transcript_id "Ledus.C16G000500.t1"; gene_id "Ledus.C16G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10599.t1 is derived from g11629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16293744	16296431	.	+	.	Ledus.S3G207600
Ledus.S3	AUGUSTUS	transcript	16293744	16296431	.	+	.	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	start_codon	16293744	16293746	.	+	0	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	CDS	16293744	16293860	0.54	+	0	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	exon	16293744	16293860	.	+	.	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	intron	16293861	16294021	.	+	.	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	CDS	16294022	16294117	1	+	0	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	exon	16294022	16294117	.	+	.	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	intron	16294118	16294194	.	+	.	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	CDS	16294195	16294242	0.66	+	0	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	exon	16294195	16294242	.	+	.	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	intron	16294243	16294334	.	+	.	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	CDS	16294335	16294399	0.35	+	0	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	exon	16294335	16294399	.	+	.	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	intron	16294400	16294528	.	+	.	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	CDS	16294529	16296431	0.58	+	1	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	exon	16294529	16296431	.	+	.	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
Ledus.S3	AUGUSTUS	stop_codon	16296432	16296434	.	+	0	transcript_id "Ledus.S3G207600.t1"; gene_id "Ledus.S3G207600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12421.t1 is derived from g6042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11954005	11956889	.	-	.	Ledus.S4G157700
Ledus.S4	AUGUSTUS	transcript	11954005	11956889	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	stop_codon	11954002	11954004	.	-	0	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	CDS	11954005	11954118	0.49	-	0	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	exon	11954005	11954118	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	intron	11954119	11954233	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	CDS	11954234	11954320	0.65	-	0	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	exon	11954234	11954320	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	intron	11954321	11954567	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	CDS	11954568	11954828	1	-	0	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	exon	11954568	11954828	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	intron	11954829	11955031	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	CDS	11955032	11955241	1	-	0	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	exon	11955032	11955241	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	intron	11955242	11955376	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	CDS	11955377	11956508	0.68	-	1	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	exon	11955377	11956508	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	intron	11956509	11956623	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	CDS	11956624	11956767	0.57	-	1	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	exon	11956624	11956767	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	intron	11956768	11956872	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	CDS	11956873	11956889	0.7	-	0	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	exon	11956873	11956889	.	-	.	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
Ledus.S4	AUGUSTUS	start_codon	11956887	11956889	.	-	0	transcript_id "Ledus.S4G157700.t1"; gene_id "Ledus.S4G157700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12176.t1 is derived from g5795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10153813	10155189	.	+	.	Ledus.S4G133200
Ledus.S4	AUGUSTUS	transcript	10153813	10155189	.	+	.	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	start_codon	10153813	10153815	.	+	0	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	CDS	10153813	10153855	0.54	+	0	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	exon	10153813	10153855	.	+	.	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	intron	10153856	10153947	.	+	.	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	CDS	10153948	10153984	1	+	2	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	exon	10153948	10153984	.	+	.	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	intron	10153985	10154115	.	+	.	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	CDS	10154116	10154332	0.92	+	1	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	exon	10154116	10154332	.	+	.	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	intron	10154333	10154485	.	+	.	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	CDS	10154486	10154647	0.98	+	0	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	exon	10154486	10154647	.	+	.	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	intron	10154648	10154745	.	+	.	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	CDS	10154746	10154871	0.99	+	0	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	exon	10154746	10154871	.	+	.	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	intron	10154872	10154970	.	+	.	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	CDS	10154971	10155189	0.9	+	0	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	exon	10154971	10155189	.	+	.	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
Ledus.S4	AUGUSTUS	stop_codon	10155190	10155192	.	+	0	transcript_id "Ledus.S4G133200.t1"; gene_id "Ledus.S4G133200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1888.t1 is derived from g8751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13191622	13195257	.	+	.	Ledus.S2G177000
Ledus.S2	AUGUSTUS	transcript	13191622	13195257	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	start_codon	13191622	13191624	.	+	0	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13191622	13191737	0.99	+	0	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13191622	13191737	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13191738	13191819	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13191820	13192022	1	+	1	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13191820	13192022	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13192023	13192118	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13192119	13192204	1	+	2	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13192119	13192204	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13192205	13192313	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13192314	13192409	1	+	0	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13192314	13192409	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13192410	13192495	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13192496	13192625	1	+	0	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13192496	13192625	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13192626	13192751	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13192752	13192810	1	+	2	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13192752	13192810	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13192811	13192986	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13192987	13193085	1	+	0	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13192987	13193085	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13193086	13193172	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13193173	13193243	1	+	0	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13193173	13193243	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13193244	13193466	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13193467	13193563	1	+	1	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13193467	13193563	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13193564	13193655	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13193656	13193730	1	+	0	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13193656	13193730	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13193731	13193874	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13193875	13193973	1	+	0	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13193875	13193973	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13193974	13194149	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13194150	13194305	0.75	+	0	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13194150	13194305	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13194306	13194411	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13194412	13194441	0.81	+	0	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13194412	13194441	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13194442	13194577	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13194578	13194618	0.84	+	0	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13194578	13194618	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13194619	13194706	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13194707	13194784	0.99	+	1	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13194707	13194784	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13194785	13194871	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13194872	13194964	0.99	+	1	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13194872	13194964	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	intron	13194965	13195214	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	CDS	13195215	13195257	0.99	+	1	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	exon	13195215	13195257	.	+	.	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
Ledus.S2	AUGUSTUS	stop_codon	13195258	13195260	.	+	0	transcript_id "Ledus.S2G177000.t1"; gene_id "Ledus.S2G177000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9946.t1 is derived from g10976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11426351	11430718	.	+	.	Ledus.S3G142300
Ledus.S3	AUGUSTUS	transcript	11426351	11430718	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	start_codon	11426351	11426353	.	+	0	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	CDS	11426351	11427030	0.94	+	0	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	exon	11426351	11427030	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	intron	11427031	11427131	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	CDS	11427132	11427582	1	+	1	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	exon	11427132	11427582	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	intron	11427583	11427762	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	CDS	11427763	11428359	0.99	+	0	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	exon	11427763	11428359	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	intron	11428360	11428467	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	CDS	11428468	11428832	0.98	+	0	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	exon	11428468	11428832	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	intron	11428833	11428992	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	CDS	11428993	11429296	0.95	+	1	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	exon	11428993	11429296	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	intron	11429297	11429413	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	CDS	11429414	11429536	1	+	0	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	exon	11429414	11429536	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	intron	11429537	11429696	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	CDS	11429697	11429820	0.78	+	0	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	exon	11429697	11429820	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	intron	11429821	11429914	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	CDS	11429915	11429991	0.68	+	2	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	exon	11429915	11429991	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	intron	11429992	11430089	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	CDS	11430090	11430155	0.97	+	0	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	exon	11430090	11430155	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	intron	11430156	11430250	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	CDS	11430251	11430718	0.97	+	0	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	exon	11430251	11430718	.	+	.	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
Ledus.S3	AUGUSTUS	stop_codon	11430719	11430721	.	+	0	transcript_id "Ledus.S3G142300.t1"; gene_id "Ledus.S3G142300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2122.t1 is derived from g8985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14815676	14822571	.	-	.	Ledus.S2G200400
Ledus.S2	AUGUSTUS	transcript	14815676	14822571	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	stop_codon	14815673	14815675	.	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14815676	14815747	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14815676	14815747	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14815748	14815831	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14815832	14815891	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14815832	14815891	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14815892	14815987	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14815988	14816185	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14815988	14816185	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14816186	14816314	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14816315	14816395	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14816315	14816395	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14816396	14816484	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14816485	14816610	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14816485	14816610	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14816611	14816702	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14816703	14816831	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14816703	14816831	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14816832	14817044	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14817045	14817270	0.98	-	1	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14817045	14817270	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14817271	14817372	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14817373	14817519	0.83	-	1	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14817373	14817519	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14817520	14817599	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14817600	14817841	0.76	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14817600	14817841	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14817842	14817946	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14817947	14818135	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14817947	14818135	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14818136	14818227	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14818228	14818389	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14818228	14818389	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14818390	14818494	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14818495	14818596	0.98	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14818495	14818596	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14818597	14818785	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14818786	14819042	0.98	-	2	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14818786	14819042	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14819043	14819273	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14819274	14819452	1	-	1	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14819274	14819452	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14819453	14819600	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14819601	14819801	1	-	1	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14819601	14819801	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14819802	14819961	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14819962	14820082	1	-	2	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14819962	14820082	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14820083	14820219	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14820220	14820315	1	-	2	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14820220	14820315	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14820316	14820477	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14820478	14820498	1	-	2	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14820478	14820498	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14820499	14820621	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14820622	14820716	1	-	1	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14820622	14820716	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14820717	14820820	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14820821	14820921	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14820821	14820921	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14820922	14821093	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14821094	14821159	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14821094	14821159	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14821160	14821269	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14821270	14821376	1	-	2	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14821270	14821376	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14821377	14821533	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14821534	14821762	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14821534	14821762	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14821763	14821957	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14821958	14822050	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14821958	14822050	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14822051	14822136	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14822137	14822196	1	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14822137	14822196	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	intron	14822197	14822343	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	CDS	14822344	14822571	0.99	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	exon	14822344	14822571	.	-	.	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
Ledus.S2	AUGUSTUS	start_codon	14822569	14822571	.	-	0	transcript_id "Ledus.S2G200400.t1"; gene_id "Ledus.S2G200400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10532.t1 is derived from g11562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15958599	15959720	.	-	.	Ledus.S3G200900
Ledus.S3	AUGUSTUS	transcript	15958599	15959720	.	-	.	transcript_id "Ledus.S3G200900.t1"; gene_id "Ledus.S3G200900"
Ledus.S3	AUGUSTUS	stop_codon	15958596	15958598	.	-	0	transcript_id "Ledus.S3G200900.t1"; gene_id "Ledus.S3G200900"
Ledus.S3	AUGUSTUS	CDS	15958599	15959720	0.68	-	0	transcript_id "Ledus.S3G200900.t1"; gene_id "Ledus.S3G200900"
Ledus.S3	AUGUSTUS	exon	15958599	15959720	.	-	.	transcript_id "Ledus.S3G200900.t1"; gene_id "Ledus.S3G200900"
Ledus.S3	AUGUSTUS	start_codon	15959718	15959720	.	-	0	transcript_id "Ledus.S3G200900.t1"; gene_id "Ledus.S3G200900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg835.t1 is derived from g7696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5526166	5527531	.	+	.	Ledus.S2G071700
Ledus.S2	AUGUSTUS	transcript	5526166	5527531	.	+	.	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	start_codon	5526166	5526168	.	+	0	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	CDS	5526166	5526530	0.92	+	0	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	exon	5526166	5526530	.	+	.	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	intron	5526531	5526606	.	+	.	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	CDS	5526607	5526793	1	+	1	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	exon	5526607	5526793	.	+	.	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	intron	5526794	5526856	.	+	.	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	CDS	5526857	5527299	1	+	0	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	exon	5526857	5527299	.	+	.	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	intron	5527300	5527380	.	+	.	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	CDS	5527381	5527531	0.99	+	1	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	exon	5527381	5527531	.	+	.	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
Ledus.S2	AUGUSTUS	stop_codon	5527532	5527534	.	+	0	transcript_id "Ledus.S2G071700.t1"; gene_id "Ledus.S2G071700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2461.t1 is derived from g9324.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18268743	18269364	.	-	.	Ledus.S2G234300
Ledus.S2	AUGUSTUS	transcript	18268743	18269364	.	-	.	transcript_id "Ledus.S2G234300.t1"; gene_id "Ledus.S2G234300"
Ledus.S2	AUGUSTUS	stop_codon	18268740	18268742	.	-	0	transcript_id "Ledus.S2G234300.t1"; gene_id "Ledus.S2G234300"
Ledus.S2	AUGUSTUS	CDS	18268743	18268744	0.97	-	2	transcript_id "Ledus.S2G234300.t1"; gene_id "Ledus.S2G234300"
Ledus.S2	AUGUSTUS	exon	18268743	18268744	.	-	.	transcript_id "Ledus.S2G234300.t1"; gene_id "Ledus.S2G234300"
Ledus.S2	AUGUSTUS	intron	18268745	18268957	.	-	.	transcript_id "Ledus.S2G234300.t1"; gene_id "Ledus.S2G234300"
Ledus.S2	AUGUSTUS	CDS	18268958	18269006	0.96	-	0	transcript_id "Ledus.S2G234300.t1"; gene_id "Ledus.S2G234300"
Ledus.S2	AUGUSTUS	exon	18268958	18269006	.	-	.	transcript_id "Ledus.S2G234300.t1"; gene_id "Ledus.S2G234300"
Ledus.S2	AUGUSTUS	intron	18269007	18269097	.	-	.	transcript_id "Ledus.S2G234300.t1"; gene_id "Ledus.S2G234300"
Ledus.S2	AUGUSTUS	CDS	18269098	18269364	0.61	-	0	transcript_id "Ledus.S2G234300.t1"; gene_id "Ledus.S2G234300"
Ledus.S2	AUGUSTUS	exon	18269098	18269364	.	-	.	transcript_id "Ledus.S2G234300.t1"; gene_id "Ledus.S2G234300"
Ledus.S2	AUGUSTUS	start_codon	18269362	18269364	.	-	0	transcript_id "Ledus.S2G234300.t1"; gene_id "Ledus.S2G234300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg379.t1 is derived from g7240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2034290	2036090	.	+	.	Ledus.S2G026100
Ledus.S2	AUGUSTUS	transcript	2034290	2036090	.	+	.	transcript_id "Ledus.S2G026100.t1"; gene_id "Ledus.S2G026100"
Ledus.S2	AUGUSTUS	start_codon	2034290	2034292	.	+	0	transcript_id "Ledus.S2G026100.t1"; gene_id "Ledus.S2G026100"
Ledus.S2	AUGUSTUS	CDS	2034290	2034823	0.96	+	0	transcript_id "Ledus.S2G026100.t1"; gene_id "Ledus.S2G026100"
Ledus.S2	AUGUSTUS	exon	2034290	2034823	.	+	.	transcript_id "Ledus.S2G026100.t1"; gene_id "Ledus.S2G026100"
Ledus.S2	AUGUSTUS	intron	2034824	2034899	.	+	.	transcript_id "Ledus.S2G026100.t1"; gene_id "Ledus.S2G026100"
Ledus.S2	AUGUSTUS	CDS	2034900	2036090	0.86	+	0	transcript_id "Ledus.S2G026100.t1"; gene_id "Ledus.S2G026100"
Ledus.S2	AUGUSTUS	exon	2034900	2036090	.	+	.	transcript_id "Ledus.S2G026100.t1"; gene_id "Ledus.S2G026100"
Ledus.S2	AUGUSTUS	stop_codon	2036091	2036093	.	+	0	transcript_id "Ledus.S2G026100.t1"; gene_id "Ledus.S2G026100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11264.t1 is derived from g4882.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3072708	3074171	.	+	.	Ledus.S4G042000
Ledus.S4	AUGUSTUS	transcript	3072708	3073300	.	+	.	transcript_id "Ledus.S4G042000.t1"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	start_codon	3072708	3072710	.	+	0	transcript_id "Ledus.S4G042000.t1"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	CDS	3072708	3072934	0.91	+	0	transcript_id "Ledus.S4G042000.t1"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	exon	3072708	3072934	.	+	.	transcript_id "Ledus.S4G042000.t1"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	intron	3072935	3073023	.	+	.	transcript_id "Ledus.S4G042000.t1"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	CDS	3073024	3073170	1	+	1	transcript_id "Ledus.S4G042000.t1"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	exon	3073024	3073170	.	+	.	transcript_id "Ledus.S4G042000.t1"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	intron	3073171	3073254	.	+	.	transcript_id "Ledus.S4G042000.t1"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	CDS	3073255	3073300	0.95	+	1	transcript_id "Ledus.S4G042000.t1"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	exon	3073255	3073300	.	+	.	transcript_id "Ledus.S4G042000.t1"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	stop_codon	3073301	3073303	.	+	0	transcript_id "Ledus.S4G042000.t1"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	transcript	3072708	3074171	.	+	.	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	start_codon	3072708	3072710	.	+	0	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	CDS	3072708	3072934	0.89	+	0	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	exon	3072708	3072934	.	+	.	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	intron	3072935	3073023	.	+	.	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	CDS	3073024	3073170	1	+	1	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	exon	3073024	3073170	.	+	.	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	intron	3073171	3073483	.	+	.	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	CDS	3073484	3073619	1	+	1	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	exon	3073484	3073619	.	+	.	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	intron	3073620	3073716	.	+	.	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	CDS	3073717	3073815	1	+	0	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	exon	3073717	3073815	.	+	.	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	intron	3073816	3073910	.	+	.	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	CDS	3073911	3074171	0.75	+	0	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	exon	3073911	3074171	.	+	.	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
Ledus.S4	AUGUSTUS	stop_codon	3074172	3074174	.	+	0	transcript_id "Ledus.S4G042000.t2"; gene_id "Ledus.S4G042000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10237.t1 is derived from g11267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13724997	13725314	.	+	.	Ledus.S3G171400
Ledus.S3	AUGUSTUS	transcript	13724997	13725314	.	+	.	transcript_id "Ledus.S3G171400.t1"; gene_id "Ledus.S3G171400"
Ledus.S3	AUGUSTUS	start_codon	13724997	13724999	.	+	0	transcript_id "Ledus.S3G171400.t1"; gene_id "Ledus.S3G171400"
Ledus.S3	AUGUSTUS	CDS	13724997	13725314	0.46	+	0	transcript_id "Ledus.S3G171400.t1"; gene_id "Ledus.S3G171400"
Ledus.S3	AUGUSTUS	exon	13724997	13725314	.	+	.	transcript_id "Ledus.S3G171400.t1"; gene_id "Ledus.S3G171400"
Ledus.S3	AUGUSTUS	stop_codon	13725315	13725317	.	+	0	transcript_id "Ledus.S3G171400.t1"; gene_id "Ledus.S3G171400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5514.t1 is derived from g2953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24727145	24729610	.	+	.	Ledus.S1G293500
Ledus.S1	AUGUSTUS	transcript	24727145	24729610	.	+	.	transcript_id "Ledus.S1G293500.t1"; gene_id "Ledus.S1G293500"
Ledus.S1	AUGUSTUS	start_codon	24727145	24727147	.	+	0	transcript_id "Ledus.S1G293500.t1"; gene_id "Ledus.S1G293500"
Ledus.S1	AUGUSTUS	CDS	24727145	24727327	0.95	+	0	transcript_id "Ledus.S1G293500.t1"; gene_id "Ledus.S1G293500"
Ledus.S1	AUGUSTUS	exon	24727145	24727327	.	+	.	transcript_id "Ledus.S1G293500.t1"; gene_id "Ledus.S1G293500"
Ledus.S1	AUGUSTUS	intron	24727328	24727487	.	+	.	transcript_id "Ledus.S1G293500.t1"; gene_id "Ledus.S1G293500"
Ledus.S1	AUGUSTUS	CDS	24727488	24728837	0.97	+	0	transcript_id "Ledus.S1G293500.t1"; gene_id "Ledus.S1G293500"
Ledus.S1	AUGUSTUS	exon	24727488	24728837	.	+	.	transcript_id "Ledus.S1G293500.t1"; gene_id "Ledus.S1G293500"
Ledus.S1	AUGUSTUS	intron	24728838	24728995	.	+	.	transcript_id "Ledus.S1G293500.t1"; gene_id "Ledus.S1G293500"
Ledus.S1	AUGUSTUS	CDS	24728996	24729610	1	+	0	transcript_id "Ledus.S1G293500.t1"; gene_id "Ledus.S1G293500"
Ledus.S1	AUGUSTUS	exon	24728996	24729610	.	+	.	transcript_id "Ledus.S1G293500.t1"; gene_id "Ledus.S1G293500"
Ledus.S1	AUGUSTUS	stop_codon	24729611	24729613	.	+	0	transcript_id "Ledus.S1G293500.t1"; gene_id "Ledus.S1G293500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1034.t1 is derived from g7895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6886630	6888569	.	-	.	Ledus.S2G091600
Ledus.S2	AUGUSTUS	transcript	6886630	6888569	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	stop_codon	6886627	6886629	.	-	0	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	CDS	6886630	6886770	0.9	-	0	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	exon	6886630	6886770	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	intron	6886771	6886846	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	CDS	6886847	6886953	0.98	-	2	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	exon	6886847	6886953	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	intron	6886954	6887039	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	CDS	6887040	6887118	1	-	0	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	exon	6887040	6887118	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	intron	6887119	6887190	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	CDS	6887191	6887280	1	-	0	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	exon	6887191	6887280	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	intron	6887281	6887365	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	CDS	6887366	6887617	1	-	0	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	exon	6887366	6887617	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	intron	6887618	6887712	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	CDS	6887713	6887865	1	-	0	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	exon	6887713	6887865	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	intron	6887866	6887954	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	CDS	6887955	6888273	0.85	-	1	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	exon	6887955	6888273	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	intron	6888274	6888360	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	CDS	6888361	6888569	0.66	-	0	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	exon	6888361	6888569	.	-	.	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
Ledus.S2	AUGUSTUS	start_codon	6888567	6888569	.	-	0	transcript_id "Ledus.S2G091600.t1"; gene_id "Ledus.S2G091600"
# This transcript jg4409.t2 is derived from g1845.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4410.t1 is derived from g1846.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16941481	16943347	.	-	.	Ledus.S1G183100
Ledus.S1	AUGUSTUS	transcript	16941481	16943347	.	-	.	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	stop_codon	16941478	16941480	.	-	0	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	CDS	16941481	16941900	0.99	-	0	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	exon	16941481	16941900	.	-	.	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	intron	16941901	16941983	.	-	.	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	CDS	16941984	16942362	0.99	-	1	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	exon	16941984	16942362	.	-	.	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	intron	16942363	16942422	.	-	.	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	CDS	16942423	16942694	1	-	0	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	exon	16942423	16942694	.	-	.	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	intron	16942695	16942781	.	-	.	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	CDS	16942782	16943008	1	-	2	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	exon	16942782	16943008	.	-	.	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	intron	16943009	16943088	.	-	.	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	CDS	16943089	16943347	0.56	-	0	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	exon	16943089	16943347	.	-	.	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
Ledus.S1	AUGUSTUS	start_codon	16943345	16943347	.	-	0	transcript_id "Ledus.S1G183100.t1"; gene_id "Ledus.S1G183100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9906.t1 is derived from g10936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11088205	11089848	.	+	.	Ledus.S3G138300
Ledus.S3	AUGUSTUS	transcript	11088205	11089848	.	+	.	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	start_codon	11088205	11088207	.	+	0	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	CDS	11088205	11088699	1	+	0	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	exon	11088205	11088699	.	+	.	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	intron	11088700	11088789	.	+	.	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	CDS	11088790	11088886	1	+	0	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	exon	11088790	11088886	.	+	.	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	intron	11088887	11088961	.	+	.	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	CDS	11088962	11089253	0.94	+	2	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	exon	11088962	11089253	.	+	.	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	intron	11089254	11089363	.	+	.	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	CDS	11089364	11089466	0.94	+	1	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	exon	11089364	11089466	.	+	.	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	intron	11089467	11089599	.	+	.	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	CDS	11089600	11089848	1	+	0	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	exon	11089600	11089848	.	+	.	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
Ledus.S3	AUGUSTUS	stop_codon	11089849	11089851	.	+	0	transcript_id "Ledus.S3G138300.t1"; gene_id "Ledus.S3G138300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1338.t1 is derived from g8199.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9323413	9324969	.	-	.	Ledus.S2G122000
Ledus.S2	AUGUSTUS	transcript	9323413	9324969	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	stop_codon	9323410	9323412	.	-	0	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	CDS	9323413	9323472	0.68	-	0	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	exon	9323413	9323472	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	intron	9323473	9323581	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	CDS	9323582	9323650	0.79	-	0	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	exon	9323582	9323650	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	intron	9323651	9323769	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	CDS	9323770	9323832	1	-	0	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	exon	9323770	9323832	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	intron	9323833	9323918	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	CDS	9323919	9324112	1	-	2	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	exon	9323919	9324112	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	intron	9324113	9324267	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	CDS	9324268	9324291	0.79	-	2	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	exon	9324268	9324291	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	intron	9324292	9324405	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	CDS	9324406	9324523	1	-	0	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	exon	9324406	9324523	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	intron	9324524	9324777	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	CDS	9324778	9324969	0.82	-	0	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	exon	9324778	9324969	.	-	.	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
Ledus.S2	AUGUSTUS	start_codon	9324967	9324969	.	-	0	transcript_id "Ledus.S2G122000.t1"; gene_id "Ledus.S2G122000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12882.t1 is derived from g4455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	331489	333136	.	+	.	Ledus.C10G002500
Ledus.C10	AUGUSTUS	transcript	331489	333136	.	+	.	transcript_id "Ledus.C10G002500.t1"; gene_id "Ledus.C10G002500"
Ledus.C10	AUGUSTUS	start_codon	331489	331491	.	+	0	transcript_id "Ledus.C10G002500.t1"; gene_id "Ledus.C10G002500"
Ledus.C10	AUGUSTUS	CDS	331489	331588	0.93	+	0	transcript_id "Ledus.C10G002500.t1"; gene_id "Ledus.C10G002500"
Ledus.C10	AUGUSTUS	exon	331489	331588	.	+	.	transcript_id "Ledus.C10G002500.t1"; gene_id "Ledus.C10G002500"
Ledus.C10	AUGUSTUS	intron	331589	331721	.	+	.	transcript_id "Ledus.C10G002500.t1"; gene_id "Ledus.C10G002500"
Ledus.C10	AUGUSTUS	CDS	331722	333136	1	+	2	transcript_id "Ledus.C10G002500.t1"; gene_id "Ledus.C10G002500"
Ledus.C10	AUGUSTUS	exon	331722	333136	.	+	.	transcript_id "Ledus.C10G002500.t1"; gene_id "Ledus.C10G002500"
Ledus.C10	AUGUSTUS	stop_codon	333137	333139	.	+	0	transcript_id "Ledus.C10G002500.t1"; gene_id "Ledus.C10G002500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg5843.t1 is derived from g3285.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27258441	27259957	.	-	.	Ledus.S1G326400
Ledus.S1	AUGUSTUS	transcript	27258441	27259957	.	-	.	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	stop_codon	27258438	27258440	.	-	0	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27258441	27258509	0.71	-	0	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27258441	27258509	.	-	.	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27258510	27258596	.	-	.	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27258597	27258788	1	-	0	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27258597	27258788	.	-	.	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27258789	27258966	.	-	.	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27258967	27259222	0.94	-	1	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27258967	27259222	.	-	.	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27259223	27259326	.	-	.	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27259327	27259616	0.93	-	0	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27259327	27259616	.	-	.	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27259617	27259690	.	-	.	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27259691	27259957	1	-	0	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27259691	27259957	.	-	.	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	start_codon	27259955	27259957	.	-	0	transcript_id "Ledus.S1G326400.t1"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	transcript	27258441	27259957	.	-	.	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	stop_codon	27258438	27258440	.	-	0	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27258441	27258509	0.73	-	0	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27258441	27258509	.	-	.	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27258510	27258596	.	-	.	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27258597	27258779	1	-	0	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27258597	27258779	.	-	.	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27258780	27258966	.	-	.	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27258967	27259222	0.94	-	1	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27258967	27259222	.	-	.	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27259223	27259326	.	-	.	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27259327	27259616	0.88	-	0	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27259327	27259616	.	-	.	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27259617	27259690	.	-	.	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27259691	27259957	0.98	-	0	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27259691	27259957	.	-	.	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	start_codon	27259955	27259957	.	-	0	transcript_id "Ledus.S1G326400.t2"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	transcript	27258441	27259957	.	-	.	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	stop_codon	27258438	27258440	.	-	0	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27258441	27258509	0.71	-	0	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27258441	27258509	.	-	.	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27258510	27258596	.	-	.	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27258597	27258788	1	-	0	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27258597	27258788	.	-	.	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27258789	27258966	.	-	.	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27258967	27259222	0.78	-	1	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27258967	27259222	.	-	.	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27259223	27259326	.	-	.	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27259327	27259416	0.22	-	1	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27259327	27259416	.	-	.	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27259417	27259571	.	-	.	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27259572	27259606	0.6	-	0	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27259572	27259606	.	-	.	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	intron	27259607	27259690	.	-	.	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	CDS	27259691	27259957	0.95	-	0	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	exon	27259691	27259957	.	-	.	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
Ledus.S1	AUGUSTUS	start_codon	27259955	27259957	.	-	0	transcript_id "Ledus.S1G326400.t3"; gene_id "Ledus.S1G326400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12014.t1 is derived from g5633.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8679242	8687506	.	-	.	Ledus.S4G117000
Ledus.S4	AUGUSTUS	transcript	8679242	8687506	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	stop_codon	8679239	8679241	.	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8679242	8679304	0.98	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8679242	8679304	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8679305	8679382	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8679383	8679457	1	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8679383	8679457	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8679458	8679542	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8679543	8679621	1	-	1	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8679543	8679621	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8679622	8679708	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8679709	8679826	1	-	2	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8679709	8679826	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8679827	8679910	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8679911	8679995	1	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8679911	8679995	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8679996	8680104	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8680105	8680246	1	-	1	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8680105	8680246	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8680247	8680337	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8680338	8680538	1	-	1	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8680338	8680538	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8680539	8680638	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8680639	8680772	1	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8680639	8680772	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8680773	8680971	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8680972	8681070	1	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8680972	8681070	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8681071	8681162	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8681163	8681197	1	-	2	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8681163	8681197	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8681198	8681337	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8681338	8681463	0.49	-	2	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8681338	8681463	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8681464	8681567	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8681568	8681625	0.99	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8681568	8681625	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8681626	8681746	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8681747	8681848	0.77	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8681747	8681848	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8681849	8682012	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8682013	8682120	0.78	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8682013	8682120	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8682121	8682286	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8682287	8682379	1	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8682287	8682379	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8682380	8682503	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8682504	8682604	0.99	-	2	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8682504	8682604	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8682605	8682714	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8682715	8682991	0.54	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8682715	8682991	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8682992	8683153	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8683154	8683292	1	-	1	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8683154	8683292	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8683293	8683453	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8683454	8683584	0.76	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8683454	8683584	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8683585	8683814	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8683815	8683911	0.9	-	1	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8683815	8683911	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8683912	8683989	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8683990	8684045	1	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8683990	8684045	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8684046	8684153	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8684154	8684238	0.59	-	1	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8684154	8684238	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8684239	8684338	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8684339	8684383	0.99	-	1	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8684339	8684383	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8684384	8685451	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8685452	8685579	0.64	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8685452	8685579	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8685580	8685855	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8685856	8685981	0.87	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8685856	8685981	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8685982	8686056	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8686057	8686313	0.84	-	2	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8686057	8686313	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8686314	8686453	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8686454	8686666	0.85	-	2	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8686454	8686666	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8686667	8686952	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8686953	8687094	0.74	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8686953	8687094	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8687095	8687259	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8687260	8687333	0.56	-	2	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8687260	8687333	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	intron	8687334	8687475	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	CDS	8687476	8687506	0.33	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	exon	8687476	8687506	.	-	.	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
Ledus.S4	AUGUSTUS	start_codon	8687504	8687506	.	-	0	transcript_id "Ledus.S4G117000.t1"; gene_id "Ledus.S4G117000"
# This transcript jg745.t2 is derived from g7606.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg746.t1 is derived from g7607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4769094	4769978	.	+	.	Ledus.S2G062800
Ledus.S2	AUGUSTUS	transcript	4769094	4769978	.	+	.	transcript_id "Ledus.S2G062800.t1"; gene_id "Ledus.S2G062800"
Ledus.S2	AUGUSTUS	start_codon	4769094	4769096	.	+	0	transcript_id "Ledus.S2G062800.t1"; gene_id "Ledus.S2G062800"
Ledus.S2	AUGUSTUS	CDS	4769094	4769201	1	+	0	transcript_id "Ledus.S2G062800.t1"; gene_id "Ledus.S2G062800"
Ledus.S2	AUGUSTUS	exon	4769094	4769201	.	+	.	transcript_id "Ledus.S2G062800.t1"; gene_id "Ledus.S2G062800"
Ledus.S2	AUGUSTUS	intron	4769202	4769299	.	+	.	transcript_id "Ledus.S2G062800.t1"; gene_id "Ledus.S2G062800"
Ledus.S2	AUGUSTUS	CDS	4769300	4769445	1	+	0	transcript_id "Ledus.S2G062800.t1"; gene_id "Ledus.S2G062800"
Ledus.S2	AUGUSTUS	exon	4769300	4769445	.	+	.	transcript_id "Ledus.S2G062800.t1"; gene_id "Ledus.S2G062800"
Ledus.S2	AUGUSTUS	intron	4769446	4769536	.	+	.	transcript_id "Ledus.S2G062800.t1"; gene_id "Ledus.S2G062800"
Ledus.S2	AUGUSTUS	CDS	4769537	4769978	1	+	1	transcript_id "Ledus.S2G062800.t1"; gene_id "Ledus.S2G062800"
Ledus.S2	AUGUSTUS	exon	4769537	4769978	.	+	.	transcript_id "Ledus.S2G062800.t1"; gene_id "Ledus.S2G062800"
Ledus.S2	AUGUSTUS	stop_codon	4769979	4769981	.	+	0	transcript_id "Ledus.S2G062800.t1"; gene_id "Ledus.S2G062800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9920.t1 is derived from g10950.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11223072	11228976	.	-	.	Ledus.S3G139700
Ledus.S3	AUGUSTUS	transcript	11223072	11228976	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	stop_codon	11223069	11223071	.	-	0	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223072	11223158	1	-	0	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223072	11223158	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11223159	11223237	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223238	11223369	1	-	0	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223238	11223369	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11223370	11223452	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223453	11223549	1	-	1	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223453	11223549	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11223550	11223640	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223641	11223810	1	-	0	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223641	11223810	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11223811	11223901	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223902	11225219	1	-	1	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223902	11225219	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11225220	11225334	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11225335	11226026	0.97	-	0	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11225335	11226026	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11226027	11226174	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11226175	11226513	0.98	-	0	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11226175	11226513	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11226514	11226655	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11226656	11226915	0.99	-	2	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11226656	11226915	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11226916	11227005	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11227006	11227186	0.99	-	0	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11227006	11227186	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11227187	11227392	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11227393	11227542	0.67	-	0	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11227393	11227542	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11227543	11227719	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11227720	11227858	0.43	-	1	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11227720	11227858	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11227859	11228038	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11228039	11228976	0.57	-	0	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11228039	11228976	.	-	.	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	start_codon	11228974	11228976	.	-	0	transcript_id "Ledus.S3G139700.t1"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	transcript	11223072	11228976	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	stop_codon	11223069	11223071	.	-	0	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223072	11223158	1	-	0	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223072	11223158	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11223159	11223237	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223238	11223298	1	-	1	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223238	11223298	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11223299	11223452	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223453	11223549	1	-	2	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223453	11223549	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11223550	11223704	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223705	11223810	1	-	0	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223705	11223810	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11223811	11223901	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223902	11225219	0.99	-	1	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223902	11225219	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11225220	11225334	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11225335	11226026	0.97	-	0	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11225335	11226026	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11226027	11226174	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11226175	11226513	0.97	-	0	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11226175	11226513	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11226514	11226655	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11226656	11226915	1	-	2	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11226656	11226915	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11226916	11227005	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11227006	11227186	1	-	0	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11227006	11227186	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11227187	11227392	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11227393	11227542	0.68	-	0	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11227393	11227542	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11227543	11227719	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11227720	11227858	0.39	-	1	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11227720	11227858	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11227859	11228038	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11228039	11228976	0.55	-	0	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11228039	11228976	.	-	.	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	start_codon	11228974	11228976	.	-	0	transcript_id "Ledus.S3G139700.t2"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	transcript	11223072	11228976	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	stop_codon	11223069	11223071	.	-	0	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223072	11223158	1	-	0	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223072	11223158	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11223159	11223237	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223238	11223369	0.9	-	0	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223238	11223369	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11223370	11223452	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223453	11223549	0.9	-	1	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223453	11223549	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11223550	11223640	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223641	11223810	0.9	-	0	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223641	11223810	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11223811	11223901	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11223902	11225219	1	-	1	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11223902	11225219	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11225220	11225334	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11225335	11226026	0.99	-	0	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11225335	11226026	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11226027	11226174	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11226175	11226513	0.93	-	0	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11226175	11226513	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11226514	11226655	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11226656	11226915	0.93	-	2	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11226656	11226915	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11226916	11227005	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11227006	11227173	0.81	-	2	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11227006	11227173	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11227174	11227392	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11227393	11227436	0.4	-	1	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11227393	11227436	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11227437	11227629	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11227630	11227719	0.76	-	1	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11227630	11227719	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	intron	11227720	11228038	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	CDS	11228039	11228976	0.59	-	0	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	exon	11228039	11228976	.	-	.	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
Ledus.S3	AUGUSTUS	start_codon	11228974	11228976	.	-	0	transcript_id "Ledus.S3G139700.t3"; gene_id "Ledus.S3G139700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4484.t1 is derived from g1920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17283180	17284334	.	-	.	Ledus.S1G190500
Ledus.S1	AUGUSTUS	transcript	17283180	17283785	.	-	.	transcript_id "Ledus.S1G190500.t1"; gene_id "Ledus.S1G190500"
Ledus.S1	AUGUSTUS	stop_codon	17283177	17283179	.	-	0	transcript_id "Ledus.S1G190500.t1"; gene_id "Ledus.S1G190500"
Ledus.S1	AUGUSTUS	CDS	17283180	17283785	0.89	-	0	transcript_id "Ledus.S1G190500.t1"; gene_id "Ledus.S1G190500"
Ledus.S1	AUGUSTUS	exon	17283180	17283785	.	-	.	transcript_id "Ledus.S1G190500.t1"; gene_id "Ledus.S1G190500"
Ledus.S1	AUGUSTUS	start_codon	17283783	17283785	.	-	0	transcript_id "Ledus.S1G190500.t1"; gene_id "Ledus.S1G190500"
Ledus.S1	AUGUSTUS	transcript	17283180	17284334	.	-	.	transcript_id "Ledus.S1G190500.t2"; gene_id "Ledus.S1G190500"
Ledus.S1	AUGUSTUS	stop_codon	17283177	17283179	.	-	0	transcript_id "Ledus.S1G190500.t2"; gene_id "Ledus.S1G190500"
Ledus.S1	AUGUSTUS	CDS	17283180	17284334	0.79	-	0	transcript_id "Ledus.S1G190500.t2"; gene_id "Ledus.S1G190500"
Ledus.S1	AUGUSTUS	exon	17283180	17284334	.	-	.	transcript_id "Ledus.S1G190500.t2"; gene_id "Ledus.S1G190500"
Ledus.S1	AUGUSTUS	start_codon	17284332	17284334	.	-	0	transcript_id "Ledus.S1G190500.t2"; gene_id "Ledus.S1G190500"
# This transcript jg4749.t2 is derived from g2187.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4750.t1 is derived from g2188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19598730	19600926	.	+	.	Ledus.S1G217100
Ledus.S1	AUGUSTUS	transcript	19598730	19600926	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	start_codon	19598730	19598732	.	+	0	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	CDS	19598730	19598881	1	+	0	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	exon	19598730	19598881	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	intron	19598882	19599048	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	CDS	19599049	19599184	1	+	1	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	exon	19599049	19599184	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	intron	19599185	19599343	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	CDS	19599344	19599423	1	+	0	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	exon	19599344	19599423	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	intron	19599424	19599560	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	CDS	19599561	19599651	0.61	+	1	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	exon	19599561	19599651	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	intron	19599652	19599771	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	CDS	19599772	19599855	0.98	+	0	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	exon	19599772	19599855	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	intron	19599856	19599968	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	CDS	19599969	19600037	1	+	0	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	exon	19599969	19600037	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	intron	19600038	19600127	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	CDS	19600128	19600189	1	+	0	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	exon	19600128	19600189	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	intron	19600190	19600311	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	CDS	19600312	19600399	1	+	1	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	exon	19600312	19600399	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	intron	19600400	19600517	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	CDS	19600518	19600559	0.8	+	0	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	exon	19600518	19600559	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	intron	19600560	19600665	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	CDS	19600666	19600713	1	+	0	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	exon	19600666	19600713	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	intron	19600714	19600797	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	CDS	19600798	19600926	0.99	+	0	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	exon	19600798	19600926	.	+	.	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
Ledus.S1	AUGUSTUS	stop_codon	19600927	19600929	.	+	0	transcript_id "Ledus.S1G217100.t1"; gene_id "Ledus.S1G217100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7593.t1 is derived from g12264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4271673	4273470	.	-	.	Ledus.S5G037100
Ledus.S5	AUGUSTUS	transcript	4271673	4273470	.	-	.	transcript_id "Ledus.S5G037100.t1"; gene_id "Ledus.S5G037100"
Ledus.S5	AUGUSTUS	stop_codon	4271670	4271672	.	-	0	transcript_id "Ledus.S5G037100.t1"; gene_id "Ledus.S5G037100"
Ledus.S5	AUGUSTUS	CDS	4271673	4271675	0.88	-	0	transcript_id "Ledus.S5G037100.t1"; gene_id "Ledus.S5G037100"
Ledus.S5	AUGUSTUS	exon	4271673	4271675	.	-	.	transcript_id "Ledus.S5G037100.t1"; gene_id "Ledus.S5G037100"
Ledus.S5	AUGUSTUS	intron	4271676	4271763	.	-	.	transcript_id "Ledus.S5G037100.t1"; gene_id "Ledus.S5G037100"
Ledus.S5	AUGUSTUS	CDS	4271764	4273131	0.73	-	0	transcript_id "Ledus.S5G037100.t1"; gene_id "Ledus.S5G037100"
Ledus.S5	AUGUSTUS	exon	4271764	4273131	.	-	.	transcript_id "Ledus.S5G037100.t1"; gene_id "Ledus.S5G037100"
Ledus.S5	AUGUSTUS	intron	4273132	4273236	.	-	.	transcript_id "Ledus.S5G037100.t1"; gene_id "Ledus.S5G037100"
Ledus.S5	AUGUSTUS	CDS	4273237	4273470	0.9	-	0	transcript_id "Ledus.S5G037100.t1"; gene_id "Ledus.S5G037100"
Ledus.S5	AUGUSTUS	exon	4273237	4273470	.	-	.	transcript_id "Ledus.S5G037100.t1"; gene_id "Ledus.S5G037100"
Ledus.S5	AUGUSTUS	start_codon	4273468	4273470	.	-	0	transcript_id "Ledus.S5G037100.t1"; gene_id "Ledus.S5G037100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3921.t1 is derived from g1357.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13568627	13571324	.	-	.	Ledus.S1G134200
Ledus.S1	AUGUSTUS	transcript	13568627	13571324	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	stop_codon	13568624	13568626	.	-	0	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13568627	13568707	1	-	0	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13568627	13568707	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13568708	13568831	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13568832	13568912	1	-	0	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13568832	13568912	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13568913	13568988	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13568989	13569048	1	-	0	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13568989	13569048	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13569049	13569156	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13569157	13569215	1	-	2	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13569157	13569215	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13569216	13569374	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13569375	13569448	1	-	1	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13569375	13569448	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13569449	13569585	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13569586	13569632	1	-	0	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13569586	13569632	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13569633	13569904	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13569905	13569988	1	-	0	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13569905	13569988	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13569989	13570070	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13570071	13570223	1	-	0	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13570071	13570223	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13570224	13570376	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13570377	13570511	1	-	0	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13570377	13570511	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13570512	13570624	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13570625	13570734	0.89	-	2	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13570625	13570734	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13570735	13570891	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13570892	13571076	1	-	1	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13570892	13571076	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13571077	13571286	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13571287	13571324	1	-	0	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13571287	13571324	.	-	.	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	start_codon	13571322	13571324	.	-	0	transcript_id "Ledus.S1G134200.t1"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	transcript	13568627	13571324	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	stop_codon	13568624	13568626	.	-	0	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13568627	13568707	1	-	0	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13568627	13568707	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13568708	13568831	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13568832	13568912	1	-	0	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13568832	13568912	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13568913	13568988	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13568989	13569048	1	-	0	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13568989	13569048	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13569049	13569156	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13569157	13569215	1	-	2	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13569157	13569215	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13569216	13569374	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13569375	13569448	1	-	1	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13569375	13569448	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13569449	13569585	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13569586	13569632	1	-	0	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13569586	13569632	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13569633	13569904	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13569905	13569988	1	-	0	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13569905	13569988	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13569989	13570070	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13570071	13570223	1	-	0	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13570071	13570223	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13570224	13570376	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13570377	13570511	1	-	0	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13570377	13570511	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13570512	13570624	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13570625	13570734	0.87	-	2	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13570625	13570734	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13570735	13570891	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13570892	13571076	0.99	-	1	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13570892	13571076	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	intron	13571077	13571292	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	CDS	13571293	13571324	0.99	-	0	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	exon	13571293	13571324	.	-	.	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
Ledus.S1	AUGUSTUS	start_codon	13571322	13571324	.	-	0	transcript_id "Ledus.S1G134200.t2"; gene_id "Ledus.S1G134200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2835.t1 is derived from g269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4019761	4023232	.	-	.	Ledus.S1G025600
Ledus.S1	AUGUSTUS	transcript	4019761	4023232	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	stop_codon	4019758	4019760	.	-	0	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4019761	4019916	0.98	-	0	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4019761	4019916	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	intron	4019917	4020035	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4020036	4020164	1	-	0	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4020036	4020164	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	intron	4020165	4020299	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4020300	4020395	1	-	0	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4020300	4020395	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	intron	4020396	4020474	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4020475	4020631	0.91	-	1	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4020475	4020631	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	intron	4020632	4020733	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4020734	4020936	0.72	-	0	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4020734	4020936	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	intron	4020937	4021014	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4021015	4021153	1	-	1	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4021015	4021153	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	intron	4021154	4021253	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4021254	4021389	1	-	2	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4021254	4021389	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	intron	4021390	4021516	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4021517	4021685	1	-	0	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4021517	4021685	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	intron	4021686	4021777	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4021778	4021915	1	-	0	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4021778	4021915	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	intron	4021916	4022048	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4022049	4022152	1	-	2	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4022049	4022152	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	intron	4022153	4022302	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4022303	4022526	1	-	1	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4022303	4022526	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	intron	4022527	4022613	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4022614	4022919	1	-	1	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4022614	4022919	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	intron	4022920	4023038	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	CDS	4023039	4023232	0.99	-	0	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	exon	4023039	4023232	.	-	.	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
Ledus.S1	AUGUSTUS	start_codon	4023230	4023232	.	-	0	transcript_id "Ledus.S1G025600.t1"; gene_id "Ledus.S1G025600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4097.t1 is derived from g1533.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14673415	14675195	.	-	.	Ledus.S1G151800
Ledus.S1	AUGUSTUS	transcript	14673415	14675195	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	stop_codon	14673412	14673414	.	-	0	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	CDS	14673415	14673600	0.87	-	0	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	exon	14673415	14673600	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	intron	14673601	14673734	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	CDS	14673735	14673895	0.76	-	2	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	exon	14673735	14673895	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	intron	14673896	14673998	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	CDS	14673999	14674115	0.99	-	2	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	exon	14673999	14674115	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	intron	14674116	14674203	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	CDS	14674204	14674369	1	-	0	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	exon	14674204	14674369	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	intron	14674370	14674448	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	CDS	14674449	14674585	1	-	2	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	exon	14674449	14674585	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	intron	14674586	14674751	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	CDS	14674752	14674933	1	-	1	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	exon	14674752	14674933	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	intron	14674934	14675004	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	CDS	14675005	14675195	0.99	-	0	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	exon	14675005	14675195	.	-	.	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
Ledus.S1	AUGUSTUS	start_codon	14675193	14675195	.	-	0	transcript_id "Ledus.S1G151800.t1"; gene_id "Ledus.S1G151800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10521.t1 is derived from g11551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15814150	15814449	.	+	.	Ledus.S3G199800
Ledus.S3	AUGUSTUS	transcript	15814150	15814449	.	+	.	transcript_id "Ledus.S3G199800.t1"; gene_id "Ledus.S3G199800"
Ledus.S3	AUGUSTUS	start_codon	15814150	15814152	.	+	0	transcript_id "Ledus.S3G199800.t1"; gene_id "Ledus.S3G199800"
Ledus.S3	AUGUSTUS	CDS	15814150	15814449	0.75	+	0	transcript_id "Ledus.S3G199800.t1"; gene_id "Ledus.S3G199800"
Ledus.S3	AUGUSTUS	exon	15814150	15814449	.	+	.	transcript_id "Ledus.S3G199800.t1"; gene_id "Ledus.S3G199800"
Ledus.S3	AUGUSTUS	stop_codon	15814450	15814452	.	+	0	transcript_id "Ledus.S3G199800.t1"; gene_id "Ledus.S3G199800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10202.t1 is derived from g11232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13536980	13543659	.	+	.	Ledus.S3G167900
Ledus.S3	AUGUSTUS	transcript	13536980	13543659	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	start_codon	13536980	13536982	.	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13536980	13537339	0.71	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13536980	13537339	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13537340	13537710	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13537711	13537842	1	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13537711	13537842	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13537843	13537958	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13537959	13538065	1	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13537959	13538065	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13538066	13538156	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13538157	13538266	1	+	1	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13538157	13538266	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13538267	13538466	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13538467	13538564	0.98	+	2	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13538467	13538564	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13538565	13538669	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13538670	13538849	0.97	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13538670	13538849	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13538850	13538945	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13538946	13539052	0.73	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13538946	13539052	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13539053	13539240	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13539241	13539415	0.74	+	1	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13539241	13539415	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13539416	13539501	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13539502	13539784	0.99	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13539502	13539784	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13539785	13539907	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13539908	13539981	0.99	+	2	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13539908	13539981	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13539982	13540087	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13540088	13540308	0.8	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13540088	13540308	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13540309	13540502	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13540503	13540590	1	+	1	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13540503	13540590	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13540591	13540763	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13540764	13540857	1	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13540764	13540857	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13540858	13541062	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13541063	13541251	1	+	2	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13541063	13541251	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13541252	13541346	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13541347	13541384	1	+	2	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13541347	13541384	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13541385	13541548	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13541549	13541625	1	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13541549	13541625	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13541626	13541791	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13541792	13541884	1	+	1	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13541792	13541884	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13541885	13541969	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13541970	13542039	1	+	1	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13541970	13542039	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13542040	13542115	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13542116	13542173	1	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13542116	13542173	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13542174	13542293	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13542294	13542352	1	+	2	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13542294	13542352	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13542353	13542546	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13542547	13542712	1	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13542547	13542712	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13542713	13542843	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13542844	13543022	0.98	+	2	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13542844	13543022	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13543023	13543125	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13543126	13543344	0.98	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13543126	13543344	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13543345	13543436	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13543437	13543544	1	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13543437	13543544	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	intron	13543545	13543641	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	CDS	13543642	13543659	1	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	exon	13543642	13543659	.	+	.	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
Ledus.S3	AUGUSTUS	stop_codon	13543660	13543662	.	+	0	transcript_id "Ledus.S3G167900.t1"; gene_id "Ledus.S3G167900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1690.t1 is derived from g8551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11854575	11855435	.	+	.	Ledus.S2G157200
Ledus.S2	AUGUSTUS	transcript	11854575	11855435	.	+	.	transcript_id "Ledus.S2G157200.t1"; gene_id "Ledus.S2G157200"
Ledus.S2	AUGUSTUS	start_codon	11854575	11854577	.	+	0	transcript_id "Ledus.S2G157200.t1"; gene_id "Ledus.S2G157200"
Ledus.S2	AUGUSTUS	CDS	11854575	11855435	0.54	+	0	transcript_id "Ledus.S2G157200.t1"; gene_id "Ledus.S2G157200"
Ledus.S2	AUGUSTUS	exon	11854575	11855435	.	+	.	transcript_id "Ledus.S2G157200.t1"; gene_id "Ledus.S2G157200"
Ledus.S2	AUGUSTUS	stop_codon	11855436	11855438	.	+	0	transcript_id "Ledus.S2G157200.t1"; gene_id "Ledus.S2G157200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8260.t1 is derived from g12931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10269773	10270678	.	-	.	Ledus.S5G103800
Ledus.S5	AUGUSTUS	transcript	10269773	10270678	.	-	.	transcript_id "Ledus.S5G103800.t1"; gene_id "Ledus.S5G103800"
Ledus.S5	AUGUSTUS	stop_codon	10269770	10269772	.	-	0	transcript_id "Ledus.S5G103800.t1"; gene_id "Ledus.S5G103800"
Ledus.S5	AUGUSTUS	CDS	10269773	10270112	1	-	1	transcript_id "Ledus.S5G103800.t1"; gene_id "Ledus.S5G103800"
Ledus.S5	AUGUSTUS	exon	10269773	10270112	.	-	.	transcript_id "Ledus.S5G103800.t1"; gene_id "Ledus.S5G103800"
Ledus.S5	AUGUSTUS	intron	10270113	10270238	.	-	.	transcript_id "Ledus.S5G103800.t1"; gene_id "Ledus.S5G103800"
Ledus.S5	AUGUSTUS	CDS	10270239	10270678	1	-	0	transcript_id "Ledus.S5G103800.t1"; gene_id "Ledus.S5G103800"
Ledus.S5	AUGUSTUS	exon	10270239	10270678	.	-	.	transcript_id "Ledus.S5G103800.t1"; gene_id "Ledus.S5G103800"
Ledus.S5	AUGUSTUS	start_codon	10270676	10270678	.	-	0	transcript_id "Ledus.S5G103800.t1"; gene_id "Ledus.S5G103800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2536.t1 is derived from g9399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18750444	18750944	.	-	.	Ledus.S2G241800
Ledus.S2	AUGUSTUS	transcript	18750444	18750944	.	-	.	transcript_id "Ledus.S2G241800.t1"; gene_id "Ledus.S2G241800"
Ledus.S2	AUGUSTUS	stop_codon	18750441	18750443	.	-	0	transcript_id "Ledus.S2G241800.t1"; gene_id "Ledus.S2G241800"
Ledus.S2	AUGUSTUS	CDS	18750444	18750944	1	-	0	transcript_id "Ledus.S2G241800.t1"; gene_id "Ledus.S2G241800"
Ledus.S2	AUGUSTUS	exon	18750444	18750944	.	-	.	transcript_id "Ledus.S2G241800.t1"; gene_id "Ledus.S2G241800"
Ledus.S2	AUGUSTUS	start_codon	18750942	18750944	.	-	0	transcript_id "Ledus.S2G241800.t1"; gene_id "Ledus.S2G241800"
# This transcript jg7800.t2 is derived from g12471.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7800.t3 is derived from g12471.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7801.t1 is derived from g12472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6856834	6859815	.	+	.	Ledus.S5G057900
Ledus.S5	AUGUSTUS	transcript	6856834	6859815	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	start_codon	6856834	6856836	.	+	0	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6856834	6856975	0.81	+	0	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6856834	6856975	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	intron	6856976	6857051	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6857052	6857090	0.66	+	2	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6857052	6857090	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	intron	6857091	6857350	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6857351	6857371	0.79	+	2	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6857351	6857371	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	intron	6857372	6857564	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6857565	6857713	0.77	+	2	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6857565	6857713	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	intron	6857714	6857843	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6857844	6857890	0.97	+	0	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6857844	6857890	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	intron	6857891	6857997	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6857998	6858102	0.97	+	1	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6857998	6858102	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	intron	6858103	6858303	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6858304	6858384	1	+	1	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6858304	6858384	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	intron	6858385	6858511	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6858512	6858623	1	+	1	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6858512	6858623	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	intron	6858624	6858801	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6858802	6858864	1	+	0	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6858802	6858864	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	intron	6858865	6858947	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6858948	6859035	1	+	0	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6858948	6859035	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	intron	6859036	6859108	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6859109	6859206	1	+	2	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6859109	6859206	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	intron	6859207	6859447	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6859448	6859553	0.91	+	0	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6859448	6859553	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	intron	6859554	6859753	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	CDS	6859754	6859815	0.89	+	2	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	exon	6859754	6859815	.	+	.	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
Ledus.S5	AUGUSTUS	stop_codon	6859816	6859818	.	+	0	transcript_id "Ledus.S5G057900.t1"; gene_id "Ledus.S5G057900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5699.t1 is derived from g3138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26011938	26013337	.	+	.	Ledus.S1G312000
Ledus.S1	AUGUSTUS	transcript	26011938	26013337	.	+	.	transcript_id "Ledus.S1G312000.t1"; gene_id "Ledus.S1G312000"
Ledus.S1	AUGUSTUS	start_codon	26011938	26011940	.	+	0	transcript_id "Ledus.S1G312000.t1"; gene_id "Ledus.S1G312000"
Ledus.S1	AUGUSTUS	CDS	26011938	26012099	0.8	+	0	transcript_id "Ledus.S1G312000.t1"; gene_id "Ledus.S1G312000"
Ledus.S1	AUGUSTUS	exon	26011938	26012099	.	+	.	transcript_id "Ledus.S1G312000.t1"; gene_id "Ledus.S1G312000"
Ledus.S1	AUGUSTUS	intron	26012100	26012209	.	+	.	transcript_id "Ledus.S1G312000.t1"; gene_id "Ledus.S1G312000"
Ledus.S1	AUGUSTUS	CDS	26012210	26013337	1	+	0	transcript_id "Ledus.S1G312000.t1"; gene_id "Ledus.S1G312000"
Ledus.S1	AUGUSTUS	exon	26012210	26013337	.	+	.	transcript_id "Ledus.S1G312000.t1"; gene_id "Ledus.S1G312000"
Ledus.S1	AUGUSTUS	stop_codon	26013338	26013340	.	+	0	transcript_id "Ledus.S1G312000.t1"; gene_id "Ledus.S1G312000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg340.t1 is derived from g7201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1825305	1827757	.	+	.	Ledus.S2G022200
Ledus.S2	AUGUSTUS	transcript	1825305	1827757	.	+	.	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	start_codon	1825305	1825307	.	+	0	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	CDS	1825305	1826751	1	+	0	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	exon	1825305	1826751	.	+	.	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	intron	1826752	1826836	.	+	.	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	CDS	1826837	1827183	0.83	+	2	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	exon	1826837	1827183	.	+	.	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	intron	1827184	1827407	.	+	.	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	CDS	1827408	1827530	0.75	+	0	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	exon	1827408	1827530	.	+	.	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	intron	1827531	1827604	.	+	.	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	CDS	1827605	1827757	0.82	+	0	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	exon	1827605	1827757	.	+	.	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
Ledus.S2	AUGUSTUS	stop_codon	1827758	1827760	.	+	0	transcript_id "Ledus.S2G022200.t1"; gene_id "Ledus.S2G022200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2951.t1 is derived from g386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4826939	4828576	.	-	.	Ledus.S1G037200
Ledus.S1	AUGUSTUS	transcript	4826939	4828576	.	-	.	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	stop_codon	4826936	4826938	.	-	0	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	CDS	4826939	4827026	1	-	1	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	exon	4826939	4827026	.	-	.	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	intron	4827027	4827304	.	-	.	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	CDS	4827305	4827464	1	-	2	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	exon	4827305	4827464	.	-	.	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	intron	4827465	4827547	.	-	.	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	CDS	4827548	4827751	1	-	2	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	exon	4827548	4827751	.	-	.	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	intron	4827752	4827841	.	-	.	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	CDS	4827842	4828073	1	-	0	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	exon	4827842	4828073	.	-	.	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	intron	4828074	4828169	.	-	.	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	CDS	4828170	4828304	1	-	0	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	exon	4828170	4828304	.	-	.	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	intron	4828305	4828396	.	-	.	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	CDS	4828397	4828576	0.97	-	0	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	exon	4828397	4828576	.	-	.	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
Ledus.S1	AUGUSTUS	start_codon	4828574	4828576	.	-	0	transcript_id "Ledus.S1G037200.t1"; gene_id "Ledus.S1G037200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1107.t1 is derived from g7968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7556663	7556986	.	-	.	Ledus.S2G098900
Ledus.S2	AUGUSTUS	transcript	7556663	7556986	.	-	.	transcript_id "Ledus.S2G098900.t1"; gene_id "Ledus.S2G098900"
Ledus.S2	AUGUSTUS	stop_codon	7556660	7556662	.	-	0	transcript_id "Ledus.S2G098900.t1"; gene_id "Ledus.S2G098900"
Ledus.S2	AUGUSTUS	CDS	7556663	7556986	0.6	-	0	transcript_id "Ledus.S2G098900.t1"; gene_id "Ledus.S2G098900"
Ledus.S2	AUGUSTUS	exon	7556663	7556986	.	-	.	transcript_id "Ledus.S2G098900.t1"; gene_id "Ledus.S2G098900"
Ledus.S2	AUGUSTUS	start_codon	7556984	7556986	.	-	0	transcript_id "Ledus.S2G098900.t1"; gene_id "Ledus.S2G098900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7153.t1 is derived from g6684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1818408	1819082	.	+	.	Ledus.C7G021400
Ledus.C7	AUGUSTUS	transcript	1818408	1819082	.	+	.	transcript_id "Ledus.C7G021400.t1"; gene_id "Ledus.C7G021400"
Ledus.C7	AUGUSTUS	start_codon	1818408	1818410	.	+	0	transcript_id "Ledus.C7G021400.t1"; gene_id "Ledus.C7G021400"
Ledus.C7	AUGUSTUS	CDS	1818408	1818668	0.34	+	0	transcript_id "Ledus.C7G021400.t1"; gene_id "Ledus.C7G021400"
Ledus.C7	AUGUSTUS	exon	1818408	1818668	.	+	.	transcript_id "Ledus.C7G021400.t1"; gene_id "Ledus.C7G021400"
Ledus.C7	AUGUSTUS	intron	1818669	1819001	.	+	.	transcript_id "Ledus.C7G021400.t1"; gene_id "Ledus.C7G021400"
Ledus.C7	AUGUSTUS	CDS	1819002	1819082	0.61	+	0	transcript_id "Ledus.C7G021400.t1"; gene_id "Ledus.C7G021400"
Ledus.C7	AUGUSTUS	exon	1819002	1819082	.	+	.	transcript_id "Ledus.C7G021400.t1"; gene_id "Ledus.C7G021400"
Ledus.C7	AUGUSTUS	stop_codon	1819083	1819085	.	+	0	transcript_id "Ledus.C7G021400.t1"; gene_id "Ledus.C7G021400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8212.t1 is derived from g12883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9902419	9904131	.	-	.	Ledus.S5G099000
Ledus.S5	AUGUSTUS	transcript	9902419	9904131	.	-	.	transcript_id "Ledus.S5G099000.t1"; gene_id "Ledus.S5G099000"
Ledus.S5	AUGUSTUS	stop_codon	9902416	9902418	.	-	0	transcript_id "Ledus.S5G099000.t1"; gene_id "Ledus.S5G099000"
Ledus.S5	AUGUSTUS	CDS	9902419	9904131	1	-	0	transcript_id "Ledus.S5G099000.t1"; gene_id "Ledus.S5G099000"
Ledus.S5	AUGUSTUS	exon	9902419	9904131	.	-	.	transcript_id "Ledus.S5G099000.t1"; gene_id "Ledus.S5G099000"
Ledus.S5	AUGUSTUS	start_codon	9904129	9904131	.	-	0	transcript_id "Ledus.S5G099000.t1"; gene_id "Ledus.S5G099000"
# This transcript jg1880.t1 is derived from g8743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13154860	13155358	.	-	.	Ledus.S2G176200
Ledus.S2	AUGUSTUS	transcript	13154860	13155358	.	-	.	transcript_id "Ledus.S2G176200.t1"; gene_id "Ledus.S2G176200"
Ledus.S2	AUGUSTUS	stop_codon	13154857	13154859	.	-	0	transcript_id "Ledus.S2G176200.t1"; gene_id "Ledus.S2G176200"
Ledus.S2	AUGUSTUS	CDS	13154860	13154996	0.52	-	2	transcript_id "Ledus.S2G176200.t1"; gene_id "Ledus.S2G176200"
Ledus.S2	AUGUSTUS	exon	13154860	13154996	.	-	.	transcript_id "Ledus.S2G176200.t1"; gene_id "Ledus.S2G176200"
Ledus.S2	AUGUSTUS	intron	13154997	13155162	.	-	.	transcript_id "Ledus.S2G176200.t1"; gene_id "Ledus.S2G176200"
Ledus.S2	AUGUSTUS	CDS	13155163	13155358	0.47	-	0	transcript_id "Ledus.S2G176200.t1"; gene_id "Ledus.S2G176200"
Ledus.S2	AUGUSTUS	exon	13155163	13155358	.	-	.	transcript_id "Ledus.S2G176200.t1"; gene_id "Ledus.S2G176200"
Ledus.S2	AUGUSTUS	start_codon	13155356	13155358	.	-	0	transcript_id "Ledus.S2G176200.t1"; gene_id "Ledus.S2G176200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg546.t1 is derived from g7407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3151874	3154414	.	-	.	Ledus.S2G042800
Ledus.S2	AUGUSTUS	transcript	3151874	3154414	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	stop_codon	3151871	3151873	.	-	0	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	CDS	3151874	3151993	0.48	-	0	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	exon	3151874	3151993	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	intron	3151994	3152098	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	CDS	3152099	3152240	0.39	-	1	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	exon	3152099	3152240	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	intron	3152241	3152353	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	CDS	3152354	3152450	0.86	-	2	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	exon	3152354	3152450	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	intron	3152451	3152610	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	CDS	3152611	3152677	0.93	-	0	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	exon	3152611	3152677	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	intron	3152678	3152880	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	CDS	3152881	3153015	1	-	0	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	exon	3152881	3153015	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	intron	3153016	3153121	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	CDS	3153122	3153262	0.99	-	0	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	exon	3153122	3153262	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	intron	3153263	3153366	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	CDS	3153367	3153449	0.93	-	2	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	exon	3153367	3153449	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	intron	3153450	3153552	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	CDS	3153553	3153640	0.98	-	0	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	exon	3153553	3153640	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	intron	3153641	3153855	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	CDS	3153856	3154136	1	-	2	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	exon	3153856	3154136	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	intron	3154137	3154272	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	CDS	3154273	3154414	0.39	-	0	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	exon	3154273	3154414	.	-	.	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
Ledus.S2	AUGUSTUS	start_codon	3154412	3154414	.	-	0	transcript_id "Ledus.S2G042800.t1"; gene_id "Ledus.S2G042800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10165.t1 is derived from g11195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13423337	13426472	.	+	.	Ledus.S3G164200
Ledus.S3	AUGUSTUS	transcript	13423337	13426472	.	+	.	transcript_id "Ledus.S3G164200.t1"; gene_id "Ledus.S3G164200"
Ledus.S3	AUGUSTUS	start_codon	13423337	13423339	.	+	0	transcript_id "Ledus.S3G164200.t1"; gene_id "Ledus.S3G164200"
Ledus.S3	AUGUSTUS	CDS	13423337	13423340	0.4	+	0	transcript_id "Ledus.S3G164200.t1"; gene_id "Ledus.S3G164200"
Ledus.S3	AUGUSTUS	exon	13423337	13423340	.	+	.	transcript_id "Ledus.S3G164200.t1"; gene_id "Ledus.S3G164200"
Ledus.S3	AUGUSTUS	intron	13423341	13423428	.	+	.	transcript_id "Ledus.S3G164200.t1"; gene_id "Ledus.S3G164200"
Ledus.S3	AUGUSTUS	CDS	13423429	13426472	0.49	+	2	transcript_id "Ledus.S3G164200.t1"; gene_id "Ledus.S3G164200"
Ledus.S3	AUGUSTUS	exon	13423429	13426472	.	+	.	transcript_id "Ledus.S3G164200.t1"; gene_id "Ledus.S3G164200"
Ledus.S3	AUGUSTUS	stop_codon	13426473	13426475	.	+	0	transcript_id "Ledus.S3G164200.t1"; gene_id "Ledus.S3G164200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2688.t1 is derived from g121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1794734	1795406	.	-	.	Ledus.S1G010900
Ledus.S1	AUGUSTUS	transcript	1794734	1795406	.	-	.	transcript_id "Ledus.S1G010900.t1"; gene_id "Ledus.S1G010900"
Ledus.S1	AUGUSTUS	stop_codon	1794731	1794733	.	-	0	transcript_id "Ledus.S1G010900.t1"; gene_id "Ledus.S1G010900"
Ledus.S1	AUGUSTUS	CDS	1794734	1794822	0.47	-	2	transcript_id "Ledus.S1G010900.t1"; gene_id "Ledus.S1G010900"
Ledus.S1	AUGUSTUS	exon	1794734	1794822	.	-	.	transcript_id "Ledus.S1G010900.t1"; gene_id "Ledus.S1G010900"
Ledus.S1	AUGUSTUS	intron	1794823	1794963	.	-	.	transcript_id "Ledus.S1G010900.t1"; gene_id "Ledus.S1G010900"
Ledus.S1	AUGUSTUS	CDS	1794964	1795097	1	-	1	transcript_id "Ledus.S1G010900.t1"; gene_id "Ledus.S1G010900"
Ledus.S1	AUGUSTUS	exon	1794964	1795097	.	-	.	transcript_id "Ledus.S1G010900.t1"; gene_id "Ledus.S1G010900"
Ledus.S1	AUGUSTUS	intron	1795098	1795227	.	-	.	transcript_id "Ledus.S1G010900.t1"; gene_id "Ledus.S1G010900"
Ledus.S1	AUGUSTUS	CDS	1795228	1795406	0.8	-	0	transcript_id "Ledus.S1G010900.t1"; gene_id "Ledus.S1G010900"
Ledus.S1	AUGUSTUS	exon	1795228	1795406	.	-	.	transcript_id "Ledus.S1G010900.t1"; gene_id "Ledus.S1G010900"
Ledus.S1	AUGUSTUS	start_codon	1795404	1795406	.	-	0	transcript_id "Ledus.S1G010900.t1"; gene_id "Ledus.S1G010900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10009.t1 is derived from g11039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11851257	11855973	.	+	.	Ledus.S3G148600
Ledus.S3	AUGUSTUS	transcript	11851257	11855973	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	start_codon	11851257	11851259	.	+	0	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	CDS	11851257	11851424	0.86	+	0	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	exon	11851257	11851424	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	intron	11851425	11851574	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	CDS	11851575	11851653	1	+	0	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	exon	11851575	11851653	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	intron	11851654	11851861	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	CDS	11851862	11851956	1	+	2	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	exon	11851862	11851956	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	intron	11851957	11852052	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	CDS	11852053	11852124	0.79	+	0	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	exon	11852053	11852124	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	intron	11852125	11852226	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	CDS	11852227	11852336	0.99	+	0	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	exon	11852227	11852336	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	intron	11852337	11852509	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	CDS	11852510	11852623	1	+	1	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	exon	11852510	11852623	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	intron	11852624	11852794	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	CDS	11852795	11852890	1	+	1	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	exon	11852795	11852890	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	intron	11852891	11853046	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	CDS	11853047	11853115	1	+	1	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	exon	11853047	11853115	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	intron	11853116	11853285	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	CDS	11853286	11853374	1	+	1	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	exon	11853286	11853374	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	intron	11853375	11853562	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	CDS	11853563	11855973	0.97	+	2	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	exon	11853563	11855973	.	+	.	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
Ledus.S3	AUGUSTUS	stop_codon	11855974	11855976	.	+	0	transcript_id "Ledus.S3G148600.t1"; gene_id "Ledus.S3G148600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4330.t1 is derived from g1766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16381368	16383860	.	+	.	Ledus.S1G175100
Ledus.S1	AUGUSTUS	transcript	16381368	16383860	.	+	.	transcript_id "Ledus.S1G175100.t1"; gene_id "Ledus.S1G175100"
Ledus.S1	AUGUSTUS	start_codon	16381368	16381370	.	+	0	transcript_id "Ledus.S1G175100.t1"; gene_id "Ledus.S1G175100"
Ledus.S1	AUGUSTUS	CDS	16381368	16381498	0.54	+	0	transcript_id "Ledus.S1G175100.t1"; gene_id "Ledus.S1G175100"
Ledus.S1	AUGUSTUS	exon	16381368	16381498	.	+	.	transcript_id "Ledus.S1G175100.t1"; gene_id "Ledus.S1G175100"
Ledus.S1	AUGUSTUS	intron	16381499	16381717	.	+	.	transcript_id "Ledus.S1G175100.t1"; gene_id "Ledus.S1G175100"
Ledus.S1	AUGUSTUS	CDS	16381718	16383860	0.88	+	1	transcript_id "Ledus.S1G175100.t1"; gene_id "Ledus.S1G175100"
Ledus.S1	AUGUSTUS	exon	16381718	16383860	.	+	.	transcript_id "Ledus.S1G175100.t1"; gene_id "Ledus.S1G175100"
Ledus.S1	AUGUSTUS	stop_codon	16383861	16383863	.	+	0	transcript_id "Ledus.S1G175100.t1"; gene_id "Ledus.S1G175100"
# This transcript jg8670.t2 is derived from g9700.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8671.t1 is derived from g9701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1299167	1299748	.	+	.	Ledus.S3G014800
Ledus.S3	AUGUSTUS	transcript	1299167	1299748	.	+	.	transcript_id "Ledus.S3G014800.t1"; gene_id "Ledus.S3G014800"
Ledus.S3	AUGUSTUS	start_codon	1299167	1299169	.	+	0	transcript_id "Ledus.S3G014800.t1"; gene_id "Ledus.S3G014800"
Ledus.S3	AUGUSTUS	CDS	1299167	1299748	0.96	+	0	transcript_id "Ledus.S3G014800.t1"; gene_id "Ledus.S3G014800"
Ledus.S3	AUGUSTUS	exon	1299167	1299748	.	+	.	transcript_id "Ledus.S3G014800.t1"; gene_id "Ledus.S3G014800"
Ledus.S3	AUGUSTUS	stop_codon	1299749	1299751	.	+	0	transcript_id "Ledus.S3G014800.t1"; gene_id "Ledus.S3G014800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2203.t1 is derived from g9066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15954307	15955863	.	+	.	Ledus.S2G208500
Ledus.S2	AUGUSTUS	transcript	15954307	15955863	.	+	.	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	start_codon	15954307	15954309	.	+	0	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	CDS	15954307	15954609	0.47	+	0	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	exon	15954307	15954609	.	+	.	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	intron	15954610	15954790	.	+	.	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	CDS	15954791	15955241	0.98	+	0	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	exon	15954791	15955241	.	+	.	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	intron	15955242	15955331	.	+	.	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	CDS	15955332	15955602	1	+	2	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	exon	15955332	15955602	.	+	.	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	intron	15955603	15955679	.	+	.	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	CDS	15955680	15955863	0.99	+	1	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	exon	15955680	15955863	.	+	.	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
Ledus.S2	AUGUSTUS	stop_codon	15955864	15955866	.	+	0	transcript_id "Ledus.S2G208500.t1"; gene_id "Ledus.S2G208500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg637.t1 is derived from g7498.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3831288	3831731	.	-	.	Ledus.S2G051900
Ledus.S2	AUGUSTUS	transcript	3831288	3831731	.	-	.	transcript_id "Ledus.S2G051900.t1"; gene_id "Ledus.S2G051900"
Ledus.S2	AUGUSTUS	stop_codon	3831285	3831287	.	-	0	transcript_id "Ledus.S2G051900.t1"; gene_id "Ledus.S2G051900"
Ledus.S2	AUGUSTUS	CDS	3831288	3831731	0.89	-	0	transcript_id "Ledus.S2G051900.t1"; gene_id "Ledus.S2G051900"
Ledus.S2	AUGUSTUS	exon	3831288	3831731	.	-	.	transcript_id "Ledus.S2G051900.t1"; gene_id "Ledus.S2G051900"
Ledus.S2	AUGUSTUS	start_codon	3831729	3831731	.	-	0	transcript_id "Ledus.S2G051900.t1"; gene_id "Ledus.S2G051900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1419.t1 is derived from g8280.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9966469	9967920	.	+	.	Ledus.S2G130100
Ledus.S2	AUGUSTUS	transcript	9966469	9967920	.	+	.	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	start_codon	9966469	9966471	.	+	0	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	CDS	9966469	9966484	0.96	+	0	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	exon	9966469	9966484	.	+	.	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	intron	9966485	9966800	.	+	.	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	CDS	9966801	9966892	0.83	+	2	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	exon	9966801	9966892	.	+	.	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	intron	9966893	9967077	.	+	.	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	CDS	9967078	9967168	0.97	+	0	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	exon	9967078	9967168	.	+	.	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	intron	9967169	9967254	.	+	.	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	CDS	9967255	9967368	1	+	2	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	exon	9967255	9967368	.	+	.	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	intron	9967369	9967445	.	+	.	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	CDS	9967446	9967550	1	+	2	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	exon	9967446	9967550	.	+	.	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	intron	9967551	9967624	.	+	.	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	CDS	9967625	9967920	1	+	2	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	exon	9967625	9967920	.	+	.	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
Ledus.S2	AUGUSTUS	stop_codon	9967921	9967923	.	+	0	transcript_id "Ledus.S2G130100.t1"; gene_id "Ledus.S2G130100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9426.t1 is derived from g10456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6673689	6678076	.	+	.	Ledus.S3G090300
Ledus.S3	AUGUSTUS	transcript	6673689	6678076	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	start_codon	6673689	6673691	.	+	0	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6673689	6673837	0.58	+	0	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6673689	6673837	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6673838	6674021	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6674022	6674309	0.79	+	1	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6674022	6674309	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6674310	6674428	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6674429	6674644	0.99	+	1	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6674429	6674644	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6674645	6674758	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6674759	6674917	0.99	+	1	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6674759	6674917	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6674918	6675014	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6675015	6675072	1	+	1	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6675015	6675072	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6675073	6675203	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6675204	6675521	1	+	0	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6675204	6675521	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6675522	6675602	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6675603	6675842	1	+	0	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6675603	6675842	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6675843	6675938	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6675939	6676037	0.99	+	0	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6675939	6676037	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6676038	6676142	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6676143	6676175	1	+	0	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6676143	6676175	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6676176	6676275	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6676276	6676461	0.78	+	0	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6676276	6676461	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6676462	6676573	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6676574	6676768	0.87	+	0	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6676574	6676768	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6676769	6676896	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6676897	6676972	0.93	+	0	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6676897	6676972	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6676973	6677089	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6677090	6677857	0.9	+	2	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6677090	6677857	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6677858	6677942	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6677943	6678076	1	+	2	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6677943	6678076	.	+	.	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	stop_codon	6678077	6678079	.	+	0	transcript_id "Ledus.S3G090300.t1"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	transcript	6673689	6678076	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	start_codon	6673689	6673691	.	+	0	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6673689	6673837	0.56	+	0	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6673689	6673837	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6673838	6674021	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6674022	6674309	0.82	+	1	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6674022	6674309	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6674310	6674378	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6674379	6674456	0.75	+	1	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6674379	6674456	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6674457	6674758	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6674759	6674917	0.95	+	1	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6674759	6674917	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6674918	6675014	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6675015	6675072	1	+	1	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6675015	6675072	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6675073	6675203	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6675204	6675521	1	+	0	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6675204	6675521	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6675522	6675602	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6675603	6675842	1	+	0	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6675603	6675842	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6675843	6675938	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6675939	6676037	1	+	0	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6675939	6676037	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6676038	6676142	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6676143	6676175	1	+	0	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6676143	6676175	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6676176	6676275	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6676276	6676461	0.8	+	0	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6676276	6676461	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6676462	6676573	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6676574	6676768	0.89	+	0	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6676574	6676768	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6676769	6676896	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6676897	6676972	0.96	+	0	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6676897	6676972	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6676973	6677089	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6677090	6677857	0.94	+	2	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6677090	6677857	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	intron	6677858	6677942	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	CDS	6677943	6678076	1	+	2	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	exon	6677943	6678076	.	+	.	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
Ledus.S3	AUGUSTUS	stop_codon	6678077	6678079	.	+	0	transcript_id "Ledus.S3G090300.t2"; gene_id "Ledus.S3G090300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5779.t1 is derived from g3221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26708637	26710991	.	+	.	Ledus.S1G320000
Ledus.S1	AUGUSTUS	transcript	26708637	26710991	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	start_codon	26708637	26708639	.	+	0	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	CDS	26708637	26708694	1	+	0	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	exon	26708637	26708694	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	intron	26708695	26708768	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	CDS	26708769	26709037	1	+	2	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	exon	26708769	26709037	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	intron	26709038	26709148	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	CDS	26709149	26709288	1	+	0	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	exon	26709149	26709288	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	intron	26709289	26709419	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	CDS	26709420	26709675	0.99	+	1	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	exon	26709420	26709675	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	intron	26709676	26709790	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	CDS	26709791	26709923	1	+	0	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	exon	26709791	26709923	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	intron	26709924	26710054	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	CDS	26710055	26710162	0.68	+	2	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	exon	26710055	26710162	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	intron	26710163	26710274	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	CDS	26710275	26710594	0.68	+	2	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	exon	26710275	26710594	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	intron	26710595	26710796	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	CDS	26710797	26710991	0.76	+	0	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	exon	26710797	26710991	.	+	.	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
Ledus.S1	AUGUSTUS	stop_codon	26710992	26710994	.	+	0	transcript_id "Ledus.S1G320000.t1"; gene_id "Ledus.S1G320000"
# This transcript jg473.t2 is derived from g7333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg474.t1 is derived from g7335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2767772	2771716	.	-	.	Ledus.S2G035600
Ledus.S2	AUGUSTUS	transcript	2767772	2771716	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	stop_codon	2767769	2767771	.	-	0	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2767772	2767867	1	-	0	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2767772	2767867	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2767868	2767990	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2767991	2768093	1	-	1	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2767991	2768093	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2768094	2768185	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2768186	2768257	0.98	-	1	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2768186	2768257	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2768258	2768377	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2768378	2768439	1	-	0	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2768378	2768439	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2768440	2768532	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2768533	2768658	1	-	0	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2768533	2768658	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2768659	2768780	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2768781	2768838	1	-	1	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2768781	2768838	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2768839	2768990	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2768991	2769089	1	-	1	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2768991	2769089	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2769090	2769268	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2769269	2769361	1	-	1	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2769269	2769361	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2769362	2769501	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2769502	2769689	0.99	-	0	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2769502	2769689	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2769690	2769803	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2769804	2769953	0.99	-	0	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2769804	2769953	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2769954	2770047	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2770048	2770122	1	-	0	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2770048	2770122	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2770123	2770250	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2770251	2770839	1	-	1	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2770251	2770839	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2770840	2771086	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2771087	2771430	0.38	-	0	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2771087	2771430	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	intron	2771431	2771635	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	CDS	2771636	2771716	0.68	-	0	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	exon	2771636	2771716	.	-	.	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
Ledus.S2	AUGUSTUS	start_codon	2771714	2771716	.	-	0	transcript_id "Ledus.S2G035600.t1"; gene_id "Ledus.S2G035600"
# This transcript jg8191.t2 is derived from g12862.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8192.t1 is derived from g12863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9766840	9768625	.	+	.	Ledus.S5G097000
Ledus.S5	AUGUSTUS	transcript	9766840	9768625	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	start_codon	9766840	9766842	.	+	0	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	CDS	9766840	9766932	0.91	+	0	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	exon	9766840	9766932	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	intron	9766933	9767018	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	CDS	9767019	9767232	0.95	+	0	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	exon	9767019	9767232	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	intron	9767233	9767362	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	CDS	9767363	9767498	0.92	+	2	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	exon	9767363	9767498	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	intron	9767499	9767667	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	CDS	9767668	9767732	0.9	+	1	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	exon	9767668	9767732	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	intron	9767733	9767869	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	CDS	9767870	9768004	0.51	+	2	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	exon	9767870	9768004	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	intron	9768005	9768125	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	CDS	9768126	9768222	0.47	+	2	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	exon	9768126	9768222	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	intron	9768223	9768348	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	CDS	9768349	9768625	0.75	+	1	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	exon	9768349	9768625	.	+	.	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
Ledus.S5	AUGUSTUS	stop_codon	9768626	9768628	.	+	0	transcript_id "Ledus.S5G097000.t1"; gene_id "Ledus.S5G097000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8230.t1 is derived from g12901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10062825	10064282	.	-	.	Ledus.S5G100800
Ledus.S5	AUGUSTUS	transcript	10062825	10064282	.	-	.	transcript_id "Ledus.S5G100800.t1"; gene_id "Ledus.S5G100800"
Ledus.S5	AUGUSTUS	stop_codon	10062822	10062824	.	-	0	transcript_id "Ledus.S5G100800.t1"; gene_id "Ledus.S5G100800"
Ledus.S5	AUGUSTUS	CDS	10062825	10064282	1	-	0	transcript_id "Ledus.S5G100800.t1"; gene_id "Ledus.S5G100800"
Ledus.S5	AUGUSTUS	exon	10062825	10064282	.	-	.	transcript_id "Ledus.S5G100800.t1"; gene_id "Ledus.S5G100800"
Ledus.S5	AUGUSTUS	start_codon	10064280	10064282	.	-	0	transcript_id "Ledus.S5G100800.t1"; gene_id "Ledus.S5G100800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6485.t1 is derived from g3928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31583955	31585423	.	-	.	Ledus.S1G390600
Ledus.S1	AUGUSTUS	transcript	31583955	31585423	.	-	.	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	stop_codon	31583952	31583954	.	-	0	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	CDS	31583955	31584190	0.56	-	2	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	exon	31583955	31584190	.	-	.	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	intron	31584191	31584274	.	-	.	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	CDS	31584275	31584383	0.38	-	0	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	exon	31584275	31584383	.	-	.	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	intron	31584384	31584538	.	-	.	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	CDS	31584539	31584752	0.37	-	1	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	exon	31584539	31584752	.	-	.	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	intron	31584753	31584861	.	-	.	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	CDS	31584862	31585042	0.84	-	2	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	exon	31584862	31585042	.	-	.	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	intron	31585043	31585122	.	-	.	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	CDS	31585123	31585423	0.75	-	0	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	exon	31585123	31585423	.	-	.	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
Ledus.S1	AUGUSTUS	start_codon	31585421	31585423	.	-	0	transcript_id "Ledus.S1G390600.t1"; gene_id "Ledus.S1G390600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8511.t1 is derived from g13183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12400957	12401503	.	+	.	Ledus.S5G128900
Ledus.S5	AUGUSTUS	transcript	12400957	12401503	.	+	.	transcript_id "Ledus.S5G128900.t1"; gene_id "Ledus.S5G128900"
Ledus.S5	AUGUSTUS	start_codon	12400957	12400959	.	+	0	transcript_id "Ledus.S5G128900.t1"; gene_id "Ledus.S5G128900"
Ledus.S5	AUGUSTUS	CDS	12400957	12401055	0.29	+	0	transcript_id "Ledus.S5G128900.t1"; gene_id "Ledus.S5G128900"
Ledus.S5	AUGUSTUS	exon	12400957	12401055	.	+	.	transcript_id "Ledus.S5G128900.t1"; gene_id "Ledus.S5G128900"
Ledus.S5	AUGUSTUS	intron	12401056	12401176	.	+	.	transcript_id "Ledus.S5G128900.t1"; gene_id "Ledus.S5G128900"
Ledus.S5	AUGUSTUS	CDS	12401177	12401503	0.42	+	0	transcript_id "Ledus.S5G128900.t1"; gene_id "Ledus.S5G128900"
Ledus.S5	AUGUSTUS	exon	12401177	12401503	.	+	.	transcript_id "Ledus.S5G128900.t1"; gene_id "Ledus.S5G128900"
Ledus.S5	AUGUSTUS	stop_codon	12401504	12401506	.	+	0	transcript_id "Ledus.S5G128900.t1"; gene_id "Ledus.S5G128900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1907.t1 is derived from g8770.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13335155	13336069	.	-	.	Ledus.S2G178900
Ledus.S2	AUGUSTUS	transcript	13335289	13336069	.	-	.	transcript_id "Ledus.S2G178900.t1"; gene_id "Ledus.S2G178900"
Ledus.S2	AUGUSTUS	stop_codon	13335286	13335288	.	-	0	transcript_id "Ledus.S2G178900.t1"; gene_id "Ledus.S2G178900"
Ledus.S2	AUGUSTUS	CDS	13335289	13335339	0.98	-	0	transcript_id "Ledus.S2G178900.t1"; gene_id "Ledus.S2G178900"
Ledus.S2	AUGUSTUS	exon	13335289	13335339	.	-	.	transcript_id "Ledus.S2G178900.t1"; gene_id "Ledus.S2G178900"
Ledus.S2	AUGUSTUS	intron	13335340	13335412	.	-	.	transcript_id "Ledus.S2G178900.t1"; gene_id "Ledus.S2G178900"
Ledus.S2	AUGUSTUS	CDS	13335413	13336069	0.93	-	0	transcript_id "Ledus.S2G178900.t1"; gene_id "Ledus.S2G178900"
Ledus.S2	AUGUSTUS	exon	13335413	13336069	.	-	.	transcript_id "Ledus.S2G178900.t1"; gene_id "Ledus.S2G178900"
Ledus.S2	AUGUSTUS	start_codon	13336067	13336069	.	-	0	transcript_id "Ledus.S2G178900.t1"; gene_id "Ledus.S2G178900"
Ledus.S2	AUGUSTUS	transcript	13335155	13336069	.	-	.	transcript_id "Ledus.S2G178900.t2"; gene_id "Ledus.S2G178900"
Ledus.S2	AUGUSTUS	stop_codon	13335152	13335154	.	-	0	transcript_id "Ledus.S2G178900.t2"; gene_id "Ledus.S2G178900"
Ledus.S2	AUGUSTUS	CDS	13335155	13336069	0.95	-	0	transcript_id "Ledus.S2G178900.t2"; gene_id "Ledus.S2G178900"
Ledus.S2	AUGUSTUS	exon	13335155	13336069	.	-	.	transcript_id "Ledus.S2G178900.t2"; gene_id "Ledus.S2G178900"
Ledus.S2	AUGUSTUS	start_codon	13336067	13336069	.	-	0	transcript_id "Ledus.S2G178900.t2"; gene_id "Ledus.S2G178900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3846.t1 is derived from g1282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13157221	13158291	.	+	.	Ledus.S1G126700
Ledus.S1	AUGUSTUS	transcript	13157221	13158291	.	+	.	transcript_id "Ledus.S1G126700.t1"; gene_id "Ledus.S1G126700"
Ledus.S1	AUGUSTUS	start_codon	13157221	13157223	.	+	0	transcript_id "Ledus.S1G126700.t1"; gene_id "Ledus.S1G126700"
Ledus.S1	AUGUSTUS	CDS	13157221	13157403	0.92	+	0	transcript_id "Ledus.S1G126700.t1"; gene_id "Ledus.S1G126700"
Ledus.S1	AUGUSTUS	exon	13157221	13157403	.	+	.	transcript_id "Ledus.S1G126700.t1"; gene_id "Ledus.S1G126700"
Ledus.S1	AUGUSTUS	intron	13157404	13157485	.	+	.	transcript_id "Ledus.S1G126700.t1"; gene_id "Ledus.S1G126700"
Ledus.S1	AUGUSTUS	CDS	13157486	13157665	1	+	0	transcript_id "Ledus.S1G126700.t1"; gene_id "Ledus.S1G126700"
Ledus.S1	AUGUSTUS	exon	13157486	13157665	.	+	.	transcript_id "Ledus.S1G126700.t1"; gene_id "Ledus.S1G126700"
Ledus.S1	AUGUSTUS	intron	13157666	13157766	.	+	.	transcript_id "Ledus.S1G126700.t1"; gene_id "Ledus.S1G126700"
Ledus.S1	AUGUSTUS	CDS	13157767	13158291	0.94	+	0	transcript_id "Ledus.S1G126700.t1"; gene_id "Ledus.S1G126700"
Ledus.S1	AUGUSTUS	exon	13157767	13158291	.	+	.	transcript_id "Ledus.S1G126700.t1"; gene_id "Ledus.S1G126700"
Ledus.S1	AUGUSTUS	stop_codon	13158292	13158294	.	+	0	transcript_id "Ledus.S1G126700.t1"; gene_id "Ledus.S1G126700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12424.t1 is derived from g6045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11965724	11966557	.	+	.	Ledus.S4G158000
Ledus.S4	AUGUSTUS	transcript	11965724	11966557	.	+	.	transcript_id "Ledus.S4G158000.t1"; gene_id "Ledus.S4G158000"
Ledus.S4	AUGUSTUS	start_codon	11965724	11965726	.	+	0	transcript_id "Ledus.S4G158000.t1"; gene_id "Ledus.S4G158000"
Ledus.S4	AUGUSTUS	CDS	11965724	11966557	0.9	+	0	transcript_id "Ledus.S4G158000.t1"; gene_id "Ledus.S4G158000"
Ledus.S4	AUGUSTUS	exon	11965724	11966557	.	+	.	transcript_id "Ledus.S4G158000.t1"; gene_id "Ledus.S4G158000"
Ledus.S4	AUGUSTUS	stop_codon	11966558	11966560	.	+	0	transcript_id "Ledus.S4G158000.t1"; gene_id "Ledus.S4G158000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7625.t1 is derived from g12296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4423799	4424225	.	-	.	Ledus.S5G040300
Ledus.S5	AUGUSTUS	transcript	4423799	4424225	.	-	.	transcript_id "Ledus.S5G040300.t1"; gene_id "Ledus.S5G040300"
Ledus.S5	AUGUSTUS	stop_codon	4423796	4423798	.	-	0	transcript_id "Ledus.S5G040300.t1"; gene_id "Ledus.S5G040300"
Ledus.S5	AUGUSTUS	CDS	4423799	4424010	0.92	-	2	transcript_id "Ledus.S5G040300.t1"; gene_id "Ledus.S5G040300"
Ledus.S5	AUGUSTUS	exon	4423799	4424010	.	-	.	transcript_id "Ledus.S5G040300.t1"; gene_id "Ledus.S5G040300"
Ledus.S5	AUGUSTUS	intron	4424011	4424188	.	-	.	transcript_id "Ledus.S5G040300.t1"; gene_id "Ledus.S5G040300"
Ledus.S5	AUGUSTUS	CDS	4424189	4424225	0.8	-	0	transcript_id "Ledus.S5G040300.t1"; gene_id "Ledus.S5G040300"
Ledus.S5	AUGUSTUS	exon	4424189	4424225	.	-	.	transcript_id "Ledus.S5G040300.t1"; gene_id "Ledus.S5G040300"
Ledus.S5	AUGUSTUS	start_codon	4424223	4424225	.	-	0	transcript_id "Ledus.S5G040300.t1"; gene_id "Ledus.S5G040300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7802.t1 is derived from g12473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6860159	6861052	.	-	.	Ledus.S5G058000
Ledus.S5	AUGUSTUS	transcript	6860159	6861052	.	-	.	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	stop_codon	6860156	6860158	.	-	0	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	CDS	6860159	6860266	1	-	0	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	exon	6860159	6860266	.	-	.	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	intron	6860267	6860344	.	-	.	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	CDS	6860345	6860435	1	-	1	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	exon	6860345	6860435	.	-	.	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	intron	6860436	6860517	.	-	.	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	CDS	6860518	6860628	1	-	1	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	exon	6860518	6860628	.	-	.	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	intron	6860629	6860713	.	-	.	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	CDS	6860714	6860838	0.75	-	0	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	exon	6860714	6860838	.	-	.	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	intron	6860839	6860977	.	-	.	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	CDS	6860978	6861052	0.74	-	0	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	exon	6860978	6861052	.	-	.	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
Ledus.S5	AUGUSTUS	start_codon	6861050	6861052	.	-	0	transcript_id "Ledus.S5G058000.t1"; gene_id "Ledus.S5G058000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9399.t1 is derived from g10429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6534629	6539022	.	-	.	Ledus.S3G087600
Ledus.S3	AUGUSTUS	transcript	6534629	6539022	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	stop_codon	6534626	6534628	.	-	0	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	CDS	6534629	6534727	0.97	-	0	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	exon	6534629	6534727	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	intron	6534728	6534804	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	CDS	6534805	6534951	1	-	0	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	exon	6534805	6534951	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	intron	6534952	6535044	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	CDS	6535045	6535156	1	-	1	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	exon	6535045	6535156	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	intron	6535157	6535256	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	CDS	6535257	6535438	1	-	0	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	exon	6535257	6535438	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	intron	6535439	6535539	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	CDS	6535540	6535671	1	-	0	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	exon	6535540	6535671	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	intron	6535672	6535822	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	CDS	6535823	6535914	0.65	-	2	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	exon	6535823	6535914	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	intron	6535915	6536103	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	CDS	6536104	6537073	0.7	-	0	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	exon	6536104	6537073	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	intron	6537074	6537156	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	CDS	6537157	6538392	1	-	0	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	exon	6537157	6538392	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	intron	6538393	6538474	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	CDS	6538475	6538560	1	-	2	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	exon	6538475	6538560	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	intron	6538561	6538660	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	CDS	6538661	6538686	0.46	-	1	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	exon	6538661	6538686	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	intron	6538687	6538861	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	CDS	6538862	6539022	0.6	-	0	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	exon	6538862	6539022	.	-	.	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
Ledus.S3	AUGUSTUS	start_codon	6539020	6539022	.	-	0	transcript_id "Ledus.S3G087600.t1"; gene_id "Ledus.S3G087600"
# This transcript jg3838.t2 is derived from g1274.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3838.t3 is derived from g1274.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3838.t4 is derived from g1274.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3839.t1 is derived from g1275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12973149	12973517	.	+	.	Ledus.S1G126000
Ledus.S1	AUGUSTUS	transcript	12973149	12973517	.	+	.	transcript_id "Ledus.S1G126000.t1"; gene_id "Ledus.S1G126000"
Ledus.S1	AUGUSTUS	start_codon	12973149	12973151	.	+	0	transcript_id "Ledus.S1G126000.t1"; gene_id "Ledus.S1G126000"
Ledus.S1	AUGUSTUS	CDS	12973149	12973180	1	+	0	transcript_id "Ledus.S1G126000.t1"; gene_id "Ledus.S1G126000"
Ledus.S1	AUGUSTUS	exon	12973149	12973180	.	+	.	transcript_id "Ledus.S1G126000.t1"; gene_id "Ledus.S1G126000"
Ledus.S1	AUGUSTUS	intron	12973181	12973254	.	+	.	transcript_id "Ledus.S1G126000.t1"; gene_id "Ledus.S1G126000"
Ledus.S1	AUGUSTUS	CDS	12973255	12973333	1	+	1	transcript_id "Ledus.S1G126000.t1"; gene_id "Ledus.S1G126000"
Ledus.S1	AUGUSTUS	exon	12973255	12973333	.	+	.	transcript_id "Ledus.S1G126000.t1"; gene_id "Ledus.S1G126000"
Ledus.S1	AUGUSTUS	intron	12973334	12973421	.	+	.	transcript_id "Ledus.S1G126000.t1"; gene_id "Ledus.S1G126000"
Ledus.S1	AUGUSTUS	CDS	12973422	12973517	1	+	0	transcript_id "Ledus.S1G126000.t1"; gene_id "Ledus.S1G126000"
Ledus.S1	AUGUSTUS	exon	12973422	12973517	.	+	.	transcript_id "Ledus.S1G126000.t1"; gene_id "Ledus.S1G126000"
Ledus.S1	AUGUSTUS	stop_codon	12973518	12973520	.	+	0	transcript_id "Ledus.S1G126000.t1"; gene_id "Ledus.S1G126000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5573.t1 is derived from g3012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25189769	25191520	.	+	.	Ledus.S1G299400
Ledus.S1	AUGUSTUS	transcript	25189769	25191520	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	start_codon	25189769	25189771	.	+	0	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	CDS	25189769	25189918	0.67	+	0	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	exon	25189769	25189918	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	intron	25189919	25190056	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	CDS	25190057	25190104	0.28	+	0	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	exon	25190057	25190104	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	intron	25190105	25190262	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	CDS	25190263	25190416	0.58	+	0	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	exon	25190263	25190416	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	intron	25190417	25190653	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	CDS	25190654	25190868	0.41	+	2	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	exon	25190654	25190868	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	intron	25190869	25190978	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	CDS	25190979	25191092	0.94	+	0	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	exon	25190979	25191092	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	intron	25191093	25191203	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	CDS	25191204	25191432	1	+	0	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	exon	25191204	25191432	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	intron	25191433	25191518	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	CDS	25191519	25191520	1	+	2	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	exon	25191519	25191520	.	+	.	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
Ledus.S1	AUGUSTUS	stop_codon	25191521	25191523	.	+	0	transcript_id "Ledus.S1G299400.t1"; gene_id "Ledus.S1G299400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg527.t1 is derived from g7388.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3051639	3055323	.	-	.	Ledus.S2G040900
Ledus.S2	AUGUSTUS	transcript	3051639	3055323	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	stop_codon	3051636	3051638	.	-	0	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	CDS	3051639	3052586	0.83	-	0	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	exon	3051639	3052586	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	intron	3052587	3052720	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	CDS	3052721	3052795	1	-	0	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	exon	3052721	3052795	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	intron	3052796	3052995	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	CDS	3052996	3053112	1	-	0	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	exon	3052996	3053112	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	intron	3053113	3053193	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	CDS	3053194	3053286	1	-	0	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	exon	3053194	3053286	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	intron	3053287	3053549	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	CDS	3053550	3053565	0.98	-	1	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	exon	3053550	3053565	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	intron	3053566	3053841	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	CDS	3053842	3053894	0.74	-	0	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	exon	3053842	3053894	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	intron	3053895	3054018	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	CDS	3054019	3054177	0.98	-	0	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	exon	3054019	3054177	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	intron	3054178	3054328	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	CDS	3054329	3054448	1	-	0	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	exon	3054329	3054448	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	intron	3054449	3054583	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	CDS	3054584	3054748	1	-	0	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	exon	3054584	3054748	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	intron	3054749	3054828	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	CDS	3054829	3055323	0.53	-	0	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	exon	3054829	3055323	.	-	.	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
Ledus.S2	AUGUSTUS	start_codon	3055321	3055323	.	-	0	transcript_id "Ledus.S2G040900.t1"; gene_id "Ledus.S2G040900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6902.t1 is derived from g4346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35083042	35085960	.	+	.	Ledus.S1G432300
Ledus.S1	AUGUSTUS	transcript	35083042	35085960	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	start_codon	35083042	35083044	.	+	0	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	CDS	35083042	35083074	1	+	0	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	exon	35083042	35083074	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	intron	35083075	35083171	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	CDS	35083172	35083255	0.96	+	0	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	exon	35083172	35083255	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	intron	35083256	35083360	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	CDS	35083361	35083552	0.96	+	0	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	exon	35083361	35083552	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	intron	35083553	35083713	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	CDS	35083714	35083921	1	+	0	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	exon	35083714	35083921	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	intron	35083922	35084196	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	CDS	35084197	35084331	0.46	+	2	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	exon	35084197	35084331	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	intron	35084332	35084521	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	CDS	35084522	35084646	0.62	+	2	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	exon	35084522	35084646	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	intron	35084647	35084758	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	CDS	35084759	35084953	1	+	0	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	exon	35084759	35084953	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	intron	35084954	35085040	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	CDS	35085041	35085148	1	+	0	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	exon	35085041	35085148	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	intron	35085149	35085237	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	CDS	35085238	35085415	1	+	0	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	exon	35085238	35085415	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	intron	35085416	35085493	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	CDS	35085494	35085576	1	+	2	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	exon	35085494	35085576	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	intron	35085577	35085665	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	CDS	35085666	35085735	0.56	+	0	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	exon	35085666	35085735	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	intron	35085736	35085838	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	CDS	35085839	35085960	0.64	+	2	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	exon	35085839	35085960	.	+	.	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
Ledus.S1	AUGUSTUS	stop_codon	35085961	35085963	.	+	0	transcript_id "Ledus.S1G432300.t1"; gene_id "Ledus.S1G432300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10494.t1 is derived from g11524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15605890	15610374	.	+	.	Ledus.S3G197100
Ledus.S3	AUGUSTUS	transcript	15605890	15610374	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	start_codon	15605890	15605892	.	+	0	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	CDS	15605890	15605895	1	+	0	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	exon	15605890	15605895	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	intron	15605896	15606044	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	CDS	15606045	15606336	1	+	0	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	exon	15606045	15606336	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	intron	15606337	15607001	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	CDS	15607002	15607144	1	+	2	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	exon	15607002	15607144	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	intron	15607145	15607297	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	CDS	15607298	15607392	1	+	0	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	exon	15607298	15607392	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	intron	15607393	15607559	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	CDS	15607560	15608191	1	+	1	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	exon	15607560	15608191	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	intron	15608192	15608271	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	CDS	15608272	15609051	1	+	2	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	exon	15608272	15609051	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	intron	15609052	15609165	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	CDS	15609166	15609326	1	+	2	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	exon	15609166	15609326	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	intron	15609327	15609423	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	CDS	15609424	15609500	1	+	0	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	exon	15609424	15609500	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	intron	15609501	15609581	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	CDS	15609582	15609729	1	+	1	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	exon	15609582	15609729	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	intron	15609730	15609805	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	CDS	15609806	15609955	1	+	0	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	exon	15609806	15609955	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	intron	15609956	15610044	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	CDS	15610045	15610374	1	+	0	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	exon	15610045	15610374	.	+	.	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
Ledus.S3	AUGUSTUS	stop_codon	15610375	15610377	.	+	0	transcript_id "Ledus.S3G197100.t1"; gene_id "Ledus.S3G197100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7597.t1 is derived from g12268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4287430	4290712	.	+	.	Ledus.S5G037500
Ledus.S5	AUGUSTUS	transcript	4287430	4290712	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	start_codon	4287430	4287432	.	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4287430	4287528	0.91	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4287430	4287528	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4287529	4287614	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4287615	4288225	0.97	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4287615	4288225	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4288226	4288320	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4288321	4288501	0.99	+	1	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4288321	4288501	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4288502	4288611	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4288612	4288671	0.99	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4288612	4288671	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4288672	4288780	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4288781	4288944	0.9	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4288781	4288944	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4288945	4289048	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4289049	4289112	0.6	+	1	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4289049	4289112	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4289113	4289214	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4289215	4289283	0.69	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4289215	4289283	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4289284	4289394	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4289395	4289490	1	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4289395	4289490	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4289491	4289582	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4289583	4289627	1	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4289583	4289627	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4289628	4289744	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4289745	4289815	1	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4289745	4289815	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4289816	4289895	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4289896	4289962	1	+	1	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4289896	4289962	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4289963	4290054	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4290055	4290105	1	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4290055	4290105	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4290106	4290221	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4290222	4290332	1	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4290222	4290332	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4290333	4290431	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4290432	4290479	1	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4290432	4290479	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	intron	4290480	4290577	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	CDS	4290578	4290712	1	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	exon	4290578	4290712	.	+	.	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
Ledus.S5	AUGUSTUS	stop_codon	4290713	4290715	.	+	0	transcript_id "Ledus.S5G037500.t1"; gene_id "Ledus.S5G037500"
# This transcript jg4074.t2 is derived from g1510.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4075.t1 is derived from g1511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14484035	14486669	.	-	.	Ledus.S1G149600
Ledus.S1	AUGUSTUS	transcript	14484035	14486669	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	stop_codon	14484032	14484034	.	-	0	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	CDS	14484035	14484195	1	-	2	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	exon	14484035	14484195	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	intron	14484196	14484281	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	CDS	14484282	14484449	1	-	2	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	exon	14484282	14484449	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	intron	14484450	14484591	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	CDS	14484592	14484640	1	-	0	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	exon	14484592	14484640	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	intron	14484641	14484739	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	CDS	14484740	14484777	1	-	2	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	exon	14484740	14484777	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	intron	14484778	14484959	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	CDS	14484960	14485102	1	-	1	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	exon	14484960	14485102	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	intron	14485103	14485185	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	CDS	14485186	14485248	1	-	1	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	exon	14485186	14485248	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	intron	14485249	14485335	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	CDS	14485336	14485666	0.99	-	2	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	exon	14485336	14485666	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	intron	14485667	14486472	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	CDS	14486473	14486559	1	-	2	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	exon	14486473	14486559	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	intron	14486560	14486650	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	CDS	14486651	14486669	0.79	-	0	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	exon	14486651	14486669	.	-	.	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
Ledus.S1	AUGUSTUS	start_codon	14486667	14486669	.	-	0	transcript_id "Ledus.S1G149600.t1"; gene_id "Ledus.S1G149600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8270.t1 is derived from g12941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10335046	10336080	.	+	.	Ledus.S5G104800
Ledus.S5	AUGUSTUS	transcript	10335046	10336080	.	+	.	transcript_id "Ledus.S5G104800.t1"; gene_id "Ledus.S5G104800"
Ledus.S5	AUGUSTUS	start_codon	10335046	10335048	.	+	0	transcript_id "Ledus.S5G104800.t1"; gene_id "Ledus.S5G104800"
Ledus.S5	AUGUSTUS	CDS	10335046	10336080	0.79	+	0	transcript_id "Ledus.S5G104800.t1"; gene_id "Ledus.S5G104800"
Ledus.S5	AUGUSTUS	exon	10335046	10336080	.	+	.	transcript_id "Ledus.S5G104800.t1"; gene_id "Ledus.S5G104800"
Ledus.S5	AUGUSTUS	stop_codon	10336081	10336083	.	+	0	transcript_id "Ledus.S5G104800.t1"; gene_id "Ledus.S5G104800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13150.t1 is derived from g6960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7401620	7402684	.	+	.	Ledus.S6G021200
Ledus.S6	AUGUSTUS	transcript	7401620	7402684	.	+	.	transcript_id "Ledus.S6G021200.t1"; gene_id "Ledus.S6G021200"
Ledus.S6	AUGUSTUS	start_codon	7401620	7401622	.	+	0	transcript_id "Ledus.S6G021200.t1"; gene_id "Ledus.S6G021200"
Ledus.S6	AUGUSTUS	CDS	7401620	7402684	0.63	+	0	transcript_id "Ledus.S6G021200.t1"; gene_id "Ledus.S6G021200"
Ledus.S6	AUGUSTUS	exon	7401620	7402684	.	+	.	transcript_id "Ledus.S6G021200.t1"; gene_id "Ledus.S6G021200"
Ledus.S6	AUGUSTUS	stop_codon	7402685	7402687	.	+	0	transcript_id "Ledus.S6G021200.t1"; gene_id "Ledus.S6G021200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3543.t1 is derived from g979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9364545	9365187	.	-	.	Ledus.S1G096400
Ledus.S1	AUGUSTUS	transcript	9364545	9365187	.	-	.	transcript_id "Ledus.S1G096400.t1"; gene_id "Ledus.S1G096400"
Ledus.S1	AUGUSTUS	stop_codon	9364542	9364544	.	-	0	transcript_id "Ledus.S1G096400.t1"; gene_id "Ledus.S1G096400"
Ledus.S1	AUGUSTUS	CDS	9364545	9364571	0.01	-	0	transcript_id "Ledus.S1G096400.t1"; gene_id "Ledus.S1G096400"
Ledus.S1	AUGUSTUS	exon	9364545	9364571	.	-	.	transcript_id "Ledus.S1G096400.t1"; gene_id "Ledus.S1G096400"
Ledus.S1	AUGUSTUS	intron	9364572	9364659	.	-	.	transcript_id "Ledus.S1G096400.t1"; gene_id "Ledus.S1G096400"
Ledus.S1	AUGUSTUS	CDS	9364660	9364691	0.01	-	2	transcript_id "Ledus.S1G096400.t1"; gene_id "Ledus.S1G096400"
Ledus.S1	AUGUSTUS	exon	9364660	9364691	.	-	.	transcript_id "Ledus.S1G096400.t1"; gene_id "Ledus.S1G096400"
Ledus.S1	AUGUSTUS	intron	9364692	9365066	.	-	.	transcript_id "Ledus.S1G096400.t1"; gene_id "Ledus.S1G096400"
Ledus.S1	AUGUSTUS	CDS	9365067	9365187	0.25	-	0	transcript_id "Ledus.S1G096400.t1"; gene_id "Ledus.S1G096400"
Ledus.S1	AUGUSTUS	exon	9365067	9365187	.	-	.	transcript_id "Ledus.S1G096400.t1"; gene_id "Ledus.S1G096400"
Ledus.S1	AUGUSTUS	start_codon	9365185	9365187	.	-	0	transcript_id "Ledus.S1G096400.t1"; gene_id "Ledus.S1G096400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6513.t1 is derived from g3956.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31812362	31816820	.	-	.	Ledus.S1G393400
Ledus.S1	AUGUSTUS	transcript	31812362	31816820	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	stop_codon	31812359	31812361	.	-	0	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31812362	31812691	0.75	-	0	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31812362	31812691	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31812692	31813135	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31813136	31813452	1	-	2	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31813136	31813452	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31813453	31813551	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31813552	31813620	1	-	2	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31813552	31813620	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31813621	31813701	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31813702	31813828	0.97	-	0	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31813702	31813828	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31813829	31813934	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31813935	31814167	0.97	-	2	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31813935	31814167	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31814168	31814265	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31814266	31814537	1	-	1	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31814266	31814537	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31814538	31814616	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31814617	31814685	1	-	1	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31814617	31814685	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31814686	31814781	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31814782	31814853	1	-	1	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31814782	31814853	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31814854	31815010	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31815011	31815082	1	-	1	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31815011	31815082	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31815083	31815184	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31815185	31815299	1	-	2	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31815185	31815299	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31815300	31815401	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31815402	31815637	0.99	-	1	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31815402	31815637	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31815638	31815738	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31815739	31815999	1	-	1	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31815739	31815999	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31816000	31816076	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31816077	31816641	1	-	2	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31816077	31816641	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	intron	31816642	31816732	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	CDS	31816733	31816820	0.93	-	0	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	exon	31816733	31816820	.	-	.	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
Ledus.S1	AUGUSTUS	start_codon	31816818	31816820	.	-	0	transcript_id "Ledus.S1G393400.t1"; gene_id "Ledus.S1G393400"
# This transcript jg4962.t2 is derived from g2400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4963.t1 is derived from g2401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20899400	20901849	.	-	.	Ledus.S1G238400
Ledus.S1	AUGUSTUS	transcript	20899400	20901849	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	stop_codon	20899397	20899399	.	-	0	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	CDS	20899400	20899546	0.94	-	0	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	exon	20899400	20899546	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	intron	20899547	20899634	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	CDS	20899635	20899748	1	-	0	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	exon	20899635	20899748	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	intron	20899749	20899854	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	CDS	20899855	20900025	0.48	-	0	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	exon	20899855	20900025	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	intron	20900026	20900129	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	CDS	20900130	20900213	0.95	-	0	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	exon	20900130	20900213	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	intron	20900214	20900298	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	CDS	20900299	20900412	1	-	0	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	exon	20900299	20900412	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	intron	20900413	20900540	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	CDS	20900541	20900789	1	-	0	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	exon	20900541	20900789	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	intron	20900790	20900947	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	CDS	20900948	20901051	1	-	2	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	exon	20900948	20901051	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	intron	20901052	20901168	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	CDS	20901169	20901262	0.99	-	0	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	exon	20901169	20901262	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	intron	20901263	20901344	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	CDS	20901345	20901591	1	-	1	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	exon	20901345	20901591	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	intron	20901592	20901676	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	CDS	20901677	20901849	1	-	0	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	exon	20901677	20901849	.	-	.	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
Ledus.S1	AUGUSTUS	start_codon	20901847	20901849	.	-	0	transcript_id "Ledus.S1G238400.t1"; gene_id "Ledus.S1G238400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5006.t1 is derived from g2444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21106915	21108949	.	-	.	Ledus.S1G242700
Ledus.S1	AUGUSTUS	transcript	21106915	21108949	.	-	.	transcript_id "Ledus.S1G242700.t1"; gene_id "Ledus.S1G242700"
Ledus.S1	AUGUSTUS	stop_codon	21106912	21106914	.	-	0	transcript_id "Ledus.S1G242700.t1"; gene_id "Ledus.S1G242700"
Ledus.S1	AUGUSTUS	CDS	21106915	21107939	0.99	-	2	transcript_id "Ledus.S1G242700.t1"; gene_id "Ledus.S1G242700"
Ledus.S1	AUGUSTUS	exon	21106915	21107939	.	-	.	transcript_id "Ledus.S1G242700.t1"; gene_id "Ledus.S1G242700"
Ledus.S1	AUGUSTUS	intron	21107940	21108140	.	-	.	transcript_id "Ledus.S1G242700.t1"; gene_id "Ledus.S1G242700"
Ledus.S1	AUGUSTUS	CDS	21108141	21108352	1	-	1	transcript_id "Ledus.S1G242700.t1"; gene_id "Ledus.S1G242700"
Ledus.S1	AUGUSTUS	exon	21108141	21108352	.	-	.	transcript_id "Ledus.S1G242700.t1"; gene_id "Ledus.S1G242700"
Ledus.S1	AUGUSTUS	intron	21108353	21108437	.	-	.	transcript_id "Ledus.S1G242700.t1"; gene_id "Ledus.S1G242700"
Ledus.S1	AUGUSTUS	CDS	21108438	21108949	1	-	0	transcript_id "Ledus.S1G242700.t1"; gene_id "Ledus.S1G242700"
Ledus.S1	AUGUSTUS	exon	21108438	21108949	.	-	.	transcript_id "Ledus.S1G242700.t1"; gene_id "Ledus.S1G242700"
Ledus.S1	AUGUSTUS	start_codon	21108947	21108949	.	-	0	transcript_id "Ledus.S1G242700.t1"; gene_id "Ledus.S1G242700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7850.t1 is derived from g12521.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7481653	7482446	.	+	.	Ledus.S5G062800
Ledus.S5	AUGUSTUS	transcript	7481653	7482446	.	+	.	transcript_id "Ledus.S5G062800.t1"; gene_id "Ledus.S5G062800"
Ledus.S5	AUGUSTUS	start_codon	7481653	7481655	.	+	0	transcript_id "Ledus.S5G062800.t1"; gene_id "Ledus.S5G062800"
Ledus.S5	AUGUSTUS	CDS	7481653	7481938	0.45	+	0	transcript_id "Ledus.S5G062800.t1"; gene_id "Ledus.S5G062800"
Ledus.S5	AUGUSTUS	exon	7481653	7481938	.	+	.	transcript_id "Ledus.S5G062800.t1"; gene_id "Ledus.S5G062800"
Ledus.S5	AUGUSTUS	intron	7481939	7482087	.	+	.	transcript_id "Ledus.S5G062800.t1"; gene_id "Ledus.S5G062800"
Ledus.S5	AUGUSTUS	CDS	7482088	7482446	0.45	+	2	transcript_id "Ledus.S5G062800.t1"; gene_id "Ledus.S5G062800"
Ledus.S5	AUGUSTUS	exon	7482088	7482446	.	+	.	transcript_id "Ledus.S5G062800.t1"; gene_id "Ledus.S5G062800"
Ledus.S5	AUGUSTUS	stop_codon	7482447	7482449	.	+	0	transcript_id "Ledus.S5G062800.t1"; gene_id "Ledus.S5G062800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8486.t1 is derived from g13158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12178122	12178751	.	-	.	Ledus.S5G126400
Ledus.S5	AUGUSTUS	transcript	12178122	12178751	.	-	.	transcript_id "Ledus.S5G126400.t1"; gene_id "Ledus.S5G126400"
Ledus.S5	AUGUSTUS	stop_codon	12178119	12178121	.	-	0	transcript_id "Ledus.S5G126400.t1"; gene_id "Ledus.S5G126400"
Ledus.S5	AUGUSTUS	CDS	12178122	12178751	0.3	-	0	transcript_id "Ledus.S5G126400.t1"; gene_id "Ledus.S5G126400"
Ledus.S5	AUGUSTUS	exon	12178122	12178751	.	-	.	transcript_id "Ledus.S5G126400.t1"; gene_id "Ledus.S5G126400"
Ledus.S5	AUGUSTUS	start_codon	12178749	12178751	.	-	0	transcript_id "Ledus.S5G126400.t1"; gene_id "Ledus.S5G126400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4527.t1 is derived from g1964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17521793	17522086	.	+	.	Ledus.S1G194800
Ledus.S1	AUGUSTUS	transcript	17521793	17522086	.	+	.	transcript_id "Ledus.S1G194800.t1"; gene_id "Ledus.S1G194800"
Ledus.S1	AUGUSTUS	start_codon	17521793	17521795	.	+	0	transcript_id "Ledus.S1G194800.t1"; gene_id "Ledus.S1G194800"
Ledus.S1	AUGUSTUS	CDS	17521793	17522086	0.98	+	0	transcript_id "Ledus.S1G194800.t1"; gene_id "Ledus.S1G194800"
Ledus.S1	AUGUSTUS	exon	17521793	17522086	.	+	.	transcript_id "Ledus.S1G194800.t1"; gene_id "Ledus.S1G194800"
Ledus.S1	AUGUSTUS	stop_codon	17522087	17522089	.	+	0	transcript_id "Ledus.S1G194800.t1"; gene_id "Ledus.S1G194800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4785.t1 is derived from g2223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19760327	19762723	.	+	.	Ledus.S1G220600
Ledus.S1	AUGUSTUS	transcript	19760327	19762723	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	start_codon	19760327	19760329	.	+	0	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	CDS	19760327	19760645	0.95	+	0	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	exon	19760327	19760645	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	intron	19760646	19760747	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	CDS	19760748	19760941	1	+	2	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	exon	19760748	19760941	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	intron	19760942	19761031	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	CDS	19761032	19761238	1	+	0	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	exon	19761032	19761238	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	intron	19761239	19761320	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	CDS	19761321	19761438	1	+	0	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	exon	19761321	19761438	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	intron	19761439	19761658	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	CDS	19761659	19761735	1	+	2	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	exon	19761659	19761735	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	intron	19761736	19761818	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	CDS	19761819	19761998	1	+	0	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	exon	19761819	19761998	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	intron	19761999	19762097	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	CDS	19762098	19762142	1	+	0	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	exon	19762098	19762142	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	intron	19762143	19762284	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	CDS	19762285	19762389	1	+	0	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	exon	19762285	19762389	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	intron	19762390	19762480	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	CDS	19762481	19762594	1	+	0	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	exon	19762481	19762594	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	intron	19762595	19762675	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	CDS	19762676	19762723	0.99	+	0	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	exon	19762676	19762723	.	+	.	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
Ledus.S1	AUGUSTUS	stop_codon	19762724	19762726	.	+	0	transcript_id "Ledus.S1G220600.t1"; gene_id "Ledus.S1G220600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3168.t1 is derived from g603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6548109	6548393	.	-	.	Ledus.S1G058900
Ledus.S1	AUGUSTUS	transcript	6548109	6548393	.	-	.	transcript_id "Ledus.S1G058900.t1"; gene_id "Ledus.S1G058900"
Ledus.S1	AUGUSTUS	stop_codon	6548106	6548108	.	-	0	transcript_id "Ledus.S1G058900.t1"; gene_id "Ledus.S1G058900"
Ledus.S1	AUGUSTUS	CDS	6548109	6548393	0.48	-	0	transcript_id "Ledus.S1G058900.t1"; gene_id "Ledus.S1G058900"
Ledus.S1	AUGUSTUS	exon	6548109	6548393	.	-	.	transcript_id "Ledus.S1G058900.t1"; gene_id "Ledus.S1G058900"
Ledus.S1	AUGUSTUS	start_codon	6548391	6548393	.	-	0	transcript_id "Ledus.S1G058900.t1"; gene_id "Ledus.S1G058900"
# This transcript jg4522.t2 is derived from g1959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4523.t1 is derived from g1960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17507326	17508738	.	-	.	Ledus.S1G194400
Ledus.S1	AUGUSTUS	transcript	17507326	17508738	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	stop_codon	17507323	17507325	.	-	0	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	CDS	17507326	17507392	0.55	-	1	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	exon	17507326	17507392	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	intron	17507393	17507482	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	CDS	17507483	17507516	0.55	-	2	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	exon	17507483	17507516	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	intron	17507517	17507684	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	CDS	17507685	17507736	0.55	-	0	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	exon	17507685	17507736	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	intron	17507737	17507834	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	CDS	17507835	17507903	1	-	0	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	exon	17507835	17507903	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	intron	17507904	17508008	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	CDS	17508009	17508074	1	-	0	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	exon	17508009	17508074	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	intron	17508075	17508158	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	CDS	17508159	17508209	1	-	0	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	exon	17508159	17508209	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	intron	17508210	17508327	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	CDS	17508328	17508493	1	-	1	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	exon	17508328	17508493	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	intron	17508494	17508622	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	CDS	17508623	17508738	0.92	-	0	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	exon	17508623	17508738	.	-	.	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
Ledus.S1	AUGUSTUS	start_codon	17508736	17508738	.	-	0	transcript_id "Ledus.S1G194400.t1"; gene_id "Ledus.S1G194400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6766.t1 is derived from g4209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34012604	34016656	.	+	.	Ledus.S1G418700
Ledus.S1	AUGUSTUS	transcript	34012604	34016656	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	start_codon	34012604	34012606	.	+	0	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34012604	34012697	0.99	+	0	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34012604	34012697	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34012698	34012773	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34012774	34013338	1	+	2	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34012774	34013338	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34013339	34013412	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34013413	34013972	1	+	1	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34013413	34013972	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34013973	34014066	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34014067	34014199	1	+	2	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34014067	34014199	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34014200	34014299	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34014300	34014371	1	+	1	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34014300	34014371	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34014372	34014494	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34014495	34014566	1	+	1	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34014495	34014566	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34014567	34014718	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34014719	34014787	1	+	1	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34014719	34014787	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34014788	34014887	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34014888	34015051	1	+	1	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34014888	34015051	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34015052	34015146	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34015147	34015379	1	+	2	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34015147	34015379	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34015380	34015474	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34015475	34015601	1	+	0	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34015475	34015601	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34015602	34015693	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34015694	34015768	1	+	2	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34015694	34015768	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34015769	34015857	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34015858	34016050	1	+	2	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34015858	34016050	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34016051	34016135	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34016136	34016268	1	+	1	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34016136	34016268	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	intron	34016269	34016335	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	CDS	34016336	34016656	0.96	+	0	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	exon	34016336	34016656	.	+	.	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
Ledus.S1	AUGUSTUS	stop_codon	34016657	34016659	.	+	0	transcript_id "Ledus.S1G418700.t1"; gene_id "Ledus.S1G418700"
# This transcript jg11584.t2 is derived from g5202.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11585.t1 is derived from g5203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5399015	5400753	.	-	.	Ledus.S4G074100
Ledus.S4	AUGUSTUS	transcript	5399015	5400753	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	stop_codon	5399012	5399014	.	-	0	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	CDS	5399015	5399086	1	-	0	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	exon	5399015	5399086	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	intron	5399087	5399162	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	CDS	5399163	5399326	1	-	2	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	exon	5399163	5399326	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	intron	5399327	5399487	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	CDS	5399488	5399621	1	-	1	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	exon	5399488	5399621	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	intron	5399622	5399759	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	CDS	5399760	5399853	1	-	2	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	exon	5399760	5399853	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	intron	5399854	5400193	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	CDS	5400194	5400302	0.99	-	0	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	exon	5400194	5400302	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	intron	5400303	5400415	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	CDS	5400416	5400464	0.97	-	1	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	exon	5400416	5400464	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	intron	5400465	5400571	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	CDS	5400572	5400753	0.71	-	0	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	exon	5400572	5400753	.	-	.	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
Ledus.S4	AUGUSTUS	start_codon	5400751	5400753	.	-	0	transcript_id "Ledus.S4G074100.t1"; gene_id "Ledus.S4G074100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7408.t1 is derived from g12079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2127650	2130048	.	+	.	Ledus.S5G018600
Ledus.S5	AUGUSTUS	transcript	2127650	2130048	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	start_codon	2127650	2127652	.	+	0	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	CDS	2127650	2127777	0.99	+	0	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	exon	2127650	2127777	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	intron	2127778	2127852	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	CDS	2127853	2127894	1	+	1	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	exon	2127853	2127894	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	intron	2127895	2127987	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	CDS	2127988	2128132	0.81	+	1	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	exon	2127988	2128132	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	intron	2128133	2128236	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	CDS	2128237	2128466	1	+	0	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	exon	2128237	2128466	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	intron	2128467	2128643	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	CDS	2128644	2128701	1	+	1	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	exon	2128644	2128701	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	intron	2128702	2128869	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	CDS	2128870	2128947	1	+	0	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	exon	2128870	2128947	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	intron	2128948	2129154	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	CDS	2129155	2129243	1	+	0	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	exon	2129155	2129243	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	intron	2129244	2129385	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	CDS	2129386	2129467	1	+	1	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	exon	2129386	2129467	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	intron	2129468	2129618	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	CDS	2129619	2129777	1	+	0	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	exon	2129619	2129777	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	intron	2129778	2129877	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	CDS	2129878	2130048	0.7	+	0	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	exon	2129878	2130048	.	+	.	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
Ledus.S5	AUGUSTUS	stop_codon	2130049	2130051	.	+	0	transcript_id "Ledus.S5G018600.t1"; gene_id "Ledus.S5G018600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4627.t1 is derived from g2064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18352805	18353014	.	+	.	Ledus.S1G204800
Ledus.S1	AUGUSTUS	transcript	18352805	18353014	.	+	.	transcript_id "Ledus.S1G204800.t1"; gene_id "Ledus.S1G204800"
Ledus.S1	AUGUSTUS	start_codon	18352805	18352807	.	+	0	transcript_id "Ledus.S1G204800.t1"; gene_id "Ledus.S1G204800"
Ledus.S1	AUGUSTUS	CDS	18352805	18353014	0.94	+	0	transcript_id "Ledus.S1G204800.t1"; gene_id "Ledus.S1G204800"
Ledus.S1	AUGUSTUS	exon	18352805	18353014	.	+	.	transcript_id "Ledus.S1G204800.t1"; gene_id "Ledus.S1G204800"
Ledus.S1	AUGUSTUS	stop_codon	18353015	18353017	.	+	0	transcript_id "Ledus.S1G204800.t1"; gene_id "Ledus.S1G204800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9808.t1 is derived from g10838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9977817	9982109	.	-	.	Ledus.S3G128500
Ledus.S3	AUGUSTUS	transcript	9977817	9982109	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	stop_codon	9977814	9977816	.	-	0	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9977817	9978341	0.92	-	0	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9977817	9978341	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9978342	9978439	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9978440	9978486	1	-	2	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9978440	9978486	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9978487	9978580	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9978581	9978753	1	-	1	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9978581	9978753	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9978754	9978873	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9978874	9978936	0.77	-	1	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9978874	9978936	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9978937	9979068	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9979069	9979137	1	-	1	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9979069	9979137	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9979138	9979261	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9979262	9979334	1	-	2	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9979262	9979334	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9979335	9979520	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9979521	9979563	1	-	0	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9979521	9979563	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9979564	9979687	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9979688	9979760	1	-	1	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9979688	9979760	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9979761	9979853	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9979854	9979955	1	-	1	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9979854	9979955	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9979956	9980121	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9980122	9980747	0.95	-	0	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9980122	9980747	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9980748	9980823	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9980824	9980941	1	-	1	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9980824	9980941	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9980942	9981092	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9981093	9981130	1	-	0	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9981093	9981130	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9981131	9981227	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9981228	9981348	1	-	1	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9981228	9981348	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	intron	9981349	9981447	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	CDS	9981448	9982109	0.56	-	0	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	exon	9981448	9982109	.	-	.	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
Ledus.S3	AUGUSTUS	start_codon	9982107	9982109	.	-	0	transcript_id "Ledus.S3G128500.t1"; gene_id "Ledus.S3G128500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8442.t1 is derived from g13114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11707288	11710795	.	-	.	Ledus.S5G122000
Ledus.S5	AUGUSTUS	transcript	11707288	11710795	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	stop_codon	11707285	11707287	.	-	0	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	CDS	11707288	11707743	0.64	-	0	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	exon	11707288	11707743	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	intron	11707744	11707866	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	CDS	11707867	11707941	1	-	0	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	exon	11707867	11707941	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	intron	11707942	11708087	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	CDS	11708088	11708195	1	-	0	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	exon	11708088	11708195	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	intron	11708196	11708315	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	CDS	11708316	11708408	1	-	0	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	exon	11708316	11708408	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	intron	11708409	11708598	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	CDS	11708599	11708682	1	-	0	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	exon	11708599	11708682	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	intron	11708683	11708797	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	CDS	11708798	11708874	1	-	2	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	exon	11708798	11708874	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	intron	11708875	11709116	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	CDS	11709117	11709190	1	-	1	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	exon	11709117	11709190	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	intron	11709191	11709296	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	CDS	11709297	11709410	1	-	1	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	exon	11709297	11709410	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	intron	11709411	11709580	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	CDS	11709581	11709660	1	-	0	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	exon	11709581	11709660	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	intron	11709661	11709802	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	CDS	11709803	11709895	1	-	0	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	exon	11709803	11709895	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	intron	11709896	11710033	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	CDS	11710034	11710162	1	-	0	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	exon	11710034	11710162	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	intron	11710163	11710357	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	CDS	11710358	11710795	1	-	0	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	exon	11710358	11710795	.	-	.	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
Ledus.S5	AUGUSTUS	start_codon	11710793	11710795	.	-	0	transcript_id "Ledus.S5G122000.t1"; gene_id "Ledus.S5G122000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6969.t1 is derived from g6500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	480821	484021	.	+	.	Ledus.C7G003000
Ledus.C7	AUGUSTUS	transcript	480821	484021	.	+	.	transcript_id "Ledus.C7G003000.t1"; gene_id "Ledus.C7G003000"
Ledus.C7	AUGUSTUS	start_codon	480821	480823	.	+	0	transcript_id "Ledus.C7G003000.t1"; gene_id "Ledus.C7G003000"
Ledus.C7	AUGUSTUS	CDS	480821	484021	1	+	0	transcript_id "Ledus.C7G003000.t1"; gene_id "Ledus.C7G003000"
Ledus.C7	AUGUSTUS	exon	480821	484021	.	+	.	transcript_id "Ledus.C7G003000.t1"; gene_id "Ledus.C7G003000"
Ledus.C7	AUGUSTUS	stop_codon	484022	484024	.	+	0	transcript_id "Ledus.C7G003000.t1"; gene_id "Ledus.C7G003000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6126.t1 is derived from g3569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29062449	29062964	.	-	.	Ledus.S1G354700
Ledus.S1	AUGUSTUS	transcript	29062449	29062964	.	-	.	transcript_id "Ledus.S1G354700.t1"; gene_id "Ledus.S1G354700"
Ledus.S1	AUGUSTUS	stop_codon	29062446	29062448	.	-	0	transcript_id "Ledus.S1G354700.t1"; gene_id "Ledus.S1G354700"
Ledus.S1	AUGUSTUS	CDS	29062449	29062655	0.86	-	0	transcript_id "Ledus.S1G354700.t1"; gene_id "Ledus.S1G354700"
Ledus.S1	AUGUSTUS	exon	29062449	29062655	.	-	.	transcript_id "Ledus.S1G354700.t1"; gene_id "Ledus.S1G354700"
Ledus.S1	AUGUSTUS	intron	29062656	29062753	.	-	.	transcript_id "Ledus.S1G354700.t1"; gene_id "Ledus.S1G354700"
Ledus.S1	AUGUSTUS	CDS	29062754	29062812	1	-	2	transcript_id "Ledus.S1G354700.t1"; gene_id "Ledus.S1G354700"
Ledus.S1	AUGUSTUS	exon	29062754	29062812	.	-	.	transcript_id "Ledus.S1G354700.t1"; gene_id "Ledus.S1G354700"
Ledus.S1	AUGUSTUS	intron	29062813	29062900	.	-	.	transcript_id "Ledus.S1G354700.t1"; gene_id "Ledus.S1G354700"
Ledus.S1	AUGUSTUS	CDS	29062901	29062964	0.97	-	0	transcript_id "Ledus.S1G354700.t1"; gene_id "Ledus.S1G354700"
Ledus.S1	AUGUSTUS	exon	29062901	29062964	.	-	.	transcript_id "Ledus.S1G354700.t1"; gene_id "Ledus.S1G354700"
Ledus.S1	AUGUSTUS	start_codon	29062962	29062964	.	-	0	transcript_id "Ledus.S1G354700.t1"; gene_id "Ledus.S1G354700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3552.t1 is derived from g988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9419586	9419792	.	+	.	Ledus.S1G097300
Ledus.S1	AUGUSTUS	transcript	9419586	9419792	.	+	.	transcript_id "Ledus.S1G097300.t1"; gene_id "Ledus.S1G097300"
Ledus.S1	AUGUSTUS	start_codon	9419586	9419588	.	+	0	transcript_id "Ledus.S1G097300.t1"; gene_id "Ledus.S1G097300"
Ledus.S1	AUGUSTUS	CDS	9419586	9419792	0.71	+	0	transcript_id "Ledus.S1G097300.t1"; gene_id "Ledus.S1G097300"
Ledus.S1	AUGUSTUS	exon	9419586	9419792	.	+	.	transcript_id "Ledus.S1G097300.t1"; gene_id "Ledus.S1G097300"
Ledus.S1	AUGUSTUS	stop_codon	9419793	9419795	.	+	0	transcript_id "Ledus.S1G097300.t1"; gene_id "Ledus.S1G097300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9295.t1 is derived from g10325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5823550	5828232	.	-	.	Ledus.S3G077200
Ledus.S3	AUGUSTUS	transcript	5823550	5828232	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	stop_codon	5823547	5823549	.	-	0	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5823550	5824179	0.74	-	0	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5823550	5824179	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5824180	5824267	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5824268	5824330	1	-	0	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5824268	5824330	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5824331	5824430	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5824431	5824569	1	-	1	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5824431	5824569	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5824570	5824661	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5824662	5824930	1	-	0	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5824662	5824930	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5824931	5825020	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5825021	5825143	1	-	0	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5825021	5825143	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5825144	5825238	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5825239	5825418	1	-	0	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5825239	5825418	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5825419	5825513	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5825514	5825678	1	-	0	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5825514	5825678	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5825679	5825762	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5825763	5825953	1	-	2	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5825763	5825953	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5825954	5826043	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5826044	5826443	1	-	0	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5826044	5826443	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5826444	5826539	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5826540	5826592	0.99	-	2	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5826540	5826592	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5826593	5826707	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5826708	5826782	0.97	-	2	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5826708	5826782	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5826783	5826882	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5826883	5826961	1	-	0	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5826883	5826961	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5826962	5827216	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5827217	5827311	0.91	-	2	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5827217	5827311	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5827312	5827404	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5827405	5827526	1	-	1	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5827405	5827526	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5827527	5827601	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5827602	5827911	0.8	-	2	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5827602	5827911	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5827912	5828012	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5828013	5828232	0.41	-	0	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5828013	5828232	.	-	.	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	start_codon	5828230	5828232	.	-	0	transcript_id "Ledus.S3G077200.t1"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	transcript	5823550	5828232	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	stop_codon	5823547	5823549	.	-	0	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5823550	5824179	0.73	-	0	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5823550	5824179	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5824180	5824267	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5824268	5824330	1	-	0	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5824268	5824330	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5824331	5824430	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5824431	5824569	1	-	1	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5824431	5824569	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5824570	5824661	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5824662	5824930	1	-	0	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5824662	5824930	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5824931	5825020	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5825021	5825143	1	-	0	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5825021	5825143	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5825144	5825238	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5825239	5825418	1	-	0	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5825239	5825418	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5825419	5825513	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5825514	5825681	1	-	0	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5825514	5825681	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5825682	5825762	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5825763	5825953	1	-	2	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5825763	5825953	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5825954	5826043	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5826044	5826443	1	-	0	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5826044	5826443	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5826444	5826539	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5826540	5826592	1	-	2	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5826540	5826592	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5826593	5826707	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5826708	5826782	0.96	-	2	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5826708	5826782	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5826783	5826882	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5826883	5826961	1	-	0	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5826883	5826961	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5826962	5827216	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5827217	5827311	0.97	-	2	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5827217	5827311	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5827312	5827404	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5827405	5827526	1	-	1	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5827405	5827526	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5827527	5827601	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5827602	5827911	0.84	-	2	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5827602	5827911	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	intron	5827912	5828012	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	CDS	5828013	5828232	0.37	-	0	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	exon	5828013	5828232	.	-	.	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
Ledus.S3	AUGUSTUS	start_codon	5828230	5828232	.	-	0	transcript_id "Ledus.S3G077200.t2"; gene_id "Ledus.S3G077200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8810.t1 is derived from g9840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2082514	2082804	.	+	.	Ledus.S3G028700
Ledus.S3	AUGUSTUS	transcript	2082514	2082804	.	+	.	transcript_id "Ledus.S3G028700.t1"; gene_id "Ledus.S3G028700"
Ledus.S3	AUGUSTUS	start_codon	2082514	2082516	.	+	0	transcript_id "Ledus.S3G028700.t1"; gene_id "Ledus.S3G028700"
Ledus.S3	AUGUSTUS	CDS	2082514	2082804	0.71	+	0	transcript_id "Ledus.S3G028700.t1"; gene_id "Ledus.S3G028700"
Ledus.S3	AUGUSTUS	exon	2082514	2082804	.	+	.	transcript_id "Ledus.S3G028700.t1"; gene_id "Ledus.S3G028700"
Ledus.S3	AUGUSTUS	stop_codon	2082805	2082807	.	+	0	transcript_id "Ledus.S3G028700.t1"; gene_id "Ledus.S3G028700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6171.t1 is derived from g3614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29386365	29388017	.	+	.	Ledus.S1G359200
Ledus.S1	AUGUSTUS	transcript	29386365	29388017	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	start_codon	29386365	29386367	.	+	0	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	CDS	29386365	29386417	0.74	+	0	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	exon	29386365	29386417	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	intron	29386418	29386840	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	CDS	29386841	29386867	1	+	1	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	exon	29386841	29386867	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	intron	29386868	29386984	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	CDS	29386985	29387084	1	+	1	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	exon	29386985	29387084	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	intron	29387085	29387172	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	CDS	29387173	29387319	1	+	0	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	exon	29387173	29387319	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	intron	29387320	29387521	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	CDS	29387522	29387602	1	+	0	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	exon	29387522	29387602	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	intron	29387603	29387708	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	CDS	29387709	29387854	1	+	0	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	exon	29387709	29387854	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	intron	29387855	29387953	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	CDS	29387954	29388017	0.3	+	1	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	exon	29387954	29388017	.	+	.	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
Ledus.S1	AUGUSTUS	stop_codon	29388018	29388020	.	+	0	transcript_id "Ledus.S1G359200.t1"; gene_id "Ledus.S1G359200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5539.t1 is derived from g2978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25042311	25043424	.	-	.	Ledus.S1G296000
Ledus.S1	AUGUSTUS	transcript	25042311	25043424	.	-	.	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	stop_codon	25042308	25042310	.	-	0	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	CDS	25042311	25042399	0.95	-	2	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	exon	25042311	25042399	.	-	.	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	intron	25042400	25042559	.	-	.	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	CDS	25042560	25042601	0.58	-	2	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	exon	25042560	25042601	.	-	.	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	intron	25042602	25042717	.	-	.	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	CDS	25042718	25042730	0.56	-	0	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	exon	25042718	25042730	.	-	.	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	intron	25042731	25042838	.	-	.	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	CDS	25042839	25042905	1	-	1	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	exon	25042839	25042905	.	-	.	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	intron	25042906	25043027	.	-	.	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	CDS	25043028	25043185	1	-	0	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	exon	25043028	25043185	.	-	.	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	intron	25043186	25043292	.	-	.	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	CDS	25043293	25043424	1	-	0	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	exon	25043293	25043424	.	-	.	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
Ledus.S1	AUGUSTUS	start_codon	25043422	25043424	.	-	0	transcript_id "Ledus.S1G296000.t1"; gene_id "Ledus.S1G296000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11537.t1 is derived from g5155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5178939	5180264	.	-	.	Ledus.S4G069300
Ledus.S4	AUGUSTUS	transcript	5178939	5180264	.	-	.	transcript_id "Ledus.S4G069300.t1"; gene_id "Ledus.S4G069300"
Ledus.S4	AUGUSTUS	stop_codon	5178936	5178938	.	-	0	transcript_id "Ledus.S4G069300.t1"; gene_id "Ledus.S4G069300"
Ledus.S4	AUGUSTUS	CDS	5178939	5180264	0.92	-	0	transcript_id "Ledus.S4G069300.t1"; gene_id "Ledus.S4G069300"
Ledus.S4	AUGUSTUS	exon	5178939	5180264	.	-	.	transcript_id "Ledus.S4G069300.t1"; gene_id "Ledus.S4G069300"
Ledus.S4	AUGUSTUS	start_codon	5180262	5180264	.	-	0	transcript_id "Ledus.S4G069300.t1"; gene_id "Ledus.S4G069300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9201.t1 is derived from g10231.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5325974	5327176	.	+	.	Ledus.S3G067800
Ledus.S3	AUGUSTUS	transcript	5325981	5327176	.	+	.	transcript_id "Ledus.S3G067800.t1"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	start_codon	5325981	5325983	.	+	0	transcript_id "Ledus.S3G067800.t1"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	CDS	5325981	5326022	0.99	+	0	transcript_id "Ledus.S3G067800.t1"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	exon	5325981	5326022	.	+	.	transcript_id "Ledus.S3G067800.t1"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	intron	5326023	5326164	.	+	.	transcript_id "Ledus.S3G067800.t1"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	CDS	5326165	5326407	0.98	+	0	transcript_id "Ledus.S3G067800.t1"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	exon	5326165	5326407	.	+	.	transcript_id "Ledus.S3G067800.t1"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	intron	5326408	5326516	.	+	.	transcript_id "Ledus.S3G067800.t1"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	CDS	5326517	5327176	0.69	+	0	transcript_id "Ledus.S3G067800.t1"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	exon	5326517	5327176	.	+	.	transcript_id "Ledus.S3G067800.t1"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	stop_codon	5327177	5327179	.	+	0	transcript_id "Ledus.S3G067800.t1"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	transcript	5325974	5327176	.	+	.	transcript_id "Ledus.S3G067800.t2"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	start_codon	5325974	5325976	.	+	0	transcript_id "Ledus.S3G067800.t2"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	CDS	5325974	5326022	0.62	+	0	transcript_id "Ledus.S3G067800.t2"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	exon	5325974	5326022	.	+	.	transcript_id "Ledus.S3G067800.t2"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	intron	5326023	5326186	.	+	.	transcript_id "Ledus.S3G067800.t2"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	CDS	5326187	5326407	1	+	2	transcript_id "Ledus.S3G067800.t2"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	exon	5326187	5326407	.	+	.	transcript_id "Ledus.S3G067800.t2"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	intron	5326408	5326516	.	+	.	transcript_id "Ledus.S3G067800.t2"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	CDS	5326517	5327176	0.71	+	0	transcript_id "Ledus.S3G067800.t2"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	exon	5326517	5327176	.	+	.	transcript_id "Ledus.S3G067800.t2"; gene_id "Ledus.S3G067800"
Ledus.S3	AUGUSTUS	stop_codon	5327177	5327179	.	+	0	transcript_id "Ledus.S3G067800.t2"; gene_id "Ledus.S3G067800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg404.t1 is derived from g7265.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2235138	2236143	.	-	.	Ledus.S2G028600
Ledus.S2	AUGUSTUS	transcript	2235138	2236143	.	-	.	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	stop_codon	2235135	2235137	.	-	0	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	CDS	2235138	2235396	0.17	-	1	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	exon	2235138	2235396	.	-	.	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	intron	2235397	2235482	.	-	.	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	CDS	2235483	2235687	0.86	-	2	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	exon	2235483	2235687	.	-	.	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	intron	2235688	2235805	.	-	.	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	CDS	2235806	2235904	0.91	-	2	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	exon	2235806	2235904	.	-	.	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	intron	2235905	2236097	.	-	.	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	CDS	2236098	2236143	0.91	-	0	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	exon	2236098	2236143	.	-	.	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
Ledus.S2	AUGUSTUS	start_codon	2236141	2236143	.	-	0	transcript_id "Ledus.S2G028600.t1"; gene_id "Ledus.S2G028600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9939.t1 is derived from g10969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11315734	11316027	.	+	.	Ledus.S3G141600
Ledus.S3	AUGUSTUS	transcript	11315734	11316027	.	+	.	transcript_id "Ledus.S3G141600.t1"; gene_id "Ledus.S3G141600"
Ledus.S3	AUGUSTUS	start_codon	11315734	11315736	.	+	0	transcript_id "Ledus.S3G141600.t1"; gene_id "Ledus.S3G141600"
Ledus.S3	AUGUSTUS	CDS	11315734	11316027	0.33	+	0	transcript_id "Ledus.S3G141600.t1"; gene_id "Ledus.S3G141600"
Ledus.S3	AUGUSTUS	exon	11315734	11316027	.	+	.	transcript_id "Ledus.S3G141600.t1"; gene_id "Ledus.S3G141600"
Ledus.S3	AUGUSTUS	stop_codon	11316028	11316030	.	+	0	transcript_id "Ledus.S3G141600.t1"; gene_id "Ledus.S3G141600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg836.t1 is derived from g7697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5533596	5533979	.	-	.	Ledus.S2G071800
Ledus.S2	AUGUSTUS	transcript	5533596	5533979	.	-	.	transcript_id "Ledus.S2G071800.t1"; gene_id "Ledus.S2G071800"
Ledus.S2	AUGUSTUS	stop_codon	5533593	5533595	.	-	0	transcript_id "Ledus.S2G071800.t1"; gene_id "Ledus.S2G071800"
Ledus.S2	AUGUSTUS	CDS	5533596	5533979	0.4	-	0	transcript_id "Ledus.S2G071800.t1"; gene_id "Ledus.S2G071800"
Ledus.S2	AUGUSTUS	exon	5533596	5533979	.	-	.	transcript_id "Ledus.S2G071800.t1"; gene_id "Ledus.S2G071800"
Ledus.S2	AUGUSTUS	start_codon	5533977	5533979	.	-	0	transcript_id "Ledus.S2G071800.t1"; gene_id "Ledus.S2G071800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8895.t1 is derived from g9925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2926262	2927711	.	+	.	Ledus.S3G037200
Ledus.S3	AUGUSTUS	transcript	2926262	2927711	.	+	.	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	start_codon	2926262	2926264	.	+	0	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	CDS	2926262	2926804	0.49	+	0	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	exon	2926262	2926804	.	+	.	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	intron	2926805	2927228	.	+	.	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	CDS	2927229	2927310	0.99	+	0	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	exon	2927229	2927310	.	+	.	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	intron	2927311	2927481	.	+	.	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	CDS	2927482	2927529	0.98	+	2	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	exon	2927482	2927529	.	+	.	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	intron	2927530	2927661	.	+	.	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	CDS	2927662	2927711	1	+	2	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	exon	2927662	2927711	.	+	.	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
Ledus.S3	AUGUSTUS	stop_codon	2927712	2927714	.	+	0	transcript_id "Ledus.S3G037200.t1"; gene_id "Ledus.S3G037200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6344.t1 is derived from g3787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30680419	30680646	.	+	.	Ledus.S1G376500
Ledus.S1	AUGUSTUS	transcript	30680419	30680646	.	+	.	transcript_id "Ledus.S1G376500.t1"; gene_id "Ledus.S1G376500"
Ledus.S1	AUGUSTUS	start_codon	30680419	30680421	.	+	0	transcript_id "Ledus.S1G376500.t1"; gene_id "Ledus.S1G376500"
Ledus.S1	AUGUSTUS	CDS	30680419	30680646	0.01	+	0	transcript_id "Ledus.S1G376500.t1"; gene_id "Ledus.S1G376500"
Ledus.S1	AUGUSTUS	exon	30680419	30680646	.	+	.	transcript_id "Ledus.S1G376500.t1"; gene_id "Ledus.S1G376500"
Ledus.S1	AUGUSTUS	stop_codon	30680647	30680649	.	+	0	transcript_id "Ledus.S1G376500.t1"; gene_id "Ledus.S1G376500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2679.t1 is derived from g112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1622064	1623394	.	-	.	Ledus.S1G010000
Ledus.S1	AUGUSTUS	transcript	1622064	1623394	.	-	.	transcript_id "Ledus.S1G010000.t1"; gene_id "Ledus.S1G010000"
Ledus.S1	AUGUSTUS	stop_codon	1622061	1622063	.	-	0	transcript_id "Ledus.S1G010000.t1"; gene_id "Ledus.S1G010000"
Ledus.S1	AUGUSTUS	CDS	1622064	1622354	1	-	0	transcript_id "Ledus.S1G010000.t1"; gene_id "Ledus.S1G010000"
Ledus.S1	AUGUSTUS	exon	1622064	1622354	.	-	.	transcript_id "Ledus.S1G010000.t1"; gene_id "Ledus.S1G010000"
Ledus.S1	AUGUSTUS	intron	1622355	1622447	.	-	.	transcript_id "Ledus.S1G010000.t1"; gene_id "Ledus.S1G010000"
Ledus.S1	AUGUSTUS	CDS	1622448	1623020	0.93	-	0	transcript_id "Ledus.S1G010000.t1"; gene_id "Ledus.S1G010000"
Ledus.S1	AUGUSTUS	exon	1622448	1623020	.	-	.	transcript_id "Ledus.S1G010000.t1"; gene_id "Ledus.S1G010000"
Ledus.S1	AUGUSTUS	intron	1623021	1623094	.	-	.	transcript_id "Ledus.S1G010000.t1"; gene_id "Ledus.S1G010000"
Ledus.S1	AUGUSTUS	CDS	1623095	1623394	0.99	-	0	transcript_id "Ledus.S1G010000.t1"; gene_id "Ledus.S1G010000"
Ledus.S1	AUGUSTUS	exon	1623095	1623394	.	-	.	transcript_id "Ledus.S1G010000.t1"; gene_id "Ledus.S1G010000"
Ledus.S1	AUGUSTUS	start_codon	1623392	1623394	.	-	0	transcript_id "Ledus.S1G010000.t1"; gene_id "Ledus.S1G010000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5955.t1 is derived from g3398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28041180	28042070	.	+	.	Ledus.S1G337600
Ledus.S1	AUGUSTUS	transcript	28041180	28042070	.	+	.	transcript_id "Ledus.S1G337600.t1"; gene_id "Ledus.S1G337600"
Ledus.S1	AUGUSTUS	start_codon	28041180	28041182	.	+	0	transcript_id "Ledus.S1G337600.t1"; gene_id "Ledus.S1G337600"
Ledus.S1	AUGUSTUS	CDS	28041180	28041232	0.99	+	0	transcript_id "Ledus.S1G337600.t1"; gene_id "Ledus.S1G337600"
Ledus.S1	AUGUSTUS	exon	28041180	28041232	.	+	.	transcript_id "Ledus.S1G337600.t1"; gene_id "Ledus.S1G337600"
Ledus.S1	AUGUSTUS	intron	28041233	28041663	.	+	.	transcript_id "Ledus.S1G337600.t1"; gene_id "Ledus.S1G337600"
Ledus.S1	AUGUSTUS	CDS	28041664	28041721	0.86	+	1	transcript_id "Ledus.S1G337600.t1"; gene_id "Ledus.S1G337600"
Ledus.S1	AUGUSTUS	exon	28041664	28041721	.	+	.	transcript_id "Ledus.S1G337600.t1"; gene_id "Ledus.S1G337600"
Ledus.S1	AUGUSTUS	intron	28041722	28041791	.	+	.	transcript_id "Ledus.S1G337600.t1"; gene_id "Ledus.S1G337600"
Ledus.S1	AUGUSTUS	CDS	28041792	28042070	0.49	+	0	transcript_id "Ledus.S1G337600.t1"; gene_id "Ledus.S1G337600"
Ledus.S1	AUGUSTUS	exon	28041792	28042070	.	+	.	transcript_id "Ledus.S1G337600.t1"; gene_id "Ledus.S1G337600"
Ledus.S1	AUGUSTUS	stop_codon	28042071	28042073	.	+	0	transcript_id "Ledus.S1G337600.t1"; gene_id "Ledus.S1G337600"
# This transcript jg4684.t2 is derived from g2122.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4684.t3 is derived from g2122.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4685.t1 is derived from g2123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18982948	18986524	.	-	.	Ledus.S1G210600
Ledus.S1	AUGUSTUS	transcript	18982948	18986524	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	stop_codon	18982945	18982947	.	-	0	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18982948	18982956	1	-	0	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18982948	18982956	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18982957	18983041	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18983042	18983065	1	-	0	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18983042	18983065	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18983066	18983678	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18983679	18983843	1	-	0	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18983679	18983843	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18983844	18984223	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18984224	18984277	1	-	0	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18984224	18984277	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18984278	18984388	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18984389	18984484	1	-	0	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18984389	18984484	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18984485	18984586	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18984587	18984654	1	-	2	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18984587	18984654	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18984655	18984846	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18984847	18984904	1	-	0	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18984847	18984904	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18984905	18984984	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18984985	18985071	1	-	0	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18984985	18985071	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18985072	18985155	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18985156	18985203	1	-	0	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18985156	18985203	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18985204	18985285	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18985286	18985342	0.96	-	0	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18985286	18985342	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18985343	18985447	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18985448	18985706	1	-	1	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18985448	18985706	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18985707	18985798	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18985799	18985991	1	-	2	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18985799	18985991	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18985992	18986113	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18986114	18986221	1	-	2	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18986114	18986221	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	intron	18986222	18986352	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	CDS	18986353	18986524	0.75	-	0	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	exon	18986353	18986524	.	-	.	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
Ledus.S1	AUGUSTUS	start_codon	18986522	18986524	.	-	0	transcript_id "Ledus.S1G210600.t1"; gene_id "Ledus.S1G210600"
# This transcript jg13063.t2 is derived from g6873.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg13063.t3 is derived from g6873.t5 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 2 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg13063.t4 is derived from g6873.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13064.t1 is derived from g6874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4772545	4772742	.	+	.	Ledus.S6G012600
Ledus.S6	AUGUSTUS	transcript	4772545	4772742	.	+	.	transcript_id "Ledus.S6G012600.t1"; gene_id "Ledus.S6G012600"
Ledus.S6	AUGUSTUS	start_codon	4772545	4772547	.	+	0	transcript_id "Ledus.S6G012600.t1"; gene_id "Ledus.S6G012600"
Ledus.S6	AUGUSTUS	CDS	4772545	4772742	0.66	+	0	transcript_id "Ledus.S6G012600.t1"; gene_id "Ledus.S6G012600"
Ledus.S6	AUGUSTUS	exon	4772545	4772742	.	+	.	transcript_id "Ledus.S6G012600.t1"; gene_id "Ledus.S6G012600"
Ledus.S6	AUGUSTUS	stop_codon	4772743	4772745	.	+	0	transcript_id "Ledus.S6G012600.t1"; gene_id "Ledus.S6G012600"
# This transcript jg7580.t2 is derived from g12251.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7581.t1 is derived from g12252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4179449	4180505	.	-	.	Ledus.S5G035900
Ledus.S5	AUGUSTUS	transcript	4179449	4180505	.	-	.	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	stop_codon	4179446	4179448	.	-	0	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	CDS	4179449	4179538	1	-	0	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	exon	4179449	4179538	.	-	.	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	intron	4179539	4179614	.	-	.	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	CDS	4179615	4179724	1	-	2	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	exon	4179615	4179724	.	-	.	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	intron	4179725	4179799	.	-	.	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	CDS	4179800	4179868	1	-	2	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	exon	4179800	4179868	.	-	.	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	intron	4179869	4179951	.	-	.	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	CDS	4179952	4180042	1	-	0	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	exon	4179952	4180042	.	-	.	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	intron	4180043	4180120	.	-	.	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	CDS	4180121	4180227	1	-	2	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	exon	4180121	4180227	.	-	.	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	intron	4180228	4180342	.	-	.	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	CDS	4180343	4180505	0.62	-	0	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	exon	4180343	4180505	.	-	.	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
Ledus.S5	AUGUSTUS	start_codon	4180503	4180505	.	-	0	transcript_id "Ledus.S5G035900.t1"; gene_id "Ledus.S5G035900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1016.t1 is derived from g7877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6779897	6781468	.	+	.	Ledus.S2G089800
Ledus.S2	AUGUSTUS	transcript	6779897	6781468	.	+	.	transcript_id "Ledus.S2G089800.t1"; gene_id "Ledus.S2G089800"
Ledus.S2	AUGUSTUS	start_codon	6779897	6779899	.	+	0	transcript_id "Ledus.S2G089800.t1"; gene_id "Ledus.S2G089800"
Ledus.S2	AUGUSTUS	CDS	6779897	6781468	1	+	0	transcript_id "Ledus.S2G089800.t1"; gene_id "Ledus.S2G089800"
Ledus.S2	AUGUSTUS	exon	6779897	6781468	.	+	.	transcript_id "Ledus.S2G089800.t1"; gene_id "Ledus.S2G089800"
Ledus.S2	AUGUSTUS	stop_codon	6781469	6781471	.	+	0	transcript_id "Ledus.S2G089800.t1"; gene_id "Ledus.S2G089800"
Ledus.S2	AUGUSTUS	transcript	6780950	6781468	.	+	.	transcript_id "Ledus.S2G089800.t2"; gene_id "Ledus.S2G089800"
Ledus.S2	AUGUSTUS	start_codon	6780950	6780952	.	+	0	transcript_id "Ledus.S2G089800.t2"; gene_id "Ledus.S2G089800"
Ledus.S2	AUGUSTUS	CDS	6780950	6781468	0.46	+	0	transcript_id "Ledus.S2G089800.t2"; gene_id "Ledus.S2G089800"
Ledus.S2	AUGUSTUS	exon	6780950	6781468	.	+	.	transcript_id "Ledus.S2G089800.t2"; gene_id "Ledus.S2G089800"
Ledus.S2	AUGUSTUS	stop_codon	6781469	6781471	.	+	0	transcript_id "Ledus.S2G089800.t2"; gene_id "Ledus.S2G089800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg445.t1 is derived from g7306.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2648351	2650503	.	+	.	Ledus.S2G032700
Ledus.S2	AUGUSTUS	transcript	2648351	2650503	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	start_codon	2648351	2648353	.	+	0	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	CDS	2648351	2648381	0.99	+	0	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	exon	2648351	2648381	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	intron	2648382	2648606	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	CDS	2648607	2648701	1	+	2	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	exon	2648607	2648701	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	intron	2648702	2648846	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	CDS	2648847	2648959	1	+	0	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	exon	2648847	2648959	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	intron	2648960	2649047	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	CDS	2649048	2649150	1	+	1	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	exon	2649048	2649150	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	intron	2649151	2649575	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	CDS	2649576	2649644	1	+	0	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	exon	2649576	2649644	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	intron	2649645	2649742	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	CDS	2649743	2649885	1	+	0	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	exon	2649743	2649885	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	intron	2649886	2650043	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	CDS	2650044	2650088	1	+	1	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	exon	2650044	2650088	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	intron	2650089	2650173	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	CDS	2650174	2650265	1	+	1	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	exon	2650174	2650265	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	intron	2650266	2650348	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	CDS	2650349	2650503	1	+	2	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	exon	2650349	2650503	.	+	.	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
Ledus.S2	AUGUSTUS	stop_codon	2650504	2650506	.	+	0	transcript_id "Ledus.S2G032700.t1"; gene_id "Ledus.S2G032700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4544.t1 is derived from g1981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17607364	17609684	.	+	.	Ledus.S1G196500
Ledus.S1	AUGUSTUS	transcript	17607364	17609684	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	start_codon	17607364	17607366	.	+	0	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	CDS	17607364	17607583	0.98	+	0	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	exon	17607364	17607583	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	intron	17607584	17607714	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	CDS	17607715	17607761	0.96	+	2	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	exon	17607715	17607761	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	intron	17607762	17607885	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	CDS	17607886	17608051	0.88	+	0	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	exon	17607886	17608051	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	intron	17608052	17608137	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	CDS	17608138	17608283	0.63	+	2	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	exon	17608138	17608283	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	intron	17608284	17608382	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	CDS	17608383	17608550	0.64	+	0	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	exon	17608383	17608550	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	intron	17608551	17608640	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	CDS	17608641	17608923	1	+	0	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	exon	17608641	17608923	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	intron	17608924	17608992	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	CDS	17608993	17609054	1	+	2	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	exon	17608993	17609054	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	intron	17609055	17609124	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	CDS	17609125	17609249	0.94	+	0	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	exon	17609125	17609249	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	intron	17609250	17609321	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	CDS	17609322	17609493	0.97	+	1	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	exon	17609322	17609493	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	intron	17609494	17609597	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	CDS	17609598	17609684	0.5	+	0	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	exon	17609598	17609684	.	+	.	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
Ledus.S1	AUGUSTUS	stop_codon	17609685	17609687	.	+	0	transcript_id "Ledus.S1G196500.t1"; gene_id "Ledus.S1G196500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7471.t1 is derived from g12142.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3017861	3018845	.	-	.	Ledus.S5G024900
Ledus.S5	AUGUSTUS	transcript	3017861	3018790	.	-	.	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	stop_codon	3017858	3017860	.	-	0	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	CDS	3017861	3018028	1	-	0	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	exon	3017861	3018028	.	-	.	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	intron	3018029	3018113	.	-	.	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	CDS	3018114	3018182	1	-	0	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	exon	3018114	3018182	.	-	.	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	intron	3018183	3018262	.	-	.	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	CDS	3018263	3018383	1	-	1	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	exon	3018263	3018383	.	-	.	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	intron	3018384	3018486	.	-	.	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	CDS	3018487	3018559	1	-	2	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	exon	3018487	3018559	.	-	.	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	intron	3018560	3018708	.	-	.	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	CDS	3018709	3018790	1	-	0	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	exon	3018709	3018790	.	-	.	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	start_codon	3018788	3018790	.	-	0	transcript_id "Ledus.S5G024900.t1"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	transcript	3017861	3018845	.	-	.	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	stop_codon	3017858	3017860	.	-	0	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	CDS	3017861	3018028	1	-	0	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	exon	3017861	3018028	.	-	.	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	intron	3018029	3018113	.	-	.	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	CDS	3018114	3018182	1	-	0	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	exon	3018114	3018182	.	-	.	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	intron	3018183	3018262	.	-	.	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	CDS	3018263	3018559	0.93	-	0	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	exon	3018263	3018559	.	-	.	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	intron	3018560	3018797	.	-	.	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	CDS	3018798	3018845	0.5	-	0	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	exon	3018798	3018845	.	-	.	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
Ledus.S5	AUGUSTUS	start_codon	3018843	3018845	.	-	0	transcript_id "Ledus.S5G024900.t2"; gene_id "Ledus.S5G024900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12816.t1 is derived from g6438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15032460	15033635	.	+	.	Ledus.S4G197200
Ledus.S4	AUGUSTUS	transcript	15032460	15033635	.	+	.	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	start_codon	15032460	15032462	.	+	0	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	CDS	15032460	15032602	0.37	+	0	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	exon	15032460	15032602	.	+	.	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	intron	15032603	15032806	.	+	.	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	CDS	15032807	15032845	0.43	+	1	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	exon	15032807	15032845	.	+	.	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	intron	15032846	15032974	.	+	.	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	CDS	15032975	15033130	1	+	1	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	exon	15032975	15033130	.	+	.	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	intron	15033131	15033273	.	+	.	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	CDS	15033274	15033400	1	+	1	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	exon	15033274	15033400	.	+	.	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	intron	15033401	15033497	.	+	.	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	CDS	15033498	15033635	0.94	+	0	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	exon	15033498	15033635	.	+	.	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
Ledus.S4	AUGUSTUS	stop_codon	15033636	15033638	.	+	0	transcript_id "Ledus.S4G197200.t1"; gene_id "Ledus.S4G197200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10929.t1 is derived from g4547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	633609	634454	.	+	.	Ledus.S4G008500
Ledus.S4	AUGUSTUS	transcript	633609	634454	.	+	.	transcript_id "Ledus.S4G008500.t1"; gene_id "Ledus.S4G008500"
Ledus.S4	AUGUSTUS	start_codon	633609	633611	.	+	0	transcript_id "Ledus.S4G008500.t1"; gene_id "Ledus.S4G008500"
Ledus.S4	AUGUSTUS	CDS	633609	634454	0.28	+	0	transcript_id "Ledus.S4G008500.t1"; gene_id "Ledus.S4G008500"
Ledus.S4	AUGUSTUS	exon	633609	634454	.	+	.	transcript_id "Ledus.S4G008500.t1"; gene_id "Ledus.S4G008500"
Ledus.S4	AUGUSTUS	stop_codon	634455	634457	.	+	0	transcript_id "Ledus.S4G008500.t1"; gene_id "Ledus.S4G008500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6157.t1 is derived from g3600.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29314259	29317460	.	+	.	Ledus.S1G357800
Ledus.S1	AUGUSTUS	transcript	29314259	29317460	.	+	.	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	start_codon	29314259	29314261	.	+	0	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	CDS	29314259	29314529	1	+	0	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	exon	29314259	29314529	.	+	.	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	intron	29314530	29314616	.	+	.	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	CDS	29314617	29316619	0.72	+	2	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	exon	29314617	29316619	.	+	.	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	intron	29316620	29316800	.	+	.	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	CDS	29316801	29316850	0.7	+	0	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	exon	29316801	29316850	.	+	.	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	intron	29316851	29316928	.	+	.	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	CDS	29316929	29317460	0.77	+	1	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	exon	29316929	29317460	.	+	.	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	stop_codon	29317461	29317463	.	+	0	transcript_id "Ledus.S1G357800.t1"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	transcript	29314259	29317460	.	+	.	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	start_codon	29314259	29314261	.	+	0	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	CDS	29314259	29314481	0.8	+	0	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	exon	29314259	29314481	.	+	.	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	intron	29314482	29314622	.	+	.	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	CDS	29314623	29316619	0.58	+	2	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	exon	29314623	29316619	.	+	.	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	intron	29316620	29316800	.	+	.	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	CDS	29316801	29316850	0.69	+	0	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	exon	29316801	29316850	.	+	.	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	intron	29316851	29316928	.	+	.	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	CDS	29316929	29317460	0.74	+	1	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	exon	29316929	29317460	.	+	.	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
Ledus.S1	AUGUSTUS	stop_codon	29317461	29317463	.	+	0	transcript_id "Ledus.S1G357800.t2"; gene_id "Ledus.S1G357800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1876.t1 is derived from g8739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13140500	13142704	.	+	.	Ledus.S2G175800
Ledus.S2	AUGUSTUS	transcript	13140500	13142704	.	+	.	transcript_id "Ledus.S2G175800.t1"; gene_id "Ledus.S2G175800"
Ledus.S2	AUGUSTUS	start_codon	13140500	13140502	.	+	0	transcript_id "Ledus.S2G175800.t1"; gene_id "Ledus.S2G175800"
Ledus.S2	AUGUSTUS	CDS	13140500	13142704	0.66	+	0	transcript_id "Ledus.S2G175800.t1"; gene_id "Ledus.S2G175800"
Ledus.S2	AUGUSTUS	exon	13140500	13142704	.	+	.	transcript_id "Ledus.S2G175800.t1"; gene_id "Ledus.S2G175800"
Ledus.S2	AUGUSTUS	stop_codon	13142705	13142707	.	+	0	transcript_id "Ledus.S2G175800.t1"; gene_id "Ledus.S2G175800"
# This transcript jg5566.t2 is derived from g3005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5567.t1 is derived from g3006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25173897	25175078	.	+	.	Ledus.S1G298800
Ledus.S1	AUGUSTUS	transcript	25173897	25175078	.	+	.	transcript_id "Ledus.S1G298800.t1"; gene_id "Ledus.S1G298800"
Ledus.S1	AUGUSTUS	start_codon	25173897	25173899	.	+	0	transcript_id "Ledus.S1G298800.t1"; gene_id "Ledus.S1G298800"
Ledus.S1	AUGUSTUS	CDS	25173897	25175078	0.96	+	0	transcript_id "Ledus.S1G298800.t1"; gene_id "Ledus.S1G298800"
Ledus.S1	AUGUSTUS	exon	25173897	25175078	.	+	.	transcript_id "Ledus.S1G298800.t1"; gene_id "Ledus.S1G298800"
Ledus.S1	AUGUSTUS	stop_codon	25175079	25175081	.	+	0	transcript_id "Ledus.S1G298800.t1"; gene_id "Ledus.S1G298800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3315.t1 is derived from g750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7440097	7440820	.	+	.	Ledus.S1G073600
Ledus.S1	AUGUSTUS	transcript	7440097	7440820	.	+	.	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	start_codon	7440097	7440099	.	+	0	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	CDS	7440097	7440234	1	+	0	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	exon	7440097	7440234	.	+	.	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	intron	7440235	7440365	.	+	.	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	CDS	7440366	7440426	0.96	+	0	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	exon	7440366	7440426	.	+	.	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	intron	7440427	7440534	.	+	.	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	CDS	7440535	7440634	0.99	+	2	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	exon	7440535	7440634	.	+	.	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	intron	7440635	7440741	.	+	.	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	CDS	7440742	7440820	0.98	+	1	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	exon	7440742	7440820	.	+	.	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
Ledus.S1	AUGUSTUS	stop_codon	7440821	7440823	.	+	0	transcript_id "Ledus.S1G073600.t1"; gene_id "Ledus.S1G073600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg132.t1 is derived from g6993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	175797	176024	.	-	.	Ledus.S2G001400
Ledus.S2	AUGUSTUS	transcript	175797	176024	.	-	.	transcript_id "Ledus.S2G001400.t1"; gene_id "Ledus.S2G001400"
Ledus.S2	AUGUSTUS	stop_codon	175794	175796	.	-	0	transcript_id "Ledus.S2G001400.t1"; gene_id "Ledus.S2G001400"
Ledus.S2	AUGUSTUS	CDS	175797	176024	0.56	-	0	transcript_id "Ledus.S2G001400.t1"; gene_id "Ledus.S2G001400"
Ledus.S2	AUGUSTUS	exon	175797	176024	.	-	.	transcript_id "Ledus.S2G001400.t1"; gene_id "Ledus.S2G001400"
Ledus.S2	AUGUSTUS	start_codon	176022	176024	.	-	0	transcript_id "Ledus.S2G001400.t1"; gene_id "Ledus.S2G001400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11680.t1 is derived from g5299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5941242	5951661	.	+	.	Ledus.S4G083600
Ledus.S4	AUGUSTUS	transcript	5941242	5951661	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	start_codon	5941242	5941244	.	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5941242	5941421	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5941242	5941421	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5941422	5941685	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5941686	5941859	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5941686	5941859	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5941860	5941998	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5941999	5942094	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5941999	5942094	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5942095	5942306	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5942307	5942376	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5942307	5942376	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5942377	5942449	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5942450	5942586	1	+	2	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5942450	5942586	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5942587	5942742	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5942743	5942883	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5942743	5942883	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5942884	5942976	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5942977	5943134	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5942977	5943134	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5943135	5943262	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5943263	5943431	1	+	1	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5943263	5943431	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5943432	5943579	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5943580	5943678	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5943580	5943678	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5943679	5943754	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5943755	5943832	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5943755	5943832	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5943833	5944007	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5944008	5944067	0.99	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5944008	5944067	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5944068	5944184	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5944185	5944342	0.99	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5944185	5944342	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5944343	5944433	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5944434	5944629	1	+	1	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5944434	5944629	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5944630	5944800	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5944801	5944923	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5944801	5944923	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5944924	5945058	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5945059	5945144	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5945059	5945144	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5945145	5945230	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5945231	5945341	1	+	1	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5945231	5945341	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5945342	5945472	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5945473	5945547	1	+	1	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5945473	5945547	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5945548	5945643	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5945644	5945732	0.81	+	1	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5945644	5945732	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5945733	5945841	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5945842	5945990	0.59	+	2	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5945842	5945990	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5945991	5946102	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5946103	5946255	0.99	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5946103	5946255	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5946256	5946385	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5946386	5946508	0.99	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5946386	5946508	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5946509	5946701	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5946702	5946809	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5946702	5946809	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5946810	5946990	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5946991	5947095	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5946991	5947095	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5947096	5947246	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5947247	5947360	0.94	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5947247	5947360	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5947361	5947481	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5947482	5947678	0.97	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5947482	5947678	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5947679	5947804	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5947805	5948306	0.87	+	1	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5947805	5948306	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5948307	5948433	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5948434	5948541	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5948434	5948541	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5948542	5948636	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5948637	5948695	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5948637	5948695	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5948696	5948815	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5948816	5949224	0.95	+	1	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5948816	5949224	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5949225	5949329	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5949330	5950940	0.27	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5949330	5950940	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5950941	5951017	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5951018	5951225	1	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5951018	5951225	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5951226	5951359	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5951360	5951418	0.9	+	2	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5951360	5951418	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5951419	5951497	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5951498	5951518	0.89	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5951498	5951518	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	intron	5951519	5951616	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	CDS	5951617	5951661	0.89	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	exon	5951617	5951661	.	+	.	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
Ledus.S4	AUGUSTUS	stop_codon	5951662	5951664	.	+	0	transcript_id "Ledus.S4G083600.t1"; gene_id "Ledus.S4G083600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7399.t1 is derived from g12070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2091519	2095028	.	+	.	Ledus.S5G017700
Ledus.S5	AUGUSTUS	transcript	2091519	2095028	.	+	.	transcript_id "Ledus.S5G017700.t1"; gene_id "Ledus.S5G017700"
Ledus.S5	AUGUSTUS	start_codon	2091519	2091521	.	+	0	transcript_id "Ledus.S5G017700.t1"; gene_id "Ledus.S5G017700"
Ledus.S5	AUGUSTUS	CDS	2091519	2092718	0.93	+	0	transcript_id "Ledus.S5G017700.t1"; gene_id "Ledus.S5G017700"
Ledus.S5	AUGUSTUS	exon	2091519	2092718	.	+	.	transcript_id "Ledus.S5G017700.t1"; gene_id "Ledus.S5G017700"
Ledus.S5	AUGUSTUS	intron	2092719	2092828	.	+	.	transcript_id "Ledus.S5G017700.t1"; gene_id "Ledus.S5G017700"
Ledus.S5	AUGUSTUS	CDS	2092829	2093138	1	+	0	transcript_id "Ledus.S5G017700.t1"; gene_id "Ledus.S5G017700"
Ledus.S5	AUGUSTUS	exon	2092829	2093138	.	+	.	transcript_id "Ledus.S5G017700.t1"; gene_id "Ledus.S5G017700"
Ledus.S5	AUGUSTUS	intron	2093139	2093466	.	+	.	transcript_id "Ledus.S5G017700.t1"; gene_id "Ledus.S5G017700"
Ledus.S5	AUGUSTUS	CDS	2093467	2095028	0.55	+	2	transcript_id "Ledus.S5G017700.t1"; gene_id "Ledus.S5G017700"
Ledus.S5	AUGUSTUS	exon	2093467	2095028	.	+	.	transcript_id "Ledus.S5G017700.t1"; gene_id "Ledus.S5G017700"
Ledus.S5	AUGUSTUS	stop_codon	2095029	2095031	.	+	0	transcript_id "Ledus.S5G017700.t1"; gene_id "Ledus.S5G017700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4222.t1 is derived from g1658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15632441	15633296	.	-	.	Ledus.S1G164300
Ledus.S1	AUGUSTUS	transcript	15632441	15633296	.	-	.	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	stop_codon	15632438	15632440	.	-	0	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	CDS	15632441	15632563	0.53	-	0	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	exon	15632441	15632563	.	-	.	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	intron	15632564	15632851	.	-	.	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	CDS	15632852	15632911	0.49	-	0	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	exon	15632852	15632911	.	-	.	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	intron	15632912	15633058	.	-	.	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	CDS	15633059	15633066	0.49	-	2	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	exon	15633059	15633066	.	-	.	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	intron	15633067	15633163	.	-	.	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	CDS	15633164	15633296	1	-	0	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	exon	15633164	15633296	.	-	.	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
Ledus.S1	AUGUSTUS	start_codon	15633294	15633296	.	-	0	transcript_id "Ledus.S1G164300.t1"; gene_id "Ledus.S1G164300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7367.t1 is derived from g12038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1547902	1548102	.	+	.	Ledus.S5G014500
Ledus.S5	AUGUSTUS	transcript	1547902	1548102	.	+	.	transcript_id "Ledus.S5G014500.t1"; gene_id "Ledus.S5G014500"
Ledus.S5	AUGUSTUS	start_codon	1547902	1547904	.	+	0	transcript_id "Ledus.S5G014500.t1"; gene_id "Ledus.S5G014500"
Ledus.S5	AUGUSTUS	CDS	1547902	1548102	0.91	+	0	transcript_id "Ledus.S5G014500.t1"; gene_id "Ledus.S5G014500"
Ledus.S5	AUGUSTUS	exon	1547902	1548102	.	+	.	transcript_id "Ledus.S5G014500.t1"; gene_id "Ledus.S5G014500"
Ledus.S5	AUGUSTUS	stop_codon	1548103	1548105	.	+	0	transcript_id "Ledus.S5G014500.t1"; gene_id "Ledus.S5G014500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3867.t1 is derived from g1303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13261108	13267742	.	+	.	Ledus.S1G128800
Ledus.S1	AUGUSTUS	transcript	13261108	13267742	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	start_codon	13261108	13261110	.	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13261108	13261142	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13261108	13261142	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13261143	13261284	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13261285	13261462	0.99	+	1	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13261285	13261462	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13261463	13261593	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13261594	13261747	0.86	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13261594	13261747	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13261748	13261859	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13261860	13261933	1	+	2	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13261860	13261933	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13261934	13262120	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13262121	13262270	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13262121	13262270	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13262271	13262358	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13262359	13262463	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13262359	13262463	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13262464	13262650	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13262651	13262796	0.97	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13262651	13262796	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13262797	13262899	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13262900	13263011	1	+	1	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13262900	13263011	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13263012	13263102	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13263103	13263258	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13263103	13263258	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13263259	13263424	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13263425	13263546	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13263425	13263546	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13263547	13263710	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13263711	13263855	1	+	1	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13263711	13263855	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13263856	13263946	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13263947	13264012	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13263947	13264012	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13264013	13264107	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13264108	13264239	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13264108	13264239	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13264240	13264329	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13264330	13264428	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13264330	13264428	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13264429	13264511	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13264512	13264677	0.94	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13264512	13264677	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13264678	13264790	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13264791	13264936	0.94	+	2	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13264791	13264936	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13264937	13265026	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13265027	13265090	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13265027	13265090	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13265091	13265330	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13265331	13265455	0.93	+	2	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13265331	13265455	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13265456	13265606	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13265607	13265660	0.96	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13265607	13265660	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13265661	13265756	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13265757	13265829	0.58	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13265757	13265829	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13265830	13265941	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13265942	13266045	0.59	+	2	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13265942	13266045	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13266046	13266222	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13266223	13266339	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13266223	13266339	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13266340	13266443	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13266444	13266521	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13266444	13266521	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13266522	13266620	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13266621	13266720	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13266621	13266720	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13266721	13266828	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13266829	13266883	0.99	+	2	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13266829	13266883	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13266884	13266997	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13266998	13267046	0.99	+	1	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13266998	13267046	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13267047	13267130	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13267131	13267218	1	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13267131	13267218	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13267219	13267354	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13267355	13267427	1	+	2	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13267355	13267427	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13267428	13267514	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13267515	13267618	1	+	1	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13267515	13267618	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13267619	13267698	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13267699	13267742	1	+	2	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13267699	13267742	.	+	.	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	stop_codon	13267743	13267745	.	+	0	transcript_id "Ledus.S1G128800.t1"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	transcript	13261108	13267742	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	start_codon	13261108	13261110	.	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13261108	13261142	1	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13261108	13261142	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13261143	13261284	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13261285	13261462	1	+	1	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13261285	13261462	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13261463	13261593	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13261594	13261747	0.77	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13261594	13261747	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13261748	13261859	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13261860	13261933	1	+	2	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13261860	13261933	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13261934	13262120	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13262121	13262270	1	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13262121	13262270	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13262271	13262358	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13262359	13262463	1	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13262359	13262463	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13262464	13262650	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13262651	13262796	0.97	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13262651	13262796	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13262797	13262899	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13262900	13263011	1	+	1	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13262900	13263011	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13263012	13263102	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13263103	13263258	1	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13263103	13263258	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13263259	13263424	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13263425	13263546	1	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13263425	13263546	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13263547	13263710	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13263711	13263855	1	+	1	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13263711	13263855	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13263856	13263946	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13263947	13264012	1	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13263947	13264012	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13264013	13264107	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13264108	13264239	1	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13264108	13264239	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13264240	13264329	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13264330	13264428	1	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13264330	13264428	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13264429	13264511	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13264512	13264677	0.98	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13264512	13264677	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13264678	13264790	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13264791	13264936	0.98	+	2	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13264791	13264936	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13264937	13265026	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13265027	13265090	1	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13265027	13265090	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13265091	13265330	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13265331	13265455	0.91	+	2	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13265331	13265455	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13265456	13265606	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13265607	13265660	0.99	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13265607	13265660	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13265661	13265756	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13265757	13265829	0.58	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13265757	13265829	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13265830	13265941	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13265942	13266045	0.58	+	2	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13265942	13266045	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13266046	13266222	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13266223	13266339	1	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13266223	13266339	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13266340	13266443	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13266444	13266521	0.99	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13266444	13266521	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13266522	13266620	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13266621	13266720	1	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13266621	13266720	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13266721	13266828	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13266829	13266883	0.98	+	2	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13266829	13266883	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13266884	13266997	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13266998	13267046	0.98	+	1	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13266998	13267046	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13267047	13267130	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13267131	13267185	0.62	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13267131	13267185	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13267186	13267262	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13267263	13267274	0.82	+	2	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13267263	13267274	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13267275	13267354	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13267355	13267427	1	+	2	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13267355	13267427	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13267428	13267514	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13267515	13267618	1	+	1	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13267515	13267618	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	intron	13267619	13267698	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	CDS	13267699	13267742	1	+	2	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	exon	13267699	13267742	.	+	.	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
Ledus.S1	AUGUSTUS	stop_codon	13267743	13267745	.	+	0	transcript_id "Ledus.S1G128800.t2"; gene_id "Ledus.S1G128800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5644.t1 is derived from g3083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25555486	25556343	.	-	.	Ledus.S1G306500
Ledus.S1	AUGUSTUS	transcript	25555486	25555890	.	-	.	transcript_id "Ledus.S1G306500.t1"; gene_id "Ledus.S1G306500"
Ledus.S1	AUGUSTUS	stop_codon	25555483	25555485	.	-	0	transcript_id "Ledus.S1G306500.t1"; gene_id "Ledus.S1G306500"
Ledus.S1	AUGUSTUS	CDS	25555486	25555890	0.99	-	0	transcript_id "Ledus.S1G306500.t1"; gene_id "Ledus.S1G306500"
Ledus.S1	AUGUSTUS	exon	25555486	25555890	.	-	.	transcript_id "Ledus.S1G306500.t1"; gene_id "Ledus.S1G306500"
Ledus.S1	AUGUSTUS	start_codon	25555888	25555890	.	-	0	transcript_id "Ledus.S1G306500.t1"; gene_id "Ledus.S1G306500"
Ledus.S1	AUGUSTUS	transcript	25555486	25556343	.	-	.	transcript_id "Ledus.S1G306500.t2"; gene_id "Ledus.S1G306500"
Ledus.S1	AUGUSTUS	stop_codon	25555483	25555485	.	-	0	transcript_id "Ledus.S1G306500.t2"; gene_id "Ledus.S1G306500"
Ledus.S1	AUGUSTUS	CDS	25555486	25556343	0.71	-	0	transcript_id "Ledus.S1G306500.t2"; gene_id "Ledus.S1G306500"
Ledus.S1	AUGUSTUS	exon	25555486	25556343	.	-	.	transcript_id "Ledus.S1G306500.t2"; gene_id "Ledus.S1G306500"
Ledus.S1	AUGUSTUS	start_codon	25556341	25556343	.	-	0	transcript_id "Ledus.S1G306500.t2"; gene_id "Ledus.S1G306500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4066.t1 is derived from g1502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14420607	14422916	.	-	.	Ledus.S1G148700
Ledus.S1	AUGUSTUS	transcript	14420607	14422916	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	stop_codon	14420604	14420606	.	-	0	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	CDS	14420607	14420724	0.96	-	1	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	exon	14420607	14420724	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	intron	14420725	14420791	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	CDS	14420792	14421006	1	-	0	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	exon	14420792	14421006	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	intron	14421007	14421084	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	CDS	14421085	14421166	1	-	1	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	exon	14421085	14421166	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	intron	14421167	14421232	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	CDS	14421233	14421478	1	-	1	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	exon	14421233	14421478	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	intron	14421479	14421558	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	CDS	14421559	14421692	0.7	-	0	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	exon	14421559	14421692	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	intron	14421693	14421850	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	CDS	14421851	14421908	0.8	-	1	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	exon	14421851	14421908	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	intron	14421909	14422003	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	CDS	14422004	14422159	1	-	1	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	exon	14422004	14422159	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	intron	14422160	14422254	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	CDS	14422255	14422325	1	-	0	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	exon	14422255	14422325	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	intron	14422326	14422415	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	CDS	14422416	14422608	1	-	1	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	exon	14422416	14422608	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	intron	14422609	14422680	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	CDS	14422681	14422756	1	-	2	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	exon	14422681	14422756	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	intron	14422757	14422822	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	CDS	14422823	14422916	0.91	-	0	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	exon	14422823	14422916	.	-	.	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
Ledus.S1	AUGUSTUS	start_codon	14422914	14422916	.	-	0	transcript_id "Ledus.S1G148700.t1"; gene_id "Ledus.S1G148700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg983.t1 is derived from g7844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6469135	6472007	.	-	.	Ledus.S2G086500
Ledus.S2	AUGUSTUS	transcript	6469135	6472007	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	stop_codon	6469132	6469134	.	-	0	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6469135	6469267	1	-	1	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6469135	6469267	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6469268	6469371	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6469372	6469528	1	-	2	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6469372	6469528	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6469529	6469628	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6469629	6469720	1	-	1	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6469629	6469720	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6469721	6469876	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6469877	6469941	1	-	0	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6469877	6469941	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6469942	6470146	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6470147	6470212	0.98	-	0	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6470147	6470212	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6470213	6470322	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6470323	6470434	0.72	-	1	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6470323	6470434	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6470435	6470559	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6470560	6470653	0.33	-	2	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6470560	6470653	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6470654	6470725	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6470726	6470732	0.4	-	0	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6470726	6470732	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6470733	6470841	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6470842	6471000	0.97	-	0	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6470842	6471000	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6471001	6471094	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6471095	6471182	1	-	1	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6471095	6471182	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6471183	6471323	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6471324	6471405	1	-	2	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6471324	6471405	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6471406	6471528	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6471529	6471646	1	-	0	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6471529	6471646	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6471647	6471729	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6471730	6471795	1	-	0	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6471730	6471795	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	intron	6471796	6471887	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	CDS	6471888	6472007	0.83	-	0	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	exon	6471888	6472007	.	-	.	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
Ledus.S2	AUGUSTUS	start_codon	6472005	6472007	.	-	0	transcript_id "Ledus.S2G086500.t1"; gene_id "Ledus.S2G086500"
# This transcript jg7019.t2 is derived from g6550.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7020.t1 is derived from g6551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	833666	836521	.	+	.	Ledus.C7G008100
Ledus.C7	AUGUSTUS	transcript	833666	836521	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	start_codon	833666	833668	.	+	0	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	CDS	833666	834197	0.72	+	0	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	exon	833666	834197	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	intron	834198	834285	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	CDS	834286	834386	0.98	+	2	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	exon	834286	834386	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	intron	834387	834483	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	CDS	834484	834683	1	+	0	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	exon	834484	834683	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	intron	834684	834775	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	CDS	834776	834876	1	+	1	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	exon	834776	834876	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	intron	834877	834964	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	CDS	834965	835172	1	+	2	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	exon	834965	835172	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	intron	835173	835288	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	CDS	835289	835450	0.97	+	1	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	exon	835289	835450	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	intron	835451	835528	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	CDS	835529	835610	1	+	1	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	exon	835529	835610	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	intron	835611	835678	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	CDS	835679	835945	0.99	+	0	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	exon	835679	835945	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	intron	835946	836031	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	CDS	836032	836192	1	+	0	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	exon	836032	836192	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	intron	836193	836361	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	CDS	836362	836521	0.99	+	1	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	exon	836362	836521	.	+	.	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
Ledus.C7	AUGUSTUS	stop_codon	836522	836524	.	+	0	transcript_id "Ledus.C7G008100.t1"; gene_id "Ledus.C7G008100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3091.t1 is derived from g526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5815650	5816053	.	+	.	Ledus.S1G051200
Ledus.S1	AUGUSTUS	transcript	5815650	5816053	.	+	.	transcript_id "Ledus.S1G051200.t1"; gene_id "Ledus.S1G051200"
Ledus.S1	AUGUSTUS	start_codon	5815650	5815652	.	+	0	transcript_id "Ledus.S1G051200.t1"; gene_id "Ledus.S1G051200"
Ledus.S1	AUGUSTUS	CDS	5815650	5815652	0.51	+	0	transcript_id "Ledus.S1G051200.t1"; gene_id "Ledus.S1G051200"
Ledus.S1	AUGUSTUS	exon	5815650	5815652	.	+	.	transcript_id "Ledus.S1G051200.t1"; gene_id "Ledus.S1G051200"
Ledus.S1	AUGUSTUS	intron	5815653	5815744	.	+	.	transcript_id "Ledus.S1G051200.t1"; gene_id "Ledus.S1G051200"
Ledus.S1	AUGUSTUS	CDS	5815745	5816053	0.61	+	0	transcript_id "Ledus.S1G051200.t1"; gene_id "Ledus.S1G051200"
Ledus.S1	AUGUSTUS	exon	5815745	5816053	.	+	.	transcript_id "Ledus.S1G051200.t1"; gene_id "Ledus.S1G051200"
Ledus.S1	AUGUSTUS	stop_codon	5816054	5816056	.	+	0	transcript_id "Ledus.S1G051200.t1"; gene_id "Ledus.S1G051200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7806.t1 is derived from g12477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6888717	6889031	.	-	.	Ledus.S5G058400
Ledus.S5	AUGUSTUS	transcript	6888717	6889031	.	-	.	transcript_id "Ledus.S5G058400.t1"; gene_id "Ledus.S5G058400"
Ledus.S5	AUGUSTUS	stop_codon	6888714	6888716	.	-	0	transcript_id "Ledus.S5G058400.t1"; gene_id "Ledus.S5G058400"
Ledus.S5	AUGUSTUS	CDS	6888717	6889031	0.94	-	0	transcript_id "Ledus.S5G058400.t1"; gene_id "Ledus.S5G058400"
Ledus.S5	AUGUSTUS	exon	6888717	6889031	.	-	.	transcript_id "Ledus.S5G058400.t1"; gene_id "Ledus.S5G058400"
Ledus.S5	AUGUSTUS	start_codon	6889029	6889031	.	-	0	transcript_id "Ledus.S5G058400.t1"; gene_id "Ledus.S5G058400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11242.t1 is derived from g4860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2876015	2876762	.	-	.	Ledus.S4G039800
Ledus.S4	AUGUSTUS	transcript	2876015	2876762	.	-	.	transcript_id "Ledus.S4G039800.t1"; gene_id "Ledus.S4G039800"
Ledus.S4	AUGUSTUS	stop_codon	2876012	2876014	.	-	0	transcript_id "Ledus.S4G039800.t1"; gene_id "Ledus.S4G039800"
Ledus.S4	AUGUSTUS	CDS	2876015	2876299	0.77	-	0	transcript_id "Ledus.S4G039800.t1"; gene_id "Ledus.S4G039800"
Ledus.S4	AUGUSTUS	exon	2876015	2876299	.	-	.	transcript_id "Ledus.S4G039800.t1"; gene_id "Ledus.S4G039800"
Ledus.S4	AUGUSTUS	intron	2876300	2876648	.	-	.	transcript_id "Ledus.S4G039800.t1"; gene_id "Ledus.S4G039800"
Ledus.S4	AUGUSTUS	CDS	2876649	2876762	0.77	-	0	transcript_id "Ledus.S4G039800.t1"; gene_id "Ledus.S4G039800"
Ledus.S4	AUGUSTUS	exon	2876649	2876762	.	-	.	transcript_id "Ledus.S4G039800.t1"; gene_id "Ledus.S4G039800"
Ledus.S4	AUGUSTUS	start_codon	2876760	2876762	.	-	0	transcript_id "Ledus.S4G039800.t1"; gene_id "Ledus.S4G039800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3656.t1 is derived from g1092.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10447626	10449734	.	-	.	Ledus.S1G107700
Ledus.S1	AUGUSTUS	transcript	10447626	10449734	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	stop_codon	10447623	10447625	.	-	0	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10447626	10448048	0.56	-	0	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10447626	10448048	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10448049	10448137	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10448138	10448171	1	-	1	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10448138	10448171	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10448172	10448460	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10448461	10448510	1	-	0	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10448461	10448510	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10448511	10448615	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10448616	10448639	0.92	-	0	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10448616	10448639	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10448640	10448745	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10448746	10448772	1	-	0	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10448746	10448772	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10448773	10448891	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10448892	10448959	0.72	-	2	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10448892	10448959	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10448960	10449067	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10449068	10449239	0.67	-	0	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10449068	10449239	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10449240	10449337	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10449338	10449526	1	-	0	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10449338	10449526	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10449527	10449611	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10449612	10449734	0.89	-	0	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10449612	10449734	.	-	.	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	start_codon	10449732	10449734	.	-	0	transcript_id "Ledus.S1G107700.t1"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	transcript	10447626	10449734	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	stop_codon	10447623	10447625	.	-	0	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10447626	10448010	0.93	-	1	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10447626	10448010	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10448011	10448137	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10448138	10448171	0.95	-	2	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10448138	10448171	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10448172	10448331	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10448332	10448392	0.77	-	0	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10448332	10448392	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10448393	10448615	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10448616	10448639	0.9	-	0	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10448616	10448639	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10448640	10448745	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10448746	10448772	1	-	0	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10448746	10448772	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10448773	10448891	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10448892	10448959	0.57	-	2	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10448892	10448959	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10448960	10449067	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10449068	10449239	0.56	-	0	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10449068	10449239	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10449240	10449337	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10449338	10449526	1	-	0	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10449338	10449526	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	intron	10449527	10449611	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	CDS	10449612	10449734	0.87	-	0	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	exon	10449612	10449734	.	-	.	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
Ledus.S1	AUGUSTUS	start_codon	10449732	10449734	.	-	0	transcript_id "Ledus.S1G107700.t2"; gene_id "Ledus.S1G107700"
# This transcript jg37.t2 is derived from g9549.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg38.t1 is derived from g9550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C12	AUGUSTUS	gene	184835	188098	.	-	.	Ledus.C12G000900
Ledus.C12	AUGUSTUS	transcript	184835	188098	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	stop_codon	184832	184834	.	-	0	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	184835	184895	1	-	1	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	184835	184895	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	184896	184976	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	184977	185093	1	-	1	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	184977	185093	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	185094	185172	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	185173	185231	1	-	0	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	185173	185231	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	185232	185326	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	185327	185476	1	-	0	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	185327	185476	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	185477	185576	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	185577	185668	1	-	2	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	185577	185668	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	185669	185815	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	185816	185903	1	-	0	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	185816	185903	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	185904	185989	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	185990	186160	1	-	0	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	185990	186160	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	186161	186443	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	186444	186503	1	-	0	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	186444	186503	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	186504	186685	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	186686	186814	0.99	-	0	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	186686	186814	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	186815	186922	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	186923	187021	0.99	-	0	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	186923	187021	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	187022	187280	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	187281	187388	1	-	0	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	187281	187388	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	187389	187533	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	187534	187570	0.99	-	1	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	187534	187570	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	187571	187724	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	187725	187778	1	-	1	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	187725	187778	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	intron	187779	188000	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	CDS	188001	188098	0.98	-	0	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	exon	188001	188098	.	-	.	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
Ledus.C12	AUGUSTUS	start_codon	188096	188098	.	-	0	transcript_id "Ledus.C12G000900.t1"; gene_id "Ledus.C12G000900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1182.t1 is derived from g8043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8274250	8276319	.	+	.	Ledus.S2G106400
Ledus.S2	AUGUSTUS	transcript	8274250	8276319	.	+	.	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	start_codon	8274250	8274252	.	+	0	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	CDS	8274250	8274651	1	+	0	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	exon	8274250	8274651	.	+	.	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	intron	8274652	8274734	.	+	.	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	CDS	8274735	8275446	1	+	0	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	exon	8274735	8275446	.	+	.	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	intron	8275447	8275537	.	+	.	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	CDS	8275538	8275928	1	+	2	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	exon	8275538	8275928	.	+	.	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	intron	8275929	8276021	.	+	.	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	CDS	8276022	8276319	0.69	+	1	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	exon	8276022	8276319	.	+	.	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
Ledus.S2	AUGUSTUS	stop_codon	8276320	8276322	.	+	0	transcript_id "Ledus.S2G106400.t1"; gene_id "Ledus.S2G106400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3955.t1 is derived from g1391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13753427	13754683	.	+	.	Ledus.S1G137600
Ledus.S1	AUGUSTUS	transcript	13753427	13754683	.	+	.	transcript_id "Ledus.S1G137600.t1"; gene_id "Ledus.S1G137600"
Ledus.S1	AUGUSTUS	start_codon	13753427	13753429	.	+	0	transcript_id "Ledus.S1G137600.t1"; gene_id "Ledus.S1G137600"
Ledus.S1	AUGUSTUS	CDS	13753427	13754047	0.32	+	0	transcript_id "Ledus.S1G137600.t1"; gene_id "Ledus.S1G137600"
Ledus.S1	AUGUSTUS	exon	13753427	13754047	.	+	.	transcript_id "Ledus.S1G137600.t1"; gene_id "Ledus.S1G137600"
Ledus.S1	AUGUSTUS	intron	13754048	13754122	.	+	.	transcript_id "Ledus.S1G137600.t1"; gene_id "Ledus.S1G137600"
Ledus.S1	AUGUSTUS	CDS	13754123	13754683	1	+	0	transcript_id "Ledus.S1G137600.t1"; gene_id "Ledus.S1G137600"
Ledus.S1	AUGUSTUS	exon	13754123	13754683	.	+	.	transcript_id "Ledus.S1G137600.t1"; gene_id "Ledus.S1G137600"
Ledus.S1	AUGUSTUS	stop_codon	13754684	13754686	.	+	0	transcript_id "Ledus.S1G137600.t1"; gene_id "Ledus.S1G137600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6589.t1 is derived from g4032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32537213	32540553	.	+	.	Ledus.S1G401000
Ledus.S1	AUGUSTUS	transcript	32537213	32540553	.	+	.	transcript_id "Ledus.S1G401000.t1"; gene_id "Ledus.S1G401000"
Ledus.S1	AUGUSTUS	start_codon	32537213	32537215	.	+	0	transcript_id "Ledus.S1G401000.t1"; gene_id "Ledus.S1G401000"
Ledus.S1	AUGUSTUS	CDS	32537213	32537225	0.03	+	0	transcript_id "Ledus.S1G401000.t1"; gene_id "Ledus.S1G401000"
Ledus.S1	AUGUSTUS	exon	32537213	32537225	.	+	.	transcript_id "Ledus.S1G401000.t1"; gene_id "Ledus.S1G401000"
Ledus.S1	AUGUSTUS	intron	32537226	32538201	.	+	.	transcript_id "Ledus.S1G401000.t1"; gene_id "Ledus.S1G401000"
Ledus.S1	AUGUSTUS	CDS	32538202	32538286	0.78	+	2	transcript_id "Ledus.S1G401000.t1"; gene_id "Ledus.S1G401000"
Ledus.S1	AUGUSTUS	exon	32538202	32538286	.	+	.	transcript_id "Ledus.S1G401000.t1"; gene_id "Ledus.S1G401000"
Ledus.S1	AUGUSTUS	intron	32538287	32540522	.	+	.	transcript_id "Ledus.S1G401000.t1"; gene_id "Ledus.S1G401000"
Ledus.S1	AUGUSTUS	CDS	32540523	32540553	0.01	+	1	transcript_id "Ledus.S1G401000.t1"; gene_id "Ledus.S1G401000"
Ledus.S1	AUGUSTUS	exon	32540523	32540553	.	+	.	transcript_id "Ledus.S1G401000.t1"; gene_id "Ledus.S1G401000"
Ledus.S1	AUGUSTUS	stop_codon	32540554	32540556	.	+	0	transcript_id "Ledus.S1G401000.t1"; gene_id "Ledus.S1G401000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg532.t1 is derived from g7393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3072640	3072912	.	+	.	Ledus.S2G041400
Ledus.S2	AUGUSTUS	transcript	3072640	3072912	.	+	.	transcript_id "Ledus.S2G041400.t1"; gene_id "Ledus.S2G041400"
Ledus.S2	AUGUSTUS	start_codon	3072640	3072642	.	+	0	transcript_id "Ledus.S2G041400.t1"; gene_id "Ledus.S2G041400"
Ledus.S2	AUGUSTUS	CDS	3072640	3072912	0.4	+	0	transcript_id "Ledus.S2G041400.t1"; gene_id "Ledus.S2G041400"
Ledus.S2	AUGUSTUS	exon	3072640	3072912	.	+	.	transcript_id "Ledus.S2G041400.t1"; gene_id "Ledus.S2G041400"
Ledus.S2	AUGUSTUS	stop_codon	3072913	3072915	.	+	0	transcript_id "Ledus.S2G041400.t1"; gene_id "Ledus.S2G041400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10241.t1 is derived from g11271.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13734365	13735809	.	-	.	Ledus.S3G171800
Ledus.S3	AUGUSTUS	transcript	13734365	13735809	.	-	.	transcript_id "Ledus.S3G171800.t1"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	stop_codon	13734362	13734364	.	-	0	transcript_id "Ledus.S3G171800.t1"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	CDS	13734365	13734990	0.97	-	2	transcript_id "Ledus.S3G171800.t1"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	exon	13734365	13734990	.	-	.	transcript_id "Ledus.S3G171800.t1"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	intron	13734991	13735393	.	-	.	transcript_id "Ledus.S3G171800.t1"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	CDS	13735394	13735594	1	-	2	transcript_id "Ledus.S3G171800.t1"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	exon	13735394	13735594	.	-	.	transcript_id "Ledus.S3G171800.t1"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	intron	13735595	13735679	.	-	.	transcript_id "Ledus.S3G171800.t1"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	CDS	13735680	13735809	0.99	-	0	transcript_id "Ledus.S3G171800.t1"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	exon	13735680	13735809	.	-	.	transcript_id "Ledus.S3G171800.t1"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	start_codon	13735807	13735809	.	-	0	transcript_id "Ledus.S3G171800.t1"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	transcript	13734365	13735809	.	-	.	transcript_id "Ledus.S3G171800.t2"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	stop_codon	13734362	13734364	.	-	0	transcript_id "Ledus.S3G171800.t2"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	CDS	13734365	13734990	0.89	-	2	transcript_id "Ledus.S3G171800.t2"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	exon	13734365	13734990	.	-	.	transcript_id "Ledus.S3G171800.t2"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	intron	13734991	13735393	.	-	.	transcript_id "Ledus.S3G171800.t2"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	CDS	13735394	13735606	1	-	2	transcript_id "Ledus.S3G171800.t2"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	exon	13735394	13735606	.	-	.	transcript_id "Ledus.S3G171800.t2"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	intron	13735607	13735679	.	-	.	transcript_id "Ledus.S3G171800.t2"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	CDS	13735680	13735809	0.97	-	0	transcript_id "Ledus.S3G171800.t2"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	exon	13735680	13735809	.	-	.	transcript_id "Ledus.S3G171800.t2"; gene_id "Ledus.S3G171800"
Ledus.S3	AUGUSTUS	start_codon	13735807	13735809	.	-	0	transcript_id "Ledus.S3G171800.t2"; gene_id "Ledus.S3G171800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5494.t1 is derived from g2933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24547556	24548494	.	+	.	Ledus.S1G291500
Ledus.S1	AUGUSTUS	transcript	24547556	24548494	.	+	.	transcript_id "Ledus.S1G291500.t1"; gene_id "Ledus.S1G291500"
Ledus.S1	AUGUSTUS	start_codon	24547556	24547558	.	+	0	transcript_id "Ledus.S1G291500.t1"; gene_id "Ledus.S1G291500"
Ledus.S1	AUGUSTUS	CDS	24547556	24548494	0.98	+	0	transcript_id "Ledus.S1G291500.t1"; gene_id "Ledus.S1G291500"
Ledus.S1	AUGUSTUS	exon	24547556	24548494	.	+	.	transcript_id "Ledus.S1G291500.t1"; gene_id "Ledus.S1G291500"
Ledus.S1	AUGUSTUS	stop_codon	24548495	24548497	.	+	0	transcript_id "Ledus.S1G291500.t1"; gene_id "Ledus.S1G291500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2718.t1 is derived from g151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2512243	2514060	.	+	.	Ledus.S1G013900
Ledus.S1	AUGUSTUS	transcript	2512243	2514060	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	start_codon	2512243	2512245	.	+	0	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	CDS	2512243	2512365	0.94	+	0	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	exon	2512243	2512365	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	intron	2512366	2512577	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	CDS	2512578	2512658	1	+	0	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	exon	2512578	2512658	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	intron	2512659	2512780	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	CDS	2512781	2512869	1	+	0	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	exon	2512781	2512869	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	intron	2512870	2512967	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	CDS	2512968	2513042	1	+	1	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	exon	2512968	2513042	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	intron	2513043	2513168	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	CDS	2513169	2513230	1	+	1	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	exon	2513169	2513230	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	intron	2513231	2513405	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	CDS	2513406	2513474	1	+	2	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	exon	2513406	2513474	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	intron	2513475	2513568	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	CDS	2513569	2513787	0.8	+	2	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	exon	2513569	2513787	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	intron	2513788	2513968	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	CDS	2513969	2514060	0.78	+	2	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	exon	2513969	2514060	.	+	.	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
Ledus.S1	AUGUSTUS	stop_codon	2514061	2514063	.	+	0	transcript_id "Ledus.S1G013900.t1"; gene_id "Ledus.S1G013900"
# This transcript jg10163.t2 is derived from g11193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10164.t1 is derived from g11194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13419802	13421760	.	+	.	Ledus.S3G164100
Ledus.S3	AUGUSTUS	transcript	13419802	13421760	.	+	.	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	start_codon	13419802	13419804	.	+	0	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	CDS	13419802	13420373	1	+	0	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	exon	13419802	13420373	.	+	.	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	intron	13420374	13420451	.	+	.	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	CDS	13420452	13420992	1	+	1	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	exon	13420452	13420992	.	+	.	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	intron	13420993	13421094	.	+	.	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	CDS	13421095	13421415	1	+	0	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	exon	13421095	13421415	.	+	.	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	intron	13421416	13421514	.	+	.	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	CDS	13421515	13421760	1	+	0	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	exon	13421515	13421760	.	+	.	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
Ledus.S3	AUGUSTUS	stop_codon	13421761	13421763	.	+	0	transcript_id "Ledus.S3G164100.t1"; gene_id "Ledus.S3G164100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5700.t1 is derived from g3139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26013898	26016779	.	-	.	Ledus.S1G312100
Ledus.S1	AUGUSTUS	transcript	26013898	26016779	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	stop_codon	26013895	26013897	.	-	0	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	CDS	26013898	26013989	0.99	-	2	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	exon	26013898	26013989	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	intron	26013990	26014228	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	CDS	26014229	26014316	0.99	-	0	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	exon	26014229	26014316	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	intron	26014317	26014540	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	CDS	26014541	26014747	0.98	-	0	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	exon	26014541	26014747	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	intron	26014748	26014825	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	CDS	26014826	26015048	1	-	1	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	exon	26014826	26015048	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	intron	26015049	26015139	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	CDS	26015140	26015204	1	-	0	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	exon	26015140	26015204	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	intron	26015205	26015286	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	CDS	26015287	26015405	1	-	2	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	exon	26015287	26015405	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	intron	26015406	26015722	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	CDS	26015723	26015825	1	-	0	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	exon	26015723	26015825	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	intron	26015826	26016012	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	CDS	26016013	26016149	1	-	2	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	exon	26016013	26016149	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	intron	26016150	26016245	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	CDS	26016246	26016394	1	-	1	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	exon	26016246	26016394	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	intron	26016395	26016525	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	CDS	26016526	26016779	1	-	0	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	exon	26016526	26016779	.	-	.	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
Ledus.S1	AUGUSTUS	start_codon	26016777	26016779	.	-	0	transcript_id "Ledus.S1G312100.t1"; gene_id "Ledus.S1G312100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg219.t1 is derived from g7080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	959372	960088	.	-	.	Ledus.S2G010100
Ledus.S2	AUGUSTUS	transcript	959372	960088	.	-	.	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	stop_codon	959369	959371	.	-	0	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	CDS	959372	959458	1	-	0	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	exon	959372	959458	.	-	.	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	intron	959459	959545	.	-	.	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	CDS	959546	959624	1	-	1	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	exon	959546	959624	.	-	.	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	intron	959625	959706	.	-	.	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	CDS	959707	959778	1	-	1	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	exon	959707	959778	.	-	.	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	intron	959779	959858	.	-	.	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	CDS	959859	960088	1	-	0	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	exon	959859	960088	.	-	.	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
Ledus.S2	AUGUSTUS	start_codon	960086	960088	.	-	0	transcript_id "Ledus.S2G010100.t1"; gene_id "Ledus.S2G010100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7940.t1 is derived from g12611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7985304	7987242	.	+	.	Ledus.S5G071800
Ledus.S5	AUGUSTUS	transcript	7985304	7987242	.	+	.	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	start_codon	7985304	7985306	.	+	0	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	CDS	7985304	7985358	0.65	+	0	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	exon	7985304	7985358	.	+	.	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	intron	7985359	7985483	.	+	.	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	CDS	7985484	7985767	0.5	+	2	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	exon	7985484	7985767	.	+	.	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	intron	7985768	7985849	.	+	.	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	CDS	7985850	7986074	1	+	0	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	exon	7985850	7986074	.	+	.	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	intron	7986075	7986203	.	+	.	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	CDS	7986204	7986312	0.73	+	0	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	exon	7986204	7986312	.	+	.	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	intron	7986313	7986707	.	+	.	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	CDS	7986708	7986853	0.61	+	2	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	exon	7986708	7986853	.	+	.	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	intron	7986854	7986930	.	+	.	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	CDS	7986931	7987242	1	+	0	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	exon	7986931	7987242	.	+	.	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
Ledus.S5	AUGUSTUS	stop_codon	7987243	7987245	.	+	0	transcript_id "Ledus.S5G071800.t1"; gene_id "Ledus.S5G071800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2841.t1 is derived from g275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4127897	4129253	.	+	.	Ledus.S1G026200
Ledus.S1	AUGUSTUS	transcript	4127897	4129253	.	+	.	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	start_codon	4127897	4127899	.	+	0	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	CDS	4127897	4127922	0.96	+	0	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	exon	4127897	4127922	.	+	.	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	intron	4127923	4128007	.	+	.	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	CDS	4128008	4128432	0.74	+	1	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	exon	4128008	4128432	.	+	.	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	intron	4128433	4128538	.	+	.	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	CDS	4128539	4128854	1	+	2	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	exon	4128539	4128854	.	+	.	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	intron	4128855	4128949	.	+	.	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	CDS	4128950	4129253	0.33	+	1	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	exon	4128950	4129253	.	+	.	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
Ledus.S1	AUGUSTUS	stop_codon	4129254	4129256	.	+	0	transcript_id "Ledus.S1G026200.t1"; gene_id "Ledus.S1G026200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5379.t1 is derived from g2818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23927105	23928455	.	-	.	Ledus.S1G280000
Ledus.S1	AUGUSTUS	transcript	23927105	23928455	.	-	.	transcript_id "Ledus.S1G280000.t1"; gene_id "Ledus.S1G280000"
Ledus.S1	AUGUSTUS	stop_codon	23927102	23927104	.	-	0	transcript_id "Ledus.S1G280000.t1"; gene_id "Ledus.S1G280000"
Ledus.S1	AUGUSTUS	CDS	23927105	23927614	0.21	-	0	transcript_id "Ledus.S1G280000.t1"; gene_id "Ledus.S1G280000"
Ledus.S1	AUGUSTUS	exon	23927105	23927614	.	-	.	transcript_id "Ledus.S1G280000.t1"; gene_id "Ledus.S1G280000"
Ledus.S1	AUGUSTUS	intron	23927615	23927689	.	-	.	transcript_id "Ledus.S1G280000.t1"; gene_id "Ledus.S1G280000"
Ledus.S1	AUGUSTUS	CDS	23927690	23927968	0.63	-	0	transcript_id "Ledus.S1G280000.t1"; gene_id "Ledus.S1G280000"
Ledus.S1	AUGUSTUS	exon	23927690	23927968	.	-	.	transcript_id "Ledus.S1G280000.t1"; gene_id "Ledus.S1G280000"
Ledus.S1	AUGUSTUS	intron	23927969	23928185	.	-	.	transcript_id "Ledus.S1G280000.t1"; gene_id "Ledus.S1G280000"
Ledus.S1	AUGUSTUS	CDS	23928186	23928455	0.93	-	0	transcript_id "Ledus.S1G280000.t1"; gene_id "Ledus.S1G280000"
Ledus.S1	AUGUSTUS	exon	23928186	23928455	.	-	.	transcript_id "Ledus.S1G280000.t1"; gene_id "Ledus.S1G280000"
Ledus.S1	AUGUSTUS	start_codon	23928453	23928455	.	-	0	transcript_id "Ledus.S1G280000.t1"; gene_id "Ledus.S1G280000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2881.t1 is derived from g316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4379306	4382028	.	-	.	Ledus.S1G030200
Ledus.S1	AUGUSTUS	transcript	4379306	4382028	.	-	.	transcript_id "Ledus.S1G030200.t1"; gene_id "Ledus.S1G030200"
Ledus.S1	AUGUSTUS	stop_codon	4379303	4379305	.	-	0	transcript_id "Ledus.S1G030200.t1"; gene_id "Ledus.S1G030200"
Ledus.S1	AUGUSTUS	CDS	4379306	4381693	1	-	0	transcript_id "Ledus.S1G030200.t1"; gene_id "Ledus.S1G030200"
Ledus.S1	AUGUSTUS	exon	4379306	4381693	.	-	.	transcript_id "Ledus.S1G030200.t1"; gene_id "Ledus.S1G030200"
Ledus.S1	AUGUSTUS	intron	4381694	4381770	.	-	.	transcript_id "Ledus.S1G030200.t1"; gene_id "Ledus.S1G030200"
Ledus.S1	AUGUSTUS	CDS	4381771	4381832	1	-	2	transcript_id "Ledus.S1G030200.t1"; gene_id "Ledus.S1G030200"
Ledus.S1	AUGUSTUS	exon	4381771	4381832	.	-	.	transcript_id "Ledus.S1G030200.t1"; gene_id "Ledus.S1G030200"
Ledus.S1	AUGUSTUS	intron	4381833	4381919	.	-	.	transcript_id "Ledus.S1G030200.t1"; gene_id "Ledus.S1G030200"
Ledus.S1	AUGUSTUS	CDS	4381920	4382028	0.99	-	0	transcript_id "Ledus.S1G030200.t1"; gene_id "Ledus.S1G030200"
Ledus.S1	AUGUSTUS	exon	4381920	4382028	.	-	.	transcript_id "Ledus.S1G030200.t1"; gene_id "Ledus.S1G030200"
Ledus.S1	AUGUSTUS	start_codon	4382026	4382028	.	-	0	transcript_id "Ledus.S1G030200.t1"; gene_id "Ledus.S1G030200"
# This transcript jg10925.t2 is derived from g4543.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10926.t1 is derived from g4544.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	627538	628823	.	-	.	Ledus.S4G008200
Ledus.S4	AUGUSTUS	transcript	627538	628823	.	-	.	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	stop_codon	627535	627537	.	-	0	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	CDS	627538	627792	0.99	-	0	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	exon	627538	627792	.	-	.	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	intron	627793	627878	.	-	.	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	CDS	627879	628025	1	-	0	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	exon	627879	628025	.	-	.	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	intron	628026	628118	.	-	.	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	CDS	628119	628239	1	-	1	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	exon	628119	628239	.	-	.	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	intron	628240	628318	.	-	.	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	CDS	628319	628369	1	-	1	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	exon	628319	628369	.	-	.	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	intron	628370	628458	.	-	.	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	CDS	628459	628543	1	-	2	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	exon	628459	628543	.	-	.	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	intron	628544	628630	.	-	.	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	CDS	628631	628823	1	-	0	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	exon	628631	628823	.	-	.	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
Ledus.S4	AUGUSTUS	start_codon	628821	628823	.	-	0	transcript_id "Ledus.S4G008200.t1"; gene_id "Ledus.S4G008200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3484.t1 is derived from g919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8674858	8675775	.	-	.	Ledus.S1G090500
Ledus.S1	AUGUSTUS	transcript	8674858	8675775	.	-	.	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	stop_codon	8674855	8674857	.	-	0	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	CDS	8674858	8675082	0.92	-	0	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	exon	8674858	8675082	.	-	.	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	intron	8675083	8675179	.	-	.	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	CDS	8675180	8675253	1	-	2	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	exon	8675180	8675253	.	-	.	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	intron	8675254	8675351	.	-	.	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	CDS	8675352	8675583	1	-	0	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	exon	8675352	8675583	.	-	.	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	intron	8675584	8675667	.	-	.	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	CDS	8675668	8675775	0.52	-	0	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	exon	8675668	8675775	.	-	.	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
Ledus.S1	AUGUSTUS	start_codon	8675773	8675775	.	-	0	transcript_id "Ledus.S1G090500.t1"; gene_id "Ledus.S1G090500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12602.t1 is derived from g6224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13115134	13116500	.	+	.	Ledus.S4G175800
Ledus.S4	AUGUSTUS	transcript	13115134	13116500	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	start_codon	13115134	13115136	.	+	0	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	CDS	13115134	13115197	1	+	0	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	exon	13115134	13115197	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	intron	13115198	13115273	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	CDS	13115274	13115533	1	+	2	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	exon	13115274	13115533	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	intron	13115534	13115620	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	CDS	13115621	13115739	1	+	0	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	exon	13115621	13115739	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	intron	13115740	13115828	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	CDS	13115829	13115940	0.99	+	1	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	exon	13115829	13115940	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	intron	13115941	13116044	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	CDS	13116045	13116197	1	+	0	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	exon	13116045	13116197	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	intron	13116198	13116285	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	CDS	13116286	13116336	1	+	0	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	exon	13116286	13116336	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	intron	13116337	13116416	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	CDS	13116417	13116500	1	+	0	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	exon	13116417	13116500	.	+	.	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
Ledus.S4	AUGUSTUS	stop_codon	13116501	13116503	.	+	0	transcript_id "Ledus.S4G175800.t1"; gene_id "Ledus.S4G175800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10636.t1 is derived from g11666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16753341	16753640	.	+	.	Ledus.S3G211300
Ledus.S3	AUGUSTUS	transcript	16753341	16753640	.	+	.	transcript_id "Ledus.S3G211300.t1"; gene_id "Ledus.S3G211300"
Ledus.S3	AUGUSTUS	start_codon	16753341	16753343	.	+	0	transcript_id "Ledus.S3G211300.t1"; gene_id "Ledus.S3G211300"
Ledus.S3	AUGUSTUS	CDS	16753341	16753439	0.58	+	0	transcript_id "Ledus.S3G211300.t1"; gene_id "Ledus.S3G211300"
Ledus.S3	AUGUSTUS	exon	16753341	16753439	.	+	.	transcript_id "Ledus.S3G211300.t1"; gene_id "Ledus.S3G211300"
Ledus.S3	AUGUSTUS	intron	16753440	16753517	.	+	.	transcript_id "Ledus.S3G211300.t1"; gene_id "Ledus.S3G211300"
Ledus.S3	AUGUSTUS	CDS	16753518	16753640	0.55	+	0	transcript_id "Ledus.S3G211300.t1"; gene_id "Ledus.S3G211300"
Ledus.S3	AUGUSTUS	exon	16753518	16753640	.	+	.	transcript_id "Ledus.S3G211300.t1"; gene_id "Ledus.S3G211300"
Ledus.S3	AUGUSTUS	stop_codon	16753641	16753643	.	+	0	transcript_id "Ledus.S3G211300.t1"; gene_id "Ledus.S3G211300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6111.t1 is derived from g3554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28948948	28953209	.	-	.	Ledus.S1G353200
Ledus.S1	AUGUSTUS	transcript	28948948	28953209	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	stop_codon	28948945	28948947	.	-	0	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28948948	28949013	1	-	0	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28948948	28949013	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28949014	28949103	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28949104	28949238	1	-	0	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28949104	28949238	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28949239	28949341	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28949342	28949494	0.99	-	0	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28949342	28949494	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28949495	28949597	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28949598	28949796	1	-	1	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28949598	28949796	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28949797	28949886	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28949887	28949924	1	-	0	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28949887	28949924	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28949925	28950010	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28950011	28950182	1	-	1	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28950011	28950182	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28950183	28950273	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28950274	28950396	1	-	1	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28950274	28950396	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28950397	28950488	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28950489	28951010	0.99	-	1	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28950489	28951010	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28951011	28951327	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28951328	28951626	0.62	-	0	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28951328	28951626	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28951627	28951702	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28951703	28951855	1	-	0	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28951703	28951855	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28951856	28951954	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28951955	28952077	1	-	0	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28951955	28952077	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28952078	28952170	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28952171	28952355	1	-	2	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28952171	28952355	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28952356	28952433	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28952434	28952523	1	-	2	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28952434	28952523	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28952524	28952626	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28952627	28952767	1	-	2	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28952627	28952767	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28952768	28952844	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28952845	28952994	0.93	-	2	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28952845	28952994	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	intron	28952995	28953145	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	CDS	28953146	28953209	0.91	-	0	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	exon	28953146	28953209	.	-	.	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
Ledus.S1	AUGUSTUS	start_codon	28953207	28953209	.	-	0	transcript_id "Ledus.S1G353200.t1"; gene_id "Ledus.S1G353200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12224.t1 is derived from g5843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10491518	10492653	.	-	.	Ledus.S4G138000
Ledus.S4	AUGUSTUS	transcript	10491518	10492653	.	-	.	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	stop_codon	10491515	10491517	.	-	0	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	CDS	10491518	10491682	1	-	0	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	exon	10491518	10491682	.	-	.	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	intron	10491683	10491769	.	-	.	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	CDS	10491770	10491971	1	-	1	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	exon	10491770	10491971	.	-	.	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	intron	10491972	10492065	.	-	.	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	CDS	10492066	10492181	1	-	0	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	exon	10492066	10492181	.	-	.	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	intron	10492182	10492278	.	-	.	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	CDS	10492279	10492364	1	-	2	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	exon	10492279	10492364	.	-	.	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	intron	10492365	10492448	.	-	.	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	CDS	10492449	10492512	1	-	0	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	exon	10492449	10492512	.	-	.	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	intron	10492513	10492632	.	-	.	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	CDS	10492633	10492653	1	-	0	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	exon	10492633	10492653	.	-	.	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
Ledus.S4	AUGUSTUS	start_codon	10492651	10492653	.	-	0	transcript_id "Ledus.S4G138000.t1"; gene_id "Ledus.S4G138000"
# This transcript jg11921.t2 is derived from g5540.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11922.t1 is derived from g5541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7765350	7767436	.	-	.	Ledus.S4G107800
Ledus.S4	AUGUSTUS	transcript	7765350	7767436	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	stop_codon	7765347	7765349	.	-	0	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	CDS	7765350	7765724	0.99	-	0	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	exon	7765350	7765724	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	intron	7765725	7765820	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	CDS	7765821	7766036	1	-	0	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	exon	7765821	7766036	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	intron	7766037	7766110	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	CDS	7766111	7766241	1	-	2	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	exon	7766111	7766241	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	intron	7766242	7766337	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	CDS	7766338	7766524	1	-	0	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	exon	7766338	7766524	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	intron	7766525	7766652	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	CDS	7766653	7766747	1	-	2	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	exon	7766653	7766747	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	intron	7766748	7766842	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	CDS	7766843	7767084	0.76	-	1	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	exon	7766843	7767084	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	intron	7767085	7767179	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	CDS	7767180	7767436	0.57	-	0	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	exon	7767180	7767436	.	-	.	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
Ledus.S4	AUGUSTUS	start_codon	7767434	7767436	.	-	0	transcript_id "Ledus.S4G107800.t1"; gene_id "Ledus.S4G107800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10663.t1 is derived from g11693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16925910	16928915	.	+	.	Ledus.S3G214000
Ledus.S3	AUGUSTUS	transcript	16925910	16928915	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	start_codon	16925910	16925912	.	+	0	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16925910	16926143	0.8	+	0	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16925910	16926143	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16926144	16926266	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16926267	16926447	0.99	+	0	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16926267	16926447	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16926448	16926541	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16926542	16926627	1	+	2	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16926542	16926627	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16926628	16926731	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16926732	16926836	1	+	0	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16926732	16926836	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16926837	16926922	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16926923	16926985	1	+	0	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16926923	16926985	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16926986	16927169	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16927170	16927279	1	+	0	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16927170	16927279	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16927280	16927450	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16927451	16927570	1	+	1	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16927451	16927570	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16927571	16927688	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16927689	16927764	1	+	1	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16927689	16927764	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16927765	16927871	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16927872	16927945	1	+	0	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16927872	16927945	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16927946	16928028	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16928029	16928089	1	+	1	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16928029	16928089	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16928090	16928185	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16928186	16928245	1	+	0	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16928186	16928245	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16928246	16928377	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16928378	16928475	1	+	0	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16928378	16928475	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16928476	16928563	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16928564	16928687	1	+	1	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16928564	16928687	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	intron	16928688	16928780	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	CDS	16928781	16928915	0.97	+	0	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	exon	16928781	16928915	.	+	.	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
Ledus.S3	AUGUSTUS	stop_codon	16928916	16928918	.	+	0	transcript_id "Ledus.S3G214000.t1"; gene_id "Ledus.S3G214000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9621.t1 is derived from g10651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8445231	8445832	.	+	.	Ledus.S3G109800
Ledus.S3	AUGUSTUS	transcript	8445231	8445832	.	+	.	transcript_id "Ledus.S3G109800.t1"; gene_id "Ledus.S3G109800"
Ledus.S3	AUGUSTUS	start_codon	8445231	8445233	.	+	0	transcript_id "Ledus.S3G109800.t1"; gene_id "Ledus.S3G109800"
Ledus.S3	AUGUSTUS	CDS	8445231	8445252	0.69	+	0	transcript_id "Ledus.S3G109800.t1"; gene_id "Ledus.S3G109800"
Ledus.S3	AUGUSTUS	exon	8445231	8445252	.	+	.	transcript_id "Ledus.S3G109800.t1"; gene_id "Ledus.S3G109800"
Ledus.S3	AUGUSTUS	intron	8445253	8445328	.	+	.	transcript_id "Ledus.S3G109800.t1"; gene_id "Ledus.S3G109800"
Ledus.S3	AUGUSTUS	CDS	8445329	8445341	0.82	+	2	transcript_id "Ledus.S3G109800.t1"; gene_id "Ledus.S3G109800"
Ledus.S3	AUGUSTUS	exon	8445329	8445341	.	+	.	transcript_id "Ledus.S3G109800.t1"; gene_id "Ledus.S3G109800"
Ledus.S3	AUGUSTUS	intron	8445342	8445435	.	+	.	transcript_id "Ledus.S3G109800.t1"; gene_id "Ledus.S3G109800"
Ledus.S3	AUGUSTUS	CDS	8445436	8445832	1	+	1	transcript_id "Ledus.S3G109800.t1"; gene_id "Ledus.S3G109800"
Ledus.S3	AUGUSTUS	exon	8445436	8445832	.	+	.	transcript_id "Ledus.S3G109800.t1"; gene_id "Ledus.S3G109800"
Ledus.S3	AUGUSTUS	stop_codon	8445833	8445835	.	+	0	transcript_id "Ledus.S3G109800.t1"; gene_id "Ledus.S3G109800"
# This transcript jg7784.t2 is derived from g12455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7785.t1 is derived from g12456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6550421	6551390	.	+	.	Ledus.S5G056300
Ledus.S5	AUGUSTUS	transcript	6550421	6551390	.	+	.	transcript_id "Ledus.S5G056300.t1"; gene_id "Ledus.S5G056300"
Ledus.S5	AUGUSTUS	start_codon	6550421	6550423	.	+	0	transcript_id "Ledus.S5G056300.t1"; gene_id "Ledus.S5G056300"
Ledus.S5	AUGUSTUS	CDS	6550421	6550703	0.68	+	0	transcript_id "Ledus.S5G056300.t1"; gene_id "Ledus.S5G056300"
Ledus.S5	AUGUSTUS	exon	6550421	6550703	.	+	.	transcript_id "Ledus.S5G056300.t1"; gene_id "Ledus.S5G056300"
Ledus.S5	AUGUSTUS	intron	6550704	6550899	.	+	.	transcript_id "Ledus.S5G056300.t1"; gene_id "Ledus.S5G056300"
Ledus.S5	AUGUSTUS	CDS	6550900	6551066	0.46	+	2	transcript_id "Ledus.S5G056300.t1"; gene_id "Ledus.S5G056300"
Ledus.S5	AUGUSTUS	exon	6550900	6551066	.	+	.	transcript_id "Ledus.S5G056300.t1"; gene_id "Ledus.S5G056300"
Ledus.S5	AUGUSTUS	intron	6551067	6551342	.	+	.	transcript_id "Ledus.S5G056300.t1"; gene_id "Ledus.S5G056300"
Ledus.S5	AUGUSTUS	CDS	6551343	6551390	0.65	+	0	transcript_id "Ledus.S5G056300.t1"; gene_id "Ledus.S5G056300"
Ledus.S5	AUGUSTUS	exon	6551343	6551390	.	+	.	transcript_id "Ledus.S5G056300.t1"; gene_id "Ledus.S5G056300"
Ledus.S5	AUGUSTUS	stop_codon	6551391	6551393	.	+	0	transcript_id "Ledus.S5G056300.t1"; gene_id "Ledus.S5G056300"
# This transcript jg3855.t2 is derived from g1291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3856.t1 is derived from g1292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13195883	13198602	.	+	.	Ledus.S1G127700
Ledus.S1	AUGUSTUS	transcript	13195883	13198602	.	+	.	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	start_codon	13195883	13195885	.	+	0	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	CDS	13195883	13196816	0.44	+	0	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	exon	13195883	13196816	.	+	.	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	intron	13196817	13196961	.	+	.	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	CDS	13196962	13197143	1	+	2	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	exon	13196962	13197143	.	+	.	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	intron	13197144	13197307	.	+	.	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	CDS	13197308	13197397	1	+	0	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	exon	13197308	13197397	.	+	.	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	intron	13197398	13197480	.	+	.	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	CDS	13197481	13197765	1	+	0	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	exon	13197481	13197765	.	+	.	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	intron	13197766	13197892	.	+	.	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	CDS	13197893	13198111	0.99	+	0	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	exon	13197893	13198111	.	+	.	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	intron	13198112	13198245	.	+	.	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	CDS	13198246	13198602	0.98	+	0	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	exon	13198246	13198602	.	+	.	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
Ledus.S1	AUGUSTUS	stop_codon	13198603	13198605	.	+	0	transcript_id "Ledus.S1G127700.t1"; gene_id "Ledus.S1G127700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6715.t1 is derived from g4158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33499867	33501413	.	-	.	Ledus.S1G413600
Ledus.S1	AUGUSTUS	transcript	33499867	33501413	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	stop_codon	33499864	33499866	.	-	0	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	CDS	33499867	33500371	1	-	1	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	exon	33499867	33500371	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	intron	33500372	33500446	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	CDS	33500447	33500550	1	-	0	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	exon	33500447	33500550	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	intron	33500551	33500641	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	CDS	33500642	33500704	1	-	0	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	exon	33500642	33500704	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	intron	33500705	33500792	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	CDS	33500793	33500821	1	-	2	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	exon	33500793	33500821	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	intron	33500822	33500905	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	CDS	33500906	33500944	0.99	-	2	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	exon	33500906	33500944	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	intron	33500945	33501053	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	CDS	33501054	33501103	1	-	1	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	exon	33501054	33501103	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	intron	33501104	33501189	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	CDS	33501190	33501413	0.74	-	0	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	exon	33501190	33501413	.	-	.	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
Ledus.S1	AUGUSTUS	start_codon	33501411	33501413	.	-	0	transcript_id "Ledus.S1G413600.t1"; gene_id "Ledus.S1G413600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8998.t1 is derived from g10028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3748207	3751148	.	+	.	Ledus.S3G047500
Ledus.S3	AUGUSTUS	transcript	3748207	3751148	.	+	.	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	start_codon	3748207	3748209	.	+	0	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	CDS	3748207	3748644	0.59	+	0	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	exon	3748207	3748644	.	+	.	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	intron	3748645	3748750	.	+	.	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	CDS	3748751	3749453	0.93	+	0	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	exon	3748751	3749453	.	+	.	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	intron	3749454	3749522	.	+	.	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	CDS	3749523	3750599	0.81	+	2	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	exon	3749523	3750599	.	+	.	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	intron	3750600	3750691	.	+	.	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	CDS	3750692	3750760	0.97	+	2	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	exon	3750692	3750760	.	+	.	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	intron	3750761	3750899	.	+	.	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	CDS	3750900	3750918	0.76	+	2	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	exon	3750900	3750918	.	+	.	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	intron	3750919	3751138	.	+	.	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	CDS	3751139	3751148	0.76	+	1	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	exon	3751139	3751148	.	+	.	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
Ledus.S3	AUGUSTUS	stop_codon	3751149	3751151	.	+	0	transcript_id "Ledus.S3G047500.t1"; gene_id "Ledus.S3G047500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4607.t1 is derived from g2044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18119662	18127133	.	+	.	Ledus.S1G202800
Ledus.S1	AUGUSTUS	transcript	18119662	18127133	.	+	.	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	start_codon	18119662	18119664	.	+	0	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	CDS	18119662	18126126	0.88	+	0	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	exon	18119662	18126126	.	+	.	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	intron	18126127	18126255	.	+	.	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	CDS	18126256	18126430	0.56	+	0	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	exon	18126256	18126430	.	+	.	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	intron	18126431	18126521	.	+	.	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	CDS	18126522	18126592	1	+	2	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	exon	18126522	18126592	.	+	.	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	intron	18126593	18126693	.	+	.	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	CDS	18126694	18126818	0.99	+	0	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	exon	18126694	18126818	.	+	.	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	intron	18126819	18126929	.	+	.	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	CDS	18126930	18126990	1	+	1	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	exon	18126930	18126990	.	+	.	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	intron	18126991	18127079	.	+	.	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	CDS	18127080	18127133	1	+	0	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	exon	18127080	18127133	.	+	.	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
Ledus.S1	AUGUSTUS	stop_codon	18127134	18127136	.	+	0	transcript_id "Ledus.S1G202800.t1"; gene_id "Ledus.S1G202800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5158.t1 is derived from g2597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22016599	22018784	.	-	.	Ledus.S1G257900
Ledus.S1	AUGUSTUS	transcript	22016599	22018784	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	stop_codon	22016596	22016598	.	-	0	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	CDS	22016599	22016898	1	-	0	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	exon	22016599	22016898	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	intron	22016899	22016977	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	CDS	22016978	22017052	1	-	0	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	exon	22016978	22017052	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	intron	22017053	22017171	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	CDS	22017172	22017241	1	-	1	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	exon	22017172	22017241	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	intron	22017242	22017341	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	CDS	22017342	22017424	1	-	0	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	exon	22017342	22017424	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	intron	22017425	22017570	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	CDS	22017571	22017738	1	-	0	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	exon	22017571	22017738	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	intron	22017739	22017839	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	CDS	22017840	22018008	0.99	-	1	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	exon	22017840	22018008	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	intron	22018009	22018140	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	CDS	22018141	22018387	1	-	2	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	exon	22018141	22018387	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	intron	22018388	22018483	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	CDS	22018484	22018784	0.62	-	0	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	exon	22018484	22018784	.	-	.	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
Ledus.S1	AUGUSTUS	start_codon	22018782	22018784	.	-	0	transcript_id "Ledus.S1G257900.t1"; gene_id "Ledus.S1G257900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8091.t1 is derived from g12762.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9108853	9109482	.	+	.	Ledus.S5G086900
Ledus.S5	AUGUSTUS	transcript	9108853	9109482	.	+	.	transcript_id "Ledus.S5G086900.t1"; gene_id "Ledus.S5G086900"
Ledus.S5	AUGUSTUS	start_codon	9108853	9108855	.	+	0	transcript_id "Ledus.S5G086900.t1"; gene_id "Ledus.S5G086900"
Ledus.S5	AUGUSTUS	CDS	9108853	9109002	0.72	+	0	transcript_id "Ledus.S5G086900.t1"; gene_id "Ledus.S5G086900"
Ledus.S5	AUGUSTUS	exon	9108853	9109002	.	+	.	transcript_id "Ledus.S5G086900.t1"; gene_id "Ledus.S5G086900"
Ledus.S5	AUGUSTUS	intron	9109003	9109216	.	+	.	transcript_id "Ledus.S5G086900.t1"; gene_id "Ledus.S5G086900"
Ledus.S5	AUGUSTUS	CDS	9109217	9109331	1	+	0	transcript_id "Ledus.S5G086900.t1"; gene_id "Ledus.S5G086900"
Ledus.S5	AUGUSTUS	exon	9109217	9109331	.	+	.	transcript_id "Ledus.S5G086900.t1"; gene_id "Ledus.S5G086900"
Ledus.S5	AUGUSTUS	intron	9109332	9109411	.	+	.	transcript_id "Ledus.S5G086900.t1"; gene_id "Ledus.S5G086900"
Ledus.S5	AUGUSTUS	CDS	9109412	9109482	0.92	+	2	transcript_id "Ledus.S5G086900.t1"; gene_id "Ledus.S5G086900"
Ledus.S5	AUGUSTUS	exon	9109412	9109482	.	+	.	transcript_id "Ledus.S5G086900.t1"; gene_id "Ledus.S5G086900"
Ledus.S5	AUGUSTUS	stop_codon	9109483	9109485	.	+	0	transcript_id "Ledus.S5G086900.t1"; gene_id "Ledus.S5G086900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3479.t1 is derived from g914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8654097	8655578	.	-	.	Ledus.S1G090000
Ledus.S1	AUGUSTUS	transcript	8654097	8655578	.	-	.	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	stop_codon	8654094	8654096	.	-	0	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	CDS	8654097	8654400	1	-	1	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	exon	8654097	8654400	.	-	.	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	intron	8654401	8654483	.	-	.	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	CDS	8654484	8654614	1	-	0	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	exon	8654484	8654614	.	-	.	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	intron	8654615	8654719	.	-	.	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	CDS	8654720	8654827	0.97	-	0	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	exon	8654720	8654827	.	-	.	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	intron	8654828	8654910	.	-	.	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	CDS	8654911	8655113	0.91	-	2	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	exon	8654911	8655113	.	-	.	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	intron	8655114	8655271	.	-	.	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	CDS	8655272	8655301	0.48	-	2	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	exon	8655272	8655301	.	-	.	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	intron	8655302	8655466	.	-	.	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	CDS	8655467	8655578	0.57	-	0	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	exon	8655467	8655578	.	-	.	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
Ledus.S1	AUGUSTUS	start_codon	8655576	8655578	.	-	0	transcript_id "Ledus.S1G090000.t1"; gene_id "Ledus.S1G090000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg5317.t1 is derived from g2756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23283911	23286163	.	+	.	Ledus.S1G273800
Ledus.S1	AUGUSTUS	transcript	23283911	23285976	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	start_codon	23283911	23283913	.	+	0	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23283911	23284130	0.97	+	0	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23283911	23284130	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23284131	23284350	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23284351	23284404	0.97	+	2	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23284351	23284404	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23284405	23284492	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23284493	23284916	1	+	2	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23284493	23284916	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23284917	23285008	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23285009	23285097	1	+	1	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23285009	23285097	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23285098	23285175	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23285176	23285583	0.79	+	2	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23285176	23285583	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23285584	23285661	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23285662	23285831	0.88	+	2	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23285662	23285831	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23285832	23285922	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23285923	23285976	0.99	+	0	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23285923	23285976	.	+	.	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	stop_codon	23285977	23285979	.	+	0	transcript_id "Ledus.S1G273800.t1"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	transcript	23283911	23286163	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	start_codon	23283911	23283913	.	+	0	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23283911	23284130	0.96	+	0	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23283911	23284130	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23284131	23284350	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23284351	23284404	0.98	+	2	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23284351	23284404	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23284405	23284492	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23284493	23284916	1	+	2	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23284493	23284916	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23284917	23285008	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23285009	23285097	1	+	1	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23285009	23285097	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23285098	23285175	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23285176	23285579	0.8	+	2	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23285176	23285579	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23285580	23285661	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23285662	23285831	1	+	0	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23285662	23285831	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23285832	23285922	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23285923	23286163	0.82	+	1	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23285923	23286163	.	+	.	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	stop_codon	23286164	23286166	.	+	0	transcript_id "Ledus.S1G273800.t2"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	transcript	23283911	23286163	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	start_codon	23283911	23283913	.	+	0	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23283911	23284156	0.58	+	0	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23283911	23284156	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23284157	23284274	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23284275	23284404	0.77	+	0	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23284275	23284404	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23284405	23284492	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23284493	23284916	1	+	2	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23284493	23284916	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23284917	23285008	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23285009	23285097	1	+	1	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23285009	23285097	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23285098	23285175	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23285176	23285579	0.83	+	2	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23285176	23285579	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23285580	23285661	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23285662	23285831	1	+	0	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23285662	23285831	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	intron	23285832	23285922	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	CDS	23285923	23286163	0.8	+	1	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	exon	23285923	23286163	.	+	.	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
Ledus.S1	AUGUSTUS	stop_codon	23286164	23286166	.	+	0	transcript_id "Ledus.S1G273800.t3"; gene_id "Ledus.S1G273800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1430.t1 is derived from g8291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10011114	10011692	.	-	.	Ledus.S2G131200
Ledus.S2	AUGUSTUS	transcript	10011114	10011692	.	-	.	transcript_id "Ledus.S2G131200.t1"; gene_id "Ledus.S2G131200"
Ledus.S2	AUGUSTUS	stop_codon	10011111	10011113	.	-	0	transcript_id "Ledus.S2G131200.t1"; gene_id "Ledus.S2G131200"
Ledus.S2	AUGUSTUS	CDS	10011114	10011385	0.96	-	2	transcript_id "Ledus.S2G131200.t1"; gene_id "Ledus.S2G131200"
Ledus.S2	AUGUSTUS	exon	10011114	10011385	.	-	.	transcript_id "Ledus.S2G131200.t1"; gene_id "Ledus.S2G131200"
Ledus.S2	AUGUSTUS	intron	10011386	10011502	.	-	.	transcript_id "Ledus.S2G131200.t1"; gene_id "Ledus.S2G131200"
Ledus.S2	AUGUSTUS	CDS	10011503	10011692	1	-	0	transcript_id "Ledus.S2G131200.t1"; gene_id "Ledus.S2G131200"
Ledus.S2	AUGUSTUS	exon	10011503	10011692	.	-	.	transcript_id "Ledus.S2G131200.t1"; gene_id "Ledus.S2G131200"
Ledus.S2	AUGUSTUS	start_codon	10011690	10011692	.	-	0	transcript_id "Ledus.S2G131200.t1"; gene_id "Ledus.S2G131200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12706.t1 is derived from g6328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14000668	14000895	.	+	.	Ledus.S4G186200
Ledus.S4	AUGUSTUS	transcript	14000668	14000895	.	+	.	transcript_id "Ledus.S4G186200.t1"; gene_id "Ledus.S4G186200"
Ledus.S4	AUGUSTUS	start_codon	14000668	14000670	.	+	0	transcript_id "Ledus.S4G186200.t1"; gene_id "Ledus.S4G186200"
Ledus.S4	AUGUSTUS	CDS	14000668	14000895	0.64	+	0	transcript_id "Ledus.S4G186200.t1"; gene_id "Ledus.S4G186200"
Ledus.S4	AUGUSTUS	exon	14000668	14000895	.	+	.	transcript_id "Ledus.S4G186200.t1"; gene_id "Ledus.S4G186200"
Ledus.S4	AUGUSTUS	stop_codon	14000896	14000898	.	+	0	transcript_id "Ledus.S4G186200.t1"; gene_id "Ledus.S4G186200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1114.t1 is derived from g7975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7607547	7609679	.	+	.	Ledus.S2G099600
Ledus.S2	AUGUSTUS	transcript	7607547	7609679	.	+	.	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	start_codon	7607547	7607549	.	+	0	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	CDS	7607547	7607984	1	+	0	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	exon	7607547	7607984	.	+	.	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	intron	7607985	7608068	.	+	.	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	CDS	7608069	7608288	1	+	0	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	exon	7608069	7608288	.	+	.	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	intron	7608289	7608383	.	+	.	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	CDS	7608384	7608688	1	+	2	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	exon	7608384	7608688	.	+	.	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	intron	7608689	7608780	.	+	.	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	CDS	7608781	7608978	1	+	0	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	exon	7608781	7608978	.	+	.	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	intron	7608979	7609069	.	+	.	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	CDS	7609070	7609111	1	+	0	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	exon	7609070	7609111	.	+	.	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	intron	7609112	7609202	.	+	.	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	CDS	7609203	7609679	1	+	0	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	exon	7609203	7609679	.	+	.	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
Ledus.S2	AUGUSTUS	stop_codon	7609680	7609682	.	+	0	transcript_id "Ledus.S2G099600.t1"; gene_id "Ledus.S2G099600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg517.t1 is derived from g7378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3016321	3018153	.	+	.	Ledus.S2G039900
Ledus.S2	AUGUSTUS	transcript	3016321	3018153	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	start_codon	3016321	3016323	.	+	0	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	CDS	3016321	3016491	0.54	+	0	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	exon	3016321	3016491	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	intron	3016492	3016602	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	CDS	3016603	3016714	1	+	0	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	exon	3016603	3016714	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	intron	3016715	3016797	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	CDS	3016798	3016898	1	+	2	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	exon	3016798	3016898	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	intron	3016899	3017024	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	CDS	3017025	3017102	1	+	0	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	exon	3017025	3017102	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	intron	3017103	3017247	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	CDS	3017248	3017406	1	+	0	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	exon	3017248	3017406	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	intron	3017407	3017557	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	CDS	3017558	3017670	1	+	0	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	exon	3017558	3017670	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	intron	3017671	3017764	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	CDS	3017765	3017882	1	+	1	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	exon	3017765	3017882	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	intron	3017883	3017979	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	CDS	3017980	3018153	0.98	+	0	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	exon	3017980	3018153	.	+	.	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
Ledus.S2	AUGUSTUS	stop_codon	3018154	3018156	.	+	0	transcript_id "Ledus.S2G039900.t1"; gene_id "Ledus.S2G039900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3345.t1 is derived from g780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7613023	7614249	.	-	.	Ledus.S1G076600
Ledus.S1	AUGUSTUS	transcript	7613023	7614249	.	-	.	transcript_id "Ledus.S1G076600.t1"; gene_id "Ledus.S1G076600"
Ledus.S1	AUGUSTUS	stop_codon	7613020	7613022	.	-	0	transcript_id "Ledus.S1G076600.t1"; gene_id "Ledus.S1G076600"
Ledus.S1	AUGUSTUS	CDS	7613023	7613260	0.71	-	1	transcript_id "Ledus.S1G076600.t1"; gene_id "Ledus.S1G076600"
Ledus.S1	AUGUSTUS	exon	7613023	7613260	.	-	.	transcript_id "Ledus.S1G076600.t1"; gene_id "Ledus.S1G076600"
Ledus.S1	AUGUSTUS	intron	7613261	7613363	.	-	.	transcript_id "Ledus.S1G076600.t1"; gene_id "Ledus.S1G076600"
Ledus.S1	AUGUSTUS	CDS	7613364	7614151	0.19	-	0	transcript_id "Ledus.S1G076600.t1"; gene_id "Ledus.S1G076600"
Ledus.S1	AUGUSTUS	exon	7613364	7614151	.	-	.	transcript_id "Ledus.S1G076600.t1"; gene_id "Ledus.S1G076600"
Ledus.S1	AUGUSTUS	intron	7614152	7614243	.	-	.	transcript_id "Ledus.S1G076600.t1"; gene_id "Ledus.S1G076600"
Ledus.S1	AUGUSTUS	CDS	7614244	7614249	0.16	-	0	transcript_id "Ledus.S1G076600.t1"; gene_id "Ledus.S1G076600"
Ledus.S1	AUGUSTUS	exon	7614244	7614249	.	-	.	transcript_id "Ledus.S1G076600.t1"; gene_id "Ledus.S1G076600"
Ledus.S1	AUGUSTUS	start_codon	7614247	7614249	.	-	0	transcript_id "Ledus.S1G076600.t1"; gene_id "Ledus.S1G076600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8044.t1 is derived from g12715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8774386	8776711	.	-	.	Ledus.S5G082200
Ledus.S5	AUGUSTUS	transcript	8774386	8776711	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	stop_codon	8774383	8774385	.	-	0	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	CDS	8774386	8774478	1	-	0	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	exon	8774386	8774478	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	intron	8774479	8774560	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	CDS	8774561	8774671	1	-	0	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	exon	8774561	8774671	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	intron	8774672	8774764	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	CDS	8774765	8774836	1	-	0	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	exon	8774765	8774836	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	intron	8774837	8774921	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	CDS	8774922	8775087	1	-	1	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	exon	8774922	8775087	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	intron	8775088	8775248	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	CDS	8775249	8775357	1	-	2	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	exon	8775249	8775357	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	intron	8775358	8775490	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	CDS	8775491	8775569	1	-	0	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	exon	8775491	8775569	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	intron	8775570	8775688	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	CDS	8775689	8775789	0.99	-	2	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	exon	8775689	8775789	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	intron	8775790	8775935	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	CDS	8775936	8775983	1	-	2	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	exon	8775936	8775983	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	intron	8775984	8776250	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	CDS	8776251	8776356	1	-	0	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	exon	8776251	8776356	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	intron	8776357	8776427	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	CDS	8776428	8776541	1	-	0	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	exon	8776428	8776541	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	intron	8776542	8776612	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	CDS	8776613	8776711	0.71	-	0	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	exon	8776613	8776711	.	-	.	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
Ledus.S5	AUGUSTUS	start_codon	8776709	8776711	.	-	0	transcript_id "Ledus.S5G082200.t1"; gene_id "Ledus.S5G082200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9968.t1 is derived from g10998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11606524	11608890	.	-	.	Ledus.S3G144500
Ledus.S3	AUGUSTUS	transcript	11606524	11608890	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	stop_codon	11606521	11606523	.	-	0	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	CDS	11606524	11606555	0.99	-	2	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	exon	11606524	11606555	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	intron	11606556	11606653	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	CDS	11606654	11606786	1	-	0	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	exon	11606654	11606786	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	intron	11606787	11606930	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	CDS	11606931	11607009	1	-	1	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	exon	11606931	11607009	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	intron	11607010	11607174	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	CDS	11607175	11607261	1	-	1	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	exon	11607175	11607261	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	intron	11607262	11607435	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	CDS	11607436	11607535	1	-	2	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	exon	11607436	11607535	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	intron	11607536	11607672	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	CDS	11607673	11607730	1	-	0	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	exon	11607673	11607730	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	intron	11607731	11607823	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	CDS	11607824	11607892	1	-	0	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	exon	11607824	11607892	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	intron	11607893	11607995	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	CDS	11607996	11608087	1	-	2	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	exon	11607996	11608087	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	intron	11608088	11608325	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	CDS	11608326	11608455	0.99	-	0	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	exon	11608326	11608455	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	intron	11608456	11608572	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	CDS	11608573	11608668	1	-	0	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	exon	11608573	11608668	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	intron	11608669	11608746	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	CDS	11608747	11608890	0.56	-	0	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	exon	11608747	11608890	.	-	.	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
Ledus.S3	AUGUSTUS	start_codon	11608888	11608890	.	-	0	transcript_id "Ledus.S3G144500.t1"; gene_id "Ledus.S3G144500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8465.t1 is derived from g13137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11912848	11917986	.	-	.	Ledus.S5G124300
Ledus.S5	AUGUSTUS	transcript	11912848	11917986	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	stop_codon	11912845	11912847	.	-	0	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	CDS	11912848	11912892	0.73	-	0	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	exon	11912848	11912892	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	intron	11912893	11913063	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	CDS	11913064	11913143	1	-	2	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	exon	11913064	11913143	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	intron	11913144	11913271	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	CDS	11913272	11913357	0.96	-	1	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	exon	11913272	11913357	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	intron	11913358	11913443	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	CDS	11913444	11916798	0.96	-	2	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	exon	11913444	11916798	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	intron	11916799	11916984	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	CDS	11916985	11917256	0.95	-	1	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	exon	11916985	11917256	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	intron	11917257	11917628	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	CDS	11917629	11917763	0.65	-	1	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	exon	11917629	11917763	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	intron	11917764	11917873	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	CDS	11917874	11917986	0.82	-	0	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	exon	11917874	11917986	.	-	.	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
Ledus.S5	AUGUSTUS	start_codon	11917984	11917986	.	-	0	transcript_id "Ledus.S5G124300.t1"; gene_id "Ledus.S5G124300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4007.t1 is derived from g1443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14046810	14047163	.	-	.	Ledus.S1G142800
Ledus.S1	AUGUSTUS	transcript	14046810	14047163	.	-	.	transcript_id "Ledus.S1G142800.t1"; gene_id "Ledus.S1G142800"
Ledus.S1	AUGUSTUS	stop_codon	14046807	14046809	.	-	0	transcript_id "Ledus.S1G142800.t1"; gene_id "Ledus.S1G142800"
Ledus.S1	AUGUSTUS	CDS	14046810	14046942	0.8	-	1	transcript_id "Ledus.S1G142800.t1"; gene_id "Ledus.S1G142800"
Ledus.S1	AUGUSTUS	exon	14046810	14046942	.	-	.	transcript_id "Ledus.S1G142800.t1"; gene_id "Ledus.S1G142800"
Ledus.S1	AUGUSTUS	intron	14046943	14047038	.	-	.	transcript_id "Ledus.S1G142800.t1"; gene_id "Ledus.S1G142800"
Ledus.S1	AUGUSTUS	CDS	14047039	14047163	0.81	-	0	transcript_id "Ledus.S1G142800.t1"; gene_id "Ledus.S1G142800"
Ledus.S1	AUGUSTUS	exon	14047039	14047163	.	-	.	transcript_id "Ledus.S1G142800.t1"; gene_id "Ledus.S1G142800"
Ledus.S1	AUGUSTUS	start_codon	14047161	14047163	.	-	0	transcript_id "Ledus.S1G142800.t1"; gene_id "Ledus.S1G142800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11203.t1 is derived from g4821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2701469	2703076	.	+	.	Ledus.S4G035900
Ledus.S4	AUGUSTUS	transcript	2701469	2703076	.	+	.	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	start_codon	2701469	2701471	.	+	0	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	CDS	2701469	2702107	0.99	+	0	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	exon	2701469	2702107	.	+	.	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	intron	2702108	2702251	.	+	.	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	CDS	2702252	2702401	0.91	+	0	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	exon	2702252	2702401	.	+	.	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	intron	2702402	2702636	.	+	.	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	CDS	2702637	2702803	0.85	+	0	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	exon	2702637	2702803	.	+	.	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	intron	2702804	2702952	.	+	.	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	CDS	2702953	2703076	0.96	+	1	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	exon	2702953	2703076	.	+	.	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
Ledus.S4	AUGUSTUS	stop_codon	2703077	2703079	.	+	0	transcript_id "Ledus.S4G035900.t1"; gene_id "Ledus.S4G035900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6659.t1 is derived from g4102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32943175	32943489	.	-	.	Ledus.S1G408000
Ledus.S1	AUGUSTUS	transcript	32943175	32943489	.	-	.	transcript_id "Ledus.S1G408000.t1"; gene_id "Ledus.S1G408000"
Ledus.S1	AUGUSTUS	stop_codon	32943172	32943174	.	-	0	transcript_id "Ledus.S1G408000.t1"; gene_id "Ledus.S1G408000"
Ledus.S1	AUGUSTUS	CDS	32943175	32943213	0.43	-	0	transcript_id "Ledus.S1G408000.t1"; gene_id "Ledus.S1G408000"
Ledus.S1	AUGUSTUS	exon	32943175	32943213	.	-	.	transcript_id "Ledus.S1G408000.t1"; gene_id "Ledus.S1G408000"
Ledus.S1	AUGUSTUS	intron	32943214	32943303	.	-	.	transcript_id "Ledus.S1G408000.t1"; gene_id "Ledus.S1G408000"
Ledus.S1	AUGUSTUS	CDS	32943304	32943489	0.35	-	0	transcript_id "Ledus.S1G408000.t1"; gene_id "Ledus.S1G408000"
Ledus.S1	AUGUSTUS	exon	32943304	32943489	.	-	.	transcript_id "Ledus.S1G408000.t1"; gene_id "Ledus.S1G408000"
Ledus.S1	AUGUSTUS	start_codon	32943487	32943489	.	-	0	transcript_id "Ledus.S1G408000.t1"; gene_id "Ledus.S1G408000"
# This transcript jg6631.t2 is derived from g4074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6632.t1 is derived from g4075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32801924	32802326	.	-	.	Ledus.S1G405300
Ledus.S1	AUGUSTUS	transcript	32801924	32802326	.	-	.	transcript_id "Ledus.S1G405300.t1"; gene_id "Ledus.S1G405300"
Ledus.S1	AUGUSTUS	stop_codon	32801921	32801923	.	-	0	transcript_id "Ledus.S1G405300.t1"; gene_id "Ledus.S1G405300"
Ledus.S1	AUGUSTUS	CDS	32801924	32802115	0.7	-	0	transcript_id "Ledus.S1G405300.t1"; gene_id "Ledus.S1G405300"
Ledus.S1	AUGUSTUS	exon	32801924	32802115	.	-	.	transcript_id "Ledus.S1G405300.t1"; gene_id "Ledus.S1G405300"
Ledus.S1	AUGUSTUS	intron	32802116	32802200	.	-	.	transcript_id "Ledus.S1G405300.t1"; gene_id "Ledus.S1G405300"
Ledus.S1	AUGUSTUS	CDS	32802201	32802326	0.7	-	0	transcript_id "Ledus.S1G405300.t1"; gene_id "Ledus.S1G405300"
Ledus.S1	AUGUSTUS	exon	32802201	32802326	.	-	.	transcript_id "Ledus.S1G405300.t1"; gene_id "Ledus.S1G405300"
Ledus.S1	AUGUSTUS	start_codon	32802324	32802326	.	-	0	transcript_id "Ledus.S1G405300.t1"; gene_id "Ledus.S1G405300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4038.t1 is derived from g1474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14279984	14281796	.	-	.	Ledus.S1G145900
Ledus.S1	AUGUSTUS	transcript	14279984	14281796	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	stop_codon	14279981	14279983	.	-	0	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	CDS	14279984	14280082	1	-	0	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	exon	14279984	14280082	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	intron	14280083	14280172	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	CDS	14280173	14280322	1	-	0	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	exon	14280173	14280322	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	intron	14280323	14280412	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	CDS	14280413	14280505	1	-	0	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	exon	14280413	14280505	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	intron	14280506	14280579	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	CDS	14280580	14280694	1	-	1	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	exon	14280580	14280694	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	intron	14280695	14280810	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	CDS	14280811	14281061	0.99	-	0	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	exon	14280811	14281061	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	intron	14281062	14281167	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	CDS	14281168	14281354	0.93	-	1	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	exon	14281168	14281354	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	intron	14281355	14281446	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	CDS	14281447	14281796	1	-	0	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	exon	14281447	14281796	.	-	.	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
Ledus.S1	AUGUSTUS	start_codon	14281794	14281796	.	-	0	transcript_id "Ledus.S1G145900.t1"; gene_id "Ledus.S1G145900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5242.t1 is derived from g2681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22638785	22643113	.	-	.	Ledus.S1G266300
Ledus.S1	AUGUSTUS	transcript	22638785	22643113	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	stop_codon	22638782	22638784	.	-	0	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22638785	22638864	0.64	-	2	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22638785	22638864	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22638865	22638963	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22638964	22639076	0.64	-	1	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22638964	22639076	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22639077	22639173	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22639174	22639255	0.81	-	2	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22639174	22639255	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22639256	22639339	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22639340	22639491	0.84	-	1	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22639340	22639491	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22639492	22639569	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22639570	22639666	0.94	-	2	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22639570	22639666	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22639667	22639763	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22639764	22639896	0.91	-	0	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22639764	22639896	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22639897	22639978	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22639979	22640085	1	-	2	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22639979	22640085	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22640086	22640175	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22640176	22640461	0.69	-	0	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22640176	22640461	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22640462	22640867	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22640868	22641052	0.51	-	2	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22640868	22641052	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22641053	22641267	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22641268	22641329	0.99	-	1	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22641268	22641329	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22641330	22641441	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22641442	22641520	0.85	-	2	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22641442	22641520	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22641521	22641644	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22641645	22641738	0.99	-	0	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22641645	22641738	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22641739	22641810	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22641811	22641910	1	-	1	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22641811	22641910	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22641911	22641995	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22641996	22642069	0.62	-	0	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22641996	22642069	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22642070	22642499	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22642500	22642594	0.58	-	2	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22642500	22642594	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22642595	22642746	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22642747	22642805	0.94	-	1	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22642747	22642805	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22642806	22642895	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22642896	22642964	0.96	-	1	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22642896	22642964	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	intron	22642965	22643060	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	CDS	22643061	22643113	0.9	-	0	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	exon	22643061	22643113	.	-	.	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
Ledus.S1	AUGUSTUS	start_codon	22643111	22643113	.	-	0	transcript_id "Ledus.S1G266300.t1"; gene_id "Ledus.S1G266300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2099.t1 is derived from g8962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14716324	14718200	.	-	.	Ledus.S2G198100
Ledus.S2	AUGUSTUS	transcript	14716324	14718200	.	-	.	transcript_id "Ledus.S2G198100.t1"; gene_id "Ledus.S2G198100"
Ledus.S2	AUGUSTUS	stop_codon	14716321	14716323	.	-	0	transcript_id "Ledus.S2G198100.t1"; gene_id "Ledus.S2G198100"
Ledus.S2	AUGUSTUS	CDS	14716324	14717015	0.89	-	2	transcript_id "Ledus.S2G198100.t1"; gene_id "Ledus.S2G198100"
Ledus.S2	AUGUSTUS	exon	14716324	14717015	.	-	.	transcript_id "Ledus.S2G198100.t1"; gene_id "Ledus.S2G198100"
Ledus.S2	AUGUSTUS	intron	14717016	14717096	.	-	.	transcript_id "Ledus.S2G198100.t1"; gene_id "Ledus.S2G198100"
Ledus.S2	AUGUSTUS	CDS	14717097	14717508	0.89	-	0	transcript_id "Ledus.S2G198100.t1"; gene_id "Ledus.S2G198100"
Ledus.S2	AUGUSTUS	exon	14717097	14717508	.	-	.	transcript_id "Ledus.S2G198100.t1"; gene_id "Ledus.S2G198100"
Ledus.S2	AUGUSTUS	intron	14717509	14717591	.	-	.	transcript_id "Ledus.S2G198100.t1"; gene_id "Ledus.S2G198100"
Ledus.S2	AUGUSTUS	CDS	14717592	14718200	0.73	-	0	transcript_id "Ledus.S2G198100.t1"; gene_id "Ledus.S2G198100"
Ledus.S2	AUGUSTUS	exon	14717592	14718200	.	-	.	transcript_id "Ledus.S2G198100.t1"; gene_id "Ledus.S2G198100"
Ledus.S2	AUGUSTUS	start_codon	14718198	14718200	.	-	0	transcript_id "Ledus.S2G198100.t1"; gene_id "Ledus.S2G198100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8894.t1 is derived from g9924.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2925546	2925869	.	+	.	Ledus.S3G037100
Ledus.S3	AUGUSTUS	transcript	2925546	2925869	.	+	.	transcript_id "Ledus.S3G037100.t1"; gene_id "Ledus.S3G037100"
Ledus.S3	AUGUSTUS	start_codon	2925546	2925548	.	+	0	transcript_id "Ledus.S3G037100.t1"; gene_id "Ledus.S3G037100"
Ledus.S3	AUGUSTUS	CDS	2925546	2925869	0.2	+	0	transcript_id "Ledus.S3G037100.t1"; gene_id "Ledus.S3G037100"
Ledus.S3	AUGUSTUS	exon	2925546	2925869	.	+	.	transcript_id "Ledus.S3G037100.t1"; gene_id "Ledus.S3G037100"
Ledus.S3	AUGUSTUS	stop_codon	2925870	2925872	.	+	0	transcript_id "Ledus.S3G037100.t1"; gene_id "Ledus.S3G037100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7876.t1 is derived from g12547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7568378	7569573	.	+	.	Ledus.S5G065400
Ledus.S5	AUGUSTUS	transcript	7568378	7569573	.	+	.	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	start_codon	7568378	7568380	.	+	0	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	CDS	7568378	7568419	0.43	+	0	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	exon	7568378	7568419	.	+	.	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	intron	7568420	7568496	.	+	.	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	CDS	7568497	7568527	0.73	+	0	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	exon	7568497	7568527	.	+	.	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	intron	7568528	7568674	.	+	.	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	CDS	7568675	7568685	0.71	+	2	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	exon	7568675	7568685	.	+	.	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	intron	7568686	7568773	.	+	.	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	CDS	7568774	7568793	0.47	+	0	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	exon	7568774	7568793	.	+	.	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	intron	7568794	7569377	.	+	.	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	CDS	7569378	7569573	0.47	+	1	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	exon	7569378	7569573	.	+	.	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
Ledus.S5	AUGUSTUS	stop_codon	7569574	7569576	.	+	0	transcript_id "Ledus.S5G065400.t1"; gene_id "Ledus.S5G065400"
# This transcript jg12210.t2 is derived from g5829.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12211.t1 is derived from g5830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10406216	10406652	.	+	.	Ledus.S4G136700
Ledus.S4	AUGUSTUS	transcript	10406216	10406652	.	+	.	transcript_id "Ledus.S4G136700.t1"; gene_id "Ledus.S4G136700"
Ledus.S4	AUGUSTUS	start_codon	10406216	10406218	.	+	0	transcript_id "Ledus.S4G136700.t1"; gene_id "Ledus.S4G136700"
Ledus.S4	AUGUSTUS	CDS	10406216	10406501	0.76	+	0	transcript_id "Ledus.S4G136700.t1"; gene_id "Ledus.S4G136700"
Ledus.S4	AUGUSTUS	exon	10406216	10406501	.	+	.	transcript_id "Ledus.S4G136700.t1"; gene_id "Ledus.S4G136700"
Ledus.S4	AUGUSTUS	intron	10406502	10406596	.	+	.	transcript_id "Ledus.S4G136700.t1"; gene_id "Ledus.S4G136700"
Ledus.S4	AUGUSTUS	CDS	10406597	10406652	0.79	+	2	transcript_id "Ledus.S4G136700.t1"; gene_id "Ledus.S4G136700"
Ledus.S4	AUGUSTUS	exon	10406597	10406652	.	+	.	transcript_id "Ledus.S4G136700.t1"; gene_id "Ledus.S4G136700"
Ledus.S4	AUGUSTUS	stop_codon	10406653	10406655	.	+	0	transcript_id "Ledus.S4G136700.t1"; gene_id "Ledus.S4G136700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2220.t1 is derived from g9083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16146627	16147256	.	-	.	Ledus.S2G210200
Ledus.S2	AUGUSTUS	transcript	16146627	16147256	.	-	.	transcript_id "Ledus.S2G210200.t1"; gene_id "Ledus.S2G210200"
Ledus.S2	AUGUSTUS	stop_codon	16146624	16146626	.	-	0	transcript_id "Ledus.S2G210200.t1"; gene_id "Ledus.S2G210200"
Ledus.S2	AUGUSTUS	CDS	16146627	16147256	0.88	-	0	transcript_id "Ledus.S2G210200.t1"; gene_id "Ledus.S2G210200"
Ledus.S2	AUGUSTUS	exon	16146627	16147256	.	-	.	transcript_id "Ledus.S2G210200.t1"; gene_id "Ledus.S2G210200"
Ledus.S2	AUGUSTUS	start_codon	16147254	16147256	.	-	0	transcript_id "Ledus.S2G210200.t1"; gene_id "Ledus.S2G210200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg895.t1 is derived from g7756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6003797	6008865	.	+	.	Ledus.S2G077700
Ledus.S2	AUGUSTUS	transcript	6003797	6008865	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	start_codon	6003797	6003799	.	+	0	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6003797	6003816	0.99	+	0	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6003797	6003816	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6003817	6003976	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6003977	6004127	1	+	1	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6003977	6004127	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6004128	6004279	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6004280	6004425	1	+	0	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6004280	6004425	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6004426	6004628	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6004629	6004648	1	+	1	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6004629	6004648	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6004649	6004884	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6004885	6005025	1	+	2	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6004885	6005025	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6005026	6005238	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6005239	6005301	0.93	+	2	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6005239	6005301	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6005302	6005408	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6005409	6005499	0.98	+	2	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6005409	6005499	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6005500	6005624	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6005625	6005811	0.99	+	1	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6005625	6005811	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6005812	6005898	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6005899	6006114	0.84	+	0	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6005899	6006114	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6006115	6006214	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6006215	6006346	0.82	+	0	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6006215	6006346	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6006347	6006491	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6006492	6006539	1	+	0	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6006492	6006539	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6006540	6006619	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6006620	6006868	1	+	0	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6006620	6006868	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6006869	6006960	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6006961	6007064	1	+	0	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6006961	6007064	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6007065	6007241	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6007242	6007406	1	+	1	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6007242	6007406	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6007407	6007488	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6007489	6007627	1	+	1	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6007489	6007627	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6007628	6007746	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6007747	6007863	1	+	0	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6007747	6007863	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6007864	6007949	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6007950	6008216	0.81	+	0	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6007950	6008216	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6008217	6008289	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6008290	6008378	0.96	+	0	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6008290	6008378	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6008379	6008469	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6008470	6008631	1	+	1	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6008470	6008631	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	intron	6008632	6008729	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	CDS	6008730	6008865	1	+	1	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	exon	6008730	6008865	.	+	.	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
Ledus.S2	AUGUSTUS	stop_codon	6008866	6008868	.	+	0	transcript_id "Ledus.S2G077700.t1"; gene_id "Ledus.S2G077700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3811.t1 is derived from g1247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12529323	12529726	.	+	.	Ledus.S1G123200
Ledus.S1	AUGUSTUS	transcript	12529323	12529726	.	+	.	transcript_id "Ledus.S1G123200.t1"; gene_id "Ledus.S1G123200"
Ledus.S1	AUGUSTUS	start_codon	12529323	12529325	.	+	0	transcript_id "Ledus.S1G123200.t1"; gene_id "Ledus.S1G123200"
Ledus.S1	AUGUSTUS	CDS	12529323	12529356	0.81	+	0	transcript_id "Ledus.S1G123200.t1"; gene_id "Ledus.S1G123200"
Ledus.S1	AUGUSTUS	exon	12529323	12529356	.	+	.	transcript_id "Ledus.S1G123200.t1"; gene_id "Ledus.S1G123200"
Ledus.S1	AUGUSTUS	intron	12529357	12529451	.	+	.	transcript_id "Ledus.S1G123200.t1"; gene_id "Ledus.S1G123200"
Ledus.S1	AUGUSTUS	CDS	12529452	12529726	0.99	+	2	transcript_id "Ledus.S1G123200.t1"; gene_id "Ledus.S1G123200"
Ledus.S1	AUGUSTUS	exon	12529452	12529726	.	+	.	transcript_id "Ledus.S1G123200.t1"; gene_id "Ledus.S1G123200"
Ledus.S1	AUGUSTUS	stop_codon	12529727	12529729	.	+	0	transcript_id "Ledus.S1G123200.t1"; gene_id "Ledus.S1G123200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12796.t1 is derived from g6418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14665918	14666193	.	+	.	Ledus.S4G195200
Ledus.S4	AUGUSTUS	transcript	14665918	14666193	.	+	.	transcript_id "Ledus.S4G195200.t1"; gene_id "Ledus.S4G195200"
Ledus.S4	AUGUSTUS	start_codon	14665918	14665920	.	+	0	transcript_id "Ledus.S4G195200.t1"; gene_id "Ledus.S4G195200"
Ledus.S4	AUGUSTUS	CDS	14665918	14666193	0.64	+	0	transcript_id "Ledus.S4G195200.t1"; gene_id "Ledus.S4G195200"
Ledus.S4	AUGUSTUS	exon	14665918	14666193	.	+	.	transcript_id "Ledus.S4G195200.t1"; gene_id "Ledus.S4G195200"
Ledus.S4	AUGUSTUS	stop_codon	14666194	14666196	.	+	0	transcript_id "Ledus.S4G195200.t1"; gene_id "Ledus.S4G195200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11238.t1 is derived from g4856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2866943	2868624	.	-	.	Ledus.S4G039400
Ledus.S4	AUGUSTUS	transcript	2866943	2868624	.	-	.	transcript_id "Ledus.S4G039400.t1"; gene_id "Ledus.S4G039400"
Ledus.S4	AUGUSTUS	stop_codon	2866940	2866942	.	-	0	transcript_id "Ledus.S4G039400.t1"; gene_id "Ledus.S4G039400"
Ledus.S4	AUGUSTUS	CDS	2866943	2868412	1	-	0	transcript_id "Ledus.S4G039400.t1"; gene_id "Ledus.S4G039400"
Ledus.S4	AUGUSTUS	exon	2866943	2868412	.	-	.	transcript_id "Ledus.S4G039400.t1"; gene_id "Ledus.S4G039400"
Ledus.S4	AUGUSTUS	intron	2868413	2868513	.	-	.	transcript_id "Ledus.S4G039400.t1"; gene_id "Ledus.S4G039400"
Ledus.S4	AUGUSTUS	CDS	2868514	2868624	0.99	-	0	transcript_id "Ledus.S4G039400.t1"; gene_id "Ledus.S4G039400"
Ledus.S4	AUGUSTUS	exon	2868514	2868624	.	-	.	transcript_id "Ledus.S4G039400.t1"; gene_id "Ledus.S4G039400"
Ledus.S4	AUGUSTUS	start_codon	2868622	2868624	.	-	0	transcript_id "Ledus.S4G039400.t1"; gene_id "Ledus.S4G039400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10311.t1 is derived from g11341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14186418	14186828	.	+	.	Ledus.S3G178800
Ledus.S3	AUGUSTUS	transcript	14186418	14186828	.	+	.	transcript_id "Ledus.S3G178800.t1"; gene_id "Ledus.S3G178800"
Ledus.S3	AUGUSTUS	start_codon	14186418	14186420	.	+	0	transcript_id "Ledus.S3G178800.t1"; gene_id "Ledus.S3G178800"
Ledus.S3	AUGUSTUS	CDS	14186418	14186828	0.24	+	0	transcript_id "Ledus.S3G178800.t1"; gene_id "Ledus.S3G178800"
Ledus.S3	AUGUSTUS	exon	14186418	14186828	.	+	.	transcript_id "Ledus.S3G178800.t1"; gene_id "Ledus.S3G178800"
Ledus.S3	AUGUSTUS	stop_codon	14186829	14186831	.	+	0	transcript_id "Ledus.S3G178800.t1"; gene_id "Ledus.S3G178800"
# This transcript jg670.t2 is derived from g7531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg671.t1 is derived from g7532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4003817	4008900	.	-	.	Ledus.S2G055300
Ledus.S2	AUGUSTUS	transcript	4003817	4008900	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	stop_codon	4003814	4003816	.	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4003817	4003919	1	-	1	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4003817	4003919	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4003920	4004126	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4004127	4004219	1	-	1	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4004127	4004219	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4004220	4004428	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4004429	4004508	1	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4004429	4004508	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4004509	4004633	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4004634	4004735	1	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4004634	4004735	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4004736	4004831	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4004832	4004975	1	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4004832	4004975	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4004976	4005181	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4005182	4005289	1	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4005182	4005289	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4005290	4005510	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4005511	4005588	1	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4005511	4005588	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4005589	4005685	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4005686	4005805	1	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4005686	4005805	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4005806	4006011	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4006012	4006143	1	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4006012	4006143	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4006144	4006462	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4006463	4006555	1	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4006463	4006555	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4006556	4006744	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4006745	4006910	1	-	1	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4006745	4006910	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4006911	4007150	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4007151	4007209	1	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4007151	4007209	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4007210	4007304	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4007305	4007399	1	-	2	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4007305	4007399	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4007400	4007520	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4007521	4007630	1	-	1	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4007521	4007630	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4007631	4007732	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4007733	4007821	1	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4007733	4007821	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4007822	4007952	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4007953	4008102	1	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4007953	4008102	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4008103	4008263	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4008264	4008358	1	-	2	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4008264	4008358	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4008359	4008449	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4008450	4008560	1	-	2	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4008450	4008560	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	intron	4008561	4008776	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	CDS	4008777	4008900	0.42	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	exon	4008777	4008900	.	-	.	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
Ledus.S2	AUGUSTUS	start_codon	4008898	4008900	.	-	0	transcript_id "Ledus.S2G055300.t1"; gene_id "Ledus.S2G055300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1386.t1 is derived from g8247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9724629	9725811	.	+	.	Ledus.S2G126800
Ledus.S2	AUGUSTUS	transcript	9724629	9725811	.	+	.	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	start_codon	9724629	9724631	.	+	0	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	CDS	9724629	9724707	0.39	+	0	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	exon	9724629	9724707	.	+	.	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	intron	9724708	9724869	.	+	.	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	CDS	9724870	9724998	1	+	2	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	exon	9724870	9724998	.	+	.	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	intron	9724999	9725080	.	+	.	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	CDS	9725081	9725118	1	+	2	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	exon	9725081	9725118	.	+	.	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	intron	9725119	9725204	.	+	.	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	CDS	9725205	9725255	1	+	0	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	exon	9725205	9725255	.	+	.	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	intron	9725256	9725333	.	+	.	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	CDS	9725334	9725501	1	+	0	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	exon	9725334	9725501	.	+	.	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	intron	9725502	9725583	.	+	.	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	CDS	9725584	9725811	1	+	0	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	exon	9725584	9725811	.	+	.	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
Ledus.S2	AUGUSTUS	stop_codon	9725812	9725814	.	+	0	transcript_id "Ledus.S2G126800.t1"; gene_id "Ledus.S2G126800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6479.t1 is derived from g3922.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31526000	31529755	.	+	.	Ledus.S1G390000
Ledus.S1	AUGUSTUS	transcript	31526000	31529755	.	+	.	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	start_codon	31526000	31526002	.	+	0	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	CDS	31526000	31526113	0.96	+	0	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	exon	31526000	31526113	.	+	.	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	intron	31526114	31526288	.	+	.	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	CDS	31526289	31526482	0.99	+	0	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	exon	31526289	31526482	.	+	.	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	intron	31526483	31526617	.	+	.	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	CDS	31526618	31529330	0.75	+	1	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	exon	31526618	31529330	.	+	.	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	intron	31529331	31529417	.	+	.	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	CDS	31529418	31529480	0.65	+	0	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	exon	31529418	31529480	.	+	.	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	intron	31529481	31529644	.	+	.	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	CDS	31529645	31529755	0.94	+	0	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	exon	31529645	31529755	.	+	.	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	stop_codon	31529756	31529758	.	+	0	transcript_id "Ledus.S1G390000.t1"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	transcript	31526049	31529755	.	+	.	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	start_codon	31526049	31526051	.	+	0	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	CDS	31526049	31526113	0.99	+	0	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	exon	31526049	31526113	.	+	.	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	intron	31526114	31526299	.	+	.	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	CDS	31526300	31526482	0.99	+	1	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	exon	31526300	31526482	.	+	.	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	intron	31526483	31526617	.	+	.	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	CDS	31526618	31529330	0.73	+	1	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	exon	31526618	31529330	.	+	.	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	intron	31529331	31529417	.	+	.	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	CDS	31529418	31529480	0.65	+	0	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	exon	31529418	31529480	.	+	.	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	intron	31529481	31529644	.	+	.	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	CDS	31529645	31529755	0.91	+	0	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	exon	31529645	31529755	.	+	.	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
Ledus.S1	AUGUSTUS	stop_codon	31529756	31529758	.	+	0	transcript_id "Ledus.S1G390000.t2"; gene_id "Ledus.S1G390000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10725.t1 is derived from g11755.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17382739	17385544	.	-	.	Ledus.S3G220200
Ledus.S3	AUGUSTUS	transcript	17382739	17385544	.	-	.	transcript_id "Ledus.S3G220200.t1"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	stop_codon	17382736	17382738	.	-	0	transcript_id "Ledus.S3G220200.t1"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	CDS	17382739	17383925	0.74	-	2	transcript_id "Ledus.S3G220200.t1"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	exon	17382739	17383925	.	-	.	transcript_id "Ledus.S3G220200.t1"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	intron	17383926	17384035	.	-	.	transcript_id "Ledus.S3G220200.t1"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	CDS	17384036	17384951	0.99	-	0	transcript_id "Ledus.S3G220200.t1"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	exon	17384036	17384951	.	-	.	transcript_id "Ledus.S3G220200.t1"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	intron	17384952	17385160	.	-	.	transcript_id "Ledus.S3G220200.t1"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	CDS	17385161	17385544	0.96	-	0	transcript_id "Ledus.S3G220200.t1"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	exon	17385161	17385544	.	-	.	transcript_id "Ledus.S3G220200.t1"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	start_codon	17385542	17385544	.	-	0	transcript_id "Ledus.S3G220200.t1"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	transcript	17382739	17385544	.	-	.	transcript_id "Ledus.S3G220200.t2"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	stop_codon	17382736	17382738	.	-	0	transcript_id "Ledus.S3G220200.t2"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	CDS	17382739	17383925	0.67	-	2	transcript_id "Ledus.S3G220200.t2"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	exon	17382739	17383925	.	-	.	transcript_id "Ledus.S3G220200.t2"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	intron	17383926	17384035	.	-	.	transcript_id "Ledus.S3G220200.t2"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	CDS	17384036	17385035	0.75	-	0	transcript_id "Ledus.S3G220200.t2"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	exon	17384036	17385035	.	-	.	transcript_id "Ledus.S3G220200.t2"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	intron	17385036	17385160	.	-	.	transcript_id "Ledus.S3G220200.t2"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	CDS	17385161	17385544	0.97	-	0	transcript_id "Ledus.S3G220200.t2"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	exon	17385161	17385544	.	-	.	transcript_id "Ledus.S3G220200.t2"; gene_id "Ledus.S3G220200"
Ledus.S3	AUGUSTUS	start_codon	17385542	17385544	.	-	0	transcript_id "Ledus.S3G220200.t2"; gene_id "Ledus.S3G220200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg715.t1 is derived from g7576.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4425423	4429547	.	-	.	Ledus.S2G059700
Ledus.S2	AUGUSTUS	transcript	4425423	4429547	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	stop_codon	4425420	4425422	.	-	0	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4425423	4425557	1	-	0	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4425423	4425557	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4425558	4425649	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4425650	4425717	1	-	2	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4425650	4425717	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4425718	4425796	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4425797	4425878	1	-	0	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4425797	4425878	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4425879	4425961	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4425962	4426117	1	-	0	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4425962	4426117	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4426118	4426214	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4426215	4426278	1	-	1	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4426215	4426278	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4426279	4426367	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4426368	4426456	1	-	0	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4426368	4426456	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4426457	4426598	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4426599	4426674	1	-	1	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4426599	4426674	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4426675	4426812	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4426813	4426911	1	-	1	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4426813	4426911	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4426912	4427005	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4427006	4427121	1	-	0	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4427006	4427121	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4427122	4427208	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4427209	4427321	1	-	2	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4427209	4427321	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4427322	4427422	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4427423	4427483	0.88	-	0	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4427423	4427483	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4427484	4427627	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4427628	4427687	1	-	0	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4427628	4427687	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4427688	4427818	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4427819	4427892	0.96	-	2	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4427819	4427892	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4427893	4428013	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4428014	4428085	0.69	-	2	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4428014	4428085	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4428086	4428352	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4428353	4428439	0.45	-	2	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4428353	4428439	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4428440	4428838	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4428839	4428906	0.81	-	1	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4428839	4428906	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4428907	4429006	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4429007	4429126	0.99	-	1	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4429007	4429126	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	intron	4429127	4429356	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	CDS	4429357	4429547	0.76	-	0	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	exon	4429357	4429547	.	-	.	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
Ledus.S2	AUGUSTUS	start_codon	4429545	4429547	.	-	0	transcript_id "Ledus.S2G059700.t1"; gene_id "Ledus.S2G059700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7740.t1 is derived from g12411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5874320	5874574	.	-	.	Ledus.S5G051800
Ledus.S5	AUGUSTUS	transcript	5874320	5874574	.	-	.	transcript_id "Ledus.S5G051800.t1"; gene_id "Ledus.S5G051800"
Ledus.S5	AUGUSTUS	stop_codon	5874317	5874319	.	-	0	transcript_id "Ledus.S5G051800.t1"; gene_id "Ledus.S5G051800"
Ledus.S5	AUGUSTUS	CDS	5874320	5874574	0.96	-	0	transcript_id "Ledus.S5G051800.t1"; gene_id "Ledus.S5G051800"
Ledus.S5	AUGUSTUS	exon	5874320	5874574	.	-	.	transcript_id "Ledus.S5G051800.t1"; gene_id "Ledus.S5G051800"
Ledus.S5	AUGUSTUS	start_codon	5874572	5874574	.	-	0	transcript_id "Ledus.S5G051800.t1"; gene_id "Ledus.S5G051800"
# This transcript jg6493.t2 is derived from g3936.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6494.t1 is derived from g3937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31621961	31623088	.	+	.	Ledus.S1G391500
Ledus.S1	AUGUSTUS	transcript	31621961	31623088	.	+	.	transcript_id "Ledus.S1G391500.t1"; gene_id "Ledus.S1G391500"
Ledus.S1	AUGUSTUS	start_codon	31621961	31621963	.	+	0	transcript_id "Ledus.S1G391500.t1"; gene_id "Ledus.S1G391500"
Ledus.S1	AUGUSTUS	CDS	31621961	31623088	0.96	+	0	transcript_id "Ledus.S1G391500.t1"; gene_id "Ledus.S1G391500"
Ledus.S1	AUGUSTUS	exon	31621961	31623088	.	+	.	transcript_id "Ledus.S1G391500.t1"; gene_id "Ledus.S1G391500"
Ledus.S1	AUGUSTUS	stop_codon	31623089	31623091	.	+	0	transcript_id "Ledus.S1G391500.t1"; gene_id "Ledus.S1G391500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7920.t1 is derived from g12591.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7848976	7849305	.	-	.	Ledus.S5G069800
Ledus.S5	AUGUSTUS	transcript	7848976	7849305	.	-	.	transcript_id "Ledus.S5G069800.t1"; gene_id "Ledus.S5G069800"
Ledus.S5	AUGUSTUS	stop_codon	7848973	7848975	.	-	0	transcript_id "Ledus.S5G069800.t1"; gene_id "Ledus.S5G069800"
Ledus.S5	AUGUSTUS	CDS	7848976	7849305	0.22	-	0	transcript_id "Ledus.S5G069800.t1"; gene_id "Ledus.S5G069800"
Ledus.S5	AUGUSTUS	exon	7848976	7849305	.	-	.	transcript_id "Ledus.S5G069800.t1"; gene_id "Ledus.S5G069800"
Ledus.S5	AUGUSTUS	start_codon	7849303	7849305	.	-	0	transcript_id "Ledus.S5G069800.t1"; gene_id "Ledus.S5G069800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7342.t1 is derived from g12013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1285010	1287644	.	+	.	Ledus.S5G012000
Ledus.S5	AUGUSTUS	transcript	1285010	1287644	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	start_codon	1285010	1285012	.	+	0	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	CDS	1285010	1285504	0.86	+	0	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	exon	1285010	1285504	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	intron	1285505	1285640	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	CDS	1285641	1285709	1	+	0	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	exon	1285641	1285709	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	intron	1285710	1285876	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	CDS	1285877	1286471	0.92	+	0	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	exon	1285877	1286471	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	intron	1286472	1286683	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	CDS	1286684	1286915	0.46	+	2	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	exon	1286684	1286915	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	intron	1286916	1287008	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	CDS	1287009	1287069	0.86	+	1	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	exon	1287009	1287069	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	intron	1287070	1287215	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	CDS	1287216	1287442	1	+	0	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	exon	1287216	1287442	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	intron	1287443	1287598	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	CDS	1287599	1287644	0.99	+	1	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	exon	1287599	1287644	.	+	.	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
Ledus.S5	AUGUSTUS	stop_codon	1287645	1287647	.	+	0	transcript_id "Ledus.S5G012000.t1"; gene_id "Ledus.S5G012000"
# This transcript jg11776.t2 is derived from g5395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11777.t1 is derived from g5396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6733175	6733708	.	-	.	Ledus.S4G093300
Ledus.S4	AUGUSTUS	transcript	6733175	6733708	.	-	.	transcript_id "Ledus.S4G093300.t1"; gene_id "Ledus.S4G093300"
Ledus.S4	AUGUSTUS	stop_codon	6733172	6733174	.	-	0	transcript_id "Ledus.S4G093300.t1"; gene_id "Ledus.S4G093300"
Ledus.S4	AUGUSTUS	CDS	6733175	6733379	0.59	-	1	transcript_id "Ledus.S4G093300.t1"; gene_id "Ledus.S4G093300"
Ledus.S4	AUGUSTUS	exon	6733175	6733379	.	-	.	transcript_id "Ledus.S4G093300.t1"; gene_id "Ledus.S4G093300"
Ledus.S4	AUGUSTUS	intron	6733380	6733462	.	-	.	transcript_id "Ledus.S4G093300.t1"; gene_id "Ledus.S4G093300"
Ledus.S4	AUGUSTUS	CDS	6733463	6733596	0.94	-	0	transcript_id "Ledus.S4G093300.t1"; gene_id "Ledus.S4G093300"
Ledus.S4	AUGUSTUS	exon	6733463	6733596	.	-	.	transcript_id "Ledus.S4G093300.t1"; gene_id "Ledus.S4G093300"
Ledus.S4	AUGUSTUS	intron	6733597	6733669	.	-	.	transcript_id "Ledus.S4G093300.t1"; gene_id "Ledus.S4G093300"
Ledus.S4	AUGUSTUS	CDS	6733670	6733708	0.93	-	0	transcript_id "Ledus.S4G093300.t1"; gene_id "Ledus.S4G093300"
Ledus.S4	AUGUSTUS	exon	6733670	6733708	.	-	.	transcript_id "Ledus.S4G093300.t1"; gene_id "Ledus.S4G093300"
Ledus.S4	AUGUSTUS	start_codon	6733706	6733708	.	-	0	transcript_id "Ledus.S4G093300.t1"; gene_id "Ledus.S4G093300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5062.t1 is derived from g2501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21389263	21394497	.	+	.	Ledus.S1G248300
Ledus.S1	AUGUSTUS	transcript	21389263	21394497	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	start_codon	21389263	21389265	.	+	0	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	CDS	21389263	21390144	0.92	+	0	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	exon	21389263	21390144	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	intron	21390145	21390284	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	CDS	21390285	21390824	0.93	+	0	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	exon	21390285	21390824	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	intron	21390825	21390964	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	CDS	21390965	21391285	1	+	0	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	exon	21390965	21391285	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	intron	21391286	21391407	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	CDS	21391408	21391494	0.96	+	0	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	exon	21391408	21391494	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	intron	21391495	21391620	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	CDS	21391621	21392376	0.96	+	0	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	exon	21391621	21392376	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	intron	21392377	21392488	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	CDS	21392489	21392653	0.35	+	0	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	exon	21392489	21392653	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	intron	21392654	21392761	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	CDS	21392762	21393056	0.69	+	0	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	exon	21392762	21393056	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	intron	21393057	21393152	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	CDS	21393153	21393367	1	+	2	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	exon	21393153	21393367	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	intron	21393368	21393478	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	CDS	21393479	21393784	0.94	+	0	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	exon	21393479	21393784	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	intron	21393785	21393889	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	CDS	21393890	21393953	0.98	+	0	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	exon	21393890	21393953	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	intron	21393954	21394053	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	CDS	21394054	21394293	0.99	+	2	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	exon	21394054	21394293	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	intron	21394294	21394396	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	CDS	21394397	21394497	0.98	+	2	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	exon	21394397	21394497	.	+	.	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
Ledus.S1	AUGUSTUS	stop_codon	21394498	21394500	.	+	0	transcript_id "Ledus.S1G248300.t1"; gene_id "Ledus.S1G248300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3082.t1 is derived from g517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5790005	5791490	.	-	.	Ledus.S1G050300
Ledus.S1	AUGUSTUS	transcript	5790005	5791490	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	stop_codon	5790002	5790004	.	-	0	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	CDS	5790005	5790086	0.97	-	1	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	exon	5790005	5790086	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	intron	5790087	5790179	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	CDS	5790180	5790251	1	-	1	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	exon	5790180	5790251	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	intron	5790252	5790399	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	CDS	5790400	5790471	1	-	1	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	exon	5790400	5790471	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	intron	5790472	5790621	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	CDS	5790622	5790765	1	-	1	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	exon	5790622	5790765	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	intron	5790766	5790895	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	CDS	5790896	5790967	1	-	1	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	exon	5790896	5790967	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	intron	5790968	5791080	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	CDS	5791081	5791213	1	-	2	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	exon	5791081	5791213	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	intron	5791214	5791417	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	CDS	5791418	5791490	0.6	-	0	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	exon	5791418	5791490	.	-	.	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
Ledus.S1	AUGUSTUS	start_codon	5791488	5791490	.	-	0	transcript_id "Ledus.S1G050300.t1"; gene_id "Ledus.S1G050300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9401.t1 is derived from g10431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6559579	6561703	.	-	.	Ledus.S3G087800
Ledus.S3	AUGUSTUS	transcript	6559579	6561703	.	-	.	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	stop_codon	6559576	6559578	.	-	0	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	CDS	6559579	6559878	1	-	0	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	exon	6559579	6559878	.	-	.	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	intron	6559879	6559972	.	-	.	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	CDS	6559973	6560140	1	-	0	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	exon	6559973	6560140	.	-	.	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	intron	6560141	6560258	.	-	.	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	CDS	6560259	6560390	0.98	-	0	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	exon	6560259	6560390	.	-	.	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	intron	6560391	6560469	.	-	.	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	CDS	6560470	6560552	1	-	2	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	exon	6560470	6560552	.	-	.	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	intron	6560553	6560634	.	-	.	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	CDS	6560635	6560827	1	-	0	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	exon	6560635	6560827	.	-	.	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	intron	6560828	6561436	.	-	.	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	CDS	6561437	6561703	0.84	-	0	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	exon	6561437	6561703	.	-	.	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
Ledus.S3	AUGUSTUS	start_codon	6561701	6561703	.	-	0	transcript_id "Ledus.S3G087800.t1"; gene_id "Ledus.S3G087800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3105.t1 is derived from g540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5921381	5928347	.	+	.	Ledus.S1G052600
Ledus.S1	AUGUSTUS	transcript	5921381	5928347	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	start_codon	5921381	5921383	.	+	0	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5921381	5921704	0.96	+	0	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5921381	5921704	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5921705	5921863	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5921864	5922134	0.94	+	0	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5921864	5922134	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5922135	5922218	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5922219	5922808	0.9	+	2	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5922219	5922808	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5922809	5922913	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5922914	5923240	0.99	+	0	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5922914	5923240	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5923241	5923320	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5923321	5924289	1	+	0	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5923321	5924289	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5924290	5924375	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5924376	5924718	1	+	0	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5924376	5924718	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5924719	5924817	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5924818	5925734	1	+	2	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5924818	5925734	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5925735	5925809	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5925810	5926290	0.34	+	0	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5925810	5926290	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5926291	5926381	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5926382	5926451	0.61	+	2	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5926382	5926451	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5926452	5926616	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5926617	5926740	0.62	+	1	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5926617	5926740	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5926741	5926828	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5926829	5926967	0.82	+	0	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5926829	5926967	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5926968	5927045	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5927046	5927105	0.2	+	2	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5927046	5927105	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5927106	5927293	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5927294	5927360	0.53	+	2	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5927294	5927360	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5927361	5927444	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5927445	5927857	1	+	1	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5927445	5927857	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	intron	5927858	5927937	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	CDS	5927938	5928347	0.73	+	2	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	exon	5927938	5928347	.	+	.	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
Ledus.S1	AUGUSTUS	stop_codon	5928348	5928350	.	+	0	transcript_id "Ledus.S1G052600.t1"; gene_id "Ledus.S1G052600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12656.t1 is derived from g6278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13629909	13630627	.	-	.	Ledus.S4G181200
Ledus.S4	AUGUSTUS	transcript	13629909	13630627	.	-	.	transcript_id "Ledus.S4G181200.t1"; gene_id "Ledus.S4G181200"
Ledus.S4	AUGUSTUS	stop_codon	13629906	13629908	.	-	0	transcript_id "Ledus.S4G181200.t1"; gene_id "Ledus.S4G181200"
Ledus.S4	AUGUSTUS	CDS	13629909	13630377	0.96	-	1	transcript_id "Ledus.S4G181200.t1"; gene_id "Ledus.S4G181200"
Ledus.S4	AUGUSTUS	exon	13629909	13630377	.	-	.	transcript_id "Ledus.S4G181200.t1"; gene_id "Ledus.S4G181200"
Ledus.S4	AUGUSTUS	intron	13630378	13630493	.	-	.	transcript_id "Ledus.S4G181200.t1"; gene_id "Ledus.S4G181200"
Ledus.S4	AUGUSTUS	CDS	13630494	13630627	0.76	-	0	transcript_id "Ledus.S4G181200.t1"; gene_id "Ledus.S4G181200"
Ledus.S4	AUGUSTUS	exon	13630494	13630627	.	-	.	transcript_id "Ledus.S4G181200.t1"; gene_id "Ledus.S4G181200"
Ledus.S4	AUGUSTUS	start_codon	13630625	13630627	.	-	0	transcript_id "Ledus.S4G181200.t1"; gene_id "Ledus.S4G181200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3690.t1 is derived from g1126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10920604	10920909	.	+	.	Ledus.S1G111100
Ledus.S1	AUGUSTUS	transcript	10920604	10920909	.	+	.	transcript_id "Ledus.S1G111100.t1"; gene_id "Ledus.S1G111100"
Ledus.S1	AUGUSTUS	start_codon	10920604	10920606	.	+	0	transcript_id "Ledus.S1G111100.t1"; gene_id "Ledus.S1G111100"
Ledus.S1	AUGUSTUS	CDS	10920604	10920909	1	+	0	transcript_id "Ledus.S1G111100.t1"; gene_id "Ledus.S1G111100"
Ledus.S1	AUGUSTUS	exon	10920604	10920909	.	+	.	transcript_id "Ledus.S1G111100.t1"; gene_id "Ledus.S1G111100"
Ledus.S1	AUGUSTUS	stop_codon	10920910	10920912	.	+	0	transcript_id "Ledus.S1G111100.t1"; gene_id "Ledus.S1G111100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3915.t1 is derived from g1351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13543174	13544274	.	-	.	Ledus.S1G133600
Ledus.S1	AUGUSTUS	transcript	13543174	13544274	.	-	.	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	stop_codon	13543171	13543173	.	-	0	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	CDS	13543174	13543309	0.99	-	1	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	exon	13543174	13543309	.	-	.	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	intron	13543310	13543412	.	-	.	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	CDS	13543413	13543659	0.97	-	2	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	exon	13543413	13543659	.	-	.	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	intron	13543660	13543814	.	-	.	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	CDS	13543815	13544054	1	-	2	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	exon	13543815	13544054	.	-	.	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	intron	13544055	13544141	.	-	.	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	CDS	13544142	13544274	0.98	-	0	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	exon	13544142	13544274	.	-	.	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
Ledus.S1	AUGUSTUS	start_codon	13544272	13544274	.	-	0	transcript_id "Ledus.S1G133600.t1"; gene_id "Ledus.S1G133600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5008.t1 is derived from g2446.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21110071	21112874	.	-	.	Ledus.S1G242900
Ledus.S1	AUGUSTUS	transcript	21110071	21112874	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	stop_codon	21110068	21110070	.	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21110071	21110166	1	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21110071	21110166	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21110167	21110241	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21110242	21110326	1	-	1	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21110242	21110326	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21110327	21110419	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21110420	21110487	1	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21110420	21110487	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21110488	21110571	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21110572	21110652	1	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21110572	21110652	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21110653	21110734	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21110735	21110825	1	-	1	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21110735	21110825	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21110826	21110902	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21110903	21110991	1	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21110903	21110991	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21110992	21111073	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21111074	21111127	1	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21111074	21111127	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21111128	21111209	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21111210	21111389	1	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21111210	21111389	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21111390	21111524	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21111525	21111587	1	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21111525	21111587	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21111588	21111705	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21111706	21111836	0.98	-	2	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21111706	21111836	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21111837	21111925	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21111926	21112007	1	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21111926	21112007	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21112008	21112080	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21112081	21112398	0.99	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21112081	21112398	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21112399	21112489	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21112490	21112555	0.85	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21112490	21112555	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21112556	21112745	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21112746	21112874	0.69	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21112746	21112874	.	-	.	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	start_codon	21112872	21112874	.	-	0	transcript_id "Ledus.S1G242900.t1"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	transcript	21110071	21112874	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	stop_codon	21110068	21110070	.	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21110071	21110166	1	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21110071	21110166	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21110167	21110241	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21110242	21110326	1	-	1	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21110242	21110326	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21110327	21110419	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21110420	21110487	1	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21110420	21110487	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21110488	21110571	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21110572	21110652	1	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21110572	21110652	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21110653	21110734	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21110735	21110825	1	-	1	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21110735	21110825	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21110826	21110902	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21110903	21110991	1	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21110903	21110991	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21110992	21111073	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21111074	21111127	1	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21111074	21111127	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21111128	21111209	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21111210	21111389	1	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21111210	21111389	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21111390	21111524	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21111525	21111587	1	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21111525	21111587	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21111588	21111705	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21111706	21111836	0.99	-	2	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21111706	21111836	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21111837	21111925	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21111926	21112007	1	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21111926	21112007	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21112008	21112080	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21112081	21112398	0.88	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21112081	21112398	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21112399	21112503	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21112504	21112641	0.81	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21112504	21112641	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	intron	21112642	21112745	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	CDS	21112746	21112874	0.61	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	exon	21112746	21112874	.	-	.	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
Ledus.S1	AUGUSTUS	start_codon	21112872	21112874	.	-	0	transcript_id "Ledus.S1G242900.t2"; gene_id "Ledus.S1G242900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2163.t1 is derived from g9026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15464129	15464876	.	-	.	Ledus.S2G204500
Ledus.S2	AUGUSTUS	transcript	15464129	15464876	.	-	.	transcript_id "Ledus.S2G204500.t1"; gene_id "Ledus.S2G204500"
Ledus.S2	AUGUSTUS	stop_codon	15464126	15464128	.	-	0	transcript_id "Ledus.S2G204500.t1"; gene_id "Ledus.S2G204500"
Ledus.S2	AUGUSTUS	CDS	15464129	15464419	0.91	-	0	transcript_id "Ledus.S2G204500.t1"; gene_id "Ledus.S2G204500"
Ledus.S2	AUGUSTUS	exon	15464129	15464419	.	-	.	transcript_id "Ledus.S2G204500.t1"; gene_id "Ledus.S2G204500"
Ledus.S2	AUGUSTUS	intron	15464420	15464522	.	-	.	transcript_id "Ledus.S2G204500.t1"; gene_id "Ledus.S2G204500"
Ledus.S2	AUGUSTUS	CDS	15464523	15464876	0.69	-	0	transcript_id "Ledus.S2G204500.t1"; gene_id "Ledus.S2G204500"
Ledus.S2	AUGUSTUS	exon	15464523	15464876	.	-	.	transcript_id "Ledus.S2G204500.t1"; gene_id "Ledus.S2G204500"
Ledus.S2	AUGUSTUS	start_codon	15464874	15464876	.	-	0	transcript_id "Ledus.S2G204500.t1"; gene_id "Ledus.S2G204500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg490.t1 is derived from g7351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2854958	2857285	.	-	.	Ledus.S2G037200
Ledus.S2	AUGUSTUS	transcript	2854958	2857285	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	stop_codon	2854955	2854957	.	-	0	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	CDS	2854958	2855069	1	-	1	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	exon	2854958	2855069	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	intron	2855070	2855183	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	CDS	2855184	2855230	1	-	0	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	exon	2855184	2855230	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	intron	2855231	2855343	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	CDS	2855344	2855382	1	-	0	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	exon	2855344	2855382	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	intron	2855383	2855530	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	CDS	2855531	2855614	1	-	0	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	exon	2855531	2855614	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	intron	2855615	2855844	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	CDS	2855845	2855899	1	-	1	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	exon	2855845	2855899	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	intron	2855900	2855987	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	CDS	2855988	2856057	1	-	2	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	exon	2855988	2856057	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	intron	2856058	2856210	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	CDS	2856211	2856371	1	-	1	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	exon	2856211	2856371	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	intron	2856372	2856513	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	CDS	2856514	2856635	1	-	0	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	exon	2856514	2856635	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	intron	2856636	2856854	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	CDS	2856855	2856926	1	-	0	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	exon	2856855	2856926	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	intron	2856927	2856991	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	CDS	2856992	2857069	0.87	-	0	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	exon	2856992	2857069	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	intron	2857070	2857186	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	CDS	2857187	2857285	0.83	-	0	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	exon	2857187	2857285	.	-	.	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
Ledus.S2	AUGUSTUS	start_codon	2857283	2857285	.	-	0	transcript_id "Ledus.S2G037200.t1"; gene_id "Ledus.S2G037200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11012.t1 is derived from g4630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1091880	1094448	.	-	.	Ledus.S4G016800
Ledus.S4	AUGUSTUS	transcript	1091880	1094448	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	stop_codon	1091877	1091879	.	-	0	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	CDS	1091880	1092323	1	-	0	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	exon	1091880	1092323	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	intron	1092324	1092400	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	CDS	1092401	1092417	1	-	2	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	exon	1092401	1092417	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	intron	1092418	1092496	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	CDS	1092497	1092537	1	-	1	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	exon	1092497	1092537	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	intron	1092538	1092806	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	CDS	1092807	1092813	0.74	-	2	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	exon	1092807	1092813	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	intron	1092814	1093195	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	CDS	1093196	1093499	0.88	-	0	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	exon	1093196	1093499	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	intron	1093500	1093706	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	CDS	1093707	1093763	1	-	0	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	exon	1093707	1093763	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	intron	1093764	1093849	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	CDS	1093850	1093954	1	-	0	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	exon	1093850	1093954	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	intron	1093955	1094049	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	CDS	1094050	1094448	1	-	0	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	exon	1094050	1094448	.	-	.	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
Ledus.S4	AUGUSTUS	start_codon	1094446	1094448	.	-	0	transcript_id "Ledus.S4G016800.t1"; gene_id "Ledus.S4G016800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11179.t1 is derived from g4797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2407045	2413376	.	-	.	Ledus.S4G033500
Ledus.S4	AUGUSTUS	transcript	2407045	2413376	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	stop_codon	2407042	2407044	.	-	0	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2407045	2407046	1	-	2	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2407045	2407046	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2407047	2407183	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2407184	2407291	1	-	2	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2407184	2407291	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2407292	2407384	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2407385	2407526	1	-	0	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2407385	2407526	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2407527	2407653	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2407654	2407923	1	-	0	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2407654	2407923	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2407924	2408154	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2408155	2408430	1	-	0	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2408155	2408430	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2408431	2408724	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2408725	2408799	1	-	0	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2408725	2408799	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2408800	2408890	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2408891	2409098	1	-	1	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2408891	2409098	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2409099	2409212	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2409213	2409497	1	-	1	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2409213	2409497	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2409498	2409634	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2409635	2409816	1	-	0	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2409635	2409816	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2409817	2410226	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2410227	2410338	1	-	1	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2410227	2410338	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2410339	2410509	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2410510	2411252	0.97	-	0	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2410510	2411252	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2411253	2411388	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2411389	2411644	1	-	1	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2411389	2411644	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2411645	2412036	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2412037	2412630	1	-	1	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2412037	2412630	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	intron	2412631	2413299	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	CDS	2413300	2413376	0.88	-	0	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	exon	2413300	2413376	.	-	.	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
Ledus.S4	AUGUSTUS	start_codon	2413374	2413376	.	-	0	transcript_id "Ledus.S4G033500.t1"; gene_id "Ledus.S4G033500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6540.t1 is derived from g3983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32218368	32221790	.	+	.	Ledus.S1G396100
Ledus.S1	AUGUSTUS	transcript	32218368	32221790	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	start_codon	32218368	32218370	.	+	0	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32218368	32219051	0.97	+	0	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32218368	32219051	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	intron	32219052	32219175	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32219176	32219318	1	+	0	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32219176	32219318	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	intron	32219319	32219419	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32219420	32219536	1	+	1	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32219420	32219536	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	intron	32219537	32219706	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32219707	32219821	1	+	1	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32219707	32219821	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	intron	32219822	32219948	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32219949	32220086	1	+	0	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32219949	32220086	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	intron	32220087	32220222	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32220223	32220318	1	+	0	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32220223	32220318	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	intron	32220319	32220444	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32220445	32220558	1	+	0	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32220445	32220558	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	intron	32220559	32220692	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32220693	32220761	1	+	0	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32220693	32220761	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	intron	32220762	32220884	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32220885	32220955	1	+	0	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32220885	32220955	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	intron	32220956	32221094	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32221095	32221188	0.99	+	1	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32221095	32221188	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	intron	32221189	32221292	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32221293	32221421	0.99	+	0	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32221293	32221421	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	intron	32221422	32221522	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32221523	32221612	1	+	0	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32221523	32221612	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	intron	32221613	32221697	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	CDS	32221698	32221790	1	+	0	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	exon	32221698	32221790	.	+	.	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
Ledus.S1	AUGUSTUS	stop_codon	32221791	32221793	.	+	0	transcript_id "Ledus.S1G396100.t1"; gene_id "Ledus.S1G396100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11597.t1 is derived from g5215.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5447966	5450809	.	+	.	Ledus.S4G075300
Ledus.S4	AUGUSTUS	transcript	5447966	5450809	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	start_codon	5447966	5447968	.	+	0	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5447966	5448103	0.65	+	0	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5447966	5448103	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5448104	5448191	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5448192	5448296	0.88	+	0	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5448192	5448296	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5448297	5448398	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5448399	5448512	0.88	+	0	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5448399	5448512	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5448513	5448592	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5448593	5448646	0.99	+	0	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5448593	5448646	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5448647	5448770	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5448771	5448887	0.99	+	0	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5448771	5448887	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5448888	5449026	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5449027	5449136	1	+	0	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5449027	5449136	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5449137	5449225	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5449226	5449299	1	+	1	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5449226	5449299	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5449300	5449404	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5449405	5449466	0.98	+	2	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5449405	5449466	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5449467	5449595	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5449596	5449782	1	+	0	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5449596	5449782	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5449783	5449880	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5449881	5449944	1	+	2	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5449881	5449944	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5449945	5450098	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5450099	5450166	1	+	1	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5450099	5450166	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5450167	5450310	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5450311	5450453	1	+	2	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5450311	5450453	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5450454	5450545	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5450546	5450809	0.99	+	0	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5450546	5450809	.	+	.	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	stop_codon	5450810	5450812	.	+	0	transcript_id "Ledus.S4G075300.t1"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	transcript	5448078	5450809	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	start_codon	5448078	5448080	.	+	0	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5448078	5448103	0.36	+	0	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5448078	5448103	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5448104	5448187	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5448188	5448296	0.72	+	1	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5448188	5448296	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5448297	5448398	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5448399	5448512	0.77	+	0	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5448399	5448512	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5448513	5448592	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5448593	5448646	0.99	+	0	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5448593	5448646	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5448647	5448770	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5448771	5448887	0.99	+	0	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5448771	5448887	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5448888	5449026	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5449027	5449136	1	+	0	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5449027	5449136	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5449137	5449225	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5449226	5449299	1	+	1	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5449226	5449299	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5449300	5449404	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5449405	5449466	0.53	+	2	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5449405	5449466	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5449467	5449595	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5449596	5449782	0.55	+	0	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5449596	5449782	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5449783	5449880	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5449881	5449944	1	+	2	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5449881	5449944	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5449945	5450098	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5450099	5450166	1	+	1	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5450099	5450166	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5450167	5450310	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5450311	5450453	1	+	2	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5450311	5450453	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	intron	5450454	5450545	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	CDS	5450546	5450809	1	+	0	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	exon	5450546	5450809	.	+	.	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
Ledus.S4	AUGUSTUS	stop_codon	5450810	5450812	.	+	0	transcript_id "Ledus.S4G075300.t2"; gene_id "Ledus.S4G075300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11443.t1 is derived from g5061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4361363	4364087	.	+	.	Ledus.S4G059900
Ledus.S4	AUGUSTUS	transcript	4361363	4364087	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	start_codon	4361363	4361365	.	+	0	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	CDS	4361363	4361572	1	+	0	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	exon	4361363	4361572	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	intron	4361573	4361721	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	CDS	4361722	4361821	1	+	0	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	exon	4361722	4361821	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	intron	4361822	4361924	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	CDS	4361925	4362016	1	+	2	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	exon	4361925	4362016	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	intron	4362017	4362148	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	CDS	4362149	4362280	1	+	0	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	exon	4362149	4362280	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	intron	4362281	4362411	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	CDS	4362412	4362597	1	+	0	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	exon	4362412	4362597	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	intron	4362598	4362760	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	CDS	4362761	4362924	1	+	0	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	exon	4362761	4362924	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	intron	4362925	4363054	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	CDS	4363055	4363133	1	+	1	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	exon	4363055	4363133	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	intron	4363134	4363283	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	CDS	4363284	4363412	1	+	0	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	exon	4363284	4363412	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	intron	4363413	4363484	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	CDS	4363485	4363612	1	+	0	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	exon	4363485	4363612	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	intron	4363613	4363699	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	CDS	4363700	4364087	0.55	+	1	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	exon	4363700	4364087	.	+	.	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
Ledus.S4	AUGUSTUS	stop_codon	4364088	4364090	.	+	0	transcript_id "Ledus.S4G059900.t1"; gene_id "Ledus.S4G059900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4982.t1 is derived from g2420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20969563	20969868	.	-	.	Ledus.S1G240300
Ledus.S1	AUGUSTUS	transcript	20969563	20969868	.	-	.	transcript_id "Ledus.S1G240300.t1"; gene_id "Ledus.S1G240300"
Ledus.S1	AUGUSTUS	stop_codon	20969560	20969562	.	-	0	transcript_id "Ledus.S1G240300.t1"; gene_id "Ledus.S1G240300"
Ledus.S1	AUGUSTUS	CDS	20969563	20969868	0.31	-	0	transcript_id "Ledus.S1G240300.t1"; gene_id "Ledus.S1G240300"
Ledus.S1	AUGUSTUS	exon	20969563	20969868	.	-	.	transcript_id "Ledus.S1G240300.t1"; gene_id "Ledus.S1G240300"
Ledus.S1	AUGUSTUS	start_codon	20969866	20969868	.	-	0	transcript_id "Ledus.S1G240300.t1"; gene_id "Ledus.S1G240300"
# This transcript jg8209.t2 is derived from g12880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8209.t3 is derived from g12880.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8210.t1 is derived from g12881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9897042	9898883	.	+	.	Ledus.S5G098800
Ledus.S5	AUGUSTUS	transcript	9897042	9898883	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	start_codon	9897042	9897044	.	+	0	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	CDS	9897042	9897325	0.88	+	0	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	exon	9897042	9897325	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	intron	9897326	9897400	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	CDS	9897401	9897532	1	+	1	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	exon	9897401	9897532	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	intron	9897533	9897608	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	CDS	9897609	9897653	1	+	1	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	exon	9897609	9897653	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	intron	9897654	9897755	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	CDS	9897756	9897925	1	+	1	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	exon	9897756	9897925	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	intron	9897926	9898008	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	CDS	9898009	9898094	1	+	2	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	exon	9898009	9898094	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	intron	9898095	9898245	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	CDS	9898246	9898353	0.99	+	0	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	exon	9898246	9898353	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	intron	9898354	9898608	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	CDS	9898609	9898689	0.52	+	0	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	exon	9898609	9898689	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	intron	9898690	9898826	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	CDS	9898827	9898883	0.97	+	0	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	exon	9898827	9898883	.	+	.	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
Ledus.S5	AUGUSTUS	stop_codon	9898884	9898886	.	+	0	transcript_id "Ledus.S5G098800.t1"; gene_id "Ledus.S5G098800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2148.t1 is derived from g9011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15290169	15290726	.	-	.	Ledus.S2G203000
Ledus.S2	AUGUSTUS	transcript	15290169	15290726	.	-	.	transcript_id "Ledus.S2G203000.t1"; gene_id "Ledus.S2G203000"
Ledus.S2	AUGUSTUS	stop_codon	15290166	15290168	.	-	0	transcript_id "Ledus.S2G203000.t1"; gene_id "Ledus.S2G203000"
Ledus.S2	AUGUSTUS	CDS	15290169	15290726	0.74	-	0	transcript_id "Ledus.S2G203000.t1"; gene_id "Ledus.S2G203000"
Ledus.S2	AUGUSTUS	exon	15290169	15290726	.	-	.	transcript_id "Ledus.S2G203000.t1"; gene_id "Ledus.S2G203000"
Ledus.S2	AUGUSTUS	start_codon	15290724	15290726	.	-	0	transcript_id "Ledus.S2G203000.t1"; gene_id "Ledus.S2G203000"
# This transcript jg12880.t2 is derived from g4453.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12880.t3 is derived from g4453.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12881.t1 is derived from g4454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	324539	331094	.	-	.	Ledus.C10G002400
Ledus.C10	AUGUSTUS	transcript	324539	331094	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	stop_codon	324536	324538	.	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	324539	325211	0.95	-	1	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	324539	325211	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	325212	325718	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	325719	325915	0.95	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	325719	325915	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	325916	326006	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	326007	326111	1	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	326007	326111	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	326112	326207	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	326208	326343	1	-	1	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	326208	326343	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	326344	326420	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	326421	326533	1	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	326421	326533	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	326534	326703	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	326704	326799	1	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	326704	326799	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	326800	326979	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	326980	327200	1	-	2	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	326980	327200	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	327201	327301	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	327302	327424	1	-	2	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	327302	327424	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	327425	327531	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	327532	327562	1	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	327532	327562	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	327563	327698	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	327699	327739	1	-	2	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	327699	327739	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	327740	327960	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	327961	328049	1	-	1	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	327961	328049	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	328050	328149	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	328150	328403	1	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	328150	328403	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	328404	328504	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	328505	328594	0.98	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	328505	328594	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	328595	328738	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	328739	328954	1	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	328739	328954	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	328955	329053	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	329054	329188	1	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	329054	329188	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	329189	329320	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	329321	329824	1	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	329321	329824	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	329825	329919	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	329920	330132	1	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	329920	330132	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	330133	330222	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	330223	330268	1	-	1	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	330223	330268	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	330269	330371	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	330372	330508	1	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	330372	330508	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	330509	330591	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	330592	330724	1	-	1	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	330592	330724	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	intron	330725	330822	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	CDS	330823	331094	1	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	exon	330823	331094	.	-	.	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
Ledus.C10	AUGUSTUS	start_codon	331092	331094	.	-	0	transcript_id "Ledus.C10G002400.t1"; gene_id "Ledus.C10G002400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7532.t1 is derived from g12203.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3642473	3644491	.	-	.	Ledus.S5G031000
Ledus.S5	AUGUSTUS	transcript	3642473	3644491	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	stop_codon	3642470	3642472	.	-	0	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3642473	3642643	1	-	0	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3642473	3642643	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3642644	3642730	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3642731	3642802	0.99	-	0	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3642731	3642802	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3642803	3642913	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3642914	3643111	0.99	-	0	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3642914	3643111	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3643112	3643207	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3643208	3643348	1	-	0	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3643208	3643348	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3643349	3643448	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3643449	3643625	1	-	0	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3643449	3643625	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3643626	3643713	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3643714	3643842	1	-	0	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3643714	3643842	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3643843	3643932	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3643933	3644049	1	-	0	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3643933	3644049	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3644050	3644128	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3644129	3644278	1	-	0	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3644129	3644278	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3644279	3644365	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3644366	3644491	0.84	-	0	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3644366	3644491	.	-	.	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	start_codon	3644489	3644491	.	-	0	transcript_id "Ledus.S5G031000.t1"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	transcript	3642473	3644491	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	stop_codon	3642470	3642472	.	-	0	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3642473	3642643	1	-	0	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3642473	3642643	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3642644	3642730	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3642731	3642802	1	-	0	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3642731	3642802	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3642803	3642913	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3642914	3643111	0.99	-	0	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3642914	3643111	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3643112	3643207	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3643208	3643348	1	-	0	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3643208	3643348	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3643349	3643448	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3643449	3643628	0.98	-	0	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3643449	3643628	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3643629	3643713	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3643714	3643842	1	-	0	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3643714	3643842	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3643843	3643932	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3643933	3644049	1	-	0	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3643933	3644049	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3644050	3644128	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3644129	3644278	1	-	0	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3644129	3644278	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3644279	3644365	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3644366	3644491	0.84	-	0	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3644366	3644491	.	-	.	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	start_codon	3644489	3644491	.	-	0	transcript_id "Ledus.S5G031000.t2"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	transcript	3642473	3644390	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	stop_codon	3642470	3642472	.	-	0	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3642473	3642643	1	-	0	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3642473	3642643	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3642644	3642730	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3642731	3642802	0.99	-	0	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3642731	3642802	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3642803	3642913	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3642914	3643111	0.97	-	0	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3642914	3643111	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3643112	3643207	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3643208	3643348	1	-	0	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3643208	3643348	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3643349	3643448	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3643449	3643625	1	-	0	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3643449	3643625	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3643626	3643713	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3643714	3643842	1	-	0	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3643714	3643842	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3643843	3643932	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3643933	3644049	1	-	0	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3643933	3644049	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3644050	3644128	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3644129	3644223	0.5	-	2	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3644129	3644223	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	intron	3644224	3644365	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	CDS	3644366	3644390	0.5	-	0	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	exon	3644366	3644390	.	-	.	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
Ledus.S5	AUGUSTUS	start_codon	3644388	3644390	.	-	0	transcript_id "Ledus.S5G031000.t3"; gene_id "Ledus.S5G031000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7483.t1 is derived from g12154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3234358	3234687	.	+	.	Ledus.S5G026100
Ledus.S5	AUGUSTUS	transcript	3234358	3234687	.	+	.	transcript_id "Ledus.S5G026100.t1"; gene_id "Ledus.S5G026100"
Ledus.S5	AUGUSTUS	start_codon	3234358	3234360	.	+	0	transcript_id "Ledus.S5G026100.t1"; gene_id "Ledus.S5G026100"
Ledus.S5	AUGUSTUS	CDS	3234358	3234687	0.5	+	0	transcript_id "Ledus.S5G026100.t1"; gene_id "Ledus.S5G026100"
Ledus.S5	AUGUSTUS	exon	3234358	3234687	.	+	.	transcript_id "Ledus.S5G026100.t1"; gene_id "Ledus.S5G026100"
Ledus.S5	AUGUSTUS	stop_codon	3234688	3234690	.	+	0	transcript_id "Ledus.S5G026100.t1"; gene_id "Ledus.S5G026100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1525.t1 is derived from g8386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10790567	10790956	.	-	.	Ledus.S2G140700
Ledus.S2	AUGUSTUS	transcript	10790567	10790956	.	-	.	transcript_id "Ledus.S2G140700.t1"; gene_id "Ledus.S2G140700"
Ledus.S2	AUGUSTUS	stop_codon	10790564	10790566	.	-	0	transcript_id "Ledus.S2G140700.t1"; gene_id "Ledus.S2G140700"
Ledus.S2	AUGUSTUS	CDS	10790567	10790956	0.38	-	0	transcript_id "Ledus.S2G140700.t1"; gene_id "Ledus.S2G140700"
Ledus.S2	AUGUSTUS	exon	10790567	10790956	.	-	.	transcript_id "Ledus.S2G140700.t1"; gene_id "Ledus.S2G140700"
Ledus.S2	AUGUSTUS	start_codon	10790954	10790956	.	-	0	transcript_id "Ledus.S2G140700.t1"; gene_id "Ledus.S2G140700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5877.t1 is derived from g3319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27520582	27526030	.	+	.	Ledus.S1G329800
Ledus.S1	AUGUSTUS	transcript	27520582	27526030	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	start_codon	27520582	27520584	.	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27520582	27520584	1	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27520582	27520584	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27520585	27520673	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27520674	27520771	1	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27520674	27520771	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27520772	27520896	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27520897	27520987	1	+	1	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27520897	27520987	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27520988	27521083	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27521084	27521244	1	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27521084	27521244	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27521245	27521323	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27521324	27521433	1	+	1	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27521324	27521433	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27521434	27521621	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27521622	27521792	1	+	2	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27521622	27521792	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27521793	27521895	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27521896	27521964	1	+	2	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27521896	27521964	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27521965	27522056	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27522057	27522225	1	+	2	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27522057	27522225	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27522226	27522320	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27522321	27522435	1	+	1	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27522321	27522435	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27522436	27522509	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27522510	27522629	1	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27522510	27522629	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27522630	27522734	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27522735	27522850	1	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27522735	27522850	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27522851	27522969	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27522970	27523053	1	+	1	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27522970	27523053	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27523054	27523154	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27523155	27523267	0.44	+	1	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27523155	27523267	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27523268	27523379	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27523380	27523432	0.53	+	2	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27523380	27523432	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27523433	27523538	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27523539	27523715	1	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27523539	27523715	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27523716	27523847	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27523848	27523895	1	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27523848	27523895	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27523896	27523984	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27523985	27524134	0.96	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27523985	27524134	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27524135	27524248	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27524249	27524362	0.76	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27524249	27524362	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27524363	27524502	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27524503	27524591	1	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27524503	27524591	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27524592	27524717	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27524718	27524873	1	+	1	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27524718	27524873	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27524874	27524940	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27524941	27525043	1	+	1	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27524941	27525043	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27525044	27525139	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27525140	27525259	1	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27525140	27525259	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27525260	27525368	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27525369	27525419	0.97	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27525369	27525419	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27525420	27525527	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27525528	27525710	0.99	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27525528	27525710	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	intron	27525711	27525799	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	CDS	27525800	27526030	0.96	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	exon	27525800	27526030	.	+	.	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
Ledus.S1	AUGUSTUS	stop_codon	27526031	27526033	.	+	0	transcript_id "Ledus.S1G329800.t1"; gene_id "Ledus.S1G329800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg368.t1 is derived from g7229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1990175	1992213	.	+	.	Ledus.S2G025000
Ledus.S2	AUGUSTUS	transcript	1990175	1992213	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	start_codon	1990175	1990177	.	+	0	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	CDS	1990175	1990277	1	+	0	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	exon	1990175	1990277	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	intron	1990278	1990381	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	CDS	1990382	1990679	0.99	+	2	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	exon	1990382	1990679	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	intron	1990680	1991016	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	CDS	1991017	1991095	1	+	1	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	exon	1991017	1991095	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	intron	1991096	1991171	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	CDS	1991172	1991230	1	+	0	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	exon	1991172	1991230	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	intron	1991231	1991335	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	CDS	1991336	1991429	1	+	1	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	exon	1991336	1991429	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	intron	1991430	1991527	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	CDS	1991528	1991735	0.99	+	0	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	exon	1991528	1991735	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	intron	1991736	1992109	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	CDS	1992110	1992213	0.99	+	2	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	exon	1992110	1992213	.	+	.	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
Ledus.S2	AUGUSTUS	stop_codon	1992214	1992216	.	+	0	transcript_id "Ledus.S2G025000.t1"; gene_id "Ledus.S2G025000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11538.t1 is derived from g5156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5181198	5184276	.	+	.	Ledus.S4G069400
Ledus.S4	AUGUSTUS	transcript	5181198	5184276	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	start_codon	5181198	5181200	.	+	0	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5181198	5181338	0.84	+	0	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5181198	5181338	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5181339	5181477	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5181478	5181556	1	+	0	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5181478	5181556	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5181557	5181644	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5181645	5181714	1	+	2	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5181645	5181714	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5181715	5181790	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5181791	5181902	1	+	1	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5181791	5181902	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5181903	5181997	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5181998	5182093	1	+	0	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5181998	5182093	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5182094	5182186	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5182187	5182349	0.73	+	0	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5182187	5182349	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5182350	5182601	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5182602	5182740	0.8	+	2	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5182602	5182740	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5182741	5182840	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5182841	5183123	1	+	1	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5182841	5183123	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5183124	5183268	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5183269	5183346	1	+	0	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5183269	5183346	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5183347	5183665	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5183666	5183882	1	+	0	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5183666	5183882	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5183883	5183979	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5183980	5184158	1	+	2	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5183980	5184158	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5184159	5184234	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5184235	5184276	1	+	0	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5184235	5184276	.	+	.	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	stop_codon	5184277	5184279	.	+	0	transcript_id "Ledus.S4G069400.t1"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	transcript	5181198	5184276	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	start_codon	5181198	5181200	.	+	0	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5181198	5181338	0.83	+	0	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5181198	5181338	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5181339	5181471	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5181472	5181556	1	+	0	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5181472	5181556	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5181557	5181644	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5181645	5181714	1	+	2	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5181645	5181714	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5181715	5181790	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5181791	5181902	1	+	1	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5181791	5181902	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5181903	5181997	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5181998	5182093	1	+	0	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5181998	5182093	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5182094	5182186	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5182187	5182349	0.71	+	0	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5182187	5182349	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5182350	5182601	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5182602	5182740	0.73	+	2	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5182602	5182740	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5182741	5182840	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5182841	5183123	1	+	1	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5182841	5183123	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5183124	5183268	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5183269	5183346	1	+	0	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5183269	5183346	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5183347	5183665	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5183666	5183882	1	+	0	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5183666	5183882	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5183883	5183979	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5183980	5184158	1	+	2	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5183980	5184158	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	intron	5184159	5184234	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	CDS	5184235	5184276	1	+	0	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	exon	5184235	5184276	.	+	.	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
Ledus.S4	AUGUSTUS	stop_codon	5184277	5184279	.	+	0	transcript_id "Ledus.S4G069400.t2"; gene_id "Ledus.S4G069400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10395.t1 is derived from g11425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14790183	14791920	.	+	.	Ledus.S3G187200
Ledus.S3	AUGUSTUS	transcript	14790183	14791920	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	start_codon	14790183	14790185	.	+	0	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	CDS	14790183	14790213	0.75	+	0	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	exon	14790183	14790213	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	intron	14790214	14790309	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	CDS	14790310	14790511	0.81	+	2	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	exon	14790310	14790511	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	intron	14790512	14790635	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	CDS	14790636	14790779	1	+	1	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	exon	14790636	14790779	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	intron	14790780	14790873	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	CDS	14790874	14790957	0.99	+	1	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	exon	14790874	14790957	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	intron	14790958	14791072	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	CDS	14791073	14791147	1	+	1	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	exon	14791073	14791147	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	intron	14791148	14791285	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	CDS	14791286	14791522	0.43	+	1	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	exon	14791286	14791522	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	intron	14791523	14791856	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	CDS	14791857	14791920	0.94	+	1	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	exon	14791857	14791920	.	+	.	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
Ledus.S3	AUGUSTUS	stop_codon	14791921	14791923	.	+	0	transcript_id "Ledus.S3G187200.t1"; gene_id "Ledus.S3G187200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5352.t1 is derived from g2791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23578349	23578893	.	+	.	Ledus.S1G277300
Ledus.S1	AUGUSTUS	transcript	23578349	23578893	.	+	.	transcript_id "Ledus.S1G277300.t1"; gene_id "Ledus.S1G277300"
Ledus.S1	AUGUSTUS	start_codon	23578349	23578351	.	+	0	transcript_id "Ledus.S1G277300.t1"; gene_id "Ledus.S1G277300"
Ledus.S1	AUGUSTUS	CDS	23578349	23578623	0.41	+	0	transcript_id "Ledus.S1G277300.t1"; gene_id "Ledus.S1G277300"
Ledus.S1	AUGUSTUS	exon	23578349	23578623	.	+	.	transcript_id "Ledus.S1G277300.t1"; gene_id "Ledus.S1G277300"
Ledus.S1	AUGUSTUS	intron	23578624	23578772	.	+	.	transcript_id "Ledus.S1G277300.t1"; gene_id "Ledus.S1G277300"
Ledus.S1	AUGUSTUS	CDS	23578773	23578893	0.84	+	1	transcript_id "Ledus.S1G277300.t1"; gene_id "Ledus.S1G277300"
Ledus.S1	AUGUSTUS	exon	23578773	23578893	.	+	.	transcript_id "Ledus.S1G277300.t1"; gene_id "Ledus.S1G277300"
Ledus.S1	AUGUSTUS	stop_codon	23578894	23578896	.	+	0	transcript_id "Ledus.S1G277300.t1"; gene_id "Ledus.S1G277300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3686.t1 is derived from g1122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10848046	10850872	.	-	.	Ledus.S1G110700
Ledus.S1	AUGUSTUS	transcript	10848046	10850872	.	-	.	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	stop_codon	10848043	10848045	.	-	0	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	CDS	10848046	10848480	0.25	-	0	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	exon	10848046	10848480	.	-	.	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	intron	10848481	10848655	.	-	.	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	CDS	10848656	10849084	0.47	-	0	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	exon	10848656	10849084	.	-	.	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	intron	10849085	10849229	.	-	.	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	CDS	10849230	10849289	1	-	0	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	exon	10849230	10849289	.	-	.	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	intron	10849290	10849505	.	-	.	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	CDS	10849506	10850030	0.6	-	0	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	exon	10849506	10850030	.	-	.	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	intron	10850031	10850197	.	-	.	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	CDS	10850198	10850872	0.85	-	0	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	exon	10850198	10850872	.	-	.	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
Ledus.S1	AUGUSTUS	start_codon	10850870	10850872	.	-	0	transcript_id "Ledus.S1G110700.t1"; gene_id "Ledus.S1G110700"
# This transcript jg9316.t2 is derived from g10346.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9317.t1 is derived from g10347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6052221	6052568	.	+	.	Ledus.S3G079400
Ledus.S3	AUGUSTUS	transcript	6052221	6052568	.	+	.	transcript_id "Ledus.S3G079400.t1"; gene_id "Ledus.S3G079400"
Ledus.S3	AUGUSTUS	start_codon	6052221	6052223	.	+	0	transcript_id "Ledus.S3G079400.t1"; gene_id "Ledus.S3G079400"
Ledus.S3	AUGUSTUS	CDS	6052221	6052568	0.71	+	0	transcript_id "Ledus.S3G079400.t1"; gene_id "Ledus.S3G079400"
Ledus.S3	AUGUSTUS	exon	6052221	6052568	.	+	.	transcript_id "Ledus.S3G079400.t1"; gene_id "Ledus.S3G079400"
Ledus.S3	AUGUSTUS	stop_codon	6052569	6052571	.	+	0	transcript_id "Ledus.S3G079400.t1"; gene_id "Ledus.S3G079400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2570.t1 is derived from g9433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19025990	19029678	.	+	.	Ledus.S2G245200
Ledus.S2	AUGUSTUS	transcript	19025990	19029678	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	start_codon	19025990	19025992	.	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19025990	19026160	0.85	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19025990	19026160	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19026161	19026365	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19026366	19026416	1	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19026366	19026416	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19026417	19026506	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19026507	19026551	1	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19026507	19026551	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19026552	19026824	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19026825	19026890	1	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19026825	19026890	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19026891	19027083	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19027084	19027148	1	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19027084	19027148	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19027149	19027426	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19027427	19027505	1	+	1	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19027427	19027505	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19027506	19027643	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19027644	19027748	1	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19027644	19027748	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19027749	19027841	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19027842	19027952	1	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19027842	19027952	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19027953	19028102	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19028103	19028240	1	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19028103	19028240	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19028241	19028411	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19028412	19028486	1	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19028412	19028486	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19028487	19028571	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19028572	19028692	1	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19028572	19028692	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19028693	19028846	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19028847	19029001	1	+	2	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19028847	19029001	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19029002	19029112	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19029113	19029187	1	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19029113	19029187	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19029188	19029284	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19029285	19029488	1	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19029285	19029488	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	intron	19029489	19029564	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	CDS	19029565	19029678	1	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	exon	19029565	19029678	.	+	.	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
Ledus.S2	AUGUSTUS	stop_codon	19029679	19029681	.	+	0	transcript_id "Ledus.S2G245200.t1"; gene_id "Ledus.S2G245200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13032.t1 is derived from g6842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3576444	3576812	.	+	.	Ledus.S6G009400
Ledus.S6	AUGUSTUS	transcript	3576444	3576812	.	+	.	transcript_id "Ledus.S6G009400.t1"; gene_id "Ledus.S6G009400"
Ledus.S6	AUGUSTUS	start_codon	3576444	3576446	.	+	0	transcript_id "Ledus.S6G009400.t1"; gene_id "Ledus.S6G009400"
Ledus.S6	AUGUSTUS	CDS	3576444	3576812	0.71	+	0	transcript_id "Ledus.S6G009400.t1"; gene_id "Ledus.S6G009400"
Ledus.S6	AUGUSTUS	exon	3576444	3576812	.	+	.	transcript_id "Ledus.S6G009400.t1"; gene_id "Ledus.S6G009400"
Ledus.S6	AUGUSTUS	stop_codon	3576813	3576815	.	+	0	transcript_id "Ledus.S6G009400.t1"; gene_id "Ledus.S6G009400"
# This transcript jg373.t2 is derived from g7234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg374.t1 is derived from g7235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2009933	2011400	.	+	.	Ledus.S2G025600
Ledus.S2	AUGUSTUS	transcript	2009933	2010826	.	+	.	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	start_codon	2009933	2009935	.	+	0	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	CDS	2009933	2010006	1	+	0	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	exon	2009933	2010006	.	+	.	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	intron	2010007	2010120	.	+	.	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	CDS	2010121	2010217	1	+	1	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	exon	2010121	2010217	.	+	.	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	intron	2010218	2010361	.	+	.	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	CDS	2010362	2010500	1	+	0	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	exon	2010362	2010500	.	+	.	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	intron	2010501	2010589	.	+	.	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	CDS	2010590	2010672	1	+	2	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	exon	2010590	2010672	.	+	.	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	intron	2010673	2010823	.	+	.	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	CDS	2010824	2010826	1	+	0	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	exon	2010824	2010826	.	+	.	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	stop_codon	2010827	2010829	.	+	0	transcript_id "Ledus.S2G025600.t1"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	transcript	2009933	2011400	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	start_codon	2009933	2009935	.	+	0	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	CDS	2009933	2010006	1	+	0	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	exon	2009933	2010006	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	intron	2010007	2010120	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	CDS	2010121	2010217	1	+	1	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	exon	2010121	2010217	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	intron	2010218	2010361	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	CDS	2010362	2010500	1	+	0	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	exon	2010362	2010500	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	intron	2010501	2010589	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	CDS	2010590	2010672	0.98	+	2	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	exon	2010590	2010672	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	intron	2010673	2010803	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	CDS	2010804	2010863	0.68	+	0	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	exon	2010804	2010863	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	intron	2010864	2011062	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	CDS	2011063	2011167	0.87	+	0	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	exon	2011063	2011167	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	intron	2011168	2011265	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	CDS	2011266	2011400	0.41	+	0	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	exon	2011266	2011400	.	+	.	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
Ledus.S2	AUGUSTUS	stop_codon	2011401	2011403	.	+	0	transcript_id "Ledus.S2G025600.t2"; gene_id "Ledus.S2G025600"
# This transcript jg3917.t2 is derived from g1353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3918.t1 is derived from g1354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13554696	13557613	.	-	.	Ledus.S1G133900
Ledus.S1	AUGUSTUS	transcript	13554696	13557613	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	stop_codon	13554693	13554695	.	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13554696	13554804	0.98	-	1	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13554696	13554804	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13554805	13554902	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13554903	13554963	1	-	2	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13554903	13554963	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13554964	13555047	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13555048	13555156	1	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13555048	13555156	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13555157	13555251	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13555252	13555323	1	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13555252	13555323	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13555324	13555460	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13555461	13555559	1	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13555461	13555559	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13555560	13555673	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13555674	13555751	1	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13555674	13555751	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13555752	13555839	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13555840	13555929	1	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13555840	13555929	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13555930	13556055	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13556056	13556166	0.98	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13556056	13556166	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13556167	13556316	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13556317	13556439	0.91	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13556317	13556439	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13556440	13556519	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13556520	13556666	1	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13556520	13556666	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13556667	13556745	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13556746	13556817	1	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13556746	13556817	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13556818	13556876	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13556877	13556990	1	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13556877	13556990	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13556991	13557085	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13557086	13557127	1	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13557086	13557127	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13557128	13557221	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13557222	13557293	1	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13557222	13557293	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13557294	13557366	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13557367	13557442	1	-	1	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13557367	13557442	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	intron	13557443	13557533	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	CDS	13557534	13557613	0.86	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	exon	13557534	13557613	.	-	.	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
Ledus.S1	AUGUSTUS	start_codon	13557611	13557613	.	-	0	transcript_id "Ledus.S1G133900.t1"; gene_id "Ledus.S1G133900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11608.t1 is derived from g5226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5511622	5512631	.	-	.	Ledus.S4G076400
Ledus.S4	AUGUSTUS	transcript	5511622	5512631	.	-	.	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	stop_codon	5511619	5511621	.	-	0	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	CDS	5511622	5511674	1	-	2	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	exon	5511622	5511674	.	-	.	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	intron	5511675	5511756	.	-	.	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	CDS	5511757	5511771	1	-	2	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	exon	5511757	5511771	.	-	.	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	intron	5511772	5511853	.	-	.	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	CDS	5511854	5512019	1	-	0	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	exon	5511854	5512019	.	-	.	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	intron	5512020	5512114	.	-	.	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	CDS	5512115	5512189	1	-	0	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	exon	5512115	5512189	.	-	.	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	intron	5512190	5512304	.	-	.	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	CDS	5512305	5512631	0.67	-	0	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	exon	5512305	5512631	.	-	.	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
Ledus.S4	AUGUSTUS	start_codon	5512629	5512631	.	-	0	transcript_id "Ledus.S4G076400.t1"; gene_id "Ledus.S4G076400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9114.t1 is derived from g10144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4665937	4667580	.	+	.	Ledus.S3G059100
Ledus.S3	AUGUSTUS	transcript	4665937	4667580	.	+	.	transcript_id "Ledus.S3G059100.t1"; gene_id "Ledus.S3G059100"
Ledus.S3	AUGUSTUS	start_codon	4665937	4665939	.	+	0	transcript_id "Ledus.S3G059100.t1"; gene_id "Ledus.S3G059100"
Ledus.S3	AUGUSTUS	CDS	4665937	4667580	1	+	0	transcript_id "Ledus.S3G059100.t1"; gene_id "Ledus.S3G059100"
Ledus.S3	AUGUSTUS	exon	4665937	4667580	.	+	.	transcript_id "Ledus.S3G059100.t1"; gene_id "Ledus.S3G059100"
Ledus.S3	AUGUSTUS	stop_codon	4667581	4667583	.	+	0	transcript_id "Ledus.S3G059100.t1"; gene_id "Ledus.S3G059100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12906.t1 is derived from g4398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	202586	206262	.	+	.	Ledus.C9G001400
Ledus.C9	AUGUSTUS	transcript	202586	206262	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	start_codon	202586	202588	.	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	202586	202636	0.96	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	202586	202636	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	202637	202801	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	202802	202867	1	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	202802	202867	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	202868	202970	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	202971	203066	0.98	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	202971	203066	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	203067	203158	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	203159	203272	1	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	203159	203272	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	203273	203421	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	203422	203640	0.76	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	203422	203640	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	203641	203765	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	203766	203915	0.86	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	203766	203915	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	203916	204031	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	204032	204187	0.6	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	204032	204187	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	204188	204269	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	204270	204368	0.98	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	204270	204368	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	204369	204521	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	204522	204659	0.95	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	204522	204659	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	204660	204791	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	204792	204892	1	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	204792	204892	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	204893	204975	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	204976	205021	1	+	1	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	204976	205021	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	205022	205128	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	205129	205206	1	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	205129	205206	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	205207	205295	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	205296	205388	1	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	205296	205388	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	205389	205468	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	205469	205576	0.89	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	205469	205576	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	205577	205651	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	205652	205743	0.99	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	205652	205743	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	205744	205838	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	205839	205936	1	+	1	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	205839	205936	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	intron	205937	206020	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	CDS	206021	206262	0.93	+	2	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	exon	206021	206262	.	+	.	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
Ledus.C9	AUGUSTUS	stop_codon	206263	206265	.	+	0	transcript_id "Ledus.C9G001400.t1"; gene_id "Ledus.C9G001400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6687.t1 is derived from g4130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33232354	33232863	.	+	.	Ledus.S1G410800
Ledus.S1	AUGUSTUS	transcript	33232354	33232863	.	+	.	transcript_id "Ledus.S1G410800.t1"; gene_id "Ledus.S1G410800"
Ledus.S1	AUGUSTUS	start_codon	33232354	33232356	.	+	0	transcript_id "Ledus.S1G410800.t1"; gene_id "Ledus.S1G410800"
Ledus.S1	AUGUSTUS	CDS	33232354	33232863	0.52	+	0	transcript_id "Ledus.S1G410800.t1"; gene_id "Ledus.S1G410800"
Ledus.S1	AUGUSTUS	exon	33232354	33232863	.	+	.	transcript_id "Ledus.S1G410800.t1"; gene_id "Ledus.S1G410800"
Ledus.S1	AUGUSTUS	stop_codon	33232864	33232866	.	+	0	transcript_id "Ledus.S1G410800.t1"; gene_id "Ledus.S1G410800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11854.t1 is derived from g5473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7308775	7309493	.	+	.	Ledus.S4G101000
Ledus.S4	AUGUSTUS	transcript	7308775	7309493	.	+	.	transcript_id "Ledus.S4G101000.t1"; gene_id "Ledus.S4G101000"
Ledus.S4	AUGUSTUS	start_codon	7308775	7308777	.	+	0	transcript_id "Ledus.S4G101000.t1"; gene_id "Ledus.S4G101000"
Ledus.S4	AUGUSTUS	CDS	7308775	7308874	0.66	+	0	transcript_id "Ledus.S4G101000.t1"; gene_id "Ledus.S4G101000"
Ledus.S4	AUGUSTUS	exon	7308775	7308874	.	+	.	transcript_id "Ledus.S4G101000.t1"; gene_id "Ledus.S4G101000"
Ledus.S4	AUGUSTUS	intron	7308875	7309041	.	+	.	transcript_id "Ledus.S4G101000.t1"; gene_id "Ledus.S4G101000"
Ledus.S4	AUGUSTUS	CDS	7309042	7309117	0.97	+	2	transcript_id "Ledus.S4G101000.t1"; gene_id "Ledus.S4G101000"
Ledus.S4	AUGUSTUS	exon	7309042	7309117	.	+	.	transcript_id "Ledus.S4G101000.t1"; gene_id "Ledus.S4G101000"
Ledus.S4	AUGUSTUS	intron	7309118	7309207	.	+	.	transcript_id "Ledus.S4G101000.t1"; gene_id "Ledus.S4G101000"
Ledus.S4	AUGUSTUS	CDS	7309208	7309493	1	+	1	transcript_id "Ledus.S4G101000.t1"; gene_id "Ledus.S4G101000"
Ledus.S4	AUGUSTUS	exon	7309208	7309493	.	+	.	transcript_id "Ledus.S4G101000.t1"; gene_id "Ledus.S4G101000"
Ledus.S4	AUGUSTUS	stop_codon	7309494	7309496	.	+	0	transcript_id "Ledus.S4G101000.t1"; gene_id "Ledus.S4G101000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9690.t1 is derived from g10720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9052201	9054947	.	-	.	Ledus.S3G116700
Ledus.S3	AUGUSTUS	transcript	9052201	9054947	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	stop_codon	9052198	9052200	.	-	0	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	CDS	9052201	9052687	0.98	-	1	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	exon	9052201	9052687	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	intron	9052688	9052813	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	CDS	9052814	9052896	1	-	0	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	exon	9052814	9052896	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	intron	9052897	9052976	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	CDS	9052977	9053131	1	-	2	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	exon	9052977	9053131	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	intron	9053132	9053229	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	CDS	9053230	9053709	1	-	2	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	exon	9053230	9053709	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	intron	9053710	9053868	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	CDS	9053869	9054111	1	-	2	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	exon	9053869	9054111	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	intron	9054112	9054202	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	CDS	9054203	9054417	1	-	1	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	exon	9054203	9054417	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	intron	9054418	9054499	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	CDS	9054500	9054764	1	-	2	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	exon	9054500	9054764	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	intron	9054765	9054898	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	CDS	9054899	9054947	0.82	-	0	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	exon	9054899	9054947	.	-	.	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
Ledus.S3	AUGUSTUS	start_codon	9054945	9054947	.	-	0	transcript_id "Ledus.S3G116700.t1"; gene_id "Ledus.S3G116700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6502.t1 is derived from g3945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31668319	31669740	.	+	.	Ledus.S1G392300
Ledus.S1	AUGUSTUS	transcript	31668319	31669740	.	+	.	transcript_id "Ledus.S1G392300.t1"; gene_id "Ledus.S1G392300"
Ledus.S1	AUGUSTUS	start_codon	31668319	31668321	.	+	0	transcript_id "Ledus.S1G392300.t1"; gene_id "Ledus.S1G392300"
Ledus.S1	AUGUSTUS	CDS	31668319	31668782	0.96	+	0	transcript_id "Ledus.S1G392300.t1"; gene_id "Ledus.S1G392300"
Ledus.S1	AUGUSTUS	exon	31668319	31668782	.	+	.	transcript_id "Ledus.S1G392300.t1"; gene_id "Ledus.S1G392300"
Ledus.S1	AUGUSTUS	intron	31668783	31668869	.	+	.	transcript_id "Ledus.S1G392300.t1"; gene_id "Ledus.S1G392300"
Ledus.S1	AUGUSTUS	CDS	31668870	31669437	1	+	1	transcript_id "Ledus.S1G392300.t1"; gene_id "Ledus.S1G392300"
Ledus.S1	AUGUSTUS	exon	31668870	31669437	.	+	.	transcript_id "Ledus.S1G392300.t1"; gene_id "Ledus.S1G392300"
Ledus.S1	AUGUSTUS	intron	31669438	31669536	.	+	.	transcript_id "Ledus.S1G392300.t1"; gene_id "Ledus.S1G392300"
Ledus.S1	AUGUSTUS	CDS	31669537	31669740	1	+	0	transcript_id "Ledus.S1G392300.t1"; gene_id "Ledus.S1G392300"
Ledus.S1	AUGUSTUS	exon	31669537	31669740	.	+	.	transcript_id "Ledus.S1G392300.t1"; gene_id "Ledus.S1G392300"
Ledus.S1	AUGUSTUS	stop_codon	31669741	31669743	.	+	0	transcript_id "Ledus.S1G392300.t1"; gene_id "Ledus.S1G392300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1189.t1 is derived from g8050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8418909	8422517	.	-	.	Ledus.S2G107100
Ledus.S2	AUGUSTUS	transcript	8418909	8422517	.	-	.	transcript_id "Ledus.S2G107100.t1"; gene_id "Ledus.S2G107100"
Ledus.S2	AUGUSTUS	stop_codon	8418906	8418908	.	-	0	transcript_id "Ledus.S2G107100.t1"; gene_id "Ledus.S2G107100"
Ledus.S2	AUGUSTUS	CDS	8418909	8420669	1	-	0	transcript_id "Ledus.S2G107100.t1"; gene_id "Ledus.S2G107100"
Ledus.S2	AUGUSTUS	exon	8418909	8420669	.	-	.	transcript_id "Ledus.S2G107100.t1"; gene_id "Ledus.S2G107100"
Ledus.S2	AUGUSTUS	intron	8420670	8420768	.	-	.	transcript_id "Ledus.S2G107100.t1"; gene_id "Ledus.S2G107100"
Ledus.S2	AUGUSTUS	CDS	8420769	8422517	1	-	0	transcript_id "Ledus.S2G107100.t1"; gene_id "Ledus.S2G107100"
Ledus.S2	AUGUSTUS	exon	8420769	8422517	.	-	.	transcript_id "Ledus.S2G107100.t1"; gene_id "Ledus.S2G107100"
Ledus.S2	AUGUSTUS	start_codon	8422515	8422517	.	-	0	transcript_id "Ledus.S2G107100.t1"; gene_id "Ledus.S2G107100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11224.t1 is derived from g4842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2813852	2815506	.	+	.	Ledus.S4G038000
Ledus.S4	AUGUSTUS	transcript	2813852	2815506	.	+	.	transcript_id "Ledus.S4G038000.t1"; gene_id "Ledus.S4G038000"
Ledus.S4	AUGUSTUS	start_codon	2813852	2813854	.	+	0	transcript_id "Ledus.S4G038000.t1"; gene_id "Ledus.S4G038000"
Ledus.S4	AUGUSTUS	CDS	2813852	2814748	0.66	+	0	transcript_id "Ledus.S4G038000.t1"; gene_id "Ledus.S4G038000"
Ledus.S4	AUGUSTUS	exon	2813852	2814748	.	+	.	transcript_id "Ledus.S4G038000.t1"; gene_id "Ledus.S4G038000"
Ledus.S4	AUGUSTUS	intron	2814749	2814858	.	+	.	transcript_id "Ledus.S4G038000.t1"; gene_id "Ledus.S4G038000"
Ledus.S4	AUGUSTUS	CDS	2814859	2814963	1	+	0	transcript_id "Ledus.S4G038000.t1"; gene_id "Ledus.S4G038000"
Ledus.S4	AUGUSTUS	exon	2814859	2814963	.	+	.	transcript_id "Ledus.S4G038000.t1"; gene_id "Ledus.S4G038000"
Ledus.S4	AUGUSTUS	intron	2814964	2815053	.	+	.	transcript_id "Ledus.S4G038000.t1"; gene_id "Ledus.S4G038000"
Ledus.S4	AUGUSTUS	CDS	2815054	2815506	0.72	+	0	transcript_id "Ledus.S4G038000.t1"; gene_id "Ledus.S4G038000"
Ledus.S4	AUGUSTUS	exon	2815054	2815506	.	+	.	transcript_id "Ledus.S4G038000.t1"; gene_id "Ledus.S4G038000"
Ledus.S4	AUGUSTUS	stop_codon	2815507	2815509	.	+	0	transcript_id "Ledus.S4G038000.t1"; gene_id "Ledus.S4G038000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12209.t1 is derived from g5828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10396769	10398609	.	+	.	Ledus.S4G136500
Ledus.S4	AUGUSTUS	transcript	10396769	10398609	.	+	.	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	start_codon	10396769	10396771	.	+	0	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	CDS	10396769	10396867	0.67	+	0	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	exon	10396769	10396867	.	+	.	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	intron	10396868	10397091	.	+	.	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	CDS	10397092	10397310	0.87	+	0	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	exon	10397092	10397310	.	+	.	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	intron	10397311	10397396	.	+	.	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	CDS	10397397	10397558	1	+	0	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	exon	10397397	10397558	.	+	.	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	intron	10397559	10397627	.	+	.	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	CDS	10397628	10397681	1	+	0	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	exon	10397628	10397681	.	+	.	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	intron	10397682	10397960	.	+	.	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	CDS	10397961	10398107	1	+	0	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	exon	10397961	10398107	.	+	.	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	intron	10398108	10398201	.	+	.	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	CDS	10398202	10398609	0.99	+	0	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	exon	10398202	10398609	.	+	.	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
Ledus.S4	AUGUSTUS	stop_codon	10398610	10398612	.	+	0	transcript_id "Ledus.S4G136500.t1"; gene_id "Ledus.S4G136500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9620.t1 is derived from g10650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8443459	8444637	.	-	.	Ledus.S3G109700
Ledus.S3	AUGUSTUS	transcript	8443459	8444637	.	-	.	transcript_id "Ledus.S3G109700.t1"; gene_id "Ledus.S3G109700"
Ledus.S3	AUGUSTUS	stop_codon	8443456	8443458	.	-	0	transcript_id "Ledus.S3G109700.t1"; gene_id "Ledus.S3G109700"
Ledus.S3	AUGUSTUS	CDS	8443459	8444637	0.93	-	0	transcript_id "Ledus.S3G109700.t1"; gene_id "Ledus.S3G109700"
Ledus.S3	AUGUSTUS	exon	8443459	8444637	.	-	.	transcript_id "Ledus.S3G109700.t1"; gene_id "Ledus.S3G109700"
Ledus.S3	AUGUSTUS	start_codon	8444635	8444637	.	-	0	transcript_id "Ledus.S3G109700.t1"; gene_id "Ledus.S3G109700"
# This transcript jg10304.t2 is derived from g11334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10304.t3 is derived from g11334.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10305.t1 is derived from g11335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14161366	14165710	.	-	.	Ledus.S3G178200
Ledus.S3	AUGUSTUS	transcript	14161366	14165710	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	stop_codon	14161363	14161365	.	-	0	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	CDS	14161366	14161478	0.81	-	2	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	exon	14161366	14161478	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	intron	14161479	14161611	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	CDS	14161612	14162028	0.95	-	2	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	exon	14161612	14162028	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	intron	14162029	14162160	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	CDS	14162161	14162404	0.97	-	0	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	exon	14162161	14162404	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	intron	14162405	14162590	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	CDS	14162591	14163040	0.98	-	0	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	exon	14162591	14163040	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	intron	14163041	14163415	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	CDS	14163416	14164173	0.95	-	2	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	exon	14163416	14164173	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	intron	14164174	14164307	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	CDS	14164308	14164670	0.97	-	2	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	exon	14164308	14164670	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	intron	14164671	14164778	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	CDS	14164779	14165028	0.97	-	0	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	exon	14164779	14165028	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	intron	14165029	14165182	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	CDS	14165183	14165710	0.96	-	0	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	exon	14165183	14165710	.	-	.	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
Ledus.S3	AUGUSTUS	start_codon	14165708	14165710	.	-	0	transcript_id "Ledus.S3G178200.t1"; gene_id "Ledus.S3G178200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5337.t1 is derived from g2776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23424442	23425920	.	+	.	Ledus.S1G275800
Ledus.S1	AUGUSTUS	transcript	23424442	23425920	.	+	.	transcript_id "Ledus.S1G275800.t1"; gene_id "Ledus.S1G275800"
Ledus.S1	AUGUSTUS	start_codon	23424442	23424444	.	+	0	transcript_id "Ledus.S1G275800.t1"; gene_id "Ledus.S1G275800"
Ledus.S1	AUGUSTUS	CDS	23424442	23425920	0.5	+	0	transcript_id "Ledus.S1G275800.t1"; gene_id "Ledus.S1G275800"
Ledus.S1	AUGUSTUS	exon	23424442	23425920	.	+	.	transcript_id "Ledus.S1G275800.t1"; gene_id "Ledus.S1G275800"
Ledus.S1	AUGUSTUS	stop_codon	23425921	23425923	.	+	0	transcript_id "Ledus.S1G275800.t1"; gene_id "Ledus.S1G275800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3636.t1 is derived from g1072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10320932	10322790	.	-	.	Ledus.S1G105700
Ledus.S1	AUGUSTUS	transcript	10320932	10322790	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	stop_codon	10320929	10320931	.	-	0	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	CDS	10320932	10321126	0.82	-	0	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	exon	10320932	10321126	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	intron	10321127	10321229	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	CDS	10321230	10321328	0.83	-	0	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	exon	10321230	10321328	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	intron	10321329	10321436	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	CDS	10321437	10321524	0.97	-	1	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	exon	10321437	10321524	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	intron	10321525	10321607	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	CDS	10321608	10321662	1	-	2	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	exon	10321608	10321662	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	intron	10321663	10321823	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	CDS	10321824	10321961	1	-	2	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	exon	10321824	10321961	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	intron	10321962	10322319	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	CDS	10322320	10322396	0.91	-	1	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	exon	10322320	10322396	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	intron	10322397	10322497	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	CDS	10322498	10322790	0.9	-	0	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	exon	10322498	10322790	.	-	.	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
Ledus.S1	AUGUSTUS	start_codon	10322788	10322790	.	-	0	transcript_id "Ledus.S1G105700.t1"; gene_id "Ledus.S1G105700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3467.t1 is derived from g902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8509946	8514064	.	-	.	Ledus.S1G088800
Ledus.S1	AUGUSTUS	transcript	8509946	8514064	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	stop_codon	8509943	8509945	.	-	0	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	CDS	8509946	8510006	0.32	-	1	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	exon	8509946	8510006	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	intron	8510007	8510141	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	CDS	8510142	8510255	0.7	-	1	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	exon	8510142	8510255	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	intron	8510256	8510369	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	CDS	8510370	8510458	0.91	-	0	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	exon	8510370	8510458	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	intron	8510459	8510666	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	CDS	8510667	8510822	0.99	-	0	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	exon	8510667	8510822	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	intron	8510823	8510997	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	CDS	8510998	8511208	1	-	1	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	exon	8510998	8511208	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	intron	8511209	8511329	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	CDS	8511330	8511829	0.99	-	0	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	exon	8511330	8511829	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	intron	8511830	8511921	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	CDS	8511922	8512274	0.97	-	2	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	exon	8511922	8512274	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	intron	8512275	8512391	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	CDS	8512392	8512461	1	-	0	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	exon	8512392	8512461	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	intron	8512462	8512554	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	CDS	8512555	8512988	0.89	-	2	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	exon	8512555	8512988	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	intron	8512989	8513222	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	CDS	8513223	8513395	0.44	-	1	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	exon	8513223	8513395	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	intron	8513396	8513629	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	CDS	8513630	8513761	0.43	-	1	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	exon	8513630	8513761	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	intron	8513762	8513867	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	CDS	8513868	8514064	0.64	-	0	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	exon	8513868	8514064	.	-	.	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
Ledus.S1	AUGUSTUS	start_codon	8514062	8514064	.	-	0	transcript_id "Ledus.S1G088800.t1"; gene_id "Ledus.S1G088800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5775.t1 is derived from g3217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26701760	26702393	.	+	.	Ledus.S1G319600
Ledus.S1	AUGUSTUS	transcript	26701760	26702393	.	+	.	transcript_id "Ledus.S1G319600.t1"; gene_id "Ledus.S1G319600"
Ledus.S1	AUGUSTUS	start_codon	26701760	26701762	.	+	0	transcript_id "Ledus.S1G319600.t1"; gene_id "Ledus.S1G319600"
Ledus.S1	AUGUSTUS	CDS	26701760	26701827	0.35	+	0	transcript_id "Ledus.S1G319600.t1"; gene_id "Ledus.S1G319600"
Ledus.S1	AUGUSTUS	exon	26701760	26701827	.	+	.	transcript_id "Ledus.S1G319600.t1"; gene_id "Ledus.S1G319600"
Ledus.S1	AUGUSTUS	intron	26701828	26701963	.	+	.	transcript_id "Ledus.S1G319600.t1"; gene_id "Ledus.S1G319600"
Ledus.S1	AUGUSTUS	CDS	26701964	26702393	1	+	1	transcript_id "Ledus.S1G319600.t1"; gene_id "Ledus.S1G319600"
Ledus.S1	AUGUSTUS	exon	26701964	26702393	.	+	.	transcript_id "Ledus.S1G319600.t1"; gene_id "Ledus.S1G319600"
Ledus.S1	AUGUSTUS	stop_codon	26702394	26702396	.	+	0	transcript_id "Ledus.S1G319600.t1"; gene_id "Ledus.S1G319600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7295.t1 is derived from g11966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	843354	844741	.	-	.	Ledus.S5G007300
Ledus.S5	AUGUSTUS	transcript	843354	844741	.	-	.	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	stop_codon	843351	843353	.	-	0	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	CDS	843354	843473	1	-	0	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	exon	843354	843473	.	-	.	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	intron	843474	843612	.	-	.	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	CDS	843613	844091	1	-	2	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	exon	843613	844091	.	-	.	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	intron	844092	844183	.	-	.	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	CDS	844184	844625	1	-	0	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	exon	844184	844625	.	-	.	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	intron	844626	844708	.	-	.	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	CDS	844709	844741	0.62	-	0	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	exon	844709	844741	.	-	.	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
Ledus.S5	AUGUSTUS	start_codon	844739	844741	.	-	0	transcript_id "Ledus.S5G007300.t1"; gene_id "Ledus.S5G007300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8785.t1 is derived from g9815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1968627	1971080	.	-	.	Ledus.S3G026200
Ledus.S3	AUGUSTUS	transcript	1968627	1971080	.	-	.	transcript_id "Ledus.S3G026200.t1"; gene_id "Ledus.S3G026200"
Ledus.S3	AUGUSTUS	stop_codon	1968624	1968626	.	-	0	transcript_id "Ledus.S3G026200.t1"; gene_id "Ledus.S3G026200"
Ledus.S3	AUGUSTUS	CDS	1968627	1971080	0.57	-	0	transcript_id "Ledus.S3G026200.t1"; gene_id "Ledus.S3G026200"
Ledus.S3	AUGUSTUS	exon	1968627	1971080	.	-	.	transcript_id "Ledus.S3G026200.t1"; gene_id "Ledus.S3G026200"
Ledus.S3	AUGUSTUS	start_codon	1971078	1971080	.	-	0	transcript_id "Ledus.S3G026200.t1"; gene_id "Ledus.S3G026200"
# This transcript jg3740.t2 is derived from g1176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3740.t3 is derived from g1176.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3741.t1 is derived from g1177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11466037	11467656	.	-	.	Ledus.S1G116200
Ledus.S1	AUGUSTUS	transcript	11466037	11467656	.	-	.	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	stop_codon	11466034	11466036	.	-	0	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	CDS	11466037	11466460	0.75	-	1	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	exon	11466037	11466460	.	-	.	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	intron	11466461	11466571	.	-	.	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	CDS	11466572	11466678	0.34	-	0	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	exon	11466572	11466678	.	-	.	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	intron	11466679	11466819	.	-	.	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	CDS	11466820	11467085	0.27	-	2	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	exon	11466820	11467085	.	-	.	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	intron	11467086	11467165	.	-	.	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	CDS	11467166	11467527	0.43	-	1	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	exon	11467166	11467527	.	-	.	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	intron	11467528	11467630	.	-	.	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	CDS	11467631	11467656	0.99	-	0	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	exon	11467631	11467656	.	-	.	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
Ledus.S1	AUGUSTUS	start_codon	11467654	11467656	.	-	0	transcript_id "Ledus.S1G116200.t1"; gene_id "Ledus.S1G116200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9788.t1 is derived from g10818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9831676	9833669	.	-	.	Ledus.S3G126500
Ledus.S3	AUGUSTUS	transcript	9831676	9833669	.	-	.	transcript_id "Ledus.S3G126500.t1"; gene_id "Ledus.S3G126500"
Ledus.S3	AUGUSTUS	stop_codon	9831673	9831675	.	-	0	transcript_id "Ledus.S3G126500.t1"; gene_id "Ledus.S3G126500"
Ledus.S3	AUGUSTUS	CDS	9831676	9832686	1	-	0	transcript_id "Ledus.S3G126500.t1"; gene_id "Ledus.S3G126500"
Ledus.S3	AUGUSTUS	exon	9831676	9832686	.	-	.	transcript_id "Ledus.S3G126500.t1"; gene_id "Ledus.S3G126500"
Ledus.S3	AUGUSTUS	intron	9832687	9832913	.	-	.	transcript_id "Ledus.S3G126500.t1"; gene_id "Ledus.S3G126500"
Ledus.S3	AUGUSTUS	CDS	9832914	9833669	0.68	-	0	transcript_id "Ledus.S3G126500.t1"; gene_id "Ledus.S3G126500"
Ledus.S3	AUGUSTUS	exon	9832914	9833669	.	-	.	transcript_id "Ledus.S3G126500.t1"; gene_id "Ledus.S3G126500"
Ledus.S3	AUGUSTUS	start_codon	9833667	9833669	.	-	0	transcript_id "Ledus.S3G126500.t1"; gene_id "Ledus.S3G126500"
# This transcript jg8938.t2 is derived from g9968.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8938.t3 is derived from g9968.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8939.t1 is derived from g9969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3324424	3328321	.	+	.	Ledus.S3G041600
Ledus.S3	AUGUSTUS	transcript	3324424	3328321	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	start_codon	3324424	3324426	.	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3324424	3324446	0.93	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3324424	3324446	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3324447	3324707	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3324708	3324783	0.95	+	1	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3324708	3324783	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3324784	3325058	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3325059	3325635	0.99	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3325059	3325635	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3325636	3325792	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3325793	3325929	1	+	2	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3325793	3325929	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3325930	3326053	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3326054	3326203	1	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3326054	3326203	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3326204	3326300	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3326301	3326402	1	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3326301	3326402	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3326403	3326536	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3326537	3326701	0.83	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3326537	3326701	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3326702	3326804	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3326805	3326915	0.83	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3326805	3326915	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3326916	3327053	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3327054	3327151	1	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3327054	3327151	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3327152	3327270	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3327271	3327394	0.87	+	1	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3327271	3327394	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3327395	3327482	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3327483	3327572	1	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3327483	3327572	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3327573	3327696	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3327697	3327741	1	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3327697	3327741	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3327742	3327863	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3327864	3328184	0.85	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3327864	3328184	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	intron	3328185	3328267	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	CDS	3328268	3328321	0.98	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	exon	3328268	3328321	.	+	.	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
Ledus.S3	AUGUSTUS	stop_codon	3328322	3328324	.	+	0	transcript_id "Ledus.S3G041600.t1"; gene_id "Ledus.S3G041600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11255.t1 is derived from g4873.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2969917	2972147	.	+	.	Ledus.S4G041100
Ledus.S4	AUGUSTUS	transcript	2969917	2972147	.	+	.	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	start_codon	2969917	2969919	.	+	0	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	CDS	2969917	2969973	0.62	+	0	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	exon	2969917	2969973	.	+	.	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	intron	2969974	2970205	.	+	.	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	CDS	2970206	2970247	0.54	+	0	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	exon	2970206	2970247	.	+	.	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	intron	2970248	2970405	.	+	.	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	CDS	2970406	2970693	0.32	+	0	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	exon	2970406	2970693	.	+	.	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	intron	2970694	2970788	.	+	.	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	CDS	2970789	2971045	1	+	0	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	exon	2970789	2971045	.	+	.	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	intron	2971046	2971127	.	+	.	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	CDS	2971128	2971302	1	+	1	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	exon	2971128	2971302	.	+	.	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	intron	2971303	2971397	.	+	.	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	CDS	2971398	2972147	0.59	+	0	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	exon	2971398	2972147	.	+	.	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	stop_codon	2972148	2972150	.	+	0	transcript_id "Ledus.S4G041100.t1"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	transcript	2969917	2972147	.	+	.	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	start_codon	2969917	2969919	.	+	0	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	CDS	2969917	2970003	0.47	+	0	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	exon	2969917	2970003	.	+	.	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	intron	2970004	2970205	.	+	.	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	CDS	2970206	2970247	0.55	+	0	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	exon	2970206	2970247	.	+	.	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	intron	2970248	2970405	.	+	.	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	CDS	2970406	2970693	0.31	+	0	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	exon	2970406	2970693	.	+	.	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	intron	2970694	2970788	.	+	.	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	CDS	2970789	2971045	1	+	0	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	exon	2970789	2971045	.	+	.	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	intron	2971046	2971127	.	+	.	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	CDS	2971128	2971302	1	+	1	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	exon	2971128	2971302	.	+	.	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	intron	2971303	2971397	.	+	.	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	CDS	2971398	2972147	0.51	+	0	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	exon	2971398	2972147	.	+	.	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
Ledus.S4	AUGUSTUS	stop_codon	2972148	2972150	.	+	0	transcript_id "Ledus.S4G041100.t2"; gene_id "Ledus.S4G041100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9697.t1 is derived from g10727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9094491	9096419	.	+	.	Ledus.S3G117400
Ledus.S3	AUGUSTUS	transcript	9094491	9096419	.	+	.	transcript_id "Ledus.S3G117400.t1"; gene_id "Ledus.S3G117400"
Ledus.S3	AUGUSTUS	start_codon	9094491	9094493	.	+	0	transcript_id "Ledus.S3G117400.t1"; gene_id "Ledus.S3G117400"
Ledus.S3	AUGUSTUS	CDS	9094491	9096419	0.98	+	0	transcript_id "Ledus.S3G117400.t1"; gene_id "Ledus.S3G117400"
Ledus.S3	AUGUSTUS	exon	9094491	9096419	.	+	.	transcript_id "Ledus.S3G117400.t1"; gene_id "Ledus.S3G117400"
Ledus.S3	AUGUSTUS	stop_codon	9096420	9096422	.	+	0	transcript_id "Ledus.S3G117400.t1"; gene_id "Ledus.S3G117400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5493.t1 is derived from g2932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24545544	24547356	.	-	.	Ledus.S1G291400
Ledus.S1	AUGUSTUS	transcript	24545544	24547356	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	stop_codon	24545541	24545543	.	-	0	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	CDS	24545544	24545759	0.84	-	0	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	exon	24545544	24545759	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	intron	24545760	24545845	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	CDS	24545846	24545965	0.98	-	0	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	exon	24545846	24545965	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	intron	24545966	24546082	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	CDS	24546083	24546184	0.66	-	0	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	exon	24546083	24546184	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	intron	24546185	24546305	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	CDS	24546306	24546365	0.94	-	0	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	exon	24546306	24546365	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	intron	24546366	24546492	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	CDS	24546493	24546545	1	-	2	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	exon	24546493	24546545	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	intron	24546546	24546708	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	CDS	24546709	24546794	1	-	1	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	exon	24546709	24546794	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	intron	24546795	24546887	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	CDS	24546888	24546932	1	-	1	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	exon	24546888	24546932	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	intron	24546933	24547007	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	CDS	24547008	24547134	1	-	2	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	exon	24547008	24547134	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	intron	24547135	24547217	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	CDS	24547218	24547356	0.9	-	0	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	exon	24547218	24547356	.	-	.	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
Ledus.S1	AUGUSTUS	start_codon	24547354	24547356	.	-	0	transcript_id "Ledus.S1G291400.t1"; gene_id "Ledus.S1G291400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7196.t1 is derived from g6727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2071231	2074273	.	+	.	Ledus.C7G025700
Ledus.C7	AUGUSTUS	transcript	2071231	2074273	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	start_codon	2071231	2071233	.	+	0	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2071231	2071425	0.85	+	0	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2071231	2071425	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2071426	2071499	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2071500	2071632	1	+	0	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2071500	2071632	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2071633	2071726	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2071727	2071815	1	+	2	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2071727	2071815	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2071816	2071946	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2071947	2072004	1	+	0	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2071947	2072004	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2072005	2072091	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2072092	2072244	1	+	2	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2072092	2072244	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2072245	2072315	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2072316	2072464	1	+	2	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2072316	2072464	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2072465	2072557	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2072558	2072677	1	+	0	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2072558	2072677	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2072678	2072849	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2072850	2073063	1	+	0	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2072850	2073063	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2073064	2073204	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2073205	2073307	1	+	2	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2073205	2073307	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2073308	2073427	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2073428	2073475	0.99	+	1	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2073428	2073475	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2073476	2073557	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2073558	2073603	1	+	1	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2073558	2073603	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2073604	2073697	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2073698	2073885	1	+	0	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2073698	2073885	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2073886	2073972	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2073973	2074135	1	+	1	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2073973	2074135	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	intron	2074136	2074222	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	CDS	2074223	2074273	0.92	+	0	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	exon	2074223	2074273	.	+	.	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
Ledus.C7	AUGUSTUS	stop_codon	2074274	2074276	.	+	0	transcript_id "Ledus.C7G025700.t1"; gene_id "Ledus.C7G025700"
# This transcript jg11818.t2 is derived from g5437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11819.t1 is derived from g5438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6970736	6971553	.	+	.	Ledus.S4G097500
Ledus.S4	AUGUSTUS	transcript	6970736	6971553	.	+	.	transcript_id "Ledus.S4G097500.t1"; gene_id "Ledus.S4G097500"
Ledus.S4	AUGUSTUS	start_codon	6970736	6970738	.	+	0	transcript_id "Ledus.S4G097500.t1"; gene_id "Ledus.S4G097500"
Ledus.S4	AUGUSTUS	CDS	6970736	6971149	0.98	+	0	transcript_id "Ledus.S4G097500.t1"; gene_id "Ledus.S4G097500"
Ledus.S4	AUGUSTUS	exon	6970736	6971149	.	+	.	transcript_id "Ledus.S4G097500.t1"; gene_id "Ledus.S4G097500"
Ledus.S4	AUGUSTUS	intron	6971150	6971370	.	+	.	transcript_id "Ledus.S4G097500.t1"; gene_id "Ledus.S4G097500"
Ledus.S4	AUGUSTUS	CDS	6971371	6971553	1	+	0	transcript_id "Ledus.S4G097500.t1"; gene_id "Ledus.S4G097500"
Ledus.S4	AUGUSTUS	exon	6971371	6971553	.	+	.	transcript_id "Ledus.S4G097500.t1"; gene_id "Ledus.S4G097500"
Ledus.S4	AUGUSTUS	stop_codon	6971554	6971556	.	+	0	transcript_id "Ledus.S4G097500.t1"; gene_id "Ledus.S4G097500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg632.t1 is derived from g7493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3788920	3790305	.	-	.	Ledus.S2G051400
Ledus.S2	AUGUSTUS	transcript	3788920	3790305	.	-	.	transcript_id "Ledus.S2G051400.t1"; gene_id "Ledus.S2G051400"
Ledus.S2	AUGUSTUS	stop_codon	3788917	3788919	.	-	0	transcript_id "Ledus.S2G051400.t1"; gene_id "Ledus.S2G051400"
Ledus.S2	AUGUSTUS	CDS	3788920	3790305	0.98	-	0	transcript_id "Ledus.S2G051400.t1"; gene_id "Ledus.S2G051400"
Ledus.S2	AUGUSTUS	exon	3788920	3790305	.	-	.	transcript_id "Ledus.S2G051400.t1"; gene_id "Ledus.S2G051400"
Ledus.S2	AUGUSTUS	start_codon	3790303	3790305	.	-	0	transcript_id "Ledus.S2G051400.t1"; gene_id "Ledus.S2G051400"
# This transcript jg9315.t2 is derived from g10345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9316.t1 is derived from g10346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6023010	6024538	.	-	.	Ledus.S3G079300
Ledus.S3	AUGUSTUS	transcript	6023010	6024538	.	-	.	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	stop_codon	6023007	6023009	.	-	0	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	CDS	6023010	6023030	1	-	0	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	exon	6023010	6023030	.	-	.	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	intron	6023031	6023336	.	-	.	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	CDS	6023337	6023561	1	-	0	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	exon	6023337	6023561	.	-	.	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	intron	6023562	6023672	.	-	.	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	CDS	6023673	6024232	0.8	-	2	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	exon	6023673	6024232	.	-	.	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	intron	6024233	6024318	.	-	.	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	CDS	6024319	6024538	0.68	-	0	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	exon	6024319	6024538	.	-	.	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	start_codon	6024536	6024538	.	-	0	transcript_id "Ledus.S3G079300.t1"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	transcript	6023010	6024538	.	-	.	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	stop_codon	6023007	6023009	.	-	0	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	CDS	6023010	6023030	1	-	0	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	exon	6023010	6023030	.	-	.	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	intron	6023031	6023336	.	-	.	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	CDS	6023337	6023561	1	-	0	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	exon	6023337	6023561	.	-	.	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	intron	6023562	6023672	.	-	.	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	CDS	6023673	6024232	0.82	-	2	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	exon	6023673	6024232	.	-	.	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	intron	6024233	6024360	.	-	.	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	CDS	6024361	6024538	0.66	-	0	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	exon	6024361	6024538	.	-	.	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
Ledus.S3	AUGUSTUS	start_codon	6024536	6024538	.	-	0	transcript_id "Ledus.S3G079300.t2"; gene_id "Ledus.S3G079300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12299.t1 is derived from g5919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11103485	11106796	.	-	.	Ledus.S4G145500
Ledus.S4	AUGUSTUS	transcript	11103485	11106796	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	stop_codon	11103482	11103484	.	-	0	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	CDS	11103485	11103518	0.86	-	1	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	exon	11103485	11103518	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	intron	11103519	11103629	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	CDS	11103630	11103773	0.93	-	1	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	exon	11103630	11103773	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	intron	11103774	11104000	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	CDS	11104001	11104073	1	-	2	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	exon	11104001	11104073	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	intron	11104074	11104210	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	CDS	11104211	11104370	1	-	0	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	exon	11104211	11104370	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	intron	11104371	11104480	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	CDS	11104481	11104592	1	-	1	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	exon	11104481	11104592	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	intron	11104593	11104688	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	CDS	11104689	11104786	1	-	0	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	exon	11104689	11104786	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	intron	11104787	11104873	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	CDS	11104874	11105291	1	-	1	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	exon	11104874	11105291	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	intron	11105292	11105430	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	CDS	11105431	11105582	1	-	0	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	exon	11105431	11105582	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	intron	11105583	11105828	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	CDS	11105829	11106037	1	-	2	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	exon	11105829	11106037	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	intron	11106038	11106284	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	CDS	11106285	11106372	1	-	0	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	exon	11106285	11106372	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	intron	11106373	11106466	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	CDS	11106467	11106796	0.99	-	0	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	exon	11106467	11106796	.	-	.	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
Ledus.S4	AUGUSTUS	start_codon	11106794	11106796	.	-	0	transcript_id "Ledus.S4G145500.t1"; gene_id "Ledus.S4G145500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11968.t1 is derived from g5587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8061989	8064146	.	+	.	Ledus.S4G112400
Ledus.S4	AUGUSTUS	transcript	8062285	8064146	.	+	.	transcript_id "Ledus.S4G112400.t1"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	start_codon	8062285	8062287	.	+	0	transcript_id "Ledus.S4G112400.t1"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	CDS	8062285	8062300	0.98	+	0	transcript_id "Ledus.S4G112400.t1"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	exon	8062285	8062300	.	+	.	transcript_id "Ledus.S4G112400.t1"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	intron	8062301	8062472	.	+	.	transcript_id "Ledus.S4G112400.t1"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	CDS	8062473	8063746	0.94	+	2	transcript_id "Ledus.S4G112400.t1"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	exon	8062473	8063746	.	+	.	transcript_id "Ledus.S4G112400.t1"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	intron	8063747	8063909	.	+	.	transcript_id "Ledus.S4G112400.t1"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	CDS	8063910	8064146	0.95	+	0	transcript_id "Ledus.S4G112400.t1"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	exon	8063910	8064146	.	+	.	transcript_id "Ledus.S4G112400.t1"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	stop_codon	8064147	8064149	.	+	0	transcript_id "Ledus.S4G112400.t1"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	transcript	8061989	8064146	.	+	.	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	start_codon	8061989	8061991	.	+	0	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	CDS	8061989	8062014	0.34	+	0	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	exon	8061989	8062014	.	+	.	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	intron	8062015	8062071	.	+	.	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	CDS	8062072	8062112	0.63	+	1	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	exon	8062072	8062112	.	+	.	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	intron	8062113	8062472	.	+	.	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	CDS	8062473	8063746	0.62	+	2	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	exon	8062473	8063746	.	+	.	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	intron	8063747	8063909	.	+	.	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	CDS	8063910	8064146	0.94	+	0	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	exon	8063910	8064146	.	+	.	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
Ledus.S4	AUGUSTUS	stop_codon	8064147	8064149	.	+	0	transcript_id "Ledus.S4G112400.t2"; gene_id "Ledus.S4G112400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11959.t1 is derived from g5578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8032099	8035414	.	-	.	Ledus.S4G111500
Ledus.S4	AUGUSTUS	transcript	8032099	8035414	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	stop_codon	8032096	8032098	.	-	0	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8032099	8032629	0.43	-	0	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8032099	8032629	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	intron	8032630	8032736	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8032737	8032771	0.39	-	2	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8032737	8032771	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	intron	8032772	8032901	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8032902	8033013	0.48	-	0	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8032902	8033013	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	intron	8033014	8033136	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8033137	8033271	0.55	-	0	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8033137	8033271	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	intron	8033272	8033346	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8033347	8033472	1	-	0	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8033347	8033472	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	intron	8033473	8033555	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8033556	8033710	1	-	2	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8033556	8033710	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	intron	8033711	8033801	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8033802	8033916	1	-	0	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8033802	8033916	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	intron	8033917	8033992	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8033993	8034143	1	-	1	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8033993	8034143	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	intron	8034144	8034235	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8034236	8034330	1	-	0	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8034236	8034330	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	intron	8034331	8034410	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8034411	8034496	1	-	2	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8034411	8034496	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	intron	8034497	8034923	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8034924	8035054	1	-	1	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8034924	8035054	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	intron	8035055	8035135	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8035136	8035214	1	-	2	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8035136	8035214	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	intron	8035215	8035287	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	CDS	8035288	8035414	1	-	0	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	exon	8035288	8035414	.	-	.	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
Ledus.S4	AUGUSTUS	start_codon	8035412	8035414	.	-	0	transcript_id "Ledus.S4G111500.t1"; gene_id "Ledus.S4G111500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3514.t1 is derived from g949.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8981078	8982983	.	+	.	Ledus.S1G093500
Ledus.S1	AUGUSTUS	transcript	8981078	8982983	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	start_codon	8981078	8981080	.	+	0	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	CDS	8981078	8981359	0.97	+	0	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	exon	8981078	8981359	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	intron	8981360	8981434	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	CDS	8981435	8981453	0.99	+	0	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	exon	8981435	8981453	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	intron	8981454	8981599	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	CDS	8981600	8981661	0.55	+	2	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	exon	8981600	8981661	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	intron	8981662	8981799	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	CDS	8981800	8981898	0.93	+	0	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	exon	8981800	8981898	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	intron	8981899	8981988	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	CDS	8981989	8982053	0.69	+	0	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	exon	8981989	8982053	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	intron	8982054	8982123	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	CDS	8982124	8982454	0.58	+	1	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	exon	8982124	8982454	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	intron	8982455	8982527	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	CDS	8982528	8982983	0.58	+	0	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	exon	8982528	8982983	.	+	.	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
Ledus.S1	AUGUSTUS	stop_codon	8982984	8982986	.	+	0	transcript_id "Ledus.S1G093500.t1"; gene_id "Ledus.S1G093500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4507.t1 is derived from g1943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17413551	17415660	.	-	.	Ledus.S1G192800
Ledus.S1	AUGUSTUS	transcript	17413551	17415660	.	-	.	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	stop_codon	17413548	17413550	.	-	0	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	CDS	17413551	17413572	0.99	-	1	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	exon	17413551	17413572	.	-	.	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	intron	17413573	17413750	.	-	.	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	CDS	17413751	17413942	0.55	-	1	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	exon	17413751	17413942	.	-	.	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	intron	17413943	17414282	.	-	.	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	CDS	17414283	17414747	1	-	1	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	exon	17414283	17414747	.	-	.	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	intron	17414748	17414887	.	-	.	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	CDS	17414888	17414977	1	-	1	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	exon	17414888	17414977	.	-	.	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	intron	17414978	17415119	.	-	.	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	CDS	17415120	17415187	1	-	0	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	exon	17415120	17415187	.	-	.	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	intron	17415188	17415633	.	-	.	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	CDS	17415634	17415660	0.96	-	0	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	exon	17415634	17415660	.	-	.	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
Ledus.S1	AUGUSTUS	start_codon	17415658	17415660	.	-	0	transcript_id "Ledus.S1G192800.t1"; gene_id "Ledus.S1G192800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11169.t1 is derived from g4787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2344031	2347539	.	-	.	Ledus.S4G032500
Ledus.S4	AUGUSTUS	transcript	2344031	2347539	.	-	.	transcript_id "Ledus.S4G032500.t1"; gene_id "Ledus.S4G032500"
Ledus.S4	AUGUSTUS	stop_codon	2344028	2344030	.	-	0	transcript_id "Ledus.S4G032500.t1"; gene_id "Ledus.S4G032500"
Ledus.S4	AUGUSTUS	CDS	2344031	2344555	0.92	-	0	transcript_id "Ledus.S4G032500.t1"; gene_id "Ledus.S4G032500"
Ledus.S4	AUGUSTUS	exon	2344031	2344555	.	-	.	transcript_id "Ledus.S4G032500.t1"; gene_id "Ledus.S4G032500"
Ledus.S4	AUGUSTUS	intron	2344556	2345490	.	-	.	transcript_id "Ledus.S4G032500.t1"; gene_id "Ledus.S4G032500"
Ledus.S4	AUGUSTUS	CDS	2345491	2347539	0.03	-	0	transcript_id "Ledus.S4G032500.t1"; gene_id "Ledus.S4G032500"
Ledus.S4	AUGUSTUS	exon	2345491	2347539	.	-	.	transcript_id "Ledus.S4G032500.t1"; gene_id "Ledus.S4G032500"
Ledus.S4	AUGUSTUS	start_codon	2347537	2347539	.	-	0	transcript_id "Ledus.S4G032500.t1"; gene_id "Ledus.S4G032500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3490.t1 is derived from g925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8699464	8703313	.	-	.	Ledus.S1G091100
Ledus.S1	AUGUSTUS	transcript	8699464	8703313	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	stop_codon	8699461	8699463	.	-	0	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	CDS	8699464	8699604	0.99	-	0	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	exon	8699464	8699604	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	intron	8699605	8699727	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	CDS	8699728	8699809	1	-	1	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	exon	8699728	8699809	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	intron	8699810	8699891	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	CDS	8699892	8700160	1	-	0	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	exon	8699892	8700160	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	intron	8700161	8700298	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	CDS	8700299	8700439	1	-	0	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	exon	8700299	8700439	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	intron	8700440	8700556	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	CDS	8700557	8700742	0.98	-	0	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	exon	8700557	8700742	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	intron	8700743	8700846	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	CDS	8700847	8701083	0.83	-	0	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	exon	8700847	8701083	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	intron	8701084	8701269	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	CDS	8701270	8701485	1	-	0	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	exon	8701270	8701485	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	intron	8701486	8701596	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	CDS	8701597	8701927	0.99	-	1	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	exon	8701597	8701927	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	intron	8701928	8702119	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	CDS	8702120	8702232	1	-	0	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	exon	8702120	8702232	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	intron	8702233	8702463	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	CDS	8702464	8702772	1	-	0	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	exon	8702464	8702772	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	intron	8702773	8702854	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	CDS	8702855	8702973	0.69	-	2	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	exon	8702855	8702973	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	intron	8702974	8703078	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	CDS	8703079	8703313	0.96	-	0	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	exon	8703079	8703313	.	-	.	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
Ledus.S1	AUGUSTUS	start_codon	8703311	8703313	.	-	0	transcript_id "Ledus.S1G091100.t1"; gene_id "Ledus.S1G091100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8166.t1 is derived from g12837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9577386	9578225	.	+	.	Ledus.S5G094400
Ledus.S5	AUGUSTUS	transcript	9577386	9578225	.	+	.	transcript_id "Ledus.S5G094400.t1"; gene_id "Ledus.S5G094400"
Ledus.S5	AUGUSTUS	start_codon	9577386	9577388	.	+	0	transcript_id "Ledus.S5G094400.t1"; gene_id "Ledus.S5G094400"
Ledus.S5	AUGUSTUS	CDS	9577386	9577750	0.51	+	0	transcript_id "Ledus.S5G094400.t1"; gene_id "Ledus.S5G094400"
Ledus.S5	AUGUSTUS	exon	9577386	9577750	.	+	.	transcript_id "Ledus.S5G094400.t1"; gene_id "Ledus.S5G094400"
Ledus.S5	AUGUSTUS	intron	9577751	9577894	.	+	.	transcript_id "Ledus.S5G094400.t1"; gene_id "Ledus.S5G094400"
Ledus.S5	AUGUSTUS	CDS	9577895	9578225	0.76	+	1	transcript_id "Ledus.S5G094400.t1"; gene_id "Ledus.S5G094400"
Ledus.S5	AUGUSTUS	exon	9577895	9578225	.	+	.	transcript_id "Ledus.S5G094400.t1"; gene_id "Ledus.S5G094400"
Ledus.S5	AUGUSTUS	stop_codon	9578226	9578228	.	+	0	transcript_id "Ledus.S5G094400.t1"; gene_id "Ledus.S5G094400"
# This transcript jg3897.t2 is derived from g1333.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3898.t1 is derived from g1334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13475129	13478550	.	-	.	Ledus.S1G131900
Ledus.S1	AUGUSTUS	transcript	13475129	13478550	.	-	.	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	stop_codon	13475126	13475128	.	-	0	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	CDS	13475129	13475148	0.77	-	2	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	exon	13475129	13475148	.	-	.	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	intron	13475149	13475411	.	-	.	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	CDS	13475412	13475424	0.77	-	0	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	exon	13475412	13475424	.	-	.	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	intron	13475425	13475604	.	-	.	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	CDS	13475605	13475690	0.77	-	2	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	exon	13475605	13475690	.	-	.	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	intron	13475691	13475875	.	-	.	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	CDS	13475876	13477572	0.62	-	1	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	exon	13475876	13477572	.	-	.	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	intron	13477573	13477842	.	-	.	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	CDS	13477843	13477917	0.89	-	1	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	exon	13477843	13477917	.	-	.	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	intron	13477918	13478206	.	-	.	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	CDS	13478207	13478550	0.89	-	0	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	exon	13478207	13478550	.	-	.	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
Ledus.S1	AUGUSTUS	start_codon	13478548	13478550	.	-	0	transcript_id "Ledus.S1G131900.t1"; gene_id "Ledus.S1G131900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10854.t1 is derived from g4472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	107280	109844	.	+	.	Ledus.S4G001000
Ledus.S4	AUGUSTUS	transcript	107280	109844	.	+	.	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	start_codon	107280	107282	.	+	0	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	CDS	107280	107356	0.58	+	0	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	exon	107280	107356	.	+	.	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	intron	107357	107455	.	+	.	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	CDS	107456	107530	0.94	+	1	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	exon	107456	107530	.	+	.	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	intron	107531	107616	.	+	.	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	CDS	107617	107683	0.93	+	1	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	exon	107617	107683	.	+	.	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	intron	107684	107795	.	+	.	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	CDS	107796	109844	0.83	+	0	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	exon	107796	109844	.	+	.	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
Ledus.S4	AUGUSTUS	stop_codon	109845	109847	.	+	0	transcript_id "Ledus.S4G001000.t1"; gene_id "Ledus.S4G001000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3448.t1 is derived from g883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8414240	8415825	.	+	.	Ledus.S1G086900
Ledus.S1	AUGUSTUS	transcript	8414240	8415825	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	start_codon	8414240	8414242	.	+	0	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8414240	8414308	0.96	+	0	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8414240	8414308	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8414309	8414396	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8414397	8414453	0.96	+	0	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8414397	8414453	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8414454	8414584	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8414585	8414609	0.96	+	0	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8414585	8414609	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8414610	8414895	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8414896	8414943	1	+	2	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8414896	8414943	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8414944	8415031	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8415032	8415087	1	+	2	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8415032	8415087	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8415088	8415338	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8415339	8415391	1	+	0	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8415339	8415391	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8415392	8415507	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8415508	8415626	1	+	1	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8415508	8415626	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8415627	8415715	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8415716	8415825	1	+	2	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8415716	8415825	.	+	.	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	stop_codon	8415826	8415828	.	+	0	transcript_id "Ledus.S1G086900.t1"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	transcript	8414240	8415825	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	start_codon	8414240	8414242	.	+	0	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8414240	8414308	0.93	+	0	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8414240	8414308	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8414309	8414396	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8414397	8414430	0.46	+	0	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8414397	8414430	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8414431	8414491	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8414492	8414535	0.32	+	2	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8414492	8414535	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8414536	8414609	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8414610	8414640	0.68	+	0	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8414610	8414640	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8414641	8414895	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8414896	8414943	1	+	2	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8414896	8414943	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8414944	8415031	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8415032	8415087	1	+	2	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8415032	8415087	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8415088	8415338	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8415339	8415391	1	+	0	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8415339	8415391	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8415392	8415507	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8415508	8415626	1	+	1	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8415508	8415626	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	intron	8415627	8415715	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	CDS	8415716	8415825	1	+	2	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	exon	8415716	8415825	.	+	.	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
Ledus.S1	AUGUSTUS	stop_codon	8415826	8415828	.	+	0	transcript_id "Ledus.S1G086900.t2"; gene_id "Ledus.S1G086900"
# This transcript jg7471.t2 is derived from g12142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7472.t1 is derived from g12143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3030050	3030605	.	-	.	Ledus.S5G025000
Ledus.S5	AUGUSTUS	transcript	3030050	3030605	.	-	.	transcript_id "Ledus.S5G025000.t1"; gene_id "Ledus.S5G025000"
Ledus.S5	AUGUSTUS	stop_codon	3030047	3030049	.	-	0	transcript_id "Ledus.S5G025000.t1"; gene_id "Ledus.S5G025000"
Ledus.S5	AUGUSTUS	CDS	3030050	3030051	0.63	-	2	transcript_id "Ledus.S5G025000.t1"; gene_id "Ledus.S5G025000"
Ledus.S5	AUGUSTUS	exon	3030050	3030051	.	-	.	transcript_id "Ledus.S5G025000.t1"; gene_id "Ledus.S5G025000"
Ledus.S5	AUGUSTUS	intron	3030052	3030169	.	-	.	transcript_id "Ledus.S5G025000.t1"; gene_id "Ledus.S5G025000"
Ledus.S5	AUGUSTUS	CDS	3030170	3030312	0.62	-	1	transcript_id "Ledus.S5G025000.t1"; gene_id "Ledus.S5G025000"
Ledus.S5	AUGUSTUS	exon	3030170	3030312	.	-	.	transcript_id "Ledus.S5G025000.t1"; gene_id "Ledus.S5G025000"
Ledus.S5	AUGUSTUS	intron	3030313	3030393	.	-	.	transcript_id "Ledus.S5G025000.t1"; gene_id "Ledus.S5G025000"
Ledus.S5	AUGUSTUS	CDS	3030394	3030605	0.55	-	0	transcript_id "Ledus.S5G025000.t1"; gene_id "Ledus.S5G025000"
Ledus.S5	AUGUSTUS	exon	3030394	3030605	.	-	.	transcript_id "Ledus.S5G025000.t1"; gene_id "Ledus.S5G025000"
Ledus.S5	AUGUSTUS	start_codon	3030603	3030605	.	-	0	transcript_id "Ledus.S5G025000.t1"; gene_id "Ledus.S5G025000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9632.t1 is derived from g10662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8473234	8474635	.	-	.	Ledus.S3G110900
Ledus.S3	AUGUSTUS	transcript	8473234	8474635	.	-	.	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	stop_codon	8473231	8473233	.	-	0	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	CDS	8473234	8473463	1	-	2	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	exon	8473234	8473463	.	-	.	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	intron	8473464	8473541	.	-	.	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	CDS	8473542	8473830	1	-	0	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	exon	8473542	8473830	.	-	.	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	intron	8473831	8473908	.	-	.	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	CDS	8473909	8474201	1	-	2	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	exon	8473909	8474201	.	-	.	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	intron	8474202	8474279	.	-	.	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	CDS	8474280	8474480	1	-	2	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	exon	8474280	8474480	.	-	.	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	intron	8474481	8474571	.	-	.	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	CDS	8474572	8474635	0.97	-	0	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	exon	8474572	8474635	.	-	.	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
Ledus.S3	AUGUSTUS	start_codon	8474633	8474635	.	-	0	transcript_id "Ledus.S3G110900.t1"; gene_id "Ledus.S3G110900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9404.t1 is derived from g10434.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6582535	6583887	.	-	.	Ledus.S3G088100
Ledus.S3	AUGUSTUS	transcript	6582535	6583887	.	-	.	transcript_id "Ledus.S3G088100.t1"; gene_id "Ledus.S3G088100"
Ledus.S3	AUGUSTUS	stop_codon	6582532	6582534	.	-	0	transcript_id "Ledus.S3G088100.t1"; gene_id "Ledus.S3G088100"
Ledus.S3	AUGUSTUS	CDS	6582535	6583887	1	-	0	transcript_id "Ledus.S3G088100.t1"; gene_id "Ledus.S3G088100"
Ledus.S3	AUGUSTUS	exon	6582535	6583887	.	-	.	transcript_id "Ledus.S3G088100.t1"; gene_id "Ledus.S3G088100"
Ledus.S3	AUGUSTUS	start_codon	6583885	6583887	.	-	0	transcript_id "Ledus.S3G088100.t1"; gene_id "Ledus.S3G088100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10216.t1 is derived from g11246.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13630920	13631936	.	-	.	Ledus.S3G169300
Ledus.S3	AUGUSTUS	transcript	13630920	13631936	.	-	.	transcript_id "Ledus.S3G169300.t1"; gene_id "Ledus.S3G169300"
Ledus.S3	AUGUSTUS	stop_codon	13630917	13630919	.	-	0	transcript_id "Ledus.S3G169300.t1"; gene_id "Ledus.S3G169300"
Ledus.S3	AUGUSTUS	CDS	13630920	13631936	1	-	0	transcript_id "Ledus.S3G169300.t1"; gene_id "Ledus.S3G169300"
Ledus.S3	AUGUSTUS	exon	13630920	13631936	.	-	.	transcript_id "Ledus.S3G169300.t1"; gene_id "Ledus.S3G169300"
Ledus.S3	AUGUSTUS	start_codon	13631934	13631936	.	-	0	transcript_id "Ledus.S3G169300.t1"; gene_id "Ledus.S3G169300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5899.t1 is derived from g3342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27688169	27689695	.	-	.	Ledus.S1G332000
Ledus.S1	AUGUSTUS	transcript	27688169	27689695	.	-	.	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	stop_codon	27688166	27688168	.	-	0	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	CDS	27688169	27688434	0.98	-	2	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	exon	27688169	27688434	.	-	.	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	intron	27688435	27688528	.	-	.	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	CDS	27688529	27688732	1	-	2	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	exon	27688529	27688732	.	-	.	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	intron	27688733	27688819	.	-	.	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	CDS	27688820	27689066	0.97	-	0	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	exon	27688820	27689066	.	-	.	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	intron	27689067	27689257	.	-	.	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	CDS	27689258	27689404	0.99	-	0	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	exon	27689258	27689404	.	-	.	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	intron	27689405	27689503	.	-	.	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	CDS	27689504	27689695	0.99	-	0	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	exon	27689504	27689695	.	-	.	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
Ledus.S1	AUGUSTUS	start_codon	27689693	27689695	.	-	0	transcript_id "Ledus.S1G332000.t1"; gene_id "Ledus.S1G332000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12520.t1 is derived from g6141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12711005	12713911	.	+	.	Ledus.S4G167600
Ledus.S4	AUGUSTUS	transcript	12711005	12713911	.	+	.	transcript_id "Ledus.S4G167600.t1"; gene_id "Ledus.S4G167600"
Ledus.S4	AUGUSTUS	start_codon	12711005	12711007	.	+	0	transcript_id "Ledus.S4G167600.t1"; gene_id "Ledus.S4G167600"
Ledus.S4	AUGUSTUS	CDS	12711005	12713911	0.93	+	0	transcript_id "Ledus.S4G167600.t1"; gene_id "Ledus.S4G167600"
Ledus.S4	AUGUSTUS	exon	12711005	12713911	.	+	.	transcript_id "Ledus.S4G167600.t1"; gene_id "Ledus.S4G167600"
Ledus.S4	AUGUSTUS	stop_codon	12713912	12713914	.	+	0	transcript_id "Ledus.S4G167600.t1"; gene_id "Ledus.S4G167600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg982.t1 is derived from g7843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6466516	6468159	.	-	.	Ledus.S2G086400
Ledus.S2	AUGUSTUS	transcript	6466516	6468159	.	-	.	transcript_id "Ledus.S2G086400.t1"; gene_id "Ledus.S2G086400"
Ledus.S2	AUGUSTUS	stop_codon	6466513	6466515	.	-	0	transcript_id "Ledus.S2G086400.t1"; gene_id "Ledus.S2G086400"
Ledus.S2	AUGUSTUS	CDS	6466516	6468159	0.59	-	0	transcript_id "Ledus.S2G086400.t1"; gene_id "Ledus.S2G086400"
Ledus.S2	AUGUSTUS	exon	6466516	6468159	.	-	.	transcript_id "Ledus.S2G086400.t1"; gene_id "Ledus.S2G086400"
Ledus.S2	AUGUSTUS	start_codon	6468157	6468159	.	-	0	transcript_id "Ledus.S2G086400.t1"; gene_id "Ledus.S2G086400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3178.t1 is derived from g613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6591243	6598798	.	+	.	Ledus.S1G059900
Ledus.S1	AUGUSTUS	transcript	6591243	6598798	.	+	.	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	start_codon	6591243	6591245	.	+	0	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	CDS	6591243	6595118	0.98	+	0	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	exon	6591243	6595118	.	+	.	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	intron	6595119	6595208	.	+	.	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	CDS	6595209	6595492	1	+	0	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	exon	6595209	6595492	.	+	.	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	intron	6595493	6595598	.	+	.	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	CDS	6595599	6596189	0.99	+	1	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	exon	6595599	6596189	.	+	.	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	intron	6596190	6596289	.	+	.	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	CDS	6596290	6598798	0.77	+	1	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	exon	6596290	6598798	.	+	.	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
Ledus.S1	AUGUSTUS	stop_codon	6598799	6598801	.	+	0	transcript_id "Ledus.S1G059900.t1"; gene_id "Ledus.S1G059900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11883.t1 is derived from g5502.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7525451	7526210	.	+	.	Ledus.S4G103900
Ledus.S4	AUGUSTUS	transcript	7525451	7526136	.	+	.	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	start_codon	7525451	7525453	.	+	0	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	CDS	7525451	7525555	0.82	+	0	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	exon	7525451	7525555	.	+	.	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	intron	7525556	7525658	.	+	.	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	CDS	7525659	7525724	0.9	+	0	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	exon	7525659	7525724	.	+	.	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	intron	7525725	7525858	.	+	.	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	CDS	7525859	7525987	1	+	0	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	exon	7525859	7525987	.	+	.	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	intron	7525988	7526112	.	+	.	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	CDS	7526113	7526136	1	+	0	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	exon	7526113	7526136	.	+	.	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	stop_codon	7526137	7526139	.	+	0	transcript_id "Ledus.S4G103900.t1"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	transcript	7525451	7526210	.	+	.	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	start_codon	7525451	7525453	.	+	0	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	CDS	7525451	7525555	0.81	+	0	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	exon	7525451	7525555	.	+	.	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	intron	7525556	7525658	.	+	.	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	CDS	7525659	7525724	0.9	+	0	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	exon	7525659	7525724	.	+	.	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	intron	7525725	7525858	.	+	.	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	CDS	7525859	7525987	0.99	+	0	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	exon	7525859	7525987	.	+	.	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	intron	7525988	7526150	.	+	.	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	CDS	7526151	7526210	0.9	+	0	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	exon	7526151	7526210	.	+	.	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
Ledus.S4	AUGUSTUS	stop_codon	7526211	7526213	.	+	0	transcript_id "Ledus.S4G103900.t2"; gene_id "Ledus.S4G103900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1959.t1 is derived from g8822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13826015	13827845	.	-	.	Ledus.S2G184100
Ledus.S2	AUGUSTUS	transcript	13826015	13827845	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	stop_codon	13826012	13826014	.	-	0	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	CDS	13826015	13826130	1	-	2	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	exon	13826015	13826130	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	intron	13826131	13826220	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	CDS	13826221	13826305	1	-	0	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	exon	13826221	13826305	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	intron	13826306	13826380	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	CDS	13826381	13826584	1	-	0	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	exon	13826381	13826584	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	intron	13826585	13826673	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	CDS	13826674	13826785	1	-	1	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	exon	13826674	13826785	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	intron	13826786	13826874	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	CDS	13826875	13826945	1	-	0	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	exon	13826875	13826945	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	intron	13826946	13827024	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	CDS	13827025	13827076	1	-	1	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	exon	13827025	13827076	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	intron	13827077	13827153	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	CDS	13827154	13827260	1	-	0	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	exon	13827154	13827260	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	intron	13827261	13827347	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	CDS	13827348	13827845	1	-	0	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	exon	13827348	13827845	.	-	.	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
Ledus.S2	AUGUSTUS	start_codon	13827843	13827845	.	-	0	transcript_id "Ledus.S2G184100.t1"; gene_id "Ledus.S2G184100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg738.t1 is derived from g7599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4683467	4683886	.	+	.	Ledus.S2G062000
Ledus.S2	AUGUSTUS	transcript	4683467	4683886	.	+	.	transcript_id "Ledus.S2G062000.t1"; gene_id "Ledus.S2G062000"
Ledus.S2	AUGUSTUS	start_codon	4683467	4683469	.	+	0	transcript_id "Ledus.S2G062000.t1"; gene_id "Ledus.S2G062000"
Ledus.S2	AUGUSTUS	CDS	4683467	4683886	0.67	+	0	transcript_id "Ledus.S2G062000.t1"; gene_id "Ledus.S2G062000"
Ledus.S2	AUGUSTUS	exon	4683467	4683886	.	+	.	transcript_id "Ledus.S2G062000.t1"; gene_id "Ledus.S2G062000"
Ledus.S2	AUGUSTUS	stop_codon	4683887	4683889	.	+	0	transcript_id "Ledus.S2G062000.t1"; gene_id "Ledus.S2G062000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1900.t1 is derived from g8763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13269980	13272181	.	-	.	Ledus.S2G178200
Ledus.S2	AUGUSTUS	transcript	13269980	13272144	.	-	.	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	stop_codon	13269977	13269979	.	-	0	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	CDS	13269980	13270055	1	-	1	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	exon	13269980	13270055	.	-	.	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	intron	13270056	13270233	.	-	.	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	CDS	13270234	13270732	1	-	2	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	exon	13270234	13270732	.	-	.	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	intron	13270733	13271171	.	-	.	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	CDS	13271172	13271371	0.82	-	1	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	exon	13271172	13271371	.	-	.	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	intron	13271372	13271620	.	-	.	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	CDS	13271621	13271696	0.74	-	2	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	exon	13271621	13271696	.	-	.	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	intron	13271697	13271781	.	-	.	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	CDS	13271782	13271839	0.75	-	0	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	exon	13271782	13271839	.	-	.	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	intron	13271840	13272135	.	-	.	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	CDS	13272136	13272144	0.72	-	0	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	exon	13272136	13272144	.	-	.	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	start_codon	13272142	13272144	.	-	0	transcript_id "Ledus.S2G178200.t1"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	transcript	13269980	13272181	.	-	.	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	stop_codon	13269977	13269979	.	-	0	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	CDS	13269980	13270055	0.99	-	1	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	exon	13269980	13270055	.	-	.	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	intron	13270056	13270233	.	-	.	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	CDS	13270234	13270732	1	-	2	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	exon	13270234	13270732	.	-	.	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	intron	13270733	13271171	.	-	.	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	CDS	13271172	13271371	0.75	-	1	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	exon	13271172	13271371	.	-	.	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	intron	13271372	13271620	.	-	.	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	CDS	13271621	13271696	0.62	-	2	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	exon	13271621	13271696	.	-	.	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	intron	13271697	13271781	.	-	.	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	CDS	13271782	13271793	0.54	-	2	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	exon	13271782	13271793	.	-	.	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	intron	13271794	13272135	.	-	.	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	CDS	13272136	13272181	0.53	-	0	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	exon	13272136	13272181	.	-	.	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
Ledus.S2	AUGUSTUS	start_codon	13272179	13272181	.	-	0	transcript_id "Ledus.S2G178200.t2"; gene_id "Ledus.S2G178200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3304.t1 is derived from g739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7386248	7386745	.	+	.	Ledus.S1G072500
Ledus.S1	AUGUSTUS	transcript	7386248	7386745	.	+	.	transcript_id "Ledus.S1G072500.t1"; gene_id "Ledus.S1G072500"
Ledus.S1	AUGUSTUS	start_codon	7386248	7386250	.	+	0	transcript_id "Ledus.S1G072500.t1"; gene_id "Ledus.S1G072500"
Ledus.S1	AUGUSTUS	CDS	7386248	7386745	0.97	+	0	transcript_id "Ledus.S1G072500.t1"; gene_id "Ledus.S1G072500"
Ledus.S1	AUGUSTUS	exon	7386248	7386745	.	+	.	transcript_id "Ledus.S1G072500.t1"; gene_id "Ledus.S1G072500"
Ledus.S1	AUGUSTUS	stop_codon	7386746	7386748	.	+	0	transcript_id "Ledus.S1G072500.t1"; gene_id "Ledus.S1G072500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9472.t1 is derived from g10502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7187439	7188361	.	+	.	Ledus.S3G094900
Ledus.S3	AUGUSTUS	transcript	7187439	7188361	.	+	.	transcript_id "Ledus.S3G094900.t1"; gene_id "Ledus.S3G094900"
Ledus.S3	AUGUSTUS	start_codon	7187439	7187441	.	+	0	transcript_id "Ledus.S3G094900.t1"; gene_id "Ledus.S3G094900"
Ledus.S3	AUGUSTUS	CDS	7187439	7187801	0.39	+	0	transcript_id "Ledus.S3G094900.t1"; gene_id "Ledus.S3G094900"
Ledus.S3	AUGUSTUS	exon	7187439	7187801	.	+	.	transcript_id "Ledus.S3G094900.t1"; gene_id "Ledus.S3G094900"
Ledus.S3	AUGUSTUS	intron	7187802	7187881	.	+	.	transcript_id "Ledus.S3G094900.t1"; gene_id "Ledus.S3G094900"
Ledus.S3	AUGUSTUS	CDS	7187882	7188361	1	+	0	transcript_id "Ledus.S3G094900.t1"; gene_id "Ledus.S3G094900"
Ledus.S3	AUGUSTUS	exon	7187882	7188361	.	+	.	transcript_id "Ledus.S3G094900.t1"; gene_id "Ledus.S3G094900"
Ledus.S3	AUGUSTUS	stop_codon	7188362	7188364	.	+	0	transcript_id "Ledus.S3G094900.t1"; gene_id "Ledus.S3G094900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7962.t1 is derived from g12633.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8252076	8254505	.	-	.	Ledus.S5G074000
Ledus.S5	AUGUSTUS	transcript	8252076	8254505	.	-	.	transcript_id "Ledus.S5G074000.t1"; gene_id "Ledus.S5G074000"
Ledus.S5	AUGUSTUS	stop_codon	8252073	8252075	.	-	0	transcript_id "Ledus.S5G074000.t1"; gene_id "Ledus.S5G074000"
Ledus.S5	AUGUSTUS	CDS	8252076	8253266	0.94	-	0	transcript_id "Ledus.S5G074000.t1"; gene_id "Ledus.S5G074000"
Ledus.S5	AUGUSTUS	exon	8252076	8253266	.	-	.	transcript_id "Ledus.S5G074000.t1"; gene_id "Ledus.S5G074000"
Ledus.S5	AUGUSTUS	intron	8253267	8253352	.	-	.	transcript_id "Ledus.S5G074000.t1"; gene_id "Ledus.S5G074000"
Ledus.S5	AUGUSTUS	CDS	8253353	8253972	1	-	2	transcript_id "Ledus.S5G074000.t1"; gene_id "Ledus.S5G074000"
Ledus.S5	AUGUSTUS	exon	8253353	8253972	.	-	.	transcript_id "Ledus.S5G074000.t1"; gene_id "Ledus.S5G074000"
Ledus.S5	AUGUSTUS	intron	8253973	8254066	.	-	.	transcript_id "Ledus.S5G074000.t1"; gene_id "Ledus.S5G074000"
Ledus.S5	AUGUSTUS	CDS	8254067	8254505	0.58	-	0	transcript_id "Ledus.S5G074000.t1"; gene_id "Ledus.S5G074000"
Ledus.S5	AUGUSTUS	exon	8254067	8254505	.	-	.	transcript_id "Ledus.S5G074000.t1"; gene_id "Ledus.S5G074000"
Ledus.S5	AUGUSTUS	start_codon	8254503	8254505	.	-	0	transcript_id "Ledus.S5G074000.t1"; gene_id "Ledus.S5G074000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1711.t1 is derived from g8572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12072572	12075070	.	-	.	Ledus.S2G159300
Ledus.S2	AUGUSTUS	transcript	12072572	12075070	.	-	.	transcript_id "Ledus.S2G159300.t1"; gene_id "Ledus.S2G159300"
Ledus.S2	AUGUSTUS	stop_codon	12072569	12072571	.	-	0	transcript_id "Ledus.S2G159300.t1"; gene_id "Ledus.S2G159300"
Ledus.S2	AUGUSTUS	CDS	12072572	12075070	1	-	0	transcript_id "Ledus.S2G159300.t1"; gene_id "Ledus.S2G159300"
Ledus.S2	AUGUSTUS	exon	12072572	12075070	.	-	.	transcript_id "Ledus.S2G159300.t1"; gene_id "Ledus.S2G159300"
Ledus.S2	AUGUSTUS	start_codon	12075068	12075070	.	-	0	transcript_id "Ledus.S2G159300.t1"; gene_id "Ledus.S2G159300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7106.t1 is derived from g6637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1565837	1570136	.	-	.	Ledus.C7G016700
Ledus.C7	AUGUSTUS	transcript	1565837	1570136	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	stop_codon	1565834	1565836	.	-	0	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1565837	1566072	0.99	-	2	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1565837	1566072	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1566073	1566162	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1566163	1566302	1	-	1	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1566163	1566302	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1566303	1566391	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1566392	1566582	1	-	0	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1566392	1566582	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1566583	1566665	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1566666	1566871	0.87	-	2	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1566666	1566871	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1566872	1566974	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1566975	1567270	0.73	-	1	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1566975	1567270	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1567271	1567363	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1567364	1567456	0.66	-	1	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1567364	1567456	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1567457	1567522	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1567523	1567626	0.66	-	0	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1567523	1567626	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1567627	1567724	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1567725	1567901	1	-	0	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1567725	1567901	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1567902	1568083	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1568084	1568194	1	-	0	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1568084	1568194	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1568195	1568328	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1568329	1568634	1	-	0	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1568329	1568634	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1568635	1568752	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1568753	1568873	1	-	1	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1568753	1568873	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1568874	1568964	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1568965	1569028	0.99	-	2	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1568965	1569028	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1569029	1569178	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1569179	1569220	0.99	-	2	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1569179	1569220	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1569221	1569615	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1569616	1569738	1	-	2	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1569616	1569738	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1569739	1569931	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1569932	1569979	0.85	-	2	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1569932	1569979	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	intron	1569980	1570066	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	CDS	1570067	1570136	0.38	-	0	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	exon	1570067	1570136	.	-	.	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
Ledus.C7	AUGUSTUS	start_codon	1570134	1570136	.	-	0	transcript_id "Ledus.C7G016700.t1"; gene_id "Ledus.C7G016700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4920.t1 is derived from g2358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20632378	20640100	.	-	.	Ledus.S1G234100
Ledus.S1	AUGUSTUS	transcript	20632378	20640100	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	stop_codon	20632375	20632377	.	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20632378	20632500	0.96	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20632378	20632500	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20632501	20632600	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20632601	20632705	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20632601	20632705	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20632706	20632872	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20632873	20633013	0.94	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20632873	20633013	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20633014	20633127	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20633128	20633265	0.94	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20633128	20633265	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20633266	20633434	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20633435	20633542	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20633435	20633542	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20633543	20633693	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20633694	20633804	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20633694	20633804	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20633805	20633893	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20633894	20633960	1	-	1	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20633894	20633960	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20633961	20634076	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20634077	20634259	0.97	-	1	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20634077	20634259	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20634260	20634356	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20634357	20634437	1	-	1	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20634357	20634437	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20634438	20634640	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20634641	20634726	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20634641	20634726	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20634727	20634810	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20634811	20634900	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20634811	20634900	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20634901	20635054	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20635055	20635135	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20635055	20635135	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20635136	20635241	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20635242	20635340	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20635242	20635340	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20635341	20635500	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20635501	20635566	0.99	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20635501	20635566	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20635567	20635695	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20635696	20635804	0.96	-	1	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20635696	20635804	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20635805	20635905	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20635906	20636003	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20635906	20636003	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20636004	20636118	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20636119	20636229	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20636119	20636229	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20636230	20636309	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20636310	20636369	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20636310	20636369	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20636370	20636539	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20636540	20636734	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20636540	20636734	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20636735	20636857	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20636858	20636953	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20636858	20636953	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20636954	20637033	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20637034	20637141	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20637034	20637141	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20637142	20637243	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20637244	20637288	0.87	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20637244	20637288	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20637289	20637401	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20637402	20637464	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20637402	20637464	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20637465	20637553	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20637554	20637631	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20637554	20637631	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20637632	20637723	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20637724	20637792	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20637724	20637792	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20637793	20638009	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20638010	20638148	0.69	-	1	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20638010	20638148	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20638149	20638280	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20638281	20638363	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20638281	20638363	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20638364	20638437	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20638438	20638545	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20638438	20638545	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20638546	20638633	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20638634	20638705	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20638634	20638705	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20638706	20638788	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20638789	20638881	1	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20638789	20638881	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20638882	20639023	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20639024	20639140	0.98	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20639024	20639140	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20639141	20639225	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20639226	20639424	0.73	-	1	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20639226	20639424	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20639425	20639767	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20639768	20639826	0.53	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20639768	20639826	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	intron	20639827	20640004	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	CDS	20640005	20640100	0.8	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	exon	20640005	20640100	.	-	.	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
Ledus.S1	AUGUSTUS	start_codon	20640098	20640100	.	-	0	transcript_id "Ledus.S1G234100.t1"; gene_id "Ledus.S1G234100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7723.t1 is derived from g12394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5580139	5583208	.	+	.	Ledus.S5G050100
Ledus.S5	AUGUSTUS	transcript	5580139	5583208	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	start_codon	5580139	5580141	.	+	0	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	CDS	5580139	5580788	0.91	+	0	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	exon	5580139	5580788	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	intron	5580789	5580873	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	CDS	5580874	5581102	1	+	1	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	exon	5580874	5581102	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	intron	5581103	5581247	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	CDS	5581248	5581400	0.82	+	0	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	exon	5581248	5581400	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	intron	5581401	5581523	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	CDS	5581524	5581682	0.8	+	0	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	exon	5581524	5581682	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	intron	5581683	5581786	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	CDS	5581787	5581946	1	+	0	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	exon	5581787	5581946	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	intron	5581947	5582042	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	CDS	5582043	5582167	0.64	+	2	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	exon	5582043	5582167	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	intron	5582168	5582274	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	CDS	5582275	5582391	1	+	0	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	exon	5582275	5582391	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	intron	5582392	5582495	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	CDS	5582496	5582898	0.97	+	0	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	exon	5582496	5582898	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	intron	5582899	5583158	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	CDS	5583159	5583208	1	+	2	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	exon	5583159	5583208	.	+	.	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
Ledus.S5	AUGUSTUS	stop_codon	5583209	5583211	.	+	0	transcript_id "Ledus.S5G050100.t1"; gene_id "Ledus.S5G050100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11878.t1 is derived from g5497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7485720	7487633	.	-	.	Ledus.S4G103400
Ledus.S4	AUGUSTUS	transcript	7485720	7487633	.	-	.	transcript_id "Ledus.S4G103400.t1"; gene_id "Ledus.S4G103400"
Ledus.S4	AUGUSTUS	stop_codon	7485717	7485719	.	-	0	transcript_id "Ledus.S4G103400.t1"; gene_id "Ledus.S4G103400"
Ledus.S4	AUGUSTUS	CDS	7485720	7486224	0.9	-	1	transcript_id "Ledus.S4G103400.t1"; gene_id "Ledus.S4G103400"
Ledus.S4	AUGUSTUS	exon	7485720	7486224	.	-	.	transcript_id "Ledus.S4G103400.t1"; gene_id "Ledus.S4G103400"
Ledus.S4	AUGUSTUS	intron	7486225	7486329	.	-	.	transcript_id "Ledus.S4G103400.t1"; gene_id "Ledus.S4G103400"
Ledus.S4	AUGUSTUS	CDS	7486330	7486607	1	-	0	transcript_id "Ledus.S4G103400.t1"; gene_id "Ledus.S4G103400"
Ledus.S4	AUGUSTUS	exon	7486330	7486607	.	-	.	transcript_id "Ledus.S4G103400.t1"; gene_id "Ledus.S4G103400"
Ledus.S4	AUGUSTUS	intron	7486608	7486739	.	-	.	transcript_id "Ledus.S4G103400.t1"; gene_id "Ledus.S4G103400"
Ledus.S4	AUGUSTUS	CDS	7486740	7487633	0.93	-	0	transcript_id "Ledus.S4G103400.t1"; gene_id "Ledus.S4G103400"
Ledus.S4	AUGUSTUS	exon	7486740	7487633	.	-	.	transcript_id "Ledus.S4G103400.t1"; gene_id "Ledus.S4G103400"
Ledus.S4	AUGUSTUS	start_codon	7487631	7487633	.	-	0	transcript_id "Ledus.S4G103400.t1"; gene_id "Ledus.S4G103400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg644.t1 is derived from g7505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3858589	3860123	.	+	.	Ledus.S2G052600
Ledus.S2	AUGUSTUS	transcript	3858589	3860123	.	+	.	transcript_id "Ledus.S2G052600.t1"; gene_id "Ledus.S2G052600"
Ledus.S2	AUGUSTUS	start_codon	3858589	3858591	.	+	0	transcript_id "Ledus.S2G052600.t1"; gene_id "Ledus.S2G052600"
Ledus.S2	AUGUSTUS	CDS	3858589	3859545	0.55	+	0	transcript_id "Ledus.S2G052600.t1"; gene_id "Ledus.S2G052600"
Ledus.S2	AUGUSTUS	exon	3858589	3859545	.	+	.	transcript_id "Ledus.S2G052600.t1"; gene_id "Ledus.S2G052600"
Ledus.S2	AUGUSTUS	intron	3859546	3859695	.	+	.	transcript_id "Ledus.S2G052600.t1"; gene_id "Ledus.S2G052600"
Ledus.S2	AUGUSTUS	CDS	3859696	3859767	1	+	0	transcript_id "Ledus.S2G052600.t1"; gene_id "Ledus.S2G052600"
Ledus.S2	AUGUSTUS	exon	3859696	3859767	.	+	.	transcript_id "Ledus.S2G052600.t1"; gene_id "Ledus.S2G052600"
Ledus.S2	AUGUSTUS	intron	3859768	3859913	.	+	.	transcript_id "Ledus.S2G052600.t1"; gene_id "Ledus.S2G052600"
Ledus.S2	AUGUSTUS	CDS	3859914	3860123	0.96	+	0	transcript_id "Ledus.S2G052600.t1"; gene_id "Ledus.S2G052600"
Ledus.S2	AUGUSTUS	exon	3859914	3860123	.	+	.	transcript_id "Ledus.S2G052600.t1"; gene_id "Ledus.S2G052600"
Ledus.S2	AUGUSTUS	stop_codon	3860124	3860126	.	+	0	transcript_id "Ledus.S2G052600.t1"; gene_id "Ledus.S2G052600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3104.t1 is derived from g539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5866254	5866656	.	-	.	Ledus.S1G052500
Ledus.S1	AUGUSTUS	transcript	5866254	5866656	.	-	.	transcript_id "Ledus.S1G052500.t1"; gene_id "Ledus.S1G052500"
Ledus.S1	AUGUSTUS	stop_codon	5866251	5866253	.	-	0	transcript_id "Ledus.S1G052500.t1"; gene_id "Ledus.S1G052500"
Ledus.S1	AUGUSTUS	CDS	5866254	5866336	0.95	-	2	transcript_id "Ledus.S1G052500.t1"; gene_id "Ledus.S1G052500"
Ledus.S1	AUGUSTUS	exon	5866254	5866336	.	-	.	transcript_id "Ledus.S1G052500.t1"; gene_id "Ledus.S1G052500"
Ledus.S1	AUGUSTUS	intron	5866337	5866418	.	-	.	transcript_id "Ledus.S1G052500.t1"; gene_id "Ledus.S1G052500"
Ledus.S1	AUGUSTUS	CDS	5866419	5866656	0.97	-	0	transcript_id "Ledus.S1G052500.t1"; gene_id "Ledus.S1G052500"
Ledus.S1	AUGUSTUS	exon	5866419	5866656	.	-	.	transcript_id "Ledus.S1G052500.t1"; gene_id "Ledus.S1G052500"
Ledus.S1	AUGUSTUS	start_codon	5866654	5866656	.	-	0	transcript_id "Ledus.S1G052500.t1"; gene_id "Ledus.S1G052500"
# This transcript jg893.t2 is derived from g7754.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg894.t1 is derived from g7755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6002534	6003725	.	+	.	Ledus.S2G077600
Ledus.S2	AUGUSTUS	transcript	6002534	6003725	.	+	.	transcript_id "Ledus.S2G077600.t1"; gene_id "Ledus.S2G077600"
Ledus.S2	AUGUSTUS	start_codon	6002534	6002536	.	+	0	transcript_id "Ledus.S2G077600.t1"; gene_id "Ledus.S2G077600"
Ledus.S2	AUGUSTUS	CDS	6002534	6003514	0.48	+	0	transcript_id "Ledus.S2G077600.t1"; gene_id "Ledus.S2G077600"
Ledus.S2	AUGUSTUS	exon	6002534	6003514	.	+	.	transcript_id "Ledus.S2G077600.t1"; gene_id "Ledus.S2G077600"
Ledus.S2	AUGUSTUS	intron	6003515	6003615	.	+	.	transcript_id "Ledus.S2G077600.t1"; gene_id "Ledus.S2G077600"
Ledus.S2	AUGUSTUS	CDS	6003616	6003635	1	+	0	transcript_id "Ledus.S2G077600.t1"; gene_id "Ledus.S2G077600"
Ledus.S2	AUGUSTUS	exon	6003616	6003635	.	+	.	transcript_id "Ledus.S2G077600.t1"; gene_id "Ledus.S2G077600"
Ledus.S2	AUGUSTUS	intron	6003636	6003700	.	+	.	transcript_id "Ledus.S2G077600.t1"; gene_id "Ledus.S2G077600"
Ledus.S2	AUGUSTUS	CDS	6003701	6003725	1	+	1	transcript_id "Ledus.S2G077600.t1"; gene_id "Ledus.S2G077600"
Ledus.S2	AUGUSTUS	exon	6003701	6003725	.	+	.	transcript_id "Ledus.S2G077600.t1"; gene_id "Ledus.S2G077600"
Ledus.S2	AUGUSTUS	stop_codon	6003726	6003728	.	+	0	transcript_id "Ledus.S2G077600.t1"; gene_id "Ledus.S2G077600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11173.t1 is derived from g4791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2365297	2369223	.	+	.	Ledus.S4G032900
Ledus.S4	AUGUSTUS	transcript	2365297	2369223	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	start_codon	2365297	2365299	.	+	0	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	CDS	2365297	2365494	0.59	+	0	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	exon	2365297	2365494	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	intron	2365495	2365583	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	CDS	2365584	2365644	1	+	0	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	exon	2365584	2365644	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	intron	2365645	2365778	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	CDS	2365779	2367736	1	+	2	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	exon	2365779	2367736	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	intron	2367737	2367823	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	CDS	2367824	2367979	1	+	0	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	exon	2367824	2367979	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	intron	2367980	2368157	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	CDS	2368158	2368329	1	+	0	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	exon	2368158	2368329	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	intron	2368330	2368451	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	CDS	2368452	2368747	1	+	2	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	exon	2368452	2368747	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	intron	2368748	2368866	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	CDS	2368867	2369223	0.95	+	0	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	exon	2368867	2369223	.	+	.	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
Ledus.S4	AUGUSTUS	stop_codon	2369224	2369226	.	+	0	transcript_id "Ledus.S4G032900.t1"; gene_id "Ledus.S4G032900"
# This transcript jg6131.t2 is derived from g3574.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6132.t1 is derived from g3575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29144389	29147534	.	-	.	Ledus.S1G355300
Ledus.S1	AUGUSTUS	transcript	29144389	29147534	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	stop_codon	29144386	29144388	.	-	0	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29144389	29144475	1	-	0	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29144389	29144475	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29144476	29144604	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29144605	29144802	1	-	0	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29144605	29144802	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29144803	29144874	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29144875	29144961	1	-	0	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29144875	29144961	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29144962	29145052	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29145053	29145138	0.98	-	2	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29145053	29145138	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29145139	29145247	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29145248	29145349	1	-	2	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29145248	29145349	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29145350	29145550	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29145551	29145654	1	-	1	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29145551	29145654	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29145655	29145788	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29145789	29145865	1	-	0	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29145789	29145865	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29145866	29145950	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29145951	29146031	1	-	0	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29145951	29146031	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29146032	29146125	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29146126	29146242	1	-	0	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29146126	29146242	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29146243	29146377	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29146378	29146449	1	-	0	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29146378	29146449	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29146450	29146615	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29146616	29146790	1	-	1	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29146616	29146790	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29146791	29146880	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29146881	29147035	1	-	0	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29146881	29147035	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29147036	29147200	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29147201	29147293	1	-	0	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29147201	29147293	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	intron	29147294	29147393	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	CDS	29147394	29147534	0.22	-	0	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	exon	29147394	29147534	.	-	.	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
Ledus.S1	AUGUSTUS	start_codon	29147532	29147534	.	-	0	transcript_id "Ledus.S1G355300.t1"; gene_id "Ledus.S1G355300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7639.t1 is derived from g12310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4767654	4768906	.	-	.	Ledus.S5G041700
Ledus.S5	AUGUSTUS	transcript	4767654	4768906	.	-	.	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	stop_codon	4767651	4767653	.	-	0	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	CDS	4767654	4767849	0.98	-	1	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	exon	4767654	4767849	.	-	.	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	intron	4767850	4767978	.	-	.	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	CDS	4767979	4768082	0.98	-	0	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	exon	4767979	4768082	.	-	.	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	intron	4768083	4768425	.	-	.	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	CDS	4768426	4768539	0.43	-	0	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	exon	4768426	4768539	.	-	.	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	intron	4768540	4768663	.	-	.	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	CDS	4768664	4768906	0.3	-	0	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	exon	4768664	4768906	.	-	.	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
Ledus.S5	AUGUSTUS	start_codon	4768904	4768906	.	-	0	transcript_id "Ledus.S5G041700.t1"; gene_id "Ledus.S5G041700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg311.t1 is derived from g7172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1571001	1574927	.	-	.	Ledus.S2G019300
Ledus.S2	AUGUSTUS	transcript	1571001	1574173	.	-	.	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	stop_codon	1570998	1571000	.	-	0	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	CDS	1571001	1572440	0.86	-	0	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	exon	1571001	1572440	.	-	.	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	intron	1572441	1572565	.	-	.	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	CDS	1572566	1572703	1	-	0	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	exon	1572566	1572703	.	-	.	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	intron	1572704	1572960	.	-	.	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	CDS	1572961	1573619	0.99	-	2	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	exon	1572961	1573619	.	-	.	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	intron	1573620	1573909	.	-	.	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	CDS	1573910	1573984	0.69	-	2	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	exon	1573910	1573984	.	-	.	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	intron	1573985	1574163	.	-	.	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	CDS	1574164	1574173	0.42	-	0	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	exon	1574164	1574173	.	-	.	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	start_codon	1574171	1574173	.	-	0	transcript_id "Ledus.S2G019300.t1"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	transcript	1571001	1574927	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	stop_codon	1570998	1571000	.	-	0	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	CDS	1571001	1572440	0.86	-	0	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	exon	1571001	1572440	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	intron	1572441	1572565	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	CDS	1572566	1572703	1	-	0	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	exon	1572566	1572703	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	intron	1572704	1572960	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	CDS	1572961	1573619	0.9	-	2	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	exon	1572961	1573619	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	intron	1573620	1573909	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	CDS	1573910	1574075	0.66	-	0	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	exon	1573910	1574075	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	intron	1574076	1574163	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	CDS	1574164	1574320	1	-	1	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	exon	1574164	1574320	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	intron	1574321	1574419	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	CDS	1574420	1574477	0.98	-	2	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	exon	1574420	1574477	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	intron	1574478	1574653	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	CDS	1574654	1574927	0.22	-	0	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	exon	1574654	1574927	.	-	.	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
Ledus.S2	AUGUSTUS	start_codon	1574925	1574927	.	-	0	transcript_id "Ledus.S2G019300.t2"; gene_id "Ledus.S2G019300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1945.t1 is derived from g8808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13626761	13627327	.	+	.	Ledus.S2G182700
Ledus.S2	AUGUSTUS	transcript	13626761	13627327	.	+	.	transcript_id "Ledus.S2G182700.t1"; gene_id "Ledus.S2G182700"
Ledus.S2	AUGUSTUS	start_codon	13626761	13626763	.	+	0	transcript_id "Ledus.S2G182700.t1"; gene_id "Ledus.S2G182700"
Ledus.S2	AUGUSTUS	CDS	13626761	13626848	0.25	+	0	transcript_id "Ledus.S2G182700.t1"; gene_id "Ledus.S2G182700"
Ledus.S2	AUGUSTUS	exon	13626761	13626848	.	+	.	transcript_id "Ledus.S2G182700.t1"; gene_id "Ledus.S2G182700"
Ledus.S2	AUGUSTUS	intron	13626849	13626968	.	+	.	transcript_id "Ledus.S2G182700.t1"; gene_id "Ledus.S2G182700"
Ledus.S2	AUGUSTUS	CDS	13626969	13627327	0.62	+	2	transcript_id "Ledus.S2G182700.t1"; gene_id "Ledus.S2G182700"
Ledus.S2	AUGUSTUS	exon	13626969	13627327	.	+	.	transcript_id "Ledus.S2G182700.t1"; gene_id "Ledus.S2G182700"
Ledus.S2	AUGUSTUS	stop_codon	13627328	13627330	.	+	0	transcript_id "Ledus.S2G182700.t1"; gene_id "Ledus.S2G182700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6426.t1 is derived from g3869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31198565	31202519	.	-	.	Ledus.S1G384700
Ledus.S1	AUGUSTUS	transcript	31198565	31202519	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	stop_codon	31198562	31198564	.	-	0	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	CDS	31198565	31198770	0.97	-	2	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	exon	31198565	31198770	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	intron	31198771	31198852	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	CDS	31198853	31199105	1	-	0	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	exon	31198853	31199105	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	intron	31199106	31199192	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	CDS	31199193	31199427	0.94	-	1	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	exon	31199193	31199427	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	intron	31199428	31199540	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	CDS	31199541	31199719	1	-	0	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	exon	31199541	31199719	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	intron	31199720	31199801	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	CDS	31199802	31200014	1	-	0	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	exon	31199802	31200014	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	intron	31200015	31200142	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	CDS	31200143	31200346	1	-	0	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	exon	31200143	31200346	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	intron	31200347	31200432	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	CDS	31200433	31200522	1	-	0	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	exon	31200433	31200522	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	intron	31200523	31200603	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	CDS	31200604	31200813	0.77	-	0	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	exon	31200604	31200813	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	intron	31200814	31200889	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	CDS	31200890	31201087	1	-	0	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	exon	31200890	31201087	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	intron	31201088	31201214	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	CDS	31201215	31202519	0.97	-	0	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	exon	31201215	31202519	.	-	.	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
Ledus.S1	AUGUSTUS	start_codon	31202517	31202519	.	-	0	transcript_id "Ledus.S1G384700.t1"; gene_id "Ledus.S1G384700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11682.t1 is derived from g5301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5957698	5959233	.	+	.	Ledus.S4G083800
Ledus.S4	AUGUSTUS	transcript	5957698	5959233	.	+	.	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	start_codon	5957698	5957700	.	+	0	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	CDS	5957698	5957735	1	+	0	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	exon	5957698	5957735	.	+	.	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	intron	5957736	5958295	.	+	.	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	CDS	5958296	5958377	1	+	1	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	exon	5958296	5958377	.	+	.	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	intron	5958378	5958461	.	+	.	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	CDS	5958462	5958494	1	+	0	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	exon	5958462	5958494	.	+	.	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	intron	5958495	5958654	.	+	.	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	CDS	5958655	5958776	1	+	0	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	exon	5958655	5958776	.	+	.	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	intron	5958777	5958872	.	+	.	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	CDS	5958873	5959034	1	+	1	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	exon	5958873	5959034	.	+	.	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	intron	5959035	5959118	.	+	.	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	CDS	5959119	5959233	0.94	+	1	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	exon	5959119	5959233	.	+	.	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
Ledus.S4	AUGUSTUS	stop_codon	5959234	5959236	.	+	0	transcript_id "Ledus.S4G083800.t1"; gene_id "Ledus.S4G083800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6269.t1 is derived from g3712.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30050813	30052207	.	+	.	Ledus.S1G369000
Ledus.S1	AUGUSTUS	transcript	30050813	30052207	.	+	.	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	start_codon	30050813	30050815	.	+	0	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	CDS	30050813	30050895	0.6	+	0	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	exon	30050813	30050895	.	+	.	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	intron	30050896	30051063	.	+	.	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	CDS	30051064	30051183	1	+	1	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	exon	30051064	30051183	.	+	.	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	intron	30051184	30051614	.	+	.	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	CDS	30051615	30051729	1	+	1	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	exon	30051615	30051729	.	+	.	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	intron	30051730	30051832	.	+	.	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	CDS	30051833	30051923	1	+	0	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	exon	30051833	30051923	.	+	.	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	intron	30051924	30052016	.	+	.	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	CDS	30052017	30052207	1	+	2	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	exon	30052017	30052207	.	+	.	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
Ledus.S1	AUGUSTUS	stop_codon	30052208	30052210	.	+	0	transcript_id "Ledus.S1G369000.t1"; gene_id "Ledus.S1G369000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg717.t1 is derived from g7578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4433691	4436808	.	+	.	Ledus.S2G059900
Ledus.S2	AUGUSTUS	transcript	4433691	4436808	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	start_codon	4433691	4433693	.	+	0	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	CDS	4433691	4434413	1	+	0	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	exon	4433691	4434413	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	intron	4434414	4434643	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	CDS	4434644	4434676	1	+	0	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	exon	4434644	4434676	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	intron	4434677	4434775	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	CDS	4434776	4434878	1	+	0	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	exon	4434776	4434878	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	intron	4434879	4435044	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	CDS	4435045	4435529	0.92	+	2	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	exon	4435045	4435529	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	intron	4435530	4435629	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	CDS	4435630	4435896	1	+	0	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	exon	4435630	4435896	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	intron	4435897	4436089	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	CDS	4436090	4436439	1	+	0	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	exon	4436090	4436439	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	intron	4436440	4436536	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	CDS	4436537	4436618	0.65	+	1	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	exon	4436537	4436618	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	intron	4436619	4436778	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	CDS	4436779	4436808	0.55	+	0	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	exon	4436779	4436808	.	+	.	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
Ledus.S2	AUGUSTUS	stop_codon	4436809	4436811	.	+	0	transcript_id "Ledus.S2G059900.t1"; gene_id "Ledus.S2G059900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2344.t1 is derived from g9207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17369451	17374369	.	+	.	Ledus.S2G222600
Ledus.S2	AUGUSTUS	transcript	17369451	17374369	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	start_codon	17369451	17369453	.	+	0	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17369451	17370320	0.89	+	0	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17369451	17370320	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	intron	17370321	17370491	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17370492	17370620	1	+	0	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17370492	17370620	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	intron	17370621	17370812	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17370813	17370902	1	+	0	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17370813	17370902	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	intron	17370903	17370986	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17370987	17371226	1	+	0	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17370987	17371226	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	intron	17371227	17371318	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17371319	17371540	1	+	0	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17371319	17371540	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	intron	17371541	17371631	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17371632	17371764	1	+	0	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17371632	17371764	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	intron	17371765	17371854	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17371855	17373155	0.99	+	2	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17371855	17373155	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	intron	17373156	17373286	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17373287	17373405	1	+	0	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17373287	17373405	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	intron	17373406	17373513	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17373514	17373683	1	+	1	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17373514	17373683	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	intron	17373684	17373777	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17373778	17373857	1	+	2	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17373778	17373857	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	intron	17373858	17373994	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17373995	17374031	0.94	+	0	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17373995	17374031	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	intron	17374032	17374212	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17374213	17374264	0.87	+	2	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17374213	17374264	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	intron	17374265	17374356	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	CDS	17374357	17374369	0.89	+	1	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	exon	17374357	17374369	.	+	.	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
Ledus.S2	AUGUSTUS	stop_codon	17374370	17374372	.	+	0	transcript_id "Ledus.S2G222600.t1"; gene_id "Ledus.S2G222600"
# This transcript jg9953.t2 is derived from g10983.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9954.t1 is derived from g10984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11445938	11447120	.	-	.	Ledus.S3G143100
Ledus.S3	AUGUSTUS	transcript	11445938	11447120	.	-	.	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	stop_codon	11445935	11445937	.	-	0	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	CDS	11445938	11446099	0.82	-	0	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	exon	11445938	11446099	.	-	.	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	intron	11446100	11446196	.	-	.	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	CDS	11446197	11446379	0.47	-	0	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	exon	11446197	11446379	.	-	.	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	intron	11446380	11446550	.	-	.	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	CDS	11446551	11446656	0.39	-	1	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	exon	11446551	11446656	.	-	.	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	intron	11446657	11446937	.	-	.	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	CDS	11446938	11446955	0.35	-	1	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	exon	11446938	11446955	.	-	.	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	intron	11446956	11447097	.	-	.	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	CDS	11447098	11447120	0.84	-	0	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	exon	11447098	11447120	.	-	.	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
Ledus.S3	AUGUSTUS	start_codon	11447118	11447120	.	-	0	transcript_id "Ledus.S3G143100.t1"; gene_id "Ledus.S3G143100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5669.t1 is derived from g3108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25725935	25726201	.	+	.	Ledus.S1G309000
Ledus.S1	AUGUSTUS	transcript	25725935	25726201	.	+	.	transcript_id "Ledus.S1G309000.t1"; gene_id "Ledus.S1G309000"
Ledus.S1	AUGUSTUS	start_codon	25725935	25725937	.	+	0	transcript_id "Ledus.S1G309000.t1"; gene_id "Ledus.S1G309000"
Ledus.S1	AUGUSTUS	CDS	25725935	25726201	0.38	+	0	transcript_id "Ledus.S1G309000.t1"; gene_id "Ledus.S1G309000"
Ledus.S1	AUGUSTUS	exon	25725935	25726201	.	+	.	transcript_id "Ledus.S1G309000.t1"; gene_id "Ledus.S1G309000"
Ledus.S1	AUGUSTUS	stop_codon	25726202	25726204	.	+	0	transcript_id "Ledus.S1G309000.t1"; gene_id "Ledus.S1G309000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8970.t1 is derived from g10000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3607905	3616451	.	-	.	Ledus.S3G044700
Ledus.S3	AUGUSTUS	transcript	3607905	3616451	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	stop_codon	3607902	3607904	.	-	0	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3607905	3608093	1	-	0	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3607905	3608093	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3608094	3608170	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3608171	3608413	1	-	0	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3608171	3608413	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3608414	3608540	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3608541	3608819	1	-	0	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3608541	3608819	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3608820	3608910	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3608911	3609108	1	-	0	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3608911	3609108	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3609109	3609240	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3609241	3609402	0.98	-	0	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3609241	3609402	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3609403	3609514	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3609515	3612009	0.96	-	2	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3609515	3612009	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3612010	3612115	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3612116	3612570	0.99	-	1	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3612116	3612570	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3612571	3612669	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3612670	3612974	0.97	-	0	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3612670	3612974	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3612975	3613084	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3613085	3613668	1	-	2	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3613085	3613668	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3613669	3613810	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3613811	3613891	0.56	-	2	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3613811	3613891	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3613892	3613953	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3613954	3614061	0.74	-	2	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3613954	3614061	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3614062	3614137	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3614138	3614601	1	-	1	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3614138	3614601	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3614602	3614734	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3614735	3615227	0.99	-	2	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3614735	3615227	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3615228	3615316	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3615317	3615800	1	-	0	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3615317	3615800	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3615801	3615901	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3615902	3616025	1	-	1	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3615902	3616025	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	intron	3616026	3616194	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	CDS	3616195	3616451	0.93	-	0	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	exon	3616195	3616451	.	-	.	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
Ledus.S3	AUGUSTUS	start_codon	3616449	3616451	.	-	0	transcript_id "Ledus.S3G044700.t1"; gene_id "Ledus.S3G044700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8259.t1 is derived from g12930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10267488	10269196	.	+	.	Ledus.S5G103700
Ledus.S5	AUGUSTUS	transcript	10267488	10269196	.	+	.	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	start_codon	10267488	10267490	.	+	0	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	CDS	10267488	10267548	0.9	+	0	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	exon	10267488	10267548	.	+	.	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	intron	10267549	10267692	.	+	.	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	CDS	10267693	10267767	1	+	2	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	exon	10267693	10267767	.	+	.	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	intron	10267768	10267900	.	+	.	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	CDS	10267901	10268517	0.8	+	2	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	exon	10267901	10268517	.	+	.	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	intron	10268518	10268656	.	+	.	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	CDS	10268657	10268806	0.9	+	0	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	exon	10268657	10268806	.	+	.	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	intron	10268807	10268893	.	+	.	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	CDS	10268894	10269196	0.99	+	0	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	exon	10268894	10269196	.	+	.	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
Ledus.S5	AUGUSTUS	stop_codon	10269197	10269199	.	+	0	transcript_id "Ledus.S5G103700.t1"; gene_id "Ledus.S5G103700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9847.t1 is derived from g10877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10508507	10510252	.	-	.	Ledus.S3G132400
Ledus.S3	AUGUSTUS	transcript	10508507	10510252	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	stop_codon	10508504	10508506	.	-	0	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	CDS	10508507	10508653	0.88	-	0	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	exon	10508507	10508653	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	intron	10508654	10508729	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	CDS	10508730	10508794	0.97	-	2	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	exon	10508730	10508794	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	intron	10508795	10508907	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	CDS	10508908	10508983	1	-	0	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	exon	10508908	10508983	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	intron	10508984	10509066	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	CDS	10509067	10509222	0.6	-	0	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	exon	10509067	10509222	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	intron	10509223	10509458	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	CDS	10509459	10509572	0.85	-	0	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	exon	10509459	10509572	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	intron	10509573	10509797	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	CDS	10509798	10509914	0.98	-	0	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	exon	10509798	10509914	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	intron	10509915	10509988	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	CDS	10509989	10510252	0.86	-	0	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	exon	10509989	10510252	.	-	.	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
Ledus.S3	AUGUSTUS	start_codon	10510250	10510252	.	-	0	transcript_id "Ledus.S3G132400.t1"; gene_id "Ledus.S3G132400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12666.t1 is derived from g6288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13791387	13795191	.	+	.	Ledus.S4G182200
Ledus.S4	AUGUSTUS	transcript	13791387	13795191	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	start_codon	13791387	13791389	.	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13791387	13791518	0.92	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13791387	13791518	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13791519	13791619	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13791620	13791684	1	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13791620	13791684	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13791685	13791772	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13791773	13791863	0.54	+	1	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13791773	13791863	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13791864	13792057	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13792058	13792129	1	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13792058	13792129	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13792130	13792256	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13792257	13792460	1	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13792257	13792460	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13792461	13792557	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13792558	13792631	1	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13792558	13792631	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13792632	13792826	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13792827	13792910	1	+	1	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13792827	13792910	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13792911	13793048	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13793049	13793136	1	+	1	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13793049	13793136	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13793137	13793307	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13793308	13793389	1	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13793308	13793389	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13793390	13793519	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13793520	13793593	1	+	2	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13793520	13793593	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13793594	13793721	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13793722	13793829	1	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13793722	13793829	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13793830	13793992	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13793993	13794057	1	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13793993	13794057	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13794058	13794216	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13794217	13794330	1	+	1	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13794217	13794330	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13794331	13794472	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13794473	13794572	1	+	1	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13794473	13794572	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13794573	13794706	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13794707	13794760	1	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13794707	13794760	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13794761	13794843	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13794844	13794927	1	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13794844	13794927	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	intron	13794928	13795167	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	CDS	13795168	13795191	0.87	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	exon	13795168	13795191	.	+	.	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
Ledus.S4	AUGUSTUS	stop_codon	13795192	13795194	.	+	0	transcript_id "Ledus.S4G182200.t1"; gene_id "Ledus.S4G182200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9368.t1 is derived from g10398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6403717	6405416	.	-	.	Ledus.S3G084500
Ledus.S3	AUGUSTUS	transcript	6403717	6405416	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	stop_codon	6403714	6403716	.	-	0	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	CDS	6403717	6403815	1	-	0	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	exon	6403717	6403815	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	intron	6403816	6403934	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	CDS	6403935	6404021	0.91	-	0	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	exon	6403935	6404021	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	intron	6404022	6404134	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	CDS	6404135	6404227	1	-	0	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	exon	6404135	6404227	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	intron	6404228	6404316	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	CDS	6404317	6404389	1	-	1	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	exon	6404317	6404389	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	intron	6404390	6404482	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	CDS	6404483	6404577	1	-	0	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	exon	6404483	6404577	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	intron	6404578	6404664	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	CDS	6404665	6404752	1	-	1	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	exon	6404665	6404752	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	intron	6404753	6404973	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	CDS	6404974	6405416	0.81	-	0	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	exon	6404974	6405416	.	-	.	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
Ledus.S3	AUGUSTUS	start_codon	6405414	6405416	.	-	0	transcript_id "Ledus.S3G084500.t1"; gene_id "Ledus.S3G084500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg450.t1 is derived from g7311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2663593	2664605	.	-	.	Ledus.S2G033200
Ledus.S2	AUGUSTUS	transcript	2663593	2664605	.	-	.	transcript_id "Ledus.S2G033200.t1"; gene_id "Ledus.S2G033200"
Ledus.S2	AUGUSTUS	stop_codon	2663590	2663592	.	-	0	transcript_id "Ledus.S2G033200.t1"; gene_id "Ledus.S2G033200"
Ledus.S2	AUGUSTUS	CDS	2663593	2663844	0.54	-	0	transcript_id "Ledus.S2G033200.t1"; gene_id "Ledus.S2G033200"
Ledus.S2	AUGUSTUS	exon	2663593	2663844	.	-	.	transcript_id "Ledus.S2G033200.t1"; gene_id "Ledus.S2G033200"
Ledus.S2	AUGUSTUS	intron	2663845	2664232	.	-	.	transcript_id "Ledus.S2G033200.t1"; gene_id "Ledus.S2G033200"
Ledus.S2	AUGUSTUS	CDS	2664233	2664428	0.37	-	1	transcript_id "Ledus.S2G033200.t1"; gene_id "Ledus.S2G033200"
Ledus.S2	AUGUSTUS	exon	2664233	2664428	.	-	.	transcript_id "Ledus.S2G033200.t1"; gene_id "Ledus.S2G033200"
Ledus.S2	AUGUSTUS	intron	2664429	2664489	.	-	.	transcript_id "Ledus.S2G033200.t1"; gene_id "Ledus.S2G033200"
Ledus.S2	AUGUSTUS	CDS	2664490	2664605	0.34	-	0	transcript_id "Ledus.S2G033200.t1"; gene_id "Ledus.S2G033200"
Ledus.S2	AUGUSTUS	exon	2664490	2664605	.	-	.	transcript_id "Ledus.S2G033200.t1"; gene_id "Ledus.S2G033200"
Ledus.S2	AUGUSTUS	start_codon	2664603	2664605	.	-	0	transcript_id "Ledus.S2G033200.t1"; gene_id "Ledus.S2G033200"
# This transcript jg3823.t2 is derived from g1259.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3824.t1 is derived from g1260.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12757709	12761562	.	-	.	Ledus.S1G124500
Ledus.S1	AUGUSTUS	transcript	12757709	12761562	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	stop_codon	12757706	12757708	.	-	0	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12757709	12757789	1	-	0	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12757709	12757789	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12757790	12758662	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12758663	12758787	1	-	2	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12758663	12758787	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12758788	12758931	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12758932	12759184	0.99	-	0	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12758932	12759184	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12759185	12759293	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12759294	12759591	0.45	-	1	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12759294	12759591	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12759592	12759770	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12759771	12760263	0.41	-	2	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12759771	12760263	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12760264	12760371	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12760372	12760616	1	-	1	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12760372	12760616	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12760617	12760739	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12760740	12761041	1	-	0	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12760740	12761041	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12761042	12761161	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12761162	12761272	1	-	0	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12761162	12761272	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12761273	12761493	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12761494	12761562	1	-	0	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12761494	12761562	.	-	.	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	start_codon	12761560	12761562	.	-	0	transcript_id "Ledus.S1G124500.t1"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	transcript	12758018	12761562	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	stop_codon	12758015	12758017	.	-	0	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12758018	12758389	0.74	-	0	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12758018	12758389	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12758390	12758662	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12758663	12758787	1	-	2	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12758663	12758787	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12758788	12758931	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12758932	12759184	0.97	-	0	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12758932	12759184	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12759185	12759293	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12759294	12759591	0.3	-	1	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12759294	12759591	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12759592	12759770	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12759771	12760263	0.29	-	2	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12759771	12760263	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12760264	12760371	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12760372	12760616	1	-	1	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12760372	12760616	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12760617	12760739	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12760740	12761041	1	-	0	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12760740	12761041	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12761042	12761161	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12761162	12761272	1	-	0	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12761162	12761272	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	intron	12761273	12761493	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	CDS	12761494	12761562	1	-	0	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	exon	12761494	12761562	.	-	.	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
Ledus.S1	AUGUSTUS	start_codon	12761560	12761562	.	-	0	transcript_id "Ledus.S1G124500.t2"; gene_id "Ledus.S1G124500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11367.t1 is derived from g4985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3834119	3841274	.	-	.	Ledus.S4G052300
Ledus.S4	AUGUSTUS	transcript	3834119	3841274	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	stop_codon	3834116	3834118	.	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3834119	3834275	0.51	-	1	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3834119	3834275	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3834276	3834370	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3834371	3834450	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3834371	3834450	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3834451	3834542	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3834543	3834614	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3834543	3834614	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3834615	3834776	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3834777	3834857	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3834777	3834857	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3834858	3834940	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3834941	3835066	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3834941	3835066	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3835067	3835183	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3835184	3835270	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3835184	3835270	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3835271	3835466	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3835467	3835631	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3835467	3835631	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3835632	3835818	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3835819	3835899	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3835819	3835899	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3835900	3836011	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3836012	3836317	0.8	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3836012	3836317	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3836318	3836415	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3836416	3836592	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3836416	3836592	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3836593	3836715	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3836716	3836836	1	-	1	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3836716	3836836	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3836837	3836993	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3836994	3837098	1	-	1	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3836994	3837098	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3837099	3837259	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3837260	3837366	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3837260	3837366	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3837367	3837515	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3837516	3837581	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3837516	3837581	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3837582	3837729	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3837730	3837835	1	-	1	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3837730	3837835	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3837836	3837951	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3837952	3838040	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3837952	3838040	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3838041	3838160	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3838161	3838242	1	-	1	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3838161	3838242	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3838243	3838350	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3838351	3838448	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3838351	3838448	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3838449	3838579	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3838580	3838681	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3838580	3838681	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3838682	3838929	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3838930	3839022	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3838930	3839022	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3839023	3839121	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3839122	3839193	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3839122	3839193	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3839194	3839526	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3839527	3839734	0.99	-	1	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3839527	3839734	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3839735	3839861	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3839862	3839959	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3839862	3839959	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3839960	3840040	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3840041	3840103	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3840041	3840103	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3840104	3840308	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3840309	3840434	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3840309	3840434	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3840435	3840545	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3840546	3840677	1	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3840546	3840677	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3840678	3840861	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3840862	3841015	0.9	-	1	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3840862	3841015	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	intron	3841016	3841113	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	CDS	3841114	3841274	0.85	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	exon	3841114	3841274	.	-	.	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
Ledus.S4	AUGUSTUS	start_codon	3841272	3841274	.	-	0	transcript_id "Ledus.S4G052300.t1"; gene_id "Ledus.S4G052300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3055.t1 is derived from g490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5559443	5562254	.	+	.	Ledus.S1G047600
Ledus.S1	AUGUSTUS	transcript	5559443	5562254	.	+	.	transcript_id "Ledus.S1G047600.t1"; gene_id "Ledus.S1G047600"
Ledus.S1	AUGUSTUS	start_codon	5559443	5559445	.	+	0	transcript_id "Ledus.S1G047600.t1"; gene_id "Ledus.S1G047600"
Ledus.S1	AUGUSTUS	CDS	5559443	5561716	0.54	+	0	transcript_id "Ledus.S1G047600.t1"; gene_id "Ledus.S1G047600"
Ledus.S1	AUGUSTUS	exon	5559443	5561716	.	+	.	transcript_id "Ledus.S1G047600.t1"; gene_id "Ledus.S1G047600"
Ledus.S1	AUGUSTUS	intron	5561717	5561835	.	+	.	transcript_id "Ledus.S1G047600.t1"; gene_id "Ledus.S1G047600"
Ledus.S1	AUGUSTUS	CDS	5561836	5561948	0.89	+	0	transcript_id "Ledus.S1G047600.t1"; gene_id "Ledus.S1G047600"
Ledus.S1	AUGUSTUS	exon	5561836	5561948	.	+	.	transcript_id "Ledus.S1G047600.t1"; gene_id "Ledus.S1G047600"
Ledus.S1	AUGUSTUS	intron	5561949	5562211	.	+	.	transcript_id "Ledus.S1G047600.t1"; gene_id "Ledus.S1G047600"
Ledus.S1	AUGUSTUS	CDS	5562212	5562254	1	+	1	transcript_id "Ledus.S1G047600.t1"; gene_id "Ledus.S1G047600"
Ledus.S1	AUGUSTUS	exon	5562212	5562254	.	+	.	transcript_id "Ledus.S1G047600.t1"; gene_id "Ledus.S1G047600"
Ledus.S1	AUGUSTUS	stop_codon	5562255	5562257	.	+	0	transcript_id "Ledus.S1G047600.t1"; gene_id "Ledus.S1G047600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5054.t1 is derived from g2493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21328952	21329804	.	+	.	Ledus.S1G247500
Ledus.S1	AUGUSTUS	transcript	21328952	21329804	.	+	.	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	start_codon	21328952	21328954	.	+	0	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	CDS	21328952	21329127	0.52	+	0	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	exon	21328952	21329127	.	+	.	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	intron	21329128	21329223	.	+	.	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	CDS	21329224	21329299	0.86	+	1	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	exon	21329224	21329299	.	+	.	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	intron	21329300	21329413	.	+	.	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	CDS	21329414	21329491	0.99	+	0	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	exon	21329414	21329491	.	+	.	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	intron	21329492	21329570	.	+	.	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	CDS	21329571	21329804	0.99	+	0	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	exon	21329571	21329804	.	+	.	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
Ledus.S1	AUGUSTUS	stop_codon	21329805	21329807	.	+	0	transcript_id "Ledus.S1G247500.t1"; gene_id "Ledus.S1G247500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5061.t1 is derived from g2500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21386257	21386874	.	+	.	Ledus.S1G248200
Ledus.S1	AUGUSTUS	transcript	21386257	21386874	.	+	.	transcript_id "Ledus.S1G248200.t1"; gene_id "Ledus.S1G248200"
Ledus.S1	AUGUSTUS	start_codon	21386257	21386259	.	+	0	transcript_id "Ledus.S1G248200.t1"; gene_id "Ledus.S1G248200"
Ledus.S1	AUGUSTUS	CDS	21386257	21386581	0.65	+	0	transcript_id "Ledus.S1G248200.t1"; gene_id "Ledus.S1G248200"
Ledus.S1	AUGUSTUS	exon	21386257	21386581	.	+	.	transcript_id "Ledus.S1G248200.t1"; gene_id "Ledus.S1G248200"
Ledus.S1	AUGUSTUS	intron	21386582	21386806	.	+	.	transcript_id "Ledus.S1G248200.t1"; gene_id "Ledus.S1G248200"
Ledus.S1	AUGUSTUS	CDS	21386807	21386874	0.56	+	2	transcript_id "Ledus.S1G248200.t1"; gene_id "Ledus.S1G248200"
Ledus.S1	AUGUSTUS	exon	21386807	21386874	.	+	.	transcript_id "Ledus.S1G248200.t1"; gene_id "Ledus.S1G248200"
Ledus.S1	AUGUSTUS	stop_codon	21386875	21386877	.	+	0	transcript_id "Ledus.S1G248200.t1"; gene_id "Ledus.S1G248200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12922.t1 is derived from g4414.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	343066	347960	.	-	.	Ledus.C9G003000
Ledus.C9	AUGUSTUS	transcript	343066	347960	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	stop_codon	343063	343065	.	-	0	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343066	343096	0.8	-	1	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343066	343096	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	343097	343194	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343195	343209	0.75	-	1	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343195	343209	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	343210	343274	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343275	343309	0.8	-	0	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343275	343309	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	343310	343457	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343458	343525	1	-	2	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343458	343525	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	343526	343635	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343636	343699	0.79	-	0	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343636	343699	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	343700	343796	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343797	343878	1	-	1	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343797	343878	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	343879	343967	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343968	344026	1	-	0	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343968	344026	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	344027	344167	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	344168	344225	1	-	1	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	344168	344225	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	344226	344366	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	344367	344537	0.95	-	1	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	344367	344537	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	344538	344646	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	344647	344771	0.92	-	0	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	344647	344771	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	344772	344838	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	344839	344901	1	-	0	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	344839	344901	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	344902	345002	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	345003	345062	0.96	-	0	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	345003	345062	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	345063	345146	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	345147	345389	0.88	-	0	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	345147	345389	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	345390	345591	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	345592	345686	0.8	-	2	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	345592	345686	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	345687	345910	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	345911	346033	0.87	-	2	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	345911	346033	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	346034	346103	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	346104	346204	0.91	-	1	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	346104	346204	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	346205	346314	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	346315	346328	1	-	0	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	346315	346328	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	346329	346472	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	346473	346626	1	-	1	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	346473	346626	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	346627	346794	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	346795	346845	1	-	1	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	346795	346845	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	346846	346937	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	346938	347023	1	-	0	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	346938	347023	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	347024	347115	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	347116	347234	1	-	2	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	347116	347234	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	347235	347390	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	347391	347467	1	-	1	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	347391	347467	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	347468	347578	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	347579	347672	1	-	2	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	347579	347672	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	347673	347782	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	347783	347960	0.72	-	0	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	347783	347960	.	-	.	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	start_codon	347958	347960	.	-	0	transcript_id "Ledus.C9G003000.t1"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	transcript	343066	347960	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	stop_codon	343063	343065	.	-	0	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343066	343096	0.77	-	1	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343066	343096	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	343097	343194	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343195	343209	0.72	-	1	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343195	343209	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	343210	343274	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343275	343309	0.77	-	0	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343275	343309	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	343310	343457	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343458	343525	1	-	2	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343458	343525	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	343526	343635	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343636	343699	0.75	-	0	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343636	343699	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	343700	343796	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343797	343878	1	-	1	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343797	343878	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	343879	343967	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	343968	344026	1	-	0	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	343968	344026	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	344027	344167	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	344168	344225	1	-	1	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	344168	344225	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	344226	344366	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	344367	344537	0.96	-	1	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	344367	344537	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	344538	344646	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	344647	344771	0.85	-	0	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	344647	344771	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	344772	344838	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	344839	344901	1	-	0	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	344839	344901	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	344902	345002	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	345003	345062	0.96	-	0	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	345003	345062	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	345063	345146	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	345147	345389	0.87	-	0	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	345147	345389	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	345390	345591	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	345592	345686	0.82	-	2	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	345592	345686	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	345687	345910	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	345911	346033	0.88	-	2	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	345911	346033	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	346034	346103	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	346104	346204	0.95	-	1	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	346104	346204	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	346205	346314	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	346315	346328	1	-	0	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	346315	346328	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	346329	346472	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	346473	346638	0.95	-	1	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	346473	346638	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	346639	346794	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	346795	346845	1	-	1	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	346795	346845	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	346846	346937	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	346938	347023	1	-	0	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	346938	347023	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	347024	347115	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	347116	347234	1	-	2	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	347116	347234	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	347235	347390	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	347391	347467	1	-	1	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	347391	347467	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	347468	347578	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	347579	347672	0.99	-	2	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	347579	347672	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	intron	347673	347782	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	CDS	347783	347960	0.76	-	0	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	exon	347783	347960	.	-	.	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
Ledus.C9	AUGUSTUS	start_codon	347958	347960	.	-	0	transcript_id "Ledus.C9G003000.t2"; gene_id "Ledus.C9G003000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7691.t1 is derived from g12362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5224723	5225371	.	-	.	Ledus.S5G046900
Ledus.S5	AUGUSTUS	transcript	5224723	5225371	.	-	.	transcript_id "Ledus.S5G046900.t1"; gene_id "Ledus.S5G046900"
Ledus.S5	AUGUSTUS	stop_codon	5224720	5224722	.	-	0	transcript_id "Ledus.S5G046900.t1"; gene_id "Ledus.S5G046900"
Ledus.S5	AUGUSTUS	CDS	5224723	5225066	0.46	-	2	transcript_id "Ledus.S5G046900.t1"; gene_id "Ledus.S5G046900"
Ledus.S5	AUGUSTUS	exon	5224723	5225066	.	-	.	transcript_id "Ledus.S5G046900.t1"; gene_id "Ledus.S5G046900"
Ledus.S5	AUGUSTUS	intron	5225067	5225127	.	-	.	transcript_id "Ledus.S5G046900.t1"; gene_id "Ledus.S5G046900"
Ledus.S5	AUGUSTUS	CDS	5225128	5225371	0.33	-	0	transcript_id "Ledus.S5G046900.t1"; gene_id "Ledus.S5G046900"
Ledus.S5	AUGUSTUS	exon	5225128	5225371	.	-	.	transcript_id "Ledus.S5G046900.t1"; gene_id "Ledus.S5G046900"
Ledus.S5	AUGUSTUS	start_codon	5225369	5225371	.	-	0	transcript_id "Ledus.S5G046900.t1"; gene_id "Ledus.S5G046900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12737.t1 is derived from g6359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14165596	14167222	.	+	.	Ledus.S4G189300
Ledus.S4	AUGUSTUS	transcript	14165596	14167222	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	start_codon	14165596	14165598	.	+	0	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	CDS	14165596	14165684	0.99	+	0	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	exon	14165596	14165684	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	intron	14165685	14165773	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	CDS	14165774	14166097	1	+	1	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	exon	14165774	14166097	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	intron	14166098	14166214	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	CDS	14166215	14166473	0.98	+	1	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	exon	14166215	14166473	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	intron	14166474	14166652	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	CDS	14166653	14166733	1	+	0	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	exon	14166653	14166733	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	intron	14166734	14166814	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	CDS	14166815	14166920	1	+	0	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	exon	14166815	14166920	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	intron	14166921	14167071	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	CDS	14167072	14167101	1	+	2	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	exon	14167072	14167101	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	intron	14167102	14167193	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	CDS	14167194	14167222	1	+	2	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	exon	14167194	14167222	.	+	.	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
Ledus.S4	AUGUSTUS	stop_codon	14167223	14167225	.	+	0	transcript_id "Ledus.S4G189300.t1"; gene_id "Ledus.S4G189300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5911.t1 is derived from g3354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27743406	27748425	.	+	.	Ledus.S1G333200
Ledus.S1	AUGUSTUS	transcript	27743406	27748425	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	start_codon	27743406	27743408	.	+	0	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27743406	27743776	1	+	0	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27743406	27743776	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27743777	27743937	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27743938	27744011	1	+	1	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27743938	27744011	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27744012	27744138	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27744139	27744417	1	+	2	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27744139	27744417	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27744418	27744531	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27744532	27744595	0.76	+	2	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27744532	27744595	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27744596	27744756	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27744757	27744903	1	+	1	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27744757	27744903	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27744904	27745001	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27745002	27745036	1	+	1	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27745002	27745036	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27745037	27745162	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27745163	27745236	1	+	2	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27745163	27745236	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27745237	27745334	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27745335	27746263	0.91	+	0	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27745335	27746263	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27746264	27746451	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27746452	27746748	1	+	1	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27746452	27746748	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27746749	27746851	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27746852	27747033	0.99	+	1	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27746852	27747033	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27747034	27747181	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27747182	27747482	1	+	2	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27747182	27747482	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27747483	27747604	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27747605	27747753	1	+	1	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27747605	27747753	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27747754	27747883	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27747884	27748173	1	+	2	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27747884	27748173	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	intron	27748174	27748296	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	CDS	27748297	27748425	0.33	+	0	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	exon	27748297	27748425	.	+	.	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
Ledus.S1	AUGUSTUS	stop_codon	27748426	27748428	.	+	0	transcript_id "Ledus.S1G333200.t1"; gene_id "Ledus.S1G333200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3996.t1 is derived from g1432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13972557	13972835	.	-	.	Ledus.S1G141700
Ledus.S1	AUGUSTUS	transcript	13972557	13972835	.	-	.	transcript_id "Ledus.S1G141700.t1"; gene_id "Ledus.S1G141700"
Ledus.S1	AUGUSTUS	stop_codon	13972554	13972556	.	-	0	transcript_id "Ledus.S1G141700.t1"; gene_id "Ledus.S1G141700"
Ledus.S1	AUGUSTUS	CDS	13972557	13972835	0.63	-	0	transcript_id "Ledus.S1G141700.t1"; gene_id "Ledus.S1G141700"
Ledus.S1	AUGUSTUS	exon	13972557	13972835	.	-	.	transcript_id "Ledus.S1G141700.t1"; gene_id "Ledus.S1G141700"
Ledus.S1	AUGUSTUS	start_codon	13972833	13972835	.	-	0	transcript_id "Ledus.S1G141700.t1"; gene_id "Ledus.S1G141700"
# This transcript jg11451.t2 is derived from g5069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11452.t1 is derived from g5070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4395552	4396116	.	+	.	Ledus.S4G060800
Ledus.S4	AUGUSTUS	transcript	4395552	4396116	.	+	.	transcript_id "Ledus.S4G060800.t1"; gene_id "Ledus.S4G060800"
Ledus.S4	AUGUSTUS	start_codon	4395552	4395554	.	+	0	transcript_id "Ledus.S4G060800.t1"; gene_id "Ledus.S4G060800"
Ledus.S4	AUGUSTUS	CDS	4395552	4395896	0.99	+	0	transcript_id "Ledus.S4G060800.t1"; gene_id "Ledus.S4G060800"
Ledus.S4	AUGUSTUS	exon	4395552	4395896	.	+	.	transcript_id "Ledus.S4G060800.t1"; gene_id "Ledus.S4G060800"
Ledus.S4	AUGUSTUS	intron	4395897	4396050	.	+	.	transcript_id "Ledus.S4G060800.t1"; gene_id "Ledus.S4G060800"
Ledus.S4	AUGUSTUS	CDS	4396051	4396116	0.94	+	0	transcript_id "Ledus.S4G060800.t1"; gene_id "Ledus.S4G060800"
Ledus.S4	AUGUSTUS	exon	4396051	4396116	.	+	.	transcript_id "Ledus.S4G060800.t1"; gene_id "Ledus.S4G060800"
Ledus.S4	AUGUSTUS	stop_codon	4396117	4396119	.	+	0	transcript_id "Ledus.S4G060800.t1"; gene_id "Ledus.S4G060800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10563.t1 is derived from g11593.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16157805	16159601	.	+	.	Ledus.S3G204000
Ledus.S3	AUGUSTUS	transcript	16157805	16159601	.	+	.	transcript_id "Ledus.S3G204000.t1"; gene_id "Ledus.S3G204000"
Ledus.S3	AUGUSTUS	start_codon	16157805	16157807	.	+	0	transcript_id "Ledus.S3G204000.t1"; gene_id "Ledus.S3G204000"
Ledus.S3	AUGUSTUS	CDS	16157805	16159601	0.9	+	0	transcript_id "Ledus.S3G204000.t1"; gene_id "Ledus.S3G204000"
Ledus.S3	AUGUSTUS	exon	16157805	16159601	.	+	.	transcript_id "Ledus.S3G204000.t1"; gene_id "Ledus.S3G204000"
Ledus.S3	AUGUSTUS	stop_codon	16159602	16159604	.	+	0	transcript_id "Ledus.S3G204000.t1"; gene_id "Ledus.S3G204000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12111.t1 is derived from g5730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9547571	9549668	.	+	.	Ledus.S4G126700
Ledus.S4	AUGUSTUS	transcript	9547571	9549668	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	start_codon	9547571	9547573	.	+	0	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	CDS	9547571	9547752	0.97	+	0	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	exon	9547571	9547752	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	intron	9547753	9547823	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	CDS	9547824	9547886	1	+	1	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	exon	9547824	9547886	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	intron	9547887	9547998	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	CDS	9547999	9548115	1	+	1	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	exon	9547999	9548115	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	intron	9548116	9548193	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	CDS	9548194	9548470	1	+	1	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	exon	9548194	9548470	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	intron	9548471	9548548	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	CDS	9548549	9548707	1	+	0	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	exon	9548549	9548707	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	intron	9548708	9548994	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	CDS	9548995	9549146	1	+	0	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	exon	9548995	9549146	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	intron	9549147	9549242	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	CDS	9549243	9549325	0.67	+	1	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	exon	9549243	9549325	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	intron	9549326	9549603	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	CDS	9549604	9549668	0.68	+	2	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	exon	9549604	9549668	.	+	.	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
Ledus.S4	AUGUSTUS	stop_codon	9549669	9549671	.	+	0	transcript_id "Ledus.S4G126700.t1"; gene_id "Ledus.S4G126700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9519.t1 is derived from g10549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7547075	7555682	.	-	.	Ledus.S3G099600
Ledus.S3	AUGUSTUS	transcript	7547075	7555682	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	stop_codon	7547072	7547074	.	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7547075	7547117	0.9	-	1	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7547075	7547117	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7547118	7547272	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7547273	7547298	1	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7547273	7547298	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7547299	7547397	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7547398	7547565	1	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7547398	7547565	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7547566	7547664	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7547665	7547805	1	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7547665	7547805	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7547806	7547896	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7547897	7548004	1	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7547897	7548004	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7548005	7548081	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7548082	7548220	1	-	1	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7548082	7548220	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7548221	7548431	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7548432	7548512	0.97	-	1	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7548432	7548512	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7548513	7548627	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7548628	7548736	0.97	-	2	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7548628	7548736	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7548737	7548897	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7548898	7549026	1	-	2	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7548898	7549026	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7549027	7549170	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7549171	7549477	0.98	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7549171	7549477	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7549478	7549572	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7549573	7549641	1	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7549573	7549641	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7549642	7549772	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7549773	7550101	1	-	2	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7549773	7550101	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7550102	7550237	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7550238	7550317	1	-	1	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7550238	7550317	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7550318	7550479	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7550480	7550667	1	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7550480	7550667	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7550668	7550808	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7550809	7551086	1	-	2	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7550809	7551086	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7551087	7551318	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7551319	7551481	1	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7551319	7551481	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7551482	7551575	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7551576	7552153	0.92	-	2	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7551576	7552153	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7552154	7552241	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7552242	7552434	1	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7552242	7552434	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7552435	7552522	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7552523	7552705	1	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7552523	7552705	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7552706	7552849	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7552850	7552976	1	-	1	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7552850	7552976	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7552977	7553138	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7553139	7553245	1	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7553139	7553245	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7553246	7553491	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7553492	7553599	1	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7553492	7553599	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7553600	7553814	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7553815	7553897	1	-	2	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7553815	7553897	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7553898	7554106	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7554107	7554264	1	-	1	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7554107	7554264	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7554265	7554628	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7554629	7554692	0.98	-	2	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7554629	7554692	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7554693	7554810	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7554811	7555078	0.97	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7554811	7555078	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7555079	7555270	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7555271	7555403	1	-	1	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7555271	7555403	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	intron	7555404	7555518	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	CDS	7555519	7555682	0.79	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	exon	7555519	7555682	.	-	.	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
Ledus.S3	AUGUSTUS	start_codon	7555680	7555682	.	-	0	transcript_id "Ledus.S3G099600.t1"; gene_id "Ledus.S3G099600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg902.t1 is derived from g7763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6035472	6036688	.	-	.	Ledus.S2G078400
Ledus.S2	AUGUSTUS	transcript	6035472	6036688	.	-	.	transcript_id "Ledus.S2G078400.t1"; gene_id "Ledus.S2G078400"
Ledus.S2	AUGUSTUS	stop_codon	6035469	6035471	.	-	0	transcript_id "Ledus.S2G078400.t1"; gene_id "Ledus.S2G078400"
Ledus.S2	AUGUSTUS	CDS	6035472	6035534	0.76	-	0	transcript_id "Ledus.S2G078400.t1"; gene_id "Ledus.S2G078400"
Ledus.S2	AUGUSTUS	exon	6035472	6035534	.	-	.	transcript_id "Ledus.S2G078400.t1"; gene_id "Ledus.S2G078400"
Ledus.S2	AUGUSTUS	intron	6035535	6035661	.	-	.	transcript_id "Ledus.S2G078400.t1"; gene_id "Ledus.S2G078400"
Ledus.S2	AUGUSTUS	CDS	6035662	6035716	0.76	-	1	transcript_id "Ledus.S2G078400.t1"; gene_id "Ledus.S2G078400"
Ledus.S2	AUGUSTUS	exon	6035662	6035716	.	-	.	transcript_id "Ledus.S2G078400.t1"; gene_id "Ledus.S2G078400"
Ledus.S2	AUGUSTUS	intron	6035717	6035795	.	-	.	transcript_id "Ledus.S2G078400.t1"; gene_id "Ledus.S2G078400"
Ledus.S2	AUGUSTUS	CDS	6035796	6036688	0.53	-	0	transcript_id "Ledus.S2G078400.t1"; gene_id "Ledus.S2G078400"
Ledus.S2	AUGUSTUS	exon	6035796	6036688	.	-	.	transcript_id "Ledus.S2G078400.t1"; gene_id "Ledus.S2G078400"
Ledus.S2	AUGUSTUS	start_codon	6036686	6036688	.	-	0	transcript_id "Ledus.S2G078400.t1"; gene_id "Ledus.S2G078400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8211.t1 is derived from g12882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9899174	9902355	.	-	.	Ledus.S5G098900
Ledus.S5	AUGUSTUS	transcript	9899174	9902355	.	-	.	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	stop_codon	9899171	9899173	.	-	0	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	CDS	9899174	9899311	0.97	-	0	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	exon	9899174	9899311	.	-	.	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	intron	9899312	9899897	.	-	.	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	CDS	9899898	9900019	0.99	-	2	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	exon	9899898	9900019	.	-	.	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	intron	9900020	9900958	.	-	.	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	CDS	9900959	9900996	0.97	-	1	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	exon	9900959	9900996	.	-	.	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	intron	9900997	9902305	.	-	.	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	CDS	9902306	9902355	0.01	-	0	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	exon	9902306	9902355	.	-	.	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
Ledus.S5	AUGUSTUS	start_codon	9902353	9902355	.	-	0	transcript_id "Ledus.S5G098900.t1"; gene_id "Ledus.S5G098900"
# This transcript jg4735.t2 is derived from g2173.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4736.t1 is derived from g2174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19411851	19416532	.	-	.	Ledus.S1G215700
Ledus.S1	AUGUSTUS	transcript	19411851	19416532	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	stop_codon	19411848	19411850	.	-	0	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	CDS	19411851	19412629	1	-	2	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	exon	19411851	19412629	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	intron	19412630	19412720	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	CDS	19412721	19413323	1	-	2	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	exon	19412721	19413323	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	intron	19413324	19413561	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	CDS	19413562	19413715	1	-	0	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	exon	19413562	19413715	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	intron	19413716	19413801	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	CDS	19413802	19414009	1	-	1	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	exon	19413802	19414009	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	intron	19414010	19414145	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	CDS	19414146	19414364	1	-	1	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	exon	19414146	19414364	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	intron	19414365	19414444	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	CDS	19414445	19414704	1	-	0	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	exon	19414445	19414704	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	intron	19414705	19414799	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	CDS	19414800	19415186	1	-	0	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	exon	19414800	19415186	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	intron	19415187	19415308	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	CDS	19415309	19415458	1	-	0	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	exon	19415309	19415458	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	intron	19415459	19415633	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	CDS	19415634	19415852	1	-	0	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	exon	19415634	19415852	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	intron	19415853	19415972	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	CDS	19415973	19416037	0.88	-	2	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	exon	19415973	19416037	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	intron	19416038	19416135	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	CDS	19416136	19416532	0.36	-	0	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	exon	19416136	19416532	.	-	.	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
Ledus.S1	AUGUSTUS	start_codon	19416530	19416532	.	-	0	transcript_id "Ledus.S1G215700.t1"; gene_id "Ledus.S1G215700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7057.t1 is derived from g6588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1119080	1126936	.	+	.	Ledus.C7G011800
Ledus.C7	AUGUSTUS	transcript	1119080	1126936	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	start_codon	1119080	1119082	.	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1119080	1119111	0.44	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1119080	1119111	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1119112	1119187	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1119188	1119303	0.64	+	1	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1119188	1119303	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1119304	1119608	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1119609	1119682	0.97	+	2	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1119609	1119682	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1119683	1119958	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1119959	1120315	0.82	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1119959	1120315	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1120316	1120473	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1120474	1120519	0.92	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1120474	1120519	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1120520	1120597	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1120598	1120697	0.92	+	2	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1120598	1120697	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1120698	1120814	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1120815	1120884	0.99	+	1	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1120815	1120884	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1120885	1121154	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1121155	1121207	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1121155	1121207	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1121208	1121293	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1121294	1121351	1	+	1	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1121294	1121351	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1121352	1121443	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1121444	1121784	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1121444	1121784	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1121785	1121925	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1121926	1122001	1	+	1	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1121926	1122001	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1122002	1122272	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1122273	1122380	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1122273	1122380	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1122381	1122460	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1122461	1122529	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1122461	1122529	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1122530	1122618	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1122619	1122696	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1122619	1122696	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1122697	1122826	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1122827	1122913	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1122827	1122913	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1122914	1123052	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1123053	1123087	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1123053	1123087	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1123088	1123160	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1123161	1123266	1	+	1	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1123161	1123266	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1123267	1123387	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1123388	1123468	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1123388	1123468	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1123469	1123550	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1123551	1123643	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1123551	1123643	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1123644	1123730	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1123731	1123784	0.91	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1123731	1123784	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1123785	1123897	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1123898	1124014	0.91	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1123898	1124014	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1124015	1124111	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1124112	1124210	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1124112	1124210	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1124211	1124498	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1124499	1124546	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1124499	1124546	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1124547	1124748	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1124749	1124841	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1124749	1124841	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1124842	1125408	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1125409	1125516	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1125409	1125516	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1125517	1125643	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1125644	1125708	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1125644	1125708	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1125709	1125852	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1125853	1125958	1	+	1	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1125853	1125958	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1125959	1126263	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1126264	1126638	0.69	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1126264	1126638	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1126639	1126804	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1126805	1126936	1	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1126805	1126936	.	+	.	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	stop_codon	1126937	1126939	.	+	0	transcript_id "Ledus.C7G011800.t1"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	transcript	1119080	1126936	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	start_codon	1119080	1119082	.	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1119080	1119111	0.46	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1119080	1119111	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1119112	1119187	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1119188	1119303	0.62	+	1	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1119188	1119303	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1119304	1119608	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1119609	1119682	1	+	2	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1119609	1119682	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1119683	1119958	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1119959	1120315	0.81	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1119959	1120315	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1120316	1120545	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1120546	1120697	0.69	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1120546	1120697	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1120698	1120814	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1120815	1120884	1	+	1	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1120815	1120884	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1120885	1121154	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1121155	1121207	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1121155	1121207	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1121208	1121293	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1121294	1121351	1	+	1	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1121294	1121351	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1121352	1121443	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1121444	1121784	0.99	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1121444	1121784	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1121785	1121925	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1121926	1122001	1	+	1	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1121926	1122001	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1122002	1122272	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1122273	1122380	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1122273	1122380	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1122381	1122460	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1122461	1122529	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1122461	1122529	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1122530	1122618	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1122619	1122696	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1122619	1122696	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1122697	1122826	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1122827	1122913	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1122827	1122913	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1122914	1123052	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1123053	1123087	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1123053	1123087	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1123088	1123160	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1123161	1123266	1	+	1	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1123161	1123266	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1123267	1123387	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1123388	1123468	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1123388	1123468	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1123469	1123550	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1123551	1123643	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1123551	1123643	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1123644	1123730	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1123731	1123784	0.99	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1123731	1123784	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1123785	1123897	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1123898	1124014	0.97	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1123898	1124014	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1124015	1124111	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1124112	1124210	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1124112	1124210	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1124211	1124498	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1124499	1124546	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1124499	1124546	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1124547	1124748	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1124749	1124841	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1124749	1124841	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1124842	1125408	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1125409	1125516	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1125409	1125516	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1125517	1125643	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1125644	1125708	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1125644	1125708	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1125709	1125852	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1125853	1125958	1	+	1	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1125853	1125958	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1125959	1126263	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1126264	1126638	0.64	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1126264	1126638	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	intron	1126639	1126804	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	CDS	1126805	1126936	1	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	exon	1126805	1126936	.	+	.	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
Ledus.C7	AUGUSTUS	stop_codon	1126937	1126939	.	+	0	transcript_id "Ledus.C7G011800.t2"; gene_id "Ledus.C7G011800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2340.t1 is derived from g9203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17357703	17358127	.	-	.	Ledus.S2G222200
Ledus.S2	AUGUSTUS	transcript	17357703	17358127	.	-	.	transcript_id "Ledus.S2G222200.t1"; gene_id "Ledus.S2G222200"
Ledus.S2	AUGUSTUS	stop_codon	17357700	17357702	.	-	0	transcript_id "Ledus.S2G222200.t1"; gene_id "Ledus.S2G222200"
Ledus.S2	AUGUSTUS	CDS	17357703	17357760	0.76	-	1	transcript_id "Ledus.S2G222200.t1"; gene_id "Ledus.S2G222200"
Ledus.S2	AUGUSTUS	exon	17357703	17357760	.	-	.	transcript_id "Ledus.S2G222200.t1"; gene_id "Ledus.S2G222200"
Ledus.S2	AUGUSTUS	intron	17357761	17357909	.	-	.	transcript_id "Ledus.S2G222200.t1"; gene_id "Ledus.S2G222200"
Ledus.S2	AUGUSTUS	CDS	17357910	17358127	0.61	-	0	transcript_id "Ledus.S2G222200.t1"; gene_id "Ledus.S2G222200"
Ledus.S2	AUGUSTUS	exon	17357910	17358127	.	-	.	transcript_id "Ledus.S2G222200.t1"; gene_id "Ledus.S2G222200"
Ledus.S2	AUGUSTUS	start_codon	17358125	17358127	.	-	0	transcript_id "Ledus.S2G222200.t1"; gene_id "Ledus.S2G222200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3450.t1 is derived from g885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8422508	8423758	.	-	.	Ledus.S1G087100
Ledus.S1	AUGUSTUS	transcript	8422508	8423758	.	-	.	transcript_id "Ledus.S1G087100.t1"; gene_id "Ledus.S1G087100"
Ledus.S1	AUGUSTUS	stop_codon	8422505	8422507	.	-	0	transcript_id "Ledus.S1G087100.t1"; gene_id "Ledus.S1G087100"
Ledus.S1	AUGUSTUS	CDS	8422508	8423758	1	-	0	transcript_id "Ledus.S1G087100.t1"; gene_id "Ledus.S1G087100"
Ledus.S1	AUGUSTUS	exon	8422508	8423758	.	-	.	transcript_id "Ledus.S1G087100.t1"; gene_id "Ledus.S1G087100"
Ledus.S1	AUGUSTUS	start_codon	8423756	8423758	.	-	0	transcript_id "Ledus.S1G087100.t1"; gene_id "Ledus.S1G087100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11952.t1 is derived from g5571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7983086	7983390	.	+	.	Ledus.S4G110800
Ledus.S4	AUGUSTUS	transcript	7983086	7983390	.	+	.	transcript_id "Ledus.S4G110800.t1"; gene_id "Ledus.S4G110800"
Ledus.S4	AUGUSTUS	start_codon	7983086	7983088	.	+	0	transcript_id "Ledus.S4G110800.t1"; gene_id "Ledus.S4G110800"
Ledus.S4	AUGUSTUS	CDS	7983086	7983177	0.86	+	0	transcript_id "Ledus.S4G110800.t1"; gene_id "Ledus.S4G110800"
Ledus.S4	AUGUSTUS	exon	7983086	7983177	.	+	.	transcript_id "Ledus.S4G110800.t1"; gene_id "Ledus.S4G110800"
Ledus.S4	AUGUSTUS	intron	7983178	7983269	.	+	.	transcript_id "Ledus.S4G110800.t1"; gene_id "Ledus.S4G110800"
Ledus.S4	AUGUSTUS	CDS	7983270	7983390	1	+	1	transcript_id "Ledus.S4G110800.t1"; gene_id "Ledus.S4G110800"
Ledus.S4	AUGUSTUS	exon	7983270	7983390	.	+	.	transcript_id "Ledus.S4G110800.t1"; gene_id "Ledus.S4G110800"
Ledus.S4	AUGUSTUS	stop_codon	7983391	7983393	.	+	0	transcript_id "Ledus.S4G110800.t1"; gene_id "Ledus.S4G110800"
# This transcript jg10456.t2 is derived from g11486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10457.t1 is derived from g11487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15263468	15264625	.	-	.	Ledus.S3G193400
Ledus.S3	AUGUSTUS	transcript	15263468	15264625	.	-	.	transcript_id "Ledus.S3G193400.t1"; gene_id "Ledus.S3G193400"
Ledus.S3	AUGUSTUS	stop_codon	15263465	15263467	.	-	0	transcript_id "Ledus.S3G193400.t1"; gene_id "Ledus.S3G193400"
Ledus.S3	AUGUSTUS	CDS	15263468	15264625	0.91	-	0	transcript_id "Ledus.S3G193400.t1"; gene_id "Ledus.S3G193400"
Ledus.S3	AUGUSTUS	exon	15263468	15264625	.	-	.	transcript_id "Ledus.S3G193400.t1"; gene_id "Ledus.S3G193400"
Ledus.S3	AUGUSTUS	start_codon	15264623	15264625	.	-	0	transcript_id "Ledus.S3G193400.t1"; gene_id "Ledus.S3G193400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg171.t1 is derived from g7032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	526897	528640	.	-	.	Ledus.S2G005300
Ledus.S2	AUGUSTUS	transcript	526897	528640	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	stop_codon	526894	526896	.	-	0	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	CDS	526897	526947	1	-	0	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	exon	526897	526947	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	intron	526948	527045	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	CDS	527046	527135	1	-	0	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	exon	527046	527135	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	intron	527136	527230	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	CDS	527231	527316	1	-	2	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	exon	527231	527316	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	intron	527317	527402	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	CDS	527403	527519	1	-	2	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	exon	527403	527519	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	intron	527520	527651	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	CDS	527652	527688	1	-	0	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	exon	527652	527688	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	intron	527689	527771	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	CDS	527772	527850	1	-	1	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	exon	527772	527850	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	intron	527851	527981	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	CDS	527982	528049	1	-	0	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	exon	527982	528049	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	intron	528050	528158	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	CDS	528159	528197	1	-	0	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	exon	528159	528197	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	intron	528198	528290	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	CDS	528291	528351	1	-	1	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	exon	528291	528351	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	intron	528352	528449	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	CDS	528450	528496	1	-	0	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	exon	528450	528496	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	intron	528497	528577	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	CDS	528578	528640	0.92	-	0	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	exon	528578	528640	.	-	.	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
Ledus.S2	AUGUSTUS	start_codon	528638	528640	.	-	0	transcript_id "Ledus.S2G005300.t1"; gene_id "Ledus.S2G005300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3427.t1 is derived from g862.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8255290	8256517	.	+	.	Ledus.S1G084800
Ledus.S1	AUGUSTUS	transcript	8255290	8256517	.	+	.	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	start_codon	8255290	8255292	.	+	0	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	CDS	8255290	8255448	1	+	0	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	exon	8255290	8255448	.	+	.	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	intron	8255449	8255529	.	+	.	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	CDS	8255530	8255589	1	+	0	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	exon	8255530	8255589	.	+	.	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	intron	8255590	8255688	.	+	.	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	CDS	8255689	8255742	0.99	+	0	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	exon	8255689	8255742	.	+	.	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	intron	8255743	8255862	.	+	.	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	CDS	8255863	8255962	0.82	+	0	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	exon	8255863	8255962	.	+	.	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	intron	8255963	8256033	.	+	.	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	CDS	8256034	8256131	1	+	2	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	exon	8256034	8256131	.	+	.	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	intron	8256132	8256238	.	+	.	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	CDS	8256239	8256517	0.95	+	0	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	exon	8256239	8256517	.	+	.	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
Ledus.S1	AUGUSTUS	stop_codon	8256518	8256520	.	+	0	transcript_id "Ledus.S1G084800.t1"; gene_id "Ledus.S1G084800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12220.t1 is derived from g5839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10481088	10481399	.	+	.	Ledus.S4G137600
Ledus.S4	AUGUSTUS	transcript	10481088	10481399	.	+	.	transcript_id "Ledus.S4G137600.t1"; gene_id "Ledus.S4G137600"
Ledus.S4	AUGUSTUS	start_codon	10481088	10481090	.	+	0	transcript_id "Ledus.S4G137600.t1"; gene_id "Ledus.S4G137600"
Ledus.S4	AUGUSTUS	CDS	10481088	10481399	0.87	+	0	transcript_id "Ledus.S4G137600.t1"; gene_id "Ledus.S4G137600"
Ledus.S4	AUGUSTUS	exon	10481088	10481399	.	+	.	transcript_id "Ledus.S4G137600.t1"; gene_id "Ledus.S4G137600"
Ledus.S4	AUGUSTUS	stop_codon	10481400	10481402	.	+	0	transcript_id "Ledus.S4G137600.t1"; gene_id "Ledus.S4G137600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg989.t1 is derived from g7850.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6525572	6527057	.	-	.	Ledus.S2G087100
Ledus.S2	AUGUSTUS	transcript	6525572	6527057	.	-	.	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	stop_codon	6525569	6525571	.	-	0	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	CDS	6525572	6525775	0.41	-	0	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	exon	6525572	6525775	.	-	.	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	intron	6525776	6525887	.	-	.	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	CDS	6525888	6526028	0.5	-	0	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	exon	6525888	6526028	.	-	.	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	intron	6526029	6526118	.	-	.	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	CDS	6526119	6526319	1	-	0	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	exon	6526119	6526319	.	-	.	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	intron	6526320	6526461	.	-	.	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	CDS	6526462	6526551	1	-	0	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	exon	6526462	6526551	.	-	.	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	intron	6526552	6526646	.	-	.	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	CDS	6526647	6526826	1	-	0	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	exon	6526647	6526826	.	-	.	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	intron	6526827	6526913	.	-	.	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	CDS	6526914	6527057	0.99	-	0	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	exon	6526914	6527057	.	-	.	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
Ledus.S2	AUGUSTUS	start_codon	6527055	6527057	.	-	0	transcript_id "Ledus.S2G087100.t1"; gene_id "Ledus.S2G087100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12248.t1 is derived from g5868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10633466	10634866	.	+	.	Ledus.S4G140400
Ledus.S4	AUGUSTUS	transcript	10633466	10634866	.	+	.	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	start_codon	10633466	10633468	.	+	0	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	CDS	10633466	10633697	0.34	+	0	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	exon	10633466	10633697	.	+	.	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	intron	10633698	10633831	.	+	.	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	CDS	10633832	10633984	1	+	2	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	exon	10633832	10633984	.	+	.	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	intron	10633985	10634067	.	+	.	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	CDS	10634068	10634336	0.62	+	2	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	exon	10634068	10634336	.	+	.	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	intron	10634337	10634434	.	+	.	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	CDS	10634435	10634561	1	+	0	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	exon	10634435	10634561	.	+	.	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	intron	10634562	10634651	.	+	.	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	CDS	10634652	10634866	0.83	+	2	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	exon	10634652	10634866	.	+	.	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	stop_codon	10634867	10634869	.	+	0	transcript_id "Ledus.S4G140400.t1"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	transcript	10633922	10634866	.	+	.	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	start_codon	10633922	10633924	.	+	0	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	CDS	10633922	10633973	0.33	+	0	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	exon	10633922	10633973	.	+	.	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	intron	10633974	10634067	.	+	.	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	CDS	10634068	10634336	0.46	+	2	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	exon	10634068	10634336	.	+	.	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	intron	10634337	10634434	.	+	.	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	CDS	10634435	10634561	0.98	+	0	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	exon	10634435	10634561	.	+	.	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	intron	10634562	10634651	.	+	.	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	CDS	10634652	10634866	0.83	+	2	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	exon	10634652	10634866	.	+	.	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
Ledus.S4	AUGUSTUS	stop_codon	10634867	10634869	.	+	0	transcript_id "Ledus.S4G140400.t2"; gene_id "Ledus.S4G140400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10985.t1 is derived from g4603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1007591	1008364	.	+	.	Ledus.S4G014100
Ledus.S4	AUGUSTUS	transcript	1007591	1008364	.	+	.	transcript_id "Ledus.S4G014100.t1"; gene_id "Ledus.S4G014100"
Ledus.S4	AUGUSTUS	start_codon	1007591	1007593	.	+	0	transcript_id "Ledus.S4G014100.t1"; gene_id "Ledus.S4G014100"
Ledus.S4	AUGUSTUS	CDS	1007591	1008364	1	+	0	transcript_id "Ledus.S4G014100.t1"; gene_id "Ledus.S4G014100"
Ledus.S4	AUGUSTUS	exon	1007591	1008364	.	+	.	transcript_id "Ledus.S4G014100.t1"; gene_id "Ledus.S4G014100"
Ledus.S4	AUGUSTUS	stop_codon	1008365	1008367	.	+	0	transcript_id "Ledus.S4G014100.t1"; gene_id "Ledus.S4G014100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg487.t1 is derived from g7348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2847464	2851073	.	-	.	Ledus.S2G036900
Ledus.S2	AUGUSTUS	transcript	2847464	2851073	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	stop_codon	2847461	2847463	.	-	0	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2847464	2847679	0.93	-	0	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2847464	2847679	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	intron	2847680	2847793	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2847794	2848129	0.96	-	0	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2847794	2848129	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	intron	2848130	2848305	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2848306	2848525	1	-	1	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2848306	2848525	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	intron	2848526	2848700	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2848701	2848935	1	-	2	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2848701	2848935	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	intron	2848936	2849060	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2849061	2849240	1	-	2	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2849061	2849240	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	intron	2849241	2849369	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2849370	2849434	1	-	1	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2849370	2849434	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	intron	2849435	2849562	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2849563	2849632	1	-	2	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2849563	2849632	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	intron	2849633	2849728	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2849729	2849804	1	-	0	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2849729	2849804	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	intron	2849805	2849890	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2849891	2850016	1	-	0	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2849891	2850016	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	intron	2850017	2850240	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2850241	2850306	0.98	-	0	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2850241	2850306	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	intron	2850307	2850428	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2850429	2850601	0.7	-	2	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2850429	2850601	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	intron	2850602	2850702	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2850703	2850758	1	-	1	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2850703	2850758	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	intron	2850759	2850843	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	CDS	2850844	2851073	0.88	-	0	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	exon	2850844	2851073	.	-	.	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
Ledus.S2	AUGUSTUS	start_codon	2851071	2851073	.	-	0	transcript_id "Ledus.S2G036900.t1"; gene_id "Ledus.S2G036900"
# This transcript jg10949.t2 is derived from g4567.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10950.t1 is derived from g4568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	845640	846011	.	+	.	Ledus.S4G010600
Ledus.S4	AUGUSTUS	transcript	845640	846011	.	+	.	transcript_id "Ledus.S4G010600.t1"; gene_id "Ledus.S4G010600"
Ledus.S4	AUGUSTUS	start_codon	845640	845642	.	+	0	transcript_id "Ledus.S4G010600.t1"; gene_id "Ledus.S4G010600"
Ledus.S4	AUGUSTUS	CDS	845640	845862	0.91	+	0	transcript_id "Ledus.S4G010600.t1"; gene_id "Ledus.S4G010600"
Ledus.S4	AUGUSTUS	exon	845640	845862	.	+	.	transcript_id "Ledus.S4G010600.t1"; gene_id "Ledus.S4G010600"
Ledus.S4	AUGUSTUS	intron	845863	845955	.	+	.	transcript_id "Ledus.S4G010600.t1"; gene_id "Ledus.S4G010600"
Ledus.S4	AUGUSTUS	CDS	845956	846011	0.94	+	2	transcript_id "Ledus.S4G010600.t1"; gene_id "Ledus.S4G010600"
Ledus.S4	AUGUSTUS	exon	845956	846011	.	+	.	transcript_id "Ledus.S4G010600.t1"; gene_id "Ledus.S4G010600"
Ledus.S4	AUGUSTUS	stop_codon	846012	846014	.	+	0	transcript_id "Ledus.S4G010600.t1"; gene_id "Ledus.S4G010600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9098.t1 is derived from g10128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4567207	4571707	.	-	.	Ledus.S3G057500
Ledus.S3	AUGUSTUS	transcript	4567207	4571707	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	stop_codon	4567204	4567206	.	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4567207	4567233	0.67	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4567207	4567233	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4567234	4567316	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4567317	4567463	0.76	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4567317	4567463	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4567464	4567602	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4567603	4567695	0.98	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4567603	4567695	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4567696	4567807	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4567808	4567936	0.92	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4567808	4567936	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4567937	4568092	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4568093	4568146	1	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4568093	4568146	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4568147	4568289	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4568290	4568454	1	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4568290	4568454	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4568455	4568537	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4568538	4568623	0.99	-	2	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4568538	4568623	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4568624	4568726	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4568727	4568817	1	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4568727	4568817	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4568818	4568895	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4568896	4568994	0.99	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4568896	4568994	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4568995	4569248	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4569249	4569325	0.99	-	2	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4569249	4569325	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4569326	4569410	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4569411	4569591	1	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4569411	4569591	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4569592	4569734	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4569735	4569826	1	-	2	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4569735	4569826	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4569827	4569954	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4569955	4570080	0.74	-	2	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4569955	4570080	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4570081	4570180	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4570181	4570343	0.95	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4570181	4570343	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4570344	4570460	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4570461	4570511	0.96	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4570461	4570511	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4570512	4570604	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4570605	4570706	1	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4570605	4570706	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4570707	4570864	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4570865	4570939	1	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4570865	4570939	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4570940	4571022	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4571023	4571271	0.98	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4571023	4571271	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4571272	4571358	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4571359	4571545	0.98	-	1	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4571359	4571545	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	intron	4571546	4571645	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	CDS	4571646	4571707	0.71	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	exon	4571646	4571707	.	-	.	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
Ledus.S3	AUGUSTUS	start_codon	4571705	4571707	.	-	0	transcript_id "Ledus.S3G057500.t1"; gene_id "Ledus.S3G057500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10566.t1 is derived from g11596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16185831	16186154	.	-	.	Ledus.S3G204300
Ledus.S3	AUGUSTUS	transcript	16185831	16186154	.	-	.	transcript_id "Ledus.S3G204300.t1"; gene_id "Ledus.S3G204300"
Ledus.S3	AUGUSTUS	stop_codon	16185828	16185830	.	-	0	transcript_id "Ledus.S3G204300.t1"; gene_id "Ledus.S3G204300"
Ledus.S3	AUGUSTUS	CDS	16185831	16186154	0.99	-	0	transcript_id "Ledus.S3G204300.t1"; gene_id "Ledus.S3G204300"
Ledus.S3	AUGUSTUS	exon	16185831	16186154	.	-	.	transcript_id "Ledus.S3G204300.t1"; gene_id "Ledus.S3G204300"
Ledus.S3	AUGUSTUS	start_codon	16186152	16186154	.	-	0	transcript_id "Ledus.S3G204300.t1"; gene_id "Ledus.S3G204300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11643.t1 is derived from g5262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5715493	5715831	.	-	.	Ledus.S4G079900
Ledus.S4	AUGUSTUS	transcript	5715493	5715831	.	-	.	transcript_id "Ledus.S4G079900.t1"; gene_id "Ledus.S4G079900"
Ledus.S4	AUGUSTUS	stop_codon	5715490	5715492	.	-	0	transcript_id "Ledus.S4G079900.t1"; gene_id "Ledus.S4G079900"
Ledus.S4	AUGUSTUS	CDS	5715493	5715831	1	-	0	transcript_id "Ledus.S4G079900.t1"; gene_id "Ledus.S4G079900"
Ledus.S4	AUGUSTUS	exon	5715493	5715831	.	-	.	transcript_id "Ledus.S4G079900.t1"; gene_id "Ledus.S4G079900"
Ledus.S4	AUGUSTUS	start_codon	5715829	5715831	.	-	0	transcript_id "Ledus.S4G079900.t1"; gene_id "Ledus.S4G079900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5441.t1 is derived from g2880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24221043	24227054	.	-	.	Ledus.S1G286200
Ledus.S1	AUGUSTUS	transcript	24221043	24227054	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	stop_codon	24221040	24221042	.	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24221043	24221102	0.37	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24221043	24221102	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24221103	24221197	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24221198	24221218	0.46	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24221198	24221218	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24221219	24221326	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24221327	24221358	0.87	-	2	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24221327	24221358	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24221359	24221446	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24221447	24221472	0.77	-	1	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24221447	24221472	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24221473	24221643	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24221644	24221682	0.89	-	1	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24221644	24221682	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24221683	24221755	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24221756	24221814	1	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24221756	24221814	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24221815	24221902	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24221903	24222032	1	-	1	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24221903	24222032	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24222033	24222112	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24222113	24222177	1	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24222113	24222177	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24222178	24222253	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24222254	24222333	0.59	-	2	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24222254	24222333	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24222334	24222429	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24222430	24222442	0.63	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24222430	24222442	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24222443	24222525	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24222526	24223110	1	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24222526	24223110	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24223111	24223192	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24223193	24223444	1	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24223193	24223444	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24223445	24223532	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24223533	24223866	0.76	-	1	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24223533	24223866	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24223867	24224591	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24224592	24224695	0.38	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24224592	24224695	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24224696	24224824	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24224825	24224954	1	-	1	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24224825	24224954	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24224955	24225040	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24225041	24225105	1	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24225041	24225105	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24225106	24225230	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24225231	24225419	0.82	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24225231	24225419	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24225420	24225514	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24225515	24226108	0.99	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24225515	24226108	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24226109	24226297	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24226298	24226549	1	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24226298	24226549	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	intron	24226550	24226652	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	CDS	24226653	24227054	0.76	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	exon	24226653	24227054	.	-	.	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
Ledus.S1	AUGUSTUS	start_codon	24227052	24227054	.	-	0	transcript_id "Ledus.S1G286200.t1"; gene_id "Ledus.S1G286200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10106.t1 is derived from g11136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12732099	12732643	.	-	.	Ledus.S3G158300
Ledus.S3	AUGUSTUS	transcript	12732099	12732643	.	-	.	transcript_id "Ledus.S3G158300.t1"; gene_id "Ledus.S3G158300"
Ledus.S3	AUGUSTUS	stop_codon	12732096	12732098	.	-	0	transcript_id "Ledus.S3G158300.t1"; gene_id "Ledus.S3G158300"
Ledus.S3	AUGUSTUS	CDS	12732099	12732272	0.97	-	0	transcript_id "Ledus.S3G158300.t1"; gene_id "Ledus.S3G158300"
Ledus.S3	AUGUSTUS	exon	12732099	12732272	.	-	.	transcript_id "Ledus.S3G158300.t1"; gene_id "Ledus.S3G158300"
Ledus.S3	AUGUSTUS	intron	12732273	12732367	.	-	.	transcript_id "Ledus.S3G158300.t1"; gene_id "Ledus.S3G158300"
Ledus.S3	AUGUSTUS	CDS	12732368	12732504	0.99	-	2	transcript_id "Ledus.S3G158300.t1"; gene_id "Ledus.S3G158300"
Ledus.S3	AUGUSTUS	exon	12732368	12732504	.	-	.	transcript_id "Ledus.S3G158300.t1"; gene_id "Ledus.S3G158300"
Ledus.S3	AUGUSTUS	intron	12732505	12732588	.	-	.	transcript_id "Ledus.S3G158300.t1"; gene_id "Ledus.S3G158300"
Ledus.S3	AUGUSTUS	CDS	12732589	12732643	0.95	-	0	transcript_id "Ledus.S3G158300.t1"; gene_id "Ledus.S3G158300"
Ledus.S3	AUGUSTUS	exon	12732589	12732643	.	-	.	transcript_id "Ledus.S3G158300.t1"; gene_id "Ledus.S3G158300"
Ledus.S3	AUGUSTUS	start_codon	12732641	12732643	.	-	0	transcript_id "Ledus.S3G158300.t1"; gene_id "Ledus.S3G158300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10597.t1 is derived from g11627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16290282	16291328	.	+	.	Ledus.S3G207400
Ledus.S3	AUGUSTUS	transcript	16290282	16291328	.	+	.	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	start_codon	16290282	16290284	.	+	0	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	CDS	16290282	16290326	1	+	0	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	exon	16290282	16290326	.	+	.	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	intron	16290327	16290420	.	+	.	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	CDS	16290421	16290474	0.97	+	0	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	exon	16290421	16290474	.	+	.	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	intron	16290475	16290577	.	+	.	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	CDS	16290578	16290635	0.99	+	0	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	exon	16290578	16290635	.	+	.	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	intron	16290636	16290715	.	+	.	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	CDS	16290716	16290771	1	+	2	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	exon	16290716	16290771	.	+	.	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	intron	16290772	16290854	.	+	.	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	CDS	16290855	16290917	1	+	0	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	exon	16290855	16290917	.	+	.	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	intron	16290918	16291016	.	+	.	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	CDS	16291017	16291328	1	+	0	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	exon	16291017	16291328	.	+	.	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
Ledus.S3	AUGUSTUS	stop_codon	16291329	16291331	.	+	0	transcript_id "Ledus.S3G207400.t1"; gene_id "Ledus.S3G207400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4128.t1 is derived from g1564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14845970	14846635	.	-	.	Ledus.S1G154900
Ledus.S1	AUGUSTUS	transcript	14845970	14846635	.	-	.	transcript_id "Ledus.S1G154900.t1"; gene_id "Ledus.S1G154900"
Ledus.S1	AUGUSTUS	stop_codon	14845967	14845969	.	-	0	transcript_id "Ledus.S1G154900.t1"; gene_id "Ledus.S1G154900"
Ledus.S1	AUGUSTUS	CDS	14845970	14846635	0.99	-	0	transcript_id "Ledus.S1G154900.t1"; gene_id "Ledus.S1G154900"
Ledus.S1	AUGUSTUS	exon	14845970	14846635	.	-	.	transcript_id "Ledus.S1G154900.t1"; gene_id "Ledus.S1G154900"
Ledus.S1	AUGUSTUS	start_codon	14846633	14846635	.	-	0	transcript_id "Ledus.S1G154900.t1"; gene_id "Ledus.S1G154900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg23.t1 is derived from g6452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C17	AUGUSTUS	gene	8323	9000	.	-	.	Ledus.C17G000100
Ledus.C17	AUGUSTUS	transcript	8323	9000	.	-	.	transcript_id "Ledus.C17G000100.t1"; gene_id "Ledus.C17G000100"
Ledus.C17	AUGUSTUS	stop_codon	8320	8322	.	-	0	transcript_id "Ledus.C17G000100.t1"; gene_id "Ledus.C17G000100"
Ledus.C17	AUGUSTUS	CDS	8323	8521	0.94	-	1	transcript_id "Ledus.C17G000100.t1"; gene_id "Ledus.C17G000100"
Ledus.C17	AUGUSTUS	exon	8323	8521	.	-	.	transcript_id "Ledus.C17G000100.t1"; gene_id "Ledus.C17G000100"
Ledus.C17	AUGUSTUS	intron	8522	8725	.	-	.	transcript_id "Ledus.C17G000100.t1"; gene_id "Ledus.C17G000100"
Ledus.C17	AUGUSTUS	CDS	8726	9000	0.94	-	0	transcript_id "Ledus.C17G000100.t1"; gene_id "Ledus.C17G000100"
Ledus.C17	AUGUSTUS	exon	8726	9000	.	-	.	transcript_id "Ledus.C17G000100.t1"; gene_id "Ledus.C17G000100"
Ledus.C17	AUGUSTUS	start_codon	8998	9000	.	-	0	transcript_id "Ledus.C17G000100.t1"; gene_id "Ledus.C17G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5204.t1 is derived from g2643.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22452743	22459790	.	+	.	Ledus.S1G262500
Ledus.S1	AUGUSTUS	transcript	22452743	22459790	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	start_codon	22452743	22452745	.	+	0	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22452743	22452842	0.33	+	0	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22452743	22452842	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22452843	22452994	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22452995	22453074	0.79	+	2	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22452995	22453074	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22453075	22453538	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22453539	22453615	1	+	0	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22453539	22453615	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22453616	22453798	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22453799	22455665	0.98	+	1	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22453799	22455665	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22455666	22455782	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22455783	22456834	1	+	0	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22455783	22456834	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22456835	22456965	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22456966	22457431	1	+	1	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22456966	22457431	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22457432	22457570	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22457571	22457679	1	+	0	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22457571	22457679	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22457680	22457761	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22457762	22457877	1	+	2	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22457762	22457877	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22457878	22457975	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22457976	22458163	0.99	+	0	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22457976	22458163	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22458164	22458266	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22458267	22458563	0.99	+	1	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22458267	22458563	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22458564	22458809	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22458810	22459273	0.6	+	1	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22458810	22459273	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22459274	22459367	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22459368	22459460	0.71	+	2	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22459368	22459460	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22459461	22459595	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22459596	22459616	0.4	+	2	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22459596	22459616	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22459617	22459716	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22459717	22459790	0.92	+	2	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22459717	22459790	.	+	.	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	stop_codon	22459791	22459793	.	+	0	transcript_id "Ledus.S1G262500.t1"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	transcript	22452743	22459790	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	start_codon	22452743	22452745	.	+	0	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22452743	22452842	0.33	+	0	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22452743	22452842	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22452843	22452994	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22452995	22453074	0.86	+	2	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22452995	22453074	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22453075	22453538	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22453539	22453615	1	+	0	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22453539	22453615	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22453616	22453798	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22453799	22455665	0.99	+	1	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22453799	22455665	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22455666	22455782	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22455783	22456834	1	+	0	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22455783	22456834	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22456835	22456965	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22456966	22457431	1	+	1	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22456966	22457431	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22457432	22457570	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22457571	22457679	1	+	0	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22457571	22457679	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22457680	22457764	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22457765	22457877	1	+	2	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22457765	22457877	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22457878	22457975	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22457976	22458163	0.98	+	0	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22457976	22458163	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22458164	22458266	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22458267	22458563	0.99	+	1	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22458267	22458563	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22458564	22458809	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22458810	22459273	0.62	+	1	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22458810	22459273	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22459274	22459367	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22459368	22459460	0.65	+	2	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22459368	22459460	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22459461	22459595	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22459596	22459616	0.32	+	2	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22459596	22459616	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	intron	22459617	22459716	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	CDS	22459717	22459790	0.95	+	2	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	exon	22459717	22459790	.	+	.	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
Ledus.S1	AUGUSTUS	stop_codon	22459791	22459793	.	+	0	transcript_id "Ledus.S1G262500.t2"; gene_id "Ledus.S1G262500"
# This transcript jg5621.t1 is derived from g3060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25418438	25419117	.	+	.	Ledus.S1G304200
Ledus.S1	AUGUSTUS	transcript	25418438	25419117	.	+	.	transcript_id "Ledus.S1G304200.t1"; gene_id "Ledus.S1G304200"
Ledus.S1	AUGUSTUS	start_codon	25418438	25418440	.	+	0	transcript_id "Ledus.S1G304200.t1"; gene_id "Ledus.S1G304200"
Ledus.S1	AUGUSTUS	CDS	25418438	25418467	0.43	+	0	transcript_id "Ledus.S1G304200.t1"; gene_id "Ledus.S1G304200"
Ledus.S1	AUGUSTUS	exon	25418438	25418467	.	+	.	transcript_id "Ledus.S1G304200.t1"; gene_id "Ledus.S1G304200"
Ledus.S1	AUGUSTUS	intron	25418468	25418550	.	+	.	transcript_id "Ledus.S1G304200.t1"; gene_id "Ledus.S1G304200"
Ledus.S1	AUGUSTUS	CDS	25418551	25419117	0.47	+	0	transcript_id "Ledus.S1G304200.t1"; gene_id "Ledus.S1G304200"
Ledus.S1	AUGUSTUS	exon	25418551	25419117	.	+	.	transcript_id "Ledus.S1G304200.t1"; gene_id "Ledus.S1G304200"
Ledus.S1	AUGUSTUS	stop_codon	25419118	25419120	.	+	0	transcript_id "Ledus.S1G304200.t1"; gene_id "Ledus.S1G304200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6559.t1 is derived from g4002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32399758	32401022	.	+	.	Ledus.S1G398000
Ledus.S1	AUGUSTUS	transcript	32399758	32401022	.	+	.	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	start_codon	32399758	32399760	.	+	0	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	CDS	32399758	32400110	1	+	0	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	exon	32399758	32400110	.	+	.	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	intron	32400111	32400251	.	+	.	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	CDS	32400252	32400330	1	+	1	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	exon	32400252	32400330	.	+	.	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	intron	32400331	32400428	.	+	.	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	CDS	32400429	32400518	1	+	0	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	exon	32400429	32400518	.	+	.	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	intron	32400519	32400615	.	+	.	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	CDS	32400616	32400655	0.62	+	0	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	exon	32400616	32400655	.	+	.	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	intron	32400656	32400816	.	+	.	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	CDS	32400817	32400864	1	+	2	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	exon	32400817	32400864	.	+	.	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	intron	32400865	32400942	.	+	.	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	CDS	32400943	32401022	1	+	2	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	exon	32400943	32401022	.	+	.	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
Ledus.S1	AUGUSTUS	stop_codon	32401023	32401025	.	+	0	transcript_id "Ledus.S1G398000.t1"; gene_id "Ledus.S1G398000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1799.t1 is derived from g8662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12672806	12674068	.	-	.	Ledus.S2G168100
Ledus.S2	AUGUSTUS	transcript	12672806	12674068	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	stop_codon	12672803	12672805	.	-	0	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	CDS	12672806	12672940	1	-	0	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	exon	12672806	12672940	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	intron	12672941	12673027	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	CDS	12673028	12673113	1	-	2	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	exon	12673028	12673113	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	intron	12673114	12673191	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	CDS	12673192	12673275	1	-	2	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	exon	12673192	12673275	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	intron	12673276	12673346	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	CDS	12673347	12673440	1	-	0	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	exon	12673347	12673440	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	intron	12673441	12673523	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	CDS	12673524	12673650	1	-	1	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	exon	12673524	12673650	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	intron	12673651	12673753	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	CDS	12673754	12673775	1	-	2	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	exon	12673754	12673775	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	intron	12673776	12673917	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	CDS	12673918	12674068	1	-	0	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	exon	12673918	12674068	.	-	.	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
Ledus.S2	AUGUSTUS	start_codon	12674066	12674068	.	-	0	transcript_id "Ledus.S2G168100.t1"; gene_id "Ledus.S2G168100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8221.t1 is derived from g12892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10010384	10010893	.	+	.	Ledus.S5G099900
Ledus.S5	AUGUSTUS	transcript	10010384	10010893	.	+	.	transcript_id "Ledus.S5G099900.t1"; gene_id "Ledus.S5G099900"
Ledus.S5	AUGUSTUS	start_codon	10010384	10010386	.	+	0	transcript_id "Ledus.S5G099900.t1"; gene_id "Ledus.S5G099900"
Ledus.S5	AUGUSTUS	CDS	10010384	10010425	1	+	0	transcript_id "Ledus.S5G099900.t1"; gene_id "Ledus.S5G099900"
Ledus.S5	AUGUSTUS	exon	10010384	10010425	.	+	.	transcript_id "Ledus.S5G099900.t1"; gene_id "Ledus.S5G099900"
Ledus.S5	AUGUSTUS	intron	10010426	10010506	.	+	.	transcript_id "Ledus.S5G099900.t1"; gene_id "Ledus.S5G099900"
Ledus.S5	AUGUSTUS	CDS	10010507	10010893	0.99	+	0	transcript_id "Ledus.S5G099900.t1"; gene_id "Ledus.S5G099900"
Ledus.S5	AUGUSTUS	exon	10010507	10010893	.	+	.	transcript_id "Ledus.S5G099900.t1"; gene_id "Ledus.S5G099900"
Ledus.S5	AUGUSTUS	stop_codon	10010894	10010896	.	+	0	transcript_id "Ledus.S5G099900.t1"; gene_id "Ledus.S5G099900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7659.t1 is derived from g12330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4888067	4888420	.	-	.	Ledus.S5G043700
Ledus.S5	AUGUSTUS	transcript	4888067	4888420	.	-	.	transcript_id "Ledus.S5G043700.t1"; gene_id "Ledus.S5G043700"
Ledus.S5	AUGUSTUS	stop_codon	4888064	4888066	.	-	0	transcript_id "Ledus.S5G043700.t1"; gene_id "Ledus.S5G043700"
Ledus.S5	AUGUSTUS	CDS	4888067	4888420	0.49	-	0	transcript_id "Ledus.S5G043700.t1"; gene_id "Ledus.S5G043700"
Ledus.S5	AUGUSTUS	exon	4888067	4888420	.	-	.	transcript_id "Ledus.S5G043700.t1"; gene_id "Ledus.S5G043700"
Ledus.S5	AUGUSTUS	start_codon	4888418	4888420	.	-	0	transcript_id "Ledus.S5G043700.t1"; gene_id "Ledus.S5G043700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3153.t1 is derived from g588.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6355583	6357760	.	-	.	Ledus.S1G057400
Ledus.S1	AUGUSTUS	transcript	6355583	6356884	.	-	.	transcript_id "Ledus.S1G057400.t1"; gene_id "Ledus.S1G057400"
Ledus.S1	AUGUSTUS	stop_codon	6355580	6355582	.	-	0	transcript_id "Ledus.S1G057400.t1"; gene_id "Ledus.S1G057400"
Ledus.S1	AUGUSTUS	CDS	6355583	6356884	0.95	-	0	transcript_id "Ledus.S1G057400.t1"; gene_id "Ledus.S1G057400"
Ledus.S1	AUGUSTUS	exon	6355583	6356884	.	-	.	transcript_id "Ledus.S1G057400.t1"; gene_id "Ledus.S1G057400"
Ledus.S1	AUGUSTUS	start_codon	6356882	6356884	.	-	0	transcript_id "Ledus.S1G057400.t1"; gene_id "Ledus.S1G057400"
Ledus.S1	AUGUSTUS	transcript	6355583	6357760	.	-	.	transcript_id "Ledus.S1G057400.t2"; gene_id "Ledus.S1G057400"
Ledus.S1	AUGUSTUS	stop_codon	6355580	6355582	.	-	0	transcript_id "Ledus.S1G057400.t2"; gene_id "Ledus.S1G057400"
Ledus.S1	AUGUSTUS	CDS	6355583	6357760	0.95	-	0	transcript_id "Ledus.S1G057400.t2"; gene_id "Ledus.S1G057400"
Ledus.S1	AUGUSTUS	exon	6355583	6357760	.	-	.	transcript_id "Ledus.S1G057400.t2"; gene_id "Ledus.S1G057400"
Ledus.S1	AUGUSTUS	start_codon	6357758	6357760	.	-	0	transcript_id "Ledus.S1G057400.t2"; gene_id "Ledus.S1G057400"
# This transcript jg5721.t2 is derived from g3160.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5722.t1 is derived from g3161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26226342	26227133	.	+	.	Ledus.S1G314300
Ledus.S1	AUGUSTUS	transcript	26226342	26227133	.	+	.	transcript_id "Ledus.S1G314300.t1"; gene_id "Ledus.S1G314300"
Ledus.S1	AUGUSTUS	start_codon	26226342	26226344	.	+	0	transcript_id "Ledus.S1G314300.t1"; gene_id "Ledus.S1G314300"
Ledus.S1	AUGUSTUS	CDS	26226342	26226668	0.59	+	0	transcript_id "Ledus.S1G314300.t1"; gene_id "Ledus.S1G314300"
Ledus.S1	AUGUSTUS	exon	26226342	26226668	.	+	.	transcript_id "Ledus.S1G314300.t1"; gene_id "Ledus.S1G314300"
Ledus.S1	AUGUSTUS	intron	26226669	26226800	.	+	.	transcript_id "Ledus.S1G314300.t1"; gene_id "Ledus.S1G314300"
Ledus.S1	AUGUSTUS	CDS	26226801	26227133	0.64	+	0	transcript_id "Ledus.S1G314300.t1"; gene_id "Ledus.S1G314300"
Ledus.S1	AUGUSTUS	exon	26226801	26227133	.	+	.	transcript_id "Ledus.S1G314300.t1"; gene_id "Ledus.S1G314300"
Ledus.S1	AUGUSTUS	stop_codon	26227134	26227136	.	+	0	transcript_id "Ledus.S1G314300.t1"; gene_id "Ledus.S1G314300"
# This transcript jg10783.t2 is derived from g11815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10783.t3 is derived from g11815.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10784.t1 is derived from g11816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17672908	17673656	.	-	.	Ledus.S3G226100
Ledus.S3	AUGUSTUS	transcript	17672908	17673656	.	-	.	transcript_id "Ledus.S3G226100.t1"; gene_id "Ledus.S3G226100"
Ledus.S3	AUGUSTUS	stop_codon	17672905	17672907	.	-	0	transcript_id "Ledus.S3G226100.t1"; gene_id "Ledus.S3G226100"
Ledus.S3	AUGUSTUS	CDS	17672908	17673133	0.48	-	1	transcript_id "Ledus.S3G226100.t1"; gene_id "Ledus.S3G226100"
Ledus.S3	AUGUSTUS	exon	17672908	17673133	.	-	.	transcript_id "Ledus.S3G226100.t1"; gene_id "Ledus.S3G226100"
Ledus.S3	AUGUSTUS	intron	17673134	17673237	.	-	.	transcript_id "Ledus.S3G226100.t1"; gene_id "Ledus.S3G226100"
Ledus.S3	AUGUSTUS	CDS	17673238	17673656	0.48	-	0	transcript_id "Ledus.S3G226100.t1"; gene_id "Ledus.S3G226100"
Ledus.S3	AUGUSTUS	exon	17673238	17673656	.	-	.	transcript_id "Ledus.S3G226100.t1"; gene_id "Ledus.S3G226100"
Ledus.S3	AUGUSTUS	start_codon	17673654	17673656	.	-	0	transcript_id "Ledus.S3G226100.t1"; gene_id "Ledus.S3G226100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11733.t1 is derived from g5352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6324819	6326890	.	-	.	Ledus.S4G088900
Ledus.S4	AUGUSTUS	transcript	6324819	6326890	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	stop_codon	6324816	6324818	.	-	0	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	CDS	6324819	6325562	0.97	-	0	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	exon	6324819	6325562	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	intron	6325563	6325683	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	CDS	6325684	6325824	1	-	0	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	exon	6325684	6325824	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	intron	6325825	6325974	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	CDS	6325975	6326025	1	-	0	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	exon	6325975	6326025	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	intron	6326026	6326134	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	CDS	6326135	6326260	1	-	0	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	exon	6326135	6326260	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	intron	6326261	6326423	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	CDS	6326424	6326489	1	-	0	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	exon	6326424	6326489	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	intron	6326490	6326571	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	CDS	6326572	6326652	1	-	0	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	exon	6326572	6326652	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	intron	6326653	6326770	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	CDS	6326771	6326890	0.66	-	0	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	exon	6326771	6326890	.	-	.	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
Ledus.S4	AUGUSTUS	start_codon	6326888	6326890	.	-	0	transcript_id "Ledus.S4G088900.t1"; gene_id "Ledus.S4G088900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10898.t1 is derived from g4516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	375320	375949	.	-	.	Ledus.S4G005400
Ledus.S4	AUGUSTUS	transcript	375320	375949	.	-	.	transcript_id "Ledus.S4G005400.t1"; gene_id "Ledus.S4G005400"
Ledus.S4	AUGUSTUS	stop_codon	375317	375319	.	-	0	transcript_id "Ledus.S4G005400.t1"; gene_id "Ledus.S4G005400"
Ledus.S4	AUGUSTUS	CDS	375320	375419	1	-	1	transcript_id "Ledus.S4G005400.t1"; gene_id "Ledus.S4G005400"
Ledus.S4	AUGUSTUS	exon	375320	375419	.	-	.	transcript_id "Ledus.S4G005400.t1"; gene_id "Ledus.S4G005400"
Ledus.S4	AUGUSTUS	intron	375420	375752	.	-	.	transcript_id "Ledus.S4G005400.t1"; gene_id "Ledus.S4G005400"
Ledus.S4	AUGUSTUS	CDS	375753	375949	1	-	0	transcript_id "Ledus.S4G005400.t1"; gene_id "Ledus.S4G005400"
Ledus.S4	AUGUSTUS	exon	375753	375949	.	-	.	transcript_id "Ledus.S4G005400.t1"; gene_id "Ledus.S4G005400"
Ledus.S4	AUGUSTUS	start_codon	375947	375949	.	-	0	transcript_id "Ledus.S4G005400.t1"; gene_id "Ledus.S4G005400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2719.t1 is derived from g152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2516084	2517636	.	+	.	Ledus.S1G014000
Ledus.S1	AUGUSTUS	transcript	2516084	2517636	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	start_codon	2516084	2516086	.	+	0	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	CDS	2516084	2516180	0.43	+	0	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	exon	2516084	2516180	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	intron	2516181	2516319	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	CDS	2516320	2516341	1	+	2	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	exon	2516320	2516341	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	intron	2516342	2516436	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	CDS	2516437	2516493	1	+	1	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	exon	2516437	2516493	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	intron	2516494	2516590	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	CDS	2516591	2516672	1	+	1	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	exon	2516591	2516672	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	intron	2516673	2516752	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	CDS	2516753	2516848	1	+	0	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	exon	2516753	2516848	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	intron	2516849	2516946	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	CDS	2516947	2517071	1	+	0	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	exon	2516947	2517071	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	intron	2517072	2517185	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	CDS	2517186	2517204	1	+	1	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	exon	2517186	2517204	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	intron	2517205	2517339	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	CDS	2517340	2517636	1	+	0	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	exon	2517340	2517636	.	+	.	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
Ledus.S1	AUGUSTUS	stop_codon	2517637	2517639	.	+	0	transcript_id "Ledus.S1G014000.t1"; gene_id "Ledus.S1G014000"
# This transcript jg12104.t2 is derived from g5723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12105.t1 is derived from g5724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9517754	9518398	.	+	.	Ledus.S4G126100
Ledus.S4	AUGUSTUS	transcript	9517754	9518398	.	+	.	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	start_codon	9517754	9517756	.	+	0	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	CDS	9517754	9517770	0.81	+	0	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	exon	9517754	9517770	.	+	.	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	intron	9517771	9517993	.	+	.	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	CDS	9517994	9518042	1	+	1	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	exon	9517994	9518042	.	+	.	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	intron	9518043	9518127	.	+	.	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	CDS	9518128	9518221	0.57	+	0	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	exon	9518128	9518221	.	+	.	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	intron	9518222	9518318	.	+	.	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	CDS	9518319	9518398	0.95	+	2	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	exon	9518319	9518398	.	+	.	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
Ledus.S4	AUGUSTUS	stop_codon	9518399	9518401	.	+	0	transcript_id "Ledus.S4G126100.t1"; gene_id "Ledus.S4G126100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2652.t1 is derived from g85.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1212920	1213375	.	-	.	Ledus.S1G007300
Ledus.S1	AUGUSTUS	transcript	1212920	1213375	.	-	.	transcript_id "Ledus.S1G007300.t1"; gene_id "Ledus.S1G007300"
Ledus.S1	AUGUSTUS	stop_codon	1212917	1212919	.	-	0	transcript_id "Ledus.S1G007300.t1"; gene_id "Ledus.S1G007300"
Ledus.S1	AUGUSTUS	CDS	1212920	1212925	1	-	0	transcript_id "Ledus.S1G007300.t1"; gene_id "Ledus.S1G007300"
Ledus.S1	AUGUSTUS	exon	1212920	1212925	.	-	.	transcript_id "Ledus.S1G007300.t1"; gene_id "Ledus.S1G007300"
Ledus.S1	AUGUSTUS	intron	1212926	1213007	.	-	.	transcript_id "Ledus.S1G007300.t1"; gene_id "Ledus.S1G007300"
Ledus.S1	AUGUSTUS	CDS	1213008	1213123	1	-	2	transcript_id "Ledus.S1G007300.t1"; gene_id "Ledus.S1G007300"
Ledus.S1	AUGUSTUS	exon	1213008	1213123	.	-	.	transcript_id "Ledus.S1G007300.t1"; gene_id "Ledus.S1G007300"
Ledus.S1	AUGUSTUS	intron	1213124	1213215	.	-	.	transcript_id "Ledus.S1G007300.t1"; gene_id "Ledus.S1G007300"
Ledus.S1	AUGUSTUS	CDS	1213216	1213375	1	-	0	transcript_id "Ledus.S1G007300.t1"; gene_id "Ledus.S1G007300"
Ledus.S1	AUGUSTUS	exon	1213216	1213375	.	-	.	transcript_id "Ledus.S1G007300.t1"; gene_id "Ledus.S1G007300"
Ledus.S1	AUGUSTUS	start_codon	1213373	1213375	.	-	0	transcript_id "Ledus.S1G007300.t1"; gene_id "Ledus.S1G007300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12228.t1 is derived from g5847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10505719	10506279	.	+	.	Ledus.S4G138400
Ledus.S4	AUGUSTUS	transcript	10505719	10506279	.	+	.	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	start_codon	10505719	10505721	.	+	0	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	CDS	10505719	10505726	1	+	0	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	exon	10505719	10505726	.	+	.	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	intron	10505727	10505831	.	+	.	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	CDS	10505832	10505879	0.99	+	1	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	exon	10505832	10505879	.	+	.	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	intron	10505880	10505977	.	+	.	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	CDS	10505978	10506089	1	+	1	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	exon	10505978	10506089	.	+	.	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	intron	10506090	10506225	.	+	.	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	CDS	10506226	10506279	1	+	0	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	exon	10506226	10506279	.	+	.	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
Ledus.S4	AUGUSTUS	stop_codon	10506280	10506282	.	+	0	transcript_id "Ledus.S4G138400.t1"; gene_id "Ledus.S4G138400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9491.t1 is derived from g10521.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7353741	7355663	.	+	.	Ledus.S3G096800
Ledus.S3	AUGUSTUS	transcript	7353741	7355663	.	+	.	transcript_id "Ledus.S3G096800.t1"; gene_id "Ledus.S3G096800"
Ledus.S3	AUGUSTUS	start_codon	7353741	7353743	.	+	0	transcript_id "Ledus.S3G096800.t1"; gene_id "Ledus.S3G096800"
Ledus.S3	AUGUSTUS	CDS	7353741	7355663	0.88	+	0	transcript_id "Ledus.S3G096800.t1"; gene_id "Ledus.S3G096800"
Ledus.S3	AUGUSTUS	exon	7353741	7355663	.	+	.	transcript_id "Ledus.S3G096800.t1"; gene_id "Ledus.S3G096800"
Ledus.S3	AUGUSTUS	stop_codon	7355664	7355666	.	+	0	transcript_id "Ledus.S3G096800.t1"; gene_id "Ledus.S3G096800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5136.t1 is derived from g2575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21898728	21900588	.	+	.	Ledus.S1G255700
Ledus.S1	AUGUSTUS	transcript	21898728	21900588	.	+	.	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	start_codon	21898728	21898730	.	+	0	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	CDS	21898728	21899315	0.89	+	0	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	exon	21898728	21899315	.	+	.	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	intron	21899316	21899387	.	+	.	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	CDS	21899388	21899394	0.67	+	0	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	exon	21899388	21899394	.	+	.	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	intron	21899395	21900015	.	+	.	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	CDS	21900016	21900056	0.66	+	2	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	exon	21900016	21900056	.	+	.	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	intron	21900057	21900132	.	+	.	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	CDS	21900133	21900588	0.56	+	0	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	exon	21900133	21900588	.	+	.	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
Ledus.S1	AUGUSTUS	stop_codon	21900589	21900591	.	+	0	transcript_id "Ledus.S1G255700.t1"; gene_id "Ledus.S1G255700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5934.t1 is derived from g3377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27901761	27904524	.	-	.	Ledus.S1G335500
Ledus.S1	AUGUSTUS	transcript	27901761	27904524	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	stop_codon	27901758	27901760	.	-	0	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	CDS	27901761	27901868	0.94	-	0	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	exon	27901761	27901868	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	intron	27901869	27901967	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	CDS	27901968	27902073	1	-	1	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	exon	27901968	27902073	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	intron	27902074	27902159	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	CDS	27902160	27902273	0.55	-	1	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	exon	27902160	27902273	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	intron	27902274	27902350	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	CDS	27902351	27902599	0.55	-	1	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	exon	27902351	27902599	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	intron	27902600	27902768	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	CDS	27902769	27902920	0.98	-	0	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	exon	27902769	27902920	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	intron	27902921	27903029	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	CDS	27903030	27903506	0.95	-	0	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	exon	27903030	27903506	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	intron	27903507	27903849	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	CDS	27903850	27904524	0.9	-	0	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	exon	27903850	27904524	.	-	.	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
Ledus.S1	AUGUSTUS	start_codon	27904522	27904524	.	-	0	transcript_id "Ledus.S1G335500.t1"; gene_id "Ledus.S1G335500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3213.t1 is derived from g648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6885549	6891145	.	-	.	Ledus.S1G063400
Ledus.S1	AUGUSTUS	transcript	6885549	6891145	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	stop_codon	6885546	6885548	.	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6885549	6885677	0.91	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6885549	6885677	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6885678	6885761	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6885762	6885989	1	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6885762	6885989	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6885990	6886064	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6886065	6886499	1	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6886065	6886499	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6886500	6886568	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6886569	6886688	1	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6886569	6886688	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6886689	6886770	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6886771	6886956	1	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6886771	6886956	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6886957	6887045	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6887046	6887301	1	-	1	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6887046	6887301	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6887302	6887466	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6887467	6887510	1	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6887467	6887510	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6887511	6887785	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6887786	6887935	1	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6887786	6887935	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6887936	6888011	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6888012	6888096	1	-	1	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6888012	6888096	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6888097	6888199	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6888200	6888289	1	-	1	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6888200	6888289	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6888290	6888384	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6888385	6888523	1	-	2	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6888385	6888523	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6888524	6888654	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6888655	6888837	0.99	-	2	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6888655	6888837	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6888838	6888955	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6888956	6889079	0.99	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6888956	6889079	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6889080	6889196	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6889197	6889283	1	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6889197	6889283	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6889284	6889411	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6889412	6889567	1	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6889412	6889567	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6889568	6889745	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6889746	6889955	1	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6889746	6889955	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6889956	6890096	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6890097	6890285	1	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6890097	6890285	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6890286	6890410	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6890411	6890546	1	-	1	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6890411	6890546	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6890547	6890681	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6890682	6890815	1	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6890682	6890815	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6890816	6890898	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6890899	6891016	1	-	1	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6890899	6891016	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	intron	6891017	6891104	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	CDS	6891105	6891145	0.98	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	exon	6891105	6891145	.	-	.	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
Ledus.S1	AUGUSTUS	start_codon	6891143	6891145	.	-	0	transcript_id "Ledus.S1G063400.t1"; gene_id "Ledus.S1G063400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10722.t1 is derived from g11752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17370667	17371435	.	-	.	Ledus.S3G219900
Ledus.S3	AUGUSTUS	transcript	17370667	17371435	.	-	.	transcript_id "Ledus.S3G219900.t1"; gene_id "Ledus.S3G219900"
Ledus.S3	AUGUSTUS	stop_codon	17370664	17370666	.	-	0	transcript_id "Ledus.S3G219900.t1"; gene_id "Ledus.S3G219900"
Ledus.S3	AUGUSTUS	CDS	17370667	17371247	1	-	2	transcript_id "Ledus.S3G219900.t1"; gene_id "Ledus.S3G219900"
Ledus.S3	AUGUSTUS	exon	17370667	17371247	.	-	.	transcript_id "Ledus.S3G219900.t1"; gene_id "Ledus.S3G219900"
Ledus.S3	AUGUSTUS	intron	17371248	17371398	.	-	.	transcript_id "Ledus.S3G219900.t1"; gene_id "Ledus.S3G219900"
Ledus.S3	AUGUSTUS	CDS	17371399	17371435	0.87	-	0	transcript_id "Ledus.S3G219900.t1"; gene_id "Ledus.S3G219900"
Ledus.S3	AUGUSTUS	exon	17371399	17371435	.	-	.	transcript_id "Ledus.S3G219900.t1"; gene_id "Ledus.S3G219900"
Ledus.S3	AUGUSTUS	start_codon	17371433	17371435	.	-	0	transcript_id "Ledus.S3G219900.t1"; gene_id "Ledus.S3G219900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5640.t1 is derived from g3079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25547101	25549617	.	-	.	Ledus.S1G306100
Ledus.S1	AUGUSTUS	transcript	25547101	25549617	.	-	.	transcript_id "Ledus.S1G306100.t1"; gene_id "Ledus.S1G306100"
Ledus.S1	AUGUSTUS	stop_codon	25547098	25547100	.	-	0	transcript_id "Ledus.S1G306100.t1"; gene_id "Ledus.S1G306100"
Ledus.S1	AUGUSTUS	CDS	25547101	25549446	0.63	-	0	transcript_id "Ledus.S1G306100.t1"; gene_id "Ledus.S1G306100"
Ledus.S1	AUGUSTUS	exon	25547101	25549446	.	-	.	transcript_id "Ledus.S1G306100.t1"; gene_id "Ledus.S1G306100"
Ledus.S1	AUGUSTUS	intron	25549447	25549537	.	-	.	transcript_id "Ledus.S1G306100.t1"; gene_id "Ledus.S1G306100"
Ledus.S1	AUGUSTUS	CDS	25549538	25549544	0.78	-	1	transcript_id "Ledus.S1G306100.t1"; gene_id "Ledus.S1G306100"
Ledus.S1	AUGUSTUS	exon	25549538	25549544	.	-	.	transcript_id "Ledus.S1G306100.t1"; gene_id "Ledus.S1G306100"
Ledus.S1	AUGUSTUS	intron	25549545	25549609	.	-	.	transcript_id "Ledus.S1G306100.t1"; gene_id "Ledus.S1G306100"
Ledus.S1	AUGUSTUS	CDS	25549610	25549617	0.78	-	0	transcript_id "Ledus.S1G306100.t1"; gene_id "Ledus.S1G306100"
Ledus.S1	AUGUSTUS	exon	25549610	25549617	.	-	.	transcript_id "Ledus.S1G306100.t1"; gene_id "Ledus.S1G306100"
Ledus.S1	AUGUSTUS	start_codon	25549615	25549617	.	-	0	transcript_id "Ledus.S1G306100.t1"; gene_id "Ledus.S1G306100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6643.t1 is derived from g4086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32842316	32843154	.	+	.	Ledus.S1G406400
Ledus.S1	AUGUSTUS	transcript	32842316	32843154	.	+	.	transcript_id "Ledus.S1G406400.t1"; gene_id "Ledus.S1G406400"
Ledus.S1	AUGUSTUS	start_codon	32842316	32842318	.	+	0	transcript_id "Ledus.S1G406400.t1"; gene_id "Ledus.S1G406400"
Ledus.S1	AUGUSTUS	CDS	32842316	32842756	0.89	+	0	transcript_id "Ledus.S1G406400.t1"; gene_id "Ledus.S1G406400"
Ledus.S1	AUGUSTUS	exon	32842316	32842756	.	+	.	transcript_id "Ledus.S1G406400.t1"; gene_id "Ledus.S1G406400"
Ledus.S1	AUGUSTUS	intron	32842757	32842849	.	+	.	transcript_id "Ledus.S1G406400.t1"; gene_id "Ledus.S1G406400"
Ledus.S1	AUGUSTUS	CDS	32842850	32842958	1	+	0	transcript_id "Ledus.S1G406400.t1"; gene_id "Ledus.S1G406400"
Ledus.S1	AUGUSTUS	exon	32842850	32842958	.	+	.	transcript_id "Ledus.S1G406400.t1"; gene_id "Ledus.S1G406400"
Ledus.S1	AUGUSTUS	intron	32842959	32843092	.	+	.	transcript_id "Ledus.S1G406400.t1"; gene_id "Ledus.S1G406400"
Ledus.S1	AUGUSTUS	CDS	32843093	32843154	0.98	+	2	transcript_id "Ledus.S1G406400.t1"; gene_id "Ledus.S1G406400"
Ledus.S1	AUGUSTUS	exon	32843093	32843154	.	+	.	transcript_id "Ledus.S1G406400.t1"; gene_id "Ledus.S1G406400"
Ledus.S1	AUGUSTUS	stop_codon	32843155	32843157	.	+	0	transcript_id "Ledus.S1G406400.t1"; gene_id "Ledus.S1G406400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9211.t1 is derived from g10241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5424502	5426504	.	+	.	Ledus.S3G068800
Ledus.S3	AUGUSTUS	transcript	5424502	5426504	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	start_codon	5424502	5424504	.	+	0	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	CDS	5424502	5424592	0.62	+	0	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	exon	5424502	5424592	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	intron	5424593	5424667	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	CDS	5424668	5424755	0.71	+	2	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	exon	5424668	5424755	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	intron	5424756	5424863	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	CDS	5424864	5425015	0.77	+	1	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	exon	5424864	5425015	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	intron	5425016	5425095	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	CDS	5425096	5425256	1	+	2	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	exon	5425096	5425256	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	intron	5425257	5425398	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	CDS	5425399	5425553	1	+	0	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	exon	5425399	5425553	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	intron	5425554	5425692	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	CDS	5425693	5425868	1	+	1	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	exon	5425693	5425868	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	intron	5425869	5425986	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	CDS	5425987	5426504	1	+	2	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	exon	5425987	5426504	.	+	.	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
Ledus.S3	AUGUSTUS	stop_codon	5426505	5426507	.	+	0	transcript_id "Ledus.S3G068800.t1"; gene_id "Ledus.S3G068800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6295.t1 is derived from g3738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30175815	30176561	.	+	.	Ledus.S1G371600
Ledus.S1	AUGUSTUS	transcript	30175815	30176561	.	+	.	transcript_id "Ledus.S1G371600.t1"; gene_id "Ledus.S1G371600"
Ledus.S1	AUGUSTUS	start_codon	30175815	30175817	.	+	0	transcript_id "Ledus.S1G371600.t1"; gene_id "Ledus.S1G371600"
Ledus.S1	AUGUSTUS	CDS	30175815	30175891	0.74	+	0	transcript_id "Ledus.S1G371600.t1"; gene_id "Ledus.S1G371600"
Ledus.S1	AUGUSTUS	exon	30175815	30175891	.	+	.	transcript_id "Ledus.S1G371600.t1"; gene_id "Ledus.S1G371600"
Ledus.S1	AUGUSTUS	intron	30175892	30176108	.	+	.	transcript_id "Ledus.S1G371600.t1"; gene_id "Ledus.S1G371600"
Ledus.S1	AUGUSTUS	CDS	30176109	30176263	0.4	+	1	transcript_id "Ledus.S1G371600.t1"; gene_id "Ledus.S1G371600"
Ledus.S1	AUGUSTUS	exon	30176109	30176263	.	+	.	transcript_id "Ledus.S1G371600.t1"; gene_id "Ledus.S1G371600"
Ledus.S1	AUGUSTUS	intron	30176264	30176334	.	+	.	transcript_id "Ledus.S1G371600.t1"; gene_id "Ledus.S1G371600"
Ledus.S1	AUGUSTUS	CDS	30176335	30176561	0.98	+	2	transcript_id "Ledus.S1G371600.t1"; gene_id "Ledus.S1G371600"
Ledus.S1	AUGUSTUS	exon	30176335	30176561	.	+	.	transcript_id "Ledus.S1G371600.t1"; gene_id "Ledus.S1G371600"
Ledus.S1	AUGUSTUS	stop_codon	30176562	30176564	.	+	0	transcript_id "Ledus.S1G371600.t1"; gene_id "Ledus.S1G371600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4494.t1 is derived from g1930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17363578	17364696	.	+	.	Ledus.S1G191500
Ledus.S1	AUGUSTUS	transcript	17363578	17364696	.	+	.	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	start_codon	17363578	17363580	.	+	0	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	CDS	17363578	17363715	0.44	+	0	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	exon	17363578	17363715	.	+	.	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	intron	17363716	17363789	.	+	.	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	CDS	17363790	17363975	1	+	0	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	exon	17363790	17363975	.	+	.	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	intron	17363976	17364052	.	+	.	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	CDS	17364053	17364221	1	+	0	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	exon	17364053	17364221	.	+	.	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	intron	17364222	17364292	.	+	.	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	CDS	17364293	17364696	0.99	+	2	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	exon	17364293	17364696	.	+	.	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
Ledus.S1	AUGUSTUS	stop_codon	17364697	17364699	.	+	0	transcript_id "Ledus.S1G191500.t1"; gene_id "Ledus.S1G191500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3878.t1 is derived from g1314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13328805	13331259	.	-	.	Ledus.S1G129900
Ledus.S1	AUGUSTUS	transcript	13328805	13331259	.	-	.	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	stop_codon	13328802	13328804	.	-	0	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	CDS	13328805	13329822	1	-	1	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	exon	13328805	13329822	.	-	.	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	intron	13329823	13330028	.	-	.	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	CDS	13330029	13330096	0.69	-	0	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	exon	13330029	13330096	.	-	.	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	intron	13330097	13330188	.	-	.	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	CDS	13330189	13330266	0.47	-	0	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	exon	13330189	13330266	.	-	.	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	intron	13330267	13330351	.	-	.	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	CDS	13330352	13330483	0.76	-	0	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	exon	13330352	13330483	.	-	.	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	intron	13330484	13330585	.	-	.	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	CDS	13330586	13330858	0.95	-	0	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	exon	13330586	13330858	.	-	.	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	intron	13330859	13330968	.	-	.	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	CDS	13330969	13331259	0.78	-	0	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	exon	13330969	13331259	.	-	.	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
Ledus.S1	AUGUSTUS	start_codon	13331257	13331259	.	-	0	transcript_id "Ledus.S1G129900.t1"; gene_id "Ledus.S1G129900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6729.t1 is derived from g4172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33574565	33576186	.	+	.	Ledus.S1G415000
Ledus.S1	AUGUSTUS	transcript	33574565	33576186	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	start_codon	33574565	33574567	.	+	0	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	CDS	33574565	33574749	0.94	+	0	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	exon	33574565	33574749	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	intron	33574750	33574846	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	CDS	33574847	33574906	0.98	+	1	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	exon	33574847	33574906	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	intron	33574907	33575017	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	CDS	33575018	33575134	0.98	+	1	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	exon	33575018	33575134	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	intron	33575135	33575217	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	CDS	33575218	33575488	1	+	1	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	exon	33575218	33575488	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	intron	33575489	33575565	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	CDS	33575566	33575724	1	+	0	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	exon	33575566	33575724	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	intron	33575725	33575826	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	CDS	33575827	33575978	1	+	0	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	exon	33575827	33575978	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	intron	33575979	33576062	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	CDS	33576063	33576186	0.97	+	1	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	exon	33576063	33576186	.	+	.	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
Ledus.S1	AUGUSTUS	stop_codon	33576187	33576189	.	+	0	transcript_id "Ledus.S1G415000.t1"; gene_id "Ledus.S1G415000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5131.t1 is derived from g2570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21884314	21885215	.	+	.	Ledus.S1G255200
Ledus.S1	AUGUSTUS	transcript	21884314	21885215	.	+	.	transcript_id "Ledus.S1G255200.t1"; gene_id "Ledus.S1G255200"
Ledus.S1	AUGUSTUS	start_codon	21884314	21884316	.	+	0	transcript_id "Ledus.S1G255200.t1"; gene_id "Ledus.S1G255200"
Ledus.S1	AUGUSTUS	CDS	21884314	21884595	0.95	+	0	transcript_id "Ledus.S1G255200.t1"; gene_id "Ledus.S1G255200"
Ledus.S1	AUGUSTUS	exon	21884314	21884595	.	+	.	transcript_id "Ledus.S1G255200.t1"; gene_id "Ledus.S1G255200"
Ledus.S1	AUGUSTUS	intron	21884596	21884684	.	+	.	transcript_id "Ledus.S1G255200.t1"; gene_id "Ledus.S1G255200"
Ledus.S1	AUGUSTUS	CDS	21884685	21885215	1	+	0	transcript_id "Ledus.S1G255200.t1"; gene_id "Ledus.S1G255200"
Ledus.S1	AUGUSTUS	exon	21884685	21885215	.	+	.	transcript_id "Ledus.S1G255200.t1"; gene_id "Ledus.S1G255200"
Ledus.S1	AUGUSTUS	stop_codon	21885216	21885218	.	+	0	transcript_id "Ledus.S1G255200.t1"; gene_id "Ledus.S1G255200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12210.t1 is derived from g5829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10400209	10404577	.	+	.	Ledus.S4G136600
Ledus.S4	AUGUSTUS	transcript	10400209	10404577	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	start_codon	10400209	10400211	.	+	0	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	CDS	10400209	10401001	0.84	+	0	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	exon	10400209	10401001	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	intron	10401002	10401223	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	CDS	10401224	10401571	1	+	2	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	exon	10401224	10401571	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	intron	10401572	10401663	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	CDS	10401664	10401913	0.79	+	2	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	exon	10401664	10401913	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	intron	10401914	10402061	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	CDS	10402062	10402220	0.61	+	1	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	exon	10402062	10402220	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	intron	10402221	10402468	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	CDS	10402469	10403342	0.73	+	1	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	exon	10402469	10403342	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	intron	10403343	10403438	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	CDS	10403439	10403630	1	+	0	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	exon	10403439	10403630	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	intron	10403631	10403752	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	CDS	10403753	10404577	1	+	0	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	exon	10403753	10404577	.	+	.	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	stop_codon	10404578	10404580	.	+	0	transcript_id "Ledus.S4G136600.t1"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	transcript	10400209	10401254	.	+	.	transcript_id "Ledus.S4G136600.t2"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	start_codon	10400209	10400211	.	+	0	transcript_id "Ledus.S4G136600.t2"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	CDS	10400209	10401001	0.87	+	0	transcript_id "Ledus.S4G136600.t2"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	exon	10400209	10401001	.	+	.	transcript_id "Ledus.S4G136600.t2"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	intron	10401002	10401198	.	+	.	transcript_id "Ledus.S4G136600.t2"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	CDS	10401199	10401254	0.85	+	2	transcript_id "Ledus.S4G136600.t2"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	exon	10401199	10401254	.	+	.	transcript_id "Ledus.S4G136600.t2"; gene_id "Ledus.S4G136600"
Ledus.S4	AUGUSTUS	stop_codon	10401255	10401257	.	+	0	transcript_id "Ledus.S4G136600.t2"; gene_id "Ledus.S4G136600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg148.t1 is derived from g7009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	277559	279032	.	-	.	Ledus.S2G003000
Ledus.S2	AUGUSTUS	transcript	277559	279032	.	-	.	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	stop_codon	277556	277558	.	-	0	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	CDS	277559	277961	1	-	1	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	exon	277559	277961	.	-	.	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	intron	277962	278031	.	-	.	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	CDS	278032	278199	1	-	1	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	exon	278032	278199	.	-	.	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	intron	278200	278291	.	-	.	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	CDS	278292	278567	1	-	1	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	exon	278292	278567	.	-	.	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	intron	278568	278643	.	-	.	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	CDS	278644	279032	0.9	-	0	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	exon	278644	279032	.	-	.	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
Ledus.S2	AUGUSTUS	start_codon	279030	279032	.	-	0	transcript_id "Ledus.S2G003000.t1"; gene_id "Ledus.S2G003000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5116.t1 is derived from g2555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21785739	21787118	.	+	.	Ledus.S1G253700
Ledus.S1	AUGUSTUS	transcript	21785739	21787118	.	+	.	transcript_id "Ledus.S1G253700.t1"; gene_id "Ledus.S1G253700"
Ledus.S1	AUGUSTUS	start_codon	21785739	21785741	.	+	0	transcript_id "Ledus.S1G253700.t1"; gene_id "Ledus.S1G253700"
Ledus.S1	AUGUSTUS	CDS	21785739	21787118	0.38	+	0	transcript_id "Ledus.S1G253700.t1"; gene_id "Ledus.S1G253700"
Ledus.S1	AUGUSTUS	exon	21785739	21787118	.	+	.	transcript_id "Ledus.S1G253700.t1"; gene_id "Ledus.S1G253700"
Ledus.S1	AUGUSTUS	stop_codon	21787119	21787121	.	+	0	transcript_id "Ledus.S1G253700.t1"; gene_id "Ledus.S1G253700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1991.t1 is derived from g8854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14090106	14090788	.	-	.	Ledus.S2G187300
Ledus.S2	AUGUSTUS	transcript	14090106	14090788	.	-	.	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	stop_codon	14090103	14090105	.	-	0	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	CDS	14090106	14090204	0.95	-	0	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	exon	14090106	14090204	.	-	.	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	intron	14090205	14090306	.	-	.	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	CDS	14090307	14090348	0.96	-	0	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	exon	14090307	14090348	.	-	.	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	intron	14090349	14090476	.	-	.	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	CDS	14090477	14090563	1	-	0	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	exon	14090477	14090563	.	-	.	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	intron	14090564	14090623	.	-	.	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	CDS	14090624	14090788	0.91	-	0	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	exon	14090624	14090788	.	-	.	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
Ledus.S2	AUGUSTUS	start_codon	14090786	14090788	.	-	0	transcript_id "Ledus.S2G187300.t1"; gene_id "Ledus.S2G187300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11792.t1 is derived from g5411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6808730	6812221	.	+	.	Ledus.S4G094800
Ledus.S4	AUGUSTUS	transcript	6808730	6812221	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	start_codon	6808730	6808732	.	+	0	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6808730	6808827	0.4	+	0	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6808730	6808827	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6808828	6808929	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6808930	6809034	1	+	1	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6808930	6809034	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6809035	6809166	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6809167	6809284	1	+	1	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6809167	6809284	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6809285	6809378	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6809379	6809429	1	+	0	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6809379	6809429	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6809430	6809556	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6809557	6809648	1	+	0	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6809557	6809648	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6809649	6809897	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6809898	6809997	1	+	1	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6809898	6809997	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6809998	6810121	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6810122	6810241	1	+	0	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6810122	6810241	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6810242	6810360	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6810361	6810438	0.95	+	0	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6810361	6810438	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6810439	6810549	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6810550	6810596	0.96	+	0	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6810550	6810596	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6810597	6810708	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6810709	6810764	1	+	1	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6810709	6810764	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6810765	6810896	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6810897	6810937	1	+	2	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6810897	6810937	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6810938	6811049	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6811050	6811158	1	+	0	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6811050	6811158	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6811159	6811345	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6811346	6811508	1	+	2	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6811346	6811508	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6811509	6811632	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6811633	6812221	0.98	+	1	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6811633	6812221	.	+	.	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	stop_codon	6812222	6812224	.	+	0	transcript_id "Ledus.S4G094800.t1"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	transcript	6808730	6809878	.	+	.	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	start_codon	6808730	6808732	.	+	0	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6808730	6808827	0.41	+	0	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6808730	6808827	.	+	.	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6808828	6808929	.	+	.	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6808930	6809034	0.99	+	1	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6808930	6809034	.	+	.	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6809035	6809166	.	+	.	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6809167	6809284	1	+	1	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6809167	6809284	.	+	.	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6809285	6809378	.	+	.	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6809379	6809429	1	+	0	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6809379	6809429	.	+	.	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6809430	6809556	.	+	.	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6809557	6809648	1	+	0	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6809557	6809648	.	+	.	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	intron	6809649	6809856	.	+	.	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	CDS	6809857	6809878	1	+	1	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	exon	6809857	6809878	.	+	.	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
Ledus.S4	AUGUSTUS	stop_codon	6809879	6809881	.	+	0	transcript_id "Ledus.S4G094800.t2"; gene_id "Ledus.S4G094800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11613.t1 is derived from g5231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5525033	5525875	.	+	.	Ledus.S4G076900
Ledus.S4	AUGUSTUS	transcript	5525033	5525875	.	+	.	transcript_id "Ledus.S4G076900.t1"; gene_id "Ledus.S4G076900"
Ledus.S4	AUGUSTUS	start_codon	5525033	5525035	.	+	0	transcript_id "Ledus.S4G076900.t1"; gene_id "Ledus.S4G076900"
Ledus.S4	AUGUSTUS	CDS	5525033	5525875	0.93	+	0	transcript_id "Ledus.S4G076900.t1"; gene_id "Ledus.S4G076900"
Ledus.S4	AUGUSTUS	exon	5525033	5525875	.	+	.	transcript_id "Ledus.S4G076900.t1"; gene_id "Ledus.S4G076900"
Ledus.S4	AUGUSTUS	stop_codon	5525876	5525878	.	+	0	transcript_id "Ledus.S4G076900.t1"; gene_id "Ledus.S4G076900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5871.t1 is derived from g3313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27484544	27491207	.	+	.	Ledus.S1G329200
Ledus.S1	AUGUSTUS	transcript	27484544	27491207	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	start_codon	27484544	27484546	.	+	0	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27484544	27484693	0.93	+	0	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27484544	27484693	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27484694	27484828	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27484829	27484964	0.93	+	0	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27484829	27484964	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27484965	27485047	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27485048	27485544	0.79	+	2	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27485048	27485544	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27485545	27485659	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27485660	27485804	0.89	+	0	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27485660	27485804	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27485805	27485906	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27485907	27486162	1	+	2	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27485907	27486162	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27486163	27486284	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27486285	27486811	0.99	+	1	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27486285	27486811	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27486812	27486888	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27486889	27487031	1	+	2	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27486889	27487031	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27487032	27487592	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27487593	27487785	1	+	0	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27487593	27487785	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27487786	27487934	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27487935	27488169	0.98	+	2	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27487935	27488169	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27488170	27488263	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27488264	27488504	1	+	1	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27488264	27488504	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27488505	27488667	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27488668	27489213	0.92	+	0	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27488668	27489213	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27489214	27489384	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27489385	27489644	0.96	+	0	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27489385	27489644	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27489645	27489737	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27489738	27489812	1	+	1	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27489738	27489812	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27489813	27489901	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27489902	27489985	1	+	1	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27489902	27489985	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27489986	27490247	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27490248	27490391	1	+	1	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27490248	27490391	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27490392	27490580	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27490581	27490668	1	+	1	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27490581	27490668	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27490669	27490769	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27490770	27490852	1	+	0	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27490770	27490852	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27490853	27490944	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27490945	27490999	1	+	1	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27490945	27490999	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27491000	27491144	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27491145	27491207	1	+	0	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27491145	27491207	.	+	.	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	stop_codon	27491208	27491210	.	+	0	transcript_id "Ledus.S1G329200.t1"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	transcript	27484544	27491207	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	start_codon	27484544	27484546	.	+	0	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27484544	27484693	0.91	+	0	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27484544	27484693	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27484694	27484828	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27484829	27484964	0.92	+	0	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27484829	27484964	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27484965	27485047	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27485048	27485544	0.69	+	2	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27485048	27485544	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27485545	27485659	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27485660	27485804	0.89	+	0	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27485660	27485804	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27485805	27485906	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27485907	27486162	1	+	2	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27485907	27486162	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27486163	27486284	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27486285	27486811	0.99	+	1	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27486285	27486811	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27486812	27486888	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27486889	27487031	1	+	2	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27486889	27487031	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27487032	27487577	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27487578	27487785	0.97	+	0	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27487578	27487785	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27487786	27487934	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27487935	27488169	0.96	+	2	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27487935	27488169	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27488170	27488263	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27488264	27488504	1	+	1	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27488264	27488504	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27488505	27488667	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27488668	27489213	0.97	+	0	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27488668	27489213	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27489214	27489384	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27489385	27489644	0.98	+	0	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27489385	27489644	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27489645	27489737	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27489738	27489812	1	+	1	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27489738	27489812	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27489813	27489901	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27489902	27489985	1	+	1	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27489902	27489985	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27489986	27490247	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27490248	27490391	1	+	1	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27490248	27490391	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27490392	27490580	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27490581	27490668	1	+	1	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27490581	27490668	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27490669	27490769	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27490770	27490852	1	+	0	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27490770	27490852	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27490853	27490944	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27490945	27490999	1	+	1	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27490945	27490999	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	intron	27491000	27491144	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	CDS	27491145	27491207	1	+	0	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	exon	27491145	27491207	.	+	.	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
Ledus.S1	AUGUSTUS	stop_codon	27491208	27491210	.	+	0	transcript_id "Ledus.S1G329200.t2"; gene_id "Ledus.S1G329200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7195.t1 is derived from g6726.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2066694	2070371	.	+	.	Ledus.C7G025600
Ledus.C7	AUGUSTUS	transcript	2066694	2070371	.	+	.	transcript_id "Ledus.C7G025600.t1"; gene_id "Ledus.C7G025600"
Ledus.C7	AUGUSTUS	start_codon	2066694	2066696	.	+	0	transcript_id "Ledus.C7G025600.t1"; gene_id "Ledus.C7G025600"
Ledus.C7	AUGUSTUS	CDS	2066694	2070371	0.93	+	0	transcript_id "Ledus.C7G025600.t1"; gene_id "Ledus.C7G025600"
Ledus.C7	AUGUSTUS	exon	2066694	2070371	.	+	.	transcript_id "Ledus.C7G025600.t1"; gene_id "Ledus.C7G025600"
Ledus.C7	AUGUSTUS	stop_codon	2070372	2070374	.	+	0	transcript_id "Ledus.C7G025600.t1"; gene_id "Ledus.C7G025600"
# This transcript jg1090.t2 is derived from g7951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1091.t1 is derived from g7952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7465993	7469474	.	-	.	Ledus.S2G097300
Ledus.S2	AUGUSTUS	transcript	7465993	7469474	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	stop_codon	7465990	7465992	.	-	0	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7465993	7466056	0.76	-	1	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7465993	7466056	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7466057	7466694	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7466695	7467071	1	-	0	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7466695	7467071	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7467072	7467169	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7467170	7467233	1	-	1	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7467170	7467233	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7467234	7467376	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7467377	7467520	1	-	1	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7467377	7467520	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7467521	7467679	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7467680	7467720	1	-	0	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7467680	7467720	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7467721	7467824	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7467825	7467975	0.92	-	1	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7467825	7467975	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7467976	7468083	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7468084	7468157	0.93	-	0	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7468084	7468157	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7468158	7468274	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7468275	7468343	0.94	-	0	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7468275	7468343	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7468344	7468441	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7468442	7468505	1	-	1	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7468442	7468505	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7468506	7468618	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7468619	7468785	1	-	0	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7468619	7468785	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7468786	7468940	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7468941	7469033	1	-	0	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7468941	7469033	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7469034	7469133	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7469134	7469158	1	-	1	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7469134	7469158	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7469159	7469274	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7469275	7469474	0.88	-	0	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7469275	7469474	.	-	.	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	start_codon	7469472	7469474	.	-	0	transcript_id "Ledus.S2G097300.t1"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	transcript	7465993	7469474	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	stop_codon	7465990	7465992	.	-	0	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7465993	7466056	0.67	-	1	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7465993	7466056	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7466057	7466694	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7466695	7467071	1	-	0	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7466695	7467071	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7467072	7467169	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7467170	7467233	1	-	1	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7467170	7467233	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7467234	7467376	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7467377	7467520	1	-	1	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7467377	7467520	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7467521	7467679	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7467680	7467720	0.99	-	0	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7467680	7467720	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7467721	7467824	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7467825	7467975	0.89	-	1	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7467825	7467975	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7467976	7468083	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7468084	7468157	0.94	-	0	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7468084	7468157	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7468158	7468274	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7468275	7468343	0.92	-	0	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7468275	7468343	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7468344	7468441	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7468442	7468505	1	-	1	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7468442	7468505	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7468506	7468618	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7468619	7468682	0.44	-	2	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7468619	7468682	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7468683	7468762	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7468763	7468790	0.55	-	0	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7468763	7468790	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7468791	7468940	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7468941	7469033	0.99	-	0	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7468941	7469033	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7469034	7469133	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7469134	7469158	1	-	1	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7469134	7469158	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	intron	7469159	7469274	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	CDS	7469275	7469474	0.84	-	0	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	exon	7469275	7469474	.	-	.	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
Ledus.S2	AUGUSTUS	start_codon	7469472	7469474	.	-	0	transcript_id "Ledus.S2G097300.t2"; gene_id "Ledus.S2G097300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1247.t1 is derived from g8108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8857220	8858429	.	+	.	Ledus.S2G112900
Ledus.S2	AUGUSTUS	transcript	8857220	8858429	.	+	.	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	start_codon	8857220	8857222	.	+	0	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	CDS	8857220	8857237	0.78	+	0	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	exon	8857220	8857237	.	+	.	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	intron	8857238	8857317	.	+	.	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	CDS	8857318	8857564	0.79	+	0	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	exon	8857318	8857564	.	+	.	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	intron	8857565	8857641	.	+	.	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	CDS	8857642	8858046	1	+	2	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	exon	8857642	8858046	.	+	.	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	intron	8858047	8858118	.	+	.	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	CDS	8858119	8858429	1	+	2	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	exon	8858119	8858429	.	+	.	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
Ledus.S2	AUGUSTUS	stop_codon	8858430	8858432	.	+	0	transcript_id "Ledus.S2G112900.t1"; gene_id "Ledus.S2G112900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3348.t1 is derived from g783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7643869	7644294	.	-	.	Ledus.S1G076900
Ledus.S1	AUGUSTUS	transcript	7643869	7644294	.	-	.	transcript_id "Ledus.S1G076900.t1"; gene_id "Ledus.S1G076900"
Ledus.S1	AUGUSTUS	stop_codon	7643866	7643868	.	-	0	transcript_id "Ledus.S1G076900.t1"; gene_id "Ledus.S1G076900"
Ledus.S1	AUGUSTUS	CDS	7643869	7644294	0.88	-	0	transcript_id "Ledus.S1G076900.t1"; gene_id "Ledus.S1G076900"
Ledus.S1	AUGUSTUS	exon	7643869	7644294	.	-	.	transcript_id "Ledus.S1G076900.t1"; gene_id "Ledus.S1G076900"
Ledus.S1	AUGUSTUS	start_codon	7644292	7644294	.	-	0	transcript_id "Ledus.S1G076900.t1"; gene_id "Ledus.S1G076900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg491.t1 is derived from g7352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2859508	2859924	.	-	.	Ledus.S2G037300
Ledus.S2	AUGUSTUS	transcript	2859508	2859924	.	-	.	transcript_id "Ledus.S2G037300.t1"; gene_id "Ledus.S2G037300"
Ledus.S2	AUGUSTUS	stop_codon	2859505	2859507	.	-	0	transcript_id "Ledus.S2G037300.t1"; gene_id "Ledus.S2G037300"
Ledus.S2	AUGUSTUS	CDS	2859508	2859924	0.83	-	0	transcript_id "Ledus.S2G037300.t1"; gene_id "Ledus.S2G037300"
Ledus.S2	AUGUSTUS	exon	2859508	2859924	.	-	.	transcript_id "Ledus.S2G037300.t1"; gene_id "Ledus.S2G037300"
Ledus.S2	AUGUSTUS	start_codon	2859922	2859924	.	-	0	transcript_id "Ledus.S2G037300.t1"; gene_id "Ledus.S2G037300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8749.t1 is derived from g9779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1806974	1807273	.	+	.	Ledus.S3G022600
Ledus.S3	AUGUSTUS	transcript	1806974	1807273	.	+	.	transcript_id "Ledus.S3G022600.t1"; gene_id "Ledus.S3G022600"
Ledus.S3	AUGUSTUS	start_codon	1806974	1806976	.	+	0	transcript_id "Ledus.S3G022600.t1"; gene_id "Ledus.S3G022600"
Ledus.S3	AUGUSTUS	CDS	1806974	1807273	0.61	+	0	transcript_id "Ledus.S3G022600.t1"; gene_id "Ledus.S3G022600"
Ledus.S3	AUGUSTUS	exon	1806974	1807273	.	+	.	transcript_id "Ledus.S3G022600.t1"; gene_id "Ledus.S3G022600"
Ledus.S3	AUGUSTUS	stop_codon	1807274	1807276	.	+	0	transcript_id "Ledus.S3G022600.t1"; gene_id "Ledus.S3G022600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1994.t1 is derived from g8857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14110935	14112205	.	-	.	Ledus.S2G187600
Ledus.S2	AUGUSTUS	transcript	14110935	14112205	.	-	.	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	stop_codon	14110932	14110934	.	-	0	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	CDS	14110935	14110993	0.52	-	2	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	exon	14110935	14110993	.	-	.	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	intron	14110994	14111117	.	-	.	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	CDS	14111118	14111309	1	-	2	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	exon	14111118	14111309	.	-	.	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	intron	14111310	14111417	.	-	.	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	CDS	14111418	14111494	1	-	1	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	exon	14111418	14111494	.	-	.	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	intron	14111495	14112191	.	-	.	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	CDS	14112192	14112205	1	-	0	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	exon	14112192	14112205	.	-	.	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
Ledus.S2	AUGUSTUS	start_codon	14112203	14112205	.	-	0	transcript_id "Ledus.S2G187600.t1"; gene_id "Ledus.S2G187600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8741.t1 is derived from g9771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1720650	1722345	.	-	.	Ledus.S3G021800
Ledus.S3	AUGUSTUS	transcript	1720650	1722345	.	-	.	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	stop_codon	1720647	1720649	.	-	0	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	CDS	1720650	1720732	0.38	-	2	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	exon	1720650	1720732	.	-	.	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	intron	1720733	1720819	.	-	.	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	CDS	1720820	1720919	0.86	-	0	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	exon	1720820	1720919	.	-	.	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	intron	1720920	1721009	.	-	.	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	CDS	1721010	1721960	1	-	0	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	exon	1721010	1721960	.	-	.	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	intron	1721961	1722043	.	-	.	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	CDS	1722044	1722109	1	-	0	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	exon	1722044	1722109	.	-	.	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	intron	1722110	1722196	.	-	.	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	CDS	1722197	1722246	1	-	2	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	exon	1722197	1722246	.	-	.	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	intron	1722247	1722341	.	-	.	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	CDS	1722342	1722345	1	-	0	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	exon	1722342	1722345	.	-	.	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
Ledus.S3	AUGUSTUS	start_codon	1722343	1722345	.	-	0	transcript_id "Ledus.S3G021800.t1"; gene_id "Ledus.S3G021800"
# This transcript jg3625.t2 is derived from g1061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3626.t1 is derived from g1062.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10261676	10268214	.	+	.	Ledus.S1G104700
Ledus.S1	AUGUSTUS	transcript	10261676	10268214	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	start_codon	10261676	10261678	.	+	0	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10261676	10261859	0.86	+	0	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10261676	10261859	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10261860	10261998	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10261999	10262099	1	+	2	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10261999	10262099	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10262100	10262178	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10262179	10262392	1	+	0	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10262179	10262392	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10262393	10262524	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10262525	10262618	1	+	2	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10262525	10262618	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10262619	10262689	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10262690	10263020	0.99	+	1	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10262690	10263020	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10263021	10263139	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10263140	10263245	1	+	0	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10263140	10263245	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10263246	10263335	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10263336	10263463	0.97	+	2	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10263336	10263463	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10263464	10263613	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10263614	10263805	0.86	+	0	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10263614	10263805	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10263806	10263977	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10263978	10264189	1	+	0	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10263978	10264189	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10264190	10264284	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10264285	10264428	1	+	1	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10264285	10264428	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10264429	10264581	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10264582	10264670	1	+	1	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10264582	10264670	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10264671	10264869	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10264870	10264924	0.89	+	2	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10264870	10264924	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10264925	10265124	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10265125	10265207	0.97	+	1	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10265125	10265207	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10265208	10265408	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10265409	10265464	0.97	+	2	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10265409	10265464	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10265465	10265580	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10265581	10265744	0.95	+	0	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10265581	10265744	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10265745	10265913	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10265914	10266098	0.93	+	1	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10265914	10266098	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10266099	10266211	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10266212	10266284	0.9	+	2	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10266212	10266284	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10266285	10266396	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10266397	10266469	0.88	+	1	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10266397	10266469	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10266470	10266597	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10266598	10266699	0.77	+	0	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10266598	10266699	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10266700	10266812	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10266813	10266903	0.74	+	0	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10266813	10266903	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10266904	10267029	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10267030	10267347	0.64	+	2	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10267030	10267347	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10267348	10267420	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10267421	10267683	0.95	+	2	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10267421	10267683	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10267684	10267762	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10267763	10267909	0.66	+	0	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10267763	10267909	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	intron	10267910	10268019	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	CDS	10268020	10268214	0.99	+	0	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	exon	10268020	10268214	.	+	.	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
Ledus.S1	AUGUSTUS	stop_codon	10268215	10268217	.	+	0	transcript_id "Ledus.S1G104700.t1"; gene_id "Ledus.S1G104700"
# This transcript jg11056.t2 is derived from g4674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11057.t1 is derived from g4675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1510804	1511980	.	+	.	Ledus.S4G021300
Ledus.S4	AUGUSTUS	transcript	1510804	1511980	.	+	.	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	start_codon	1510804	1510806	.	+	0	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	CDS	1510804	1510897	1	+	0	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	exon	1510804	1510897	.	+	.	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	intron	1510898	1511053	.	+	.	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	CDS	1511054	1511171	1	+	2	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	exon	1511054	1511171	.	+	.	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	intron	1511172	1511266	.	+	.	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	CDS	1511267	1511345	1	+	1	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	exon	1511267	1511345	.	+	.	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	intron	1511346	1511427	.	+	.	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	CDS	1511428	1511486	1	+	0	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	exon	1511428	1511486	.	+	.	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	intron	1511487	1511592	.	+	.	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	CDS	1511593	1511980	1	+	1	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	exon	1511593	1511980	.	+	.	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
Ledus.S4	AUGUSTUS	stop_codon	1511981	1511983	.	+	0	transcript_id "Ledus.S4G021300.t1"; gene_id "Ledus.S4G021300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2540.t1 is derived from g9403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18778365	18778601	.	+	.	Ledus.S2G242200
Ledus.S2	AUGUSTUS	transcript	18778365	18778601	.	+	.	transcript_id "Ledus.S2G242200.t1"; gene_id "Ledus.S2G242200"
Ledus.S2	AUGUSTUS	start_codon	18778365	18778367	.	+	0	transcript_id "Ledus.S2G242200.t1"; gene_id "Ledus.S2G242200"
Ledus.S2	AUGUSTUS	CDS	18778365	18778601	0.5	+	0	transcript_id "Ledus.S2G242200.t1"; gene_id "Ledus.S2G242200"
Ledus.S2	AUGUSTUS	exon	18778365	18778601	.	+	.	transcript_id "Ledus.S2G242200.t1"; gene_id "Ledus.S2G242200"
Ledus.S2	AUGUSTUS	stop_codon	18778602	18778604	.	+	0	transcript_id "Ledus.S2G242200.t1"; gene_id "Ledus.S2G242200"
# This transcript jg3050.t2 is derived from g485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3051.t1 is derived from g486.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5524146	5526507	.	+	.	Ledus.S1G047200
Ledus.S1	AUGUSTUS	transcript	5524146	5526507	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	start_codon	5524146	5524148	.	+	0	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5524146	5524230	0.99	+	0	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5524146	5524230	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5524231	5524381	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5524382	5524430	1	+	2	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5524382	5524430	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5524431	5524580	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5524581	5524704	1	+	1	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5524581	5524704	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5524705	5524832	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5524833	5524862	1	+	0	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5524833	5524862	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5524863	5524964	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5524965	5525041	0.88	+	0	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5524965	5525041	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5525042	5525160	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5525161	5525304	0.99	+	1	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5525161	5525304	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5525305	5525389	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5525390	5525504	1	+	1	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5525390	5525504	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5525505	5525624	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5525625	5525668	1	+	0	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5525625	5525668	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5525669	5525783	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5525784	5526106	0.94	+	1	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5525784	5526106	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5526107	5526321	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5526322	5526330	0.93	+	2	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5526322	5526330	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5526331	5526430	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5526431	5526507	0.92	+	2	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5526431	5526507	.	+	.	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	stop_codon	5526508	5526510	.	+	0	transcript_id "Ledus.S1G047200.t1"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	transcript	5524146	5526455	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	start_codon	5524146	5524148	.	+	0	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5524146	5524230	0.98	+	0	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5524146	5524230	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5524231	5524381	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5524382	5524430	1	+	2	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5524382	5524430	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5524431	5524580	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5524581	5524704	1	+	1	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5524581	5524704	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5524705	5524832	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5524833	5524862	0.97	+	0	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5524833	5524862	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5524863	5524964	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5524965	5525041	0.85	+	0	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5524965	5525041	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5525042	5525160	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5525161	5525304	0.97	+	1	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5525161	5525304	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5525305	5525389	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5525390	5525504	1	+	1	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5525390	5525504	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5525505	5525624	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5525625	5525668	1	+	0	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5525625	5525668	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5525669	5525783	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5525784	5526106	0.86	+	1	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5525784	5526106	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5526107	5526220	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5526221	5526326	0.51	+	2	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5526221	5526326	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	intron	5526327	5526430	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	CDS	5526431	5526455	0.49	+	1	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	exon	5526431	5526455	.	+	.	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
Ledus.S1	AUGUSTUS	stop_codon	5526456	5526458	.	+	0	transcript_id "Ledus.S1G047200.t2"; gene_id "Ledus.S1G047200"
# This transcript jg11104.t2 is derived from g4722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11104.t3 is derived from g4722.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11105.t1 is derived from g4723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1853931	1854970	.	+	.	Ledus.S4G026100
Ledus.S4	AUGUSTUS	transcript	1853931	1854970	.	+	.	transcript_id "Ledus.S4G026100.t1"; gene_id "Ledus.S4G026100"
Ledus.S4	AUGUSTUS	start_codon	1853931	1853933	.	+	0	transcript_id "Ledus.S4G026100.t1"; gene_id "Ledus.S4G026100"
Ledus.S4	AUGUSTUS	CDS	1853931	1854040	0.6	+	0	transcript_id "Ledus.S4G026100.t1"; gene_id "Ledus.S4G026100"
Ledus.S4	AUGUSTUS	exon	1853931	1854040	.	+	.	transcript_id "Ledus.S4G026100.t1"; gene_id "Ledus.S4G026100"
Ledus.S4	AUGUSTUS	intron	1854041	1854339	.	+	.	transcript_id "Ledus.S4G026100.t1"; gene_id "Ledus.S4G026100"
Ledus.S4	AUGUSTUS	CDS	1854340	1854970	0.22	+	1	transcript_id "Ledus.S4G026100.t1"; gene_id "Ledus.S4G026100"
Ledus.S4	AUGUSTUS	exon	1854340	1854970	.	+	.	transcript_id "Ledus.S4G026100.t1"; gene_id "Ledus.S4G026100"
Ledus.S4	AUGUSTUS	stop_codon	1854971	1854973	.	+	0	transcript_id "Ledus.S4G026100.t1"; gene_id "Ledus.S4G026100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5617.t1 is derived from g3056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25411146	25412360	.	+	.	Ledus.S1G303800
Ledus.S1	AUGUSTUS	transcript	25411146	25412360	.	+	.	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	start_codon	25411146	25411148	.	+	0	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	CDS	25411146	25411313	0.98	+	0	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	exon	25411146	25411313	.	+	.	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	intron	25411314	25411418	.	+	.	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	CDS	25411419	25411541	1	+	0	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	exon	25411419	25411541	.	+	.	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	intron	25411542	25411620	.	+	.	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	CDS	25411621	25411703	1	+	0	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	exon	25411621	25411703	.	+	.	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	intron	25411704	25411886	.	+	.	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	CDS	25411887	25411996	1	+	1	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	exon	25411887	25411996	.	+	.	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	intron	25411997	25412082	.	+	.	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	CDS	25412083	25412158	1	+	2	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	exon	25412083	25412158	.	+	.	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	intron	25412159	25412263	.	+	.	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	CDS	25412264	25412360	0.99	+	1	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	exon	25412264	25412360	.	+	.	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
Ledus.S1	AUGUSTUS	stop_codon	25412361	25412363	.	+	0	transcript_id "Ledus.S1G303800.t1"; gene_id "Ledus.S1G303800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3954.t1 is derived from g1390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13708080	13708922	.	+	.	Ledus.S1G137500
Ledus.S1	AUGUSTUS	transcript	13708080	13708922	.	+	.	transcript_id "Ledus.S1G137500.t1"; gene_id "Ledus.S1G137500"
Ledus.S1	AUGUSTUS	start_codon	13708080	13708082	.	+	0	transcript_id "Ledus.S1G137500.t1"; gene_id "Ledus.S1G137500"
Ledus.S1	AUGUSTUS	CDS	13708080	13708226	0.97	+	0	transcript_id "Ledus.S1G137500.t1"; gene_id "Ledus.S1G137500"
Ledus.S1	AUGUSTUS	exon	13708080	13708226	.	+	.	transcript_id "Ledus.S1G137500.t1"; gene_id "Ledus.S1G137500"
Ledus.S1	AUGUSTUS	intron	13708227	13708315	.	+	.	transcript_id "Ledus.S1G137500.t1"; gene_id "Ledus.S1G137500"
Ledus.S1	AUGUSTUS	CDS	13708316	13708364	1	+	0	transcript_id "Ledus.S1G137500.t1"; gene_id "Ledus.S1G137500"
Ledus.S1	AUGUSTUS	exon	13708316	13708364	.	+	.	transcript_id "Ledus.S1G137500.t1"; gene_id "Ledus.S1G137500"
Ledus.S1	AUGUSTUS	intron	13708365	13708446	.	+	.	transcript_id "Ledus.S1G137500.t1"; gene_id "Ledus.S1G137500"
Ledus.S1	AUGUSTUS	CDS	13708447	13708922	1	+	2	transcript_id "Ledus.S1G137500.t1"; gene_id "Ledus.S1G137500"
Ledus.S1	AUGUSTUS	exon	13708447	13708922	.	+	.	transcript_id "Ledus.S1G137500.t1"; gene_id "Ledus.S1G137500"
Ledus.S1	AUGUSTUS	stop_codon	13708923	13708925	.	+	0	transcript_id "Ledus.S1G137500.t1"; gene_id "Ledus.S1G137500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6433.t1 is derived from g3876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31225688	31229758	.	+	.	Ledus.S1G385400
Ledus.S1	AUGUSTUS	transcript	31225688	31229758	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	start_codon	31225688	31225690	.	+	0	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31225688	31225702	0.75	+	0	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31225688	31225702	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31225703	31225891	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31225892	31226119	0.89	+	0	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31225892	31226119	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31226120	31226269	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31226270	31226683	1	+	0	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31226270	31226683	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31226684	31226868	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31226869	31227052	1	+	0	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31226869	31227052	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31227053	31227143	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31227144	31227281	1	+	2	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31227144	31227281	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31227282	31227424	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31227425	31227595	1	+	2	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31227425	31227595	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31227596	31227692	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31227693	31227796	1	+	2	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31227693	31227796	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31227797	31227921	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31227922	31227989	1	+	0	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31227922	31227989	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31227990	31228081	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31228082	31228251	1	+	1	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31228082	31228251	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31228252	31228348	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31228349	31228418	1	+	2	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31228349	31228418	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31228419	31228513	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31228514	31228668	1	+	1	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31228514	31228668	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31228669	31228820	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31228821	31228923	1	+	2	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31228821	31228923	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31228924	31229018	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31229019	31229106	1	+	1	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31229019	31229106	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31229107	31229213	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31229214	31229357	1	+	0	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31229214	31229357	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	intron	31229358	31229467	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	CDS	31229468	31229758	1	+	0	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	exon	31229468	31229758	.	+	.	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
Ledus.S1	AUGUSTUS	stop_codon	31229759	31229761	.	+	0	transcript_id "Ledus.S1G385400.t1"; gene_id "Ledus.S1G385400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2548.t1 is derived from g9411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18877102	18877311	.	+	.	Ledus.S2G243000
Ledus.S2	AUGUSTUS	transcript	18877102	18877311	.	+	.	transcript_id "Ledus.S2G243000.t1"; gene_id "Ledus.S2G243000"
Ledus.S2	AUGUSTUS	start_codon	18877102	18877104	.	+	0	transcript_id "Ledus.S2G243000.t1"; gene_id "Ledus.S2G243000"
Ledus.S2	AUGUSTUS	CDS	18877102	18877311	1	+	0	transcript_id "Ledus.S2G243000.t1"; gene_id "Ledus.S2G243000"
Ledus.S2	AUGUSTUS	exon	18877102	18877311	.	+	.	transcript_id "Ledus.S2G243000.t1"; gene_id "Ledus.S2G243000"
Ledus.S2	AUGUSTUS	stop_codon	18877312	18877314	.	+	0	transcript_id "Ledus.S2G243000.t1"; gene_id "Ledus.S2G243000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2136.t1 is derived from g8999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15039705	15040007	.	+	.	Ledus.S2G201800
Ledus.S2	AUGUSTUS	transcript	15039705	15040007	.	+	.	transcript_id "Ledus.S2G201800.t1"; gene_id "Ledus.S2G201800"
Ledus.S2	AUGUSTUS	start_codon	15039705	15039707	.	+	0	transcript_id "Ledus.S2G201800.t1"; gene_id "Ledus.S2G201800"
Ledus.S2	AUGUSTUS	CDS	15039705	15040007	0.89	+	0	transcript_id "Ledus.S2G201800.t1"; gene_id "Ledus.S2G201800"
Ledus.S2	AUGUSTUS	exon	15039705	15040007	.	+	.	transcript_id "Ledus.S2G201800.t1"; gene_id "Ledus.S2G201800"
Ledus.S2	AUGUSTUS	stop_codon	15040008	15040010	.	+	0	transcript_id "Ledus.S2G201800.t1"; gene_id "Ledus.S2G201800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1906.t1 is derived from g8769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13304539	13305224	.	-	.	Ledus.S2G178800
Ledus.S2	AUGUSTUS	transcript	13304539	13305224	.	-	.	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	stop_codon	13304536	13304538	.	-	0	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	CDS	13304539	13304542	1	-	1	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	exon	13304539	13304542	.	-	.	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	intron	13304543	13304709	.	-	.	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	CDS	13304710	13304761	1	-	2	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	exon	13304710	13304761	.	-	.	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	intron	13304762	13304841	.	-	.	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	CDS	13304842	13304869	1	-	0	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	exon	13304842	13304869	.	-	.	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	intron	13304870	13304994	.	-	.	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	CDS	13304995	13305142	0.63	-	1	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	exon	13304995	13305142	.	-	.	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	intron	13305143	13305216	.	-	.	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	CDS	13305217	13305224	1	-	0	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	exon	13305217	13305224	.	-	.	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
Ledus.S2	AUGUSTUS	start_codon	13305222	13305224	.	-	0	transcript_id "Ledus.S2G178800.t1"; gene_id "Ledus.S2G178800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11751.t1 is derived from g5370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6560830	6561555	.	+	.	Ledus.S4G090700
Ledus.S4	AUGUSTUS	transcript	6560830	6561555	.	+	.	transcript_id "Ledus.S4G090700.t1"; gene_id "Ledus.S4G090700"
Ledus.S4	AUGUSTUS	start_codon	6560830	6560832	.	+	0	transcript_id "Ledus.S4G090700.t1"; gene_id "Ledus.S4G090700"
Ledus.S4	AUGUSTUS	CDS	6560830	6561172	0.45	+	0	transcript_id "Ledus.S4G090700.t1"; gene_id "Ledus.S4G090700"
Ledus.S4	AUGUSTUS	exon	6560830	6561172	.	+	.	transcript_id "Ledus.S4G090700.t1"; gene_id "Ledus.S4G090700"
Ledus.S4	AUGUSTUS	intron	6561173	6561256	.	+	.	transcript_id "Ledus.S4G090700.t1"; gene_id "Ledus.S4G090700"
Ledus.S4	AUGUSTUS	CDS	6561257	6561304	1	+	2	transcript_id "Ledus.S4G090700.t1"; gene_id "Ledus.S4G090700"
Ledus.S4	AUGUSTUS	exon	6561257	6561304	.	+	.	transcript_id "Ledus.S4G090700.t1"; gene_id "Ledus.S4G090700"
Ledus.S4	AUGUSTUS	intron	6561305	6561382	.	+	.	transcript_id "Ledus.S4G090700.t1"; gene_id "Ledus.S4G090700"
Ledus.S4	AUGUSTUS	CDS	6561383	6561555	0.94	+	2	transcript_id "Ledus.S4G090700.t1"; gene_id "Ledus.S4G090700"
Ledus.S4	AUGUSTUS	exon	6561383	6561555	.	+	.	transcript_id "Ledus.S4G090700.t1"; gene_id "Ledus.S4G090700"
Ledus.S4	AUGUSTUS	stop_codon	6561556	6561558	.	+	0	transcript_id "Ledus.S4G090700.t1"; gene_id "Ledus.S4G090700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8154.t1 is derived from g12825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9433111	9434225	.	-	.	Ledus.S5G093200
Ledus.S5	AUGUSTUS	transcript	9433111	9434225	.	-	.	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	stop_codon	9433108	9433110	.	-	0	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	CDS	9433111	9433271	1	-	2	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	exon	9433111	9433271	.	-	.	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	intron	9433272	9433365	.	-	.	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	CDS	9433366	9433452	1	-	2	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	exon	9433366	9433452	.	-	.	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	intron	9433453	9433640	.	-	.	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	CDS	9433641	9433654	0.98	-	1	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	exon	9433641	9433654	.	-	.	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	intron	9433655	9433818	.	-	.	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	CDS	9433819	9433866	0.98	-	1	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	exon	9433819	9433866	.	-	.	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	intron	9433867	9433956	.	-	.	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	CDS	9433957	9434225	0.48	-	0	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	exon	9433957	9434225	.	-	.	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
Ledus.S5	AUGUSTUS	start_codon	9434223	9434225	.	-	0	transcript_id "Ledus.S5G093200.t1"; gene_id "Ledus.S5G093200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9440.t1 is derived from g10470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6749730	6758712	.	-	.	Ledus.S3G091700
Ledus.S3	AUGUSTUS	transcript	6749730	6758712	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	stop_codon	6749727	6749729	.	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6749730	6749805	0.47	-	1	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6749730	6749805	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6749806	6749948	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6749949	6749965	0.44	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6749949	6749965	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6749966	6750196	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6750197	6750253	0.34	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6750197	6750253	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6750254	6750489	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6750490	6750574	0.59	-	1	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6750490	6750574	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6750575	6750656	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6750657	6750734	0.85	-	1	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6750657	6750734	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6750735	6751062	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6751063	6751265	0.73	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6751063	6751265	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6751266	6751364	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6751365	6751569	1	-	1	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6751365	6751569	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6751570	6751780	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6751781	6751848	0.98	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6751781	6751848	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6751849	6751965	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6751966	6752082	0.94	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6751966	6752082	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6752083	6752235	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6752236	6752391	1	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6752236	6752391	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6752392	6752503	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6752504	6752655	1	-	2	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6752504	6752655	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6752656	6752859	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6752860	6753007	1	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6752860	6753007	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6753008	6753172	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6753173	6753451	0.99	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6753173	6753451	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6753452	6753562	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6753563	6753766	0.78	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6753563	6753766	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6753767	6753980	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6753981	6754079	1	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6753981	6754079	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6754080	6754229	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6754230	6754421	1	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6754230	6754421	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6754422	6754517	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6754518	6754752	0.99	-	1	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6754518	6754752	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6754753	6754908	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6754909	6755002	1	-	2	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6754909	6755002	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6755003	6755100	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6755101	6755296	1	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6755101	6755296	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6755297	6755421	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6755422	6755610	0.99	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6755422	6755610	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6755611	6755720	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6755721	6755861	0.98	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6755721	6755861	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6755862	6756008	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6756009	6756150	1	-	1	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6756009	6756150	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6756151	6756237	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6756238	6756386	1	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6756238	6756386	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6756387	6756547	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6756548	6756760	1	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6756548	6756760	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6756761	6756856	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6756857	6756956	1	-	1	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6756857	6756956	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6756957	6757036	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6757037	6757149	1	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6757037	6757149	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6757150	6757237	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6757238	6757437	1	-	2	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6757238	6757437	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6757438	6757580	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6757581	6757740	1	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6757581	6757740	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6757741	6757966	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6757967	6758116	1	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6757967	6758116	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6758117	6758223	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6758224	6758356	1	-	1	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6758224	6758356	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	intron	6758357	6758593	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	CDS	6758594	6758712	0.93	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	exon	6758594	6758712	.	-	.	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
Ledus.S3	AUGUSTUS	start_codon	6758710	6758712	.	-	0	transcript_id "Ledus.S3G091700.t1"; gene_id "Ledus.S3G091700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9758.t1 is derived from g10788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9627110	9629242	.	-	.	Ledus.S3G123500
Ledus.S3	AUGUSTUS	transcript	9627110	9629242	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	stop_codon	9627107	9627109	.	-	0	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	CDS	9627110	9627169	0.93	-	0	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	exon	9627110	9627169	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	intron	9627170	9627264	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	CDS	9627265	9627364	1	-	1	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	exon	9627265	9627364	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	intron	9627365	9627448	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	CDS	9627449	9627547	0.86	-	1	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	exon	9627449	9627547	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	intron	9627548	9627657	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	CDS	9627658	9627722	0.89	-	0	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	exon	9627658	9627722	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	intron	9627723	9627812	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	CDS	9627813	9627881	1	-	0	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	exon	9627813	9627881	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	intron	9627882	9628072	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	CDS	9628073	9628178	1	-	1	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	exon	9628073	9628178	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	intron	9628179	9628384	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	CDS	9628385	9628482	1	-	0	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	exon	9628385	9628482	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	intron	9628483	9628571	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	CDS	9628572	9628703	1	-	0	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	exon	9628572	9628703	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	intron	9628704	9628845	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	CDS	9628846	9628946	1	-	2	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	exon	9628846	9628946	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	intron	9628947	9629103	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	CDS	9629104	9629242	0.41	-	0	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	exon	9629104	9629242	.	-	.	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
Ledus.S3	AUGUSTUS	start_codon	9629240	9629242	.	-	0	transcript_id "Ledus.S3G123500.t1"; gene_id "Ledus.S3G123500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6623.t1 is derived from g4066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32762820	32764135	.	+	.	Ledus.S1G404400
Ledus.S1	AUGUSTUS	transcript	32762820	32764135	.	+	.	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	start_codon	32762820	32762822	.	+	0	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	CDS	32762820	32763171	0.99	+	0	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	exon	32762820	32763171	.	+	.	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	intron	32763172	32763493	.	+	.	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	CDS	32763494	32763627	0.66	+	2	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	exon	32763494	32763627	.	+	.	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	intron	32763628	32763691	.	+	.	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	CDS	32763692	32763710	0.87	+	0	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	exon	32763692	32763710	.	+	.	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	intron	32763711	32764010	.	+	.	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	CDS	32764011	32764135	0.99	+	2	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	exon	32764011	32764135	.	+	.	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
Ledus.S1	AUGUSTUS	stop_codon	32764136	32764138	.	+	0	transcript_id "Ledus.S1G404400.t1"; gene_id "Ledus.S1G404400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10467.t1 is derived from g11497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15453778	15454035	.	+	.	Ledus.S3G194400
Ledus.S3	AUGUSTUS	transcript	15453778	15454035	.	+	.	transcript_id "Ledus.S3G194400.t1"; gene_id "Ledus.S3G194400"
Ledus.S3	AUGUSTUS	start_codon	15453778	15453780	.	+	0	transcript_id "Ledus.S3G194400.t1"; gene_id "Ledus.S3G194400"
Ledus.S3	AUGUSTUS	CDS	15453778	15454035	0.64	+	0	transcript_id "Ledus.S3G194400.t1"; gene_id "Ledus.S3G194400"
Ledus.S3	AUGUSTUS	exon	15453778	15454035	.	+	.	transcript_id "Ledus.S3G194400.t1"; gene_id "Ledus.S3G194400"
Ledus.S3	AUGUSTUS	stop_codon	15454036	15454038	.	+	0	transcript_id "Ledus.S3G194400.t1"; gene_id "Ledus.S3G194400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4359.t1 is derived from g1795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16569076	16569534	.	+	.	Ledus.S1G178000
Ledus.S1	AUGUSTUS	transcript	16569076	16569534	.	+	.	transcript_id "Ledus.S1G178000.t1"; gene_id "Ledus.S1G178000"
Ledus.S1	AUGUSTUS	start_codon	16569076	16569078	.	+	0	transcript_id "Ledus.S1G178000.t1"; gene_id "Ledus.S1G178000"
Ledus.S1	AUGUSTUS	CDS	16569076	16569534	0.41	+	0	transcript_id "Ledus.S1G178000.t1"; gene_id "Ledus.S1G178000"
Ledus.S1	AUGUSTUS	exon	16569076	16569534	.	+	.	transcript_id "Ledus.S1G178000.t1"; gene_id "Ledus.S1G178000"
Ledus.S1	AUGUSTUS	stop_codon	16569535	16569537	.	+	0	transcript_id "Ledus.S1G178000.t1"; gene_id "Ledus.S1G178000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8813.t1 is derived from g9843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2105004	2109098	.	-	.	Ledus.S3G029000
Ledus.S3	AUGUSTUS	transcript	2105004	2109098	.	-	.	transcript_id "Ledus.S3G029000.t1"; gene_id "Ledus.S3G029000"
Ledus.S3	AUGUSTUS	stop_codon	2105001	2105003	.	-	0	transcript_id "Ledus.S3G029000.t1"; gene_id "Ledus.S3G029000"
Ledus.S3	AUGUSTUS	CDS	2105004	2109098	0.98	-	0	transcript_id "Ledus.S3G029000.t1"; gene_id "Ledus.S3G029000"
Ledus.S3	AUGUSTUS	exon	2105004	2109098	.	-	.	transcript_id "Ledus.S3G029000.t1"; gene_id "Ledus.S3G029000"
Ledus.S3	AUGUSTUS	start_codon	2109096	2109098	.	-	0	transcript_id "Ledus.S3G029000.t1"; gene_id "Ledus.S3G029000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2199.t1 is derived from g9062.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15913830	15914036	.	+	.	Ledus.S2G208100
Ledus.S2	AUGUSTUS	transcript	15913830	15914036	.	+	.	transcript_id "Ledus.S2G208100.t1"; gene_id "Ledus.S2G208100"
Ledus.S2	AUGUSTUS	start_codon	15913830	15913832	.	+	0	transcript_id "Ledus.S2G208100.t1"; gene_id "Ledus.S2G208100"
Ledus.S2	AUGUSTUS	CDS	15913830	15914036	0.96	+	0	transcript_id "Ledus.S2G208100.t1"; gene_id "Ledus.S2G208100"
Ledus.S2	AUGUSTUS	exon	15913830	15914036	.	+	.	transcript_id "Ledus.S2G208100.t1"; gene_id "Ledus.S2G208100"
Ledus.S2	AUGUSTUS	stop_codon	15914037	15914039	.	+	0	transcript_id "Ledus.S2G208100.t1"; gene_id "Ledus.S2G208100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5461.t1 is derived from g2900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24400275	24402383	.	-	.	Ledus.S1G288200
Ledus.S1	AUGUSTUS	transcript	24400275	24402383	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	stop_codon	24400272	24400274	.	-	0	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	CDS	24400275	24400720	0.83	-	2	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	exon	24400275	24400720	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	intron	24400721	24400808	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	CDS	24400809	24401061	1	-	0	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	exon	24400809	24401061	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	intron	24401062	24401159	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	CDS	24401160	24401318	1	-	0	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	exon	24401160	24401318	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	intron	24401319	24401415	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	CDS	24401416	24401523	1	-	0	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	exon	24401416	24401523	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	intron	24401524	24401620	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	CDS	24401621	24401795	1	-	1	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	exon	24401621	24401795	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	intron	24401796	24401953	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	CDS	24401954	24402194	1	-	2	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	exon	24401954	24402194	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	intron	24402195	24402277	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	CDS	24402278	24402383	0.98	-	0	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	exon	24402278	24402383	.	-	.	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
Ledus.S1	AUGUSTUS	start_codon	24402381	24402383	.	-	0	transcript_id "Ledus.S1G288200.t1"; gene_id "Ledus.S1G288200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2012.t1 is derived from g8875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14170827	14176180	.	+	.	Ledus.S2G189400
Ledus.S2	AUGUSTUS	transcript	14170827	14176180	.	+	.	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	start_codon	14170827	14170829	.	+	0	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	CDS	14170827	14173892	0.89	+	0	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	exon	14170827	14173892	.	+	.	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	intron	14173893	14174010	.	+	.	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	CDS	14174011	14175105	0.85	+	0	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	exon	14174011	14175105	.	+	.	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	intron	14175106	14175217	.	+	.	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	CDS	14175218	14175443	1	+	0	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	exon	14175218	14175443	.	+	.	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	intron	14175444	14175549	.	+	.	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	CDS	14175550	14175692	0.95	+	2	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	exon	14175550	14175692	.	+	.	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	intron	14175693	14175799	.	+	.	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	CDS	14175800	14176180	0.84	+	0	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	exon	14175800	14176180	.	+	.	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
Ledus.S2	AUGUSTUS	stop_codon	14176181	14176183	.	+	0	transcript_id "Ledus.S2G189400.t1"; gene_id "Ledus.S2G189400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11705.t1 is derived from g5324.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6107962	6109700	.	+	.	Ledus.S4G086100
Ledus.S4	AUGUSTUS	transcript	6107962	6109700	.	+	.	transcript_id "Ledus.S4G086100.t1"; gene_id "Ledus.S4G086100"
Ledus.S4	AUGUSTUS	start_codon	6107962	6107964	.	+	0	transcript_id "Ledus.S4G086100.t1"; gene_id "Ledus.S4G086100"
Ledus.S4	AUGUSTUS	CDS	6107962	6108806	0.97	+	0	transcript_id "Ledus.S4G086100.t1"; gene_id "Ledus.S4G086100"
Ledus.S4	AUGUSTUS	exon	6107962	6108806	.	+	.	transcript_id "Ledus.S4G086100.t1"; gene_id "Ledus.S4G086100"
Ledus.S4	AUGUSTUS	intron	6108807	6108891	.	+	.	transcript_id "Ledus.S4G086100.t1"; gene_id "Ledus.S4G086100"
Ledus.S4	AUGUSTUS	CDS	6108892	6109019	1	+	1	transcript_id "Ledus.S4G086100.t1"; gene_id "Ledus.S4G086100"
Ledus.S4	AUGUSTUS	exon	6108892	6109019	.	+	.	transcript_id "Ledus.S4G086100.t1"; gene_id "Ledus.S4G086100"
Ledus.S4	AUGUSTUS	intron	6109020	6109101	.	+	.	transcript_id "Ledus.S4G086100.t1"; gene_id "Ledus.S4G086100"
Ledus.S4	AUGUSTUS	CDS	6109102	6109700	1	+	2	transcript_id "Ledus.S4G086100.t1"; gene_id "Ledus.S4G086100"
Ledus.S4	AUGUSTUS	exon	6109102	6109700	.	+	.	transcript_id "Ledus.S4G086100.t1"; gene_id "Ledus.S4G086100"
Ledus.S4	AUGUSTUS	stop_codon	6109701	6109703	.	+	0	transcript_id "Ledus.S4G086100.t1"; gene_id "Ledus.S4G086100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12497.t1 is derived from g6118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12387004	12388857	.	+	.	Ledus.S4G165300
Ledus.S4	AUGUSTUS	transcript	12387004	12388857	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	start_codon	12387004	12387006	.	+	0	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	CDS	12387004	12387024	0.47	+	0	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	exon	12387004	12387024	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	intron	12387025	12387127	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	CDS	12387128	12387200	0.49	+	0	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	exon	12387128	12387200	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	intron	12387201	12387385	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	CDS	12387386	12387537	0.68	+	2	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	exon	12387386	12387537	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	intron	12387538	12387632	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	CDS	12387633	12387827	1	+	0	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	exon	12387633	12387827	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	intron	12387828	12387912	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	CDS	12387913	12388075	1	+	0	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	exon	12387913	12388075	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	intron	12388076	12388154	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	CDS	12388155	12388498	0.37	+	2	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	exon	12388155	12388498	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	intron	12388499	12388806	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	CDS	12388807	12388857	0.46	+	0	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	exon	12388807	12388857	.	+	.	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
Ledus.S4	AUGUSTUS	stop_codon	12388858	12388860	.	+	0	transcript_id "Ledus.S4G165300.t1"; gene_id "Ledus.S4G165300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9329.t1 is derived from g10359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6160128	6162449	.	-	.	Ledus.S3G080600
Ledus.S3	AUGUSTUS	transcript	6160128	6162449	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	stop_codon	6160125	6160127	.	-	0	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	CDS	6160128	6160217	0.46	-	0	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	exon	6160128	6160217	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	intron	6160218	6160350	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	CDS	6160351	6160562	1	-	2	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	exon	6160351	6160562	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	intron	6160563	6160735	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	CDS	6160736	6160805	1	-	0	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	exon	6160736	6160805	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	intron	6160806	6160930	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	CDS	6160931	6161125	1	-	0	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	exon	6160931	6161125	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	intron	6161126	6161236	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	CDS	6161237	6161302	0.98	-	0	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	exon	6161237	6161302	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	intron	6161303	6161451	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	CDS	6161452	6161508	1	-	0	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	exon	6161452	6161508	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	intron	6161509	6161603	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	CDS	6161604	6161703	1	-	1	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	exon	6161604	6161703	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	intron	6161704	6161858	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	CDS	6161859	6162027	0.96	-	2	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	exon	6161859	6162027	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	intron	6162028	6162259	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	CDS	6162260	6162310	0.96	-	2	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	exon	6162260	6162310	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	intron	6162311	6162388	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	CDS	6162389	6162449	0.61	-	0	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	exon	6162389	6162449	.	-	.	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
Ledus.S3	AUGUSTUS	start_codon	6162447	6162449	.	-	0	transcript_id "Ledus.S3G080600.t1"; gene_id "Ledus.S3G080600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2034.t1 is derived from g8897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14270837	14271553	.	-	.	Ledus.S2G191600
Ledus.S2	AUGUSTUS	transcript	14270837	14271553	.	-	.	transcript_id "Ledus.S2G191600.t1"; gene_id "Ledus.S2G191600"
Ledus.S2	AUGUSTUS	stop_codon	14270834	14270836	.	-	0	transcript_id "Ledus.S2G191600.t1"; gene_id "Ledus.S2G191600"
Ledus.S2	AUGUSTUS	CDS	14270837	14271553	0.99	-	0	transcript_id "Ledus.S2G191600.t1"; gene_id "Ledus.S2G191600"
Ledus.S2	AUGUSTUS	exon	14270837	14271553	.	-	.	transcript_id "Ledus.S2G191600.t1"; gene_id "Ledus.S2G191600"
Ledus.S2	AUGUSTUS	start_codon	14271551	14271553	.	-	0	transcript_id "Ledus.S2G191600.t1"; gene_id "Ledus.S2G191600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3471.t1 is derived from g906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8565648	8574476	.	-	.	Ledus.S1G089200
Ledus.S1	AUGUSTUS	transcript	8565648	8574476	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	stop_codon	8565645	8565647	.	-	0	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8565648	8566895	0.82	-	0	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8565648	8566895	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8566896	8567032	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8567033	8567338	0.87	-	0	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8567033	8567338	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8567339	8567614	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8567615	8567803	0.94	-	0	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8567615	8567803	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8567804	8567907	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8567908	8567958	0.93	-	0	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8567908	8567958	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8567959	8568096	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8568097	8568241	0.95	-	1	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8568097	8568241	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8568242	8568985	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8568986	8569219	1	-	1	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8568986	8569219	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8569220	8569310	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8569311	8569415	1	-	1	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8569311	8569415	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8569416	8569600	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8569601	8569725	1	-	0	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8569601	8569725	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8569726	8570041	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8570042	8570176	1	-	0	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8570042	8570176	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8570177	8570434	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8570435	8570556	1	-	2	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8570435	8570556	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8570557	8570759	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8570760	8570917	1	-	1	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8570760	8570917	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8570918	8571068	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8571069	8571226	1	-	0	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8571069	8571226	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8571227	8571307	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8571308	8571644	1	-	1	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8571308	8571644	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8571645	8571747	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8571748	8571873	1	-	1	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8571748	8571873	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8571874	8572198	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8572199	8572429	1	-	1	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8572199	8572429	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8572430	8572514	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8572515	8572886	1	-	1	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8572515	8572886	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8572887	8573274	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8573275	8573957	0.92	-	0	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8573275	8573957	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8573958	8574057	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8574058	8574154	0.53	-	1	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8574058	8574154	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	intron	8574155	8574270	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	CDS	8574271	8574476	0.58	-	0	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	exon	8574271	8574476	.	-	.	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
Ledus.S1	AUGUSTUS	start_codon	8574474	8574476	.	-	0	transcript_id "Ledus.S1G089200.t1"; gene_id "Ledus.S1G089200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10273.t1 is derived from g11303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13965093	13966015	.	+	.	Ledus.S3G175000
Ledus.S3	AUGUSTUS	transcript	13965093	13966015	.	+	.	transcript_id "Ledus.S3G175000.t1"; gene_id "Ledus.S3G175000"
Ledus.S3	AUGUSTUS	start_codon	13965093	13965095	.	+	0	transcript_id "Ledus.S3G175000.t1"; gene_id "Ledus.S3G175000"
Ledus.S3	AUGUSTUS	CDS	13965093	13965648	0.03	+	0	transcript_id "Ledus.S3G175000.t1"; gene_id "Ledus.S3G175000"
Ledus.S3	AUGUSTUS	exon	13965093	13965648	.	+	.	transcript_id "Ledus.S3G175000.t1"; gene_id "Ledus.S3G175000"
Ledus.S3	AUGUSTUS	intron	13965649	13965902	.	+	.	transcript_id "Ledus.S3G175000.t1"; gene_id "Ledus.S3G175000"
Ledus.S3	AUGUSTUS	CDS	13965903	13966015	0.01	+	2	transcript_id "Ledus.S3G175000.t1"; gene_id "Ledus.S3G175000"
Ledus.S3	AUGUSTUS	exon	13965903	13966015	.	+	.	transcript_id "Ledus.S3G175000.t1"; gene_id "Ledus.S3G175000"
Ledus.S3	AUGUSTUS	stop_codon	13966016	13966018	.	+	0	transcript_id "Ledus.S3G175000.t1"; gene_id "Ledus.S3G175000"
# This transcript jg2058.t2 is derived from g8921.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2059.t1 is derived from g8922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14389061	14389663	.	+	.	Ledus.S2G194100
Ledus.S2	AUGUSTUS	transcript	14389061	14389663	.	+	.	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	start_codon	14389061	14389063	.	+	0	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	CDS	14389061	14389186	0.99	+	0	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	exon	14389061	14389186	.	+	.	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	intron	14389187	14389260	.	+	.	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	CDS	14389261	14389323	1	+	0	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	exon	14389261	14389323	.	+	.	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	intron	14389324	14389411	.	+	.	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	CDS	14389412	14389476	1	+	0	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	exon	14389412	14389476	.	+	.	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	intron	14389477	14389569	.	+	.	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	CDS	14389570	14389663	1	+	1	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	exon	14389570	14389663	.	+	.	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
Ledus.S2	AUGUSTUS	stop_codon	14389664	14389666	.	+	0	transcript_id "Ledus.S2G194100.t1"; gene_id "Ledus.S2G194100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9299.t1 is derived from g10329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5869738	5871172	.	+	.	Ledus.S3G077600
Ledus.S3	AUGUSTUS	transcript	5869738	5871172	.	+	.	transcript_id "Ledus.S3G077600.t1"; gene_id "Ledus.S3G077600"
Ledus.S3	AUGUSTUS	start_codon	5869738	5869740	.	+	0	transcript_id "Ledus.S3G077600.t1"; gene_id "Ledus.S3G077600"
Ledus.S3	AUGUSTUS	CDS	5869738	5870152	1	+	0	transcript_id "Ledus.S3G077600.t1"; gene_id "Ledus.S3G077600"
Ledus.S3	AUGUSTUS	exon	5869738	5870152	.	+	.	transcript_id "Ledus.S3G077600.t1"; gene_id "Ledus.S3G077600"
Ledus.S3	AUGUSTUS	intron	5870153	5870219	.	+	.	transcript_id "Ledus.S3G077600.t1"; gene_id "Ledus.S3G077600"
Ledus.S3	AUGUSTUS	CDS	5870220	5871172	0.58	+	2	transcript_id "Ledus.S3G077600.t1"; gene_id "Ledus.S3G077600"
Ledus.S3	AUGUSTUS	exon	5870220	5871172	.	+	.	transcript_id "Ledus.S3G077600.t1"; gene_id "Ledus.S3G077600"
Ledus.S3	AUGUSTUS	stop_codon	5871173	5871175	.	+	0	transcript_id "Ledus.S3G077600.t1"; gene_id "Ledus.S3G077600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5991.t1 is derived from g3434.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28184986	28185553	.	+	.	Ledus.S1G341200
Ledus.S1	AUGUSTUS	transcript	28184986	28185553	.	+	.	transcript_id "Ledus.S1G341200.t1"; gene_id "Ledus.S1G341200"
Ledus.S1	AUGUSTUS	start_codon	28184986	28184988	.	+	0	transcript_id "Ledus.S1G341200.t1"; gene_id "Ledus.S1G341200"
Ledus.S1	AUGUSTUS	CDS	28184986	28185251	0.99	+	0	transcript_id "Ledus.S1G341200.t1"; gene_id "Ledus.S1G341200"
Ledus.S1	AUGUSTUS	exon	28184986	28185251	.	+	.	transcript_id "Ledus.S1G341200.t1"; gene_id "Ledus.S1G341200"
Ledus.S1	AUGUSTUS	intron	28185252	28185330	.	+	.	transcript_id "Ledus.S1G341200.t1"; gene_id "Ledus.S1G341200"
Ledus.S1	AUGUSTUS	CDS	28185331	28185553	0.98	+	1	transcript_id "Ledus.S1G341200.t1"; gene_id "Ledus.S1G341200"
Ledus.S1	AUGUSTUS	exon	28185331	28185553	.	+	.	transcript_id "Ledus.S1G341200.t1"; gene_id "Ledus.S1G341200"
Ledus.S1	AUGUSTUS	stop_codon	28185554	28185556	.	+	0	transcript_id "Ledus.S1G341200.t1"; gene_id "Ledus.S1G341200"
# This transcript jg4476.t2 is derived from g1912.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4477.t1 is derived from g1913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17254421	17255260	.	+	.	Ledus.S1G189800
Ledus.S1	AUGUSTUS	transcript	17254421	17255260	.	+	.	transcript_id "Ledus.S1G189800.t1"; gene_id "Ledus.S1G189800"
Ledus.S1	AUGUSTUS	start_codon	17254421	17254423	.	+	0	transcript_id "Ledus.S1G189800.t1"; gene_id "Ledus.S1G189800"
Ledus.S1	AUGUSTUS	CDS	17254421	17255260	0.97	+	0	transcript_id "Ledus.S1G189800.t1"; gene_id "Ledus.S1G189800"
Ledus.S1	AUGUSTUS	exon	17254421	17255260	.	+	.	transcript_id "Ledus.S1G189800.t1"; gene_id "Ledus.S1G189800"
Ledus.S1	AUGUSTUS	stop_codon	17255261	17255263	.	+	0	transcript_id "Ledus.S1G189800.t1"; gene_id "Ledus.S1G189800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11633.t1 is derived from g5252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5692222	5694264	.	-	.	Ledus.S4G078900
Ledus.S4	AUGUSTUS	transcript	5692222	5694264	.	-	.	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	stop_codon	5692219	5692221	.	-	0	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	CDS	5692222	5692368	0.52	-	0	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	exon	5692222	5692368	.	-	.	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	intron	5692369	5692452	.	-	.	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	CDS	5692453	5692656	1	-	0	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	exon	5692453	5692656	.	-	.	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	intron	5692657	5693358	.	-	.	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	CDS	5693359	5693603	1	-	2	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	exon	5693359	5693603	.	-	.	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	intron	5693604	5693710	.	-	.	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	CDS	5693711	5693930	1	-	0	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	exon	5693711	5693930	.	-	.	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	intron	5693931	5694168	.	-	.	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	CDS	5694169	5694264	0.4	-	0	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	exon	5694169	5694264	.	-	.	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
Ledus.S4	AUGUSTUS	start_codon	5694262	5694264	.	-	0	transcript_id "Ledus.S4G078900.t1"; gene_id "Ledus.S4G078900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7158.t1 is derived from g6689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1838315	1839851	.	-	.	Ledus.C7G021900
Ledus.C7	AUGUSTUS	transcript	1838315	1839851	.	-	.	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	stop_codon	1838312	1838314	.	-	0	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	CDS	1838315	1838482	0.98	-	0	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	exon	1838315	1838482	.	-	.	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	intron	1838483	1838586	.	-	.	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	CDS	1838587	1838700	0.93	-	0	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	exon	1838587	1838700	.	-	.	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	intron	1838701	1838779	.	-	.	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	CDS	1838780	1838884	1	-	0	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	exon	1838780	1838884	.	-	.	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	intron	1838885	1838985	.	-	.	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	CDS	1838986	1839195	1	-	0	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	exon	1838986	1839195	.	-	.	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	intron	1839196	1839305	.	-	.	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	CDS	1839306	1839695	0.47	-	0	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	exon	1839306	1839695	.	-	.	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	intron	1839696	1839791	.	-	.	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	CDS	1839792	1839851	0.46	-	0	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	exon	1839792	1839851	.	-	.	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
Ledus.C7	AUGUSTUS	start_codon	1839849	1839851	.	-	0	transcript_id "Ledus.C7G021900.t1"; gene_id "Ledus.C7G021900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6160.t1 is derived from g3603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29332530	29333396	.	+	.	Ledus.S1G358100
Ledus.S1	AUGUSTUS	transcript	29332701	29333396	.	+	.	transcript_id "Ledus.S1G358100.t1"; gene_id "Ledus.S1G358100"
Ledus.S1	AUGUSTUS	start_codon	29332701	29332703	.	+	0	transcript_id "Ledus.S1G358100.t1"; gene_id "Ledus.S1G358100"
Ledus.S1	AUGUSTUS	CDS	29332701	29333396	1	+	0	transcript_id "Ledus.S1G358100.t1"; gene_id "Ledus.S1G358100"
Ledus.S1	AUGUSTUS	exon	29332701	29333396	.	+	.	transcript_id "Ledus.S1G358100.t1"; gene_id "Ledus.S1G358100"
Ledus.S1	AUGUSTUS	stop_codon	29333397	29333399	.	+	0	transcript_id "Ledus.S1G358100.t1"; gene_id "Ledus.S1G358100"
Ledus.S1	AUGUSTUS	transcript	29332530	29333396	.	+	.	transcript_id "Ledus.S1G358100.t2"; gene_id "Ledus.S1G358100"
Ledus.S1	AUGUSTUS	start_codon	29332530	29332532	.	+	0	transcript_id "Ledus.S1G358100.t2"; gene_id "Ledus.S1G358100"
Ledus.S1	AUGUSTUS	CDS	29332530	29333396	0.97	+	0	transcript_id "Ledus.S1G358100.t2"; gene_id "Ledus.S1G358100"
Ledus.S1	AUGUSTUS	exon	29332530	29333396	.	+	.	transcript_id "Ledus.S1G358100.t2"; gene_id "Ledus.S1G358100"
Ledus.S1	AUGUSTUS	stop_codon	29333397	29333399	.	+	0	transcript_id "Ledus.S1G358100.t2"; gene_id "Ledus.S1G358100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2250.t1 is derived from g9113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16481890	16482673	.	-	.	Ledus.S2G213200
Ledus.S2	AUGUSTUS	transcript	16481890	16482673	.	-	.	transcript_id "Ledus.S2G213200.t1"; gene_id "Ledus.S2G213200"
Ledus.S2	AUGUSTUS	stop_codon	16481887	16481889	.	-	0	transcript_id "Ledus.S2G213200.t1"; gene_id "Ledus.S2G213200"
Ledus.S2	AUGUSTUS	CDS	16481890	16482227	0.43	-	2	transcript_id "Ledus.S2G213200.t1"; gene_id "Ledus.S2G213200"
Ledus.S2	AUGUSTUS	exon	16481890	16482227	.	-	.	transcript_id "Ledus.S2G213200.t1"; gene_id "Ledus.S2G213200"
Ledus.S2	AUGUSTUS	intron	16482228	16482368	.	-	.	transcript_id "Ledus.S2G213200.t1"; gene_id "Ledus.S2G213200"
Ledus.S2	AUGUSTUS	CDS	16482369	16482468	0.73	-	0	transcript_id "Ledus.S2G213200.t1"; gene_id "Ledus.S2G213200"
Ledus.S2	AUGUSTUS	exon	16482369	16482468	.	-	.	transcript_id "Ledus.S2G213200.t1"; gene_id "Ledus.S2G213200"
Ledus.S2	AUGUSTUS	intron	16482469	16482580	.	-	.	transcript_id "Ledus.S2G213200.t1"; gene_id "Ledus.S2G213200"
Ledus.S2	AUGUSTUS	CDS	16482581	16482673	0.77	-	0	transcript_id "Ledus.S2G213200.t1"; gene_id "Ledus.S2G213200"
Ledus.S2	AUGUSTUS	exon	16482581	16482673	.	-	.	transcript_id "Ledus.S2G213200.t1"; gene_id "Ledus.S2G213200"
Ledus.S2	AUGUSTUS	start_codon	16482671	16482673	.	-	0	transcript_id "Ledus.S2G213200.t1"; gene_id "Ledus.S2G213200"
# This transcript jg9883.t2 is derived from g10913.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9883.t3 is derived from g10913.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9884.t1 is derived from g10914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10917921	10920674	.	-	.	Ledus.S3G136100
Ledus.S3	AUGUSTUS	transcript	10917921	10920674	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	stop_codon	10917918	10917920	.	-	0	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	CDS	10917921	10917940	0.53	-	2	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	exon	10917921	10917940	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	intron	10917941	10918041	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	CDS	10918042	10918258	0.53	-	0	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	exon	10918042	10918258	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	intron	10918259	10918345	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	CDS	10918346	10918595	0.99	-	1	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	exon	10918346	10918595	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	intron	10918596	10918709	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	CDS	10918710	10918864	0.99	-	0	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	exon	10918710	10918864	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	intron	10918865	10918996	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	CDS	10918997	10919199	1	-	2	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	exon	10918997	10919199	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	intron	10919200	10919323	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	CDS	10919324	10919486	1	-	0	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	exon	10919324	10919486	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	intron	10919487	10919719	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	CDS	10919720	10919962	0.96	-	0	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	exon	10919720	10919962	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	intron	10919963	10920069	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	CDS	10920070	10920180	0.99	-	0	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	exon	10920070	10920180	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	intron	10920181	10920380	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	CDS	10920381	10920563	1	-	0	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	exon	10920381	10920563	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	intron	10920564	10920653	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	CDS	10920654	10920674	0.59	-	0	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	exon	10920654	10920674	.	-	.	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
Ledus.S3	AUGUSTUS	start_codon	10920672	10920674	.	-	0	transcript_id "Ledus.S3G136100.t1"; gene_id "Ledus.S3G136100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg872.t1 is derived from g7733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5915392	5919470	.	-	.	Ledus.S2G075400
Ledus.S2	AUGUSTUS	transcript	5915392	5919470	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	stop_codon	5915389	5915391	.	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5915392	5915502	0.99	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5915392	5915502	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5915503	5915602	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5915603	5915798	1	-	1	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5915603	5915798	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5915799	5915915	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5915916	5916018	1	-	2	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5915916	5916018	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5916019	5916099	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5916100	5916220	1	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5916100	5916220	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5916221	5916363	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5916364	5916456	1	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5916364	5916456	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5916457	5916596	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5916597	5916657	1	-	1	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5916597	5916657	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5916658	5916740	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5916741	5916802	1	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5916741	5916802	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5916803	5916919	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5916920	5917064	1	-	1	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5916920	5917064	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5917065	5917193	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5917194	5917270	1	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5917194	5917270	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5917271	5917387	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5917388	5917431	1	-	2	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5917388	5917431	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5917432	5917514	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5917515	5917648	1	-	1	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5917515	5917648	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5917649	5917763	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5917764	5917825	1	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5917764	5917825	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5917826	5917925	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5917926	5918033	1	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5917926	5918033	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918034	5918113	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5918114	5918231	1	-	1	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5918114	5918231	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918232	5918375	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5918376	5918478	1	-	2	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5918376	5918478	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918479	5918632	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5918633	5918732	1	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5918633	5918732	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918733	5918842	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5918843	5918953	1	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5918843	5918953	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918954	5919044	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5919045	5919119	1	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5919045	5919119	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5919120	5919407	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5919408	5919470	0.59	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5919408	5919470	.	-	.	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	start_codon	5919468	5919470	.	-	0	transcript_id "Ledus.S2G075400.t1"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	transcript	5915392	5919470	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	stop_codon	5915389	5915391	.	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5915392	5915502	1	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5915392	5915502	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5915503	5915602	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5915603	5915798	1	-	1	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5915603	5915798	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5915799	5915915	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5915916	5916018	1	-	2	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5915916	5916018	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5916019	5916099	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5916100	5916220	1	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5916100	5916220	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5916221	5916363	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5916364	5916456	1	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5916364	5916456	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5916457	5916596	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5916597	5916657	1	-	1	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5916597	5916657	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5916658	5916740	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5916741	5916802	1	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5916741	5916802	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5916803	5916919	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5916920	5917064	1	-	1	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5916920	5917064	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5917065	5917193	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5917194	5917270	1	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5917194	5917270	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5917271	5917387	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5917388	5917431	1	-	2	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5917388	5917431	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5917432	5917514	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5917515	5917648	0.99	-	1	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5917515	5917648	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5917649	5917763	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5917764	5917825	1	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5917764	5917825	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5917826	5917949	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5917950	5918033	0.7	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5917950	5918033	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918034	5918113	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5918114	5918231	1	-	1	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5918114	5918231	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918232	5918375	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5918376	5918478	1	-	2	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5918376	5918478	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918479	5918632	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5918633	5918732	1	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5918633	5918732	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918733	5918842	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5918843	5918953	1	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5918843	5918953	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918954	5919044	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5919045	5919119	1	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5919045	5919119	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5919120	5919407	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5919408	5919470	0.55	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5919408	5919470	.	-	.	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	start_codon	5919468	5919470	.	-	0	transcript_id "Ledus.S2G075400.t2"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	transcript	5918445	5919470	.	-	.	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	stop_codon	5918442	5918444	.	-	0	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5918445	5918449	0.96	-	2	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5918445	5918449	.	-	.	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918450	5918632	.	-	.	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5918633	5918732	0.99	-	0	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5918633	5918732	.	-	.	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918733	5918842	.	-	.	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5918843	5918953	0.99	-	0	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5918843	5918953	.	-	.	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5918954	5919044	.	-	.	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5919045	5919119	1	-	0	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5919045	5919119	.	-	.	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	intron	5919120	5919407	.	-	.	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	CDS	5919408	5919470	0.58	-	0	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	exon	5919408	5919470	.	-	.	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
Ledus.S2	AUGUSTUS	start_codon	5919468	5919470	.	-	0	transcript_id "Ledus.S2G075400.t3"; gene_id "Ledus.S2G075400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg679.t1 is derived from g7540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4152222	4157372	.	-	.	Ledus.S2G056100
Ledus.S2	AUGUSTUS	transcript	4152222	4157372	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	stop_codon	4152219	4152221	.	-	0	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4152222	4152366	0.85	-	1	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4152222	4152366	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4152367	4152443	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4152444	4152509	0.79	-	1	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4152444	4152509	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4152510	4152974	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4152975	4153483	0.82	-	0	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4152975	4153483	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4153484	4153588	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4153589	4153768	0.85	-	0	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4153589	4153768	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4153769	4153930	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4153931	4154143	0.99	-	0	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4153931	4154143	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4154144	4154256	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4154257	4154385	1	-	0	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4154257	4154385	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4154386	4154473	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4154474	4154642	1	-	1	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4154474	4154642	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4154643	4154727	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4154728	4155009	1	-	1	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4154728	4155009	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4155010	4155144	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4155145	4155224	0.99	-	0	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4155145	4155224	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4155225	4155299	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4155300	4155419	1	-	0	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4155300	4155419	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4155420	4155566	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4155567	4155729	1	-	1	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4155567	4155729	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4155730	4155916	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4155917	4156166	1	-	2	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4155917	4156166	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4156167	4156323	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4156324	4156423	1	-	0	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4156324	4156423	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4156424	4156548	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4156549	4156642	1	-	1	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4156549	4156642	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4156643	4156776	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4156777	4156880	0.99	-	0	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4156777	4156880	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4156881	4156990	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4156991	4157047	0.99	-	0	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4156991	4157047	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	intron	4157048	4157351	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	CDS	4157352	4157372	0.43	-	0	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	exon	4157352	4157372	.	-	.	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
Ledus.S2	AUGUSTUS	start_codon	4157370	4157372	.	-	0	transcript_id "Ledus.S2G056100.t1"; gene_id "Ledus.S2G056100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12879.t1 is derived from g4452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	318795	320894	.	+	.	Ledus.C10G002200
Ledus.C10	AUGUSTUS	transcript	318795	320894	.	+	.	transcript_id "Ledus.C10G002200.t1"; gene_id "Ledus.C10G002200"
Ledus.C10	AUGUSTUS	start_codon	318795	318797	.	+	0	transcript_id "Ledus.C10G002200.t1"; gene_id "Ledus.C10G002200"
Ledus.C10	AUGUSTUS	CDS	318795	320894	0.99	+	0	transcript_id "Ledus.C10G002200.t1"; gene_id "Ledus.C10G002200"
Ledus.C10	AUGUSTUS	exon	318795	320894	.	+	.	transcript_id "Ledus.C10G002200.t1"; gene_id "Ledus.C10G002200"
Ledus.C10	AUGUSTUS	stop_codon	320895	320897	.	+	0	transcript_id "Ledus.C10G002200.t1"; gene_id "Ledus.C10G002200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3095.t1 is derived from g530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5826108	5829563	.	-	.	Ledus.S1G051600
Ledus.S1	AUGUSTUS	transcript	5826108	5829563	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	stop_codon	5826105	5826107	.	-	0	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5826108	5826378	0.92	-	1	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5826108	5826378	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	intron	5826379	5826489	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5826490	5826686	1	-	0	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5826490	5826686	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	intron	5826687	5826774	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5826775	5827026	1	-	0	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5826775	5827026	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	intron	5827027	5827159	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5827160	5827313	0.98	-	1	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5827160	5827313	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	intron	5827314	5827476	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5827477	5827568	1	-	0	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5827477	5827568	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	intron	5827569	5827674	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5827675	5827795	0.98	-	1	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5827675	5827795	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	intron	5827796	5827906	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5827907	5827995	0.94	-	0	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5827907	5827995	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	intron	5827996	5828107	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5828108	5828230	0.99	-	0	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5828108	5828230	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	intron	5828231	5828314	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5828315	5828442	0.86	-	2	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5828315	5828442	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	intron	5828443	5828545	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5828546	5828636	0.98	-	0	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5828546	5828636	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	intron	5828637	5828732	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5828733	5828946	1	-	1	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5828733	5828946	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	intron	5828947	5829119	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5829120	5829180	0.97	-	2	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5829120	5829180	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	intron	5829181	5829388	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	CDS	5829389	5829563	0.95	-	0	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	exon	5829389	5829563	.	-	.	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
Ledus.S1	AUGUSTUS	start_codon	5829561	5829563	.	-	0	transcript_id "Ledus.S1G051600.t1"; gene_id "Ledus.S1G051600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11631.t1 is derived from g5249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5686168	5687336	.	+	.	Ledus.S4G078700
Ledus.S4	AUGUSTUS	transcript	5686168	5687336	.	+	.	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	start_codon	5686168	5686170	.	+	0	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	CDS	5686168	5686224	0.81	+	0	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	exon	5686168	5686224	.	+	.	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	intron	5686225	5686343	.	+	.	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	CDS	5686344	5686447	0.85	+	0	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	exon	5686344	5686447	.	+	.	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	intron	5686448	5686695	.	+	.	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	CDS	5686696	5687018	1	+	1	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	exon	5686696	5687018	.	+	.	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	intron	5687019	5687241	.	+	.	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	CDS	5687242	5687336	1	+	2	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	exon	5687242	5687336	.	+	.	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
Ledus.S4	AUGUSTUS	stop_codon	5687337	5687339	.	+	0	transcript_id "Ledus.S4G078700.t1"; gene_id "Ledus.S4G078700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg365.t1 is derived from g7226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1956610	1958258	.	+	.	Ledus.S2G024700
Ledus.S2	AUGUSTUS	transcript	1956610	1958258	.	+	.	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	start_codon	1956610	1956612	.	+	0	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	CDS	1956610	1956926	0.71	+	0	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	exon	1956610	1956926	.	+	.	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	intron	1956927	1957049	.	+	.	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	CDS	1957050	1957334	1	+	1	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	exon	1957050	1957334	.	+	.	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	intron	1957335	1957437	.	+	.	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	CDS	1957438	1957696	1	+	1	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	exon	1957438	1957696	.	+	.	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	intron	1957697	1957784	.	+	.	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	CDS	1957785	1957943	1	+	0	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	exon	1957785	1957943	.	+	.	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	intron	1957944	1958027	.	+	.	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	CDS	1958028	1958258	1	+	0	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	exon	1958028	1958258	.	+	.	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
Ledus.S2	AUGUSTUS	stop_codon	1958259	1958261	.	+	0	transcript_id "Ledus.S2G024700.t1"; gene_id "Ledus.S2G024700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12916.t1 is derived from g4408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	320523	321426	.	-	.	Ledus.C9G002400
Ledus.C9	AUGUSTUS	transcript	320523	321426	.	-	.	transcript_id "Ledus.C9G002400.t1"; gene_id "Ledus.C9G002400"
Ledus.C9	AUGUSTUS	stop_codon	320520	320522	.	-	0	transcript_id "Ledus.C9G002400.t1"; gene_id "Ledus.C9G002400"
Ledus.C9	AUGUSTUS	CDS	320523	320564	0.02	-	0	transcript_id "Ledus.C9G002400.t1"; gene_id "Ledus.C9G002400"
Ledus.C9	AUGUSTUS	exon	320523	320564	.	-	.	transcript_id "Ledus.C9G002400.t1"; gene_id "Ledus.C9G002400"
Ledus.C9	AUGUSTUS	intron	320565	321402	.	-	.	transcript_id "Ledus.C9G002400.t1"; gene_id "Ledus.C9G002400"
Ledus.C9	AUGUSTUS	CDS	321403	321426	0.02	-	0	transcript_id "Ledus.C9G002400.t1"; gene_id "Ledus.C9G002400"
Ledus.C9	AUGUSTUS	exon	321403	321426	.	-	.	transcript_id "Ledus.C9G002400.t1"; gene_id "Ledus.C9G002400"
Ledus.C9	AUGUSTUS	start_codon	321424	321426	.	-	0	transcript_id "Ledus.C9G002400.t1"; gene_id "Ledus.C9G002400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8125.t1 is derived from g12796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9233958	9239720	.	-	.	Ledus.S5G090300
Ledus.S5	AUGUSTUS	transcript	9233958	9239720	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	stop_codon	9233955	9233957	.	-	0	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	CDS	9233958	9234110	0.98	-	0	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	exon	9233958	9234110	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	intron	9234111	9234234	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	CDS	9234235	9234357	1	-	0	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	exon	9234235	9234357	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	intron	9234358	9234460	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	CDS	9234461	9234916	0.73	-	0	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	exon	9234461	9234916	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	intron	9234917	9235048	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	CDS	9235049	9235153	1	-	0	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	exon	9235049	9235153	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	intron	9235154	9235253	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	CDS	9235254	9235694	0.99	-	0	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	exon	9235254	9235694	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	intron	9235695	9235800	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	CDS	9235801	9237930	0.89	-	0	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	exon	9235801	9237930	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	intron	9237931	9238018	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	CDS	9238019	9238156	1	-	0	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	exon	9238019	9238156	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	intron	9238157	9238277	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	CDS	9238278	9238376	1	-	0	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	exon	9238278	9238376	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	intron	9238377	9238635	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	CDS	9238636	9238736	1	-	2	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	exon	9238636	9238736	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	intron	9238737	9238951	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	CDS	9238952	9238969	1	-	2	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	exon	9238952	9238969	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	intron	9238970	9239542	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	CDS	9239543	9239720	0.72	-	0	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	exon	9239543	9239720	.	-	.	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
Ledus.S5	AUGUSTUS	start_codon	9239718	9239720	.	-	0	transcript_id "Ledus.S5G090300.t1"; gene_id "Ledus.S5G090300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2876.t1 is derived from g311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4346642	4347949	.	+	.	Ledus.S1G029700
Ledus.S1	AUGUSTUS	transcript	4346642	4347949	.	+	.	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	start_codon	4346642	4346644	.	+	0	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	CDS	4346642	4347555	0.96	+	0	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	exon	4346642	4347555	.	+	.	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	intron	4347556	4347646	.	+	.	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	CDS	4347647	4347681	1	+	1	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	exon	4347647	4347681	.	+	.	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	intron	4347682	4347807	.	+	.	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	CDS	4347808	4347852	0.86	+	2	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	exon	4347808	4347852	.	+	.	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	intron	4347853	4347944	.	+	.	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	CDS	4347945	4347949	1	+	2	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	exon	4347945	4347949	.	+	.	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
Ledus.S1	AUGUSTUS	stop_codon	4347950	4347952	.	+	0	transcript_id "Ledus.S1G029700.t1"; gene_id "Ledus.S1G029700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1491.t1 is derived from g8352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10568899	10570041	.	+	.	Ledus.S2G137300
Ledus.S2	AUGUSTUS	transcript	10568899	10570041	.	+	.	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	start_codon	10568899	10568901	.	+	0	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	CDS	10568899	10569174	0.67	+	0	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	exon	10568899	10569174	.	+	.	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	intron	10569175	10569278	.	+	.	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	CDS	10569279	10569431	0.98	+	0	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	exon	10569279	10569431	.	+	.	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	intron	10569432	10569514	.	+	.	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	CDS	10569515	10569766	0.97	+	0	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	exon	10569515	10569766	.	+	.	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	intron	10569767	10569852	.	+	.	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	CDS	10569853	10570041	0.43	+	0	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	exon	10569853	10570041	.	+	.	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
Ledus.S2	AUGUSTUS	stop_codon	10570042	10570044	.	+	0	transcript_id "Ledus.S2G137300.t1"; gene_id "Ledus.S2G137300"
# This transcript jg5434.t2 is derived from g2873.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5435.t1 is derived from g2874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24153911	24154379	.	+	.	Ledus.S1G285600
Ledus.S1	AUGUSTUS	transcript	24153911	24154379	.	+	.	transcript_id "Ledus.S1G285600.t1"; gene_id "Ledus.S1G285600"
Ledus.S1	AUGUSTUS	start_codon	24153911	24153913	.	+	0	transcript_id "Ledus.S1G285600.t1"; gene_id "Ledus.S1G285600"
Ledus.S1	AUGUSTUS	CDS	24153911	24154169	0.3	+	0	transcript_id "Ledus.S1G285600.t1"; gene_id "Ledus.S1G285600"
Ledus.S1	AUGUSTUS	exon	24153911	24154169	.	+	.	transcript_id "Ledus.S1G285600.t1"; gene_id "Ledus.S1G285600"
Ledus.S1	AUGUSTUS	intron	24154170	24154263	.	+	.	transcript_id "Ledus.S1G285600.t1"; gene_id "Ledus.S1G285600"
Ledus.S1	AUGUSTUS	CDS	24154264	24154379	0.33	+	2	transcript_id "Ledus.S1G285600.t1"; gene_id "Ledus.S1G285600"
Ledus.S1	AUGUSTUS	exon	24154264	24154379	.	+	.	transcript_id "Ledus.S1G285600.t1"; gene_id "Ledus.S1G285600"
Ledus.S1	AUGUSTUS	stop_codon	24154380	24154382	.	+	0	transcript_id "Ledus.S1G285600.t1"; gene_id "Ledus.S1G285600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2206.t1 is derived from g9069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16031639	16031839	.	-	.	Ledus.S2G208800
Ledus.S2	AUGUSTUS	transcript	16031639	16031839	.	-	.	transcript_id "Ledus.S2G208800.t1"; gene_id "Ledus.S2G208800"
Ledus.S2	AUGUSTUS	stop_codon	16031636	16031638	.	-	0	transcript_id "Ledus.S2G208800.t1"; gene_id "Ledus.S2G208800"
Ledus.S2	AUGUSTUS	CDS	16031639	16031839	0.96	-	0	transcript_id "Ledus.S2G208800.t1"; gene_id "Ledus.S2G208800"
Ledus.S2	AUGUSTUS	exon	16031639	16031839	.	-	.	transcript_id "Ledus.S2G208800.t1"; gene_id "Ledus.S2G208800"
Ledus.S2	AUGUSTUS	start_codon	16031837	16031839	.	-	0	transcript_id "Ledus.S2G208800.t1"; gene_id "Ledus.S2G208800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1805.t1 is derived from g8668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12692138	12693175	.	-	.	Ledus.S2G168700
Ledus.S2	AUGUSTUS	transcript	12692138	12693175	.	-	.	transcript_id "Ledus.S2G168700.t1"; gene_id "Ledus.S2G168700"
Ledus.S2	AUGUSTUS	stop_codon	12692135	12692137	.	-	0	transcript_id "Ledus.S2G168700.t1"; gene_id "Ledus.S2G168700"
Ledus.S2	AUGUSTUS	CDS	12692138	12693175	0.67	-	0	transcript_id "Ledus.S2G168700.t1"; gene_id "Ledus.S2G168700"
Ledus.S2	AUGUSTUS	exon	12692138	12693175	.	-	.	transcript_id "Ledus.S2G168700.t1"; gene_id "Ledus.S2G168700"
Ledus.S2	AUGUSTUS	start_codon	12693173	12693175	.	-	0	transcript_id "Ledus.S2G168700.t1"; gene_id "Ledus.S2G168700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9292.t1 is derived from g10322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5817981	5820415	.	-	.	Ledus.S3G076900
Ledus.S3	AUGUSTUS	transcript	5817981	5820415	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	stop_codon	5817978	5817980	.	-	0	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	CDS	5817981	5818049	1	-	0	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	exon	5817981	5818049	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	intron	5818050	5818120	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	CDS	5818121	5818207	1	-	0	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	exon	5818121	5818207	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	intron	5818208	5818287	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	CDS	5818288	5818427	0.88	-	2	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	exon	5818288	5818427	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	intron	5818428	5818544	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	CDS	5818545	5818620	0.68	-	0	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	exon	5818545	5818620	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	intron	5818621	5818771	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	CDS	5818772	5818798	1	-	0	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	exon	5818772	5818798	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	intron	5818799	5818917	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	CDS	5818918	5818964	1	-	2	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	exon	5818918	5818964	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	intron	5818965	5819078	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	CDS	5819079	5819187	1	-	0	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	exon	5819079	5819187	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	intron	5819188	5819300	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	CDS	5819301	5819351	0.95	-	0	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	exon	5819301	5819351	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	intron	5819352	5819490	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	CDS	5819491	5820135	0.97	-	0	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	exon	5819491	5820135	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	intron	5820136	5820361	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	CDS	5820362	5820415	0.96	-	0	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	exon	5820362	5820415	.	-	.	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
Ledus.S3	AUGUSTUS	start_codon	5820413	5820415	.	-	0	transcript_id "Ledus.S3G076900.t1"; gene_id "Ledus.S3G076900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12894.t1 is derived from g4386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	122418	126169	.	-	.	Ledus.C9G000200
Ledus.C9	AUGUSTUS	transcript	122418	126169	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	stop_codon	122415	122417	.	-	0	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	CDS	122418	122660	1	-	0	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	exon	122418	122660	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	intron	122661	122930	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	CDS	122931	123032	1	-	0	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	exon	122931	123032	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	intron	123033	123132	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	CDS	123133	123312	1	-	0	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	exon	123133	123312	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	intron	123313	123418	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	CDS	123419	123496	0.99	-	0	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	exon	123419	123496	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	intron	123497	123641	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	CDS	123642	123761	1	-	0	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	exon	123642	123761	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	intron	123762	123868	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	CDS	123869	123961	0.98	-	0	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	exon	123869	123961	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	intron	123962	124056	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	CDS	124057	124134	1	-	0	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	exon	124057	124134	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	intron	124135	124286	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	CDS	124287	124448	1	-	0	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	exon	124287	124448	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	intron	124449	124545	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	CDS	124546	125046	1	-	0	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	exon	124546	125046	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	intron	125047	125449	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	CDS	125450	126169	0.88	-	0	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	exon	125450	126169	.	-	.	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
Ledus.C9	AUGUSTUS	start_codon	126167	126169	.	-	0	transcript_id "Ledus.C9G000200.t1"; gene_id "Ledus.C9G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9796.t1 is derived from g10826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9859508	9860161	.	-	.	Ledus.S3G127300
Ledus.S3	AUGUSTUS	transcript	9859508	9860161	.	-	.	transcript_id "Ledus.S3G127300.t1"; gene_id "Ledus.S3G127300"
Ledus.S3	AUGUSTUS	stop_codon	9859505	9859507	.	-	0	transcript_id "Ledus.S3G127300.t1"; gene_id "Ledus.S3G127300"
Ledus.S3	AUGUSTUS	CDS	9859508	9859811	0.16	-	1	transcript_id "Ledus.S3G127300.t1"; gene_id "Ledus.S3G127300"
Ledus.S3	AUGUSTUS	exon	9859508	9859811	.	-	.	transcript_id "Ledus.S3G127300.t1"; gene_id "Ledus.S3G127300"
Ledus.S3	AUGUSTUS	intron	9859812	9859946	.	-	.	transcript_id "Ledus.S3G127300.t1"; gene_id "Ledus.S3G127300"
Ledus.S3	AUGUSTUS	CDS	9859947	9860161	0.16	-	0	transcript_id "Ledus.S3G127300.t1"; gene_id "Ledus.S3G127300"
Ledus.S3	AUGUSTUS	exon	9859947	9860161	.	-	.	transcript_id "Ledus.S3G127300.t1"; gene_id "Ledus.S3G127300"
Ledus.S3	AUGUSTUS	start_codon	9860159	9860161	.	-	0	transcript_id "Ledus.S3G127300.t1"; gene_id "Ledus.S3G127300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7074.t1 is derived from g6605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1244130	1246039	.	+	.	Ledus.C7G013500
Ledus.C7	AUGUSTUS	transcript	1244130	1246039	.	+	.	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	start_codon	1244130	1244132	.	+	0	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	CDS	1244130	1244546	0.62	+	0	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	exon	1244130	1244546	.	+	.	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	intron	1244547	1244637	.	+	.	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	CDS	1244638	1244672	0.87	+	0	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	exon	1244638	1244672	.	+	.	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	intron	1244673	1244750	.	+	.	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	CDS	1244751	1245495	0.24	+	1	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	exon	1244751	1245495	.	+	.	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	intron	1245496	1245712	.	+	.	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	CDS	1245713	1246039	0.54	+	0	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	exon	1245713	1246039	.	+	.	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
Ledus.C7	AUGUSTUS	stop_codon	1246040	1246042	.	+	0	transcript_id "Ledus.C7G013500.t1"; gene_id "Ledus.C7G013500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1869.t1 is derived from g8732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13047102	13047467	.	+	.	Ledus.S2G175100
Ledus.S2	AUGUSTUS	transcript	13047102	13047467	.	+	.	transcript_id "Ledus.S2G175100.t1"; gene_id "Ledus.S2G175100"
Ledus.S2	AUGUSTUS	start_codon	13047102	13047104	.	+	0	transcript_id "Ledus.S2G175100.t1"; gene_id "Ledus.S2G175100"
Ledus.S2	AUGUSTUS	CDS	13047102	13047467	0.69	+	0	transcript_id "Ledus.S2G175100.t1"; gene_id "Ledus.S2G175100"
Ledus.S2	AUGUSTUS	exon	13047102	13047467	.	+	.	transcript_id "Ledus.S2G175100.t1"; gene_id "Ledus.S2G175100"
Ledus.S2	AUGUSTUS	stop_codon	13047468	13047470	.	+	0	transcript_id "Ledus.S2G175100.t1"; gene_id "Ledus.S2G175100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5477.t1 is derived from g2916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24479549	24481476	.	-	.	Ledus.S1G289800
Ledus.S1	AUGUSTUS	transcript	24479549	24481476	.	-	.	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	stop_codon	24479546	24479548	.	-	0	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	CDS	24479549	24479635	0.98	-	0	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	exon	24479549	24479635	.	-	.	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	intron	24479636	24479728	.	-	.	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	CDS	24479729	24479771	0.79	-	1	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	exon	24479729	24479771	.	-	.	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	intron	24479772	24479877	.	-	.	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	CDS	24479878	24481278	0.4	-	1	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	exon	24479878	24481278	.	-	.	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	intron	24481279	24481375	.	-	.	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	CDS	24481376	24481476	0.8	-	0	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	exon	24481376	24481476	.	-	.	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
Ledus.S1	AUGUSTUS	start_codon	24481474	24481476	.	-	0	transcript_id "Ledus.S1G289800.t1"; gene_id "Ledus.S1G289800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3057.t1 is derived from g492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5581424	5584492	.	+	.	Ledus.S1G047800
Ledus.S1	AUGUSTUS	transcript	5581424	5584492	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	start_codon	5581424	5581426	.	+	0	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	CDS	5581424	5581453	0.27	+	0	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	exon	5581424	5581453	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	intron	5581454	5581536	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	CDS	5581537	5581544	0.49	+	0	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	exon	5581537	5581544	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	intron	5581545	5581616	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	CDS	5581617	5581639	0.58	+	1	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	exon	5581617	5581639	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	intron	5581640	5581887	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	CDS	5581888	5581964	0.47	+	2	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	exon	5581888	5581964	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	intron	5581965	5582057	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	CDS	5582058	5582214	0.58	+	0	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	exon	5582058	5582214	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	intron	5582215	5582349	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	CDS	5582350	5582566	1	+	2	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	exon	5582350	5582566	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	intron	5582567	5582854	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	CDS	5582855	5583081	1	+	1	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	exon	5582855	5583081	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	intron	5583082	5583272	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	CDS	5583273	5583488	1	+	2	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	exon	5583273	5583488	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	intron	5583489	5583611	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	CDS	5583612	5583813	1	+	2	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	exon	5583612	5583813	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	intron	5583814	5583911	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	CDS	5583912	5584081	0.99	+	1	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	exon	5583912	5584081	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	intron	5584082	5584184	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	CDS	5584185	5584492	0.96	+	2	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	exon	5584185	5584492	.	+	.	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
Ledus.S1	AUGUSTUS	stop_codon	5584493	5584495	.	+	0	transcript_id "Ledus.S1G047800.t1"; gene_id "Ledus.S1G047800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg720.t1 is derived from g7581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4459944	4460704	.	-	.	Ledus.S2G060200
Ledus.S2	AUGUSTUS	transcript	4459944	4460704	.	-	.	transcript_id "Ledus.S2G060200.t1"; gene_id "Ledus.S2G060200"
Ledus.S2	AUGUSTUS	stop_codon	4459941	4459943	.	-	0	transcript_id "Ledus.S2G060200.t1"; gene_id "Ledus.S2G060200"
Ledus.S2	AUGUSTUS	CDS	4459944	4460039	0.68	-	0	transcript_id "Ledus.S2G060200.t1"; gene_id "Ledus.S2G060200"
Ledus.S2	AUGUSTUS	exon	4459944	4460039	.	-	.	transcript_id "Ledus.S2G060200.t1"; gene_id "Ledus.S2G060200"
Ledus.S2	AUGUSTUS	intron	4460040	4460131	.	-	.	transcript_id "Ledus.S2G060200.t1"; gene_id "Ledus.S2G060200"
Ledus.S2	AUGUSTUS	CDS	4460132	4460704	0.33	-	0	transcript_id "Ledus.S2G060200.t1"; gene_id "Ledus.S2G060200"
Ledus.S2	AUGUSTUS	exon	4460132	4460704	.	-	.	transcript_id "Ledus.S2G060200.t1"; gene_id "Ledus.S2G060200"
Ledus.S2	AUGUSTUS	start_codon	4460702	4460704	.	-	0	transcript_id "Ledus.S2G060200.t1"; gene_id "Ledus.S2G060200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg170.t1 is derived from g7031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	525925	526812	.	+	.	Ledus.S2G005200
Ledus.S2	AUGUSTUS	transcript	525925	526812	.	+	.	transcript_id "Ledus.S2G005200.t1"; gene_id "Ledus.S2G005200"
Ledus.S2	AUGUSTUS	start_codon	525925	525927	.	+	0	transcript_id "Ledus.S2G005200.t1"; gene_id "Ledus.S2G005200"
Ledus.S2	AUGUSTUS	CDS	525925	526287	0.94	+	0	transcript_id "Ledus.S2G005200.t1"; gene_id "Ledus.S2G005200"
Ledus.S2	AUGUSTUS	exon	525925	526287	.	+	.	transcript_id "Ledus.S2G005200.t1"; gene_id "Ledus.S2G005200"
Ledus.S2	AUGUSTUS	intron	526288	526359	.	+	.	transcript_id "Ledus.S2G005200.t1"; gene_id "Ledus.S2G005200"
Ledus.S2	AUGUSTUS	CDS	526360	526812	0.94	+	0	transcript_id "Ledus.S2G005200.t1"; gene_id "Ledus.S2G005200"
Ledus.S2	AUGUSTUS	exon	526360	526812	.	+	.	transcript_id "Ledus.S2G005200.t1"; gene_id "Ledus.S2G005200"
Ledus.S2	AUGUSTUS	stop_codon	526813	526815	.	+	0	transcript_id "Ledus.S2G005200.t1"; gene_id "Ledus.S2G005200"
# This transcript jg3971.t2 is derived from g1407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3972.t1 is derived from g1408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13819234	13822182	.	+	.	Ledus.S1G139300
Ledus.S1	AUGUSTUS	transcript	13819234	13822182	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	start_codon	13819234	13819236	.	+	0	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	CDS	13819234	13819544	1	+	0	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	exon	13819234	13819544	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	intron	13819545	13819625	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	CDS	13819626	13819748	1	+	1	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	exon	13819626	13819748	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	intron	13819749	13819941	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	CDS	13819942	13819999	1	+	1	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	exon	13819942	13819999	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	intron	13820000	13820328	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	CDS	13820329	13820409	1	+	0	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	exon	13820329	13820409	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	intron	13820410	13820498	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	CDS	13820499	13820567	1	+	0	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	exon	13820499	13820567	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	intron	13820568	13820687	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	CDS	13820688	13820935	1	+	0	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	exon	13820688	13820935	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	intron	13820936	13821094	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	CDS	13821095	13821166	1	+	1	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	exon	13821095	13821166	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	intron	13821167	13821313	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	CDS	13821314	13821478	1	+	1	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	exon	13821314	13821478	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	intron	13821479	13821597	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	CDS	13821598	13821679	1	+	1	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	exon	13821598	13821679	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	intron	13821680	13821760	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	CDS	13821761	13821807	1	+	0	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	exon	13821761	13821807	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	intron	13821808	13821924	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	CDS	13821925	13822006	1	+	1	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	exon	13821925	13822006	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	intron	13822007	13822098	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	CDS	13822099	13822182	1	+	0	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	exon	13822099	13822182	.	+	.	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
Ledus.S1	AUGUSTUS	stop_codon	13822183	13822185	.	+	0	transcript_id "Ledus.S1G139300.t1"; gene_id "Ledus.S1G139300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7029.t1 is derived from g6560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	908335	910440	.	-	.	Ledus.C7G009000
Ledus.C7	AUGUSTUS	transcript	908335	910440	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	stop_codon	908332	908334	.	-	0	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	CDS	908335	908572	0.65	-	1	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	exon	908335	908572	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	intron	908573	908646	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	CDS	908647	908750	1	-	0	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	exon	908647	908750	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	intron	908751	908827	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	CDS	908828	909139	1	-	0	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	exon	908828	909139	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	intron	909140	909215	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	CDS	909216	909432	1	-	1	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	exon	909216	909432	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	intron	909433	909504	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	CDS	909505	909619	0.77	-	2	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	exon	909505	909619	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	intron	909620	909698	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	CDS	909699	909857	0.97	-	2	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	exon	909699	909857	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	intron	909858	909946	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	CDS	909947	910044	0.96	-	1	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	exon	909947	910044	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	intron	910045	910123	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	CDS	910124	910218	0.95	-	0	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	exon	910124	910218	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	intron	910219	910296	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	CDS	910297	910440	0.88	-	0	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	exon	910297	910440	.	-	.	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
Ledus.C7	AUGUSTUS	start_codon	910438	910440	.	-	0	transcript_id "Ledus.C7G009000.t1"; gene_id "Ledus.C7G009000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6241.t1 is derived from g3684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29813444	29815245	.	-	.	Ledus.S1G366200
Ledus.S1	AUGUSTUS	transcript	29813444	29815245	.	-	.	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	stop_codon	29813441	29813443	.	-	0	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	CDS	29813444	29813785	1	-	0	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	exon	29813444	29813785	.	-	.	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	intron	29813786	29813922	.	-	.	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	CDS	29813923	29814169	1	-	1	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	exon	29813923	29814169	.	-	.	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	intron	29814170	29814271	.	-	.	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	CDS	29814272	29814770	1	-	2	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	exon	29814272	29814770	.	-	.	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	intron	29814771	29815037	.	-	.	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	CDS	29815038	29815245	0.66	-	0	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	exon	29815038	29815245	.	-	.	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
Ledus.S1	AUGUSTUS	start_codon	29815243	29815245	.	-	0	transcript_id "Ledus.S1G366200.t1"; gene_id "Ledus.S1G366200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2937.t1 is derived from g372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4662136	4663104	.	-	.	Ledus.S1G035800
Ledus.S1	AUGUSTUS	transcript	4662136	4663104	.	-	.	transcript_id "Ledus.S1G035800.t1"; gene_id "Ledus.S1G035800"
Ledus.S1	AUGUSTUS	stop_codon	4662133	4662135	.	-	0	transcript_id "Ledus.S1G035800.t1"; gene_id "Ledus.S1G035800"
Ledus.S1	AUGUSTUS	CDS	4662136	4663104	0.48	-	0	transcript_id "Ledus.S1G035800.t1"; gene_id "Ledus.S1G035800"
Ledus.S1	AUGUSTUS	exon	4662136	4663104	.	-	.	transcript_id "Ledus.S1G035800.t1"; gene_id "Ledus.S1G035800"
Ledus.S1	AUGUSTUS	start_codon	4663102	4663104	.	-	0	transcript_id "Ledus.S1G035800.t1"; gene_id "Ledus.S1G035800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4913.t1 is derived from g2351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20607199	20607930	.	-	.	Ledus.S1G233400
Ledus.S1	AUGUSTUS	transcript	20607199	20607930	.	-	.	transcript_id "Ledus.S1G233400.t1"; gene_id "Ledus.S1G233400"
Ledus.S1	AUGUSTUS	stop_codon	20607196	20607198	.	-	0	transcript_id "Ledus.S1G233400.t1"; gene_id "Ledus.S1G233400"
Ledus.S1	AUGUSTUS	CDS	20607199	20607930	0.88	-	0	transcript_id "Ledus.S1G233400.t1"; gene_id "Ledus.S1G233400"
Ledus.S1	AUGUSTUS	exon	20607199	20607930	.	-	.	transcript_id "Ledus.S1G233400.t1"; gene_id "Ledus.S1G233400"
Ledus.S1	AUGUSTUS	start_codon	20607928	20607930	.	-	0	transcript_id "Ledus.S1G233400.t1"; gene_id "Ledus.S1G233400"
# This transcript jg1163.t2 is derived from g8024.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1164.t1 is derived from g8025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8033769	8036867	.	+	.	Ledus.S2G104600
Ledus.S2	AUGUSTUS	transcript	8033769	8036867	.	+	.	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	start_codon	8033769	8033771	.	+	0	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	CDS	8033769	8033793	0.58	+	0	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	exon	8033769	8033793	.	+	.	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	intron	8033794	8033926	.	+	.	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	CDS	8033927	8034199	0.64	+	2	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	exon	8033927	8034199	.	+	.	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	intron	8034200	8034294	.	+	.	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	CDS	8034295	8036119	1	+	2	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	exon	8034295	8036119	.	+	.	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	intron	8036120	8036522	.	+	.	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	CDS	8036523	8036531	0.69	+	1	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	exon	8036523	8036531	.	+	.	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	intron	8036532	8036629	.	+	.	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	CDS	8036630	8036773	0.42	+	1	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	exon	8036630	8036773	.	+	.	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	intron	8036774	8036860	.	+	.	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	CDS	8036861	8036867	0.7	+	1	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	exon	8036861	8036867	.	+	.	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
Ledus.S2	AUGUSTUS	stop_codon	8036868	8036870	.	+	0	transcript_id "Ledus.S2G104600.t1"; gene_id "Ledus.S2G104600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg303.t1 is derived from g7164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1513479	1515818	.	+	.	Ledus.S2G018500
Ledus.S2	AUGUSTUS	transcript	1513479	1515818	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	start_codon	1513479	1513481	.	+	0	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	CDS	1513479	1513883	0.99	+	0	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	exon	1513479	1513883	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	intron	1513884	1513963	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	CDS	1513964	1514074	1	+	0	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	exon	1513964	1514074	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	intron	1514075	1514169	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	CDS	1514170	1514666	1	+	0	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	exon	1514170	1514666	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	intron	1514667	1514878	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	CDS	1514879	1515047	1	+	1	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	exon	1514879	1515047	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	intron	1515048	1515142	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	CDS	1515143	1515382	1	+	0	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	exon	1515143	1515382	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	intron	1515383	1515464	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	CDS	1515465	1515599	1	+	0	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	exon	1515465	1515599	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	intron	1515600	1515692	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	CDS	1515693	1515818	0.97	+	0	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	exon	1515693	1515818	.	+	.	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
Ledus.S2	AUGUSTUS	stop_codon	1515819	1515821	.	+	0	transcript_id "Ledus.S2G018500.t1"; gene_id "Ledus.S2G018500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10287.t1 is derived from g11317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14087875	14088684	.	+	.	Ledus.S3G176400
Ledus.S3	AUGUSTUS	transcript	14087875	14088684	.	+	.	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	start_codon	14087875	14087877	.	+	0	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	CDS	14087875	14087977	0.99	+	0	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	exon	14087875	14087977	.	+	.	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	intron	14087978	14088075	.	+	.	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	CDS	14088076	14088230	1	+	2	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	exon	14088076	14088230	.	+	.	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	intron	14088231	14088318	.	+	.	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	CDS	14088319	14088405	1	+	0	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	exon	14088319	14088405	.	+	.	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	intron	14088406	14088489	.	+	.	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	CDS	14088490	14088684	0.88	+	0	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	exon	14088490	14088684	.	+	.	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
Ledus.S3	AUGUSTUS	stop_codon	14088685	14088687	.	+	0	transcript_id "Ledus.S3G176400.t1"; gene_id "Ledus.S3G176400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg6756.t1 is derived from g4199.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33784537	33786055	.	-	.	Ledus.S1G417700
Ledus.S1	AUGUSTUS	transcript	33784537	33785308	.	-	.	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	stop_codon	33784534	33784536	.	-	0	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33784537	33784638	0.97	-	0	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33784537	33784638	.	-	.	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	intron	33784639	33784793	.	-	.	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33784794	33784876	1	-	2	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33784794	33784876	.	-	.	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	intron	33784877	33785031	.	-	.	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33785032	33785074	1	-	0	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33785032	33785074	.	-	.	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	intron	33785075	33785302	.	-	.	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33785303	33785308	0.81	-	0	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33785303	33785308	.	-	.	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	start_codon	33785306	33785308	.	-	0	transcript_id "Ledus.S1G417700.t1"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	transcript	33785554	33786055	.	-	.	transcript_id "Ledus.S1G417700.t2"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	stop_codon	33785551	33785553	.	-	0	transcript_id "Ledus.S1G417700.t2"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33785554	33785577	0.91	-	0	transcript_id "Ledus.S1G417700.t2"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33785554	33785577	.	-	.	transcript_id "Ledus.S1G417700.t2"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	intron	33785578	33785665	.	-	.	transcript_id "Ledus.S1G417700.t2"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33785666	33785876	0.87	-	1	transcript_id "Ledus.S1G417700.t2"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33785666	33785876	.	-	.	transcript_id "Ledus.S1G417700.t2"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	intron	33785877	33785981	.	-	.	transcript_id "Ledus.S1G417700.t2"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33785982	33786055	0.87	-	0	transcript_id "Ledus.S1G417700.t2"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33785982	33786055	.	-	.	transcript_id "Ledus.S1G417700.t2"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	start_codon	33786053	33786055	.	-	0	transcript_id "Ledus.S1G417700.t2"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	transcript	33784537	33786055	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	stop_codon	33784534	33784536	.	-	0	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33784537	33784638	0.85	-	0	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33784537	33784638	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	intron	33784639	33784793	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33784794	33784876	0.28	-	2	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33784794	33784876	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	intron	33784877	33785031	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33785032	33785074	0.24	-	0	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33785032	33785074	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	intron	33785075	33785317	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33785318	33785356	0.26	-	0	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33785318	33785356	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	intron	33785357	33785456	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33785457	33785588	0.79	-	0	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33785457	33785588	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	intron	33785589	33785665	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33785666	33785876	0.83	-	1	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33785666	33785876	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	intron	33785877	33785981	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	CDS	33785982	33786055	0.81	-	0	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	exon	33785982	33786055	.	-	.	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
Ledus.S1	AUGUSTUS	start_codon	33786053	33786055	.	-	0	transcript_id "Ledus.S1G417700.t3"; gene_id "Ledus.S1G417700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2863.t1 is derived from g297.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4236820	4239837	.	-	.	Ledus.S1G028400
Ledus.S1	AUGUSTUS	transcript	4236820	4239837	.	-	.	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	stop_codon	4236817	4236819	.	-	0	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	CDS	4236820	4236832	0.98	-	1	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	exon	4236820	4236832	.	-	.	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	intron	4236833	4236927	.	-	.	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	CDS	4236928	4236960	0.98	-	1	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	exon	4236928	4236960	.	-	.	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	intron	4236961	4237157	.	-	.	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	CDS	4237158	4239284	0.96	-	1	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	exon	4237158	4239284	.	-	.	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	intron	4239285	4239446	.	-	.	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	CDS	4239447	4239573	0.99	-	2	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	exon	4239447	4239573	.	-	.	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	intron	4239574	4239716	.	-	.	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	CDS	4239717	4239837	0.57	-	0	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	exon	4239717	4239837	.	-	.	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	start_codon	4239835	4239837	.	-	0	transcript_id "Ledus.S1G028400.t1"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	transcript	4236820	4239837	.	-	.	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	stop_codon	4236817	4236819	.	-	0	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	CDS	4236820	4236832	1	-	1	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	exon	4236820	4236832	.	-	.	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	intron	4236833	4236927	.	-	.	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	CDS	4236928	4236960	1	-	1	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	exon	4236928	4236960	.	-	.	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	intron	4236961	4237157	.	-	.	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	CDS	4237158	4239284	0.96	-	1	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	exon	4237158	4239284	.	-	.	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	intron	4239285	4239446	.	-	.	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	CDS	4239447	4239585	0.96	-	2	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	exon	4239447	4239585	.	-	.	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	intron	4239586	4239716	.	-	.	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	CDS	4239717	4239837	0.45	-	0	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	exon	4239717	4239837	.	-	.	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
Ledus.S1	AUGUSTUS	start_codon	4239835	4239837	.	-	0	transcript_id "Ledus.S1G028400.t2"; gene_id "Ledus.S1G028400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9655.t1 is derived from g10685.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8841142	8843604	.	+	.	Ledus.S3G113200
Ledus.S3	AUGUSTUS	transcript	8841142	8841802	.	+	.	transcript_id "Ledus.S3G113200.t1"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	start_codon	8841142	8841144	.	+	0	transcript_id "Ledus.S3G113200.t1"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	CDS	8841142	8841724	0.98	+	0	transcript_id "Ledus.S3G113200.t1"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	exon	8841142	8841724	.	+	.	transcript_id "Ledus.S3G113200.t1"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	intron	8841725	8841791	.	+	.	transcript_id "Ledus.S3G113200.t1"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	CDS	8841792	8841802	0.98	+	2	transcript_id "Ledus.S3G113200.t1"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	exon	8841792	8841802	.	+	.	transcript_id "Ledus.S3G113200.t1"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	stop_codon	8841803	8841805	.	+	0	transcript_id "Ledus.S3G113200.t1"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	transcript	8841142	8843336	.	+	.	transcript_id "Ledus.S3G113200.t2"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	start_codon	8841142	8841144	.	+	0	transcript_id "Ledus.S3G113200.t2"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	CDS	8841142	8843130	0.5	+	0	transcript_id "Ledus.S3G113200.t2"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	exon	8841142	8843130	.	+	.	transcript_id "Ledus.S3G113200.t2"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	intron	8843131	8843216	.	+	.	transcript_id "Ledus.S3G113200.t2"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	CDS	8843217	8843336	0.75	+	0	transcript_id "Ledus.S3G113200.t2"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	exon	8843217	8843336	.	+	.	transcript_id "Ledus.S3G113200.t2"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	stop_codon	8843337	8843339	.	+	0	transcript_id "Ledus.S3G113200.t2"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	transcript	8841142	8843604	.	+	.	transcript_id "Ledus.S3G113200.t3"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	start_codon	8841142	8841144	.	+	0	transcript_id "Ledus.S3G113200.t3"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	CDS	8841142	8843604	1	+	0	transcript_id "Ledus.S3G113200.t3"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	exon	8841142	8843604	.	+	.	transcript_id "Ledus.S3G113200.t3"; gene_id "Ledus.S3G113200"
Ledus.S3	AUGUSTUS	stop_codon	8843605	8843607	.	+	0	transcript_id "Ledus.S3G113200.t3"; gene_id "Ledus.S3G113200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9409.t1 is derived from g10439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6591877	6592456	.	-	.	Ledus.S3G088600
Ledus.S3	AUGUSTUS	transcript	6591877	6592456	.	-	.	transcript_id "Ledus.S3G088600.t1"; gene_id "Ledus.S3G088600"
Ledus.S3	AUGUSTUS	stop_codon	6591874	6591876	.	-	0	transcript_id "Ledus.S3G088600.t1"; gene_id "Ledus.S3G088600"
Ledus.S3	AUGUSTUS	CDS	6591877	6591902	1	-	2	transcript_id "Ledus.S3G088600.t1"; gene_id "Ledus.S3G088600"
Ledus.S3	AUGUSTUS	exon	6591877	6591902	.	-	.	transcript_id "Ledus.S3G088600.t1"; gene_id "Ledus.S3G088600"
Ledus.S3	AUGUSTUS	intron	6591903	6592006	.	-	.	transcript_id "Ledus.S3G088600.t1"; gene_id "Ledus.S3G088600"
Ledus.S3	AUGUSTUS	CDS	6592007	6592076	0.95	-	0	transcript_id "Ledus.S3G088600.t1"; gene_id "Ledus.S3G088600"
Ledus.S3	AUGUSTUS	exon	6592007	6592076	.	-	.	transcript_id "Ledus.S3G088600.t1"; gene_id "Ledus.S3G088600"
Ledus.S3	AUGUSTUS	intron	6592077	6592261	.	-	.	transcript_id "Ledus.S3G088600.t1"; gene_id "Ledus.S3G088600"
Ledus.S3	AUGUSTUS	CDS	6592262	6592456	0.96	-	0	transcript_id "Ledus.S3G088600.t1"; gene_id "Ledus.S3G088600"
Ledus.S3	AUGUSTUS	exon	6592262	6592456	.	-	.	transcript_id "Ledus.S3G088600.t1"; gene_id "Ledus.S3G088600"
Ledus.S3	AUGUSTUS	start_codon	6592454	6592456	.	-	0	transcript_id "Ledus.S3G088600.t1"; gene_id "Ledus.S3G088600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4367.t1 is derived from g1803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16648280	16648818	.	+	.	Ledus.S1G178800
Ledus.S1	AUGUSTUS	transcript	16648280	16648818	.	+	.	transcript_id "Ledus.S1G178800.t1"; gene_id "Ledus.S1G178800"
Ledus.S1	AUGUSTUS	start_codon	16648280	16648282	.	+	0	transcript_id "Ledus.S1G178800.t1"; gene_id "Ledus.S1G178800"
Ledus.S1	AUGUSTUS	CDS	16648280	16648388	0.46	+	0	transcript_id "Ledus.S1G178800.t1"; gene_id "Ledus.S1G178800"
Ledus.S1	AUGUSTUS	exon	16648280	16648388	.	+	.	transcript_id "Ledus.S1G178800.t1"; gene_id "Ledus.S1G178800"
Ledus.S1	AUGUSTUS	intron	16648389	16648483	.	+	.	transcript_id "Ledus.S1G178800.t1"; gene_id "Ledus.S1G178800"
Ledus.S1	AUGUSTUS	CDS	16648484	16648818	0.29	+	2	transcript_id "Ledus.S1G178800.t1"; gene_id "Ledus.S1G178800"
Ledus.S1	AUGUSTUS	exon	16648484	16648818	.	+	.	transcript_id "Ledus.S1G178800.t1"; gene_id "Ledus.S1G178800"
Ledus.S1	AUGUSTUS	stop_codon	16648819	16648821	.	+	0	transcript_id "Ledus.S1G178800.t1"; gene_id "Ledus.S1G178800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2245.t1 is derived from g9108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16451658	16452280	.	-	.	Ledus.S2G212700
Ledus.S2	AUGUSTUS	transcript	16451674	16452280	.	-	.	transcript_id "Ledus.S2G212700.t1"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	stop_codon	16451671	16451673	.	-	0	transcript_id "Ledus.S2G212700.t1"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	CDS	16451674	16451780	0.99	-	2	transcript_id "Ledus.S2G212700.t1"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	exon	16451674	16451780	.	-	.	transcript_id "Ledus.S2G212700.t1"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	intron	16451781	16452009	.	-	.	transcript_id "Ledus.S2G212700.t1"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	CDS	16452010	16452066	1	-	2	transcript_id "Ledus.S2G212700.t1"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	exon	16452010	16452066	.	-	.	transcript_id "Ledus.S2G212700.t1"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	intron	16452067	16452171	.	-	.	transcript_id "Ledus.S2G212700.t1"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	CDS	16452172	16452280	0.99	-	0	transcript_id "Ledus.S2G212700.t1"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	exon	16452172	16452280	.	-	.	transcript_id "Ledus.S2G212700.t1"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	start_codon	16452278	16452280	.	-	0	transcript_id "Ledus.S2G212700.t1"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	transcript	16451658	16452280	.	-	.	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	stop_codon	16451655	16451657	.	-	0	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	CDS	16451658	16451780	0.97	-	0	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	exon	16451658	16451780	.	-	.	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	intron	16451781	16451859	.	-	.	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	CDS	16451860	16451906	0.87	-	2	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	exon	16451860	16451906	.	-	.	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	intron	16451907	16452009	.	-	.	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	CDS	16452010	16452066	0.82	-	2	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	exon	16452010	16452066	.	-	.	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	intron	16452067	16452171	.	-	.	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	CDS	16452172	16452280	0.98	-	0	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	exon	16452172	16452280	.	-	.	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
Ledus.S2	AUGUSTUS	start_codon	16452278	16452280	.	-	0	transcript_id "Ledus.S2G212700.t2"; gene_id "Ledus.S2G212700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3006.t1 is derived from g441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5261472	5262772	.	+	.	Ledus.S1G042700
Ledus.S1	AUGUSTUS	transcript	5261472	5262772	.	+	.	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	start_codon	5261472	5261474	.	+	0	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	CDS	5261472	5261808	0.82	+	0	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	exon	5261472	5261808	.	+	.	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	intron	5261809	5261893	.	+	.	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	CDS	5261894	5261947	1	+	2	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	exon	5261894	5261947	.	+	.	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	intron	5261948	5262038	.	+	.	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	CDS	5262039	5262094	1	+	2	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	exon	5262039	5262094	.	+	.	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	intron	5262095	5262218	.	+	.	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	CDS	5262219	5262347	1	+	0	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	exon	5262219	5262347	.	+	.	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	intron	5262348	5262444	.	+	.	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	CDS	5262445	5262576	1	+	0	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	exon	5262445	5262576	.	+	.	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	intron	5262577	5262658	.	+	.	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	CDS	5262659	5262772	1	+	0	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	exon	5262659	5262772	.	+	.	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	stop_codon	5262773	5262775	.	+	0	transcript_id "Ledus.S1G042700.t1"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	transcript	5261472	5262772	.	+	.	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	start_codon	5261472	5261474	.	+	0	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	CDS	5261472	5261808	0.82	+	0	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	exon	5261472	5261808	.	+	.	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	intron	5261809	5261876	.	+	.	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	CDS	5261877	5262094	1	+	2	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	exon	5261877	5262094	.	+	.	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	intron	5262095	5262218	.	+	.	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	CDS	5262219	5262347	1	+	0	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	exon	5262219	5262347	.	+	.	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	intron	5262348	5262444	.	+	.	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	CDS	5262445	5262576	1	+	0	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	exon	5262445	5262576	.	+	.	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	intron	5262577	5262658	.	+	.	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	CDS	5262659	5262772	1	+	0	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	exon	5262659	5262772	.	+	.	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
Ledus.S1	AUGUSTUS	stop_codon	5262773	5262775	.	+	0	transcript_id "Ledus.S1G042700.t2"; gene_id "Ledus.S1G042700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11686.t1 is derived from g5305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5976419	5978195	.	-	.	Ledus.S4G084200
Ledus.S4	AUGUSTUS	transcript	5976419	5978195	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	stop_codon	5976416	5976418	.	-	0	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	CDS	5976419	5976433	1	-	0	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	exon	5976419	5976433	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	intron	5976434	5976524	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	CDS	5976525	5976660	1	-	1	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	exon	5976525	5976660	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	intron	5976661	5976757	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	CDS	5976758	5976909	1	-	0	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	exon	5976758	5976909	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	intron	5976910	5976995	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	CDS	5976996	5977154	1	-	0	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	exon	5976996	5977154	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	intron	5977155	5977232	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	CDS	5977233	5977527	0.99	-	1	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	exon	5977233	5977527	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	intron	5977528	5977615	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	CDS	5977616	5977732	1	-	1	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	exon	5977616	5977732	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	intron	5977733	5977812	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	CDS	5977813	5977875	1	-	1	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	exon	5977813	5977875	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	intron	5977876	5977959	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	CDS	5977960	5978195	0.84	-	0	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	exon	5977960	5978195	.	-	.	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
Ledus.S4	AUGUSTUS	start_codon	5978193	5978195	.	-	0	transcript_id "Ledus.S4G084200.t1"; gene_id "Ledus.S4G084200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1483.t1 is derived from g8344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10521605	10527363	.	+	.	Ledus.S2G136500
Ledus.S2	AUGUSTUS	transcript	10521605	10527363	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	start_codon	10521605	10521607	.	+	0	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	CDS	10521605	10521774	0.65	+	0	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	exon	10521605	10521774	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	intron	10521775	10521853	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	CDS	10521854	10521968	1	+	1	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	exon	10521854	10521968	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	intron	10521969	10522194	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	CDS	10522195	10522260	1	+	0	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	exon	10522195	10522260	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	intron	10522261	10522355	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	CDS	10522356	10522444	1	+	0	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	exon	10522356	10522444	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	intron	10522445	10522538	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	CDS	10522539	10522626	1	+	1	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	exon	10522539	10522626	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	intron	10522627	10522756	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	CDS	10522757	10522894	1	+	0	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	exon	10522757	10522894	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	intron	10522895	10523039	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	CDS	10523040	10523132	1	+	0	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	exon	10523040	10523132	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	intron	10523133	10523292	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	CDS	10523293	10523394	1	+	0	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	exon	10523293	10523394	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	intron	10523395	10523480	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	CDS	10523481	10524049	0.43	+	0	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	exon	10523481	10524049	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	intron	10524050	10524316	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	CDS	10524317	10524417	0.28	+	1	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	exon	10524317	10524417	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	intron	10524418	10524585	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	CDS	10524586	10524656	0.32	+	2	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	exon	10524586	10524656	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	intron	10524657	10524750	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	CDS	10524751	10527363	0.85	+	0	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	exon	10524751	10527363	.	+	.	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
Ledus.S2	AUGUSTUS	stop_codon	10527364	10527366	.	+	0	transcript_id "Ledus.S2G136500.t1"; gene_id "Ledus.S2G136500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9216.t1 is derived from g10246.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5443975	5444431	.	+	.	Ledus.S3G069300
Ledus.S3	AUGUSTUS	transcript	5443975	5444431	.	+	.	transcript_id "Ledus.S3G069300.t1"; gene_id "Ledus.S3G069300"
Ledus.S3	AUGUSTUS	start_codon	5443975	5443977	.	+	0	transcript_id "Ledus.S3G069300.t1"; gene_id "Ledus.S3G069300"
Ledus.S3	AUGUSTUS	CDS	5443975	5444088	0.72	+	0	transcript_id "Ledus.S3G069300.t1"; gene_id "Ledus.S3G069300"
Ledus.S3	AUGUSTUS	exon	5443975	5444088	.	+	.	transcript_id "Ledus.S3G069300.t1"; gene_id "Ledus.S3G069300"
Ledus.S3	AUGUSTUS	intron	5444089	5444170	.	+	.	transcript_id "Ledus.S3G069300.t1"; gene_id "Ledus.S3G069300"
Ledus.S3	AUGUSTUS	CDS	5444171	5444431	0.6	+	0	transcript_id "Ledus.S3G069300.t1"; gene_id "Ledus.S3G069300"
Ledus.S3	AUGUSTUS	exon	5444171	5444431	.	+	.	transcript_id "Ledus.S3G069300.t1"; gene_id "Ledus.S3G069300"
Ledus.S3	AUGUSTUS	stop_codon	5444432	5444434	.	+	0	transcript_id "Ledus.S3G069300.t1"; gene_id "Ledus.S3G069300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12301.t1 is derived from g5921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11109415	11114612	.	-	.	Ledus.S4G145700
Ledus.S4	AUGUSTUS	transcript	11109415	11114612	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	stop_codon	11109412	11109414	.	-	0	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	CDS	11109415	11110086	0.76	-	0	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	exon	11109415	11110086	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	intron	11110087	11110294	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	CDS	11110295	11110489	1	-	0	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	exon	11110295	11110489	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	intron	11110490	11110685	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	CDS	11110686	11110765	0.99	-	2	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	exon	11110686	11110765	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	intron	11110766	11110897	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	CDS	11110898	11111282	0.93	-	0	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	exon	11110898	11111282	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	intron	11111283	11111484	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	CDS	11111485	11112163	1	-	1	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	exon	11111485	11112163	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	intron	11112164	11112365	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	CDS	11112366	11112601	0.75	-	0	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	exon	11112366	11112601	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	intron	11112602	11114381	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	CDS	11114382	11114612	0.45	-	0	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	exon	11114382	11114612	.	-	.	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
Ledus.S4	AUGUSTUS	start_codon	11114610	11114612	.	-	0	transcript_id "Ledus.S4G145700.t1"; gene_id "Ledus.S4G145700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7375.t1 is derived from g12046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1755625	1756146	.	-	.	Ledus.S5G015300
Ledus.S5	AUGUSTUS	transcript	1755749	1756146	.	-	.	transcript_id "Ledus.S5G015300.t1"; gene_id "Ledus.S5G015300"
Ledus.S5	AUGUSTUS	stop_codon	1755746	1755748	.	-	0	transcript_id "Ledus.S5G015300.t1"; gene_id "Ledus.S5G015300"
Ledus.S5	AUGUSTUS	CDS	1755749	1755769	0.98	-	0	transcript_id "Ledus.S5G015300.t1"; gene_id "Ledus.S5G015300"
Ledus.S5	AUGUSTUS	exon	1755749	1755769	.	-	.	transcript_id "Ledus.S5G015300.t1"; gene_id "Ledus.S5G015300"
Ledus.S5	AUGUSTUS	intron	1755770	1755849	.	-	.	transcript_id "Ledus.S5G015300.t1"; gene_id "Ledus.S5G015300"
Ledus.S5	AUGUSTUS	CDS	1755850	1756146	0.97	-	0	transcript_id "Ledus.S5G015300.t1"; gene_id "Ledus.S5G015300"
Ledus.S5	AUGUSTUS	exon	1755850	1756146	.	-	.	transcript_id "Ledus.S5G015300.t1"; gene_id "Ledus.S5G015300"
Ledus.S5	AUGUSTUS	start_codon	1756144	1756146	.	-	0	transcript_id "Ledus.S5G015300.t1"; gene_id "Ledus.S5G015300"
Ledus.S5	AUGUSTUS	transcript	1755625	1756146	.	-	.	transcript_id "Ledus.S5G015300.t2"; gene_id "Ledus.S5G015300"
Ledus.S5	AUGUSTUS	stop_codon	1755622	1755624	.	-	0	transcript_id "Ledus.S5G015300.t2"; gene_id "Ledus.S5G015300"
Ledus.S5	AUGUSTUS	CDS	1755625	1756146	0.96	-	0	transcript_id "Ledus.S5G015300.t2"; gene_id "Ledus.S5G015300"
Ledus.S5	AUGUSTUS	exon	1755625	1756146	.	-	.	transcript_id "Ledus.S5G015300.t2"; gene_id "Ledus.S5G015300"
Ledus.S5	AUGUSTUS	start_codon	1756144	1756146	.	-	0	transcript_id "Ledus.S5G015300.t2"; gene_id "Ledus.S5G015300"
# This transcript jg778.t2 is derived from g7639.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg779.t1 is derived from g7640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5043159	5045224	.	-	.	Ledus.S2G066100
Ledus.S2	AUGUSTUS	transcript	5043159	5045224	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	stop_codon	5043156	5043158	.	-	0	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	CDS	5043159	5043485	1	-	0	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	exon	5043159	5043485	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	intron	5043486	5043596	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	CDS	5043597	5043760	1	-	2	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	exon	5043597	5043760	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	intron	5043761	5043854	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	CDS	5043855	5043960	1	-	0	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	exon	5043855	5043960	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	intron	5043961	5044058	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	CDS	5044059	5044223	0.99	-	0	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	exon	5044059	5044223	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	intron	5044224	5044314	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	CDS	5044315	5044410	0.99	-	0	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	exon	5044315	5044410	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	intron	5044411	5044496	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	CDS	5044497	5044910	0.99	-	0	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	exon	5044497	5044910	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	intron	5044911	5044990	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	CDS	5044991	5045224	0.76	-	0	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	exon	5044991	5045224	.	-	.	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
Ledus.S2	AUGUSTUS	start_codon	5045222	5045224	.	-	0	transcript_id "Ledus.S2G066100.t1"; gene_id "Ledus.S2G066100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2648.t1 is derived from g81.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1147964	1148197	.	-	.	Ledus.S1G006900
Ledus.S1	AUGUSTUS	transcript	1147964	1148197	.	-	.	transcript_id "Ledus.S1G006900.t1"; gene_id "Ledus.S1G006900"
Ledus.S1	AUGUSTUS	stop_codon	1147961	1147963	.	-	0	transcript_id "Ledus.S1G006900.t1"; gene_id "Ledus.S1G006900"
Ledus.S1	AUGUSTUS	CDS	1147964	1148197	0.97	-	0	transcript_id "Ledus.S1G006900.t1"; gene_id "Ledus.S1G006900"
Ledus.S1	AUGUSTUS	exon	1147964	1148197	.	-	.	transcript_id "Ledus.S1G006900.t1"; gene_id "Ledus.S1G006900"
Ledus.S1	AUGUSTUS	start_codon	1148195	1148197	.	-	0	transcript_id "Ledus.S1G006900.t1"; gene_id "Ledus.S1G006900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg13136.t1 is derived from g6946.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6805112	6805627	.	-	.	Ledus.S6G019800
Ledus.S6	AUGUSTUS	transcript	6805112	6805463	.	-	.	transcript_id "Ledus.S6G019800.t1"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	stop_codon	6805109	6805111	.	-	0	transcript_id "Ledus.S6G019800.t1"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	CDS	6805112	6805210	0.82	-	0	transcript_id "Ledus.S6G019800.t1"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	exon	6805112	6805210	.	-	.	transcript_id "Ledus.S6G019800.t1"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	intron	6805211	6805313	.	-	.	transcript_id "Ledus.S6G019800.t1"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	CDS	6805314	6805463	0.33	-	0	transcript_id "Ledus.S6G019800.t1"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	exon	6805314	6805463	.	-	.	transcript_id "Ledus.S6G019800.t1"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	start_codon	6805461	6805463	.	-	0	transcript_id "Ledus.S6G019800.t1"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	transcript	6805112	6805627	.	-	.	transcript_id "Ledus.S6G019800.t2"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	stop_codon	6805109	6805111	.	-	0	transcript_id "Ledus.S6G019800.t2"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	CDS	6805112	6805210	0.87	-	0	transcript_id "Ledus.S6G019800.t2"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	exon	6805112	6805210	.	-	.	transcript_id "Ledus.S6G019800.t2"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	intron	6805211	6805399	.	-	.	transcript_id "Ledus.S6G019800.t2"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	CDS	6805400	6805627	0.32	-	0	transcript_id "Ledus.S6G019800.t2"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	exon	6805400	6805627	.	-	.	transcript_id "Ledus.S6G019800.t2"; gene_id "Ledus.S6G019800"
Ledus.S6	AUGUSTUS	start_codon	6805625	6805627	.	-	0	transcript_id "Ledus.S6G019800.t2"; gene_id "Ledus.S6G019800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4856.t1 is derived from g2294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20229726	20230463	.	+	.	Ledus.S1G227700
Ledus.S1	AUGUSTUS	transcript	20229726	20230463	.	+	.	transcript_id "Ledus.S1G227700.t1"; gene_id "Ledus.S1G227700"
Ledus.S1	AUGUSTUS	start_codon	20229726	20229728	.	+	0	transcript_id "Ledus.S1G227700.t1"; gene_id "Ledus.S1G227700"
Ledus.S1	AUGUSTUS	CDS	20229726	20230463	0.98	+	0	transcript_id "Ledus.S1G227700.t1"; gene_id "Ledus.S1G227700"
Ledus.S1	AUGUSTUS	exon	20229726	20230463	.	+	.	transcript_id "Ledus.S1G227700.t1"; gene_id "Ledus.S1G227700"
Ledus.S1	AUGUSTUS	stop_codon	20230464	20230466	.	+	0	transcript_id "Ledus.S1G227700.t1"; gene_id "Ledus.S1G227700"
# This transcript jg3188.t2 is derived from g623.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3189.t1 is derived from g624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6672693	6673305	.	+	.	Ledus.S1G061000
Ledus.S1	AUGUSTUS	transcript	6672693	6673305	.	+	.	transcript_id "Ledus.S1G061000.t1"; gene_id "Ledus.S1G061000"
Ledus.S1	AUGUSTUS	start_codon	6672693	6672695	.	+	0	transcript_id "Ledus.S1G061000.t1"; gene_id "Ledus.S1G061000"
Ledus.S1	AUGUSTUS	CDS	6672693	6673121	0.39	+	0	transcript_id "Ledus.S1G061000.t1"; gene_id "Ledus.S1G061000"
Ledus.S1	AUGUSTUS	exon	6672693	6673121	.	+	.	transcript_id "Ledus.S1G061000.t1"; gene_id "Ledus.S1G061000"
Ledus.S1	AUGUSTUS	intron	6673122	6673212	.	+	.	transcript_id "Ledus.S1G061000.t1"; gene_id "Ledus.S1G061000"
Ledus.S1	AUGUSTUS	CDS	6673213	6673305	0.49	+	0	transcript_id "Ledus.S1G061000.t1"; gene_id "Ledus.S1G061000"
Ledus.S1	AUGUSTUS	exon	6673213	6673305	.	+	.	transcript_id "Ledus.S1G061000.t1"; gene_id "Ledus.S1G061000"
Ledus.S1	AUGUSTUS	stop_codon	6673306	6673308	.	+	0	transcript_id "Ledus.S1G061000.t1"; gene_id "Ledus.S1G061000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3792.t1 is derived from g1228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12201136	12204290	.	-	.	Ledus.S1G121300
Ledus.S1	AUGUSTUS	transcript	12201136	12204290	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	stop_codon	12201133	12201135	.	-	0	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	CDS	12201136	12201243	0.97	-	0	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	exon	12201136	12201243	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	intron	12201244	12201343	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	CDS	12201344	12201450	1	-	2	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	exon	12201344	12201450	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	intron	12201451	12201532	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	CDS	12201533	12201656	1	-	0	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	exon	12201533	12201656	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	intron	12201657	12201744	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	CDS	12201745	12201910	1	-	1	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	exon	12201745	12201910	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	intron	12201911	12202065	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	CDS	12202066	12202140	1	-	1	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	exon	12202066	12202140	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	intron	12202141	12202442	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	CDS	12202443	12202504	1	-	0	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	exon	12202443	12202504	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	intron	12202505	12202658	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	CDS	12202659	12202724	1	-	0	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	exon	12202659	12202724	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	intron	12202725	12203093	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	CDS	12203094	12203138	1	-	0	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	exon	12203094	12203138	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	intron	12203139	12203347	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	CDS	12203348	12203670	0.34	-	2	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	exon	12203348	12203670	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	intron	12203671	12203831	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	CDS	12203832	12203898	0.58	-	0	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	exon	12203832	12203898	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	intron	12203899	12203990	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	CDS	12203991	12204290	0.27	-	0	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	exon	12203991	12204290	.	-	.	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
Ledus.S1	AUGUSTUS	start_codon	12204288	12204290	.	-	0	transcript_id "Ledus.S1G121300.t1"; gene_id "Ledus.S1G121300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5952.t1 is derived from g3395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28026908	28029310	.	-	.	Ledus.S1G337300
Ledus.S1	AUGUSTUS	transcript	28026908	28029310	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	stop_codon	28026905	28026907	.	-	0	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28026908	28027028	1	-	1	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28026908	28027028	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28027029	28027117	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28027118	28027231	1	-	1	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28027118	28027231	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28027232	28027358	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28027359	28027468	0.99	-	0	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28027359	28027468	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28027469	28027584	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28027585	28027638	0.98	-	0	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28027585	28027638	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28027639	28027710	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28027711	28027901	0.99	-	2	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28027711	28027901	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28027902	28027995	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28027996	28028153	1	-	1	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28027996	28028153	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28028154	28028340	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28028341	28028457	1	-	1	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28028341	28028457	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28028458	28028556	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28028557	28028673	1	-	1	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28028557	28028673	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28028674	28028764	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28028765	28028895	1	-	0	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28028765	28028895	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28028896	28028997	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28028998	28029045	0.85	-	0	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28028998	28029045	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28029046	28029151	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28029152	28029310	0.73	-	0	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28029152	28029310	.	-	.	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	start_codon	28029308	28029310	.	-	0	transcript_id "Ledus.S1G337300.t1"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	transcript	28026908	28029310	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	stop_codon	28026905	28026907	.	-	0	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28026908	28027028	1	-	1	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28026908	28027028	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28027029	28027117	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28027118	28027231	1	-	1	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28027118	28027231	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28027232	28027358	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28027359	28027468	0.99	-	0	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28027359	28027468	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28027469	28027584	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28027585	28027638	0.96	-	0	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28027585	28027638	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28027639	28027731	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28027732	28027901	1	-	2	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28027732	28027901	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28027902	28027995	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28027996	28028153	1	-	1	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28027996	28028153	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28028154	28028340	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28028341	28028457	1	-	1	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28028341	28028457	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28028458	28028556	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28028557	28028673	1	-	1	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28028557	28028673	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28028674	28028764	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28028765	28028895	0.99	-	0	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28028765	28028895	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28028896	28028997	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28028998	28029045	0.86	-	0	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28028998	28029045	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	intron	28029046	28029151	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	CDS	28029152	28029310	0.66	-	0	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	exon	28029152	28029310	.	-	.	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
Ledus.S1	AUGUSTUS	start_codon	28029308	28029310	.	-	0	transcript_id "Ledus.S1G337300.t2"; gene_id "Ledus.S1G337300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2211.t1 is derived from g9074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16083289	16083618	.	+	.	Ledus.S2G209300
Ledus.S2	AUGUSTUS	transcript	16083289	16083618	.	+	.	transcript_id "Ledus.S2G209300.t1"; gene_id "Ledus.S2G209300"
Ledus.S2	AUGUSTUS	start_codon	16083289	16083291	.	+	0	transcript_id "Ledus.S2G209300.t1"; gene_id "Ledus.S2G209300"
Ledus.S2	AUGUSTUS	CDS	16083289	16083618	0.72	+	0	transcript_id "Ledus.S2G209300.t1"; gene_id "Ledus.S2G209300"
Ledus.S2	AUGUSTUS	exon	16083289	16083618	.	+	.	transcript_id "Ledus.S2G209300.t1"; gene_id "Ledus.S2G209300"
Ledus.S2	AUGUSTUS	stop_codon	16083619	16083621	.	+	0	transcript_id "Ledus.S2G209300.t1"; gene_id "Ledus.S2G209300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1322.t1 is derived from g8183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9250060	9253658	.	-	.	Ledus.S2G120400
Ledus.S2	AUGUSTUS	transcript	9250060	9253658	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	stop_codon	9250057	9250059	.	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9250060	9250230	1	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9250060	9250230	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9250231	9250318	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9250319	9250441	1	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9250319	9250441	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9250442	9250531	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9250532	9250656	1	-	2	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9250532	9250656	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9250657	9250736	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9250737	9250860	1	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9250737	9250860	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9250861	9250958	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9250959	9251012	1	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9250959	9251012	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9251013	9251089	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9251090	9251182	1	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9251090	9251182	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9251183	9251267	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9251268	9251363	1	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9251268	9251363	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9251364	9251465	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9251466	9251535	1	-	1	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9251466	9251535	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9251536	9251628	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9251629	9251771	1	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9251629	9251771	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9251772	9251911	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9251912	9252055	1	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9251912	9252055	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9252056	9252195	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9252196	9252351	1	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9252196	9252351	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9252352	9252451	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9252452	9252502	1	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9252452	9252502	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9252503	9252592	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9252593	9252741	1	-	2	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9252593	9252741	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9252742	9252877	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9252878	9253051	0.99	-	2	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9252878	9253051	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9253052	9253158	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9253159	9253374	0.69	-	2	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9253159	9253374	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	intron	9253375	9253510	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	CDS	9253511	9253658	0.7	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	exon	9253511	9253658	.	-	.	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
Ledus.S2	AUGUSTUS	start_codon	9253656	9253658	.	-	0	transcript_id "Ledus.S2G120400.t1"; gene_id "Ledus.S2G120400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1057.t1 is derived from g7918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7038889	7039269	.	+	.	Ledus.S2G093900
Ledus.S2	AUGUSTUS	transcript	7038889	7039269	.	+	.	transcript_id "Ledus.S2G093900.t1"; gene_id "Ledus.S2G093900"
Ledus.S2	AUGUSTUS	start_codon	7038889	7038891	.	+	0	transcript_id "Ledus.S2G093900.t1"; gene_id "Ledus.S2G093900"
Ledus.S2	AUGUSTUS	CDS	7038889	7039269	0.66	+	0	transcript_id "Ledus.S2G093900.t1"; gene_id "Ledus.S2G093900"
Ledus.S2	AUGUSTUS	exon	7038889	7039269	.	+	.	transcript_id "Ledus.S2G093900.t1"; gene_id "Ledus.S2G093900"
Ledus.S2	AUGUSTUS	stop_codon	7039270	7039272	.	+	0	transcript_id "Ledus.S2G093900.t1"; gene_id "Ledus.S2G093900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2775.t1 is derived from g209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3440003	3440290	.	-	.	Ledus.S1G019600
Ledus.S1	AUGUSTUS	transcript	3440003	3440290	.	-	.	transcript_id "Ledus.S1G019600.t1"; gene_id "Ledus.S1G019600"
Ledus.S1	AUGUSTUS	stop_codon	3440000	3440002	.	-	0	transcript_id "Ledus.S1G019600.t1"; gene_id "Ledus.S1G019600"
Ledus.S1	AUGUSTUS	CDS	3440003	3440290	0.96	-	0	transcript_id "Ledus.S1G019600.t1"; gene_id "Ledus.S1G019600"
Ledus.S1	AUGUSTUS	exon	3440003	3440290	.	-	.	transcript_id "Ledus.S1G019600.t1"; gene_id "Ledus.S1G019600"
Ledus.S1	AUGUSTUS	start_codon	3440288	3440290	.	-	0	transcript_id "Ledus.S1G019600.t1"; gene_id "Ledus.S1G019600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12709.t1 is derived from g6331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14017838	14020994	.	+	.	Ledus.S4G186500
Ledus.S4	AUGUSTUS	transcript	14017838	14020994	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	start_codon	14017838	14017840	.	+	0	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	CDS	14017838	14019451	0.91	+	0	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	exon	14017838	14019451	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	intron	14019452	14019551	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	CDS	14019552	14019641	1	+	0	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	exon	14019552	14019641	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	intron	14019642	14019716	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	CDS	14019717	14019785	1	+	0	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	exon	14019717	14019785	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	intron	14019786	14019882	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	CDS	14019883	14020023	1	+	0	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	exon	14019883	14020023	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	intron	14020024	14020111	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	CDS	14020112	14020160	1	+	0	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	exon	14020112	14020160	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	intron	14020161	14020270	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	CDS	14020271	14020374	1	+	2	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	exon	14020271	14020374	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	intron	14020375	14020463	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	CDS	14020464	14020994	1	+	0	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	exon	14020464	14020994	.	+	.	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
Ledus.S4	AUGUSTUS	stop_codon	14020995	14020997	.	+	0	transcript_id "Ledus.S4G186500.t1"; gene_id "Ledus.S4G186500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1265.t1 is derived from g8126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8974957	8976782	.	+	.	Ledus.S2G114700
Ledus.S2	AUGUSTUS	transcript	8974957	8976782	.	+	.	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	start_codon	8974957	8974959	.	+	0	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	CDS	8974957	8975241	0.39	+	0	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	exon	8974957	8975241	.	+	.	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	intron	8975242	8975441	.	+	.	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	CDS	8975442	8975695	0.93	+	0	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	exon	8975442	8975695	.	+	.	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	intron	8975696	8975766	.	+	.	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	CDS	8975767	8976101	1	+	1	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	exon	8975767	8976101	.	+	.	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	intron	8976102	8976216	.	+	.	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	CDS	8976217	8976782	0.98	+	2	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	exon	8976217	8976782	.	+	.	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
Ledus.S2	AUGUSTUS	stop_codon	8976783	8976785	.	+	0	transcript_id "Ledus.S2G114700.t1"; gene_id "Ledus.S2G114700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8773.t1 is derived from g9803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1906760	1908022	.	+	.	Ledus.S3G025000
Ledus.S3	AUGUSTUS	transcript	1907324	1908022	.	+	.	transcript_id "Ledus.S3G025000.t1"; gene_id "Ledus.S3G025000"
Ledus.S3	AUGUSTUS	start_codon	1907324	1907326	.	+	0	transcript_id "Ledus.S3G025000.t1"; gene_id "Ledus.S3G025000"
Ledus.S3	AUGUSTUS	CDS	1907324	1908022	0.81	+	0	transcript_id "Ledus.S3G025000.t1"; gene_id "Ledus.S3G025000"
Ledus.S3	AUGUSTUS	exon	1907324	1908022	.	+	.	transcript_id "Ledus.S3G025000.t1"; gene_id "Ledus.S3G025000"
Ledus.S3	AUGUSTUS	stop_codon	1908023	1908025	.	+	0	transcript_id "Ledus.S3G025000.t1"; gene_id "Ledus.S3G025000"
Ledus.S3	AUGUSTUS	transcript	1906760	1908022	.	+	.	transcript_id "Ledus.S3G025000.t2"; gene_id "Ledus.S3G025000"
Ledus.S3	AUGUSTUS	start_codon	1906760	1906762	.	+	0	transcript_id "Ledus.S3G025000.t2"; gene_id "Ledus.S3G025000"
Ledus.S3	AUGUSTUS	CDS	1906760	1908022	0.8	+	0	transcript_id "Ledus.S3G025000.t2"; gene_id "Ledus.S3G025000"
Ledus.S3	AUGUSTUS	exon	1906760	1908022	.	+	.	transcript_id "Ledus.S3G025000.t2"; gene_id "Ledus.S3G025000"
Ledus.S3	AUGUSTUS	stop_codon	1908023	1908025	.	+	0	transcript_id "Ledus.S3G025000.t2"; gene_id "Ledus.S3G025000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12206.t1 is derived from g5825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10366714	10367013	.	+	.	Ledus.S4G136200
Ledus.S4	AUGUSTUS	transcript	10366714	10367013	.	+	.	transcript_id "Ledus.S4G136200.t1"; gene_id "Ledus.S4G136200"
Ledus.S4	AUGUSTUS	start_codon	10366714	10366716	.	+	0	transcript_id "Ledus.S4G136200.t1"; gene_id "Ledus.S4G136200"
Ledus.S4	AUGUSTUS	CDS	10366714	10367013	1	+	0	transcript_id "Ledus.S4G136200.t1"; gene_id "Ledus.S4G136200"
Ledus.S4	AUGUSTUS	exon	10366714	10367013	.	+	.	transcript_id "Ledus.S4G136200.t1"; gene_id "Ledus.S4G136200"
Ledus.S4	AUGUSTUS	stop_codon	10367014	10367016	.	+	0	transcript_id "Ledus.S4G136200.t1"; gene_id "Ledus.S4G136200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9062.t1 is derived from g10092.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4305386	4307517	.	-	.	Ledus.S3G053900
Ledus.S3	AUGUSTUS	transcript	4305386	4307517	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	stop_codon	4305383	4305385	.	-	0	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	CDS	4305386	4305679	1	-	0	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	exon	4305386	4305679	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	intron	4305680	4305757	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	CDS	4305758	4305868	1	-	0	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	exon	4305758	4305868	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	intron	4305869	4306002	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	CDS	4306003	4306188	1	-	0	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	exon	4306003	4306188	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	intron	4306189	4306295	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	CDS	4306296	4306439	1	-	0	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	exon	4306296	4306439	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	intron	4306440	4306543	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	CDS	4306544	4306785	1	-	2	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	exon	4306544	4306785	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	intron	4306786	4306917	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	CDS	4306918	4306984	1	-	0	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	exon	4306918	4306984	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	intron	4306985	4307067	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	CDS	4307068	4307189	1	-	2	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	exon	4307068	4307189	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	intron	4307190	4307279	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	CDS	4307280	4307517	0.55	-	0	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	exon	4307280	4307517	.	-	.	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
Ledus.S3	AUGUSTUS	start_codon	4307515	4307517	.	-	0	transcript_id "Ledus.S3G053900.t1"; gene_id "Ledus.S3G053900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12181.t1 is derived from g5800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10184525	10184860	.	+	.	Ledus.S4G133700
Ledus.S4	AUGUSTUS	transcript	10184525	10184860	.	+	.	transcript_id "Ledus.S4G133700.t1"; gene_id "Ledus.S4G133700"
Ledus.S4	AUGUSTUS	start_codon	10184525	10184527	.	+	0	transcript_id "Ledus.S4G133700.t1"; gene_id "Ledus.S4G133700"
Ledus.S4	AUGUSTUS	CDS	10184525	10184860	0.29	+	0	transcript_id "Ledus.S4G133700.t1"; gene_id "Ledus.S4G133700"
Ledus.S4	AUGUSTUS	exon	10184525	10184860	.	+	.	transcript_id "Ledus.S4G133700.t1"; gene_id "Ledus.S4G133700"
Ledus.S4	AUGUSTUS	stop_codon	10184861	10184863	.	+	0	transcript_id "Ledus.S4G133700.t1"; gene_id "Ledus.S4G133700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6506.t1 is derived from g3949.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31758854	31759060	.	-	.	Ledus.S1G392700
Ledus.S1	AUGUSTUS	transcript	31758854	31759060	.	-	.	transcript_id "Ledus.S1G392700.t1"; gene_id "Ledus.S1G392700"
Ledus.S1	AUGUSTUS	stop_codon	31758851	31758853	.	-	0	transcript_id "Ledus.S1G392700.t1"; gene_id "Ledus.S1G392700"
Ledus.S1	AUGUSTUS	CDS	31758854	31759060	0.7	-	0	transcript_id "Ledus.S1G392700.t1"; gene_id "Ledus.S1G392700"
Ledus.S1	AUGUSTUS	exon	31758854	31759060	.	-	.	transcript_id "Ledus.S1G392700.t1"; gene_id "Ledus.S1G392700"
Ledus.S1	AUGUSTUS	start_codon	31759058	31759060	.	-	0	transcript_id "Ledus.S1G392700.t1"; gene_id "Ledus.S1G392700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12987.t1 is derived from g6797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1811492	1811824	.	+	.	Ledus.S6G004900
Ledus.S6	AUGUSTUS	transcript	1811492	1811824	.	+	.	transcript_id "Ledus.S6G004900.t1"; gene_id "Ledus.S6G004900"
Ledus.S6	AUGUSTUS	start_codon	1811492	1811494	.	+	0	transcript_id "Ledus.S6G004900.t1"; gene_id "Ledus.S6G004900"
Ledus.S6	AUGUSTUS	CDS	1811492	1811548	0.65	+	0	transcript_id "Ledus.S6G004900.t1"; gene_id "Ledus.S6G004900"
Ledus.S6	AUGUSTUS	exon	1811492	1811548	.	+	.	transcript_id "Ledus.S6G004900.t1"; gene_id "Ledus.S6G004900"
Ledus.S6	AUGUSTUS	intron	1811549	1811638	.	+	.	transcript_id "Ledus.S6G004900.t1"; gene_id "Ledus.S6G004900"
Ledus.S6	AUGUSTUS	CDS	1811639	1811824	0.83	+	0	transcript_id "Ledus.S6G004900.t1"; gene_id "Ledus.S6G004900"
Ledus.S6	AUGUSTUS	exon	1811639	1811824	.	+	.	transcript_id "Ledus.S6G004900.t1"; gene_id "Ledus.S6G004900"
Ledus.S6	AUGUSTUS	stop_codon	1811825	1811827	.	+	0	transcript_id "Ledus.S6G004900.t1"; gene_id "Ledus.S6G004900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1288.t1 is derived from g8149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9088442	9088726	.	-	.	Ledus.S2G117000
Ledus.S2	AUGUSTUS	transcript	9088442	9088726	.	-	.	transcript_id "Ledus.S2G117000.t1"; gene_id "Ledus.S2G117000"
Ledus.S2	AUGUSTUS	stop_codon	9088439	9088441	.	-	0	transcript_id "Ledus.S2G117000.t1"; gene_id "Ledus.S2G117000"
Ledus.S2	AUGUSTUS	CDS	9088442	9088726	0.51	-	0	transcript_id "Ledus.S2G117000.t1"; gene_id "Ledus.S2G117000"
Ledus.S2	AUGUSTUS	exon	9088442	9088726	.	-	.	transcript_id "Ledus.S2G117000.t1"; gene_id "Ledus.S2G117000"
Ledus.S2	AUGUSTUS	start_codon	9088724	9088726	.	-	0	transcript_id "Ledus.S2G117000.t1"; gene_id "Ledus.S2G117000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8084.t1 is derived from g12755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9090162	9091308	.	-	.	Ledus.S5G086200
Ledus.S5	AUGUSTUS	transcript	9090162	9091308	.	-	.	transcript_id "Ledus.S5G086200.t1"; gene_id "Ledus.S5G086200"
Ledus.S5	AUGUSTUS	stop_codon	9090159	9090161	.	-	0	transcript_id "Ledus.S5G086200.t1"; gene_id "Ledus.S5G086200"
Ledus.S5	AUGUSTUS	CDS	9090162	9090734	0.96	-	0	transcript_id "Ledus.S5G086200.t1"; gene_id "Ledus.S5G086200"
Ledus.S5	AUGUSTUS	exon	9090162	9090734	.	-	.	transcript_id "Ledus.S5G086200.t1"; gene_id "Ledus.S5G086200"
Ledus.S5	AUGUSTUS	intron	9090735	9090816	.	-	.	transcript_id "Ledus.S5G086200.t1"; gene_id "Ledus.S5G086200"
Ledus.S5	AUGUSTUS	CDS	9090817	9091002	1	-	0	transcript_id "Ledus.S5G086200.t1"; gene_id "Ledus.S5G086200"
Ledus.S5	AUGUSTUS	exon	9090817	9091002	.	-	.	transcript_id "Ledus.S5G086200.t1"; gene_id "Ledus.S5G086200"
Ledus.S5	AUGUSTUS	intron	9091003	9091077	.	-	.	transcript_id "Ledus.S5G086200.t1"; gene_id "Ledus.S5G086200"
Ledus.S5	AUGUSTUS	CDS	9091078	9091308	0.95	-	0	transcript_id "Ledus.S5G086200.t1"; gene_id "Ledus.S5G086200"
Ledus.S5	AUGUSTUS	exon	9091078	9091308	.	-	.	transcript_id "Ledus.S5G086200.t1"; gene_id "Ledus.S5G086200"
Ledus.S5	AUGUSTUS	start_codon	9091306	9091308	.	-	0	transcript_id "Ledus.S5G086200.t1"; gene_id "Ledus.S5G086200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10313.t1 is derived from g11343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14190301	14193261	.	-	.	Ledus.S3G179000
Ledus.S3	AUGUSTUS	transcript	14190301	14192844	.	-	.	transcript_id "Ledus.S3G179000.t1"; gene_id "Ledus.S3G179000"
Ledus.S3	AUGUSTUS	stop_codon	14190298	14190300	.	-	0	transcript_id "Ledus.S3G179000.t1"; gene_id "Ledus.S3G179000"
Ledus.S3	AUGUSTUS	CDS	14190301	14192844	0.41	-	0	transcript_id "Ledus.S3G179000.t1"; gene_id "Ledus.S3G179000"
Ledus.S3	AUGUSTUS	exon	14190301	14192844	.	-	.	transcript_id "Ledus.S3G179000.t1"; gene_id "Ledus.S3G179000"
Ledus.S3	AUGUSTUS	start_codon	14192842	14192844	.	-	0	transcript_id "Ledus.S3G179000.t1"; gene_id "Ledus.S3G179000"
Ledus.S3	AUGUSTUS	transcript	14190301	14193261	.	-	.	transcript_id "Ledus.S3G179000.t2"; gene_id "Ledus.S3G179000"
Ledus.S3	AUGUSTUS	stop_codon	14190298	14190300	.	-	0	transcript_id "Ledus.S3G179000.t2"; gene_id "Ledus.S3G179000"
Ledus.S3	AUGUSTUS	CDS	14190301	14193261	0.31	-	0	transcript_id "Ledus.S3G179000.t2"; gene_id "Ledus.S3G179000"
Ledus.S3	AUGUSTUS	exon	14190301	14193261	.	-	.	transcript_id "Ledus.S3G179000.t2"; gene_id "Ledus.S3G179000"
Ledus.S3	AUGUSTUS	start_codon	14193259	14193261	.	-	0	transcript_id "Ledus.S3G179000.t2"; gene_id "Ledus.S3G179000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4310.t1 is derived from g1746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16147719	16148077	.	+	.	Ledus.S1G173100
Ledus.S1	AUGUSTUS	transcript	16147719	16148077	.	+	.	transcript_id "Ledus.S1G173100.t1"; gene_id "Ledus.S1G173100"
Ledus.S1	AUGUSTUS	start_codon	16147719	16147721	.	+	0	transcript_id "Ledus.S1G173100.t1"; gene_id "Ledus.S1G173100"
Ledus.S1	AUGUSTUS	CDS	16147719	16147840	0.55	+	0	transcript_id "Ledus.S1G173100.t1"; gene_id "Ledus.S1G173100"
Ledus.S1	AUGUSTUS	exon	16147719	16147840	.	+	.	transcript_id "Ledus.S1G173100.t1"; gene_id "Ledus.S1G173100"
Ledus.S1	AUGUSTUS	intron	16147841	16147971	.	+	.	transcript_id "Ledus.S1G173100.t1"; gene_id "Ledus.S1G173100"
Ledus.S1	AUGUSTUS	CDS	16147972	16148077	0.86	+	1	transcript_id "Ledus.S1G173100.t1"; gene_id "Ledus.S1G173100"
Ledus.S1	AUGUSTUS	exon	16147972	16148077	.	+	.	transcript_id "Ledus.S1G173100.t1"; gene_id "Ledus.S1G173100"
Ledus.S1	AUGUSTUS	stop_codon	16148078	16148080	.	+	0	transcript_id "Ledus.S1G173100.t1"; gene_id "Ledus.S1G173100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4488.t1 is derived from g1924.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17313122	17314100	.	-	.	Ledus.S1G190900
Ledus.S1	AUGUSTUS	transcript	17313122	17314100	.	-	.	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	stop_codon	17313119	17313121	.	-	0	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	CDS	17313122	17313202	1	-	0	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	exon	17313122	17313202	.	-	.	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	intron	17313203	17313269	.	-	.	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	CDS	17313270	17313428	1	-	0	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	exon	17313270	17313428	.	-	.	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	intron	17313429	17313516	.	-	.	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	CDS	17313517	17313678	1	-	0	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	exon	17313517	17313678	.	-	.	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	intron	17313679	17313771	.	-	.	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	CDS	17313772	17313846	1	-	0	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	exon	17313772	17313846	.	-	.	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	intron	17313847	17314061	.	-	.	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	CDS	17314062	17314100	0.63	-	0	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	exon	17314062	17314100	.	-	.	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
Ledus.S1	AUGUSTUS	start_codon	17314098	17314100	.	-	0	transcript_id "Ledus.S1G190900.t1"; gene_id "Ledus.S1G190900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg970.t1 is derived from g7831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6386624	6388789	.	+	.	Ledus.S2G085200
Ledus.S2	AUGUSTUS	transcript	6386624	6388789	.	+	.	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	start_codon	6386624	6386626	.	+	0	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	CDS	6386624	6387870	1	+	0	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	exon	6386624	6387870	.	+	.	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	intron	6387871	6387965	.	+	.	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	CDS	6387966	6388100	1	+	1	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	exon	6387966	6388100	.	+	.	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	intron	6388101	6388190	.	+	.	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	CDS	6388191	6388401	1	+	1	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	exon	6388191	6388401	.	+	.	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	intron	6388402	6388483	.	+	.	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	CDS	6388484	6388789	0.86	+	0	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	exon	6388484	6388789	.	+	.	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
Ledus.S2	AUGUSTUS	stop_codon	6388790	6388792	.	+	0	transcript_id "Ledus.S2G085200.t1"; gene_id "Ledus.S2G085200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2068.t1 is derived from g8931.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14434321	14438081	.	-	.	Ledus.S2G195000
Ledus.S2	AUGUSTUS	transcript	14434321	14438081	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	stop_codon	14434318	14434320	.	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14434321	14434452	0.48	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14434321	14434452	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14434453	14434553	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14434554	14434778	0.54	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14434554	14434778	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14434779	14434875	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14434876	14435052	1	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14434876	14435052	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14435053	14435161	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14435162	14435267	0.77	-	1	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14435162	14435267	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14435268	14435358	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14435359	14435521	1	-	2	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14435359	14435521	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14435522	14435667	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14435668	14435756	1	-	1	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14435668	14435756	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14435757	14435828	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14435829	14435875	1	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14435829	14435875	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14435876	14435967	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14435968	14436066	1	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14435968	14436066	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14436067	14436155	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14436156	14436248	1	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14436156	14436248	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14436249	14436348	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14436349	14436531	1	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14436349	14436531	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14436532	14436624	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14436625	14436725	1	-	2	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14436625	14436725	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14436726	14436825	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14436826	14436880	1	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14436826	14436880	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14436881	14436966	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14436967	14437065	1	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14436967	14437065	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14437066	14437174	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14437175	14437573	1	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14437175	14437573	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14437574	14437653	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14437654	14437749	0.93	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14437654	14437749	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14437750	14437865	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14437866	14438081	0.67	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14437866	14438081	.	-	.	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	start_codon	14438079	14438081	.	-	0	transcript_id "Ledus.S2G195000.t1"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	transcript	14434321	14438081	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	stop_codon	14434318	14434320	.	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14434321	14434452	0.39	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14434321	14434452	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14434453	14434553	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14434554	14434778	0.46	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14434554	14434778	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14434779	14434875	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14434876	14435052	1	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14434876	14435052	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14435053	14435161	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14435162	14435267	0.68	-	1	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14435162	14435267	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14435268	14435358	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14435359	14435521	1	-	2	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14435359	14435521	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14435522	14435667	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14435668	14435756	1	-	1	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14435668	14435756	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14435757	14435828	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14435829	14435875	1	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14435829	14435875	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14435876	14435967	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14435968	14436066	1	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14435968	14436066	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14436067	14436155	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14436156	14436248	1	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14436156	14436248	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14436249	14436348	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14436349	14436531	1	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14436349	14436531	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14436532	14436624	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14436625	14436725	1	-	2	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14436625	14436725	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14436726	14436825	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14436826	14436880	1	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14436826	14436880	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14436881	14436966	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14436967	14437065	1	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14436967	14437065	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14437066	14437174	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14437175	14437573	0.99	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14437175	14437573	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14437574	14437653	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14437654	14437749	1	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14437654	14437749	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	intron	14437750	14437904	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	CDS	14437905	14438081	0.67	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	exon	14437905	14438081	.	-	.	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
Ledus.S2	AUGUSTUS	start_codon	14438079	14438081	.	-	0	transcript_id "Ledus.S2G195000.t2"; gene_id "Ledus.S2G195000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9541.t1 is derived from g10571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7644796	7645095	.	-	.	Ledus.S3G101800
Ledus.S3	AUGUSTUS	transcript	7644796	7645095	.	-	.	transcript_id "Ledus.S3G101800.t1"; gene_id "Ledus.S3G101800"
Ledus.S3	AUGUSTUS	stop_codon	7644793	7644795	.	-	0	transcript_id "Ledus.S3G101800.t1"; gene_id "Ledus.S3G101800"
Ledus.S3	AUGUSTUS	CDS	7644796	7645095	0.94	-	0	transcript_id "Ledus.S3G101800.t1"; gene_id "Ledus.S3G101800"
Ledus.S3	AUGUSTUS	exon	7644796	7645095	.	-	.	transcript_id "Ledus.S3G101800.t1"; gene_id "Ledus.S3G101800"
Ledus.S3	AUGUSTUS	start_codon	7645093	7645095	.	-	0	transcript_id "Ledus.S3G101800.t1"; gene_id "Ledus.S3G101800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4365.t1 is derived from g1801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16626931	16630742	.	+	.	Ledus.S1G178600
Ledus.S1	AUGUSTUS	transcript	16626931	16630742	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	start_codon	16626931	16626933	.	+	0	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16626931	16627056	1	+	0	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16626931	16627056	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16627057	16627150	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16627151	16627291	1	+	0	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16627151	16627291	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16627292	16627368	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16627369	16627460	1	+	0	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16627369	16627460	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16627461	16627662	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16627663	16627759	1	+	1	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16627663	16627759	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16627760	16627886	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16627887	16627930	1	+	0	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16627887	16627930	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16627931	16628186	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16628187	16628275	1	+	1	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16628187	16628275	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16628276	16628486	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16628487	16628578	1	+	2	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16628487	16628578	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16628579	16628660	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16628661	16628813	1	+	0	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16628661	16628813	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16628814	16628958	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16628959	16629106	1	+	0	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16628959	16629106	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16629107	16629206	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16629207	16629283	1	+	2	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16629207	16629283	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16629284	16629401	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16629402	16629473	1	+	0	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16629402	16629473	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16629474	16629632	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16629633	16629680	1	+	0	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16629633	16629680	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16629681	16629874	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16629875	16630002	1	+	0	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16629875	16630002	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16630003	16630090	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16630091	16630247	1	+	1	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16630091	16630247	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16630248	16630372	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16630373	16630574	0.89	+	0	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16630373	16630574	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	intron	16630575	16630692	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	CDS	16630693	16630742	0.93	+	2	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	exon	16630693	16630742	.	+	.	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
Ledus.S1	AUGUSTUS	stop_codon	16630743	16630745	.	+	0	transcript_id "Ledus.S1G178600.t1"; gene_id "Ledus.S1G178600"
# This transcript jg4407.t1 is derived from g1842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16923073	16924123	.	-	.	Ledus.S1G182700
Ledus.S1	AUGUSTUS	transcript	16923073	16924123	.	-	.	transcript_id "Ledus.S1G182700.t1"; gene_id "Ledus.S1G182700"
Ledus.S1	AUGUSTUS	stop_codon	16923070	16923072	.	-	0	transcript_id "Ledus.S1G182700.t1"; gene_id "Ledus.S1G182700"
Ledus.S1	AUGUSTUS	CDS	16923073	16923533	0.31	-	2	transcript_id "Ledus.S1G182700.t1"; gene_id "Ledus.S1G182700"
Ledus.S1	AUGUSTUS	exon	16923073	16923533	.	-	.	transcript_id "Ledus.S1G182700.t1"; gene_id "Ledus.S1G182700"
Ledus.S1	AUGUSTUS	intron	16923534	16923680	.	-	.	transcript_id "Ledus.S1G182700.t1"; gene_id "Ledus.S1G182700"
Ledus.S1	AUGUSTUS	CDS	16923681	16923898	0.28	-	1	transcript_id "Ledus.S1G182700.t1"; gene_id "Ledus.S1G182700"
Ledus.S1	AUGUSTUS	exon	16923681	16923898	.	-	.	transcript_id "Ledus.S1G182700.t1"; gene_id "Ledus.S1G182700"
Ledus.S1	AUGUSTUS	intron	16923899	16923989	.	-	.	transcript_id "Ledus.S1G182700.t1"; gene_id "Ledus.S1G182700"
Ledus.S1	AUGUSTUS	CDS	16923990	16924123	0.31	-	0	transcript_id "Ledus.S1G182700.t1"; gene_id "Ledus.S1G182700"
Ledus.S1	AUGUSTUS	exon	16923990	16924123	.	-	.	transcript_id "Ledus.S1G182700.t1"; gene_id "Ledus.S1G182700"
Ledus.S1	AUGUSTUS	start_codon	16924121	16924123	.	-	0	transcript_id "Ledus.S1G182700.t1"; gene_id "Ledus.S1G182700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg988.t1 is derived from g7849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6523347	6524442	.	+	.	Ledus.S2G087000
Ledus.S2	AUGUSTUS	transcript	6523347	6524442	.	+	.	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	start_codon	6523347	6523349	.	+	0	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	CDS	6523347	6523372	0.36	+	0	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	exon	6523347	6523372	.	+	.	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	intron	6523373	6523517	.	+	.	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	CDS	6523518	6523634	0.72	+	1	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	exon	6523518	6523634	.	+	.	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	intron	6523635	6523727	.	+	.	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	CDS	6523728	6524034	1	+	1	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	exon	6523728	6524034	.	+	.	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	intron	6524035	6524188	.	+	.	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	CDS	6524189	6524254	1	+	0	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	exon	6524189	6524254	.	+	.	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	intron	6524255	6524385	.	+	.	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	CDS	6524386	6524442	1	+	0	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	exon	6524386	6524442	.	+	.	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
Ledus.S2	AUGUSTUS	stop_codon	6524443	6524445	.	+	0	transcript_id "Ledus.S2G087000.t1"; gene_id "Ledus.S2G087000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4712.t1 is derived from g2150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19189089	19191219	.	+	.	Ledus.S1G213300
Ledus.S1	AUGUSTUS	transcript	19189089	19191219	.	+	.	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	start_codon	19189089	19189091	.	+	0	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	CDS	19189089	19189175	0.93	+	0	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	exon	19189089	19189175	.	+	.	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	intron	19189176	19189455	.	+	.	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	CDS	19189456	19189671	0.52	+	0	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	exon	19189456	19189671	.	+	.	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	intron	19189672	19189793	.	+	.	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	CDS	19189794	19189953	0.52	+	0	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	exon	19189794	19189953	.	+	.	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	intron	19189954	19190037	.	+	.	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	CDS	19190038	19190304	1	+	2	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	exon	19190038	19190304	.	+	.	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	intron	19190305	19190642	.	+	.	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	CDS	19190643	19190972	1	+	2	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	exon	19190643	19190972	.	+	.	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	intron	19190973	19191097	.	+	.	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	CDS	19191098	19191219	1	+	2	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	exon	19191098	19191219	.	+	.	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
Ledus.S1	AUGUSTUS	stop_codon	19191220	19191222	.	+	0	transcript_id "Ledus.S1G213300.t1"; gene_id "Ledus.S1G213300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9003.t1 is derived from g10033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3809408	3809909	.	-	.	Ledus.S3G048000
Ledus.S3	AUGUSTUS	transcript	3809408	3809909	.	-	.	transcript_id "Ledus.S3G048000.t1"; gene_id "Ledus.S3G048000"
Ledus.S3	AUGUSTUS	stop_codon	3809405	3809407	.	-	0	transcript_id "Ledus.S3G048000.t1"; gene_id "Ledus.S3G048000"
Ledus.S3	AUGUSTUS	CDS	3809408	3809495	0.64	-	1	transcript_id "Ledus.S3G048000.t1"; gene_id "Ledus.S3G048000"
Ledus.S3	AUGUSTUS	exon	3809408	3809495	.	-	.	transcript_id "Ledus.S3G048000.t1"; gene_id "Ledus.S3G048000"
Ledus.S3	AUGUSTUS	intron	3809496	3809687	.	-	.	transcript_id "Ledus.S3G048000.t1"; gene_id "Ledus.S3G048000"
Ledus.S3	AUGUSTUS	CDS	3809688	3809777	0.57	-	1	transcript_id "Ledus.S3G048000.t1"; gene_id "Ledus.S3G048000"
Ledus.S3	AUGUSTUS	exon	3809688	3809777	.	-	.	transcript_id "Ledus.S3G048000.t1"; gene_id "Ledus.S3G048000"
Ledus.S3	AUGUSTUS	intron	3809778	3809883	.	-	.	transcript_id "Ledus.S3G048000.t1"; gene_id "Ledus.S3G048000"
Ledus.S3	AUGUSTUS	CDS	3809884	3809909	0.46	-	0	transcript_id "Ledus.S3G048000.t1"; gene_id "Ledus.S3G048000"
Ledus.S3	AUGUSTUS	exon	3809884	3809909	.	-	.	transcript_id "Ledus.S3G048000.t1"; gene_id "Ledus.S3G048000"
Ledus.S3	AUGUSTUS	start_codon	3809907	3809909	.	-	0	transcript_id "Ledus.S3G048000.t1"; gene_id "Ledus.S3G048000"
# This transcript jg12854.t2 is derived from g11888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12855.t1 is derived from g11889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	282216	282413	.	-	.	Ledus.C11G001900
Ledus.C11	AUGUSTUS	transcript	282216	282413	.	-	.	transcript_id "Ledus.C11G001900.t1"; gene_id "Ledus.C11G001900"
Ledus.C11	AUGUSTUS	stop_codon	282213	282215	.	-	0	transcript_id "Ledus.C11G001900.t1"; gene_id "Ledus.C11G001900"
Ledus.C11	AUGUSTUS	CDS	282216	282413	0.82	-	0	transcript_id "Ledus.C11G001900.t1"; gene_id "Ledus.C11G001900"
Ledus.C11	AUGUSTUS	exon	282216	282413	.	-	.	transcript_id "Ledus.C11G001900.t1"; gene_id "Ledus.C11G001900"
Ledus.C11	AUGUSTUS	start_codon	282411	282413	.	-	0	transcript_id "Ledus.C11G001900.t1"; gene_id "Ledus.C11G001900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8101.t1 is derived from g12772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9140886	9141722	.	-	.	Ledus.S5G087900
Ledus.S5	AUGUSTUS	transcript	9140886	9141722	.	-	.	transcript_id "Ledus.S5G087900.t1"; gene_id "Ledus.S5G087900"
Ledus.S5	AUGUSTUS	stop_codon	9140883	9140885	.	-	0	transcript_id "Ledus.S5G087900.t1"; gene_id "Ledus.S5G087900"
Ledus.S5	AUGUSTUS	CDS	9140886	9141003	0.54	-	1	transcript_id "Ledus.S5G087900.t1"; gene_id "Ledus.S5G087900"
Ledus.S5	AUGUSTUS	exon	9140886	9141003	.	-	.	transcript_id "Ledus.S5G087900.t1"; gene_id "Ledus.S5G087900"
Ledus.S5	AUGUSTUS	intron	9141004	9141228	.	-	.	transcript_id "Ledus.S5G087900.t1"; gene_id "Ledus.S5G087900"
Ledus.S5	AUGUSTUS	CDS	9141229	9141364	0.39	-	2	transcript_id "Ledus.S5G087900.t1"; gene_id "Ledus.S5G087900"
Ledus.S5	AUGUSTUS	exon	9141229	9141364	.	-	.	transcript_id "Ledus.S5G087900.t1"; gene_id "Ledus.S5G087900"
Ledus.S5	AUGUSTUS	intron	9141365	9141586	.	-	.	transcript_id "Ledus.S5G087900.t1"; gene_id "Ledus.S5G087900"
Ledus.S5	AUGUSTUS	CDS	9141587	9141722	0.84	-	0	transcript_id "Ledus.S5G087900.t1"; gene_id "Ledus.S5G087900"
Ledus.S5	AUGUSTUS	exon	9141587	9141722	.	-	.	transcript_id "Ledus.S5G087900.t1"; gene_id "Ledus.S5G087900"
Ledus.S5	AUGUSTUS	start_codon	9141720	9141722	.	-	0	transcript_id "Ledus.S5G087900.t1"; gene_id "Ledus.S5G087900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11279.t1 is derived from g4897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3277133	3278161	.	+	.	Ledus.S4G043500
Ledus.S4	AUGUSTUS	transcript	3277133	3278161	.	+	.	transcript_id "Ledus.S4G043500.t1"; gene_id "Ledus.S4G043500"
Ledus.S4	AUGUSTUS	start_codon	3277133	3277135	.	+	0	transcript_id "Ledus.S4G043500.t1"; gene_id "Ledus.S4G043500"
Ledus.S4	AUGUSTUS	CDS	3277133	3277299	0.79	+	0	transcript_id "Ledus.S4G043500.t1"; gene_id "Ledus.S4G043500"
Ledus.S4	AUGUSTUS	exon	3277133	3277299	.	+	.	transcript_id "Ledus.S4G043500.t1"; gene_id "Ledus.S4G043500"
Ledus.S4	AUGUSTUS	intron	3277300	3277623	.	+	.	transcript_id "Ledus.S4G043500.t1"; gene_id "Ledus.S4G043500"
Ledus.S4	AUGUSTUS	CDS	3277624	3278161	0.95	+	1	transcript_id "Ledus.S4G043500.t1"; gene_id "Ledus.S4G043500"
Ledus.S4	AUGUSTUS	exon	3277624	3278161	.	+	.	transcript_id "Ledus.S4G043500.t1"; gene_id "Ledus.S4G043500"
Ledus.S4	AUGUSTUS	stop_codon	3278162	3278164	.	+	0	transcript_id "Ledus.S4G043500.t1"; gene_id "Ledus.S4G043500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg255.t1 is derived from g7116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1183162	1187785	.	-	.	Ledus.S2G013700
Ledus.S2	AUGUSTUS	transcript	1183162	1187785	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	stop_codon	1183159	1183161	.	-	0	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	CDS	1183162	1183278	0.99	-	0	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	exon	1183162	1183278	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	intron	1183279	1183568	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	CDS	1183569	1184209	0.99	-	2	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	exon	1183569	1184209	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	intron	1184210	1184289	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	CDS	1184290	1184539	1	-	0	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	exon	1184290	1184539	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	intron	1184540	1184636	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	CDS	1184637	1185080	0.59	-	0	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	exon	1184637	1185080	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	intron	1185081	1185159	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	CDS	1185160	1187388	0.7	-	0	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	exon	1185160	1187388	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	intron	1187389	1187467	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	CDS	1187468	1187532	1	-	2	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	exon	1187468	1187532	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	intron	1187533	1187634	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	CDS	1187635	1187785	0.85	-	0	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	exon	1187635	1187785	.	-	.	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
Ledus.S2	AUGUSTUS	start_codon	1187783	1187785	.	-	0	transcript_id "Ledus.S2G013700.t1"; gene_id "Ledus.S2G013700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1237.t1 is derived from g8098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8779978	8785279	.	+	.	Ledus.S2G111900
Ledus.S2	AUGUSTUS	transcript	8779978	8785279	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	start_codon	8779978	8779980	.	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8779978	8780085	0.99	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8779978	8780085	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8780086	8780388	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8780389	8780541	1	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8780389	8780541	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8780542	8780632	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8780633	8780803	1	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8780633	8780803	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8780804	8780936	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8780937	8781037	1	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8780937	8781037	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8781038	8781111	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8781112	8781196	1	+	1	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8781112	8781196	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8781197	8781283	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8781284	8781407	1	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8781284	8781407	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8781408	8781477	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8781478	8781585	1	+	2	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8781478	8781585	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8781586	8781703	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8781704	8781823	1	+	2	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8781704	8781823	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8781824	8781899	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8781900	8781955	1	+	2	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8781900	8781955	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8781956	8782112	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8782113	8782847	0.99	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8782113	8782847	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8782848	8783000	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8783001	8783168	1	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8783001	8783168	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8783169	8783351	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8783352	8783434	1	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8783352	8783434	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8783435	8783523	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8783524	8783608	0.98	+	1	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8783524	8783608	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8783609	8783707	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8783708	8783831	0.78	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8783708	8783831	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8783832	8783940	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8783941	8784062	0.97	+	2	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8783941	8784062	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8784063	8784180	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8784181	8784310	0.93	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8784181	8784310	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8784311	8784442	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8784443	8784522	0.86	+	2	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8784443	8784522	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	intron	8784523	8784604	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	CDS	8784605	8785279	0.96	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	exon	8784605	8785279	.	+	.	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
Ledus.S2	AUGUSTUS	stop_codon	8785280	8785282	.	+	0	transcript_id "Ledus.S2G111900.t1"; gene_id "Ledus.S2G111900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8954.t1 is derived from g9984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3405524	3411818	.	-	.	Ledus.S3G043100
Ledus.S3	AUGUSTUS	transcript	3405524	3411818	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	stop_codon	3405521	3405523	.	-	0	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3405524	3405565	1	-	0	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3405524	3405565	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3405566	3405678	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3405679	3405780	0.95	-	0	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3405679	3405780	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3405781	3405867	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3405868	3406025	1	-	2	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3405868	3406025	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3406026	3406119	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3406120	3406241	1	-	1	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3406120	3406241	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3406242	3406504	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3406505	3406557	0.41	-	0	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3406505	3406557	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3406558	3406915	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3406916	3406946	0.31	-	1	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3406916	3406946	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3406947	3407125	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3407126	3409213	0.6	-	1	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3407126	3409213	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3409214	3409296	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3409297	3410090	1	-	0	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3409297	3410090	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3410091	3410184	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3410185	3410277	1	-	0	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3410185	3410277	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3410278	3410359	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3410360	3410453	1	-	1	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3410360	3410453	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3410454	3410595	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3410596	3410687	1	-	0	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3410596	3410687	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3410688	3410775	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3410776	3411003	1	-	0	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3410776	3411003	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3411004	3411086	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3411087	3411302	1	-	0	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3411087	3411302	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3411303	3411393	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3411394	3411494	1	-	2	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3411394	3411494	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	intron	3411495	3411595	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	CDS	3411596	3411818	0.72	-	0	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	exon	3411596	3411818	.	-	.	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
Ledus.S3	AUGUSTUS	start_codon	3411816	3411818	.	-	0	transcript_id "Ledus.S3G043100.t1"; gene_id "Ledus.S3G043100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9255.t1 is derived from g10285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5627038	5630170	.	+	.	Ledus.S3G073200
Ledus.S3	AUGUSTUS	transcript	5627038	5630170	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	start_codon	5627038	5627040	.	+	0	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	CDS	5627038	5627345	0.97	+	0	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	exon	5627038	5627345	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	intron	5627346	5627448	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	CDS	5627449	5627610	1	+	1	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	exon	5627449	5627610	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	intron	5627611	5627683	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	CDS	5627684	5627819	1	+	1	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	exon	5627684	5627819	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	intron	5627820	5627903	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	CDS	5627904	5628005	1	+	0	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	exon	5627904	5628005	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	intron	5628006	5628080	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	CDS	5628081	5628200	1	+	0	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	exon	5628081	5628200	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	intron	5628201	5628276	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	CDS	5628277	5628357	1	+	0	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	exon	5628277	5628357	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	intron	5628358	5628441	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	CDS	5628442	5628782	1	+	0	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	exon	5628442	5628782	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	intron	5628783	5628874	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	CDS	5628875	5629117	1	+	1	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	exon	5628875	5629117	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	intron	5629118	5629209	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	CDS	5629210	5629534	1	+	1	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	exon	5629210	5629534	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	intron	5629535	5629633	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	CDS	5629634	5629867	0.88	+	0	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	exon	5629634	5629867	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	intron	5629868	5629978	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	CDS	5629979	5630170	0.94	+	0	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	exon	5629979	5630170	.	+	.	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
Ledus.S3	AUGUSTUS	stop_codon	5630171	5630173	.	+	0	transcript_id "Ledus.S3G073200.t1"; gene_id "Ledus.S3G073200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2333.t1 is derived from g9196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17224362	17225672	.	-	.	Ledus.S2G221500
Ledus.S2	AUGUSTUS	transcript	17224362	17225672	.	-	.	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	stop_codon	17224359	17224361	.	-	0	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	CDS	17224362	17224601	1	-	0	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	exon	17224362	17224601	.	-	.	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	intron	17224602	17224684	.	-	.	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	CDS	17224685	17225009	1	-	1	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	exon	17224685	17225009	.	-	.	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	intron	17225010	17225085	.	-	.	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	CDS	17225086	17225339	1	-	0	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	exon	17225086	17225339	.	-	.	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	intron	17225340	17225417	.	-	.	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	CDS	17225418	17225530	1	-	2	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	exon	17225418	17225530	.	-	.	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	intron	17225531	17225614	.	-	.	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	CDS	17225615	17225672	1	-	0	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	exon	17225615	17225672	.	-	.	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
Ledus.S2	AUGUSTUS	start_codon	17225670	17225672	.	-	0	transcript_id "Ledus.S2G221500.t1"; gene_id "Ledus.S2G221500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5833.t1 is derived from g3275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27212108	27217882	.	+	.	Ledus.S1G325400
Ledus.S1	AUGUSTUS	transcript	27212108	27217882	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	start_codon	27212108	27212110	.	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27212108	27212134	0.66	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27212108	27212134	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27212135	27212374	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27212375	27212488	1	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27212375	27212488	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27212489	27212613	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27212614	27212862	1	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27212614	27212862	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27212863	27212974	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27212975	27213049	1	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27212975	27213049	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27213050	27213158	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27213159	27213260	1	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27213159	27213260	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27213261	27213350	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27213351	27213401	1	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27213351	27213401	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27213402	27213514	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27213515	27213620	1	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27213515	27213620	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27213621	27213777	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27213778	27213879	1	+	2	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27213778	27213879	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27213880	27213970	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27213971	27214062	1	+	2	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27213971	27214062	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27214063	27214326	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27214327	27214495	0.85	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27214327	27214495	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27214496	27214620	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27214621	27214697	1	+	2	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27214621	27214697	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27214698	27214830	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27214831	27214929	1	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27214831	27214929	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27214930	27215065	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27215066	27215156	1	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27215066	27215156	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27215157	27215343	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27215344	27215429	1	+	2	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27215344	27215429	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27215430	27215548	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27215549	27215707	0.98	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27215549	27215707	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27215708	27215849	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27215850	27215903	1	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27215850	27215903	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27215904	27216002	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27216003	27216131	1	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27216003	27216131	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27216132	27216311	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27216312	27216404	0.99	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27216312	27216404	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27216405	27216509	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27216510	27216656	0.99	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27216510	27216656	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27216657	27216788	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27216789	27216886	1	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27216789	27216886	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27216887	27217007	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27217008	27217092	1	+	1	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27217008	27217092	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27217093	27217241	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27217242	27217300	1	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27217242	27217300	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27217301	27217459	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27217460	27217558	1	+	1	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27217460	27217558	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27217559	27217640	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27217641	27217727	1	+	1	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27217641	27217727	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	intron	27217728	27217812	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	CDS	27217813	27217882	1	+	1	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	exon	27217813	27217882	.	+	.	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
Ledus.S1	AUGUSTUS	stop_codon	27217883	27217885	.	+	0	transcript_id "Ledus.S1G325400.t1"; gene_id "Ledus.S1G325400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6321.t1 is derived from g3764.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30483276	30484599	.	-	.	Ledus.S1G374200
Ledus.S1	AUGUSTUS	transcript	30483276	30484599	.	-	.	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	stop_codon	30483273	30483275	.	-	0	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	CDS	30483276	30483425	0.98	-	0	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	exon	30483276	30483425	.	-	.	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	intron	30483426	30483587	.	-	.	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	CDS	30483588	30483682	1	-	2	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	exon	30483588	30483682	.	-	.	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	intron	30483683	30483964	.	-	.	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	CDS	30483965	30484002	1	-	1	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	exon	30483965	30484002	.	-	.	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	intron	30484003	30484198	.	-	.	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	CDS	30484199	30484599	0.93	-	0	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	exon	30484199	30484599	.	-	.	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
Ledus.S1	AUGUSTUS	start_codon	30484597	30484599	.	-	0	transcript_id "Ledus.S1G374200.t1"; gene_id "Ledus.S1G374200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6027.t1 is derived from g3470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28523199	28524142	.	+	.	Ledus.S1G344800
Ledus.S1	AUGUSTUS	transcript	28523199	28524142	.	+	.	transcript_id "Ledus.S1G344800.t1"; gene_id "Ledus.S1G344800"
Ledus.S1	AUGUSTUS	start_codon	28523199	28523201	.	+	0	transcript_id "Ledus.S1G344800.t1"; gene_id "Ledus.S1G344800"
Ledus.S1	AUGUSTUS	CDS	28523199	28523823	0.99	+	0	transcript_id "Ledus.S1G344800.t1"; gene_id "Ledus.S1G344800"
Ledus.S1	AUGUSTUS	exon	28523199	28523823	.	+	.	transcript_id "Ledus.S1G344800.t1"; gene_id "Ledus.S1G344800"
Ledus.S1	AUGUSTUS	intron	28523824	28523924	.	+	.	transcript_id "Ledus.S1G344800.t1"; gene_id "Ledus.S1G344800"
Ledus.S1	AUGUSTUS	CDS	28523925	28524142	0.97	+	2	transcript_id "Ledus.S1G344800.t1"; gene_id "Ledus.S1G344800"
Ledus.S1	AUGUSTUS	exon	28523925	28524142	.	+	.	transcript_id "Ledus.S1G344800.t1"; gene_id "Ledus.S1G344800"
Ledus.S1	AUGUSTUS	stop_codon	28524143	28524145	.	+	0	transcript_id "Ledus.S1G344800.t1"; gene_id "Ledus.S1G344800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2524.t1 is derived from g9387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18584148	18587035	.	+	.	Ledus.S2G240600
Ledus.S2	AUGUSTUS	transcript	18584148	18587035	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	start_codon	18584148	18584150	.	+	0	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	CDS	18584148	18584229	0.86	+	0	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	exon	18584148	18584229	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	intron	18584230	18584727	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	CDS	18584728	18584815	1	+	2	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	exon	18584728	18584815	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	intron	18584816	18585030	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	CDS	18585031	18585082	1	+	1	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	exon	18585031	18585082	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	intron	18585083	18585412	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	CDS	18585413	18585491	1	+	0	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	exon	18585413	18585491	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	intron	18585492	18585623	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	CDS	18585624	18585706	0.97	+	2	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	exon	18585624	18585706	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	intron	18585707	18585825	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	CDS	18585826	18585922	0.98	+	0	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	exon	18585826	18585922	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	intron	18585923	18586019	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	CDS	18586020	18586065	1	+	2	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	exon	18586020	18586065	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	intron	18586066	18586363	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	CDS	18586364	18586488	0.59	+	1	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	exon	18586364	18586488	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	intron	18586489	18586603	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	CDS	18586604	18586803	0.99	+	2	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	exon	18586604	18586803	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	intron	18586804	18587017	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	CDS	18587018	18587035	1	+	0	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	exon	18587018	18587035	.	+	.	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
Ledus.S2	AUGUSTUS	stop_codon	18587036	18587038	.	+	0	transcript_id "Ledus.S2G240600.t1"; gene_id "Ledus.S2G240600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4921.t1 is derived from g2359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20640877	20649255	.	+	.	Ledus.S1G234200
Ledus.S1	AUGUSTUS	transcript	20640877	20649255	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	start_codon	20640877	20640879	.	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20640877	20641204	0.81	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20640877	20641204	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20641205	20641280	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20641281	20641499	1	+	2	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20641281	20641499	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20641500	20641576	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20641577	20642169	0.98	+	2	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20641577	20642169	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20642170	20642302	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20642303	20642476	0.92	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20642303	20642476	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20642477	20642598	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20642599	20642682	0.84	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20642599	20642682	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20642683	20642835	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20642836	20642910	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20642836	20642910	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20642911	20643037	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20643038	20643102	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20643038	20643102	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20643103	20643231	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20643232	20643322	1	+	1	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20643232	20643322	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20643323	20643457	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20643458	20643646	0.87	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20643458	20643646	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20643647	20643799	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20643800	20643910	0.32	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20643800	20643910	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20643911	20644129	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20644130	20644201	0.54	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20644130	20644201	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20644202	20644318	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20644319	20644498	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20644319	20644498	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20644499	20644608	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20644609	20644722	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20644609	20644722	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20644723	20644875	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20644876	20644995	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20644876	20644995	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20644996	20645125	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20645126	20645452	0.96	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20645126	20645452	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20645453	20645605	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20645606	20645698	0.93	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20645606	20645698	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20645699	20645797	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20645798	20645919	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20645798	20645919	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20645920	20646026	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20646027	20646099	1	+	1	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20646027	20646099	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20646100	20646251	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20646252	20646308	0.99	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20646252	20646308	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20646309	20646424	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20646425	20646517	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20646425	20646517	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20646518	20646627	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20646628	20646753	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20646628	20646753	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20646754	20646839	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20646840	20646937	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20646840	20646937	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20646938	20647023	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20647024	20647069	0.96	+	1	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20647024	20647069	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20647070	20647184	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20647185	20647298	0.98	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20647185	20647298	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20647299	20647400	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20647401	20647484	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20647401	20647484	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20647485	20647601	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20647602	20647715	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20647602	20647715	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20647716	20647796	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20647797	20647886	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20647797	20647886	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20647887	20647973	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20647974	20648056	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20647974	20648056	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20648057	20648157	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20648158	20648380	0.65	+	1	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20648158	20648380	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20648381	20648481	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20648482	20648535	1	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20648482	20648535	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20648536	20648694	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20648695	20648814	0.99	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20648695	20648814	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20648815	20648928	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20648929	20649003	0.95	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20648929	20649003	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	intron	20649004	20649105	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	CDS	20649106	20649255	0.95	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	exon	20649106	20649255	.	+	.	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
Ledus.S1	AUGUSTUS	stop_codon	20649256	20649258	.	+	0	transcript_id "Ledus.S1G234200.t1"; gene_id "Ledus.S1G234200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11864.t1 is derived from g5483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7428406	7429973	.	+	.	Ledus.S4G102000
Ledus.S4	AUGUSTUS	transcript	7428406	7429973	.	+	.	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	start_codon	7428406	7428408	.	+	0	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	CDS	7428406	7428466	0.24	+	0	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	exon	7428406	7428466	.	+	.	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	intron	7428467	7428616	.	+	.	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	CDS	7428617	7428651	0.45	+	2	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	exon	7428617	7428651	.	+	.	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	intron	7428652	7428743	.	+	.	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	CDS	7428744	7428887	0.74	+	0	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	exon	7428744	7428887	.	+	.	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	intron	7428888	7428963	.	+	.	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	CDS	7428964	7429689	1	+	0	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	exon	7428964	7429689	.	+	.	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	intron	7429690	7429790	.	+	.	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	CDS	7429791	7429973	1	+	0	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	exon	7429791	7429973	.	+	.	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
Ledus.S4	AUGUSTUS	stop_codon	7429974	7429976	.	+	0	transcript_id "Ledus.S4G102000.t1"; gene_id "Ledus.S4G102000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9935.t1 is derived from g10965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11303988	11304686	.	+	.	Ledus.S3G141200
Ledus.S3	AUGUSTUS	transcript	11303988	11304686	.	+	.	transcript_id "Ledus.S3G141200.t1"; gene_id "Ledus.S3G141200"
Ledus.S3	AUGUSTUS	start_codon	11303988	11303990	.	+	0	transcript_id "Ledus.S3G141200.t1"; gene_id "Ledus.S3G141200"
Ledus.S3	AUGUSTUS	CDS	11303988	11304686	0.42	+	0	transcript_id "Ledus.S3G141200.t1"; gene_id "Ledus.S3G141200"
Ledus.S3	AUGUSTUS	exon	11303988	11304686	.	+	.	transcript_id "Ledus.S3G141200.t1"; gene_id "Ledus.S3G141200"
Ledus.S3	AUGUSTUS	stop_codon	11304687	11304689	.	+	0	transcript_id "Ledus.S3G141200.t1"; gene_id "Ledus.S3G141200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6550.t1 is derived from g3993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32262845	32264623	.	-	.	Ledus.S1G397100
Ledus.S1	AUGUSTUS	transcript	32262845	32264623	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	stop_codon	32262842	32262844	.	-	0	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	CDS	32262845	32262905	0.92	-	1	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	exon	32262845	32262905	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	intron	32262906	32263031	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	CDS	32263032	32263118	0.91	-	1	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	exon	32263032	32263118	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	intron	32263119	32263222	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	CDS	32263223	32263367	0.65	-	2	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	exon	32263223	32263367	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	intron	32263368	32263438	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	CDS	32263439	32263586	1	-	0	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	exon	32263439	32263586	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	intron	32263587	32263666	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	CDS	32263667	32263785	1	-	2	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	exon	32263667	32263785	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	intron	32263786	32263942	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	CDS	32263943	32264011	1	-	2	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	exon	32263943	32264011	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	intron	32264012	32264123	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	CDS	32264124	32264184	0.79	-	0	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	exon	32264124	32264184	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	intron	32264185	32264263	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	CDS	32264264	32264385	1	-	2	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	exon	32264264	32264385	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	intron	32264386	32264562	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	CDS	32264563	32264623	0.78	-	0	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	exon	32264563	32264623	.	-	.	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
Ledus.S1	AUGUSTUS	start_codon	32264621	32264623	.	-	0	transcript_id "Ledus.S1G397100.t1"; gene_id "Ledus.S1G397100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12271.t1 is derived from g5891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10723154	10726341	.	+	.	Ledus.S4G142700
Ledus.S4	AUGUSTUS	transcript	10723154	10726341	.	+	.	transcript_id "Ledus.S4G142700.t1"; gene_id "Ledus.S4G142700"
Ledus.S4	AUGUSTUS	start_codon	10723154	10723156	.	+	0	transcript_id "Ledus.S4G142700.t1"; gene_id "Ledus.S4G142700"
Ledus.S4	AUGUSTUS	CDS	10723154	10725838	0.47	+	0	transcript_id "Ledus.S4G142700.t1"; gene_id "Ledus.S4G142700"
Ledus.S4	AUGUSTUS	exon	10723154	10725838	.	+	.	transcript_id "Ledus.S4G142700.t1"; gene_id "Ledus.S4G142700"
Ledus.S4	AUGUSTUS	intron	10725839	10726138	.	+	.	transcript_id "Ledus.S4G142700.t1"; gene_id "Ledus.S4G142700"
Ledus.S4	AUGUSTUS	CDS	10726139	10726222	0.54	+	0	transcript_id "Ledus.S4G142700.t1"; gene_id "Ledus.S4G142700"
Ledus.S4	AUGUSTUS	exon	10726139	10726222	.	+	.	transcript_id "Ledus.S4G142700.t1"; gene_id "Ledus.S4G142700"
Ledus.S4	AUGUSTUS	intron	10726223	10726314	.	+	.	transcript_id "Ledus.S4G142700.t1"; gene_id "Ledus.S4G142700"
Ledus.S4	AUGUSTUS	CDS	10726315	10726341	0.54	+	0	transcript_id "Ledus.S4G142700.t1"; gene_id "Ledus.S4G142700"
Ledus.S4	AUGUSTUS	exon	10726315	10726341	.	+	.	transcript_id "Ledus.S4G142700.t1"; gene_id "Ledus.S4G142700"
Ledus.S4	AUGUSTUS	stop_codon	10726342	10726344	.	+	0	transcript_id "Ledus.S4G142700.t1"; gene_id "Ledus.S4G142700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6327.t1 is derived from g3770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30507107	30507498	.	-	.	Ledus.S1G374800
Ledus.S1	AUGUSTUS	transcript	30507107	30507498	.	-	.	transcript_id "Ledus.S1G374800.t1"; gene_id "Ledus.S1G374800"
Ledus.S1	AUGUSTUS	stop_codon	30507104	30507106	.	-	0	transcript_id "Ledus.S1G374800.t1"; gene_id "Ledus.S1G374800"
Ledus.S1	AUGUSTUS	CDS	30507107	30507288	0.53	-	2	transcript_id "Ledus.S1G374800.t1"; gene_id "Ledus.S1G374800"
Ledus.S1	AUGUSTUS	exon	30507107	30507288	.	-	.	transcript_id "Ledus.S1G374800.t1"; gene_id "Ledus.S1G374800"
Ledus.S1	AUGUSTUS	intron	30507289	30507419	.	-	.	transcript_id "Ledus.S1G374800.t1"; gene_id "Ledus.S1G374800"
Ledus.S1	AUGUSTUS	CDS	30507420	30507498	0.98	-	0	transcript_id "Ledus.S1G374800.t1"; gene_id "Ledus.S1G374800"
Ledus.S1	AUGUSTUS	exon	30507420	30507498	.	-	.	transcript_id "Ledus.S1G374800.t1"; gene_id "Ledus.S1G374800"
Ledus.S1	AUGUSTUS	start_codon	30507496	30507498	.	-	0	transcript_id "Ledus.S1G374800.t1"; gene_id "Ledus.S1G374800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10797.t1 is derived from g11829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17794128	17795137	.	+	.	Ledus.S3G227400
Ledus.S3	AUGUSTUS	transcript	17794128	17795137	.	+	.	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	start_codon	17794128	17794130	.	+	0	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	CDS	17794128	17794266	0.73	+	0	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	exon	17794128	17794266	.	+	.	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	intron	17794267	17794366	.	+	.	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	CDS	17794367	17794576	1	+	2	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	exon	17794367	17794576	.	+	.	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	intron	17794577	17794659	.	+	.	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	CDS	17794660	17794784	1	+	2	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	exon	17794660	17794784	.	+	.	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	intron	17794785	17794871	.	+	.	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	CDS	17794872	17794990	1	+	0	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	exon	17794872	17794990	.	+	.	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	intron	17794991	17795073	.	+	.	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	CDS	17795074	17795137	1	+	1	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	exon	17795074	17795137	.	+	.	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
Ledus.S3	AUGUSTUS	stop_codon	17795138	17795140	.	+	0	transcript_id "Ledus.S3G227400.t1"; gene_id "Ledus.S3G227400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7829.t1 is derived from g12500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7301888	7304083	.	+	.	Ledus.S5G060700
Ledus.S5	AUGUSTUS	transcript	7301888	7304083	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	start_codon	7301888	7301890	.	+	0	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	CDS	7301888	7301971	1	+	0	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	exon	7301888	7301971	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	intron	7301972	7302828	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	CDS	7302829	7302896	1	+	0	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	exon	7302829	7302896	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	intron	7302897	7303023	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	CDS	7303024	7303049	1	+	1	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	exon	7303024	7303049	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	intron	7303050	7303139	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	CDS	7303140	7303230	1	+	2	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	exon	7303140	7303230	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	intron	7303231	7303351	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	CDS	7303352	7303447	1	+	1	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	exon	7303352	7303447	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	intron	7303448	7303681	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	CDS	7303682	7303750	0.93	+	1	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	exon	7303682	7303750	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	intron	7303751	7303872	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	CDS	7303873	7303921	0.61	+	1	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	exon	7303873	7303921	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	intron	7303922	7304053	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	CDS	7304054	7304083	0.74	+	0	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	exon	7304054	7304083	.	+	.	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
Ledus.S5	AUGUSTUS	stop_codon	7304084	7304086	.	+	0	transcript_id "Ledus.S5G060700.t1"; gene_id "Ledus.S5G060700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10572.t1 is derived from g11602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16218388	16219177	.	-	.	Ledus.S3G204900
Ledus.S3	AUGUSTUS	transcript	16218388	16219177	.	-	.	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	stop_codon	16218385	16218387	.	-	0	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	CDS	16218388	16218651	0.3	-	0	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	exon	16218388	16218651	.	-	.	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	intron	16218652	16218759	.	-	.	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	CDS	16218760	16218872	0.34	-	2	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	exon	16218760	16218872	.	-	.	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	intron	16218873	16219011	.	-	.	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	CDS	16219012	16219086	0.64	-	2	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	exon	16219012	16219086	.	-	.	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	intron	16219087	16219167	.	-	.	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	CDS	16219168	16219177	0.55	-	0	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	exon	16219168	16219177	.	-	.	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
Ledus.S3	AUGUSTUS	start_codon	16219175	16219177	.	-	0	transcript_id "Ledus.S3G204900.t1"; gene_id "Ledus.S3G204900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9343.t1 is derived from g10373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6252584	6253358	.	-	.	Ledus.S3G082000
Ledus.S3	AUGUSTUS	transcript	6252584	6253358	.	-	.	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	stop_codon	6252581	6252583	.	-	0	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	CDS	6252584	6252617	0.67	-	1	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	exon	6252584	6252617	.	-	.	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	intron	6252618	6252692	.	-	.	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	CDS	6252693	6252811	0.89	-	0	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	exon	6252693	6252811	.	-	.	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	intron	6252812	6252900	.	-	.	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	CDS	6252901	6253007	0.98	-	2	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	exon	6252901	6253007	.	-	.	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	intron	6253008	6253098	.	-	.	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	CDS	6253099	6253140	0.49	-	2	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	exon	6253099	6253140	.	-	.	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	intron	6253141	6253225	.	-	.	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	CDS	6253226	6253358	0.75	-	0	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	exon	6253226	6253358	.	-	.	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
Ledus.S3	AUGUSTUS	start_codon	6253356	6253358	.	-	0	transcript_id "Ledus.S3G082000.t1"; gene_id "Ledus.S3G082000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8105.t1 is derived from g12776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9148082	9148441	.	-	.	Ledus.S5G088300
Ledus.S5	AUGUSTUS	transcript	9148082	9148441	.	-	.	transcript_id "Ledus.S5G088300.t1"; gene_id "Ledus.S5G088300"
Ledus.S5	AUGUSTUS	stop_codon	9148079	9148081	.	-	0	transcript_id "Ledus.S5G088300.t1"; gene_id "Ledus.S5G088300"
Ledus.S5	AUGUSTUS	CDS	9148082	9148441	0.62	-	0	transcript_id "Ledus.S5G088300.t1"; gene_id "Ledus.S5G088300"
Ledus.S5	AUGUSTUS	exon	9148082	9148441	.	-	.	transcript_id "Ledus.S5G088300.t1"; gene_id "Ledus.S5G088300"
Ledus.S5	AUGUSTUS	start_codon	9148439	9148441	.	-	0	transcript_id "Ledus.S5G088300.t1"; gene_id "Ledus.S5G088300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4306.t1 is derived from g1742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16129311	16130543	.	-	.	Ledus.S1G172700
Ledus.S1	AUGUSTUS	transcript	16129311	16130543	.	-	.	transcript_id "Ledus.S1G172700.t1"; gene_id "Ledus.S1G172700"
Ledus.S1	AUGUSTUS	stop_codon	16129308	16129310	.	-	0	transcript_id "Ledus.S1G172700.t1"; gene_id "Ledus.S1G172700"
Ledus.S1	AUGUSTUS	CDS	16129311	16129407	0.69	-	1	transcript_id "Ledus.S1G172700.t1"; gene_id "Ledus.S1G172700"
Ledus.S1	AUGUSTUS	exon	16129311	16129407	.	-	.	transcript_id "Ledus.S1G172700.t1"; gene_id "Ledus.S1G172700"
Ledus.S1	AUGUSTUS	intron	16129408	16129493	.	-	.	transcript_id "Ledus.S1G172700.t1"; gene_id "Ledus.S1G172700"
Ledus.S1	AUGUSTUS	CDS	16129494	16129785	0.62	-	2	transcript_id "Ledus.S1G172700.t1"; gene_id "Ledus.S1G172700"
Ledus.S1	AUGUSTUS	exon	16129494	16129785	.	-	.	transcript_id "Ledus.S1G172700.t1"; gene_id "Ledus.S1G172700"
Ledus.S1	AUGUSTUS	intron	16129786	16129930	.	-	.	transcript_id "Ledus.S1G172700.t1"; gene_id "Ledus.S1G172700"
Ledus.S1	AUGUSTUS	CDS	16129931	16130543	0.65	-	0	transcript_id "Ledus.S1G172700.t1"; gene_id "Ledus.S1G172700"
Ledus.S1	AUGUSTUS	exon	16129931	16130543	.	-	.	transcript_id "Ledus.S1G172700.t1"; gene_id "Ledus.S1G172700"
Ledus.S1	AUGUSTUS	start_codon	16130541	16130543	.	-	0	transcript_id "Ledus.S1G172700.t1"; gene_id "Ledus.S1G172700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1658.t1 is derived from g8519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11748948	11753646	.	+	.	Ledus.S2G154000
Ledus.S2	AUGUSTUS	transcript	11748948	11753646	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	start_codon	11748948	11748950	.	+	0	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11748948	11749134	0.96	+	0	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11748948	11749134	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11749135	11749226	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11749227	11749278	1	+	2	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11749227	11749278	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11749279	11749362	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11749363	11749422	1	+	1	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11749363	11749422	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11749423	11749573	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11749574	11749598	1	+	1	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11749574	11749598	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11749599	11749719	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11749720	11749805	1	+	0	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11749720	11749805	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11749806	11749905	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11749906	11750017	1	+	1	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11749906	11750017	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11750018	11750145	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11750146	11750208	1	+	0	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11750146	11750208	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11750209	11750356	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11750357	11750376	0.99	+	0	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11750357	11750376	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11750377	11750504	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11750505	11750602	0.8	+	1	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11750505	11750602	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11750603	11750683	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11750684	11750742	0.49	+	2	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11750684	11750742	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11750743	11750834	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11750835	11750911	0.78	+	0	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11750835	11750911	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11750912	11751066	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11751067	11751114	1	+	1	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11751067	11751114	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11751115	11751275	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11751276	11751336	1	+	1	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11751276	11751336	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11751337	11751421	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11751422	11751519	1	+	0	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11751422	11751519	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11751520	11751633	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11751634	11751709	0.67	+	1	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11751634	11751709	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11751710	11751823	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11751824	11751843	0.7	+	0	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11751824	11751843	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11751844	11751978	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11751979	11752076	1	+	1	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11751979	11752076	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11752077	11752160	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11752161	11752270	0.94	+	2	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11752161	11752270	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11752271	11752344	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11752345	11752467	0.93	+	0	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11752345	11752467	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11752468	11752623	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11752624	11752727	1	+	0	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11752624	11752727	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11752728	11752845	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11752846	11752934	1	+	1	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11752846	11752934	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	intron	11752935	11753383	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	CDS	11753384	11753646	1	+	2	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	exon	11753384	11753646	.	+	.	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
Ledus.S2	AUGUSTUS	stop_codon	11753647	11753649	.	+	0	transcript_id "Ledus.S2G154000.t1"; gene_id "Ledus.S2G154000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8207.t1 is derived from g12878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9882035	9888122	.	+	.	Ledus.S5G098500
Ledus.S5	AUGUSTUS	transcript	9882035	9888122	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	start_codon	9882035	9882037	.	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9882035	9882329	1	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9882035	9882329	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9882330	9882445	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9882446	9882693	1	+	2	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9882446	9882693	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9882694	9882785	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9882786	9882941	1	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9882786	9882941	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9882942	9883062	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9883063	9883221	1	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9883063	9883221	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9883222	9883365	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9883366	9883452	1	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9883366	9883452	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9883453	9883580	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9883581	9883651	1	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9883581	9883651	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9883652	9883774	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9883775	9884129	1	+	1	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9883775	9884129	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9884130	9884215	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9884216	9884371	1	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9884216	9884371	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9884372	9884477	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9884478	9884575	1	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9884478	9884575	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9884576	9884798	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9884799	9884847	1	+	1	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9884799	9884847	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9884848	9884956	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9884957	9885112	0.39	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9884957	9885112	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9885113	9885230	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9885231	9885374	0.66	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9885231	9885374	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9885375	9885540	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9885541	9885643	0.96	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9885541	9885643	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9885644	9885753	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9885754	9885918	1	+	2	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9885754	9885918	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9885919	9886088	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9886089	9886143	1	+	2	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9886089	9886143	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9886144	9886254	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9886255	9886352	0.99	+	1	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9886255	9886352	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9886353	9886437	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9886438	9886516	1	+	2	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9886438	9886516	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9886517	9887046	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9887047	9887104	1	+	1	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9887047	9887104	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9887105	9887193	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9887194	9887314	0.59	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9887194	9887314	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9887315	9887482	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9887483	9887557	0.67	+	2	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9887483	9887557	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9887558	9887670	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9887671	9887768	0.91	+	2	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9887671	9887768	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	intron	9887769	9887882	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	CDS	9887883	9888122	1	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	exon	9887883	9888122	.	+	.	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
Ledus.S5	AUGUSTUS	stop_codon	9888123	9888125	.	+	0	transcript_id "Ledus.S5G098500.t1"; gene_id "Ledus.S5G098500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1989.t1 is derived from g8852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14076116	14083659	.	-	.	Ledus.S2G187100
Ledus.S2	AUGUSTUS	transcript	14076116	14083659	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	stop_codon	14076113	14076115	.	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14076116	14076439	0.96	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14076116	14076439	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14076440	14076526	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14076527	14076602	1	-	1	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14076527	14076602	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14076603	14076714	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14076715	14076800	0.98	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14076715	14076800	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14076801	14076885	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14076886	14076981	1	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14076886	14076981	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14076982	14077192	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14077193	14077338	1	-	2	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14077193	14077338	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14077339	14077431	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14077432	14077556	1	-	1	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14077432	14077556	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14077557	14077648	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14077649	14077769	0.99	-	2	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14077649	14077769	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14077770	14077878	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14077879	14078313	0.85	-	2	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14077879	14078313	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14078314	14078501	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14078502	14079128	0.99	-	2	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14078502	14079128	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14079129	14079235	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14079236	14079419	1	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14079236	14079419	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14079420	14079514	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14079515	14079874	0.56	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14079515	14079874	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14079875	14080016	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14080017	14080127	1	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14080017	14080127	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14080128	14080339	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14080340	14080423	1	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14080340	14080423	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14080424	14080511	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14080512	14080613	0.99	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14080512	14080613	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14080614	14080719	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14080720	14080798	0.96	-	1	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14080720	14080798	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14080799	14080886	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14080887	14081294	0.67	-	1	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14080887	14081294	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14081295	14082212	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14082213	14082376	1	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14082213	14082376	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14082377	14082476	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14082477	14082593	1	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14082477	14082593	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14082594	14082707	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14082708	14082866	0.99	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14082708	14082866	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14082867	14082944	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14082945	14083027	1	-	2	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14082945	14083027	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14083028	14083114	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14083115	14083217	1	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14083115	14083217	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14083218	14083353	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14083354	14083659	0.97	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14083354	14083659	.	-	.	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	start_codon	14083657	14083659	.	-	0	transcript_id "Ledus.S2G187100.t1"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	transcript	14076116	14083659	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	stop_codon	14076113	14076115	.	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14076116	14076439	0.93	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14076116	14076439	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14076440	14076526	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14076527	14076602	1	-	1	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14076527	14076602	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14076603	14076714	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14076715	14076800	0.96	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14076715	14076800	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14076801	14076885	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14076886	14076981	1	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14076886	14076981	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14076982	14077055	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14077056	14077085	0.98	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14077056	14077085	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14077086	14077192	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14077193	14077338	0.95	-	2	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14077193	14077338	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14077339	14077431	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14077432	14077556	1	-	1	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14077432	14077556	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14077557	14077648	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14077649	14077769	1	-	2	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14077649	14077769	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14077770	14077878	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14077879	14078334	0.83	-	2	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14077879	14078334	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14078335	14078501	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14078502	14079128	0.99	-	2	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14078502	14079128	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14079129	14079235	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14079236	14079419	1	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14079236	14079419	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14079420	14079514	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14079515	14079874	0.45	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14079515	14079874	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14079875	14080016	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14080017	14080127	1	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14080017	14080127	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14080128	14080339	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14080340	14080423	1	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14080340	14080423	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14080424	14080511	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14080512	14080613	1	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14080512	14080613	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14080614	14080719	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14080720	14080798	0.94	-	1	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14080720	14080798	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14080799	14080886	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14080887	14081294	0.67	-	1	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14080887	14081294	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14081295	14082212	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14082213	14082376	1	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14082213	14082376	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14082377	14082476	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14082477	14082593	1	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14082477	14082593	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14082594	14082707	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14082708	14082866	0.99	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14082708	14082866	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14082867	14082944	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14082945	14083027	1	-	2	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14082945	14083027	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14083028	14083114	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14083115	14083217	1	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14083115	14083217	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	intron	14083218	14083353	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	CDS	14083354	14083659	0.98	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	exon	14083354	14083659	.	-	.	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
Ledus.S2	AUGUSTUS	start_codon	14083657	14083659	.	-	0	transcript_id "Ledus.S2G187100.t2"; gene_id "Ledus.S2G187100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12730.t1 is derived from g6352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14119653	14124786	.	+	.	Ledus.S4G188600
Ledus.S4	AUGUSTUS	transcript	14119653	14124786	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	start_codon	14119653	14119655	.	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14119653	14119778	0.68	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14119653	14119778	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14119779	14119878	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14119879	14119906	0.49	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14119879	14119906	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14119907	14120020	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14120021	14120121	1	+	2	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14120021	14120121	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14120122	14120265	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14120266	14120487	0.46	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14120266	14120487	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14120488	14120598	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14120599	14120842	0.66	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14120599	14120842	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14120843	14121031	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14121032	14121207	1	+	2	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14121032	14121207	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14121208	14121318	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14121319	14121401	1	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14121319	14121401	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14121402	14121599	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14121600	14121672	1	+	1	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14121600	14121672	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14121673	14121841	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14121842	14121907	1	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14121842	14121907	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14121908	14122006	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14122007	14122049	1	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14122007	14122049	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14122050	14122212	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14122213	14122352	1	+	2	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14122213	14122352	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14122353	14122435	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14122436	14122648	1	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14122436	14122648	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14122649	14122916	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14122917	14123001	1	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14122917	14123001	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14123002	14123144	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14123145	14123439	1	+	2	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14123145	14123439	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14123440	14123591	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14123592	14123877	1	+	1	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14123592	14123877	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14123878	14123990	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14123991	14124213	0.88	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14123991	14124213	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14124214	14124320	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14124321	14124508	0.98	+	2	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14124321	14124508	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	intron	14124509	14124639	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	CDS	14124640	14124786	0.68	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	exon	14124640	14124786	.	+	.	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
Ledus.S4	AUGUSTUS	stop_codon	14124787	14124789	.	+	0	transcript_id "Ledus.S4G188600.t1"; gene_id "Ledus.S4G188600"
# This transcript jg11885.t2 is derived from g5504.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11886.t1 is derived from g5505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7541743	7542369	.	+	.	Ledus.S4G104200
Ledus.S4	AUGUSTUS	transcript	7541743	7542369	.	+	.	transcript_id "Ledus.S4G104200.t1"; gene_id "Ledus.S4G104200"
Ledus.S4	AUGUSTUS	start_codon	7541743	7541745	.	+	0	transcript_id "Ledus.S4G104200.t1"; gene_id "Ledus.S4G104200"
Ledus.S4	AUGUSTUS	CDS	7541743	7542369	0.7	+	0	transcript_id "Ledus.S4G104200.t1"; gene_id "Ledus.S4G104200"
Ledus.S4	AUGUSTUS	exon	7541743	7542369	.	+	.	transcript_id "Ledus.S4G104200.t1"; gene_id "Ledus.S4G104200"
Ledus.S4	AUGUSTUS	stop_codon	7542370	7542372	.	+	0	transcript_id "Ledus.S4G104200.t1"; gene_id "Ledus.S4G104200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5920.t1 is derived from g3363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27857217	27861060	.	+	.	Ledus.S1G334100
Ledus.S1	AUGUSTUS	transcript	27857217	27861060	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	start_codon	27857217	27857219	.	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27857217	27857241	0.91	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27857217	27857241	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27857242	27857341	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27857342	27857562	1	+	2	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27857342	27857562	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27857563	27857652	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27857653	27857792	1	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27857653	27857792	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27857793	27857921	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27857922	27857994	1	+	1	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27857922	27857994	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27857995	27858133	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27858134	27858235	1	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27858134	27858235	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27858236	27858329	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27858330	27858545	1	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27858330	27858545	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27858546	27858645	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27858646	27858726	1	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27858646	27858726	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27858727	27858820	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27858821	27858904	1	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27858821	27858904	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27858905	27858994	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27858995	27859099	1	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27858995	27859099	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27859100	27859220	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27859221	27859399	1	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27859221	27859399	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27859400	27859547	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27859548	27859632	1	+	1	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27859548	27859632	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27859633	27859713	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27859714	27859897	1	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27859714	27859897	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27859898	27860039	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27860040	27860109	1	+	2	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27860040	27860109	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27860110	27860202	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27860203	27860272	1	+	1	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27860203	27860272	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27860273	27860429	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27860430	27860519	1	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27860430	27860519	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27860520	27860610	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27860611	27860679	1	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27860611	27860679	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27860680	27860765	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27860766	27860864	1	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27860766	27860864	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27860865	27860952	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27860953	27861060	1	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27860953	27861060	.	+	.	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	stop_codon	27861061	27861063	.	+	0	transcript_id "Ledus.S1G334100.t1"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	transcript	27857217	27861060	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	start_codon	27857217	27857219	.	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27857217	27857249	0.65	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27857217	27857249	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27857250	27857341	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27857342	27857391	0.79	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27857342	27857391	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27857392	27857489	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27857490	27857562	0.79	+	1	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27857490	27857562	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27857563	27857652	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27857653	27857792	1	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27857653	27857792	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27857793	27857921	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27857922	27857994	1	+	1	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27857922	27857994	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27857995	27858133	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27858134	27858235	1	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27858134	27858235	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27858236	27858329	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27858330	27858545	1	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27858330	27858545	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27858546	27858645	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27858646	27858726	1	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27858646	27858726	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27858727	27858820	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27858821	27858904	1	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27858821	27858904	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27858905	27858994	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27858995	27859099	1	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27858995	27859099	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27859100	27859220	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27859221	27859399	1	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27859221	27859399	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27859400	27859547	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27859548	27859632	1	+	1	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27859548	27859632	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27859633	27859713	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27859714	27859897	1	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27859714	27859897	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27859898	27860039	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27860040	27860109	1	+	2	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27860040	27860109	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27860110	27860202	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27860203	27860272	1	+	1	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27860203	27860272	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27860273	27860429	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27860430	27860519	1	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27860430	27860519	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27860520	27860610	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27860611	27860679	1	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27860611	27860679	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27860680	27860765	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27860766	27860864	1	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27860766	27860864	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	intron	27860865	27860952	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	CDS	27860953	27861060	1	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	exon	27860953	27861060	.	+	.	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
Ledus.S1	AUGUSTUS	stop_codon	27861061	27861063	.	+	0	transcript_id "Ledus.S1G334100.t2"; gene_id "Ledus.S1G334100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9804.t1 is derived from g10834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9956348	9957121	.	+	.	Ledus.S3G128100
Ledus.S3	AUGUSTUS	transcript	9956348	9957121	.	+	.	transcript_id "Ledus.S3G128100.t1"; gene_id "Ledus.S3G128100"
Ledus.S3	AUGUSTUS	start_codon	9956348	9956350	.	+	0	transcript_id "Ledus.S3G128100.t1"; gene_id "Ledus.S3G128100"
Ledus.S3	AUGUSTUS	CDS	9956348	9956747	0.58	+	0	transcript_id "Ledus.S3G128100.t1"; gene_id "Ledus.S3G128100"
Ledus.S3	AUGUSTUS	exon	9956348	9956747	.	+	.	transcript_id "Ledus.S3G128100.t1"; gene_id "Ledus.S3G128100"
Ledus.S3	AUGUSTUS	intron	9956748	9956822	.	+	.	transcript_id "Ledus.S3G128100.t1"; gene_id "Ledus.S3G128100"
Ledus.S3	AUGUSTUS	CDS	9956823	9957121	1	+	2	transcript_id "Ledus.S3G128100.t1"; gene_id "Ledus.S3G128100"
Ledus.S3	AUGUSTUS	exon	9956823	9957121	.	+	.	transcript_id "Ledus.S3G128100.t1"; gene_id "Ledus.S3G128100"
Ledus.S3	AUGUSTUS	stop_codon	9957122	9957124	.	+	0	transcript_id "Ledus.S3G128100.t1"; gene_id "Ledus.S3G128100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2166.t1 is derived from g9029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15486295	15487356	.	-	.	Ledus.S2G204800
Ledus.S2	AUGUSTUS	transcript	15486295	15487356	.	-	.	transcript_id "Ledus.S2G204800.t1"; gene_id "Ledus.S2G204800"
Ledus.S2	AUGUSTUS	stop_codon	15486292	15486294	.	-	0	transcript_id "Ledus.S2G204800.t1"; gene_id "Ledus.S2G204800"
Ledus.S2	AUGUSTUS	CDS	15486295	15487356	0.97	-	0	transcript_id "Ledus.S2G204800.t1"; gene_id "Ledus.S2G204800"
Ledus.S2	AUGUSTUS	exon	15486295	15487356	.	-	.	transcript_id "Ledus.S2G204800.t1"; gene_id "Ledus.S2G204800"
Ledus.S2	AUGUSTUS	start_codon	15487354	15487356	.	-	0	transcript_id "Ledus.S2G204800.t1"; gene_id "Ledus.S2G204800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4687.t1 is derived from g2125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19024521	19028033	.	-	.	Ledus.S1G210800
Ledus.S1	AUGUSTUS	transcript	19024521	19028033	.	-	.	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	stop_codon	19024518	19024520	.	-	0	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	CDS	19024521	19024922	0.54	-	0	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	exon	19024521	19024922	.	-	.	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	intron	19024923	19025027	.	-	.	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	CDS	19025028	19025513	1	-	0	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	exon	19025028	19025513	.	-	.	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	intron	19025514	19025670	.	-	.	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	CDS	19025671	19025793	1	-	0	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	exon	19025671	19025793	.	-	.	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	intron	19025794	19025912	.	-	.	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	CDS	19025913	19026167	1	-	0	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	exon	19025913	19026167	.	-	.	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	intron	19026168	19026322	.	-	.	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	CDS	19026323	19027717	1	-	0	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	exon	19026323	19027717	.	-	.	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	intron	19027718	19027811	.	-	.	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	CDS	19027812	19028033	0.29	-	0	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	exon	19027812	19028033	.	-	.	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
Ledus.S1	AUGUSTUS	start_codon	19028031	19028033	.	-	0	transcript_id "Ledus.S1G210800.t1"; gene_id "Ledus.S1G210800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11322.t1 is derived from g4940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3583786	3586038	.	-	.	Ledus.S4G047800
Ledus.S4	AUGUSTUS	transcript	3583786	3586038	.	-	.	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	stop_codon	3583783	3583785	.	-	0	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	CDS	3583786	3585038	0.97	-	2	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	exon	3583786	3585038	.	-	.	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	intron	3585039	3585134	.	-	.	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	CDS	3585135	3585455	0.99	-	2	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	exon	3585135	3585455	.	-	.	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	intron	3585456	3585537	.	-	.	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	CDS	3585538	3585620	0.99	-	1	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	exon	3585538	3585620	.	-	.	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	intron	3585621	3585719	.	-	.	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	CDS	3585720	3585752	0.9	-	1	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	exon	3585720	3585752	.	-	.	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	intron	3585753	3585895	.	-	.	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	CDS	3585896	3586038	0.57	-	0	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	exon	3585896	3586038	.	-	.	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
Ledus.S4	AUGUSTUS	start_codon	3586036	3586038	.	-	0	transcript_id "Ledus.S4G047800.t1"; gene_id "Ledus.S4G047800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8775.t1 is derived from g9805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1910222	1916031	.	+	.	Ledus.S3G025200
Ledus.S3	AUGUSTUS	transcript	1910222	1916031	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	start_codon	1910222	1910224	.	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1910222	1910224	0.68	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1910222	1910224	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1910225	1910344	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1910345	1910385	0.69	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1910345	1910385	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1910386	1910514	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1910515	1910782	1	+	1	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1910515	1910782	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1910783	1911084	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1911085	1911181	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1911085	1911181	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1911182	1911263	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1911264	1911384	1	+	2	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1911264	1911384	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1911385	1911522	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1911523	1911708	0.95	+	1	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1911523	1911708	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1911709	1911813	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1911814	1911901	0.99	+	1	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1911814	1911901	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1911902	1912107	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1912108	1912164	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1912108	1912164	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1912165	1912258	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1912259	1912348	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1912259	1912348	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1912349	1912452	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1912453	1912575	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1912453	1912575	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1912576	1912748	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1912749	1912823	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1912749	1912823	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1912824	1912897	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1912898	1912957	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1912898	1912957	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1912958	1913038	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1913039	1913155	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1913039	1913155	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1913156	1913261	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1913262	1913501	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1913262	1913501	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1913502	1913589	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1913590	1913658	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1913590	1913658	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1913659	1913831	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1913832	1913921	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1913832	1913921	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1913922	1914163	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1914164	1914253	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1914164	1914253	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1914254	1914395	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1914396	1914476	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1914396	1914476	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1914477	1914801	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1914802	1914870	1	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1914802	1914870	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1914871	1915008	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1915009	1915089	0.76	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1915009	1915089	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1915090	1915204	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1915205	1915312	0.78	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1915205	1915312	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1915313	1915423	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1915424	1915527	0.96	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1915424	1915527	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1915528	1915626	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1915627	1915740	1	+	1	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1915627	1915740	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	intron	1915741	1915823	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	CDS	1915824	1916031	0.72	+	1	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	exon	1915824	1916031	.	+	.	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
Ledus.S3	AUGUSTUS	stop_codon	1916032	1916034	.	+	0	transcript_id "Ledus.S3G025200.t1"; gene_id "Ledus.S3G025200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg809.t1 is derived from g7670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5234969	5238147	.	-	.	Ledus.S2G069100
Ledus.S2	AUGUSTUS	transcript	5234969	5238147	.	-	.	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	stop_codon	5234966	5234968	.	-	0	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	CDS	5234969	5237619	0.96	-	2	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	exon	5234969	5237619	.	-	.	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	intron	5237620	5237703	.	-	.	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	CDS	5237704	5237749	1	-	0	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	exon	5237704	5237749	.	-	.	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	intron	5237750	5237820	.	-	.	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	CDS	5237821	5237907	1	-	0	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	exon	5237821	5237907	.	-	.	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	intron	5237908	5238000	.	-	.	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	CDS	5238001	5238147	0.53	-	0	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	exon	5238001	5238147	.	-	.	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
Ledus.S2	AUGUSTUS	start_codon	5238145	5238147	.	-	0	transcript_id "Ledus.S2G069100.t1"; gene_id "Ledus.S2G069100"
# This transcript jg10763.t2 is derived from g11795.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10763.t3 is derived from g11795.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10764.t1 is derived from g11796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17529240	17538827	.	-	.	Ledus.S3G224100
Ledus.S3	AUGUSTUS	transcript	17529240	17538827	.	-	.	transcript_id "Ledus.S3G224100.t1"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	stop_codon	17529237	17529239	.	-	0	transcript_id "Ledus.S3G224100.t1"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	CDS	17529240	17538827	1	-	0	transcript_id "Ledus.S3G224100.t1"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	exon	17529240	17538827	.	-	.	transcript_id "Ledus.S3G224100.t1"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	start_codon	17538825	17538827	.	-	0	transcript_id "Ledus.S3G224100.t1"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	transcript	17529240	17530037	.	-	.	transcript_id "Ledus.S3G224100.t2"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	stop_codon	17529237	17529239	.	-	0	transcript_id "Ledus.S3G224100.t2"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	CDS	17529240	17530037	0.69	-	0	transcript_id "Ledus.S3G224100.t2"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	exon	17529240	17530037	.	-	.	transcript_id "Ledus.S3G224100.t2"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	start_codon	17530035	17530037	.	-	0	transcript_id "Ledus.S3G224100.t2"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	transcript	17529240	17533151	.	-	.	transcript_id "Ledus.S3G224100.t3"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	stop_codon	17529237	17529239	.	-	0	transcript_id "Ledus.S3G224100.t3"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	CDS	17529240	17533151	0.55	-	0	transcript_id "Ledus.S3G224100.t3"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	exon	17529240	17533151	.	-	.	transcript_id "Ledus.S3G224100.t3"; gene_id "Ledus.S3G224100"
Ledus.S3	AUGUSTUS	start_codon	17533149	17533151	.	-	0	transcript_id "Ledus.S3G224100.t3"; gene_id "Ledus.S3G224100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5212.t1 is derived from g2651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22483371	22485904	.	+	.	Ledus.S1G263300
Ledus.S1	AUGUSTUS	transcript	22483371	22485904	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	start_codon	22483371	22483373	.	+	0	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	CDS	22483371	22483450	0.81	+	0	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	exon	22483371	22483450	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	intron	22483451	22483574	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	CDS	22483575	22483770	1	+	1	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	exon	22483575	22483770	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	intron	22483771	22483936	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	CDS	22483937	22484062	1	+	0	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	exon	22483937	22484062	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	intron	22484063	22484143	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	CDS	22484144	22484305	1	+	0	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	exon	22484144	22484305	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	intron	22484306	22484487	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	CDS	22484488	22484623	1	+	0	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	exon	22484488	22484623	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	intron	22484624	22484709	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	CDS	22484710	22484751	1	+	2	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	exon	22484710	22484751	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	intron	22484752	22484849	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	CDS	22484850	22485044	1	+	2	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	exon	22484850	22485044	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	intron	22485045	22485258	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	CDS	22485259	22485307	1	+	2	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	exon	22485259	22485307	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	intron	22485308	22485483	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	CDS	22485484	22485561	0.87	+	1	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	exon	22485484	22485561	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	intron	22485562	22485665	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	CDS	22485666	22485746	1	+	1	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	exon	22485666	22485746	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	intron	22485747	22485903	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	CDS	22485904	22485904	1	+	1	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	exon	22485904	22485904	.	+	.	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
Ledus.S1	AUGUSTUS	stop_codon	22485905	22485907	.	+	0	transcript_id "Ledus.S1G263300.t1"; gene_id "Ledus.S1G263300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1655.t1 is derived from g8516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11728470	11729478	.	+	.	Ledus.S2G153700
Ledus.S2	AUGUSTUS	transcript	11728470	11729478	.	+	.	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	start_codon	11728470	11728472	.	+	0	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	CDS	11728470	11728724	0.62	+	0	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	exon	11728470	11728724	.	+	.	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	intron	11728725	11728807	.	+	.	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	CDS	11728808	11728845	0.97	+	0	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	exon	11728808	11728845	.	+	.	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	intron	11728846	11729069	.	+	.	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	CDS	11729070	11729120	0.99	+	1	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	exon	11729070	11729120	.	+	.	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	intron	11729121	11729266	.	+	.	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	CDS	11729267	11729297	0.98	+	1	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	exon	11729267	11729297	.	+	.	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	intron	11729298	11729460	.	+	.	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	CDS	11729461	11729478	0.99	+	0	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	exon	11729461	11729478	.	+	.	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
Ledus.S2	AUGUSTUS	stop_codon	11729479	11729481	.	+	0	transcript_id "Ledus.S2G153700.t1"; gene_id "Ledus.S2G153700"
# This transcript jg11137.t2 is derived from g4755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11138.t1 is derived from g4756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2124841	2127636	.	+	.	Ledus.S4G029400
Ledus.S4	AUGUSTUS	transcript	2124841	2127636	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	start_codon	2124841	2124843	.	+	0	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	CDS	2124841	2124913	0.64	+	0	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	exon	2124841	2124913	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	intron	2124914	2125186	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	CDS	2125187	2125311	0.3	+	2	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	exon	2125187	2125311	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	intron	2125312	2125550	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	CDS	2125551	2125607	1	+	0	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	exon	2125551	2125607	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	intron	2125608	2125700	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	CDS	2125701	2125809	0.97	+	0	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	exon	2125701	2125809	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	intron	2125810	2126000	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	CDS	2126001	2126107	0.95	+	2	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	exon	2126001	2126107	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	intron	2126108	2126312	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	CDS	2126313	2126401	1	+	0	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	exon	2126313	2126401	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	intron	2126402	2126548	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	CDS	2126549	2126828	1	+	1	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	exon	2126549	2126828	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	intron	2126829	2126912	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	CDS	2126913	2127164	0.99	+	0	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	exon	2126913	2127164	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	intron	2127165	2127291	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	CDS	2127292	2127352	0.75	+	0	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	exon	2127292	2127352	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	intron	2127353	2127451	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	CDS	2127452	2127636	0.62	+	2	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	exon	2127452	2127636	.	+	.	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
Ledus.S4	AUGUSTUS	stop_codon	2127637	2127639	.	+	0	transcript_id "Ledus.S4G029400.t1"; gene_id "Ledus.S4G029400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3504.t1 is derived from g939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8903151	8903429	.	+	.	Ledus.S1G092500
Ledus.S1	AUGUSTUS	transcript	8903151	8903429	.	+	.	transcript_id "Ledus.S1G092500.t1"; gene_id "Ledus.S1G092500"
Ledus.S1	AUGUSTUS	start_codon	8903151	8903153	.	+	0	transcript_id "Ledus.S1G092500.t1"; gene_id "Ledus.S1G092500"
Ledus.S1	AUGUSTUS	CDS	8903151	8903429	0.47	+	0	transcript_id "Ledus.S1G092500.t1"; gene_id "Ledus.S1G092500"
Ledus.S1	AUGUSTUS	exon	8903151	8903429	.	+	.	transcript_id "Ledus.S1G092500.t1"; gene_id "Ledus.S1G092500"
Ledus.S1	AUGUSTUS	stop_codon	8903430	8903432	.	+	0	transcript_id "Ledus.S1G092500.t1"; gene_id "Ledus.S1G092500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5805.t1 is derived from g3247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27022516	27024309	.	-	.	Ledus.S1G322600
Ledus.S1	AUGUSTUS	transcript	27022516	27024309	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	stop_codon	27022513	27022515	.	-	0	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	CDS	27022516	27022969	1	-	1	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	exon	27022516	27022969	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	intron	27022970	27023072	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	CDS	27023073	27023194	1	-	0	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	exon	27023073	27023194	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	intron	27023195	27023332	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	CDS	27023333	27023436	1	-	2	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	exon	27023333	27023436	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	intron	27023437	27023568	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	CDS	27023569	27023599	1	-	0	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	exon	27023569	27023599	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	intron	27023600	27023713	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	CDS	27023714	27023844	1	-	2	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	exon	27023714	27023844	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	intron	27023845	27023988	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	CDS	27023989	27024086	1	-	1	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	exon	27023989	27024086	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	intron	27024087	27024217	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	CDS	27024218	27024309	1	-	0	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	exon	27024218	27024309	.	-	.	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
Ledus.S1	AUGUSTUS	start_codon	27024307	27024309	.	-	0	transcript_id "Ledus.S1G322600.t1"; gene_id "Ledus.S1G322600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4055.t1 is derived from g1491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14364373	14368236	.	+	.	Ledus.S1G147600
Ledus.S1	AUGUSTUS	transcript	14364373	14368236	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	start_codon	14364373	14364375	.	+	0	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	CDS	14364373	14364516	1	+	0	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	exon	14364373	14364516	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	intron	14364517	14364597	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	CDS	14364598	14364645	0.61	+	0	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	exon	14364598	14364645	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	intron	14364646	14364733	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	CDS	14364734	14364815	1	+	0	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	exon	14364734	14364815	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	intron	14364816	14364982	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	CDS	14364983	14365420	0.86	+	2	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	exon	14364983	14365420	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	intron	14365421	14365596	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	CDS	14365597	14365746	0.51	+	2	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	exon	14365597	14365746	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	intron	14365747	14365947	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	CDS	14365948	14366153	0.5	+	2	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	exon	14365948	14366153	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	intron	14366154	14366248	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	CDS	14366249	14366344	0.98	+	0	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	exon	14366249	14366344	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	intron	14366345	14366449	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	CDS	14366450	14366542	0.89	+	0	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	exon	14366450	14366542	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	intron	14366543	14366638	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	CDS	14366639	14366750	0.95	+	0	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	exon	14366639	14366750	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	intron	14366751	14366851	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	CDS	14366852	14367084	0.98	+	2	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	exon	14366852	14367084	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	intron	14367085	14367171	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	CDS	14367172	14368006	0.99	+	0	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	exon	14367172	14368006	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	intron	14368007	14368102	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	CDS	14368103	14368236	0.99	+	2	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	exon	14368103	14368236	.	+	.	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
Ledus.S1	AUGUSTUS	stop_codon	14368237	14368239	.	+	0	transcript_id "Ledus.S1G147600.t1"; gene_id "Ledus.S1G147600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3282.t1 is derived from g717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7238401	7239914	.	+	.	Ledus.S1G070300
Ledus.S1	AUGUSTUS	transcript	7238401	7239914	.	+	.	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	start_codon	7238401	7238403	.	+	0	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	CDS	7238401	7238509	0.63	+	0	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	exon	7238401	7238509	.	+	.	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	intron	7238510	7239299	.	+	.	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	CDS	7239300	7239409	1	+	2	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	exon	7239300	7239409	.	+	.	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	intron	7239410	7239657	.	+	.	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	CDS	7239658	7239700	1	+	0	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	exon	7239658	7239700	.	+	.	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	intron	7239701	7239882	.	+	.	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	CDS	7239883	7239914	1	+	2	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	exon	7239883	7239914	.	+	.	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
Ledus.S1	AUGUSTUS	stop_codon	7239915	7239917	.	+	0	transcript_id "Ledus.S1G070300.t1"; gene_id "Ledus.S1G070300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11490.t1 is derived from g5108.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4895285	4898965	.	+	.	Ledus.S4G064600
Ledus.S4	AUGUSTUS	transcript	4895285	4898965	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	start_codon	4895285	4895287	.	+	0	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4895285	4895313	0.79	+	0	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4895285	4895313	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4895314	4895454	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4895455	4895520	0.76	+	1	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4895455	4895520	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4895521	4896303	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4896304	4896332	0.93	+	1	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4896304	4896332	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4896333	4896573	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4896574	4896708	0.51	+	2	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4896574	4896708	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4896709	4896898	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4896899	4897008	1	+	2	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4896899	4897008	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4897009	4897080	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4897081	4897203	1	+	0	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4897081	4897203	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4897204	4897351	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4897352	4897439	1	+	0	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4897352	4897439	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4897440	4897602	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4897603	4897677	1	+	2	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4897603	4897677	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4897678	4897848	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4897849	4897934	1	+	2	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4897849	4897934	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4897935	4898124	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4898125	4898265	1	+	0	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4898125	4898265	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4898266	4898351	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4898352	4898421	1	+	0	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4898352	4898421	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4898422	4898497	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4898498	4898801	1	+	2	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4898498	4898801	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4898802	4898889	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4898890	4898965	0.94	+	1	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4898890	4898965	.	+	.	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	stop_codon	4898966	4898968	.	+	0	transcript_id "Ledus.S4G064600.t1"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	transcript	4895676	4898965	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	start_codon	4895676	4895678	.	+	0	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4895676	4895769	0.32	+	0	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4895676	4895769	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4895770	4896303	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4896304	4896319	0.78	+	2	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4896304	4896319	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4896320	4896490	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4896491	4896708	0.55	+	1	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4896491	4896708	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4896709	4896898	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4896899	4897008	1	+	2	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4896899	4897008	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4897009	4897080	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4897081	4897203	1	+	0	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4897081	4897203	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4897204	4897351	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4897352	4897439	1	+	0	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4897352	4897439	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4897440	4897602	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4897603	4897677	1	+	2	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4897603	4897677	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4897678	4897848	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4897849	4897934	1	+	2	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4897849	4897934	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4897935	4898124	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4898125	4898265	1	+	0	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4898125	4898265	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4898266	4898351	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4898352	4898421	1	+	0	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4898352	4898421	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4898422	4898497	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4898498	4898801	1	+	2	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4898498	4898801	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	intron	4898802	4898889	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	CDS	4898890	4898965	0.95	+	1	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	exon	4898890	4898965	.	+	.	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
Ledus.S4	AUGUSTUS	stop_codon	4898966	4898968	.	+	0	transcript_id "Ledus.S4G064600.t2"; gene_id "Ledus.S4G064600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5039.t1 is derived from g2478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21249731	21251353	.	-	.	Ledus.S1G246000
Ledus.S1	AUGUSTUS	transcript	21249731	21251353	.	-	.	transcript_id "Ledus.S1G246000.t1"; gene_id "Ledus.S1G246000"
Ledus.S1	AUGUSTUS	stop_codon	21249728	21249730	.	-	0	transcript_id "Ledus.S1G246000.t1"; gene_id "Ledus.S1G246000"
Ledus.S1	AUGUSTUS	CDS	21249731	21251353	0.79	-	0	transcript_id "Ledus.S1G246000.t1"; gene_id "Ledus.S1G246000"
Ledus.S1	AUGUSTUS	exon	21249731	21251353	.	-	.	transcript_id "Ledus.S1G246000.t1"; gene_id "Ledus.S1G246000"
Ledus.S1	AUGUSTUS	start_codon	21251351	21251353	.	-	0	transcript_id "Ledus.S1G246000.t1"; gene_id "Ledus.S1G246000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2363.t1 is derived from g9226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17563321	17569103	.	-	.	Ledus.S2G224500
Ledus.S2	AUGUSTUS	transcript	17563321	17569103	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	stop_codon	17563318	17563320	.	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17563321	17563359	0.66	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17563321	17563359	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17563360	17563563	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17563564	17563653	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17563564	17563653	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17563654	17563813	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17563814	17563904	1	-	1	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17563814	17563904	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17563905	17564025	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17564026	17564225	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17564026	17564225	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17564226	17564347	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17564348	17564425	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17564348	17564425	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17564426	17564674	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17564675	17564788	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17564675	17564788	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17564789	17565047	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17565048	17565143	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17565048	17565143	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17565144	17565357	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17565358	17565483	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17565358	17565483	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17565484	17565756	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17565757	17565853	1	-	1	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17565757	17565853	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17565854	17566215	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17566216	17566292	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17566216	17566292	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17566293	17566390	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17566391	17566486	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17566391	17566486	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17566487	17566588	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17566589	17566672	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17566589	17566672	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17566673	17567006	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17567007	17567195	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17567007	17567195	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17567196	17567347	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17567348	17567476	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17567348	17567476	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17567477	17567611	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17567612	17567644	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17567612	17567644	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17567645	17567775	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17567776	17567872	0.76	-	1	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17567776	17567872	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17567873	17567973	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17567974	17568024	1	-	1	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17567974	17568024	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17568025	17568164	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17568165	17568243	1	-	2	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17568165	17568243	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17568244	17568502	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17568503	17568584	1	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17568503	17568584	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17568585	17568876	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17568877	17568935	0.81	-	2	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17568877	17568935	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	intron	17568936	17569039	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	CDS	17569040	17569103	0.75	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	exon	17569040	17569103	.	-	.	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
Ledus.S2	AUGUSTUS	start_codon	17569101	17569103	.	-	0	transcript_id "Ledus.S2G224500.t1"; gene_id "Ledus.S2G224500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10303.t1 is derived from g11333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14157285	14158139	.	-	.	Ledus.S3G178000
Ledus.S3	AUGUSTUS	transcript	14157285	14158139	.	-	.	transcript_id "Ledus.S3G178000.t1"; gene_id "Ledus.S3G178000"
Ledus.S3	AUGUSTUS	stop_codon	14157282	14157284	.	-	0	transcript_id "Ledus.S3G178000.t1"; gene_id "Ledus.S3G178000"
Ledus.S3	AUGUSTUS	CDS	14157285	14157907	1	-	2	transcript_id "Ledus.S3G178000.t1"; gene_id "Ledus.S3G178000"
Ledus.S3	AUGUSTUS	exon	14157285	14157907	.	-	.	transcript_id "Ledus.S3G178000.t1"; gene_id "Ledus.S3G178000"
Ledus.S3	AUGUSTUS	intron	14157908	14158066	.	-	.	transcript_id "Ledus.S3G178000.t1"; gene_id "Ledus.S3G178000"
Ledus.S3	AUGUSTUS	CDS	14158067	14158139	1	-	0	transcript_id "Ledus.S3G178000.t1"; gene_id "Ledus.S3G178000"
Ledus.S3	AUGUSTUS	exon	14158067	14158139	.	-	.	transcript_id "Ledus.S3G178000.t1"; gene_id "Ledus.S3G178000"
Ledus.S3	AUGUSTUS	start_codon	14158137	14158139	.	-	0	transcript_id "Ledus.S3G178000.t1"; gene_id "Ledus.S3G178000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8597.t1 is derived from g9627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	499189	503856	.	-	.	Ledus.S3G007400
Ledus.S3	AUGUSTUS	transcript	499189	503856	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	stop_codon	499186	499188	.	-	0	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	499189	499536	1	-	0	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	499189	499536	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	499537	499621	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	499622	499842	1	-	2	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	499622	499842	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	499843	499914	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	499915	500116	1	-	0	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	499915	500116	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	500117	500194	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	500195	500301	1	-	2	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	500195	500301	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	500302	500387	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	500388	500586	1	-	0	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	500388	500586	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	500587	500660	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	500661	500838	1	-	1	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	500661	500838	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	500839	501083	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	501084	501378	0.1	-	2	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	501084	501378	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	501379	501440	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	501441	501513	0.72	-	0	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	501441	501513	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	501514	501639	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	501640	501782	0.82	-	2	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	501640	501782	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	501783	501978	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	501979	502051	0.25	-	0	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	501979	502051	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	502052	502170	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	502171	502284	0.32	-	0	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	502171	502284	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	502285	502423	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	502424	502524	0.6	-	2	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	502424	502524	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	502525	502591	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	502592	502664	0.91	-	0	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	502592	502664	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	502665	502787	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	502788	502972	0.42	-	2	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	502788	502972	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	502973	503136	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	503137	503209	0.61	-	0	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	503137	503209	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	503210	503325	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	503326	503516	0.15	-	2	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	503326	503516	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	intron	503517	503588	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	CDS	503589	503856	0.32	-	0	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	exon	503589	503856	.	-	.	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
Ledus.S3	AUGUSTUS	start_codon	503854	503856	.	-	0	transcript_id "Ledus.S3G007400.t1"; gene_id "Ledus.S3G007400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13115.t1 is derived from g6925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6185109	6186170	.	+	.	Ledus.S6G017700
Ledus.S6	AUGUSTUS	transcript	6185109	6186170	.	+	.	transcript_id "Ledus.S6G017700.t1"; gene_id "Ledus.S6G017700"
Ledus.S6	AUGUSTUS	start_codon	6185109	6185111	.	+	0	transcript_id "Ledus.S6G017700.t1"; gene_id "Ledus.S6G017700"
Ledus.S6	AUGUSTUS	CDS	6185109	6185345	0.49	+	0	transcript_id "Ledus.S6G017700.t1"; gene_id "Ledus.S6G017700"
Ledus.S6	AUGUSTUS	exon	6185109	6185345	.	+	.	transcript_id "Ledus.S6G017700.t1"; gene_id "Ledus.S6G017700"
Ledus.S6	AUGUSTUS	intron	6185346	6185900	.	+	.	transcript_id "Ledus.S6G017700.t1"; gene_id "Ledus.S6G017700"
Ledus.S6	AUGUSTUS	CDS	6185901	6186170	0.94	+	0	transcript_id "Ledus.S6G017700.t1"; gene_id "Ledus.S6G017700"
Ledus.S6	AUGUSTUS	exon	6185901	6186170	.	+	.	transcript_id "Ledus.S6G017700.t1"; gene_id "Ledus.S6G017700"
Ledus.S6	AUGUSTUS	stop_codon	6186171	6186173	.	+	0	transcript_id "Ledus.S6G017700.t1"; gene_id "Ledus.S6G017700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10438.t1 is derived from g11468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15153431	15154431	.	+	.	Ledus.S3G191500
Ledus.S3	AUGUSTUS	transcript	15153431	15154431	.	+	.	transcript_id "Ledus.S3G191500.t1"; gene_id "Ledus.S3G191500"
Ledus.S3	AUGUSTUS	start_codon	15153431	15153433	.	+	0	transcript_id "Ledus.S3G191500.t1"; gene_id "Ledus.S3G191500"
Ledus.S3	AUGUSTUS	CDS	15153431	15153497	0.93	+	0	transcript_id "Ledus.S3G191500.t1"; gene_id "Ledus.S3G191500"
Ledus.S3	AUGUSTUS	exon	15153431	15153497	.	+	.	transcript_id "Ledus.S3G191500.t1"; gene_id "Ledus.S3G191500"
Ledus.S3	AUGUSTUS	intron	15153498	15153585	.	+	.	transcript_id "Ledus.S3G191500.t1"; gene_id "Ledus.S3G191500"
Ledus.S3	AUGUSTUS	CDS	15153586	15153836	0.98	+	2	transcript_id "Ledus.S3G191500.t1"; gene_id "Ledus.S3G191500"
Ledus.S3	AUGUSTUS	exon	15153586	15153836	.	+	.	transcript_id "Ledus.S3G191500.t1"; gene_id "Ledus.S3G191500"
Ledus.S3	AUGUSTUS	intron	15153837	15153909	.	+	.	transcript_id "Ledus.S3G191500.t1"; gene_id "Ledus.S3G191500"
Ledus.S3	AUGUSTUS	CDS	15153910	15154431	1	+	0	transcript_id "Ledus.S3G191500.t1"; gene_id "Ledus.S3G191500"
Ledus.S3	AUGUSTUS	exon	15153910	15154431	.	+	.	transcript_id "Ledus.S3G191500.t1"; gene_id "Ledus.S3G191500"
Ledus.S3	AUGUSTUS	stop_codon	15154432	15154434	.	+	0	transcript_id "Ledus.S3G191500.t1"; gene_id "Ledus.S3G191500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12956.t1 is derived from g6766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1031727	1032528	.	+	.	Ledus.S6G001800
Ledus.S6	AUGUSTUS	transcript	1031727	1032528	.	+	.	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	start_codon	1031727	1031729	.	+	0	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	CDS	1031727	1032093	0.99	+	0	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	exon	1031727	1032093	.	+	.	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	intron	1032094	1032188	.	+	.	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	CDS	1032189	1032222	1	+	2	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	exon	1032189	1032222	.	+	.	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	intron	1032223	1032317	.	+	.	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	CDS	1032318	1032355	0.54	+	1	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	exon	1032318	1032355	.	+	.	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	intron	1032356	1032499	.	+	.	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	CDS	1032500	1032528	0.54	+	2	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	exon	1032500	1032528	.	+	.	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
Ledus.S6	AUGUSTUS	stop_codon	1032529	1032531	.	+	0	transcript_id "Ledus.S6G001800.t1"; gene_id "Ledus.S6G001800"
# This transcript jg9426.t2 is derived from g10456.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9427.t1 is derived from g10457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6681514	6681834	.	+	.	Ledus.S3G090400
Ledus.S3	AUGUSTUS	transcript	6681514	6681834	.	+	.	transcript_id "Ledus.S3G090400.t1"; gene_id "Ledus.S3G090400"
Ledus.S3	AUGUSTUS	start_codon	6681514	6681516	.	+	0	transcript_id "Ledus.S3G090400.t1"; gene_id "Ledus.S3G090400"
Ledus.S3	AUGUSTUS	CDS	6681514	6681834	1	+	0	transcript_id "Ledus.S3G090400.t1"; gene_id "Ledus.S3G090400"
Ledus.S3	AUGUSTUS	exon	6681514	6681834	.	+	.	transcript_id "Ledus.S3G090400.t1"; gene_id "Ledus.S3G090400"
Ledus.S3	AUGUSTUS	stop_codon	6681835	6681837	.	+	0	transcript_id "Ledus.S3G090400.t1"; gene_id "Ledus.S3G090400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4008.t1 is derived from g1444.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14047197	14051744	.	+	.	Ledus.S1G142900
Ledus.S1	AUGUSTUS	transcript	14047197	14051744	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	start_codon	14047197	14047199	.	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14047197	14047382	0.92	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14047197	14047382	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14047383	14047533	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14047534	14047590	1	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14047534	14047590	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14047591	14047678	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14047679	14047738	1	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14047679	14047738	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14047739	14047847	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14047848	14047916	1	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14047848	14047916	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14047917	14048007	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14048008	14048100	1	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14048008	14048100	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14048101	14048222	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14048223	14048327	1	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14048223	14048327	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14048328	14048525	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14048526	14048539	0.93	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14048526	14048539	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14048540	14048664	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14048665	14048776	0.9	+	1	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14048665	14048776	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14048777	14048889	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14048890	14048995	1	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14048890	14048995	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14048996	14049080	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14049081	14049217	0.67	+	2	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14049081	14049217	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14049218	14049744	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14049745	14049767	0.45	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14049745	14049767	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14049768	14049850	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14049851	14049871	0.45	+	1	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14049851	14049871	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14049872	14050007	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14050008	14050061	0.61	+	1	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14050008	14050061	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14050062	14050145	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14050146	14050272	1	+	1	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14050146	14050272	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14050273	14050351	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14050352	14050531	1	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14050352	14050531	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14050532	14050615	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14050616	14050696	1	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14050616	14050696	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14050697	14050774	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14050775	14050938	1	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14050775	14050938	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14050939	14051091	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14051092	14051228	1	+	1	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14051092	14051228	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14051229	14051312	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14051313	14051428	1	+	2	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14051313	14051428	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14051429	14051507	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14051508	14051744	1	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14051508	14051744	.	+	.	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	stop_codon	14051745	14051747	.	+	0	transcript_id "Ledus.S1G142900.t1"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	transcript	14047197	14051744	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	start_codon	14047197	14047199	.	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14047197	14047382	0.94	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14047197	14047382	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14047383	14047533	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14047534	14047590	1	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14047534	14047590	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14047591	14047678	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14047679	14047738	1	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14047679	14047738	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14047739	14047847	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14047848	14047916	1	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14047848	14047916	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14047917	14048007	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14048008	14048100	1	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14048008	14048100	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14048101	14048222	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14048223	14048327	1	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14048223	14048327	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14048328	14048461	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14048462	14048539	0.66	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14048462	14048539	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14048540	14048641	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14048642	14048776	1	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14048642	14048776	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14048777	14048889	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14048890	14048995	1	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14048890	14048995	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14048996	14049080	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14049081	14049217	0.66	+	2	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14049081	14049217	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14049218	14049744	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14049745	14049767	0.44	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14049745	14049767	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14049768	14049850	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14049851	14049871	0.45	+	1	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14049851	14049871	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14049872	14050007	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14050008	14050061	0.47	+	1	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14050008	14050061	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14050062	14050145	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14050146	14050272	1	+	1	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14050146	14050272	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14050273	14050351	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14050352	14050531	1	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14050352	14050531	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14050532	14050615	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14050616	14050696	1	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14050616	14050696	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14050697	14050774	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14050775	14050938	1	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14050775	14050938	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14050939	14051091	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14051092	14051228	1	+	1	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14051092	14051228	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14051229	14051312	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14051313	14051428	1	+	2	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14051313	14051428	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	intron	14051429	14051507	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	CDS	14051508	14051744	1	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	exon	14051508	14051744	.	+	.	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
Ledus.S1	AUGUSTUS	stop_codon	14051745	14051747	.	+	0	transcript_id "Ledus.S1G142900.t2"; gene_id "Ledus.S1G142900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5200.t1 is derived from g2639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22436246	22437935	.	+	.	Ledus.S1G262100
Ledus.S1	AUGUSTUS	transcript	22436246	22437935	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	start_codon	22436246	22436248	.	+	0	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	CDS	22436246	22436593	0.91	+	0	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	exon	22436246	22436593	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	intron	22436594	22436685	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	CDS	22436686	22436826	1	+	0	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	exon	22436686	22436826	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	intron	22436827	22436924	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	CDS	22436925	22436987	1	+	0	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	exon	22436925	22436987	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	intron	22436988	22437072	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	CDS	22437073	22437162	1	+	0	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	exon	22437073	22437162	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	intron	22437163	22437266	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	CDS	22437267	22437389	1	+	0	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	exon	22437267	22437389	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	intron	22437390	22437467	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	CDS	22437468	22437555	1	+	0	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	exon	22437468	22437555	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	intron	22437556	22437654	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	CDS	22437655	22437729	1	+	2	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	exon	22437655	22437729	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	intron	22437730	22437819	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	CDS	22437820	22437935	0.83	+	2	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	exon	22437820	22437935	.	+	.	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
Ledus.S1	AUGUSTUS	stop_codon	22437936	22437938	.	+	0	transcript_id "Ledus.S1G262100.t1"; gene_id "Ledus.S1G262100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9122.t1 is derived from g10152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4690537	4693362	.	+	.	Ledus.S3G059900
Ledus.S3	AUGUSTUS	transcript	4690537	4693362	.	+	.	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	start_codon	4690537	4690539	.	+	0	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	CDS	4690537	4690657	0.99	+	0	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	exon	4690537	4690657	.	+	.	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	intron	4690658	4690851	.	+	.	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	CDS	4690852	4690919	1	+	2	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	exon	4690852	4690919	.	+	.	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	intron	4690920	4691045	.	+	.	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	CDS	4691046	4691625	1	+	0	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	exon	4691046	4691625	.	+	.	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	intron	4691626	4691802	.	+	.	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	CDS	4691803	4691919	1	+	2	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	exon	4691803	4691919	.	+	.	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	intron	4691920	4692106	.	+	.	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	CDS	4692107	4692188	1	+	2	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	exon	4692107	4692188	.	+	.	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	intron	4692189	4692314	.	+	.	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	CDS	4692315	4693362	0.94	+	1	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	exon	4692315	4693362	.	+	.	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
Ledus.S3	AUGUSTUS	stop_codon	4693363	4693365	.	+	0	transcript_id "Ledus.S3G059900.t1"; gene_id "Ledus.S3G059900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3338.t1 is derived from g773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7558881	7566048	.	+	.	Ledus.S1G075900
Ledus.S1	AUGUSTUS	transcript	7558881	7566048	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	start_codon	7558881	7558883	.	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7558881	7560617	0.96	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7558881	7560617	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7560618	7560740	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7560741	7560818	0.8	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7560741	7560818	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7560819	7560930	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7560931	7561020	0.99	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7560931	7561020	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7561021	7561138	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7561139	7561240	1	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7561139	7561240	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7561241	7561325	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7561326	7561385	1	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7561326	7561385	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7561386	7561501	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7561502	7561564	1	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7561502	7561564	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7561565	7561656	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7561657	7561752	1	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7561657	7561752	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7561753	7561928	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7561929	7562093	1	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7561929	7562093	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7562094	7562311	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7562312	7562485	0.85	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7562312	7562485	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7562486	7562589	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7562590	7562655	0.87	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7562590	7562655	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7562656	7562796	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7562797	7562895	1	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7562797	7562895	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7562896	7562975	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7562976	7563122	1	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7562976	7563122	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7563123	7563204	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7563205	7563255	0.99	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7563205	7563255	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7563256	7563423	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7563424	7563523	0.87	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7563424	7563523	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7563524	7563618	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7563619	7563814	0.71	+	2	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7563619	7563814	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7563815	7564217	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7564218	7564396	0.59	+	1	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7564218	7564396	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7564397	7564677	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7564678	7565066	0.99	+	2	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7564678	7565066	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7565067	7565149	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7565150	7565391	1	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7565150	7565391	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	intron	7565392	7565537	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	CDS	7565538	7566048	1	+	1	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	exon	7565538	7566048	.	+	.	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
Ledus.S1	AUGUSTUS	stop_codon	7566049	7566051	.	+	0	transcript_id "Ledus.S1G075900.t1"; gene_id "Ledus.S1G075900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg499.t1 is derived from g7360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2927306	2927901	.	+	.	Ledus.S2G038100
Ledus.S2	AUGUSTUS	transcript	2927306	2927901	.	+	.	transcript_id "Ledus.S2G038100.t1"; gene_id "Ledus.S2G038100"
Ledus.S2	AUGUSTUS	start_codon	2927306	2927308	.	+	0	transcript_id "Ledus.S2G038100.t1"; gene_id "Ledus.S2G038100"
Ledus.S2	AUGUSTUS	CDS	2927306	2927707	0.64	+	0	transcript_id "Ledus.S2G038100.t1"; gene_id "Ledus.S2G038100"
Ledus.S2	AUGUSTUS	exon	2927306	2927707	.	+	.	transcript_id "Ledus.S2G038100.t1"; gene_id "Ledus.S2G038100"
Ledus.S2	AUGUSTUS	intron	2927708	2927781	.	+	.	transcript_id "Ledus.S2G038100.t1"; gene_id "Ledus.S2G038100"
Ledus.S2	AUGUSTUS	CDS	2927782	2927901	1	+	0	transcript_id "Ledus.S2G038100.t1"; gene_id "Ledus.S2G038100"
Ledus.S2	AUGUSTUS	exon	2927782	2927901	.	+	.	transcript_id "Ledus.S2G038100.t1"; gene_id "Ledus.S2G038100"
Ledus.S2	AUGUSTUS	stop_codon	2927902	2927904	.	+	0	transcript_id "Ledus.S2G038100.t1"; gene_id "Ledus.S2G038100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3717.t1 is derived from g1153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11133987	11134812	.	-	.	Ledus.S1G113800
Ledus.S1	AUGUSTUS	transcript	11133987	11134812	.	-	.	transcript_id "Ledus.S1G113800.t1"; gene_id "Ledus.S1G113800"
Ledus.S1	AUGUSTUS	stop_codon	11133984	11133986	.	-	0	transcript_id "Ledus.S1G113800.t1"; gene_id "Ledus.S1G113800"
Ledus.S1	AUGUSTUS	CDS	11133987	11134121	0.99	-	0	transcript_id "Ledus.S1G113800.t1"; gene_id "Ledus.S1G113800"
Ledus.S1	AUGUSTUS	exon	11133987	11134121	.	-	.	transcript_id "Ledus.S1G113800.t1"; gene_id "Ledus.S1G113800"
Ledus.S1	AUGUSTUS	intron	11134122	11134415	.	-	.	transcript_id "Ledus.S1G113800.t1"; gene_id "Ledus.S1G113800"
Ledus.S1	AUGUSTUS	CDS	11134416	11134538	0.48	-	0	transcript_id "Ledus.S1G113800.t1"; gene_id "Ledus.S1G113800"
Ledus.S1	AUGUSTUS	exon	11134416	11134538	.	-	.	transcript_id "Ledus.S1G113800.t1"; gene_id "Ledus.S1G113800"
Ledus.S1	AUGUSTUS	intron	11134539	11134620	.	-	.	transcript_id "Ledus.S1G113800.t1"; gene_id "Ledus.S1G113800"
Ledus.S1	AUGUSTUS	CDS	11134621	11134812	0.87	-	0	transcript_id "Ledus.S1G113800.t1"; gene_id "Ledus.S1G113800"
Ledus.S1	AUGUSTUS	exon	11134621	11134812	.	-	.	transcript_id "Ledus.S1G113800.t1"; gene_id "Ledus.S1G113800"
Ledus.S1	AUGUSTUS	start_codon	11134810	11134812	.	-	0	transcript_id "Ledus.S1G113800.t1"; gene_id "Ledus.S1G113800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6749.t1 is derived from g4192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33730661	33733132	.	-	.	Ledus.S1G417000
Ledus.S1	AUGUSTUS	transcript	33730661	33733132	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	stop_codon	33730658	33730660	.	-	0	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33730661	33730862	1	-	1	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33730661	33730862	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33730863	33730943	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33730944	33731015	1	-	1	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33730944	33731015	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33731016	33731084	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33731085	33731162	1	-	1	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33731085	33731162	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33731163	33731256	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33731257	33731328	1	-	1	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33731257	33731328	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33731329	33731412	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33731413	33731484	1	-	1	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33731413	33731484	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33731485	33731579	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33731580	33731706	1	-	2	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33731580	33731706	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33731707	33731783	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33731784	33732277	0.96	-	1	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33731784	33732277	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33732278	33732380	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33732381	33732918	0.96	-	2	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33732381	33732918	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33732919	33733041	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33733042	33733132	0.96	-	0	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33733042	33733132	.	-	.	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	start_codon	33733130	33733132	.	-	0	transcript_id "Ledus.S1G417000.t1"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	transcript	33730661	33733132	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	stop_codon	33730658	33730660	.	-	0	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33730661	33730862	1	-	1	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33730661	33730862	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33730863	33730943	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33730944	33731015	1	-	1	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33730944	33731015	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33731016	33731084	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33731085	33731162	1	-	1	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33731085	33731162	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33731163	33731256	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33731257	33731328	1	-	1	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33731257	33731328	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33731329	33731412	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33731413	33731484	1	-	1	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33731413	33731484	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33731485	33731579	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33731580	33731692	0.96	-	0	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33731580	33731692	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33731693	33731783	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33731784	33731811	0.93	-	1	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33731784	33731811	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33731812	33731920	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33731921	33732277	0.75	-	1	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33731921	33732277	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33732278	33732380	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33732381	33732918	0.98	-	2	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33732381	33732918	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	intron	33732919	33733041	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	CDS	33733042	33733132	0.93	-	0	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	exon	33733042	33733132	.	-	.	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
Ledus.S1	AUGUSTUS	start_codon	33733130	33733132	.	-	0	transcript_id "Ledus.S1G417000.t2"; gene_id "Ledus.S1G417000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5094.t1 is derived from g2533.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21546229	21547022	.	-	.	Ledus.S1G251500
Ledus.S1	AUGUSTUS	transcript	21546229	21547022	.	-	.	transcript_id "Ledus.S1G251500.t1"; gene_id "Ledus.S1G251500"
Ledus.S1	AUGUSTUS	stop_codon	21546226	21546228	.	-	0	transcript_id "Ledus.S1G251500.t1"; gene_id "Ledus.S1G251500"
Ledus.S1	AUGUSTUS	CDS	21546229	21546789	0.43	-	0	transcript_id "Ledus.S1G251500.t1"; gene_id "Ledus.S1G251500"
Ledus.S1	AUGUSTUS	exon	21546229	21546789	.	-	.	transcript_id "Ledus.S1G251500.t1"; gene_id "Ledus.S1G251500"
Ledus.S1	AUGUSTUS	intron	21546790	21547010	.	-	.	transcript_id "Ledus.S1G251500.t1"; gene_id "Ledus.S1G251500"
Ledus.S1	AUGUSTUS	CDS	21547011	21547022	0.94	-	0	transcript_id "Ledus.S1G251500.t1"; gene_id "Ledus.S1G251500"
Ledus.S1	AUGUSTUS	exon	21547011	21547022	.	-	.	transcript_id "Ledus.S1G251500.t1"; gene_id "Ledus.S1G251500"
Ledus.S1	AUGUSTUS	start_codon	21547020	21547022	.	-	0	transcript_id "Ledus.S1G251500.t1"; gene_id "Ledus.S1G251500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2328.t1 is derived from g9191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17198125	17199871	.	+	.	Ledus.S2G221000
Ledus.S2	AUGUSTUS	transcript	17198125	17199871	.	+	.	transcript_id "Ledus.S2G221000.t1"; gene_id "Ledus.S2G221000"
Ledus.S2	AUGUSTUS	start_codon	17198125	17198127	.	+	0	transcript_id "Ledus.S2G221000.t1"; gene_id "Ledus.S2G221000"
Ledus.S2	AUGUSTUS	CDS	17198125	17198989	0.56	+	0	transcript_id "Ledus.S2G221000.t1"; gene_id "Ledus.S2G221000"
Ledus.S2	AUGUSTUS	exon	17198125	17198989	.	+	.	transcript_id "Ledus.S2G221000.t1"; gene_id "Ledus.S2G221000"
Ledus.S2	AUGUSTUS	intron	17198990	17199500	.	+	.	transcript_id "Ledus.S2G221000.t1"; gene_id "Ledus.S2G221000"
Ledus.S2	AUGUSTUS	CDS	17199501	17199871	0.92	+	2	transcript_id "Ledus.S2G221000.t1"; gene_id "Ledus.S2G221000"
Ledus.S2	AUGUSTUS	exon	17199501	17199871	.	+	.	transcript_id "Ledus.S2G221000.t1"; gene_id "Ledus.S2G221000"
Ledus.S2	AUGUSTUS	stop_codon	17199872	17199874	.	+	0	transcript_id "Ledus.S2G221000.t1"; gene_id "Ledus.S2G221000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12560.t1 is derived from g6182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12872675	12874857	.	-	.	Ledus.S4G171600
Ledus.S4	AUGUSTUS	transcript	12872675	12874857	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	stop_codon	12872672	12872674	.	-	0	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	CDS	12872675	12872926	0.71	-	0	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	exon	12872675	12872926	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	intron	12872927	12873019	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	CDS	12873020	12873282	1	-	2	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	exon	12873020	12873282	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	intron	12873283	12873383	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	CDS	12873384	12873484	0.69	-	1	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	exon	12873384	12873484	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	intron	12873485	12873623	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	CDS	12873624	12873835	0.88	-	0	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	exon	12873624	12873835	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	intron	12873836	12873964	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	CDS	12873965	12874121	1	-	1	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	exon	12873965	12874121	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	intron	12874122	12874197	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	CDS	12874198	12874331	1	-	0	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	exon	12874198	12874331	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	intron	12874332	12874424	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	CDS	12874425	12874538	1	-	0	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	exon	12874425	12874538	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	intron	12874539	12874644	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	CDS	12874645	12874857	0.95	-	0	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	exon	12874645	12874857	.	-	.	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
Ledus.S4	AUGUSTUS	start_codon	12874855	12874857	.	-	0	transcript_id "Ledus.S4G171600.t1"; gene_id "Ledus.S4G171600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8986.t1 is derived from g10016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3687223	3687546	.	-	.	Ledus.S3G046300
Ledus.S3	AUGUSTUS	transcript	3687223	3687546	.	-	.	transcript_id "Ledus.S3G046300.t1"; gene_id "Ledus.S3G046300"
Ledus.S3	AUGUSTUS	stop_codon	3687220	3687222	.	-	0	transcript_id "Ledus.S3G046300.t1"; gene_id "Ledus.S3G046300"
Ledus.S3	AUGUSTUS	CDS	3687223	3687546	0.51	-	0	transcript_id "Ledus.S3G046300.t1"; gene_id "Ledus.S3G046300"
Ledus.S3	AUGUSTUS	exon	3687223	3687546	.	-	.	transcript_id "Ledus.S3G046300.t1"; gene_id "Ledus.S3G046300"
Ledus.S3	AUGUSTUS	start_codon	3687544	3687546	.	-	0	transcript_id "Ledus.S3G046300.t1"; gene_id "Ledus.S3G046300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg497.t1 is derived from g7358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2921232	2924720	.	+	.	Ledus.S2G037900
Ledus.S2	AUGUSTUS	transcript	2921232	2924720	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	start_codon	2921232	2921234	.	+	0	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	CDS	2921232	2922474	0.79	+	0	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	exon	2921232	2922474	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	intron	2922475	2922552	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	CDS	2922553	2923123	0.95	+	2	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	exon	2922553	2923123	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	intron	2923124	2923200	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	CDS	2923201	2923494	0.75	+	1	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	exon	2923201	2923494	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	intron	2923495	2923574	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	CDS	2923575	2923698	1	+	1	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	exon	2923575	2923698	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	intron	2923699	2923776	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	CDS	2923777	2924070	1	+	0	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	exon	2923777	2924070	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	intron	2924071	2924156	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	CDS	2924157	2924359	1	+	0	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	exon	2924157	2924359	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	intron	2924360	2924467	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	CDS	2924468	2924720	0.99	+	1	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	exon	2924468	2924720	.	+	.	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
Ledus.S2	AUGUSTUS	stop_codon	2924721	2924723	.	+	0	transcript_id "Ledus.S2G037900.t1"; gene_id "Ledus.S2G037900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2875.t1 is derived from g310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4344495	4345832	.	+	.	Ledus.S1G029600
Ledus.S1	AUGUSTUS	transcript	4344495	4345832	.	+	.	transcript_id "Ledus.S1G029600.t1"; gene_id "Ledus.S1G029600"
Ledus.S1	AUGUSTUS	start_codon	4344495	4344497	.	+	0	transcript_id "Ledus.S1G029600.t1"; gene_id "Ledus.S1G029600"
Ledus.S1	AUGUSTUS	CDS	4344495	4345832	0.71	+	0	transcript_id "Ledus.S1G029600.t1"; gene_id "Ledus.S1G029600"
Ledus.S1	AUGUSTUS	exon	4344495	4345832	.	+	.	transcript_id "Ledus.S1G029600.t1"; gene_id "Ledus.S1G029600"
Ledus.S1	AUGUSTUS	stop_codon	4345833	4345835	.	+	0	transcript_id "Ledus.S1G029600.t1"; gene_id "Ledus.S1G029600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4802.t1 is derived from g2240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19837894	19838961	.	-	.	Ledus.S1G222300
Ledus.S1	AUGUSTUS	transcript	19837894	19838961	.	-	.	transcript_id "Ledus.S1G222300.t1"; gene_id "Ledus.S1G222300"
Ledus.S1	AUGUSTUS	stop_codon	19837891	19837893	.	-	0	transcript_id "Ledus.S1G222300.t1"; gene_id "Ledus.S1G222300"
Ledus.S1	AUGUSTUS	CDS	19837894	19838961	0.55	-	0	transcript_id "Ledus.S1G222300.t1"; gene_id "Ledus.S1G222300"
Ledus.S1	AUGUSTUS	exon	19837894	19838961	.	-	.	transcript_id "Ledus.S1G222300.t1"; gene_id "Ledus.S1G222300"
Ledus.S1	AUGUSTUS	start_codon	19838959	19838961	.	-	0	transcript_id "Ledus.S1G222300.t1"; gene_id "Ledus.S1G222300"
# This transcript jg8655.t2 is derived from g9685.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8656.t1 is derived from g9686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1166195	1169007	.	-	.	Ledus.S3G013300
Ledus.S3	AUGUSTUS	transcript	1166195	1169007	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	stop_codon	1166192	1166194	.	-	0	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	CDS	1166195	1166254	0.96	-	0	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	exon	1166195	1166254	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	intron	1166255	1166386	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	CDS	1166387	1166557	1	-	0	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	exon	1166387	1166557	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	intron	1166558	1166643	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	CDS	1166644	1166854	1	-	1	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	exon	1166644	1166854	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	intron	1166855	1166938	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	CDS	1166939	1166991	1	-	0	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	exon	1166939	1166991	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	intron	1166992	1167107	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	CDS	1167108	1167158	1	-	0	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	exon	1167108	1167158	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	intron	1167159	1167344	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	CDS	1167345	1167411	1	-	1	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	exon	1167345	1167411	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	intron	1167412	1167514	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	CDS	1167515	1167636	1	-	0	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	exon	1167515	1167636	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	intron	1167637	1167733	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	CDS	1167734	1167932	0.99	-	1	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	exon	1167734	1167932	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	intron	1167933	1168059	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	CDS	1168060	1168142	1	-	0	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	exon	1168060	1168142	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	intron	1168143	1168361	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	CDS	1168362	1168556	1	-	0	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	exon	1168362	1168556	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	intron	1168557	1168697	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	CDS	1168698	1168853	1	-	0	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	exon	1168698	1168853	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	intron	1168854	1168992	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	CDS	1168993	1169007	0.57	-	0	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	exon	1168993	1169007	.	-	.	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
Ledus.S3	AUGUSTUS	start_codon	1169005	1169007	.	-	0	transcript_id "Ledus.S3G013300.t1"; gene_id "Ledus.S3G013300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13130.t1 is derived from g6940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6611385	6611777	.	+	.	Ledus.S6G019200
Ledus.S6	AUGUSTUS	transcript	6611385	6611777	.	+	.	transcript_id "Ledus.S6G019200.t1"; gene_id "Ledus.S6G019200"
Ledus.S6	AUGUSTUS	start_codon	6611385	6611387	.	+	0	transcript_id "Ledus.S6G019200.t1"; gene_id "Ledus.S6G019200"
Ledus.S6	AUGUSTUS	CDS	6611385	6611777	0.46	+	0	transcript_id "Ledus.S6G019200.t1"; gene_id "Ledus.S6G019200"
Ledus.S6	AUGUSTUS	exon	6611385	6611777	.	+	.	transcript_id "Ledus.S6G019200.t1"; gene_id "Ledus.S6G019200"
Ledus.S6	AUGUSTUS	stop_codon	6611778	6611780	.	+	0	transcript_id "Ledus.S6G019200.t1"; gene_id "Ledus.S6G019200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10162.t1 is derived from g11192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13408034	13408849	.	-	.	Ledus.S3G163900
Ledus.S3	AUGUSTUS	transcript	13408462	13408849	.	-	.	transcript_id "Ledus.S3G163900.t1"; gene_id "Ledus.S3G163900"
Ledus.S3	AUGUSTUS	stop_codon	13408459	13408461	.	-	0	transcript_id "Ledus.S3G163900.t1"; gene_id "Ledus.S3G163900"
Ledus.S3	AUGUSTUS	CDS	13408462	13408504	0.96	-	1	transcript_id "Ledus.S3G163900.t1"; gene_id "Ledus.S3G163900"
Ledus.S3	AUGUSTUS	exon	13408462	13408504	.	-	.	transcript_id "Ledus.S3G163900.t1"; gene_id "Ledus.S3G163900"
Ledus.S3	AUGUSTUS	intron	13408505	13408580	.	-	.	transcript_id "Ledus.S3G163900.t1"; gene_id "Ledus.S3G163900"
Ledus.S3	AUGUSTUS	CDS	13408581	13408849	0.88	-	0	transcript_id "Ledus.S3G163900.t1"; gene_id "Ledus.S3G163900"
Ledus.S3	AUGUSTUS	exon	13408581	13408849	.	-	.	transcript_id "Ledus.S3G163900.t1"; gene_id "Ledus.S3G163900"
Ledus.S3	AUGUSTUS	start_codon	13408847	13408849	.	-	0	transcript_id "Ledus.S3G163900.t1"; gene_id "Ledus.S3G163900"
Ledus.S3	AUGUSTUS	transcript	13408034	13408849	.	-	.	transcript_id "Ledus.S3G163900.t2"; gene_id "Ledus.S3G163900"
Ledus.S3	AUGUSTUS	stop_codon	13408031	13408033	.	-	0	transcript_id "Ledus.S3G163900.t2"; gene_id "Ledus.S3G163900"
Ledus.S3	AUGUSTUS	CDS	13408034	13408849	0.7	-	0	transcript_id "Ledus.S3G163900.t2"; gene_id "Ledus.S3G163900"
Ledus.S3	AUGUSTUS	exon	13408034	13408849	.	-	.	transcript_id "Ledus.S3G163900.t2"; gene_id "Ledus.S3G163900"
Ledus.S3	AUGUSTUS	start_codon	13408847	13408849	.	-	0	transcript_id "Ledus.S3G163900.t2"; gene_id "Ledus.S3G163900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6922.t1 is derived from g4366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35439905	35442616	.	+	.	Ledus.S1G434300
Ledus.S1	AUGUSTUS	transcript	35439905	35442616	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	start_codon	35439905	35439907	.	+	0	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35439905	35439919	0.92	+	0	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35439905	35439919	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	intron	35439920	35440103	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35440104	35440238	1	+	0	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35440104	35440238	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	intron	35440239	35440337	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35440338	35440358	1	+	0	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35440338	35440358	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	intron	35440359	35440474	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35440475	35440548	1	+	0	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35440475	35440548	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	intron	35440549	35440642	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35440643	35440733	1	+	1	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35440643	35440733	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	intron	35440734	35440833	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35440834	35440917	1	+	0	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35440834	35440917	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	intron	35440918	35440996	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35440997	35441098	1	+	0	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35440997	35441098	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	intron	35441099	35441316	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35441317	35441448	1	+	0	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35441317	35441448	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	intron	35441449	35441675	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35441676	35441747	1	+	0	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35441676	35441747	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	intron	35441748	35441953	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35441954	35442060	1	+	0	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35441954	35442060	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	intron	35442061	35442291	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35442292	35442371	0.77	+	1	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35442292	35442371	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	intron	35442372	35442469	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35442470	35442514	0.82	+	2	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35442470	35442514	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	intron	35442515	35442614	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	CDS	35442615	35442616	1	+	2	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	exon	35442615	35442616	.	+	.	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
Ledus.S1	AUGUSTUS	stop_codon	35442617	35442619	.	+	0	transcript_id "Ledus.S1G434300.t1"; gene_id "Ledus.S1G434300"
# This transcript jg3749.t2 is derived from g1185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3750.t1 is derived from g1186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11563742	11564433	.	-	.	Ledus.S1G117100
Ledus.S1	AUGUSTUS	transcript	11563742	11564433	.	-	.	transcript_id "Ledus.S1G117100.t1"; gene_id "Ledus.S1G117100"
Ledus.S1	AUGUSTUS	stop_codon	11563739	11563741	.	-	0	transcript_id "Ledus.S1G117100.t1"; gene_id "Ledus.S1G117100"
Ledus.S1	AUGUSTUS	CDS	11563742	11563850	0.04	-	1	transcript_id "Ledus.S1G117100.t1"; gene_id "Ledus.S1G117100"
Ledus.S1	AUGUSTUS	exon	11563742	11563850	.	-	.	transcript_id "Ledus.S1G117100.t1"; gene_id "Ledus.S1G117100"
Ledus.S1	AUGUSTUS	intron	11563851	11564100	.	-	.	transcript_id "Ledus.S1G117100.t1"; gene_id "Ledus.S1G117100"
Ledus.S1	AUGUSTUS	CDS	11564101	11564119	0.04	-	2	transcript_id "Ledus.S1G117100.t1"; gene_id "Ledus.S1G117100"
Ledus.S1	AUGUSTUS	exon	11564101	11564119	.	-	.	transcript_id "Ledus.S1G117100.t1"; gene_id "Ledus.S1G117100"
Ledus.S1	AUGUSTUS	intron	11564120	11564393	.	-	.	transcript_id "Ledus.S1G117100.t1"; gene_id "Ledus.S1G117100"
Ledus.S1	AUGUSTUS	CDS	11564394	11564433	0.02	-	0	transcript_id "Ledus.S1G117100.t1"; gene_id "Ledus.S1G117100"
Ledus.S1	AUGUSTUS	exon	11564394	11564433	.	-	.	transcript_id "Ledus.S1G117100.t1"; gene_id "Ledus.S1G117100"
Ledus.S1	AUGUSTUS	start_codon	11564431	11564433	.	-	0	transcript_id "Ledus.S1G117100.t1"; gene_id "Ledus.S1G117100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12747.t1 is derived from g6369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14191334	14192728	.	+	.	Ledus.S4G190300
Ledus.S4	AUGUSTUS	transcript	14191334	14192728	.	+	.	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	start_codon	14191334	14191336	.	+	0	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	CDS	14191334	14191582	0.88	+	0	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	exon	14191334	14191582	.	+	.	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	intron	14191583	14191662	.	+	.	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	CDS	14191663	14191862	1	+	0	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	exon	14191663	14191862	.	+	.	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	intron	14191863	14191959	.	+	.	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	CDS	14191960	14192040	1	+	1	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	exon	14191960	14192040	.	+	.	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	intron	14192041	14192124	.	+	.	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	CDS	14192125	14192250	1	+	1	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	exon	14192125	14192250	.	+	.	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	intron	14192251	14192316	.	+	.	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	CDS	14192317	14192440	1	+	1	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	exon	14192317	14192440	.	+	.	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	intron	14192441	14192530	.	+	.	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	CDS	14192531	14192728	1	+	0	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	exon	14192531	14192728	.	+	.	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
Ledus.S4	AUGUSTUS	stop_codon	14192729	14192731	.	+	0	transcript_id "Ledus.S4G190300.t1"; gene_id "Ledus.S4G190300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10297.t1 is derived from g11327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14119328	14123320	.	+	.	Ledus.S3G177400
Ledus.S3	AUGUSTUS	transcript	14119328	14123320	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	start_codon	14119328	14119330	.	+	0	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14119328	14119637	1	+	0	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14119328	14119637	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	intron	14119638	14119726	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14119727	14119779	0.54	+	2	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14119727	14119779	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	intron	14119780	14119996	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14119997	14120174	0.79	+	0	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14119997	14120174	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	intron	14120175	14120286	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14120287	14120462	0.84	+	2	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14120287	14120462	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	intron	14120463	14120903	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14120904	14121071	1	+	0	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14120904	14121071	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	intron	14121072	14121215	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14121216	14121377	1	+	0	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14121216	14121377	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	intron	14121378	14121476	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14121477	14121538	1	+	0	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14121477	14121538	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	intron	14121539	14121917	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14121918	14122053	1	+	1	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14121918	14122053	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	intron	14122054	14122236	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14122237	14122331	1	+	0	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14122237	14122331	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	intron	14122332	14122424	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14122425	14122540	1	+	1	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14122425	14122540	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	intron	14122541	14122798	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14122799	14122928	1	+	2	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14122799	14122928	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	intron	14122929	14123013	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14123014	14123068	1	+	1	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14123014	14123068	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	intron	14123069	14123158	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	CDS	14123159	14123320	0.99	+	0	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	exon	14123159	14123320	.	+	.	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
Ledus.S3	AUGUSTUS	stop_codon	14123321	14123323	.	+	0	transcript_id "Ledus.S3G177400.t1"; gene_id "Ledus.S3G177400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11164.t1 is derived from g4782.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2274075	2274359	.	+	.	Ledus.S4G032000
Ledus.S4	AUGUSTUS	transcript	2274075	2274359	.	+	.	transcript_id "Ledus.S4G032000.t1"; gene_id "Ledus.S4G032000"
Ledus.S4	AUGUSTUS	start_codon	2274075	2274077	.	+	0	transcript_id "Ledus.S4G032000.t1"; gene_id "Ledus.S4G032000"
Ledus.S4	AUGUSTUS	CDS	2274075	2274359	0.97	+	0	transcript_id "Ledus.S4G032000.t1"; gene_id "Ledus.S4G032000"
Ledus.S4	AUGUSTUS	exon	2274075	2274359	.	+	.	transcript_id "Ledus.S4G032000.t1"; gene_id "Ledus.S4G032000"
Ledus.S4	AUGUSTUS	stop_codon	2274360	2274362	.	+	0	transcript_id "Ledus.S4G032000.t1"; gene_id "Ledus.S4G032000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1997.t1 is derived from g8860.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14115212	14117939	.	+	.	Ledus.S2G187900
Ledus.S2	AUGUSTUS	transcript	14115212	14117939	.	+	.	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	start_codon	14115212	14115214	.	+	0	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	CDS	14115212	14115442	1	+	0	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	exon	14115212	14115442	.	+	.	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	intron	14115443	14115650	.	+	.	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	CDS	14115651	14115804	1	+	0	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	exon	14115651	14115804	.	+	.	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	intron	14115805	14115881	.	+	.	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	CDS	14115882	14115940	1	+	2	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	exon	14115882	14115940	.	+	.	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	intron	14115941	14116026	.	+	.	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	CDS	14116027	14116299	0.9	+	0	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	exon	14116027	14116299	.	+	.	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	intron	14116300	14116397	.	+	.	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	CDS	14116398	14116414	0.86	+	0	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	exon	14116398	14116414	.	+	.	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	intron	14116415	14116504	.	+	.	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	CDS	14116505	14117939	1	+	1	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	exon	14116505	14117939	.	+	.	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	stop_codon	14117940	14117942	.	+	0	transcript_id "Ledus.S2G187900.t1"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	transcript	14115212	14117939	.	+	.	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	start_codon	14115212	14115214	.	+	0	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	CDS	14115212	14115442	1	+	0	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	exon	14115212	14115442	.	+	.	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	intron	14115443	14115650	.	+	.	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	CDS	14115651	14115804	1	+	0	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	exon	14115651	14115804	.	+	.	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	intron	14115805	14115881	.	+	.	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	CDS	14115882	14115940	1	+	2	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	exon	14115882	14115940	.	+	.	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	intron	14115941	14116026	.	+	.	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	CDS	14116027	14116166	0.6	+	0	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	exon	14116027	14116166	.	+	.	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	intron	14116167	14116397	.	+	.	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	CDS	14116398	14116430	0.29	+	1	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	exon	14116398	14116430	.	+	.	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	intron	14116431	14116504	.	+	.	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	CDS	14116505	14117939	0.98	+	1	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	exon	14116505	14117939	.	+	.	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
Ledus.S2	AUGUSTUS	stop_codon	14117940	14117942	.	+	0	transcript_id "Ledus.S2G187900.t2"; gene_id "Ledus.S2G187900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13015.t1 is derived from g6825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2978008	2978307	.	-	.	Ledus.S6G007700
Ledus.S6	AUGUSTUS	transcript	2978008	2978307	.	-	.	transcript_id "Ledus.S6G007700.t1"; gene_id "Ledus.S6G007700"
Ledus.S6	AUGUSTUS	stop_codon	2978005	2978007	.	-	0	transcript_id "Ledus.S6G007700.t1"; gene_id "Ledus.S6G007700"
Ledus.S6	AUGUSTUS	CDS	2978008	2978307	1	-	0	transcript_id "Ledus.S6G007700.t1"; gene_id "Ledus.S6G007700"
Ledus.S6	AUGUSTUS	exon	2978008	2978307	.	-	.	transcript_id "Ledus.S6G007700.t1"; gene_id "Ledus.S6G007700"
Ledus.S6	AUGUSTUS	start_codon	2978305	2978307	.	-	0	transcript_id "Ledus.S6G007700.t1"; gene_id "Ledus.S6G007700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg467.t1 is derived from g7328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2734764	2738023	.	-	.	Ledus.S2G034900
Ledus.S2	AUGUSTUS	transcript	2734764	2738023	.	-	.	transcript_id "Ledus.S2G034900.t1"; gene_id "Ledus.S2G034900"
Ledus.S2	AUGUSTUS	stop_codon	2734761	2734763	.	-	0	transcript_id "Ledus.S2G034900.t1"; gene_id "Ledus.S2G034900"
Ledus.S2	AUGUSTUS	CDS	2734764	2737515	0.97	-	1	transcript_id "Ledus.S2G034900.t1"; gene_id "Ledus.S2G034900"
Ledus.S2	AUGUSTUS	exon	2734764	2737515	.	-	.	transcript_id "Ledus.S2G034900.t1"; gene_id "Ledus.S2G034900"
Ledus.S2	AUGUSTUS	intron	2737516	2737964	.	-	.	transcript_id "Ledus.S2G034900.t1"; gene_id "Ledus.S2G034900"
Ledus.S2	AUGUSTUS	CDS	2737965	2738023	0.95	-	0	transcript_id "Ledus.S2G034900.t1"; gene_id "Ledus.S2G034900"
Ledus.S2	AUGUSTUS	exon	2737965	2738023	.	-	.	transcript_id "Ledus.S2G034900.t1"; gene_id "Ledus.S2G034900"
Ledus.S2	AUGUSTUS	start_codon	2738021	2738023	.	-	0	transcript_id "Ledus.S2G034900.t1"; gene_id "Ledus.S2G034900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg98.t1 is derived from g9511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	406476	407729	.	+	.	Ledus.C8G005800
Ledus.C8	AUGUSTUS	transcript	406476	407729	.	+	.	transcript_id "Ledus.C8G005800.t1"; gene_id "Ledus.C8G005800"
Ledus.C8	AUGUSTUS	start_codon	406476	406478	.	+	0	transcript_id "Ledus.C8G005800.t1"; gene_id "Ledus.C8G005800"
Ledus.C8	AUGUSTUS	CDS	406476	407729	1	+	0	transcript_id "Ledus.C8G005800.t1"; gene_id "Ledus.C8G005800"
Ledus.C8	AUGUSTUS	exon	406476	407729	.	+	.	transcript_id "Ledus.C8G005800.t1"; gene_id "Ledus.C8G005800"
Ledus.C8	AUGUSTUS	stop_codon	407730	407732	.	+	0	transcript_id "Ledus.C8G005800.t1"; gene_id "Ledus.C8G005800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10066.t1 is derived from g11096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12473154	12474728	.	-	.	Ledus.S3G154300
Ledus.S3	AUGUSTUS	transcript	12473154	12474728	.	-	.	transcript_id "Ledus.S3G154300.t1"; gene_id "Ledus.S3G154300"
Ledus.S3	AUGUSTUS	stop_codon	12473151	12473153	.	-	0	transcript_id "Ledus.S3G154300.t1"; gene_id "Ledus.S3G154300"
Ledus.S3	AUGUSTUS	CDS	12473154	12473756	0.63	-	0	transcript_id "Ledus.S3G154300.t1"; gene_id "Ledus.S3G154300"
Ledus.S3	AUGUSTUS	exon	12473154	12473756	.	-	.	transcript_id "Ledus.S3G154300.t1"; gene_id "Ledus.S3G154300"
Ledus.S3	AUGUSTUS	intron	12473757	12474044	.	-	.	transcript_id "Ledus.S3G154300.t1"; gene_id "Ledus.S3G154300"
Ledus.S3	AUGUSTUS	CDS	12474045	12474271	0.34	-	2	transcript_id "Ledus.S3G154300.t1"; gene_id "Ledus.S3G154300"
Ledus.S3	AUGUSTUS	exon	12474045	12474271	.	-	.	transcript_id "Ledus.S3G154300.t1"; gene_id "Ledus.S3G154300"
Ledus.S3	AUGUSTUS	intron	12474272	12474538	.	-	.	transcript_id "Ledus.S3G154300.t1"; gene_id "Ledus.S3G154300"
Ledus.S3	AUGUSTUS	CDS	12474539	12474728	0.61	-	0	transcript_id "Ledus.S3G154300.t1"; gene_id "Ledus.S3G154300"
Ledus.S3	AUGUSTUS	exon	12474539	12474728	.	-	.	transcript_id "Ledus.S3G154300.t1"; gene_id "Ledus.S3G154300"
Ledus.S3	AUGUSTUS	start_codon	12474726	12474728	.	-	0	transcript_id "Ledus.S3G154300.t1"; gene_id "Ledus.S3G154300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7114.t1 is derived from g6645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1649567	1650102	.	+	.	Ledus.C7G017500
Ledus.C7	AUGUSTUS	transcript	1649567	1650102	.	+	.	transcript_id "Ledus.C7G017500.t1"; gene_id "Ledus.C7G017500"
Ledus.C7	AUGUSTUS	start_codon	1649567	1649569	.	+	0	transcript_id "Ledus.C7G017500.t1"; gene_id "Ledus.C7G017500"
Ledus.C7	AUGUSTUS	CDS	1649567	1649612	0.64	+	0	transcript_id "Ledus.C7G017500.t1"; gene_id "Ledus.C7G017500"
Ledus.C7	AUGUSTUS	exon	1649567	1649612	.	+	.	transcript_id "Ledus.C7G017500.t1"; gene_id "Ledus.C7G017500"
Ledus.C7	AUGUSTUS	intron	1649613	1649758	.	+	.	transcript_id "Ledus.C7G017500.t1"; gene_id "Ledus.C7G017500"
Ledus.C7	AUGUSTUS	CDS	1649759	1650102	0.69	+	2	transcript_id "Ledus.C7G017500.t1"; gene_id "Ledus.C7G017500"
Ledus.C7	AUGUSTUS	exon	1649759	1650102	.	+	.	transcript_id "Ledus.C7G017500.t1"; gene_id "Ledus.C7G017500"
Ledus.C7	AUGUSTUS	stop_codon	1650103	1650105	.	+	0	transcript_id "Ledus.C7G017500.t1"; gene_id "Ledus.C7G017500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7989.t1 is derived from g12660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8362930	8365742	.	+	.	Ledus.S5G076700
Ledus.S5	AUGUSTUS	transcript	8362930	8365742	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	start_codon	8362930	8362932	.	+	0	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	CDS	8362930	8362972	0.29	+	0	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	exon	8362930	8362972	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	intron	8362973	8363060	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	CDS	8363061	8363146	1	+	2	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	exon	8363061	8363146	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	intron	8363147	8363292	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	CDS	8363293	8363390	1	+	0	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	exon	8363293	8363390	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	intron	8363391	8363489	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	CDS	8363490	8363607	1	+	1	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	exon	8363490	8363607	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	intron	8363608	8363706	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	CDS	8363707	8363796	1	+	0	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	exon	8363707	8363796	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	intron	8363797	8363886	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	CDS	8363887	8364191	0.99	+	0	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	exon	8363887	8364191	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	intron	8364192	8364370	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	CDS	8364371	8364566	1	+	1	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	exon	8364371	8364566	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	intron	8364567	8364705	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	CDS	8364706	8364891	1	+	0	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	exon	8364706	8364891	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	intron	8364892	8364986	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	CDS	8364987	8365256	1	+	0	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	exon	8364987	8365256	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	intron	8365257	8365427	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	CDS	8365428	8365742	0.97	+	0	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	exon	8365428	8365742	.	+	.	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
Ledus.S5	AUGUSTUS	stop_codon	8365743	8365745	.	+	0	transcript_id "Ledus.S5G076700.t1"; gene_id "Ledus.S5G076700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9048.t1 is derived from g10078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4157458	4157765	.	+	.	Ledus.S3G052500
Ledus.S3	AUGUSTUS	transcript	4157458	4157765	.	+	.	transcript_id "Ledus.S3G052500.t1"; gene_id "Ledus.S3G052500"
Ledus.S3	AUGUSTUS	start_codon	4157458	4157460	.	+	0	transcript_id "Ledus.S3G052500.t1"; gene_id "Ledus.S3G052500"
Ledus.S3	AUGUSTUS	CDS	4157458	4157625	0.72	+	0	transcript_id "Ledus.S3G052500.t1"; gene_id "Ledus.S3G052500"
Ledus.S3	AUGUSTUS	exon	4157458	4157625	.	+	.	transcript_id "Ledus.S3G052500.t1"; gene_id "Ledus.S3G052500"
Ledus.S3	AUGUSTUS	intron	4157626	4157711	.	+	.	transcript_id "Ledus.S3G052500.t1"; gene_id "Ledus.S3G052500"
Ledus.S3	AUGUSTUS	CDS	4157712	4157765	0.65	+	0	transcript_id "Ledus.S3G052500.t1"; gene_id "Ledus.S3G052500"
Ledus.S3	AUGUSTUS	exon	4157712	4157765	.	+	.	transcript_id "Ledus.S3G052500.t1"; gene_id "Ledus.S3G052500"
Ledus.S3	AUGUSTUS	stop_codon	4157766	4157768	.	+	0	transcript_id "Ledus.S3G052500.t1"; gene_id "Ledus.S3G052500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4184.t1 is derived from g1620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15239277	15239886	.	+	.	Ledus.S1G160500
Ledus.S1	AUGUSTUS	transcript	15239277	15239886	.	+	.	transcript_id "Ledus.S1G160500.t1"; gene_id "Ledus.S1G160500"
Ledus.S1	AUGUSTUS	start_codon	15239277	15239279	.	+	0	transcript_id "Ledus.S1G160500.t1"; gene_id "Ledus.S1G160500"
Ledus.S1	AUGUSTUS	CDS	15239277	15239636	0.57	+	0	transcript_id "Ledus.S1G160500.t1"; gene_id "Ledus.S1G160500"
Ledus.S1	AUGUSTUS	exon	15239277	15239636	.	+	.	transcript_id "Ledus.S1G160500.t1"; gene_id "Ledus.S1G160500"
Ledus.S1	AUGUSTUS	intron	15239637	15239736	.	+	.	transcript_id "Ledus.S1G160500.t1"; gene_id "Ledus.S1G160500"
Ledus.S1	AUGUSTUS	CDS	15239737	15239886	0.66	+	0	transcript_id "Ledus.S1G160500.t1"; gene_id "Ledus.S1G160500"
Ledus.S1	AUGUSTUS	exon	15239737	15239886	.	+	.	transcript_id "Ledus.S1G160500.t1"; gene_id "Ledus.S1G160500"
Ledus.S1	AUGUSTUS	stop_codon	15239887	15239889	.	+	0	transcript_id "Ledus.S1G160500.t1"; gene_id "Ledus.S1G160500"
# This transcript jg6200.t2 is derived from g3643.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6201.t1 is derived from g3644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29603230	29605546	.	-	.	Ledus.S1G362200
Ledus.S1	AUGUSTUS	transcript	29603230	29605546	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	stop_codon	29603227	29603229	.	-	0	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	CDS	29603230	29603295	0.36	-	0	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	exon	29603230	29603295	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	intron	29603296	29603394	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	CDS	29603395	29603454	1	-	0	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	exon	29603395	29603454	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	intron	29603455	29603534	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	CDS	29603535	29603605	1	-	2	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	exon	29603535	29603605	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	intron	29603606	29603693	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	CDS	29603694	29603721	1	-	0	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	exon	29603694	29603721	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	intron	29603722	29603825	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	CDS	29603826	29603972	1	-	0	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	exon	29603826	29603972	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	intron	29603973	29604060	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	CDS	29604061	29604315	1	-	0	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	exon	29604061	29604315	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	intron	29604316	29604403	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	CDS	29604404	29604466	1	-	0	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	exon	29604404	29604466	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	intron	29604467	29604552	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	CDS	29604553	29604663	1	-	0	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	exon	29604553	29604663	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	intron	29604664	29604798	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	CDS	29604799	29604852	1	-	0	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	exon	29604799	29604852	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	intron	29604853	29604941	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	CDS	29604942	29605130	1	-	0	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	exon	29604942	29605130	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	intron	29605131	29605210	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	CDS	29605211	29605546	0.91	-	0	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	exon	29605211	29605546	.	-	.	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
Ledus.S1	AUGUSTUS	start_codon	29605544	29605546	.	-	0	transcript_id "Ledus.S1G362200.t1"; gene_id "Ledus.S1G362200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1154.t1 is derived from g8015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7968597	7968950	.	-	.	Ledus.S2G103600
Ledus.S2	AUGUSTUS	transcript	7968597	7968950	.	-	.	transcript_id "Ledus.S2G103600.t1"; gene_id "Ledus.S2G103600"
Ledus.S2	AUGUSTUS	stop_codon	7968594	7968596	.	-	0	transcript_id "Ledus.S2G103600.t1"; gene_id "Ledus.S2G103600"
Ledus.S2	AUGUSTUS	CDS	7968597	7968723	0.73	-	1	transcript_id "Ledus.S2G103600.t1"; gene_id "Ledus.S2G103600"
Ledus.S2	AUGUSTUS	exon	7968597	7968723	.	-	.	transcript_id "Ledus.S2G103600.t1"; gene_id "Ledus.S2G103600"
Ledus.S2	AUGUSTUS	intron	7968724	7968861	.	-	.	transcript_id "Ledus.S2G103600.t1"; gene_id "Ledus.S2G103600"
Ledus.S2	AUGUSTUS	CDS	7968862	7968950	0.88	-	0	transcript_id "Ledus.S2G103600.t1"; gene_id "Ledus.S2G103600"
Ledus.S2	AUGUSTUS	exon	7968862	7968950	.	-	.	transcript_id "Ledus.S2G103600.t1"; gene_id "Ledus.S2G103600"
Ledus.S2	AUGUSTUS	start_codon	7968948	7968950	.	-	0	transcript_id "Ledus.S2G103600.t1"; gene_id "Ledus.S2G103600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8045.t1 is derived from g12716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8777857	8780267	.	-	.	Ledus.S5G082300
Ledus.S5	AUGUSTUS	transcript	8777857	8780267	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	stop_codon	8777854	8777856	.	-	0	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	CDS	8777857	8777929	1	-	1	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	exon	8777857	8777929	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	intron	8777930	8778017	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	CDS	8778018	8778074	1	-	1	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	exon	8778018	8778074	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	intron	8778075	8778167	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	CDS	8778168	8778310	1	-	0	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	exon	8778168	8778310	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	intron	8778311	8778400	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	CDS	8778401	8778452	1	-	1	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	exon	8778401	8778452	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	intron	8778453	8778608	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	CDS	8778609	8779546	0.39	-	0	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	exon	8778609	8779546	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	intron	8779547	8779657	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	CDS	8779658	8779734	0.78	-	2	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	exon	8779658	8779734	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	intron	8779735	8779851	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	CDS	8779852	8779931	0.81	-	1	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	exon	8779852	8779931	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	intron	8779932	8780127	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	CDS	8780128	8780267	0.4	-	0	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	exon	8780128	8780267	.	-	.	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
Ledus.S5	AUGUSTUS	start_codon	8780265	8780267	.	-	0	transcript_id "Ledus.S5G082300.t1"; gene_id "Ledus.S5G082300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13023.t1 is derived from g6833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3307672	3307926	.	-	.	Ledus.S6G008500
Ledus.S6	AUGUSTUS	transcript	3307672	3307926	.	-	.	transcript_id "Ledus.S6G008500.t1"; gene_id "Ledus.S6G008500"
Ledus.S6	AUGUSTUS	stop_codon	3307669	3307671	.	-	0	transcript_id "Ledus.S6G008500.t1"; gene_id "Ledus.S6G008500"
Ledus.S6	AUGUSTUS	CDS	3307672	3307926	0.99	-	0	transcript_id "Ledus.S6G008500.t1"; gene_id "Ledus.S6G008500"
Ledus.S6	AUGUSTUS	exon	3307672	3307926	.	-	.	transcript_id "Ledus.S6G008500.t1"; gene_id "Ledus.S6G008500"
Ledus.S6	AUGUSTUS	start_codon	3307924	3307926	.	-	0	transcript_id "Ledus.S6G008500.t1"; gene_id "Ledus.S6G008500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11456.t1 is derived from g5074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4403120	4405204	.	+	.	Ledus.S4G061200
Ledus.S4	AUGUSTUS	transcript	4403120	4405204	.	+	.	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	start_codon	4403120	4403122	.	+	0	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	CDS	4403120	4403264	0.98	+	0	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	exon	4403120	4403264	.	+	.	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	intron	4403265	4403348	.	+	.	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	CDS	4403349	4403566	1	+	2	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	exon	4403349	4403566	.	+	.	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	intron	4403567	4403705	.	+	.	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	CDS	4403706	4404274	1	+	0	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	exon	4403706	4404274	.	+	.	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	intron	4404275	4404360	.	+	.	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	CDS	4404361	4405204	1	+	1	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	exon	4404361	4405204	.	+	.	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
Ledus.S4	AUGUSTUS	stop_codon	4405205	4405207	.	+	0	transcript_id "Ledus.S4G061200.t1"; gene_id "Ledus.S4G061200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4885.t1 is derived from g2323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20520818	20525000	.	+	.	Ledus.S1G230600
Ledus.S1	AUGUSTUS	transcript	20520818	20525000	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	start_codon	20520818	20520820	.	+	0	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20520818	20521090	0.56	+	0	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20520818	20521090	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20521091	20521176	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20521177	20521366	0.47	+	0	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20521177	20521366	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20521367	20521452	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20521453	20521673	1	+	2	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20521453	20521673	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20521674	20521788	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20521789	20521930	1	+	0	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20521789	20521930	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20521931	20522086	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20522087	20522193	1	+	2	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20522087	20522193	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20522194	20522289	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20522290	20522546	0.83	+	0	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20522290	20522546	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20522547	20522623	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20522624	20522732	0.3	+	1	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20522624	20522732	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20522733	20522856	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20522857	20522929	0.35	+	0	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20522857	20522929	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20522930	20523166	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20523167	20523294	0.45	+	2	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20523167	20523294	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20523295	20523372	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20523373	20523634	1	+	0	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20523373	20523634	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20523635	20523720	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20523721	20523854	1	+	2	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20523721	20523854	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20523855	20523931	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20523932	20524010	1	+	0	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20523932	20524010	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20524011	20524099	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20524100	20524191	1	+	2	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20524100	20524191	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20524192	20524285	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20524286	20524363	1	+	0	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20524286	20524363	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20524364	20524440	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20524441	20524503	1	+	0	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20524441	20524503	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20524504	20524613	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20524614	20524848	1	+	0	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20524614	20524848	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	intron	20524849	20524935	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	CDS	20524936	20525000	1	+	2	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	exon	20524936	20525000	.	+	.	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
Ledus.S1	AUGUSTUS	stop_codon	20525001	20525003	.	+	0	transcript_id "Ledus.S1G230600.t1"; gene_id "Ledus.S1G230600"
# This transcript jg2143.t2 is derived from g9006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2143.t3 is derived from g9006.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2144.t1 is derived from g9007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15257567	15257990	.	-	.	Ledus.S2G202600
Ledus.S2	AUGUSTUS	transcript	15257567	15257990	.	-	.	transcript_id "Ledus.S2G202600.t1"; gene_id "Ledus.S2G202600"
Ledus.S2	AUGUSTUS	stop_codon	15257564	15257566	.	-	0	transcript_id "Ledus.S2G202600.t1"; gene_id "Ledus.S2G202600"
Ledus.S2	AUGUSTUS	CDS	15257567	15257810	0.32	-	1	transcript_id "Ledus.S2G202600.t1"; gene_id "Ledus.S2G202600"
Ledus.S2	AUGUSTUS	exon	15257567	15257810	.	-	.	transcript_id "Ledus.S2G202600.t1"; gene_id "Ledus.S2G202600"
Ledus.S2	AUGUSTUS	intron	15257811	15257889	.	-	.	transcript_id "Ledus.S2G202600.t1"; gene_id "Ledus.S2G202600"
Ledus.S2	AUGUSTUS	CDS	15257890	15257990	0.64	-	0	transcript_id "Ledus.S2G202600.t1"; gene_id "Ledus.S2G202600"
Ledus.S2	AUGUSTUS	exon	15257890	15257990	.	-	.	transcript_id "Ledus.S2G202600.t1"; gene_id "Ledus.S2G202600"
Ledus.S2	AUGUSTUS	start_codon	15257988	15257990	.	-	0	transcript_id "Ledus.S2G202600.t1"; gene_id "Ledus.S2G202600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg756.t1 is derived from g7617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4848875	4851256	.	+	.	Ledus.S2G063800
Ledus.S2	AUGUSTUS	transcript	4848909	4851256	.	+	.	transcript_id "Ledus.S2G063800.t1"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	start_codon	4848909	4848911	.	+	0	transcript_id "Ledus.S2G063800.t1"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	CDS	4848909	4848961	0.67	+	0	transcript_id "Ledus.S2G063800.t1"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	exon	4848909	4848961	.	+	.	transcript_id "Ledus.S2G063800.t1"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	intron	4848962	4849044	.	+	.	transcript_id "Ledus.S2G063800.t1"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	CDS	4849045	4851256	0.82	+	1	transcript_id "Ledus.S2G063800.t1"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	exon	4849045	4851256	.	+	.	transcript_id "Ledus.S2G063800.t1"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	stop_codon	4851257	4851259	.	+	0	transcript_id "Ledus.S2G063800.t1"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	transcript	4848875	4851256	.	+	.	transcript_id "Ledus.S2G063800.t2"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	start_codon	4848875	4848877	.	+	0	transcript_id "Ledus.S2G063800.t2"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	CDS	4848875	4848961	0.49	+	0	transcript_id "Ledus.S2G063800.t2"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	exon	4848875	4848961	.	+	.	transcript_id "Ledus.S2G063800.t2"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	intron	4848962	4849051	.	+	.	transcript_id "Ledus.S2G063800.t2"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	CDS	4849052	4851256	0.68	+	0	transcript_id "Ledus.S2G063800.t2"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	exon	4849052	4851256	.	+	.	transcript_id "Ledus.S2G063800.t2"; gene_id "Ledus.S2G063800"
Ledus.S2	AUGUSTUS	stop_codon	4851257	4851259	.	+	0	transcript_id "Ledus.S2G063800.t2"; gene_id "Ledus.S2G063800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1585.t1 is derived from g8446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11141907	11142467	.	-	.	Ledus.S2G146700
Ledus.S2	AUGUSTUS	transcript	11141907	11142467	.	-	.	transcript_id "Ledus.S2G146700.t1"; gene_id "Ledus.S2G146700"
Ledus.S2	AUGUSTUS	stop_codon	11141904	11141906	.	-	0	transcript_id "Ledus.S2G146700.t1"; gene_id "Ledus.S2G146700"
Ledus.S2	AUGUSTUS	CDS	11141907	11142467	0.26	-	0	transcript_id "Ledus.S2G146700.t1"; gene_id "Ledus.S2G146700"
Ledus.S2	AUGUSTUS	exon	11141907	11142467	.	-	.	transcript_id "Ledus.S2G146700.t1"; gene_id "Ledus.S2G146700"
Ledus.S2	AUGUSTUS	start_codon	11142465	11142467	.	-	0	transcript_id "Ledus.S2G146700.t1"; gene_id "Ledus.S2G146700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2836.t1 is derived from g270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4093295	4095651	.	-	.	Ledus.S1G025700
Ledus.S1	AUGUSTUS	transcript	4093295	4095651	.	-	.	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	stop_codon	4093292	4093294	.	-	0	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	CDS	4093295	4094828	1	-	1	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	exon	4093295	4094828	.	-	.	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	intron	4094829	4095009	.	-	.	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	CDS	4095010	4095018	1	-	1	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	exon	4095010	4095018	.	-	.	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	intron	4095019	4095117	.	-	.	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	CDS	4095118	4095184	0.76	-	2	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	exon	4095118	4095184	.	-	.	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	intron	4095185	4095323	.	-	.	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	CDS	4095324	4095356	1	-	2	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	exon	4095324	4095356	.	-	.	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	intron	4095357	4095581	.	-	.	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	CDS	4095582	4095651	1	-	0	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	exon	4095582	4095651	.	-	.	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
Ledus.S1	AUGUSTUS	start_codon	4095649	4095651	.	-	0	transcript_id "Ledus.S1G025700.t1"; gene_id "Ledus.S1G025700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8896.t1 is derived from g9926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2928475	2929163	.	+	.	Ledus.S3G037300
Ledus.S3	AUGUSTUS	transcript	2928475	2929163	.	+	.	transcript_id "Ledus.S3G037300.t1"; gene_id "Ledus.S3G037300"
Ledus.S3	AUGUSTUS	start_codon	2928475	2928477	.	+	0	transcript_id "Ledus.S3G037300.t1"; gene_id "Ledus.S3G037300"
Ledus.S3	AUGUSTUS	CDS	2928475	2928633	0.69	+	0	transcript_id "Ledus.S3G037300.t1"; gene_id "Ledus.S3G037300"
Ledus.S3	AUGUSTUS	exon	2928475	2928633	.	+	.	transcript_id "Ledus.S3G037300.t1"; gene_id "Ledus.S3G037300"
Ledus.S3	AUGUSTUS	intron	2928634	2928721	.	+	.	transcript_id "Ledus.S3G037300.t1"; gene_id "Ledus.S3G037300"
Ledus.S3	AUGUSTUS	CDS	2928722	2928885	0.82	+	0	transcript_id "Ledus.S3G037300.t1"; gene_id "Ledus.S3G037300"
Ledus.S3	AUGUSTUS	exon	2928722	2928885	.	+	.	transcript_id "Ledus.S3G037300.t1"; gene_id "Ledus.S3G037300"
Ledus.S3	AUGUSTUS	intron	2928886	2929150	.	+	.	transcript_id "Ledus.S3G037300.t1"; gene_id "Ledus.S3G037300"
Ledus.S3	AUGUSTUS	CDS	2929151	2929163	0.98	+	1	transcript_id "Ledus.S3G037300.t1"; gene_id "Ledus.S3G037300"
Ledus.S3	AUGUSTUS	exon	2929151	2929163	.	+	.	transcript_id "Ledus.S3G037300.t1"; gene_id "Ledus.S3G037300"
Ledus.S3	AUGUSTUS	stop_codon	2929164	2929166	.	+	0	transcript_id "Ledus.S3G037300.t1"; gene_id "Ledus.S3G037300"
# This transcript jg9853.t2 is derived from g10883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9854.t1 is derived from g10884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10577515	10578388	.	-	.	Ledus.S3G133100
Ledus.S3	AUGUSTUS	transcript	10577515	10578388	.	-	.	transcript_id "Ledus.S3G133100.t1"; gene_id "Ledus.S3G133100"
Ledus.S3	AUGUSTUS	stop_codon	10577512	10577514	.	-	0	transcript_id "Ledus.S3G133100.t1"; gene_id "Ledus.S3G133100"
Ledus.S3	AUGUSTUS	CDS	10577515	10577796	0.76	-	0	transcript_id "Ledus.S3G133100.t1"; gene_id "Ledus.S3G133100"
Ledus.S3	AUGUSTUS	exon	10577515	10577796	.	-	.	transcript_id "Ledus.S3G133100.t1"; gene_id "Ledus.S3G133100"
Ledus.S3	AUGUSTUS	intron	10577797	10577993	.	-	.	transcript_id "Ledus.S3G133100.t1"; gene_id "Ledus.S3G133100"
Ledus.S3	AUGUSTUS	CDS	10577994	10578170	0.49	-	0	transcript_id "Ledus.S3G133100.t1"; gene_id "Ledus.S3G133100"
Ledus.S3	AUGUSTUS	exon	10577994	10578170	.	-	.	transcript_id "Ledus.S3G133100.t1"; gene_id "Ledus.S3G133100"
Ledus.S3	AUGUSTUS	intron	10578171	10578295	.	-	.	transcript_id "Ledus.S3G133100.t1"; gene_id "Ledus.S3G133100"
Ledus.S3	AUGUSTUS	CDS	10578296	10578388	0.58	-	0	transcript_id "Ledus.S3G133100.t1"; gene_id "Ledus.S3G133100"
Ledus.S3	AUGUSTUS	exon	10578296	10578388	.	-	.	transcript_id "Ledus.S3G133100.t1"; gene_id "Ledus.S3G133100"
Ledus.S3	AUGUSTUS	start_codon	10578386	10578388	.	-	0	transcript_id "Ledus.S3G133100.t1"; gene_id "Ledus.S3G133100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9105.t1 is derived from g10135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4614376	4616109	.	+	.	Ledus.S3G058200
Ledus.S3	AUGUSTUS	transcript	4614376	4616109	.	+	.	transcript_id "Ledus.S3G058200.t1"; gene_id "Ledus.S3G058200"
Ledus.S3	AUGUSTUS	start_codon	4614376	4614378	.	+	0	transcript_id "Ledus.S3G058200.t1"; gene_id "Ledus.S3G058200"
Ledus.S3	AUGUSTUS	CDS	4614376	4615157	0.54	+	0	transcript_id "Ledus.S3G058200.t1"; gene_id "Ledus.S3G058200"
Ledus.S3	AUGUSTUS	exon	4614376	4615157	.	+	.	transcript_id "Ledus.S3G058200.t1"; gene_id "Ledus.S3G058200"
Ledus.S3	AUGUSTUS	intron	4615158	4615237	.	+	.	transcript_id "Ledus.S3G058200.t1"; gene_id "Ledus.S3G058200"
Ledus.S3	AUGUSTUS	CDS	4615238	4615504	0.49	+	1	transcript_id "Ledus.S3G058200.t1"; gene_id "Ledus.S3G058200"
Ledus.S3	AUGUSTUS	exon	4615238	4615504	.	+	.	transcript_id "Ledus.S3G058200.t1"; gene_id "Ledus.S3G058200"
Ledus.S3	AUGUSTUS	intron	4615505	4615982	.	+	.	transcript_id "Ledus.S3G058200.t1"; gene_id "Ledus.S3G058200"
Ledus.S3	AUGUSTUS	CDS	4615983	4616109	0.82	+	1	transcript_id "Ledus.S3G058200.t1"; gene_id "Ledus.S3G058200"
Ledus.S3	AUGUSTUS	exon	4615983	4616109	.	+	.	transcript_id "Ledus.S3G058200.t1"; gene_id "Ledus.S3G058200"
Ledus.S3	AUGUSTUS	stop_codon	4616110	4616112	.	+	0	transcript_id "Ledus.S3G058200.t1"; gene_id "Ledus.S3G058200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8865.t1 is derived from g9895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2597772	2598119	.	+	.	Ledus.S3G034200
Ledus.S3	AUGUSTUS	transcript	2597772	2598119	.	+	.	transcript_id "Ledus.S3G034200.t1"; gene_id "Ledus.S3G034200"
Ledus.S3	AUGUSTUS	start_codon	2597772	2597774	.	+	0	transcript_id "Ledus.S3G034200.t1"; gene_id "Ledus.S3G034200"
Ledus.S3	AUGUSTUS	CDS	2597772	2598119	0.98	+	0	transcript_id "Ledus.S3G034200.t1"; gene_id "Ledus.S3G034200"
Ledus.S3	AUGUSTUS	exon	2597772	2598119	.	+	.	transcript_id "Ledus.S3G034200.t1"; gene_id "Ledus.S3G034200"
Ledus.S3	AUGUSTUS	stop_codon	2598120	2598122	.	+	0	transcript_id "Ledus.S3G034200.t1"; gene_id "Ledus.S3G034200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11292.t1 is derived from g4910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3413175	3416427	.	+	.	Ledus.S4G044800
Ledus.S4	AUGUSTUS	transcript	3413175	3416427	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	start_codon	3413175	3413177	.	+	0	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	CDS	3413175	3413544	0.5	+	0	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	exon	3413175	3413544	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	intron	3413545	3413645	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	CDS	3413646	3413717	1	+	2	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	exon	3413646	3413717	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	intron	3413718	3413852	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	CDS	3413853	3413986	1	+	2	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	exon	3413853	3413986	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	intron	3413987	3414147	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	CDS	3414148	3414627	1	+	0	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	exon	3414148	3414627	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	intron	3414628	3414771	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	CDS	3414772	3415539	0.95	+	0	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	exon	3414772	3415539	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	intron	3415540	3415625	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	CDS	3415626	3415853	1	+	0	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	exon	3415626	3415853	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	intron	3415854	3415932	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	CDS	3415933	3416427	1	+	0	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	exon	3415933	3416427	.	+	.	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
Ledus.S4	AUGUSTUS	stop_codon	3416428	3416430	.	+	0	transcript_id "Ledus.S4G044800.t1"; gene_id "Ledus.S4G044800"
# This transcript jg8182.t2 is derived from g12853.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8183.t1 is derived from g12854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9712262	9713676	.	-	.	Ledus.S5G096100
Ledus.S5	AUGUSTUS	transcript	9712262	9713676	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	stop_codon	9712259	9712261	.	-	0	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	CDS	9712262	9712280	0.96	-	1	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	exon	9712262	9712280	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	intron	9712281	9712371	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	CDS	9712372	9712403	0.96	-	0	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	exon	9712372	9712403	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	intron	9712404	9712481	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	CDS	9712482	9712534	0.85	-	2	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	exon	9712482	9712534	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	intron	9712535	9712616	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	CDS	9712617	9712848	1	-	0	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	exon	9712617	9712848	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	intron	9712849	9712977	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	CDS	9712978	9713057	1	-	2	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	exon	9712978	9713057	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	intron	9713058	9713152	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	CDS	9713153	9713306	1	-	0	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	exon	9713153	9713306	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	intron	9713307	9713376	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	CDS	9713377	9713498	0.98	-	2	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	exon	9713377	9713498	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	intron	9713499	9713615	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	CDS	9713616	9713676	0.94	-	0	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	exon	9713616	9713676	.	-	.	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
Ledus.S5	AUGUSTUS	start_codon	9713674	9713676	.	-	0	transcript_id "Ledus.S5G096100.t1"; gene_id "Ledus.S5G096100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6641.t1 is derived from g4084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32821376	32821918	.	+	.	Ledus.S1G406200
Ledus.S1	AUGUSTUS	transcript	32821376	32821918	.	+	.	transcript_id "Ledus.S1G406200.t1"; gene_id "Ledus.S1G406200"
Ledus.S1	AUGUSTUS	start_codon	32821376	32821378	.	+	0	transcript_id "Ledus.S1G406200.t1"; gene_id "Ledus.S1G406200"
Ledus.S1	AUGUSTUS	CDS	32821376	32821609	0.51	+	0	transcript_id "Ledus.S1G406200.t1"; gene_id "Ledus.S1G406200"
Ledus.S1	AUGUSTUS	exon	32821376	32821609	.	+	.	transcript_id "Ledus.S1G406200.t1"; gene_id "Ledus.S1G406200"
Ledus.S1	AUGUSTUS	intron	32821610	32821708	.	+	.	transcript_id "Ledus.S1G406200.t1"; gene_id "Ledus.S1G406200"
Ledus.S1	AUGUSTUS	CDS	32821709	32821918	0.55	+	0	transcript_id "Ledus.S1G406200.t1"; gene_id "Ledus.S1G406200"
Ledus.S1	AUGUSTUS	exon	32821709	32821918	.	+	.	transcript_id "Ledus.S1G406200.t1"; gene_id "Ledus.S1G406200"
Ledus.S1	AUGUSTUS	stop_codon	32821919	32821921	.	+	0	transcript_id "Ledus.S1G406200.t1"; gene_id "Ledus.S1G406200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1770.t1 is derived from g8632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12424358	12426711	.	-	.	Ledus.S2G165200
Ledus.S2	AUGUSTUS	transcript	12424358	12426711	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	stop_codon	12424355	12424357	.	-	0	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	CDS	12424358	12424547	1	-	1	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	exon	12424358	12424547	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	intron	12424548	12424641	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	CDS	12424642	12424853	1	-	0	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	exon	12424642	12424853	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	intron	12424854	12424961	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	CDS	12424962	12425117	1	-	0	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	exon	12424962	12425117	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	intron	12425118	12425205	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	CDS	12425206	12425825	1	-	2	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	exon	12425206	12425825	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	intron	12425826	12425924	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	CDS	12425925	12426174	0.8	-	0	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	exon	12425925	12426174	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	intron	12426175	12426297	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	CDS	12426298	12426353	0.79	-	2	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	exon	12426298	12426353	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	intron	12426354	12426635	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	CDS	12426636	12426711	0.83	-	0	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	exon	12426636	12426711	.	-	.	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
Ledus.S2	AUGUSTUS	start_codon	12426709	12426711	.	-	0	transcript_id "Ledus.S2G165200.t1"; gene_id "Ledus.S2G165200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6530.t1 is derived from g3973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32135615	32137993	.	-	.	Ledus.S1G395100
Ledus.S1	AUGUSTUS	transcript	32135615	32137993	.	-	.	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	stop_codon	32135612	32135614	.	-	0	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	CDS	32135615	32135872	0.92	-	0	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	exon	32135615	32135872	.	-	.	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	intron	32135873	32135983	.	-	.	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	CDS	32135984	32136242	0.99	-	1	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	exon	32135984	32136242	.	-	.	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	intron	32136243	32136367	.	-	.	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	CDS	32136368	32136651	0.93	-	0	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	exon	32136368	32136651	.	-	.	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	intron	32136652	32136812	.	-	.	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	CDS	32136813	32136902	1	-	0	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	exon	32136813	32136902	.	-	.	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	intron	32136903	32137043	.	-	.	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	CDS	32137044	32137212	1	-	1	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	exon	32137044	32137212	.	-	.	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	intron	32137213	32137403	.	-	.	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	CDS	32137404	32137993	0.39	-	0	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	exon	32137404	32137993	.	-	.	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
Ledus.S1	AUGUSTUS	start_codon	32137991	32137993	.	-	0	transcript_id "Ledus.S1G395100.t1"; gene_id "Ledus.S1G395100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12655.t1 is derived from g6277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13627973	13628334	.	-	.	Ledus.S4G181100
Ledus.S4	AUGUSTUS	transcript	13627973	13628334	.	-	.	transcript_id "Ledus.S4G181100.t1"; gene_id "Ledus.S4G181100"
Ledus.S4	AUGUSTUS	stop_codon	13627970	13627972	.	-	0	transcript_id "Ledus.S4G181100.t1"; gene_id "Ledus.S4G181100"
Ledus.S4	AUGUSTUS	CDS	13627973	13628112	0.83	-	2	transcript_id "Ledus.S4G181100.t1"; gene_id "Ledus.S4G181100"
Ledus.S4	AUGUSTUS	exon	13627973	13628112	.	-	.	transcript_id "Ledus.S4G181100.t1"; gene_id "Ledus.S4G181100"
Ledus.S4	AUGUSTUS	intron	13628113	13628264	.	-	.	transcript_id "Ledus.S4G181100.t1"; gene_id "Ledus.S4G181100"
Ledus.S4	AUGUSTUS	CDS	13628265	13628334	1	-	0	transcript_id "Ledus.S4G181100.t1"; gene_id "Ledus.S4G181100"
Ledus.S4	AUGUSTUS	exon	13628265	13628334	.	-	.	transcript_id "Ledus.S4G181100.t1"; gene_id "Ledus.S4G181100"
Ledus.S4	AUGUSTUS	start_codon	13628332	13628334	.	-	0	transcript_id "Ledus.S4G181100.t1"; gene_id "Ledus.S4G181100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1875.t1 is derived from g8738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13118384	13129068	.	-	.	Ledus.S2G175700
Ledus.S2	AUGUSTUS	transcript	13118384	13129068	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	stop_codon	13118381	13118383	.	-	0	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13118384	13118414	0.83	-	1	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13118384	13118414	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13118415	13118541	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13118542	13118622	0.9	-	1	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13118542	13118622	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13118623	13118710	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13118711	13118742	0.95	-	0	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13118711	13118742	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13118743	13119158	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13119159	13120781	0.82	-	0	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13119159	13120781	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13120782	13121043	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13121044	13121166	1	-	0	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13121044	13121166	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13121167	13121505	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13121506	13121598	1	-	0	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13121506	13121598	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13121599	13121727	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13121728	13122301	0.73	-	1	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13121728	13122301	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13122302	13122538	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13122539	13123134	0.95	-	0	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13122539	13123134	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13123135	13123291	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13123292	13123395	0.98	-	2	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13123292	13123395	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13123396	13123516	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13123517	13126960	0.51	-	2	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13123517	13126960	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13126961	13127121	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13127122	13127647	0.8	-	0	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13127122	13127647	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13127648	13127863	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13127864	13127967	1	-	2	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13127864	13127967	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13127968	13128120	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13128121	13128359	0.95	-	1	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13128121	13128359	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13128360	13128616	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13128617	13128660	0.94	-	0	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13128617	13128660	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	intron	13128661	13128828	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	CDS	13128829	13129068	0.96	-	0	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	exon	13128829	13129068	.	-	.	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
Ledus.S2	AUGUSTUS	start_codon	13129066	13129068	.	-	0	transcript_id "Ledus.S2G175700.t1"; gene_id "Ledus.S2G175700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8112.t1 is derived from g12783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9173394	9174610	.	+	.	Ledus.S5G089000
Ledus.S5	AUGUSTUS	transcript	9173394	9174610	.	+	.	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	start_codon	9173394	9173396	.	+	0	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	CDS	9173394	9173448	0.78	+	0	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	exon	9173394	9173448	.	+	.	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	intron	9173449	9173525	.	+	.	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	CDS	9173526	9173618	1	+	2	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	exon	9173526	9173618	.	+	.	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	intron	9173619	9173702	.	+	.	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	CDS	9173703	9173773	0.95	+	2	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	exon	9173703	9173773	.	+	.	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	intron	9173774	9173881	.	+	.	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	CDS	9173882	9173950	1	+	0	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	exon	9173882	9173950	.	+	.	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	intron	9173951	9174325	.	+	.	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	CDS	9174326	9174610	0.98	+	0	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	exon	9174326	9174610	.	+	.	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
Ledus.S5	AUGUSTUS	stop_codon	9174611	9174613	.	+	0	transcript_id "Ledus.S5G089000.t1"; gene_id "Ledus.S5G089000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8812.t1 is derived from g9842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2101252	2103432	.	+	.	Ledus.S3G028900
Ledus.S3	AUGUSTUS	transcript	2101252	2103432	.	+	.	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	start_codon	2101252	2101254	.	+	0	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	CDS	2101252	2101317	0.71	+	0	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	exon	2101252	2101317	.	+	.	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	intron	2101318	2101488	.	+	.	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	CDS	2101489	2102239	0.96	+	0	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	exon	2101489	2102239	.	+	.	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	intron	2102240	2102527	.	+	.	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	CDS	2102528	2102700	1	+	2	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	exon	2102528	2102700	.	+	.	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	intron	2102701	2102977	.	+	.	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	CDS	2102978	2103074	1	+	0	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	exon	2102978	2103074	.	+	.	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	intron	2103075	2103163	.	+	.	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	CDS	2103164	2103242	1	+	2	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	exon	2103164	2103242	.	+	.	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	intron	2103243	2103344	.	+	.	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	CDS	2103345	2103432	0.95	+	1	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	exon	2103345	2103432	.	+	.	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
Ledus.S3	AUGUSTUS	stop_codon	2103433	2103435	.	+	0	transcript_id "Ledus.S3G028900.t1"; gene_id "Ledus.S3G028900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5524.t1 is derived from g2963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24939994	24941592	.	-	.	Ledus.S1G294500
Ledus.S1	AUGUSTUS	transcript	24939994	24941592	.	-	.	transcript_id "Ledus.S1G294500.t1"; gene_id "Ledus.S1G294500"
Ledus.S1	AUGUSTUS	stop_codon	24939991	24939993	.	-	0	transcript_id "Ledus.S1G294500.t1"; gene_id "Ledus.S1G294500"
Ledus.S1	AUGUSTUS	CDS	24939994	24941592	0.93	-	0	transcript_id "Ledus.S1G294500.t1"; gene_id "Ledus.S1G294500"
Ledus.S1	AUGUSTUS	exon	24939994	24941592	.	-	.	transcript_id "Ledus.S1G294500.t1"; gene_id "Ledus.S1G294500"
Ledus.S1	AUGUSTUS	start_codon	24941590	24941592	.	-	0	transcript_id "Ledus.S1G294500.t1"; gene_id "Ledus.S1G294500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6281.t1 is derived from g3724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30109728	30111344	.	-	.	Ledus.S1G370200
Ledus.S1	AUGUSTUS	transcript	30109728	30111344	.	-	.	transcript_id "Ledus.S1G370200.t1"; gene_id "Ledus.S1G370200"
Ledus.S1	AUGUSTUS	stop_codon	30109725	30109727	.	-	0	transcript_id "Ledus.S1G370200.t1"; gene_id "Ledus.S1G370200"
Ledus.S1	AUGUSTUS	CDS	30109728	30110762	1	-	0	transcript_id "Ledus.S1G370200.t1"; gene_id "Ledus.S1G370200"
Ledus.S1	AUGUSTUS	exon	30109728	30110762	.	-	.	transcript_id "Ledus.S1G370200.t1"; gene_id "Ledus.S1G370200"
Ledus.S1	AUGUSTUS	intron	30110763	30110840	.	-	.	transcript_id "Ledus.S1G370200.t1"; gene_id "Ledus.S1G370200"
Ledus.S1	AUGUSTUS	CDS	30110841	30111344	0.84	-	0	transcript_id "Ledus.S1G370200.t1"; gene_id "Ledus.S1G370200"
Ledus.S1	AUGUSTUS	exon	30110841	30111344	.	-	.	transcript_id "Ledus.S1G370200.t1"; gene_id "Ledus.S1G370200"
Ledus.S1	AUGUSTUS	start_codon	30111342	30111344	.	-	0	transcript_id "Ledus.S1G370200.t1"; gene_id "Ledus.S1G370200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3831.t1 is derived from g1267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12849393	12854451	.	+	.	Ledus.S1G125200
Ledus.S1	AUGUSTUS	transcript	12849393	12854451	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	start_codon	12849393	12849395	.	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12849393	12849491	0.57	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12849393	12849491	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12849492	12849573	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12849574	12849687	0.98	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12849574	12849687	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12849688	12849817	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12849818	12849910	1	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12849818	12849910	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12849911	12850003	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12850004	12850069	1	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12850004	12850069	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12850070	12850177	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12850178	12850276	0.99	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12850178	12850276	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12850277	12850458	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12850459	12850532	1	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12850459	12850532	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12850533	12850628	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12850629	12850741	1	+	1	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12850629	12850741	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12850742	12850838	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12850839	12850927	0.99	+	2	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12850839	12850927	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12850928	12851034	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12851035	12851121	1	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12851035	12851121	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12851122	12851311	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12851312	12851380	1	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12851312	12851380	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12851381	12851518	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12851519	12851677	0.44	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12851519	12851677	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12851678	12851918	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12851919	12852122	0.55	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12851919	12852122	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12852123	12852200	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12852201	12852428	1	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12852201	12852428	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12852429	12852518	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12852519	12852590	1	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12852519	12852590	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12852591	12852672	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12852673	12852739	1	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12852673	12852739	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12852740	12852830	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12852831	12852943	1	+	2	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12852831	12852943	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12852944	12853038	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12853039	12853087	1	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12853039	12853087	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12853088	12853174	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12853175	12853236	1	+	2	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12853175	12853236	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12853237	12853315	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12853316	12853439	1	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12853316	12853439	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12853440	12853517	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12853518	12853585	1	+	2	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12853518	12853585	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12853586	12853679	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12853680	12853723	0.97	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12853680	12853723	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12853724	12853834	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12853835	12853898	1	+	1	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12853835	12853898	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12853899	12853988	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12853989	12854051	1	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12853989	12854051	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	intron	12854052	12854139	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	CDS	12854140	12854451	0.98	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	exon	12854140	12854451	.	+	.	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
Ledus.S1	AUGUSTUS	stop_codon	12854452	12854454	.	+	0	transcript_id "Ledus.S1G125200.t1"; gene_id "Ledus.S1G125200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2556.t1 is derived from g9419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18953238	18957215	.	+	.	Ledus.S2G243800
Ledus.S2	AUGUSTUS	transcript	18953238	18957215	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	start_codon	18953238	18953240	.	+	0	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	CDS	18953238	18954714	0.92	+	0	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	exon	18953238	18954714	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	intron	18954715	18954972	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	CDS	18954973	18955519	1	+	2	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	exon	18954973	18955519	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	intron	18955520	18955673	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	CDS	18955674	18955937	1	+	1	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	exon	18955674	18955937	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	intron	18955938	18956040	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	CDS	18956041	18956164	1	+	1	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	exon	18956041	18956164	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	intron	18956165	18956253	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	CDS	18956254	18956547	1	+	0	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	exon	18956254	18956547	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	intron	18956548	18956644	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	CDS	18956645	18956847	1	+	0	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	exon	18956645	18956847	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	intron	18956848	18956980	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	CDS	18956981	18957215	0.62	+	1	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	exon	18956981	18957215	.	+	.	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
Ledus.S2	AUGUSTUS	stop_codon	18957216	18957218	.	+	0	transcript_id "Ledus.S2G243800.t1"; gene_id "Ledus.S2G243800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1353.t1 is derived from g8214.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9426123	9428019	.	-	.	Ledus.S2G123500
Ledus.S2	AUGUSTUS	transcript	9426123	9428019	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	stop_codon	9426120	9426122	.	-	0	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9426123	9426266	1	-	0	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9426123	9426266	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9426267	9426354	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9426355	9426508	1	-	1	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9426355	9426508	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9426509	9426654	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9426655	9426730	1	-	2	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9426655	9426730	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9426731	9426810	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9426811	9426915	1	-	2	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9426811	9426915	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9426916	9426990	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9426991	9427109	1	-	1	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9426991	9427109	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9427110	9427240	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9427241	9427449	1	-	0	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9427241	9427449	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9427450	9427542	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9427543	9427601	0.74	-	2	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9427543	9427601	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9427602	9427681	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9427682	9427748	1	-	0	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9427682	9427748	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9427749	9427839	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9427840	9428019	0.97	-	0	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9427840	9428019	.	-	.	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	start_codon	9428017	9428019	.	-	0	transcript_id "Ledus.S2G123500.t1"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	transcript	9426123	9428019	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	stop_codon	9426120	9426122	.	-	0	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9426123	9426266	1	-	0	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9426123	9426266	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9426267	9426348	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9426349	9426508	0.96	-	1	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9426349	9426508	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9426509	9426654	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9426655	9426730	1	-	2	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9426655	9426730	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9426731	9426810	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9426811	9426915	1	-	2	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9426811	9426915	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9426916	9426990	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9426991	9427109	1	-	1	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9426991	9427109	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9427110	9427240	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9427241	9427449	1	-	0	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9427241	9427449	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9427450	9427542	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9427543	9427601	0.65	-	2	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9427543	9427601	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9427602	9427681	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9427682	9427748	1	-	0	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9427682	9427748	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	intron	9427749	9427839	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	CDS	9427840	9428019	0.97	-	0	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	exon	9427840	9428019	.	-	.	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
Ledus.S2	AUGUSTUS	start_codon	9428017	9428019	.	-	0	transcript_id "Ledus.S2G123500.t2"; gene_id "Ledus.S2G123500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5812.t1 is derived from g3254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27065084	27066666	.	+	.	Ledus.S1G323300
Ledus.S1	AUGUSTUS	transcript	27065084	27066666	.	+	.	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	start_codon	27065084	27065086	.	+	0	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	CDS	27065084	27065198	0.45	+	0	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	exon	27065084	27065198	.	+	.	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	intron	27065199	27065653	.	+	.	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	CDS	27065654	27065685	0.76	+	2	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	exon	27065654	27065685	.	+	.	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	intron	27065686	27066081	.	+	.	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	CDS	27066082	27066315	0.19	+	0	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	exon	27066082	27066315	.	+	.	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	intron	27066316	27066567	.	+	.	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	CDS	27066568	27066666	0.25	+	0	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	exon	27066568	27066666	.	+	.	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
Ledus.S1	AUGUSTUS	stop_codon	27066667	27066669	.	+	0	transcript_id "Ledus.S1G323300.t1"; gene_id "Ledus.S1G323300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6625.t1 is derived from g4068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32785215	32785712	.	-	.	Ledus.S1G404600
Ledus.S1	AUGUSTUS	transcript	32785215	32785712	.	-	.	transcript_id "Ledus.S1G404600.t1"; gene_id "Ledus.S1G404600"
Ledus.S1	AUGUSTUS	stop_codon	32785212	32785214	.	-	0	transcript_id "Ledus.S1G404600.t1"; gene_id "Ledus.S1G404600"
Ledus.S1	AUGUSTUS	CDS	32785215	32785712	0.99	-	0	transcript_id "Ledus.S1G404600.t1"; gene_id "Ledus.S1G404600"
Ledus.S1	AUGUSTUS	exon	32785215	32785712	.	-	.	transcript_id "Ledus.S1G404600.t1"; gene_id "Ledus.S1G404600"
Ledus.S1	AUGUSTUS	start_codon	32785710	32785712	.	-	0	transcript_id "Ledus.S1G404600.t1"; gene_id "Ledus.S1G404600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6189.t1 is derived from g3632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29464583	29466894	.	-	.	Ledus.S1G361000
Ledus.S1	AUGUSTUS	transcript	29464583	29466894	.	-	.	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	stop_codon	29464580	29464582	.	-	0	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	CDS	29464583	29465109	0.82	-	2	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	exon	29464583	29465109	.	-	.	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	intron	29465110	29465196	.	-	.	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	CDS	29465197	29466022	0.93	-	0	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	exon	29465197	29466022	.	-	.	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	intron	29466023	29466319	.	-	.	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	CDS	29466320	29466361	0.76	-	0	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	exon	29466320	29466361	.	-	.	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	intron	29466362	29466506	.	-	.	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	CDS	29466507	29466620	0.66	-	0	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	exon	29466507	29466620	.	-	.	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	intron	29466621	29466855	.	-	.	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	CDS	29466856	29466894	0.88	-	0	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	exon	29466856	29466894	.	-	.	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
Ledus.S1	AUGUSTUS	start_codon	29466892	29466894	.	-	0	transcript_id "Ledus.S1G361000.t1"; gene_id "Ledus.S1G361000"
# This transcript jg11598.t2 is derived from g5216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11599.t1 is derived from g5217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5456640	5460611	.	-	.	Ledus.S4G075500
Ledus.S4	AUGUSTUS	transcript	5456640	5460611	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	stop_codon	5456637	5456639	.	-	0	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5456640	5456849	0.81	-	0	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5456640	5456849	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	intron	5456850	5456936	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5456937	5457016	0.82	-	2	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5456937	5457016	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	intron	5457017	5457153	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5457154	5457301	0.9	-	0	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5457154	5457301	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	intron	5457302	5457398	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5457399	5457503	1	-	0	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5457399	5457503	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	intron	5457504	5457597	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5457598	5457730	1	-	1	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5457598	5457730	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	intron	5457731	5457887	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5457888	5458092	1	-	2	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5457888	5458092	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	intron	5458093	5458221	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5458222	5458327	1	-	0	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5458222	5458327	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	intron	5458328	5458424	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5458425	5459268	0.98	-	1	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5458425	5459268	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	intron	5459269	5459357	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5459358	5459386	0.99	-	0	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5459358	5459386	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	intron	5459387	5459465	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5459466	5459531	0.99	-	0	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5459466	5459531	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	intron	5459532	5459682	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5459683	5459788	1	-	1	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5459683	5459788	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	intron	5459789	5459899	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5459900	5460072	0.81	-	0	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5459900	5460072	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	intron	5460073	5460173	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	CDS	5460174	5460611	0.33	-	0	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	exon	5460174	5460611	.	-	.	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
Ledus.S4	AUGUSTUS	start_codon	5460609	5460611	.	-	0	transcript_id "Ledus.S4G075500.t1"; gene_id "Ledus.S4G075500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12870.t1 is derived from g4443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	139123	141529	.	-	.	Ledus.C10G001300
Ledus.C10	AUGUSTUS	transcript	139123	141529	.	-	.	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	stop_codon	139120	139122	.	-	0	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	CDS	139123	139326	0.93	-	0	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	exon	139123	139326	.	-	.	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	intron	139327	139416	.	-	.	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	CDS	139417	139510	1	-	1	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	exon	139417	139510	.	-	.	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	intron	139511	139632	.	-	.	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	CDS	139633	139691	1	-	0	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	exon	139633	139691	.	-	.	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	intron	139692	139782	.	-	.	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	CDS	139783	139875	1	-	0	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	exon	139783	139875	.	-	.	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	intron	139876	139965	.	-	.	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	CDS	139966	140118	1	-	0	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	exon	139966	140118	.	-	.	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	intron	140119	140299	.	-	.	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	CDS	140300	141529	0.26	-	0	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	exon	140300	141529	.	-	.	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
Ledus.C10	AUGUSTUS	start_codon	141527	141529	.	-	0	transcript_id "Ledus.C10G001300.t1"; gene_id "Ledus.C10G001300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7577.t1 is derived from g12248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4130897	4131757	.	-	.	Ledus.S5G035500
Ledus.S5	AUGUSTUS	transcript	4130897	4131757	.	-	.	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	stop_codon	4130894	4130896	.	-	0	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	CDS	4130897	4131044	0.98	-	1	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	exon	4130897	4131044	.	-	.	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	intron	4131045	4131123	.	-	.	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	CDS	4131124	4131340	1	-	2	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	exon	4131124	4131340	.	-	.	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	intron	4131341	4131422	.	-	.	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	CDS	4131423	4131540	1	-	0	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	exon	4131423	4131540	.	-	.	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	intron	4131541	4131634	.	-	.	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	CDS	4131635	4131757	0.77	-	0	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	exon	4131635	4131757	.	-	.	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
Ledus.S5	AUGUSTUS	start_codon	4131755	4131757	.	-	0	transcript_id "Ledus.S5G035500.t1"; gene_id "Ledus.S5G035500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3294.t1 is derived from g729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7341040	7342571	.	+	.	Ledus.S1G071500
Ledus.S1	AUGUSTUS	transcript	7341040	7342571	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	start_codon	7341040	7341042	.	+	0	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7341040	7341056	0.93	+	0	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7341040	7341056	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	intron	7341057	7341154	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7341155	7341274	0.64	+	1	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7341155	7341274	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	intron	7341275	7341634	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7341635	7341699	0.63	+	1	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7341635	7341699	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	intron	7341700	7341848	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7341849	7341870	0.51	+	2	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7341849	7341870	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	intron	7341871	7341969	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7341970	7342024	0.55	+	1	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7341970	7342024	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	intron	7342025	7342172	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7342173	7342230	1	+	0	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7342173	7342230	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	intron	7342231	7342367	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7342368	7342381	0.85	+	2	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7342368	7342381	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	intron	7342382	7342455	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7342456	7342471	0.99	+	0	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7342456	7342471	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	intron	7342472	7342569	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7342570	7342571	0.99	+	2	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7342570	7342571	.	+	.	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	stop_codon	7342572	7342574	.	+	0	transcript_id "Ledus.S1G071500.t1"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	transcript	7341040	7341871	.	+	.	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	start_codon	7341040	7341042	.	+	0	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7341040	7341056	0.98	+	0	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7341040	7341056	.	+	.	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	intron	7341057	7341154	.	+	.	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7341155	7341274	0.59	+	1	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7341155	7341274	.	+	.	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	intron	7341275	7341634	.	+	.	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7341635	7341699	0.57	+	1	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7341635	7341699	.	+	.	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	intron	7341700	7341848	.	+	.	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	CDS	7341849	7341871	0.36	+	2	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	exon	7341849	7341871	.	+	.	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
Ledus.S1	AUGUSTUS	stop_codon	7341872	7341874	.	+	0	transcript_id "Ledus.S1G071500.t2"; gene_id "Ledus.S1G071500"
# This transcript jg5613.t2 is derived from g3052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5614.t1 is derived from g3053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25397387	25400653	.	-	.	Ledus.S1G303500
Ledus.S1	AUGUSTUS	transcript	25397387	25400653	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	stop_codon	25397384	25397386	.	-	0	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25397387	25397453	1	-	1	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25397387	25397453	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25397454	25397549	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25397550	25397691	1	-	2	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25397550	25397691	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25397692	25397789	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25397790	25397883	1	-	0	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25397790	25397883	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25397884	25397969	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25397970	25398085	0.85	-	2	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25397970	25398085	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25398086	25398208	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25398209	25398263	1	-	0	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25398209	25398263	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25398264	25398361	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25398362	25398430	1	-	0	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25398362	25398430	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25398431	25398545	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25398546	25398645	1	-	1	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25398546	25398645	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25398646	25398807	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25398808	25398851	0.97	-	0	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25398808	25398851	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25398852	25398957	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25398958	25399120	0.5	-	1	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25398958	25399120	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25399121	25399223	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25399224	25399295	0.5	-	1	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25399224	25399295	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25399296	25399488	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25399489	25399569	1	-	1	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25399489	25399569	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25399570	25399694	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25399695	25399755	1	-	2	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25399695	25399755	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25399756	25399968	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25399969	25400653	0.97	-	0	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25399969	25400653	.	-	.	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	start_codon	25400651	25400653	.	-	0	transcript_id "Ledus.S1G303500.t1"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	transcript	25397387	25400653	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	stop_codon	25397384	25397386	.	-	0	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25397387	25397453	1	-	1	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25397387	25397453	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25397454	25397549	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25397550	25397691	1	-	2	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25397550	25397691	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25397692	25397789	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25397790	25397883	1	-	0	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25397790	25397883	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25397884	25397969	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25397970	25398085	0.67	-	2	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25397970	25398085	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25398086	25398208	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25398209	25398263	1	-	0	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25398209	25398263	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25398264	25398361	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25398362	25398430	1	-	0	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25398362	25398430	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25398431	25398545	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25398546	25398645	1	-	1	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25398546	25398645	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25398646	25398807	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25398808	25398851	0.99	-	0	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25398808	25398851	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25398852	25398957	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25398958	25399120	0.42	-	1	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25398958	25399120	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25399121	25399223	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25399224	25399295	0.38	-	1	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25399224	25399295	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25399296	25399478	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25399479	25399488	0.71	-	2	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25399479	25399488	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25399489	25399569	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25399570	25399613	0.7	-	1	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25399570	25399613	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25399614	25399694	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25399695	25399755	0.99	-	2	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25399695	25399755	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	intron	25399756	25399968	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	CDS	25399969	25400653	0.97	-	0	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	exon	25399969	25400653	.	-	.	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
Ledus.S1	AUGUSTUS	start_codon	25400651	25400653	.	-	0	transcript_id "Ledus.S1G303500.t2"; gene_id "Ledus.S1G303500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9718.t1 is derived from g10748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9374918	9375256	.	-	.	Ledus.S3G119500
Ledus.S3	AUGUSTUS	transcript	9374918	9375256	.	-	.	transcript_id "Ledus.S3G119500.t1"; gene_id "Ledus.S3G119500"
Ledus.S3	AUGUSTUS	stop_codon	9374915	9374917	.	-	0	transcript_id "Ledus.S3G119500.t1"; gene_id "Ledus.S3G119500"
Ledus.S3	AUGUSTUS	CDS	9374918	9375256	0.92	-	0	transcript_id "Ledus.S3G119500.t1"; gene_id "Ledus.S3G119500"
Ledus.S3	AUGUSTUS	exon	9374918	9375256	.	-	.	transcript_id "Ledus.S3G119500.t1"; gene_id "Ledus.S3G119500"
Ledus.S3	AUGUSTUS	start_codon	9375254	9375256	.	-	0	transcript_id "Ledus.S3G119500.t1"; gene_id "Ledus.S3G119500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8882.t1 is derived from g9912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2798326	2799745	.	+	.	Ledus.S3G035900
Ledus.S3	AUGUSTUS	transcript	2798326	2799745	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	start_codon	2798326	2798328	.	+	0	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	CDS	2798326	2798477	1	+	0	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	exon	2798326	2798477	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	intron	2798478	2798592	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	CDS	2798593	2798686	1	+	1	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	exon	2798593	2798686	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	intron	2798687	2798776	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	CDS	2798777	2798896	1	+	0	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	exon	2798777	2798896	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	intron	2798897	2799026	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	CDS	2799027	2799075	0.94	+	0	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	exon	2799027	2799075	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	intron	2799076	2799183	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	CDS	2799184	2799283	0.86	+	2	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	exon	2799184	2799283	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	intron	2799284	2799366	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	CDS	2799367	2799428	1	+	1	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	exon	2799367	2799428	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	intron	2799429	2799512	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	CDS	2799513	2799556	1	+	2	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	exon	2799513	2799556	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	intron	2799557	2799631	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	CDS	2799632	2799745	0.96	+	0	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	exon	2799632	2799745	.	+	.	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
Ledus.S3	AUGUSTUS	stop_codon	2799746	2799748	.	+	0	transcript_id "Ledus.S3G035900.t1"; gene_id "Ledus.S3G035900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2884.t1 is derived from g319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4394830	4395580	.	-	.	Ledus.S1G030500
Ledus.S1	AUGUSTUS	transcript	4394830	4395580	.	-	.	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	stop_codon	4394827	4394829	.	-	0	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	CDS	4394830	4394991	0.49	-	0	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	exon	4394830	4394991	.	-	.	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	intron	4394992	4395076	.	-	.	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	CDS	4395077	4395128	0.5	-	1	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	exon	4395077	4395128	.	-	.	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	intron	4395129	4395214	.	-	.	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	CDS	4395215	4395295	0.77	-	1	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	exon	4395215	4395295	.	-	.	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	intron	4395296	4395458	.	-	.	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	CDS	4395459	4395580	0.77	-	0	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	exon	4395459	4395580	.	-	.	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
Ledus.S1	AUGUSTUS	start_codon	4395578	4395580	.	-	0	transcript_id "Ledus.S1G030500.t1"; gene_id "Ledus.S1G030500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5443.t1 is derived from g2882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24318404	24318607	.	+	.	Ledus.S1G286400
Ledus.S1	AUGUSTUS	transcript	24318404	24318607	.	+	.	transcript_id "Ledus.S1G286400.t1"; gene_id "Ledus.S1G286400"
Ledus.S1	AUGUSTUS	start_codon	24318404	24318406	.	+	0	transcript_id "Ledus.S1G286400.t1"; gene_id "Ledus.S1G286400"
Ledus.S1	AUGUSTUS	CDS	24318404	24318607	0.37	+	0	transcript_id "Ledus.S1G286400.t1"; gene_id "Ledus.S1G286400"
Ledus.S1	AUGUSTUS	exon	24318404	24318607	.	+	.	transcript_id "Ledus.S1G286400.t1"; gene_id "Ledus.S1G286400"
Ledus.S1	AUGUSTUS	stop_codon	24318608	24318610	.	+	0	transcript_id "Ledus.S1G286400.t1"; gene_id "Ledus.S1G286400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10068.t1 is derived from g11098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12479688	12480451	.	+	.	Ledus.S3G154500
Ledus.S3	AUGUSTUS	transcript	12479688	12480451	.	+	.	transcript_id "Ledus.S3G154500.t1"; gene_id "Ledus.S3G154500"
Ledus.S3	AUGUSTUS	start_codon	12479688	12479690	.	+	0	transcript_id "Ledus.S3G154500.t1"; gene_id "Ledus.S3G154500"
Ledus.S3	AUGUSTUS	CDS	12479688	12479786	0.47	+	0	transcript_id "Ledus.S3G154500.t1"; gene_id "Ledus.S3G154500"
Ledus.S3	AUGUSTUS	exon	12479688	12479786	.	+	.	transcript_id "Ledus.S3G154500.t1"; gene_id "Ledus.S3G154500"
Ledus.S3	AUGUSTUS	intron	12479787	12480132	.	+	.	transcript_id "Ledus.S3G154500.t1"; gene_id "Ledus.S3G154500"
Ledus.S3	AUGUSTUS	CDS	12480133	12480236	1	+	0	transcript_id "Ledus.S3G154500.t1"; gene_id "Ledus.S3G154500"
Ledus.S3	AUGUSTUS	exon	12480133	12480236	.	+	.	transcript_id "Ledus.S3G154500.t1"; gene_id "Ledus.S3G154500"
Ledus.S3	AUGUSTUS	intron	12480237	12480405	.	+	.	transcript_id "Ledus.S3G154500.t1"; gene_id "Ledus.S3G154500"
Ledus.S3	AUGUSTUS	CDS	12480406	12480451	1	+	1	transcript_id "Ledus.S3G154500.t1"; gene_id "Ledus.S3G154500"
Ledus.S3	AUGUSTUS	exon	12480406	12480451	.	+	.	transcript_id "Ledus.S3G154500.t1"; gene_id "Ledus.S3G154500"
Ledus.S3	AUGUSTUS	stop_codon	12480452	12480454	.	+	0	transcript_id "Ledus.S3G154500.t1"; gene_id "Ledus.S3G154500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg362.t1 is derived from g7223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1942099	1942416	.	-	.	Ledus.S2G024400
Ledus.S2	AUGUSTUS	transcript	1942099	1942416	.	-	.	transcript_id "Ledus.S2G024400.t1"; gene_id "Ledus.S2G024400"
Ledus.S2	AUGUSTUS	stop_codon	1942096	1942098	.	-	0	transcript_id "Ledus.S2G024400.t1"; gene_id "Ledus.S2G024400"
Ledus.S2	AUGUSTUS	CDS	1942099	1942416	0.83	-	0	transcript_id "Ledus.S2G024400.t1"; gene_id "Ledus.S2G024400"
Ledus.S2	AUGUSTUS	exon	1942099	1942416	.	-	.	transcript_id "Ledus.S2G024400.t1"; gene_id "Ledus.S2G024400"
Ledus.S2	AUGUSTUS	start_codon	1942414	1942416	.	-	0	transcript_id "Ledus.S2G024400.t1"; gene_id "Ledus.S2G024400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4737.t1 is derived from g2175.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19427596	19430682	.	-	.	Ledus.S1G215800
Ledus.S1	AUGUSTUS	transcript	19427596	19430682	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	stop_codon	19427593	19427595	.	-	0	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19427596	19427907	1	-	0	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19427596	19427907	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19427908	19428007	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19428008	19428295	1	-	0	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19428008	19428295	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19428296	19428445	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19428446	19429012	1	-	0	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19428446	19429012	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19429013	19429239	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19429240	19429675	0.89	-	1	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19429240	19429675	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19429676	19429798	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19429799	19429884	1	-	0	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19429799	19429884	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19429885	19430079	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19430080	19430193	1	-	0	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19430080	19430193	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19430194	19430273	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19430274	19430478	1	-	1	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19430274	19430478	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19430479	19430593	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19430594	19430682	0.99	-	0	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19430594	19430682	.	-	.	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	start_codon	19430680	19430682	.	-	0	transcript_id "Ledus.S1G215800.t1"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	transcript	19427596	19430682	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	stop_codon	19427593	19427595	.	-	0	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19427596	19427907	1	-	0	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19427596	19427907	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19427908	19428007	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19428008	19428319	0.87	-	0	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19428008	19428319	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19428320	19428445	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19428446	19429012	0.96	-	0	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19428446	19429012	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19429013	19429239	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19429240	19429675	0.79	-	1	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19429240	19429675	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19429676	19429798	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19429799	19429884	1	-	0	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19429799	19429884	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19429885	19430079	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19430080	19430193	1	-	0	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19430080	19430193	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19430194	19430273	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19430274	19430478	1	-	1	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19430274	19430478	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	intron	19430479	19430593	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	CDS	19430594	19430682	0.99	-	0	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	exon	19430594	19430682	.	-	.	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
Ledus.S1	AUGUSTUS	start_codon	19430680	19430682	.	-	0	transcript_id "Ledus.S1G215800.t2"; gene_id "Ledus.S1G215800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5557.t1 is derived from g2996.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25114050	25118658	.	-	.	Ledus.S1G297800
Ledus.S1	AUGUSTUS	transcript	25114050	25118658	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	stop_codon	25114047	25114049	.	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25114050	25114197	1	-	1	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25114050	25114197	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25114198	25114276	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25114277	25114356	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25114277	25114356	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25114357	25114424	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25114425	25114478	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25114425	25114478	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25114479	25114566	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25114567	25114659	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25114567	25114659	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25114660	25114754	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25114755	25114853	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25114755	25114853	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25114854	25114953	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25114954	25115025	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25114954	25115025	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25115026	25115107	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25115108	25115197	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25115108	25115197	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25115198	25115330	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25115331	25115495	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25115331	25115495	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25115496	25115584	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25115585	25115675	1	-	1	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25115585	25115675	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25115676	25115794	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25115795	25115895	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25115795	25115895	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25115896	25116046	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25116047	25116100	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25116047	25116100	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25116101	25116236	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25116237	25116320	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25116237	25116320	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25116321	25116530	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25116531	25116577	0.99	-	2	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25116531	25116577	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25116578	25116688	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25116689	25116794	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25116689	25116794	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25116795	25116865	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25116866	25116961	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25116866	25116961	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25116962	25117074	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25117075	25117144	1	-	1	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25117075	25117144	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25117145	25117234	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25117235	25117320	0.91	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25117235	25117320	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25117321	25117437	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25117438	25117507	0.79	-	1	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25117438	25117507	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25117508	25117678	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25117679	25117758	1	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25117679	25117758	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25117759	25117851	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25117852	25117941	0.99	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25117852	25117941	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25117942	25118106	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25118107	25118142	0.99	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25118107	25118142	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25118143	25118322	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25118323	25118467	1	-	1	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25118323	25118467	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25118468	25118560	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25118561	25118658	0.66	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25118561	25118658	.	-	.	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	start_codon	25118656	25118658	.	-	0	transcript_id "Ledus.S1G297800.t1"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	transcript	25114050	25118658	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	stop_codon	25114047	25114049	.	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25114050	25114197	1	-	1	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25114050	25114197	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25114198	25114276	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25114277	25114356	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25114277	25114356	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25114357	25114424	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25114425	25114478	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25114425	25114478	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25114479	25114566	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25114567	25114659	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25114567	25114659	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25114660	25114754	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25114755	25114853	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25114755	25114853	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25114854	25114953	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25114954	25115025	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25114954	25115025	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25115026	25115107	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25115108	25115197	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25115108	25115197	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25115198	25115330	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25115331	25115495	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25115331	25115495	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25115496	25115584	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25115585	25115675	1	-	1	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25115585	25115675	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25115676	25115794	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25115795	25115895	0.99	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25115795	25115895	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25115896	25116046	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25116047	25116100	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25116047	25116100	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25116101	25116236	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25116237	25116320	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25116237	25116320	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25116321	25116530	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25116531	25116577	0.99	-	2	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25116531	25116577	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25116578	25116688	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25116689	25116794	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25116689	25116794	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25116795	25116865	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25116866	25116961	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25116866	25116961	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25116962	25117074	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25117075	25117144	1	-	1	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25117075	25117144	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25117145	25117234	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25117235	25117320	0.9	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25117235	25117320	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25117321	25117437	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25117438	25117507	0.85	-	1	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25117438	25117507	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25117508	25117678	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25117679	25117758	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25117679	25117758	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25117759	25117851	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25117852	25117941	1	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25117852	25117941	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25117942	25118062	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25118063	25118137	0.88	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25118063	25118137	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25118138	25118322	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25118323	25118467	1	-	1	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25118323	25118467	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	intron	25118468	25118560	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	CDS	25118561	25118658	0.54	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	exon	25118561	25118658	.	-	.	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
Ledus.S1	AUGUSTUS	start_codon	25118656	25118658	.	-	0	transcript_id "Ledus.S1G297800.t2"; gene_id "Ledus.S1G297800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5420.t1 is derived from g2859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24063637	24067135	.	-	.	Ledus.S1G284100
Ledus.S1	AUGUSTUS	transcript	24063637	24067135	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	stop_codon	24063634	24063636	.	-	0	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	CDS	24063637	24063859	1	-	1	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	exon	24063637	24063859	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	intron	24063860	24063941	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	CDS	24063942	24064051	1	-	0	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	exon	24063942	24064051	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	intron	24064052	24064151	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	CDS	24064152	24064289	1	-	0	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	exon	24064152	24064289	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	intron	24064290	24064364	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	CDS	24064365	24064445	1	-	0	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	exon	24064365	24064445	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	intron	24064446	24064523	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	CDS	24064524	24064766	0.99	-	0	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	exon	24064524	24064766	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	intron	24064767	24064849	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	CDS	24064850	24065161	1	-	0	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	exon	24064850	24065161	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	intron	24065162	24065349	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	CDS	24065350	24065451	1	-	0	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	exon	24065350	24065451	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	intron	24065452	24065539	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	CDS	24065540	24065717	1	-	1	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	exon	24065540	24065717	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	intron	24065718	24065802	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	CDS	24065803	24066146	0.92	-	0	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	exon	24065803	24066146	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	intron	24066147	24066223	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	CDS	24066224	24066374	0.98	-	1	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	exon	24066224	24066374	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	intron	24066375	24066500	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	CDS	24066501	24066603	0.88	-	2	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	exon	24066501	24066603	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	intron	24066604	24067047	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	CDS	24067048	24067135	0.9	-	0	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	exon	24067048	24067135	.	-	.	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
Ledus.S1	AUGUSTUS	start_codon	24067133	24067135	.	-	0	transcript_id "Ledus.S1G284100.t1"; gene_id "Ledus.S1G284100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5987.t1 is derived from g3430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28166551	28167120	.	+	.	Ledus.S1G340800
Ledus.S1	AUGUSTUS	transcript	28166551	28167120	.	+	.	transcript_id "Ledus.S1G340800.t1"; gene_id "Ledus.S1G340800"
Ledus.S1	AUGUSTUS	start_codon	28166551	28166553	.	+	0	transcript_id "Ledus.S1G340800.t1"; gene_id "Ledus.S1G340800"
Ledus.S1	AUGUSTUS	CDS	28166551	28166902	0.92	+	0	transcript_id "Ledus.S1G340800.t1"; gene_id "Ledus.S1G340800"
Ledus.S1	AUGUSTUS	exon	28166551	28166902	.	+	.	transcript_id "Ledus.S1G340800.t1"; gene_id "Ledus.S1G340800"
Ledus.S1	AUGUSTUS	intron	28166903	28167046	.	+	.	transcript_id "Ledus.S1G340800.t1"; gene_id "Ledus.S1G340800"
Ledus.S1	AUGUSTUS	CDS	28167047	28167120	0.98	+	2	transcript_id "Ledus.S1G340800.t1"; gene_id "Ledus.S1G340800"
Ledus.S1	AUGUSTUS	exon	28167047	28167120	.	+	.	transcript_id "Ledus.S1G340800.t1"; gene_id "Ledus.S1G340800"
Ledus.S1	AUGUSTUS	stop_codon	28167121	28167123	.	+	0	transcript_id "Ledus.S1G340800.t1"; gene_id "Ledus.S1G340800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5048.t1 is derived from g2487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21306249	21311547	.	+	.	Ledus.S1G246900
Ledus.S1	AUGUSTUS	transcript	21306249	21311547	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	start_codon	21306249	21306251	.	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21306249	21306416	0.61	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21306249	21306416	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21306417	21306673	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21306674	21306901	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21306674	21306901	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21306902	21307040	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21307041	21307071	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21307041	21307071	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21307072	21307157	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21307158	21307342	1	+	2	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21307158	21307342	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21307343	21307490	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21307491	21307650	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21307491	21307650	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21307651	21307713	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21307714	21307810	0.46	+	2	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21307714	21307810	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21307811	21307931	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21307932	21308104	0.97	+	1	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21307932	21308104	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21308105	21308205	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21308206	21308366	1	+	2	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21308206	21308366	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21308367	21308502	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21308503	21308712	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21308503	21308712	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21308713	21308811	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21308812	21308901	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21308812	21308901	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21308902	21308990	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21308991	21309071	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21308991	21309071	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21309072	21309171	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21309172	21309315	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21309172	21309315	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21309316	21309464	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21309465	21309547	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21309465	21309547	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21309548	21309696	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21309697	21309838	1	+	1	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21309697	21309838	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21309839	21309923	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21309924	21310007	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21309924	21310007	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21310008	21310090	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21310091	21310267	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21310091	21310267	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21310268	21310389	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21310390	21310480	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21310390	21310480	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21310481	21310580	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21310581	21310658	1	+	2	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21310581	21310658	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21310659	21310750	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21310751	21310817	1	+	2	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21310751	21310817	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21310818	21310891	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21310892	21310994	1	+	1	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21310892	21310994	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21310995	21311087	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21311088	21311204	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21311088	21311204	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21311205	21311281	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21311282	21311338	1	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21311282	21311338	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	intron	21311339	21311424	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	CDS	21311425	21311547	0.91	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	exon	21311425	21311547	.	+	.	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
Ledus.S1	AUGUSTUS	stop_codon	21311548	21311550	.	+	0	transcript_id "Ledus.S1G246900.t1"; gene_id "Ledus.S1G246900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4200.t1 is derived from g1636.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15346271	15347710	.	-	.	Ledus.S1G162100
Ledus.S1	AUGUSTUS	transcript	15346271	15347710	.	-	.	transcript_id "Ledus.S1G162100.t1"; gene_id "Ledus.S1G162100"
Ledus.S1	AUGUSTUS	stop_codon	15346268	15346270	.	-	0	transcript_id "Ledus.S1G162100.t1"; gene_id "Ledus.S1G162100"
Ledus.S1	AUGUSTUS	CDS	15346271	15347710	0.37	-	0	transcript_id "Ledus.S1G162100.t1"; gene_id "Ledus.S1G162100"
Ledus.S1	AUGUSTUS	exon	15346271	15347710	.	-	.	transcript_id "Ledus.S1G162100.t1"; gene_id "Ledus.S1G162100"
Ledus.S1	AUGUSTUS	start_codon	15347708	15347710	.	-	0	transcript_id "Ledus.S1G162100.t1"; gene_id "Ledus.S1G162100"
# This transcript jg3821.t2 is derived from g1257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3822.t1 is derived from g1258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12751015	12753884	.	-	.	Ledus.S1G124300
Ledus.S1	AUGUSTUS	transcript	12751015	12753884	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	stop_codon	12751012	12751014	.	-	0	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12751015	12751845	1	-	0	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12751015	12751845	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12751846	12751919	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12751920	12752063	1	-	0	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12751920	12752063	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12752064	12752156	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12752157	12752358	1	-	1	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12752157	12752358	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12752359	12752466	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12752467	12752495	0.99	-	0	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12752467	12752495	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12752496	12752621	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12752622	12752690	1	-	0	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12752622	12752690	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12752691	12752864	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12752865	12752926	1	-	2	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12752865	12752926	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12752927	12753031	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12753032	12753106	1	-	2	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12753032	12753106	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12753107	12753461	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12753462	12753534	1	-	0	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12753462	12753534	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12753535	12753761	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12753762	12753884	0.98	-	0	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12753762	12753884	.	-	.	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	start_codon	12753882	12753884	.	-	0	transcript_id "Ledus.S1G124300.t1"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	transcript	12751015	12753884	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	stop_codon	12751012	12751014	.	-	0	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12751015	12751848	1	-	0	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12751015	12751848	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12751849	12751919	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12751920	12752063	1	-	0	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12751920	12752063	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12752064	12752156	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12752157	12752358	1	-	1	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12752157	12752358	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12752359	12752466	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12752467	12752495	0.98	-	0	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12752467	12752495	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12752496	12752621	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12752622	12752690	1	-	0	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12752622	12752690	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12752691	12752864	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12752865	12752926	1	-	2	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12752865	12752926	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12752927	12753031	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12753032	12753106	1	-	2	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12753032	12753106	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12753107	12753461	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12753462	12753534	1	-	0	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12753462	12753534	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	intron	12753535	12753761	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	CDS	12753762	12753884	0.98	-	0	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	exon	12753762	12753884	.	-	.	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
Ledus.S1	AUGUSTUS	start_codon	12753882	12753884	.	-	0	transcript_id "Ledus.S1G124300.t2"; gene_id "Ledus.S1G124300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5797.t1 is derived from g3239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26961370	26961585	.	+	.	Ledus.S1G321800
Ledus.S1	AUGUSTUS	transcript	26961370	26961585	.	+	.	transcript_id "Ledus.S1G321800.t1"; gene_id "Ledus.S1G321800"
Ledus.S1	AUGUSTUS	start_codon	26961370	26961372	.	+	0	transcript_id "Ledus.S1G321800.t1"; gene_id "Ledus.S1G321800"
Ledus.S1	AUGUSTUS	CDS	26961370	26961585	0.49	+	0	transcript_id "Ledus.S1G321800.t1"; gene_id "Ledus.S1G321800"
Ledus.S1	AUGUSTUS	exon	26961370	26961585	.	+	.	transcript_id "Ledus.S1G321800.t1"; gene_id "Ledus.S1G321800"
Ledus.S1	AUGUSTUS	stop_codon	26961586	26961588	.	+	0	transcript_id "Ledus.S1G321800.t1"; gene_id "Ledus.S1G321800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9117.t1 is derived from g10147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4671563	4673470	.	+	.	Ledus.S3G059400
Ledus.S3	AUGUSTUS	transcript	4671563	4673470	.	+	.	transcript_id "Ledus.S3G059400.t1"; gene_id "Ledus.S3G059400"
Ledus.S3	AUGUSTUS	start_codon	4671563	4671565	.	+	0	transcript_id "Ledus.S3G059400.t1"; gene_id "Ledus.S3G059400"
Ledus.S3	AUGUSTUS	CDS	4671563	4673470	1	+	0	transcript_id "Ledus.S3G059400.t1"; gene_id "Ledus.S3G059400"
Ledus.S3	AUGUSTUS	exon	4671563	4673470	.	+	.	transcript_id "Ledus.S3G059400.t1"; gene_id "Ledus.S3G059400"
Ledus.S3	AUGUSTUS	stop_codon	4673471	4673473	.	+	0	transcript_id "Ledus.S3G059400.t1"; gene_id "Ledus.S3G059400"
# This transcript jg7356.t2 is derived from g12027.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7356.t3 is derived from g12027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7357.t1 is derived from g12028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1438326	1440156	.	-	.	Ledus.S5G013500
Ledus.S5	AUGUSTUS	transcript	1438326	1440156	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	stop_codon	1438323	1438325	.	-	0	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	CDS	1438326	1438350	0.53	-	1	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	exon	1438326	1438350	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	intron	1438351	1438480	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	CDS	1438481	1438513	0.53	-	1	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	exon	1438481	1438513	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	intron	1438514	1438584	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	CDS	1438585	1438628	0.45	-	0	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	exon	1438585	1438628	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	intron	1438629	1438744	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	CDS	1438745	1438835	0.99	-	1	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	exon	1438745	1438835	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	intron	1438836	1439150	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	CDS	1439151	1439262	1	-	2	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	exon	1439151	1439262	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	intron	1439263	1439421	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	CDS	1439422	1439510	1	-	1	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	exon	1439422	1439510	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	intron	1439511	1439745	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	CDS	1439746	1439816	1	-	0	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	exon	1439746	1439816	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	intron	1439817	1440012	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	CDS	1440013	1440156	0.97	-	0	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	exon	1440013	1440156	.	-	.	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
Ledus.S5	AUGUSTUS	start_codon	1440154	1440156	.	-	0	transcript_id "Ledus.S5G013500.t1"; gene_id "Ledus.S5G013500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12622.t1 is derived from g6244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13260951	13261743	.	+	.	Ledus.S4G177800
Ledus.S4	AUGUSTUS	transcript	13260951	13261743	.	+	.	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	start_codon	13260951	13260953	.	+	0	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	CDS	13260951	13261087	0.87	+	0	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	exon	13260951	13261087	.	+	.	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	intron	13261088	13261162	.	+	.	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	CDS	13261163	13261314	1	+	1	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	exon	13261163	13261314	.	+	.	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	intron	13261315	13261439	.	+	.	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	CDS	13261440	13261501	1	+	2	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	exon	13261440	13261501	.	+	.	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	intron	13261502	13261587	.	+	.	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	CDS	13261588	13261743	1	+	0	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	exon	13261588	13261743	.	+	.	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
Ledus.S4	AUGUSTUS	stop_codon	13261744	13261746	.	+	0	transcript_id "Ledus.S4G177800.t1"; gene_id "Ledus.S4G177800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2992.t1 is derived from g427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5190276	5191386	.	-	.	Ledus.S1G041300
Ledus.S1	AUGUSTUS	transcript	5190276	5191386	.	-	.	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	stop_codon	5190273	5190275	.	-	0	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	CDS	5190276	5190374	0.36	-	0	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	exon	5190276	5190374	.	-	.	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	intron	5190375	5190493	.	-	.	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	CDS	5190494	5190743	0.22	-	1	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	exon	5190494	5190743	.	-	.	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	intron	5190744	5190877	.	-	.	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	CDS	5190878	5190969	0.33	-	0	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	exon	5190878	5190969	.	-	.	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	intron	5190970	5191051	.	-	.	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	CDS	5191052	5191100	0.36	-	1	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	exon	5191052	5191100	.	-	.	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	intron	5191101	5191381	.	-	.	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	CDS	5191382	5191386	0.54	-	0	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	exon	5191382	5191386	.	-	.	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
Ledus.S1	AUGUSTUS	start_codon	5191384	5191386	.	-	0	transcript_id "Ledus.S1G041300.t1"; gene_id "Ledus.S1G041300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3078.t1 is derived from g513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5745122	5753536	.	+	.	Ledus.S1G049900
Ledus.S1	AUGUSTUS	transcript	5745122	5753536	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	start_codon	5745122	5745124	.	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5745122	5745177	0.69	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5745122	5745177	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5745178	5745272	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5745273	5745384	1	+	1	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5745273	5745384	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5745385	5745529	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5745530	5745592	1	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5745530	5745592	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5745593	5745675	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5745676	5745753	1	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5745676	5745753	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5745754	5745939	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5745940	5746031	1	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5745940	5746031	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5746032	5746171	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5746172	5746274	1	+	1	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5746172	5746274	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5746275	5746439	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5746440	5746592	1	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5746440	5746592	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5746593	5746685	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5746686	5746873	0.92	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5746686	5746873	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5746874	5746952	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5746953	5747100	0.85	+	1	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5746953	5747100	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5747101	5747173	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5747174	5747370	0.92	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5747174	5747370	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5747371	5747478	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5747479	5748001	0.71	+	1	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5747479	5748001	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5748002	5748169	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5748170	5748675	1	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5748170	5748675	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5748676	5748872	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5748873	5749746	0.48	+	1	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5748873	5749746	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5749747	5749943	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5749944	5750691	0.88	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5749944	5750691	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5750692	5750797	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5750798	5751906	0.98	+	2	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5750798	5751906	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5751907	5752078	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5752079	5752534	1	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5752079	5752534	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5752535	5752622	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5752623	5752853	1	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5752623	5752853	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5752854	5752944	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5752945	5753120	0.71	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5752945	5753120	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	intron	5753121	5753382	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	CDS	5753383	5753536	0.81	+	1	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	exon	5753383	5753536	.	+	.	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
Ledus.S1	AUGUSTUS	stop_codon	5753537	5753539	.	+	0	transcript_id "Ledus.S1G049900.t1"; gene_id "Ledus.S1G049900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3379.t1 is derived from g814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7961089	7962240	.	-	.	Ledus.S1G080000
Ledus.S1	AUGUSTUS	transcript	7961089	7962240	.	-	.	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	stop_codon	7961086	7961088	.	-	0	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	CDS	7961089	7961256	1	-	0	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	exon	7961089	7961256	.	-	.	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	intron	7961257	7961353	.	-	.	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	CDS	7961354	7961444	1	-	1	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	exon	7961354	7961444	.	-	.	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	intron	7961445	7961522	.	-	.	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	CDS	7961523	7961599	1	-	0	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	exon	7961523	7961599	.	-	.	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	intron	7961600	7962168	.	-	.	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	CDS	7962169	7962240	0.85	-	0	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	exon	7962169	7962240	.	-	.	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
Ledus.S1	AUGUSTUS	start_codon	7962238	7962240	.	-	0	transcript_id "Ledus.S1G080000.t1"; gene_id "Ledus.S1G080000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6215.t1 is derived from g3658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29690558	29692020	.	-	.	Ledus.S1G363600
Ledus.S1	AUGUSTUS	transcript	29690558	29692020	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	stop_codon	29690555	29690557	.	-	0	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	CDS	29690558	29690618	0.86	-	1	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	exon	29690558	29690618	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	intron	29690619	29690743	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	CDS	29690744	29690910	1	-	0	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	exon	29690744	29690910	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	intron	29690911	29691003	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	CDS	29691004	29691120	0.94	-	0	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	exon	29691004	29691120	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	intron	29691121	29691230	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	CDS	29691231	29691297	0.94	-	1	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	exon	29691231	29691297	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	intron	29691298	29691430	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	CDS	29691431	29691511	1	-	1	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	exon	29691431	29691511	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	intron	29691512	29691659	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	CDS	29691660	29691740	1	-	1	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	exon	29691660	29691740	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	intron	29691741	29691940	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	CDS	29691941	29692020	1	-	0	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	exon	29691941	29692020	.	-	.	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
Ledus.S1	AUGUSTUS	start_codon	29692018	29692020	.	-	0	transcript_id "Ledus.S1G363600.t1"; gene_id "Ledus.S1G363600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5047.t1 is derived from g2486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21303227	21305895	.	-	.	Ledus.S1G246800
Ledus.S1	AUGUSTUS	transcript	21303227	21305895	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	stop_codon	21303224	21303226	.	-	0	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	CDS	21303227	21303299	0.65	-	1	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	exon	21303227	21303299	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	intron	21303300	21303415	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	CDS	21303416	21303462	0.65	-	0	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	exon	21303416	21303462	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	intron	21303463	21303638	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	CDS	21303639	21303671	1	-	0	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	exon	21303639	21303671	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	intron	21303672	21303769	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	CDS	21303770	21303824	1	-	1	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	exon	21303770	21303824	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	intron	21303825	21304023	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	CDS	21304024	21304140	1	-	1	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	exon	21304024	21304140	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	intron	21304141	21304246	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	CDS	21304247	21304300	1	-	1	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	exon	21304247	21304300	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	intron	21304301	21304433	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	CDS	21304434	21304513	1	-	0	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	exon	21304434	21304513	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	intron	21304514	21304610	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	CDS	21304611	21304721	1	-	0	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	exon	21304611	21304721	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	intron	21304722	21304907	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	CDS	21304908	21305010	1	-	1	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	exon	21304908	21305010	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	intron	21305011	21305137	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	CDS	21305138	21305266	1	-	1	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	exon	21305138	21305266	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	intron	21305267	21305437	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	CDS	21305438	21305895	0.94	-	0	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	exon	21305438	21305895	.	-	.	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
Ledus.S1	AUGUSTUS	start_codon	21305893	21305895	.	-	0	transcript_id "Ledus.S1G246800.t1"; gene_id "Ledus.S1G246800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4942.t1 is derived from g2380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20813696	20815738	.	-	.	Ledus.S1G236300
Ledus.S1	AUGUSTUS	transcript	20813696	20815738	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	stop_codon	20813693	20813695	.	-	0	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	CDS	20813696	20813737	1	-	0	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	exon	20813696	20813737	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	intron	20813738	20813820	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	CDS	20813821	20813940	1	-	0	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	exon	20813821	20813940	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	intron	20813941	20814090	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	CDS	20814091	20814192	1	-	0	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	exon	20814091	20814192	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	intron	20814193	20814326	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	CDS	20814327	20814483	1	-	1	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	exon	20814327	20814483	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	intron	20814484	20814574	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	CDS	20814575	20814693	1	-	0	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	exon	20814575	20814693	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	intron	20814694	20814799	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	CDS	20814800	20815023	1	-	2	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	exon	20814800	20815023	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	intron	20815024	20815153	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	CDS	20815154	20815431	1	-	1	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	exon	20815154	20815431	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	intron	20815432	20815521	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	CDS	20815522	20815604	0.69	-	0	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	exon	20815522	20815604	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	intron	20815605	20815693	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	CDS	20815694	20815738	0.26	-	0	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	exon	20815694	20815738	.	-	.	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
Ledus.S1	AUGUSTUS	start_codon	20815736	20815738	.	-	0	transcript_id "Ledus.S1G236300.t1"; gene_id "Ledus.S1G236300"
# This transcript jg6376.t2 is derived from g3819.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6377.t1 is derived from g3820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30905019	30906515	.	-	.	Ledus.S1G379800
Ledus.S1	AUGUSTUS	transcript	30905019	30906515	.	-	.	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	stop_codon	30905016	30905018	.	-	0	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	CDS	30905019	30905242	0.95	-	2	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	exon	30905019	30905242	.	-	.	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	intron	30905243	30905353	.	-	.	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	CDS	30905354	30906205	0.76	-	2	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	exon	30905354	30906205	.	-	.	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	intron	30906206	30906285	.	-	.	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	CDS	30906286	30906324	0.62	-	2	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	exon	30906286	30906324	.	-	.	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	intron	30906325	30906409	.	-	.	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	CDS	30906410	30906515	0.34	-	0	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	exon	30906410	30906515	.	-	.	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
Ledus.S1	AUGUSTUS	start_codon	30906513	30906515	.	-	0	transcript_id "Ledus.S1G379800.t1"; gene_id "Ledus.S1G379800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5031.t1 is derived from g2470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21212215	21212981	.	-	.	Ledus.S1G245200
Ledus.S1	AUGUSTUS	transcript	21212215	21212981	.	-	.	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	stop_codon	21212212	21212214	.	-	0	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	CDS	21212215	21212309	0.88	-	2	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	exon	21212215	21212309	.	-	.	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	intron	21212310	21212397	.	-	.	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	CDS	21212398	21212440	1	-	0	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	exon	21212398	21212440	.	-	.	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	intron	21212441	21212536	.	-	.	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	CDS	21212537	21212601	1	-	2	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	exon	21212537	21212601	.	-	.	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	intron	21212602	21212698	.	-	.	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	CDS	21212699	21212981	0.54	-	0	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	exon	21212699	21212981	.	-	.	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
Ledus.S1	AUGUSTUS	start_codon	21212979	21212981	.	-	0	transcript_id "Ledus.S1G245200.t1"; gene_id "Ledus.S1G245200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8216.t1 is derived from g12887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9953939	9954760	.	+	.	Ledus.S5G099400
Ledus.S5	AUGUSTUS	transcript	9953939	9954760	.	+	.	transcript_id "Ledus.S5G099400.t1"; gene_id "Ledus.S5G099400"
Ledus.S5	AUGUSTUS	start_codon	9953939	9953941	.	+	0	transcript_id "Ledus.S5G099400.t1"; gene_id "Ledus.S5G099400"
Ledus.S5	AUGUSTUS	CDS	9953939	9954061	0.48	+	0	transcript_id "Ledus.S5G099400.t1"; gene_id "Ledus.S5G099400"
Ledus.S5	AUGUSTUS	exon	9953939	9954061	.	+	.	transcript_id "Ledus.S5G099400.t1"; gene_id "Ledus.S5G099400"
Ledus.S5	AUGUSTUS	intron	9954062	9954262	.	+	.	transcript_id "Ledus.S5G099400.t1"; gene_id "Ledus.S5G099400"
Ledus.S5	AUGUSTUS	CDS	9954263	9954760	0.52	+	0	transcript_id "Ledus.S5G099400.t1"; gene_id "Ledus.S5G099400"
Ledus.S5	AUGUSTUS	exon	9954263	9954760	.	+	.	transcript_id "Ledus.S5G099400.t1"; gene_id "Ledus.S5G099400"
Ledus.S5	AUGUSTUS	stop_codon	9954761	9954763	.	+	0	transcript_id "Ledus.S5G099400.t1"; gene_id "Ledus.S5G099400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1074.t1 is derived from g7935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7282480	7284487	.	+	.	Ledus.S2G095600
Ledus.S2	AUGUSTUS	transcript	7282480	7284487	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	start_codon	7282480	7282482	.	+	0	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	CDS	7282480	7282832	0.99	+	0	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	exon	7282480	7282832	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	intron	7282833	7282903	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	CDS	7282904	7283043	1	+	1	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	exon	7282904	7283043	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	intron	7283044	7283137	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	CDS	7283138	7283173	1	+	2	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	exon	7283138	7283173	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	intron	7283174	7283265	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	CDS	7283266	7283361	1	+	2	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	exon	7283266	7283361	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	intron	7283362	7283451	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	CDS	7283452	7283531	1	+	2	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	exon	7283452	7283531	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	intron	7283532	7283624	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	CDS	7283625	7283714	1	+	0	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	exon	7283625	7283714	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	intron	7283715	7283803	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	CDS	7283804	7283836	1	+	0	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	exon	7283804	7283836	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	intron	7283837	7283922	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	CDS	7283923	7284082	0.99	+	0	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	exon	7283923	7284082	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	intron	7284083	7284183	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	CDS	7284184	7284241	1	+	2	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	exon	7284184	7284241	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	intron	7284242	7284348	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	CDS	7284349	7284487	0.93	+	1	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	exon	7284349	7284487	.	+	.	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
Ledus.S2	AUGUSTUS	stop_codon	7284488	7284490	.	+	0	transcript_id "Ledus.S2G095600.t1"; gene_id "Ledus.S2G095600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3270.t1 is derived from g705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7196233	7196976	.	+	.	Ledus.S1G069100
Ledus.S1	AUGUSTUS	transcript	7196233	7196976	.	+	.	transcript_id "Ledus.S1G069100.t1"; gene_id "Ledus.S1G069100"
Ledus.S1	AUGUSTUS	start_codon	7196233	7196235	.	+	0	transcript_id "Ledus.S1G069100.t1"; gene_id "Ledus.S1G069100"
Ledus.S1	AUGUSTUS	CDS	7196233	7196976	0.95	+	0	transcript_id "Ledus.S1G069100.t1"; gene_id "Ledus.S1G069100"
Ledus.S1	AUGUSTUS	exon	7196233	7196976	.	+	.	transcript_id "Ledus.S1G069100.t1"; gene_id "Ledus.S1G069100"
Ledus.S1	AUGUSTUS	stop_codon	7196977	7196979	.	+	0	transcript_id "Ledus.S1G069100.t1"; gene_id "Ledus.S1G069100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10199.t1 is derived from g11229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13526770	13531803	.	-	.	Ledus.S3G167600
Ledus.S3	AUGUSTUS	transcript	13526770	13531803	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	stop_codon	13526767	13526769	.	-	0	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13526770	13526932	1	-	1	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13526770	13526932	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13526933	13527016	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13527017	13527144	0.97	-	0	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13527017	13527144	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13527145	13527249	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13527250	13527539	0.85	-	2	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13527250	13527539	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13527540	13527620	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13527621	13527769	1	-	1	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13527621	13527769	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13527770	13527851	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13527852	13528158	1	-	2	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13527852	13528158	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13528159	13528327	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13528328	13528509	1	-	1	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13528328	13528509	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13528510	13528607	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13528608	13528904	1	-	1	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13528608	13528904	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13528905	13528998	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13528999	13529846	1	-	0	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13528999	13529846	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13529847	13530006	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13530007	13530080	0.93	-	2	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13530007	13530080	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13530081	13530192	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13530193	13530227	0.99	-	1	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13530193	13530227	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13530228	13530305	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13530306	13530440	1	-	1	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13530306	13530440	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13530441	13530523	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13530524	13530587	1	-	2	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13530524	13530587	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13530588	13530738	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13530739	13531020	0.99	-	2	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13530739	13531020	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13531021	13531164	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13531165	13531235	1	-	1	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13531165	13531235	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	intron	13531236	13531330	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	CDS	13531331	13531803	0.63	-	0	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	exon	13531331	13531803	.	-	.	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
Ledus.S3	AUGUSTUS	start_codon	13531801	13531803	.	-	0	transcript_id "Ledus.S3G167600.t1"; gene_id "Ledus.S3G167600"
# This transcript jg3164.t2 is derived from g599.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3165.t1 is derived from g600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6472206	6473144	.	+	.	Ledus.S1G058600
Ledus.S1	AUGUSTUS	transcript	6472206	6473144	.	+	.	transcript_id "Ledus.S1G058600.t1"; gene_id "Ledus.S1G058600"
Ledus.S1	AUGUSTUS	start_codon	6472206	6472208	.	+	0	transcript_id "Ledus.S1G058600.t1"; gene_id "Ledus.S1G058600"
Ledus.S1	AUGUSTUS	CDS	6472206	6473144	0.83	+	0	transcript_id "Ledus.S1G058600.t1"; gene_id "Ledus.S1G058600"
Ledus.S1	AUGUSTUS	exon	6472206	6473144	.	+	.	transcript_id "Ledus.S1G058600.t1"; gene_id "Ledus.S1G058600"
Ledus.S1	AUGUSTUS	stop_codon	6473145	6473147	.	+	0	transcript_id "Ledus.S1G058600.t1"; gene_id "Ledus.S1G058600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12306.t1 is derived from g5927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11133878	11137636	.	+	.	Ledus.S4G146200
Ledus.S4	AUGUSTUS	transcript	11133878	11137636	.	+	.	transcript_id "Ledus.S4G146200.t1"; gene_id "Ledus.S4G146200"
Ledus.S4	AUGUSTUS	start_codon	11133878	11133880	.	+	0	transcript_id "Ledus.S4G146200.t1"; gene_id "Ledus.S4G146200"
Ledus.S4	AUGUSTUS	CDS	11133878	11134836	0.95	+	0	transcript_id "Ledus.S4G146200.t1"; gene_id "Ledus.S4G146200"
Ledus.S4	AUGUSTUS	exon	11133878	11134836	.	+	.	transcript_id "Ledus.S4G146200.t1"; gene_id "Ledus.S4G146200"
Ledus.S4	AUGUSTUS	intron	11134837	11134972	.	+	.	transcript_id "Ledus.S4G146200.t1"; gene_id "Ledus.S4G146200"
Ledus.S4	AUGUSTUS	CDS	11134973	11135777	1	+	1	transcript_id "Ledus.S4G146200.t1"; gene_id "Ledus.S4G146200"
Ledus.S4	AUGUSTUS	exon	11134973	11135777	.	+	.	transcript_id "Ledus.S4G146200.t1"; gene_id "Ledus.S4G146200"
Ledus.S4	AUGUSTUS	intron	11135778	11135884	.	+	.	transcript_id "Ledus.S4G146200.t1"; gene_id "Ledus.S4G146200"
Ledus.S4	AUGUSTUS	CDS	11135885	11137636	0.94	+	0	transcript_id "Ledus.S4G146200.t1"; gene_id "Ledus.S4G146200"
Ledus.S4	AUGUSTUS	exon	11135885	11137636	.	+	.	transcript_id "Ledus.S4G146200.t1"; gene_id "Ledus.S4G146200"
Ledus.S4	AUGUSTUS	stop_codon	11137637	11137639	.	+	0	transcript_id "Ledus.S4G146200.t1"; gene_id "Ledus.S4G146200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11128.t1 is derived from g4746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2084547	2086124	.	+	.	Ledus.S4G028400
Ledus.S4	AUGUSTUS	transcript	2084547	2086124	.	+	.	transcript_id "Ledus.S4G028400.t1"; gene_id "Ledus.S4G028400"
Ledus.S4	AUGUSTUS	start_codon	2084547	2084549	.	+	0	transcript_id "Ledus.S4G028400.t1"; gene_id "Ledus.S4G028400"
Ledus.S4	AUGUSTUS	CDS	2084547	2086124	0.74	+	0	transcript_id "Ledus.S4G028400.t1"; gene_id "Ledus.S4G028400"
Ledus.S4	AUGUSTUS	exon	2084547	2086124	.	+	.	transcript_id "Ledus.S4G028400.t1"; gene_id "Ledus.S4G028400"
Ledus.S4	AUGUSTUS	stop_codon	2086125	2086127	.	+	0	transcript_id "Ledus.S4G028400.t1"; gene_id "Ledus.S4G028400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7887.t1 is derived from g12558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7655861	7662098	.	+	.	Ledus.S5G066500
Ledus.S5	AUGUSTUS	transcript	7655861	7662098	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	start_codon	7655861	7655863	.	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7655861	7655887	0.88	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7655861	7655887	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7655888	7655977	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7655978	7656004	0.71	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7655978	7656004	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7656005	7656142	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7656143	7657117	0.76	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7656143	7657117	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7657118	7657258	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7657259	7657321	1	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7657259	7657321	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7657322	7657576	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7657577	7657656	1	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7657577	7657656	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7657657	7657788	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7657789	7657921	1	+	1	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7657789	7657921	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7657922	7658140	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7658141	7658215	1	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7658141	7658215	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7658216	7658448	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7658449	7658605	1	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7658449	7658605	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7658606	7658804	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7658805	7658893	1	+	2	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7658805	7658893	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7658894	7658983	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7658984	7659240	0.99	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7658984	7659240	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7659241	7659380	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7659381	7659552	0.82	+	1	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7659381	7659552	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7659553	7659671	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7659672	7659755	1	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7659672	7659755	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7659756	7659910	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7659911	7660368	0.99	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7659911	7660368	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7660369	7660542	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7660543	7660696	1	+	1	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7660543	7660696	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7660697	7660795	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7660796	7660877	1	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7660796	7660877	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7660878	7660961	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7660962	7661041	1	+	2	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7660962	7661041	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7661042	7661288	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7661289	7661450	1	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7661289	7661450	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7661451	7661583	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7661584	7661651	1	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7661584	7661651	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7661652	7661789	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7661790	7661870	0.86	+	1	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7661790	7661870	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	intron	7661871	7661983	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	CDS	7661984	7662098	0.83	+	1	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	exon	7661984	7662098	.	+	.	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
Ledus.S5	AUGUSTUS	stop_codon	7662099	7662101	.	+	0	transcript_id "Ledus.S5G066500.t1"; gene_id "Ledus.S5G066500"
# This transcript jg1753.t2 is derived from g8615.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1754.t1 is derived from g8616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12342089	12343446	.	-	.	Ledus.S2G163600
Ledus.S2	AUGUSTUS	transcript	12342089	12343446	.	-	.	transcript_id "Ledus.S2G163600.t1"; gene_id "Ledus.S2G163600"
Ledus.S2	AUGUSTUS	stop_codon	12342086	12342088	.	-	0	transcript_id "Ledus.S2G163600.t1"; gene_id "Ledus.S2G163600"
Ledus.S2	AUGUSTUS	CDS	12342089	12342247	1	-	0	transcript_id "Ledus.S2G163600.t1"; gene_id "Ledus.S2G163600"
Ledus.S2	AUGUSTUS	exon	12342089	12342247	.	-	.	transcript_id "Ledus.S2G163600.t1"; gene_id "Ledus.S2G163600"
Ledus.S2	AUGUSTUS	intron	12342248	12342351	.	-	.	transcript_id "Ledus.S2G163600.t1"; gene_id "Ledus.S2G163600"
Ledus.S2	AUGUSTUS	CDS	12342352	12342601	1	-	1	transcript_id "Ledus.S2G163600.t1"; gene_id "Ledus.S2G163600"
Ledus.S2	AUGUSTUS	exon	12342352	12342601	.	-	.	transcript_id "Ledus.S2G163600.t1"; gene_id "Ledus.S2G163600"
Ledus.S2	AUGUSTUS	intron	12342602	12342670	.	-	.	transcript_id "Ledus.S2G163600.t1"; gene_id "Ledus.S2G163600"
Ledus.S2	AUGUSTUS	CDS	12342671	12343446	0.9	-	0	transcript_id "Ledus.S2G163600.t1"; gene_id "Ledus.S2G163600"
Ledus.S2	AUGUSTUS	exon	12342671	12343446	.	-	.	transcript_id "Ledus.S2G163600.t1"; gene_id "Ledus.S2G163600"
Ledus.S2	AUGUSTUS	start_codon	12343444	12343446	.	-	0	transcript_id "Ledus.S2G163600.t1"; gene_id "Ledus.S2G163600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6704.t1 is derived from g4147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33420767	33421769	.	+	.	Ledus.S1G412500
Ledus.S1	AUGUSTUS	transcript	33420767	33421769	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	start_codon	33420767	33420769	.	+	0	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	CDS	33420767	33420869	0.76	+	0	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	exon	33420767	33420869	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	intron	33420870	33420963	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	CDS	33420964	33421054	1	+	2	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	exon	33420964	33421054	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	intron	33421055	33421143	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	CDS	33421144	33421195	1	+	1	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	exon	33421144	33421195	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	intron	33421196	33421267	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	CDS	33421268	33421342	1	+	0	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	exon	33421268	33421342	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	intron	33421343	33421417	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	CDS	33421418	33421480	1	+	0	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	exon	33421418	33421480	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	intron	33421481	33421558	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	CDS	33421559	33421615	1	+	0	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	exon	33421559	33421615	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	intron	33421616	33421697	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	CDS	33421698	33421769	1	+	0	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	exon	33421698	33421769	.	+	.	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
Ledus.S1	AUGUSTUS	stop_codon	33421770	33421772	.	+	0	transcript_id "Ledus.S1G412500.t1"; gene_id "Ledus.S1G412500"
# This transcript jg7879.t2 is derived from g12550.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7880.t1 is derived from g12551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7598466	7600914	.	+	.	Ledus.S5G065800
Ledus.S5	AUGUSTUS	transcript	7598466	7600914	.	+	.	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	start_codon	7598466	7598468	.	+	0	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	CDS	7598466	7599381	0.85	+	0	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	exon	7598466	7599381	.	+	.	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	intron	7599382	7599654	.	+	.	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	CDS	7599655	7599857	1	+	2	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	exon	7599655	7599857	.	+	.	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	intron	7599858	7600002	.	+	.	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	CDS	7600003	7600161	1	+	0	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	exon	7600003	7600161	.	+	.	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	intron	7600162	7600470	.	+	.	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	CDS	7600471	7600914	0.98	+	0	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	exon	7600471	7600914	.	+	.	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
Ledus.S5	AUGUSTUS	stop_codon	7600915	7600917	.	+	0	transcript_id "Ledus.S5G065800.t1"; gene_id "Ledus.S5G065800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1918.t1 is derived from g8781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13389817	13394003	.	+	.	Ledus.S2G180000
Ledus.S2	AUGUSTUS	transcript	13389817	13394003	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	start_codon	13389817	13389819	.	+	0	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13389817	13390456	1	+	0	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13389817	13390456	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13390457	13390623	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13390624	13390650	1	+	2	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13390624	13390650	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13390651	13390742	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13390743	13391051	1	+	2	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13390743	13391051	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13391052	13391143	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13391144	13391286	1	+	2	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13391144	13391286	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13391287	13391384	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13391385	13391474	0.98	+	0	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13391385	13391474	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13391475	13391589	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13391590	13391695	1	+	0	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13391590	13391695	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13391696	13391780	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13391781	13391932	0.59	+	2	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13391781	13391932	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13391933	13392081	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13392082	13392137	0.59	+	0	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13392082	13392137	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13392138	13392229	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13392230	13392380	1	+	1	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13392230	13392380	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13392381	13392466	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13392467	13392565	1	+	0	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13392467	13392565	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13392566	13392665	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13392666	13392800	0.76	+	0	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13392666	13392800	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13392801	13393017	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13393018	13393086	0.62	+	0	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13393018	13393086	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13393087	13393179	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13393180	13393425	0.62	+	0	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13393180	13393425	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13393426	13393554	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13393555	13393809	0.96	+	0	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13393555	13393809	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	intron	13393810	13393937	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	CDS	13393938	13394003	0.85	+	0	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	exon	13393938	13394003	.	+	.	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
Ledus.S2	AUGUSTUS	stop_codon	13394004	13394006	.	+	0	transcript_id "Ledus.S2G180000.t1"; gene_id "Ledus.S2G180000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3221.t1 is derived from g656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6974412	6977903	.	+	.	Ledus.S1G064200
Ledus.S1	AUGUSTUS	transcript	6974412	6977903	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	start_codon	6974412	6974414	.	+	0	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	CDS	6974412	6974526	1	+	0	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	exon	6974412	6974526	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	intron	6974527	6974605	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	CDS	6974606	6974667	1	+	2	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	exon	6974606	6974667	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	intron	6974668	6974749	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	CDS	6974750	6974856	1	+	0	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	exon	6974750	6974856	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	intron	6974857	6974932	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	CDS	6974933	6977334	0.39	+	1	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	exon	6974933	6977334	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	intron	6977335	6977460	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	CDS	6977461	6977531	0.56	+	2	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	exon	6977461	6977531	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	intron	6977532	6977612	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	CDS	6977613	6977785	0.58	+	0	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	exon	6977613	6977785	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	intron	6977786	6977875	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	CDS	6977876	6977903	0.58	+	1	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	exon	6977876	6977903	.	+	.	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
Ledus.S1	AUGUSTUS	stop_codon	6977904	6977906	.	+	0	transcript_id "Ledus.S1G064200.t1"; gene_id "Ledus.S1G064200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12629.t1 is derived from g6251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13365733	13371805	.	+	.	Ledus.S4G178500
Ledus.S4	AUGUSTUS	transcript	13365733	13371805	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	start_codon	13365733	13365735	.	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13365733	13365899	0.98	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13365733	13365899	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13365900	13365974	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13365975	13366197	1	+	1	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13365975	13366197	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13366198	13366278	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13366279	13366347	1	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13366279	13366347	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13366348	13366428	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13366429	13366479	1	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13366429	13366479	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13366480	13366567	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13366568	13366663	0.81	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13366568	13366663	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13366664	13366904	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13366905	13367003	0.8	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13366905	13367003	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13367004	13367090	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13367091	13367231	1	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13367091	13367231	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13367232	13367357	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13367358	13367425	1	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13367358	13367425	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13367426	13368312	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13368313	13368352	1	+	1	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13368313	13368352	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13368353	13368480	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13368481	13368547	1	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13368481	13368547	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13368548	13368669	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13368670	13368712	1	+	2	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13368670	13368712	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13368713	13368830	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13368831	13368912	0.94	+	1	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13368831	13368912	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13368913	13369018	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13369019	13369165	1	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13369019	13369165	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13369166	13369262	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13369263	13369439	0.97	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13369263	13369439	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13369440	13369541	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13369542	13369592	1	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13369542	13369592	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13369593	13369686	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13369687	13369811	1	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13369687	13369811	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13369812	13369907	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13369908	13370004	0.94	+	1	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13369908	13370004	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13370005	13370116	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13370117	13370149	1	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13370117	13370149	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13370150	13370214	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13370215	13370311	1	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13370215	13370311	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13370312	13370392	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13370393	13370546	1	+	2	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13370393	13370546	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13370547	13370633	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13370634	13370734	1	+	1	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13370634	13370734	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13370735	13370819	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13370820	13371805	1	+	2	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13370820	13371805	.	+	.	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	stop_codon	13371806	13371808	.	+	0	transcript_id "Ledus.S4G178500.t1"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	transcript	13365733	13371805	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	start_codon	13365733	13365735	.	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13365733	13365899	0.95	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13365733	13365899	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13365900	13365974	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13365975	13366197	1	+	1	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13365975	13366197	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13366198	13366278	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13366279	13366347	1	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13366279	13366347	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13366348	13366428	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13366429	13366479	1	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13366429	13366479	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13366480	13366567	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13366568	13366663	0.76	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13366568	13366663	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13366664	13366904	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13366905	13367003	0.73	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13366905	13367003	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13367004	13367090	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13367091	13367231	1	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13367091	13367231	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13367232	13367357	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13367358	13367425	1	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13367358	13367425	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13367426	13368312	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13368313	13368352	1	+	1	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13368313	13368352	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13368353	13368480	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13368481	13368547	1	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13368481	13368547	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13368548	13368669	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13368670	13368712	1	+	2	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13368670	13368712	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13368713	13368830	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13368831	13368912	0.96	+	1	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13368831	13368912	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13368913	13369018	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13369019	13369165	1	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13369019	13369165	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13369166	13369262	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13369263	13369429	0.81	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13369263	13369429	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13369430	13369541	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13369542	13369592	0.81	+	1	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13369542	13369592	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13369593	13369907	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13369908	13370004	0.96	+	1	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13369908	13370004	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13370005	13370116	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13370117	13370149	1	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13370117	13370149	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13370150	13370214	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13370215	13370311	1	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13370215	13370311	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13370312	13370392	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13370393	13370546	1	+	2	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13370393	13370546	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13370547	13370633	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13370634	13370734	1	+	1	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13370634	13370734	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	intron	13370735	13370819	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	CDS	13370820	13371805	0.99	+	2	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	exon	13370820	13371805	.	+	.	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
Ledus.S4	AUGUSTUS	stop_codon	13371806	13371808	.	+	0	transcript_id "Ledus.S4G178500.t2"; gene_id "Ledus.S4G178500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2533.t1 is derived from g9396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18729108	18733522	.	+	.	Ledus.S2G241500
Ledus.S2	AUGUSTUS	transcript	18729108	18733522	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	start_codon	18729108	18729110	.	+	0	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	CDS	18729108	18729953	0.99	+	0	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	exon	18729108	18729953	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	intron	18729954	18730062	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	CDS	18730063	18731042	0.98	+	0	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	exon	18730063	18731042	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	intron	18731043	18731335	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	CDS	18731336	18731660	0.8	+	1	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	exon	18731336	18731660	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	intron	18731661	18731831	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	CDS	18731832	18732080	0.99	+	0	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	exon	18731832	18732080	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	intron	18732081	18732268	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	CDS	18732269	18732442	1	+	0	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	exon	18732269	18732442	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	intron	18732443	18732533	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	CDS	18732534	18732737	0.99	+	0	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	exon	18732534	18732737	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	intron	18732738	18732858	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	CDS	18732859	18732972	1	+	0	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	exon	18732859	18732972	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	intron	18732973	18733126	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	CDS	18733127	18733522	0.97	+	0	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	exon	18733127	18733522	.	+	.	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
Ledus.S2	AUGUSTUS	stop_codon	18733523	18733525	.	+	0	transcript_id "Ledus.S2G241500.t1"; gene_id "Ledus.S2G241500"
# This transcript jg10640.t2 is derived from g11670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10641.t1 is derived from g11671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16824741	16826453	.	-	.	Ledus.S3G211800
Ledus.S3	AUGUSTUS	transcript	16824741	16826453	.	-	.	transcript_id "Ledus.S3G211800.t1"; gene_id "Ledus.S3G211800"
Ledus.S3	AUGUSTUS	stop_codon	16824738	16824740	.	-	0	transcript_id "Ledus.S3G211800.t1"; gene_id "Ledus.S3G211800"
Ledus.S3	AUGUSTUS	CDS	16824741	16826453	0.81	-	0	transcript_id "Ledus.S3G211800.t1"; gene_id "Ledus.S3G211800"
Ledus.S3	AUGUSTUS	exon	16824741	16826453	.	-	.	transcript_id "Ledus.S3G211800.t1"; gene_id "Ledus.S3G211800"
Ledus.S3	AUGUSTUS	start_codon	16826451	16826453	.	-	0	transcript_id "Ledus.S3G211800.t1"; gene_id "Ledus.S3G211800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8428.t1 is derived from g13100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11581497	11582635	.	+	.	Ledus.S5G120600
Ledus.S5	AUGUSTUS	transcript	11581497	11582635	.	+	.	transcript_id "Ledus.S5G120600.t1"; gene_id "Ledus.S5G120600"
Ledus.S5	AUGUSTUS	start_codon	11581497	11581499	.	+	0	transcript_id "Ledus.S5G120600.t1"; gene_id "Ledus.S5G120600"
Ledus.S5	AUGUSTUS	CDS	11581497	11582385	0.8	+	0	transcript_id "Ledus.S5G120600.t1"; gene_id "Ledus.S5G120600"
Ledus.S5	AUGUSTUS	exon	11581497	11582385	.	+	.	transcript_id "Ledus.S5G120600.t1"; gene_id "Ledus.S5G120600"
Ledus.S5	AUGUSTUS	intron	11582386	11582492	.	+	.	transcript_id "Ledus.S5G120600.t1"; gene_id "Ledus.S5G120600"
Ledus.S5	AUGUSTUS	CDS	11582493	11582635	0.84	+	2	transcript_id "Ledus.S5G120600.t1"; gene_id "Ledus.S5G120600"
Ledus.S5	AUGUSTUS	exon	11582493	11582635	.	+	.	transcript_id "Ledus.S5G120600.t1"; gene_id "Ledus.S5G120600"
Ledus.S5	AUGUSTUS	stop_codon	11582636	11582638	.	+	0	transcript_id "Ledus.S5G120600.t1"; gene_id "Ledus.S5G120600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9466.t1 is derived from g10496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7160618	7163373	.	+	.	Ledus.S3G094300
Ledus.S3	AUGUSTUS	transcript	7160618	7163373	.	+	.	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	start_codon	7160618	7160620	.	+	0	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	CDS	7160618	7161421	0.42	+	0	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	exon	7160618	7161421	.	+	.	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	intron	7161422	7161543	.	+	.	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	CDS	7161544	7162952	0.55	+	0	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	exon	7161544	7162952	.	+	.	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	intron	7162953	7163052	.	+	.	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	CDS	7163053	7163161	0.46	+	1	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	exon	7163053	7163161	.	+	.	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	intron	7163162	7163301	.	+	.	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	CDS	7163302	7163373	0.96	+	0	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	exon	7163302	7163373	.	+	.	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
Ledus.S3	AUGUSTUS	stop_codon	7163374	7163376	.	+	0	transcript_id "Ledus.S3G094300.t1"; gene_id "Ledus.S3G094300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7405.t1 is derived from g12076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2120964	2121429	.	+	.	Ledus.S5G018300
Ledus.S5	AUGUSTUS	transcript	2120964	2121429	.	+	.	transcript_id "Ledus.S5G018300.t1"; gene_id "Ledus.S5G018300"
Ledus.S5	AUGUSTUS	start_codon	2120964	2120966	.	+	0	transcript_id "Ledus.S5G018300.t1"; gene_id "Ledus.S5G018300"
Ledus.S5	AUGUSTUS	CDS	2120964	2121226	0.56	+	0	transcript_id "Ledus.S5G018300.t1"; gene_id "Ledus.S5G018300"
Ledus.S5	AUGUSTUS	exon	2120964	2121226	.	+	.	transcript_id "Ledus.S5G018300.t1"; gene_id "Ledus.S5G018300"
Ledus.S5	AUGUSTUS	intron	2121227	2121326	.	+	.	transcript_id "Ledus.S5G018300.t1"; gene_id "Ledus.S5G018300"
Ledus.S5	AUGUSTUS	CDS	2121327	2121429	0.77	+	1	transcript_id "Ledus.S5G018300.t1"; gene_id "Ledus.S5G018300"
Ledus.S5	AUGUSTUS	exon	2121327	2121429	.	+	.	transcript_id "Ledus.S5G018300.t1"; gene_id "Ledus.S5G018300"
Ledus.S5	AUGUSTUS	stop_codon	2121430	2121432	.	+	0	transcript_id "Ledus.S5G018300.t1"; gene_id "Ledus.S5G018300"
# This transcript jg6846.t2 is derived from g4290.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6846.t3 is derived from g4290.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6847.t1 is derived from g4291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34624212	34625986	.	-	.	Ledus.S1G426800
Ledus.S1	AUGUSTUS	transcript	34624212	34625986	.	-	.	transcript_id "Ledus.S1G426800.t1"; gene_id "Ledus.S1G426800"
Ledus.S1	AUGUSTUS	stop_codon	34624209	34624211	.	-	0	transcript_id "Ledus.S1G426800.t1"; gene_id "Ledus.S1G426800"
Ledus.S1	AUGUSTUS	CDS	34624212	34625398	0.98	-	2	transcript_id "Ledus.S1G426800.t1"; gene_id "Ledus.S1G426800"
Ledus.S1	AUGUSTUS	exon	34624212	34625398	.	-	.	transcript_id "Ledus.S1G426800.t1"; gene_id "Ledus.S1G426800"
Ledus.S1	AUGUSTUS	intron	34625399	34625481	.	-	.	transcript_id "Ledus.S1G426800.t1"; gene_id "Ledus.S1G426800"
Ledus.S1	AUGUSTUS	CDS	34625482	34625986	1	-	0	transcript_id "Ledus.S1G426800.t1"; gene_id "Ledus.S1G426800"
Ledus.S1	AUGUSTUS	exon	34625482	34625986	.	-	.	transcript_id "Ledus.S1G426800.t1"; gene_id "Ledus.S1G426800"
Ledus.S1	AUGUSTUS	start_codon	34625984	34625986	.	-	0	transcript_id "Ledus.S1G426800.t1"; gene_id "Ledus.S1G426800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12479.t1 is derived from g6100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12294272	12295549	.	-	.	Ledus.S4G163500
Ledus.S4	AUGUSTUS	transcript	12294272	12295549	.	-	.	transcript_id "Ledus.S4G163500.t1"; gene_id "Ledus.S4G163500"
Ledus.S4	AUGUSTUS	stop_codon	12294269	12294271	.	-	0	transcript_id "Ledus.S4G163500.t1"; gene_id "Ledus.S4G163500"
Ledus.S4	AUGUSTUS	CDS	12294272	12295549	1	-	0	transcript_id "Ledus.S4G163500.t1"; gene_id "Ledus.S4G163500"
Ledus.S4	AUGUSTUS	exon	12294272	12295549	.	-	.	transcript_id "Ledus.S4G163500.t1"; gene_id "Ledus.S4G163500"
Ledus.S4	AUGUSTUS	start_codon	12295547	12295549	.	-	0	transcript_id "Ledus.S4G163500.t1"; gene_id "Ledus.S4G163500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5994.t1 is derived from g3437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28188074	28188792	.	+	.	Ledus.S1G341500
Ledus.S1	AUGUSTUS	transcript	28188074	28188792	.	+	.	transcript_id "Ledus.S1G341500.t1"; gene_id "Ledus.S1G341500"
Ledus.S1	AUGUSTUS	start_codon	28188074	28188076	.	+	0	transcript_id "Ledus.S1G341500.t1"; gene_id "Ledus.S1G341500"
Ledus.S1	AUGUSTUS	CDS	28188074	28188354	0.68	+	0	transcript_id "Ledus.S1G341500.t1"; gene_id "Ledus.S1G341500"
Ledus.S1	AUGUSTUS	exon	28188074	28188354	.	+	.	transcript_id "Ledus.S1G341500.t1"; gene_id "Ledus.S1G341500"
Ledus.S1	AUGUSTUS	intron	28188355	28188545	.	+	.	transcript_id "Ledus.S1G341500.t1"; gene_id "Ledus.S1G341500"
Ledus.S1	AUGUSTUS	CDS	28188546	28188792	0.94	+	1	transcript_id "Ledus.S1G341500.t1"; gene_id "Ledus.S1G341500"
Ledus.S1	AUGUSTUS	exon	28188546	28188792	.	+	.	transcript_id "Ledus.S1G341500.t1"; gene_id "Ledus.S1G341500"
Ledus.S1	AUGUSTUS	stop_codon	28188793	28188795	.	+	0	transcript_id "Ledus.S1G341500.t1"; gene_id "Ledus.S1G341500"
# This transcript jg1589.t2 is derived from g8450.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1589.t3 is derived from g8450.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1590.t1 is derived from g8451.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11162029	11167059	.	-	.	Ledus.S2G147200
Ledus.S2	AUGUSTUS	transcript	11162029	11167059	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	stop_codon	11162026	11162028	.	-	0	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11162029	11162086	0.71	-	1	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11162029	11162086	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11162087	11162174	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11162175	11162420	1	-	1	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11162175	11162420	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11162421	11162541	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11162542	11162948	0.98	-	0	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11162542	11162948	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11162949	11163030	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11163031	11163079	1	-	1	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11163031	11163079	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11163080	11163168	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11163169	11163960	0.95	-	1	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11163169	11163960	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11163961	11164066	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11164067	11164135	1	-	1	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11164067	11164135	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11164136	11164258	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11164259	11164306	1	-	1	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11164259	11164306	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11164307	11164394	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11164395	11164469	1	-	1	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11164395	11164469	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11164470	11164593	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11164594	11164668	1	-	1	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11164594	11164668	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11164669	11164775	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11164776	11164851	0.98	-	2	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11164776	11164851	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11164852	11165057	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11165058	11165161	1	-	1	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11165058	11165161	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11165162	11166421	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11166422	11166885	1	-	0	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11166422	11166885	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11166886	11167005	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11167006	11167059	0.48	-	0	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11167006	11167059	.	-	.	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	start_codon	11167057	11167059	.	-	0	transcript_id "Ledus.S2G147200.t1"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	transcript	11162029	11167059	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	stop_codon	11162026	11162028	.	-	0	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11162029	11162086	0.74	-	1	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11162029	11162086	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11162087	11162174	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11162175	11162420	1	-	1	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11162175	11162420	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11162421	11162541	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11162542	11162948	1	-	0	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11162542	11162948	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11162949	11163030	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11163031	11163079	1	-	1	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11163031	11163079	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11163080	11163168	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11163169	11163960	0.98	-	1	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11163169	11163960	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11163961	11164066	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11164067	11164135	1	-	1	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11164067	11164135	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11164136	11164258	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11164259	11164306	1	-	1	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11164259	11164306	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11164307	11164394	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11164395	11164469	1	-	1	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11164395	11164469	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11164470	11164593	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11164594	11164668	1	-	1	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11164594	11164668	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11164669	11164775	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11164776	11164851	0.98	-	2	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11164776	11164851	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11164852	11165057	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11165058	11165158	0.87	-	1	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11165058	11165158	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11165159	11166421	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11166422	11166885	1	-	0	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11166422	11166885	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	intron	11166886	11167005	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	CDS	11167006	11167059	0.57	-	0	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	exon	11167006	11167059	.	-	.	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
Ledus.S2	AUGUSTUS	start_codon	11167057	11167059	.	-	0	transcript_id "Ledus.S2G147200.t2"; gene_id "Ledus.S2G147200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2768.t1 is derived from g202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3410122	3410905	.	+	.	Ledus.S1G018900
Ledus.S1	AUGUSTUS	transcript	3410122	3410905	.	+	.	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	start_codon	3410122	3410124	.	+	0	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	CDS	3410122	3410250	0.36	+	0	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	exon	3410122	3410250	.	+	.	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	intron	3410251	3410376	.	+	.	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	CDS	3410377	3410412	0.73	+	0	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	exon	3410377	3410412	.	+	.	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	intron	3410413	3410594	.	+	.	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	CDS	3410595	3410684	0.61	+	0	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	exon	3410595	3410684	.	+	.	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	intron	3410685	3410755	.	+	.	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	CDS	3410756	3410905	0.84	+	0	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	exon	3410756	3410905	.	+	.	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
Ledus.S1	AUGUSTUS	stop_codon	3410906	3410908	.	+	0	transcript_id "Ledus.S1G018900.t1"; gene_id "Ledus.S1G018900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg118.t1 is derived from g6460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C15	AUGUSTUS	gene	22082	22510	.	+	.	Ledus.C15G000200
Ledus.C15	AUGUSTUS	transcript	22082	22510	.	+	.	transcript_id "Ledus.C15G000200.t1"; gene_id "Ledus.C15G000200"
Ledus.C15	AUGUSTUS	start_codon	22082	22084	.	+	0	transcript_id "Ledus.C15G000200.t1"; gene_id "Ledus.C15G000200"
Ledus.C15	AUGUSTUS	CDS	22082	22510	0.98	+	0	transcript_id "Ledus.C15G000200.t1"; gene_id "Ledus.C15G000200"
Ledus.C15	AUGUSTUS	exon	22082	22510	.	+	.	transcript_id "Ledus.C15G000200.t1"; gene_id "Ledus.C15G000200"
Ledus.C15	AUGUSTUS	stop_codon	22511	22513	.	+	0	transcript_id "Ledus.C15G000200.t1"; gene_id "Ledus.C15G000200"
# This transcript jg2848.t2 is derived from g282.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2849.t1 is derived from g283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4150967	4152969	.	-	.	Ledus.S1G027000
Ledus.S1	AUGUSTUS	transcript	4150967	4152969	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	stop_codon	4150964	4150966	.	-	0	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	CDS	4150967	4151171	1	-	1	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	exon	4150967	4151171	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	intron	4151172	4151321	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	CDS	4151322	4151389	1	-	0	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	exon	4151322	4151389	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	intron	4151390	4151476	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	CDS	4151477	4151605	1	-	0	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	exon	4151477	4151605	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	intron	4151606	4151698	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	CDS	4151699	4151844	1	-	2	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	exon	4151699	4151844	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	intron	4151845	4151984	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	CDS	4151985	4152116	1	-	2	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	exon	4151985	4152116	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	intron	4152117	4152239	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	CDS	4152240	4152396	1	-	0	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	exon	4152240	4152396	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	intron	4152397	4152536	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	CDS	4152537	4152752	1	-	0	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	exon	4152537	4152752	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	intron	4152753	4152900	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	CDS	4152901	4152969	1	-	0	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	exon	4152901	4152969	.	-	.	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
Ledus.S1	AUGUSTUS	start_codon	4152967	4152969	.	-	0	transcript_id "Ledus.S1G027000.t1"; gene_id "Ledus.S1G027000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7148.t1 is derived from g6679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1775255	1776656	.	-	.	Ledus.C7G020900
Ledus.C7	AUGUSTUS	transcript	1775255	1776656	.	-	.	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	stop_codon	1775252	1775254	.	-	0	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	CDS	1775255	1775463	1	-	2	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	exon	1775255	1775463	.	-	.	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	intron	1775464	1775826	.	-	.	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	CDS	1775827	1775911	1	-	0	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	exon	1775827	1775911	.	-	.	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	intron	1775912	1776083	.	-	.	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	CDS	1776084	1776117	0.96	-	1	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	exon	1776084	1776117	.	-	.	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	intron	1776118	1776182	.	-	.	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	CDS	1776183	1776229	0.96	-	0	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	exon	1776183	1776229	.	-	.	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	intron	1776230	1776329	.	-	.	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	CDS	1776330	1776656	1	-	0	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	exon	1776330	1776656	.	-	.	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
Ledus.C7	AUGUSTUS	start_codon	1776654	1776656	.	-	0	transcript_id "Ledus.C7G020900.t1"; gene_id "Ledus.C7G020900"
# This transcript jg5080.t2 is derived from g2519.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5080.t3 is derived from g2519.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5081.t1 is derived from g2520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21483582	21484914	.	+	.	Ledus.S1G250200
Ledus.S1	AUGUSTUS	transcript	21483582	21484914	.	+	.	transcript_id "Ledus.S1G250200.t1"; gene_id "Ledus.S1G250200"
Ledus.S1	AUGUSTUS	start_codon	21483582	21483584	.	+	0	transcript_id "Ledus.S1G250200.t1"; gene_id "Ledus.S1G250200"
Ledus.S1	AUGUSTUS	CDS	21483582	21483595	0.42	+	0	transcript_id "Ledus.S1G250200.t1"; gene_id "Ledus.S1G250200"
Ledus.S1	AUGUSTUS	exon	21483582	21483595	.	+	.	transcript_id "Ledus.S1G250200.t1"; gene_id "Ledus.S1G250200"
Ledus.S1	AUGUSTUS	intron	21483596	21483697	.	+	.	transcript_id "Ledus.S1G250200.t1"; gene_id "Ledus.S1G250200"
Ledus.S1	AUGUSTUS	CDS	21483698	21484840	0.74	+	1	transcript_id "Ledus.S1G250200.t1"; gene_id "Ledus.S1G250200"
Ledus.S1	AUGUSTUS	exon	21483698	21484840	.	+	.	transcript_id "Ledus.S1G250200.t1"; gene_id "Ledus.S1G250200"
Ledus.S1	AUGUSTUS	intron	21484841	21484901	.	+	.	transcript_id "Ledus.S1G250200.t1"; gene_id "Ledus.S1G250200"
Ledus.S1	AUGUSTUS	CDS	21484902	21484914	0.65	+	1	transcript_id "Ledus.S1G250200.t1"; gene_id "Ledus.S1G250200"
Ledus.S1	AUGUSTUS	exon	21484902	21484914	.	+	.	transcript_id "Ledus.S1G250200.t1"; gene_id "Ledus.S1G250200"
Ledus.S1	AUGUSTUS	stop_codon	21484915	21484917	.	+	0	transcript_id "Ledus.S1G250200.t1"; gene_id "Ledus.S1G250200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13133.t1 is derived from g6943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6737208	6737507	.	-	.	Ledus.S6G019500
Ledus.S6	AUGUSTUS	transcript	6737208	6737507	.	-	.	transcript_id "Ledus.S6G019500.t1"; gene_id "Ledus.S6G019500"
Ledus.S6	AUGUSTUS	stop_codon	6737205	6737207	.	-	0	transcript_id "Ledus.S6G019500.t1"; gene_id "Ledus.S6G019500"
Ledus.S6	AUGUSTUS	CDS	6737208	6737507	0.99	-	0	transcript_id "Ledus.S6G019500.t1"; gene_id "Ledus.S6G019500"
Ledus.S6	AUGUSTUS	exon	6737208	6737507	.	-	.	transcript_id "Ledus.S6G019500.t1"; gene_id "Ledus.S6G019500"
Ledus.S6	AUGUSTUS	start_codon	6737505	6737507	.	-	0	transcript_id "Ledus.S6G019500.t1"; gene_id "Ledus.S6G019500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4684.t1 is derived from g2122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18981103	18982468	.	+	.	Ledus.S1G210500
Ledus.S1	AUGUSTUS	transcript	18981103	18982468	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	start_codon	18981103	18981105	.	+	0	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981103	18981258	0.94	+	0	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981103	18981258	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	intron	18981259	18981333	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981334	18981412	0.98	+	0	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981334	18981412	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	intron	18981413	18981528	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981529	18981593	0.98	+	2	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981529	18981593	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	intron	18981594	18981687	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981688	18981748	1	+	0	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981688	18981748	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	intron	18981749	18981832	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981833	18981873	1	+	2	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981833	18981873	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	intron	18981874	18981954	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981955	18982259	1	+	0	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981955	18982259	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	intron	18982260	18982359	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18982360	18982468	0.57	+	1	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18982360	18982468	.	+	.	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	stop_codon	18982469	18982471	.	+	0	transcript_id "Ledus.S1G210500.t1"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	transcript	18981724	18982468	.	+	.	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	start_codon	18981724	18981726	.	+	0	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981724	18981748	0.56	+	0	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981724	18981748	.	+	.	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	intron	18981749	18981832	.	+	.	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981833	18981873	1	+	2	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981833	18981873	.	+	.	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	intron	18981874	18981954	.	+	.	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981955	18982259	0.98	+	0	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981955	18982259	.	+	.	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	intron	18982260	18982359	.	+	.	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18982360	18982468	0.7	+	1	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18982360	18982468	.	+	.	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	stop_codon	18982469	18982471	.	+	0	transcript_id "Ledus.S1G210500.t2"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	transcript	18981103	18981691	.	+	.	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	start_codon	18981103	18981105	.	+	0	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981103	18981258	0.99	+	0	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981103	18981258	.	+	.	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	intron	18981259	18981333	.	+	.	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981334	18981412	0.97	+	0	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981334	18981412	.	+	.	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	intron	18981413	18981505	.	+	.	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981506	18981593	0.57	+	2	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981506	18981593	.	+	.	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	intron	18981594	18981687	.	+	.	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	CDS	18981688	18981691	0.57	+	1	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	exon	18981688	18981691	.	+	.	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
Ledus.S1	AUGUSTUS	stop_codon	18981692	18981694	.	+	0	transcript_id "Ledus.S1G210500.t3"; gene_id "Ledus.S1G210500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2112.t1 is derived from g8975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14787319	14788418	.	-	.	Ledus.S2G199400
Ledus.S2	AUGUSTUS	transcript	14787319	14788418	.	-	.	transcript_id "Ledus.S2G199400.t1"; gene_id "Ledus.S2G199400"
Ledus.S2	AUGUSTUS	stop_codon	14787316	14787318	.	-	0	transcript_id "Ledus.S2G199400.t1"; gene_id "Ledus.S2G199400"
Ledus.S2	AUGUSTUS	CDS	14787319	14787334	0.92	-	1	transcript_id "Ledus.S2G199400.t1"; gene_id "Ledus.S2G199400"
Ledus.S2	AUGUSTUS	exon	14787319	14787334	.	-	.	transcript_id "Ledus.S2G199400.t1"; gene_id "Ledus.S2G199400"
Ledus.S2	AUGUSTUS	intron	14787335	14787420	.	-	.	transcript_id "Ledus.S2G199400.t1"; gene_id "Ledus.S2G199400"
Ledus.S2	AUGUSTUS	CDS	14787421	14787457	1	-	2	transcript_id "Ledus.S2G199400.t1"; gene_id "Ledus.S2G199400"
Ledus.S2	AUGUSTUS	exon	14787421	14787457	.	-	.	transcript_id "Ledus.S2G199400.t1"; gene_id "Ledus.S2G199400"
Ledus.S2	AUGUSTUS	intron	14787458	14787562	.	-	.	transcript_id "Ledus.S2G199400.t1"; gene_id "Ledus.S2G199400"
Ledus.S2	AUGUSTUS	CDS	14787563	14788418	0.97	-	0	transcript_id "Ledus.S2G199400.t1"; gene_id "Ledus.S2G199400"
Ledus.S2	AUGUSTUS	exon	14787563	14788418	.	-	.	transcript_id "Ledus.S2G199400.t1"; gene_id "Ledus.S2G199400"
Ledus.S2	AUGUSTUS	start_codon	14788416	14788418	.	-	0	transcript_id "Ledus.S2G199400.t1"; gene_id "Ledus.S2G199400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4811.t1 is derived from g2249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19910893	19912450	.	-	.	Ledus.S1G223200
Ledus.S1	AUGUSTUS	transcript	19910893	19912450	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	stop_codon	19910890	19910892	.	-	0	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	CDS	19910893	19910950	0.96	-	1	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	exon	19910893	19910950	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	intron	19910951	19911108	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	CDS	19911109	19911172	1	-	2	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	exon	19911109	19911172	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	intron	19911173	19911271	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	CDS	19911272	19911327	1	-	1	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	exon	19911272	19911327	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	intron	19911328	19911480	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	CDS	19911481	19911562	1	-	2	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	exon	19911481	19911562	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	intron	19911563	19911672	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	CDS	19911673	19911733	1	-	0	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	exon	19911673	19911733	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	intron	19911734	19911821	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	CDS	19911822	19911915	1	-	1	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	exon	19911822	19911915	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	intron	19911916	19912019	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	CDS	19912020	19912075	1	-	0	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	exon	19912020	19912075	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	intron	19912076	19912170	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	CDS	19912171	19912233	1	-	0	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	exon	19912171	19912233	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	intron	19912234	19912330	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	CDS	19912331	19912450	0.95	-	0	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	exon	19912331	19912450	.	-	.	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
Ledus.S1	AUGUSTUS	start_codon	19912448	19912450	.	-	0	transcript_id "Ledus.S1G223200.t1"; gene_id "Ledus.S1G223200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6303.t1 is derived from g3746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30360882	30362197	.	+	.	Ledus.S1G372400
Ledus.S1	AUGUSTUS	transcript	30360882	30362197	.	+	.	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	start_codon	30360882	30360884	.	+	0	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	CDS	30360882	30361046	0.8	+	0	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	exon	30360882	30361046	.	+	.	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	intron	30361047	30361150	.	+	.	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	CDS	30361151	30361375	0.97	+	0	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	exon	30361151	30361375	.	+	.	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	intron	30361376	30361464	.	+	.	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	CDS	30361465	30361668	1	+	0	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	exon	30361465	30361668	.	+	.	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	intron	30361669	30361761	.	+	.	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	CDS	30361762	30361823	1	+	0	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	exon	30361762	30361823	.	+	.	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	intron	30361824	30361929	.	+	.	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	CDS	30361930	30362197	0.99	+	1	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	exon	30361930	30362197	.	+	.	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
Ledus.S1	AUGUSTUS	stop_codon	30362198	30362200	.	+	0	transcript_id "Ledus.S1G372400.t1"; gene_id "Ledus.S1G372400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6556.t1 is derived from g3999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32318317	32325016	.	+	.	Ledus.S1G397700
Ledus.S1	AUGUSTUS	transcript	32318317	32325016	.	+	.	transcript_id "Ledus.S1G397700.t1"; gene_id "Ledus.S1G397700"
Ledus.S1	AUGUSTUS	start_codon	32318317	32318319	.	+	0	transcript_id "Ledus.S1G397700.t1"; gene_id "Ledus.S1G397700"
Ledus.S1	AUGUSTUS	CDS	32318317	32322144	0.56	+	0	transcript_id "Ledus.S1G397700.t1"; gene_id "Ledus.S1G397700"
Ledus.S1	AUGUSTUS	exon	32318317	32322144	.	+	.	transcript_id "Ledus.S1G397700.t1"; gene_id "Ledus.S1G397700"
Ledus.S1	AUGUSTUS	intron	32322145	32322226	.	+	.	transcript_id "Ledus.S1G397700.t1"; gene_id "Ledus.S1G397700"
Ledus.S1	AUGUSTUS	CDS	32322227	32325016	0.98	+	0	transcript_id "Ledus.S1G397700.t1"; gene_id "Ledus.S1G397700"
Ledus.S1	AUGUSTUS	exon	32322227	32325016	.	+	.	transcript_id "Ledus.S1G397700.t1"; gene_id "Ledus.S1G397700"
Ledus.S1	AUGUSTUS	stop_codon	32325017	32325019	.	+	0	transcript_id "Ledus.S1G397700.t1"; gene_id "Ledus.S1G397700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10114.t1 is derived from g11144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12888913	12889821	.	-	.	Ledus.S3G159100
Ledus.S3	AUGUSTUS	transcript	12888913	12889821	.	-	.	transcript_id "Ledus.S3G159100.t1"; gene_id "Ledus.S3G159100"
Ledus.S3	AUGUSTUS	stop_codon	12888910	12888912	.	-	0	transcript_id "Ledus.S3G159100.t1"; gene_id "Ledus.S3G159100"
Ledus.S3	AUGUSTUS	CDS	12888913	12889821	0.99	-	0	transcript_id "Ledus.S3G159100.t1"; gene_id "Ledus.S3G159100"
Ledus.S3	AUGUSTUS	exon	12888913	12889821	.	-	.	transcript_id "Ledus.S3G159100.t1"; gene_id "Ledus.S3G159100"
Ledus.S3	AUGUSTUS	start_codon	12889819	12889821	.	-	0	transcript_id "Ledus.S3G159100.t1"; gene_id "Ledus.S3G159100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg420.t1 is derived from g7281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2345688	2346194	.	+	.	Ledus.S2G030200
Ledus.S2	AUGUSTUS	transcript	2345688	2346194	.	+	.	transcript_id "Ledus.S2G030200.t1"; gene_id "Ledus.S2G030200"
Ledus.S2	AUGUSTUS	start_codon	2345688	2345690	.	+	0	transcript_id "Ledus.S2G030200.t1"; gene_id "Ledus.S2G030200"
Ledus.S2	AUGUSTUS	CDS	2345688	2346194	0.98	+	0	transcript_id "Ledus.S2G030200.t1"; gene_id "Ledus.S2G030200"
Ledus.S2	AUGUSTUS	exon	2345688	2346194	.	+	.	transcript_id "Ledus.S2G030200.t1"; gene_id "Ledus.S2G030200"
Ledus.S2	AUGUSTUS	stop_codon	2346195	2346197	.	+	0	transcript_id "Ledus.S2G030200.t1"; gene_id "Ledus.S2G030200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11236.t1 is derived from g4854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2863861	2864619	.	-	.	Ledus.S4G039200
Ledus.S4	AUGUSTUS	transcript	2863861	2864619	.	-	.	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	stop_codon	2863858	2863860	.	-	0	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	CDS	2863861	2863893	0.7	-	0	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	exon	2863861	2863893	.	-	.	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	intron	2863894	2864003	.	-	.	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	CDS	2864004	2864099	0.92	-	0	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	exon	2864004	2864099	.	-	.	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	intron	2864100	2864211	.	-	.	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	CDS	2864212	2864290	1	-	1	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	exon	2864212	2864290	.	-	.	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	intron	2864291	2864365	.	-	.	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	CDS	2864366	2864455	0.98	-	1	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	exon	2864366	2864455	.	-	.	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	intron	2864456	2864566	.	-	.	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	CDS	2864567	2864619	0.94	-	0	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	exon	2864567	2864619	.	-	.	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
Ledus.S4	AUGUSTUS	start_codon	2864617	2864619	.	-	0	transcript_id "Ledus.S4G039200.t1"; gene_id "Ledus.S4G039200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1470.t1 is derived from g8331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10359565	10362035	.	-	.	Ledus.S2G135200
Ledus.S2	AUGUSTUS	transcript	10359565	10362035	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	stop_codon	10359562	10359564	.	-	0	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	CDS	10359565	10359660	1	-	0	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	exon	10359565	10359660	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	intron	10359661	10359740	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	CDS	10359741	10359923	1	-	0	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	exon	10359741	10359923	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	intron	10359924	10360010	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	CDS	10360011	10360115	1	-	0	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	exon	10360011	10360115	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	intron	10360116	10360206	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	CDS	10360207	10360599	1	-	0	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	exon	10360207	10360599	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	intron	10360600	10360694	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	CDS	10360695	10360771	1	-	2	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	exon	10360695	10360771	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	intron	10360772	10360856	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	CDS	10360857	10360911	1	-	0	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	exon	10360857	10360911	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	intron	10360912	10361014	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	CDS	10361015	10361060	1	-	1	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	exon	10361015	10361060	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	intron	10361061	10361238	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	CDS	10361239	10361324	1	-	0	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	exon	10361239	10361324	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	intron	10361325	10361450	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	CDS	10361451	10361516	1	-	0	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	exon	10361451	10361516	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	intron	10361517	10361596	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	CDS	10361597	10361662	1	-	0	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	exon	10361597	10361662	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	intron	10361663	10361786	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	CDS	10361787	10361876	0.97	-	0	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	exon	10361787	10361876	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	intron	10361877	10361978	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	CDS	10361979	10362035	0.63	-	0	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	exon	10361979	10362035	.	-	.	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
Ledus.S2	AUGUSTUS	start_codon	10362033	10362035	.	-	0	transcript_id "Ledus.S2G135200.t1"; gene_id "Ledus.S2G135200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5402.t1 is derived from g2841.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24002845	24004868	.	+	.	Ledus.S1G282300
Ledus.S1	AUGUSTUS	transcript	24002845	24004868	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	start_codon	24002845	24002847	.	+	0	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	CDS	24002845	24002879	0.99	+	0	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	exon	24002845	24002879	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	intron	24002880	24003222	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	CDS	24003223	24003299	0.76	+	1	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	exon	24003223	24003299	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	intron	24003300	24003354	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	CDS	24003355	24003417	0.89	+	2	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	exon	24003355	24003417	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	intron	24003418	24003651	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	CDS	24003652	24003762	0.99	+	2	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	exon	24003652	24003762	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	intron	24003763	24003873	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	CDS	24003874	24003905	1	+	2	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	exon	24003874	24003905	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	intron	24003906	24003989	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	CDS	24003990	24004094	1	+	0	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	exon	24003990	24004094	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	intron	24004095	24004233	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	CDS	24004234	24004357	0.96	+	0	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	exon	24004234	24004357	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	intron	24004358	24004469	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	CDS	24004470	24004541	1	+	2	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	exon	24004470	24004541	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	intron	24004542	24004622	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	CDS	24004623	24004696	1	+	2	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	exon	24004623	24004696	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	intron	24004697	24004787	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	CDS	24004788	24004868	1	+	0	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	exon	24004788	24004868	.	+	.	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
Ledus.S1	AUGUSTUS	stop_codon	24004869	24004871	.	+	0	transcript_id "Ledus.S1G282300.t1"; gene_id "Ledus.S1G282300"
# This transcript jg12883.t2 is derived from g4456.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12884.t1 is derived from g4457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	341635	342225	.	+	.	Ledus.C10G002700
Ledus.C10	AUGUSTUS	transcript	341635	342225	.	+	.	transcript_id "Ledus.C10G002700.t1"; gene_id "Ledus.C10G002700"
Ledus.C10	AUGUSTUS	start_codon	341635	341637	.	+	0	transcript_id "Ledus.C10G002700.t1"; gene_id "Ledus.C10G002700"
Ledus.C10	AUGUSTUS	CDS	341635	341744	0.33	+	0	transcript_id "Ledus.C10G002700.t1"; gene_id "Ledus.C10G002700"
Ledus.C10	AUGUSTUS	exon	341635	341744	.	+	.	transcript_id "Ledus.C10G002700.t1"; gene_id "Ledus.C10G002700"
Ledus.C10	AUGUSTUS	intron	341745	342104	.	+	.	transcript_id "Ledus.C10G002700.t1"; gene_id "Ledus.C10G002700"
Ledus.C10	AUGUSTUS	CDS	342105	342225	0.44	+	1	transcript_id "Ledus.C10G002700.t1"; gene_id "Ledus.C10G002700"
Ledus.C10	AUGUSTUS	exon	342105	342225	.	+	.	transcript_id "Ledus.C10G002700.t1"; gene_id "Ledus.C10G002700"
Ledus.C10	AUGUSTUS	stop_codon	342226	342228	.	+	0	transcript_id "Ledus.C10G002700.t1"; gene_id "Ledus.C10G002700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8648.t1 is derived from g9678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1071845	1073989	.	-	.	Ledus.S3G012500
Ledus.S3	AUGUSTUS	transcript	1071845	1073989	.	-	.	transcript_id "Ledus.S3G012500.t1"; gene_id "Ledus.S3G012500"
Ledus.S3	AUGUSTUS	stop_codon	1071842	1071844	.	-	0	transcript_id "Ledus.S3G012500.t1"; gene_id "Ledus.S3G012500"
Ledus.S3	AUGUSTUS	CDS	1071845	1073989	0.72	-	0	transcript_id "Ledus.S3G012500.t1"; gene_id "Ledus.S3G012500"
Ledus.S3	AUGUSTUS	exon	1071845	1073989	.	-	.	transcript_id "Ledus.S3G012500.t1"; gene_id "Ledus.S3G012500"
Ledus.S3	AUGUSTUS	start_codon	1073987	1073989	.	-	0	transcript_id "Ledus.S3G012500.t1"; gene_id "Ledus.S3G012500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1508.t1 is derived from g8369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10631635	10633038	.	-	.	Ledus.S2G139000
Ledus.S2	AUGUSTUS	transcript	10631635	10633038	.	-	.	transcript_id "Ledus.S2G139000.t1"; gene_id "Ledus.S2G139000"
Ledus.S2	AUGUSTUS	stop_codon	10631632	10631634	.	-	0	transcript_id "Ledus.S2G139000.t1"; gene_id "Ledus.S2G139000"
Ledus.S2	AUGUSTUS	CDS	10631635	10633038	0.98	-	0	transcript_id "Ledus.S2G139000.t1"; gene_id "Ledus.S2G139000"
Ledus.S2	AUGUSTUS	exon	10631635	10633038	.	-	.	transcript_id "Ledus.S2G139000.t1"; gene_id "Ledus.S2G139000"
Ledus.S2	AUGUSTUS	start_codon	10633036	10633038	.	-	0	transcript_id "Ledus.S2G139000.t1"; gene_id "Ledus.S2G139000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6597.t1 is derived from g4040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32583234	32585218	.	-	.	Ledus.S1G401800
Ledus.S1	AUGUSTUS	transcript	32583234	32585218	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	stop_codon	32583231	32583233	.	-	0	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	CDS	32583234	32583341	0.98	-	0	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	exon	32583234	32583341	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	intron	32583342	32583447	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	CDS	32583448	32583532	0.99	-	1	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	exon	32583448	32583532	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	intron	32583533	32583624	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	CDS	32583625	32583707	0.99	-	0	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	exon	32583625	32583707	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	intron	32583708	32583821	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	CDS	32583822	32583887	1	-	0	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	exon	32583822	32583887	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	intron	32583888	32583991	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	CDS	32583992	32584063	0.78	-	0	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	exon	32583992	32584063	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	intron	32584064	32584153	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	CDS	32584154	32584219	1	-	0	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	exon	32584154	32584219	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	intron	32584220	32584313	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	CDS	32584314	32584419	1	-	1	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	exon	32584314	32584419	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	intron	32584420	32584510	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	CDS	32584511	32584539	1	-	0	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	exon	32584511	32584539	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	intron	32584540	32584669	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	CDS	32584670	32585218	0.63	-	0	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	exon	32584670	32585218	.	-	.	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
Ledus.S1	AUGUSTUS	start_codon	32585216	32585218	.	-	0	transcript_id "Ledus.S1G401800.t1"; gene_id "Ledus.S1G401800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9087.t1 is derived from g10117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4453126	4455695	.	+	.	Ledus.S3G056400
Ledus.S3	AUGUSTUS	transcript	4453126	4455695	.	+	.	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	start_codon	4453126	4453128	.	+	0	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	CDS	4453126	4453129	0.96	+	0	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	exon	4453126	4453129	.	+	.	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	intron	4453130	4453303	.	+	.	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	CDS	4453304	4454137	0.95	+	2	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	exon	4453304	4454137	.	+	.	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	intron	4454138	4454406	.	+	.	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	CDS	4454407	4455100	0.92	+	2	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	exon	4454407	4455100	.	+	.	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	intron	4455101	4455394	.	+	.	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	CDS	4455395	4455695	0.98	+	1	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	exon	4455395	4455695	.	+	.	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
Ledus.S3	AUGUSTUS	stop_codon	4455696	4455698	.	+	0	transcript_id "Ledus.S3G056400.t1"; gene_id "Ledus.S3G056400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9591.t1 is derived from g10621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8159589	8160428	.	+	.	Ledus.S3G106800
Ledus.S3	AUGUSTUS	transcript	8159589	8160428	.	+	.	transcript_id "Ledus.S3G106800.t1"; gene_id "Ledus.S3G106800"
Ledus.S3	AUGUSTUS	start_codon	8159589	8159591	.	+	0	transcript_id "Ledus.S3G106800.t1"; gene_id "Ledus.S3G106800"
Ledus.S3	AUGUSTUS	CDS	8159589	8160428	0.32	+	0	transcript_id "Ledus.S3G106800.t1"; gene_id "Ledus.S3G106800"
Ledus.S3	AUGUSTUS	exon	8159589	8160428	.	+	.	transcript_id "Ledus.S3G106800.t1"; gene_id "Ledus.S3G106800"
Ledus.S3	AUGUSTUS	stop_codon	8160429	8160431	.	+	0	transcript_id "Ledus.S3G106800.t1"; gene_id "Ledus.S3G106800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7690.t1 is derived from g12361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5204426	5205762	.	-	.	Ledus.S5G046800
Ledus.S5	AUGUSTUS	transcript	5204426	5205762	.	-	.	transcript_id "Ledus.S5G046800.t1"; gene_id "Ledus.S5G046800"
Ledus.S5	AUGUSTUS	stop_codon	5204423	5204425	.	-	0	transcript_id "Ledus.S5G046800.t1"; gene_id "Ledus.S5G046800"
Ledus.S5	AUGUSTUS	CDS	5204426	5205089	0.96	-	1	transcript_id "Ledus.S5G046800.t1"; gene_id "Ledus.S5G046800"
Ledus.S5	AUGUSTUS	exon	5204426	5205089	.	-	.	transcript_id "Ledus.S5G046800.t1"; gene_id "Ledus.S5G046800"
Ledus.S5	AUGUSTUS	intron	5205090	5205347	.	-	.	transcript_id "Ledus.S5G046800.t1"; gene_id "Ledus.S5G046800"
Ledus.S5	AUGUSTUS	CDS	5205348	5205413	0.88	-	1	transcript_id "Ledus.S5G046800.t1"; gene_id "Ledus.S5G046800"
Ledus.S5	AUGUSTUS	exon	5205348	5205413	.	-	.	transcript_id "Ledus.S5G046800.t1"; gene_id "Ledus.S5G046800"
Ledus.S5	AUGUSTUS	intron	5205414	5205622	.	-	.	transcript_id "Ledus.S5G046800.t1"; gene_id "Ledus.S5G046800"
Ledus.S5	AUGUSTUS	CDS	5205623	5205762	0.33	-	0	transcript_id "Ledus.S5G046800.t1"; gene_id "Ledus.S5G046800"
Ledus.S5	AUGUSTUS	exon	5205623	5205762	.	-	.	transcript_id "Ledus.S5G046800.t1"; gene_id "Ledus.S5G046800"
Ledus.S5	AUGUSTUS	start_codon	5205760	5205762	.	-	0	transcript_id "Ledus.S5G046800.t1"; gene_id "Ledus.S5G046800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2455.t1 is derived from g9318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18213210	18213937	.	-	.	Ledus.S2G233700
Ledus.S2	AUGUSTUS	transcript	18213210	18213937	.	-	.	transcript_id "Ledus.S2G233700.t1"; gene_id "Ledus.S2G233700"
Ledus.S2	AUGUSTUS	stop_codon	18213207	18213209	.	-	0	transcript_id "Ledus.S2G233700.t1"; gene_id "Ledus.S2G233700"
Ledus.S2	AUGUSTUS	CDS	18213210	18213493	0.22	-	2	transcript_id "Ledus.S2G233700.t1"; gene_id "Ledus.S2G233700"
Ledus.S2	AUGUSTUS	exon	18213210	18213493	.	-	.	transcript_id "Ledus.S2G233700.t1"; gene_id "Ledus.S2G233700"
Ledus.S2	AUGUSTUS	intron	18213494	18213648	.	-	.	transcript_id "Ledus.S2G233700.t1"; gene_id "Ledus.S2G233700"
Ledus.S2	AUGUSTUS	CDS	18213649	18213937	0.26	-	0	transcript_id "Ledus.S2G233700.t1"; gene_id "Ledus.S2G233700"
Ledus.S2	AUGUSTUS	exon	18213649	18213937	.	-	.	transcript_id "Ledus.S2G233700.t1"; gene_id "Ledus.S2G233700"
Ledus.S2	AUGUSTUS	start_codon	18213935	18213937	.	-	0	transcript_id "Ledus.S2G233700.t1"; gene_id "Ledus.S2G233700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11394.t1 is derived from g5012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3989925	3992903	.	+	.	Ledus.S4G055000
Ledus.S4	AUGUSTUS	transcript	3989925	3992903	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	start_codon	3989925	3989927	.	+	0	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	CDS	3989925	3989972	0.97	+	0	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	exon	3989925	3989972	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	intron	3989973	3990068	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	CDS	3990069	3990206	1	+	0	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	exon	3990069	3990206	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	intron	3990207	3990765	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	CDS	3990766	3990847	1	+	0	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	exon	3990766	3990847	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	intron	3990848	3990931	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	CDS	3990932	3991064	1	+	2	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	exon	3990932	3991064	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	intron	3991065	3991183	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	CDS	3991184	3991493	1	+	1	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	exon	3991184	3991493	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	intron	3991494	3991581	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	CDS	3991582	3991685	1	+	0	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	exon	3991582	3991685	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	intron	3991686	3991871	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	CDS	3991872	3991989	1	+	1	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	exon	3991872	3991989	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	intron	3991990	3992137	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	CDS	3992138	3992257	1	+	0	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	exon	3992138	3992257	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	intron	3992258	3992433	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	CDS	3992434	3992691	1	+	0	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	exon	3992434	3992691	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	intron	3992692	3992780	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	CDS	3992781	3992903	1	+	0	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	exon	3992781	3992903	.	+	.	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
Ledus.S4	AUGUSTUS	stop_codon	3992904	3992906	.	+	0	transcript_id "Ledus.S4G055000.t1"; gene_id "Ledus.S4G055000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9120.t1 is derived from g10150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4682430	4684569	.	-	.	Ledus.S3G059700
Ledus.S3	AUGUSTUS	transcript	4682430	4684569	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	stop_codon	4682427	4682429	.	-	0	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	CDS	4682430	4682722	1	-	2	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	exon	4682430	4682722	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	intron	4682723	4682812	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	CDS	4682813	4682870	1	-	0	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	exon	4682813	4682870	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	intron	4682871	4682961	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	CDS	4682962	4683137	1	-	2	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	exon	4682962	4683137	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	intron	4683138	4683238	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	CDS	4683239	4683296	1	-	0	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	exon	4683239	4683296	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	intron	4683297	4683428	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	CDS	4683429	4683533	1	-	0	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	exon	4683429	4683533	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	intron	4683534	4683614	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	CDS	4683615	4683672	1	-	1	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	exon	4683615	4683672	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	intron	4683673	4683868	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	CDS	4683869	4683955	1	-	1	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	exon	4683869	4683955	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	intron	4683956	4684153	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	CDS	4684154	4684281	1	-	0	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	exon	4684154	4684281	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	intron	4684282	4684381	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	CDS	4684382	4684391	0.93	-	1	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	exon	4684382	4684391	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	intron	4684392	4684483	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	CDS	4684484	4684569	0.64	-	0	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	exon	4684484	4684569	.	-	.	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
Ledus.S3	AUGUSTUS	start_codon	4684567	4684569	.	-	0	transcript_id "Ledus.S3G059700.t1"; gene_id "Ledus.S3G059700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6117.t1 is derived from g3560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28984726	28985154	.	+	.	Ledus.S1G353800
Ledus.S1	AUGUSTUS	transcript	28984726	28985154	.	+	.	transcript_id "Ledus.S1G353800.t1"; gene_id "Ledus.S1G353800"
Ledus.S1	AUGUSTUS	start_codon	28984726	28984728	.	+	0	transcript_id "Ledus.S1G353800.t1"; gene_id "Ledus.S1G353800"
Ledus.S1	AUGUSTUS	CDS	28984726	28985154	0.51	+	0	transcript_id "Ledus.S1G353800.t1"; gene_id "Ledus.S1G353800"
Ledus.S1	AUGUSTUS	exon	28984726	28985154	.	+	.	transcript_id "Ledus.S1G353800.t1"; gene_id "Ledus.S1G353800"
Ledus.S1	AUGUSTUS	stop_codon	28985155	28985157	.	+	0	transcript_id "Ledus.S1G353800.t1"; gene_id "Ledus.S1G353800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7963.t1 is derived from g12634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8256316	8258341	.	-	.	Ledus.S5G074100
Ledus.S5	AUGUSTUS	transcript	8256316	8258341	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	stop_codon	8256313	8256315	.	-	0	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	CDS	8256316	8256373	1	-	1	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	exon	8256316	8256373	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	intron	8256374	8256548	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	CDS	8256549	8256607	0.74	-	0	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	exon	8256549	8256607	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	intron	8256608	8256730	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	CDS	8256731	8256833	1	-	1	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	exon	8256731	8256833	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	intron	8256834	8256906	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	CDS	8256907	8256986	1	-	0	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	exon	8256907	8256986	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	intron	8256987	8257069	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	CDS	8257070	8257152	1	-	2	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	exon	8257070	8257152	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	intron	8257153	8257278	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	CDS	8257279	8257327	1	-	0	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	exon	8257279	8257327	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	intron	8257328	8257420	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	CDS	8257421	8257486	1	-	0	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	exon	8257421	8257486	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	intron	8257487	8257752	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	CDS	8257753	8257927	1	-	1	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	exon	8257753	8257927	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	intron	8257928	8258052	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	CDS	8258053	8258086	1	-	2	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	exon	8258053	8258086	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	intron	8258087	8258256	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	CDS	8258257	8258341	1	-	0	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	exon	8258257	8258341	.	-	.	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
Ledus.S5	AUGUSTUS	start_codon	8258339	8258341	.	-	0	transcript_id "Ledus.S5G074100.t1"; gene_id "Ledus.S5G074100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4343.t1 is derived from g1779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16482544	16484414	.	+	.	Ledus.S1G176400
Ledus.S1	AUGUSTUS	transcript	16482544	16484414	.	+	.	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	start_codon	16482544	16482546	.	+	0	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	CDS	16482544	16482625	0.76	+	0	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	exon	16482544	16482625	.	+	.	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	intron	16482626	16482728	.	+	.	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	CDS	16482729	16483816	0.96	+	2	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	exon	16482729	16483816	.	+	.	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	intron	16483817	16483887	.	+	.	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	CDS	16483888	16484002	1	+	0	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	exon	16483888	16484002	.	+	.	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	intron	16484003	16484085	.	+	.	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	CDS	16484086	16484414	0.99	+	2	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	exon	16484086	16484414	.	+	.	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
Ledus.S1	AUGUSTUS	stop_codon	16484415	16484417	.	+	0	transcript_id "Ledus.S1G176400.t1"; gene_id "Ledus.S1G176400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7481.t1 is derived from g12152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3121933	3122169	.	-	.	Ledus.S5G025900
Ledus.S5	AUGUSTUS	transcript	3121933	3122169	.	-	.	transcript_id "Ledus.S5G025900.t1"; gene_id "Ledus.S5G025900"
Ledus.S5	AUGUSTUS	stop_codon	3121930	3121932	.	-	0	transcript_id "Ledus.S5G025900.t1"; gene_id "Ledus.S5G025900"
Ledus.S5	AUGUSTUS	CDS	3121933	3122169	0.35	-	0	transcript_id "Ledus.S5G025900.t1"; gene_id "Ledus.S5G025900"
Ledus.S5	AUGUSTUS	exon	3121933	3122169	.	-	.	transcript_id "Ledus.S5G025900.t1"; gene_id "Ledus.S5G025900"
Ledus.S5	AUGUSTUS	start_codon	3122167	3122169	.	-	0	transcript_id "Ledus.S5G025900.t1"; gene_id "Ledus.S5G025900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5698.t1 is derived from g3137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26004332	26004927	.	+	.	Ledus.S1G311900
Ledus.S1	AUGUSTUS	transcript	26004332	26004927	.	+	.	transcript_id "Ledus.S1G311900.t1"; gene_id "Ledus.S1G311900"
Ledus.S1	AUGUSTUS	start_codon	26004332	26004334	.	+	0	transcript_id "Ledus.S1G311900.t1"; gene_id "Ledus.S1G311900"
Ledus.S1	AUGUSTUS	CDS	26004332	26004374	0.74	+	0	transcript_id "Ledus.S1G311900.t1"; gene_id "Ledus.S1G311900"
Ledus.S1	AUGUSTUS	exon	26004332	26004374	.	+	.	transcript_id "Ledus.S1G311900.t1"; gene_id "Ledus.S1G311900"
Ledus.S1	AUGUSTUS	intron	26004375	26004533	.	+	.	transcript_id "Ledus.S1G311900.t1"; gene_id "Ledus.S1G311900"
Ledus.S1	AUGUSTUS	CDS	26004534	26004637	0.46	+	2	transcript_id "Ledus.S1G311900.t1"; gene_id "Ledus.S1G311900"
Ledus.S1	AUGUSTUS	exon	26004534	26004637	.	+	.	transcript_id "Ledus.S1G311900.t1"; gene_id "Ledus.S1G311900"
Ledus.S1	AUGUSTUS	intron	26004638	26004849	.	+	.	transcript_id "Ledus.S1G311900.t1"; gene_id "Ledus.S1G311900"
Ledus.S1	AUGUSTUS	CDS	26004850	26004927	0.92	+	0	transcript_id "Ledus.S1G311900.t1"; gene_id "Ledus.S1G311900"
Ledus.S1	AUGUSTUS	exon	26004850	26004927	.	+	.	transcript_id "Ledus.S1G311900.t1"; gene_id "Ledus.S1G311900"
Ledus.S1	AUGUSTUS	stop_codon	26004928	26004930	.	+	0	transcript_id "Ledus.S1G311900.t1"; gene_id "Ledus.S1G311900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9135.t1 is derived from g10165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4783673	4786564	.	-	.	Ledus.S3G061200
Ledus.S3	AUGUSTUS	transcript	4783673	4786564	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	stop_codon	4783670	4783672	.	-	0	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	CDS	4783673	4783915	1	-	0	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	exon	4783673	4783915	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	intron	4783916	4784069	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	CDS	4784070	4784162	1	-	0	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	exon	4784070	4784162	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	intron	4784163	4784260	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	CDS	4784261	4784335	1	-	0	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	exon	4784261	4784335	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	intron	4784336	4784455	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	CDS	4784456	4784539	0.99	-	0	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	exon	4784456	4784539	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	intron	4784540	4784633	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	CDS	4784634	4784713	1	-	2	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	exon	4784634	4784713	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	intron	4784714	4784851	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	CDS	4784852	4784996	0.53	-	0	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	exon	4784852	4784996	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	intron	4784997	4785361	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	CDS	4785362	4785944	0.23	-	1	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	exon	4785362	4785944	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	intron	4785945	4786039	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	CDS	4786040	4786100	0.93	-	2	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	exon	4786040	4786100	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	intron	4786101	4786252	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	CDS	4786253	4786329	0.45	-	1	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	exon	4786253	4786329	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	intron	4786330	4786409	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	CDS	4786410	4786564	0.36	-	0	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	exon	4786410	4786564	.	-	.	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
Ledus.S3	AUGUSTUS	start_codon	4786562	4786564	.	-	0	transcript_id "Ledus.S3G061200.t1"; gene_id "Ledus.S3G061200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1793.t1 is derived from g8656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12628330	12629320	.	+	.	Ledus.S2G167500
Ledus.S2	AUGUSTUS	transcript	12628330	12629320	.	+	.	transcript_id "Ledus.S2G167500.t1"; gene_id "Ledus.S2G167500"
Ledus.S2	AUGUSTUS	start_codon	12628330	12628332	.	+	0	transcript_id "Ledus.S2G167500.t1"; gene_id "Ledus.S2G167500"
Ledus.S2	AUGUSTUS	CDS	12628330	12628571	0.2	+	0	transcript_id "Ledus.S2G167500.t1"; gene_id "Ledus.S2G167500"
Ledus.S2	AUGUSTUS	exon	12628330	12628571	.	+	.	transcript_id "Ledus.S2G167500.t1"; gene_id "Ledus.S2G167500"
Ledus.S2	AUGUSTUS	intron	12628572	12628732	.	+	.	transcript_id "Ledus.S2G167500.t1"; gene_id "Ledus.S2G167500"
Ledus.S2	AUGUSTUS	CDS	12628733	12628816	0.12	+	1	transcript_id "Ledus.S2G167500.t1"; gene_id "Ledus.S2G167500"
Ledus.S2	AUGUSTUS	exon	12628733	12628816	.	+	.	transcript_id "Ledus.S2G167500.t1"; gene_id "Ledus.S2G167500"
Ledus.S2	AUGUSTUS	intron	12628817	12629121	.	+	.	transcript_id "Ledus.S2G167500.t1"; gene_id "Ledus.S2G167500"
Ledus.S2	AUGUSTUS	CDS	12629122	12629320	0.5	+	1	transcript_id "Ledus.S2G167500.t1"; gene_id "Ledus.S2G167500"
Ledus.S2	AUGUSTUS	exon	12629122	12629320	.	+	.	transcript_id "Ledus.S2G167500.t1"; gene_id "Ledus.S2G167500"
Ledus.S2	AUGUSTUS	stop_codon	12629321	12629323	.	+	0	transcript_id "Ledus.S2G167500.t1"; gene_id "Ledus.S2G167500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg591.t1 is derived from g7452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3527018	3528176	.	+	.	Ledus.S2G047300
Ledus.S2	AUGUSTUS	transcript	3527018	3528176	.	+	.	transcript_id "Ledus.S2G047300.t1"; gene_id "Ledus.S2G047300"
Ledus.S2	AUGUSTUS	start_codon	3527018	3527020	.	+	0	transcript_id "Ledus.S2G047300.t1"; gene_id "Ledus.S2G047300"
Ledus.S2	AUGUSTUS	CDS	3527018	3527153	0.89	+	0	transcript_id "Ledus.S2G047300.t1"; gene_id "Ledus.S2G047300"
Ledus.S2	AUGUSTUS	exon	3527018	3527153	.	+	.	transcript_id "Ledus.S2G047300.t1"; gene_id "Ledus.S2G047300"
Ledus.S2	AUGUSTUS	intron	3527154	3527871	.	+	.	transcript_id "Ledus.S2G047300.t1"; gene_id "Ledus.S2G047300"
Ledus.S2	AUGUSTUS	CDS	3527872	3527917	1	+	2	transcript_id "Ledus.S2G047300.t1"; gene_id "Ledus.S2G047300"
Ledus.S2	AUGUSTUS	exon	3527872	3527917	.	+	.	transcript_id "Ledus.S2G047300.t1"; gene_id "Ledus.S2G047300"
Ledus.S2	AUGUSTUS	intron	3527918	3528010	.	+	.	transcript_id "Ledus.S2G047300.t1"; gene_id "Ledus.S2G047300"
Ledus.S2	AUGUSTUS	CDS	3528011	3528176	1	+	1	transcript_id "Ledus.S2G047300.t1"; gene_id "Ledus.S2G047300"
Ledus.S2	AUGUSTUS	exon	3528011	3528176	.	+	.	transcript_id "Ledus.S2G047300.t1"; gene_id "Ledus.S2G047300"
Ledus.S2	AUGUSTUS	stop_codon	3528177	3528179	.	+	0	transcript_id "Ledus.S2G047300.t1"; gene_id "Ledus.S2G047300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg871.t1 is derived from g7732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5910505	5915053	.	-	.	Ledus.S2G075300
Ledus.S2	AUGUSTUS	transcript	5910505	5915053	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	stop_codon	5910502	5910504	.	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5910505	5910679	1	-	1	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5910505	5910679	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5910680	5910758	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5910759	5910843	1	-	2	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5910759	5910843	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5910844	5910936	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5910937	5911045	1	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5910937	5911045	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5911046	5911166	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5911167	5911268	1	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5911167	5911268	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5911269	5911359	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5911360	5911435	1	-	1	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5911360	5911435	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5911436	5911519	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5911520	5911599	1	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5911520	5911599	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5911600	5911676	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5911677	5911799	1	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5911677	5911799	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5911800	5911932	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5911933	5912001	1	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5911933	5912001	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5912002	5912080	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5912081	5912263	0.75	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5912081	5912263	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5912264	5912373	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5912374	5912449	1	-	1	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5912374	5912449	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5912450	5912534	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5912535	5912590	1	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5912535	5912590	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5912591	5912696	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5912697	5912807	1	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5912697	5912807	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5912808	5912889	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5912890	5913012	1	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5912890	5913012	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5913013	5913106	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5913107	5913211	1	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5913107	5913211	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5913212	5913293	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5913294	5913591	1	-	1	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5913294	5913591	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5913592	5913754	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5913755	5914513	1	-	1	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5913755	5914513	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	intron	5914514	5914622	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	CDS	5914623	5915053	1	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	exon	5914623	5915053	.	-	.	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
Ledus.S2	AUGUSTUS	start_codon	5915051	5915053	.	-	0	transcript_id "Ledus.S2G075300.t1"; gene_id "Ledus.S2G075300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5038.t1 is derived from g2477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21245599	21249181	.	+	.	Ledus.S1G245900
Ledus.S1	AUGUSTUS	transcript	21245599	21249181	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	start_codon	21245599	21245601	.	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21245599	21245646	0.99	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21245599	21245646	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21245647	21245758	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21245759	21245800	0.69	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21245759	21245800	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21245801	21245986	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21245987	21246239	1	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21245987	21246239	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21246240	21246443	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21246444	21246510	1	+	2	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21246444	21246510	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21246511	21246634	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21246635	21246728	0.89	+	1	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21246635	21246728	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21246729	21246827	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21246828	21246914	0.73	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21246828	21246914	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21246915	21247019	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21247020	21247166	1	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21247020	21247166	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21247167	21247322	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21247323	21247436	1	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21247323	21247436	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21247437	21247651	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21247652	21247736	0.98	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21247652	21247736	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21247737	21247846	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21247847	21247899	0.98	+	2	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21247847	21247899	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21247900	21248089	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21248090	21248292	1	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21248090	21248292	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21248293	21248382	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21248383	21248449	1	+	1	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21248383	21248449	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21248450	21248524	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21248525	21248593	1	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21248525	21248593	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21248594	21248691	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21248692	21248820	0.94	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21248692	21248820	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21248821	21248928	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21248929	21249038	0.91	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21248929	21249038	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	intron	21249039	21249126	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	CDS	21249127	21249181	1	+	1	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	exon	21249127	21249181	.	+	.	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
Ledus.S1	AUGUSTUS	stop_codon	21249182	21249184	.	+	0	transcript_id "Ledus.S1G245900.t1"; gene_id "Ledus.S1G245900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg75.t1 is derived from g9488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	256295	257115	.	-	.	Ledus.C8G003500
Ledus.C8	AUGUSTUS	transcript	256295	257110	.	-	.	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	stop_codon	256292	256294	.	-	0	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	CDS	256295	256323	0.94	-	2	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	exon	256295	256323	.	-	.	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	intron	256324	256527	.	-	.	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	CDS	256528	256576	0.94	-	0	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	exon	256528	256576	.	-	.	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	intron	256577	256673	.	-	.	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	CDS	256674	256897	0.94	-	2	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	exon	256674	256897	.	-	.	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	intron	256898	256980	.	-	.	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	CDS	256981	257110	1	-	0	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	exon	256981	257110	.	-	.	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	start_codon	257108	257110	.	-	0	transcript_id "Ledus.C8G003500.t1"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	transcript	256295	257115	.	-	.	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	stop_codon	256292	256294	.	-	0	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	CDS	256295	256323	0.93	-	2	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	exon	256295	256323	.	-	.	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	intron	256324	256527	.	-	.	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	CDS	256528	256576	0.93	-	0	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	exon	256528	256576	.	-	.	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	intron	256577	256673	.	-	.	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	CDS	256674	256829	0.93	-	0	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	exon	256674	256829	.	-	.	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	intron	256830	256980	.	-	.	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	CDS	256981	257115	1	-	0	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	exon	256981	257115	.	-	.	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
Ledus.C8	AUGUSTUS	start_codon	257113	257115	.	-	0	transcript_id "Ledus.C8G003500.t2"; gene_id "Ledus.C8G003500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9572.t1 is derived from g10602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7873436	7875892	.	-	.	Ledus.S3G104900
Ledus.S3	AUGUSTUS	transcript	7873436	7875892	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	stop_codon	7873433	7873435	.	-	0	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	CDS	7873436	7873668	0.45	-	2	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	exon	7873436	7873668	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	intron	7873669	7873761	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	CDS	7873762	7873943	1	-	1	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	exon	7873762	7873943	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	intron	7873944	7874068	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	CDS	7874069	7874177	0.99	-	2	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	exon	7874069	7874177	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	intron	7874178	7874291	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	CDS	7874292	7874485	0.97	-	1	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	exon	7874292	7874485	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	intron	7874486	7874624	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	CDS	7874625	7874812	1	-	0	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	exon	7874625	7874812	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	intron	7874813	7874909	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	CDS	7874910	7875002	1	-	0	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	exon	7874910	7875002	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	intron	7875003	7875134	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	CDS	7875135	7875196	0.58	-	2	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	exon	7875135	7875196	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	intron	7875197	7875322	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	CDS	7875323	7875365	0.59	-	0	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	exon	7875323	7875365	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	intron	7875366	7875572	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	CDS	7875573	7875743	1	-	0	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	exon	7875573	7875743	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	intron	7875744	7875874	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	CDS	7875875	7875892	1	-	0	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	exon	7875875	7875892	.	-	.	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
Ledus.S3	AUGUSTUS	start_codon	7875890	7875892	.	-	0	transcript_id "Ledus.S3G104900.t1"; gene_id "Ledus.S3G104900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7538.t1 is derived from g12209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3730572	3732322	.	-	.	Ledus.S5G031600
Ledus.S5	AUGUSTUS	transcript	3730572	3732322	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	stop_codon	3730569	3730571	.	-	0	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	CDS	3730572	3730879	0.99	-	2	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	exon	3730572	3730879	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	intron	3730880	3730962	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	CDS	3730963	3731161	0.95	-	0	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	exon	3730963	3731161	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	intron	3731162	3731242	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	CDS	3731243	3731385	1	-	2	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	exon	3731243	3731385	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	intron	3731386	3731471	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	CDS	3731472	3731605	0.79	-	1	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	exon	3731472	3731605	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	intron	3731606	3731692	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	CDS	3731693	3731837	1	-	2	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	exon	3731693	3731837	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	intron	3731838	3731928	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	CDS	3731929	3732097	0.98	-	0	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	exon	3731929	3732097	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	intron	3732098	3732169	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	CDS	3732170	3732322	0.91	-	0	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	exon	3732170	3732322	.	-	.	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
Ledus.S5	AUGUSTUS	start_codon	3732320	3732322	.	-	0	transcript_id "Ledus.S5G031600.t1"; gene_id "Ledus.S5G031600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4423.t1 is derived from g1859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17041284	17043978	.	+	.	Ledus.S1G184400
Ledus.S1	AUGUSTUS	transcript	17041284	17043978	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	start_codon	17041284	17041286	.	+	0	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	CDS	17041284	17041407	0.91	+	0	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	exon	17041284	17041407	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	intron	17041408	17041573	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	CDS	17041574	17041657	1	+	2	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	exon	17041574	17041657	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	intron	17041658	17041733	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	CDS	17041734	17041991	0.79	+	2	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	exon	17041734	17041991	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	intron	17041992	17042084	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	CDS	17042085	17042243	0.79	+	2	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	exon	17042085	17042243	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	intron	17042244	17042327	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	CDS	17042328	17042457	1	+	2	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	exon	17042328	17042457	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	intron	17042458	17042613	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	CDS	17042614	17042785	0.97	+	1	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	exon	17042614	17042785	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	intron	17042786	17042895	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	CDS	17042896	17043024	1	+	0	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	exon	17042896	17043024	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	intron	17043025	17043241	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	CDS	17043242	17043436	1	+	0	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	exon	17043242	17043436	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	intron	17043437	17043624	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	CDS	17043625	17043747	1	+	0	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	exon	17043625	17043747	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	intron	17043748	17043852	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	CDS	17043853	17043978	0.98	+	0	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	exon	17043853	17043978	.	+	.	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
Ledus.S1	AUGUSTUS	stop_codon	17043979	17043981	.	+	0	transcript_id "Ledus.S1G184400.t1"; gene_id "Ledus.S1G184400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12783.t1 is derived from g6405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14453142	14458608	.	+	.	Ledus.S4G193900
Ledus.S4	AUGUSTUS	transcript	14453142	14458608	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	start_codon	14453142	14453144	.	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14453142	14453347	1	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14453142	14453347	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14453348	14453425	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14453426	14453642	1	+	1	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14453426	14453642	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14453643	14453905	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14453906	14453990	1	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14453906	14453990	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14453991	14454178	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14454179	14455280	1	+	2	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14454179	14455280	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14455281	14455430	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14455431	14455482	1	+	1	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14455431	14455482	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14455483	14455571	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14455572	14455694	1	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14455572	14455694	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14455695	14455801	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14455802	14455877	1	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14455802	14455877	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14455878	14456341	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14456342	14456526	1	+	2	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14456342	14456526	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14456527	14456947	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14456948	14457142	1	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14456948	14457142	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14457143	14457230	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14457231	14457302	1	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14457231	14457302	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14457303	14457384	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14457385	14457591	1	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14457385	14457591	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14457592	14457675	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14457676	14457801	1	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14457676	14457801	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14457802	14457892	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14457893	14458042	1	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14457893	14458042	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14458043	14458127	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14458128	14458189	1	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14458128	14458189	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14458190	14458266	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14458267	14458342	1	+	1	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14458267	14458342	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	intron	14458343	14458431	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	CDS	14458432	14458608	0.71	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	exon	14458432	14458608	.	+	.	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
Ledus.S4	AUGUSTUS	stop_codon	14458609	14458611	.	+	0	transcript_id "Ledus.S4G193900.t1"; gene_id "Ledus.S4G193900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9099.t1 is derived from g10129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4571836	4573780	.	+	.	Ledus.S3G057600
Ledus.S3	AUGUSTUS	transcript	4571836	4573780	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	start_codon	4571836	4571838	.	+	0	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	CDS	4571836	4572297	0.45	+	0	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	exon	4571836	4572297	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	intron	4572298	4572370	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	CDS	4572371	4572415	1	+	0	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	exon	4572371	4572415	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	intron	4572416	4572548	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	CDS	4572549	4572699	1	+	0	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	exon	4572549	4572699	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	intron	4572700	4572806	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	CDS	4572807	4572867	1	+	2	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	exon	4572807	4572867	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	intron	4572868	4572977	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	CDS	4572978	4573026	0.97	+	1	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	exon	4572978	4573026	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	intron	4573027	4573150	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	CDS	4573151	4573248	0.99	+	0	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	exon	4573151	4573248	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	intron	4573249	4573350	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	CDS	4573351	4573489	0.68	+	1	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	exon	4573351	4573489	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	intron	4573490	4573600	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	CDS	4573601	4573780	1	+	0	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	exon	4573601	4573780	.	+	.	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
Ledus.S3	AUGUSTUS	stop_codon	4573781	4573783	.	+	0	transcript_id "Ledus.S3G057600.t1"; gene_id "Ledus.S3G057600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9247.t1 is derived from g10277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5603167	5607365	.	-	.	Ledus.S3G072400
Ledus.S3	AUGUSTUS	transcript	5603167	5607365	.	-	.	transcript_id "Ledus.S3G072400.t1"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	stop_codon	5603164	5603166	.	-	0	transcript_id "Ledus.S3G072400.t1"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	CDS	5603167	5604020	0.97	-	2	transcript_id "Ledus.S3G072400.t1"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	exon	5603167	5604020	.	-	.	transcript_id "Ledus.S3G072400.t1"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	intron	5604021	5604202	.	-	.	transcript_id "Ledus.S3G072400.t1"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	CDS	5604203	5607365	0.59	-	0	transcript_id "Ledus.S3G072400.t1"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	exon	5604203	5607365	.	-	.	transcript_id "Ledus.S3G072400.t1"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	start_codon	5607363	5607365	.	-	0	transcript_id "Ledus.S3G072400.t1"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	transcript	5603167	5605262	.	-	.	transcript_id "Ledus.S3G072400.t2"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	stop_codon	5603164	5603166	.	-	0	transcript_id "Ledus.S3G072400.t2"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	CDS	5603167	5604020	0.96	-	2	transcript_id "Ledus.S3G072400.t2"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	exon	5603167	5604020	.	-	.	transcript_id "Ledus.S3G072400.t2"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	intron	5604021	5604202	.	-	.	transcript_id "Ledus.S3G072400.t2"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	CDS	5604203	5605262	0.45	-	0	transcript_id "Ledus.S3G072400.t2"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	exon	5604203	5605262	.	-	.	transcript_id "Ledus.S3G072400.t2"; gene_id "Ledus.S3G072400"
Ledus.S3	AUGUSTUS	start_codon	5605260	5605262	.	-	0	transcript_id "Ledus.S3G072400.t2"; gene_id "Ledus.S3G072400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12143.t1 is derived from g5762.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9787552	9788043	.	+	.	Ledus.S4G129900
Ledus.S4	AUGUSTUS	transcript	9787552	9788043	.	+	.	transcript_id "Ledus.S4G129900.t1"; gene_id "Ledus.S4G129900"
Ledus.S4	AUGUSTUS	start_codon	9787552	9787554	.	+	0	transcript_id "Ledus.S4G129900.t1"; gene_id "Ledus.S4G129900"
Ledus.S4	AUGUSTUS	CDS	9787552	9788043	0.39	+	0	transcript_id "Ledus.S4G129900.t1"; gene_id "Ledus.S4G129900"
Ledus.S4	AUGUSTUS	exon	9787552	9788043	.	+	.	transcript_id "Ledus.S4G129900.t1"; gene_id "Ledus.S4G129900"
Ledus.S4	AUGUSTUS	stop_codon	9788044	9788046	.	+	0	transcript_id "Ledus.S4G129900.t1"; gene_id "Ledus.S4G129900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6572.t1 is derived from g4015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32450044	32451468	.	+	.	Ledus.S1G399300
Ledus.S1	AUGUSTUS	transcript	32450044	32451468	.	+	.	transcript_id "Ledus.S1G399300.t1"; gene_id "Ledus.S1G399300"
Ledus.S1	AUGUSTUS	start_codon	32450044	32450046	.	+	0	transcript_id "Ledus.S1G399300.t1"; gene_id "Ledus.S1G399300"
Ledus.S1	AUGUSTUS	CDS	32450044	32451468	0.97	+	0	transcript_id "Ledus.S1G399300.t1"; gene_id "Ledus.S1G399300"
Ledus.S1	AUGUSTUS	exon	32450044	32451468	.	+	.	transcript_id "Ledus.S1G399300.t1"; gene_id "Ledus.S1G399300"
Ledus.S1	AUGUSTUS	stop_codon	32451469	32451471	.	+	0	transcript_id "Ledus.S1G399300.t1"; gene_id "Ledus.S1G399300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6046.t1 is derived from g3489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28664889	28665417	.	+	.	Ledus.S1G346700
Ledus.S1	AUGUSTUS	transcript	28664889	28665417	.	+	.	transcript_id "Ledus.S1G346700.t1"; gene_id "Ledus.S1G346700"
Ledus.S1	AUGUSTUS	start_codon	28664889	28664891	.	+	0	transcript_id "Ledus.S1G346700.t1"; gene_id "Ledus.S1G346700"
Ledus.S1	AUGUSTUS	CDS	28664889	28664935	0.95	+	0	transcript_id "Ledus.S1G346700.t1"; gene_id "Ledus.S1G346700"
Ledus.S1	AUGUSTUS	exon	28664889	28664935	.	+	.	transcript_id "Ledus.S1G346700.t1"; gene_id "Ledus.S1G346700"
Ledus.S1	AUGUSTUS	intron	28664936	28665126	.	+	.	transcript_id "Ledus.S1G346700.t1"; gene_id "Ledus.S1G346700"
Ledus.S1	AUGUSTUS	CDS	28665127	28665238	0.8	+	1	transcript_id "Ledus.S1G346700.t1"; gene_id "Ledus.S1G346700"
Ledus.S1	AUGUSTUS	exon	28665127	28665238	.	+	.	transcript_id "Ledus.S1G346700.t1"; gene_id "Ledus.S1G346700"
Ledus.S1	AUGUSTUS	intron	28665239	28665366	.	+	.	transcript_id "Ledus.S1G346700.t1"; gene_id "Ledus.S1G346700"
Ledus.S1	AUGUSTUS	CDS	28665367	28665417	0.8	+	0	transcript_id "Ledus.S1G346700.t1"; gene_id "Ledus.S1G346700"
Ledus.S1	AUGUSTUS	exon	28665367	28665417	.	+	.	transcript_id "Ledus.S1G346700.t1"; gene_id "Ledus.S1G346700"
Ledus.S1	AUGUSTUS	stop_codon	28665418	28665420	.	+	0	transcript_id "Ledus.S1G346700.t1"; gene_id "Ledus.S1G346700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9181.t1 is derived from g10211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5264835	5267201	.	+	.	Ledus.S3G065800
Ledus.S3	AUGUSTUS	transcript	5264835	5267201	.	+	.	transcript_id "Ledus.S3G065800.t1"; gene_id "Ledus.S3G065800"
Ledus.S3	AUGUSTUS	start_codon	5264835	5264837	.	+	0	transcript_id "Ledus.S3G065800.t1"; gene_id "Ledus.S3G065800"
Ledus.S3	AUGUSTUS	CDS	5264835	5267201	0.54	+	0	transcript_id "Ledus.S3G065800.t1"; gene_id "Ledus.S3G065800"
Ledus.S3	AUGUSTUS	exon	5264835	5267201	.	+	.	transcript_id "Ledus.S3G065800.t1"; gene_id "Ledus.S3G065800"
Ledus.S3	AUGUSTUS	stop_codon	5267202	5267204	.	+	0	transcript_id "Ledus.S3G065800.t1"; gene_id "Ledus.S3G065800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg623.t1 is derived from g7484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3721329	3722186	.	+	.	Ledus.S2G050500
Ledus.S2	AUGUSTUS	transcript	3721329	3722186	.	+	.	transcript_id "Ledus.S2G050500.t1"; gene_id "Ledus.S2G050500"
Ledus.S2	AUGUSTUS	start_codon	3721329	3721331	.	+	0	transcript_id "Ledus.S2G050500.t1"; gene_id "Ledus.S2G050500"
Ledus.S2	AUGUSTUS	CDS	3721329	3722186	0.99	+	0	transcript_id "Ledus.S2G050500.t1"; gene_id "Ledus.S2G050500"
Ledus.S2	AUGUSTUS	exon	3721329	3722186	.	+	.	transcript_id "Ledus.S2G050500.t1"; gene_id "Ledus.S2G050500"
Ledus.S2	AUGUSTUS	stop_codon	3722187	3722189	.	+	0	transcript_id "Ledus.S2G050500.t1"; gene_id "Ledus.S2G050500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg19.t1 is derived from g2.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C23	AUGUSTUS	gene	34402	34611	.	-	.	Ledus.C23G000100
Ledus.C23	AUGUSTUS	transcript	34402	34611	.	-	.	transcript_id "Ledus.C23G000100.t1"; gene_id "Ledus.C23G000100"
Ledus.C23	AUGUSTUS	stop_codon	34399	34401	.	-	0	transcript_id "Ledus.C23G000100.t1"; gene_id "Ledus.C23G000100"
Ledus.C23	AUGUSTUS	CDS	34402	34611	0.98	-	0	transcript_id "Ledus.C23G000100.t1"; gene_id "Ledus.C23G000100"
Ledus.C23	AUGUSTUS	exon	34402	34611	.	-	.	transcript_id "Ledus.C23G000100.t1"; gene_id "Ledus.C23G000100"
Ledus.C23	AUGUSTUS	start_codon	34609	34611	.	-	0	transcript_id "Ledus.C23G000100.t1"; gene_id "Ledus.C23G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1796.t1 is derived from g8659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12639521	12640031	.	+	.	Ledus.S2G167800
Ledus.S2	AUGUSTUS	transcript	12639521	12640031	.	+	.	transcript_id "Ledus.S2G167800.t1"; gene_id "Ledus.S2G167800"
Ledus.S2	AUGUSTUS	start_codon	12639521	12639523	.	+	0	transcript_id "Ledus.S2G167800.t1"; gene_id "Ledus.S2G167800"
Ledus.S2	AUGUSTUS	CDS	12639521	12639744	0.37	+	0	transcript_id "Ledus.S2G167800.t1"; gene_id "Ledus.S2G167800"
Ledus.S2	AUGUSTUS	exon	12639521	12639744	.	+	.	transcript_id "Ledus.S2G167800.t1"; gene_id "Ledus.S2G167800"
Ledus.S2	AUGUSTUS	intron	12639745	12639853	.	+	.	transcript_id "Ledus.S2G167800.t1"; gene_id "Ledus.S2G167800"
Ledus.S2	AUGUSTUS	CDS	12639854	12640031	0.98	+	1	transcript_id "Ledus.S2G167800.t1"; gene_id "Ledus.S2G167800"
Ledus.S2	AUGUSTUS	exon	12639854	12640031	.	+	.	transcript_id "Ledus.S2G167800.t1"; gene_id "Ledus.S2G167800"
Ledus.S2	AUGUSTUS	stop_codon	12640032	12640034	.	+	0	transcript_id "Ledus.S2G167800.t1"; gene_id "Ledus.S2G167800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6879.t1 is derived from g4323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34924669	34926354	.	-	.	Ledus.S1G430000
Ledus.S1	AUGUSTUS	transcript	34924669	34926354	.	-	.	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	stop_codon	34924666	34924668	.	-	0	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	CDS	34924669	34925310	1	-	0	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	exon	34924669	34925310	.	-	.	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	intron	34925311	34925396	.	-	.	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	CDS	34925397	34925871	1	-	1	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	exon	34925397	34925871	.	-	.	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	intron	34925872	34925958	.	-	.	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	CDS	34925959	34925995	1	-	2	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	exon	34925959	34925995	.	-	.	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	intron	34925996	34926162	.	-	.	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	CDS	34926163	34926225	0.21	-	2	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	exon	34926163	34926225	.	-	.	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	intron	34926226	34926341	.	-	.	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	CDS	34926342	34926354	0.44	-	0	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	exon	34926342	34926354	.	-	.	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
Ledus.S1	AUGUSTUS	start_codon	34926352	34926354	.	-	0	transcript_id "Ledus.S1G430000.t1"; gene_id "Ledus.S1G430000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11315.t1 is derived from g4933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3543197	3543662	.	-	.	Ledus.S4G047100
Ledus.S4	AUGUSTUS	transcript	3543197	3543662	.	-	.	transcript_id "Ledus.S4G047100.t1"; gene_id "Ledus.S4G047100"
Ledus.S4	AUGUSTUS	stop_codon	3543194	3543196	.	-	0	transcript_id "Ledus.S4G047100.t1"; gene_id "Ledus.S4G047100"
Ledus.S4	AUGUSTUS	CDS	3543197	3543440	0.72	-	1	transcript_id "Ledus.S4G047100.t1"; gene_id "Ledus.S4G047100"
Ledus.S4	AUGUSTUS	exon	3543197	3543440	.	-	.	transcript_id "Ledus.S4G047100.t1"; gene_id "Ledus.S4G047100"
Ledus.S4	AUGUSTUS	intron	3543441	3543573	.	-	.	transcript_id "Ledus.S4G047100.t1"; gene_id "Ledus.S4G047100"
Ledus.S4	AUGUSTUS	CDS	3543574	3543662	0.65	-	0	transcript_id "Ledus.S4G047100.t1"; gene_id "Ledus.S4G047100"
Ledus.S4	AUGUSTUS	exon	3543574	3543662	.	-	.	transcript_id "Ledus.S4G047100.t1"; gene_id "Ledus.S4G047100"
Ledus.S4	AUGUSTUS	start_codon	3543660	3543662	.	-	0	transcript_id "Ledus.S4G047100.t1"; gene_id "Ledus.S4G047100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8602.t1 is derived from g9632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	524317	527073	.	+	.	Ledus.S3G007900
Ledus.S3	AUGUSTUS	transcript	524317	527073	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	start_codon	524317	524319	.	+	0	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	CDS	524317	524468	0.37	+	0	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	exon	524317	524468	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	intron	524469	524537	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	CDS	524538	524610	1	+	1	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	exon	524538	524610	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	intron	524611	524716	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	CDS	524717	524873	1	+	0	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	exon	524717	524873	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	intron	524874	524998	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	CDS	524999	525097	1	+	2	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	exon	524999	525097	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	intron	525098	525186	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	CDS	525187	525284	1	+	2	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	exon	525187	525284	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	intron	525285	525376	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	CDS	525377	525582	1	+	0	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	exon	525377	525582	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	intron	525583	525658	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	CDS	525659	525783	1	+	1	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	exon	525659	525783	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	intron	525784	525867	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	CDS	525868	526247	1	+	2	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	exon	525868	526247	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	intron	526248	526639	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	CDS	526640	526845	1	+	0	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	exon	526640	526845	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	intron	526846	526925	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	CDS	526926	527073	0.99	+	1	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	exon	526926	527073	.	+	.	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
Ledus.S3	AUGUSTUS	stop_codon	527074	527076	.	+	0	transcript_id "Ledus.S3G007900.t1"; gene_id "Ledus.S3G007900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg163.t1 is derived from g7024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	415173	417581	.	-	.	Ledus.S2G004500
Ledus.S2	AUGUSTUS	transcript	415173	417581	.	-	.	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	stop_codon	415170	415172	.	-	0	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	CDS	415173	415413	0.99	-	1	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	exon	415173	415413	.	-	.	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	intron	415414	415778	.	-	.	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	CDS	415779	416333	0.95	-	1	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	exon	415779	416333	.	-	.	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	intron	416334	416424	.	-	.	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	CDS	416425	417036	0.68	-	1	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	exon	416425	417036	.	-	.	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	intron	417037	417291	.	-	.	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	CDS	417292	417458	0.87	-	0	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	exon	417292	417458	.	-	.	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	intron	417459	417548	.	-	.	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	CDS	417549	417581	0.6	-	0	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	exon	417549	417581	.	-	.	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
Ledus.S2	AUGUSTUS	start_codon	417579	417581	.	-	0	transcript_id "Ledus.S2G004500.t1"; gene_id "Ledus.S2G004500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10364.t1 is derived from g11394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14444428	14446792	.	-	.	Ledus.S3G184100
Ledus.S3	AUGUSTUS	transcript	14444428	14446792	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	stop_codon	14444425	14444427	.	-	0	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14444428	14444454	1	-	0	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14444428	14444454	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14444455	14444540	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14444541	14444633	1	-	0	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14444541	14444633	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14444634	14444724	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14444725	14444785	1	-	1	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14444725	14444785	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14444786	14444884	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14444885	14444918	0.89	-	2	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14444885	14444918	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14444919	14444982	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14444983	14445044	0.88	-	1	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14444983	14445044	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14445045	14445133	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14445134	14445171	1	-	0	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14445134	14445171	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14445172	14445262	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14445263	14445316	1	-	0	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14445263	14445316	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14445317	14445394	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14445395	14445598	1	-	0	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14445395	14445598	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14445599	14445685	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14445686	14445773	1	-	1	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14445686	14445773	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14445774	14445849	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14445850	14445956	0.98	-	0	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14445850	14445956	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14445957	14446059	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14446060	14446108	0.99	-	1	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14446060	14446108	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14446109	14446189	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14446190	14446293	1	-	0	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14446190	14446293	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14446294	14446573	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14446574	14446613	1	-	1	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14446574	14446613	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	intron	14446614	14446724	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	CDS	14446725	14446792	0.98	-	0	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	exon	14446725	14446792	.	-	.	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
Ledus.S3	AUGUSTUS	start_codon	14446790	14446792	.	-	0	transcript_id "Ledus.S3G184100.t1"; gene_id "Ledus.S3G184100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7167.t1 is derived from g6698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1931240	1933144	.	-	.	Ledus.C7G022800
Ledus.C7	AUGUSTUS	transcript	1931240	1933144	.	-	.	transcript_id "Ledus.C7G022800.t1"; gene_id "Ledus.C7G022800"
Ledus.C7	AUGUSTUS	stop_codon	1931237	1931239	.	-	0	transcript_id "Ledus.C7G022800.t1"; gene_id "Ledus.C7G022800"
Ledus.C7	AUGUSTUS	CDS	1931240	1932459	0.99	-	2	transcript_id "Ledus.C7G022800.t1"; gene_id "Ledus.C7G022800"
Ledus.C7	AUGUSTUS	exon	1931240	1932459	.	-	.	transcript_id "Ledus.C7G022800.t1"; gene_id "Ledus.C7G022800"
Ledus.C7	AUGUSTUS	intron	1932460	1932549	.	-	.	transcript_id "Ledus.C7G022800.t1"; gene_id "Ledus.C7G022800"
Ledus.C7	AUGUSTUS	CDS	1932550	1933144	0.93	-	0	transcript_id "Ledus.C7G022800.t1"; gene_id "Ledus.C7G022800"
Ledus.C7	AUGUSTUS	exon	1932550	1933144	.	-	.	transcript_id "Ledus.C7G022800.t1"; gene_id "Ledus.C7G022800"
Ledus.C7	AUGUSTUS	start_codon	1933142	1933144	.	-	0	transcript_id "Ledus.C7G022800.t1"; gene_id "Ledus.C7G022800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7297.t1 is derived from g11968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	849136	857857	.	+	.	Ledus.S5G007500
Ledus.S5	AUGUSTUS	transcript	849136	857857	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	start_codon	849136	849138	.	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	849136	850166	0.62	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	849136	850166	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	850167	850259	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	850260	850323	1	+	1	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	850260	850323	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	850324	850516	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	850517	850669	0.9	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	850517	850669	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	850670	850828	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	850829	851380	0.87	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	850829	851380	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	851381	851582	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	851583	852473	0.99	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	851583	852473	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	852474	852576	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	852577	852792	0.71	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	852577	852792	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	852793	853015	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	853016	853213	0.86	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	853016	853213	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	853214	853317	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	853318	853437	0.89	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	853318	853437	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	853438	853526	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	853527	853574	0.42	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	853527	853574	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	853575	853704	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	853705	853833	1	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	853705	853833	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	853834	853977	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	853978	854227	1	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	853978	854227	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	854228	854392	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	854393	854916	0.96	+	2	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	854393	854916	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	854917	855119	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	855120	855200	0.94	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	855120	855200	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	855201	855338	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	855339	855424	0.95	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	855339	855424	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	855425	855549	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	855550	857085	0.42	+	1	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	855550	857085	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	857086	857197	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	857198	857237	0.63	+	1	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	857198	857237	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	857238	857324	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	857325	857388	0.98	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	857325	857388	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	857389	857529	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	857530	857597	0.57	+	2	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	857530	857597	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	intron	857598	857779	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	CDS	857780	857857	0.44	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	exon	857780	857857	.	+	.	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
Ledus.S5	AUGUSTUS	stop_codon	857858	857860	.	+	0	transcript_id "Ledus.S5G007500.t1"; gene_id "Ledus.S5G007500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1685.t1 is derived from g8546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11838565	11838897	.	+	.	Ledus.S2G156700
Ledus.S2	AUGUSTUS	transcript	11838565	11838897	.	+	.	transcript_id "Ledus.S2G156700.t1"; gene_id "Ledus.S2G156700"
Ledus.S2	AUGUSTUS	start_codon	11838565	11838567	.	+	0	transcript_id "Ledus.S2G156700.t1"; gene_id "Ledus.S2G156700"
Ledus.S2	AUGUSTUS	CDS	11838565	11838897	0.52	+	0	transcript_id "Ledus.S2G156700.t1"; gene_id "Ledus.S2G156700"
Ledus.S2	AUGUSTUS	exon	11838565	11838897	.	+	.	transcript_id "Ledus.S2G156700.t1"; gene_id "Ledus.S2G156700"
Ledus.S2	AUGUSTUS	stop_codon	11838898	11838900	.	+	0	transcript_id "Ledus.S2G156700.t1"; gene_id "Ledus.S2G156700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11045.t1 is derived from g4663.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1385288	1388442	.	+	.	Ledus.S4G020100
Ledus.S4	AUGUSTUS	transcript	1385288	1388442	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	start_codon	1385288	1385290	.	+	0	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	CDS	1385288	1385514	0.94	+	0	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	exon	1385288	1385514	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	intron	1385515	1385606	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	CDS	1385607	1385676	1	+	1	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	exon	1385607	1385676	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	intron	1385677	1385832	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	CDS	1385833	1386374	1	+	0	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	exon	1385833	1386374	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	intron	1386375	1386525	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	CDS	1386526	1386865	1	+	1	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	exon	1386526	1386865	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	intron	1386866	1386983	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	CDS	1386984	1387109	0.99	+	0	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	exon	1386984	1387109	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	intron	1387110	1387224	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	CDS	1387225	1387920	0.93	+	0	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	exon	1387225	1387920	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	intron	1387921	1388003	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	CDS	1388004	1388191	1	+	0	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	exon	1388004	1388191	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	intron	1388192	1388315	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	CDS	1388316	1388442	1	+	1	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	exon	1388316	1388442	.	+	.	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
Ledus.S4	AUGUSTUS	stop_codon	1388443	1388445	.	+	0	transcript_id "Ledus.S4G020100.t1"; gene_id "Ledus.S4G020100"
# This transcript jg5486.t2 is derived from g2925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5487.t1 is derived from g2926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24499440	24503047	.	-	.	Ledus.S1G290800
Ledus.S1	AUGUSTUS	transcript	24499440	24503047	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	stop_codon	24499437	24499439	.	-	0	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	CDS	24499440	24501857	0.87	-	0	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	exon	24499440	24501857	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	intron	24501858	24501934	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	CDS	24501935	24501977	0.81	-	1	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	exon	24501935	24501977	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	intron	24501978	24502341	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	CDS	24502342	24502394	0.88	-	0	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	exon	24502342	24502394	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	intron	24502395	24502501	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	CDS	24502502	24502606	0.98	-	0	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	exon	24502502	24502606	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	intron	24502607	24502739	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	CDS	24502740	24502814	1	-	0	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	exon	24502740	24502814	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	intron	24502815	24502919	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	CDS	24502920	24502938	1	-	1	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	exon	24502920	24502938	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	intron	24502939	24503036	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	CDS	24503037	24503047	0.99	-	0	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	exon	24503037	24503047	.	-	.	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
Ledus.S1	AUGUSTUS	start_codon	24503045	24503047	.	-	0	transcript_id "Ledus.S1G290800.t1"; gene_id "Ledus.S1G290800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7832.t1 is derived from g12503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7343996	7344226	.	-	.	Ledus.S5G061000
Ledus.S5	AUGUSTUS	transcript	7343996	7344226	.	-	.	transcript_id "Ledus.S5G061000.t1"; gene_id "Ledus.S5G061000"
Ledus.S5	AUGUSTUS	stop_codon	7343993	7343995	.	-	0	transcript_id "Ledus.S5G061000.t1"; gene_id "Ledus.S5G061000"
Ledus.S5	AUGUSTUS	CDS	7343996	7344226	0.88	-	0	transcript_id "Ledus.S5G061000.t1"; gene_id "Ledus.S5G061000"
Ledus.S5	AUGUSTUS	exon	7343996	7344226	.	-	.	transcript_id "Ledus.S5G061000.t1"; gene_id "Ledus.S5G061000"
Ledus.S5	AUGUSTUS	start_codon	7344224	7344226	.	-	0	transcript_id "Ledus.S5G061000.t1"; gene_id "Ledus.S5G061000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5787.t1 is derived from g3229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26793724	26794605	.	+	.	Ledus.S1G320800
Ledus.S1	AUGUSTUS	transcript	26793724	26794605	.	+	.	transcript_id "Ledus.S1G320800.t1"; gene_id "Ledus.S1G320800"
Ledus.S1	AUGUSTUS	start_codon	26793724	26793726	.	+	0	transcript_id "Ledus.S1G320800.t1"; gene_id "Ledus.S1G320800"
Ledus.S1	AUGUSTUS	CDS	26793724	26793752	0.72	+	0	transcript_id "Ledus.S1G320800.t1"; gene_id "Ledus.S1G320800"
Ledus.S1	AUGUSTUS	exon	26793724	26793752	.	+	.	transcript_id "Ledus.S1G320800.t1"; gene_id "Ledus.S1G320800"
Ledus.S1	AUGUSTUS	intron	26793753	26793892	.	+	.	transcript_id "Ledus.S1G320800.t1"; gene_id "Ledus.S1G320800"
Ledus.S1	AUGUSTUS	CDS	26793893	26793965	0.77	+	1	transcript_id "Ledus.S1G320800.t1"; gene_id "Ledus.S1G320800"
Ledus.S1	AUGUSTUS	exon	26793893	26793965	.	+	.	transcript_id "Ledus.S1G320800.t1"; gene_id "Ledus.S1G320800"
Ledus.S1	AUGUSTUS	intron	26793966	26794041	.	+	.	transcript_id "Ledus.S1G320800.t1"; gene_id "Ledus.S1G320800"
Ledus.S1	AUGUSTUS	CDS	26794042	26794605	0.35	+	0	transcript_id "Ledus.S1G320800.t1"; gene_id "Ledus.S1G320800"
Ledus.S1	AUGUSTUS	exon	26794042	26794605	.	+	.	transcript_id "Ledus.S1G320800.t1"; gene_id "Ledus.S1G320800"
Ledus.S1	AUGUSTUS	stop_codon	26794606	26794608	.	+	0	transcript_id "Ledus.S1G320800.t1"; gene_id "Ledus.S1G320800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8115.t1 is derived from g12786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9188119	9190930	.	-	.	Ledus.S5G089300
Ledus.S5	AUGUSTUS	transcript	9188119	9190930	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	stop_codon	9188116	9188118	.	-	0	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	CDS	9188119	9188282	1	-	2	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	exon	9188119	9188282	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	intron	9188283	9188357	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	CDS	9188358	9189034	0.97	-	1	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	exon	9188358	9189034	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	intron	9189035	9189115	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	CDS	9189116	9189383	0.83	-	2	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	exon	9189116	9189383	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	intron	9189384	9189474	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	CDS	9189475	9189802	0.87	-	0	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	exon	9189475	9189802	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	intron	9189803	9189886	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	CDS	9189887	9190127	1	-	1	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	exon	9189887	9190127	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	intron	9190128	9190216	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	CDS	9190217	9190408	1	-	1	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	exon	9190217	9190408	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	intron	9190409	9190494	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	CDS	9190495	9190603	1	-	2	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	exon	9190495	9190603	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	intron	9190604	9190686	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	CDS	9190687	9190930	0.85	-	0	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	exon	9190687	9190930	.	-	.	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
Ledus.S5	AUGUSTUS	start_codon	9190928	9190930	.	-	0	transcript_id "Ledus.S5G089300.t1"; gene_id "Ledus.S5G089300"
# This transcript jg292.t2 is derived from g7153.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg293.t1 is derived from g7154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1456606	1456875	.	-	.	Ledus.S2G017500
Ledus.S2	AUGUSTUS	transcript	1456606	1456875	.	-	.	transcript_id "Ledus.S2G017500.t1"; gene_id "Ledus.S2G017500"
Ledus.S2	AUGUSTUS	stop_codon	1456603	1456605	.	-	0	transcript_id "Ledus.S2G017500.t1"; gene_id "Ledus.S2G017500"
Ledus.S2	AUGUSTUS	CDS	1456606	1456875	0.99	-	0	transcript_id "Ledus.S2G017500.t1"; gene_id "Ledus.S2G017500"
Ledus.S2	AUGUSTUS	exon	1456606	1456875	.	-	.	transcript_id "Ledus.S2G017500.t1"; gene_id "Ledus.S2G017500"
Ledus.S2	AUGUSTUS	start_codon	1456873	1456875	.	-	0	transcript_id "Ledus.S2G017500.t1"; gene_id "Ledus.S2G017500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1533.t1 is derived from g8394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10824569	10826734	.	-	.	Ledus.S2G141500
Ledus.S2	AUGUSTUS	transcript	10824569	10826734	.	-	.	transcript_id "Ledus.S2G141500.t1"; gene_id "Ledus.S2G141500"
Ledus.S2	AUGUSTUS	stop_codon	10824566	10824568	.	-	0	transcript_id "Ledus.S2G141500.t1"; gene_id "Ledus.S2G141500"
Ledus.S2	AUGUSTUS	CDS	10824569	10826734	0.72	-	0	transcript_id "Ledus.S2G141500.t1"; gene_id "Ledus.S2G141500"
Ledus.S2	AUGUSTUS	exon	10824569	10826734	.	-	.	transcript_id "Ledus.S2G141500.t1"; gene_id "Ledus.S2G141500"
Ledus.S2	AUGUSTUS	start_codon	10826732	10826734	.	-	0	transcript_id "Ledus.S2G141500.t1"; gene_id "Ledus.S2G141500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6516.t1 is derived from g3959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31826075	31834281	.	+	.	Ledus.S1G393700
Ledus.S1	AUGUSTUS	transcript	31826075	31834281	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	start_codon	31826075	31826077	.	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31826075	31826232	0.88	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31826075	31826232	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31826233	31826344	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31826345	31826468	1	+	1	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31826345	31826468	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31826469	31826567	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31826568	31826685	1	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31826568	31826685	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31826686	31826781	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31826782	31827037	0.91	+	2	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31826782	31827037	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31827038	31827142	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31827143	31827269	0.86	+	1	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31827143	31827269	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31827270	31827520	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31827521	31827598	0.99	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31827521	31827598	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31827599	31827689	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31827690	31827752	1	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31827690	31827752	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31827753	31827847	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31827848	31827895	1	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31827848	31827895	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31827896	31828032	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31828033	31828176	1	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31828033	31828176	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31828177	31828272	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31828273	31828410	0.9	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31828273	31828410	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31828411	31828525	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31828526	31828566	0.91	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31828526	31828566	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31828567	31828684	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31828685	31828776	1	+	1	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31828685	31828776	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31828777	31829363	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31829364	31829491	0.95	+	2	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31829364	31829491	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31829492	31829596	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31829597	31829665	1	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31829597	31829665	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31829666	31829877	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31829878	31829953	1	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31829878	31829953	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31829954	31830127	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31830128	31830248	1	+	2	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31830128	31830248	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31830249	31830451	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31830452	31830560	1	+	1	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31830452	31830560	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31830561	31830793	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31830794	31830875	1	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31830794	31830875	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31830876	31831080	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31831081	31831163	0.97	+	2	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31831081	31831163	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31831164	31831280	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31831281	31831400	0.99	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31831281	31831400	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31831401	31831515	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31831516	31831567	0.99	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31831516	31831567	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31831568	31831742	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31831743	31831898	0.91	+	2	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31831743	31831898	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31831899	31832063	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31832064	31832142	0.48	+	2	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31832064	31832142	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31832143	31832254	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31832255	31832336	1	+	1	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31832255	31832336	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31832337	31832434	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31832435	31832529	1	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31832435	31832529	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31832530	31832629	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31832630	31832704	1	+	1	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31832630	31832704	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31832705	31832844	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31832845	31832899	1	+	1	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31832845	31832899	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31832900	31833015	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31833016	31833135	0.99	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31833016	31833135	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31833136	31833281	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31833282	31833374	1	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31833282	31833374	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31833375	31833465	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31833466	31833611	1	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31833466	31833611	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31833612	31833736	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31833737	31833914	1	+	1	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31833737	31833914	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	intron	31833915	31834011	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	CDS	31834012	31834281	1	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	exon	31834012	31834281	.	+	.	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
Ledus.S1	AUGUSTUS	stop_codon	31834282	31834284	.	+	0	transcript_id "Ledus.S1G393700.t1"; gene_id "Ledus.S1G393700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2885.t1 is derived from g320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4397335	4397904	.	-	.	Ledus.S1G030600
Ledus.S1	AUGUSTUS	transcript	4397335	4397904	.	-	.	transcript_id "Ledus.S1G030600.t1"; gene_id "Ledus.S1G030600"
Ledus.S1	AUGUSTUS	stop_codon	4397332	4397334	.	-	0	transcript_id "Ledus.S1G030600.t1"; gene_id "Ledus.S1G030600"
Ledus.S1	AUGUSTUS	CDS	4397335	4397904	0.41	-	0	transcript_id "Ledus.S1G030600.t1"; gene_id "Ledus.S1G030600"
Ledus.S1	AUGUSTUS	exon	4397335	4397904	.	-	.	transcript_id "Ledus.S1G030600.t1"; gene_id "Ledus.S1G030600"
Ledus.S1	AUGUSTUS	start_codon	4397902	4397904	.	-	0	transcript_id "Ledus.S1G030600.t1"; gene_id "Ledus.S1G030600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8008.t1 is derived from g12679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8464566	8467991	.	+	.	Ledus.S5G078600
Ledus.S5	AUGUSTUS	transcript	8464566	8467991	.	+	.	transcript_id "Ledus.S5G078600.t1"; gene_id "Ledus.S5G078600"
Ledus.S5	AUGUSTUS	start_codon	8464566	8464568	.	+	0	transcript_id "Ledus.S5G078600.t1"; gene_id "Ledus.S5G078600"
Ledus.S5	AUGUSTUS	CDS	8464566	8467991	0.86	+	0	transcript_id "Ledus.S5G078600.t1"; gene_id "Ledus.S5G078600"
Ledus.S5	AUGUSTUS	exon	8464566	8467991	.	+	.	transcript_id "Ledus.S5G078600.t1"; gene_id "Ledus.S5G078600"
Ledus.S5	AUGUSTUS	stop_codon	8467992	8467994	.	+	0	transcript_id "Ledus.S5G078600.t1"; gene_id "Ledus.S5G078600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2010.t1 is derived from g8873.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14166157	14168024	.	+	.	Ledus.S2G189200
Ledus.S2	AUGUSTUS	transcript	14166157	14168024	.	+	.	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	start_codon	14166157	14166159	.	+	0	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	CDS	14166157	14166223	0.45	+	0	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	exon	14166157	14166223	.	+	.	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	intron	14166224	14166388	.	+	.	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	CDS	14166389	14166446	0.96	+	2	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	exon	14166389	14166446	.	+	.	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	intron	14166447	14166611	.	+	.	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	CDS	14166612	14167593	0.52	+	1	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	exon	14166612	14167593	.	+	.	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	intron	14167594	14167695	.	+	.	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	CDS	14167696	14167793	0.47	+	0	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	exon	14167696	14167793	.	+	.	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	intron	14167794	14167939	.	+	.	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	CDS	14167940	14168024	0.78	+	1	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	exon	14167940	14168024	.	+	.	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
Ledus.S2	AUGUSTUS	stop_codon	14168025	14168027	.	+	0	transcript_id "Ledus.S2G189200.t1"; gene_id "Ledus.S2G189200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8336.t1 is derived from g13008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10818122	10820342	.	-	.	Ledus.S5G111400
Ledus.S5	AUGUSTUS	transcript	10818122	10820342	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	stop_codon	10818119	10818121	.	-	0	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	CDS	10818122	10818415	1	-	0	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	exon	10818122	10818415	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	intron	10818416	10818503	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	CDS	10818504	10818711	1	-	1	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	exon	10818504	10818711	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	intron	10818712	10818789	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	CDS	10818790	10818931	1	-	2	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	exon	10818790	10818931	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	intron	10818932	10819055	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	CDS	10819056	10819656	0.99	-	0	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	exon	10819056	10819656	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	intron	10819657	10819757	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	CDS	10819758	10819826	0.98	-	0	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	exon	10819758	10819826	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	intron	10819827	10820033	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	CDS	10820034	10820213	1	-	0	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	exon	10820034	10820213	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	intron	10820214	10820288	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	CDS	10820289	10820342	0.88	-	0	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	exon	10820289	10820342	.	-	.	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	start_codon	10820340	10820342	.	-	0	transcript_id "Ledus.S5G111400.t1"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	transcript	10819855	10820342	.	-	.	transcript_id "Ledus.S5G111400.t2"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	stop_codon	10819852	10819854	.	-	0	transcript_id "Ledus.S5G111400.t2"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	CDS	10819855	10819875	0.96	-	0	transcript_id "Ledus.S5G111400.t2"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	exon	10819855	10819875	.	-	.	transcript_id "Ledus.S5G111400.t2"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	intron	10819876	10820033	.	-	.	transcript_id "Ledus.S5G111400.t2"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	CDS	10820034	10820213	0.98	-	0	transcript_id "Ledus.S5G111400.t2"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	exon	10820034	10820213	.	-	.	transcript_id "Ledus.S5G111400.t2"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	intron	10820214	10820288	.	-	.	transcript_id "Ledus.S5G111400.t2"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	CDS	10820289	10820342	0.82	-	0	transcript_id "Ledus.S5G111400.t2"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	exon	10820289	10820342	.	-	.	transcript_id "Ledus.S5G111400.t2"; gene_id "Ledus.S5G111400"
Ledus.S5	AUGUSTUS	start_codon	10820340	10820342	.	-	0	transcript_id "Ledus.S5G111400.t2"; gene_id "Ledus.S5G111400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12704.t1 is derived from g6326.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13993499	13994627	.	+	.	Ledus.S4G186000
Ledus.S4	AUGUSTUS	transcript	13993499	13994627	.	+	.	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	start_codon	13993499	13993501	.	+	0	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	CDS	13993499	13993520	0.95	+	0	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	exon	13993499	13993520	.	+	.	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	intron	13993521	13993616	.	+	.	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	CDS	13993617	13993933	0.68	+	2	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	exon	13993617	13993933	.	+	.	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	intron	13993934	13994064	.	+	.	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	CDS	13994065	13994177	0.57	+	0	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	exon	13994065	13994177	.	+	.	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	intron	13994178	13994356	.	+	.	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	CDS	13994357	13994627	0.46	+	1	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	exon	13994357	13994627	.	+	.	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
Ledus.S4	AUGUSTUS	stop_codon	13994628	13994630	.	+	0	transcript_id "Ledus.S4G186000.t1"; gene_id "Ledus.S4G186000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11514.t1 is derived from g5132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5007067	5009025	.	-	.	Ledus.S4G067000
Ledus.S4	AUGUSTUS	transcript	5007067	5009025	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	stop_codon	5007064	5007066	.	-	0	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	CDS	5007067	5007193	0.96	-	1	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	exon	5007067	5007193	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	intron	5007194	5007306	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	CDS	5007307	5007368	0.88	-	0	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	exon	5007307	5007368	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	intron	5007369	5007476	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	CDS	5007477	5007559	0.97	-	2	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	exon	5007477	5007559	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	intron	5007560	5007713	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	CDS	5007714	5007828	1	-	0	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	exon	5007714	5007828	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	intron	5007829	5008091	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	CDS	5008092	5008163	1	-	0	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	exon	5008092	5008163	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	intron	5008164	5008411	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	CDS	5008412	5008511	1	-	1	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	exon	5008412	5008511	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	intron	5008512	5008651	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	CDS	5008652	5009025	0.71	-	0	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	exon	5008652	5009025	.	-	.	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
Ledus.S4	AUGUSTUS	start_codon	5009023	5009025	.	-	0	transcript_id "Ledus.S4G067000.t1"; gene_id "Ledus.S4G067000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4324.t1 is derived from g1760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16322329	16325859	.	+	.	Ledus.S1G174500
Ledus.S1	AUGUSTUS	transcript	16322843	16325859	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	start_codon	16322843	16322845	.	+	0	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16322843	16322871	0.84	+	0	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16322843	16322871	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16322872	16323513	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16323514	16323552	1	+	1	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16323514	16323552	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16323553	16323738	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16323739	16323805	1	+	1	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16323739	16323805	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16323806	16323945	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16323946	16324019	1	+	0	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16323946	16324019	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16324020	16324224	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16324225	16324363	1	+	1	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16324225	16324363	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16324364	16324459	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16324460	16324552	1	+	0	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16324460	16324552	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16324553	16324687	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16324688	16324756	1	+	0	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16324688	16324756	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16324757	16324907	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16324908	16325048	1	+	0	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16324908	16325048	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16325049	16325217	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16325218	16325331	1	+	0	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16325218	16325331	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16325332	16325448	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16325449	16325859	0.98	+	0	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16325449	16325859	.	+	.	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	stop_codon	16325860	16325862	.	+	0	transcript_id "Ledus.S1G174500.t1"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	transcript	16322329	16325859	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	start_codon	16322329	16322331	.	+	0	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16322329	16322331	0.48	+	0	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16322329	16322331	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16322332	16322474	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16322475	16322545	0.62	+	0	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16322475	16322545	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16322546	16322741	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16322742	16322871	0.64	+	1	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16322742	16322871	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16322872	16322953	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16322954	16322976	0.98	+	0	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16322954	16322976	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16322977	16323513	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16323514	16323552	1	+	1	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16323514	16323552	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16323553	16323738	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16323739	16323805	1	+	1	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16323739	16323805	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16323806	16323945	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16323946	16324019	1	+	0	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16323946	16324019	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16324020	16324224	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16324225	16324363	1	+	1	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16324225	16324363	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16324364	16324459	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16324460	16324552	1	+	0	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16324460	16324552	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16324553	16324687	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16324688	16324756	1	+	0	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16324688	16324756	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16324757	16324907	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16324908	16325048	1	+	0	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16324908	16325048	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16325049	16325217	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16325218	16325331	1	+	0	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16325218	16325331	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	intron	16325332	16325448	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	CDS	16325449	16325859	0.99	+	0	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	exon	16325449	16325859	.	+	.	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
Ledus.S1	AUGUSTUS	stop_codon	16325860	16325862	.	+	0	transcript_id "Ledus.S1G174500.t2"; gene_id "Ledus.S1G174500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7646.t1 is derived from g12317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4802031	4803176	.	-	.	Ledus.S5G042400
Ledus.S5	AUGUSTUS	transcript	4802031	4803176	.	-	.	transcript_id "Ledus.S5G042400.t1"; gene_id "Ledus.S5G042400"
Ledus.S5	AUGUSTUS	stop_codon	4802028	4802030	.	-	0	transcript_id "Ledus.S5G042400.t1"; gene_id "Ledus.S5G042400"
Ledus.S5	AUGUSTUS	CDS	4802031	4802118	0.83	-	1	transcript_id "Ledus.S5G042400.t1"; gene_id "Ledus.S5G042400"
Ledus.S5	AUGUSTUS	exon	4802031	4802118	.	-	.	transcript_id "Ledus.S5G042400.t1"; gene_id "Ledus.S5G042400"
Ledus.S5	AUGUSTUS	intron	4802119	4802247	.	-	.	transcript_id "Ledus.S5G042400.t1"; gene_id "Ledus.S5G042400"
Ledus.S5	AUGUSTUS	CDS	4802248	4802351	0.83	-	0	transcript_id "Ledus.S5G042400.t1"; gene_id "Ledus.S5G042400"
Ledus.S5	AUGUSTUS	exon	4802248	4802351	.	-	.	transcript_id "Ledus.S5G042400.t1"; gene_id "Ledus.S5G042400"
Ledus.S5	AUGUSTUS	intron	4802352	4802522	.	-	.	transcript_id "Ledus.S5G042400.t1"; gene_id "Ledus.S5G042400"
Ledus.S5	AUGUSTUS	CDS	4802523	4803176	0.27	-	0	transcript_id "Ledus.S5G042400.t1"; gene_id "Ledus.S5G042400"
Ledus.S5	AUGUSTUS	exon	4802523	4803176	.	-	.	transcript_id "Ledus.S5G042400.t1"; gene_id "Ledus.S5G042400"
Ledus.S5	AUGUSTUS	start_codon	4803174	4803176	.	-	0	transcript_id "Ledus.S5G042400.t1"; gene_id "Ledus.S5G042400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9636.t1 is derived from g10666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8485018	8487869	.	-	.	Ledus.S3G111300
Ledus.S3	AUGUSTUS	transcript	8485018	8487869	.	-	.	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	stop_codon	8485015	8485017	.	-	0	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	CDS	8485018	8485284	0.99	-	0	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	exon	8485018	8485284	.	-	.	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	intron	8485285	8485473	.	-	.	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	CDS	8485474	8485530	1	-	0	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	exon	8485474	8485530	.	-	.	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	intron	8485531	8485626	.	-	.	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	CDS	8485627	8486543	1	-	2	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	exon	8485627	8486543	.	-	.	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	intron	8486544	8486746	.	-	.	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	CDS	8486747	8487869	0.96	-	0	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	exon	8486747	8487869	.	-	.	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
Ledus.S3	AUGUSTUS	start_codon	8487867	8487869	.	-	0	transcript_id "Ledus.S3G111300.t1"; gene_id "Ledus.S3G111300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4023.t1 is derived from g1459.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14238788	14241531	.	+	.	Ledus.S1G144400
Ledus.S1	AUGUSTUS	transcript	14238788	14241531	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	start_codon	14238788	14238790	.	+	0	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	CDS	14238788	14238933	0.95	+	0	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	exon	14238788	14238933	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	intron	14238934	14239096	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	CDS	14239097	14239185	1	+	1	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	exon	14239097	14239185	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	intron	14239186	14239270	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	CDS	14239271	14239375	1	+	2	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	exon	14239271	14239375	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	intron	14239376	14239570	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	CDS	14239571	14239633	1	+	2	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	exon	14239571	14239633	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	intron	14239634	14239711	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	CDS	14239712	14239785	1	+	2	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	exon	14239712	14239785	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	intron	14239786	14239965	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	CDS	14239966	14240617	0.99	+	0	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	exon	14239966	14240617	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	intron	14240618	14240754	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	CDS	14240755	14240904	1	+	2	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	exon	14240755	14240904	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	intron	14240905	14241039	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	CDS	14241040	14241146	1	+	2	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	exon	14241040	14241146	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	intron	14241147	14241229	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	CDS	14241230	14241304	0.97	+	0	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	exon	14241230	14241304	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	intron	14241305	14241405	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	CDS	14241406	14241531	1	+	0	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	exon	14241406	14241531	.	+	.	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
Ledus.S1	AUGUSTUS	stop_codon	14241532	14241534	.	+	0	transcript_id "Ledus.S1G144400.t1"; gene_id "Ledus.S1G144400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7663.t1 is derived from g12334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4895830	4896390	.	-	.	Ledus.S5G044100
Ledus.S5	AUGUSTUS	transcript	4895830	4896390	.	-	.	transcript_id "Ledus.S5G044100.t1"; gene_id "Ledus.S5G044100"
Ledus.S5	AUGUSTUS	stop_codon	4895827	4895829	.	-	0	transcript_id "Ledus.S5G044100.t1"; gene_id "Ledus.S5G044100"
Ledus.S5	AUGUSTUS	CDS	4895830	4896390	0.5	-	0	transcript_id "Ledus.S5G044100.t1"; gene_id "Ledus.S5G044100"
Ledus.S5	AUGUSTUS	exon	4895830	4896390	.	-	.	transcript_id "Ledus.S5G044100.t1"; gene_id "Ledus.S5G044100"
Ledus.S5	AUGUSTUS	start_codon	4896388	4896390	.	-	0	transcript_id "Ledus.S5G044100.t1"; gene_id "Ledus.S5G044100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12146.t1 is derived from g5765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9802075	9804584	.	-	.	Ledus.S4G130200
Ledus.S4	AUGUSTUS	transcript	9802075	9804584	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	stop_codon	9802072	9802074	.	-	0	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	CDS	9802075	9802179	0.51	-	0	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	exon	9802075	9802179	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	intron	9802180	9802325	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	CDS	9802326	9802417	0.34	-	2	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	exon	9802326	9802417	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	intron	9802418	9802487	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	CDS	9802488	9802543	0.38	-	1	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	exon	9802488	9802543	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	intron	9802544	9802631	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	CDS	9802632	9803022	0.61	-	2	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	exon	9802632	9803022	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	intron	9803023	9803115	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	CDS	9803116	9803271	0.99	-	2	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	exon	9803116	9803271	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	intron	9803272	9803374	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	CDS	9803375	9803503	0.82	-	2	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	exon	9803375	9803503	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	intron	9803504	9803677	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	CDS	9803678	9803765	0.92	-	0	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	exon	9803678	9803765	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	intron	9803766	9803883	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	CDS	9803884	9803973	1	-	0	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	exon	9803884	9803973	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	intron	9803974	9804109	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	CDS	9804110	9804176	1	-	1	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	exon	9804110	9804176	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	intron	9804177	9804271	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	CDS	9804272	9804396	1	-	0	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	exon	9804272	9804396	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	intron	9804397	9804479	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	CDS	9804480	9804584	0.59	-	0	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	exon	9804480	9804584	.	-	.	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
Ledus.S4	AUGUSTUS	start_codon	9804582	9804584	.	-	0	transcript_id "Ledus.S4G130200.t1"; gene_id "Ledus.S4G130200"
# This transcript jg2850.t2 is derived from g284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2851.t1 is derived from g285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4196119	4199960	.	+	.	Ledus.S1G027200
Ledus.S1	AUGUSTUS	transcript	4196119	4199960	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	start_codon	4196119	4196121	.	+	0	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	CDS	4196119	4196216	0.87	+	0	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	exon	4196119	4196216	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	intron	4196217	4196600	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	CDS	4196601	4196835	0.84	+	1	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	exon	4196601	4196835	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	intron	4196836	4196951	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	CDS	4196952	4197075	0.93	+	0	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	exon	4196952	4197075	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	intron	4197076	4197195	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	CDS	4197196	4197554	0.98	+	2	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	exon	4197196	4197554	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	intron	4197555	4197687	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	CDS	4197688	4199461	1	+	0	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	exon	4197688	4199461	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	intron	4199462	4199552	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	CDS	4199553	4199791	1	+	2	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	exon	4199553	4199791	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	intron	4199792	4199882	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	CDS	4199883	4199960	0.82	+	0	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	exon	4199883	4199960	.	+	.	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
Ledus.S1	AUGUSTUS	stop_codon	4199961	4199963	.	+	0	transcript_id "Ledus.S1G027200.t1"; gene_id "Ledus.S1G027200"
# This transcript jg4638.t2 is derived from g2075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4639.t1 is derived from g2076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18568933	18570048	.	+	.	Ledus.S1G206000
Ledus.S1	AUGUSTUS	transcript	18568933	18570048	.	+	.	transcript_id "Ledus.S1G206000.t1"; gene_id "Ledus.S1G206000"
Ledus.S1	AUGUSTUS	start_codon	18568933	18568935	.	+	0	transcript_id "Ledus.S1G206000.t1"; gene_id "Ledus.S1G206000"
Ledus.S1	AUGUSTUS	CDS	18568933	18570048	0.74	+	0	transcript_id "Ledus.S1G206000.t1"; gene_id "Ledus.S1G206000"
Ledus.S1	AUGUSTUS	exon	18568933	18570048	.	+	.	transcript_id "Ledus.S1G206000.t1"; gene_id "Ledus.S1G206000"
Ledus.S1	AUGUSTUS	stop_codon	18570049	18570051	.	+	0	transcript_id "Ledus.S1G206000.t1"; gene_id "Ledus.S1G206000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8218.t1 is derived from g12889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9993745	9994225	.	+	.	Ledus.S5G099600
Ledus.S5	AUGUSTUS	transcript	9993851	9994225	.	+	.	transcript_id "Ledus.S5G099600.t1"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	start_codon	9993851	9993853	.	+	0	transcript_id "Ledus.S5G099600.t1"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	CDS	9993851	9993858	0.82	+	0	transcript_id "Ledus.S5G099600.t1"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	exon	9993851	9993858	.	+	.	transcript_id "Ledus.S5G099600.t1"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	intron	9993859	9994011	.	+	.	transcript_id "Ledus.S5G099600.t1"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	CDS	9994012	9994225	0.81	+	1	transcript_id "Ledus.S5G099600.t1"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	exon	9994012	9994225	.	+	.	transcript_id "Ledus.S5G099600.t1"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	stop_codon	9994226	9994228	.	+	0	transcript_id "Ledus.S5G099600.t1"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	transcript	9993745	9994225	.	+	.	transcript_id "Ledus.S5G099600.t2"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	start_codon	9993745	9993747	.	+	0	transcript_id "Ledus.S5G099600.t2"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	CDS	9993745	9993863	0.67	+	0	transcript_id "Ledus.S5G099600.t2"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	exon	9993745	9993863	.	+	.	transcript_id "Ledus.S5G099600.t2"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	intron	9993864	9994011	.	+	.	transcript_id "Ledus.S5G099600.t2"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	CDS	9994012	9994225	0.68	+	1	transcript_id "Ledus.S5G099600.t2"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	exon	9994012	9994225	.	+	.	transcript_id "Ledus.S5G099600.t2"; gene_id "Ledus.S5G099600"
Ledus.S5	AUGUSTUS	stop_codon	9994226	9994228	.	+	0	transcript_id "Ledus.S5G099600.t2"; gene_id "Ledus.S5G099600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1123.t1 is derived from g7984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7677564	7677911	.	-	.	Ledus.S2G100500
Ledus.S2	AUGUSTUS	transcript	7677564	7677911	.	-	.	transcript_id "Ledus.S2G100500.t1"; gene_id "Ledus.S2G100500"
Ledus.S2	AUGUSTUS	stop_codon	7677561	7677563	.	-	0	transcript_id "Ledus.S2G100500.t1"; gene_id "Ledus.S2G100500"
Ledus.S2	AUGUSTUS	CDS	7677564	7677623	0.59	-	0	transcript_id "Ledus.S2G100500.t1"; gene_id "Ledus.S2G100500"
Ledus.S2	AUGUSTUS	exon	7677564	7677623	.	-	.	transcript_id "Ledus.S2G100500.t1"; gene_id "Ledus.S2G100500"
Ledus.S2	AUGUSTUS	intron	7677624	7677755	.	-	.	transcript_id "Ledus.S2G100500.t1"; gene_id "Ledus.S2G100500"
Ledus.S2	AUGUSTUS	CDS	7677756	7677911	0.32	-	0	transcript_id "Ledus.S2G100500.t1"; gene_id "Ledus.S2G100500"
Ledus.S2	AUGUSTUS	exon	7677756	7677911	.	-	.	transcript_id "Ledus.S2G100500.t1"; gene_id "Ledus.S2G100500"
Ledus.S2	AUGUSTUS	start_codon	7677909	7677911	.	-	0	transcript_id "Ledus.S2G100500.t1"; gene_id "Ledus.S2G100500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7296.t1 is derived from g11967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	845273	848450	.	-	.	Ledus.S5G007400
Ledus.S5	AUGUSTUS	transcript	845273	848450	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	stop_codon	845270	845272	.	-	0	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	845273	845353	0.99	-	0	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	845273	845353	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	845354	845443	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	845444	845624	1	-	1	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	845444	845624	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	845625	845712	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	845713	845793	1	-	1	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	845713	845793	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	845794	845900	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	845901	845983	0.99	-	0	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	845901	845983	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	845984	846098	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	846099	846261	0.98	-	1	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	846099	846261	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	846262	846447	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	846448	846521	1	-	0	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	846448	846521	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	846522	846624	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	846625	846713	0.93	-	2	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	846625	846713	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	846714	846865	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	846866	846959	1	-	0	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	846866	846959	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	846960	847035	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	847036	847186	1	-	1	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	847036	847186	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	847187	847359	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	847360	847439	1	-	0	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	847360	847439	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	847440	847557	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	847558	847668	1	-	0	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	847558	847668	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	847669	847881	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	847882	848045	1	-	2	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	847882	848045	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	848046	848131	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	848132	848304	1	-	1	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	848132	848304	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	intron	848305	848412	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	CDS	848413	848450	0.94	-	0	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	exon	848413	848450	.	-	.	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
Ledus.S5	AUGUSTUS	start_codon	848448	848450	.	-	0	transcript_id "Ledus.S5G007400.t1"; gene_id "Ledus.S5G007400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg272.t1 is derived from g7133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1312062	1320901	.	-	.	Ledus.S2G015400
Ledus.S2	AUGUSTUS	transcript	1312062	1320901	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	stop_codon	1312059	1312061	.	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1312062	1312163	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1312062	1312163	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1312164	1312252	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1312253	1312321	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1312253	1312321	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1312322	1312396	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1312397	1312463	1	-	1	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1312397	1312463	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1312464	1312605	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1312606	1312673	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1312606	1312673	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1312674	1312767	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1312768	1312878	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1312768	1312878	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1312879	1312967	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1312968	1313025	1	-	1	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1312968	1313025	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1313026	1313208	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1313209	1313245	1	-	2	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1313209	1313245	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1313246	1313395	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1313396	1313489	0.99	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1313396	1313489	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1313490	1313599	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1313600	1313665	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1313600	1313665	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1313666	1313804	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1313805	1313869	0.99	-	2	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1313805	1313869	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1313870	1313970	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1313971	1314115	0.92	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1313971	1314115	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1314116	1314207	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1314208	1314273	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1314208	1314273	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1314274	1314433	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1314434	1314583	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1314434	1314583	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1314584	1314840	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1314841	1314910	1	-	1	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1314841	1314910	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1314911	1315055	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1315056	1315132	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1315056	1315132	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1315133	1315227	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1315228	1315296	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1315228	1315296	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1315297	1315383	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1315384	1315467	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1315384	1315467	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1315468	1315606	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1315607	1315659	1	-	2	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1315607	1315659	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1315660	1315755	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1315756	1315899	1	-	2	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1315756	1315899	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1315900	1315991	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1315992	1316190	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1315992	1316190	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1316191	1316290	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1316291	1316419	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1316291	1316419	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1316420	1316594	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1316595	1316681	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1316595	1316681	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1316682	1316770	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1316771	1316884	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1316771	1316884	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1316885	1316974	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1316975	1317082	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1316975	1317082	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1317083	1317267	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1317268	1317363	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1317268	1317363	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1317364	1317577	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1317578	1317646	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1317578	1317646	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1317647	1317752	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1317753	1317854	0.99	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1317753	1317854	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1317855	1317957	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1317958	1318053	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1317958	1318053	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1318054	1318192	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1318193	1318276	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1318193	1318276	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1318277	1318409	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1318410	1318527	1	-	1	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1318410	1318527	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1318528	1318699	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1318700	1318770	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1318700	1318770	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1318771	1318956	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1318957	1319148	0.82	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1318957	1319148	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1319149	1319303	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1319304	1319551	1	-	2	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1319304	1319551	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1319552	1319703	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1319704	1319854	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1319704	1319854	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1319855	1319982	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1319983	1320099	0.98	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1319983	1320099	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1320100	1320224	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1320225	1320332	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1320225	1320332	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1320333	1320403	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1320404	1320503	1	-	1	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1320404	1320503	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1320504	1320596	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1320597	1320652	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1320597	1320652	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	intron	1320653	1320850	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	CDS	1320851	1320901	1	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	exon	1320851	1320901	.	-	.	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
Ledus.S2	AUGUSTUS	start_codon	1320899	1320901	.	-	0	transcript_id "Ledus.S2G015400.t1"; gene_id "Ledus.S2G015400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10967.t1 is derived from g4585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	937885	938687	.	-	.	Ledus.S4G012300
Ledus.S4	AUGUSTUS	transcript	937885	938687	.	-	.	transcript_id "Ledus.S4G012300.t1"; gene_id "Ledus.S4G012300"
Ledus.S4	AUGUSTUS	stop_codon	937882	937884	.	-	0	transcript_id "Ledus.S4G012300.t1"; gene_id "Ledus.S4G012300"
Ledus.S4	AUGUSTUS	CDS	937885	938564	1	-	2	transcript_id "Ledus.S4G012300.t1"; gene_id "Ledus.S4G012300"
Ledus.S4	AUGUSTUS	exon	937885	938564	.	-	.	transcript_id "Ledus.S4G012300.t1"; gene_id "Ledus.S4G012300"
Ledus.S4	AUGUSTUS	intron	938565	938662	.	-	.	transcript_id "Ledus.S4G012300.t1"; gene_id "Ledus.S4G012300"
Ledus.S4	AUGUSTUS	CDS	938663	938687	1	-	0	transcript_id "Ledus.S4G012300.t1"; gene_id "Ledus.S4G012300"
Ledus.S4	AUGUSTUS	exon	938663	938687	.	-	.	transcript_id "Ledus.S4G012300.t1"; gene_id "Ledus.S4G012300"
Ledus.S4	AUGUSTUS	start_codon	938685	938687	.	-	0	transcript_id "Ledus.S4G012300.t1"; gene_id "Ledus.S4G012300"
# This transcript jg9754.t2 is derived from g10784.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9755.t1 is derived from g10785.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9597334	9601540	.	+	.	Ledus.S3G123200
Ledus.S3	AUGUSTUS	transcript	9599028	9601540	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	start_codon	9599028	9599030	.	+	0	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9599028	9599090	0.94	+	0	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9599028	9599090	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9599091	9599296	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9599297	9599382	1	+	0	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9599297	9599382	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9599383	9599513	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9599514	9599710	0.97	+	1	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9599514	9599710	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9599711	9599797	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9599798	9599913	0.97	+	2	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9599798	9599913	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9599914	9599993	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9599994	9600079	1	+	0	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9599994	9600079	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9600080	9600259	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9600260	9600332	1	+	1	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9600260	9600332	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9600333	9600453	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9600454	9600545	1	+	0	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9600454	9600545	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9600546	9600637	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9600638	9600776	1	+	1	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9600638	9600776	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9600777	9600911	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9600912	9601006	1	+	0	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9600912	9601006	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9601007	9601087	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9601088	9601262	1	+	1	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9601088	9601262	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9601263	9601390	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9601391	9601540	0.96	+	0	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9601391	9601540	.	+	.	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	stop_codon	9601541	9601543	.	+	0	transcript_id "Ledus.S3G123200.t1"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	transcript	9597334	9601540	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	start_codon	9597334	9597336	.	+	0	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9597334	9597433	0.69	+	0	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9597334	9597433	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9597434	9597532	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9597533	9597585	1	+	2	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9597533	9597585	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9597586	9597763	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9597764	9597861	1	+	0	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9597764	9597861	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9597862	9597936	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9597937	9598042	1	+	1	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9597937	9598042	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9598043	9598125	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9598126	9598263	1	+	0	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9598126	9598263	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9598264	9598417	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9598418	9598469	1	+	0	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9598418	9598469	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9598470	9598552	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9598553	9598617	1	+	2	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9598553	9598617	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9598618	9598764	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9598765	9598871	0.98	+	0	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9598765	9598871	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9598872	9598983	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9598984	9599086	1	+	1	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9598984	9599086	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9599087	9599296	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9599297	9599382	1	+	0	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9599297	9599382	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9599383	9599513	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9599514	9599710	0.99	+	1	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9599514	9599710	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9599711	9599797	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9599798	9599913	0.99	+	2	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9599798	9599913	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9599914	9599993	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9599994	9600079	1	+	0	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9599994	9600079	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9600080	9600259	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9600260	9600332	1	+	1	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9600260	9600332	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9600333	9600453	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9600454	9600545	1	+	0	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9600454	9600545	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9600546	9600637	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9600638	9600776	1	+	1	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9600638	9600776	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9600777	9600911	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9600912	9601006	1	+	0	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9600912	9601006	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9601007	9601087	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9601088	9601262	1	+	1	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9601088	9601262	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	intron	9601263	9601390	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	CDS	9601391	9601540	0.97	+	0	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	exon	9601391	9601540	.	+	.	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
Ledus.S3	AUGUSTUS	stop_codon	9601541	9601543	.	+	0	transcript_id "Ledus.S3G123200.t2"; gene_id "Ledus.S3G123200"
# This transcript jg10888.t2 is derived from g4506.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10889.t1 is derived from g4507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	329011	332329	.	-	.	Ledus.S4G004500
Ledus.S4	AUGUSTUS	transcript	329011	332329	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	stop_codon	329008	329010	.	-	0	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	329011	329295	0.71	-	0	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	329011	329295	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	intron	329296	329395	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	329396	329803	1	-	0	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	329396	329803	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	intron	329804	329888	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	329889	330262	0.83	-	2	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	329889	330262	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	intron	330263	330376	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	330377	330407	0.67	-	0	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	330377	330407	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	intron	330408	330551	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	330552	330638	1	-	0	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	330552	330638	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	intron	330639	330777	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	330778	330846	1	-	0	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	330778	330846	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	intron	330847	330966	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	330967	331056	1	-	0	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	330967	331056	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	intron	331057	331152	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	331153	331204	1	-	1	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	331153	331204	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	intron	331205	331299	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	331300	331408	1	-	2	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	331300	331408	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	intron	331409	331510	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	331511	331560	1	-	1	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	331511	331560	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	intron	331561	331703	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	331704	331850	1	-	1	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	331704	331850	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	intron	331851	331936	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	331937	332014	1	-	1	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	331937	332014	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	intron	332015	332111	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	CDS	332112	332329	1	-	0	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	exon	332112	332329	.	-	.	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
Ledus.S4	AUGUSTUS	start_codon	332327	332329	.	-	0	transcript_id "Ledus.S4G004500.t1"; gene_id "Ledus.S4G004500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10976.t1 is derived from g4594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	973344	974276	.	-	.	Ledus.S4G013200
Ledus.S4	AUGUSTUS	transcript	973344	974276	.	-	.	transcript_id "Ledus.S4G013200.t1"; gene_id "Ledus.S4G013200"
Ledus.S4	AUGUSTUS	stop_codon	973341	973343	.	-	0	transcript_id "Ledus.S4G013200.t1"; gene_id "Ledus.S4G013200"
Ledus.S4	AUGUSTUS	CDS	973344	973436	1	-	0	transcript_id "Ledus.S4G013200.t1"; gene_id "Ledus.S4G013200"
Ledus.S4	AUGUSTUS	exon	973344	973436	.	-	.	transcript_id "Ledus.S4G013200.t1"; gene_id "Ledus.S4G013200"
Ledus.S4	AUGUSTUS	intron	973437	973533	.	-	.	transcript_id "Ledus.S4G013200.t1"; gene_id "Ledus.S4G013200"
Ledus.S4	AUGUSTUS	CDS	973534	973829	1	-	2	transcript_id "Ledus.S4G013200.t1"; gene_id "Ledus.S4G013200"
Ledus.S4	AUGUSTUS	exon	973534	973829	.	-	.	transcript_id "Ledus.S4G013200.t1"; gene_id "Ledus.S4G013200"
Ledus.S4	AUGUSTUS	intron	973830	973963	.	-	.	transcript_id "Ledus.S4G013200.t1"; gene_id "Ledus.S4G013200"
Ledus.S4	AUGUSTUS	CDS	973964	974276	0.78	-	0	transcript_id "Ledus.S4G013200.t1"; gene_id "Ledus.S4G013200"
Ledus.S4	AUGUSTUS	exon	973964	974276	.	-	.	transcript_id "Ledus.S4G013200.t1"; gene_id "Ledus.S4G013200"
Ledus.S4	AUGUSTUS	start_codon	974274	974276	.	-	0	transcript_id "Ledus.S4G013200.t1"; gene_id "Ledus.S4G013200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9625.t1 is derived from g10655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8451869	8453654	.	+	.	Ledus.S3G110200
Ledus.S3	AUGUSTUS	transcript	8451869	8453654	.	+	.	transcript_id "Ledus.S3G110200.t1"; gene_id "Ledus.S3G110200"
Ledus.S3	AUGUSTUS	start_codon	8451869	8451871	.	+	0	transcript_id "Ledus.S3G110200.t1"; gene_id "Ledus.S3G110200"
Ledus.S3	AUGUSTUS	CDS	8451869	8451921	0.8	+	0	transcript_id "Ledus.S3G110200.t1"; gene_id "Ledus.S3G110200"
Ledus.S3	AUGUSTUS	exon	8451869	8451921	.	+	.	transcript_id "Ledus.S3G110200.t1"; gene_id "Ledus.S3G110200"
Ledus.S3	AUGUSTUS	intron	8451922	8451999	.	+	.	transcript_id "Ledus.S3G110200.t1"; gene_id "Ledus.S3G110200"
Ledus.S3	AUGUSTUS	CDS	8452000	8452201	0.67	+	1	transcript_id "Ledus.S3G110200.t1"; gene_id "Ledus.S3G110200"
Ledus.S3	AUGUSTUS	exon	8452000	8452201	.	+	.	transcript_id "Ledus.S3G110200.t1"; gene_id "Ledus.S3G110200"
Ledus.S3	AUGUSTUS	intron	8452202	8452367	.	+	.	transcript_id "Ledus.S3G110200.t1"; gene_id "Ledus.S3G110200"
Ledus.S3	AUGUSTUS	CDS	8452368	8453654	0.97	+	0	transcript_id "Ledus.S3G110200.t1"; gene_id "Ledus.S3G110200"
Ledus.S3	AUGUSTUS	exon	8452368	8453654	.	+	.	transcript_id "Ledus.S3G110200.t1"; gene_id "Ledus.S3G110200"
Ledus.S3	AUGUSTUS	stop_codon	8453655	8453657	.	+	0	transcript_id "Ledus.S3G110200.t1"; gene_id "Ledus.S3G110200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2307.t1 is derived from g9170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17118681	17120150	.	+	.	Ledus.S2G218900
Ledus.S2	AUGUSTUS	transcript	17118681	17119353	.	+	.	transcript_id "Ledus.S2G218900.t1"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	start_codon	17118681	17118683	.	+	0	transcript_id "Ledus.S2G218900.t1"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	CDS	17118681	17119257	1	+	0	transcript_id "Ledus.S2G218900.t1"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	exon	17118681	17119257	.	+	.	transcript_id "Ledus.S2G218900.t1"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	intron	17119258	17119312	.	+	.	transcript_id "Ledus.S2G218900.t1"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	CDS	17119313	17119353	1	+	2	transcript_id "Ledus.S2G218900.t1"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	exon	17119313	17119353	.	+	.	transcript_id "Ledus.S2G218900.t1"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	stop_codon	17119354	17119356	.	+	0	transcript_id "Ledus.S2G218900.t1"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	transcript	17118681	17120150	.	+	.	transcript_id "Ledus.S2G218900.t2"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	start_codon	17118681	17118683	.	+	0	transcript_id "Ledus.S2G218900.t2"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	CDS	17118681	17119705	1	+	0	transcript_id "Ledus.S2G218900.t2"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	exon	17118681	17119705	.	+	.	transcript_id "Ledus.S2G218900.t2"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	intron	17119706	17119798	.	+	.	transcript_id "Ledus.S2G218900.t2"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	CDS	17119799	17120150	0.97	+	1	transcript_id "Ledus.S2G218900.t2"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	exon	17119799	17120150	.	+	.	transcript_id "Ledus.S2G218900.t2"; gene_id "Ledus.S2G218900"
Ledus.S2	AUGUSTUS	stop_codon	17120151	17120153	.	+	0	transcript_id "Ledus.S2G218900.t2"; gene_id "Ledus.S2G218900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3155.t1 is derived from g590.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6365298	6366230	.	-	.	Ledus.S1G057600
Ledus.S1	AUGUSTUS	transcript	6365298	6366230	.	-	.	transcript_id "Ledus.S1G057600.t1"; gene_id "Ledus.S1G057600"
Ledus.S1	AUGUSTUS	stop_codon	6365295	6365297	.	-	0	transcript_id "Ledus.S1G057600.t1"; gene_id "Ledus.S1G057600"
Ledus.S1	AUGUSTUS	CDS	6365298	6366230	0.8	-	0	transcript_id "Ledus.S1G057600.t1"; gene_id "Ledus.S1G057600"
Ledus.S1	AUGUSTUS	exon	6365298	6366230	.	-	.	transcript_id "Ledus.S1G057600.t1"; gene_id "Ledus.S1G057600"
Ledus.S1	AUGUSTUS	start_codon	6366228	6366230	.	-	0	transcript_id "Ledus.S1G057600.t1"; gene_id "Ledus.S1G057600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7927.t1 is derived from g12598.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7872886	7875581	.	-	.	Ledus.S5G070500
Ledus.S5	AUGUSTUS	transcript	7872886	7875581	.	-	.	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	stop_codon	7872883	7872885	.	-	0	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	CDS	7872886	7872948	1	-	0	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	exon	7872886	7872948	.	-	.	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	intron	7872949	7873075	.	-	.	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	CDS	7873076	7873689	1	-	2	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	exon	7873076	7873689	.	-	.	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	intron	7873690	7873787	.	-	.	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	CDS	7873788	7874181	1	-	0	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	exon	7873788	7874181	.	-	.	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	intron	7874182	7874306	.	-	.	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	CDS	7874307	7874378	1	-	0	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	exon	7874307	7874378	.	-	.	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	intron	7874379	7875154	.	-	.	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	CDS	7875155	7875179	0.93	-	1	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	exon	7875155	7875179	.	-	.	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	intron	7875180	7875513	.	-	.	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	CDS	7875514	7875581	0.61	-	0	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	exon	7875514	7875581	.	-	.	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
Ledus.S5	AUGUSTUS	start_codon	7875579	7875581	.	-	0	transcript_id "Ledus.S5G070500.t1"; gene_id "Ledus.S5G070500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11253.t1 is derived from g4871.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2963442	2965075	.	+	.	Ledus.S4G040900
Ledus.S4	AUGUSTUS	transcript	2963442	2965075	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	start_codon	2963442	2963444	.	+	0	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	CDS	2963442	2963736	0.48	+	0	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	exon	2963442	2963736	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	intron	2963737	2963813	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	CDS	2963814	2963947	1	+	2	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	exon	2963814	2963947	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	intron	2963948	2964026	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	CDS	2964027	2964165	1	+	0	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	exon	2964027	2964165	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	intron	2964166	2964239	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	CDS	2964240	2964387	1	+	2	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	exon	2964240	2964387	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	intron	2964388	2964485	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	CDS	2964486	2964665	0.94	+	1	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	exon	2964486	2964665	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	intron	2964666	2964763	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	CDS	2964764	2964772	0.84	+	1	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	exon	2964764	2964772	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	intron	2964773	2964839	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	CDS	2964840	2964879	0.84	+	1	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	exon	2964840	2964879	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	intron	2964880	2965063	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	CDS	2965064	2965075	0.84	+	0	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	exon	2965064	2965075	.	+	.	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
Ledus.S4	AUGUSTUS	stop_codon	2965076	2965078	.	+	0	transcript_id "Ledus.S4G040900.t1"; gene_id "Ledus.S4G040900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11560.t1 is derived from g5178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5276022	5277431	.	+	.	Ledus.S4G071600
Ledus.S4	AUGUSTUS	transcript	5276022	5277431	.	+	.	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	start_codon	5276022	5276024	.	+	0	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	CDS	5276022	5276157	0.89	+	0	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	exon	5276022	5276157	.	+	.	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	intron	5276158	5276243	.	+	.	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	CDS	5276244	5276413	0.81	+	2	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	exon	5276244	5276413	.	+	.	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	intron	5276414	5276507	.	+	.	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	CDS	5276508	5276696	0.95	+	0	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	exon	5276508	5276696	.	+	.	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	intron	5276697	5276764	.	+	.	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	CDS	5276765	5276927	1	+	0	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	exon	5276765	5276927	.	+	.	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	intron	5276928	5277025	.	+	.	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	CDS	5277026	5277218	1	+	2	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	exon	5277026	5277218	.	+	.	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	intron	5277219	5277298	.	+	.	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	CDS	5277299	5277431	1	+	1	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	exon	5277299	5277431	.	+	.	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
Ledus.S4	AUGUSTUS	stop_codon	5277432	5277434	.	+	0	transcript_id "Ledus.S4G071600.t1"; gene_id "Ledus.S4G071600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9314.t1 is derived from g10344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6008631	6019773	.	+	.	Ledus.S3G079100
Ledus.S3	AUGUSTUS	transcript	6008631	6019773	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	start_codon	6008631	6008633	.	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6008631	6008795	1	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6008631	6008795	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6008796	6009186	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6009187	6009267	1	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6009187	6009267	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6009268	6009436	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6009437	6009574	1	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6009437	6009574	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6009575	6009709	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6009710	6009754	0.99	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6009710	6009754	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6009755	6009933	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6009934	6009984	0.98	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6009934	6009984	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6009985	6010172	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6010173	6010270	1	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6010173	6010270	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6010271	6010404	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6010405	6010492	1	+	1	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6010405	6010492	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6010493	6011046	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6011047	6011184	0.96	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6011047	6011184	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6011185	6011287	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6011288	6011585	0.93	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6011288	6011585	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6011586	6011780	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6011781	6011855	1	+	2	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6011781	6011855	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6011856	6011966	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6011967	6012064	0.79	+	2	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6011967	6012064	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6012065	6012168	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6012169	6012252	0.98	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6012169	6012252	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6012253	6012378	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6012379	6012453	0.99	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6012379	6012453	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6012454	6012557	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6012558	6012605	0.53	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6012558	6012605	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6012606	6012714	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6012715	6012810	0.92	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6012715	6012810	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6012811	6012924	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6012925	6013154	1	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6012925	6013154	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6013155	6013270	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6013271	6016887	0.98	+	1	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6013271	6016887	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6016888	6017106	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6017107	6017186	1	+	2	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6017107	6017186	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6017187	6017368	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6017369	6017452	1	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6017369	6017452	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6017453	6017604	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6017605	6017676	1	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6017605	6017676	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6017677	6017767	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6017768	6017879	0.58	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6017768	6017879	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6017880	6017987	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6017988	6018048	1	+	2	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6017988	6018048	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6018049	6018253	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6018254	6018382	1	+	1	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6018254	6018382	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6018383	6018496	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6018497	6018614	1	+	1	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6018497	6018614	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6018615	6018772	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6018773	6018858	1	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6018773	6018858	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6018859	6018998	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6018999	6019395	0.52	+	1	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6018999	6019395	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	intron	6019396	6019611	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	CDS	6019612	6019773	0.49	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	exon	6019612	6019773	.	+	.	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
Ledus.S3	AUGUSTUS	stop_codon	6019774	6019776	.	+	0	transcript_id "Ledus.S3G079100.t1"; gene_id "Ledus.S3G079100"
# This transcript jg1900.t2 is derived from g8763.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1901.t1 is derived from g8764.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13272245	13273154	.	-	.	Ledus.S2G178300
Ledus.S2	AUGUSTUS	transcript	13272245	13273154	.	-	.	transcript_id "Ledus.S2G178300.t1"; gene_id "Ledus.S2G178300"
Ledus.S2	AUGUSTUS	stop_codon	13272242	13272244	.	-	0	transcript_id "Ledus.S2G178300.t1"; gene_id "Ledus.S2G178300"
Ledus.S2	AUGUSTUS	CDS	13272245	13272267	0.98	-	2	transcript_id "Ledus.S2G178300.t1"; gene_id "Ledus.S2G178300"
Ledus.S2	AUGUSTUS	exon	13272245	13272267	.	-	.	transcript_id "Ledus.S2G178300.t1"; gene_id "Ledus.S2G178300"
Ledus.S2	AUGUSTUS	intron	13272268	13272452	.	-	.	transcript_id "Ledus.S2G178300.t1"; gene_id "Ledus.S2G178300"
Ledus.S2	AUGUSTUS	CDS	13272453	13272711	0.98	-	0	transcript_id "Ledus.S2G178300.t1"; gene_id "Ledus.S2G178300"
Ledus.S2	AUGUSTUS	exon	13272453	13272711	.	-	.	transcript_id "Ledus.S2G178300.t1"; gene_id "Ledus.S2G178300"
Ledus.S2	AUGUSTUS	intron	13272712	13273061	.	-	.	transcript_id "Ledus.S2G178300.t1"; gene_id "Ledus.S2G178300"
Ledus.S2	AUGUSTUS	CDS	13273062	13273154	0.91	-	0	transcript_id "Ledus.S2G178300.t1"; gene_id "Ledus.S2G178300"
Ledus.S2	AUGUSTUS	exon	13273062	13273154	.	-	.	transcript_id "Ledus.S2G178300.t1"; gene_id "Ledus.S2G178300"
Ledus.S2	AUGUSTUS	start_codon	13273152	13273154	.	-	0	transcript_id "Ledus.S2G178300.t1"; gene_id "Ledus.S2G178300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1701.t1 is derived from g8562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11966444	11973047	.	+	.	Ledus.S2G158300
Ledus.S2	AUGUSTUS	transcript	11966444	11973047	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	start_codon	11966444	11966446	.	+	0	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11966444	11966558	0.91	+	0	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11966444	11966558	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11966559	11966846	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11966847	11967154	1	+	2	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11966847	11967154	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11967155	11967240	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11967241	11967298	1	+	0	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11967241	11967298	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11967299	11967386	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11967387	11967571	1	+	2	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11967387	11967571	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11967572	11967663	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11967664	11967705	1	+	0	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11967664	11967705	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11967706	11967796	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11967797	11968148	0.99	+	0	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11967797	11968148	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11968149	11968249	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11968250	11968787	0.99	+	2	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11968250	11968787	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11968788	11968887	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11968888	11968948	1	+	1	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11968888	11968948	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11968949	11969031	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11969032	11969094	1	+	0	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11969032	11969094	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11969095	11969186	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11969187	11969217	1	+	0	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11969187	11969217	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11969218	11969409	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11969410	11969487	0.66	+	2	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11969410	11969487	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11969488	11969575	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11969576	11969705	1	+	2	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11969576	11969705	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11969706	11969814	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11969815	11969917	1	+	1	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11969815	11969917	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11969918	11970092	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11970093	11970536	0.99	+	0	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11970093	11970536	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11970537	11970690	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11970691	11971044	0.98	+	0	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11970691	11971044	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11971045	11971175	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11971176	11972650	0.92	+	0	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11971176	11972650	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	intron	11972651	11972968	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	CDS	11972969	11973047	0.97	+	1	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	exon	11972969	11973047	.	+	.	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
Ledus.S2	AUGUSTUS	stop_codon	11973048	11973050	.	+	0	transcript_id "Ledus.S2G158300.t1"; gene_id "Ledus.S2G158300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7285.t1 is derived from g11956.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	756309	756593	.	-	.	Ledus.S5G006300
Ledus.S5	AUGUSTUS	transcript	756309	756593	.	-	.	transcript_id "Ledus.S5G006300.t1"; gene_id "Ledus.S5G006300"
Ledus.S5	AUGUSTUS	stop_codon	756306	756308	.	-	0	transcript_id "Ledus.S5G006300.t1"; gene_id "Ledus.S5G006300"
Ledus.S5	AUGUSTUS	CDS	756309	756593	1	-	0	transcript_id "Ledus.S5G006300.t1"; gene_id "Ledus.S5G006300"
Ledus.S5	AUGUSTUS	exon	756309	756593	.	-	.	transcript_id "Ledus.S5G006300.t1"; gene_id "Ledus.S5G006300"
Ledus.S5	AUGUSTUS	start_codon	756591	756593	.	-	0	transcript_id "Ledus.S5G006300.t1"; gene_id "Ledus.S5G006300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2766.t1 is derived from g200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3391088	3392219	.	+	.	Ledus.S1G018700
Ledus.S1	AUGUSTUS	transcript	3391088	3392219	.	+	.	transcript_id "Ledus.S1G018700.t1"; gene_id "Ledus.S1G018700"
Ledus.S1	AUGUSTUS	start_codon	3391088	3391090	.	+	0	transcript_id "Ledus.S1G018700.t1"; gene_id "Ledus.S1G018700"
Ledus.S1	AUGUSTUS	CDS	3391088	3391291	0.38	+	0	transcript_id "Ledus.S1G018700.t1"; gene_id "Ledus.S1G018700"
Ledus.S1	AUGUSTUS	exon	3391088	3391291	.	+	.	transcript_id "Ledus.S1G018700.t1"; gene_id "Ledus.S1G018700"
Ledus.S1	AUGUSTUS	intron	3391292	3391397	.	+	.	transcript_id "Ledus.S1G018700.t1"; gene_id "Ledus.S1G018700"
Ledus.S1	AUGUSTUS	CDS	3391398	3392219	0.95	+	0	transcript_id "Ledus.S1G018700.t1"; gene_id "Ledus.S1G018700"
Ledus.S1	AUGUSTUS	exon	3391398	3392219	.	+	.	transcript_id "Ledus.S1G018700.t1"; gene_id "Ledus.S1G018700"
Ledus.S1	AUGUSTUS	stop_codon	3392220	3392222	.	+	0	transcript_id "Ledus.S1G018700.t1"; gene_id "Ledus.S1G018700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg22.t1 is derived from g9453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C31	AUGUSTUS	gene	17768	18380	.	-	.	Ledus.C31G000300
Ledus.C31	AUGUSTUS	transcript	17768	18380	.	-	.	transcript_id "Ledus.C31G000300.t1"; gene_id "Ledus.C31G000300"
Ledus.C31	AUGUSTUS	stop_codon	17765	17767	.	-	0	transcript_id "Ledus.C31G000300.t1"; gene_id "Ledus.C31G000300"
Ledus.C31	AUGUSTUS	CDS	17768	18038	0.73	-	1	transcript_id "Ledus.C31G000300.t1"; gene_id "Ledus.C31G000300"
Ledus.C31	AUGUSTUS	exon	17768	18038	.	-	.	transcript_id "Ledus.C31G000300.t1"; gene_id "Ledus.C31G000300"
Ledus.C31	AUGUSTUS	intron	18039	18195	.	-	.	transcript_id "Ledus.C31G000300.t1"; gene_id "Ledus.C31G000300"
Ledus.C31	AUGUSTUS	CDS	18196	18380	0.86	-	0	transcript_id "Ledus.C31G000300.t1"; gene_id "Ledus.C31G000300"
Ledus.C31	AUGUSTUS	exon	18196	18380	.	-	.	transcript_id "Ledus.C31G000300.t1"; gene_id "Ledus.C31G000300"
Ledus.C31	AUGUSTUS	start_codon	18378	18380	.	-	0	transcript_id "Ledus.C31G000300.t1"; gene_id "Ledus.C31G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2257.t1 is derived from g9120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16589212	16590035	.	+	.	Ledus.S2G213900
Ledus.S2	AUGUSTUS	transcript	16589212	16590035	.	+	.	transcript_id "Ledus.S2G213900.t1"; gene_id "Ledus.S2G213900"
Ledus.S2	AUGUSTUS	start_codon	16589212	16589214	.	+	0	transcript_id "Ledus.S2G213900.t1"; gene_id "Ledus.S2G213900"
Ledus.S2	AUGUSTUS	CDS	16589212	16589619	0.24	+	0	transcript_id "Ledus.S2G213900.t1"; gene_id "Ledus.S2G213900"
Ledus.S2	AUGUSTUS	exon	16589212	16589619	.	+	.	transcript_id "Ledus.S2G213900.t1"; gene_id "Ledus.S2G213900"
Ledus.S2	AUGUSTUS	intron	16589620	16589759	.	+	.	transcript_id "Ledus.S2G213900.t1"; gene_id "Ledus.S2G213900"
Ledus.S2	AUGUSTUS	CDS	16589760	16590035	0.27	+	0	transcript_id "Ledus.S2G213900.t1"; gene_id "Ledus.S2G213900"
Ledus.S2	AUGUSTUS	exon	16589760	16590035	.	+	.	transcript_id "Ledus.S2G213900.t1"; gene_id "Ledus.S2G213900"
Ledus.S2	AUGUSTUS	stop_codon	16590036	16590038	.	+	0	transcript_id "Ledus.S2G213900.t1"; gene_id "Ledus.S2G213900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6018.t1 is derived from g3461.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28445164	28445818	.	+	.	Ledus.S1G343900
Ledus.S1	AUGUSTUS	transcript	28445164	28445818	.	+	.	transcript_id "Ledus.S1G343900.t1"; gene_id "Ledus.S1G343900"
Ledus.S1	AUGUSTUS	start_codon	28445164	28445166	.	+	0	transcript_id "Ledus.S1G343900.t1"; gene_id "Ledus.S1G343900"
Ledus.S1	AUGUSTUS	CDS	28445164	28445627	0.54	+	0	transcript_id "Ledus.S1G343900.t1"; gene_id "Ledus.S1G343900"
Ledus.S1	AUGUSTUS	exon	28445164	28445627	.	+	.	transcript_id "Ledus.S1G343900.t1"; gene_id "Ledus.S1G343900"
Ledus.S1	AUGUSTUS	intron	28445628	28445739	.	+	.	transcript_id "Ledus.S1G343900.t1"; gene_id "Ledus.S1G343900"
Ledus.S1	AUGUSTUS	CDS	28445740	28445818	0.55	+	1	transcript_id "Ledus.S1G343900.t1"; gene_id "Ledus.S1G343900"
Ledus.S1	AUGUSTUS	exon	28445740	28445818	.	+	.	transcript_id "Ledus.S1G343900.t1"; gene_id "Ledus.S1G343900"
Ledus.S1	AUGUSTUS	stop_codon	28445819	28445821	.	+	0	transcript_id "Ledus.S1G343900.t1"; gene_id "Ledus.S1G343900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6861.t1 is derived from g4305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34797787	34801114	.	+	.	Ledus.S1G428200
Ledus.S1	AUGUSTUS	transcript	34797787	34801114	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	start_codon	34797787	34797789	.	+	0	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34797787	34798269	0.93	+	0	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34797787	34798269	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	intron	34798270	34798377	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34798378	34798485	0.99	+	0	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34798378	34798485	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	intron	34798486	34798585	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34798586	34798701	1	+	0	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34798586	34798701	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	intron	34798702	34798855	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34798856	34798945	1	+	1	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34798856	34798945	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	intron	34798946	34799070	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34799071	34799137	1	+	1	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34799071	34799137	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	intron	34799138	34799233	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34799234	34799299	1	+	0	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34799234	34799299	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	intron	34799300	34799650	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34799651	34799743	1	+	0	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34799651	34799743	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	intron	34799744	34799873	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34799874	34799939	1	+	0	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34799874	34799939	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	intron	34799940	34800126	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34800127	34800236	1	+	0	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34800127	34800236	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	intron	34800237	34800346	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34800347	34800433	0.97	+	1	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34800347	34800433	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	intron	34800434	34800547	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34800548	34800620	1	+	1	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34800548	34800620	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	intron	34800621	34800712	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34800713	34800856	1	+	0	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34800713	34800856	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	intron	34800857	34800952	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	CDS	34800953	34801114	0.99	+	0	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	exon	34800953	34801114	.	+	.	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
Ledus.S1	AUGUSTUS	stop_codon	34801115	34801117	.	+	0	transcript_id "Ledus.S1G428200.t1"; gene_id "Ledus.S1G428200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3522.t1 is derived from g958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9036516	9037493	.	+	.	Ledus.S1G094300
Ledus.S1	AUGUSTUS	transcript	9036516	9037453	.	+	.	transcript_id "Ledus.S1G094300.t1"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	start_codon	9036516	9036518	.	+	0	transcript_id "Ledus.S1G094300.t1"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	CDS	9036516	9036665	0.47	+	0	transcript_id "Ledus.S1G094300.t1"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	exon	9036516	9036665	.	+	.	transcript_id "Ledus.S1G094300.t1"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	intron	9036666	9037103	.	+	.	transcript_id "Ledus.S1G094300.t1"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	CDS	9037104	9037220	0.99	+	0	transcript_id "Ledus.S1G094300.t1"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	exon	9037104	9037220	.	+	.	transcript_id "Ledus.S1G094300.t1"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	intron	9037221	9037384	.	+	.	transcript_id "Ledus.S1G094300.t1"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	CDS	9037385	9037453	1	+	0	transcript_id "Ledus.S1G094300.t1"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	exon	9037385	9037453	.	+	.	transcript_id "Ledus.S1G094300.t1"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	stop_codon	9037454	9037456	.	+	0	transcript_id "Ledus.S1G094300.t1"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	transcript	9036516	9037493	.	+	.	transcript_id "Ledus.S1G094300.t2"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	start_codon	9036516	9036518	.	+	0	transcript_id "Ledus.S1G094300.t2"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	CDS	9036516	9036665	0.46	+	0	transcript_id "Ledus.S1G094300.t2"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	exon	9036516	9036665	.	+	.	transcript_id "Ledus.S1G094300.t2"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	intron	9036666	9037103	.	+	.	transcript_id "Ledus.S1G094300.t2"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	CDS	9037104	9037220	0.99	+	0	transcript_id "Ledus.S1G094300.t2"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	exon	9037104	9037220	.	+	.	transcript_id "Ledus.S1G094300.t2"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	intron	9037221	9037394	.	+	.	transcript_id "Ledus.S1G094300.t2"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	CDS	9037395	9037493	0.65	+	0	transcript_id "Ledus.S1G094300.t2"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	exon	9037395	9037493	.	+	.	transcript_id "Ledus.S1G094300.t2"; gene_id "Ledus.S1G094300"
Ledus.S1	AUGUSTUS	stop_codon	9037494	9037496	.	+	0	transcript_id "Ledus.S1G094300.t2"; gene_id "Ledus.S1G094300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8348.t1 is derived from g13020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10938700	10942939	.	-	.	Ledus.S5G112600
Ledus.S5	AUGUSTUS	transcript	10938700	10942939	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	stop_codon	10938697	10938699	.	-	0	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10938700	10938733	1	-	1	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10938700	10938733	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10938734	10939093	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10939094	10939220	1	-	2	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10939094	10939220	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10939221	10939301	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10939302	10939610	1	-	2	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10939302	10939610	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10939611	10939696	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10939697	10939771	0.76	-	2	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10939697	10939771	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10939772	10939859	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10939860	10939945	0.44	-	1	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10939860	10939945	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10939946	10940086	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10940087	10940147	0.96	-	2	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10940087	10940147	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10940148	10940472	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10940473	10940518	0.81	-	0	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10940473	10940518	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10940519	10940624	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10940625	10940693	0.96	-	0	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10940625	10940693	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10940694	10940797	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10940798	10940886	0.97	-	2	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10940798	10940886	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10940887	10940980	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10940981	10941113	1	-	0	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10940981	10941113	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10941114	10941223	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10941224	10941548	0.95	-	1	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10941224	10941548	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10941549	10941654	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10941655	10941864	0.98	-	1	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10941655	10941864	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10941865	10941939	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10941940	10942054	1	-	2	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10941940	10942054	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10942055	10942139	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10942140	10942245	1	-	0	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10942140	10942245	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10942246	10942347	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10942348	10942461	1	-	0	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10942348	10942461	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10942462	10942927	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10942928	10942939	1	-	0	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10942928	10942939	.	-	.	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	start_codon	10942937	10942939	.	-	0	transcript_id "Ledus.S5G112600.t1"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	transcript	10938844	10942939	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	stop_codon	10938841	10938843	.	-	0	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10938844	10938868	0.99	-	1	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10938844	10938868	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10938869	10939093	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10939094	10939220	1	-	2	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10939094	10939220	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10939221	10939301	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10939302	10939610	1	-	2	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10939302	10939610	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10939611	10939696	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10939697	10939771	0.77	-	2	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10939697	10939771	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10939772	10939859	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10939860	10939945	0.45	-	1	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10939860	10939945	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10939946	10940086	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10940087	10940147	0.95	-	2	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10940087	10940147	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10940148	10940472	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10940473	10940518	0.77	-	0	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10940473	10940518	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10940519	10940624	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10940625	10940693	0.99	-	0	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10940625	10940693	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10940694	10940797	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10940798	10940886	0.97	-	2	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10940798	10940886	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10940887	10940980	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10940981	10941113	1	-	0	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10940981	10941113	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10941114	10941223	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10941224	10941548	0.94	-	1	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10941224	10941548	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10941549	10941654	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10941655	10941864	0.95	-	1	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10941655	10941864	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10941865	10941939	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10941940	10942054	1	-	2	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10941940	10942054	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10942055	10942139	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10942140	10942245	1	-	0	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10942140	10942245	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10942246	10942347	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10942348	10942461	1	-	0	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10942348	10942461	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	intron	10942462	10942927	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	CDS	10942928	10942939	1	-	0	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	exon	10942928	10942939	.	-	.	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
Ledus.S5	AUGUSTUS	start_codon	10942937	10942939	.	-	0	transcript_id "Ledus.S5G112600.t2"; gene_id "Ledus.S5G112600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6271.t1 is derived from g3714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30054196	30058762	.	+	.	Ledus.S1G369200
Ledus.S1	AUGUSTUS	transcript	30054196	30058762	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	start_codon	30054196	30054198	.	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30054196	30054535	0.66	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30054196	30054535	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30054536	30054624	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30054625	30054836	1	+	2	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30054625	30054836	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30054837	30055019	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30055020	30055187	1	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30055020	30055187	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30055188	30055385	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30055386	30055509	1	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30055386	30055509	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30055510	30055611	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30055612	30055688	1	+	2	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30055612	30055688	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30055689	30055776	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30055777	30055920	1	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30055777	30055920	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30055921	30056036	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30056037	30056267	1	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30056037	30056267	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30056268	30056393	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30056394	30056484	1	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30056394	30056484	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30056485	30056629	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30056630	30056751	1	+	2	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30056630	30056751	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30056752	30056883	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30056884	30056991	0.93	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30056884	30056991	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30056992	30057105	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30057106	30057211	0.9	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30057106	30057211	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30057212	30057327	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30057328	30057351	1	+	2	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30057328	30057351	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30057352	30057424	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30057425	30057569	1	+	2	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30057425	30057569	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30057570	30057660	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30057661	30057778	1	+	1	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30057661	30057778	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30057779	30057954	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30057955	30058114	1	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30057955	30058114	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30058115	30058212	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30058213	30058244	1	+	2	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30058213	30058244	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30058245	30058343	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30058344	30058409	1	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30058344	30058409	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30058410	30058502	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30058503	30058574	0.97	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30058503	30058574	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	intron	30058575	30058684	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	CDS	30058685	30058762	0.89	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	exon	30058685	30058762	.	+	.	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
Ledus.S1	AUGUSTUS	stop_codon	30058763	30058765	.	+	0	transcript_id "Ledus.S1G369200.t1"; gene_id "Ledus.S1G369200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11211.t1 is derived from g4829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2752906	2753454	.	+	.	Ledus.S4G036700
Ledus.S4	AUGUSTUS	transcript	2752906	2753454	.	+	.	transcript_id "Ledus.S4G036700.t1"; gene_id "Ledus.S4G036700"
Ledus.S4	AUGUSTUS	start_codon	2752906	2752908	.	+	0	transcript_id "Ledus.S4G036700.t1"; gene_id "Ledus.S4G036700"
Ledus.S4	AUGUSTUS	CDS	2752906	2753454	0.75	+	0	transcript_id "Ledus.S4G036700.t1"; gene_id "Ledus.S4G036700"
Ledus.S4	AUGUSTUS	exon	2752906	2753454	.	+	.	transcript_id "Ledus.S4G036700.t1"; gene_id "Ledus.S4G036700"
Ledus.S4	AUGUSTUS	stop_codon	2753455	2753457	.	+	0	transcript_id "Ledus.S4G036700.t1"; gene_id "Ledus.S4G036700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6640.t1 is derived from g4083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32819636	32820127	.	+	.	Ledus.S1G406100
Ledus.S1	AUGUSTUS	transcript	32819636	32820127	.	+	.	transcript_id "Ledus.S1G406100.t1"; gene_id "Ledus.S1G406100"
Ledus.S1	AUGUSTUS	start_codon	32819636	32819638	.	+	0	transcript_id "Ledus.S1G406100.t1"; gene_id "Ledus.S1G406100"
Ledus.S1	AUGUSTUS	CDS	32819636	32819695	0.81	+	0	transcript_id "Ledus.S1G406100.t1"; gene_id "Ledus.S1G406100"
Ledus.S1	AUGUSTUS	exon	32819636	32819695	.	+	.	transcript_id "Ledus.S1G406100.t1"; gene_id "Ledus.S1G406100"
Ledus.S1	AUGUSTUS	intron	32819696	32819809	.	+	.	transcript_id "Ledus.S1G406100.t1"; gene_id "Ledus.S1G406100"
Ledus.S1	AUGUSTUS	CDS	32819810	32820127	0.74	+	0	transcript_id "Ledus.S1G406100.t1"; gene_id "Ledus.S1G406100"
Ledus.S1	AUGUSTUS	exon	32819810	32820127	.	+	.	transcript_id "Ledus.S1G406100.t1"; gene_id "Ledus.S1G406100"
Ledus.S1	AUGUSTUS	stop_codon	32820128	32820130	.	+	0	transcript_id "Ledus.S1G406100.t1"; gene_id "Ledus.S1G406100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7961.t1 is derived from g12632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8248952	8249356	.	-	.	Ledus.S5G073900
Ledus.S5	AUGUSTUS	transcript	8248952	8249356	.	-	.	transcript_id "Ledus.S5G073900.t1"; gene_id "Ledus.S5G073900"
Ledus.S5	AUGUSTUS	stop_codon	8248949	8248951	.	-	0	transcript_id "Ledus.S5G073900.t1"; gene_id "Ledus.S5G073900"
Ledus.S5	AUGUSTUS	CDS	8248952	8249356	0.96	-	0	transcript_id "Ledus.S5G073900.t1"; gene_id "Ledus.S5G073900"
Ledus.S5	AUGUSTUS	exon	8248952	8249356	.	-	.	transcript_id "Ledus.S5G073900.t1"; gene_id "Ledus.S5G073900"
Ledus.S5	AUGUSTUS	start_codon	8249354	8249356	.	-	0	transcript_id "Ledus.S5G073900.t1"; gene_id "Ledus.S5G073900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6696.t1 is derived from g4139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33333167	33337150	.	+	.	Ledus.S1G411700
Ledus.S1	AUGUSTUS	transcript	33333167	33337150	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	start_codon	33333167	33333169	.	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33333167	33333250	1	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33333167	33333250	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33333251	33333324	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33333325	33333403	1	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33333325	33333403	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33333404	33333488	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33333489	33333562	1	+	2	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33333489	33333562	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33333563	33333634	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33333635	33333695	0.96	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33333635	33333695	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33333696	33333799	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33333800	33333935	0.99	+	2	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33333800	33333935	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33333936	33334052	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33334053	33334128	1	+	1	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33334053	33334128	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33334129	33334286	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33334287	33334382	1	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33334287	33334382	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33334383	33334608	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33334609	33334653	1	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33334609	33334653	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33334654	33334739	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33334740	33334796	1	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33334740	33334796	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33334797	33334893	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33334894	33335049	1	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33334894	33335049	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33335050	33335164	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33335165	33335230	1	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33335165	33335230	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33335231	33335344	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33335345	33335468	0.89	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33335345	33335468	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33335469	33335647	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33335648	33335704	1	+	2	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33335648	33335704	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33335705	33335860	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33335861	33335982	1	+	2	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33335861	33335982	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33335983	33336075	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33336076	33336234	1	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33336076	33336234	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33336235	33336301	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33336302	33336415	0.99	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33336302	33336415	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33336416	33336516	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33336517	33336594	1	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33336517	33336594	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33336595	33336718	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33336719	33336766	1	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33336719	33336766	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33336767	33336853	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33336854	33336922	1	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33336854	33336922	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	intron	33336923	33337036	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	CDS	33337037	33337150	1	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	exon	33337037	33337150	.	+	.	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
Ledus.S1	AUGUSTUS	stop_codon	33337151	33337153	.	+	0	transcript_id "Ledus.S1G411700.t1"; gene_id "Ledus.S1G411700"
# This transcript jg4328.t2 is derived from g1764.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4329.t1 is derived from g1765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16347488	16347838	.	-	.	Ledus.S1G175000
Ledus.S1	AUGUSTUS	transcript	16347488	16347838	.	-	.	transcript_id "Ledus.S1G175000.t1"; gene_id "Ledus.S1G175000"
Ledus.S1	AUGUSTUS	stop_codon	16347485	16347487	.	-	0	transcript_id "Ledus.S1G175000.t1"; gene_id "Ledus.S1G175000"
Ledus.S1	AUGUSTUS	CDS	16347488	16347838	0.36	-	0	transcript_id "Ledus.S1G175000.t1"; gene_id "Ledus.S1G175000"
Ledus.S1	AUGUSTUS	exon	16347488	16347838	.	-	.	transcript_id "Ledus.S1G175000.t1"; gene_id "Ledus.S1G175000"
Ledus.S1	AUGUSTUS	start_codon	16347836	16347838	.	-	0	transcript_id "Ledus.S1G175000.t1"; gene_id "Ledus.S1G175000"
# This transcript jg5013.t2 is derived from g2451.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg5014.t1 is derived from g2452.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21134512	21136121	.	-	.	Ledus.S1G243500
Ledus.S1	AUGUSTUS	transcript	21134512	21136121	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	stop_codon	21134509	21134511	.	-	0	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21134512	21134780	1	-	2	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21134512	21134780	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21134781	21134861	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21134862	21134942	1	-	2	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21134862	21134942	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21134943	21135027	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135028	21135065	1	-	1	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135028	21135065	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135066	21135179	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135180	21135393	1	-	2	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135180	21135393	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135394	21135473	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135474	21135540	1	-	0	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135474	21135540	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135541	21135633	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135634	21135752	1	-	2	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135634	21135752	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135753	21135846	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135847	21135945	1	-	2	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135847	21135945	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135946	21136039	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21136040	21136121	0.93	-	0	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21136040	21136121	.	-	.	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	start_codon	21136119	21136121	.	-	0	transcript_id "Ledus.S1G243500.t1"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	transcript	21134512	21136121	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	stop_codon	21134509	21134511	.	-	0	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21134512	21134780	1	-	2	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21134512	21134780	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21134781	21134861	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21134862	21134942	1	-	2	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21134862	21134942	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21134943	21135027	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135028	21135065	1	-	1	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135028	21135065	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135066	21135179	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135180	21135393	0.98	-	2	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135180	21135393	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135394	21135473	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135474	21135543	1	-	0	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135474	21135543	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135544	21135633	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135634	21135752	1	-	2	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135634	21135752	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135753	21135846	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135847	21135945	1	-	2	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135847	21135945	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135946	21136039	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21136040	21136121	0.92	-	0	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21136040	21136121	.	-	.	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	start_codon	21136119	21136121	.	-	0	transcript_id "Ledus.S1G243500.t2"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	transcript	21134512	21136121	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	stop_codon	21134509	21134511	.	-	0	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21134512	21134780	1	-	2	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21134512	21134780	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21134781	21134861	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21134862	21134942	1	-	2	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21134862	21134942	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21134943	21135027	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135028	21135065	1	-	1	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135028	21135065	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135066	21135179	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135180	21135387	0.96	-	2	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135180	21135387	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135388	21135473	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135474	21135540	0.81	-	0	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135474	21135540	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135541	21135633	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135634	21135752	1	-	2	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135634	21135752	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135753	21135846	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135847	21135945	1	-	2	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135847	21135945	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135946	21136039	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21136040	21136121	0.91	-	0	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21136040	21136121	.	-	.	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	start_codon	21136119	21136121	.	-	0	transcript_id "Ledus.S1G243500.t3"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	transcript	21134512	21136121	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	stop_codon	21134509	21134511	.	-	0	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21134512	21134780	1	-	2	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21134512	21134780	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21134781	21134861	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21134862	21134942	1	-	2	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21134862	21134942	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21134943	21135027	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135028	21135065	1	-	1	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135028	21135065	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135066	21135179	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135180	21135390	0.98	-	2	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135180	21135390	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135391	21135473	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135474	21135540	0.73	-	0	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135474	21135540	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135541	21135633	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135634	21135752	1	-	2	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135634	21135752	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135753	21135846	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21135847	21135945	1	-	2	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21135847	21135945	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	intron	21135946	21136039	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	CDS	21136040	21136121	0.88	-	0	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	exon	21136040	21136121	.	-	.	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
Ledus.S1	AUGUSTUS	start_codon	21136119	21136121	.	-	0	transcript_id "Ledus.S1G243500.t4"; gene_id "Ledus.S1G243500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7791.t1 is derived from g12462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6711213	6711740	.	-	.	Ledus.S5G056900
Ledus.S5	AUGUSTUS	transcript	6711213	6711740	.	-	.	transcript_id "Ledus.S5G056900.t1"; gene_id "Ledus.S5G056900"
Ledus.S5	AUGUSTUS	stop_codon	6711210	6711212	.	-	0	transcript_id "Ledus.S5G056900.t1"; gene_id "Ledus.S5G056900"
Ledus.S5	AUGUSTUS	CDS	6711213	6711740	0.54	-	0	transcript_id "Ledus.S5G056900.t1"; gene_id "Ledus.S5G056900"
Ledus.S5	AUGUSTUS	exon	6711213	6711740	.	-	.	transcript_id "Ledus.S5G056900.t1"; gene_id "Ledus.S5G056900"
Ledus.S5	AUGUSTUS	start_codon	6711738	6711740	.	-	0	transcript_id "Ledus.S5G056900.t1"; gene_id "Ledus.S5G056900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5623.t1 is derived from g3062.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25421815	25428089	.	+	.	Ledus.S1G304400
Ledus.S1	AUGUSTUS	transcript	25421815	25428089	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	start_codon	25421815	25421817	.	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25421815	25421862	0.65	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25421815	25421862	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25421863	25422044	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25422045	25422248	0.89	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25422045	25422248	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25422249	25422311	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25422312	25422533	0.8	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25422312	25422533	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25422534	25422663	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25422664	25422837	0.76	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25422664	25422837	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25422838	25423137	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25423138	25423343	0.91	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25423138	25423343	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25423344	25423541	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25423542	25423727	0.98	+	1	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25423542	25423727	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25423728	25423848	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25423849	25423918	0.95	+	1	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25423849	25423918	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25423919	25424051	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25424052	25424156	0.94	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25424052	25424156	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25424157	25424377	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25424378	25424527	0.97	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25424378	25424527	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25424528	25424656	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25424657	25424810	0.99	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25424657	25424810	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25424811	25424978	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25424979	25425070	0.91	+	2	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25424979	25425070	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25425071	25425166	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25425167	25425349	1	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25425167	25425349	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25425350	25425493	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25425494	25425718	1	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25425494	25425718	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25425719	25425801	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25425802	25425888	1	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25425802	25425888	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25425889	25425987	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25425988	25426094	1	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25425988	25426094	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25426095	25426180	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25426181	25426793	0.77	+	1	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25426181	25426793	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25426794	25426886	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25426887	25426970	0.99	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25426887	25426970	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25426971	25427229	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25427230	25427349	0.99	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25427230	25427349	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25427350	25427461	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25427462	25427548	1	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25427462	25427548	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25427549	25427626	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25427627	25427800	1	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25427627	25427800	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	intron	25427801	25427873	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	CDS	25427874	25428089	0.86	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	exon	25427874	25428089	.	+	.	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
Ledus.S1	AUGUSTUS	stop_codon	25428090	25428092	.	+	0	transcript_id "Ledus.S1G304400.t1"; gene_id "Ledus.S1G304400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8360.t1 is derived from g13032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11073421	11074263	.	-	.	Ledus.S5G113800
Ledus.S5	AUGUSTUS	transcript	11073421	11074263	.	-	.	transcript_id "Ledus.S5G113800.t1"; gene_id "Ledus.S5G113800"
Ledus.S5	AUGUSTUS	stop_codon	11073418	11073420	.	-	0	transcript_id "Ledus.S5G113800.t1"; gene_id "Ledus.S5G113800"
Ledus.S5	AUGUSTUS	CDS	11073421	11073689	1	-	2	transcript_id "Ledus.S5G113800.t1"; gene_id "Ledus.S5G113800"
Ledus.S5	AUGUSTUS	exon	11073421	11073689	.	-	.	transcript_id "Ledus.S5G113800.t1"; gene_id "Ledus.S5G113800"
Ledus.S5	AUGUSTUS	intron	11073690	11073807	.	-	.	transcript_id "Ledus.S5G113800.t1"; gene_id "Ledus.S5G113800"
Ledus.S5	AUGUSTUS	CDS	11073808	11073977	0.67	-	1	transcript_id "Ledus.S5G113800.t1"; gene_id "Ledus.S5G113800"
Ledus.S5	AUGUSTUS	exon	11073808	11073977	.	-	.	transcript_id "Ledus.S5G113800.t1"; gene_id "Ledus.S5G113800"
Ledus.S5	AUGUSTUS	intron	11073978	11074186	.	-	.	transcript_id "Ledus.S5G113800.t1"; gene_id "Ledus.S5G113800"
Ledus.S5	AUGUSTUS	CDS	11074187	11074263	0.6	-	0	transcript_id "Ledus.S5G113800.t1"; gene_id "Ledus.S5G113800"
Ledus.S5	AUGUSTUS	exon	11074187	11074263	.	-	.	transcript_id "Ledus.S5G113800.t1"; gene_id "Ledus.S5G113800"
Ledus.S5	AUGUSTUS	start_codon	11074261	11074263	.	-	0	transcript_id "Ledus.S5G113800.t1"; gene_id "Ledus.S5G113800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2170.t1 is derived from g9033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15584731	15584928	.	+	.	Ledus.S2G205200
Ledus.S2	AUGUSTUS	transcript	15584731	15584928	.	+	.	transcript_id "Ledus.S2G205200.t1"; gene_id "Ledus.S2G205200"
Ledus.S2	AUGUSTUS	start_codon	15584731	15584733	.	+	0	transcript_id "Ledus.S2G205200.t1"; gene_id "Ledus.S2G205200"
Ledus.S2	AUGUSTUS	CDS	15584731	15584928	0.96	+	0	transcript_id "Ledus.S2G205200.t1"; gene_id "Ledus.S2G205200"
Ledus.S2	AUGUSTUS	exon	15584731	15584928	.	+	.	transcript_id "Ledus.S2G205200.t1"; gene_id "Ledus.S2G205200"
Ledus.S2	AUGUSTUS	stop_codon	15584929	15584931	.	+	0	transcript_id "Ledus.S2G205200.t1"; gene_id "Ledus.S2G205200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5145.t1 is derived from g2584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21936015	21942957	.	+	.	Ledus.S1G256600
Ledus.S1	AUGUSTUS	transcript	21936015	21942957	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	start_codon	21936015	21936017	.	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21936015	21936092	0.19	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21936015	21936092	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21936093	21936214	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21936215	21936251	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21936215	21936251	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21936252	21936349	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21936350	21936426	1	+	2	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21936350	21936426	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21936427	21936513	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21936514	21936584	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21936514	21936584	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21936585	21936665	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21936666	21936735	1	+	1	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21936666	21936735	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21936736	21936866	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21936867	21937011	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21936867	21937011	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21937012	21937093	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21937094	21937213	0.82	+	2	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21937094	21937213	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21937214	21937333	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21937334	21937411	1	+	2	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21937334	21937411	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21937412	21937608	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21937609	21937664	1	+	2	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21937609	21937664	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21937665	21937811	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21937812	21937881	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21937812	21937881	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21937882	21938028	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21938029	21938116	1	+	2	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21938029	21938116	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21938117	21938256	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21938257	21938500	1	+	1	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21938257	21938500	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21938501	21938624	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21938625	21938846	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21938625	21938846	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21938847	21938972	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21938973	21939287	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21938973	21939287	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21939288	21939514	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21939515	21939567	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21939515	21939567	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21939568	21939690	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21939691	21939751	1	+	1	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21939691	21939751	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21939752	21939937	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21939938	21940021	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21939938	21940021	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21940022	21940222	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21940223	21940330	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21940223	21940330	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21940331	21940419	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21940420	21940574	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21940420	21940574	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21940575	21940678	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21940679	21940748	1	+	1	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21940679	21940748	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21940749	21940931	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21940932	21941012	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21940932	21941012	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21941013	21941139	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21941140	21941424	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21941140	21941424	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21941425	21941555	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21941556	21941686	1	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21941556	21941686	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	intron	21941687	21942899	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	CDS	21942900	21942957	1	+	1	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	exon	21942900	21942957	.	+	.	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
Ledus.S1	AUGUSTUS	stop_codon	21942958	21942960	.	+	0	transcript_id "Ledus.S1G256600.t1"; gene_id "Ledus.S1G256600"
# This transcript jg11448.t2 is derived from g5066.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11449.t1 is derived from g5067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4375696	4380146	.	-	.	Ledus.S4G060500
Ledus.S4	AUGUSTUS	transcript	4375696	4380146	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	stop_codon	4375693	4375695	.	-	0	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4375696	4375876	0.95	-	1	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4375696	4375876	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4375877	4375979	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4375980	4376092	1	-	0	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4375980	4376092	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4376093	4376189	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4376190	4376324	1	-	0	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4376190	4376324	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4376325	4376476	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4376477	4376608	1	-	0	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4376477	4376608	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4376609	4376697	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4376698	4376831	0.92	-	2	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4376698	4376831	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4376832	4376945	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4376946	4377098	0.99	-	2	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4376946	4377098	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4377099	4377238	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4377239	4377345	1	-	1	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4377239	4377345	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4377346	4377430	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4377431	4377525	1	-	0	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4377431	4377525	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4377526	4377677	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4377678	4377835	1	-	2	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4377678	4377835	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4377836	4377996	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4377997	4378117	1	-	0	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4377997	4378117	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4378118	4378258	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4378259	4378348	1	-	0	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4378259	4378348	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4378349	4378463	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4378464	4378725	0.99	-	1	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4378464	4378725	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4378726	4378850	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4378851	4379021	0.97	-	1	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4378851	4379021	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	intron	4379022	4379193	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	CDS	4379194	4380146	0.83	-	0	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	exon	4379194	4380146	.	-	.	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
Ledus.S4	AUGUSTUS	start_codon	4380144	4380146	.	-	0	transcript_id "Ledus.S4G060500.t1"; gene_id "Ledus.S4G060500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5315.t1 is derived from g2754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23275042	23282624	.	+	.	Ledus.S1G273600
Ledus.S1	AUGUSTUS	transcript	23275042	23282624	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	start_codon	23275042	23275044	.	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23275042	23275274	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23275042	23275274	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23275275	23275475	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23275476	23275571	1	+	1	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23275476	23275571	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23275572	23275702	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23275703	23275787	1	+	1	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23275703	23275787	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23275788	23275864	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23275865	23275915	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23275865	23275915	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23275916	23276006	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23276007	23276177	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23276007	23276177	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23276178	23276376	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23276377	23276531	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23276377	23276531	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23276532	23276743	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23276744	23276852	0.99	+	1	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23276744	23276852	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23276853	23276961	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23276962	23277061	0.99	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23276962	23277061	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23277062	23277188	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23277189	23277244	1	+	2	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23277189	23277244	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23277245	23277373	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23277374	23277439	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23277374	23277439	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23277440	23277514	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23277515	23277597	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23277515	23277597	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23277598	23277789	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23277790	23277923	1	+	1	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23277790	23277923	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23277924	23278083	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23278084	23278294	1	+	2	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23278084	23278294	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23278295	23278420	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23278421	23278552	0.97	+	1	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23278421	23278552	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23278553	23278725	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23278726	23278786	1	+	1	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23278726	23278786	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23278787	23278958	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23278959	23279018	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23278959	23279018	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23279019	23279127	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23279128	23279186	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23279128	23279186	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23279187	23279311	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23279312	23279399	1	+	1	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23279312	23279399	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23279400	23279499	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23279500	23279622	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23279500	23279622	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23279623	23279747	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23279748	23279816	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23279748	23279816	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23279817	23280013	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23280014	23280090	0.59	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23280014	23280090	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23280091	23280618	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23280619	23280633	0.41	+	1	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23280619	23280633	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23280634	23280919	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23280920	23281016	1	+	1	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23280920	23281016	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23281017	23281474	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23281475	23281552	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23281475	23281552	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23281553	23281694	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23281695	23281862	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23281695	23281862	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23281863	23281975	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23281976	23282024	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23281976	23282024	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23282025	23282112	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23282113	23282186	1	+	2	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23282113	23282186	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23282187	23282313	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23282314	23282407	1	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23282314	23282407	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	intron	23282408	23282526	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	CDS	23282527	23282624	0.84	+	2	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	exon	23282527	23282624	.	+	.	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
Ledus.S1	AUGUSTUS	stop_codon	23282625	23282627	.	+	0	transcript_id "Ledus.S1G273600.t1"; gene_id "Ledus.S1G273600"
# This transcript jg5506.t2 is derived from g2945.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5507.t1 is derived from g2946.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24663507	24663959	.	-	.	Ledus.S1G292800
Ledus.S1	AUGUSTUS	transcript	24663507	24663959	.	-	.	transcript_id "Ledus.S1G292800.t1"; gene_id "Ledus.S1G292800"
Ledus.S1	AUGUSTUS	stop_codon	24663504	24663506	.	-	0	transcript_id "Ledus.S1G292800.t1"; gene_id "Ledus.S1G292800"
Ledus.S1	AUGUSTUS	CDS	24663507	24663959	0.54	-	0	transcript_id "Ledus.S1G292800.t1"; gene_id "Ledus.S1G292800"
Ledus.S1	AUGUSTUS	exon	24663507	24663959	.	-	.	transcript_id "Ledus.S1G292800.t1"; gene_id "Ledus.S1G292800"
Ledus.S1	AUGUSTUS	start_codon	24663957	24663959	.	-	0	transcript_id "Ledus.S1G292800.t1"; gene_id "Ledus.S1G292800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10591.t1 is derived from g11621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16271682	16275575	.	+	.	Ledus.S3G206800
Ledus.S3	AUGUSTUS	transcript	16271682	16275575	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	start_codon	16271682	16271684	.	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16271682	16271876	1	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16271682	16271876	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	intron	16271877	16271947	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16271948	16272127	1	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16271948	16272127	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	intron	16272128	16272195	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16272196	16272306	1	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16272196	16272306	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	intron	16272307	16272381	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16272382	16272720	1	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16272382	16272720	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	intron	16272721	16272831	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16272832	16273014	1	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16272832	16273014	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	intron	16273015	16273389	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16273390	16273677	1	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16273390	16273677	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	intron	16273678	16273770	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16273771	16273893	1	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16273771	16273893	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	intron	16273894	16273970	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16273971	16274168	1	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16273971	16274168	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	intron	16274169	16274253	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16274254	16274507	0.99	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16274254	16274507	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	intron	16274508	16274616	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16274617	16274812	0.99	+	1	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16274617	16274812	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	intron	16274813	16274877	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16274878	16275189	1	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16274878	16275189	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	intron	16275190	16275281	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16275282	16275367	1	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16275282	16275367	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	intron	16275368	16275460	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	CDS	16275461	16275575	1	+	1	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	exon	16275461	16275575	.	+	.	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
Ledus.S3	AUGUSTUS	stop_codon	16275576	16275578	.	+	0	transcript_id "Ledus.S3G206800.t1"; gene_id "Ledus.S3G206800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11337.t1 is derived from g4955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3667178	3667920	.	+	.	Ledus.S4G049300
Ledus.S4	AUGUSTUS	transcript	3667178	3667920	.	+	.	transcript_id "Ledus.S4G049300.t1"; gene_id "Ledus.S4G049300"
Ledus.S4	AUGUSTUS	start_codon	3667178	3667180	.	+	0	transcript_id "Ledus.S4G049300.t1"; gene_id "Ledus.S4G049300"
Ledus.S4	AUGUSTUS	CDS	3667178	3667268	1	+	0	transcript_id "Ledus.S4G049300.t1"; gene_id "Ledus.S4G049300"
Ledus.S4	AUGUSTUS	exon	3667178	3667268	.	+	.	transcript_id "Ledus.S4G049300.t1"; gene_id "Ledus.S4G049300"
Ledus.S4	AUGUSTUS	intron	3667269	3667668	.	+	.	transcript_id "Ledus.S4G049300.t1"; gene_id "Ledus.S4G049300"
Ledus.S4	AUGUSTUS	CDS	3667669	3667806	1	+	2	transcript_id "Ledus.S4G049300.t1"; gene_id "Ledus.S4G049300"
Ledus.S4	AUGUSTUS	exon	3667669	3667806	.	+	.	transcript_id "Ledus.S4G049300.t1"; gene_id "Ledus.S4G049300"
Ledus.S4	AUGUSTUS	intron	3667807	3667903	.	+	.	transcript_id "Ledus.S4G049300.t1"; gene_id "Ledus.S4G049300"
Ledus.S4	AUGUSTUS	CDS	3667904	3667920	1	+	2	transcript_id "Ledus.S4G049300.t1"; gene_id "Ledus.S4G049300"
Ledus.S4	AUGUSTUS	exon	3667904	3667920	.	+	.	transcript_id "Ledus.S4G049300.t1"; gene_id "Ledus.S4G049300"
Ledus.S4	AUGUSTUS	stop_codon	3667921	3667923	.	+	0	transcript_id "Ledus.S4G049300.t1"; gene_id "Ledus.S4G049300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1266.t1 is derived from g8127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8991272	8993505	.	-	.	Ledus.S2G114800
Ledus.S2	AUGUSTUS	transcript	8991272	8993505	.	-	.	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	stop_codon	8991269	8991271	.	-	0	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	CDS	8991272	8991502	0.99	-	0	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	exon	8991272	8991502	.	-	.	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	intron	8991503	8991682	.	-	.	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	CDS	8991683	8991886	1	-	0	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	exon	8991683	8991886	.	-	.	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	intron	8991887	8992073	.	-	.	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	CDS	8992074	8992244	1	-	0	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	exon	8992074	8992244	.	-	.	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	intron	8992245	8992482	.	-	.	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	CDS	8992483	8993505	1	-	0	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	exon	8992483	8993505	.	-	.	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
Ledus.S2	AUGUSTUS	start_codon	8993503	8993505	.	-	0	transcript_id "Ledus.S2G114800.t1"; gene_id "Ledus.S2G114800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6030.t1 is derived from g3473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28526047	28526720	.	+	.	Ledus.S1G345100
Ledus.S1	AUGUSTUS	transcript	28526047	28526720	.	+	.	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	start_codon	28526047	28526049	.	+	0	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	CDS	28526047	28526097	0.84	+	0	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	exon	28526047	28526097	.	+	.	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	intron	28526098	28526187	.	+	.	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	CDS	28526188	28526271	0.9	+	0	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	exon	28526188	28526271	.	+	.	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	intron	28526272	28526511	.	+	.	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	CDS	28526512	28526615	0.5	+	0	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	exon	28526512	28526615	.	+	.	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	intron	28526616	28526695	.	+	.	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	CDS	28526696	28526720	0.82	+	1	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	exon	28526696	28526720	.	+	.	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
Ledus.S1	AUGUSTUS	stop_codon	28526721	28526723	.	+	0	transcript_id "Ledus.S1G345100.t1"; gene_id "Ledus.S1G345100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12734.t1 is derived from g6356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14149719	14152663	.	-	.	Ledus.S4G189000
Ledus.S4	AUGUSTUS	transcript	14149719	14152663	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	stop_codon	14149716	14149718	.	-	0	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	CDS	14149719	14149804	1	-	2	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	exon	14149719	14149804	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	intron	14149805	14150237	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	CDS	14150238	14150529	1	-	0	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	exon	14150238	14150529	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	intron	14150530	14150628	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	CDS	14150629	14150677	1	-	1	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	exon	14150629	14150677	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	intron	14150678	14150786	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	CDS	14150787	14151280	0.64	-	0	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	exon	14150787	14151280	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	intron	14151281	14151379	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	CDS	14151380	14151591	1	-	2	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	exon	14151380	14151591	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	intron	14151592	14151715	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	CDS	14151716	14151884	1	-	0	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	exon	14151716	14151884	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	intron	14151885	14151967	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	CDS	14151968	14152663	1	-	0	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	exon	14151968	14152663	.	-	.	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
Ledus.S4	AUGUSTUS	start_codon	14152661	14152663	.	-	0	transcript_id "Ledus.S4G189000.t1"; gene_id "Ledus.S4G189000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2115.t1 is derived from g8978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14793134	14793397	.	+	.	Ledus.S2G199700
Ledus.S2	AUGUSTUS	transcript	14793134	14793397	.	+	.	transcript_id "Ledus.S2G199700.t1"; gene_id "Ledus.S2G199700"
Ledus.S2	AUGUSTUS	start_codon	14793134	14793136	.	+	0	transcript_id "Ledus.S2G199700.t1"; gene_id "Ledus.S2G199700"
Ledus.S2	AUGUSTUS	CDS	14793134	14793397	1	+	0	transcript_id "Ledus.S2G199700.t1"; gene_id "Ledus.S2G199700"
Ledus.S2	AUGUSTUS	exon	14793134	14793397	.	+	.	transcript_id "Ledus.S2G199700.t1"; gene_id "Ledus.S2G199700"
Ledus.S2	AUGUSTUS	stop_codon	14793398	14793400	.	+	0	transcript_id "Ledus.S2G199700.t1"; gene_id "Ledus.S2G199700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6020.t1 is derived from g3463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28463556	28465861	.	+	.	Ledus.S1G344100
Ledus.S1	AUGUSTUS	transcript	28463556	28465861	.	+	.	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	start_codon	28463556	28463558	.	+	0	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	CDS	28463556	28464854	1	+	0	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	exon	28463556	28464854	.	+	.	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	intron	28464855	28464959	.	+	.	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	CDS	28464960	28465127	1	+	0	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	exon	28464960	28465127	.	+	.	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	intron	28465128	28465196	.	+	.	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	CDS	28465197	28465262	1	+	0	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	exon	28465197	28465262	.	+	.	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	intron	28465263	28465368	.	+	.	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	CDS	28465369	28465434	1	+	0	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	exon	28465369	28465434	.	+	.	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	intron	28465435	28465523	.	+	.	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	CDS	28465524	28465568	1	+	0	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	exon	28465524	28465568	.	+	.	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	intron	28465569	28465654	.	+	.	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	CDS	28465655	28465861	1	+	0	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	exon	28465655	28465861	.	+	.	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
Ledus.S1	AUGUSTUS	stop_codon	28465862	28465864	.	+	0	transcript_id "Ledus.S1G344100.t1"; gene_id "Ledus.S1G344100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2625.t1 is derived from g58.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	634065	634545	.	+	.	Ledus.S1G004600
Ledus.S1	AUGUSTUS	transcript	634065	634545	.	+	.	transcript_id "Ledus.S1G004600.t1"; gene_id "Ledus.S1G004600"
Ledus.S1	AUGUSTUS	start_codon	634065	634067	.	+	0	transcript_id "Ledus.S1G004600.t1"; gene_id "Ledus.S1G004600"
Ledus.S1	AUGUSTUS	CDS	634065	634301	0.35	+	0	transcript_id "Ledus.S1G004600.t1"; gene_id "Ledus.S1G004600"
Ledus.S1	AUGUSTUS	exon	634065	634301	.	+	.	transcript_id "Ledus.S1G004600.t1"; gene_id "Ledus.S1G004600"
Ledus.S1	AUGUSTUS	intron	634302	634530	.	+	.	transcript_id "Ledus.S1G004600.t1"; gene_id "Ledus.S1G004600"
Ledus.S1	AUGUSTUS	CDS	634531	634545	0.72	+	0	transcript_id "Ledus.S1G004600.t1"; gene_id "Ledus.S1G004600"
Ledus.S1	AUGUSTUS	exon	634531	634545	.	+	.	transcript_id "Ledus.S1G004600.t1"; gene_id "Ledus.S1G004600"
Ledus.S1	AUGUSTUS	stop_codon	634546	634548	.	+	0	transcript_id "Ledus.S1G004600.t1"; gene_id "Ledus.S1G004600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7084.t1 is derived from g6615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1444357	1445744	.	-	.	Ledus.C7G014500
Ledus.C7	AUGUSTUS	transcript	1444357	1445744	.	-	.	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	stop_codon	1444354	1444356	.	-	0	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	CDS	1444357	1444380	0.8	-	0	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	exon	1444357	1444380	.	-	.	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	intron	1444381	1444610	.	-	.	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	CDS	1444611	1444651	0.77	-	2	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	exon	1444611	1444651	.	-	.	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	intron	1444652	1444929	.	-	.	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	CDS	1444930	1445122	0.54	-	0	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	exon	1444930	1445122	.	-	.	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	intron	1445123	1445454	.	-	.	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	CDS	1445455	1445614	0.98	-	1	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	exon	1445455	1445614	.	-	.	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	intron	1445615	1445712	.	-	.	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	CDS	1445713	1445744	0.52	-	0	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	exon	1445713	1445744	.	-	.	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
Ledus.C7	AUGUSTUS	start_codon	1445742	1445744	.	-	0	transcript_id "Ledus.C7G014500.t1"; gene_id "Ledus.C7G014500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6944.t1 is derived from g6475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	89031	89816	.	+	.	Ledus.C7G000500
Ledus.C7	AUGUSTUS	transcript	89031	89816	.	+	.	transcript_id "Ledus.C7G000500.t1"; gene_id "Ledus.C7G000500"
Ledus.C7	AUGUSTUS	start_codon	89031	89033	.	+	0	transcript_id "Ledus.C7G000500.t1"; gene_id "Ledus.C7G000500"
Ledus.C7	AUGUSTUS	CDS	89031	89816	0.74	+	0	transcript_id "Ledus.C7G000500.t1"; gene_id "Ledus.C7G000500"
Ledus.C7	AUGUSTUS	exon	89031	89816	.	+	.	transcript_id "Ledus.C7G000500.t1"; gene_id "Ledus.C7G000500"
Ledus.C7	AUGUSTUS	stop_codon	89817	89819	.	+	0	transcript_id "Ledus.C7G000500.t1"; gene_id "Ledus.C7G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg169.t1 is derived from g7030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	524482	525720	.	-	.	Ledus.S2G005100
Ledus.S2	AUGUSTUS	transcript	524482	525720	.	-	.	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	stop_codon	524479	524481	.	-	0	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	CDS	524482	524662	1	-	1	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	exon	524482	524662	.	-	.	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	intron	524663	524748	.	-	.	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	CDS	524749	524871	1	-	1	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	exon	524749	524871	.	-	.	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	intron	524872	524952	.	-	.	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	CDS	524953	525076	1	-	2	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	exon	524953	525076	.	-	.	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	intron	525077	525177	.	-	.	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	CDS	525178	525373	1	-	0	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	exon	525178	525373	.	-	.	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	intron	525374	525463	.	-	.	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	CDS	525464	525563	1	-	1	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	exon	525464	525563	.	-	.	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	intron	525564	525634	.	-	.	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	CDS	525635	525720	0.85	-	0	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	exon	525635	525720	.	-	.	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
Ledus.S2	AUGUSTUS	start_codon	525718	525720	.	-	0	transcript_id "Ledus.S2G005100.t1"; gene_id "Ledus.S2G005100"
# This transcript jg4839.t2 is derived from g2277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4840.t1 is derived from g2278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20080402	20081173	.	-	.	Ledus.S1G226100
Ledus.S1	AUGUSTUS	transcript	20080402	20081173	.	-	.	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	stop_codon	20080399	20080401	.	-	0	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	CDS	20080402	20080513	0.47	-	1	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	exon	20080402	20080513	.	-	.	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	intron	20080514	20080621	.	-	.	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	CDS	20080622	20080757	0.94	-	2	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	exon	20080622	20080757	.	-	.	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	intron	20080758	20080879	.	-	.	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	CDS	20080880	20080980	0.55	-	1	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	exon	20080880	20080980	.	-	.	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	intron	20080981	20081147	.	-	.	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	CDS	20081148	20081173	0.51	-	0	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	exon	20081148	20081173	.	-	.	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
Ledus.S1	AUGUSTUS	start_codon	20081171	20081173	.	-	0	transcript_id "Ledus.S1G226100.t1"; gene_id "Ledus.S1G226100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5796.t1 is derived from g3238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26950191	26950394	.	-	.	Ledus.S1G321700
Ledus.S1	AUGUSTUS	transcript	26950191	26950394	.	-	.	transcript_id "Ledus.S1G321700.t1"; gene_id "Ledus.S1G321700"
Ledus.S1	AUGUSTUS	stop_codon	26950188	26950190	.	-	0	transcript_id "Ledus.S1G321700.t1"; gene_id "Ledus.S1G321700"
Ledus.S1	AUGUSTUS	CDS	26950191	26950394	0.9	-	0	transcript_id "Ledus.S1G321700.t1"; gene_id "Ledus.S1G321700"
Ledus.S1	AUGUSTUS	exon	26950191	26950394	.	-	.	transcript_id "Ledus.S1G321700.t1"; gene_id "Ledus.S1G321700"
Ledus.S1	AUGUSTUS	start_codon	26950392	26950394	.	-	0	transcript_id "Ledus.S1G321700.t1"; gene_id "Ledus.S1G321700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7725.t1 is derived from g12396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5586288	5588698	.	-	.	Ledus.S5G050300
Ledus.S5	AUGUSTUS	transcript	5586288	5588698	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	stop_codon	5586285	5586287	.	-	0	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	CDS	5586288	5586484	1	-	2	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	exon	5586288	5586484	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	intron	5586485	5586574	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	CDS	5586575	5586663	1	-	1	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	exon	5586575	5586663	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	intron	5586664	5586740	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	CDS	5586741	5586880	0.87	-	0	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	exon	5586741	5586880	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	intron	5586881	5586972	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	CDS	5586973	5587083	0.85	-	0	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	exon	5586973	5587083	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	intron	5587084	5587187	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	CDS	5587188	5587298	0.84	-	0	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	exon	5587188	5587298	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	intron	5587299	5587372	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	CDS	5587373	5587444	1	-	0	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	exon	5587373	5587444	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	intron	5587445	5587540	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	CDS	5587541	5587693	0.96	-	0	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	exon	5587541	5587693	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	intron	5587694	5587912	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	CDS	5587913	5588077	0.99	-	0	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	exon	5587913	5588077	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	intron	5588078	5588164	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	CDS	5588165	5588326	1	-	0	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	exon	5588165	5588326	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	intron	5588327	5588413	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	CDS	5588414	5588698	0.95	-	0	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	exon	5588414	5588698	.	-	.	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
Ledus.S5	AUGUSTUS	start_codon	5588696	5588698	.	-	0	transcript_id "Ledus.S5G050300.t1"; gene_id "Ledus.S5G050300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12005.t1 is derived from g5624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8417486	8418161	.	+	.	Ledus.S4G116100
Ledus.S4	AUGUSTUS	transcript	8417486	8418161	.	+	.	transcript_id "Ledus.S4G116100.t1"; gene_id "Ledus.S4G116100"
Ledus.S4	AUGUSTUS	start_codon	8417486	8417488	.	+	0	transcript_id "Ledus.S4G116100.t1"; gene_id "Ledus.S4G116100"
Ledus.S4	AUGUSTUS	CDS	8417486	8417540	0.96	+	0	transcript_id "Ledus.S4G116100.t1"; gene_id "Ledus.S4G116100"
Ledus.S4	AUGUSTUS	exon	8417486	8417540	.	+	.	transcript_id "Ledus.S4G116100.t1"; gene_id "Ledus.S4G116100"
Ledus.S4	AUGUSTUS	intron	8417541	8417621	.	+	.	transcript_id "Ledus.S4G116100.t1"; gene_id "Ledus.S4G116100"
Ledus.S4	AUGUSTUS	CDS	8417622	8417735	1	+	2	transcript_id "Ledus.S4G116100.t1"; gene_id "Ledus.S4G116100"
Ledus.S4	AUGUSTUS	exon	8417622	8417735	.	+	.	transcript_id "Ledus.S4G116100.t1"; gene_id "Ledus.S4G116100"
Ledus.S4	AUGUSTUS	intron	8417736	8417823	.	+	.	transcript_id "Ledus.S4G116100.t1"; gene_id "Ledus.S4G116100"
Ledus.S4	AUGUSTUS	CDS	8417824	8418161	1	+	2	transcript_id "Ledus.S4G116100.t1"; gene_id "Ledus.S4G116100"
Ledus.S4	AUGUSTUS	exon	8417824	8418161	.	+	.	transcript_id "Ledus.S4G116100.t1"; gene_id "Ledus.S4G116100"
Ledus.S4	AUGUSTUS	stop_codon	8418162	8418164	.	+	0	transcript_id "Ledus.S4G116100.t1"; gene_id "Ledus.S4G116100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10928.t1 is derived from g4546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	631387	633486	.	+	.	Ledus.S4G008400
Ledus.S4	AUGUSTUS	transcript	631387	633486	.	+	.	transcript_id "Ledus.S4G008400.t1"; gene_id "Ledus.S4G008400"
Ledus.S4	AUGUSTUS	start_codon	631387	631389	.	+	0	transcript_id "Ledus.S4G008400.t1"; gene_id "Ledus.S4G008400"
Ledus.S4	AUGUSTUS	CDS	631387	633486	0.27	+	0	transcript_id "Ledus.S4G008400.t1"; gene_id "Ledus.S4G008400"
Ledus.S4	AUGUSTUS	exon	631387	633486	.	+	.	transcript_id "Ledus.S4G008400.t1"; gene_id "Ledus.S4G008400"
Ledus.S4	AUGUSTUS	stop_codon	633487	633489	.	+	0	transcript_id "Ledus.S4G008400.t1"; gene_id "Ledus.S4G008400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4228.t1 is derived from g1664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15653613	15656001	.	+	.	Ledus.S1G164900
Ledus.S1	AUGUSTUS	transcript	15653613	15656001	.	+	.	transcript_id "Ledus.S1G164900.t1"; gene_id "Ledus.S1G164900"
Ledus.S1	AUGUSTUS	start_codon	15653613	15653615	.	+	0	transcript_id "Ledus.S1G164900.t1"; gene_id "Ledus.S1G164900"
Ledus.S1	AUGUSTUS	CDS	15653613	15655629	0.64	+	0	transcript_id "Ledus.S1G164900.t1"; gene_id "Ledus.S1G164900"
Ledus.S1	AUGUSTUS	exon	15653613	15655629	.	+	.	transcript_id "Ledus.S1G164900.t1"; gene_id "Ledus.S1G164900"
Ledus.S1	AUGUSTUS	intron	15655630	15655716	.	+	.	transcript_id "Ledus.S1G164900.t1"; gene_id "Ledus.S1G164900"
Ledus.S1	AUGUSTUS	CDS	15655717	15655796	1	+	2	transcript_id "Ledus.S1G164900.t1"; gene_id "Ledus.S1G164900"
Ledus.S1	AUGUSTUS	exon	15655717	15655796	.	+	.	transcript_id "Ledus.S1G164900.t1"; gene_id "Ledus.S1G164900"
Ledus.S1	AUGUSTUS	intron	15655797	15655944	.	+	.	transcript_id "Ledus.S1G164900.t1"; gene_id "Ledus.S1G164900"
Ledus.S1	AUGUSTUS	CDS	15655945	15656001	0.98	+	0	transcript_id "Ledus.S1G164900.t1"; gene_id "Ledus.S1G164900"
Ledus.S1	AUGUSTUS	exon	15655945	15656001	.	+	.	transcript_id "Ledus.S1G164900.t1"; gene_id "Ledus.S1G164900"
Ledus.S1	AUGUSTUS	stop_codon	15656002	15656004	.	+	0	transcript_id "Ledus.S1G164900.t1"; gene_id "Ledus.S1G164900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4630.t1 is derived from g2067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18368091	18369164	.	+	.	Ledus.S1G205100
Ledus.S1	AUGUSTUS	transcript	18368091	18369164	.	+	.	transcript_id "Ledus.S1G205100.t1"; gene_id "Ledus.S1G205100"
Ledus.S1	AUGUSTUS	start_codon	18368091	18368093	.	+	0	transcript_id "Ledus.S1G205100.t1"; gene_id "Ledus.S1G205100"
Ledus.S1	AUGUSTUS	CDS	18368091	18369164	0.91	+	0	transcript_id "Ledus.S1G205100.t1"; gene_id "Ledus.S1G205100"
Ledus.S1	AUGUSTUS	exon	18368091	18369164	.	+	.	transcript_id "Ledus.S1G205100.t1"; gene_id "Ledus.S1G205100"
Ledus.S1	AUGUSTUS	stop_codon	18369165	18369167	.	+	0	transcript_id "Ledus.S1G205100.t1"; gene_id "Ledus.S1G205100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2479.t1 is derived from g9342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18381885	18383480	.	-	.	Ledus.S2G236100
Ledus.S2	AUGUSTUS	transcript	18381885	18383480	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	stop_codon	18381882	18381884	.	-	0	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	CDS	18381885	18382016	0.58	-	0	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	exon	18381885	18382016	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	intron	18382017	18382108	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	CDS	18382109	18382206	1	-	2	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	exon	18382109	18382206	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	intron	18382207	18382318	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	CDS	18382319	18382365	0.99	-	1	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	exon	18382319	18382365	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	intron	18382366	18382518	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	CDS	18382519	18382586	1	-	0	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	exon	18382519	18382586	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	intron	18382587	18382723	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	CDS	18382724	18382777	1	-	0	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	exon	18382724	18382777	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	intron	18382778	18382876	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	CDS	18382877	18382965	1	-	2	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	exon	18382877	18382965	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	intron	18382966	18383100	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	CDS	18383101	18383148	1	-	2	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	exon	18383101	18383148	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	intron	18383149	18383248	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	CDS	18383249	18383325	1	-	1	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	exon	18383249	18383325	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	intron	18383326	18383415	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	CDS	18383416	18383480	1	-	0	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	exon	18383416	18383480	.	-	.	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
Ledus.S2	AUGUSTUS	start_codon	18383478	18383480	.	-	0	transcript_id "Ledus.S2G236100.t1"; gene_id "Ledus.S2G236100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7579.t1 is derived from g12250.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4170885	4171764	.	-	.	Ledus.S5G035700
Ledus.S5	AUGUSTUS	transcript	4170885	4171764	.	-	.	transcript_id "Ledus.S5G035700.t1"; gene_id "Ledus.S5G035700"
Ledus.S5	AUGUSTUS	stop_codon	4170882	4170884	.	-	0	transcript_id "Ledus.S5G035700.t1"; gene_id "Ledus.S5G035700"
Ledus.S5	AUGUSTUS	CDS	4170885	4171031	0.21	-	0	transcript_id "Ledus.S5G035700.t1"; gene_id "Ledus.S5G035700"
Ledus.S5	AUGUSTUS	exon	4170885	4171031	.	-	.	transcript_id "Ledus.S5G035700.t1"; gene_id "Ledus.S5G035700"
Ledus.S5	AUGUSTUS	intron	4171032	4171139	.	-	.	transcript_id "Ledus.S5G035700.t1"; gene_id "Ledus.S5G035700"
Ledus.S5	AUGUSTUS	CDS	4171140	4171250	0.87	-	0	transcript_id "Ledus.S5G035700.t1"; gene_id "Ledus.S5G035700"
Ledus.S5	AUGUSTUS	exon	4171140	4171250	.	-	.	transcript_id "Ledus.S5G035700.t1"; gene_id "Ledus.S5G035700"
Ledus.S5	AUGUSTUS	intron	4171251	4171596	.	-	.	transcript_id "Ledus.S5G035700.t1"; gene_id "Ledus.S5G035700"
Ledus.S5	AUGUSTUS	CDS	4171597	4171764	0.8	-	0	transcript_id "Ledus.S5G035700.t1"; gene_id "Ledus.S5G035700"
Ledus.S5	AUGUSTUS	exon	4171597	4171764	.	-	.	transcript_id "Ledus.S5G035700.t1"; gene_id "Ledus.S5G035700"
Ledus.S5	AUGUSTUS	start_codon	4171762	4171764	.	-	0	transcript_id "Ledus.S5G035700.t1"; gene_id "Ledus.S5G035700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11648.t1 is derived from g5267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5727344	5730491	.	-	.	Ledus.S4G080400
Ledus.S4	AUGUSTUS	transcript	5727344	5730491	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	stop_codon	5727341	5727343	.	-	0	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5727344	5727502	1	-	0	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5727344	5727502	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	intron	5727503	5727584	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5727585	5727661	1	-	2	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5727585	5727661	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	intron	5727662	5727755	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5727756	5727841	1	-	1	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5727756	5727841	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	intron	5727842	5727925	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5727926	5728116	1	-	0	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5727926	5728116	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	intron	5728117	5728217	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5728218	5728504	1	-	2	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5728218	5728504	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	intron	5728505	5728594	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5728595	5728721	1	-	0	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5728595	5728721	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	intron	5728722	5728814	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5728815	5728931	1	-	0	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5728815	5728931	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	intron	5728932	5729038	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5729039	5729152	1	-	0	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5729039	5729152	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	intron	5729153	5729251	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5729252	5729317	1	-	0	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5729252	5729317	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	intron	5729318	5729426	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5729427	5729604	1	-	1	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5729427	5729604	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	intron	5729605	5729692	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5729693	5729909	1	-	2	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5729693	5729909	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	intron	5729910	5729997	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5729998	5730046	1	-	0	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5729998	5730046	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	intron	5730047	5730140	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	CDS	5730141	5730491	0.92	-	0	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	exon	5730141	5730491	.	-	.	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
Ledus.S4	AUGUSTUS	start_codon	5730489	5730491	.	-	0	transcript_id "Ledus.S4G080400.t1"; gene_id "Ledus.S4G080400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12359.t1 is derived from g5980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11428364	11429614	.	+	.	Ledus.S4G151500
Ledus.S4	AUGUSTUS	transcript	11428364	11429614	.	+	.	transcript_id "Ledus.S4G151500.t1"; gene_id "Ledus.S4G151500"
Ledus.S4	AUGUSTUS	start_codon	11428364	11428366	.	+	0	transcript_id "Ledus.S4G151500.t1"; gene_id "Ledus.S4G151500"
Ledus.S4	AUGUSTUS	CDS	11428364	11429614	0.86	+	0	transcript_id "Ledus.S4G151500.t1"; gene_id "Ledus.S4G151500"
Ledus.S4	AUGUSTUS	exon	11428364	11429614	.	+	.	transcript_id "Ledus.S4G151500.t1"; gene_id "Ledus.S4G151500"
Ledus.S4	AUGUSTUS	stop_codon	11429615	11429617	.	+	0	transcript_id "Ledus.S4G151500.t1"; gene_id "Ledus.S4G151500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8108.t1 is derived from g12779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9160844	9166171	.	-	.	Ledus.S5G088600
Ledus.S5	AUGUSTUS	transcript	9160844	9166171	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	stop_codon	9160841	9160843	.	-	0	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	CDS	9160844	9160902	0.9	-	2	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	exon	9160844	9160902	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	intron	9160903	9161073	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	CDS	9161074	9161476	0.75	-	0	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	exon	9161074	9161476	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	intron	9161477	9161563	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	CDS	9161564	9161675	1	-	1	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	exon	9161564	9161675	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	intron	9161676	9161930	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	CDS	9161931	9163957	1	-	0	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	exon	9161931	9163957	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	intron	9163958	9164122	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	CDS	9164123	9164254	1	-	0	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	exon	9164123	9164254	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	intron	9164255	9164386	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	CDS	9164387	9164470	1	-	0	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	exon	9164387	9164470	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	intron	9164471	9164609	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	CDS	9164610	9164880	1	-	1	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	exon	9164610	9164880	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	intron	9164881	9165004	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	CDS	9165005	9165258	1	-	0	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	exon	9165005	9165258	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	intron	9165259	9165385	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	CDS	9165386	9165595	1	-	0	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	exon	9165386	9165595	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	intron	9165596	9165802	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	CDS	9165803	9166171	0.7	-	0	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	exon	9165803	9166171	.	-	.	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
Ledus.S5	AUGUSTUS	start_codon	9166169	9166171	.	-	0	transcript_id "Ledus.S5G088600.t1"; gene_id "Ledus.S5G088600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5225.t1 is derived from g2664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22567928	22568768	.	-	.	Ledus.S1G264600
Ledus.S1	AUGUSTUS	transcript	22567928	22568768	.	-	.	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	stop_codon	22567925	22567927	.	-	0	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	CDS	22567928	22568116	1	-	0	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	exon	22567928	22568116	.	-	.	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	intron	22568117	22568194	.	-	.	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	CDS	22568195	22568355	1	-	2	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	exon	22568195	22568355	.	-	.	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	intron	22568356	22568478	.	-	.	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	CDS	22568479	22568577	1	-	2	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	exon	22568479	22568577	.	-	.	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	intron	22568578	22568662	.	-	.	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	CDS	22568663	22568768	0.74	-	0	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	exon	22568663	22568768	.	-	.	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
Ledus.S1	AUGUSTUS	start_codon	22568766	22568768	.	-	0	transcript_id "Ledus.S1G264600.t1"; gene_id "Ledus.S1G264600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg733.t1 is derived from g7594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4671126	4671386	.	-	.	Ledus.S2G061500
Ledus.S2	AUGUSTUS	transcript	4671126	4671386	.	-	.	transcript_id "Ledus.S2G061500.t1"; gene_id "Ledus.S2G061500"
Ledus.S2	AUGUSTUS	stop_codon	4671123	4671125	.	-	0	transcript_id "Ledus.S2G061500.t1"; gene_id "Ledus.S2G061500"
Ledus.S2	AUGUSTUS	CDS	4671126	4671386	0.72	-	0	transcript_id "Ledus.S2G061500.t1"; gene_id "Ledus.S2G061500"
Ledus.S2	AUGUSTUS	exon	4671126	4671386	.	-	.	transcript_id "Ledus.S2G061500.t1"; gene_id "Ledus.S2G061500"
Ledus.S2	AUGUSTUS	start_codon	4671384	4671386	.	-	0	transcript_id "Ledus.S2G061500.t1"; gene_id "Ledus.S2G061500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4797.t1 is derived from g2235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19807312	19808374	.	+	.	Ledus.S1G221800
Ledus.S1	AUGUSTUS	transcript	19807312	19808374	.	+	.	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	start_codon	19807312	19807314	.	+	0	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	CDS	19807312	19807466	0.6	+	0	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	exon	19807312	19807466	.	+	.	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	intron	19807467	19807648	.	+	.	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	CDS	19807649	19807737	0.75	+	1	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	exon	19807649	19807737	.	+	.	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	intron	19807738	19807898	.	+	.	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	CDS	19807899	19808026	0.76	+	2	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	exon	19807899	19808026	.	+	.	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	intron	19808027	19808203	.	+	.	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	CDS	19808204	19808374	0.73	+	0	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	exon	19808204	19808374	.	+	.	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
Ledus.S1	AUGUSTUS	stop_codon	19808375	19808377	.	+	0	transcript_id "Ledus.S1G221800.t1"; gene_id "Ledus.S1G221800"
# This transcript jg2563.t2 is derived from g9426.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2564.t1 is derived from g9427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18999430	19001113	.	-	.	Ledus.S2G244600
Ledus.S2	AUGUSTUS	transcript	18999430	19001113	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	stop_codon	18999427	18999429	.	-	0	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	CDS	18999430	18999486	0.97	-	0	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	exon	18999430	18999486	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	intron	18999487	18999596	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	CDS	18999597	18999680	1	-	0	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	exon	18999597	18999680	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	intron	18999681	18999820	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	CDS	18999821	18999888	1	-	2	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	exon	18999821	18999888	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	intron	18999889	19000044	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	CDS	19000045	19000126	1	-	0	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	exon	19000045	19000126	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	intron	19000127	19000209	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	CDS	19000210	19000277	1	-	2	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	exon	19000210	19000277	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	intron	19000278	19000376	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	CDS	19000377	19000439	1	-	2	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	exon	19000377	19000439	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	intron	19000440	19000607	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	CDS	19000608	19000712	1	-	2	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	exon	19000608	19000712	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	intron	19000713	19001070	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	CDS	19001071	19001113	1	-	0	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	exon	19001071	19001113	.	-	.	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
Ledus.S2	AUGUSTUS	start_codon	19001111	19001113	.	-	0	transcript_id "Ledus.S2G244600.t1"; gene_id "Ledus.S2G244600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9172.t1 is derived from g10202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5227278	5228007	.	-	.	Ledus.S3G064900
Ledus.S3	AUGUSTUS	transcript	5227278	5228007	.	-	.	transcript_id "Ledus.S3G064900.t1"; gene_id "Ledus.S3G064900"
Ledus.S3	AUGUSTUS	stop_codon	5227275	5227277	.	-	0	transcript_id "Ledus.S3G064900.t1"; gene_id "Ledus.S3G064900"
Ledus.S3	AUGUSTUS	CDS	5227278	5227680	0.82	-	1	transcript_id "Ledus.S3G064900.t1"; gene_id "Ledus.S3G064900"
Ledus.S3	AUGUSTUS	exon	5227278	5227680	.	-	.	transcript_id "Ledus.S3G064900.t1"; gene_id "Ledus.S3G064900"
Ledus.S3	AUGUSTUS	intron	5227681	5227804	.	-	.	transcript_id "Ledus.S3G064900.t1"; gene_id "Ledus.S3G064900"
Ledus.S3	AUGUSTUS	CDS	5227805	5228007	0.8	-	0	transcript_id "Ledus.S3G064900.t1"; gene_id "Ledus.S3G064900"
Ledus.S3	AUGUSTUS	exon	5227805	5228007	.	-	.	transcript_id "Ledus.S3G064900.t1"; gene_id "Ledus.S3G064900"
Ledus.S3	AUGUSTUS	start_codon	5228005	5228007	.	-	0	transcript_id "Ledus.S3G064900.t1"; gene_id "Ledus.S3G064900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2508.t1 is derived from g9371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18517121	18522790	.	+	.	Ledus.S2G239000
Ledus.S2	AUGUSTUS	transcript	18517121	18522790	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	start_codon	18517121	18517123	.	+	0	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18517121	18517164	0.72	+	0	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18517121	18517164	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18517165	18517248	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18517249	18517340	0.69	+	1	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18517249	18517340	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18517341	18517632	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18517633	18517766	0.58	+	2	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18517633	18517766	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18517767	18517860	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18517861	18517931	0.99	+	0	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18517861	18517931	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18517932	18518028	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18518029	18518119	1	+	1	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18518029	18518119	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18518120	18518216	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18518217	18518266	1	+	0	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18518217	18518266	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18518267	18518379	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18518380	18518422	1	+	1	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18518380	18518422	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18518423	18518498	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18518499	18518602	1	+	0	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18518499	18518602	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18518603	18518688	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18518689	18518754	1	+	1	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18518689	18518754	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18518755	18518832	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18518833	18519141	0.99	+	1	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18518833	18519141	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18519142	18519232	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18519233	18519705	0.75	+	1	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18519233	18519705	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18519706	18519920	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18519921	18520423	0.59	+	2	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18519921	18520423	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18520424	18520513	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18520514	18520588	1	+	0	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18520514	18520588	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18520589	18520810	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18520811	18522451	1	+	0	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18520811	18522451	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	intron	18522452	18522541	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	CDS	18522542	18522790	0.46	+	0	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	exon	18522542	18522790	.	+	.	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
Ledus.S2	AUGUSTUS	stop_codon	18522791	18522793	.	+	0	transcript_id "Ledus.S2G239000.t1"; gene_id "Ledus.S2G239000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9302.t1 is derived from g10332.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5885111	5885416	.	+	.	Ledus.S3G077900
Ledus.S3	AUGUSTUS	transcript	5885111	5885416	.	+	.	transcript_id "Ledus.S3G077900.t1"; gene_id "Ledus.S3G077900"
Ledus.S3	AUGUSTUS	start_codon	5885111	5885113	.	+	0	transcript_id "Ledus.S3G077900.t1"; gene_id "Ledus.S3G077900"
Ledus.S3	AUGUSTUS	CDS	5885111	5885416	0.26	+	0	transcript_id "Ledus.S3G077900.t1"; gene_id "Ledus.S3G077900"
Ledus.S3	AUGUSTUS	exon	5885111	5885416	.	+	.	transcript_id "Ledus.S3G077900.t1"; gene_id "Ledus.S3G077900"
Ledus.S3	AUGUSTUS	stop_codon	5885417	5885419	.	+	0	transcript_id "Ledus.S3G077900.t1"; gene_id "Ledus.S3G077900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3931.t1 is derived from g1367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13610267	13610665	.	-	.	Ledus.S1G135200
Ledus.S1	AUGUSTUS	transcript	13610267	13610665	.	-	.	transcript_id "Ledus.S1G135200.t1"; gene_id "Ledus.S1G135200"
Ledus.S1	AUGUSTUS	stop_codon	13610264	13610266	.	-	0	transcript_id "Ledus.S1G135200.t1"; gene_id "Ledus.S1G135200"
Ledus.S1	AUGUSTUS	CDS	13610267	13610665	0.83	-	0	transcript_id "Ledus.S1G135200.t1"; gene_id "Ledus.S1G135200"
Ledus.S1	AUGUSTUS	exon	13610267	13610665	.	-	.	transcript_id "Ledus.S1G135200.t1"; gene_id "Ledus.S1G135200"
Ledus.S1	AUGUSTUS	start_codon	13610663	13610665	.	-	0	transcript_id "Ledus.S1G135200.t1"; gene_id "Ledus.S1G135200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5901.t1 is derived from g3344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27691938	27692769	.	+	.	Ledus.S1G332200
Ledus.S1	AUGUSTUS	transcript	27691938	27692769	.	+	.	transcript_id "Ledus.S1G332200.t1"; gene_id "Ledus.S1G332200"
Ledus.S1	AUGUSTUS	start_codon	27691938	27691940	.	+	0	transcript_id "Ledus.S1G332200.t1"; gene_id "Ledus.S1G332200"
Ledus.S1	AUGUSTUS	CDS	27691938	27692061	0.97	+	0	transcript_id "Ledus.S1G332200.t1"; gene_id "Ledus.S1G332200"
Ledus.S1	AUGUSTUS	exon	27691938	27692061	.	+	.	transcript_id "Ledus.S1G332200.t1"; gene_id "Ledus.S1G332200"
Ledus.S1	AUGUSTUS	intron	27692062	27692137	.	+	.	transcript_id "Ledus.S1G332200.t1"; gene_id "Ledus.S1G332200"
Ledus.S1	AUGUSTUS	CDS	27692138	27692769	0.96	+	2	transcript_id "Ledus.S1G332200.t1"; gene_id "Ledus.S1G332200"
Ledus.S1	AUGUSTUS	exon	27692138	27692769	.	+	.	transcript_id "Ledus.S1G332200.t1"; gene_id "Ledus.S1G332200"
Ledus.S1	AUGUSTUS	stop_codon	27692770	27692772	.	+	0	transcript_id "Ledus.S1G332200.t1"; gene_id "Ledus.S1G332200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3034.t1 is derived from g469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5406317	5408393	.	-	.	Ledus.S1G045500
Ledus.S1	AUGUSTUS	transcript	5406317	5408393	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	stop_codon	5406314	5406316	.	-	0	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	CDS	5406317	5406409	1	-	0	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	exon	5406317	5406409	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	intron	5406410	5406500	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	CDS	5406501	5406739	1	-	2	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	exon	5406501	5406739	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	intron	5406740	5407003	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	CDS	5407004	5407224	1	-	1	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	exon	5407004	5407224	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	intron	5407225	5407386	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	CDS	5407387	5407517	1	-	0	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	exon	5407387	5407517	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	intron	5407518	5407641	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	CDS	5407642	5407763	1	-	2	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	exon	5407642	5407763	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	intron	5407764	5407911	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	CDS	5407912	5407944	1	-	2	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	exon	5407912	5407944	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	intron	5407945	5408171	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	CDS	5408172	5408196	0.99	-	0	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	exon	5408172	5408196	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	intron	5408197	5408300	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	CDS	5408301	5408393	0.96	-	0	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	exon	5408301	5408393	.	-	.	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
Ledus.S1	AUGUSTUS	start_codon	5408391	5408393	.	-	0	transcript_id "Ledus.S1G045500.t1"; gene_id "Ledus.S1G045500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5893.t1 is derived from g3336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27649711	27649974	.	+	.	Ledus.S1G331400
Ledus.S1	AUGUSTUS	transcript	27649711	27649974	.	+	.	transcript_id "Ledus.S1G331400.t1"; gene_id "Ledus.S1G331400"
Ledus.S1	AUGUSTUS	start_codon	27649711	27649713	.	+	0	transcript_id "Ledus.S1G331400.t1"; gene_id "Ledus.S1G331400"
Ledus.S1	AUGUSTUS	CDS	27649711	27649974	0.93	+	0	transcript_id "Ledus.S1G331400.t1"; gene_id "Ledus.S1G331400"
Ledus.S1	AUGUSTUS	exon	27649711	27649974	.	+	.	transcript_id "Ledus.S1G331400.t1"; gene_id "Ledus.S1G331400"
Ledus.S1	AUGUSTUS	stop_codon	27649975	27649977	.	+	0	transcript_id "Ledus.S1G331400.t1"; gene_id "Ledus.S1G331400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg614.t1 is derived from g7475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3666006	3667210	.	-	.	Ledus.S2G049600
Ledus.S2	AUGUSTUS	transcript	3666006	3667210	.	-	.	transcript_id "Ledus.S2G049600.t1"; gene_id "Ledus.S2G049600"
Ledus.S2	AUGUSTUS	stop_codon	3666003	3666005	.	-	0	transcript_id "Ledus.S2G049600.t1"; gene_id "Ledus.S2G049600"
Ledus.S2	AUGUSTUS	CDS	3666006	3666433	0.93	-	2	transcript_id "Ledus.S2G049600.t1"; gene_id "Ledus.S2G049600"
Ledus.S2	AUGUSTUS	exon	3666006	3666433	.	-	.	transcript_id "Ledus.S2G049600.t1"; gene_id "Ledus.S2G049600"
Ledus.S2	AUGUSTUS	intron	3666434	3666524	.	-	.	transcript_id "Ledus.S2G049600.t1"; gene_id "Ledus.S2G049600"
Ledus.S2	AUGUSTUS	CDS	3666525	3666888	0.69	-	0	transcript_id "Ledus.S2G049600.t1"; gene_id "Ledus.S2G049600"
Ledus.S2	AUGUSTUS	exon	3666525	3666888	.	-	.	transcript_id "Ledus.S2G049600.t1"; gene_id "Ledus.S2G049600"
Ledus.S2	AUGUSTUS	intron	3666889	3666973	.	-	.	transcript_id "Ledus.S2G049600.t1"; gene_id "Ledus.S2G049600"
Ledus.S2	AUGUSTUS	CDS	3666974	3667210	0.55	-	0	transcript_id "Ledus.S2G049600.t1"; gene_id "Ledus.S2G049600"
Ledus.S2	AUGUSTUS	exon	3666974	3667210	.	-	.	transcript_id "Ledus.S2G049600.t1"; gene_id "Ledus.S2G049600"
Ledus.S2	AUGUSTUS	start_codon	3667208	3667210	.	-	0	transcript_id "Ledus.S2G049600.t1"; gene_id "Ledus.S2G049600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5830.t1 is derived from g3272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27199217	27200002	.	+	.	Ledus.S1G325100
Ledus.S1	AUGUSTUS	transcript	27199217	27200002	.	+	.	transcript_id "Ledus.S1G325100.t1"; gene_id "Ledus.S1G325100"
Ledus.S1	AUGUSTUS	start_codon	27199217	27199219	.	+	0	transcript_id "Ledus.S1G325100.t1"; gene_id "Ledus.S1G325100"
Ledus.S1	AUGUSTUS	CDS	27199217	27200002	1	+	0	transcript_id "Ledus.S1G325100.t1"; gene_id "Ledus.S1G325100"
Ledus.S1	AUGUSTUS	exon	27199217	27200002	.	+	.	transcript_id "Ledus.S1G325100.t1"; gene_id "Ledus.S1G325100"
Ledus.S1	AUGUSTUS	stop_codon	27200003	27200005	.	+	0	transcript_id "Ledus.S1G325100.t1"; gene_id "Ledus.S1G325100"
Ledus.S1	AUGUSTUS	transcript	27199355	27200002	.	+	.	transcript_id "Ledus.S1G325100.t2"; gene_id "Ledus.S1G325100"
Ledus.S1	AUGUSTUS	start_codon	27199355	27199357	.	+	0	transcript_id "Ledus.S1G325100.t2"; gene_id "Ledus.S1G325100"
Ledus.S1	AUGUSTUS	CDS	27199355	27200002	0.99	+	0	transcript_id "Ledus.S1G325100.t2"; gene_id "Ledus.S1G325100"
Ledus.S1	AUGUSTUS	exon	27199355	27200002	.	+	.	transcript_id "Ledus.S1G325100.t2"; gene_id "Ledus.S1G325100"
Ledus.S1	AUGUSTUS	stop_codon	27200003	27200005	.	+	0	transcript_id "Ledus.S1G325100.t2"; gene_id "Ledus.S1G325100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11921.t1 is derived from g5540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7757937	7765059	.	+	.	Ledus.S4G107700
Ledus.S4	AUGUSTUS	transcript	7757937	7765059	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	start_codon	7757937	7757939	.	+	0	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7757937	7758961	0.68	+	0	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7757937	7758961	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7758962	7759561	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7759562	7760045	0.88	+	1	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7759562	7760045	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7760046	7760179	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7760180	7760267	1	+	0	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7760180	7760267	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7760268	7760352	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7760353	7760537	0.97	+	2	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7760353	7760537	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7760538	7760657	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7760658	7760794	1	+	0	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7760658	7760794	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7760795	7760919	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7760920	7760986	1	+	1	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7760920	7760986	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7760987	7761147	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7761148	7761322	1	+	0	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7761148	7761322	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7761323	7761479	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7761480	7761579	1	+	2	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7761480	7761579	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7761580	7761667	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7761668	7761740	1	+	1	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7761668	7761740	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7761741	7761865	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7761866	7762048	0.97	+	0	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7761866	7762048	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7762049	7762223	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7762224	7762384	1	+	0	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7762224	7762384	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7762385	7762556	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7762557	7762671	1	+	1	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7762557	7762671	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7762672	7762769	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7762770	7762854	0.49	+	0	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7762770	7762854	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7762855	7763079	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7763080	7763426	0.99	+	2	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7763080	7763426	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7763427	7763610	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7763611	7763732	1	+	0	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7763611	7763732	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7763733	7763876	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7763877	7764021	1	+	1	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7763877	7764021	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7764022	7764193	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7764194	7764286	1	+	0	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7764194	7764286	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7764287	7764389	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7764390	7764463	1	+	0	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7764390	7764463	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7764464	7764548	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7764549	7764602	1	+	1	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7764549	7764602	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7764603	7764734	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7764735	7765059	1	+	1	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7764735	7765059	.	+	.	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	stop_codon	7765060	7765062	.	+	0	transcript_id "Ledus.S4G107700.t1"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	transcript	7757937	7765059	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	start_codon	7757937	7757939	.	+	0	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7757937	7758942	0.63	+	0	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7757937	7758942	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7758943	7759087	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7759088	7759094	0.89	+	2	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7759088	7759094	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7759095	7759561	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7759562	7760045	0.9	+	1	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7759562	7760045	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7760046	7760179	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7760180	7760267	1	+	0	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7760180	7760267	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7760268	7760352	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7760353	7760537	0.96	+	2	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7760353	7760537	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7760538	7760657	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7760658	7760794	1	+	0	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7760658	7760794	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7760795	7760919	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7760920	7760986	1	+	1	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7760920	7760986	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7760987	7761147	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7761148	7761322	1	+	0	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7761148	7761322	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7761323	7761479	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7761480	7761579	1	+	2	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7761480	7761579	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7761580	7761667	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7761668	7761740	0.99	+	1	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7761668	7761740	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7761741	7761865	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7761866	7762048	0.97	+	0	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7761866	7762048	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7762049	7762223	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7762224	7762384	1	+	0	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7762224	7762384	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7762385	7762556	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7762557	7762671	1	+	1	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7762557	7762671	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7762672	7762769	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7762770	7762854	0.47	+	0	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7762770	7762854	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7762855	7763079	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7763080	7763426	0.99	+	2	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7763080	7763426	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7763427	7763610	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7763611	7763732	1	+	0	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7763611	7763732	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7763733	7763876	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7763877	7764021	1	+	1	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7763877	7764021	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7764022	7764193	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7764194	7764286	1	+	0	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7764194	7764286	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7764287	7764389	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7764390	7764463	1	+	0	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7764390	7764463	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7764464	7764548	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7764549	7764602	1	+	1	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7764549	7764602	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	intron	7764603	7764734	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	CDS	7764735	7765059	1	+	1	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	exon	7764735	7765059	.	+	.	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
Ledus.S4	AUGUSTUS	stop_codon	7765060	7765062	.	+	0	transcript_id "Ledus.S4G107700.t2"; gene_id "Ledus.S4G107700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11389.t1 is derived from g5007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3959679	3960093	.	-	.	Ledus.S4G054500
Ledus.S4	AUGUSTUS	transcript	3959679	3960093	.	-	.	transcript_id "Ledus.S4G054500.t1"; gene_id "Ledus.S4G054500"
Ledus.S4	AUGUSTUS	stop_codon	3959676	3959678	.	-	0	transcript_id "Ledus.S4G054500.t1"; gene_id "Ledus.S4G054500"
Ledus.S4	AUGUSTUS	CDS	3959679	3959698	0.77	-	2	transcript_id "Ledus.S4G054500.t1"; gene_id "Ledus.S4G054500"
Ledus.S4	AUGUSTUS	exon	3959679	3959698	.	-	.	transcript_id "Ledus.S4G054500.t1"; gene_id "Ledus.S4G054500"
Ledus.S4	AUGUSTUS	intron	3959699	3959909	.	-	.	transcript_id "Ledus.S4G054500.t1"; gene_id "Ledus.S4G054500"
Ledus.S4	AUGUSTUS	CDS	3959910	3960093	0.26	-	0	transcript_id "Ledus.S4G054500.t1"; gene_id "Ledus.S4G054500"
Ledus.S4	AUGUSTUS	exon	3959910	3960093	.	-	.	transcript_id "Ledus.S4G054500.t1"; gene_id "Ledus.S4G054500"
Ledus.S4	AUGUSTUS	start_codon	3960091	3960093	.	-	0	transcript_id "Ledus.S4G054500.t1"; gene_id "Ledus.S4G054500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10969.t1 is derived from g4587.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	945280	946824	.	+	.	Ledus.S4G012500
Ledus.S4	AUGUSTUS	transcript	945280	946824	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	start_codon	945280	945282	.	+	0	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	945280	945397	0.94	+	0	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	945280	945397	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	945398	945477	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	945478	945535	1	+	2	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	945478	945535	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	945536	945622	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	945623	945696	1	+	1	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	945623	945696	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	945697	945776	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	945777	945841	1	+	2	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	945777	945841	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	945842	945920	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	945921	945965	1	+	0	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	945921	945965	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	945966	946034	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	946035	946115	1	+	0	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	946035	946115	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	946116	946210	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	946211	946278	1	+	0	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	946211	946278	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	946279	946376	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	946377	946455	1	+	1	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	946377	946455	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	946456	946534	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	946535	946682	0.49	+	0	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	946535	946682	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	946683	946807	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	946808	946824	0.45	+	2	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	946808	946824	.	+	.	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	stop_codon	946825	946827	.	+	0	transcript_id "Ledus.S4G012500.t1"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	transcript	945280	946824	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	start_codon	945280	945282	.	+	0	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	945280	945397	0.99	+	0	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	945280	945397	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	945398	945477	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	945478	945535	1	+	2	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	945478	945535	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	945536	945622	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	945623	945696	1	+	1	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	945623	945696	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	945697	945776	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	945777	945841	1	+	2	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	945777	945841	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	945842	945920	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	945921	945965	1	+	0	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	945921	945965	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	945966	946049	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	946050	946115	0.95	+	0	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	946050	946115	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	946116	946210	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	946211	946278	1	+	0	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	946211	946278	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	946279	946376	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	946377	946455	1	+	1	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	946377	946455	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	946456	946534	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	946535	946682	0.46	+	0	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	946535	946682	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	intron	946683	946807	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	CDS	946808	946824	0.43	+	2	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	exon	946808	946824	.	+	.	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
Ledus.S4	AUGUSTUS	stop_codon	946825	946827	.	+	0	transcript_id "Ledus.S4G012500.t2"; gene_id "Ledus.S4G012500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4538.t1 is derived from g1975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17590159	17590841	.	+	.	Ledus.S1G195900
Ledus.S1	AUGUSTUS	transcript	17590159	17590841	.	+	.	transcript_id "Ledus.S1G195900.t1"; gene_id "Ledus.S1G195900"
Ledus.S1	AUGUSTUS	start_codon	17590159	17590161	.	+	0	transcript_id "Ledus.S1G195900.t1"; gene_id "Ledus.S1G195900"
Ledus.S1	AUGUSTUS	CDS	17590159	17590335	1	+	0	transcript_id "Ledus.S1G195900.t1"; gene_id "Ledus.S1G195900"
Ledus.S1	AUGUSTUS	exon	17590159	17590335	.	+	.	transcript_id "Ledus.S1G195900.t1"; gene_id "Ledus.S1G195900"
Ledus.S1	AUGUSTUS	intron	17590336	17590499	.	+	.	transcript_id "Ledus.S1G195900.t1"; gene_id "Ledus.S1G195900"
Ledus.S1	AUGUSTUS	CDS	17590500	17590841	1	+	0	transcript_id "Ledus.S1G195900.t1"; gene_id "Ledus.S1G195900"
Ledus.S1	AUGUSTUS	exon	17590500	17590841	.	+	.	transcript_id "Ledus.S1G195900.t1"; gene_id "Ledus.S1G195900"
Ledus.S1	AUGUSTUS	stop_codon	17590842	17590844	.	+	0	transcript_id "Ledus.S1G195900.t1"; gene_id "Ledus.S1G195900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7763.t1 is derived from g12434.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6131209	6141115	.	-	.	Ledus.S5G054100
Ledus.S5	AUGUSTUS	transcript	6131209	6141115	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	stop_codon	6131206	6131208	.	-	0	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6131209	6131280	1	-	0	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6131209	6131280	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6131281	6131563	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6131564	6131632	1	-	0	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6131564	6131632	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6131633	6131759	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6131760	6131848	1	-	2	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6131760	6131848	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6131849	6131947	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6131948	6132041	1	-	0	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6131948	6132041	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6132042	6132282	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6132283	6132384	1	-	0	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6132283	6132384	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6132385	6132506	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6132507	6132584	0.95	-	0	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6132507	6132584	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6132585	6132697	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6132698	6133055	0.96	-	1	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6132698	6133055	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6133056	6133135	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6133136	6133330	1	-	1	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6133136	6133330	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6133331	6133501	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6133502	6139293	0.99	-	0	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6133502	6139293	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6139294	6139403	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6139404	6139472	1	-	0	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6139404	6139472	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6139473	6139565	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6139566	6139622	0.66	-	0	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6139566	6139622	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6139623	6139735	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6139736	6139818	0.93	-	2	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6139736	6139818	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6139819	6140183	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6140184	6140246	1	-	2	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6140184	6140246	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6140247	6140369	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6140370	6140578	0.83	-	1	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6140370	6140578	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6140579	6140924	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6140925	6141115	0.55	-	0	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6140925	6141115	.	-	.	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	start_codon	6141113	6141115	.	-	0	transcript_id "Ledus.S5G054100.t1"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	transcript	6131209	6141115	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	stop_codon	6131206	6131208	.	-	0	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6131209	6131280	1	-	0	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6131209	6131280	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6131281	6131563	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6131564	6131632	1	-	0	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6131564	6131632	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6131633	6131759	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6131760	6131848	1	-	2	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6131760	6131848	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6131849	6131947	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6131948	6132041	1	-	0	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6131948	6132041	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6132042	6132282	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6132283	6132384	1	-	0	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6132283	6132384	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6132385	6132506	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6132507	6132584	0.96	-	0	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6132507	6132584	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6132585	6132697	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6132698	6133055	0.9	-	1	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6132698	6133055	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6133056	6133135	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6133136	6133330	1	-	1	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6133136	6133330	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6133331	6133501	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6133502	6139293	0.97	-	0	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6133502	6139293	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6139294	6139403	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6139404	6139472	1	-	0	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6139404	6139472	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6139473	6139565	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6139566	6139622	0.65	-	0	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6139566	6139622	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6139623	6139735	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6139736	6139818	0.91	-	2	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6139736	6139818	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6139819	6140000	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6140001	6140246	0.85	-	2	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6140001	6140246	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6140247	6140369	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6140370	6140578	0.59	-	1	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6140370	6140578	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6140579	6140694	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6140695	6140793	0.67	-	1	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6140695	6140793	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	intron	6140794	6140924	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	CDS	6140925	6141115	0.44	-	0	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	exon	6140925	6141115	.	-	.	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
Ledus.S5	AUGUSTUS	start_codon	6141113	6141115	.	-	0	transcript_id "Ledus.S5G054100.t2"; gene_id "Ledus.S5G054100"
# This transcript jg11432.t2 is derived from g5050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11433.t1 is derived from g5051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4260854	4264585	.	-	.	Ledus.S4G058900
Ledus.S4	AUGUSTUS	transcript	4260854	4264585	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	stop_codon	4260851	4260853	.	-	0	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4260854	4260876	1	-	2	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4260854	4260876	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4260877	4261053	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4261054	4261203	0.79	-	2	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4261054	4261203	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4261204	4261451	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4261452	4261533	0.95	-	0	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4261452	4261533	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4261534	4261750	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4261751	4261900	0.54	-	0	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4261751	4261900	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4261901	4262008	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4262009	4262182	0.85	-	0	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4262009	4262182	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4262183	4262318	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4262319	4262381	1	-	0	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4262319	4262381	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4262382	4262487	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4262488	4262595	1	-	0	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4262488	4262595	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4262596	4262714	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4262715	4262830	1	-	2	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4262715	4262830	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4262831	4262966	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4262967	4263093	1	-	0	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4262967	4263093	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4263094	4263236	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4263237	4263406	1	-	2	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4263237	4263406	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4263407	4263522	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4263523	4263601	0.92	-	0	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4263523	4263601	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4263602	4263681	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4263682	4263793	1	-	1	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4263682	4263793	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4263794	4263913	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4263914	4263955	1	-	1	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4263914	4263955	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4263956	4264046	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4264047	4264177	1	-	0	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4264047	4264177	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	intron	4264178	4264285	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	CDS	4264286	4264585	0.72	-	0	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	exon	4264286	4264585	.	-	.	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
Ledus.S4	AUGUSTUS	start_codon	4264583	4264585	.	-	0	transcript_id "Ledus.S4G058900.t1"; gene_id "Ledus.S4G058900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2183.t1 is derived from g9046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15795849	15796139	.	+	.	Ledus.S2G206500
Ledus.S2	AUGUSTUS	transcript	15795849	15796139	.	+	.	transcript_id "Ledus.S2G206500.t1"; gene_id "Ledus.S2G206500"
Ledus.S2	AUGUSTUS	start_codon	15795849	15795851	.	+	0	transcript_id "Ledus.S2G206500.t1"; gene_id "Ledus.S2G206500"
Ledus.S2	AUGUSTUS	CDS	15795849	15796139	0.66	+	0	transcript_id "Ledus.S2G206500.t1"; gene_id "Ledus.S2G206500"
Ledus.S2	AUGUSTUS	exon	15795849	15796139	.	+	.	transcript_id "Ledus.S2G206500.t1"; gene_id "Ledus.S2G206500"
Ledus.S2	AUGUSTUS	stop_codon	15796140	15796142	.	+	0	transcript_id "Ledus.S2G206500.t1"; gene_id "Ledus.S2G206500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11662.t1 is derived from g5281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5802624	5803844	.	-	.	Ledus.S4G081800
Ledus.S4	AUGUSTUS	transcript	5802624	5803844	.	-	.	transcript_id "Ledus.S4G081800.t1"; gene_id "Ledus.S4G081800"
Ledus.S4	AUGUSTUS	stop_codon	5802621	5802623	.	-	0	transcript_id "Ledus.S4G081800.t1"; gene_id "Ledus.S4G081800"
Ledus.S4	AUGUSTUS	CDS	5802624	5803844	1	-	0	transcript_id "Ledus.S4G081800.t1"; gene_id "Ledus.S4G081800"
Ledus.S4	AUGUSTUS	exon	5802624	5803844	.	-	.	transcript_id "Ledus.S4G081800.t1"; gene_id "Ledus.S4G081800"
Ledus.S4	AUGUSTUS	start_codon	5803842	5803844	.	-	0	transcript_id "Ledus.S4G081800.t1"; gene_id "Ledus.S4G081800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12317.t1 is derived from g5938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11185773	11189625	.	+	.	Ledus.S4G147300
Ledus.S4	AUGUSTUS	transcript	11185773	11189625	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	start_codon	11185773	11185775	.	+	0	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	CDS	11185773	11186070	0.61	+	0	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	exon	11185773	11186070	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	intron	11186071	11186180	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	CDS	11186181	11186551	0.99	+	2	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	exon	11186181	11186551	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	intron	11186552	11186683	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	CDS	11186684	11187214	1	+	0	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	exon	11186684	11187214	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	intron	11187215	11187310	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	CDS	11187311	11187760	0.83	+	0	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	exon	11187311	11187760	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	intron	11187761	11187919	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	CDS	11187920	11187994	0.85	+	0	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	exon	11187920	11187994	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	intron	11187995	11188374	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	CDS	11188375	11188500	0.8	+	0	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	exon	11188375	11188500	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	intron	11188501	11188781	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	CDS	11188782	11188964	1	+	0	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	exon	11188782	11188964	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	intron	11188965	11189224	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	CDS	11189225	11189389	0.87	+	0	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	exon	11189225	11189389	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	intron	11189390	11189490	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	CDS	11189491	11189625	0.75	+	0	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	exon	11189491	11189625	.	+	.	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
Ledus.S4	AUGUSTUS	stop_codon	11189626	11189628	.	+	0	transcript_id "Ledus.S4G147300.t1"; gene_id "Ledus.S4G147300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9311.t1 is derived from g10341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6002337	6002754	.	-	.	Ledus.S3G078800
Ledus.S3	AUGUSTUS	transcript	6002337	6002754	.	-	.	transcript_id "Ledus.S3G078800.t1"; gene_id "Ledus.S3G078800"
Ledus.S3	AUGUSTUS	stop_codon	6002334	6002336	.	-	0	transcript_id "Ledus.S3G078800.t1"; gene_id "Ledus.S3G078800"
Ledus.S3	AUGUSTUS	CDS	6002337	6002473	1	-	2	transcript_id "Ledus.S3G078800.t1"; gene_id "Ledus.S3G078800"
Ledus.S3	AUGUSTUS	exon	6002337	6002473	.	-	.	transcript_id "Ledus.S3G078800.t1"; gene_id "Ledus.S3G078800"
Ledus.S3	AUGUSTUS	intron	6002474	6002651	.	-	.	transcript_id "Ledus.S3G078800.t1"; gene_id "Ledus.S3G078800"
Ledus.S3	AUGUSTUS	CDS	6002652	6002754	1	-	0	transcript_id "Ledus.S3G078800.t1"; gene_id "Ledus.S3G078800"
Ledus.S3	AUGUSTUS	exon	6002652	6002754	.	-	.	transcript_id "Ledus.S3G078800.t1"; gene_id "Ledus.S3G078800"
Ledus.S3	AUGUSTUS	start_codon	6002752	6002754	.	-	0	transcript_id "Ledus.S3G078800.t1"; gene_id "Ledus.S3G078800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5695.t1 is derived from g3134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25947513	25948796	.	-	.	Ledus.S1G311600
Ledus.S1	AUGUSTUS	transcript	25947513	25948796	.	-	.	transcript_id "Ledus.S1G311600.t1"; gene_id "Ledus.S1G311600"
Ledus.S1	AUGUSTUS	stop_codon	25947510	25947512	.	-	0	transcript_id "Ledus.S1G311600.t1"; gene_id "Ledus.S1G311600"
Ledus.S1	AUGUSTUS	CDS	25947513	25948796	0.97	-	0	transcript_id "Ledus.S1G311600.t1"; gene_id "Ledus.S1G311600"
Ledus.S1	AUGUSTUS	exon	25947513	25948796	.	-	.	transcript_id "Ledus.S1G311600.t1"; gene_id "Ledus.S1G311600"
Ledus.S1	AUGUSTUS	start_codon	25948794	25948796	.	-	0	transcript_id "Ledus.S1G311600.t1"; gene_id "Ledus.S1G311600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10559.t1 is derived from g11589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16139399	16141770	.	+	.	Ledus.S3G203600
Ledus.S3	AUGUSTUS	transcript	16139399	16141770	.	+	.	transcript_id "Ledus.S3G203600.t1"; gene_id "Ledus.S3G203600"
Ledus.S3	AUGUSTUS	start_codon	16139399	16139401	.	+	0	transcript_id "Ledus.S3G203600.t1"; gene_id "Ledus.S3G203600"
Ledus.S3	AUGUSTUS	CDS	16139399	16141444	0.65	+	0	transcript_id "Ledus.S3G203600.t1"; gene_id "Ledus.S3G203600"
Ledus.S3	AUGUSTUS	exon	16139399	16141444	.	+	.	transcript_id "Ledus.S3G203600.t1"; gene_id "Ledus.S3G203600"
Ledus.S3	AUGUSTUS	intron	16141445	16141521	.	+	.	transcript_id "Ledus.S3G203600.t1"; gene_id "Ledus.S3G203600"
Ledus.S3	AUGUSTUS	CDS	16141522	16141604	0.67	+	0	transcript_id "Ledus.S3G203600.t1"; gene_id "Ledus.S3G203600"
Ledus.S3	AUGUSTUS	exon	16141522	16141604	.	+	.	transcript_id "Ledus.S3G203600.t1"; gene_id "Ledus.S3G203600"
Ledus.S3	AUGUSTUS	intron	16141605	16141697	.	+	.	transcript_id "Ledus.S3G203600.t1"; gene_id "Ledus.S3G203600"
Ledus.S3	AUGUSTUS	CDS	16141698	16141770	0.69	+	1	transcript_id "Ledus.S3G203600.t1"; gene_id "Ledus.S3G203600"
Ledus.S3	AUGUSTUS	exon	16141698	16141770	.	+	.	transcript_id "Ledus.S3G203600.t1"; gene_id "Ledus.S3G203600"
Ledus.S3	AUGUSTUS	stop_codon	16141771	16141773	.	+	0	transcript_id "Ledus.S3G203600.t1"; gene_id "Ledus.S3G203600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12689.t1 is derived from g6311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13887368	13888117	.	+	.	Ledus.S4G184500
Ledus.S4	AUGUSTUS	transcript	13887368	13888117	.	+	.	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	start_codon	13887368	13887370	.	+	0	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	CDS	13887368	13887403	0.69	+	0	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	exon	13887368	13887403	.	+	.	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	intron	13887404	13887522	.	+	.	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	CDS	13887523	13887669	1	+	0	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	exon	13887523	13887669	.	+	.	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	intron	13887670	13887797	.	+	.	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	CDS	13887798	13887873	1	+	0	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	exon	13887798	13887873	.	+	.	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	intron	13887874	13887962	.	+	.	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	CDS	13887963	13888117	1	+	2	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	exon	13887963	13888117	.	+	.	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
Ledus.S4	AUGUSTUS	stop_codon	13888118	13888120	.	+	0	transcript_id "Ledus.S4G184500.t1"; gene_id "Ledus.S4G184500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6256.t1 is derived from g3699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29917019	29917324	.	+	.	Ledus.S1G367700
Ledus.S1	AUGUSTUS	transcript	29917019	29917324	.	+	.	transcript_id "Ledus.S1G367700.t1"; gene_id "Ledus.S1G367700"
Ledus.S1	AUGUSTUS	start_codon	29917019	29917021	.	+	0	transcript_id "Ledus.S1G367700.t1"; gene_id "Ledus.S1G367700"
Ledus.S1	AUGUSTUS	CDS	29917019	29917324	0.29	+	0	transcript_id "Ledus.S1G367700.t1"; gene_id "Ledus.S1G367700"
Ledus.S1	AUGUSTUS	exon	29917019	29917324	.	+	.	transcript_id "Ledus.S1G367700.t1"; gene_id "Ledus.S1G367700"
Ledus.S1	AUGUSTUS	stop_codon	29917325	29917327	.	+	0	transcript_id "Ledus.S1G367700.t1"; gene_id "Ledus.S1G367700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5993.t1 is derived from g3436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28187341	28187883	.	-	.	Ledus.S1G341400
Ledus.S1	AUGUSTUS	transcript	28187341	28187883	.	-	.	transcript_id "Ledus.S1G341400.t1"; gene_id "Ledus.S1G341400"
Ledus.S1	AUGUSTUS	stop_codon	28187338	28187340	.	-	0	transcript_id "Ledus.S1G341400.t1"; gene_id "Ledus.S1G341400"
Ledus.S1	AUGUSTUS	CDS	28187341	28187361	0.93	-	0	transcript_id "Ledus.S1G341400.t1"; gene_id "Ledus.S1G341400"
Ledus.S1	AUGUSTUS	exon	28187341	28187361	.	-	.	transcript_id "Ledus.S1G341400.t1"; gene_id "Ledus.S1G341400"
Ledus.S1	AUGUSTUS	intron	28187362	28187538	.	-	.	transcript_id "Ledus.S1G341400.t1"; gene_id "Ledus.S1G341400"
Ledus.S1	AUGUSTUS	CDS	28187539	28187883	0.93	-	0	transcript_id "Ledus.S1G341400.t1"; gene_id "Ledus.S1G341400"
Ledus.S1	AUGUSTUS	exon	28187539	28187883	.	-	.	transcript_id "Ledus.S1G341400.t1"; gene_id "Ledus.S1G341400"
Ledus.S1	AUGUSTUS	start_codon	28187881	28187883	.	-	0	transcript_id "Ledus.S1G341400.t1"; gene_id "Ledus.S1G341400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg638.t1 is derived from g7499.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3832145	3832588	.	+	.	Ledus.S2G052000
Ledus.S2	AUGUSTUS	transcript	3832145	3832588	.	+	.	transcript_id "Ledus.S2G052000.t1"; gene_id "Ledus.S2G052000"
Ledus.S2	AUGUSTUS	start_codon	3832145	3832147	.	+	0	transcript_id "Ledus.S2G052000.t1"; gene_id "Ledus.S2G052000"
Ledus.S2	AUGUSTUS	CDS	3832145	3832588	0.56	+	0	transcript_id "Ledus.S2G052000.t1"; gene_id "Ledus.S2G052000"
Ledus.S2	AUGUSTUS	exon	3832145	3832588	.	+	.	transcript_id "Ledus.S2G052000.t1"; gene_id "Ledus.S2G052000"
Ledus.S2	AUGUSTUS	stop_codon	3832589	3832591	.	+	0	transcript_id "Ledus.S2G052000.t1"; gene_id "Ledus.S2G052000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1520.t1 is derived from g8381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10751638	10752225	.	+	.	Ledus.S2G140200
Ledus.S2	AUGUSTUS	transcript	10751638	10752225	.	+	.	transcript_id "Ledus.S2G140200.t1"; gene_id "Ledus.S2G140200"
Ledus.S2	AUGUSTUS	start_codon	10751638	10751640	.	+	0	transcript_id "Ledus.S2G140200.t1"; gene_id "Ledus.S2G140200"
Ledus.S2	AUGUSTUS	CDS	10751638	10752225	0.72	+	0	transcript_id "Ledus.S2G140200.t1"; gene_id "Ledus.S2G140200"
Ledus.S2	AUGUSTUS	exon	10751638	10752225	.	+	.	transcript_id "Ledus.S2G140200.t1"; gene_id "Ledus.S2G140200"
Ledus.S2	AUGUSTUS	stop_codon	10752226	10752228	.	+	0	transcript_id "Ledus.S2G140200.t1"; gene_id "Ledus.S2G140200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12718.t1 is derived from g6340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14057510	14060002	.	+	.	Ledus.S4G187400
Ledus.S4	AUGUSTUS	transcript	14057510	14060002	.	+	.	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	start_codon	14057510	14057512	.	+	0	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	CDS	14057510	14057829	0.86	+	0	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	exon	14057510	14057829	.	+	.	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	intron	14057830	14057912	.	+	.	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	CDS	14057913	14059117	0.98	+	1	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	exon	14057913	14059117	.	+	.	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	intron	14059118	14059220	.	+	.	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	CDS	14059221	14059562	1	+	2	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	exon	14059221	14059562	.	+	.	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	intron	14059563	14059658	.	+	.	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	CDS	14059659	14059806	0.8	+	2	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	exon	14059659	14059806	.	+	.	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	intron	14059807	14059896	.	+	.	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	CDS	14059897	14059902	0.79	+	1	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	exon	14059897	14059902	.	+	.	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	intron	14059903	14059989	.	+	.	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	CDS	14059990	14060002	0.78	+	1	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	exon	14059990	14060002	.	+	.	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
Ledus.S4	AUGUSTUS	stop_codon	14060003	14060005	.	+	0	transcript_id "Ledus.S4G187400.t1"; gene_id "Ledus.S4G187400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1780.t1 is derived from g8643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12501585	12501935	.	+	.	Ledus.S2G166200
Ledus.S2	AUGUSTUS	transcript	12501585	12501935	.	+	.	transcript_id "Ledus.S2G166200.t1"; gene_id "Ledus.S2G166200"
Ledus.S2	AUGUSTUS	start_codon	12501585	12501587	.	+	0	transcript_id "Ledus.S2G166200.t1"; gene_id "Ledus.S2G166200"
Ledus.S2	AUGUSTUS	CDS	12501585	12501935	0.59	+	0	transcript_id "Ledus.S2G166200.t1"; gene_id "Ledus.S2G166200"
Ledus.S2	AUGUSTUS	exon	12501585	12501935	.	+	.	transcript_id "Ledus.S2G166200.t1"; gene_id "Ledus.S2G166200"
Ledus.S2	AUGUSTUS	stop_codon	12501936	12501938	.	+	0	transcript_id "Ledus.S2G166200.t1"; gene_id "Ledus.S2G166200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11670.t1 is derived from g5289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5859973	5861529	.	+	.	Ledus.S4G082600
Ledus.S4	AUGUSTUS	transcript	5859973	5861529	.	+	.	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	start_codon	5859973	5859975	.	+	0	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	CDS	5859973	5860002	0.56	+	0	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	exon	5859973	5860002	.	+	.	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	intron	5860003	5860082	.	+	.	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	CDS	5860083	5860661	0.98	+	0	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	exon	5860083	5860661	.	+	.	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	intron	5860662	5860780	.	+	.	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	CDS	5860781	5860970	0.99	+	0	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	exon	5860781	5860970	.	+	.	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	intron	5860971	5861062	.	+	.	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	CDS	5861063	5861328	1	+	2	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	exon	5861063	5861328	.	+	.	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	intron	5861329	5861409	.	+	.	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	CDS	5861410	5861529	1	+	0	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	exon	5861410	5861529	.	+	.	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
Ledus.S4	AUGUSTUS	stop_codon	5861530	5861532	.	+	0	transcript_id "Ledus.S4G082600.t1"; gene_id "Ledus.S4G082600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8071.t1 is derived from g12742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9043064	9043636	.	+	.	Ledus.S5G084900
Ledus.S5	AUGUSTUS	transcript	9043064	9043636	.	+	.	transcript_id "Ledus.S5G084900.t1"; gene_id "Ledus.S5G084900"
Ledus.S5	AUGUSTUS	start_codon	9043064	9043066	.	+	0	transcript_id "Ledus.S5G084900.t1"; gene_id "Ledus.S5G084900"
Ledus.S5	AUGUSTUS	CDS	9043064	9043636	0.86	+	0	transcript_id "Ledus.S5G084900.t1"; gene_id "Ledus.S5G084900"
Ledus.S5	AUGUSTUS	exon	9043064	9043636	.	+	.	transcript_id "Ledus.S5G084900.t1"; gene_id "Ledus.S5G084900"
Ledus.S5	AUGUSTUS	stop_codon	9043637	9043639	.	+	0	transcript_id "Ledus.S5G084900.t1"; gene_id "Ledus.S5G084900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9793.t1 is derived from g10823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9852328	9854003	.	-	.	Ledus.S3G127000
Ledus.S3	AUGUSTUS	transcript	9852328	9854003	.	-	.	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	stop_codon	9852325	9852327	.	-	0	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	CDS	9852328	9852477	0.38	-	0	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	exon	9852328	9852477	.	-	.	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	intron	9852478	9852642	.	-	.	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	CDS	9852643	9852770	0.67	-	2	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	exon	9852643	9852770	.	-	.	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	intron	9852771	9852856	.	-	.	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	CDS	9852857	9853270	0.9	-	2	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	exon	9852857	9853270	.	-	.	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	intron	9853271	9853379	.	-	.	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	CDS	9853380	9853607	1	-	2	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	exon	9853380	9853607	.	-	.	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	intron	9853608	9853837	.	-	.	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	CDS	9853838	9854003	0.56	-	0	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	exon	9853838	9854003	.	-	.	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
Ledus.S3	AUGUSTUS	start_codon	9854001	9854003	.	-	0	transcript_id "Ledus.S3G127000.t1"; gene_id "Ledus.S3G127000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12641.t1 is derived from g6263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13578325	13579539	.	-	.	Ledus.S4G179700
Ledus.S4	AUGUSTUS	transcript	13578325	13579539	.	-	.	transcript_id "Ledus.S4G179700.t1"; gene_id "Ledus.S4G179700"
Ledus.S4	AUGUSTUS	stop_codon	13578322	13578324	.	-	0	transcript_id "Ledus.S4G179700.t1"; gene_id "Ledus.S4G179700"
Ledus.S4	AUGUSTUS	CDS	13578325	13578356	0.61	-	2	transcript_id "Ledus.S4G179700.t1"; gene_id "Ledus.S4G179700"
Ledus.S4	AUGUSTUS	exon	13578325	13578356	.	-	.	transcript_id "Ledus.S4G179700.t1"; gene_id "Ledus.S4G179700"
Ledus.S4	AUGUSTUS	intron	13578357	13578677	.	-	.	transcript_id "Ledus.S4G179700.t1"; gene_id "Ledus.S4G179700"
Ledus.S4	AUGUSTUS	CDS	13578678	13579539	0.45	-	0	transcript_id "Ledus.S4G179700.t1"; gene_id "Ledus.S4G179700"
Ledus.S4	AUGUSTUS	exon	13578678	13579539	.	-	.	transcript_id "Ledus.S4G179700.t1"; gene_id "Ledus.S4G179700"
Ledus.S4	AUGUSTUS	start_codon	13579537	13579539	.	-	0	transcript_id "Ledus.S4G179700.t1"; gene_id "Ledus.S4G179700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3456.t1 is derived from g891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8472724	8475501	.	-	.	Ledus.S1G087700
Ledus.S1	AUGUSTUS	transcript	8472724	8475501	.	-	.	transcript_id "Ledus.S1G087700.t1"; gene_id "Ledus.S1G087700"
Ledus.S1	AUGUSTUS	stop_codon	8472721	8472723	.	-	0	transcript_id "Ledus.S1G087700.t1"; gene_id "Ledus.S1G087700"
Ledus.S1	AUGUSTUS	CDS	8472724	8475501	0.85	-	0	transcript_id "Ledus.S1G087700.t1"; gene_id "Ledus.S1G087700"
Ledus.S1	AUGUSTUS	exon	8472724	8475501	.	-	.	transcript_id "Ledus.S1G087700.t1"; gene_id "Ledus.S1G087700"
Ledus.S1	AUGUSTUS	start_codon	8475499	8475501	.	-	0	transcript_id "Ledus.S1G087700.t1"; gene_id "Ledus.S1G087700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8476.t1 is derived from g13148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12116811	12118224	.	-	.	Ledus.S5G125400
Ledus.S5	AUGUSTUS	transcript	12116811	12118224	.	-	.	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	stop_codon	12116808	12116810	.	-	0	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	CDS	12116811	12116941	0.97	-	2	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	exon	12116811	12116941	.	-	.	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	intron	12116942	12117045	.	-	.	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	CDS	12117046	12117274	0.98	-	0	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	exon	12117046	12117274	.	-	.	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	intron	12117275	12117433	.	-	.	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	CDS	12117434	12117631	1	-	0	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	exon	12117434	12117631	.	-	.	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	intron	12117632	12117745	.	-	.	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	CDS	12117746	12118008	1	-	2	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	exon	12117746	12118008	.	-	.	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	intron	12118009	12118106	.	-	.	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	CDS	12118107	12118224	0.98	-	0	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	exon	12118107	12118224	.	-	.	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
Ledus.S5	AUGUSTUS	start_codon	12118222	12118224	.	-	0	transcript_id "Ledus.S5G125400.t1"; gene_id "Ledus.S5G125400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9583.t1 is derived from g10613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7983025	7983802	.	+	.	Ledus.S3G106000
Ledus.S3	AUGUSTUS	transcript	7983025	7983802	.	+	.	transcript_id "Ledus.S3G106000.t1"; gene_id "Ledus.S3G106000"
Ledus.S3	AUGUSTUS	start_codon	7983025	7983027	.	+	0	transcript_id "Ledus.S3G106000.t1"; gene_id "Ledus.S3G106000"
Ledus.S3	AUGUSTUS	CDS	7983025	7983249	0.93	+	0	transcript_id "Ledus.S3G106000.t1"; gene_id "Ledus.S3G106000"
Ledus.S3	AUGUSTUS	exon	7983025	7983249	.	+	.	transcript_id "Ledus.S3G106000.t1"; gene_id "Ledus.S3G106000"
Ledus.S3	AUGUSTUS	intron	7983250	7983448	.	+	.	transcript_id "Ledus.S3G106000.t1"; gene_id "Ledus.S3G106000"
Ledus.S3	AUGUSTUS	CDS	7983449	7983802	0.98	+	0	transcript_id "Ledus.S3G106000.t1"; gene_id "Ledus.S3G106000"
Ledus.S3	AUGUSTUS	exon	7983449	7983802	.	+	.	transcript_id "Ledus.S3G106000.t1"; gene_id "Ledus.S3G106000"
Ledus.S3	AUGUSTUS	stop_codon	7983803	7983805	.	+	0	transcript_id "Ledus.S3G106000.t1"; gene_id "Ledus.S3G106000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2026.t1 is derived from g8889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14244098	14251018	.	+	.	Ledus.S2G190800
Ledus.S2	AUGUSTUS	transcript	14244098	14251018	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	start_codon	14244098	14244100	.	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14244098	14244185	0.81	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14244098	14244185	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14244186	14244269	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14244270	14244304	0.58	+	2	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14244270	14244304	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14244305	14244700	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14244701	14244761	0.94	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14244701	14244761	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14244762	14244863	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14244864	14245192	0.94	+	2	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14244864	14245192	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14245193	14245266	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14245267	14245424	0.96	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14245267	14245424	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14245425	14245516	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14245517	14246748	0.98	+	1	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14245517	14246748	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14246749	14246837	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14246838	14246950	1	+	2	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14246838	14246950	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14246951	14247039	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14247040	14247108	1	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14247040	14247108	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14247109	14247188	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14247189	14247308	1	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14247189	14247308	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14247309	14247403	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14247404	14247499	1	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14247404	14247499	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14247500	14247596	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14247597	14247869	1	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14247597	14247869	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14247870	14247960	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14247961	14248231	0.92	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14247961	14248231	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14248232	14248346	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14248347	14248438	0.99	+	2	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14248347	14248438	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14248439	14248532	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14248533	14248661	1	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14248533	14248661	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14248662	14248744	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14248745	14248850	1	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14248745	14248850	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14248851	14248945	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14248946	14249118	1	+	2	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14248946	14249118	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14249119	14249207	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14249208	14249343	0.99	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14249208	14249343	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14249344	14249634	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14249635	14249806	0.99	+	2	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14249635	14249806	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14249807	14249912	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14249913	14250030	1	+	1	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14249913	14250030	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14250031	14250190	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14250191	14250587	1	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14250191	14250587	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	intron	14250588	14250773	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	CDS	14250774	14251018	1	+	2	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	exon	14250774	14251018	.	+	.	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
Ledus.S2	AUGUSTUS	stop_codon	14251019	14251021	.	+	0	transcript_id "Ledus.S2G190800.t1"; gene_id "Ledus.S2G190800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1275.t1 is derived from g8136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9022410	9024381	.	+	.	Ledus.S2G115700
Ledus.S2	AUGUSTUS	transcript	9022410	9024381	.	+	.	transcript_id "Ledus.S2G115700.t1"; gene_id "Ledus.S2G115700"
Ledus.S2	AUGUSTUS	start_codon	9022410	9022412	.	+	0	transcript_id "Ledus.S2G115700.t1"; gene_id "Ledus.S2G115700"
Ledus.S2	AUGUSTUS	CDS	9022410	9022751	0.92	+	0	transcript_id "Ledus.S2G115700.t1"; gene_id "Ledus.S2G115700"
Ledus.S2	AUGUSTUS	exon	9022410	9022751	.	+	.	transcript_id "Ledus.S2G115700.t1"; gene_id "Ledus.S2G115700"
Ledus.S2	AUGUSTUS	intron	9022752	9022832	.	+	.	transcript_id "Ledus.S2G115700.t1"; gene_id "Ledus.S2G115700"
Ledus.S2	AUGUSTUS	CDS	9022833	9023740	0.99	+	0	transcript_id "Ledus.S2G115700.t1"; gene_id "Ledus.S2G115700"
Ledus.S2	AUGUSTUS	exon	9022833	9023740	.	+	.	transcript_id "Ledus.S2G115700.t1"; gene_id "Ledus.S2G115700"
Ledus.S2	AUGUSTUS	intron	9023741	9023849	.	+	.	transcript_id "Ledus.S2G115700.t1"; gene_id "Ledus.S2G115700"
Ledus.S2	AUGUSTUS	CDS	9023850	9024381	0.97	+	1	transcript_id "Ledus.S2G115700.t1"; gene_id "Ledus.S2G115700"
Ledus.S2	AUGUSTUS	exon	9023850	9024381	.	+	.	transcript_id "Ledus.S2G115700.t1"; gene_id "Ledus.S2G115700"
Ledus.S2	AUGUSTUS	stop_codon	9024382	9024384	.	+	0	transcript_id "Ledus.S2G115700.t1"; gene_id "Ledus.S2G115700"
# This transcript jg10862.t2 is derived from g4480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10862.t3 is derived from g4480.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10863.t1 is derived from g4481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	155785	157278	.	-	.	Ledus.S4G001900
Ledus.S4	AUGUSTUS	transcript	155785	157278	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	stop_codon	155782	155784	.	-	0	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	CDS	155785	155869	0.99	-	1	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	exon	155785	155869	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	intron	155870	155963	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	CDS	155964	156016	0.94	-	0	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	exon	155964	156016	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	intron	156017	156119	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	CDS	156120	156200	0.95	-	0	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	exon	156120	156200	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	intron	156201	156381	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	CDS	156382	156463	1	-	1	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	exon	156382	156463	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	intron	156464	156619	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	CDS	156620	156723	1	-	0	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	exon	156620	156723	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	intron	156724	156803	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	CDS	156804	156863	1	-	0	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	exon	156804	156863	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	intron	156864	156950	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	CDS	156951	156976	0.84	-	2	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	exon	156951	156976	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	intron	156977	157241	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	CDS	157242	157278	0.26	-	0	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	exon	157242	157278	.	-	.	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
Ledus.S4	AUGUSTUS	start_codon	157276	157278	.	-	0	transcript_id "Ledus.S4G001900.t1"; gene_id "Ledus.S4G001900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg862.t1 is derived from g7723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5768519	5769900	.	-	.	Ledus.S2G074400
Ledus.S2	AUGUSTUS	transcript	5768519	5769900	.	-	.	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	stop_codon	5768516	5768518	.	-	0	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	CDS	5768519	5768669	1	-	1	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	exon	5768519	5768669	.	-	.	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	intron	5768670	5768751	.	-	.	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	CDS	5768752	5769194	1	-	0	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	exon	5768752	5769194	.	-	.	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	intron	5769195	5769271	.	-	.	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	CDS	5769272	5769458	1	-	1	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	exon	5769272	5769458	.	-	.	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	intron	5769459	5769541	.	-	.	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	CDS	5769542	5769900	0.99	-	0	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	exon	5769542	5769900	.	-	.	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
Ledus.S2	AUGUSTUS	start_codon	5769898	5769900	.	-	0	transcript_id "Ledus.S2G074400.t1"; gene_id "Ledus.S2G074400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4282.t1 is derived from g1718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16041161	16041808	.	+	.	Ledus.S1G170300
Ledus.S1	AUGUSTUS	transcript	16041161	16041808	.	+	.	transcript_id "Ledus.S1G170300.t1"; gene_id "Ledus.S1G170300"
Ledus.S1	AUGUSTUS	start_codon	16041161	16041163	.	+	0	transcript_id "Ledus.S1G170300.t1"; gene_id "Ledus.S1G170300"
Ledus.S1	AUGUSTUS	CDS	16041161	16041808	0.87	+	0	transcript_id "Ledus.S1G170300.t1"; gene_id "Ledus.S1G170300"
Ledus.S1	AUGUSTUS	exon	16041161	16041808	.	+	.	transcript_id "Ledus.S1G170300.t1"; gene_id "Ledus.S1G170300"
Ledus.S1	AUGUSTUS	stop_codon	16041809	16041811	.	+	0	transcript_id "Ledus.S1G170300.t1"; gene_id "Ledus.S1G170300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2637.t1 is derived from g70.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1037831	1038127	.	+	.	Ledus.S1G005800
Ledus.S1	AUGUSTUS	transcript	1037831	1038127	.	+	.	transcript_id "Ledus.S1G005800.t1"; gene_id "Ledus.S1G005800"
Ledus.S1	AUGUSTUS	start_codon	1037831	1037833	.	+	0	transcript_id "Ledus.S1G005800.t1"; gene_id "Ledus.S1G005800"
Ledus.S1	AUGUSTUS	CDS	1037831	1038127	1	+	0	transcript_id "Ledus.S1G005800.t1"; gene_id "Ledus.S1G005800"
Ledus.S1	AUGUSTUS	exon	1037831	1038127	.	+	.	transcript_id "Ledus.S1G005800.t1"; gene_id "Ledus.S1G005800"
Ledus.S1	AUGUSTUS	stop_codon	1038128	1038130	.	+	0	transcript_id "Ledus.S1G005800.t1"; gene_id "Ledus.S1G005800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10304.t1 is derived from g11334.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14158635	14159982	.	-	.	Ledus.S3G178100
Ledus.S3	AUGUSTUS	transcript	14158635	14159982	.	-	.	transcript_id "Ledus.S3G178100.t1"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	stop_codon	14158632	14158634	.	-	0	transcript_id "Ledus.S3G178100.t1"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	CDS	14158635	14159402	1	-	0	transcript_id "Ledus.S3G178100.t1"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	exon	14158635	14159402	.	-	.	transcript_id "Ledus.S3G178100.t1"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	intron	14159403	14159469	.	-	.	transcript_id "Ledus.S3G178100.t1"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	CDS	14159470	14159721	0.96	-	0	transcript_id "Ledus.S3G178100.t1"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	exon	14159470	14159721	.	-	.	transcript_id "Ledus.S3G178100.t1"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	intron	14159722	14159820	.	-	.	transcript_id "Ledus.S3G178100.t1"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	CDS	14159821	14159982	0.95	-	0	transcript_id "Ledus.S3G178100.t1"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	exon	14159821	14159982	.	-	.	transcript_id "Ledus.S3G178100.t1"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	start_codon	14159980	14159982	.	-	0	transcript_id "Ledus.S3G178100.t1"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	transcript	14158635	14159063	.	-	.	transcript_id "Ledus.S3G178100.t2"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	stop_codon	14158632	14158634	.	-	0	transcript_id "Ledus.S3G178100.t2"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	CDS	14158635	14159063	1	-	0	transcript_id "Ledus.S3G178100.t2"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	exon	14158635	14159063	.	-	.	transcript_id "Ledus.S3G178100.t2"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	start_codon	14159061	14159063	.	-	0	transcript_id "Ledus.S3G178100.t2"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	transcript	14158635	14158973	.	-	.	transcript_id "Ledus.S3G178100.t3"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	stop_codon	14158632	14158634	.	-	0	transcript_id "Ledus.S3G178100.t3"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	CDS	14158635	14158973	0.86	-	0	transcript_id "Ledus.S3G178100.t3"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	exon	14158635	14158973	.	-	.	transcript_id "Ledus.S3G178100.t3"; gene_id "Ledus.S3G178100"
Ledus.S3	AUGUSTUS	start_codon	14158971	14158973	.	-	0	transcript_id "Ledus.S3G178100.t3"; gene_id "Ledus.S3G178100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5525.t1 is derived from g2964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24942587	24944326	.	+	.	Ledus.S1G294600
Ledus.S1	AUGUSTUS	transcript	24942587	24944326	.	+	.	transcript_id "Ledus.S1G294600.t1"; gene_id "Ledus.S1G294600"
Ledus.S1	AUGUSTUS	start_codon	24942587	24942589	.	+	0	transcript_id "Ledus.S1G294600.t1"; gene_id "Ledus.S1G294600"
Ledus.S1	AUGUSTUS	CDS	24942587	24944326	0.96	+	0	transcript_id "Ledus.S1G294600.t1"; gene_id "Ledus.S1G294600"
Ledus.S1	AUGUSTUS	exon	24942587	24944326	.	+	.	transcript_id "Ledus.S1G294600.t1"; gene_id "Ledus.S1G294600"
Ledus.S1	AUGUSTUS	stop_codon	24944327	24944329	.	+	0	transcript_id "Ledus.S1G294600.t1"; gene_id "Ledus.S1G294600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2277.t1 is derived from g9140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16890396	16896994	.	+	.	Ledus.S2G215900
Ledus.S2	AUGUSTUS	transcript	16890396	16896994	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	start_codon	16890396	16890398	.	+	0	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16890396	16890764	0.48	+	0	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16890396	16890764	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16890765	16890873	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16890874	16890928	1	+	0	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16890874	16890928	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16890929	16891057	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16891058	16891233	1	+	2	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16891058	16891233	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16891234	16891401	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16891402	16891602	1	+	0	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16891402	16891602	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16891603	16891733	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16891734	16891993	1	+	0	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16891734	16891993	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16891994	16892140	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16892141	16892451	0.99	+	1	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16892141	16892451	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16892452	16892582	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16892583	16892806	1	+	2	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16892583	16892806	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16892807	16892951	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16892952	16893292	1	+	0	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16892952	16893292	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16893293	16893383	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16893384	16894153	0.94	+	1	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16893384	16894153	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16894154	16894356	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16894357	16894598	0.99	+	2	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16894357	16894598	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16894599	16894722	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16894723	16895884	0.88	+	0	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16894723	16895884	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16895885	16896316	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16896317	16896390	0.94	+	2	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16896317	16896390	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16896391	16896607	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16896608	16896716	0.99	+	0	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16896608	16896716	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16896717	16896788	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16896789	16896842	1	+	2	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16896789	16896842	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	intron	16896843	16896923	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	CDS	16896924	16896994	0.92	+	2	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	exon	16896924	16896994	.	+	.	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
Ledus.S2	AUGUSTUS	stop_codon	16896995	16896997	.	+	0	transcript_id "Ledus.S2G215900.t1"; gene_id "Ledus.S2G215900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9748.t1 is derived from g10778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9565990	9567053	.	-	.	Ledus.S3G122500
Ledus.S3	AUGUSTUS	transcript	9565990	9567053	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	stop_codon	9565987	9565989	.	-	0	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9565990	9565997	1	-	2	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9565990	9565997	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9565998	9566084	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9566085	9566099	1	-	2	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9566085	9566099	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9566100	9566187	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9566188	9566270	1	-	1	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9566188	9566270	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9566271	9566350	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9566351	9566438	1	-	2	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9566351	9566438	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9566439	9566541	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9566542	9566581	1	-	0	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9566542	9566581	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9566582	9566710	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9566711	9566762	0.99	-	1	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9566711	9566762	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9566763	9566826	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9566827	9566833	0.99	-	2	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9566827	9566833	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9566834	9567034	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9567035	9567053	0.68	-	0	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9567035	9567053	.	-	.	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	start_codon	9567051	9567053	.	-	0	transcript_id "Ledus.S3G122500.t1"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	transcript	9565990	9567053	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	stop_codon	9565987	9565989	.	-	0	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9565990	9565997	1	-	2	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9565990	9565997	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9565998	9566084	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9566085	9566099	1	-	2	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9566085	9566099	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9566100	9566187	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9566188	9566273	1	-	1	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9566188	9566273	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9566274	9566350	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9566351	9566438	1	-	2	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9566351	9566438	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9566439	9566541	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9566542	9566581	1	-	0	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9566542	9566581	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9566582	9566710	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9566711	9566762	1	-	1	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9566711	9566762	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9566763	9566826	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9566827	9566833	1	-	2	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9566827	9566833	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	intron	9566834	9567034	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	CDS	9567035	9567053	0.62	-	0	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	exon	9567035	9567053	.	-	.	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
Ledus.S3	AUGUSTUS	start_codon	9567051	9567053	.	-	0	transcript_id "Ledus.S3G122500.t2"; gene_id "Ledus.S3G122500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1273.t1 is derived from g8134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9010781	9018712	.	-	.	Ledus.S2G115500
Ledus.S2	AUGUSTUS	transcript	9010781	9018712	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	stop_codon	9010778	9010780	.	-	0	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9010781	9011456	0.84	-	1	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9010781	9011456	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9011457	9011572	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9011573	9011710	0.98	-	1	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9011573	9011710	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9011711	9011841	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9011842	9011902	0.94	-	2	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9011842	9011902	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9011903	9012013	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9012014	9013831	0.73	-	2	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9012014	9013831	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9013832	9013936	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9013937	9014215	0.99	-	2	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9013937	9014215	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9014216	9014307	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9014308	9014371	1	-	0	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9014308	9014371	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9014372	9014525	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9014526	9014867	0.99	-	0	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9014526	9014867	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9014868	9014972	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9014973	9015100	0.99	-	2	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9014973	9015100	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9015101	9015200	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9015201	9015366	0.96	-	0	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9015201	9015366	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9015367	9015470	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9015471	9015520	0.95	-	2	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9015471	9015520	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9015521	9015626	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9015627	9015697	0.98	-	1	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9015627	9015697	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9015698	9015838	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9015839	9015899	0.86	-	2	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9015839	9015899	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9015900	9016011	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9016012	9016142	0.74	-	1	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9016012	9016142	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9016143	9016315	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9016316	9016509	1	-	0	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9016316	9016509	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9016510	9016720	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9016721	9016834	0.99	-	0	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9016721	9016834	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9016835	9016955	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9016956	9017077	0.96	-	2	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9016956	9017077	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9017078	9017274	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9017275	9017329	1	-	0	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9017275	9017329	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9017330	9017441	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9017442	9017533	0.99	-	2	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9017442	9017533	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9017534	9017714	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9017715	9017829	1	-	0	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9017715	9017829	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9017830	9017921	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9017922	9018004	1	-	2	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9017922	9018004	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9018005	9018149	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9018150	9018293	1	-	2	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9018150	9018293	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9018294	9018361	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9018362	9018611	0.95	-	0	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9018362	9018611	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9018612	9018685	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9018686	9018712	1	-	0	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9018686	9018712	.	-	.	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	start_codon	9018710	9018712	.	-	0	transcript_id "Ledus.S2G115500.t1"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	transcript	9010781	9016645	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	stop_codon	9010778	9010780	.	-	0	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9010781	9011456	0.74	-	1	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9010781	9011456	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9011457	9011572	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9011573	9011710	0.99	-	1	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9011573	9011710	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9011711	9011841	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9011842	9011902	0.94	-	2	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9011842	9011902	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9011903	9012013	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9012014	9013831	0.81	-	2	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9012014	9013831	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9013832	9013936	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9013937	9014215	0.96	-	2	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9013937	9014215	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9014216	9014307	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9014308	9014371	1	-	0	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9014308	9014371	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9014372	9014525	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9014526	9014867	1	-	0	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9014526	9014867	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9014868	9014972	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9014973	9015100	0.98	-	2	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9014973	9015100	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9015101	9015200	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9015201	9015366	0.93	-	0	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9015201	9015366	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9015367	9015470	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9015471	9015520	0.92	-	2	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9015471	9015520	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9015521	9015626	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9015627	9015697	0.97	-	1	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9015627	9015697	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9015698	9015838	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9015839	9015899	0.93	-	2	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9015839	9015899	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9015900	9016011	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9016012	9016142	0.71	-	1	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9016012	9016142	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9016143	9016315	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9016316	9016509	1	-	0	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9016316	9016509	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	intron	9016510	9016609	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	CDS	9016610	9016645	0.8	-	0	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	exon	9016610	9016645	.	-	.	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
Ledus.S2	AUGUSTUS	start_codon	9016643	9016645	.	-	0	transcript_id "Ledus.S2G115500.t2"; gene_id "Ledus.S2G115500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg5546.t1 is derived from g2985.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25065071	25068071	.	+	.	Ledus.S1G296700
Ledus.S1	AUGUSTUS	transcript	25065071	25068071	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	start_codon	25065071	25065073	.	+	0	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25065071	25065228	1	+	0	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25065071	25065228	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25065229	25065443	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25065444	25065524	1	+	1	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25065444	25065524	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25065525	25066728	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25066729	25066893	1	+	1	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25066729	25066893	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25066894	25066984	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25066985	25067037	1	+	1	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25066985	25067037	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25067038	25067133	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25067134	25067191	1	+	2	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25067134	25067191	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25067192	25067307	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25067308	25067493	0.94	+	1	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25067308	25067493	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25067494	25067685	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25067686	25067859	1	+	1	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25067686	25067859	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25067860	25068022	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25068023	25068071	0.97	+	1	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25068023	25068071	.	+	.	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	stop_codon	25068072	25068074	.	+	0	transcript_id "Ledus.S1G296700.t1"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	transcript	25065071	25068071	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	start_codon	25065071	25065073	.	+	0	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25065071	25065228	0.99	+	0	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25065071	25065228	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25065229	25065446	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25065447	25065524	1	+	1	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25065447	25065524	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25065525	25066728	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25066729	25066893	1	+	1	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25066729	25066893	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25066894	25066984	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25066985	25067037	1	+	1	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25066985	25067037	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25067038	25067133	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25067134	25067191	1	+	2	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25067134	25067191	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25067192	25067376	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25067377	25067493	0.61	+	1	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25067377	25067493	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25067494	25067685	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25067686	25067859	1	+	1	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25067686	25067859	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25067860	25068022	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25068023	25068071	0.99	+	1	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25068023	25068071	.	+	.	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	stop_codon	25068072	25068074	.	+	0	transcript_id "Ledus.S1G296700.t2"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	transcript	25065071	25068071	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	start_codon	25065071	25065073	.	+	0	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25065071	25065228	0.97	+	0	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25065071	25065228	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25065229	25065443	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25065444	25065524	1	+	1	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25065444	25065524	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25065525	25066728	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25066729	25066893	1	+	1	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25066729	25066893	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25066894	25066984	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25066985	25067037	1	+	1	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25066985	25067037	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25067038	25067133	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25067134	25067191	1	+	2	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25067134	25067191	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25067192	25067376	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25067377	25067493	0.59	+	1	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25067377	25067493	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25067494	25067685	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25067686	25067859	1	+	1	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25067686	25067859	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	intron	25067860	25068022	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	CDS	25068023	25068071	0.97	+	1	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	exon	25068023	25068071	.	+	.	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
Ledus.S1	AUGUSTUS	stop_codon	25068072	25068074	.	+	0	transcript_id "Ledus.S1G296700.t3"; gene_id "Ledus.S1G296700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7498.t1 is derived from g12169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3458270	3458996	.	+	.	Ledus.S5G027600
Ledus.S5	AUGUSTUS	transcript	3458270	3458996	.	+	.	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	start_codon	3458270	3458272	.	+	0	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	CDS	3458270	3458558	0.69	+	0	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	exon	3458270	3458558	.	+	.	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	intron	3458559	3458642	.	+	.	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	CDS	3458643	3458689	1	+	2	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	exon	3458643	3458689	.	+	.	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	intron	3458690	3458764	.	+	.	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	CDS	3458765	3458818	1	+	0	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	exon	3458765	3458818	.	+	.	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	intron	3458819	3458924	.	+	.	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	CDS	3458925	3458996	0.99	+	0	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	exon	3458925	3458996	.	+	.	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
Ledus.S5	AUGUSTUS	stop_codon	3458997	3458999	.	+	0	transcript_id "Ledus.S5G027600.t1"; gene_id "Ledus.S5G027600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7374.t1 is derived from g12045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1717751	1718017	.	-	.	Ledus.S5G015200
Ledus.S5	AUGUSTUS	transcript	1717751	1718017	.	-	.	transcript_id "Ledus.S5G015200.t1"; gene_id "Ledus.S5G015200"
Ledus.S5	AUGUSTUS	stop_codon	1717748	1717750	.	-	0	transcript_id "Ledus.S5G015200.t1"; gene_id "Ledus.S5G015200"
Ledus.S5	AUGUSTUS	CDS	1717751	1718017	0.91	-	0	transcript_id "Ledus.S5G015200.t1"; gene_id "Ledus.S5G015200"
Ledus.S5	AUGUSTUS	exon	1717751	1718017	.	-	.	transcript_id "Ledus.S5G015200.t1"; gene_id "Ledus.S5G015200"
Ledus.S5	AUGUSTUS	start_codon	1718015	1718017	.	-	0	transcript_id "Ledus.S5G015200.t1"; gene_id "Ledus.S5G015200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg369.t1 is derived from g7230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1992501	1994630	.	-	.	Ledus.S2G025100
Ledus.S2	AUGUSTUS	transcript	1992501	1994630	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	stop_codon	1992498	1992500	.	-	0	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	CDS	1992501	1992848	0.93	-	0	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	exon	1992501	1992848	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	intron	1992849	1992949	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	CDS	1992950	1993018	0.73	-	0	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	exon	1992950	1993018	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	intron	1993019	1993127	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	CDS	1993128	1993199	0.98	-	0	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	exon	1993128	1993199	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	intron	1993200	1993280	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	CDS	1993281	1993380	1	-	1	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	exon	1993281	1993380	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	intron	1993381	1993574	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	CDS	1993575	1993651	1	-	0	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	exon	1993575	1993651	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	intron	1993652	1993770	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	CDS	1993771	1993870	1	-	1	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	exon	1993771	1993870	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	intron	1993871	1993976	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	CDS	1993977	1994080	1	-	0	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	exon	1993977	1994080	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	intron	1994081	1994168	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	CDS	1994169	1994229	1	-	1	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	exon	1994169	1994229	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	intron	1994230	1994340	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	CDS	1994341	1994630	0.74	-	0	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	exon	1994341	1994630	.	-	.	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
Ledus.S2	AUGUSTUS	start_codon	1994628	1994630	.	-	0	transcript_id "Ledus.S2G025100.t1"; gene_id "Ledus.S2G025100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1.t1 is derived from g9553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C54	AUGUSTUS	gene	9508	9738	.	-	.	Ledus.C54G000100
Ledus.C54	AUGUSTUS	transcript	9508	9738	.	-	.	transcript_id "Ledus.C54G000100.t1"; gene_id "Ledus.C54G000100"
Ledus.C54	AUGUSTUS	stop_codon	9505	9507	.	-	0	transcript_id "Ledus.C54G000100.t1"; gene_id "Ledus.C54G000100"
Ledus.C54	AUGUSTUS	CDS	9508	9738	0.47	-	0	transcript_id "Ledus.C54G000100.t1"; gene_id "Ledus.C54G000100"
Ledus.C54	AUGUSTUS	exon	9508	9738	.	-	.	transcript_id "Ledus.C54G000100.t1"; gene_id "Ledus.C54G000100"
Ledus.C54	AUGUSTUS	start_codon	9736	9738	.	-	0	transcript_id "Ledus.C54G000100.t1"; gene_id "Ledus.C54G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8172.t1 is derived from g12843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9669181	9669853	.	-	.	Ledus.S5G095000
Ledus.S5	AUGUSTUS	transcript	9669181	9669853	.	-	.	transcript_id "Ledus.S5G095000.t1"; gene_id "Ledus.S5G095000"
Ledus.S5	AUGUSTUS	stop_codon	9669178	9669180	.	-	0	transcript_id "Ledus.S5G095000.t1"; gene_id "Ledus.S5G095000"
Ledus.S5	AUGUSTUS	CDS	9669181	9669344	0.44	-	2	transcript_id "Ledus.S5G095000.t1"; gene_id "Ledus.S5G095000"
Ledus.S5	AUGUSTUS	exon	9669181	9669344	.	-	.	transcript_id "Ledus.S5G095000.t1"; gene_id "Ledus.S5G095000"
Ledus.S5	AUGUSTUS	intron	9669345	9669471	.	-	.	transcript_id "Ledus.S5G095000.t1"; gene_id "Ledus.S5G095000"
Ledus.S5	AUGUSTUS	CDS	9669472	9669496	0.31	-	0	transcript_id "Ledus.S5G095000.t1"; gene_id "Ledus.S5G095000"
Ledus.S5	AUGUSTUS	exon	9669472	9669496	.	-	.	transcript_id "Ledus.S5G095000.t1"; gene_id "Ledus.S5G095000"
Ledus.S5	AUGUSTUS	intron	9669497	9669688	.	-	.	transcript_id "Ledus.S5G095000.t1"; gene_id "Ledus.S5G095000"
Ledus.S5	AUGUSTUS	CDS	9669689	9669853	0.52	-	0	transcript_id "Ledus.S5G095000.t1"; gene_id "Ledus.S5G095000"
Ledus.S5	AUGUSTUS	exon	9669689	9669853	.	-	.	transcript_id "Ledus.S5G095000.t1"; gene_id "Ledus.S5G095000"
Ledus.S5	AUGUSTUS	start_codon	9669851	9669853	.	-	0	transcript_id "Ledus.S5G095000.t1"; gene_id "Ledus.S5G095000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12685.t1 is derived from g6307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13875357	13877421	.	+	.	Ledus.S4G184100
Ledus.S4	AUGUSTUS	transcript	13875357	13877421	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	start_codon	13875357	13875359	.	+	0	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	CDS	13875357	13875467	1	+	0	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	exon	13875357	13875467	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	intron	13875468	13875609	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	CDS	13875610	13875657	1	+	0	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	exon	13875610	13875657	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	intron	13875658	13875738	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	CDS	13875739	13875828	1	+	0	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	exon	13875739	13875828	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	intron	13875829	13875953	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	CDS	13875954	13875999	1	+	0	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	exon	13875954	13875999	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	intron	13876000	13876106	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	CDS	13876107	13876189	0.98	+	2	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	exon	13876107	13876189	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	intron	13876190	13876297	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	CDS	13876298	13876398	0.98	+	0	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	exon	13876298	13876398	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	intron	13876399	13876532	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	CDS	13876533	13876599	1	+	1	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	exon	13876533	13876599	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	intron	13876600	13876704	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	CDS	13876705	13876802	0.97	+	0	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	exon	13876705	13876802	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	intron	13876803	13876883	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	CDS	13876884	13877101	0.98	+	1	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	exon	13876884	13877101	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	intron	13877102	13877389	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	CDS	13877390	13877421	1	+	2	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	exon	13877390	13877421	.	+	.	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
Ledus.S4	AUGUSTUS	stop_codon	13877422	13877424	.	+	0	transcript_id "Ledus.S4G184100.t1"; gene_id "Ledus.S4G184100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4574.t1 is derived from g2011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17823061	17829235	.	-	.	Ledus.S1G199500
Ledus.S1	AUGUSTUS	transcript	17823061	17829235	.	-	.	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	stop_codon	17823058	17823060	.	-	0	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	CDS	17823061	17823167	0.95	-	2	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	exon	17823061	17823167	.	-	.	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	intron	17823168	17823265	.	-	.	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	CDS	17823266	17823334	0.96	-	2	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	exon	17823266	17823334	.	-	.	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	intron	17823335	17823428	.	-	.	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	CDS	17823429	17823484	0.81	-	1	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	exon	17823429	17823484	.	-	.	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	intron	17823485	17823569	.	-	.	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	CDS	17823570	17828698	0.43	-	0	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	exon	17823570	17828698	.	-	.	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	intron	17828699	17828825	.	-	.	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	CDS	17828826	17829004	0.59	-	2	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	exon	17828826	17829004	.	-	.	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	intron	17829005	17829081	.	-	.	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	CDS	17829082	17829235	0.19	-	0	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	exon	17829082	17829235	.	-	.	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
Ledus.S1	AUGUSTUS	start_codon	17829233	17829235	.	-	0	transcript_id "Ledus.S1G199500.t1"; gene_id "Ledus.S1G199500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12696.t1 is derived from g6318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13948353	13958338	.	+	.	Ledus.S4G185200
Ledus.S4	AUGUSTUS	transcript	13948353	13958338	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	start_codon	13948353	13948355	.	+	0	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13948353	13948518	0.5	+	0	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13948353	13948518	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13948519	13948593	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13948594	13948738	1	+	2	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13948594	13948738	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13948739	13949245	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13949246	13949358	1	+	1	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13949246	13949358	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13949359	13949438	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13949439	13949791	1	+	2	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13949439	13949791	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13949792	13949887	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13949888	13950012	1	+	0	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13949888	13950012	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13950013	13950140	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13950141	13950285	1	+	1	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13950141	13950285	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13950286	13950365	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13950366	13951034	1	+	0	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13950366	13951034	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13951035	13951177	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13951178	13951250	1	+	0	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13951178	13951250	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13951251	13951355	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13951356	13951668	0.98	+	2	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13951356	13951668	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13951669	13951755	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13951756	13952976	0.99	+	1	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13951756	13952976	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13952977	13953057	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13953058	13956337	1	+	1	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13953058	13956337	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13956338	13956528	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13956529	13957071	0.99	+	0	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13956529	13957071	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13957072	13957178	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13957179	13957802	1	+	0	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13957179	13957802	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13957803	13957895	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13957896	13958090	1	+	0	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13957896	13958090	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	intron	13958091	13958173	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	CDS	13958174	13958338	1	+	0	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	exon	13958174	13958338	.	+	.	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
Ledus.S4	AUGUSTUS	stop_codon	13958339	13958341	.	+	0	transcript_id "Ledus.S4G185200.t1"; gene_id "Ledus.S4G185200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg430.t1 is derived from g7291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2416007	2416258	.	-	.	Ledus.S2G031200
Ledus.S2	AUGUSTUS	transcript	2416007	2416258	.	-	.	transcript_id "Ledus.S2G031200.t1"; gene_id "Ledus.S2G031200"
Ledus.S2	AUGUSTUS	stop_codon	2416004	2416006	.	-	0	transcript_id "Ledus.S2G031200.t1"; gene_id "Ledus.S2G031200"
Ledus.S2	AUGUSTUS	CDS	2416007	2416258	0.89	-	0	transcript_id "Ledus.S2G031200.t1"; gene_id "Ledus.S2G031200"
Ledus.S2	AUGUSTUS	exon	2416007	2416258	.	-	.	transcript_id "Ledus.S2G031200.t1"; gene_id "Ledus.S2G031200"
Ledus.S2	AUGUSTUS	start_codon	2416256	2416258	.	-	0	transcript_id "Ledus.S2G031200.t1"; gene_id "Ledus.S2G031200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12727.t1 is derived from g6349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14110790	14111793	.	+	.	Ledus.S4G188300
Ledus.S4	AUGUSTUS	transcript	14110790	14111793	.	+	.	transcript_id "Ledus.S4G188300.t1"; gene_id "Ledus.S4G188300"
Ledus.S4	AUGUSTUS	start_codon	14110790	14110792	.	+	0	transcript_id "Ledus.S4G188300.t1"; gene_id "Ledus.S4G188300"
Ledus.S4	AUGUSTUS	CDS	14110790	14111291	1	+	0	transcript_id "Ledus.S4G188300.t1"; gene_id "Ledus.S4G188300"
Ledus.S4	AUGUSTUS	exon	14110790	14111291	.	+	.	transcript_id "Ledus.S4G188300.t1"; gene_id "Ledus.S4G188300"
Ledus.S4	AUGUSTUS	intron	14111292	14111368	.	+	.	transcript_id "Ledus.S4G188300.t1"; gene_id "Ledus.S4G188300"
Ledus.S4	AUGUSTUS	CDS	14111369	14111793	0.96	+	2	transcript_id "Ledus.S4G188300.t1"; gene_id "Ledus.S4G188300"
Ledus.S4	AUGUSTUS	exon	14111369	14111793	.	+	.	transcript_id "Ledus.S4G188300.t1"; gene_id "Ledus.S4G188300"
Ledus.S4	AUGUSTUS	stop_codon	14111794	14111796	.	+	0	transcript_id "Ledus.S4G188300.t1"; gene_id "Ledus.S4G188300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8220.t1 is derived from g12891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9998800	10000351	.	+	.	Ledus.S5G099800
Ledus.S5	AUGUSTUS	transcript	9998800	10000351	.	+	.	transcript_id "Ledus.S5G099800.t1"; gene_id "Ledus.S5G099800"
Ledus.S5	AUGUSTUS	start_codon	9998800	9998802	.	+	0	transcript_id "Ledus.S5G099800.t1"; gene_id "Ledus.S5G099800"
Ledus.S5	AUGUSTUS	CDS	9998800	9999334	0.91	+	0	transcript_id "Ledus.S5G099800.t1"; gene_id "Ledus.S5G099800"
Ledus.S5	AUGUSTUS	exon	9998800	9999334	.	+	.	transcript_id "Ledus.S5G099800.t1"; gene_id "Ledus.S5G099800"
Ledus.S5	AUGUSTUS	intron	9999335	9999417	.	+	.	transcript_id "Ledus.S5G099800.t1"; gene_id "Ledus.S5G099800"
Ledus.S5	AUGUSTUS	CDS	9999418	9999632	1	+	2	transcript_id "Ledus.S5G099800.t1"; gene_id "Ledus.S5G099800"
Ledus.S5	AUGUSTUS	exon	9999418	9999632	.	+	.	transcript_id "Ledus.S5G099800.t1"; gene_id "Ledus.S5G099800"
Ledus.S5	AUGUSTUS	intron	9999633	9999742	.	+	.	transcript_id "Ledus.S5G099800.t1"; gene_id "Ledus.S5G099800"
Ledus.S5	AUGUSTUS	CDS	9999743	10000351	0.99	+	0	transcript_id "Ledus.S5G099800.t1"; gene_id "Ledus.S5G099800"
Ledus.S5	AUGUSTUS	exon	9999743	10000351	.	+	.	transcript_id "Ledus.S5G099800.t1"; gene_id "Ledus.S5G099800"
Ledus.S5	AUGUSTUS	stop_codon	10000352	10000354	.	+	0	transcript_id "Ledus.S5G099800.t1"; gene_id "Ledus.S5G099800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3166.t1 is derived from g601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6473381	6475011	.	+	.	Ledus.S1G058700
Ledus.S1	AUGUSTUS	transcript	6473381	6475011	.	+	.	transcript_id "Ledus.S1G058700.t1"; gene_id "Ledus.S1G058700"
Ledus.S1	AUGUSTUS	start_codon	6473381	6473383	.	+	0	transcript_id "Ledus.S1G058700.t1"; gene_id "Ledus.S1G058700"
Ledus.S1	AUGUSTUS	CDS	6473381	6473522	0.63	+	0	transcript_id "Ledus.S1G058700.t1"; gene_id "Ledus.S1G058700"
Ledus.S1	AUGUSTUS	exon	6473381	6473522	.	+	.	transcript_id "Ledus.S1G058700.t1"; gene_id "Ledus.S1G058700"
Ledus.S1	AUGUSTUS	intron	6473523	6473693	.	+	.	transcript_id "Ledus.S1G058700.t1"; gene_id "Ledus.S1G058700"
Ledus.S1	AUGUSTUS	CDS	6473694	6473852	0.89	+	2	transcript_id "Ledus.S1G058700.t1"; gene_id "Ledus.S1G058700"
Ledus.S1	AUGUSTUS	exon	6473694	6473852	.	+	.	transcript_id "Ledus.S1G058700.t1"; gene_id "Ledus.S1G058700"
Ledus.S1	AUGUSTUS	intron	6473853	6474262	.	+	.	transcript_id "Ledus.S1G058700.t1"; gene_id "Ledus.S1G058700"
Ledus.S1	AUGUSTUS	CDS	6474263	6475011	0.73	+	2	transcript_id "Ledus.S1G058700.t1"; gene_id "Ledus.S1G058700"
Ledus.S1	AUGUSTUS	exon	6474263	6475011	.	+	.	transcript_id "Ledus.S1G058700.t1"; gene_id "Ledus.S1G058700"
Ledus.S1	AUGUSTUS	stop_codon	6475012	6475014	.	+	0	transcript_id "Ledus.S1G058700.t1"; gene_id "Ledus.S1G058700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7201.t1 is derived from g6732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2092081	2096334	.	+	.	Ledus.C7G026200
Ledus.C7	AUGUSTUS	transcript	2092081	2096334	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	start_codon	2092081	2092083	.	+	0	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	CDS	2092081	2092468	0.94	+	0	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	exon	2092081	2092468	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	intron	2092469	2092566	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	CDS	2092567	2092778	1	+	2	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	exon	2092567	2092778	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	intron	2092779	2092864	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	CDS	2092865	2092996	1	+	0	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	exon	2092865	2092996	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	intron	2092997	2093067	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	CDS	2093068	2093211	1	+	0	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	exon	2093068	2093211	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	intron	2093212	2093291	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	CDS	2093292	2093404	1	+	0	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	exon	2093292	2093404	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	intron	2093405	2093647	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	CDS	2093648	2094056	1	+	1	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	exon	2093648	2094056	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	intron	2094057	2094228	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	CDS	2094229	2094561	0.99	+	0	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	exon	2094229	2094561	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	intron	2094562	2094694	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	CDS	2094695	2094922	0.77	+	0	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	exon	2094695	2094922	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	intron	2094923	2095025	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	CDS	2095026	2095268	0.76	+	0	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	exon	2095026	2095268	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	intron	2095269	2095377	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	CDS	2095378	2095863	0.99	+	0	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	exon	2095378	2095863	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	intron	2095864	2095953	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	CDS	2095954	2096052	1	+	0	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	exon	2095954	2096052	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	intron	2096053	2096142	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	CDS	2096143	2096334	0.94	+	0	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	exon	2096143	2096334	.	+	.	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
Ledus.C7	AUGUSTUS	stop_codon	2096335	2096337	.	+	0	transcript_id "Ledus.C7G026200.t1"; gene_id "Ledus.C7G026200"
# This transcript jg4737.t2 is derived from g2175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4738.t1 is derived from g2176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19431647	19435727	.	+	.	Ledus.S1G215900
Ledus.S1	AUGUSTUS	transcript	19431647	19435727	.	+	.	transcript_id "Ledus.S1G215900.t1"; gene_id "Ledus.S1G215900"
Ledus.S1	AUGUSTUS	start_codon	19431647	19431649	.	+	0	transcript_id "Ledus.S1G215900.t1"; gene_id "Ledus.S1G215900"
Ledus.S1	AUGUSTUS	CDS	19431647	19434851	0.55	+	0	transcript_id "Ledus.S1G215900.t1"; gene_id "Ledus.S1G215900"
Ledus.S1	AUGUSTUS	exon	19431647	19434851	.	+	.	transcript_id "Ledus.S1G215900.t1"; gene_id "Ledus.S1G215900"
Ledus.S1	AUGUSTUS	intron	19434852	19434966	.	+	.	transcript_id "Ledus.S1G215900.t1"; gene_id "Ledus.S1G215900"
Ledus.S1	AUGUSTUS	CDS	19434967	19435041	0.56	+	2	transcript_id "Ledus.S1G215900.t1"; gene_id "Ledus.S1G215900"
Ledus.S1	AUGUSTUS	exon	19434967	19435041	.	+	.	transcript_id "Ledus.S1G215900.t1"; gene_id "Ledus.S1G215900"
Ledus.S1	AUGUSTUS	intron	19435042	19435197	.	+	.	transcript_id "Ledus.S1G215900.t1"; gene_id "Ledus.S1G215900"
Ledus.S1	AUGUSTUS	CDS	19435198	19435727	0.54	+	2	transcript_id "Ledus.S1G215900.t1"; gene_id "Ledus.S1G215900"
Ledus.S1	AUGUSTUS	exon	19435198	19435727	.	+	.	transcript_id "Ledus.S1G215900.t1"; gene_id "Ledus.S1G215900"
Ledus.S1	AUGUSTUS	stop_codon	19435728	19435730	.	+	0	transcript_id "Ledus.S1G215900.t1"; gene_id "Ledus.S1G215900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1863.t1 is derived from g8726.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13000310	13002090	.	+	.	Ledus.S2G174500
Ledus.S2	AUGUSTUS	transcript	13000310	13002090	.	+	.	transcript_id "Ledus.S2G174500.t1"; gene_id "Ledus.S2G174500"
Ledus.S2	AUGUSTUS	start_codon	13000310	13000312	.	+	0	transcript_id "Ledus.S2G174500.t1"; gene_id "Ledus.S2G174500"
Ledus.S2	AUGUSTUS	CDS	13000310	13000665	0.63	+	0	transcript_id "Ledus.S2G174500.t1"; gene_id "Ledus.S2G174500"
Ledus.S2	AUGUSTUS	exon	13000310	13000665	.	+	.	transcript_id "Ledus.S2G174500.t1"; gene_id "Ledus.S2G174500"
Ledus.S2	AUGUSTUS	intron	13000666	13000757	.	+	.	transcript_id "Ledus.S2G174500.t1"; gene_id "Ledus.S2G174500"
Ledus.S2	AUGUSTUS	CDS	13000758	13002090	1	+	1	transcript_id "Ledus.S2G174500.t1"; gene_id "Ledus.S2G174500"
Ledus.S2	AUGUSTUS	exon	13000758	13002090	.	+	.	transcript_id "Ledus.S2G174500.t1"; gene_id "Ledus.S2G174500"
Ledus.S2	AUGUSTUS	stop_codon	13002091	13002093	.	+	0	transcript_id "Ledus.S2G174500.t1"; gene_id "Ledus.S2G174500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12461.t1 is derived from g6082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12101400	12104673	.	+	.	Ledus.S4G161700
Ledus.S4	AUGUSTUS	transcript	12101400	12104673	.	+	.	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	start_codon	12101400	12101402	.	+	0	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	CDS	12101400	12101523	0.76	+	0	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	exon	12101400	12101523	.	+	.	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	intron	12101524	12101586	.	+	.	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	CDS	12101587	12103713	0.95	+	2	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	exon	12101587	12103713	.	+	.	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	intron	12103714	12103873	.	+	.	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	CDS	12103874	12104035	0.55	+	2	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	exon	12103874	12104035	.	+	.	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	intron	12104036	12104185	.	+	.	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	CDS	12104186	12104673	0.99	+	2	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	exon	12104186	12104673	.	+	.	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	stop_codon	12104674	12104676	.	+	0	transcript_id "Ledus.S4G161700.t1"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	transcript	12101400	12104673	.	+	.	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	start_codon	12101400	12101402	.	+	0	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	CDS	12101400	12101519	0.63	+	0	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	exon	12101400	12101519	.	+	.	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	intron	12101520	12101586	.	+	.	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	CDS	12101587	12101655	0.87	+	0	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	exon	12101587	12101655	.	+	.	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	intron	12101656	12101756	.	+	.	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	CDS	12101757	12103713	0.82	+	0	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	exon	12101757	12103713	.	+	.	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	intron	12103714	12103873	.	+	.	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	CDS	12103874	12104035	0.58	+	2	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	exon	12103874	12104035	.	+	.	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	intron	12104036	12104185	.	+	.	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	CDS	12104186	12104673	1	+	2	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	exon	12104186	12104673	.	+	.	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
Ledus.S4	AUGUSTUS	stop_codon	12104674	12104676	.	+	0	transcript_id "Ledus.S4G161700.t2"; gene_id "Ledus.S4G161700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9721.t1 is derived from g10751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9408652	9415599	.	+	.	Ledus.S3G119800
Ledus.S3	AUGUSTUS	transcript	9408652	9415599	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	start_codon	9408652	9408654	.	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9408652	9408849	0.99	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9408652	9408849	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9408850	9408999	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9409000	9409031	1	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9409000	9409031	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9409032	9409149	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9409150	9409244	1	+	1	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9409150	9409244	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9409245	9409421	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9409422	9409505	1	+	2	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9409422	9409505	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9409506	9409622	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9409623	9409686	1	+	2	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9409623	9409686	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9409687	9409777	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9409778	9409841	0.94	+	1	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9409778	9409841	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9409842	9410028	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9410029	9410111	0.54	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9410029	9410111	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9410112	9410401	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9410402	9410503	1	+	1	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9410402	9410503	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9410504	9410670	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9410671	9410698	1	+	1	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9410671	9410698	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9410699	9410796	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9410797	9410828	1	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9410797	9410828	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9410829	9410958	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9410959	9411016	1	+	1	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9410959	9411016	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9411017	9411128	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9411129	9411215	1	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9411129	9411215	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9411216	9411369	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9411370	9411426	1	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9411370	9411426	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9411427	9411528	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9411529	9411630	0.99	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9411529	9411630	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9411631	9411799	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9411800	9411844	0.74	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9411800	9411844	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9411845	9411956	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9411957	9412034	1	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9411957	9412034	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9412035	9412270	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9412271	9412321	1	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9412271	9412321	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9412322	9412443	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9412444	9412525	1	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9412444	9412525	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9412526	9412603	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9412604	9412677	1	+	2	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9412604	9412677	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9412678	9412769	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9412770	9412869	1	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9412770	9412869	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9412870	9412961	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9412962	9413058	1	+	2	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9412962	9413058	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9413059	9413218	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9413219	9413308	1	+	1	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9413219	9413308	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9413309	9413431	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9413432	9413505	1	+	1	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9413432	9413505	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9413506	9413587	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9413588	9413646	1	+	2	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9413588	9413646	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9413647	9413765	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9413766	9413842	1	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9413766	9413842	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9413843	9413930	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9413931	9414020	1	+	1	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9413931	9414020	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9414021	9414153	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9414154	9414215	1	+	1	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9414154	9414215	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9414216	9414302	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9414303	9414364	1	+	2	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9414303	9414364	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9414365	9414449	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9414450	9414503	1	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9414450	9414503	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9414504	9414646	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9414647	9414735	1	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9414647	9414735	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9414736	9414824	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9414825	9414856	0.97	+	1	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9414825	9414856	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9414857	9415128	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9415129	9415244	0.95	+	2	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9415129	9415244	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9415245	9415351	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9415352	9415431	1	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9415352	9415431	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	intron	9415432	9415589	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	CDS	9415590	9415599	1	+	1	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	exon	9415590	9415599	.	+	.	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
Ledus.S3	AUGUSTUS	stop_codon	9415600	9415602	.	+	0	transcript_id "Ledus.S3G119800.t1"; gene_id "Ledus.S3G119800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10078.t1 is derived from g11108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12547803	12549448	.	+	.	Ledus.S3G155500
Ledus.S3	AUGUSTUS	transcript	12547803	12549448	.	+	.	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	start_codon	12547803	12547805	.	+	0	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	CDS	12547803	12547944	0.99	+	0	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	exon	12547803	12547944	.	+	.	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	intron	12547945	12548027	.	+	.	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	CDS	12548028	12548133	1	+	2	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	exon	12548028	12548133	.	+	.	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	intron	12548134	12548244	.	+	.	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	CDS	12548245	12548553	1	+	1	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	exon	12548245	12548553	.	+	.	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	intron	12548554	12548666	.	+	.	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	CDS	12548667	12549139	1	+	1	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	exon	12548667	12549139	.	+	.	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	intron	12549140	12549227	.	+	.	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	CDS	12549228	12549448	1	+	2	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	exon	12549228	12549448	.	+	.	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
Ledus.S3	AUGUSTUS	stop_codon	12549449	12549451	.	+	0	transcript_id "Ledus.S3G155500.t1"; gene_id "Ledus.S3G155500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7919.t1 is derived from g12590.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7838752	7841490	.	+	.	Ledus.S5G069700
Ledus.S5	AUGUSTUS	transcript	7838752	7841490	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	start_codon	7838752	7838754	.	+	0	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	CDS	7838752	7839218	0.6	+	0	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	exon	7838752	7839218	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	intron	7839219	7839340	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	CDS	7839341	7839661	0.56	+	1	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	exon	7839341	7839661	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	intron	7839662	7839783	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	CDS	7839784	7840006	0.98	+	1	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	exon	7839784	7840006	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	intron	7840007	7840180	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	CDS	7840181	7840360	1	+	0	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	exon	7840181	7840360	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	intron	7840361	7840467	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	CDS	7840468	7840674	0.95	+	0	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	exon	7840468	7840674	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	intron	7840675	7840759	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	CDS	7840760	7840837	1	+	0	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	exon	7840760	7840837	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	intron	7840838	7840943	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	CDS	7840944	7841014	1	+	0	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	exon	7840944	7841014	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	intron	7841015	7841103	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	CDS	7841104	7841214	1	+	1	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	exon	7841104	7841214	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	intron	7841215	7841309	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	CDS	7841310	7841490	1	+	1	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	exon	7841310	7841490	.	+	.	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
Ledus.S5	AUGUSTUS	stop_codon	7841491	7841493	.	+	0	transcript_id "Ledus.S5G069700.t1"; gene_id "Ledus.S5G069700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1986.t1 is derived from g8849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14060744	14065347	.	+	.	Ledus.S2G186800
Ledus.S2	AUGUSTUS	transcript	14060744	14065347	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	start_codon	14060744	14060746	.	+	0	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	CDS	14060744	14061016	0.97	+	0	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	exon	14060744	14061016	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	intron	14061017	14061176	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	CDS	14061177	14061908	0.89	+	0	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	exon	14061177	14061908	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	intron	14061909	14062021	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	CDS	14062022	14062801	1	+	0	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	exon	14062022	14062801	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	intron	14062802	14062901	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	CDS	14062902	14063113	1	+	0	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	exon	14062902	14063113	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	intron	14063114	14063231	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	CDS	14063232	14063600	1	+	1	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	exon	14063232	14063600	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	intron	14063601	14063714	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	CDS	14063715	14063872	0.99	+	1	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	exon	14063715	14063872	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	intron	14063873	14064012	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	CDS	14064013	14064176	1	+	2	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	exon	14064013	14064176	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	intron	14064177	14064347	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	CDS	14064348	14064494	0.99	+	0	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	exon	14064348	14064494	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	intron	14064495	14064606	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	CDS	14064607	14065347	0.99	+	0	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	exon	14064607	14065347	.	+	.	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
Ledus.S2	AUGUSTUS	stop_codon	14065348	14065350	.	+	0	transcript_id "Ledus.S2G186800.t1"; gene_id "Ledus.S2G186800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9221.t1 is derived from g10251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5471737	5473064	.	+	.	Ledus.S3G069800
Ledus.S3	AUGUSTUS	transcript	5471737	5473064	.	+	.	transcript_id "Ledus.S3G069800.t1"; gene_id "Ledus.S3G069800"
Ledus.S3	AUGUSTUS	start_codon	5471737	5471739	.	+	0	transcript_id "Ledus.S3G069800.t1"; gene_id "Ledus.S3G069800"
Ledus.S3	AUGUSTUS	CDS	5471737	5471842	1	+	0	transcript_id "Ledus.S3G069800.t1"; gene_id "Ledus.S3G069800"
Ledus.S3	AUGUSTUS	exon	5471737	5471842	.	+	.	transcript_id "Ledus.S3G069800.t1"; gene_id "Ledus.S3G069800"
Ledus.S3	AUGUSTUS	intron	5471843	5471932	.	+	.	transcript_id "Ledus.S3G069800.t1"; gene_id "Ledus.S3G069800"
Ledus.S3	AUGUSTUS	CDS	5471933	5472813	1	+	2	transcript_id "Ledus.S3G069800.t1"; gene_id "Ledus.S3G069800"
Ledus.S3	AUGUSTUS	exon	5471933	5472813	.	+	.	transcript_id "Ledus.S3G069800.t1"; gene_id "Ledus.S3G069800"
Ledus.S3	AUGUSTUS	intron	5472814	5472992	.	+	.	transcript_id "Ledus.S3G069800.t1"; gene_id "Ledus.S3G069800"
Ledus.S3	AUGUSTUS	CDS	5472993	5473064	1	+	0	transcript_id "Ledus.S3G069800.t1"; gene_id "Ledus.S3G069800"
Ledus.S3	AUGUSTUS	exon	5472993	5473064	.	+	.	transcript_id "Ledus.S3G069800.t1"; gene_id "Ledus.S3G069800"
Ledus.S3	AUGUSTUS	stop_codon	5473065	5473067	.	+	0	transcript_id "Ledus.S3G069800.t1"; gene_id "Ledus.S3G069800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2617.t1 is derived from g50.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	512119	514754	.	-	.	Ledus.S1G003800
Ledus.S1	AUGUSTUS	transcript	512119	514754	.	-	.	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	stop_codon	512116	512118	.	-	0	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	CDS	512119	512141	0.94	-	2	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	exon	512119	512141	.	-	.	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	intron	512142	512227	.	-	.	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	CDS	512228	512264	0.92	-	0	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	exon	512228	512264	.	-	.	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	intron	512265	512624	.	-	.	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	CDS	512625	514492	0.95	-	2	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	exon	512625	514492	.	-	.	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	intron	514493	514579	.	-	.	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	CDS	514580	514754	0.86	-	0	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	exon	514580	514754	.	-	.	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	start_codon	514752	514754	.	-	0	transcript_id "Ledus.S1G003800.t1"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	transcript	512119	514754	.	-	.	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	stop_codon	512116	512118	.	-	0	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	CDS	512119	512138	0.86	-	2	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	exon	512119	512138	.	-	.	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	intron	512139	512227	.	-	.	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	CDS	512228	512264	0.85	-	0	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	exon	512228	512264	.	-	.	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	intron	512265	512624	.	-	.	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	CDS	512625	514492	0.99	-	2	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	exon	512625	514492	.	-	.	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	intron	514493	514579	.	-	.	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	CDS	514580	514754	0.85	-	0	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	exon	514580	514754	.	-	.	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
Ledus.S1	AUGUSTUS	start_codon	514752	514754	.	-	0	transcript_id "Ledus.S1G003800.t2"; gene_id "Ledus.S1G003800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg888.t1 is derived from g7749.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5968655	5971174	.	+	.	Ledus.S2G077000
Ledus.S2	AUGUSTUS	transcript	5968655	5971174	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	start_codon	5968655	5968657	.	+	0	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	CDS	5968655	5969101	0.74	+	0	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	exon	5968655	5969101	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	intron	5969102	5969273	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	CDS	5969274	5969348	0.97	+	0	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	exon	5969274	5969348	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	intron	5969349	5969416	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	CDS	5969417	5969518	1	+	0	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	exon	5969417	5969518	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	intron	5969519	5969766	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	CDS	5969767	5969961	1	+	0	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	exon	5969767	5969961	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	intron	5969962	5970134	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	CDS	5970135	5970259	1	+	0	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	exon	5970135	5970259	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	intron	5970260	5970380	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	CDS	5970381	5970500	1	+	1	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	exon	5970381	5970500	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	intron	5970501	5970612	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	CDS	5970613	5970742	0.54	+	1	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	exon	5970613	5970742	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	intron	5970743	5970927	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	CDS	5970928	5970986	0.95	+	0	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	exon	5970928	5970986	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	intron	5970987	5971053	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	CDS	5971054	5971174	0.95	+	1	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	exon	5971054	5971174	.	+	.	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
Ledus.S2	AUGUSTUS	stop_codon	5971175	5971177	.	+	0	transcript_id "Ledus.S2G077000.t1"; gene_id "Ledus.S2G077000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4813.t1 is derived from g2251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19929508	19929894	.	-	.	Ledus.S1G223400
Ledus.S1	AUGUSTUS	transcript	19929508	19929894	.	-	.	transcript_id "Ledus.S1G223400.t1"; gene_id "Ledus.S1G223400"
Ledus.S1	AUGUSTUS	stop_codon	19929505	19929507	.	-	0	transcript_id "Ledus.S1G223400.t1"; gene_id "Ledus.S1G223400"
Ledus.S1	AUGUSTUS	CDS	19929508	19929617	0.63	-	2	transcript_id "Ledus.S1G223400.t1"; gene_id "Ledus.S1G223400"
Ledus.S1	AUGUSTUS	exon	19929508	19929617	.	-	.	transcript_id "Ledus.S1G223400.t1"; gene_id "Ledus.S1G223400"
Ledus.S1	AUGUSTUS	intron	19929618	19929776	.	-	.	transcript_id "Ledus.S1G223400.t1"; gene_id "Ledus.S1G223400"
Ledus.S1	AUGUSTUS	CDS	19929777	19929894	0.35	-	0	transcript_id "Ledus.S1G223400.t1"; gene_id "Ledus.S1G223400"
Ledus.S1	AUGUSTUS	exon	19929777	19929894	.	-	.	transcript_id "Ledus.S1G223400.t1"; gene_id "Ledus.S1G223400"
Ledus.S1	AUGUSTUS	start_codon	19929892	19929894	.	-	0	transcript_id "Ledus.S1G223400.t1"; gene_id "Ledus.S1G223400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6202.t1 is derived from g3645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29606426	29606984	.	+	.	Ledus.S1G362300
Ledus.S1	AUGUSTUS	transcript	29606426	29606984	.	+	.	transcript_id "Ledus.S1G362300.t1"; gene_id "Ledus.S1G362300"
Ledus.S1	AUGUSTUS	start_codon	29606426	29606428	.	+	0	transcript_id "Ledus.S1G362300.t1"; gene_id "Ledus.S1G362300"
Ledus.S1	AUGUSTUS	CDS	29606426	29606572	0.45	+	0	transcript_id "Ledus.S1G362300.t1"; gene_id "Ledus.S1G362300"
Ledus.S1	AUGUSTUS	exon	29606426	29606572	.	+	.	transcript_id "Ledus.S1G362300.t1"; gene_id "Ledus.S1G362300"
Ledus.S1	AUGUSTUS	intron	29606573	29606660	.	+	.	transcript_id "Ledus.S1G362300.t1"; gene_id "Ledus.S1G362300"
Ledus.S1	AUGUSTUS	CDS	29606661	29606984	0.64	+	0	transcript_id "Ledus.S1G362300.t1"; gene_id "Ledus.S1G362300"
Ledus.S1	AUGUSTUS	exon	29606661	29606984	.	+	.	transcript_id "Ledus.S1G362300.t1"; gene_id "Ledus.S1G362300"
Ledus.S1	AUGUSTUS	stop_codon	29606985	29606987	.	+	0	transcript_id "Ledus.S1G362300.t1"; gene_id "Ledus.S1G362300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10336.t1 is derived from g11366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14319778	14321265	.	-	.	Ledus.S3G181300
Ledus.S3	AUGUSTUS	transcript	14319778	14321265	.	-	.	transcript_id "Ledus.S3G181300.t1"; gene_id "Ledus.S3G181300"
Ledus.S3	AUGUSTUS	stop_codon	14319775	14319777	.	-	0	transcript_id "Ledus.S3G181300.t1"; gene_id "Ledus.S3G181300"
Ledus.S3	AUGUSTUS	CDS	14319778	14320875	0.42	-	0	transcript_id "Ledus.S3G181300.t1"; gene_id "Ledus.S3G181300"
Ledus.S3	AUGUSTUS	exon	14319778	14320875	.	-	.	transcript_id "Ledus.S3G181300.t1"; gene_id "Ledus.S3G181300"
Ledus.S3	AUGUSTUS	intron	14320876	14321004	.	-	.	transcript_id "Ledus.S3G181300.t1"; gene_id "Ledus.S3G181300"
Ledus.S3	AUGUSTUS	CDS	14321005	14321265	0.59	-	0	transcript_id "Ledus.S3G181300.t1"; gene_id "Ledus.S3G181300"
Ledus.S3	AUGUSTUS	exon	14321005	14321265	.	-	.	transcript_id "Ledus.S3G181300.t1"; gene_id "Ledus.S3G181300"
Ledus.S3	AUGUSTUS	start_codon	14321263	14321265	.	-	0	transcript_id "Ledus.S3G181300.t1"; gene_id "Ledus.S3G181300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9742.t1 is derived from g10772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9534168	9535427	.	+	.	Ledus.S3G121900
Ledus.S3	AUGUSTUS	transcript	9534168	9535427	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	start_codon	9534168	9534170	.	+	0	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	CDS	9534168	9534319	1	+	0	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	exon	9534168	9534319	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	intron	9534320	9534391	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	CDS	9534392	9534431	1	+	1	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	exon	9534392	9534431	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	intron	9534432	9534603	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	CDS	9534604	9534648	1	+	0	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	exon	9534604	9534648	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	intron	9534649	9534721	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	CDS	9534722	9534807	1	+	0	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	exon	9534722	9534807	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	intron	9534808	9534883	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	CDS	9534884	9535021	1	+	1	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	exon	9534884	9535021	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	intron	9535022	9535100	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	CDS	9535101	9535254	1	+	1	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	exon	9535101	9535254	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	intron	9535255	9535343	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	CDS	9535344	9535427	1	+	0	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	exon	9535344	9535427	.	+	.	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
Ledus.S3	AUGUSTUS	stop_codon	9535428	9535430	.	+	0	transcript_id "Ledus.S3G121900.t1"; gene_id "Ledus.S3G121900"
# This transcript jg10905.t2 is derived from g4523.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10905.t3 is derived from g4523.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10906.t1 is derived from g4524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	397973	400703	.	+	.	Ledus.S4G006200
Ledus.S4	AUGUSTUS	transcript	397973	400703	.	+	.	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	start_codon	397973	397975	.	+	0	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	CDS	397973	398026	1	+	0	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	exon	397973	398026	.	+	.	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	intron	398027	398110	.	+	.	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	CDS	398111	398652	1	+	0	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	exon	398111	398652	.	+	.	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	intron	398653	398826	.	+	.	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	CDS	398827	399990	1	+	1	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	exon	398827	399990	.	+	.	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	intron	399991	400552	.	+	.	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	CDS	400553	400703	0.89	+	1	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	exon	400553	400703	.	+	.	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
Ledus.S4	AUGUSTUS	stop_codon	400704	400706	.	+	0	transcript_id "Ledus.S4G006200.t1"; gene_id "Ledus.S4G006200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8340.t1 is derived from g13012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10900114	10902383	.	-	.	Ledus.S5G111800
Ledus.S5	AUGUSTUS	transcript	10900114	10902383	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	stop_codon	10900111	10900113	.	-	0	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	CDS	10900114	10900316	0.98	-	2	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	exon	10900114	10900316	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	intron	10900317	10900539	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	CDS	10900540	10900616	0.98	-	1	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	exon	10900540	10900616	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	intron	10900617	10900854	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	CDS	10900855	10900980	0.92	-	1	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	exon	10900855	10900980	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	intron	10900981	10901085	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	CDS	10901086	10901180	0.79	-	0	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	exon	10901086	10901180	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	intron	10901181	10901283	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	CDS	10901284	10901367	0.99	-	0	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	exon	10901284	10901367	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	intron	10901368	10901454	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	CDS	10901455	10901503	1	-	1	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	exon	10901455	10901503	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	intron	10901504	10901599	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	CDS	10901600	10901647	1	-	1	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	exon	10901600	10901647	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	intron	10901648	10901742	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	CDS	10901743	10901798	1	-	0	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	exon	10901743	10901798	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	intron	10901799	10901890	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	CDS	10901891	10901945	1	-	1	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	exon	10901891	10901945	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	intron	10901946	10902048	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	CDS	10902049	10902161	0.99	-	0	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	exon	10902049	10902161	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	intron	10902162	10902329	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	CDS	10902330	10902383	0.53	-	0	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	exon	10902330	10902383	.	-	.	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
Ledus.S5	AUGUSTUS	start_codon	10902381	10902383	.	-	0	transcript_id "Ledus.S5G111800.t1"; gene_id "Ledus.S5G111800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6259.t1 is derived from g3702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29947789	29951492	.	-	.	Ledus.S1G368000
Ledus.S1	AUGUSTUS	transcript	29947789	29951492	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	stop_codon	29947786	29947788	.	-	0	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29947789	29947971	1	-	0	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29947789	29947971	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	intron	29947972	29948060	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29948061	29948167	1	-	2	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29948061	29948167	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	intron	29948168	29948301	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29948302	29948518	1	-	0	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29948302	29948518	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	intron	29948519	29948606	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29948607	29948814	1	-	1	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29948607	29948814	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	intron	29948815	29948891	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29948892	29948978	1	-	1	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29948892	29948978	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	intron	29948979	29949142	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29949143	29949300	1	-	0	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29949143	29949300	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	intron	29949301	29949381	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29949382	29949590	1	-	2	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29949382	29949590	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	intron	29949591	29949678	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29949679	29949872	1	-	1	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29949679	29949872	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	intron	29949873	29949971	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29949972	29950036	1	-	0	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29949972	29950036	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	intron	29950037	29950141	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29950142	29950592	0.94	-	1	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29950142	29950592	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	intron	29950593	29950704	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29950705	29950952	0.93	-	0	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29950705	29950952	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	intron	29950953	29951064	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29951065	29951184	0.97	-	0	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29951065	29951184	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	intron	29951185	29951279	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	CDS	29951280	29951492	0.62	-	0	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	exon	29951280	29951492	.	-	.	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
Ledus.S1	AUGUSTUS	start_codon	29951490	29951492	.	-	0	transcript_id "Ledus.S1G368000.t1"; gene_id "Ledus.S1G368000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3194.t1 is derived from g629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6681545	6681955	.	+	.	Ledus.S1G061500
Ledus.S1	AUGUSTUS	transcript	6681545	6681955	.	+	.	transcript_id "Ledus.S1G061500.t1"; gene_id "Ledus.S1G061500"
Ledus.S1	AUGUSTUS	start_codon	6681545	6681547	.	+	0	transcript_id "Ledus.S1G061500.t1"; gene_id "Ledus.S1G061500"
Ledus.S1	AUGUSTUS	CDS	6681545	6681955	0.83	+	0	transcript_id "Ledus.S1G061500.t1"; gene_id "Ledus.S1G061500"
Ledus.S1	AUGUSTUS	exon	6681545	6681955	.	+	.	transcript_id "Ledus.S1G061500.t1"; gene_id "Ledus.S1G061500"
Ledus.S1	AUGUSTUS	stop_codon	6681956	6681958	.	+	0	transcript_id "Ledus.S1G061500.t1"; gene_id "Ledus.S1G061500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11849.t1 is derived from g5468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7297455	7299369	.	-	.	Ledus.S4G100500
Ledus.S4	AUGUSTUS	transcript	7297455	7299369	.	-	.	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	stop_codon	7297452	7297454	.	-	0	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	CDS	7297455	7297708	1	-	2	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	exon	7297455	7297708	.	-	.	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	intron	7297709	7297794	.	-	.	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	CDS	7297795	7298191	1	-	0	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	exon	7297795	7298191	.	-	.	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	intron	7298192	7298332	.	-	.	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	CDS	7298333	7298703	0.98	-	2	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	exon	7298333	7298703	.	-	.	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	intron	7298704	7298870	.	-	.	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	CDS	7298871	7299105	0.89	-	0	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	exon	7298871	7299105	.	-	.	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	intron	7299106	7299228	.	-	.	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	CDS	7299229	7299369	0.53	-	0	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	exon	7299229	7299369	.	-	.	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
Ledus.S4	AUGUSTUS	start_codon	7299367	7299369	.	-	0	transcript_id "Ledus.S4G100500.t1"; gene_id "Ledus.S4G100500"
# This transcript jg3965.t2 is derived from g1401.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3966.t1 is derived from g1402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13806730	13807780	.	+	.	Ledus.S1G138700
Ledus.S1	AUGUSTUS	transcript	13806730	13807780	.	+	.	transcript_id "Ledus.S1G138700.t1"; gene_id "Ledus.S1G138700"
Ledus.S1	AUGUSTUS	start_codon	13806730	13806732	.	+	0	transcript_id "Ledus.S1G138700.t1"; gene_id "Ledus.S1G138700"
Ledus.S1	AUGUSTUS	CDS	13806730	13807551	0.63	+	0	transcript_id "Ledus.S1G138700.t1"; gene_id "Ledus.S1G138700"
Ledus.S1	AUGUSTUS	exon	13806730	13807551	.	+	.	transcript_id "Ledus.S1G138700.t1"; gene_id "Ledus.S1G138700"
Ledus.S1	AUGUSTUS	intron	13807552	13807708	.	+	.	transcript_id "Ledus.S1G138700.t1"; gene_id "Ledus.S1G138700"
Ledus.S1	AUGUSTUS	CDS	13807709	13807780	0.92	+	0	transcript_id "Ledus.S1G138700.t1"; gene_id "Ledus.S1G138700"
Ledus.S1	AUGUSTUS	exon	13807709	13807780	.	+	.	transcript_id "Ledus.S1G138700.t1"; gene_id "Ledus.S1G138700"
Ledus.S1	AUGUSTUS	stop_codon	13807781	13807783	.	+	0	transcript_id "Ledus.S1G138700.t1"; gene_id "Ledus.S1G138700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5826.t1 is derived from g3268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27167835	27169322	.	-	.	Ledus.S1G324700
Ledus.S1	AUGUSTUS	transcript	27167835	27169322	.	-	.	transcript_id "Ledus.S1G324700.t1"; gene_id "Ledus.S1G324700"
Ledus.S1	AUGUSTUS	stop_codon	27167832	27167834	.	-	0	transcript_id "Ledus.S1G324700.t1"; gene_id "Ledus.S1G324700"
Ledus.S1	AUGUSTUS	CDS	27167835	27169322	0.57	-	0	transcript_id "Ledus.S1G324700.t1"; gene_id "Ledus.S1G324700"
Ledus.S1	AUGUSTUS	exon	27167835	27169322	.	-	.	transcript_id "Ledus.S1G324700.t1"; gene_id "Ledus.S1G324700"
Ledus.S1	AUGUSTUS	start_codon	27169320	27169322	.	-	0	transcript_id "Ledus.S1G324700.t1"; gene_id "Ledus.S1G324700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10946.t1 is derived from g4564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	755356	756879	.	+	.	Ledus.S4G010200
Ledus.S4	AUGUSTUS	transcript	755356	756879	.	+	.	transcript_id "Ledus.S4G010200.t1"; gene_id "Ledus.S4G010200"
Ledus.S4	AUGUSTUS	start_codon	755356	755358	.	+	0	transcript_id "Ledus.S4G010200.t1"; gene_id "Ledus.S4G010200"
Ledus.S4	AUGUSTUS	CDS	755356	756879	0.48	+	0	transcript_id "Ledus.S4G010200.t1"; gene_id "Ledus.S4G010200"
Ledus.S4	AUGUSTUS	exon	755356	756879	.	+	.	transcript_id "Ledus.S4G010200.t1"; gene_id "Ledus.S4G010200"
Ledus.S4	AUGUSTUS	stop_codon	756880	756882	.	+	0	transcript_id "Ledus.S4G010200.t1"; gene_id "Ledus.S4G010200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10835.t1 is derived from g4.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C22	AUGUSTUS	gene	8645	11239	.	-	.	Ledus.C22G000200
Ledus.C22	AUGUSTUS	transcript	8645	11239	.	-	.	transcript_id "Ledus.C22G000200.t1"; gene_id "Ledus.C22G000200"
Ledus.C22	AUGUSTUS	stop_codon	8642	8644	.	-	0	transcript_id "Ledus.C22G000200.t1"; gene_id "Ledus.C22G000200"
Ledus.C22	AUGUSTUS	CDS	8645	11239	0.22	-	0	transcript_id "Ledus.C22G000200.t1"; gene_id "Ledus.C22G000200"
Ledus.C22	AUGUSTUS	exon	8645	11239	.	-	.	transcript_id "Ledus.C22G000200.t1"; gene_id "Ledus.C22G000200"
Ledus.C22	AUGUSTUS	start_codon	11237	11239	.	-	0	transcript_id "Ledus.C22G000200.t1"; gene_id "Ledus.C22G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1728.t1 is derived from g8589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12198030	12200391	.	+	.	Ledus.S2G161000
Ledus.S2	AUGUSTUS	transcript	12198030	12200391	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	start_codon	12198030	12198032	.	+	0	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	CDS	12198030	12198419	1	+	0	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	exon	12198030	12198419	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	intron	12198420	12198646	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	CDS	12198647	12198829	1	+	0	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	exon	12198647	12198829	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	intron	12198830	12198961	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	CDS	12198962	12199064	1	+	0	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	exon	12198962	12199064	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	intron	12199065	12199174	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	CDS	12199175	12199254	1	+	2	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	exon	12199175	12199254	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	intron	12199255	12199393	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	CDS	12199394	12199471	1	+	0	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	exon	12199394	12199471	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	intron	12199472	12199587	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	CDS	12199588	12199679	1	+	0	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	exon	12199588	12199679	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	intron	12199680	12199765	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	CDS	12199766	12199877	1	+	1	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	exon	12199766	12199877	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	intron	12199878	12200056	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	CDS	12200057	12200182	1	+	0	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	exon	12200057	12200182	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	intron	12200183	12200283	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	CDS	12200284	12200391	0.99	+	0	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	exon	12200284	12200391	.	+	.	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
Ledus.S2	AUGUSTUS	stop_codon	12200392	12200394	.	+	0	transcript_id "Ledus.S2G161000.t1"; gene_id "Ledus.S2G161000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9415.t1 is derived from g10445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6607099	6608496	.	-	.	Ledus.S3G089200
Ledus.S3	AUGUSTUS	transcript	6607099	6608496	.	-	.	transcript_id "Ledus.S3G089200.t1"; gene_id "Ledus.S3G089200"
Ledus.S3	AUGUSTUS	stop_codon	6607096	6607098	.	-	0	transcript_id "Ledus.S3G089200.t1"; gene_id "Ledus.S3G089200"
Ledus.S3	AUGUSTUS	CDS	6607099	6607213	0.95	-	1	transcript_id "Ledus.S3G089200.t1"; gene_id "Ledus.S3G089200"
Ledus.S3	AUGUSTUS	exon	6607099	6607213	.	-	.	transcript_id "Ledus.S3G089200.t1"; gene_id "Ledus.S3G089200"
Ledus.S3	AUGUSTUS	intron	6607214	6607303	.	-	.	transcript_id "Ledus.S3G089200.t1"; gene_id "Ledus.S3G089200"
Ledus.S3	AUGUSTUS	CDS	6607304	6608496	0.97	-	0	transcript_id "Ledus.S3G089200.t1"; gene_id "Ledus.S3G089200"
Ledus.S3	AUGUSTUS	exon	6607304	6608496	.	-	.	transcript_id "Ledus.S3G089200.t1"; gene_id "Ledus.S3G089200"
Ledus.S3	AUGUSTUS	start_codon	6608494	6608496	.	-	0	transcript_id "Ledus.S3G089200.t1"; gene_id "Ledus.S3G089200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2084.t1 is derived from g8947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14648107	14649411	.	-	.	Ledus.S2G196600
Ledus.S2	AUGUSTUS	transcript	14648107	14649411	.	-	.	transcript_id "Ledus.S2G196600.t1"; gene_id "Ledus.S2G196600"
Ledus.S2	AUGUSTUS	stop_codon	14648104	14648106	.	-	0	transcript_id "Ledus.S2G196600.t1"; gene_id "Ledus.S2G196600"
Ledus.S2	AUGUSTUS	CDS	14648107	14649411	0.99	-	0	transcript_id "Ledus.S2G196600.t1"; gene_id "Ledus.S2G196600"
Ledus.S2	AUGUSTUS	exon	14648107	14649411	.	-	.	transcript_id "Ledus.S2G196600.t1"; gene_id "Ledus.S2G196600"
Ledus.S2	AUGUSTUS	start_codon	14649409	14649411	.	-	0	transcript_id "Ledus.S2G196600.t1"; gene_id "Ledus.S2G196600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9975.t1 is derived from g11005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11682556	11682852	.	-	.	Ledus.S3G145200
Ledus.S3	AUGUSTUS	transcript	11682556	11682852	.	-	.	transcript_id "Ledus.S3G145200.t1"; gene_id "Ledus.S3G145200"
Ledus.S3	AUGUSTUS	stop_codon	11682553	11682555	.	-	0	transcript_id "Ledus.S3G145200.t1"; gene_id "Ledus.S3G145200"
Ledus.S3	AUGUSTUS	CDS	11682556	11682852	0.71	-	0	transcript_id "Ledus.S3G145200.t1"; gene_id "Ledus.S3G145200"
Ledus.S3	AUGUSTUS	exon	11682556	11682852	.	-	.	transcript_id "Ledus.S3G145200.t1"; gene_id "Ledus.S3G145200"
Ledus.S3	AUGUSTUS	start_codon	11682850	11682852	.	-	0	transcript_id "Ledus.S3G145200.t1"; gene_id "Ledus.S3G145200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7838.t1 is derived from g12509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7399343	7399621	.	+	.	Ledus.S5G061600
Ledus.S5	AUGUSTUS	transcript	7399343	7399621	.	+	.	transcript_id "Ledus.S5G061600.t1"; gene_id "Ledus.S5G061600"
Ledus.S5	AUGUSTUS	start_codon	7399343	7399345	.	+	0	transcript_id "Ledus.S5G061600.t1"; gene_id "Ledus.S5G061600"
Ledus.S5	AUGUSTUS	CDS	7399343	7399621	0.89	+	0	transcript_id "Ledus.S5G061600.t1"; gene_id "Ledus.S5G061600"
Ledus.S5	AUGUSTUS	exon	7399343	7399621	.	+	.	transcript_id "Ledus.S5G061600.t1"; gene_id "Ledus.S5G061600"
Ledus.S5	AUGUSTUS	stop_codon	7399622	7399624	.	+	0	transcript_id "Ledus.S5G061600.t1"; gene_id "Ledus.S5G061600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4147.t1 is derived from g1583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14958099	14960350	.	+	.	Ledus.S1G156800
Ledus.S1	AUGUSTUS	transcript	14958099	14960350	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	start_codon	14958099	14958101	.	+	0	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	CDS	14958099	14958225	0.54	+	0	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	exon	14958099	14958225	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	intron	14958226	14958368	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	CDS	14958369	14958560	0.53	+	2	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	exon	14958369	14958560	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	intron	14958561	14958654	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	CDS	14958655	14958698	0.97	+	2	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	exon	14958655	14958698	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	intron	14958699	14958790	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	CDS	14958791	14958889	1	+	0	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	exon	14958791	14958889	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	intron	14958890	14958964	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	CDS	14958965	14959022	1	+	0	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	exon	14958965	14959022	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	intron	14959023	14959121	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	CDS	14959122	14959189	1	+	2	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	exon	14959122	14959189	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	intron	14959190	14959292	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	CDS	14959293	14959472	0.95	+	0	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	exon	14959293	14959472	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	intron	14959473	14959584	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	CDS	14959585	14959681	1	+	0	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	exon	14959585	14959681	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	intron	14959682	14959752	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	CDS	14959753	14959862	1	+	2	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	exon	14959753	14959862	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	intron	14959863	14959959	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	CDS	14959960	14960093	1	+	0	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	exon	14959960	14960093	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	intron	14960094	14960184	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	CDS	14960185	14960350	1	+	1	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	exon	14960185	14960350	.	+	.	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
Ledus.S1	AUGUSTUS	stop_codon	14960351	14960353	.	+	0	transcript_id "Ledus.S1G156800.t1"; gene_id "Ledus.S1G156800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6765.t1 is derived from g4208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34011202	34012155	.	+	.	Ledus.S1G418600
Ledus.S1	AUGUSTUS	transcript	34011202	34012155	.	+	.	transcript_id "Ledus.S1G418600.t1"; gene_id "Ledus.S1G418600"
Ledus.S1	AUGUSTUS	start_codon	34011202	34011204	.	+	0	transcript_id "Ledus.S1G418600.t1"; gene_id "Ledus.S1G418600"
Ledus.S1	AUGUSTUS	CDS	34011202	34011436	0.41	+	0	transcript_id "Ledus.S1G418600.t1"; gene_id "Ledus.S1G418600"
Ledus.S1	AUGUSTUS	exon	34011202	34011436	.	+	.	transcript_id "Ledus.S1G418600.t1"; gene_id "Ledus.S1G418600"
Ledus.S1	AUGUSTUS	intron	34011437	34011661	.	+	.	transcript_id "Ledus.S1G418600.t1"; gene_id "Ledus.S1G418600"
Ledus.S1	AUGUSTUS	CDS	34011662	34012155	0.79	+	2	transcript_id "Ledus.S1G418600.t1"; gene_id "Ledus.S1G418600"
Ledus.S1	AUGUSTUS	exon	34011662	34012155	.	+	.	transcript_id "Ledus.S1G418600.t1"; gene_id "Ledus.S1G418600"
Ledus.S1	AUGUSTUS	stop_codon	34012156	34012158	.	+	0	transcript_id "Ledus.S1G418600.t1"; gene_id "Ledus.S1G418600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4663.t1 is derived from g2101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18825870	18828819	.	+	.	Ledus.S1G208400
Ledus.S1	AUGUSTUS	transcript	18825870	18828819	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	start_codon	18825870	18825872	.	+	0	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18825870	18826093	0.86	+	0	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18825870	18826093	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	intron	18826094	18826331	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18826332	18826432	1	+	1	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18826332	18826432	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	intron	18826433	18826552	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18826553	18826660	1	+	2	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18826553	18826660	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	intron	18826661	18826762	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18826763	18826883	1	+	2	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18826763	18826883	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	intron	18826884	18827009	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18827010	18827139	1	+	1	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18827010	18827139	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	intron	18827140	18827271	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18827272	18827353	1	+	0	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18827272	18827353	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	intron	18827354	18827504	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18827505	18827593	1	+	2	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18827505	18827593	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	intron	18827594	18827718	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18827719	18827811	0.98	+	0	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18827719	18827811	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	intron	18827812	18827906	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18827907	18827975	1	+	0	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18827907	18827975	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	intron	18827976	18828067	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18828068	18828154	1	+	0	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18828068	18828154	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	intron	18828155	18828275	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18828276	18828347	1	+	0	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18828276	18828347	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	intron	18828348	18828442	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18828443	18828573	1	+	0	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18828443	18828573	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	intron	18828574	18828668	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	CDS	18828669	18828819	0.73	+	1	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	exon	18828669	18828819	.	+	.	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
Ledus.S1	AUGUSTUS	stop_codon	18828820	18828822	.	+	0	transcript_id "Ledus.S1G208400.t1"; gene_id "Ledus.S1G208400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7831.t1 is derived from g12502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7333984	7334769	.	-	.	Ledus.S5G060900
Ledus.S5	AUGUSTUS	transcript	7333984	7334769	.	-	.	transcript_id "Ledus.S5G060900.t1"; gene_id "Ledus.S5G060900"
Ledus.S5	AUGUSTUS	stop_codon	7333981	7333983	.	-	0	transcript_id "Ledus.S5G060900.t1"; gene_id "Ledus.S5G060900"
Ledus.S5	AUGUSTUS	CDS	7333984	7334476	0.26	-	1	transcript_id "Ledus.S5G060900.t1"; gene_id "Ledus.S5G060900"
Ledus.S5	AUGUSTUS	exon	7333984	7334476	.	-	.	transcript_id "Ledus.S5G060900.t1"; gene_id "Ledus.S5G060900"
Ledus.S5	AUGUSTUS	intron	7334477	7334662	.	-	.	transcript_id "Ledus.S5G060900.t1"; gene_id "Ledus.S5G060900"
Ledus.S5	AUGUSTUS	CDS	7334663	7334769	0.35	-	0	transcript_id "Ledus.S5G060900.t1"; gene_id "Ledus.S5G060900"
Ledus.S5	AUGUSTUS	exon	7334663	7334769	.	-	.	transcript_id "Ledus.S5G060900.t1"; gene_id "Ledus.S5G060900"
Ledus.S5	AUGUSTUS	start_codon	7334767	7334769	.	-	0	transcript_id "Ledus.S5G060900.t1"; gene_id "Ledus.S5G060900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg635.t1 is derived from g7496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3823693	3827961	.	+	.	Ledus.S2G051700
Ledus.S2	AUGUSTUS	transcript	3823693	3827961	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	start_codon	3823693	3823695	.	+	0	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3823693	3823828	0.28	+	0	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3823693	3823828	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3823829	3823939	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3823940	3824214	0.34	+	2	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3823940	3824214	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3824215	3824304	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3824305	3824398	0.54	+	0	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3824305	3824398	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3824399	3824710	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3824711	3824785	1	+	2	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3824711	3824785	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3824786	3824860	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3824861	3824953	0.54	+	2	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3824861	3824953	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3824954	3825064	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3825065	3825132	0.56	+	2	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3825065	3825132	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3825133	3825215	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3825216	3825294	1	+	0	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3825216	3825294	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3825295	3825387	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3825388	3825443	1	+	2	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3825388	3825443	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3825444	3825590	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3825591	3825716	0.87	+	0	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3825591	3825716	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3825717	3825840	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3825841	3825915	1	+	0	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3825841	3825915	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3825916	3826065	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3826066	3826153	1	+	0	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3826066	3826153	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3826154	3826295	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3826296	3826408	1	+	2	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3826296	3826408	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3826409	3826613	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3826614	3826673	1	+	0	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3826614	3826673	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3826674	3826848	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3826849	3826904	1	+	0	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3826849	3826904	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3826905	3827001	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3827002	3827100	1	+	1	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3827002	3827100	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3827101	3827232	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3827233	3827289	1	+	1	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3827233	3827289	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3827290	3827431	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3827432	3827536	1	+	1	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3827432	3827536	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3827537	3827623	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3827624	3827672	1	+	1	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3827624	3827672	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3827673	3827749	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3827750	3827818	1	+	0	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3827750	3827818	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	intron	3827819	3827892	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	CDS	3827893	3827961	1	+	0	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	exon	3827893	3827961	.	+	.	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
Ledus.S2	AUGUSTUS	stop_codon	3827962	3827964	.	+	0	transcript_id "Ledus.S2G051700.t1"; gene_id "Ledus.S2G051700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12372.t1 is derived from g5993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11476718	11477715	.	+	.	Ledus.S4G152800
Ledus.S4	AUGUSTUS	transcript	11476718	11477715	.	+	.	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	start_codon	11476718	11476720	.	+	0	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	CDS	11476718	11476797	0.99	+	0	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	exon	11476718	11476797	.	+	.	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	intron	11476798	11476888	.	+	.	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	CDS	11476889	11476917	1	+	1	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	exon	11476889	11476917	.	+	.	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	intron	11476918	11477015	.	+	.	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	CDS	11477016	11477171	0.61	+	2	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	exon	11477016	11477171	.	+	.	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	intron	11477172	11477257	.	+	.	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	CDS	11477258	11477425	0.61	+	2	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	exon	11477258	11477425	.	+	.	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	intron	11477426	11477500	.	+	.	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	CDS	11477501	11477715	0.81	+	2	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	exon	11477501	11477715	.	+	.	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
Ledus.S4	AUGUSTUS	stop_codon	11477716	11477718	.	+	0	transcript_id "Ledus.S4G152800.t1"; gene_id "Ledus.S4G152800"
# This transcript jg11475.t1 is derived from g5093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4660250	4665015	.	+	.	Ledus.S4G063100
Ledus.S4	AUGUSTUS	transcript	4660250	4665015	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	start_codon	4660250	4660252	.	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4660250	4660255	1	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4660250	4660255	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4660256	4660627	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4660628	4660696	1	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4660628	4660696	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4660697	4660894	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4660895	4661020	1	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4660895	4661020	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4661021	4661123	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4661124	4661186	0.76	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4661124	4661186	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4661187	4661397	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4661398	4661514	0.4	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4661398	4661514	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4661515	4661715	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4661716	4661790	0.6	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4661716	4661790	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4661791	4661889	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4661890	4662075	1	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4661890	4662075	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4662076	4662266	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4662267	4662413	1	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4662267	4662413	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4662414	4662567	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4662568	4662684	0.9	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4662568	4662684	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4662685	4662791	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4662792	4662953	0.99	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4662792	4662953	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4662954	4663068	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4663069	4663266	1	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4663069	4663266	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4663267	4663360	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4663361	4663546	1	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4663361	4663546	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4663547	4663682	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4663683	4663847	1	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4663683	4663847	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4663848	4663934	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4663935	4664126	1	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4663935	4664126	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4664127	4664208	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4664209	4664361	0.96	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4664209	4664361	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4664362	4664448	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4664449	4664532	0.99	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4664449	4664532	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4664533	4664620	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4664621	4664730	0.82	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4664621	4664730	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	intron	4664731	4664861	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	CDS	4664862	4665015	0.81	+	1	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	exon	4664862	4665015	.	+	.	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
Ledus.S4	AUGUSTUS	stop_codon	4665016	4665018	.	+	0	transcript_id "Ledus.S4G063100.t1"; gene_id "Ledus.S4G063100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10499.t1 is derived from g11529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15638979	15640525	.	-	.	Ledus.S3G197600
Ledus.S3	AUGUSTUS	transcript	15638979	15640525	.	-	.	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	stop_codon	15638976	15638978	.	-	0	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	CDS	15638979	15639050	0.99	-	0	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	exon	15638979	15639050	.	-	.	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	intron	15639051	15639143	.	-	.	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	CDS	15639144	15639650	1	-	0	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	exon	15639144	15639650	.	-	.	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	intron	15639651	15639742	.	-	.	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	CDS	15639743	15639967	1	-	0	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	exon	15639743	15639967	.	-	.	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	intron	15639968	15640081	.	-	.	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	CDS	15640082	15640525	0.98	-	0	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	exon	15640082	15640525	.	-	.	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
Ledus.S3	AUGUSTUS	start_codon	15640523	15640525	.	-	0	transcript_id "Ledus.S3G197600.t1"; gene_id "Ledus.S3G197600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6302.t1 is derived from g3745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30358282	30358721	.	+	.	Ledus.S1G372300
Ledus.S1	AUGUSTUS	transcript	30358282	30358721	.	+	.	transcript_id "Ledus.S1G372300.t1"; gene_id "Ledus.S1G372300"
Ledus.S1	AUGUSTUS	start_codon	30358282	30358284	.	+	0	transcript_id "Ledus.S1G372300.t1"; gene_id "Ledus.S1G372300"
Ledus.S1	AUGUSTUS	CDS	30358282	30358425	0.48	+	0	transcript_id "Ledus.S1G372300.t1"; gene_id "Ledus.S1G372300"
Ledus.S1	AUGUSTUS	exon	30358282	30358425	.	+	.	transcript_id "Ledus.S1G372300.t1"; gene_id "Ledus.S1G372300"
Ledus.S1	AUGUSTUS	intron	30358426	30358568	.	+	.	transcript_id "Ledus.S1G372300.t1"; gene_id "Ledus.S1G372300"
Ledus.S1	AUGUSTUS	CDS	30358569	30358721	0.78	+	0	transcript_id "Ledus.S1G372300.t1"; gene_id "Ledus.S1G372300"
Ledus.S1	AUGUSTUS	exon	30358569	30358721	.	+	.	transcript_id "Ledus.S1G372300.t1"; gene_id "Ledus.S1G372300"
Ledus.S1	AUGUSTUS	stop_codon	30358722	30358724	.	+	0	transcript_id "Ledus.S1G372300.t1"; gene_id "Ledus.S1G372300"
# This transcript jg9445.t2 is derived from g10475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9446.t1 is derived from g10476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6863722	6865121	.	-	.	Ledus.S3G092300
Ledus.S3	AUGUSTUS	transcript	6863722	6865121	.	-	.	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	stop_codon	6863719	6863721	.	-	0	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	CDS	6863722	6863762	0.69	-	2	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	exon	6863722	6863762	.	-	.	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	intron	6863763	6863920	.	-	.	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	CDS	6863921	6863980	0.97	-	2	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	exon	6863921	6863980	.	-	.	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	intron	6863981	6864113	.	-	.	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	CDS	6864114	6864318	0.54	-	0	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	exon	6864114	6864318	.	-	.	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	intron	6864319	6864398	.	-	.	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	CDS	6864399	6864625	0.44	-	2	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	exon	6864399	6864625	.	-	.	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	intron	6864626	6864822	.	-	.	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	CDS	6864823	6864870	0.49	-	2	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	exon	6864823	6864870	.	-	.	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	intron	6864871	6865030	.	-	.	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	CDS	6865031	6865121	0.74	-	0	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	exon	6865031	6865121	.	-	.	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	start_codon	6865119	6865121	.	-	0	transcript_id "Ledus.S3G092300.t1"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	transcript	6863733	6865121	.	-	.	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	stop_codon	6863730	6863732	.	-	0	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	CDS	6863733	6863746	0.88	-	2	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	exon	6863733	6863746	.	-	.	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	intron	6863747	6863920	.	-	.	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	CDS	6863921	6863980	0.88	-	2	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	exon	6863921	6863980	.	-	.	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	intron	6863981	6864113	.	-	.	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	CDS	6864114	6864318	0.49	-	0	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	exon	6864114	6864318	.	-	.	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	intron	6864319	6864398	.	-	.	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	CDS	6864399	6864625	0.39	-	2	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	exon	6864399	6864625	.	-	.	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	intron	6864626	6864822	.	-	.	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	CDS	6864823	6864870	0.55	-	2	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	exon	6864823	6864870	.	-	.	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	intron	6864871	6865030	.	-	.	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	CDS	6865031	6865121	0.77	-	0	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	exon	6865031	6865121	.	-	.	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
Ledus.S3	AUGUSTUS	start_codon	6865119	6865121	.	-	0	transcript_id "Ledus.S3G092300.t2"; gene_id "Ledus.S3G092300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2510.t1 is derived from g9373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18524042	18525855	.	-	.	Ledus.S2G239200
Ledus.S2	AUGUSTUS	transcript	18524042	18525855	.	-	.	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	stop_codon	18524039	18524041	.	-	0	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	CDS	18524042	18524352	0.78	-	2	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	exon	18524042	18524352	.	-	.	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	intron	18524353	18524645	.	-	.	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	CDS	18524646	18524934	0.83	-	0	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	exon	18524646	18524934	.	-	.	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	intron	18524935	18525039	.	-	.	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	CDS	18525040	18525235	0.98	-	1	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	exon	18525040	18525235	.	-	.	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	intron	18525236	18525370	.	-	.	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	CDS	18525371	18525855	0.63	-	0	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	exon	18525371	18525855	.	-	.	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
Ledus.S2	AUGUSTUS	start_codon	18525853	18525855	.	-	0	transcript_id "Ledus.S2G239200.t1"; gene_id "Ledus.S2G239200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2589.t1 is derived from g22.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	173100	174106	.	+	.	Ledus.S1G001000
Ledus.S1	AUGUSTUS	transcript	173100	174106	.	+	.	transcript_id "Ledus.S1G001000.t1"; gene_id "Ledus.S1G001000"
Ledus.S1	AUGUSTUS	start_codon	173100	173102	.	+	0	transcript_id "Ledus.S1G001000.t1"; gene_id "Ledus.S1G001000"
Ledus.S1	AUGUSTUS	CDS	173100	173650	0.78	+	0	transcript_id "Ledus.S1G001000.t1"; gene_id "Ledus.S1G001000"
Ledus.S1	AUGUSTUS	exon	173100	173650	.	+	.	transcript_id "Ledus.S1G001000.t1"; gene_id "Ledus.S1G001000"
Ledus.S1	AUGUSTUS	intron	173651	173745	.	+	.	transcript_id "Ledus.S1G001000.t1"; gene_id "Ledus.S1G001000"
Ledus.S1	AUGUSTUS	CDS	173746	173961	1	+	1	transcript_id "Ledus.S1G001000.t1"; gene_id "Ledus.S1G001000"
Ledus.S1	AUGUSTUS	exon	173746	173961	.	+	.	transcript_id "Ledus.S1G001000.t1"; gene_id "Ledus.S1G001000"
Ledus.S1	AUGUSTUS	intron	173962	174051	.	+	.	transcript_id "Ledus.S1G001000.t1"; gene_id "Ledus.S1G001000"
Ledus.S1	AUGUSTUS	CDS	174052	174106	1	+	1	transcript_id "Ledus.S1G001000.t1"; gene_id "Ledus.S1G001000"
Ledus.S1	AUGUSTUS	exon	174052	174106	.	+	.	transcript_id "Ledus.S1G001000.t1"; gene_id "Ledus.S1G001000"
Ledus.S1	AUGUSTUS	stop_codon	174107	174109	.	+	0	transcript_id "Ledus.S1G001000.t1"; gene_id "Ledus.S1G001000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2361.t1 is derived from g9224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17545238	17546241	.	+	.	Ledus.S2G224300
Ledus.S2	AUGUSTUS	transcript	17545238	17546241	.	+	.	transcript_id "Ledus.S2G224300.t1"; gene_id "Ledus.S2G224300"
Ledus.S2	AUGUSTUS	start_codon	17545238	17545240	.	+	0	transcript_id "Ledus.S2G224300.t1"; gene_id "Ledus.S2G224300"
Ledus.S2	AUGUSTUS	CDS	17545238	17546005	0.33	+	0	transcript_id "Ledus.S2G224300.t1"; gene_id "Ledus.S2G224300"
Ledus.S2	AUGUSTUS	exon	17545238	17546005	.	+	.	transcript_id "Ledus.S2G224300.t1"; gene_id "Ledus.S2G224300"
Ledus.S2	AUGUSTUS	intron	17546006	17546184	.	+	.	transcript_id "Ledus.S2G224300.t1"; gene_id "Ledus.S2G224300"
Ledus.S2	AUGUSTUS	CDS	17546185	17546241	0.53	+	0	transcript_id "Ledus.S2G224300.t1"; gene_id "Ledus.S2G224300"
Ledus.S2	AUGUSTUS	exon	17546185	17546241	.	+	.	transcript_id "Ledus.S2G224300.t1"; gene_id "Ledus.S2G224300"
Ledus.S2	AUGUSTUS	stop_codon	17546242	17546244	.	+	0	transcript_id "Ledus.S2G224300.t1"; gene_id "Ledus.S2G224300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg77.t1 is derived from g9490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	264476	266032	.	+	.	Ledus.C8G003700
Ledus.C8	AUGUSTUS	transcript	264476	266032	.	+	.	transcript_id "Ledus.C8G003700.t1"; gene_id "Ledus.C8G003700"
Ledus.C8	AUGUSTUS	start_codon	264476	264478	.	+	0	transcript_id "Ledus.C8G003700.t1"; gene_id "Ledus.C8G003700"
Ledus.C8	AUGUSTUS	CDS	264476	266032	1	+	0	transcript_id "Ledus.C8G003700.t1"; gene_id "Ledus.C8G003700"
Ledus.C8	AUGUSTUS	exon	264476	266032	.	+	.	transcript_id "Ledus.C8G003700.t1"; gene_id "Ledus.C8G003700"
Ledus.C8	AUGUSTUS	stop_codon	266033	266035	.	+	0	transcript_id "Ledus.C8G003700.t1"; gene_id "Ledus.C8G003700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1000.t1 is derived from g7861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6556186	6558249	.	+	.	Ledus.S2G088200
Ledus.S2	AUGUSTUS	transcript	6556186	6558249	.	+	.	transcript_id "Ledus.S2G088200.t1"; gene_id "Ledus.S2G088200"
Ledus.S2	AUGUSTUS	start_codon	6556186	6556188	.	+	0	transcript_id "Ledus.S2G088200.t1"; gene_id "Ledus.S2G088200"
Ledus.S2	AUGUSTUS	CDS	6556186	6556364	0.44	+	0	transcript_id "Ledus.S2G088200.t1"; gene_id "Ledus.S2G088200"
Ledus.S2	AUGUSTUS	exon	6556186	6556364	.	+	.	transcript_id "Ledus.S2G088200.t1"; gene_id "Ledus.S2G088200"
Ledus.S2	AUGUSTUS	intron	6556365	6556444	.	+	.	transcript_id "Ledus.S2G088200.t1"; gene_id "Ledus.S2G088200"
Ledus.S2	AUGUSTUS	CDS	6556445	6557912	1	+	1	transcript_id "Ledus.S2G088200.t1"; gene_id "Ledus.S2G088200"
Ledus.S2	AUGUSTUS	exon	6556445	6557912	.	+	.	transcript_id "Ledus.S2G088200.t1"; gene_id "Ledus.S2G088200"
Ledus.S2	AUGUSTUS	intron	6557913	6557988	.	+	.	transcript_id "Ledus.S2G088200.t1"; gene_id "Ledus.S2G088200"
Ledus.S2	AUGUSTUS	CDS	6557989	6558249	1	+	0	transcript_id "Ledus.S2G088200.t1"; gene_id "Ledus.S2G088200"
Ledus.S2	AUGUSTUS	exon	6557989	6558249	.	+	.	transcript_id "Ledus.S2G088200.t1"; gene_id "Ledus.S2G088200"
Ledus.S2	AUGUSTUS	stop_codon	6558250	6558252	.	+	0	transcript_id "Ledus.S2G088200.t1"; gene_id "Ledus.S2G088200"
# This transcript jg2980.t2 is derived from g415.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2980.t3 is derived from g415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg2981.t1 is derived from g416.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5077228	5084043	.	-	.	Ledus.S1G040200
Ledus.S1	AUGUSTUS	transcript	5077228	5084043	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	stop_codon	5077225	5077227	.	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5077228	5077248	1	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5077228	5077248	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5077249	5077348	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5077349	5077497	0.99	-	2	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5077349	5077497	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5077498	5077679	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5077680	5077733	1	-	2	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5077680	5077733	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5077734	5077976	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5077977	5078106	1	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5077977	5078106	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5078107	5078180	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5078181	5078592	1	-	1	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5078181	5078592	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5078593	5078673	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5078674	5079294	0.87	-	1	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5078674	5079294	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5079295	5079403	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5079404	5079588	0.56	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5079404	5079588	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5079589	5079703	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5079704	5079814	1	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5079704	5079814	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5079815	5080006	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5080007	5080222	0.96	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5080007	5080222	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5080223	5080348	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5080349	5080450	0.95	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5080349	5080450	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5080451	5080695	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5080696	5080824	0.99	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5080696	5080824	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5080825	5081144	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081145	5081198	0.87	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081145	5081198	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081199	5081309	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081310	5081432	1	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081310	5081432	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081433	5081573	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081574	5081648	1	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081574	5081648	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081649	5081828	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081829	5081898	1	-	1	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081829	5081898	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081899	5081983	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081984	5082042	1	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081984	5082042	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082043	5082163	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082164	5082373	0.95	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082164	5082373	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082374	5082519	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082520	5082607	1	-	1	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082520	5082607	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082608	5082740	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082741	5082818	0.94	-	1	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082741	5082818	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082819	5082914	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082915	5082974	0.94	-	1	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082915	5082974	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082975	5083140	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083141	5083262	0.7	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083141	5083262	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5083263	5083396	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083397	5083664	0.62	-	1	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083397	5083664	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5083665	5083761	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083762	5083834	1	-	2	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083762	5083834	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5083835	5083934	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083935	5084043	0.51	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083935	5084043	.	-	.	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	start_codon	5084041	5084043	.	-	0	transcript_id "Ledus.S1G040200.t1"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	transcript	5077228	5084043	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	stop_codon	5077225	5077227	.	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5077228	5077248	1	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5077228	5077248	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5077249	5077348	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5077349	5077497	0.99	-	2	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5077349	5077497	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5077498	5077679	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5077680	5077733	0.99	-	2	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5077680	5077733	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5077734	5077976	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5077977	5078106	0.99	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5077977	5078106	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5078107	5078180	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5078181	5078592	0.97	-	1	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5078181	5078592	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5078593	5078673	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5078674	5079294	0.86	-	1	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5078674	5079294	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5079295	5079403	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5079404	5079588	0.56	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5079404	5079588	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5079589	5079703	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5079704	5079814	1	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5079704	5079814	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5079815	5080006	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5080007	5080200	0.96	-	2	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5080007	5080200	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5080201	5080348	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5080349	5080378	0.91	-	2	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5080349	5080378	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5080379	5080450	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5080451	5080514	0.89	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5080451	5080514	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5080515	5080695	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5080696	5080824	0.98	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5080696	5080824	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5080825	5081144	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081145	5081198	0.88	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081145	5081198	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081199	5081309	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081310	5081432	1	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081310	5081432	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081433	5081573	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081574	5081648	1	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081574	5081648	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081649	5081828	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081829	5081898	1	-	1	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081829	5081898	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081899	5081983	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081984	5082042	1	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081984	5082042	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082043	5082163	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082164	5082373	0.92	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082164	5082373	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082374	5082519	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082520	5082607	1	-	1	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082520	5082607	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082608	5082740	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082741	5082818	0.98	-	1	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082741	5082818	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082819	5082914	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082915	5082974	0.98	-	1	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082915	5082974	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082975	5083140	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083141	5083262	0.64	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083141	5083262	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5083263	5083396	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083397	5083664	0.59	-	1	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083397	5083664	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5083665	5083761	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083762	5083834	1	-	2	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083762	5083834	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5083835	5083934	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083935	5084043	0.51	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083935	5084043	.	-	.	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	start_codon	5084041	5084043	.	-	0	transcript_id "Ledus.S1G040200.t2"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	transcript	5077228	5084043	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	stop_codon	5077225	5077227	.	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5077228	5077248	1	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5077228	5077248	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5077249	5077348	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5077349	5077497	0.98	-	2	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5077349	5077497	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5077498	5077679	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5077680	5077733	1	-	2	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5077680	5077733	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5077734	5077976	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5077977	5078106	1	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5077977	5078106	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5078107	5078180	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5078181	5078592	0.99	-	1	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5078181	5078592	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5078593	5078673	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5078674	5079294	0.82	-	1	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5078674	5079294	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5079295	5079403	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5079404	5079588	0.54	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5079404	5079588	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5079589	5079703	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5079704	5079814	1	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5079704	5079814	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5079815	5080006	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5080007	5080200	1	-	2	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5080007	5080200	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5080201	5080348	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5080349	5080378	0.94	-	2	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5080349	5080378	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5080379	5080450	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5080451	5080514	0.89	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5080451	5080514	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5080515	5080695	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5080696	5080824	0.99	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5080696	5080824	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5080825	5081144	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081145	5081198	0.88	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081145	5081198	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081199	5081309	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081310	5081432	1	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081310	5081432	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081433	5081573	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081574	5081648	1	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081574	5081648	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081649	5081828	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081829	5081898	1	-	1	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081829	5081898	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081899	5081983	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081984	5082042	1	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081984	5082042	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082043	5082163	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082164	5082373	0.96	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082164	5082373	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082374	5082740	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082741	5082818	0.88	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082741	5082818	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082819	5082916	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082917	5082974	0.88	-	1	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082917	5082974	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082975	5083140	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083141	5083262	0.64	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083141	5083262	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5083263	5083396	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083397	5083664	0.54	-	1	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083397	5083664	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5083665	5083761	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083762	5083834	1	-	2	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083762	5083834	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5083835	5083934	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083935	5084043	0.58	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083935	5084043	.	-	.	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	start_codon	5084041	5084043	.	-	0	transcript_id "Ledus.S1G040200.t3"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	transcript	5080754	5084043	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	stop_codon	5080751	5080753	.	-	0	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5080754	5080792	0.95	-	0	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5080754	5080792	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5080793	5081144	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081145	5081198	0.84	-	0	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081145	5081198	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081199	5081309	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081310	5081432	1	-	0	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081310	5081432	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081433	5081573	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081574	5081648	1	-	0	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081574	5081648	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081649	5081828	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081829	5081898	1	-	1	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081829	5081898	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5081899	5081983	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5081984	5082042	1	-	0	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5081984	5082042	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082043	5082163	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082164	5082373	0.95	-	0	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082164	5082373	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082374	5082519	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082520	5082607	1	-	1	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082520	5082607	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082608	5082740	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082741	5082818	0.98	-	1	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082741	5082818	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082819	5082914	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5082915	5082974	0.98	-	1	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5082915	5082974	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5082975	5083140	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083141	5083262	0.59	-	0	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083141	5083262	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5083263	5083396	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083397	5083664	0.5	-	1	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083397	5083664	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5083665	5083761	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083762	5083834	1	-	2	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083762	5083834	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	intron	5083835	5083934	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	CDS	5083935	5084043	0.51	-	0	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	exon	5083935	5084043	.	-	.	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
Ledus.S1	AUGUSTUS	start_codon	5084041	5084043	.	-	0	transcript_id "Ledus.S1G040200.t4"; gene_id "Ledus.S1G040200"
# This transcript jg4298.t2 is derived from g1734.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4299.t1 is derived from g1735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16108130	16112036	.	+	.	Ledus.S1G172000
Ledus.S1	AUGUSTUS	transcript	16108130	16112036	.	+	.	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	start_codon	16108130	16108132	.	+	0	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	CDS	16108130	16108325	0.95	+	0	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	exon	16108130	16108325	.	+	.	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	intron	16108326	16108401	.	+	.	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	CDS	16108402	16108515	1	+	2	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	exon	16108402	16108515	.	+	.	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	intron	16108516	16108602	.	+	.	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	CDS	16108603	16108679	1	+	2	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	exon	16108603	16108679	.	+	.	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	intron	16108680	16108775	.	+	.	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	CDS	16108776	16112036	1	+	0	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	exon	16108776	16112036	.	+	.	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
Ledus.S1	AUGUSTUS	stop_codon	16112037	16112039	.	+	0	transcript_id "Ledus.S1G172000.t1"; gene_id "Ledus.S1G172000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4167.t1 is derived from g1603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15090634	15092363	.	-	.	Ledus.S1G158800
Ledus.S1	AUGUSTUS	transcript	15090634	15092363	.	-	.	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	stop_codon	15090631	15090633	.	-	0	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	CDS	15090634	15091037	1	-	2	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	exon	15090634	15091037	.	-	.	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	intron	15091038	15091124	.	-	.	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	CDS	15091125	15091290	1	-	0	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	exon	15091125	15091290	.	-	.	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	intron	15091291	15091396	.	-	.	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	CDS	15091397	15091588	0.82	-	0	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	exon	15091397	15091588	.	-	.	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	intron	15091589	15091711	.	-	.	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	CDS	15091712	15092190	0.55	-	2	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	exon	15091712	15092190	.	-	.	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	intron	15092191	15092341	.	-	.	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	CDS	15092342	15092363	0.82	-	0	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	exon	15092342	15092363	.	-	.	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
Ledus.S1	AUGUSTUS	start_codon	15092361	15092363	.	-	0	transcript_id "Ledus.S1G158800.t1"; gene_id "Ledus.S1G158800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10753.t1 is derived from g11784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17493568	17499573	.	+	.	Ledus.S3G223000
Ledus.S3	AUGUSTUS	transcript	17493568	17499573	.	+	.	transcript_id "Ledus.S3G223000.t1"; gene_id "Ledus.S3G223000"
Ledus.S3	AUGUSTUS	start_codon	17493568	17493570	.	+	0	transcript_id "Ledus.S3G223000.t1"; gene_id "Ledus.S3G223000"
Ledus.S3	AUGUSTUS	CDS	17493568	17493903	0.1	+	0	transcript_id "Ledus.S3G223000.t1"; gene_id "Ledus.S3G223000"
Ledus.S3	AUGUSTUS	exon	17493568	17493903	.	+	.	transcript_id "Ledus.S3G223000.t1"; gene_id "Ledus.S3G223000"
Ledus.S3	AUGUSTUS	intron	17493904	17498505	.	+	.	transcript_id "Ledus.S3G223000.t1"; gene_id "Ledus.S3G223000"
Ledus.S3	AUGUSTUS	CDS	17498506	17498617	0.01	+	0	transcript_id "Ledus.S3G223000.t1"; gene_id "Ledus.S3G223000"
Ledus.S3	AUGUSTUS	exon	17498506	17498617	.	+	.	transcript_id "Ledus.S3G223000.t1"; gene_id "Ledus.S3G223000"
Ledus.S3	AUGUSTUS	intron	17498618	17499514	.	+	.	transcript_id "Ledus.S3G223000.t1"; gene_id "Ledus.S3G223000"
Ledus.S3	AUGUSTUS	CDS	17499515	17499573	0.03	+	2	transcript_id "Ledus.S3G223000.t1"; gene_id "Ledus.S3G223000"
Ledus.S3	AUGUSTUS	exon	17499515	17499573	.	+	.	transcript_id "Ledus.S3G223000.t1"; gene_id "Ledus.S3G223000"
Ledus.S3	AUGUSTUS	stop_codon	17499574	17499576	.	+	0	transcript_id "Ledus.S3G223000.t1"; gene_id "Ledus.S3G223000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg99.t1 is derived from g9512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	409525	411549	.	+	.	Ledus.C8G005900
Ledus.C8	AUGUSTUS	transcript	409525	411549	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	start_codon	409525	409527	.	+	0	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	CDS	409525	409534	0.28	+	0	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	exon	409525	409534	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	intron	409535	409665	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	CDS	409666	409750	0.61	+	2	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	exon	409666	409750	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	intron	409751	409917	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	CDS	409918	409968	0.61	+	1	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	exon	409918	409968	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	intron	409969	410053	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	CDS	410054	410321	1	+	1	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	exon	410054	410321	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	intron	410322	410421	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	CDS	410422	410624	1	+	0	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	exon	410422	410624	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	intron	410625	410758	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	CDS	410759	410946	1	+	1	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	exon	410759	410946	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	intron	410947	411059	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	CDS	411060	411217	0.57	+	2	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	exon	411060	411217	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	intron	411218	411315	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	CDS	411316	411549	0.55	+	0	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	exon	411316	411549	.	+	.	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
Ledus.C8	AUGUSTUS	stop_codon	411550	411552	.	+	0	transcript_id "Ledus.C8G005900.t1"; gene_id "Ledus.C8G005900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4735.t1 is derived from g2173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19409254	19411496	.	-	.	Ledus.S1G215600
Ledus.S1	AUGUSTUS	transcript	19409254	19411322	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	stop_codon	19409251	19409253	.	-	0	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19409254	19409358	1	-	0	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19409254	19409358	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19409359	19409456	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19409457	19409545	1	-	2	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19409457	19409545	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19409546	19409627	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19409628	19409716	1	-	1	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19409628	19409716	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19409717	19409801	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19409802	19409842	1	-	0	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19409802	19409842	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19409843	19409947	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19409948	19409983	0.99	-	0	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19409948	19409983	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19409984	19410062	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19410063	19410155	1	-	0	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19410063	19410155	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19410156	19410245	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19410246	19410339	1	-	1	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19410246	19410339	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19410340	19410442	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19410443	19410507	1	-	0	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19410443	19410507	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19410508	19410629	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19410630	19410702	1	-	1	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19410630	19410702	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19410703	19410797	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19410798	19410890	1	-	1	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19410798	19410890	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19410891	19410990	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19410991	19411080	1	-	1	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19410991	19411080	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19411081	19411162	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19411163	19411215	1	-	0	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19411163	19411215	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19411216	19411298	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19411299	19411322	1	-	0	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19411299	19411322	.	-	.	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	start_codon	19411320	19411322	.	-	0	transcript_id "Ledus.S1G215600.t1"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	transcript	19409254	19411496	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	stop_codon	19409251	19409253	.	-	0	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19409254	19409358	1	-	0	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19409254	19409358	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19409359	19409456	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19409457	19409545	1	-	2	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19409457	19409545	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19409546	19409627	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19409628	19409716	1	-	1	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19409628	19409716	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19409717	19409801	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19409802	19409842	1	-	0	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19409802	19409842	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19409843	19409947	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19409948	19409983	0.97	-	0	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19409948	19409983	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19409984	19410062	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19410063	19410155	1	-	0	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19410063	19410155	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19410156	19410245	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19410246	19410339	1	-	1	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19410246	19410339	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19410340	19410442	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19410443	19410507	1	-	0	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19410443	19410507	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19410508	19410629	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19410630	19410702	1	-	1	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19410630	19410702	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19410703	19410797	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19410798	19410890	1	-	1	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19410798	19410890	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19410891	19410990	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19410991	19411080	1	-	1	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19410991	19411080	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19411081	19411162	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19411163	19411259	0.97	-	2	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19411163	19411259	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	intron	19411260	19411411	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	CDS	19411412	19411496	0.58	-	0	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	exon	19411412	19411496	.	-	.	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
Ledus.S1	AUGUSTUS	start_codon	19411494	19411496	.	-	0	transcript_id "Ledus.S1G215600.t2"; gene_id "Ledus.S1G215600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6118.t1 is derived from g3561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29001461	29001793	.	+	.	Ledus.S1G353900
Ledus.S1	AUGUSTUS	transcript	29001461	29001793	.	+	.	transcript_id "Ledus.S1G353900.t1"; gene_id "Ledus.S1G353900"
Ledus.S1	AUGUSTUS	start_codon	29001461	29001463	.	+	0	transcript_id "Ledus.S1G353900.t1"; gene_id "Ledus.S1G353900"
Ledus.S1	AUGUSTUS	CDS	29001461	29001793	0.65	+	0	transcript_id "Ledus.S1G353900.t1"; gene_id "Ledus.S1G353900"
Ledus.S1	AUGUSTUS	exon	29001461	29001793	.	+	.	transcript_id "Ledus.S1G353900.t1"; gene_id "Ledus.S1G353900"
Ledus.S1	AUGUSTUS	stop_codon	29001794	29001796	.	+	0	transcript_id "Ledus.S1G353900.t1"; gene_id "Ledus.S1G353900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5819.t1 is derived from g3261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27085166	27087950	.	-	.	Ledus.S1G324000
Ledus.S1	AUGUSTUS	transcript	27085166	27087950	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	stop_codon	27085163	27085165	.	-	0	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	CDS	27085166	27085306	0.17	-	0	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	exon	27085166	27085306	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	intron	27085307	27085443	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	CDS	27085444	27085548	1	-	0	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	exon	27085444	27085548	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	intron	27085549	27085790	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	CDS	27085791	27085897	1	-	2	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	exon	27085791	27085897	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	intron	27085898	27085982	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	CDS	27085983	27086122	1	-	1	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	exon	27085983	27086122	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	intron	27086123	27086235	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	CDS	27086236	27086327	1	-	0	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	exon	27086236	27086327	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	intron	27086328	27086466	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	CDS	27086467	27086517	1	-	0	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	exon	27086467	27086517	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	intron	27086518	27086636	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	CDS	27086637	27086833	1	-	2	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	exon	27086637	27086833	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	intron	27086834	27086983	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	CDS	27086984	27087173	0.97	-	0	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	exon	27086984	27087173	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	intron	27087174	27087281	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	CDS	27087282	27087347	1	-	0	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	exon	27087282	27087347	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	intron	27087348	27087614	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	CDS	27087615	27087950	0.72	-	0	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	exon	27087615	27087950	.	-	.	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
Ledus.S1	AUGUSTUS	start_codon	27087948	27087950	.	-	0	transcript_id "Ledus.S1G324000.t1"; gene_id "Ledus.S1G324000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2271.t1 is derived from g9134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16815750	16816496	.	-	.	Ledus.S2G215300
Ledus.S2	AUGUSTUS	transcript	16815750	16816496	.	-	.	transcript_id "Ledus.S2G215300.t1"; gene_id "Ledus.S2G215300"
Ledus.S2	AUGUSTUS	stop_codon	16815747	16815749	.	-	0	transcript_id "Ledus.S2G215300.t1"; gene_id "Ledus.S2G215300"
Ledus.S2	AUGUSTUS	CDS	16815750	16816496	1	-	0	transcript_id "Ledus.S2G215300.t1"; gene_id "Ledus.S2G215300"
Ledus.S2	AUGUSTUS	exon	16815750	16816496	.	-	.	transcript_id "Ledus.S2G215300.t1"; gene_id "Ledus.S2G215300"
Ledus.S2	AUGUSTUS	start_codon	16816494	16816496	.	-	0	transcript_id "Ledus.S2G215300.t1"; gene_id "Ledus.S2G215300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg294.t1 is derived from g7155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1459099	1460409	.	-	.	Ledus.S2G017600
Ledus.S2	AUGUSTUS	transcript	1459099	1460409	.	-	.	transcript_id "Ledus.S2G017600.t1"; gene_id "Ledus.S2G017600"
Ledus.S2	AUGUSTUS	stop_codon	1459096	1459098	.	-	0	transcript_id "Ledus.S2G017600.t1"; gene_id "Ledus.S2G017600"
Ledus.S2	AUGUSTUS	CDS	1459099	1459558	1	-	1	transcript_id "Ledus.S2G017600.t1"; gene_id "Ledus.S2G017600"
Ledus.S2	AUGUSTUS	exon	1459099	1459558	.	-	.	transcript_id "Ledus.S2G017600.t1"; gene_id "Ledus.S2G017600"
Ledus.S2	AUGUSTUS	intron	1459559	1459642	.	-	.	transcript_id "Ledus.S2G017600.t1"; gene_id "Ledus.S2G017600"
Ledus.S2	AUGUSTUS	CDS	1459643	1460409	0.81	-	0	transcript_id "Ledus.S2G017600.t1"; gene_id "Ledus.S2G017600"
Ledus.S2	AUGUSTUS	exon	1459643	1460409	.	-	.	transcript_id "Ledus.S2G017600.t1"; gene_id "Ledus.S2G017600"
Ledus.S2	AUGUSTUS	start_codon	1460407	1460409	.	-	0	transcript_id "Ledus.S2G017600.t1"; gene_id "Ledus.S2G017600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9942.t1 is derived from g10972.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11401920	11402249	.	-	.	Ledus.S3G141900
Ledus.S3	AUGUSTUS	transcript	11401920	11402249	.	-	.	transcript_id "Ledus.S3G141900.t1"; gene_id "Ledus.S3G141900"
Ledus.S3	AUGUSTUS	stop_codon	11401917	11401919	.	-	0	transcript_id "Ledus.S3G141900.t1"; gene_id "Ledus.S3G141900"
Ledus.S3	AUGUSTUS	CDS	11401920	11402249	0.65	-	0	transcript_id "Ledus.S3G141900.t1"; gene_id "Ledus.S3G141900"
Ledus.S3	AUGUSTUS	exon	11401920	11402249	.	-	.	transcript_id "Ledus.S3G141900.t1"; gene_id "Ledus.S3G141900"
Ledus.S3	AUGUSTUS	start_codon	11402247	11402249	.	-	0	transcript_id "Ledus.S3G141900.t1"; gene_id "Ledus.S3G141900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4274.t1 is derived from g1710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15897732	15904697	.	-	.	Ledus.S1G169500
Ledus.S1	AUGUSTUS	transcript	15897732	15904697	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	stop_codon	15897729	15897731	.	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15897732	15897752	0.82	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15897732	15897752	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15897753	15897948	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15897949	15897995	0.66	-	2	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15897949	15897995	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15897996	15898174	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15898175	15898277	0.81	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15898175	15898277	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15898278	15898412	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15898413	15898463	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15898413	15898463	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15898464	15898562	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15898563	15898640	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15898563	15898640	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15898641	15898732	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15898733	15898852	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15898733	15898852	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15898853	15898993	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15898994	15899066	1	-	1	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15898994	15899066	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15899067	15899322	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15899323	15899388	1	-	1	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15899323	15899388	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15899389	15899544	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15899545	15899615	0.99	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15899545	15899615	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15899616	15899726	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15899727	15899852	0.98	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15899727	15899852	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15899853	15899944	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15899945	15900141	0.65	-	2	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15899945	15900141	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15900142	15900271	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15900272	15900374	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15900272	15900374	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15900375	15900494	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15900495	15900558	1	-	1	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15900495	15900558	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15900559	15900697	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15900698	15901218	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15900698	15901218	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15901219	15901311	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15901312	15901734	0.88	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15901312	15901734	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15901735	15901942	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15901943	15902072	1	-	1	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15901943	15902072	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15902073	15902234	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15902235	15902269	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15902235	15902269	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15902270	15902425	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15902426	15902545	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15902426	15902545	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15902546	15902721	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15902722	15902805	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15902722	15902805	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15902806	15903112	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15903113	15903199	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15903113	15903199	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15903200	15903298	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15903299	15903388	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15903299	15903388	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15903389	15903484	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15903485	15903574	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15903485	15903574	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15903575	15903696	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15903697	15903761	1	-	2	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15903697	15903761	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15903762	15903879	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15903880	15903958	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15903880	15903958	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15903959	15904089	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15904090	15904164	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15904090	15904164	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15904165	15904374	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15904375	15904491	1	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15904375	15904491	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	intron	15904492	15904694	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	CDS	15904695	15904697	0.9	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	exon	15904695	15904697	.	-	.	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
Ledus.S1	AUGUSTUS	start_codon	15904695	15904697	.	-	0	transcript_id "Ledus.S1G169500.t1"; gene_id "Ledus.S1G169500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6855.t1 is derived from g4299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34705622	34706947	.	-	.	Ledus.S1G427600
Ledus.S1	AUGUSTUS	transcript	34705622	34706947	.	-	.	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	stop_codon	34705619	34705621	.	-	0	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	CDS	34705622	34705629	0.82	-	2	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	exon	34705622	34705629	.	-	.	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	intron	34705630	34705732	.	-	.	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	CDS	34705733	34705835	0.85	-	0	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	exon	34705733	34705835	.	-	.	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	intron	34705836	34706335	.	-	.	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	CDS	34706336	34706559	0.71	-	2	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	exon	34706336	34706559	.	-	.	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	intron	34706560	34706856	.	-	.	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	CDS	34706857	34706947	0.73	-	0	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	exon	34706857	34706947	.	-	.	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
Ledus.S1	AUGUSTUS	start_codon	34706945	34706947	.	-	0	transcript_id "Ledus.S1G427600.t1"; gene_id "Ledus.S1G427600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8236.t1 is derived from g12907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10077417	10078559	.	-	.	Ledus.S5G101400
Ledus.S5	AUGUSTUS	transcript	10077417	10078559	.	-	.	transcript_id "Ledus.S5G101400.t1"; gene_id "Ledus.S5G101400"
Ledus.S5	AUGUSTUS	stop_codon	10077414	10077416	.	-	0	transcript_id "Ledus.S5G101400.t1"; gene_id "Ledus.S5G101400"
Ledus.S5	AUGUSTUS	CDS	10077417	10078559	0.75	-	0	transcript_id "Ledus.S5G101400.t1"; gene_id "Ledus.S5G101400"
Ledus.S5	AUGUSTUS	exon	10077417	10078559	.	-	.	transcript_id "Ledus.S5G101400.t1"; gene_id "Ledus.S5G101400"
Ledus.S5	AUGUSTUS	start_codon	10078557	10078559	.	-	0	transcript_id "Ledus.S5G101400.t1"; gene_id "Ledus.S5G101400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11392.t1 is derived from g5010.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3966653	3971287	.	+	.	Ledus.S4G054800
Ledus.S4	AUGUSTUS	transcript	3966653	3971287	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	start_codon	3966653	3966655	.	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3966653	3966767	0.88	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3966653	3966767	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3966768	3966950	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3966951	3967020	1	+	2	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3966951	3967020	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3967021	3967175	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3967176	3967227	1	+	1	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3967176	3967227	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3967228	3967319	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3967320	3967397	1	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3967320	3967397	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3967398	3967598	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3967599	3967677	0.97	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3967599	3967677	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3967678	3967781	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3967782	3967867	0.97	+	2	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3967782	3967867	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3967868	3968002	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3968003	3968060	1	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3968003	3968060	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3968061	3968233	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3968234	3968347	1	+	2	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3968234	3968347	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3968348	3968488	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3968489	3968546	1	+	2	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3968489	3968546	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3968547	3968641	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3968642	3968738	1	+	1	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3968642	3968738	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3968739	3968817	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3968818	3968853	1	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3968818	3968853	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3968854	3968988	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3968989	3969125	1	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3968989	3969125	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3969126	3969332	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3969333	3969403	1	+	1	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3969333	3969403	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3969404	3969510	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3969511	3969564	1	+	2	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3969511	3969564	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3969565	3969712	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3969713	3969855	1	+	2	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3969713	3969855	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3969856	3970055	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3970056	3970199	1	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3970056	3970199	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3970200	3970325	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3970326	3970562	1	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3970326	3970562	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3970563	3970675	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3970676	3970738	0.98	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3970676	3970738	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3970739	3970852	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3970853	3971080	0.98	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3970853	3971080	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	intron	3971081	3971170	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	CDS	3971171	3971287	0.78	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	exon	3971171	3971287	.	+	.	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
Ledus.S4	AUGUSTUS	stop_codon	3971288	3971290	.	+	0	transcript_id "Ledus.S4G054800.t1"; gene_id "Ledus.S4G054800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1978.t1 is derived from g8841.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13999383	14000273	.	+	.	Ledus.S2G186000
Ledus.S2	AUGUSTUS	transcript	13999383	14000273	.	+	.	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	start_codon	13999383	13999385	.	+	0	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	CDS	13999383	13999491	0.96	+	0	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	exon	13999383	13999491	.	+	.	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	intron	13999492	13999596	.	+	.	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	CDS	13999597	13999653	1	+	2	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	exon	13999597	13999653	.	+	.	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	intron	13999654	13999882	.	+	.	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	CDS	13999883	13999894	0.95	+	2	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	exon	13999883	13999894	.	+	.	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	intron	13999895	14000001	.	+	.	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	CDS	14000002	14000066	0.99	+	2	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	exon	14000002	14000066	.	+	.	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	intron	14000067	14000210	.	+	.	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	CDS	14000211	14000273	1	+	0	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	exon	14000211	14000273	.	+	.	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
Ledus.S2	AUGUSTUS	stop_codon	14000274	14000276	.	+	0	transcript_id "Ledus.S2G186000.t1"; gene_id "Ledus.S2G186000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2787.t1 is derived from g221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3709264	3710877	.	-	.	Ledus.S1G020800
Ledus.S1	AUGUSTUS	transcript	3709264	3710877	.	-	.	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	stop_codon	3709261	3709263	.	-	0	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	CDS	3709264	3709341	0.86	-	0	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	exon	3709264	3709341	.	-	.	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	intron	3709342	3709430	.	-	.	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	CDS	3709431	3709895	1	-	0	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	exon	3709431	3709895	.	-	.	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	intron	3709896	3709976	.	-	.	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	CDS	3709977	3710071	1	-	2	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	exon	3709977	3710071	.	-	.	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	intron	3710072	3710216	.	-	.	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	CDS	3710217	3710877	0.55	-	0	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	exon	3710217	3710877	.	-	.	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
Ledus.S1	AUGUSTUS	start_codon	3710875	3710877	.	-	0	transcript_id "Ledus.S1G020800.t1"; gene_id "Ledus.S1G020800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10880.t1 is derived from g4498.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	297732	298043	.	+	.	Ledus.S4G003600
Ledus.S4	AUGUSTUS	transcript	297732	298043	.	+	.	transcript_id "Ledus.S4G003600.t1"; gene_id "Ledus.S4G003600"
Ledus.S4	AUGUSTUS	start_codon	297732	297734	.	+	0	transcript_id "Ledus.S4G003600.t1"; gene_id "Ledus.S4G003600"
Ledus.S4	AUGUSTUS	CDS	297732	298043	0.45	+	0	transcript_id "Ledus.S4G003600.t1"; gene_id "Ledus.S4G003600"
Ledus.S4	AUGUSTUS	exon	297732	298043	.	+	.	transcript_id "Ledus.S4G003600.t1"; gene_id "Ledus.S4G003600"
Ledus.S4	AUGUSTUS	stop_codon	298044	298046	.	+	0	transcript_id "Ledus.S4G003600.t1"; gene_id "Ledus.S4G003600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3293.t1 is derived from g728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7340195	7341002	.	+	.	Ledus.S1G071400
Ledus.S1	AUGUSTUS	transcript	7340195	7341002	.	+	.	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	start_codon	7340195	7340197	.	+	0	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	CDS	7340195	7340299	1	+	0	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	exon	7340195	7340299	.	+	.	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	intron	7340300	7340379	.	+	.	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	CDS	7340380	7340442	1	+	0	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	exon	7340380	7340442	.	+	.	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	intron	7340443	7340567	.	+	.	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	CDS	7340568	7340642	1	+	0	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	exon	7340568	7340642	.	+	.	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	intron	7340643	7340736	.	+	.	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	CDS	7340737	7340795	1	+	0	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	exon	7340737	7340795	.	+	.	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	intron	7340796	7340944	.	+	.	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	CDS	7340945	7341002	0.98	+	1	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	exon	7340945	7341002	.	+	.	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
Ledus.S1	AUGUSTUS	stop_codon	7341003	7341005	.	+	0	transcript_id "Ledus.S1G071400.t1"; gene_id "Ledus.S1G071400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3786.t1 is derived from g1222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12117660	12118401	.	+	.	Ledus.S1G120700
Ledus.S1	AUGUSTUS	transcript	12117660	12118401	.	+	.	transcript_id "Ledus.S1G120700.t1"; gene_id "Ledus.S1G120700"
Ledus.S1	AUGUSTUS	start_codon	12117660	12117662	.	+	0	transcript_id "Ledus.S1G120700.t1"; gene_id "Ledus.S1G120700"
Ledus.S1	AUGUSTUS	CDS	12117660	12118209	0.27	+	0	transcript_id "Ledus.S1G120700.t1"; gene_id "Ledus.S1G120700"
Ledus.S1	AUGUSTUS	exon	12117660	12118209	.	+	.	transcript_id "Ledus.S1G120700.t1"; gene_id "Ledus.S1G120700"
Ledus.S1	AUGUSTUS	intron	12118210	12118342	.	+	.	transcript_id "Ledus.S1G120700.t1"; gene_id "Ledus.S1G120700"
Ledus.S1	AUGUSTUS	CDS	12118343	12118401	0.51	+	2	transcript_id "Ledus.S1G120700.t1"; gene_id "Ledus.S1G120700"
Ledus.S1	AUGUSTUS	exon	12118343	12118401	.	+	.	transcript_id "Ledus.S1G120700.t1"; gene_id "Ledus.S1G120700"
Ledus.S1	AUGUSTUS	stop_codon	12118402	12118404	.	+	0	transcript_id "Ledus.S1G120700.t1"; gene_id "Ledus.S1G120700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12665.t1 is derived from g6287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13757600	13757914	.	+	.	Ledus.S4G182100
Ledus.S4	AUGUSTUS	transcript	13757600	13757914	.	+	.	transcript_id "Ledus.S4G182100.t1"; gene_id "Ledus.S4G182100"
Ledus.S4	AUGUSTUS	start_codon	13757600	13757602	.	+	0	transcript_id "Ledus.S4G182100.t1"; gene_id "Ledus.S4G182100"
Ledus.S4	AUGUSTUS	CDS	13757600	13757914	0.95	+	0	transcript_id "Ledus.S4G182100.t1"; gene_id "Ledus.S4G182100"
Ledus.S4	AUGUSTUS	exon	13757600	13757914	.	+	.	transcript_id "Ledus.S4G182100.t1"; gene_id "Ledus.S4G182100"
Ledus.S4	AUGUSTUS	stop_codon	13757915	13757917	.	+	0	transcript_id "Ledus.S4G182100.t1"; gene_id "Ledus.S4G182100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg493.t1 is derived from g7354.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2884706	2888903	.	+	.	Ledus.S2G037500
Ledus.S2	AUGUSTUS	transcript	2884706	2888903	.	+	.	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	start_codon	2884706	2884708	.	+	0	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	CDS	2884706	2884909	0.97	+	0	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	exon	2884706	2884909	.	+	.	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	intron	2884910	2885133	.	+	.	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	CDS	2885134	2886199	1	+	0	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	exon	2885134	2886199	.	+	.	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	intron	2886200	2886277	.	+	.	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	CDS	2886278	2886381	1	+	2	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	exon	2886278	2886381	.	+	.	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	intron	2886382	2886474	.	+	.	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	CDS	2886475	2886691	1	+	0	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	exon	2886475	2886691	.	+	.	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	intron	2886692	2887027	.	+	.	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	CDS	2887028	2888463	1	+	2	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	exon	2887028	2888463	.	+	.	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	intron	2888464	2888591	.	+	.	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	CDS	2888592	2888903	0.99	+	0	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	exon	2888592	2888903	.	+	.	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	stop_codon	2888904	2888906	.	+	0	transcript_id "Ledus.S2G037500.t1"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	transcript	2884706	2888903	.	+	.	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	start_codon	2884706	2884708	.	+	0	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	CDS	2884706	2884909	0.95	+	0	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	exon	2884706	2884909	.	+	.	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	intron	2884910	2885133	.	+	.	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	CDS	2885134	2886199	1	+	0	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	exon	2885134	2886199	.	+	.	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	intron	2886200	2886277	.	+	.	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	CDS	2886278	2886381	1	+	2	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	exon	2886278	2886381	.	+	.	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	intron	2886382	2886474	.	+	.	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	CDS	2886475	2886691	1	+	0	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	exon	2886475	2886691	.	+	.	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	intron	2886692	2887036	.	+	.	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	CDS	2887037	2888463	1	+	2	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	exon	2887037	2888463	.	+	.	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	intron	2888464	2888591	.	+	.	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	CDS	2888592	2888903	1	+	0	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	exon	2888592	2888903	.	+	.	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
Ledus.S2	AUGUSTUS	stop_codon	2888904	2888906	.	+	0	transcript_id "Ledus.S2G037500.t2"; gene_id "Ledus.S2G037500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10557.t1 is derived from g11587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16135153	16137085	.	+	.	Ledus.S3G203400
Ledus.S3	AUGUSTUS	transcript	16135153	16137085	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	start_codon	16135153	16135155	.	+	0	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	CDS	16135153	16135263	1	+	0	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	exon	16135153	16135263	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	intron	16135264	16135362	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	CDS	16135363	16135477	1	+	0	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	exon	16135363	16135477	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	intron	16135478	16135557	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	CDS	16135558	16135661	1	+	2	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	exon	16135558	16135661	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	intron	16135662	16135752	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	CDS	16135753	16135854	1	+	0	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	exon	16135753	16135854	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	intron	16135855	16135937	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	CDS	16135938	16136096	1	+	0	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	exon	16135938	16136096	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	intron	16136097	16136169	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	CDS	16136170	16136226	1	+	0	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	exon	16136170	16136226	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	intron	16136227	16136336	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	CDS	16136337	16136373	0.98	+	0	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	exon	16136337	16136373	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	intron	16136374	16136483	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	CDS	16136484	16136616	0.44	+	2	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	exon	16136484	16136616	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	intron	16136617	16136701	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	CDS	16136702	16136796	0.65	+	1	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	exon	16136702	16136796	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	intron	16136797	16136891	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	CDS	16136892	16137085	1	+	2	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	exon	16136892	16137085	.	+	.	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
Ledus.S3	AUGUSTUS	stop_codon	16137086	16137088	.	+	0	transcript_id "Ledus.S3G203400.t1"; gene_id "Ledus.S3G203400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9661.t1 is derived from g10691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8858765	8863865	.	+	.	Ledus.S3G113800
Ledus.S3	AUGUSTUS	transcript	8858765	8863865	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	start_codon	8858765	8858767	.	+	0	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8858765	8859777	0.88	+	0	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8858765	8859777	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	intron	8859778	8859917	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8859918	8859988	1	+	1	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8859918	8859988	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	intron	8859989	8860068	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8860069	8860210	1	+	2	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8860069	8860210	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	intron	8860211	8860427	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8860428	8860541	0.98	+	1	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8860428	8860541	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	intron	8860542	8860608	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8860609	8860756	0.97	+	1	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8860609	8860756	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	intron	8860757	8860974	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8860975	8861181	1	+	0	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8860975	8861181	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	intron	8861182	8861376	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8861377	8861625	1	+	0	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8861377	8861625	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	intron	8861626	8861819	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8861820	8862013	0.23	+	0	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8861820	8862013	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	intron	8862014	8862186	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8862187	8862272	0.33	+	1	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8862187	8862272	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	intron	8862273	8862359	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8862360	8862540	0.37	+	2	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8862360	8862540	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	intron	8862541	8862612	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8862613	8862717	0.24	+	1	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8862613	8862717	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	intron	8862718	8862863	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8862864	8863077	0.28	+	1	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8862864	8863077	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	intron	8863078	8863172	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	CDS	8863173	8863865	0.98	+	0	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	exon	8863173	8863865	.	+	.	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
Ledus.S3	AUGUSTUS	stop_codon	8863866	8863868	.	+	0	transcript_id "Ledus.S3G113800.t1"; gene_id "Ledus.S3G113800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2040.t1 is derived from g8903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14292543	14295316	.	+	.	Ledus.S2G192200
Ledus.S2	AUGUSTUS	transcript	14292543	14295316	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	start_codon	14292543	14292545	.	+	0	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	CDS	14292543	14292982	0.52	+	0	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	exon	14292543	14292982	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	intron	14292983	14293068	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	CDS	14293069	14293137	1	+	1	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	exon	14293069	14293137	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	intron	14293138	14293219	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	CDS	14293220	14293355	1	+	1	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	exon	14293220	14293355	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	intron	14293356	14293645	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	CDS	14293646	14293893	1	+	0	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	exon	14293646	14293893	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	intron	14293894	14293977	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	CDS	14293978	14294204	1	+	1	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	exon	14293978	14294204	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	intron	14294205	14294285	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	CDS	14294286	14294401	1	+	2	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	exon	14294286	14294401	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	intron	14294402	14294499	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	CDS	14294500	14294676	1	+	0	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	exon	14294500	14294676	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	intron	14294677	14294768	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	CDS	14294769	14294957	1	+	0	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	exon	14294769	14294957	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	intron	14294958	14295045	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	CDS	14295046	14295108	1	+	0	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	exon	14295046	14295108	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	intron	14295109	14295199	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	CDS	14295200	14295316	1	+	0	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	exon	14295200	14295316	.	+	.	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
Ledus.S2	AUGUSTUS	stop_codon	14295317	14295319	.	+	0	transcript_id "Ledus.S2G192200.t1"; gene_id "Ledus.S2G192200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5417.t1 is derived from g2856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24045113	24048279	.	+	.	Ledus.S1G283800
Ledus.S1	AUGUSTUS	transcript	24045113	24048279	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	start_codon	24045113	24045115	.	+	0	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24045113	24045339	0.7	+	0	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24045113	24045339	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24045340	24045430	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24045431	24045668	0.68	+	1	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24045431	24045668	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24045669	24045806	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24045807	24045974	0.68	+	0	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24045807	24045974	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24045975	24046056	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24046057	24046147	1	+	0	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24046057	24046147	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24046148	24046372	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24046373	24046472	1	+	2	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24046373	24046472	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24046473	24046543	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24046544	24046594	1	+	1	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24046544	24046594	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24046595	24046679	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24046680	24046737	1	+	1	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24046680	24046737	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24046738	24046833	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24046834	24046894	1	+	0	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24046834	24046894	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24046895	24046987	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24046988	24047056	1	+	2	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24046988	24047056	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24047057	24047132	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24047133	24047222	1	+	2	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24047133	24047222	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24047223	24047307	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24047308	24047396	0.95	+	2	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24047308	24047396	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24047397	24047500	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24047501	24047567	0.89	+	0	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24047501	24047567	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24047568	24047671	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24047672	24047714	0.66	+	2	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24047672	24047714	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24047715	24047820	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24047821	24047890	1	+	1	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24047821	24047890	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24047891	24047961	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24047962	24048034	0.94	+	0	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24047962	24048034	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	intron	24048035	24048136	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	CDS	24048137	24048279	0.94	+	2	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	exon	24048137	24048279	.	+	.	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
Ledus.S1	AUGUSTUS	stop_codon	24048280	24048282	.	+	0	transcript_id "Ledus.S1G283800.t1"; gene_id "Ledus.S1G283800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6039.t1 is derived from g3482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28633554	28635086	.	-	.	Ledus.S1G346000
Ledus.S1	AUGUSTUS	transcript	28633554	28635086	.	-	.	transcript_id "Ledus.S1G346000.t1"; gene_id "Ledus.S1G346000"
Ledus.S1	AUGUSTUS	stop_codon	28633551	28633553	.	-	0	transcript_id "Ledus.S1G346000.t1"; gene_id "Ledus.S1G346000"
Ledus.S1	AUGUSTUS	CDS	28633554	28635086	0.36	-	0	transcript_id "Ledus.S1G346000.t1"; gene_id "Ledus.S1G346000"
Ledus.S1	AUGUSTUS	exon	28633554	28635086	.	-	.	transcript_id "Ledus.S1G346000.t1"; gene_id "Ledus.S1G346000"
Ledus.S1	AUGUSTUS	start_codon	28635084	28635086	.	-	0	transcript_id "Ledus.S1G346000.t1"; gene_id "Ledus.S1G346000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5619.t1 is derived from g3058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25415652	25416815	.	+	.	Ledus.S1G304000
Ledus.S1	AUGUSTUS	transcript	25415652	25416815	.	+	.	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	start_codon	25415652	25415654	.	+	0	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	CDS	25415652	25415779	0.94	+	0	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	exon	25415652	25415779	.	+	.	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	intron	25415780	25415869	.	+	.	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	CDS	25415870	25416077	1	+	1	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	exon	25415870	25416077	.	+	.	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	intron	25416078	25416175	.	+	.	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	CDS	25416176	25416386	1	+	0	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	exon	25416176	25416386	.	+	.	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	intron	25416387	25416508	.	+	.	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	CDS	25416509	25416678	1	+	2	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	exon	25416509	25416678	.	+	.	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	intron	25416679	25416770	.	+	.	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	CDS	25416771	25416815	1	+	0	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	exon	25416771	25416815	.	+	.	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
Ledus.S1	AUGUSTUS	stop_codon	25416816	25416818	.	+	0	transcript_id "Ledus.S1G304000.t1"; gene_id "Ledus.S1G304000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg692.t1 is derived from g7553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4203217	4209883	.	+	.	Ledus.S2G057400
Ledus.S2	AUGUSTUS	transcript	4203217	4209883	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	start_codon	4203217	4203219	.	+	0	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4203217	4203248	0.95	+	0	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4203217	4203248	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4203249	4203326	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4203327	4203454	1	+	1	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4203327	4203454	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4203455	4203610	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4203611	4204065	1	+	2	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4203611	4204065	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4204066	4204281	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4204282	4204638	0.64	+	0	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4204282	4204638	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4204639	4204745	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4204746	4204832	1	+	0	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4204746	4204832	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4204833	4204926	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4204927	4207896	0.62	+	0	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4204927	4207896	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4207897	4207985	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4207986	4207993	0.99	+	0	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4207986	4207993	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4207994	4208148	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4208149	4208200	0.98	+	1	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4208149	4208200	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4208201	4208502	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4208503	4208507	0.42	+	0	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4208503	4208507	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4208508	4208612	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4208613	4208765	0.94	+	1	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4208613	4208765	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4208766	4208852	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4208853	4209062	0.81	+	1	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4208853	4209062	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4209063	4209138	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4209139	4209247	1	+	1	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4209139	4209247	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4209248	4209328	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4209329	4209374	1	+	0	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4209329	4209374	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4209375	4209458	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4209459	4209535	1	+	2	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4209459	4209535	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4209536	4209611	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4209612	4209670	1	+	0	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4209612	4209670	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	intron	4209671	4209759	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	CDS	4209760	4209883	1	+	1	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	exon	4209760	4209883	.	+	.	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
Ledus.S2	AUGUSTUS	stop_codon	4209884	4209886	.	+	0	transcript_id "Ledus.S2G057400.t1"; gene_id "Ledus.S2G057400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11069.t1 is derived from g4687.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1599774	1600419	.	-	.	Ledus.S4G022500
Ledus.S4	AUGUSTUS	transcript	1599774	1600419	.	-	.	transcript_id "Ledus.S4G022500.t1"; gene_id "Ledus.S4G022500"
Ledus.S4	AUGUSTUS	stop_codon	1599771	1599773	.	-	0	transcript_id "Ledus.S4G022500.t1"; gene_id "Ledus.S4G022500"
Ledus.S4	AUGUSTUS	CDS	1599774	1599923	0.85	-	0	transcript_id "Ledus.S4G022500.t1"; gene_id "Ledus.S4G022500"
Ledus.S4	AUGUSTUS	exon	1599774	1599923	.	-	.	transcript_id "Ledus.S4G022500.t1"; gene_id "Ledus.S4G022500"
Ledus.S4	AUGUSTUS	intron	1599924	1600080	.	-	.	transcript_id "Ledus.S4G022500.t1"; gene_id "Ledus.S4G022500"
Ledus.S4	AUGUSTUS	CDS	1600081	1600222	0.42	-	1	transcript_id "Ledus.S4G022500.t1"; gene_id "Ledus.S4G022500"
Ledus.S4	AUGUSTUS	exon	1600081	1600222	.	-	.	transcript_id "Ledus.S4G022500.t1"; gene_id "Ledus.S4G022500"
Ledus.S4	AUGUSTUS	intron	1600223	1600372	.	-	.	transcript_id "Ledus.S4G022500.t1"; gene_id "Ledus.S4G022500"
Ledus.S4	AUGUSTUS	CDS	1600373	1600419	0.27	-	0	transcript_id "Ledus.S4G022500.t1"; gene_id "Ledus.S4G022500"
Ledus.S4	AUGUSTUS	exon	1600373	1600419	.	-	.	transcript_id "Ledus.S4G022500.t1"; gene_id "Ledus.S4G022500"
Ledus.S4	AUGUSTUS	start_codon	1600417	1600419	.	-	0	transcript_id "Ledus.S4G022500.t1"; gene_id "Ledus.S4G022500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6774.t1 is derived from g4218.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34038892	34039739	.	+	.	Ledus.S1G419500
Ledus.S1	AUGUSTUS	transcript	34038892	34039739	.	+	.	transcript_id "Ledus.S1G419500.t1"; gene_id "Ledus.S1G419500"
Ledus.S1	AUGUSTUS	start_codon	34038892	34038894	.	+	0	transcript_id "Ledus.S1G419500.t1"; gene_id "Ledus.S1G419500"
Ledus.S1	AUGUSTUS	CDS	34038892	34039062	0.33	+	0	transcript_id "Ledus.S1G419500.t1"; gene_id "Ledus.S1G419500"
Ledus.S1	AUGUSTUS	exon	34038892	34039062	.	+	.	transcript_id "Ledus.S1G419500.t1"; gene_id "Ledus.S1G419500"
Ledus.S1	AUGUSTUS	intron	34039063	34039421	.	+	.	transcript_id "Ledus.S1G419500.t1"; gene_id "Ledus.S1G419500"
Ledus.S1	AUGUSTUS	CDS	34039422	34039739	0.85	+	0	transcript_id "Ledus.S1G419500.t1"; gene_id "Ledus.S1G419500"
Ledus.S1	AUGUSTUS	exon	34039422	34039739	.	+	.	transcript_id "Ledus.S1G419500.t1"; gene_id "Ledus.S1G419500"
Ledus.S1	AUGUSTUS	stop_codon	34039740	34039742	.	+	0	transcript_id "Ledus.S1G419500.t1"; gene_id "Ledus.S1G419500"
# This transcript jg7230.t2 is derived from g11901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7230.t3 is derived from g11901.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7231.t1 is derived from g11902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	177721	177939	.	-	.	Ledus.S5G000900
Ledus.S5	AUGUSTUS	transcript	177721	177939	.	-	.	transcript_id "Ledus.S5G000900.t1"; gene_id "Ledus.S5G000900"
Ledus.S5	AUGUSTUS	stop_codon	177718	177720	.	-	0	transcript_id "Ledus.S5G000900.t1"; gene_id "Ledus.S5G000900"
Ledus.S5	AUGUSTUS	CDS	177721	177939	0.68	-	0	transcript_id "Ledus.S5G000900.t1"; gene_id "Ledus.S5G000900"
Ledus.S5	AUGUSTUS	exon	177721	177939	.	-	.	transcript_id "Ledus.S5G000900.t1"; gene_id "Ledus.S5G000900"
Ledus.S5	AUGUSTUS	start_codon	177937	177939	.	-	0	transcript_id "Ledus.S5G000900.t1"; gene_id "Ledus.S5G000900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1517.t1 is derived from g8378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10662628	10669079	.	+	.	Ledus.S2G139900
Ledus.S2	AUGUSTUS	transcript	10662628	10669079	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	start_codon	10662628	10662630	.	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10662628	10664286	0.49	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10662628	10664286	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10664287	10664458	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10664459	10664650	1	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10664459	10664650	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10664651	10664807	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10664808	10664856	0.97	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10664808	10664856	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10664857	10664972	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10664973	10665105	0.84	+	2	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10664973	10665105	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10665106	10665252	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10665253	10665889	1	+	1	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10665253	10665889	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10665890	10666081	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10666082	10666165	1	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10666082	10666165	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10666166	10666253	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10666254	10666376	1	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10666254	10666376	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10666377	10666521	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10666522	10666591	1	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10666522	10666591	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10666592	10666736	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10666737	10666834	1	+	2	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10666737	10666834	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10666835	10666956	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10666957	10667058	1	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10666957	10667058	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10667059	10667313	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10667314	10667367	1	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10667314	10667367	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10667368	10667502	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10667503	10667646	1	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10667503	10667646	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10667647	10667789	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10667790	10667843	1	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10667790	10667843	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10667844	10667989	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10667990	10668064	1	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10667990	10668064	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10668065	10668206	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10668207	10668290	0.83	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10668207	10668290	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10668291	10668570	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10668571	10668611	0.78	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10668571	10668611	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10668612	10668781	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10668782	10668820	1	+	1	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10668782	10668820	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	intron	10668821	10669030	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	CDS	10669031	10669079	0.91	+	1	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	exon	10669031	10669079	.	+	.	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
Ledus.S2	AUGUSTUS	stop_codon	10669080	10669082	.	+	0	transcript_id "Ledus.S2G139900.t1"; gene_id "Ledus.S2G139900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5259.t1 is derived from g2698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22767744	22768149	.	+	.	Ledus.S1G268000
Ledus.S1	AUGUSTUS	transcript	22767744	22768149	.	+	.	transcript_id "Ledus.S1G268000.t1"; gene_id "Ledus.S1G268000"
Ledus.S1	AUGUSTUS	start_codon	22767744	22767746	.	+	0	transcript_id "Ledus.S1G268000.t1"; gene_id "Ledus.S1G268000"
Ledus.S1	AUGUSTUS	CDS	22767744	22768028	0.57	+	0	transcript_id "Ledus.S1G268000.t1"; gene_id "Ledus.S1G268000"
Ledus.S1	AUGUSTUS	exon	22767744	22768028	.	+	.	transcript_id "Ledus.S1G268000.t1"; gene_id "Ledus.S1G268000"
Ledus.S1	AUGUSTUS	intron	22768029	22768119	.	+	.	transcript_id "Ledus.S1G268000.t1"; gene_id "Ledus.S1G268000"
Ledus.S1	AUGUSTUS	CDS	22768120	22768149	0.84	+	0	transcript_id "Ledus.S1G268000.t1"; gene_id "Ledus.S1G268000"
Ledus.S1	AUGUSTUS	exon	22768120	22768149	.	+	.	transcript_id "Ledus.S1G268000.t1"; gene_id "Ledus.S1G268000"
Ledus.S1	AUGUSTUS	stop_codon	22768150	22768152	.	+	0	transcript_id "Ledus.S1G268000.t1"; gene_id "Ledus.S1G268000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7355.t1 is derived from g12026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1423734	1426162	.	-	.	Ledus.S5G013300
Ledus.S5	AUGUSTUS	transcript	1423734	1426162	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	stop_codon	1423731	1423733	.	-	0	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	CDS	1423734	1423832	0.95	-	0	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	exon	1423734	1423832	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	intron	1423833	1423917	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	CDS	1423918	1424022	1	-	0	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	exon	1423918	1424022	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	intron	1424023	1424106	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	CDS	1424107	1424250	1	-	0	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	exon	1424107	1424250	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	intron	1424251	1424362	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	CDS	1424363	1424444	1	-	1	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	exon	1424363	1424444	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	intron	1424445	1424588	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	CDS	1424589	1424671	1	-	0	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	exon	1424589	1424671	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	intron	1424672	1424786	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	CDS	1424787	1424888	1	-	0	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	exon	1424787	1424888	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	intron	1424889	1425013	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	CDS	1425014	1425052	1	-	0	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	exon	1425014	1425052	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	intron	1425053	1425143	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	CDS	1425144	1425200	1	-	0	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	exon	1425144	1425200	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	intron	1425201	1425343	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	CDS	1425344	1425412	1	-	0	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	exon	1425344	1425412	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	intron	1425413	1425492	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	CDS	1425493	1425603	1	-	0	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	exon	1425493	1425603	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	intron	1425604	1425729	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	CDS	1425730	1425806	1	-	2	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	exon	1425730	1425806	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	intron	1425807	1425909	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	CDS	1425910	1426162	1	-	0	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	exon	1425910	1426162	.	-	.	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
Ledus.S5	AUGUSTUS	start_codon	1426160	1426162	.	-	0	transcript_id "Ledus.S5G013300.t1"; gene_id "Ledus.S5G013300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10278.t1 is derived from g11308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13978412	13979573	.	+	.	Ledus.S3G175500
Ledus.S3	AUGUSTUS	transcript	13978422	13979573	.	+	.	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	start_codon	13978422	13978424	.	+	0	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	CDS	13978422	13978549	0.77	+	0	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	exon	13978422	13978549	.	+	.	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	intron	13978550	13978840	.	+	.	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	CDS	13978841	13978946	1	+	1	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	exon	13978841	13978946	.	+	.	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	intron	13978947	13979114	.	+	.	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	CDS	13979115	13979121	0.79	+	0	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	exon	13979115	13979121	.	+	.	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	intron	13979122	13979203	.	+	.	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	CDS	13979204	13979264	0.55	+	2	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	exon	13979204	13979264	.	+	.	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	intron	13979265	13979503	.	+	.	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	CDS	13979504	13979573	0.8	+	1	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	exon	13979504	13979573	.	+	.	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	stop_codon	13979574	13979576	.	+	0	transcript_id "Ledus.S3G175500.t1"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	transcript	13978412	13979573	.	+	.	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	start_codon	13978412	13978414	.	+	0	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	CDS	13978412	13978507	0.8	+	0	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	exon	13978412	13978507	.	+	.	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	intron	13978508	13978706	.	+	.	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	CDS	13978707	13978741	0.81	+	0	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	exon	13978707	13978741	.	+	.	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	intron	13978742	13978840	.	+	.	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	CDS	13978841	13978946	0.99	+	1	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	exon	13978841	13978946	.	+	.	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	intron	13978947	13979114	.	+	.	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	CDS	13979115	13979121	0.71	+	0	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	exon	13979115	13979121	.	+	.	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	intron	13979122	13979203	.	+	.	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	CDS	13979204	13979264	0.38	+	2	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	exon	13979204	13979264	.	+	.	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	intron	13979265	13979503	.	+	.	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	CDS	13979504	13979573	0.72	+	1	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	exon	13979504	13979573	.	+	.	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
Ledus.S3	AUGUSTUS	stop_codon	13979574	13979576	.	+	0	transcript_id "Ledus.S3G175500.t2"; gene_id "Ledus.S3G175500"
# This transcript jg2022.t2 is derived from g8885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2023.t1 is derived from g8886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14219516	14220897	.	-	.	Ledus.S2G190500
Ledus.S2	AUGUSTUS	transcript	14219516	14220897	.	-	.	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	stop_codon	14219513	14219515	.	-	0	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	CDS	14219516	14219542	1	-	0	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	exon	14219516	14219542	.	-	.	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	intron	14219543	14219829	.	-	.	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	CDS	14219830	14220009	1	-	0	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	exon	14219830	14220009	.	-	.	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	intron	14220010	14220099	.	-	.	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	CDS	14220100	14220212	1	-	2	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	exon	14220100	14220212	.	-	.	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	intron	14220213	14220312	.	-	.	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	CDS	14220313	14220437	1	-	1	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	exon	14220313	14220437	.	-	.	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	intron	14220438	14220601	.	-	.	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	CDS	14220602	14220897	0.64	-	0	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	exon	14220602	14220897	.	-	.	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
Ledus.S2	AUGUSTUS	start_codon	14220895	14220897	.	-	0	transcript_id "Ledus.S2G190500.t1"; gene_id "Ledus.S2G190500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12878.t1 is derived from g4451.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	311969	312474	.	+	.	Ledus.C10G002100
Ledus.C10	AUGUSTUS	transcript	311969	312474	.	+	.	transcript_id "Ledus.C10G002100.t1"; gene_id "Ledus.C10G002100"
Ledus.C10	AUGUSTUS	start_codon	311969	311971	.	+	0	transcript_id "Ledus.C10G002100.t1"; gene_id "Ledus.C10G002100"
Ledus.C10	AUGUSTUS	CDS	311969	312082	0.59	+	0	transcript_id "Ledus.C10G002100.t1"; gene_id "Ledus.C10G002100"
Ledus.C10	AUGUSTUS	exon	311969	312082	.	+	.	transcript_id "Ledus.C10G002100.t1"; gene_id "Ledus.C10G002100"
Ledus.C10	AUGUSTUS	intron	312083	312192	.	+	.	transcript_id "Ledus.C10G002100.t1"; gene_id "Ledus.C10G002100"
Ledus.C10	AUGUSTUS	CDS	312193	312474	0.86	+	0	transcript_id "Ledus.C10G002100.t1"; gene_id "Ledus.C10G002100"
Ledus.C10	AUGUSTUS	exon	312193	312474	.	+	.	transcript_id "Ledus.C10G002100.t1"; gene_id "Ledus.C10G002100"
Ledus.C10	AUGUSTUS	stop_codon	312475	312477	.	+	0	transcript_id "Ledus.C10G002100.t1"; gene_id "Ledus.C10G002100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3328.t1 is derived from g763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7476991	7477260	.	+	.	Ledus.S1G074900
Ledus.S1	AUGUSTUS	transcript	7476991	7477260	.	+	.	transcript_id "Ledus.S1G074900.t1"; gene_id "Ledus.S1G074900"
Ledus.S1	AUGUSTUS	start_codon	7476991	7476993	.	+	0	transcript_id "Ledus.S1G074900.t1"; gene_id "Ledus.S1G074900"
Ledus.S1	AUGUSTUS	CDS	7476991	7477260	1	+	0	transcript_id "Ledus.S1G074900.t1"; gene_id "Ledus.S1G074900"
Ledus.S1	AUGUSTUS	exon	7476991	7477260	.	+	.	transcript_id "Ledus.S1G074900.t1"; gene_id "Ledus.S1G074900"
Ledus.S1	AUGUSTUS	stop_codon	7477261	7477263	.	+	0	transcript_id "Ledus.S1G074900.t1"; gene_id "Ledus.S1G074900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1465.t1 is derived from g8326.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10343034	10343663	.	+	.	Ledus.S2G134700
Ledus.S2	AUGUSTUS	transcript	10343034	10343663	.	+	.	transcript_id "Ledus.S2G134700.t1"; gene_id "Ledus.S2G134700"
Ledus.S2	AUGUSTUS	start_codon	10343034	10343036	.	+	0	transcript_id "Ledus.S2G134700.t1"; gene_id "Ledus.S2G134700"
Ledus.S2	AUGUSTUS	CDS	10343034	10343296	0.91	+	0	transcript_id "Ledus.S2G134700.t1"; gene_id "Ledus.S2G134700"
Ledus.S2	AUGUSTUS	exon	10343034	10343296	.	+	.	transcript_id "Ledus.S2G134700.t1"; gene_id "Ledus.S2G134700"
Ledus.S2	AUGUSTUS	intron	10343297	10343369	.	+	.	transcript_id "Ledus.S2G134700.t1"; gene_id "Ledus.S2G134700"
Ledus.S2	AUGUSTUS	CDS	10343370	10343539	0.92	+	1	transcript_id "Ledus.S2G134700.t1"; gene_id "Ledus.S2G134700"
Ledus.S2	AUGUSTUS	exon	10343370	10343539	.	+	.	transcript_id "Ledus.S2G134700.t1"; gene_id "Ledus.S2G134700"
Ledus.S2	AUGUSTUS	intron	10343540	10343634	.	+	.	transcript_id "Ledus.S2G134700.t1"; gene_id "Ledus.S2G134700"
Ledus.S2	AUGUSTUS	CDS	10343635	10343663	0.99	+	2	transcript_id "Ledus.S2G134700.t1"; gene_id "Ledus.S2G134700"
Ledus.S2	AUGUSTUS	exon	10343635	10343663	.	+	.	transcript_id "Ledus.S2G134700.t1"; gene_id "Ledus.S2G134700"
Ledus.S2	AUGUSTUS	stop_codon	10343664	10343666	.	+	0	transcript_id "Ledus.S2G134700.t1"; gene_id "Ledus.S2G134700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6306.t1 is derived from g3749.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30428433	30430669	.	-	.	Ledus.S1G372700
Ledus.S1	AUGUSTUS	transcript	30428433	30430669	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	stop_codon	30428430	30428432	.	-	0	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	CDS	30428433	30428588	1	-	0	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	exon	30428433	30428588	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	intron	30428589	30428736	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	CDS	30428737	30428811	1	-	0	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	exon	30428737	30428811	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	intron	30428812	30429073	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	CDS	30429074	30429217	1	-	0	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	exon	30429074	30429217	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	intron	30429218	30429334	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	CDS	30429335	30429530	1	-	1	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	exon	30429335	30429530	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	intron	30429531	30429659	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	CDS	30429660	30429886	0.99	-	0	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	exon	30429660	30429886	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	intron	30429887	30430052	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	CDS	30430053	30430101	1	-	1	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	exon	30430053	30430101	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	intron	30430102	30430532	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	CDS	30430533	30430669	1	-	0	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	exon	30430533	30430669	.	-	.	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
Ledus.S1	AUGUSTUS	start_codon	30430667	30430669	.	-	0	transcript_id "Ledus.S1G372700.t1"; gene_id "Ledus.S1G372700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg744.t1 is derived from g7605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4732383	4743706	.	+	.	Ledus.S2G062600
Ledus.S2	AUGUSTUS	transcript	4732383	4743706	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	start_codon	4732383	4732385	.	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4732383	4732424	0.18	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4732383	4732424	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4732425	4732517	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4732518	4734623	0.99	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4732518	4734623	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4734624	4735329	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4735330	4735709	0.99	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4735330	4735709	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4735710	4735840	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4735841	4735998	0.99	+	1	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4735841	4735998	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4735999	4736106	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4736107	4736189	0.99	+	2	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4736107	4736189	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4736190	4736420	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4736421	4736552	1	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4736421	4736552	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4736553	4736651	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4736652	4736768	1	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4736652	4736768	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4736769	4736894	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4736895	4736987	1	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4736895	4736987	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4736988	4737130	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4737131	4737208	1	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4737131	4737208	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4737209	4737289	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4737290	4737346	1	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4737290	4737346	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4737347	4737809	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4737810	4738296	1	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4737810	4738296	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4738297	4738400	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4738401	4738456	1	+	2	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4738401	4738456	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4738457	4738638	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4738639	4738718	1	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4738639	4738718	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4738719	4738846	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4738847	4738932	1	+	1	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4738847	4738932	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4738933	4739079	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4739080	4739159	1	+	2	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4739080	4739159	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4739160	4739345	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4739346	4739425	1	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4739346	4739425	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4739426	4739604	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4739605	4739650	1	+	1	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4739605	4739650	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4739651	4739834	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4739835	4743080	0.99	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4739835	4743080	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4743081	4743260	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4743261	4743299	1	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4743261	4743299	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4743300	4743411	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4743412	4743504	0.53	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4743412	4743504	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	intron	4743505	4743598	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	CDS	4743599	4743706	0.96	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	exon	4743599	4743706	.	+	.	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
Ledus.S2	AUGUSTUS	stop_codon	4743707	4743709	.	+	0	transcript_id "Ledus.S2G062600.t1"; gene_id "Ledus.S2G062600"
# This transcript jg12463.t2 is derived from g6084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12464.t1 is derived from g6085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12111927	12115304	.	+	.	Ledus.S4G162000
Ledus.S4	AUGUSTUS	transcript	12111927	12115304	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	start_codon	12111927	12111929	.	+	0	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	CDS	12111927	12112382	0.54	+	0	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	exon	12111927	12112382	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	intron	12112383	12112825	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	CDS	12112826	12113290	0.88	+	0	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	exon	12112826	12113290	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	intron	12113291	12113391	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	CDS	12113392	12113479	0.85	+	0	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	exon	12113392	12113479	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	intron	12113480	12113600	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	CDS	12113601	12113671	0.79	+	2	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	exon	12113601	12113671	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	intron	12113672	12113761	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	CDS	12113762	12113850	1	+	0	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	exon	12113762	12113850	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	intron	12113851	12113952	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	CDS	12113953	12114085	0.87	+	1	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	exon	12113953	12114085	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	intron	12114086	12114199	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	CDS	12114200	12114429	0.99	+	0	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	exon	12114200	12114429	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	intron	12114430	12114508	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	CDS	12114509	12114988	1	+	1	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	exon	12114509	12114988	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	intron	12114989	12115069	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	CDS	12115070	12115139	0.98	+	1	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	exon	12115070	12115139	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	intron	12115140	12115214	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	CDS	12115215	12115304	0.98	+	0	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	exon	12115215	12115304	.	+	.	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
Ledus.S4	AUGUSTUS	stop_codon	12115305	12115307	.	+	0	transcript_id "Ledus.S4G162000.t1"; gene_id "Ledus.S4G162000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10530.t1 is derived from g11560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15952468	15954468	.	-	.	Ledus.S3G200700
Ledus.S3	AUGUSTUS	transcript	15952468	15954468	.	-	.	transcript_id "Ledus.S3G200700.t1"; gene_id "Ledus.S3G200700"
Ledus.S3	AUGUSTUS	stop_codon	15952465	15952467	.	-	0	transcript_id "Ledus.S3G200700.t1"; gene_id "Ledus.S3G200700"
Ledus.S3	AUGUSTUS	CDS	15952468	15954468	1	-	0	transcript_id "Ledus.S3G200700.t1"; gene_id "Ledus.S3G200700"
Ledus.S3	AUGUSTUS	exon	15952468	15954468	.	-	.	transcript_id "Ledus.S3G200700.t1"; gene_id "Ledus.S3G200700"
Ledus.S3	AUGUSTUS	start_codon	15954466	15954468	.	-	0	transcript_id "Ledus.S3G200700.t1"; gene_id "Ledus.S3G200700"
Ledus.S3	AUGUSTUS	transcript	15953048	15954468	.	-	.	transcript_id "Ledus.S3G200700.t2"; gene_id "Ledus.S3G200700"
Ledus.S3	AUGUSTUS	stop_codon	15953045	15953047	.	-	0	transcript_id "Ledus.S3G200700.t2"; gene_id "Ledus.S3G200700"
Ledus.S3	AUGUSTUS	CDS	15953048	15953049	0.31	-	2	transcript_id "Ledus.S3G200700.t2"; gene_id "Ledus.S3G200700"
Ledus.S3	AUGUSTUS	exon	15953048	15953049	.	-	.	transcript_id "Ledus.S3G200700.t2"; gene_id "Ledus.S3G200700"
Ledus.S3	AUGUSTUS	intron	15953050	15953117	.	-	.	transcript_id "Ledus.S3G200700.t2"; gene_id "Ledus.S3G200700"
Ledus.S3	AUGUSTUS	CDS	15953118	15954468	0.77	-	0	transcript_id "Ledus.S3G200700.t2"; gene_id "Ledus.S3G200700"
Ledus.S3	AUGUSTUS	exon	15953118	15954468	.	-	.	transcript_id "Ledus.S3G200700.t2"; gene_id "Ledus.S3G200700"
Ledus.S3	AUGUSTUS	start_codon	15954466	15954468	.	-	0	transcript_id "Ledus.S3G200700.t2"; gene_id "Ledus.S3G200700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2367.t1 is derived from g9230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17596049	17598406	.	+	.	Ledus.S2G224900
Ledus.S2	AUGUSTUS	transcript	17596049	17598406	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	start_codon	17596049	17596051	.	+	0	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	CDS	17596049	17596137	0.77	+	0	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	exon	17596049	17596137	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	intron	17596138	17596292	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	CDS	17596293	17596362	1	+	1	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	exon	17596293	17596362	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	intron	17596363	17596449	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	CDS	17596450	17596647	0.94	+	0	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	exon	17596450	17596647	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	intron	17596648	17596751	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	CDS	17596752	17596853	1	+	0	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	exon	17596752	17596853	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	intron	17596854	17597023	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	CDS	17597024	17597077	0.99	+	0	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	exon	17597024	17597077	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	intron	17597078	17597190	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	CDS	17597191	17597283	1	+	0	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	exon	17597191	17597283	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	intron	17597284	17597427	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	CDS	17597428	17597520	1	+	0	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	exon	17597428	17597520	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	intron	17597521	17597676	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	CDS	17597677	17597781	1	+	0	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	exon	17597677	17597781	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	intron	17597782	17597881	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	CDS	17597882	17597980	1	+	0	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	exon	17597882	17597980	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	intron	17597981	17598136	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	CDS	17598137	17598406	0.57	+	0	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	exon	17598137	17598406	.	+	.	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
Ledus.S2	AUGUSTUS	stop_codon	17598407	17598409	.	+	0	transcript_id "Ledus.S2G224900.t1"; gene_id "Ledus.S2G224900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11748.t1 is derived from g5367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6551750	6553003	.	+	.	Ledus.S4G090400
Ledus.S4	AUGUSTUS	transcript	6551750	6553003	.	+	.	transcript_id "Ledus.S4G090400.t1"; gene_id "Ledus.S4G090400"
Ledus.S4	AUGUSTUS	start_codon	6551750	6551752	.	+	0	transcript_id "Ledus.S4G090400.t1"; gene_id "Ledus.S4G090400"
Ledus.S4	AUGUSTUS	CDS	6551750	6553003	1	+	0	transcript_id "Ledus.S4G090400.t1"; gene_id "Ledus.S4G090400"
Ledus.S4	AUGUSTUS	exon	6551750	6553003	.	+	.	transcript_id "Ledus.S4G090400.t1"; gene_id "Ledus.S4G090400"
Ledus.S4	AUGUSTUS	stop_codon	6553004	6553006	.	+	0	transcript_id "Ledus.S4G090400.t1"; gene_id "Ledus.S4G090400"
# This transcript jg11102.t2 is derived from g4720.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11103.t1 is derived from g4721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1796694	1799230	.	-	.	Ledus.S4G025900
Ledus.S4	AUGUSTUS	transcript	1796694	1799230	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	stop_codon	1796691	1796693	.	-	0	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1796694	1797104	0.78	-	0	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1796694	1797104	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	intron	1797105	1797212	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1797213	1797299	1	-	0	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1797213	1797299	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	intron	1797300	1797445	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1797446	1797551	1	-	1	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1797446	1797551	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	intron	1797552	1797677	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1797678	1797769	1	-	0	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1797678	1797769	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	intron	1797770	1798066	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1798067	1798156	1	-	0	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1798067	1798156	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	intron	1798157	1798323	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1798324	1798458	1	-	0	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1798324	1798458	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	intron	1798459	1798585	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1798586	1798672	0.98	-	0	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1798586	1798672	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	intron	1798673	1798789	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1798790	1798957	0.98	-	0	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1798790	1798957	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	intron	1798958	1799107	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1799108	1799230	0.67	-	0	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1799108	1799230	.	-	.	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	start_codon	1799228	1799230	.	-	0	transcript_id "Ledus.S4G025900.t1"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	transcript	1798150	1799230	.	-	.	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	stop_codon	1798147	1798149	.	-	0	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1798150	1798152	0.93	-	0	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1798150	1798152	.	-	.	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	intron	1798153	1798323	.	-	.	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1798324	1798458	0.99	-	0	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1798324	1798458	.	-	.	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	intron	1798459	1798585	.	-	.	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1798586	1798672	0.98	-	0	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1798586	1798672	.	-	.	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	intron	1798673	1798789	.	-	.	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1798790	1798957	0.98	-	0	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1798790	1798957	.	-	.	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	intron	1798958	1799107	.	-	.	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	CDS	1799108	1799230	0.58	-	0	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	exon	1799108	1799230	.	-	.	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
Ledus.S4	AUGUSTUS	start_codon	1799228	1799230	.	-	0	transcript_id "Ledus.S4G025900.t2"; gene_id "Ledus.S4G025900"
# This transcript jg5952.t2 is derived from g3395.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5953.t1 is derived from g3396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28030277	28032440	.	+	.	Ledus.S1G337400
Ledus.S1	AUGUSTUS	transcript	28030277	28032440	.	+	.	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	start_codon	28030277	28030279	.	+	0	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	CDS	28030277	28030498	0.88	+	0	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	exon	28030277	28030498	.	+	.	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	intron	28030499	28030573	.	+	.	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	CDS	28030574	28030972	0.76	+	0	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	exon	28030574	28030972	.	+	.	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	intron	28030973	28031180	.	+	.	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	CDS	28031181	28031292	0.99	+	0	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	exon	28031181	28031292	.	+	.	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	intron	28031293	28031730	.	+	.	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	CDS	28031731	28032118	0.4	+	2	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	exon	28031731	28032118	.	+	.	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	intron	28032119	28032340	.	+	.	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	CDS	28032341	28032440	0.62	+	1	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	exon	28032341	28032440	.	+	.	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
Ledus.S1	AUGUSTUS	stop_codon	28032441	28032443	.	+	0	transcript_id "Ledus.S1G337400.t1"; gene_id "Ledus.S1G337400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12414.t1 is derived from g6035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11875451	11875843	.	-	.	Ledus.S4G157000
Ledus.S4	AUGUSTUS	transcript	11875451	11875843	.	-	.	transcript_id "Ledus.S4G157000.t1"; gene_id "Ledus.S4G157000"
Ledus.S4	AUGUSTUS	stop_codon	11875448	11875450	.	-	0	transcript_id "Ledus.S4G157000.t1"; gene_id "Ledus.S4G157000"
Ledus.S4	AUGUSTUS	CDS	11875451	11875843	0.94	-	0	transcript_id "Ledus.S4G157000.t1"; gene_id "Ledus.S4G157000"
Ledus.S4	AUGUSTUS	exon	11875451	11875843	.	-	.	transcript_id "Ledus.S4G157000.t1"; gene_id "Ledus.S4G157000"
Ledus.S4	AUGUSTUS	start_codon	11875841	11875843	.	-	0	transcript_id "Ledus.S4G157000.t1"; gene_id "Ledus.S4G157000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3229.t1 is derived from g664.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7004468	7008391	.	+	.	Ledus.S1G065000
Ledus.S1	AUGUSTUS	transcript	7004468	7008391	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	start_codon	7004468	7004470	.	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7004468	7004797	0.51	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7004468	7004797	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7004798	7004886	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7004887	7005054	1	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7004887	7005054	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7005055	7005127	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7005128	7005211	1	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7005128	7005211	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7005212	7005301	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7005302	7005352	1	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7005302	7005352	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7005353	7005437	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7005438	7005494	1	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7005438	7005494	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7005495	7005591	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7005592	7005674	1	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7005592	7005674	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7005675	7005754	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7005755	7005881	1	+	1	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7005755	7005881	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7005882	7005972	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7005973	7006032	1	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7005973	7006032	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7006033	7006162	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7006163	7006366	1	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7006163	7006366	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7006367	7006437	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7006438	7006524	1	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7006438	7006524	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7006525	7006607	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7006608	7006755	1	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7006608	7006755	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7006756	7006846	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7006847	7006974	1	+	2	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7006847	7006974	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7006975	7007050	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7007051	7007098	1	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7007051	7007098	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7007099	7007180	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7007181	7007320	1	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7007181	7007320	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7007321	7007423	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7007424	7007506	0.99	+	1	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7007424	7007506	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7007507	7007663	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7007664	7007767	1	+	2	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7007664	7007767	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7007768	7007840	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7007841	7007911	1	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7007841	7007911	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7007912	7007994	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7007995	7008391	1	+	1	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7007995	7008391	.	+	.	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	stop_codon	7008392	7008394	.	+	0	transcript_id "Ledus.S1G065000.t1"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	transcript	7004468	7008391	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	start_codon	7004468	7004470	.	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7004468	7004797	0.45	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7004468	7004797	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7004798	7004886	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7004887	7005054	1	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7004887	7005054	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7005055	7005127	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7005128	7005211	1	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7005128	7005211	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7005212	7005301	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7005302	7005352	1	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7005302	7005352	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7005353	7005437	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7005438	7005494	1	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7005438	7005494	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7005495	7005588	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7005589	7005674	1	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7005589	7005674	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7005675	7005754	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7005755	7005881	1	+	1	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7005755	7005881	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7005882	7005972	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7005973	7006032	1	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7005973	7006032	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7006033	7006162	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7006163	7006366	1	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7006163	7006366	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7006367	7006437	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7006438	7006524	1	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7006438	7006524	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7006525	7006607	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7006608	7006755	1	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7006608	7006755	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7006756	7006846	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7006847	7006974	1	+	2	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7006847	7006974	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7006975	7007050	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7007051	7007098	1	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7007051	7007098	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7007099	7007180	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7007181	7007320	1	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7007181	7007320	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7007321	7007423	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7007424	7007506	0.99	+	1	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7007424	7007506	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7007507	7007663	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7007664	7007767	1	+	2	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7007664	7007767	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7007768	7007840	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7007841	7007911	1	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7007841	7007911	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	intron	7007912	7007994	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	CDS	7007995	7008391	0.98	+	1	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	exon	7007995	7008391	.	+	.	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
Ledus.S1	AUGUSTUS	stop_codon	7008392	7008394	.	+	0	transcript_id "Ledus.S1G065000.t2"; gene_id "Ledus.S1G065000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12016.t1 is derived from g5635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8722752	8723491	.	-	.	Ledus.S4G117200
Ledus.S4	AUGUSTUS	transcript	8722752	8723491	.	-	.	transcript_id "Ledus.S4G117200.t1"; gene_id "Ledus.S4G117200"
Ledus.S4	AUGUSTUS	stop_codon	8722749	8722751	.	-	0	transcript_id "Ledus.S4G117200.t1"; gene_id "Ledus.S4G117200"
Ledus.S4	AUGUSTUS	CDS	8722752	8723209	1	-	2	transcript_id "Ledus.S4G117200.t1"; gene_id "Ledus.S4G117200"
Ledus.S4	AUGUSTUS	exon	8722752	8723209	.	-	.	transcript_id "Ledus.S4G117200.t1"; gene_id "Ledus.S4G117200"
Ledus.S4	AUGUSTUS	intron	8723210	8723403	.	-	.	transcript_id "Ledus.S4G117200.t1"; gene_id "Ledus.S4G117200"
Ledus.S4	AUGUSTUS	CDS	8723404	8723491	0.8	-	0	transcript_id "Ledus.S4G117200.t1"; gene_id "Ledus.S4G117200"
Ledus.S4	AUGUSTUS	exon	8723404	8723491	.	-	.	transcript_id "Ledus.S4G117200.t1"; gene_id "Ledus.S4G117200"
Ledus.S4	AUGUSTUS	start_codon	8723489	8723491	.	-	0	transcript_id "Ledus.S4G117200.t1"; gene_id "Ledus.S4G117200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8689.t1 is derived from g9719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1377989	1379042	.	+	.	Ledus.S3G016600
Ledus.S3	AUGUSTUS	transcript	1377989	1379042	.	+	.	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	start_codon	1377989	1377991	.	+	0	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	CDS	1377989	1378045	0.54	+	0	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	exon	1377989	1378045	.	+	.	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	intron	1378046	1378132	.	+	.	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	CDS	1378133	1378273	0.63	+	0	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	exon	1378133	1378273	.	+	.	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	intron	1378274	1378406	.	+	.	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	CDS	1378407	1378558	1	+	0	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	exon	1378407	1378558	.	+	.	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	intron	1378559	1378677	.	+	.	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	CDS	1378678	1378711	1	+	1	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	exon	1378678	1378711	.	+	.	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	intron	1378712	1378820	.	+	.	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	CDS	1378821	1378878	1	+	0	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	exon	1378821	1378878	.	+	.	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	intron	1378879	1378971	.	+	.	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	CDS	1378972	1379042	1	+	2	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	exon	1378972	1379042	.	+	.	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
Ledus.S3	AUGUSTUS	stop_codon	1379043	1379045	.	+	0	transcript_id "Ledus.S3G016600.t1"; gene_id "Ledus.S3G016600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg788.t1 is derived from g7649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5117748	5118686	.	+	.	Ledus.S2G067000
Ledus.S2	AUGUSTUS	transcript	5117748	5118686	.	+	.	transcript_id "Ledus.S2G067000.t1"; gene_id "Ledus.S2G067000"
Ledus.S2	AUGUSTUS	start_codon	5117748	5117750	.	+	0	transcript_id "Ledus.S2G067000.t1"; gene_id "Ledus.S2G067000"
Ledus.S2	AUGUSTUS	CDS	5117748	5118686	0.98	+	0	transcript_id "Ledus.S2G067000.t1"; gene_id "Ledus.S2G067000"
Ledus.S2	AUGUSTUS	exon	5117748	5118686	.	+	.	transcript_id "Ledus.S2G067000.t1"; gene_id "Ledus.S2G067000"
Ledus.S2	AUGUSTUS	stop_codon	5118687	5118689	.	+	0	transcript_id "Ledus.S2G067000.t1"; gene_id "Ledus.S2G067000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10397.t1 is derived from g11427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14793163	14794467	.	+	.	Ledus.S3G187400
Ledus.S3	AUGUSTUS	transcript	14793163	14794467	.	+	.	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	start_codon	14793163	14793165	.	+	0	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	CDS	14793163	14793306	0.45	+	0	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	exon	14793163	14793306	.	+	.	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	intron	14793307	14793432	.	+	.	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	CDS	14793433	14793885	0.49	+	0	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	exon	14793433	14793885	.	+	.	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	intron	14793886	14793992	.	+	.	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	CDS	14793993	14794142	0.86	+	0	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	exon	14793993	14794142	.	+	.	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	intron	14794143	14794245	.	+	.	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	CDS	14794246	14794467	1	+	0	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	exon	14794246	14794467	.	+	.	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	stop_codon	14794468	14794470	.	+	0	transcript_id "Ledus.S3G187400.t1"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	transcript	14793163	14794467	.	+	.	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	start_codon	14793163	14793165	.	+	0	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	CDS	14793163	14793257	0.17	+	0	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	exon	14793163	14793257	.	+	.	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	intron	14793258	14793333	.	+	.	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	CDS	14793334	14793340	0.54	+	1	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	exon	14793334	14793340	.	+	.	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	intron	14793341	14793432	.	+	.	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	CDS	14793433	14793885	0.5	+	0	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	exon	14793433	14793885	.	+	.	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	intron	14793886	14793992	.	+	.	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	CDS	14793993	14794142	0.92	+	0	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	exon	14793993	14794142	.	+	.	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	intron	14794143	14794245	.	+	.	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	CDS	14794246	14794467	1	+	0	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	exon	14794246	14794467	.	+	.	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
Ledus.S3	AUGUSTUS	stop_codon	14794468	14794470	.	+	0	transcript_id "Ledus.S3G187400.t2"; gene_id "Ledus.S3G187400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4083.t1 is derived from g1519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14523115	14524335	.	-	.	Ledus.S1G150400
Ledus.S1	AUGUSTUS	transcript	14523115	14524335	.	-	.	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	stop_codon	14523112	14523114	.	-	0	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	CDS	14523115	14523242	1	-	2	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	exon	14523115	14523242	.	-	.	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	intron	14523243	14523337	.	-	.	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	CDS	14523338	14523433	1	-	2	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	exon	14523338	14523433	.	-	.	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	intron	14523434	14523515	.	-	.	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	CDS	14523516	14523629	1	-	2	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	exon	14523516	14523629	.	-	.	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	intron	14523630	14523791	.	-	.	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	CDS	14523792	14523938	0.96	-	2	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	exon	14523792	14523938	.	-	.	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	intron	14523939	14524047	.	-	.	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	CDS	14524048	14524113	0.96	-	2	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	exon	14524048	14524113	.	-	.	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	intron	14524114	14524187	.	-	.	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	CDS	14524188	14524335	0.83	-	0	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	exon	14524188	14524335	.	-	.	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
Ledus.S1	AUGUSTUS	start_codon	14524333	14524335	.	-	0	transcript_id "Ledus.S1G150400.t1"; gene_id "Ledus.S1G150400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10910.t1 is derived from g4528.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	411122	414679	.	-	.	Ledus.S4G006600
Ledus.S4	AUGUSTUS	transcript	411122	414679	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	stop_codon	411119	411121	.	-	0	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	CDS	411122	411283	0.97	-	0	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	exon	411122	411283	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	intron	411284	411400	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	CDS	411401	411499	0.97	-	0	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	exon	411401	411499	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	intron	411500	411603	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	CDS	411604	411763	0.52	-	1	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	exon	411604	411763	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	intron	411764	411843	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	CDS	411844	411932	1	-	0	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	exon	411844	411932	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	intron	411933	412029	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	CDS	412030	412178	1	-	2	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	exon	412030	412178	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	intron	412179	412278	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	CDS	412279	412381	1	-	0	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	exon	412279	412381	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	intron	412382	412588	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	CDS	412589	412678	1	-	0	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	exon	412589	412678	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	intron	412679	412804	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	CDS	412805	412974	1	-	2	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	exon	412805	412974	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	intron	412975	413051	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	CDS	413052	413231	0.78	-	2	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	exon	413052	413231	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	intron	413232	413380	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	CDS	413381	413418	0.94	-	1	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	exon	413381	413418	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	intron	413419	413606	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	CDS	413607	413646	1	-	2	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	exon	413607	413646	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	intron	413647	413877	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	CDS	413878	414679	0.85	-	0	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	exon	413878	414679	.	-	.	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
Ledus.S4	AUGUSTUS	start_codon	414677	414679	.	-	0	transcript_id "Ledus.S4G006600.t1"; gene_id "Ledus.S4G006600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4944.t1 is derived from g2382.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20820315	20825426	.	+	.	Ledus.S1G236500
Ledus.S1	AUGUSTUS	transcript	20820315	20825426	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	start_codon	20820315	20820317	.	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20820315	20820461	0.78	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20820315	20820461	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20820462	20820724	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20820725	20820873	1	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20820725	20820873	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20820874	20821009	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20821010	20821055	0.64	+	1	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20821010	20821055	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20821056	20821222	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20821223	20821444	1	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20821223	20821444	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20821445	20821613	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20821614	20821709	0.52	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20821614	20821709	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20821710	20821878	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20821879	20822154	1	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20821879	20822154	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20822155	20822298	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20822299	20822502	1	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20822299	20822502	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20822503	20822642	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20822643	20822798	0.73	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20822643	20822798	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20822799	20822901	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20822902	20822994	1	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20822902	20822994	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20822995	20823207	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20823208	20823341	0.94	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20823208	20823341	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20823342	20823524	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20823525	20823684	1	+	1	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20823525	20823684	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20823685	20823781	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20823782	20824055	0.82	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20823782	20824055	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20824056	20824143	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20824144	20824336	1	+	2	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20824144	20824336	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20824337	20824494	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20824495	20824681	0.93	+	1	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20824495	20824681	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20824682	20824797	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20824798	20825001	0.91	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20824798	20825001	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20825002	20825100	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20825101	20825166	1	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20825101	20825166	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20825167	20825279	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20825280	20825426	0.99	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20825280	20825426	.	+	.	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	stop_codon	20825427	20825429	.	+	0	transcript_id "Ledus.S1G236500.t1"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	transcript	20820315	20825426	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	start_codon	20820315	20820317	.	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20820315	20820461	0.8	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20820315	20820461	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20820462	20820724	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20820725	20820873	1	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20820725	20820873	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20820874	20821009	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20821010	20821055	0.5	+	1	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20821010	20821055	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20821056	20821222	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20821223	20821444	1	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20821223	20821444	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20821445	20821613	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20821614	20821709	0.5	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20821614	20821709	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20821710	20821878	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20821879	20822154	1	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20821879	20822154	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20822155	20822298	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20822299	20822502	1	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20822299	20822502	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20822503	20822642	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20822643	20822798	0.76	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20822643	20822798	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20822799	20822901	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20822902	20822994	1	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20822902	20822994	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20822995	20823207	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20823208	20823341	0.98	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20823208	20823341	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20823342	20823524	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20823525	20823684	1	+	1	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20823525	20823684	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20823685	20823781	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20823782	20824055	0.83	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20823782	20824055	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20824056	20824143	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20824144	20824336	1	+	2	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20824144	20824336	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20824337	20824494	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20824495	20824681	0.92	+	1	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20824495	20824681	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20824682	20824797	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20824798	20824926	0.98	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20824798	20824926	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20824927	20825100	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20825101	20825166	0.99	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20825101	20825166	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	intron	20825167	20825279	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	CDS	20825280	20825426	1	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	exon	20825280	20825426	.	+	.	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
Ledus.S1	AUGUSTUS	stop_codon	20825427	20825429	.	+	0	transcript_id "Ledus.S1G236500.t2"; gene_id "Ledus.S1G236500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12583.t1 is derived from g6205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12989630	12989842	.	+	.	Ledus.S4G173900
Ledus.S4	AUGUSTUS	transcript	12989630	12989842	.	+	.	transcript_id "Ledus.S4G173900.t1"; gene_id "Ledus.S4G173900"
Ledus.S4	AUGUSTUS	start_codon	12989630	12989632	.	+	0	transcript_id "Ledus.S4G173900.t1"; gene_id "Ledus.S4G173900"
Ledus.S4	AUGUSTUS	CDS	12989630	12989842	0.63	+	0	transcript_id "Ledus.S4G173900.t1"; gene_id "Ledus.S4G173900"
Ledus.S4	AUGUSTUS	exon	12989630	12989842	.	+	.	transcript_id "Ledus.S4G173900.t1"; gene_id "Ledus.S4G173900"
Ledus.S4	AUGUSTUS	stop_codon	12989843	12989845	.	+	0	transcript_id "Ledus.S4G173900.t1"; gene_id "Ledus.S4G173900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8880.t1 is derived from g9910.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2794415	2796282	.	-	.	Ledus.S3G035700
Ledus.S3	AUGUSTUS	transcript	2794415	2796282	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	stop_codon	2794412	2794414	.	-	0	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2794415	2794504	0.97	-	0	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2794415	2794504	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	intron	2794505	2794596	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2794597	2794703	1	-	2	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2794597	2794703	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	intron	2794704	2794792	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2794793	2795325	1	-	1	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2794793	2795325	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	intron	2795326	2795400	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2795401	2795498	1	-	0	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2795401	2795498	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	intron	2795499	2795581	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2795582	2795704	1	-	0	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2795582	2795704	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	intron	2795705	2795782	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2795783	2795842	1	-	0	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2795783	2795842	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	intron	2795843	2795916	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2795917	2796282	0.58	-	0	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2795917	2796282	.	-	.	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	start_codon	2796280	2796282	.	-	0	transcript_id "Ledus.S3G035700.t1"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	transcript	2794415	2796282	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	stop_codon	2794412	2794414	.	-	0	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2794415	2794534	0.9	-	0	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2794415	2794534	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	intron	2794535	2794596	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2794597	2794703	0.98	-	2	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2794597	2794703	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	intron	2794704	2794792	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2794793	2795325	0.99	-	1	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2794793	2795325	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	intron	2795326	2795400	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2795401	2795498	1	-	0	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2795401	2795498	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	intron	2795499	2795581	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2795582	2795704	1	-	0	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2795582	2795704	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	intron	2795705	2795782	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2795783	2795842	1	-	0	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2795783	2795842	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	intron	2795843	2795916	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	CDS	2795917	2796282	0.64	-	0	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	exon	2795917	2796282	.	-	.	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
Ledus.S3	AUGUSTUS	start_codon	2796280	2796282	.	-	0	transcript_id "Ledus.S3G035700.t2"; gene_id "Ledus.S3G035700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg681.t1 is derived from g7542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4159863	4167741	.	+	.	Ledus.S2G056300
Ledus.S2	AUGUSTUS	transcript	4159863	4167741	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	start_codon	4159863	4159865	.	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4159863	4159898	0.29	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4159863	4159898	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4159899	4160063	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4160064	4160182	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4160064	4160182	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4160183	4160322	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4160323	4160482	1	+	1	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4160323	4160482	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4160483	4160619	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4160620	4160670	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4160620	4160670	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4160671	4160784	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4160785	4160874	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4160785	4160874	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4160875	4161050	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4161051	4161108	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4161051	4161108	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4161109	4161324	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4161325	4161446	1	+	2	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4161325	4161446	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4161447	4161583	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4161584	4161712	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4161584	4161712	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4161713	4161910	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4161911	4161999	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4161911	4161999	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4162000	4162081	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4162082	4162186	1	+	1	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4162082	4162186	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4162187	4162310	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4162311	4162386	1	+	1	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4162311	4162386	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4162387	4162490	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4162491	4162580	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4162491	4162580	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4162581	4162656	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4162657	4162724	0.98	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4162657	4162724	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4162725	4162833	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4162834	4162939	0.99	+	1	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4162834	4162939	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4162940	4163049	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4163050	4163129	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4163050	4163129	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4163130	4163285	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4163286	4163367	1	+	1	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4163286	4163367	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4163368	4163446	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4163447	4163530	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4163447	4163530	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4163531	4163850	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4163851	4163955	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4163851	4163955	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4163956	4164080	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4164081	4164122	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4164081	4164122	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4164123	4164236	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4164237	4164824	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4164237	4164824	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4164825	4164952	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4164953	4165141	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4164953	4165141	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4165142	4165494	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4165495	4165631	0.95	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4165495	4165631	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4165632	4165810	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4165811	4165860	0.88	+	1	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4165811	4165860	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4165861	4166002	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4166003	4166057	1	+	2	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4166003	4166057	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4166058	4166372	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4166373	4166495	1	+	1	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4166373	4166495	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4166496	4166625	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4166626	4166722	1	+	1	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4166626	4166722	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4166723	4166813	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4166814	4166831	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4166814	4166831	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4166832	4167111	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4167112	4167207	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4167112	4167207	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4167208	4167300	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4167301	4167342	0.97	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4167301	4167342	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4167343	4167538	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4167539	4167649	0.94	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4167539	4167649	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4167650	4167738	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4167739	4167741	1	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4167739	4167741	.	+	.	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	stop_codon	4167742	4167744	.	+	0	transcript_id "Ledus.S2G056300.t1"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	transcript	4159863	4167741	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	start_codon	4159863	4159865	.	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4159863	4159898	0.28	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4159863	4159898	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4159899	4160063	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4160064	4160182	1	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4160064	4160182	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4160183	4160322	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4160323	4160482	1	+	1	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4160323	4160482	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4160483	4160619	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4160620	4160681	0.54	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4160620	4160681	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4160682	4160784	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4160785	4160839	0.68	+	1	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4160785	4160839	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4160840	4161050	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4161051	4161108	1	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4161051	4161108	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4161109	4161324	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4161325	4161446	1	+	2	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4161325	4161446	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4161447	4161583	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4161584	4161712	1	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4161584	4161712	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4161713	4161910	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4161911	4161999	1	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4161911	4161999	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4162000	4162081	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4162082	4162186	1	+	1	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4162082	4162186	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4162187	4162310	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4162311	4162386	1	+	1	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4162311	4162386	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4162387	4162490	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4162491	4162580	1	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4162491	4162580	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4162581	4162656	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4162657	4162724	0.99	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4162657	4162724	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4162725	4162833	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4162834	4162939	0.98	+	1	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4162834	4162939	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4162940	4163049	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4163050	4163129	0.99	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4163050	4163129	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4163130	4163285	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4163286	4163367	1	+	1	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4163286	4163367	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4163368	4163446	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4163447	4163530	1	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4163447	4163530	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4163531	4163850	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4163851	4163955	1	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4163851	4163955	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4163956	4164080	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4164081	4164122	1	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4164081	4164122	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4164123	4164236	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4164237	4164824	0.97	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4164237	4164824	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4164825	4164952	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4164953	4165141	1	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4164953	4165141	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4165142	4165494	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4165495	4165631	0.86	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4165495	4165631	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4165632	4165810	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4165811	4165860	0.77	+	1	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4165811	4165860	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4165861	4166002	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4166003	4166057	1	+	2	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4166003	4166057	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4166058	4166372	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4166373	4166495	1	+	1	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4166373	4166495	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4166496	4166625	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4166626	4166722	1	+	1	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4166626	4166722	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4166723	4166813	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4166814	4166831	1	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4166814	4166831	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4166832	4167111	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4167112	4167207	1	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4167112	4167207	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4167208	4167300	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4167301	4167342	0.96	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4167301	4167342	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4167343	4167538	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4167539	4167649	0.95	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4167539	4167649	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	intron	4167650	4167738	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	CDS	4167739	4167741	1	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	exon	4167739	4167741	.	+	.	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
Ledus.S2	AUGUSTUS	stop_codon	4167742	4167744	.	+	0	transcript_id "Ledus.S2G056300.t2"; gene_id "Ledus.S2G056300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11415.t1 is derived from g5033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4131569	4132301	.	-	.	Ledus.S4G057100
Ledus.S4	AUGUSTUS	transcript	4131569	4132301	.	-	.	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	stop_codon	4131566	4131568	.	-	0	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	CDS	4131569	4131700	0.91	-	0	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	exon	4131569	4131700	.	-	.	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	intron	4131701	4131786	.	-	.	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	CDS	4131787	4131906	1	-	0	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	exon	4131787	4131906	.	-	.	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	intron	4131907	4132025	.	-	.	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	CDS	4132026	4132133	1	-	0	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	exon	4132026	4132133	.	-	.	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	intron	4132134	4132232	.	-	.	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	CDS	4132233	4132301	0.59	-	0	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	exon	4132233	4132301	.	-	.	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
Ledus.S4	AUGUSTUS	start_codon	4132299	4132301	.	-	0	transcript_id "Ledus.S4G057100.t1"; gene_id "Ledus.S4G057100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg441.t1 is derived from g7302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2632605	2634730	.	+	.	Ledus.S2G032300
Ledus.S2	AUGUSTUS	transcript	2632605	2634730	.	+	.	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	start_codon	2632605	2632607	.	+	0	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	CDS	2632605	2632679	0.96	+	0	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	exon	2632605	2632679	.	+	.	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	intron	2632680	2632775	.	+	.	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	CDS	2632776	2633121	1	+	0	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	exon	2632776	2633121	.	+	.	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	intron	2633122	2633424	.	+	.	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	CDS	2633425	2633947	0.9	+	2	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	exon	2633425	2633947	.	+	.	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	intron	2633948	2634069	.	+	.	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	CDS	2634070	2634730	0.73	+	1	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	exon	2634070	2634730	.	+	.	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
Ledus.S2	AUGUSTUS	stop_codon	2634731	2634733	.	+	0	transcript_id "Ledus.S2G032300.t1"; gene_id "Ledus.S2G032300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8917.t1 is derived from g9947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3122757	3124242	.	+	.	Ledus.S3G039400
Ledus.S3	AUGUSTUS	transcript	3122757	3124242	.	+	.	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	start_codon	3122757	3122759	.	+	0	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	CDS	3122757	3122944	0.91	+	0	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	exon	3122757	3122944	.	+	.	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	intron	3122945	3123123	.	+	.	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	CDS	3123124	3123284	1	+	1	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	exon	3123124	3123284	.	+	.	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	intron	3123285	3123677	.	+	.	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	CDS	3123678	3123824	1	+	2	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	exon	3123678	3123824	.	+	.	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	intron	3123825	3123985	.	+	.	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	CDS	3123986	3124062	1	+	2	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	exon	3123986	3124062	.	+	.	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	intron	3124063	3124158	.	+	.	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	CDS	3124159	3124242	1	+	0	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	exon	3124159	3124242	.	+	.	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
Ledus.S3	AUGUSTUS	stop_codon	3124243	3124245	.	+	0	transcript_id "Ledus.S3G039400.t1"; gene_id "Ledus.S3G039400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5364.t1 is derived from g2803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23689570	23692452	.	-	.	Ledus.S1G278500
Ledus.S1	AUGUSTUS	transcript	23689570	23692452	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	stop_codon	23689567	23689569	.	-	0	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	CDS	23689570	23689710	0.96	-	0	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	exon	23689570	23689710	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	intron	23689711	23689801	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	CDS	23689802	23690939	1	-	1	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	exon	23689802	23690939	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	intron	23690940	23691023	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	CDS	23691024	23691299	1	-	1	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	exon	23691024	23691299	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	intron	23691300	23691391	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	CDS	23691392	23691654	1	-	0	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	exon	23691392	23691654	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	intron	23691655	23691741	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	CDS	23691742	23691919	1	-	1	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	exon	23691742	23691919	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	intron	23691920	23692012	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	CDS	23692013	23692213	1	-	1	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	exon	23692013	23692213	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	intron	23692214	23692312	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	CDS	23692313	23692452	1	-	0	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	exon	23692313	23692452	.	-	.	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
Ledus.S1	AUGUSTUS	start_codon	23692450	23692452	.	-	0	transcript_id "Ledus.S1G278500.t1"; gene_id "Ledus.S1G278500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8190.t1 is derived from g12861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9757167	9764005	.	+	.	Ledus.S5G096800
Ledus.S5	AUGUSTUS	transcript	9757167	9764005	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	start_codon	9757167	9757169	.	+	0	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9757167	9757245	0.95	+	0	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9757167	9757245	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9757246	9757354	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9757355	9757481	1	+	2	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9757355	9757481	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9757482	9757564	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9757565	9757655	1	+	1	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9757565	9757655	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9757656	9757727	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9757728	9757887	1	+	0	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9757728	9757887	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9757888	9758005	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9758006	9758138	1	+	2	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9758006	9758138	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9758139	9758288	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9758289	9758580	1	+	1	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9758289	9758580	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9758581	9758704	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9758705	9758914	1	+	0	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9758705	9758914	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9758915	9758994	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9758995	9759120	1	+	0	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9758995	9759120	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9759121	9759278	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9759279	9759647	1	+	0	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9759279	9759647	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9759648	9759776	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9759777	9759893	1	+	0	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9759777	9759893	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9759894	9760105	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9760106	9760900	0.98	+	0	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9760106	9760900	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9760901	9760998	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9760999	9761140	1	+	0	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9760999	9761140	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9761141	9761242	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9761243	9762432	0.99	+	2	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9761243	9762432	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9762433	9762612	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9762613	9762822	0.99	+	0	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9762613	9762822	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	intron	9762823	9763015	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	CDS	9763016	9764005	0.9	+	0	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	exon	9763016	9764005	.	+	.	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
Ledus.S5	AUGUSTUS	stop_codon	9764006	9764008	.	+	0	transcript_id "Ledus.S5G096800.t1"; gene_id "Ledus.S5G096800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg2902.t1 is derived from g337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4485133	4493150	.	-	.	Ledus.S1G032300
Ledus.S1	AUGUSTUS	transcript	4488766	4493150	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	stop_codon	4488763	4488765	.	-	0	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4488766	4488779	0.54	-	2	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4488766	4488779	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4488780	4488975	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4488976	4489474	0.96	-	0	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4488976	4489474	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4489475	4489603	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4489604	4489881	0.97	-	2	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4489604	4489881	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4489882	4489962	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4489963	4490216	1	-	1	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4489963	4490216	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4490217	4490363	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4490364	4490585	1	-	1	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4490364	4490585	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4490586	4490723	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4490724	4491541	0.59	-	0	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4490724	4491541	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4491542	4491633	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4491634	4491786	1	-	0	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4491634	4491786	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4491787	4491881	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4491882	4492078	1	-	2	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4491882	4492078	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4492079	4492200	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4492201	4492273	1	-	0	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4492201	4492273	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4492274	4492370	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4492371	4492505	1	-	0	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4492371	4492505	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4492506	4492590	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4492591	4492704	1	-	0	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4492591	4492704	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4492705	4492784	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4492785	4493150	0.98	-	0	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4492785	4493150	.	-	.	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	start_codon	4493148	4493150	.	-	0	transcript_id "Ledus.S1G032300.t1"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	transcript	4485133	4493150	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	stop_codon	4485130	4485132	.	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4485133	4485262	0.97	-	1	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4485133	4485262	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4485263	4485351	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4485352	4485475	1	-	2	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4485352	4485475	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4485476	4485610	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4485611	4486448	0.62	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4485611	4486448	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4486449	4486558	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4486559	4486657	0.6	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4486559	4486657	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4486658	4486747	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4486748	4486891	0.5	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4486748	4486891	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4486892	4487054	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4487055	4487339	1	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4487055	4487339	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4487340	4487447	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4487448	4487960	0.9	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4487448	4487960	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4487961	4488067	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4488068	4488277	0.97	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4488068	4488277	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4488278	4488374	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4488375	4488583	0.85	-	2	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4488375	4488583	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4488584	4488684	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4488685	4488779	0.92	-	1	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4488685	4488779	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4488780	4488914	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4488915	4489474	0.9	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4488915	4489474	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4489475	4489603	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4489604	4489881	0.98	-	2	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4489604	4489881	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4489882	4489962	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4489963	4490216	1	-	1	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4489963	4490216	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4490217	4490363	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4490364	4490585	1	-	1	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4490364	4490585	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4490586	4490723	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4490724	4491541	0.64	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4490724	4491541	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4491542	4491633	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4491634	4491786	1	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4491634	4491786	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4491787	4491881	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4491882	4492078	1	-	2	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4491882	4492078	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4492079	4492200	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4492201	4492273	0.99	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4492201	4492273	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4492274	4492370	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4492371	4492505	1	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4492371	4492505	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4492506	4492590	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4492591	4492704	1	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4492591	4492704	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4492705	4492784	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4492785	4493150	0.98	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4492785	4493150	.	-	.	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	start_codon	4493148	4493150	.	-	0	transcript_id "Ledus.S1G032300.t2"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	transcript	4485133	4488593	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	stop_codon	4485130	4485132	.	-	0	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4485133	4485262	0.97	-	1	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4485133	4485262	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4485263	4485351	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4485352	4485475	1	-	2	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4485352	4485475	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4485476	4485610	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4485611	4486448	0.63	-	0	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4485611	4486448	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4486449	4486558	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4486559	4486657	0.4	-	0	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4486559	4486657	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4486658	4486747	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4486748	4486891	0.4	-	0	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4486748	4486891	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4486892	4487054	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4487055	4487339	1	-	0	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4487055	4487339	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4487340	4487447	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4487448	4487960	0.84	-	0	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4487448	4487960	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4487961	4488067	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4488068	4488277	0.97	-	0	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4488068	4488277	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	intron	4488278	4488374	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	CDS	4488375	4488593	0.39	-	0	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	exon	4488375	4488593	.	-	.	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
Ledus.S1	AUGUSTUS	start_codon	4488591	4488593	.	-	0	transcript_id "Ledus.S1G032300.t3"; gene_id "Ledus.S1G032300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12474.t1 is derived from g6095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12198268	12198630	.	-	.	Ledus.S4G163000
Ledus.S4	AUGUSTUS	transcript	12198268	12198630	.	-	.	transcript_id "Ledus.S4G163000.t1"; gene_id "Ledus.S4G163000"
Ledus.S4	AUGUSTUS	stop_codon	12198265	12198267	.	-	0	transcript_id "Ledus.S4G163000.t1"; gene_id "Ledus.S4G163000"
Ledus.S4	AUGUSTUS	CDS	12198268	12198630	0.71	-	0	transcript_id "Ledus.S4G163000.t1"; gene_id "Ledus.S4G163000"
Ledus.S4	AUGUSTUS	exon	12198268	12198630	.	-	.	transcript_id "Ledus.S4G163000.t1"; gene_id "Ledus.S4G163000"
Ledus.S4	AUGUSTUS	start_codon	12198628	12198630	.	-	0	transcript_id "Ledus.S4G163000.t1"; gene_id "Ledus.S4G163000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4318.t1 is derived from g1754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16193923	16195551	.	+	.	Ledus.S1G173900
Ledus.S1	AUGUSTUS	transcript	16193923	16195551	.	+	.	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	start_codon	16193923	16193925	.	+	0	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	CDS	16193923	16194185	0.99	+	0	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	exon	16193923	16194185	.	+	.	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	intron	16194186	16194275	.	+	.	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	CDS	16194276	16194441	1	+	1	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	exon	16194276	16194441	.	+	.	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	intron	16194442	16194524	.	+	.	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	CDS	16194525	16194604	1	+	0	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	exon	16194525	16194604	.	+	.	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	intron	16194605	16194682	.	+	.	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	CDS	16194683	16195119	1	+	1	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	exon	16194683	16195119	.	+	.	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	intron	16195120	16195234	.	+	.	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	CDS	16195235	16195551	1	+	2	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	exon	16195235	16195551	.	+	.	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
Ledus.S1	AUGUSTUS	stop_codon	16195552	16195554	.	+	0	transcript_id "Ledus.S1G173900.t1"; gene_id "Ledus.S1G173900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6701.t1 is derived from g4144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33412100	33413080	.	-	.	Ledus.S1G412200
Ledus.S1	AUGUSTUS	transcript	33412100	33413080	.	-	.	transcript_id "Ledus.S1G412200.t1"; gene_id "Ledus.S1G412200"
Ledus.S1	AUGUSTUS	stop_codon	33412097	33412099	.	-	0	transcript_id "Ledus.S1G412200.t1"; gene_id "Ledus.S1G412200"
Ledus.S1	AUGUSTUS	CDS	33412100	33413080	0.83	-	0	transcript_id "Ledus.S1G412200.t1"; gene_id "Ledus.S1G412200"
Ledus.S1	AUGUSTUS	exon	33412100	33413080	.	-	.	transcript_id "Ledus.S1G412200.t1"; gene_id "Ledus.S1G412200"
Ledus.S1	AUGUSTUS	start_codon	33413078	33413080	.	-	0	transcript_id "Ledus.S1G412200.t1"; gene_id "Ledus.S1G412200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12618.t1 is derived from g6240.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13247407	13249910	.	+	.	Ledus.S4G177400
Ledus.S4	AUGUSTUS	transcript	13247407	13248678	.	+	.	transcript_id "Ledus.S4G177400.t1"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	start_codon	13247407	13247409	.	+	0	transcript_id "Ledus.S4G177400.t1"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	CDS	13247407	13247466	0.65	+	0	transcript_id "Ledus.S4G177400.t1"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	exon	13247407	13247466	.	+	.	transcript_id "Ledus.S4G177400.t1"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	intron	13247467	13247537	.	+	.	transcript_id "Ledus.S4G177400.t1"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	CDS	13247538	13248502	0.13	+	0	transcript_id "Ledus.S4G177400.t1"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	exon	13247538	13248502	.	+	.	transcript_id "Ledus.S4G177400.t1"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	intron	13248503	13248677	.	+	.	transcript_id "Ledus.S4G177400.t1"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	CDS	13248678	13248678	0.44	+	1	transcript_id "Ledus.S4G177400.t1"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	exon	13248678	13248678	.	+	.	transcript_id "Ledus.S4G177400.t1"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	stop_codon	13248679	13248681	.	+	0	transcript_id "Ledus.S4G177400.t1"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	transcript	13247514	13249910	.	+	.	transcript_id "Ledus.S4G177400.t2"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	start_codon	13247514	13247516	.	+	0	transcript_id "Ledus.S4G177400.t2"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	CDS	13247514	13249910	0.67	+	0	transcript_id "Ledus.S4G177400.t2"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	exon	13247514	13249910	.	+	.	transcript_id "Ledus.S4G177400.t2"; gene_id "Ledus.S4G177400"
Ledus.S4	AUGUSTUS	stop_codon	13249911	13249913	.	+	0	transcript_id "Ledus.S4G177400.t2"; gene_id "Ledus.S4G177400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6307.t1 is derived from g3750.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30431851	30433320	.	-	.	Ledus.S1G372800
Ledus.S1	AUGUSTUS	transcript	30432870	30433320	.	-	.	transcript_id "Ledus.S1G372800.t1"; gene_id "Ledus.S1G372800"
Ledus.S1	AUGUSTUS	stop_codon	30432867	30432869	.	-	0	transcript_id "Ledus.S1G372800.t1"; gene_id "Ledus.S1G372800"
Ledus.S1	AUGUSTUS	CDS	30432870	30432878	0.55	-	0	transcript_id "Ledus.S1G372800.t1"; gene_id "Ledus.S1G372800"
Ledus.S1	AUGUSTUS	exon	30432870	30432878	.	-	.	transcript_id "Ledus.S1G372800.t1"; gene_id "Ledus.S1G372800"
Ledus.S1	AUGUSTUS	intron	30432879	30432948	.	-	.	transcript_id "Ledus.S1G372800.t1"; gene_id "Ledus.S1G372800"
Ledus.S1	AUGUSTUS	CDS	30432949	30433320	0.5	-	0	transcript_id "Ledus.S1G372800.t1"; gene_id "Ledus.S1G372800"
Ledus.S1	AUGUSTUS	exon	30432949	30433320	.	-	.	transcript_id "Ledus.S1G372800.t1"; gene_id "Ledus.S1G372800"
Ledus.S1	AUGUSTUS	start_codon	30433318	30433320	.	-	0	transcript_id "Ledus.S1G372800.t1"; gene_id "Ledus.S1G372800"
Ledus.S1	AUGUSTUS	transcript	30431851	30433320	.	-	.	transcript_id "Ledus.S1G372800.t2"; gene_id "Ledus.S1G372800"
Ledus.S1	AUGUSTUS	stop_codon	30431848	30431850	.	-	0	transcript_id "Ledus.S1G372800.t2"; gene_id "Ledus.S1G372800"
Ledus.S1	AUGUSTUS	CDS	30431851	30433320	1	-	0	transcript_id "Ledus.S1G372800.t2"; gene_id "Ledus.S1G372800"
Ledus.S1	AUGUSTUS	exon	30431851	30433320	.	-	.	transcript_id "Ledus.S1G372800.t2"; gene_id "Ledus.S1G372800"
Ledus.S1	AUGUSTUS	start_codon	30433318	30433320	.	-	0	transcript_id "Ledus.S1G372800.t2"; gene_id "Ledus.S1G372800"
# This transcript jg355.t2 is derived from g7216.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg356.t1 is derived from g7217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1924080	1925407	.	+	.	Ledus.S2G023800
Ledus.S2	AUGUSTUS	transcript	1924080	1925407	.	+	.	transcript_id "Ledus.S2G023800.t1"; gene_id "Ledus.S2G023800"
Ledus.S2	AUGUSTUS	start_codon	1924080	1924082	.	+	0	transcript_id "Ledus.S2G023800.t1"; gene_id "Ledus.S2G023800"
Ledus.S2	AUGUSTUS	CDS	1924080	1924958	0.86	+	0	transcript_id "Ledus.S2G023800.t1"; gene_id "Ledus.S2G023800"
Ledus.S2	AUGUSTUS	exon	1924080	1924958	.	+	.	transcript_id "Ledus.S2G023800.t1"; gene_id "Ledus.S2G023800"
Ledus.S2	AUGUSTUS	intron	1924959	1925320	.	+	.	transcript_id "Ledus.S2G023800.t1"; gene_id "Ledus.S2G023800"
Ledus.S2	AUGUSTUS	CDS	1925321	1925407	0.91	+	0	transcript_id "Ledus.S2G023800.t1"; gene_id "Ledus.S2G023800"
Ledus.S2	AUGUSTUS	exon	1925321	1925407	.	+	.	transcript_id "Ledus.S2G023800.t1"; gene_id "Ledus.S2G023800"
Ledus.S2	AUGUSTUS	stop_codon	1925408	1925410	.	+	0	transcript_id "Ledus.S2G023800.t1"; gene_id "Ledus.S2G023800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12276.t1 is derived from g5896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10817043	10819214	.	+	.	Ledus.S4G143200
Ledus.S4	AUGUSTUS	transcript	10817043	10819214	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	start_codon	10817043	10817045	.	+	0	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	CDS	10817043	10817168	0.56	+	0	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	exon	10817043	10817168	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	intron	10817169	10817268	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	CDS	10817269	10817505	0.95	+	0	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	exon	10817269	10817505	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	intron	10817506	10817627	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	CDS	10817628	10817740	0.98	+	0	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	exon	10817628	10817740	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	intron	10817741	10817844	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	CDS	10817845	10818090	0.98	+	1	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	exon	10817845	10818090	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	intron	10818091	10818165	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	CDS	10818166	10818289	1	+	1	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	exon	10818166	10818289	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	intron	10818290	10818382	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	CDS	10818383	10818575	1	+	0	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	exon	10818383	10818575	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	intron	10818576	10818669	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	CDS	10818670	10819214	0.65	+	2	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	exon	10818670	10819214	.	+	.	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	stop_codon	10819215	10819217	.	+	0	transcript_id "Ledus.S4G143200.t1"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	transcript	10818362	10819214	.	+	.	transcript_id "Ledus.S4G143200.t2"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	start_codon	10818362	10818364	.	+	0	transcript_id "Ledus.S4G143200.t2"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	CDS	10818362	10818575	0.64	+	0	transcript_id "Ledus.S4G143200.t2"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	exon	10818362	10818575	.	+	.	transcript_id "Ledus.S4G143200.t2"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	intron	10818576	10818669	.	+	.	transcript_id "Ledus.S4G143200.t2"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	CDS	10818670	10819214	0.76	+	2	transcript_id "Ledus.S4G143200.t2"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	exon	10818670	10819214	.	+	.	transcript_id "Ledus.S4G143200.t2"; gene_id "Ledus.S4G143200"
Ledus.S4	AUGUSTUS	stop_codon	10819215	10819217	.	+	0	transcript_id "Ledus.S4G143200.t2"; gene_id "Ledus.S4G143200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4247.t1 is derived from g1683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15752348	15754423	.	-	.	Ledus.S1G166800
Ledus.S1	AUGUSTUS	transcript	15752348	15754423	.	-	.	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	stop_codon	15752345	15752347	.	-	0	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	CDS	15752348	15752917	1	-	0	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	exon	15752348	15752917	.	-	.	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	intron	15752918	15753030	.	-	.	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	CDS	15753031	15753107	1	-	2	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	exon	15753031	15753107	.	-	.	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	intron	15753108	15753240	.	-	.	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	CDS	15753241	15753264	1	-	2	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	exon	15753241	15753264	.	-	.	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	intron	15753265	15753500	.	-	.	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	CDS	15753501	15753674	1	-	2	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	exon	15753501	15753674	.	-	.	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	intron	15753675	15754029	.	-	.	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	CDS	15754030	15754423	0.61	-	0	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	exon	15754030	15754423	.	-	.	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	start_codon	15754421	15754423	.	-	0	transcript_id "Ledus.S1G166800.t1"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	transcript	15752348	15754423	.	-	.	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	stop_codon	15752345	15752347	.	-	0	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	CDS	15752348	15752917	0.96	-	0	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	exon	15752348	15752917	.	-	.	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	intron	15752918	15753030	.	-	.	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	CDS	15753031	15753107	1	-	2	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	exon	15753031	15753107	.	-	.	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	intron	15753108	15753240	.	-	.	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	CDS	15753241	15753264	1	-	2	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	exon	15753241	15753264	.	-	.	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	intron	15753265	15753500	.	-	.	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	CDS	15753501	15753674	0.97	-	2	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	exon	15753501	15753674	.	-	.	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	intron	15753675	15753810	.	-	.	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	CDS	15753811	15754423	0.44	-	0	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	exon	15753811	15754423	.	-	.	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
Ledus.S1	AUGUSTUS	start_codon	15754421	15754423	.	-	0	transcript_id "Ledus.S1G166800.t2"; gene_id "Ledus.S1G166800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5214.t1 is derived from g2653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22497141	22497626	.	-	.	Ledus.S1G263500
Ledus.S1	AUGUSTUS	transcript	22497141	22497626	.	-	.	transcript_id "Ledus.S1G263500.t1"; gene_id "Ledus.S1G263500"
Ledus.S1	AUGUSTUS	stop_codon	22497138	22497140	.	-	0	transcript_id "Ledus.S1G263500.t1"; gene_id "Ledus.S1G263500"
Ledus.S1	AUGUSTUS	CDS	22497141	22497224	0.82	-	0	transcript_id "Ledus.S1G263500.t1"; gene_id "Ledus.S1G263500"
Ledus.S1	AUGUSTUS	exon	22497141	22497224	.	-	.	transcript_id "Ledus.S1G263500.t1"; gene_id "Ledus.S1G263500"
Ledus.S1	AUGUSTUS	intron	22497225	22497293	.	-	.	transcript_id "Ledus.S1G263500.t1"; gene_id "Ledus.S1G263500"
Ledus.S1	AUGUSTUS	CDS	22497294	22497493	1	-	2	transcript_id "Ledus.S1G263500.t1"; gene_id "Ledus.S1G263500"
Ledus.S1	AUGUSTUS	exon	22497294	22497493	.	-	.	transcript_id "Ledus.S1G263500.t1"; gene_id "Ledus.S1G263500"
Ledus.S1	AUGUSTUS	intron	22497494	22497574	.	-	.	transcript_id "Ledus.S1G263500.t1"; gene_id "Ledus.S1G263500"
Ledus.S1	AUGUSTUS	CDS	22497575	22497626	0.59	-	0	transcript_id "Ledus.S1G263500.t1"; gene_id "Ledus.S1G263500"
Ledus.S1	AUGUSTUS	exon	22497575	22497626	.	-	.	transcript_id "Ledus.S1G263500.t1"; gene_id "Ledus.S1G263500"
Ledus.S1	AUGUSTUS	start_codon	22497624	22497626	.	-	0	transcript_id "Ledus.S1G263500.t1"; gene_id "Ledus.S1G263500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8109.t1 is derived from g12780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9168216	9169188	.	+	.	Ledus.S5G088700
Ledus.S5	AUGUSTUS	transcript	9168216	9169188	.	+	.	transcript_id "Ledus.S5G088700.t1"; gene_id "Ledus.S5G088700"
Ledus.S5	AUGUSTUS	start_codon	9168216	9168218	.	+	0	transcript_id "Ledus.S5G088700.t1"; gene_id "Ledus.S5G088700"
Ledus.S5	AUGUSTUS	CDS	9168216	9168709	0.65	+	0	transcript_id "Ledus.S5G088700.t1"; gene_id "Ledus.S5G088700"
Ledus.S5	AUGUSTUS	exon	9168216	9168709	.	+	.	transcript_id "Ledus.S5G088700.t1"; gene_id "Ledus.S5G088700"
Ledus.S5	AUGUSTUS	intron	9168710	9168818	.	+	.	transcript_id "Ledus.S5G088700.t1"; gene_id "Ledus.S5G088700"
Ledus.S5	AUGUSTUS	CDS	9168819	9169188	0.59	+	1	transcript_id "Ledus.S5G088700.t1"; gene_id "Ledus.S5G088700"
Ledus.S5	AUGUSTUS	exon	9168819	9169188	.	+	.	transcript_id "Ledus.S5G088700.t1"; gene_id "Ledus.S5G088700"
Ledus.S5	AUGUSTUS	stop_codon	9169189	9169191	.	+	0	transcript_id "Ledus.S5G088700.t1"; gene_id "Ledus.S5G088700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7100.t1 is derived from g6631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1541903	1545445	.	-	.	Ledus.C7G016100
Ledus.C7	AUGUSTUS	transcript	1541903	1545445	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	stop_codon	1541900	1541902	.	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1541903	1541953	0.82	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1541903	1541953	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1541954	1542054	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1542055	1542144	0.84	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1542055	1542144	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1542145	1542227	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1542228	1542413	1	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1542228	1542413	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1542414	1542498	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1542499	1542621	1	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1542499	1542621	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1542622	1542698	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1542699	1542821	1	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1542699	1542821	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1542822	1542918	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1542919	1543080	1	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1542919	1543080	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1543081	1543177	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1543178	1543325	1	-	1	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1543178	1543325	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1543326	1543429	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1543430	1543527	1	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1543430	1543527	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1543528	1543633	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1543634	1543813	1	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1543634	1543813	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1543814	1543896	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1543897	1543983	1	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1543897	1543983	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1543984	1544087	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1544088	1544193	0.99	-	1	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1544088	1544193	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1544194	1544285	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1544286	1544388	1	-	2	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1544286	1544388	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1544389	1544461	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1544462	1544593	1	-	2	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1544462	1544593	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1544594	1544683	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1544684	1544909	1	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1544684	1544909	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1544910	1545000	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1545001	1545081	0.7	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1545001	1545081	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	intron	1545082	1545193	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	CDS	1545194	1545445	0.67	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	exon	1545194	1545445	.	-	.	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
Ledus.C7	AUGUSTUS	start_codon	1545443	1545445	.	-	0	transcript_id "Ledus.C7G016100.t1"; gene_id "Ledus.C7G016100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4833.t1 is derived from g2271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20060259	20062052	.	-	.	Ledus.S1G225400
Ledus.S1	AUGUSTUS	transcript	20060259	20062052	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	stop_codon	20060256	20060258	.	-	0	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	CDS	20060259	20060454	1	-	1	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	exon	20060259	20060454	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	intron	20060455	20060548	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	CDS	20060549	20060681	1	-	2	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	exon	20060549	20060681	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	intron	20060682	20060771	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	CDS	20060772	20060888	1	-	2	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	exon	20060772	20060888	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	intron	20060889	20061004	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	CDS	20061005	20061101	1	-	0	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	exon	20061005	20061101	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	intron	20061102	20061199	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	CDS	20061200	20061307	0.99	-	0	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	exon	20061200	20061307	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	intron	20061308	20061419	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	CDS	20061420	20061566	0.98	-	0	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	exon	20061420	20061566	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	intron	20061567	20061713	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	CDS	20061714	20061816	0.99	-	1	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	exon	20061714	20061816	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	intron	20061817	20061957	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	CDS	20061958	20062052	0.89	-	0	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	exon	20061958	20062052	.	-	.	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
Ledus.S1	AUGUSTUS	start_codon	20062050	20062052	.	-	0	transcript_id "Ledus.S1G225400.t1"; gene_id "Ledus.S1G225400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg94.t1 is derived from g9507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	393915	397193	.	-	.	Ledus.C8G005400
Ledus.C8	AUGUSTUS	transcript	393915	397193	.	-	.	transcript_id "Ledus.C8G005400.t1"; gene_id "Ledus.C8G005400"
Ledus.C8	AUGUSTUS	stop_codon	393912	393914	.	-	0	transcript_id "Ledus.C8G005400.t1"; gene_id "Ledus.C8G005400"
Ledus.C8	AUGUSTUS	CDS	393915	397193	0.76	-	0	transcript_id "Ledus.C8G005400.t1"; gene_id "Ledus.C8G005400"
Ledus.C8	AUGUSTUS	exon	393915	397193	.	-	.	transcript_id "Ledus.C8G005400.t1"; gene_id "Ledus.C8G005400"
Ledus.C8	AUGUSTUS	start_codon	397191	397193	.	-	0	transcript_id "Ledus.C8G005400.t1"; gene_id "Ledus.C8G005400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12089.t1 is derived from g5708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9464829	9465350	.	+	.	Ledus.S4G124500
Ledus.S4	AUGUSTUS	transcript	9464829	9465350	.	+	.	transcript_id "Ledus.S4G124500.t1"; gene_id "Ledus.S4G124500"
Ledus.S4	AUGUSTUS	start_codon	9464829	9464831	.	+	0	transcript_id "Ledus.S4G124500.t1"; gene_id "Ledus.S4G124500"
Ledus.S4	AUGUSTUS	CDS	9464829	9464927	0.95	+	0	transcript_id "Ledus.S4G124500.t1"; gene_id "Ledus.S4G124500"
Ledus.S4	AUGUSTUS	exon	9464829	9464927	.	+	.	transcript_id "Ledus.S4G124500.t1"; gene_id "Ledus.S4G124500"
Ledus.S4	AUGUSTUS	intron	9464928	9465092	.	+	.	transcript_id "Ledus.S4G124500.t1"; gene_id "Ledus.S4G124500"
Ledus.S4	AUGUSTUS	CDS	9465093	9465350	0.98	+	0	transcript_id "Ledus.S4G124500.t1"; gene_id "Ledus.S4G124500"
Ledus.S4	AUGUSTUS	exon	9465093	9465350	.	+	.	transcript_id "Ledus.S4G124500.t1"; gene_id "Ledus.S4G124500"
Ledus.S4	AUGUSTUS	stop_codon	9465351	9465353	.	+	0	transcript_id "Ledus.S4G124500.t1"; gene_id "Ledus.S4G124500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5897.t1 is derived from g3340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27685612	27687182	.	-	.	Ledus.S1G331800
Ledus.S1	AUGUSTUS	transcript	27685612	27687182	.	-	.	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	stop_codon	27685609	27685611	.	-	0	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	CDS	27685612	27685680	1	-	0	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	exon	27685612	27685680	.	-	.	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	intron	27685681	27685844	.	-	.	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	CDS	27685845	27685961	1	-	0	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	exon	27685845	27685961	.	-	.	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	intron	27685962	27686249	.	-	.	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	CDS	27686250	27686318	0.88	-	0	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	exon	27686250	27686318	.	-	.	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	intron	27686319	27686738	.	-	.	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	CDS	27686739	27687182	0.31	-	0	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	exon	27686739	27687182	.	-	.	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	start_codon	27687180	27687182	.	-	0	transcript_id "Ledus.S1G331800.t1"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	transcript	27685612	27687182	.	-	.	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	stop_codon	27685609	27685611	.	-	0	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	CDS	27685612	27685670	0.55	-	2	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	exon	27685612	27685670	.	-	.	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	intron	27685671	27685844	.	-	.	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	CDS	27685845	27685961	0.55	-	2	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	exon	27685845	27685961	.	-	.	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	intron	27685962	27686249	.	-	.	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	CDS	27686250	27686318	0.43	-	2	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	exon	27686250	27686318	.	-	.	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	intron	27686319	27686560	.	-	.	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	CDS	27686561	27687182	0.31	-	0	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	exon	27686561	27687182	.	-	.	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
Ledus.S1	AUGUSTUS	start_codon	27687180	27687182	.	-	0	transcript_id "Ledus.S1G331800.t2"; gene_id "Ledus.S1G331800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7247.t1 is derived from g11918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	310678	311175	.	+	.	Ledus.S5G002500
Ledus.S5	AUGUSTUS	transcript	310678	311175	.	+	.	transcript_id "Ledus.S5G002500.t1"; gene_id "Ledus.S5G002500"
Ledus.S5	AUGUSTUS	start_codon	310678	310680	.	+	0	transcript_id "Ledus.S5G002500.t1"; gene_id "Ledus.S5G002500"
Ledus.S5	AUGUSTUS	CDS	310678	311175	0.75	+	0	transcript_id "Ledus.S5G002500.t1"; gene_id "Ledus.S5G002500"
Ledus.S5	AUGUSTUS	exon	310678	311175	.	+	.	transcript_id "Ledus.S5G002500.t1"; gene_id "Ledus.S5G002500"
Ledus.S5	AUGUSTUS	stop_codon	311176	311178	.	+	0	transcript_id "Ledus.S5G002500.t1"; gene_id "Ledus.S5G002500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7003.t1 is derived from g6534.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	747541	750289	.	-	.	Ledus.C7G006400
Ledus.C7	AUGUSTUS	transcript	747541	750289	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	stop_codon	747538	747540	.	-	0	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	CDS	747541	747660	0.45	-	0	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	exon	747541	747660	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	intron	747661	747772	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	CDS	747773	747833	0.52	-	1	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	exon	747773	747833	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	intron	747834	747916	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	CDS	747917	748076	0.73	-	2	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	exon	747917	748076	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	intron	748077	748169	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	CDS	748170	749009	0.98	-	2	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	exon	748170	749009	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	intron	749010	749328	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	CDS	749329	749548	1	-	0	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	exon	749329	749548	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	intron	749549	749681	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	CDS	749682	749929	1	-	2	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	exon	749682	749929	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	intron	749930	750065	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	CDS	750066	750108	0.92	-	0	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	exon	750066	750108	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	intron	750109	750187	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	CDS	750188	750289	0.88	-	0	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	exon	750188	750289	.	-	.	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
Ledus.C7	AUGUSTUS	start_codon	750287	750289	.	-	0	transcript_id "Ledus.C7G006400.t1"; gene_id "Ledus.C7G006400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10914.t1 is derived from g4532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	536805	537260	.	-	.	Ledus.S4G007000
Ledus.S4	AUGUSTUS	transcript	536805	537260	.	-	.	transcript_id "Ledus.S4G007000.t1"; gene_id "Ledus.S4G007000"
Ledus.S4	AUGUSTUS	stop_codon	536802	536804	.	-	0	transcript_id "Ledus.S4G007000.t1"; gene_id "Ledus.S4G007000"
Ledus.S4	AUGUSTUS	CDS	536805	537260	0.46	-	0	transcript_id "Ledus.S4G007000.t1"; gene_id "Ledus.S4G007000"
Ledus.S4	AUGUSTUS	exon	536805	537260	.	-	.	transcript_id "Ledus.S4G007000.t1"; gene_id "Ledus.S4G007000"
Ledus.S4	AUGUSTUS	start_codon	537258	537260	.	-	0	transcript_id "Ledus.S4G007000.t1"; gene_id "Ledus.S4G007000"
# This transcript jg1243.t2 is derived from g8104.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1244.t1 is derived from g8105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8822998	8829322	.	-	.	Ledus.S2G112600
Ledus.S2	AUGUSTUS	transcript	8822998	8829322	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	stop_codon	8822995	8822997	.	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8822998	8823069	0.98	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8822998	8823069	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8823070	8823173	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8823174	8823251	1	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8823174	8823251	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8823252	8823335	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8823336	8823512	1	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8823336	8823512	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8823513	8823624	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8823625	8823681	1	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8823625	8823681	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8823682	8823772	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8823773	8823824	1	-	1	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8823773	8823824	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8823825	8823951	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8823952	8824040	1	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8823952	8824040	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8824041	8824388	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8824389	8824474	1	-	2	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8824389	8824474	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8824475	8824902	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8824903	8825116	1	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8824903	8825116	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8825117	8825288	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8825289	8825381	1	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8825289	8825381	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8825382	8825559	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8825560	8825700	1	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8825560	8825700	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8825701	8825908	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8825909	8826001	1	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8825909	8826001	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8826002	8826241	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8826242	8826470	1	-	1	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8826242	8826470	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8826471	8826691	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8826692	8826718	1	-	1	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8826692	8826718	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8826719	8826860	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8826861	8827033	1	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8826861	8827033	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8827034	8827171	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8827172	8828467	0.96	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8827172	8828467	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8828468	8828634	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8828635	8828811	1	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8828635	8828811	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	intron	8828812	8829031	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	CDS	8829032	8829322	0.59	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	exon	8829032	8829322	.	-	.	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
Ledus.S2	AUGUSTUS	start_codon	8829320	8829322	.	-	0	transcript_id "Ledus.S2G112600.t1"; gene_id "Ledus.S2G112600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg781.t1 is derived from g7642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5065657	5068431	.	-	.	Ledus.S2G066300
Ledus.S2	AUGUSTUS	transcript	5065657	5068431	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	stop_codon	5065654	5065656	.	-	0	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	CDS	5065657	5065742	0.6	-	2	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	exon	5065657	5065742	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	intron	5065743	5066087	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	CDS	5066088	5066130	0.25	-	0	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	exon	5066088	5066130	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	intron	5066131	5066408	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	CDS	5066409	5066519	0.36	-	0	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	exon	5066409	5066519	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	intron	5066520	5066608	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	CDS	5066609	5066797	1	-	0	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	exon	5066609	5066797	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	intron	5066798	5066896	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	CDS	5066897	5066949	1	-	2	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	exon	5066897	5066949	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	intron	5066950	5067112	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	CDS	5067113	5067242	1	-	0	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	exon	5067113	5067242	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	intron	5067243	5067552	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	CDS	5067553	5067630	1	-	0	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	exon	5067553	5067630	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	intron	5067631	5067717	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	CDS	5067718	5067777	1	-	0	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	exon	5067718	5067777	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	intron	5067778	5067876	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	CDS	5067877	5067929	0.96	-	2	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	exon	5067877	5067929	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	intron	5067930	5068055	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	CDS	5068056	5068431	0.96	-	0	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	exon	5068056	5068431	.	-	.	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
Ledus.S2	AUGUSTUS	start_codon	5068429	5068431	.	-	0	transcript_id "Ledus.S2G066300.t1"; gene_id "Ledus.S2G066300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12285.t1 is derived from g5905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10891959	10892543	.	-	.	Ledus.S4G144100
Ledus.S4	AUGUSTUS	transcript	10891959	10892543	.	-	.	transcript_id "Ledus.S4G144100.t1"; gene_id "Ledus.S4G144100"
Ledus.S4	AUGUSTUS	stop_codon	10891956	10891958	.	-	0	transcript_id "Ledus.S4G144100.t1"; gene_id "Ledus.S4G144100"
Ledus.S4	AUGUSTUS	CDS	10891959	10892543	0.9	-	0	transcript_id "Ledus.S4G144100.t1"; gene_id "Ledus.S4G144100"
Ledus.S4	AUGUSTUS	exon	10891959	10892543	.	-	.	transcript_id "Ledus.S4G144100.t1"; gene_id "Ledus.S4G144100"
Ledus.S4	AUGUSTUS	start_codon	10892541	10892543	.	-	0	transcript_id "Ledus.S4G144100.t1"; gene_id "Ledus.S4G144100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12931.t1 is derived from g4423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	403116	404573	.	+	.	Ledus.C9G003900
Ledus.C9	AUGUSTUS	transcript	403116	404573	.	+	.	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	start_codon	403116	403118	.	+	0	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	CDS	403116	403225	0.72	+	0	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	exon	403116	403225	.	+	.	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	intron	403226	403333	.	+	.	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	CDS	403334	403436	1	+	1	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	exon	403334	403436	.	+	.	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	intron	403437	403873	.	+	.	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	CDS	403874	403937	1	+	0	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	exon	403874	403937	.	+	.	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	intron	403938	404143	.	+	.	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	CDS	404144	404232	1	+	2	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	exon	404144	404232	.	+	.	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	intron	404233	404480	.	+	.	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	CDS	404481	404573	1	+	0	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	exon	404481	404573	.	+	.	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	stop_codon	404574	404576	.	+	0	transcript_id "Ledus.C9G003900.t1"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	transcript	403116	404573	.	+	.	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	start_codon	403116	403118	.	+	0	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	CDS	403116	403225	0.7	+	0	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	exon	403116	403225	.	+	.	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	intron	403226	403333	.	+	.	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	CDS	403334	403457	0.38	+	1	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	exon	403334	403457	.	+	.	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	intron	403458	403776	.	+	.	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	CDS	403777	403788	0.69	+	0	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	exon	403777	403788	.	+	.	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	intron	403789	403873	.	+	.	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	CDS	403874	403937	1	+	0	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	exon	403874	403937	.	+	.	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	intron	403938	404143	.	+	.	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	CDS	404144	404232	1	+	2	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	exon	404144	404232	.	+	.	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	intron	404233	404480	.	+	.	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	CDS	404481	404573	0.96	+	0	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	exon	404481	404573	.	+	.	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
Ledus.C9	AUGUSTUS	stop_codon	404574	404576	.	+	0	transcript_id "Ledus.C9G003900.t2"; gene_id "Ledus.C9G003900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4140.t1 is derived from g1576.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14917288	14918565	.	-	.	Ledus.S1G156100
Ledus.S1	AUGUSTUS	transcript	14917288	14918565	.	-	.	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	stop_codon	14917285	14917287	.	-	0	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	CDS	14917288	14917554	0.68	-	0	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	exon	14917288	14917554	.	-	.	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	intron	14917555	14917637	.	-	.	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	CDS	14917638	14917883	1	-	0	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	exon	14917638	14917883	.	-	.	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	intron	14917884	14918040	.	-	.	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	CDS	14918041	14918139	1	-	0	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	exon	14918041	14918139	.	-	.	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	intron	14918140	14918239	.	-	.	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	CDS	14918240	14918416	1	-	0	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	exon	14918240	14918416	.	-	.	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	intron	14918417	14918493	.	-	.	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	CDS	14918494	14918565	1	-	0	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	exon	14918494	14918565	.	-	.	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
Ledus.S1	AUGUSTUS	start_codon	14918563	14918565	.	-	0	transcript_id "Ledus.S1G156100.t1"; gene_id "Ledus.S1G156100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8007.t1 is derived from g12678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8460871	8463437	.	-	.	Ledus.S5G078500
Ledus.S5	AUGUSTUS	transcript	8460871	8463437	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	stop_codon	8460868	8460870	.	-	0	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	CDS	8460871	8461262	0.7	-	2	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	exon	8460871	8461262	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	intron	8461263	8461353	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	CDS	8461354	8461620	1	-	2	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	exon	8461354	8461620	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	intron	8461621	8461747	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	CDS	8461748	8462159	0.97	-	0	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	exon	8461748	8462159	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	intron	8462160	8462253	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	CDS	8462254	8462562	0.98	-	0	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	exon	8462254	8462562	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	intron	8462563	8462671	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	CDS	8462672	8462780	0.97	-	1	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	exon	8462672	8462780	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	intron	8462781	8462859	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	CDS	8462860	8463247	0.87	-	2	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	exon	8462860	8463247	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	intron	8463248	8463379	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	CDS	8463380	8463437	0.87	-	0	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	exon	8463380	8463437	.	-	.	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
Ledus.S5	AUGUSTUS	start_codon	8463435	8463437	.	-	0	transcript_id "Ledus.S5G078500.t1"; gene_id "Ledus.S5G078500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12455.t1 is derived from g6076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12084653	12088282	.	-	.	Ledus.S4G161100
Ledus.S4	AUGUSTUS	transcript	12084653	12088282	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	stop_codon	12084650	12084652	.	-	0	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12084653	12084877	0.48	-	0	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12084653	12084877	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12084878	12084963	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12084964	12085013	1	-	2	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12084964	12085013	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12085014	12085113	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12085114	12085237	1	-	0	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12085114	12085237	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12085238	12085348	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12085349	12085418	0.98	-	1	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12085349	12085418	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12085419	12085508	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12085509	12085587	1	-	2	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12085509	12085587	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12085588	12085671	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12085672	12085748	1	-	1	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12085672	12085748	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12085749	12085835	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12085836	12085882	1	-	0	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12085836	12085882	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12085883	12086036	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12086037	12086153	1	-	0	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12086037	12086153	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12086154	12086303	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12086304	12086381	0.99	-	0	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12086304	12086381	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12086382	12086494	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12086495	12086638	0.98	-	0	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12086495	12086638	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12086639	12086853	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12086854	12087066	1	-	0	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12086854	12087066	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12087067	12087201	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12087202	12087341	1	-	2	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12087202	12087341	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12087342	12087430	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12087431	12087564	0.69	-	1	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12087431	12087564	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12087565	12087625	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12087626	12087724	0.66	-	1	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12087626	12087724	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12087725	12087875	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12087876	12087937	0.92	-	0	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12087876	12087937	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12087938	12088021	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12088022	12088126	0.92	-	0	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12088022	12088126	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	intron	12088127	12088210	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	CDS	12088211	12088282	0.64	-	0	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	exon	12088211	12088282	.	-	.	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
Ledus.S4	AUGUSTUS	start_codon	12088280	12088282	.	-	0	transcript_id "Ledus.S4G161100.t1"; gene_id "Ledus.S4G161100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6373.t1 is derived from g3816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30883543	30885153	.	-	.	Ledus.S1G379400
Ledus.S1	AUGUSTUS	transcript	30883543	30885153	.	-	.	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	stop_codon	30883540	30883542	.	-	0	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	CDS	30883543	30883841	1	-	2	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	exon	30883543	30883841	.	-	.	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	intron	30883842	30883913	.	-	.	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	CDS	30883914	30884350	1	-	1	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	exon	30883914	30884350	.	-	.	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	intron	30884351	30884431	.	-	.	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	CDS	30884432	30884514	1	-	0	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	exon	30884432	30884514	.	-	.	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	intron	30884515	30884592	.	-	.	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	CDS	30884593	30884779	1	-	1	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	exon	30884593	30884779	.	-	.	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	intron	30884780	30884857	.	-	.	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	CDS	30884858	30885153	1	-	0	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	exon	30884858	30885153	.	-	.	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
Ledus.S1	AUGUSTUS	start_codon	30885151	30885153	.	-	0	transcript_id "Ledus.S1G379400.t1"; gene_id "Ledus.S1G379400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7974.t1 is derived from g12645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8295395	8297600	.	+	.	Ledus.S5G075200
Ledus.S5	AUGUSTUS	transcript	8295395	8297600	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	start_codon	8295395	8295397	.	+	0	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	CDS	8295395	8295449	0.93	+	0	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	exon	8295395	8295449	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	intron	8295450	8295520	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	CDS	8295521	8295653	0.57	+	2	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	exon	8295521	8295653	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	intron	8295654	8295743	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	CDS	8295744	8295861	0.57	+	1	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	exon	8295744	8295861	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	intron	8295862	8296001	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	CDS	8296002	8296071	1	+	0	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	exon	8296002	8296071	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	intron	8296072	8296155	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	CDS	8296156	8296283	1	+	2	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	exon	8296156	8296283	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	intron	8296284	8296387	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	CDS	8296388	8296580	1	+	0	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	exon	8296388	8296580	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	intron	8296581	8296729	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	CDS	8296730	8296803	1	+	2	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	exon	8296730	8296803	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	intron	8296804	8296892	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	CDS	8296893	8296982	1	+	0	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	exon	8296893	8296982	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	intron	8296983	8297076	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	CDS	8297077	8297136	1	+	0	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	exon	8297077	8297136	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	intron	8297137	8297230	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	CDS	8297231	8297362	1	+	0	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	exon	8297231	8297362	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	intron	8297363	8297432	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	CDS	8297433	8297600	1	+	0	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	exon	8297433	8297600	.	+	.	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
Ledus.S5	AUGUSTUS	stop_codon	8297601	8297603	.	+	0	transcript_id "Ledus.S5G075200.t1"; gene_id "Ledus.S5G075200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg739.t1 is derived from g7600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4686424	4689125	.	+	.	Ledus.S2G062100
Ledus.S2	AUGUSTUS	transcript	4686424	4689125	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	start_codon	4686424	4686426	.	+	0	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	CDS	4686424	4686591	0.41	+	0	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	exon	4686424	4686591	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	intron	4686592	4686879	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	CDS	4686880	4687468	0.6	+	0	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	exon	4686880	4687468	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	intron	4687469	4687543	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	CDS	4687544	4687639	1	+	2	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	exon	4687544	4687639	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	intron	4687640	4687701	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	CDS	4687702	4687794	1	+	2	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	exon	4687702	4687794	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	intron	4687795	4687866	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	CDS	4687867	4687949	0.96	+	2	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	exon	4687867	4687949	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	intron	4687950	4688030	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	CDS	4688031	4688312	1	+	0	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	exon	4688031	4688312	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	intron	4688313	4688394	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	CDS	4688395	4688525	0.83	+	0	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	exon	4688395	4688525	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	intron	4688526	4688609	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	CDS	4688610	4688711	0.93	+	1	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	exon	4688610	4688711	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	intron	4688712	4688791	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	CDS	4688792	4688897	1	+	1	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	exon	4688792	4688897	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	intron	4688898	4688981	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	CDS	4688982	4689125	1	+	0	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	exon	4688982	4689125	.	+	.	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
Ledus.S2	AUGUSTUS	stop_codon	4689126	4689128	.	+	0	transcript_id "Ledus.S2G062100.t1"; gene_id "Ledus.S2G062100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1565.t1 is derived from g8426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10971749	10972123	.	+	.	Ledus.S2G144700
Ledus.S2	AUGUSTUS	transcript	10971749	10972123	.	+	.	transcript_id "Ledus.S2G144700.t1"; gene_id "Ledus.S2G144700"
Ledus.S2	AUGUSTUS	start_codon	10971749	10971751	.	+	0	transcript_id "Ledus.S2G144700.t1"; gene_id "Ledus.S2G144700"
Ledus.S2	AUGUSTUS	CDS	10971749	10971820	0.35	+	0	transcript_id "Ledus.S2G144700.t1"; gene_id "Ledus.S2G144700"
Ledus.S2	AUGUSTUS	exon	10971749	10971820	.	+	.	transcript_id "Ledus.S2G144700.t1"; gene_id "Ledus.S2G144700"
Ledus.S2	AUGUSTUS	intron	10971821	10971931	.	+	.	transcript_id "Ledus.S2G144700.t1"; gene_id "Ledus.S2G144700"
Ledus.S2	AUGUSTUS	CDS	10971932	10972123	0.21	+	0	transcript_id "Ledus.S2G144700.t1"; gene_id "Ledus.S2G144700"
Ledus.S2	AUGUSTUS	exon	10971932	10972123	.	+	.	transcript_id "Ledus.S2G144700.t1"; gene_id "Ledus.S2G144700"
Ledus.S2	AUGUSTUS	stop_codon	10972124	10972126	.	+	0	transcript_id "Ledus.S2G144700.t1"; gene_id "Ledus.S2G144700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9856.t1 is derived from g10886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10602818	10604092	.	-	.	Ledus.S3G133300
Ledus.S3	AUGUSTUS	transcript	10602818	10604092	.	-	.	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	stop_codon	10602815	10602817	.	-	0	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	CDS	10602818	10602853	1	-	0	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	exon	10602818	10602853	.	-	.	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	intron	10602854	10603277	.	-	.	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	CDS	10603278	10603401	1	-	1	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	exon	10603278	10603401	.	-	.	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	intron	10603402	10603738	.	-	.	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	CDS	10603739	10603819	1	-	1	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	exon	10603739	10603819	.	-	.	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	intron	10603820	10603964	.	-	.	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	CDS	10603965	10604092	0.52	-	0	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	exon	10603965	10604092	.	-	.	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
Ledus.S3	AUGUSTUS	start_codon	10604090	10604092	.	-	0	transcript_id "Ledus.S3G133300.t1"; gene_id "Ledus.S3G133300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg126.t1 is derived from g6987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	80350	86469	.	+	.	Ledus.S2G000800
Ledus.S2	AUGUSTUS	transcript	80350	86469	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	start_codon	80350	80352	.	+	0	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	CDS	80350	80583	0.94	+	0	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	exon	80350	80583	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	intron	80584	80711	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	CDS	80712	80867	0.99	+	0	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	exon	80712	80867	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	intron	80868	80944	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	CDS	80945	81211	1	+	0	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	exon	80945	81211	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	intron	81212	81300	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	CDS	81301	81603	1	+	0	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	exon	81301	81603	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	intron	81604	81686	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	CDS	81687	83248	1	+	0	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	exon	81687	83248	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	intron	83249	83345	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	CDS	83346	83553	0.88	+	1	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	exon	83346	83553	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	intron	83554	83643	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	CDS	83644	86469	1	+	0	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	exon	83644	86469	.	+	.	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
Ledus.S2	AUGUSTUS	stop_codon	86470	86472	.	+	0	transcript_id "Ledus.S2G000800.t1"; gene_id "Ledus.S2G000800"
# This transcript jg13136.t2 is derived from g6946.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13137.t1 is derived from g6947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6906235	6906627	.	-	.	Ledus.S6G019900
Ledus.S6	AUGUSTUS	transcript	6906235	6906627	.	-	.	transcript_id "Ledus.S6G019900.t1"; gene_id "Ledus.S6G019900"
Ledus.S6	AUGUSTUS	stop_codon	6906232	6906234	.	-	0	transcript_id "Ledus.S6G019900.t1"; gene_id "Ledus.S6G019900"
Ledus.S6	AUGUSTUS	CDS	6906235	6906627	0.98	-	0	transcript_id "Ledus.S6G019900.t1"; gene_id "Ledus.S6G019900"
Ledus.S6	AUGUSTUS	exon	6906235	6906627	.	-	.	transcript_id "Ledus.S6G019900.t1"; gene_id "Ledus.S6G019900"
Ledus.S6	AUGUSTUS	start_codon	6906625	6906627	.	-	0	transcript_id "Ledus.S6G019900.t1"; gene_id "Ledus.S6G019900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11107.t1 is derived from g4725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1888664	1888867	.	-	.	Ledus.S4G026300
Ledus.S4	AUGUSTUS	transcript	1888664	1888867	.	-	.	transcript_id "Ledus.S4G026300.t1"; gene_id "Ledus.S4G026300"
Ledus.S4	AUGUSTUS	stop_codon	1888661	1888663	.	-	0	transcript_id "Ledus.S4G026300.t1"; gene_id "Ledus.S4G026300"
Ledus.S4	AUGUSTUS	CDS	1888664	1888867	0.61	-	0	transcript_id "Ledus.S4G026300.t1"; gene_id "Ledus.S4G026300"
Ledus.S4	AUGUSTUS	exon	1888664	1888867	.	-	.	transcript_id "Ledus.S4G026300.t1"; gene_id "Ledus.S4G026300"
Ledus.S4	AUGUSTUS	start_codon	1888865	1888867	.	-	0	transcript_id "Ledus.S4G026300.t1"; gene_id "Ledus.S4G026300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8918.t1 is derived from g9948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3124676	3125839	.	-	.	Ledus.S3G039500
Ledus.S3	AUGUSTUS	transcript	3124676	3125839	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	stop_codon	3124673	3124675	.	-	0	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	CDS	3124676	3124734	0.77	-	2	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	exon	3124676	3124734	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	intron	3124735	3124845	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	CDS	3124846	3124948	0.77	-	0	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	exon	3124846	3124948	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	intron	3124949	3125038	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	CDS	3125039	3125194	1	-	0	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	exon	3125039	3125194	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	intron	3125195	3125286	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	CDS	3125287	3125314	1	-	1	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	exon	3125287	3125314	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	intron	3125315	3125440	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	CDS	3125441	3125477	1	-	2	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	exon	3125441	3125477	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	intron	3125478	3125584	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	CDS	3125585	3125705	1	-	0	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	exon	3125585	3125705	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	intron	3125706	3125836	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	CDS	3125837	3125839	0.45	-	0	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	exon	3125837	3125839	.	-	.	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
Ledus.S3	AUGUSTUS	start_codon	3125837	3125839	.	-	0	transcript_id "Ledus.S3G039500.t1"; gene_id "Ledus.S3G039500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4826.t1 is derived from g2264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19972370	19973471	.	+	.	Ledus.S1G224700
Ledus.S1	AUGUSTUS	transcript	19972370	19973471	.	+	.	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	start_codon	19972370	19972372	.	+	0	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	CDS	19972370	19972506	0.37	+	0	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	exon	19972370	19972506	.	+	.	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	intron	19972507	19972872	.	+	.	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	CDS	19972873	19972976	0.66	+	1	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	exon	19972873	19972976	.	+	.	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	intron	19972977	19973063	.	+	.	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	CDS	19973064	19973123	0.92	+	2	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	exon	19973064	19973123	.	+	.	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	intron	19973124	19973352	.	+	.	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	CDS	19973353	19973471	0.95	+	2	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	exon	19973353	19973471	.	+	.	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
Ledus.S1	AUGUSTUS	stop_codon	19973472	19973474	.	+	0	transcript_id "Ledus.S1G224700.t1"; gene_id "Ledus.S1G224700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10840.t1 is derived from g9.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C22	AUGUSTUS	gene	24982	28170	.	-	.	Ledus.C22G000700
Ledus.C22	AUGUSTUS	transcript	24982	28170	.	-	.	transcript_id "Ledus.C22G000700.t1"; gene_id "Ledus.C22G000700"
Ledus.C22	AUGUSTUS	stop_codon	24979	24981	.	-	0	transcript_id "Ledus.C22G000700.t1"; gene_id "Ledus.C22G000700"
Ledus.C22	AUGUSTUS	CDS	24982	28170	0.16	-	0	transcript_id "Ledus.C22G000700.t1"; gene_id "Ledus.C22G000700"
Ledus.C22	AUGUSTUS	exon	24982	28170	.	-	.	transcript_id "Ledus.C22G000700.t1"; gene_id "Ledus.C22G000700"
Ledus.C22	AUGUSTUS	start_codon	28168	28170	.	-	0	transcript_id "Ledus.C22G000700.t1"; gene_id "Ledus.C22G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3875.t1 is derived from g1311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13320874	13321968	.	+	.	Ledus.S1G129600
Ledus.S1	AUGUSTUS	transcript	13320874	13321968	.	+	.	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	start_codon	13320874	13320876	.	+	0	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	CDS	13320874	13321019	0.45	+	0	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	exon	13320874	13321019	.	+	.	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	intron	13321020	13321170	.	+	.	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	CDS	13321171	13321228	1	+	1	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	exon	13321171	13321228	.	+	.	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	intron	13321229	13321436	.	+	.	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	CDS	13321437	13321526	1	+	0	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	exon	13321437	13321526	.	+	.	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	intron	13321527	13321650	.	+	.	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	CDS	13321651	13321768	1	+	0	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	exon	13321651	13321768	.	+	.	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	intron	13321769	13321903	.	+	.	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	CDS	13321904	13321968	0.99	+	2	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	exon	13321904	13321968	.	+	.	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
Ledus.S1	AUGUSTUS	stop_codon	13321969	13321971	.	+	0	transcript_id "Ledus.S1G129600.t1"; gene_id "Ledus.S1G129600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5580.t1 is derived from g3019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25241639	25243242	.	-	.	Ledus.S1G300100
Ledus.S1	AUGUSTUS	transcript	25241639	25243242	.	-	.	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	stop_codon	25241636	25241638	.	-	0	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	CDS	25241639	25242073	0.86	-	0	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	exon	25241639	25242073	.	-	.	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	intron	25242074	25242185	.	-	.	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	CDS	25242186	25242353	1	-	0	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	exon	25242186	25242353	.	-	.	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	intron	25242354	25242440	.	-	.	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	CDS	25242441	25242512	1	-	0	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	exon	25242441	25242512	.	-	.	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	intron	25242513	25242609	.	-	.	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	CDS	25242610	25242722	1	-	2	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	exon	25242610	25242722	.	-	.	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	intron	25242723	25242986	.	-	.	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	CDS	25242987	25243242	0.56	-	0	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	exon	25242987	25243242	.	-	.	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
Ledus.S1	AUGUSTUS	start_codon	25243240	25243242	.	-	0	transcript_id "Ledus.S1G300100.t1"; gene_id "Ledus.S1G300100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4065.t1 is derived from g1501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14418651	14420415	.	-	.	Ledus.S1G148600
Ledus.S1	AUGUSTUS	transcript	14418651	14420415	.	-	.	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	stop_codon	14418648	14418650	.	-	0	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	CDS	14418651	14419035	1	-	1	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	exon	14418651	14419035	.	-	.	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	intron	14419036	14419124	.	-	.	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	CDS	14419125	14419321	1	-	0	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	exon	14419125	14419321	.	-	.	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	intron	14419322	14419396	.	-	.	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	CDS	14419397	14419700	1	-	1	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	exon	14419397	14419700	.	-	.	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	intron	14419701	14419786	.	-	.	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	CDS	14419787	14420415	0.81	-	0	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	exon	14419787	14420415	.	-	.	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
Ledus.S1	AUGUSTUS	start_codon	14420413	14420415	.	-	0	transcript_id "Ledus.S1G148600.t1"; gene_id "Ledus.S1G148600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7113.t1 is derived from g6644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1636861	1637937	.	-	.	Ledus.C7G017400
Ledus.C7	AUGUSTUS	transcript	1636861	1637937	.	-	.	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	stop_codon	1636858	1636860	.	-	0	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	CDS	1636861	1636971	1	-	0	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	exon	1636861	1636971	.	-	.	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	intron	1636972	1637049	.	-	.	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	CDS	1637050	1637190	1	-	0	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	exon	1637050	1637190	.	-	.	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	intron	1637191	1637276	.	-	.	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	CDS	1637277	1637572	1	-	2	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	exon	1637277	1637572	.	-	.	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	intron	1637573	1637642	.	-	.	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	CDS	1637643	1637937	0.94	-	0	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	exon	1637643	1637937	.	-	.	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
Ledus.C7	AUGUSTUS	start_codon	1637935	1637937	.	-	0	transcript_id "Ledus.C7G017400.t1"; gene_id "Ledus.C7G017400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9928.t1 is derived from g10958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11257559	11257810	.	-	.	Ledus.S3G140500
Ledus.S3	AUGUSTUS	transcript	11257559	11257810	.	-	.	transcript_id "Ledus.S3G140500.t1"; gene_id "Ledus.S3G140500"
Ledus.S3	AUGUSTUS	stop_codon	11257556	11257558	.	-	0	transcript_id "Ledus.S3G140500.t1"; gene_id "Ledus.S3G140500"
Ledus.S3	AUGUSTUS	CDS	11257559	11257810	0.9	-	0	transcript_id "Ledus.S3G140500.t1"; gene_id "Ledus.S3G140500"
Ledus.S3	AUGUSTUS	exon	11257559	11257810	.	-	.	transcript_id "Ledus.S3G140500.t1"; gene_id "Ledus.S3G140500"
Ledus.S3	AUGUSTUS	start_codon	11257808	11257810	.	-	0	transcript_id "Ledus.S3G140500.t1"; gene_id "Ledus.S3G140500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7681.t1 is derived from g12352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5147846	5149566	.	-	.	Ledus.S5G045900
Ledus.S5	AUGUSTUS	transcript	5147846	5149566	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	stop_codon	5147843	5147845	.	-	0	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	CDS	5147846	5147940	0.49	-	2	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	exon	5147846	5147940	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	intron	5147941	5148060	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	CDS	5148061	5148142	0.48	-	0	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	exon	5148061	5148142	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	intron	5148143	5148221	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	CDS	5148222	5148347	1	-	0	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	exon	5148222	5148347	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	intron	5148348	5148434	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	CDS	5148435	5148520	1	-	2	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	exon	5148435	5148520	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	intron	5148521	5148600	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	CDS	5148601	5148727	0.9	-	0	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	exon	5148601	5148727	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	intron	5148728	5148833	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	CDS	5148834	5148931	0.88	-	2	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	exon	5148834	5148931	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	intron	5148932	5149016	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	CDS	5149017	5149139	1	-	2	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	exon	5149017	5149139	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	intron	5149140	5149280	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	CDS	5149281	5149419	0.87	-	0	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	exon	5149281	5149419	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	intron	5149420	5149530	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	CDS	5149531	5149566	0.76	-	0	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	exon	5149531	5149566	.	-	.	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
Ledus.S5	AUGUSTUS	start_codon	5149564	5149566	.	-	0	transcript_id "Ledus.S5G045900.t1"; gene_id "Ledus.S5G045900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7781.t1 is derived from g12452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6542521	6543027	.	-	.	Ledus.S5G055900
Ledus.S5	AUGUSTUS	transcript	6542521	6543027	.	-	.	transcript_id "Ledus.S5G055900.t1"; gene_id "Ledus.S5G055900"
Ledus.S5	AUGUSTUS	stop_codon	6542518	6542520	.	-	0	transcript_id "Ledus.S5G055900.t1"; gene_id "Ledus.S5G055900"
Ledus.S5	AUGUSTUS	CDS	6542521	6542736	1	-	0	transcript_id "Ledus.S5G055900.t1"; gene_id "Ledus.S5G055900"
Ledus.S5	AUGUSTUS	exon	6542521	6542736	.	-	.	transcript_id "Ledus.S5G055900.t1"; gene_id "Ledus.S5G055900"
Ledus.S5	AUGUSTUS	intron	6542737	6542850	.	-	.	transcript_id "Ledus.S5G055900.t1"; gene_id "Ledus.S5G055900"
Ledus.S5	AUGUSTUS	CDS	6542851	6543027	1	-	0	transcript_id "Ledus.S5G055900.t1"; gene_id "Ledus.S5G055900"
Ledus.S5	AUGUSTUS	exon	6542851	6543027	.	-	.	transcript_id "Ledus.S5G055900.t1"; gene_id "Ledus.S5G055900"
Ledus.S5	AUGUSTUS	start_codon	6543025	6543027	.	-	0	transcript_id "Ledus.S5G055900.t1"; gene_id "Ledus.S5G055900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4155.t1 is derived from g1591.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14992974	14994019	.	-	.	Ledus.S1G157600
Ledus.S1	AUGUSTUS	transcript	14992974	14994019	.	-	.	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	stop_codon	14992971	14992973	.	-	0	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	CDS	14992974	14993056	0.6	-	2	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	exon	14992974	14993056	.	-	.	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	intron	14993057	14993144	.	-	.	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	CDS	14993145	14993172	0.59	-	0	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	exon	14993145	14993172	.	-	.	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	intron	14993173	14993238	.	-	.	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	CDS	14993239	14993257	0.46	-	1	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	exon	14993239	14993257	.	-	.	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	intron	14993258	14993359	.	-	.	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	CDS	14993360	14993481	0.58	-	0	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	exon	14993360	14993481	.	-	.	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	intron	14993482	14993618	.	-	.	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	CDS	14993619	14993733	0.95	-	1	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	exon	14993619	14993733	.	-	.	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	intron	14993734	14993834	.	-	.	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	CDS	14993835	14994019	0.85	-	0	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	exon	14993835	14994019	.	-	.	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
Ledus.S1	AUGUSTUS	start_codon	14994017	14994019	.	-	0	transcript_id "Ledus.S1G157600.t1"; gene_id "Ledus.S1G157600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2386.t1 is derived from g9249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17843294	17844819	.	-	.	Ledus.S2G226800
Ledus.S2	AUGUSTUS	transcript	17843294	17844819	.	-	.	transcript_id "Ledus.S2G226800.t1"; gene_id "Ledus.S2G226800"
Ledus.S2	AUGUSTUS	stop_codon	17843291	17843293	.	-	0	transcript_id "Ledus.S2G226800.t1"; gene_id "Ledus.S2G226800"
Ledus.S2	AUGUSTUS	CDS	17843294	17843979	1	-	2	transcript_id "Ledus.S2G226800.t1"; gene_id "Ledus.S2G226800"
Ledus.S2	AUGUSTUS	exon	17843294	17843979	.	-	.	transcript_id "Ledus.S2G226800.t1"; gene_id "Ledus.S2G226800"
Ledus.S2	AUGUSTUS	intron	17843980	17844067	.	-	.	transcript_id "Ledus.S2G226800.t1"; gene_id "Ledus.S2G226800"
Ledus.S2	AUGUSTUS	CDS	17844068	17844275	1	-	0	transcript_id "Ledus.S2G226800.t1"; gene_id "Ledus.S2G226800"
Ledus.S2	AUGUSTUS	exon	17844068	17844275	.	-	.	transcript_id "Ledus.S2G226800.t1"; gene_id "Ledus.S2G226800"
Ledus.S2	AUGUSTUS	intron	17844276	17844369	.	-	.	transcript_id "Ledus.S2G226800.t1"; gene_id "Ledus.S2G226800"
Ledus.S2	AUGUSTUS	CDS	17844370	17844819	0.98	-	0	transcript_id "Ledus.S2G226800.t1"; gene_id "Ledus.S2G226800"
Ledus.S2	AUGUSTUS	exon	17844370	17844819	.	-	.	transcript_id "Ledus.S2G226800.t1"; gene_id "Ledus.S2G226800"
Ledus.S2	AUGUSTUS	start_codon	17844817	17844819	.	-	0	transcript_id "Ledus.S2G226800.t1"; gene_id "Ledus.S2G226800"
# This transcript jg8471.t2 is derived from g13143.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8471.t3 is derived from g13143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8472.t1 is derived from g13144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12068883	12070044	.	-	.	Ledus.S5G125000
Ledus.S5	AUGUSTUS	transcript	12068883	12070044	.	-	.	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	stop_codon	12068880	12068882	.	-	0	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	CDS	12068883	12068885	1	-	0	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	exon	12068883	12068885	.	-	.	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	intron	12068886	12068970	.	-	.	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	CDS	12068971	12069052	1	-	1	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	exon	12068971	12069052	.	-	.	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	intron	12069053	12069140	.	-	.	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	CDS	12069141	12069259	1	-	0	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	exon	12069141	12069259	.	-	.	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	intron	12069260	12069432	.	-	.	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	CDS	12069433	12069552	1	-	0	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	exon	12069433	12069552	.	-	.	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	intron	12069553	12069639	.	-	.	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	CDS	12069640	12069710	1	-	2	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	exon	12069640	12069710	.	-	.	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	intron	12069711	12069854	.	-	.	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	CDS	12069855	12070044	0.55	-	0	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	exon	12069855	12070044	.	-	.	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
Ledus.S5	AUGUSTUS	start_codon	12070042	12070044	.	-	0	transcript_id "Ledus.S5G125000.t1"; gene_id "Ledus.S5G125000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg284.t1 is derived from g7145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1398127	1398595	.	-	.	Ledus.S2G016600
Ledus.S2	AUGUSTUS	transcript	1398127	1398595	.	-	.	transcript_id "Ledus.S2G016600.t1"; gene_id "Ledus.S2G016600"
Ledus.S2	AUGUSTUS	stop_codon	1398124	1398126	.	-	0	transcript_id "Ledus.S2G016600.t1"; gene_id "Ledus.S2G016600"
Ledus.S2	AUGUSTUS	CDS	1398127	1398179	0.92	-	2	transcript_id "Ledus.S2G016600.t1"; gene_id "Ledus.S2G016600"
Ledus.S2	AUGUSTUS	exon	1398127	1398179	.	-	.	transcript_id "Ledus.S2G016600.t1"; gene_id "Ledus.S2G016600"
Ledus.S2	AUGUSTUS	intron	1398180	1398255	.	-	.	transcript_id "Ledus.S2G016600.t1"; gene_id "Ledus.S2G016600"
Ledus.S2	AUGUSTUS	CDS	1398256	1398338	0.92	-	1	transcript_id "Ledus.S2G016600.t1"; gene_id "Ledus.S2G016600"
Ledus.S2	AUGUSTUS	exon	1398256	1398338	.	-	.	transcript_id "Ledus.S2G016600.t1"; gene_id "Ledus.S2G016600"
Ledus.S2	AUGUSTUS	intron	1398339	1398416	.	-	.	transcript_id "Ledus.S2G016600.t1"; gene_id "Ledus.S2G016600"
Ledus.S2	AUGUSTUS	CDS	1398417	1398595	0.55	-	0	transcript_id "Ledus.S2G016600.t1"; gene_id "Ledus.S2G016600"
Ledus.S2	AUGUSTUS	exon	1398417	1398595	.	-	.	transcript_id "Ledus.S2G016600.t1"; gene_id "Ledus.S2G016600"
Ledus.S2	AUGUSTUS	start_codon	1398593	1398595	.	-	0	transcript_id "Ledus.S2G016600.t1"; gene_id "Ledus.S2G016600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3499.t1 is derived from g934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8805611	8808072	.	-	.	Ledus.S1G092000
Ledus.S1	AUGUSTUS	transcript	8805611	8808072	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	stop_codon	8805608	8805610	.	-	0	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	CDS	8805611	8805652	1	-	0	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	exon	8805611	8805652	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	intron	8805653	8805774	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	CDS	8805775	8805846	1	-	0	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	exon	8805775	8805846	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	intron	8805847	8805943	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	CDS	8805944	8806037	1	-	1	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	exon	8805944	8806037	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	intron	8806038	8806248	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	CDS	8806249	8806397	1	-	0	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	exon	8806249	8806397	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	intron	8806398	8806540	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	CDS	8806541	8806871	1	-	1	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	exon	8806541	8806871	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	intron	8806872	8807015	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	CDS	8807016	8807347	1	-	0	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	exon	8807016	8807347	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	intron	8807348	8807475	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	CDS	8807476	8808072	0.64	-	0	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	exon	8807476	8808072	.	-	.	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
Ledus.S1	AUGUSTUS	start_codon	8808070	8808072	.	-	0	transcript_id "Ledus.S1G092000.t1"; gene_id "Ledus.S1G092000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11951.t1 is derived from g5570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7979747	7983064	.	+	.	Ledus.S4G110700
Ledus.S4	AUGUSTUS	transcript	7979747	7983064	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	start_codon	7979747	7979749	.	+	0	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	CDS	7979747	7979946	0.45	+	0	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	exon	7979747	7979946	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	intron	7979947	7980099	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	CDS	7980100	7980128	0.92	+	1	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	exon	7980100	7980128	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	intron	7980129	7980277	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	CDS	7980278	7980418	0.83	+	2	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	exon	7980278	7980418	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	intron	7980419	7980612	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	CDS	7980613	7981851	0.93	+	2	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	exon	7980613	7981851	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	intron	7981852	7982049	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	CDS	7982050	7982253	1	+	2	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	exon	7982050	7982253	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	intron	7982254	7982352	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	CDS	7982353	7982438	1	+	2	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	exon	7982353	7982438	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	intron	7982439	7982572	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	CDS	7982573	7982873	1	+	0	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	exon	7982573	7982873	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	intron	7982874	7983047	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	CDS	7983048	7983064	0.86	+	2	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	exon	7983048	7983064	.	+	.	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
Ledus.S4	AUGUSTUS	stop_codon	7983065	7983067	.	+	0	transcript_id "Ledus.S4G110700.t1"; gene_id "Ledus.S4G110700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4588.t1 is derived from g2025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17949147	17951354	.	+	.	Ledus.S1G200900
Ledus.S1	AUGUSTUS	transcript	17949147	17951354	.	+	.	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	start_codon	17949147	17949149	.	+	0	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	CDS	17949147	17949497	0.99	+	0	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	exon	17949147	17949497	.	+	.	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	intron	17949498	17949586	.	+	.	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	CDS	17949587	17949746	1	+	0	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	exon	17949587	17949746	.	+	.	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	intron	17949747	17949828	.	+	.	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	CDS	17949829	17950183	1	+	2	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	exon	17949829	17950183	.	+	.	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	intron	17950184	17950273	.	+	.	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	CDS	17950274	17950562	1	+	1	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	exon	17950274	17950562	.	+	.	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	intron	17950563	17950634	.	+	.	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	CDS	17950635	17951354	1	+	0	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	exon	17950635	17951354	.	+	.	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
Ledus.S1	AUGUSTUS	stop_codon	17951355	17951357	.	+	0	transcript_id "Ledus.S1G200900.t1"; gene_id "Ledus.S1G200900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10883.t1 is derived from g4501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	303604	304673	.	-	.	Ledus.S4G003900
Ledus.S4	AUGUSTUS	transcript	303604	304673	.	-	.	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	stop_codon	303601	303603	.	-	0	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	CDS	303604	303633	0.61	-	0	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	exon	303604	303633	.	-	.	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	intron	303634	303779	.	-	.	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	CDS	303780	303884	1	-	0	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	exon	303780	303884	.	-	.	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	intron	303885	303999	.	-	.	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	CDS	304000	304080	0.59	-	0	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	exon	304000	304080	.	-	.	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	intron	304081	304225	.	-	.	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	CDS	304226	304325	0.98	-	1	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	exon	304226	304325	.	-	.	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	intron	304326	304410	.	-	.	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	CDS	304411	304673	0.32	-	0	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	exon	304411	304673	.	-	.	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
Ledus.S4	AUGUSTUS	start_codon	304671	304673	.	-	0	transcript_id "Ledus.S4G003900.t1"; gene_id "Ledus.S4G003900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5791.t1 is derived from g3233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26891821	26893400	.	-	.	Ledus.S1G321200
Ledus.S1	AUGUSTUS	transcript	26891821	26893400	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	stop_codon	26891818	26891820	.	-	0	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	CDS	26891821	26891920	0.98	-	1	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	exon	26891821	26891920	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	intron	26891921	26892024	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	CDS	26892025	26892096	0.99	-	1	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	exon	26892025	26892096	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	intron	26892097	26892180	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	CDS	26892181	26892302	1	-	0	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	exon	26892181	26892302	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	intron	26892303	26892387	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	CDS	26892388	26892447	1	-	0	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	exon	26892388	26892447	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	intron	26892448	26892524	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	CDS	26892525	26892603	1	-	1	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	exon	26892525	26892603	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	intron	26892604	26892703	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	CDS	26892704	26892789	1	-	0	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	exon	26892704	26892789	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	intron	26892790	26892918	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	CDS	26892919	26893006	1	-	1	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	exon	26892919	26893006	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	intron	26893007	26893092	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	CDS	26893093	26893400	1	-	0	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	exon	26893093	26893400	.	-	.	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
Ledus.S1	AUGUSTUS	start_codon	26893398	26893400	.	-	0	transcript_id "Ledus.S1G321200.t1"; gene_id "Ledus.S1G321200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3470.t1 is derived from g905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8534960	8535897	.	-	.	Ledus.S1G089100
Ledus.S1	AUGUSTUS	transcript	8534960	8535897	.	-	.	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	stop_codon	8534957	8534959	.	-	0	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	CDS	8534960	8535000	1	-	2	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	exon	8534960	8535000	.	-	.	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	intron	8535001	8535084	.	-	.	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	CDS	8535085	8535262	1	-	0	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	exon	8535085	8535262	.	-	.	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	intron	8535263	8535345	.	-	.	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	CDS	8535346	8535449	1	-	2	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	exon	8535346	8535449	.	-	.	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	intron	8535450	8535878	.	-	.	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	CDS	8535879	8535897	1	-	0	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	exon	8535879	8535897	.	-	.	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
Ledus.S1	AUGUSTUS	start_codon	8535895	8535897	.	-	0	transcript_id "Ledus.S1G089100.t1"; gene_id "Ledus.S1G089100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12755.t1 is derived from g6377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14247791	14248093	.	-	.	Ledus.S4G191100
Ledus.S4	AUGUSTUS	transcript	14247791	14248093	.	-	.	transcript_id "Ledus.S4G191100.t1"; gene_id "Ledus.S4G191100"
Ledus.S4	AUGUSTUS	stop_codon	14247788	14247790	.	-	0	transcript_id "Ledus.S4G191100.t1"; gene_id "Ledus.S4G191100"
Ledus.S4	AUGUSTUS	CDS	14247791	14248093	0.73	-	0	transcript_id "Ledus.S4G191100.t1"; gene_id "Ledus.S4G191100"
Ledus.S4	AUGUSTUS	exon	14247791	14248093	.	-	.	transcript_id "Ledus.S4G191100.t1"; gene_id "Ledus.S4G191100"
Ledus.S4	AUGUSTUS	start_codon	14248091	14248093	.	-	0	transcript_id "Ledus.S4G191100.t1"; gene_id "Ledus.S4G191100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8364.t1 is derived from g13036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11138009	11139472	.	-	.	Ledus.S5G114200
Ledus.S5	AUGUSTUS	transcript	11138009	11139472	.	-	.	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	stop_codon	11138006	11138008	.	-	0	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	CDS	11138009	11138444	1	-	1	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	exon	11138009	11138444	.	-	.	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	intron	11138445	11138525	.	-	.	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	CDS	11138526	11138670	1	-	2	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	exon	11138526	11138670	.	-	.	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	intron	11138671	11138748	.	-	.	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	CDS	11138749	11139053	0.95	-	1	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	exon	11138749	11139053	.	-	.	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	intron	11139054	11139176	.	-	.	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	CDS	11139177	11139472	0.74	-	0	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	exon	11139177	11139472	.	-	.	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
Ledus.S5	AUGUSTUS	start_codon	11139470	11139472	.	-	0	transcript_id "Ledus.S5G114200.t1"; gene_id "Ledus.S5G114200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4444.t1 is derived from g1880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17136312	17137775	.	+	.	Ledus.S1G186500
Ledus.S1	AUGUSTUS	transcript	17136312	17137775	.	+	.	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	start_codon	17136312	17136314	.	+	0	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	CDS	17136312	17136608	0.85	+	0	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	exon	17136312	17136608	.	+	.	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	intron	17136609	17136848	.	+	.	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	CDS	17136849	17137151	1	+	0	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	exon	17136849	17137151	.	+	.	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	intron	17137152	17137233	.	+	.	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	CDS	17137234	17137347	1	+	0	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	exon	17137234	17137347	.	+	.	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	intron	17137348	17137444	.	+	.	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	CDS	17137445	17137576	1	+	0	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	exon	17137445	17137576	.	+	.	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	intron	17137577	17137658	.	+	.	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	CDS	17137659	17137775	0.98	+	0	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	exon	17137659	17137775	.	+	.	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
Ledus.S1	AUGUSTUS	stop_codon	17137776	17137778	.	+	0	transcript_id "Ledus.S1G186500.t1"; gene_id "Ledus.S1G186500"
# This transcript jg1485.t2 is derived from g8346.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1486.t1 is derived from g8347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10535737	10537201	.	-	.	Ledus.S2G136800
Ledus.S2	AUGUSTUS	transcript	10535737	10537201	.	-	.	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	stop_codon	10535734	10535736	.	-	0	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	CDS	10535737	10535990	1	-	2	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	exon	10535737	10535990	.	-	.	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	intron	10535991	10536076	.	-	.	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	CDS	10536077	10536314	1	-	0	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	exon	10536077	10536314	.	-	.	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	intron	10536315	10536402	.	-	.	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	CDS	10536403	10536736	0.82	-	1	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	exon	10536403	10536736	.	-	.	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	intron	10536737	10536846	.	-	.	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	CDS	10536847	10536941	1	-	0	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	exon	10536847	10536941	.	-	.	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	intron	10536942	10537120	.	-	.	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	CDS	10537121	10537201	1	-	0	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	exon	10537121	10537201	.	-	.	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
Ledus.S2	AUGUSTUS	start_codon	10537199	10537201	.	-	0	transcript_id "Ledus.S2G136800.t1"; gene_id "Ledus.S2G136800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4493.t1 is derived from g1929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17359287	17362179	.	+	.	Ledus.S1G191400
Ledus.S1	AUGUSTUS	transcript	17359287	17362179	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	start_codon	17359287	17359289	.	+	0	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	CDS	17359287	17359673	0.47	+	0	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	exon	17359287	17359673	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	intron	17359674	17359758	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	CDS	17359759	17359923	1	+	0	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	exon	17359759	17359923	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	intron	17359924	17360237	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	CDS	17360238	17360330	1	+	0	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	exon	17360238	17360330	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	intron	17360331	17360417	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	CDS	17360418	17360533	1	+	0	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	exon	17360418	17360533	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	intron	17360534	17360703	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	CDS	17360704	17360802	0.98	+	1	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	exon	17360704	17360802	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	intron	17360803	17360908	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	CDS	17360909	17361220	1	+	1	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	exon	17360909	17361220	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	intron	17361221	17361390	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	CDS	17361391	17361555	1	+	1	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	exon	17361391	17361555	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	intron	17361556	17361714	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	CDS	17361715	17361988	0.46	+	1	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	exon	17361715	17361988	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	intron	17361989	17362107	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	CDS	17362108	17362179	0.55	+	0	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	exon	17362108	17362179	.	+	.	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
Ledus.S1	AUGUSTUS	stop_codon	17362180	17362182	.	+	0	transcript_id "Ledus.S1G191400.t1"; gene_id "Ledus.S1G191400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4741.t1 is derived from g2179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19443731	19446500	.	+	.	Ledus.S1G216200
Ledus.S1	AUGUSTUS	transcript	19443731	19446500	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	start_codon	19443731	19443733	.	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	CDS	19443731	19443785	0.98	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	exon	19443731	19443785	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	intron	19443786	19443917	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	CDS	19443918	19443946	1	+	2	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	exon	19443918	19443946	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	intron	19443947	19444036	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	CDS	19444037	19444120	0.99	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	exon	19444037	19444120	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	intron	19444121	19444235	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	CDS	19444236	19444289	1	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	exon	19444236	19444289	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	intron	19444290	19444488	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	CDS	19444489	19444566	0.89	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	exon	19444489	19444566	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	intron	19444567	19444681	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	CDS	19444682	19444735	1	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	exon	19444682	19444735	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	intron	19444736	19444862	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	CDS	19444863	19444922	1	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	exon	19444863	19444922	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	intron	19444923	19445044	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	CDS	19445045	19445140	1	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	exon	19445045	19445140	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	intron	19445141	19445228	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	CDS	19445229	19445330	1	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	exon	19445229	19445330	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	intron	19445331	19445465	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	CDS	19445466	19445546	1	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	exon	19445466	19445546	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	intron	19445547	19445706	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	CDS	19445707	19446006	1	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	exon	19445707	19446006	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	intron	19446007	19446458	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	CDS	19446459	19446500	0.96	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	exon	19446459	19446500	.	+	.	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
Ledus.S1	AUGUSTUS	stop_codon	19446501	19446503	.	+	0	transcript_id "Ledus.S1G216200.t1"; gene_id "Ledus.S1G216200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12272.t1 is derived from g5892.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10727035	10728573	.	+	.	Ledus.S4G142800
Ledus.S4	AUGUSTUS	transcript	10727035	10728016	.	+	.	transcript_id "Ledus.S4G142800.t1"; gene_id "Ledus.S4G142800"
Ledus.S4	AUGUSTUS	start_codon	10727035	10727037	.	+	0	transcript_id "Ledus.S4G142800.t1"; gene_id "Ledus.S4G142800"
Ledus.S4	AUGUSTUS	CDS	10727035	10727926	0.99	+	0	transcript_id "Ledus.S4G142800.t1"; gene_id "Ledus.S4G142800"
Ledus.S4	AUGUSTUS	exon	10727035	10727926	.	+	.	transcript_id "Ledus.S4G142800.t1"; gene_id "Ledus.S4G142800"
Ledus.S4	AUGUSTUS	intron	10727927	10728014	.	+	.	transcript_id "Ledus.S4G142800.t1"; gene_id "Ledus.S4G142800"
Ledus.S4	AUGUSTUS	CDS	10728015	10728016	0.99	+	2	transcript_id "Ledus.S4G142800.t1"; gene_id "Ledus.S4G142800"
Ledus.S4	AUGUSTUS	exon	10728015	10728016	.	+	.	transcript_id "Ledus.S4G142800.t1"; gene_id "Ledus.S4G142800"
Ledus.S4	AUGUSTUS	stop_codon	10728017	10728019	.	+	0	transcript_id "Ledus.S4G142800.t1"; gene_id "Ledus.S4G142800"
Ledus.S4	AUGUSTUS	transcript	10727035	10728573	.	+	.	transcript_id "Ledus.S4G142800.t2"; gene_id "Ledus.S4G142800"
Ledus.S4	AUGUSTUS	start_codon	10727035	10727037	.	+	0	transcript_id "Ledus.S4G142800.t2"; gene_id "Ledus.S4G142800"
Ledus.S4	AUGUSTUS	CDS	10727035	10728573	1	+	0	transcript_id "Ledus.S4G142800.t2"; gene_id "Ledus.S4G142800"
Ledus.S4	AUGUSTUS	exon	10727035	10728573	.	+	.	transcript_id "Ledus.S4G142800.t2"; gene_id "Ledus.S4G142800"
Ledus.S4	AUGUSTUS	stop_codon	10728574	10728576	.	+	0	transcript_id "Ledus.S4G142800.t2"; gene_id "Ledus.S4G142800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8978.t1 is derived from g10008.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3650419	3657601	.	+	.	Ledus.S3G045500
Ledus.S3	AUGUSTUS	transcript	3650419	3657601	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	start_codon	3650419	3650421	.	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3650419	3650559	0.86	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3650419	3650559	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3650560	3650697	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3650698	3650807	1	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3650698	3650807	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3650808	3651317	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3651318	3651390	1	+	1	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3651318	3651390	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3651391	3651537	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3651538	3651599	1	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3651538	3651599	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3651600	3651749	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3651750	3651789	0.95	+	1	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3651750	3651789	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3651790	3651929	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3651930	3652043	0.96	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3651930	3652043	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3652044	3652162	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3652163	3652384	0.65	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3652163	3652384	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3652385	3652500	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3652501	3652567	0.9	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3652501	3652567	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3652568	3652673	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3652674	3653070	0.6	+	2	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3652674	3653070	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3653071	3653224	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3653225	3653372	1	+	1	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3653225	3653372	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3653373	3653478	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3653479	3653651	0.9	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3653479	3653651	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3653652	3653762	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3653763	3653862	0.98	+	1	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3653763	3653862	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3653863	3654249	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3654250	3654324	1	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3654250	3654324	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3654325	3654420	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3654421	3654555	1	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3654421	3654555	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3654556	3654728	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3654729	3654821	1	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3654729	3654821	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3654822	3654987	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3654988	3655170	1	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3654988	3655170	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3655171	3655323	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3655324	3655428	1	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3655324	3655428	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3655429	3655566	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3655567	3655725	1	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3655567	3655725	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3655726	3655874	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3655875	3655919	1	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3655875	3655919	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3655920	3656041	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3656042	3656251	0.99	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3656042	3656251	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3656252	3656398	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3656399	3656508	1	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3656399	3656508	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3656509	3656613	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3656614	3656670	1	+	1	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3656614	3656670	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3656671	3656761	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3656762	3656828	1	+	1	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3656762	3656828	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3656829	3657071	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3657072	3657153	0.99	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3657072	3657153	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3657154	3657233	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3657234	3657331	0.97	+	2	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3657234	3657331	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3657332	3657586	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3657587	3657601	0.99	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3657587	3657601	.	+	.	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	stop_codon	3657602	3657604	.	+	0	transcript_id "Ledus.S3G045500.t1"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	transcript	3650419	3657601	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	start_codon	3650419	3650421	.	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3650419	3650559	0.8	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3650419	3650559	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3650560	3650697	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3650698	3650807	1	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3650698	3650807	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3650808	3651317	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3651318	3651390	1	+	1	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3651318	3651390	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3651391	3651537	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3651538	3651599	1	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3651538	3651599	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3651600	3651901	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3651902	3652043	1	+	1	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3651902	3652043	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3652044	3652162	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3652163	3652384	0.65	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3652163	3652384	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3652385	3652500	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3652501	3652567	0.88	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3652501	3652567	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3652568	3652673	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3652674	3653070	0.61	+	2	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3652674	3653070	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3653071	3653224	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3653225	3653372	1	+	1	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3653225	3653372	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3653373	3653478	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3653479	3653651	0.89	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3653479	3653651	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3653652	3653762	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3653763	3653862	0.98	+	1	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3653763	3653862	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3653863	3654249	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3654250	3654324	1	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3654250	3654324	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3654325	3654420	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3654421	3654555	1	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3654421	3654555	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3654556	3654728	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3654729	3654821	1	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3654729	3654821	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3654822	3654987	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3654988	3655170	1	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3654988	3655170	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3655171	3655323	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3655324	3655428	1	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3655324	3655428	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3655429	3655566	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3655567	3655725	1	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3655567	3655725	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3655726	3655874	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3655875	3655919	1	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3655875	3655919	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3655920	3656041	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3656042	3656251	0.98	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3656042	3656251	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3656252	3656398	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3656399	3656508	0.99	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3656399	3656508	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3656509	3656613	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3656614	3656670	0.99	+	1	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3656614	3656670	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3656671	3656761	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3656762	3656828	1	+	1	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3656762	3656828	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3656829	3657071	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3657072	3657153	0.99	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3657072	3657153	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3657154	3657233	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3657234	3657331	0.97	+	2	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3657234	3657331	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	intron	3657332	3657586	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	CDS	3657587	3657601	0.98	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	exon	3657587	3657601	.	+	.	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
Ledus.S3	AUGUSTUS	stop_codon	3657602	3657604	.	+	0	transcript_id "Ledus.S3G045500.t2"; gene_id "Ledus.S3G045500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12416.t1 is derived from g6037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11902788	11903309	.	+	.	Ledus.S4G157200
Ledus.S4	AUGUSTUS	transcript	11902788	11903309	.	+	.	transcript_id "Ledus.S4G157200.t1"; gene_id "Ledus.S4G157200"
Ledus.S4	AUGUSTUS	start_codon	11902788	11902790	.	+	0	transcript_id "Ledus.S4G157200.t1"; gene_id "Ledus.S4G157200"
Ledus.S4	AUGUSTUS	CDS	11902788	11903309	0.54	+	0	transcript_id "Ledus.S4G157200.t1"; gene_id "Ledus.S4G157200"
Ledus.S4	AUGUSTUS	exon	11902788	11903309	.	+	.	transcript_id "Ledus.S4G157200.t1"; gene_id "Ledus.S4G157200"
Ledus.S4	AUGUSTUS	stop_codon	11903310	11903312	.	+	0	transcript_id "Ledus.S4G157200.t1"; gene_id "Ledus.S4G157200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9825.t1 is derived from g10855.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10263228	10270264	.	-	.	Ledus.S3G130200
Ledus.S3	AUGUSTUS	transcript	10263228	10270264	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	stop_codon	10263225	10263227	.	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10263228	10263326	0.95	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10263228	10263326	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10263327	10263445	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10263446	10263586	0.95	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10263446	10263586	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10263587	10263858	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10263859	10263952	1	-	1	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10263859	10263952	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10263953	10264164	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10264165	10264221	1	-	1	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10264165	10264221	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10264222	10264312	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10264313	10264377	1	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10264313	10264377	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10264378	10264484	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10264485	10264727	1	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10264485	10264727	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10264728	10264891	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10264892	10264948	1	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10264892	10264948	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10264949	10265210	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10265211	10265268	1	-	1	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10265211	10265268	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10265269	10265510	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10265511	10265736	0.99	-	2	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10265511	10265736	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10265737	10266014	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266015	10266196	1	-	1	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266015	10266196	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10266197	10266287	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266288	10266340	1	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266288	10266340	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10266341	10266423	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266424	10266483	1	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266424	10266483	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10266484	10266683	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266684	10266770	1	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266684	10266770	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10266771	10266989	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266990	10267034	1	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266990	10267034	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267035	10267185	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267186	10267218	0.94	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267186	10267218	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267219	10267289	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267290	10267294	0.93	-	2	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267290	10267294	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267295	10267449	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267450	10267657	0.94	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267450	10267657	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267658	10267788	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267789	10267857	1	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267789	10267857	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267858	10267954	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267955	10268112	0.99	-	2	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267955	10268112	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10268113	10268248	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10268249	10268350	0.99	-	2	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10268249	10268350	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10268351	10268526	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10268527	10268691	0.56	-	2	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10268527	10268691	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10268692	10268795	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10268796	10268997	0.35	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10268796	10268997	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10268998	10269274	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10269275	10270264	0.92	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10269275	10270264	.	-	.	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	start_codon	10270262	10270264	.	-	0	transcript_id "Ledus.S3G130200.t1"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	transcript	10263228	10270264	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	stop_codon	10263225	10263227	.	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10263228	10263326	0.91	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10263228	10263326	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10263327	10263445	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10263446	10263586	0.91	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10263446	10263586	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10263587	10263858	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10263859	10263952	1	-	1	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10263859	10263952	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10263953	10264164	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10264165	10264221	1	-	1	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10264165	10264221	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10264222	10264312	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10264313	10264377	1	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10264313	10264377	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10264378	10264484	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10264485	10264727	1	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10264485	10264727	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10264728	10264891	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10264892	10264948	1	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10264892	10264948	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10264949	10265210	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10265211	10265268	1	-	1	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10265211	10265268	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10265269	10265510	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10265511	10265736	0.99	-	2	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10265511	10265736	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10265737	10266014	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266015	10266196	1	-	1	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266015	10266196	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10266197	10266287	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266288	10266340	1	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266288	10266340	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10266341	10266423	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266424	10266483	1	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266424	10266483	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10266484	10266683	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266684	10266770	1	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266684	10266770	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10266771	10266989	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266990	10267034	1	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266990	10267034	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267035	10267185	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267186	10267218	0.94	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267186	10267218	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267219	10267289	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267290	10267294	0.92	-	2	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267290	10267294	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267295	10267449	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267450	10267657	0.94	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267450	10267657	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267658	10267788	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267789	10267857	1	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267789	10267857	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267858	10267954	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267955	10268115	0.97	-	2	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267955	10268115	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10268116	10268248	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10268249	10268350	0.98	-	2	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10268249	10268350	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10268351	10268526	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10268527	10268691	0.56	-	2	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10268527	10268691	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10268692	10268795	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10268796	10268997	0.36	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10268796	10268997	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10268998	10269274	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10269275	10270264	0.96	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10269275	10270264	.	-	.	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	start_codon	10270262	10270264	.	-	0	transcript_id "Ledus.S3G130200.t2"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	transcript	10263228	10270264	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	stop_codon	10263225	10263227	.	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10263228	10263326	0.9	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10263228	10263326	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10263327	10263445	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10263446	10263586	0.91	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10263446	10263586	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10263587	10263858	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10263859	10263952	1	-	1	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10263859	10263952	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10263953	10264164	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10264165	10264221	1	-	1	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10264165	10264221	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10264222	10264312	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10264313	10264377	1	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10264313	10264377	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10264378	10264484	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10264485	10264727	1	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10264485	10264727	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10264728	10264891	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10264892	10264948	1	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10264892	10264948	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10264949	10265210	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10265211	10265268	1	-	1	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10265211	10265268	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10265269	10265510	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10265511	10265736	0.99	-	2	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10265511	10265736	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10265737	10266014	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266015	10266196	1	-	1	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266015	10266196	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10266197	10266287	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266288	10266340	1	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266288	10266340	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10266341	10266423	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266424	10266483	1	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266424	10266483	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10266484	10266683	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266684	10266770	1	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266684	10266770	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10266771	10266989	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10266990	10267034	1	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10266990	10267034	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267035	10267185	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267186	10267218	0.92	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267186	10267218	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267219	10267289	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267290	10267294	0.89	-	2	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267290	10267294	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267295	10267449	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267450	10267657	0.92	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267450	10267657	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267658	10267788	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267789	10267857	1	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267789	10267857	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10267858	10267954	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10267955	10268112	0.72	-	2	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10267955	10268112	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10268113	10268248	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10268249	10268350	0.99	-	2	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10268249	10268350	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10268351	10268526	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10268527	10268691	0.62	-	2	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10268527	10268691	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10268692	10268795	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10268796	10268994	0.45	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10268796	10268994	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	intron	10268995	10269274	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	CDS	10269275	10270264	0.86	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	exon	10269275	10270264	.	-	.	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
Ledus.S3	AUGUSTUS	start_codon	10270262	10270264	.	-	0	transcript_id "Ledus.S3G130200.t3"; gene_id "Ledus.S3G130200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9004.t1 is derived from g10034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3820348	3820548	.	+	.	Ledus.S3G048100
Ledus.S3	AUGUSTUS	transcript	3820348	3820548	.	+	.	transcript_id "Ledus.S3G048100.t1"; gene_id "Ledus.S3G048100"
Ledus.S3	AUGUSTUS	start_codon	3820348	3820350	.	+	0	transcript_id "Ledus.S3G048100.t1"; gene_id "Ledus.S3G048100"
Ledus.S3	AUGUSTUS	CDS	3820348	3820548	0.52	+	0	transcript_id "Ledus.S3G048100.t1"; gene_id "Ledus.S3G048100"
Ledus.S3	AUGUSTUS	exon	3820348	3820548	.	+	.	transcript_id "Ledus.S3G048100.t1"; gene_id "Ledus.S3G048100"
Ledus.S3	AUGUSTUS	stop_codon	3820549	3820551	.	+	0	transcript_id "Ledus.S3G048100.t1"; gene_id "Ledus.S3G048100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4158.t1 is derived from g1594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15019013	15019252	.	+	.	Ledus.S1G157900
Ledus.S1	AUGUSTUS	transcript	15019013	15019252	.	+	.	transcript_id "Ledus.S1G157900.t1"; gene_id "Ledus.S1G157900"
Ledus.S1	AUGUSTUS	start_codon	15019013	15019015	.	+	0	transcript_id "Ledus.S1G157900.t1"; gene_id "Ledus.S1G157900"
Ledus.S1	AUGUSTUS	CDS	15019013	15019252	0.58	+	0	transcript_id "Ledus.S1G157900.t1"; gene_id "Ledus.S1G157900"
Ledus.S1	AUGUSTUS	exon	15019013	15019252	.	+	.	transcript_id "Ledus.S1G157900.t1"; gene_id "Ledus.S1G157900"
Ledus.S1	AUGUSTUS	stop_codon	15019253	15019255	.	+	0	transcript_id "Ledus.S1G157900.t1"; gene_id "Ledus.S1G157900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13061.t1 is derived from g6871.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4691974	4692297	.	+	.	Ledus.S6G012300
Ledus.S6	AUGUSTUS	transcript	4691974	4692297	.	+	.	transcript_id "Ledus.S6G012300.t1"; gene_id "Ledus.S6G012300"
Ledus.S6	AUGUSTUS	start_codon	4691974	4691976	.	+	0	transcript_id "Ledus.S6G012300.t1"; gene_id "Ledus.S6G012300"
Ledus.S6	AUGUSTUS	CDS	4691974	4692297	0.75	+	0	transcript_id "Ledus.S6G012300.t1"; gene_id "Ledus.S6G012300"
Ledus.S6	AUGUSTUS	exon	4691974	4692297	.	+	.	transcript_id "Ledus.S6G012300.t1"; gene_id "Ledus.S6G012300"
Ledus.S6	AUGUSTUS	stop_codon	4692298	4692300	.	+	0	transcript_id "Ledus.S6G012300.t1"; gene_id "Ledus.S6G012300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10288.t1 is derived from g11318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14090898	14092896	.	+	.	Ledus.S3G176500
Ledus.S3	AUGUSTUS	transcript	14090898	14092896	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	start_codon	14090898	14090900	.	+	0	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	CDS	14090898	14091467	0.54	+	0	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	exon	14090898	14091467	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	intron	14091468	14091556	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	CDS	14091557	14091697	1	+	0	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	exon	14091557	14091697	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	intron	14091698	14091891	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	CDS	14091892	14092047	1	+	0	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	exon	14091892	14092047	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	intron	14092048	14092133	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	CDS	14092134	14092255	0.99	+	0	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	exon	14092134	14092255	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	intron	14092256	14092377	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	CDS	14092378	14092494	1	+	1	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	exon	14092378	14092494	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	intron	14092495	14092582	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	CDS	14092583	14092643	1	+	1	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	exon	14092583	14092643	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	intron	14092644	14092734	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	CDS	14092735	14092896	0.98	+	0	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	exon	14092735	14092896	.	+	.	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
Ledus.S3	AUGUSTUS	stop_codon	14092897	14092899	.	+	0	transcript_id "Ledus.S3G176500.t1"; gene_id "Ledus.S3G176500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1023.t1 is derived from g7884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6810823	6815519	.	+	.	Ledus.S2G090500
Ledus.S2	AUGUSTUS	transcript	6810823	6815519	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	start_codon	6810823	6810825	.	+	0	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	CDS	6810823	6812913	0.75	+	0	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	exon	6810823	6812913	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	intron	6812914	6813007	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	CDS	6813008	6813227	1	+	0	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	exon	6813008	6813227	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	intron	6813228	6813377	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	CDS	6813378	6814049	0.99	+	2	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	exon	6813378	6814049	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	intron	6814050	6814183	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	CDS	6814184	6814904	0.97	+	2	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	exon	6814184	6814904	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	intron	6814905	6815013	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	CDS	6815014	6815083	0.96	+	1	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	exon	6815014	6815083	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	intron	6815084	6815231	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	CDS	6815232	6815282	0.68	+	0	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	exon	6815232	6815282	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	intron	6815283	6815362	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	CDS	6815363	6815374	0.65	+	0	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	exon	6815363	6815374	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	intron	6815375	6815474	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	CDS	6815475	6815519	0.67	+	0	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	exon	6815475	6815519	.	+	.	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
Ledus.S2	AUGUSTUS	stop_codon	6815520	6815522	.	+	0	transcript_id "Ledus.S2G090500.t1"; gene_id "Ledus.S2G090500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5978.t1 is derived from g3421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28129453	28134948	.	-	.	Ledus.S1G339900
Ledus.S1	AUGUSTUS	transcript	28129453	28134948	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	stop_codon	28129450	28129452	.	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28129453	28129582	0.87	-	1	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28129453	28129582	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28129583	28129684	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28129685	28129779	1	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28129685	28129779	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28129780	28129921	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28129922	28130003	0.99	-	1	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28129922	28130003	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28130004	28130108	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28130109	28130158	1	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28130109	28130158	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28130159	28130288	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28130289	28130357	1	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28130289	28130357	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28130358	28130527	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28130528	28130626	1	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28130528	28130626	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28130627	28130713	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28130714	28130792	1	-	1	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28130714	28130792	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28130793	28130885	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28130886	28130986	1	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28130886	28130986	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28130987	28131075	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28131076	28131144	1	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28131076	28131144	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28131145	28131271	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28131272	28131312	1	-	2	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28131272	28131312	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28131313	28131416	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28131417	28132144	0.95	-	1	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28131417	28132144	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28132145	28132269	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28132270	28132373	1	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28132270	28132373	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28132374	28132463	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28132464	28132904	0.99	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28132464	28132904	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28132905	28132999	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28133000	28133599	0.86	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28133000	28133599	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28133600	28133721	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28133722	28134151	0.86	-	1	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28133722	28134151	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28134152	28134282	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28134283	28134812	0.65	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28134283	28134812	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	intron	28134813	28134909	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	CDS	28134910	28134948	0.65	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	exon	28134910	28134948	.	-	.	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
Ledus.S1	AUGUSTUS	start_codon	28134946	28134948	.	-	0	transcript_id "Ledus.S1G339900.t1"; gene_id "Ledus.S1G339900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8057.t1 is derived from g12728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8945702	8946214	.	+	.	Ledus.S5G083500
Ledus.S5	AUGUSTUS	transcript	8945702	8946214	.	+	.	transcript_id "Ledus.S5G083500.t1"; gene_id "Ledus.S5G083500"
Ledus.S5	AUGUSTUS	start_codon	8945702	8945704	.	+	0	transcript_id "Ledus.S5G083500.t1"; gene_id "Ledus.S5G083500"
Ledus.S5	AUGUSTUS	CDS	8945702	8945897	0.45	+	0	transcript_id "Ledus.S5G083500.t1"; gene_id "Ledus.S5G083500"
Ledus.S5	AUGUSTUS	exon	8945702	8945897	.	+	.	transcript_id "Ledus.S5G083500.t1"; gene_id "Ledus.S5G083500"
Ledus.S5	AUGUSTUS	intron	8945898	8946047	.	+	.	transcript_id "Ledus.S5G083500.t1"; gene_id "Ledus.S5G083500"
Ledus.S5	AUGUSTUS	CDS	8946048	8946214	0.79	+	2	transcript_id "Ledus.S5G083500.t1"; gene_id "Ledus.S5G083500"
Ledus.S5	AUGUSTUS	exon	8946048	8946214	.	+	.	transcript_id "Ledus.S5G083500.t1"; gene_id "Ledus.S5G083500"
Ledus.S5	AUGUSTUS	stop_codon	8946215	8946217	.	+	0	transcript_id "Ledus.S5G083500.t1"; gene_id "Ledus.S5G083500"
# This transcript jg5871.t2 is derived from g3313.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5872.t1 is derived from g3314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27492527	27493108	.	-	.	Ledus.S1G329300
Ledus.S1	AUGUSTUS	transcript	27492527	27493108	.	-	.	transcript_id "Ledus.S1G329300.t1"; gene_id "Ledus.S1G329300"
Ledus.S1	AUGUSTUS	stop_codon	27492524	27492526	.	-	0	transcript_id "Ledus.S1G329300.t1"; gene_id "Ledus.S1G329300"
Ledus.S1	AUGUSTUS	CDS	27492527	27492651	0.5	-	2	transcript_id "Ledus.S1G329300.t1"; gene_id "Ledus.S1G329300"
Ledus.S1	AUGUSTUS	exon	27492527	27492651	.	-	.	transcript_id "Ledus.S1G329300.t1"; gene_id "Ledus.S1G329300"
Ledus.S1	AUGUSTUS	intron	27492652	27492873	.	-	.	transcript_id "Ledus.S1G329300.t1"; gene_id "Ledus.S1G329300"
Ledus.S1	AUGUSTUS	CDS	27492874	27493108	0.56	-	0	transcript_id "Ledus.S1G329300.t1"; gene_id "Ledus.S1G329300"
Ledus.S1	AUGUSTUS	exon	27492874	27493108	.	-	.	transcript_id "Ledus.S1G329300.t1"; gene_id "Ledus.S1G329300"
Ledus.S1	AUGUSTUS	start_codon	27493106	27493108	.	-	0	transcript_id "Ledus.S1G329300.t1"; gene_id "Ledus.S1G329300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4521.t1 is derived from g1958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17500925	17501167	.	-	.	Ledus.S1G194200
Ledus.S1	AUGUSTUS	transcript	17500925	17501167	.	-	.	transcript_id "Ledus.S1G194200.t1"; gene_id "Ledus.S1G194200"
Ledus.S1	AUGUSTUS	stop_codon	17500922	17500924	.	-	0	transcript_id "Ledus.S1G194200.t1"; gene_id "Ledus.S1G194200"
Ledus.S1	AUGUSTUS	CDS	17500925	17501167	0.53	-	0	transcript_id "Ledus.S1G194200.t1"; gene_id "Ledus.S1G194200"
Ledus.S1	AUGUSTUS	exon	17500925	17501167	.	-	.	transcript_id "Ledus.S1G194200.t1"; gene_id "Ledus.S1G194200"
Ledus.S1	AUGUSTUS	start_codon	17501165	17501167	.	-	0	transcript_id "Ledus.S1G194200.t1"; gene_id "Ledus.S1G194200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11929.t1 is derived from g5548.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7847335	7849485	.	-	.	Ledus.S4G108500
Ledus.S4	AUGUSTUS	transcript	7847335	7849485	.	-	.	transcript_id "Ledus.S4G108500.t1"; gene_id "Ledus.S4G108500"
Ledus.S4	AUGUSTUS	stop_codon	7847332	7847334	.	-	0	transcript_id "Ledus.S4G108500.t1"; gene_id "Ledus.S4G108500"
Ledus.S4	AUGUSTUS	CDS	7847335	7849485	1	-	0	transcript_id "Ledus.S4G108500.t1"; gene_id "Ledus.S4G108500"
Ledus.S4	AUGUSTUS	exon	7847335	7849485	.	-	.	transcript_id "Ledus.S4G108500.t1"; gene_id "Ledus.S4G108500"
Ledus.S4	AUGUSTUS	start_codon	7849483	7849485	.	-	0	transcript_id "Ledus.S4G108500.t1"; gene_id "Ledus.S4G108500"
Ledus.S4	AUGUSTUS	transcript	7847335	7849206	.	-	.	transcript_id "Ledus.S4G108500.t2"; gene_id "Ledus.S4G108500"
Ledus.S4	AUGUSTUS	stop_codon	7847332	7847334	.	-	0	transcript_id "Ledus.S4G108500.t2"; gene_id "Ledus.S4G108500"
Ledus.S4	AUGUSTUS	CDS	7847335	7849206	0.71	-	0	transcript_id "Ledus.S4G108500.t2"; gene_id "Ledus.S4G108500"
Ledus.S4	AUGUSTUS	exon	7847335	7849206	.	-	.	transcript_id "Ledus.S4G108500.t2"; gene_id "Ledus.S4G108500"
Ledus.S4	AUGUSTUS	start_codon	7849204	7849206	.	-	0	transcript_id "Ledus.S4G108500.t2"; gene_id "Ledus.S4G108500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9161.t1 is derived from g10191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4946271	4948341	.	+	.	Ledus.S3G063800
Ledus.S3	AUGUSTUS	transcript	4946271	4948341	.	+	.	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	start_codon	4946271	4946273	.	+	0	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	CDS	4946271	4946672	1	+	0	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	exon	4946271	4946672	.	+	.	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	intron	4946673	4946755	.	+	.	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	CDS	4946756	4947467	0.99	+	0	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	exon	4946756	4947467	.	+	.	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	intron	4947468	4947558	.	+	.	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	CDS	4947559	4947949	1	+	2	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	exon	4947559	4947949	.	+	.	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	intron	4947950	4948043	.	+	.	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	CDS	4948044	4948341	0.75	+	1	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	exon	4948044	4948341	.	+	.	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
Ledus.S3	AUGUSTUS	stop_codon	4948342	4948344	.	+	0	transcript_id "Ledus.S3G063800.t1"; gene_id "Ledus.S3G063800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8039.t1 is derived from g12710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8750588	8751656	.	-	.	Ledus.S5G081700
Ledus.S5	AUGUSTUS	transcript	8750588	8751656	.	-	.	transcript_id "Ledus.S5G081700.t1"; gene_id "Ledus.S5G081700"
Ledus.S5	AUGUSTUS	stop_codon	8750585	8750587	.	-	0	transcript_id "Ledus.S5G081700.t1"; gene_id "Ledus.S5G081700"
Ledus.S5	AUGUSTUS	CDS	8750588	8751352	0.67	-	0	transcript_id "Ledus.S5G081700.t1"; gene_id "Ledus.S5G081700"
Ledus.S5	AUGUSTUS	exon	8750588	8751352	.	-	.	transcript_id "Ledus.S5G081700.t1"; gene_id "Ledus.S5G081700"
Ledus.S5	AUGUSTUS	intron	8751353	8751494	.	-	.	transcript_id "Ledus.S5G081700.t1"; gene_id "Ledus.S5G081700"
Ledus.S5	AUGUSTUS	CDS	8751495	8751656	0.74	-	0	transcript_id "Ledus.S5G081700.t1"; gene_id "Ledus.S5G081700"
Ledus.S5	AUGUSTUS	exon	8751495	8751656	.	-	.	transcript_id "Ledus.S5G081700.t1"; gene_id "Ledus.S5G081700"
Ledus.S5	AUGUSTUS	start_codon	8751654	8751656	.	-	0	transcript_id "Ledus.S5G081700.t1"; gene_id "Ledus.S5G081700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8111.t1 is derived from g12782.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9170632	9172884	.	-	.	Ledus.S5G088900
Ledus.S5	AUGUSTUS	transcript	9170632	9172884	.	-	.	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	stop_codon	9170629	9170631	.	-	0	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	CDS	9170632	9170697	1	-	0	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	exon	9170632	9170697	.	-	.	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	intron	9170698	9170937	.	-	.	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	CDS	9170938	9171423	0.75	-	0	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	exon	9170938	9171423	.	-	.	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	intron	9171424	9171574	.	-	.	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	CDS	9171575	9171878	0.98	-	1	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	exon	9171575	9171878	.	-	.	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	intron	9171879	9172204	.	-	.	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	CDS	9172205	9172884	0.63	-	0	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	exon	9172205	9172884	.	-	.	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
Ledus.S5	AUGUSTUS	start_codon	9172882	9172884	.	-	0	transcript_id "Ledus.S5G088900.t1"; gene_id "Ledus.S5G088900"
# This transcript jg3753.t2 is derived from g1189.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3754.t1 is derived from g1190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11663220	11663672	.	-	.	Ledus.S1G117500
Ledus.S1	AUGUSTUS	transcript	11663220	11663672	.	-	.	transcript_id "Ledus.S1G117500.t1"; gene_id "Ledus.S1G117500"
Ledus.S1	AUGUSTUS	stop_codon	11663217	11663219	.	-	0	transcript_id "Ledus.S1G117500.t1"; gene_id "Ledus.S1G117500"
Ledus.S1	AUGUSTUS	CDS	11663220	11663243	0.89	-	0	transcript_id "Ledus.S1G117500.t1"; gene_id "Ledus.S1G117500"
Ledus.S1	AUGUSTUS	exon	11663220	11663243	.	-	.	transcript_id "Ledus.S1G117500.t1"; gene_id "Ledus.S1G117500"
Ledus.S1	AUGUSTUS	intron	11663244	11663333	.	-	.	transcript_id "Ledus.S1G117500.t1"; gene_id "Ledus.S1G117500"
Ledus.S1	AUGUSTUS	CDS	11663334	11663482	0.92	-	2	transcript_id "Ledus.S1G117500.t1"; gene_id "Ledus.S1G117500"
Ledus.S1	AUGUSTUS	exon	11663334	11663482	.	-	.	transcript_id "Ledus.S1G117500.t1"; gene_id "Ledus.S1G117500"
Ledus.S1	AUGUSTUS	intron	11663483	11663644	.	-	.	transcript_id "Ledus.S1G117500.t1"; gene_id "Ledus.S1G117500"
Ledus.S1	AUGUSTUS	CDS	11663645	11663672	0.93	-	0	transcript_id "Ledus.S1G117500.t1"; gene_id "Ledus.S1G117500"
Ledus.S1	AUGUSTUS	exon	11663645	11663672	.	-	.	transcript_id "Ledus.S1G117500.t1"; gene_id "Ledus.S1G117500"
Ledus.S1	AUGUSTUS	start_codon	11663670	11663672	.	-	0	transcript_id "Ledus.S1G117500.t1"; gene_id "Ledus.S1G117500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3395.t1 is derived from g830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8046966	8048102	.	+	.	Ledus.S1G081600
Ledus.S1	AUGUSTUS	transcript	8046966	8048102	.	+	.	transcript_id "Ledus.S1G081600.t1"; gene_id "Ledus.S1G081600"
Ledus.S1	AUGUSTUS	start_codon	8046966	8046968	.	+	0	transcript_id "Ledus.S1G081600.t1"; gene_id "Ledus.S1G081600"
Ledus.S1	AUGUSTUS	CDS	8046966	8047580	0.71	+	0	transcript_id "Ledus.S1G081600.t1"; gene_id "Ledus.S1G081600"
Ledus.S1	AUGUSTUS	exon	8046966	8047580	.	+	.	transcript_id "Ledus.S1G081600.t1"; gene_id "Ledus.S1G081600"
Ledus.S1	AUGUSTUS	intron	8047581	8047742	.	+	.	transcript_id "Ledus.S1G081600.t1"; gene_id "Ledus.S1G081600"
Ledus.S1	AUGUSTUS	CDS	8047743	8048102	1	+	0	transcript_id "Ledus.S1G081600.t1"; gene_id "Ledus.S1G081600"
Ledus.S1	AUGUSTUS	exon	8047743	8048102	.	+	.	transcript_id "Ledus.S1G081600.t1"; gene_id "Ledus.S1G081600"
Ledus.S1	AUGUSTUS	stop_codon	8048103	8048105	.	+	0	transcript_id "Ledus.S1G081600.t1"; gene_id "Ledus.S1G081600"
# This transcript jg6034.t2 is derived from g3477.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6035.t1 is derived from g3478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28609961	28610762	.	+	.	Ledus.S1G345600
Ledus.S1	AUGUSTUS	transcript	28609961	28610762	.	+	.	transcript_id "Ledus.S1G345600.t1"; gene_id "Ledus.S1G345600"
Ledus.S1	AUGUSTUS	start_codon	28609961	28609963	.	+	0	transcript_id "Ledus.S1G345600.t1"; gene_id "Ledus.S1G345600"
Ledus.S1	AUGUSTUS	CDS	28609961	28610077	1	+	0	transcript_id "Ledus.S1G345600.t1"; gene_id "Ledus.S1G345600"
Ledus.S1	AUGUSTUS	exon	28609961	28610077	.	+	.	transcript_id "Ledus.S1G345600.t1"; gene_id "Ledus.S1G345600"
Ledus.S1	AUGUSTUS	intron	28610078	28610472	.	+	.	transcript_id "Ledus.S1G345600.t1"; gene_id "Ledus.S1G345600"
Ledus.S1	AUGUSTUS	CDS	28610473	28610568	1	+	0	transcript_id "Ledus.S1G345600.t1"; gene_id "Ledus.S1G345600"
Ledus.S1	AUGUSTUS	exon	28610473	28610568	.	+	.	transcript_id "Ledus.S1G345600.t1"; gene_id "Ledus.S1G345600"
Ledus.S1	AUGUSTUS	intron	28610569	28610681	.	+	.	transcript_id "Ledus.S1G345600.t1"; gene_id "Ledus.S1G345600"
Ledus.S1	AUGUSTUS	CDS	28610682	28610762	1	+	0	transcript_id "Ledus.S1G345600.t1"; gene_id "Ledus.S1G345600"
Ledus.S1	AUGUSTUS	exon	28610682	28610762	.	+	.	transcript_id "Ledus.S1G345600.t1"; gene_id "Ledus.S1G345600"
Ledus.S1	AUGUSTUS	stop_codon	28610763	28610765	.	+	0	transcript_id "Ledus.S1G345600.t1"; gene_id "Ledus.S1G345600"
# This transcript jg877.t2 is derived from g7738.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg878.t1 is derived from g7739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5938180	5942013	.	-	.	Ledus.S2G076000
Ledus.S2	AUGUSTUS	transcript	5938180	5942013	.	-	.	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	stop_codon	5938177	5938179	.	-	0	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	CDS	5938180	5940951	0.98	-	0	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	exon	5938180	5940951	.	-	.	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	intron	5940952	5941051	.	-	.	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	CDS	5941052	5941084	1	-	0	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	exon	5941052	5941084	.	-	.	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	intron	5941085	5941176	.	-	.	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	CDS	5941177	5941326	1	-	0	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	exon	5941177	5941326	.	-	.	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	intron	5941327	5941422	.	-	.	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	CDS	5941423	5942013	0.44	-	0	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	exon	5941423	5942013	.	-	.	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
Ledus.S2	AUGUSTUS	start_codon	5942011	5942013	.	-	0	transcript_id "Ledus.S2G076000.t1"; gene_id "Ledus.S2G076000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10451.t1 is derived from g11481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15228192	15231975	.	-	.	Ledus.S3G192800
Ledus.S3	AUGUSTUS	transcript	15228192	15231975	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	stop_codon	15228189	15228191	.	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15228192	15228320	0.99	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15228192	15228320	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15228321	15228400	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15228401	15228644	1	-	1	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15228401	15228644	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15228645	15228740	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15228741	15228811	1	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15228741	15228811	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15228812	15228902	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15228903	15229038	1	-	1	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15228903	15229038	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15229039	15229183	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15229184	15229263	1	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15229184	15229263	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15229264	15229408	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15229409	15229522	1	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15229409	15229522	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15229523	15229614	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15229615	15229696	1	-	1	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15229615	15229696	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15229697	15229846	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15229847	15229935	1	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15229847	15229935	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15229936	15230135	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15230136	15230186	1	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15230136	15230186	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15230187	15230318	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15230319	15230428	1	-	2	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15230319	15230428	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15230429	15230522	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15230523	15230595	1	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15230523	15230595	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15230596	15230695	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15230696	15230751	1	-	2	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15230696	15230751	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15230752	15230927	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15230928	15231018	1	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15230928	15231018	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15231019	15231174	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15231175	15231261	1	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15231175	15231261	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15231262	15231421	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15231422	15231514	1	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15231422	15231514	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15231515	15231610	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15231611	15231730	1	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15231611	15231730	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15231731	15231803	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15231804	15231861	1	-	1	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15231804	15231861	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	intron	15231862	15231949	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	CDS	15231950	15231975	0.68	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	exon	15231950	15231975	.	-	.	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
Ledus.S3	AUGUSTUS	start_codon	15231973	15231975	.	-	0	transcript_id "Ledus.S3G192800.t1"; gene_id "Ledus.S3G192800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9459.t1 is derived from g10489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7135004	7137873	.	-	.	Ledus.S3G093600
Ledus.S3	AUGUSTUS	transcript	7135004	7137873	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	stop_codon	7135001	7135003	.	-	0	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	CDS	7135004	7135280	1	-	1	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	exon	7135004	7135280	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	intron	7135281	7135355	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	CDS	7135356	7135445	1	-	1	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	exon	7135356	7135445	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	intron	7135446	7135520	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	CDS	7135521	7135642	1	-	0	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	exon	7135521	7135642	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	intron	7135643	7135737	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	CDS	7135738	7135872	1	-	0	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	exon	7135738	7135872	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	intron	7135873	7135941	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	CDS	7135942	7136121	0.81	-	0	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	exon	7135942	7136121	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	intron	7136122	7136216	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	CDS	7136217	7136344	0.91	-	2	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	exon	7136217	7136344	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	intron	7136345	7136423	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	CDS	7136424	7136543	1	-	2	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	exon	7136424	7136543	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	intron	7136544	7136638	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	CDS	7136639	7136721	1	-	1	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	exon	7136639	7136721	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	intron	7136722	7136867	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	CDS	7136868	7136934	0.73	-	2	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	exon	7136868	7136934	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	intron	7136935	7137109	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	CDS	7137110	7137236	0.57	-	0	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	exon	7137110	7137236	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	intron	7137237	7137318	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	CDS	7137319	7137873	0.96	-	0	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	exon	7137319	7137873	.	-	.	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
Ledus.S3	AUGUSTUS	start_codon	7137871	7137873	.	-	0	transcript_id "Ledus.S3G093600.t1"; gene_id "Ledus.S3G093600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7507.t1 is derived from g12178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3507624	3508088	.	-	.	Ledus.S5G028500
Ledus.S5	AUGUSTUS	transcript	3507624	3508088	.	-	.	transcript_id "Ledus.S5G028500.t1"; gene_id "Ledus.S5G028500"
Ledus.S5	AUGUSTUS	stop_codon	3507621	3507623	.	-	0	transcript_id "Ledus.S5G028500.t1"; gene_id "Ledus.S5G028500"
Ledus.S5	AUGUSTUS	CDS	3507624	3508088	0.57	-	0	transcript_id "Ledus.S5G028500.t1"; gene_id "Ledus.S5G028500"
Ledus.S5	AUGUSTUS	exon	3507624	3508088	.	-	.	transcript_id "Ledus.S5G028500.t1"; gene_id "Ledus.S5G028500"
Ledus.S5	AUGUSTUS	start_codon	3508086	3508088	.	-	0	transcript_id "Ledus.S5G028500.t1"; gene_id "Ledus.S5G028500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2327.t1 is derived from g9190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17196890	17198049	.	-	.	Ledus.S2G220900
Ledus.S2	AUGUSTUS	transcript	17196890	17198049	.	-	.	transcript_id "Ledus.S2G220900.t1"; gene_id "Ledus.S2G220900"
Ledus.S2	AUGUSTUS	stop_codon	17196887	17196889	.	-	0	transcript_id "Ledus.S2G220900.t1"; gene_id "Ledus.S2G220900"
Ledus.S2	AUGUSTUS	CDS	17196890	17196989	0.89	-	1	transcript_id "Ledus.S2G220900.t1"; gene_id "Ledus.S2G220900"
Ledus.S2	AUGUSTUS	exon	17196890	17196989	.	-	.	transcript_id "Ledus.S2G220900.t1"; gene_id "Ledus.S2G220900"
Ledus.S2	AUGUSTUS	intron	17196990	17197078	.	-	.	transcript_id "Ledus.S2G220900.t1"; gene_id "Ledus.S2G220900"
Ledus.S2	AUGUSTUS	CDS	17197079	17197825	1	-	1	transcript_id "Ledus.S2G220900.t1"; gene_id "Ledus.S2G220900"
Ledus.S2	AUGUSTUS	exon	17197079	17197825	.	-	.	transcript_id "Ledus.S2G220900.t1"; gene_id "Ledus.S2G220900"
Ledus.S2	AUGUSTUS	intron	17197826	17197936	.	-	.	transcript_id "Ledus.S2G220900.t1"; gene_id "Ledus.S2G220900"
Ledus.S2	AUGUSTUS	CDS	17197937	17198049	1	-	0	transcript_id "Ledus.S2G220900.t1"; gene_id "Ledus.S2G220900"
Ledus.S2	AUGUSTUS	exon	17197937	17198049	.	-	.	transcript_id "Ledus.S2G220900.t1"; gene_id "Ledus.S2G220900"
Ledus.S2	AUGUSTUS	start_codon	17198047	17198049	.	-	0	transcript_id "Ledus.S2G220900.t1"; gene_id "Ledus.S2G220900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12264.t1 is derived from g5884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10701657	10702859	.	-	.	Ledus.S4G142000
Ledus.S4	AUGUSTUS	transcript	10701657	10702859	.	-	.	transcript_id "Ledus.S4G142000.t1"; gene_id "Ledus.S4G142000"
Ledus.S4	AUGUSTUS	stop_codon	10701654	10701656	.	-	0	transcript_id "Ledus.S4G142000.t1"; gene_id "Ledus.S4G142000"
Ledus.S4	AUGUSTUS	CDS	10701657	10702859	0.96	-	0	transcript_id "Ledus.S4G142000.t1"; gene_id "Ledus.S4G142000"
Ledus.S4	AUGUSTUS	exon	10701657	10702859	.	-	.	transcript_id "Ledus.S4G142000.t1"; gene_id "Ledus.S4G142000"
Ledus.S4	AUGUSTUS	start_codon	10702857	10702859	.	-	0	transcript_id "Ledus.S4G142000.t1"; gene_id "Ledus.S4G142000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6286.t1 is derived from g3729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30139018	30140116	.	+	.	Ledus.S1G370700
Ledus.S1	AUGUSTUS	transcript	30139018	30140116	.	+	.	transcript_id "Ledus.S1G370700.t1"; gene_id "Ledus.S1G370700"
Ledus.S1	AUGUSTUS	start_codon	30139018	30139020	.	+	0	transcript_id "Ledus.S1G370700.t1"; gene_id "Ledus.S1G370700"
Ledus.S1	AUGUSTUS	CDS	30139018	30139309	0.73	+	0	transcript_id "Ledus.S1G370700.t1"; gene_id "Ledus.S1G370700"
Ledus.S1	AUGUSTUS	exon	30139018	30139309	.	+	.	transcript_id "Ledus.S1G370700.t1"; gene_id "Ledus.S1G370700"
Ledus.S1	AUGUSTUS	intron	30139310	30139433	.	+	.	transcript_id "Ledus.S1G370700.t1"; gene_id "Ledus.S1G370700"
Ledus.S1	AUGUSTUS	CDS	30139434	30140116	0.84	+	2	transcript_id "Ledus.S1G370700.t1"; gene_id "Ledus.S1G370700"
Ledus.S1	AUGUSTUS	exon	30139434	30140116	.	+	.	transcript_id "Ledus.S1G370700.t1"; gene_id "Ledus.S1G370700"
Ledus.S1	AUGUSTUS	stop_codon	30140117	30140119	.	+	0	transcript_id "Ledus.S1G370700.t1"; gene_id "Ledus.S1G370700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4966.t1 is derived from g2404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20906507	20912133	.	-	.	Ledus.S1G238700
Ledus.S1	AUGUSTUS	transcript	20906507	20912133	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	stop_codon	20906504	20906506	.	-	0	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	CDS	20906507	20907289	0.56	-	0	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	exon	20906507	20907289	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	intron	20907290	20907435	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	CDS	20907436	20909085	0.61	-	0	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	exon	20907436	20909085	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	intron	20909086	20909211	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	CDS	20909212	20909365	0.95	-	1	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	exon	20909212	20909365	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	intron	20909366	20909475	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	CDS	20909476	20909610	0.79	-	1	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	exon	20909476	20909610	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	intron	20909611	20909695	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	CDS	20909696	20910117	0.58	-	0	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	exon	20909696	20910117	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	intron	20910118	20910309	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	CDS	20910310	20911101	0.98	-	0	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	exon	20910310	20911101	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	intron	20911102	20911210	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	CDS	20911211	20911327	0.98	-	0	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	exon	20911211	20911327	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	intron	20911328	20911408	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	CDS	20911409	20911486	1	-	0	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	exon	20911409	20911486	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	intron	20911487	20911641	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	CDS	20911642	20912133	1	-	0	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	exon	20911642	20912133	.	-	.	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
Ledus.S1	AUGUSTUS	start_codon	20912131	20912133	.	-	0	transcript_id "Ledus.S1G238700.t1"; gene_id "Ledus.S1G238700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3654.t1 is derived from g1090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10428309	10436415	.	-	.	Ledus.S1G107500
Ledus.S1	AUGUSTUS	transcript	10428309	10436415	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	stop_codon	10428306	10428308	.	-	0	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	CDS	10428309	10428312	0.44	-	1	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	exon	10428309	10428312	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	intron	10428313	10428423	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	CDS	10428424	10428569	0.36	-	0	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	exon	10428424	10428569	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	intron	10428570	10428679	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	CDS	10428680	10429401	1	-	2	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	exon	10428680	10429401	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	intron	10429402	10429493	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	CDS	10429494	10434794	1	-	2	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	exon	10429494	10434794	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	intron	10434795	10435043	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	CDS	10435044	10435947	1	-	0	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	exon	10435044	10435947	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	intron	10435948	10436047	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	CDS	10436048	10436272	1	-	0	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	exon	10436048	10436272	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	intron	10436273	10436364	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	CDS	10436365	10436415	0.91	-	0	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	exon	10436365	10436415	.	-	.	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
Ledus.S1	AUGUSTUS	start_codon	10436413	10436415	.	-	0	transcript_id "Ledus.S1G107500.t1"; gene_id "Ledus.S1G107500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3217.t1 is derived from g652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6957548	6959679	.	+	.	Ledus.S1G063800
Ledus.S1	AUGUSTUS	transcript	6957548	6959679	.	+	.	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	start_codon	6957548	6957550	.	+	0	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	CDS	6957548	6957808	0.29	+	0	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	exon	6957548	6957808	.	+	.	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	intron	6957809	6958121	.	+	.	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	CDS	6958122	6958652	0.55	+	0	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	exon	6958122	6958652	.	+	.	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	intron	6958653	6958756	.	+	.	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	CDS	6958757	6958888	0.86	+	0	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	exon	6958757	6958888	.	+	.	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	intron	6958889	6958958	.	+	.	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	CDS	6958959	6959138	0.61	+	0	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	exon	6958959	6959138	.	+	.	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	intron	6959139	6959475	.	+	.	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	CDS	6959476	6959679	0.54	+	0	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	exon	6959476	6959679	.	+	.	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
Ledus.S1	AUGUSTUS	stop_codon	6959680	6959682	.	+	0	transcript_id "Ledus.S1G063800.t1"; gene_id "Ledus.S1G063800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3842.t1 is derived from g1278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13080722	13081027	.	-	.	Ledus.S1G126300
Ledus.S1	AUGUSTUS	transcript	13080722	13081027	.	-	.	transcript_id "Ledus.S1G126300.t1"; gene_id "Ledus.S1G126300"
Ledus.S1	AUGUSTUS	stop_codon	13080719	13080721	.	-	0	transcript_id "Ledus.S1G126300.t1"; gene_id "Ledus.S1G126300"
Ledus.S1	AUGUSTUS	CDS	13080722	13081027	0.81	-	0	transcript_id "Ledus.S1G126300.t1"; gene_id "Ledus.S1G126300"
Ledus.S1	AUGUSTUS	exon	13080722	13081027	.	-	.	transcript_id "Ledus.S1G126300.t1"; gene_id "Ledus.S1G126300"
Ledus.S1	AUGUSTUS	start_codon	13081025	13081027	.	-	0	transcript_id "Ledus.S1G126300.t1"; gene_id "Ledus.S1G126300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9810.t1 is derived from g10840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9996160	9996468	.	-	.	Ledus.S3G128700
Ledus.S3	AUGUSTUS	transcript	9996160	9996468	.	-	.	transcript_id "Ledus.S3G128700.t1"; gene_id "Ledus.S3G128700"
Ledus.S3	AUGUSTUS	stop_codon	9996157	9996159	.	-	0	transcript_id "Ledus.S3G128700.t1"; gene_id "Ledus.S3G128700"
Ledus.S3	AUGUSTUS	CDS	9996160	9996468	0.62	-	0	transcript_id "Ledus.S3G128700.t1"; gene_id "Ledus.S3G128700"
Ledus.S3	AUGUSTUS	exon	9996160	9996468	.	-	.	transcript_id "Ledus.S3G128700.t1"; gene_id "Ledus.S3G128700"
Ledus.S3	AUGUSTUS	start_codon	9996466	9996468	.	-	0	transcript_id "Ledus.S3G128700.t1"; gene_id "Ledus.S3G128700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11267.t1 is derived from g4885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3087325	3088427	.	+	.	Ledus.S4G042300
Ledus.S4	AUGUSTUS	transcript	3087325	3088427	.	+	.	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	start_codon	3087325	3087327	.	+	0	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	CDS	3087325	3087538	0.6	+	0	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	exon	3087325	3087538	.	+	.	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	intron	3087539	3087611	.	+	.	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	CDS	3087612	3087763	1	+	2	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	exon	3087612	3087763	.	+	.	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	intron	3087764	3087850	.	+	.	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	CDS	3087851	3088025	1	+	0	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	exon	3087851	3088025	.	+	.	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	intron	3088026	3088188	.	+	.	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	CDS	3088189	3088427	1	+	2	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	exon	3088189	3088427	.	+	.	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	stop_codon	3088428	3088430	.	+	0	transcript_id "Ledus.S4G042300.t1"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	transcript	3087325	3088427	.	+	.	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	start_codon	3087325	3087327	.	+	0	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	CDS	3087325	3087538	0.69	+	0	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	exon	3087325	3087538	.	+	.	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	intron	3087539	3087611	.	+	.	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	CDS	3087612	3087763	1	+	2	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	exon	3087612	3087763	.	+	.	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	intron	3087764	3087837	.	+	.	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	CDS	3087838	3087844	0.68	+	0	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	exon	3087838	3087844	.	+	.	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	intron	3087845	3087956	.	+	.	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	CDS	3087957	3088025	0.68	+	2	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	exon	3087957	3088025	.	+	.	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	intron	3088026	3088188	.	+	.	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	CDS	3088189	3088427	0.96	+	2	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	exon	3088189	3088427	.	+	.	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
Ledus.S4	AUGUSTUS	stop_codon	3088428	3088430	.	+	0	transcript_id "Ledus.S4G042300.t2"; gene_id "Ledus.S4G042300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2316.t1 is derived from g9179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17140524	17143586	.	-	.	Ledus.S2G219800
Ledus.S2	AUGUSTUS	transcript	17140524	17143586	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	stop_codon	17140521	17140523	.	-	0	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	CDS	17140524	17140730	1	-	0	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	exon	17140524	17140730	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	intron	17140731	17140859	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	CDS	17140860	17140976	1	-	0	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	exon	17140860	17140976	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	intron	17140977	17141055	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	CDS	17141056	17141610	0.99	-	0	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	exon	17141056	17141610	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	intron	17141611	17141738	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	CDS	17141739	17141846	1	-	0	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	exon	17141739	17141846	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	intron	17141847	17141934	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	CDS	17141935	17142432	1	-	0	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	exon	17141935	17142432	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	intron	17142433	17142527	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	CDS	17142528	17142657	1	-	1	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	exon	17142528	17142657	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	intron	17142658	17142766	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	CDS	17142767	17142894	0.94	-	0	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	exon	17142767	17142894	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	intron	17142895	17143028	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	CDS	17143029	17143586	0.87	-	0	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	exon	17143029	17143586	.	-	.	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
Ledus.S2	AUGUSTUS	start_codon	17143584	17143586	.	-	0	transcript_id "Ledus.S2G219800.t1"; gene_id "Ledus.S2G219800"
# This transcript jg11956.t2 is derived from g5575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11957.t1 is derived from g5576.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8009759	8011577	.	-	.	Ledus.S4G111300
Ledus.S4	AUGUSTUS	transcript	8009759	8011577	.	-	.	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	stop_codon	8009756	8009758	.	-	0	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	CDS	8009759	8010180	1	-	2	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	exon	8009759	8010180	.	-	.	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	intron	8010181	8010251	.	-	.	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	CDS	8010252	8010621	1	-	0	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	exon	8010252	8010621	.	-	.	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	intron	8010622	8010718	.	-	.	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	CDS	8010719	8010981	1	-	2	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	exon	8010719	8010981	.	-	.	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	intron	8010982	8011077	.	-	.	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	CDS	8011078	8011181	0.82	-	1	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	exon	8011078	8011181	.	-	.	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	intron	8011182	8011255	.	-	.	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	CDS	8011256	8011405	0.79	-	1	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	exon	8011256	8011405	.	-	.	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	intron	8011406	8011527	.	-	.	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	CDS	8011528	8011577	0.52	-	0	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	exon	8011528	8011577	.	-	.	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
Ledus.S4	AUGUSTUS	start_codon	8011575	8011577	.	-	0	transcript_id "Ledus.S4G111300.t1"; gene_id "Ledus.S4G111300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8121.t1 is derived from g12792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9220350	9224851	.	-	.	Ledus.S5G089900
Ledus.S5	AUGUSTUS	transcript	9220350	9224851	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	stop_codon	9220347	9220349	.	-	0	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	CDS	9220350	9220591	0.91	-	2	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	exon	9220350	9220591	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	intron	9220592	9220744	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	CDS	9220745	9220833	0.96	-	1	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	exon	9220745	9220833	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	intron	9220834	9221003	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	CDS	9221004	9221128	0.81	-	0	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	exon	9221004	9221128	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	intron	9221129	9221236	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	CDS	9221237	9221283	0.93	-	2	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	exon	9221237	9221283	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	intron	9221284	9221416	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	CDS	9221417	9221459	0.93	-	0	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	exon	9221417	9221459	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	intron	9221460	9221555	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	CDS	9221556	9221613	0.69	-	1	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	exon	9221556	9221613	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	intron	9221614	9221716	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	CDS	9221717	9223012	0.87	-	1	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	exon	9221717	9223012	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	intron	9223013	9223142	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	CDS	9223143	9224378	0.85	-	1	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	exon	9223143	9224378	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	intron	9224379	9224604	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	CDS	9224605	9224610	0.47	-	1	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	exon	9224605	9224610	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	intron	9224611	9224768	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	CDS	9224769	9224851	0.52	-	0	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	exon	9224769	9224851	.	-	.	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
Ledus.S5	AUGUSTUS	start_codon	9224849	9224851	.	-	0	transcript_id "Ledus.S5G089900.t1"; gene_id "Ledus.S5G089900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9207.t1 is derived from g10237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5361943	5364531	.	+	.	Ledus.S3G068400
Ledus.S3	AUGUSTUS	transcript	5361943	5364531	.	+	.	transcript_id "Ledus.S3G068400.t1"; gene_id "Ledus.S3G068400"
Ledus.S3	AUGUSTUS	start_codon	5361943	5361945	.	+	0	transcript_id "Ledus.S3G068400.t1"; gene_id "Ledus.S3G068400"
Ledus.S3	AUGUSTUS	CDS	5361943	5364531	1	+	0	transcript_id "Ledus.S3G068400.t1"; gene_id "Ledus.S3G068400"
Ledus.S3	AUGUSTUS	exon	5361943	5364531	.	+	.	transcript_id "Ledus.S3G068400.t1"; gene_id "Ledus.S3G068400"
Ledus.S3	AUGUSTUS	stop_codon	5364532	5364534	.	+	0	transcript_id "Ledus.S3G068400.t1"; gene_id "Ledus.S3G068400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8042.t1 is derived from g12713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8762281	8764095	.	+	.	Ledus.S5G082000
Ledus.S5	AUGUSTUS	transcript	8762281	8764095	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	start_codon	8762281	8762283	.	+	0	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	CDS	8762281	8762340	0.5	+	0	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	exon	8762281	8762340	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	intron	8762341	8762490	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	CDS	8762491	8762589	1	+	0	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	exon	8762491	8762589	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	intron	8762590	8762806	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	CDS	8762807	8762973	1	+	0	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	exon	8762807	8762973	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	intron	8762974	8763072	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	CDS	8763073	8763219	1	+	1	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	exon	8763073	8763219	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	intron	8763220	8763316	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	CDS	8763317	8763449	1	+	1	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	exon	8763317	8763449	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	intron	8763450	8763598	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	CDS	8763599	8763691	0.99	+	0	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	exon	8763599	8763691	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	intron	8763692	8763795	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	CDS	8763796	8764095	1	+	0	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	exon	8763796	8764095	.	+	.	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
Ledus.S5	AUGUSTUS	stop_codon	8764096	8764098	.	+	0	transcript_id "Ledus.S5G082000.t1"; gene_id "Ledus.S5G082000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7234.t1 is derived from g11905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	183582	184001	.	-	.	Ledus.S5G001200
Ledus.S5	AUGUSTUS	transcript	183582	184001	.	-	.	transcript_id "Ledus.S5G001200.t1"; gene_id "Ledus.S5G001200"
Ledus.S5	AUGUSTUS	stop_codon	183579	183581	.	-	0	transcript_id "Ledus.S5G001200.t1"; gene_id "Ledus.S5G001200"
Ledus.S5	AUGUSTUS	CDS	183582	184001	0.42	-	0	transcript_id "Ledus.S5G001200.t1"; gene_id "Ledus.S5G001200"
Ledus.S5	AUGUSTUS	exon	183582	184001	.	-	.	transcript_id "Ledus.S5G001200.t1"; gene_id "Ledus.S5G001200"
Ledus.S5	AUGUSTUS	start_codon	183999	184001	.	-	0	transcript_id "Ledus.S5G001200.t1"; gene_id "Ledus.S5G001200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2490.t1 is derived from g9353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18449314	18451013	.	+	.	Ledus.S2G237200
Ledus.S2	AUGUSTUS	transcript	18449314	18451013	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	start_codon	18449314	18449316	.	+	0	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	CDS	18449314	18449415	0.63	+	0	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	exon	18449314	18449415	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	intron	18449416	18449497	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	CDS	18449498	18449617	1	+	0	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	exon	18449498	18449617	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	intron	18449618	18449699	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	CDS	18449700	18449766	1	+	0	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	exon	18449700	18449766	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	intron	18449767	18449852	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	CDS	18449853	18449899	1	+	2	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	exon	18449853	18449899	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	intron	18449900	18449968	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	CDS	18449969	18450056	1	+	0	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	exon	18449969	18450056	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	intron	18450057	18450200	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	CDS	18450201	18450334	1	+	2	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	exon	18450201	18450334	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	intron	18450335	18450517	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	CDS	18450518	18450616	1	+	0	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	exon	18450518	18450616	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	intron	18450617	18450713	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	CDS	18450714	18450769	0.78	+	0	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	exon	18450714	18450769	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	intron	18450770	18450964	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	CDS	18450965	18451013	0.78	+	1	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	exon	18450965	18451013	.	+	.	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
Ledus.S2	AUGUSTUS	stop_codon	18451014	18451016	.	+	0	transcript_id "Ledus.S2G237200.t1"; gene_id "Ledus.S2G237200"
# This transcript jg11448.t1 is derived from g5066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4373069	4375450	.	+	.	Ledus.S4G060400
Ledus.S4	AUGUSTUS	transcript	4373069	4375450	.	+	.	transcript_id "Ledus.S4G060400.t1"; gene_id "Ledus.S4G060400"
Ledus.S4	AUGUSTUS	start_codon	4373069	4373071	.	+	0	transcript_id "Ledus.S4G060400.t1"; gene_id "Ledus.S4G060400"
Ledus.S4	AUGUSTUS	CDS	4373069	4375450	0.99	+	0	transcript_id "Ledus.S4G060400.t1"; gene_id "Ledus.S4G060400"
Ledus.S4	AUGUSTUS	exon	4373069	4375450	.	+	.	transcript_id "Ledus.S4G060400.t1"; gene_id "Ledus.S4G060400"
Ledus.S4	AUGUSTUS	stop_codon	4375451	4375453	.	+	0	transcript_id "Ledus.S4G060400.t1"; gene_id "Ledus.S4G060400"
Ledus.S4	AUGUSTUS	transcript	4373276	4375450	.	+	.	transcript_id "Ledus.S4G060400.t2"; gene_id "Ledus.S4G060400"
Ledus.S4	AUGUSTUS	start_codon	4373276	4373278	.	+	0	transcript_id "Ledus.S4G060400.t2"; gene_id "Ledus.S4G060400"
Ledus.S4	AUGUSTUS	CDS	4373276	4375450	0.97	+	0	transcript_id "Ledus.S4G060400.t2"; gene_id "Ledus.S4G060400"
Ledus.S4	AUGUSTUS	exon	4373276	4375450	.	+	.	transcript_id "Ledus.S4G060400.t2"; gene_id "Ledus.S4G060400"
Ledus.S4	AUGUSTUS	stop_codon	4375451	4375453	.	+	0	transcript_id "Ledus.S4G060400.t2"; gene_id "Ledus.S4G060400"
# This transcript jg5250.t2 is derived from g2689.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5251.t1 is derived from g2690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22738324	22742555	.	+	.	Ledus.S1G267200
Ledus.S1	AUGUSTUS	transcript	22738324	22742555	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	start_codon	22738324	22738326	.	+	0	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	CDS	22738324	22738572	0.98	+	0	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	exon	22738324	22738572	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	intron	22738573	22738714	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	CDS	22738715	22738819	1	+	0	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	exon	22738715	22738819	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	intron	22738820	22739147	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	CDS	22739148	22739674	0.99	+	0	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	exon	22739148	22739674	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	intron	22739675	22739813	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	CDS	22739814	22740134	1	+	1	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	exon	22739814	22740134	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	intron	22740135	22740320	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	CDS	22740321	22740412	0.68	+	1	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	exon	22740321	22740412	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	intron	22740413	22740508	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	CDS	22740509	22741192	0.67	+	2	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	exon	22740509	22741192	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	intron	22741193	22741385	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	CDS	22741386	22741451	0.62	+	2	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	exon	22741386	22741451	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	intron	22741452	22741621	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	CDS	22741622	22741779	0.53	+	2	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	exon	22741622	22741779	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	intron	22741780	22741899	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	CDS	22741900	22741975	0.8	+	0	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	exon	22741900	22741975	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	intron	22741976	22742085	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	CDS	22742086	22742555	0.81	+	2	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	exon	22742086	22742555	.	+	.	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
Ledus.S1	AUGUSTUS	stop_codon	22742556	22742558	.	+	0	transcript_id "Ledus.S1G267200.t1"; gene_id "Ledus.S1G267200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8739.t1 is derived from g9769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1705084	1705452	.	-	.	Ledus.S3G021600
Ledus.S3	AUGUSTUS	transcript	1705084	1705452	.	-	.	transcript_id "Ledus.S3G021600.t1"; gene_id "Ledus.S3G021600"
Ledus.S3	AUGUSTUS	stop_codon	1705081	1705083	.	-	0	transcript_id "Ledus.S3G021600.t1"; gene_id "Ledus.S3G021600"
Ledus.S3	AUGUSTUS	CDS	1705084	1705452	1	-	0	transcript_id "Ledus.S3G021600.t1"; gene_id "Ledus.S3G021600"
Ledus.S3	AUGUSTUS	exon	1705084	1705452	.	-	.	transcript_id "Ledus.S3G021600.t1"; gene_id "Ledus.S3G021600"
Ledus.S3	AUGUSTUS	start_codon	1705450	1705452	.	-	0	transcript_id "Ledus.S3G021600.t1"; gene_id "Ledus.S3G021600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9643.t1 is derived from g10673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8572791	8574671	.	-	.	Ledus.S3G112000
Ledus.S3	AUGUSTUS	transcript	8572791	8574671	.	-	.	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	stop_codon	8572788	8572790	.	-	0	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	CDS	8572791	8572958	1	-	0	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	exon	8572791	8572958	.	-	.	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	intron	8572959	8573047	.	-	.	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	CDS	8573048	8573325	1	-	2	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	exon	8573048	8573325	.	-	.	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	intron	8573326	8573464	.	-	.	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	CDS	8573465	8573627	1	-	0	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	exon	8573465	8573627	.	-	.	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	intron	8573628	8573704	.	-	.	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	CDS	8573705	8573807	1	-	1	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	exon	8573705	8573807	.	-	.	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	intron	8573808	8573995	.	-	.	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	CDS	8573996	8574117	1	-	0	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	exon	8573996	8574117	.	-	.	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	intron	8574118	8574248	.	-	.	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	CDS	8574249	8574671	1	-	0	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	exon	8574249	8574671	.	-	.	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
Ledus.S3	AUGUSTUS	start_codon	8574669	8574671	.	-	0	transcript_id "Ledus.S3G112000.t1"; gene_id "Ledus.S3G112000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12492.t1 is derived from g6113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12375009	12376346	.	-	.	Ledus.S4G164800
Ledus.S4	AUGUSTUS	transcript	12375009	12376346	.	-	.	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	stop_codon	12375006	12375008	.	-	0	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	CDS	12375009	12375176	0.97	-	0	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	exon	12375009	12375176	.	-	.	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	intron	12375177	12375262	.	-	.	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	CDS	12375263	12375418	1	-	0	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	exon	12375263	12375418	.	-	.	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	intron	12375419	12375506	.	-	.	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	CDS	12375507	12375584	1	-	0	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	exon	12375507	12375584	.	-	.	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	intron	12375585	12375665	.	-	.	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	CDS	12375666	12375797	1	-	0	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	exon	12375666	12375797	.	-	.	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	intron	12375798	12375972	.	-	.	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	CDS	12375973	12376041	1	-	0	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	exon	12375973	12376041	.	-	.	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	intron	12376042	12376340	.	-	.	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	CDS	12376341	12376346	0.91	-	0	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	exon	12376341	12376346	.	-	.	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
Ledus.S4	AUGUSTUS	start_codon	12376344	12376346	.	-	0	transcript_id "Ledus.S4G164800.t1"; gene_id "Ledus.S4G164800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11381.t1 is derived from g4999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3889944	3891647	.	-	.	Ledus.S4G053700
Ledus.S4	AUGUSTUS	transcript	3889944	3891647	.	-	.	transcript_id "Ledus.S4G053700.t1"; gene_id "Ledus.S4G053700"
Ledus.S4	AUGUSTUS	stop_codon	3889941	3889943	.	-	0	transcript_id "Ledus.S4G053700.t1"; gene_id "Ledus.S4G053700"
Ledus.S4	AUGUSTUS	CDS	3889944	3890465	1	-	0	transcript_id "Ledus.S4G053700.t1"; gene_id "Ledus.S4G053700"
Ledus.S4	AUGUSTUS	exon	3889944	3890465	.	-	.	transcript_id "Ledus.S4G053700.t1"; gene_id "Ledus.S4G053700"
Ledus.S4	AUGUSTUS	intron	3890466	3890555	.	-	.	transcript_id "Ledus.S4G053700.t1"; gene_id "Ledus.S4G053700"
Ledus.S4	AUGUSTUS	CDS	3890556	3891008	1	-	0	transcript_id "Ledus.S4G053700.t1"; gene_id "Ledus.S4G053700"
Ledus.S4	AUGUSTUS	exon	3890556	3891008	.	-	.	transcript_id "Ledus.S4G053700.t1"; gene_id "Ledus.S4G053700"
Ledus.S4	AUGUSTUS	intron	3891009	3891116	.	-	.	transcript_id "Ledus.S4G053700.t1"; gene_id "Ledus.S4G053700"
Ledus.S4	AUGUSTUS	CDS	3891117	3891647	0.9	-	0	transcript_id "Ledus.S4G053700.t1"; gene_id "Ledus.S4G053700"
Ledus.S4	AUGUSTUS	exon	3891117	3891647	.	-	.	transcript_id "Ledus.S4G053700.t1"; gene_id "Ledus.S4G053700"
Ledus.S4	AUGUSTUS	start_codon	3891645	3891647	.	-	0	transcript_id "Ledus.S4G053700.t1"; gene_id "Ledus.S4G053700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8640.t1 is derived from g9670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1027251	1029206	.	+	.	Ledus.S3G011700
Ledus.S3	AUGUSTUS	transcript	1027251	1029206	.	+	.	transcript_id "Ledus.S3G011700.t1"; gene_id "Ledus.S3G011700"
Ledus.S3	AUGUSTUS	start_codon	1027251	1027253	.	+	0	transcript_id "Ledus.S3G011700.t1"; gene_id "Ledus.S3G011700"
Ledus.S3	AUGUSTUS	CDS	1027251	1027568	0.91	+	0	transcript_id "Ledus.S3G011700.t1"; gene_id "Ledus.S3G011700"
Ledus.S3	AUGUSTUS	exon	1027251	1027568	.	+	.	transcript_id "Ledus.S3G011700.t1"; gene_id "Ledus.S3G011700"
Ledus.S3	AUGUSTUS	intron	1027569	1027700	.	+	.	transcript_id "Ledus.S3G011700.t1"; gene_id "Ledus.S3G011700"
Ledus.S3	AUGUSTUS	CDS	1027701	1029206	0.98	+	0	transcript_id "Ledus.S3G011700.t1"; gene_id "Ledus.S3G011700"
Ledus.S3	AUGUSTUS	exon	1027701	1029206	.	+	.	transcript_id "Ledus.S3G011700.t1"; gene_id "Ledus.S3G011700"
Ledus.S3	AUGUSTUS	stop_codon	1029207	1029209	.	+	0	transcript_id "Ledus.S3G011700.t1"; gene_id "Ledus.S3G011700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1013.t1 is derived from g7874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6772753	6773873	.	-	.	Ledus.S2G089500
Ledus.S2	AUGUSTUS	transcript	6772753	6773873	.	-	.	transcript_id "Ledus.S2G089500.t1"; gene_id "Ledus.S2G089500"
Ledus.S2	AUGUSTUS	stop_codon	6772750	6772752	.	-	0	transcript_id "Ledus.S2G089500.t1"; gene_id "Ledus.S2G089500"
Ledus.S2	AUGUSTUS	CDS	6772753	6773367	1	-	0	transcript_id "Ledus.S2G089500.t1"; gene_id "Ledus.S2G089500"
Ledus.S2	AUGUSTUS	exon	6772753	6773367	.	-	.	transcript_id "Ledus.S2G089500.t1"; gene_id "Ledus.S2G089500"
Ledus.S2	AUGUSTUS	intron	6773368	6773456	.	-	.	transcript_id "Ledus.S2G089500.t1"; gene_id "Ledus.S2G089500"
Ledus.S2	AUGUSTUS	CDS	6773457	6773873	0.81	-	0	transcript_id "Ledus.S2G089500.t1"; gene_id "Ledus.S2G089500"
Ledus.S2	AUGUSTUS	exon	6773457	6773873	.	-	.	transcript_id "Ledus.S2G089500.t1"; gene_id "Ledus.S2G089500"
Ledus.S2	AUGUSTUS	start_codon	6773871	6773873	.	-	0	transcript_id "Ledus.S2G089500.t1"; gene_id "Ledus.S2G089500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4016.t1 is derived from g1452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14091709	14094083	.	-	.	Ledus.S1G143700
Ledus.S1	AUGUSTUS	transcript	14091709	14094083	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	stop_codon	14091706	14091708	.	-	0	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	CDS	14091709	14091805	1	-	1	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	exon	14091709	14091805	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	intron	14091806	14091909	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	CDS	14091910	14092049	1	-	0	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	exon	14091910	14092049	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	intron	14092050	14092145	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	CDS	14092146	14092238	1	-	0	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	exon	14092146	14092238	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	intron	14092239	14092327	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	CDS	14092328	14092508	1	-	1	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	exon	14092328	14092508	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	intron	14092509	14092620	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	CDS	14092621	14092769	1	-	0	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	exon	14092621	14092769	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	intron	14092770	14092885	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	CDS	14092886	14093089	1	-	0	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	exon	14092886	14093089	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	intron	14093090	14093326	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	CDS	14093327	14093439	1	-	2	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	exon	14093327	14093439	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	intron	14093440	14094070	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	CDS	14094071	14094083	0.92	-	0	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	exon	14094071	14094083	.	-	.	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
Ledus.S1	AUGUSTUS	start_codon	14094081	14094083	.	-	0	transcript_id "Ledus.S1G143700.t1"; gene_id "Ledus.S1G143700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1962.t1 is derived from g8825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13842753	13843265	.	-	.	Ledus.S2G184400
Ledus.S2	AUGUSTUS	transcript	13842753	13843265	.	-	.	transcript_id "Ledus.S2G184400.t1"; gene_id "Ledus.S2G184400"
Ledus.S2	AUGUSTUS	stop_codon	13842750	13842752	.	-	0	transcript_id "Ledus.S2G184400.t1"; gene_id "Ledus.S2G184400"
Ledus.S2	AUGUSTUS	CDS	13842753	13843265	0.73	-	0	transcript_id "Ledus.S2G184400.t1"; gene_id "Ledus.S2G184400"
Ledus.S2	AUGUSTUS	exon	13842753	13843265	.	-	.	transcript_id "Ledus.S2G184400.t1"; gene_id "Ledus.S2G184400"
Ledus.S2	AUGUSTUS	start_codon	13843263	13843265	.	-	0	transcript_id "Ledus.S2G184400.t1"; gene_id "Ledus.S2G184400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9597.t1 is derived from g10627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8280632	8283057	.	-	.	Ledus.S3G107400
Ledus.S3	AUGUSTUS	transcript	8280632	8283057	.	-	.	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	stop_codon	8280629	8280631	.	-	0	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	CDS	8280632	8281070	0.99	-	1	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	exon	8280632	8281070	.	-	.	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	intron	8281071	8281157	.	-	.	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	CDS	8281158	8281345	0.97	-	0	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	exon	8281158	8281345	.	-	.	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	intron	8281346	8281426	.	-	.	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	CDS	8281427	8282057	0.29	-	1	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	exon	8281427	8282057	.	-	.	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	intron	8282058	8282152	.	-	.	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	CDS	8282153	8282198	0.35	-	2	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	exon	8282153	8282198	.	-	.	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	intron	8282199	8282284	.	-	.	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	CDS	8282285	8282851	0.81	-	2	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	exon	8282285	8282851	.	-	.	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	intron	8282852	8282972	.	-	.	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	CDS	8282973	8283057	0.85	-	0	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	exon	8282973	8283057	.	-	.	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
Ledus.S3	AUGUSTUS	start_codon	8283055	8283057	.	-	0	transcript_id "Ledus.S3G107400.t1"; gene_id "Ledus.S3G107400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4286.t1 is derived from g1722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16066403	16067191	.	-	.	Ledus.S1G170700
Ledus.S1	AUGUSTUS	transcript	16066403	16067191	.	-	.	transcript_id "Ledus.S1G170700.t1"; gene_id "Ledus.S1G170700"
Ledus.S1	AUGUSTUS	stop_codon	16066400	16066402	.	-	0	transcript_id "Ledus.S1G170700.t1"; gene_id "Ledus.S1G170700"
Ledus.S1	AUGUSTUS	CDS	16066403	16067191	0.73	-	0	transcript_id "Ledus.S1G170700.t1"; gene_id "Ledus.S1G170700"
Ledus.S1	AUGUSTUS	exon	16066403	16067191	.	-	.	transcript_id "Ledus.S1G170700.t1"; gene_id "Ledus.S1G170700"
Ledus.S1	AUGUSTUS	start_codon	16067189	16067191	.	-	0	transcript_id "Ledus.S1G170700.t1"; gene_id "Ledus.S1G170700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg506.t1 is derived from g7367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2973697	2974111	.	-	.	Ledus.S2G038800
Ledus.S2	AUGUSTUS	transcript	2973697	2974111	.	-	.	transcript_id "Ledus.S2G038800.t1"; gene_id "Ledus.S2G038800"
Ledus.S2	AUGUSTUS	stop_codon	2973694	2973696	.	-	0	transcript_id "Ledus.S2G038800.t1"; gene_id "Ledus.S2G038800"
Ledus.S2	AUGUSTUS	CDS	2973697	2973742	0.97	-	1	transcript_id "Ledus.S2G038800.t1"; gene_id "Ledus.S2G038800"
Ledus.S2	AUGUSTUS	exon	2973697	2973742	.	-	.	transcript_id "Ledus.S2G038800.t1"; gene_id "Ledus.S2G038800"
Ledus.S2	AUGUSTUS	intron	2973743	2973941	.	-	.	transcript_id "Ledus.S2G038800.t1"; gene_id "Ledus.S2G038800"
Ledus.S2	AUGUSTUS	CDS	2973942	2974111	1	-	0	transcript_id "Ledus.S2G038800.t1"; gene_id "Ledus.S2G038800"
Ledus.S2	AUGUSTUS	exon	2973942	2974111	.	-	.	transcript_id "Ledus.S2G038800.t1"; gene_id "Ledus.S2G038800"
Ledus.S2	AUGUSTUS	start_codon	2974109	2974111	.	-	0	transcript_id "Ledus.S2G038800.t1"; gene_id "Ledus.S2G038800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9733.t1 is derived from g10763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9478661	9479526	.	+	.	Ledus.S3G121000
Ledus.S3	AUGUSTUS	transcript	9478661	9479526	.	+	.	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	start_codon	9478661	9478663	.	+	0	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	CDS	9478661	9478796	0.92	+	0	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	exon	9478661	9478796	.	+	.	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	intron	9478797	9478894	.	+	.	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	CDS	9478895	9478987	1	+	2	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	exon	9478895	9478987	.	+	.	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	intron	9478988	9479099	.	+	.	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	CDS	9479100	9479290	1	+	2	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	exon	9479100	9479290	.	+	.	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	intron	9479291	9479364	.	+	.	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	CDS	9479365	9479428	1	+	0	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	exon	9479365	9479428	.	+	.	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	intron	9479429	9479500	.	+	.	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	CDS	9479501	9479526	1	+	2	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	exon	9479501	9479526	.	+	.	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	stop_codon	9479527	9479529	.	+	0	transcript_id "Ledus.S3G121000.t1"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	transcript	9478661	9479526	.	+	.	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	start_codon	9478661	9478663	.	+	0	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	CDS	9478661	9478796	0.94	+	0	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	exon	9478661	9478796	.	+	.	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	intron	9478797	9478885	.	+	.	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	CDS	9478886	9478987	1	+	2	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	exon	9478886	9478987	.	+	.	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	intron	9478988	9479099	.	+	.	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	CDS	9479100	9479290	0.99	+	2	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	exon	9479100	9479290	.	+	.	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	intron	9479291	9479364	.	+	.	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	CDS	9479365	9479428	1	+	0	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	exon	9479365	9479428	.	+	.	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	intron	9479429	9479500	.	+	.	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	CDS	9479501	9479526	1	+	2	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	exon	9479501	9479526	.	+	.	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
Ledus.S3	AUGUSTUS	stop_codon	9479527	9479529	.	+	0	transcript_id "Ledus.S3G121000.t2"; gene_id "Ledus.S3G121000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg611.t1 is derived from g7472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3633186	3634903	.	+	.	Ledus.S2G049300
Ledus.S2	AUGUSTUS	transcript	3633186	3634903	.	+	.	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	start_codon	3633186	3633188	.	+	0	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	CDS	3633186	3633797	0.97	+	0	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	exon	3633186	3633797	.	+	.	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	intron	3633798	3633948	.	+	.	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	CDS	3633949	3634174	1	+	0	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	exon	3633949	3634174	.	+	.	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	intron	3634175	3634262	.	+	.	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	CDS	3634263	3634485	1	+	2	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	exon	3634263	3634485	.	+	.	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	intron	3634486	3634587	.	+	.	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	CDS	3634588	3634801	1	+	1	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	exon	3634588	3634801	.	+	.	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	intron	3634802	3634894	.	+	.	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	CDS	3634895	3634903	1	+	0	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	exon	3634895	3634903	.	+	.	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
Ledus.S2	AUGUSTUS	stop_codon	3634904	3634906	.	+	0	transcript_id "Ledus.S2G049300.t1"; gene_id "Ledus.S2G049300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5647.t1 is derived from g3086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25563198	25564287	.	+	.	Ledus.S1G306800
Ledus.S1	AUGUSTUS	transcript	25563198	25564287	.	+	.	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	start_codon	25563198	25563200	.	+	0	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	CDS	25563198	25563338	0.48	+	0	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	exon	25563198	25563338	.	+	.	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	intron	25563339	25563508	.	+	.	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	CDS	25563509	25563759	0.94	+	0	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	exon	25563509	25563759	.	+	.	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	intron	25563760	25563870	.	+	.	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	CDS	25563871	25563962	0.95	+	1	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	exon	25563871	25563962	.	+	.	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	intron	25563963	25564042	.	+	.	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	CDS	25564043	25564287	0.96	+	2	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	exon	25564043	25564287	.	+	.	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
Ledus.S1	AUGUSTUS	stop_codon	25564288	25564290	.	+	0	transcript_id "Ledus.S1G306800.t1"; gene_id "Ledus.S1G306800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6751.t1 is derived from g4194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33759734	33760099	.	-	.	Ledus.S1G417200
Ledus.S1	AUGUSTUS	transcript	33759734	33760099	.	-	.	transcript_id "Ledus.S1G417200.t1"; gene_id "Ledus.S1G417200"
Ledus.S1	AUGUSTUS	stop_codon	33759731	33759733	.	-	0	transcript_id "Ledus.S1G417200.t1"; gene_id "Ledus.S1G417200"
Ledus.S1	AUGUSTUS	CDS	33759734	33760099	0.62	-	0	transcript_id "Ledus.S1G417200.t1"; gene_id "Ledus.S1G417200"
Ledus.S1	AUGUSTUS	exon	33759734	33760099	.	-	.	transcript_id "Ledus.S1G417200.t1"; gene_id "Ledus.S1G417200"
Ledus.S1	AUGUSTUS	start_codon	33760097	33760099	.	-	0	transcript_id "Ledus.S1G417200.t1"; gene_id "Ledus.S1G417200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg32.t1 is derived from g9544.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C12	AUGUSTUS	gene	127036	127335	.	+	.	Ledus.C12G000300
Ledus.C12	AUGUSTUS	transcript	127036	127335	.	+	.	transcript_id "Ledus.C12G000300.t1"; gene_id "Ledus.C12G000300"
Ledus.C12	AUGUSTUS	start_codon	127036	127038	.	+	0	transcript_id "Ledus.C12G000300.t1"; gene_id "Ledus.C12G000300"
Ledus.C12	AUGUSTUS	CDS	127036	127335	0.93	+	0	transcript_id "Ledus.C12G000300.t1"; gene_id "Ledus.C12G000300"
Ledus.C12	AUGUSTUS	exon	127036	127335	.	+	.	transcript_id "Ledus.C12G000300.t1"; gene_id "Ledus.C12G000300"
Ledus.C12	AUGUSTUS	stop_codon	127336	127338	.	+	0	transcript_id "Ledus.C12G000300.t1"; gene_id "Ledus.C12G000300"
# This transcript jg8550.t2 is derived from g9580.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8551.t1 is derived from g9581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	131205	132118	.	+	.	Ledus.S3G002800
Ledus.S3	AUGUSTUS	transcript	131205	132118	.	+	.	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	start_codon	131205	131207	.	+	0	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	CDS	131205	131534	0.61	+	0	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	exon	131205	131534	.	+	.	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	intron	131535	131628	.	+	.	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	CDS	131629	131690	1	+	0	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	exon	131629	131690	.	+	.	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	intron	131691	131773	.	+	.	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	CDS	131774	131814	1	+	1	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	exon	131774	131814	.	+	.	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	intron	131815	131903	.	+	.	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	CDS	131904	132118	0.98	+	2	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	exon	131904	132118	.	+	.	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
Ledus.S3	AUGUSTUS	stop_codon	132119	132121	.	+	0	transcript_id "Ledus.S3G002800.t1"; gene_id "Ledus.S3G002800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8226.t1 is derived from g12897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10039639	10046120	.	-	.	Ledus.S5G100400
Ledus.S5	AUGUSTUS	transcript	10039639	10046120	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	stop_codon	10039636	10039638	.	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10039639	10039674	0.78	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10039639	10039674	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10039675	10039838	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10039839	10039868	0.76	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10039839	10039868	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10039869	10040161	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10040162	10040230	0.77	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10040162	10040230	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10040231	10040353	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10040354	10040485	0.97	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10040354	10040485	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10040486	10040579	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10040580	10040775	1	-	1	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10040580	10040775	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10040776	10040934	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10040935	10041112	0.43	-	2	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10040935	10041112	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10041113	10041216	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10041217	10041295	0.41	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10041217	10041295	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10041296	10041397	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10041398	10041472	1	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10041398	10041472	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10041473	10041658	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10041659	10041817	0.24	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10041659	10041817	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10041818	10042196	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10042197	10042318	0.24	-	2	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10042197	10042318	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10042319	10042401	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10042402	10042419	0.47	-	2	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10042402	10042419	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10042420	10042796	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10042797	10042933	0.35	-	1	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10042797	10042933	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10042934	10043024	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10043025	10043119	0.43	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10043025	10043119	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10043120	10043206	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10043207	10043374	1	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10043207	10043374	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10043375	10043471	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10043472	10043534	1	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10043472	10043534	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10043535	10043643	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10043644	10043751	1	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10043644	10043751	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10043752	10044068	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10044069	10044178	1	-	2	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10044069	10044178	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10044179	10044279	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10044280	10044576	0.99	-	2	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10044280	10044576	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10044577	10044755	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10044756	10044834	1	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10044756	10044834	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10044835	10045062	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10045063	10045171	1	-	1	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10045063	10045171	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10045172	10045266	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10045267	10045308	1	-	1	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10045267	10045308	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10045309	10045405	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10045406	10045536	1	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10045406	10045536	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	intron	10045537	10045634	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	CDS	10045635	10046120	1	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	exon	10045635	10046120	.	-	.	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
Ledus.S5	AUGUSTUS	start_codon	10046118	10046120	.	-	0	transcript_id "Ledus.S5G100400.t1"; gene_id "Ledus.S5G100400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3133.t1 is derived from g568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6177377	6178531	.	+	.	Ledus.S1G055400
Ledus.S1	AUGUSTUS	transcript	6177377	6178531	.	+	.	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	start_codon	6177377	6177379	.	+	0	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	CDS	6177377	6177679	0.9	+	0	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	exon	6177377	6177679	.	+	.	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	intron	6177680	6177837	.	+	.	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	CDS	6177838	6178007	0.45	+	0	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	exon	6177838	6178007	.	+	.	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	intron	6178008	6178104	.	+	.	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	CDS	6178105	6178266	0.99	+	1	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	exon	6178105	6178266	.	+	.	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	intron	6178267	6178467	.	+	.	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	CDS	6178468	6178531	0.99	+	1	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	exon	6178468	6178531	.	+	.	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
Ledus.S1	AUGUSTUS	stop_codon	6178532	6178534	.	+	0	transcript_id "Ledus.S1G055400.t1"; gene_id "Ledus.S1G055400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4635.t1 is derived from g2072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18556744	18559673	.	+	.	Ledus.S1G205600
Ledus.S1	AUGUSTUS	transcript	18556744	18559673	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	start_codon	18556744	18556746	.	+	0	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18556744	18556861	0.49	+	0	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18556744	18556861	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	intron	18556862	18557048	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18557049	18557185	1	+	2	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18557049	18557185	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	intron	18557186	18557325	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18557326	18557448	1	+	0	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18557326	18557448	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	intron	18557449	18557612	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18557613	18557663	1	+	0	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18557613	18557663	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	intron	18557664	18557740	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18557741	18557854	1	+	0	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18557741	18557854	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	intron	18557855	18558012	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18558013	18558068	1	+	0	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18558013	18558068	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	intron	18558069	18558268	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18558269	18558310	1	+	1	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18558269	18558310	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	intron	18558311	18558548	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18558549	18558624	1	+	1	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18558549	18558624	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	intron	18558625	18558726	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18558727	18558798	0.86	+	0	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18558727	18558798	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	intron	18558799	18558902	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18558903	18559028	1	+	0	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18558903	18559028	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	intron	18559029	18559227	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18559228	18559332	1	+	0	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18559228	18559332	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	intron	18559333	18559443	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18559444	18559527	0.98	+	0	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18559444	18559527	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	intron	18559528	18559628	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	CDS	18559629	18559673	0.99	+	0	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	exon	18559629	18559673	.	+	.	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
Ledus.S1	AUGUSTUS	stop_codon	18559674	18559676	.	+	0	transcript_id "Ledus.S1G205600.t1"; gene_id "Ledus.S1G205600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg921.t1 is derived from g7782.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6177539	6179244	.	+	.	Ledus.S2G080300
Ledus.S2	AUGUSTUS	transcript	6177539	6179244	.	+	.	transcript_id "Ledus.S2G080300.t1"; gene_id "Ledus.S2G080300"
Ledus.S2	AUGUSTUS	start_codon	6177539	6177541	.	+	0	transcript_id "Ledus.S2G080300.t1"; gene_id "Ledus.S2G080300"
Ledus.S2	AUGUSTUS	CDS	6177539	6177608	0.01	+	0	transcript_id "Ledus.S2G080300.t1"; gene_id "Ledus.S2G080300"
Ledus.S2	AUGUSTUS	exon	6177539	6177608	.	+	.	transcript_id "Ledus.S2G080300.t1"; gene_id "Ledus.S2G080300"
Ledus.S2	AUGUSTUS	intron	6177609	6179182	.	+	.	transcript_id "Ledus.S2G080300.t1"; gene_id "Ledus.S2G080300"
Ledus.S2	AUGUSTUS	CDS	6179183	6179244	0.66	+	2	transcript_id "Ledus.S2G080300.t1"; gene_id "Ledus.S2G080300"
Ledus.S2	AUGUSTUS	exon	6179183	6179244	.	+	.	transcript_id "Ledus.S2G080300.t1"; gene_id "Ledus.S2G080300"
Ledus.S2	AUGUSTUS	stop_codon	6179245	6179247	.	+	0	transcript_id "Ledus.S2G080300.t1"; gene_id "Ledus.S2G080300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8827.t1 is derived from g9857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2185142	2188589	.	+	.	Ledus.S3G030400
Ledus.S3	AUGUSTUS	transcript	2185142	2188589	.	+	.	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	start_codon	2185142	2185144	.	+	0	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	CDS	2185142	2186979	0.73	+	0	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	exon	2185142	2186979	.	+	.	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	intron	2186980	2187108	.	+	.	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	CDS	2187109	2187223	1	+	1	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	exon	2187109	2187223	.	+	.	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	intron	2187224	2187313	.	+	.	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	CDS	2187314	2187421	1	+	0	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	exon	2187314	2187421	.	+	.	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	intron	2187422	2187572	.	+	.	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	CDS	2187573	2188173	0.21	+	0	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	exon	2187573	2188173	.	+	.	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	intron	2188174	2188399	.	+	.	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	CDS	2188400	2188489	0.06	+	2	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	exon	2188400	2188489	.	+	.	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	intron	2188490	2188587	.	+	.	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	CDS	2188588	2188589	0.13	+	2	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	exon	2188588	2188589	.	+	.	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
Ledus.S3	AUGUSTUS	stop_codon	2188590	2188592	.	+	0	transcript_id "Ledus.S3G030400.t1"; gene_id "Ledus.S3G030400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3872.t1 is derived from g1308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13294863	13300054	.	+	.	Ledus.S1G129300
Ledus.S1	AUGUSTUS	transcript	13294863	13300054	.	+	.	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	start_codon	13294863	13294865	.	+	0	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	CDS	13294863	13294942	0.95	+	0	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	exon	13294863	13294942	.	+	.	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	intron	13294943	13295119	.	+	.	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	CDS	13295120	13296767	0.99	+	1	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	exon	13295120	13296767	.	+	.	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	intron	13296768	13297429	.	+	.	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	CDS	13297430	13298699	1	+	0	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	exon	13297430	13298699	.	+	.	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	intron	13298700	13298834	.	+	.	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	CDS	13298835	13299421	0.99	+	2	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	exon	13298835	13299421	.	+	.	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	intron	13299422	13299793	.	+	.	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	CDS	13299794	13300054	0.89	+	0	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	exon	13299794	13300054	.	+	.	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
Ledus.S1	AUGUSTUS	stop_codon	13300055	13300057	.	+	0	transcript_id "Ledus.S1G129300.t1"; gene_id "Ledus.S1G129300"
# This transcript jg12625.t2 is derived from g6247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12626.t1 is derived from g6248.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13357789	13359597	.	-	.	Ledus.S4G178200
Ledus.S4	AUGUSTUS	transcript	13357983	13359597	.	-	.	transcript_id "Ledus.S4G178200.t1"; gene_id "Ledus.S4G178200"
Ledus.S4	AUGUSTUS	stop_codon	13357980	13357982	.	-	0	transcript_id "Ledus.S4G178200.t1"; gene_id "Ledus.S4G178200"
Ledus.S4	AUGUSTUS	CDS	13357983	13357995	0.83	-	1	transcript_id "Ledus.S4G178200.t1"; gene_id "Ledus.S4G178200"
Ledus.S4	AUGUSTUS	exon	13357983	13357995	.	-	.	transcript_id "Ledus.S4G178200.t1"; gene_id "Ledus.S4G178200"
Ledus.S4	AUGUSTUS	intron	13357996	13358074	.	-	.	transcript_id "Ledus.S4G178200.t1"; gene_id "Ledus.S4G178200"
Ledus.S4	AUGUSTUS	CDS	13358075	13359597	0.27	-	0	transcript_id "Ledus.S4G178200.t1"; gene_id "Ledus.S4G178200"
Ledus.S4	AUGUSTUS	exon	13358075	13359597	.	-	.	transcript_id "Ledus.S4G178200.t1"; gene_id "Ledus.S4G178200"
Ledus.S4	AUGUSTUS	start_codon	13359595	13359597	.	-	0	transcript_id "Ledus.S4G178200.t1"; gene_id "Ledus.S4G178200"
Ledus.S4	AUGUSTUS	transcript	13357789	13359597	.	-	.	transcript_id "Ledus.S4G178200.t2"; gene_id "Ledus.S4G178200"
Ledus.S4	AUGUSTUS	stop_codon	13357786	13357788	.	-	0	transcript_id "Ledus.S4G178200.t2"; gene_id "Ledus.S4G178200"
Ledus.S4	AUGUSTUS	CDS	13357789	13359597	0.68	-	0	transcript_id "Ledus.S4G178200.t2"; gene_id "Ledus.S4G178200"
Ledus.S4	AUGUSTUS	exon	13357789	13359597	.	-	.	transcript_id "Ledus.S4G178200.t2"; gene_id "Ledus.S4G178200"
Ledus.S4	AUGUSTUS	start_codon	13359595	13359597	.	-	0	transcript_id "Ledus.S4G178200.t2"; gene_id "Ledus.S4G178200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8458.t1 is derived from g13130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11801914	11803861	.	-	.	Ledus.S5G123600
Ledus.S5	AUGUSTUS	transcript	11801914	11803861	.	-	.	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	stop_codon	11801911	11801913	.	-	0	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	CDS	11801914	11802132	0.94	-	0	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	exon	11801914	11802132	.	-	.	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	intron	11802133	11802214	.	-	.	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	CDS	11802215	11802361	1	-	0	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	exon	11802215	11802361	.	-	.	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	intron	11802362	11802529	.	-	.	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	CDS	11802530	11802786	1	-	2	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	exon	11802530	11802786	.	-	.	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	intron	11802787	11803087	.	-	.	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	CDS	11803088	11803363	0.33	-	2	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	exon	11803088	11803363	.	-	.	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	intron	11803364	11803429	.	-	.	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	CDS	11803430	11803466	0.52	-	0	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	exon	11803430	11803466	.	-	.	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	intron	11803467	11803549	.	-	.	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	CDS	11803550	11803861	0.23	-	0	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	exon	11803550	11803861	.	-	.	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
Ledus.S5	AUGUSTUS	start_codon	11803859	11803861	.	-	0	transcript_id "Ledus.S5G123600.t1"; gene_id "Ledus.S5G123600"
# This transcript jg5557.t2 is derived from g2996.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5558.t1 is derived from g2997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25118924	25122229	.	+	.	Ledus.S1G297900
Ledus.S1	AUGUSTUS	transcript	25118924	25122229	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	start_codon	25118924	25118926	.	+	0	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	CDS	25118924	25119052	1	+	0	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	exon	25118924	25119052	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	intron	25119053	25119258	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	CDS	25119259	25119376	0.82	+	0	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	exon	25119259	25119376	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	intron	25119377	25119490	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	CDS	25119491	25119678	0.94	+	2	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	exon	25119491	25119678	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	intron	25119679	25120406	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	CDS	25120407	25120544	1	+	0	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	exon	25120407	25120544	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	intron	25120545	25120666	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	CDS	25120667	25120762	1	+	0	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	exon	25120667	25120762	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	intron	25120763	25120912	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	CDS	25120913	25120990	1	+	0	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	exon	25120913	25120990	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	intron	25120991	25121192	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	CDS	25121193	25121254	1	+	0	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	exon	25121193	25121254	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	intron	25121255	25121385	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	CDS	25121386	25121461	1	+	1	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	exon	25121386	25121461	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	intron	25121462	25121547	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	CDS	25121548	25121658	0.97	+	0	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	exon	25121548	25121658	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	intron	25121659	25121768	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	CDS	25121769	25121944	1	+	0	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	exon	25121769	25121944	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	intron	25121945	25122023	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	CDS	25122024	25122108	1	+	1	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	exon	25122024	25122108	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	intron	25122109	25122193	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	CDS	25122194	25122229	1	+	0	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	exon	25122194	25122229	.	+	.	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
Ledus.S1	AUGUSTUS	stop_codon	25122230	25122232	.	+	0	transcript_id "Ledus.S1G297900.t1"; gene_id "Ledus.S1G297900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9767.t1 is derived from g10797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9683939	9685434	.	+	.	Ledus.S3G124400
Ledus.S3	AUGUSTUS	transcript	9683939	9685434	.	+	.	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	start_codon	9683939	9683941	.	+	0	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	CDS	9683939	9684349	0.59	+	0	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	exon	9683939	9684349	.	+	.	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	intron	9684350	9684738	.	+	.	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	CDS	9684739	9684840	1	+	0	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	exon	9684739	9684840	.	+	.	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	intron	9684841	9684917	.	+	.	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	CDS	9684918	9685244	1	+	0	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	exon	9684918	9685244	.	+	.	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	intron	9685245	9685350	.	+	.	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	CDS	9685351	9685434	1	+	0	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	exon	9685351	9685434	.	+	.	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
Ledus.S3	AUGUSTUS	stop_codon	9685435	9685437	.	+	0	transcript_id "Ledus.S3G124400.t1"; gene_id "Ledus.S3G124400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9745.t1 is derived from g10775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9554886	9560560	.	+	.	Ledus.S3G122200
Ledus.S3	AUGUSTUS	transcript	9554886	9560560	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	start_codon	9554886	9554888	.	+	0	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9554886	9555626	0.7	+	0	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9554886	9555626	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9555627	9556045	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9556046	9556196	1	+	0	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9556046	9556196	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9556197	9556555	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9556556	9556743	1	+	2	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9556556	9556743	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9556744	9557039	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9557040	9557186	1	+	0	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9557040	9557186	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9557187	9557325	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9557326	9557521	1	+	0	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9557326	9557521	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9557522	9557624	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9557625	9557737	0.97	+	2	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9557625	9557737	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9557738	9557998	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9557999	9558071	0.99	+	0	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9557999	9558071	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9558072	9558171	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9558172	9558199	0.93	+	2	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9558172	9558199	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9558200	9558360	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9558361	9558466	0.48	+	1	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9558361	9558466	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9558467	9559019	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9559020	9559172	1	+	0	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9559020	9559172	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9559173	9559261	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9559262	9559469	1	+	0	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9559262	9559469	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9559470	9559800	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9559801	9560000	0.58	+	2	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9559801	9560000	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9560001	9560093	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9560094	9560180	1	+	0	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9560094	9560180	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	intron	9560181	9560365	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	CDS	9560366	9560560	1	+	0	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	exon	9560366	9560560	.	+	.	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
Ledus.S3	AUGUSTUS	stop_codon	9560561	9560563	.	+	0	transcript_id "Ledus.S3G122200.t1"; gene_id "Ledus.S3G122200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8132.t1 is derived from g12803.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9300737	9302823	.	-	.	Ledus.S5G091000
Ledus.S5	AUGUSTUS	transcript	9300737	9302823	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	stop_codon	9300734	9300736	.	-	0	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9300737	9300854	1	-	1	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9300737	9300854	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9300855	9300939	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9300940	9301025	1	-	0	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9300940	9301025	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9301026	9301107	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9301108	9301164	1	-	0	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9301108	9301164	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9301165	9301278	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9301279	9301392	1	-	0	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9301279	9301392	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9301393	9301489	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9301490	9301540	1	-	0	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9301490	9301540	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9301541	9301662	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9301663	9301760	1	-	2	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9301663	9301760	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9301761	9301851	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9301852	9302133	0.93	-	2	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9301852	9302133	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9302134	9302233	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9302234	9302292	0.94	-	1	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9302234	9302292	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9302293	9302567	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9302568	9302646	1	-	2	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9302568	9302646	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9302647	9302741	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9302742	9302823	1	-	0	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9302742	9302823	.	-	.	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	start_codon	9302821	9302823	.	-	0	transcript_id "Ledus.S5G091000.t1"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	transcript	9300737	9302257	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	stop_codon	9300734	9300736	.	-	0	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9300737	9300854	1	-	1	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9300737	9300854	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9300855	9300939	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9300940	9301025	1	-	0	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9300940	9301025	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9301026	9301107	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9301108	9301164	1	-	0	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9301108	9301164	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9301165	9301278	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9301279	9301392	1	-	0	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9301279	9301392	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9301393	9301489	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9301490	9301540	1	-	0	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9301490	9301540	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9301541	9301662	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9301663	9301760	1	-	2	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9301663	9301760	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	intron	9301761	9301851	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	CDS	9301852	9302257	0.39	-	0	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	exon	9301852	9302257	.	-	.	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
Ledus.S5	AUGUSTUS	start_codon	9302255	9302257	.	-	0	transcript_id "Ledus.S5G091000.t2"; gene_id "Ledus.S5G091000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5356.t1 is derived from g2795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23630890	23631492	.	-	.	Ledus.S1G277700
Ledus.S1	AUGUSTUS	transcript	23630890	23631492	.	-	.	transcript_id "Ledus.S1G277700.t1"; gene_id "Ledus.S1G277700"
Ledus.S1	AUGUSTUS	stop_codon	23630887	23630889	.	-	0	transcript_id "Ledus.S1G277700.t1"; gene_id "Ledus.S1G277700"
Ledus.S1	AUGUSTUS	CDS	23630890	23631492	0.43	-	0	transcript_id "Ledus.S1G277700.t1"; gene_id "Ledus.S1G277700"
Ledus.S1	AUGUSTUS	exon	23630890	23631492	.	-	.	transcript_id "Ledus.S1G277700.t1"; gene_id "Ledus.S1G277700"
Ledus.S1	AUGUSTUS	start_codon	23631490	23631492	.	-	0	transcript_id "Ledus.S1G277700.t1"; gene_id "Ledus.S1G277700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11162.t1 is derived from g4780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2254971	2256260	.	+	.	Ledus.S4G031800
Ledus.S4	AUGUSTUS	transcript	2254971	2256260	.	+	.	transcript_id "Ledus.S4G031800.t1"; gene_id "Ledus.S4G031800"
Ledus.S4	AUGUSTUS	start_codon	2254971	2254973	.	+	0	transcript_id "Ledus.S4G031800.t1"; gene_id "Ledus.S4G031800"
Ledus.S4	AUGUSTUS	CDS	2254971	2256260	0.88	+	0	transcript_id "Ledus.S4G031800.t1"; gene_id "Ledus.S4G031800"
Ledus.S4	AUGUSTUS	exon	2254971	2256260	.	+	.	transcript_id "Ledus.S4G031800.t1"; gene_id "Ledus.S4G031800"
Ledus.S4	AUGUSTUS	stop_codon	2256261	2256263	.	+	0	transcript_id "Ledus.S4G031800.t1"; gene_id "Ledus.S4G031800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1484.t1 is derived from g8345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10527658	10532049	.	-	.	Ledus.S2G136600
Ledus.S2	AUGUSTUS	transcript	10527658	10532049	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	stop_codon	10527655	10527657	.	-	0	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	CDS	10527658	10528176	0.95	-	0	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	exon	10527658	10528176	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	intron	10528177	10528287	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	CDS	10528288	10528414	1	-	1	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	exon	10528288	10528414	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	intron	10528415	10528620	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	CDS	10528621	10529007	0.6	-	1	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	exon	10528621	10529007	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	intron	10529008	10529148	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	CDS	10529149	10529201	1	-	0	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	exon	10529149	10529201	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	intron	10529202	10529314	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	CDS	10529315	10529828	0.99	-	1	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	exon	10529315	10529828	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	intron	10529829	10529922	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	CDS	10529923	10530206	0.97	-	0	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	exon	10529923	10530206	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	intron	10530207	10530310	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	CDS	10530311	10530764	0.57	-	1	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	exon	10530311	10530764	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	intron	10530765	10530907	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	CDS	10530908	10530943	0.99	-	1	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	exon	10530908	10530943	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	intron	10530944	10531731	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	CDS	10531732	10531813	0.98	-	2	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	exon	10531732	10531813	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	intron	10531814	10531973	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	CDS	10531974	10532049	0.7	-	0	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	exon	10531974	10532049	.	-	.	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
Ledus.S2	AUGUSTUS	start_codon	10532047	10532049	.	-	0	transcript_id "Ledus.S2G136600.t1"; gene_id "Ledus.S2G136600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11637.t1 is derived from g5256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5702859	5703840	.	+	.	Ledus.S4G079300
Ledus.S4	AUGUSTUS	transcript	5702859	5703840	.	+	.	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	start_codon	5702859	5702861	.	+	0	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	CDS	5702859	5702940	1	+	0	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	exon	5702859	5702940	.	+	.	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	intron	5702941	5703019	.	+	.	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	CDS	5703020	5703130	1	+	2	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	exon	5703020	5703130	.	+	.	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	intron	5703131	5703214	.	+	.	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	CDS	5703215	5703307	1	+	2	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	exon	5703215	5703307	.	+	.	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	intron	5703308	5703397	.	+	.	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	CDS	5703398	5703547	1	+	2	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	exon	5703398	5703547	.	+	.	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	intron	5703548	5703634	.	+	.	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	CDS	5703635	5703693	1	+	2	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	exon	5703635	5703693	.	+	.	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	intron	5703694	5703783	.	+	.	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	CDS	5703784	5703840	0.98	+	0	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	exon	5703784	5703840	.	+	.	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
Ledus.S4	AUGUSTUS	stop_codon	5703841	5703843	.	+	0	transcript_id "Ledus.S4G079300.t1"; gene_id "Ledus.S4G079300"
# This transcript jg4559.t2 is derived from g1996.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4560.t1 is derived from g1997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17677344	17679570	.	+	.	Ledus.S1G198100
Ledus.S1	AUGUSTUS	transcript	17677344	17679570	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	start_codon	17677344	17677346	.	+	0	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	CDS	17677344	17677541	0.89	+	0	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	exon	17677344	17677541	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	intron	17677542	17677638	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	CDS	17677639	17677755	1	+	0	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	exon	17677639	17677755	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	intron	17677756	17677840	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	CDS	17677841	17677933	1	+	0	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	exon	17677841	17677933	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	intron	17677934	17678021	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	CDS	17678022	17678084	1	+	0	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	exon	17678022	17678084	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	intron	17678085	17678172	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	CDS	17678173	17678271	1	+	0	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	exon	17678173	17678271	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	intron	17678272	17678426	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	CDS	17678427	17678503	0.86	+	0	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	exon	17678427	17678503	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	intron	17678504	17678613	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	CDS	17678614	17678726	0.99	+	1	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	exon	17678614	17678726	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	intron	17678727	17678862	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	CDS	17678863	17678951	0.99	+	2	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	exon	17678863	17678951	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	intron	17678952	17679039	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	CDS	17679040	17679117	0.99	+	0	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	exon	17679040	17679117	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	intron	17679118	17679221	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	CDS	17679222	17679296	1	+	0	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	exon	17679222	17679296	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	intron	17679297	17679396	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	CDS	17679397	17679570	1	+	0	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	exon	17679397	17679570	.	+	.	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
Ledus.S1	AUGUSTUS	stop_codon	17679571	17679573	.	+	0	transcript_id "Ledus.S1G198100.t1"; gene_id "Ledus.S1G198100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4652.t1 is derived from g2090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18715807	18717428	.	-	.	Ledus.S1G207300
Ledus.S1	AUGUSTUS	transcript	18715807	18717428	.	-	.	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	stop_codon	18715804	18715806	.	-	0	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	CDS	18715807	18716028	1	-	0	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	exon	18715807	18716028	.	-	.	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	intron	18716029	18716190	.	-	.	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	CDS	18716191	18716481	1	-	0	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	exon	18716191	18716481	.	-	.	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	intron	18716482	18716786	.	-	.	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	CDS	18716787	18716909	1	-	0	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	exon	18716787	18716909	.	-	.	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	intron	18716910	18717131	.	-	.	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	CDS	18717132	18717428	0.34	-	0	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	exon	18717132	18717428	.	-	.	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
Ledus.S1	AUGUSTUS	start_codon	18717426	18717428	.	-	0	transcript_id "Ledus.S1G207300.t1"; gene_id "Ledus.S1G207300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6850.t1 is derived from g4294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34640035	34641087	.	-	.	Ledus.S1G427100
Ledus.S1	AUGUSTUS	transcript	34640035	34641087	.	-	.	transcript_id "Ledus.S1G427100.t1"; gene_id "Ledus.S1G427100"
Ledus.S1	AUGUSTUS	stop_codon	34640032	34640034	.	-	0	transcript_id "Ledus.S1G427100.t1"; gene_id "Ledus.S1G427100"
Ledus.S1	AUGUSTUS	CDS	34640035	34641087	0.98	-	0	transcript_id "Ledus.S1G427100.t1"; gene_id "Ledus.S1G427100"
Ledus.S1	AUGUSTUS	exon	34640035	34641087	.	-	.	transcript_id "Ledus.S1G427100.t1"; gene_id "Ledus.S1G427100"
Ledus.S1	AUGUSTUS	start_codon	34641085	34641087	.	-	0	transcript_id "Ledus.S1G427100.t1"; gene_id "Ledus.S1G427100"
# This transcript jg9898.t2 is derived from g10928.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg9899.t1 is derived from g10929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11019276	11026563	.	-	.	Ledus.S3G137600
Ledus.S3	AUGUSTUS	transcript	11019276	11026563	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	stop_codon	11019273	11019275	.	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11019276	11019344	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11019276	11019344	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11019345	11019434	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11019435	11019557	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11019435	11019557	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11019558	11019646	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11019647	11019748	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11019647	11019748	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11019749	11019887	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11019888	11019956	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11019888	11019956	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11019957	11020048	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11020049	11020117	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11020049	11020117	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11020118	11020283	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11020284	11020358	0.95	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11020284	11020358	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11020359	11020462	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11020463	11020567	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11020463	11020567	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11020568	11020742	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11020743	11020844	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11020743	11020844	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11020845	11020930	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11020931	11022618	0.99	-	2	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11020931	11022618	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11022619	11022765	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11022766	11023057	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11022766	11023057	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11023058	11023189	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11023190	11023288	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11023190	11023288	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11023289	11023459	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11023460	11023577	1	-	1	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11023460	11023577	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11023578	11023692	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11023693	11023778	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11023693	11023778	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11023779	11023917	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11023918	11023986	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11023918	11023986	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11023987	11024073	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11024074	11024148	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11024074	11024148	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11024149	11024277	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11024278	11024375	1	-	2	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11024278	11024375	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11024376	11024743	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11024744	11024905	1	-	2	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11024744	11024905	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11024906	11025260	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025261	11025423	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025261	11025423	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11025424	11025549	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025550	11025618	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025550	11025618	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11025619	11025758	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025759	11025821	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025759	11025821	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11025822	11025940	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025941	11026096	1	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025941	11026096	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11026097	11026242	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11026243	11026563	0.54	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11026243	11026563	.	-	.	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	start_codon	11026561	11026563	.	-	0	transcript_id "Ledus.S3G137600.t1"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	transcript	11019276	11024992	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	stop_codon	11019273	11019275	.	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11019276	11019344	1	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11019276	11019344	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11019345	11019434	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11019435	11019557	1	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11019435	11019557	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11019558	11019646	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11019647	11019748	1	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11019647	11019748	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11019749	11019887	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11019888	11019956	1	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11019888	11019956	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11019957	11020048	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11020049	11020117	1	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11020049	11020117	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11020118	11020283	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11020284	11020358	0.81	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11020284	11020358	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11020359	11020462	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11020463	11020567	0.99	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11020463	11020567	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11020568	11020742	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11020743	11020844	1	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11020743	11020844	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11020845	11020930	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11020931	11022618	0.99	-	2	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11020931	11022618	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11022619	11022765	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11022766	11023057	1	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11022766	11023057	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11023058	11023189	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11023190	11023288	1	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11023190	11023288	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11023289	11023459	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11023460	11023577	1	-	1	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11023460	11023577	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11023578	11023692	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11023693	11023778	1	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11023693	11023778	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11023779	11023917	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11023918	11023986	1	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11023918	11023986	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11023987	11024073	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11024074	11024148	1	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11024074	11024148	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11024149	11024277	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11024278	11024375	1	-	2	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11024278	11024375	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11024376	11024743	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11024744	11024905	0.98	-	2	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11024744	11024905	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11024906	11024985	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11024986	11024992	0.67	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11024986	11024992	.	-	.	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	start_codon	11024990	11024992	.	-	0	transcript_id "Ledus.S3G137600.t2"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	transcript	11024930	11026563	.	-	.	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	stop_codon	11024927	11024929	.	-	0	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11024930	11024937	0.87	-	2	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11024930	11024937	.	-	.	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11024938	11025260	.	-	.	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025261	11025423	0.92	-	0	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025261	11025423	.	-	.	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11025424	11025549	.	-	.	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025550	11025618	0.94	-	0	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025550	11025618	.	-	.	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11025619	11025758	.	-	.	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025759	11025821	0.96	-	0	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025759	11025821	.	-	.	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11025822	11025940	.	-	.	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025941	11026096	1	-	0	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025941	11026096	.	-	.	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11026097	11026242	.	-	.	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11026243	11026563	0.49	-	0	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11026243	11026563	.	-	.	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	start_codon	11026561	11026563	.	-	0	transcript_id "Ledus.S3G137600.t3"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	transcript	11025040	11026563	.	-	.	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	stop_codon	11025037	11025039	.	-	0	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025040	11025056	0.67	-	2	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025040	11025056	.	-	.	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11025057	11025260	.	-	.	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025261	11025423	0.69	-	0	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025261	11025423	.	-	.	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11025424	11025549	.	-	.	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025550	11025618	0.99	-	0	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025550	11025618	.	-	.	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11025619	11025758	.	-	.	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025759	11025821	0.99	-	0	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025759	11025821	.	-	.	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11025822	11025940	.	-	.	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11025941	11026096	1	-	0	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11025941	11026096	.	-	.	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	intron	11026097	11026242	.	-	.	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	CDS	11026243	11026563	0.58	-	0	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	exon	11026243	11026563	.	-	.	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
Ledus.S3	AUGUSTUS	start_codon	11026561	11026563	.	-	0	transcript_id "Ledus.S3G137600.t4"; gene_id "Ledus.S3G137600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5305.t1 is derived from g2744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23221764	23222244	.	-	.	Ledus.S1G272600
Ledus.S1	AUGUSTUS	transcript	23221764	23222244	.	-	.	transcript_id "Ledus.S1G272600.t1"; gene_id "Ledus.S1G272600"
Ledus.S1	AUGUSTUS	stop_codon	23221761	23221763	.	-	0	transcript_id "Ledus.S1G272600.t1"; gene_id "Ledus.S1G272600"
Ledus.S1	AUGUSTUS	CDS	23221764	23221924	0.7	-	2	transcript_id "Ledus.S1G272600.t1"; gene_id "Ledus.S1G272600"
Ledus.S1	AUGUSTUS	exon	23221764	23221924	.	-	.	transcript_id "Ledus.S1G272600.t1"; gene_id "Ledus.S1G272600"
Ledus.S1	AUGUSTUS	intron	23221925	23222165	.	-	.	transcript_id "Ledus.S1G272600.t1"; gene_id "Ledus.S1G272600"
Ledus.S1	AUGUSTUS	CDS	23222166	23222244	0.31	-	0	transcript_id "Ledus.S1G272600.t1"; gene_id "Ledus.S1G272600"
Ledus.S1	AUGUSTUS	exon	23222166	23222244	.	-	.	transcript_id "Ledus.S1G272600.t1"; gene_id "Ledus.S1G272600"
Ledus.S1	AUGUSTUS	start_codon	23222242	23222244	.	-	0	transcript_id "Ledus.S1G272600.t1"; gene_id "Ledus.S1G272600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6456.t1 is derived from g3899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31350337	31353097	.	+	.	Ledus.S1G387700
Ledus.S1	AUGUSTUS	transcript	31350337	31353097	.	+	.	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	start_codon	31350337	31350339	.	+	0	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	CDS	31350337	31350789	0.66	+	0	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	exon	31350337	31350789	.	+	.	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	intron	31350790	31351052	.	+	.	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	CDS	31351053	31351280	1	+	0	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	exon	31351053	31351280	.	+	.	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	intron	31351281	31351448	.	+	.	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	CDS	31351449	31352209	1	+	0	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	exon	31351449	31352209	.	+	.	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	intron	31352210	31352319	.	+	.	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	CDS	31352320	31353097	1	+	1	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	exon	31352320	31353097	.	+	.	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
Ledus.S1	AUGUSTUS	stop_codon	31353098	31353100	.	+	0	transcript_id "Ledus.S1G387700.t1"; gene_id "Ledus.S1G387700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1679.t1 is derived from g8540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11806965	11810964	.	-	.	Ledus.S2G156100
Ledus.S2	AUGUSTUS	transcript	11806965	11810964	.	-	.	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	stop_codon	11806962	11806964	.	-	0	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	CDS	11806965	11810295	1	-	1	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	exon	11806965	11810295	.	-	.	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	intron	11810296	11810388	.	-	.	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	CDS	11810389	11810537	0.78	-	0	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	exon	11810389	11810537	.	-	.	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	intron	11810538	11810664	.	-	.	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	CDS	11810665	11810871	1	-	0	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	exon	11810665	11810871	.	-	.	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	intron	11810872	11810952	.	-	.	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	CDS	11810953	11810964	0.99	-	0	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	exon	11810953	11810964	.	-	.	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
Ledus.S2	AUGUSTUS	start_codon	11810962	11810964	.	-	0	transcript_id "Ledus.S2G156100.t1"; gene_id "Ledus.S2G156100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3944.t1 is derived from g1380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13674775	13679785	.	-	.	Ledus.S1G136500
Ledus.S1	AUGUSTUS	transcript	13674775	13679785	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	stop_codon	13674772	13674774	.	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13674775	13674971	0.83	-	2	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13674775	13674971	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13674972	13675064	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13675065	13675096	1	-	1	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13675065	13675096	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13675097	13675175	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13675176	13675270	0.97	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13675176	13675270	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13675271	13675350	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13675351	13675424	0.98	-	2	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13675351	13675424	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13675425	13675531	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13675532	13675709	0.99	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13675532	13675709	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13675710	13675793	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13675794	13675857	1	-	1	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13675794	13675857	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13675858	13675952	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13675953	13676015	0.44	-	1	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13675953	13676015	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13676016	13676156	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13676157	13676302	0.62	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13676157	13676302	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13676303	13676389	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13676390	13676524	0.98	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13676390	13676524	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13676525	13676611	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13676612	13676733	0.99	-	2	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13676612	13676733	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13676734	13676818	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13676819	13676978	0.95	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13676819	13676978	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13676979	13677383	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13677384	13677446	0.92	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13677384	13677446	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13677447	13677532	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13677533	13677640	1	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13677533	13677640	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13677641	13677731	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13677732	13677848	0.92	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13677732	13677848	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13677849	13677929	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13677930	13678062	0.95	-	1	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13677930	13678062	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13678063	13678255	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13678256	13678356	0.94	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13678256	13678356	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13678357	13678456	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13678457	13678593	0.92	-	2	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13678457	13678593	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13678594	13678678	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13678679	13678812	0.7	-	1	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13678679	13678812	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13678813	13678935	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13678936	13679085	0.92	-	1	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13678936	13679085	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13679086	13679175	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13679176	13679492	1	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13679176	13679492	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	intron	13679493	13679596	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	CDS	13679597	13679785	0.45	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	exon	13679597	13679785	.	-	.	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
Ledus.S1	AUGUSTUS	start_codon	13679783	13679785	.	-	0	transcript_id "Ledus.S1G136500.t1"; gene_id "Ledus.S1G136500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2487.t1 is derived from g9350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18444436	18446446	.	-	.	Ledus.S2G236900
Ledus.S2	AUGUSTUS	transcript	18444436	18446446	.	-	.	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	stop_codon	18444433	18444435	.	-	0	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	CDS	18444436	18444605	0.4	-	2	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	exon	18444436	18444605	.	-	.	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	intron	18444606	18444720	.	-	.	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	CDS	18444721	18444904	1	-	0	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	exon	18444721	18444904	.	-	.	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	intron	18444905	18445017	.	-	.	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	CDS	18445018	18445350	0.95	-	0	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	exon	18445018	18445350	.	-	.	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	intron	18445351	18445444	.	-	.	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	CDS	18445445	18445582	1	-	0	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	exon	18445445	18445582	.	-	.	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	intron	18445583	18445798	.	-	.	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	CDS	18445799	18445928	1	-	1	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	exon	18445799	18445928	.	-	.	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	intron	18445929	18446228	.	-	.	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	CDS	18446229	18446446	0.68	-	0	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	exon	18446229	18446446	.	-	.	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
Ledus.S2	AUGUSTUS	start_codon	18446444	18446446	.	-	0	transcript_id "Ledus.S2G236900.t1"; gene_id "Ledus.S2G236900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8484.t1 is derived from g13156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12151578	12151967	.	-	.	Ledus.S5G126200
Ledus.S5	AUGUSTUS	transcript	12151578	12151967	.	-	.	transcript_id "Ledus.S5G126200.t1"; gene_id "Ledus.S5G126200"
Ledus.S5	AUGUSTUS	stop_codon	12151575	12151577	.	-	0	transcript_id "Ledus.S5G126200.t1"; gene_id "Ledus.S5G126200"
Ledus.S5	AUGUSTUS	CDS	12151578	12151967	0.85	-	0	transcript_id "Ledus.S5G126200.t1"; gene_id "Ledus.S5G126200"
Ledus.S5	AUGUSTUS	exon	12151578	12151967	.	-	.	transcript_id "Ledus.S5G126200.t1"; gene_id "Ledus.S5G126200"
Ledus.S5	AUGUSTUS	start_codon	12151965	12151967	.	-	0	transcript_id "Ledus.S5G126200.t1"; gene_id "Ledus.S5G126200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4817.t1 is derived from g2255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19939701	19941284	.	-	.	Ledus.S1G223800
Ledus.S1	AUGUSTUS	transcript	19939701	19941284	.	-	.	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	stop_codon	19939698	19939700	.	-	0	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	CDS	19939701	19939881	0.77	-	1	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	exon	19939701	19939881	.	-	.	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	intron	19939882	19940160	.	-	.	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	CDS	19940161	19940240	0.77	-	0	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	exon	19940161	19940240	.	-	.	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	intron	19940241	19940509	.	-	.	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	CDS	19940510	19940930	0.64	-	1	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	exon	19940510	19940930	.	-	.	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	intron	19940931	19941279	.	-	.	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	CDS	19941280	19941284	0.8	-	0	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	exon	19941280	19941284	.	-	.	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
Ledus.S1	AUGUSTUS	start_codon	19941282	19941284	.	-	0	transcript_id "Ledus.S1G223800.t1"; gene_id "Ledus.S1G223800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8208.t1 is derived from g12879.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9889450	9890497	.	-	.	Ledus.S5G098600
Ledus.S5	AUGUSTUS	transcript	9889450	9890497	.	-	.	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	stop_codon	9889447	9889449	.	-	0	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	CDS	9889450	9889792	1	-	1	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	exon	9889450	9889792	.	-	.	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	intron	9889793	9889862	.	-	.	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	CDS	9889863	9889974	1	-	2	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	exon	9889863	9889974	.	-	.	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	intron	9889975	9890042	.	-	.	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	CDS	9890043	9890221	0.89	-	1	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	exon	9890043	9890221	.	-	.	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	intron	9890222	9890363	.	-	.	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	CDS	9890364	9890497	0.61	-	0	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	exon	9890364	9890497	.	-	.	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
Ledus.S5	AUGUSTUS	start_codon	9890495	9890497	.	-	0	transcript_id "Ledus.S5G098600.t1"; gene_id "Ledus.S5G098600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6956.t1 is derived from g6487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	321105	322006	.	-	.	Ledus.C7G001700
Ledus.C7	AUGUSTUS	transcript	321105	322006	.	-	.	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	stop_codon	321102	321104	.	-	0	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	CDS	321105	321245	0.69	-	0	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	exon	321105	321245	.	-	.	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	intron	321246	321413	.	-	.	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	CDS	321414	321447	0.65	-	1	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	exon	321414	321447	.	-	.	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	intron	321448	321527	.	-	.	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	CDS	321528	321617	0.64	-	1	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	exon	321528	321617	.	-	.	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	intron	321618	321762	.	-	.	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	CDS	321763	321831	0.52	-	1	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	exon	321763	321831	.	-	.	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	intron	321832	321980	.	-	.	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	CDS	321981	322006	0.45	-	0	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	exon	321981	322006	.	-	.	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
Ledus.C7	AUGUSTUS	start_codon	322004	322006	.	-	0	transcript_id "Ledus.C7G001700.t1"; gene_id "Ledus.C7G001700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7605.t1 is derived from g12276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4315682	4316832	.	+	.	Ledus.S5G038300
Ledus.S5	AUGUSTUS	transcript	4315682	4316832	.	+	.	transcript_id "Ledus.S5G038300.t1"; gene_id "Ledus.S5G038300"
Ledus.S5	AUGUSTUS	start_codon	4315682	4315684	.	+	0	transcript_id "Ledus.S5G038300.t1"; gene_id "Ledus.S5G038300"
Ledus.S5	AUGUSTUS	CDS	4315682	4316206	0.38	+	0	transcript_id "Ledus.S5G038300.t1"; gene_id "Ledus.S5G038300"
Ledus.S5	AUGUSTUS	exon	4315682	4316206	.	+	.	transcript_id "Ledus.S5G038300.t1"; gene_id "Ledus.S5G038300"
Ledus.S5	AUGUSTUS	intron	4316207	4316670	.	+	.	transcript_id "Ledus.S5G038300.t1"; gene_id "Ledus.S5G038300"
Ledus.S5	AUGUSTUS	CDS	4316671	4316832	0.57	+	0	transcript_id "Ledus.S5G038300.t1"; gene_id "Ledus.S5G038300"
Ledus.S5	AUGUSTUS	exon	4316671	4316832	.	+	.	transcript_id "Ledus.S5G038300.t1"; gene_id "Ledus.S5G038300"
Ledus.S5	AUGUSTUS	stop_codon	4316833	4316835	.	+	0	transcript_id "Ledus.S5G038300.t1"; gene_id "Ledus.S5G038300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10082.t1 is derived from g11112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12558428	12560951	.	-	.	Ledus.S3G155900
Ledus.S3	AUGUSTUS	transcript	12558428	12560951	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	stop_codon	12558425	12558427	.	-	0	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12558428	12558550	1	-	0	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12558428	12558550	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12558551	12558647	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12558648	12558716	1	-	0	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12558648	12558716	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12558717	12558802	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12558803	12558943	0.54	-	0	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12558803	12558943	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12558944	12559048	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12559049	12559324	0.3	-	0	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12559049	12559324	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12559325	12559585	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12559586	12559636	0.47	-	0	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12559586	12559636	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12559637	12559878	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12559879	12559987	0.71	-	1	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12559879	12559987	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12559988	12560164	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560165	12560259	1	-	0	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560165	12560259	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12560260	12560350	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560351	12560398	1	-	0	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560351	12560398	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12560399	12560538	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560539	12560584	1	-	1	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560539	12560584	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12560585	12560679	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560680	12560705	1	-	0	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560680	12560705	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12560706	12560867	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560868	12560951	1	-	0	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560868	12560951	.	-	.	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	start_codon	12560949	12560951	.	-	0	transcript_id "Ledus.S3G155900.t1"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	transcript	12558428	12560951	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	stop_codon	12558425	12558427	.	-	0	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12558428	12558550	1	-	0	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12558428	12558550	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12558551	12558647	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12558648	12558716	1	-	0	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12558648	12558716	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12558717	12558802	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12558803	12558943	0.58	-	0	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12558803	12558943	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12558944	12559048	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12559049	12559324	0.31	-	0	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12559049	12559324	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12559325	12559585	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12559586	12559636	0.38	-	0	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12559586	12559636	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12559637	12559878	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12559879	12559987	0.72	-	1	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12559879	12559987	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12559988	12560164	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560165	12560259	1	-	0	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560165	12560259	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12560260	12560350	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560351	12560398	1	-	0	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560351	12560398	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12560399	12560538	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560539	12560581	1	-	1	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560539	12560581	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12560582	12560679	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560680	12560705	1	-	0	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560680	12560705	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12560706	12560867	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560868	12560951	0.99	-	0	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560868	12560951	.	-	.	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	start_codon	12560949	12560951	.	-	0	transcript_id "Ledus.S3G155900.t2"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	transcript	12558428	12560951	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	stop_codon	12558425	12558427	.	-	0	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12558428	12558550	1	-	0	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12558428	12558550	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12558551	12558647	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12558648	12558716	1	-	0	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12558648	12558716	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12558717	12558802	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12558803	12558943	0.63	-	0	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12558803	12558943	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12558944	12559048	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12559049	12559324	0.34	-	0	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12559049	12559324	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12559325	12559585	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12559586	12559636	0.36	-	0	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12559586	12559636	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12559637	12559878	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12559879	12559987	0.61	-	1	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12559879	12559987	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12559988	12560164	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560165	12560259	1	-	0	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560165	12560259	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12560260	12560350	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560351	12560398	0.98	-	0	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560351	12560398	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12560399	12560508	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560509	12560584	0.6	-	1	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560509	12560584	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12560585	12560679	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560680	12560705	1	-	0	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560680	12560705	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	intron	12560706	12560867	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	CDS	12560868	12560951	0.99	-	0	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	exon	12560868	12560951	.	-	.	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
Ledus.S3	AUGUSTUS	start_codon	12560949	12560951	.	-	0	transcript_id "Ledus.S3G155900.t3"; gene_id "Ledus.S3G155900"
# This transcript jg12544.t2 is derived from g6166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12545.t1 is derived from g6167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12820389	12822164	.	+	.	Ledus.S4G170100
Ledus.S4	AUGUSTUS	transcript	12820389	12822164	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	start_codon	12820389	12820391	.	+	0	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	CDS	12820389	12820580	0.36	+	0	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	exon	12820389	12820580	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	intron	12820581	12820675	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	CDS	12820676	12820727	1	+	0	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	exon	12820676	12820727	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	intron	12820728	12820808	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	CDS	12820809	12820937	1	+	2	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	exon	12820809	12820937	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	intron	12820938	12821110	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	CDS	12821111	12821237	1	+	2	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	exon	12821111	12821237	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	intron	12821238	12821417	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	CDS	12821418	12821601	0.88	+	1	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	exon	12821418	12821601	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	intron	12821602	12821703	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	CDS	12821704	12821817	1	+	0	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	exon	12821704	12821817	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	intron	12821818	12821903	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	CDS	12821904	12822164	0.93	+	0	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	exon	12821904	12822164	.	+	.	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
Ledus.S4	AUGUSTUS	stop_codon	12822165	12822167	.	+	0	transcript_id "Ledus.S4G170100.t1"; gene_id "Ledus.S4G170100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8732.t1 is derived from g9762.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1672780	1675948	.	+	.	Ledus.S3G020900
Ledus.S3	AUGUSTUS	transcript	1672780	1675948	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	start_codon	1672780	1672782	.	+	0	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	CDS	1672780	1672930	0.82	+	0	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	exon	1672780	1672930	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	intron	1672931	1673116	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	CDS	1673117	1673130	0.99	+	2	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	exon	1673117	1673130	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	intron	1673131	1673356	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	CDS	1673357	1673450	1	+	0	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	exon	1673357	1673450	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	intron	1673451	1673577	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	CDS	1673578	1673825	1	+	2	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	exon	1673578	1673825	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	intron	1673826	1673921	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	CDS	1673922	1674038	1	+	0	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	exon	1673922	1674038	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	intron	1674039	1674194	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	CDS	1674195	1674351	1	+	0	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	exon	1674195	1674351	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	intron	1674352	1674463	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	CDS	1674464	1674603	0.96	+	2	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	exon	1674464	1674603	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	intron	1674604	1674709	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	CDS	1674710	1674745	1	+	0	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	exon	1674710	1674745	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	intron	1674746	1674937	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	CDS	1674938	1675948	1	+	0	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	exon	1674938	1675948	.	+	.	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
Ledus.S3	AUGUSTUS	stop_codon	1675949	1675951	.	+	0	transcript_id "Ledus.S3G020900.t1"; gene_id "Ledus.S3G020900"
# This transcript jg10133.t2 is derived from g11163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10134.t1 is derived from g11164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12973164	12977187	.	+	.	Ledus.S3G161100
Ledus.S3	AUGUSTUS	transcript	12973164	12977187	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	start_codon	12973164	12973166	.	+	0	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	CDS	12973164	12973403	0.36	+	0	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	exon	12973164	12973403	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	intron	12973404	12973713	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	CDS	12973714	12973960	0.39	+	0	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	exon	12973714	12973960	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	intron	12973961	12974304	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	CDS	12974305	12974396	1	+	2	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	exon	12974305	12974396	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	intron	12974397	12974487	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	CDS	12974488	12974606	1	+	0	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	exon	12974488	12974606	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	intron	12974607	12974763	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	CDS	12974764	12974899	1	+	1	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	exon	12974764	12974899	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	intron	12974900	12975025	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	CDS	12975026	12975077	1	+	0	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	exon	12975026	12975077	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	intron	12975078	12975342	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	CDS	12975343	12975443	1	+	2	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	exon	12975343	12975443	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	intron	12975444	12975608	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	CDS	12975609	12975791	1	+	0	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	exon	12975609	12975791	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	intron	12975792	12976005	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	CDS	12976006	12976163	1	+	0	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	exon	12976006	12976163	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	intron	12976164	12976327	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	CDS	12976328	12976382	1	+	1	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	exon	12976328	12976382	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	intron	12976383	12976490	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	CDS	12976491	12976544	1	+	0	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	exon	12976491	12976544	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	intron	12976545	12976656	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	CDS	12976657	12977187	0.99	+	0	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	exon	12976657	12977187	.	+	.	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
Ledus.S3	AUGUSTUS	stop_codon	12977188	12977190	.	+	0	transcript_id "Ledus.S3G161100.t1"; gene_id "Ledus.S3G161100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12139.t1 is derived from g5758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9778403	9779144	.	+	.	Ledus.S4G129500
Ledus.S4	AUGUSTUS	transcript	9778403	9779144	.	+	.	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	start_codon	9778403	9778405	.	+	0	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	CDS	9778403	9778405	0.92	+	0	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	exon	9778403	9778405	.	+	.	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	intron	9778406	9778525	.	+	.	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	CDS	9778526	9778607	0.9	+	0	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	exon	9778526	9778607	.	+	.	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	intron	9778608	9778710	.	+	.	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	CDS	9778711	9778782	0.95	+	2	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	exon	9778711	9778782	.	+	.	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	intron	9778783	9778900	.	+	.	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	CDS	9778901	9778953	0.94	+	2	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	exon	9778901	9778953	.	+	.	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	intron	9778954	9779060	.	+	.	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	CDS	9779061	9779144	0.93	+	0	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	exon	9779061	9779144	.	+	.	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
Ledus.S4	AUGUSTUS	stop_codon	9779145	9779147	.	+	0	transcript_id "Ledus.S4G129500.t1"; gene_id "Ledus.S4G129500"
# This transcript jg12713.t2 is derived from g6335.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12714.t1 is derived from g6336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14043310	14044963	.	+	.	Ledus.S4G187000
Ledus.S4	AUGUSTUS	transcript	14043310	14044963	.	+	.	transcript_id "Ledus.S4G187000.t1"; gene_id "Ledus.S4G187000"
Ledus.S4	AUGUSTUS	start_codon	14043310	14043312	.	+	0	transcript_id "Ledus.S4G187000.t1"; gene_id "Ledus.S4G187000"
Ledus.S4	AUGUSTUS	CDS	14043310	14044083	0.98	+	0	transcript_id "Ledus.S4G187000.t1"; gene_id "Ledus.S4G187000"
Ledus.S4	AUGUSTUS	exon	14043310	14044083	.	+	.	transcript_id "Ledus.S4G187000.t1"; gene_id "Ledus.S4G187000"
Ledus.S4	AUGUSTUS	intron	14044084	14044171	.	+	.	transcript_id "Ledus.S4G187000.t1"; gene_id "Ledus.S4G187000"
Ledus.S4	AUGUSTUS	CDS	14044172	14044521	1	+	0	transcript_id "Ledus.S4G187000.t1"; gene_id "Ledus.S4G187000"
Ledus.S4	AUGUSTUS	exon	14044172	14044521	.	+	.	transcript_id "Ledus.S4G187000.t1"; gene_id "Ledus.S4G187000"
Ledus.S4	AUGUSTUS	intron	14044522	14044617	.	+	.	transcript_id "Ledus.S4G187000.t1"; gene_id "Ledus.S4G187000"
Ledus.S4	AUGUSTUS	CDS	14044618	14044963	1	+	1	transcript_id "Ledus.S4G187000.t1"; gene_id "Ledus.S4G187000"
Ledus.S4	AUGUSTUS	exon	14044618	14044963	.	+	.	transcript_id "Ledus.S4G187000.t1"; gene_id "Ledus.S4G187000"
Ledus.S4	AUGUSTUS	stop_codon	14044964	14044966	.	+	0	transcript_id "Ledus.S4G187000.t1"; gene_id "Ledus.S4G187000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12261.t1 is derived from g5881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10694306	10696878	.	-	.	Ledus.S4G141700
Ledus.S4	AUGUSTUS	transcript	10694306	10696878	.	-	.	transcript_id "Ledus.S4G141700.t1"; gene_id "Ledus.S4G141700"
Ledus.S4	AUGUSTUS	stop_codon	10694303	10694305	.	-	0	transcript_id "Ledus.S4G141700.t1"; gene_id "Ledus.S4G141700"
Ledus.S4	AUGUSTUS	CDS	10694306	10696484	0.97	-	1	transcript_id "Ledus.S4G141700.t1"; gene_id "Ledus.S4G141700"
Ledus.S4	AUGUSTUS	exon	10694306	10696484	.	-	.	transcript_id "Ledus.S4G141700.t1"; gene_id "Ledus.S4G141700"
Ledus.S4	AUGUSTUS	intron	10696485	10696686	.	-	.	transcript_id "Ledus.S4G141700.t1"; gene_id "Ledus.S4G141700"
Ledus.S4	AUGUSTUS	CDS	10696687	10696768	1	-	2	transcript_id "Ledus.S4G141700.t1"; gene_id "Ledus.S4G141700"
Ledus.S4	AUGUSTUS	exon	10696687	10696768	.	-	.	transcript_id "Ledus.S4G141700.t1"; gene_id "Ledus.S4G141700"
Ledus.S4	AUGUSTUS	intron	10696769	10696841	.	-	.	transcript_id "Ledus.S4G141700.t1"; gene_id "Ledus.S4G141700"
Ledus.S4	AUGUSTUS	CDS	10696842	10696878	0.99	-	0	transcript_id "Ledus.S4G141700.t1"; gene_id "Ledus.S4G141700"
Ledus.S4	AUGUSTUS	exon	10696842	10696878	.	-	.	transcript_id "Ledus.S4G141700.t1"; gene_id "Ledus.S4G141700"
Ledus.S4	AUGUSTUS	start_codon	10696876	10696878	.	-	0	transcript_id "Ledus.S4G141700.t1"; gene_id "Ledus.S4G141700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2256.t1 is derived from g9119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16588371	16588910	.	-	.	Ledus.S2G213800
Ledus.S2	AUGUSTUS	transcript	16588371	16588910	.	-	.	transcript_id "Ledus.S2G213800.t1"; gene_id "Ledus.S2G213800"
Ledus.S2	AUGUSTUS	stop_codon	16588368	16588370	.	-	0	transcript_id "Ledus.S2G213800.t1"; gene_id "Ledus.S2G213800"
Ledus.S2	AUGUSTUS	CDS	16588371	16588661	0.86	-	0	transcript_id "Ledus.S2G213800.t1"; gene_id "Ledus.S2G213800"
Ledus.S2	AUGUSTUS	exon	16588371	16588661	.	-	.	transcript_id "Ledus.S2G213800.t1"; gene_id "Ledus.S2G213800"
Ledus.S2	AUGUSTUS	intron	16588662	16588886	.	-	.	transcript_id "Ledus.S2G213800.t1"; gene_id "Ledus.S2G213800"
Ledus.S2	AUGUSTUS	CDS	16588887	16588910	0.6	-	0	transcript_id "Ledus.S2G213800.t1"; gene_id "Ledus.S2G213800"
Ledus.S2	AUGUSTUS	exon	16588887	16588910	.	-	.	transcript_id "Ledus.S2G213800.t1"; gene_id "Ledus.S2G213800"
Ledus.S2	AUGUSTUS	start_codon	16588908	16588910	.	-	0	transcript_id "Ledus.S2G213800.t1"; gene_id "Ledus.S2G213800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9596.t1 is derived from g10626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8198349	8200799	.	-	.	Ledus.S3G107300
Ledus.S3	AUGUSTUS	transcript	8198349	8200799	.	-	.	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	stop_codon	8198346	8198348	.	-	0	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	CDS	8198349	8198787	0.98	-	1	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	exon	8198349	8198787	.	-	.	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	intron	8198788	8198874	.	-	.	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	CDS	8198875	8199062	0.96	-	0	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	exon	8198875	8199062	.	-	.	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	intron	8199063	8199156	.	-	.	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	CDS	8199157	8199944	0.99	-	2	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	exon	8199157	8199944	.	-	.	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	intron	8199945	8200030	.	-	.	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	CDS	8200031	8200597	0.82	-	2	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	exon	8200031	8200597	.	-	.	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	intron	8200598	8200714	.	-	.	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	CDS	8200715	8200799	0.82	-	0	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	exon	8200715	8200799	.	-	.	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
Ledus.S3	AUGUSTUS	start_codon	8200797	8200799	.	-	0	transcript_id "Ledus.S3G107300.t1"; gene_id "Ledus.S3G107300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3359.t1 is derived from g794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7836307	7841178	.	-	.	Ledus.S1G078000
Ledus.S1	AUGUSTUS	transcript	7836307	7841178	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	stop_codon	7836304	7836306	.	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7836307	7836399	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7836307	7836399	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7836400	7836479	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7836480	7836551	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7836480	7836551	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7836552	7836630	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7836631	7836702	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7836631	7836702	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7836703	7836784	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7836785	7837006	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7836785	7837006	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7837007	7837156	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7837157	7837249	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7837157	7837249	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7837250	7837335	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7837336	7837428	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7837336	7837428	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7837429	7837531	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7837532	7837618	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7837532	7837618	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7837619	7837771	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7837772	7837804	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7837772	7837804	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7837805	7838049	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7838050	7838144	1	-	2	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7838050	7838144	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7838145	7838266	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7838267	7838351	0.99	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7838267	7838351	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7838352	7838528	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7838529	7838615	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7838529	7838615	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7838616	7838737	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7838738	7838834	1	-	1	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7838738	7838834	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7838835	7839080	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7839081	7839169	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7839081	7839169	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7839170	7839348	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7839349	7839438	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7839349	7839438	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7839439	7839581	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7839582	7839710	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7839582	7839710	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7839711	7839811	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7839812	7839886	0.94	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7839812	7839886	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7839887	7840008	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7840009	7840098	0.99	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7840009	7840098	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7840099	7840214	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7840215	7840274	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7840215	7840274	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7840275	7840473	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7840474	7840599	1	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7840474	7840599	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7840600	7840735	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7840736	7840847	0.98	-	1	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7840736	7840847	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	intron	7840848	7840963	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	CDS	7840964	7841178	0.99	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	exon	7840964	7841178	.	-	.	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
Ledus.S1	AUGUSTUS	start_codon	7841176	7841178	.	-	0	transcript_id "Ledus.S1G078000.t1"; gene_id "Ledus.S1G078000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8757.t1 is derived from g9787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1857666	1860999	.	+	.	Ledus.S3G023400
Ledus.S3	AUGUSTUS	transcript	1857666	1860999	.	+	.	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	start_codon	1857666	1857668	.	+	0	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	CDS	1857666	1857818	0.97	+	0	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	exon	1857666	1857818	.	+	.	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	intron	1857819	1858015	.	+	.	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	CDS	1858016	1858771	1	+	0	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	exon	1858016	1858771	.	+	.	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	intron	1858772	1858893	.	+	.	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	CDS	1858894	1860539	0.87	+	0	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	exon	1858894	1860539	.	+	.	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	intron	1860540	1860653	.	+	.	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	CDS	1860654	1860999	1	+	1	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	exon	1860654	1860999	.	+	.	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
Ledus.S3	AUGUSTUS	stop_codon	1861000	1861002	.	+	0	transcript_id "Ledus.S3G023400.t1"; gene_id "Ledus.S3G023400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8059.t1 is derived from g12730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8965124	8966525	.	-	.	Ledus.S5G083700
Ledus.S5	AUGUSTUS	transcript	8965124	8966525	.	-	.	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	stop_codon	8965121	8965123	.	-	0	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	CDS	8965124	8965268	1	-	1	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	exon	8965124	8965268	.	-	.	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	intron	8965269	8965347	.	-	.	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	CDS	8965348	8965583	1	-	0	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	exon	8965348	8965583	.	-	.	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	intron	8965584	8965654	.	-	.	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	CDS	8965655	8965861	1	-	0	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	exon	8965655	8965861	.	-	.	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	intron	8965862	8965936	.	-	.	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	CDS	8965937	8966105	1	-	1	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	exon	8965937	8966105	.	-	.	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	intron	8966106	8966181	.	-	.	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	CDS	8966182	8966525	0.97	-	0	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	exon	8966182	8966525	.	-	.	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
Ledus.S5	AUGUSTUS	start_codon	8966523	8966525	.	-	0	transcript_id "Ledus.S5G083700.t1"; gene_id "Ledus.S5G083700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3301.t1 is derived from g736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7378092	7380080	.	-	.	Ledus.S1G072200
Ledus.S1	AUGUSTUS	transcript	7378092	7380080	.	-	.	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	stop_codon	7378089	7378091	.	-	0	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	CDS	7378092	7378382	1	-	0	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	exon	7378092	7378382	.	-	.	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	intron	7378383	7378890	.	-	.	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	CDS	7378891	7378947	1	-	0	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	exon	7378891	7378947	.	-	.	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	intron	7378948	7379041	.	-	.	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	CDS	7379042	7379242	0.99	-	0	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	exon	7379042	7379242	.	-	.	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	intron	7379243	7379345	.	-	.	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	CDS	7379346	7380080	0.87	-	0	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	exon	7379346	7380080	.	-	.	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
Ledus.S1	AUGUSTUS	start_codon	7380078	7380080	.	-	0	transcript_id "Ledus.S1G072200.t1"; gene_id "Ledus.S1G072200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2058.t1 is derived from g8921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14381976	14388899	.	-	.	Ledus.S2G194000
Ledus.S2	AUGUSTUS	transcript	14381976	14388899	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	stop_codon	14381973	14381975	.	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14381976	14382359	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14381976	14382359	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14382360	14382444	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14382445	14382690	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14382445	14382690	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14382691	14382775	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14382776	14382988	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14382776	14382988	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14382989	14383096	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14383097	14383240	0.96	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14383097	14383240	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14383241	14383408	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14383409	14383552	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14383409	14383552	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14383553	14383646	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14383647	14383722	1	-	1	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14383647	14383722	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14383723	14383805	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14383806	14383909	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14383806	14383909	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14383910	14384059	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14384060	14384134	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14384060	14384134	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14384135	14384280	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14384281	14384448	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14384281	14384448	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14384449	14384542	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14384543	14384707	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14384543	14384707	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14384708	14384849	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14384850	14384890	1	-	2	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14384850	14384890	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14384891	14385064	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14385065	14385091	1	-	2	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14385065	14385091	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14385092	14385267	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14385268	14385347	1	-	1	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14385268	14385347	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14385348	14385464	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14385465	14385592	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14385465	14385592	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14385593	14385732	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14385733	14385845	1	-	2	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14385733	14385845	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14385846	14386101	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14386102	14386189	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14386102	14386189	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14386190	14386278	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14386279	14386396	0.99	-	1	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14386279	14386396	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14386397	14386606	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14386607	14386680	0.99	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14386607	14386680	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14386681	14386796	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14386797	14386849	1	-	2	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14386797	14386849	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14386850	14387002	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14387003	14387183	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14387003	14387183	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14387184	14387336	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14387337	14387382	1	-	1	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14387337	14387382	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14387383	14387477	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14387478	14387555	1	-	1	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14387478	14387555	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14387556	14387701	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14387702	14387772	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14387702	14387772	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14387773	14387881	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14387882	14387945	1	-	1	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14387882	14387945	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14387946	14388052	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14388053	14388129	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14388053	14388129	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14388130	14388310	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14388311	14388430	1	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14388311	14388430	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14388431	14388504	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14388505	14388575	0.58	-	2	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14388505	14388575	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14388576	14388760	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14388761	14388899	0.58	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14388761	14388899	.	-	.	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	start_codon	14388897	14388899	.	-	0	transcript_id "Ledus.S2G194000.t1"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	transcript	14386346	14388899	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	stop_codon	14386343	14386345	.	-	0	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14386346	14386346	0.95	-	1	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14386346	14386346	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14386347	14386606	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14386607	14386680	0.95	-	0	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14386607	14386680	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14386681	14386796	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14386797	14386849	1	-	2	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14386797	14386849	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14386850	14387002	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14387003	14387183	1	-	0	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14387003	14387183	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14387184	14387336	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14387337	14387382	1	-	1	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14387337	14387382	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14387383	14387477	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14387478	14387555	1	-	1	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14387478	14387555	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14387556	14387701	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14387702	14387772	1	-	0	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14387702	14387772	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14387773	14387881	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14387882	14387945	1	-	1	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14387882	14387945	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14387946	14388052	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14388053	14388129	1	-	0	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14388053	14388129	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14388130	14388310	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14388311	14388430	1	-	0	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14388311	14388430	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14388431	14388504	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14388505	14388575	0.6	-	2	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14388505	14388575	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	intron	14388576	14388760	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	CDS	14388761	14388899	0.61	-	0	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	exon	14388761	14388899	.	-	.	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
Ledus.S2	AUGUSTUS	start_codon	14388897	14388899	.	-	0	transcript_id "Ledus.S2G194000.t2"; gene_id "Ledus.S2G194000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5396.t1 is derived from g2835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23984932	23985848	.	-	.	Ledus.S1G281700
Ledus.S1	AUGUSTUS	transcript	23984932	23985848	.	-	.	transcript_id "Ledus.S1G281700.t1"; gene_id "Ledus.S1G281700"
Ledus.S1	AUGUSTUS	stop_codon	23984929	23984931	.	-	0	transcript_id "Ledus.S1G281700.t1"; gene_id "Ledus.S1G281700"
Ledus.S1	AUGUSTUS	CDS	23984932	23984999	0.99	-	2	transcript_id "Ledus.S1G281700.t1"; gene_id "Ledus.S1G281700"
Ledus.S1	AUGUSTUS	exon	23984932	23984999	.	-	.	transcript_id "Ledus.S1G281700.t1"; gene_id "Ledus.S1G281700"
Ledus.S1	AUGUSTUS	intron	23985000	23985088	.	-	.	transcript_id "Ledus.S1G281700.t1"; gene_id "Ledus.S1G281700"
Ledus.S1	AUGUSTUS	CDS	23985089	23985347	0.97	-	0	transcript_id "Ledus.S1G281700.t1"; gene_id "Ledus.S1G281700"
Ledus.S1	AUGUSTUS	exon	23985089	23985347	.	-	.	transcript_id "Ledus.S1G281700.t1"; gene_id "Ledus.S1G281700"
Ledus.S1	AUGUSTUS	intron	23985348	23985437	.	-	.	transcript_id "Ledus.S1G281700.t1"; gene_id "Ledus.S1G281700"
Ledus.S1	AUGUSTUS	CDS	23985438	23985848	0.96	-	0	transcript_id "Ledus.S1G281700.t1"; gene_id "Ledus.S1G281700"
Ledus.S1	AUGUSTUS	exon	23985438	23985848	.	-	.	transcript_id "Ledus.S1G281700.t1"; gene_id "Ledus.S1G281700"
Ledus.S1	AUGUSTUS	start_codon	23985846	23985848	.	-	0	transcript_id "Ledus.S1G281700.t1"; gene_id "Ledus.S1G281700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3641.t1 is derived from g1077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10344435	10346783	.	-	.	Ledus.S1G106200
Ledus.S1	AUGUSTUS	transcript	10344435	10346783	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	stop_codon	10344432	10344434	.	-	0	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	CDS	10344435	10344481	0.85	-	2	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	exon	10344435	10344481	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	intron	10344482	10344567	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	CDS	10344568	10345057	1	-	0	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	exon	10344568	10345057	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	intron	10345058	10345167	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	CDS	10345168	10345250	0.99	-	2	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	exon	10345168	10345250	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	intron	10345251	10345453	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	CDS	10345454	10345568	1	-	0	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	exon	10345454	10345568	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	intron	10345569	10345662	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	CDS	10345663	10345760	0.89	-	2	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	exon	10345663	10345760	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	intron	10345761	10345868	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	CDS	10345869	10345916	0.99	-	2	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	exon	10345869	10345916	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	intron	10345917	10345995	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	CDS	10345996	10346098	1	-	0	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	exon	10345996	10346098	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	intron	10346099	10346202	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	CDS	10346203	10346325	0.97	-	0	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	exon	10346203	10346325	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	intron	10346326	10346717	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	CDS	10346718	10346783	0.99	-	0	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	exon	10346718	10346783	.	-	.	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
Ledus.S1	AUGUSTUS	start_codon	10346781	10346783	.	-	0	transcript_id "Ledus.S1G106200.t1"; gene_id "Ledus.S1G106200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8999.t1 is derived from g10029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3764676	3768120	.	-	.	Ledus.S3G047600
Ledus.S3	AUGUSTUS	transcript	3764676	3768017	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	stop_codon	3764673	3764675	.	-	0	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3764676	3764989	1	-	2	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3764676	3764989	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3764990	3765067	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3765068	3765173	1	-	0	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3765068	3765173	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3765174	3765265	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3765266	3765374	0.69	-	1	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3765266	3765374	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3765375	3765486	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3765487	3765665	1	-	0	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3765487	3765665	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3765666	3765740	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3765741	3765875	0.99	-	0	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3765741	3765875	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3765876	3765979	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3765980	3766038	1	-	2	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3765980	3766038	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3766039	3766211	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3766212	3766312	1	-	1	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3766212	3766312	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3766313	3766416	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3766417	3766580	1	-	0	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3766417	3766580	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3766581	3766715	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3766716	3766780	1	-	2	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3766716	3766780	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3766781	3766865	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3766866	3767040	1	-	0	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3766866	3767040	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3767041	3767150	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3767151	3767405	1	-	0	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3767151	3767405	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3767406	3767491	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3767492	3767651	1	-	1	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3767492	3767651	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3767652	3767747	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3767748	3767806	1	-	0	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3767748	3767806	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3767807	3767975	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3767976	3768017	0.94	-	0	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3767976	3768017	.	-	.	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	start_codon	3768015	3768017	.	-	0	transcript_id "Ledus.S3G047600.t1"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	transcript	3764676	3768120	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	stop_codon	3764673	3764675	.	-	0	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3764676	3764989	1	-	2	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3764676	3764989	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3764990	3765067	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3765068	3765173	1	-	0	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3765068	3765173	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3765174	3765265	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3765266	3765374	0.67	-	1	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3765266	3765374	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3765375	3765486	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3765487	3765665	1	-	0	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3765487	3765665	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3765666	3765740	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3765741	3765875	0.99	-	0	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3765741	3765875	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3765876	3765979	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3765980	3766038	1	-	2	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3765980	3766038	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3766039	3766211	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3766212	3766312	1	-	1	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3766212	3766312	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3766313	3766416	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3766417	3766580	1	-	0	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3766417	3766580	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3766581	3766715	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3766716	3766780	1	-	2	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3766716	3766780	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3766781	3766865	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3766866	3767040	1	-	0	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3766866	3767040	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3767041	3767150	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3767151	3767405	1	-	0	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3767151	3767405	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3767406	3767491	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3767492	3767651	1	-	1	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3767492	3767651	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3767652	3767747	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3767748	3767806	1	-	0	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3767748	3767806	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3767807	3767905	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3767906	3767935	0.99	-	0	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3767906	3767935	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	intron	3767936	3768075	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	CDS	3768076	3768120	0.98	-	0	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	exon	3768076	3768120	.	-	.	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
Ledus.S3	AUGUSTUS	start_codon	3768118	3768120	.	-	0	transcript_id "Ledus.S3G047600.t2"; gene_id "Ledus.S3G047600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7797.t1 is derived from g12468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6811721	6812144	.	+	.	Ledus.S5G057500
Ledus.S5	AUGUSTUS	transcript	6811721	6812144	.	+	.	transcript_id "Ledus.S5G057500.t1"; gene_id "Ledus.S5G057500"
Ledus.S5	AUGUSTUS	start_codon	6811721	6811723	.	+	0	transcript_id "Ledus.S5G057500.t1"; gene_id "Ledus.S5G057500"
Ledus.S5	AUGUSTUS	CDS	6811721	6811727	0.95	+	0	transcript_id "Ledus.S5G057500.t1"; gene_id "Ledus.S5G057500"
Ledus.S5	AUGUSTUS	exon	6811721	6811727	.	+	.	transcript_id "Ledus.S5G057500.t1"; gene_id "Ledus.S5G057500"
Ledus.S5	AUGUSTUS	intron	6811728	6811827	.	+	.	transcript_id "Ledus.S5G057500.t1"; gene_id "Ledus.S5G057500"
Ledus.S5	AUGUSTUS	CDS	6811828	6812144	0.89	+	2	transcript_id "Ledus.S5G057500.t1"; gene_id "Ledus.S5G057500"
Ledus.S5	AUGUSTUS	exon	6811828	6812144	.	+	.	transcript_id "Ledus.S5G057500.t1"; gene_id "Ledus.S5G057500"
Ledus.S5	AUGUSTUS	stop_codon	6812145	6812147	.	+	0	transcript_id "Ledus.S5G057500.t1"; gene_id "Ledus.S5G057500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10334.t1 is derived from g11364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14293694	14293939	.	+	.	Ledus.S3G181100
Ledus.S3	AUGUSTUS	transcript	14293694	14293939	.	+	.	transcript_id "Ledus.S3G181100.t1"; gene_id "Ledus.S3G181100"
Ledus.S3	AUGUSTUS	start_codon	14293694	14293696	.	+	0	transcript_id "Ledus.S3G181100.t1"; gene_id "Ledus.S3G181100"
Ledus.S3	AUGUSTUS	CDS	14293694	14293939	0.56	+	0	transcript_id "Ledus.S3G181100.t1"; gene_id "Ledus.S3G181100"
Ledus.S3	AUGUSTUS	exon	14293694	14293939	.	+	.	transcript_id "Ledus.S3G181100.t1"; gene_id "Ledus.S3G181100"
Ledus.S3	AUGUSTUS	stop_codon	14293940	14293942	.	+	0	transcript_id "Ledus.S3G181100.t1"; gene_id "Ledus.S3G181100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5374.t1 is derived from g2813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23864075	23864419	.	-	.	Ledus.S1G279500
Ledus.S1	AUGUSTUS	transcript	23864075	23864419	.	-	.	transcript_id "Ledus.S1G279500.t1"; gene_id "Ledus.S1G279500"
Ledus.S1	AUGUSTUS	stop_codon	23864072	23864074	.	-	0	transcript_id "Ledus.S1G279500.t1"; gene_id "Ledus.S1G279500"
Ledus.S1	AUGUSTUS	CDS	23864075	23864419	0.63	-	0	transcript_id "Ledus.S1G279500.t1"; gene_id "Ledus.S1G279500"
Ledus.S1	AUGUSTUS	exon	23864075	23864419	.	-	.	transcript_id "Ledus.S1G279500.t1"; gene_id "Ledus.S1G279500"
Ledus.S1	AUGUSTUS	start_codon	23864417	23864419	.	-	0	transcript_id "Ledus.S1G279500.t1"; gene_id "Ledus.S1G279500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg358.t1 is derived from g7219.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1928568	1930312	.	-	.	Ledus.S2G024000
Ledus.S2	AUGUSTUS	transcript	1928568	1930312	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	stop_codon	1928565	1928567	.	-	0	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	CDS	1928568	1928581	0.82	-	2	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	exon	1928568	1928581	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	intron	1928582	1928809	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	CDS	1928810	1928891	0.82	-	0	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	exon	1928810	1928891	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	intron	1928892	1929037	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	CDS	1929038	1929172	0.98	-	0	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	exon	1929038	1929172	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	intron	1929173	1929336	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	CDS	1929337	1929377	0.51	-	2	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	exon	1929337	1929377	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	intron	1929378	1929680	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	CDS	1929681	1929736	0.27	-	1	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	exon	1929681	1929736	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	intron	1929737	1929831	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	CDS	1929832	1930016	0.2	-	0	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	exon	1929832	1930016	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	intron	1930017	1930162	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	CDS	1930163	1930312	0.68	-	0	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	exon	1930163	1930312	.	-	.	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
Ledus.S2	AUGUSTUS	start_codon	1930310	1930312	.	-	0	transcript_id "Ledus.S2G024000.t1"; gene_id "Ledus.S2G024000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10832.t1 is derived from g11864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18110017	18110262	.	+	.	Ledus.S3G230900
Ledus.S3	AUGUSTUS	transcript	18110017	18110262	.	+	.	transcript_id "Ledus.S3G230900.t1"; gene_id "Ledus.S3G230900"
Ledus.S3	AUGUSTUS	start_codon	18110017	18110019	.	+	0	transcript_id "Ledus.S3G230900.t1"; gene_id "Ledus.S3G230900"
Ledus.S3	AUGUSTUS	CDS	18110017	18110262	1	+	0	transcript_id "Ledus.S3G230900.t1"; gene_id "Ledus.S3G230900"
Ledus.S3	AUGUSTUS	exon	18110017	18110262	.	+	.	transcript_id "Ledus.S3G230900.t1"; gene_id "Ledus.S3G230900"
Ledus.S3	AUGUSTUS	stop_codon	18110263	18110265	.	+	0	transcript_id "Ledus.S3G230900.t1"; gene_id "Ledus.S3G230900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10945.t1 is derived from g4563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	754161	754923	.	-	.	Ledus.S4G010100
Ledus.S4	AUGUSTUS	transcript	754161	754923	.	-	.	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	stop_codon	754158	754160	.	-	0	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	CDS	754161	754261	1	-	2	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	exon	754161	754261	.	-	.	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	intron	754262	754422	.	-	.	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	CDS	754423	754576	1	-	0	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	exon	754423	754576	.	-	.	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	intron	754577	754669	.	-	.	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	CDS	754670	754820	1	-	1	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	exon	754670	754820	.	-	.	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	intron	754821	754909	.	-	.	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	CDS	754910	754923	0.4	-	0	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	exon	754910	754923	.	-	.	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
Ledus.S4	AUGUSTUS	start_codon	754921	754923	.	-	0	transcript_id "Ledus.S4G010100.t1"; gene_id "Ledus.S4G010100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10179.t1 is derived from g11209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13465464	13468500	.	+	.	Ledus.S3G165600
Ledus.S3	AUGUSTUS	transcript	13465464	13468500	.	+	.	transcript_id "Ledus.S3G165600.t1"; gene_id "Ledus.S3G165600"
Ledus.S3	AUGUSTUS	start_codon	13465464	13465466	.	+	0	transcript_id "Ledus.S3G165600.t1"; gene_id "Ledus.S3G165600"
Ledus.S3	AUGUSTUS	CDS	13465464	13468069	0.84	+	0	transcript_id "Ledus.S3G165600.t1"; gene_id "Ledus.S3G165600"
Ledus.S3	AUGUSTUS	exon	13465464	13468069	.	+	.	transcript_id "Ledus.S3G165600.t1"; gene_id "Ledus.S3G165600"
Ledus.S3	AUGUSTUS	intron	13468070	13468161	.	+	.	transcript_id "Ledus.S3G165600.t1"; gene_id "Ledus.S3G165600"
Ledus.S3	AUGUSTUS	CDS	13468162	13468253	1	+	1	transcript_id "Ledus.S3G165600.t1"; gene_id "Ledus.S3G165600"
Ledus.S3	AUGUSTUS	exon	13468162	13468253	.	+	.	transcript_id "Ledus.S3G165600.t1"; gene_id "Ledus.S3G165600"
Ledus.S3	AUGUSTUS	intron	13468254	13468342	.	+	.	transcript_id "Ledus.S3G165600.t1"; gene_id "Ledus.S3G165600"
Ledus.S3	AUGUSTUS	CDS	13468343	13468500	1	+	2	transcript_id "Ledus.S3G165600.t1"; gene_id "Ledus.S3G165600"
Ledus.S3	AUGUSTUS	exon	13468343	13468500	.	+	.	transcript_id "Ledus.S3G165600.t1"; gene_id "Ledus.S3G165600"
Ledus.S3	AUGUSTUS	stop_codon	13468501	13468503	.	+	0	transcript_id "Ledus.S3G165600.t1"; gene_id "Ledus.S3G165600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg785.t1 is derived from g7646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5079281	5079871	.	+	.	Ledus.S2G066700
Ledus.S2	AUGUSTUS	transcript	5079281	5079871	.	+	.	transcript_id "Ledus.S2G066700.t1"; gene_id "Ledus.S2G066700"
Ledus.S2	AUGUSTUS	start_codon	5079281	5079283	.	+	0	transcript_id "Ledus.S2G066700.t1"; gene_id "Ledus.S2G066700"
Ledus.S2	AUGUSTUS	CDS	5079281	5079871	0.99	+	0	transcript_id "Ledus.S2G066700.t1"; gene_id "Ledus.S2G066700"
Ledus.S2	AUGUSTUS	exon	5079281	5079871	.	+	.	transcript_id "Ledus.S2G066700.t1"; gene_id "Ledus.S2G066700"
Ledus.S2	AUGUSTUS	stop_codon	5079872	5079874	.	+	0	transcript_id "Ledus.S2G066700.t1"; gene_id "Ledus.S2G066700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2443.t1 is derived from g9306.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18124272	18125417	.	-	.	Ledus.S2G232500
Ledus.S2	AUGUSTUS	transcript	18124272	18125417	.	-	.	transcript_id "Ledus.S2G232500.t1"; gene_id "Ledus.S2G232500"
Ledus.S2	AUGUSTUS	stop_codon	18124269	18124271	.	-	0	transcript_id "Ledus.S2G232500.t1"; gene_id "Ledus.S2G232500"
Ledus.S2	AUGUSTUS	CDS	18124272	18125417	0.99	-	0	transcript_id "Ledus.S2G232500.t1"; gene_id "Ledus.S2G232500"
Ledus.S2	AUGUSTUS	exon	18124272	18125417	.	-	.	transcript_id "Ledus.S2G232500.t1"; gene_id "Ledus.S2G232500"
Ledus.S2	AUGUSTUS	start_codon	18125415	18125417	.	-	0	transcript_id "Ledus.S2G232500.t1"; gene_id "Ledus.S2G232500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11048.t1 is derived from g4666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1406368	1414607	.	-	.	Ledus.S4G020400
Ledus.S4	AUGUSTUS	transcript	1406368	1414607	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	stop_codon	1406365	1406367	.	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1406368	1406544	0.98	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1406368	1406544	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1406545	1406641	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1406642	1406680	1	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1406642	1406680	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1406681	1406805	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1406806	1407060	1	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1406806	1407060	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1407061	1407215	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1407216	1407335	1	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1407216	1407335	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1407336	1407450	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1407451	1407533	1	-	2	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1407451	1407533	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1407534	1407672	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1407673	1408489	0.96	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1407673	1408489	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1408490	1408615	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1408616	1409552	0.98	-	1	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1408616	1409552	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1409553	1409644	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1409645	1410057	0.96	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1409645	1410057	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1410058	1410305	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1410306	1410461	1	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1410306	1410461	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1410462	1410622	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1410623	1410925	1	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1410623	1410925	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1410926	1411125	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1411126	1411415	0.67	-	2	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1411126	1411415	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1411416	1411497	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1411498	1411539	0.67	-	2	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1411498	1411539	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1411540	1411736	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1411737	1411890	0.63	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1411737	1411890	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1411891	1412068	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1412069	1412626	1	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1412069	1412626	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1412627	1412746	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1412747	1412944	1	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1412747	1412944	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1412945	1413235	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1413236	1413298	1	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1413236	1413298	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1413299	1413458	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1413459	1413530	1	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1413459	1413530	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1413531	1413650	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1413651	1414047	0.87	-	1	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1413651	1414047	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1414048	1414125	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1414126	1414462	1	-	2	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1414126	1414462	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	intron	1414463	1414552	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	CDS	1414553	1414607	1	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	exon	1414553	1414607	.	-	.	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
Ledus.S4	AUGUSTUS	start_codon	1414605	1414607	.	-	0	transcript_id "Ledus.S4G020400.t1"; gene_id "Ledus.S4G020400"
# This transcript jg9676.t2 is derived from g10706.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9677.t1 is derived from g10707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8983165	8984433	.	+	.	Ledus.S3G115400
Ledus.S3	AUGUSTUS	transcript	8983165	8984433	.	+	.	transcript_id "Ledus.S3G115400.t1"; gene_id "Ledus.S3G115400"
Ledus.S3	AUGUSTUS	start_codon	8983165	8983167	.	+	0	transcript_id "Ledus.S3G115400.t1"; gene_id "Ledus.S3G115400"
Ledus.S3	AUGUSTUS	CDS	8983165	8984433	0.74	+	0	transcript_id "Ledus.S3G115400.t1"; gene_id "Ledus.S3G115400"
Ledus.S3	AUGUSTUS	exon	8983165	8984433	.	+	.	transcript_id "Ledus.S3G115400.t1"; gene_id "Ledus.S3G115400"
Ledus.S3	AUGUSTUS	stop_codon	8984434	8984436	.	+	0	transcript_id "Ledus.S3G115400.t1"; gene_id "Ledus.S3G115400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6277.t1 is derived from g3720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30096330	30097135	.	-	.	Ledus.S1G369800
Ledus.S1	AUGUSTUS	transcript	30096330	30097135	.	-	.	transcript_id "Ledus.S1G369800.t1"; gene_id "Ledus.S1G369800"
Ledus.S1	AUGUSTUS	stop_codon	30096327	30096329	.	-	0	transcript_id "Ledus.S1G369800.t1"; gene_id "Ledus.S1G369800"
Ledus.S1	AUGUSTUS	CDS	30096330	30096509	1	-	0	transcript_id "Ledus.S1G369800.t1"; gene_id "Ledus.S1G369800"
Ledus.S1	AUGUSTUS	exon	30096330	30096509	.	-	.	transcript_id "Ledus.S1G369800.t1"; gene_id "Ledus.S1G369800"
Ledus.S1	AUGUSTUS	intron	30096510	30096618	.	-	.	transcript_id "Ledus.S1G369800.t1"; gene_id "Ledus.S1G369800"
Ledus.S1	AUGUSTUS	CDS	30096619	30096723	1	-	0	transcript_id "Ledus.S1G369800.t1"; gene_id "Ledus.S1G369800"
Ledus.S1	AUGUSTUS	exon	30096619	30096723	.	-	.	transcript_id "Ledus.S1G369800.t1"; gene_id "Ledus.S1G369800"
Ledus.S1	AUGUSTUS	intron	30096724	30096850	.	-	.	transcript_id "Ledus.S1G369800.t1"; gene_id "Ledus.S1G369800"
Ledus.S1	AUGUSTUS	CDS	30096851	30097135	0.96	-	0	transcript_id "Ledus.S1G369800.t1"; gene_id "Ledus.S1G369800"
Ledus.S1	AUGUSTUS	exon	30096851	30097135	.	-	.	transcript_id "Ledus.S1G369800.t1"; gene_id "Ledus.S1G369800"
Ledus.S1	AUGUSTUS	start_codon	30097133	30097135	.	-	0	transcript_id "Ledus.S1G369800.t1"; gene_id "Ledus.S1G369800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg13063.t1 is derived from g6873.t6 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4740154	4745888	.	+	.	Ledus.S6G012500
Ledus.S6	AUGUSTUS	transcript	4740154	4745888	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	start_codon	4740154	4740156	.	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740154	4740236	0.67	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740154	4740236	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740237	4740415	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740416	4740428	0.84	+	1	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740416	4740428	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740429	4740625	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740626	4740677	1	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740626	4740677	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740678	4740780	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740781	4740864	0.99	+	2	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740781	4740864	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740865	4740970	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740971	4741068	1	+	2	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740971	4741068	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741069	4741242	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741243	4741314	1	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741243	4741314	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741315	4741395	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741396	4741445	0.73	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741396	4741445	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741446	4741527	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741528	4741651	0.85	+	1	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741528	4741651	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741652	4741756	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741757	4741885	0.88	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741757	4741885	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741886	4742070	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742071	4742160	1	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742071	4742160	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742161	4742292	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742293	4742355	0.98	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742293	4742355	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742356	4742450	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742451	4742576	0.94	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742451	4742576	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742577	4742743	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742744	4742947	0.6	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742744	4742947	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742948	4743266	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4743267	4743302	0.89	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4743267	4743302	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4743303	4743622	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4743623	4743823	0.83	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4743623	4743823	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4743824	4743928	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4743929	4744198	0.68	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4743929	4744198	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4744199	4744274	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4744275	4744571	0.98	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4744275	4744571	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4744572	4744673	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4744674	4744792	0.86	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4744674	4744792	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4744793	4744896	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4744897	4745107	0.87	+	1	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4744897	4745107	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4745108	4745202	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4745203	4745515	0.93	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4745203	4745515	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4745516	4745604	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4745605	4745888	0.37	+	2	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4745605	4745888	.	+	.	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	stop_codon	4745889	4745891	.	+	0	transcript_id "Ledus.S6G012500.t1"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	transcript	4740154	4745888	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	start_codon	4740154	4740156	.	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740154	4740236	0.59	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740154	4740236	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740237	4740415	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740416	4740428	0.88	+	1	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740416	4740428	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740429	4740625	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740626	4740677	0.99	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740626	4740677	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740678	4740780	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740781	4740864	1	+	2	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740781	4740864	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740865	4740970	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740971	4741068	1	+	2	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740971	4741068	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741069	4741242	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741243	4741314	1	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741243	4741314	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741315	4741395	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741396	4741445	0.77	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741396	4741445	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741446	4741527	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741528	4741651	0.84	+	1	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741528	4741651	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741652	4741756	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741757	4741885	0.81	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741757	4741885	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741886	4742070	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742071	4742160	1	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742071	4742160	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742161	4742237	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742238	4742297	0.43	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742238	4742297	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742298	4742450	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742451	4742576	0.67	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742451	4742576	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742577	4742980	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742981	4742992	0.91	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742981	4742992	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742993	4743266	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4743267	4743302	0.94	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4743267	4743302	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4743303	4743622	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4743623	4743823	0.9	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4743623	4743823	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4743824	4743928	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4743929	4744198	0.58	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4743929	4744198	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4744199	4744274	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4744275	4744571	0.99	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4744275	4744571	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4744572	4744673	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4744674	4744792	0.82	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4744674	4744792	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4744793	4744896	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4744897	4745107	0.83	+	1	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4744897	4745107	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4745108	4745202	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4745203	4745515	0.92	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4745203	4745515	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4745516	4745604	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4745605	4745888	0.38	+	2	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4745605	4745888	.	+	.	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	stop_codon	4745889	4745891	.	+	0	transcript_id "Ledus.S6G012500.t2"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	transcript	4740154	4745888	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	start_codon	4740154	4740156	.	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740154	4740236	0.65	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740154	4740236	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740237	4740415	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740416	4740428	0.79	+	1	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740416	4740428	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740429	4740625	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740626	4740677	1	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740626	4740677	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740678	4740780	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740781	4740864	1	+	2	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740781	4740864	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740865	4740970	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740971	4741068	1	+	2	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740971	4741068	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741069	4741242	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741243	4741314	1	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741243	4741314	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741315	4741395	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741396	4741445	0.81	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741396	4741445	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741446	4741527	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741528	4741651	0.84	+	1	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741528	4741651	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741652	4741756	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741757	4741885	0.85	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741757	4741885	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741886	4742070	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742071	4742160	0.99	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742071	4742160	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742161	4742237	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742238	4742297	0.39	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742238	4742297	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742298	4742450	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742451	4742576	0.72	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742451	4742576	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742577	4742743	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742744	4742947	0.62	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742744	4742947	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742948	4743266	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4743267	4743302	0.88	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4743267	4743302	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4743303	4743622	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4743623	4743823	0.8	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4743623	4743823	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4743824	4743928	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4743929	4744198	0.63	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4743929	4744198	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4744199	4744274	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4744275	4744571	0.99	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4744275	4744571	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4744572	4744673	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4744674	4744792	0.87	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4744674	4744792	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4744793	4744896	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4744897	4745107	0.88	+	1	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4744897	4745107	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4745108	4745202	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4745203	4745515	0.94	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4745203	4745515	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4745516	4745604	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4745605	4745888	0.44	+	2	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4745605	4745888	.	+	.	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	stop_codon	4745889	4745891	.	+	0	transcript_id "Ledus.S6G012500.t3"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	transcript	4740154	4745888	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	start_codon	4740154	4740156	.	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740154	4740236	0.66	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740154	4740236	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740237	4740415	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740416	4740428	0.78	+	1	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740416	4740428	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740429	4740625	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740626	4740677	1	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740626	4740677	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740678	4740780	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740781	4740864	1	+	2	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740781	4740864	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4740865	4740970	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4740971	4741068	1	+	2	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4740971	4741068	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741069	4741242	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741243	4741314	1	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741243	4741314	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741315	4741395	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741396	4741445	0.71	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741396	4741445	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741446	4741527	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741528	4741651	0.82	+	1	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741528	4741651	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741652	4741756	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4741757	4741885	0.84	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4741757	4741885	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4741886	4742070	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742071	4742160	1	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742071	4742160	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742161	4742237	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742238	4742297	0.4	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742238	4742297	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742298	4742450	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742451	4742576	0.7	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742451	4742576	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742577	4742743	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4742744	4742947	0.63	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4742744	4742947	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4742948	4743266	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4743267	4743467	0.58	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4743267	4743467	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4743468	4743622	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4743623	4743823	0.89	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4743623	4743823	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4743824	4743928	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4743929	4744198	0.68	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4743929	4744198	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4744199	4744274	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4744275	4744571	0.99	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4744275	4744571	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4744572	4744673	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4744674	4744792	0.83	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4744674	4744792	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4744793	4744896	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4744897	4745107	0.88	+	1	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4744897	4745107	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4745108	4745202	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4745203	4745515	0.94	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4745203	4745515	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	intron	4745516	4745604	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	CDS	4745605	4745888	0.31	+	2	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	exon	4745605	4745888	.	+	.	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
Ledus.S6	AUGUSTUS	stop_codon	4745889	4745891	.	+	0	transcript_id "Ledus.S6G012500.t4"; gene_id "Ledus.S6G012500"
# This transcript jg11991.t2 is derived from g5610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11992.t1 is derived from g5611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8363541	8365336	.	+	.	Ledus.S4G114800
Ledus.S4	AUGUSTUS	transcript	8363541	8365336	.	+	.	transcript_id "Ledus.S4G114800.t1"; gene_id "Ledus.S4G114800"
Ledus.S4	AUGUSTUS	start_codon	8363541	8363543	.	+	0	transcript_id "Ledus.S4G114800.t1"; gene_id "Ledus.S4G114800"
Ledus.S4	AUGUSTUS	CDS	8363541	8364089	1	+	0	transcript_id "Ledus.S4G114800.t1"; gene_id "Ledus.S4G114800"
Ledus.S4	AUGUSTUS	exon	8363541	8364089	.	+	.	transcript_id "Ledus.S4G114800.t1"; gene_id "Ledus.S4G114800"
Ledus.S4	AUGUSTUS	intron	8364090	8364189	.	+	.	transcript_id "Ledus.S4G114800.t1"; gene_id "Ledus.S4G114800"
Ledus.S4	AUGUSTUS	CDS	8364190	8364409	1	+	0	transcript_id "Ledus.S4G114800.t1"; gene_id "Ledus.S4G114800"
Ledus.S4	AUGUSTUS	exon	8364190	8364409	.	+	.	transcript_id "Ledus.S4G114800.t1"; gene_id "Ledus.S4G114800"
Ledus.S4	AUGUSTUS	intron	8364410	8364527	.	+	.	transcript_id "Ledus.S4G114800.t1"; gene_id "Ledus.S4G114800"
Ledus.S4	AUGUSTUS	CDS	8364528	8365336	1	+	2	transcript_id "Ledus.S4G114800.t1"; gene_id "Ledus.S4G114800"
Ledus.S4	AUGUSTUS	exon	8364528	8365336	.	+	.	transcript_id "Ledus.S4G114800.t1"; gene_id "Ledus.S4G114800"
Ledus.S4	AUGUSTUS	stop_codon	8365337	8365339	.	+	0	transcript_id "Ledus.S4G114800.t1"; gene_id "Ledus.S4G114800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3953.t1 is derived from g1389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13706583	13707314	.	-	.	Ledus.S1G137400
Ledus.S1	AUGUSTUS	transcript	13706583	13707314	.	-	.	transcript_id "Ledus.S1G137400.t1"; gene_id "Ledus.S1G137400"
Ledus.S1	AUGUSTUS	stop_codon	13706580	13706582	.	-	0	transcript_id "Ledus.S1G137400.t1"; gene_id "Ledus.S1G137400"
Ledus.S1	AUGUSTUS	CDS	13706583	13707034	0.95	-	2	transcript_id "Ledus.S1G137400.t1"; gene_id "Ledus.S1G137400"
Ledus.S1	AUGUSTUS	exon	13706583	13707034	.	-	.	transcript_id "Ledus.S1G137400.t1"; gene_id "Ledus.S1G137400"
Ledus.S1	AUGUSTUS	intron	13707035	13707112	.	-	.	transcript_id "Ledus.S1G137400.t1"; gene_id "Ledus.S1G137400"
Ledus.S1	AUGUSTUS	CDS	13707113	13707314	0.82	-	0	transcript_id "Ledus.S1G137400.t1"; gene_id "Ledus.S1G137400"
Ledus.S1	AUGUSTUS	exon	13707113	13707314	.	-	.	transcript_id "Ledus.S1G137400.t1"; gene_id "Ledus.S1G137400"
Ledus.S1	AUGUSTUS	start_codon	13707312	13707314	.	-	0	transcript_id "Ledus.S1G137400.t1"; gene_id "Ledus.S1G137400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1597.t1 is derived from g8458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11222815	11223450	.	-	.	Ledus.S2G147900
Ledus.S2	AUGUSTUS	transcript	11222815	11223450	.	-	.	transcript_id "Ledus.S2G147900.t1"; gene_id "Ledus.S2G147900"
Ledus.S2	AUGUSTUS	stop_codon	11222812	11222814	.	-	0	transcript_id "Ledus.S2G147900.t1"; gene_id "Ledus.S2G147900"
Ledus.S2	AUGUSTUS	CDS	11222815	11223450	0.99	-	0	transcript_id "Ledus.S2G147900.t1"; gene_id "Ledus.S2G147900"
Ledus.S2	AUGUSTUS	exon	11222815	11223450	.	-	.	transcript_id "Ledus.S2G147900.t1"; gene_id "Ledus.S2G147900"
Ledus.S2	AUGUSTUS	start_codon	11223448	11223450	.	-	0	transcript_id "Ledus.S2G147900.t1"; gene_id "Ledus.S2G147900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2977.t1 is derived from g412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5052390	5053223	.	-	.	Ledus.S1G039800
Ledus.S1	AUGUSTUS	transcript	5052390	5053223	.	-	.	transcript_id "Ledus.S1G039800.t1"; gene_id "Ledus.S1G039800"
Ledus.S1	AUGUSTUS	stop_codon	5052387	5052389	.	-	0	transcript_id "Ledus.S1G039800.t1"; gene_id "Ledus.S1G039800"
Ledus.S1	AUGUSTUS	CDS	5052390	5052713	0.47	-	0	transcript_id "Ledus.S1G039800.t1"; gene_id "Ledus.S1G039800"
Ledus.S1	AUGUSTUS	exon	5052390	5052713	.	-	.	transcript_id "Ledus.S1G039800.t1"; gene_id "Ledus.S1G039800"
Ledus.S1	AUGUSTUS	intron	5052714	5052830	.	-	.	transcript_id "Ledus.S1G039800.t1"; gene_id "Ledus.S1G039800"
Ledus.S1	AUGUSTUS	CDS	5052831	5053223	0.47	-	0	transcript_id "Ledus.S1G039800.t1"; gene_id "Ledus.S1G039800"
Ledus.S1	AUGUSTUS	exon	5052831	5053223	.	-	.	transcript_id "Ledus.S1G039800.t1"; gene_id "Ledus.S1G039800"
Ledus.S1	AUGUSTUS	start_codon	5053221	5053223	.	-	0	transcript_id "Ledus.S1G039800.t1"; gene_id "Ledus.S1G039800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12244.t1 is derived from g5864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10620909	10623273	.	+	.	Ledus.S4G140000
Ledus.S4	AUGUSTUS	transcript	10620909	10623273	.	+	.	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	start_codon	10620909	10620911	.	+	0	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	CDS	10620909	10621056	0.71	+	0	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	exon	10620909	10621056	.	+	.	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	intron	10621057	10621244	.	+	.	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	CDS	10621245	10621577	1	+	2	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	exon	10621245	10621577	.	+	.	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	intron	10621578	10621844	.	+	.	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	CDS	10621845	10622032	1	+	2	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	exon	10621845	10622032	.	+	.	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	intron	10622033	10622181	.	+	.	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	CDS	10622182	10622443	0.32	+	0	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	exon	10622182	10622443	.	+	.	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	intron	10622444	10622710	.	+	.	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	CDS	10622711	10622962	0.21	+	2	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	exon	10622711	10622962	.	+	.	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	intron	10622963	10623091	.	+	.	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	CDS	10623092	10623273	0.31	+	2	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	exon	10623092	10623273	.	+	.	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
Ledus.S4	AUGUSTUS	stop_codon	10623274	10623276	.	+	0	transcript_id "Ledus.S4G140000.t1"; gene_id "Ledus.S4G140000"
# This transcript jg6737.t2 is derived from g4180.t6 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 2 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6737.t3 is derived from g4180.t5 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 2 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6737.t4 is derived from g4180.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6737.t5 is derived from g4180.t7 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6738.t1 is derived from g4181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33643138	33644936	.	+	.	Ledus.S1G415900
Ledus.S1	AUGUSTUS	transcript	33643138	33644936	.	+	.	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	start_codon	33643138	33643140	.	+	0	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	CDS	33643138	33643379	0.45	+	0	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	exon	33643138	33643379	.	+	.	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	intron	33643380	33643554	.	+	.	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	CDS	33643555	33643870	1	+	1	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	exon	33643555	33643870	.	+	.	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	intron	33643871	33643994	.	+	.	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	CDS	33643995	33644079	1	+	0	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	exon	33643995	33644079	.	+	.	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	intron	33644080	33644202	.	+	.	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	CDS	33644203	33644289	1	+	2	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	exon	33644203	33644289	.	+	.	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	intron	33644290	33644424	.	+	.	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	CDS	33644425	33644673	0.8	+	2	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	exon	33644425	33644673	.	+	.	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	intron	33644674	33644811	.	+	.	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	CDS	33644812	33644936	0.62	+	2	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	exon	33644812	33644936	.	+	.	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
Ledus.S1	AUGUSTUS	stop_codon	33644937	33644939	.	+	0	transcript_id "Ledus.S1G415900.t1"; gene_id "Ledus.S1G415900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5191.t1 is derived from g2630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22345353	22346385	.	+	.	Ledus.S1G261200
Ledus.S1	AUGUSTUS	transcript	22345353	22346385	.	+	.	transcript_id "Ledus.S1G261200.t1"; gene_id "Ledus.S1G261200"
Ledus.S1	AUGUSTUS	start_codon	22345353	22345355	.	+	0	transcript_id "Ledus.S1G261200.t1"; gene_id "Ledus.S1G261200"
Ledus.S1	AUGUSTUS	CDS	22345353	22345628	0.5	+	0	transcript_id "Ledus.S1G261200.t1"; gene_id "Ledus.S1G261200"
Ledus.S1	AUGUSTUS	exon	22345353	22345628	.	+	.	transcript_id "Ledus.S1G261200.t1"; gene_id "Ledus.S1G261200"
Ledus.S1	AUGUSTUS	intron	22345629	22345712	.	+	.	transcript_id "Ledus.S1G261200.t1"; gene_id "Ledus.S1G261200"
Ledus.S1	AUGUSTUS	CDS	22345713	22345912	0.99	+	0	transcript_id "Ledus.S1G261200.t1"; gene_id "Ledus.S1G261200"
Ledus.S1	AUGUSTUS	exon	22345713	22345912	.	+	.	transcript_id "Ledus.S1G261200.t1"; gene_id "Ledus.S1G261200"
Ledus.S1	AUGUSTUS	intron	22345913	22345988	.	+	.	transcript_id "Ledus.S1G261200.t1"; gene_id "Ledus.S1G261200"
Ledus.S1	AUGUSTUS	CDS	22345989	22346385	0.99	+	1	transcript_id "Ledus.S1G261200.t1"; gene_id "Ledus.S1G261200"
Ledus.S1	AUGUSTUS	exon	22345989	22346385	.	+	.	transcript_id "Ledus.S1G261200.t1"; gene_id "Ledus.S1G261200"
Ledus.S1	AUGUSTUS	stop_codon	22346386	22346388	.	+	0	transcript_id "Ledus.S1G261200.t1"; gene_id "Ledus.S1G261200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6851.t1 is derived from g4295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34641395	34643297	.	-	.	Ledus.S1G427200
Ledus.S1	AUGUSTUS	transcript	34641395	34643297	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	stop_codon	34641392	34641394	.	-	0	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	CDS	34641395	34641452	0.88	-	1	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	exon	34641395	34641452	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	intron	34641453	34641544	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	CDS	34641545	34641619	0.82	-	1	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	exon	34641545	34641619	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	intron	34641620	34641735	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	CDS	34641736	34641895	0.96	-	2	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	exon	34641736	34641895	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	intron	34641896	34642073	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	CDS	34642074	34642216	0.57	-	1	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	exon	34642074	34642216	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	intron	34642217	34642298	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	CDS	34642299	34642420	1	-	0	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	exon	34642299	34642420	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	intron	34642421	34642629	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	CDS	34642630	34642750	1	-	1	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	exon	34642630	34642750	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	intron	34642751	34642889	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	CDS	34642890	34642986	1	-	2	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	exon	34642890	34642986	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	intron	34642987	34643164	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	CDS	34643165	34643297	0.85	-	0	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	exon	34643165	34643297	.	-	.	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
Ledus.S1	AUGUSTUS	start_codon	34643295	34643297	.	-	0	transcript_id "Ledus.S1G427200.t1"; gene_id "Ledus.S1G427200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10254.t1 is derived from g11284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13832776	13839005	.	-	.	Ledus.S3G173100
Ledus.S3	AUGUSTUS	transcript	13832776	13839005	.	-	.	transcript_id "Ledus.S3G173100.t1"; gene_id "Ledus.S3G173100"
Ledus.S3	AUGUSTUS	stop_codon	13832773	13832775	.	-	0	transcript_id "Ledus.S3G173100.t1"; gene_id "Ledus.S3G173100"
Ledus.S3	AUGUSTUS	CDS	13832776	13833043	1	-	1	transcript_id "Ledus.S3G173100.t1"; gene_id "Ledus.S3G173100"
Ledus.S3	AUGUSTUS	exon	13832776	13833043	.	-	.	transcript_id "Ledus.S3G173100.t1"; gene_id "Ledus.S3G173100"
Ledus.S3	AUGUSTUS	intron	13833044	13833844	.	-	.	transcript_id "Ledus.S3G173100.t1"; gene_id "Ledus.S3G173100"
Ledus.S3	AUGUSTUS	CDS	13833845	13834006	0.01	-	1	transcript_id "Ledus.S3G173100.t1"; gene_id "Ledus.S3G173100"
Ledus.S3	AUGUSTUS	exon	13833845	13834006	.	-	.	transcript_id "Ledus.S3G173100.t1"; gene_id "Ledus.S3G173100"
Ledus.S3	AUGUSTUS	intron	13834007	13838928	.	-	.	transcript_id "Ledus.S3G173100.t1"; gene_id "Ledus.S3G173100"
Ledus.S3	AUGUSTUS	CDS	13838929	13839005	0.02	-	0	transcript_id "Ledus.S3G173100.t1"; gene_id "Ledus.S3G173100"
Ledus.S3	AUGUSTUS	exon	13838929	13839005	.	-	.	transcript_id "Ledus.S3G173100.t1"; gene_id "Ledus.S3G173100"
Ledus.S3	AUGUSTUS	start_codon	13839003	13839005	.	-	0	transcript_id "Ledus.S3G173100.t1"; gene_id "Ledus.S3G173100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2720.t1 is derived from g153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2520019	2521487	.	+	.	Ledus.S1G014100
Ledus.S1	AUGUSTUS	transcript	2520019	2521487	.	+	.	transcript_id "Ledus.S1G014100.t1"; gene_id "Ledus.S1G014100"
Ledus.S1	AUGUSTUS	start_codon	2520019	2520021	.	+	0	transcript_id "Ledus.S1G014100.t1"; gene_id "Ledus.S1G014100"
Ledus.S1	AUGUSTUS	CDS	2520019	2520066	0.91	+	0	transcript_id "Ledus.S1G014100.t1"; gene_id "Ledus.S1G014100"
Ledus.S1	AUGUSTUS	exon	2520019	2520066	.	+	.	transcript_id "Ledus.S1G014100.t1"; gene_id "Ledus.S1G014100"
Ledus.S1	AUGUSTUS	intron	2520067	2520164	.	+	.	transcript_id "Ledus.S1G014100.t1"; gene_id "Ledus.S1G014100"
Ledus.S1	AUGUSTUS	CDS	2520165	2521487	0.89	+	0	transcript_id "Ledus.S1G014100.t1"; gene_id "Ledus.S1G014100"
Ledus.S1	AUGUSTUS	exon	2520165	2521487	.	+	.	transcript_id "Ledus.S1G014100.t1"; gene_id "Ledus.S1G014100"
Ledus.S1	AUGUSTUS	stop_codon	2521488	2521490	.	+	0	transcript_id "Ledus.S1G014100.t1"; gene_id "Ledus.S1G014100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9592.t1 is derived from g10622.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8161403	8162933	.	+	.	Ledus.S3G106900
Ledus.S3	AUGUSTUS	transcript	8161403	8162933	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	start_codon	8161403	8161405	.	+	0	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8161403	8161607	0.37	+	0	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8161403	8161607	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	intron	8161608	8161710	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8161711	8161832	1	+	2	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8161711	8161832	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	intron	8161833	8161921	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8161922	8162004	1	+	0	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8161922	8162004	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	intron	8162005	8162090	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8162091	8162212	0.98	+	1	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8162091	8162212	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	intron	8162213	8162314	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8162315	8162482	0.93	+	2	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8162315	8162482	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	intron	8162483	8162583	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8162584	8162668	0.98	+	2	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8162584	8162668	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	intron	8162669	8162761	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8162762	8162933	0.98	+	1	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8162762	8162933	.	+	.	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	stop_codon	8162934	8162936	.	+	0	transcript_id "Ledus.S3G106900.t1"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	transcript	8161403	8162933	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	start_codon	8161403	8161405	.	+	0	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8161403	8161607	0.41	+	0	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8161403	8161607	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	intron	8161608	8161710	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8161711	8161832	1	+	2	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8161711	8161832	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	intron	8161833	8161921	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8161922	8162004	1	+	0	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8161922	8162004	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	intron	8162005	8162096	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8162097	8162212	0.75	+	1	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8162097	8162212	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	intron	8162213	8162314	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8162315	8162482	0.83	+	2	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8162315	8162482	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	intron	8162483	8162583	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8162584	8162668	0.98	+	2	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8162584	8162668	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	intron	8162669	8162761	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	CDS	8162762	8162933	0.96	+	1	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	exon	8162762	8162933	.	+	.	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
Ledus.S3	AUGUSTUS	stop_codon	8162934	8162936	.	+	0	transcript_id "Ledus.S3G106900.t2"; gene_id "Ledus.S3G106900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6656.t1 is derived from g4099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32933456	32936200	.	-	.	Ledus.S1G407700
Ledus.S1	AUGUSTUS	transcript	32933456	32936200	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	stop_codon	32933453	32933455	.	-	0	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	CDS	32933456	32933456	1	-	1	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	exon	32933456	32933456	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	intron	32933457	32933756	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	CDS	32933757	32933830	1	-	0	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	exon	32933757	32933830	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	intron	32933831	32933978	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	CDS	32933979	32934102	1	-	1	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	exon	32933979	32934102	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	intron	32934103	32934254	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	CDS	32934255	32934485	1	-	1	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	exon	32934255	32934485	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	intron	32934486	32934624	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	CDS	32934625	32934865	1	-	2	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	exon	32934625	32934865	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	intron	32934866	32934961	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	CDS	32934962	32935784	1	-	0	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	exon	32934962	32935784	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	intron	32935785	32935857	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	CDS	32935858	32936053	1	-	1	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	exon	32935858	32936053	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	intron	32936054	32936135	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	CDS	32936136	32936200	1	-	0	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	exon	32936136	32936200	.	-	.	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
Ledus.S1	AUGUSTUS	start_codon	32936198	32936200	.	-	0	transcript_id "Ledus.S1G407700.t1"; gene_id "Ledus.S1G407700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12891.t1 is derived from g11893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C29	AUGUSTUS	gene	1	1090	.	+	.	Ledus.C29G000100
Ledus.C29	AUGUSTUS	transcript	1	1090	.	+	.	transcript_id "Ledus.C29G000100.t1"; gene_id "Ledus.C29G000100"
Ledus.C29	AUGUSTUS	CDS	1	412	0.82	+	1	transcript_id "Ledus.C29G000100.t1"; gene_id "Ledus.C29G000100"
Ledus.C29	AUGUSTUS	exon	1	412	.	+	.	transcript_id "Ledus.C29G000100.t1"; gene_id "Ledus.C29G000100"
Ledus.C29	AUGUSTUS	intron	413	499	.	+	.	transcript_id "Ledus.C29G000100.t1"; gene_id "Ledus.C29G000100"
Ledus.C29	AUGUSTUS	CDS	500	857	1	+	0	transcript_id "Ledus.C29G000100.t1"; gene_id "Ledus.C29G000100"
Ledus.C29	AUGUSTUS	exon	500	857	.	+	.	transcript_id "Ledus.C29G000100.t1"; gene_id "Ledus.C29G000100"
Ledus.C29	AUGUSTUS	intron	858	962	.	+	.	transcript_id "Ledus.C29G000100.t1"; gene_id "Ledus.C29G000100"
Ledus.C29	AUGUSTUS	CDS	963	1090	0.93	+	2	transcript_id "Ledus.C29G000100.t1"; gene_id "Ledus.C29G000100"
Ledus.C29	AUGUSTUS	exon	963	1090	.	+	.	transcript_id "Ledus.C29G000100.t1"; gene_id "Ledus.C29G000100"
Ledus.C29	AUGUSTUS	stop_codon	1091	1093	.	+	0	transcript_id "Ledus.C29G000100.t1"; gene_id "Ledus.C29G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3205.t1 is derived from g640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6823690	6825975	.	+	.	Ledus.S1G062600
Ledus.S1	AUGUSTUS	transcript	6823690	6825975	.	+	.	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	start_codon	6823690	6823692	.	+	0	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	CDS	6823690	6824253	0.75	+	0	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	exon	6823690	6824253	.	+	.	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	intron	6824254	6824388	.	+	.	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	CDS	6824389	6824638	0.89	+	0	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	exon	6824389	6824638	.	+	.	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	intron	6824639	6824718	.	+	.	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	CDS	6824719	6824864	0.45	+	2	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	exon	6824719	6824864	.	+	.	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	intron	6824865	6825078	.	+	.	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	CDS	6825079	6825267	0.49	+	0	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	exon	6825079	6825267	.	+	.	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	intron	6825268	6825385	.	+	.	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	CDS	6825386	6825607	0.53	+	0	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	exon	6825386	6825607	.	+	.	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	intron	6825608	6825678	.	+	.	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	CDS	6825679	6825975	0.97	+	0	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	exon	6825679	6825975	.	+	.	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
Ledus.S1	AUGUSTUS	stop_codon	6825976	6825978	.	+	0	transcript_id "Ledus.S1G062600.t1"; gene_id "Ledus.S1G062600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9021.t1 is derived from g10051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3893732	3896568	.	-	.	Ledus.S3G049800
Ledus.S3	AUGUSTUS	transcript	3893732	3896568	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	stop_codon	3893729	3893731	.	-	0	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	CDS	3893732	3893919	0.96	-	2	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	exon	3893732	3893919	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	intron	3893920	3894024	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	CDS	3894025	3894154	0.96	-	0	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	exon	3894025	3894154	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	intron	3894155	3894253	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	CDS	3894254	3894403	1	-	0	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	exon	3894254	3894403	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	intron	3894404	3894534	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	CDS	3894535	3894774	0.96	-	0	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	exon	3894535	3894774	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	intron	3894775	3895042	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	CDS	3895043	3895208	0.96	-	1	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	exon	3895043	3895208	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	intron	3895209	3895322	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	CDS	3895323	3895544	0.8	-	1	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	exon	3895323	3895544	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	intron	3895545	3895666	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	CDS	3895667	3895833	0.79	-	0	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	exon	3895667	3895833	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	intron	3895834	3895918	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	CDS	3895919	3896083	1	-	0	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	exon	3895919	3896083	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	intron	3896084	3896156	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	CDS	3896157	3896272	1	-	2	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	exon	3896157	3896272	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	intron	3896273	3896357	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	CDS	3896358	3896568	0.81	-	0	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	exon	3896358	3896568	.	-	.	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
Ledus.S3	AUGUSTUS	start_codon	3896566	3896568	.	-	0	transcript_id "Ledus.S3G049800.t1"; gene_id "Ledus.S3G049800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg492.t1 is derived from g7353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2862851	2863947	.	-	.	Ledus.S2G037400
Ledus.S2	AUGUSTUS	transcript	2862851	2863947	.	-	.	transcript_id "Ledus.S2G037400.t1"; gene_id "Ledus.S2G037400"
Ledus.S2	AUGUSTUS	stop_codon	2862848	2862850	.	-	0	transcript_id "Ledus.S2G037400.t1"; gene_id "Ledus.S2G037400"
Ledus.S2	AUGUSTUS	CDS	2862851	2863080	0.37	-	2	transcript_id "Ledus.S2G037400.t1"; gene_id "Ledus.S2G037400"
Ledus.S2	AUGUSTUS	exon	2862851	2863080	.	-	.	transcript_id "Ledus.S2G037400.t1"; gene_id "Ledus.S2G037400"
Ledus.S2	AUGUSTUS	intron	2863081	2863409	.	-	.	transcript_id "Ledus.S2G037400.t1"; gene_id "Ledus.S2G037400"
Ledus.S2	AUGUSTUS	CDS	2863410	2863514	0.33	-	2	transcript_id "Ledus.S2G037400.t1"; gene_id "Ledus.S2G037400"
Ledus.S2	AUGUSTUS	exon	2863410	2863514	.	-	.	transcript_id "Ledus.S2G037400.t1"; gene_id "Ledus.S2G037400"
Ledus.S2	AUGUSTUS	intron	2863515	2863760	.	-	.	transcript_id "Ledus.S2G037400.t1"; gene_id "Ledus.S2G037400"
Ledus.S2	AUGUSTUS	CDS	2863761	2863947	0.63	-	0	transcript_id "Ledus.S2G037400.t1"; gene_id "Ledus.S2G037400"
Ledus.S2	AUGUSTUS	exon	2863761	2863947	.	-	.	transcript_id "Ledus.S2G037400.t1"; gene_id "Ledus.S2G037400"
Ledus.S2	AUGUSTUS	start_codon	2863945	2863947	.	-	0	transcript_id "Ledus.S2G037400.t1"; gene_id "Ledus.S2G037400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg771.t1 is derived from g7632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4900188	4901015	.	+	.	Ledus.S2G065300
Ledus.S2	AUGUSTUS	transcript	4900188	4901015	.	+	.	transcript_id "Ledus.S2G065300.t1"; gene_id "Ledus.S2G065300"
Ledus.S2	AUGUSTUS	start_codon	4900188	4900190	.	+	0	transcript_id "Ledus.S2G065300.t1"; gene_id "Ledus.S2G065300"
Ledus.S2	AUGUSTUS	CDS	4900188	4901015	0.83	+	0	transcript_id "Ledus.S2G065300.t1"; gene_id "Ledus.S2G065300"
Ledus.S2	AUGUSTUS	exon	4900188	4901015	.	+	.	transcript_id "Ledus.S2G065300.t1"; gene_id "Ledus.S2G065300"
Ledus.S2	AUGUSTUS	stop_codon	4901016	4901018	.	+	0	transcript_id "Ledus.S2G065300.t1"; gene_id "Ledus.S2G065300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1859.t1 is derived from g8722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12971461	12971730	.	+	.	Ledus.S2G174100
Ledus.S2	AUGUSTUS	transcript	12971461	12971730	.	+	.	transcript_id "Ledus.S2G174100.t1"; gene_id "Ledus.S2G174100"
Ledus.S2	AUGUSTUS	start_codon	12971461	12971463	.	+	0	transcript_id "Ledus.S2G174100.t1"; gene_id "Ledus.S2G174100"
Ledus.S2	AUGUSTUS	CDS	12971461	12971730	0.86	+	0	transcript_id "Ledus.S2G174100.t1"; gene_id "Ledus.S2G174100"
Ledus.S2	AUGUSTUS	exon	12971461	12971730	.	+	.	transcript_id "Ledus.S2G174100.t1"; gene_id "Ledus.S2G174100"
Ledus.S2	AUGUSTUS	stop_codon	12971731	12971733	.	+	0	transcript_id "Ledus.S2G174100.t1"; gene_id "Ledus.S2G174100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5313.t1 is derived from g2752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23265923	23271233	.	-	.	Ledus.S1G273400
Ledus.S1	AUGUSTUS	transcript	23265923	23271233	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	stop_codon	23265920	23265922	.	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23265923	23266239	0.99	-	2	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23265923	23266239	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23266240	23266317	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23266318	23266626	0.5	-	2	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23266318	23266626	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23266627	23266705	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23266706	23266821	1	-	1	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23266706	23266821	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23266822	23266940	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23266941	23267020	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23266941	23267020	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23267021	23267121	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23267122	23267191	1	-	1	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23267122	23267191	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23267192	23267273	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23267274	23267373	1	-	2	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23267274	23267373	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23267374	23267454	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23267455	23267530	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23267455	23267530	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23267531	23267634	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23267635	23267709	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23267635	23267709	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23267710	23267843	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23267844	23267897	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23267844	23267897	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23267898	23268071	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23268072	23268161	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23268072	23268161	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23268162	23268329	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23268330	23268446	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23268330	23268446	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23268447	23268564	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23268565	23268675	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23268565	23268675	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23268676	23268781	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23268782	23268921	0.98	-	2	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23268782	23268921	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23268922	23269032	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23269033	23269114	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23269033	23269114	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23269115	23269345	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23269346	23269425	1	-	2	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23269346	23269425	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23269426	23269613	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23269614	23269722	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23269614	23269722	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23269723	23269866	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23269867	23269989	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23269867	23269989	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23269990	23270152	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23270153	23270225	1	-	1	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23270153	23270225	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23270226	23270423	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23270424	23270575	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23270424	23270575	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23270576	23270667	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23270668	23270766	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23270668	23270766	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	intron	23270767	23271110	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	CDS	23271111	23271233	1	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	exon	23271111	23271233	.	-	.	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
Ledus.S1	AUGUSTUS	start_codon	23271231	23271233	.	-	0	transcript_id "Ledus.S1G273400.t1"; gene_id "Ledus.S1G273400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6019.t1 is derived from g3462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28454978	28459546	.	+	.	Ledus.S1G344000
Ledus.S1	AUGUSTUS	transcript	28454978	28459546	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	start_codon	28454978	28454980	.	+	0	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28454978	28456057	1	+	0	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28454978	28456057	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28456058	28456141	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28456142	28456440	1	+	0	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28456142	28456440	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28456441	28456583	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28456584	28456689	0.84	+	1	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28456584	28456689	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28456690	28456768	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28456769	28456872	0.99	+	0	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28456769	28456872	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28456873	28456978	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28456979	28457181	0.99	+	1	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28456979	28457181	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28457182	28457318	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28457319	28457846	1	+	2	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28457319	28457846	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28457847	28457966	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28457967	28458007	1	+	2	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28457967	28458007	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28458008	28458123	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28458124	28458192	1	+	0	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28458124	28458192	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28458193	28458326	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28458327	28458427	1	+	0	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28458327	28458427	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28458428	28458517	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28458518	28458602	1	+	1	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28458518	28458602	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28458603	28458712	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28458713	28458811	1	+	0	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28458713	28458811	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28458812	28458901	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28458902	28458970	1	+	0	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28458902	28458970	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28458971	28459081	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28459082	28459213	1	+	0	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28459082	28459213	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28459214	28459288	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28459289	28459383	1	+	0	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28459289	28459383	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	intron	28459384	28459467	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	CDS	28459468	28459546	1	+	1	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	exon	28459468	28459546	.	+	.	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
Ledus.S1	AUGUSTUS	stop_codon	28459547	28459549	.	+	0	transcript_id "Ledus.S1G344000.t1"; gene_id "Ledus.S1G344000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6391.t1 is derived from g3834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30976685	30977206	.	-	.	Ledus.S1G381200
Ledus.S1	AUGUSTUS	transcript	30976685	30977206	.	-	.	transcript_id "Ledus.S1G381200.t1"; gene_id "Ledus.S1G381200"
Ledus.S1	AUGUSTUS	stop_codon	30976682	30976684	.	-	0	transcript_id "Ledus.S1G381200.t1"; gene_id "Ledus.S1G381200"
Ledus.S1	AUGUSTUS	CDS	30976685	30977206	0.95	-	0	transcript_id "Ledus.S1G381200.t1"; gene_id "Ledus.S1G381200"
Ledus.S1	AUGUSTUS	exon	30976685	30977206	.	-	.	transcript_id "Ledus.S1G381200.t1"; gene_id "Ledus.S1G381200"
Ledus.S1	AUGUSTUS	start_codon	30977204	30977206	.	-	0	transcript_id "Ledus.S1G381200.t1"; gene_id "Ledus.S1G381200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5537.t1 is derived from g2976.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25031180	25033636	.	-	.	Ledus.S1G295800
Ledus.S1	AUGUSTUS	transcript	25031180	25033636	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	stop_codon	25031177	25031179	.	-	0	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25031180	25031207	0.46	-	1	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25031180	25031207	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25031208	25031491	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25031492	25031511	0.42	-	0	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25031492	25031511	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25031512	25032081	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25032082	25032261	0.35	-	0	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25032082	25032261	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25032262	25032366	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25032367	25032499	0.66	-	1	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25032367	25032499	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25032500	25032688	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25032689	25032781	0.99	-	1	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25032689	25032781	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25032782	25032958	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25032959	25032978	1	-	0	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25032959	25032978	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25032979	25033143	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25033144	25033281	1	-	0	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25033144	25033281	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25033282	25033367	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25033368	25033406	1	-	0	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25033368	25033406	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25033407	25033495	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25033496	25033636	0.61	-	0	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25033496	25033636	.	-	.	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	start_codon	25033634	25033636	.	-	0	transcript_id "Ledus.S1G295800.t1"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	transcript	25031180	25033636	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	stop_codon	25031177	25031179	.	-	0	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25031180	25031207	0.5	-	1	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25031180	25031207	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25031208	25031491	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25031492	25031511	0.42	-	0	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25031492	25031511	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25031512	25032081	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25032082	25032261	0.41	-	0	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25032082	25032261	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25032262	25032366	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25032367	25032499	0.78	-	1	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25032367	25032499	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25032500	25032688	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25032689	25032781	0.71	-	1	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25032689	25032781	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25032782	25032900	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25032901	25033037	0.58	-	0	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25032901	25033037	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25033038	25033143	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25033144	25033281	1	-	0	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25033144	25033281	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25033282	25033367	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25033368	25033406	1	-	0	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25033368	25033406	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	intron	25033407	25033495	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	CDS	25033496	25033636	0.45	-	0	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	exon	25033496	25033636	.	-	.	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
Ledus.S1	AUGUSTUS	start_codon	25033634	25033636	.	-	0	transcript_id "Ledus.S1G295800.t2"; gene_id "Ledus.S1G295800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12644.t1 is derived from g6266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13589268	13592706	.	+	.	Ledus.S4G180000
Ledus.S4	AUGUSTUS	transcript	13589268	13592706	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	start_codon	13589268	13589270	.	+	0	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13589268	13589278	0.28	+	0	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13589268	13589278	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	intron	13589279	13589389	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13589390	13589519	0.49	+	1	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13589390	13589519	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	intron	13589520	13589594	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13589595	13589600	1	+	0	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13589595	13589600	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	intron	13589601	13589777	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13589778	13589891	1	+	0	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13589778	13589891	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	intron	13589892	13589988	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13589989	13590076	0.24	+	0	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13589989	13590076	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	intron	13590077	13590222	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13590223	13590303	1	+	2	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13590223	13590303	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	intron	13590304	13590391	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13590392	13590480	1	+	2	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13590392	13590480	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	intron	13590481	13590576	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13590577	13590668	1	+	0	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13590577	13590668	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	intron	13590669	13590770	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13590771	13590852	1	+	1	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13590771	13590852	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	intron	13590853	13591206	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13591207	13591266	1	+	0	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13591207	13591266	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	intron	13591267	13591406	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13591407	13591509	1	+	0	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13591407	13591509	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	intron	13591510	13591608	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13591609	13591694	1	+	2	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13591609	13591694	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	intron	13591695	13591794	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	CDS	13591795	13592706	0.89	+	0	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	exon	13591795	13592706	.	+	.	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
Ledus.S4	AUGUSTUS	stop_codon	13592707	13592709	.	+	0	transcript_id "Ledus.S4G180000.t1"; gene_id "Ledus.S4G180000"
# This transcript jg2863.t2 is derived from g297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2864.t1 is derived from g298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4240235	4242698	.	+	.	Ledus.S1G028500
Ledus.S1	AUGUSTUS	transcript	4240235	4242698	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	start_codon	4240235	4240237	.	+	0	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	CDS	4240235	4240312	0.96	+	0	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	exon	4240235	4240312	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	intron	4240313	4240418	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	CDS	4240419	4240475	1	+	0	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	exon	4240419	4240475	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	intron	4240476	4240696	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	CDS	4240697	4240786	1	+	0	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	exon	4240697	4240786	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	intron	4240787	4240890	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	CDS	4240891	4240925	0.99	+	0	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	exon	4240891	4240925	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	intron	4240926	4241016	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	CDS	4241017	4241164	0.99	+	1	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	exon	4241017	4241164	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	intron	4241165	4241547	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	CDS	4241548	4241607	0.78	+	0	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	exon	4241548	4241607	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	intron	4241608	4241855	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	CDS	4241856	4242698	0.75	+	0	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	exon	4241856	4242698	.	+	.	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
Ledus.S1	AUGUSTUS	stop_codon	4242699	4242701	.	+	0	transcript_id "Ledus.S1G028500.t1"; gene_id "Ledus.S1G028500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5255.t1 is derived from g2694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22756657	22759240	.	+	.	Ledus.S1G267600
Ledus.S1	AUGUSTUS	transcript	22756657	22759240	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	start_codon	22756657	22756659	.	+	0	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	CDS	22756657	22756761	1	+	0	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	exon	22756657	22756761	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	intron	22756762	22757123	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	CDS	22757124	22757172	1	+	0	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	exon	22757124	22757172	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	intron	22757173	22757345	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	CDS	22757346	22757434	1	+	2	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	exon	22757346	22757434	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	intron	22757435	22757527	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	CDS	22757528	22757584	1	+	0	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	exon	22757528	22757584	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	intron	22757585	22757666	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	CDS	22757667	22757729	1	+	0	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	exon	22757667	22757729	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	intron	22757730	22757830	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	CDS	22757831	22757896	1	+	0	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	exon	22757831	22757896	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	intron	22757897	22757988	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	CDS	22757989	22758075	1	+	0	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	exon	22757989	22758075	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	intron	22758076	22758196	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	CDS	22758197	22758290	1	+	0	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	exon	22758197	22758290	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	intron	22758291	22758375	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	CDS	22758376	22759138	1	+	2	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	exon	22758376	22759138	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	intron	22759139	22759233	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	CDS	22759234	22759240	0.97	+	1	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	exon	22759234	22759240	.	+	.	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
Ledus.S1	AUGUSTUS	stop_codon	22759241	22759243	.	+	0	transcript_id "Ledus.S1G267600.t1"; gene_id "Ledus.S1G267600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6054.t1 is derived from g3497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28729957	28736629	.	-	.	Ledus.S1G347500
Ledus.S1	AUGUSTUS	transcript	28729957	28736629	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	stop_codon	28729954	28729956	.	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28729957	28730280	1	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28729957	28730280	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28730281	28730369	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28730370	28730624	1	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28730370	28730624	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28730625	28730710	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28730711	28730882	1	-	1	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28730711	28730882	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28730883	28730958	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28730959	28731186	1	-	1	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28730959	28731186	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28731187	28731281	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28731282	28731415	1	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28731282	28731415	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28731416	28731488	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28731489	28731572	1	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28731489	28731572	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28731573	28731655	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28731656	28731946	1	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28731656	28731946	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28731947	28732046	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28732047	28732379	1	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28732047	28732379	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28732380	28732467	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28732468	28732622	1	-	2	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28732468	28732622	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28732623	28732763	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28732764	28732898	1	-	2	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28732764	28732898	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28732899	28732999	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28733000	28733156	0.99	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28733000	28733156	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28733157	28733262	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28733263	28733366	1	-	2	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28733263	28733366	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28733367	28733481	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28733482	28733642	1	-	1	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28733482	28733642	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28733643	28733777	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28733778	28734094	1	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28733778	28734094	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28734095	28734195	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28734196	28734474	1	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28734196	28734474	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28734475	28734583	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28734584	28734885	1	-	2	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28734584	28734885	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28734886	28734992	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28734993	28735083	0.95	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28734993	28735083	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28735084	28735183	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28735184	28735237	1	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28735184	28735237	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28735238	28735315	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28735316	28735392	1	-	2	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28735316	28735392	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28735393	28735469	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28735470	28735629	1	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28735470	28735629	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28735630	28735707	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28735708	28735792	1	-	1	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28735708	28735792	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28735793	28735865	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28735866	28735954	1	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28735866	28735954	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28735955	28736028	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28736029	28736149	1	-	1	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28736029	28736149	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	intron	28736150	28736225	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	CDS	28736226	28736629	0.83	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	exon	28736226	28736629	.	-	.	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
Ledus.S1	AUGUSTUS	start_codon	28736627	28736629	.	-	0	transcript_id "Ledus.S1G347500.t1"; gene_id "Ledus.S1G347500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10356.t1 is derived from g11386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14374277	14376471	.	-	.	Ledus.S3G183300
Ledus.S3	AUGUSTUS	transcript	14374277	14376471	.	-	.	transcript_id "Ledus.S3G183300.t1"; gene_id "Ledus.S3G183300"
Ledus.S3	AUGUSTUS	stop_codon	14374274	14374276	.	-	0	transcript_id "Ledus.S3G183300.t1"; gene_id "Ledus.S3G183300"
Ledus.S3	AUGUSTUS	CDS	14374277	14374779	1	-	2	transcript_id "Ledus.S3G183300.t1"; gene_id "Ledus.S3G183300"
Ledus.S3	AUGUSTUS	exon	14374277	14374779	.	-	.	transcript_id "Ledus.S3G183300.t1"; gene_id "Ledus.S3G183300"
Ledus.S3	AUGUSTUS	intron	14374780	14374871	.	-	.	transcript_id "Ledus.S3G183300.t1"; gene_id "Ledus.S3G183300"
Ledus.S3	AUGUSTUS	CDS	14374872	14376471	0.4	-	0	transcript_id "Ledus.S3G183300.t1"; gene_id "Ledus.S3G183300"
Ledus.S3	AUGUSTUS	exon	14374872	14376471	.	-	.	transcript_id "Ledus.S3G183300.t1"; gene_id "Ledus.S3G183300"
Ledus.S3	AUGUSTUS	start_codon	14376469	14376471	.	-	0	transcript_id "Ledus.S3G183300.t1"; gene_id "Ledus.S3G183300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2146.t1 is derived from g9009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15263857	15264240	.	-	.	Ledus.S2G202800
Ledus.S2	AUGUSTUS	transcript	15263857	15264240	.	-	.	transcript_id "Ledus.S2G202800.t1"; gene_id "Ledus.S2G202800"
Ledus.S2	AUGUSTUS	stop_codon	15263854	15263856	.	-	0	transcript_id "Ledus.S2G202800.t1"; gene_id "Ledus.S2G202800"
Ledus.S2	AUGUSTUS	CDS	15263857	15264240	0.28	-	0	transcript_id "Ledus.S2G202800.t1"; gene_id "Ledus.S2G202800"
Ledus.S2	AUGUSTUS	exon	15263857	15264240	.	-	.	transcript_id "Ledus.S2G202800.t1"; gene_id "Ledus.S2G202800"
Ledus.S2	AUGUSTUS	start_codon	15264238	15264240	.	-	0	transcript_id "Ledus.S2G202800.t1"; gene_id "Ledus.S2G202800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1340.t1 is derived from g8201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9330311	9332179	.	+	.	Ledus.S2G122200
Ledus.S2	AUGUSTUS	transcript	9330311	9332179	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	start_codon	9330311	9330313	.	+	0	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	CDS	9330311	9330649	0.79	+	0	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	exon	9330311	9330649	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	intron	9330650	9330731	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	CDS	9330732	9330835	1	+	0	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	exon	9330732	9330835	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	intron	9330836	9330919	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	CDS	9330920	9330991	1	+	1	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	exon	9330920	9330991	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	intron	9330992	9331072	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	CDS	9331073	9331211	1	+	1	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	exon	9331073	9331211	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	intron	9331212	9331288	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	CDS	9331289	9331492	1	+	0	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	exon	9331289	9331492	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	intron	9331493	9331575	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	CDS	9331576	9331614	1	+	0	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	exon	9331576	9331614	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	intron	9331615	9331694	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	CDS	9331695	9331805	0.99	+	0	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	exon	9331695	9331805	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	intron	9331806	9331907	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	CDS	9331908	9331973	0.99	+	0	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	exon	9331908	9331973	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	intron	9331974	9332062	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	CDS	9332063	9332179	1	+	0	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	exon	9332063	9332179	.	+	.	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
Ledus.S2	AUGUSTUS	stop_codon	9332180	9332182	.	+	0	transcript_id "Ledus.S2G122200.t1"; gene_id "Ledus.S2G122200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9090.t1 is derived from g10120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4466681	4469554	.	+	.	Ledus.S3G056700
Ledus.S3	AUGUSTUS	transcript	4466681	4469554	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	start_codon	4466681	4466683	.	+	0	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	CDS	4466681	4466740	0.84	+	0	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	exon	4466681	4466740	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	intron	4466741	4466885	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	CDS	4466886	4467106	0.81	+	0	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	exon	4466886	4467106	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	intron	4467107	4467188	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	CDS	4467189	4467421	1	+	1	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	exon	4467189	4467421	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	intron	4467422	4467548	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	CDS	4467549	4467768	1	+	2	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	exon	4467549	4467768	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	intron	4467769	4467862	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	CDS	4467863	4467984	1	+	1	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	exon	4467863	4467984	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	intron	4467985	4468061	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	CDS	4468062	4468315	0.93	+	2	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	exon	4468062	4468315	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	intron	4468316	4468410	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	CDS	4468411	4468518	1	+	0	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	exon	4468411	4468518	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	intron	4468519	4468608	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	CDS	4468609	4468815	1	+	0	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	exon	4468609	4468815	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	intron	4468816	4468904	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	CDS	4468905	4469015	1	+	0	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	exon	4468905	4469015	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	intron	4469016	4469101	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	CDS	4469102	4469275	1	+	0	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	exon	4469102	4469275	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	intron	4469276	4469371	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	CDS	4469372	4469554	1	+	0	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	exon	4469372	4469554	.	+	.	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
Ledus.S3	AUGUSTUS	stop_codon	4469555	4469557	.	+	0	transcript_id "Ledus.S3G056700.t1"; gene_id "Ledus.S3G056700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1920.t1 is derived from g8783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13412527	13413888	.	+	.	Ledus.S2G180200
Ledus.S2	AUGUSTUS	transcript	13412527	13413888	.	+	.	transcript_id "Ledus.S2G180200.t1"; gene_id "Ledus.S2G180200"
Ledus.S2	AUGUSTUS	start_codon	13412527	13412529	.	+	0	transcript_id "Ledus.S2G180200.t1"; gene_id "Ledus.S2G180200"
Ledus.S2	AUGUSTUS	CDS	13412527	13413888	0.69	+	0	transcript_id "Ledus.S2G180200.t1"; gene_id "Ledus.S2G180200"
Ledus.S2	AUGUSTUS	exon	13412527	13413888	.	+	.	transcript_id "Ledus.S2G180200.t1"; gene_id "Ledus.S2G180200"
Ledus.S2	AUGUSTUS	stop_codon	13413889	13413891	.	+	0	transcript_id "Ledus.S2G180200.t1"; gene_id "Ledus.S2G180200"
# This transcript jg3921.t2 is derived from g1357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3922.t1 is derived from g1358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13571460	13573226	.	+	.	Ledus.S1G134300
Ledus.S1	AUGUSTUS	transcript	13571460	13572892	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	start_codon	13571460	13571462	.	+	0	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13571460	13571582	1	+	0	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13571460	13571582	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13571583	13571668	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13571669	13571741	1	+	0	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13571669	13571741	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13571742	13571856	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13571857	13571917	1	+	2	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13571857	13571917	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13571918	13572002	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13572003	13572085	1	+	1	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13572003	13572085	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13572086	13572190	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13572191	13572285	0.98	+	2	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13572191	13572285	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13572286	13572389	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13572390	13572435	0.99	+	0	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13572390	13572435	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13572436	13572545	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13572546	13572625	1	+	2	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13572546	13572625	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13572626	13572712	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13572713	13572798	1	+	0	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13572713	13572798	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13572799	13572882	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13572883	13572892	1	+	1	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13572883	13572892	.	+	.	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	stop_codon	13572893	13572895	.	+	0	transcript_id "Ledus.S1G134300.t1"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	transcript	13571460	13573226	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	start_codon	13571460	13571462	.	+	0	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13571460	13571582	1	+	0	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13571460	13571582	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13571583	13571668	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13571669	13571741	1	+	0	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13571669	13571741	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13571742	13571856	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13571857	13571917	1	+	2	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13571857	13571917	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13571918	13572002	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13572003	13572085	1	+	1	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13572003	13572085	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13572086	13572190	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13572191	13572285	1	+	2	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13572191	13572285	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13572286	13572389	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13572390	13572435	0.98	+	0	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13572390	13572435	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13572436	13572545	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13572546	13572625	1	+	2	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13572546	13572625	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13572626	13572712	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13572713	13572798	1	+	0	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13572713	13572798	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13572799	13572882	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13572883	13572891	0.99	+	1	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13572883	13572891	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13572892	13573038	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13573039	13573067	0.99	+	1	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13573039	13573067	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	intron	13573068	13573140	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	CDS	13573141	13573226	0.99	+	2	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	exon	13573141	13573226	.	+	.	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
Ledus.S1	AUGUSTUS	stop_codon	13573227	13573229	.	+	0	transcript_id "Ledus.S1G134300.t2"; gene_id "Ledus.S1G134300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg3852.t1 is derived from g1288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13183985	13186061	.	+	.	Ledus.S1G127300
Ledus.S1	AUGUSTUS	transcript	13183985	13186061	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	start_codon	13183985	13183987	.	+	0	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13183985	13184057	0.93	+	0	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13183985	13184057	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13184058	13184205	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13184206	13184450	1	+	2	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13184206	13184450	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13184451	13184541	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13184542	13184575	0.92	+	0	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13184542	13184575	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13184576	13184680	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13184681	13184838	0.85	+	2	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13184681	13184838	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13184839	13184941	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13184942	13185011	1	+	0	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13184942	13185011	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185012	13185089	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185090	13185189	1	+	2	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185090	13185189	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185190	13185289	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185290	13185450	1	+	1	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185290	13185450	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185451	13185546	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185547	13185593	1	+	2	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185547	13185593	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185594	13185678	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185679	13185750	1	+	0	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185679	13185750	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185751	13185830	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185831	13186061	1	+	0	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185831	13186061	.	+	.	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	stop_codon	13186062	13186064	.	+	0	transcript_id "Ledus.S1G127300.t1"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	transcript	13183985	13186061	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	start_codon	13183985	13183987	.	+	0	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13183985	13184057	0.97	+	0	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13183985	13184057	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13184058	13184205	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13184206	13184459	1	+	2	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13184206	13184459	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13184460	13184541	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13184542	13184575	0.92	+	0	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13184542	13184575	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13184576	13184680	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13184681	13184838	0.79	+	2	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13184681	13184838	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13184839	13184941	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13184942	13185011	1	+	0	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13184942	13185011	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185012	13185089	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185090	13185189	1	+	2	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185090	13185189	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185190	13185289	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185290	13185450	1	+	1	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185290	13185450	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185451	13185546	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185547	13185593	1	+	2	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185547	13185593	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185594	13185678	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185679	13185750	1	+	0	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185679	13185750	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185751	13185830	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185831	13186061	1	+	0	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185831	13186061	.	+	.	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	stop_codon	13186062	13186064	.	+	0	transcript_id "Ledus.S1G127300.t2"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	transcript	13183985	13186061	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	start_codon	13183985	13183987	.	+	0	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13183985	13184057	0.95	+	0	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13183985	13184057	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13184058	13184205	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13184206	13184459	1	+	2	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13184206	13184459	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13184460	13184541	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13184542	13184575	0.84	+	0	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13184542	13184575	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13184576	13184680	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13184681	13184838	0.76	+	2	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13184681	13184838	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13184839	13184941	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13184942	13185011	1	+	0	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13184942	13185011	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185012	13185089	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185090	13185189	1	+	2	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185090	13185189	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185190	13185289	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185290	13185450	1	+	1	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185290	13185450	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185451	13185546	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185547	13185593	1	+	2	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185547	13185593	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185594	13185678	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185679	13185750	1	+	0	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185679	13185750	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	intron	13185751	13185827	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	CDS	13185828	13186061	1	+	0	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	exon	13185828	13186061	.	+	.	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
Ledus.S1	AUGUSTUS	stop_codon	13186062	13186064	.	+	0	transcript_id "Ledus.S1G127300.t3"; gene_id "Ledus.S1G127300"
# This transcript jg3599.t2 is derived from g1035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3600.t1 is derived from g1036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9946222	9946634	.	-	.	Ledus.S1G102100
Ledus.S1	AUGUSTUS	transcript	9946222	9946634	.	-	.	transcript_id "Ledus.S1G102100.t1"; gene_id "Ledus.S1G102100"
Ledus.S1	AUGUSTUS	stop_codon	9946219	9946221	.	-	0	transcript_id "Ledus.S1G102100.t1"; gene_id "Ledus.S1G102100"
Ledus.S1	AUGUSTUS	CDS	9946222	9946334	0.92	-	2	transcript_id "Ledus.S1G102100.t1"; gene_id "Ledus.S1G102100"
Ledus.S1	AUGUSTUS	exon	9946222	9946334	.	-	.	transcript_id "Ledus.S1G102100.t1"; gene_id "Ledus.S1G102100"
Ledus.S1	AUGUSTUS	intron	9946335	9946454	.	-	.	transcript_id "Ledus.S1G102100.t1"; gene_id "Ledus.S1G102100"
Ledus.S1	AUGUSTUS	CDS	9946455	9946546	0.93	-	1	transcript_id "Ledus.S1G102100.t1"; gene_id "Ledus.S1G102100"
Ledus.S1	AUGUSTUS	exon	9946455	9946546	.	-	.	transcript_id "Ledus.S1G102100.t1"; gene_id "Ledus.S1G102100"
Ledus.S1	AUGUSTUS	intron	9946547	9946623	.	-	.	transcript_id "Ledus.S1G102100.t1"; gene_id "Ledus.S1G102100"
Ledus.S1	AUGUSTUS	CDS	9946624	9946634	0.93	-	0	transcript_id "Ledus.S1G102100.t1"; gene_id "Ledus.S1G102100"
Ledus.S1	AUGUSTUS	exon	9946624	9946634	.	-	.	transcript_id "Ledus.S1G102100.t1"; gene_id "Ledus.S1G102100"
Ledus.S1	AUGUSTUS	start_codon	9946632	9946634	.	-	0	transcript_id "Ledus.S1G102100.t1"; gene_id "Ledus.S1G102100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1972.t1 is derived from g8835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13974514	13976120	.	-	.	Ledus.S2G185400
Ledus.S2	AUGUSTUS	transcript	13974514	13976120	.	-	.	transcript_id "Ledus.S2G185400.t1"; gene_id "Ledus.S2G185400"
Ledus.S2	AUGUSTUS	stop_codon	13974511	13974513	.	-	0	transcript_id "Ledus.S2G185400.t1"; gene_id "Ledus.S2G185400"
Ledus.S2	AUGUSTUS	CDS	13974514	13974606	1	-	0	transcript_id "Ledus.S2G185400.t1"; gene_id "Ledus.S2G185400"
Ledus.S2	AUGUSTUS	exon	13974514	13974606	.	-	.	transcript_id "Ledus.S2G185400.t1"; gene_id "Ledus.S2G185400"
Ledus.S2	AUGUSTUS	intron	13974607	13976075	.	-	.	transcript_id "Ledus.S2G185400.t1"; gene_id "Ledus.S2G185400"
Ledus.S2	AUGUSTUS	CDS	13976076	13976120	0.03	-	0	transcript_id "Ledus.S2G185400.t1"; gene_id "Ledus.S2G185400"
Ledus.S2	AUGUSTUS	exon	13976076	13976120	.	-	.	transcript_id "Ledus.S2G185400.t1"; gene_id "Ledus.S2G185400"
Ledus.S2	AUGUSTUS	start_codon	13976118	13976120	.	-	0	transcript_id "Ledus.S2G185400.t1"; gene_id "Ledus.S2G185400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8437.t1 is derived from g13109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11692275	11694577	.	-	.	Ledus.S5G121500
Ledus.S5	AUGUSTUS	transcript	11692275	11694577	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	stop_codon	11692272	11692274	.	-	0	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	CDS	11692275	11692394	0.99	-	0	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	exon	11692275	11692394	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	intron	11692395	11692472	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	CDS	11692473	11692542	1	-	1	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	exon	11692473	11692542	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	intron	11692543	11692634	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	CDS	11692635	11692798	1	-	0	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	exon	11692635	11692798	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	intron	11692799	11692895	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	CDS	11692896	11692949	1	-	0	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	exon	11692896	11692949	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	intron	11692950	11693042	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	CDS	11693043	11693083	1	-	2	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	exon	11693043	11693083	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	intron	11693084	11693222	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	CDS	11693223	11693315	1	-	2	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	exon	11693223	11693315	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	intron	11693316	11693441	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	CDS	11693442	11693529	1	-	0	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	exon	11693442	11693529	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	intron	11693530	11693615	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	CDS	11693616	11693669	1	-	0	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	exon	11693616	11693669	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	intron	11693670	11693754	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	CDS	11693755	11693873	1	-	2	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	exon	11693755	11693873	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	intron	11693874	11693968	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	CDS	11693969	11694058	1	-	2	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	exon	11693969	11694058	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	intron	11694059	11694182	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	CDS	11694183	11694315	0.81	-	0	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	exon	11694183	11694315	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	intron	11694316	11694424	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	CDS	11694425	11694577	0.91	-	0	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	exon	11694425	11694577	.	-	.	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
Ledus.S5	AUGUSTUS	start_codon	11694575	11694577	.	-	0	transcript_id "Ledus.S5G121500.t1"; gene_id "Ledus.S5G121500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8387.t1 is derived from g13059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11431520	11434217	.	-	.	Ledus.S5G116500
Ledus.S5	AUGUSTUS	transcript	11431520	11434217	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	stop_codon	11431517	11431519	.	-	0	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	CDS	11431520	11431699	1	-	0	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	exon	11431520	11431699	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	intron	11431700	11431790	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	CDS	11431791	11431937	1	-	0	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	exon	11431791	11431937	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	intron	11431938	11432015	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	CDS	11432016	11432075	1	-	0	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	exon	11432016	11432075	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	intron	11432076	11432205	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	CDS	11432206	11432312	1	-	2	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	exon	11432206	11432312	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	intron	11432313	11432442	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	CDS	11432443	11432535	0.86	-	2	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	exon	11432443	11432535	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	intron	11432536	11432639	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	CDS	11432640	11432712	1	-	0	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	exon	11432640	11432712	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	intron	11432713	11432870	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	CDS	11432871	11432969	1	-	0	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	exon	11432871	11432969	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	intron	11432970	11433062	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	CDS	11433063	11433203	1	-	0	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	exon	11433063	11433203	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	intron	11433204	11433293	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	CDS	11433294	11433464	0.89	-	0	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	exon	11433294	11433464	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	intron	11433465	11433594	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	CDS	11433595	11433935	0.75	-	2	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	exon	11433595	11433935	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	intron	11433936	11434177	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	CDS	11434178	11434217	0.77	-	0	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	exon	11434178	11434217	.	-	.	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
Ledus.S5	AUGUSTUS	start_codon	11434215	11434217	.	-	0	transcript_id "Ledus.S5G116500.t1"; gene_id "Ledus.S5G116500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3276.t1 is derived from g711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7214928	7215218	.	+	.	Ledus.S1G069700
Ledus.S1	AUGUSTUS	transcript	7214928	7215218	.	+	.	transcript_id "Ledus.S1G069700.t1"; gene_id "Ledus.S1G069700"
Ledus.S1	AUGUSTUS	start_codon	7214928	7214930	.	+	0	transcript_id "Ledus.S1G069700.t1"; gene_id "Ledus.S1G069700"
Ledus.S1	AUGUSTUS	CDS	7214928	7215218	0.99	+	0	transcript_id "Ledus.S1G069700.t1"; gene_id "Ledus.S1G069700"
Ledus.S1	AUGUSTUS	exon	7214928	7215218	.	+	.	transcript_id "Ledus.S1G069700.t1"; gene_id "Ledus.S1G069700"
Ledus.S1	AUGUSTUS	stop_codon	7215219	7215221	.	+	0	transcript_id "Ledus.S1G069700.t1"; gene_id "Ledus.S1G069700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7316.t1 is derived from g11987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1136405	1142874	.	+	.	Ledus.S5G009400
Ledus.S5	AUGUSTUS	transcript	1136405	1142874	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	start_codon	1136405	1136407	.	+	0	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1136405	1136502	0.68	+	0	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1136405	1136502	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1136503	1136792	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1136793	1136904	1	+	1	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1136793	1136904	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1136905	1137045	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1137046	1137145	1	+	0	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1137046	1137145	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1137146	1137269	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1137270	1138049	0.57	+	2	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1137270	1138049	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1138050	1138157	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1138158	1138216	0.99	+	2	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1138158	1138216	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1138217	1138324	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1138325	1138399	1	+	0	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1138325	1138399	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1138400	1138525	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1138526	1138663	0.96	+	0	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1138526	1138663	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1138664	1138780	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1138781	1139002	0.73	+	0	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1138781	1139002	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1139003	1139686	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1139687	1140010	0.76	+	0	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1139687	1140010	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1140011	1140260	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1140261	1140590	0.95	+	0	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1140261	1140590	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1140591	1140686	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1140687	1140878	1	+	0	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1140687	1140878	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1140879	1140976	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1140977	1141065	1	+	0	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1140977	1141065	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1141066	1141175	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1141176	1141252	0.45	+	1	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1141176	1141252	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1141253	1141377	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1141378	1141386	0.45	+	2	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1141378	1141386	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	intron	1141387	1141777	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	CDS	1141778	1142874	0.86	+	2	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	exon	1141778	1142874	.	+	.	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
Ledus.S5	AUGUSTUS	stop_codon	1142875	1142877	.	+	0	transcript_id "Ledus.S5G009400.t1"; gene_id "Ledus.S5G009400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2135.t1 is derived from g8998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15023522	15023865	.	+	.	Ledus.S2G201700
Ledus.S2	AUGUSTUS	transcript	15023522	15023865	.	+	.	transcript_id "Ledus.S2G201700.t1"; gene_id "Ledus.S2G201700"
Ledus.S2	AUGUSTUS	start_codon	15023522	15023524	.	+	0	transcript_id "Ledus.S2G201700.t1"; gene_id "Ledus.S2G201700"
Ledus.S2	AUGUSTUS	CDS	15023522	15023542	0.63	+	0	transcript_id "Ledus.S2G201700.t1"; gene_id "Ledus.S2G201700"
Ledus.S2	AUGUSTUS	exon	15023522	15023542	.	+	.	transcript_id "Ledus.S2G201700.t1"; gene_id "Ledus.S2G201700"
Ledus.S2	AUGUSTUS	intron	15023543	15023670	.	+	.	transcript_id "Ledus.S2G201700.t1"; gene_id "Ledus.S2G201700"
Ledus.S2	AUGUSTUS	CDS	15023671	15023865	0.87	+	0	transcript_id "Ledus.S2G201700.t1"; gene_id "Ledus.S2G201700"
Ledus.S2	AUGUSTUS	exon	15023671	15023865	.	+	.	transcript_id "Ledus.S2G201700.t1"; gene_id "Ledus.S2G201700"
Ledus.S2	AUGUSTUS	stop_codon	15023866	15023868	.	+	0	transcript_id "Ledus.S2G201700.t1"; gene_id "Ledus.S2G201700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12733.t1 is derived from g6355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14147053	14148642	.	+	.	Ledus.S4G188900
Ledus.S4	AUGUSTUS	transcript	14147053	14148642	.	+	.	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	start_codon	14147053	14147055	.	+	0	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	CDS	14147053	14147263	1	+	0	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	exon	14147053	14147263	.	+	.	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	intron	14147264	14147641	.	+	.	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	CDS	14147642	14147694	1	+	2	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	exon	14147642	14147694	.	+	.	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	intron	14147695	14147776	.	+	.	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	CDS	14147777	14147941	1	+	0	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	exon	14147777	14147941	.	+	.	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	intron	14147942	14148057	.	+	.	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	CDS	14148058	14148159	1	+	0	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	exon	14148058	14148159	.	+	.	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	intron	14148160	14148522	.	+	.	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	CDS	14148523	14148642	0.99	+	0	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	exon	14148523	14148642	.	+	.	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
Ledus.S4	AUGUSTUS	stop_codon	14148643	14148645	.	+	0	transcript_id "Ledus.S4G188900.t1"; gene_id "Ledus.S4G188900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8034.t1 is derived from g12705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8644762	8647104	.	+	.	Ledus.S5G081200
Ledus.S5	AUGUSTUS	transcript	8644762	8647104	.	+	.	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	start_codon	8644762	8644764	.	+	0	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	CDS	8644762	8644826	0.29	+	0	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	exon	8644762	8644826	.	+	.	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	intron	8644827	8645184	.	+	.	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	CDS	8645185	8645367	0.56	+	1	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	exon	8645185	8645367	.	+	.	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	intron	8645368	8645501	.	+	.	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	CDS	8645502	8645528	0.98	+	1	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	exon	8645502	8645528	.	+	.	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	intron	8645529	8645619	.	+	.	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	CDS	8645620	8646630	0.56	+	1	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	exon	8645620	8646630	.	+	.	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	intron	8646631	8646910	.	+	.	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	CDS	8646911	8646972	0.72	+	1	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	exon	8646911	8646972	.	+	.	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	intron	8646973	8647060	.	+	.	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	CDS	8647061	8647104	0.83	+	2	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	exon	8647061	8647104	.	+	.	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
Ledus.S5	AUGUSTUS	stop_codon	8647105	8647107	.	+	0	transcript_id "Ledus.S5G081200.t1"; gene_id "Ledus.S5G081200"
# This transcript jg4101.t2 is derived from g1537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4102.t1 is derived from g1538.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14698654	14699170	.	+	.	Ledus.S1G152300
Ledus.S1	AUGUSTUS	transcript	14698654	14699170	.	+	.	transcript_id "Ledus.S1G152300.t1"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	start_codon	14698654	14698656	.	+	0	transcript_id "Ledus.S1G152300.t1"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	CDS	14698654	14698724	0.88	+	0	transcript_id "Ledus.S1G152300.t1"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	exon	14698654	14698724	.	+	.	transcript_id "Ledus.S1G152300.t1"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	intron	14698725	14698802	.	+	.	transcript_id "Ledus.S1G152300.t1"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	CDS	14698803	14698858	1	+	1	transcript_id "Ledus.S1G152300.t1"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	exon	14698803	14698858	.	+	.	transcript_id "Ledus.S1G152300.t1"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	intron	14698859	14699069	.	+	.	transcript_id "Ledus.S1G152300.t1"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	CDS	14699070	14699170	0.97	+	2	transcript_id "Ledus.S1G152300.t1"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	exon	14699070	14699170	.	+	.	transcript_id "Ledus.S1G152300.t1"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	stop_codon	14699171	14699173	.	+	0	transcript_id "Ledus.S1G152300.t1"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	transcript	14698709	14699170	.	+	.	transcript_id "Ledus.S1G152300.t2"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	start_codon	14698709	14698711	.	+	0	transcript_id "Ledus.S1G152300.t2"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	CDS	14698709	14698724	0.78	+	0	transcript_id "Ledus.S1G152300.t2"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	exon	14698709	14698724	.	+	.	transcript_id "Ledus.S1G152300.t2"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	intron	14698725	14698802	.	+	.	transcript_id "Ledus.S1G152300.t2"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	CDS	14698803	14698982	0.94	+	2	transcript_id "Ledus.S1G152300.t2"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	exon	14698803	14698982	.	+	.	transcript_id "Ledus.S1G152300.t2"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	intron	14698983	14699069	.	+	.	transcript_id "Ledus.S1G152300.t2"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	CDS	14699070	14699170	0.96	+	2	transcript_id "Ledus.S1G152300.t2"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	exon	14699070	14699170	.	+	.	transcript_id "Ledus.S1G152300.t2"; gene_id "Ledus.S1G152300"
Ledus.S1	AUGUSTUS	stop_codon	14699171	14699173	.	+	0	transcript_id "Ledus.S1G152300.t2"; gene_id "Ledus.S1G152300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12044.t1 is derived from g5663.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9158586	9162231	.	+	.	Ledus.S4G120000
Ledus.S4	AUGUSTUS	transcript	9158586	9162231	.	+	.	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	start_codon	9158586	9158588	.	+	0	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	CDS	9158586	9159800	1	+	0	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	exon	9158586	9159800	.	+	.	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	intron	9159801	9159956	.	+	.	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	CDS	9159957	9160907	0.95	+	0	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	exon	9159957	9160907	.	+	.	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	intron	9160908	9161082	.	+	.	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	CDS	9161083	9161802	0.93	+	0	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	exon	9161083	9161802	.	+	.	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	intron	9161803	9161915	.	+	.	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	CDS	9161916	9162030	0.4	+	0	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	exon	9161916	9162030	.	+	.	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	intron	9162031	9162160	.	+	.	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	CDS	9162161	9162231	0.51	+	2	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	exon	9162161	9162231	.	+	.	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
Ledus.S4	AUGUSTUS	stop_codon	9162232	9162234	.	+	0	transcript_id "Ledus.S4G120000.t1"; gene_id "Ledus.S4G120000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5201.t1 is derived from g2640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22438130	22439115	.	+	.	Ledus.S1G262200
Ledus.S1	AUGUSTUS	transcript	22438130	22439115	.	+	.	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	start_codon	22438130	22438132	.	+	0	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	CDS	22438130	22438432	0.36	+	0	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	exon	22438130	22438432	.	+	.	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	intron	22438433	22438514	.	+	.	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	CDS	22438515	22438556	1	+	0	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	exon	22438515	22438556	.	+	.	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	intron	22438557	22438643	.	+	.	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	CDS	22438644	22438774	1	+	0	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	exon	22438644	22438774	.	+	.	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	intron	22438775	22438856	.	+	.	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	CDS	22438857	22438901	1	+	1	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	exon	22438857	22438901	.	+	.	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	intron	22438902	22438994	.	+	.	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	CDS	22438995	22439115	1	+	1	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	exon	22438995	22439115	.	+	.	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
Ledus.S1	AUGUSTUS	stop_codon	22439116	22439118	.	+	0	transcript_id "Ledus.S1G262200.t1"; gene_id "Ledus.S1G262200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12842.t1 is derived from g11876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	93590	95853	.	+	.	Ledus.C11G000600
Ledus.C11	AUGUSTUS	transcript	93590	95853	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	start_codon	93590	93592	.	+	0	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	CDS	93590	93684	0.94	+	0	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	exon	93590	93684	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	intron	93685	93839	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	CDS	93840	93882	1	+	1	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	exon	93840	93882	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	intron	93883	94115	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	CDS	94116	94156	0.97	+	0	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	exon	94116	94156	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	intron	94157	94281	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	CDS	94282	94297	0.97	+	1	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	exon	94282	94297	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	intron	94298	94501	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	CDS	94502	94570	0.96	+	0	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	exon	94502	94570	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	intron	94571	94665	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	CDS	94666	94683	0.99	+	0	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	exon	94666	94683	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	intron	94684	94840	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	CDS	94841	94935	1	+	0	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	exon	94841	94935	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	intron	94936	95263	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	CDS	95264	95289	0.95	+	1	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	exon	95264	95289	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	intron	95290	95436	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	CDS	95437	95485	0.58	+	2	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	exon	95437	95485	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	intron	95486	95786	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	CDS	95787	95853	0.64	+	1	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	exon	95787	95853	.	+	.	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
Ledus.C11	AUGUSTUS	stop_codon	95854	95856	.	+	0	transcript_id "Ledus.C11G000600.t1"; gene_id "Ledus.C11G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4417.t1 is derived from g1853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17010032	17012577	.	+	.	Ledus.S1G183800
Ledus.S1	AUGUSTUS	transcript	17010032	17012577	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	start_codon	17010032	17010034	.	+	0	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	CDS	17010032	17010502	0.86	+	0	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	exon	17010032	17010502	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	intron	17010503	17010614	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	CDS	17010615	17010719	1	+	0	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	exon	17010615	17010719	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	intron	17010720	17010809	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	CDS	17010810	17011100	1	+	0	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	exon	17010810	17011100	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	intron	17011101	17011242	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	CDS	17011243	17011390	0.92	+	0	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	exon	17011243	17011390	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	intron	17011391	17011495	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	CDS	17011496	17011680	0.99	+	2	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	exon	17011496	17011680	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	intron	17011681	17011779	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	CDS	17011780	17011892	1	+	0	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	exon	17011780	17011892	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	intron	17011893	17011992	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	CDS	17011993	17012287	0.87	+	1	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	exon	17011993	17012287	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	intron	17012288	17012412	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	CDS	17012413	17012577	0.98	+	0	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	exon	17012413	17012577	.	+	.	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
Ledus.S1	AUGUSTUS	stop_codon	17012578	17012580	.	+	0	transcript_id "Ledus.S1G183800.t1"; gene_id "Ledus.S1G183800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg516.t1 is derived from g7377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3014118	3014993	.	+	.	Ledus.S2G039800
Ledus.S2	AUGUSTUS	transcript	3014118	3014993	.	+	.	transcript_id "Ledus.S2G039800.t1"; gene_id "Ledus.S2G039800"
Ledus.S2	AUGUSTUS	start_codon	3014118	3014120	.	+	0	transcript_id "Ledus.S2G039800.t1"; gene_id "Ledus.S2G039800"
Ledus.S2	AUGUSTUS	CDS	3014118	3014993	0.97	+	0	transcript_id "Ledus.S2G039800.t1"; gene_id "Ledus.S2G039800"
Ledus.S2	AUGUSTUS	exon	3014118	3014993	.	+	.	transcript_id "Ledus.S2G039800.t1"; gene_id "Ledus.S2G039800"
Ledus.S2	AUGUSTUS	stop_codon	3014994	3014996	.	+	0	transcript_id "Ledus.S2G039800.t1"; gene_id "Ledus.S2G039800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12512.t1 is derived from g6133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12575929	12577409	.	-	.	Ledus.S4G166800
Ledus.S4	AUGUSTUS	transcript	12575929	12577409	.	-	.	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	stop_codon	12575926	12575928	.	-	0	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	CDS	12575929	12576181	0.98	-	1	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	exon	12575929	12576181	.	-	.	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	intron	12576182	12576288	.	-	.	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	CDS	12576289	12576398	0.98	-	0	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	exon	12576289	12576398	.	-	.	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	intron	12576399	12576655	.	-	.	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	CDS	12576656	12576730	1	-	0	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	exon	12576656	12576730	.	-	.	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	intron	12576731	12576848	.	-	.	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	CDS	12576849	12577409	0.9	-	0	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	exon	12576849	12577409	.	-	.	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
Ledus.S4	AUGUSTUS	start_codon	12577407	12577409	.	-	0	transcript_id "Ledus.S4G166800.t1"; gene_id "Ledus.S4G166800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9383.t1 is derived from g10413.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6456003	6457394	.	-	.	Ledus.S3G086000
Ledus.S3	AUGUSTUS	transcript	6456003	6457394	.	-	.	transcript_id "Ledus.S3G086000.t1"; gene_id "Ledus.S3G086000"
Ledus.S3	AUGUSTUS	stop_codon	6456000	6456002	.	-	0	transcript_id "Ledus.S3G086000.t1"; gene_id "Ledus.S3G086000"
Ledus.S3	AUGUSTUS	CDS	6456003	6457394	0.99	-	0	transcript_id "Ledus.S3G086000.t1"; gene_id "Ledus.S3G086000"
Ledus.S3	AUGUSTUS	exon	6456003	6457394	.	-	.	transcript_id "Ledus.S3G086000.t1"; gene_id "Ledus.S3G086000"
Ledus.S3	AUGUSTUS	start_codon	6457392	6457394	.	-	0	transcript_id "Ledus.S3G086000.t1"; gene_id "Ledus.S3G086000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12168.t1 is derived from g5787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10071915	10074598	.	-	.	Ledus.S4G132400
Ledus.S4	AUGUSTUS	transcript	10071915	10074598	.	-	.	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	stop_codon	10071912	10071914	.	-	0	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	CDS	10071915	10073597	0.43	-	0	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	exon	10071915	10073597	.	-	.	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	intron	10073598	10073757	.	-	.	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	CDS	10073758	10073925	1	-	0	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	exon	10073758	10073925	.	-	.	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	intron	10073926	10074016	.	-	.	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	CDS	10074017	10074139	1	-	0	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	exon	10074017	10074139	.	-	.	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	intron	10074140	10074268	.	-	.	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	CDS	10074269	10074598	0.96	-	0	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	exon	10074269	10074598	.	-	.	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
Ledus.S4	AUGUSTUS	start_codon	10074596	10074598	.	-	0	transcript_id "Ledus.S4G132400.t1"; gene_id "Ledus.S4G132400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4908.t1 is derived from g2346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20598150	20598881	.	-	.	Ledus.S1G232900
Ledus.S1	AUGUSTUS	transcript	20598150	20598881	.	-	.	transcript_id "Ledus.S1G232900.t1"; gene_id "Ledus.S1G232900"
Ledus.S1	AUGUSTUS	stop_codon	20598147	20598149	.	-	0	transcript_id "Ledus.S1G232900.t1"; gene_id "Ledus.S1G232900"
Ledus.S1	AUGUSTUS	CDS	20598150	20598881	0.93	-	0	transcript_id "Ledus.S1G232900.t1"; gene_id "Ledus.S1G232900"
Ledus.S1	AUGUSTUS	exon	20598150	20598881	.	-	.	transcript_id "Ledus.S1G232900.t1"; gene_id "Ledus.S1G232900"
Ledus.S1	AUGUSTUS	start_codon	20598879	20598881	.	-	0	transcript_id "Ledus.S1G232900.t1"; gene_id "Ledus.S1G232900"
# This transcript jg13042.t2 is derived from g6852.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13043.t1 is derived from g6853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4062516	4062716	.	-	.	Ledus.S6G010500
Ledus.S6	AUGUSTUS	transcript	4062516	4062716	.	-	.	transcript_id "Ledus.S6G010500.t1"; gene_id "Ledus.S6G010500"
Ledus.S6	AUGUSTUS	stop_codon	4062513	4062515	.	-	0	transcript_id "Ledus.S6G010500.t1"; gene_id "Ledus.S6G010500"
Ledus.S6	AUGUSTUS	CDS	4062516	4062716	1	-	0	transcript_id "Ledus.S6G010500.t1"; gene_id "Ledus.S6G010500"
Ledus.S6	AUGUSTUS	exon	4062516	4062716	.	-	.	transcript_id "Ledus.S6G010500.t1"; gene_id "Ledus.S6G010500"
Ledus.S6	AUGUSTUS	start_codon	4062714	4062716	.	-	0	transcript_id "Ledus.S6G010500.t1"; gene_id "Ledus.S6G010500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2294.t1 is derived from g9157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17060883	17061869	.	+	.	Ledus.S2G217600
Ledus.S2	AUGUSTUS	transcript	17060883	17061869	.	+	.	transcript_id "Ledus.S2G217600.t1"; gene_id "Ledus.S2G217600"
Ledus.S2	AUGUSTUS	start_codon	17060883	17060885	.	+	0	transcript_id "Ledus.S2G217600.t1"; gene_id "Ledus.S2G217600"
Ledus.S2	AUGUSTUS	CDS	17060883	17060930	0.45	+	0	transcript_id "Ledus.S2G217600.t1"; gene_id "Ledus.S2G217600"
Ledus.S2	AUGUSTUS	exon	17060883	17060930	.	+	.	transcript_id "Ledus.S2G217600.t1"; gene_id "Ledus.S2G217600"
Ledus.S2	AUGUSTUS	intron	17060931	17061191	.	+	.	transcript_id "Ledus.S2G217600.t1"; gene_id "Ledus.S2G217600"
Ledus.S2	AUGUSTUS	CDS	17061192	17061869	0.87	+	0	transcript_id "Ledus.S2G217600.t1"; gene_id "Ledus.S2G217600"
Ledus.S2	AUGUSTUS	exon	17061192	17061869	.	+	.	transcript_id "Ledus.S2G217600.t1"; gene_id "Ledus.S2G217600"
Ledus.S2	AUGUSTUS	stop_codon	17061870	17061872	.	+	0	transcript_id "Ledus.S2G217600.t1"; gene_id "Ledus.S2G217600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7821.t1 is derived from g12492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7146919	7150918	.	+	.	Ledus.S5G059900
Ledus.S5	AUGUSTUS	transcript	7146919	7150918	.	+	.	transcript_id "Ledus.S5G059900.t1"; gene_id "Ledus.S5G059900"
Ledus.S5	AUGUSTUS	start_codon	7146919	7146921	.	+	0	transcript_id "Ledus.S5G059900.t1"; gene_id "Ledus.S5G059900"
Ledus.S5	AUGUSTUS	CDS	7146919	7147018	0.88	+	0	transcript_id "Ledus.S5G059900.t1"; gene_id "Ledus.S5G059900"
Ledus.S5	AUGUSTUS	exon	7146919	7147018	.	+	.	transcript_id "Ledus.S5G059900.t1"; gene_id "Ledus.S5G059900"
Ledus.S5	AUGUSTUS	intron	7147019	7150799	.	+	.	transcript_id "Ledus.S5G059900.t1"; gene_id "Ledus.S5G059900"
Ledus.S5	AUGUSTUS	CDS	7150800	7150918	0.01	+	2	transcript_id "Ledus.S5G059900.t1"; gene_id "Ledus.S5G059900"
Ledus.S5	AUGUSTUS	exon	7150800	7150918	.	+	.	transcript_id "Ledus.S5G059900.t1"; gene_id "Ledus.S5G059900"
Ledus.S5	AUGUSTUS	stop_codon	7150919	7150921	.	+	0	transcript_id "Ledus.S5G059900.t1"; gene_id "Ledus.S5G059900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7574.t1 is derived from g12245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4124327	4125479	.	+	.	Ledus.S5G035200
Ledus.S5	AUGUSTUS	transcript	4124327	4125479	.	+	.	transcript_id "Ledus.S5G035200.t1"; gene_id "Ledus.S5G035200"
Ledus.S5	AUGUSTUS	start_codon	4124327	4124329	.	+	0	transcript_id "Ledus.S5G035200.t1"; gene_id "Ledus.S5G035200"
Ledus.S5	AUGUSTUS	CDS	4124327	4124384	1	+	0	transcript_id "Ledus.S5G035200.t1"; gene_id "Ledus.S5G035200"
Ledus.S5	AUGUSTUS	exon	4124327	4124384	.	+	.	transcript_id "Ledus.S5G035200.t1"; gene_id "Ledus.S5G035200"
Ledus.S5	AUGUSTUS	intron	4124385	4124482	.	+	.	transcript_id "Ledus.S5G035200.t1"; gene_id "Ledus.S5G035200"
Ledus.S5	AUGUSTUS	CDS	4124483	4125267	1	+	2	transcript_id "Ledus.S5G035200.t1"; gene_id "Ledus.S5G035200"
Ledus.S5	AUGUSTUS	exon	4124483	4125267	.	+	.	transcript_id "Ledus.S5G035200.t1"; gene_id "Ledus.S5G035200"
Ledus.S5	AUGUSTUS	intron	4125268	4125356	.	+	.	transcript_id "Ledus.S5G035200.t1"; gene_id "Ledus.S5G035200"
Ledus.S5	AUGUSTUS	CDS	4125357	4125479	1	+	0	transcript_id "Ledus.S5G035200.t1"; gene_id "Ledus.S5G035200"
Ledus.S5	AUGUSTUS	exon	4125357	4125479	.	+	.	transcript_id "Ledus.S5G035200.t1"; gene_id "Ledus.S5G035200"
Ledus.S5	AUGUSTUS	stop_codon	4125480	4125482	.	+	0	transcript_id "Ledus.S5G035200.t1"; gene_id "Ledus.S5G035200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg470.t1 is derived from g7331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2758358	2760192	.	-	.	Ledus.S2G035200
Ledus.S2	AUGUSTUS	transcript	2758358	2760192	.	-	.	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	stop_codon	2758355	2758357	.	-	0	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	CDS	2758358	2759002	0.75	-	0	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	exon	2758358	2759002	.	-	.	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	intron	2759003	2759134	.	-	.	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	CDS	2759135	2759266	0.91	-	0	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	exon	2759135	2759266	.	-	.	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	intron	2759267	2759368	.	-	.	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	CDS	2759369	2759467	0.8	-	0	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	exon	2759369	2759467	.	-	.	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	intron	2759468	2759541	.	-	.	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	CDS	2759542	2759647	0.93	-	1	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	exon	2759542	2759647	.	-	.	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	intron	2759648	2759763	.	-	.	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	CDS	2759764	2759908	0.54	-	2	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	exon	2759764	2759908	.	-	.	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	intron	2759909	2760074	.	-	.	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	CDS	2760075	2760192	0.99	-	0	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	exon	2760075	2760192	.	-	.	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
Ledus.S2	AUGUSTUS	start_codon	2760190	2760192	.	-	0	transcript_id "Ledus.S2G035200.t1"; gene_id "Ledus.S2G035200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9581.t1 is derived from g10611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7979022	7980572	.	+	.	Ledus.S3G105800
Ledus.S3	AUGUSTUS	transcript	7979022	7980572	.	+	.	transcript_id "Ledus.S3G105800.t1"; gene_id "Ledus.S3G105800"
Ledus.S3	AUGUSTUS	start_codon	7979022	7979024	.	+	0	transcript_id "Ledus.S3G105800.t1"; gene_id "Ledus.S3G105800"
Ledus.S3	AUGUSTUS	CDS	7979022	7980572	0.98	+	0	transcript_id "Ledus.S3G105800.t1"; gene_id "Ledus.S3G105800"
Ledus.S3	AUGUSTUS	exon	7979022	7980572	.	+	.	transcript_id "Ledus.S3G105800.t1"; gene_id "Ledus.S3G105800"
Ledus.S3	AUGUSTUS	stop_codon	7980573	7980575	.	+	0	transcript_id "Ledus.S3G105800.t1"; gene_id "Ledus.S3G105800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3311.t1 is derived from g746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7432203	7433636	.	+	.	Ledus.S1G073200
Ledus.S1	AUGUSTUS	transcript	7432203	7433636	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	start_codon	7432203	7432205	.	+	0	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	CDS	7432203	7432390	1	+	0	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	exon	7432203	7432390	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	intron	7432391	7432484	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	CDS	7432485	7432689	1	+	1	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	exon	7432485	7432689	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	intron	7432690	7432794	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	CDS	7432795	7432860	1	+	0	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	exon	7432795	7432860	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	intron	7432861	7432980	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	CDS	7432981	7433121	0.99	+	0	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	exon	7432981	7433121	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	intron	7433122	7433237	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	CDS	7433238	7433291	1	+	0	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	exon	7433238	7433291	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	intron	7433292	7433374	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	CDS	7433375	7433467	1	+	0	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	exon	7433375	7433467	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	intron	7433468	7433591	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	CDS	7433592	7433636	1	+	0	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	exon	7433592	7433636	.	+	.	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
Ledus.S1	AUGUSTUS	stop_codon	7433637	7433639	.	+	0	transcript_id "Ledus.S1G073200.t1"; gene_id "Ledus.S1G073200"
# This transcript jg11821.t2 is derived from g5440.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11822.t1 is derived from g5441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6988326	6988628	.	+	.	Ledus.S4G097800
Ledus.S4	AUGUSTUS	transcript	6988326	6988628	.	+	.	transcript_id "Ledus.S4G097800.t1"; gene_id "Ledus.S4G097800"
Ledus.S4	AUGUSTUS	start_codon	6988326	6988328	.	+	0	transcript_id "Ledus.S4G097800.t1"; gene_id "Ledus.S4G097800"
Ledus.S4	AUGUSTUS	CDS	6988326	6988628	0.79	+	0	transcript_id "Ledus.S4G097800.t1"; gene_id "Ledus.S4G097800"
Ledus.S4	AUGUSTUS	exon	6988326	6988628	.	+	.	transcript_id "Ledus.S4G097800.t1"; gene_id "Ledus.S4G097800"
Ledus.S4	AUGUSTUS	stop_codon	6988629	6988631	.	+	0	transcript_id "Ledus.S4G097800.t1"; gene_id "Ledus.S4G097800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3841.t1 is derived from g1277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13068896	13069862	.	+	.	Ledus.S1G126200
Ledus.S1	AUGUSTUS	transcript	13068896	13069862	.	+	.	transcript_id "Ledus.S1G126200.t1"; gene_id "Ledus.S1G126200"
Ledus.S1	AUGUSTUS	start_codon	13068896	13068898	.	+	0	transcript_id "Ledus.S1G126200.t1"; gene_id "Ledus.S1G126200"
Ledus.S1	AUGUSTUS	CDS	13068896	13069138	0.49	+	0	transcript_id "Ledus.S1G126200.t1"; gene_id "Ledus.S1G126200"
Ledus.S1	AUGUSTUS	exon	13068896	13069138	.	+	.	transcript_id "Ledus.S1G126200.t1"; gene_id "Ledus.S1G126200"
Ledus.S1	AUGUSTUS	intron	13069139	13069682	.	+	.	transcript_id "Ledus.S1G126200.t1"; gene_id "Ledus.S1G126200"
Ledus.S1	AUGUSTUS	CDS	13069683	13069862	0.38	+	0	transcript_id "Ledus.S1G126200.t1"; gene_id "Ledus.S1G126200"
Ledus.S1	AUGUSTUS	exon	13069683	13069862	.	+	.	transcript_id "Ledus.S1G126200.t1"; gene_id "Ledus.S1G126200"
Ledus.S1	AUGUSTUS	stop_codon	13069863	13069865	.	+	0	transcript_id "Ledus.S1G126200.t1"; gene_id "Ledus.S1G126200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4548.t1 is derived from g1985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17619507	17619870	.	-	.	Ledus.S1G196900
Ledus.S1	AUGUSTUS	transcript	17619507	17619870	.	-	.	transcript_id "Ledus.S1G196900.t1"; gene_id "Ledus.S1G196900"
Ledus.S1	AUGUSTUS	stop_codon	17619504	17619506	.	-	0	transcript_id "Ledus.S1G196900.t1"; gene_id "Ledus.S1G196900"
Ledus.S1	AUGUSTUS	CDS	17619507	17619662	0.88	-	0	transcript_id "Ledus.S1G196900.t1"; gene_id "Ledus.S1G196900"
Ledus.S1	AUGUSTUS	exon	17619507	17619662	.	-	.	transcript_id "Ledus.S1G196900.t1"; gene_id "Ledus.S1G196900"
Ledus.S1	AUGUSTUS	intron	17619663	17619729	.	-	.	transcript_id "Ledus.S1G196900.t1"; gene_id "Ledus.S1G196900"
Ledus.S1	AUGUSTUS	CDS	17619730	17619870	0.53	-	0	transcript_id "Ledus.S1G196900.t1"; gene_id "Ledus.S1G196900"
Ledus.S1	AUGUSTUS	exon	17619730	17619870	.	-	.	transcript_id "Ledus.S1G196900.t1"; gene_id "Ledus.S1G196900"
Ledus.S1	AUGUSTUS	start_codon	17619868	17619870	.	-	0	transcript_id "Ledus.S1G196900.t1"; gene_id "Ledus.S1G196900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5988.t1 is derived from g3431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28167487	28169328	.	+	.	Ledus.S1G340900
Ledus.S1	AUGUSTUS	transcript	28167487	28169328	.	+	.	transcript_id "Ledus.S1G340900.t1"; gene_id "Ledus.S1G340900"
Ledus.S1	AUGUSTUS	start_codon	28167487	28167489	.	+	0	transcript_id "Ledus.S1G340900.t1"; gene_id "Ledus.S1G340900"
Ledus.S1	AUGUSTUS	CDS	28167487	28169328	0.95	+	0	transcript_id "Ledus.S1G340900.t1"; gene_id "Ledus.S1G340900"
Ledus.S1	AUGUSTUS	exon	28167487	28169328	.	+	.	transcript_id "Ledus.S1G340900.t1"; gene_id "Ledus.S1G340900"
Ledus.S1	AUGUSTUS	stop_codon	28169329	28169331	.	+	0	transcript_id "Ledus.S1G340900.t1"; gene_id "Ledus.S1G340900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8949.t1 is derived from g9979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3389049	3389526	.	+	.	Ledus.S3G042600
Ledus.S3	AUGUSTUS	transcript	3389049	3389526	.	+	.	transcript_id "Ledus.S3G042600.t1"; gene_id "Ledus.S3G042600"
Ledus.S3	AUGUSTUS	start_codon	3389049	3389051	.	+	0	transcript_id "Ledus.S3G042600.t1"; gene_id "Ledus.S3G042600"
Ledus.S3	AUGUSTUS	CDS	3389049	3389145	0.87	+	0	transcript_id "Ledus.S3G042600.t1"; gene_id "Ledus.S3G042600"
Ledus.S3	AUGUSTUS	exon	3389049	3389145	.	+	.	transcript_id "Ledus.S3G042600.t1"; gene_id "Ledus.S3G042600"
Ledus.S3	AUGUSTUS	intron	3389146	3389236	.	+	.	transcript_id "Ledus.S3G042600.t1"; gene_id "Ledus.S3G042600"
Ledus.S3	AUGUSTUS	CDS	3389237	3389283	1	+	2	transcript_id "Ledus.S3G042600.t1"; gene_id "Ledus.S3G042600"
Ledus.S3	AUGUSTUS	exon	3389237	3389283	.	+	.	transcript_id "Ledus.S3G042600.t1"; gene_id "Ledus.S3G042600"
Ledus.S3	AUGUSTUS	intron	3389284	3389373	.	+	.	transcript_id "Ledus.S3G042600.t1"; gene_id "Ledus.S3G042600"
Ledus.S3	AUGUSTUS	CDS	3389374	3389526	0.97	+	0	transcript_id "Ledus.S3G042600.t1"; gene_id "Ledus.S3G042600"
Ledus.S3	AUGUSTUS	exon	3389374	3389526	.	+	.	transcript_id "Ledus.S3G042600.t1"; gene_id "Ledus.S3G042600"
Ledus.S3	AUGUSTUS	stop_codon	3389527	3389529	.	+	0	transcript_id "Ledus.S3G042600.t1"; gene_id "Ledus.S3G042600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12155.t1 is derived from g5774.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10035659	10036336	.	-	.	Ledus.S4G131100
Ledus.S4	AUGUSTUS	transcript	10035659	10036336	.	-	.	transcript_id "Ledus.S4G131100.t1"; gene_id "Ledus.S4G131100"
Ledus.S4	AUGUSTUS	stop_codon	10035656	10035658	.	-	0	transcript_id "Ledus.S4G131100.t1"; gene_id "Ledus.S4G131100"
Ledus.S4	AUGUSTUS	CDS	10035659	10036336	0.97	-	0	transcript_id "Ledus.S4G131100.t1"; gene_id "Ledus.S4G131100"
Ledus.S4	AUGUSTUS	exon	10035659	10036336	.	-	.	transcript_id "Ledus.S4G131100.t1"; gene_id "Ledus.S4G131100"
Ledus.S4	AUGUSTUS	start_codon	10036334	10036336	.	-	0	transcript_id "Ledus.S4G131100.t1"; gene_id "Ledus.S4G131100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3459.t1 is derived from g894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8488525	8489438	.	+	.	Ledus.S1G088000
Ledus.S1	AUGUSTUS	transcript	8488525	8489438	.	+	.	transcript_id "Ledus.S1G088000.t1"; gene_id "Ledus.S1G088000"
Ledus.S1	AUGUSTUS	start_codon	8488525	8488527	.	+	0	transcript_id "Ledus.S1G088000.t1"; gene_id "Ledus.S1G088000"
Ledus.S1	AUGUSTUS	CDS	8488525	8489098	0.68	+	0	transcript_id "Ledus.S1G088000.t1"; gene_id "Ledus.S1G088000"
Ledus.S1	AUGUSTUS	exon	8488525	8489098	.	+	.	transcript_id "Ledus.S1G088000.t1"; gene_id "Ledus.S1G088000"
Ledus.S1	AUGUSTUS	intron	8489099	8489205	.	+	.	transcript_id "Ledus.S1G088000.t1"; gene_id "Ledus.S1G088000"
Ledus.S1	AUGUSTUS	CDS	8489206	8489438	0.96	+	2	transcript_id "Ledus.S1G088000.t1"; gene_id "Ledus.S1G088000"
Ledus.S1	AUGUSTUS	exon	8489206	8489438	.	+	.	transcript_id "Ledus.S1G088000.t1"; gene_id "Ledus.S1G088000"
Ledus.S1	AUGUSTUS	stop_codon	8489439	8489441	.	+	0	transcript_id "Ledus.S1G088000.t1"; gene_id "Ledus.S1G088000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1828.t1 is derived from g8691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12825608	12827580	.	-	.	Ledus.S2G171000
Ledus.S2	AUGUSTUS	transcript	12825608	12827580	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	stop_codon	12825605	12825607	.	-	0	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	CDS	12825608	12825727	0.69	-	0	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	exon	12825608	12825727	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	intron	12825728	12825830	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	CDS	12825831	12825941	0.9	-	0	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	exon	12825831	12825941	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	intron	12825942	12826098	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	CDS	12826099	12826339	1	-	1	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	exon	12826099	12826339	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	intron	12826340	12826487	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	CDS	12826488	12826621	1	-	0	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	exon	12826488	12826621	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	intron	12826622	12826740	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	CDS	12826741	12826812	1	-	0	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	exon	12826741	12826812	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	intron	12826813	12826899	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	CDS	12826900	12826963	1	-	1	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	exon	12826900	12826963	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	intron	12826964	12827096	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	CDS	12827097	12827164	1	-	0	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	exon	12827097	12827164	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	intron	12827165	12827469	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	CDS	12827470	12827580	0.97	-	0	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	exon	12827470	12827580	.	-	.	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
Ledus.S2	AUGUSTUS	start_codon	12827578	12827580	.	-	0	transcript_id "Ledus.S2G171000.t1"; gene_id "Ledus.S2G171000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7710.t1 is derived from g12381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5337413	5337781	.	+	.	Ledus.S5G048800
Ledus.S5	AUGUSTUS	transcript	5337413	5337781	.	+	.	transcript_id "Ledus.S5G048800.t1"; gene_id "Ledus.S5G048800"
Ledus.S5	AUGUSTUS	start_codon	5337413	5337415	.	+	0	transcript_id "Ledus.S5G048800.t1"; gene_id "Ledus.S5G048800"
Ledus.S5	AUGUSTUS	CDS	5337413	5337781	1	+	0	transcript_id "Ledus.S5G048800.t1"; gene_id "Ledus.S5G048800"
Ledus.S5	AUGUSTUS	exon	5337413	5337781	.	+	.	transcript_id "Ledus.S5G048800.t1"; gene_id "Ledus.S5G048800"
Ledus.S5	AUGUSTUS	stop_codon	5337782	5337784	.	+	0	transcript_id "Ledus.S5G048800.t1"; gene_id "Ledus.S5G048800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg934.t1 is derived from g7795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6222462	6225015	.	+	.	Ledus.S2G081600
Ledus.S2	AUGUSTUS	transcript	6222462	6225015	.	+	.	transcript_id "Ledus.S2G081600.t1"; gene_id "Ledus.S2G081600"
Ledus.S2	AUGUSTUS	start_codon	6222462	6222464	.	+	0	transcript_id "Ledus.S2G081600.t1"; gene_id "Ledus.S2G081600"
Ledus.S2	AUGUSTUS	CDS	6222462	6224595	0.94	+	0	transcript_id "Ledus.S2G081600.t1"; gene_id "Ledus.S2G081600"
Ledus.S2	AUGUSTUS	exon	6222462	6224595	.	+	.	transcript_id "Ledus.S2G081600.t1"; gene_id "Ledus.S2G081600"
Ledus.S2	AUGUSTUS	intron	6224596	6224665	.	+	.	transcript_id "Ledus.S2G081600.t1"; gene_id "Ledus.S2G081600"
Ledus.S2	AUGUSTUS	CDS	6224666	6225015	1	+	2	transcript_id "Ledus.S2G081600.t1"; gene_id "Ledus.S2G081600"
Ledus.S2	AUGUSTUS	exon	6224666	6225015	.	+	.	transcript_id "Ledus.S2G081600.t1"; gene_id "Ledus.S2G081600"
Ledus.S2	AUGUSTUS	stop_codon	6225016	6225018	.	+	0	transcript_id "Ledus.S2G081600.t1"; gene_id "Ledus.S2G081600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2456.t1 is derived from g9319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18218249	18218892	.	+	.	Ledus.S2G233800
Ledus.S2	AUGUSTUS	transcript	18218249	18218892	.	+	.	transcript_id "Ledus.S2G233800.t1"; gene_id "Ledus.S2G233800"
Ledus.S2	AUGUSTUS	start_codon	18218249	18218251	.	+	0	transcript_id "Ledus.S2G233800.t1"; gene_id "Ledus.S2G233800"
Ledus.S2	AUGUSTUS	CDS	18218249	18218371	0.81	+	0	transcript_id "Ledus.S2G233800.t1"; gene_id "Ledus.S2G233800"
Ledus.S2	AUGUSTUS	exon	18218249	18218371	.	+	.	transcript_id "Ledus.S2G233800.t1"; gene_id "Ledus.S2G233800"
Ledus.S2	AUGUSTUS	intron	18218372	18218574	.	+	.	transcript_id "Ledus.S2G233800.t1"; gene_id "Ledus.S2G233800"
Ledus.S2	AUGUSTUS	CDS	18218575	18218892	0.72	+	0	transcript_id "Ledus.S2G233800.t1"; gene_id "Ledus.S2G233800"
Ledus.S2	AUGUSTUS	exon	18218575	18218892	.	+	.	transcript_id "Ledus.S2G233800.t1"; gene_id "Ledus.S2G233800"
Ledus.S2	AUGUSTUS	stop_codon	18218893	18218895	.	+	0	transcript_id "Ledus.S2G233800.t1"; gene_id "Ledus.S2G233800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5471.t1 is derived from g2910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24462599	24462882	.	-	.	Ledus.S1G289200
Ledus.S1	AUGUSTUS	transcript	24462599	24462882	.	-	.	transcript_id "Ledus.S1G289200.t1"; gene_id "Ledus.S1G289200"
Ledus.S1	AUGUSTUS	stop_codon	24462596	24462598	.	-	0	transcript_id "Ledus.S1G289200.t1"; gene_id "Ledus.S1G289200"
Ledus.S1	AUGUSTUS	CDS	24462599	24462787	0.58	-	0	transcript_id "Ledus.S1G289200.t1"; gene_id "Ledus.S1G289200"
Ledus.S1	AUGUSTUS	exon	24462599	24462787	.	-	.	transcript_id "Ledus.S1G289200.t1"; gene_id "Ledus.S1G289200"
Ledus.S1	AUGUSTUS	intron	24462788	24462858	.	-	.	transcript_id "Ledus.S1G289200.t1"; gene_id "Ledus.S1G289200"
Ledus.S1	AUGUSTUS	CDS	24462859	24462882	0.58	-	0	transcript_id "Ledus.S1G289200.t1"; gene_id "Ledus.S1G289200"
Ledus.S1	AUGUSTUS	exon	24462859	24462882	.	-	.	transcript_id "Ledus.S1G289200.t1"; gene_id "Ledus.S1G289200"
Ledus.S1	AUGUSTUS	start_codon	24462880	24462882	.	-	0	transcript_id "Ledus.S1G289200.t1"; gene_id "Ledus.S1G289200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5175.t1 is derived from g2614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22158933	22161386	.	-	.	Ledus.S1G259600
Ledus.S1	AUGUSTUS	transcript	22158933	22161386	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	stop_codon	22158930	22158932	.	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22158933	22158965	1	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22158933	22158965	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	intron	22158966	22159065	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22159066	22159152	1	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22159066	22159152	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	intron	22159153	22159254	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22159255	22159332	0.96	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22159255	22159332	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	intron	22159333	22159449	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22159450	22159545	1	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22159450	22159545	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	intron	22159546	22159629	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22159630	22159716	1	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22159630	22159716	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	intron	22159717	22159813	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22159814	22159882	1	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22159814	22159882	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	intron	22159883	22160060	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22160061	22160150	1	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22160061	22160150	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	intron	22160151	22160231	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22160232	22160329	1	-	2	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22160232	22160329	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	intron	22160330	22160424	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22160425	22160482	1	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22160425	22160482	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	intron	22160483	22160565	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22160566	22160625	1	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22160566	22160625	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	intron	22160626	22160734	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22160735	22160770	1	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22160735	22160770	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	intron	22160771	22160857	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22160858	22160969	1	-	1	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22160858	22160969	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	intron	22160970	22161153	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	CDS	22161154	22161386	0.84	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	exon	22161154	22161386	.	-	.	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
Ledus.S1	AUGUSTUS	start_codon	22161384	22161386	.	-	0	transcript_id "Ledus.S1G259600.t1"; gene_id "Ledus.S1G259600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6464.t1 is derived from g3907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31382158	31386031	.	-	.	Ledus.S1G388500
Ledus.S1	AUGUSTUS	transcript	31382158	31386031	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	stop_codon	31382155	31382157	.	-	0	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	CDS	31382158	31382173	1	-	1	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	exon	31382158	31382173	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	intron	31382174	31382396	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	CDS	31382397	31382442	1	-	2	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	exon	31382397	31382442	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	intron	31382443	31382626	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	CDS	31382627	31382679	1	-	1	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	exon	31382627	31382679	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	intron	31382680	31382962	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	CDS	31382963	31383094	1	-	1	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	exon	31382963	31383094	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	intron	31383095	31383232	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	CDS	31383233	31383350	1	-	2	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	exon	31383233	31383350	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	intron	31383351	31383452	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	CDS	31383453	31384246	0.99	-	1	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	exon	31383453	31384246	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	intron	31384247	31384513	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	CDS	31384514	31384716	0.38	-	0	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	exon	31384514	31384716	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	intron	31384717	31384830	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	CDS	31384831	31384936	0.6	-	1	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	exon	31384831	31384936	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	intron	31384937	31385492	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	CDS	31385493	31386031	0.89	-	0	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	exon	31385493	31386031	.	-	.	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
Ledus.S1	AUGUSTUS	start_codon	31386029	31386031	.	-	0	transcript_id "Ledus.S1G388500.t1"; gene_id "Ledus.S1G388500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1925.t1 is derived from g8788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13461970	13468920	.	-	.	Ledus.S2G180700
Ledus.S2	AUGUSTUS	transcript	13461970	13468920	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	stop_codon	13461967	13461969	.	-	0	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	CDS	13461970	13462157	0.49	-	2	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	exon	13461970	13462157	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	intron	13462158	13462250	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	CDS	13462251	13462317	0.6	-	0	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	exon	13462251	13462317	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	intron	13462318	13462410	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	CDS	13462411	13462671	0.98	-	0	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	exon	13462411	13462671	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	intron	13462672	13462791	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	CDS	13462792	13464435	0.99	-	0	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	exon	13462792	13464435	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	intron	13464436	13464551	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	CDS	13464552	13464722	1	-	0	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	exon	13464552	13464722	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	intron	13464723	13464832	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	CDS	13464833	13464959	1	-	1	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	exon	13464833	13464959	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	intron	13464960	13465119	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	CDS	13465120	13465388	0.6	-	0	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	exon	13465120	13465388	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	intron	13465389	13465554	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	CDS	13465555	13466559	0.87	-	0	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	exon	13465555	13466559	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	intron	13466560	13466667	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	CDS	13466668	13467021	1	-	0	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	exon	13466668	13467021	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	intron	13467022	13467132	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	CDS	13467133	13467286	0.98	-	1	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	exon	13467133	13467286	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	intron	13467287	13467398	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	CDS	13467399	13468202	0.99	-	1	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	exon	13467399	13468202	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	intron	13468203	13468312	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	CDS	13468313	13468920	0.99	-	0	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	exon	13468313	13468920	.	-	.	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
Ledus.S2	AUGUSTUS	start_codon	13468918	13468920	.	-	0	transcript_id "Ledus.S2G180700.t1"; gene_id "Ledus.S2G180700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3574.t1 is derived from g1010.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9723557	9723862	.	+	.	Ledus.S1G099500
Ledus.S1	AUGUSTUS	transcript	9723557	9723862	.	+	.	transcript_id "Ledus.S1G099500.t1"; gene_id "Ledus.S1G099500"
Ledus.S1	AUGUSTUS	start_codon	9723557	9723559	.	+	0	transcript_id "Ledus.S1G099500.t1"; gene_id "Ledus.S1G099500"
Ledus.S1	AUGUSTUS	CDS	9723557	9723862	0.98	+	0	transcript_id "Ledus.S1G099500.t1"; gene_id "Ledus.S1G099500"
Ledus.S1	AUGUSTUS	exon	9723557	9723862	.	+	.	transcript_id "Ledus.S1G099500.t1"; gene_id "Ledus.S1G099500"
Ledus.S1	AUGUSTUS	stop_codon	9723863	9723865	.	+	0	transcript_id "Ledus.S1G099500.t1"; gene_id "Ledus.S1G099500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7216.t1 is derived from g6747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2281978	2282355	.	+	.	Ledus.C7G027700
Ledus.C7	AUGUSTUS	transcript	2281978	2282355	.	+	.	transcript_id "Ledus.C7G027700.t1"; gene_id "Ledus.C7G027700"
Ledus.C7	AUGUSTUS	start_codon	2281978	2281980	.	+	0	transcript_id "Ledus.C7G027700.t1"; gene_id "Ledus.C7G027700"
Ledus.C7	AUGUSTUS	CDS	2281978	2282355	0.75	+	0	transcript_id "Ledus.C7G027700.t1"; gene_id "Ledus.C7G027700"
Ledus.C7	AUGUSTUS	exon	2281978	2282355	.	+	.	transcript_id "Ledus.C7G027700.t1"; gene_id "Ledus.C7G027700"
Ledus.C7	AUGUSTUS	stop_codon	2282356	2282358	.	+	0	transcript_id "Ledus.C7G027700.t1"; gene_id "Ledus.C7G027700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2631.t1 is derived from g64.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	944457	947881	.	+	.	Ledus.S1G005200
Ledus.S1	AUGUSTUS	transcript	944457	947624	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	start_codon	944457	944459	.	+	0	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	944457	944841	0.54	+	0	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	944457	944841	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	944842	944955	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	944956	945445	0.99	+	2	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	944956	945445	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	945446	945566	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	945567	945642	1	+	1	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	945567	945642	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	945643	945744	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	945745	945837	1	+	0	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	945745	945837	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	945838	946082	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	946083	946169	0.96	+	0	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	946083	946169	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	946170	946288	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	946289	947217	1	+	0	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	946289	947217	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	947218	947366	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	947367	947501	1	+	1	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	947367	947501	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	947502	947578	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	947579	947624	0.74	+	1	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	947579	947624	.	+	.	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	stop_codon	947625	947627	.	+	0	transcript_id "Ledus.S1G005200.t1"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	transcript	944457	947881	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	start_codon	944457	944459	.	+	0	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	944457	944841	0.46	+	0	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	944457	944841	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	944842	944955	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	944956	945445	1	+	2	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	944956	945445	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	945446	945566	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	945567	945642	1	+	1	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	945567	945642	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	945643	945744	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	945745	945837	1	+	0	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	945745	945837	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	945838	946082	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	946083	946169	0.98	+	0	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	946083	946169	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	946170	946288	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	946289	947217	1	+	0	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	946289	947217	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	947218	947366	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	947367	947501	1	+	1	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	947367	947501	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	947502	947589	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	947590	947595	0.87	+	1	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	947590	947595	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	947596	947659	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	947660	947683	1	+	1	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	947660	947683	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	intron	947684	947772	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	CDS	947773	947881	0.74	+	1	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	exon	947773	947881	.	+	.	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
Ledus.S1	AUGUSTUS	stop_codon	947882	947884	.	+	0	transcript_id "Ledus.S1G005200.t2"; gene_id "Ledus.S1G005200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2978.t1 is derived from g413.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5053944	5057363	.	-	.	Ledus.S1G039900
Ledus.S1	AUGUSTUS	transcript	5053944	5057363	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	stop_codon	5053941	5053943	.	-	0	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	CDS	5053944	5054038	1	-	2	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	exon	5053944	5054038	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	intron	5054039	5054149	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	CDS	5054150	5054234	0.99	-	0	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	exon	5054150	5054234	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	intron	5054235	5054398	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	CDS	5054399	5054464	1	-	0	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	exon	5054399	5054464	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	intron	5054465	5054563	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	CDS	5054564	5054665	1	-	0	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	exon	5054564	5054665	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	intron	5054666	5054796	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	CDS	5054797	5054934	1	-	0	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	exon	5054797	5054934	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	intron	5054935	5055109	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	CDS	5055110	5055319	0.99	-	0	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	exon	5055110	5055319	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	intron	5055320	5055467	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	CDS	5055468	5055683	1	-	0	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	exon	5055468	5055683	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	intron	5055684	5055810	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	CDS	5055811	5055966	1	-	0	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	exon	5055811	5055966	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	intron	5055967	5056126	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	CDS	5056127	5056234	1	-	0	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	exon	5056127	5056234	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	intron	5056235	5056425	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	CDS	5056426	5057075	0.99	-	2	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	exon	5056426	5057075	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	intron	5057076	5057308	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	CDS	5057309	5057363	0.81	-	0	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	exon	5057309	5057363	.	-	.	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
Ledus.S1	AUGUSTUS	start_codon	5057361	5057363	.	-	0	transcript_id "Ledus.S1G039900.t1"; gene_id "Ledus.S1G039900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10801.t1 is derived from g11833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17837250	17838812	.	+	.	Ledus.S3G227800
Ledus.S3	AUGUSTUS	transcript	17837250	17838812	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	start_codon	17837250	17837252	.	+	0	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	CDS	17837250	17837786	1	+	0	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	exon	17837250	17837786	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	intron	17837787	17837883	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	CDS	17837884	17837939	1	+	0	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	exon	17837884	17837939	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	intron	17837940	17838031	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	CDS	17838032	17838089	1	+	1	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	exon	17838032	17838089	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	intron	17838090	17838215	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	CDS	17838216	17838282	1	+	0	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	exon	17838216	17838282	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	intron	17838283	17838361	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	CDS	17838362	17838417	1	+	2	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	exon	17838362	17838417	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	intron	17838418	17838549	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	CDS	17838550	17838603	1	+	0	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	exon	17838550	17838603	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	intron	17838604	17838731	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	CDS	17838732	17838812	1	+	0	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	exon	17838732	17838812	.	+	.	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
Ledus.S3	AUGUSTUS	stop_codon	17838813	17838815	.	+	0	transcript_id "Ledus.S3G227800.t1"; gene_id "Ledus.S3G227800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4262.t1 is derived from g1698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15808710	15812612	.	+	.	Ledus.S1G168300
Ledus.S1	AUGUSTUS	transcript	15808710	15812612	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	start_codon	15808710	15808712	.	+	0	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	CDS	15808710	15808868	0.7	+	0	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	exon	15808710	15808868	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	intron	15808869	15809085	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	CDS	15809086	15809642	0.58	+	0	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	exon	15809086	15809642	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	intron	15809643	15809728	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	CDS	15809729	15809849	1	+	1	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	exon	15809729	15809849	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	intron	15809850	15809935	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	CDS	15809936	15810021	1	+	0	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	exon	15809936	15810021	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	intron	15810022	15810226	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	CDS	15810227	15810662	1	+	1	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	exon	15810227	15810662	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	intron	15810663	15810836	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	CDS	15810837	15810937	1	+	0	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	exon	15810837	15810937	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	intron	15810938	15811079	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	CDS	15811080	15811146	1	+	1	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	exon	15811080	15811146	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	intron	15811147	15811267	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	CDS	15811268	15811495	0.84	+	0	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	exon	15811268	15811495	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	intron	15811496	15811636	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	CDS	15811637	15812116	0.98	+	0	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	exon	15811637	15812116	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	intron	15812117	15812198	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	CDS	15812199	15812271	0.91	+	0	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	exon	15812199	15812271	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	intron	15812272	15812379	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	CDS	15812380	15812612	0.88	+	2	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	exon	15812380	15812612	.	+	.	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
Ledus.S1	AUGUSTUS	stop_codon	15812613	15812615	.	+	0	transcript_id "Ledus.S1G168300.t1"; gene_id "Ledus.S1G168300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2842.t1 is derived from g276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4131466	4132395	.	-	.	Ledus.S1G026300
Ledus.S1	AUGUSTUS	transcript	4131466	4132395	.	-	.	transcript_id "Ledus.S1G026300.t1"; gene_id "Ledus.S1G026300"
Ledus.S1	AUGUSTUS	stop_codon	4131463	4131465	.	-	0	transcript_id "Ledus.S1G026300.t1"; gene_id "Ledus.S1G026300"
Ledus.S1	AUGUSTUS	CDS	4131466	4131766	1	-	1	transcript_id "Ledus.S1G026300.t1"; gene_id "Ledus.S1G026300"
Ledus.S1	AUGUSTUS	exon	4131466	4131766	.	-	.	transcript_id "Ledus.S1G026300.t1"; gene_id "Ledus.S1G026300"
Ledus.S1	AUGUSTUS	intron	4131767	4131849	.	-	.	transcript_id "Ledus.S1G026300.t1"; gene_id "Ledus.S1G026300"
Ledus.S1	AUGUSTUS	CDS	4131850	4132162	0.98	-	2	transcript_id "Ledus.S1G026300.t1"; gene_id "Ledus.S1G026300"
Ledus.S1	AUGUSTUS	exon	4131850	4132162	.	-	.	transcript_id "Ledus.S1G026300.t1"; gene_id "Ledus.S1G026300"
Ledus.S1	AUGUSTUS	intron	4132163	4132241	.	-	.	transcript_id "Ledus.S1G026300.t1"; gene_id "Ledus.S1G026300"
Ledus.S1	AUGUSTUS	CDS	4132242	4132395	0.93	-	0	transcript_id "Ledus.S1G026300.t1"; gene_id "Ledus.S1G026300"
Ledus.S1	AUGUSTUS	exon	4132242	4132395	.	-	.	transcript_id "Ledus.S1G026300.t1"; gene_id "Ledus.S1G026300"
Ledus.S1	AUGUSTUS	start_codon	4132393	4132395	.	-	0	transcript_id "Ledus.S1G026300.t1"; gene_id "Ledus.S1G026300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4703.t1 is derived from g2141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19135549	19136973	.	-	.	Ledus.S1G212400
Ledus.S1	AUGUSTUS	transcript	19135549	19136973	.	-	.	transcript_id "Ledus.S1G212400.t1"; gene_id "Ledus.S1G212400"
Ledus.S1	AUGUSTUS	stop_codon	19135546	19135548	.	-	0	transcript_id "Ledus.S1G212400.t1"; gene_id "Ledus.S1G212400"
Ledus.S1	AUGUSTUS	CDS	19135549	19136973	0.87	-	0	transcript_id "Ledus.S1G212400.t1"; gene_id "Ledus.S1G212400"
Ledus.S1	AUGUSTUS	exon	19135549	19136973	.	-	.	transcript_id "Ledus.S1G212400.t1"; gene_id "Ledus.S1G212400"
Ledus.S1	AUGUSTUS	start_codon	19136971	19136973	.	-	0	transcript_id "Ledus.S1G212400.t1"; gene_id "Ledus.S1G212400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12243.t1 is derived from g5863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10616152	10618732	.	+	.	Ledus.S4G139900
Ledus.S4	AUGUSTUS	transcript	10616152	10618732	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	start_codon	10616152	10616154	.	+	0	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	CDS	10616152	10616385	0.95	+	0	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	exon	10616152	10616385	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	intron	10616386	10616481	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	CDS	10616482	10616545	1	+	0	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	exon	10616482	10616545	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	intron	10616546	10616638	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	CDS	10616639	10616715	0.79	+	2	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	exon	10616639	10616715	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	intron	10616716	10616819	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	CDS	10616820	10616896	0.99	+	0	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	exon	10616820	10616896	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	intron	10616897	10616987	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	CDS	10616988	10617068	1	+	1	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	exon	10616988	10617068	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	intron	10617069	10617227	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	CDS	10617228	10617360	1	+	1	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	exon	10617228	10617360	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	intron	10617361	10617528	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	CDS	10617529	10617588	1	+	0	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	exon	10617529	10617588	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	intron	10617589	10617733	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	CDS	10617734	10617790	1	+	0	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	exon	10617734	10617790	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	intron	10617791	10618072	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	CDS	10618073	10618168	1	+	0	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	exon	10618073	10618168	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	intron	10618169	10618262	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	CDS	10618263	10618322	1	+	0	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	exon	10618263	10618322	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	intron	10618323	10618414	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	CDS	10618415	10618519	1	+	0	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	exon	10618415	10618519	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	intron	10618520	10618606	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	CDS	10618607	10618732	1	+	0	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	exon	10618607	10618732	.	+	.	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
Ledus.S4	AUGUSTUS	stop_codon	10618733	10618735	.	+	0	transcript_id "Ledus.S4G139900.t1"; gene_id "Ledus.S4G139900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1396.t1 is derived from g8257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9822920	9823657	.	-	.	Ledus.S2G127800
Ledus.S2	AUGUSTUS	transcript	9822920	9823657	.	-	.	transcript_id "Ledus.S2G127800.t1"; gene_id "Ledus.S2G127800"
Ledus.S2	AUGUSTUS	stop_codon	9822917	9822919	.	-	0	transcript_id "Ledus.S2G127800.t1"; gene_id "Ledus.S2G127800"
Ledus.S2	AUGUSTUS	CDS	9822920	9823657	0.43	-	0	transcript_id "Ledus.S2G127800.t1"; gene_id "Ledus.S2G127800"
Ledus.S2	AUGUSTUS	exon	9822920	9823657	.	-	.	transcript_id "Ledus.S2G127800.t1"; gene_id "Ledus.S2G127800"
Ledus.S2	AUGUSTUS	start_codon	9823655	9823657	.	-	0	transcript_id "Ledus.S2G127800.t1"; gene_id "Ledus.S2G127800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12814.t1 is derived from g6436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15016881	15017472	.	+	.	Ledus.S4G197000
Ledus.S4	AUGUSTUS	transcript	15016881	15017472	.	+	.	transcript_id "Ledus.S4G197000.t1"; gene_id "Ledus.S4G197000"
Ledus.S4	AUGUSTUS	start_codon	15016881	15016883	.	+	0	transcript_id "Ledus.S4G197000.t1"; gene_id "Ledus.S4G197000"
Ledus.S4	AUGUSTUS	CDS	15016881	15016960	0.34	+	0	transcript_id "Ledus.S4G197000.t1"; gene_id "Ledus.S4G197000"
Ledus.S4	AUGUSTUS	exon	15016881	15016960	.	+	.	transcript_id "Ledus.S4G197000.t1"; gene_id "Ledus.S4G197000"
Ledus.S4	AUGUSTUS	intron	15016961	15017162	.	+	.	transcript_id "Ledus.S4G197000.t1"; gene_id "Ledus.S4G197000"
Ledus.S4	AUGUSTUS	CDS	15017163	15017472	0.17	+	1	transcript_id "Ledus.S4G197000.t1"; gene_id "Ledus.S4G197000"
Ledus.S4	AUGUSTUS	exon	15017163	15017472	.	+	.	transcript_id "Ledus.S4G197000.t1"; gene_id "Ledus.S4G197000"
Ledus.S4	AUGUSTUS	stop_codon	15017473	15017475	.	+	0	transcript_id "Ledus.S4G197000.t1"; gene_id "Ledus.S4G197000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11835.t1 is derived from g5454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7200118	7201066	.	-	.	Ledus.S4G099100
Ledus.S4	AUGUSTUS	transcript	7200118	7201066	.	-	.	transcript_id "Ledus.S4G099100.t1"; gene_id "Ledus.S4G099100"
Ledus.S4	AUGUSTUS	stop_codon	7200115	7200117	.	-	0	transcript_id "Ledus.S4G099100.t1"; gene_id "Ledus.S4G099100"
Ledus.S4	AUGUSTUS	CDS	7200118	7200773	1	-	2	transcript_id "Ledus.S4G099100.t1"; gene_id "Ledus.S4G099100"
Ledus.S4	AUGUSTUS	exon	7200118	7200773	.	-	.	transcript_id "Ledus.S4G099100.t1"; gene_id "Ledus.S4G099100"
Ledus.S4	AUGUSTUS	intron	7200774	7200864	.	-	.	transcript_id "Ledus.S4G099100.t1"; gene_id "Ledus.S4G099100"
Ledus.S4	AUGUSTUS	CDS	7200865	7201066	1	-	0	transcript_id "Ledus.S4G099100.t1"; gene_id "Ledus.S4G099100"
Ledus.S4	AUGUSTUS	exon	7200865	7201066	.	-	.	transcript_id "Ledus.S4G099100.t1"; gene_id "Ledus.S4G099100"
Ledus.S4	AUGUSTUS	start_codon	7201064	7201066	.	-	0	transcript_id "Ledus.S4G099100.t1"; gene_id "Ledus.S4G099100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9132.t1 is derived from g10162.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4734387	4737223	.	-	.	Ledus.S3G060900
Ledus.S3	AUGUSTUS	transcript	4734387	4737223	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	stop_codon	4734384	4734386	.	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4734387	4734485	1	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4734387	4734485	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4734486	4734574	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4734575	4734634	1	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4734575	4734634	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4734635	4734784	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4734785	4734862	1	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4734785	4734862	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4734863	4734956	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4734957	4735031	1	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4734957	4735031	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4735032	4735126	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4735127	4735162	1	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4735127	4735162	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4735163	4735311	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4735312	4735431	0.99	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4735312	4735431	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4735432	4735601	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4735602	4735685	1	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4735602	4735685	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4735686	4735804	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4735805	4735894	0.97	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4735805	4735894	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4735895	4735995	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4735996	4736133	0.7	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4735996	4736133	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4736134	4736235	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4736236	4736367	0.57	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4736236	4736367	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4736368	4736478	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4736479	4736492	0.57	-	2	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4736479	4736492	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4736493	4736625	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4736626	4737223	0.69	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4736626	4737223	.	-	.	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	start_codon	4737221	4737223	.	-	0	transcript_id "Ledus.S3G060900.t1"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	transcript	4734387	4737223	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	stop_codon	4734384	4734386	.	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4734387	4734485	0.99	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4734387	4734485	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4734486	4734574	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4734575	4734634	1	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4734575	4734634	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4734635	4734784	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4734785	4734862	1	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4734785	4734862	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4734863	4734956	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4734957	4735031	1	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4734957	4735031	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4735032	4735126	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4735127	4735162	1	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4735127	4735162	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4735163	4735311	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4735312	4735374	1	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4735312	4735374	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4735375	4735601	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4735602	4735685	0.98	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4735602	4735685	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4735686	4735804	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4735805	4735894	0.96	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4735805	4735894	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4735895	4735995	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4735996	4736133	0.72	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4735996	4736133	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4736134	4736235	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4736236	4736367	0.52	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4736236	4736367	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4736368	4736478	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4736479	4736492	0.51	-	2	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4736479	4736492	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	intron	4736493	4736625	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	CDS	4736626	4737223	0.66	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	exon	4736626	4737223	.	-	.	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
Ledus.S3	AUGUSTUS	start_codon	4737221	4737223	.	-	0	transcript_id "Ledus.S3G060900.t2"; gene_id "Ledus.S3G060900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12876.t1 is derived from g4449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	293899	294285	.	+	.	Ledus.C10G001900
Ledus.C10	AUGUSTUS	transcript	293899	294285	.	+	.	transcript_id "Ledus.C10G001900.t1"; gene_id "Ledus.C10G001900"
Ledus.C10	AUGUSTUS	start_codon	293899	293901	.	+	0	transcript_id "Ledus.C10G001900.t1"; gene_id "Ledus.C10G001900"
Ledus.C10	AUGUSTUS	CDS	293899	294285	0.55	+	0	transcript_id "Ledus.C10G001900.t1"; gene_id "Ledus.C10G001900"
Ledus.C10	AUGUSTUS	exon	293899	294285	.	+	.	transcript_id "Ledus.C10G001900.t1"; gene_id "Ledus.C10G001900"
Ledus.C10	AUGUSTUS	stop_codon	294286	294288	.	+	0	transcript_id "Ledus.C10G001900.t1"; gene_id "Ledus.C10G001900"
# This transcript jg5979.t2 is derived from g3422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5980.t1 is derived from g3423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28146986	28147540	.	-	.	Ledus.S1G340100
Ledus.S1	AUGUSTUS	transcript	28146986	28147540	.	-	.	transcript_id "Ledus.S1G340100.t1"; gene_id "Ledus.S1G340100"
Ledus.S1	AUGUSTUS	stop_codon	28146983	28146985	.	-	0	transcript_id "Ledus.S1G340100.t1"; gene_id "Ledus.S1G340100"
Ledus.S1	AUGUSTUS	CDS	28146986	28147204	0.34	-	0	transcript_id "Ledus.S1G340100.t1"; gene_id "Ledus.S1G340100"
Ledus.S1	AUGUSTUS	exon	28146986	28147204	.	-	.	transcript_id "Ledus.S1G340100.t1"; gene_id "Ledus.S1G340100"
Ledus.S1	AUGUSTUS	intron	28147205	28147348	.	-	.	transcript_id "Ledus.S1G340100.t1"; gene_id "Ledus.S1G340100"
Ledus.S1	AUGUSTUS	CDS	28147349	28147540	0.28	-	0	transcript_id "Ledus.S1G340100.t1"; gene_id "Ledus.S1G340100"
Ledus.S1	AUGUSTUS	exon	28147349	28147540	.	-	.	transcript_id "Ledus.S1G340100.t1"; gene_id "Ledus.S1G340100"
Ledus.S1	AUGUSTUS	start_codon	28147538	28147540	.	-	0	transcript_id "Ledus.S1G340100.t1"; gene_id "Ledus.S1G340100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8058.t1 is derived from g12729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8953747	8954055	.	-	.	Ledus.S5G083600
Ledus.S5	AUGUSTUS	transcript	8953747	8954055	.	-	.	transcript_id "Ledus.S5G083600.t1"; gene_id "Ledus.S5G083600"
Ledus.S5	AUGUSTUS	stop_codon	8953744	8953746	.	-	0	transcript_id "Ledus.S5G083600.t1"; gene_id "Ledus.S5G083600"
Ledus.S5	AUGUSTUS	CDS	8953747	8954055	0.85	-	0	transcript_id "Ledus.S5G083600.t1"; gene_id "Ledus.S5G083600"
Ledus.S5	AUGUSTUS	exon	8953747	8954055	.	-	.	transcript_id "Ledus.S5G083600.t1"; gene_id "Ledus.S5G083600"
Ledus.S5	AUGUSTUS	start_codon	8954053	8954055	.	-	0	transcript_id "Ledus.S5G083600.t1"; gene_id "Ledus.S5G083600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12430.t1 is derived from g6051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11977946	11991545	.	+	.	Ledus.S4G158600
Ledus.S4	AUGUSTUS	transcript	11977946	11991545	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	start_codon	11977946	11977948	.	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11977946	11978197	0.66	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11977946	11978197	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11978198	11978286	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11978287	11978349	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11978287	11978349	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11978350	11978503	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11978504	11978580	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11978504	11978580	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11978581	11978682	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11978683	11978749	1	+	1	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11978683	11978749	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11978750	11978845	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11978846	11978926	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11978846	11978926	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11978927	11979055	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11979056	11979092	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11979056	11979092	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11979093	11979211	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11979212	11979281	1	+	2	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11979212	11979281	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11979282	11979393	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11979394	11979588	0.99	+	1	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11979394	11979588	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11979589	11979675	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11979676	11979768	1	+	1	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11979676	11979768	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11979769	11979897	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11979898	11980132	1	+	1	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11979898	11980132	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11980133	11980263	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11980264	11980347	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11980264	11980347	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11980348	11980432	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11980433	11980584	0.99	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11980433	11980584	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11980585	11980671	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11980672	11980768	0.99	+	1	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11980672	11980768	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11980769	11980870	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11980871	11981026	0.99	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11980871	11981026	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11981027	11981119	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11981120	11981197	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11981120	11981197	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11981198	11981282	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11981283	11981405	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11981283	11981405	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11981406	11981503	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11981504	11981617	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11981504	11981617	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11981618	11981743	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11981744	11981820	0.9	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11981744	11981820	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11981821	11982136	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11982137	11983006	0.65	+	1	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11982137	11983006	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11983007	11983099	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11983100	11983181	0.59	+	1	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11983100	11983181	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11983182	11983302	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11983303	11983494	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11983303	11983494	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11983495	11983594	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11983595	11983708	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11983595	11983708	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11983709	11983833	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11983834	11983927	0.99	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11983834	11983927	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11983928	11984004	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11984005	11984162	1	+	2	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11984005	11984162	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11984163	11984323	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11984324	11984758	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11984324	11984758	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11984759	11984871	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11984872	11985272	0.99	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11984872	11985272	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11985273	11985516	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11985517	11985997	1	+	1	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11985517	11985997	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11985998	11986084	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11986085	11986291	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11986085	11986291	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11986292	11986410	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11986411	11986593	1	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11986411	11986593	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11986594	11986699	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11986700	11986782	0.92	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11986700	11986782	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11986783	11986873	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11986874	11986933	1	+	1	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11986874	11986933	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11986934	11987128	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11987129	11987420	1	+	1	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11987129	11987420	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11987421	11987531	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11987532	11987821	0.96	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11987532	11987821	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11987822	11987918	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11987919	11988787	1	+	1	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11987919	11988787	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11988788	11988863	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11988864	11989847	1	+	2	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11988864	11989847	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11989848	11989928	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11989929	11990086	0.38	+	2	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11989929	11990086	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11990087	11990160	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11990161	11990263	0.42	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11990161	11990263	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11990264	11990354	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11990355	11990413	0.55	+	2	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11990355	11990413	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	intron	11990414	11991017	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	CDS	11991018	11991545	0.99	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	exon	11991018	11991545	.	+	.	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
Ledus.S4	AUGUSTUS	stop_codon	11991546	11991548	.	+	0	transcript_id "Ledus.S4G158600.t1"; gene_id "Ledus.S4G158600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7072.t1 is derived from g6603.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1201240	1210450	.	-	.	Ledus.C7G013300
Ledus.C7	AUGUSTUS	transcript	1201240	1210450	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	stop_codon	1201237	1201239	.	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1201240	1201392	0.99	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1201240	1201392	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1201393	1201516	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1201517	1202944	1	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1201517	1202944	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1202945	1203085	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1203086	1203461	0.91	-	1	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1203086	1203461	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1203462	1203574	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1203575	1203769	1	-	1	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1203575	1203769	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1203770	1203905	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1203906	1204006	1	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1203906	1204006	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204007	1204160	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1204161	1204241	1	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1204161	1204241	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204242	1204323	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1204324	1204458	1	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1204324	1204458	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204459	1204600	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1204601	1204681	1	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1204601	1204681	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204682	1204861	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1204862	1204915	1	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1204862	1204915	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204916	1204999	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1205000	1205196	1	-	2	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1205000	1205196	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1205197	1205514	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1205515	1205596	1	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1205515	1205596	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1205597	1205856	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1205857	1206594	0.94	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1205857	1206594	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1206595	1206697	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1206698	1206781	0.94	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1206698	1206781	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1206782	1206970	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1206971	1207141	1	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1206971	1207141	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1207142	1207279	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1207280	1207543	1	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1207280	1207543	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1207544	1207629	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1207630	1207752	1	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1207630	1207752	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1207753	1207835	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1207836	1209318	1	-	1	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1207836	1209318	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1209319	1209564	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1209565	1209653	1	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1209565	1209653	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1209654	1209949	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1209950	1210004	1	-	1	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1209950	1210004	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1210005	1210361	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1210362	1210450	1	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1210362	1210450	.	-	.	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	start_codon	1210448	1210450	.	-	0	transcript_id "Ledus.C7G013300.t1"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	transcript	1201240	1210450	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	stop_codon	1201237	1201239	.	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1201240	1201392	0.93	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1201240	1201392	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1201393	1201516	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1201517	1202962	0.96	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1201517	1202962	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1202963	1203085	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1203086	1203461	0.91	-	1	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1203086	1203461	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1203462	1203574	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1203575	1203769	1	-	1	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1203575	1203769	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1203770	1203905	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1203906	1204006	1	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1203906	1204006	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204007	1204160	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1204161	1204241	1	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1204161	1204241	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204242	1204323	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1204324	1204458	1	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1204324	1204458	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204459	1204600	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1204601	1204681	1	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1204601	1204681	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204682	1204861	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1204862	1204915	1	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1204862	1204915	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204916	1204999	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1205000	1205196	1	-	2	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1205000	1205196	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1205197	1205514	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1205515	1205596	1	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1205515	1205596	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1205597	1205856	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1205857	1206594	0.95	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1205857	1206594	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1206595	1206697	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1206698	1206781	0.95	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1206698	1206781	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1206782	1206970	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1206971	1207141	1	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1206971	1207141	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1207142	1207279	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1207280	1207543	1	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1207280	1207543	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1207544	1207629	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1207630	1207752	1	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1207630	1207752	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1207753	1207835	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1207836	1209318	0.99	-	1	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1207836	1209318	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1209319	1209564	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1209565	1209653	1	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1209565	1209653	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1209654	1209949	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1209950	1210004	1	-	1	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1209950	1210004	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1210005	1210361	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1210362	1210450	1	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1210362	1210450	.	-	.	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	start_codon	1210448	1210450	.	-	0	transcript_id "Ledus.C7G013300.t2"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	transcript	1201240	1210450	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	stop_codon	1201237	1201239	.	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1201240	1201392	0.93	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1201240	1201392	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1201393	1201516	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1201517	1202944	0.98	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1201517	1202944	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1202945	1203085	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1203086	1203461	0.97	-	1	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1203086	1203461	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1203462	1203574	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1203575	1203769	1	-	1	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1203575	1203769	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1203770	1203905	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1203906	1204006	1	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1203906	1204006	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204007	1204160	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1204161	1204241	1	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1204161	1204241	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204242	1204323	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1204324	1204458	1	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1204324	1204458	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204459	1204600	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1204601	1204681	1	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1204601	1204681	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204682	1204861	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1204862	1204915	1	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1204862	1204915	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1204916	1204999	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1205000	1205196	1	-	2	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1205000	1205196	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1205197	1205514	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1205515	1205596	1	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1205515	1205596	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1205597	1205856	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1205857	1206594	0.85	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1205857	1206594	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1206595	1206697	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1206698	1206781	0.85	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1206698	1206781	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1206782	1207012	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1207013	1207141	1	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1207013	1207141	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1207142	1207279	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1207280	1207543	1	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1207280	1207543	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1207544	1207629	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1207630	1207752	1	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1207630	1207752	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1207753	1207835	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1207836	1209318	1	-	1	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1207836	1209318	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1209319	1209564	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1209565	1209653	1	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1209565	1209653	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1209654	1209949	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1209950	1210004	1	-	1	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1209950	1210004	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	intron	1210005	1210361	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	CDS	1210362	1210450	1	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	exon	1210362	1210450	.	-	.	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
Ledus.C7	AUGUSTUS	start_codon	1210448	1210450	.	-	0	transcript_id "Ledus.C7G013300.t3"; gene_id "Ledus.C7G013300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6974.t1 is derived from g6505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	505674	506560	.	-	.	Ledus.C7G003500
Ledus.C7	AUGUSTUS	transcript	505674	506560	.	-	.	transcript_id "Ledus.C7G003500.t1"; gene_id "Ledus.C7G003500"
Ledus.C7	AUGUSTUS	stop_codon	505671	505673	.	-	0	transcript_id "Ledus.C7G003500.t1"; gene_id "Ledus.C7G003500"
Ledus.C7	AUGUSTUS	CDS	505674	506220	0.99	-	1	transcript_id "Ledus.C7G003500.t1"; gene_id "Ledus.C7G003500"
Ledus.C7	AUGUSTUS	exon	505674	506220	.	-	.	transcript_id "Ledus.C7G003500.t1"; gene_id "Ledus.C7G003500"
Ledus.C7	AUGUSTUS	intron	506221	506309	.	-	.	transcript_id "Ledus.C7G003500.t1"; gene_id "Ledus.C7G003500"
Ledus.C7	AUGUSTUS	CDS	506310	506560	0.53	-	0	transcript_id "Ledus.C7G003500.t1"; gene_id "Ledus.C7G003500"
Ledus.C7	AUGUSTUS	exon	506310	506560	.	-	.	transcript_id "Ledus.C7G003500.t1"; gene_id "Ledus.C7G003500"
Ledus.C7	AUGUSTUS	start_codon	506558	506560	.	-	0	transcript_id "Ledus.C7G003500.t1"; gene_id "Ledus.C7G003500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6417.t1 is derived from g3860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31152175	31154668	.	-	.	Ledus.S1G383800
Ledus.S1	AUGUSTUS	transcript	31152175	31154668	.	-	.	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	stop_codon	31152172	31152174	.	-	0	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	CDS	31152175	31152256	0.75	-	1	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	exon	31152175	31152256	.	-	.	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	intron	31152257	31152472	.	-	.	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	CDS	31152473	31152517	0.98	-	1	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	exon	31152473	31152517	.	-	.	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	intron	31152518	31152623	.	-	.	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	CDS	31152624	31154380	0.94	-	0	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	exon	31152624	31154380	.	-	.	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	intron	31154381	31154494	.	-	.	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	CDS	31154495	31154668	0.85	-	0	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	exon	31154495	31154668	.	-	.	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
Ledus.S1	AUGUSTUS	start_codon	31154666	31154668	.	-	0	transcript_id "Ledus.S1G383800.t1"; gene_id "Ledus.S1G383800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7676.t1 is derived from g12347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5132936	5133726	.	-	.	Ledus.S5G045400
Ledus.S5	AUGUSTUS	transcript	5132936	5133726	.	-	.	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	stop_codon	5132933	5132935	.	-	0	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	CDS	5132936	5133000	0.57	-	2	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	exon	5132936	5133000	.	-	.	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	intron	5133001	5133327	.	-	.	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	CDS	5133328	5133332	0.56	-	1	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	exon	5133328	5133332	.	-	.	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	intron	5133333	5133399	.	-	.	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	CDS	5133400	5133441	0.48	-	1	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	exon	5133400	5133441	.	-	.	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	intron	5133442	5133592	.	-	.	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	CDS	5133593	5133726	0.22	-	0	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	exon	5133593	5133726	.	-	.	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
Ledus.S5	AUGUSTUS	start_codon	5133724	5133726	.	-	0	transcript_id "Ledus.S5G045400.t1"; gene_id "Ledus.S5G045400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6129.t1 is derived from g3572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29066579	29084705	.	-	.	Ledus.S1G355000
Ledus.S1	AUGUSTUS	transcript	29066579	29084705	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	stop_codon	29066576	29066578	.	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29066579	29067262	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29066579	29067262	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29067263	29067344	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29067345	29067533	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29067345	29067533	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29067534	29067625	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29067626	29067931	0.62	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29067626	29067931	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29067932	29068033	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29068034	29068273	0.62	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29068034	29068273	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29068274	29068356	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29068357	29068641	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29068357	29068641	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29068642	29068732	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29068733	29069065	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29068733	29069065	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29069066	29069155	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29069156	29069483	1	-	1	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29069156	29069483	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29069484	29069570	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29069571	29069809	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29069571	29069809	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29069810	29069896	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29069897	29070076	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29069897	29070076	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29070077	29070181	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29070182	29070454	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29070182	29070454	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29070455	29070545	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29070546	29070938	0.47	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29070546	29070938	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29070939	29071032	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29071033	29071221	0.48	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29071033	29071221	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29071222	29071311	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29071312	29071653	0.64	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29071312	29071653	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29071654	29071768	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29071769	29071903	0.96	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29071769	29071903	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29071904	29072022	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29072023	29072268	0.98	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29072023	29072268	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29072269	29072364	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29072365	29072577	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29072365	29072577	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29072578	29072721	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29072722	29073006	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29072722	29073006	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29073007	29073098	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29073099	29073212	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29073099	29073212	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29073213	29073307	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29073308	29073605	0.99	-	1	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29073308	29073605	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29073606	29073721	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29073722	29074122	0.93	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29073722	29074122	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29074123	29074235	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29074236	29074449	0.93	-	1	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29074236	29074449	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29074450	29074584	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29074585	29074751	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29074585	29074751	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29074752	29074853	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29074854	29074960	1	-	2	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29074854	29074960	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29074961	29075054	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29075055	29075931	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29075055	29075931	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29075932	29076041	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29076042	29076356	0.99	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29076042	29076356	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29076357	29076444	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29076445	29076751	0.97	-	1	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29076445	29076751	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29076752	29077040	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29077041	29077342	0.84	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29077041	29077342	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29077343	29077441	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29077442	29077614	1	-	2	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29077442	29077614	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29077615	29077777	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29077778	29077956	0.99	-	1	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29077778	29077956	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29077957	29078116	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29078117	29078259	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29078117	29078259	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29078260	29078351	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29078352	29078450	0.92	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29078352	29078450	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29078451	29078614	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29078615	29078651	0.85	-	1	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29078615	29078651	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29078652	29078784	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29078785	29078825	0.84	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29078785	29078825	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29078826	29078909	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29078910	29079138	1	-	1	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29078910	29079138	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29079139	29079267	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29079268	29079551	0.53	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29079268	29079551	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29079552	29079662	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29079663	29079917	0.88	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29079663	29079917	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29079918	29080030	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29080031	29080195	1	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29080031	29080195	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29080196	29080285	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29080286	29080552	0.63	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29080286	29080552	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29080553	29080667	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29080668	29080865	0.86	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29080668	29080865	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29080866	29081000	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29081001	29081135	0.77	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29081001	29081135	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29081136	29081349	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29081350	29081512	0.32	-	1	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29081350	29081512	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29081513	29081706	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29081707	29081909	0.98	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29081707	29081909	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29081910	29081999	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29082000	29082161	0.97	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29082000	29082161	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29082162	29082275	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29082276	29082843	0.53	-	1	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29082276	29082843	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29082844	29082964	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29082965	29083219	0.52	-	1	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29082965	29083219	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29083220	29083331	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29083332	29083606	0.72	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29083332	29083606	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29083607	29083688	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29083689	29083782	1	-	1	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29083689	29083782	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	intron	29083783	29083872	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	CDS	29083873	29084705	0.55	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	exon	29083873	29084705	.	-	.	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
Ledus.S1	AUGUSTUS	start_codon	29084703	29084705	.	-	0	transcript_id "Ledus.S1G355000.t1"; gene_id "Ledus.S1G355000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg519.t1 is derived from g7380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3022706	3023248	.	+	.	Ledus.S2G040100
Ledus.S2	AUGUSTUS	transcript	3022706	3023248	.	+	.	transcript_id "Ledus.S2G040100.t1"; gene_id "Ledus.S2G040100"
Ledus.S2	AUGUSTUS	start_codon	3022706	3022708	.	+	0	transcript_id "Ledus.S2G040100.t1"; gene_id "Ledus.S2G040100"
Ledus.S2	AUGUSTUS	CDS	3022706	3023248	0.99	+	0	transcript_id "Ledus.S2G040100.t1"; gene_id "Ledus.S2G040100"
Ledus.S2	AUGUSTUS	exon	3022706	3023248	.	+	.	transcript_id "Ledus.S2G040100.t1"; gene_id "Ledus.S2G040100"
Ledus.S2	AUGUSTUS	stop_codon	3023249	3023251	.	+	0	transcript_id "Ledus.S2G040100.t1"; gene_id "Ledus.S2G040100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10041.t1 is derived from g11071.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12138513	12139863	.	-	.	Ledus.S3G151800
Ledus.S3	AUGUSTUS	transcript	12138513	12139863	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	stop_codon	12138510	12138512	.	-	0	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	CDS	12138513	12138660	1	-	1	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	exon	12138513	12138660	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	intron	12138661	12138744	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	CDS	12138745	12138860	1	-	0	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	exon	12138745	12138860	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	intron	12138861	12138957	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	CDS	12138958	12139061	1	-	2	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	exon	12138958	12139061	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	intron	12139062	12139198	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	CDS	12139199	12139213	0.4	-	2	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	exon	12139199	12139213	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	intron	12139214	12139303	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	CDS	12139304	12139552	0.6	-	2	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	exon	12139304	12139552	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	intron	12139553	12139633	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	CDS	12139634	12139684	1	-	2	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	exon	12139634	12139684	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	intron	12139685	12139805	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	CDS	12139806	12139863	0.72	-	0	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	exon	12139806	12139863	.	-	.	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
Ledus.S3	AUGUSTUS	start_codon	12139861	12139863	.	-	0	transcript_id "Ledus.S3G151800.t1"; gene_id "Ledus.S3G151800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3589.t1 is derived from g1025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9869456	9869869	.	-	.	Ledus.S1G101000
Ledus.S1	AUGUSTUS	transcript	9869456	9869869	.	-	.	transcript_id "Ledus.S1G101000.t1"; gene_id "Ledus.S1G101000"
Ledus.S1	AUGUSTUS	stop_codon	9869453	9869455	.	-	0	transcript_id "Ledus.S1G101000.t1"; gene_id "Ledus.S1G101000"
Ledus.S1	AUGUSTUS	CDS	9869456	9869869	0.96	-	0	transcript_id "Ledus.S1G101000.t1"; gene_id "Ledus.S1G101000"
Ledus.S1	AUGUSTUS	exon	9869456	9869869	.	-	.	transcript_id "Ledus.S1G101000.t1"; gene_id "Ledus.S1G101000"
Ledus.S1	AUGUSTUS	start_codon	9869867	9869869	.	-	0	transcript_id "Ledus.S1G101000.t1"; gene_id "Ledus.S1G101000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1227.t1 is derived from g8088.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8739955	8741991	.	-	.	Ledus.S2G110900
Ledus.S2	AUGUSTUS	transcript	8739955	8741991	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	stop_codon	8739952	8739954	.	-	0	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8739955	8740239	1	-	0	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8739955	8740239	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	intron	8740240	8740308	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8740309	8740377	1	-	0	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8740309	8740377	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	intron	8740378	8740449	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8740450	8740515	1	-	0	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8740450	8740515	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	intron	8740516	8740599	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8740600	8740665	0.98	-	0	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8740600	8740665	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	intron	8740666	8740780	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8740781	8741113	0.95	-	0	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8740781	8741113	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	intron	8741114	8741200	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8741201	8741451	1	-	2	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8741201	8741451	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	intron	8741452	8741537	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8741538	8741991	0.97	-	0	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8741538	8741991	.	-	.	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	start_codon	8741989	8741991	.	-	0	transcript_id "Ledus.S2G110900.t1"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	transcript	8739955	8741991	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	stop_codon	8739952	8739954	.	-	0	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8739955	8740239	1	-	0	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8739955	8740239	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	intron	8740240	8740308	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8740309	8740377	1	-	0	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8740309	8740377	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	intron	8740378	8740449	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8740450	8740515	1	-	0	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8740450	8740515	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	intron	8740516	8740599	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8740600	8740665	1	-	0	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8740600	8740665	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	intron	8740666	8740780	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8740781	8741110	0.95	-	0	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8740781	8741110	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	intron	8741111	8741200	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8741201	8741451	0.98	-	2	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8741201	8741451	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	intron	8741452	8741537	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	CDS	8741538	8741991	0.88	-	0	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	exon	8741538	8741991	.	-	.	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
Ledus.S2	AUGUSTUS	start_codon	8741989	8741991	.	-	0	transcript_id "Ledus.S2G110900.t2"; gene_id "Ledus.S2G110900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11712.t1 is derived from g5331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6176388	6180281	.	-	.	Ledus.S4G086800
Ledus.S4	AUGUSTUS	transcript	6176388	6180281	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	stop_codon	6176385	6176387	.	-	0	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6176388	6176489	0.66	-	0	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6176388	6176489	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	intron	6176490	6176574	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6176575	6177360	0.7	-	0	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6176575	6177360	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	intron	6177361	6177462	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6177463	6177518	0.75	-	2	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6177463	6177518	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	intron	6177519	6177616	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6177617	6177699	0.78	-	1	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6177617	6177699	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	intron	6177700	6177812	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6177813	6178061	0.98	-	1	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6177813	6178061	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	intron	6178062	6178162	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6178163	6178299	1	-	0	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6178163	6178299	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	intron	6178300	6178400	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6178401	6178463	0.98	-	0	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6178401	6178463	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	intron	6178464	6178658	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6178659	6178731	0.93	-	1	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6178659	6178731	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	intron	6178732	6178866	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6178867	6178982	0.83	-	0	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6178867	6178982	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	intron	6178983	6179125	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6179126	6179185	0.98	-	0	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6179126	6179185	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	intron	6179186	6179279	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6179280	6179447	0.54	-	0	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6179280	6179447	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	intron	6179448	6179542	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6179543	6179579	0.56	-	1	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6179543	6179579	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	intron	6179580	6179763	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	CDS	6179764	6180281	0.83	-	0	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	exon	6179764	6180281	.	-	.	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
Ledus.S4	AUGUSTUS	start_codon	6180279	6180281	.	-	0	transcript_id "Ledus.S4G086800.t1"; gene_id "Ledus.S4G086800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11168.t1 is derived from g4786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2342573	2343823	.	+	.	Ledus.S4G032400
Ledus.S4	AUGUSTUS	transcript	2342573	2343823	.	+	.	transcript_id "Ledus.S4G032400.t1"; gene_id "Ledus.S4G032400"
Ledus.S4	AUGUSTUS	start_codon	2342573	2342575	.	+	0	transcript_id "Ledus.S4G032400.t1"; gene_id "Ledus.S4G032400"
Ledus.S4	AUGUSTUS	CDS	2342573	2343823	0.95	+	0	transcript_id "Ledus.S4G032400.t1"; gene_id "Ledus.S4G032400"
Ledus.S4	AUGUSTUS	exon	2342573	2343823	.	+	.	transcript_id "Ledus.S4G032400.t1"; gene_id "Ledus.S4G032400"
Ledus.S4	AUGUSTUS	stop_codon	2343824	2343826	.	+	0	transcript_id "Ledus.S4G032400.t1"; gene_id "Ledus.S4G032400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5449.t1 is derived from g2888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24358619	24360445	.	+	.	Ledus.S1G287000
Ledus.S1	AUGUSTUS	transcript	24358619	24360445	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	start_codon	24358619	24358621	.	+	0	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	CDS	24358619	24359326	0.68	+	0	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	exon	24358619	24359326	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	intron	24359327	24359412	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	CDS	24359413	24359481	1	+	0	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	exon	24359413	24359481	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	intron	24359482	24359572	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	CDS	24359573	24359641	1	+	0	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	exon	24359573	24359641	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	intron	24359642	24359727	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	CDS	24359728	24359814	1	+	0	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	exon	24359728	24359814	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	intron	24359815	24359903	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	CDS	24359904	24359971	1	+	0	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	exon	24359904	24359971	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	intron	24359972	24360089	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	CDS	24360090	24360183	0.86	+	1	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	exon	24360090	24360183	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	intron	24360184	24360391	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	CDS	24360392	24360445	0.69	+	0	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	exon	24360392	24360445	.	+	.	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
Ledus.S1	AUGUSTUS	stop_codon	24360446	24360448	.	+	0	transcript_id "Ledus.S1G287000.t1"; gene_id "Ledus.S1G287000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2431.t1 is derived from g9294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18075327	18076023	.	-	.	Ledus.S2G231300
Ledus.S2	AUGUSTUS	transcript	18075327	18076023	.	-	.	transcript_id "Ledus.S2G231300.t1"; gene_id "Ledus.S2G231300"
Ledus.S2	AUGUSTUS	stop_codon	18075324	18075326	.	-	0	transcript_id "Ledus.S2G231300.t1"; gene_id "Ledus.S2G231300"
Ledus.S2	AUGUSTUS	CDS	18075327	18075716	0.53	-	0	transcript_id "Ledus.S2G231300.t1"; gene_id "Ledus.S2G231300"
Ledus.S2	AUGUSTUS	exon	18075327	18075716	.	-	.	transcript_id "Ledus.S2G231300.t1"; gene_id "Ledus.S2G231300"
Ledus.S2	AUGUSTUS	intron	18075717	18075882	.	-	.	transcript_id "Ledus.S2G231300.t1"; gene_id "Ledus.S2G231300"
Ledus.S2	AUGUSTUS	CDS	18075883	18076023	0.13	-	0	transcript_id "Ledus.S2G231300.t1"; gene_id "Ledus.S2G231300"
Ledus.S2	AUGUSTUS	exon	18075883	18076023	.	-	.	transcript_id "Ledus.S2G231300.t1"; gene_id "Ledus.S2G231300"
Ledus.S2	AUGUSTUS	start_codon	18076021	18076023	.	-	0	transcript_id "Ledus.S2G231300.t1"; gene_id "Ledus.S2G231300"
# This transcript jg8787.t2 is derived from g9817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8788.t1 is derived from g9818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1976974	1979050	.	+	.	Ledus.S3G026500
Ledus.S3	AUGUSTUS	transcript	1976974	1979050	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	start_codon	1976974	1976976	.	+	0	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1976974	1977009	0.83	+	0	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1976974	1977009	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1977010	1977615	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1977616	1977671	1	+	0	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1977616	1977671	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1977672	1977777	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1977778	1977883	1	+	1	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1977778	1977883	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1977884	1977982	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1977983	1978141	1	+	0	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1977983	1978141	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1978142	1978220	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1978221	1978408	0.89	+	0	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1978221	1978408	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1978409	1978512	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1978513	1978575	1	+	1	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1978513	1978575	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1978576	1978661	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1978662	1978821	1	+	1	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1978662	1978821	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1978822	1978897	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1978898	1978966	0.91	+	0	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1978898	1978966	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1978967	1979029	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1979030	1979050	0.63	+	0	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1979030	1979050	.	+	.	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	stop_codon	1979051	1979053	.	+	0	transcript_id "Ledus.S3G026500.t1"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	transcript	1977228	1979050	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	start_codon	1977228	1977230	.	+	0	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1977228	1977389	0.2	+	0	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1977228	1977389	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1977390	1977615	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1977616	1977671	1	+	0	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1977616	1977671	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1977672	1977777	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1977778	1977883	0.99	+	1	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1977778	1977883	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1977884	1977982	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1977983	1978141	1	+	0	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1977983	1978141	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1978142	1978220	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1978221	1978408	0.95	+	0	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1978221	1978408	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1978409	1978512	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1978513	1978575	1	+	1	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1978513	1978575	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1978576	1978661	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1978662	1978821	1	+	1	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1978662	1978821	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1978822	1978897	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1978898	1978966	0.92	+	0	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1978898	1978966	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	intron	1978967	1979029	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	CDS	1979030	1979050	0.5	+	0	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	exon	1979030	1979050	.	+	.	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
Ledus.S3	AUGUSTUS	stop_codon	1979051	1979053	.	+	0	transcript_id "Ledus.S3G026500.t2"; gene_id "Ledus.S3G026500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1749.t1 is derived from g8611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12313828	12315713	.	-	.	Ledus.S2G163100
Ledus.S2	AUGUSTUS	transcript	12313828	12315713	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	stop_codon	12313825	12313827	.	-	0	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	CDS	12313828	12313944	0.95	-	0	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	exon	12313828	12313944	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	intron	12313945	12314018	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	CDS	12314019	12314105	1	-	0	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	exon	12314019	12314105	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	intron	12314106	12314351	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	CDS	12314352	12314437	1	-	2	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	exon	12314352	12314437	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	intron	12314438	12314665	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	CDS	12314666	12314756	1	-	0	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	exon	12314666	12314756	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	intron	12314757	12314893	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	CDS	12314894	12314979	1	-	2	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	exon	12314894	12314979	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	intron	12314980	12315123	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	CDS	12315124	12315232	1	-	0	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	exon	12315124	12315232	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	intron	12315233	12315328	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	CDS	12315329	12315375	1	-	2	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	exon	12315329	12315375	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	intron	12315376	12315473	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	CDS	12315474	12315543	1	-	0	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	exon	12315474	12315543	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	intron	12315544	12315608	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	CDS	12315609	12315713	0.92	-	0	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	exon	12315609	12315713	.	-	.	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
Ledus.S2	AUGUSTUS	start_codon	12315711	12315713	.	-	0	transcript_id "Ledus.S2G163100.t1"; gene_id "Ledus.S2G163100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9091.t1 is derived from g10121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4471127	4471339	.	+	.	Ledus.S3G056800
Ledus.S3	AUGUSTUS	transcript	4471127	4471339	.	+	.	transcript_id "Ledus.S3G056800.t1"; gene_id "Ledus.S3G056800"
Ledus.S3	AUGUSTUS	start_codon	4471127	4471129	.	+	0	transcript_id "Ledus.S3G056800.t1"; gene_id "Ledus.S3G056800"
Ledus.S3	AUGUSTUS	CDS	4471127	4471339	0.55	+	0	transcript_id "Ledus.S3G056800.t1"; gene_id "Ledus.S3G056800"
Ledus.S3	AUGUSTUS	exon	4471127	4471339	.	+	.	transcript_id "Ledus.S3G056800.t1"; gene_id "Ledus.S3G056800"
Ledus.S3	AUGUSTUS	stop_codon	4471340	4471342	.	+	0	transcript_id "Ledus.S3G056800.t1"; gene_id "Ledus.S3G056800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6200.t1 is derived from g3643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29600857	29602225	.	+	.	Ledus.S1G362100
Ledus.S1	AUGUSTUS	transcript	29600857	29602225	.	+	.	transcript_id "Ledus.S1G362100.t1"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	start_codon	29600857	29600859	.	+	0	transcript_id "Ledus.S1G362100.t1"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	CDS	29600857	29601415	0.28	+	0	transcript_id "Ledus.S1G362100.t1"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	exon	29600857	29601415	.	+	.	transcript_id "Ledus.S1G362100.t1"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	intron	29601416	29601812	.	+	.	transcript_id "Ledus.S1G362100.t1"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	CDS	29601813	29602225	0.99	+	2	transcript_id "Ledus.S1G362100.t1"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	exon	29601813	29602225	.	+	.	transcript_id "Ledus.S1G362100.t1"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	stop_codon	29602226	29602228	.	+	0	transcript_id "Ledus.S1G362100.t1"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	transcript	29600857	29602225	.	+	.	transcript_id "Ledus.S1G362100.t2"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	start_codon	29600857	29600859	.	+	0	transcript_id "Ledus.S1G362100.t2"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	CDS	29600857	29601415	0.22	+	0	transcript_id "Ledus.S1G362100.t2"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	exon	29600857	29601415	.	+	.	transcript_id "Ledus.S1G362100.t2"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	intron	29601416	29601899	.	+	.	transcript_id "Ledus.S1G362100.t2"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	CDS	29601900	29602225	0.88	+	2	transcript_id "Ledus.S1G362100.t2"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	exon	29601900	29602225	.	+	.	transcript_id "Ledus.S1G362100.t2"; gene_id "Ledus.S1G362100"
Ledus.S1	AUGUSTUS	stop_codon	29602226	29602228	.	+	0	transcript_id "Ledus.S1G362100.t2"; gene_id "Ledus.S1G362100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2004.t1 is derived from g8867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14139038	14140141	.	-	.	Ledus.S2G188600
Ledus.S2	AUGUSTUS	transcript	14139038	14140141	.	-	.	transcript_id "Ledus.S2G188600.t1"; gene_id "Ledus.S2G188600"
Ledus.S2	AUGUSTUS	stop_codon	14139035	14139037	.	-	0	transcript_id "Ledus.S2G188600.t1"; gene_id "Ledus.S2G188600"
Ledus.S2	AUGUSTUS	CDS	14139038	14140141	0.79	-	0	transcript_id "Ledus.S2G188600.t1"; gene_id "Ledus.S2G188600"
Ledus.S2	AUGUSTUS	exon	14139038	14140141	.	-	.	transcript_id "Ledus.S2G188600.t1"; gene_id "Ledus.S2G188600"
Ledus.S2	AUGUSTUS	start_codon	14140139	14140141	.	-	0	transcript_id "Ledus.S2G188600.t1"; gene_id "Ledus.S2G188600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5262.t1 is derived from g2701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22771950	22777560	.	-	.	Ledus.S1G268300
Ledus.S1	AUGUSTUS	transcript	22771950	22777560	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	stop_codon	22771947	22771949	.	-	0	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	CDS	22771950	22772015	0.54	-	0	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	exon	22771950	22772015	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	intron	22772016	22772298	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	CDS	22772299	22773582	0.32	-	0	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	exon	22772299	22773582	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	intron	22773583	22773663	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	CDS	22773664	22774134	0.43	-	0	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	exon	22773664	22774134	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	intron	22774135	22774469	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	CDS	22774470	22774653	0.98	-	1	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	exon	22774470	22774653	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	intron	22774654	22774730	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	CDS	22774731	22776856	0.45	-	0	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	exon	22774731	22776856	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	intron	22776857	22777038	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	CDS	22777039	22777094	1	-	2	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	exon	22777039	22777094	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	intron	22777095	22777184	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	CDS	22777185	22777560	0.99	-	0	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	exon	22777185	22777560	.	-	.	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	start_codon	22777558	22777560	.	-	0	transcript_id "Ledus.S1G268300.t1"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	transcript	22771950	22775593	.	-	.	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	stop_codon	22771947	22771949	.	-	0	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	CDS	22771950	22772015	0.64	-	0	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	exon	22771950	22772015	.	-	.	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	intron	22772016	22772298	.	-	.	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	CDS	22772299	22773582	0.37	-	0	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	exon	22772299	22773582	.	-	.	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	intron	22773583	22773663	.	-	.	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	CDS	22773664	22774134	0.44	-	0	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	exon	22773664	22774134	.	-	.	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	intron	22774135	22774469	.	-	.	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	CDS	22774470	22774653	0.98	-	1	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	exon	22774470	22774653	.	-	.	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	intron	22774654	22774730	.	-	.	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	CDS	22774731	22775593	0.27	-	0	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	exon	22774731	22775593	.	-	.	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
Ledus.S1	AUGUSTUS	start_codon	22775591	22775593	.	-	0	transcript_id "Ledus.S1G268300.t2"; gene_id "Ledus.S1G268300"
# This transcript jg4095.t2 is derived from g1531.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4096.t1 is derived from g1532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14670933	14673361	.	+	.	Ledus.S1G151700
Ledus.S1	AUGUSTUS	transcript	14670933	14673361	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	start_codon	14670933	14670935	.	+	0	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	CDS	14670933	14671499	0.91	+	0	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	exon	14670933	14671499	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	intron	14671500	14671580	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	CDS	14671581	14671719	0.85	+	0	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	exon	14671581	14671719	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	intron	14671720	14671833	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	CDS	14671834	14671942	0.93	+	2	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	exon	14671834	14671942	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	intron	14671943	14672035	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	CDS	14672036	14672110	1	+	1	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	exon	14672036	14672110	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	intron	14672111	14672292	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	CDS	14672293	14672348	1	+	1	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	exon	14672293	14672348	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	intron	14672349	14672481	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	CDS	14672482	14672539	1	+	2	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	exon	14672482	14672539	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	intron	14672540	14672625	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	CDS	14672626	14672944	0.74	+	1	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	exon	14672626	14672944	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	intron	14672945	14673050	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	CDS	14673051	14673085	0.82	+	0	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	exon	14673051	14673085	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	intron	14673086	14673345	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	CDS	14673346	14673361	0.83	+	1	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	exon	14673346	14673361	.	+	.	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
Ledus.S1	AUGUSTUS	stop_codon	14673362	14673364	.	+	0	transcript_id "Ledus.S1G151700.t1"; gene_id "Ledus.S1G151700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8389.t1 is derived from g13061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11444480	11446125	.	+	.	Ledus.S5G116700
Ledus.S5	AUGUSTUS	transcript	11444480	11446125	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	start_codon	11444480	11444482	.	+	0	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	CDS	11444480	11444879	0.69	+	0	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	exon	11444480	11444879	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	intron	11444880	11444952	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	CDS	11444953	11445074	1	+	2	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	exon	11444953	11445074	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	intron	11445075	11445174	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	CDS	11445175	11445279	1	+	0	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	exon	11445175	11445279	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	intron	11445280	11445365	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	CDS	11445366	11445458	1	+	0	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	exon	11445366	11445458	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	intron	11445459	11445540	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	CDS	11445541	11445615	1	+	0	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	exon	11445541	11445615	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	intron	11445616	11445767	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	CDS	11445768	11445830	1	+	0	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	exon	11445768	11445830	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	intron	11445831	11445914	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	CDS	11445915	11446024	1	+	0	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	exon	11445915	11446024	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	intron	11446025	11446100	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	CDS	11446101	11446125	1	+	1	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	exon	11446101	11446125	.	+	.	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
Ledus.S5	AUGUSTUS	stop_codon	11446126	11446128	.	+	0	transcript_id "Ledus.S5G116700.t1"; gene_id "Ledus.S5G116700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9171.t1 is derived from g10201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5224988	5225368	.	-	.	Ledus.S3G064800
Ledus.S3	AUGUSTUS	transcript	5224988	5225368	.	-	.	transcript_id "Ledus.S3G064800.t1"; gene_id "Ledus.S3G064800"
Ledus.S3	AUGUSTUS	stop_codon	5224985	5224987	.	-	0	transcript_id "Ledus.S3G064800.t1"; gene_id "Ledus.S3G064800"
Ledus.S3	AUGUSTUS	CDS	5224988	5225368	0.45	-	0	transcript_id "Ledus.S3G064800.t1"; gene_id "Ledus.S3G064800"
Ledus.S3	AUGUSTUS	exon	5224988	5225368	.	-	.	transcript_id "Ledus.S3G064800.t1"; gene_id "Ledus.S3G064800"
Ledus.S3	AUGUSTUS	start_codon	5225366	5225368	.	-	0	transcript_id "Ledus.S3G064800.t1"; gene_id "Ledus.S3G064800"
# This transcript jg9996.t2 is derived from g11026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9997.t1 is derived from g11027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11774369	11776987	.	+	.	Ledus.S3G147400
Ledus.S3	AUGUSTUS	transcript	11774369	11776987	.	+	.	transcript_id "Ledus.S3G147400.t1"; gene_id "Ledus.S3G147400"
Ledus.S3	AUGUSTUS	start_codon	11774369	11774371	.	+	0	transcript_id "Ledus.S3G147400.t1"; gene_id "Ledus.S3G147400"
Ledus.S3	AUGUSTUS	CDS	11774369	11776987	1	+	0	transcript_id "Ledus.S3G147400.t1"; gene_id "Ledus.S3G147400"
Ledus.S3	AUGUSTUS	exon	11774369	11776987	.	+	.	transcript_id "Ledus.S3G147400.t1"; gene_id "Ledus.S3G147400"
Ledus.S3	AUGUSTUS	stop_codon	11776988	11776990	.	+	0	transcript_id "Ledus.S3G147400.t1"; gene_id "Ledus.S3G147400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7076.t1 is derived from g6607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1276554	1280971	.	-	.	Ledus.C7G013700
Ledus.C7	AUGUSTUS	transcript	1276554	1280971	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	stop_codon	1276551	1276553	.	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1276554	1276637	0.57	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1276554	1276637	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1276638	1276745	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1276746	1276889	0.38	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1276746	1276889	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1276890	1277011	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1277012	1277122	0.95	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1277012	1277122	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1277123	1277217	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1277218	1277298	1	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1277218	1277298	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1277299	1277388	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1277389	1277494	1	-	1	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1277389	1277494	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1277495	1277583	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1277584	1277711	0.98	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1277584	1277711	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1277712	1277812	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1277813	1278015	0.92	-	2	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1277813	1278015	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1278016	1278152	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1278153	1278327	1	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1278153	1278327	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1278328	1278405	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1278406	1278633	0.71	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1278406	1278633	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1278634	1278760	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1278761	1278985	0.81	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1278761	1278985	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1278986	1279322	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1279323	1279436	1	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1279323	1279436	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1279437	1279501	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1279502	1279601	0.68	-	1	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1279502	1279601	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1279602	1279844	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1279845	1279881	0.7	-	2	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1279845	1279881	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1279882	1280036	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1280037	1280215	0.98	-	1	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1280037	1280215	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1280216	1280313	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1280314	1280459	1	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1280314	1280459	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1280460	1280552	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1280553	1280625	1	-	1	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1280553	1280625	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1280626	1280708	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1280709	1280971	0.98	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1280709	1280971	.	-	.	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	start_codon	1280969	1280971	.	-	0	transcript_id "Ledus.C7G013700.t1"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	transcript	1276554	1280971	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	stop_codon	1276551	1276553	.	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1276554	1276637	0.6	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1276554	1276637	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1276638	1276745	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1276746	1276889	0.37	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1276746	1276889	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1276890	1277011	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1277012	1277122	0.94	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1277012	1277122	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1277123	1277217	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1277218	1277298	1	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1277218	1277298	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1277299	1277388	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1277389	1277494	1	-	1	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1277389	1277494	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1277495	1277583	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1277584	1277711	0.94	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1277584	1277711	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1277712	1277812	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1277813	1278002	0.53	-	1	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1277813	1278002	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1278003	1278152	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1278153	1278169	0.56	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1278153	1278169	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1278170	1278261	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1278262	1278327	0.57	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1278262	1278327	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1278328	1278405	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1278406	1278633	0.74	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1278406	1278633	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1278634	1278760	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1278761	1278985	0.84	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1278761	1278985	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1278986	1279322	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1279323	1279436	1	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1279323	1279436	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1279437	1279501	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1279502	1279601	0.51	-	1	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1279502	1279601	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1279602	1279844	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1279845	1279881	0.55	-	2	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1279845	1279881	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1279882	1280036	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1280037	1280215	0.99	-	1	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1280037	1280215	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1280216	1280313	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1280314	1280459	1	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1280314	1280459	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1280460	1280552	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1280553	1280625	1	-	1	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1280553	1280625	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	intron	1280626	1280708	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	CDS	1280709	1280971	0.99	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	exon	1280709	1280971	.	-	.	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
Ledus.C7	AUGUSTUS	start_codon	1280969	1280971	.	-	0	transcript_id "Ledus.C7G013700.t2"; gene_id "Ledus.C7G013700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8996.t1 is derived from g10026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3742842	3743928	.	+	.	Ledus.S3G047300
Ledus.S3	AUGUSTUS	transcript	3742842	3743928	.	+	.	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	start_codon	3742842	3742844	.	+	0	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	CDS	3742842	3742962	0.95	+	0	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	exon	3742842	3742962	.	+	.	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	intron	3742963	3743106	.	+	.	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	CDS	3743107	3743147	0.94	+	2	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	exon	3743107	3743147	.	+	.	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	intron	3743148	3743316	.	+	.	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	CDS	3743317	3743369	0.79	+	0	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	exon	3743317	3743369	.	+	.	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	intron	3743370	3743506	.	+	.	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	CDS	3743507	3743545	1	+	1	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	exon	3743507	3743545	.	+	.	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	intron	3743546	3743703	.	+	.	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	CDS	3743704	3743773	0.95	+	1	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	exon	3743704	3743773	.	+	.	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	intron	3743774	3743880	.	+	.	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	CDS	3743881	3743928	0.91	+	0	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	exon	3743881	3743928	.	+	.	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
Ledus.S3	AUGUSTUS	stop_codon	3743929	3743931	.	+	0	transcript_id "Ledus.S3G047300.t1"; gene_id "Ledus.S3G047300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11627.t1 is derived from g5245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5632790	5633350	.	-	.	Ledus.S4G078300
Ledus.S4	AUGUSTUS	transcript	5632790	5633350	.	-	.	transcript_id "Ledus.S4G078300.t1"; gene_id "Ledus.S4G078300"
Ledus.S4	AUGUSTUS	stop_codon	5632787	5632789	.	-	0	transcript_id "Ledus.S4G078300.t1"; gene_id "Ledus.S4G078300"
Ledus.S4	AUGUSTUS	CDS	5632790	5633350	0.35	-	0	transcript_id "Ledus.S4G078300.t1"; gene_id "Ledus.S4G078300"
Ledus.S4	AUGUSTUS	exon	5632790	5633350	.	-	.	transcript_id "Ledus.S4G078300.t1"; gene_id "Ledus.S4G078300"
Ledus.S4	AUGUSTUS	start_codon	5633348	5633350	.	-	0	transcript_id "Ledus.S4G078300.t1"; gene_id "Ledus.S4G078300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8136.t1 is derived from g12807.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9317519	9318601	.	+	.	Ledus.S5G091400
Ledus.S5	AUGUSTUS	transcript	9317519	9318601	.	+	.	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	start_codon	9317519	9317521	.	+	0	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	CDS	9317519	9317531	0.99	+	0	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	exon	9317519	9317531	.	+	.	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	intron	9317532	9317820	.	+	.	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	CDS	9317821	9317828	0.99	+	2	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	exon	9317821	9317828	.	+	.	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	intron	9317829	9318074	.	+	.	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	CDS	9318075	9318128	0.99	+	0	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	exon	9318075	9318128	.	+	.	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	intron	9318129	9318391	.	+	.	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	CDS	9318392	9318601	0.94	+	0	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	exon	9318392	9318601	.	+	.	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	stop_codon	9318602	9318604	.	+	0	transcript_id "Ledus.S5G091400.t1"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	transcript	9317636	9318601	.	+	.	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	start_codon	9317636	9317638	.	+	0	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	CDS	9317636	9317732	0.24	+	0	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	exon	9317636	9317732	.	+	.	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	intron	9317733	9317820	.	+	.	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	CDS	9317821	9317828	0.25	+	2	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	exon	9317821	9317828	.	+	.	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	intron	9317829	9318074	.	+	.	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	CDS	9318075	9318128	0.61	+	0	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	exon	9318075	9318128	.	+	.	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	intron	9318129	9318391	.	+	.	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	CDS	9318392	9318601	0.61	+	0	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	exon	9318392	9318601	.	+	.	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
Ledus.S5	AUGUSTUS	stop_codon	9318602	9318604	.	+	0	transcript_id "Ledus.S5G091400.t2"; gene_id "Ledus.S5G091400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12610.t1 is derived from g6232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13223578	13224486	.	-	.	Ledus.S4G176600
Ledus.S4	AUGUSTUS	transcript	13223578	13224486	.	-	.	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	stop_codon	13223575	13223577	.	-	0	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	CDS	13223578	13223958	0.64	-	0	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	exon	13223578	13223958	.	-	.	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	intron	13223959	13224094	.	-	.	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	CDS	13224095	13224151	0.52	-	0	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	exon	13224095	13224151	.	-	.	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	intron	13224152	13224248	.	-	.	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	CDS	13224249	13224310	0.51	-	2	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	exon	13224249	13224310	.	-	.	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	intron	13224311	13224416	.	-	.	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	CDS	13224417	13224486	0.78	-	0	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	exon	13224417	13224486	.	-	.	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
Ledus.S4	AUGUSTUS	start_codon	13224484	13224486	.	-	0	transcript_id "Ledus.S4G176600.t1"; gene_id "Ledus.S4G176600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12787.t1 is derived from g6409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14472692	14476071	.	-	.	Ledus.S4G194300
Ledus.S4	AUGUSTUS	transcript	14472692	14476071	.	-	.	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	stop_codon	14472689	14472691	.	-	0	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	CDS	14472692	14474509	1	-	0	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	exon	14472692	14474509	.	-	.	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	intron	14474510	14474587	.	-	.	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	CDS	14474588	14475442	0.85	-	0	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	exon	14474588	14475442	.	-	.	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	intron	14475443	14475513	.	-	.	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	CDS	14475514	14475770	0.95	-	2	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	exon	14475514	14475770	.	-	.	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	intron	14475771	14475878	.	-	.	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	CDS	14475879	14476071	0.71	-	0	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	exon	14475879	14476071	.	-	.	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
Ledus.S4	AUGUSTUS	start_codon	14476069	14476071	.	-	0	transcript_id "Ledus.S4G194300.t1"; gene_id "Ledus.S4G194300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11240.t1 is derived from g4858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2872749	2873994	.	-	.	Ledus.S4G039600
Ledus.S4	AUGUSTUS	transcript	2872749	2873994	.	-	.	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	stop_codon	2872746	2872748	.	-	0	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	CDS	2872749	2872863	0.99	-	1	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	exon	2872749	2872863	.	-	.	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	intron	2872864	2873121	.	-	.	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	CDS	2873122	2873199	1	-	1	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	exon	2873122	2873199	.	-	.	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	intron	2873200	2873365	.	-	.	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	CDS	2873366	2873457	0.65	-	0	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	exon	2873366	2873457	.	-	.	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	intron	2873458	2873590	.	-	.	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	CDS	2873591	2873623	0.37	-	0	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	exon	2873591	2873623	.	-	.	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	intron	2873624	2873763	.	-	.	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	CDS	2873764	2873818	0.74	-	1	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	exon	2873764	2873818	.	-	.	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	intron	2873819	2873956	.	-	.	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	CDS	2873957	2873994	0.67	-	0	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	exon	2873957	2873994	.	-	.	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
Ledus.S4	AUGUSTUS	start_codon	2873992	2873994	.	-	0	transcript_id "Ledus.S4G039600.t1"; gene_id "Ledus.S4G039600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10282.t1 is derived from g11312.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14001067	14004976	.	+	.	Ledus.S3G175900
Ledus.S3	AUGUSTUS	transcript	14001067	14004976	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	start_codon	14001067	14001069	.	+	0	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14001067	14001643	0.63	+	0	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14001067	14001643	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14001644	14002045	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14002046	14002198	0.97	+	2	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14002046	14002198	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14002199	14002598	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14002599	14002697	1	+	2	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14002599	14002697	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14002698	14003055	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14003056	14003135	1	+	2	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14003056	14003135	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14003136	14003249	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14003250	14003462	0.81	+	0	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14003250	14003462	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14003463	14003563	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14003564	14003645	0.39	+	0	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14003564	14003645	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14003646	14003960	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14003961	14004031	0.33	+	2	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14003961	14004031	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14004032	14004218	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14004219	14004271	1	+	0	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14004219	14004271	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14004272	14004468	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14004469	14004510	1	+	1	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14004469	14004510	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14004511	14004625	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14004626	14004764	0.99	+	1	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14004626	14004764	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14004765	14004904	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14004905	14004976	1	+	0	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14004905	14004976	.	+	.	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	stop_codon	14004977	14004979	.	+	0	transcript_id "Ledus.S3G175900.t1"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	transcript	14001067	14004976	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	start_codon	14001067	14001069	.	+	0	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14001067	14001643	0.61	+	0	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14001067	14001643	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14001644	14002045	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14002046	14002198	1	+	2	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14002046	14002198	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14002199	14002598	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14002599	14002697	1	+	2	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14002599	14002697	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14002698	14003058	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14003059	14003135	0.73	+	2	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14003059	14003135	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14003136	14003249	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14003250	14003462	0.81	+	0	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14003250	14003462	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14003463	14003563	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14003564	14003645	0.3	+	0	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14003564	14003645	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14003646	14003960	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14003961	14004031	0.44	+	2	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14003961	14004031	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14004032	14004218	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14004219	14004271	1	+	0	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14004219	14004271	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14004272	14004468	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14004469	14004510	1	+	1	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14004469	14004510	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14004511	14004625	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14004626	14004764	0.98	+	1	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14004626	14004764	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14004765	14004904	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14004905	14004976	1	+	0	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14004905	14004976	.	+	.	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	stop_codon	14004977	14004979	.	+	0	transcript_id "Ledus.S3G175900.t2"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	transcript	14001067	14004976	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	start_codon	14001067	14001069	.	+	0	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14001067	14001643	0.64	+	0	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14001067	14001643	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14001644	14002045	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14002046	14002210	1	+	2	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14002046	14002210	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14002211	14002598	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14002599	14002697	1	+	2	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14002599	14002697	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14002698	14003058	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14003059	14003135	0.65	+	2	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14003059	14003135	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14003136	14003249	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14003250	14003462	0.82	+	0	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14003250	14003462	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14003463	14003563	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14003564	14003645	0.29	+	0	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14003564	14003645	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14003646	14003960	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14003961	14004031	0.41	+	2	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14003961	14004031	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14004032	14004218	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14004219	14004271	1	+	0	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14004219	14004271	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14004272	14004468	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14004469	14004510	1	+	1	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14004469	14004510	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14004511	14004625	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14004626	14004764	0.99	+	1	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14004626	14004764	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	intron	14004765	14004904	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	CDS	14004905	14004976	1	+	0	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	exon	14004905	14004976	.	+	.	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
Ledus.S3	AUGUSTUS	stop_codon	14004977	14004979	.	+	0	transcript_id "Ledus.S3G175900.t3"; gene_id "Ledus.S3G175900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10908.t1 is derived from g4526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	405730	406076	.	-	.	Ledus.S4G006400
Ledus.S4	AUGUSTUS	transcript	405730	406076	.	-	.	transcript_id "Ledus.S4G006400.t1"; gene_id "Ledus.S4G006400"
Ledus.S4	AUGUSTUS	stop_codon	405727	405729	.	-	0	transcript_id "Ledus.S4G006400.t1"; gene_id "Ledus.S4G006400"
Ledus.S4	AUGUSTUS	CDS	405730	405755	0.93	-	2	transcript_id "Ledus.S4G006400.t1"; gene_id "Ledus.S4G006400"
Ledus.S4	AUGUSTUS	exon	405730	405755	.	-	.	transcript_id "Ledus.S4G006400.t1"; gene_id "Ledus.S4G006400"
Ledus.S4	AUGUSTUS	intron	405756	405832	.	-	.	transcript_id "Ledus.S4G006400.t1"; gene_id "Ledus.S4G006400"
Ledus.S4	AUGUSTUS	CDS	405833	406076	0.93	-	0	transcript_id "Ledus.S4G006400.t1"; gene_id "Ledus.S4G006400"
Ledus.S4	AUGUSTUS	exon	405833	406076	.	-	.	transcript_id "Ledus.S4G006400.t1"; gene_id "Ledus.S4G006400"
Ledus.S4	AUGUSTUS	start_codon	406074	406076	.	-	0	transcript_id "Ledus.S4G006400.t1"; gene_id "Ledus.S4G006400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6768.t1 is derived from g4211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34019965	34020508	.	-	.	Ledus.S1G418900
Ledus.S1	AUGUSTUS	transcript	34019965	34020508	.	-	.	transcript_id "Ledus.S1G418900.t1"; gene_id "Ledus.S1G418900"
Ledus.S1	AUGUSTUS	stop_codon	34019962	34019964	.	-	0	transcript_id "Ledus.S1G418900.t1"; gene_id "Ledus.S1G418900"
Ledus.S1	AUGUSTUS	CDS	34019965	34020103	0.68	-	1	transcript_id "Ledus.S1G418900.t1"; gene_id "Ledus.S1G418900"
Ledus.S1	AUGUSTUS	exon	34019965	34020103	.	-	.	transcript_id "Ledus.S1G418900.t1"; gene_id "Ledus.S1G418900"
Ledus.S1	AUGUSTUS	intron	34020104	34020185	.	-	.	transcript_id "Ledus.S1G418900.t1"; gene_id "Ledus.S1G418900"
Ledus.S1	AUGUSTUS	CDS	34020186	34020243	0.49	-	2	transcript_id "Ledus.S1G418900.t1"; gene_id "Ledus.S1G418900"
Ledus.S1	AUGUSTUS	exon	34020186	34020243	.	-	.	transcript_id "Ledus.S1G418900.t1"; gene_id "Ledus.S1G418900"
Ledus.S1	AUGUSTUS	intron	34020244	34020492	.	-	.	transcript_id "Ledus.S1G418900.t1"; gene_id "Ledus.S1G418900"
Ledus.S1	AUGUSTUS	CDS	34020493	34020508	0.4	-	0	transcript_id "Ledus.S1G418900.t1"; gene_id "Ledus.S1G418900"
Ledus.S1	AUGUSTUS	exon	34020493	34020508	.	-	.	transcript_id "Ledus.S1G418900.t1"; gene_id "Ledus.S1G418900"
Ledus.S1	AUGUSTUS	start_codon	34020506	34020508	.	-	0	transcript_id "Ledus.S1G418900.t1"; gene_id "Ledus.S1G418900"
# This transcript jg1800.t2 is derived from g8663.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1801.t1 is derived from g8664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12675116	12678080	.	-	.	Ledus.S2G168300
Ledus.S2	AUGUSTUS	transcript	12675116	12678080	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	stop_codon	12675113	12675115	.	-	0	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	CDS	12675116	12675235	1	-	0	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	exon	12675116	12675235	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	intron	12675236	12675405	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	CDS	12675406	12675538	1	-	1	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	exon	12675406	12675538	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	intron	12675539	12675679	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	CDS	12675680	12675888	1	-	0	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	exon	12675680	12675888	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	intron	12675889	12675981	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	CDS	12675982	12676554	1	-	0	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	exon	12675982	12676554	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	intron	12676555	12676651	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	CDS	12676652	12676801	1	-	0	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	exon	12676652	12676801	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	intron	12676802	12676970	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	CDS	12676971	12677106	1	-	1	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	exon	12676971	12677106	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	intron	12677107	12677330	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	CDS	12677331	12677425	1	-	0	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	exon	12677331	12677425	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	intron	12677426	12677592	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	CDS	12677593	12677687	1	-	2	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	exon	12677593	12677687	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	intron	12677688	12677782	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	CDS	12677783	12677917	1	-	2	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	exon	12677783	12677917	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	intron	12677918	12678013	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	CDS	12678014	12678080	0.94	-	0	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	exon	12678014	12678080	.	-	.	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
Ledus.S2	AUGUSTUS	start_codon	12678078	12678080	.	-	0	transcript_id "Ledus.S2G168300.t1"; gene_id "Ledus.S2G168300"
# This transcript jg10993.t2 is derived from g4611.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10994.t1 is derived from g4612.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1041957	1044436	.	-	.	Ledus.S4G015000
Ledus.S4	AUGUSTUS	transcript	1041957	1044436	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	stop_codon	1041954	1041956	.	-	0	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	CDS	1041957	1042058	0.98	-	0	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	exon	1041957	1042058	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	intron	1042059	1042215	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	CDS	1042216	1042347	1	-	0	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	exon	1042216	1042347	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	intron	1042348	1042447	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	CDS	1042448	1042579	1	-	0	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	exon	1042448	1042579	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	intron	1042580	1042676	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	CDS	1042677	1042781	1	-	0	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	exon	1042677	1042781	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	intron	1042782	1042874	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	CDS	1042875	1043024	1	-	0	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	exon	1042875	1043024	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	intron	1043025	1043102	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	CDS	1043103	1043282	1	-	0	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	exon	1043103	1043282	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	intron	1043283	1043362	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	CDS	1043363	1043443	1	-	0	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	exon	1043363	1043443	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	intron	1043444	1043520	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	CDS	1043521	1043599	1	-	1	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	exon	1043521	1043599	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	intron	1043600	1043723	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	CDS	1043724	1043851	1	-	0	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	exon	1043724	1043851	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	intron	1043852	1043938	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	CDS	1043939	1044058	1	-	0	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	exon	1043939	1044058	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	intron	1044059	1044136	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	CDS	1044137	1044436	0.82	-	0	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	exon	1044137	1044436	.	-	.	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
Ledus.S4	AUGUSTUS	start_codon	1044434	1044436	.	-	0	transcript_id "Ledus.S4G015000.t1"; gene_id "Ledus.S4G015000"
# This transcript jg6545.t2 is derived from g3988.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6546.t1 is derived from g3989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32251430	32253061	.	+	.	Ledus.S1G396700
Ledus.S1	AUGUSTUS	transcript	32251430	32253061	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	start_codon	32251430	32251432	.	+	0	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	CDS	32251430	32251591	1	+	0	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	exon	32251430	32251591	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	intron	32251592	32251698	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	CDS	32251699	32251788	1	+	0	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	exon	32251699	32251788	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	intron	32251789	32251923	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	CDS	32251924	32252075	1	+	0	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	exon	32251924	32252075	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	intron	32252076	32252160	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	CDS	32252161	32252296	1	+	1	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	exon	32252161	32252296	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	intron	32252297	32252474	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	CDS	32252475	32252630	1	+	0	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	exon	32252475	32252630	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	intron	32252631	32252743	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	CDS	32252744	32252823	1	+	0	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	exon	32252744	32252823	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	intron	32252824	32252970	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	CDS	32252971	32253061	0.98	+	1	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	exon	32252971	32253061	.	+	.	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
Ledus.S1	AUGUSTUS	stop_codon	32253062	32253064	.	+	0	transcript_id "Ledus.S1G396700.t1"; gene_id "Ledus.S1G396700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg33.t1 is derived from g9545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C12	AUGUSTUS	gene	135981	136187	.	+	.	Ledus.C12G000400
Ledus.C12	AUGUSTUS	transcript	135981	136187	.	+	.	transcript_id "Ledus.C12G000400.t1"; gene_id "Ledus.C12G000400"
Ledus.C12	AUGUSTUS	start_codon	135981	135983	.	+	0	transcript_id "Ledus.C12G000400.t1"; gene_id "Ledus.C12G000400"
Ledus.C12	AUGUSTUS	CDS	135981	136187	0.53	+	0	transcript_id "Ledus.C12G000400.t1"; gene_id "Ledus.C12G000400"
Ledus.C12	AUGUSTUS	exon	135981	136187	.	+	.	transcript_id "Ledus.C12G000400.t1"; gene_id "Ledus.C12G000400"
Ledus.C12	AUGUSTUS	stop_codon	136188	136190	.	+	0	transcript_id "Ledus.C12G000400.t1"; gene_id "Ledus.C12G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9619.t1 is derived from g10649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8432914	8433858	.	+	.	Ledus.S3G109600
Ledus.S3	AUGUSTUS	transcript	8432914	8433858	.	+	.	transcript_id "Ledus.S3G109600.t1"; gene_id "Ledus.S3G109600"
Ledus.S3	AUGUSTUS	start_codon	8432914	8432916	.	+	0	transcript_id "Ledus.S3G109600.t1"; gene_id "Ledus.S3G109600"
Ledus.S3	AUGUSTUS	CDS	8432914	8433858	1	+	0	transcript_id "Ledus.S3G109600.t1"; gene_id "Ledus.S3G109600"
Ledus.S3	AUGUSTUS	exon	8432914	8433858	.	+	.	transcript_id "Ledus.S3G109600.t1"; gene_id "Ledus.S3G109600"
Ledus.S3	AUGUSTUS	stop_codon	8433859	8433861	.	+	0	transcript_id "Ledus.S3G109600.t1"; gene_id "Ledus.S3G109600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2019.t1 is derived from g8882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14204831	14207879	.	+	.	Ledus.S2G190100
Ledus.S2	AUGUSTUS	transcript	14204831	14207879	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	start_codon	14204831	14204833	.	+	0	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14204831	14205133	0.69	+	0	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14204831	14205133	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	intron	14205134	14205370	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14205371	14205445	1	+	0	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14205371	14205445	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	intron	14205446	14205668	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14205669	14205713	1	+	0	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14205669	14205713	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	intron	14205714	14205864	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14205865	14205939	1	+	0	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14205865	14205939	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	intron	14205940	14206065	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14206066	14206153	1	+	0	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14206066	14206153	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	intron	14206154	14206333	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14206334	14206458	1	+	2	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14206334	14206458	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	intron	14206459	14206649	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14206650	14206745	1	+	0	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14206650	14206745	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	intron	14206746	14206833	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14206834	14206900	1	+	0	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14206834	14206900	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	intron	14206901	14206986	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14206987	14207102	0.89	+	2	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14206987	14207102	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	intron	14207103	14207206	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14207207	14207285	1	+	0	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14207207	14207285	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	intron	14207286	14207374	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14207375	14207467	1	+	2	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14207375	14207467	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	intron	14207468	14207686	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14207687	14207775	0.78	+	2	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14207687	14207775	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	intron	14207776	14207867	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	CDS	14207868	14207879	1	+	0	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	exon	14207868	14207879	.	+	.	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
Ledus.S2	AUGUSTUS	stop_codon	14207880	14207882	.	+	0	transcript_id "Ledus.S2G190100.t1"; gene_id "Ledus.S2G190100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2472.t1 is derived from g9335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18358516	18358903	.	-	.	Ledus.S2G235400
Ledus.S2	AUGUSTUS	transcript	18358516	18358903	.	-	.	transcript_id "Ledus.S2G235400.t1"; gene_id "Ledus.S2G235400"
Ledus.S2	AUGUSTUS	stop_codon	18358513	18358515	.	-	0	transcript_id "Ledus.S2G235400.t1"; gene_id "Ledus.S2G235400"
Ledus.S2	AUGUSTUS	CDS	18358516	18358540	0.66	-	1	transcript_id "Ledus.S2G235400.t1"; gene_id "Ledus.S2G235400"
Ledus.S2	AUGUSTUS	exon	18358516	18358540	.	-	.	transcript_id "Ledus.S2G235400.t1"; gene_id "Ledus.S2G235400"
Ledus.S2	AUGUSTUS	intron	18358541	18358715	.	-	.	transcript_id "Ledus.S2G235400.t1"; gene_id "Ledus.S2G235400"
Ledus.S2	AUGUSTUS	CDS	18358716	18358903	0.25	-	0	transcript_id "Ledus.S2G235400.t1"; gene_id "Ledus.S2G235400"
Ledus.S2	AUGUSTUS	exon	18358716	18358903	.	-	.	transcript_id "Ledus.S2G235400.t1"; gene_id "Ledus.S2G235400"
Ledus.S2	AUGUSTUS	start_codon	18358901	18358903	.	-	0	transcript_id "Ledus.S2G235400.t1"; gene_id "Ledus.S2G235400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6357.t1 is derived from g3800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30729255	30732826	.	-	.	Ledus.S1G377800
Ledus.S1	AUGUSTUS	transcript	30729255	30732826	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	stop_codon	30729252	30729254	.	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30729255	30729282	0.82	-	1	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30729255	30729282	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30729283	30729415	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30729416	30729435	0.92	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30729416	30729435	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30729436	30729878	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30729879	30729935	1	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30729879	30729935	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30729936	30730017	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30730018	30730113	0.95	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30730018	30730113	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30730114	30730233	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30730234	30730383	0.95	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30730234	30730383	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30730384	30730498	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30730499	30730579	1	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30730499	30730579	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30730580	30730679	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30730680	30730772	1	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30730680	30730772	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30730773	30730922	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30730923	30731015	1	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30730923	30731015	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30731016	30731191	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30731192	30731346	1	-	2	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30731192	30731346	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30731347	30731445	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30731446	30731536	1	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30731446	30731536	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30731537	30731627	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30731628	30731811	0.6	-	1	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30731628	30731811	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30731812	30731920	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30731921	30732009	1	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30731921	30732009	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30732010	30732102	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30732103	30732231	1	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30732103	30732231	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30732232	30732317	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30732318	30732401	1	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30732318	30732401	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	intron	30732402	30732481	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	CDS	30732482	30732826	0.99	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	exon	30732482	30732826	.	-	.	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
Ledus.S1	AUGUSTUS	start_codon	30732824	30732826	.	-	0	transcript_id "Ledus.S1G377800.t1"; gene_id "Ledus.S1G377800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2697.t1 is derived from g130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2053033	2053269	.	+	.	Ledus.S1G011800
Ledus.S1	AUGUSTUS	transcript	2053033	2053269	.	+	.	transcript_id "Ledus.S1G011800.t1"; gene_id "Ledus.S1G011800"
Ledus.S1	AUGUSTUS	start_codon	2053033	2053035	.	+	0	transcript_id "Ledus.S1G011800.t1"; gene_id "Ledus.S1G011800"
Ledus.S1	AUGUSTUS	CDS	2053033	2053269	1	+	0	transcript_id "Ledus.S1G011800.t1"; gene_id "Ledus.S1G011800"
Ledus.S1	AUGUSTUS	exon	2053033	2053269	.	+	.	transcript_id "Ledus.S1G011800.t1"; gene_id "Ledus.S1G011800"
Ledus.S1	AUGUSTUS	stop_codon	2053270	2053272	.	+	0	transcript_id "Ledus.S1G011800.t1"; gene_id "Ledus.S1G011800"
# This transcript jg2193.t2 is derived from g9056.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2194.t1 is derived from g9057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15885514	15887601	.	+	.	Ledus.S2G207600
Ledus.S2	AUGUSTUS	transcript	15885514	15887601	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	start_codon	15885514	15885516	.	+	0	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	CDS	15885514	15885822	0.88	+	0	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	exon	15885514	15885822	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	intron	15885823	15885919	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	CDS	15885920	15886447	0.97	+	0	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	exon	15885920	15886447	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	intron	15886448	15886578	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	CDS	15886579	15886756	1	+	0	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	exon	15886579	15886756	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	intron	15886757	15886854	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	CDS	15886855	15886952	1	+	2	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	exon	15886855	15886952	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	intron	15886953	15887170	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	CDS	15887171	15887267	1	+	0	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	exon	15887171	15887267	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	intron	15887268	15887360	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	CDS	15887361	15887446	1	+	2	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	exon	15887361	15887446	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	intron	15887447	15887541	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	CDS	15887542	15887601	1	+	0	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	exon	15887542	15887601	.	+	.	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
Ledus.S2	AUGUSTUS	stop_codon	15887602	15887604	.	+	0	transcript_id "Ledus.S2G207600.t1"; gene_id "Ledus.S2G207600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2850.t1 is derived from g284.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4158777	4168321	.	-	.	Ledus.S1G027100
Ledus.S1	AUGUSTUS	transcript	4158777	4168321	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	stop_codon	4158774	4158776	.	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4158777	4158919	0.79	-	2	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4158777	4158919	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4158920	4159056	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4159057	4159101	0.72	-	2	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4159057	4159101	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4159102	4159253	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4159254	4159426	1	-	1	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4159254	4159426	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4159427	4159515	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4159516	4159585	0.73	-	2	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4159516	4159585	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4159586	4159693	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4159694	4159829	0.68	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4159694	4159829	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4159830	4159951	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4159952	4160130	1	-	2	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4159952	4160130	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4160131	4160229	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4160230	4160410	1	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4160230	4160410	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4160411	4160509	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4160510	4160569	1	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4160510	4160569	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4160570	4160750	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4160751	4160829	1	-	1	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4160751	4160829	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4160830	4160937	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4160938	4161083	1	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4160938	4161083	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4161084	4161245	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4161246	4161416	1	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4161246	4161416	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4161417	4161502	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4161503	4161634	1	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4161503	4161634	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4161635	4161724	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4161725	4161900	0.8	-	2	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4161725	4161900	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4161901	4161975	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4161976	4161989	0.85	-	1	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4161976	4161989	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4161990	4162085	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4162086	4162201	1	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4162086	4162201	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4162202	4162301	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4162302	4162490	0.73	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4162302	4162490	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4162491	4162616	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4162617	4162933	0.82	-	2	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4162617	4162933	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4162934	4163041	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4163042	4163311	0.85	-	2	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4163042	4163311	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4163312	4163519	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4163520	4163598	0.91	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4163520	4163598	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4163599	4163675	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4163676	4163783	0.91	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4163676	4163783	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4163784	4163894	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4163895	4163991	0.95	-	1	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4163895	4163991	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4163992	4164080	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4164081	4164173	0.73	-	1	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4164081	4164173	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4164174	4164300	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4164301	4164467	0.7	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4164301	4164467	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4164468	4164669	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4164670	4164767	1	-	2	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4164670	4164767	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4164768	4164862	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4164863	4165080	0.96	-	1	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4164863	4165080	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4165081	4165161	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4165162	4165285	0.88	-	2	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4165162	4165285	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4165286	4165396	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4165397	4165562	0.92	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4165397	4165562	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4165563	4165657	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4165658	4165771	1	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4165658	4165771	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4165772	4165868	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4165869	4165998	1	-	1	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4165869	4165998	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4165999	4166155	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4166156	4166621	0.66	-	2	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4166156	4166621	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4166622	4166677	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4166678	4167017	1	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4166678	4167017	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4167018	4167176	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4167177	4167335	0.77	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4167177	4167335	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4167336	4167446	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4167447	4167535	0.84	-	2	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4167447	4167535	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4167536	4167720	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4167721	4167790	0.41	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4167721	4167790	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4167791	4167956	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4167957	4168149	1	-	1	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4167957	4168149	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4168150	4168301	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4168302	4168321	0.96	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4168302	4168321	.	-	.	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	start_codon	4168319	4168321	.	-	0	transcript_id "Ledus.S1G027100.t1"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	transcript	4158777	4168321	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	stop_codon	4158774	4158776	.	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4158777	4158919	0.82	-	2	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4158777	4158919	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4158920	4159056	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4159057	4159101	0.8	-	2	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4159057	4159101	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4159102	4159253	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4159254	4159426	1	-	1	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4159254	4159426	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4159427	4159515	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4159516	4159585	0.75	-	2	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4159516	4159585	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4159586	4159693	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4159694	4159829	0.69	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4159694	4159829	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4159830	4159951	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4159952	4160130	0.99	-	2	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4159952	4160130	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4160131	4160229	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4160230	4160410	1	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4160230	4160410	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4160411	4160509	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4160510	4160569	1	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4160510	4160569	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4160570	4160750	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4160751	4160829	0.99	-	1	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4160751	4160829	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4160830	4160937	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4160938	4161083	0.99	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4160938	4161083	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4161084	4161245	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4161246	4161416	1	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4161246	4161416	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4161417	4161502	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4161503	4161634	1	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4161503	4161634	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4161635	4161724	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4161725	4161911	1	-	1	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4161725	4161911	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4161912	4162085	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4162086	4162201	0.98	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4162086	4162201	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4162202	4162301	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4162302	4162490	0.74	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4162302	4162490	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4162491	4162616	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4162617	4162933	0.77	-	2	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4162617	4162933	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4162934	4163041	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4163042	4163311	0.87	-	2	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4163042	4163311	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4163312	4163519	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4163520	4163598	0.92	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4163520	4163598	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4163599	4163675	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4163676	4163783	0.92	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4163676	4163783	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4163784	4163894	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4163895	4163991	0.95	-	1	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4163895	4163991	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4163992	4164080	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4164081	4164173	0.66	-	1	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4164081	4164173	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4164174	4164300	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4164301	4164467	0.63	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4164301	4164467	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4164468	4164669	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4164670	4164767	1	-	2	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4164670	4164767	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4164768	4164862	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4164863	4165080	0.97	-	1	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4164863	4165080	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4165081	4165161	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4165162	4165285	0.83	-	2	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4165162	4165285	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4165286	4165396	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4165397	4165562	0.92	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4165397	4165562	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4165563	4165657	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4165658	4165771	1	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4165658	4165771	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4165772	4165868	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4165869	4165998	1	-	1	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4165869	4165998	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4165999	4166155	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4166156	4166621	0.56	-	2	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4166156	4166621	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4166622	4166677	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4166678	4167017	1	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4166678	4167017	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4167018	4167176	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4167177	4167335	0.67	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4167177	4167335	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4167336	4167446	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4167447	4167535	0.77	-	2	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4167447	4167535	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4167536	4167720	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4167721	4167790	0.38	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4167721	4167790	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4167791	4167956	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4167957	4168149	0.99	-	1	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4167957	4168149	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	intron	4168150	4168301	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	CDS	4168302	4168321	0.99	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	exon	4168302	4168321	.	-	.	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
Ledus.S1	AUGUSTUS	start_codon	4168319	4168321	.	-	0	transcript_id "Ledus.S1G027100.t2"; gene_id "Ledus.S1G027100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8397.t1 is derived from g13069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11472633	11474073	.	+	.	Ledus.S5G117500
Ledus.S5	AUGUSTUS	transcript	11472633	11474073	.	+	.	transcript_id "Ledus.S5G117500.t1"; gene_id "Ledus.S5G117500"
Ledus.S5	AUGUSTUS	start_codon	11472633	11472635	.	+	0	transcript_id "Ledus.S5G117500.t1"; gene_id "Ledus.S5G117500"
Ledus.S5	AUGUSTUS	CDS	11472633	11472742	1	+	0	transcript_id "Ledus.S5G117500.t1"; gene_id "Ledus.S5G117500"
Ledus.S5	AUGUSTUS	exon	11472633	11472742	.	+	.	transcript_id "Ledus.S5G117500.t1"; gene_id "Ledus.S5G117500"
Ledus.S5	AUGUSTUS	intron	11472743	11473073	.	+	.	transcript_id "Ledus.S5G117500.t1"; gene_id "Ledus.S5G117500"
Ledus.S5	AUGUSTUS	CDS	11473074	11474073	1	+	1	transcript_id "Ledus.S5G117500.t1"; gene_id "Ledus.S5G117500"
Ledus.S5	AUGUSTUS	exon	11473074	11474073	.	+	.	transcript_id "Ledus.S5G117500.t1"; gene_id "Ledus.S5G117500"
Ledus.S5	AUGUSTUS	stop_codon	11474074	11474076	.	+	0	transcript_id "Ledus.S5G117500.t1"; gene_id "Ledus.S5G117500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6401.t1 is derived from g3844.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31048018	31055482	.	+	.	Ledus.S1G382200
Ledus.S1	AUGUSTUS	transcript	31048018	31055482	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	start_codon	31048018	31048020	.	+	0	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31048018	31048132	0.85	+	0	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31048018	31048132	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31048133	31048292	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31048293	31048396	1	+	2	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31048293	31048396	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31048397	31048475	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31048476	31049402	1	+	0	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31048476	31049402	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31049403	31049537	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31049538	31049667	1	+	0	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31049538	31049667	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31049668	31049773	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31049774	31049959	1	+	2	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31049774	31049959	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31049960	31050040	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31050041	31050076	0.99	+	2	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31050041	31050076	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31050077	31050172	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31050173	31051012	0.99	+	2	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31050173	31051012	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31051013	31051144	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31051145	31054280	0.96	+	2	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31051145	31054280	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31054281	31054366	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31054367	31054590	1	+	1	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31054367	31054590	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31054591	31054775	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31054776	31054880	1	+	2	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31054776	31054880	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31054881	31055045	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31055046	31055482	1	+	2	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31055046	31055482	.	+	.	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	stop_codon	31055483	31055485	.	+	0	transcript_id "Ledus.S1G382200.t1"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	transcript	31048018	31055482	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	start_codon	31048018	31048020	.	+	0	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31048018	31048132	0.84	+	0	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31048018	31048132	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31048133	31048292	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31048293	31048396	1	+	2	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31048293	31048396	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31048397	31048469	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31048470	31049402	1	+	0	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31048470	31049402	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31049403	31049537	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31049538	31049667	0.99	+	0	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31049538	31049667	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31049668	31049773	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31049774	31049959	1	+	2	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31049774	31049959	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31049960	31050040	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31050041	31050076	1	+	2	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31050041	31050076	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31050077	31050172	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31050173	31051012	1	+	2	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31050173	31051012	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31051013	31051144	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31051145	31054280	0.92	+	2	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31051145	31054280	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31054281	31054366	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31054367	31054590	1	+	1	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31054367	31054590	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31054591	31054775	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31054776	31054880	1	+	2	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31054776	31054880	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	intron	31054881	31055045	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	CDS	31055046	31055482	1	+	2	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	exon	31055046	31055482	.	+	.	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
Ledus.S1	AUGUSTUS	stop_codon	31055483	31055485	.	+	0	transcript_id "Ledus.S1G382200.t2"; gene_id "Ledus.S1G382200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1929.t1 is derived from g8792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13539561	13542226	.	+	.	Ledus.S2G181100
Ledus.S2	AUGUSTUS	transcript	13539561	13542226	.	+	.	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	start_codon	13539561	13539563	.	+	0	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	CDS	13539561	13540821	0.66	+	0	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	exon	13539561	13540821	.	+	.	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	intron	13540822	13540917	.	+	.	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	CDS	13540918	13541087	0.85	+	2	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	exon	13540918	13541087	.	+	.	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	intron	13541088	13541219	.	+	.	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	CDS	13541220	13541417	0.97	+	0	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	exon	13541220	13541417	.	+	.	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	intron	13541418	13541527	.	+	.	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	CDS	13541528	13542226	1	+	0	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	exon	13541528	13542226	.	+	.	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
Ledus.S2	AUGUSTUS	stop_codon	13542227	13542229	.	+	0	transcript_id "Ledus.S2G181100.t1"; gene_id "Ledus.S2G181100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13026.t1 is derived from g6836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3353243	3354931	.	+	.	Ledus.S6G008800
Ledus.S6	AUGUSTUS	transcript	3353243	3354931	.	+	.	transcript_id "Ledus.S6G008800.t1"; gene_id "Ledus.S6G008800"
Ledus.S6	AUGUSTUS	start_codon	3353243	3353245	.	+	0	transcript_id "Ledus.S6G008800.t1"; gene_id "Ledus.S6G008800"
Ledus.S6	AUGUSTUS	CDS	3353243	3354719	0.99	+	0	transcript_id "Ledus.S6G008800.t1"; gene_id "Ledus.S6G008800"
Ledus.S6	AUGUSTUS	exon	3353243	3354719	.	+	.	transcript_id "Ledus.S6G008800.t1"; gene_id "Ledus.S6G008800"
Ledus.S6	AUGUSTUS	intron	3354720	3354806	.	+	.	transcript_id "Ledus.S6G008800.t1"; gene_id "Ledus.S6G008800"
Ledus.S6	AUGUSTUS	CDS	3354807	3354931	0.85	+	2	transcript_id "Ledus.S6G008800.t1"; gene_id "Ledus.S6G008800"
Ledus.S6	AUGUSTUS	exon	3354807	3354931	.	+	.	transcript_id "Ledus.S6G008800.t1"; gene_id "Ledus.S6G008800"
Ledus.S6	AUGUSTUS	stop_codon	3354932	3354934	.	+	0	transcript_id "Ledus.S6G008800.t1"; gene_id "Ledus.S6G008800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5405.t1 is derived from g2844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24012953	24014989	.	-	.	Ledus.S1G282600
Ledus.S1	AUGUSTUS	transcript	24012953	24014989	.	-	.	transcript_id "Ledus.S1G282600.t1"; gene_id "Ledus.S1G282600"
Ledus.S1	AUGUSTUS	stop_codon	24012950	24012952	.	-	0	transcript_id "Ledus.S1G282600.t1"; gene_id "Ledus.S1G282600"
Ledus.S1	AUGUSTUS	CDS	24012953	24014989	0.98	-	0	transcript_id "Ledus.S1G282600.t1"; gene_id "Ledus.S1G282600"
Ledus.S1	AUGUSTUS	exon	24012953	24014989	.	-	.	transcript_id "Ledus.S1G282600.t1"; gene_id "Ledus.S1G282600"
Ledus.S1	AUGUSTUS	start_codon	24014987	24014989	.	-	0	transcript_id "Ledus.S1G282600.t1"; gene_id "Ledus.S1G282600"
# This transcript jg9842.t2 is derived from g10872.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9843.t1 is derived from g10873.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10480795	10481607	.	+	.	Ledus.S3G132000
Ledus.S3	AUGUSTUS	transcript	10480795	10481607	.	+	.	transcript_id "Ledus.S3G132000.t1"; gene_id "Ledus.S3G132000"
Ledus.S3	AUGUSTUS	start_codon	10480795	10480797	.	+	0	transcript_id "Ledus.S3G132000.t1"; gene_id "Ledus.S3G132000"
Ledus.S3	AUGUSTUS	CDS	10480795	10480797	1	+	0	transcript_id "Ledus.S3G132000.t1"; gene_id "Ledus.S3G132000"
Ledus.S3	AUGUSTUS	exon	10480795	10480797	.	+	.	transcript_id "Ledus.S3G132000.t1"; gene_id "Ledus.S3G132000"
Ledus.S3	AUGUSTUS	intron	10480798	10481013	.	+	.	transcript_id "Ledus.S3G132000.t1"; gene_id "Ledus.S3G132000"
Ledus.S3	AUGUSTUS	CDS	10481014	10481279	1	+	0	transcript_id "Ledus.S3G132000.t1"; gene_id "Ledus.S3G132000"
Ledus.S3	AUGUSTUS	exon	10481014	10481279	.	+	.	transcript_id "Ledus.S3G132000.t1"; gene_id "Ledus.S3G132000"
Ledus.S3	AUGUSTUS	intron	10481280	10481459	.	+	.	transcript_id "Ledus.S3G132000.t1"; gene_id "Ledus.S3G132000"
Ledus.S3	AUGUSTUS	CDS	10481460	10481607	0.93	+	1	transcript_id "Ledus.S3G132000.t1"; gene_id "Ledus.S3G132000"
Ledus.S3	AUGUSTUS	exon	10481460	10481607	.	+	.	transcript_id "Ledus.S3G132000.t1"; gene_id "Ledus.S3G132000"
Ledus.S3	AUGUSTUS	stop_codon	10481608	10481610	.	+	0	transcript_id "Ledus.S3G132000.t1"; gene_id "Ledus.S3G132000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10265.t1 is derived from g11295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13906580	13908182	.	+	.	Ledus.S3G174200
Ledus.S3	AUGUSTUS	transcript	13906580	13908182	.	+	.	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	start_codon	13906580	13906582	.	+	0	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	CDS	13906580	13906784	0.66	+	0	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	exon	13906580	13906784	.	+	.	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	intron	13906785	13906888	.	+	.	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	CDS	13906889	13907173	0.96	+	2	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	exon	13906889	13907173	.	+	.	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	intron	13907174	13907281	.	+	.	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	CDS	13907282	13907648	1	+	2	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	exon	13907282	13907648	.	+	.	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	intron	13907649	13907735	.	+	.	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	CDS	13907736	13907946	0.92	+	1	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	exon	13907736	13907946	.	+	.	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	intron	13907947	13908047	.	+	.	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	CDS	13908048	13908182	0.74	+	0	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	exon	13908048	13908182	.	+	.	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
Ledus.S3	AUGUSTUS	stop_codon	13908183	13908185	.	+	0	transcript_id "Ledus.S3G174200.t1"; gene_id "Ledus.S3G174200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4506.t1 is derived from g1942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17412569	17413520	.	-	.	Ledus.S1G192700
Ledus.S1	AUGUSTUS	transcript	17412569	17413520	.	-	.	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	stop_codon	17412566	17412568	.	-	0	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	CDS	17412569	17412598	0.94	-	0	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	exon	17412569	17412598	.	-	.	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	intron	17412599	17412689	.	-	.	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	CDS	17412690	17412746	0.91	-	0	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	exon	17412690	17412746	.	-	.	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	intron	17412747	17413074	.	-	.	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	CDS	17413075	17413080	0.98	-	0	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	exon	17413075	17413080	.	-	.	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	intron	17413081	17413223	.	-	.	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	CDS	17413224	17413325	1	-	0	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	exon	17413224	17413325	.	-	.	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	intron	17413326	17413508	.	-	.	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	CDS	17413509	17413520	1	-	0	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	exon	17413509	17413520	.	-	.	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
Ledus.S1	AUGUSTUS	start_codon	17413518	17413520	.	-	0	transcript_id "Ledus.S1G192700.t1"; gene_id "Ledus.S1G192700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg941.t1 is derived from g7802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6244873	6245338	.	-	.	Ledus.S2G082300
Ledus.S2	AUGUSTUS	transcript	6244873	6245338	.	-	.	transcript_id "Ledus.S2G082300.t1"; gene_id "Ledus.S2G082300"
Ledus.S2	AUGUSTUS	stop_codon	6244870	6244872	.	-	0	transcript_id "Ledus.S2G082300.t1"; gene_id "Ledus.S2G082300"
Ledus.S2	AUGUSTUS	CDS	6244873	6245053	0.68	-	1	transcript_id "Ledus.S2G082300.t1"; gene_id "Ledus.S2G082300"
Ledus.S2	AUGUSTUS	exon	6244873	6245053	.	-	.	transcript_id "Ledus.S2G082300.t1"; gene_id "Ledus.S2G082300"
Ledus.S2	AUGUSTUS	intron	6245054	6245267	.	-	.	transcript_id "Ledus.S2G082300.t1"; gene_id "Ledus.S2G082300"
Ledus.S2	AUGUSTUS	CDS	6245268	6245338	0.68	-	0	transcript_id "Ledus.S2G082300.t1"; gene_id "Ledus.S2G082300"
Ledus.S2	AUGUSTUS	exon	6245268	6245338	.	-	.	transcript_id "Ledus.S2G082300.t1"; gene_id "Ledus.S2G082300"
Ledus.S2	AUGUSTUS	start_codon	6245336	6245338	.	-	0	transcript_id "Ledus.S2G082300.t1"; gene_id "Ledus.S2G082300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10544.t1 is derived from g11574.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16047477	16047734	.	+	.	Ledus.S3G202100
Ledus.S3	AUGUSTUS	transcript	16047477	16047734	.	+	.	transcript_id "Ledus.S3G202100.t1"; gene_id "Ledus.S3G202100"
Ledus.S3	AUGUSTUS	start_codon	16047477	16047479	.	+	0	transcript_id "Ledus.S3G202100.t1"; gene_id "Ledus.S3G202100"
Ledus.S3	AUGUSTUS	CDS	16047477	16047734	0.88	+	0	transcript_id "Ledus.S3G202100.t1"; gene_id "Ledus.S3G202100"
Ledus.S3	AUGUSTUS	exon	16047477	16047734	.	+	.	transcript_id "Ledus.S3G202100.t1"; gene_id "Ledus.S3G202100"
Ledus.S3	AUGUSTUS	stop_codon	16047735	16047737	.	+	0	transcript_id "Ledus.S3G202100.t1"; gene_id "Ledus.S3G202100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11272.t1 is derived from g4890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3124259	3124609	.	+	.	Ledus.S4G042800
Ledus.S4	AUGUSTUS	transcript	3124259	3124609	.	+	.	transcript_id "Ledus.S4G042800.t1"; gene_id "Ledus.S4G042800"
Ledus.S4	AUGUSTUS	start_codon	3124259	3124261	.	+	0	transcript_id "Ledus.S4G042800.t1"; gene_id "Ledus.S4G042800"
Ledus.S4	AUGUSTUS	CDS	3124259	3124609	0.64	+	0	transcript_id "Ledus.S4G042800.t1"; gene_id "Ledus.S4G042800"
Ledus.S4	AUGUSTUS	exon	3124259	3124609	.	+	.	transcript_id "Ledus.S4G042800.t1"; gene_id "Ledus.S4G042800"
Ledus.S4	AUGUSTUS	stop_codon	3124610	3124612	.	+	0	transcript_id "Ledus.S4G042800.t1"; gene_id "Ledus.S4G042800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg157.t1 is derived from g7018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	392161	393702	.	+	.	Ledus.S2G003900
Ledus.S2	AUGUSTUS	transcript	392161	393702	.	+	.	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	start_codon	392161	392163	.	+	0	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	CDS	392161	392413	0.75	+	0	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	exon	392161	392413	.	+	.	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	intron	392414	392481	.	+	.	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	CDS	392482	392612	0.66	+	2	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	exon	392482	392612	.	+	.	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	intron	392613	392720	.	+	.	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	CDS	392721	392960	0.98	+	0	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	exon	392721	392960	.	+	.	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	intron	392961	393061	.	+	.	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	CDS	393062	393320	0.96	+	0	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	exon	393062	393320	.	+	.	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	intron	393321	393412	.	+	.	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	CDS	393413	393515	0.73	+	2	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	exon	393413	393515	.	+	.	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	intron	393516	393605	.	+	.	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	CDS	393606	393702	0.85	+	1	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	exon	393606	393702	.	+	.	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
Ledus.S2	AUGUSTUS	stop_codon	393703	393705	.	+	0	transcript_id "Ledus.S2G003900.t1"; gene_id "Ledus.S2G003900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8815.t1 is derived from g9845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2113266	2116560	.	-	.	Ledus.S3G029200
Ledus.S3	AUGUSTUS	transcript	2113266	2116560	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	stop_codon	2113263	2113265	.	-	0	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	CDS	2113266	2113706	0.95	-	0	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	exon	2113266	2113706	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	intron	2113707	2113802	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	CDS	2113803	2113970	1	-	0	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	exon	2113803	2113970	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	intron	2113971	2114066	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	CDS	2114067	2114178	1	-	1	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	exon	2114067	2114178	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	intron	2114179	2114283	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	CDS	2114284	2114384	1	-	0	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	exon	2114284	2114384	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	intron	2114385	2114518	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	CDS	2114519	2115458	1	-	1	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	exon	2114519	2115458	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	intron	2115459	2115549	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	CDS	2115550	2115986	1	-	0	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	exon	2115550	2115986	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	intron	2115987	2116068	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	CDS	2116069	2116260	1	-	0	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	exon	2116069	2116260	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	intron	2116261	2116350	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	CDS	2116351	2116560	0.81	-	0	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	exon	2116351	2116560	.	-	.	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
Ledus.S3	AUGUSTUS	start_codon	2116558	2116560	.	-	0	transcript_id "Ledus.S3G029200.t1"; gene_id "Ledus.S3G029200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8242.t1 is derived from g12913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10107232	10111957	.	+	.	Ledus.S5G102000
Ledus.S5	AUGUSTUS	transcript	10107232	10111957	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	start_codon	10107232	10107234	.	+	0	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10107232	10107420	0.83	+	0	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10107232	10107420	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	intron	10107421	10107760	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10107761	10107898	0.99	+	0	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10107761	10107898	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	intron	10107899	10108015	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10108016	10108462	0.96	+	0	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10108016	10108462	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	intron	10108463	10108643	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10108644	10108797	1	+	0	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10108644	10108797	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	intron	10108798	10108946	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10108947	10109533	0.98	+	2	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10108947	10109533	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	intron	10109534	10109667	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10109668	10109763	1	+	0	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10109668	10109763	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	intron	10109764	10109933	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10109934	10110025	1	+	0	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10109934	10110025	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	intron	10110026	10110157	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10110158	10110441	1	+	1	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10110158	10110441	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	intron	10110442	10110639	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10110640	10110746	1	+	2	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10110640	10110746	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	intron	10110747	10110854	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10110855	10110955	1	+	0	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10110855	10110955	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	intron	10110956	10111129	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10111130	10111207	1	+	1	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10111130	10111207	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	intron	10111208	10111479	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10111480	10111629	1	+	1	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10111480	10111629	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	intron	10111630	10111725	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	CDS	10111726	10111957	0.31	+	1	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	exon	10111726	10111957	.	+	.	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
Ledus.S5	AUGUSTUS	stop_codon	10111958	10111960	.	+	0	transcript_id "Ledus.S5G102000.t1"; gene_id "Ledus.S5G102000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2713.t1 is derived from g146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2462910	2463424	.	-	.	Ledus.S1G013400
Ledus.S1	AUGUSTUS	transcript	2462910	2463424	.	-	.	transcript_id "Ledus.S1G013400.t1"; gene_id "Ledus.S1G013400"
Ledus.S1	AUGUSTUS	stop_codon	2462907	2462909	.	-	0	transcript_id "Ledus.S1G013400.t1"; gene_id "Ledus.S1G013400"
Ledus.S1	AUGUSTUS	CDS	2462910	2462997	0.39	-	1	transcript_id "Ledus.S1G013400.t1"; gene_id "Ledus.S1G013400"
Ledus.S1	AUGUSTUS	exon	2462910	2462997	.	-	.	transcript_id "Ledus.S1G013400.t1"; gene_id "Ledus.S1G013400"
Ledus.S1	AUGUSTUS	intron	2462998	2463095	.	-	.	transcript_id "Ledus.S1G013400.t1"; gene_id "Ledus.S1G013400"
Ledus.S1	AUGUSTUS	CDS	2463096	2463171	0.64	-	2	transcript_id "Ledus.S1G013400.t1"; gene_id "Ledus.S1G013400"
Ledus.S1	AUGUSTUS	exon	2463096	2463171	.	-	.	transcript_id "Ledus.S1G013400.t1"; gene_id "Ledus.S1G013400"
Ledus.S1	AUGUSTUS	intron	2463172	2463345	.	-	.	transcript_id "Ledus.S1G013400.t1"; gene_id "Ledus.S1G013400"
Ledus.S1	AUGUSTUS	CDS	2463346	2463424	0.57	-	0	transcript_id "Ledus.S1G013400.t1"; gene_id "Ledus.S1G013400"
Ledus.S1	AUGUSTUS	exon	2463346	2463424	.	-	.	transcript_id "Ledus.S1G013400.t1"; gene_id "Ledus.S1G013400"
Ledus.S1	AUGUSTUS	start_codon	2463422	2463424	.	-	0	transcript_id "Ledus.S1G013400.t1"; gene_id "Ledus.S1G013400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9381.t1 is derived from g10411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6451704	6452167	.	+	.	Ledus.S3G085800
Ledus.S3	AUGUSTUS	transcript	6451704	6452167	.	+	.	transcript_id "Ledus.S3G085800.t1"; gene_id "Ledus.S3G085800"
Ledus.S3	AUGUSTUS	start_codon	6451704	6451706	.	+	0	transcript_id "Ledus.S3G085800.t1"; gene_id "Ledus.S3G085800"
Ledus.S3	AUGUSTUS	CDS	6451704	6451917	0.63	+	0	transcript_id "Ledus.S3G085800.t1"; gene_id "Ledus.S3G085800"
Ledus.S3	AUGUSTUS	exon	6451704	6451917	.	+	.	transcript_id "Ledus.S3G085800.t1"; gene_id "Ledus.S3G085800"
Ledus.S3	AUGUSTUS	intron	6451918	6452060	.	+	.	transcript_id "Ledus.S3G085800.t1"; gene_id "Ledus.S3G085800"
Ledus.S3	AUGUSTUS	CDS	6452061	6452167	1	+	2	transcript_id "Ledus.S3G085800.t1"; gene_id "Ledus.S3G085800"
Ledus.S3	AUGUSTUS	exon	6452061	6452167	.	+	.	transcript_id "Ledus.S3G085800.t1"; gene_id "Ledus.S3G085800"
Ledus.S3	AUGUSTUS	stop_codon	6452168	6452170	.	+	0	transcript_id "Ledus.S3G085800.t1"; gene_id "Ledus.S3G085800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8899.t1 is derived from g9929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2957129	2958110	.	-	.	Ledus.S3G037600
Ledus.S3	AUGUSTUS	transcript	2957129	2958110	.	-	.	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	stop_codon	2957126	2957128	.	-	0	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	CDS	2957129	2957276	1	-	1	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	exon	2957129	2957276	.	-	.	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	intron	2957277	2957374	.	-	.	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	CDS	2957375	2957436	1	-	0	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	exon	2957375	2957436	.	-	.	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	intron	2957437	2957532	.	-	.	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	CDS	2957533	2957949	0.99	-	0	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	exon	2957533	2957949	.	-	.	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	intron	2957950	2958029	.	-	.	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	CDS	2958030	2958110	0.35	-	0	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	exon	2958030	2958110	.	-	.	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
Ledus.S3	AUGUSTUS	start_codon	2958108	2958110	.	-	0	transcript_id "Ledus.S3G037600.t1"; gene_id "Ledus.S3G037600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3958.t1 is derived from g1394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13765423	13768343	.	-	.	Ledus.S1G137900
Ledus.S1	AUGUSTUS	transcript	13765423	13768343	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	stop_codon	13765420	13765422	.	-	0	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13765423	13765598	0.95	-	2	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13765423	13765598	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13765599	13765674	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13765675	13765803	1	-	2	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13765675	13765803	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13765804	13765896	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13765897	13765981	0.98	-	0	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13765897	13765981	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13765982	13766085	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13766086	13766224	0.93	-	1	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13766086	13766224	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13766225	13766360	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13766361	13766413	1	-	0	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13766361	13766413	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13766414	13766494	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13766495	13766596	0.98	-	0	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13766495	13766596	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13766597	13766716	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13766717	13766786	0.98	-	1	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13766717	13766786	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13766787	13766888	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13766889	13766945	1	-	1	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13766889	13766945	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13766946	13767174	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13767175	13767264	1	-	1	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13767175	13767264	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13767265	13767416	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13767417	13767466	1	-	0	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13767417	13767466	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13767467	13767563	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13767564	13767638	1	-	0	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13767564	13767638	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13767639	13767749	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13767750	13767842	1	-	0	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13767750	13767842	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13767843	13767938	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13767939	13767979	0.64	-	2	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13767939	13767979	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	intron	13767980	13768066	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	CDS	13768067	13768343	0.63	-	0	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	exon	13768067	13768343	.	-	.	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
Ledus.S1	AUGUSTUS	start_codon	13768341	13768343	.	-	0	transcript_id "Ledus.S1G137900.t1"; gene_id "Ledus.S1G137900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg321.t1 is derived from g7182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1661885	1662905	.	+	.	Ledus.S2G020300
Ledus.S2	AUGUSTUS	transcript	1661885	1662905	.	+	.	transcript_id "Ledus.S2G020300.t1"; gene_id "Ledus.S2G020300"
Ledus.S2	AUGUSTUS	start_codon	1661885	1661887	.	+	0	transcript_id "Ledus.S2G020300.t1"; gene_id "Ledus.S2G020300"
Ledus.S2	AUGUSTUS	CDS	1661885	1662209	0.41	+	0	transcript_id "Ledus.S2G020300.t1"; gene_id "Ledus.S2G020300"
Ledus.S2	AUGUSTUS	exon	1661885	1662209	.	+	.	transcript_id "Ledus.S2G020300.t1"; gene_id "Ledus.S2G020300"
Ledus.S2	AUGUSTUS	intron	1662210	1662321	.	+	.	transcript_id "Ledus.S2G020300.t1"; gene_id "Ledus.S2G020300"
Ledus.S2	AUGUSTUS	CDS	1662322	1662905	0.74	+	2	transcript_id "Ledus.S2G020300.t1"; gene_id "Ledus.S2G020300"
Ledus.S2	AUGUSTUS	exon	1662322	1662905	.	+	.	transcript_id "Ledus.S2G020300.t1"; gene_id "Ledus.S2G020300"
Ledus.S2	AUGUSTUS	stop_codon	1662906	1662908	.	+	0	transcript_id "Ledus.S2G020300.t1"; gene_id "Ledus.S2G020300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12710.t1 is derived from g6332.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14024122	14026366	.	+	.	Ledus.S4G186600
Ledus.S4	AUGUSTUS	transcript	14024122	14026366	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	start_codon	14024122	14024124	.	+	0	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	CDS	14024122	14024453	0.95	+	0	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	exon	14024122	14024453	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	intron	14024454	14024861	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	CDS	14024862	14025012	1	+	1	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	exon	14024862	14025012	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	intron	14025013	14025100	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	CDS	14025101	14025268	1	+	0	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	exon	14025101	14025268	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	intron	14025269	14025348	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	CDS	14025349	14025575	1	+	0	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	exon	14025349	14025575	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	intron	14025576	14025646	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	CDS	14025647	14025770	1	+	1	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	exon	14025647	14025770	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	intron	14025771	14025852	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	CDS	14025853	14025915	1	+	0	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	exon	14025853	14025915	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	intron	14025916	14025999	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	CDS	14026000	14026143	1	+	0	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	exon	14026000	14026143	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	intron	14026144	14026234	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	CDS	14026235	14026366	1	+	0	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	exon	14026235	14026366	.	+	.	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
Ledus.S4	AUGUSTUS	stop_codon	14026367	14026369	.	+	0	transcript_id "Ledus.S4G186600.t1"; gene_id "Ledus.S4G186600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8945.t1 is derived from g9975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3379727	3381717	.	+	.	Ledus.S3G042200
Ledus.S3	AUGUSTUS	transcript	3379727	3381717	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	start_codon	3379727	3379729	.	+	0	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	CDS	3379727	3379923	0.95	+	0	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	exon	3379727	3379923	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	intron	3379924	3380250	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	CDS	3380251	3380372	1	+	1	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	exon	3380251	3380372	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	intron	3380373	3380451	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	CDS	3380452	3380564	1	+	2	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	exon	3380452	3380564	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	intron	3380565	3380638	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	CDS	3380639	3380712	1	+	0	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	exon	3380639	3380712	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	intron	3380713	3380840	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	CDS	3380841	3381105	1	+	1	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	exon	3380841	3381105	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	intron	3381106	3381188	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	CDS	3381189	3381320	0.99	+	0	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	exon	3381189	3381320	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	intron	3381321	3381423	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	CDS	3381424	3381562	0.99	+	0	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	exon	3381424	3381562	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	intron	3381563	3381667	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	CDS	3381668	3381717	0.98	+	2	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	exon	3381668	3381717	.	+	.	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
Ledus.S3	AUGUSTUS	stop_codon	3381718	3381720	.	+	0	transcript_id "Ledus.S3G042200.t1"; gene_id "Ledus.S3G042200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10981.t1 is derived from g4599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	989534	992641	.	-	.	Ledus.S4G013700
Ledus.S4	AUGUSTUS	transcript	989534	992641	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	stop_codon	989531	989533	.	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	989534	989668	0.97	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	989534	989668	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	989669	989758	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	989759	989855	1	-	1	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	989759	989855	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	989856	989952	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	989953	990038	1	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	989953	990038	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	990039	990112	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	990113	990184	1	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	990113	990184	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	990185	990280	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	990281	990399	1	-	2	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	990281	990399	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	990400	990477	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	990478	990585	1	-	2	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	990478	990585	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	990586	990680	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	990681	990741	1	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	990681	990741	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	990742	990878	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	990879	990938	1	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	990879	990938	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	990939	991070	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	991071	991131	1	-	1	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	991071	991131	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	991132	991246	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	991247	991338	1	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	991247	991338	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	991339	991471	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	991472	991558	1	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	991472	991558	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	991559	991633	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	991634	991717	1	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	991634	991717	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	991718	991802	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	991803	991868	1	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	991803	991868	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	991869	991950	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	991951	992067	1	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	991951	992067	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	992068	992144	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	992145	992299	1	-	2	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	992145	992299	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	intron	992300	992385	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	CDS	992386	992641	0.77	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	exon	992386	992641	.	-	.	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
Ledus.S4	AUGUSTUS	start_codon	992639	992641	.	-	0	transcript_id "Ledus.S4G013700.t1"; gene_id "Ledus.S4G013700"
# This transcript jg7673.t2 is derived from g12344.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7674.t1 is derived from g12345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5125521	5128790	.	+	.	Ledus.S5G045200
Ledus.S5	AUGUSTUS	transcript	5125521	5128790	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	start_codon	5125521	5125523	.	+	0	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	CDS	5125521	5125529	1	+	0	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	exon	5125521	5125529	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	intron	5125530	5125788	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	CDS	5125789	5125845	1	+	0	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	exon	5125789	5125845	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	intron	5125846	5126097	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	CDS	5126098	5126163	1	+	0	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	exon	5126098	5126163	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	intron	5126164	5126282	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	CDS	5126283	5126394	1	+	0	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	exon	5126283	5126394	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	intron	5126395	5126684	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	CDS	5126685	5126813	1	+	2	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	exon	5126685	5126813	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	intron	5126814	5126935	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	CDS	5126936	5127007	0.93	+	2	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	exon	5126936	5127007	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	intron	5127008	5127120	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	CDS	5127121	5127236	0.99	+	2	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	exon	5127121	5127236	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	intron	5127237	5127387	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	CDS	5127388	5127464	1	+	0	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	exon	5127388	5127464	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	intron	5127465	5127655	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	CDS	5127656	5127927	0.99	+	1	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	exon	5127656	5127927	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	intron	5127928	5128020	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	CDS	5128021	5128141	0.99	+	2	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	exon	5128021	5128141	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	intron	5128142	5128250	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	CDS	5128251	5128566	1	+	1	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	exon	5128251	5128566	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	intron	5128567	5128646	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	CDS	5128647	5128790	0.94	+	0	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	exon	5128647	5128790	.	+	.	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
Ledus.S5	AUGUSTUS	stop_codon	5128791	5128793	.	+	0	transcript_id "Ledus.S5G045200.t1"; gene_id "Ledus.S5G045200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg933.t1 is derived from g7794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6219189	6221961	.	+	.	Ledus.S2G081500
Ledus.S2	AUGUSTUS	transcript	6219189	6221961	.	+	.	transcript_id "Ledus.S2G081500.t1"; gene_id "Ledus.S2G081500"
Ledus.S2	AUGUSTUS	start_codon	6219189	6219191	.	+	0	transcript_id "Ledus.S2G081500.t1"; gene_id "Ledus.S2G081500"
Ledus.S2	AUGUSTUS	CDS	6219189	6221499	0.99	+	0	transcript_id "Ledus.S2G081500.t1"; gene_id "Ledus.S2G081500"
Ledus.S2	AUGUSTUS	exon	6219189	6221499	.	+	.	transcript_id "Ledus.S2G081500.t1"; gene_id "Ledus.S2G081500"
Ledus.S2	AUGUSTUS	intron	6221500	6221584	.	+	.	transcript_id "Ledus.S2G081500.t1"; gene_id "Ledus.S2G081500"
Ledus.S2	AUGUSTUS	CDS	6221585	6221961	0.99	+	2	transcript_id "Ledus.S2G081500.t1"; gene_id "Ledus.S2G081500"
Ledus.S2	AUGUSTUS	exon	6221585	6221961	.	+	.	transcript_id "Ledus.S2G081500.t1"; gene_id "Ledus.S2G081500"
Ledus.S2	AUGUSTUS	stop_codon	6221962	6221964	.	+	0	transcript_id "Ledus.S2G081500.t1"; gene_id "Ledus.S2G081500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2187.t1 is derived from g9050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15826761	15827519	.	+	.	Ledus.S2G206900
Ledus.S2	AUGUSTUS	transcript	15826761	15827519	.	+	.	transcript_id "Ledus.S2G206900.t1"; gene_id "Ledus.S2G206900"
Ledus.S2	AUGUSTUS	start_codon	15826761	15826763	.	+	0	transcript_id "Ledus.S2G206900.t1"; gene_id "Ledus.S2G206900"
Ledus.S2	AUGUSTUS	CDS	15826761	15826851	0.26	+	0	transcript_id "Ledus.S2G206900.t1"; gene_id "Ledus.S2G206900"
Ledus.S2	AUGUSTUS	exon	15826761	15826851	.	+	.	transcript_id "Ledus.S2G206900.t1"; gene_id "Ledus.S2G206900"
Ledus.S2	AUGUSTUS	intron	15826852	15827211	.	+	.	transcript_id "Ledus.S2G206900.t1"; gene_id "Ledus.S2G206900"
Ledus.S2	AUGUSTUS	CDS	15827212	15827279	1	+	2	transcript_id "Ledus.S2G206900.t1"; gene_id "Ledus.S2G206900"
Ledus.S2	AUGUSTUS	exon	15827212	15827279	.	+	.	transcript_id "Ledus.S2G206900.t1"; gene_id "Ledus.S2G206900"
Ledus.S2	AUGUSTUS	intron	15827280	15827378	.	+	.	transcript_id "Ledus.S2G206900.t1"; gene_id "Ledus.S2G206900"
Ledus.S2	AUGUSTUS	CDS	15827379	15827519	0.99	+	0	transcript_id "Ledus.S2G206900.t1"; gene_id "Ledus.S2G206900"
Ledus.S2	AUGUSTUS	exon	15827379	15827519	.	+	.	transcript_id "Ledus.S2G206900.t1"; gene_id "Ledus.S2G206900"
Ledus.S2	AUGUSTUS	stop_codon	15827520	15827522	.	+	0	transcript_id "Ledus.S2G206900.t1"; gene_id "Ledus.S2G206900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11070.t1 is derived from g4688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1600571	1603713	.	+	.	Ledus.S4G022600
Ledus.S4	AUGUSTUS	transcript	1600571	1603713	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	start_codon	1600571	1600573	.	+	0	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	CDS	1600571	1601119	1	+	0	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	exon	1600571	1601119	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	intron	1601120	1601223	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	CDS	1601224	1601526	1	+	0	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	exon	1601224	1601526	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	intron	1601527	1601615	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	CDS	1601616	1601944	0.56	+	0	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	exon	1601616	1601944	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	intron	1601945	1602056	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	CDS	1602057	1602216	0.84	+	1	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	exon	1602057	1602216	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	intron	1602217	1602304	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	CDS	1602305	1602880	0.96	+	0	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	exon	1602305	1602880	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	intron	1602881	1602982	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	CDS	1602983	1603267	0.94	+	0	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	exon	1602983	1603267	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	intron	1603268	1603350	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	CDS	1603351	1603713	0.99	+	0	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	exon	1603351	1603713	.	+	.	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
Ledus.S4	AUGUSTUS	stop_codon	1603714	1603716	.	+	0	transcript_id "Ledus.S4G022600.t1"; gene_id "Ledus.S4G022600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1823.t1 is derived from g8686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12794259	12794468	.	+	.	Ledus.S2G170500
Ledus.S2	AUGUSTUS	transcript	12794259	12794468	.	+	.	transcript_id "Ledus.S2G170500.t1"; gene_id "Ledus.S2G170500"
Ledus.S2	AUGUSTUS	start_codon	12794259	12794261	.	+	0	transcript_id "Ledus.S2G170500.t1"; gene_id "Ledus.S2G170500"
Ledus.S2	AUGUSTUS	CDS	12794259	12794468	0.97	+	0	transcript_id "Ledus.S2G170500.t1"; gene_id "Ledus.S2G170500"
Ledus.S2	AUGUSTUS	exon	12794259	12794468	.	+	.	transcript_id "Ledus.S2G170500.t1"; gene_id "Ledus.S2G170500"
Ledus.S2	AUGUSTUS	stop_codon	12794469	12794471	.	+	0	transcript_id "Ledus.S2G170500.t1"; gene_id "Ledus.S2G170500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3586.t1 is derived from g1022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9822473	9822910	.	-	.	Ledus.S1G100700
Ledus.S1	AUGUSTUS	transcript	9822473	9822910	.	-	.	transcript_id "Ledus.S1G100700.t1"; gene_id "Ledus.S1G100700"
Ledus.S1	AUGUSTUS	stop_codon	9822470	9822472	.	-	0	transcript_id "Ledus.S1G100700.t1"; gene_id "Ledus.S1G100700"
Ledus.S1	AUGUSTUS	CDS	9822473	9822650	0.53	-	1	transcript_id "Ledus.S1G100700.t1"; gene_id "Ledus.S1G100700"
Ledus.S1	AUGUSTUS	exon	9822473	9822650	.	-	.	transcript_id "Ledus.S1G100700.t1"; gene_id "Ledus.S1G100700"
Ledus.S1	AUGUSTUS	intron	9822651	9822809	.	-	.	transcript_id "Ledus.S1G100700.t1"; gene_id "Ledus.S1G100700"
Ledus.S1	AUGUSTUS	CDS	9822810	9822910	0.87	-	0	transcript_id "Ledus.S1G100700.t1"; gene_id "Ledus.S1G100700"
Ledus.S1	AUGUSTUS	exon	9822810	9822910	.	-	.	transcript_id "Ledus.S1G100700.t1"; gene_id "Ledus.S1G100700"
Ledus.S1	AUGUSTUS	start_codon	9822908	9822910	.	-	0	transcript_id "Ledus.S1G100700.t1"; gene_id "Ledus.S1G100700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13022.t1 is derived from g6832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3306605	3306880	.	-	.	Ledus.S6G008400
Ledus.S6	AUGUSTUS	transcript	3306605	3306880	.	-	.	transcript_id "Ledus.S6G008400.t1"; gene_id "Ledus.S6G008400"
Ledus.S6	AUGUSTUS	stop_codon	3306602	3306604	.	-	0	transcript_id "Ledus.S6G008400.t1"; gene_id "Ledus.S6G008400"
Ledus.S6	AUGUSTUS	CDS	3306605	3306880	0.66	-	0	transcript_id "Ledus.S6G008400.t1"; gene_id "Ledus.S6G008400"
Ledus.S6	AUGUSTUS	exon	3306605	3306880	.	-	.	transcript_id "Ledus.S6G008400.t1"; gene_id "Ledus.S6G008400"
Ledus.S6	AUGUSTUS	start_codon	3306878	3306880	.	-	0	transcript_id "Ledus.S6G008400.t1"; gene_id "Ledus.S6G008400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg286.t1 is derived from g7147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1401380	1404393	.	-	.	Ledus.S2G016800
Ledus.S2	AUGUSTUS	transcript	1401380	1404393	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	stop_codon	1401377	1401379	.	-	0	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	CDS	1401380	1401478	0.32	-	0	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	exon	1401380	1401478	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	intron	1401479	1401670	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	CDS	1401671	1401727	0.29	-	0	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	exon	1401671	1401727	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	intron	1401728	1401834	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	CDS	1401835	1401993	0.22	-	0	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	exon	1401835	1401993	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	intron	1401994	1402073	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	CDS	1402074	1402104	0.3	-	1	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	exon	1402074	1402104	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	intron	1402105	1402219	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	CDS	1402220	1402236	0.61	-	0	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	exon	1402220	1402236	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	intron	1402237	1402424	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	CDS	1402425	1403614	0.93	-	2	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	exon	1402425	1403614	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	intron	1403615	1403712	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	CDS	1403713	1403937	1	-	2	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	exon	1403713	1403937	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	intron	1403938	1404086	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	CDS	1404087	1404393	0.79	-	0	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	exon	1404087	1404393	.	-	.	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
Ledus.S2	AUGUSTUS	start_codon	1404391	1404393	.	-	0	transcript_id "Ledus.S2G016800.t1"; gene_id "Ledus.S2G016800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12624.t1 is derived from g6246.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13348453	13351938	.	-	.	Ledus.S4G178000
Ledus.S4	AUGUSTUS	transcript	13348453	13351938	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	stop_codon	13348450	13348452	.	-	0	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13348453	13348548	0.98	-	0	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13348453	13348548	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13348549	13348652	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13348653	13348775	0.98	-	0	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13348653	13348775	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13348776	13348886	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13348887	13349028	1	-	1	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13348887	13349028	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13349029	13349148	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13349149	13349246	1	-	0	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13349149	13349246	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13349247	13349353	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13349354	13349450	1	-	1	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13349354	13349450	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13349451	13349589	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13349590	13349697	1	-	1	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13349590	13349697	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13349698	13349837	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13349838	13349941	1	-	0	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13349838	13349941	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13349942	13350027	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13350028	13350204	1	-	0	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13350028	13350204	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13350205	13350301	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13350302	13350364	1	-	0	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13350302	13350364	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13350365	13350530	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13350531	13350677	0.99	-	0	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13350531	13350677	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13350678	13350864	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13350865	13350986	0.54	-	2	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13350865	13350986	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13350987	13351057	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13351058	13351202	0.61	-	0	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13351058	13351202	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13351203	13351445	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13351446	13351513	1	-	2	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13351446	13351513	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	intron	13351514	13351895	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	CDS	13351896	13351938	0.72	-	0	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	exon	13351896	13351938	.	-	.	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
Ledus.S4	AUGUSTUS	start_codon	13351936	13351938	.	-	0	transcript_id "Ledus.S4G178000.t1"; gene_id "Ledus.S4G178000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg6554.t1 is derived from g3997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32273659	32276997	.	-	.	Ledus.S1G397500
Ledus.S1	AUGUSTUS	transcript	32273659	32276656	.	-	.	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	stop_codon	32273656	32273658	.	-	0	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32273659	32273783	0.51	-	2	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32273659	32273783	.	-	.	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32273784	32273939	.	-	.	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32273940	32276145	0.61	-	0	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32273940	32276145	.	-	.	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32276146	32276223	.	-	.	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32276224	32276318	1	-	2	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32276224	32276318	.	-	.	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32276319	32276400	.	-	.	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32276401	32276488	1	-	0	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32276401	32276488	.	-	.	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32276489	32276587	.	-	.	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32276588	32276656	1	-	0	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32276588	32276656	.	-	.	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	start_codon	32276654	32276656	.	-	0	transcript_id "Ledus.S1G397500.t1"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	transcript	32273659	32276656	.	-	.	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	stop_codon	32273656	32273658	.	-	0	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32273659	32273783	0.48	-	2	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32273659	32273783	.	-	.	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32273784	32273939	.	-	.	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32273940	32276145	0.53	-	0	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32273940	32276145	.	-	.	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32276146	32276223	.	-	.	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32276224	32276306	1	-	2	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32276224	32276306	.	-	.	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32276307	32276400	.	-	.	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32276401	32276488	1	-	0	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32276401	32276488	.	-	.	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32276489	32276587	.	-	.	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32276588	32276656	1	-	0	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32276588	32276656	.	-	.	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	start_codon	32276654	32276656	.	-	0	transcript_id "Ledus.S1G397500.t2"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	transcript	32273659	32276997	.	-	.	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	stop_codon	32273656	32273658	.	-	0	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32273659	32273783	0.4	-	2	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32273659	32273783	.	-	.	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32273784	32273939	.	-	.	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32273940	32276145	0.34	-	0	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32273940	32276145	.	-	.	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32276146	32276223	.	-	.	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32276224	32276318	0.69	-	2	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32276224	32276318	.	-	.	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32276319	32276400	.	-	.	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32276401	32276501	0.27	-	1	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32276401	32276501	.	-	.	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32276502	32276587	.	-	.	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32276588	32276623	0.21	-	1	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32276588	32276623	.	-	.	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	intron	32276624	32276971	.	-	.	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	CDS	32276972	32276997	0.2	-	0	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	exon	32276972	32276997	.	-	.	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
Ledus.S1	AUGUSTUS	start_codon	32276995	32276997	.	-	0	transcript_id "Ledus.S1G397500.t3"; gene_id "Ledus.S1G397500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg625.t1 is derived from g7486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3757923	3769320	.	+	.	Ledus.S2G050700
Ledus.S2	AUGUSTUS	transcript	3757923	3769320	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	start_codon	3757923	3757925	.	+	0	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3757923	3757995	0.94	+	0	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3757923	3757995	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3757996	3758256	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3758257	3758841	0.57	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3758257	3758841	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3758842	3759222	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3759223	3759573	0.86	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3759223	3759573	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3759574	3759705	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3759706	3760035	0.99	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3759706	3760035	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3760036	3760135	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3760136	3760179	0.35	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3760136	3760179	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3760180	3760296	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3760297	3760492	0.48	+	0	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3760297	3760492	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3760493	3760730	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3760731	3760958	1	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3760731	3760958	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3760959	3761214	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3761215	3761331	0.89	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3761215	3761331	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3761332	3761446	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3761447	3761809	0.89	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3761447	3761809	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3761810	3761914	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3761915	3762253	1	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3761915	3762253	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3762254	3762421	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3762422	3762784	0.93	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3762422	3762784	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3762785	3762998	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3762999	3763355	0.58	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3762999	3763355	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3763356	3763523	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3763524	3763571	0.98	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3763524	3763571	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3763572	3763680	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3763681	3763977	0.37	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3763681	3763977	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3763978	3764149	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3764150	3764500	0.58	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3764150	3764500	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3764501	3764680	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3764681	3765016	0.99	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3764681	3765016	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3765017	3765164	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3765165	3765476	1	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3765165	3765476	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3765477	3765559	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3765560	3766153	0.97	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3765560	3766153	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3766154	3766313	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3766314	3766634	1	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3766314	3766634	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3766635	3766767	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3766768	3766912	1	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3766768	3766912	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3766913	3767143	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3767144	3767404	0.99	+	1	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3767144	3767404	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3767405	3767640	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3767641	3767861	0.98	+	1	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3767641	3767861	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3767862	3767967	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3767968	3768206	0.93	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3767968	3768206	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3768207	3768303	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3768304	3768454	1	+	0	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3768304	3768454	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3768455	3768639	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3768640	3768827	1	+	2	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3768640	3768827	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3768828	3768920	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3768921	3769022	1	+	0	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3768921	3769022	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	intron	3769023	3769113	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	CDS	3769114	3769320	0.99	+	0	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	exon	3769114	3769320	.	+	.	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
Ledus.S2	AUGUSTUS	stop_codon	3769321	3769323	.	+	0	transcript_id "Ledus.S2G050700.t1"; gene_id "Ledus.S2G050700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3486.t1 is derived from g921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8677627	8682565	.	-	.	Ledus.S1G090700
Ledus.S1	AUGUSTUS	transcript	8677627	8682565	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	stop_codon	8677624	8677626	.	-	0	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8677627	8678802	0.9	-	0	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8677627	8678802	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8678803	8678961	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8678962	8679072	1	-	0	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8678962	8679072	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8679073	8679216	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8679217	8679384	1	-	0	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8679217	8679384	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8679385	8679473	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8679474	8679675	0.68	-	1	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8679474	8679675	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8679676	8679753	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8679754	8679846	0.68	-	1	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8679754	8679846	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8679847	8679990	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8679991	8680651	0.99	-	2	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8679991	8680651	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8680652	8680781	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8680782	8680890	1	-	0	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8680782	8680890	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8680891	8681016	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8681017	8681088	1	-	0	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8681017	8681088	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8681089	8681231	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8681232	8681324	1	-	0	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8681232	8681324	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8681325	8681407	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8681408	8681459	0.99	-	1	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8681408	8681459	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8681460	8681580	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8681581	8681627	0.99	-	0	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8681581	8681627	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8681628	8681731	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8681732	8681797	0.95	-	0	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8681732	8681797	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8681798	8681893	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8681894	8681953	0.73	-	0	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8681894	8681953	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8681954	8682079	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8682080	8682141	0.4	-	2	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8682080	8682141	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	intron	8682142	8682525	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	CDS	8682526	8682565	0.85	-	0	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	exon	8682526	8682565	.	-	.	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
Ledus.S1	AUGUSTUS	start_codon	8682563	8682565	.	-	0	transcript_id "Ledus.S1G090700.t1"; gene_id "Ledus.S1G090700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1594.t1 is derived from g8455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11181486	11183098	.	+	.	Ledus.S2G147600
Ledus.S2	AUGUSTUS	transcript	11181486	11183098	.	+	.	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	start_codon	11181486	11181488	.	+	0	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	CDS	11181486	11181562	0.13	+	0	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	exon	11181486	11181562	.	+	.	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	intron	11181563	11181898	.	+	.	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	CDS	11181899	11182023	0.43	+	1	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	exon	11181899	11182023	.	+	.	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	intron	11182024	11182087	.	+	.	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	CDS	11182088	11182151	0.39	+	2	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	exon	11182088	11182151	.	+	.	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	intron	11182152	11182233	.	+	.	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	CDS	11182234	11183098	0.91	+	1	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	exon	11182234	11183098	.	+	.	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
Ledus.S2	AUGUSTUS	stop_codon	11183099	11183101	.	+	0	transcript_id "Ledus.S2G147600.t1"; gene_id "Ledus.S2G147600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2037.t1 is derived from g8900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14277813	14279823	.	-	.	Ledus.S2G191900
Ledus.S2	AUGUSTUS	transcript	14277813	14279823	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	stop_codon	14277810	14277812	.	-	0	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	CDS	14277813	14278133	0.58	-	0	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	exon	14277813	14278133	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	intron	14278134	14278225	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	CDS	14278226	14278293	1	-	2	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	exon	14278226	14278293	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	intron	14278294	14278462	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	CDS	14278463	14278721	1	-	0	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	exon	14278463	14278721	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	intron	14278722	14278854	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	CDS	14278855	14279065	0.71	-	1	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	exon	14278855	14279065	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	intron	14279066	14279148	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	CDS	14279149	14279196	0.29	-	1	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	exon	14279149	14279196	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	intron	14279197	14279337	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	CDS	14279338	14279459	0.34	-	0	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	exon	14279338	14279459	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	intron	14279460	14279540	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	CDS	14279541	14279638	0.36	-	2	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	exon	14279541	14279638	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	intron	14279639	14279789	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	CDS	14279790	14279823	0.44	-	0	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	exon	14279790	14279823	.	-	.	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
Ledus.S2	AUGUSTUS	start_codon	14279821	14279823	.	-	0	transcript_id "Ledus.S2G191900.t1"; gene_id "Ledus.S2G191900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg432.t1 is derived from g7293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2488556	2490375	.	-	.	Ledus.S2G031400
Ledus.S2	AUGUSTUS	transcript	2488556	2490375	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	stop_codon	2488553	2488555	.	-	0	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	CDS	2488556	2488584	0.75	-	2	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	exon	2488556	2488584	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	intron	2488585	2488815	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	CDS	2488816	2488830	1	-	2	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	exon	2488816	2488830	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	intron	2488831	2488903	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	CDS	2488904	2488947	0.95	-	1	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	exon	2488904	2488947	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	intron	2488948	2489123	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	CDS	2489124	2489443	1	-	0	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	exon	2489124	2489443	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	intron	2489444	2489617	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	CDS	2489618	2489972	1	-	1	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	exon	2489618	2489972	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	intron	2489973	2490185	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	CDS	2490186	2490234	1	-	2	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	exon	2490186	2490234	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	intron	2490235	2490320	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	CDS	2490321	2490375	1	-	0	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	exon	2490321	2490375	.	-	.	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
Ledus.S2	AUGUSTUS	start_codon	2490373	2490375	.	-	0	transcript_id "Ledus.S2G031400.t1"; gene_id "Ledus.S2G031400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3247.t1 is derived from g682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7098998	7102082	.	-	.	Ledus.S1G066800
Ledus.S1	AUGUSTUS	transcript	7098998	7102082	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	stop_codon	7098995	7098997	.	-	0	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	CDS	7098998	7099096	0.57	-	0	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	exon	7098998	7099096	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	intron	7099097	7099211	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	CDS	7099212	7099769	0.63	-	0	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	exon	7099212	7099769	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	intron	7099770	7099867	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	CDS	7099868	7100719	0.77	-	0	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	exon	7099868	7100719	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	intron	7100720	7100879	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	CDS	7100880	7101107	0.41	-	0	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	exon	7100880	7101107	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	intron	7101108	7101261	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	CDS	7101262	7101320	0.36	-	2	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	exon	7101262	7101320	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	intron	7101321	7101434	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	CDS	7101435	7101454	0.4	-	1	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	exon	7101435	7101454	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	intron	7101455	7101601	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	CDS	7101602	7101695	0.86	-	2	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	exon	7101602	7101695	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	intron	7101696	7101940	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	CDS	7101941	7102082	0.28	-	0	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	exon	7101941	7102082	.	-	.	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
Ledus.S1	AUGUSTUS	start_codon	7102080	7102082	.	-	0	transcript_id "Ledus.S1G066800.t1"; gene_id "Ledus.S1G066800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7623.t1 is derived from g12294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4419597	4422096	.	+	.	Ledus.S5G040100
Ledus.S5	AUGUSTUS	transcript	4419597	4422096	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	start_codon	4419597	4419599	.	+	0	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	CDS	4419597	4419722	0.87	+	0	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	exon	4419597	4419722	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	intron	4419723	4419808	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	CDS	4419809	4419999	0.88	+	0	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	exon	4419809	4419999	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	intron	4420000	4420076	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	CDS	4420077	4420329	0.99	+	1	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	exon	4420077	4420329	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	intron	4420330	4420420	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	CDS	4420421	4420808	1	+	0	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	exon	4420421	4420808	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	intron	4420809	4420927	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	CDS	4420928	4421062	0.62	+	2	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	exon	4420928	4421062	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	intron	4421063	4421158	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	CDS	4421159	4421315	1	+	2	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	exon	4421159	4421315	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	intron	4421316	4421396	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	CDS	4421397	4421727	1	+	1	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	exon	4421397	4421727	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	intron	4421728	4421814	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	CDS	4421815	4422096	0.62	+	0	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	exon	4421815	4422096	.	+	.	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
Ledus.S5	AUGUSTUS	stop_codon	4422097	4422099	.	+	0	transcript_id "Ledus.S5G040100.t1"; gene_id "Ledus.S5G040100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg271.t1 is derived from g7132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1310017	1311937	.	+	.	Ledus.S2G015300
Ledus.S2	AUGUSTUS	transcript	1310017	1311937	.	+	.	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	start_codon	1310017	1310019	.	+	0	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	CDS	1310017	1310197	0.35	+	0	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	exon	1310017	1310197	.	+	.	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	intron	1310198	1310278	.	+	.	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	CDS	1310279	1310769	1	+	2	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	exon	1310279	1310769	.	+	.	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	intron	1310770	1310893	.	+	.	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	CDS	1310894	1311481	0.93	+	0	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	exon	1310894	1311481	.	+	.	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	intron	1311482	1311565	.	+	.	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	CDS	1311566	1311937	0.87	+	0	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	exon	1311566	1311937	.	+	.	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
Ledus.S2	AUGUSTUS	stop_codon	1311938	1311940	.	+	0	transcript_id "Ledus.S2G015300.t1"; gene_id "Ledus.S2G015300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg194.t1 is derived from g7055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	732098	733228	.	-	.	Ledus.S2G007600
Ledus.S2	AUGUSTUS	transcript	732098	733228	.	-	.	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	stop_codon	732095	732097	.	-	0	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	CDS	732098	732180	1	-	2	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	exon	732098	732180	.	-	.	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	intron	732181	732263	.	-	.	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	CDS	732264	732480	1	-	0	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	exon	732264	732480	.	-	.	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	intron	732481	732581	.	-	.	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	CDS	732582	732679	1	-	2	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	exon	732582	732679	.	-	.	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	intron	732680	732744	.	-	.	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	CDS	732745	733228	0.62	-	0	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	exon	732745	733228	.	-	.	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
Ledus.S2	AUGUSTUS	start_codon	733226	733228	.	-	0	transcript_id "Ledus.S2G007600.t1"; gene_id "Ledus.S2G007600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6392.t1 is derived from g3835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30977562	30981913	.	+	.	Ledus.S1G381300
Ledus.S1	AUGUSTUS	transcript	30977562	30981913	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	start_codon	30977562	30977564	.	+	0	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	CDS	30977562	30977673	0.94	+	0	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	exon	30977562	30977673	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	intron	30977674	30977849	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	CDS	30977850	30977920	1	+	2	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	exon	30977850	30977920	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	intron	30977921	30977998	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	CDS	30977999	30978053	0.9	+	0	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	exon	30977999	30978053	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	intron	30978054	30978153	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	CDS	30978154	30978285	1	+	2	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	exon	30978154	30978285	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	intron	30978286	30978686	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	CDS	30978687	30980053	1	+	2	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	exon	30978687	30980053	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	intron	30980054	30980211	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	CDS	30980212	30980326	1	+	0	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	exon	30980212	30980326	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	intron	30980327	30980416	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	CDS	30980417	30980492	1	+	2	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	exon	30980417	30980492	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	intron	30980493	30980583	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	CDS	30980584	30980615	1	+	1	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	exon	30980584	30980615	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	intron	30980616	30980870	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	CDS	30980871	30981274	1	+	2	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	exon	30980871	30981274	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	intron	30981275	30981403	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	CDS	30981404	30981913	0.93	+	0	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	exon	30981404	30981913	.	+	.	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
Ledus.S1	AUGUSTUS	stop_codon	30981914	30981916	.	+	0	transcript_id "Ledus.S1G381300.t1"; gene_id "Ledus.S1G381300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11201.t1 is derived from g4819.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2692864	2695898	.	+	.	Ledus.S4G035700
Ledus.S4	AUGUSTUS	transcript	2692864	2695898	.	+	.	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	start_codon	2692864	2692866	.	+	0	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	CDS	2692864	2693850	0.75	+	0	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	exon	2692864	2693850	.	+	.	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	intron	2693851	2693937	.	+	.	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	CDS	2693938	2694187	1	+	0	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	exon	2693938	2694187	.	+	.	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	intron	2694188	2694276	.	+	.	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	CDS	2694277	2695271	1	+	2	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	exon	2694277	2695271	.	+	.	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	intron	2695272	2695346	.	+	.	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	CDS	2695347	2695898	1	+	0	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	exon	2695347	2695898	.	+	.	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
Ledus.S4	AUGUSTUS	stop_codon	2695899	2695901	.	+	0	transcript_id "Ledus.S4G035700.t1"; gene_id "Ledus.S4G035700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11797.t1 is derived from g5416.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6831577	6831894	.	-	.	Ledus.S4G095300
Ledus.S4	AUGUSTUS	transcript	6831577	6831894	.	-	.	transcript_id "Ledus.S4G095300.t1"; gene_id "Ledus.S4G095300"
Ledus.S4	AUGUSTUS	stop_codon	6831574	6831576	.	-	0	transcript_id "Ledus.S4G095300.t1"; gene_id "Ledus.S4G095300"
Ledus.S4	AUGUSTUS	CDS	6831577	6831894	0.46	-	0	transcript_id "Ledus.S4G095300.t1"; gene_id "Ledus.S4G095300"
Ledus.S4	AUGUSTUS	exon	6831577	6831894	.	-	.	transcript_id "Ledus.S4G095300.t1"; gene_id "Ledus.S4G095300"
Ledus.S4	AUGUSTUS	start_codon	6831892	6831894	.	-	0	transcript_id "Ledus.S4G095300.t1"; gene_id "Ledus.S4G095300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10501.t1 is derived from g11531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15642677	15643837	.	-	.	Ledus.S3G197800
Ledus.S3	AUGUSTUS	transcript	15642677	15643837	.	-	.	transcript_id "Ledus.S3G197800.t1"; gene_id "Ledus.S3G197800"
Ledus.S3	AUGUSTUS	stop_codon	15642674	15642676	.	-	0	transcript_id "Ledus.S3G197800.t1"; gene_id "Ledus.S3G197800"
Ledus.S3	AUGUSTUS	CDS	15642677	15642723	0.75	-	2	transcript_id "Ledus.S3G197800.t1"; gene_id "Ledus.S3G197800"
Ledus.S3	AUGUSTUS	exon	15642677	15642723	.	-	.	transcript_id "Ledus.S3G197800.t1"; gene_id "Ledus.S3G197800"
Ledus.S3	AUGUSTUS	intron	15642724	15643120	.	-	.	transcript_id "Ledus.S3G197800.t1"; gene_id "Ledus.S3G197800"
Ledus.S3	AUGUSTUS	CDS	15643121	15643148	0.86	-	0	transcript_id "Ledus.S3G197800.t1"; gene_id "Ledus.S3G197800"
Ledus.S3	AUGUSTUS	exon	15643121	15643148	.	-	.	transcript_id "Ledus.S3G197800.t1"; gene_id "Ledus.S3G197800"
Ledus.S3	AUGUSTUS	intron	15643149	15643261	.	-	.	transcript_id "Ledus.S3G197800.t1"; gene_id "Ledus.S3G197800"
Ledus.S3	AUGUSTUS	CDS	15643262	15643837	0.59	-	0	transcript_id "Ledus.S3G197800.t1"; gene_id "Ledus.S3G197800"
Ledus.S3	AUGUSTUS	exon	15643262	15643837	.	-	.	transcript_id "Ledus.S3G197800.t1"; gene_id "Ledus.S3G197800"
Ledus.S3	AUGUSTUS	start_codon	15643835	15643837	.	-	0	transcript_id "Ledus.S3G197800.t1"; gene_id "Ledus.S3G197800"
# This transcript jg699.t2 is derived from g7560.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg700.t1 is derived from g7561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4297255	4298852	.	-	.	Ledus.S2G058200
Ledus.S2	AUGUSTUS	transcript	4297255	4298852	.	-	.	transcript_id "Ledus.S2G058200.t1"; gene_id "Ledus.S2G058200"
Ledus.S2	AUGUSTUS	stop_codon	4297252	4297254	.	-	0	transcript_id "Ledus.S2G058200.t1"; gene_id "Ledus.S2G058200"
Ledus.S2	AUGUSTUS	CDS	4297255	4297959	0.52	-	0	transcript_id "Ledus.S2G058200.t1"; gene_id "Ledus.S2G058200"
Ledus.S2	AUGUSTUS	exon	4297255	4297959	.	-	.	transcript_id "Ledus.S2G058200.t1"; gene_id "Ledus.S2G058200"
Ledus.S2	AUGUSTUS	intron	4297960	4298104	.	-	.	transcript_id "Ledus.S2G058200.t1"; gene_id "Ledus.S2G058200"
Ledus.S2	AUGUSTUS	CDS	4298105	4298569	0.51	-	0	transcript_id "Ledus.S2G058200.t1"; gene_id "Ledus.S2G058200"
Ledus.S2	AUGUSTUS	exon	4298105	4298569	.	-	.	transcript_id "Ledus.S2G058200.t1"; gene_id "Ledus.S2G058200"
Ledus.S2	AUGUSTUS	intron	4298570	4298693	.	-	.	transcript_id "Ledus.S2G058200.t1"; gene_id "Ledus.S2G058200"
Ledus.S2	AUGUSTUS	CDS	4298694	4298852	0.84	-	0	transcript_id "Ledus.S2G058200.t1"; gene_id "Ledus.S2G058200"
Ledus.S2	AUGUSTUS	exon	4298694	4298852	.	-	.	transcript_id "Ledus.S2G058200.t1"; gene_id "Ledus.S2G058200"
Ledus.S2	AUGUSTUS	start_codon	4298850	4298852	.	-	0	transcript_id "Ledus.S2G058200.t1"; gene_id "Ledus.S2G058200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6287.t1 is derived from g3730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30140684	30145602	.	+	.	Ledus.S1G370800
Ledus.S1	AUGUSTUS	transcript	30140684	30145602	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	start_codon	30140684	30140686	.	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30140684	30140767	0.5	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30140684	30140767	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30140768	30140908	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30140909	30140971	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30140909	30140971	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30140972	30141063	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30141064	30141276	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30141064	30141276	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30141277	30141369	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30141370	30141678	0.96	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30141370	30141678	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30141679	30141811	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30141812	30141904	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30141812	30141904	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30141905	30142036	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30142037	30142135	0.95	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30142037	30142135	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30142136	30142241	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30142242	30142271	0.99	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30142242	30142271	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30142272	30142404	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30142405	30142458	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30142405	30142458	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30142459	30142540	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30142541	30142594	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30142541	30142594	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30142595	30142677	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30142678	30142755	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30142678	30142755	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30142756	30142845	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30142846	30142937	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30142846	30142937	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30142938	30143057	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30143058	30143115	1	+	1	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30143058	30143115	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30143116	30143264	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30143265	30143339	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30143265	30143339	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30143340	30143486	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30143487	30143534	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30143487	30143534	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30143535	30143686	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30143687	30143784	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30143687	30143784	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30143785	30143899	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30143900	30143975	0.88	+	1	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30143900	30143975	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30143976	30144063	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30144064	30144126	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30144064	30144126	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30144127	30144251	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30144252	30144343	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30144252	30144343	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30144344	30144410	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30144411	30144479	1	+	1	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30144411	30144479	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30144480	30144551	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30144552	30144615	0.98	+	1	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30144552	30144615	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30144616	30144722	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30144723	30144788	1	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30144723	30144788	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30144789	30144873	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30144874	30144983	0.98	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30144874	30144983	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30144984	30145170	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30145171	30145223	0.32	+	1	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30145171	30145223	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	intron	30145224	30145387	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	CDS	30145388	30145602	0.57	+	2	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	exon	30145388	30145602	.	+	.	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
Ledus.S1	AUGUSTUS	stop_codon	30145603	30145605	.	+	0	transcript_id "Ledus.S1G370800.t1"; gene_id "Ledus.S1G370800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7117.t1 is derived from g6648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1657582	1659405	.	+	.	Ledus.C7G017800
Ledus.C7	AUGUSTUS	transcript	1657582	1659405	.	+	.	transcript_id "Ledus.C7G017800.t1"; gene_id "Ledus.C7G017800"
Ledus.C7	AUGUSTUS	start_codon	1657582	1657584	.	+	0	transcript_id "Ledus.C7G017800.t1"; gene_id "Ledus.C7G017800"
Ledus.C7	AUGUSTUS	CDS	1657582	1659405	1	+	0	transcript_id "Ledus.C7G017800.t1"; gene_id "Ledus.C7G017800"
Ledus.C7	AUGUSTUS	exon	1657582	1659405	.	+	.	transcript_id "Ledus.C7G017800.t1"; gene_id "Ledus.C7G017800"
Ledus.C7	AUGUSTUS	stop_codon	1659406	1659408	.	+	0	transcript_id "Ledus.C7G017800.t1"; gene_id "Ledus.C7G017800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4169.t1 is derived from g1605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15094535	15097790	.	+	.	Ledus.S1G159000
Ledus.S1	AUGUSTUS	transcript	15094535	15097790	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	start_codon	15094535	15094537	.	+	0	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	CDS	15094535	15094807	1	+	0	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	exon	15094535	15094807	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	intron	15094808	15094893	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	CDS	15094894	15094936	1	+	0	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	exon	15094894	15094936	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	intron	15094937	15095021	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	CDS	15095022	15095182	1	+	2	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	exon	15095022	15095182	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	intron	15095183	15095256	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	CDS	15095257	15095461	0.98	+	0	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	exon	15095257	15095461	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	intron	15095462	15095550	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	CDS	15095551	15095745	1	+	2	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	exon	15095551	15095745	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	intron	15095746	15095950	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	CDS	15095951	15096003	1	+	2	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	exon	15095951	15096003	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	intron	15096004	15096096	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	CDS	15096097	15096157	1	+	0	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	exon	15096097	15096157	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	intron	15096158	15096276	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	CDS	15096277	15096338	1	+	2	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	exon	15096277	15096338	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	intron	15096339	15096756	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	CDS	15096757	15096801	1	+	0	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	exon	15096757	15096801	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	intron	15096802	15096921	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	CDS	15096922	15096990	1	+	0	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	exon	15096922	15096990	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	intron	15096991	15097166	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	CDS	15097167	15097790	1	+	0	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	exon	15097167	15097790	.	+	.	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
Ledus.S1	AUGUSTUS	stop_codon	15097791	15097793	.	+	0	transcript_id "Ledus.S1G159000.t1"; gene_id "Ledus.S1G159000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6739.t1 is derived from g4182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33666377	33667860	.	+	.	Ledus.S1G416000
Ledus.S1	AUGUSTUS	transcript	33666377	33667860	.	+	.	transcript_id "Ledus.S1G416000.t1"; gene_id "Ledus.S1G416000"
Ledus.S1	AUGUSTUS	start_codon	33666377	33666379	.	+	0	transcript_id "Ledus.S1G416000.t1"; gene_id "Ledus.S1G416000"
Ledus.S1	AUGUSTUS	CDS	33666377	33666886	0.22	+	0	transcript_id "Ledus.S1G416000.t1"; gene_id "Ledus.S1G416000"
Ledus.S1	AUGUSTUS	exon	33666377	33666886	.	+	.	transcript_id "Ledus.S1G416000.t1"; gene_id "Ledus.S1G416000"
Ledus.S1	AUGUSTUS	intron	33666887	33666971	.	+	.	transcript_id "Ledus.S1G416000.t1"; gene_id "Ledus.S1G416000"
Ledus.S1	AUGUSTUS	CDS	33666972	33667244	1	+	0	transcript_id "Ledus.S1G416000.t1"; gene_id "Ledus.S1G416000"
Ledus.S1	AUGUSTUS	exon	33666972	33667244	.	+	.	transcript_id "Ledus.S1G416000.t1"; gene_id "Ledus.S1G416000"
Ledus.S1	AUGUSTUS	intron	33667245	33667326	.	+	.	transcript_id "Ledus.S1G416000.t1"; gene_id "Ledus.S1G416000"
Ledus.S1	AUGUSTUS	CDS	33667327	33667860	0.98	+	0	transcript_id "Ledus.S1G416000.t1"; gene_id "Ledus.S1G416000"
Ledus.S1	AUGUSTUS	exon	33667327	33667860	.	+	.	transcript_id "Ledus.S1G416000.t1"; gene_id "Ledus.S1G416000"
Ledus.S1	AUGUSTUS	stop_codon	33667861	33667863	.	+	0	transcript_id "Ledus.S1G416000.t1"; gene_id "Ledus.S1G416000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6346.t1 is derived from g3789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30682440	30682670	.	-	.	Ledus.S1G376700
Ledus.S1	AUGUSTUS	transcript	30682440	30682670	.	-	.	transcript_id "Ledus.S1G376700.t1"; gene_id "Ledus.S1G376700"
Ledus.S1	AUGUSTUS	stop_codon	30682437	30682439	.	-	0	transcript_id "Ledus.S1G376700.t1"; gene_id "Ledus.S1G376700"
Ledus.S1	AUGUSTUS	CDS	30682440	30682670	0.51	-	0	transcript_id "Ledus.S1G376700.t1"; gene_id "Ledus.S1G376700"
Ledus.S1	AUGUSTUS	exon	30682440	30682670	.	-	.	transcript_id "Ledus.S1G376700.t1"; gene_id "Ledus.S1G376700"
Ledus.S1	AUGUSTUS	start_codon	30682668	30682670	.	-	0	transcript_id "Ledus.S1G376700.t1"; gene_id "Ledus.S1G376700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11431.t1 is derived from g5049.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4249209	4254155	.	-	.	Ledus.S4G058700
Ledus.S4	AUGUSTUS	transcript	4249209	4254155	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	stop_codon	4249206	4249208	.	-	0	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4249209	4249466	1	-	0	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4249209	4249466	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4249467	4249562	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4249563	4249904	1	-	0	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4249563	4249904	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4249905	4250000	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250001	4250111	1	-	0	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250001	4250111	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4250112	4250279	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250280	4250369	1	-	0	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250280	4250369	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4250370	4250490	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250491	4250547	1	-	0	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250491	4250547	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4250548	4250637	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250638	4250711	1	-	2	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250638	4250711	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4250712	4250816	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250817	4251667	0.83	-	1	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250817	4251667	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4251668	4251826	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4251827	4251964	1	-	1	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4251827	4251964	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4251965	4252046	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4252047	4252156	1	-	0	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4252047	4252156	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4252157	4252254	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4252255	4252341	1	-	0	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4252255	4252341	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4252342	4252434	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4252435	4252649	1	-	2	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4252435	4252649	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4252650	4252780	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4252781	4253150	1	-	0	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4252781	4253150	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4253151	4253236	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4253237	4253492	1	-	1	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4253237	4253492	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4253493	4253582	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4253583	4253658	0.93	-	2	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4253583	4253658	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4253659	4253770	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4253771	4253986	0.9	-	2	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4253771	4253986	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4253987	4254085	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4254086	4254155	0.84	-	0	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4254086	4254155	.	-	.	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	start_codon	4254153	4254155	.	-	0	transcript_id "Ledus.S4G058700.t1"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	transcript	4249209	4254155	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	stop_codon	4249206	4249208	.	-	0	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4249209	4249466	1	-	0	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4249209	4249466	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4249467	4249562	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4249563	4249904	1	-	0	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4249563	4249904	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4249905	4250000	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250001	4250111	1	-	0	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250001	4250111	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4250112	4250279	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250280	4250369	1	-	0	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250280	4250369	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4250370	4250490	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250491	4250547	1	-	0	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250491	4250547	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4250548	4250637	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250638	4250711	0.98	-	2	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250638	4250711	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4250712	4250816	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250817	4251667	0.84	-	1	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250817	4251667	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4251668	4251826	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4251827	4251964	1	-	1	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4251827	4251964	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4251965	4252046	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4252047	4252156	1	-	0	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4252047	4252156	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4252157	4252254	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4252255	4252341	1	-	0	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4252255	4252341	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4252342	4252434	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4252435	4252649	1	-	2	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4252435	4252649	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4252650	4252780	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4252781	4253150	1	-	0	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4252781	4253150	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4253151	4253236	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4253237	4253492	1	-	1	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4253237	4253492	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4253493	4253582	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4253583	4253658	0.95	-	2	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4253583	4253658	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4253659	4253770	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4253771	4253986	0.87	-	2	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4253771	4253986	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4253987	4254079	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4254080	4254155	0.7	-	0	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4254080	4254155	.	-	.	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	start_codon	4254153	4254155	.	-	0	transcript_id "Ledus.S4G058700.t2"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	transcript	4249209	4254155	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	stop_codon	4249206	4249208	.	-	0	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4249209	4249466	1	-	0	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4249209	4249466	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4249467	4249562	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4249563	4249904	1	-	0	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4249563	4249904	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4249905	4250000	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250001	4250111	1	-	0	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250001	4250111	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4250112	4250279	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250280	4250369	1	-	0	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250280	4250369	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4250370	4250490	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250491	4250547	1	-	0	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250491	4250547	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4250548	4250637	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250638	4250711	1	-	2	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250638	4250711	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4250712	4250816	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4250817	4251575	0.6	-	2	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4250817	4251575	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4251576	4251673	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4251674	4251735	0.97	-	1	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4251674	4251735	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4251736	4251826	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4251827	4251964	1	-	1	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4251827	4251964	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4251965	4252046	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4252047	4252156	1	-	0	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4252047	4252156	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4252157	4252254	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4252255	4252341	1	-	0	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4252255	4252341	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4252342	4252434	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4252435	4252649	1	-	2	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4252435	4252649	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4252650	4252780	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4252781	4253150	1	-	0	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4252781	4253150	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4253151	4253236	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4253237	4253492	1	-	1	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4253237	4253492	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4253493	4253582	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4253583	4253658	0.93	-	2	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4253583	4253658	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4253659	4253770	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4253771	4253986	0.88	-	2	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4253771	4253986	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	intron	4253987	4254079	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	CDS	4254080	4254155	0.71	-	0	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	exon	4254080	4254155	.	-	.	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
Ledus.S4	AUGUSTUS	start_codon	4254153	4254155	.	-	0	transcript_id "Ledus.S4G058700.t3"; gene_id "Ledus.S4G058700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10185.t1 is derived from g11215.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13482992	13488386	.	-	.	Ledus.S3G166200
Ledus.S3	AUGUSTUS	transcript	13482992	13488386	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	stop_codon	13482989	13482991	.	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13482992	13483384	0.82	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13482992	13483384	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13483385	13483460	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13483461	13483610	1	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13483461	13483610	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13483611	13483713	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13483714	13483963	1	-	1	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13483714	13483963	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13483964	13484053	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13484054	13484166	1	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13484054	13484166	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13484167	13484240	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13484241	13484324	1	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13484241	13484324	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13484325	13484425	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13484426	13484700	1	-	2	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13484426	13484700	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13484701	13484871	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13484872	13484986	0.96	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13484872	13484986	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13484987	13485091	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13485092	13485287	0.84	-	1	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13485092	13485287	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13485288	13485409	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13485410	13485462	1	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13485410	13485462	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13485463	13485643	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13485644	13485772	0.99	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13485644	13485772	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13485773	13485880	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13485881	13485976	1	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13485881	13485976	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13485977	13486137	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13486138	13486203	0.44	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13486138	13486203	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13486204	13486318	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13486319	13486372	0.43	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13486319	13486372	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13486373	13486484	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13486485	13486943	0.45	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13486485	13486943	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13486944	13487138	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13487139	13487223	1	-	1	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13487139	13487223	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	intron	13487224	13487331	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	CDS	13487332	13488386	0.99	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	exon	13487332	13488386	.	-	.	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
Ledus.S3	AUGUSTUS	start_codon	13488384	13488386	.	-	0	transcript_id "Ledus.S3G166200.t1"; gene_id "Ledus.S3G166200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12581.t1 is derived from g6203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12971612	12972142	.	-	.	Ledus.S4G173700
Ledus.S4	AUGUSTUS	transcript	12971612	12972142	.	-	.	transcript_id "Ledus.S4G173700.t1"; gene_id "Ledus.S4G173700"
Ledus.S4	AUGUSTUS	stop_codon	12971609	12971611	.	-	0	transcript_id "Ledus.S4G173700.t1"; gene_id "Ledus.S4G173700"
Ledus.S4	AUGUSTUS	CDS	12971612	12971662	0.37	-	0	transcript_id "Ledus.S4G173700.t1"; gene_id "Ledus.S4G173700"
Ledus.S4	AUGUSTUS	exon	12971612	12971662	.	-	.	transcript_id "Ledus.S4G173700.t1"; gene_id "Ledus.S4G173700"
Ledus.S4	AUGUSTUS	intron	12971663	12971890	.	-	.	transcript_id "Ledus.S4G173700.t1"; gene_id "Ledus.S4G173700"
Ledus.S4	AUGUSTUS	CDS	12971891	12972142	0.27	-	0	transcript_id "Ledus.S4G173700.t1"; gene_id "Ledus.S4G173700"
Ledus.S4	AUGUSTUS	exon	12971891	12972142	.	-	.	transcript_id "Ledus.S4G173700.t1"; gene_id "Ledus.S4G173700"
Ledus.S4	AUGUSTUS	start_codon	12972140	12972142	.	-	0	transcript_id "Ledus.S4G173700.t1"; gene_id "Ledus.S4G173700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6345.t1 is derived from g3788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30681651	30681971	.	+	.	Ledus.S1G376600
Ledus.S1	AUGUSTUS	transcript	30681651	30681971	.	+	.	transcript_id "Ledus.S1G376600.t1"; gene_id "Ledus.S1G376600"
Ledus.S1	AUGUSTUS	start_codon	30681651	30681653	.	+	0	transcript_id "Ledus.S1G376600.t1"; gene_id "Ledus.S1G376600"
Ledus.S1	AUGUSTUS	CDS	30681651	30681971	0.02	+	0	transcript_id "Ledus.S1G376600.t1"; gene_id "Ledus.S1G376600"
Ledus.S1	AUGUSTUS	exon	30681651	30681971	.	+	.	transcript_id "Ledus.S1G376600.t1"; gene_id "Ledus.S1G376600"
Ledus.S1	AUGUSTUS	stop_codon	30681972	30681974	.	+	0	transcript_id "Ledus.S1G376600.t1"; gene_id "Ledus.S1G376600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3458.t1 is derived from g893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8482322	8483817	.	+	.	Ledus.S1G087900
Ledus.S1	AUGUSTUS	transcript	8482322	8483817	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	start_codon	8482322	8482324	.	+	0	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	CDS	8482322	8482368	0.79	+	0	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	exon	8482322	8482368	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	intron	8482369	8482483	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	CDS	8482484	8482606	0.97	+	1	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	exon	8482484	8482606	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	intron	8482607	8482690	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	CDS	8482691	8482852	0.61	+	1	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	exon	8482691	8482852	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	intron	8482853	8482976	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	CDS	8482977	8483052	0.61	+	1	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	exon	8482977	8483052	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	intron	8483053	8483164	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	CDS	8483165	8483278	0.99	+	0	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	exon	8483165	8483278	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	intron	8483279	8483399	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	CDS	8483400	8483576	0.99	+	0	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	exon	8483400	8483576	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	intron	8483577	8483751	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	CDS	8483752	8483817	1	+	0	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	exon	8483752	8483817	.	+	.	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
Ledus.S1	AUGUSTUS	stop_codon	8483818	8483820	.	+	0	transcript_id "Ledus.S1G087900.t1"; gene_id "Ledus.S1G087900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3049.t1 is derived from g484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5516851	5518243	.	+	.	Ledus.S1G047000
Ledus.S1	AUGUSTUS	transcript	5516851	5518243	.	+	.	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	start_codon	5516851	5516853	.	+	0	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	CDS	5516851	5516948	1	+	0	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	exon	5516851	5516948	.	+	.	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	intron	5516949	5517167	.	+	.	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	CDS	5517168	5517293	1	+	1	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	exon	5517168	5517293	.	+	.	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	intron	5517294	5517392	.	+	.	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	CDS	5517393	5517550	1	+	1	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	exon	5517393	5517550	.	+	.	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	intron	5517551	5517703	.	+	.	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	CDS	5517704	5517791	1	+	2	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	exon	5517704	5517791	.	+	.	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	intron	5517792	5517971	.	+	.	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	CDS	5517972	5518075	0.59	+	1	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	exon	5517972	5518075	.	+	.	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	intron	5518076	5518151	.	+	.	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	CDS	5518152	5518243	0.4	+	2	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	exon	5518152	5518243	.	+	.	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
Ledus.S1	AUGUSTUS	stop_codon	5518244	5518246	.	+	0	transcript_id "Ledus.S1G047000.t1"; gene_id "Ledus.S1G047000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6006.t1 is derived from g3449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28230768	28231731	.	-	.	Ledus.S1G342700
Ledus.S1	AUGUSTUS	transcript	28230768	28231731	.	-	.	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	stop_codon	28230765	28230767	.	-	0	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	CDS	28230768	28230812	1	-	0	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	exon	28230768	28230812	.	-	.	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	intron	28230813	28231006	.	-	.	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	CDS	28231007	28231123	1	-	0	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	exon	28231007	28231123	.	-	.	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	intron	28231124	28231267	.	-	.	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	CDS	28231268	28231387	1	-	0	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	exon	28231268	28231387	.	-	.	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	intron	28231388	28231542	.	-	.	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	CDS	28231543	28231584	1	-	0	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	exon	28231543	28231584	.	-	.	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	intron	28231585	28231725	.	-	.	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	CDS	28231726	28231731	1	-	0	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	exon	28231726	28231731	.	-	.	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
Ledus.S1	AUGUSTUS	start_codon	28231729	28231731	.	-	0	transcript_id "Ledus.S1G342700.t1"; gene_id "Ledus.S1G342700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6096.t1 is derived from g3539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28891419	28892742	.	-	.	Ledus.S1G351700
Ledus.S1	AUGUSTUS	transcript	28891419	28892742	.	-	.	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	stop_codon	28891416	28891418	.	-	0	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	CDS	28891419	28891544	0.39	-	0	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	exon	28891419	28891544	.	-	.	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	intron	28891545	28891743	.	-	.	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	CDS	28891744	28891809	0.81	-	0	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	exon	28891744	28891809	.	-	.	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	intron	28891810	28891893	.	-	.	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	CDS	28891894	28892191	0.88	-	1	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	exon	28891894	28892191	.	-	.	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	intron	28892192	28892290	.	-	.	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	CDS	28892291	28892742	0.56	-	0	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	exon	28892291	28892742	.	-	.	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
Ledus.S1	AUGUSTUS	start_codon	28892740	28892742	.	-	0	transcript_id "Ledus.S1G351700.t1"; gene_id "Ledus.S1G351700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5731.t1 is derived from g3170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26332291	26333250	.	-	.	Ledus.S1G315200
Ledus.S1	AUGUSTUS	transcript	26332291	26333250	.	-	.	transcript_id "Ledus.S1G315200.t1"; gene_id "Ledus.S1G315200"
Ledus.S1	AUGUSTUS	stop_codon	26332288	26332290	.	-	0	transcript_id "Ledus.S1G315200.t1"; gene_id "Ledus.S1G315200"
Ledus.S1	AUGUSTUS	CDS	26332291	26333250	0.64	-	0	transcript_id "Ledus.S1G315200.t1"; gene_id "Ledus.S1G315200"
Ledus.S1	AUGUSTUS	exon	26332291	26333250	.	-	.	transcript_id "Ledus.S1G315200.t1"; gene_id "Ledus.S1G315200"
Ledus.S1	AUGUSTUS	start_codon	26333248	26333250	.	-	0	transcript_id "Ledus.S1G315200.t1"; gene_id "Ledus.S1G315200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10413.t1 is derived from g11443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15031618	15032238	.	-	.	Ledus.S3G189000
Ledus.S3	AUGUSTUS	transcript	15031618	15032238	.	-	.	transcript_id "Ledus.S3G189000.t1"; gene_id "Ledus.S3G189000"
Ledus.S3	AUGUSTUS	stop_codon	15031615	15031617	.	-	0	transcript_id "Ledus.S3G189000.t1"; gene_id "Ledus.S3G189000"
Ledus.S3	AUGUSTUS	CDS	15031618	15031627	0.67	-	1	transcript_id "Ledus.S3G189000.t1"; gene_id "Ledus.S3G189000"
Ledus.S3	AUGUSTUS	exon	15031618	15031627	.	-	.	transcript_id "Ledus.S3G189000.t1"; gene_id "Ledus.S3G189000"
Ledus.S3	AUGUSTUS	intron	15031628	15031732	.	-	.	transcript_id "Ledus.S3G189000.t1"; gene_id "Ledus.S3G189000"
Ledus.S3	AUGUSTUS	CDS	15031733	15031770	0.84	-	0	transcript_id "Ledus.S3G189000.t1"; gene_id "Ledus.S3G189000"
Ledus.S3	AUGUSTUS	exon	15031733	15031770	.	-	.	transcript_id "Ledus.S3G189000.t1"; gene_id "Ledus.S3G189000"
Ledus.S3	AUGUSTUS	intron	15031771	15032070	.	-	.	transcript_id "Ledus.S3G189000.t1"; gene_id "Ledus.S3G189000"
Ledus.S3	AUGUSTUS	CDS	15032071	15032238	0.94	-	0	transcript_id "Ledus.S3G189000.t1"; gene_id "Ledus.S3G189000"
Ledus.S3	AUGUSTUS	exon	15032071	15032238	.	-	.	transcript_id "Ledus.S3G189000.t1"; gene_id "Ledus.S3G189000"
Ledus.S3	AUGUSTUS	start_codon	15032236	15032238	.	-	0	transcript_id "Ledus.S3G189000.t1"; gene_id "Ledus.S3G189000"
# This transcript jg10999.t2 is derived from g4617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11000.t1 is derived from g4618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1062936	1063524	.	-	.	Ledus.S4G015600
Ledus.S4	AUGUSTUS	transcript	1062936	1063524	.	-	.	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	stop_codon	1062933	1062935	.	-	0	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	CDS	1062936	1063089	0.59	-	1	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	exon	1062936	1063089	.	-	.	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	intron	1063090	1063207	.	-	.	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	CDS	1063208	1063302	0.25	-	0	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	exon	1063208	1063302	.	-	.	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	intron	1063303	1063394	.	-	.	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	CDS	1063395	1063410	0.33	-	1	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	exon	1063395	1063410	.	-	.	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	intron	1063411	1063498	.	-	.	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	CDS	1063499	1063524	0.54	-	0	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	exon	1063499	1063524	.	-	.	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
Ledus.S4	AUGUSTUS	start_codon	1063522	1063524	.	-	0	transcript_id "Ledus.S4G015600.t1"; gene_id "Ledus.S4G015600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8542.t1 is derived from g9572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	99777	102783	.	-	.	Ledus.S3G001900
Ledus.S3	AUGUSTUS	transcript	99777	102783	.	-	.	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	stop_codon	99774	99776	.	-	0	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	CDS	99777	100050	1	-	1	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	exon	99777	100050	.	-	.	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	intron	100051	100195	.	-	.	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	CDS	100196	100303	1	-	1	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	exon	100196	100303	.	-	.	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	intron	100304	100389	.	-	.	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	CDS	100390	100704	0.9	-	1	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	exon	100390	100704	.	-	.	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	intron	100705	100873	.	-	.	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	CDS	100874	102783	0.89	-	0	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	exon	100874	102783	.	-	.	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
Ledus.S3	AUGUSTUS	start_codon	102781	102783	.	-	0	transcript_id "Ledus.S3G001900.t1"; gene_id "Ledus.S3G001900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2253.t1 is derived from g9116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16582517	16583107	.	+	.	Ledus.S2G213500
Ledus.S2	AUGUSTUS	transcript	16582517	16583107	.	+	.	transcript_id "Ledus.S2G213500.t1"; gene_id "Ledus.S2G213500"
Ledus.S2	AUGUSTUS	start_codon	16582517	16582519	.	+	0	transcript_id "Ledus.S2G213500.t1"; gene_id "Ledus.S2G213500"
Ledus.S2	AUGUSTUS	CDS	16582517	16582760	0.91	+	0	transcript_id "Ledus.S2G213500.t1"; gene_id "Ledus.S2G213500"
Ledus.S2	AUGUSTUS	exon	16582517	16582760	.	+	.	transcript_id "Ledus.S2G213500.t1"; gene_id "Ledus.S2G213500"
Ledus.S2	AUGUSTUS	intron	16582761	16582886	.	+	.	transcript_id "Ledus.S2G213500.t1"; gene_id "Ledus.S2G213500"
Ledus.S2	AUGUSTUS	CDS	16582887	16583107	0.94	+	2	transcript_id "Ledus.S2G213500.t1"; gene_id "Ledus.S2G213500"
Ledus.S2	AUGUSTUS	exon	16582887	16583107	.	+	.	transcript_id "Ledus.S2G213500.t1"; gene_id "Ledus.S2G213500"
Ledus.S2	AUGUSTUS	stop_codon	16583108	16583110	.	+	0	transcript_id "Ledus.S2G213500.t1"; gene_id "Ledus.S2G213500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11351.t1 is derived from g4969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3721259	3724507	.	-	.	Ledus.S4G050700
Ledus.S4	AUGUSTUS	transcript	3721259	3724507	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	stop_codon	3721256	3721258	.	-	0	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	CDS	3721259	3721321	0.86	-	0	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	exon	3721259	3721321	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	intron	3721322	3721497	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	CDS	3721498	3721617	1	-	0	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	exon	3721498	3721617	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	intron	3721618	3721744	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	CDS	3721745	3721891	0.98	-	0	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	exon	3721745	3721891	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	intron	3721892	3722002	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	CDS	3722003	3722442	0.84	-	2	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	exon	3722003	3722442	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	intron	3722443	3722567	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	CDS	3722568	3722873	0.72	-	2	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	exon	3722568	3722873	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	intron	3722874	3722983	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	CDS	3722984	3723184	1	-	2	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	exon	3722984	3723184	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	intron	3723185	3723325	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	CDS	3723326	3723484	1	-	2	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	exon	3723326	3723484	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	intron	3723485	3723612	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	CDS	3723613	3724507	0.93	-	0	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	exon	3723613	3724507	.	-	.	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
Ledus.S4	AUGUSTUS	start_codon	3724505	3724507	.	-	0	transcript_id "Ledus.S4G050700.t1"; gene_id "Ledus.S4G050700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5948.t1 is derived from g3391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28006455	28007801	.	+	.	Ledus.S1G336900
Ledus.S1	AUGUSTUS	transcript	28006455	28007801	.	+	.	transcript_id "Ledus.S1G336900.t1"; gene_id "Ledus.S1G336900"
Ledus.S1	AUGUSTUS	start_codon	28006455	28006457	.	+	0	transcript_id "Ledus.S1G336900.t1"; gene_id "Ledus.S1G336900"
Ledus.S1	AUGUSTUS	CDS	28006455	28007801	0.96	+	0	transcript_id "Ledus.S1G336900.t1"; gene_id "Ledus.S1G336900"
Ledus.S1	AUGUSTUS	exon	28006455	28007801	.	+	.	transcript_id "Ledus.S1G336900.t1"; gene_id "Ledus.S1G336900"
Ledus.S1	AUGUSTUS	stop_codon	28007802	28007804	.	+	0	transcript_id "Ledus.S1G336900.t1"; gene_id "Ledus.S1G336900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11027.t1 is derived from g4645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1285286	1286440	.	+	.	Ledus.S4G018300
Ledus.S4	AUGUSTUS	transcript	1285286	1286440	.	+	.	transcript_id "Ledus.S4G018300.t1"; gene_id "Ledus.S4G018300"
Ledus.S4	AUGUSTUS	start_codon	1285286	1285288	.	+	0	transcript_id "Ledus.S4G018300.t1"; gene_id "Ledus.S4G018300"
Ledus.S4	AUGUSTUS	CDS	1285286	1286440	0.72	+	0	transcript_id "Ledus.S4G018300.t1"; gene_id "Ledus.S4G018300"
Ledus.S4	AUGUSTUS	exon	1285286	1286440	.	+	.	transcript_id "Ledus.S4G018300.t1"; gene_id "Ledus.S4G018300"
Ledus.S4	AUGUSTUS	stop_codon	1286441	1286443	.	+	0	transcript_id "Ledus.S4G018300.t1"; gene_id "Ledus.S4G018300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9792.t1 is derived from g10822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9846978	9849328	.	+	.	Ledus.S3G126900
Ledus.S3	AUGUSTUS	transcript	9846978	9849328	.	+	.	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	start_codon	9846978	9846980	.	+	0	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	CDS	9846978	9848273	0.99	+	0	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	exon	9846978	9848273	.	+	.	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	intron	9848274	9848367	.	+	.	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	CDS	9848368	9848495	1	+	0	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	exon	9848368	9848495	.	+	.	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	intron	9848496	9848583	.	+	.	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	CDS	9848584	9848731	1	+	1	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	exon	9848584	9848731	.	+	.	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	intron	9848732	9848827	.	+	.	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	CDS	9848828	9849088	0.6	+	0	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	exon	9848828	9849088	.	+	.	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	intron	9849089	9849172	.	+	.	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	CDS	9849173	9849328	0.58	+	0	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	exon	9849173	9849328	.	+	.	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
Ledus.S3	AUGUSTUS	stop_codon	9849329	9849331	.	+	0	transcript_id "Ledus.S3G126900.t1"; gene_id "Ledus.S3G126900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3072.t1 is derived from g507.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5694143	5697142	.	-	.	Ledus.S1G049300
Ledus.S1	AUGUSTUS	transcript	5694143	5697142	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	stop_codon	5694140	5694142	.	-	0	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5694143	5694164	1	-	1	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5694143	5694164	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	intron	5694165	5694260	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5694261	5694359	1	-	1	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5694261	5694359	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	intron	5694360	5694533	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5694534	5695125	0.98	-	2	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5694534	5695125	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	intron	5695126	5695206	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5695207	5695296	1	-	2	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5695207	5695296	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	intron	5695297	5695762	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5695763	5695935	1	-	1	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5695763	5695935	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	intron	5695936	5696014	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5696015	5696886	0.99	-	0	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5696015	5696886	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	intron	5696887	5697121	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5697122	5697142	1	-	0	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5697122	5697142	.	-	.	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	start_codon	5697140	5697142	.	-	0	transcript_id "Ledus.S1G049300.t1"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	transcript	5694143	5697142	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	stop_codon	5694140	5694142	.	-	0	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5694143	5694167	0.99	-	1	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5694143	5694167	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	intron	5694168	5694260	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5694261	5694359	0.99	-	1	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5694261	5694359	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	intron	5694360	5694533	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5694534	5695125	0.97	-	2	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5694534	5695125	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	intron	5695126	5695206	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5695207	5695296	1	-	2	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5695207	5695296	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	intron	5695297	5695762	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5695763	5695935	1	-	1	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5695763	5695935	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	intron	5695936	5696014	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5696015	5696886	0.98	-	0	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5696015	5696886	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	intron	5696887	5697121	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	CDS	5697122	5697142	0.98	-	0	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	exon	5697122	5697142	.	-	.	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
Ledus.S1	AUGUSTUS	start_codon	5697140	5697142	.	-	0	transcript_id "Ledus.S1G049300.t2"; gene_id "Ledus.S1G049300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8619.t1 is derived from g9649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	717613	717819	.	-	.	Ledus.S3G009600
Ledus.S3	AUGUSTUS	transcript	717613	717819	.	-	.	transcript_id "Ledus.S3G009600.t1"; gene_id "Ledus.S3G009600"
Ledus.S3	AUGUSTUS	stop_codon	717610	717612	.	-	0	transcript_id "Ledus.S3G009600.t1"; gene_id "Ledus.S3G009600"
Ledus.S3	AUGUSTUS	CDS	717613	717819	0.56	-	0	transcript_id "Ledus.S3G009600.t1"; gene_id "Ledus.S3G009600"
Ledus.S3	AUGUSTUS	exon	717613	717819	.	-	.	transcript_id "Ledus.S3G009600.t1"; gene_id "Ledus.S3G009600"
Ledus.S3	AUGUSTUS	start_codon	717817	717819	.	-	0	transcript_id "Ledus.S3G009600.t1"; gene_id "Ledus.S3G009600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4482.t1 is derived from g1918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17272481	17280153	.	-	.	Ledus.S1G190300
Ledus.S1	AUGUSTUS	transcript	17272481	17274611	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	stop_codon	17272478	17272480	.	-	0	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17272481	17272525	0.99	-	0	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17272481	17272525	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17272526	17272619	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17272620	17272708	1	-	2	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17272620	17272708	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17272709	17272847	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17272848	17273157	1	-	0	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17272848	17273157	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17273158	17273301	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17273302	17273389	0.98	-	1	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17273302	17273389	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17273390	17273492	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17273493	17273923	0.83	-	0	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17273493	17273923	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17273924	17274038	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17274039	17274211	0.98	-	2	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17274039	17274211	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17274212	17274331	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17274332	17274611	0.89	-	0	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17274332	17274611	.	-	.	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	start_codon	17274609	17274611	.	-	0	transcript_id "Ledus.S1G190300.t1"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	transcript	17272481	17280153	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	stop_codon	17272478	17272480	.	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17272481	17272525	0.97	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17272481	17272525	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17272526	17272619	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17272620	17272708	1	-	2	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17272620	17272708	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17272709	17272847	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17272848	17273157	1	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17272848	17273157	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17273158	17273301	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17273302	17273389	0.96	-	1	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17273302	17273389	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17273390	17273492	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17273493	17273923	0.8	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17273493	17273923	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17273924	17274038	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17274039	17274211	0.98	-	2	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17274039	17274211	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17274212	17274331	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17274332	17274616	0.82	-	2	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17274332	17274616	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17274617	17274694	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17274695	17274699	0.67	-	1	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17274695	17274699	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17274700	17275055	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17275056	17275333	0.24	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17275056	17275333	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17275334	17275633	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17275634	17275671	0.24	-	2	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17275634	17275671	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17275672	17275897	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17275898	17276003	0.99	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17275898	17276003	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17276004	17276093	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17276094	17276276	1	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17276094	17276276	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17276277	17276350	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17276351	17276422	1	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17276351	17276422	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17276423	17276492	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17276493	17276658	1	-	1	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17276493	17276658	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17276659	17276757	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17276758	17276940	1	-	1	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17276758	17276940	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17276941	17277015	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17277016	17277092	1	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17277016	17277092	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17277093	17277175	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17277176	17277271	1	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17277176	17277271	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17277272	17277358	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17277359	17277402	1	-	2	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17277359	17277402	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17277403	17277521	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17277522	17277609	0.99	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17277522	17277609	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17277610	17277730	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17277731	17277812	1	-	1	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17277731	17277812	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17277813	17277914	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17277915	17278048	1	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17277915	17278048	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17278049	17278141	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17278142	17278267	1	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17278142	17278267	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17278268	17278368	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17278369	17278452	0.94	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17278369	17278452	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17278453	17278576	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17278577	17278721	1	-	1	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17278577	17278721	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17278722	17278824	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17278825	17278895	0.81	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17278825	17278895	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17278896	17279002	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17279003	17279073	1	-	2	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17279003	17279073	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17279074	17279208	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17279209	17279358	0.9	-	2	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17279209	17279358	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17279359	17279472	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17279473	17279540	1	-	1	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17279473	17279540	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17279541	17279714	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17279715	17279765	1	-	1	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17279715	17279765	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17279766	17279861	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17279862	17279878	1	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17279862	17279878	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17279879	17280114	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17280115	17280153	0.52	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17280115	17280153	.	-	.	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	start_codon	17280151	17280153	.	-	0	transcript_id "Ledus.S1G190300.t2"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	transcript	17274643	17280153	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	stop_codon	17274640	17274642	.	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17274643	17274694	0.77	-	1	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17274643	17274694	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17274695	17275055	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17275056	17275333	0.21	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17275056	17275333	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17275334	17275633	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17275634	17275671	0.2	-	2	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17275634	17275671	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17275672	17275897	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17275898	17276003	0.99	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17275898	17276003	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17276004	17276093	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17276094	17276276	1	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17276094	17276276	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17276277	17276350	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17276351	17276422	1	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17276351	17276422	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17276423	17276492	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17276493	17276658	1	-	1	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17276493	17276658	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17276659	17276757	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17276758	17276940	1	-	1	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17276758	17276940	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17276941	17277015	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17277016	17277092	1	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17277016	17277092	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17277093	17277175	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17277176	17277271	1	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17277176	17277271	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17277272	17277358	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17277359	17277402	1	-	2	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17277359	17277402	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17277403	17277521	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17277522	17277609	1	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17277522	17277609	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17277610	17277730	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17277731	17277812	1	-	1	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17277731	17277812	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17277813	17277914	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17277915	17278048	1	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17277915	17278048	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17278049	17278141	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17278142	17278267	1	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17278142	17278267	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17278268	17278368	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17278369	17278452	0.96	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17278369	17278452	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17278453	17278576	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17278577	17278721	1	-	1	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17278577	17278721	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17278722	17278824	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17278825	17278895	0.79	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17278825	17278895	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17278896	17279002	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17279003	17279073	1	-	2	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17279003	17279073	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17279074	17279208	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17279209	17279358	0.91	-	2	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17279209	17279358	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17279359	17279472	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17279473	17279540	1	-	1	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17279473	17279540	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17279541	17279714	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17279715	17279765	1	-	1	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17279715	17279765	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17279766	17279861	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17279862	17279878	1	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17279862	17279878	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	intron	17279879	17280114	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	CDS	17280115	17280153	0.5	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	exon	17280115	17280153	.	-	.	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
Ledus.S1	AUGUSTUS	start_codon	17280151	17280153	.	-	0	transcript_id "Ledus.S1G190300.t3"; gene_id "Ledus.S1G190300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8647.t1 is derived from g9677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1068204	1070232	.	-	.	Ledus.S3G012400
Ledus.S3	AUGUSTUS	transcript	1068204	1070232	.	-	.	transcript_id "Ledus.S3G012400.t1"; gene_id "Ledus.S3G012400"
Ledus.S3	AUGUSTUS	stop_codon	1068201	1068203	.	-	0	transcript_id "Ledus.S3G012400.t1"; gene_id "Ledus.S3G012400"
Ledus.S3	AUGUSTUS	CDS	1068204	1069550	1	-	0	transcript_id "Ledus.S3G012400.t1"; gene_id "Ledus.S3G012400"
Ledus.S3	AUGUSTUS	exon	1068204	1069550	.	-	.	transcript_id "Ledus.S3G012400.t1"; gene_id "Ledus.S3G012400"
Ledus.S3	AUGUSTUS	intron	1069551	1069629	.	-	.	transcript_id "Ledus.S3G012400.t1"; gene_id "Ledus.S3G012400"
Ledus.S3	AUGUSTUS	CDS	1069630	1070232	1	-	0	transcript_id "Ledus.S3G012400.t1"; gene_id "Ledus.S3G012400"
Ledus.S3	AUGUSTUS	exon	1069630	1070232	.	-	.	transcript_id "Ledus.S3G012400.t1"; gene_id "Ledus.S3G012400"
Ledus.S3	AUGUSTUS	start_codon	1070230	1070232	.	-	0	transcript_id "Ledus.S3G012400.t1"; gene_id "Ledus.S3G012400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12597.t1 is derived from g6219.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13036776	13037321	.	+	.	Ledus.S4G175300
Ledus.S4	AUGUSTUS	transcript	13036776	13037321	.	+	.	transcript_id "Ledus.S4G175300.t1"; gene_id "Ledus.S4G175300"
Ledus.S4	AUGUSTUS	start_codon	13036776	13036778	.	+	0	transcript_id "Ledus.S4G175300.t1"; gene_id "Ledus.S4G175300"
Ledus.S4	AUGUSTUS	CDS	13036776	13037321	0.99	+	0	transcript_id "Ledus.S4G175300.t1"; gene_id "Ledus.S4G175300"
Ledus.S4	AUGUSTUS	exon	13036776	13037321	.	+	.	transcript_id "Ledus.S4G175300.t1"; gene_id "Ledus.S4G175300"
Ledus.S4	AUGUSTUS	stop_codon	13037322	13037324	.	+	0	transcript_id "Ledus.S4G175300.t1"; gene_id "Ledus.S4G175300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7896.t1 is derived from g12567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7718142	7719996	.	+	.	Ledus.S5G067400
Ledus.S5	AUGUSTUS	transcript	7718142	7719996	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	start_codon	7718142	7718144	.	+	0	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	CDS	7718142	7718379	1	+	0	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	exon	7718142	7718379	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	intron	7718380	7718493	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	CDS	7718494	7718663	0.99	+	2	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	exon	7718494	7718663	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	intron	7718664	7718885	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	CDS	7718886	7718993	1	+	0	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	exon	7718886	7718993	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	intron	7718994	7719076	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	CDS	7719077	7719241	1	+	0	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	exon	7719077	7719241	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	intron	7719242	7719456	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	CDS	7719457	7719628	1	+	0	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	exon	7719457	7719628	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	intron	7719629	7719763	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	CDS	7719764	7719837	1	+	2	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	exon	7719764	7719837	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	intron	7719838	7719915	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	CDS	7719916	7719996	0.99	+	0	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	exon	7719916	7719996	.	+	.	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
Ledus.S5	AUGUSTUS	stop_codon	7719997	7719999	.	+	0	transcript_id "Ledus.S5G067400.t1"; gene_id "Ledus.S5G067400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6470.t1 is derived from g3913.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31418146	31419643	.	-	.	Ledus.S1G389100
Ledus.S1	AUGUSTUS	transcript	31418146	31419643	.	-	.	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	stop_codon	31418143	31418145	.	-	0	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	CDS	31418146	31418504	1	-	2	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	exon	31418146	31418504	.	-	.	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	intron	31418505	31418589	.	-	.	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	CDS	31418590	31418740	1	-	0	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	exon	31418590	31418740	.	-	.	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	intron	31418741	31418830	.	-	.	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	CDS	31418831	31419104	1	-	1	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	exon	31418831	31419104	.	-	.	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	intron	31419105	31419233	.	-	.	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	CDS	31419234	31419295	1	-	0	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	exon	31419234	31419295	.	-	.	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	intron	31419296	31419381	.	-	.	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	CDS	31419382	31419558	0.77	-	0	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	exon	31419382	31419558	.	-	.	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	intron	31419559	31419637	.	-	.	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	CDS	31419638	31419643	0.73	-	0	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	exon	31419638	31419643	.	-	.	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	start_codon	31419641	31419643	.	-	0	transcript_id "Ledus.S1G389100.t1"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	transcript	31418484	31419643	.	-	.	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	stop_codon	31418481	31418483	.	-	0	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	CDS	31418484	31418504	0.76	-	0	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	exon	31418484	31418504	.	-	.	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	intron	31418505	31418593	.	-	.	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	CDS	31418594	31418740	0.76	-	0	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	exon	31418594	31418740	.	-	.	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	intron	31418741	31418830	.	-	.	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	CDS	31418831	31419104	1	-	1	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	exon	31418831	31419104	.	-	.	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	intron	31419105	31419233	.	-	.	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	CDS	31419234	31419295	1	-	0	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	exon	31419234	31419295	.	-	.	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	intron	31419296	31419381	.	-	.	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	CDS	31419382	31419558	0.73	-	0	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	exon	31419382	31419558	.	-	.	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	intron	31419559	31419637	.	-	.	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	CDS	31419638	31419643	0.68	-	0	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	exon	31419638	31419643	.	-	.	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
Ledus.S1	AUGUSTUS	start_codon	31419641	31419643	.	-	0	transcript_id "Ledus.S1G389100.t2"; gene_id "Ledus.S1G389100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6644.t1 is derived from g4087.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32843750	32844517	.	+	.	Ledus.S1G406500
Ledus.S1	AUGUSTUS	transcript	32843750	32844517	.	+	.	transcript_id "Ledus.S1G406500.t1"; gene_id "Ledus.S1G406500"
Ledus.S1	AUGUSTUS	start_codon	32843750	32843752	.	+	0	transcript_id "Ledus.S1G406500.t1"; gene_id "Ledus.S1G406500"
Ledus.S1	AUGUSTUS	CDS	32843750	32844517	0.18	+	0	transcript_id "Ledus.S1G406500.t1"; gene_id "Ledus.S1G406500"
Ledus.S1	AUGUSTUS	exon	32843750	32844517	.	+	.	transcript_id "Ledus.S1G406500.t1"; gene_id "Ledus.S1G406500"
Ledus.S1	AUGUSTUS	stop_codon	32844518	32844520	.	+	0	transcript_id "Ledus.S1G406500.t1"; gene_id "Ledus.S1G406500"
# This transcript jg5661.t2 is derived from g3100.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5662.t1 is derived from g3101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25690536	25691655	.	+	.	Ledus.S1G308300
Ledus.S1	AUGUSTUS	transcript	25690536	25691655	.	+	.	transcript_id "Ledus.S1G308300.t1"; gene_id "Ledus.S1G308300"
Ledus.S1	AUGUSTUS	start_codon	25690536	25690538	.	+	0	transcript_id "Ledus.S1G308300.t1"; gene_id "Ledus.S1G308300"
Ledus.S1	AUGUSTUS	CDS	25690536	25690766	0.91	+	0	transcript_id "Ledus.S1G308300.t1"; gene_id "Ledus.S1G308300"
Ledus.S1	AUGUSTUS	exon	25690536	25690766	.	+	.	transcript_id "Ledus.S1G308300.t1"; gene_id "Ledus.S1G308300"
Ledus.S1	AUGUSTUS	intron	25690767	25690841	.	+	.	transcript_id "Ledus.S1G308300.t1"; gene_id "Ledus.S1G308300"
Ledus.S1	AUGUSTUS	CDS	25690842	25691033	1	+	0	transcript_id "Ledus.S1G308300.t1"; gene_id "Ledus.S1G308300"
Ledus.S1	AUGUSTUS	exon	25690842	25691033	.	+	.	transcript_id "Ledus.S1G308300.t1"; gene_id "Ledus.S1G308300"
Ledus.S1	AUGUSTUS	intron	25691034	25691103	.	+	.	transcript_id "Ledus.S1G308300.t1"; gene_id "Ledus.S1G308300"
Ledus.S1	AUGUSTUS	CDS	25691104	25691655	1	+	0	transcript_id "Ledus.S1G308300.t1"; gene_id "Ledus.S1G308300"
Ledus.S1	AUGUSTUS	exon	25691104	25691655	.	+	.	transcript_id "Ledus.S1G308300.t1"; gene_id "Ledus.S1G308300"
Ledus.S1	AUGUSTUS	stop_codon	25691656	25691658	.	+	0	transcript_id "Ledus.S1G308300.t1"; gene_id "Ledus.S1G308300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2856.t1 is derived from g290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4212287	4216766	.	+	.	Ledus.S1G027700
Ledus.S1	AUGUSTUS	transcript	4212287	4216766	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	start_codon	4212287	4212289	.	+	0	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	CDS	4212287	4212620	0.51	+	0	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	exon	4212287	4212620	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	intron	4212621	4212860	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	CDS	4212861	4213252	1	+	2	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	exon	4212861	4213252	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	intron	4213253	4213474	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	CDS	4213475	4213553	1	+	0	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	exon	4213475	4213553	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	intron	4213554	4213667	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	CDS	4213668	4213798	0.86	+	2	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	exon	4213668	4213798	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	intron	4213799	4213909	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	CDS	4213910	4215304	0.62	+	0	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	exon	4213910	4215304	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	intron	4215305	4215376	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	CDS	4215377	4215394	0.36	+	0	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	exon	4215377	4215394	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	intron	4215395	4215528	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	CDS	4215529	4215615	1	+	0	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	exon	4215529	4215615	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	intron	4215616	4215928	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	CDS	4215929	4216000	1	+	0	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	exon	4215929	4216000	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	intron	4216001	4216095	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	CDS	4216096	4216140	1	+	0	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	exon	4216096	4216140	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	intron	4216141	4216234	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	CDS	4216235	4216327	1	+	0	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	exon	4216235	4216327	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	intron	4216328	4216475	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	CDS	4216476	4216766	0.85	+	0	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	exon	4216476	4216766	.	+	.	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
Ledus.S1	AUGUSTUS	stop_codon	4216767	4216769	.	+	0	transcript_id "Ledus.S1G027700.t1"; gene_id "Ledus.S1G027700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11375.t1 is derived from g4993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3879862	3880170	.	-	.	Ledus.S4G053100
Ledus.S4	AUGUSTUS	transcript	3879862	3880170	.	-	.	transcript_id "Ledus.S4G053100.t1"; gene_id "Ledus.S4G053100"
Ledus.S4	AUGUSTUS	stop_codon	3879859	3879861	.	-	0	transcript_id "Ledus.S4G053100.t1"; gene_id "Ledus.S4G053100"
Ledus.S4	AUGUSTUS	CDS	3879862	3880170	1	-	0	transcript_id "Ledus.S4G053100.t1"; gene_id "Ledus.S4G053100"
Ledus.S4	AUGUSTUS	exon	3879862	3880170	.	-	.	transcript_id "Ledus.S4G053100.t1"; gene_id "Ledus.S4G053100"
Ledus.S4	AUGUSTUS	start_codon	3880168	3880170	.	-	0	transcript_id "Ledus.S4G053100.t1"; gene_id "Ledus.S4G053100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12765.t1 is derived from g6387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14354206	14357187	.	-	.	Ledus.S4G192100
Ledus.S4	AUGUSTUS	transcript	14354206	14357187	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	stop_codon	14354203	14354205	.	-	0	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	CDS	14354206	14354216	0.69	-	2	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	exon	14354206	14354216	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	intron	14354217	14354338	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	CDS	14354339	14354567	0.71	-	0	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	exon	14354339	14354567	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	intron	14354568	14354672	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	CDS	14354673	14354852	1	-	0	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	exon	14354673	14354852	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	intron	14354853	14355001	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	CDS	14355002	14355070	1	-	0	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	exon	14355002	14355070	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	intron	14355071	14355153	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	CDS	14355154	14355201	1	-	0	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	exon	14355154	14355201	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	intron	14355202	14355469	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	CDS	14355470	14355566	1	-	1	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	exon	14355470	14355566	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	intron	14355567	14355665	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	CDS	14355666	14355745	1	-	0	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	exon	14355666	14355745	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	intron	14355746	14355881	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	CDS	14355882	14355953	1	-	0	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	exon	14355882	14355953	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	intron	14355954	14356072	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	CDS	14356073	14356167	1	-	2	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	exon	14356073	14356167	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	intron	14356168	14356286	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	CDS	14356287	14356368	1	-	0	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	exon	14356287	14356368	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	intron	14356369	14356458	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	CDS	14356459	14357187	0.73	-	0	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	exon	14356459	14357187	.	-	.	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
Ledus.S4	AUGUSTUS	start_codon	14357185	14357187	.	-	0	transcript_id "Ledus.S4G192100.t1"; gene_id "Ledus.S4G192100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1574.t1 is derived from g8435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11026915	11027613	.	+	.	Ledus.S2G145600
Ledus.S2	AUGUSTUS	transcript	11026915	11027613	.	+	.	transcript_id "Ledus.S2G145600.t1"; gene_id "Ledus.S2G145600"
Ledus.S2	AUGUSTUS	start_codon	11026915	11026917	.	+	0	transcript_id "Ledus.S2G145600.t1"; gene_id "Ledus.S2G145600"
Ledus.S2	AUGUSTUS	CDS	11026915	11027613	0.72	+	0	transcript_id "Ledus.S2G145600.t1"; gene_id "Ledus.S2G145600"
Ledus.S2	AUGUSTUS	exon	11026915	11027613	.	+	.	transcript_id "Ledus.S2G145600.t1"; gene_id "Ledus.S2G145600"
Ledus.S2	AUGUSTUS	stop_codon	11027614	11027616	.	+	0	transcript_id "Ledus.S2G145600.t1"; gene_id "Ledus.S2G145600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10727.t1 is derived from g11757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17387906	17392982	.	-	.	Ledus.S3G220400
Ledus.S3	AUGUSTUS	transcript	17387906	17392982	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	stop_codon	17387903	17387905	.	-	0	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17387906	17388241	0.68	-	0	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17387906	17388241	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17388242	17388319	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17388320	17388438	1	-	2	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17388320	17388438	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17388439	17388512	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17388513	17388678	1	-	0	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17388513	17388678	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17388679	17388758	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17388759	17388900	1	-	1	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17388759	17388900	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17388901	17388972	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17388973	17389151	1	-	0	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17388973	17389151	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17389152	17389251	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17389252	17389438	1	-	1	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17389252	17389438	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17389439	17389534	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17389535	17389644	1	-	0	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17389535	17389644	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17389645	17389753	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17389754	17390770	0.99	-	0	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17389754	17390770	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17390771	17390869	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17390870	17390986	1	-	0	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17390870	17390986	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17390987	17391071	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17391072	17391887	1	-	0	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17391072	17391887	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17391888	17392037	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17392038	17392132	1	-	2	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17392038	17392132	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17392133	17392386	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17392387	17392494	0.79	-	2	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17392387	17392494	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17392495	17392611	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17392612	17392682	0.45	-	1	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17392612	17392682	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17392683	17392781	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17392782	17392838	0.97	-	1	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17392782	17392838	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17392839	17392935	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17392936	17392982	0.61	-	0	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17392936	17392982	.	-	.	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	start_codon	17392980	17392982	.	-	0	transcript_id "Ledus.S3G220400.t1"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	transcript	17387906	17392982	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	stop_codon	17387903	17387905	.	-	0	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17387906	17388241	0.56	-	0	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17387906	17388241	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17388242	17388319	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17388320	17388438	1	-	2	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17388320	17388438	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17388439	17388512	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17388513	17388678	1	-	0	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17388513	17388678	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17388679	17388758	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17388759	17388900	1	-	1	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17388759	17388900	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17388901	17388972	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17388973	17389151	1	-	0	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17388973	17389151	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17389152	17389251	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17389252	17389438	1	-	1	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17389252	17389438	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17389439	17389534	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17389535	17389644	1	-	0	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17389535	17389644	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17389645	17389753	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17389754	17390770	1	-	0	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17389754	17390770	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17390771	17390869	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17390870	17390986	1	-	0	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17390870	17390986	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17390987	17391071	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17391072	17391887	1	-	0	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17391072	17391887	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17391888	17392037	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17392038	17392255	0.66	-	2	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17392038	17392255	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17392256	17392386	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17392387	17392494	0.49	-	2	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17392387	17392494	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17392495	17392611	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17392612	17392682	0.25	-	1	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17392612	17392682	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17392683	17392781	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17392782	17392838	0.98	-	1	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17392782	17392838	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	intron	17392839	17392935	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	CDS	17392936	17392982	0.64	-	0	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	exon	17392936	17392982	.	-	.	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
Ledus.S3	AUGUSTUS	start_codon	17392980	17392982	.	-	0	transcript_id "Ledus.S3G220400.t2"; gene_id "Ledus.S3G220400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7964.t1 is derived from g12635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8258732	8260012	.	+	.	Ledus.S5G074200
Ledus.S5	AUGUSTUS	transcript	8258732	8260012	.	+	.	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	start_codon	8258732	8258734	.	+	0	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	CDS	8258732	8258838	0.97	+	0	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	exon	8258732	8258838	.	+	.	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	intron	8258839	8259020	.	+	.	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	CDS	8259021	8259204	0.97	+	1	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	exon	8259021	8259204	.	+	.	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	intron	8259205	8259599	.	+	.	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	CDS	8259600	8259660	1	+	0	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	exon	8259600	8259660	.	+	.	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	intron	8259661	8259739	.	+	.	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	CDS	8259740	8259836	1	+	2	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	exon	8259740	8259836	.	+	.	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	intron	8259837	8259936	.	+	.	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	CDS	8259937	8260012	1	+	1	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	exon	8259937	8260012	.	+	.	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
Ledus.S5	AUGUSTUS	stop_codon	8260013	8260015	.	+	0	transcript_id "Ledus.S5G074200.t1"; gene_id "Ledus.S5G074200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9963.t1 is derived from g10993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11589599	11592098	.	-	.	Ledus.S3G144000
Ledus.S3	AUGUSTUS	transcript	11589599	11592098	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	stop_codon	11589596	11589598	.	-	0	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11589599	11589854	1	-	1	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11589599	11589854	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11589855	11589947	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11589948	11590178	1	-	1	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11589948	11590178	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11590179	11590259	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11590260	11590416	1	-	2	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11590260	11590416	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11590417	11590578	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11590579	11590686	1	-	2	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11590579	11590686	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11590687	11590771	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11590772	11591013	1	-	1	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11590772	11591013	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11591014	11591125	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11591126	11591289	1	-	0	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11591126	11591289	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11591290	11591681	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11591682	11592098	0.39	-	0	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11591682	11592098	.	-	.	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	start_codon	11592096	11592098	.	-	0	transcript_id "Ledus.S3G144000.t1"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	transcript	11589599	11592098	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	stop_codon	11589596	11589598	.	-	0	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11589599	11589854	1	-	1	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11589599	11589854	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11589855	11589947	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11589948	11590178	1	-	1	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11589948	11590178	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11590179	11590259	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11590260	11590416	1	-	2	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11590260	11590416	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11590417	11590578	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11590579	11590686	1	-	2	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11590579	11590686	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11590687	11590771	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11590772	11591013	1	-	1	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11590772	11591013	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11591014	11591125	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11591126	11591248	0.86	-	1	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11591126	11591248	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11591249	11591342	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11591343	11591395	0.88	-	0	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11591343	11591395	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	intron	11591396	11591681	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	CDS	11591682	11592098	0.41	-	0	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	exon	11591682	11592098	.	-	.	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
Ledus.S3	AUGUSTUS	start_codon	11592096	11592098	.	-	0	transcript_id "Ledus.S3G144000.t2"; gene_id "Ledus.S3G144000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5512.t1 is derived from g2951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24718817	24721313	.	+	.	Ledus.S1G293300
Ledus.S1	AUGUSTUS	transcript	24718817	24721313	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	start_codon	24718817	24718819	.	+	0	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	CDS	24718817	24718881	0.82	+	0	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	exon	24718817	24718881	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	intron	24718882	24719298	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	CDS	24719299	24719311	0.89	+	1	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	exon	24719299	24719311	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	intron	24719312	24719492	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	CDS	24719493	24719587	1	+	0	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	exon	24719493	24719587	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	intron	24719588	24720116	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	CDS	24720117	24720484	0.95	+	1	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	exon	24720117	24720484	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	intron	24720485	24720557	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	CDS	24720558	24720588	1	+	2	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	exon	24720558	24720588	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	intron	24720589	24720675	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	CDS	24720676	24720722	0.84	+	1	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	exon	24720676	24720722	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	intron	24720723	24721006	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	CDS	24721007	24721088	0.92	+	2	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	exon	24721007	24721088	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	intron	24721089	24721306	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	CDS	24721307	24721313	0.96	+	1	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	exon	24721307	24721313	.	+	.	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
Ledus.S1	AUGUSTUS	stop_codon	24721314	24721316	.	+	0	transcript_id "Ledus.S1G293300.t1"; gene_id "Ledus.S1G293300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg554.t1 is derived from g7415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3250571	3253697	.	+	.	Ledus.S2G043600
Ledus.S2	AUGUSTUS	transcript	3250571	3253697	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	start_codon	3250571	3250573	.	+	0	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3250571	3250595	0.48	+	0	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3250571	3250595	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	intron	3250596	3250679	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3250680	3250740	0.32	+	2	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3250680	3250740	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	intron	3250741	3250840	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3250841	3250928	0.27	+	1	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3250841	3250928	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	intron	3250929	3251050	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3251051	3251281	1	+	0	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3251051	3251281	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	intron	3251282	3251423	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3251424	3251480	1	+	0	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3251424	3251480	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	intron	3251481	3251693	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3251694	3251822	1	+	0	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3251694	3251822	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	intron	3251823	3251910	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3251911	3251988	1	+	0	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3251911	3251988	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	intron	3251989	3252107	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3252108	3252178	1	+	0	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3252108	3252178	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	intron	3252179	3252285	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3252286	3252338	0.45	+	1	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3252286	3252338	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	intron	3252339	3252442	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3252443	3252665	0.96	+	2	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3252443	3252665	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	intron	3252666	3252757	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3252758	3253163	0.95	+	1	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3252758	3253163	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	intron	3253164	3253272	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3253273	3253416	0.91	+	0	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3253273	3253416	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	intron	3253417	3253550	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	CDS	3253551	3253697	0.87	+	0	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	exon	3253551	3253697	.	+	.	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
Ledus.S2	AUGUSTUS	stop_codon	3253698	3253700	.	+	0	transcript_id "Ledus.S2G043600.t1"; gene_id "Ledus.S2G043600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5117.t1 is derived from g2556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21787954	21794747	.	-	.	Ledus.S1G253800
Ledus.S1	AUGUSTUS	transcript	21787954	21794747	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	stop_codon	21787951	21787953	.	-	0	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21787954	21787996	0.94	-	1	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21787954	21787996	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21787997	21788146	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21788147	21788188	0.91	-	1	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21788147	21788188	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21788189	21788253	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21788254	21788272	0.92	-	2	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21788254	21788272	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21788273	21788357	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21788358	21788399	0.91	-	2	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21788358	21788399	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21788400	21788648	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21788649	21788705	0.83	-	2	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21788649	21788705	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21788706	21789137	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21789138	21790169	0.99	-	2	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21789138	21790169	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21790170	21790250	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21790251	21790479	0.99	-	0	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21790251	21790479	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21790480	21790595	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21790596	21790676	1	-	0	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21790596	21790676	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21790677	21790839	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21790840	21790944	1	-	0	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21790840	21790944	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21790945	21791112	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21791113	21791280	1	-	0	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21791113	21791280	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21791281	21791362	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21791363	21791470	1	-	0	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21791363	21791470	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21791471	21791601	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21791602	21791675	1	-	2	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21791602	21791675	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21791676	21791758	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21791759	21791834	1	-	0	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21791759	21791834	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21791835	21791938	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21791939	21792026	0.99	-	1	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21791939	21792026	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21792027	21792143	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21792144	21792206	0.94	-	1	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21792144	21792206	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21792207	21792365	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21792366	21792505	1	-	0	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21792366	21792505	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21792506	21792655	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21792656	21792752	1	-	1	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21792656	21792752	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21792753	21792844	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21792845	21792905	1	-	2	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21792845	21792905	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21792906	21793137	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21793138	21793189	1	-	0	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21793138	21793189	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21793190	21794339	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21794340	21794420	1	-	0	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21794340	21794420	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	intron	21794421	21794711	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	CDS	21794712	21794747	0.49	-	0	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	exon	21794712	21794747	.	-	.	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
Ledus.S1	AUGUSTUS	start_codon	21794745	21794747	.	-	0	transcript_id "Ledus.S1G253800.t1"; gene_id "Ledus.S1G253800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg524.t1 is derived from g7385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3040703	3046926	.	+	.	Ledus.S2G040600
Ledus.S2	AUGUSTUS	transcript	3040703	3046926	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	start_codon	3040703	3040705	.	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3040703	3040888	0.92	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3040703	3040888	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3040889	3040978	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3040979	3041170	0.97	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3040979	3041170	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3041171	3041267	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3041268	3041462	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3041268	3041462	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3041463	3041622	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3041623	3041790	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3041623	3041790	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3041791	3041935	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3041936	3042199	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3041936	3042199	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3042200	3042283	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3042284	3042422	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3042284	3042422	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3042423	3042500	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3042501	3042692	1	+	2	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3042501	3042692	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3042693	3042774	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3042775	3042920	1	+	2	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3042775	3042920	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3042921	3043013	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3043014	3043145	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3043014	3043145	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3043146	3043239	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3043240	3043512	0.99	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3043240	3043512	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3043513	3043592	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3043593	3043772	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3043593	3043772	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3043773	3043901	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3043902	3044017	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3043902	3044017	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3044018	3044100	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3044101	3044251	1	+	1	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3044101	3044251	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3044252	3044388	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3044389	3044507	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3044389	3044507	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3044508	3044595	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3044596	3044800	1	+	1	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3044596	3044800	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3044801	3044879	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3044880	3045038	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3044880	3045038	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3045039	3045128	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3045129	3045250	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3045129	3045250	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3045251	3045409	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3045410	3045518	1	+	1	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3045410	3045518	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3045519	3045691	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3045692	3045828	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3045692	3045828	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3045829	3045916	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3045917	3046070	1	+	1	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3045917	3046070	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3046071	3046150	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3046151	3046288	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3046151	3046288	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3046289	3046371	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3046372	3046473	1	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3046372	3046473	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3046474	3046551	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3046552	3046622	0.99	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3046552	3046622	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3046623	3046847	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3046848	3046926	0.99	+	1	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3046848	3046926	.	+	.	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	stop_codon	3046927	3046929	.	+	0	transcript_id "Ledus.S2G040600.t1"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	transcript	3040703	3046926	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	start_codon	3040703	3040705	.	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3040703	3040888	0.82	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3040703	3040888	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3040889	3040978	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3040979	3041170	0.94	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3040979	3041170	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3041171	3041267	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3041268	3041462	0.99	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3041268	3041462	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3041463	3041629	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3041630	3041689	0.93	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3041630	3041689	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3041690	3041766	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3041767	3041790	0.54	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3041767	3041790	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3041791	3041935	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3041936	3042199	1	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3041936	3042199	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3042200	3042283	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3042284	3042422	1	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3042284	3042422	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3042423	3042500	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3042501	3042692	1	+	2	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3042501	3042692	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3042693	3042774	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3042775	3042920	1	+	2	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3042775	3042920	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3042921	3043013	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3043014	3043145	1	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3043014	3043145	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3043146	3043239	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3043240	3043512	0.97	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3043240	3043512	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3043513	3043592	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3043593	3043772	1	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3043593	3043772	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3043773	3043901	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3043902	3044017	1	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3043902	3044017	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3044018	3044100	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3044101	3044251	1	+	1	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3044101	3044251	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3044252	3044388	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3044389	3044507	1	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3044389	3044507	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3044508	3044595	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3044596	3044800	1	+	1	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3044596	3044800	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3044801	3044879	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3044880	3045038	1	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3044880	3045038	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3045039	3045128	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3045129	3045250	1	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3045129	3045250	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3045251	3045409	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3045410	3045518	1	+	1	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3045410	3045518	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3045519	3045691	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3045692	3045828	1	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3045692	3045828	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3045829	3045916	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3045917	3046070	1	+	1	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3045917	3046070	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3046071	3046150	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3046151	3046288	1	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3046151	3046288	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3046289	3046371	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3046372	3046473	1	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3046372	3046473	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3046474	3046551	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3046552	3046622	0.99	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3046552	3046622	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	intron	3046623	3046847	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	CDS	3046848	3046926	0.99	+	1	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	exon	3046848	3046926	.	+	.	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
Ledus.S2	AUGUSTUS	stop_codon	3046927	3046929	.	+	0	transcript_id "Ledus.S2G040600.t2"; gene_id "Ledus.S2G040600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7112.t1 is derived from g6643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1615765	1616706	.	-	.	Ledus.C7G017300
Ledus.C7	AUGUSTUS	transcript	1615765	1616706	.	-	.	transcript_id "Ledus.C7G017300.t1"; gene_id "Ledus.C7G017300"
Ledus.C7	AUGUSTUS	stop_codon	1615762	1615764	.	-	0	transcript_id "Ledus.C7G017300.t1"; gene_id "Ledus.C7G017300"
Ledus.C7	AUGUSTUS	CDS	1615765	1616337	0.54	-	0	transcript_id "Ledus.C7G017300.t1"; gene_id "Ledus.C7G017300"
Ledus.C7	AUGUSTUS	exon	1615765	1616337	.	-	.	transcript_id "Ledus.C7G017300.t1"; gene_id "Ledus.C7G017300"
Ledus.C7	AUGUSTUS	intron	1616338	1616622	.	-	.	transcript_id "Ledus.C7G017300.t1"; gene_id "Ledus.C7G017300"
Ledus.C7	AUGUSTUS	CDS	1616623	1616706	0.94	-	0	transcript_id "Ledus.C7G017300.t1"; gene_id "Ledus.C7G017300"
Ledus.C7	AUGUSTUS	exon	1616623	1616706	.	-	.	transcript_id "Ledus.C7G017300.t1"; gene_id "Ledus.C7G017300"
Ledus.C7	AUGUSTUS	start_codon	1616704	1616706	.	-	0	transcript_id "Ledus.C7G017300.t1"; gene_id "Ledus.C7G017300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7102.t1 is derived from g6633.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1550300	1553651	.	-	.	Ledus.C7G016300
Ledus.C7	AUGUSTUS	transcript	1550300	1553651	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	stop_codon	1550297	1550299	.	-	0	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	CDS	1550300	1550779	0.99	-	0	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	exon	1550300	1550779	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	intron	1550780	1550870	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	CDS	1550871	1551005	1	-	0	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	exon	1550871	1551005	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	intron	1551006	1551154	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	CDS	1551155	1551676	0.99	-	0	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	exon	1551155	1551676	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	intron	1551677	1551869	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	CDS	1551870	1552028	0.97	-	0	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	exon	1551870	1552028	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	intron	1552029	1552111	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	CDS	1552112	1552564	0.62	-	0	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	exon	1552112	1552564	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	intron	1552565	1552651	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	CDS	1552652	1552827	1	-	2	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	exon	1552652	1552827	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	intron	1552828	1553040	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	CDS	1553041	1553175	1	-	2	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	exon	1553041	1553175	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	intron	1553176	1553260	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	CDS	1553261	1553380	1	-	2	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	exon	1553261	1553380	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	intron	1553381	1553469	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	CDS	1553470	1553482	0.97	-	0	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	exon	1553470	1553482	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	intron	1553483	1553576	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	CDS	1553577	1553651	0.87	-	0	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	exon	1553577	1553651	.	-	.	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
Ledus.C7	AUGUSTUS	start_codon	1553649	1553651	.	-	0	transcript_id "Ledus.C7G016300.t1"; gene_id "Ledus.C7G016300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4822.t1 is derived from g2260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19959591	19960190	.	-	.	Ledus.S1G224300
Ledus.S1	AUGUSTUS	transcript	19959591	19960190	.	-	.	transcript_id "Ledus.S1G224300.t1"; gene_id "Ledus.S1G224300"
Ledus.S1	AUGUSTUS	stop_codon	19959588	19959590	.	-	0	transcript_id "Ledus.S1G224300.t1"; gene_id "Ledus.S1G224300"
Ledus.S1	AUGUSTUS	CDS	19959591	19959947	0.89	-	0	transcript_id "Ledus.S1G224300.t1"; gene_id "Ledus.S1G224300"
Ledus.S1	AUGUSTUS	exon	19959591	19959947	.	-	.	transcript_id "Ledus.S1G224300.t1"; gene_id "Ledus.S1G224300"
Ledus.S1	AUGUSTUS	intron	19959948	19960040	.	-	.	transcript_id "Ledus.S1G224300.t1"; gene_id "Ledus.S1G224300"
Ledus.S1	AUGUSTUS	CDS	19960041	19960190	0.73	-	0	transcript_id "Ledus.S1G224300.t1"; gene_id "Ledus.S1G224300"
Ledus.S1	AUGUSTUS	exon	19960041	19960190	.	-	.	transcript_id "Ledus.S1G224300.t1"; gene_id "Ledus.S1G224300"
Ledus.S1	AUGUSTUS	start_codon	19960188	19960190	.	-	0	transcript_id "Ledus.S1G224300.t1"; gene_id "Ledus.S1G224300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12235.t1 is derived from g5855.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10585647	10586899	.	+	.	Ledus.S4G139100
Ledus.S4	AUGUSTUS	transcript	10585647	10586899	.	+	.	transcript_id "Ledus.S4G139100.t1"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	start_codon	10585647	10585649	.	+	0	transcript_id "Ledus.S4G139100.t1"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	CDS	10585647	10586491	0.82	+	0	transcript_id "Ledus.S4G139100.t1"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	exon	10585647	10586491	.	+	.	transcript_id "Ledus.S4G139100.t1"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	intron	10586492	10586562	.	+	.	transcript_id "Ledus.S4G139100.t1"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	CDS	10586563	10586899	0.55	+	1	transcript_id "Ledus.S4G139100.t1"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	exon	10586563	10586899	.	+	.	transcript_id "Ledus.S4G139100.t1"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	stop_codon	10586900	10586902	.	+	0	transcript_id "Ledus.S4G139100.t1"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	transcript	10585647	10586899	.	+	.	transcript_id "Ledus.S4G139100.t2"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	start_codon	10585647	10585649	.	+	0	transcript_id "Ledus.S4G139100.t2"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	CDS	10585647	10586491	0.8	+	0	transcript_id "Ledus.S4G139100.t2"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	exon	10585647	10586491	.	+	.	transcript_id "Ledus.S4G139100.t2"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	intron	10586492	10586571	.	+	.	transcript_id "Ledus.S4G139100.t2"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	CDS	10586572	10586899	0.56	+	1	transcript_id "Ledus.S4G139100.t2"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	exon	10586572	10586899	.	+	.	transcript_id "Ledus.S4G139100.t2"; gene_id "Ledus.S4G139100"
Ledus.S4	AUGUSTUS	stop_codon	10586900	10586902	.	+	0	transcript_id "Ledus.S4G139100.t2"; gene_id "Ledus.S4G139100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8955.t1 is derived from g9985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3412432	3414592	.	+	.	Ledus.S3G043200
Ledus.S3	AUGUSTUS	transcript	3412432	3414592	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	start_codon	3412432	3412434	.	+	0	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	CDS	3412432	3412538	0.89	+	0	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	exon	3412432	3412538	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	intron	3412539	3412719	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	CDS	3412720	3412763	0.97	+	1	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	exon	3412720	3412763	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	intron	3412764	3412873	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	CDS	3412874	3413026	0.99	+	2	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	exon	3412874	3413026	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	intron	3413027	3413159	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	CDS	3413160	3413273	1	+	2	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	exon	3413160	3413273	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	intron	3413274	3413497	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	CDS	3413498	3413625	1	+	2	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	exon	3413498	3413625	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	intron	3413626	3413738	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	CDS	3413739	3413861	1	+	0	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	exon	3413739	3413861	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	intron	3413862	3413994	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	CDS	3413995	3414111	1	+	0	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	exon	3413995	3414111	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	intron	3414112	3414281	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	CDS	3414282	3414403	1	+	0	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	exon	3414282	3414403	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	intron	3414404	3414519	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	CDS	3414520	3414592	1	+	1	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	exon	3414520	3414592	.	+	.	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
Ledus.S3	AUGUSTUS	stop_codon	3414593	3414595	.	+	0	transcript_id "Ledus.S3G043200.t1"; gene_id "Ledus.S3G043200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5030.t1 is derived from g2469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21208930	21209844	.	+	.	Ledus.S1G245100
Ledus.S1	AUGUSTUS	transcript	21208930	21209844	.	+	.	transcript_id "Ledus.S1G245100.t1"; gene_id "Ledus.S1G245100"
Ledus.S1	AUGUSTUS	start_codon	21208930	21208932	.	+	0	transcript_id "Ledus.S1G245100.t1"; gene_id "Ledus.S1G245100"
Ledus.S1	AUGUSTUS	CDS	21208930	21209844	1	+	0	transcript_id "Ledus.S1G245100.t1"; gene_id "Ledus.S1G245100"
Ledus.S1	AUGUSTUS	exon	21208930	21209844	.	+	.	transcript_id "Ledus.S1G245100.t1"; gene_id "Ledus.S1G245100"
Ledus.S1	AUGUSTUS	stop_codon	21209845	21209847	.	+	0	transcript_id "Ledus.S1G245100.t1"; gene_id "Ledus.S1G245100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6276.t1 is derived from g3719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30092191	30094230	.	+	.	Ledus.S1G369700
Ledus.S1	AUGUSTUS	transcript	30092191	30094230	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	start_codon	30092191	30092193	.	+	0	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	CDS	30092191	30092511	0.76	+	0	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	exon	30092191	30092511	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	intron	30092512	30092602	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	CDS	30092603	30092654	1	+	0	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	exon	30092603	30092654	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	intron	30092655	30092738	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	CDS	30092739	30092971	1	+	2	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	exon	30092739	30092971	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	intron	30092972	30093069	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	CDS	30093070	30093288	1	+	0	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	exon	30093070	30093288	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	intron	30093289	30093367	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	CDS	30093368	30093449	0.99	+	0	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	exon	30093368	30093449	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	intron	30093450	30093533	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	CDS	30093534	30093743	0.86	+	2	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	exon	30093534	30093743	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	intron	30093744	30093835	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	CDS	30093836	30093974	0.83	+	2	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	exon	30093836	30093974	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	intron	30093975	30094076	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	CDS	30094077	30094230	0.71	+	1	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	exon	30094077	30094230	.	+	.	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
Ledus.S1	AUGUSTUS	stop_codon	30094231	30094233	.	+	0	transcript_id "Ledus.S1G369700.t1"; gene_id "Ledus.S1G369700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4447.t1 is derived from g1883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17143323	17144323	.	-	.	Ledus.S1G186800
Ledus.S1	AUGUSTUS	transcript	17143323	17144323	.	-	.	transcript_id "Ledus.S1G186800.t1"; gene_id "Ledus.S1G186800"
Ledus.S1	AUGUSTUS	stop_codon	17143320	17143322	.	-	0	transcript_id "Ledus.S1G186800.t1"; gene_id "Ledus.S1G186800"
Ledus.S1	AUGUSTUS	CDS	17143323	17143454	0.91	-	0	transcript_id "Ledus.S1G186800.t1"; gene_id "Ledus.S1G186800"
Ledus.S1	AUGUSTUS	exon	17143323	17143454	.	-	.	transcript_id "Ledus.S1G186800.t1"; gene_id "Ledus.S1G186800"
Ledus.S1	AUGUSTUS	intron	17143455	17143574	.	-	.	transcript_id "Ledus.S1G186800.t1"; gene_id "Ledus.S1G186800"
Ledus.S1	AUGUSTUS	CDS	17143575	17143724	1	-	0	transcript_id "Ledus.S1G186800.t1"; gene_id "Ledus.S1G186800"
Ledus.S1	AUGUSTUS	exon	17143575	17143724	.	-	.	transcript_id "Ledus.S1G186800.t1"; gene_id "Ledus.S1G186800"
Ledus.S1	AUGUSTUS	intron	17143725	17144197	.	-	.	transcript_id "Ledus.S1G186800.t1"; gene_id "Ledus.S1G186800"
Ledus.S1	AUGUSTUS	CDS	17144198	17144323	1	-	0	transcript_id "Ledus.S1G186800.t1"; gene_id "Ledus.S1G186800"
Ledus.S1	AUGUSTUS	exon	17144198	17144323	.	-	.	transcript_id "Ledus.S1G186800.t1"; gene_id "Ledus.S1G186800"
Ledus.S1	AUGUSTUS	start_codon	17144321	17144323	.	-	0	transcript_id "Ledus.S1G186800.t1"; gene_id "Ledus.S1G186800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3035.t1 is derived from g470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5432152	5433027	.	+	.	Ledus.S1G045600
Ledus.S1	AUGUSTUS	transcript	5432152	5433027	.	+	.	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	start_codon	5432152	5432154	.	+	0	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	CDS	5432152	5432187	0.68	+	0	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	exon	5432152	5432187	.	+	.	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	intron	5432188	5432282	.	+	.	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	CDS	5432283	5432341	0.93	+	0	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	exon	5432283	5432341	.	+	.	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	intron	5432342	5432454	.	+	.	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	CDS	5432455	5432482	0.97	+	1	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	exon	5432455	5432482	.	+	.	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	intron	5432483	5432627	.	+	.	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	CDS	5432628	5432727	1	+	0	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	exon	5432628	5432727	.	+	.	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	intron	5432728	5432899	.	+	.	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	CDS	5432900	5433027	0.74	+	2	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	exon	5432900	5433027	.	+	.	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
Ledus.S1	AUGUSTUS	stop_codon	5433028	5433030	.	+	0	transcript_id "Ledus.S1G045600.t1"; gene_id "Ledus.S1G045600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5542.t1 is derived from g2981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25048911	25050312	.	-	.	Ledus.S1G296300
Ledus.S1	AUGUSTUS	transcript	25048911	25050312	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	stop_codon	25048908	25048910	.	-	0	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	CDS	25048911	25048978	0.76	-	2	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	exon	25048911	25048978	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	intron	25048979	25049153	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	CDS	25049154	25049159	0.5	-	2	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	exon	25049154	25049159	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	intron	25049160	25049218	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	CDS	25049219	25049284	0.42	-	2	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	exon	25049219	25049284	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	intron	25049285	25049372	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	CDS	25049373	25049424	1	-	0	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	exon	25049373	25049424	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	intron	25049425	25049587	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	CDS	25049588	25049752	0.94	-	0	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	exon	25049588	25049752	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	intron	25049753	25049856	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	CDS	25049857	25050030	1	-	0	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	exon	25049857	25050030	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	intron	25050031	25050111	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	CDS	25050112	25050312	0.81	-	0	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	exon	25050112	25050312	.	-	.	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
Ledus.S1	AUGUSTUS	start_codon	25050310	25050312	.	-	0	transcript_id "Ledus.S1G296300.t1"; gene_id "Ledus.S1G296300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8196.t1 is derived from g12867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9791849	9792058	.	+	.	Ledus.S5G097400
Ledus.S5	AUGUSTUS	transcript	9791849	9792058	.	+	.	transcript_id "Ledus.S5G097400.t1"; gene_id "Ledus.S5G097400"
Ledus.S5	AUGUSTUS	start_codon	9791849	9791851	.	+	0	transcript_id "Ledus.S5G097400.t1"; gene_id "Ledus.S5G097400"
Ledus.S5	AUGUSTUS	CDS	9791849	9792058	0.44	+	0	transcript_id "Ledus.S5G097400.t1"; gene_id "Ledus.S5G097400"
Ledus.S5	AUGUSTUS	exon	9791849	9792058	.	+	.	transcript_id "Ledus.S5G097400.t1"; gene_id "Ledus.S5G097400"
Ledus.S5	AUGUSTUS	stop_codon	9792059	9792061	.	+	0	transcript_id "Ledus.S5G097400.t1"; gene_id "Ledus.S5G097400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5568.t1 is derived from g3007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25175147	25176598	.	-	.	Ledus.S1G298900
Ledus.S1	AUGUSTUS	transcript	25175147	25176598	.	-	.	transcript_id "Ledus.S1G298900.t1"; gene_id "Ledus.S1G298900"
Ledus.S1	AUGUSTUS	stop_codon	25175144	25175146	.	-	0	transcript_id "Ledus.S1G298900.t1"; gene_id "Ledus.S1G298900"
Ledus.S1	AUGUSTUS	CDS	25175147	25176598	1	-	0	transcript_id "Ledus.S1G298900.t1"; gene_id "Ledus.S1G298900"
Ledus.S1	AUGUSTUS	exon	25175147	25176598	.	-	.	transcript_id "Ledus.S1G298900.t1"; gene_id "Ledus.S1G298900"
Ledus.S1	AUGUSTUS	start_codon	25176596	25176598	.	-	0	transcript_id "Ledus.S1G298900.t1"; gene_id "Ledus.S1G298900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6451.t1 is derived from g3894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31295171	31298404	.	-	.	Ledus.S1G387200
Ledus.S1	AUGUSTUS	transcript	31295171	31298404	.	-	.	transcript_id "Ledus.S1G387200.t1"; gene_id "Ledus.S1G387200"
Ledus.S1	AUGUSTUS	stop_codon	31295168	31295170	.	-	0	transcript_id "Ledus.S1G387200.t1"; gene_id "Ledus.S1G387200"
Ledus.S1	AUGUSTUS	CDS	31295171	31297908	0.97	-	2	transcript_id "Ledus.S1G387200.t1"; gene_id "Ledus.S1G387200"
Ledus.S1	AUGUSTUS	exon	31295171	31297908	.	-	.	transcript_id "Ledus.S1G387200.t1"; gene_id "Ledus.S1G387200"
Ledus.S1	AUGUSTUS	intron	31297909	31298250	.	-	.	transcript_id "Ledus.S1G387200.t1"; gene_id "Ledus.S1G387200"
Ledus.S1	AUGUSTUS	CDS	31298251	31298404	0.95	-	0	transcript_id "Ledus.S1G387200.t1"; gene_id "Ledus.S1G387200"
Ledus.S1	AUGUSTUS	exon	31298251	31298404	.	-	.	transcript_id "Ledus.S1G387200.t1"; gene_id "Ledus.S1G387200"
Ledus.S1	AUGUSTUS	start_codon	31298402	31298404	.	-	0	transcript_id "Ledus.S1G387200.t1"; gene_id "Ledus.S1G387200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7104.t1 is derived from g6635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1560313	1563331	.	+	.	Ledus.C7G016500
Ledus.C7	AUGUSTUS	transcript	1560313	1563331	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	start_codon	1560313	1560315	.	+	0	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	CDS	1560313	1560818	0.93	+	0	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	exon	1560313	1560818	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	intron	1560819	1560941	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	CDS	1560942	1561091	0.99	+	1	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	exon	1560942	1561091	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	intron	1561092	1561214	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	CDS	1561215	1561442	0.97	+	1	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	exon	1561215	1561442	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	intron	1561443	1561566	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	CDS	1561567	1561777	0.97	+	1	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	exon	1561567	1561777	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	intron	1561778	1561940	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	CDS	1561941	1562077	1	+	0	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	exon	1561941	1562077	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	intron	1562078	1562430	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	CDS	1562431	1562517	1	+	1	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	exon	1562431	1562517	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	intron	1562518	1562681	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	CDS	1562682	1562748	0.76	+	1	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	exon	1562682	1562748	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	intron	1562749	1562869	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	CDS	1562870	1563331	0.75	+	0	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	exon	1562870	1563331	.	+	.	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
Ledus.C7	AUGUSTUS	stop_codon	1563332	1563334	.	+	0	transcript_id "Ledus.C7G016500.t1"; gene_id "Ledus.C7G016500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7252.t1 is derived from g11923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	472545	478121	.	+	.	Ledus.S5G003000
Ledus.S5	AUGUSTUS	transcript	472545	478121	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	start_codon	472545	472547	.	+	0	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	472545	472708	0.98	+	0	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	472545	472708	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	472709	472891	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	472892	473072	0.98	+	1	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	472892	473072	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	473073	473160	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	473161	473262	0.8	+	0	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	473161	473262	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	473263	473365	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	473366	473435	0.99	+	0	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	473366	473435	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	473436	473524	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	473525	473664	0.96	+	2	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	473525	473664	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	473665	473814	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	473815	473890	0.95	+	0	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	473815	473890	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	473891	473979	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	473980	474015	0.96	+	2	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	473980	474015	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	474016	474147	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	474148	474701	0.8	+	2	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	474148	474701	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	474702	474785	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	474786	474940	0.96	+	0	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	474786	474940	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	474941	475054	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	475055	475179	1	+	1	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	475055	475179	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	475180	475279	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	475280	475534	0.91	+	2	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	475280	475534	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	475535	475620	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	475621	476723	0.98	+	2	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	475621	476723	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	476724	476818	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	476819	476919	1	+	0	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	476819	476919	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	476920	477055	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	477056	477194	1	+	1	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	477056	477194	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	477195	477287	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	477288	477443	0.99	+	0	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	477288	477443	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	477444	477545	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	477546	477640	0.99	+	0	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	477546	477640	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	477641	477781	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	477782	477893	1	+	1	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	477782	477893	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	intron	477894	477977	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	CDS	477978	478121	0.87	+	0	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	exon	477978	478121	.	+	.	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
Ledus.S5	AUGUSTUS	stop_codon	478122	478124	.	+	0	transcript_id "Ledus.S5G003000.t1"; gene_id "Ledus.S5G003000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5781.t1 is derived from g3223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26729644	26731441	.	+	.	Ledus.S1G320200
Ledus.S1	AUGUSTUS	transcript	26729644	26731441	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	start_codon	26729644	26729646	.	+	0	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	CDS	26729644	26729768	0.38	+	0	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	exon	26729644	26729768	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	intron	26729769	26729897	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	CDS	26729898	26730339	0.74	+	1	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	exon	26729898	26730339	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	intron	26730340	26730466	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	CDS	26730467	26730587	1	+	0	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	exon	26730467	26730587	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	intron	26730588	26730689	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	CDS	26730690	26730786	1	+	2	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	exon	26730690	26730786	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	intron	26730787	26730900	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	CDS	26730901	26730940	0.97	+	1	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	exon	26730901	26730940	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	intron	26730941	26731061	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	CDS	26731062	26731145	0.97	+	0	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	exon	26731062	26731145	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	intron	26731146	26731279	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	CDS	26731280	26731441	1	+	0	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	exon	26731280	26731441	.	+	.	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
Ledus.S1	AUGUSTUS	stop_codon	26731442	26731444	.	+	0	transcript_id "Ledus.S1G320200.t1"; gene_id "Ledus.S1G320200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7546.t1 is derived from g12217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3815871	3816167	.	-	.	Ledus.S5G032400
Ledus.S5	AUGUSTUS	transcript	3815871	3816167	.	-	.	transcript_id "Ledus.S5G032400.t1"; gene_id "Ledus.S5G032400"
Ledus.S5	AUGUSTUS	stop_codon	3815868	3815870	.	-	0	transcript_id "Ledus.S5G032400.t1"; gene_id "Ledus.S5G032400"
Ledus.S5	AUGUSTUS	CDS	3815871	3816167	0.3	-	0	transcript_id "Ledus.S5G032400.t1"; gene_id "Ledus.S5G032400"
Ledus.S5	AUGUSTUS	exon	3815871	3816167	.	-	.	transcript_id "Ledus.S5G032400.t1"; gene_id "Ledus.S5G032400"
Ledus.S5	AUGUSTUS	start_codon	3816165	3816167	.	-	0	transcript_id "Ledus.S5G032400.t1"; gene_id "Ledus.S5G032400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8778.t1 is derived from g9808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1922468	1925719	.	-	.	Ledus.S3G025500
Ledus.S3	AUGUSTUS	transcript	1922468	1925719	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	stop_codon	1922465	1922467	.	-	0	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1922468	1923597	0.84	-	2	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1922468	1923597	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1923598	1923776	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1923777	1923870	1	-	0	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1923777	1923870	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1923871	1924012	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1924013	1924098	1	-	2	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1924013	1924098	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1924099	1924216	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1924217	1924268	1	-	0	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1924217	1924268	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1924269	1924354	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1924355	1924512	0.8	-	2	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1924355	1924512	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1924513	1924617	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1924618	1924708	0.75	-	0	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1924618	1924708	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1924709	1924845	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1924846	1925282	1	-	2	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1924846	1925282	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1925283	1925379	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1925380	1925588	1	-	1	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1925380	1925588	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1925589	1925660	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1925661	1925719	0.41	-	0	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1925661	1925719	.	-	.	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	start_codon	1925717	1925719	.	-	0	transcript_id "Ledus.S3G025500.t1"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	transcript	1922468	1925719	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	stop_codon	1922465	1922467	.	-	0	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1922468	1923392	0.17	-	1	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1922468	1923392	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1923393	1923514	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1923515	1923597	0.28	-	0	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1923515	1923597	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1923598	1923819	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1923820	1923870	0.87	-	0	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1923820	1923870	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1923871	1924012	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1924013	1924098	1	-	2	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1924013	1924098	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1924099	1924216	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1924217	1924268	1	-	0	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1924217	1924268	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1924269	1924354	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1924355	1924512	0.78	-	2	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1924355	1924512	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1924513	1924617	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1924618	1924708	0.9	-	0	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1924618	1924708	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1924709	1924845	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1924846	1925282	1	-	2	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1924846	1925282	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1925283	1925379	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1925380	1925588	1	-	1	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1925380	1925588	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	intron	1925589	1925660	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	CDS	1925661	1925719	0.35	-	0	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	exon	1925661	1925719	.	-	.	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
Ledus.S3	AUGUSTUS	start_codon	1925717	1925719	.	-	0	transcript_id "Ledus.S3G025500.t2"; gene_id "Ledus.S3G025500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg807.t1 is derived from g7668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5228395	5228769	.	-	.	Ledus.S2G068900
Ledus.S2	AUGUSTUS	transcript	5228395	5228769	.	-	.	transcript_id "Ledus.S2G068900.t1"; gene_id "Ledus.S2G068900"
Ledus.S2	AUGUSTUS	stop_codon	5228392	5228394	.	-	0	transcript_id "Ledus.S2G068900.t1"; gene_id "Ledus.S2G068900"
Ledus.S2	AUGUSTUS	CDS	5228395	5228769	0.98	-	0	transcript_id "Ledus.S2G068900.t1"; gene_id "Ledus.S2G068900"
Ledus.S2	AUGUSTUS	exon	5228395	5228769	.	-	.	transcript_id "Ledus.S2G068900.t1"; gene_id "Ledus.S2G068900"
Ledus.S2	AUGUSTUS	start_codon	5228767	5228769	.	-	0	transcript_id "Ledus.S2G068900.t1"; gene_id "Ledus.S2G068900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg6477.t1 is derived from g3920.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31482690	31490299	.	+	.	Ledus.S1G389800
Ledus.S1	AUGUSTUS	transcript	31482690	31490299	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	start_codon	31482690	31482692	.	+	0	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31482690	31482787	0.99	+	0	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31482690	31482787	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31482788	31482887	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31482888	31483036	0.71	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31482888	31483036	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31483037	31483137	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31483138	31483218	0.34	+	2	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31483138	31483218	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31483219	31483395	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31483396	31483421	0.21	+	2	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31483396	31483421	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31483422	31483509	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31483510	31483636	0.2	+	0	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31483510	31483636	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31483637	31484158	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31484159	31484193	1	+	2	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31484159	31484193	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31484194	31484337	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31484338	31484568	0.92	+	0	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31484338	31484568	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31484569	31484696	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31484697	31484903	1	+	0	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31484697	31484903	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31484904	31485049	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31485050	31485241	1	+	0	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31485050	31485241	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31485242	31485473	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31485474	31485745	0.97	+	0	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31485474	31485745	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31485746	31486208	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31486209	31486334	1	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31486209	31486334	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31486335	31486537	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31486538	31486642	0.48	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31486538	31486642	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31486643	31486741	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31486742	31486816	1	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31486742	31486816	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31486817	31486987	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31486988	31487056	1	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31486988	31487056	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31487057	31487155	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31487156	31487251	1	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31487156	31487251	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31487252	31487607	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31487608	31487709	1	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31487608	31487709	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31487710	31487863	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31487864	31487950	1	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31487864	31487950	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31487951	31488086	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488087	31488131	1	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488087	31488131	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31488132	31488224	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488225	31488305	1	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488225	31488305	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31488306	31488393	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488394	31488499	1	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488394	31488499	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31488500	31488595	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488596	31488857	1	+	0	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488596	31488857	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31488858	31488990	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488991	31489114	1	+	2	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488991	31489114	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31489115	31489252	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31489253	31489272	0.91	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31489253	31489272	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31489273	31489389	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31489390	31489546	0.85	+	2	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31489390	31489546	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31489547	31489661	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31489662	31489950	0.84	+	1	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31489662	31489950	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31489951	31490067	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31490068	31490140	1	+	0	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31490068	31490140	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31490141	31490216	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31490217	31490299	0.83	+	2	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31490217	31490299	.	+	.	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	stop_codon	31490300	31490302	.	+	0	transcript_id "Ledus.S1G389800.t1"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	transcript	31482690	31490299	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	start_codon	31482690	31482692	.	+	0	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31482690	31482787	0.97	+	0	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31482690	31482787	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31482788	31482887	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31482888	31483036	0.6	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31482888	31483036	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31483037	31483137	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31483138	31483218	0.3	+	2	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31483138	31483218	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31483219	31483395	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31483396	31483421	0.23	+	2	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31483396	31483421	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31483422	31483509	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31483510	31483636	0.24	+	0	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31483510	31483636	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31483637	31484158	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31484159	31484193	1	+	2	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31484159	31484193	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31484194	31484337	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31484338	31484568	0.91	+	0	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31484338	31484568	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31484569	31484696	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31484697	31484903	1	+	0	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31484697	31484903	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31484904	31485049	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31485050	31485241	1	+	0	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31485050	31485241	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31485242	31485473	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31485474	31485745	0.97	+	0	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31485474	31485745	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31485746	31486208	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31486209	31486334	1	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31486209	31486334	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31486335	31486537	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31486538	31486642	0.59	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31486538	31486642	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31486643	31486741	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31486742	31486816	1	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31486742	31486816	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31486817	31486987	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31486988	31487056	1	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31486988	31487056	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31487057	31487152	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31487153	31487251	1	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31487153	31487251	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31487252	31487607	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31487608	31487670	1	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31487608	31487670	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31487671	31487863	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31487864	31487950	1	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31487864	31487950	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31487951	31488086	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488087	31488131	1	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488087	31488131	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31488132	31488224	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488225	31488305	1	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488225	31488305	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31488306	31488393	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488394	31488499	1	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488394	31488499	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31488500	31488595	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488596	31488857	1	+	0	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488596	31488857	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31488858	31488990	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488991	31489114	1	+	2	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488991	31489114	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31489115	31489252	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31489253	31489272	0.91	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31489253	31489272	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31489273	31489389	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31489390	31489546	0.78	+	2	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31489390	31489546	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31489547	31489661	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31489662	31489950	0.77	+	1	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31489662	31489950	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31489951	31490067	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31490068	31490140	1	+	0	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31490068	31490140	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31490141	31490216	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31490217	31490299	0.8	+	2	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31490217	31490299	.	+	.	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	stop_codon	31490300	31490302	.	+	0	transcript_id "Ledus.S1G389800.t2"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	transcript	31482690	31490299	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	start_codon	31482690	31482692	.	+	0	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31482690	31482787	1	+	0	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31482690	31482787	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31482788	31482887	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31482888	31483036	0.64	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31482888	31483036	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31483037	31483137	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31483138	31483218	0.28	+	2	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31483138	31483218	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31483219	31483395	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31483396	31483421	0.14	+	2	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31483396	31483421	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31483422	31483509	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31483510	31483636	0.14	+	0	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31483510	31483636	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31483637	31484158	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31484159	31484193	1	+	2	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31484159	31484193	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31484194	31484337	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31484338	31484568	0.94	+	0	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31484338	31484568	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31484569	31484696	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31484697	31484903	1	+	0	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31484697	31484903	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31484904	31485049	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31485050	31485241	1	+	0	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31485050	31485241	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31485242	31485473	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31485474	31485745	1	+	0	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31485474	31485745	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31485746	31486208	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31486209	31486334	1	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31486209	31486334	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31486335	31486537	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31486538	31486642	0.57	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31486538	31486642	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31486643	31486741	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31486742	31486816	1	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31486742	31486816	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31486817	31486987	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31486988	31487056	1	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31486988	31487056	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31487057	31487155	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31487156	31487251	1	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31487156	31487251	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31487252	31487607	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31487608	31487670	1	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31487608	31487670	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31487671	31487863	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31487864	31487950	1	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31487864	31487950	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31487951	31488086	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488087	31488131	1	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488087	31488131	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31488132	31488224	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488225	31488305	1	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488225	31488305	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31488306	31488393	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488394	31488499	1	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488394	31488499	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31488500	31488595	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488596	31488857	0.98	+	0	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488596	31488857	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31488858	31488990	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31488991	31489114	1	+	2	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31488991	31489114	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31489115	31489252	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31489253	31489272	0.9	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31489253	31489272	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31489273	31489389	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31489390	31489546	0.8	+	2	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31489390	31489546	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31489547	31489661	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31489662	31489950	0.87	+	1	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31489662	31489950	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31489951	31490067	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31490068	31490140	1	+	0	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31490068	31490140	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	intron	31490141	31490216	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	CDS	31490217	31490299	0.74	+	2	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	exon	31490217	31490299	.	+	.	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
Ledus.S1	AUGUSTUS	stop_codon	31490300	31490302	.	+	0	transcript_id "Ledus.S1G389800.t3"; gene_id "Ledus.S1G389800"
# This transcript jg11362.t2 is derived from g4980.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11363.t1 is derived from g4981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3824108	3824477	.	+	.	Ledus.S4G051900
Ledus.S4	AUGUSTUS	transcript	3824108	3824460	.	+	.	transcript_id "Ledus.S4G051900.t1"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	start_codon	3824108	3824110	.	+	0	transcript_id "Ledus.S4G051900.t1"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	CDS	3824108	3824282	0.73	+	0	transcript_id "Ledus.S4G051900.t1"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	exon	3824108	3824282	.	+	.	transcript_id "Ledus.S4G051900.t1"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	intron	3824283	3824422	.	+	.	transcript_id "Ledus.S4G051900.t1"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	CDS	3824423	3824460	0.99	+	2	transcript_id "Ledus.S4G051900.t1"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	exon	3824423	3824460	.	+	.	transcript_id "Ledus.S4G051900.t1"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	stop_codon	3824461	3824463	.	+	0	transcript_id "Ledus.S4G051900.t1"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	transcript	3824108	3824477	.	+	.	transcript_id "Ledus.S4G051900.t2"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	start_codon	3824108	3824110	.	+	0	transcript_id "Ledus.S4G051900.t2"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	CDS	3824108	3824278	0.64	+	0	transcript_id "Ledus.S4G051900.t2"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	exon	3824108	3824278	.	+	.	transcript_id "Ledus.S4G051900.t2"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	intron	3824279	3824417	.	+	.	transcript_id "Ledus.S4G051900.t2"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	CDS	3824418	3824477	0.85	+	0	transcript_id "Ledus.S4G051900.t2"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	exon	3824418	3824477	.	+	.	transcript_id "Ledus.S4G051900.t2"; gene_id "Ledus.S4G051900"
Ledus.S4	AUGUSTUS	stop_codon	3824478	3824480	.	+	0	transcript_id "Ledus.S4G051900.t2"; gene_id "Ledus.S4G051900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11528.t1 is derived from g5146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5130604	5132259	.	-	.	Ledus.S4G068400
Ledus.S4	AUGUSTUS	transcript	5130604	5132259	.	-	.	transcript_id "Ledus.S4G068400.t1"; gene_id "Ledus.S4G068400"
Ledus.S4	AUGUSTUS	stop_codon	5130601	5130603	.	-	0	transcript_id "Ledus.S4G068400.t1"; gene_id "Ledus.S4G068400"
Ledus.S4	AUGUSTUS	CDS	5130604	5131533	1	-	0	transcript_id "Ledus.S4G068400.t1"; gene_id "Ledus.S4G068400"
Ledus.S4	AUGUSTUS	exon	5130604	5131533	.	-	.	transcript_id "Ledus.S4G068400.t1"; gene_id "Ledus.S4G068400"
Ledus.S4	AUGUSTUS	intron	5131534	5131674	.	-	.	transcript_id "Ledus.S4G068400.t1"; gene_id "Ledus.S4G068400"
Ledus.S4	AUGUSTUS	CDS	5131675	5132259	0.93	-	0	transcript_id "Ledus.S4G068400.t1"; gene_id "Ledus.S4G068400"
Ledus.S4	AUGUSTUS	exon	5131675	5132259	.	-	.	transcript_id "Ledus.S4G068400.t1"; gene_id "Ledus.S4G068400"
Ledus.S4	AUGUSTUS	start_codon	5132257	5132259	.	-	0	transcript_id "Ledus.S4G068400.t1"; gene_id "Ledus.S4G068400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6966.t1 is derived from g6497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	420014	421617	.	+	.	Ledus.C7G002700
Ledus.C7	AUGUSTUS	transcript	420014	421617	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	start_codon	420014	420016	.	+	0	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	CDS	420014	420211	1	+	0	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	exon	420014	420211	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	intron	420212	420282	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	CDS	420283	420375	1	+	0	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	exon	420283	420375	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	intron	420376	420496	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	CDS	420497	420572	1	+	0	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	exon	420497	420572	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	intron	420573	420647	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	CDS	420648	420754	1	+	2	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	exon	420648	420754	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	intron	420755	420831	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	CDS	420832	420923	1	+	0	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	exon	420832	420923	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	intron	420924	421028	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	CDS	421029	421181	0.98	+	1	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	exon	421029	421181	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	intron	421182	421256	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	CDS	421257	421338	1	+	1	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	exon	421257	421338	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	intron	421339	421409	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	CDS	421410	421504	0.59	+	0	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	exon	421410	421504	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	intron	421505	421604	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	CDS	421605	421617	0.5	+	1	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	exon	421605	421617	.	+	.	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
Ledus.C7	AUGUSTUS	stop_codon	421618	421620	.	+	0	transcript_id "Ledus.C7G002700.t1"; gene_id "Ledus.C7G002700"
# This transcript jg3919.t2 is derived from g1355.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3920.t1 is derived from g1356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13566256	13568123	.	+	.	Ledus.S1G134100
Ledus.S1	AUGUSTUS	transcript	13566256	13568123	.	+	.	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	start_codon	13566256	13566258	.	+	0	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	CDS	13566256	13566388	0.84	+	0	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	exon	13566256	13566388	.	+	.	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	intron	13566389	13566500	.	+	.	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	CDS	13566501	13566834	1	+	2	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	exon	13566501	13566834	.	+	.	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	intron	13566835	13566924	.	+	.	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	CDS	13566925	13567020	1	+	1	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	exon	13566925	13567020	.	+	.	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	intron	13567021	13567107	.	+	.	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	CDS	13567108	13567414	1	+	1	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	exon	13567108	13567414	.	+	.	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	intron	13567415	13567524	.	+	.	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	CDS	13567525	13567772	1	+	0	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	exon	13567525	13567772	.	+	.	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	intron	13567773	13567870	.	+	.	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	CDS	13567871	13568123	0.81	+	1	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	exon	13567871	13568123	.	+	.	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
Ledus.S1	AUGUSTUS	stop_codon	13568124	13568126	.	+	0	transcript_id "Ledus.S1G134100.t1"; gene_id "Ledus.S1G134100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3015.t1 is derived from g450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5344539	5345744	.	-	.	Ledus.S1G043600
Ledus.S1	AUGUSTUS	transcript	5344539	5345744	.	-	.	transcript_id "Ledus.S1G043600.t1"; gene_id "Ledus.S1G043600"
Ledus.S1	AUGUSTUS	stop_codon	5344536	5344538	.	-	0	transcript_id "Ledus.S1G043600.t1"; gene_id "Ledus.S1G043600"
Ledus.S1	AUGUSTUS	CDS	5344539	5345744	0.93	-	0	transcript_id "Ledus.S1G043600.t1"; gene_id "Ledus.S1G043600"
Ledus.S1	AUGUSTUS	exon	5344539	5345744	.	-	.	transcript_id "Ledus.S1G043600.t1"; gene_id "Ledus.S1G043600"
Ledus.S1	AUGUSTUS	start_codon	5345742	5345744	.	-	0	transcript_id "Ledus.S1G043600.t1"; gene_id "Ledus.S1G043600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12112.t1 is derived from g5731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9565531	9566057	.	-	.	Ledus.S4G126800
Ledus.S4	AUGUSTUS	transcript	9565531	9566057	.	-	.	transcript_id "Ledus.S4G126800.t1"; gene_id "Ledus.S4G126800"
Ledus.S4	AUGUSTUS	stop_codon	9565528	9565530	.	-	0	transcript_id "Ledus.S4G126800.t1"; gene_id "Ledus.S4G126800"
Ledus.S4	AUGUSTUS	CDS	9565531	9565804	0.7	-	1	transcript_id "Ledus.S4G126800.t1"; gene_id "Ledus.S4G126800"
Ledus.S4	AUGUSTUS	exon	9565531	9565804	.	-	.	transcript_id "Ledus.S4G126800.t1"; gene_id "Ledus.S4G126800"
Ledus.S4	AUGUSTUS	intron	9565805	9565947	.	-	.	transcript_id "Ledus.S4G126800.t1"; gene_id "Ledus.S4G126800"
Ledus.S4	AUGUSTUS	CDS	9565948	9566057	0.67	-	0	transcript_id "Ledus.S4G126800.t1"; gene_id "Ledus.S4G126800"
Ledus.S4	AUGUSTUS	exon	9565948	9566057	.	-	.	transcript_id "Ledus.S4G126800.t1"; gene_id "Ledus.S4G126800"
Ledus.S4	AUGUSTUS	start_codon	9566055	9566057	.	-	0	transcript_id "Ledus.S4G126800.t1"; gene_id "Ledus.S4G126800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1634.t1 is derived from g8495.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11495859	11496507	.	+	.	Ledus.S2G151600
Ledus.S2	AUGUSTUS	transcript	11495859	11496507	.	+	.	transcript_id "Ledus.S2G151600.t1"; gene_id "Ledus.S2G151600"
Ledus.S2	AUGUSTUS	start_codon	11495859	11495861	.	+	0	transcript_id "Ledus.S2G151600.t1"; gene_id "Ledus.S2G151600"
Ledus.S2	AUGUSTUS	CDS	11495859	11496259	0.68	+	0	transcript_id "Ledus.S2G151600.t1"; gene_id "Ledus.S2G151600"
Ledus.S2	AUGUSTUS	exon	11495859	11496259	.	+	.	transcript_id "Ledus.S2G151600.t1"; gene_id "Ledus.S2G151600"
Ledus.S2	AUGUSTUS	intron	11496260	11496383	.	+	.	transcript_id "Ledus.S2G151600.t1"; gene_id "Ledus.S2G151600"
Ledus.S2	AUGUSTUS	CDS	11496384	11496507	0.76	+	1	transcript_id "Ledus.S2G151600.t1"; gene_id "Ledus.S2G151600"
Ledus.S2	AUGUSTUS	exon	11496384	11496507	.	+	.	transcript_id "Ledus.S2G151600.t1"; gene_id "Ledus.S2G151600"
Ledus.S2	AUGUSTUS	stop_codon	11496508	11496510	.	+	0	transcript_id "Ledus.S2G151600.t1"; gene_id "Ledus.S2G151600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2745.t1 is derived from g179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2920383	2921028	.	+	.	Ledus.S1G016600
Ledus.S1	AUGUSTUS	transcript	2920383	2921028	.	+	.	transcript_id "Ledus.S1G016600.t1"; gene_id "Ledus.S1G016600"
Ledus.S1	AUGUSTUS	start_codon	2920383	2920385	.	+	0	transcript_id "Ledus.S1G016600.t1"; gene_id "Ledus.S1G016600"
Ledus.S1	AUGUSTUS	CDS	2920383	2920704	0.36	+	0	transcript_id "Ledus.S1G016600.t1"; gene_id "Ledus.S1G016600"
Ledus.S1	AUGUSTUS	exon	2920383	2920704	.	+	.	transcript_id "Ledus.S1G016600.t1"; gene_id "Ledus.S1G016600"
Ledus.S1	AUGUSTUS	intron	2920705	2920780	.	+	.	transcript_id "Ledus.S1G016600.t1"; gene_id "Ledus.S1G016600"
Ledus.S1	AUGUSTUS	CDS	2920781	2921028	0.26	+	2	transcript_id "Ledus.S1G016600.t1"; gene_id "Ledus.S1G016600"
Ledus.S1	AUGUSTUS	exon	2920781	2921028	.	+	.	transcript_id "Ledus.S1G016600.t1"; gene_id "Ledus.S1G016600"
Ledus.S1	AUGUSTUS	stop_codon	2921029	2921031	.	+	0	transcript_id "Ledus.S1G016600.t1"; gene_id "Ledus.S1G016600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4021.t1 is derived from g1457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14229178	14232183	.	+	.	Ledus.S1G144200
Ledus.S1	AUGUSTUS	transcript	14229178	14232183	.	+	.	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	start_codon	14229178	14229180	.	+	0	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	CDS	14229178	14229639	0.39	+	0	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	exon	14229178	14229639	.	+	.	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	intron	14229640	14229770	.	+	.	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	CDS	14229771	14230037	1	+	0	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	exon	14229771	14230037	.	+	.	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	intron	14230038	14230189	.	+	.	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	CDS	14230190	14230457	1	+	0	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	exon	14230190	14230457	.	+	.	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	intron	14230458	14230542	.	+	.	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	CDS	14230543	14231729	0.92	+	2	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	exon	14230543	14231729	.	+	.	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	intron	14231730	14231824	.	+	.	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	CDS	14231825	14231952	0.7	+	0	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	exon	14231825	14231952	.	+	.	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	intron	14231953	14232149	.	+	.	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	CDS	14232150	14232183	0.77	+	1	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	exon	14232150	14232183	.	+	.	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
Ledus.S1	AUGUSTUS	stop_codon	14232184	14232186	.	+	0	transcript_id "Ledus.S1G144200.t1"; gene_id "Ledus.S1G144200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3520.t1 is derived from g955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9033368	9034894	.	+	.	Ledus.S1G094100
Ledus.S1	AUGUSTUS	transcript	9033368	9034894	.	+	.	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	start_codon	9033368	9033370	.	+	0	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	CDS	9033368	9033559	0.99	+	0	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	exon	9033368	9033559	.	+	.	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	intron	9033560	9033658	.	+	.	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	CDS	9033659	9033805	1	+	0	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	exon	9033659	9033805	.	+	.	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	intron	9033806	9033996	.	+	.	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	CDS	9033997	9034243	0.95	+	0	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	exon	9033997	9034243	.	+	.	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	intron	9034244	9034330	.	+	.	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	CDS	9034331	9034534	1	+	2	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	exon	9034331	9034534	.	+	.	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	intron	9034535	9034628	.	+	.	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	CDS	9034629	9034894	0.99	+	2	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	exon	9034629	9034894	.	+	.	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
Ledus.S1	AUGUSTUS	stop_codon	9034895	9034897	.	+	0	transcript_id "Ledus.S1G094100.t1"; gene_id "Ledus.S1G094100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5838.t1 is derived from g3280.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27237924	27246179	.	-	.	Ledus.S1G325900
Ledus.S1	AUGUSTUS	transcript	27237924	27246179	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	stop_codon	27237921	27237923	.	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27237924	27238052	1	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27237924	27238052	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27238053	27238358	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27238359	27238457	1	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27238359	27238457	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27238458	27238557	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27238558	27238655	1	-	2	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27238558	27238655	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27238656	27238739	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27238740	27238887	0.53	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27238740	27238887	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27238888	27239039	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27239040	27239169	0.77	-	1	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27239040	27239169	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27239170	27239299	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27239300	27239352	1	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27239300	27239352	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27239353	27239492	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27239493	27239966	0.9	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27239493	27239966	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27239967	27240120	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27240121	27240282	1	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27240121	27240282	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27240283	27240375	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27240376	27240532	1	-	1	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27240376	27240532	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27240533	27240643	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27240644	27240798	1	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27240644	27240798	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27240799	27240959	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27240960	27241216	1	-	2	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27240960	27241216	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27241217	27241341	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27241342	27241424	1	-	1	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27241342	27241424	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27241425	27241516	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27241517	27241653	1	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27241517	27241653	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27241654	27241762	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27241763	27241828	1	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27241763	27241828	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27241829	27241922	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27241923	27242126	1	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27241923	27242126	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27242127	27242260	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27242261	27242424	1	-	2	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27242261	27242424	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27242425	27242628	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27242629	27242862	1	-	2	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27242629	27242862	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27242863	27243024	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27243025	27243125	1	-	1	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27243025	27243125	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27243126	27243207	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27243208	27243404	1	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27243208	27243404	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27243405	27243482	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27243483	27243642	0.92	-	1	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27243483	27243642	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27243643	27243754	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27243755	27244181	0.89	-	2	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27243755	27244181	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27244182	27244365	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27244366	27245102	0.65	-	1	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27244366	27245102	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27245103	27245424	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27245425	27245744	0.51	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27245425	27245744	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	intron	27245745	27245999	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	CDS	27246000	27246179	0.93	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	exon	27246000	27246179	.	-	.	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
Ledus.S1	AUGUSTUS	start_codon	27246177	27246179	.	-	0	transcript_id "Ledus.S1G325900.t1"; gene_id "Ledus.S1G325900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11673.t1 is derived from g5292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5906730	5907313	.	+	.	Ledus.S4G082900
Ledus.S4	AUGUSTUS	transcript	5906730	5907313	.	+	.	transcript_id "Ledus.S4G082900.t1"; gene_id "Ledus.S4G082900"
Ledus.S4	AUGUSTUS	start_codon	5906730	5906732	.	+	0	transcript_id "Ledus.S4G082900.t1"; gene_id "Ledus.S4G082900"
Ledus.S4	AUGUSTUS	CDS	5906730	5906863	0.74	+	0	transcript_id "Ledus.S4G082900.t1"; gene_id "Ledus.S4G082900"
Ledus.S4	AUGUSTUS	exon	5906730	5906863	.	+	.	transcript_id "Ledus.S4G082900.t1"; gene_id "Ledus.S4G082900"
Ledus.S4	AUGUSTUS	intron	5906864	5907014	.	+	.	transcript_id "Ledus.S4G082900.t1"; gene_id "Ledus.S4G082900"
Ledus.S4	AUGUSTUS	CDS	5907015	5907059	0.73	+	1	transcript_id "Ledus.S4G082900.t1"; gene_id "Ledus.S4G082900"
Ledus.S4	AUGUSTUS	exon	5907015	5907059	.	+	.	transcript_id "Ledus.S4G082900.t1"; gene_id "Ledus.S4G082900"
Ledus.S4	AUGUSTUS	intron	5907060	5907246	.	+	.	transcript_id "Ledus.S4G082900.t1"; gene_id "Ledus.S4G082900"
Ledus.S4	AUGUSTUS	CDS	5907247	5907313	0.74	+	1	transcript_id "Ledus.S4G082900.t1"; gene_id "Ledus.S4G082900"
Ledus.S4	AUGUSTUS	exon	5907247	5907313	.	+	.	transcript_id "Ledus.S4G082900.t1"; gene_id "Ledus.S4G082900"
Ledus.S4	AUGUSTUS	stop_codon	5907314	5907316	.	+	0	transcript_id "Ledus.S4G082900.t1"; gene_id "Ledus.S4G082900"
# This transcript jg3522.t2 is derived from g958.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3523.t1 is derived from g959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9039673	9040551	.	+	.	Ledus.S1G094400
Ledus.S1	AUGUSTUS	transcript	9039673	9040551	.	+	.	transcript_id "Ledus.S1G094400.t1"; gene_id "Ledus.S1G094400"
Ledus.S1	AUGUSTUS	start_codon	9039673	9039675	.	+	0	transcript_id "Ledus.S1G094400.t1"; gene_id "Ledus.S1G094400"
Ledus.S1	AUGUSTUS	CDS	9039673	9039963	0.82	+	0	transcript_id "Ledus.S1G094400.t1"; gene_id "Ledus.S1G094400"
Ledus.S1	AUGUSTUS	exon	9039673	9039963	.	+	.	transcript_id "Ledus.S1G094400.t1"; gene_id "Ledus.S1G094400"
Ledus.S1	AUGUSTUS	intron	9039964	9040093	.	+	.	transcript_id "Ledus.S1G094400.t1"; gene_id "Ledus.S1G094400"
Ledus.S1	AUGUSTUS	CDS	9040094	9040195	1	+	0	transcript_id "Ledus.S1G094400.t1"; gene_id "Ledus.S1G094400"
Ledus.S1	AUGUSTUS	exon	9040094	9040195	.	+	.	transcript_id "Ledus.S1G094400.t1"; gene_id "Ledus.S1G094400"
Ledus.S1	AUGUSTUS	intron	9040196	9040356	.	+	.	transcript_id "Ledus.S1G094400.t1"; gene_id "Ledus.S1G094400"
Ledus.S1	AUGUSTUS	CDS	9040357	9040551	0.56	+	0	transcript_id "Ledus.S1G094400.t1"; gene_id "Ledus.S1G094400"
Ledus.S1	AUGUSTUS	exon	9040357	9040551	.	+	.	transcript_id "Ledus.S1G094400.t1"; gene_id "Ledus.S1G094400"
Ledus.S1	AUGUSTUS	stop_codon	9040552	9040554	.	+	0	transcript_id "Ledus.S1G094400.t1"; gene_id "Ledus.S1G094400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6647.t1 is derived from g4090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32849642	32851340	.	-	.	Ledus.S1G406800
Ledus.S1	AUGUSTUS	transcript	32849642	32851340	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	stop_codon	32849639	32849641	.	-	0	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	CDS	32849642	32849758	1	-	0	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	exon	32849642	32849758	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	intron	32849759	32849850	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	CDS	32849851	32849974	1	-	1	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	exon	32849851	32849974	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	intron	32849975	32850103	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	CDS	32850104	32850165	1	-	0	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	exon	32850104	32850165	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	intron	32850166	32850266	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	CDS	32850267	32850364	0.99	-	2	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	exon	32850267	32850364	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	intron	32850365	32850483	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	CDS	32850484	32850520	1	-	0	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	exon	32850484	32850520	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	intron	32850521	32850607	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	CDS	32850608	32850876	1	-	2	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	exon	32850608	32850876	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	intron	32850877	32851018	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	CDS	32851019	32851340	0.58	-	0	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	exon	32851019	32851340	.	-	.	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
Ledus.S1	AUGUSTUS	start_codon	32851338	32851340	.	-	0	transcript_id "Ledus.S1G406800.t1"; gene_id "Ledus.S1G406800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7931.t1 is derived from g12602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7910492	7911086	.	+	.	Ledus.S5G070900
Ledus.S5	AUGUSTUS	transcript	7910492	7911086	.	+	.	transcript_id "Ledus.S5G070900.t1"; gene_id "Ledus.S5G070900"
Ledus.S5	AUGUSTUS	start_codon	7910492	7910494	.	+	0	transcript_id "Ledus.S5G070900.t1"; gene_id "Ledus.S5G070900"
Ledus.S5	AUGUSTUS	CDS	7910492	7910663	0.57	+	0	transcript_id "Ledus.S5G070900.t1"; gene_id "Ledus.S5G070900"
Ledus.S5	AUGUSTUS	exon	7910492	7910663	.	+	.	transcript_id "Ledus.S5G070900.t1"; gene_id "Ledus.S5G070900"
Ledus.S5	AUGUSTUS	intron	7910664	7910826	.	+	.	transcript_id "Ledus.S5G070900.t1"; gene_id "Ledus.S5G070900"
Ledus.S5	AUGUSTUS	CDS	7910827	7911086	0.6	+	2	transcript_id "Ledus.S5G070900.t1"; gene_id "Ledus.S5G070900"
Ledus.S5	AUGUSTUS	exon	7910827	7911086	.	+	.	transcript_id "Ledus.S5G070900.t1"; gene_id "Ledus.S5G070900"
Ledus.S5	AUGUSTUS	stop_codon	7911087	7911089	.	+	0	transcript_id "Ledus.S5G070900.t1"; gene_id "Ledus.S5G070900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4702.t1 is derived from g2140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19126721	19134744	.	+	.	Ledus.S1G212300
Ledus.S1	AUGUSTUS	transcript	19126721	19134744	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	start_codon	19126721	19126723	.	+	0	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19126721	19126980	0.95	+	0	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19126721	19126980	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19126981	19127585	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19127586	19127667	0.95	+	1	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19127586	19127667	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19127668	19127774	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19127775	19127888	1	+	0	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19127775	19127888	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19127889	19127979	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19127980	19128170	0.64	+	0	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19127980	19128170	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19128171	19128290	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19128291	19129248	1	+	1	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19128291	19129248	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19129249	19129461	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19129462	19129556	1	+	0	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19129462	19129556	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19129557	19129655	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19129656	19130097	0.99	+	1	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19129656	19130097	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19130098	19130194	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19130195	19130803	1	+	0	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19130195	19130803	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19130804	19130884	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19130885	19131064	1	+	0	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19130885	19131064	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19131065	19131174	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19131175	19131642	0.94	+	0	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19131175	19131642	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19131643	19131788	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19131789	19131914	1	+	0	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19131789	19131914	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19131915	19132042	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19132043	19132161	1	+	0	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19132043	19132161	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19132162	19132261	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19132262	19133951	0.96	+	1	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19132262	19133951	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	intron	19133952	19134036	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	CDS	19134037	19134744	0.96	+	0	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	exon	19134037	19134744	.	+	.	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
Ledus.S1	AUGUSTUS	stop_codon	19134745	19134747	.	+	0	transcript_id "Ledus.S1G212300.t1"; gene_id "Ledus.S1G212300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7224.t1 is derived from g11895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	114850	116444	.	-	.	Ledus.S5G000200
Ledus.S5	AUGUSTUS	transcript	114850	116444	.	-	.	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	stop_codon	114847	114849	.	-	0	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	CDS	114850	114966	0.35	-	0	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	exon	114850	114966	.	-	.	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	intron	114967	115048	.	-	.	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	CDS	115049	115145	1	-	1	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	exon	115049	115145	.	-	.	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	intron	115146	115230	.	-	.	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	CDS	115231	115401	1	-	1	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	exon	115231	115401	.	-	.	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	intron	115402	115480	.	-	.	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	CDS	115481	115546	1	-	1	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	exon	115481	115546	.	-	.	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	intron	115547	115633	.	-	.	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	CDS	115634	115736	1	-	2	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	exon	115634	115736	.	-	.	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	intron	115737	115819	.	-	.	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	CDS	115820	116444	1	-	0	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	exon	115820	116444	.	-	.	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
Ledus.S5	AUGUSTUS	start_codon	116442	116444	.	-	0	transcript_id "Ledus.S5G000200.t1"; gene_id "Ledus.S5G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2285.t1 is derived from g9148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16953670	16954859	.	+	.	Ledus.S2G216700
Ledus.S2	AUGUSTUS	transcript	16953670	16954859	.	+	.	transcript_id "Ledus.S2G216700.t1"; gene_id "Ledus.S2G216700"
Ledus.S2	AUGUSTUS	start_codon	16953670	16953672	.	+	0	transcript_id "Ledus.S2G216700.t1"; gene_id "Ledus.S2G216700"
Ledus.S2	AUGUSTUS	CDS	16953670	16954323	0.54	+	0	transcript_id "Ledus.S2G216700.t1"; gene_id "Ledus.S2G216700"
Ledus.S2	AUGUSTUS	exon	16953670	16954323	.	+	.	transcript_id "Ledus.S2G216700.t1"; gene_id "Ledus.S2G216700"
Ledus.S2	AUGUSTUS	intron	16954324	16954400	.	+	.	transcript_id "Ledus.S2G216700.t1"; gene_id "Ledus.S2G216700"
Ledus.S2	AUGUSTUS	CDS	16954401	16954859	1	+	0	transcript_id "Ledus.S2G216700.t1"; gene_id "Ledus.S2G216700"
Ledus.S2	AUGUSTUS	exon	16954401	16954859	.	+	.	transcript_id "Ledus.S2G216700.t1"; gene_id "Ledus.S2G216700"
Ledus.S2	AUGUSTUS	stop_codon	16954860	16954862	.	+	0	transcript_id "Ledus.S2G216700.t1"; gene_id "Ledus.S2G216700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9648.t1 is derived from g10678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8737298	8738692	.	+	.	Ledus.S3G112500
Ledus.S3	AUGUSTUS	transcript	8737298	8738692	.	+	.	transcript_id "Ledus.S3G112500.t1"; gene_id "Ledus.S3G112500"
Ledus.S3	AUGUSTUS	start_codon	8737298	8737300	.	+	0	transcript_id "Ledus.S3G112500.t1"; gene_id "Ledus.S3G112500"
Ledus.S3	AUGUSTUS	CDS	8737298	8738692	0.95	+	0	transcript_id "Ledus.S3G112500.t1"; gene_id "Ledus.S3G112500"
Ledus.S3	AUGUSTUS	exon	8737298	8738692	.	+	.	transcript_id "Ledus.S3G112500.t1"; gene_id "Ledus.S3G112500"
Ledus.S3	AUGUSTUS	stop_codon	8738693	8738695	.	+	0	transcript_id "Ledus.S3G112500.t1"; gene_id "Ledus.S3G112500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3352.t1 is derived from g787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7766300	7767412	.	+	.	Ledus.S1G077300
Ledus.S1	AUGUSTUS	transcript	7766300	7767412	.	+	.	transcript_id "Ledus.S1G077300.t1"; gene_id "Ledus.S1G077300"
Ledus.S1	AUGUSTUS	start_codon	7766300	7766302	.	+	0	transcript_id "Ledus.S1G077300.t1"; gene_id "Ledus.S1G077300"
Ledus.S1	AUGUSTUS	CDS	7766300	7767412	0.98	+	0	transcript_id "Ledus.S1G077300.t1"; gene_id "Ledus.S1G077300"
Ledus.S1	AUGUSTUS	exon	7766300	7767412	.	+	.	transcript_id "Ledus.S1G077300.t1"; gene_id "Ledus.S1G077300"
Ledus.S1	AUGUSTUS	stop_codon	7767413	7767415	.	+	0	transcript_id "Ledus.S1G077300.t1"; gene_id "Ledus.S1G077300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13068.t1 is derived from g6878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4863257	4864073	.	+	.	Ledus.S6G013000
Ledus.S6	AUGUSTUS	transcript	4863257	4864073	.	+	.	transcript_id "Ledus.S6G013000.t1"; gene_id "Ledus.S6G013000"
Ledus.S6	AUGUSTUS	start_codon	4863257	4863259	.	+	0	transcript_id "Ledus.S6G013000.t1"; gene_id "Ledus.S6G013000"
Ledus.S6	AUGUSTUS	CDS	4863257	4863466	0.67	+	0	transcript_id "Ledus.S6G013000.t1"; gene_id "Ledus.S6G013000"
Ledus.S6	AUGUSTUS	exon	4863257	4863466	.	+	.	transcript_id "Ledus.S6G013000.t1"; gene_id "Ledus.S6G013000"
Ledus.S6	AUGUSTUS	intron	4863467	4863531	.	+	.	transcript_id "Ledus.S6G013000.t1"; gene_id "Ledus.S6G013000"
Ledus.S6	AUGUSTUS	CDS	4863532	4863644	0.65	+	0	transcript_id "Ledus.S6G013000.t1"; gene_id "Ledus.S6G013000"
Ledus.S6	AUGUSTUS	exon	4863532	4863644	.	+	.	transcript_id "Ledus.S6G013000.t1"; gene_id "Ledus.S6G013000"
Ledus.S6	AUGUSTUS	intron	4863645	4863790	.	+	.	transcript_id "Ledus.S6G013000.t1"; gene_id "Ledus.S6G013000"
Ledus.S6	AUGUSTUS	CDS	4863791	4864073	0.3	+	1	transcript_id "Ledus.S6G013000.t1"; gene_id "Ledus.S6G013000"
Ledus.S6	AUGUSTUS	exon	4863791	4864073	.	+	.	transcript_id "Ledus.S6G013000.t1"; gene_id "Ledus.S6G013000"
Ledus.S6	AUGUSTUS	stop_codon	4864074	4864076	.	+	0	transcript_id "Ledus.S6G013000.t1"; gene_id "Ledus.S6G013000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2209.t1 is derived from g9073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16076229	16076698	.	+	.	Ledus.S2G209200
Ledus.S2	AUGUSTUS	transcript	16076229	16076698	.	+	.	transcript_id "Ledus.S2G209200.t1"; gene_id "Ledus.S2G209200"
Ledus.S2	AUGUSTUS	start_codon	16076229	16076231	.	+	0	transcript_id "Ledus.S2G209200.t1"; gene_id "Ledus.S2G209200"
Ledus.S2	AUGUSTUS	CDS	16076229	16076265	0.78	+	0	transcript_id "Ledus.S2G209200.t1"; gene_id "Ledus.S2G209200"
Ledus.S2	AUGUSTUS	exon	16076229	16076265	.	+	.	transcript_id "Ledus.S2G209200.t1"; gene_id "Ledus.S2G209200"
Ledus.S2	AUGUSTUS	intron	16076266	16076471	.	+	.	transcript_id "Ledus.S2G209200.t1"; gene_id "Ledus.S2G209200"
Ledus.S2	AUGUSTUS	CDS	16076472	16076698	0.59	+	2	transcript_id "Ledus.S2G209200.t1"; gene_id "Ledus.S2G209200"
Ledus.S2	AUGUSTUS	exon	16076472	16076698	.	+	.	transcript_id "Ledus.S2G209200.t1"; gene_id "Ledus.S2G209200"
Ledus.S2	AUGUSTUS	stop_codon	16076699	16076701	.	+	0	transcript_id "Ledus.S2G209200.t1"; gene_id "Ledus.S2G209200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8690.t1 is derived from g9720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1389104	1389618	.	-	.	Ledus.S3G016700
Ledus.S3	AUGUSTUS	transcript	1389104	1389618	.	-	.	transcript_id "Ledus.S3G016700.t1"; gene_id "Ledus.S3G016700"
Ledus.S3	AUGUSTUS	stop_codon	1389101	1389103	.	-	0	transcript_id "Ledus.S3G016700.t1"; gene_id "Ledus.S3G016700"
Ledus.S3	AUGUSTUS	CDS	1389104	1389194	0.99	-	1	transcript_id "Ledus.S3G016700.t1"; gene_id "Ledus.S3G016700"
Ledus.S3	AUGUSTUS	exon	1389104	1389194	.	-	.	transcript_id "Ledus.S3G016700.t1"; gene_id "Ledus.S3G016700"
Ledus.S3	AUGUSTUS	intron	1389195	1389276	.	-	.	transcript_id "Ledus.S3G016700.t1"; gene_id "Ledus.S3G016700"
Ledus.S3	AUGUSTUS	CDS	1389277	1389380	0.97	-	0	transcript_id "Ledus.S3G016700.t1"; gene_id "Ledus.S3G016700"
Ledus.S3	AUGUSTUS	exon	1389277	1389380	.	-	.	transcript_id "Ledus.S3G016700.t1"; gene_id "Ledus.S3G016700"
Ledus.S3	AUGUSTUS	intron	1389381	1389513	.	-	.	transcript_id "Ledus.S3G016700.t1"; gene_id "Ledus.S3G016700"
Ledus.S3	AUGUSTUS	CDS	1389514	1389618	0.52	-	0	transcript_id "Ledus.S3G016700.t1"; gene_id "Ledus.S3G016700"
Ledus.S3	AUGUSTUS	exon	1389514	1389618	.	-	.	transcript_id "Ledus.S3G016700.t1"; gene_id "Ledus.S3G016700"
Ledus.S3	AUGUSTUS	start_codon	1389616	1389618	.	-	0	transcript_id "Ledus.S3G016700.t1"; gene_id "Ledus.S3G016700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12858.t1 is derived from g4431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	33815	34928	.	+	.	Ledus.C10G000100
Ledus.C10	AUGUSTUS	transcript	33815	34928	.	+	.	transcript_id "Ledus.C10G000100.t1"; gene_id "Ledus.C10G000100"
Ledus.C10	AUGUSTUS	start_codon	33815	33817	.	+	0	transcript_id "Ledus.C10G000100.t1"; gene_id "Ledus.C10G000100"
Ledus.C10	AUGUSTUS	CDS	33815	33987	0.97	+	0	transcript_id "Ledus.C10G000100.t1"; gene_id "Ledus.C10G000100"
Ledus.C10	AUGUSTUS	exon	33815	33987	.	+	.	transcript_id "Ledus.C10G000100.t1"; gene_id "Ledus.C10G000100"
Ledus.C10	AUGUSTUS	intron	33988	34174	.	+	.	transcript_id "Ledus.C10G000100.t1"; gene_id "Ledus.C10G000100"
Ledus.C10	AUGUSTUS	CDS	34175	34928	1	+	1	transcript_id "Ledus.C10G000100.t1"; gene_id "Ledus.C10G000100"
Ledus.C10	AUGUSTUS	exon	34175	34928	.	+	.	transcript_id "Ledus.C10G000100.t1"; gene_id "Ledus.C10G000100"
Ledus.C10	AUGUSTUS	stop_codon	34929	34931	.	+	0	transcript_id "Ledus.C10G000100.t1"; gene_id "Ledus.C10G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11350.t1 is derived from g4968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3718649	3720724	.	-	.	Ledus.S4G050600
Ledus.S4	AUGUSTUS	transcript	3718649	3720724	.	-	.	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	stop_codon	3718646	3718648	.	-	0	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	CDS	3718649	3718900	0.99	-	0	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	exon	3718649	3718900	.	-	.	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	intron	3718901	3718990	.	-	.	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	CDS	3718991	3719323	1	-	0	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	exon	3718991	3719323	.	-	.	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	intron	3719324	3719403	.	-	.	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	CDS	3719404	3719514	1	-	0	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	exon	3719404	3719514	.	-	.	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	intron	3719515	3719606	.	-	.	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	CDS	3719607	3719788	1	-	2	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	exon	3719607	3719788	.	-	.	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	intron	3719789	3719965	.	-	.	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	CDS	3719966	3720460	0.49	-	2	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	exon	3719966	3720460	.	-	.	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	intron	3720461	3720690	.	-	.	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	CDS	3720691	3720724	0.28	-	0	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	exon	3720691	3720724	.	-	.	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
Ledus.S4	AUGUSTUS	start_codon	3720722	3720724	.	-	0	transcript_id "Ledus.S4G050600.t1"; gene_id "Ledus.S4G050600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4191.t1 is derived from g1627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15264770	15266464	.	-	.	Ledus.S1G161200
Ledus.S1	AUGUSTUS	transcript	15264770	15266464	.	-	.	transcript_id "Ledus.S1G161200.t1"; gene_id "Ledus.S1G161200"
Ledus.S1	AUGUSTUS	stop_codon	15264767	15264769	.	-	0	transcript_id "Ledus.S1G161200.t1"; gene_id "Ledus.S1G161200"
Ledus.S1	AUGUSTUS	CDS	15264770	15266464	1	-	0	transcript_id "Ledus.S1G161200.t1"; gene_id "Ledus.S1G161200"
Ledus.S1	AUGUSTUS	exon	15264770	15266464	.	-	.	transcript_id "Ledus.S1G161200.t1"; gene_id "Ledus.S1G161200"
Ledus.S1	AUGUSTUS	start_codon	15266462	15266464	.	-	0	transcript_id "Ledus.S1G161200.t1"; gene_id "Ledus.S1G161200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2732.t1 is derived from g166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2677921	2680766	.	-	.	Ledus.S1G015300
Ledus.S1	AUGUSTUS	transcript	2677921	2680766	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	stop_codon	2677918	2677920	.	-	0	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	CDS	2677921	2678010	0.72	-	0	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	exon	2677921	2678010	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	intron	2678011	2678087	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	CDS	2678088	2678906	0.91	-	0	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	exon	2678088	2678906	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	intron	2678907	2679004	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	CDS	2679005	2679085	1	-	0	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	exon	2679005	2679085	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	intron	2679086	2679168	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	CDS	2679169	2679261	1	-	0	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	exon	2679169	2679261	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	intron	2679262	2679356	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	CDS	2679357	2679463	1	-	2	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	exon	2679357	2679463	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	intron	2679464	2679562	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	CDS	2679563	2679665	1	-	0	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	exon	2679563	2679665	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	intron	2679666	2679755	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	CDS	2679756	2679932	1	-	0	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	exon	2679756	2679932	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	intron	2679933	2680024	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	CDS	2680025	2680100	1	-	1	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	exon	2680025	2680100	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	intron	2680101	2680171	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	CDS	2680172	2680256	1	-	2	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	exon	2680172	2680256	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	intron	2680257	2680408	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	CDS	2680409	2680582	1	-	2	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	exon	2680409	2680582	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	intron	2680583	2680657	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	CDS	2680658	2680766	0.78	-	0	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	exon	2680658	2680766	.	-	.	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
Ledus.S1	AUGUSTUS	start_codon	2680764	2680766	.	-	0	transcript_id "Ledus.S1G015300.t1"; gene_id "Ledus.S1G015300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12309.t1 is derived from g5930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11155612	11155908	.	+	.	Ledus.S4G146500
Ledus.S4	AUGUSTUS	transcript	11155612	11155908	.	+	.	transcript_id "Ledus.S4G146500.t1"; gene_id "Ledus.S4G146500"
Ledus.S4	AUGUSTUS	start_codon	11155612	11155614	.	+	0	transcript_id "Ledus.S4G146500.t1"; gene_id "Ledus.S4G146500"
Ledus.S4	AUGUSTUS	CDS	11155612	11155908	1	+	0	transcript_id "Ledus.S4G146500.t1"; gene_id "Ledus.S4G146500"
Ledus.S4	AUGUSTUS	exon	11155612	11155908	.	+	.	transcript_id "Ledus.S4G146500.t1"; gene_id "Ledus.S4G146500"
Ledus.S4	AUGUSTUS	stop_codon	11155909	11155911	.	+	0	transcript_id "Ledus.S4G146500.t1"; gene_id "Ledus.S4G146500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9478.t1 is derived from g10508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7268324	7279210	.	+	.	Ledus.S3G095500
Ledus.S3	AUGUSTUS	transcript	7268324	7279210	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	start_codon	7268324	7268326	.	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7268324	7268527	0.76	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7268324	7268527	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7268528	7268715	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7268716	7268829	0.82	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7268716	7268829	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7268830	7268912	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7268913	7269038	0.99	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7268913	7269038	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7269039	7269122	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7269123	7269194	0.99	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7269123	7269194	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7269195	7269417	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7269418	7269513	0.99	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7269418	7269513	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7269514	7269605	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7269606	7269707	0.99	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7269606	7269707	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7269708	7269804	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7269805	7269876	1	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7269805	7269876	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7269877	7270024	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7270025	7270210	1	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7270025	7270210	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7270211	7270503	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7270504	7270644	0.97	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7270504	7270644	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7270645	7270847	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7270848	7271048	0.76	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7270848	7271048	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7271049	7271142	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7271143	7271252	0.82	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7271143	7271252	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7271253	7271351	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7271352	7271458	0.81	+	1	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7271352	7271458	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7271459	7271533	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7271534	7271652	1	+	2	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7271534	7271652	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7271653	7271807	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7271808	7271901	0.76	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7271808	7271901	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7271902	7271966	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7271967	7272127	0.67	+	2	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7271967	7272127	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7272128	7272206	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7272207	7272301	0.7	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7272207	7272301	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7272302	7272370	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7272371	7272482	0.98	+	1	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7272371	7272482	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7272483	7272576	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7272577	7272645	0.93	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7272577	7272645	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7272646	7272731	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7272732	7272825	0.94	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7272732	7272825	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7272826	7272915	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7272916	7273159	0.44	+	2	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7272916	7273159	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7273160	7273323	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7273324	7273444	0.63	+	1	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7273324	7273444	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7273445	7273536	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7273537	7273620	1	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7273537	7273620	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7273621	7273809	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7273810	7273935	1	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7273810	7273935	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7273936	7274022	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7274023	7274133	0.66	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7274023	7274133	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7274134	7274267	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7274268	7274545	1	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7274268	7274545	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7274546	7274624	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7274625	7274703	1	+	1	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7274625	7274703	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7274704	7274838	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7274839	7274892	1	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7274839	7274892	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7274893	7274968	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7274969	7275121	0.63	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7274969	7275121	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7275122	7275234	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7275235	7275411	0.86	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7275235	7275411	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7275412	7275512	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7275513	7275602	0.98	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7275513	7275602	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7275603	7275701	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7275702	7275779	0.87	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7275702	7275779	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7275780	7275951	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7275952	7276095	0.46	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7275952	7276095	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7276096	7276491	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7276492	7276574	0.77	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7276492	7276574	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7276575	7276677	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7276678	7277829	0.98	+	1	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7276678	7277829	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7277830	7277961	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7277962	7278096	1	+	1	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7277962	7278096	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	intron	7278097	7278405	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	CDS	7278406	7279210	0.98	+	1	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	exon	7278406	7279210	.	+	.	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
Ledus.S3	AUGUSTUS	stop_codon	7279211	7279213	.	+	0	transcript_id "Ledus.S3G095500.t1"; gene_id "Ledus.S3G095500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5936.t1 is derived from g3379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27910793	27912574	.	+	.	Ledus.S1G335700
Ledus.S1	AUGUSTUS	transcript	27910793	27912574	.	+	.	transcript_id "Ledus.S1G335700.t1"; gene_id "Ledus.S1G335700"
Ledus.S1	AUGUSTUS	start_codon	27910793	27910795	.	+	0	transcript_id "Ledus.S1G335700.t1"; gene_id "Ledus.S1G335700"
Ledus.S1	AUGUSTUS	CDS	27910793	27911538	0.98	+	0	transcript_id "Ledus.S1G335700.t1"; gene_id "Ledus.S1G335700"
Ledus.S1	AUGUSTUS	exon	27910793	27911538	.	+	.	transcript_id "Ledus.S1G335700.t1"; gene_id "Ledus.S1G335700"
Ledus.S1	AUGUSTUS	intron	27911539	27911673	.	+	.	transcript_id "Ledus.S1G335700.t1"; gene_id "Ledus.S1G335700"
Ledus.S1	AUGUSTUS	CDS	27911674	27912574	0.99	+	1	transcript_id "Ledus.S1G335700.t1"; gene_id "Ledus.S1G335700"
Ledus.S1	AUGUSTUS	exon	27911674	27912574	.	+	.	transcript_id "Ledus.S1G335700.t1"; gene_id "Ledus.S1G335700"
Ledus.S1	AUGUSTUS	stop_codon	27912575	27912577	.	+	0	transcript_id "Ledus.S1G335700.t1"; gene_id "Ledus.S1G335700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1151.t1 is derived from g8012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7962152	7963694	.	-	.	Ledus.S2G103300
Ledus.S2	AUGUSTUS	transcript	7962152	7963694	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	stop_codon	7962149	7962151	.	-	0	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	CDS	7962152	7962244	1	-	0	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	exon	7962152	7962244	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	intron	7962245	7962331	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	CDS	7962332	7962397	1	-	0	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	exon	7962332	7962397	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	intron	7962398	7962610	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	CDS	7962611	7962675	1	-	2	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	exon	7962611	7962675	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	intron	7962676	7962835	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	CDS	7962836	7962899	1	-	0	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	exon	7962836	7962899	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	intron	7962900	7963029	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	CDS	7963030	7963139	1	-	2	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	exon	7963030	7963139	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	intron	7963140	7963316	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	CDS	7963317	7963404	1	-	0	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	exon	7963317	7963404	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	intron	7963405	7963595	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	CDS	7963596	7963694	0.68	-	0	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	exon	7963596	7963694	.	-	.	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
Ledus.S2	AUGUSTUS	start_codon	7963692	7963694	.	-	0	transcript_id "Ledus.S2G103300.t1"; gene_id "Ledus.S2G103300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11681.t1 is derived from g5300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5952790	5956644	.	-	.	Ledus.S4G083700
Ledus.S4	AUGUSTUS	transcript	5952790	5956644	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	stop_codon	5952787	5952789	.	-	0	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	CDS	5952790	5953029	1	-	0	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	exon	5952790	5953029	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	intron	5953030	5953132	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	CDS	5953133	5953239	0.99	-	2	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	exon	5953133	5953239	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	intron	5953240	5953553	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	CDS	5953554	5953711	1	-	1	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	exon	5953554	5953711	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	intron	5953712	5953951	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	CDS	5953952	5954281	1	-	1	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	exon	5953952	5954281	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	intron	5954282	5954596	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	CDS	5954597	5954701	1	-	1	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	exon	5954597	5954701	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	intron	5954702	5954922	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	CDS	5954923	5955113	1	-	0	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	exon	5954923	5955113	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	intron	5955114	5955202	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	CDS	5955203	5955430	1	-	0	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	exon	5955203	5955430	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	intron	5955431	5955545	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	CDS	5955546	5955632	1	-	0	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	exon	5955546	5955632	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	intron	5955633	5955768	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	CDS	5955769	5955870	1	-	0	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	exon	5955769	5955870	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	intron	5955871	5955955	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	CDS	5955956	5956086	1	-	2	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	exon	5955956	5956086	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	intron	5956087	5956287	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	CDS	5956288	5956411	1	-	0	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	exon	5956288	5956411	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	intron	5956412	5956488	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	CDS	5956489	5956644	0.99	-	0	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	exon	5956489	5956644	.	-	.	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
Ledus.S4	AUGUSTUS	start_codon	5956642	5956644	.	-	0	transcript_id "Ledus.S4G083700.t1"; gene_id "Ledus.S4G083700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9916.t1 is derived from g10946.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11201769	11202617	.	-	.	Ledus.S3G139300
Ledus.S3	AUGUSTUS	transcript	11201769	11202617	.	-	.	transcript_id "Ledus.S3G139300.t1"; gene_id "Ledus.S3G139300"
Ledus.S3	AUGUSTUS	stop_codon	11201766	11201768	.	-	0	transcript_id "Ledus.S3G139300.t1"; gene_id "Ledus.S3G139300"
Ledus.S3	AUGUSTUS	CDS	11201769	11202617	1	-	0	transcript_id "Ledus.S3G139300.t1"; gene_id "Ledus.S3G139300"
Ledus.S3	AUGUSTUS	exon	11201769	11202617	.	-	.	transcript_id "Ledus.S3G139300.t1"; gene_id "Ledus.S3G139300"
Ledus.S3	AUGUSTUS	start_codon	11202615	11202617	.	-	0	transcript_id "Ledus.S3G139300.t1"; gene_id "Ledus.S3G139300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11784.t1 is derived from g5403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6760337	6761298	.	+	.	Ledus.S4G094000
Ledus.S4	AUGUSTUS	transcript	6760337	6761298	.	+	.	transcript_id "Ledus.S4G094000.t1"; gene_id "Ledus.S4G094000"
Ledus.S4	AUGUSTUS	start_codon	6760337	6760339	.	+	0	transcript_id "Ledus.S4G094000.t1"; gene_id "Ledus.S4G094000"
Ledus.S4	AUGUSTUS	CDS	6760337	6760695	0.29	+	0	transcript_id "Ledus.S4G094000.t1"; gene_id "Ledus.S4G094000"
Ledus.S4	AUGUSTUS	exon	6760337	6760695	.	+	.	transcript_id "Ledus.S4G094000.t1"; gene_id "Ledus.S4G094000"
Ledus.S4	AUGUSTUS	intron	6760696	6760904	.	+	.	transcript_id "Ledus.S4G094000.t1"; gene_id "Ledus.S4G094000"
Ledus.S4	AUGUSTUS	CDS	6760905	6761103	0.74	+	1	transcript_id "Ledus.S4G094000.t1"; gene_id "Ledus.S4G094000"
Ledus.S4	AUGUSTUS	exon	6760905	6761103	.	+	.	transcript_id "Ledus.S4G094000.t1"; gene_id "Ledus.S4G094000"
Ledus.S4	AUGUSTUS	intron	6761104	6761181	.	+	.	transcript_id "Ledus.S4G094000.t1"; gene_id "Ledus.S4G094000"
Ledus.S4	AUGUSTUS	CDS	6761182	6761298	0.96	+	0	transcript_id "Ledus.S4G094000.t1"; gene_id "Ledus.S4G094000"
Ledus.S4	AUGUSTUS	exon	6761182	6761298	.	+	.	transcript_id "Ledus.S4G094000.t1"; gene_id "Ledus.S4G094000"
Ledus.S4	AUGUSTUS	stop_codon	6761299	6761301	.	+	0	transcript_id "Ledus.S4G094000.t1"; gene_id "Ledus.S4G094000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10662.t1 is derived from g11692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16924691	16925234	.	-	.	Ledus.S3G213900
Ledus.S3	AUGUSTUS	transcript	16924691	16925234	.	-	.	transcript_id "Ledus.S3G213900.t1"; gene_id "Ledus.S3G213900"
Ledus.S3	AUGUSTUS	stop_codon	16924688	16924690	.	-	0	transcript_id "Ledus.S3G213900.t1"; gene_id "Ledus.S3G213900"
Ledus.S3	AUGUSTUS	CDS	16924691	16924789	0.99	-	0	transcript_id "Ledus.S3G213900.t1"; gene_id "Ledus.S3G213900"
Ledus.S3	AUGUSTUS	exon	16924691	16924789	.	-	.	transcript_id "Ledus.S3G213900.t1"; gene_id "Ledus.S3G213900"
Ledus.S3	AUGUSTUS	intron	16924790	16924901	.	-	.	transcript_id "Ledus.S3G213900.t1"; gene_id "Ledus.S3G213900"
Ledus.S3	AUGUSTUS	CDS	16924902	16924988	0.77	-	0	transcript_id "Ledus.S3G213900.t1"; gene_id "Ledus.S3G213900"
Ledus.S3	AUGUSTUS	exon	16924902	16924988	.	-	.	transcript_id "Ledus.S3G213900.t1"; gene_id "Ledus.S3G213900"
Ledus.S3	AUGUSTUS	intron	16924989	16925081	.	-	.	transcript_id "Ledus.S3G213900.t1"; gene_id "Ledus.S3G213900"
Ledus.S3	AUGUSTUS	CDS	16925082	16925234	0.97	-	0	transcript_id "Ledus.S3G213900.t1"; gene_id "Ledus.S3G213900"
Ledus.S3	AUGUSTUS	exon	16925082	16925234	.	-	.	transcript_id "Ledus.S3G213900.t1"; gene_id "Ledus.S3G213900"
Ledus.S3	AUGUSTUS	start_codon	16925232	16925234	.	-	0	transcript_id "Ledus.S3G213900.t1"; gene_id "Ledus.S3G213900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9876.t1 is derived from g10906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10879984	10885796	.	+	.	Ledus.S3G135300
Ledus.S3	AUGUSTUS	transcript	10879984	10885796	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	start_codon	10879984	10879986	.	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10879984	10880040	0.47	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10879984	10880040	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10880041	10880135	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10880136	10880148	0.5	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10880136	10880148	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10880149	10880337	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10880338	10880513	0.5	+	2	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10880338	10880513	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10880514	10880697	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10880698	10880740	1	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10880698	10880740	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10880741	10881000	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10881001	10881122	1	+	2	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10881001	10881122	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10881123	10881219	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10881220	10881324	1	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10881220	10881324	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10881325	10881464	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10881465	10881609	0.97	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10881465	10881609	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10881610	10881717	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10881718	10881809	1	+	2	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10881718	10881809	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10881810	10882009	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10882010	10882103	0.92	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10882010	10882103	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10882104	10882205	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10882206	10882638	0.88	+	2	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10882206	10882638	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10882639	10882735	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10882736	10882875	1	+	1	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10882736	10882875	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10882876	10883020	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10883021	10883448	0.71	+	2	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10883021	10883448	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10883449	10883538	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10883539	10883709	1	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10883539	10883709	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10883710	10883789	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10883790	10884083	0.99	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10883790	10884083	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10884084	10884253	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10884254	10884464	1	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10884254	10884464	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10884465	10884563	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10884564	10885039	0.88	+	2	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10884564	10885039	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10885040	10885134	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10885135	10885176	0.99	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10885135	10885176	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10885177	10885291	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10885292	10885386	0.98	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10885292	10885386	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10885387	10885546	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10885547	10885796	0.8	+	1	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10885547	10885796	.	+	.	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	stop_codon	10885797	10885799	.	+	0	transcript_id "Ledus.S3G135300.t1"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	transcript	10879984	10885796	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	start_codon	10879984	10879986	.	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10879984	10880040	0.41	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10879984	10880040	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10880041	10880135	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10880136	10880148	0.43	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10880136	10880148	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10880149	10880337	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10880338	10880513	0.43	+	2	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10880338	10880513	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10880514	10880697	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10880698	10880740	1	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10880698	10880740	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10880741	10881000	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10881001	10881122	1	+	2	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10881001	10881122	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10881123	10881219	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10881220	10881324	1	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10881220	10881324	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10881325	10881464	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10881465	10881609	0.97	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10881465	10881609	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10881610	10881717	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10881718	10881809	0.98	+	2	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10881718	10881809	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10881810	10882009	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10882010	10882103	0.88	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10882010	10882103	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10882104	10882205	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10882206	10882638	0.81	+	2	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10882206	10882638	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10882639	10882735	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10882736	10882875	1	+	1	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10882736	10882875	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10882876	10883020	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10883021	10883448	0.72	+	2	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10883021	10883448	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10883449	10883538	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10883539	10883709	1	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10883539	10883709	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10883710	10883789	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10883790	10884083	1	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10883790	10884083	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10884084	10884253	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10884254	10884464	0.99	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10884254	10884464	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10884465	10884566	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10884567	10885039	0.46	+	2	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10884567	10885039	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10885040	10885134	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10885135	10885176	0.99	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10885135	10885176	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10885177	10885291	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10885292	10885386	1	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10885292	10885386	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	intron	10885387	10885546	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	CDS	10885547	10885796	0.76	+	1	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	exon	10885547	10885796	.	+	.	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
Ledus.S3	AUGUSTUS	stop_codon	10885797	10885799	.	+	0	transcript_id "Ledus.S3G135300.t2"; gene_id "Ledus.S3G135300"
# This transcript jg6011.t2 is derived from g3454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6012.t1 is derived from g3455.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28329195	28330245	.	-	.	Ledus.S1G343300
Ledus.S1	AUGUSTUS	transcript	28329195	28329970	.	-	.	transcript_id "Ledus.S1G343300.t1"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	stop_codon	28329192	28329194	.	-	0	transcript_id "Ledus.S1G343300.t1"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	CDS	28329195	28329778	0.87	-	2	transcript_id "Ledus.S1G343300.t1"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	exon	28329195	28329778	.	-	.	transcript_id "Ledus.S1G343300.t1"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	intron	28329779	28329936	.	-	.	transcript_id "Ledus.S1G343300.t1"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	CDS	28329937	28329970	0.87	-	0	transcript_id "Ledus.S1G343300.t1"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	exon	28329937	28329970	.	-	.	transcript_id "Ledus.S1G343300.t1"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	start_codon	28329968	28329970	.	-	0	transcript_id "Ledus.S1G343300.t1"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	transcript	28329195	28330245	.	-	.	transcript_id "Ledus.S1G343300.t2"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	stop_codon	28329192	28329194	.	-	0	transcript_id "Ledus.S1G343300.t2"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	CDS	28329195	28330077	0.82	-	1	transcript_id "Ledus.S1G343300.t2"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	exon	28329195	28330077	.	-	.	transcript_id "Ledus.S1G343300.t2"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	intron	28330078	28330228	.	-	.	transcript_id "Ledus.S1G343300.t2"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	CDS	28330229	28330245	0.85	-	0	transcript_id "Ledus.S1G343300.t2"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	exon	28330229	28330245	.	-	.	transcript_id "Ledus.S1G343300.t2"; gene_id "Ledus.S1G343300"
Ledus.S1	AUGUSTUS	start_codon	28330243	28330245	.	-	0	transcript_id "Ledus.S1G343300.t2"; gene_id "Ledus.S1G343300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11194.t1 is derived from g4812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2612687	2613247	.	-	.	Ledus.S4G035000
Ledus.S4	AUGUSTUS	transcript	2612687	2613247	.	-	.	transcript_id "Ledus.S4G035000.t1"; gene_id "Ledus.S4G035000"
Ledus.S4	AUGUSTUS	stop_codon	2612684	2612686	.	-	0	transcript_id "Ledus.S4G035000.t1"; gene_id "Ledus.S4G035000"
Ledus.S4	AUGUSTUS	CDS	2612687	2613247	0.41	-	0	transcript_id "Ledus.S4G035000.t1"; gene_id "Ledus.S4G035000"
Ledus.S4	AUGUSTUS	exon	2612687	2613247	.	-	.	transcript_id "Ledus.S4G035000.t1"; gene_id "Ledus.S4G035000"
Ledus.S4	AUGUSTUS	start_codon	2613245	2613247	.	-	0	transcript_id "Ledus.S4G035000.t1"; gene_id "Ledus.S4G035000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6003.t1 is derived from g3446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28222985	28223218	.	+	.	Ledus.S1G342400
Ledus.S1	AUGUSTUS	transcript	28222985	28223218	.	+	.	transcript_id "Ledus.S1G342400.t1"; gene_id "Ledus.S1G342400"
Ledus.S1	AUGUSTUS	start_codon	28222985	28222987	.	+	0	transcript_id "Ledus.S1G342400.t1"; gene_id "Ledus.S1G342400"
Ledus.S1	AUGUSTUS	CDS	28222985	28223218	1	+	0	transcript_id "Ledus.S1G342400.t1"; gene_id "Ledus.S1G342400"
Ledus.S1	AUGUSTUS	exon	28222985	28223218	.	+	.	transcript_id "Ledus.S1G342400.t1"; gene_id "Ledus.S1G342400"
Ledus.S1	AUGUSTUS	stop_codon	28223219	28223221	.	+	0	transcript_id "Ledus.S1G342400.t1"; gene_id "Ledus.S1G342400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg71.t1 is derived from g9484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	231209	231988	.	-	.	Ledus.C8G003100
Ledus.C8	AUGUSTUS	transcript	231209	231988	.	-	.	transcript_id "Ledus.C8G003100.t1"; gene_id "Ledus.C8G003100"
Ledus.C8	AUGUSTUS	stop_codon	231206	231208	.	-	0	transcript_id "Ledus.C8G003100.t1"; gene_id "Ledus.C8G003100"
Ledus.C8	AUGUSTUS	CDS	231209	231988	0.52	-	0	transcript_id "Ledus.C8G003100.t1"; gene_id "Ledus.C8G003100"
Ledus.C8	AUGUSTUS	exon	231209	231988	.	-	.	transcript_id "Ledus.C8G003100.t1"; gene_id "Ledus.C8G003100"
Ledus.C8	AUGUSTUS	start_codon	231986	231988	.	-	0	transcript_id "Ledus.C8G003100.t1"; gene_id "Ledus.C8G003100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12678.t1 is derived from g6300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13836738	13837502	.	-	.	Ledus.S4G183400
Ledus.S4	AUGUSTUS	transcript	13836738	13837502	.	-	.	transcript_id "Ledus.S4G183400.t1"; gene_id "Ledus.S4G183400"
Ledus.S4	AUGUSTUS	stop_codon	13836735	13836737	.	-	0	transcript_id "Ledus.S4G183400.t1"; gene_id "Ledus.S4G183400"
Ledus.S4	AUGUSTUS	CDS	13836738	13837502	0.47	-	0	transcript_id "Ledus.S4G183400.t1"; gene_id "Ledus.S4G183400"
Ledus.S4	AUGUSTUS	exon	13836738	13837502	.	-	.	transcript_id "Ledus.S4G183400.t1"; gene_id "Ledus.S4G183400"
Ledus.S4	AUGUSTUS	start_codon	13837500	13837502	.	-	0	transcript_id "Ledus.S4G183400.t1"; gene_id "Ledus.S4G183400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9984.t1 is derived from g11014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11745211	11746308	.	+	.	Ledus.S3G146100
Ledus.S3	AUGUSTUS	transcript	11745211	11746308	.	+	.	transcript_id "Ledus.S3G146100.t1"; gene_id "Ledus.S3G146100"
Ledus.S3	AUGUSTUS	start_codon	11745211	11745213	.	+	0	transcript_id "Ledus.S3G146100.t1"; gene_id "Ledus.S3G146100"
Ledus.S3	AUGUSTUS	CDS	11745211	11746308	1	+	0	transcript_id "Ledus.S3G146100.t1"; gene_id "Ledus.S3G146100"
Ledus.S3	AUGUSTUS	exon	11745211	11746308	.	+	.	transcript_id "Ledus.S3G146100.t1"; gene_id "Ledus.S3G146100"
Ledus.S3	AUGUSTUS	stop_codon	11746309	11746311	.	+	0	transcript_id "Ledus.S3G146100.t1"; gene_id "Ledus.S3G146100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12265.t1 is derived from g5885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10703409	10704556	.	-	.	Ledus.S4G142100
Ledus.S4	AUGUSTUS	transcript	10703409	10704556	.	-	.	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	stop_codon	10703406	10703408	.	-	0	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	CDS	10703409	10703483	1	-	0	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	exon	10703409	10703483	.	-	.	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	intron	10703484	10703579	.	-	.	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	CDS	10703580	10703672	1	-	0	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	exon	10703580	10703672	.	-	.	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	intron	10703673	10703785	.	-	.	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	CDS	10703786	10703836	1	-	0	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	exon	10703786	10703836	.	-	.	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	intron	10703837	10703934	.	-	.	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	CDS	10703935	10704091	1	-	1	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	exon	10703935	10704091	.	-	.	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	intron	10704092	10704395	.	-	.	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	CDS	10704396	10704556	0.62	-	0	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	exon	10704396	10704556	.	-	.	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
Ledus.S4	AUGUSTUS	start_codon	10704554	10704556	.	-	0	transcript_id "Ledus.S4G142100.t1"; gene_id "Ledus.S4G142100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4776.t1 is derived from g2214.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19694636	19695556	.	-	.	Ledus.S1G219700
Ledus.S1	AUGUSTUS	transcript	19694636	19695556	.	-	.	transcript_id "Ledus.S1G219700.t1"; gene_id "Ledus.S1G219700"
Ledus.S1	AUGUSTUS	stop_codon	19694633	19694635	.	-	0	transcript_id "Ledus.S1G219700.t1"; gene_id "Ledus.S1G219700"
Ledus.S1	AUGUSTUS	CDS	19694636	19694950	1	-	0	transcript_id "Ledus.S1G219700.t1"; gene_id "Ledus.S1G219700"
Ledus.S1	AUGUSTUS	exon	19694636	19694950	.	-	.	transcript_id "Ledus.S1G219700.t1"; gene_id "Ledus.S1G219700"
Ledus.S1	AUGUSTUS	intron	19694951	19695041	.	-	.	transcript_id "Ledus.S1G219700.t1"; gene_id "Ledus.S1G219700"
Ledus.S1	AUGUSTUS	CDS	19695042	19695287	1	-	0	transcript_id "Ledus.S1G219700.t1"; gene_id "Ledus.S1G219700"
Ledus.S1	AUGUSTUS	exon	19695042	19695287	.	-	.	transcript_id "Ledus.S1G219700.t1"; gene_id "Ledus.S1G219700"
Ledus.S1	AUGUSTUS	intron	19695288	19695358	.	-	.	transcript_id "Ledus.S1G219700.t1"; gene_id "Ledus.S1G219700"
Ledus.S1	AUGUSTUS	CDS	19695359	19695556	0.87	-	0	transcript_id "Ledus.S1G219700.t1"; gene_id "Ledus.S1G219700"
Ledus.S1	AUGUSTUS	exon	19695359	19695556	.	-	.	transcript_id "Ledus.S1G219700.t1"; gene_id "Ledus.S1G219700"
Ledus.S1	AUGUSTUS	start_codon	19695554	19695556	.	-	0	transcript_id "Ledus.S1G219700.t1"; gene_id "Ledus.S1G219700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg550.t1 is derived from g7411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3180510	3181598	.	+	.	Ledus.S2G043200
Ledus.S2	AUGUSTUS	transcript	3180510	3181598	.	+	.	transcript_id "Ledus.S2G043200.t1"; gene_id "Ledus.S2G043200"
Ledus.S2	AUGUSTUS	start_codon	3180510	3180512	.	+	0	transcript_id "Ledus.S2G043200.t1"; gene_id "Ledus.S2G043200"
Ledus.S2	AUGUSTUS	CDS	3180510	3181598	0.99	+	0	transcript_id "Ledus.S2G043200.t1"; gene_id "Ledus.S2G043200"
Ledus.S2	AUGUSTUS	exon	3180510	3181598	.	+	.	transcript_id "Ledus.S2G043200.t1"; gene_id "Ledus.S2G043200"
Ledus.S2	AUGUSTUS	stop_codon	3181599	3181601	.	+	0	transcript_id "Ledus.S2G043200.t1"; gene_id "Ledus.S2G043200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1342.t1 is derived from g8203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9337342	9338493	.	-	.	Ledus.S2G122400
Ledus.S2	AUGUSTUS	transcript	9337342	9338493	.	-	.	transcript_id "Ledus.S2G122400.t1"; gene_id "Ledus.S2G122400"
Ledus.S2	AUGUSTUS	stop_codon	9337339	9337341	.	-	0	transcript_id "Ledus.S2G122400.t1"; gene_id "Ledus.S2G122400"
Ledus.S2	AUGUSTUS	CDS	9337342	9338493	0.98	-	0	transcript_id "Ledus.S2G122400.t1"; gene_id "Ledus.S2G122400"
Ledus.S2	AUGUSTUS	exon	9337342	9338493	.	-	.	transcript_id "Ledus.S2G122400.t1"; gene_id "Ledus.S2G122400"
Ledus.S2	AUGUSTUS	start_codon	9338491	9338493	.	-	0	transcript_id "Ledus.S2G122400.t1"; gene_id "Ledus.S2G122400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1019.t1 is derived from g7880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6789816	6792080	.	+	.	Ledus.S2G090100
Ledus.S2	AUGUSTUS	transcript	6789816	6792080	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	start_codon	6789816	6789818	.	+	0	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	CDS	6789816	6790106	0.42	+	0	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	exon	6789816	6790106	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	intron	6790107	6790278	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	CDS	6790279	6790328	1	+	0	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	exon	6790279	6790328	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	intron	6790329	6790514	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	CDS	6790515	6790650	0.91	+	1	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	exon	6790515	6790650	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	intron	6790651	6790759	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	CDS	6790760	6790861	0.6	+	0	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	exon	6790760	6790861	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	intron	6790862	6790962	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	CDS	6790963	6791190	0.96	+	0	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	exon	6790963	6791190	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	intron	6791191	6791334	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	CDS	6791335	6791416	1	+	0	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	exon	6791335	6791416	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	intron	6791417	6791548	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	CDS	6791549	6791631	1	+	2	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	exon	6791549	6791631	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	intron	6791632	6791717	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	CDS	6791718	6791809	0.96	+	0	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	exon	6791718	6791809	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	intron	6791810	6791917	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	CDS	6791918	6792080	0.95	+	1	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	exon	6791918	6792080	.	+	.	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
Ledus.S2	AUGUSTUS	stop_codon	6792081	6792083	.	+	0	transcript_id "Ledus.S2G090100.t1"; gene_id "Ledus.S2G090100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4831.t1 is derived from g2269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20017309	20017844	.	+	.	Ledus.S1G225200
Ledus.S1	AUGUSTUS	transcript	20017309	20017844	.	+	.	transcript_id "Ledus.S1G225200.t1"; gene_id "Ledus.S1G225200"
Ledus.S1	AUGUSTUS	start_codon	20017309	20017311	.	+	0	transcript_id "Ledus.S1G225200.t1"; gene_id "Ledus.S1G225200"
Ledus.S1	AUGUSTUS	CDS	20017309	20017656	0.87	+	0	transcript_id "Ledus.S1G225200.t1"; gene_id "Ledus.S1G225200"
Ledus.S1	AUGUSTUS	exon	20017309	20017656	.	+	.	transcript_id "Ledus.S1G225200.t1"; gene_id "Ledus.S1G225200"
Ledus.S1	AUGUSTUS	intron	20017657	20017736	.	+	.	transcript_id "Ledus.S1G225200.t1"; gene_id "Ledus.S1G225200"
Ledus.S1	AUGUSTUS	CDS	20017737	20017844	0.72	+	0	transcript_id "Ledus.S1G225200.t1"; gene_id "Ledus.S1G225200"
Ledus.S1	AUGUSTUS	exon	20017737	20017844	.	+	.	transcript_id "Ledus.S1G225200.t1"; gene_id "Ledus.S1G225200"
Ledus.S1	AUGUSTUS	stop_codon	20017845	20017847	.	+	0	transcript_id "Ledus.S1G225200.t1"; gene_id "Ledus.S1G225200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6340.t1 is derived from g3783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30656808	30658081	.	+	.	Ledus.S1G376100
Ledus.S1	AUGUSTUS	transcript	30656808	30658081	.	+	.	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	start_codon	30656808	30656810	.	+	0	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	CDS	30656808	30656985	0.82	+	0	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	exon	30656808	30656985	.	+	.	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	intron	30656986	30657065	.	+	.	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	CDS	30657066	30657262	0.92	+	2	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	exon	30657066	30657262	.	+	.	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	intron	30657263	30657345	.	+	.	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	CDS	30657346	30657585	0.99	+	0	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	exon	30657346	30657585	.	+	.	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	intron	30657586	30657647	.	+	.	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	CDS	30657648	30657801	1	+	0	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	exon	30657648	30657801	.	+	.	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	intron	30657802	30657872	.	+	.	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	CDS	30657873	30658081	0.99	+	2	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	exon	30657873	30658081	.	+	.	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
Ledus.S1	AUGUSTUS	stop_codon	30658082	30658084	.	+	0	transcript_id "Ledus.S1G376100.t1"; gene_id "Ledus.S1G376100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8194.t1 is derived from g12865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9779777	9784189	.	-	.	Ledus.S5G097200
Ledus.S5	AUGUSTUS	transcript	9779777	9784189	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	stop_codon	9779774	9779776	.	-	0	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9779777	9780019	0.9	-	0	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9779777	9780019	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9780020	9780118	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9780119	9780409	1	-	0	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9780119	9780409	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9780410	9780631	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9780632	9780690	1	-	2	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9780632	9780690	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9780691	9780893	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9780894	9780966	1	-	0	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9780894	9780966	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9780967	9781073	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9781074	9781224	1	-	1	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9781074	9781224	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9781225	9781320	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9781321	9781400	1	-	0	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9781321	9781400	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9781401	9781589	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9781590	9781777	1	-	2	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9781590	9781777	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9781778	9781992	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9781993	9782095	1	-	0	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9781993	9782095	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9782096	9782249	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9782250	9782394	1	-	1	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9782250	9782394	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9782395	9782547	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9782548	9782773	1	-	2	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9782548	9782773	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9782774	9783049	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9783050	9783163	1	-	2	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9783050	9783163	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9783164	9783747	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9783748	9783862	0.72	-	0	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9783748	9783862	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9783863	9784153	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9784154	9784189	0.57	-	0	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9784154	9784189	.	-	.	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	start_codon	9784187	9784189	.	-	0	transcript_id "Ledus.S5G097200.t1"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	transcript	9779777	9784189	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	stop_codon	9779774	9779776	.	-	0	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9779777	9780019	0.92	-	0	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9779777	9780019	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9780020	9780118	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9780119	9780409	1	-	0	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9780119	9780409	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9780410	9780631	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9780632	9780690	1	-	2	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9780632	9780690	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9780691	9780878	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9780879	9780966	1	-	0	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9780879	9780966	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9780967	9781073	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9781074	9781224	1	-	1	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9781074	9781224	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9781225	9781320	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9781321	9781400	1	-	0	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9781321	9781400	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9781401	9781589	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9781590	9781777	1	-	2	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9781590	9781777	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9781778	9781992	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9781993	9782095	1	-	0	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9781993	9782095	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9782096	9782249	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9782250	9782394	1	-	1	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9782250	9782394	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9782395	9782547	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9782548	9782773	1	-	2	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9782548	9782773	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9782774	9783049	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9783050	9783163	1	-	2	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9783050	9783163	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9783164	9783747	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9783748	9783862	0.74	-	0	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9783748	9783862	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9783863	9784153	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9784154	9784189	0.47	-	0	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9784154	9784189	.	-	.	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	start_codon	9784187	9784189	.	-	0	transcript_id "Ledus.S5G097200.t2"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	transcript	9779777	9783676	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	stop_codon	9779774	9779776	.	-	0	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9779777	9780019	0.92	-	0	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9779777	9780019	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9780020	9780118	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9780119	9780409	0.98	-	0	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9780119	9780409	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9780410	9780631	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9780632	9780690	1	-	2	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9780632	9780690	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9780691	9780893	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9780894	9780966	1	-	0	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9780894	9780966	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9780967	9781073	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9781074	9781224	1	-	1	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9781074	9781224	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9781225	9781320	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9781321	9781400	1	-	0	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9781321	9781400	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9781401	9781589	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9781590	9781777	1	-	2	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9781590	9781777	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9781778	9781992	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9781993	9782095	1	-	0	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9781993	9782095	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9782096	9782249	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9782250	9782394	1	-	1	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9782250	9782394	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9782395	9782547	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9782548	9782773	1	-	2	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9782548	9782773	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9782774	9783049	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9783050	9783163	0.98	-	2	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9783050	9783163	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9783164	9783309	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9783310	9783325	0.98	-	0	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9783310	9783325	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9783326	9783418	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9783419	9783503	0.19	-	1	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9783419	9783503	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	intron	9783504	9783653	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	CDS	9783654	9783676	0.14	-	0	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	exon	9783654	9783676	.	-	.	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
Ledus.S5	AUGUSTUS	start_codon	9783674	9783676	.	-	0	transcript_id "Ledus.S5G097200.t3"; gene_id "Ledus.S5G097200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5355.t1 is derived from g2794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23628140	23629996	.	-	.	Ledus.S1G277600
Ledus.S1	AUGUSTUS	transcript	23628140	23629996	.	-	.	transcript_id "Ledus.S1G277600.t1"; gene_id "Ledus.S1G277600"
Ledus.S1	AUGUSTUS	stop_codon	23628137	23628139	.	-	0	transcript_id "Ledus.S1G277600.t1"; gene_id "Ledus.S1G277600"
Ledus.S1	AUGUSTUS	CDS	23628140	23629996	0.79	-	0	transcript_id "Ledus.S1G277600.t1"; gene_id "Ledus.S1G277600"
Ledus.S1	AUGUSTUS	exon	23628140	23629996	.	-	.	transcript_id "Ledus.S1G277600.t1"; gene_id "Ledus.S1G277600"
Ledus.S1	AUGUSTUS	start_codon	23629994	23629996	.	-	0	transcript_id "Ledus.S1G277600.t1"; gene_id "Ledus.S1G277600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11840.t1 is derived from g5459.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7215057	7218856	.	+	.	Ledus.S4G099600
Ledus.S4	AUGUSTUS	transcript	7215057	7218856	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	start_codon	7215057	7215059	.	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7215057	7215114	0.86	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7215057	7215114	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7215115	7215294	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7215295	7215362	1	+	2	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7215295	7215362	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7215363	7215511	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7215512	7215586	1	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7215512	7215586	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7215587	7215667	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7215668	7215787	1	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7215668	7215787	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7215788	7215880	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7215881	7215940	1	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7215881	7215940	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7215941	7216051	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7216052	7216168	1	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7216052	7216168	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7216169	7216311	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7216312	7216419	1	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7216312	7216419	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7216420	7216503	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7216504	7216761	1	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7216504	7216761	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7216762	7216843	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7216844	7216963	0.98	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7216844	7216963	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7216964	7217082	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7217083	7217193	1	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7217083	7217193	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7217194	7217263	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7217264	7217349	1	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7217264	7217349	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7217350	7217462	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7217463	7217580	1	+	1	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7217463	7217580	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7217581	7217668	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7217669	7217772	1	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7217669	7217772	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7217773	7217858	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7217859	7217958	1	+	1	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7217859	7217958	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7217959	7218073	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7218074	7218165	1	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7218074	7218165	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7218166	7218277	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7218278	7218495	1	+	1	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7218278	7218495	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7218496	7218572	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7218573	7218671	1	+	2	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7218573	7218671	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7218672	7218830	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7218831	7218856	0.99	+	2	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7218831	7218856	.	+	.	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	stop_codon	7218857	7218859	.	+	0	transcript_id "Ledus.S4G099600.t1"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	transcript	7215057	7218856	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	start_codon	7215057	7215059	.	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7215057	7215114	0.87	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7215057	7215114	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7215115	7215294	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7215295	7215362	1	+	2	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7215295	7215362	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7215363	7215511	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7215512	7215586	1	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7215512	7215586	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7215587	7215667	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7215668	7215787	1	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7215668	7215787	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7215788	7215880	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7215881	7215940	1	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7215881	7215940	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7215941	7216051	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7216052	7216168	1	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7216052	7216168	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7216169	7216311	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7216312	7216419	1	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7216312	7216419	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7216420	7216503	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7216504	7216755	1	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7216504	7216755	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7216756	7216843	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7216844	7216963	0.94	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7216844	7216963	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7216964	7217082	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7217083	7217193	1	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7217083	7217193	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7217194	7217263	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7217264	7217349	1	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7217264	7217349	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7217350	7217462	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7217463	7217580	1	+	1	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7217463	7217580	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7217581	7217668	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7217669	7217772	1	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7217669	7217772	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7217773	7217858	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7217859	7217958	1	+	1	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7217859	7217958	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7217959	7218073	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7218074	7218165	1	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7218074	7218165	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7218166	7218277	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7218278	7218495	1	+	1	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7218278	7218495	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7218496	7218572	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7218573	7218671	1	+	2	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7218573	7218671	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	intron	7218672	7218830	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	CDS	7218831	7218856	1	+	2	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	exon	7218831	7218856	.	+	.	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
Ledus.S4	AUGUSTUS	stop_codon	7218857	7218859	.	+	0	transcript_id "Ledus.S4G099600.t2"; gene_id "Ledus.S4G099600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10503.t1 is derived from g11533.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15645605	15646250	.	-	.	Ledus.S3G198000
Ledus.S3	AUGUSTUS	transcript	15645605	15646250	.	-	.	transcript_id "Ledus.S3G198000.t1"; gene_id "Ledus.S3G198000"
Ledus.S3	AUGUSTUS	stop_codon	15645602	15645604	.	-	0	transcript_id "Ledus.S3G198000.t1"; gene_id "Ledus.S3G198000"
Ledus.S3	AUGUSTUS	CDS	15645605	15645688	1	-	0	transcript_id "Ledus.S3G198000.t1"; gene_id "Ledus.S3G198000"
Ledus.S3	AUGUSTUS	exon	15645605	15645688	.	-	.	transcript_id "Ledus.S3G198000.t1"; gene_id "Ledus.S3G198000"
Ledus.S3	AUGUSTUS	intron	15645689	15646008	.	-	.	transcript_id "Ledus.S3G198000.t1"; gene_id "Ledus.S3G198000"
Ledus.S3	AUGUSTUS	CDS	15646009	15646132	1	-	1	transcript_id "Ledus.S3G198000.t1"; gene_id "Ledus.S3G198000"
Ledus.S3	AUGUSTUS	exon	15646009	15646132	.	-	.	transcript_id "Ledus.S3G198000.t1"; gene_id "Ledus.S3G198000"
Ledus.S3	AUGUSTUS	intron	15646133	15646221	.	-	.	transcript_id "Ledus.S3G198000.t1"; gene_id "Ledus.S3G198000"
Ledus.S3	AUGUSTUS	CDS	15646222	15646250	1	-	0	transcript_id "Ledus.S3G198000.t1"; gene_id "Ledus.S3G198000"
Ledus.S3	AUGUSTUS	exon	15646222	15646250	.	-	.	transcript_id "Ledus.S3G198000.t1"; gene_id "Ledus.S3G198000"
Ledus.S3	AUGUSTUS	start_codon	15646248	15646250	.	-	0	transcript_id "Ledus.S3G198000.t1"; gene_id "Ledus.S3G198000"
# This transcript jg12387.t2 is derived from g6008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12388.t1 is derived from g6009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11589356	11590420	.	-	.	Ledus.S4G154400
Ledus.S4	AUGUSTUS	transcript	11589356	11590420	.	-	.	transcript_id "Ledus.S4G154400.t1"; gene_id "Ledus.S4G154400"
Ledus.S4	AUGUSTUS	stop_codon	11589353	11589355	.	-	0	transcript_id "Ledus.S4G154400.t1"; gene_id "Ledus.S4G154400"
Ledus.S4	AUGUSTUS	CDS	11589356	11589982	0.99	-	0	transcript_id "Ledus.S4G154400.t1"; gene_id "Ledus.S4G154400"
Ledus.S4	AUGUSTUS	exon	11589356	11589982	.	-	.	transcript_id "Ledus.S4G154400.t1"; gene_id "Ledus.S4G154400"
Ledus.S4	AUGUSTUS	intron	11589983	11590081	.	-	.	transcript_id "Ledus.S4G154400.t1"; gene_id "Ledus.S4G154400"
Ledus.S4	AUGUSTUS	CDS	11590082	11590420	0.99	-	0	transcript_id "Ledus.S4G154400.t1"; gene_id "Ledus.S4G154400"
Ledus.S4	AUGUSTUS	exon	11590082	11590420	.	-	.	transcript_id "Ledus.S4G154400.t1"; gene_id "Ledus.S4G154400"
Ledus.S4	AUGUSTUS	start_codon	11590418	11590420	.	-	0	transcript_id "Ledus.S4G154400.t1"; gene_id "Ledus.S4G154400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10526.t1 is derived from g11556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15942989	15943420	.	-	.	Ledus.S3G200300
Ledus.S3	AUGUSTUS	transcript	15942989	15943420	.	-	.	transcript_id "Ledus.S3G200300.t1"; gene_id "Ledus.S3G200300"
Ledus.S3	AUGUSTUS	stop_codon	15942986	15942988	.	-	0	transcript_id "Ledus.S3G200300.t1"; gene_id "Ledus.S3G200300"
Ledus.S3	AUGUSTUS	CDS	15942989	15943137	0.99	-	2	transcript_id "Ledus.S3G200300.t1"; gene_id "Ledus.S3G200300"
Ledus.S3	AUGUSTUS	exon	15942989	15943137	.	-	.	transcript_id "Ledus.S3G200300.t1"; gene_id "Ledus.S3G200300"
Ledus.S3	AUGUSTUS	intron	15943138	15943275	.	-	.	transcript_id "Ledus.S3G200300.t1"; gene_id "Ledus.S3G200300"
Ledus.S3	AUGUSTUS	CDS	15943276	15943420	0.97	-	0	transcript_id "Ledus.S3G200300.t1"; gene_id "Ledus.S3G200300"
Ledus.S3	AUGUSTUS	exon	15943276	15943420	.	-	.	transcript_id "Ledus.S3G200300.t1"; gene_id "Ledus.S3G200300"
Ledus.S3	AUGUSTUS	start_codon	15943418	15943420	.	-	0	transcript_id "Ledus.S3G200300.t1"; gene_id "Ledus.S3G200300"
# This transcript jg2964.t2 is derived from g399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2965.t1 is derived from g400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4971027	4976194	.	-	.	Ledus.S1G038600
Ledus.S1	AUGUSTUS	transcript	4971027	4976194	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	stop_codon	4971024	4971026	.	-	0	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4971027	4971479	1	-	0	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4971027	4971479	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4971480	4971576	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4971577	4971915	1	-	0	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4971577	4971915	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4971916	4972043	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4972044	4972397	0.99	-	0	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4972044	4972397	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4972398	4972521	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4972522	4972664	0.87	-	2	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4972522	4972664	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4972665	4973039	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4973040	4973198	0.85	-	2	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4973040	4973198	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4973199	4973385	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4973386	4973541	0.61	-	2	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4973386	4973541	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4973542	4973660	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4973661	4973731	1	-	1	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4973661	4973731	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4973732	4973812	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4973813	4973883	0.99	-	0	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4973813	4973883	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4973884	4974003	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4974004	4974102	0.97	-	0	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4974004	4974102	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4974103	4974223	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4974224	4974360	1	-	2	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4974224	4974360	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4974361	4974497	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4974498	4974555	1	-	0	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4974498	4974555	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4974556	4974885	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4974886	4974967	1	-	1	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4974886	4974967	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4974968	4975244	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4975245	4975641	0.97	-	2	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4975245	4975641	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4975642	4975713	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4975714	4976194	0.55	-	0	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4975714	4976194	.	-	.	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	start_codon	4976192	4976194	.	-	0	transcript_id "Ledus.S1G038600.t1"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	transcript	4971027	4976194	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	stop_codon	4971024	4971026	.	-	0	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4971027	4971479	0.99	-	0	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4971027	4971479	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4971480	4971576	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4971577	4971915	1	-	0	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4971577	4971915	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4971916	4972043	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4972044	4972397	0.99	-	0	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4972044	4972397	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4972398	4972521	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4972522	4972664	0.82	-	2	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4972522	4972664	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4972665	4972865	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4972866	4973198	0.82	-	2	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4972866	4973198	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4973199	4973385	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4973386	4973541	0.59	-	2	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4973386	4973541	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4973542	4973660	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4973661	4973731	1	-	1	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4973661	4973731	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4973732	4973812	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4973813	4973883	1	-	0	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4973813	4973883	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4973884	4974003	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4974004	4974102	0.98	-	0	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4974004	4974102	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4974103	4974223	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4974224	4974360	1	-	2	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4974224	4974360	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4974361	4974497	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4974498	4974555	1	-	0	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4974498	4974555	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4974556	4974885	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4974886	4974967	1	-	1	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4974886	4974967	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4974968	4975244	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4975245	4975641	0.97	-	2	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4975245	4975641	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	intron	4975642	4975713	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	CDS	4975714	4976194	0.43	-	0	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	exon	4975714	4976194	.	-	.	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
Ledus.S1	AUGUSTUS	start_codon	4976192	4976194	.	-	0	transcript_id "Ledus.S1G038600.t2"; gene_id "Ledus.S1G038600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5930.t1 is derived from g3373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27885191	27890865	.	+	.	Ledus.S1G335100
Ledus.S1	AUGUSTUS	transcript	27885191	27890865	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	start_codon	27885191	27885193	.	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27885191	27885212	0.29	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27885191	27885212	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27885213	27885479	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27885480	27885880	0.44	+	2	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27885480	27885880	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27885881	27886091	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27886092	27886298	1	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27886092	27886298	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27886299	27886654	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27886655	27886738	1	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27886655	27886738	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27886739	27886978	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27886979	27887038	1	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27886979	27887038	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27887039	27887198	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27887199	27887243	1	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27887199	27887243	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27887244	27887388	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27887389	27887588	0.99	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27887389	27887588	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27887589	27887728	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27887729	27888298	0.99	+	1	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27887729	27888298	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27888299	27888420	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27888421	27888532	1	+	1	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27888421	27888532	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27888533	27888650	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27888651	27888836	1	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27888651	27888836	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27888837	27889017	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27889018	27889107	1	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27889018	27889107	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27889108	27889240	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27889241	27889303	1	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27889241	27889303	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27889304	27889554	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27889555	27889629	1	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27889555	27889629	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27889630	27889720	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27889721	27889771	1	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27889721	27889771	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27889772	27889922	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27889923	27890000	1	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27889923	27890000	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27890001	27890095	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27890096	27890230	1	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27890096	27890230	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27890231	27890381	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27890382	27890489	0.93	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27890382	27890489	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27890490	27890599	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27890600	27890665	1	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27890600	27890665	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	intron	27890666	27890799	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	CDS	27890800	27890865	0.99	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	exon	27890800	27890865	.	+	.	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
Ledus.S1	AUGUSTUS	stop_codon	27890866	27890868	.	+	0	transcript_id "Ledus.S1G335100.t1"; gene_id "Ledus.S1G335100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3437.t1 is derived from g872.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8369263	8372699	.	+	.	Ledus.S1G085800
Ledus.S1	AUGUSTUS	transcript	8369263	8372699	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	start_codon	8369263	8369265	.	+	0	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	CDS	8369263	8370300	0.91	+	0	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	exon	8369263	8370300	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	intron	8370301	8370386	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	CDS	8370387	8370521	1	+	0	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	exon	8370387	8370521	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	intron	8370522	8370639	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	CDS	8370640	8370963	0.87	+	0	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	exon	8370640	8370963	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	intron	8370964	8371107	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	CDS	8371108	8371171	1	+	0	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	exon	8371108	8371171	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	intron	8371172	8371280	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	CDS	8371281	8371498	0.86	+	2	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	exon	8371281	8371498	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	intron	8371499	8371598	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	CDS	8371599	8371715	0.48	+	0	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	exon	8371599	8371715	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	intron	8371716	8371788	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	CDS	8371789	8371894	0.95	+	0	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	exon	8371789	8371894	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	intron	8371895	8372006	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	CDS	8372007	8372218	0.94	+	2	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	exon	8372007	8372218	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	intron	8372219	8372319	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	CDS	8372320	8372423	0.99	+	0	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	exon	8372320	8372423	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	intron	8372424	8372512	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	CDS	8372513	8372699	0.9	+	1	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	exon	8372513	8372699	.	+	.	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
Ledus.S1	AUGUSTUS	stop_codon	8372700	8372702	.	+	0	transcript_id "Ledus.S1G085800.t1"; gene_id "Ledus.S1G085800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5382.t1 is derived from g2821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23946341	23949720	.	-	.	Ledus.S1G280300
Ledus.S1	AUGUSTUS	transcript	23946341	23949720	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	stop_codon	23946338	23946340	.	-	0	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23946341	23947374	0.74	-	2	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23946341	23947374	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23947375	23947461	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23947462	23947522	1	-	0	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23947462	23947522	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23947523	23947891	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23947892	23948230	1	-	0	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23947892	23948230	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23948231	23948317	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23948318	23948482	0.55	-	0	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23948318	23948482	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23948483	23949108	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23949109	23949319	0.4	-	1	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23949109	23949319	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23949320	23949408	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23949409	23949592	0.29	-	2	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23949409	23949592	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23949593	23949671	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23949672	23949720	0.2	-	0	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23949672	23949720	.	-	.	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	start_codon	23949718	23949720	.	-	0	transcript_id "Ledus.S1G280300.t1"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	transcript	23946341	23949720	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	stop_codon	23946338	23946340	.	-	0	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23946341	23947374	0.76	-	2	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23946341	23947374	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23947375	23947461	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23947462	23947527	0.74	-	2	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23947462	23947527	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23947528	23947590	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23947591	23947648	0.41	-	0	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23947591	23947648	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23947649	23947891	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23947892	23948230	1	-	0	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23947892	23948230	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23948231	23948317	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23948318	23948482	0.5	-	0	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23948318	23948482	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23948483	23949108	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23949109	23949319	0.44	-	1	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23949109	23949319	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23949320	23949408	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23949409	23949592	0.34	-	2	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23949409	23949592	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	intron	23949593	23949671	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	CDS	23949672	23949720	0.24	-	0	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	exon	23949672	23949720	.	-	.	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
Ledus.S1	AUGUSTUS	start_codon	23949718	23949720	.	-	0	transcript_id "Ledus.S1G280300.t2"; gene_id "Ledus.S1G280300"
# This transcript jg1133.t2 is derived from g7994.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1134.t1 is derived from g7995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7859470	7861931	.	+	.	Ledus.S2G101600
Ledus.S2	AUGUSTUS	transcript	7859470	7861931	.	+	.	transcript_id "Ledus.S2G101600.t1"; gene_id "Ledus.S2G101600"
Ledus.S2	AUGUSTUS	start_codon	7859470	7859472	.	+	0	transcript_id "Ledus.S2G101600.t1"; gene_id "Ledus.S2G101600"
Ledus.S2	AUGUSTUS	CDS	7859470	7859899	0.93	+	0	transcript_id "Ledus.S2G101600.t1"; gene_id "Ledus.S2G101600"
Ledus.S2	AUGUSTUS	exon	7859470	7859899	.	+	.	transcript_id "Ledus.S2G101600.t1"; gene_id "Ledus.S2G101600"
Ledus.S2	AUGUSTUS	intron	7859900	7860028	.	+	.	transcript_id "Ledus.S2G101600.t1"; gene_id "Ledus.S2G101600"
Ledus.S2	AUGUSTUS	CDS	7860029	7860648	1	+	2	transcript_id "Ledus.S2G101600.t1"; gene_id "Ledus.S2G101600"
Ledus.S2	AUGUSTUS	exon	7860029	7860648	.	+	.	transcript_id "Ledus.S2G101600.t1"; gene_id "Ledus.S2G101600"
Ledus.S2	AUGUSTUS	intron	7860649	7860743	.	+	.	transcript_id "Ledus.S2G101600.t1"; gene_id "Ledus.S2G101600"
Ledus.S2	AUGUSTUS	CDS	7860744	7861931	1	+	0	transcript_id "Ledus.S2G101600.t1"; gene_id "Ledus.S2G101600"
Ledus.S2	AUGUSTUS	exon	7860744	7861931	.	+	.	transcript_id "Ledus.S2G101600.t1"; gene_id "Ledus.S2G101600"
Ledus.S2	AUGUSTUS	stop_codon	7861932	7861934	.	+	0	transcript_id "Ledus.S2G101600.t1"; gene_id "Ledus.S2G101600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3371.t1 is derived from g806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7894080	7894376	.	-	.	Ledus.S1G079200
Ledus.S1	AUGUSTUS	transcript	7894080	7894376	.	-	.	transcript_id "Ledus.S1G079200.t1"; gene_id "Ledus.S1G079200"
Ledus.S1	AUGUSTUS	stop_codon	7894077	7894079	.	-	0	transcript_id "Ledus.S1G079200.t1"; gene_id "Ledus.S1G079200"
Ledus.S1	AUGUSTUS	CDS	7894080	7894376	0.63	-	0	transcript_id "Ledus.S1G079200.t1"; gene_id "Ledus.S1G079200"
Ledus.S1	AUGUSTUS	exon	7894080	7894376	.	-	.	transcript_id "Ledus.S1G079200.t1"; gene_id "Ledus.S1G079200"
Ledus.S1	AUGUSTUS	start_codon	7894374	7894376	.	-	0	transcript_id "Ledus.S1G079200.t1"; gene_id "Ledus.S1G079200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1460.t1 is derived from g8321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10307330	10313648	.	-	.	Ledus.S2G134200
Ledus.S2	AUGUSTUS	transcript	10307330	10313648	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	stop_codon	10307327	10307329	.	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10307330	10307479	0.89	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10307330	10307479	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10307480	10307569	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10307570	10307693	1	-	1	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10307570	10307693	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10307694	10307774	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10307775	10307866	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10307775	10307866	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10307867	10307960	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10307961	10308084	1	-	1	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10307961	10308084	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10308085	10308238	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10308239	10308312	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10308239	10308312	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10308313	10308432	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10308433	10308594	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10308433	10308594	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10308595	10308735	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10308736	10308840	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10308736	10308840	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10308841	10308930	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10308931	10308989	1	-	2	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10308931	10308989	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10308990	10309115	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10309116	10309124	0.97	-	2	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10309116	10309124	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10309125	10309234	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10309235	10309262	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10309235	10309262	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10309263	10309579	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10309580	10309636	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10309580	10309636	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10309637	10309786	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10309787	10309882	0.96	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10309787	10309882	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10309883	10309986	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10309987	10310094	0.99	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10309987	10310094	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10310095	10310407	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10310408	10310614	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10310408	10310614	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10310615	10310763	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10310764	10310874	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10310764	10310874	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10310875	10311033	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10311034	10311132	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10311034	10311132	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10311133	10311255	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10311256	10311357	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10311256	10311357	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10311358	10311633	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10311634	10311702	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10311634	10311702	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10311703	10311848	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10311849	10311984	1	-	1	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10311849	10311984	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10311985	10312078	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10312079	10312170	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10312079	10312170	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10312171	10312347	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10312348	10312448	1	-	2	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10312348	10312448	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10312449	10312545	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10312546	10312660	1	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10312546	10312660	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	intron	10312661	10312871	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	CDS	10312872	10313648	0.99	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	exon	10312872	10313648	.	-	.	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
Ledus.S2	AUGUSTUS	start_codon	10313646	10313648	.	-	0	transcript_id "Ledus.S2G134200.t1"; gene_id "Ledus.S2G134200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9528.t1 is derived from g10558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7593023	7593695	.	+	.	Ledus.S3G100500
Ledus.S3	AUGUSTUS	transcript	7593023	7593695	.	+	.	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	start_codon	7593023	7593025	.	+	0	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	CDS	7593023	7593185	0.98	+	0	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	exon	7593023	7593185	.	+	.	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	intron	7593186	7593317	.	+	.	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	CDS	7593318	7593326	0.9	+	2	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	exon	7593318	7593326	.	+	.	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	intron	7593327	7593439	.	+	.	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	CDS	7593440	7593523	0.83	+	2	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	exon	7593440	7593523	.	+	.	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	intron	7593524	7593672	.	+	.	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	CDS	7593673	7593695	0.97	+	2	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	exon	7593673	7593695	.	+	.	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
Ledus.S3	AUGUSTUS	stop_codon	7593696	7593698	.	+	0	transcript_id "Ledus.S3G100500.t1"; gene_id "Ledus.S3G100500"
# This transcript jg533.t2 is derived from g7394.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg534.t1 is derived from g7395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3076228	3078229	.	+	.	Ledus.S2G041600
Ledus.S2	AUGUSTUS	transcript	3076228	3078229	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	start_codon	3076228	3076230	.	+	0	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	CDS	3076228	3076290	0.96	+	0	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	exon	3076228	3076290	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	intron	3076291	3076361	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	CDS	3076362	3076534	0.99	+	0	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	exon	3076362	3076534	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	intron	3076535	3076629	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	CDS	3076630	3077034	0.84	+	1	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	exon	3076630	3077034	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	intron	3077035	3077127	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	CDS	3077128	3077524	0.85	+	1	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	exon	3077128	3077524	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	intron	3077525	3077600	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	CDS	3077601	3077706	1	+	0	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	exon	3077601	3077706	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	intron	3077707	3077791	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	CDS	3077792	3077883	0.98	+	2	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	exon	3077792	3077883	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	intron	3077884	3077983	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	CDS	3077984	3078052	0.71	+	0	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	exon	3077984	3078052	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	intron	3078053	3078133	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	CDS	3078134	3078229	0.82	+	0	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	exon	3078134	3078229	.	+	.	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
Ledus.S2	AUGUSTUS	stop_codon	3078230	3078232	.	+	0	transcript_id "Ledus.S2G041600.t1"; gene_id "Ledus.S2G041600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10808.t1 is derived from g11840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17867248	17869537	.	+	.	Ledus.S3G228500
Ledus.S3	AUGUSTUS	transcript	17867248	17869537	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	start_codon	17867248	17867250	.	+	0	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17867248	17867259	0.7	+	0	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17867248	17867259	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	intron	17867260	17867343	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17867344	17867425	1	+	0	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17867344	17867425	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	intron	17867426	17867492	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17867493	17867555	1	+	2	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17867493	17867555	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	intron	17867556	17867641	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17867642	17867686	1	+	2	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17867642	17867686	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	intron	17867687	17867904	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17867905	17868027	1	+	2	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17867905	17868027	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	intron	17868028	17868121	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17868122	17868267	1	+	2	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17868122	17868267	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	intron	17868268	17868356	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17868357	17868504	1	+	0	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17868357	17868504	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	intron	17868505	17868596	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17868597	17868680	1	+	2	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17868597	17868680	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	intron	17868681	17868752	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17868753	17868868	1	+	2	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17868753	17868868	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	intron	17868869	17868939	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17868940	17868998	1	+	0	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17868940	17868998	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	intron	17868999	17869071	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17869072	17869162	1	+	1	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17869072	17869162	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	intron	17869163	17869236	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17869237	17869391	1	+	0	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17869237	17869391	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	intron	17869392	17869479	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	CDS	17869480	17869537	0.96	+	1	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	exon	17869480	17869537	.	+	.	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
Ledus.S3	AUGUSTUS	stop_codon	17869538	17869540	.	+	0	transcript_id "Ledus.S3G228500.t1"; gene_id "Ledus.S3G228500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8838.t1 is derived from g9868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2223630	2225132	.	+	.	Ledus.S3G031500
Ledus.S3	AUGUSTUS	transcript	2223630	2225132	.	+	.	transcript_id "Ledus.S3G031500.t1"; gene_id "Ledus.S3G031500"
Ledus.S3	AUGUSTUS	start_codon	2223630	2223632	.	+	0	transcript_id "Ledus.S3G031500.t1"; gene_id "Ledus.S3G031500"
Ledus.S3	AUGUSTUS	CDS	2223630	2224384	0.7	+	0	transcript_id "Ledus.S3G031500.t1"; gene_id "Ledus.S3G031500"
Ledus.S3	AUGUSTUS	exon	2223630	2224384	.	+	.	transcript_id "Ledus.S3G031500.t1"; gene_id "Ledus.S3G031500"
Ledus.S3	AUGUSTUS	intron	2224385	2224469	.	+	.	transcript_id "Ledus.S3G031500.t1"; gene_id "Ledus.S3G031500"
Ledus.S3	AUGUSTUS	CDS	2224470	2224637	0.95	+	1	transcript_id "Ledus.S3G031500.t1"; gene_id "Ledus.S3G031500"
Ledus.S3	AUGUSTUS	exon	2224470	2224637	.	+	.	transcript_id "Ledus.S3G031500.t1"; gene_id "Ledus.S3G031500"
Ledus.S3	AUGUSTUS	intron	2224638	2224708	.	+	.	transcript_id "Ledus.S3G031500.t1"; gene_id "Ledus.S3G031500"
Ledus.S3	AUGUSTUS	CDS	2224709	2225132	1	+	1	transcript_id "Ledus.S3G031500.t1"; gene_id "Ledus.S3G031500"
Ledus.S3	AUGUSTUS	exon	2224709	2225132	.	+	.	transcript_id "Ledus.S3G031500.t1"; gene_id "Ledus.S3G031500"
Ledus.S3	AUGUSTUS	stop_codon	2225133	2225135	.	+	0	transcript_id "Ledus.S3G031500.t1"; gene_id "Ledus.S3G031500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6577.t1 is derived from g4020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32463483	32465885	.	-	.	Ledus.S1G399800
Ledus.S1	AUGUSTUS	transcript	32463483	32465885	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	stop_codon	32463480	32463482	.	-	0	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	CDS	32463483	32463492	1	-	1	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	exon	32463483	32463492	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	intron	32463493	32463729	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	CDS	32463730	32464165	0.56	-	2	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	exon	32463730	32464165	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	intron	32464166	32464275	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	CDS	32464276	32464357	1	-	0	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	exon	32464276	32464357	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	intron	32464358	32464475	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	CDS	32464476	32464559	1	-	0	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	exon	32464476	32464559	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	intron	32464560	32464692	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	CDS	32464693	32464872	1	-	0	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	exon	32464693	32464872	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	intron	32464873	32464965	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	CDS	32464966	32465125	1	-	1	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	exon	32464966	32465125	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	intron	32465126	32465246	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	CDS	32465247	32465566	0.34	-	0	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	exon	32465247	32465566	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	intron	32465567	32465747	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	CDS	32465748	32465885	0.84	-	0	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	exon	32465748	32465885	.	-	.	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
Ledus.S1	AUGUSTUS	start_codon	32465883	32465885	.	-	0	transcript_id "Ledus.S1G399800.t1"; gene_id "Ledus.S1G399800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1020.t1 is derived from g7881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6794671	6795933	.	+	.	Ledus.S2G090200
Ledus.S2	AUGUSTUS	transcript	6794671	6795933	.	+	.	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	start_codon	6794671	6794673	.	+	0	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	CDS	6794671	6794937	0.82	+	0	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	exon	6794671	6794937	.	+	.	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	intron	6794938	6795080	.	+	.	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	CDS	6795081	6795162	1	+	0	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	exon	6795081	6795162	.	+	.	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	intron	6795163	6795333	.	+	.	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	CDS	6795334	6795416	1	+	2	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	exon	6795334	6795416	.	+	.	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	intron	6795417	6795502	.	+	.	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	CDS	6795503	6795594	0.95	+	0	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	exon	6795503	6795594	.	+	.	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	intron	6795595	6795702	.	+	.	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	CDS	6795703	6795808	0.9	+	1	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	exon	6795703	6795808	.	+	.	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	intron	6795809	6795915	.	+	.	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	CDS	6795916	6795933	0.72	+	0	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	exon	6795916	6795933	.	+	.	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
Ledus.S2	AUGUSTUS	stop_codon	6795934	6795936	.	+	0	transcript_id "Ledus.S2G090200.t1"; gene_id "Ledus.S2G090200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5173.t1 is derived from g2612.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22155497	22157062	.	+	.	Ledus.S1G259400
Ledus.S1	AUGUSTUS	transcript	22155497	22157062	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	start_codon	22155497	22155499	.	+	0	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	CDS	22155497	22155703	0.67	+	0	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	exon	22155497	22155703	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	intron	22155704	22155787	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	CDS	22155788	22155947	1	+	0	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	exon	22155788	22155947	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	intron	22155948	22156043	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	CDS	22156044	22156103	1	+	2	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	exon	22156044	22156103	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	intron	22156104	22156201	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	CDS	22156202	22156279	1	+	2	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	exon	22156202	22156279	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	intron	22156280	22156366	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	CDS	22156367	22156449	1	+	2	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	exon	22156367	22156449	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	intron	22156450	22156533	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	CDS	22156534	22156609	1	+	0	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	exon	22156534	22156609	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	intron	22156610	22156690	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	CDS	22156691	22156809	1	+	2	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	exon	22156691	22156809	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	intron	22156810	22156914	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	CDS	22156915	22156959	1	+	0	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	exon	22156915	22156959	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	intron	22156960	22157038	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	CDS	22157039	22157062	1	+	0	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	exon	22157039	22157062	.	+	.	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
Ledus.S1	AUGUSTUS	stop_codon	22157063	22157065	.	+	0	transcript_id "Ledus.S1G259400.t1"; gene_id "Ledus.S1G259400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9420.t1 is derived from g10450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6624879	6627659	.	-	.	Ledus.S3G089700
Ledus.S3	AUGUSTUS	transcript	6624879	6627659	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	stop_codon	6624876	6624878	.	-	0	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	CDS	6624879	6625140	0.99	-	1	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	exon	6624879	6625140	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	intron	6625141	6625210	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	CDS	6625211	6625353	1	-	0	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	exon	6625211	6625353	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	intron	6625354	6625457	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	CDS	6625458	6625655	1	-	0	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	exon	6625458	6625655	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	intron	6625656	6625779	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	CDS	6625780	6626047	1	-	1	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	exon	6625780	6626047	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	intron	6626048	6626167	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	CDS	6626168	6627192	0.63	-	0	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	exon	6626168	6627192	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	intron	6627193	6627291	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	CDS	6627292	6627371	0.99	-	2	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	exon	6627292	6627371	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	intron	6627372	6627433	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	CDS	6627434	6627659	0.79	-	0	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	exon	6627434	6627659	.	-	.	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
Ledus.S3	AUGUSTUS	start_codon	6627657	6627659	.	-	0	transcript_id "Ledus.S3G089700.t1"; gene_id "Ledus.S3G089700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5793.t1 is derived from g3235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26896638	26902127	.	+	.	Ledus.S1G321400
Ledus.S1	AUGUSTUS	transcript	26896638	26902127	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	start_codon	26896638	26896640	.	+	0	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	CDS	26896638	26896847	0.36	+	0	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	exon	26896638	26896847	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	intron	26896848	26896990	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	CDS	26896991	26897039	1	+	0	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	exon	26896991	26897039	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	intron	26897040	26897134	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	CDS	26897135	26899464	0.96	+	2	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	exon	26897135	26899464	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	intron	26899465	26899596	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	CDS	26899597	26899665	0.93	+	0	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	exon	26899597	26899665	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	intron	26899666	26899812	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	CDS	26899813	26900373	0.9	+	0	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	exon	26899813	26900373	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	intron	26900374	26900462	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	CDS	26900463	26900562	0.91	+	0	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	exon	26900463	26900562	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	intron	26900563	26900740	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	CDS	26900741	26901111	0.44	+	2	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	exon	26900741	26901111	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	intron	26901112	26901201	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	CDS	26901202	26901426	1	+	0	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	exon	26901202	26901426	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	intron	26901427	26901493	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	CDS	26901494	26901637	0.53	+	0	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	exon	26901494	26901637	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	intron	26901638	26901738	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	CDS	26901739	26901931	0.57	+	0	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	exon	26901739	26901931	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	intron	26901932	26902017	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	CDS	26902018	26902127	1	+	2	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	exon	26902018	26902127	.	+	.	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
Ledus.S1	AUGUSTUS	stop_codon	26902128	26902130	.	+	0	transcript_id "Ledus.S1G321400.t1"; gene_id "Ledus.S1G321400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12679.t1 is derived from g6301.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13841088	13842316	.	+	.	Ledus.S4G183500
Ledus.S4	AUGUSTUS	transcript	13841088	13842316	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	start_codon	13841088	13841090	.	+	0	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13841088	13841234	1	+	0	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13841088	13841234	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	intron	13841235	13841304	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13841305	13841478	1	+	0	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13841305	13841478	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	intron	13841479	13841571	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13841572	13841641	1	+	0	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13841572	13841641	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	intron	13841642	13841722	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13841723	13841846	0.61	+	2	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13841723	13841846	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	intron	13841847	13841919	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13841920	13841972	1	+	1	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13841920	13841972	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	intron	13841973	13842062	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13842063	13842104	1	+	2	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13842063	13842104	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	intron	13842105	13842188	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13842189	13842316	1	+	2	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13842189	13842316	.	+	.	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	stop_codon	13842317	13842319	.	+	0	transcript_id "Ledus.S4G183500.t1"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	transcript	13841088	13842316	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	start_codon	13841088	13841090	.	+	0	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13841088	13841234	0.99	+	0	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13841088	13841234	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	intron	13841235	13841313	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13841314	13841478	1	+	0	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13841314	13841478	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	intron	13841479	13841571	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13841572	13841641	1	+	0	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13841572	13841641	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	intron	13841642	13841722	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13841723	13841846	0.6	+	2	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13841723	13841846	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	intron	13841847	13841919	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13841920	13841972	1	+	1	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13841920	13841972	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	intron	13841973	13842062	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13842063	13842104	1	+	2	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13842063	13842104	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	intron	13842105	13842188	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	CDS	13842189	13842316	1	+	2	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	exon	13842189	13842316	.	+	.	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
Ledus.S4	AUGUSTUS	stop_codon	13842317	13842319	.	+	0	transcript_id "Ledus.S4G183500.t2"; gene_id "Ledus.S4G183500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg918.t1 is derived from g7779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6171385	6174303	.	-	.	Ledus.S2G080000
Ledus.S2	AUGUSTUS	transcript	6173768	6174303	.	-	.	transcript_id "Ledus.S2G080000.t1"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	stop_codon	6173765	6173767	.	-	0	transcript_id "Ledus.S2G080000.t1"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	CDS	6173768	6173781	0.87	-	2	transcript_id "Ledus.S2G080000.t1"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	exon	6173768	6173781	.	-	.	transcript_id "Ledus.S2G080000.t1"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	intron	6173782	6173930	.	-	.	transcript_id "Ledus.S2G080000.t1"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	CDS	6173931	6174303	0.83	-	0	transcript_id "Ledus.S2G080000.t1"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	exon	6173931	6174303	.	-	.	transcript_id "Ledus.S2G080000.t1"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	start_codon	6174301	6174303	.	-	0	transcript_id "Ledus.S2G080000.t1"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	transcript	6173475	6174303	.	-	.	transcript_id "Ledus.S2G080000.t2"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	stop_codon	6173472	6173474	.	-	0	transcript_id "Ledus.S2G080000.t2"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	CDS	6173475	6173498	0.57	-	0	transcript_id "Ledus.S2G080000.t2"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	exon	6173475	6173498	.	-	.	transcript_id "Ledus.S2G080000.t2"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	intron	6173499	6173664	.	-	.	transcript_id "Ledus.S2G080000.t2"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	CDS	6173665	6174303	0.62	-	0	transcript_id "Ledus.S2G080000.t2"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	exon	6173665	6174303	.	-	.	transcript_id "Ledus.S2G080000.t2"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	start_codon	6174301	6174303	.	-	0	transcript_id "Ledus.S2G080000.t2"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	transcript	6171385	6174303	.	-	.	transcript_id "Ledus.S2G080000.t3"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	stop_codon	6171382	6171384	.	-	0	transcript_id "Ledus.S2G080000.t3"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	CDS	6171385	6174303	0.57	-	0	transcript_id "Ledus.S2G080000.t3"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	exon	6171385	6174303	.	-	.	transcript_id "Ledus.S2G080000.t3"; gene_id "Ledus.S2G080000"
Ledus.S2	AUGUSTUS	start_codon	6174301	6174303	.	-	0	transcript_id "Ledus.S2G080000.t3"; gene_id "Ledus.S2G080000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9898.t1 is derived from g10928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11017698	11019250	.	-	.	Ledus.S3G137500
Ledus.S3	AUGUSTUS	transcript	11017698	11019250	.	-	.	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	stop_codon	11017695	11017697	.	-	0	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	CDS	11017698	11017872	1	-	1	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	exon	11017698	11017872	.	-	.	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	intron	11017873	11017964	.	-	.	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	CDS	11017965	11018174	1	-	1	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	exon	11017965	11018174	.	-	.	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	intron	11018175	11018274	.	-	.	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	CDS	11018275	11018552	0.94	-	0	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	exon	11018275	11018552	.	-	.	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	intron	11018553	11018698	.	-	.	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	CDS	11018699	11018710	0.94	-	0	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	exon	11018699	11018710	.	-	.	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	intron	11018711	11018883	.	-	.	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	CDS	11018884	11018958	1	-	0	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	exon	11018884	11018958	.	-	.	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	intron	11018959	11019235	.	-	.	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	CDS	11019236	11019250	1	-	0	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	exon	11019236	11019250	.	-	.	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	start_codon	11019248	11019250	.	-	0	transcript_id "Ledus.S3G137500.t1"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	transcript	11017698	11019250	.	-	.	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	stop_codon	11017695	11017697	.	-	0	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	CDS	11017698	11017872	1	-	1	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	exon	11017698	11017872	.	-	.	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	intron	11017873	11017964	.	-	.	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	CDS	11017965	11018174	1	-	1	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	exon	11017965	11018174	.	-	.	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	intron	11018175	11018274	.	-	.	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	CDS	11018275	11018517	0.89	-	1	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	exon	11018275	11018517	.	-	.	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	intron	11018518	11018627	.	-	.	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	CDS	11018628	11018641	0.88	-	0	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	exon	11018628	11018641	.	-	.	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	intron	11018642	11018883	.	-	.	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	CDS	11018884	11018958	1	-	0	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	exon	11018884	11018958	.	-	.	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	intron	11018959	11019235	.	-	.	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	CDS	11019236	11019250	1	-	0	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	exon	11019236	11019250	.	-	.	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
Ledus.S3	AUGUSTUS	start_codon	11019248	11019250	.	-	0	transcript_id "Ledus.S3G137500.t2"; gene_id "Ledus.S3G137500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5403.t1 is derived from g2842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24005554	24007217	.	+	.	Ledus.S1G282400
Ledus.S1	AUGUSTUS	transcript	24005554	24007217	.	+	.	transcript_id "Ledus.S1G282400.t1"; gene_id "Ledus.S1G282400"
Ledus.S1	AUGUSTUS	start_codon	24005554	24005556	.	+	0	transcript_id "Ledus.S1G282400.t1"; gene_id "Ledus.S1G282400"
Ledus.S1	AUGUSTUS	CDS	24005554	24006758	0.32	+	0	transcript_id "Ledus.S1G282400.t1"; gene_id "Ledus.S1G282400"
Ledus.S1	AUGUSTUS	exon	24005554	24006758	.	+	.	transcript_id "Ledus.S1G282400.t1"; gene_id "Ledus.S1G282400"
Ledus.S1	AUGUSTUS	intron	24006759	24006868	.	+	.	transcript_id "Ledus.S1G282400.t1"; gene_id "Ledus.S1G282400"
Ledus.S1	AUGUSTUS	CDS	24006869	24006935	0.37	+	1	transcript_id "Ledus.S1G282400.t1"; gene_id "Ledus.S1G282400"
Ledus.S1	AUGUSTUS	exon	24006869	24006935	.	+	.	transcript_id "Ledus.S1G282400.t1"; gene_id "Ledus.S1G282400"
Ledus.S1	AUGUSTUS	intron	24006936	24007100	.	+	.	transcript_id "Ledus.S1G282400.t1"; gene_id "Ledus.S1G282400"
Ledus.S1	AUGUSTUS	CDS	24007101	24007217	0.75	+	0	transcript_id "Ledus.S1G282400.t1"; gene_id "Ledus.S1G282400"
Ledus.S1	AUGUSTUS	exon	24007101	24007217	.	+	.	transcript_id "Ledus.S1G282400.t1"; gene_id "Ledus.S1G282400"
Ledus.S1	AUGUSTUS	stop_codon	24007218	24007220	.	+	0	transcript_id "Ledus.S1G282400.t1"; gene_id "Ledus.S1G282400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8048.t1 is derived from g12719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8784585	8785772	.	+	.	Ledus.S5G082600
Ledus.S5	AUGUSTUS	transcript	8784585	8785772	.	+	.	transcript_id "Ledus.S5G082600.t1"; gene_id "Ledus.S5G082600"
Ledus.S5	AUGUSTUS	start_codon	8784585	8784587	.	+	0	transcript_id "Ledus.S5G082600.t1"; gene_id "Ledus.S5G082600"
Ledus.S5	AUGUSTUS	CDS	8784585	8785772	0.46	+	0	transcript_id "Ledus.S5G082600.t1"; gene_id "Ledus.S5G082600"
Ledus.S5	AUGUSTUS	exon	8784585	8785772	.	+	.	transcript_id "Ledus.S5G082600.t1"; gene_id "Ledus.S5G082600"
Ledus.S5	AUGUSTUS	stop_codon	8785773	8785775	.	+	0	transcript_id "Ledus.S5G082600.t1"; gene_id "Ledus.S5G082600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4928.t1 is derived from g2366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20707442	20708101	.	+	.	Ledus.S1G234900
Ledus.S1	AUGUSTUS	transcript	20707442	20708101	.	+	.	transcript_id "Ledus.S1G234900.t1"; gene_id "Ledus.S1G234900"
Ledus.S1	AUGUSTUS	start_codon	20707442	20707444	.	+	0	transcript_id "Ledus.S1G234900.t1"; gene_id "Ledus.S1G234900"
Ledus.S1	AUGUSTUS	CDS	20707442	20708101	1	+	0	transcript_id "Ledus.S1G234900.t1"; gene_id "Ledus.S1G234900"
Ledus.S1	AUGUSTUS	exon	20707442	20708101	.	+	.	transcript_id "Ledus.S1G234900.t1"; gene_id "Ledus.S1G234900"
Ledus.S1	AUGUSTUS	stop_codon	20708102	20708104	.	+	0	transcript_id "Ledus.S1G234900.t1"; gene_id "Ledus.S1G234900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg786.t1 is derived from g7647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5079958	5080750	.	-	.	Ledus.S2G066800
Ledus.S2	AUGUSTUS	transcript	5079958	5080750	.	-	.	transcript_id "Ledus.S2G066800.t1"; gene_id "Ledus.S2G066800"
Ledus.S2	AUGUSTUS	stop_codon	5079955	5079957	.	-	0	transcript_id "Ledus.S2G066800.t1"; gene_id "Ledus.S2G066800"
Ledus.S2	AUGUSTUS	CDS	5079958	5080351	1	-	1	transcript_id "Ledus.S2G066800.t1"; gene_id "Ledus.S2G066800"
Ledus.S2	AUGUSTUS	exon	5079958	5080351	.	-	.	transcript_id "Ledus.S2G066800.t1"; gene_id "Ledus.S2G066800"
Ledus.S2	AUGUSTUS	intron	5080352	5080436	.	-	.	transcript_id "Ledus.S2G066800.t1"; gene_id "Ledus.S2G066800"
Ledus.S2	AUGUSTUS	CDS	5080437	5080750	0.61	-	0	transcript_id "Ledus.S2G066800.t1"; gene_id "Ledus.S2G066800"
Ledus.S2	AUGUSTUS	exon	5080437	5080750	.	-	.	transcript_id "Ledus.S2G066800.t1"; gene_id "Ledus.S2G066800"
Ledus.S2	AUGUSTUS	start_codon	5080748	5080750	.	-	0	transcript_id "Ledus.S2G066800.t1"; gene_id "Ledus.S2G066800"
# This transcript jg333.t2 is derived from g7194.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg334.t1 is derived from g7195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1793490	1795873	.	+	.	Ledus.S2G021600
Ledus.S2	AUGUSTUS	transcript	1793490	1795873	.	+	.	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	start_codon	1793490	1793492	.	+	0	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	CDS	1793490	1794389	0.97	+	0	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	exon	1793490	1794389	.	+	.	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	intron	1794390	1794489	.	+	.	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	CDS	1794490	1795260	1	+	0	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	exon	1794490	1795260	.	+	.	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	intron	1795261	1795349	.	+	.	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	CDS	1795350	1795381	0.62	+	0	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	exon	1795350	1795381	.	+	.	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	intron	1795382	1795482	.	+	.	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	CDS	1795483	1795873	0.62	+	1	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	exon	1795483	1795873	.	+	.	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
Ledus.S2	AUGUSTUS	stop_codon	1795874	1795876	.	+	0	transcript_id "Ledus.S2G021600.t1"; gene_id "Ledus.S2G021600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2449.t1 is derived from g9312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18165951	18166460	.	+	.	Ledus.S2G233100
Ledus.S2	AUGUSTUS	transcript	18165951	18166460	.	+	.	transcript_id "Ledus.S2G233100.t1"; gene_id "Ledus.S2G233100"
Ledus.S2	AUGUSTUS	start_codon	18165951	18165953	.	+	0	transcript_id "Ledus.S2G233100.t1"; gene_id "Ledus.S2G233100"
Ledus.S2	AUGUSTUS	CDS	18165951	18166084	0.58	+	0	transcript_id "Ledus.S2G233100.t1"; gene_id "Ledus.S2G233100"
Ledus.S2	AUGUSTUS	exon	18165951	18166084	.	+	.	transcript_id "Ledus.S2G233100.t1"; gene_id "Ledus.S2G233100"
Ledus.S2	AUGUSTUS	intron	18166085	18166249	.	+	.	transcript_id "Ledus.S2G233100.t1"; gene_id "Ledus.S2G233100"
Ledus.S2	AUGUSTUS	CDS	18166250	18166460	0.69	+	1	transcript_id "Ledus.S2G233100.t1"; gene_id "Ledus.S2G233100"
Ledus.S2	AUGUSTUS	exon	18166250	18166460	.	+	.	transcript_id "Ledus.S2G233100.t1"; gene_id "Ledus.S2G233100"
Ledus.S2	AUGUSTUS	stop_codon	18166461	18166463	.	+	0	transcript_id "Ledus.S2G233100.t1"; gene_id "Ledus.S2G233100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8766.t1 is derived from g9796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1884840	1888172	.	+	.	Ledus.S3G024300
Ledus.S3	AUGUSTUS	transcript	1884840	1888172	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	start_codon	1884840	1884842	.	+	0	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1884840	1884923	1	+	0	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1884840	1884923	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1884924	1885096	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1885097	1885144	1	+	0	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1885097	1885144	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1885145	1885283	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1885284	1885371	1	+	0	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1885284	1885371	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1885372	1885449	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1885450	1885493	1	+	2	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1885450	1885493	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1885494	1885591	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1885592	1885671	0.99	+	0	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1885592	1885671	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1885672	1886013	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1886014	1886065	0.94	+	1	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1886014	1886065	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1886066	1886387	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1886388	1886411	1	+	0	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1886388	1886411	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1886412	1886510	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1886511	1886601	1	+	0	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1886511	1886601	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1886602	1886864	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1886865	1887121	1	+	2	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1886865	1887121	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1887122	1887207	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1887208	1887419	1	+	0	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1887208	1887419	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1887420	1887504	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1887505	1887781	0.94	+	1	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1887505	1887781	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1887782	1887860	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1887861	1888172	1	+	0	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1887861	1888172	.	+	.	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	stop_codon	1888173	1888175	.	+	0	transcript_id "Ledus.S3G024300.t1"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	transcript	1884840	1888172	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	start_codon	1884840	1884842	.	+	0	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1884840	1884923	1	+	0	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1884840	1884923	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1884924	1885096	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1885097	1885144	1	+	0	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1885097	1885144	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1885145	1885283	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1885284	1885371	1	+	0	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1885284	1885371	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1885372	1885449	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1885450	1885493	1	+	2	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1885450	1885493	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1885494	1885591	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1885592	1885671	0.98	+	0	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1885592	1885671	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1885672	1886013	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1886014	1886065	0.94	+	1	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1886014	1886065	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1886066	1886387	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1886388	1886411	0.97	+	0	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1886388	1886411	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1886412	1886486	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1886487	1886601	0.99	+	0	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1886487	1886601	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1886602	1886864	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1886865	1887121	1	+	2	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1886865	1887121	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1887122	1887207	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1887208	1887419	1	+	0	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1887208	1887419	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1887420	1887504	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1887505	1887781	0.96	+	1	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1887505	1887781	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	intron	1887782	1887860	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	CDS	1887861	1888172	1	+	0	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	exon	1887861	1888172	.	+	.	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
Ledus.S3	AUGUSTUS	stop_codon	1888173	1888175	.	+	0	transcript_id "Ledus.S3G024300.t2"; gene_id "Ledus.S3G024300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8967.t1 is derived from g9997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3572255	3573463	.	+	.	Ledus.S3G044400
Ledus.S3	AUGUSTUS	transcript	3572255	3573463	.	+	.	transcript_id "Ledus.S3G044400.t1"; gene_id "Ledus.S3G044400"
Ledus.S3	AUGUSTUS	start_codon	3572255	3572257	.	+	0	transcript_id "Ledus.S3G044400.t1"; gene_id "Ledus.S3G044400"
Ledus.S3	AUGUSTUS	CDS	3572255	3573463	0.52	+	0	transcript_id "Ledus.S3G044400.t1"; gene_id "Ledus.S3G044400"
Ledus.S3	AUGUSTUS	exon	3572255	3573463	.	+	.	transcript_id "Ledus.S3G044400.t1"; gene_id "Ledus.S3G044400"
Ledus.S3	AUGUSTUS	stop_codon	3573464	3573466	.	+	0	transcript_id "Ledus.S3G044400.t1"; gene_id "Ledus.S3G044400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1031.t1 is derived from g7892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6876883	6879519	.	+	.	Ledus.S2G091300
Ledus.S2	AUGUSTUS	transcript	6878038	6879519	.	+	.	transcript_id "Ledus.S2G091300.t1"; gene_id "Ledus.S2G091300"
Ledus.S2	AUGUSTUS	start_codon	6878038	6878040	.	+	0	transcript_id "Ledus.S2G091300.t1"; gene_id "Ledus.S2G091300"
Ledus.S2	AUGUSTUS	CDS	6878038	6879519	0.67	+	0	transcript_id "Ledus.S2G091300.t1"; gene_id "Ledus.S2G091300"
Ledus.S2	AUGUSTUS	exon	6878038	6879519	.	+	.	transcript_id "Ledus.S2G091300.t1"; gene_id "Ledus.S2G091300"
Ledus.S2	AUGUSTUS	stop_codon	6879520	6879522	.	+	0	transcript_id "Ledus.S2G091300.t1"; gene_id "Ledus.S2G091300"
Ledus.S2	AUGUSTUS	transcript	6876883	6879519	.	+	.	transcript_id "Ledus.S2G091300.t2"; gene_id "Ledus.S2G091300"
Ledus.S2	AUGUSTUS	start_codon	6876883	6876885	.	+	0	transcript_id "Ledus.S2G091300.t2"; gene_id "Ledus.S2G091300"
Ledus.S2	AUGUSTUS	CDS	6876883	6879519	0.41	+	0	transcript_id "Ledus.S2G091300.t2"; gene_id "Ledus.S2G091300"
Ledus.S2	AUGUSTUS	exon	6876883	6879519	.	+	.	transcript_id "Ledus.S2G091300.t2"; gene_id "Ledus.S2G091300"
Ledus.S2	AUGUSTUS	stop_codon	6879520	6879522	.	+	0	transcript_id "Ledus.S2G091300.t2"; gene_id "Ledus.S2G091300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9067.t1 is derived from g10097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4322242	4322712	.	-	.	Ledus.S3G054400
Ledus.S3	AUGUSTUS	transcript	4322242	4322712	.	-	.	transcript_id "Ledus.S3G054400.t1"; gene_id "Ledus.S3G054400"
Ledus.S3	AUGUSTUS	stop_codon	4322239	4322241	.	-	0	transcript_id "Ledus.S3G054400.t1"; gene_id "Ledus.S3G054400"
Ledus.S3	AUGUSTUS	CDS	4322242	4322712	0.83	-	0	transcript_id "Ledus.S3G054400.t1"; gene_id "Ledus.S3G054400"
Ledus.S3	AUGUSTUS	exon	4322242	4322712	.	-	.	transcript_id "Ledus.S3G054400.t1"; gene_id "Ledus.S3G054400"
Ledus.S3	AUGUSTUS	start_codon	4322710	4322712	.	-	0	transcript_id "Ledus.S3G054400.t1"; gene_id "Ledus.S3G054400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11852.t1 is derived from g5471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7305449	7306882	.	-	.	Ledus.S4G100800
Ledus.S4	AUGUSTUS	transcript	7305449	7306882	.	-	.	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	stop_codon	7305446	7305448	.	-	0	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	CDS	7305449	7305481	1	-	0	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	exon	7305449	7305481	.	-	.	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	intron	7305482	7305570	.	-	.	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	CDS	7305571	7305771	1	-	0	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	exon	7305571	7305771	.	-	.	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	intron	7305772	7305857	.	-	.	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	CDS	7305858	7306573	1	-	2	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	exon	7305858	7306573	.	-	.	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	intron	7306574	7306656	.	-	.	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	CDS	7306657	7306882	0.99	-	0	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	exon	7306657	7306882	.	-	.	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
Ledus.S4	AUGUSTUS	start_codon	7306880	7306882	.	-	0	transcript_id "Ledus.S4G100800.t1"; gene_id "Ledus.S4G100800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2532.t1 is derived from g9395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18656536	18659718	.	-	.	Ledus.S2G241400
Ledus.S2	AUGUSTUS	transcript	18656536	18659718	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	stop_codon	18656533	18656535	.	-	0	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	CDS	18656536	18656619	1	-	0	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	exon	18656536	18656619	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	intron	18656620	18656746	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	CDS	18656747	18657025	1	-	0	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	exon	18656747	18657025	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	intron	18657026	18657187	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	CDS	18657188	18657348	1	-	2	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	exon	18657188	18657348	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	intron	18657349	18657511	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	CDS	18657512	18657534	1	-	1	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	exon	18657512	18657534	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	intron	18657535	18657621	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	CDS	18657622	18657746	1	-	0	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	exon	18657622	18657746	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	intron	18657747	18657840	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	CDS	18657841	18657921	1	-	0	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	exon	18657841	18657921	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	intron	18657922	18658016	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	CDS	18658017	18658112	1	-	0	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	exon	18658017	18658112	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	intron	18658113	18658567	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	CDS	18658568	18659290	0.6	-	0	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	exon	18658568	18659290	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	intron	18659291	18659394	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	CDS	18659395	18659718	0.97	-	0	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	exon	18659395	18659718	.	-	.	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
Ledus.S2	AUGUSTUS	start_codon	18659716	18659718	.	-	0	transcript_id "Ledus.S2G241400.t1"; gene_id "Ledus.S2G241400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3596.t1 is derived from g1032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9925536	9927526	.	-	.	Ledus.S1G101700
Ledus.S1	AUGUSTUS	transcript	9925536	9927526	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	stop_codon	9925533	9925535	.	-	0	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	CDS	9925536	9925619	0.64	-	0	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	exon	9925536	9925619	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	intron	9925620	9925725	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	CDS	9925726	9925771	1	-	1	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	exon	9925726	9925771	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	intron	9925772	9925941	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	CDS	9925942	9926162	1	-	0	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	exon	9925942	9926162	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	intron	9926163	9926305	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	CDS	9926306	9926485	1	-	0	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	exon	9926306	9926485	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	intron	9926486	9926603	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	CDS	9926604	9926828	1	-	0	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	exon	9926604	9926828	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	intron	9926829	9926910	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	CDS	9926911	9927033	1	-	0	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	exon	9926911	9927033	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	intron	9927034	9927188	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	CDS	9927189	9927279	1	-	1	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	exon	9927189	9927279	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	intron	9927280	9927443	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	CDS	9927444	9927526	0.4	-	0	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	exon	9927444	9927526	.	-	.	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
Ledus.S1	AUGUSTUS	start_codon	9927524	9927526	.	-	0	transcript_id "Ledus.S1G101700.t1"; gene_id "Ledus.S1G101700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3408.t1 is derived from g843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8117217	8119520	.	+	.	Ledus.S1G082900
Ledus.S1	AUGUSTUS	transcript	8117217	8119520	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	start_codon	8117217	8117219	.	+	0	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	CDS	8117217	8117342	0.98	+	0	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	exon	8117217	8117342	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	intron	8117343	8117464	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	CDS	8117465	8117527	0.99	+	0	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	exon	8117465	8117527	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	intron	8117528	8117613	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	CDS	8117614	8117748	1	+	0	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	exon	8117614	8117748	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	intron	8117749	8117902	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	CDS	8117903	8118005	1	+	0	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	exon	8117903	8118005	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	intron	8118006	8118105	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	CDS	8118106	8118176	1	+	2	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	exon	8118106	8118176	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	intron	8118177	8118358	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	CDS	8118359	8118463	1	+	0	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	exon	8118359	8118463	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	intron	8118464	8118626	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	CDS	8118627	8118660	1	+	0	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	exon	8118627	8118660	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	intron	8118661	8118746	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	CDS	8118747	8118847	1	+	2	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	exon	8118747	8118847	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	intron	8118848	8118958	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	CDS	8118959	8119018	1	+	0	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	exon	8118959	8119018	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	intron	8119019	8119098	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	CDS	8119099	8119305	1	+	0	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	exon	8119099	8119305	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	intron	8119306	8119400	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	CDS	8119401	8119520	1	+	0	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	exon	8119401	8119520	.	+	.	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
Ledus.S1	AUGUSTUS	stop_codon	8119521	8119523	.	+	0	transcript_id "Ledus.S1G082900.t1"; gene_id "Ledus.S1G082900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3987.t1 is derived from g1423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13919448	13922565	.	+	.	Ledus.S1G140800
Ledus.S1	AUGUSTUS	transcript	13919448	13922565	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	start_codon	13919448	13919450	.	+	0	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	CDS	13919448	13919778	0.76	+	0	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	exon	13919448	13919778	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	intron	13919779	13919876	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	CDS	13919877	13919953	1	+	2	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	exon	13919877	13919953	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	intron	13919954	13920153	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	CDS	13920154	13920237	1	+	0	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	exon	13920154	13920237	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	intron	13920238	13920329	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	CDS	13920330	13920623	0.84	+	0	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	exon	13920330	13920623	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	intron	13920624	13920726	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	CDS	13920727	13920866	0.84	+	0	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	exon	13920727	13920866	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	intron	13920867	13920977	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	CDS	13920978	13921065	1	+	1	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	exon	13920978	13921065	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	intron	13921066	13921257	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	CDS	13921258	13921440	1	+	0	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	exon	13921258	13921440	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	intron	13921441	13921563	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	CDS	13921564	13921725	1	+	0	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	exon	13921564	13921725	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	intron	13921726	13921800	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	CDS	13921801	13921994	1	+	0	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	exon	13921801	13921994	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	intron	13921995	13922126	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	CDS	13922127	13922277	1	+	1	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	exon	13922127	13922277	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	intron	13922278	13922370	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	CDS	13922371	13922565	0.93	+	0	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	exon	13922371	13922565	.	+	.	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
Ledus.S1	AUGUSTUS	stop_codon	13922566	13922568	.	+	0	transcript_id "Ledus.S1G140800.t1"; gene_id "Ledus.S1G140800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4122.t1 is derived from g1558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14791589	14794757	.	-	.	Ledus.S1G154300
Ledus.S1	AUGUSTUS	transcript	14791589	14794757	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	stop_codon	14791586	14791588	.	-	0	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14791589	14791818	0.11	-	2	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14791589	14791818	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14791819	14791947	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14791948	14792056	0.9	-	0	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14791948	14792056	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14792057	14792136	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14792137	14792268	0.94	-	0	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14792137	14792268	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14792269	14792401	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14792402	14792526	0.7	-	2	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14792402	14792526	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14792527	14792667	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14792668	14792758	0.77	-	0	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14792668	14792758	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14792759	14792841	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14792842	14792915	0.71	-	2	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14792842	14792915	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14792916	14793009	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14793010	14793079	0.91	-	0	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14793010	14793079	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14793080	14793303	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14793304	14793379	0.85	-	1	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14793304	14793379	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14793380	14793467	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14793468	14793557	1	-	1	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14793468	14793557	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14793558	14793643	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14793644	14793748	1	-	1	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14793644	14793748	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14793749	14793845	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14793846	14793949	0.4	-	0	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14793846	14793949	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14793950	14794034	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14794035	14794102	0.75	-	2	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14794035	14794102	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14794103	14794227	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14794228	14794334	0.99	-	1	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14794228	14794334	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14794335	14794484	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14794485	14794548	1	-	2	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14794485	14794548	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	intron	14794549	14794639	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	CDS	14794640	14794757	0.92	-	0	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	exon	14794640	14794757	.	-	.	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
Ledus.S1	AUGUSTUS	start_codon	14794755	14794757	.	-	0	transcript_id "Ledus.S1G154300.t1"; gene_id "Ledus.S1G154300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg28.t1 is derived from g6457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C17	AUGUSTUS	gene	74456	74665	.	-	.	Ledus.C17G000600
Ledus.C17	AUGUSTUS	transcript	74456	74665	.	-	.	transcript_id "Ledus.C17G000600.t1"; gene_id "Ledus.C17G000600"
Ledus.C17	AUGUSTUS	stop_codon	74453	74455	.	-	0	transcript_id "Ledus.C17G000600.t1"; gene_id "Ledus.C17G000600"
Ledus.C17	AUGUSTUS	CDS	74456	74665	0.99	-	0	transcript_id "Ledus.C17G000600.t1"; gene_id "Ledus.C17G000600"
Ledus.C17	AUGUSTUS	exon	74456	74665	.	-	.	transcript_id "Ledus.C17G000600.t1"; gene_id "Ledus.C17G000600"
Ledus.C17	AUGUSTUS	start_codon	74663	74665	.	-	0	transcript_id "Ledus.C17G000600.t1"; gene_id "Ledus.C17G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg514.t1 is derived from g7375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3006787	3009039	.	-	.	Ledus.S2G039600
Ledus.S2	AUGUSTUS	transcript	3006787	3009039	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	stop_codon	3006784	3006786	.	-	0	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	CDS	3006787	3006970	1	-	1	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	exon	3006787	3006970	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	intron	3006971	3007059	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	CDS	3007060	3007181	1	-	0	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	exon	3007060	3007181	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	intron	3007182	3007261	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	CDS	3007262	3007482	1	-	2	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	exon	3007262	3007482	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	intron	3007483	3007564	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	CDS	3007565	3007703	1	-	0	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	exon	3007565	3007703	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	intron	3007704	3007793	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	CDS	3007794	3008017	1	-	2	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	exon	3007794	3008017	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	intron	3008018	3008103	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	CDS	3008104	3008215	1	-	0	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	exon	3008104	3008215	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	intron	3008216	3008314	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	CDS	3008315	3008694	1	-	2	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	exon	3008315	3008694	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	intron	3008695	3009005	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	CDS	3009006	3009039	0.89	-	0	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	exon	3009006	3009039	.	-	.	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
Ledus.S2	AUGUSTUS	start_codon	3009037	3009039	.	-	0	transcript_id "Ledus.S2G039600.t1"; gene_id "Ledus.S2G039600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11435.t1 is derived from g5053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4281885	4283667	.	+	.	Ledus.S4G059100
Ledus.S4	AUGUSTUS	transcript	4281885	4283667	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	start_codon	4281885	4281887	.	+	0	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	CDS	4281885	4282247	0.99	+	0	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	exon	4281885	4282247	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	intron	4282248	4282355	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	CDS	4282356	4282393	1	+	0	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	exon	4282356	4282393	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	intron	4282394	4282494	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	CDS	4282495	4282523	0.74	+	1	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	exon	4282495	4282523	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	intron	4282524	4282576	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	CDS	4282577	4282619	0.71	+	2	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	exon	4282577	4282619	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	intron	4282620	4282716	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	CDS	4282717	4282771	0.74	+	1	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	exon	4282717	4282771	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	intron	4282772	4282853	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	CDS	4282854	4283137	0.92	+	0	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	exon	4282854	4283137	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	intron	4283138	4283216	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	CDS	4283217	4283667	1	+	1	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	exon	4283217	4283667	.	+	.	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
Ledus.S4	AUGUSTUS	stop_codon	4283668	4283670	.	+	0	transcript_id "Ledus.S4G059100.t1"; gene_id "Ledus.S4G059100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg946.t1 is derived from g7807.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6252766	6256010	.	+	.	Ledus.S2G082800
Ledus.S2	AUGUSTUS	transcript	6252766	6256010	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	start_codon	6252766	6252768	.	+	0	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	CDS	6252766	6253020	0.82	+	0	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	exon	6252766	6253020	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	intron	6253021	6253191	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	CDS	6253192	6253379	1	+	0	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	exon	6253192	6253379	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	intron	6253380	6253496	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	CDS	6253497	6254581	1	+	1	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	exon	6253497	6254581	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	intron	6254582	6255049	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	CDS	6255050	6255175	1	+	2	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	exon	6255050	6255175	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	intron	6255176	6255277	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	CDS	6255278	6255516	1	+	2	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	exon	6255278	6255516	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	intron	6255517	6255639	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	CDS	6255640	6255758	1	+	0	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	exon	6255640	6255758	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	intron	6255759	6255886	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	CDS	6255887	6256010	1	+	1	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	exon	6255887	6256010	.	+	.	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
Ledus.S2	AUGUSTUS	stop_codon	6256011	6256013	.	+	0	transcript_id "Ledus.S2G082800.t1"; gene_id "Ledus.S2G082800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11261.t1 is derived from g4879.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3019766	3021216	.	+	.	Ledus.S4G041700
Ledus.S4	AUGUSTUS	transcript	3019766	3021216	.	+	.	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	start_codon	3019766	3019768	.	+	0	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	CDS	3019766	3019898	0.56	+	0	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	exon	3019766	3019898	.	+	.	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	intron	3019899	3019980	.	+	.	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	CDS	3019981	3020142	0.59	+	2	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	exon	3019981	3020142	.	+	.	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	intron	3020143	3020565	.	+	.	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	CDS	3020566	3020636	0.76	+	2	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	exon	3020566	3020636	.	+	.	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	intron	3020637	3020928	.	+	.	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	CDS	3020929	3021216	0.74	+	0	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	exon	3020929	3021216	.	+	.	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
Ledus.S4	AUGUSTUS	stop_codon	3021217	3021219	.	+	0	transcript_id "Ledus.S4G041700.t1"; gene_id "Ledus.S4G041700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2520.t1 is derived from g9383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18569907	18572393	.	+	.	Ledus.S2G240200
Ledus.S2	AUGUSTUS	transcript	18569907	18572393	.	+	.	transcript_id "Ledus.S2G240200.t1"; gene_id "Ledus.S2G240200"
Ledus.S2	AUGUSTUS	start_codon	18569907	18569909	.	+	0	transcript_id "Ledus.S2G240200.t1"; gene_id "Ledus.S2G240200"
Ledus.S2	AUGUSTUS	CDS	18569907	18572393	1	+	0	transcript_id "Ledus.S2G240200.t1"; gene_id "Ledus.S2G240200"
Ledus.S2	AUGUSTUS	exon	18569907	18572393	.	+	.	transcript_id "Ledus.S2G240200.t1"; gene_id "Ledus.S2G240200"
Ledus.S2	AUGUSTUS	stop_codon	18572394	18572396	.	+	0	transcript_id "Ledus.S2G240200.t1"; gene_id "Ledus.S2G240200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9321.t1 is derived from g10351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6076772	6082035	.	-	.	Ledus.S3G079800
Ledus.S3	AUGUSTUS	transcript	6076772	6082035	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	stop_codon	6076769	6076771	.	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6076772	6076912	0.99	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6076772	6076912	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6076913	6077040	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6077041	6077247	1	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6077041	6077247	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6077248	6077344	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6077345	6077461	0.93	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6077345	6077461	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6077462	6077564	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6077565	6077720	0.98	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6077565	6077720	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6077721	6077906	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6077907	6078056	1	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6077907	6078056	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6078057	6078227	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6078228	6078337	1	-	2	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6078228	6078337	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6078338	6078550	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6078551	6078695	0.99	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6078551	6078695	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6078696	6078804	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6078805	6079059	0.98	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6078805	6079059	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6079060	6079175	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6079176	6079409	0.99	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6079176	6079409	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6079410	6079531	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6079532	6079861	1	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6079532	6079861	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6079862	6079988	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6079989	6080029	1	-	2	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6079989	6080029	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6080030	6080150	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6080151	6080259	0.97	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6080151	6080259	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6080260	6080345	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6080346	6080398	0.51	-	2	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6080346	6080398	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6080399	6080489	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6080490	6080589	0.31	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6080490	6080589	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6080590	6080721	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6080722	6080889	0.65	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6080722	6080889	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6080890	6081150	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6081151	6081246	0.7	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6081151	6081246	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6081247	6081326	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6081327	6081436	0.87	-	2	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6081327	6081436	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6081437	6081537	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6081538	6081635	0.94	-	1	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6081538	6081635	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6081636	6082003	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6082004	6082035	0.94	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6082004	6082035	.	-	.	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	start_codon	6082033	6082035	.	-	0	transcript_id "Ledus.S3G079800.t1"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	transcript	6076772	6082035	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	stop_codon	6076769	6076771	.	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6076772	6076912	1	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6076772	6076912	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6076913	6077040	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6077041	6077247	1	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6077041	6077247	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6077248	6077344	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6077345	6077461	0.91	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6077345	6077461	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6077462	6077564	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6077565	6077723	0.99	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6077565	6077723	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6077724	6077906	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6077907	6078056	1	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6077907	6078056	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6078057	6078227	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6078228	6078337	1	-	2	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6078228	6078337	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6078338	6078550	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6078551	6078695	1	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6078551	6078695	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6078696	6078804	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6078805	6079059	1	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6078805	6079059	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6079060	6079175	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6079176	6079409	0.99	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6079176	6079409	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6079410	6079531	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6079532	6079861	1	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6079532	6079861	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6079862	6079988	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6079989	6080029	1	-	2	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6079989	6080029	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6080030	6080150	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6080151	6080259	0.99	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6080151	6080259	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6080260	6080345	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6080346	6080398	0.54	-	2	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6080346	6080398	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6080399	6080489	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6080490	6080589	0.35	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6080490	6080589	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6080590	6080721	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6080722	6080889	0.59	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6080722	6080889	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6080890	6081150	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6081151	6081246	0.65	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6081151	6081246	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6081247	6081326	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6081327	6081436	0.85	-	2	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6081327	6081436	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6081437	6081537	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6081538	6081635	0.96	-	1	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6081538	6081635	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	intron	6081636	6082003	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	CDS	6082004	6082035	0.91	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	exon	6082004	6082035	.	-	.	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
Ledus.S3	AUGUSTUS	start_codon	6082033	6082035	.	-	0	transcript_id "Ledus.S3G079800.t2"; gene_id "Ledus.S3G079800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9068.t1 is derived from g10098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4339339	4346166	.	-	.	Ledus.S3G054500
Ledus.S3	AUGUSTUS	transcript	4339339	4346166	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	stop_codon	4339336	4339338	.	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4339339	4340011	1	-	1	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4339339	4340011	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4340012	4340119	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4340120	4340227	1	-	1	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4340120	4340227	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4340228	4340316	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4340317	4340765	1	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4340317	4340765	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4340766	4340859	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4340860	4341438	1	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4340860	4341438	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4341439	4341603	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4341604	4341685	1	-	1	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4341604	4341685	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4341686	4341771	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4341772	4341950	1	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4341772	4341950	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4341951	4342064	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4342065	4342259	1	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4342065	4342259	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4342260	4342371	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4342372	4342502	1	-	2	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4342372	4342502	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4342503	4342584	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4342585	4342777	1	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4342585	4342777	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4342778	4342853	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4342854	4342988	1	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4342854	4342988	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4342989	4343113	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4343114	4343420	1	-	1	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4343114	4343420	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4343421	4343512	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4343513	4343672	1	-	2	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4343513	4343672	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4343673	4343747	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4343748	4343900	1	-	2	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4343748	4343900	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4343901	4344055	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4344056	4344182	0.68	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4344056	4344182	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4344183	4344544	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4344545	4344673	0.72	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4344545	4344673	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4344674	4344765	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4344766	4344885	1	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4344766	4344885	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4344886	4345045	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4345046	4345108	1	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4345046	4345108	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4345109	4345295	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4345296	4345416	1	-	1	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4345296	4345416	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4345417	4345520	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4345521	4345662	1	-	2	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4345521	4345662	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4345663	4345792	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4345793	4345936	0.97	-	2	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4345793	4345936	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	intron	4345937	4346120	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	CDS	4346121	4346166	0.77	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	exon	4346121	4346166	.	-	.	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
Ledus.S3	AUGUSTUS	start_codon	4346164	4346166	.	-	0	transcript_id "Ledus.S3G054500.t1"; gene_id "Ledus.S3G054500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12863.t1 is derived from g4436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	68953	70908	.	-	.	Ledus.C10G000600
Ledus.C10	AUGUSTUS	transcript	68953	70908	.	-	.	transcript_id "Ledus.C10G000600.t1"; gene_id "Ledus.C10G000600"
Ledus.C10	AUGUSTUS	stop_codon	68950	68952	.	-	0	transcript_id "Ledus.C10G000600.t1"; gene_id "Ledus.C10G000600"
Ledus.C10	AUGUSTUS	CDS	68953	70908	0.77	-	0	transcript_id "Ledus.C10G000600.t1"; gene_id "Ledus.C10G000600"
Ledus.C10	AUGUSTUS	exon	68953	70908	.	-	.	transcript_id "Ledus.C10G000600.t1"; gene_id "Ledus.C10G000600"
Ledus.C10	AUGUSTUS	start_codon	70906	70908	.	-	0	transcript_id "Ledus.C10G000600.t1"; gene_id "Ledus.C10G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7918.t1 is derived from g12589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7837358	7838185	.	-	.	Ledus.S5G069600
Ledus.S5	AUGUSTUS	transcript	7837358	7838185	.	-	.	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	stop_codon	7837355	7837357	.	-	0	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	CDS	7837358	7837358	1	-	1	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	exon	7837358	7837358	.	-	.	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	intron	7837359	7837521	.	-	.	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	CDS	7837522	7837577	1	-	0	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	exon	7837522	7837577	.	-	.	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	intron	7837578	7837668	.	-	.	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	CDS	7837669	7837722	1	-	0	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	exon	7837669	7837722	.	-	.	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	intron	7837723	7837799	.	-	.	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	CDS	7837800	7837869	1	-	1	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	exon	7837800	7837869	.	-	.	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	intron	7837870	7837964	.	-	.	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	CDS	7837965	7838185	0.99	-	0	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	exon	7837965	7838185	.	-	.	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
Ledus.S5	AUGUSTUS	start_codon	7838183	7838185	.	-	0	transcript_id "Ledus.S5G069600.t1"; gene_id "Ledus.S5G069600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2837.t1 is derived from g271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4100263	4101314	.	+	.	Ledus.S1G025800
Ledus.S1	AUGUSTUS	transcript	4100263	4101314	.	+	.	transcript_id "Ledus.S1G025800.t1"; gene_id "Ledus.S1G025800"
Ledus.S1	AUGUSTUS	start_codon	4100263	4100265	.	+	0	transcript_id "Ledus.S1G025800.t1"; gene_id "Ledus.S1G025800"
Ledus.S1	AUGUSTUS	CDS	4100263	4100582	0.59	+	0	transcript_id "Ledus.S1G025800.t1"; gene_id "Ledus.S1G025800"
Ledus.S1	AUGUSTUS	exon	4100263	4100582	.	+	.	transcript_id "Ledus.S1G025800.t1"; gene_id "Ledus.S1G025800"
Ledus.S1	AUGUSTUS	intron	4100583	4100812	.	+	.	transcript_id "Ledus.S1G025800.t1"; gene_id "Ledus.S1G025800"
Ledus.S1	AUGUSTUS	CDS	4100813	4101314	0.43	+	1	transcript_id "Ledus.S1G025800.t1"; gene_id "Ledus.S1G025800"
Ledus.S1	AUGUSTUS	exon	4100813	4101314	.	+	.	transcript_id "Ledus.S1G025800.t1"; gene_id "Ledus.S1G025800"
Ledus.S1	AUGUSTUS	stop_codon	4101315	4101317	.	+	0	transcript_id "Ledus.S1G025800.t1"; gene_id "Ledus.S1G025800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1245.t1 is derived from g8106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8853571	8855536	.	-	.	Ledus.S2G112700
Ledus.S2	AUGUSTUS	transcript	8853571	8855536	.	-	.	transcript_id "Ledus.S2G112700.t1"; gene_id "Ledus.S2G112700"
Ledus.S2	AUGUSTUS	stop_codon	8853568	8853570	.	-	0	transcript_id "Ledus.S2G112700.t1"; gene_id "Ledus.S2G112700"
Ledus.S2	AUGUSTUS	CDS	8853571	8853590	1	-	2	transcript_id "Ledus.S2G112700.t1"; gene_id "Ledus.S2G112700"
Ledus.S2	AUGUSTUS	exon	8853571	8853590	.	-	.	transcript_id "Ledus.S2G112700.t1"; gene_id "Ledus.S2G112700"
Ledus.S2	AUGUSTUS	intron	8853591	8853681	.	-	.	transcript_id "Ledus.S2G112700.t1"; gene_id "Ledus.S2G112700"
Ledus.S2	AUGUSTUS	CDS	8853682	8855536	0.64	-	0	transcript_id "Ledus.S2G112700.t1"; gene_id "Ledus.S2G112700"
Ledus.S2	AUGUSTUS	exon	8853682	8855536	.	-	.	transcript_id "Ledus.S2G112700.t1"; gene_id "Ledus.S2G112700"
Ledus.S2	AUGUSTUS	start_codon	8855534	8855536	.	-	0	transcript_id "Ledus.S2G112700.t1"; gene_id "Ledus.S2G112700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12350.t1 is derived from g5971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11356616	11357425	.	-	.	Ledus.S4G150600
Ledus.S4	AUGUSTUS	transcript	11356616	11357425	.	-	.	transcript_id "Ledus.S4G150600.t1"; gene_id "Ledus.S4G150600"
Ledus.S4	AUGUSTUS	stop_codon	11356613	11356615	.	-	0	transcript_id "Ledus.S4G150600.t1"; gene_id "Ledus.S4G150600"
Ledus.S4	AUGUSTUS	CDS	11356616	11356786	1	-	0	transcript_id "Ledus.S4G150600.t1"; gene_id "Ledus.S4G150600"
Ledus.S4	AUGUSTUS	exon	11356616	11356786	.	-	.	transcript_id "Ledus.S4G150600.t1"; gene_id "Ledus.S4G150600"
Ledus.S4	AUGUSTUS	intron	11356787	11356864	.	-	.	transcript_id "Ledus.S4G150600.t1"; gene_id "Ledus.S4G150600"
Ledus.S4	AUGUSTUS	CDS	11356865	11357003	1	-	1	transcript_id "Ledus.S4G150600.t1"; gene_id "Ledus.S4G150600"
Ledus.S4	AUGUSTUS	exon	11356865	11357003	.	-	.	transcript_id "Ledus.S4G150600.t1"; gene_id "Ledus.S4G150600"
Ledus.S4	AUGUSTUS	intron	11357004	11357255	.	-	.	transcript_id "Ledus.S4G150600.t1"; gene_id "Ledus.S4G150600"
Ledus.S4	AUGUSTUS	CDS	11357256	11357425	0.85	-	0	transcript_id "Ledus.S4G150600.t1"; gene_id "Ledus.S4G150600"
Ledus.S4	AUGUSTUS	exon	11357256	11357425	.	-	.	transcript_id "Ledus.S4G150600.t1"; gene_id "Ledus.S4G150600"
Ledus.S4	AUGUSTUS	start_codon	11357423	11357425	.	-	0	transcript_id "Ledus.S4G150600.t1"; gene_id "Ledus.S4G150600"
# This transcript jg1317.t2 is derived from g8178.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1318.t1 is derived from g8179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9240440	9242704	.	-	.	Ledus.S2G120000
Ledus.S2	AUGUSTUS	transcript	9240440	9242704	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	stop_codon	9240437	9240439	.	-	0	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	CDS	9240440	9240751	1	-	0	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	exon	9240440	9240751	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	intron	9240752	9240846	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	CDS	9240847	9241083	1	-	0	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	exon	9240847	9241083	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	intron	9241084	9241172	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	CDS	9241173	9241331	1	-	0	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	exon	9241173	9241331	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	intron	9241332	9241420	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	CDS	9241421	9241612	1	-	0	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	exon	9241421	9241612	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	intron	9241613	9241686	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	CDS	9241687	9241974	0.89	-	0	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	exon	9241687	9241974	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	intron	9241975	9242096	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	CDS	9242097	9242150	1	-	0	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	exon	9242097	9242150	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	intron	9242151	9242230	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	CDS	9242231	9242704	0.99	-	0	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	exon	9242231	9242704	.	-	.	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
Ledus.S2	AUGUSTUS	start_codon	9242702	9242704	.	-	0	transcript_id "Ledus.S2G120000.t1"; gene_id "Ledus.S2G120000"
# This transcript jg1251.t2 is derived from g8112.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1252.t1 is derived from g8113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8898791	8900305	.	-	.	Ledus.S2G113400
Ledus.S2	AUGUSTUS	transcript	8898791	8900305	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	stop_codon	8898788	8898790	.	-	0	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	CDS	8898791	8898940	0.79	-	0	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	exon	8898791	8898940	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	intron	8898941	8899043	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	CDS	8899044	8899129	0.87	-	2	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	exon	8899044	8899129	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	intron	8899130	8899209	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	CDS	8899210	8899406	0.89	-	1	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	exon	8899210	8899406	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	intron	8899407	8899492	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	CDS	8899493	8899628	0.79	-	2	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	exon	8899493	8899628	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	intron	8899629	8899724	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	CDS	8899725	8899881	0.79	-	0	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	exon	8899725	8899881	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	intron	8899882	8899973	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	CDS	8899974	8900088	0.45	-	1	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	exon	8899974	8900088	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	intron	8900089	8900177	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	CDS	8900178	8900305	0.35	-	0	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	exon	8900178	8900305	.	-	.	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
Ledus.S2	AUGUSTUS	start_codon	8900303	8900305	.	-	0	transcript_id "Ledus.S2G113400.t1"; gene_id "Ledus.S2G113400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10613.t1 is derived from g11643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16454777	16455413	.	+	.	Ledus.S3G209000
Ledus.S3	AUGUSTUS	transcript	16454777	16455413	.	+	.	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	start_codon	16454777	16454779	.	+	0	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	CDS	16454777	16454967	0.65	+	0	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	exon	16454777	16454967	.	+	.	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	intron	16454968	16455042	.	+	.	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	CDS	16455043	16455104	0.99	+	1	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	exon	16455043	16455104	.	+	.	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	intron	16455105	16455175	.	+	.	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	CDS	16455176	16455187	0.98	+	2	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	exon	16455176	16455187	.	+	.	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	intron	16455188	16455411	.	+	.	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	CDS	16455412	16455413	0.98	+	2	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	exon	16455412	16455413	.	+	.	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
Ledus.S3	AUGUSTUS	stop_codon	16455414	16455416	.	+	0	transcript_id "Ledus.S3G209000.t1"; gene_id "Ledus.S3G209000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12431.t1 is derived from g6052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11992018	11994889	.	-	.	Ledus.S4G158700
Ledus.S4	AUGUSTUS	transcript	11992018	11994889	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	stop_codon	11992015	11992017	.	-	0	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	CDS	11992018	11992044	0.92	-	0	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	exon	11992018	11992044	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	intron	11992045	11992128	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	CDS	11992129	11992150	0.91	-	1	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	exon	11992129	11992150	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	intron	11992151	11992277	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	CDS	11992278	11992318	0.92	-	0	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	exon	11992278	11992318	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	intron	11992319	11992403	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	CDS	11992404	11992727	1	-	0	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	exon	11992404	11992727	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	intron	11992728	11992856	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	CDS	11992857	11993363	0.99	-	0	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	exon	11992857	11993363	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	intron	11993364	11993444	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	CDS	11993445	11993525	1	-	0	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	exon	11993445	11993525	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	intron	11993526	11993696	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	CDS	11993697	11993844	1	-	1	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	exon	11993697	11993844	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	intron	11993845	11994055	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	CDS	11994056	11994159	0.99	-	0	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	exon	11994056	11994159	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	intron	11994160	11994261	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	CDS	11994262	11994351	0.96	-	0	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	exon	11994262	11994351	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	intron	11994352	11994433	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	CDS	11994434	11994500	1	-	1	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	exon	11994434	11994500	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	intron	11994501	11994637	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	CDS	11994638	11994703	1	-	1	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	exon	11994638	11994703	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	intron	11994704	11994878	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	CDS	11994879	11994889	0.72	-	0	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	exon	11994879	11994889	.	-	.	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
Ledus.S4	AUGUSTUS	start_codon	11994887	11994889	.	-	0	transcript_id "Ledus.S4G158700.t1"; gene_id "Ledus.S4G158700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4242.t1 is derived from g1678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15731277	15731852	.	-	.	Ledus.S1G166300
Ledus.S1	AUGUSTUS	transcript	15731277	15731852	.	-	.	transcript_id "Ledus.S1G166300.t1"; gene_id "Ledus.S1G166300"
Ledus.S1	AUGUSTUS	stop_codon	15731274	15731276	.	-	0	transcript_id "Ledus.S1G166300.t1"; gene_id "Ledus.S1G166300"
Ledus.S1	AUGUSTUS	CDS	15731277	15731852	0.36	-	0	transcript_id "Ledus.S1G166300.t1"; gene_id "Ledus.S1G166300"
Ledus.S1	AUGUSTUS	exon	15731277	15731852	.	-	.	transcript_id "Ledus.S1G166300.t1"; gene_id "Ledus.S1G166300"
Ledus.S1	AUGUSTUS	start_codon	15731850	15731852	.	-	0	transcript_id "Ledus.S1G166300.t1"; gene_id "Ledus.S1G166300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5267.t1 is derived from g2706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22793024	22794769	.	-	.	Ledus.S1G268800
Ledus.S1	AUGUSTUS	transcript	22793024	22794769	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	stop_codon	22793021	22793023	.	-	0	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	CDS	22793024	22793170	0.94	-	0	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	exon	22793024	22793170	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	intron	22793171	22793255	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	CDS	22793256	22793325	1	-	1	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	exon	22793256	22793325	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	intron	22793326	22793418	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	CDS	22793419	22793609	1	-	0	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	exon	22793419	22793609	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	intron	22793610	22793708	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	CDS	22793709	22793804	1	-	0	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	exon	22793709	22793804	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	intron	22793805	22793949	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	CDS	22793950	22794056	1	-	2	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	exon	22793950	22794056	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	intron	22794057	22794176	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	CDS	22794177	22794219	1	-	0	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	exon	22794177	22794219	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	intron	22794220	22794317	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	CDS	22794318	22794407	1	-	0	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	exon	22794318	22794407	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	intron	22794408	22794485	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	CDS	22794486	22794557	1	-	0	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	exon	22794486	22794557	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	intron	22794558	22794691	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	CDS	22794692	22794769	0.99	-	0	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	exon	22794692	22794769	.	-	.	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
Ledus.S1	AUGUSTUS	start_codon	22794767	22794769	.	-	0	transcript_id "Ledus.S1G268800.t1"; gene_id "Ledus.S1G268800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1905.t1 is derived from g8768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13279728	13281703	.	-	.	Ledus.S2G178700
Ledus.S2	AUGUSTUS	transcript	13279728	13281703	.	-	.	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	stop_codon	13279725	13279727	.	-	0	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	CDS	13279728	13280844	0.65	-	1	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	exon	13279728	13280844	.	-	.	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	intron	13280845	13280973	.	-	.	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	CDS	13280974	13281303	0.89	-	1	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	exon	13280974	13281303	.	-	.	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	intron	13281304	13281410	.	-	.	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	CDS	13281411	13281481	0.75	-	0	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	exon	13281411	13281481	.	-	.	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	intron	13281482	13281643	.	-	.	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	CDS	13281644	13281703	0.48	-	0	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	exon	13281644	13281703	.	-	.	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
Ledus.S2	AUGUSTUS	start_codon	13281701	13281703	.	-	0	transcript_id "Ledus.S2G178700.t1"; gene_id "Ledus.S2G178700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5468.t1 is derived from g2907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24453638	24456199	.	+	.	Ledus.S1G288900
Ledus.S1	AUGUSTUS	transcript	24453638	24456199	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	start_codon	24453638	24453640	.	+	0	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	CDS	24453638	24453683	0.99	+	0	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	exon	24453638	24453683	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	intron	24453684	24454193	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	CDS	24454194	24454322	1	+	2	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	exon	24454194	24454322	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	intron	24454323	24454437	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	CDS	24454438	24454477	1	+	2	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	exon	24454438	24454477	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	intron	24454478	24454861	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	CDS	24454862	24454937	1	+	1	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	exon	24454862	24454937	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	intron	24454938	24455075	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	CDS	24455076	24455276	1	+	0	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	exon	24455076	24455276	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	intron	24455277	24455436	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	CDS	24455437	24455649	1	+	0	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	exon	24455437	24455649	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	intron	24455650	24455766	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	CDS	24455767	24455856	0.54	+	0	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	exon	24455767	24455856	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	intron	24455857	24456133	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	CDS	24456134	24456199	0.54	+	0	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	exon	24456134	24456199	.	+	.	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
Ledus.S1	AUGUSTUS	stop_codon	24456200	24456202	.	+	0	transcript_id "Ledus.S1G288900.t1"; gene_id "Ledus.S1G288900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3494.t1 is derived from g929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8760485	8761418	.	-	.	Ledus.S1G091500
Ledus.S1	AUGUSTUS	transcript	8760485	8761418	.	-	.	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	stop_codon	8760482	8760484	.	-	0	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	CDS	8760485	8760508	0.52	-	0	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	exon	8760485	8760508	.	-	.	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	intron	8760509	8760638	.	-	.	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	CDS	8760639	8760869	0.39	-	0	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	exon	8760639	8760869	.	-	.	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	intron	8760870	8760977	.	-	.	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	CDS	8760978	8761199	1	-	0	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	exon	8760978	8761199	.	-	.	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	intron	8761200	8761307	.	-	.	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	CDS	8761308	8761418	0.44	-	0	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	exon	8761308	8761418	.	-	.	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
Ledus.S1	AUGUSTUS	start_codon	8761416	8761418	.	-	0	transcript_id "Ledus.S1G091500.t1"; gene_id "Ledus.S1G091500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9025.t1 is derived from g10055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3915843	3916274	.	-	.	Ledus.S3G050200
Ledus.S3	AUGUSTUS	transcript	3915843	3916274	.	-	.	transcript_id "Ledus.S3G050200.t1"; gene_id "Ledus.S3G050200"
Ledus.S3	AUGUSTUS	stop_codon	3915840	3915842	.	-	0	transcript_id "Ledus.S3G050200.t1"; gene_id "Ledus.S3G050200"
Ledus.S3	AUGUSTUS	CDS	3915843	3916274	0.78	-	0	transcript_id "Ledus.S3G050200.t1"; gene_id "Ledus.S3G050200"
Ledus.S3	AUGUSTUS	exon	3915843	3916274	.	-	.	transcript_id "Ledus.S3G050200.t1"; gene_id "Ledus.S3G050200"
Ledus.S3	AUGUSTUS	start_codon	3916272	3916274	.	-	0	transcript_id "Ledus.S3G050200.t1"; gene_id "Ledus.S3G050200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11543.t1 is derived from g5161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5200598	5205709	.	+	.	Ledus.S4G069900
Ledus.S4	AUGUSTUS	transcript	5200598	5205709	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	start_codon	5200598	5200600	.	+	0	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	CDS	5200598	5200660	1	+	0	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	exon	5200598	5200660	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	intron	5200661	5200748	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	CDS	5200749	5200829	1	+	0	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	exon	5200749	5200829	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	intron	5200830	5200919	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	CDS	5200920	5201000	1	+	0	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	exon	5200920	5201000	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	intron	5201001	5201093	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	CDS	5201094	5201279	1	+	0	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	exon	5201094	5201279	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	intron	5201280	5201413	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	CDS	5201414	5201512	1	+	0	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	exon	5201414	5201512	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	intron	5201513	5201630	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	CDS	5201631	5202650	0.67	+	0	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	exon	5201631	5202650	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	intron	5202651	5202866	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	CDS	5202867	5202952	0.93	+	0	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	exon	5202867	5202952	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	intron	5202953	5203134	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	CDS	5203135	5203352	1	+	1	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	exon	5203135	5203352	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	intron	5203353	5203565	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	CDS	5203566	5203726	1	+	2	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	exon	5203566	5203726	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	intron	5203727	5204116	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	CDS	5204117	5204194	1	+	0	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	exon	5204117	5204194	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	intron	5204195	5204338	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	CDS	5204339	5205709	0.32	+	0	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	exon	5204339	5205709	.	+	.	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
Ledus.S4	AUGUSTUS	stop_codon	5205710	5205712	.	+	0	transcript_id "Ledus.S4G069900.t1"; gene_id "Ledus.S4G069900"
# This transcript jg4176.t2 is derived from g1612.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4177.t1 is derived from g1613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15201763	15208248	.	+	.	Ledus.S1G159800
Ledus.S1	AUGUSTUS	transcript	15201763	15208248	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	start_codon	15201763	15201765	.	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15201763	15201780	0.81	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15201763	15201780	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15201781	15201946	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15201947	15202019	0.89	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15201947	15202019	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15202020	15202181	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15202182	15202236	0.99	+	2	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15202182	15202236	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15202237	15202423	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15202424	15202529	1	+	1	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15202424	15202529	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15202530	15202665	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15202666	15202864	1	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15202666	15202864	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15202865	15202991	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15202992	15203037	1	+	2	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15202992	15203037	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15203038	15203216	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15203217	15203286	1	+	1	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15203217	15203286	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15203287	15203384	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15203385	15203543	1	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15203385	15203543	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15203544	15203681	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15203682	15203801	1	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15203682	15203801	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15203802	15203926	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15203927	15204092	1	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15203927	15204092	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15204093	15204190	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15204191	15204303	1	+	2	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15204191	15204303	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15204304	15204552	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15204553	15204630	1	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15204553	15204630	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15204631	15204743	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15204744	15204965	1	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15204744	15204965	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15204966	15205168	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15205169	15205227	1	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15205169	15205227	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15205228	15205541	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15205542	15205635	1	+	1	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15205542	15205635	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15205636	15205803	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15205804	15205941	1	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15205804	15205941	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15205942	15206051	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15206052	15206276	0.97	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15206052	15206276	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15206277	15206454	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15206455	15207464	1	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15206455	15207464	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15207465	15207601	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15207602	15207822	0.95	+	1	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15207602	15207822	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15207823	15207931	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15207932	15208248	0.96	+	2	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15207932	15208248	.	+	.	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	stop_codon	15208249	15208251	.	+	0	transcript_id "Ledus.S1G159800.t1"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	transcript	15201763	15208248	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	start_codon	15201763	15201765	.	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15201763	15201780	0.75	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15201763	15201780	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15201781	15201946	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15201947	15202019	0.86	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15201947	15202019	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15202020	15202181	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15202182	15202236	1	+	2	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15202182	15202236	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15202237	15202423	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15202424	15202529	1	+	1	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15202424	15202529	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15202530	15202665	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15202666	15202864	1	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15202666	15202864	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15202865	15202991	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15202992	15203037	1	+	2	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15202992	15203037	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15203038	15203216	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15203217	15203286	1	+	1	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15203217	15203286	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15203287	15203384	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15203385	15203543	1	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15203385	15203543	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15203544	15203681	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15203682	15203801	1	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15203682	15203801	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15203802	15203926	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15203927	15204092	1	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15203927	15204092	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15204093	15204190	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15204191	15204303	1	+	2	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15204191	15204303	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15204304	15204552	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15204553	15204630	1	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15204553	15204630	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15204631	15204743	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15204744	15204965	1	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15204744	15204965	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15204966	15205168	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15205169	15205227	1	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15205169	15205227	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15205228	15205541	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15205542	15205635	1	+	1	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15205542	15205635	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15205636	15205800	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15205801	15205941	1	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15205801	15205941	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15205942	15206051	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15206052	15206276	0.97	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15206052	15206276	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15206277	15206454	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15206455	15207464	1	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15206455	15207464	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15207465	15207601	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15207602	15207822	0.94	+	1	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15207602	15207822	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	intron	15207823	15207931	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	CDS	15207932	15208248	1	+	2	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	exon	15207932	15208248	.	+	.	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
Ledus.S1	AUGUSTUS	stop_codon	15208249	15208251	.	+	0	transcript_id "Ledus.S1G159800.t2"; gene_id "Ledus.S1G159800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg663.t1 is derived from g7524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3982154	3983314	.	+	.	Ledus.S2G054500
Ledus.S2	AUGUSTUS	transcript	3982154	3983314	.	+	.	transcript_id "Ledus.S2G054500.t1"; gene_id "Ledus.S2G054500"
Ledus.S2	AUGUSTUS	start_codon	3982154	3982156	.	+	0	transcript_id "Ledus.S2G054500.t1"; gene_id "Ledus.S2G054500"
Ledus.S2	AUGUSTUS	CDS	3982154	3982366	0.39	+	0	transcript_id "Ledus.S2G054500.t1"; gene_id "Ledus.S2G054500"
Ledus.S2	AUGUSTUS	exon	3982154	3982366	.	+	.	transcript_id "Ledus.S2G054500.t1"; gene_id "Ledus.S2G054500"
Ledus.S2	AUGUSTUS	intron	3982367	3982512	.	+	.	transcript_id "Ledus.S2G054500.t1"; gene_id "Ledus.S2G054500"
Ledus.S2	AUGUSTUS	CDS	3982513	3982779	1	+	0	transcript_id "Ledus.S2G054500.t1"; gene_id "Ledus.S2G054500"
Ledus.S2	AUGUSTUS	exon	3982513	3982779	.	+	.	transcript_id "Ledus.S2G054500.t1"; gene_id "Ledus.S2G054500"
Ledus.S2	AUGUSTUS	intron	3982780	3982897	.	+	.	transcript_id "Ledus.S2G054500.t1"; gene_id "Ledus.S2G054500"
Ledus.S2	AUGUSTUS	CDS	3982898	3983314	0.98	+	0	transcript_id "Ledus.S2G054500.t1"; gene_id "Ledus.S2G054500"
Ledus.S2	AUGUSTUS	exon	3982898	3983314	.	+	.	transcript_id "Ledus.S2G054500.t1"; gene_id "Ledus.S2G054500"
Ledus.S2	AUGUSTUS	stop_codon	3983315	3983317	.	+	0	transcript_id "Ledus.S2G054500.t1"; gene_id "Ledus.S2G054500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2639.t1 is derived from g72.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1065573	1066730	.	-	.	Ledus.S1G006000
Ledus.S1	AUGUSTUS	transcript	1066150	1066730	.	-	.	transcript_id "Ledus.S1G006000.t1"; gene_id "Ledus.S1G006000"
Ledus.S1	AUGUSTUS	stop_codon	1066147	1066149	.	-	0	transcript_id "Ledus.S1G006000.t1"; gene_id "Ledus.S1G006000"
Ledus.S1	AUGUSTUS	CDS	1066150	1066186	0.85	-	1	transcript_id "Ledus.S1G006000.t1"; gene_id "Ledus.S1G006000"
Ledus.S1	AUGUSTUS	exon	1066150	1066186	.	-	.	transcript_id "Ledus.S1G006000.t1"; gene_id "Ledus.S1G006000"
Ledus.S1	AUGUSTUS	intron	1066187	1066290	.	-	.	transcript_id "Ledus.S1G006000.t1"; gene_id "Ledus.S1G006000"
Ledus.S1	AUGUSTUS	CDS	1066291	1066730	0.75	-	0	transcript_id "Ledus.S1G006000.t1"; gene_id "Ledus.S1G006000"
Ledus.S1	AUGUSTUS	exon	1066291	1066730	.	-	.	transcript_id "Ledus.S1G006000.t1"; gene_id "Ledus.S1G006000"
Ledus.S1	AUGUSTUS	start_codon	1066728	1066730	.	-	0	transcript_id "Ledus.S1G006000.t1"; gene_id "Ledus.S1G006000"
Ledus.S1	AUGUSTUS	transcript	1065573	1066730	.	-	.	transcript_id "Ledus.S1G006000.t2"; gene_id "Ledus.S1G006000"
Ledus.S1	AUGUSTUS	stop_codon	1065570	1065572	.	-	0	transcript_id "Ledus.S1G006000.t2"; gene_id "Ledus.S1G006000"
Ledus.S1	AUGUSTUS	CDS	1065573	1066730	0.74	-	0	transcript_id "Ledus.S1G006000.t2"; gene_id "Ledus.S1G006000"
Ledus.S1	AUGUSTUS	exon	1065573	1066730	.	-	.	transcript_id "Ledus.S1G006000.t2"; gene_id "Ledus.S1G006000"
Ledus.S1	AUGUSTUS	start_codon	1066728	1066730	.	-	0	transcript_id "Ledus.S1G006000.t2"; gene_id "Ledus.S1G006000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3463.t1 is derived from g898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8498913	8500146	.	-	.	Ledus.S1G088400
Ledus.S1	AUGUSTUS	transcript	8498913	8500146	.	-	.	transcript_id "Ledus.S1G088400.t1"; gene_id "Ledus.S1G088400"
Ledus.S1	AUGUSTUS	stop_codon	8498910	8498912	.	-	0	transcript_id "Ledus.S1G088400.t1"; gene_id "Ledus.S1G088400"
Ledus.S1	AUGUSTUS	CDS	8498913	8499018	0.33	-	1	transcript_id "Ledus.S1G088400.t1"; gene_id "Ledus.S1G088400"
Ledus.S1	AUGUSTUS	exon	8498913	8499018	.	-	.	transcript_id "Ledus.S1G088400.t1"; gene_id "Ledus.S1G088400"
Ledus.S1	AUGUSTUS	intron	8499019	8499118	.	-	.	transcript_id "Ledus.S1G088400.t1"; gene_id "Ledus.S1G088400"
Ledus.S1	AUGUSTUS	CDS	8499119	8500146	1	-	0	transcript_id "Ledus.S1G088400.t1"; gene_id "Ledus.S1G088400"
Ledus.S1	AUGUSTUS	exon	8499119	8500146	.	-	.	transcript_id "Ledus.S1G088400.t1"; gene_id "Ledus.S1G088400"
Ledus.S1	AUGUSTUS	start_codon	8500144	8500146	.	-	0	transcript_id "Ledus.S1G088400.t1"; gene_id "Ledus.S1G088400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6529.t1 is derived from g3972.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32134331	32135114	.	-	.	Ledus.S1G395000
Ledus.S1	AUGUSTUS	transcript	32134331	32135114	.	-	.	transcript_id "Ledus.S1G395000.t1"; gene_id "Ledus.S1G395000"
Ledus.S1	AUGUSTUS	stop_codon	32134328	32134330	.	-	0	transcript_id "Ledus.S1G395000.t1"; gene_id "Ledus.S1G395000"
Ledus.S1	AUGUSTUS	CDS	32134331	32134345	1	-	0	transcript_id "Ledus.S1G395000.t1"; gene_id "Ledus.S1G395000"
Ledus.S1	AUGUSTUS	exon	32134331	32134345	.	-	.	transcript_id "Ledus.S1G395000.t1"; gene_id "Ledus.S1G395000"
Ledus.S1	AUGUSTUS	intron	32134346	32134519	.	-	.	transcript_id "Ledus.S1G395000.t1"; gene_id "Ledus.S1G395000"
Ledus.S1	AUGUSTUS	CDS	32134520	32134592	1	-	1	transcript_id "Ledus.S1G395000.t1"; gene_id "Ledus.S1G395000"
Ledus.S1	AUGUSTUS	exon	32134520	32134592	.	-	.	transcript_id "Ledus.S1G395000.t1"; gene_id "Ledus.S1G395000"
Ledus.S1	AUGUSTUS	intron	32134593	32134863	.	-	.	transcript_id "Ledus.S1G395000.t1"; gene_id "Ledus.S1G395000"
Ledus.S1	AUGUSTUS	CDS	32134864	32135114	0.97	-	0	transcript_id "Ledus.S1G395000.t1"; gene_id "Ledus.S1G395000"
Ledus.S1	AUGUSTUS	exon	32134864	32135114	.	-	.	transcript_id "Ledus.S1G395000.t1"; gene_id "Ledus.S1G395000"
Ledus.S1	AUGUSTUS	start_codon	32135112	32135114	.	-	0	transcript_id "Ledus.S1G395000.t1"; gene_id "Ledus.S1G395000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9022.t1 is derived from g10052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3897005	3900632	.	-	.	Ledus.S3G049900
Ledus.S3	AUGUSTUS	transcript	3897005	3900632	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	stop_codon	3897002	3897004	.	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3897005	3897055	0.98	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3897005	3897055	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3897056	3897139	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3897140	3897289	0.99	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3897140	3897289	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3897290	3897411	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3897412	3897552	0.99	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3897412	3897552	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3897553	3897634	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3897635	3897826	1	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3897635	3897826	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3897827	3897935	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3897936	3898157	0.85	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3897936	3898157	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3898158	3898232	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3898233	3898370	1	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3898233	3898370	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3898371	3898458	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3898459	3898554	1	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3898459	3898554	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3898555	3898692	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3898693	3898771	1	-	1	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3898693	3898771	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3898772	3898908	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3898909	3899012	1	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3898909	3899012	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3899013	3899145	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3899146	3899299	1	-	1	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3899146	3899299	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3899300	3899474	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3899475	3899597	1	-	1	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3899475	3899597	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3899598	3899690	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3899691	3899818	1	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3899691	3899818	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3899819	3899936	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3899937	3900029	1	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3899937	3900029	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3900030	3900127	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3900128	3900171	1	-	2	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3900128	3900171	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	intron	3900172	3900520	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	CDS	3900521	3900632	1	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	exon	3900521	3900632	.	-	.	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
Ledus.S3	AUGUSTUS	start_codon	3900630	3900632	.	-	0	transcript_id "Ledus.S3G049900.t1"; gene_id "Ledus.S3G049900"
# This transcript jg8780.t2 is derived from g9810.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8781.t1 is derived from g9811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1932078	1933603	.	+	.	Ledus.S3G025800
Ledus.S3	AUGUSTUS	transcript	1932078	1933603	.	+	.	transcript_id "Ledus.S3G025800.t1"; gene_id "Ledus.S3G025800"
Ledus.S3	AUGUSTUS	start_codon	1932078	1932080	.	+	0	transcript_id "Ledus.S3G025800.t1"; gene_id "Ledus.S3G025800"
Ledus.S3	AUGUSTUS	CDS	1932078	1932170	1	+	0	transcript_id "Ledus.S3G025800.t1"; gene_id "Ledus.S3G025800"
Ledus.S3	AUGUSTUS	exon	1932078	1932170	.	+	.	transcript_id "Ledus.S3G025800.t1"; gene_id "Ledus.S3G025800"
Ledus.S3	AUGUSTUS	intron	1932171	1932263	.	+	.	transcript_id "Ledus.S3G025800.t1"; gene_id "Ledus.S3G025800"
Ledus.S3	AUGUSTUS	CDS	1932264	1932498	1	+	0	transcript_id "Ledus.S3G025800.t1"; gene_id "Ledus.S3G025800"
Ledus.S3	AUGUSTUS	exon	1932264	1932498	.	+	.	transcript_id "Ledus.S3G025800.t1"; gene_id "Ledus.S3G025800"
Ledus.S3	AUGUSTUS	intron	1932499	1932581	.	+	.	transcript_id "Ledus.S3G025800.t1"; gene_id "Ledus.S3G025800"
Ledus.S3	AUGUSTUS	CDS	1932582	1933603	1	+	2	transcript_id "Ledus.S3G025800.t1"; gene_id "Ledus.S3G025800"
Ledus.S3	AUGUSTUS	exon	1932582	1933603	.	+	.	transcript_id "Ledus.S3G025800.t1"; gene_id "Ledus.S3G025800"
Ledus.S3	AUGUSTUS	stop_codon	1933604	1933606	.	+	0	transcript_id "Ledus.S3G025800.t1"; gene_id "Ledus.S3G025800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4087.t1 is derived from g1523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14532333	14533913	.	+	.	Ledus.S1G150800
Ledus.S1	AUGUSTUS	transcript	14532333	14533913	.	+	.	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	start_codon	14532333	14532335	.	+	0	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	CDS	14532333	14532536	0.97	+	0	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	exon	14532333	14532536	.	+	.	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	intron	14532537	14532656	.	+	.	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	CDS	14532657	14533085	0.96	+	0	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	exon	14532657	14533085	.	+	.	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	intron	14533086	14533201	.	+	.	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	CDS	14533202	14533366	1	+	0	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	exon	14533202	14533366	.	+	.	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	intron	14533367	14533520	.	+	.	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	CDS	14533521	14533649	1	+	0	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	exon	14533521	14533649	.	+	.	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	intron	14533650	14533826	.	+	.	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	CDS	14533827	14533913	1	+	0	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	exon	14533827	14533913	.	+	.	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
Ledus.S1	AUGUSTUS	stop_codon	14533914	14533916	.	+	0	transcript_id "Ledus.S1G150800.t1"; gene_id "Ledus.S1G150800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1006.t1 is derived from g7867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6635331	6635639	.	+	.	Ledus.S2G088800
Ledus.S2	AUGUSTUS	transcript	6635331	6635639	.	+	.	transcript_id "Ledus.S2G088800.t1"; gene_id "Ledus.S2G088800"
Ledus.S2	AUGUSTUS	start_codon	6635331	6635333	.	+	0	transcript_id "Ledus.S2G088800.t1"; gene_id "Ledus.S2G088800"
Ledus.S2	AUGUSTUS	CDS	6635331	6635639	0.57	+	0	transcript_id "Ledus.S2G088800.t1"; gene_id "Ledus.S2G088800"
Ledus.S2	AUGUSTUS	exon	6635331	6635639	.	+	.	transcript_id "Ledus.S2G088800.t1"; gene_id "Ledus.S2G088800"
Ledus.S2	AUGUSTUS	stop_codon	6635640	6635642	.	+	0	transcript_id "Ledus.S2G088800.t1"; gene_id "Ledus.S2G088800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12957.t1 is derived from g6767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1033153	1034505	.	+	.	Ledus.S6G001900
Ledus.S6	AUGUSTUS	transcript	1033153	1034505	.	+	.	transcript_id "Ledus.S6G001900.t1"; gene_id "Ledus.S6G001900"
Ledus.S6	AUGUSTUS	start_codon	1033153	1033155	.	+	0	transcript_id "Ledus.S6G001900.t1"; gene_id "Ledus.S6G001900"
Ledus.S6	AUGUSTUS	CDS	1033153	1033847	0.95	+	0	transcript_id "Ledus.S6G001900.t1"; gene_id "Ledus.S6G001900"
Ledus.S6	AUGUSTUS	exon	1033153	1033847	.	+	.	transcript_id "Ledus.S6G001900.t1"; gene_id "Ledus.S6G001900"
Ledus.S6	AUGUSTUS	intron	1033848	1033934	.	+	.	transcript_id "Ledus.S6G001900.t1"; gene_id "Ledus.S6G001900"
Ledus.S6	AUGUSTUS	CDS	1033935	1034241	1	+	1	transcript_id "Ledus.S6G001900.t1"; gene_id "Ledus.S6G001900"
Ledus.S6	AUGUSTUS	exon	1033935	1034241	.	+	.	transcript_id "Ledus.S6G001900.t1"; gene_id "Ledus.S6G001900"
Ledus.S6	AUGUSTUS	intron	1034242	1034352	.	+	.	transcript_id "Ledus.S6G001900.t1"; gene_id "Ledus.S6G001900"
Ledus.S6	AUGUSTUS	CDS	1034353	1034505	1	+	0	transcript_id "Ledus.S6G001900.t1"; gene_id "Ledus.S6G001900"
Ledus.S6	AUGUSTUS	exon	1034353	1034505	.	+	.	transcript_id "Ledus.S6G001900.t1"; gene_id "Ledus.S6G001900"
Ledus.S6	AUGUSTUS	stop_codon	1034506	1034508	.	+	0	transcript_id "Ledus.S6G001900.t1"; gene_id "Ledus.S6G001900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3307.t1 is derived from g742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7409605	7411221	.	-	.	Ledus.S1G072800
Ledus.S1	AUGUSTUS	transcript	7409605	7411221	.	-	.	transcript_id "Ledus.S1G072800.t1"; gene_id "Ledus.S1G072800"
Ledus.S1	AUGUSTUS	stop_codon	7409602	7409604	.	-	0	transcript_id "Ledus.S1G072800.t1"; gene_id "Ledus.S1G072800"
Ledus.S1	AUGUSTUS	CDS	7409605	7411221	0.6	-	0	transcript_id "Ledus.S1G072800.t1"; gene_id "Ledus.S1G072800"
Ledus.S1	AUGUSTUS	exon	7409605	7411221	.	-	.	transcript_id "Ledus.S1G072800.t1"; gene_id "Ledus.S1G072800"
Ledus.S1	AUGUSTUS	start_codon	7411219	7411221	.	-	0	transcript_id "Ledus.S1G072800.t1"; gene_id "Ledus.S1G072800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg959.t1 is derived from g7820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6318026	6318961	.	+	.	Ledus.S2G084100
Ledus.S2	AUGUSTUS	transcript	6318026	6318961	.	+	.	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	start_codon	6318026	6318028	.	+	0	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	CDS	6318026	6318252	0.87	+	0	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	exon	6318026	6318252	.	+	.	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	intron	6318253	6318339	.	+	.	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	CDS	6318340	6318476	1	+	1	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	exon	6318340	6318476	.	+	.	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	intron	6318477	6318554	.	+	.	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	CDS	6318555	6318691	1	+	2	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	exon	6318555	6318691	.	+	.	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	intron	6318692	6318787	.	+	.	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	CDS	6318788	6318961	1	+	0	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	exon	6318788	6318961	.	+	.	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
Ledus.S2	AUGUSTUS	stop_codon	6318962	6318964	.	+	0	transcript_id "Ledus.S2G084100.t1"; gene_id "Ledus.S2G084100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2244.t1 is derived from g9107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16445237	16448679	.	-	.	Ledus.S2G212600
Ledus.S2	AUGUSTUS	transcript	16445237	16448679	.	-	.	transcript_id "Ledus.S2G212600.t1"; gene_id "Ledus.S2G212600"
Ledus.S2	AUGUSTUS	stop_codon	16445234	16445236	.	-	0	transcript_id "Ledus.S2G212600.t1"; gene_id "Ledus.S2G212600"
Ledus.S2	AUGUSTUS	CDS	16445237	16445902	0.6	-	0	transcript_id "Ledus.S2G212600.t1"; gene_id "Ledus.S2G212600"
Ledus.S2	AUGUSTUS	exon	16445237	16445902	.	-	.	transcript_id "Ledus.S2G212600.t1"; gene_id "Ledus.S2G212600"
Ledus.S2	AUGUSTUS	intron	16445903	16448631	.	-	.	transcript_id "Ledus.S2G212600.t1"; gene_id "Ledus.S2G212600"
Ledus.S2	AUGUSTUS	CDS	16448632	16448679	0.01	-	0	transcript_id "Ledus.S2G212600.t1"; gene_id "Ledus.S2G212600"
Ledus.S2	AUGUSTUS	exon	16448632	16448679	.	-	.	transcript_id "Ledus.S2G212600.t1"; gene_id "Ledus.S2G212600"
Ledus.S2	AUGUSTUS	start_codon	16448677	16448679	.	-	0	transcript_id "Ledus.S2G212600.t1"; gene_id "Ledus.S2G212600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1744.t1 is derived from g8606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12299459	12300822	.	+	.	Ledus.S2G162600
Ledus.S2	AUGUSTUS	transcript	12299459	12300822	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	start_codon	12299459	12299461	.	+	0	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	CDS	12299459	12299590	1	+	0	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	exon	12299459	12299590	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	intron	12299591	12299671	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	CDS	12299672	12299788	1	+	0	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	exon	12299672	12299788	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	intron	12299789	12299861	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	CDS	12299862	12299996	1	+	0	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	exon	12299862	12299996	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	intron	12299997	12300065	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	CDS	12300066	12300191	1	+	0	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	exon	12300066	12300191	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	intron	12300192	12300288	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	CDS	12300289	12300390	1	+	0	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	exon	12300289	12300390	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	intron	12300391	12300498	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	CDS	12300499	12300644	1	+	0	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	exon	12300499	12300644	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	intron	12300645	12300806	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	CDS	12300807	12300822	1	+	1	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	exon	12300807	12300822	.	+	.	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
Ledus.S2	AUGUSTUS	stop_codon	12300823	12300825	.	+	0	transcript_id "Ledus.S2G162600.t1"; gene_id "Ledus.S2G162600"
# This transcript jg11517.t2 is derived from g5135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11518.t1 is derived from g5136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5020800	5022477	.	+	.	Ledus.S4G067400
Ledus.S4	AUGUSTUS	transcript	5020800	5022477	.	+	.	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	start_codon	5020800	5020802	.	+	0	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	CDS	5020800	5021297	0.99	+	0	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	exon	5020800	5021297	.	+	.	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	intron	5021298	5021378	.	+	.	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	CDS	5021379	5021440	0.66	+	0	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	exon	5021379	5021440	.	+	.	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	intron	5021441	5021507	.	+	.	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	CDS	5021508	5021663	0.9	+	1	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	exon	5021508	5021663	.	+	.	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	intron	5021664	5021759	.	+	.	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	CDS	5021760	5021992	0.99	+	1	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	exon	5021760	5021992	.	+	.	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	intron	5021993	5022116	.	+	.	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	CDS	5022117	5022274	1	+	2	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	exon	5022117	5022274	.	+	.	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	intron	5022275	5022378	.	+	.	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	CDS	5022379	5022477	0.97	+	0	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	exon	5022379	5022477	.	+	.	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
Ledus.S4	AUGUSTUS	stop_codon	5022478	5022480	.	+	0	transcript_id "Ledus.S4G067400.t1"; gene_id "Ledus.S4G067400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg874.t1 is derived from g7735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5921995	5925149	.	-	.	Ledus.S2G075600
Ledus.S2	AUGUSTUS	transcript	5921995	5925149	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	stop_codon	5921992	5921994	.	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5921995	5922263	1	-	2	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5921995	5922263	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5922264	5922351	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5922352	5922442	1	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5922352	5922442	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5922443	5922543	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5922544	5922711	0.69	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5922544	5922711	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5922712	5922802	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5922803	5922913	1	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5922803	5922913	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5922914	5923004	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5923005	5923064	1	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5923005	5923064	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5923065	5923185	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5923186	5923227	1	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5923186	5923227	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5923228	5923315	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5923316	5923378	1	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5923316	5923378	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5923379	5923496	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5923497	5923568	0.98	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5923497	5923568	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5923569	5923711	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5923712	5923813	1	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5923712	5923813	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5923814	5923975	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5923976	5924080	1	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5923976	5924080	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5924081	5924164	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5924165	5924237	1	-	1	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5924165	5924237	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5924238	5924352	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5924353	5924405	1	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5924353	5924405	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5924406	5924529	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5924530	5924648	0.99	-	2	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5924530	5924648	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	intron	5924649	5924749	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	CDS	5924750	5925149	0.6	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	exon	5924750	5925149	.	-	.	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
Ledus.S2	AUGUSTUS	start_codon	5925147	5925149	.	-	0	transcript_id "Ledus.S2G075600.t1"; gene_id "Ledus.S2G075600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11294.t1 is derived from g4912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3419695	3424226	.	+	.	Ledus.S4G045000
Ledus.S4	AUGUSTUS	transcript	3419695	3424226	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	start_codon	3419695	3419697	.	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3419695	3419763	0.47	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3419695	3419763	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3419764	3419854	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3419855	3419992	0.97	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3419855	3419992	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3419993	3420109	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3420110	3420244	1	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3420110	3420244	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3420245	3420447	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3420448	3420627	0.96	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3420448	3420627	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3420628	3420731	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3420732	3420938	0.98	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3420732	3420938	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3420939	3421040	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3421041	3421160	1	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3421041	3421160	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3421161	3421251	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3421252	3421371	1	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3421252	3421371	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3421372	3421470	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3421471	3421593	1	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3421471	3421593	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3421594	3421683	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3421684	3421788	1	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3421684	3421788	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3421789	3421867	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3421868	3422012	1	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3421868	3422012	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3422013	3422142	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3422143	3422307	1	+	2	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3422143	3422307	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3422308	3422398	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3422399	3422637	1	+	2	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3422399	3422637	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3422638	3422738	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3422739	3422771	1	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3422739	3422771	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3422772	3422856	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3422857	3422938	1	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3422857	3422938	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3422939	3423061	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3423062	3423180	0.59	+	2	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3423062	3423180	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3423181	3423326	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3423327	3423500	1	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3423327	3423500	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3423501	3423588	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3423589	3423771	1	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3423589	3423771	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3423772	3423867	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3423868	3424049	1	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3423868	3424049	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	intron	3424050	3424132	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	CDS	3424133	3424226	1	+	1	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	exon	3424133	3424226	.	+	.	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
Ledus.S4	AUGUSTUS	stop_codon	3424227	3424229	.	+	0	transcript_id "Ledus.S4G045000.t1"; gene_id "Ledus.S4G045000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4540.t1 is derived from g1977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17593095	17594603	.	+	.	Ledus.S1G196100
Ledus.S1	AUGUSTUS	transcript	17593095	17594603	.	+	.	transcript_id "Ledus.S1G196100.t1"; gene_id "Ledus.S1G196100"
Ledus.S1	AUGUSTUS	start_codon	17593095	17593097	.	+	0	transcript_id "Ledus.S1G196100.t1"; gene_id "Ledus.S1G196100"
Ledus.S1	AUGUSTUS	CDS	17593095	17594603	1	+	0	transcript_id "Ledus.S1G196100.t1"; gene_id "Ledus.S1G196100"
Ledus.S1	AUGUSTUS	exon	17593095	17594603	.	+	.	transcript_id "Ledus.S1G196100.t1"; gene_id "Ledus.S1G196100"
Ledus.S1	AUGUSTUS	stop_codon	17594604	17594606	.	+	0	transcript_id "Ledus.S1G196100.t1"; gene_id "Ledus.S1G196100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11976.t1 is derived from g5595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8242702	8245821	.	+	.	Ledus.S4G113200
Ledus.S4	AUGUSTUS	transcript	8242702	8245821	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	start_codon	8242702	8242704	.	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	CDS	8242702	8242875	1	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	exon	8242702	8242875	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	intron	8242876	8243195	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	CDS	8243196	8243309	0.86	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	exon	8243196	8243309	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	intron	8243310	8243423	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	CDS	8243424	8243528	1	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	exon	8243424	8243528	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	intron	8243529	8243679	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	CDS	8243680	8243822	1	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	exon	8243680	8243822	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	intron	8243823	8243944	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	CDS	8243945	8244041	1	+	1	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	exon	8243945	8244041	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	intron	8244042	8244130	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	CDS	8244131	8244298	1	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	exon	8244131	8244298	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	intron	8244299	8244416	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	CDS	8244417	8244488	1	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	exon	8244417	8244488	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	intron	8244489	8244808	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	CDS	8244809	8244958	1	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	exon	8244809	8244958	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	intron	8244959	8245054	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	CDS	8245055	8245132	1	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	exon	8245055	8245132	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	intron	8245133	8245219	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	CDS	8245220	8245348	1	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	exon	8245220	8245348	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	intron	8245349	8245443	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	CDS	8245444	8245590	1	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	exon	8245444	8245590	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	intron	8245591	8245677	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	CDS	8245678	8245821	0.95	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	exon	8245678	8245821	.	+	.	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
Ledus.S4	AUGUSTUS	stop_codon	8245822	8245824	.	+	0	transcript_id "Ledus.S4G113200.t1"; gene_id "Ledus.S4G113200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3041.t1 is derived from g476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5454405	5454974	.	+	.	Ledus.S1G046200
Ledus.S1	AUGUSTUS	transcript	5454405	5454974	.	+	.	transcript_id "Ledus.S1G046200.t1"; gene_id "Ledus.S1G046200"
Ledus.S1	AUGUSTUS	start_codon	5454405	5454407	.	+	0	transcript_id "Ledus.S1G046200.t1"; gene_id "Ledus.S1G046200"
Ledus.S1	AUGUSTUS	CDS	5454405	5454974	0.91	+	0	transcript_id "Ledus.S1G046200.t1"; gene_id "Ledus.S1G046200"
Ledus.S1	AUGUSTUS	exon	5454405	5454974	.	+	.	transcript_id "Ledus.S1G046200.t1"; gene_id "Ledus.S1G046200"
Ledus.S1	AUGUSTUS	stop_codon	5454975	5454977	.	+	0	transcript_id "Ledus.S1G046200.t1"; gene_id "Ledus.S1G046200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6403.t1 is derived from g3846.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31058348	31067892	.	-	.	Ledus.S1G382400
Ledus.S1	AUGUSTUS	transcript	31058348	31067892	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	stop_codon	31058345	31058347	.	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31058348	31058384	0.74	-	1	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31058348	31058384	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31058385	31058572	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31058573	31058792	0.42	-	2	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31058573	31058792	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31058793	31058894	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31058895	31058973	0.38	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31058895	31058973	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31058974	31059153	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31059154	31059230	0.42	-	2	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31059154	31059230	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31059231	31059526	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31059527	31059548	0.47	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31059527	31059548	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31059549	31059605	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31059606	31060118	0.46	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31059606	31060118	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31060119	31060206	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31060207	31060334	1	-	2	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31060207	31060334	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31060335	31060440	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31060441	31060537	1	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31060441	31060537	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31060538	31060620	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31060621	31061046	1	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31060621	31061046	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31061047	31061181	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31061182	31061400	1	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31061182	31061400	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31061401	31061536	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31061537	31061814	1	-	2	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31061537	31061814	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31061815	31061911	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31061912	31062041	1	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31061912	31062041	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31062042	31062139	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31062140	31062369	0.94	-	2	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31062140	31062369	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31062370	31062490	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31062491	31062538	0.99	-	2	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31062491	31062538	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31062539	31062613	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31062614	31062647	0.99	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31062614	31062647	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31062648	31062783	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31062784	31062924	1	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31062784	31062924	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31062925	31063017	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31063018	31063113	0.91	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31063018	31063113	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31063114	31063270	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31063271	31063340	1	-	1	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31063271	31063340	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31063341	31063498	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31063499	31063554	1	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31063499	31063554	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31063555	31063674	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31063675	31063770	0.86	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31063675	31063770	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31063771	31063855	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31063856	31064264	1	-	1	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31063856	31064264	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31064265	31064338	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31064339	31064451	1	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31064339	31064451	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31064452	31064531	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31064532	31064805	0.52	-	1	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31064532	31064805	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31064806	31065248	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31065249	31065313	0.71	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31065249	31065313	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31065314	31065407	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31065408	31065501	1	-	1	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31065408	31065501	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31065502	31065590	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31065591	31065688	1	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31065591	31065688	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31065689	31065762	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31065763	31065871	1	-	1	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31065763	31065871	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31065872	31065958	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31065959	31066000	1	-	1	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31065959	31066000	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31066001	31066089	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31066090	31066165	1	-	2	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31066090	31066165	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31066166	31066284	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31066285	31066403	0.85	-	1	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31066285	31066403	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31066404	31066522	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31066523	31066591	1	-	1	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31066523	31066591	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31066592	31066673	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31066674	31066882	1	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31066674	31066882	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31066883	31067010	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31067011	31067093	1	-	2	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31067011	31067093	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31067094	31067215	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31067216	31067365	1	-	2	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31067216	31067365	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31067366	31067486	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31067487	31067892	0.98	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31067487	31067892	.	-	.	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	start_codon	31067890	31067892	.	-	0	transcript_id "Ledus.S1G382400.t1"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	transcript	31058348	31067892	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	stop_codon	31058345	31058347	.	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31058348	31058384	0.8	-	1	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31058348	31058384	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31058385	31058572	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31058573	31058792	0.44	-	2	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31058573	31058792	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31058793	31058894	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31058895	31058973	0.42	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31058895	31058973	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31058974	31059153	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31059154	31059230	0.4	-	2	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31059154	31059230	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31059231	31059526	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31059527	31059548	0.48	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31059527	31059548	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31059549	31059605	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31059606	31060118	0.49	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31059606	31060118	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31060119	31060206	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31060207	31060334	1	-	2	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31060207	31060334	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31060335	31060440	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31060441	31060537	1	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31060441	31060537	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31060538	31060620	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31060621	31061046	1	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31060621	31061046	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31061047	31061181	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31061182	31061330	0.82	-	2	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31061182	31061330	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31061331	31061577	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31061578	31061814	0.83	-	2	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31061578	31061814	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31061815	31061911	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31061912	31062041	1	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31061912	31062041	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31062042	31062139	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31062140	31062369	0.95	-	2	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31062140	31062369	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31062370	31062490	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31062491	31062538	0.98	-	2	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31062491	31062538	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31062539	31062613	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31062614	31062647	0.98	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31062614	31062647	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31062648	31062783	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31062784	31062924	1	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31062784	31062924	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31062925	31063017	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31063018	31063113	0.86	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31063018	31063113	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31063114	31063270	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31063271	31063340	0.99	-	1	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31063271	31063340	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31063341	31063498	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31063499	31063554	1	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31063499	31063554	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31063555	31063674	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31063675	31063770	0.84	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31063675	31063770	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31063771	31063855	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31063856	31064264	1	-	1	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31063856	31064264	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31064265	31064338	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31064339	31064451	1	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31064339	31064451	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31064452	31064531	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31064532	31064805	0.52	-	1	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31064532	31064805	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31064806	31065248	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31065249	31065313	0.64	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31065249	31065313	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31065314	31065407	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31065408	31065501	1	-	1	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31065408	31065501	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31065502	31065590	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31065591	31065688	1	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31065591	31065688	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31065689	31065762	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31065763	31065871	1	-	1	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31065763	31065871	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31065872	31065958	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31065959	31066000	1	-	1	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31065959	31066000	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31066001	31066089	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31066090	31066165	1	-	2	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31066090	31066165	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31066166	31066284	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31066285	31066403	0.8	-	1	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31066285	31066403	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31066404	31066522	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31066523	31066591	1	-	1	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31066523	31066591	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31066592	31066673	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31066674	31066882	1	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31066674	31066882	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31066883	31067010	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31067011	31067093	1	-	2	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31067011	31067093	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31067094	31067215	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31067216	31067365	1	-	2	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31067216	31067365	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	intron	31067366	31067486	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	CDS	31067487	31067892	0.98	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	exon	31067487	31067892	.	-	.	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
Ledus.S1	AUGUSTUS	start_codon	31067890	31067892	.	-	0	transcript_id "Ledus.S1G382400.t2"; gene_id "Ledus.S1G382400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6193.t1 is derived from g3636.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29529842	29530051	.	+	.	Ledus.S1G361400
Ledus.S1	AUGUSTUS	transcript	29529842	29530051	.	+	.	transcript_id "Ledus.S1G361400.t1"; gene_id "Ledus.S1G361400"
Ledus.S1	AUGUSTUS	start_codon	29529842	29529844	.	+	0	transcript_id "Ledus.S1G361400.t1"; gene_id "Ledus.S1G361400"
Ledus.S1	AUGUSTUS	CDS	29529842	29530051	0.6	+	0	transcript_id "Ledus.S1G361400.t1"; gene_id "Ledus.S1G361400"
Ledus.S1	AUGUSTUS	exon	29529842	29530051	.	+	.	transcript_id "Ledus.S1G361400.t1"; gene_id "Ledus.S1G361400"
Ledus.S1	AUGUSTUS	stop_codon	29530052	29530054	.	+	0	transcript_id "Ledus.S1G361400.t1"; gene_id "Ledus.S1G361400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9983.t1 is derived from g11013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11735428	11744902	.	-	.	Ledus.S3G146000
Ledus.S3	AUGUSTUS	transcript	11735428	11744902	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	stop_codon	11735425	11735427	.	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11735428	11735500	0.62	-	1	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11735428	11735500	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11735501	11735592	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11735593	11735666	1	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11735593	11735666	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11735667	11735761	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11735762	11735842	0.99	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11735762	11735842	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11735843	11735963	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11735964	11736055	1	-	2	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11735964	11736055	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11736056	11736182	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11736183	11736340	1	-	1	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11736183	11736340	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11736341	11736463	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11736464	11736554	1	-	2	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11736464	11736554	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11736555	11736696	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11736697	11736782	1	-	1	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11736697	11736782	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11736783	11736962	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11736963	11737018	1	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11736963	11737018	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11737019	11737111	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11737112	11737183	1	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11737112	11737183	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11737184	11737342	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11737343	11737429	1	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11737343	11737429	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11737430	11737532	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11737533	11737592	1	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11737533	11737592	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11737593	11737680	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11737681	11737767	1	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11737681	11737767	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11737768	11737941	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11737942	11738143	1	-	1	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11737942	11738143	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11738144	11738249	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11738250	11738379	0.77	-	2	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11738250	11738379	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11738380	11738488	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11738489	11738584	0.99	-	2	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11738489	11738584	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11738585	11739142	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11739143	11739896	0.7	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11739143	11739896	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11739897	11739993	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11739994	11740026	0.53	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11739994	11740026	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11740027	11740175	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11740176	11740274	0.9	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11740176	11740274	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11740275	11740468	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11740469	11740600	0.24	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11740469	11740600	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11740601	11740769	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11740770	11740796	0.62	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11740770	11740796	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11740797	11740895	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11740896	11741118	0.7	-	1	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11740896	11741118	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11741119	11741204	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11741205	11741273	0.81	-	1	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11741205	11741273	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11741274	11741380	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11741381	11741418	0.8	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11741381	11741418	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11741419	11741560	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11741561	11741621	1	-	1	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11741561	11741621	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11741622	11741760	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11741761	11741828	0.74	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11741761	11741828	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11741829	11741935	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11741936	11742114	0.75	-	2	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11741936	11742114	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11742115	11742211	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11742212	11742276	1	-	1	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11742212	11742276	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11742277	11742370	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11742371	11742444	1	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11742371	11742444	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11742445	11742644	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11742645	11742746	0.91	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11742645	11742746	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11742747	11742845	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11742846	11742965	0.82	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11742846	11742965	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11742966	11743183	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11743184	11743271	1	-	1	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11743184	11743271	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11743272	11743352	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11743353	11743415	1	-	1	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11743353	11743415	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11743416	11743492	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11743493	11743572	1	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11743493	11743572	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11743573	11743666	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11743667	11743723	1	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11743667	11743723	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11743724	11743799	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11743800	11743872	1	-	1	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11743800	11743872	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11743873	11743940	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11743941	11744407	1	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11743941	11744407	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11744408	11744488	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11744489	11744567	1	-	1	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11744489	11744567	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	intron	11744568	11744642	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	CDS	11744643	11744902	0.94	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	exon	11744643	11744902	.	-	.	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
Ledus.S3	AUGUSTUS	start_codon	11744900	11744902	.	-	0	transcript_id "Ledus.S3G146000.t1"; gene_id "Ledus.S3G146000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12436.t1 is derived from g6057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12007315	12009903	.	+	.	Ledus.S4G159200
Ledus.S4	AUGUSTUS	transcript	12007315	12009903	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	start_codon	12007315	12007317	.	+	0	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	CDS	12007315	12007364	0.32	+	0	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	exon	12007315	12007364	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	intron	12007365	12007546	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	CDS	12007547	12007595	0.53	+	1	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	exon	12007547	12007595	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	intron	12007596	12007664	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	CDS	12007665	12007712	0.6	+	0	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	exon	12007665	12007712	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	intron	12007713	12007835	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	CDS	12007836	12008516	0.58	+	0	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	exon	12007836	12008516	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	intron	12008517	12008616	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	CDS	12008617	12008883	1	+	0	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	exon	12008617	12008883	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	intron	12008884	12009068	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	CDS	12009069	12009398	0.58	+	0	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	exon	12009069	12009398	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	intron	12009399	12009521	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	CDS	12009522	12009690	0.96	+	0	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	exon	12009522	12009690	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	intron	12009691	12009787	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	CDS	12009788	12009903	0.96	+	2	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	exon	12009788	12009903	.	+	.	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
Ledus.S4	AUGUSTUS	stop_codon	12009904	12009906	.	+	0	transcript_id "Ledus.S4G159200.t1"; gene_id "Ledus.S4G159200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11121.t1 is derived from g4739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1992912	1998915	.	-	.	Ledus.S4G027700
Ledus.S4	AUGUSTUS	transcript	1992912	1998915	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	stop_codon	1992909	1992911	.	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1992912	1993019	0.98	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1992912	1993019	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1993020	1993205	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1993206	1993289	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1993206	1993289	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1993290	1993395	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1993396	1993476	0.99	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1993396	1993476	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1993477	1993607	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1993608	1993785	1	-	1	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1993608	1993785	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1993786	1994059	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1994060	1994203	1	-	1	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1994060	1994203	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1994204	1994277	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1994278	1994324	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1994278	1994324	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1994325	1994424	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1994425	1994481	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1994425	1994481	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1994482	1994623	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1994624	1994722	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1994624	1994722	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1994723	1995001	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1995002	1995124	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1995002	1995124	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1995125	1995301	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1995302	1995424	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1995302	1995424	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1995425	1995505	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1995506	1995619	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1995506	1995619	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1995620	1995943	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1995944	1996132	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1995944	1996132	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1996133	1996209	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1996210	1996376	1	-	2	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1996210	1996376	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1996377	1996453	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1996454	1996538	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1996454	1996538	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1996539	1996634	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1996635	1996832	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1996635	1996832	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1996833	1997090	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1997091	1997180	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1997091	1997180	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1997181	1997296	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1997297	1997356	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1997297	1997356	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1997357	1997443	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1997444	1997482	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1997444	1997482	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1997483	1997566	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1997567	1997845	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1997567	1997845	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1997846	1998186	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1998187	1998320	0.71	-	2	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1998187	1998320	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1998321	1998513	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1998514	1998580	1	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1998514	1998580	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	intron	1998581	1998846	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	CDS	1998847	1998915	0.83	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	exon	1998847	1998915	.	-	.	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
Ledus.S4	AUGUSTUS	start_codon	1998913	1998915	.	-	0	transcript_id "Ledus.S4G027700.t1"; gene_id "Ledus.S4G027700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7365.t1 is derived from g12036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1541344	1544359	.	+	.	Ledus.S5G014300
Ledus.S5	AUGUSTUS	transcript	1541344	1544359	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	start_codon	1541344	1541346	.	+	0	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	CDS	1541344	1541616	0.91	+	0	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	exon	1541344	1541616	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	intron	1541617	1541784	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	CDS	1541785	1541862	1	+	0	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	exon	1541785	1541862	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	intron	1541863	1541940	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	CDS	1541941	1542011	0.95	+	0	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	exon	1541941	1542011	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	intron	1542012	1542122	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	CDS	1542123	1542885	1	+	1	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	exon	1542123	1542885	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	intron	1542886	1543021	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	CDS	1543022	1543156	1	+	0	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	exon	1543022	1543156	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	intron	1543157	1543248	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	CDS	1543249	1543388	1	+	0	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	exon	1543249	1543388	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	intron	1543389	1543607	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	CDS	1543608	1543779	1	+	1	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	exon	1543608	1543779	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	intron	1543780	1543912	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	CDS	1543913	1543919	0.98	+	0	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	exon	1543913	1543919	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	intron	1543920	1544025	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	CDS	1544026	1544120	0.96	+	2	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	exon	1544026	1544120	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	intron	1544121	1544269	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	CDS	1544270	1544359	0.63	+	0	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	exon	1544270	1544359	.	+	.	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
Ledus.S5	AUGUSTUS	stop_codon	1544360	1544362	.	+	0	transcript_id "Ledus.S5G014300.t1"; gene_id "Ledus.S5G014300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2427.t1 is derived from g9290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18059773	18062334	.	-	.	Ledus.S2G230900
Ledus.S2	AUGUSTUS	transcript	18059773	18062334	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	stop_codon	18059770	18059772	.	-	0	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	CDS	18059773	18060513	0.97	-	0	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	exon	18059773	18060513	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	intron	18060514	18060618	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	CDS	18060619	18060732	1	-	0	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	exon	18060619	18060732	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	intron	18060733	18060872	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	CDS	18060873	18061061	1	-	0	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	exon	18060873	18061061	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	intron	18061062	18061161	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	CDS	18061162	18061272	1	-	0	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	exon	18061162	18061272	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	intron	18061273	18061369	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	CDS	18061370	18061483	0.95	-	0	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	exon	18061370	18061483	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	intron	18061484	18061605	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	CDS	18061606	18061770	1	-	0	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	exon	18061606	18061770	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	intron	18061771	18061847	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	CDS	18061848	18061928	1	-	0	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	exon	18061848	18061928	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	intron	18061929	18062002	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	CDS	18062003	18062105	1	-	1	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	exon	18062003	18062105	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	intron	18062106	18062191	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	CDS	18062192	18062334	0.98	-	0	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	exon	18062192	18062334	.	-	.	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
Ledus.S2	AUGUSTUS	start_codon	18062332	18062334	.	-	0	transcript_id "Ledus.S2G230900.t1"; gene_id "Ledus.S2G230900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12984.t1 is derived from g6794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1628694	1629584	.	+	.	Ledus.S6G004600
Ledus.S6	AUGUSTUS	transcript	1628694	1629584	.	+	.	transcript_id "Ledus.S6G004600.t1"; gene_id "Ledus.S6G004600"
Ledus.S6	AUGUSTUS	start_codon	1628694	1628696	.	+	0	transcript_id "Ledus.S6G004600.t1"; gene_id "Ledus.S6G004600"
Ledus.S6	AUGUSTUS	CDS	1628694	1629030	0.97	+	0	transcript_id "Ledus.S6G004600.t1"; gene_id "Ledus.S6G004600"
Ledus.S6	AUGUSTUS	exon	1628694	1629030	.	+	.	transcript_id "Ledus.S6G004600.t1"; gene_id "Ledus.S6G004600"
Ledus.S6	AUGUSTUS	intron	1629031	1629114	.	+	.	transcript_id "Ledus.S6G004600.t1"; gene_id "Ledus.S6G004600"
Ledus.S6	AUGUSTUS	CDS	1629115	1629584	0.41	+	2	transcript_id "Ledus.S6G004600.t1"; gene_id "Ledus.S6G004600"
Ledus.S6	AUGUSTUS	exon	1629115	1629584	.	+	.	transcript_id "Ledus.S6G004600.t1"; gene_id "Ledus.S6G004600"
Ledus.S6	AUGUSTUS	stop_codon	1629585	1629587	.	+	0	transcript_id "Ledus.S6G004600.t1"; gene_id "Ledus.S6G004600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10017.t1 is derived from g11047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11880044	11882196	.	+	.	Ledus.S3G149400
Ledus.S3	AUGUSTUS	transcript	11880044	11882196	.	+	.	transcript_id "Ledus.S3G149400.t1"; gene_id "Ledus.S3G149400"
Ledus.S3	AUGUSTUS	start_codon	11880044	11880046	.	+	0	transcript_id "Ledus.S3G149400.t1"; gene_id "Ledus.S3G149400"
Ledus.S3	AUGUSTUS	CDS	11880044	11881805	0.49	+	0	transcript_id "Ledus.S3G149400.t1"; gene_id "Ledus.S3G149400"
Ledus.S3	AUGUSTUS	exon	11880044	11881805	.	+	.	transcript_id "Ledus.S3G149400.t1"; gene_id "Ledus.S3G149400"
Ledus.S3	AUGUSTUS	intron	11881806	11881979	.	+	.	transcript_id "Ledus.S3G149400.t1"; gene_id "Ledus.S3G149400"
Ledus.S3	AUGUSTUS	CDS	11881980	11882058	0.69	+	2	transcript_id "Ledus.S3G149400.t1"; gene_id "Ledus.S3G149400"
Ledus.S3	AUGUSTUS	exon	11881980	11882058	.	+	.	transcript_id "Ledus.S3G149400.t1"; gene_id "Ledus.S3G149400"
Ledus.S3	AUGUSTUS	intron	11882059	11882195	.	+	.	transcript_id "Ledus.S3G149400.t1"; gene_id "Ledus.S3G149400"
Ledus.S3	AUGUSTUS	CDS	11882196	11882196	0.74	+	1	transcript_id "Ledus.S3G149400.t1"; gene_id "Ledus.S3G149400"
Ledus.S3	AUGUSTUS	exon	11882196	11882196	.	+	.	transcript_id "Ledus.S3G149400.t1"; gene_id "Ledus.S3G149400"
Ledus.S3	AUGUSTUS	stop_codon	11882197	11882199	.	+	0	transcript_id "Ledus.S3G149400.t1"; gene_id "Ledus.S3G149400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1242.t1 is derived from g8103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8801384	8801852	.	-	.	Ledus.S2G112400
Ledus.S2	AUGUSTUS	transcript	8801384	8801852	.	-	.	transcript_id "Ledus.S2G112400.t1"; gene_id "Ledus.S2G112400"
Ledus.S2	AUGUSTUS	stop_codon	8801381	8801383	.	-	0	transcript_id "Ledus.S2G112400.t1"; gene_id "Ledus.S2G112400"
Ledus.S2	AUGUSTUS	CDS	8801384	8801433	0.95	-	2	transcript_id "Ledus.S2G112400.t1"; gene_id "Ledus.S2G112400"
Ledus.S2	AUGUSTUS	exon	8801384	8801433	.	-	.	transcript_id "Ledus.S2G112400.t1"; gene_id "Ledus.S2G112400"
Ledus.S2	AUGUSTUS	intron	8801434	8801605	.	-	.	transcript_id "Ledus.S2G112400.t1"; gene_id "Ledus.S2G112400"
Ledus.S2	AUGUSTUS	CDS	8801606	8801852	0.35	-	0	transcript_id "Ledus.S2G112400.t1"; gene_id "Ledus.S2G112400"
Ledus.S2	AUGUSTUS	exon	8801606	8801852	.	-	.	transcript_id "Ledus.S2G112400.t1"; gene_id "Ledus.S2G112400"
Ledus.S2	AUGUSTUS	start_codon	8801850	8801852	.	-	0	transcript_id "Ledus.S2G112400.t1"; gene_id "Ledus.S2G112400"
# This transcript jg11233.t2 is derived from g4851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11233.t3 is derived from g4851.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11234.t1 is derived from g4852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2855588	2856625	.	+	.	Ledus.S4G039000
Ledus.S4	AUGUSTUS	transcript	2855588	2856625	.	+	.	transcript_id "Ledus.S4G039000.t1"; gene_id "Ledus.S4G039000"
Ledus.S4	AUGUSTUS	start_codon	2855588	2855590	.	+	0	transcript_id "Ledus.S4G039000.t1"; gene_id "Ledus.S4G039000"
Ledus.S4	AUGUSTUS	CDS	2855588	2856283	0.97	+	0	transcript_id "Ledus.S4G039000.t1"; gene_id "Ledus.S4G039000"
Ledus.S4	AUGUSTUS	exon	2855588	2856283	.	+	.	transcript_id "Ledus.S4G039000.t1"; gene_id "Ledus.S4G039000"
Ledus.S4	AUGUSTUS	intron	2856284	2856367	.	+	.	transcript_id "Ledus.S4G039000.t1"; gene_id "Ledus.S4G039000"
Ledus.S4	AUGUSTUS	CDS	2856368	2856625	1	+	0	transcript_id "Ledus.S4G039000.t1"; gene_id "Ledus.S4G039000"
Ledus.S4	AUGUSTUS	exon	2856368	2856625	.	+	.	transcript_id "Ledus.S4G039000.t1"; gene_id "Ledus.S4G039000"
Ledus.S4	AUGUSTUS	stop_codon	2856626	2856628	.	+	0	transcript_id "Ledus.S4G039000.t1"; gene_id "Ledus.S4G039000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1599.t1 is derived from g8460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11262737	11262970	.	+	.	Ledus.S2G148100
Ledus.S2	AUGUSTUS	transcript	11262737	11262970	.	+	.	transcript_id "Ledus.S2G148100.t1"; gene_id "Ledus.S2G148100"
Ledus.S2	AUGUSTUS	start_codon	11262737	11262739	.	+	0	transcript_id "Ledus.S2G148100.t1"; gene_id "Ledus.S2G148100"
Ledus.S2	AUGUSTUS	CDS	11262737	11262970	0.66	+	0	transcript_id "Ledus.S2G148100.t1"; gene_id "Ledus.S2G148100"
Ledus.S2	AUGUSTUS	exon	11262737	11262970	.	+	.	transcript_id "Ledus.S2G148100.t1"; gene_id "Ledus.S2G148100"
Ledus.S2	AUGUSTUS	stop_codon	11262971	11262973	.	+	0	transcript_id "Ledus.S2G148100.t1"; gene_id "Ledus.S2G148100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10538.t1 is derived from g11568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16012769	16013020	.	+	.	Ledus.S3G201500
Ledus.S3	AUGUSTUS	transcript	16012769	16013020	.	+	.	transcript_id "Ledus.S3G201500.t1"; gene_id "Ledus.S3G201500"
Ledus.S3	AUGUSTUS	start_codon	16012769	16012771	.	+	0	transcript_id "Ledus.S3G201500.t1"; gene_id "Ledus.S3G201500"
Ledus.S3	AUGUSTUS	CDS	16012769	16013020	1	+	0	transcript_id "Ledus.S3G201500.t1"; gene_id "Ledus.S3G201500"
Ledus.S3	AUGUSTUS	exon	16012769	16013020	.	+	.	transcript_id "Ledus.S3G201500.t1"; gene_id "Ledus.S3G201500"
Ledus.S3	AUGUSTUS	stop_codon	16013021	16013023	.	+	0	transcript_id "Ledus.S3G201500.t1"; gene_id "Ledus.S3G201500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4709.t1 is derived from g2147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19152507	19157583	.	-	.	Ledus.S1G213000
Ledus.S1	AUGUSTUS	transcript	19152507	19157583	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	stop_codon	19152504	19152506	.	-	0	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19152507	19152644	1	-	0	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19152507	19152644	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	intron	19152645	19152721	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19152722	19152858	1	-	2	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19152722	19152858	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	intron	19152859	19153015	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19153016	19153233	1	-	1	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19153016	19153233	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	intron	19153234	19153326	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19153327	19153579	1	-	2	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19153327	19153579	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	intron	19153580	19153667	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19153668	19153803	1	-	0	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19153668	19153803	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	intron	19153804	19153892	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19153893	19154137	1	-	2	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19153893	19154137	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	intron	19154138	19154216	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19154217	19154460	1	-	0	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19154217	19154460	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	intron	19154461	19154546	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19154547	19154807	0.98	-	0	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19154547	19154807	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	intron	19154808	19154923	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19154924	19155342	1	-	2	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19154924	19155342	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	intron	19155343	19155532	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19155533	19156578	0.42	-	1	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19155533	19156578	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	intron	19156579	19156703	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19156704	19156815	0.42	-	2	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19156704	19156815	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	intron	19156816	19157229	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19157230	19157380	0.91	-	0	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19157230	19157380	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	intron	19157381	19157520	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	CDS	19157521	19157583	0.87	-	0	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	exon	19157521	19157583	.	-	.	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
Ledus.S1	AUGUSTUS	start_codon	19157581	19157583	.	-	0	transcript_id "Ledus.S1G213000.t1"; gene_id "Ledus.S1G213000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1856.t1 is derived from g8719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12967030	12967569	.	+	.	Ledus.S2G173800
Ledus.S2	AUGUSTUS	transcript	12967030	12967569	.	+	.	transcript_id "Ledus.S2G173800.t1"; gene_id "Ledus.S2G173800"
Ledus.S2	AUGUSTUS	start_codon	12967030	12967032	.	+	0	transcript_id "Ledus.S2G173800.t1"; gene_id "Ledus.S2G173800"
Ledus.S2	AUGUSTUS	CDS	12967030	12967114	0.63	+	0	transcript_id "Ledus.S2G173800.t1"; gene_id "Ledus.S2G173800"
Ledus.S2	AUGUSTUS	exon	12967030	12967114	.	+	.	transcript_id "Ledus.S2G173800.t1"; gene_id "Ledus.S2G173800"
Ledus.S2	AUGUSTUS	intron	12967115	12967235	.	+	.	transcript_id "Ledus.S2G173800.t1"; gene_id "Ledus.S2G173800"
Ledus.S2	AUGUSTUS	CDS	12967236	12967265	0.59	+	2	transcript_id "Ledus.S2G173800.t1"; gene_id "Ledus.S2G173800"
Ledus.S2	AUGUSTUS	exon	12967236	12967265	.	+	.	transcript_id "Ledus.S2G173800.t1"; gene_id "Ledus.S2G173800"
Ledus.S2	AUGUSTUS	intron	12967266	12967363	.	+	.	transcript_id "Ledus.S2G173800.t1"; gene_id "Ledus.S2G173800"
Ledus.S2	AUGUSTUS	CDS	12967364	12967569	0.64	+	2	transcript_id "Ledus.S2G173800.t1"; gene_id "Ledus.S2G173800"
Ledus.S2	AUGUSTUS	exon	12967364	12967569	.	+	.	transcript_id "Ledus.S2G173800.t1"; gene_id "Ledus.S2G173800"
Ledus.S2	AUGUSTUS	stop_codon	12967570	12967572	.	+	0	transcript_id "Ledus.S2G173800.t1"; gene_id "Ledus.S2G173800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4753.t1 is derived from g2191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19614902	19616954	.	+	.	Ledus.S1G217400
Ledus.S1	AUGUSTUS	transcript	19614902	19616954	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	start_codon	19614902	19614904	.	+	0	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	CDS	19614902	19615156	0.96	+	0	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	exon	19614902	19615156	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	intron	19615157	19615272	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	CDS	19615273	19615415	0.99	+	0	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	exon	19615273	19615415	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	intron	19615416	19615558	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	CDS	19615559	19615815	0.99	+	1	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	exon	19615559	19615815	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	intron	19615816	19615896	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	CDS	19615897	19615993	1	+	2	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	exon	19615897	19615993	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	intron	19615994	19616215	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	CDS	19616216	19616354	1	+	1	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	exon	19616216	19616354	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	intron	19616355	19616473	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	CDS	19616474	19616601	1	+	0	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	exon	19616474	19616601	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	intron	19616602	19616698	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	CDS	19616699	19616954	1	+	1	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	exon	19616699	19616954	.	+	.	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
Ledus.S1	AUGUSTUS	stop_codon	19616955	19616957	.	+	0	transcript_id "Ledus.S1G217400.t1"; gene_id "Ledus.S1G217400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4910.t1 is derived from g2348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20601164	20601894	.	-	.	Ledus.S1G233100
Ledus.S1	AUGUSTUS	transcript	20601164	20601894	.	-	.	transcript_id "Ledus.S1G233100.t1"; gene_id "Ledus.S1G233100"
Ledus.S1	AUGUSTUS	stop_codon	20601161	20601163	.	-	0	transcript_id "Ledus.S1G233100.t1"; gene_id "Ledus.S1G233100"
Ledus.S1	AUGUSTUS	CDS	20601164	20601592	0.67	-	0	transcript_id "Ledus.S1G233100.t1"; gene_id "Ledus.S1G233100"
Ledus.S1	AUGUSTUS	exon	20601164	20601592	.	-	.	transcript_id "Ledus.S1G233100.t1"; gene_id "Ledus.S1G233100"
Ledus.S1	AUGUSTUS	intron	20601593	20601690	.	-	.	transcript_id "Ledus.S1G233100.t1"; gene_id "Ledus.S1G233100"
Ledus.S1	AUGUSTUS	CDS	20601691	20601894	0.67	-	0	transcript_id "Ledus.S1G233100.t1"; gene_id "Ledus.S1G233100"
Ledus.S1	AUGUSTUS	exon	20601691	20601894	.	-	.	transcript_id "Ledus.S1G233100.t1"; gene_id "Ledus.S1G233100"
Ledus.S1	AUGUSTUS	start_codon	20601892	20601894	.	-	0	transcript_id "Ledus.S1G233100.t1"; gene_id "Ledus.S1G233100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11496.t1 is derived from g5114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4928228	4930892	.	-	.	Ledus.S4G065200
Ledus.S4	AUGUSTUS	transcript	4928228	4930892	.	-	.	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	stop_codon	4928225	4928227	.	-	0	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	CDS	4928228	4928464	0.92	-	0	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	exon	4928228	4928464	.	-	.	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	intron	4928465	4928644	.	-	.	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	CDS	4928645	4928780	1	-	1	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	exon	4928645	4928780	.	-	.	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	intron	4928781	4928928	.	-	.	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	CDS	4928929	4929059	1	-	0	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	exon	4928929	4929059	.	-	.	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	intron	4929060	4929181	.	-	.	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	CDS	4929182	4929542	0.85	-	1	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	exon	4929182	4929542	.	-	.	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	intron	4929543	4929753	.	-	.	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	CDS	4929754	4929981	1	-	1	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	exon	4929754	4929981	.	-	.	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	intron	4929982	4930545	.	-	.	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	CDS	4930546	4930892	1	-	0	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	exon	4930546	4930892	.	-	.	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
Ledus.S4	AUGUSTUS	start_codon	4930890	4930892	.	-	0	transcript_id "Ledus.S4G065200.t1"; gene_id "Ledus.S4G065200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12611.t1 is derived from g6233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13226665	13227015	.	+	.	Ledus.S4G176700
Ledus.S4	AUGUSTUS	transcript	13226665	13227015	.	+	.	transcript_id "Ledus.S4G176700.t1"; gene_id "Ledus.S4G176700"
Ledus.S4	AUGUSTUS	start_codon	13226665	13226667	.	+	0	transcript_id "Ledus.S4G176700.t1"; gene_id "Ledus.S4G176700"
Ledus.S4	AUGUSTUS	CDS	13226665	13227015	0.91	+	0	transcript_id "Ledus.S4G176700.t1"; gene_id "Ledus.S4G176700"
Ledus.S4	AUGUSTUS	exon	13226665	13227015	.	+	.	transcript_id "Ledus.S4G176700.t1"; gene_id "Ledus.S4G176700"
Ledus.S4	AUGUSTUS	stop_codon	13227016	13227018	.	+	0	transcript_id "Ledus.S4G176700.t1"; gene_id "Ledus.S4G176700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7331.t1 is derived from g12002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1230464	1234827	.	+	.	Ledus.S5G010900
Ledus.S5	AUGUSTUS	transcript	1230464	1234827	.	+	.	transcript_id "Ledus.S5G010900.t1"; gene_id "Ledus.S5G010900"
Ledus.S5	AUGUSTUS	start_codon	1230464	1230466	.	+	0	transcript_id "Ledus.S5G010900.t1"; gene_id "Ledus.S5G010900"
Ledus.S5	AUGUSTUS	CDS	1230464	1230860	0.42	+	0	transcript_id "Ledus.S5G010900.t1"; gene_id "Ledus.S5G010900"
Ledus.S5	AUGUSTUS	exon	1230464	1230860	.	+	.	transcript_id "Ledus.S5G010900.t1"; gene_id "Ledus.S5G010900"
Ledus.S5	AUGUSTUS	intron	1230861	1230940	.	+	.	transcript_id "Ledus.S5G010900.t1"; gene_id "Ledus.S5G010900"
Ledus.S5	AUGUSTUS	CDS	1230941	1234827	0.9	+	2	transcript_id "Ledus.S5G010900.t1"; gene_id "Ledus.S5G010900"
Ledus.S5	AUGUSTUS	exon	1230941	1234827	.	+	.	transcript_id "Ledus.S5G010900.t1"; gene_id "Ledus.S5G010900"
Ledus.S5	AUGUSTUS	stop_codon	1234828	1234830	.	+	0	transcript_id "Ledus.S5G010900.t1"; gene_id "Ledus.S5G010900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3347.t1 is derived from g782.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7642095	7642322	.	-	.	Ledus.S1G076800
Ledus.S1	AUGUSTUS	transcript	7642095	7642322	.	-	.	transcript_id "Ledus.S1G076800.t1"; gene_id "Ledus.S1G076800"
Ledus.S1	AUGUSTUS	stop_codon	7642092	7642094	.	-	0	transcript_id "Ledus.S1G076800.t1"; gene_id "Ledus.S1G076800"
Ledus.S1	AUGUSTUS	CDS	7642095	7642322	0.71	-	0	transcript_id "Ledus.S1G076800.t1"; gene_id "Ledus.S1G076800"
Ledus.S1	AUGUSTUS	exon	7642095	7642322	.	-	.	transcript_id "Ledus.S1G076800.t1"; gene_id "Ledus.S1G076800"
Ledus.S1	AUGUSTUS	start_codon	7642320	7642322	.	-	0	transcript_id "Ledus.S1G076800.t1"; gene_id "Ledus.S1G076800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6353.t1 is derived from g3796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30702159	30703176	.	+	.	Ledus.S1G377400
Ledus.S1	AUGUSTUS	transcript	30702159	30703176	.	+	.	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	start_codon	30702159	30702161	.	+	0	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	CDS	30702159	30702546	0.54	+	0	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	exon	30702159	30702546	.	+	.	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	intron	30702547	30702632	.	+	.	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	CDS	30702633	30702742	1	+	2	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	exon	30702633	30702742	.	+	.	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	intron	30702743	30702840	.	+	.	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	CDS	30702841	30702959	1	+	0	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	exon	30702841	30702959	.	+	.	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	intron	30702960	30703037	.	+	.	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	CDS	30703038	30703176	1	+	1	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	exon	30703038	30703176	.	+	.	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
Ledus.S1	AUGUSTUS	stop_codon	30703177	30703179	.	+	0	transcript_id "Ledus.S1G377400.t1"; gene_id "Ledus.S1G377400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11695.t1 is derived from g5314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6046643	6048248	.	-	.	Ledus.S4G085100
Ledus.S4	AUGUSTUS	transcript	6046643	6048248	.	-	.	transcript_id "Ledus.S4G085100.t1"; gene_id "Ledus.S4G085100"
Ledus.S4	AUGUSTUS	stop_codon	6046640	6046642	.	-	0	transcript_id "Ledus.S4G085100.t1"; gene_id "Ledus.S4G085100"
Ledus.S4	AUGUSTUS	CDS	6046643	6047380	0.83	-	0	transcript_id "Ledus.S4G085100.t1"; gene_id "Ledus.S4G085100"
Ledus.S4	AUGUSTUS	exon	6046643	6047380	.	-	.	transcript_id "Ledus.S4G085100.t1"; gene_id "Ledus.S4G085100"
Ledus.S4	AUGUSTUS	intron	6047381	6047471	.	-	.	transcript_id "Ledus.S4G085100.t1"; gene_id "Ledus.S4G085100"
Ledus.S4	AUGUSTUS	CDS	6047472	6048248	1	-	0	transcript_id "Ledus.S4G085100.t1"; gene_id "Ledus.S4G085100"
Ledus.S4	AUGUSTUS	exon	6047472	6048248	.	-	.	transcript_id "Ledus.S4G085100.t1"; gene_id "Ledus.S4G085100"
Ledus.S4	AUGUSTUS	start_codon	6048246	6048248	.	-	0	transcript_id "Ledus.S4G085100.t1"; gene_id "Ledus.S4G085100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2056.t1 is derived from g8919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14372483	14377498	.	-	.	Ledus.S2G193800
Ledus.S2	AUGUSTUS	transcript	14375683	14377498	.	-	.	transcript_id "Ledus.S2G193800.t1"; gene_id "Ledus.S2G193800"
Ledus.S2	AUGUSTUS	stop_codon	14375680	14375682	.	-	0	transcript_id "Ledus.S2G193800.t1"; gene_id "Ledus.S2G193800"
Ledus.S2	AUGUSTUS	CDS	14375683	14375712	0.98	-	0	transcript_id "Ledus.S2G193800.t1"; gene_id "Ledus.S2G193800"
Ledus.S2	AUGUSTUS	exon	14375683	14375712	.	-	.	transcript_id "Ledus.S2G193800.t1"; gene_id "Ledus.S2G193800"
Ledus.S2	AUGUSTUS	intron	14375713	14375803	.	-	.	transcript_id "Ledus.S2G193800.t1"; gene_id "Ledus.S2G193800"
Ledus.S2	AUGUSTUS	CDS	14375804	14377498	0.6	-	0	transcript_id "Ledus.S2G193800.t1"; gene_id "Ledus.S2G193800"
Ledus.S2	AUGUSTUS	exon	14375804	14377498	.	-	.	transcript_id "Ledus.S2G193800.t1"; gene_id "Ledus.S2G193800"
Ledus.S2	AUGUSTUS	start_codon	14377496	14377498	.	-	0	transcript_id "Ledus.S2G193800.t1"; gene_id "Ledus.S2G193800"
Ledus.S2	AUGUSTUS	transcript	14372483	14377498	.	-	.	transcript_id "Ledus.S2G193800.t2"; gene_id "Ledus.S2G193800"
Ledus.S2	AUGUSTUS	stop_codon	14372480	14372482	.	-	0	transcript_id "Ledus.S2G193800.t2"; gene_id "Ledus.S2G193800"
Ledus.S2	AUGUSTUS	CDS	14372483	14377498	0.44	-	0	transcript_id "Ledus.S2G193800.t2"; gene_id "Ledus.S2G193800"
Ledus.S2	AUGUSTUS	exon	14372483	14377498	.	-	.	transcript_id "Ledus.S2G193800.t2"; gene_id "Ledus.S2G193800"
Ledus.S2	AUGUSTUS	start_codon	14377496	14377498	.	-	0	transcript_id "Ledus.S2G193800.t2"; gene_id "Ledus.S2G193800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7558.t1 is derived from g12229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4052417	4053958	.	+	.	Ledus.S5G033600
Ledus.S5	AUGUSTUS	transcript	4052417	4053958	.	+	.	transcript_id "Ledus.S5G033600.t1"; gene_id "Ledus.S5G033600"
Ledus.S5	AUGUSTUS	start_codon	4052417	4052419	.	+	0	transcript_id "Ledus.S5G033600.t1"; gene_id "Ledus.S5G033600"
Ledus.S5	AUGUSTUS	CDS	4052417	4053958	0.99	+	0	transcript_id "Ledus.S5G033600.t1"; gene_id "Ledus.S5G033600"
Ledus.S5	AUGUSTUS	exon	4052417	4053958	.	+	.	transcript_id "Ledus.S5G033600.t1"; gene_id "Ledus.S5G033600"
Ledus.S5	AUGUSTUS	stop_codon	4053959	4053961	.	+	0	transcript_id "Ledus.S5G033600.t1"; gene_id "Ledus.S5G033600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3354.t1 is derived from g789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7773804	7775582	.	+	.	Ledus.S1G077500
Ledus.S1	AUGUSTUS	transcript	7773804	7775582	.	+	.	transcript_id "Ledus.S1G077500.t1"; gene_id "Ledus.S1G077500"
Ledus.S1	AUGUSTUS	start_codon	7773804	7773806	.	+	0	transcript_id "Ledus.S1G077500.t1"; gene_id "Ledus.S1G077500"
Ledus.S1	AUGUSTUS	CDS	7773804	7775582	1	+	0	transcript_id "Ledus.S1G077500.t1"; gene_id "Ledus.S1G077500"
Ledus.S1	AUGUSTUS	exon	7773804	7775582	.	+	.	transcript_id "Ledus.S1G077500.t1"; gene_id "Ledus.S1G077500"
Ledus.S1	AUGUSTUS	stop_codon	7775583	7775585	.	+	0	transcript_id "Ledus.S1G077500.t1"; gene_id "Ledus.S1G077500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8864.t1 is derived from g9894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2587421	2593673	.	+	.	Ledus.S3G034100
Ledus.S3	AUGUSTUS	transcript	2587421	2593673	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	start_codon	2587421	2587423	.	+	0	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2587421	2587571	0.56	+	0	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2587421	2587571	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2587572	2587713	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2587714	2587790	1	+	2	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2587714	2587790	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2587791	2587879	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2587880	2587964	1	+	0	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2587880	2587964	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2587965	2588227	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2588228	2588397	0.68	+	2	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2588228	2588397	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2588398	2588498	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2588499	2590518	0.3	+	0	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2588499	2590518	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2590519	2590634	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2590635	2590676	0.87	+	2	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2590635	2590676	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2590677	2590769	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2590770	2590954	1	+	2	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2590770	2590954	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2590955	2591106	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2591107	2591264	1	+	0	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2591107	2591264	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2591265	2591438	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2591439	2592204	0.52	+	1	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2591439	2592204	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2592205	2592298	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2592299	2592339	0.31	+	0	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2592299	2592339	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2592340	2592422	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2592423	2592471	0.65	+	1	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2592423	2592471	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2592472	2592630	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2592631	2592777	1	+	0	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2592631	2592777	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2592778	2592865	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2592866	2593183	0.87	+	0	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2592866	2593183	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2593184	2593284	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2593285	2593344	1	+	0	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2593285	2593344	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	intron	2593345	2593484	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	CDS	2593485	2593673	0.77	+	0	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	exon	2593485	2593673	.	+	.	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
Ledus.S3	AUGUSTUS	stop_codon	2593674	2593676	.	+	0	transcript_id "Ledus.S3G034100.t1"; gene_id "Ledus.S3G034100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7140.t1 is derived from g6671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1729300	1732816	.	+	.	Ledus.C7G020100
Ledus.C7	AUGUSTUS	transcript	1729300	1732816	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	start_codon	1729300	1729302	.	+	0	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	CDS	1729300	1729540	1	+	0	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	exon	1729300	1729540	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	intron	1729541	1730129	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	CDS	1730130	1730174	1	+	2	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	exon	1730130	1730174	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	intron	1730175	1730268	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	CDS	1730269	1730277	1	+	2	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	exon	1730269	1730277	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	intron	1730278	1730376	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	CDS	1730377	1731227	1	+	2	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	exon	1730377	1731227	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	intron	1731228	1731328	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	CDS	1731329	1731490	1	+	0	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	exon	1731329	1731490	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	intron	1731491	1731561	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	CDS	1731562	1731788	0.99	+	0	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	exon	1731562	1731788	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	intron	1731789	1731870	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	CDS	1731871	1731961	1	+	1	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	exon	1731871	1731961	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	intron	1731962	1732046	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	CDS	1732047	1732228	1	+	0	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	exon	1732047	1732228	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	intron	1732229	1732300	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	CDS	1732301	1732369	0.4	+	1	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	exon	1732301	1732369	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	intron	1732370	1732494	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	CDS	1732495	1732816	0.15	+	1	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	exon	1732495	1732816	.	+	.	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
Ledus.C7	AUGUSTUS	stop_codon	1732817	1732819	.	+	0	transcript_id "Ledus.C7G020100.t1"; gene_id "Ledus.C7G020100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg997.t1 is derived from g7858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6542326	6547332	.	+	.	Ledus.S2G087900
Ledus.S2	AUGUSTUS	transcript	6542326	6547332	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	start_codon	6542326	6542328	.	+	0	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	CDS	6542326	6543019	0.55	+	0	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	exon	6542326	6543019	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	intron	6543020	6543091	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	CDS	6543092	6543550	0.76	+	2	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	exon	6543092	6543550	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	intron	6543551	6543637	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	CDS	6543638	6543720	1	+	2	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	exon	6543638	6543720	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	intron	6543721	6543813	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	CDS	6543814	6544737	1	+	0	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	exon	6543814	6544737	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	intron	6544738	6545073	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	CDS	6545074	6545850	1	+	0	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	exon	6545074	6545850	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	intron	6545851	6545932	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	CDS	6545933	6546075	0.53	+	0	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	exon	6545933	6546075	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	intron	6546076	6546230	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	CDS	6546231	6547332	0.5	+	1	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	exon	6546231	6547332	.	+	.	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
Ledus.S2	AUGUSTUS	stop_codon	6547333	6547335	.	+	0	transcript_id "Ledus.S2G087900.t1"; gene_id "Ledus.S2G087900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4308.t1 is derived from g1744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16136449	16137741	.	-	.	Ledus.S1G172900
Ledus.S1	AUGUSTUS	transcript	16136449	16137741	.	-	.	transcript_id "Ledus.S1G172900.t1"; gene_id "Ledus.S1G172900"
Ledus.S1	AUGUSTUS	stop_codon	16136446	16136448	.	-	0	transcript_id "Ledus.S1G172900.t1"; gene_id "Ledus.S1G172900"
Ledus.S1	AUGUSTUS	CDS	16136449	16137533	0.96	-	2	transcript_id "Ledus.S1G172900.t1"; gene_id "Ledus.S1G172900"
Ledus.S1	AUGUSTUS	exon	16136449	16137533	.	-	.	transcript_id "Ledus.S1G172900.t1"; gene_id "Ledus.S1G172900"
Ledus.S1	AUGUSTUS	intron	16137534	16137704	.	-	.	transcript_id "Ledus.S1G172900.t1"; gene_id "Ledus.S1G172900"
Ledus.S1	AUGUSTUS	CDS	16137705	16137741	0.53	-	0	transcript_id "Ledus.S1G172900.t1"; gene_id "Ledus.S1G172900"
Ledus.S1	AUGUSTUS	exon	16137705	16137741	.	-	.	transcript_id "Ledus.S1G172900.t1"; gene_id "Ledus.S1G172900"
Ledus.S1	AUGUSTUS	start_codon	16137739	16137741	.	-	0	transcript_id "Ledus.S1G172900.t1"; gene_id "Ledus.S1G172900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2716.t1 is derived from g149.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2498334	2504562	.	-	.	Ledus.S1G013700
Ledus.S1	AUGUSTUS	transcript	2498334	2504562	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	stop_codon	2498331	2498333	.	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2498334	2498396	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2498334	2498396	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2498397	2498478	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2498479	2498565	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2498479	2498565	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2498566	2498643	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2498644	2498715	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2498644	2498715	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2498716	2498810	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2498811	2498903	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2498811	2498903	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2498904	2499032	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2499033	2499149	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2499033	2499149	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2499150	2499338	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2499339	2499431	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2499339	2499431	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2499432	2499505	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2499506	2499593	1	-	1	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2499506	2499593	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2499594	2499707	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2499708	2499763	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2499708	2499763	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2499764	2499854	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2499855	2500043	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2499855	2500043	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2500044	2500144	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2500145	2500235	1	-	1	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2500145	2500235	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2500236	2500319	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2500320	2500432	0.98	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2500320	2500432	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2500433	2500561	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2500562	2500645	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2500562	2500645	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2500646	2500805	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2500806	2500931	0.98	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2500806	2500931	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2500932	2501068	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2501069	2501185	0.76	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2501069	2501185	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2501186	2501410	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2501411	2501564	0.96	-	1	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2501411	2501564	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2501565	2501654	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2501655	2501806	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2501655	2501806	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2501807	2501945	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2501946	2502056	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2501946	2502056	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2502057	2502135	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2502136	2502369	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2502136	2502369	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2502370	2502535	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2502536	2502670	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2502536	2502670	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2502671	2502841	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2502842	2502937	1	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2502842	2502937	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2502938	2503037	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2503038	2503110	1	-	1	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2503038	2503110	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2503111	2503219	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2503220	2503383	0.99	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2503220	2503383	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2503384	2503478	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2503479	2503559	0.99	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2503479	2503559	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2503560	2503718	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2503719	2503802	0.99	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2503719	2503802	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2503803	2503908	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2503909	2504018	1	-	2	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2503909	2504018	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2504019	2504189	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2504190	2504301	0.98	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2504190	2504301	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2504302	2504427	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2504428	2504562	0.82	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2504428	2504562	.	-	.	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	start_codon	2504560	2504562	.	-	0	transcript_id "Ledus.S1G013700.t1"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	transcript	2498334	2504562	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	stop_codon	2498331	2498333	.	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2498334	2498396	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2498334	2498396	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2498397	2498478	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2498479	2498565	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2498479	2498565	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2498566	2498643	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2498644	2498715	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2498644	2498715	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2498716	2498810	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2498811	2498903	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2498811	2498903	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2498904	2499032	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2499033	2499149	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2499033	2499149	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2499150	2499338	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2499339	2499431	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2499339	2499431	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2499432	2499505	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2499506	2499593	1	-	1	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2499506	2499593	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2499594	2499707	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2499708	2499763	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2499708	2499763	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2499764	2499854	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2499855	2500043	0.98	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2499855	2500043	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2500044	2500144	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2500145	2500235	0.99	-	1	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2500145	2500235	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2500236	2500319	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2500320	2500369	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2500320	2500369	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2500370	2500561	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2500562	2500645	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2500562	2500645	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2500646	2500805	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2500806	2500931	0.98	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2500806	2500931	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2500932	2501068	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2501069	2501185	0.74	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2501069	2501185	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2501186	2501410	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2501411	2501564	0.96	-	1	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2501411	2501564	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2501565	2501654	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2501655	2501806	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2501655	2501806	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2501807	2501945	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2501946	2502056	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2501946	2502056	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2502057	2502135	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2502136	2502369	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2502136	2502369	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2502370	2502535	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2502536	2502670	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2502536	2502670	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2502671	2502841	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2502842	2502937	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2502842	2502937	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2502938	2503037	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2503038	2503110	1	-	1	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2503038	2503110	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2503111	2503219	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2503220	2503383	0.98	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2503220	2503383	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2503384	2503478	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2503479	2503559	0.96	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2503479	2503559	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2503560	2503718	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2503719	2503802	0.94	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2503719	2503802	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2503803	2503908	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2503909	2504018	1	-	2	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2503909	2504018	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2504019	2504189	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2504190	2504301	1	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2504190	2504301	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	intron	2504302	2504427	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	CDS	2504428	2504562	0.8	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	exon	2504428	2504562	.	-	.	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
Ledus.S1	AUGUSTUS	start_codon	2504560	2504562	.	-	0	transcript_id "Ledus.S1G013700.t2"; gene_id "Ledus.S1G013700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2334.t1 is derived from g9197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17227542	17229812	.	-	.	Ledus.S2G221600
Ledus.S2	AUGUSTUS	transcript	17227542	17229812	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	stop_codon	17227539	17227541	.	-	0	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	CDS	17227542	17228006	0.9	-	0	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	exon	17227542	17228006	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	intron	17228007	17228096	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	CDS	17228097	17228157	1	-	1	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	exon	17228097	17228157	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	intron	17228158	17228245	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	CDS	17228246	17228355	0.99	-	0	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	exon	17228246	17228355	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	intron	17228356	17228470	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	CDS	17228471	17228530	1	-	0	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	exon	17228471	17228530	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	intron	17228531	17228625	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	CDS	17228626	17228704	1	-	1	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	exon	17228626	17228704	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	intron	17228705	17228828	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	CDS	17228829	17228899	1	-	0	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	exon	17228829	17228899	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	intron	17228900	17229005	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	CDS	17229006	17229062	0.99	-	0	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	exon	17229006	17229062	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	intron	17229063	17229165	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	CDS	17229166	17229343	0.99	-	1	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	exon	17229166	17229343	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	intron	17229344	17229423	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	CDS	17229424	17229588	1	-	1	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	exon	17229424	17229588	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	intron	17229589	17229678	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	CDS	17229679	17229812	1	-	0	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	exon	17229679	17229812	.	-	.	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
Ledus.S2	AUGUSTUS	start_codon	17229810	17229812	.	-	0	transcript_id "Ledus.S2G221600.t1"; gene_id "Ledus.S2G221600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg162.t1 is derived from g7023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	413275	414745	.	+	.	Ledus.S2G004400
Ledus.S2	AUGUSTUS	transcript	413275	414745	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	start_codon	413275	413277	.	+	0	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	CDS	413275	413358	1	+	0	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	exon	413275	413358	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	intron	413359	413545	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	CDS	413546	413610	1	+	0	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	exon	413546	413610	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	intron	413611	413694	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	CDS	413695	413770	1	+	1	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	exon	413695	413770	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	intron	413771	413958	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	CDS	413959	414107	1	+	0	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	exon	413959	414107	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	intron	414108	414200	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	CDS	414201	414296	1	+	1	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	exon	414201	414296	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	intron	414297	414368	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	CDS	414369	414468	1	+	1	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	exon	414369	414468	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	intron	414469	414571	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	CDS	414572	414745	0.96	+	0	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	exon	414572	414745	.	+	.	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
Ledus.S2	AUGUSTUS	stop_codon	414746	414748	.	+	0	transcript_id "Ledus.S2G004400.t1"; gene_id "Ledus.S2G004400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4525.t1 is derived from g1962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17514197	17516510	.	+	.	Ledus.S1G194600
Ledus.S1	AUGUSTUS	transcript	17514197	17516510	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	start_codon	17514197	17514199	.	+	0	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	CDS	17514197	17514200	1	+	0	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	exon	17514197	17514200	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	intron	17514201	17514531	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	CDS	17514532	17514721	1	+	2	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	exon	17514532	17514721	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	intron	17514722	17514838	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	CDS	17514839	17514944	1	+	1	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	exon	17514839	17514944	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	intron	17514945	17515103	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	CDS	17515104	17515349	0.74	+	0	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	exon	17515104	17515349	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	intron	17515350	17515451	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	CDS	17515452	17515562	0.97	+	0	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	exon	17515452	17515562	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	intron	17515563	17515739	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	CDS	17515740	17515898	0.97	+	0	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	exon	17515740	17515898	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	intron	17515899	17516013	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	CDS	17516014	17516157	0.98	+	0	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	exon	17516014	17516157	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	intron	17516158	17516321	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	CDS	17516322	17516510	1	+	0	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	exon	17516322	17516510	.	+	.	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
Ledus.S1	AUGUSTUS	stop_codon	17516511	17516513	.	+	0	transcript_id "Ledus.S1G194600.t1"; gene_id "Ledus.S1G194600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5007.t1 is derived from g2445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21109143	21109873	.	+	.	Ledus.S1G242800
Ledus.S1	AUGUSTUS	transcript	21109143	21109873	.	+	.	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	start_codon	21109143	21109145	.	+	0	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	CDS	21109143	21109154	1	+	0	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	exon	21109143	21109154	.	+	.	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	intron	21109155	21109449	.	+	.	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	CDS	21109450	21109567	1	+	0	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	exon	21109450	21109567	.	+	.	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	intron	21109568	21109672	.	+	.	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	CDS	21109673	21109735	0.9	+	2	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	exon	21109673	21109735	.	+	.	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	intron	21109736	21109808	.	+	.	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	CDS	21109809	21109873	0.99	+	2	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	exon	21109809	21109873	.	+	.	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
Ledus.S1	AUGUSTUS	stop_codon	21109874	21109876	.	+	0	transcript_id "Ledus.S1G242800.t1"; gene_id "Ledus.S1G242800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5556.t1 is derived from g2995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25110914	25112342	.	-	.	Ledus.S1G297700
Ledus.S1	AUGUSTUS	transcript	25110914	25112342	.	-	.	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	stop_codon	25110911	25110913	.	-	0	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	CDS	25110914	25111341	0.87	-	2	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	exon	25110914	25111341	.	-	.	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	intron	25111342	25111438	.	-	.	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	CDS	25111439	25111523	1	-	0	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	exon	25111439	25111523	.	-	.	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	intron	25111524	25111641	.	-	.	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	CDS	25111642	25111731	1	-	0	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	exon	25111642	25111731	.	-	.	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	intron	25111732	25111852	.	-	.	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	CDS	25111853	25111977	1	-	2	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	exon	25111853	25111977	.	-	.	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	intron	25111978	25112221	.	-	.	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	CDS	25112222	25112342	0.75	-	0	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	exon	25112222	25112342	.	-	.	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
Ledus.S1	AUGUSTUS	start_codon	25112340	25112342	.	-	0	transcript_id "Ledus.S1G297700.t1"; gene_id "Ledus.S1G297700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8237.t1 is derived from g12908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10078892	10082563	.	-	.	Ledus.S5G101500
Ledus.S5	AUGUSTUS	transcript	10078892	10082563	.	-	.	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	stop_codon	10078889	10078891	.	-	0	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	CDS	10078892	10081046	0.85	-	1	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	exon	10078892	10081046	.	-	.	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	intron	10081047	10081186	.	-	.	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	CDS	10081187	10081368	1	-	0	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	exon	10081187	10081368	.	-	.	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	intron	10081369	10081677	.	-	.	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	CDS	10081678	10081757	1	-	2	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	exon	10081678	10081757	.	-	.	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	intron	10081758	10081978	.	-	.	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	CDS	10081979	10082090	1	-	0	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	exon	10081979	10082090	.	-	.	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	intron	10082091	10082167	.	-	.	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	CDS	10082168	10082241	1	-	2	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	exon	10082168	10082241	.	-	.	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	intron	10082242	10082325	.	-	.	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	CDS	10082326	10082563	0.88	-	0	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	exon	10082326	10082563	.	-	.	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
Ledus.S5	AUGUSTUS	start_codon	10082561	10082563	.	-	0	transcript_id "Ledus.S5G101500.t1"; gene_id "Ledus.S5G101500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7587.t1 is derived from g12258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4222486	4222788	.	+	.	Ledus.S5G036500
Ledus.S5	AUGUSTUS	transcript	4222486	4222788	.	+	.	transcript_id "Ledus.S5G036500.t1"; gene_id "Ledus.S5G036500"
Ledus.S5	AUGUSTUS	start_codon	4222486	4222488	.	+	0	transcript_id "Ledus.S5G036500.t1"; gene_id "Ledus.S5G036500"
Ledus.S5	AUGUSTUS	CDS	4222486	4222788	0.84	+	0	transcript_id "Ledus.S5G036500.t1"; gene_id "Ledus.S5G036500"
Ledus.S5	AUGUSTUS	exon	4222486	4222788	.	+	.	transcript_id "Ledus.S5G036500.t1"; gene_id "Ledus.S5G036500"
Ledus.S5	AUGUSTUS	stop_codon	4222789	4222791	.	+	0	transcript_id "Ledus.S5G036500.t1"; gene_id "Ledus.S5G036500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5776.t1 is derived from g3218.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26702919	26704057	.	-	.	Ledus.S1G319700
Ledus.S1	AUGUSTUS	transcript	26702919	26704057	.	-	.	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	stop_codon	26702916	26702918	.	-	0	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	CDS	26702919	26703034	0.64	-	2	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	exon	26702919	26703034	.	-	.	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	intron	26703035	26703165	.	-	.	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	CDS	26703166	26703191	0.76	-	1	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	exon	26703166	26703191	.	-	.	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	intron	26703192	26703305	.	-	.	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	CDS	26703306	26703414	0.77	-	2	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	exon	26703306	26703414	.	-	.	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	intron	26703415	26703501	.	-	.	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	CDS	26703502	26703670	0.92	-	0	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	exon	26703502	26703670	.	-	.	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	intron	26703671	26703748	.	-	.	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	CDS	26703749	26704057	0.81	-	0	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	exon	26703749	26704057	.	-	.	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
Ledus.S1	AUGUSTUS	start_codon	26704055	26704057	.	-	0	transcript_id "Ledus.S1G319700.t1"; gene_id "Ledus.S1G319700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg185.t1 is derived from g7046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	612279	613058	.	+	.	Ledus.S2G006700
Ledus.S2	AUGUSTUS	transcript	612279	613058	.	+	.	transcript_id "Ledus.S2G006700.t1"; gene_id "Ledus.S2G006700"
Ledus.S2	AUGUSTUS	start_codon	612279	612281	.	+	0	transcript_id "Ledus.S2G006700.t1"; gene_id "Ledus.S2G006700"
Ledus.S2	AUGUSTUS	CDS	612279	613058	0.55	+	0	transcript_id "Ledus.S2G006700.t1"; gene_id "Ledus.S2G006700"
Ledus.S2	AUGUSTUS	exon	612279	613058	.	+	.	transcript_id "Ledus.S2G006700.t1"; gene_id "Ledus.S2G006700"
Ledus.S2	AUGUSTUS	stop_codon	613059	613061	.	+	0	transcript_id "Ledus.S2G006700.t1"; gene_id "Ledus.S2G006700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12437.t1 is derived from g6058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12015114	12016163	.	+	.	Ledus.S4G159300
Ledus.S4	AUGUSTUS	transcript	12015114	12016163	.	+	.	transcript_id "Ledus.S4G159300.t1"; gene_id "Ledus.S4G159300"
Ledus.S4	AUGUSTUS	start_codon	12015114	12015116	.	+	0	transcript_id "Ledus.S4G159300.t1"; gene_id "Ledus.S4G159300"
Ledus.S4	AUGUSTUS	CDS	12015114	12015455	0.56	+	0	transcript_id "Ledus.S4G159300.t1"; gene_id "Ledus.S4G159300"
Ledus.S4	AUGUSTUS	exon	12015114	12015455	.	+	.	transcript_id "Ledus.S4G159300.t1"; gene_id "Ledus.S4G159300"
Ledus.S4	AUGUSTUS	intron	12015456	12015551	.	+	.	transcript_id "Ledus.S4G159300.t1"; gene_id "Ledus.S4G159300"
Ledus.S4	AUGUSTUS	CDS	12015552	12016163	1	+	0	transcript_id "Ledus.S4G159300.t1"; gene_id "Ledus.S4G159300"
Ledus.S4	AUGUSTUS	exon	12015552	12016163	.	+	.	transcript_id "Ledus.S4G159300.t1"; gene_id "Ledus.S4G159300"
Ledus.S4	AUGUSTUS	stop_codon	12016164	12016166	.	+	0	transcript_id "Ledus.S4G159300.t1"; gene_id "Ledus.S4G159300"
# This transcript jg5450.t2 is derived from g2889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5451.t1 is derived from g2890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24362078	24372214	.	+	.	Ledus.S1G287200
Ledus.S1	AUGUSTUS	transcript	24362078	24372214	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	start_codon	24362078	24362080	.	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24362078	24362428	0.8	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24362078	24362428	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24362429	24362930	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24362931	24363243	0.93	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24362931	24363243	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24363244	24363392	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24363393	24363835	0.98	+	2	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24363393	24363835	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24363836	24364112	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24364113	24364244	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24364113	24364244	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24364245	24364336	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24364337	24364435	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24364337	24364435	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24364436	24364684	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24364685	24364755	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24364685	24364755	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24364756	24364841	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24364842	24364935	0.92	+	1	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24364842	24364935	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24364936	24365038	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24365039	24365131	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24365039	24365131	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24365132	24365211	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24365212	24365357	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24365212	24365357	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24365358	24365696	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24365697	24365856	1	+	1	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24365697	24365856	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24365857	24365955	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24365956	24366066	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24365956	24366066	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24366067	24366308	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24366309	24366524	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24366309	24366524	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24366525	24366619	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24366620	24366777	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24366620	24366777	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24366778	24366868	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24366869	24366998	1	+	1	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24366869	24366998	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24366999	24367140	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24367141	24367199	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24367141	24367199	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24367200	24367400	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24367401	24367506	1	+	1	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24367401	24367506	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24367507	24367613	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24367614	24367710	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24367614	24367710	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24367711	24367828	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24367829	24367944	1	+	2	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24367829	24367944	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24367945	24368111	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24368112	24368309	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24368112	24368309	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24368310	24368404	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24368405	24368515	0.95	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24368405	24368515	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24368516	24368632	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24368633	24368872	0.95	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24368633	24368872	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24368873	24369217	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24369218	24369316	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24369218	24369316	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24369317	24369480	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24369481	24369576	0.95	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24369481	24369576	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24369577	24369690	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24369691	24369888	0.95	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24369691	24369888	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24369889	24370014	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24370015	24370089	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24370015	24370089	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24370090	24370360	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24370361	24370489	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24370361	24370489	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24370490	24370581	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24370582	24370680	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24370582	24370680	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24370681	24370805	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24370806	24370948	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24370806	24370948	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24370949	24371133	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24371134	24371227	1	+	1	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24371134	24371227	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24371228	24371319	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24371320	24371558	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24371320	24371558	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24371559	24371675	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24371676	24371754	1	+	1	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24371676	24371754	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24371755	24371843	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24371844	24371927	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24371844	24371927	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	intron	24371928	24372055	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	CDS	24372056	24372214	1	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	exon	24372056	24372214	.	+	.	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
Ledus.S1	AUGUSTUS	stop_codon	24372215	24372217	.	+	0	transcript_id "Ledus.S1G287200.t1"; gene_id "Ledus.S1G287200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8131.t1 is derived from g12802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9299809	9300520	.	+	.	Ledus.S5G090900
Ledus.S5	AUGUSTUS	transcript	9299809	9300520	.	+	.	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	start_codon	9299809	9299811	.	+	0	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	CDS	9299809	9299880	0.8	+	0	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	exon	9299809	9299880	.	+	.	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	intron	9299881	9299938	.	+	.	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	CDS	9299939	9300011	0.76	+	0	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	exon	9299939	9300011	.	+	.	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	intron	9300012	9300240	.	+	.	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	CDS	9300241	9300328	1	+	2	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	exon	9300241	9300328	.	+	.	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	intron	9300329	9300411	.	+	.	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	CDS	9300412	9300520	1	+	1	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	exon	9300412	9300520	.	+	.	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
Ledus.S5	AUGUSTUS	stop_codon	9300521	9300523	.	+	0	transcript_id "Ledus.S5G090900.t1"; gene_id "Ledus.S5G090900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6608.t1 is derived from g4051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32633845	32635382	.	-	.	Ledus.S1G402900
Ledus.S1	AUGUSTUS	transcript	32633845	32635382	.	-	.	transcript_id "Ledus.S1G402900.t1"; gene_id "Ledus.S1G402900"
Ledus.S1	AUGUSTUS	stop_codon	32633842	32633844	.	-	0	transcript_id "Ledus.S1G402900.t1"; gene_id "Ledus.S1G402900"
Ledus.S1	AUGUSTUS	CDS	32633845	32634735	1	-	0	transcript_id "Ledus.S1G402900.t1"; gene_id "Ledus.S1G402900"
Ledus.S1	AUGUSTUS	exon	32633845	32634735	.	-	.	transcript_id "Ledus.S1G402900.t1"; gene_id "Ledus.S1G402900"
Ledus.S1	AUGUSTUS	intron	32634736	32634825	.	-	.	transcript_id "Ledus.S1G402900.t1"; gene_id "Ledus.S1G402900"
Ledus.S1	AUGUSTUS	CDS	32634826	32635075	1	-	1	transcript_id "Ledus.S1G402900.t1"; gene_id "Ledus.S1G402900"
Ledus.S1	AUGUSTUS	exon	32634826	32635075	.	-	.	transcript_id "Ledus.S1G402900.t1"; gene_id "Ledus.S1G402900"
Ledus.S1	AUGUSTUS	intron	32635076	32635164	.	-	.	transcript_id "Ledus.S1G402900.t1"; gene_id "Ledus.S1G402900"
Ledus.S1	AUGUSTUS	CDS	32635165	32635382	0.84	-	0	transcript_id "Ledus.S1G402900.t1"; gene_id "Ledus.S1G402900"
Ledus.S1	AUGUSTUS	exon	32635165	32635382	.	-	.	transcript_id "Ledus.S1G402900.t1"; gene_id "Ledus.S1G402900"
Ledus.S1	AUGUSTUS	start_codon	32635380	32635382	.	-	0	transcript_id "Ledus.S1G402900.t1"; gene_id "Ledus.S1G402900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4827.t1 is derived from g2265.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20004485	20005363	.	-	.	Ledus.S1G224800
Ledus.S1	AUGUSTUS	transcript	20004485	20005363	.	-	.	transcript_id "Ledus.S1G224800.t1"; gene_id "Ledus.S1G224800"
Ledus.S1	AUGUSTUS	stop_codon	20004482	20004484	.	-	0	transcript_id "Ledus.S1G224800.t1"; gene_id "Ledus.S1G224800"
Ledus.S1	AUGUSTUS	CDS	20004485	20005363	1	-	0	transcript_id "Ledus.S1G224800.t1"; gene_id "Ledus.S1G224800"
Ledus.S1	AUGUSTUS	exon	20004485	20005363	.	-	.	transcript_id "Ledus.S1G224800.t1"; gene_id "Ledus.S1G224800"
Ledus.S1	AUGUSTUS	start_codon	20005361	20005363	.	-	0	transcript_id "Ledus.S1G224800.t1"; gene_id "Ledus.S1G224800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4580.t1 is derived from g2017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17871662	17871916	.	-	.	Ledus.S1G200100
Ledus.S1	AUGUSTUS	transcript	17871662	17871916	.	-	.	transcript_id "Ledus.S1G200100.t1"; gene_id "Ledus.S1G200100"
Ledus.S1	AUGUSTUS	stop_codon	17871659	17871661	.	-	0	transcript_id "Ledus.S1G200100.t1"; gene_id "Ledus.S1G200100"
Ledus.S1	AUGUSTUS	CDS	17871662	17871916	0.62	-	0	transcript_id "Ledus.S1G200100.t1"; gene_id "Ledus.S1G200100"
Ledus.S1	AUGUSTUS	exon	17871662	17871916	.	-	.	transcript_id "Ledus.S1G200100.t1"; gene_id "Ledus.S1G200100"
Ledus.S1	AUGUSTUS	start_codon	17871914	17871916	.	-	0	transcript_id "Ledus.S1G200100.t1"; gene_id "Ledus.S1G200100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9779.t1 is derived from g10809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9757281	9758571	.	-	.	Ledus.S3G125600
Ledus.S3	AUGUSTUS	transcript	9757281	9758571	.	-	.	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	stop_codon	9757278	9757280	.	-	0	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	CDS	9757281	9757436	0.84	-	0	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	exon	9757281	9757436	.	-	.	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	intron	9757437	9757849	.	-	.	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	CDS	9757850	9758034	1	-	2	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	exon	9757850	9758034	.	-	.	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	intron	9758035	9758123	.	-	.	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	CDS	9758124	9758230	1	-	1	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	exon	9758124	9758230	.	-	.	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	intron	9758231	9758320	.	-	.	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	CDS	9758321	9758571	0.96	-	0	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	exon	9758321	9758571	.	-	.	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
Ledus.S3	AUGUSTUS	start_codon	9758569	9758571	.	-	0	transcript_id "Ledus.S3G125600.t1"; gene_id "Ledus.S3G125600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8630.t1 is derived from g9660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	912842	920744	.	-	.	Ledus.S3G010700
Ledus.S3	AUGUSTUS	transcript	912842	920744	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	stop_codon	912839	912841	.	-	0	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	CDS	912842	912915	1	-	2	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	exon	912842	912915	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	intron	912916	913013	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	CDS	913014	913105	1	-	1	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	exon	913014	913105	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	intron	913106	913191	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	CDS	913192	913295	0.86	-	0	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	exon	913192	913295	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	intron	913296	913411	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	CDS	913412	913580	0.76	-	1	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	exon	913412	913580	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	intron	913581	913696	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	CDS	913697	914135	0.18	-	2	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	exon	913697	914135	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	intron	914136	914241	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	CDS	914242	916145	0.37	-	1	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	exon	914242	916145	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	intron	916146	916240	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	CDS	916241	916617	0.98	-	0	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	exon	916241	916617	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	intron	916618	916757	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	CDS	916758	918257	1	-	0	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	exon	916758	918257	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	intron	918258	918378	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	CDS	918379	920086	1	-	1	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	exon	918379	920086	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	intron	920087	920424	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	CDS	920425	920744	1	-	0	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	exon	920425	920744	.	-	.	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
Ledus.S3	AUGUSTUS	start_codon	920742	920744	.	-	0	transcript_id "Ledus.S3G010700.t1"; gene_id "Ledus.S3G010700"
# This transcript jg7136.t2 is derived from g6667.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7136.t3 is derived from g6667.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7137.t1 is derived from g6668.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1722229	1723692	.	-	.	Ledus.C7G019800
Ledus.C7	AUGUSTUS	transcript	1722495	1723692	.	-	.	transcript_id "Ledus.C7G019800.t1"; gene_id "Ledus.C7G019800"
Ledus.C7	AUGUSTUS	stop_codon	1722492	1722494	.	-	0	transcript_id "Ledus.C7G019800.t1"; gene_id "Ledus.C7G019800"
Ledus.C7	AUGUSTUS	CDS	1722495	1722502	0.9	-	2	transcript_id "Ledus.C7G019800.t1"; gene_id "Ledus.C7G019800"
Ledus.C7	AUGUSTUS	exon	1722495	1722502	.	-	.	transcript_id "Ledus.C7G019800.t1"; gene_id "Ledus.C7G019800"
Ledus.C7	AUGUSTUS	intron	1722503	1722578	.	-	.	transcript_id "Ledus.C7G019800.t1"; gene_id "Ledus.C7G019800"
Ledus.C7	AUGUSTUS	CDS	1722579	1723692	0.76	-	0	transcript_id "Ledus.C7G019800.t1"; gene_id "Ledus.C7G019800"
Ledus.C7	AUGUSTUS	exon	1722579	1723692	.	-	.	transcript_id "Ledus.C7G019800.t1"; gene_id "Ledus.C7G019800"
Ledus.C7	AUGUSTUS	start_codon	1723690	1723692	.	-	0	transcript_id "Ledus.C7G019800.t1"; gene_id "Ledus.C7G019800"
Ledus.C7	AUGUSTUS	transcript	1722229	1723692	.	-	.	transcript_id "Ledus.C7G019800.t2"; gene_id "Ledus.C7G019800"
Ledus.C7	AUGUSTUS	stop_codon	1722226	1722228	.	-	0	transcript_id "Ledus.C7G019800.t2"; gene_id "Ledus.C7G019800"
Ledus.C7	AUGUSTUS	CDS	1722229	1723692	0.97	-	0	transcript_id "Ledus.C7G019800.t2"; gene_id "Ledus.C7G019800"
Ledus.C7	AUGUSTUS	exon	1722229	1723692	.	-	.	transcript_id "Ledus.C7G019800.t2"; gene_id "Ledus.C7G019800"
Ledus.C7	AUGUSTUS	start_codon	1723690	1723692	.	-	0	transcript_id "Ledus.C7G019800.t2"; gene_id "Ledus.C7G019800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4638.t1 is derived from g2075.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18565011	18568405	.	-	.	Ledus.S1G205900
Ledus.S1	AUGUSTUS	transcript	18565011	18568405	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	stop_codon	18565008	18565010	.	-	0	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18565011	18565112	0.81	-	0	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18565011	18565112	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18565113	18565233	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18565234	18565338	1	-	0	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18565234	18565338	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18565339	18565418	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18565419	18565513	0.47	-	2	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18565419	18565513	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18565514	18565716	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18565717	18565789	0.56	-	0	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18565717	18565789	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18565790	18565887	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18565888	18565942	1	-	1	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18565888	18565942	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18565943	18566027	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18566028	18566092	1	-	0	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18566028	18566092	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18566093	18566196	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18566197	18566340	1	-	0	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18566197	18566340	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18566341	18566471	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18566472	18566525	1	-	0	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18566472	18566525	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18566526	18566699	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18566700	18566949	0.97	-	1	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18566700	18566949	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18566950	18567064	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18567065	18567171	0.98	-	0	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18567065	18567171	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18567172	18567280	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18567281	18567378	0.98	-	2	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18567281	18567378	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18567379	18567470	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18567471	18567585	1	-	0	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18567471	18567585	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18567586	18567735	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18567736	18567844	1	-	1	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18567736	18567844	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18567845	18567936	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18567937	18568052	1	-	0	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18567937	18568052	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18568053	18568144	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18568145	18568405	0.57	-	0	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18568145	18568405	.	-	.	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	start_codon	18568403	18568405	.	-	0	transcript_id "Ledus.S1G205900.t1"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	transcript	18565106	18568405	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	stop_codon	18565103	18565105	.	-	0	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18565106	18565112	0.69	-	1	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18565106	18565112	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18565113	18565264	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18565265	18565338	0.87	-	0	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18565265	18565338	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18565339	18565418	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18565419	18565513	0.49	-	2	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18565419	18565513	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18565514	18565716	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18565717	18565789	0.54	-	0	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18565717	18565789	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18565790	18565887	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18565888	18565942	1	-	1	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18565888	18565942	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18565943	18566027	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18566028	18566092	1	-	0	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18566028	18566092	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18566093	18566196	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18566197	18566340	1	-	0	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18566197	18566340	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18566341	18566471	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18566472	18566525	1	-	0	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18566472	18566525	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18566526	18566699	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18566700	18566949	1	-	1	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18566700	18566949	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18566950	18567064	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18567065	18567171	1	-	0	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18567065	18567171	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18567172	18567280	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18567281	18567378	0.97	-	2	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18567281	18567378	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18567379	18567470	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18567471	18567585	1	-	0	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18567471	18567585	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18567586	18567735	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18567736	18567844	1	-	1	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18567736	18567844	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18567845	18567936	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18567937	18568052	1	-	0	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18567937	18568052	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	intron	18568053	18568144	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	CDS	18568145	18568405	0.71	-	0	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	exon	18568145	18568405	.	-	.	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
Ledus.S1	AUGUSTUS	start_codon	18568403	18568405	.	-	0	transcript_id "Ledus.S1G205900.t2"; gene_id "Ledus.S1G205900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13104.t1 is derived from g6914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5692850	5693125	.	+	.	Ledus.S6G016600
Ledus.S6	AUGUSTUS	transcript	5692850	5693125	.	+	.	transcript_id "Ledus.S6G016600.t1"; gene_id "Ledus.S6G016600"
Ledus.S6	AUGUSTUS	start_codon	5692850	5692852	.	+	0	transcript_id "Ledus.S6G016600.t1"; gene_id "Ledus.S6G016600"
Ledus.S6	AUGUSTUS	CDS	5692850	5693125	0.83	+	0	transcript_id "Ledus.S6G016600.t1"; gene_id "Ledus.S6G016600"
Ledus.S6	AUGUSTUS	exon	5692850	5693125	.	+	.	transcript_id "Ledus.S6G016600.t1"; gene_id "Ledus.S6G016600"
Ledus.S6	AUGUSTUS	stop_codon	5693126	5693128	.	+	0	transcript_id "Ledus.S6G016600.t1"; gene_id "Ledus.S6G016600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12319.t1 is derived from g5940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11194046	11195964	.	-	.	Ledus.S4G147500
Ledus.S4	AUGUSTUS	transcript	11194046	11195964	.	-	.	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	stop_codon	11194043	11194045	.	-	0	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	CDS	11194046	11194210	0.94	-	0	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	exon	11194046	11194210	.	-	.	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	intron	11194211	11194389	.	-	.	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	CDS	11194390	11194626	1	-	0	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	exon	11194390	11194626	.	-	.	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	intron	11194627	11194762	.	-	.	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	CDS	11194763	11195074	0.77	-	0	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	exon	11194763	11195074	.	-	.	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	intron	11195075	11195712	.	-	.	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	CDS	11195713	11195964	1	-	0	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	exon	11195713	11195964	.	-	.	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
Ledus.S4	AUGUSTUS	start_codon	11195962	11195964	.	-	0	transcript_id "Ledus.S4G147500.t1"; gene_id "Ledus.S4G147500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12201.t1 is derived from g5820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10271101	10271853	.	-	.	Ledus.S4G135700
Ledus.S4	AUGUSTUS	transcript	10271101	10271853	.	-	.	transcript_id "Ledus.S4G135700.t1"; gene_id "Ledus.S4G135700"
Ledus.S4	AUGUSTUS	stop_codon	10271098	10271100	.	-	0	transcript_id "Ledus.S4G135700.t1"; gene_id "Ledus.S4G135700"
Ledus.S4	AUGUSTUS	CDS	10271101	10271853	1	-	0	transcript_id "Ledus.S4G135700.t1"; gene_id "Ledus.S4G135700"
Ledus.S4	AUGUSTUS	exon	10271101	10271853	.	-	.	transcript_id "Ledus.S4G135700.t1"; gene_id "Ledus.S4G135700"
Ledus.S4	AUGUSTUS	start_codon	10271851	10271853	.	-	0	transcript_id "Ledus.S4G135700.t1"; gene_id "Ledus.S4G135700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6519.t1 is derived from g3962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31851840	31853545	.	+	.	Ledus.S1G394000
Ledus.S1	AUGUSTUS	transcript	31851840	31853545	.	+	.	transcript_id "Ledus.S1G394000.t1"; gene_id "Ledus.S1G394000"
Ledus.S1	AUGUSTUS	start_codon	31851840	31851842	.	+	0	transcript_id "Ledus.S1G394000.t1"; gene_id "Ledus.S1G394000"
Ledus.S1	AUGUSTUS	CDS	31851840	31852010	0.73	+	0	transcript_id "Ledus.S1G394000.t1"; gene_id "Ledus.S1G394000"
Ledus.S1	AUGUSTUS	exon	31851840	31852010	.	+	.	transcript_id "Ledus.S1G394000.t1"; gene_id "Ledus.S1G394000"
Ledus.S1	AUGUSTUS	intron	31852011	31852090	.	+	.	transcript_id "Ledus.S1G394000.t1"; gene_id "Ledus.S1G394000"
Ledus.S1	AUGUSTUS	CDS	31852091	31852095	0.88	+	0	transcript_id "Ledus.S1G394000.t1"; gene_id "Ledus.S1G394000"
Ledus.S1	AUGUSTUS	exon	31852091	31852095	.	+	.	transcript_id "Ledus.S1G394000.t1"; gene_id "Ledus.S1G394000"
Ledus.S1	AUGUSTUS	intron	31852096	31852374	.	+	.	transcript_id "Ledus.S1G394000.t1"; gene_id "Ledus.S1G394000"
Ledus.S1	AUGUSTUS	CDS	31852375	31853545	0.87	+	1	transcript_id "Ledus.S1G394000.t1"; gene_id "Ledus.S1G394000"
Ledus.S1	AUGUSTUS	exon	31852375	31853545	.	+	.	transcript_id "Ledus.S1G394000.t1"; gene_id "Ledus.S1G394000"
Ledus.S1	AUGUSTUS	stop_codon	31853546	31853548	.	+	0	transcript_id "Ledus.S1G394000.t1"; gene_id "Ledus.S1G394000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3807.t1 is derived from g1243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12454540	12455334	.	-	.	Ledus.S1G122800
Ledus.S1	AUGUSTUS	transcript	12454540	12455334	.	-	.	transcript_id "Ledus.S1G122800.t1"; gene_id "Ledus.S1G122800"
Ledus.S1	AUGUSTUS	stop_codon	12454537	12454539	.	-	0	transcript_id "Ledus.S1G122800.t1"; gene_id "Ledus.S1G122800"
Ledus.S1	AUGUSTUS	CDS	12454540	12454814	0.27	-	2	transcript_id "Ledus.S1G122800.t1"; gene_id "Ledus.S1G122800"
Ledus.S1	AUGUSTUS	exon	12454540	12454814	.	-	.	transcript_id "Ledus.S1G122800.t1"; gene_id "Ledus.S1G122800"
Ledus.S1	AUGUSTUS	intron	12454815	12454961	.	-	.	transcript_id "Ledus.S1G122800.t1"; gene_id "Ledus.S1G122800"
Ledus.S1	AUGUSTUS	CDS	12454962	12455334	0.39	-	0	transcript_id "Ledus.S1G122800.t1"; gene_id "Ledus.S1G122800"
Ledus.S1	AUGUSTUS	exon	12454962	12455334	.	-	.	transcript_id "Ledus.S1G122800.t1"; gene_id "Ledus.S1G122800"
Ledus.S1	AUGUSTUS	start_codon	12455332	12455334	.	-	0	transcript_id "Ledus.S1G122800.t1"; gene_id "Ledus.S1G122800"
# This transcript jg11204.t2 is derived from g4822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11205.t1 is derived from g4823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2705087	2706112	.	+	.	Ledus.S4G036100
Ledus.S4	AUGUSTUS	transcript	2705087	2706112	.	+	.	transcript_id "Ledus.S4G036100.t1"; gene_id "Ledus.S4G036100"
Ledus.S4	AUGUSTUS	start_codon	2705087	2705089	.	+	0	transcript_id "Ledus.S4G036100.t1"; gene_id "Ledus.S4G036100"
Ledus.S4	AUGUSTUS	CDS	2705087	2705312	0.99	+	0	transcript_id "Ledus.S4G036100.t1"; gene_id "Ledus.S4G036100"
Ledus.S4	AUGUSTUS	exon	2705087	2705312	.	+	.	transcript_id "Ledus.S4G036100.t1"; gene_id "Ledus.S4G036100"
Ledus.S4	AUGUSTUS	intron	2705313	2705432	.	+	.	transcript_id "Ledus.S4G036100.t1"; gene_id "Ledus.S4G036100"
Ledus.S4	AUGUSTUS	CDS	2705433	2706112	0.97	+	2	transcript_id "Ledus.S4G036100.t1"; gene_id "Ledus.S4G036100"
Ledus.S4	AUGUSTUS	exon	2705433	2706112	.	+	.	transcript_id "Ledus.S4G036100.t1"; gene_id "Ledus.S4G036100"
Ledus.S4	AUGUSTUS	stop_codon	2706113	2706115	.	+	0	transcript_id "Ledus.S4G036100.t1"; gene_id "Ledus.S4G036100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13162.t1 is derived from g6972.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7795467	7796438	.	-	.	Ledus.S6G022400
Ledus.S6	AUGUSTUS	transcript	7795467	7796438	.	-	.	transcript_id "Ledus.S6G022400.t1"; gene_id "Ledus.S6G022400"
Ledus.S6	AUGUSTUS	stop_codon	7795464	7795466	.	-	0	transcript_id "Ledus.S6G022400.t1"; gene_id "Ledus.S6G022400"
Ledus.S6	AUGUSTUS	CDS	7795467	7796438	0.13	-	0	transcript_id "Ledus.S6G022400.t1"; gene_id "Ledus.S6G022400"
Ledus.S6	AUGUSTUS	exon	7795467	7796438	.	-	.	transcript_id "Ledus.S6G022400.t1"; gene_id "Ledus.S6G022400"
Ledus.S6	AUGUSTUS	start_codon	7796436	7796438	.	-	0	transcript_id "Ledus.S6G022400.t1"; gene_id "Ledus.S6G022400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10683.t1 is derived from g11713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17071029	17072388	.	+	.	Ledus.S3G216000
Ledus.S3	AUGUSTUS	transcript	17071029	17072388	.	+	.	transcript_id "Ledus.S3G216000.t1"; gene_id "Ledus.S3G216000"
Ledus.S3	AUGUSTUS	start_codon	17071029	17071031	.	+	0	transcript_id "Ledus.S3G216000.t1"; gene_id "Ledus.S3G216000"
Ledus.S3	AUGUSTUS	CDS	17071029	17071280	0.87	+	0	transcript_id "Ledus.S3G216000.t1"; gene_id "Ledus.S3G216000"
Ledus.S3	AUGUSTUS	exon	17071029	17071280	.	+	.	transcript_id "Ledus.S3G216000.t1"; gene_id "Ledus.S3G216000"
Ledus.S3	AUGUSTUS	intron	17071281	17071539	.	+	.	transcript_id "Ledus.S3G216000.t1"; gene_id "Ledus.S3G216000"
Ledus.S3	AUGUSTUS	CDS	17071540	17071879	0.49	+	0	transcript_id "Ledus.S3G216000.t1"; gene_id "Ledus.S3G216000"
Ledus.S3	AUGUSTUS	exon	17071540	17071879	.	+	.	transcript_id "Ledus.S3G216000.t1"; gene_id "Ledus.S3G216000"
Ledus.S3	AUGUSTUS	intron	17071880	17072011	.	+	.	transcript_id "Ledus.S3G216000.t1"; gene_id "Ledus.S3G216000"
Ledus.S3	AUGUSTUS	CDS	17072012	17072388	0.83	+	2	transcript_id "Ledus.S3G216000.t1"; gene_id "Ledus.S3G216000"
Ledus.S3	AUGUSTUS	exon	17072012	17072388	.	+	.	transcript_id "Ledus.S3G216000.t1"; gene_id "Ledus.S3G216000"
Ledus.S3	AUGUSTUS	stop_codon	17072389	17072391	.	+	0	transcript_id "Ledus.S3G216000.t1"; gene_id "Ledus.S3G216000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11196.t1 is derived from g4814.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2650137	2652017	.	-	.	Ledus.S4G035200
Ledus.S4	AUGUSTUS	transcript	2650137	2652017	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	stop_codon	2650134	2650136	.	-	0	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2650137	2650147	0.89	-	2	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2650137	2650147	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	intron	2650148	2650452	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2650453	2650519	0.89	-	0	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2650453	2650519	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	intron	2650520	2650599	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2650600	2650610	1	-	2	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2650600	2650610	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	intron	2650611	2650685	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2650686	2650724	1	-	2	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2650686	2650724	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	intron	2650725	2650945	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2650946	2651193	0.95	-	1	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2650946	2651193	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	intron	2651194	2651545	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2651546	2651627	0.66	-	2	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2651546	2651627	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	intron	2651628	2651711	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2651712	2651719	0.65	-	1	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2651712	2651719	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	intron	2651720	2651976	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2651977	2652017	0.49	-	0	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2651977	2652017	.	-	.	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	start_codon	2652015	2652017	.	-	0	transcript_id "Ledus.S4G035200.t1"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	transcript	2650662	2652017	.	-	.	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	stop_codon	2650659	2650661	.	-	0	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2650662	2650724	0.73	-	0	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2650662	2650724	.	-	.	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	intron	2650725	2650814	.	-	.	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2650815	2650862	0.75	-	0	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2650815	2650862	.	-	.	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	intron	2650863	2650945	.	-	.	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2650946	2650985	0.77	-	1	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2650946	2650985	.	-	.	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	intron	2650986	2651545	.	-	.	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2651546	2651627	0.69	-	2	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2651546	2651627	.	-	.	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	intron	2651628	2651711	.	-	.	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2651712	2651719	0.64	-	1	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2651712	2651719	.	-	.	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	intron	2651720	2651976	.	-	.	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	CDS	2651977	2652017	0.48	-	0	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	exon	2651977	2652017	.	-	.	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
Ledus.S4	AUGUSTUS	start_codon	2652015	2652017	.	-	0	transcript_id "Ledus.S4G035200.t2"; gene_id "Ledus.S4G035200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7699.t1 is derived from g12370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5278110	5279650	.	-	.	Ledus.S5G047700
Ledus.S5	AUGUSTUS	transcript	5278110	5279650	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	stop_codon	5278107	5278109	.	-	0	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	CDS	5278110	5278223	0.96	-	0	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	exon	5278110	5278223	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	intron	5278224	5278312	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	CDS	5278313	5278435	1	-	0	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	exon	5278313	5278435	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	intron	5278436	5278509	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	CDS	5278510	5278605	1	-	0	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	exon	5278510	5278605	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	intron	5278606	5278691	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	CDS	5278692	5278739	1	-	0	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	exon	5278692	5278739	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	intron	5278740	5278809	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	CDS	5278810	5278947	1	-	0	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	exon	5278810	5278947	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	intron	5278948	5279041	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	CDS	5279042	5279143	1	-	0	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	exon	5279042	5279143	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	intron	5279144	5279218	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	CDS	5279219	5279341	1	-	0	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	exon	5279219	5279341	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	intron	5279342	5279410	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	CDS	5279411	5279650	0.97	-	0	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	exon	5279411	5279650	.	-	.	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
Ledus.S5	AUGUSTUS	start_codon	5279648	5279650	.	-	0	transcript_id "Ledus.S5G047700.t1"; gene_id "Ledus.S5G047700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6584.t1 is derived from g4027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32498125	32502738	.	-	.	Ledus.S1G400500
Ledus.S1	AUGUSTUS	transcript	32498125	32502738	.	-	.	transcript_id "Ledus.S1G400500.t1"; gene_id "Ledus.S1G400500"
Ledus.S1	AUGUSTUS	stop_codon	32498122	32498124	.	-	0	transcript_id "Ledus.S1G400500.t1"; gene_id "Ledus.S1G400500"
Ledus.S1	AUGUSTUS	CDS	32498125	32498277	0.56	-	0	transcript_id "Ledus.S1G400500.t1"; gene_id "Ledus.S1G400500"
Ledus.S1	AUGUSTUS	exon	32498125	32498277	.	-	.	transcript_id "Ledus.S1G400500.t1"; gene_id "Ledus.S1G400500"
Ledus.S1	AUGUSTUS	intron	32498278	32498369	.	-	.	transcript_id "Ledus.S1G400500.t1"; gene_id "Ledus.S1G400500"
Ledus.S1	AUGUSTUS	CDS	32498370	32499465	0.95	-	1	transcript_id "Ledus.S1G400500.t1"; gene_id "Ledus.S1G400500"
Ledus.S1	AUGUSTUS	exon	32498370	32499465	.	-	.	transcript_id "Ledus.S1G400500.t1"; gene_id "Ledus.S1G400500"
Ledus.S1	AUGUSTUS	intron	32499466	32499754	.	-	.	transcript_id "Ledus.S1G400500.t1"; gene_id "Ledus.S1G400500"
Ledus.S1	AUGUSTUS	CDS	32499755	32502738	0.98	-	0	transcript_id "Ledus.S1G400500.t1"; gene_id "Ledus.S1G400500"
Ledus.S1	AUGUSTUS	exon	32499755	32502738	.	-	.	transcript_id "Ledus.S1G400500.t1"; gene_id "Ledus.S1G400500"
Ledus.S1	AUGUSTUS	start_codon	32502736	32502738	.	-	0	transcript_id "Ledus.S1G400500.t1"; gene_id "Ledus.S1G400500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2580.t1 is derived from g13.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27816	30753	.	-	.	Ledus.S1G000100
Ledus.S1	AUGUSTUS	transcript	27816	30753	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	stop_codon	27813	27815	.	-	0	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	CDS	27816	27980	1	-	0	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	exon	27816	27980	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	intron	27981	28061	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	CDS	28062	28253	1	-	0	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	exon	28062	28253	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	intron	28254	28346	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	CDS	28347	28502	1	-	0	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	exon	28347	28502	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	intron	28503	28634	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	CDS	28635	28802	1	-	0	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	exon	28635	28802	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	intron	28803	28949	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	CDS	28950	29089	1	-	2	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	exon	28950	29089	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	intron	29090	29238	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	CDS	29239	29356	1	-	0	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	exon	29239	29356	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	intron	29357	29489	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	CDS	29490	29717	1	-	0	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	exon	29490	29717	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	intron	29718	29803	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	CDS	29804	29944	1	-	0	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	exon	29804	29944	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	intron	29945	30047	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	CDS	30048	30113	0.94	-	0	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	exon	30048	30113	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	intron	30114	30223	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	CDS	30224	30316	1	-	0	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	exon	30224	30316	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	intron	30317	30405	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	CDS	30406	30753	1	-	0	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	exon	30406	30753	.	-	.	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
Ledus.S1	AUGUSTUS	start_codon	30751	30753	.	-	0	transcript_id "Ledus.S1G000100.t1"; gene_id "Ledus.S1G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5807.t1 is derived from g3249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27047570	27050456	.	+	.	Ledus.S1G322800
Ledus.S1	AUGUSTUS	transcript	27047570	27050456	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	start_codon	27047570	27047572	.	+	0	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	CDS	27047570	27048031	0.94	+	0	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	exon	27047570	27048031	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	intron	27048032	27048214	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	CDS	27048215	27048295	1	+	0	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	exon	27048215	27048295	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	intron	27048296	27048395	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	CDS	27048396	27048480	1	+	0	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	exon	27048396	27048480	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	intron	27048481	27048642	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	CDS	27048643	27048713	1	+	2	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	exon	27048643	27048713	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	intron	27048714	27048808	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	CDS	27048809	27048897	1	+	0	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	exon	27048809	27048897	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	intron	27048898	27049019	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	CDS	27049020	27049152	1	+	1	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	exon	27049020	27049152	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	intron	27049153	27049310	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	CDS	27049311	27049540	1	+	0	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	exon	27049311	27049540	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	intron	27049541	27049663	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	CDS	27049664	27050140	1	+	1	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	exon	27049664	27050140	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	intron	27050141	27050239	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	CDS	27050240	27050456	0.4	+	1	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	exon	27050240	27050456	.	+	.	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
Ledus.S1	AUGUSTUS	stop_codon	27050457	27050459	.	+	0	transcript_id "Ledus.S1G322800.t1"; gene_id "Ledus.S1G322800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7591.t1 is derived from g12262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4258972	4260379	.	-	.	Ledus.S5G036900
Ledus.S5	AUGUSTUS	transcript	4258972	4260379	.	-	.	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	stop_codon	4258969	4258971	.	-	0	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	CDS	4258972	4259168	0.82	-	2	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	exon	4258972	4259168	.	-	.	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	intron	4259169	4259309	.	-	.	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	CDS	4259310	4259818	0.92	-	1	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	exon	4259310	4259818	.	-	.	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	intron	4259819	4259918	.	-	.	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	CDS	4259919	4260043	1	-	0	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	exon	4259919	4260043	.	-	.	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	intron	4260044	4260120	.	-	.	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	CDS	4260121	4260195	1	-	0	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	exon	4260121	4260195	.	-	.	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	intron	4260196	4260292	.	-	.	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	CDS	4260293	4260379	0.98	-	0	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	exon	4260293	4260379	.	-	.	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
Ledus.S5	AUGUSTUS	start_codon	4260377	4260379	.	-	0	transcript_id "Ledus.S5G036900.t1"; gene_id "Ledus.S5G036900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3590.t1 is derived from g1026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9870343	9871514	.	-	.	Ledus.S1G101100
Ledus.S1	AUGUSTUS	transcript	9870343	9871514	.	-	.	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	stop_codon	9870340	9870342	.	-	0	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	CDS	9870343	9870537	1	-	0	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	exon	9870343	9870537	.	-	.	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	intron	9870538	9870636	.	-	.	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	CDS	9870637	9870763	0.94	-	1	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	exon	9870637	9870763	.	-	.	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	intron	9870764	9870858	.	-	.	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	CDS	9870859	9871165	0.69	-	2	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	exon	9870859	9871165	.	-	.	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	intron	9871166	9871264	.	-	.	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	CDS	9871265	9871514	0.43	-	0	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	exon	9871265	9871514	.	-	.	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
Ledus.S1	AUGUSTUS	start_codon	9871512	9871514	.	-	0	transcript_id "Ledus.S1G101100.t1"; gene_id "Ledus.S1G101100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4877.t1 is derived from g2315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20496838	20499673	.	-	.	Ledus.S1G229800
Ledus.S1	AUGUSTUS	transcript	20496838	20499673	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	stop_codon	20496835	20496837	.	-	0	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20496838	20496975	0.99	-	0	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20496838	20496975	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20496976	20497152	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20497153	20497191	1	-	0	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20497153	20497191	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20497192	20497410	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20497411	20497691	0.95	-	2	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20497411	20497691	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20497692	20497782	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20497783	20497887	0.87	-	2	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20497783	20497887	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20497888	20497998	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20497999	20498137	1	-	0	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20497999	20498137	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20498138	20498262	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20498263	20498319	1	-	0	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20498263	20498319	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20498320	20498458	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20498459	20498599	1	-	0	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20498459	20498599	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20498600	20498727	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20498728	20498886	1	-	0	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20498728	20498886	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20498887	20498988	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20498989	20499285	1	-	0	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20498989	20499285	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20499286	20499393	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20499394	20499484	1	-	1	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20499394	20499484	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20499485	20499575	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20499576	20499673	1	-	0	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20499576	20499673	.	-	.	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	start_codon	20499671	20499673	.	-	0	transcript_id "Ledus.S1G229800.t1"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	transcript	20496838	20499673	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	stop_codon	20496835	20496837	.	-	0	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20496838	20496975	1	-	0	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20496838	20496975	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20496976	20497152	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20497153	20497191	1	-	0	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20497153	20497191	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20497192	20497410	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20497411	20497628	0.97	-	2	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20497411	20497628	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20497629	20497782	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20497783	20497887	0.77	-	2	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20497783	20497887	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20497888	20497998	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20497999	20498137	0.98	-	0	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20497999	20498137	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20498138	20498262	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20498263	20498319	1	-	0	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20498263	20498319	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20498320	20498458	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20498459	20498599	1	-	0	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20498459	20498599	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20498600	20498727	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20498728	20498886	1	-	0	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20498728	20498886	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20498887	20498988	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20498989	20499285	1	-	0	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20498989	20499285	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20499286	20499393	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20499394	20499484	1	-	1	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20499394	20499484	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	intron	20499485	20499575	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	CDS	20499576	20499673	1	-	0	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	exon	20499576	20499673	.	-	.	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
Ledus.S1	AUGUSTUS	start_codon	20499671	20499673	.	-	0	transcript_id "Ledus.S1G229800.t2"; gene_id "Ledus.S1G229800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12845.t1 is derived from g11879.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	139889	143289	.	-	.	Ledus.C11G000900
Ledus.C11	AUGUSTUS	transcript	139889	143289	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	stop_codon	139886	139888	.	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	139889	140119	1	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	139889	140119	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	140120	140212	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	140213	140320	1	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	140213	140320	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	140321	140402	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	140403	140489	1	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	140403	140489	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	140490	140578	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	140579	140659	1	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	140579	140659	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	140660	140795	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	140796	140930	1	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	140796	140930	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	140931	141013	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	141014	141235	1	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	141014	141235	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	141236	141320	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	141321	141401	1	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	141321	141401	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	141402	141615	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	141616	141777	1	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	141616	141777	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	141778	141887	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	141888	141982	0.98	-	2	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	141888	141982	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	141983	142077	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	142078	142173	1	-	2	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	142078	142173	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	142174	142479	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	142480	142621	1	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	142480	142621	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	142622	142779	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	142780	142875	1	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	142780	142875	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	142876	142971	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	142972	143110	1	-	1	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	142972	143110	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	intron	143111	143209	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	CDS	143210	143289	0.94	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	exon	143210	143289	.	-	.	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
Ledus.C11	AUGUSTUS	start_codon	143287	143289	.	-	0	transcript_id "Ledus.C11G000900.t1"; gene_id "Ledus.C11G000900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12468.t1 is derived from g6089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12179519	12181288	.	-	.	Ledus.S4G162400
Ledus.S4	AUGUSTUS	transcript	12179519	12181288	.	-	.	transcript_id "Ledus.S4G162400.t1"; gene_id "Ledus.S4G162400"
Ledus.S4	AUGUSTUS	stop_codon	12179516	12179518	.	-	0	transcript_id "Ledus.S4G162400.t1"; gene_id "Ledus.S4G162400"
Ledus.S4	AUGUSTUS	CDS	12179519	12180498	0.91	-	2	transcript_id "Ledus.S4G162400.t1"; gene_id "Ledus.S4G162400"
Ledus.S4	AUGUSTUS	exon	12179519	12180498	.	-	.	transcript_id "Ledus.S4G162400.t1"; gene_id "Ledus.S4G162400"
Ledus.S4	AUGUSTUS	intron	12180499	12180589	.	-	.	transcript_id "Ledus.S4G162400.t1"; gene_id "Ledus.S4G162400"
Ledus.S4	AUGUSTUS	CDS	12180590	12180971	0.5	-	0	transcript_id "Ledus.S4G162400.t1"; gene_id "Ledus.S4G162400"
Ledus.S4	AUGUSTUS	exon	12180590	12180971	.	-	.	transcript_id "Ledus.S4G162400.t1"; gene_id "Ledus.S4G162400"
Ledus.S4	AUGUSTUS	intron	12180972	12181036	.	-	.	transcript_id "Ledus.S4G162400.t1"; gene_id "Ledus.S4G162400"
Ledus.S4	AUGUSTUS	CDS	12181037	12181288	0.48	-	0	transcript_id "Ledus.S4G162400.t1"; gene_id "Ledus.S4G162400"
Ledus.S4	AUGUSTUS	exon	12181037	12181288	.	-	.	transcript_id "Ledus.S4G162400.t1"; gene_id "Ledus.S4G162400"
Ledus.S4	AUGUSTUS	start_codon	12181286	12181288	.	-	0	transcript_id "Ledus.S4G162400.t1"; gene_id "Ledus.S4G162400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12263.t1 is derived from g5883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10699212	10701437	.	+	.	Ledus.S4G141900
Ledus.S4	AUGUSTUS	transcript	10699212	10701437	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	start_codon	10699212	10699214	.	+	0	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	CDS	10699212	10699344	0.73	+	0	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	exon	10699212	10699344	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	intron	10699345	10699586	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	CDS	10699587	10700001	0.74	+	2	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	exon	10699587	10700001	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	intron	10700002	10700122	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	CDS	10700123	10700196	1	+	1	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	exon	10700123	10700196	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	intron	10700197	10700278	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	CDS	10700279	10700361	1	+	2	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	exon	10700279	10700361	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	intron	10700362	10700513	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	CDS	10700514	10700538	1	+	0	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	exon	10700514	10700538	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	intron	10700539	10700695	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	CDS	10700696	10700715	1	+	2	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	exon	10700696	10700715	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	intron	10700716	10700831	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	CDS	10700832	10700987	1	+	0	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	exon	10700832	10700987	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	intron	10700988	10701077	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	CDS	10701078	10701437	0.97	+	0	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	exon	10701078	10701437	.	+	.	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
Ledus.S4	AUGUSTUS	stop_codon	10701438	10701440	.	+	0	transcript_id "Ledus.S4G141900.t1"; gene_id "Ledus.S4G141900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4398.t1 is derived from g1834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16796477	16797049	.	-	.	Ledus.S1G181900
Ledus.S1	AUGUSTUS	transcript	16796477	16797049	.	-	.	transcript_id "Ledus.S1G181900.t1"; gene_id "Ledus.S1G181900"
Ledus.S1	AUGUSTUS	stop_codon	16796474	16796476	.	-	0	transcript_id "Ledus.S1G181900.t1"; gene_id "Ledus.S1G181900"
Ledus.S1	AUGUSTUS	CDS	16796477	16796534	0.99	-	1	transcript_id "Ledus.S1G181900.t1"; gene_id "Ledus.S1G181900"
Ledus.S1	AUGUSTUS	exon	16796477	16796534	.	-	.	transcript_id "Ledus.S1G181900.t1"; gene_id "Ledus.S1G181900"
Ledus.S1	AUGUSTUS	intron	16796535	16796716	.	-	.	transcript_id "Ledus.S1G181900.t1"; gene_id "Ledus.S1G181900"
Ledus.S1	AUGUSTUS	CDS	16796717	16796721	1	-	0	transcript_id "Ledus.S1G181900.t1"; gene_id "Ledus.S1G181900"
Ledus.S1	AUGUSTUS	exon	16796717	16796721	.	-	.	transcript_id "Ledus.S1G181900.t1"; gene_id "Ledus.S1G181900"
Ledus.S1	AUGUSTUS	intron	16796722	16796809	.	-	.	transcript_id "Ledus.S1G181900.t1"; gene_id "Ledus.S1G181900"
Ledus.S1	AUGUSTUS	CDS	16796810	16797049	0.52	-	0	transcript_id "Ledus.S1G181900.t1"; gene_id "Ledus.S1G181900"
Ledus.S1	AUGUSTUS	exon	16796810	16797049	.	-	.	transcript_id "Ledus.S1G181900.t1"; gene_id "Ledus.S1G181900"
Ledus.S1	AUGUSTUS	start_codon	16797047	16797049	.	-	0	transcript_id "Ledus.S1G181900.t1"; gene_id "Ledus.S1G181900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3711.t1 is derived from g1147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11086113	11091345	.	-	.	Ledus.S1G113200
Ledus.S1	AUGUSTUS	transcript	11086113	11091345	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	stop_codon	11086110	11086112	.	-	0	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	CDS	11086113	11086217	1	-	0	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	exon	11086113	11086217	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	intron	11086218	11086333	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	CDS	11086334	11086390	0.91	-	0	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	exon	11086334	11086390	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	intron	11086391	11086514	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	CDS	11086515	11086658	1	-	0	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	exon	11086515	11086658	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	intron	11086659	11086915	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	CDS	11086916	11087080	1	-	0	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	exon	11086916	11087080	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	intron	11087081	11087196	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	CDS	11087197	11087421	1	-	0	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	exon	11087197	11087421	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	intron	11087422	11088682	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	CDS	11088683	11089028	1	-	1	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	exon	11088683	11089028	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	intron	11089029	11089311	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	CDS	11089312	11089427	1	-	0	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	exon	11089312	11089427	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	intron	11089428	11089525	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	CDS	11089526	11089621	1	-	0	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	exon	11089526	11089621	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	intron	11089622	11089830	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	CDS	11089831	11090392	0.99	-	1	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	exon	11089831	11090392	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	intron	11090393	11090710	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	CDS	11090711	11090772	1	-	0	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	exon	11090711	11090772	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	intron	11090773	11091132	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	CDS	11091133	11091345	0.79	-	0	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	exon	11091133	11091345	.	-	.	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
Ledus.S1	AUGUSTUS	start_codon	11091343	11091345	.	-	0	transcript_id "Ledus.S1G113200.t1"; gene_id "Ledus.S1G113200"
# This transcript jg11786.t2 is derived from g5405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11787.t1 is derived from g5406.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6765319	6766577	.	-	.	Ledus.S4G094300
Ledus.S4	AUGUSTUS	transcript	6765319	6766577	.	-	.	transcript_id "Ledus.S4G094300.t1"; gene_id "Ledus.S4G094300"
Ledus.S4	AUGUSTUS	stop_codon	6765316	6765318	.	-	0	transcript_id "Ledus.S4G094300.t1"; gene_id "Ledus.S4G094300"
Ledus.S4	AUGUSTUS	CDS	6765319	6765895	1	-	1	transcript_id "Ledus.S4G094300.t1"; gene_id "Ledus.S4G094300"
Ledus.S4	AUGUSTUS	exon	6765319	6765895	.	-	.	transcript_id "Ledus.S4G094300.t1"; gene_id "Ledus.S4G094300"
Ledus.S4	AUGUSTUS	intron	6765896	6765979	.	-	.	transcript_id "Ledus.S4G094300.t1"; gene_id "Ledus.S4G094300"
Ledus.S4	AUGUSTUS	CDS	6765980	6766170	1	-	0	transcript_id "Ledus.S4G094300.t1"; gene_id "Ledus.S4G094300"
Ledus.S4	AUGUSTUS	exon	6765980	6766170	.	-	.	transcript_id "Ledus.S4G094300.t1"; gene_id "Ledus.S4G094300"
Ledus.S4	AUGUSTUS	intron	6766171	6766238	.	-	.	transcript_id "Ledus.S4G094300.t1"; gene_id "Ledus.S4G094300"
Ledus.S4	AUGUSTUS	CDS	6766239	6766577	1	-	0	transcript_id "Ledus.S4G094300.t1"; gene_id "Ledus.S4G094300"
Ledus.S4	AUGUSTUS	exon	6766239	6766577	.	-	.	transcript_id "Ledus.S4G094300.t1"; gene_id "Ledus.S4G094300"
Ledus.S4	AUGUSTUS	start_codon	6766575	6766577	.	-	0	transcript_id "Ledus.S4G094300.t1"; gene_id "Ledus.S4G094300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10876.t1 is derived from g4494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	230676	235439	.	+	.	Ledus.S4G003200
Ledus.S4	AUGUSTUS	transcript	230676	235439	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	start_codon	230676	230678	.	+	0	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	230676	231398	0.78	+	0	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	230676	231398	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	231399	231533	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	231534	231631	1	+	0	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	231534	231631	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	231632	231825	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	231826	231919	1	+	1	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	231826	231919	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	231920	232133	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	232134	232211	1	+	0	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	232134	232211	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	232212	232388	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	232389	232492	1	+	0	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	232389	232492	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	232493	232773	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	232774	232855	1	+	1	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	232774	232855	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	232856	233049	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	233050	233189	1	+	0	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	233050	233189	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	233190	233535	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	233536	233614	1	+	1	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	233536	233614	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	233615	233749	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	233750	233813	1	+	0	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	233750	233813	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	233814	233916	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	233917	234008	0.92	+	2	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	233917	234008	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	234009	234110	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	234111	234176	1	+	0	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	234111	234176	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	234177	234294	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	234295	234411	0.98	+	0	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	234295	234411	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	234412	234525	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	234526	234711	0.98	+	0	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	234526	234711	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	intron	234712	234788	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	CDS	234789	235439	0.97	+	0	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	exon	234789	235439	.	+	.	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
Ledus.S4	AUGUSTUS	stop_codon	235440	235442	.	+	0	transcript_id "Ledus.S4G003200.t1"; gene_id "Ledus.S4G003200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8840.t1 is derived from g9870.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2230815	2232523	.	-	.	Ledus.S3G031700
Ledus.S3	AUGUSTUS	transcript	2230815	2232523	.	-	.	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	stop_codon	2230812	2230814	.	-	0	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	CDS	2230815	2231339	0.29	-	0	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	exon	2230815	2231339	.	-	.	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	intron	2231340	2231538	.	-	.	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	CDS	2231539	2231628	0.37	-	0	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	exon	2231539	2231628	.	-	.	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	intron	2231629	2231752	.	-	.	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	CDS	2231753	2231907	0.28	-	2	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	exon	2231753	2231907	.	-	.	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	intron	2231908	2232125	.	-	.	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	CDS	2232126	2232270	0.57	-	0	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	exon	2232126	2232270	.	-	.	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	intron	2232271	2232490	.	-	.	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	CDS	2232491	2232523	0.94	-	0	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	exon	2232491	2232523	.	-	.	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
Ledus.S3	AUGUSTUS	start_codon	2232521	2232523	.	-	0	transcript_id "Ledus.S3G031700.t1"; gene_id "Ledus.S3G031700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9652.t1 is derived from g10682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8784702	8786642	.	+	.	Ledus.S3G112900
Ledus.S3	AUGUSTUS	transcript	8784702	8786642	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	start_codon	8784702	8784704	.	+	0	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	CDS	8784702	8784923	0.68	+	0	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	exon	8784702	8784923	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	intron	8784924	8785015	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	CDS	8785016	8785148	0.66	+	0	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	exon	8785016	8785148	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	intron	8785149	8785238	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	CDS	8785239	8785358	0.71	+	2	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	exon	8785239	8785358	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	intron	8785359	8785444	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	CDS	8785445	8785662	0.99	+	2	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	exon	8785445	8785662	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	intron	8785663	8785751	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	CDS	8785752	8785943	1	+	0	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	exon	8785752	8785943	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	intron	8785944	8786029	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	CDS	8786030	8786155	1	+	0	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	exon	8786030	8786155	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	intron	8786156	8786240	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	CDS	8786241	8786642	0.99	+	0	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	exon	8786241	8786642	.	+	.	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
Ledus.S3	AUGUSTUS	stop_codon	8786643	8786645	.	+	0	transcript_id "Ledus.S3G112900.t1"; gene_id "Ledus.S3G112900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2605.t1 is derived from g38.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	367914	372636	.	+	.	Ledus.S1G002600
Ledus.S1	AUGUSTUS	transcript	367914	372636	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	start_codon	367914	367916	.	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	367914	367970	0.99	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	367914	367970	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	367971	368047	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	368048	368251	1	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	368048	368251	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	368252	368353	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	368354	368389	1	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	368354	368389	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	368390	368468	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	368469	368581	1	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	368469	368581	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	368582	368689	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	368690	368735	1	+	1	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	368690	368735	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	368736	368887	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	368888	368934	1	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	368888	368934	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	368935	369025	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	369026	369133	1	+	1	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	369026	369133	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	369134	369270	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	369271	369346	1	+	1	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	369271	369346	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	369347	369516	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	369517	369589	1	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	369517	369589	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	369590	369683	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	369684	369856	0.75	+	2	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	369684	369856	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	369857	369943	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	369944	370026	1	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	369944	370026	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	370027	370127	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	370128	370267	1	+	1	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	370128	370267	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	370268	370357	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	370358	370500	1	+	2	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	370358	370500	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	370501	370581	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	370582	370632	1	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	370582	370632	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	370633	370713	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	370714	370777	1	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	370714	370777	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	370778	370844	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	370845	370988	1	+	2	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	370845	370988	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	370989	371109	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	371110	371180	1	+	2	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	371110	371180	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	371181	371272	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	371273	371331	1	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	371273	371331	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	371332	371480	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	371481	371637	1	+	1	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	371481	371637	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	371638	371771	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	371772	371824	1	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	371772	371824	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	371825	371897	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	371898	371996	1	+	1	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	371898	371996	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	371997	372095	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	372096	372210	1	+	1	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	372096	372210	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	372211	372287	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	372288	372410	1	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	372288	372410	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	intron	372411	372483	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	CDS	372484	372636	1	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	exon	372484	372636	.	+	.	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
Ledus.S1	AUGUSTUS	stop_codon	372637	372639	.	+	0	transcript_id "Ledus.S1G002600.t1"; gene_id "Ledus.S1G002600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4254.t1 is derived from g1690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15779554	15781192	.	+	.	Ledus.S1G167500
Ledus.S1	AUGUSTUS	transcript	15779554	15781192	.	+	.	transcript_id "Ledus.S1G167500.t1"; gene_id "Ledus.S1G167500"
Ledus.S1	AUGUSTUS	start_codon	15779554	15779556	.	+	0	transcript_id "Ledus.S1G167500.t1"; gene_id "Ledus.S1G167500"
Ledus.S1	AUGUSTUS	CDS	15779554	15780850	0.93	+	0	transcript_id "Ledus.S1G167500.t1"; gene_id "Ledus.S1G167500"
Ledus.S1	AUGUSTUS	exon	15779554	15780850	.	+	.	transcript_id "Ledus.S1G167500.t1"; gene_id "Ledus.S1G167500"
Ledus.S1	AUGUSTUS	intron	15780851	15780992	.	+	.	transcript_id "Ledus.S1G167500.t1"; gene_id "Ledus.S1G167500"
Ledus.S1	AUGUSTUS	CDS	15780993	15781192	1	+	2	transcript_id "Ledus.S1G167500.t1"; gene_id "Ledus.S1G167500"
Ledus.S1	AUGUSTUS	exon	15780993	15781192	.	+	.	transcript_id "Ledus.S1G167500.t1"; gene_id "Ledus.S1G167500"
Ledus.S1	AUGUSTUS	stop_codon	15781193	15781195	.	+	0	transcript_id "Ledus.S1G167500.t1"; gene_id "Ledus.S1G167500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5783.t1 is derived from g3225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26747611	26747988	.	-	.	Ledus.S1G320400
Ledus.S1	AUGUSTUS	transcript	26747611	26747988	.	-	.	transcript_id "Ledus.S1G320400.t1"; gene_id "Ledus.S1G320400"
Ledus.S1	AUGUSTUS	stop_codon	26747608	26747610	.	-	0	transcript_id "Ledus.S1G320400.t1"; gene_id "Ledus.S1G320400"
Ledus.S1	AUGUSTUS	CDS	26747611	26747988	0.94	-	0	transcript_id "Ledus.S1G320400.t1"; gene_id "Ledus.S1G320400"
Ledus.S1	AUGUSTUS	exon	26747611	26747988	.	-	.	transcript_id "Ledus.S1G320400.t1"; gene_id "Ledus.S1G320400"
Ledus.S1	AUGUSTUS	start_codon	26747986	26747988	.	-	0	transcript_id "Ledus.S1G320400.t1"; gene_id "Ledus.S1G320400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5555.t1 is derived from g2994.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25089425	25090646	.	+	.	Ledus.S1G297600
Ledus.S1	AUGUSTUS	transcript	25089425	25090646	.	+	.	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	start_codon	25089425	25089427	.	+	0	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	CDS	25089425	25089642	0.56	+	0	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	exon	25089425	25089642	.	+	.	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	intron	25089643	25089727	.	+	.	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	CDS	25089728	25089919	1	+	1	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	exon	25089728	25089919	.	+	.	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	intron	25089920	25090001	.	+	.	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	CDS	25090002	25090147	1	+	1	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	exon	25090002	25090147	.	+	.	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	intron	25090148	25090237	.	+	.	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	CDS	25090238	25090388	1	+	2	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	exon	25090238	25090388	.	+	.	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	intron	25090389	25090480	.	+	.	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	CDS	25090481	25090646	1	+	1	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	exon	25090481	25090646	.	+	.	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
Ledus.S1	AUGUSTUS	stop_codon	25090647	25090649	.	+	0	transcript_id "Ledus.S1G297600.t1"; gene_id "Ledus.S1G297600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4611.t1 is derived from g2048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18176644	18185058	.	-	.	Ledus.S1G203200
Ledus.S1	AUGUSTUS	transcript	18176644	18185058	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	stop_codon	18176641	18176643	.	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18176644	18176715	0.99	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18176644	18176715	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18176716	18176850	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18176851	18176989	0.99	-	1	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18176851	18176989	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18176990	18177096	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18177097	18177158	1	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18177097	18177158	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18177159	18177291	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18177292	18177430	1	-	1	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18177292	18177430	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18177431	18177525	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18177526	18178480	1	-	2	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18177526	18178480	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18178481	18178565	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18178566	18178966	0.85	-	1	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18178566	18178966	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18178967	18179076	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18179077	18179225	0.61	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18179077	18179225	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18179226	18179420	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18179421	18179678	0.63	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18179421	18179678	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18179679	18179784	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18179785	18179907	0.99	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18179785	18179907	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18179908	18180000	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18180001	18180147	1	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18180001	18180147	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18180148	18180359	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18180360	18180503	1	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18180360	18180503	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18180504	18180619	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18180620	18180743	1	-	1	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18180620	18180743	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18180744	18181366	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18181367	18181473	1	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18181367	18181473	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18181474	18181955	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18181956	18182096	1	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18181956	18182096	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18182097	18182285	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18182286	18182369	1	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18182286	18182369	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18182370	18182482	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18182483	18182905	1	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18182483	18182905	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18182906	18183069	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18183070	18183148	1	-	1	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18183070	18183148	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18183149	18183527	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18183528	18183565	1	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18183528	18183565	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18183566	18183761	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18183762	18184583	0.96	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18183762	18184583	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	intron	18184584	18184710	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	CDS	18184711	18185058	0.98	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	exon	18184711	18185058	.	-	.	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
Ledus.S1	AUGUSTUS	start_codon	18185056	18185058	.	-	0	transcript_id "Ledus.S1G203200.t1"; gene_id "Ledus.S1G203200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10983.t1 is derived from g4601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	994675	997392	.	+	.	Ledus.S4G013900
Ledus.S4	AUGUSTUS	transcript	994675	997392	.	+	.	transcript_id "Ledus.S4G013900.t1"; gene_id "Ledus.S4G013900"
Ledus.S4	AUGUSTUS	start_codon	994675	994677	.	+	0	transcript_id "Ledus.S4G013900.t1"; gene_id "Ledus.S4G013900"
Ledus.S4	AUGUSTUS	CDS	994675	994809	0.24	+	0	transcript_id "Ledus.S4G013900.t1"; gene_id "Ledus.S4G013900"
Ledus.S4	AUGUSTUS	exon	994675	994809	.	+	.	transcript_id "Ledus.S4G013900.t1"; gene_id "Ledus.S4G013900"
Ledus.S4	AUGUSTUS	intron	994810	994907	.	+	.	transcript_id "Ledus.S4G013900.t1"; gene_id "Ledus.S4G013900"
Ledus.S4	AUGUSTUS	CDS	994908	995348	0.52	+	0	transcript_id "Ledus.S4G013900.t1"; gene_id "Ledus.S4G013900"
Ledus.S4	AUGUSTUS	exon	994908	995348	.	+	.	transcript_id "Ledus.S4G013900.t1"; gene_id "Ledus.S4G013900"
Ledus.S4	AUGUSTUS	intron	995349	995436	.	+	.	transcript_id "Ledus.S4G013900.t1"; gene_id "Ledus.S4G013900"
Ledus.S4	AUGUSTUS	CDS	995437	997392	0.97	+	0	transcript_id "Ledus.S4G013900.t1"; gene_id "Ledus.S4G013900"
Ledus.S4	AUGUSTUS	exon	995437	997392	.	+	.	transcript_id "Ledus.S4G013900.t1"; gene_id "Ledus.S4G013900"
Ledus.S4	AUGUSTUS	stop_codon	997393	997395	.	+	0	transcript_id "Ledus.S4G013900.t1"; gene_id "Ledus.S4G013900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5230.t1 is derived from g2669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22609990	22611366	.	-	.	Ledus.S1G265100
Ledus.S1	AUGUSTUS	transcript	22609990	22611366	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	stop_codon	22609987	22609989	.	-	0	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	CDS	22609990	22610035	1	-	1	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	exon	22609990	22610035	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	intron	22610036	22610180	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	CDS	22610181	22610275	1	-	0	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	exon	22610181	22610275	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	intron	22610276	22610461	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	CDS	22610462	22610546	1	-	1	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	exon	22610462	22610546	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	intron	22610547	22610641	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	CDS	22610642	22610731	1	-	1	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	exon	22610642	22610731	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	intron	22610732	22610830	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	CDS	22610831	22610938	1	-	1	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	exon	22610831	22610938	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	intron	22610939	22611090	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	CDS	22611091	22611272	1	-	0	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	exon	22611091	22611272	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	intron	22611273	22611360	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	CDS	22611361	22611366	0.99	-	0	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	exon	22611361	22611366	.	-	.	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
Ledus.S1	AUGUSTUS	start_codon	22611364	22611366	.	-	0	transcript_id "Ledus.S1G265100.t1"; gene_id "Ledus.S1G265100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6626.t1 is derived from g4069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32785799	32786529	.	+	.	Ledus.S1G404700
Ledus.S1	AUGUSTUS	transcript	32785799	32786529	.	+	.	transcript_id "Ledus.S1G404700.t1"; gene_id "Ledus.S1G404700"
Ledus.S1	AUGUSTUS	start_codon	32785799	32785801	.	+	0	transcript_id "Ledus.S1G404700.t1"; gene_id "Ledus.S1G404700"
Ledus.S1	AUGUSTUS	CDS	32785799	32786149	0.98	+	0	transcript_id "Ledus.S1G404700.t1"; gene_id "Ledus.S1G404700"
Ledus.S1	AUGUSTUS	exon	32785799	32786149	.	+	.	transcript_id "Ledus.S1G404700.t1"; gene_id "Ledus.S1G404700"
Ledus.S1	AUGUSTUS	intron	32786150	32786252	.	+	.	transcript_id "Ledus.S1G404700.t1"; gene_id "Ledus.S1G404700"
Ledus.S1	AUGUSTUS	CDS	32786253	32786369	1	+	0	transcript_id "Ledus.S1G404700.t1"; gene_id "Ledus.S1G404700"
Ledus.S1	AUGUSTUS	exon	32786253	32786369	.	+	.	transcript_id "Ledus.S1G404700.t1"; gene_id "Ledus.S1G404700"
Ledus.S1	AUGUSTUS	intron	32786370	32786454	.	+	.	transcript_id "Ledus.S1G404700.t1"; gene_id "Ledus.S1G404700"
Ledus.S1	AUGUSTUS	CDS	32786455	32786529	1	+	0	transcript_id "Ledus.S1G404700.t1"; gene_id "Ledus.S1G404700"
Ledus.S1	AUGUSTUS	exon	32786455	32786529	.	+	.	transcript_id "Ledus.S1G404700.t1"; gene_id "Ledus.S1G404700"
Ledus.S1	AUGUSTUS	stop_codon	32786530	32786532	.	+	0	transcript_id "Ledus.S1G404700.t1"; gene_id "Ledus.S1G404700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9332.t1 is derived from g10362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6167509	6167754	.	-	.	Ledus.S3G080900
Ledus.S3	AUGUSTUS	transcript	6167509	6167754	.	-	.	transcript_id "Ledus.S3G080900.t1"; gene_id "Ledus.S3G080900"
Ledus.S3	AUGUSTUS	stop_codon	6167506	6167508	.	-	0	transcript_id "Ledus.S3G080900.t1"; gene_id "Ledus.S3G080900"
Ledus.S3	AUGUSTUS	CDS	6167509	6167754	0.45	-	0	transcript_id "Ledus.S3G080900.t1"; gene_id "Ledus.S3G080900"
Ledus.S3	AUGUSTUS	exon	6167509	6167754	.	-	.	transcript_id "Ledus.S3G080900.t1"; gene_id "Ledus.S3G080900"
Ledus.S3	AUGUSTUS	start_codon	6167752	6167754	.	-	0	transcript_id "Ledus.S3G080900.t1"; gene_id "Ledus.S3G080900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9341.t1 is derived from g10371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6247114	6250468	.	-	.	Ledus.S3G081800
Ledus.S3	AUGUSTUS	transcript	6247114	6250468	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	stop_codon	6247111	6247113	.	-	0	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	CDS	6247114	6247401	1	-	0	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	exon	6247114	6247401	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	intron	6247402	6247480	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	CDS	6247481	6247726	1	-	0	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	exon	6247481	6247726	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	intron	6247727	6247815	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	CDS	6247816	6247969	0.34	-	1	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	exon	6247816	6247969	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	intron	6247970	6248047	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	CDS	6248048	6248263	1	-	1	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	exon	6248048	6248263	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	intron	6248264	6248359	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	CDS	6248360	6248458	1	-	1	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	exon	6248360	6248458	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	intron	6248459	6248536	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	CDS	6248537	6249110	1	-	2	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	exon	6248537	6249110	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	intron	6249111	6249189	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	CDS	6249190	6249407	1	-	1	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	exon	6249190	6249407	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	intron	6249408	6249492	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	CDS	6249493	6249676	1	-	2	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	exon	6249493	6249676	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	intron	6249677	6249758	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	CDS	6249759	6250142	1	-	2	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	exon	6249759	6250142	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	intron	6250143	6250230	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	CDS	6250231	6250468	0.61	-	0	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	exon	6250231	6250468	.	-	.	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
Ledus.S3	AUGUSTUS	start_codon	6250466	6250468	.	-	0	transcript_id "Ledus.S3G081800.t1"; gene_id "Ledus.S3G081800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10350.t1 is derived from g11380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14359861	14362953	.	-	.	Ledus.S3G182700
Ledus.S3	AUGUSTUS	transcript	14359861	14362953	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	stop_codon	14359858	14359860	.	-	0	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	CDS	14359861	14360101	1	-	1	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	exon	14359861	14360101	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	intron	14360102	14360210	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	CDS	14360211	14360290	0.86	-	0	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	exon	14360211	14360290	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	intron	14360291	14360431	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	CDS	14360432	14360648	1	-	1	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	exon	14360432	14360648	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	intron	14360649	14360746	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	CDS	14360747	14361108	1	-	0	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	exon	14360747	14361108	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	intron	14361109	14361191	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	CDS	14361192	14361275	1	-	0	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	exon	14361192	14361275	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	intron	14361276	14361397	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	CDS	14361398	14361496	0.97	-	0	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	exon	14361398	14361496	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	intron	14361497	14361612	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	CDS	14361613	14362953	0.58	-	0	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	exon	14361613	14362953	.	-	.	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
Ledus.S3	AUGUSTUS	start_codon	14362951	14362953	.	-	0	transcript_id "Ledus.S3G182700.t1"; gene_id "Ledus.S3G182700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7009.t1 is derived from g6540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	783251	790792	.	+	.	Ledus.C7G007000
Ledus.C7	AUGUSTUS	transcript	783251	790792	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	start_codon	783251	783253	.	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	783251	783533	0.65	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	783251	783533	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	783534	784047	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	784048	784118	1	+	2	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	784048	784118	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	784119	784263	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	784264	784398	1	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	784264	784398	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	784399	784530	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	784531	784589	1	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	784531	784589	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	784590	784723	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	784724	784760	1	+	1	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	784724	784760	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	784761	784948	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	784949	785074	1	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	784949	785074	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	785075	785290	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	785291	785380	0.95	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	785291	785380	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	785381	785492	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	785493	785558	0.97	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	785493	785558	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	785559	785859	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	785860	785916	0.99	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	785860	785916	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	785917	786023	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	786024	786089	1	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	786024	786089	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	786090	786261	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	786262	786369	1	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	786262	786369	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	786370	786575	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	786576	786656	1	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	786576	786656	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	786657	786815	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	786816	786865	1	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	786816	786865	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	786866	787021	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	787022	787187	0.92	+	1	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	787022	787187	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	787188	787307	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	787308	787790	0.63	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	787308	787790	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	787791	787898	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	787899	788081	1	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	787899	788081	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	788082	788169	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	788170	788275	1	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	788170	788275	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	788276	788362	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	788363	788533	1	+	2	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	788363	788533	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	788534	788812	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	788813	788892	1	+	2	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	788813	788892	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	788893	789019	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	789020	789247	0.98	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	789020	789247	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	789248	789374	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	789375	789590	0.98	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	789375	789590	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	789591	789704	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	789705	789862	1	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	789705	789862	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	789863	790031	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	790032	790143	1	+	1	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	790032	790143	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	790144	790238	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	790239	790259	0.83	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	790239	790259	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	790260	790359	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	790360	790435	0.84	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	790360	790435	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	790436	790518	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	790519	790576	0.62	+	2	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	790519	790576	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	intron	790577	790719	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	CDS	790720	790792	0.47	+	1	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	exon	790720	790792	.	+	.	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
Ledus.C7	AUGUSTUS	stop_codon	790793	790795	.	+	0	transcript_id "Ledus.C7G007000.t1"; gene_id "Ledus.C7G007000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9891.t1 is derived from g10921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10985855	10988810	.	+	.	Ledus.S3G136800
Ledus.S3	AUGUSTUS	transcript	10985855	10988810	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	start_codon	10985855	10985857	.	+	0	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10985855	10985927	0.79	+	0	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10985855	10985927	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	intron	10985928	10986027	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10986028	10986265	1	+	2	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10986028	10986265	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	intron	10986266	10986552	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10986553	10986637	0.59	+	1	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10986553	10986637	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	intron	10986638	10986750	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10986751	10986944	0.6	+	0	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10986751	10986944	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	intron	10986945	10987035	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10987036	10987165	1	+	1	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10987036	10987165	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	intron	10987166	10987357	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10987358	10987416	1	+	0	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10987358	10987416	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	intron	10987417	10987534	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10987535	10987603	1	+	1	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10987535	10987603	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	intron	10987604	10987806	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10987807	10987853	1	+	1	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10987807	10987853	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	intron	10987854	10987945	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10987946	10988032	1	+	2	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10987946	10988032	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	intron	10988033	10988184	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10988185	10988249	1	+	2	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10988185	10988249	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	intron	10988250	10988340	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10988341	10988424	1	+	0	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10988341	10988424	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	intron	10988425	10988553	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10988554	10988619	0.99	+	0	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10988554	10988619	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	intron	10988620	10988729	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	CDS	10988730	10988810	0.97	+	0	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	exon	10988730	10988810	.	+	.	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
Ledus.S3	AUGUSTUS	stop_codon	10988811	10988813	.	+	0	transcript_id "Ledus.S3G136800.t1"; gene_id "Ledus.S3G136800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9534.t1 is derived from g10564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7617191	7617781	.	-	.	Ledus.S3G101100
Ledus.S3	AUGUSTUS	transcript	7617191	7617781	.	-	.	transcript_id "Ledus.S3G101100.t1"; gene_id "Ledus.S3G101100"
Ledus.S3	AUGUSTUS	stop_codon	7617188	7617190	.	-	0	transcript_id "Ledus.S3G101100.t1"; gene_id "Ledus.S3G101100"
Ledus.S3	AUGUSTUS	CDS	7617191	7617781	0.65	-	0	transcript_id "Ledus.S3G101100.t1"; gene_id "Ledus.S3G101100"
Ledus.S3	AUGUSTUS	exon	7617191	7617781	.	-	.	transcript_id "Ledus.S3G101100.t1"; gene_id "Ledus.S3G101100"
Ledus.S3	AUGUSTUS	start_codon	7617779	7617781	.	-	0	transcript_id "Ledus.S3G101100.t1"; gene_id "Ledus.S3G101100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7111.t1 is derived from g6642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1613208	1613414	.	-	.	Ledus.C7G017200
Ledus.C7	AUGUSTUS	transcript	1613208	1613414	.	-	.	transcript_id "Ledus.C7G017200.t1"; gene_id "Ledus.C7G017200"
Ledus.C7	AUGUSTUS	stop_codon	1613205	1613207	.	-	0	transcript_id "Ledus.C7G017200.t1"; gene_id "Ledus.C7G017200"
Ledus.C7	AUGUSTUS	CDS	1613208	1613414	0.74	-	0	transcript_id "Ledus.C7G017200.t1"; gene_id "Ledus.C7G017200"
Ledus.C7	AUGUSTUS	exon	1613208	1613414	.	-	.	transcript_id "Ledus.C7G017200.t1"; gene_id "Ledus.C7G017200"
Ledus.C7	AUGUSTUS	start_codon	1613412	1613414	.	-	0	transcript_id "Ledus.C7G017200.t1"; gene_id "Ledus.C7G017200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3227.t1 is derived from g662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6997394	6999087	.	-	.	Ledus.S1G064800
Ledus.S1	AUGUSTUS	transcript	6997394	6999087	.	-	.	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	stop_codon	6997391	6997393	.	-	0	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	CDS	6997394	6997636	0.98	-	0	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	exon	6997394	6997636	.	-	.	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	intron	6997637	6997747	.	-	.	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	CDS	6997748	6997974	1	-	2	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	exon	6997748	6997974	.	-	.	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	intron	6997975	6998111	.	-	.	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	CDS	6998112	6998330	1	-	2	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	exon	6998112	6998330	.	-	.	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	intron	6998331	6998554	.	-	.	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	CDS	6998555	6998586	0.98	-	1	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	exon	6998555	6998586	.	-	.	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	intron	6998587	6998665	.	-	.	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	CDS	6998666	6999087	0.99	-	0	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	exon	6998666	6999087	.	-	.	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
Ledus.S1	AUGUSTUS	start_codon	6999085	6999087	.	-	0	transcript_id "Ledus.S1G064800.t1"; gene_id "Ledus.S1G064800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8676.t1 is derived from g9706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1323665	1324240	.	-	.	Ledus.S3G015300
Ledus.S3	AUGUSTUS	transcript	1323665	1324240	.	-	.	transcript_id "Ledus.S3G015300.t1"; gene_id "Ledus.S3G015300"
Ledus.S3	AUGUSTUS	stop_codon	1323662	1323664	.	-	0	transcript_id "Ledus.S3G015300.t1"; gene_id "Ledus.S3G015300"
Ledus.S3	AUGUSTUS	CDS	1323665	1324240	0.8	-	0	transcript_id "Ledus.S3G015300.t1"; gene_id "Ledus.S3G015300"
Ledus.S3	AUGUSTUS	exon	1323665	1324240	.	-	.	transcript_id "Ledus.S3G015300.t1"; gene_id "Ledus.S3G015300"
Ledus.S3	AUGUSTUS	start_codon	1324238	1324240	.	-	0	transcript_id "Ledus.S3G015300.t1"; gene_id "Ledus.S3G015300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12171.t1 is derived from g5790.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10126075	10129298	.	-	.	Ledus.S4G132700
Ledus.S4	AUGUSTUS	transcript	10126075	10129298	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	stop_codon	10126072	10126074	.	-	0	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10126075	10126207	1	-	1	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10126075	10126207	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10126208	10126347	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10126348	10126432	1	-	2	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10126348	10126432	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10126433	10126551	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10126552	10126648	1	-	0	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10126552	10126648	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10126649	10126766	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10126767	10126814	0.99	-	0	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10126767	10126814	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10126815	10126944	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10126945	10127040	1	-	0	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10126945	10127040	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10127041	10127164	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10127165	10127267	1	-	1	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10127165	10127267	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10127268	10127453	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10127454	10127547	1	-	2	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10127454	10127547	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10127548	10127679	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10127680	10127734	0.98	-	0	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10127680	10127734	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10127735	10127850	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10127851	10127958	0.93	-	0	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10127851	10127958	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10127959	10128134	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10128135	10128209	1	-	0	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10128135	10128209	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10128210	10128381	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10128382	10128451	1	-	1	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10128382	10128451	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10128452	10128543	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10128544	10128623	1	-	0	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10128544	10128623	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10128624	10128742	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10128743	10128947	1	-	1	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10128743	10128947	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10128948	10129035	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10129036	10129135	1	-	2	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10129036	10129135	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	intron	10129136	10129222	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	CDS	10129223	10129298	0.81	-	0	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	exon	10129223	10129298	.	-	.	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
Ledus.S4	AUGUSTUS	start_codon	10129296	10129298	.	-	0	transcript_id "Ledus.S4G132700.t1"; gene_id "Ledus.S4G132700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7732.t1 is derived from g12403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5609549	5611061	.	-	.	Ledus.S5G051000
Ledus.S5	AUGUSTUS	transcript	5609549	5611061	.	-	.	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	stop_codon	5609546	5609548	.	-	0	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	CDS	5609549	5609762	0.99	-	1	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	exon	5609549	5609762	.	-	.	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	intron	5609763	5609881	.	-	.	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	CDS	5609882	5610030	1	-	0	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	exon	5609882	5610030	.	-	.	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	intron	5610031	5610129	.	-	.	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	CDS	5610130	5610225	1	-	0	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	exon	5610130	5610225	.	-	.	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	intron	5610226	5610346	.	-	.	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	CDS	5610347	5610592	1	-	0	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	exon	5610347	5610592	.	-	.	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	intron	5610593	5610740	.	-	.	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	CDS	5610741	5611061	0.95	-	0	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	exon	5610741	5611061	.	-	.	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
Ledus.S5	AUGUSTUS	start_codon	5611059	5611061	.	-	0	transcript_id "Ledus.S5G051000.t1"; gene_id "Ledus.S5G051000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1881.t1 is derived from g8744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13155868	13158221	.	-	.	Ledus.S2G176300
Ledus.S2	AUGUSTUS	transcript	13155868	13158221	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	stop_codon	13155865	13155867	.	-	0	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	CDS	13155868	13155938	0.64	-	2	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	exon	13155868	13155938	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	intron	13155939	13156210	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	CDS	13156211	13156230	0.68	-	1	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	exon	13156211	13156230	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	intron	13156231	13156342	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	CDS	13156343	13156377	0.7	-	0	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	exon	13156343	13156377	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	intron	13156378	13156587	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	CDS	13156588	13156628	1	-	2	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	exon	13156588	13156628	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	intron	13156629	13156792	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	CDS	13156793	13157185	1	-	2	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	exon	13156793	13157185	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	intron	13157186	13157374	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	CDS	13157375	13157815	1	-	2	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	exon	13157375	13157815	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	intron	13157816	13157947	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	CDS	13157948	13157987	1	-	0	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	exon	13157948	13157987	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	intron	13157988	13158089	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	CDS	13158090	13158221	0.99	-	0	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	exon	13158090	13158221	.	-	.	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
Ledus.S2	AUGUSTUS	start_codon	13158219	13158221	.	-	0	transcript_id "Ledus.S2G176300.t1"; gene_id "Ledus.S2G176300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6008.t1 is derived from g3451.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28238953	28239813	.	+	.	Ledus.S1G342900
Ledus.S1	AUGUSTUS	transcript	28238953	28239813	.	+	.	transcript_id "Ledus.S1G342900.t1"; gene_id "Ledus.S1G342900"
Ledus.S1	AUGUSTUS	start_codon	28238953	28238955	.	+	0	transcript_id "Ledus.S1G342900.t1"; gene_id "Ledus.S1G342900"
Ledus.S1	AUGUSTUS	CDS	28238953	28239048	0.51	+	0	transcript_id "Ledus.S1G342900.t1"; gene_id "Ledus.S1G342900"
Ledus.S1	AUGUSTUS	exon	28238953	28239048	.	+	.	transcript_id "Ledus.S1G342900.t1"; gene_id "Ledus.S1G342900"
Ledus.S1	AUGUSTUS	intron	28239049	28239263	.	+	.	transcript_id "Ledus.S1G342900.t1"; gene_id "Ledus.S1G342900"
Ledus.S1	AUGUSTUS	CDS	28239264	28239427	0.46	+	0	transcript_id "Ledus.S1G342900.t1"; gene_id "Ledus.S1G342900"
Ledus.S1	AUGUSTUS	exon	28239264	28239427	.	+	.	transcript_id "Ledus.S1G342900.t1"; gene_id "Ledus.S1G342900"
Ledus.S1	AUGUSTUS	intron	28239428	28239596	.	+	.	transcript_id "Ledus.S1G342900.t1"; gene_id "Ledus.S1G342900"
Ledus.S1	AUGUSTUS	CDS	28239597	28239813	0.58	+	1	transcript_id "Ledus.S1G342900.t1"; gene_id "Ledus.S1G342900"
Ledus.S1	AUGUSTUS	exon	28239597	28239813	.	+	.	transcript_id "Ledus.S1G342900.t1"; gene_id "Ledus.S1G342900"
Ledus.S1	AUGUSTUS	stop_codon	28239814	28239816	.	+	0	transcript_id "Ledus.S1G342900.t1"; gene_id "Ledus.S1G342900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5715.t1 is derived from g3154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26175310	26176529	.	+	.	Ledus.S1G313600
Ledus.S1	AUGUSTUS	transcript	26175310	26176529	.	+	.	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	start_codon	26175310	26175312	.	+	0	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	CDS	26175310	26175322	0.86	+	0	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	exon	26175310	26175322	.	+	.	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	intron	26175323	26175400	.	+	.	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	CDS	26175401	26175491	0.55	+	2	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	exon	26175401	26175491	.	+	.	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	intron	26175492	26175599	.	+	.	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	CDS	26175600	26175748	0.47	+	1	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	exon	26175600	26175748	.	+	.	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	intron	26175749	26176215	.	+	.	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	CDS	26176216	26176311	0.93	+	2	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	exon	26176216	26176311	.	+	.	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	intron	26176312	26176380	.	+	.	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	CDS	26176381	26176529	0.69	+	2	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	exon	26176381	26176529	.	+	.	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
Ledus.S1	AUGUSTUS	stop_codon	26176530	26176532	.	+	0	transcript_id "Ledus.S1G313600.t1"; gene_id "Ledus.S1G313600"
# This transcript jg5966.t2 is derived from g3409.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5967.t1 is derived from g3410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28074098	28074454	.	-	.	Ledus.S1G338800
Ledus.S1	AUGUSTUS	transcript	28074098	28074454	.	-	.	transcript_id "Ledus.S1G338800.t1"; gene_id "Ledus.S1G338800"
Ledus.S1	AUGUSTUS	stop_codon	28074095	28074097	.	-	0	transcript_id "Ledus.S1G338800.t1"; gene_id "Ledus.S1G338800"
Ledus.S1	AUGUSTUS	CDS	28074098	28074454	0.49	-	0	transcript_id "Ledus.S1G338800.t1"; gene_id "Ledus.S1G338800"
Ledus.S1	AUGUSTUS	exon	28074098	28074454	.	-	.	transcript_id "Ledus.S1G338800.t1"; gene_id "Ledus.S1G338800"
Ledus.S1	AUGUSTUS	start_codon	28074452	28074454	.	-	0	transcript_id "Ledus.S1G338800.t1"; gene_id "Ledus.S1G338800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg12600.t1 is derived from g6222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13101356	13106063	.	+	.	Ledus.S4G175600
Ledus.S4	AUGUSTUS	transcript	13101356	13106063	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	start_codon	13101356	13101358	.	+	0	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13101356	13101433	0.86	+	0	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13101356	13101433	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13101434	13101527	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13101528	13101896	0.99	+	0	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13101528	13101896	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13101897	13102079	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13102080	13102248	0.97	+	0	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13102080	13102248	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13102249	13102449	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13102450	13102619	1	+	2	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13102450	13102619	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13102620	13102719	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13102720	13102853	1	+	0	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13102720	13102853	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13102854	13103085	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103086	13103096	1	+	1	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103086	13103096	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103097	13103255	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103256	13103359	1	+	2	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103256	13103359	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103360	13103479	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103480	13103554	0.99	+	0	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103480	13103554	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103555	13103671	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103672	13103748	1	+	0	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103672	13103748	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103749	13103866	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103867	13103969	0.78	+	1	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103867	13103969	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103970	13104058	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13104059	13104165	1	+	0	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13104059	13104165	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13104166	13104618	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13104619	13104762	0.7	+	1	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13104619	13104762	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13104763	13104919	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13104920	13104995	0.92	+	1	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13104920	13104995	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13104996	13105098	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13105099	13105165	0.98	+	0	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13105099	13105165	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13105166	13105318	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13105319	13105366	0.97	+	2	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13105319	13105366	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13105367	13105629	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13105630	13105726	0.95	+	2	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13105630	13105726	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13105727	13105885	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13105886	13106063	0.9	+	1	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13105886	13106063	.	+	.	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	stop_codon	13106064	13106066	.	+	0	transcript_id "Ledus.S4G175600.t1"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	transcript	13101356	13106063	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	start_codon	13101356	13101358	.	+	0	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13101356	13101433	0.85	+	0	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13101356	13101433	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13101434	13101527	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13101528	13101896	0.99	+	0	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13101528	13101896	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13101897	13102079	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13102080	13102248	0.95	+	0	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13102080	13102248	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13102249	13102449	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13102450	13102619	1	+	2	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13102450	13102619	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13102620	13102719	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13102720	13102853	1	+	0	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13102720	13102853	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13102854	13103085	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103086	13103096	1	+	1	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103086	13103096	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103097	13103255	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103256	13103359	1	+	2	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103256	13103359	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103360	13103479	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103480	13103554	0.99	+	0	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103480	13103554	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103555	13103671	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103672	13103748	1	+	0	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103672	13103748	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103749	13103866	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103867	13103984	0.89	+	1	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103867	13103984	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103985	13104058	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13104059	13104165	1	+	0	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13104059	13104165	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13104166	13104618	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13104619	13104762	0.75	+	1	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13104619	13104762	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13104763	13104919	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13104920	13104995	0.91	+	1	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13104920	13104995	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13104996	13105098	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13105099	13105223	0.86	+	0	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13105099	13105223	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13105224	13105318	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13105319	13105489	0.52	+	1	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13105319	13105489	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13105490	13105648	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13105649	13105726	0.86	+	1	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13105649	13105726	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13105727	13105885	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13105886	13106063	0.87	+	1	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13105886	13106063	.	+	.	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	stop_codon	13106064	13106066	.	+	0	transcript_id "Ledus.S4G175600.t2"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	transcript	13101356	13106063	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	start_codon	13101356	13101358	.	+	0	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13101356	13101433	0.87	+	0	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13101356	13101433	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13101434	13101527	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13101528	13101896	1	+	0	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13101528	13101896	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13101897	13102079	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13102080	13102248	0.99	+	0	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13102080	13102248	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13102249	13102449	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13102450	13102619	1	+	2	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13102450	13102619	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13102620	13102719	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13102720	13102853	1	+	0	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13102720	13102853	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13102854	13103085	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103086	13103096	1	+	1	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103086	13103096	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103097	13103255	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103256	13103359	0.99	+	2	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103256	13103359	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103360	13103479	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103480	13103554	0.95	+	0	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103480	13103554	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103555	13103671	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103672	13103748	1	+	0	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103672	13103748	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103749	13103866	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13103867	13103969	0.92	+	1	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13103867	13103969	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13103970	13104058	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13104059	13104165	1	+	0	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13104059	13104165	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13104166	13104618	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13104619	13104762	0.68	+	1	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13104619	13104762	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13104763	13104919	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13104920	13104995	0.86	+	1	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13104920	13104995	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13104996	13105098	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13105099	13105223	0.86	+	0	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13105099	13105223	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13105224	13105318	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13105319	13105489	0.56	+	1	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13105319	13105489	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13105490	13105648	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13105649	13105726	0.87	+	1	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13105649	13105726	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	intron	13105727	13105885	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	CDS	13105886	13106063	0.9	+	1	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	exon	13105886	13106063	.	+	.	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
Ledus.S4	AUGUSTUS	stop_codon	13106064	13106066	.	+	0	transcript_id "Ledus.S4G175600.t3"; gene_id "Ledus.S4G175600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5177.t1 is derived from g2616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22163890	22165464	.	+	.	Ledus.S1G259800
Ledus.S1	AUGUSTUS	transcript	22163890	22165464	.	+	.	transcript_id "Ledus.S1G259800.t1"; gene_id "Ledus.S1G259800"
Ledus.S1	AUGUSTUS	start_codon	22163890	22163892	.	+	0	transcript_id "Ledus.S1G259800.t1"; gene_id "Ledus.S1G259800"
Ledus.S1	AUGUSTUS	CDS	22163890	22165464	1	+	0	transcript_id "Ledus.S1G259800.t1"; gene_id "Ledus.S1G259800"
Ledus.S1	AUGUSTUS	exon	22163890	22165464	.	+	.	transcript_id "Ledus.S1G259800.t1"; gene_id "Ledus.S1G259800"
Ledus.S1	AUGUSTUS	stop_codon	22165465	22165467	.	+	0	transcript_id "Ledus.S1G259800.t1"; gene_id "Ledus.S1G259800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg207.t1 is derived from g7068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	885818	886868	.	-	.	Ledus.S2G008900
Ledus.S2	AUGUSTUS	transcript	885818	886868	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	stop_codon	885815	885817	.	-	0	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	CDS	885818	885842	0.24	-	1	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	exon	885818	885842	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	intron	885843	886038	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	CDS	886039	886101	0.35	-	1	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	exon	886039	886101	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	intron	886102	886207	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	CDS	886208	886252	0.42	-	1	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	exon	886208	886252	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	intron	886253	886329	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	CDS	886330	886378	1	-	2	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	exon	886330	886378	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	intron	886379	886470	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	CDS	886471	886537	1	-	0	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	exon	886471	886537	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	intron	886538	886619	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	CDS	886620	886718	1	-	0	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	exon	886620	886718	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	intron	886719	886814	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	CDS	886815	886868	0.97	-	0	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	exon	886815	886868	.	-	.	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
Ledus.S2	AUGUSTUS	start_codon	886866	886868	.	-	0	transcript_id "Ledus.S2G008900.t1"; gene_id "Ledus.S2G008900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9559.t1 is derived from g10589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7771971	7772847	.	-	.	Ledus.S3G103600
Ledus.S3	AUGUSTUS	transcript	7771971	7772847	.	-	.	transcript_id "Ledus.S3G103600.t1"; gene_id "Ledus.S3G103600"
Ledus.S3	AUGUSTUS	stop_codon	7771968	7771970	.	-	0	transcript_id "Ledus.S3G103600.t1"; gene_id "Ledus.S3G103600"
Ledus.S3	AUGUSTUS	CDS	7771971	7772077	0.92	-	2	transcript_id "Ledus.S3G103600.t1"; gene_id "Ledus.S3G103600"
Ledus.S3	AUGUSTUS	exon	7771971	7772077	.	-	.	transcript_id "Ledus.S3G103600.t1"; gene_id "Ledus.S3G103600"
Ledus.S3	AUGUSTUS	intron	7772078	7772423	.	-	.	transcript_id "Ledus.S3G103600.t1"; gene_id "Ledus.S3G103600"
Ledus.S3	AUGUSTUS	CDS	7772424	7772847	0.4	-	0	transcript_id "Ledus.S3G103600.t1"; gene_id "Ledus.S3G103600"
Ledus.S3	AUGUSTUS	exon	7772424	7772847	.	-	.	transcript_id "Ledus.S3G103600.t1"; gene_id "Ledus.S3G103600"
Ledus.S3	AUGUSTUS	start_codon	7772845	7772847	.	-	0	transcript_id "Ledus.S3G103600.t1"; gene_id "Ledus.S3G103600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1993.t1 is derived from g8856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14108590	14110524	.	-	.	Ledus.S2G187500
Ledus.S2	AUGUSTUS	transcript	14108590	14110524	.	-	.	transcript_id "Ledus.S2G187500.t1"; gene_id "Ledus.S2G187500"
Ledus.S2	AUGUSTUS	stop_codon	14108587	14108589	.	-	0	transcript_id "Ledus.S2G187500.t1"; gene_id "Ledus.S2G187500"
Ledus.S2	AUGUSTUS	CDS	14108590	14108625	0.6	-	0	transcript_id "Ledus.S2G187500.t1"; gene_id "Ledus.S2G187500"
Ledus.S2	AUGUSTUS	exon	14108590	14108625	.	-	.	transcript_id "Ledus.S2G187500.t1"; gene_id "Ledus.S2G187500"
Ledus.S2	AUGUSTUS	intron	14108626	14108841	.	-	.	transcript_id "Ledus.S2G187500.t1"; gene_id "Ledus.S2G187500"
Ledus.S2	AUGUSTUS	CDS	14108842	14110524	0.42	-	0	transcript_id "Ledus.S2G187500.t1"; gene_id "Ledus.S2G187500"
Ledus.S2	AUGUSTUS	exon	14108842	14110524	.	-	.	transcript_id "Ledus.S2G187500.t1"; gene_id "Ledus.S2G187500"
Ledus.S2	AUGUSTUS	start_codon	14110522	14110524	.	-	0	transcript_id "Ledus.S2G187500.t1"; gene_id "Ledus.S2G187500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2436.t1 is derived from g9299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18106962	18108869	.	-	.	Ledus.S2G231800
Ledus.S2	AUGUSTUS	transcript	18106962	18108869	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	stop_codon	18106959	18106961	.	-	0	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18106962	18107105	1	-	0	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18106962	18107105	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18107106	18107186	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18107187	18107319	1	-	1	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18107187	18107319	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18107320	18107402	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18107403	18107479	1	-	0	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18107403	18107479	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18107480	18107579	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18107580	18107656	0.97	-	2	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18107580	18107656	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18107657	18107765	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18107766	18108014	0.91	-	2	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18107766	18108014	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18108015	18108125	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18108126	18108185	0.94	-	2	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18108126	18108185	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18108186	18108267	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18108268	18108471	1	-	2	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18108268	18108471	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18108472	18108562	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18108563	18108869	0.91	-	0	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18108563	18108869	.	-	.	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	start_codon	18108867	18108869	.	-	0	transcript_id "Ledus.S2G231800.t1"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	transcript	18106962	18108869	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	stop_codon	18106959	18106961	.	-	0	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18106962	18107105	0.99	-	0	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18106962	18107105	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18107106	18107186	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18107187	18107319	1	-	1	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18107187	18107319	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18107320	18107402	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18107403	18107489	0.94	-	1	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18107403	18107489	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18107490	18107579	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18107580	18107598	0.82	-	2	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18107580	18107598	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18107599	18107765	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18107766	18108014	0.82	-	2	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18107766	18108014	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18108015	18108125	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18108126	18108185	0.97	-	2	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18108126	18108185	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18108186	18108267	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18108268	18108471	1	-	2	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18108268	18108471	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	intron	18108472	18108562	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	CDS	18108563	18108869	0.82	-	0	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	exon	18108563	18108869	.	-	.	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
Ledus.S2	AUGUSTUS	start_codon	18108867	18108869	.	-	0	transcript_id "Ledus.S2G231800.t2"; gene_id "Ledus.S2G231800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2737.t1 is derived from g171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2710936	2711142	.	+	.	Ledus.S1G015800
Ledus.S1	AUGUSTUS	transcript	2710936	2711142	.	+	.	transcript_id "Ledus.S1G015800.t1"; gene_id "Ledus.S1G015800"
Ledus.S1	AUGUSTUS	start_codon	2710936	2710938	.	+	0	transcript_id "Ledus.S1G015800.t1"; gene_id "Ledus.S1G015800"
Ledus.S1	AUGUSTUS	CDS	2710936	2711142	0.64	+	0	transcript_id "Ledus.S1G015800.t1"; gene_id "Ledus.S1G015800"
Ledus.S1	AUGUSTUS	exon	2710936	2711142	.	+	.	transcript_id "Ledus.S1G015800.t1"; gene_id "Ledus.S1G015800"
Ledus.S1	AUGUSTUS	stop_codon	2711143	2711145	.	+	0	transcript_id "Ledus.S1G015800.t1"; gene_id "Ledus.S1G015800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9941.t1 is derived from g10971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11369469	11370011	.	+	.	Ledus.S3G141800
Ledus.S3	AUGUSTUS	transcript	11369469	11370011	.	+	.	transcript_id "Ledus.S3G141800.t1"; gene_id "Ledus.S3G141800"
Ledus.S3	AUGUSTUS	start_codon	11369469	11369471	.	+	0	transcript_id "Ledus.S3G141800.t1"; gene_id "Ledus.S3G141800"
Ledus.S3	AUGUSTUS	CDS	11369469	11369621	0.31	+	0	transcript_id "Ledus.S3G141800.t1"; gene_id "Ledus.S3G141800"
Ledus.S3	AUGUSTUS	exon	11369469	11369621	.	+	.	transcript_id "Ledus.S3G141800.t1"; gene_id "Ledus.S3G141800"
Ledus.S3	AUGUSTUS	intron	11369622	11369693	.	+	.	transcript_id "Ledus.S3G141800.t1"; gene_id "Ledus.S3G141800"
Ledus.S3	AUGUSTUS	CDS	11369694	11370011	0.67	+	0	transcript_id "Ledus.S3G141800.t1"; gene_id "Ledus.S3G141800"
Ledus.S3	AUGUSTUS	exon	11369694	11370011	.	+	.	transcript_id "Ledus.S3G141800.t1"; gene_id "Ledus.S3G141800"
Ledus.S3	AUGUSTUS	stop_codon	11370012	11370014	.	+	0	transcript_id "Ledus.S3G141800.t1"; gene_id "Ledus.S3G141800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1661.t1 is derived from g8522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11757287	11757769	.	-	.	Ledus.S2G154300
Ledus.S2	AUGUSTUS	transcript	11757287	11757769	.	-	.	transcript_id "Ledus.S2G154300.t1"; gene_id "Ledus.S2G154300"
Ledus.S2	AUGUSTUS	stop_codon	11757284	11757286	.	-	0	transcript_id "Ledus.S2G154300.t1"; gene_id "Ledus.S2G154300"
Ledus.S2	AUGUSTUS	CDS	11757287	11757769	1	-	0	transcript_id "Ledus.S2G154300.t1"; gene_id "Ledus.S2G154300"
Ledus.S2	AUGUSTUS	exon	11757287	11757769	.	-	.	transcript_id "Ledus.S2G154300.t1"; gene_id "Ledus.S2G154300"
Ledus.S2	AUGUSTUS	start_codon	11757767	11757769	.	-	0	transcript_id "Ledus.S2G154300.t1"; gene_id "Ledus.S2G154300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7911.t1 is derived from g12582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7790084	7790941	.	+	.	Ledus.S5G068900
Ledus.S5	AUGUSTUS	transcript	7790084	7790941	.	+	.	transcript_id "Ledus.S5G068900.t1"; gene_id "Ledus.S5G068900"
Ledus.S5	AUGUSTUS	start_codon	7790084	7790086	.	+	0	transcript_id "Ledus.S5G068900.t1"; gene_id "Ledus.S5G068900"
Ledus.S5	AUGUSTUS	CDS	7790084	7790941	0.99	+	0	transcript_id "Ledus.S5G068900.t1"; gene_id "Ledus.S5G068900"
Ledus.S5	AUGUSTUS	exon	7790084	7790941	.	+	.	transcript_id "Ledus.S5G068900.t1"; gene_id "Ledus.S5G068900"
Ledus.S5	AUGUSTUS	stop_codon	7790942	7790944	.	+	0	transcript_id "Ledus.S5G068900.t1"; gene_id "Ledus.S5G068900"
Ledus.S5	AUGUSTUS	transcript	7790138	7790941	.	+	.	transcript_id "Ledus.S5G068900.t2"; gene_id "Ledus.S5G068900"
Ledus.S5	AUGUSTUS	start_codon	7790138	7790140	.	+	0	transcript_id "Ledus.S5G068900.t2"; gene_id "Ledus.S5G068900"
Ledus.S5	AUGUSTUS	CDS	7790138	7790941	0.59	+	0	transcript_id "Ledus.S5G068900.t2"; gene_id "Ledus.S5G068900"
Ledus.S5	AUGUSTUS	exon	7790138	7790941	.	+	.	transcript_id "Ledus.S5G068900.t2"; gene_id "Ledus.S5G068900"
Ledus.S5	AUGUSTUS	stop_codon	7790942	7790944	.	+	0	transcript_id "Ledus.S5G068900.t2"; gene_id "Ledus.S5G068900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6284.t1 is derived from g3727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30117257	30118242	.	+	.	Ledus.S1G370500
Ledus.S1	AUGUSTUS	transcript	30117257	30118242	.	+	.	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	start_codon	30117257	30117259	.	+	0	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	CDS	30117257	30117510	0.95	+	0	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	exon	30117257	30117510	.	+	.	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	intron	30117511	30117593	.	+	.	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	CDS	30117594	30117700	1	+	1	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	exon	30117594	30117700	.	+	.	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	intron	30117701	30117805	.	+	.	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	CDS	30117806	30117990	0.98	+	2	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	exon	30117806	30117990	.	+	.	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	intron	30117991	30118086	.	+	.	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	CDS	30118087	30118242	0.99	+	0	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	exon	30118087	30118242	.	+	.	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
Ledus.S1	AUGUSTUS	stop_codon	30118243	30118245	.	+	0	transcript_id "Ledus.S1G370500.t1"; gene_id "Ledus.S1G370500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3532.t1 is derived from g968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9306004	9310479	.	+	.	Ledus.S1G095300
Ledus.S1	AUGUSTUS	transcript	9306004	9310479	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	start_codon	9306004	9306006	.	+	0	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9306004	9306133	0.74	+	0	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9306004	9306133	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9306134	9306251	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9306252	9306384	0.73	+	2	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9306252	9306384	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9306385	9306498	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9306499	9306573	0.89	+	1	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9306499	9306573	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9306574	9306747	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9306748	9306819	0.74	+	1	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9306748	9306819	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9306820	9306904	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9306905	9306976	1	+	1	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9306905	9306976	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9306977	9307080	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9307081	9307152	0.97	+	1	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9307081	9307152	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9307153	9307233	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9307234	9307305	1	+	1	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9307234	9307305	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9307306	9307415	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9307416	9307505	1	+	1	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9307416	9307505	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9307506	9307650	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9307651	9307722	1	+	1	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9307651	9307722	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9307723	9307804	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9307805	9307876	1	+	1	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9307805	9307876	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9307877	9307986	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9307987	9308046	1	+	1	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9307987	9308046	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9308047	9308145	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9308146	9308375	1	+	1	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9308146	9308375	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9308376	9308465	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9308466	9308702	1	+	2	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9308466	9308702	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9308703	9308833	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9308834	9308902	1	+	2	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9308834	9308902	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9308903	9309012	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9309013	9309072	1	+	2	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9309013	9309072	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9309073	9309163	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9309164	9309226	1	+	2	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9309164	9309226	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9309227	9309353	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9309354	9309676	0.98	+	2	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9309354	9309676	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	intron	9309677	9309786	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	CDS	9309787	9310479	0.97	+	0	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	exon	9309787	9310479	.	+	.	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
Ledus.S1	AUGUSTUS	stop_codon	9310480	9310482	.	+	0	transcript_id "Ledus.S1G095300.t1"; gene_id "Ledus.S1G095300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2707.t1 is derived from g140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2313126	2315840	.	-	.	Ledus.S1G012800
Ledus.S1	AUGUSTUS	transcript	2313126	2315840	.	-	.	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	stop_codon	2313123	2313125	.	-	0	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	CDS	2313126	2313739	1	-	2	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	exon	2313126	2313739	.	-	.	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	intron	2313740	2313839	.	-	.	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	CDS	2313840	2313986	0.98	-	2	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	exon	2313840	2313986	.	-	.	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	intron	2313987	2314099	.	-	.	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	CDS	2314100	2315585	1	-	0	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	exon	2314100	2315585	.	-	.	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	intron	2315586	2315789	.	-	.	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	CDS	2315790	2315840	0.32	-	0	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	exon	2315790	2315840	.	-	.	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
Ledus.S1	AUGUSTUS	start_codon	2315838	2315840	.	-	0	transcript_id "Ledus.S1G012800.t1"; gene_id "Ledus.S1G012800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6702.t1 is derived from g4145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33414721	33417050	.	+	.	Ledus.S1G412300
Ledus.S1	AUGUSTUS	transcript	33414721	33417050	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	start_codon	33414721	33414723	.	+	0	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	CDS	33414721	33414966	1	+	0	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	exon	33414721	33414966	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	intron	33414967	33415109	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	CDS	33415110	33415196	1	+	0	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	exon	33415110	33415196	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	intron	33415197	33415327	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	CDS	33415328	33415409	0.97	+	0	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	exon	33415328	33415409	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	intron	33415410	33415511	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	CDS	33415512	33415638	0.67	+	2	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	exon	33415512	33415638	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	intron	33415639	33415750	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	CDS	33415751	33415867	0.97	+	1	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	exon	33415751	33415867	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	intron	33415868	33415959	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	CDS	33415960	33416136	0.37	+	1	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	exon	33415960	33416136	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	intron	33416137	33416228	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	CDS	33416229	33416289	0.28	+	1	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	exon	33416229	33416289	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	intron	33416290	33416813	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	CDS	33416814	33417050	0.94	+	0	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	exon	33416814	33417050	.	+	.	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
Ledus.S1	AUGUSTUS	stop_codon	33417051	33417053	.	+	0	transcript_id "Ledus.S1G412300.t1"; gene_id "Ledus.S1G412300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5970.t1 is derived from g3413.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28101440	28102477	.	+	.	Ledus.S1G339100
Ledus.S1	AUGUSTUS	transcript	28101440	28102477	.	+	.	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	start_codon	28101440	28101442	.	+	0	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	CDS	28101440	28101600	0.31	+	0	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	exon	28101440	28101600	.	+	.	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	intron	28101601	28101792	.	+	.	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	CDS	28101793	28101864	0.22	+	1	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	exon	28101793	28101864	.	+	.	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	intron	28101865	28101963	.	+	.	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	CDS	28101964	28102007	0.38	+	1	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	exon	28101964	28102007	.	+	.	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	intron	28102008	28102328	.	+	.	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	CDS	28102329	28102477	0.92	+	2	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	exon	28102329	28102477	.	+	.	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
Ledus.S1	AUGUSTUS	stop_codon	28102478	28102480	.	+	0	transcript_id "Ledus.S1G339100.t1"; gene_id "Ledus.S1G339100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2477.t1 is derived from g9340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18370793	18374245	.	-	.	Ledus.S2G235900
Ledus.S2	AUGUSTUS	transcript	18370793	18374245	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	stop_codon	18370790	18370792	.	-	0	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18370793	18370850	1	-	1	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18370793	18370850	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18370851	18371530	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18371531	18371679	1	-	0	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18371531	18371679	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18371680	18371768	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18371769	18372047	1	-	0	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18371769	18372047	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18372048	18372139	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18372140	18372290	1	-	1	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18372140	18372290	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18372291	18372431	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18372432	18372548	1	-	1	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18372432	18372548	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18372549	18372637	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18372638	18372732	0.55	-	0	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18372638	18372732	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18372733	18372889	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18372890	18372945	0.97	-	2	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18372890	18372945	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18372946	18373043	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18373044	18373156	1	-	1	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18373044	18373156	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18373157	18373295	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18373296	18373366	1	-	0	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18373296	18373366	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18373367	18373454	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18373455	18373537	1	-	2	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18373455	18373537	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18373538	18373621	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18373622	18373752	1	-	1	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18373622	18373752	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18373753	18373851	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18373852	18373931	1	-	0	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18373852	18373931	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18373932	18374014	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18374015	18374139	1	-	2	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18374015	18374139	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	intron	18374140	18374238	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	CDS	18374239	18374245	0.98	-	0	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	exon	18374239	18374245	.	-	.	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
Ledus.S2	AUGUSTUS	start_codon	18374243	18374245	.	-	0	transcript_id "Ledus.S2G235900.t1"; gene_id "Ledus.S2G235900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9273.t1 is derived from g10303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5738121	5740197	.	-	.	Ledus.S3G075000
Ledus.S3	AUGUSTUS	transcript	5738121	5740197	.	-	.	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	stop_codon	5738118	5738120	.	-	0	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	CDS	5738121	5738191	0.47	-	2	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	exon	5738121	5738191	.	-	.	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	intron	5738192	5738335	.	-	.	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	CDS	5738336	5738407	0.35	-	2	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	exon	5738336	5738407	.	-	.	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	intron	5738408	5738633	.	-	.	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	CDS	5738634	5738717	0.5	-	2	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	exon	5738634	5738717	.	-	.	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	intron	5738718	5739884	.	-	.	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	CDS	5739885	5740197	0.46	-	0	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	exon	5739885	5740197	.	-	.	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
Ledus.S3	AUGUSTUS	start_codon	5740195	5740197	.	-	0	transcript_id "Ledus.S3G075000.t1"; gene_id "Ledus.S3G075000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4640.t1 is derived from g2077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18570505	18572631	.	-	.	Ledus.S1G206100
Ledus.S1	AUGUSTUS	transcript	18570505	18572631	.	-	.	transcript_id "Ledus.S1G206100.t1"; gene_id "Ledus.S1G206100"
Ledus.S1	AUGUSTUS	stop_codon	18570502	18570504	.	-	0	transcript_id "Ledus.S1G206100.t1"; gene_id "Ledus.S1G206100"
Ledus.S1	AUGUSTUS	CDS	18570505	18570637	1	-	1	transcript_id "Ledus.S1G206100.t1"; gene_id "Ledus.S1G206100"
Ledus.S1	AUGUSTUS	exon	18570505	18570637	.	-	.	transcript_id "Ledus.S1G206100.t1"; gene_id "Ledus.S1G206100"
Ledus.S1	AUGUSTUS	intron	18570638	18570723	.	-	.	transcript_id "Ledus.S1G206100.t1"; gene_id "Ledus.S1G206100"
Ledus.S1	AUGUSTUS	CDS	18570724	18571347	1	-	1	transcript_id "Ledus.S1G206100.t1"; gene_id "Ledus.S1G206100"
Ledus.S1	AUGUSTUS	exon	18570724	18571347	.	-	.	transcript_id "Ledus.S1G206100.t1"; gene_id "Ledus.S1G206100"
Ledus.S1	AUGUSTUS	intron	18571348	18571429	.	-	.	transcript_id "Ledus.S1G206100.t1"; gene_id "Ledus.S1G206100"
Ledus.S1	AUGUSTUS	CDS	18571430	18572631	0.97	-	0	transcript_id "Ledus.S1G206100.t1"; gene_id "Ledus.S1G206100"
Ledus.S1	AUGUSTUS	exon	18571430	18572631	.	-	.	transcript_id "Ledus.S1G206100.t1"; gene_id "Ledus.S1G206100"
Ledus.S1	AUGUSTUS	start_codon	18572629	18572631	.	-	0	transcript_id "Ledus.S1G206100.t1"; gene_id "Ledus.S1G206100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2345.t1 is derived from g9208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17375242	17375889	.	+	.	Ledus.S2G222700
Ledus.S2	AUGUSTUS	transcript	17375242	17375889	.	+	.	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	start_codon	17375242	17375244	.	+	0	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	CDS	17375242	17375290	0.13	+	0	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	exon	17375242	17375290	.	+	.	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	intron	17375291	17375463	.	+	.	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	CDS	17375464	17375471	0.21	+	2	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	exon	17375464	17375471	.	+	.	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	intron	17375472	17375547	.	+	.	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	CDS	17375548	17375609	0.21	+	0	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	exon	17375548	17375609	.	+	.	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	intron	17375610	17375807	.	+	.	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	CDS	17375808	17375889	0.19	+	1	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	exon	17375808	17375889	.	+	.	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
Ledus.S2	AUGUSTUS	stop_codon	17375890	17375892	.	+	0	transcript_id "Ledus.S2G222700.t1"; gene_id "Ledus.S2G222700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1479.t1 is derived from g8340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10476703	10476939	.	-	.	Ledus.S2G136100
Ledus.S2	AUGUSTUS	transcript	10476703	10476939	.	-	.	transcript_id "Ledus.S2G136100.t1"; gene_id "Ledus.S2G136100"
Ledus.S2	AUGUSTUS	stop_codon	10476700	10476702	.	-	0	transcript_id "Ledus.S2G136100.t1"; gene_id "Ledus.S2G136100"
Ledus.S2	AUGUSTUS	CDS	10476703	10476939	0.99	-	0	transcript_id "Ledus.S2G136100.t1"; gene_id "Ledus.S2G136100"
Ledus.S2	AUGUSTUS	exon	10476703	10476939	.	-	.	transcript_id "Ledus.S2G136100.t1"; gene_id "Ledus.S2G136100"
Ledus.S2	AUGUSTUS	start_codon	10476937	10476939	.	-	0	transcript_id "Ledus.S2G136100.t1"; gene_id "Ledus.S2G136100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1363.t1 is derived from g8224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9467405	9469509	.	+	.	Ledus.S2G124500
Ledus.S2	AUGUSTUS	transcript	9467405	9469509	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	start_codon	9467405	9467407	.	+	0	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	CDS	9467405	9467459	1	+	0	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	exon	9467405	9467459	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	intron	9467460	9467590	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	CDS	9467591	9467848	0.94	+	2	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	exon	9467591	9467848	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	intron	9467849	9467935	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	CDS	9467936	9468012	1	+	2	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	exon	9467936	9468012	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	intron	9468013	9468137	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	CDS	9468138	9468218	1	+	0	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	exon	9468138	9468218	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	intron	9468219	9468346	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	CDS	9468347	9468439	1	+	0	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	exon	9468347	9468439	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	intron	9468440	9468629	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	CDS	9468630	9468752	1	+	0	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	exon	9468630	9468752	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	intron	9468753	9468964	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	CDS	9468965	9469036	1	+	0	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	exon	9468965	9469036	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	intron	9469037	9469143	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	CDS	9469144	9469221	0.99	+	0	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	exon	9469144	9469221	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	intron	9469222	9469320	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	CDS	9469321	9469509	0.8	+	0	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	exon	9469321	9469509	.	+	.	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
Ledus.S2	AUGUSTUS	stop_codon	9469510	9469512	.	+	0	transcript_id "Ledus.S2G124500.t1"; gene_id "Ledus.S2G124500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1656.t1 is derived from g8517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11729871	11732026	.	+	.	Ledus.S2G153800
Ledus.S2	AUGUSTUS	transcript	11729871	11732026	.	+	.	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	start_codon	11729871	11729873	.	+	0	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	CDS	11729871	11730851	0.29	+	0	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	exon	11729871	11730851	.	+	.	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	intron	11730852	11731038	.	+	.	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	CDS	11731039	11731230	1	+	0	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	exon	11731039	11731230	.	+	.	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	intron	11731231	11731367	.	+	.	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	CDS	11731368	11731455	1	+	0	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	exon	11731368	11731455	.	+	.	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	intron	11731456	11731540	.	+	.	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	CDS	11731541	11731611	1	+	2	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	exon	11731541	11731611	.	+	.	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	intron	11731612	11731733	.	+	.	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	CDS	11731734	11731817	1	+	0	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	exon	11731734	11731817	.	+	.	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	intron	11731818	11731924	.	+	.	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	CDS	11731925	11732026	1	+	0	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	exon	11731925	11732026	.	+	.	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
Ledus.S2	AUGUSTUS	stop_codon	11732027	11732029	.	+	0	transcript_id "Ledus.S2G153800.t1"; gene_id "Ledus.S2G153800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10746.t1 is derived from g11777.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17457107	17458507	.	+	.	Ledus.S3G222300
Ledus.S3	AUGUSTUS	transcript	17457107	17458507	.	+	.	transcript_id "Ledus.S3G222300.t1"; gene_id "Ledus.S3G222300"
Ledus.S3	AUGUSTUS	start_codon	17457107	17457109	.	+	0	transcript_id "Ledus.S3G222300.t1"; gene_id "Ledus.S3G222300"
Ledus.S3	AUGUSTUS	CDS	17457107	17458507	0.99	+	0	transcript_id "Ledus.S3G222300.t1"; gene_id "Ledus.S3G222300"
Ledus.S3	AUGUSTUS	exon	17457107	17458507	.	+	.	transcript_id "Ledus.S3G222300.t1"; gene_id "Ledus.S3G222300"
Ledus.S3	AUGUSTUS	stop_codon	17458508	17458510	.	+	0	transcript_id "Ledus.S3G222300.t1"; gene_id "Ledus.S3G222300"
Ledus.S3	AUGUSTUS	transcript	17457866	17458507	.	+	.	transcript_id "Ledus.S3G222300.t2"; gene_id "Ledus.S3G222300"
Ledus.S3	AUGUSTUS	start_codon	17457866	17457868	.	+	0	transcript_id "Ledus.S3G222300.t2"; gene_id "Ledus.S3G222300"
Ledus.S3	AUGUSTUS	CDS	17457866	17458507	0.96	+	0	transcript_id "Ledus.S3G222300.t2"; gene_id "Ledus.S3G222300"
Ledus.S3	AUGUSTUS	exon	17457866	17458507	.	+	.	transcript_id "Ledus.S3G222300.t2"; gene_id "Ledus.S3G222300"
Ledus.S3	AUGUSTUS	stop_codon	17458508	17458510	.	+	0	transcript_id "Ledus.S3G222300.t2"; gene_id "Ledus.S3G222300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6166.t1 is derived from g3609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29343544	29348952	.	-	.	Ledus.S1G358700
Ledus.S1	AUGUSTUS	transcript	29343544	29348952	.	-	.	transcript_id "Ledus.S1G358700.t1"; gene_id "Ledus.S1G358700"
Ledus.S1	AUGUSTUS	stop_codon	29343541	29343543	.	-	0	transcript_id "Ledus.S1G358700.t1"; gene_id "Ledus.S1G358700"
Ledus.S1	AUGUSTUS	CDS	29343544	29348952	0.68	-	0	transcript_id "Ledus.S1G358700.t1"; gene_id "Ledus.S1G358700"
Ledus.S1	AUGUSTUS	exon	29343544	29348952	.	-	.	transcript_id "Ledus.S1G358700.t1"; gene_id "Ledus.S1G358700"
Ledus.S1	AUGUSTUS	start_codon	29348950	29348952	.	-	0	transcript_id "Ledus.S1G358700.t1"; gene_id "Ledus.S1G358700"
Ledus.S1	AUGUSTUS	transcript	29343544	29344926	.	-	.	transcript_id "Ledus.S1G358700.t2"; gene_id "Ledus.S1G358700"
Ledus.S1	AUGUSTUS	stop_codon	29343541	29343543	.	-	0	transcript_id "Ledus.S1G358700.t2"; gene_id "Ledus.S1G358700"
Ledus.S1	AUGUSTUS	CDS	29343544	29344926	0.49	-	0	transcript_id "Ledus.S1G358700.t2"; gene_id "Ledus.S1G358700"
Ledus.S1	AUGUSTUS	exon	29343544	29344926	.	-	.	transcript_id "Ledus.S1G358700.t2"; gene_id "Ledus.S1G358700"
Ledus.S1	AUGUSTUS	start_codon	29344924	29344926	.	-	0	transcript_id "Ledus.S1G358700.t2"; gene_id "Ledus.S1G358700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11061.t1 is derived from g4679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1530195	1531676	.	-	.	Ledus.S4G021700
Ledus.S4	AUGUSTUS	transcript	1530195	1531676	.	-	.	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	stop_codon	1530192	1530194	.	-	0	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	CDS	1530195	1530277	0.83	-	2	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	exon	1530195	1530277	.	-	.	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	intron	1530278	1530364	.	-	.	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	CDS	1530365	1530430	0.83	-	2	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	exon	1530365	1530430	.	-	.	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	intron	1530431	1530588	.	-	.	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	CDS	1530589	1531306	0.93	-	0	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	exon	1530589	1531306	.	-	.	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	intron	1531307	1531400	.	-	.	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	CDS	1531401	1531676	0.99	-	0	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	exon	1531401	1531676	.	-	.	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
Ledus.S4	AUGUSTUS	start_codon	1531674	1531676	.	-	0	transcript_id "Ledus.S4G021700.t1"; gene_id "Ledus.S4G021700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8804.t1 is derived from g9834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2048466	2050943	.	-	.	Ledus.S3G028100
Ledus.S3	AUGUSTUS	transcript	2048466	2050943	.	-	.	transcript_id "Ledus.S3G028100.t1"; gene_id "Ledus.S3G028100"
Ledus.S3	AUGUSTUS	stop_codon	2048463	2048465	.	-	0	transcript_id "Ledus.S3G028100.t1"; gene_id "Ledus.S3G028100"
Ledus.S3	AUGUSTUS	CDS	2048466	2050732	0.89	-	2	transcript_id "Ledus.S3G028100.t1"; gene_id "Ledus.S3G028100"
Ledus.S3	AUGUSTUS	exon	2048466	2050732	.	-	.	transcript_id "Ledus.S3G028100.t1"; gene_id "Ledus.S3G028100"
Ledus.S3	AUGUSTUS	intron	2050733	2050828	.	-	.	transcript_id "Ledus.S3G028100.t1"; gene_id "Ledus.S3G028100"
Ledus.S3	AUGUSTUS	CDS	2050829	2050943	1	-	0	transcript_id "Ledus.S3G028100.t1"; gene_id "Ledus.S3G028100"
Ledus.S3	AUGUSTUS	exon	2050829	2050943	.	-	.	transcript_id "Ledus.S3G028100.t1"; gene_id "Ledus.S3G028100"
Ledus.S3	AUGUSTUS	start_codon	2050941	2050943	.	-	0	transcript_id "Ledus.S3G028100.t1"; gene_id "Ledus.S3G028100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg859.t1 is derived from g7720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5709371	5715616	.	-	.	Ledus.S2G074100
Ledus.S2	AUGUSTUS	transcript	5709371	5715616	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	stop_codon	5709368	5709370	.	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5709371	5709619	1	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5709371	5709619	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5709620	5709698	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5709699	5709875	1	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5709699	5709875	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5709876	5709984	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5709985	5710113	1	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5709985	5710113	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5710114	5710212	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5710213	5710310	0.65	-	2	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5710213	5710310	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5710311	5710422	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5710423	5710750	0.69	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5710423	5710750	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5710751	5710874	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5710875	5711072	0.94	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5710875	5711072	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5711073	5711169	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5711170	5711270	1	-	2	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5711170	5711270	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5711271	5711359	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5711360	5712395	0.95	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5711360	5712395	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5712396	5712507	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5712508	5712882	0.97	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5712508	5712882	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5712883	5713244	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5713245	5713406	1	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5713245	5713406	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5713407	5713584	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5713585	5713809	1	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5713585	5713809	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5713810	5713933	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5713934	5714485	0.68	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5713934	5714485	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5714486	5714615	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5714616	5714693	1	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5714616	5714693	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5714694	5714791	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5714792	5714863	1	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5714792	5714863	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5714864	5715022	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5715023	5715370	0.96	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5715023	5715370	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	intron	5715371	5715565	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	CDS	5715566	5715616	0.24	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	exon	5715566	5715616	.	-	.	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
Ledus.S2	AUGUSTUS	start_codon	5715614	5715616	.	-	0	transcript_id "Ledus.S2G074100.t1"; gene_id "Ledus.S2G074100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2065.t1 is derived from g8928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14422154	14424787	.	+	.	Ledus.S2G194700
Ledus.S2	AUGUSTUS	transcript	14422154	14424787	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	start_codon	14422154	14422156	.	+	0	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	CDS	14422154	14422300	1	+	0	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	exon	14422154	14422300	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	intron	14422301	14422429	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	CDS	14422430	14422556	0.95	+	0	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	exon	14422430	14422556	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	intron	14422557	14422696	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	CDS	14422697	14422866	0.69	+	2	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	exon	14422697	14422866	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	intron	14422867	14422975	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	CDS	14422976	14423156	0.99	+	0	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	exon	14422976	14423156	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	intron	14423157	14423260	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	CDS	14423261	14423540	1	+	2	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	exon	14423261	14423540	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	intron	14423541	14423709	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	CDS	14423710	14423782	1	+	1	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	exon	14423710	14423782	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	intron	14423783	14423915	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	CDS	14423916	14424036	1	+	0	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	exon	14423916	14424036	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	intron	14424037	14424325	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	CDS	14424326	14424405	0.99	+	2	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	exon	14424326	14424405	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	intron	14424406	14424508	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	CDS	14424509	14424787	1	+	0	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	exon	14424509	14424787	.	+	.	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
Ledus.S2	AUGUSTUS	stop_codon	14424788	14424790	.	+	0	transcript_id "Ledus.S2G194700.t1"; gene_id "Ledus.S2G194700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1932.t1 is derived from g8795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13573583	13574977	.	-	.	Ledus.S2G181400
Ledus.S2	AUGUSTUS	transcript	13573583	13574977	.	-	.	transcript_id "Ledus.S2G181400.t1"; gene_id "Ledus.S2G181400"
Ledus.S2	AUGUSTUS	stop_codon	13573580	13573582	.	-	0	transcript_id "Ledus.S2G181400.t1"; gene_id "Ledus.S2G181400"
Ledus.S2	AUGUSTUS	CDS	13573583	13573846	0.82	-	0	transcript_id "Ledus.S2G181400.t1"; gene_id "Ledus.S2G181400"
Ledus.S2	AUGUSTUS	exon	13573583	13573846	.	-	.	transcript_id "Ledus.S2G181400.t1"; gene_id "Ledus.S2G181400"
Ledus.S2	AUGUSTUS	intron	13573847	13574002	.	-	.	transcript_id "Ledus.S2G181400.t1"; gene_id "Ledus.S2G181400"
Ledus.S2	AUGUSTUS	CDS	13574003	13574977	0.82	-	0	transcript_id "Ledus.S2G181400.t1"; gene_id "Ledus.S2G181400"
Ledus.S2	AUGUSTUS	exon	13574003	13574977	.	-	.	transcript_id "Ledus.S2G181400.t1"; gene_id "Ledus.S2G181400"
Ledus.S2	AUGUSTUS	start_codon	13574975	13574977	.	-	0	transcript_id "Ledus.S2G181400.t1"; gene_id "Ledus.S2G181400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12667.t1 is derived from g6289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13795462	13796352	.	+	.	Ledus.S4G182300
Ledus.S4	AUGUSTUS	transcript	13795462	13796352	.	+	.	transcript_id "Ledus.S4G182300.t1"; gene_id "Ledus.S4G182300"
Ledus.S4	AUGUSTUS	start_codon	13795462	13795464	.	+	0	transcript_id "Ledus.S4G182300.t1"; gene_id "Ledus.S4G182300"
Ledus.S4	AUGUSTUS	CDS	13795462	13796352	0.7	+	0	transcript_id "Ledus.S4G182300.t1"; gene_id "Ledus.S4G182300"
Ledus.S4	AUGUSTUS	exon	13795462	13796352	.	+	.	transcript_id "Ledus.S4G182300.t1"; gene_id "Ledus.S4G182300"
Ledus.S4	AUGUSTUS	stop_codon	13796353	13796355	.	+	0	transcript_id "Ledus.S4G182300.t1"; gene_id "Ledus.S4G182300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10276.t1 is derived from g11306.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13971064	13974867	.	+	.	Ledus.S3G175300
Ledus.S3	AUGUSTUS	transcript	13971064	13974867	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	start_codon	13971064	13971066	.	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13971064	13971102	0.83	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13971064	13971102	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13971103	13971381	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13971382	13971773	1	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13971382	13971773	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13971774	13971952	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13971953	13972094	1	+	1	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13971953	13972094	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13972095	13972287	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13972288	13972386	0.71	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13972288	13972386	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13972387	13972494	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13972495	13972551	1	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13972495	13972551	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13972552	13972681	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13972682	13972753	1	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13972682	13972753	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13972754	13972907	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13972908	13972997	1	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13972908	13972997	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13972998	13973094	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13973095	13973154	1	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13973095	13973154	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13973155	13973358	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13973359	13973547	1	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13973359	13973547	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13973548	13973695	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13973696	13973788	1	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13973696	13973788	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13973789	13973874	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13973875	13973956	1	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13973875	13973956	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13973957	13974101	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13974102	13974208	1	+	2	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13974102	13974208	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13974209	13974286	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13974287	13974362	1	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13974287	13974362	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13974363	13974511	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13974512	13974558	1	+	2	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13974512	13974558	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13974559	13974661	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13974662	13974724	1	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13974662	13974724	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	intron	13974725	13974807	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	CDS	13974808	13974867	1	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	exon	13974808	13974867	.	+	.	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
Ledus.S3	AUGUSTUS	stop_codon	13974868	13974870	.	+	0	transcript_id "Ledus.S3G175300.t1"; gene_id "Ledus.S3G175300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7971.t1 is derived from g12642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8286299	8290598	.	-	.	Ledus.S5G074900
Ledus.S5	AUGUSTUS	transcript	8286299	8290598	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	stop_codon	8286296	8286298	.	-	0	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8286299	8286372	0.53	-	2	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8286299	8286372	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8286373	8286712	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8286713	8286815	0.9	-	0	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8286713	8286815	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8286816	8286892	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8286893	8287046	1	-	1	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8286893	8287046	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8287047	8287131	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8287132	8287262	0.98	-	0	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8287132	8287262	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8287263	8287366	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8287367	8287507	0.99	-	0	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8287367	8287507	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8287508	8287588	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8287589	8287789	1	-	0	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8287589	8287789	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8287790	8287885	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8287886	8288090	1	-	1	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8287886	8288090	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8288091	8288317	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8288318	8288704	0.42	-	1	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8288318	8288704	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8288705	8288821	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8288822	8289000	0.99	-	0	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8288822	8289000	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8289001	8289179	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8289180	8289305	1	-	0	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8289180	8289305	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8289306	8289454	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8289455	8289749	0.99	-	1	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8289455	8289749	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8289750	8289901	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8289902	8290088	1	-	2	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8289902	8290088	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8290089	8290351	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8290352	8290439	1	-	0	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8290352	8290439	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	intron	8290440	8290589	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	CDS	8290590	8290598	0.69	-	0	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	exon	8290590	8290598	.	-	.	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
Ledus.S5	AUGUSTUS	start_codon	8290596	8290598	.	-	0	transcript_id "Ledus.S5G074900.t1"; gene_id "Ledus.S5G074900"
# This transcript jg11267.t2 is derived from g4885.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11268.t1 is derived from g4886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3088810	3091848	.	-	.	Ledus.S4G042400
Ledus.S4	AUGUSTUS	transcript	3088810	3091848	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	stop_codon	3088807	3088809	.	-	0	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3088810	3088844	1	-	2	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3088810	3088844	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3088845	3088931	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3088932	3089199	1	-	0	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3088932	3089199	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3089200	3089340	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3089341	3089412	1	-	0	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3089341	3089412	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3089413	3089521	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3089522	3089852	1	-	1	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3089522	3089852	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3089853	3089959	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3089960	3090266	0.79	-	2	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3089960	3090266	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3090267	3090405	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3090406	3090436	0.6	-	0	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3090406	3090436	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3090437	3090574	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3090575	3090742	0.84	-	0	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3090575	3090742	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3090743	3090826	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3090827	3090892	1	-	0	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3090827	3090892	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3090893	3090983	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3090984	3091080	0.98	-	1	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3090984	3091080	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3091081	3091181	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3091182	3091422	0.99	-	2	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3091182	3091422	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3091423	3091514	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3091515	3091601	1	-	2	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3091515	3091601	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3091602	3091700	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3091701	3091848	0.98	-	0	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3091701	3091848	.	-	.	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	start_codon	3091846	3091848	.	-	0	transcript_id "Ledus.S4G042400.t1"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	transcript	3088810	3091848	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	stop_codon	3088807	3088809	.	-	0	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3088810	3088844	1	-	2	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3088810	3088844	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3088845	3088931	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3088932	3089199	1	-	0	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3088932	3089199	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3089200	3089340	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3089341	3089412	1	-	0	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3089341	3089412	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3089413	3089521	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3089522	3089852	1	-	1	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3089522	3089852	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3089853	3089959	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3089960	3090266	0.84	-	2	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3089960	3090266	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3090267	3090405	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3090406	3090436	0.66	-	0	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3090406	3090436	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3090437	3090574	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3090575	3090742	0.85	-	0	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3090575	3090742	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3090743	3090826	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3090827	3090892	1	-	0	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3090827	3090892	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3090893	3090983	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3090984	3091088	1	-	0	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3090984	3091088	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3091089	3091181	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3091182	3091213	0.86	-	2	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3091182	3091213	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3091214	3091314	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3091315	3091422	0.52	-	2	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3091315	3091422	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3091423	3091514	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3091515	3091601	1	-	2	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3091515	3091601	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3091602	3091700	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3091701	3091848	1	-	0	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3091701	3091848	.	-	.	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	start_codon	3091846	3091848	.	-	0	transcript_id "Ledus.S4G042400.t2"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	transcript	3088810	3091848	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	stop_codon	3088807	3088809	.	-	0	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3088810	3088844	1	-	2	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3088810	3088844	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3088845	3088931	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3088932	3089199	1	-	0	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3088932	3089199	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3089200	3089340	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3089341	3089412	1	-	0	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3089341	3089412	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3089413	3089521	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3089522	3089852	1	-	1	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3089522	3089852	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3089853	3089959	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3089960	3090266	0.8	-	2	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3089960	3090266	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3090267	3090405	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3090406	3090436	0.61	-	0	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3090406	3090436	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3090437	3090574	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3090575	3090742	0.76	-	0	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3090575	3090742	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3090743	3090826	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3090827	3090892	1	-	0	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3090827	3090892	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3090893	3090983	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3090984	3091088	1	-	0	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3090984	3091088	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3091089	3091181	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3091182	3091213	0.95	-	2	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3091182	3091213	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3091214	3091314	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3091315	3091422	0.55	-	2	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3091315	3091422	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3091423	3091514	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3091515	3091610	1	-	2	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3091515	3091610	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	intron	3091611	3091700	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	CDS	3091701	3091848	0.96	-	0	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	exon	3091701	3091848	.	-	.	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
Ledus.S4	AUGUSTUS	start_codon	3091846	3091848	.	-	0	transcript_id "Ledus.S4G042400.t3"; gene_id "Ledus.S4G042400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10333.t1 is derived from g11363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14291140	14292084	.	+	.	Ledus.S3G181000
Ledus.S3	AUGUSTUS	transcript	14291140	14292084	.	+	.	transcript_id "Ledus.S3G181000.t1"; gene_id "Ledus.S3G181000"
Ledus.S3	AUGUSTUS	start_codon	14291140	14291142	.	+	0	transcript_id "Ledus.S3G181000.t1"; gene_id "Ledus.S3G181000"
Ledus.S3	AUGUSTUS	CDS	14291140	14291563	0.27	+	0	transcript_id "Ledus.S3G181000.t1"; gene_id "Ledus.S3G181000"
Ledus.S3	AUGUSTUS	exon	14291140	14291563	.	+	.	transcript_id "Ledus.S3G181000.t1"; gene_id "Ledus.S3G181000"
Ledus.S3	AUGUSTUS	intron	14291564	14291652	.	+	.	transcript_id "Ledus.S3G181000.t1"; gene_id "Ledus.S3G181000"
Ledus.S3	AUGUSTUS	CDS	14291653	14291829	0.2	+	2	transcript_id "Ledus.S3G181000.t1"; gene_id "Ledus.S3G181000"
Ledus.S3	AUGUSTUS	exon	14291653	14291829	.	+	.	transcript_id "Ledus.S3G181000.t1"; gene_id "Ledus.S3G181000"
Ledus.S3	AUGUSTUS	intron	14291830	14291896	.	+	.	transcript_id "Ledus.S3G181000.t1"; gene_id "Ledus.S3G181000"
Ledus.S3	AUGUSTUS	CDS	14291897	14292084	0.38	+	2	transcript_id "Ledus.S3G181000.t1"; gene_id "Ledus.S3G181000"
Ledus.S3	AUGUSTUS	exon	14291897	14292084	.	+	.	transcript_id "Ledus.S3G181000.t1"; gene_id "Ledus.S3G181000"
Ledus.S3	AUGUSTUS	stop_codon	14292085	14292087	.	+	0	transcript_id "Ledus.S3G181000.t1"; gene_id "Ledus.S3G181000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4923.t1 is derived from g2361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20656283	20656780	.	+	.	Ledus.S1G234400
Ledus.S1	AUGUSTUS	transcript	20656283	20656780	.	+	.	transcript_id "Ledus.S1G234400.t1"; gene_id "Ledus.S1G234400"
Ledus.S1	AUGUSTUS	start_codon	20656283	20656285	.	+	0	transcript_id "Ledus.S1G234400.t1"; gene_id "Ledus.S1G234400"
Ledus.S1	AUGUSTUS	CDS	20656283	20656780	0.67	+	0	transcript_id "Ledus.S1G234400.t1"; gene_id "Ledus.S1G234400"
Ledus.S1	AUGUSTUS	exon	20656283	20656780	.	+	.	transcript_id "Ledus.S1G234400.t1"; gene_id "Ledus.S1G234400"
Ledus.S1	AUGUSTUS	stop_codon	20656781	20656783	.	+	0	transcript_id "Ledus.S1G234400.t1"; gene_id "Ledus.S1G234400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5780.t1 is derived from g3222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26711193	26728950	.	-	.	Ledus.S1G320100
Ledus.S1	AUGUSTUS	transcript	26711193	26728950	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	stop_codon	26711190	26711192	.	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26711193	26711425	1	-	2	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26711193	26711425	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26711426	26711513	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26711514	26711718	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26711514	26711718	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26711719	26711786	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26711787	26712071	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26711787	26712071	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26712072	26712163	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26712164	26712621	0.56	-	2	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26712164	26712621	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26712622	26712712	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26712713	26712956	0.8	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26712713	26712956	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26712957	26713071	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26713072	26713107	0.56	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26713072	26713107	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26713108	26713210	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26713211	26714677	0.99	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26713211	26714677	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26714678	26714770	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26714771	26715118	0.78	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26714771	26715118	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26715119	26715240	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26715241	26715393	0.62	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26715241	26715393	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26715394	26715570	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26715571	26715786	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26715571	26715786	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26715787	26715884	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26715885	26716103	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26715885	26716103	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26716104	26716188	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26716189	26716449	0.99	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26716189	26716449	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26716450	26716562	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26716563	26716661	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26716563	26716661	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26716662	26716775	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26716776	26717018	0.98	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26716776	26717018	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26717019	26717118	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26717119	26717522	1	-	2	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26717119	26717522	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26717523	26717650	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26717651	26717957	0.98	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26717651	26717957	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26717958	26718060	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26718061	26718321	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26718061	26718321	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26718322	26718405	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26718406	26718657	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26718406	26718657	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26718658	26718815	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26718816	26719070	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26718816	26719070	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26719071	26719193	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26719194	26721098	0.52	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26719194	26721098	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26721099	26721290	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26721291	26721615	0.7	-	1	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26721291	26721615	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26721616	26721706	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26721707	26722017	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26721707	26722017	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26722018	26722238	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26722239	26722261	1	-	2	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26722239	26722261	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26722262	26722511	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26722512	26722732	0.99	-	1	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26722512	26722732	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26722733	26722859	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26722860	26723078	0.99	-	1	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26722860	26723078	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26723079	26723167	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26723168	26723298	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26723168	26723298	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26723299	26723392	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26723393	26723533	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26723393	26723533	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26723534	26723700	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26723701	26723875	1	-	1	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26723701	26723875	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26723876	26723961	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26723962	26724125	0.99	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26723962	26724125	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26724126	26724391	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26724392	26724501	0.72	-	2	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26724392	26724501	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26724502	26724792	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26724793	26725081	0.98	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26724793	26725081	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26725082	26725197	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26725198	26725290	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26725198	26725290	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26725291	26725457	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26725458	26725571	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26725458	26725571	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26725572	26725659	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26725660	26725761	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26725660	26725761	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26725762	26725899	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26725900	26725989	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26725900	26725989	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26725990	26726105	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26726106	26726303	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26726106	26726303	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26726304	26726433	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26726434	26727111	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26726434	26727111	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26727112	26727205	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26727206	26727328	1	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26727206	26727328	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26727329	26727526	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26727527	26727855	0.84	-	2	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26727527	26727855	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26727856	26727937	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26727938	26728114	1	-	2	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26727938	26728114	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26728115	26728188	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26728189	26728679	0.99	-	1	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26728189	26728679	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	intron	26728680	26728771	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	CDS	26728772	26728950	0.62	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	exon	26728772	26728950	.	-	.	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
Ledus.S1	AUGUSTUS	start_codon	26728948	26728950	.	-	0	transcript_id "Ledus.S1G320100.t1"; gene_id "Ledus.S1G320100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4879.t1 is derived from g2317.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20501537	20504266	.	+	.	Ledus.S1G230000
Ledus.S1	AUGUSTUS	transcript	20501537	20504266	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	start_codon	20501537	20501539	.	+	0	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20501537	20501739	0.8	+	0	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20501537	20501739	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20501740	20501916	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20501917	20501981	1	+	1	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20501917	20501981	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20501982	20502151	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20502152	20502285	1	+	2	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20502152	20502285	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20502286	20502391	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20502392	20502459	1	+	0	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20502392	20502459	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20502460	20502656	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20502657	20502870	1	+	1	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20502657	20502870	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20502871	20502989	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20502990	20503082	1	+	0	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20502990	20503082	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20503083	20503174	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20503175	20503303	1	+	0	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20503175	20503303	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20503304	20503473	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20503474	20503568	1	+	0	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20503474	20503568	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20503569	20503684	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20503685	20504151	0.9	+	1	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20503685	20504151	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20504152	20504228	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20504229	20504266	0.94	+	2	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20504229	20504266	.	+	.	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	stop_codon	20504267	20504269	.	+	0	transcript_id "Ledus.S1G230000.t1"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	transcript	20501537	20503214	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	start_codon	20501537	20501539	.	+	0	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20501537	20501739	0.81	+	0	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20501537	20501739	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20501740	20501916	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20501917	20501981	1	+	1	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20501917	20501981	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20501982	20502151	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20502152	20502285	1	+	2	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20502152	20502285	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20502286	20502391	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20502392	20502459	1	+	0	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20502392	20502459	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20502460	20502656	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20502657	20502870	1	+	1	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20502657	20502870	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20502871	20502989	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20502990	20503082	1	+	0	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20502990	20503082	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	intron	20503083	20503178	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	CDS	20503179	20503214	0.75	+	0	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	exon	20503179	20503214	.	+	.	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
Ledus.S1	AUGUSTUS	stop_codon	20503215	20503217	.	+	0	transcript_id "Ledus.S1G230000.t2"; gene_id "Ledus.S1G230000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6466.t1 is derived from g3909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31395693	31399313	.	-	.	Ledus.S1G388700
Ledus.S1	AUGUSTUS	transcript	31395693	31399313	.	-	.	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	stop_codon	31395690	31395692	.	-	0	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	CDS	31395693	31395884	0.57	-	0	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	exon	31395693	31395884	.	-	.	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	intron	31395885	31396564	.	-	.	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	CDS	31396565	31396715	0.44	-	1	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	exon	31396565	31396715	.	-	.	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	intron	31396716	31396796	.	-	.	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	CDS	31396797	31397942	0.66	-	1	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	exon	31396797	31397942	.	-	.	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	intron	31397943	31398191	.	-	.	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	CDS	31398192	31398315	0.96	-	2	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	exon	31398192	31398315	.	-	.	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	intron	31398316	31398423	.	-	.	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	CDS	31398424	31398537	0.32	-	2	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	exon	31398424	31398537	.	-	.	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	intron	31398538	31399111	.	-	.	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	CDS	31399112	31399313	0.21	-	0	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	exon	31399112	31399313	.	-	.	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
Ledus.S1	AUGUSTUS	start_codon	31399311	31399313	.	-	0	transcript_id "Ledus.S1G388700.t1"; gene_id "Ledus.S1G388700"
# This transcript jg9057.t2 is derived from g10087.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9058.t1 is derived from g10088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4292608	4292883	.	+	.	Ledus.S3G053500
Ledus.S3	AUGUSTUS	transcript	4292608	4292883	.	+	.	transcript_id "Ledus.S3G053500.t1"; gene_id "Ledus.S3G053500"
Ledus.S3	AUGUSTUS	start_codon	4292608	4292610	.	+	0	transcript_id "Ledus.S3G053500.t1"; gene_id "Ledus.S3G053500"
Ledus.S3	AUGUSTUS	CDS	4292608	4292883	0.68	+	0	transcript_id "Ledus.S3G053500.t1"; gene_id "Ledus.S3G053500"
Ledus.S3	AUGUSTUS	exon	4292608	4292883	.	+	.	transcript_id "Ledus.S3G053500.t1"; gene_id "Ledus.S3G053500"
Ledus.S3	AUGUSTUS	stop_codon	4292884	4292886	.	+	0	transcript_id "Ledus.S3G053500.t1"; gene_id "Ledus.S3G053500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5301.t1 is derived from g2740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23121018	23124798	.	-	.	Ledus.S1G272200
Ledus.S1	AUGUSTUS	transcript	23121018	23124798	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	stop_codon	23121015	23121017	.	-	0	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	CDS	23121018	23121328	1	-	2	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	exon	23121018	23121328	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	intron	23121329	23121457	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	CDS	23121458	23121977	1	-	0	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	exon	23121458	23121977	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	intron	23121978	23122110	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	CDS	23122111	23122238	1	-	2	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	exon	23122111	23122238	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	intron	23122239	23122361	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	CDS	23122362	23122676	1	-	2	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	exon	23122362	23122676	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	intron	23122677	23122820	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	CDS	23122821	23122865	1	-	2	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	exon	23122821	23122865	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	intron	23122866	23122993	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	CDS	23122994	23123495	1	-	0	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	exon	23122994	23123495	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	intron	23123496	23123596	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	CDS	23123597	23123733	0.99	-	2	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	exon	23123597	23123733	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	intron	23123734	23123910	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	CDS	23123911	23124225	1	-	2	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	exon	23123911	23124225	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	intron	23124226	23124317	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	CDS	23124318	23124481	0.77	-	1	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	exon	23124318	23124481	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	intron	23124482	23124589	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	CDS	23124590	23124798	0.64	-	0	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	exon	23124590	23124798	.	-	.	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
Ledus.S1	AUGUSTUS	start_codon	23124796	23124798	.	-	0	transcript_id "Ledus.S1G272200.t1"; gene_id "Ledus.S1G272200"
# This transcript jg3865.t2 is derived from g1301.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3866.t1 is derived from g1302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13255980	13260955	.	-	.	Ledus.S1G128700
Ledus.S1	AUGUSTUS	transcript	13255980	13260955	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	stop_codon	13255977	13255979	.	-	0	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	CDS	13255980	13256420	1	-	0	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	exon	13255980	13256420	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	intron	13256421	13256570	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	CDS	13256571	13256701	1	-	2	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	exon	13256571	13256701	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	intron	13256702	13256813	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	CDS	13256814	13257072	0.91	-	0	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	exon	13256814	13257072	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	intron	13257073	13257356	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	CDS	13257357	13257416	1	-	0	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	exon	13257357	13257416	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	intron	13257417	13257568	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	CDS	13257569	13258129	0.41	-	0	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	exon	13257569	13258129	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	intron	13258130	13258363	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	CDS	13258364	13258714	1	-	0	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	exon	13258364	13258714	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	intron	13258715	13258831	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	CDS	13258832	13258962	1	-	2	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	exon	13258832	13258962	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	intron	13258963	13259117	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	CDS	13259118	13259754	1	-	0	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	exon	13259118	13259754	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	intron	13259755	13259929	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	CDS	13259930	13260955	1	-	0	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	exon	13259930	13260955	.	-	.	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
Ledus.S1	AUGUSTUS	start_codon	13260953	13260955	.	-	0	transcript_id "Ledus.S1G128700.t1"; gene_id "Ledus.S1G128700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7222.t1 is derived from g6470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C13	AUGUSTUS	gene	152700	157428	.	-	.	Ledus.C13G000500
Ledus.C13	AUGUSTUS	transcript	152700	157428	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	stop_codon	152697	152699	.	-	0	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	CDS	152700	154797	0.63	-	1	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	exon	152700	154797	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	intron	154798	154901	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	CDS	154902	154982	0.38	-	1	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	exon	154902	154982	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	intron	154983	155706	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	CDS	155707	155750	0.55	-	0	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	exon	155707	155750	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	intron	155751	155912	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	CDS	155913	156211	0.97	-	2	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	exon	155913	156211	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	intron	156212	156300	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	CDS	156301	156414	0.79	-	2	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	exon	156301	156414	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	intron	156415	156528	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	CDS	156529	156735	0.54	-	2	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	exon	156529	156735	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	intron	156736	156878	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	CDS	156879	157428	0.33	-	0	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	exon	156879	157428	.	-	.	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
Ledus.C13	AUGUSTUS	start_codon	157426	157428	.	-	0	transcript_id "Ledus.C13G000500.t1"; gene_id "Ledus.C13G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13112.t1 is derived from g6922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5958046	5958276	.	-	.	Ledus.S6G017400
Ledus.S6	AUGUSTUS	transcript	5958046	5958276	.	-	.	transcript_id "Ledus.S6G017400.t1"; gene_id "Ledus.S6G017400"
Ledus.S6	AUGUSTUS	stop_codon	5958043	5958045	.	-	0	transcript_id "Ledus.S6G017400.t1"; gene_id "Ledus.S6G017400"
Ledus.S6	AUGUSTUS	CDS	5958046	5958276	0.87	-	0	transcript_id "Ledus.S6G017400.t1"; gene_id "Ledus.S6G017400"
Ledus.S6	AUGUSTUS	exon	5958046	5958276	.	-	.	transcript_id "Ledus.S6G017400.t1"; gene_id "Ledus.S6G017400"
Ledus.S6	AUGUSTUS	start_codon	5958274	5958276	.	-	0	transcript_id "Ledus.S6G017400.t1"; gene_id "Ledus.S6G017400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11166.t1 is derived from g4784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2325815	2326111	.	-	.	Ledus.S4G032200
Ledus.S4	AUGUSTUS	transcript	2325815	2326111	.	-	.	transcript_id "Ledus.S4G032200.t1"; gene_id "Ledus.S4G032200"
Ledus.S4	AUGUSTUS	stop_codon	2325812	2325814	.	-	0	transcript_id "Ledus.S4G032200.t1"; gene_id "Ledus.S4G032200"
Ledus.S4	AUGUSTUS	CDS	2325815	2326111	0.92	-	0	transcript_id "Ledus.S4G032200.t1"; gene_id "Ledus.S4G032200"
Ledus.S4	AUGUSTUS	exon	2325815	2326111	.	-	.	transcript_id "Ledus.S4G032200.t1"; gene_id "Ledus.S4G032200"
Ledus.S4	AUGUSTUS	start_codon	2326109	2326111	.	-	0	transcript_id "Ledus.S4G032200.t1"; gene_id "Ledus.S4G032200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12150.t1 is derived from g5769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9943158	9945449	.	-	.	Ledus.S4G130600
Ledus.S4	AUGUSTUS	transcript	9943158	9945449	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	stop_codon	9943155	9943157	.	-	0	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	CDS	9943158	9943262	0.96	-	0	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	exon	9943158	9943262	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	intron	9943263	9943348	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	CDS	9943349	9943443	1	-	2	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	exon	9943349	9943443	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	intron	9943444	9943535	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	CDS	9943536	9943674	0.86	-	0	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	exon	9943536	9943674	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	intron	9943675	9943727	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	CDS	9943728	9943855	0.35	-	2	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	exon	9943728	9943855	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	intron	9943856	9943960	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	CDS	9943961	9944031	0.99	-	1	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	exon	9943961	9944031	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	intron	9944032	9944112	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	CDS	9944113	9944279	1	-	0	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	exon	9944113	9944279	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	intron	9944280	9944409	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	CDS	9944410	9944529	0.99	-	0	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	exon	9944410	9944529	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	intron	9944530	9944617	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	CDS	9944618	9944702	0.99	-	1	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	exon	9944618	9944702	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	intron	9944703	9944823	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	CDS	9944824	9945449	0.31	-	0	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	exon	9944824	9945449	.	-	.	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
Ledus.S4	AUGUSTUS	start_codon	9945447	9945449	.	-	0	transcript_id "Ledus.S4G130600.t1"; gene_id "Ledus.S4G130600"
# This transcript jg884.t2 is derived from g7745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg885.t1 is derived from g7746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5964748	5964960	.	+	.	Ledus.S2G076700
Ledus.S2	AUGUSTUS	transcript	5964748	5964960	.	+	.	transcript_id "Ledus.S2G076700.t1"; gene_id "Ledus.S2G076700"
Ledus.S2	AUGUSTUS	start_codon	5964748	5964750	.	+	0	transcript_id "Ledus.S2G076700.t1"; gene_id "Ledus.S2G076700"
Ledus.S2	AUGUSTUS	CDS	5964748	5964960	1	+	0	transcript_id "Ledus.S2G076700.t1"; gene_id "Ledus.S2G076700"
Ledus.S2	AUGUSTUS	exon	5964748	5964960	.	+	.	transcript_id "Ledus.S2G076700.t1"; gene_id "Ledus.S2G076700"
Ledus.S2	AUGUSTUS	stop_codon	5964961	5964963	.	+	0	transcript_id "Ledus.S2G076700.t1"; gene_id "Ledus.S2G076700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10161.t1 is derived from g11191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13399642	13402640	.	+	.	Ledus.S3G163800
Ledus.S3	AUGUSTUS	transcript	13399642	13402640	.	+	.	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	start_codon	13399642	13399644	.	+	0	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	CDS	13399642	13399751	0.94	+	0	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	exon	13399642	13399751	.	+	.	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	intron	13399752	13399837	.	+	.	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	CDS	13399838	13400377	1	+	1	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	exon	13399838	13400377	.	+	.	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	intron	13400378	13400719	.	+	.	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	CDS	13400720	13401102	0.99	+	1	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	exon	13400720	13401102	.	+	.	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	intron	13401103	13401190	.	+	.	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	CDS	13401191	13401401	1	+	2	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	exon	13401191	13401401	.	+	.	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	intron	13401402	13401477	.	+	.	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	CDS	13401478	13402488	1	+	1	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	exon	13401478	13402488	.	+	.	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	intron	13402489	13402579	.	+	.	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	CDS	13402580	13402640	1	+	1	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	exon	13402580	13402640	.	+	.	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
Ledus.S3	AUGUSTUS	stop_codon	13402641	13402643	.	+	0	transcript_id "Ledus.S3G163800.t1"; gene_id "Ledus.S3G163800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9395.t1 is derived from g10425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6521926	6522369	.	+	.	Ledus.S3G087200
Ledus.S3	AUGUSTUS	transcript	6521926	6522369	.	+	.	transcript_id "Ledus.S3G087200.t1"; gene_id "Ledus.S3G087200"
Ledus.S3	AUGUSTUS	start_codon	6521926	6521928	.	+	0	transcript_id "Ledus.S3G087200.t1"; gene_id "Ledus.S3G087200"
Ledus.S3	AUGUSTUS	CDS	6521926	6522139	0.5	+	0	transcript_id "Ledus.S3G087200.t1"; gene_id "Ledus.S3G087200"
Ledus.S3	AUGUSTUS	exon	6521926	6522139	.	+	.	transcript_id "Ledus.S3G087200.t1"; gene_id "Ledus.S3G087200"
Ledus.S3	AUGUSTUS	intron	6522140	6522235	.	+	.	transcript_id "Ledus.S3G087200.t1"; gene_id "Ledus.S3G087200"
Ledus.S3	AUGUSTUS	CDS	6522236	6522369	0.45	+	2	transcript_id "Ledus.S3G087200.t1"; gene_id "Ledus.S3G087200"
Ledus.S3	AUGUSTUS	exon	6522236	6522369	.	+	.	transcript_id "Ledus.S3G087200.t1"; gene_id "Ledus.S3G087200"
Ledus.S3	AUGUSTUS	stop_codon	6522370	6522372	.	+	0	transcript_id "Ledus.S3G087200.t1"; gene_id "Ledus.S3G087200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10612.t1 is derived from g11642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16452977	16454098	.	-	.	Ledus.S3G208900
Ledus.S3	AUGUSTUS	transcript	16452977	16454098	.	-	.	transcript_id "Ledus.S3G208900.t1"; gene_id "Ledus.S3G208900"
Ledus.S3	AUGUSTUS	stop_codon	16452974	16452976	.	-	0	transcript_id "Ledus.S3G208900.t1"; gene_id "Ledus.S3G208900"
Ledus.S3	AUGUSTUS	CDS	16452977	16454098	0.62	-	0	transcript_id "Ledus.S3G208900.t1"; gene_id "Ledus.S3G208900"
Ledus.S3	AUGUSTUS	exon	16452977	16454098	.	-	.	transcript_id "Ledus.S3G208900.t1"; gene_id "Ledus.S3G208900"
Ledus.S3	AUGUSTUS	start_codon	16454096	16454098	.	-	0	transcript_id "Ledus.S3G208900.t1"; gene_id "Ledus.S3G208900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6684.t1 is derived from g4127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33218573	33219082	.	+	.	Ledus.S1G410500
Ledus.S1	AUGUSTUS	transcript	33218573	33219082	.	+	.	transcript_id "Ledus.S1G410500.t1"; gene_id "Ledus.S1G410500"
Ledus.S1	AUGUSTUS	start_codon	33218573	33218575	.	+	0	transcript_id "Ledus.S1G410500.t1"; gene_id "Ledus.S1G410500"
Ledus.S1	AUGUSTUS	CDS	33218573	33219082	0.69	+	0	transcript_id "Ledus.S1G410500.t1"; gene_id "Ledus.S1G410500"
Ledus.S1	AUGUSTUS	exon	33218573	33219082	.	+	.	transcript_id "Ledus.S1G410500.t1"; gene_id "Ledus.S1G410500"
Ledus.S1	AUGUSTUS	stop_codon	33219083	33219085	.	+	0	transcript_id "Ledus.S1G410500.t1"; gene_id "Ledus.S1G410500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11036.t1 is derived from g4654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1333945	1334250	.	-	.	Ledus.S4G019200
Ledus.S4	AUGUSTUS	transcript	1333945	1334250	.	-	.	transcript_id "Ledus.S4G019200.t1"; gene_id "Ledus.S4G019200"
Ledus.S4	AUGUSTUS	stop_codon	1333942	1333944	.	-	0	transcript_id "Ledus.S4G019200.t1"; gene_id "Ledus.S4G019200"
Ledus.S4	AUGUSTUS	CDS	1333945	1334250	0.7	-	0	transcript_id "Ledus.S4G019200.t1"; gene_id "Ledus.S4G019200"
Ledus.S4	AUGUSTUS	exon	1333945	1334250	.	-	.	transcript_id "Ledus.S4G019200.t1"; gene_id "Ledus.S4G019200"
Ledus.S4	AUGUSTUS	start_codon	1334248	1334250	.	-	0	transcript_id "Ledus.S4G019200.t1"; gene_id "Ledus.S4G019200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1726.t1 is derived from g8587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12158146	12159282	.	+	.	Ledus.S2G160800
Ledus.S2	AUGUSTUS	transcript	12158146	12159282	.	+	.	transcript_id "Ledus.S2G160800.t1"; gene_id "Ledus.S2G160800"
Ledus.S2	AUGUSTUS	start_codon	12158146	12158148	.	+	0	transcript_id "Ledus.S2G160800.t1"; gene_id "Ledus.S2G160800"
Ledus.S2	AUGUSTUS	CDS	12158146	12159282	0.97	+	0	transcript_id "Ledus.S2G160800.t1"; gene_id "Ledus.S2G160800"
Ledus.S2	AUGUSTUS	exon	12158146	12159282	.	+	.	transcript_id "Ledus.S2G160800.t1"; gene_id "Ledus.S2G160800"
Ledus.S2	AUGUSTUS	stop_codon	12159283	12159285	.	+	0	transcript_id "Ledus.S2G160800.t1"; gene_id "Ledus.S2G160800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg246.t1 is derived from g7107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1116819	1117195	.	-	.	Ledus.S2G012800
Ledus.S2	AUGUSTUS	transcript	1116819	1117195	.	-	.	transcript_id "Ledus.S2G012800.t1"; gene_id "Ledus.S2G012800"
Ledus.S2	AUGUSTUS	stop_codon	1116816	1116818	.	-	0	transcript_id "Ledus.S2G012800.t1"; gene_id "Ledus.S2G012800"
Ledus.S2	AUGUSTUS	CDS	1116819	1116856	0.44	-	2	transcript_id "Ledus.S2G012800.t1"; gene_id "Ledus.S2G012800"
Ledus.S2	AUGUSTUS	exon	1116819	1116856	.	-	.	transcript_id "Ledus.S2G012800.t1"; gene_id "Ledus.S2G012800"
Ledus.S2	AUGUSTUS	intron	1116857	1116933	.	-	.	transcript_id "Ledus.S2G012800.t1"; gene_id "Ledus.S2G012800"
Ledus.S2	AUGUSTUS	CDS	1116934	1117195	0.21	-	0	transcript_id "Ledus.S2G012800.t1"; gene_id "Ledus.S2G012800"
Ledus.S2	AUGUSTUS	exon	1116934	1117195	.	-	.	transcript_id "Ledus.S2G012800.t1"; gene_id "Ledus.S2G012800"
Ledus.S2	AUGUSTUS	start_codon	1117193	1117195	.	-	0	transcript_id "Ledus.S2G012800.t1"; gene_id "Ledus.S2G012800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5676.t1 is derived from g3115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25765411	25767430	.	-	.	Ledus.S1G309700
Ledus.S1	AUGUSTUS	transcript	25765411	25767430	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	stop_codon	25765408	25765410	.	-	0	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25765411	25765545	0.81	-	0	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25765411	25765545	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25765546	25765630	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25765631	25766026	0.91	-	0	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25765631	25766026	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25766027	25766124	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25766125	25766293	1	-	1	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25766125	25766293	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25766294	25766386	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25766387	25766586	1	-	0	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25766387	25766586	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25766587	25766681	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25766682	25766756	1	-	0	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25766682	25766756	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25766757	25766834	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25766835	25766981	1	-	0	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25766835	25766981	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25766982	25767196	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25767197	25767430	0.79	-	0	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25767197	25767430	.	-	.	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	start_codon	25767428	25767430	.	-	0	transcript_id "Ledus.S1G309700.t1"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	transcript	25765411	25767330	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	stop_codon	25765408	25765410	.	-	0	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25765411	25765545	0.73	-	0	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25765411	25765545	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25765546	25765630	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25765631	25766026	0.87	-	0	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25765631	25766026	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25766027	25766124	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25766125	25766293	1	-	1	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25766125	25766293	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25766294	25766386	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25766387	25766586	1	-	0	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25766387	25766586	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25766587	25766681	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25766682	25766756	1	-	0	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25766682	25766756	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25766757	25766834	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25766835	25766933	0.69	-	0	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25766835	25766933	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25766934	25766998	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25766999	25767041	0.78	-	1	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25766999	25767041	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	intron	25767042	25767196	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	CDS	25767197	25767330	0.37	-	0	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	exon	25767197	25767330	.	-	.	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
Ledus.S1	AUGUSTUS	start_codon	25767328	25767330	.	-	0	transcript_id "Ledus.S1G309700.t2"; gene_id "Ledus.S1G309700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5821.t1 is derived from g3263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27090909	27095444	.	+	.	Ledus.S1G324200
Ledus.S1	AUGUSTUS	transcript	27090909	27095444	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	start_codon	27090909	27090911	.	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27090909	27091301	1	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27090909	27091301	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27091302	27091460	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27091461	27091643	1	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27091461	27091643	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27091644	27091804	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27091805	27091873	1	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27091805	27091873	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27091874	27091959	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27091960	27092066	0.99	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27091960	27092066	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27092067	27092181	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27092182	27092260	1	+	1	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27092182	27092260	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27092261	27092352	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27092353	27092526	1	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27092353	27092526	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27092527	27092694	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27092695	27092843	0.96	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27092695	27092843	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27092844	27092944	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27092945	27093040	0.98	+	1	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27092945	27093040	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27093041	27093183	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27093184	27093286	0.97	+	1	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27093184	27093286	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27093287	27093395	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27093396	27093458	0.98	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27093396	27093458	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27093459	27093570	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27093571	27093632	1	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27093571	27093632	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27093633	27093786	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27093787	27093883	1	+	1	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27093787	27093883	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27093884	27093975	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27093976	27094094	0.97	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27093976	27094094	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27094095	27094195	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27094196	27094238	0.98	+	1	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27094196	27094238	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27094239	27094324	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27094325	27094426	1	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27094325	27094426	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27094427	27094515	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27094516	27094608	1	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27094516	27094608	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27094609	27094697	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27094698	27094781	1	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27094698	27094781	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27094782	27094931	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27094932	27095224	1	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27094932	27095224	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	intron	27095225	27095428	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	CDS	27095429	27095444	1	+	1	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	exon	27095429	27095444	.	+	.	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
Ledus.S1	AUGUSTUS	stop_codon	27095445	27095447	.	+	0	transcript_id "Ledus.S1G324200.t1"; gene_id "Ledus.S1G324200"
# This transcript jg8336.t2 is derived from g13008.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8337.t1 is derived from g13009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10876425	10877960	.	-	.	Ledus.S5G111500
Ledus.S5	AUGUSTUS	transcript	10876425	10877960	.	-	.	transcript_id "Ledus.S5G111500.t1"; gene_id "Ledus.S5G111500"
Ledus.S5	AUGUSTUS	stop_codon	10876422	10876424	.	-	0	transcript_id "Ledus.S5G111500.t1"; gene_id "Ledus.S5G111500"
Ledus.S5	AUGUSTUS	CDS	10876425	10876699	0.95	-	2	transcript_id "Ledus.S5G111500.t1"; gene_id "Ledus.S5G111500"
Ledus.S5	AUGUSTUS	exon	10876425	10876699	.	-	.	transcript_id "Ledus.S5G111500.t1"; gene_id "Ledus.S5G111500"
Ledus.S5	AUGUSTUS	intron	10876700	10876785	.	-	.	transcript_id "Ledus.S5G111500.t1"; gene_id "Ledus.S5G111500"
Ledus.S5	AUGUSTUS	CDS	10876786	10877566	0.99	-	0	transcript_id "Ledus.S5G111500.t1"; gene_id "Ledus.S5G111500"
Ledus.S5	AUGUSTUS	exon	10876786	10877566	.	-	.	transcript_id "Ledus.S5G111500.t1"; gene_id "Ledus.S5G111500"
Ledus.S5	AUGUSTUS	intron	10877567	10877702	.	-	.	transcript_id "Ledus.S5G111500.t1"; gene_id "Ledus.S5G111500"
Ledus.S5	AUGUSTUS	CDS	10877703	10877960	1	-	0	transcript_id "Ledus.S5G111500.t1"; gene_id "Ledus.S5G111500"
Ledus.S5	AUGUSTUS	exon	10877703	10877960	.	-	.	transcript_id "Ledus.S5G111500.t1"; gene_id "Ledus.S5G111500"
Ledus.S5	AUGUSTUS	start_codon	10877958	10877960	.	-	0	transcript_id "Ledus.S5G111500.t1"; gene_id "Ledus.S5G111500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7175.t1 is derived from g6706.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1964201	1965252	.	+	.	Ledus.C7G023600
Ledus.C7	AUGUSTUS	transcript	1964201	1965252	.	+	.	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	start_codon	1964201	1964203	.	+	0	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	CDS	1964201	1964296	0.94	+	0	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	exon	1964201	1964296	.	+	.	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	intron	1964297	1964555	.	+	.	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	CDS	1964556	1964643	0.53	+	0	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	exon	1964556	1964643	.	+	.	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	intron	1964644	1964721	.	+	.	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	CDS	1964722	1964876	0.44	+	2	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	exon	1964722	1964876	.	+	.	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	intron	1964877	1965042	.	+	.	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	CDS	1965043	1965252	0.51	+	0	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	exon	1965043	1965252	.	+	.	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	stop_codon	1965253	1965255	.	+	0	transcript_id "Ledus.C7G023600.t1"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	transcript	1964371	1965252	.	+	.	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	start_codon	1964371	1964373	.	+	0	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	CDS	1964371	1964460	0.29	+	0	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	exon	1964371	1964460	.	+	.	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	intron	1964461	1964555	.	+	.	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	CDS	1964556	1964643	0.54	+	0	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	exon	1964556	1964643	.	+	.	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	intron	1964644	1964721	.	+	.	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	CDS	1964722	1964876	0.45	+	2	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	exon	1964722	1964876	.	+	.	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	intron	1964877	1965042	.	+	.	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	CDS	1965043	1965252	0.49	+	0	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	exon	1965043	1965252	.	+	.	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
Ledus.C7	AUGUSTUS	stop_codon	1965253	1965255	.	+	0	transcript_id "Ledus.C7G023600.t2"; gene_id "Ledus.C7G023600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg721.t1 is derived from g7582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4460851	4461294	.	-	.	Ledus.S2G060300
Ledus.S2	AUGUSTUS	transcript	4460851	4461294	.	-	.	transcript_id "Ledus.S2G060300.t1"; gene_id "Ledus.S2G060300"
Ledus.S2	AUGUSTUS	stop_codon	4460848	4460850	.	-	0	transcript_id "Ledus.S2G060300.t1"; gene_id "Ledus.S2G060300"
Ledus.S2	AUGUSTUS	CDS	4460851	4460910	0.7	-	0	transcript_id "Ledus.S2G060300.t1"; gene_id "Ledus.S2G060300"
Ledus.S2	AUGUSTUS	exon	4460851	4460910	.	-	.	transcript_id "Ledus.S2G060300.t1"; gene_id "Ledus.S2G060300"
Ledus.S2	AUGUSTUS	intron	4460911	4461009	.	-	.	transcript_id "Ledus.S2G060300.t1"; gene_id "Ledus.S2G060300"
Ledus.S2	AUGUSTUS	CDS	4461010	4461110	0.5	-	2	transcript_id "Ledus.S2G060300.t1"; gene_id "Ledus.S2G060300"
Ledus.S2	AUGUSTUS	exon	4461010	4461110	.	-	.	transcript_id "Ledus.S2G060300.t1"; gene_id "Ledus.S2G060300"
Ledus.S2	AUGUSTUS	intron	4461111	4461245	.	-	.	transcript_id "Ledus.S2G060300.t1"; gene_id "Ledus.S2G060300"
Ledus.S2	AUGUSTUS	CDS	4461246	4461294	0.38	-	0	transcript_id "Ledus.S2G060300.t1"; gene_id "Ledus.S2G060300"
Ledus.S2	AUGUSTUS	exon	4461246	4461294	.	-	.	transcript_id "Ledus.S2G060300.t1"; gene_id "Ledus.S2G060300"
Ledus.S2	AUGUSTUS	start_codon	4461292	4461294	.	-	0	transcript_id "Ledus.S2G060300.t1"; gene_id "Ledus.S2G060300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2643.t1 is derived from g76.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1121692	1122965	.	-	.	Ledus.S1G006400
Ledus.S1	AUGUSTUS	transcript	1121692	1122965	.	-	.	transcript_id "Ledus.S1G006400.t1"; gene_id "Ledus.S1G006400"
Ledus.S1	AUGUSTUS	stop_codon	1121689	1121691	.	-	0	transcript_id "Ledus.S1G006400.t1"; gene_id "Ledus.S1G006400"
Ledus.S1	AUGUSTUS	CDS	1121692	1121965	0.99	-	1	transcript_id "Ledus.S1G006400.t1"; gene_id "Ledus.S1G006400"
Ledus.S1	AUGUSTUS	exon	1121692	1121965	.	-	.	transcript_id "Ledus.S1G006400.t1"; gene_id "Ledus.S1G006400"
Ledus.S1	AUGUSTUS	intron	1121966	1122054	.	-	.	transcript_id "Ledus.S1G006400.t1"; gene_id "Ledus.S1G006400"
Ledus.S1	AUGUSTUS	CDS	1122055	1122965	0.59	-	0	transcript_id "Ledus.S1G006400.t1"; gene_id "Ledus.S1G006400"
Ledus.S1	AUGUSTUS	exon	1122055	1122965	.	-	.	transcript_id "Ledus.S1G006400.t1"; gene_id "Ledus.S1G006400"
Ledus.S1	AUGUSTUS	start_codon	1122963	1122965	.	-	0	transcript_id "Ledus.S1G006400.t1"; gene_id "Ledus.S1G006400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1904.t1 is derived from g8767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13278127	13279219	.	+	.	Ledus.S2G178600
Ledus.S2	AUGUSTUS	transcript	13278127	13279219	.	+	.	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	start_codon	13278127	13278129	.	+	0	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	CDS	13278127	13278538	1	+	0	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	exon	13278127	13278538	.	+	.	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	intron	13278539	13278627	.	+	.	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	CDS	13278628	13278703	0.89	+	2	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	exon	13278628	13278703	.	+	.	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	intron	13278704	13278786	.	+	.	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	CDS	13278787	13278844	0.89	+	1	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	exon	13278787	13278844	.	+	.	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	intron	13278845	13278915	.	+	.	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	CDS	13278916	13278989	0.89	+	0	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	exon	13278916	13278989	.	+	.	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	intron	13278990	13279089	.	+	.	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	CDS	13279090	13279219	0.89	+	1	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	exon	13279090	13279219	.	+	.	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
Ledus.S2	AUGUSTUS	stop_codon	13279220	13279222	.	+	0	transcript_id "Ledus.S2G178600.t1"; gene_id "Ledus.S2G178600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1262.t1 is derived from g8123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8945992	8947277	.	-	.	Ledus.S2G114400
Ledus.S2	AUGUSTUS	transcript	8945992	8947277	.	-	.	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	stop_codon	8945989	8945991	.	-	0	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	CDS	8945992	8946234	1	-	0	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	exon	8945992	8946234	.	-	.	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	intron	8946235	8946321	.	-	.	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	CDS	8946322	8946551	1	-	2	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	exon	8946322	8946551	.	-	.	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	intron	8946552	8946646	.	-	.	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	CDS	8946647	8946899	1	-	0	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	exon	8946647	8946899	.	-	.	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	intron	8946900	8946968	.	-	.	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	CDS	8946969	8947277	0.8	-	0	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	exon	8946969	8947277	.	-	.	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
Ledus.S2	AUGUSTUS	start_codon	8947275	8947277	.	-	0	transcript_id "Ledus.S2G114400.t1"; gene_id "Ledus.S2G114400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6814.t1 is derived from g4258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34419552	34419950	.	+	.	Ledus.S1G423500
Ledus.S1	AUGUSTUS	transcript	34419552	34419950	.	+	.	transcript_id "Ledus.S1G423500.t1"; gene_id "Ledus.S1G423500"
Ledus.S1	AUGUSTUS	start_codon	34419552	34419554	.	+	0	transcript_id "Ledus.S1G423500.t1"; gene_id "Ledus.S1G423500"
Ledus.S1	AUGUSTUS	CDS	34419552	34419950	0.94	+	0	transcript_id "Ledus.S1G423500.t1"; gene_id "Ledus.S1G423500"
Ledus.S1	AUGUSTUS	exon	34419552	34419950	.	+	.	transcript_id "Ledus.S1G423500.t1"; gene_id "Ledus.S1G423500"
Ledus.S1	AUGUSTUS	stop_codon	34419951	34419953	.	+	0	transcript_id "Ledus.S1G423500.t1"; gene_id "Ledus.S1G423500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9673.t1 is derived from g10703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8971698	8974116	.	-	.	Ledus.S3G115000
Ledus.S3	AUGUSTUS	transcript	8971698	8974116	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	stop_codon	8971695	8971697	.	-	0	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	CDS	8971698	8971859	0.67	-	0	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	exon	8971698	8971859	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	intron	8971860	8971960	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	CDS	8971961	8972168	0.82	-	1	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	exon	8971961	8972168	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	intron	8972169	8972245	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	CDS	8972246	8972307	1	-	0	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	exon	8972246	8972307	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	intron	8972308	8972396	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	CDS	8972397	8972573	1	-	0	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	exon	8972397	8972573	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	intron	8972574	8972659	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	CDS	8972660	8972803	0.96	-	0	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	exon	8972660	8972803	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	intron	8972804	8972884	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	CDS	8972885	8973308	0.48	-	1	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	exon	8972885	8973308	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	intron	8973309	8973405	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	CDS	8973406	8973497	1	-	0	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	exon	8973406	8973497	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	intron	8973498	8973578	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	CDS	8973579	8973665	0.98	-	0	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	exon	8973579	8973665	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	intron	8973666	8973764	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	CDS	8973765	8973961	0.72	-	2	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	exon	8973765	8973961	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	intron	8973962	8974037	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	CDS	8974038	8974116	0.69	-	0	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	exon	8974038	8974116	.	-	.	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
Ledus.S3	AUGUSTUS	start_codon	8974114	8974116	.	-	0	transcript_id "Ledus.S3G115000.t1"; gene_id "Ledus.S3G115000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7645.t1 is derived from g12316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4790153	4791445	.	+	.	Ledus.S5G042300
Ledus.S5	AUGUSTUS	transcript	4790153	4791445	.	+	.	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	start_codon	4790153	4790155	.	+	0	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	CDS	4790153	4790425	0.51	+	0	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	exon	4790153	4790425	.	+	.	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	intron	4790426	4790595	.	+	.	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	CDS	4790596	4790676	0.98	+	0	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	exon	4790596	4790676	.	+	.	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	intron	4790677	4790767	.	+	.	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	CDS	4790768	4790871	1	+	0	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	exon	4790768	4790871	.	+	.	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	intron	4790872	4791007	.	+	.	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	CDS	4791008	4791106	0.61	+	1	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	exon	4791008	4791106	.	+	.	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	intron	4791107	4791243	.	+	.	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	CDS	4791244	4791445	0.7	+	1	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	exon	4791244	4791445	.	+	.	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
Ledus.S5	AUGUSTUS	stop_codon	4791446	4791448	.	+	0	transcript_id "Ledus.S5G042300.t1"; gene_id "Ledus.S5G042300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3893.t1 is derived from g1329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13461086	13461355	.	-	.	Ledus.S1G131400
Ledus.S1	AUGUSTUS	transcript	13461086	13461355	.	-	.	transcript_id "Ledus.S1G131400.t1"; gene_id "Ledus.S1G131400"
Ledus.S1	AUGUSTUS	stop_codon	13461083	13461085	.	-	0	transcript_id "Ledus.S1G131400.t1"; gene_id "Ledus.S1G131400"
Ledus.S1	AUGUSTUS	CDS	13461086	13461355	1	-	0	transcript_id "Ledus.S1G131400.t1"; gene_id "Ledus.S1G131400"
Ledus.S1	AUGUSTUS	exon	13461086	13461355	.	-	.	transcript_id "Ledus.S1G131400.t1"; gene_id "Ledus.S1G131400"
Ledus.S1	AUGUSTUS	start_codon	13461353	13461355	.	-	0	transcript_id "Ledus.S1G131400.t1"; gene_id "Ledus.S1G131400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1378.t1 is derived from g8239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9600644	9601153	.	+	.	Ledus.S2G126000
Ledus.S2	AUGUSTUS	transcript	9600644	9601153	.	+	.	transcript_id "Ledus.S2G126000.t1"; gene_id "Ledus.S2G126000"
Ledus.S2	AUGUSTUS	start_codon	9600644	9600646	.	+	0	transcript_id "Ledus.S2G126000.t1"; gene_id "Ledus.S2G126000"
Ledus.S2	AUGUSTUS	CDS	9600644	9601153	0.84	+	0	transcript_id "Ledus.S2G126000.t1"; gene_id "Ledus.S2G126000"
Ledus.S2	AUGUSTUS	exon	9600644	9601153	.	+	.	transcript_id "Ledus.S2G126000.t1"; gene_id "Ledus.S2G126000"
Ledus.S2	AUGUSTUS	stop_codon	9601154	9601156	.	+	0	transcript_id "Ledus.S2G126000.t1"; gene_id "Ledus.S2G126000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11572.t1 is derived from g5190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5334758	5336637	.	+	.	Ledus.S4G072800
Ledus.S4	AUGUSTUS	transcript	5334758	5336637	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	start_codon	5334758	5334760	.	+	0	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	CDS	5334758	5334908	1	+	0	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	exon	5334758	5334908	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	intron	5334909	5334984	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	CDS	5334985	5335079	1	+	2	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	exon	5334985	5335079	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	intron	5335080	5335172	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	CDS	5335173	5335283	1	+	0	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	exon	5335173	5335283	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	intron	5335284	5335374	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	CDS	5335375	5335437	1	+	0	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	exon	5335375	5335437	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	intron	5335438	5335514	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	CDS	5335515	5335608	1	+	0	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	exon	5335515	5335608	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	intron	5335609	5335808	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	CDS	5335809	5335906	1	+	2	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	exon	5335809	5335906	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	intron	5335907	5335988	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	CDS	5335989	5336090	1	+	0	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	exon	5335989	5336090	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	intron	5336091	5336160	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	CDS	5336161	5336274	1	+	0	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	exon	5336161	5336274	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	intron	5336275	5336369	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	CDS	5336370	5336444	1	+	0	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	exon	5336370	5336444	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	intron	5336445	5336538	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	CDS	5336539	5336637	1	+	0	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	exon	5336539	5336637	.	+	.	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
Ledus.S4	AUGUSTUS	stop_codon	5336638	5336640	.	+	0	transcript_id "Ledus.S4G072800.t1"; gene_id "Ledus.S4G072800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4883.t1 is derived from g2321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20511536	20515521	.	-	.	Ledus.S1G230400
Ledus.S1	AUGUSTUS	transcript	20511536	20515521	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	stop_codon	20511533	20511535	.	-	0	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20511536	20511668	1	-	1	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20511536	20511668	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20511669	20511739	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20511740	20511821	1	-	2	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20511740	20511821	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20511822	20511929	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20511930	20512026	0.91	-	0	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20511930	20512026	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20512027	20512115	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20512116	20512268	1	-	0	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20512116	20512268	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20512269	20512393	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20512394	20512510	1	-	0	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20512394	20512510	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20512511	20512665	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20512666	20512713	1	-	0	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20512666	20512713	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20512714	20512804	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20512805	20512924	1	-	0	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20512805	20512924	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20512925	20513116	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20513117	20513216	1	-	1	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20513117	20513216	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20513217	20513380	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20513381	20513554	0.98	-	1	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20513381	20513554	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20513555	20513717	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20513718	20513945	1	-	1	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20513718	20513945	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20513946	20514026	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20514027	20514113	1	-	1	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20514027	20514113	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20514114	20514201	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20514202	20514248	1	-	0	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20514202	20514248	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20514249	20514343	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20514344	20514481	1	-	0	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20514344	20514481	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20514482	20514590	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20514591	20514893	0.98	-	0	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20514591	20514893	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20514894	20514990	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20514991	20515177	1	-	1	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20514991	20515177	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20515178	20515259	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20515260	20515297	0.61	-	0	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20515260	20515297	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	intron	20515298	20515431	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	CDS	20515432	20515521	0.96	-	0	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	exon	20515432	20515521	.	-	.	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
Ledus.S1	AUGUSTUS	start_codon	20515519	20515521	.	-	0	transcript_id "Ledus.S1G230400.t1"; gene_id "Ledus.S1G230400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10957.t1 is derived from g4575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	898633	901457	.	-	.	Ledus.S4G011300
Ledus.S4	AUGUSTUS	transcript	898633	901457	.	-	.	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	stop_codon	898630	898632	.	-	0	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	CDS	898633	900434	0.87	-	2	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	exon	898633	900434	.	-	.	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	intron	900435	900529	.	-	.	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	CDS	900530	900948	0.58	-	1	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	exon	900530	900948	.	-	.	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	intron	900949	901076	.	-	.	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	CDS	901077	901115	0.7	-	1	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	exon	901077	901115	.	-	.	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	intron	901116	901287	.	-	.	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	CDS	901288	901457	0.62	-	0	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	exon	901288	901457	.	-	.	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
Ledus.S4	AUGUSTUS	start_codon	901455	901457	.	-	0	transcript_id "Ledus.S4G011300.t1"; gene_id "Ledus.S4G011300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1499.t1 is derived from g8360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10599165	10600247	.	-	.	Ledus.S2G138100
Ledus.S2	AUGUSTUS	transcript	10599165	10600247	.	-	.	transcript_id "Ledus.S2G138100.t1"; gene_id "Ledus.S2G138100"
Ledus.S2	AUGUSTUS	stop_codon	10599162	10599164	.	-	0	transcript_id "Ledus.S2G138100.t1"; gene_id "Ledus.S2G138100"
Ledus.S2	AUGUSTUS	CDS	10599165	10600247	0.48	-	0	transcript_id "Ledus.S2G138100.t1"; gene_id "Ledus.S2G138100"
Ledus.S2	AUGUSTUS	exon	10599165	10600247	.	-	.	transcript_id "Ledus.S2G138100.t1"; gene_id "Ledus.S2G138100"
Ledus.S2	AUGUSTUS	start_codon	10600245	10600247	.	-	0	transcript_id "Ledus.S2G138100.t1"; gene_id "Ledus.S2G138100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7430.t1 is derived from g12101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2518791	2519472	.	+	.	Ledus.S5G020800
Ledus.S5	AUGUSTUS	transcript	2518791	2519472	.	+	.	transcript_id "Ledus.S5G020800.t1"; gene_id "Ledus.S5G020800"
Ledus.S5	AUGUSTUS	start_codon	2518791	2518793	.	+	0	transcript_id "Ledus.S5G020800.t1"; gene_id "Ledus.S5G020800"
Ledus.S5	AUGUSTUS	CDS	2518791	2519036	0.97	+	0	transcript_id "Ledus.S5G020800.t1"; gene_id "Ledus.S5G020800"
Ledus.S5	AUGUSTUS	exon	2518791	2519036	.	+	.	transcript_id "Ledus.S5G020800.t1"; gene_id "Ledus.S5G020800"
Ledus.S5	AUGUSTUS	intron	2519037	2519133	.	+	.	transcript_id "Ledus.S5G020800.t1"; gene_id "Ledus.S5G020800"
Ledus.S5	AUGUSTUS	CDS	2519134	2519202	1	+	0	transcript_id "Ledus.S5G020800.t1"; gene_id "Ledus.S5G020800"
Ledus.S5	AUGUSTUS	exon	2519134	2519202	.	+	.	transcript_id "Ledus.S5G020800.t1"; gene_id "Ledus.S5G020800"
Ledus.S5	AUGUSTUS	intron	2519203	2519322	.	+	.	transcript_id "Ledus.S5G020800.t1"; gene_id "Ledus.S5G020800"
Ledus.S5	AUGUSTUS	CDS	2519323	2519472	0.99	+	0	transcript_id "Ledus.S5G020800.t1"; gene_id "Ledus.S5G020800"
Ledus.S5	AUGUSTUS	exon	2519323	2519472	.	+	.	transcript_id "Ledus.S5G020800.t1"; gene_id "Ledus.S5G020800"
Ledus.S5	AUGUSTUS	stop_codon	2519473	2519475	.	+	0	transcript_id "Ledus.S5G020800.t1"; gene_id "Ledus.S5G020800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9231.t1 is derived from g10261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5520258	5523570	.	-	.	Ledus.S3G070800
Ledus.S3	AUGUSTUS	transcript	5520258	5523570	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	stop_codon	5520255	5520257	.	-	0	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	CDS	5520258	5520444	0.64	-	1	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	exon	5520258	5520444	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	intron	5520445	5520590	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	CDS	5520591	5520641	0.67	-	1	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	exon	5520591	5520641	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	intron	5520642	5520811	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	CDS	5520812	5520897	0.76	-	0	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	exon	5520812	5520897	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	intron	5520898	5521170	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	CDS	5521171	5521274	0.76	-	2	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	exon	5521171	5521274	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	intron	5521275	5521374	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	CDS	5521375	5521468	0.91	-	0	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	exon	5521375	5521468	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	intron	5521469	5522019	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	CDS	5522020	5522818	0.89	-	1	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	exon	5522020	5522818	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	intron	5522819	5522908	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	CDS	5522909	5523061	0.98	-	1	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	exon	5522909	5523061	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	intron	5523062	5523163	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	CDS	5523164	5523570	0.68	-	0	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	exon	5523164	5523570	.	-	.	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
Ledus.S3	AUGUSTUS	start_codon	5523568	5523570	.	-	0	transcript_id "Ledus.S3G070800.t1"; gene_id "Ledus.S3G070800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2938.t1 is derived from g373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4663593	4664605	.	-	.	Ledus.S1G035900
Ledus.S1	AUGUSTUS	transcript	4663593	4664605	.	-	.	transcript_id "Ledus.S1G035900.t1"; gene_id "Ledus.S1G035900"
Ledus.S1	AUGUSTUS	stop_codon	4663590	4663592	.	-	0	transcript_id "Ledus.S1G035900.t1"; gene_id "Ledus.S1G035900"
Ledus.S1	AUGUSTUS	CDS	4663593	4663849	0.86	-	2	transcript_id "Ledus.S1G035900.t1"; gene_id "Ledus.S1G035900"
Ledus.S1	AUGUSTUS	exon	4663593	4663849	.	-	.	transcript_id "Ledus.S1G035900.t1"; gene_id "Ledus.S1G035900"
Ledus.S1	AUGUSTUS	intron	4663850	4663945	.	-	.	transcript_id "Ledus.S1G035900.t1"; gene_id "Ledus.S1G035900"
Ledus.S1	AUGUSTUS	CDS	4663946	4664332	1	-	2	transcript_id "Ledus.S1G035900.t1"; gene_id "Ledus.S1G035900"
Ledus.S1	AUGUSTUS	exon	4663946	4664332	.	-	.	transcript_id "Ledus.S1G035900.t1"; gene_id "Ledus.S1G035900"
Ledus.S1	AUGUSTUS	intron	4664333	4664421	.	-	.	transcript_id "Ledus.S1G035900.t1"; gene_id "Ledus.S1G035900"
Ledus.S1	AUGUSTUS	CDS	4664422	4664605	0.79	-	0	transcript_id "Ledus.S1G035900.t1"; gene_id "Ledus.S1G035900"
Ledus.S1	AUGUSTUS	exon	4664422	4664605	.	-	.	transcript_id "Ledus.S1G035900.t1"; gene_id "Ledus.S1G035900"
Ledus.S1	AUGUSTUS	start_codon	4664603	4664605	.	-	0	transcript_id "Ledus.S1G035900.t1"; gene_id "Ledus.S1G035900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2852.t1 is derived from g286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4201431	4203101	.	+	.	Ledus.S1G027300
Ledus.S1	AUGUSTUS	transcript	4201431	4203101	.	+	.	transcript_id "Ledus.S1G027300.t1"; gene_id "Ledus.S1G027300"
Ledus.S1	AUGUSTUS	start_codon	4201431	4201433	.	+	0	transcript_id "Ledus.S1G027300.t1"; gene_id "Ledus.S1G027300"
Ledus.S1	AUGUSTUS	CDS	4201431	4201806	0.9	+	0	transcript_id "Ledus.S1G027300.t1"; gene_id "Ledus.S1G027300"
Ledus.S1	AUGUSTUS	exon	4201431	4201806	.	+	.	transcript_id "Ledus.S1G027300.t1"; gene_id "Ledus.S1G027300"
Ledus.S1	AUGUSTUS	intron	4201807	4201894	.	+	.	transcript_id "Ledus.S1G027300.t1"; gene_id "Ledus.S1G027300"
Ledus.S1	AUGUSTUS	CDS	4201895	4202178	1	+	2	transcript_id "Ledus.S1G027300.t1"; gene_id "Ledus.S1G027300"
Ledus.S1	AUGUSTUS	exon	4201895	4202178	.	+	.	transcript_id "Ledus.S1G027300.t1"; gene_id "Ledus.S1G027300"
Ledus.S1	AUGUSTUS	intron	4202179	4202312	.	+	.	transcript_id "Ledus.S1G027300.t1"; gene_id "Ledus.S1G027300"
Ledus.S1	AUGUSTUS	CDS	4202313	4203101	0.9	+	0	transcript_id "Ledus.S1G027300.t1"; gene_id "Ledus.S1G027300"
Ledus.S1	AUGUSTUS	exon	4202313	4203101	.	+	.	transcript_id "Ledus.S1G027300.t1"; gene_id "Ledus.S1G027300"
Ledus.S1	AUGUSTUS	stop_codon	4203102	4203104	.	+	0	transcript_id "Ledus.S1G027300.t1"; gene_id "Ledus.S1G027300"
# This transcript jg7678.t2 is derived from g12349.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7679.t1 is derived from g12350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5145204	5146710	.	-	.	Ledus.S5G045700
Ledus.S5	AUGUSTUS	transcript	5145204	5146710	.	-	.	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	stop_codon	5145201	5145203	.	-	0	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	CDS	5145204	5145300	0.8	-	1	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	exon	5145204	5145300	.	-	.	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	intron	5145301	5145491	.	-	.	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	CDS	5145492	5145533	0.9	-	1	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	exon	5145492	5145533	.	-	.	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	intron	5145534	5146250	.	-	.	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	CDS	5146251	5146418	0.85	-	1	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	exon	5146251	5146418	.	-	.	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	intron	5146419	5146527	.	-	.	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	CDS	5146528	5146532	0.9	-	0	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	exon	5146528	5146532	.	-	.	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	intron	5146533	5146683	.	-	.	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	CDS	5146684	5146710	0.99	-	0	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	exon	5146684	5146710	.	-	.	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
Ledus.S5	AUGUSTUS	start_codon	5146708	5146710	.	-	0	transcript_id "Ledus.S5G045700.t1"; gene_id "Ledus.S5G045700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11916.t1 is derived from g5535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7738107	7739180	.	-	.	Ledus.S4G107200
Ledus.S4	AUGUSTUS	transcript	7738107	7739180	.	-	.	transcript_id "Ledus.S4G107200.t1"; gene_id "Ledus.S4G107200"
Ledus.S4	AUGUSTUS	stop_codon	7738104	7738106	.	-	0	transcript_id "Ledus.S4G107200.t1"; gene_id "Ledus.S4G107200"
Ledus.S4	AUGUSTUS	CDS	7738107	7739180	0.52	-	0	transcript_id "Ledus.S4G107200.t1"; gene_id "Ledus.S4G107200"
Ledus.S4	AUGUSTUS	exon	7738107	7739180	.	-	.	transcript_id "Ledus.S4G107200.t1"; gene_id "Ledus.S4G107200"
Ledus.S4	AUGUSTUS	start_codon	7739178	7739180	.	-	0	transcript_id "Ledus.S4G107200.t1"; gene_id "Ledus.S4G107200"
# This transcript jg3072.t2 is derived from g507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3073.t1 is derived from g508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5704461	5705980	.	-	.	Ledus.S1G049400
Ledus.S1	AUGUSTUS	transcript	5704461	5705980	.	-	.	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	stop_codon	5704458	5704460	.	-	0	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	CDS	5704461	5704758	0.98	-	1	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	exon	5704461	5704758	.	-	.	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	intron	5704759	5704859	.	-	.	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	CDS	5704860	5704977	1	-	2	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	exon	5704860	5704977	.	-	.	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	intron	5704978	5705247	.	-	.	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	CDS	5705248	5705314	1	-	0	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	exon	5705248	5705314	.	-	.	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	intron	5705315	5705476	.	-	.	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	CDS	5705477	5705552	1	-	1	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	exon	5705477	5705552	.	-	.	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	intron	5705553	5705753	.	-	.	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	CDS	5705754	5705980	0.91	-	0	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	exon	5705754	5705980	.	-	.	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
Ledus.S1	AUGUSTUS	start_codon	5705978	5705980	.	-	0	transcript_id "Ledus.S1G049400.t1"; gene_id "Ledus.S1G049400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg2143.t1 is derived from g9006.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15161793	15164705	.	-	.	Ledus.S2G202500
Ledus.S2	AUGUSTUS	transcript	15161793	15164705	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	stop_codon	15161790	15161792	.	-	0	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15161793	15162062	0.8	-	0	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15161793	15162062	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15162063	15162158	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15162159	15162305	0.87	-	0	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15162159	15162305	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15162306	15162398	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15162399	15162596	1	-	0	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15162399	15162596	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15162597	15162721	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15162722	15162949	1	-	0	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15162722	15162949	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15162950	15163141	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15163142	15163415	0.98	-	1	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15163142	15163415	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15163416	15163519	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15163520	15163723	0.99	-	1	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15163520	15163723	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15163724	15163888	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15163889	15163977	1	-	0	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15163889	15163977	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15163978	15164117	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15164118	15164188	1	-	2	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15164118	15164188	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15164189	15164328	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15164329	15164410	1	-	0	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15164329	15164410	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15164411	15164491	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15164492	15164554	1	-	0	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15164492	15164554	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15164555	15164642	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15164643	15164705	0.87	-	0	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15164643	15164705	.	-	.	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	start_codon	15164703	15164705	.	-	0	transcript_id "Ledus.S2G202500.t1"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	transcript	15161793	15164705	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	stop_codon	15161790	15161792	.	-	0	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15161793	15162062	0.74	-	0	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15161793	15162062	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15162063	15162158	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15162159	15162305	0.95	-	0	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15162159	15162305	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15162306	15162398	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15162399	15162596	1	-	0	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15162399	15162596	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15162597	15162721	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15162722	15162949	1	-	0	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15162722	15162949	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15162950	15163141	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15163142	15163415	0.95	-	1	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15163142	15163415	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15163416	15163519	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15163520	15163723	0.99	-	1	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15163520	15163723	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15163724	15163888	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15163889	15163977	1	-	0	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15163889	15163977	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15163978	15164075	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15164076	15164188	1	-	2	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15164076	15164188	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15164189	15164328	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15164329	15164410	1	-	0	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15164329	15164410	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15164411	15164491	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15164492	15164554	1	-	0	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15164492	15164554	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15164555	15164642	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15164643	15164705	0.85	-	0	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15164643	15164705	.	-	.	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	start_codon	15164703	15164705	.	-	0	transcript_id "Ledus.S2G202500.t2"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	transcript	15161793	15164705	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	stop_codon	15161790	15161792	.	-	0	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15161793	15162062	0.76	-	0	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15161793	15162062	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15162063	15162158	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15162159	15162305	0.86	-	0	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15162159	15162305	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15162306	15162398	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15162399	15162596	1	-	0	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15162399	15162596	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15162597	15162721	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15162722	15162949	1	-	0	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15162722	15162949	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15162950	15163141	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15163142	15163415	0.85	-	1	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15163142	15163415	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15163416	15163519	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15163520	15163712	0.38	-	2	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15163520	15163712	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15163713	15163888	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15163889	15163904	0.38	-	0	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15163889	15163904	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15163905	15163959	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15163960	15163977	0.37	-	0	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15163960	15163977	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15163978	15164117	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15164118	15164188	1	-	2	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15164118	15164188	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15164189	15164328	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15164329	15164410	1	-	0	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15164329	15164410	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15164411	15164491	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15164492	15164554	1	-	0	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15164492	15164554	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	intron	15164555	15164642	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	CDS	15164643	15164705	0.85	-	0	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	exon	15164643	15164705	.	-	.	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
Ledus.S2	AUGUSTUS	start_codon	15164703	15164705	.	-	0	transcript_id "Ledus.S2G202500.t3"; gene_id "Ledus.S2G202500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg775.t1 is derived from g7636.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4907839	4913350	.	-	.	Ledus.S2G065700
Ledus.S2	AUGUSTUS	transcript	4907839	4913350	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	stop_codon	4907836	4907838	.	-	0	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4907839	4908039	0.83	-	0	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4907839	4908039	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4908040	4908132	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4908133	4908282	1	-	0	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4908133	4908282	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4908283	4908488	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4908489	4908536	1	-	0	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4908489	4908536	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4908537	4908707	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4908708	4908787	1	-	2	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4908708	4908787	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4908788	4908883	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4908884	4908989	1	-	0	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4908884	4908989	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4908990	4909312	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4909313	4909443	0.96	-	2	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4909313	4909443	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4909444	4909569	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4909570	4909747	1	-	0	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4909570	4909747	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4909748	4909911	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4909912	4909975	1	-	1	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4909912	4909975	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4909976	4910106	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4910107	4910170	0.99	-	2	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4910107	4910170	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4910171	4910282	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4910283	4910453	0.99	-	2	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4910283	4910453	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4910454	4910675	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4910676	4910787	1	-	0	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4910676	4910787	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4910788	4910873	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4910874	4911113	0.71	-	0	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4910874	4911113	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4911114	4911221	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4911222	4911421	1	-	2	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4911222	4911421	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4911422	4911599	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4911600	4912909	0.43	-	1	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4911600	4912909	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4912910	4913089	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4913090	4913164	0.93	-	1	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4913090	4913164	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	intron	4913165	4913339	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	CDS	4913340	4913350	0.98	-	0	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	exon	4913340	4913350	.	-	.	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
Ledus.S2	AUGUSTUS	start_codon	4913348	4913350	.	-	0	transcript_id "Ledus.S2G065700.t1"; gene_id "Ledus.S2G065700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11845.t1 is derived from g5464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7279456	7284398	.	+	.	Ledus.S4G100100
Ledus.S4	AUGUSTUS	transcript	7279456	7284398	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	start_codon	7279456	7279458	.	+	0	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	CDS	7279456	7279722	0.52	+	0	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	exon	7279456	7279722	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	intron	7279723	7279890	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	CDS	7279891	7280152	0.81	+	0	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	exon	7279891	7280152	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	intron	7280153	7280245	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	CDS	7280246	7280379	0.94	+	2	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	exon	7280246	7280379	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	intron	7280380	7280509	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	CDS	7280510	7280584	1	+	0	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	exon	7280510	7280584	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	intron	7280585	7280751	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	CDS	7280752	7280853	1	+	0	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	exon	7280752	7280853	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	intron	7280854	7280949	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	CDS	7280950	7281056	1	+	0	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	exon	7280950	7281056	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	intron	7281057	7281139	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	CDS	7281140	7281227	1	+	1	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	exon	7281140	7281227	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	intron	7281228	7281321	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	CDS	7281322	7281386	0.8	+	0	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	exon	7281322	7281386	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	intron	7281387	7281433	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	CDS	7281434	7281491	0.25	+	1	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	exon	7281434	7281491	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	intron	7281492	7281679	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	CDS	7281680	7281751	0.11	+	0	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	exon	7281680	7281751	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	intron	7281752	7281921	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	CDS	7281922	7282527	0.81	+	0	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	exon	7281922	7282527	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	intron	7282528	7282637	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	CDS	7282638	7284398	0.97	+	0	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	exon	7282638	7284398	.	+	.	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
Ledus.S4	AUGUSTUS	stop_codon	7284399	7284401	.	+	0	transcript_id "Ledus.S4G100100.t1"; gene_id "Ledus.S4G100100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9261.t1 is derived from g10291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5640691	5641728	.	-	.	Ledus.S3G073800
Ledus.S3	AUGUSTUS	transcript	5640691	5641728	.	-	.	transcript_id "Ledus.S3G073800.t1"; gene_id "Ledus.S3G073800"
Ledus.S3	AUGUSTUS	stop_codon	5640688	5640690	.	-	0	transcript_id "Ledus.S3G073800.t1"; gene_id "Ledus.S3G073800"
Ledus.S3	AUGUSTUS	CDS	5640691	5641244	1	-	2	transcript_id "Ledus.S3G073800.t1"; gene_id "Ledus.S3G073800"
Ledus.S3	AUGUSTUS	exon	5640691	5641244	.	-	.	transcript_id "Ledus.S3G073800.t1"; gene_id "Ledus.S3G073800"
Ledus.S3	AUGUSTUS	intron	5641245	5641318	.	-	.	transcript_id "Ledus.S3G073800.t1"; gene_id "Ledus.S3G073800"
Ledus.S3	AUGUSTUS	CDS	5641319	5641537	1	-	2	transcript_id "Ledus.S3G073800.t1"; gene_id "Ledus.S3G073800"
Ledus.S3	AUGUSTUS	exon	5641319	5641537	.	-	.	transcript_id "Ledus.S3G073800.t1"; gene_id "Ledus.S3G073800"
Ledus.S3	AUGUSTUS	intron	5641538	5641613	.	-	.	transcript_id "Ledus.S3G073800.t1"; gene_id "Ledus.S3G073800"
Ledus.S3	AUGUSTUS	CDS	5641614	5641728	1	-	0	transcript_id "Ledus.S3G073800.t1"; gene_id "Ledus.S3G073800"
Ledus.S3	AUGUSTUS	exon	5641614	5641728	.	-	.	transcript_id "Ledus.S3G073800.t1"; gene_id "Ledus.S3G073800"
Ledus.S3	AUGUSTUS	start_codon	5641726	5641728	.	-	0	transcript_id "Ledus.S3G073800.t1"; gene_id "Ledus.S3G073800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9626.t1 is derived from g10656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8454074	8454595	.	+	.	Ledus.S3G110300
Ledus.S3	AUGUSTUS	transcript	8454074	8454595	.	+	.	transcript_id "Ledus.S3G110300.t1"; gene_id "Ledus.S3G110300"
Ledus.S3	AUGUSTUS	start_codon	8454074	8454076	.	+	0	transcript_id "Ledus.S3G110300.t1"; gene_id "Ledus.S3G110300"
Ledus.S3	AUGUSTUS	CDS	8454074	8454595	0.65	+	0	transcript_id "Ledus.S3G110300.t1"; gene_id "Ledus.S3G110300"
Ledus.S3	AUGUSTUS	exon	8454074	8454595	.	+	.	transcript_id "Ledus.S3G110300.t1"; gene_id "Ledus.S3G110300"
Ledus.S3	AUGUSTUS	stop_codon	8454596	8454598	.	+	0	transcript_id "Ledus.S3G110300.t1"; gene_id "Ledus.S3G110300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4922.t1 is derived from g2360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20649820	20650441	.	-	.	Ledus.S1G234300
Ledus.S1	AUGUSTUS	transcript	20649820	20650441	.	-	.	transcript_id "Ledus.S1G234300.t1"; gene_id "Ledus.S1G234300"
Ledus.S1	AUGUSTUS	stop_codon	20649817	20649819	.	-	0	transcript_id "Ledus.S1G234300.t1"; gene_id "Ledus.S1G234300"
Ledus.S1	AUGUSTUS	CDS	20649820	20650205	0.13	-	2	transcript_id "Ledus.S1G234300.t1"; gene_id "Ledus.S1G234300"
Ledus.S1	AUGUSTUS	exon	20649820	20650205	.	-	.	transcript_id "Ledus.S1G234300.t1"; gene_id "Ledus.S1G234300"
Ledus.S1	AUGUSTUS	intron	20650206	20650320	.	-	.	transcript_id "Ledus.S1G234300.t1"; gene_id "Ledus.S1G234300"
Ledus.S1	AUGUSTUS	CDS	20650321	20650441	0.62	-	0	transcript_id "Ledus.S1G234300.t1"; gene_id "Ledus.S1G234300"
Ledus.S1	AUGUSTUS	exon	20650321	20650441	.	-	.	transcript_id "Ledus.S1G234300.t1"; gene_id "Ledus.S1G234300"
Ledus.S1	AUGUSTUS	start_codon	20650439	20650441	.	-	0	transcript_id "Ledus.S1G234300.t1"; gene_id "Ledus.S1G234300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2949.t1 is derived from g384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4805750	4806022	.	-	.	Ledus.S1G037000
Ledus.S1	AUGUSTUS	transcript	4805750	4806022	.	-	.	transcript_id "Ledus.S1G037000.t1"; gene_id "Ledus.S1G037000"
Ledus.S1	AUGUSTUS	stop_codon	4805747	4805749	.	-	0	transcript_id "Ledus.S1G037000.t1"; gene_id "Ledus.S1G037000"
Ledus.S1	AUGUSTUS	CDS	4805750	4806022	0.94	-	0	transcript_id "Ledus.S1G037000.t1"; gene_id "Ledus.S1G037000"
Ledus.S1	AUGUSTUS	exon	4805750	4806022	.	-	.	transcript_id "Ledus.S1G037000.t1"; gene_id "Ledus.S1G037000"
Ledus.S1	AUGUSTUS	start_codon	4806020	4806022	.	-	0	transcript_id "Ledus.S1G037000.t1"; gene_id "Ledus.S1G037000"
# This transcript jg7283.t2 is derived from g11954.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7284.t1 is derived from g11955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	743308	751242	.	+	.	Ledus.S5G006200
Ledus.S5	AUGUSTUS	transcript	743308	751242	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	start_codon	743308	743310	.	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	743308	743350	0.46	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	743308	743350	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	743351	743423	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	743424	743497	0.47	+	2	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	743424	743497	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	743498	743615	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	743616	743979	0.83	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	743616	743979	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	743980	744197	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	744198	744258	1	+	2	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	744198	744258	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	744259	744624	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	744625	744703	1	+	1	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	744625	744703	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	744704	745060	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	745061	745140	1	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	745061	745140	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	745141	745242	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	745243	745337	1	+	1	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	745243	745337	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	745338	745437	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	745438	745537	1	+	2	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	745438	745537	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	745538	745685	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	745686	745755	1	+	1	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	745686	745755	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	745756	746177	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	746178	746279	1	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	746178	746279	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	746280	746514	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	746515	746596	1	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	746515	746596	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	746597	746701	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	746702	746881	0.93	+	2	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	746702	746881	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	746882	747011	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	747012	747273	1	+	2	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	747012	747273	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	747274	747368	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	747369	747627	1	+	1	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	747369	747627	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	747628	747955	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	747956	748126	0.96	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	747956	748126	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	748127	748230	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	748231	748469	0.98	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	748231	748469	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	748470	748746	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	748747	748831	1	+	1	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	748747	748831	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	748832	748950	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	748951	749049	1	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	748951	749049	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	749050	749259	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	749260	749459	0.99	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	749260	749459	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	749460	749591	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	749592	749667	1	+	1	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	749592	749667	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	749668	749767	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	749768	749903	1	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	749768	749903	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	749904	750104	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	750105	750244	1	+	2	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	750105	750244	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	intron	750245	751161	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	CDS	751162	751242	0.89	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	exon	751162	751242	.	+	.	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
Ledus.S5	AUGUSTUS	stop_codon	751243	751245	.	+	0	transcript_id "Ledus.S5G006200.t1"; gene_id "Ledus.S5G006200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7377.t1 is derived from g12048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1756702	1757594	.	+	.	Ledus.S5G015500
Ledus.S5	AUGUSTUS	transcript	1756702	1757594	.	+	.	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	start_codon	1756702	1756704	.	+	0	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	CDS	1756702	1756704	0.64	+	0	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	exon	1756702	1756704	.	+	.	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	intron	1756705	1756776	.	+	.	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	CDS	1756777	1757115	0.99	+	0	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	exon	1756777	1757115	.	+	.	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	intron	1757116	1757213	.	+	.	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	CDS	1757214	1757269	0.84	+	0	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	exon	1757214	1757269	.	+	.	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	intron	1757270	1757401	.	+	.	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	CDS	1757402	1757430	0.84	+	1	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	exon	1757402	1757430	.	+	.	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	intron	1757431	1757526	.	+	.	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	CDS	1757527	1757594	0.96	+	2	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	exon	1757527	1757594	.	+	.	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
Ledus.S5	AUGUSTUS	stop_codon	1757595	1757597	.	+	0	transcript_id "Ledus.S5G015500.t1"; gene_id "Ledus.S5G015500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5437.t1 is derived from g2876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24202803	24203276	.	-	.	Ledus.S1G285800
Ledus.S1	AUGUSTUS	transcript	24202803	24203276	.	-	.	transcript_id "Ledus.S1G285800.t1"; gene_id "Ledus.S1G285800"
Ledus.S1	AUGUSTUS	stop_codon	24202800	24202802	.	-	0	transcript_id "Ledus.S1G285800.t1"; gene_id "Ledus.S1G285800"
Ledus.S1	AUGUSTUS	CDS	24202803	24203276	0.37	-	0	transcript_id "Ledus.S1G285800.t1"; gene_id "Ledus.S1G285800"
Ledus.S1	AUGUSTUS	exon	24202803	24203276	.	-	.	transcript_id "Ledus.S1G285800.t1"; gene_id "Ledus.S1G285800"
Ledus.S1	AUGUSTUS	start_codon	24203274	24203276	.	-	0	transcript_id "Ledus.S1G285800.t1"; gene_id "Ledus.S1G285800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3064.t1 is derived from g499.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5612715	5622637	.	-	.	Ledus.S1G048500
Ledus.S1	AUGUSTUS	transcript	5612715	5622637	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	stop_codon	5612712	5612714	.	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5612715	5612839	0.97	-	2	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5612715	5612839	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5612840	5613004	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5613005	5613068	1	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5613005	5613068	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5613069	5613184	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5613185	5613878	0.72	-	1	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5613185	5613878	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5613879	5614101	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5614102	5614322	1	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5614102	5614322	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5614323	5614495	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5614496	5614676	0.98	-	1	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5614496	5614676	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5614677	5616215	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5616216	5616622	1	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5616216	5616622	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5616623	5616710	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5616711	5616903	1	-	1	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5616711	5616903	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5616904	5616978	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5616979	5617136	1	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5616979	5617136	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5617137	5617231	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5617232	5617387	1	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5617232	5617387	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5617388	5617472	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5617473	5617595	0.49	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5617473	5617595	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5617596	5617719	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5617720	5617865	0.25	-	2	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5617720	5617865	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5617866	5617985	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5617986	5618112	0.93	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5617986	5618112	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5618113	5618246	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5618247	5618810	0.93	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5618247	5618810	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5618811	5618904	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5618905	5619120	1	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5618905	5619120	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5619121	5619215	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5619216	5621308	0.84	-	2	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5619216	5621308	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5621309	5621469	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5621470	5621681	1	-	1	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5621470	5621681	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5621682	5621978	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5621979	5622019	1	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5621979	5622019	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5622020	5622119	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5622120	5622239	1	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5622120	5622239	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5622240	5622399	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5622400	5622480	1	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5622400	5622480	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	intron	5622481	5622631	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	CDS	5622632	5622637	0.19	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	exon	5622632	5622637	.	-	.	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
Ledus.S1	AUGUSTUS	start_codon	5622635	5622637	.	-	0	transcript_id "Ledus.S1G048500.t1"; gene_id "Ledus.S1G048500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5442.t1 is derived from g2881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24278931	24279969	.	-	.	Ledus.S1G286300
Ledus.S1	AUGUSTUS	transcript	24278931	24279969	.	-	.	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	stop_codon	24278928	24278930	.	-	0	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	CDS	24278931	24279203	0.96	-	0	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	exon	24278931	24279203	.	-	.	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	intron	24279204	24279284	.	-	.	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	CDS	24279285	24279392	0.99	-	0	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	exon	24279285	24279392	.	-	.	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	intron	24279393	24279462	.	-	.	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	CDS	24279463	24279609	0.94	-	0	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	exon	24279463	24279609	.	-	.	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	intron	24279610	24279711	.	-	.	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	CDS	24279712	24279969	0.43	-	0	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	exon	24279712	24279969	.	-	.	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
Ledus.S1	AUGUSTUS	start_codon	24279967	24279969	.	-	0	transcript_id "Ledus.S1G286300.t1"; gene_id "Ledus.S1G286300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6472.t1 is derived from g3915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31433640	31438897	.	-	.	Ledus.S1G389300
Ledus.S1	AUGUSTUS	transcript	31433640	31438897	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	stop_codon	31433637	31433639	.	-	0	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31433640	31433779	0.85	-	2	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31433640	31433779	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31433780	31434223	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31434224	31434302	1	-	0	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31434224	31434302	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31434303	31434396	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31434397	31434554	0.93	-	2	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31434397	31434554	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31434555	31434674	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31434675	31434747	0.99	-	0	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31434675	31434747	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31434748	31434931	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31434932	31435006	1	-	0	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31434932	31435006	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31435007	31435175	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31435176	31435499	1	-	0	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31435176	31435499	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31435500	31435784	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31435785	31435942	0.98	-	2	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31435785	31435942	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31435943	31436058	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31436059	31436282	0.95	-	1	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31436059	31436282	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31436283	31436380	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31436381	31436491	0.97	-	1	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31436381	31436491	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31436492	31436694	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31436695	31436802	1	-	1	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31436695	31436802	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31436803	31436916	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31436917	31437173	1	-	0	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31436917	31437173	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31437174	31437315	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31437316	31437441	0.89	-	0	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31437316	31437441	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31437442	31437546	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31437547	31437763	0.96	-	1	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31437547	31437763	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31437764	31437866	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31437867	31437991	1	-	0	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31437867	31437991	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31437992	31438178	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31438179	31438427	1	-	0	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31438179	31438427	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	intron	31438428	31438612	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	CDS	31438613	31438897	0.97	-	0	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	exon	31438613	31438897	.	-	.	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
Ledus.S1	AUGUSTUS	start_codon	31438895	31438897	.	-	0	transcript_id "Ledus.S1G389300.t1"; gene_id "Ledus.S1G389300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4717.t1 is derived from g2155.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19224670	19231728	.	-	.	Ledus.S1G213800
Ledus.S1	AUGUSTUS	transcript	19224670	19231728	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	stop_codon	19224667	19224669	.	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19224670	19224678	0.81	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19224670	19224678	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19224679	19225055	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19225056	19225134	0.63	-	1	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19225056	19225134	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19225135	19225391	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19225392	19225531	0.73	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19225392	19225531	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19225532	19225703	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19225704	19225784	0.81	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19225704	19225784	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19225785	19225869	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19225870	19225963	1	-	1	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19225870	19225963	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19225964	19226048	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19226049	19226116	1	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19226049	19226116	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19226117	19226288	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19226289	19226453	1	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19226289	19226453	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19226454	19226533	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19226534	19226678	1	-	1	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19226534	19226678	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19226679	19226777	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19226778	19226845	1	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19226778	19226845	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19226846	19227057	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19227058	19227147	1	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19227058	19227147	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19227148	19227249	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19227250	19227322	0.96	-	1	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19227250	19227322	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19227323	19227427	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19227428	19227519	0.93	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19227428	19227519	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19227520	19227633	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19227634	19227775	0.96	-	1	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19227634	19227775	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19227776	19227949	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19227950	19228452	0.87	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19227950	19228452	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19228453	19228627	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19228628	19228710	0.64	-	2	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19228628	19228710	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19228711	19229113	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19229114	19229273	0.85	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19229114	19229273	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19229274	19229381	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19229382	19229630	0.91	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19229382	19229630	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19229631	19229907	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19229908	19229987	1	-	2	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19229908	19229987	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19229988	19230115	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19230116	19230209	1	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19230116	19230209	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19230210	19230501	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19230502	19230557	1	-	2	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19230502	19230557	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19230558	19230965	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19230966	19231021	1	-	1	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19230966	19231021	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19231022	19231099	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19231100	19231188	1	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19231100	19231188	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19231189	19231283	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19231284	19231413	1	-	1	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19231284	19231413	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19231414	19231669	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19231670	19231728	0.97	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19231670	19231728	.	-	.	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	start_codon	19231726	19231728	.	-	0	transcript_id "Ledus.S1G213800.t1"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	transcript	19226668	19231728	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	stop_codon	19226665	19226667	.	-	0	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19226668	19226683	0.52	-	1	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19226668	19226683	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19226684	19226777	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19226778	19226845	1	-	0	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19226778	19226845	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19226846	19227057	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19227058	19227147	1	-	0	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19227058	19227147	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19227148	19227249	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19227250	19227322	0.97	-	1	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19227250	19227322	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19227323	19227427	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19227428	19227519	0.95	-	0	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19227428	19227519	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19227520	19227633	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19227634	19227775	0.98	-	1	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19227634	19227775	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19227776	19227949	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19227950	19228452	0.91	-	0	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19227950	19228452	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19228453	19228627	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19228628	19228710	0.64	-	2	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19228628	19228710	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19228711	19229113	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19229114	19229273	0.85	-	0	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19229114	19229273	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19229274	19229381	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19229382	19229630	0.92	-	0	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19229382	19229630	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19229631	19229907	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19229908	19229987	1	-	2	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19229908	19229987	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19229988	19230115	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19230116	19230209	1	-	0	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19230116	19230209	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19230210	19230501	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19230502	19230557	1	-	2	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19230502	19230557	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19230558	19230965	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19230966	19231021	1	-	1	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19230966	19231021	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19231022	19231099	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19231100	19231188	1	-	0	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19231100	19231188	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19231189	19231283	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19231284	19231413	1	-	1	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19231284	19231413	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	intron	19231414	19231669	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	CDS	19231670	19231728	0.99	-	0	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	exon	19231670	19231728	.	-	.	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
Ledus.S1	AUGUSTUS	start_codon	19231726	19231728	.	-	0	transcript_id "Ledus.S1G213800.t2"; gene_id "Ledus.S1G213800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11609.t1 is derived from g5227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5513013	5513741	.	+	.	Ledus.S4G076500
Ledus.S4	AUGUSTUS	transcript	5513013	5513741	.	+	.	transcript_id "Ledus.S4G076500.t1"; gene_id "Ledus.S4G076500"
Ledus.S4	AUGUSTUS	start_codon	5513013	5513015	.	+	0	transcript_id "Ledus.S4G076500.t1"; gene_id "Ledus.S4G076500"
Ledus.S4	AUGUSTUS	CDS	5513013	5513741	0.4	+	0	transcript_id "Ledus.S4G076500.t1"; gene_id "Ledus.S4G076500"
Ledus.S4	AUGUSTUS	exon	5513013	5513741	.	+	.	transcript_id "Ledus.S4G076500.t1"; gene_id "Ledus.S4G076500"
Ledus.S4	AUGUSTUS	stop_codon	5513742	5513744	.	+	0	transcript_id "Ledus.S4G076500.t1"; gene_id "Ledus.S4G076500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12065.t1 is derived from g5684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9285519	9287500	.	+	.	Ledus.S4G122100
Ledus.S4	AUGUSTUS	transcript	9285519	9287500	.	+	.	transcript_id "Ledus.S4G122100.t1"; gene_id "Ledus.S4G122100"
Ledus.S4	AUGUSTUS	start_codon	9285519	9285521	.	+	0	transcript_id "Ledus.S4G122100.t1"; gene_id "Ledus.S4G122100"
Ledus.S4	AUGUSTUS	CDS	9285519	9285687	1	+	0	transcript_id "Ledus.S4G122100.t1"; gene_id "Ledus.S4G122100"
Ledus.S4	AUGUSTUS	exon	9285519	9285687	.	+	.	transcript_id "Ledus.S4G122100.t1"; gene_id "Ledus.S4G122100"
Ledus.S4	AUGUSTUS	intron	9285688	9286388	.	+	.	transcript_id "Ledus.S4G122100.t1"; gene_id "Ledus.S4G122100"
Ledus.S4	AUGUSTUS	CDS	9286389	9286456	0.97	+	2	transcript_id "Ledus.S4G122100.t1"; gene_id "Ledus.S4G122100"
Ledus.S4	AUGUSTUS	exon	9286389	9286456	.	+	.	transcript_id "Ledus.S4G122100.t1"; gene_id "Ledus.S4G122100"
Ledus.S4	AUGUSTUS	intron	9286457	9286549	.	+	.	transcript_id "Ledus.S4G122100.t1"; gene_id "Ledus.S4G122100"
Ledus.S4	AUGUSTUS	CDS	9286550	9287500	0.48	+	0	transcript_id "Ledus.S4G122100.t1"; gene_id "Ledus.S4G122100"
Ledus.S4	AUGUSTUS	exon	9286550	9287500	.	+	.	transcript_id "Ledus.S4G122100.t1"; gene_id "Ledus.S4G122100"
Ledus.S4	AUGUSTUS	stop_codon	9287501	9287503	.	+	0	transcript_id "Ledus.S4G122100.t1"; gene_id "Ledus.S4G122100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12047.t1 is derived from g5666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9179409	9180067	.	+	.	Ledus.S4G120300
Ledus.S4	AUGUSTUS	transcript	9179409	9180067	.	+	.	transcript_id "Ledus.S4G120300.t1"; gene_id "Ledus.S4G120300"
Ledus.S4	AUGUSTUS	start_codon	9179409	9179411	.	+	0	transcript_id "Ledus.S4G120300.t1"; gene_id "Ledus.S4G120300"
Ledus.S4	AUGUSTUS	CDS	9179409	9179496	1	+	0	transcript_id "Ledus.S4G120300.t1"; gene_id "Ledus.S4G120300"
Ledus.S4	AUGUSTUS	exon	9179409	9179496	.	+	.	transcript_id "Ledus.S4G120300.t1"; gene_id "Ledus.S4G120300"
Ledus.S4	AUGUSTUS	intron	9179497	9179571	.	+	.	transcript_id "Ledus.S4G120300.t1"; gene_id "Ledus.S4G120300"
Ledus.S4	AUGUSTUS	CDS	9179572	9179796	1	+	2	transcript_id "Ledus.S4G120300.t1"; gene_id "Ledus.S4G120300"
Ledus.S4	AUGUSTUS	exon	9179572	9179796	.	+	.	transcript_id "Ledus.S4G120300.t1"; gene_id "Ledus.S4G120300"
Ledus.S4	AUGUSTUS	intron	9179797	9179873	.	+	.	transcript_id "Ledus.S4G120300.t1"; gene_id "Ledus.S4G120300"
Ledus.S4	AUGUSTUS	CDS	9179874	9180067	0.99	+	2	transcript_id "Ledus.S4G120300.t1"; gene_id "Ledus.S4G120300"
Ledus.S4	AUGUSTUS	exon	9179874	9180067	.	+	.	transcript_id "Ledus.S4G120300.t1"; gene_id "Ledus.S4G120300"
Ledus.S4	AUGUSTUS	stop_codon	9180068	9180070	.	+	0	transcript_id "Ledus.S4G120300.t1"; gene_id "Ledus.S4G120300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4884.t1 is derived from g2322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20516070	20520336	.	-	.	Ledus.S1G230500
Ledus.S1	AUGUSTUS	transcript	20516070	20520336	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	stop_codon	20516067	20516069	.	-	0	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20516070	20516246	0.37	-	0	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20516070	20516246	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20516247	20516407	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20516408	20516453	0.85	-	1	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20516408	20516453	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20516454	20516534	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20516535	20516568	0.99	-	2	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20516535	20516568	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20516569	20516646	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20516647	20516957	0.98	-	1	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20516647	20516957	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20516958	20517040	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20517041	20517091	0.99	-	1	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20517041	20517091	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20517092	20517314	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20517315	20517481	0.98	-	0	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20517315	20517481	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20517482	20517565	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20517566	20517685	1	-	0	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20517566	20517685	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20517686	20517816	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20517817	20517894	1	-	0	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20517817	20517894	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20517895	20518011	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20518012	20518101	1	-	0	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20518012	20518101	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20518102	20518246	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20518247	20518328	1	-	1	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20518247	20518328	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20518329	20518495	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20518496	20518563	1	-	0	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20518496	20518563	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20518564	20518654	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20518655	20518715	1	-	1	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20518655	20518715	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20518716	20518824	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20518825	20518901	1	-	0	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20518825	20518901	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20518902	20519112	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20519113	20519189	1	-	2	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20519113	20519189	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20519190	20519302	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20519303	20519398	0.92	-	2	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20519303	20519398	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20519399	20519505	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20519506	20519653	0.98	-	0	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20519506	20519653	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20519654	20519724	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20519725	20519775	1	-	0	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20519725	20519775	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	intron	20519776	20520219	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	CDS	20520220	20520336	0.89	-	0	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	exon	20520220	20520336	.	-	.	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
Ledus.S1	AUGUSTUS	start_codon	20520334	20520336	.	-	0	transcript_id "Ledus.S1G230500.t1"; gene_id "Ledus.S1G230500"
# This transcript jg4435.t2 is derived from g1871.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4436.t1 is derived from g1872.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17115279	17118647	.	+	.	Ledus.S1G185700
Ledus.S1	AUGUSTUS	transcript	17115279	17118647	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	start_codon	17115279	17115281	.	+	0	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	CDS	17115279	17115620	1	+	0	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	exon	17115279	17115620	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	intron	17115621	17115747	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	CDS	17115748	17116104	0.98	+	0	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	exon	17115748	17116104	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	intron	17116105	17116207	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	CDS	17116208	17116307	0.99	+	0	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	exon	17116208	17116307	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	intron	17116308	17116565	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	CDS	17116566	17117020	1	+	2	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	exon	17116566	17117020	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	intron	17117021	17117175	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	CDS	17117176	17117331	0.98	+	0	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	exon	17117176	17117331	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	intron	17117332	17117438	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	CDS	17117439	17117606	0.92	+	0	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	exon	17117439	17117606	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	intron	17117607	17117712	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	CDS	17117713	17117853	0.89	+	0	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	exon	17117713	17117853	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	intron	17117854	17117969	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	CDS	17117970	17118200	0.91	+	0	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	exon	17117970	17118200	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	intron	17118201	17118284	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	CDS	17118285	17118398	1	+	0	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	exon	17118285	17118398	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	intron	17118399	17118482	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	CDS	17118483	17118647	1	+	0	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	exon	17118483	17118647	.	+	.	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
Ledus.S1	AUGUSTUS	stop_codon	17118648	17118650	.	+	0	transcript_id "Ledus.S1G185700.t1"; gene_id "Ledus.S1G185700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3115.t1 is derived from g550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6119396	6124658	.	+	.	Ledus.S1G053600
Ledus.S1	AUGUSTUS	transcript	6119396	6124658	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	start_codon	6119396	6119398	.	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6119396	6119841	0.91	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6119396	6119841	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6119842	6119919	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6119920	6120061	1	+	1	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6119920	6120061	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6120062	6120161	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6120162	6120490	1	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6120162	6120490	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6120491	6120579	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6120580	6120661	1	+	1	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6120580	6120661	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6120662	6120749	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6120750	6121056	1	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6120750	6121056	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6121057	6121196	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6121197	6121255	1	+	2	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6121197	6121255	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6121256	6121401	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6121402	6121491	1	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6121402	6121491	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6121492	6121614	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6121615	6121706	1	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6121615	6121706	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6121707	6121907	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6121908	6122006	1	+	1	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6121908	6122006	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6122007	6122156	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6122157	6122234	1	+	1	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6122157	6122234	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6122235	6122368	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6122369	6122453	1	+	1	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6122369	6122453	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6122454	6122540	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6122541	6122599	1	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6122541	6122599	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6122600	6122682	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6122683	6122752	1	+	1	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6122683	6122752	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6122753	6122841	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6122842	6122933	1	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6122842	6122933	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6122934	6123056	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6123057	6123119	1	+	1	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6123057	6123119	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6123120	6123195	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6123196	6123262	1	+	1	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6123196	6123262	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6123263	6123348	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6123349	6123499	1	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6123349	6123499	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6123500	6123579	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6123580	6123656	1	+	2	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6123580	6123656	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6123657	6123750	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6123751	6123870	1	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6123751	6123870	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6123871	6123960	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6123961	6124119	1	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6123961	6124119	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6124120	6124214	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6124215	6124281	0.74	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6124215	6124281	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	intron	6124282	6124449	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	CDS	6124450	6124658	0.3	+	2	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	exon	6124450	6124658	.	+	.	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
Ledus.S1	AUGUSTUS	stop_codon	6124659	6124661	.	+	0	transcript_id "Ledus.S1G053600.t1"; gene_id "Ledus.S1G053600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9287.t1 is derived from g10317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5793549	5794223	.	+	.	Ledus.S3G076400
Ledus.S3	AUGUSTUS	transcript	5793549	5794223	.	+	.	transcript_id "Ledus.S3G076400.t1"; gene_id "Ledus.S3G076400"
Ledus.S3	AUGUSTUS	start_codon	5793549	5793551	.	+	0	transcript_id "Ledus.S3G076400.t1"; gene_id "Ledus.S3G076400"
Ledus.S3	AUGUSTUS	CDS	5793549	5794082	0.74	+	0	transcript_id "Ledus.S3G076400.t1"; gene_id "Ledus.S3G076400"
Ledus.S3	AUGUSTUS	exon	5793549	5794082	.	+	.	transcript_id "Ledus.S3G076400.t1"; gene_id "Ledus.S3G076400"
Ledus.S3	AUGUSTUS	intron	5794083	5794166	.	+	.	transcript_id "Ledus.S3G076400.t1"; gene_id "Ledus.S3G076400"
Ledus.S3	AUGUSTUS	CDS	5794167	5794223	1	+	0	transcript_id "Ledus.S3G076400.t1"; gene_id "Ledus.S3G076400"
Ledus.S3	AUGUSTUS	exon	5794167	5794223	.	+	.	transcript_id "Ledus.S3G076400.t1"; gene_id "Ledus.S3G076400"
Ledus.S3	AUGUSTUS	stop_codon	5794224	5794226	.	+	0	transcript_id "Ledus.S3G076400.t1"; gene_id "Ledus.S3G076400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9743.t1 is derived from g10773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9537438	9542290	.	+	.	Ledus.S3G122000
Ledus.S3	AUGUSTUS	transcript	9537438	9542290	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	start_codon	9537438	9537440	.	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9537438	9537821	0.98	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9537438	9537821	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9537822	9537911	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9537912	9538120	0.91	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9537912	9538120	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9538121	9538230	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9538231	9538377	1	+	1	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9538231	9538377	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9538378	9538458	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9538459	9538589	1	+	1	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9538459	9538589	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9538590	9538663	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9538664	9538770	1	+	2	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9538664	9538770	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9538771	9538847	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9538848	9538954	1	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9538848	9538954	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9538955	9539044	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9539045	9539183	1	+	1	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9539045	9539183	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9539184	9539267	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9539268	9539384	1	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9539268	9539384	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9539385	9539482	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9539483	9539590	1	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9539483	9539590	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9539591	9539674	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9539675	9539746	1	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9539675	9539746	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9539747	9539848	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9539849	9539971	0.99	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9539849	9539971	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9539972	9540091	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9540092	9540257	0.99	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9540092	9540257	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9540258	9540355	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9540356	9540477	1	+	2	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9540356	9540477	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9540478	9540601	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9540602	9540739	1	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9540602	9540739	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9540740	9540826	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9540827	9540963	1	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9540827	9540963	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9540964	9541053	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9541054	9541116	1	+	1	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9541054	9541116	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9541117	9541222	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9541223	9541286	0.93	+	1	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9541223	9541286	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9541287	9541364	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9541365	9541500	1	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9541365	9541500	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9541501	9541583	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9541584	9541657	1	+	2	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9541584	9541657	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9541658	9541743	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9541744	9541838	1	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9541744	9541838	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9541839	9541914	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9541915	9541946	1	+	1	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9541915	9541946	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	intron	9541947	9542072	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	CDS	9542073	9542290	0.79	+	2	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	exon	9542073	9542290	.	+	.	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
Ledus.S3	AUGUSTUS	stop_codon	9542291	9542293	.	+	0	transcript_id "Ledus.S3G122000.t1"; gene_id "Ledus.S3G122000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9553.t1 is derived from g10583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7757754	7759073	.	+	.	Ledus.S3G103000
Ledus.S3	AUGUSTUS	transcript	7757754	7759073	.	+	.	transcript_id "Ledus.S3G103000.t1"; gene_id "Ledus.S3G103000"
Ledus.S3	AUGUSTUS	start_codon	7757754	7757756	.	+	0	transcript_id "Ledus.S3G103000.t1"; gene_id "Ledus.S3G103000"
Ledus.S3	AUGUSTUS	CDS	7757754	7759073	1	+	0	transcript_id "Ledus.S3G103000.t1"; gene_id "Ledus.S3G103000"
Ledus.S3	AUGUSTUS	exon	7757754	7759073	.	+	.	transcript_id "Ledus.S3G103000.t1"; gene_id "Ledus.S3G103000"
Ledus.S3	AUGUSTUS	stop_codon	7759074	7759076	.	+	0	transcript_id "Ledus.S3G103000.t1"; gene_id "Ledus.S3G103000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12010.t1 is derived from g5629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8665809	8666066	.	+	.	Ledus.S4G116600
Ledus.S4	AUGUSTUS	transcript	8665809	8666066	.	+	.	transcript_id "Ledus.S4G116600.t1"; gene_id "Ledus.S4G116600"
Ledus.S4	AUGUSTUS	start_codon	8665809	8665811	.	+	0	transcript_id "Ledus.S4G116600.t1"; gene_id "Ledus.S4G116600"
Ledus.S4	AUGUSTUS	CDS	8665809	8666066	0.73	+	0	transcript_id "Ledus.S4G116600.t1"; gene_id "Ledus.S4G116600"
Ledus.S4	AUGUSTUS	exon	8665809	8666066	.	+	.	transcript_id "Ledus.S4G116600.t1"; gene_id "Ledus.S4G116600"
Ledus.S4	AUGUSTUS	stop_codon	8666067	8666069	.	+	0	transcript_id "Ledus.S4G116600.t1"; gene_id "Ledus.S4G116600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8096.t1 is derived from g12767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9126593	9127375	.	-	.	Ledus.S5G087400
Ledus.S5	AUGUSTUS	transcript	9126593	9127375	.	-	.	transcript_id "Ledus.S5G087400.t1"; gene_id "Ledus.S5G087400"
Ledus.S5	AUGUSTUS	stop_codon	9126590	9126592	.	-	0	transcript_id "Ledus.S5G087400.t1"; gene_id "Ledus.S5G087400"
Ledus.S5	AUGUSTUS	CDS	9126593	9126690	0.97	-	2	transcript_id "Ledus.S5G087400.t1"; gene_id "Ledus.S5G087400"
Ledus.S5	AUGUSTUS	exon	9126593	9126690	.	-	.	transcript_id "Ledus.S5G087400.t1"; gene_id "Ledus.S5G087400"
Ledus.S5	AUGUSTUS	intron	9126691	9126766	.	-	.	transcript_id "Ledus.S5G087400.t1"; gene_id "Ledus.S5G087400"
Ledus.S5	AUGUSTUS	CDS	9126767	9126864	1	-	1	transcript_id "Ledus.S5G087400.t1"; gene_id "Ledus.S5G087400"
Ledus.S5	AUGUSTUS	exon	9126767	9126864	.	-	.	transcript_id "Ledus.S5G087400.t1"; gene_id "Ledus.S5G087400"
Ledus.S5	AUGUSTUS	intron	9126865	9126941	.	-	.	transcript_id "Ledus.S5G087400.t1"; gene_id "Ledus.S5G087400"
Ledus.S5	AUGUSTUS	CDS	9126942	9127375	0.99	-	0	transcript_id "Ledus.S5G087400.t1"; gene_id "Ledus.S5G087400"
Ledus.S5	AUGUSTUS	exon	9126942	9127375	.	-	.	transcript_id "Ledus.S5G087400.t1"; gene_id "Ledus.S5G087400"
Ledus.S5	AUGUSTUS	start_codon	9127373	9127375	.	-	0	transcript_id "Ledus.S5G087400.t1"; gene_id "Ledus.S5G087400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11728.t1 is derived from g5347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6284782	6286719	.	+	.	Ledus.S4G088400
Ledus.S4	AUGUSTUS	transcript	6284782	6286719	.	+	.	transcript_id "Ledus.S4G088400.t1"; gene_id "Ledus.S4G088400"
Ledus.S4	AUGUSTUS	start_codon	6284782	6284784	.	+	0	transcript_id "Ledus.S4G088400.t1"; gene_id "Ledus.S4G088400"
Ledus.S4	AUGUSTUS	CDS	6284782	6286719	0.99	+	0	transcript_id "Ledus.S4G088400.t1"; gene_id "Ledus.S4G088400"
Ledus.S4	AUGUSTUS	exon	6284782	6286719	.	+	.	transcript_id "Ledus.S4G088400.t1"; gene_id "Ledus.S4G088400"
Ledus.S4	AUGUSTUS	stop_codon	6286720	6286722	.	+	0	transcript_id "Ledus.S4G088400.t1"; gene_id "Ledus.S4G088400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2227.t1 is derived from g9090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16178665	16179610	.	+	.	Ledus.S2G210900
Ledus.S2	AUGUSTUS	transcript	16178665	16179610	.	+	.	transcript_id "Ledus.S2G210900.t1"; gene_id "Ledus.S2G210900"
Ledus.S2	AUGUSTUS	start_codon	16178665	16178667	.	+	0	transcript_id "Ledus.S2G210900.t1"; gene_id "Ledus.S2G210900"
Ledus.S2	AUGUSTUS	CDS	16178665	16179081	0.79	+	0	transcript_id "Ledus.S2G210900.t1"; gene_id "Ledus.S2G210900"
Ledus.S2	AUGUSTUS	exon	16178665	16179081	.	+	.	transcript_id "Ledus.S2G210900.t1"; gene_id "Ledus.S2G210900"
Ledus.S2	AUGUSTUS	intron	16179082	16179251	.	+	.	transcript_id "Ledus.S2G210900.t1"; gene_id "Ledus.S2G210900"
Ledus.S2	AUGUSTUS	CDS	16179252	16179264	0.52	+	0	transcript_id "Ledus.S2G210900.t1"; gene_id "Ledus.S2G210900"
Ledus.S2	AUGUSTUS	exon	16179252	16179264	.	+	.	transcript_id "Ledus.S2G210900.t1"; gene_id "Ledus.S2G210900"
Ledus.S2	AUGUSTUS	intron	16179265	16179410	.	+	.	transcript_id "Ledus.S2G210900.t1"; gene_id "Ledus.S2G210900"
Ledus.S2	AUGUSTUS	CDS	16179411	16179610	0.52	+	2	transcript_id "Ledus.S2G210900.t1"; gene_id "Ledus.S2G210900"
Ledus.S2	AUGUSTUS	exon	16179411	16179610	.	+	.	transcript_id "Ledus.S2G210900.t1"; gene_id "Ledus.S2G210900"
Ledus.S2	AUGUSTUS	stop_codon	16179611	16179613	.	+	0	transcript_id "Ledus.S2G210900.t1"; gene_id "Ledus.S2G210900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2924.t1 is derived from g359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4598725	4600475	.	+	.	Ledus.S1G034500
Ledus.S1	AUGUSTUS	transcript	4598725	4600475	.	+	.	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	start_codon	4598725	4598727	.	+	0	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	CDS	4598725	4599129	0.43	+	0	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	exon	4598725	4599129	.	+	.	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	intron	4599130	4599242	.	+	.	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	CDS	4599243	4599320	1	+	0	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	exon	4599243	4599320	.	+	.	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	intron	4599321	4599413	.	+	.	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	CDS	4599414	4599494	1	+	0	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	exon	4599414	4599494	.	+	.	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	intron	4599495	4599578	.	+	.	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	CDS	4599579	4599733	1	+	0	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	exon	4599579	4599733	.	+	.	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	intron	4599734	4599835	.	+	.	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	CDS	4599836	4600284	0.95	+	1	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	exon	4599836	4600284	.	+	.	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	intron	4600285	4600383	.	+	.	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	CDS	4600384	4600475	0.55	+	2	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	exon	4600384	4600475	.	+	.	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
Ledus.S1	AUGUSTUS	stop_codon	4600476	4600478	.	+	0	transcript_id "Ledus.S1G034500.t1"; gene_id "Ledus.S1G034500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg87.t1 is derived from g9500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	365956	370094	.	-	.	Ledus.C8G004700
Ledus.C8	AUGUSTUS	transcript	365956	370094	.	-	.	transcript_id "Ledus.C8G004700.t1"; gene_id "Ledus.C8G004700"
Ledus.C8	AUGUSTUS	stop_codon	365953	365955	.	-	0	transcript_id "Ledus.C8G004700.t1"; gene_id "Ledus.C8G004700"
Ledus.C8	AUGUSTUS	CDS	365956	368224	0.97	-	1	transcript_id "Ledus.C8G004700.t1"; gene_id "Ledus.C8G004700"
Ledus.C8	AUGUSTUS	exon	365956	368224	.	-	.	transcript_id "Ledus.C8G004700.t1"; gene_id "Ledus.C8G004700"
Ledus.C8	AUGUSTUS	intron	368225	369687	.	-	.	transcript_id "Ledus.C8G004700.t1"; gene_id "Ledus.C8G004700"
Ledus.C8	AUGUSTUS	CDS	369688	370094	0.99	-	0	transcript_id "Ledus.C8G004700.t1"; gene_id "Ledus.C8G004700"
Ledus.C8	AUGUSTUS	exon	369688	370094	.	-	.	transcript_id "Ledus.C8G004700.t1"; gene_id "Ledus.C8G004700"
Ledus.C8	AUGUSTUS	start_codon	370092	370094	.	-	0	transcript_id "Ledus.C8G004700.t1"; gene_id "Ledus.C8G004700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3332.t1 is derived from g767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7530559	7532707	.	+	.	Ledus.S1G075300
Ledus.S1	AUGUSTUS	transcript	7530559	7532707	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	start_codon	7530559	7530561	.	+	0	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	CDS	7530559	7530601	0.98	+	0	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	exon	7530559	7530601	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	intron	7530602	7530860	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	CDS	7530861	7531270	0.97	+	2	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	exon	7530861	7531270	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	intron	7531271	7531342	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	CDS	7531343	7531459	1	+	0	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	exon	7531343	7531459	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	intron	7531460	7531537	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	CDS	7531538	7531753	1	+	0	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	exon	7531538	7531753	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	intron	7531754	7531846	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	CDS	7531847	7531940	1	+	0	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	exon	7531847	7531940	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	intron	7531941	7532020	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	CDS	7532021	7532095	1	+	2	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	exon	7532021	7532095	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	intron	7532096	7532166	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	CDS	7532167	7532245	1	+	2	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	exon	7532167	7532245	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	intron	7532246	7532315	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	CDS	7532316	7532412	1	+	1	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	exon	7532316	7532412	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	intron	7532413	7532483	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	CDS	7532484	7532566	1	+	0	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	exon	7532484	7532566	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	intron	7532567	7532643	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	CDS	7532644	7532707	1	+	1	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	exon	7532644	7532707	.	+	.	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
Ledus.S1	AUGUSTUS	stop_codon	7532708	7532710	.	+	0	transcript_id "Ledus.S1G075300.t1"; gene_id "Ledus.S1G075300"
# This transcript jg9798.t2 is derived from g10828.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9799.t1 is derived from g10829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9916117	9917149	.	-	.	Ledus.S3G127600
Ledus.S3	AUGUSTUS	transcript	9916117	9917149	.	-	.	transcript_id "Ledus.S3G127600.t1"; gene_id "Ledus.S3G127600"
Ledus.S3	AUGUSTUS	stop_codon	9916114	9916116	.	-	0	transcript_id "Ledus.S3G127600.t1"; gene_id "Ledus.S3G127600"
Ledus.S3	AUGUSTUS	CDS	9916117	9916898	1	-	2	transcript_id "Ledus.S3G127600.t1"; gene_id "Ledus.S3G127600"
Ledus.S3	AUGUSTUS	exon	9916117	9916898	.	-	.	transcript_id "Ledus.S3G127600.t1"; gene_id "Ledus.S3G127600"
Ledus.S3	AUGUSTUS	intron	9916899	9916992	.	-	.	transcript_id "Ledus.S3G127600.t1"; gene_id "Ledus.S3G127600"
Ledus.S3	AUGUSTUS	CDS	9916993	9917149	0.43	-	0	transcript_id "Ledus.S3G127600.t1"; gene_id "Ledus.S3G127600"
Ledus.S3	AUGUSTUS	exon	9916993	9917149	.	-	.	transcript_id "Ledus.S3G127600.t1"; gene_id "Ledus.S3G127600"
Ledus.S3	AUGUSTUS	start_codon	9917147	9917149	.	-	0	transcript_id "Ledus.S3G127600.t1"; gene_id "Ledus.S3G127600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6141.t1 is derived from g3584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29222616	29225816	.	-	.	Ledus.S1G356200
Ledus.S1	AUGUSTUS	transcript	29222616	29225816	.	-	.	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	stop_codon	29222613	29222615	.	-	0	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	CDS	29222616	29222676	0.96	-	1	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	exon	29222616	29222676	.	-	.	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	intron	29222677	29222787	.	-	.	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	CDS	29222788	29222951	0.98	-	0	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	exon	29222788	29222951	.	-	.	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	intron	29222952	29223121	.	-	.	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	CDS	29223122	29223235	1	-	0	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	exon	29223122	29223235	.	-	.	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	intron	29223236	29223408	.	-	.	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	CDS	29223409	29225027	0.99	-	2	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	exon	29223409	29225027	.	-	.	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	intron	29225028	29225174	.	-	.	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	CDS	29225175	29225340	1	-	0	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	exon	29225175	29225340	.	-	.	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	intron	29225341	29225420	.	-	.	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	CDS	29225421	29225816	1	-	0	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	exon	29225421	29225816	.	-	.	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
Ledus.S1	AUGUSTUS	start_codon	29225814	29225816	.	-	0	transcript_id "Ledus.S1G356200.t1"; gene_id "Ledus.S1G356200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1665.t1 is derived from g8526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11765098	11767148	.	-	.	Ledus.S2G154700
Ledus.S2	AUGUSTUS	transcript	11765098	11767148	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	stop_codon	11765095	11765097	.	-	0	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	CDS	11765098	11765274	0.99	-	0	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	exon	11765098	11765274	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	intron	11765275	11765367	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	CDS	11765368	11765451	1	-	0	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	exon	11765368	11765451	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	intron	11765452	11765572	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	CDS	11765573	11765727	1	-	2	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	exon	11765573	11765727	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	intron	11765728	11765801	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	CDS	11765802	11765871	1	-	0	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	exon	11765802	11765871	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	intron	11765872	11765954	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	CDS	11765955	11766130	1	-	2	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	exon	11765955	11766130	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	intron	11766131	11766218	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	CDS	11766219	11766386	1	-	2	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	exon	11766219	11766386	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	intron	11766387	11766461	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	CDS	11766462	11766541	1	-	1	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	exon	11766462	11766541	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	intron	11766542	11766634	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	CDS	11766635	11766868	1	-	1	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	exon	11766635	11766868	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	intron	11766869	11766957	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	CDS	11766958	11767148	0.97	-	0	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	exon	11766958	11767148	.	-	.	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
Ledus.S2	AUGUSTUS	start_codon	11767146	11767148	.	-	0	transcript_id "Ledus.S2G154700.t1"; gene_id "Ledus.S2G154700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg634.t1 is derived from g7495.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3822567	3823257	.	-	.	Ledus.S2G051600
Ledus.S2	AUGUSTUS	transcript	3822567	3823257	.	-	.	transcript_id "Ledus.S2G051600.t1"; gene_id "Ledus.S2G051600"
Ledus.S2	AUGUSTUS	stop_codon	3822564	3822566	.	-	0	transcript_id "Ledus.S2G051600.t1"; gene_id "Ledus.S2G051600"
Ledus.S2	AUGUSTUS	CDS	3822567	3822777	0.31	-	1	transcript_id "Ledus.S2G051600.t1"; gene_id "Ledus.S2G051600"
Ledus.S2	AUGUSTUS	exon	3822567	3822777	.	-	.	transcript_id "Ledus.S2G051600.t1"; gene_id "Ledus.S2G051600"
Ledus.S2	AUGUSTUS	intron	3822778	3822991	.	-	.	transcript_id "Ledus.S2G051600.t1"; gene_id "Ledus.S2G051600"
Ledus.S2	AUGUSTUS	CDS	3822992	3823257	0.43	-	0	transcript_id "Ledus.S2G051600.t1"; gene_id "Ledus.S2G051600"
Ledus.S2	AUGUSTUS	exon	3822992	3823257	.	-	.	transcript_id "Ledus.S2G051600.t1"; gene_id "Ledus.S2G051600"
Ledus.S2	AUGUSTUS	start_codon	3823255	3823257	.	-	0	transcript_id "Ledus.S2G051600.t1"; gene_id "Ledus.S2G051600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11427.t1 is derived from g5045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4236781	4239131	.	+	.	Ledus.S4G058300
Ledus.S4	AUGUSTUS	transcript	4236781	4239131	.	+	.	transcript_id "Ledus.S4G058300.t1"; gene_id "Ledus.S4G058300"
Ledus.S4	AUGUSTUS	start_codon	4236781	4236783	.	+	0	transcript_id "Ledus.S4G058300.t1"; gene_id "Ledus.S4G058300"
Ledus.S4	AUGUSTUS	CDS	4236781	4237441	0.98	+	0	transcript_id "Ledus.S4G058300.t1"; gene_id "Ledus.S4G058300"
Ledus.S4	AUGUSTUS	exon	4236781	4237441	.	+	.	transcript_id "Ledus.S4G058300.t1"; gene_id "Ledus.S4G058300"
Ledus.S4	AUGUSTUS	intron	4237442	4237734	.	+	.	transcript_id "Ledus.S4G058300.t1"; gene_id "Ledus.S4G058300"
Ledus.S4	AUGUSTUS	CDS	4237735	4239131	0.54	+	2	transcript_id "Ledus.S4G058300.t1"; gene_id "Ledus.S4G058300"
Ledus.S4	AUGUSTUS	exon	4237735	4239131	.	+	.	transcript_id "Ledus.S4G058300.t1"; gene_id "Ledus.S4G058300"
Ledus.S4	AUGUSTUS	stop_codon	4239132	4239134	.	+	0	transcript_id "Ledus.S4G058300.t1"; gene_id "Ledus.S4G058300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11494.t1 is derived from g5112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4920985	4926352	.	+	.	Ledus.S4G065000
Ledus.S4	AUGUSTUS	transcript	4920985	4926352	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	start_codon	4920985	4920987	.	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4920985	4921050	1	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4920985	4921050	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4921051	4921150	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4921151	4921223	1	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4921151	4921223	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4921224	4921327	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4921328	4921450	1	+	2	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4921328	4921450	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4921451	4921538	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4921539	4921708	1	+	2	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4921539	4921708	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4921709	4921804	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4921805	4921957	1	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4921805	4921957	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4921958	4922050	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4922051	4922248	1	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4922051	4922248	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4922249	4922344	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4922345	4922465	0.82	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4922345	4922465	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4922466	4922796	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4922797	4923149	0.66	+	2	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4922797	4923149	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4923150	4923278	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4923279	4923422	1	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4923279	4923422	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4923423	4923573	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4923574	4923708	1	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4923574	4923708	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4923709	4923854	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4923855	4923941	1	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4923855	4923941	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4923942	4924098	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4924099	4924227	0.88	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4924099	4924227	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4924228	4924337	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4924338	4924464	0.53	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4924338	4924464	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4924465	4924582	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4924583	4924708	0.98	+	2	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4924583	4924708	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4924709	4924815	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4924816	4924950	1	+	2	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4924816	4924950	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4924951	4925223	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4925224	4925408	1	+	2	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4925224	4925408	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4925409	4925541	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4925542	4925673	1	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4925542	4925673	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4925674	4925756	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4925757	4925892	1	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4925757	4925892	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4925893	4925964	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4925965	4926101	1	+	2	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4925965	4926101	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	intron	4926102	4926193	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	CDS	4926194	4926352	1	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	exon	4926194	4926352	.	+	.	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
Ledus.S4	AUGUSTUS	stop_codon	4926353	4926355	.	+	0	transcript_id "Ledus.S4G065000.t1"; gene_id "Ledus.S4G065000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4013.t1 is derived from g1449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14080111	14080323	.	+	.	Ledus.S1G143400
Ledus.S1	AUGUSTUS	transcript	14080111	14080323	.	+	.	transcript_id "Ledus.S1G143400.t1"; gene_id "Ledus.S1G143400"
Ledus.S1	AUGUSTUS	start_codon	14080111	14080113	.	+	0	transcript_id "Ledus.S1G143400.t1"; gene_id "Ledus.S1G143400"
Ledus.S1	AUGUSTUS	CDS	14080111	14080323	0.88	+	0	transcript_id "Ledus.S1G143400.t1"; gene_id "Ledus.S1G143400"
Ledus.S1	AUGUSTUS	exon	14080111	14080323	.	+	.	transcript_id "Ledus.S1G143400.t1"; gene_id "Ledus.S1G143400"
Ledus.S1	AUGUSTUS	stop_codon	14080324	14080326	.	+	0	transcript_id "Ledus.S1G143400.t1"; gene_id "Ledus.S1G143400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5350.t1 is derived from g2789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23569266	23571822	.	+	.	Ledus.S1G277100
Ledus.S1	AUGUSTUS	transcript	23569266	23571822	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	start_codon	23569266	23569268	.	+	0	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	CDS	23569266	23569443	0.41	+	0	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	exon	23569266	23569443	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	intron	23569444	23569524	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	CDS	23569525	23569563	0.52	+	2	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	exon	23569525	23569563	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	intron	23569564	23569806	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	CDS	23569807	23569891	0.32	+	2	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	exon	23569807	23569891	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	intron	23569892	23570014	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	CDS	23570015	23570221	0.39	+	1	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	exon	23570015	23570221	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	intron	23570222	23570513	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	CDS	23570514	23570756	0.53	+	1	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	exon	23570514	23570756	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	intron	23570757	23570878	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	CDS	23570879	23571105	0.48	+	1	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	exon	23570879	23571105	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	intron	23571106	23571364	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	CDS	23571365	23571436	0.31	+	2	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	exon	23571365	23571436	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	intron	23571437	23571541	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	CDS	23571542	23571822	0.44	+	2	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	exon	23571542	23571822	.	+	.	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
Ledus.S1	AUGUSTUS	stop_codon	23571823	23571825	.	+	0	transcript_id "Ledus.S1G277100.t1"; gene_id "Ledus.S1G277100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1650.t1 is derived from g8511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11663615	11664592	.	+	.	Ledus.S2G153200
Ledus.S2	AUGUSTUS	transcript	11663615	11664592	.	+	.	transcript_id "Ledus.S2G153200.t1"; gene_id "Ledus.S2G153200"
Ledus.S2	AUGUSTUS	start_codon	11663615	11663617	.	+	0	transcript_id "Ledus.S2G153200.t1"; gene_id "Ledus.S2G153200"
Ledus.S2	AUGUSTUS	CDS	11663615	11664009	0.84	+	0	transcript_id "Ledus.S2G153200.t1"; gene_id "Ledus.S2G153200"
Ledus.S2	AUGUSTUS	exon	11663615	11664009	.	+	.	transcript_id "Ledus.S2G153200.t1"; gene_id "Ledus.S2G153200"
Ledus.S2	AUGUSTUS	intron	11664010	11664126	.	+	.	transcript_id "Ledus.S2G153200.t1"; gene_id "Ledus.S2G153200"
Ledus.S2	AUGUSTUS	CDS	11664127	11664592	0.99	+	1	transcript_id "Ledus.S2G153200.t1"; gene_id "Ledus.S2G153200"
Ledus.S2	AUGUSTUS	exon	11664127	11664592	.	+	.	transcript_id "Ledus.S2G153200.t1"; gene_id "Ledus.S2G153200"
Ledus.S2	AUGUSTUS	stop_codon	11664593	11664595	.	+	0	transcript_id "Ledus.S2G153200.t1"; gene_id "Ledus.S2G153200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5867.t1 is derived from g3309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27443537	27444969	.	-	.	Ledus.S1G328800
Ledus.S1	AUGUSTUS	transcript	27443537	27444969	.	-	.	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	stop_codon	27443534	27443536	.	-	0	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	CDS	27443537	27443677	0.65	-	0	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	exon	27443537	27443677	.	-	.	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	intron	27443678	27443770	.	-	.	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	CDS	27443771	27443830	1	-	0	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	exon	27443771	27443830	.	-	.	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	intron	27443831	27443914	.	-	.	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	CDS	27443915	27444112	1	-	0	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	exon	27443915	27444112	.	-	.	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	intron	27444113	27444187	.	-	.	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	CDS	27444188	27444273	0.99	-	2	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	exon	27444188	27444273	.	-	.	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	intron	27444274	27444383	.	-	.	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	CDS	27444384	27444490	1	-	1	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	exon	27444384	27444490	.	-	.	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	intron	27444491	27444565	.	-	.	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	CDS	27444566	27444969	1	-	0	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	exon	27444566	27444969	.	-	.	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
Ledus.S1	AUGUSTUS	start_codon	27444967	27444969	.	-	0	transcript_id "Ledus.S1G328800.t1"; gene_id "Ledus.S1G328800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3318.t1 is derived from g753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7444238	7446101	.	+	.	Ledus.S1G073900
Ledus.S1	AUGUSTUS	transcript	7444238	7446101	.	+	.	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	start_codon	7444238	7444240	.	+	0	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	CDS	7444238	7444340	0.5	+	0	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	exon	7444238	7444340	.	+	.	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	intron	7444341	7444414	.	+	.	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	CDS	7444415	7444797	0.5	+	2	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	exon	7444415	7444797	.	+	.	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	intron	7444798	7444870	.	+	.	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	CDS	7444871	7445581	1	+	0	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	exon	7444871	7445581	.	+	.	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	intron	7445582	7445678	.	+	.	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	CDS	7445679	7446101	1	+	0	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	exon	7445679	7446101	.	+	.	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
Ledus.S1	AUGUSTUS	stop_codon	7446102	7446104	.	+	0	transcript_id "Ledus.S1G073900.t1"; gene_id "Ledus.S1G073900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7811.t1 is derived from g12482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6951495	6955086	.	-	.	Ledus.S5G058900
Ledus.S5	AUGUSTUS	transcript	6951495	6955086	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	stop_codon	6951492	6951494	.	-	0	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6951495	6951624	1	-	1	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6951495	6951624	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6951625	6951820	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6951821	6952043	1	-	2	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6951821	6952043	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6952044	6952214	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6952215	6952272	0.45	-	0	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6952215	6952272	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6952273	6952401	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6952402	6952721	0.67	-	2	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6952402	6952721	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6952722	6952804	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6952805	6952841	1	-	0	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6952805	6952841	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6952842	6952938	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6952939	6953084	0.97	-	2	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6952939	6953084	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6953085	6953211	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6953212	6953293	0.9	-	0	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6953212	6953293	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6953294	6953390	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6953391	6953425	0.77	-	2	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6953391	6953425	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6953426	6953530	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6953531	6953729	0.8	-	0	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6953531	6953729	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6953730	6953895	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6953896	6954105	1	-	0	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6953896	6954105	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6954106	6954254	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6954255	6954392	1	-	0	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6954255	6954392	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6954393	6954473	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6954474	6954597	1	-	1	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6954474	6954597	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6954598	6954700	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6954701	6954820	1	-	1	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6954701	6954820	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	intron	6954821	6954925	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	CDS	6954926	6955086	0.88	-	0	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	exon	6954926	6955086	.	-	.	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
Ledus.S5	AUGUSTUS	start_codon	6955084	6955086	.	-	0	transcript_id "Ledus.S5G058900.t1"; gene_id "Ledus.S5G058900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5018.t1 is derived from g2456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21145168	21146720	.	-	.	Ledus.S1G243900
Ledus.S1	AUGUSTUS	transcript	21145168	21146720	.	-	.	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	stop_codon	21145165	21145167	.	-	0	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	CDS	21145168	21145485	0.96	-	0	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	exon	21145168	21145485	.	-	.	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	intron	21145486	21145564	.	-	.	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	CDS	21145565	21145951	1	-	0	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	exon	21145565	21145951	.	-	.	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	intron	21145952	21146035	.	-	.	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	CDS	21146036	21146271	0.99	-	2	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	exon	21146036	21146271	.	-	.	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	intron	21146272	21146359	.	-	.	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	CDS	21146360	21146720	0.83	-	0	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	exon	21146360	21146720	.	-	.	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
Ledus.S1	AUGUSTUS	start_codon	21146718	21146720	.	-	0	transcript_id "Ledus.S1G243900.t1"; gene_id "Ledus.S1G243900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8284.t1 is derived from g12955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10430711	10431601	.	-	.	Ledus.S5G106200
Ledus.S5	AUGUSTUS	transcript	10430711	10431601	.	-	.	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	stop_codon	10430708	10430710	.	-	0	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	CDS	10430711	10430798	1	-	1	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	exon	10430711	10430798	.	-	.	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	intron	10430799	10430879	.	-	.	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	CDS	10430880	10431008	1	-	1	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	exon	10430880	10431008	.	-	.	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	intron	10431009	10431096	.	-	.	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	CDS	10431097	10431340	1	-	2	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	exon	10431097	10431340	.	-	.	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	intron	10431341	10431447	.	-	.	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	CDS	10431448	10431601	0.59	-	0	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	exon	10431448	10431601	.	-	.	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
Ledus.S5	AUGUSTUS	start_codon	10431599	10431601	.	-	0	transcript_id "Ledus.S5G106200.t1"; gene_id "Ledus.S5G106200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6231.t1 is derived from g3674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29771201	29772726	.	+	.	Ledus.S1G365200
Ledus.S1	AUGUSTUS	transcript	29771201	29772726	.	+	.	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	start_codon	29771201	29771203	.	+	0	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	CDS	29771201	29771203	1	+	0	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	exon	29771201	29771203	.	+	.	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	intron	29771204	29771467	.	+	.	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	CDS	29771468	29771545	1	+	0	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	exon	29771468	29771545	.	+	.	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	intron	29771546	29771766	.	+	.	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	CDS	29771767	29771947	1	+	0	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	exon	29771767	29771947	.	+	.	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	intron	29771948	29772114	.	+	.	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	CDS	29772115	29772212	1	+	2	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	exon	29772115	29772212	.	+	.	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	intron	29772213	29772300	.	+	.	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	CDS	29772301	29772726	1	+	0	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	exon	29772301	29772726	.	+	.	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
Ledus.S1	AUGUSTUS	stop_codon	29772727	29772729	.	+	0	transcript_id "Ledus.S1G365200.t1"; gene_id "Ledus.S1G365200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8186.t1 is derived from g12857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9723835	9724185	.	+	.	Ledus.S5G096400
Ledus.S5	AUGUSTUS	transcript	9723835	9724185	.	+	.	transcript_id "Ledus.S5G096400.t1"; gene_id "Ledus.S5G096400"
Ledus.S5	AUGUSTUS	start_codon	9723835	9723837	.	+	0	transcript_id "Ledus.S5G096400.t1"; gene_id "Ledus.S5G096400"
Ledus.S5	AUGUSTUS	CDS	9723835	9724185	1	+	0	transcript_id "Ledus.S5G096400.t1"; gene_id "Ledus.S5G096400"
Ledus.S5	AUGUSTUS	exon	9723835	9724185	.	+	.	transcript_id "Ledus.S5G096400.t1"; gene_id "Ledus.S5G096400"
Ledus.S5	AUGUSTUS	stop_codon	9724186	9724188	.	+	0	transcript_id "Ledus.S5G096400.t1"; gene_id "Ledus.S5G096400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10732.t1 is derived from g11762.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17403803	17404219	.	+	.	Ledus.S3G220900
Ledus.S3	AUGUSTUS	transcript	17403803	17404219	.	+	.	transcript_id "Ledus.S3G220900.t1"; gene_id "Ledus.S3G220900"
Ledus.S3	AUGUSTUS	start_codon	17403803	17403805	.	+	0	transcript_id "Ledus.S3G220900.t1"; gene_id "Ledus.S3G220900"
Ledus.S3	AUGUSTUS	CDS	17403803	17404219	0.91	+	0	transcript_id "Ledus.S3G220900.t1"; gene_id "Ledus.S3G220900"
Ledus.S3	AUGUSTUS	exon	17403803	17404219	.	+	.	transcript_id "Ledus.S3G220900.t1"; gene_id "Ledus.S3G220900"
Ledus.S3	AUGUSTUS	stop_codon	17404220	17404222	.	+	0	transcript_id "Ledus.S3G220900.t1"; gene_id "Ledus.S3G220900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10440.t1 is derived from g11470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15182923	15185538	.	+	.	Ledus.S3G191700
Ledus.S3	AUGUSTUS	transcript	15182923	15185538	.	+	.	transcript_id "Ledus.S3G191700.t1"; gene_id "Ledus.S3G191700"
Ledus.S3	AUGUSTUS	start_codon	15182923	15182925	.	+	0	transcript_id "Ledus.S3G191700.t1"; gene_id "Ledus.S3G191700"
Ledus.S3	AUGUSTUS	CDS	15182923	15183086	1	+	0	transcript_id "Ledus.S3G191700.t1"; gene_id "Ledus.S3G191700"
Ledus.S3	AUGUSTUS	exon	15182923	15183086	.	+	.	transcript_id "Ledus.S3G191700.t1"; gene_id "Ledus.S3G191700"
Ledus.S3	AUGUSTUS	intron	15183087	15183497	.	+	.	transcript_id "Ledus.S3G191700.t1"; gene_id "Ledus.S3G191700"
Ledus.S3	AUGUSTUS	CDS	15183498	15185538	0.98	+	1	transcript_id "Ledus.S3G191700.t1"; gene_id "Ledus.S3G191700"
Ledus.S3	AUGUSTUS	exon	15183498	15185538	.	+	.	transcript_id "Ledus.S3G191700.t1"; gene_id "Ledus.S3G191700"
Ledus.S3	AUGUSTUS	stop_codon	15185539	15185541	.	+	0	transcript_id "Ledus.S3G191700.t1"; gene_id "Ledus.S3G191700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9051.t1 is derived from g10081.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4192880	4193416	.	+	.	Ledus.S3G052800
Ledus.S3	AUGUSTUS	transcript	4192880	4193416	.	+	.	transcript_id "Ledus.S3G052800.t1"; gene_id "Ledus.S3G052800"
Ledus.S3	AUGUSTUS	start_codon	4192880	4192882	.	+	0	transcript_id "Ledus.S3G052800.t1"; gene_id "Ledus.S3G052800"
Ledus.S3	AUGUSTUS	CDS	4192880	4193009	0.33	+	0	transcript_id "Ledus.S3G052800.t1"; gene_id "Ledus.S3G052800"
Ledus.S3	AUGUSTUS	exon	4192880	4193009	.	+	.	transcript_id "Ledus.S3G052800.t1"; gene_id "Ledus.S3G052800"
Ledus.S3	AUGUSTUS	intron	4193010	4193144	.	+	.	transcript_id "Ledus.S3G052800.t1"; gene_id "Ledus.S3G052800"
Ledus.S3	AUGUSTUS	CDS	4193145	4193416	0.47	+	2	transcript_id "Ledus.S3G052800.t1"; gene_id "Ledus.S3G052800"
Ledus.S3	AUGUSTUS	exon	4193145	4193416	.	+	.	transcript_id "Ledus.S3G052800.t1"; gene_id "Ledus.S3G052800"
Ledus.S3	AUGUSTUS	stop_codon	4193417	4193419	.	+	0	transcript_id "Ledus.S3G052800.t1"; gene_id "Ledus.S3G052800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4124.t1 is derived from g1560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14834127	14835926	.	-	.	Ledus.S1G154500
Ledus.S1	AUGUSTUS	transcript	14834127	14835926	.	-	.	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	stop_codon	14834124	14834126	.	-	0	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	CDS	14834127	14834510	0.82	-	0	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	exon	14834127	14834510	.	-	.	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	intron	14834511	14834594	.	-	.	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	CDS	14834595	14834843	0.73	-	0	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	exon	14834595	14834843	.	-	.	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	intron	14834844	14834916	.	-	.	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	CDS	14834917	14835476	0.85	-	2	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	exon	14834917	14835476	.	-	.	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	intron	14835477	14835562	.	-	.	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	CDS	14835563	14835926	0.83	-	0	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	exon	14835563	14835926	.	-	.	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
Ledus.S1	AUGUSTUS	start_codon	14835924	14835926	.	-	0	transcript_id "Ledus.S1G154500.t1"; gene_id "Ledus.S1G154500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9771.t1 is derived from g10801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9707121	9707482	.	-	.	Ledus.S3G124800
Ledus.S3	AUGUSTUS	transcript	9707121	9707482	.	-	.	transcript_id "Ledus.S3G124800.t1"; gene_id "Ledus.S3G124800"
Ledus.S3	AUGUSTUS	stop_codon	9707118	9707120	.	-	0	transcript_id "Ledus.S3G124800.t1"; gene_id "Ledus.S3G124800"
Ledus.S3	AUGUSTUS	CDS	9707121	9707273	0.67	-	0	transcript_id "Ledus.S3G124800.t1"; gene_id "Ledus.S3G124800"
Ledus.S3	AUGUSTUS	exon	9707121	9707273	.	-	.	transcript_id "Ledus.S3G124800.t1"; gene_id "Ledus.S3G124800"
Ledus.S3	AUGUSTUS	intron	9707274	9707365	.	-	.	transcript_id "Ledus.S3G124800.t1"; gene_id "Ledus.S3G124800"
Ledus.S3	AUGUSTUS	CDS	9707366	9707482	0.6	-	0	transcript_id "Ledus.S3G124800.t1"; gene_id "Ledus.S3G124800"
Ledus.S3	AUGUSTUS	exon	9707366	9707482	.	-	.	transcript_id "Ledus.S3G124800.t1"; gene_id "Ledus.S3G124800"
Ledus.S3	AUGUSTUS	start_codon	9707480	9707482	.	-	0	transcript_id "Ledus.S3G124800.t1"; gene_id "Ledus.S3G124800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10211.t1 is derived from g11241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13616276	13617599	.	+	.	Ledus.S3G168800
Ledus.S3	AUGUSTUS	transcript	13616276	13617599	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	start_codon	13616276	13616278	.	+	0	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	CDS	13616276	13616417	0.99	+	0	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	exon	13616276	13616417	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	intron	13616418	13616511	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	CDS	13616512	13616555	1	+	2	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	exon	13616512	13616555	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	intron	13616556	13616643	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	CDS	13616644	13616700	1	+	0	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	exon	13616644	13616700	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	intron	13616701	13616922	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	CDS	13616923	13617020	1	+	0	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	exon	13616923	13617020	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	intron	13617021	13617093	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	CDS	13617094	13617202	1	+	1	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	exon	13617094	13617202	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	intron	13617203	13617281	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	CDS	13617282	13617353	0.91	+	0	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	exon	13617282	13617353	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	intron	13617354	13617464	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	CDS	13617465	13617599	0.89	+	0	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	exon	13617465	13617599	.	+	.	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
Ledus.S3	AUGUSTUS	stop_codon	13617600	13617602	.	+	0	transcript_id "Ledus.S3G168800.t1"; gene_id "Ledus.S3G168800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12978.t1 is derived from g6788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1512405	1513966	.	+	.	Ledus.S6G004000
Ledus.S6	AUGUSTUS	transcript	1512405	1513966	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	start_codon	1512405	1512407	.	+	0	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	CDS	1512405	1512480	0.99	+	0	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	exon	1512405	1512480	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	intron	1512481	1512870	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	CDS	1512871	1512886	1	+	2	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	exon	1512871	1512886	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	intron	1512887	1513031	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	CDS	1513032	1513162	1	+	1	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	exon	1513032	1513162	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	intron	1513163	1513297	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	CDS	1513298	1513418	1	+	2	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	exon	1513298	1513418	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	intron	1513419	1513512	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	CDS	1513513	1513616	1	+	1	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	exon	1513513	1513616	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	intron	1513617	1513717	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	CDS	1513718	1513839	1	+	2	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	exon	1513718	1513839	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	intron	1513840	1513918	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	CDS	1513919	1513966	1	+	0	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	exon	1513919	1513966	.	+	.	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
Ledus.S6	AUGUSTUS	stop_codon	1513967	1513969	.	+	0	transcript_id "Ledus.S6G004000.t1"; gene_id "Ledus.S6G004000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3571.t1 is derived from g1007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9707423	9712228	.	-	.	Ledus.S1G099200
Ledus.S1	AUGUSTUS	transcript	9707423	9712228	.	-	.	transcript_id "Ledus.S1G099200.t1"; gene_id "Ledus.S1G099200"
Ledus.S1	AUGUSTUS	stop_codon	9707420	9707422	.	-	0	transcript_id "Ledus.S1G099200.t1"; gene_id "Ledus.S1G099200"
Ledus.S1	AUGUSTUS	CDS	9707423	9710244	0.97	-	2	transcript_id "Ledus.S1G099200.t1"; gene_id "Ledus.S1G099200"
Ledus.S1	AUGUSTUS	exon	9707423	9710244	.	-	.	transcript_id "Ledus.S1G099200.t1"; gene_id "Ledus.S1G099200"
Ledus.S1	AUGUSTUS	intron	9710245	9710475	.	-	.	transcript_id "Ledus.S1G099200.t1"; gene_id "Ledus.S1G099200"
Ledus.S1	AUGUSTUS	CDS	9710476	9712228	0.9	-	0	transcript_id "Ledus.S1G099200.t1"; gene_id "Ledus.S1G099200"
Ledus.S1	AUGUSTUS	exon	9710476	9712228	.	-	.	transcript_id "Ledus.S1G099200.t1"; gene_id "Ledus.S1G099200"
Ledus.S1	AUGUSTUS	start_codon	9712226	9712228	.	-	0	transcript_id "Ledus.S1G099200.t1"; gene_id "Ledus.S1G099200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10486.t1 is derived from g11516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15559616	15566137	.	-	.	Ledus.S3G196300
Ledus.S3	AUGUSTUS	transcript	15559616	15566137	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	stop_codon	15559613	15559615	.	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15559616	15559882	0.55	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15559616	15559882	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15559883	15559996	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15559997	15560277	1	-	2	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15559997	15560277	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15560278	15560372	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15560373	15560616	0.96	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15560373	15560616	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15560617	15560730	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15560731	15560937	0.75	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15560731	15560937	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15560938	15561027	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15561028	15561246	1	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15561028	15561246	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15561247	15561383	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15561384	15561515	1	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15561384	15561515	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15561516	15561601	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15561602	15561699	1	-	2	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15561602	15561699	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15561700	15561997	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15561998	15562318	0.99	-	2	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15561998	15562318	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15562319	15562511	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15562512	15562749	0.99	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15562512	15562749	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15562750	15562967	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15562968	15563075	0.78	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15562968	15563075	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15563076	15563199	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15563200	15563259	0.98	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15563200	15563259	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15563260	15563345	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15563346	15563530	1	-	2	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15563346	15563530	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15563531	15563675	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15563676	15563725	1	-	1	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15563676	15563725	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15563726	15563974	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15563975	15564019	1	-	1	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15563975	15564019	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15564020	15564188	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15564189	15564254	1	-	1	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15564189	15564254	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15564255	15564402	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15564403	15564455	0.98	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15564403	15564455	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15564456	15564565	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15564566	15564683	0.9	-	1	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15564566	15564683	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15564684	15564871	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15564872	15564973	0.92	-	1	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15564872	15564973	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15564974	15565082	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15565083	15565282	0.35	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15565083	15565282	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15565283	15565361	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15565362	15565415	0.31	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15565362	15565415	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15565416	15565533	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15565534	15565625	0.9	-	2	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15565534	15565625	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15565626	15565733	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15565734	15565784	1	-	2	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15565734	15565784	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	intron	15565785	15565923	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	CDS	15565924	15566137	0.98	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	exon	15565924	15566137	.	-	.	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
Ledus.S3	AUGUSTUS	start_codon	15566135	15566137	.	-	0	transcript_id "Ledus.S3G196300.t1"; gene_id "Ledus.S3G196300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6571.t1 is derived from g4014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32448975	32449958	.	+	.	Ledus.S1G399200
Ledus.S1	AUGUSTUS	transcript	32448975	32449958	.	+	.	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	start_codon	32448975	32448977	.	+	0	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	CDS	32448975	32449011	0.54	+	0	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	exon	32448975	32449011	.	+	.	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	intron	32449012	32449111	.	+	.	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	CDS	32449112	32449161	0.87	+	2	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	exon	32449112	32449161	.	+	.	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	intron	32449162	32449266	.	+	.	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	CDS	32449267	32449371	0.78	+	0	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	exon	32449267	32449371	.	+	.	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	intron	32449372	32449787	.	+	.	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	CDS	32449788	32449958	0.97	+	0	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	exon	32449788	32449958	.	+	.	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
Ledus.S1	AUGUSTUS	stop_codon	32449959	32449961	.	+	0	transcript_id "Ledus.S1G399200.t1"; gene_id "Ledus.S1G399200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12950.t1 is derived from g6760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	668264	668557	.	-	.	Ledus.S6G001200
Ledus.S6	AUGUSTUS	transcript	668264	668557	.	-	.	transcript_id "Ledus.S6G001200.t1"; gene_id "Ledus.S6G001200"
Ledus.S6	AUGUSTUS	stop_codon	668261	668263	.	-	0	transcript_id "Ledus.S6G001200.t1"; gene_id "Ledus.S6G001200"
Ledus.S6	AUGUSTUS	CDS	668264	668557	0.73	-	0	transcript_id "Ledus.S6G001200.t1"; gene_id "Ledus.S6G001200"
Ledus.S6	AUGUSTUS	exon	668264	668557	.	-	.	transcript_id "Ledus.S6G001200.t1"; gene_id "Ledus.S6G001200"
Ledus.S6	AUGUSTUS	start_codon	668555	668557	.	-	0	transcript_id "Ledus.S6G001200.t1"; gene_id "Ledus.S6G001200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg459.t1 is derived from g7320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2682390	2683745	.	+	.	Ledus.S2G034100
Ledus.S2	AUGUSTUS	transcript	2682390	2683745	.	+	.	transcript_id "Ledus.S2G034100.t1"; gene_id "Ledus.S2G034100"
Ledus.S2	AUGUSTUS	start_codon	2682390	2682392	.	+	0	transcript_id "Ledus.S2G034100.t1"; gene_id "Ledus.S2G034100"
Ledus.S2	AUGUSTUS	CDS	2682390	2682488	0.91	+	0	transcript_id "Ledus.S2G034100.t1"; gene_id "Ledus.S2G034100"
Ledus.S2	AUGUSTUS	exon	2682390	2682488	.	+	.	transcript_id "Ledus.S2G034100.t1"; gene_id "Ledus.S2G034100"
Ledus.S2	AUGUSTUS	intron	2682489	2682592	.	+	.	transcript_id "Ledus.S2G034100.t1"; gene_id "Ledus.S2G034100"
Ledus.S2	AUGUSTUS	CDS	2682593	2682747	0.99	+	0	transcript_id "Ledus.S2G034100.t1"; gene_id "Ledus.S2G034100"
Ledus.S2	AUGUSTUS	exon	2682593	2682747	.	+	.	transcript_id "Ledus.S2G034100.t1"; gene_id "Ledus.S2G034100"
Ledus.S2	AUGUSTUS	intron	2682748	2682844	.	+	.	transcript_id "Ledus.S2G034100.t1"; gene_id "Ledus.S2G034100"
Ledus.S2	AUGUSTUS	CDS	2682845	2683745	1	+	1	transcript_id "Ledus.S2G034100.t1"; gene_id "Ledus.S2G034100"
Ledus.S2	AUGUSTUS	exon	2682845	2683745	.	+	.	transcript_id "Ledus.S2G034100.t1"; gene_id "Ledus.S2G034100"
Ledus.S2	AUGUSTUS	stop_codon	2683746	2683748	.	+	0	transcript_id "Ledus.S2G034100.t1"; gene_id "Ledus.S2G034100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5388.t1 is derived from g2827.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23969022	23969661	.	-	.	Ledus.S1G280900
Ledus.S1	AUGUSTUS	transcript	23969022	23969661	.	-	.	transcript_id "Ledus.S1G280900.t1"; gene_id "Ledus.S1G280900"
Ledus.S1	AUGUSTUS	stop_codon	23969019	23969021	.	-	0	transcript_id "Ledus.S1G280900.t1"; gene_id "Ledus.S1G280900"
Ledus.S1	AUGUSTUS	CDS	23969022	23969170	1	-	2	transcript_id "Ledus.S1G280900.t1"; gene_id "Ledus.S1G280900"
Ledus.S1	AUGUSTUS	exon	23969022	23969170	.	-	.	transcript_id "Ledus.S1G280900.t1"; gene_id "Ledus.S1G280900"
Ledus.S1	AUGUSTUS	intron	23969171	23969258	.	-	.	transcript_id "Ledus.S1G280900.t1"; gene_id "Ledus.S1G280900"
Ledus.S1	AUGUSTUS	CDS	23969259	23969396	1	-	2	transcript_id "Ledus.S1G280900.t1"; gene_id "Ledus.S1G280900"
Ledus.S1	AUGUSTUS	exon	23969259	23969396	.	-	.	transcript_id "Ledus.S1G280900.t1"; gene_id "Ledus.S1G280900"
Ledus.S1	AUGUSTUS	intron	23969397	23969495	.	-	.	transcript_id "Ledus.S1G280900.t1"; gene_id "Ledus.S1G280900"
Ledus.S1	AUGUSTUS	CDS	23969496	23969661	0.91	-	0	transcript_id "Ledus.S1G280900.t1"; gene_id "Ledus.S1G280900"
Ledus.S1	AUGUSTUS	exon	23969496	23969661	.	-	.	transcript_id "Ledus.S1G280900.t1"; gene_id "Ledus.S1G280900"
Ledus.S1	AUGUSTUS	start_codon	23969659	23969661	.	-	0	transcript_id "Ledus.S1G280900.t1"; gene_id "Ledus.S1G280900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10180.t1 is derived from g11210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13469232	13470367	.	-	.	Ledus.S3G165700
Ledus.S3	AUGUSTUS	transcript	13469232	13470367	.	-	.	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	stop_codon	13469229	13469231	.	-	0	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	CDS	13469232	13469334	0.95	-	1	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	exon	13469232	13469334	.	-	.	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	intron	13469335	13469494	.	-	.	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	CDS	13469495	13469628	1	-	0	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	exon	13469495	13469628	.	-	.	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	intron	13469629	13469718	.	-	.	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	CDS	13469719	13469805	1	-	0	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	exon	13469719	13469805	.	-	.	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	intron	13469806	13469904	.	-	.	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	CDS	13469905	13470264	0.99	-	0	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	exon	13469905	13470264	.	-	.	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	intron	13470265	13470343	.	-	.	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	CDS	13470344	13470367	0.76	-	0	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	exon	13470344	13470367	.	-	.	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
Ledus.S3	AUGUSTUS	start_codon	13470365	13470367	.	-	0	transcript_id "Ledus.S3G165700.t1"; gene_id "Ledus.S3G165700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6978.t1 is derived from g6509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	512592	518887	.	+	.	Ledus.C7G003900
Ledus.C7	AUGUSTUS	transcript	512592	518887	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	start_codon	512592	512594	.	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	512592	512729	0.33	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	512592	512729	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	512730	512874	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	512875	512971	0.42	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	512875	512971	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	512972	513085	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	513086	513200	0.97	+	2	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	513086	513200	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	513201	513396	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	513397	513496	1	+	1	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	513397	513496	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	513497	513580	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	513581	513649	1	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	513581	513649	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	513650	513802	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	513803	514039	0.99	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	513803	514039	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	514040	514114	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	514115	514292	1	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	514115	514292	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	514293	514392	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	514393	514525	1	+	2	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	514393	514525	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	514526	514684	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	514685	514847	1	+	1	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	514685	514847	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	514848	514955	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	514956	515106	0.99	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	514956	515106	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	515107	515259	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	515260	515360	1	+	2	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	515260	515360	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	515361	515623	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	515624	515782	1	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	515624	515782	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	515783	515915	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	515916	515981	1	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	515916	515981	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	515982	516072	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	516073	516141	1	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	516073	516141	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	516142	516366	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	516367	516471	1	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	516367	516471	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	516472	516636	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	516637	516765	1	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	516637	516765	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	516766	516926	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	516927	517074	1	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	516927	517074	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	517075	517284	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	517285	517292	0.98	+	2	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	517285	517292	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	517293	517401	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	517402	517542	1	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	517402	517542	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	517543	517624	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	517625	517750	1	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	517625	517750	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	517751	517846	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	517847	517912	1	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	517847	517912	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	517913	518010	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	518011	518395	0.95	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	518011	518395	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	518396	518497	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	518498	518688	0.86	+	2	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	518498	518688	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	intron	518689	518776	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	CDS	518777	518887	1	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	exon	518777	518887	.	+	.	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
Ledus.C7	AUGUSTUS	stop_codon	518888	518890	.	+	0	transcript_id "Ledus.C7G003900.t1"; gene_id "Ledus.C7G003900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4655.t1 is derived from g2093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18723434	18725177	.	-	.	Ledus.S1G207600
Ledus.S1	AUGUSTUS	transcript	18723434	18725177	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	stop_codon	18723431	18723433	.	-	0	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	CDS	18723434	18723541	0.92	-	0	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	exon	18723434	18723541	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	intron	18723542	18723618	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	CDS	18723619	18723768	1	-	0	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	exon	18723619	18723768	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	intron	18723769	18723858	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	CDS	18723859	18723964	1	-	1	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	exon	18723859	18723964	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	intron	18723965	18724056	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	CDS	18724057	18724253	0.95	-	0	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	exon	18724057	18724253	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	intron	18724254	18724332	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	CDS	18724333	18724425	0.88	-	0	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	exon	18724333	18724425	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	intron	18724426	18724494	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	CDS	18724495	18724588	0.85	-	1	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	exon	18724495	18724588	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	intron	18724589	18724680	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	CDS	18724681	18724832	1	-	0	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	exon	18724681	18724832	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	intron	18724833	18724919	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	CDS	18724920	18725177	0.89	-	0	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	exon	18724920	18725177	.	-	.	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
Ledus.S1	AUGUSTUS	start_codon	18725175	18725177	.	-	0	transcript_id "Ledus.S1G207600.t1"; gene_id "Ledus.S1G207600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg770.t1 is derived from g7631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4898456	4900100	.	-	.	Ledus.S2G065200
Ledus.S2	AUGUSTUS	transcript	4898456	4900100	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	stop_codon	4898453	4898455	.	-	0	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	CDS	4898456	4898531	1	-	1	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	exon	4898456	4898531	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	intron	4898532	4898627	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	CDS	4898628	4898721	1	-	2	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	exon	4898628	4898721	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	intron	4898722	4898798	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	CDS	4898799	4898884	1	-	1	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	exon	4898799	4898884	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	intron	4898885	4898985	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	CDS	4898986	4899151	1	-	2	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	exon	4898986	4899151	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	intron	4899152	4899289	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	CDS	4899290	4899382	1	-	2	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	exon	4899290	4899382	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	intron	4899383	4899486	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	CDS	4899487	4899550	1	-	0	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	exon	4899487	4899550	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	intron	4899551	4899683	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	CDS	4899684	4899720	1	-	1	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	exon	4899684	4899720	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	intron	4899721	4899872	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	CDS	4899873	4899972	1	-	2	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	exon	4899873	4899972	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	intron	4899973	4900072	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	CDS	4900073	4900100	0.95	-	0	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	exon	4900073	4900100	.	-	.	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
Ledus.S2	AUGUSTUS	start_codon	4900098	4900100	.	-	0	transcript_id "Ledus.S2G065200.t1"; gene_id "Ledus.S2G065200"
# This transcript jg1786.t2 is derived from g8649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1786.t3 is derived from g8649.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1787.t1 is derived from g8650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12601167	12601532	.	+	.	Ledus.S2G166900
Ledus.S2	AUGUSTUS	transcript	12601167	12601532	.	+	.	transcript_id "Ledus.S2G166900.t1"; gene_id "Ledus.S2G166900"
Ledus.S2	AUGUSTUS	start_codon	12601167	12601169	.	+	0	transcript_id "Ledus.S2G166900.t1"; gene_id "Ledus.S2G166900"
Ledus.S2	AUGUSTUS	CDS	12601167	12601532	0.88	+	0	transcript_id "Ledus.S2G166900.t1"; gene_id "Ledus.S2G166900"
Ledus.S2	AUGUSTUS	exon	12601167	12601532	.	+	.	transcript_id "Ledus.S2G166900.t1"; gene_id "Ledus.S2G166900"
Ledus.S2	AUGUSTUS	stop_codon	12601533	12601535	.	+	0	transcript_id "Ledus.S2G166900.t1"; gene_id "Ledus.S2G166900"
# This transcript jg10050.t2 is derived from g11080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10050.t3 is derived from g11080.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10051.t1 is derived from g11081.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12186723	12187718	.	+	.	Ledus.S3G152800
Ledus.S3	AUGUSTUS	transcript	12186723	12187718	.	+	.	transcript_id "Ledus.S3G152800.t1"; gene_id "Ledus.S3G152800"
Ledus.S3	AUGUSTUS	start_codon	12186723	12186725	.	+	0	transcript_id "Ledus.S3G152800.t1"; gene_id "Ledus.S3G152800"
Ledus.S3	AUGUSTUS	CDS	12186723	12186779	1	+	0	transcript_id "Ledus.S3G152800.t1"; gene_id "Ledus.S3G152800"
Ledus.S3	AUGUSTUS	exon	12186723	12186779	.	+	.	transcript_id "Ledus.S3G152800.t1"; gene_id "Ledus.S3G152800"
Ledus.S3	AUGUSTUS	intron	12186780	12186953	.	+	.	transcript_id "Ledus.S3G152800.t1"; gene_id "Ledus.S3G152800"
Ledus.S3	AUGUSTUS	CDS	12186954	12187718	0.99	+	0	transcript_id "Ledus.S3G152800.t1"; gene_id "Ledus.S3G152800"
Ledus.S3	AUGUSTUS	exon	12186954	12187718	.	+	.	transcript_id "Ledus.S3G152800.t1"; gene_id "Ledus.S3G152800"
Ledus.S3	AUGUSTUS	stop_codon	12187719	12187721	.	+	0	transcript_id "Ledus.S3G152800.t1"; gene_id "Ledus.S3G152800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12608.t1 is derived from g6230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13216638	13217812	.	+	.	Ledus.S4G176400
Ledus.S4	AUGUSTUS	transcript	13216638	13217812	.	+	.	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	start_codon	13216638	13216640	.	+	0	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	CDS	13216638	13216865	0.73	+	0	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	exon	13216638	13216865	.	+	.	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	intron	13216866	13216964	.	+	.	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	CDS	13216965	13217083	0.68	+	0	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	exon	13216965	13217083	.	+	.	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	intron	13217084	13217194	.	+	.	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	CDS	13217195	13217306	0.7	+	1	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	exon	13217195	13217306	.	+	.	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	intron	13217307	13217376	.	+	.	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	CDS	13217377	13217529	1	+	0	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	exon	13217377	13217529	.	+	.	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	intron	13217530	13217610	.	+	.	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	CDS	13217611	13217661	1	+	0	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	exon	13217611	13217661	.	+	.	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	intron	13217662	13217737	.	+	.	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	CDS	13217738	13217812	1	+	0	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	exon	13217738	13217812	.	+	.	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
Ledus.S4	AUGUSTUS	stop_codon	13217813	13217815	.	+	0	transcript_id "Ledus.S4G176400.t1"; gene_id "Ledus.S4G176400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2927.t1 is derived from g362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4611214	4612961	.	-	.	Ledus.S1G034800
Ledus.S1	AUGUSTUS	transcript	4611214	4612961	.	-	.	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	stop_codon	4611211	4611213	.	-	0	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	CDS	4611214	4611463	1	-	1	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	exon	4611214	4611463	.	-	.	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	intron	4611464	4611542	.	-	.	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	CDS	4611543	4611782	1	-	1	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	exon	4611543	4611782	.	-	.	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	intron	4611783	4611873	.	-	.	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	CDS	4611874	4612116	1	-	1	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	exon	4611874	4612116	.	-	.	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	intron	4612117	4612210	.	-	.	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	CDS	4612211	4612579	1	-	1	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	exon	4612211	4612579	.	-	.	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	intron	4612580	4612665	.	-	.	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	CDS	4612666	4612961	1	-	0	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	exon	4612666	4612961	.	-	.	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
Ledus.S1	AUGUSTUS	start_codon	4612959	4612961	.	-	0	transcript_id "Ledus.S1G034800.t1"; gene_id "Ledus.S1G034800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10227.t1 is derived from g11257.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13663055	13665819	.	+	.	Ledus.S3G170400
Ledus.S3	AUGUSTUS	transcript	13663055	13665819	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	start_codon	13663055	13663057	.	+	0	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13663055	13663400	0.25	+	0	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13663055	13663400	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13663401	13663479	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13663480	13663727	0.93	+	2	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13663480	13663727	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13663728	13663837	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13663838	13663942	1	+	0	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13663838	13663942	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13663943	13664034	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13664035	13664205	1	+	0	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13664035	13664205	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13664206	13664335	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13664336	13664401	1	+	0	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13664336	13664401	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13664402	13664671	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13664672	13664737	1	+	0	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13664672	13664737	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13664738	13664818	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13664819	13664890	1	+	0	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13664819	13664890	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13664891	13664989	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13664990	13665316	0.51	+	0	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13664990	13665316	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13665317	13665451	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13665452	13665480	0.61	+	0	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13665452	13665480	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13665481	13665627	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13665628	13665679	1	+	1	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13665628	13665679	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13665680	13665807	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13665808	13665819	1	+	0	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13665808	13665819	.	+	.	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	stop_codon	13665820	13665822	.	+	0	transcript_id "Ledus.S3G170400.t1"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	transcript	13663055	13665819	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	start_codon	13663055	13663057	.	+	0	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13663055	13663400	0.19	+	0	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13663055	13663400	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13663401	13663479	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13663480	13663727	0.94	+	2	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13663480	13663727	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13663728	13663837	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13663838	13663942	1	+	0	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13663838	13663942	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13663943	13664034	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13664035	13664205	1	+	0	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13664035	13664205	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13664206	13664335	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13664336	13664401	1	+	0	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13664336	13664401	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13664402	13664671	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13664672	13664737	1	+	0	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13664672	13664737	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13664738	13664818	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13664819	13664887	0.64	+	0	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13664819	13664887	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13664888	13664989	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13664990	13665316	0.57	+	0	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13664990	13665316	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13665317	13665451	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13665452	13665480	0.65	+	0	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13665452	13665480	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13665481	13665627	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13665628	13665679	1	+	1	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13665628	13665679	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	intron	13665680	13665807	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	CDS	13665808	13665819	1	+	0	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	exon	13665808	13665819	.	+	.	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
Ledus.S3	AUGUSTUS	stop_codon	13665820	13665822	.	+	0	transcript_id "Ledus.S3G170400.t2"; gene_id "Ledus.S3G170400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg107.t1 is derived from g9520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	433216	435900	.	-	.	Ledus.C8G006700
Ledus.C8	AUGUSTUS	transcript	433216	435900	.	-	.	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	stop_codon	433213	433215	.	-	0	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	CDS	433216	435319	0.83	-	1	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	exon	433216	435319	.	-	.	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	intron	435320	435408	.	-	.	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	CDS	435409	435485	0.8	-	0	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	exon	435409	435485	.	-	.	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	intron	435486	435591	.	-	.	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	CDS	435592	435665	1	-	2	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	exon	435592	435665	.	-	.	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	intron	435666	435758	.	-	.	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	CDS	435759	435900	0.87	-	0	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	exon	435759	435900	.	-	.	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	start_codon	435898	435900	.	-	0	transcript_id "Ledus.C8G006700.t1"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	transcript	433216	435900	.	-	.	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	stop_codon	433213	433215	.	-	0	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	CDS	433216	435322	0.81	-	1	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	exon	433216	435322	.	-	.	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	intron	435323	435408	.	-	.	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	CDS	435409	435485	0.8	-	0	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	exon	435409	435485	.	-	.	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	intron	435486	435591	.	-	.	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	CDS	435592	435665	1	-	2	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	exon	435592	435665	.	-	.	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	intron	435666	435758	.	-	.	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	CDS	435759	435900	0.89	-	0	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	exon	435759	435900	.	-	.	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
Ledus.C8	AUGUSTUS	start_codon	435898	435900	.	-	0	transcript_id "Ledus.C8G006700.t2"; gene_id "Ledus.C8G006700"
# This transcript jg3759.t1 is derived from g1195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11692985	11693272	.	+	.	Ledus.S1G118000
Ledus.S1	AUGUSTUS	transcript	11692985	11693272	.	+	.	transcript_id "Ledus.S1G118000.t1"; gene_id "Ledus.S1G118000"
Ledus.S1	AUGUSTUS	start_codon	11692985	11692987	.	+	0	transcript_id "Ledus.S1G118000.t1"; gene_id "Ledus.S1G118000"
Ledus.S1	AUGUSTUS	CDS	11692985	11693272	0.37	+	0	transcript_id "Ledus.S1G118000.t1"; gene_id "Ledus.S1G118000"
Ledus.S1	AUGUSTUS	exon	11692985	11693272	.	+	.	transcript_id "Ledus.S1G118000.t1"; gene_id "Ledus.S1G118000"
Ledus.S1	AUGUSTUS	stop_codon	11693273	11693275	.	+	0	transcript_id "Ledus.S1G118000.t1"; gene_id "Ledus.S1G118000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10627.t1 is derived from g11657.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16579395	16581944	.	-	.	Ledus.S3G210400
Ledus.S3	AUGUSTUS	transcript	16579395	16581944	.	-	.	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	stop_codon	16579392	16579394	.	-	0	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	CDS	16579395	16579739	1	-	0	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	exon	16579395	16579739	.	-	.	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	intron	16579740	16579848	.	-	.	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	CDS	16579849	16580253	1	-	0	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	exon	16579849	16580253	.	-	.	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	intron	16580254	16580337	.	-	.	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	CDS	16580338	16580511	1	-	0	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	exon	16580338	16580511	.	-	.	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	intron	16580512	16580611	.	-	.	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	CDS	16580612	16581360	0.93	-	2	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	exon	16580612	16581360	.	-	.	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	intron	16581361	16581669	.	-	.	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	CDS	16581670	16581732	1	-	2	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	exon	16581670	16581732	.	-	.	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	intron	16581733	16581913	.	-	.	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	CDS	16581914	16581944	1	-	0	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	exon	16581914	16581944	.	-	.	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
Ledus.S3	AUGUSTUS	start_codon	16581942	16581944	.	-	0	transcript_id "Ledus.S3G210400.t1"; gene_id "Ledus.S3G210400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6959.t1 is derived from g6490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	355947	356252	.	+	.	Ledus.C7G002000
Ledus.C7	AUGUSTUS	transcript	355947	356252	.	+	.	transcript_id "Ledus.C7G002000.t1"; gene_id "Ledus.C7G002000"
Ledus.C7	AUGUSTUS	start_codon	355947	355949	.	+	0	transcript_id "Ledus.C7G002000.t1"; gene_id "Ledus.C7G002000"
Ledus.C7	AUGUSTUS	CDS	355947	356252	0.84	+	0	transcript_id "Ledus.C7G002000.t1"; gene_id "Ledus.C7G002000"
Ledus.C7	AUGUSTUS	exon	355947	356252	.	+	.	transcript_id "Ledus.C7G002000.t1"; gene_id "Ledus.C7G002000"
Ledus.C7	AUGUSTUS	stop_codon	356253	356255	.	+	0	transcript_id "Ledus.C7G002000.t1"; gene_id "Ledus.C7G002000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11595.t1 is derived from g5213.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5433189	5436118	.	-	.	Ledus.S4G075100
Ledus.S4	AUGUSTUS	transcript	5433189	5436118	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	stop_codon	5433186	5433188	.	-	0	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	CDS	5433189	5433368	1	-	0	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	exon	5433189	5433368	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	intron	5433369	5433458	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	CDS	5433459	5433588	1	-	1	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	exon	5433459	5433588	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	intron	5433589	5433692	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	CDS	5433693	5433880	1	-	0	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	exon	5433693	5433880	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	intron	5433881	5433960	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	CDS	5433961	5434046	1	-	2	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	exon	5433961	5434046	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	intron	5434047	5434133	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	CDS	5434134	5434350	1	-	0	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	exon	5434134	5434350	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	intron	5434351	5434477	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	CDS	5434478	5434549	0.67	-	0	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	exon	5434478	5434549	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	intron	5434550	5434666	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	CDS	5434667	5434936	0.99	-	0	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	exon	5434667	5434936	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	intron	5434937	5435045	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	CDS	5435046	5435153	0.99	-	0	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	exon	5435046	5435153	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	intron	5435154	5435268	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	CDS	5435269	5435355	1	-	0	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	exon	5435269	5435355	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	intron	5435356	5435452	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	CDS	5435453	5436118	0.69	-	0	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	exon	5435453	5436118	.	-	.	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
Ledus.S4	AUGUSTUS	start_codon	5436116	5436118	.	-	0	transcript_id "Ledus.S4G075100.t1"; gene_id "Ledus.S4G075100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg167.t1 is derived from g7028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	499114	499693	.	+	.	Ledus.S2G004900
Ledus.S2	AUGUSTUS	transcript	499114	499693	.	+	.	transcript_id "Ledus.S2G004900.t1"; gene_id "Ledus.S2G004900"
Ledus.S2	AUGUSTUS	start_codon	499114	499116	.	+	0	transcript_id "Ledus.S2G004900.t1"; gene_id "Ledus.S2G004900"
Ledus.S2	AUGUSTUS	CDS	499114	499410	0.99	+	0	transcript_id "Ledus.S2G004900.t1"; gene_id "Ledus.S2G004900"
Ledus.S2	AUGUSTUS	exon	499114	499410	.	+	.	transcript_id "Ledus.S2G004900.t1"; gene_id "Ledus.S2G004900"
Ledus.S2	AUGUSTUS	intron	499411	499508	.	+	.	transcript_id "Ledus.S2G004900.t1"; gene_id "Ledus.S2G004900"
Ledus.S2	AUGUSTUS	CDS	499509	499589	1	+	0	transcript_id "Ledus.S2G004900.t1"; gene_id "Ledus.S2G004900"
Ledus.S2	AUGUSTUS	exon	499509	499589	.	+	.	transcript_id "Ledus.S2G004900.t1"; gene_id "Ledus.S2G004900"
Ledus.S2	AUGUSTUS	intron	499590	499687	.	+	.	transcript_id "Ledus.S2G004900.t1"; gene_id "Ledus.S2G004900"
Ledus.S2	AUGUSTUS	CDS	499688	499693	1	+	0	transcript_id "Ledus.S2G004900.t1"; gene_id "Ledus.S2G004900"
Ledus.S2	AUGUSTUS	exon	499688	499693	.	+	.	transcript_id "Ledus.S2G004900.t1"; gene_id "Ledus.S2G004900"
Ledus.S2	AUGUSTUS	stop_codon	499694	499696	.	+	0	transcript_id "Ledus.S2G004900.t1"; gene_id "Ledus.S2G004900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8147.t1 is derived from g12818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9372610	9373889	.	-	.	Ledus.S5G092500
Ledus.S5	AUGUSTUS	transcript	9372610	9373889	.	-	.	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	stop_codon	9372607	9372609	.	-	0	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	CDS	9372610	9373010	0.95	-	2	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	exon	9372610	9373010	.	-	.	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	intron	9373011	9373094	.	-	.	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	CDS	9373095	9373260	1	-	0	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	exon	9373095	9373260	.	-	.	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	intron	9373261	9373350	.	-	.	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	CDS	9373351	9373542	1	-	0	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	exon	9373351	9373542	.	-	.	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	intron	9373543	9373655	.	-	.	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	CDS	9373656	9373889	0.55	-	0	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	exon	9373656	9373889	.	-	.	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
Ledus.S5	AUGUSTUS	start_codon	9373887	9373889	.	-	0	transcript_id "Ledus.S5G092500.t1"; gene_id "Ledus.S5G092500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5195.t1 is derived from g2634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22416066	22421100	.	-	.	Ledus.S1G261600
Ledus.S1	AUGUSTUS	transcript	22416066	22421100	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	stop_codon	22416063	22416065	.	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22416066	22416188	0.64	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22416066	22416188	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22416189	22416285	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22416286	22416405	1	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22416286	22416405	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22416406	22416487	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22416488	22416558	1	-	2	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22416488	22416558	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22416559	22416639	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22416640	22416835	1	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22416640	22416835	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22416836	22417061	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22417062	22417277	1	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22417062	22417277	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22417278	22417431	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22417432	22417542	1	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22417432	22417542	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22417543	22417664	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22417665	22417848	1	-	1	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22417665	22417848	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22417849	22417935	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22417936	22418088	1	-	1	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22417936	22418088	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22418089	22418209	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22418210	22418400	1	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22418210	22418400	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22418401	22418501	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22418502	22418636	1	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22418502	22418636	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22418637	22418727	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22418728	22418859	1	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22418728	22418859	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22418860	22418990	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22418991	22419949	0.74	-	2	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22418991	22419949	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22419950	22420035	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22420036	22420123	1	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22420036	22420123	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22420124	22420262	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22420263	22420379	1	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22420263	22420379	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22420380	22420480	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22420481	22420582	1	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22420481	22420582	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22420583	22420785	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22420786	22421100	0.47	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22420786	22421100	.	-	.	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	start_codon	22421098	22421100	.	-	0	transcript_id "Ledus.S1G261600.t1"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	transcript	22416066	22421100	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	stop_codon	22416063	22416065	.	-	0	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22416066	22416188	0.62	-	0	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22416066	22416188	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22416189	22416285	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22416286	22416405	1	-	0	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22416286	22416405	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22416406	22416487	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22416488	22416558	1	-	2	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22416488	22416558	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22416559	22416639	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22416640	22416835	1	-	0	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22416640	22416835	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22416836	22417061	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22417062	22417277	1	-	0	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22417062	22417277	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22417278	22417431	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22417432	22417542	1	-	0	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22417432	22417542	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22417543	22417664	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22417665	22417848	0.99	-	1	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22417665	22417848	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22417849	22417935	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22417936	22418088	1	-	1	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22417936	22418088	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22418089	22418209	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22418210	22418400	0.98	-	0	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22418210	22418400	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22418401	22418501	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22418502	22418636	1	-	0	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22418502	22418636	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22418637	22418727	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22418728	22418859	1	-	0	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22418728	22418859	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22418860	22418990	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22418991	22419949	0.81	-	2	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22418991	22419949	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22419950	22420035	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22420036	22420123	1	-	0	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22420036	22420123	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22420124	22420262	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22420263	22420296	0.91	-	1	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22420263	22420296	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22420297	22420480	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22420481	22420582	0.91	-	1	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22420481	22420582	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	intron	22420583	22420870	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	CDS	22420871	22421100	0.58	-	0	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	exon	22420871	22421100	.	-	.	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
Ledus.S1	AUGUSTUS	start_codon	22421098	22421100	.	-	0	transcript_id "Ledus.S1G261600.t2"; gene_id "Ledus.S1G261600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11136.t1 is derived from g4754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2117469	2118684	.	-	.	Ledus.S4G029200
Ledus.S4	AUGUSTUS	transcript	2117469	2118684	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	stop_codon	2117466	2117468	.	-	0	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	CDS	2117469	2117508	1	-	1	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	exon	2117469	2117508	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	intron	2117509	2117588	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	CDS	2117589	2117670	1	-	2	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	exon	2117589	2117670	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	intron	2117671	2117750	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	CDS	2117751	2117871	1	-	0	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	exon	2117751	2117871	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	intron	2117872	2117963	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	CDS	2117964	2118029	1	-	0	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	exon	2117964	2118029	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	intron	2118030	2118123	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	CDS	2118124	2118231	1	-	0	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	exon	2118124	2118231	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	intron	2118232	2118305	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	CDS	2118306	2118371	1	-	0	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	exon	2118306	2118371	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	intron	2118372	2118517	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	CDS	2118518	2118546	1	-	2	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	exon	2118518	2118546	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	intron	2118547	2118635	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	CDS	2118636	2118684	1	-	0	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	exon	2118636	2118684	.	-	.	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
Ledus.S4	AUGUSTUS	start_codon	2118682	2118684	.	-	0	transcript_id "Ledus.S4G029200.t1"; gene_id "Ledus.S4G029200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1279.t1 is derived from g8140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9035355	9037622	.	-	.	Ledus.S2G116100
Ledus.S2	AUGUSTUS	transcript	9035355	9037622	.	-	.	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	stop_codon	9035352	9035354	.	-	0	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	CDS	9035355	9036732	0.95	-	1	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	exon	9035355	9036732	.	-	.	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	intron	9036733	9036904	.	-	.	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	CDS	9036905	9036990	0.87	-	0	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	exon	9036905	9036990	.	-	.	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	intron	9036991	9037160	.	-	.	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	CDS	9037161	9037304	1	-	0	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	exon	9037161	9037304	.	-	.	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	intron	9037305	9037511	.	-	.	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	CDS	9037512	9037622	0.84	-	0	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	exon	9037512	9037622	.	-	.	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
Ledus.S2	AUGUSTUS	start_codon	9037620	9037622	.	-	0	transcript_id "Ledus.S2G116100.t1"; gene_id "Ledus.S2G116100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12873.t1 is derived from g4446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	152352	152621	.	-	.	Ledus.C10G001600
Ledus.C10	AUGUSTUS	transcript	152352	152621	.	-	.	transcript_id "Ledus.C10G001600.t1"; gene_id "Ledus.C10G001600"
Ledus.C10	AUGUSTUS	stop_codon	152349	152351	.	-	0	transcript_id "Ledus.C10G001600.t1"; gene_id "Ledus.C10G001600"
Ledus.C10	AUGUSTUS	CDS	152352	152621	1	-	0	transcript_id "Ledus.C10G001600.t1"; gene_id "Ledus.C10G001600"
Ledus.C10	AUGUSTUS	exon	152352	152621	.	-	.	transcript_id "Ledus.C10G001600.t1"; gene_id "Ledus.C10G001600"
Ledus.C10	AUGUSTUS	start_codon	152619	152621	.	-	0	transcript_id "Ledus.C10G001600.t1"; gene_id "Ledus.C10G001600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg260.t1 is derived from g7121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1274751	1278255	.	-	.	Ledus.S2G014200
Ledus.S2	AUGUSTUS	transcript	1274751	1278255	.	-	.	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	stop_codon	1274748	1274750	.	-	0	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	CDS	1274751	1274768	1	-	0	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	exon	1274751	1274768	.	-	.	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	intron	1274769	1274966	.	-	.	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	CDS	1274967	1275018	1	-	1	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	exon	1274967	1275018	.	-	.	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	intron	1275019	1275487	.	-	.	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	CDS	1275488	1277602	0.78	-	1	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	exon	1275488	1277602	.	-	.	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	intron	1277603	1277814	.	-	.	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	CDS	1277815	1277873	1	-	0	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	exon	1277815	1277873	.	-	.	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	intron	1277874	1277975	.	-	.	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	CDS	1277976	1278040	0.98	-	2	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	exon	1277976	1278040	.	-	.	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	intron	1278041	1278125	.	-	.	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	CDS	1278126	1278255	0.94	-	0	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	exon	1278126	1278255	.	-	.	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
Ledus.S2	AUGUSTUS	start_codon	1278253	1278255	.	-	0	transcript_id "Ledus.S2G014200.t1"; gene_id "Ledus.S2G014200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7716.t1 is derived from g12387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5419935	5420588	.	-	.	Ledus.S5G049400
Ledus.S5	AUGUSTUS	transcript	5419935	5420588	.	-	.	transcript_id "Ledus.S5G049400.t1"; gene_id "Ledus.S5G049400"
Ledus.S5	AUGUSTUS	stop_codon	5419932	5419934	.	-	0	transcript_id "Ledus.S5G049400.t1"; gene_id "Ledus.S5G049400"
Ledus.S5	AUGUSTUS	CDS	5419935	5420588	0.99	-	0	transcript_id "Ledus.S5G049400.t1"; gene_id "Ledus.S5G049400"
Ledus.S5	AUGUSTUS	exon	5419935	5420588	.	-	.	transcript_id "Ledus.S5G049400.t1"; gene_id "Ledus.S5G049400"
Ledus.S5	AUGUSTUS	start_codon	5420586	5420588	.	-	0	transcript_id "Ledus.S5G049400.t1"; gene_id "Ledus.S5G049400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10912.t1 is derived from g4530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	428304	429245	.	+	.	Ledus.S4G006800
Ledus.S4	AUGUSTUS	transcript	428304	429245	.	+	.	transcript_id "Ledus.S4G006800.t1"; gene_id "Ledus.S4G006800"
Ledus.S4	AUGUSTUS	start_codon	428304	428306	.	+	0	transcript_id "Ledus.S4G006800.t1"; gene_id "Ledus.S4G006800"
Ledus.S4	AUGUSTUS	CDS	428304	428622	0.31	+	0	transcript_id "Ledus.S4G006800.t1"; gene_id "Ledus.S4G006800"
Ledus.S4	AUGUSTUS	exon	428304	428622	.	+	.	transcript_id "Ledus.S4G006800.t1"; gene_id "Ledus.S4G006800"
Ledus.S4	AUGUSTUS	intron	428623	428778	.	+	.	transcript_id "Ledus.S4G006800.t1"; gene_id "Ledus.S4G006800"
Ledus.S4	AUGUSTUS	CDS	428779	429074	1	+	2	transcript_id "Ledus.S4G006800.t1"; gene_id "Ledus.S4G006800"
Ledus.S4	AUGUSTUS	exon	428779	429074	.	+	.	transcript_id "Ledus.S4G006800.t1"; gene_id "Ledus.S4G006800"
Ledus.S4	AUGUSTUS	intron	429075	429152	.	+	.	transcript_id "Ledus.S4G006800.t1"; gene_id "Ledus.S4G006800"
Ledus.S4	AUGUSTUS	CDS	429153	429245	0.99	+	0	transcript_id "Ledus.S4G006800.t1"; gene_id "Ledus.S4G006800"
Ledus.S4	AUGUSTUS	exon	429153	429245	.	+	.	transcript_id "Ledus.S4G006800.t1"; gene_id "Ledus.S4G006800"
Ledus.S4	AUGUSTUS	stop_codon	429246	429248	.	+	0	transcript_id "Ledus.S4G006800.t1"; gene_id "Ledus.S4G006800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10860.t1 is derived from g4478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	151030	152679	.	-	.	Ledus.S4G001600
Ledus.S4	AUGUSTUS	transcript	151030	152679	.	-	.	transcript_id "Ledus.S4G001600.t1"; gene_id "Ledus.S4G001600"
Ledus.S4	AUGUSTUS	stop_codon	151027	151029	.	-	0	transcript_id "Ledus.S4G001600.t1"; gene_id "Ledus.S4G001600"
Ledus.S4	AUGUSTUS	CDS	151030	152679	0.62	-	0	transcript_id "Ledus.S4G001600.t1"; gene_id "Ledus.S4G001600"
Ledus.S4	AUGUSTUS	exon	151030	152679	.	-	.	transcript_id "Ledus.S4G001600.t1"; gene_id "Ledus.S4G001600"
Ledus.S4	AUGUSTUS	start_codon	152677	152679	.	-	0	transcript_id "Ledus.S4G001600.t1"; gene_id "Ledus.S4G001600"
# This transcript jg9321.t2 is derived from g10351.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9322.t1 is derived from g10352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6093560	6093985	.	-	.	Ledus.S3G079900
Ledus.S3	AUGUSTUS	transcript	6093560	6093985	.	-	.	transcript_id "Ledus.S3G079900.t1"; gene_id "Ledus.S3G079900"
Ledus.S3	AUGUSTUS	stop_codon	6093557	6093559	.	-	0	transcript_id "Ledus.S3G079900.t1"; gene_id "Ledus.S3G079900"
Ledus.S3	AUGUSTUS	CDS	6093560	6093985	0.96	-	0	transcript_id "Ledus.S3G079900.t1"; gene_id "Ledus.S3G079900"
Ledus.S3	AUGUSTUS	exon	6093560	6093985	.	-	.	transcript_id "Ledus.S3G079900.t1"; gene_id "Ledus.S3G079900"
Ledus.S3	AUGUSTUS	start_codon	6093983	6093985	.	-	0	transcript_id "Ledus.S3G079900.t1"; gene_id "Ledus.S3G079900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11093.t1 is derived from g4711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1724952	1726641	.	+	.	Ledus.S4G024900
Ledus.S4	AUGUSTUS	transcript	1724952	1726641	.	+	.	transcript_id "Ledus.S4G024900.t1"; gene_id "Ledus.S4G024900"
Ledus.S4	AUGUSTUS	start_codon	1724952	1724954	.	+	0	transcript_id "Ledus.S4G024900.t1"; gene_id "Ledus.S4G024900"
Ledus.S4	AUGUSTUS	CDS	1724952	1725392	0.31	+	0	transcript_id "Ledus.S4G024900.t1"; gene_id "Ledus.S4G024900"
Ledus.S4	AUGUSTUS	exon	1724952	1725392	.	+	.	transcript_id "Ledus.S4G024900.t1"; gene_id "Ledus.S4G024900"
Ledus.S4	AUGUSTUS	intron	1725393	1725645	.	+	.	transcript_id "Ledus.S4G024900.t1"; gene_id "Ledus.S4G024900"
Ledus.S4	AUGUSTUS	CDS	1725646	1726641	0.84	+	0	transcript_id "Ledus.S4G024900.t1"; gene_id "Ledus.S4G024900"
Ledus.S4	AUGUSTUS	exon	1725646	1726641	.	+	.	transcript_id "Ledus.S4G024900.t1"; gene_id "Ledus.S4G024900"
Ledus.S4	AUGUSTUS	stop_codon	1726642	1726644	.	+	0	transcript_id "Ledus.S4G024900.t1"; gene_id "Ledus.S4G024900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6149.t1 is derived from g3592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29288022	29288621	.	+	.	Ledus.S1G357000
Ledus.S1	AUGUSTUS	transcript	29288022	29288621	.	+	.	transcript_id "Ledus.S1G357000.t1"; gene_id "Ledus.S1G357000"
Ledus.S1	AUGUSTUS	start_codon	29288022	29288024	.	+	0	transcript_id "Ledus.S1G357000.t1"; gene_id "Ledus.S1G357000"
Ledus.S1	AUGUSTUS	CDS	29288022	29288621	0.86	+	0	transcript_id "Ledus.S1G357000.t1"; gene_id "Ledus.S1G357000"
Ledus.S1	AUGUSTUS	exon	29288022	29288621	.	+	.	transcript_id "Ledus.S1G357000.t1"; gene_id "Ledus.S1G357000"
Ledus.S1	AUGUSTUS	stop_codon	29288622	29288624	.	+	0	transcript_id "Ledus.S1G357000.t1"; gene_id "Ledus.S1G357000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12398.t1 is derived from g6019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11655724	11657795	.	-	.	Ledus.S4G155400
Ledus.S4	AUGUSTUS	transcript	11655724	11657795	.	-	.	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	stop_codon	11655721	11655723	.	-	0	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	CDS	11655724	11656113	0.98	-	0	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	exon	11655724	11656113	.	-	.	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	intron	11656114	11656195	.	-	.	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	CDS	11656196	11656324	1	-	0	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	exon	11656196	11656324	.	-	.	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	intron	11656325	11656399	.	-	.	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	CDS	11656400	11656714	1	-	0	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	exon	11656400	11656714	.	-	.	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	intron	11656715	11656799	.	-	.	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	CDS	11656800	11656922	1	-	0	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	exon	11656800	11656922	.	-	.	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	intron	11656923	11657357	.	-	.	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	CDS	11657358	11657795	1	-	0	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	exon	11657358	11657795	.	-	.	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
Ledus.S4	AUGUSTUS	start_codon	11657793	11657795	.	-	0	transcript_id "Ledus.S4G155400.t1"; gene_id "Ledus.S4G155400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8129.t1 is derived from g12800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9282087	9284174	.	-	.	Ledus.S5G090700
Ledus.S5	AUGUSTUS	transcript	9282087	9284174	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	stop_codon	9282084	9282086	.	-	0	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	CDS	9282087	9282128	1	-	0	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	exon	9282087	9282128	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	intron	9282129	9282226	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	CDS	9282227	9282337	1	-	0	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	exon	9282227	9282337	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	intron	9282338	9282446	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	CDS	9282447	9282530	1	-	0	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	exon	9282447	9282530	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	intron	9282531	9282612	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	CDS	9282613	9282713	1	-	2	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	exon	9282613	9282713	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	intron	9282714	9282832	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	CDS	9282833	9283386	0.99	-	1	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	exon	9282833	9283386	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	intron	9283387	9283523	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	CDS	9283524	9283647	0.77	-	2	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	exon	9283524	9283647	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	intron	9283648	9283993	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	CDS	9283994	9284174	0.7	-	0	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	exon	9283994	9284174	.	-	.	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
Ledus.S5	AUGUSTUS	start_codon	9284172	9284174	.	-	0	transcript_id "Ledus.S5G090700.t1"; gene_id "Ledus.S5G090700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2641.t1 is derived from g74.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1085484	1085786	.	+	.	Ledus.S1G006200
Ledus.S1	AUGUSTUS	transcript	1085484	1085786	.	+	.	transcript_id "Ledus.S1G006200.t1"; gene_id "Ledus.S1G006200"
Ledus.S1	AUGUSTUS	start_codon	1085484	1085486	.	+	0	transcript_id "Ledus.S1G006200.t1"; gene_id "Ledus.S1G006200"
Ledus.S1	AUGUSTUS	CDS	1085484	1085786	0.79	+	0	transcript_id "Ledus.S1G006200.t1"; gene_id "Ledus.S1G006200"
Ledus.S1	AUGUSTUS	exon	1085484	1085786	.	+	.	transcript_id "Ledus.S1G006200.t1"; gene_id "Ledus.S1G006200"
Ledus.S1	AUGUSTUS	stop_codon	1085787	1085789	.	+	0	transcript_id "Ledus.S1G006200.t1"; gene_id "Ledus.S1G006200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11085.t1 is derived from g4703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1681795	1683066	.	+	.	Ledus.S4G024100
Ledus.S4	AUGUSTUS	transcript	1681795	1683066	.	+	.	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	start_codon	1681795	1681797	.	+	0	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	CDS	1681795	1681895	0.7	+	0	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	exon	1681795	1681895	.	+	.	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	intron	1681896	1681993	.	+	.	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	CDS	1681994	1682069	0.75	+	1	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	exon	1681994	1682069	.	+	.	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	intron	1682070	1682153	.	+	.	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	CDS	1682154	1682389	1	+	0	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	exon	1682154	1682389	.	+	.	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	intron	1682390	1682572	.	+	.	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	CDS	1682573	1682669	1	+	1	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	exon	1682573	1682669	.	+	.	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	intron	1682670	1682796	.	+	.	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	CDS	1682797	1683066	0.97	+	0	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	exon	1682797	1683066	.	+	.	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
Ledus.S4	AUGUSTUS	stop_codon	1683067	1683069	.	+	0	transcript_id "Ledus.S4G024100.t1"; gene_id "Ledus.S4G024100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3572.t1 is derived from g1008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9717718	9718140	.	-	.	Ledus.S1G099300
Ledus.S1	AUGUSTUS	transcript	9717718	9718140	.	-	.	transcript_id "Ledus.S1G099300.t1"; gene_id "Ledus.S1G099300"
Ledus.S1	AUGUSTUS	stop_codon	9717715	9717717	.	-	0	transcript_id "Ledus.S1G099300.t1"; gene_id "Ledus.S1G099300"
Ledus.S1	AUGUSTUS	CDS	9717718	9717880	0.33	-	1	transcript_id "Ledus.S1G099300.t1"; gene_id "Ledus.S1G099300"
Ledus.S1	AUGUSTUS	exon	9717718	9717880	.	-	.	transcript_id "Ledus.S1G099300.t1"; gene_id "Ledus.S1G099300"
Ledus.S1	AUGUSTUS	intron	9717881	9717997	.	-	.	transcript_id "Ledus.S1G099300.t1"; gene_id "Ledus.S1G099300"
Ledus.S1	AUGUSTUS	CDS	9717998	9718140	0.28	-	0	transcript_id "Ledus.S1G099300.t1"; gene_id "Ledus.S1G099300"
Ledus.S1	AUGUSTUS	exon	9717998	9718140	.	-	.	transcript_id "Ledus.S1G099300.t1"; gene_id "Ledus.S1G099300"
Ledus.S1	AUGUSTUS	start_codon	9718138	9718140	.	-	0	transcript_id "Ledus.S1G099300.t1"; gene_id "Ledus.S1G099300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10471.t1 is derived from g11501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15463485	15466160	.	+	.	Ledus.S3G194800
Ledus.S3	AUGUSTUS	transcript	15463485	15466160	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	start_codon	15463485	15463487	.	+	0	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	CDS	15463485	15463669	1	+	0	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	exon	15463485	15463669	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	intron	15463670	15464001	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	CDS	15464002	15464117	1	+	1	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	exon	15464002	15464117	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	intron	15464118	15464247	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	CDS	15464248	15464512	1	+	2	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	exon	15464248	15464512	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	intron	15464513	15464617	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	CDS	15464618	15464675	1	+	1	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	exon	15464618	15464675	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	intron	15464676	15464864	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	CDS	15464865	15464954	1	+	0	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	exon	15464865	15464954	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	intron	15464955	15465054	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	CDS	15465055	15465117	1	+	0	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	exon	15465055	15465117	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	intron	15465118	15465205	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	CDS	15465206	15465295	1	+	0	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	exon	15465206	15465295	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	intron	15465296	15465425	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	CDS	15465426	15465584	1	+	0	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	exon	15465426	15465584	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	intron	15465585	15465714	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	CDS	15465715	15465836	1	+	0	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	exon	15465715	15465836	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	intron	15465837	15465931	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	CDS	15465932	15466004	1	+	1	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	exon	15465932	15466004	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	intron	15466005	15466091	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	CDS	15466092	15466160	1	+	0	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	exon	15466092	15466160	.	+	.	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
Ledus.S3	AUGUSTUS	stop_codon	15466161	15466163	.	+	0	transcript_id "Ledus.S3G194800.t1"; gene_id "Ledus.S3G194800"
# This transcript jg7035.t2 is derived from g6566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7036.t1 is derived from g6567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	949883	952249	.	-	.	Ledus.C7G009700
Ledus.C7	AUGUSTUS	transcript	949883	952249	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	stop_codon	949880	949882	.	-	0	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	CDS	949883	950017	1	-	0	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	exon	949883	950017	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	intron	950018	950112	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	CDS	950113	950247	1	-	0	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	exon	950113	950247	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	intron	950248	950329	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	CDS	950330	950428	1	-	0	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	exon	950330	950428	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	intron	950429	950522	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	CDS	950523	950600	1	-	0	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	exon	950523	950600	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	intron	950601	950695	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	CDS	950696	950761	1	-	0	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	exon	950696	950761	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	intron	950762	950857	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	CDS	950858	950926	1	-	0	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	exon	950858	950926	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	intron	950927	951013	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	CDS	951014	951088	0.97	-	0	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	exon	951014	951088	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	intron	951089	951191	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	CDS	951192	951296	0.99	-	0	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	exon	951192	951296	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	intron	951297	951393	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	CDS	951394	951456	0.99	-	0	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	exon	951394	951456	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	intron	951457	951558	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	CDS	951559	951770	0.95	-	2	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	exon	951559	951770	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	intron	951771	951915	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	CDS	951916	952249	0.49	-	0	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	exon	951916	952249	.	-	.	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
Ledus.C7	AUGUSTUS	start_codon	952247	952249	.	-	0	transcript_id "Ledus.C7G009700.t1"; gene_id "Ledus.C7G009700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8655.t1 is derived from g9685.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1162918	1165519	.	+	.	Ledus.S3G013200
Ledus.S3	AUGUSTUS	transcript	1162918	1165519	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	start_codon	1162918	1162920	.	+	0	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1162918	1163072	0.61	+	0	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1162918	1163072	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1163073	1163340	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1163341	1163434	1	+	1	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1163341	1163434	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1163435	1163577	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1163578	1163672	1	+	0	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1163578	1163672	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1163673	1163827	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1163828	1163995	1	+	1	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1163828	1163995	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1163996	1164149	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1164150	1164222	0.79	+	1	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1164150	1164222	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1164223	1164371	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1164372	1164424	0.77	+	0	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1164372	1164424	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1164425	1164539	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1164540	1164631	0.77	+	1	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1164540	1164631	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1164632	1164718	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1164719	1164834	1	+	2	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1164719	1164834	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1164835	1165016	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1165017	1165142	1	+	0	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1165017	1165142	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1165143	1165264	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1165265	1165519	1	+	0	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1165265	1165519	.	+	.	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	stop_codon	1165520	1165522	.	+	0	transcript_id "Ledus.S3G013200.t1"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	transcript	1162918	1165519	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	start_codon	1162918	1162920	.	+	0	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1162918	1163072	0.61	+	0	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1162918	1163072	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1163073	1163340	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1163341	1163434	1	+	1	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1163341	1163434	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1163435	1163577	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1163578	1163672	1	+	0	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1163578	1163672	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1163673	1163827	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1163828	1163995	1	+	1	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1163828	1163995	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1163996	1164149	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1164150	1164222	0.78	+	1	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1164150	1164222	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1164223	1164371	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1164372	1164424	0.79	+	0	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1164372	1164424	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1164425	1164539	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1164540	1164631	0.78	+	1	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1164540	1164631	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1164632	1164781	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1164782	1164834	0.99	+	2	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1164782	1164834	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1164835	1165016	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1165017	1165142	0.99	+	0	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1165017	1165142	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	intron	1165143	1165264	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	CDS	1165265	1165519	0.98	+	0	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	exon	1165265	1165519	.	+	.	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
Ledus.S3	AUGUSTUS	stop_codon	1165520	1165522	.	+	0	transcript_id "Ledus.S3G013200.t2"; gene_id "Ledus.S3G013200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12962.t1 is derived from g6772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1110100	1110661	.	+	.	Ledus.S6G002400
Ledus.S6	AUGUSTUS	transcript	1110100	1110661	.	+	.	transcript_id "Ledus.S6G002400.t1"; gene_id "Ledus.S6G002400"
Ledus.S6	AUGUSTUS	start_codon	1110100	1110102	.	+	0	transcript_id "Ledus.S6G002400.t1"; gene_id "Ledus.S6G002400"
Ledus.S6	AUGUSTUS	CDS	1110100	1110237	0.79	+	0	transcript_id "Ledus.S6G002400.t1"; gene_id "Ledus.S6G002400"
Ledus.S6	AUGUSTUS	exon	1110100	1110237	.	+	.	transcript_id "Ledus.S6G002400.t1"; gene_id "Ledus.S6G002400"
Ledus.S6	AUGUSTUS	intron	1110238	1110499	.	+	.	transcript_id "Ledus.S6G002400.t1"; gene_id "Ledus.S6G002400"
Ledus.S6	AUGUSTUS	CDS	1110500	1110661	0.84	+	0	transcript_id "Ledus.S6G002400.t1"; gene_id "Ledus.S6G002400"
Ledus.S6	AUGUSTUS	exon	1110500	1110661	.	+	.	transcript_id "Ledus.S6G002400.t1"; gene_id "Ledus.S6G002400"
Ledus.S6	AUGUSTUS	stop_codon	1110662	1110664	.	+	0	transcript_id "Ledus.S6G002400.t1"; gene_id "Ledus.S6G002400"
# This transcript jg5652.t2 is derived from g3091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5653.t1 is derived from g3092.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25587757	25589271	.	-	.	Ledus.S1G307400
Ledus.S1	AUGUSTUS	transcript	25587757	25589271	.	-	.	transcript_id "Ledus.S1G307400.t1"; gene_id "Ledus.S1G307400"
Ledus.S1	AUGUSTUS	stop_codon	25587754	25587756	.	-	0	transcript_id "Ledus.S1G307400.t1"; gene_id "Ledus.S1G307400"
Ledus.S1	AUGUSTUS	CDS	25587757	25589271	0.72	-	0	transcript_id "Ledus.S1G307400.t1"; gene_id "Ledus.S1G307400"
Ledus.S1	AUGUSTUS	exon	25587757	25589271	.	-	.	transcript_id "Ledus.S1G307400.t1"; gene_id "Ledus.S1G307400"
Ledus.S1	AUGUSTUS	start_codon	25589269	25589271	.	-	0	transcript_id "Ledus.S1G307400.t1"; gene_id "Ledus.S1G307400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1919.t1 is derived from g8782.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13397577	13399337	.	+	.	Ledus.S2G180100
Ledus.S2	AUGUSTUS	transcript	13397577	13399337	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	start_codon	13397577	13397579	.	+	0	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	CDS	13397577	13397637	0.99	+	0	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	exon	13397577	13397637	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	intron	13397638	13397863	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	CDS	13397864	13397933	0.96	+	2	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	exon	13397864	13397933	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	intron	13397934	13398012	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	CDS	13398013	13398185	1	+	1	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	exon	13398013	13398185	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	intron	13398186	13398357	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	CDS	13398358	13398454	0.74	+	2	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	exon	13398358	13398454	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	intron	13398455	13398549	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	CDS	13398550	13398719	0.69	+	1	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	exon	13398550	13398719	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	intron	13398720	13399159	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	CDS	13399160	13399172	0.77	+	2	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	exon	13399160	13399172	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	intron	13399173	13399333	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	CDS	13399334	13399337	1	+	1	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	exon	13399334	13399337	.	+	.	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
Ledus.S2	AUGUSTUS	stop_codon	13399338	13399340	.	+	0	transcript_id "Ledus.S2G180100.t1"; gene_id "Ledus.S2G180100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8901.t1 is derived from g9931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2961386	2963721	.	+	.	Ledus.S3G037800
Ledus.S3	AUGUSTUS	transcript	2961386	2963721	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	start_codon	2961386	2961388	.	+	0	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2961386	2961671	0.93	+	0	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2961386	2961671	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	intron	2961672	2961782	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2961783	2961846	1	+	2	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2961783	2961846	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	intron	2961847	2961971	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2961972	2962002	1	+	1	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2961972	2962002	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	intron	2962003	2962107	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2962108	2962200	0.98	+	0	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2962108	2962200	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	intron	2962201	2962290	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2962291	2962353	1	+	0	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2962291	2962353	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	intron	2962354	2962445	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2962446	2962557	1	+	0	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2962446	2962557	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	intron	2962558	2962638	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2962639	2962724	1	+	2	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2962639	2962724	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	intron	2962725	2962809	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2962810	2962868	1	+	0	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2962810	2962868	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	intron	2962869	2962966	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2962967	2963069	1	+	1	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2962967	2963069	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	intron	2963070	2963159	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2963160	2963220	1	+	0	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2963160	2963220	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	intron	2963221	2963309	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2963310	2963392	1	+	2	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2963310	2963392	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	intron	2963393	2963480	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2963481	2963558	0.99	+	0	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2963481	2963558	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	intron	2963559	2963664	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	CDS	2963665	2963721	0.98	+	0	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	exon	2963665	2963721	.	+	.	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
Ledus.S3	AUGUSTUS	stop_codon	2963722	2963724	.	+	0	transcript_id "Ledus.S3G037800.t1"; gene_id "Ledus.S3G037800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11546.t1 is derived from g5164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5215233	5219257	.	+	.	Ledus.S4G070200
Ledus.S4	AUGUSTUS	transcript	5215233	5219257	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	start_codon	5215233	5215235	.	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5215233	5215331	0.58	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5215233	5215331	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5215332	5215560	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5215561	5215598	0.6	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5215561	5215598	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5215599	5215737	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5215738	5215831	0.94	+	1	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5215738	5215831	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5215832	5215952	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5215953	5216066	1	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5215953	5216066	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5216067	5216152	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5216153	5216296	1	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5216153	5216296	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5216297	5216384	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5216385	5216489	1	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5216385	5216489	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5216490	5216574	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5216575	5216733	1	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5216575	5216733	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5216734	5216838	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5216839	5216907	0.84	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5216839	5216907	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5216908	5217014	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5217015	5217104	0.97	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5217015	5217104	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5217105	5217193	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5217194	5217349	1	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5217194	5217349	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5217350	5217443	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5217444	5217643	0.92	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5217444	5217643	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5217644	5217853	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5217854	5217932	0.9	+	1	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5217854	5217932	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5217933	5218086	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5218087	5218201	0.98	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5218087	5218201	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5218202	5218303	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5218304	5218440	0.95	+	2	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5218304	5218440	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5218441	5218542	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5218543	5218603	1	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5218543	5218603	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5218604	5218700	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5218701	5218866	1	+	2	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5218701	5218866	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5218867	5218962	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5218963	5219051	1	+	1	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5218963	5219051	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	intron	5219052	5219138	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	CDS	5219139	5219257	0.8	+	2	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	exon	5219139	5219257	.	+	.	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
Ledus.S4	AUGUSTUS	stop_codon	5219258	5219260	.	+	0	transcript_id "Ledus.S4G070200.t1"; gene_id "Ledus.S4G070200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4874.t1 is derived from g2312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20485299	20487800	.	-	.	Ledus.S1G229500
Ledus.S1	AUGUSTUS	transcript	20485299	20487800	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	stop_codon	20485296	20485298	.	-	0	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	CDS	20485299	20485378	0.98	-	2	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	exon	20485299	20485378	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	intron	20485379	20485465	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	CDS	20485466	20485544	1	-	0	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	exon	20485466	20485544	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	intron	20485545	20485613	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	CDS	20485614	20485686	1	-	1	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	exon	20485614	20485686	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	intron	20485687	20485780	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	CDS	20485781	20485927	1	-	1	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	exon	20485781	20485927	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	intron	20485928	20486031	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	CDS	20486032	20486079	0.95	-	1	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	exon	20486032	20486079	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	intron	20486080	20486167	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	CDS	20486168	20486247	1	-	0	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	exon	20486168	20486247	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	intron	20486248	20486337	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	CDS	20486338	20486665	1	-	1	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	exon	20486338	20486665	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	intron	20486666	20486795	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	CDS	20486796	20486850	1	-	2	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	exon	20486796	20486850	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	intron	20486851	20486978	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	CDS	20486979	20487114	0.98	-	0	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	exon	20486979	20487114	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	intron	20487115	20487230	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	CDS	20487231	20487366	1	-	1	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	exon	20487231	20487366	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	intron	20487367	20487458	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	CDS	20487459	20487532	1	-	0	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	exon	20487459	20487532	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	intron	20487533	20487620	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	CDS	20487621	20487800	0.99	-	0	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	exon	20487621	20487800	.	-	.	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
Ledus.S1	AUGUSTUS	start_codon	20487798	20487800	.	-	0	transcript_id "Ledus.S1G229500.t1"; gene_id "Ledus.S1G229500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9822.t1 is derived from g10852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10175498	10176820	.	+	.	Ledus.S3G129900
Ledus.S3	AUGUSTUS	transcript	10175498	10176820	.	+	.	transcript_id "Ledus.S3G129900.t1"; gene_id "Ledus.S3G129900"
Ledus.S3	AUGUSTUS	start_codon	10175498	10175500	.	+	0	transcript_id "Ledus.S3G129900.t1"; gene_id "Ledus.S3G129900"
Ledus.S3	AUGUSTUS	CDS	10175498	10175798	0.76	+	0	transcript_id "Ledus.S3G129900.t1"; gene_id "Ledus.S3G129900"
Ledus.S3	AUGUSTUS	exon	10175498	10175798	.	+	.	transcript_id "Ledus.S3G129900.t1"; gene_id "Ledus.S3G129900"
Ledus.S3	AUGUSTUS	intron	10175799	10175873	.	+	.	transcript_id "Ledus.S3G129900.t1"; gene_id "Ledus.S3G129900"
Ledus.S3	AUGUSTUS	CDS	10175874	10176099	0.74	+	2	transcript_id "Ledus.S3G129900.t1"; gene_id "Ledus.S3G129900"
Ledus.S3	AUGUSTUS	exon	10175874	10176099	.	+	.	transcript_id "Ledus.S3G129900.t1"; gene_id "Ledus.S3G129900"
Ledus.S3	AUGUSTUS	intron	10176100	10176399	.	+	.	transcript_id "Ledus.S3G129900.t1"; gene_id "Ledus.S3G129900"
Ledus.S3	AUGUSTUS	CDS	10176400	10176820	0.91	+	1	transcript_id "Ledus.S3G129900.t1"; gene_id "Ledus.S3G129900"
Ledus.S3	AUGUSTUS	exon	10176400	10176820	.	+	.	transcript_id "Ledus.S3G129900.t1"; gene_id "Ledus.S3G129900"
Ledus.S3	AUGUSTUS	stop_codon	10176821	10176823	.	+	0	transcript_id "Ledus.S3G129900.t1"; gene_id "Ledus.S3G129900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5531.t1 is derived from g2970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24963876	24965990	.	+	.	Ledus.S1G295200
Ledus.S1	AUGUSTUS	transcript	24963876	24965990	.	+	.	transcript_id "Ledus.S1G295200.t1"; gene_id "Ledus.S1G295200"
Ledus.S1	AUGUSTUS	start_codon	24963876	24963878	.	+	0	transcript_id "Ledus.S1G295200.t1"; gene_id "Ledus.S1G295200"
Ledus.S1	AUGUSTUS	CDS	24963876	24965990	1	+	0	transcript_id "Ledus.S1G295200.t1"; gene_id "Ledus.S1G295200"
Ledus.S1	AUGUSTUS	exon	24963876	24965990	.	+	.	transcript_id "Ledus.S1G295200.t1"; gene_id "Ledus.S1G295200"
Ledus.S1	AUGUSTUS	stop_codon	24965991	24965993	.	+	0	transcript_id "Ledus.S1G295200.t1"; gene_id "Ledus.S1G295200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg345.t1 is derived from g7206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1838562	1839493	.	+	.	Ledus.S2G022700
Ledus.S2	AUGUSTUS	transcript	1838562	1839493	.	+	.	transcript_id "Ledus.S2G022700.t1"; gene_id "Ledus.S2G022700"
Ledus.S2	AUGUSTUS	start_codon	1838562	1838564	.	+	0	transcript_id "Ledus.S2G022700.t1"; gene_id "Ledus.S2G022700"
Ledus.S2	AUGUSTUS	CDS	1838562	1838752	0.86	+	0	transcript_id "Ledus.S2G022700.t1"; gene_id "Ledus.S2G022700"
Ledus.S2	AUGUSTUS	exon	1838562	1838752	.	+	.	transcript_id "Ledus.S2G022700.t1"; gene_id "Ledus.S2G022700"
Ledus.S2	AUGUSTUS	intron	1838753	1838973	.	+	.	transcript_id "Ledus.S2G022700.t1"; gene_id "Ledus.S2G022700"
Ledus.S2	AUGUSTUS	CDS	1838974	1839367	0.57	+	1	transcript_id "Ledus.S2G022700.t1"; gene_id "Ledus.S2G022700"
Ledus.S2	AUGUSTUS	exon	1838974	1839367	.	+	.	transcript_id "Ledus.S2G022700.t1"; gene_id "Ledus.S2G022700"
Ledus.S2	AUGUSTUS	intron	1839368	1839472	.	+	.	transcript_id "Ledus.S2G022700.t1"; gene_id "Ledus.S2G022700"
Ledus.S2	AUGUSTUS	CDS	1839473	1839493	0.58	+	0	transcript_id "Ledus.S2G022700.t1"; gene_id "Ledus.S2G022700"
Ledus.S2	AUGUSTUS	exon	1839473	1839493	.	+	.	transcript_id "Ledus.S2G022700.t1"; gene_id "Ledus.S2G022700"
Ledus.S2	AUGUSTUS	stop_codon	1839494	1839496	.	+	0	transcript_id "Ledus.S2G022700.t1"; gene_id "Ledus.S2G022700"
# This transcript jg4516.t2 is derived from g1953.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4517.t1 is derived from g1954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17479207	17480015	.	+	.	Ledus.S1G193800
Ledus.S1	AUGUSTUS	transcript	17479207	17480015	.	+	.	transcript_id "Ledus.S1G193800.t1"; gene_id "Ledus.S1G193800"
Ledus.S1	AUGUSTUS	start_codon	17479207	17479209	.	+	0	transcript_id "Ledus.S1G193800.t1"; gene_id "Ledus.S1G193800"
Ledus.S1	AUGUSTUS	CDS	17479207	17479344	0.74	+	0	transcript_id "Ledus.S1G193800.t1"; gene_id "Ledus.S1G193800"
Ledus.S1	AUGUSTUS	exon	17479207	17479344	.	+	.	transcript_id "Ledus.S1G193800.t1"; gene_id "Ledus.S1G193800"
Ledus.S1	AUGUSTUS	intron	17479345	17479421	.	+	.	transcript_id "Ledus.S1G193800.t1"; gene_id "Ledus.S1G193800"
Ledus.S1	AUGUSTUS	CDS	17479422	17480015	1	+	0	transcript_id "Ledus.S1G193800.t1"; gene_id "Ledus.S1G193800"
Ledus.S1	AUGUSTUS	exon	17479422	17480015	.	+	.	transcript_id "Ledus.S1G193800.t1"; gene_id "Ledus.S1G193800"
Ledus.S1	AUGUSTUS	stop_codon	17480016	17480018	.	+	0	transcript_id "Ledus.S1G193800.t1"; gene_id "Ledus.S1G193800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg17.t1 is derived from g9540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C20	AUGUSTUS	gene	22507	22990	.	+	.	Ledus.C20G000300
Ledus.C20	AUGUSTUS	transcript	22507	22990	.	+	.	transcript_id "Ledus.C20G000300.t1"; gene_id "Ledus.C20G000300"
Ledus.C20	AUGUSTUS	start_codon	22507	22509	.	+	0	transcript_id "Ledus.C20G000300.t1"; gene_id "Ledus.C20G000300"
Ledus.C20	AUGUSTUS	CDS	22507	22841	0.26	+	0	transcript_id "Ledus.C20G000300.t1"; gene_id "Ledus.C20G000300"
Ledus.C20	AUGUSTUS	exon	22507	22841	.	+	.	transcript_id "Ledus.C20G000300.t1"; gene_id "Ledus.C20G000300"
Ledus.C20	AUGUSTUS	intron	22842	22980	.	+	.	transcript_id "Ledus.C20G000300.t1"; gene_id "Ledus.C20G000300"
Ledus.C20	AUGUSTUS	CDS	22981	22990	0.42	+	1	transcript_id "Ledus.C20G000300.t1"; gene_id "Ledus.C20G000300"
Ledus.C20	AUGUSTUS	exon	22981	22990	.	+	.	transcript_id "Ledus.C20G000300.t1"; gene_id "Ledus.C20G000300"
Ledus.C20	AUGUSTUS	stop_codon	22991	22993	.	+	0	transcript_id "Ledus.C20G000300.t1"; gene_id "Ledus.C20G000300"
# This transcript jg6228.t2 is derived from g3671.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6229.t1 is derived from g3672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29757523	29760800	.	+	.	Ledus.S1G365000
Ledus.S1	AUGUSTUS	transcript	29757523	29760800	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	start_codon	29757523	29757525	.	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29757523	29757780	0.97	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29757523	29757780	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	intron	29757781	29758017	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29758018	29758143	1	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29758018	29758143	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	intron	29758144	29758248	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29758249	29758452	1	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29758249	29758452	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	intron	29758453	29758625	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29758626	29758795	0.95	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29758626	29758795	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	intron	29758796	29758896	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29758897	29759032	0.95	+	1	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29758897	29759032	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	intron	29759033	29759179	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29759180	29759296	1	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29759180	29759296	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	intron	29759297	29759396	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29759397	29759516	1	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29759397	29759516	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	intron	29759517	29759640	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29759641	29759739	1	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29759641	29759739	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	intron	29759740	29759879	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29759880	29759969	1	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29759880	29759969	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	intron	29759970	29760124	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29760125	29760212	1	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29760125	29760212	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	intron	29760213	29760303	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29760304	29760392	0.86	+	2	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29760304	29760392	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	intron	29760393	29760501	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29760502	29760576	1	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29760502	29760576	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	intron	29760577	29760698	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	CDS	29760699	29760800	0.97	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	exon	29760699	29760800	.	+	.	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
Ledus.S1	AUGUSTUS	stop_codon	29760801	29760803	.	+	0	transcript_id "Ledus.S1G365000.t1"; gene_id "Ledus.S1G365000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10780.t1 is derived from g11812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17610448	17611503	.	+	.	Ledus.S3G225700
Ledus.S3	AUGUSTUS	transcript	17610448	17611503	.	+	.	transcript_id "Ledus.S3G225700.t1"; gene_id "Ledus.S3G225700"
Ledus.S3	AUGUSTUS	start_codon	17610448	17610450	.	+	0	transcript_id "Ledus.S3G225700.t1"; gene_id "Ledus.S3G225700"
Ledus.S3	AUGUSTUS	CDS	17610448	17610944	1	+	0	transcript_id "Ledus.S3G225700.t1"; gene_id "Ledus.S3G225700"
Ledus.S3	AUGUSTUS	exon	17610448	17610944	.	+	.	transcript_id "Ledus.S3G225700.t1"; gene_id "Ledus.S3G225700"
Ledus.S3	AUGUSTUS	intron	17610945	17611078	.	+	.	transcript_id "Ledus.S3G225700.t1"; gene_id "Ledus.S3G225700"
Ledus.S3	AUGUSTUS	CDS	17611079	17611231	1	+	1	transcript_id "Ledus.S3G225700.t1"; gene_id "Ledus.S3G225700"
Ledus.S3	AUGUSTUS	exon	17611079	17611231	.	+	.	transcript_id "Ledus.S3G225700.t1"; gene_id "Ledus.S3G225700"
Ledus.S3	AUGUSTUS	intron	17611232	17611319	.	+	.	transcript_id "Ledus.S3G225700.t1"; gene_id "Ledus.S3G225700"
Ledus.S3	AUGUSTUS	CDS	17611320	17611503	0.95	+	1	transcript_id "Ledus.S3G225700.t1"; gene_id "Ledus.S3G225700"
Ledus.S3	AUGUSTUS	exon	17611320	17611503	.	+	.	transcript_id "Ledus.S3G225700.t1"; gene_id "Ledus.S3G225700"
Ledus.S3	AUGUSTUS	stop_codon	17611504	17611506	.	+	0	transcript_id "Ledus.S3G225700.t1"; gene_id "Ledus.S3G225700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg818.t1 is derived from g7679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5309287	5312600	.	+	.	Ledus.S2G070000
Ledus.S2	AUGUSTUS	transcript	5309287	5312600	.	+	.	transcript_id "Ledus.S2G070000.t1"; gene_id "Ledus.S2G070000"
Ledus.S2	AUGUSTUS	start_codon	5309287	5309289	.	+	0	transcript_id "Ledus.S2G070000.t1"; gene_id "Ledus.S2G070000"
Ledus.S2	AUGUSTUS	CDS	5309287	5310495	0.8	+	0	transcript_id "Ledus.S2G070000.t1"; gene_id "Ledus.S2G070000"
Ledus.S2	AUGUSTUS	exon	5309287	5310495	.	+	.	transcript_id "Ledus.S2G070000.t1"; gene_id "Ledus.S2G070000"
Ledus.S2	AUGUSTUS	intron	5310496	5310691	.	+	.	transcript_id "Ledus.S2G070000.t1"; gene_id "Ledus.S2G070000"
Ledus.S2	AUGUSTUS	CDS	5310692	5310983	1	+	0	transcript_id "Ledus.S2G070000.t1"; gene_id "Ledus.S2G070000"
Ledus.S2	AUGUSTUS	exon	5310692	5310983	.	+	.	transcript_id "Ledus.S2G070000.t1"; gene_id "Ledus.S2G070000"
Ledus.S2	AUGUSTUS	intron	5310984	5311152	.	+	.	transcript_id "Ledus.S2G070000.t1"; gene_id "Ledus.S2G070000"
Ledus.S2	AUGUSTUS	CDS	5311153	5312600	0.79	+	2	transcript_id "Ledus.S2G070000.t1"; gene_id "Ledus.S2G070000"
Ledus.S2	AUGUSTUS	exon	5311153	5312600	.	+	.	transcript_id "Ledus.S2G070000.t1"; gene_id "Ledus.S2G070000"
Ledus.S2	AUGUSTUS	stop_codon	5312601	5312603	.	+	0	transcript_id "Ledus.S2G070000.t1"; gene_id "Ledus.S2G070000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7947.t1 is derived from g12618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8045810	8047456	.	+	.	Ledus.S5G072500
Ledus.S5	AUGUSTUS	transcript	8045810	8047456	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	start_codon	8045810	8045812	.	+	0	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	CDS	8045810	8045869	0.68	+	0	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	exon	8045810	8045869	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	intron	8045870	8045953	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	CDS	8045954	8046040	1	+	0	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	exon	8045954	8046040	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	intron	8046041	8046114	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	CDS	8046115	8046183	1	+	0	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	exon	8046115	8046183	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	intron	8046184	8046270	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	CDS	8046271	8046464	0.99	+	0	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	exon	8046271	8046464	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	intron	8046465	8046567	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	CDS	8046568	8046709	0.89	+	1	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	exon	8046568	8046709	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	intron	8046710	8046807	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	CDS	8046808	8047017	0.99	+	0	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	exon	8046808	8047017	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	intron	8047018	8047100	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	CDS	8047101	8047178	1	+	0	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	exon	8047101	8047178	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	intron	8047179	8047255	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	CDS	8047256	8047456	0.32	+	0	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	exon	8047256	8047456	.	+	.	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
Ledus.S5	AUGUSTUS	stop_codon	8047457	8047459	.	+	0	transcript_id "Ledus.S5G072500.t1"; gene_id "Ledus.S5G072500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9339.t1 is derived from g10369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6209502	6209910	.	-	.	Ledus.S3G081600
Ledus.S3	AUGUSTUS	transcript	6209502	6209910	.	-	.	transcript_id "Ledus.S3G081600.t1"; gene_id "Ledus.S3G081600"
Ledus.S3	AUGUSTUS	stop_codon	6209499	6209501	.	-	0	transcript_id "Ledus.S3G081600.t1"; gene_id "Ledus.S3G081600"
Ledus.S3	AUGUSTUS	CDS	6209502	6209728	0.8	-	2	transcript_id "Ledus.S3G081600.t1"; gene_id "Ledus.S3G081600"
Ledus.S3	AUGUSTUS	exon	6209502	6209728	.	-	.	transcript_id "Ledus.S3G081600.t1"; gene_id "Ledus.S3G081600"
Ledus.S3	AUGUSTUS	intron	6209729	6209825	.	-	.	transcript_id "Ledus.S3G081600.t1"; gene_id "Ledus.S3G081600"
Ledus.S3	AUGUSTUS	CDS	6209826	6209910	0.74	-	0	transcript_id "Ledus.S3G081600.t1"; gene_id "Ledus.S3G081600"
Ledus.S3	AUGUSTUS	exon	6209826	6209910	.	-	.	transcript_id "Ledus.S3G081600.t1"; gene_id "Ledus.S3G081600"
Ledus.S3	AUGUSTUS	start_codon	6209908	6209910	.	-	0	transcript_id "Ledus.S3G081600.t1"; gene_id "Ledus.S3G081600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8751.t1 is derived from g9781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1816437	1817813	.	+	.	Ledus.S3G022800
Ledus.S3	AUGUSTUS	transcript	1816437	1817813	.	+	.	transcript_id "Ledus.S3G022800.t1"; gene_id "Ledus.S3G022800"
Ledus.S3	AUGUSTUS	start_codon	1816437	1816439	.	+	0	transcript_id "Ledus.S3G022800.t1"; gene_id "Ledus.S3G022800"
Ledus.S3	AUGUSTUS	CDS	1816437	1817813	0.99	+	0	transcript_id "Ledus.S3G022800.t1"; gene_id "Ledus.S3G022800"
Ledus.S3	AUGUSTUS	exon	1816437	1817813	.	+	.	transcript_id "Ledus.S3G022800.t1"; gene_id "Ledus.S3G022800"
Ledus.S3	AUGUSTUS	stop_codon	1817814	1817816	.	+	0	transcript_id "Ledus.S3G022800.t1"; gene_id "Ledus.S3G022800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4251.t1 is derived from g1687.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15768948	15769703	.	-	.	Ledus.S1G167200
Ledus.S1	AUGUSTUS	transcript	15768948	15769703	.	-	.	transcript_id "Ledus.S1G167200.t1"; gene_id "Ledus.S1G167200"
Ledus.S1	AUGUSTUS	stop_codon	15768945	15768947	.	-	0	transcript_id "Ledus.S1G167200.t1"; gene_id "Ledus.S1G167200"
Ledus.S1	AUGUSTUS	CDS	15768948	15769703	0.97	-	0	transcript_id "Ledus.S1G167200.t1"; gene_id "Ledus.S1G167200"
Ledus.S1	AUGUSTUS	exon	15768948	15769703	.	-	.	transcript_id "Ledus.S1G167200.t1"; gene_id "Ledus.S1G167200"
Ledus.S1	AUGUSTUS	start_codon	15769701	15769703	.	-	0	transcript_id "Ledus.S1G167200.t1"; gene_id "Ledus.S1G167200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1409.t1 is derived from g8270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9923198	9925076	.	-	.	Ledus.S2G129100
Ledus.S2	AUGUSTUS	transcript	9923198	9925076	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	stop_codon	9923195	9923197	.	-	0	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	CDS	9923198	9923536	0.98	-	0	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	exon	9923198	9923536	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	intron	9923537	9923622	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	CDS	9923623	9923939	1	-	2	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	exon	9923623	9923939	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	intron	9923940	9924037	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	CDS	9924038	9924116	1	-	0	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	exon	9924038	9924116	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	intron	9924117	9924204	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	CDS	9924205	9924281	1	-	2	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	exon	9924205	9924281	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	intron	9924282	9924382	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	CDS	9924383	9924489	1	-	1	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	exon	9924383	9924489	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	intron	9924490	9924556	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	CDS	9924557	9924651	1	-	0	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	exon	9924557	9924651	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	intron	9924652	9924735	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	CDS	9924736	9924849	1	-	0	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	exon	9924736	9924849	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	intron	9924850	9924944	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	CDS	9924945	9925076	1	-	0	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	exon	9924945	9925076	.	-	.	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
Ledus.S2	AUGUSTUS	start_codon	9925074	9925076	.	-	0	transcript_id "Ledus.S2G129100.t1"; gene_id "Ledus.S2G129100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8017.t1 is derived from g12688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8491707	8492615	.	-	.	Ledus.S5G079500
Ledus.S5	AUGUSTUS	transcript	8491707	8492615	.	-	.	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	stop_codon	8491704	8491706	.	-	0	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	CDS	8491707	8491718	0.93	-	0	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	exon	8491707	8491718	.	-	.	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	intron	8491719	8491879	.	-	.	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	CDS	8491880	8492012	0.92	-	1	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	exon	8491880	8492012	.	-	.	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	intron	8492013	8492222	.	-	.	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	CDS	8492223	8492234	0.9	-	1	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	exon	8492223	8492234	.	-	.	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	intron	8492235	8492520	.	-	.	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	CDS	8492521	8492615	0.47	-	0	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	exon	8492521	8492615	.	-	.	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
Ledus.S5	AUGUSTUS	start_codon	8492613	8492615	.	-	0	transcript_id "Ledus.S5G079500.t1"; gene_id "Ledus.S5G079500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8861.t1 is derived from g9891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2343004	2343630	.	+	.	Ledus.S3G033800
Ledus.S3	AUGUSTUS	transcript	2343004	2343630	.	+	.	transcript_id "Ledus.S3G033800.t1"; gene_id "Ledus.S3G033800"
Ledus.S3	AUGUSTUS	start_codon	2343004	2343006	.	+	0	transcript_id "Ledus.S3G033800.t1"; gene_id "Ledus.S3G033800"
Ledus.S3	AUGUSTUS	CDS	2343004	2343630	0.66	+	0	transcript_id "Ledus.S3G033800.t1"; gene_id "Ledus.S3G033800"
Ledus.S3	AUGUSTUS	exon	2343004	2343630	.	+	.	transcript_id "Ledus.S3G033800.t1"; gene_id "Ledus.S3G033800"
Ledus.S3	AUGUSTUS	stop_codon	2343631	2343633	.	+	0	transcript_id "Ledus.S3G033800.t1"; gene_id "Ledus.S3G033800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6637.t1 is derived from g4080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32812385	32812730	.	-	.	Ledus.S1G405800
Ledus.S1	AUGUSTUS	transcript	32812385	32812730	.	-	.	transcript_id "Ledus.S1G405800.t1"; gene_id "Ledus.S1G405800"
Ledus.S1	AUGUSTUS	stop_codon	32812382	32812384	.	-	0	transcript_id "Ledus.S1G405800.t1"; gene_id "Ledus.S1G405800"
Ledus.S1	AUGUSTUS	CDS	32812385	32812539	0.46	-	2	transcript_id "Ledus.S1G405800.t1"; gene_id "Ledus.S1G405800"
Ledus.S1	AUGUSTUS	exon	32812385	32812539	.	-	.	transcript_id "Ledus.S1G405800.t1"; gene_id "Ledus.S1G405800"
Ledus.S1	AUGUSTUS	intron	32812540	32812651	.	-	.	transcript_id "Ledus.S1G405800.t1"; gene_id "Ledus.S1G405800"
Ledus.S1	AUGUSTUS	CDS	32812652	32812730	0.28	-	0	transcript_id "Ledus.S1G405800.t1"; gene_id "Ledus.S1G405800"
Ledus.S1	AUGUSTUS	exon	32812652	32812730	.	-	.	transcript_id "Ledus.S1G405800.t1"; gene_id "Ledus.S1G405800"
Ledus.S1	AUGUSTUS	start_codon	32812728	32812730	.	-	0	transcript_id "Ledus.S1G405800.t1"; gene_id "Ledus.S1G405800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9795.t1 is derived from g10825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9858376	9858847	.	-	.	Ledus.S3G127200
Ledus.S3	AUGUSTUS	transcript	9858376	9858847	.	-	.	transcript_id "Ledus.S3G127200.t1"; gene_id "Ledus.S3G127200"
Ledus.S3	AUGUSTUS	stop_codon	9858373	9858375	.	-	0	transcript_id "Ledus.S3G127200.t1"; gene_id "Ledus.S3G127200"
Ledus.S3	AUGUSTUS	CDS	9858376	9858600	0.4	-	0	transcript_id "Ledus.S3G127200.t1"; gene_id "Ledus.S3G127200"
Ledus.S3	AUGUSTUS	exon	9858376	9858600	.	-	.	transcript_id "Ledus.S3G127200.t1"; gene_id "Ledus.S3G127200"
Ledus.S3	AUGUSTUS	intron	9858601	9858679	.	-	.	transcript_id "Ledus.S3G127200.t1"; gene_id "Ledus.S3G127200"
Ledus.S3	AUGUSTUS	CDS	9858680	9858847	0.81	-	0	transcript_id "Ledus.S3G127200.t1"; gene_id "Ledus.S3G127200"
Ledus.S3	AUGUSTUS	exon	9858680	9858847	.	-	.	transcript_id "Ledus.S3G127200.t1"; gene_id "Ledus.S3G127200"
Ledus.S3	AUGUSTUS	start_codon	9858845	9858847	.	-	0	transcript_id "Ledus.S3G127200.t1"; gene_id "Ledus.S3G127200"
# This transcript jg1940.t2 is derived from g8803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1941.t1 is derived from g8804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13616596	13616817	.	+	.	Ledus.S2G182300
Ledus.S2	AUGUSTUS	transcript	13616596	13616817	.	+	.	transcript_id "Ledus.S2G182300.t1"; gene_id "Ledus.S2G182300"
Ledus.S2	AUGUSTUS	start_codon	13616596	13616598	.	+	0	transcript_id "Ledus.S2G182300.t1"; gene_id "Ledus.S2G182300"
Ledus.S2	AUGUSTUS	CDS	13616596	13616817	0.72	+	0	transcript_id "Ledus.S2G182300.t1"; gene_id "Ledus.S2G182300"
Ledus.S2	AUGUSTUS	exon	13616596	13616817	.	+	.	transcript_id "Ledus.S2G182300.t1"; gene_id "Ledus.S2G182300"
Ledus.S2	AUGUSTUS	stop_codon	13616818	13616820	.	+	0	transcript_id "Ledus.S2G182300.t1"; gene_id "Ledus.S2G182300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11247.t1 is derived from g4865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2922148	2926396	.	+	.	Ledus.S4G040300
Ledus.S4	AUGUSTUS	transcript	2922148	2926396	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	start_codon	2922148	2922150	.	+	0	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2922148	2923460	1	+	0	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2922148	2923460	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2923461	2923695	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2923696	2923956	0.99	+	1	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2923696	2923956	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2923957	2924043	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2924044	2924158	1	+	1	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2924044	2924158	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2924159	2924237	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2924238	2924738	1	+	0	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2924238	2924738	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2924739	2924859	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2924860	2925424	0.98	+	0	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2924860	2925424	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2925425	2925584	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2925585	2925722	1	+	2	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2925585	2925722	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2925723	2925965	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2925966	2926009	1	+	2	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2925966	2926009	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2926010	2926351	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2926352	2926396	0.99	+	0	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2926352	2926396	.	+	.	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	stop_codon	2926397	2926399	.	+	0	transcript_id "Ledus.S4G040300.t1"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	transcript	2922148	2926396	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	start_codon	2922148	2922150	.	+	0	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2922148	2923460	0.99	+	0	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2922148	2923460	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2923461	2923695	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2923696	2923956	0.98	+	1	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2923696	2923956	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2923957	2924043	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2924044	2924158	1	+	1	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2924044	2924158	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2924159	2924237	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2924238	2924738	0.99	+	0	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2924238	2924738	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2924739	2924859	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2924860	2925424	0.98	+	0	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2924860	2925424	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2925425	2925584	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2925585	2925722	1	+	2	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2925585	2925722	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2925723	2925965	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2925966	2926009	1	+	2	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2925966	2926009	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	intron	2926010	2926348	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	CDS	2926349	2926396	1	+	0	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	exon	2926349	2926396	.	+	.	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
Ledus.S4	AUGUSTUS	stop_codon	2926397	2926399	.	+	0	transcript_id "Ledus.S4G040300.t2"; gene_id "Ledus.S4G040300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2242.t1 is derived from g9105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16427785	16428816	.	-	.	Ledus.S2G212400
Ledus.S2	AUGUSTUS	transcript	16427785	16428816	.	-	.	transcript_id "Ledus.S2G212400.t1"; gene_id "Ledus.S2G212400"
Ledus.S2	AUGUSTUS	stop_codon	16427782	16427784	.	-	0	transcript_id "Ledus.S2G212400.t1"; gene_id "Ledus.S2G212400"
Ledus.S2	AUGUSTUS	CDS	16427785	16428816	0.42	-	0	transcript_id "Ledus.S2G212400.t1"; gene_id "Ledus.S2G212400"
Ledus.S2	AUGUSTUS	exon	16427785	16428816	.	-	.	transcript_id "Ledus.S2G212400.t1"; gene_id "Ledus.S2G212400"
Ledus.S2	AUGUSTUS	start_codon	16428814	16428816	.	-	0	transcript_id "Ledus.S2G212400.t1"; gene_id "Ledus.S2G212400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3961.t1 is derived from g1397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13772348	13775557	.	+	.	Ledus.S1G138200
Ledus.S1	AUGUSTUS	transcript	13772348	13775557	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	start_codon	13772348	13772350	.	+	0	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	CDS	13772348	13772782	0.98	+	0	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	exon	13772348	13772782	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	intron	13772783	13772886	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	CDS	13772887	13773041	0.99	+	0	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	exon	13772887	13773041	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	intron	13773042	13773182	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	CDS	13773183	13773300	1	+	1	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	exon	13773183	13773300	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	intron	13773301	13773433	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	CDS	13773434	13773535	1	+	0	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	exon	13773434	13773535	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	intron	13773536	13773626	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	CDS	13773627	13773786	0.95	+	0	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	exon	13773627	13773786	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	intron	13773787	13773892	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	CDS	13773893	13774001	0.95	+	2	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	exon	13773893	13774001	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	intron	13774002	13774106	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	CDS	13774107	13774209	0.99	+	1	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	exon	13774107	13774209	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	intron	13774210	13774317	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	CDS	13774318	13774468	0.99	+	0	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	exon	13774318	13774468	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	intron	13774469	13774779	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	CDS	13774780	13774912	1	+	2	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	exon	13774780	13774912	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	intron	13774913	13775001	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	CDS	13775002	13775111	1	+	1	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	exon	13775002	13775111	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	intron	13775112	13775246	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	CDS	13775247	13775314	1	+	2	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	exon	13775247	13775314	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	intron	13775315	13775467	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	CDS	13775468	13775557	0.96	+	0	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	exon	13775468	13775557	.	+	.	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
Ledus.S1	AUGUSTUS	stop_codon	13775558	13775560	.	+	0	transcript_id "Ledus.S1G138200.t1"; gene_id "Ledus.S1G138200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11919.t1 is derived from g5538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7743602	7744336	.	+	.	Ledus.S4G107500
Ledus.S4	AUGUSTUS	transcript	7743602	7744336	.	+	.	transcript_id "Ledus.S4G107500.t1"; gene_id "Ledus.S4G107500"
Ledus.S4	AUGUSTUS	start_codon	7743602	7743604	.	+	0	transcript_id "Ledus.S4G107500.t1"; gene_id "Ledus.S4G107500"
Ledus.S4	AUGUSTUS	CDS	7743602	7743716	0.98	+	0	transcript_id "Ledus.S4G107500.t1"; gene_id "Ledus.S4G107500"
Ledus.S4	AUGUSTUS	exon	7743602	7743716	.	+	.	transcript_id "Ledus.S4G107500.t1"; gene_id "Ledus.S4G107500"
Ledus.S4	AUGUSTUS	intron	7743717	7743807	.	+	.	transcript_id "Ledus.S4G107500.t1"; gene_id "Ledus.S4G107500"
Ledus.S4	AUGUSTUS	CDS	7743808	7743908	1	+	2	transcript_id "Ledus.S4G107500.t1"; gene_id "Ledus.S4G107500"
Ledus.S4	AUGUSTUS	exon	7743808	7743908	.	+	.	transcript_id "Ledus.S4G107500.t1"; gene_id "Ledus.S4G107500"
Ledus.S4	AUGUSTUS	intron	7743909	7744000	.	+	.	transcript_id "Ledus.S4G107500.t1"; gene_id "Ledus.S4G107500"
Ledus.S4	AUGUSTUS	CDS	7744001	7744336	0.97	+	0	transcript_id "Ledus.S4G107500.t1"; gene_id "Ledus.S4G107500"
Ledus.S4	AUGUSTUS	exon	7744001	7744336	.	+	.	transcript_id "Ledus.S4G107500.t1"; gene_id "Ledus.S4G107500"
Ledus.S4	AUGUSTUS	stop_codon	7744337	7744339	.	+	0	transcript_id "Ledus.S4G107500.t1"; gene_id "Ledus.S4G107500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10513.t1 is derived from g11543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15749630	15750253	.	-	.	Ledus.S3G199000
Ledus.S3	AUGUSTUS	transcript	15749630	15750253	.	-	.	transcript_id "Ledus.S3G199000.t1"; gene_id "Ledus.S3G199000"
Ledus.S3	AUGUSTUS	stop_codon	15749627	15749629	.	-	0	transcript_id "Ledus.S3G199000.t1"; gene_id "Ledus.S3G199000"
Ledus.S3	AUGUSTUS	CDS	15749630	15749983	0.4	-	0	transcript_id "Ledus.S3G199000.t1"; gene_id "Ledus.S3G199000"
Ledus.S3	AUGUSTUS	exon	15749630	15749983	.	-	.	transcript_id "Ledus.S3G199000.t1"; gene_id "Ledus.S3G199000"
Ledus.S3	AUGUSTUS	intron	15749984	15750181	.	-	.	transcript_id "Ledus.S3G199000.t1"; gene_id "Ledus.S3G199000"
Ledus.S3	AUGUSTUS	CDS	15750182	15750253	0.68	-	0	transcript_id "Ledus.S3G199000.t1"; gene_id "Ledus.S3G199000"
Ledus.S3	AUGUSTUS	exon	15750182	15750253	.	-	.	transcript_id "Ledus.S3G199000.t1"; gene_id "Ledus.S3G199000"
Ledus.S3	AUGUSTUS	start_codon	15750251	15750253	.	-	0	transcript_id "Ledus.S3G199000.t1"; gene_id "Ledus.S3G199000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1385.t1 is derived from g8246.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9722700	9723974	.	+	.	Ledus.S2G126700
Ledus.S2	AUGUSTUS	transcript	9722700	9723974	.	+	.	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	start_codon	9722700	9722702	.	+	0	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	CDS	9722700	9723014	0.96	+	0	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	exon	9722700	9723014	.	+	.	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	intron	9723015	9723105	.	+	.	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	CDS	9723106	9723158	1	+	0	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	exon	9723106	9723158	.	+	.	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	intron	9723159	9723327	.	+	.	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	CDS	9723328	9723400	1	+	1	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	exon	9723328	9723400	.	+	.	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	intron	9723401	9723485	.	+	.	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	CDS	9723486	9723590	1	+	0	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	exon	9723486	9723590	.	+	.	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	intron	9723591	9723673	.	+	.	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	CDS	9723674	9723754	0.99	+	0	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	exon	9723674	9723754	.	+	.	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	intron	9723755	9723863	.	+	.	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	CDS	9723864	9723974	0.99	+	0	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	exon	9723864	9723974	.	+	.	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
Ledus.S2	AUGUSTUS	stop_codon	9723975	9723977	.	+	0	transcript_id "Ledus.S2G126700.t1"; gene_id "Ledus.S2G126700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3360.t1 is derived from g795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7841422	7844811	.	+	.	Ledus.S1G078100
Ledus.S1	AUGUSTUS	transcript	7841422	7844811	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	start_codon	7841422	7841424	.	+	0	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	CDS	7841422	7841751	0.46	+	0	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	exon	7841422	7841751	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	intron	7841752	7841849	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	CDS	7841850	7842086	1	+	0	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	exon	7841850	7842086	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	intron	7842087	7842244	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	CDS	7842245	7842332	1	+	0	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	exon	7842245	7842332	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	intron	7842333	7842493	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	CDS	7842494	7842615	1	+	2	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	exon	7842494	7842615	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	intron	7842616	7842750	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	CDS	7842751	7842890	1	+	0	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	exon	7842751	7842890	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	intron	7842891	7842982	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	CDS	7842983	7843055	0.99	+	1	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	exon	7842983	7843055	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	intron	7843056	7843156	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	CDS	7843157	7843245	1	+	0	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	exon	7843157	7843245	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	intron	7843246	7843439	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	CDS	7843440	7843545	1	+	1	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	exon	7843440	7843545	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	intron	7843546	7843722	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	CDS	7843723	7843935	1	+	0	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	exon	7843723	7843935	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	intron	7843936	7844095	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	CDS	7844096	7844290	1	+	0	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	exon	7844096	7844290	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	intron	7844291	7844383	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	CDS	7844384	7844461	1	+	0	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	exon	7844384	7844461	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	intron	7844462	7844538	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	CDS	7844539	7844811	1	+	0	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	exon	7844539	7844811	.	+	.	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
Ledus.S1	AUGUSTUS	stop_codon	7844812	7844814	.	+	0	transcript_id "Ledus.S1G078100.t1"; gene_id "Ledus.S1G078100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9016.t1 is derived from g10046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3878845	3879612	.	+	.	Ledus.S3G049300
Ledus.S3	AUGUSTUS	transcript	3878845	3879612	.	+	.	transcript_id "Ledus.S3G049300.t1"; gene_id "Ledus.S3G049300"
Ledus.S3	AUGUSTUS	start_codon	3878845	3878847	.	+	0	transcript_id "Ledus.S3G049300.t1"; gene_id "Ledus.S3G049300"
Ledus.S3	AUGUSTUS	CDS	3878845	3879612	0.93	+	0	transcript_id "Ledus.S3G049300.t1"; gene_id "Ledus.S3G049300"
Ledus.S3	AUGUSTUS	exon	3878845	3879612	.	+	.	transcript_id "Ledus.S3G049300.t1"; gene_id "Ledus.S3G049300"
Ledus.S3	AUGUSTUS	stop_codon	3879613	3879615	.	+	0	transcript_id "Ledus.S3G049300.t1"; gene_id "Ledus.S3G049300"
# This transcript jg2390.t2 is derived from g9253.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2390.t3 is derived from g9253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2391.t1 is derived from g9254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17854545	17858388	.	+	.	Ledus.S2G227300
Ledus.S2	AUGUSTUS	transcript	17854545	17858388	.	+	.	transcript_id "Ledus.S2G227300.t1"; gene_id "Ledus.S2G227300"
Ledus.S2	AUGUSTUS	start_codon	17854545	17854547	.	+	0	transcript_id "Ledus.S2G227300.t1"; gene_id "Ledus.S2G227300"
Ledus.S2	AUGUSTUS	CDS	17854545	17857093	0.95	+	0	transcript_id "Ledus.S2G227300.t1"; gene_id "Ledus.S2G227300"
Ledus.S2	AUGUSTUS	exon	17854545	17857093	.	+	.	transcript_id "Ledus.S2G227300.t1"; gene_id "Ledus.S2G227300"
Ledus.S2	AUGUSTUS	intron	17857094	17857164	.	+	.	transcript_id "Ledus.S2G227300.t1"; gene_id "Ledus.S2G227300"
Ledus.S2	AUGUSTUS	CDS	17857165	17857315	1	+	1	transcript_id "Ledus.S2G227300.t1"; gene_id "Ledus.S2G227300"
Ledus.S2	AUGUSTUS	exon	17857165	17857315	.	+	.	transcript_id "Ledus.S2G227300.t1"; gene_id "Ledus.S2G227300"
Ledus.S2	AUGUSTUS	intron	17857316	17857572	.	+	.	transcript_id "Ledus.S2G227300.t1"; gene_id "Ledus.S2G227300"
Ledus.S2	AUGUSTUS	CDS	17857573	17858388	0.92	+	0	transcript_id "Ledus.S2G227300.t1"; gene_id "Ledus.S2G227300"
Ledus.S2	AUGUSTUS	exon	17857573	17858388	.	+	.	transcript_id "Ledus.S2G227300.t1"; gene_id "Ledus.S2G227300"
Ledus.S2	AUGUSTUS	stop_codon	17858389	17858391	.	+	0	transcript_id "Ledus.S2G227300.t1"; gene_id "Ledus.S2G227300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3019.t1 is derived from g454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5359994	5363259	.	-	.	Ledus.S1G044000
Ledus.S1	AUGUSTUS	transcript	5359994	5363259	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	stop_codon	5359991	5359993	.	-	0	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	CDS	5359994	5360098	1	-	0	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	exon	5359994	5360098	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	intron	5360099	5360198	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	CDS	5360199	5360326	1	-	2	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	exon	5360199	5360326	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	intron	5360327	5360413	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	CDS	5360414	5360513	1	-	0	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	exon	5360414	5360513	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	intron	5360514	5360620	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	CDS	5360621	5360831	0.84	-	1	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	exon	5360621	5360831	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	intron	5360832	5360923	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	CDS	5360924	5361101	0.98	-	2	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	exon	5360924	5361101	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	intron	5361102	5361315	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	CDS	5361316	5361476	0.76	-	1	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	exon	5361316	5361476	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	intron	5361477	5361578	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	CDS	5361579	5361612	0.7	-	2	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	exon	5361579	5361612	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	intron	5361613	5361743	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	CDS	5361744	5361841	1	-	1	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	exon	5361744	5361841	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	intron	5361842	5361984	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	CDS	5361985	5362439	1	-	0	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	exon	5361985	5362439	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	intron	5362440	5362546	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	CDS	5362547	5362783	0.9	-	0	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	exon	5362547	5362783	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	intron	5362784	5362880	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	CDS	5362881	5362932	1	-	1	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	exon	5362881	5362932	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	intron	5362933	5363008	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	CDS	5363009	5363259	0.72	-	0	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	exon	5363009	5363259	.	-	.	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
Ledus.S1	AUGUSTUS	start_codon	5363257	5363259	.	-	0	transcript_id "Ledus.S1G044000.t1"; gene_id "Ledus.S1G044000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6374.t1 is derived from g3817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30885909	30886705	.	-	.	Ledus.S1G379500
Ledus.S1	AUGUSTUS	transcript	30885909	30886705	.	-	.	transcript_id "Ledus.S1G379500.t1"; gene_id "Ledus.S1G379500"
Ledus.S1	AUGUSTUS	stop_codon	30885906	30885908	.	-	0	transcript_id "Ledus.S1G379500.t1"; gene_id "Ledus.S1G379500"
Ledus.S1	AUGUSTUS	CDS	30885909	30886040	1	-	0	transcript_id "Ledus.S1G379500.t1"; gene_id "Ledus.S1G379500"
Ledus.S1	AUGUSTUS	exon	30885909	30886040	.	-	.	transcript_id "Ledus.S1G379500.t1"; gene_id "Ledus.S1G379500"
Ledus.S1	AUGUSTUS	intron	30886041	30886111	.	-	.	transcript_id "Ledus.S1G379500.t1"; gene_id "Ledus.S1G379500"
Ledus.S1	AUGUSTUS	CDS	30886112	30886348	1	-	0	transcript_id "Ledus.S1G379500.t1"; gene_id "Ledus.S1G379500"
Ledus.S1	AUGUSTUS	exon	30886112	30886348	.	-	.	transcript_id "Ledus.S1G379500.t1"; gene_id "Ledus.S1G379500"
Ledus.S1	AUGUSTUS	intron	30886349	30886447	.	-	.	transcript_id "Ledus.S1G379500.t1"; gene_id "Ledus.S1G379500"
Ledus.S1	AUGUSTUS	CDS	30886448	30886705	0.56	-	0	transcript_id "Ledus.S1G379500.t1"; gene_id "Ledus.S1G379500"
Ledus.S1	AUGUSTUS	exon	30886448	30886705	.	-	.	transcript_id "Ledus.S1G379500.t1"; gene_id "Ledus.S1G379500"
Ledus.S1	AUGUSTUS	start_codon	30886703	30886705	.	-	0	transcript_id "Ledus.S1G379500.t1"; gene_id "Ledus.S1G379500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11667.t1 is derived from g5286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5820798	5821184	.	+	.	Ledus.S4G082300
Ledus.S4	AUGUSTUS	transcript	5820798	5821184	.	+	.	transcript_id "Ledus.S4G082300.t1"; gene_id "Ledus.S4G082300"
Ledus.S4	AUGUSTUS	start_codon	5820798	5820800	.	+	0	transcript_id "Ledus.S4G082300.t1"; gene_id "Ledus.S4G082300"
Ledus.S4	AUGUSTUS	CDS	5820798	5821184	0.53	+	0	transcript_id "Ledus.S4G082300.t1"; gene_id "Ledus.S4G082300"
Ledus.S4	AUGUSTUS	exon	5820798	5821184	.	+	.	transcript_id "Ledus.S4G082300.t1"; gene_id "Ledus.S4G082300"
Ledus.S4	AUGUSTUS	stop_codon	5821185	5821187	.	+	0	transcript_id "Ledus.S4G082300.t1"; gene_id "Ledus.S4G082300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6600.t1 is derived from g4043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32600339	32601415	.	+	.	Ledus.S1G402100
Ledus.S1	AUGUSTUS	transcript	32600339	32601415	.	+	.	transcript_id "Ledus.S1G402100.t1"; gene_id "Ledus.S1G402100"
Ledus.S1	AUGUSTUS	start_codon	32600339	32600341	.	+	0	transcript_id "Ledus.S1G402100.t1"; gene_id "Ledus.S1G402100"
Ledus.S1	AUGUSTUS	CDS	32600339	32600801	0.53	+	0	transcript_id "Ledus.S1G402100.t1"; gene_id "Ledus.S1G402100"
Ledus.S1	AUGUSTUS	exon	32600339	32600801	.	+	.	transcript_id "Ledus.S1G402100.t1"; gene_id "Ledus.S1G402100"
Ledus.S1	AUGUSTUS	intron	32600802	32600951	.	+	.	transcript_id "Ledus.S1G402100.t1"; gene_id "Ledus.S1G402100"
Ledus.S1	AUGUSTUS	CDS	32600952	32601415	0.71	+	2	transcript_id "Ledus.S1G402100.t1"; gene_id "Ledus.S1G402100"
Ledus.S1	AUGUSTUS	exon	32600952	32601415	.	+	.	transcript_id "Ledus.S1G402100.t1"; gene_id "Ledus.S1G402100"
Ledus.S1	AUGUSTUS	stop_codon	32601416	32601418	.	+	0	transcript_id "Ledus.S1G402100.t1"; gene_id "Ledus.S1G402100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12438.t1 is derived from g6059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12016398	12017276	.	-	.	Ledus.S4G159400
Ledus.S4	AUGUSTUS	transcript	12016398	12017276	.	-	.	transcript_id "Ledus.S4G159400.t1"; gene_id "Ledus.S4G159400"
Ledus.S4	AUGUSTUS	stop_codon	12016395	12016397	.	-	0	transcript_id "Ledus.S4G159400.t1"; gene_id "Ledus.S4G159400"
Ledus.S4	AUGUSTUS	CDS	12016398	12017276	0.96	-	0	transcript_id "Ledus.S4G159400.t1"; gene_id "Ledus.S4G159400"
Ledus.S4	AUGUSTUS	exon	12016398	12017276	.	-	.	transcript_id "Ledus.S4G159400.t1"; gene_id "Ledus.S4G159400"
Ledus.S4	AUGUSTUS	start_codon	12017274	12017276	.	-	0	transcript_id "Ledus.S4G159400.t1"; gene_id "Ledus.S4G159400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11923.t1 is derived from g5542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7809243	7809650	.	-	.	Ledus.S4G107900
Ledus.S4	AUGUSTUS	transcript	7809243	7809650	.	-	.	transcript_id "Ledus.S4G107900.t1"; gene_id "Ledus.S4G107900"
Ledus.S4	AUGUSTUS	stop_codon	7809240	7809242	.	-	0	transcript_id "Ledus.S4G107900.t1"; gene_id "Ledus.S4G107900"
Ledus.S4	AUGUSTUS	CDS	7809243	7809650	0.94	-	0	transcript_id "Ledus.S4G107900.t1"; gene_id "Ledus.S4G107900"
Ledus.S4	AUGUSTUS	exon	7809243	7809650	.	-	.	transcript_id "Ledus.S4G107900.t1"; gene_id "Ledus.S4G107900"
Ledus.S4	AUGUSTUS	start_codon	7809648	7809650	.	-	0	transcript_id "Ledus.S4G107900.t1"; gene_id "Ledus.S4G107900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5591.t1 is derived from g3030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25300689	25301681	.	-	.	Ledus.S1G301200
Ledus.S1	AUGUSTUS	transcript	25300689	25301681	.	-	.	transcript_id "Ledus.S1G301200.t1"; gene_id "Ledus.S1G301200"
Ledus.S1	AUGUSTUS	stop_codon	25300686	25300688	.	-	0	transcript_id "Ledus.S1G301200.t1"; gene_id "Ledus.S1G301200"
Ledus.S1	AUGUSTUS	CDS	25300689	25300943	1	-	0	transcript_id "Ledus.S1G301200.t1"; gene_id "Ledus.S1G301200"
Ledus.S1	AUGUSTUS	exon	25300689	25300943	.	-	.	transcript_id "Ledus.S1G301200.t1"; gene_id "Ledus.S1G301200"
Ledus.S1	AUGUSTUS	intron	25300944	25301024	.	-	.	transcript_id "Ledus.S1G301200.t1"; gene_id "Ledus.S1G301200"
Ledus.S1	AUGUSTUS	CDS	25301025	25301168	0.99	-	0	transcript_id "Ledus.S1G301200.t1"; gene_id "Ledus.S1G301200"
Ledus.S1	AUGUSTUS	exon	25301025	25301168	.	-	.	transcript_id "Ledus.S1G301200.t1"; gene_id "Ledus.S1G301200"
Ledus.S1	AUGUSTUS	intron	25301169	25301270	.	-	.	transcript_id "Ledus.S1G301200.t1"; gene_id "Ledus.S1G301200"
Ledus.S1	AUGUSTUS	CDS	25301271	25301681	0.56	-	0	transcript_id "Ledus.S1G301200.t1"; gene_id "Ledus.S1G301200"
Ledus.S1	AUGUSTUS	exon	25301271	25301681	.	-	.	transcript_id "Ledus.S1G301200.t1"; gene_id "Ledus.S1G301200"
Ledus.S1	AUGUSTUS	start_codon	25301679	25301681	.	-	0	transcript_id "Ledus.S1G301200.t1"; gene_id "Ledus.S1G301200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12902.t1 is derived from g4394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	178423	178857	.	-	.	Ledus.C9G001000
Ledus.C9	AUGUSTUS	transcript	178423	178857	.	-	.	transcript_id "Ledus.C9G001000.t1"; gene_id "Ledus.C9G001000"
Ledus.C9	AUGUSTUS	stop_codon	178420	178422	.	-	0	transcript_id "Ledus.C9G001000.t1"; gene_id "Ledus.C9G001000"
Ledus.C9	AUGUSTUS	CDS	178423	178857	0.12	-	0	transcript_id "Ledus.C9G001000.t1"; gene_id "Ledus.C9G001000"
Ledus.C9	AUGUSTUS	exon	178423	178857	.	-	.	transcript_id "Ledus.C9G001000.t1"; gene_id "Ledus.C9G001000"
Ledus.C9	AUGUSTUS	start_codon	178855	178857	.	-	0	transcript_id "Ledus.C9G001000.t1"; gene_id "Ledus.C9G001000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg229.t1 is derived from g7090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1008078	1009857	.	+	.	Ledus.S2G011100
Ledus.S2	AUGUSTUS	transcript	1008078	1009857	.	+	.	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	start_codon	1008078	1008080	.	+	0	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	CDS	1008078	1008312	0.36	+	0	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	exon	1008078	1008312	.	+	.	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	intron	1008313	1008423	.	+	.	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	CDS	1008424	1008494	0.98	+	2	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	exon	1008424	1008494	.	+	.	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	intron	1008495	1008609	.	+	.	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	CDS	1008610	1008698	0.5	+	0	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	exon	1008610	1008698	.	+	.	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	intron	1008699	1008802	.	+	.	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	CDS	1008803	1009027	0.76	+	1	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	exon	1008803	1009027	.	+	.	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	intron	1009028	1009109	.	+	.	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	CDS	1009110	1009857	1	+	1	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	exon	1009110	1009857	.	+	.	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
Ledus.S2	AUGUSTUS	stop_codon	1009858	1009860	.	+	0	transcript_id "Ledus.S2G011100.t1"; gene_id "Ledus.S2G011100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7470.t1 is derived from g12141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3015873	3017290	.	+	.	Ledus.S5G024800
Ledus.S5	AUGUSTUS	transcript	3015873	3017290	.	+	.	transcript_id "Ledus.S5G024800.t1"; gene_id "Ledus.S5G024800"
Ledus.S5	AUGUSTUS	start_codon	3015873	3015875	.	+	0	transcript_id "Ledus.S5G024800.t1"; gene_id "Ledus.S5G024800"
Ledus.S5	AUGUSTUS	CDS	3015873	3017128	0.89	+	0	transcript_id "Ledus.S5G024800.t1"; gene_id "Ledus.S5G024800"
Ledus.S5	AUGUSTUS	exon	3015873	3017128	.	+	.	transcript_id "Ledus.S5G024800.t1"; gene_id "Ledus.S5G024800"
Ledus.S5	AUGUSTUS	intron	3017129	3017277	.	+	.	transcript_id "Ledus.S5G024800.t1"; gene_id "Ledus.S5G024800"
Ledus.S5	AUGUSTUS	CDS	3017278	3017290	0.97	+	1	transcript_id "Ledus.S5G024800.t1"; gene_id "Ledus.S5G024800"
Ledus.S5	AUGUSTUS	exon	3017278	3017290	.	+	.	transcript_id "Ledus.S5G024800.t1"; gene_id "Ledus.S5G024800"
Ledus.S5	AUGUSTUS	stop_codon	3017291	3017293	.	+	0	transcript_id "Ledus.S5G024800.t1"; gene_id "Ledus.S5G024800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8423.t1 is derived from g13095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11561959	11563773	.	-	.	Ledus.S5G120100
Ledus.S5	AUGUSTUS	transcript	11561959	11563773	.	-	.	transcript_id "Ledus.S5G120100.t1"; gene_id "Ledus.S5G120100"
Ledus.S5	AUGUSTUS	stop_codon	11561956	11561958	.	-	0	transcript_id "Ledus.S5G120100.t1"; gene_id "Ledus.S5G120100"
Ledus.S5	AUGUSTUS	CDS	11561959	11563773	1	-	0	transcript_id "Ledus.S5G120100.t1"; gene_id "Ledus.S5G120100"
Ledus.S5	AUGUSTUS	exon	11561959	11563773	.	-	.	transcript_id "Ledus.S5G120100.t1"; gene_id "Ledus.S5G120100"
Ledus.S5	AUGUSTUS	start_codon	11563771	11563773	.	-	0	transcript_id "Ledus.S5G120100.t1"; gene_id "Ledus.S5G120100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11342.t1 is derived from g4960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3689974	3690377	.	+	.	Ledus.S4G049800
Ledus.S4	AUGUSTUS	transcript	3689974	3690377	.	+	.	transcript_id "Ledus.S4G049800.t1"; gene_id "Ledus.S4G049800"
Ledus.S4	AUGUSTUS	start_codon	3689974	3689976	.	+	0	transcript_id "Ledus.S4G049800.t1"; gene_id "Ledus.S4G049800"
Ledus.S4	AUGUSTUS	CDS	3689974	3690070	0.63	+	0	transcript_id "Ledus.S4G049800.t1"; gene_id "Ledus.S4G049800"
Ledus.S4	AUGUSTUS	exon	3689974	3690070	.	+	.	transcript_id "Ledus.S4G049800.t1"; gene_id "Ledus.S4G049800"
Ledus.S4	AUGUSTUS	intron	3690071	3690144	.	+	.	transcript_id "Ledus.S4G049800.t1"; gene_id "Ledus.S4G049800"
Ledus.S4	AUGUSTUS	CDS	3690145	3690377	0.92	+	2	transcript_id "Ledus.S4G049800.t1"; gene_id "Ledus.S4G049800"
Ledus.S4	AUGUSTUS	exon	3690145	3690377	.	+	.	transcript_id "Ledus.S4G049800.t1"; gene_id "Ledus.S4G049800"
Ledus.S4	AUGUSTUS	stop_codon	3690378	3690380	.	+	0	transcript_id "Ledus.S4G049800.t1"; gene_id "Ledus.S4G049800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9845.t1 is derived from g10875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10489595	10490862	.	+	.	Ledus.S3G132200
Ledus.S3	AUGUSTUS	transcript	10489595	10490862	.	+	.	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	start_codon	10489595	10489597	.	+	0	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	CDS	10489595	10489683	0.38	+	0	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	exon	10489595	10489683	.	+	.	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	intron	10489684	10489965	.	+	.	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	CDS	10489966	10490084	0.5	+	1	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	exon	10489966	10490084	.	+	.	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	intron	10490085	10490260	.	+	.	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	CDS	10490261	10490314	0.96	+	2	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	exon	10490261	10490314	.	+	.	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	intron	10490315	10490722	.	+	.	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	CDS	10490723	10490862	1	+	2	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	exon	10490723	10490862	.	+	.	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
Ledus.S3	AUGUSTUS	stop_codon	10490863	10490865	.	+	0	transcript_id "Ledus.S3G132200.t1"; gene_id "Ledus.S3G132200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2823.t1 is derived from g257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3954299	3954499	.	+	.	Ledus.S1G024400
Ledus.S1	AUGUSTUS	transcript	3954299	3954499	.	+	.	transcript_id "Ledus.S1G024400.t1"; gene_id "Ledus.S1G024400"
Ledus.S1	AUGUSTUS	start_codon	3954299	3954301	.	+	0	transcript_id "Ledus.S1G024400.t1"; gene_id "Ledus.S1G024400"
Ledus.S1	AUGUSTUS	CDS	3954299	3954499	0.65	+	0	transcript_id "Ledus.S1G024400.t1"; gene_id "Ledus.S1G024400"
Ledus.S1	AUGUSTUS	exon	3954299	3954499	.	+	.	transcript_id "Ledus.S1G024400.t1"; gene_id "Ledus.S1G024400"
Ledus.S1	AUGUSTUS	stop_codon	3954500	3954502	.	+	0	transcript_id "Ledus.S1G024400.t1"; gene_id "Ledus.S1G024400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3378.t1 is derived from g813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7959647	7960733	.	+	.	Ledus.S1G079900
Ledus.S1	AUGUSTUS	transcript	7959647	7960733	.	+	.	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	start_codon	7959647	7959649	.	+	0	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	CDS	7959647	7959660	0.99	+	0	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	exon	7959647	7959660	.	+	.	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	intron	7959661	7959824	.	+	.	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	CDS	7959825	7959937	1	+	1	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	exon	7959825	7959937	.	+	.	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	intron	7959938	7960020	.	+	.	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	CDS	7960021	7960129	1	+	2	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	exon	7960021	7960129	.	+	.	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	intron	7960130	7960258	.	+	.	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	CDS	7960259	7960324	1	+	1	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	exon	7960259	7960324	.	+	.	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	intron	7960325	7960402	.	+	.	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	CDS	7960403	7960600	0.98	+	1	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	exon	7960403	7960600	.	+	.	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	intron	7960601	7960702	.	+	.	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	CDS	7960703	7960733	0.98	+	1	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	exon	7960703	7960733	.	+	.	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
Ledus.S1	AUGUSTUS	stop_codon	7960734	7960736	.	+	0	transcript_id "Ledus.S1G079900.t1"; gene_id "Ledus.S1G079900"
# This transcript jg11758.t1 is derived from g5376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6601577	6602329	.	-	.	Ledus.S4G091300
Ledus.S4	AUGUSTUS	transcript	6601577	6602329	.	-	.	transcript_id "Ledus.S4G091300.t1"; gene_id "Ledus.S4G091300"
Ledus.S4	AUGUSTUS	stop_codon	6601574	6601576	.	-	0	transcript_id "Ledus.S4G091300.t1"; gene_id "Ledus.S4G091300"
Ledus.S4	AUGUSTUS	CDS	6601577	6602329	0.81	-	0	transcript_id "Ledus.S4G091300.t1"; gene_id "Ledus.S4G091300"
Ledus.S4	AUGUSTUS	exon	6601577	6602329	.	-	.	transcript_id "Ledus.S4G091300.t1"; gene_id "Ledus.S4G091300"
Ledus.S4	AUGUSTUS	start_codon	6602327	6602329	.	-	0	transcript_id "Ledus.S4G091300.t1"; gene_id "Ledus.S4G091300"
Ledus.S4	AUGUSTUS	transcript	6601577	6602011	.	-	.	transcript_id "Ledus.S4G091300.t2"; gene_id "Ledus.S4G091300"
Ledus.S4	AUGUSTUS	stop_codon	6601574	6601576	.	-	0	transcript_id "Ledus.S4G091300.t2"; gene_id "Ledus.S4G091300"
Ledus.S4	AUGUSTUS	CDS	6601577	6602011	0.66	-	0	transcript_id "Ledus.S4G091300.t2"; gene_id "Ledus.S4G091300"
Ledus.S4	AUGUSTUS	exon	6601577	6602011	.	-	.	transcript_id "Ledus.S4G091300.t2"; gene_id "Ledus.S4G091300"
Ledus.S4	AUGUSTUS	start_codon	6602009	6602011	.	-	0	transcript_id "Ledus.S4G091300.t2"; gene_id "Ledus.S4G091300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10443.t1 is derived from g11473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15194548	15195544	.	-	.	Ledus.S3G192000
Ledus.S3	AUGUSTUS	transcript	15194548	15195544	.	-	.	transcript_id "Ledus.S3G192000.t1"; gene_id "Ledus.S3G192000"
Ledus.S3	AUGUSTUS	stop_codon	15194545	15194547	.	-	0	transcript_id "Ledus.S3G192000.t1"; gene_id "Ledus.S3G192000"
Ledus.S3	AUGUSTUS	CDS	15194548	15194565	1	-	0	transcript_id "Ledus.S3G192000.t1"; gene_id "Ledus.S3G192000"
Ledus.S3	AUGUSTUS	exon	15194548	15194565	.	-	.	transcript_id "Ledus.S3G192000.t1"; gene_id "Ledus.S3G192000"
Ledus.S3	AUGUSTUS	intron	15194566	15194707	.	-	.	transcript_id "Ledus.S3G192000.t1"; gene_id "Ledus.S3G192000"
Ledus.S3	AUGUSTUS	CDS	15194708	15194749	1	-	0	transcript_id "Ledus.S3G192000.t1"; gene_id "Ledus.S3G192000"
Ledus.S3	AUGUSTUS	exon	15194708	15194749	.	-	.	transcript_id "Ledus.S3G192000.t1"; gene_id "Ledus.S3G192000"
Ledus.S3	AUGUSTUS	intron	15194750	15195364	.	-	.	transcript_id "Ledus.S3G192000.t1"; gene_id "Ledus.S3G192000"
Ledus.S3	AUGUSTUS	CDS	15195365	15195544	1	-	0	transcript_id "Ledus.S3G192000.t1"; gene_id "Ledus.S3G192000"
Ledus.S3	AUGUSTUS	exon	15195365	15195544	.	-	.	transcript_id "Ledus.S3G192000.t1"; gene_id "Ledus.S3G192000"
Ledus.S3	AUGUSTUS	start_codon	15195542	15195544	.	-	0	transcript_id "Ledus.S3G192000.t1"; gene_id "Ledus.S3G192000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4843.t1 is derived from g2281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20092413	20093925	.	+	.	Ledus.S1G226400
Ledus.S1	AUGUSTUS	transcript	20092413	20093925	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	start_codon	20092413	20092415	.	+	0	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	CDS	20092413	20092539	0.68	+	0	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	exon	20092413	20092539	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	intron	20092540	20092627	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	CDS	20092628	20092813	1	+	2	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	exon	20092628	20092813	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	intron	20092814	20092965	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	CDS	20092966	20093062	1	+	2	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	exon	20092966	20093062	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	intron	20093063	20093141	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	CDS	20093142	20093164	0.81	+	1	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	exon	20093142	20093164	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	intron	20093165	20093255	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	CDS	20093256	20093395	0.75	+	2	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	exon	20093256	20093395	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	intron	20093396	20093472	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	CDS	20093473	20093722	1	+	0	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	exon	20093473	20093722	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	intron	20093723	20093794	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	CDS	20093795	20093925	1	+	2	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	exon	20093795	20093925	.	+	.	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
Ledus.S1	AUGUSTUS	stop_codon	20093926	20093928	.	+	0	transcript_id "Ledus.S1G226400.t1"; gene_id "Ledus.S1G226400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4926.t1 is derived from g2364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20667581	20669398	.	+	.	Ledus.S1G234700
Ledus.S1	AUGUSTUS	transcript	20667581	20669398	.	+	.	transcript_id "Ledus.S1G234700.t1"; gene_id "Ledus.S1G234700"
Ledus.S1	AUGUSTUS	start_codon	20667581	20667583	.	+	0	transcript_id "Ledus.S1G234700.t1"; gene_id "Ledus.S1G234700"
Ledus.S1	AUGUSTUS	CDS	20667581	20667650	0.99	+	0	transcript_id "Ledus.S1G234700.t1"; gene_id "Ledus.S1G234700"
Ledus.S1	AUGUSTUS	exon	20667581	20667650	.	+	.	transcript_id "Ledus.S1G234700.t1"; gene_id "Ledus.S1G234700"
Ledus.S1	AUGUSTUS	intron	20667651	20667742	.	+	.	transcript_id "Ledus.S1G234700.t1"; gene_id "Ledus.S1G234700"
Ledus.S1	AUGUSTUS	CDS	20667743	20669296	0.98	+	2	transcript_id "Ledus.S1G234700.t1"; gene_id "Ledus.S1G234700"
Ledus.S1	AUGUSTUS	exon	20667743	20669296	.	+	.	transcript_id "Ledus.S1G234700.t1"; gene_id "Ledus.S1G234700"
Ledus.S1	AUGUSTUS	intron	20669297	20669375	.	+	.	transcript_id "Ledus.S1G234700.t1"; gene_id "Ledus.S1G234700"
Ledus.S1	AUGUSTUS	CDS	20669376	20669398	1	+	2	transcript_id "Ledus.S1G234700.t1"; gene_id "Ledus.S1G234700"
Ledus.S1	AUGUSTUS	exon	20669376	20669398	.	+	.	transcript_id "Ledus.S1G234700.t1"; gene_id "Ledus.S1G234700"
Ledus.S1	AUGUSTUS	stop_codon	20669399	20669401	.	+	0	transcript_id "Ledus.S1G234700.t1"; gene_id "Ledus.S1G234700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg335.t1 is derived from g7196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1799187	1800677	.	-	.	Ledus.S2G021700
Ledus.S2	AUGUSTUS	transcript	1799187	1800677	.	-	.	transcript_id "Ledus.S2G021700.t1"; gene_id "Ledus.S2G021700"
Ledus.S2	AUGUSTUS	stop_codon	1799184	1799186	.	-	0	transcript_id "Ledus.S2G021700.t1"; gene_id "Ledus.S2G021700"
Ledus.S2	AUGUSTUS	CDS	1799187	1799368	0.96	-	2	transcript_id "Ledus.S2G021700.t1"; gene_id "Ledus.S2G021700"
Ledus.S2	AUGUSTUS	exon	1799187	1799368	.	-	.	transcript_id "Ledus.S2G021700.t1"; gene_id "Ledus.S2G021700"
Ledus.S2	AUGUSTUS	intron	1799369	1799454	.	-	.	transcript_id "Ledus.S2G021700.t1"; gene_id "Ledus.S2G021700"
Ledus.S2	AUGUSTUS	CDS	1799455	1799905	1	-	0	transcript_id "Ledus.S2G021700.t1"; gene_id "Ledus.S2G021700"
Ledus.S2	AUGUSTUS	exon	1799455	1799905	.	-	.	transcript_id "Ledus.S2G021700.t1"; gene_id "Ledus.S2G021700"
Ledus.S2	AUGUSTUS	intron	1799906	1800668	.	-	.	transcript_id "Ledus.S2G021700.t1"; gene_id "Ledus.S2G021700"
Ledus.S2	AUGUSTUS	CDS	1800669	1800677	0.82	-	0	transcript_id "Ledus.S2G021700.t1"; gene_id "Ledus.S2G021700"
Ledus.S2	AUGUSTUS	exon	1800669	1800677	.	-	.	transcript_id "Ledus.S2G021700.t1"; gene_id "Ledus.S2G021700"
Ledus.S2	AUGUSTUS	start_codon	1800675	1800677	.	-	0	transcript_id "Ledus.S2G021700.t1"; gene_id "Ledus.S2G021700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1743.t1 is derived from g8605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12296679	12299364	.	-	.	Ledus.S2G162500
Ledus.S2	AUGUSTUS	transcript	12296679	12299364	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	stop_codon	12296676	12296678	.	-	0	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	CDS	12296679	12296774	0.99	-	0	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	exon	12296679	12296774	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	intron	12296775	12296870	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	CDS	12296871	12297040	1	-	2	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	exon	12296871	12297040	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	intron	12297041	12297136	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	CDS	12297137	12297257	1	-	0	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	exon	12297137	12297257	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	intron	12297258	12297351	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	CDS	12297352	12297636	0.83	-	0	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	exon	12297352	12297636	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	intron	12297637	12297751	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	CDS	12297752	12298024	0.97	-	0	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	exon	12297752	12298024	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	intron	12298025	12298097	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	CDS	12298098	12298418	1	-	0	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	exon	12298098	12298418	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	intron	12298419	12298495	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	CDS	12298496	12298768	1	-	0	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	exon	12298496	12298768	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	intron	12298769	12298845	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	CDS	12298846	12298962	1	-	0	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	exon	12298846	12298962	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	intron	12298963	12299052	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	CDS	12299053	12299364	1	-	0	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	exon	12299053	12299364	.	-	.	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
Ledus.S2	AUGUSTUS	start_codon	12299362	12299364	.	-	0	transcript_id "Ledus.S2G162500.t1"; gene_id "Ledus.S2G162500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2975.t1 is derived from g410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5023931	5030385	.	-	.	Ledus.S1G039600
Ledus.S1	AUGUSTUS	transcript	5023931	5030385	.	-	.	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	stop_codon	5023928	5023930	.	-	0	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	CDS	5023931	5024277	0.79	-	2	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	exon	5023931	5024277	.	-	.	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	intron	5024278	5024381	.	-	.	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	CDS	5024382	5024590	0.06	-	1	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	exon	5024382	5024590	.	-	.	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	intron	5024591	5026127	.	-	.	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	CDS	5026128	5026192	1	-	0	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	exon	5026128	5026192	.	-	.	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	intron	5026193	5030112	.	-	.	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	CDS	5030113	5030385	0.42	-	0	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	exon	5030113	5030385	.	-	.	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
Ledus.S1	AUGUSTUS	start_codon	5030383	5030385	.	-	0	transcript_id "Ledus.S1G039600.t1"; gene_id "Ledus.S1G039600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8422.t1 is derived from g13094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11559048	11561029	.	-	.	Ledus.S5G120000
Ledus.S5	AUGUSTUS	transcript	11559048	11561029	.	-	.	transcript_id "Ledus.S5G120000.t1"; gene_id "Ledus.S5G120000"
Ledus.S5	AUGUSTUS	stop_codon	11559045	11559047	.	-	0	transcript_id "Ledus.S5G120000.t1"; gene_id "Ledus.S5G120000"
Ledus.S5	AUGUSTUS	CDS	11559048	11559887	1	-	0	transcript_id "Ledus.S5G120000.t1"; gene_id "Ledus.S5G120000"
Ledus.S5	AUGUSTUS	exon	11559048	11559887	.	-	.	transcript_id "Ledus.S5G120000.t1"; gene_id "Ledus.S5G120000"
Ledus.S5	AUGUSTUS	intron	11559888	11560084	.	-	.	transcript_id "Ledus.S5G120000.t1"; gene_id "Ledus.S5G120000"
Ledus.S5	AUGUSTUS	CDS	11560085	11561029	0.51	-	0	transcript_id "Ledus.S5G120000.t1"; gene_id "Ledus.S5G120000"
Ledus.S5	AUGUSTUS	exon	11560085	11561029	.	-	.	transcript_id "Ledus.S5G120000.t1"; gene_id "Ledus.S5G120000"
Ledus.S5	AUGUSTUS	start_codon	11561027	11561029	.	-	0	transcript_id "Ledus.S5G120000.t1"; gene_id "Ledus.S5G120000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6742.t1 is derived from g4185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33703406	33704942	.	+	.	Ledus.S1G416300
Ledus.S1	AUGUSTUS	transcript	33703406	33704942	.	+	.	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	start_codon	33703406	33703408	.	+	0	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	CDS	33703406	33703723	0.6	+	0	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	exon	33703406	33703723	.	+	.	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	intron	33703724	33703796	.	+	.	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	CDS	33703797	33703925	0.99	+	0	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	exon	33703797	33703925	.	+	.	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	intron	33703926	33704018	.	+	.	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	CDS	33704019	33704291	0.86	+	0	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	exon	33704019	33704291	.	+	.	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	intron	33704292	33704405	.	+	.	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	CDS	33704406	33704942	1	+	0	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	exon	33704406	33704942	.	+	.	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
Ledus.S1	AUGUSTUS	stop_codon	33704943	33704945	.	+	0	transcript_id "Ledus.S1G416300.t1"; gene_id "Ledus.S1G416300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg947.t1 is derived from g7808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6257113	6260319	.	+	.	Ledus.S2G082900
Ledus.S2	AUGUSTUS	transcript	6257113	6260319	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	start_codon	6257113	6257115	.	+	0	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	CDS	6257113	6257528	0.63	+	0	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	exon	6257113	6257528	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	intron	6257529	6257659	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	CDS	6257660	6257747	1	+	1	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	exon	6257660	6257747	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	intron	6257748	6257860	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	CDS	6257861	6258127	1	+	0	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	exon	6257861	6258127	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	intron	6258128	6258229	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	CDS	6258230	6258335	1	+	0	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	exon	6258230	6258335	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	intron	6258336	6258431	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	CDS	6258432	6258543	1	+	2	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	exon	6258432	6258543	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	intron	6258544	6258634	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	CDS	6258635	6258767	1	+	1	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	exon	6258635	6258767	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	intron	6258768	6258840	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	CDS	6258841	6259028	1	+	0	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	exon	6258841	6259028	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	intron	6259029	6259113	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	CDS	6259114	6259455	0.75	+	1	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	exon	6259114	6259455	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	intron	6259456	6259534	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	CDS	6259535	6259643	1	+	1	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	exon	6259535	6259643	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	intron	6259644	6259748	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	CDS	6259749	6259937	0.98	+	0	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	exon	6259749	6259937	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	intron	6259938	6260049	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	CDS	6260050	6260142	0.99	+	0	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	exon	6260050	6260142	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	intron	6260143	6260238	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	CDS	6260239	6260319	1	+	0	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	exon	6260239	6260319	.	+	.	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
Ledus.S2	AUGUSTUS	stop_codon	6260320	6260322	.	+	0	transcript_id "Ledus.S2G082900.t1"; gene_id "Ledus.S2G082900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6866.t1 is derived from g4310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34822999	34824120	.	-	.	Ledus.S1G428700
Ledus.S1	AUGUSTUS	transcript	34822999	34824120	.	-	.	transcript_id "Ledus.S1G428700.t1"; gene_id "Ledus.S1G428700"
Ledus.S1	AUGUSTUS	stop_codon	34822996	34822998	.	-	0	transcript_id "Ledus.S1G428700.t1"; gene_id "Ledus.S1G428700"
Ledus.S1	AUGUSTUS	CDS	34822999	34824120	0.29	-	0	transcript_id "Ledus.S1G428700.t1"; gene_id "Ledus.S1G428700"
Ledus.S1	AUGUSTUS	exon	34822999	34824120	.	-	.	transcript_id "Ledus.S1G428700.t1"; gene_id "Ledus.S1G428700"
Ledus.S1	AUGUSTUS	start_codon	34824118	34824120	.	-	0	transcript_id "Ledus.S1G428700.t1"; gene_id "Ledus.S1G428700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2482.t1 is derived from g9345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18389580	18392768	.	+	.	Ledus.S2G236400
Ledus.S2	AUGUSTUS	transcript	18389580	18392768	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	start_codon	18389580	18389582	.	+	0	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	CDS	18389580	18390188	0.76	+	0	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	exon	18389580	18390188	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	intron	18390189	18390288	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	CDS	18390289	18390713	1	+	0	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	exon	18390289	18390713	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	intron	18390714	18390835	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	CDS	18390836	18390913	1	+	1	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	exon	18390836	18390913	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	intron	18390914	18390997	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	CDS	18390998	18391100	1	+	1	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	exon	18390998	18391100	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	intron	18391101	18391201	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	CDS	18391202	18391290	0.97	+	0	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	exon	18391202	18391290	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	intron	18391291	18391410	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	CDS	18391411	18391522	0.98	+	1	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	exon	18391411	18391522	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	intron	18391523	18391623	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	CDS	18391624	18391677	1	+	0	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	exon	18391624	18391677	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	intron	18391678	18391834	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	CDS	18391835	18391883	1	+	0	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	exon	18391835	18391883	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	intron	18391884	18391988	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	CDS	18391989	18392092	1	+	2	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	exon	18391989	18392092	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	intron	18392093	18392196	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	CDS	18392197	18392312	1	+	0	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	exon	18392197	18392312	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	intron	18392313	18392407	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	CDS	18392408	18392768	0.97	+	1	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	exon	18392408	18392768	.	+	.	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
Ledus.S2	AUGUSTUS	stop_codon	18392769	18392771	.	+	0	transcript_id "Ledus.S2G236400.t1"; gene_id "Ledus.S2G236400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3756.t1 is derived from g1192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11685678	11686247	.	+	.	Ledus.S1G117700
Ledus.S1	AUGUSTUS	transcript	11685678	11686247	.	+	.	transcript_id "Ledus.S1G117700.t1"; gene_id "Ledus.S1G117700"
Ledus.S1	AUGUSTUS	start_codon	11685678	11685680	.	+	0	transcript_id "Ledus.S1G117700.t1"; gene_id "Ledus.S1G117700"
Ledus.S1	AUGUSTUS	CDS	11685678	11686247	0.51	+	0	transcript_id "Ledus.S1G117700.t1"; gene_id "Ledus.S1G117700"
Ledus.S1	AUGUSTUS	exon	11685678	11686247	.	+	.	transcript_id "Ledus.S1G117700.t1"; gene_id "Ledus.S1G117700"
Ledus.S1	AUGUSTUS	stop_codon	11686248	11686250	.	+	0	transcript_id "Ledus.S1G117700.t1"; gene_id "Ledus.S1G117700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg12067.t1 is derived from g5686.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9290921	9299554	.	+	.	Ledus.S4G122300
Ledus.S4	AUGUSTUS	transcript	9290921	9299554	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	start_codon	9290921	9290923	.	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9290921	9291337	0.4	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9290921	9291337	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9291338	9291536	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9291537	9291623	1	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9291537	9291623	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9291624	9291746	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9291747	9291880	1	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9291747	9291880	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9291881	9291974	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9291975	9292103	0.99	+	1	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9291975	9292103	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9292104	9292220	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9292221	9292326	0.99	+	1	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9292221	9292326	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9292327	9292440	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9292441	9292518	0.99	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9292441	9292518	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9292519	9292592	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9292593	9292714	0.95	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9292593	9292714	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9292715	9292947	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9292948	9293068	0.96	+	1	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9292948	9293068	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9293069	9293261	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9293262	9293317	0.98	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9293262	9293317	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9293318	9293628	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9293629	9293692	0.68	+	1	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9293629	9293692	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9293693	9293908	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9293909	9294038	0.61	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9293909	9294038	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9294039	9294137	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9294138	9294169	0.88	+	2	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9294138	9294169	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9294170	9294342	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9294343	9294368	0.82	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9294343	9294368	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9294369	9294466	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9294467	9294527	0.92	+	1	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9294467	9294527	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9294528	9295131	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9295132	9295218	1	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9295132	9295218	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9295219	9295396	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9295397	9295486	1	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9295397	9295486	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9295487	9295665	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9295666	9295752	0.98	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9295666	9295752	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9295753	9295873	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9295874	9296068	0.94	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9295874	9296068	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9296069	9296194	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9296195	9298324	1	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9296195	9298324	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9298325	9298535	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9298536	9298682	1	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9298536	9298682	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9298683	9298787	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9298788	9299242	0.92	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9298788	9299242	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9299243	9299406	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9299407	9299554	0.87	+	1	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9299407	9299554	.	+	.	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	stop_codon	9299555	9299557	.	+	0	transcript_id "Ledus.S4G122300.t1"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	transcript	9290921	9299554	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	start_codon	9290921	9290923	.	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9290921	9291337	0.38	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9290921	9291337	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9291338	9291536	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9291537	9291623	1	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9291537	9291623	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9291624	9291746	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9291747	9291880	1	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9291747	9291880	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9291881	9291974	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9291975	9292103	1	+	1	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9291975	9292103	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9292104	9292220	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9292221	9292326	1	+	1	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9292221	9292326	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9292327	9292440	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9292441	9292518	1	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9292441	9292518	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9292519	9292592	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9292593	9292714	0.93	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9292593	9292714	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9292715	9292947	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9292948	9293068	0.92	+	1	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9292948	9293068	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9293069	9293261	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9293262	9293317	0.95	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9293262	9293317	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9293318	9293628	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9293629	9293669	0.29	+	1	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9293629	9293669	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9293670	9293908	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9293909	9293994	0.4	+	2	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9293909	9293994	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9293995	9294137	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9294138	9294169	0.78	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9294138	9294169	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9294170	9294342	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9294343	9294375	0.78	+	1	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9294343	9294375	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9294376	9294466	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9294467	9294527	0.88	+	1	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9294467	9294527	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9294528	9295131	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9295132	9295218	1	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9295132	9295218	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9295219	9295396	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9295397	9295486	1	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9295397	9295486	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9295487	9295665	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9295666	9295752	0.97	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9295666	9295752	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9295753	9295873	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9295874	9296068	0.95	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9295874	9296068	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9296069	9296194	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9296195	9298324	0.99	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9296195	9298324	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9298325	9298535	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9298536	9298682	1	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9298536	9298682	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9298683	9298787	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9298788	9299242	0.93	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9298788	9299242	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9299243	9299406	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9299407	9299554	0.83	+	1	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9299407	9299554	.	+	.	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	stop_codon	9299555	9299557	.	+	0	transcript_id "Ledus.S4G122300.t2"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	transcript	9290921	9299554	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	start_codon	9290921	9290923	.	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9290921	9291337	0.47	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9290921	9291337	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9291338	9291536	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9291537	9291623	0.99	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9291537	9291623	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9291624	9291746	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9291747	9291880	1	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9291747	9291880	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9291881	9291974	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9291975	9292103	1	+	1	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9291975	9292103	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9292104	9292220	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9292221	9292326	1	+	1	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9292221	9292326	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9292327	9292440	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9292441	9292518	1	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9292441	9292518	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9292519	9292592	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9292593	9292714	0.94	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9292593	9292714	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9292715	9292947	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9292948	9293068	0.96	+	1	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9292948	9293068	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9293069	9293261	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9293262	9293317	0.99	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9293262	9293317	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9293318	9293628	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9293629	9293692	0.41	+	1	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9293629	9293692	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9293693	9293908	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9293909	9294038	0.33	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9293909	9294038	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9294039	9294137	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9294138	9294169	0.88	+	2	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9294138	9294169	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9294170	9294290	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9294291	9294368	0.53	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9294291	9294368	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9294369	9294476	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9294477	9294527	0.34	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9294477	9294527	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9294528	9295131	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9295132	9295218	1	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9295132	9295218	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9295219	9295396	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9295397	9295486	1	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9295397	9295486	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9295487	9295665	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9295666	9295752	0.98	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9295666	9295752	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9295753	9295873	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9295874	9296068	0.99	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9295874	9296068	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9296069	9296194	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9296195	9298324	0.97	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9296195	9298324	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9298325	9298535	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9298536	9298682	1	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9298536	9298682	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9298683	9298787	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9298788	9299242	0.94	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9298788	9299242	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	intron	9299243	9299406	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	CDS	9299407	9299554	0.76	+	1	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	exon	9299407	9299554	.	+	.	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
Ledus.S4	AUGUSTUS	stop_codon	9299555	9299557	.	+	0	transcript_id "Ledus.S4G122300.t3"; gene_id "Ledus.S4G122300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg686.t1 is derived from g7547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4183094	4186062	.	-	.	Ledus.S2G056800
Ledus.S2	AUGUSTUS	transcript	4183094	4186062	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	stop_codon	4183091	4183093	.	-	0	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	CDS	4183094	4183258	0.59	-	0	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	exon	4183094	4183258	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	intron	4183259	4183392	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	CDS	4183393	4183506	0.96	-	0	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	exon	4183393	4183506	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	intron	4183507	4183623	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	CDS	4183624	4183725	0.94	-	0	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	exon	4183624	4183725	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	intron	4183726	4183910	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	CDS	4183911	4183995	1	-	1	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	exon	4183911	4183995	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	intron	4183996	4184083	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	CDS	4184084	4184268	1	-	0	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	exon	4184084	4184268	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	intron	4184269	4184360	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	CDS	4184361	4184577	1	-	1	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	exon	4184361	4184577	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	intron	4184578	4184659	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	CDS	4184660	4184790	1	-	0	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	exon	4184660	4184790	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	intron	4184791	4184880	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	CDS	4184881	4185107	1	-	2	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	exon	4184881	4185107	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	intron	4185108	4185185	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	CDS	4185186	4185270	0.78	-	0	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	exon	4185186	4185270	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	intron	4185271	4185535	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	CDS	4185536	4185613	1	-	0	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	exon	4185536	4185613	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	intron	4185614	4185697	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	CDS	4185698	4185890	0.83	-	1	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	exon	4185698	4185890	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	intron	4185891	4185997	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	CDS	4185998	4186062	0.68	-	0	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	exon	4185998	4186062	.	-	.	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
Ledus.S2	AUGUSTUS	start_codon	4186060	4186062	.	-	0	transcript_id "Ledus.S2G056800.t1"; gene_id "Ledus.S2G056800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3515.t1 is derived from g950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8983199	8992451	.	-	.	Ledus.S1G093600
Ledus.S1	AUGUSTUS	transcript	8983199	8992451	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	stop_codon	8983196	8983198	.	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8983199	8983277	1	-	1	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8983199	8983277	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8983278	8983407	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8983408	8983520	1	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8983408	8983520	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8983521	8983652	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8983653	8983727	1	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8983653	8983727	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8983728	8983905	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8983906	8983992	1	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8983906	8983992	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8983993	8984128	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8984129	8984218	1	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8984129	8984218	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8984219	8984397	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8984398	8984448	1	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8984398	8984448	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8984449	8984535	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8984536	8984610	0.94	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8984536	8984610	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8984611	8984852	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8984853	8984949	0.8	-	1	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8984853	8984949	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8984950	8985067	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8985068	8985135	1	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8985068	8985135	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8985136	8985217	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8985218	8985328	1	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8985218	8985328	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8985329	8985449	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8985450	8985595	1	-	2	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8985450	8985595	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8985596	8985722	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8985723	8985847	1	-	1	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8985723	8985847	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8985848	8986018	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8986019	8986118	1	-	2	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8986019	8986118	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8986119	8986226	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8986227	8986332	1	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8986227	8986332	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8986333	8986526	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8986527	8986668	1	-	1	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8986527	8986668	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8986669	8986769	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8986770	8986856	1	-	1	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8986770	8986856	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8986857	8986950	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8986951	8987033	1	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8986951	8987033	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8987034	8987146	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8987147	8987215	0.95	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8987147	8987215	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8987216	8987309	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8987310	8987378	1	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8987310	8987378	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8987379	8987469	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8987470	8987598	1	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8987470	8987598	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8987599	8987768	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8987769	8987994	1	-	1	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8987769	8987994	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8987995	8988165	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8988166	8988221	1	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8988166	8988221	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8988222	8988368	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8988369	8989627	0.99	-	2	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8988369	8989627	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8989628	8989869	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8989870	8990364	0.98	-	2	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8989870	8990364	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	intron	8990365	8990581	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	CDS	8990582	8992451	0.86	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	exon	8990582	8992451	.	-	.	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
Ledus.S1	AUGUSTUS	start_codon	8992449	8992451	.	-	0	transcript_id "Ledus.S1G093600.t1"; gene_id "Ledus.S1G093600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg509.t1 is derived from g7370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2995085	2997043	.	+	.	Ledus.S2G039100
Ledus.S2	AUGUSTUS	transcript	2995085	2997043	.	+	.	transcript_id "Ledus.S2G039100.t1"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	start_codon	2995085	2995087	.	+	0	transcript_id "Ledus.S2G039100.t1"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	CDS	2995085	2997043	0.99	+	0	transcript_id "Ledus.S2G039100.t1"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	exon	2995085	2997043	.	+	.	transcript_id "Ledus.S2G039100.t1"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	stop_codon	2997044	2997046	.	+	0	transcript_id "Ledus.S2G039100.t1"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	transcript	2995550	2997043	.	+	.	transcript_id "Ledus.S2G039100.t2"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	start_codon	2995550	2995552	.	+	0	transcript_id "Ledus.S2G039100.t2"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	CDS	2995550	2997043	0.86	+	0	transcript_id "Ledus.S2G039100.t2"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	exon	2995550	2997043	.	+	.	transcript_id "Ledus.S2G039100.t2"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	stop_codon	2997044	2997046	.	+	0	transcript_id "Ledus.S2G039100.t2"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	transcript	2995361	2997043	.	+	.	transcript_id "Ledus.S2G039100.t3"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	start_codon	2995361	2995363	.	+	0	transcript_id "Ledus.S2G039100.t3"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	CDS	2995361	2997043	0.63	+	0	transcript_id "Ledus.S2G039100.t3"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	exon	2995361	2997043	.	+	.	transcript_id "Ledus.S2G039100.t3"; gene_id "Ledus.S2G039100"
Ledus.S2	AUGUSTUS	stop_codon	2997044	2997046	.	+	0	transcript_id "Ledus.S2G039100.t3"; gene_id "Ledus.S2G039100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg129.t1 is derived from g6990.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	130297	131955	.	-	.	Ledus.S2G001100
Ledus.S2	AUGUSTUS	transcript	130297	131955	.	-	.	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	stop_codon	130294	130296	.	-	0	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	CDS	130297	130464	0.99	-	0	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	exon	130297	130464	.	-	.	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	intron	130465	130602	.	-	.	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	CDS	130603	130770	0.99	-	0	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	exon	130603	130770	.	-	.	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	intron	130771	130881	.	-	.	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	CDS	130882	131118	0.96	-	0	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	exon	130882	131118	.	-	.	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	intron	131119	131258	.	-	.	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	CDS	131259	131575	1	-	2	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	exon	131259	131575	.	-	.	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	intron	131576	131666	.	-	.	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	CDS	131667	131955	0.65	-	0	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	exon	131667	131955	.	-	.	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
Ledus.S2	AUGUSTUS	start_codon	131953	131955	.	-	0	transcript_id "Ledus.S2G001100.t1"; gene_id "Ledus.S2G001100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11155.t1 is derived from g4773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2211266	2212639	.	+	.	Ledus.S4G031100
Ledus.S4	AUGUSTUS	transcript	2211266	2212639	.	+	.	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	start_codon	2211266	2211268	.	+	0	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	CDS	2211266	2211503	1	+	0	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	exon	2211266	2211503	.	+	.	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	intron	2211504	2211585	.	+	.	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	CDS	2211586	2211974	0.99	+	2	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	exon	2211586	2211974	.	+	.	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	intron	2211975	2212051	.	+	.	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	CDS	2212052	2212328	0.98	+	0	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	exon	2212052	2212328	.	+	.	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	intron	2212329	2212400	.	+	.	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	CDS	2212401	2212639	0.98	+	2	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	exon	2212401	2212639	.	+	.	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
Ledus.S4	AUGUSTUS	stop_codon	2212640	2212642	.	+	0	transcript_id "Ledus.S4G031100.t1"; gene_id "Ledus.S4G031100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2900.t1 is derived from g335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4475104	4475313	.	+	.	Ledus.S1G032100
Ledus.S1	AUGUSTUS	transcript	4475104	4475313	.	+	.	transcript_id "Ledus.S1G032100.t1"; gene_id "Ledus.S1G032100"
Ledus.S1	AUGUSTUS	start_codon	4475104	4475106	.	+	0	transcript_id "Ledus.S1G032100.t1"; gene_id "Ledus.S1G032100"
Ledus.S1	AUGUSTUS	CDS	4475104	4475313	0.54	+	0	transcript_id "Ledus.S1G032100.t1"; gene_id "Ledus.S1G032100"
Ledus.S1	AUGUSTUS	exon	4475104	4475313	.	+	.	transcript_id "Ledus.S1G032100.t1"; gene_id "Ledus.S1G032100"
Ledus.S1	AUGUSTUS	stop_codon	4475314	4475316	.	+	0	transcript_id "Ledus.S1G032100.t1"; gene_id "Ledus.S1G032100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6618.t1 is derived from g4061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32751377	32753437	.	+	.	Ledus.S1G403900
Ledus.S1	AUGUSTUS	transcript	32751377	32753437	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	start_codon	32751377	32751379	.	+	0	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	CDS	32751377	32751692	0.21	+	0	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	exon	32751377	32751692	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	intron	32751693	32751815	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	CDS	32751816	32751915	0.89	+	2	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	exon	32751816	32751915	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	intron	32751916	32752054	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	CDS	32752055	32752169	1	+	1	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	exon	32752055	32752169	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	intron	32752170	32752298	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	CDS	32752299	32752420	1	+	0	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	exon	32752299	32752420	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	intron	32752421	32752609	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	CDS	32752610	32752796	1	+	1	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	exon	32752610	32752796	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	intron	32752797	32752920	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	CDS	32752921	32753067	1	+	0	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	exon	32752921	32753067	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	intron	32753068	32753155	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	CDS	32753156	32753437	0.86	+	0	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	exon	32753156	32753437	.	+	.	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
Ledus.S1	AUGUSTUS	stop_codon	32753438	32753440	.	+	0	transcript_id "Ledus.S1G403900.t1"; gene_id "Ledus.S1G403900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9331.t1 is derived from g10361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6164336	6166789	.	+	.	Ledus.S3G080800
Ledus.S3	AUGUSTUS	transcript	6164336	6166789	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	start_codon	6164336	6164338	.	+	0	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	CDS	6164336	6164499	0.38	+	0	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	exon	6164336	6164499	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	intron	6164500	6164809	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	CDS	6164810	6164877	0.98	+	1	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	exon	6164810	6164877	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	intron	6164878	6165604	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	CDS	6165605	6165747	1	+	2	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	exon	6165605	6165747	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	intron	6165748	6165832	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	CDS	6165833	6166057	1	+	0	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	exon	6165833	6166057	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	intron	6166058	6166148	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	CDS	6166149	6166343	1	+	0	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	exon	6166149	6166343	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	intron	6166344	6166432	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	CDS	6166433	6166494	1	+	0	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	exon	6166433	6166494	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	intron	6166495	6166593	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	CDS	6166594	6166789	1	+	1	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	exon	6166594	6166789	.	+	.	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
Ledus.S3	AUGUSTUS	stop_codon	6166790	6166792	.	+	0	transcript_id "Ledus.S3G080800.t1"; gene_id "Ledus.S3G080800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3008.t1 is derived from g443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5268609	5269720	.	-	.	Ledus.S1G042900
Ledus.S1	AUGUSTUS	transcript	5268609	5269720	.	-	.	transcript_id "Ledus.S1G042900.t1"; gene_id "Ledus.S1G042900"
Ledus.S1	AUGUSTUS	stop_codon	5268606	5268608	.	-	0	transcript_id "Ledus.S1G042900.t1"; gene_id "Ledus.S1G042900"
Ledus.S1	AUGUSTUS	CDS	5268609	5268838	0.69	-	2	transcript_id "Ledus.S1G042900.t1"; gene_id "Ledus.S1G042900"
Ledus.S1	AUGUSTUS	exon	5268609	5268838	.	-	.	transcript_id "Ledus.S1G042900.t1"; gene_id "Ledus.S1G042900"
Ledus.S1	AUGUSTUS	intron	5268839	5268951	.	-	.	transcript_id "Ledus.S1G042900.t1"; gene_id "Ledus.S1G042900"
Ledus.S1	AUGUSTUS	CDS	5268952	5269199	1	-	1	transcript_id "Ledus.S1G042900.t1"; gene_id "Ledus.S1G042900"
Ledus.S1	AUGUSTUS	exon	5268952	5269199	.	-	.	transcript_id "Ledus.S1G042900.t1"; gene_id "Ledus.S1G042900"
Ledus.S1	AUGUSTUS	intron	5269200	5269280	.	-	.	transcript_id "Ledus.S1G042900.t1"; gene_id "Ledus.S1G042900"
Ledus.S1	AUGUSTUS	CDS	5269281	5269720	0.98	-	0	transcript_id "Ledus.S1G042900.t1"; gene_id "Ledus.S1G042900"
Ledus.S1	AUGUSTUS	exon	5269281	5269720	.	-	.	transcript_id "Ledus.S1G042900.t1"; gene_id "Ledus.S1G042900"
Ledus.S1	AUGUSTUS	start_codon	5269718	5269720	.	-	0	transcript_id "Ledus.S1G042900.t1"; gene_id "Ledus.S1G042900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6253.t1 is derived from g3696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29911027	29913224	.	+	.	Ledus.S1G367400
Ledus.S1	AUGUSTUS	transcript	29911164	29913224	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	start_codon	29911164	29911166	.	+	0	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29911164	29911233	0.33	+	0	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29911164	29911233	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29911234	29911481	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29911482	29911592	0.88	+	2	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29911482	29911592	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29911593	29911682	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29911683	29912099	0.92	+	2	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29911683	29912099	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29912100	29912198	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29912199	29912740	0.41	+	2	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29912199	29912740	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29912741	29912830	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29912831	29912902	1	+	0	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29912831	29912902	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29912903	29913014	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29913015	29913038	1	+	0	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29913015	29913038	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29913039	29913137	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29913138	29913224	0.94	+	0	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29913138	29913224	.	+	.	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	stop_codon	29913225	29913227	.	+	0	transcript_id "Ledus.S1G367400.t1"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	transcript	29911027	29913224	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	start_codon	29911027	29911029	.	+	0	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29911027	29911112	0.46	+	0	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29911027	29911112	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29911113	29911208	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29911209	29911233	0.61	+	1	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29911209	29911233	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29911234	29911477	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29911478	29911592	0.96	+	0	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29911478	29911592	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29911593	29911682	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29911683	29912099	0.91	+	2	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29911683	29912099	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29912100	29912198	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29912199	29912740	0.49	+	2	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29912199	29912740	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29912741	29912830	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29912831	29912902	1	+	0	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29912831	29912902	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29912903	29913014	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29913015	29913038	0.99	+	0	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29913015	29913038	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	intron	29913039	29913137	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	CDS	29913138	29913224	0.94	+	0	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	exon	29913138	29913224	.	+	.	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
Ledus.S1	AUGUSTUS	stop_codon	29913225	29913227	.	+	0	transcript_id "Ledus.S1G367400.t2"; gene_id "Ledus.S1G367400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3089.t1 is derived from g524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5811894	5812242	.	-	.	Ledus.S1G051000
Ledus.S1	AUGUSTUS	transcript	5811894	5812242	.	-	.	transcript_id "Ledus.S1G051000.t1"; gene_id "Ledus.S1G051000"
Ledus.S1	AUGUSTUS	stop_codon	5811891	5811893	.	-	0	transcript_id "Ledus.S1G051000.t1"; gene_id "Ledus.S1G051000"
Ledus.S1	AUGUSTUS	CDS	5811894	5812122	0.92	-	1	transcript_id "Ledus.S1G051000.t1"; gene_id "Ledus.S1G051000"
Ledus.S1	AUGUSTUS	exon	5811894	5812122	.	-	.	transcript_id "Ledus.S1G051000.t1"; gene_id "Ledus.S1G051000"
Ledus.S1	AUGUSTUS	intron	5812123	5812219	.	-	.	transcript_id "Ledus.S1G051000.t1"; gene_id "Ledus.S1G051000"
Ledus.S1	AUGUSTUS	CDS	5812220	5812242	0.76	-	0	transcript_id "Ledus.S1G051000.t1"; gene_id "Ledus.S1G051000"
Ledus.S1	AUGUSTUS	exon	5812220	5812242	.	-	.	transcript_id "Ledus.S1G051000.t1"; gene_id "Ledus.S1G051000"
Ledus.S1	AUGUSTUS	start_codon	5812240	5812242	.	-	0	transcript_id "Ledus.S1G051000.t1"; gene_id "Ledus.S1G051000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12703.t1 is derived from g6325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13978467	13978904	.	+	.	Ledus.S4G185900
Ledus.S4	AUGUSTUS	transcript	13978467	13978904	.	+	.	transcript_id "Ledus.S4G185900.t1"; gene_id "Ledus.S4G185900"
Ledus.S4	AUGUSTUS	start_codon	13978467	13978469	.	+	0	transcript_id "Ledus.S4G185900.t1"; gene_id "Ledus.S4G185900"
Ledus.S4	AUGUSTUS	CDS	13978467	13978904	0.86	+	0	transcript_id "Ledus.S4G185900.t1"; gene_id "Ledus.S4G185900"
Ledus.S4	AUGUSTUS	exon	13978467	13978904	.	+	.	transcript_id "Ledus.S4G185900.t1"; gene_id "Ledus.S4G185900"
Ledus.S4	AUGUSTUS	stop_codon	13978905	13978907	.	+	0	transcript_id "Ledus.S4G185900.t1"; gene_id "Ledus.S4G185900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11727.t1 is derived from g5346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6284221	6284625	.	+	.	Ledus.S4G088300
Ledus.S4	AUGUSTUS	transcript	6284221	6284625	.	+	.	transcript_id "Ledus.S4G088300.t1"; gene_id "Ledus.S4G088300"
Ledus.S4	AUGUSTUS	start_codon	6284221	6284223	.	+	0	transcript_id "Ledus.S4G088300.t1"; gene_id "Ledus.S4G088300"
Ledus.S4	AUGUSTUS	CDS	6284221	6284366	0.47	+	0	transcript_id "Ledus.S4G088300.t1"; gene_id "Ledus.S4G088300"
Ledus.S4	AUGUSTUS	exon	6284221	6284366	.	+	.	transcript_id "Ledus.S4G088300.t1"; gene_id "Ledus.S4G088300"
Ledus.S4	AUGUSTUS	intron	6284367	6284513	.	+	.	transcript_id "Ledus.S4G088300.t1"; gene_id "Ledus.S4G088300"
Ledus.S4	AUGUSTUS	CDS	6284514	6284625	0.38	+	1	transcript_id "Ledus.S4G088300.t1"; gene_id "Ledus.S4G088300"
Ledus.S4	AUGUSTUS	exon	6284514	6284625	.	+	.	transcript_id "Ledus.S4G088300.t1"; gene_id "Ledus.S4G088300"
Ledus.S4	AUGUSTUS	stop_codon	6284626	6284628	.	+	0	transcript_id "Ledus.S4G088300.t1"; gene_id "Ledus.S4G088300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12193.t1 is derived from g5812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10237437	10238488	.	+	.	Ledus.S4G134900
Ledus.S4	AUGUSTUS	transcript	10237437	10238488	.	+	.	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	start_codon	10237437	10237439	.	+	0	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	CDS	10237437	10237472	0.94	+	0	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	exon	10237437	10237472	.	+	.	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	intron	10237473	10237759	.	+	.	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	CDS	10237760	10237818	0.96	+	0	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	exon	10237760	10237818	.	+	.	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	intron	10237819	10237987	.	+	.	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	CDS	10237988	10238022	1	+	1	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	exon	10237988	10238022	.	+	.	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	intron	10238023	10238185	.	+	.	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	CDS	10238186	10238298	1	+	2	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	exon	10238186	10238298	.	+	.	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	intron	10238299	10238395	.	+	.	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	CDS	10238396	10238488	0.89	+	0	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	exon	10238396	10238488	.	+	.	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
Ledus.S4	AUGUSTUS	stop_codon	10238489	10238491	.	+	0	transcript_id "Ledus.S4G134900.t1"; gene_id "Ledus.S4G134900"
# This transcript jg12161.t2 is derived from g5780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12161.t3 is derived from g5780.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12162.t1 is derived from g5781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10056937	10058503	.	+	.	Ledus.S4G131800
Ledus.S4	AUGUSTUS	transcript	10056937	10058503	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	start_codon	10056937	10056939	.	+	0	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	CDS	10056937	10057068	1	+	0	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	exon	10056937	10057068	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	intron	10057069	10057165	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	CDS	10057166	10057234	0.77	+	0	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	exon	10057166	10057234	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	intron	10057235	10057349	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	CDS	10057350	10057425	0.7	+	0	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	exon	10057350	10057425	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	intron	10057426	10057541	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	CDS	10057542	10057606	0.98	+	2	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	exon	10057542	10057606	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	intron	10057607	10057710	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	CDS	10057711	10057754	0.65	+	0	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	exon	10057711	10057754	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	intron	10057755	10058007	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	CDS	10058008	10058101	0.56	+	1	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	exon	10058008	10058101	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	intron	10058102	10058269	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	CDS	10058270	10058503	0.34	+	0	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	exon	10058270	10058503	.	+	.	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
Ledus.S4	AUGUSTUS	stop_codon	10058504	10058506	.	+	0	transcript_id "Ledus.S4G131800.t1"; gene_id "Ledus.S4G131800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10546.t1 is derived from g11576.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16051545	16053010	.	+	.	Ledus.S3G202300
Ledus.S3	AUGUSTUS	transcript	16051545	16053010	.	+	.	transcript_id "Ledus.S3G202300.t1"; gene_id "Ledus.S3G202300"
Ledus.S3	AUGUSTUS	start_codon	16051545	16051547	.	+	0	transcript_id "Ledus.S3G202300.t1"; gene_id "Ledus.S3G202300"
Ledus.S3	AUGUSTUS	CDS	16051545	16051694	0.94	+	0	transcript_id "Ledus.S3G202300.t1"; gene_id "Ledus.S3G202300"
Ledus.S3	AUGUSTUS	exon	16051545	16051694	.	+	.	transcript_id "Ledus.S3G202300.t1"; gene_id "Ledus.S3G202300"
Ledus.S3	AUGUSTUS	intron	16051695	16052609	.	+	.	transcript_id "Ledus.S3G202300.t1"; gene_id "Ledus.S3G202300"
Ledus.S3	AUGUSTUS	CDS	16052610	16052797	1	+	0	transcript_id "Ledus.S3G202300.t1"; gene_id "Ledus.S3G202300"
Ledus.S3	AUGUSTUS	exon	16052610	16052797	.	+	.	transcript_id "Ledus.S3G202300.t1"; gene_id "Ledus.S3G202300"
Ledus.S3	AUGUSTUS	intron	16052798	16052928	.	+	.	transcript_id "Ledus.S3G202300.t1"; gene_id "Ledus.S3G202300"
Ledus.S3	AUGUSTUS	CDS	16052929	16053010	1	+	1	transcript_id "Ledus.S3G202300.t1"; gene_id "Ledus.S3G202300"
Ledus.S3	AUGUSTUS	exon	16052929	16053010	.	+	.	transcript_id "Ledus.S3G202300.t1"; gene_id "Ledus.S3G202300"
Ledus.S3	AUGUSTUS	stop_codon	16053011	16053013	.	+	0	transcript_id "Ledus.S3G202300.t1"; gene_id "Ledus.S3G202300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11087.t1 is derived from g4705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1706707	1709380	.	-	.	Ledus.S4G024300
Ledus.S4	AUGUSTUS	transcript	1706707	1709380	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	stop_codon	1706704	1706706	.	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1706707	1706820	1	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1706707	1706820	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1706821	1706911	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1706912	1706977	1	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1706912	1706977	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1706978	1707073	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1707074	1707145	1	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1707074	1707145	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1707146	1707243	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1707244	1707357	1	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1707244	1707357	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1707358	1707484	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1707485	1707577	1	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1707485	1707577	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1707578	1707674	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1707675	1707737	1	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1707675	1707737	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1707738	1707877	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1707878	1707988	1	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1707878	1707988	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1707989	1708093	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1708094	1708207	1	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1708094	1708207	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1708208	1708307	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1708308	1708406	1	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1708308	1708406	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1708407	1708503	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1708504	1708569	1	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1708504	1708569	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1708570	1708668	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1708669	1708764	1	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1708669	1708764	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1708765	1708864	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1708865	1708949	1	-	1	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1708865	1708949	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1708950	1709081	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1709082	1709229	1	-	2	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1709082	1709229	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	intron	1709230	1709316	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	CDS	1709317	1709380	0.82	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	exon	1709317	1709380	.	-	.	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
Ledus.S4	AUGUSTUS	start_codon	1709378	1709380	.	-	0	transcript_id "Ledus.S4G024300.t1"; gene_id "Ledus.S4G024300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12927.t1 is derived from g4419.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	363244	368391	.	+	.	Ledus.C9G003500
Ledus.C9	AUGUSTUS	transcript	363244	368391	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	start_codon	363244	363246	.	+	0	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	363244	363286	0.99	+	0	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	363244	363286	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	363287	363386	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	363387	363488	0.99	+	2	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	363387	363488	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	363489	364171	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	364172	364275	1	+	2	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	364172	364275	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	364276	364412	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	364413	364508	1	+	0	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	364413	364508	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	364509	364629	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	364630	364749	1	+	0	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	364630	364749	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	364750	364877	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	364878	365090	1	+	0	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	364878	365090	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	365091	365204	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	365205	365296	0.73	+	0	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	365205	365296	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	365297	365642	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	365643	365761	1	+	1	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	365643	365761	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	365762	366568	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	366569	366692	1	+	2	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	366569	366692	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	366693	366960	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	366961	367084	1	+	1	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	366961	367084	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	367085	367315	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	367316	367384	1	+	0	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	367316	367384	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	367385	367564	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	367565	367656	1	+	0	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	367565	367656	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	367657	367776	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	367777	367854	1	+	1	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	367777	367854	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	367855	367985	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	367986	368059	1	+	1	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	367986	368059	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	368060	368257	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	368258	368391	1	+	2	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	368258	368391	.	+	.	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	stop_codon	368392	368394	.	+	0	transcript_id "Ledus.C9G003500.t1"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	transcript	363244	368391	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	start_codon	363244	363246	.	+	0	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	363244	363257	0.93	+	0	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	363244	363257	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	363258	363348	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	363349	363488	0.93	+	1	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	363349	363488	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	363489	364171	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	364172	364275	1	+	2	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	364172	364275	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	364276	364412	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	364413	364508	1	+	0	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	364413	364508	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	364509	364629	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	364630	364749	1	+	0	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	364630	364749	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	364750	364877	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	364878	365090	1	+	0	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	364878	365090	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	365091	365204	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	365205	365296	0.74	+	0	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	365205	365296	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	365297	365642	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	365643	365761	1	+	1	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	365643	365761	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	365762	366568	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	366569	366692	1	+	2	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	366569	366692	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	366693	366960	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	366961	367084	1	+	1	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	366961	367084	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	367085	367315	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	367316	367384	1	+	0	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	367316	367384	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	367385	367564	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	367565	367656	1	+	0	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	367565	367656	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	367657	367776	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	367777	367854	1	+	1	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	367777	367854	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	367855	367985	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	367986	368059	1	+	1	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	367986	368059	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	intron	368060	368257	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	CDS	368258	368391	1	+	2	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	exon	368258	368391	.	+	.	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
Ledus.C9	AUGUSTUS	stop_codon	368392	368394	.	+	0	transcript_id "Ledus.C9G003500.t2"; gene_id "Ledus.C9G003500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8153.t1 is derived from g12824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9432411	9432878	.	+	.	Ledus.S5G093100
Ledus.S5	AUGUSTUS	transcript	9432411	9432878	.	+	.	transcript_id "Ledus.S5G093100.t1"; gene_id "Ledus.S5G093100"
Ledus.S5	AUGUSTUS	start_codon	9432411	9432413	.	+	0	transcript_id "Ledus.S5G093100.t1"; gene_id "Ledus.S5G093100"
Ledus.S5	AUGUSTUS	CDS	9432411	9432878	0.46	+	0	transcript_id "Ledus.S5G093100.t1"; gene_id "Ledus.S5G093100"
Ledus.S5	AUGUSTUS	exon	9432411	9432878	.	+	.	transcript_id "Ledus.S5G093100.t1"; gene_id "Ledus.S5G093100"
Ledus.S5	AUGUSTUS	stop_codon	9432879	9432881	.	+	0	transcript_id "Ledus.S5G093100.t1"; gene_id "Ledus.S5G093100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4804.t1 is derived from g2242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19861878	19862236	.	-	.	Ledus.S1G222500
Ledus.S1	AUGUSTUS	transcript	19861878	19862236	.	-	.	transcript_id "Ledus.S1G222500.t1"; gene_id "Ledus.S1G222500"
Ledus.S1	AUGUSTUS	stop_codon	19861875	19861877	.	-	0	transcript_id "Ledus.S1G222500.t1"; gene_id "Ledus.S1G222500"
Ledus.S1	AUGUSTUS	CDS	19861878	19861922	0.67	-	0	transcript_id "Ledus.S1G222500.t1"; gene_id "Ledus.S1G222500"
Ledus.S1	AUGUSTUS	exon	19861878	19861922	.	-	.	transcript_id "Ledus.S1G222500.t1"; gene_id "Ledus.S1G222500"
Ledus.S1	AUGUSTUS	intron	19861923	19862056	.	-	.	transcript_id "Ledus.S1G222500.t1"; gene_id "Ledus.S1G222500"
Ledus.S1	AUGUSTUS	CDS	19862057	19862236	0.66	-	0	transcript_id "Ledus.S1G222500.t1"; gene_id "Ledus.S1G222500"
Ledus.S1	AUGUSTUS	exon	19862057	19862236	.	-	.	transcript_id "Ledus.S1G222500.t1"; gene_id "Ledus.S1G222500"
Ledus.S1	AUGUSTUS	start_codon	19862234	19862236	.	-	0	transcript_id "Ledus.S1G222500.t1"; gene_id "Ledus.S1G222500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5702.t1 is derived from g3141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26020855	26021955	.	-	.	Ledus.S1G312300
Ledus.S1	AUGUSTUS	transcript	26020855	26021955	.	-	.	transcript_id "Ledus.S1G312300.t1"; gene_id "Ledus.S1G312300"
Ledus.S1	AUGUSTUS	stop_codon	26020852	26020854	.	-	0	transcript_id "Ledus.S1G312300.t1"; gene_id "Ledus.S1G312300"
Ledus.S1	AUGUSTUS	CDS	26020855	26021152	1	-	1	transcript_id "Ledus.S1G312300.t1"; gene_id "Ledus.S1G312300"
Ledus.S1	AUGUSTUS	exon	26020855	26021152	.	-	.	transcript_id "Ledus.S1G312300.t1"; gene_id "Ledus.S1G312300"
Ledus.S1	AUGUSTUS	intron	26021153	26021249	.	-	.	transcript_id "Ledus.S1G312300.t1"; gene_id "Ledus.S1G312300"
Ledus.S1	AUGUSTUS	CDS	26021250	26021437	1	-	0	transcript_id "Ledus.S1G312300.t1"; gene_id "Ledus.S1G312300"
Ledus.S1	AUGUSTUS	exon	26021250	26021437	.	-	.	transcript_id "Ledus.S1G312300.t1"; gene_id "Ledus.S1G312300"
Ledus.S1	AUGUSTUS	intron	26021438	26021715	.	-	.	transcript_id "Ledus.S1G312300.t1"; gene_id "Ledus.S1G312300"
Ledus.S1	AUGUSTUS	CDS	26021716	26021955	0.59	-	0	transcript_id "Ledus.S1G312300.t1"; gene_id "Ledus.S1G312300"
Ledus.S1	AUGUSTUS	exon	26021716	26021955	.	-	.	transcript_id "Ledus.S1G312300.t1"; gene_id "Ledus.S1G312300"
Ledus.S1	AUGUSTUS	start_codon	26021953	26021955	.	-	0	transcript_id "Ledus.S1G312300.t1"; gene_id "Ledus.S1G312300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11106.t1 is derived from g4724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1855435	1856029	.	+	.	Ledus.S4G026200
Ledus.S4	AUGUSTUS	transcript	1855435	1856029	.	+	.	transcript_id "Ledus.S4G026200.t1"; gene_id "Ledus.S4G026200"
Ledus.S4	AUGUSTUS	start_codon	1855435	1855437	.	+	0	transcript_id "Ledus.S4G026200.t1"; gene_id "Ledus.S4G026200"
Ledus.S4	AUGUSTUS	CDS	1855435	1855810	0.85	+	0	transcript_id "Ledus.S4G026200.t1"; gene_id "Ledus.S4G026200"
Ledus.S4	AUGUSTUS	exon	1855435	1855810	.	+	.	transcript_id "Ledus.S4G026200.t1"; gene_id "Ledus.S4G026200"
Ledus.S4	AUGUSTUS	intron	1855811	1855868	.	+	.	transcript_id "Ledus.S4G026200.t1"; gene_id "Ledus.S4G026200"
Ledus.S4	AUGUSTUS	CDS	1855869	1856029	0.88	+	2	transcript_id "Ledus.S4G026200.t1"; gene_id "Ledus.S4G026200"
Ledus.S4	AUGUSTUS	exon	1855869	1856029	.	+	.	transcript_id "Ledus.S4G026200.t1"; gene_id "Ledus.S4G026200"
Ledus.S4	AUGUSTUS	stop_codon	1856030	1856032	.	+	0	transcript_id "Ledus.S4G026200.t1"; gene_id "Ledus.S4G026200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2677.t1 is derived from g110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1597040	1598869	.	+	.	Ledus.S1G009800
Ledus.S1	AUGUSTUS	transcript	1597040	1598869	.	+	.	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	start_codon	1597040	1597042	.	+	0	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	CDS	1597040	1597395	0.61	+	0	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	exon	1597040	1597395	.	+	.	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	intron	1597396	1597556	.	+	.	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	CDS	1597557	1597591	0.46	+	1	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	exon	1597557	1597591	.	+	.	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	intron	1597592	1597680	.	+	.	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	CDS	1597681	1597845	0.3	+	2	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	exon	1597681	1597845	.	+	.	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	intron	1597846	1597979	.	+	.	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	CDS	1597980	1598186	0.14	+	2	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	exon	1597980	1598186	.	+	.	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	intron	1598187	1598430	.	+	.	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	CDS	1598431	1598660	0.44	+	2	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	exon	1598431	1598660	.	+	.	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	intron	1598661	1598794	.	+	.	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	CDS	1598795	1598869	0.79	+	0	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	exon	1598795	1598869	.	+	.	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
Ledus.S1	AUGUSTUS	stop_codon	1598870	1598872	.	+	0	transcript_id "Ledus.S1G009800.t1"; gene_id "Ledus.S1G009800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6630.t1 is derived from g4073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32798120	32799660	.	+	.	Ledus.S1G405100
Ledus.S1	AUGUSTUS	transcript	32798120	32799660	.	+	.	transcript_id "Ledus.S1G405100.t1"; gene_id "Ledus.S1G405100"
Ledus.S1	AUGUSTUS	start_codon	32798120	32798122	.	+	0	transcript_id "Ledus.S1G405100.t1"; gene_id "Ledus.S1G405100"
Ledus.S1	AUGUSTUS	CDS	32798120	32798578	0.75	+	0	transcript_id "Ledus.S1G405100.t1"; gene_id "Ledus.S1G405100"
Ledus.S1	AUGUSTUS	exon	32798120	32798578	.	+	.	transcript_id "Ledus.S1G405100.t1"; gene_id "Ledus.S1G405100"
Ledus.S1	AUGUSTUS	intron	32798579	32798648	.	+	.	transcript_id "Ledus.S1G405100.t1"; gene_id "Ledus.S1G405100"
Ledus.S1	AUGUSTUS	CDS	32798649	32799060	1	+	0	transcript_id "Ledus.S1G405100.t1"; gene_id "Ledus.S1G405100"
Ledus.S1	AUGUSTUS	exon	32798649	32799060	.	+	.	transcript_id "Ledus.S1G405100.t1"; gene_id "Ledus.S1G405100"
Ledus.S1	AUGUSTUS	intron	32799061	32799142	.	+	.	transcript_id "Ledus.S1G405100.t1"; gene_id "Ledus.S1G405100"
Ledus.S1	AUGUSTUS	CDS	32799143	32799660	1	+	2	transcript_id "Ledus.S1G405100.t1"; gene_id "Ledus.S1G405100"
Ledus.S1	AUGUSTUS	exon	32799143	32799660	.	+	.	transcript_id "Ledus.S1G405100.t1"; gene_id "Ledus.S1G405100"
Ledus.S1	AUGUSTUS	stop_codon	32799661	32799663	.	+	0	transcript_id "Ledus.S1G405100.t1"; gene_id "Ledus.S1G405100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12363.t1 is derived from g5984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11439404	11439809	.	-	.	Ledus.S4G151900
Ledus.S4	AUGUSTUS	transcript	11439404	11439809	.	-	.	transcript_id "Ledus.S4G151900.t1"; gene_id "Ledus.S4G151900"
Ledus.S4	AUGUSTUS	stop_codon	11439401	11439403	.	-	0	transcript_id "Ledus.S4G151900.t1"; gene_id "Ledus.S4G151900"
Ledus.S4	AUGUSTUS	CDS	11439404	11439482	0.64	-	1	transcript_id "Ledus.S4G151900.t1"; gene_id "Ledus.S4G151900"
Ledus.S4	AUGUSTUS	exon	11439404	11439482	.	-	.	transcript_id "Ledus.S4G151900.t1"; gene_id "Ledus.S4G151900"
Ledus.S4	AUGUSTUS	intron	11439483	11439591	.	-	.	transcript_id "Ledus.S4G151900.t1"; gene_id "Ledus.S4G151900"
Ledus.S4	AUGUSTUS	CDS	11439592	11439809	0.67	-	0	transcript_id "Ledus.S4G151900.t1"; gene_id "Ledus.S4G151900"
Ledus.S4	AUGUSTUS	exon	11439592	11439809	.	-	.	transcript_id "Ledus.S4G151900.t1"; gene_id "Ledus.S4G151900"
Ledus.S4	AUGUSTUS	start_codon	11439807	11439809	.	-	0	transcript_id "Ledus.S4G151900.t1"; gene_id "Ledus.S4G151900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4134.t1 is derived from g1570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14881156	14881842	.	+	.	Ledus.S1G155500
Ledus.S1	AUGUSTUS	transcript	14881156	14881842	.	+	.	transcript_id "Ledus.S1G155500.t1"; gene_id "Ledus.S1G155500"
Ledus.S1	AUGUSTUS	start_codon	14881156	14881158	.	+	0	transcript_id "Ledus.S1G155500.t1"; gene_id "Ledus.S1G155500"
Ledus.S1	AUGUSTUS	CDS	14881156	14881842	0.71	+	0	transcript_id "Ledus.S1G155500.t1"; gene_id "Ledus.S1G155500"
Ledus.S1	AUGUSTUS	exon	14881156	14881842	.	+	.	transcript_id "Ledus.S1G155500.t1"; gene_id "Ledus.S1G155500"
Ledus.S1	AUGUSTUS	stop_codon	14881843	14881845	.	+	0	transcript_id "Ledus.S1G155500.t1"; gene_id "Ledus.S1G155500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4070.t1 is derived from g1506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14445692	14446199	.	+	.	Ledus.S1G149100
Ledus.S1	AUGUSTUS	transcript	14445692	14446199	.	+	.	transcript_id "Ledus.S1G149100.t1"; gene_id "Ledus.S1G149100"
Ledus.S1	AUGUSTUS	start_codon	14445692	14445694	.	+	0	transcript_id "Ledus.S1G149100.t1"; gene_id "Ledus.S1G149100"
Ledus.S1	AUGUSTUS	CDS	14445692	14445694	0.3	+	0	transcript_id "Ledus.S1G149100.t1"; gene_id "Ledus.S1G149100"
Ledus.S1	AUGUSTUS	exon	14445692	14445694	.	+	.	transcript_id "Ledus.S1G149100.t1"; gene_id "Ledus.S1G149100"
Ledus.S1	AUGUSTUS	intron	14445695	14445977	.	+	.	transcript_id "Ledus.S1G149100.t1"; gene_id "Ledus.S1G149100"
Ledus.S1	AUGUSTUS	CDS	14445978	14446199	0.67	+	0	transcript_id "Ledus.S1G149100.t1"; gene_id "Ledus.S1G149100"
Ledus.S1	AUGUSTUS	exon	14445978	14446199	.	+	.	transcript_id "Ledus.S1G149100.t1"; gene_id "Ledus.S1G149100"
Ledus.S1	AUGUSTUS	stop_codon	14446200	14446202	.	+	0	transcript_id "Ledus.S1G149100.t1"; gene_id "Ledus.S1G149100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12820.t1 is derived from g6442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15054286	15057131	.	+	.	Ledus.S4G197600
Ledus.S4	AUGUSTUS	transcript	15054286	15057131	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	start_codon	15054286	15054288	.	+	0	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	CDS	15054286	15054648	0.55	+	0	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	exon	15054286	15054648	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	intron	15054649	15054746	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	CDS	15054747	15054893	0.95	+	0	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	exon	15054747	15054893	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	intron	15054894	15055141	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	CDS	15055142	15055406	0.67	+	0	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	exon	15055142	15055406	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	intron	15055407	15055479	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	CDS	15055480	15055634	0.52	+	2	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	exon	15055480	15055634	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	intron	15055635	15055769	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	CDS	15055770	15055945	1	+	0	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	exon	15055770	15055945	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	intron	15055946	15056221	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	CDS	15056222	15056330	1	+	1	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	exon	15056222	15056330	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	intron	15056331	15056417	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	CDS	15056418	15057131	0.99	+	0	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	exon	15056418	15057131	.	+	.	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
Ledus.S4	AUGUSTUS	stop_codon	15057132	15057134	.	+	0	transcript_id "Ledus.S4G197600.t1"; gene_id "Ledus.S4G197600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9761.t1 is derived from g10791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9642560	9644161	.	-	.	Ledus.S3G123800
Ledus.S3	AUGUSTUS	transcript	9642560	9644161	.	-	.	transcript_id "Ledus.S3G123800.t1"; gene_id "Ledus.S3G123800"
Ledus.S3	AUGUSTUS	stop_codon	9642557	9642559	.	-	0	transcript_id "Ledus.S3G123800.t1"; gene_id "Ledus.S3G123800"
Ledus.S3	AUGUSTUS	CDS	9642560	9644161	0.65	-	0	transcript_id "Ledus.S3G123800.t1"; gene_id "Ledus.S3G123800"
Ledus.S3	AUGUSTUS	exon	9642560	9644161	.	-	.	transcript_id "Ledus.S3G123800.t1"; gene_id "Ledus.S3G123800"
Ledus.S3	AUGUSTUS	start_codon	9644159	9644161	.	-	0	transcript_id "Ledus.S3G123800.t1"; gene_id "Ledus.S3G123800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11600.t1 is derived from g5218.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5462078	5470717	.	+	.	Ledus.S4G075600
Ledus.S4	AUGUSTUS	transcript	5462078	5470717	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	start_codon	5462078	5462080	.	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5462078	5462355	1	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5462078	5462355	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5462356	5462558	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5462559	5463152	1	+	1	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5462559	5463152	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5463153	5463317	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5463318	5463523	0.99	+	1	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5463318	5463523	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5463524	5464114	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5464115	5465130	0.72	+	2	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5464115	5465130	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5465131	5465214	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5465215	5465286	1	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5465215	5465286	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5465287	5465364	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5465365	5465469	1	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5465365	5465469	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5465470	5465592	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5465593	5465779	1	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5465593	5465779	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5465780	5465968	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5465969	5466060	1	+	2	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5465969	5466060	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5466061	5466248	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5466249	5466362	0.84	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5466249	5466362	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5466363	5466484	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5466485	5466576	0.84	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5466485	5466576	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5466577	5466689	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5466690	5466804	0.85	+	1	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5466690	5466804	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5466805	5466933	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5466934	5467089	0.98	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5466934	5467089	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5467090	5467248	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5467249	5467358	1	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5467249	5467358	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5467359	5467678	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5467679	5467817	1	+	1	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5467679	5467817	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5467818	5467970	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5467971	5468138	1	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5467971	5468138	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5468139	5468299	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5468300	5468591	1	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5468300	5468591	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5468592	5468676	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5468677	5470445	1	+	2	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5468677	5470445	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	intron	5470446	5470534	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	CDS	5470535	5470717	0.91	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	exon	5470535	5470717	.	+	.	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
Ledus.S4	AUGUSTUS	stop_codon	5470718	5470720	.	+	0	transcript_id "Ledus.S4G075600.t1"; gene_id "Ledus.S4G075600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7529.t1 is derived from g12200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3628859	3629116	.	-	.	Ledus.S5G030700
Ledus.S5	AUGUSTUS	transcript	3628859	3629116	.	-	.	transcript_id "Ledus.S5G030700.t1"; gene_id "Ledus.S5G030700"
Ledus.S5	AUGUSTUS	stop_codon	3628856	3628858	.	-	0	transcript_id "Ledus.S5G030700.t1"; gene_id "Ledus.S5G030700"
Ledus.S5	AUGUSTUS	CDS	3628859	3629116	0.69	-	0	transcript_id "Ledus.S5G030700.t1"; gene_id "Ledus.S5G030700"
Ledus.S5	AUGUSTUS	exon	3628859	3629116	.	-	.	transcript_id "Ledus.S5G030700.t1"; gene_id "Ledus.S5G030700"
Ledus.S5	AUGUSTUS	start_codon	3629114	3629116	.	-	0	transcript_id "Ledus.S5G030700.t1"; gene_id "Ledus.S5G030700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9405.t1 is derived from g10435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6584366	6587064	.	-	.	Ledus.S3G088200
Ledus.S3	AUGUSTUS	transcript	6584366	6587064	.	-	.	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	stop_codon	6584363	6584365	.	-	0	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	CDS	6584366	6584413	0.96	-	0	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	exon	6584366	6584413	.	-	.	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	intron	6584414	6584585	.	-	.	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	CDS	6584586	6584615	0.96	-	0	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	exon	6584586	6584615	.	-	.	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	intron	6584616	6584771	.	-	.	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	CDS	6584772	6584919	1	-	1	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	exon	6584772	6584919	.	-	.	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	intron	6584920	6585050	.	-	.	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	CDS	6585051	6585157	0.76	-	0	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	exon	6585051	6585157	.	-	.	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	intron	6585158	6585490	.	-	.	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	CDS	6585491	6585579	0.9	-	2	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	exon	6585491	6585579	.	-	.	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	intron	6585580	6585713	.	-	.	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	CDS	6585714	6587064	0.97	-	0	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	exon	6585714	6587064	.	-	.	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	start_codon	6587062	6587064	.	-	0	transcript_id "Ledus.S3G088200.t1"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	transcript	6584568	6587064	.	-	.	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	stop_codon	6584565	6584567	.	-	0	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	CDS	6584568	6584615	1	-	0	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	exon	6584568	6584615	.	-	.	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	intron	6584616	6584771	.	-	.	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	CDS	6584772	6584919	1	-	1	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	exon	6584772	6584919	.	-	.	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	intron	6584920	6585050	.	-	.	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	CDS	6585051	6585157	0.74	-	0	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	exon	6585051	6585157	.	-	.	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	intron	6585158	6585490	.	-	.	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	CDS	6585491	6585579	0.89	-	2	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	exon	6585491	6585579	.	-	.	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	intron	6585580	6585713	.	-	.	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	CDS	6585714	6587064	0.96	-	0	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	exon	6585714	6587064	.	-	.	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
Ledus.S3	AUGUSTUS	start_codon	6587062	6587064	.	-	0	transcript_id "Ledus.S3G088200.t2"; gene_id "Ledus.S3G088200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11084.t1 is derived from g4702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1681182	1681689	.	+	.	Ledus.S4G024000
Ledus.S4	AUGUSTUS	transcript	1681182	1681689	.	+	.	transcript_id "Ledus.S4G024000.t1"; gene_id "Ledus.S4G024000"
Ledus.S4	AUGUSTUS	start_codon	1681182	1681184	.	+	0	transcript_id "Ledus.S4G024000.t1"; gene_id "Ledus.S4G024000"
Ledus.S4	AUGUSTUS	CDS	1681182	1681339	0.92	+	0	transcript_id "Ledus.S4G024000.t1"; gene_id "Ledus.S4G024000"
Ledus.S4	AUGUSTUS	exon	1681182	1681339	.	+	.	transcript_id "Ledus.S4G024000.t1"; gene_id "Ledus.S4G024000"
Ledus.S4	AUGUSTUS	intron	1681340	1681426	.	+	.	transcript_id "Ledus.S4G024000.t1"; gene_id "Ledus.S4G024000"
Ledus.S4	AUGUSTUS	CDS	1681427	1681559	1	+	1	transcript_id "Ledus.S4G024000.t1"; gene_id "Ledus.S4G024000"
Ledus.S4	AUGUSTUS	exon	1681427	1681559	.	+	.	transcript_id "Ledus.S4G024000.t1"; gene_id "Ledus.S4G024000"
Ledus.S4	AUGUSTUS	intron	1681560	1681635	.	+	.	transcript_id "Ledus.S4G024000.t1"; gene_id "Ledus.S4G024000"
Ledus.S4	AUGUSTUS	CDS	1681636	1681689	0.92	+	0	transcript_id "Ledus.S4G024000.t1"; gene_id "Ledus.S4G024000"
Ledus.S4	AUGUSTUS	exon	1681636	1681689	.	+	.	transcript_id "Ledus.S4G024000.t1"; gene_id "Ledus.S4G024000"
Ledus.S4	AUGUSTUS	stop_codon	1681690	1681692	.	+	0	transcript_id "Ledus.S4G024000.t1"; gene_id "Ledus.S4G024000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10141.t1 is derived from g11171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13134395	13137653	.	+	.	Ledus.S3G161800
Ledus.S3	AUGUSTUS	transcript	13134395	13137653	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	start_codon	13134395	13134397	.	+	0	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	CDS	13134395	13134743	0.74	+	0	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	exon	13134395	13134743	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	intron	13134744	13134960	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	CDS	13134961	13135028	1	+	2	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	exon	13134961	13135028	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	intron	13135029	13135298	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	CDS	13135299	13135522	1	+	0	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	exon	13135299	13135522	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	intron	13135523	13135624	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	CDS	13135625	13135708	0.99	+	1	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	exon	13135625	13135708	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	intron	13135709	13135864	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	CDS	13135865	13136078	1	+	1	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	exon	13135865	13136078	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	intron	13136079	13136420	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	CDS	13136421	13136597	1	+	0	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	exon	13136421	13136597	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	intron	13136598	13136742	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	CDS	13136743	13136862	1	+	0	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	exon	13136743	13136862	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	intron	13136863	13136955	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	CDS	13136956	13137105	0.71	+	0	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	exon	13136956	13137105	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	intron	13137106	13137422	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	CDS	13137423	13137653	0.47	+	0	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	exon	13137423	13137653	.	+	.	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
Ledus.S3	AUGUSTUS	stop_codon	13137654	13137656	.	+	0	transcript_id "Ledus.S3G161800.t1"; gene_id "Ledus.S3G161800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3940.t1 is derived from g1376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13659298	13660977	.	-	.	Ledus.S1G136100
Ledus.S1	AUGUSTUS	transcript	13659298	13660977	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	stop_codon	13659295	13659297	.	-	0	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	CDS	13659298	13659545	0.48	-	2	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	exon	13659298	13659545	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	intron	13659546	13659636	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	CDS	13659637	13659774	1	-	2	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	exon	13659637	13659774	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	intron	13659775	13659877	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	CDS	13659878	13659980	1	-	0	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	exon	13659878	13659980	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	intron	13659981	13660066	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	CDS	13660067	13660158	1	-	2	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	exon	13660067	13660158	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	intron	13660159	13660259	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	CDS	13660260	13660315	1	-	1	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	exon	13660260	13660315	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	intron	13660316	13660388	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	CDS	13660389	13660704	1	-	2	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	exon	13660389	13660704	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	intron	13660705	13660862	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	CDS	13660863	13660977	0.79	-	0	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	exon	13660863	13660977	.	-	.	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
Ledus.S1	AUGUSTUS	start_codon	13660975	13660977	.	-	0	transcript_id "Ledus.S1G136100.t1"; gene_id "Ledus.S1G136100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1128.t1 is derived from g7989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7789246	7797321	.	+	.	Ledus.S2G101000
Ledus.S2	AUGUSTUS	transcript	7789246	7797321	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	start_codon	7789246	7789248	.	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7789246	7789702	0.93	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7789246	7789702	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7789703	7789848	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7789849	7789908	1	+	2	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7789849	7789908	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7789909	7790075	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7790076	7790133	1	+	2	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7790076	7790133	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7790134	7790274	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7790275	7790368	1	+	1	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7790275	7790368	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7790369	7790700	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7790701	7790764	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7790701	7790764	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7790765	7790879	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7790880	7790947	1	+	2	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7790880	7790947	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7790948	7791049	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7791050	7791126	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7791050	7791126	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7791127	7791379	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7791380	7791518	1	+	1	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7791380	7791518	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7791519	7791611	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7791612	7791668	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7791612	7791668	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7791669	7791841	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7791842	7791919	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7791842	7791919	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7791920	7792200	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7792201	7792260	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7792201	7792260	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7792261	7792393	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7792394	7792522	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7792394	7792522	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7792523	7792633	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7792634	7792699	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7792634	7792699	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7792700	7792806	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7792807	7792893	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7792807	7792893	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7792894	7792972	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7792973	7793031	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7792973	7793031	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7793032	7793128	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7793129	7793233	1	+	1	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7793129	7793233	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7793234	7793330	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7793331	7793412	1	+	1	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7793331	7793412	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7793413	7793543	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7793544	7793720	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7793544	7793720	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7793721	7793805	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7793806	7793952	0.99	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7793806	7793952	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7793953	7794150	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7794151	7794225	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7794151	7794225	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7794226	7794316	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7794317	7794373	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7794317	7794373	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7794374	7794469	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7794470	7794565	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7794470	7794565	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7794566	7794647	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7794648	7794755	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7794648	7794755	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7794756	7794848	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7794849	7794959	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7794849	7794959	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7794960	7795086	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7795087	7795203	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7795087	7795203	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7795204	7795513	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7795514	7795618	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7795514	7795618	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7795619	7795721	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7795722	7795835	0.98	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7795722	7795835	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7795836	7795924	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7795925	7795981	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7795925	7795981	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7795982	7796103	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7796104	7796166	0.98	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7796104	7796166	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7796167	7796251	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7796252	7796362	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7796252	7796362	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7796363	7796440	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7796441	7796544	0.99	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7796441	7796544	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7796545	7796655	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7796656	7796707	1	+	1	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7796656	7796707	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7796708	7796795	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7796796	7796942	0.99	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7796796	7796942	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7796943	7797052	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7797053	7797127	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7797053	7797127	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7797128	7797216	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7797217	7797321	1	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7797217	7797321	.	+	.	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	stop_codon	7797322	7797324	.	+	0	transcript_id "Ledus.S2G101000.t1"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	transcript	7789246	7797321	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	start_codon	7789246	7789248	.	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7789246	7789702	0.9	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7789246	7789702	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7789703	7789848	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7789849	7789908	1	+	2	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7789849	7789908	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7789909	7790075	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7790076	7790133	1	+	2	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7790076	7790133	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7790134	7790274	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7790275	7790368	1	+	1	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7790275	7790368	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7790369	7790700	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7790701	7790764	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7790701	7790764	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7790765	7790879	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7790880	7790947	1	+	2	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7790880	7790947	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7790948	7791049	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7791050	7791126	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7791050	7791126	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7791127	7791379	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7791380	7791518	1	+	1	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7791380	7791518	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7791519	7791611	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7791612	7791668	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7791612	7791668	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7791669	7791841	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7791842	7791919	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7791842	7791919	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7791920	7792200	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7792201	7792260	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7792201	7792260	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7792261	7792393	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7792394	7792522	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7792394	7792522	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7792523	7792633	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7792634	7792699	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7792634	7792699	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7792700	7792806	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7792807	7792893	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7792807	7792893	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7792894	7792972	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7792973	7793031	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7792973	7793031	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7793032	7793128	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7793129	7793233	1	+	1	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7793129	7793233	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7793234	7793330	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7793331	7793412	1	+	1	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7793331	7793412	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7793413	7793543	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7793544	7793720	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7793544	7793720	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7793721	7793805	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7793806	7793952	0.98	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7793806	7793952	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7793953	7794150	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7794151	7794225	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7794151	7794225	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7794226	7794316	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7794317	7794373	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7794317	7794373	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7794374	7794469	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7794470	7794565	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7794470	7794565	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7794566	7794647	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7794648	7794755	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7794648	7794755	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7794756	7794848	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7794849	7794959	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7794849	7794959	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7794960	7795086	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7795087	7795203	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7795087	7795203	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7795204	7795513	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7795514	7795618	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7795514	7795618	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7795619	7795721	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7795722	7795835	0.97	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7795722	7795835	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7795836	7795924	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7795925	7795981	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7795925	7795981	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7795982	7796103	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7796104	7796166	0.98	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7796104	7796166	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7796167	7796251	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7796252	7796364	0.47	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7796252	7796364	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7796365	7796440	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7796441	7796461	0.47	+	1	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7796441	7796461	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7796462	7796655	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7796656	7796707	0.99	+	1	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7796656	7796707	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7796708	7796795	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7796796	7796942	0.99	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7796796	7796942	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7796943	7797052	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7797053	7797127	0.99	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7797053	7797127	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	intron	7797128	7797216	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	CDS	7797217	7797321	1	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	exon	7797217	7797321	.	+	.	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
Ledus.S2	AUGUSTUS	stop_codon	7797322	7797324	.	+	0	transcript_id "Ledus.S2G101000.t2"; gene_id "Ledus.S2G101000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5264.t1 is derived from g2703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22782366	22783074	.	-	.	Ledus.S1G268500
Ledus.S1	AUGUSTUS	transcript	22782366	22783074	.	-	.	transcript_id "Ledus.S1G268500.t1"; gene_id "Ledus.S1G268500"
Ledus.S1	AUGUSTUS	stop_codon	22782363	22782365	.	-	0	transcript_id "Ledus.S1G268500.t1"; gene_id "Ledus.S1G268500"
Ledus.S1	AUGUSTUS	CDS	22782366	22782500	1	-	0	transcript_id "Ledus.S1G268500.t1"; gene_id "Ledus.S1G268500"
Ledus.S1	AUGUSTUS	exon	22782366	22782500	.	-	.	transcript_id "Ledus.S1G268500.t1"; gene_id "Ledus.S1G268500"
Ledus.S1	AUGUSTUS	intron	22782501	22782597	.	-	.	transcript_id "Ledus.S1G268500.t1"; gene_id "Ledus.S1G268500"
Ledus.S1	AUGUSTUS	CDS	22782598	22782761	1	-	2	transcript_id "Ledus.S1G268500.t1"; gene_id "Ledus.S1G268500"
Ledus.S1	AUGUSTUS	exon	22782598	22782761	.	-	.	transcript_id "Ledus.S1G268500.t1"; gene_id "Ledus.S1G268500"
Ledus.S1	AUGUSTUS	intron	22782762	22782932	.	-	.	transcript_id "Ledus.S1G268500.t1"; gene_id "Ledus.S1G268500"
Ledus.S1	AUGUSTUS	CDS	22782933	22783074	1	-	0	transcript_id "Ledus.S1G268500.t1"; gene_id "Ledus.S1G268500"
Ledus.S1	AUGUSTUS	exon	22782933	22783074	.	-	.	transcript_id "Ledus.S1G268500.t1"; gene_id "Ledus.S1G268500"
Ledus.S1	AUGUSTUS	start_codon	22783072	22783074	.	-	0	transcript_id "Ledus.S1G268500.t1"; gene_id "Ledus.S1G268500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10446.t1 is derived from g11476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15200259	15205841	.	+	.	Ledus.S3G192300
Ledus.S3	AUGUSTUS	transcript	15200259	15205841	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	start_codon	15200259	15200261	.	+	0	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15200259	15200533	0.86	+	0	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15200259	15200533	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15200534	15200726	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15200727	15201303	0.94	+	1	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15200727	15201303	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15201304	15201463	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15201464	15201523	0.88	+	0	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15201464	15201523	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15201524	15201764	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15201765	15201853	1	+	0	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15201765	15201853	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15201854	15202066	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15202067	15202152	1	+	1	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15202067	15202152	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15202153	15202250	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15202251	15202413	0.98	+	2	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15202251	15202413	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15202414	15202526	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15202527	15202650	0.98	+	1	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15202527	15202650	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15202651	15202763	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15202764	15202921	1	+	0	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15202764	15202921	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15202922	15203135	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15203136	15203220	1	+	1	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15203136	15203220	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15203221	15203363	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15203364	15203576	1	+	0	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15203364	15203576	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15203577	15203776	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15203777	15203838	1	+	0	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15203777	15203838	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15203839	15203986	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15203987	15205841	0.86	+	1	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15203987	15205841	.	+	.	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	stop_codon	15205842	15205844	.	+	0	transcript_id "Ledus.S3G192300.t1"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	transcript	15200259	15205841	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	start_codon	15200259	15200261	.	+	0	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15200259	15200533	0.82	+	0	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15200259	15200533	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15200534	15200726	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15200727	15201303	1	+	1	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15200727	15201303	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15201304	15201463	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15201464	15201494	0.29	+	0	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15201464	15201494	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15201495	15201610	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15201611	15201725	0.42	+	2	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15201611	15201725	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15201726	15202066	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15202067	15202152	1	+	1	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15202067	15202152	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15202153	15202250	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15202251	15202413	0.99	+	2	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15202251	15202413	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15202414	15202526	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15202527	15202650	0.99	+	1	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15202527	15202650	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15202651	15202763	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15202764	15202921	1	+	0	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15202764	15202921	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15202922	15203135	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15203136	15203220	1	+	1	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15203136	15203220	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15203221	15203363	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15203364	15203576	1	+	0	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15203364	15203576	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15203577	15203776	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15203777	15203838	1	+	0	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15203777	15203838	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	intron	15203839	15203986	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	CDS	15203987	15205841	0.86	+	1	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	exon	15203987	15205841	.	+	.	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
Ledus.S3	AUGUSTUS	stop_codon	15205842	15205844	.	+	0	transcript_id "Ledus.S3G192300.t2"; gene_id "Ledus.S3G192300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4721.t1 is derived from g2159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19253579	19253988	.	+	.	Ledus.S1G214200
Ledus.S1	AUGUSTUS	transcript	19253579	19253988	.	+	.	transcript_id "Ledus.S1G214200.t1"; gene_id "Ledus.S1G214200"
Ledus.S1	AUGUSTUS	start_codon	19253579	19253581	.	+	0	transcript_id "Ledus.S1G214200.t1"; gene_id "Ledus.S1G214200"
Ledus.S1	AUGUSTUS	CDS	19253579	19253758	0.53	+	0	transcript_id "Ledus.S1G214200.t1"; gene_id "Ledus.S1G214200"
Ledus.S1	AUGUSTUS	exon	19253579	19253758	.	+	.	transcript_id "Ledus.S1G214200.t1"; gene_id "Ledus.S1G214200"
Ledus.S1	AUGUSTUS	intron	19253759	19253844	.	+	.	transcript_id "Ledus.S1G214200.t1"; gene_id "Ledus.S1G214200"
Ledus.S1	AUGUSTUS	CDS	19253845	19253988	1	+	0	transcript_id "Ledus.S1G214200.t1"; gene_id "Ledus.S1G214200"
Ledus.S1	AUGUSTUS	exon	19253845	19253988	.	+	.	transcript_id "Ledus.S1G214200.t1"; gene_id "Ledus.S1G214200"
Ledus.S1	AUGUSTUS	stop_codon	19253989	19253991	.	+	0	transcript_id "Ledus.S1G214200.t1"; gene_id "Ledus.S1G214200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12199.t1 is derived from g5818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10263506	10267141	.	+	.	Ledus.S4G135500
Ledus.S4	AUGUSTUS	transcript	10263506	10267141	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	start_codon	10263506	10263508	.	+	0	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	CDS	10263506	10263555	0.73	+	0	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	exon	10263506	10263555	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	intron	10263556	10263722	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	CDS	10263723	10263857	0.67	+	1	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	exon	10263723	10263857	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	intron	10263858	10263981	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	CDS	10263982	10264016	0.99	+	1	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	exon	10263982	10264016	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	intron	10264017	10264161	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	CDS	10264162	10264301	1	+	2	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	exon	10264162	10264301	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	intron	10264302	10264393	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	CDS	10264394	10264619	1	+	0	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	exon	10264394	10264619	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	intron	10264620	10264739	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	CDS	10264740	10264991	0.83	+	2	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	exon	10264740	10264991	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	intron	10264992	10265107	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	CDS	10265108	10265158	1	+	2	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	exon	10265108	10265158	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	intron	10265159	10265250	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	CDS	10265251	10265511	0.94	+	2	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	exon	10265251	10265511	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	intron	10265512	10265604	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	CDS	10265605	10265657	1	+	2	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	exon	10265605	10265657	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	intron	10265658	10265761	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	CDS	10265762	10266131	0.98	+	0	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	exon	10265762	10266131	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	intron	10266132	10266224	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	CDS	10266225	10267141	1	+	2	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	exon	10266225	10267141	.	+	.	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
Ledus.S4	AUGUSTUS	stop_codon	10267142	10267144	.	+	0	transcript_id "Ledus.S4G135500.t1"; gene_id "Ledus.S4G135500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4631.t1 is derived from g2068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18372270	18373507	.	+	.	Ledus.S1G205200
Ledus.S1	AUGUSTUS	transcript	18372270	18373507	.	+	.	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	start_codon	18372270	18372272	.	+	0	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	CDS	18372270	18372726	0.46	+	0	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	exon	18372270	18372726	.	+	.	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	intron	18372727	18372815	.	+	.	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	CDS	18372816	18372940	0.91	+	2	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	exon	18372816	18372940	.	+	.	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	intron	18372941	18373069	.	+	.	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	CDS	18373070	18373076	0.51	+	0	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	exon	18373070	18373076	.	+	.	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	intron	18373077	18373250	.	+	.	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	CDS	18373251	18373507	0.57	+	2	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	exon	18373251	18373507	.	+	.	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
Ledus.S1	AUGUSTUS	stop_codon	18373508	18373510	.	+	0	transcript_id "Ledus.S1G205200.t1"; gene_id "Ledus.S1G205200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8728.t1 is derived from g9758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1608940	1611373	.	+	.	Ledus.S3G020500
Ledus.S3	AUGUSTUS	transcript	1608940	1611373	.	+	.	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	start_codon	1608940	1608942	.	+	0	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	CDS	1608940	1609046	0.44	+	0	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	exon	1608940	1609046	.	+	.	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	intron	1609047	1609135	.	+	.	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	CDS	1609136	1609410	0.82	+	1	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	exon	1609136	1609410	.	+	.	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	intron	1609411	1609494	.	+	.	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	CDS	1609495	1609837	1	+	2	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	exon	1609495	1609837	.	+	.	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	intron	1609838	1609941	.	+	.	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	CDS	1609942	1611373	0.86	+	1	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	exon	1609942	1611373	.	+	.	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
Ledus.S3	AUGUSTUS	stop_codon	1611374	1611376	.	+	0	transcript_id "Ledus.S3G020500.t1"; gene_id "Ledus.S3G020500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12519.t1 is derived from g6140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12705109	12709882	.	-	.	Ledus.S4G167500
Ledus.S4	AUGUSTUS	transcript	12705109	12709882	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	stop_codon	12705106	12705108	.	-	0	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	CDS	12705109	12705162	1	-	0	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	exon	12705109	12705162	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	intron	12705163	12705239	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	CDS	12705240	12705320	1	-	0	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	exon	12705240	12705320	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	intron	12705321	12705423	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	CDS	12705424	12706448	0.92	-	2	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	exon	12705424	12706448	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	intron	12706449	12706614	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	CDS	12706615	12707023	0.86	-	0	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	exon	12706615	12707023	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	intron	12707024	12707147	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	CDS	12707148	12708310	0.98	-	2	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	exon	12707148	12708310	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	intron	12708311	12708414	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	CDS	12708415	12708579	0.56	-	2	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	exon	12708415	12708579	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	intron	12708580	12708690	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	CDS	12708691	12708829	0.75	-	0	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	exon	12708691	12708829	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	intron	12708830	12708918	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	CDS	12708919	12709196	1	-	2	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	exon	12708919	12709196	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	intron	12709197	12709265	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	CDS	12709266	12709460	1	-	2	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	exon	12709266	12709460	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	intron	12709461	12709590	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	CDS	12709591	12709882	0.95	-	0	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	exon	12709591	12709882	.	-	.	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
Ledus.S4	AUGUSTUS	start_codon	12709880	12709882	.	-	0	transcript_id "Ledus.S4G167500.t1"; gene_id "Ledus.S4G167500"
# This transcript jg11034.t2 is derived from g4652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11035.t1 is derived from g4653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1316583	1317054	.	+	.	Ledus.S4G019100
Ledus.S4	AUGUSTUS	transcript	1316583	1317054	.	+	.	transcript_id "Ledus.S4G019100.t1"; gene_id "Ledus.S4G019100"
Ledus.S4	AUGUSTUS	start_codon	1316583	1316585	.	+	0	transcript_id "Ledus.S4G019100.t1"; gene_id "Ledus.S4G019100"
Ledus.S4	AUGUSTUS	CDS	1316583	1316753	0.95	+	0	transcript_id "Ledus.S4G019100.t1"; gene_id "Ledus.S4G019100"
Ledus.S4	AUGUSTUS	exon	1316583	1316753	.	+	.	transcript_id "Ledus.S4G019100.t1"; gene_id "Ledus.S4G019100"
Ledus.S4	AUGUSTUS	intron	1316754	1316934	.	+	.	transcript_id "Ledus.S4G019100.t1"; gene_id "Ledus.S4G019100"
Ledus.S4	AUGUSTUS	CDS	1316935	1317054	0.83	+	0	transcript_id "Ledus.S4G019100.t1"; gene_id "Ledus.S4G019100"
Ledus.S4	AUGUSTUS	exon	1316935	1317054	.	+	.	transcript_id "Ledus.S4G019100.t1"; gene_id "Ledus.S4G019100"
Ledus.S4	AUGUSTUS	stop_codon	1317055	1317057	.	+	0	transcript_id "Ledus.S4G019100.t1"; gene_id "Ledus.S4G019100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9089.t1 is derived from g10119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4465692	4466066	.	+	.	Ledus.S3G056600
Ledus.S3	AUGUSTUS	transcript	4465692	4466066	.	+	.	transcript_id "Ledus.S3G056600.t1"; gene_id "Ledus.S3G056600"
Ledus.S3	AUGUSTUS	start_codon	4465692	4465694	.	+	0	transcript_id "Ledus.S3G056600.t1"; gene_id "Ledus.S3G056600"
Ledus.S3	AUGUSTUS	CDS	4465692	4466066	0.47	+	0	transcript_id "Ledus.S3G056600.t1"; gene_id "Ledus.S3G056600"
Ledus.S3	AUGUSTUS	exon	4465692	4466066	.	+	.	transcript_id "Ledus.S3G056600.t1"; gene_id "Ledus.S3G056600"
Ledus.S3	AUGUSTUS	stop_codon	4466067	4466069	.	+	0	transcript_id "Ledus.S3G056600.t1"; gene_id "Ledus.S3G056600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg903.t1 is derived from g7764.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6036878	6041660	.	-	.	Ledus.S2G078500
Ledus.S2	AUGUSTUS	transcript	6036878	6041660	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	stop_codon	6036875	6036877	.	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6036878	6036896	0.77	-	1	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6036878	6036896	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6036897	6037041	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6037042	6037154	1	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6037042	6037154	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6037155	6037241	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6037242	6037403	1	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6037242	6037403	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6037404	6037494	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6037495	6037677	1	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6037495	6037677	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6037678	6037754	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6037755	6037880	1	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6037755	6037880	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6037881	6037967	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6037968	6038096	1	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6037968	6038096	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6038097	6038194	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6038195	6038279	1	-	1	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6038195	6038279	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6038280	6038418	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6038419	6038535	1	-	1	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6038419	6038535	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6038536	6038641	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6038642	6038830	1	-	1	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6038642	6038830	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6038831	6038973	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6038974	6039146	1	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6038974	6039146	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6039147	6039243	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6039244	6039435	1	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6039244	6039435	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6039436	6039529	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6039530	6039664	1	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6039530	6039664	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6039665	6039764	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6039765	6039972	1	-	1	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6039765	6039972	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6039973	6040137	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6040138	6040357	1	-	2	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6040138	6040357	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6040358	6040526	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6040527	6040671	0.61	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6040527	6040671	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6040672	6040803	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6040804	6040925	0.98	-	2	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6040804	6040925	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6040926	6041110	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6041111	6041292	1	-	1	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6041111	6041292	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6041293	6041389	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6041390	6041571	1	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6041390	6041571	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	intron	6041572	6041657	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	CDS	6041658	6041660	0.98	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	exon	6041658	6041660	.	-	.	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
Ledus.S2	AUGUSTUS	start_codon	6041658	6041660	.	-	0	transcript_id "Ledus.S2G078500.t1"; gene_id "Ledus.S2G078500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7727.t1 is derived from g12398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5594121	5595327	.	+	.	Ledus.S5G050500
Ledus.S5	AUGUSTUS	transcript	5594121	5595327	.	+	.	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	start_codon	5594121	5594123	.	+	0	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	CDS	5594121	5594223	0.67	+	0	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	exon	5594121	5594223	.	+	.	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	intron	5594224	5594339	.	+	.	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	CDS	5594340	5594624	1	+	2	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	exon	5594340	5594624	.	+	.	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	intron	5594625	5594730	.	+	.	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	CDS	5594731	5594772	0.92	+	2	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	exon	5594731	5594772	.	+	.	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	intron	5594773	5595247	.	+	.	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	CDS	5595248	5595327	1	+	2	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	exon	5595248	5595327	.	+	.	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
Ledus.S5	AUGUSTUS	stop_codon	5595328	5595330	.	+	0	transcript_id "Ledus.S5G050500.t1"; gene_id "Ledus.S5G050500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8958.t1 is derived from g9988.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3488980	3490023	.	+	.	Ledus.S3G043500
Ledus.S3	AUGUSTUS	transcript	3488980	3489974	.	+	.	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	start_codon	3488980	3488982	.	+	0	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	CDS	3488980	3489282	1	+	0	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	exon	3488980	3489282	.	+	.	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	intron	3489283	3489369	.	+	.	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	CDS	3489370	3489469	1	+	0	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	exon	3489370	3489469	.	+	.	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	intron	3489470	3489568	.	+	.	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	CDS	3489569	3489812	1	+	2	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	exon	3489569	3489812	.	+	.	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	intron	3489813	3489898	.	+	.	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	CDS	3489899	3489974	1	+	1	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	exon	3489899	3489974	.	+	.	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	stop_codon	3489975	3489977	.	+	0	transcript_id "Ledus.S3G043500.t1"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	transcript	3488980	3490023	.	+	.	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	start_codon	3488980	3488982	.	+	0	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	CDS	3488980	3489282	1	+	0	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	exon	3488980	3489282	.	+	.	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	intron	3489283	3489369	.	+	.	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	CDS	3489370	3489469	1	+	0	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	exon	3489370	3489469	.	+	.	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	intron	3489470	3489568	.	+	.	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	CDS	3489569	3489812	1	+	2	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	exon	3489569	3489812	.	+	.	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	intron	3489813	3489893	.	+	.	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	CDS	3489894	3490023	1	+	1	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	exon	3489894	3490023	.	+	.	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
Ledus.S3	AUGUSTUS	stop_codon	3490024	3490026	.	+	0	transcript_id "Ledus.S3G043500.t2"; gene_id "Ledus.S3G043500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11002.t1 is derived from g4620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1065401	1067102	.	-	.	Ledus.S4G015800
Ledus.S4	AUGUSTUS	transcript	1065401	1067102	.	-	.	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	stop_codon	1065398	1065400	.	-	0	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	CDS	1065401	1065499	0.67	-	0	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	exon	1065401	1065499	.	-	.	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	intron	1065500	1065587	.	-	.	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	CDS	1065588	1065695	1	-	0	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	exon	1065588	1065695	.	-	.	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	intron	1065696	1065791	.	-	.	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	CDS	1065792	1065938	1	-	0	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	exon	1065792	1065938	.	-	.	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	intron	1065939	1066020	.	-	.	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	CDS	1066021	1066521	0.89	-	0	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	exon	1066021	1066521	.	-	.	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	intron	1066522	1066679	.	-	.	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	CDS	1066680	1067102	1	-	0	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	exon	1066680	1067102	.	-	.	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
Ledus.S4	AUGUSTUS	start_codon	1067100	1067102	.	-	0	transcript_id "Ledus.S4G015800.t1"; gene_id "Ledus.S4G015800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4851.t1 is derived from g2289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20200118	20203362	.	-	.	Ledus.S1G227200
Ledus.S1	AUGUSTUS	transcript	20200118	20203362	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	stop_codon	20200115	20200117	.	-	0	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	CDS	20200118	20200195	0.83	-	0	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	exon	20200118	20200195	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	intron	20200196	20200289	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	CDS	20200290	20200325	0.85	-	0	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	exon	20200290	20200325	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	intron	20200326	20200610	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	CDS	20200611	20200657	0.59	-	2	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	exon	20200611	20200657	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	intron	20200658	20200739	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	CDS	20200740	20201428	0.99	-	1	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	exon	20200740	20201428	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	intron	20201429	20201510	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	CDS	20201511	20201796	0.99	-	2	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	exon	20201511	20201796	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	intron	20201797	20201881	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	CDS	20201882	20202209	1	-	0	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	exon	20201882	20202209	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	intron	20202210	20202294	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	CDS	20202295	20202532	1	-	1	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	exon	20202295	20202532	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	intron	20202533	20202623	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	CDS	20202624	20202833	0.93	-	1	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	exon	20202624	20202833	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	intron	20202834	20202926	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	CDS	20202927	20203014	1	-	2	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	exon	20202927	20203014	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	intron	20203015	20203184	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	CDS	20203185	20203362	0.98	-	0	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	exon	20203185	20203362	.	-	.	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
Ledus.S1	AUGUSTUS	start_codon	20203360	20203362	.	-	0	transcript_id "Ledus.S1G227200.t1"; gene_id "Ledus.S1G227200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3373.t1 is derived from g808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7932582	7937527	.	-	.	Ledus.S1G079400
Ledus.S1	AUGUSTUS	transcript	7932582	7937527	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	stop_codon	7932579	7932581	.	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7932582	7933270	1	-	2	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7932582	7933270	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7933271	7933344	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7933345	7933672	0.63	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7933345	7933672	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7933673	7934175	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7934176	7934238	0.66	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7934176	7934238	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7934239	7934322	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7934323	7934410	1	-	1	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7934323	7934410	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7934411	7934506	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7934507	7934586	1	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7934507	7934586	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7934587	7934679	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7934680	7934775	0.82	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7934680	7934775	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7934776	7934877	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7934878	7934982	0.89	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7934878	7934982	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7934983	7935166	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7935167	7935265	1	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7935167	7935265	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7935266	7935421	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7935422	7935571	1	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7935422	7935571	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7935572	7935687	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7935688	7935780	0.86	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7935688	7935780	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7935781	7935958	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7935959	7936033	1	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7935959	7936033	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7936034	7936140	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7936141	7936212	0.99	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7936141	7936212	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7936213	7936334	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7936335	7936388	1	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7936335	7936388	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7936389	7936535	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7936536	7936627	1	-	2	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7936536	7936627	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7936628	7936724	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7936725	7936853	1	-	2	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7936725	7936853	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7936854	7936974	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7936975	7937080	1	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7936975	7937080	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7937081	7937198	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7937199	7937290	0.86	-	2	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7937199	7937290	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	intron	7937291	7937409	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	CDS	7937410	7937527	0.19	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	exon	7937410	7937527	.	-	.	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
Ledus.S1	AUGUSTUS	start_codon	7937525	7937527	.	-	0	transcript_id "Ledus.S1G079400.t1"; gene_id "Ledus.S1G079400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4276.t1 is derived from g1712.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15911528	15913474	.	+	.	Ledus.S1G169700
Ledus.S1	AUGUSTUS	transcript	15911528	15913474	.	+	.	transcript_id "Ledus.S1G169700.t1"; gene_id "Ledus.S1G169700"
Ledus.S1	AUGUSTUS	start_codon	15911528	15911530	.	+	0	transcript_id "Ledus.S1G169700.t1"; gene_id "Ledus.S1G169700"
Ledus.S1	AUGUSTUS	CDS	15911528	15912143	0.85	+	0	transcript_id "Ledus.S1G169700.t1"; gene_id "Ledus.S1G169700"
Ledus.S1	AUGUSTUS	exon	15911528	15912143	.	+	.	transcript_id "Ledus.S1G169700.t1"; gene_id "Ledus.S1G169700"
Ledus.S1	AUGUSTUS	intron	15912144	15912221	.	+	.	transcript_id "Ledus.S1G169700.t1"; gene_id "Ledus.S1G169700"
Ledus.S1	AUGUSTUS	CDS	15912222	15913474	1	+	2	transcript_id "Ledus.S1G169700.t1"; gene_id "Ledus.S1G169700"
Ledus.S1	AUGUSTUS	exon	15912222	15913474	.	+	.	transcript_id "Ledus.S1G169700.t1"; gene_id "Ledus.S1G169700"
Ledus.S1	AUGUSTUS	stop_codon	15913475	15913477	.	+	0	transcript_id "Ledus.S1G169700.t1"; gene_id "Ledus.S1G169700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12864.t1 is derived from g4437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	76350	78251	.	-	.	Ledus.C10G000700
Ledus.C10	AUGUSTUS	transcript	76350	78251	.	-	.	transcript_id "Ledus.C10G000700.t1"; gene_id "Ledus.C10G000700"
Ledus.C10	AUGUSTUS	stop_codon	76347	76349	.	-	0	transcript_id "Ledus.C10G000700.t1"; gene_id "Ledus.C10G000700"
Ledus.C10	AUGUSTUS	CDS	76350	78251	0.23	-	0	transcript_id "Ledus.C10G000700.t1"; gene_id "Ledus.C10G000700"
Ledus.C10	AUGUSTUS	exon	76350	78251	.	-	.	transcript_id "Ledus.C10G000700.t1"; gene_id "Ledus.C10G000700"
Ledus.C10	AUGUSTUS	start_codon	78249	78251	.	-	0	transcript_id "Ledus.C10G000700.t1"; gene_id "Ledus.C10G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3836.t1 is derived from g1272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12964120	12965865	.	+	.	Ledus.S1G125700
Ledus.S1	AUGUSTUS	transcript	12964120	12965865	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	start_codon	12964120	12964122	.	+	0	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	CDS	12964120	12964190	0.99	+	0	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	exon	12964120	12964190	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	intron	12964191	12964271	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	CDS	12964272	12964330	0.99	+	1	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	exon	12964272	12964330	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	intron	12964331	12964588	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	CDS	12964589	12964641	1	+	2	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	exon	12964589	12964641	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	intron	12964642	12964792	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	CDS	12964793	12964884	1	+	0	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	exon	12964793	12964884	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	intron	12964885	12965018	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	CDS	12965019	12965127	1	+	1	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	exon	12965019	12965127	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	intron	12965128	12965302	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	CDS	12965303	12965338	1	+	0	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	exon	12965303	12965338	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	intron	12965339	12965570	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	CDS	12965571	12965657	1	+	0	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	exon	12965571	12965657	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	intron	12965658	12965796	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	CDS	12965797	12965865	1	+	0	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	exon	12965797	12965865	.	+	.	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
Ledus.S1	AUGUSTUS	stop_codon	12965866	12965868	.	+	0	transcript_id "Ledus.S1G125700.t1"; gene_id "Ledus.S1G125700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5577.t1 is derived from g3016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25228094	25232489	.	-	.	Ledus.S1G299800
Ledus.S1	AUGUSTUS	transcript	25228094	25232489	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	stop_codon	25228091	25228093	.	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25228094	25228240	1	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25228094	25228240	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25228241	25228363	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25228364	25228513	1	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25228364	25228513	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25228514	25228633	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25228634	25228739	0.99	-	1	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25228634	25228739	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25228740	25228844	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25228845	25229173	0.98	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25228845	25229173	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25229174	25229283	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25229284	25229421	1	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25229284	25229421	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25229422	25229554	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25229555	25229635	1	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25229555	25229635	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25229636	25229753	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25229754	25229936	0.99	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25229754	25229936	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25229937	25230056	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25230057	25230252	1	-	1	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25230057	25230252	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25230253	25230350	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25230351	25230457	1	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25230351	25230457	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25230458	25230543	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25230544	25230618	1	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25230544	25230618	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25230619	25230714	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25230715	25230870	0.9	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25230715	25230870	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25230871	25230990	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25230991	25231074	0.99	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25230991	25231074	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25231075	25231167	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25231168	25231281	1	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25231168	25231281	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25231282	25231365	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25231366	25231461	1	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25231366	25231461	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25231462	25231542	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25231543	25231633	1	-	1	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25231543	25231633	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25231634	25231723	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25231724	25231827	1	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25231724	25231827	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25231828	25231915	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25231916	25232189	1	-	1	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25231916	25232189	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	intron	25232190	25232277	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	CDS	25232278	25232489	0.84	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	exon	25232278	25232489	.	-	.	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
Ledus.S1	AUGUSTUS	start_codon	25232487	25232489	.	-	0	transcript_id "Ledus.S1G299800.t1"; gene_id "Ledus.S1G299800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7275.t1 is derived from g11946.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	686975	690202	.	+	.	Ledus.S5G005300
Ledus.S5	AUGUSTUS	transcript	686975	690202	.	+	.	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	start_codon	686975	686977	.	+	0	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	CDS	686975	687025	0.63	+	0	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	exon	686975	687025	.	+	.	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	intron	687026	687313	.	+	.	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	CDS	687314	687382	0.72	+	0	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	exon	687314	687382	.	+	.	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	intron	687383	687506	.	+	.	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	CDS	687507	687662	1	+	0	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	exon	687507	687662	.	+	.	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	intron	687663	687802	.	+	.	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	CDS	687803	690202	0.22	+	0	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	exon	687803	690202	.	+	.	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
Ledus.S5	AUGUSTUS	stop_codon	690203	690205	.	+	0	transcript_id "Ledus.S5G005300.t1"; gene_id "Ledus.S5G005300"
# This transcript jg1497.t1 is derived from g8358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10588352	10588945	.	+	.	Ledus.S2G137900
Ledus.S2	AUGUSTUS	transcript	10588352	10588945	.	+	.	transcript_id "Ledus.S2G137900.t1"; gene_id "Ledus.S2G137900"
Ledus.S2	AUGUSTUS	start_codon	10588352	10588354	.	+	0	transcript_id "Ledus.S2G137900.t1"; gene_id "Ledus.S2G137900"
Ledus.S2	AUGUSTUS	CDS	10588352	10588945	0.72	+	0	transcript_id "Ledus.S2G137900.t1"; gene_id "Ledus.S2G137900"
Ledus.S2	AUGUSTUS	exon	10588352	10588945	.	+	.	transcript_id "Ledus.S2G137900.t1"; gene_id "Ledus.S2G137900"
Ledus.S2	AUGUSTUS	stop_codon	10588946	10588948	.	+	0	transcript_id "Ledus.S2G137900.t1"; gene_id "Ledus.S2G137900"
# This transcript jg208.t2 is derived from g7069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg209.t1 is derived from g7070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	888991	889775	.	-	.	Ledus.S2G009100
Ledus.S2	AUGUSTUS	transcript	888991	889775	.	-	.	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	stop_codon	888988	888990	.	-	0	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	CDS	888991	889117	1	-	1	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	exon	888991	889117	.	-	.	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	intron	889118	889206	.	-	.	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	CDS	889207	889268	1	-	0	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	exon	889207	889268	.	-	.	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	intron	889269	889367	.	-	.	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	CDS	889368	889583	1	-	0	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	exon	889368	889583	.	-	.	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	intron	889584	889658	.	-	.	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	CDS	889659	889775	1	-	0	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	exon	889659	889775	.	-	.	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
Ledus.S2	AUGUSTUS	start_codon	889773	889775	.	-	0	transcript_id "Ledus.S2G009100.t1"; gene_id "Ledus.S2G009100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2439.t1 is derived from g9302.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18114269	18115269	.	-	.	Ledus.S2G232100
Ledus.S2	AUGUSTUS	transcript	18114269	18115269	.	-	.	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	stop_codon	18114266	18114268	.	-	0	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	CDS	18114269	18114390	1	-	2	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	exon	18114269	18114390	.	-	.	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	intron	18114391	18114485	.	-	.	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	CDS	18114486	18114621	1	-	0	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	exon	18114486	18114621	.	-	.	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	intron	18114622	18114714	.	-	.	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	CDS	18114715	18114798	1	-	0	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	exon	18114715	18114798	.	-	.	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	intron	18114799	18114895	.	-	.	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	CDS	18114896	18115032	1	-	2	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	exon	18114896	18115032	.	-	.	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	intron	18115033	18115127	.	-	.	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	CDS	18115128	18115269	0.9	-	0	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	exon	18115128	18115269	.	-	.	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	start_codon	18115267	18115269	.	-	0	transcript_id "Ledus.S2G232100.t1"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	transcript	18114269	18115243	.	-	.	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	stop_codon	18114266	18114268	.	-	0	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	CDS	18114269	18114390	1	-	2	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	exon	18114269	18114390	.	-	.	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	intron	18114391	18114485	.	-	.	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	CDS	18114486	18114621	1	-	0	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	exon	18114486	18114621	.	-	.	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	intron	18114622	18114714	.	-	.	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	CDS	18114715	18114798	1	-	0	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	exon	18114715	18114798	.	-	.	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	intron	18114799	18114895	.	-	.	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	CDS	18114896	18115037	0.83	-	1	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	exon	18114896	18115037	.	-	.	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	intron	18115038	18115127	.	-	.	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	CDS	18115128	18115243	0.47	-	0	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	exon	18115128	18115243	.	-	.	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
Ledus.S2	AUGUSTUS	start_codon	18115241	18115243	.	-	0	transcript_id "Ledus.S2G232100.t2"; gene_id "Ledus.S2G232100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6266.t1 is derived from g3709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29990772	29991107	.	+	.	Ledus.S1G368700
Ledus.S1	AUGUSTUS	transcript	29990772	29991107	.	+	.	transcript_id "Ledus.S1G368700.t1"; gene_id "Ledus.S1G368700"
Ledus.S1	AUGUSTUS	start_codon	29990772	29990774	.	+	0	transcript_id "Ledus.S1G368700.t1"; gene_id "Ledus.S1G368700"
Ledus.S1	AUGUSTUS	CDS	29990772	29991107	0.73	+	0	transcript_id "Ledus.S1G368700.t1"; gene_id "Ledus.S1G368700"
Ledus.S1	AUGUSTUS	exon	29990772	29991107	.	+	.	transcript_id "Ledus.S1G368700.t1"; gene_id "Ledus.S1G368700"
Ledus.S1	AUGUSTUS	stop_codon	29991108	29991110	.	+	0	transcript_id "Ledus.S1G368700.t1"; gene_id "Ledus.S1G368700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9926.t1 is derived from g10956.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11241815	11242493	.	-	.	Ledus.S3G140300
Ledus.S3	AUGUSTUS	transcript	11241815	11242493	.	-	.	transcript_id "Ledus.S3G140300.t1"; gene_id "Ledus.S3G140300"
Ledus.S3	AUGUSTUS	stop_codon	11241812	11241814	.	-	0	transcript_id "Ledus.S3G140300.t1"; gene_id "Ledus.S3G140300"
Ledus.S3	AUGUSTUS	CDS	11241815	11241992	0.96	-	1	transcript_id "Ledus.S3G140300.t1"; gene_id "Ledus.S3G140300"
Ledus.S3	AUGUSTUS	exon	11241815	11241992	.	-	.	transcript_id "Ledus.S3G140300.t1"; gene_id "Ledus.S3G140300"
Ledus.S3	AUGUSTUS	intron	11241993	11242102	.	-	.	transcript_id "Ledus.S3G140300.t1"; gene_id "Ledus.S3G140300"
Ledus.S3	AUGUSTUS	CDS	11242103	11242270	0.93	-	1	transcript_id "Ledus.S3G140300.t1"; gene_id "Ledus.S3G140300"
Ledus.S3	AUGUSTUS	exon	11242103	11242270	.	-	.	transcript_id "Ledus.S3G140300.t1"; gene_id "Ledus.S3G140300"
Ledus.S3	AUGUSTUS	intron	11242271	11242419	.	-	.	transcript_id "Ledus.S3G140300.t1"; gene_id "Ledus.S3G140300"
Ledus.S3	AUGUSTUS	CDS	11242420	11242493	0.4	-	0	transcript_id "Ledus.S3G140300.t1"; gene_id "Ledus.S3G140300"
Ledus.S3	AUGUSTUS	exon	11242420	11242493	.	-	.	transcript_id "Ledus.S3G140300.t1"; gene_id "Ledus.S3G140300"
Ledus.S3	AUGUSTUS	start_codon	11242491	11242493	.	-	0	transcript_id "Ledus.S3G140300.t1"; gene_id "Ledus.S3G140300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9164.t1 is derived from g10194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5186015	5186248	.	+	.	Ledus.S3G064100
Ledus.S3	AUGUSTUS	transcript	5186015	5186248	.	+	.	transcript_id "Ledus.S3G064100.t1"; gene_id "Ledus.S3G064100"
Ledus.S3	AUGUSTUS	start_codon	5186015	5186017	.	+	0	transcript_id "Ledus.S3G064100.t1"; gene_id "Ledus.S3G064100"
Ledus.S3	AUGUSTUS	CDS	5186015	5186248	0.74	+	0	transcript_id "Ledus.S3G064100.t1"; gene_id "Ledus.S3G064100"
Ledus.S3	AUGUSTUS	exon	5186015	5186248	.	+	.	transcript_id "Ledus.S3G064100.t1"; gene_id "Ledus.S3G064100"
Ledus.S3	AUGUSTUS	stop_codon	5186249	5186251	.	+	0	transcript_id "Ledus.S3G064100.t1"; gene_id "Ledus.S3G064100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5534.t1 is derived from g2973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24985034	24985965	.	+	.	Ledus.S1G295500
Ledus.S1	AUGUSTUS	transcript	24985034	24985965	.	+	.	transcript_id "Ledus.S1G295500.t1"; gene_id "Ledus.S1G295500"
Ledus.S1	AUGUSTUS	start_codon	24985034	24985036	.	+	0	transcript_id "Ledus.S1G295500.t1"; gene_id "Ledus.S1G295500"
Ledus.S1	AUGUSTUS	CDS	24985034	24985409	0.89	+	0	transcript_id "Ledus.S1G295500.t1"; gene_id "Ledus.S1G295500"
Ledus.S1	AUGUSTUS	exon	24985034	24985409	.	+	.	transcript_id "Ledus.S1G295500.t1"; gene_id "Ledus.S1G295500"
Ledus.S1	AUGUSTUS	intron	24985410	24985582	.	+	.	transcript_id "Ledus.S1G295500.t1"; gene_id "Ledus.S1G295500"
Ledus.S1	AUGUSTUS	CDS	24985583	24985965	0.43	+	2	transcript_id "Ledus.S1G295500.t1"; gene_id "Ledus.S1G295500"
Ledus.S1	AUGUSTUS	exon	24985583	24985965	.	+	.	transcript_id "Ledus.S1G295500.t1"; gene_id "Ledus.S1G295500"
Ledus.S1	AUGUSTUS	stop_codon	24985966	24985968	.	+	0	transcript_id "Ledus.S1G295500.t1"; gene_id "Ledus.S1G295500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12374.t1 is derived from g5995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11485954	11487600	.	-	.	Ledus.S4G153000
Ledus.S4	AUGUSTUS	transcript	11485954	11487600	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	stop_codon	11485951	11485953	.	-	0	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	CDS	11485954	11486053	0.95	-	1	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	exon	11485954	11486053	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	intron	11486054	11486161	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	CDS	11486162	11486234	0.97	-	2	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	exon	11486162	11486234	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	intron	11486235	11486312	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	CDS	11486313	11486440	1	-	1	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	exon	11486313	11486440	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	intron	11486441	11486527	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	CDS	11486528	11486611	1	-	1	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	exon	11486528	11486611	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	intron	11486612	11486709	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	CDS	11486710	11486806	1	-	2	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	exon	11486710	11486806	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	intron	11486807	11486895	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	CDS	11486896	11486944	1	-	0	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	exon	11486896	11486944	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	intron	11486945	11487017	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	CDS	11487018	11487088	1	-	2	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	exon	11487018	11487088	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	intron	11487089	11487184	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	CDS	11487185	11487309	1	-	1	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	exon	11487185	11487309	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	intron	11487310	11487394	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	CDS	11487395	11487600	0.6	-	0	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	exon	11487395	11487600	.	-	.	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
Ledus.S4	AUGUSTUS	start_codon	11487598	11487600	.	-	0	transcript_id "Ledus.S4G153000.t1"; gene_id "Ledus.S4G153000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10787.t1 is derived from g11819.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17706822	17709890	.	+	.	Ledus.S3G226400
Ledus.S3	AUGUSTUS	transcript	17706822	17709890	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	start_codon	17706822	17706824	.	+	0	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	CDS	17706822	17706926	0.61	+	0	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	exon	17706822	17706926	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	intron	17706927	17707023	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	CDS	17707024	17707156	1	+	0	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	exon	17707024	17707156	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	intron	17707157	17707283	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	CDS	17707284	17707408	1	+	2	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	exon	17707284	17707408	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	intron	17707409	17707590	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	CDS	17707591	17707605	0.53	+	0	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	exon	17707591	17707605	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	intron	17707606	17708182	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	CDS	17708183	17708504	0.74	+	0	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	exon	17708183	17708504	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	intron	17708505	17708584	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	CDS	17708585	17708718	0.96	+	2	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	exon	17708585	17708718	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	intron	17708719	17708825	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	CDS	17708826	17708960	1	+	0	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	exon	17708826	17708960	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	intron	17708961	17709040	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	CDS	17709041	17709223	1	+	0	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	exon	17709041	17709223	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	intron	17709224	17709298	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	CDS	17709299	17709517	0.98	+	0	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	exon	17709299	17709517	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	intron	17709518	17709641	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	CDS	17709642	17709890	1	+	0	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	exon	17709642	17709890	.	+	.	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
Ledus.S3	AUGUSTUS	stop_codon	17709891	17709893	.	+	0	transcript_id "Ledus.S3G226400.t1"; gene_id "Ledus.S3G226400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11709.t1 is derived from g5328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6168531	6170193	.	-	.	Ledus.S4G086500
Ledus.S4	AUGUSTUS	transcript	6168531	6170193	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	stop_codon	6168528	6168530	.	-	0	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	CDS	6168531	6168712	1	-	2	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	exon	6168531	6168712	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	intron	6168713	6168796	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	CDS	6168797	6168987	1	-	1	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	exon	6168797	6168987	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	intron	6168988	6169083	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	CDS	6169084	6169248	1	-	1	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	exon	6169084	6169248	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	intron	6169249	6169340	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	CDS	6169341	6169618	1	-	0	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	exon	6169341	6169618	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	intron	6169619	6169700	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	CDS	6169701	6169850	1	-	0	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	exon	6169701	6169850	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	intron	6169851	6169934	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	CDS	6169935	6170052	0.49	-	1	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	exon	6169935	6170052	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	intron	6170053	6170185	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	CDS	6170186	6170193	0.49	-	0	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	exon	6170186	6170193	.	-	.	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
Ledus.S4	AUGUSTUS	start_codon	6170191	6170193	.	-	0	transcript_id "Ledus.S4G086500.t1"; gene_id "Ledus.S4G086500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7414.t1 is derived from g12085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2146175	2149178	.	+	.	Ledus.S5G019200
Ledus.S5	AUGUSTUS	transcript	2146175	2149178	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	start_codon	2146175	2146177	.	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2146175	2146660	0.42	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2146175	2146660	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	intron	2146661	2146736	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2146737	2146949	1	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2146737	2146949	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	intron	2146950	2147067	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2147068	2147272	1	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2147068	2147272	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	intron	2147273	2147403	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2147404	2147479	1	+	2	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2147404	2147479	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	intron	2147480	2147604	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2147605	2147740	0.78	+	1	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2147605	2147740	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	intron	2147741	2147841	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2147842	2147946	1	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2147842	2147946	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	intron	2147947	2148061	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2148062	2148169	1	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2148062	2148169	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	intron	2148170	2148259	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2148260	2148349	1	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2148260	2148349	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	intron	2148350	2148446	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2148447	2148512	1	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2148447	2148512	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	intron	2148513	2148591	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2148592	2148648	1	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2148592	2148648	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	intron	2148649	2148736	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2148737	2148814	1	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2148737	2148814	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	intron	2148815	2148913	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2148914	2148961	1	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2148914	2148961	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	intron	2148962	2149109	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	CDS	2149110	2149178	0.81	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	exon	2149110	2149178	.	+	.	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
Ledus.S5	AUGUSTUS	stop_codon	2149179	2149181	.	+	0	transcript_id "Ledus.S5G019200.t1"; gene_id "Ledus.S5G019200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3858.t1 is derived from g1294.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13204380	13206034	.	-	.	Ledus.S1G127900
Ledus.S1	AUGUSTUS	transcript	13204380	13206034	.	-	.	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	stop_codon	13204377	13204379	.	-	0	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	CDS	13204380	13204613	0.95	-	0	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	exon	13204380	13204613	.	-	.	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	intron	13204614	13204727	.	-	.	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	CDS	13204728	13205074	0.94	-	2	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	exon	13204728	13205074	.	-	.	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	intron	13205075	13205166	.	-	.	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	CDS	13205167	13205762	1	-	1	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	exon	13205167	13205762	.	-	.	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	intron	13205763	13205849	.	-	.	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	CDS	13205850	13206034	0.93	-	0	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	exon	13205850	13206034	.	-	.	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	start_codon	13206032	13206034	.	-	0	transcript_id "Ledus.S1G127900.t1"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	transcript	13204380	13206034	.	-	.	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	stop_codon	13204377	13204379	.	-	0	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	CDS	13204380	13204613	0.97	-	0	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	exon	13204380	13204613	.	-	.	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	intron	13204614	13204727	.	-	.	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	CDS	13204728	13205074	0.94	-	2	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	exon	13204728	13205074	.	-	.	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	intron	13205075	13205166	.	-	.	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	CDS	13205167	13205765	1	-	1	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	exon	13205167	13205765	.	-	.	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	intron	13205766	13205849	.	-	.	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	CDS	13205850	13206034	0.86	-	0	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	exon	13205850	13206034	.	-	.	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
Ledus.S1	AUGUSTUS	start_codon	13206032	13206034	.	-	0	transcript_id "Ledus.S1G127900.t2"; gene_id "Ledus.S1G127900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11466.t1 is derived from g5084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4493745	4494279	.	-	.	Ledus.S4G062200
Ledus.S4	AUGUSTUS	transcript	4493745	4494279	.	-	.	transcript_id "Ledus.S4G062200.t1"; gene_id "Ledus.S4G062200"
Ledus.S4	AUGUSTUS	stop_codon	4493742	4493744	.	-	0	transcript_id "Ledus.S4G062200.t1"; gene_id "Ledus.S4G062200"
Ledus.S4	AUGUSTUS	CDS	4493745	4493787	0.48	-	1	transcript_id "Ledus.S4G062200.t1"; gene_id "Ledus.S4G062200"
Ledus.S4	AUGUSTUS	exon	4493745	4493787	.	-	.	transcript_id "Ledus.S4G062200.t1"; gene_id "Ledus.S4G062200"
Ledus.S4	AUGUSTUS	intron	4493788	4493906	.	-	.	transcript_id "Ledus.S4G062200.t1"; gene_id "Ledus.S4G062200"
Ledus.S4	AUGUSTUS	CDS	4493907	4494045	0.2	-	2	transcript_id "Ledus.S4G062200.t1"; gene_id "Ledus.S4G062200"
Ledus.S4	AUGUSTUS	exon	4493907	4494045	.	-	.	transcript_id "Ledus.S4G062200.t1"; gene_id "Ledus.S4G062200"
Ledus.S4	AUGUSTUS	intron	4494046	4494128	.	-	.	transcript_id "Ledus.S4G062200.t1"; gene_id "Ledus.S4G062200"
Ledus.S4	AUGUSTUS	CDS	4494129	4494279	0.23	-	0	transcript_id "Ledus.S4G062200.t1"; gene_id "Ledus.S4G062200"
Ledus.S4	AUGUSTUS	exon	4494129	4494279	.	-	.	transcript_id "Ledus.S4G062200.t1"; gene_id "Ledus.S4G062200"
Ledus.S4	AUGUSTUS	start_codon	4494277	4494279	.	-	0	transcript_id "Ledus.S4G062200.t1"; gene_id "Ledus.S4G062200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7422.t1 is derived from g12093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2333382	2333678	.	+	.	Ledus.S5G020000
Ledus.S5	AUGUSTUS	transcript	2333382	2333678	.	+	.	transcript_id "Ledus.S5G020000.t1"; gene_id "Ledus.S5G020000"
Ledus.S5	AUGUSTUS	start_codon	2333382	2333384	.	+	0	transcript_id "Ledus.S5G020000.t1"; gene_id "Ledus.S5G020000"
Ledus.S5	AUGUSTUS	CDS	2333382	2333678	0.88	+	0	transcript_id "Ledus.S5G020000.t1"; gene_id "Ledus.S5G020000"
Ledus.S5	AUGUSTUS	exon	2333382	2333678	.	+	.	transcript_id "Ledus.S5G020000.t1"; gene_id "Ledus.S5G020000"
Ledus.S5	AUGUSTUS	stop_codon	2333679	2333681	.	+	0	transcript_id "Ledus.S5G020000.t1"; gene_id "Ledus.S5G020000"
# This transcript jg1210.t1 is derived from g8070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8606252	8606677	.	+	.	Ledus.S2G109100
Ledus.S2	AUGUSTUS	transcript	8606252	8606677	.	+	.	transcript_id "Ledus.S2G109100.t1"; gene_id "Ledus.S2G109100"
Ledus.S2	AUGUSTUS	start_codon	8606252	8606254	.	+	0	transcript_id "Ledus.S2G109100.t1"; gene_id "Ledus.S2G109100"
Ledus.S2	AUGUSTUS	CDS	8606252	8606677	0.59	+	0	transcript_id "Ledus.S2G109100.t1"; gene_id "Ledus.S2G109100"
Ledus.S2	AUGUSTUS	exon	8606252	8606677	.	+	.	transcript_id "Ledus.S2G109100.t1"; gene_id "Ledus.S2G109100"
Ledus.S2	AUGUSTUS	stop_codon	8606678	8606680	.	+	0	transcript_id "Ledus.S2G109100.t1"; gene_id "Ledus.S2G109100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12777.t1 is derived from g6399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14439605	14441771	.	-	.	Ledus.S4G193300
Ledus.S4	AUGUSTUS	transcript	14439605	14441771	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	stop_codon	14439602	14439604	.	-	0	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	CDS	14439605	14440226	0.99	-	1	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	exon	14439605	14440226	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	intron	14440227	14440319	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	CDS	14440320	14440557	0.99	-	2	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	exon	14440320	14440557	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	intron	14440558	14440651	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	CDS	14440652	14440745	1	-	0	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	exon	14440652	14440745	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	intron	14440746	14440861	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	CDS	14440862	14440957	1	-	0	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	exon	14440862	14440957	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	intron	14440958	14441178	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	CDS	14441179	14441279	1	-	2	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	exon	14441179	14441279	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	intron	14441280	14441425	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	CDS	14441426	14441456	0.66	-	0	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	exon	14441426	14441456	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	intron	14441457	14441569	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	CDS	14441570	14441656	1	-	0	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	exon	14441570	14441656	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	intron	14441657	14441747	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	CDS	14441748	14441771	0.79	-	0	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	exon	14441748	14441771	.	-	.	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
Ledus.S4	AUGUSTUS	start_codon	14441769	14441771	.	-	0	transcript_id "Ledus.S4G193300.t1"; gene_id "Ledus.S4G193300"
# This transcript jg9547.t2 is derived from g10577.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9548.t1 is derived from g10578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7744762	7745457	.	-	.	Ledus.S3G102500
Ledus.S3	AUGUSTUS	transcript	7744762	7745457	.	-	.	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	stop_codon	7744759	7744761	.	-	0	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	CDS	7744762	7744898	1	-	2	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	exon	7744762	7744898	.	-	.	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	intron	7744899	7744993	.	-	.	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	CDS	7744994	7745074	0.7	-	2	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	exon	7744994	7745074	.	-	.	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	intron	7745075	7745181	.	-	.	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	CDS	7745182	7745253	0.7	-	2	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	exon	7745182	7745253	.	-	.	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	intron	7745254	7745348	.	-	.	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	CDS	7745349	7745457	1	-	0	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	exon	7745349	7745457	.	-	.	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
Ledus.S3	AUGUSTUS	start_codon	7745455	7745457	.	-	0	transcript_id "Ledus.S3G102500.t1"; gene_id "Ledus.S3G102500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4954.t1 is derived from g2392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20868076	20868444	.	-	.	Ledus.S1G237500
Ledus.S1	AUGUSTUS	transcript	20868076	20868444	.	-	.	transcript_id "Ledus.S1G237500.t1"; gene_id "Ledus.S1G237500"
Ledus.S1	AUGUSTUS	stop_codon	20868073	20868075	.	-	0	transcript_id "Ledus.S1G237500.t1"; gene_id "Ledus.S1G237500"
Ledus.S1	AUGUSTUS	CDS	20868076	20868145	0.85	-	1	transcript_id "Ledus.S1G237500.t1"; gene_id "Ledus.S1G237500"
Ledus.S1	AUGUSTUS	exon	20868076	20868145	.	-	.	transcript_id "Ledus.S1G237500.t1"; gene_id "Ledus.S1G237500"
Ledus.S1	AUGUSTUS	intron	20868146	20868307	.	-	.	transcript_id "Ledus.S1G237500.t1"; gene_id "Ledus.S1G237500"
Ledus.S1	AUGUSTUS	CDS	20868308	20868444	0.99	-	0	transcript_id "Ledus.S1G237500.t1"; gene_id "Ledus.S1G237500"
Ledus.S1	AUGUSTUS	exon	20868308	20868444	.	-	.	transcript_id "Ledus.S1G237500.t1"; gene_id "Ledus.S1G237500"
Ledus.S1	AUGUSTUS	start_codon	20868442	20868444	.	-	0	transcript_id "Ledus.S1G237500.t1"; gene_id "Ledus.S1G237500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9770.t1 is derived from g10800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9699912	9701588	.	+	.	Ledus.S3G124700
Ledus.S3	AUGUSTUS	transcript	9699912	9701588	.	+	.	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	start_codon	9699912	9699914	.	+	0	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	CDS	9699912	9699989	0.91	+	0	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	exon	9699912	9699989	.	+	.	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	intron	9699990	9700213	.	+	.	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	CDS	9700214	9700341	1	+	0	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	exon	9700214	9700341	.	+	.	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	intron	9700342	9700423	.	+	.	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	CDS	9700424	9700680	1	+	1	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	exon	9700424	9700680	.	+	.	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	intron	9700681	9700769	.	+	.	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	CDS	9700770	9701218	0.99	+	2	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	exon	9700770	9701218	.	+	.	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	intron	9701219	9701303	.	+	.	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	CDS	9701304	9701588	1	+	0	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	exon	9701304	9701588	.	+	.	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
Ledus.S3	AUGUSTUS	stop_codon	9701589	9701591	.	+	0	transcript_id "Ledus.S3G124700.t1"; gene_id "Ledus.S3G124700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4193.t1 is derived from g1629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15315057	15316235	.	-	.	Ledus.S1G161400
Ledus.S1	AUGUSTUS	transcript	15315057	15316235	.	-	.	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	stop_codon	15315054	15315056	.	-	0	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	CDS	15315057	15315286	0.98	-	2	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	exon	15315057	15315286	.	-	.	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	intron	15315287	15315422	.	-	.	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	CDS	15315423	15315529	1	-	1	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	exon	15315423	15315529	.	-	.	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	intron	15315530	15315604	.	-	.	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	CDS	15315605	15315906	0.62	-	0	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	exon	15315605	15315906	.	-	.	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	intron	15315907	15316046	.	-	.	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	CDS	15316047	15316235	0.37	-	0	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	exon	15316047	15316235	.	-	.	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
Ledus.S1	AUGUSTUS	start_codon	15316233	15316235	.	-	0	transcript_id "Ledus.S1G161400.t1"; gene_id "Ledus.S1G161400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7982.t1 is derived from g12653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8319785	8320766	.	+	.	Ledus.S5G076000
Ledus.S5	AUGUSTUS	transcript	8319785	8320766	.	+	.	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	start_codon	8319785	8319787	.	+	0	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	CDS	8319785	8319910	1	+	0	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	exon	8319785	8319910	.	+	.	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	intron	8319911	8320063	.	+	.	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	CDS	8320064	8320219	1	+	0	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	exon	8320064	8320219	.	+	.	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	intron	8320220	8320308	.	+	.	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	CDS	8320309	8320458	1	+	0	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	exon	8320309	8320458	.	+	.	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	intron	8320459	8320550	.	+	.	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	CDS	8320551	8320766	0.99	+	0	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	exon	8320551	8320766	.	+	.	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
Ledus.S5	AUGUSTUS	stop_codon	8320767	8320769	.	+	0	transcript_id "Ledus.S5G076000.t1"; gene_id "Ledus.S5G076000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4988.t1 is derived from g2426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21002244	21004832	.	+	.	Ledus.S1G240900
Ledus.S1	AUGUSTUS	transcript	21002244	21004832	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	start_codon	21002244	21002246	.	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21002244	21002348	1	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21002244	21002348	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	intron	21002349	21002471	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21002472	21002564	1	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21002472	21002564	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	intron	21002565	21002648	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21002649	21002708	1	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21002649	21002708	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	intron	21002709	21002787	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21002788	21003060	1	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21002788	21003060	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	intron	21003061	21003146	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21003147	21003221	1	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21003147	21003221	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	intron	21003222	21003338	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21003339	21003395	1	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21003339	21003395	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	intron	21003396	21003495	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21003496	21003636	1	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21003496	21003636	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	intron	21003637	21003733	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21003734	21003784	0.99	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21003734	21003784	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	intron	21003785	21003887	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21003888	21003983	0.99	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21003888	21003983	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	intron	21003984	21004079	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21004080	21004163	1	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21004080	21004163	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	intron	21004164	21004305	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21004306	21004408	0.96	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21004306	21004408	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	intron	21004409	21004524	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21004525	21004599	0.43	+	2	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21004525	21004599	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	intron	21004600	21004770	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	CDS	21004771	21004832	0.48	+	2	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	exon	21004771	21004832	.	+	.	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
Ledus.S1	AUGUSTUS	stop_codon	21004833	21004835	.	+	0	transcript_id "Ledus.S1G240900.t1"; gene_id "Ledus.S1G240900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3661.t1 is derived from g1097.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10536753	10542959	.	+	.	Ledus.S1G108200
Ledus.S1	AUGUSTUS	transcript	10536753	10542959	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	start_codon	10536753	10536755	.	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10536753	10536794	0.65	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10536753	10536794	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10536795	10536886	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10536887	10536930	0.98	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10536887	10536930	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10536931	10537015	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10537016	10537367	0.99	+	1	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10537016	10537367	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10537368	10537504	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10537505	10537590	1	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10537505	10537590	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10537591	10537740	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10537741	10537842	1	+	1	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10537741	10537842	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10537843	10537966	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10537967	10538073	1	+	1	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10537967	10538073	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10538074	10538329	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10538330	10538430	1	+	2	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10538330	10538430	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10538431	10538591	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10538592	10538679	1	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10538592	10538679	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10538680	10539243	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10539244	10539332	1	+	2	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10539244	10539332	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10539333	10539544	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10539545	10539684	1	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10539545	10539684	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10539685	10539786	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10539787	10539946	1	+	1	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10539787	10539946	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10539947	10540092	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10540093	10540122	0.48	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10540093	10540122	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10540123	10540352	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10540353	10540435	0.5	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10540353	10540435	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10540436	10540607	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10540608	10540719	1	+	1	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10540608	10540719	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10540720	10540857	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10540858	10540917	0.66	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10540858	10540917	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10540918	10541039	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10541040	10541158	0.66	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10541040	10541158	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10541159	10541279	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10541280	10541404	1	+	1	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10541280	10541404	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10541405	10541524	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10541525	10541749	1	+	2	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10541525	10541749	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10541750	10541921	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10541922	10542079	1	+	2	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10541922	10542079	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10542080	10542216	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10542217	10542380	0.99	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10542217	10542380	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10542381	10542466	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10542467	10542567	0.94	+	1	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10542467	10542567	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10542568	10542650	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10542651	10542733	1	+	2	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10542651	10542733	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10542734	10542818	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10542819	10542959	1	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10542819	10542959	.	+	.	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	stop_codon	10542960	10542962	.	+	0	transcript_id "Ledus.S1G108200.t1"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	transcript	10536753	10542959	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	start_codon	10536753	10536755	.	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10536753	10536794	0.51	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10536753	10536794	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10536795	10536886	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10536887	10536924	0.88	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10536887	10536924	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10536925	10537015	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10537016	10537367	0.9	+	1	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10537016	10537367	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10537368	10537504	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10537505	10537590	1	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10537505	10537590	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10537591	10537740	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10537741	10537842	1	+	1	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10537741	10537842	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10537843	10537966	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10537967	10538073	1	+	1	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10537967	10538073	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10538074	10538329	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10538330	10538430	1	+	2	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10538330	10538430	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10538431	10538591	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10538592	10538679	1	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10538592	10538679	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10538680	10539243	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10539244	10539332	1	+	2	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10539244	10539332	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10539333	10539544	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10539545	10539684	1	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10539545	10539684	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10539685	10539786	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10539787	10539946	1	+	1	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10539787	10539946	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10539947	10540092	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10540093	10540122	0.46	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10540093	10540122	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10540123	10540352	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10540353	10540435	0.48	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10540353	10540435	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10540436	10540607	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10540608	10540719	1	+	1	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10540608	10540719	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10540720	10540857	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10540858	10540917	0.65	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10540858	10540917	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10540918	10541039	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10541040	10541158	0.67	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10541040	10541158	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10541159	10541279	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10541280	10541404	1	+	1	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10541280	10541404	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10541405	10541524	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10541525	10541749	1	+	2	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10541525	10541749	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10541750	10541921	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10541922	10542079	1	+	2	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10541922	10542079	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10542080	10542216	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10542217	10542380	0.99	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10542217	10542380	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10542381	10542466	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10542467	10542567	0.93	+	1	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10542467	10542567	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10542568	10542650	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10542651	10542733	1	+	2	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10542651	10542733	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	intron	10542734	10542818	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	CDS	10542819	10542959	1	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	exon	10542819	10542959	.	+	.	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
Ledus.S1	AUGUSTUS	stop_codon	10542960	10542962	.	+	0	transcript_id "Ledus.S1G108200.t2"; gene_id "Ledus.S1G108200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9085.t1 is derived from g10115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4449783	4451870	.	+	.	Ledus.S3G056200
Ledus.S3	AUGUSTUS	transcript	4449783	4451870	.	+	.	transcript_id "Ledus.S3G056200.t1"; gene_id "Ledus.S3G056200"
Ledus.S3	AUGUSTUS	start_codon	4449783	4449785	.	+	0	transcript_id "Ledus.S3G056200.t1"; gene_id "Ledus.S3G056200"
Ledus.S3	AUGUSTUS	CDS	4449783	4451870	0.55	+	0	transcript_id "Ledus.S3G056200.t1"; gene_id "Ledus.S3G056200"
Ledus.S3	AUGUSTUS	exon	4449783	4451870	.	+	.	transcript_id "Ledus.S3G056200.t1"; gene_id "Ledus.S3G056200"
Ledus.S3	AUGUSTUS	stop_codon	4451871	4451873	.	+	0	transcript_id "Ledus.S3G056200.t1"; gene_id "Ledus.S3G056200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2577.t1 is derived from g9440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19192414	19196164	.	+	.	Ledus.S2G245900
Ledus.S2	AUGUSTUS	transcript	19192414	19196164	.	+	.	transcript_id "Ledus.S2G245900.t1"; gene_id "Ledus.S2G245900"
Ledus.S2	AUGUSTUS	start_codon	19192414	19192416	.	+	0	transcript_id "Ledus.S2G245900.t1"; gene_id "Ledus.S2G245900"
Ledus.S2	AUGUSTUS	CDS	19192414	19195911	0.5	+	0	transcript_id "Ledus.S2G245900.t1"; gene_id "Ledus.S2G245900"
Ledus.S2	AUGUSTUS	exon	19192414	19195911	.	+	.	transcript_id "Ledus.S2G245900.t1"; gene_id "Ledus.S2G245900"
Ledus.S2	AUGUSTUS	intron	19195912	19195981	.	+	.	transcript_id "Ledus.S2G245900.t1"; gene_id "Ledus.S2G245900"
Ledus.S2	AUGUSTUS	CDS	19195982	19196164	0.48	+	0	transcript_id "Ledus.S2G245900.t1"; gene_id "Ledus.S2G245900"
Ledus.S2	AUGUSTUS	exon	19195982	19196164	.	+	.	transcript_id "Ledus.S2G245900.t1"; gene_id "Ledus.S2G245900"
Ledus.S2	AUGUSTUS	stop_codon	19196165	19196167	.	+	0	transcript_id "Ledus.S2G245900.t1"; gene_id "Ledus.S2G245900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4742.t1 is derived from g2180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19502679	19508797	.	+	.	Ledus.S1G216300
Ledus.S1	AUGUSTUS	transcript	19502679	19508797	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	start_codon	19502679	19502681	.	+	0	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19502679	19502826	0.56	+	0	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19502679	19502826	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19502827	19503043	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19503044	19503192	1	+	2	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19503044	19503192	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19503193	19503365	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19503366	19504118	1	+	0	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19503366	19504118	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19504119	19504257	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19504258	19504673	0.94	+	0	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19504258	19504673	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19504674	19504887	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19504888	19505051	0.94	+	1	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19504888	19505051	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19505052	19505257	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19505258	19505293	1	+	2	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19505258	19505293	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19505294	19505426	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19505427	19505438	1	+	2	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19505427	19505438	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19505439	19505518	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19505519	19505553	1	+	2	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19505519	19505553	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19505554	19505825	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19505826	19505953	1	+	0	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19505826	19505953	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19505954	19506172	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19506173	19506234	1	+	1	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19506173	19506234	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19506235	19506499	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19506500	19506538	1	+	2	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19506500	19506538	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19506539	19506652	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19506653	19506753	1	+	2	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19506653	19506753	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19506754	19506849	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19506850	19506959	1	+	0	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19506850	19506959	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19506960	19507192	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19507193	19507292	1	+	1	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19507193	19507292	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19507293	19507442	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19507443	19507589	1	+	0	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19507443	19507589	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19507590	19507674	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19507675	19507735	1	+	0	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19507675	19507735	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19507736	19507831	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19507832	19507929	1	+	2	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19507832	19507929	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19507930	19508063	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19508064	19508206	1	+	0	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19508064	19508206	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19508207	19508296	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19508297	19508380	1	+	1	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19508297	19508380	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19508381	19508522	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19508523	19508612	1	+	1	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19508523	19508612	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	intron	19508613	19508736	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	CDS	19508737	19508797	1	+	1	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	exon	19508737	19508797	.	+	.	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
Ledus.S1	AUGUSTUS	stop_codon	19508798	19508800	.	+	0	transcript_id "Ledus.S1G216300.t1"; gene_id "Ledus.S1G216300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10497.t1 is derived from g11527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15623661	15626285	.	+	.	Ledus.S3G197400
Ledus.S3	AUGUSTUS	transcript	15623661	15626285	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	start_codon	15623661	15623663	.	+	0	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	CDS	15623661	15623930	0.99	+	0	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	exon	15623661	15623930	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	intron	15623931	15624157	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	CDS	15624158	15624190	1	+	0	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	exon	15624158	15624190	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	intron	15624191	15624321	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	CDS	15624322	15624510	1	+	0	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	exon	15624322	15624510	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	intron	15624511	15624602	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	CDS	15624603	15624665	1	+	0	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	exon	15624603	15624665	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	intron	15624666	15624907	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	CDS	15624908	15625108	1	+	0	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	exon	15624908	15625108	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	intron	15625109	15625241	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	CDS	15625242	15625472	0.97	+	0	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	exon	15625242	15625472	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	intron	15625473	15625565	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	CDS	15625566	15625600	0.82	+	0	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	exon	15625566	15625600	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	intron	15625601	15625750	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	CDS	15625751	15625835	0.79	+	1	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	exon	15625751	15625835	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	intron	15625836	15626180	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	CDS	15626181	15626285	0.97	+	0	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	exon	15626181	15626285	.	+	.	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
Ledus.S3	AUGUSTUS	stop_codon	15626286	15626288	.	+	0	transcript_id "Ledus.S3G197400.t1"; gene_id "Ledus.S3G197400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1036.t1 is derived from g7897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6892276	6894951	.	-	.	Ledus.S2G091800
Ledus.S2	AUGUSTUS	transcript	6892276	6894951	.	-	.	transcript_id "Ledus.S2G091800.t1"; gene_id "Ledus.S2G091800"
Ledus.S2	AUGUSTUS	stop_codon	6892273	6892275	.	-	0	transcript_id "Ledus.S2G091800.t1"; gene_id "Ledus.S2G091800"
Ledus.S2	AUGUSTUS	CDS	6892276	6894951	0.82	-	0	transcript_id "Ledus.S2G091800.t1"; gene_id "Ledus.S2G091800"
Ledus.S2	AUGUSTUS	exon	6892276	6894951	.	-	.	transcript_id "Ledus.S2G091800.t1"; gene_id "Ledus.S2G091800"
Ledus.S2	AUGUSTUS	start_codon	6894949	6894951	.	-	0	transcript_id "Ledus.S2G091800.t1"; gene_id "Ledus.S2G091800"
# This transcript jg697.t2 is derived from g7558.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg698.t1 is derived from g7559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4291287	4293606	.	+	.	Ledus.S2G058000
Ledus.S2	AUGUSTUS	transcript	4291287	4293606	.	+	.	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	start_codon	4291287	4291289	.	+	0	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	CDS	4291287	4291814	0.68	+	0	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	exon	4291287	4291814	.	+	.	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	intron	4291815	4292090	.	+	.	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	CDS	4292091	4292116	1	+	0	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	exon	4292091	4292116	.	+	.	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	intron	4292117	4292230	.	+	.	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	CDS	4292231	4292317	1	+	1	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	exon	4292231	4292317	.	+	.	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	intron	4292318	4292421	.	+	.	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	CDS	4292422	4293315	0.85	+	1	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	exon	4292422	4293315	.	+	.	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	intron	4293316	4293400	.	+	.	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	CDS	4293401	4293461	1	+	1	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	exon	4293401	4293461	.	+	.	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	intron	4293462	4293561	.	+	.	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	CDS	4293562	4293606	0.38	+	0	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	exon	4293562	4293606	.	+	.	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
Ledus.S2	AUGUSTUS	stop_codon	4293607	4293609	.	+	0	transcript_id "Ledus.S2G058000.t1"; gene_id "Ledus.S2G058000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3797.t1 is derived from g1233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12306328	12307746	.	-	.	Ledus.S1G121800
Ledus.S1	AUGUSTUS	transcript	12306328	12307746	.	-	.	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	stop_codon	12306325	12306327	.	-	0	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	CDS	12306328	12306593	0.99	-	2	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	exon	12306328	12306593	.	-	.	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	intron	12306594	12306670	.	-	.	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	CDS	12306671	12306767	1	-	0	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	exon	12306671	12306767	.	-	.	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	intron	12306768	12306839	.	-	.	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	CDS	12306840	12307097	1	-	0	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	exon	12306840	12307097	.	-	.	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	intron	12307098	12307191	.	-	.	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	CDS	12307192	12307419	1	-	0	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	exon	12307192	12307419	.	-	.	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	intron	12307420	12307503	.	-	.	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	CDS	12307504	12307746	0.97	-	0	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	exon	12307504	12307746	.	-	.	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
Ledus.S1	AUGUSTUS	start_codon	12307744	12307746	.	-	0	transcript_id "Ledus.S1G121800.t1"; gene_id "Ledus.S1G121800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8168.t1 is derived from g12839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9589613	9590278	.	+	.	Ledus.S5G094600
Ledus.S5	AUGUSTUS	transcript	9589613	9590278	.	+	.	transcript_id "Ledus.S5G094600.t1"; gene_id "Ledus.S5G094600"
Ledus.S5	AUGUSTUS	start_codon	9589613	9589615	.	+	0	transcript_id "Ledus.S5G094600.t1"; gene_id "Ledus.S5G094600"
Ledus.S5	AUGUSTUS	CDS	9589613	9590278	0.24	+	0	transcript_id "Ledus.S5G094600.t1"; gene_id "Ledus.S5G094600"
Ledus.S5	AUGUSTUS	exon	9589613	9590278	.	+	.	transcript_id "Ledus.S5G094600.t1"; gene_id "Ledus.S5G094600"
Ledus.S5	AUGUSTUS	stop_codon	9590279	9590281	.	+	0	transcript_id "Ledus.S5G094600.t1"; gene_id "Ledus.S5G094600"
# This transcript jg7076.t2 is derived from g6607.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7077.t1 is derived from g6608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1281239	1284339	.	+	.	Ledus.C7G013800
Ledus.C7	AUGUSTUS	transcript	1281239	1284339	.	+	.	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	start_codon	1281239	1281241	.	+	0	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	CDS	1281239	1281374	0.84	+	0	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	exon	1281239	1281374	.	+	.	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	intron	1281375	1281467	.	+	.	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	CDS	1281468	1281559	1	+	2	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	exon	1281468	1281559	.	+	.	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	intron	1281560	1281741	.	+	.	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	CDS	1281742	1283438	0.95	+	0	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	exon	1281742	1283438	.	+	.	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	intron	1283439	1283530	.	+	.	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	CDS	1283531	1283559	1	+	1	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	exon	1283531	1283559	.	+	.	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	intron	1283560	1283650	.	+	.	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	CDS	1283651	1283665	0.99	+	2	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	exon	1283651	1283665	.	+	.	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	intron	1283666	1283758	.	+	.	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	CDS	1283759	1284339	0.98	+	2	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	exon	1283759	1284339	.	+	.	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
Ledus.C7	AUGUSTUS	stop_codon	1284340	1284342	.	+	0	transcript_id "Ledus.C7G013800.t1"; gene_id "Ledus.C7G013800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg373.t1 is derived from g7234.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2008157	2008867	.	-	.	Ledus.S2G025500
Ledus.S2	AUGUSTUS	transcript	2008157	2008867	.	-	.	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	stop_codon	2008154	2008156	.	-	0	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	CDS	2008157	2008315	1	-	0	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	exon	2008157	2008315	.	-	.	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	intron	2008316	2008410	.	-	.	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	CDS	2008411	2008469	1	-	2	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	exon	2008411	2008469	.	-	.	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	intron	2008470	2008559	.	-	.	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	CDS	2008560	2008630	0.98	-	1	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	exon	2008560	2008630	.	-	.	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	intron	2008631	2008712	.	-	.	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	CDS	2008713	2008867	0.91	-	0	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	exon	2008713	2008867	.	-	.	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	start_codon	2008865	2008867	.	-	0	transcript_id "Ledus.S2G025500.t1"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	transcript	2008157	2008867	.	-	.	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	stop_codon	2008154	2008156	.	-	0	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	CDS	2008157	2008315	1	-	0	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	exon	2008157	2008315	.	-	.	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	intron	2008316	2008410	.	-	.	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	CDS	2008411	2008466	0.99	-	2	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	exon	2008411	2008466	.	-	.	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	intron	2008467	2008559	.	-	.	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	CDS	2008560	2008630	0.97	-	1	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	exon	2008560	2008630	.	-	.	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	intron	2008631	2008712	.	-	.	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	CDS	2008713	2008867	0.88	-	0	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	exon	2008713	2008867	.	-	.	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
Ledus.S2	AUGUSTUS	start_codon	2008865	2008867	.	-	0	transcript_id "Ledus.S2G025500.t2"; gene_id "Ledus.S2G025500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1257.t1 is derived from g8118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8935836	8937391	.	+	.	Ledus.S2G113900
Ledus.S2	AUGUSTUS	transcript	8935836	8937391	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	start_codon	8935836	8935838	.	+	0	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	CDS	8935836	8936285	1	+	0	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	exon	8935836	8936285	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	intron	8936286	8936371	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	CDS	8936372	8936431	1	+	0	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	exon	8936372	8936431	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	intron	8936432	8936563	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	CDS	8936564	8936677	1	+	0	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	exon	8936564	8936677	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	intron	8936678	8936752	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	CDS	8936753	8936872	1	+	0	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	exon	8936753	8936872	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	intron	8936873	8936975	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	CDS	8936976	8937042	1	+	0	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	exon	8936976	8937042	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	intron	8937043	8937117	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	CDS	8937118	8937242	1	+	2	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	exon	8937118	8937242	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	intron	8937243	8937337	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	CDS	8937338	8937391	0.95	+	0	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	exon	8937338	8937391	.	+	.	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
Ledus.S2	AUGUSTUS	stop_codon	8937392	8937394	.	+	0	transcript_id "Ledus.S2G113900.t1"; gene_id "Ledus.S2G113900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2474.t1 is derived from g9337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18365014	18366106	.	+	.	Ledus.S2G235600
Ledus.S2	AUGUSTUS	transcript	18365014	18366106	.	+	.	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	start_codon	18365014	18365016	.	+	0	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	CDS	18365014	18365444	0.79	+	0	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	exon	18365014	18365444	.	+	.	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	intron	18365445	18365522	.	+	.	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	CDS	18365523	18365554	1	+	1	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	exon	18365523	18365554	.	+	.	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	intron	18365555	18365631	.	+	.	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	CDS	18365632	18365819	1	+	2	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	exon	18365632	18365819	.	+	.	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	intron	18365820	18365914	.	+	.	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	CDS	18365915	18366106	1	+	0	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	exon	18365915	18366106	.	+	.	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
Ledus.S2	AUGUSTUS	stop_codon	18366107	18366109	.	+	0	transcript_id "Ledus.S2G235600.t1"; gene_id "Ledus.S2G235600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10853.t1 is derived from g4471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	105970	107216	.	+	.	Ledus.S4G000900
Ledus.S4	AUGUSTUS	transcript	105970	107216	.	+	.	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	start_codon	105970	105972	.	+	0	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	CDS	105970	106009	0.99	+	0	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	exon	105970	106009	.	+	.	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	intron	106010	106125	.	+	.	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	CDS	106126	106170	1	+	2	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	exon	106126	106170	.	+	.	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	intron	106171	106287	.	+	.	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	CDS	106288	106320	1	+	2	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	exon	106288	106320	.	+	.	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	intron	106321	106418	.	+	.	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	CDS	106419	106575	0.7	+	2	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	exon	106419	106575	.	+	.	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	intron	106576	106780	.	+	.	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	CDS	106781	107216	0.42	+	1	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	exon	106781	107216	.	+	.	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
Ledus.S4	AUGUSTUS	stop_codon	107217	107219	.	+	0	transcript_id "Ledus.S4G000900.t1"; gene_id "Ledus.S4G000900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12200.t1 is derived from g5819.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10268065	10269575	.	+	.	Ledus.S4G135600
Ledus.S4	AUGUSTUS	transcript	10268065	10269575	.	+	.	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	start_codon	10268065	10268067	.	+	0	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	CDS	10268065	10268228	1	+	0	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	exon	10268065	10268228	.	+	.	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	intron	10268229	10268600	.	+	.	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	CDS	10268601	10268724	1	+	1	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	exon	10268601	10268724	.	+	.	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	intron	10268725	10268851	.	+	.	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	CDS	10268852	10268969	1	+	0	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	exon	10268852	10268969	.	+	.	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	intron	10268970	10269135	.	+	.	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	CDS	10269136	10269195	1	+	2	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	exon	10269136	10269195	.	+	.	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	intron	10269196	10269321	.	+	.	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	CDS	10269322	10269413	1	+	2	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	exon	10269322	10269413	.	+	.	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	intron	10269414	10269512	.	+	.	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	CDS	10269513	10269575	0.98	+	0	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	exon	10269513	10269575	.	+	.	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
Ledus.S4	AUGUSTUS	stop_codon	10269576	10269578	.	+	0	transcript_id "Ledus.S4G135600.t1"; gene_id "Ledus.S4G135600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1159.t1 is derived from g8020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7987837	7988499	.	+	.	Ledus.S2G104100
Ledus.S2	AUGUSTUS	transcript	7987837	7988499	.	+	.	transcript_id "Ledus.S2G104100.t1"; gene_id "Ledus.S2G104100"
Ledus.S2	AUGUSTUS	start_codon	7987837	7987839	.	+	0	transcript_id "Ledus.S2G104100.t1"; gene_id "Ledus.S2G104100"
Ledus.S2	AUGUSTUS	CDS	7987837	7988184	0.86	+	0	transcript_id "Ledus.S2G104100.t1"; gene_id "Ledus.S2G104100"
Ledus.S2	AUGUSTUS	exon	7987837	7988184	.	+	.	transcript_id "Ledus.S2G104100.t1"; gene_id "Ledus.S2G104100"
Ledus.S2	AUGUSTUS	intron	7988185	7988286	.	+	.	transcript_id "Ledus.S2G104100.t1"; gene_id "Ledus.S2G104100"
Ledus.S2	AUGUSTUS	CDS	7988287	7988331	0.5	+	0	transcript_id "Ledus.S2G104100.t1"; gene_id "Ledus.S2G104100"
Ledus.S2	AUGUSTUS	exon	7988287	7988331	.	+	.	transcript_id "Ledus.S2G104100.t1"; gene_id "Ledus.S2G104100"
Ledus.S2	AUGUSTUS	intron	7988332	7988424	.	+	.	transcript_id "Ledus.S2G104100.t1"; gene_id "Ledus.S2G104100"
Ledus.S2	AUGUSTUS	CDS	7988425	7988499	0.99	+	0	transcript_id "Ledus.S2G104100.t1"; gene_id "Ledus.S2G104100"
Ledus.S2	AUGUSTUS	exon	7988425	7988499	.	+	.	transcript_id "Ledus.S2G104100.t1"; gene_id "Ledus.S2G104100"
Ledus.S2	AUGUSTUS	stop_codon	7988500	7988502	.	+	0	transcript_id "Ledus.S2G104100.t1"; gene_id "Ledus.S2G104100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6318.t1 is derived from g3761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30474882	30476223	.	+	.	Ledus.S1G373900
Ledus.S1	AUGUSTUS	transcript	30474882	30476223	.	+	.	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	start_codon	30474882	30474884	.	+	0	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	CDS	30474882	30474976	1	+	0	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	exon	30474882	30474976	.	+	.	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	intron	30474977	30475117	.	+	.	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	CDS	30475118	30475275	1	+	1	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	exon	30475118	30475275	.	+	.	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	intron	30475276	30475356	.	+	.	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	CDS	30475357	30475448	0.83	+	2	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	exon	30475357	30475448	.	+	.	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	intron	30475449	30475606	.	+	.	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	CDS	30475607	30475744	0.92	+	0	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	exon	30475607	30475744	.	+	.	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	intron	30475745	30475831	.	+	.	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	CDS	30475832	30475933	1	+	0	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	exon	30475832	30475933	.	+	.	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	intron	30475934	30476013	.	+	.	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	CDS	30476014	30476223	1	+	0	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	exon	30476014	30476223	.	+	.	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
Ledus.S1	AUGUSTUS	stop_codon	30476224	30476226	.	+	0	transcript_id "Ledus.S1G373900.t1"; gene_id "Ledus.S1G373900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6916.t1 is derived from g4360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35264565	35264789	.	+	.	Ledus.S1G433700
Ledus.S1	AUGUSTUS	transcript	35264565	35264789	.	+	.	transcript_id "Ledus.S1G433700.t1"; gene_id "Ledus.S1G433700"
Ledus.S1	AUGUSTUS	start_codon	35264565	35264567	.	+	0	transcript_id "Ledus.S1G433700.t1"; gene_id "Ledus.S1G433700"
Ledus.S1	AUGUSTUS	CDS	35264565	35264789	0.78	+	0	transcript_id "Ledus.S1G433700.t1"; gene_id "Ledus.S1G433700"
Ledus.S1	AUGUSTUS	exon	35264565	35264789	.	+	.	transcript_id "Ledus.S1G433700.t1"; gene_id "Ledus.S1G433700"
Ledus.S1	AUGUSTUS	stop_codon	35264790	35264792	.	+	0	transcript_id "Ledus.S1G433700.t1"; gene_id "Ledus.S1G433700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12809.t1 is derived from g6431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14900408	14900833	.	-	.	Ledus.S4G196500
Ledus.S4	AUGUSTUS	transcript	14900408	14900833	.	-	.	transcript_id "Ledus.S4G196500.t1"; gene_id "Ledus.S4G196500"
Ledus.S4	AUGUSTUS	stop_codon	14900405	14900407	.	-	0	transcript_id "Ledus.S4G196500.t1"; gene_id "Ledus.S4G196500"
Ledus.S4	AUGUSTUS	CDS	14900408	14900833	0.97	-	0	transcript_id "Ledus.S4G196500.t1"; gene_id "Ledus.S4G196500"
Ledus.S4	AUGUSTUS	exon	14900408	14900833	.	-	.	transcript_id "Ledus.S4G196500.t1"; gene_id "Ledus.S4G196500"
Ledus.S4	AUGUSTUS	start_codon	14900831	14900833	.	-	0	transcript_id "Ledus.S4G196500.t1"; gene_id "Ledus.S4G196500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4925.t1 is derived from g2363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20664254	20666070	.	+	.	Ledus.S1G234600
Ledus.S1	AUGUSTUS	transcript	20664254	20666070	.	+	.	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	start_codon	20664254	20664256	.	+	0	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	CDS	20664254	20664426	0.92	+	0	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	exon	20664254	20664426	.	+	.	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	intron	20664427	20664796	.	+	.	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	CDS	20664797	20664906	1	+	1	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	exon	20664797	20664906	.	+	.	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	intron	20664907	20665044	.	+	.	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	CDS	20665045	20665232	0.99	+	2	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	exon	20665045	20665232	.	+	.	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	intron	20665233	20665419	.	+	.	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	CDS	20665420	20666070	0.99	+	0	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	exon	20665420	20666070	.	+	.	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
Ledus.S1	AUGUSTUS	stop_codon	20666071	20666073	.	+	0	transcript_id "Ledus.S1G234600.t1"; gene_id "Ledus.S1G234600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4617.t1 is derived from g2054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18260684	18262434	.	-	.	Ledus.S1G203800
Ledus.S1	AUGUSTUS	transcript	18260684	18262434	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	stop_codon	18260681	18260683	.	-	0	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	CDS	18260684	18260748	0.95	-	2	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	exon	18260684	18260748	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	intron	18260749	18260885	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	CDS	18260886	18261048	0.88	-	0	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	exon	18260886	18261048	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	intron	18261049	18261114	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	CDS	18261115	18261255	0.93	-	0	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	exon	18261115	18261255	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	intron	18261256	18261336	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	CDS	18261337	18261454	1	-	1	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	exon	18261337	18261454	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	intron	18261455	18261581	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	CDS	18261582	18261725	1	-	1	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	exon	18261582	18261725	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	intron	18261726	18261809	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	CDS	18261810	18261900	1	-	2	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	exon	18261810	18261900	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	intron	18261901	18262121	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	CDS	18262122	18262434	1	-	0	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	exon	18262122	18262434	.	-	.	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
Ledus.S1	AUGUSTUS	start_codon	18262432	18262434	.	-	0	transcript_id "Ledus.S1G203800.t1"; gene_id "Ledus.S1G203800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6880.t1 is derived from g4324.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34926492	34928145	.	+	.	Ledus.S1G430100
Ledus.S1	AUGUSTUS	transcript	34926492	34928145	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	start_codon	34926492	34926494	.	+	0	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	CDS	34926492	34926585	0.92	+	0	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	exon	34926492	34926585	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	intron	34926586	34926684	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	CDS	34926685	34926693	0.87	+	2	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	exon	34926685	34926693	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	intron	34926694	34926798	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	CDS	34926799	34926920	0.92	+	2	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	exon	34926799	34926920	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	intron	34926921	34927071	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	CDS	34927072	34927209	1	+	0	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	exon	34927072	34927209	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	intron	34927210	34927684	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	CDS	34927685	34927768	0.99	+	0	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	exon	34927685	34927768	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	intron	34927769	34927879	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	CDS	34927880	34927963	0.69	+	0	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	exon	34927880	34927963	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	intron	34927964	34928133	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	CDS	34928134	34928145	0.26	+	0	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	exon	34928134	34928145	.	+	.	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
Ledus.S1	AUGUSTUS	stop_codon	34928146	34928148	.	+	0	transcript_id "Ledus.S1G430100.t1"; gene_id "Ledus.S1G430100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1117.t1 is derived from g7978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7656789	7660048	.	-	.	Ledus.S2G099900
Ledus.S2	AUGUSTUS	transcript	7656789	7660048	.	-	.	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	stop_codon	7656786	7656788	.	-	0	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	CDS	7656789	7656914	1	-	0	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	exon	7656789	7656914	.	-	.	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	intron	7656915	7657005	.	-	.	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	CDS	7657006	7657113	1	-	0	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	exon	7657006	7657113	.	-	.	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	intron	7657114	7657210	.	-	.	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	CDS	7657211	7657300	1	-	0	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	exon	7657211	7657300	.	-	.	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	intron	7657301	7657439	.	-	.	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	CDS	7657440	7657556	1	-	0	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	exon	7657440	7657556	.	-	.	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	intron	7657557	7657698	.	-	.	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	CDS	7657699	7657818	1	-	0	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	exon	7657699	7657818	.	-	.	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	intron	7657819	7657945	.	-	.	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	CDS	7657946	7660048	0.97	-	0	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	exon	7657946	7660048	.	-	.	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
Ledus.S2	AUGUSTUS	start_codon	7660046	7660048	.	-	0	transcript_id "Ledus.S2G099900.t1"; gene_id "Ledus.S2G099900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5859.t1 is derived from g3301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27366271	27366480	.	-	.	Ledus.S1G328000
Ledus.S1	AUGUSTUS	transcript	27366271	27366480	.	-	.	transcript_id "Ledus.S1G328000.t1"; gene_id "Ledus.S1G328000"
Ledus.S1	AUGUSTUS	stop_codon	27366268	27366270	.	-	0	transcript_id "Ledus.S1G328000.t1"; gene_id "Ledus.S1G328000"
Ledus.S1	AUGUSTUS	CDS	27366271	27366480	0.92	-	0	transcript_id "Ledus.S1G328000.t1"; gene_id "Ledus.S1G328000"
Ledus.S1	AUGUSTUS	exon	27366271	27366480	.	-	.	transcript_id "Ledus.S1G328000.t1"; gene_id "Ledus.S1G328000"
Ledus.S1	AUGUSTUS	start_codon	27366478	27366480	.	-	0	transcript_id "Ledus.S1G328000.t1"; gene_id "Ledus.S1G328000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5535.t1 is derived from g2974.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25017666	25018510	.	+	.	Ledus.S1G295600
Ledus.S1	AUGUSTUS	transcript	25017666	25018510	.	+	.	transcript_id "Ledus.S1G295600.t1"; gene_id "Ledus.S1G295600"
Ledus.S1	AUGUSTUS	start_codon	25017666	25017668	.	+	0	transcript_id "Ledus.S1G295600.t1"; gene_id "Ledus.S1G295600"
Ledus.S1	AUGUSTUS	CDS	25017666	25017920	0.76	+	0	transcript_id "Ledus.S1G295600.t1"; gene_id "Ledus.S1G295600"
Ledus.S1	AUGUSTUS	exon	25017666	25017920	.	+	.	transcript_id "Ledus.S1G295600.t1"; gene_id "Ledus.S1G295600"
Ledus.S1	AUGUSTUS	intron	25017921	25018042	.	+	.	transcript_id "Ledus.S1G295600.t1"; gene_id "Ledus.S1G295600"
Ledus.S1	AUGUSTUS	CDS	25018043	25018247	0.6	+	0	transcript_id "Ledus.S1G295600.t1"; gene_id "Ledus.S1G295600"
Ledus.S1	AUGUSTUS	exon	25018043	25018247	.	+	.	transcript_id "Ledus.S1G295600.t1"; gene_id "Ledus.S1G295600"
Ledus.S1	AUGUSTUS	intron	25018248	25018370	.	+	.	transcript_id "Ledus.S1G295600.t1"; gene_id "Ledus.S1G295600"
Ledus.S1	AUGUSTUS	CDS	25018371	25018510	0.95	+	2	transcript_id "Ledus.S1G295600.t1"; gene_id "Ledus.S1G295600"
Ledus.S1	AUGUSTUS	exon	25018371	25018510	.	+	.	transcript_id "Ledus.S1G295600.t1"; gene_id "Ledus.S1G295600"
Ledus.S1	AUGUSTUS	stop_codon	25018511	25018513	.	+	0	transcript_id "Ledus.S1G295600.t1"; gene_id "Ledus.S1G295600"
# This transcript jg10757.t2 is derived from g11788.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10757.t3 is derived from g11788.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10758.t1 is derived from g11789.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17511711	17514709	.	-	.	Ledus.S3G223500
Ledus.S3	AUGUSTUS	transcript	17511711	17514503	.	-	.	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	stop_codon	17511708	17511710	.	-	0	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	CDS	17511711	17513413	0.73	-	2	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	exon	17511711	17513413	.	-	.	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	intron	17513414	17513502	.	-	.	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	CDS	17513503	17513575	1	-	0	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	exon	17513503	17513575	.	-	.	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	intron	17513576	17513728	.	-	.	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	CDS	17513729	17513928	0.99	-	2	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	exon	17513729	17513928	.	-	.	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	intron	17513929	17514004	.	-	.	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	CDS	17514005	17514135	0.98	-	1	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	exon	17514005	17514135	.	-	.	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	intron	17514136	17514393	.	-	.	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	CDS	17514394	17514503	0.73	-	0	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	exon	17514394	17514503	.	-	.	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	start_codon	17514501	17514503	.	-	0	transcript_id "Ledus.S3G223500.t1"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	transcript	17511711	17514709	.	-	.	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	stop_codon	17511708	17511710	.	-	0	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	CDS	17511711	17513413	0.8	-	2	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	exon	17511711	17513413	.	-	.	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	intron	17513414	17513502	.	-	.	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	CDS	17513503	17513575	1	-	0	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	exon	17513503	17513575	.	-	.	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	intron	17513576	17513728	.	-	.	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	CDS	17513729	17513928	1	-	2	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	exon	17513729	17513928	.	-	.	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	intron	17513929	17514393	.	-	.	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	CDS	17514394	17514709	0.74	-	0	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	exon	17514394	17514709	.	-	.	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
Ledus.S3	AUGUSTUS	start_codon	17514707	17514709	.	-	0	transcript_id "Ledus.S3G223500.t2"; gene_id "Ledus.S3G223500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8315.t1 is derived from g12987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10695023	10695731	.	+	.	Ledus.S5G109300
Ledus.S5	AUGUSTUS	transcript	10695023	10695731	.	+	.	transcript_id "Ledus.S5G109300.t1"; gene_id "Ledus.S5G109300"
Ledus.S5	AUGUSTUS	start_codon	10695023	10695025	.	+	0	transcript_id "Ledus.S5G109300.t1"; gene_id "Ledus.S5G109300"
Ledus.S5	AUGUSTUS	CDS	10695023	10695196	0.63	+	0	transcript_id "Ledus.S5G109300.t1"; gene_id "Ledus.S5G109300"
Ledus.S5	AUGUSTUS	exon	10695023	10695196	.	+	.	transcript_id "Ledus.S5G109300.t1"; gene_id "Ledus.S5G109300"
Ledus.S5	AUGUSTUS	intron	10695197	10695505	.	+	.	transcript_id "Ledus.S5G109300.t1"; gene_id "Ledus.S5G109300"
Ledus.S5	AUGUSTUS	CDS	10695506	10695567	0.65	+	0	transcript_id "Ledus.S5G109300.t1"; gene_id "Ledus.S5G109300"
Ledus.S5	AUGUSTUS	exon	10695506	10695567	.	+	.	transcript_id "Ledus.S5G109300.t1"; gene_id "Ledus.S5G109300"
Ledus.S5	AUGUSTUS	intron	10695568	10695667	.	+	.	transcript_id "Ledus.S5G109300.t1"; gene_id "Ledus.S5G109300"
Ledus.S5	AUGUSTUS	CDS	10695668	10695731	0.64	+	1	transcript_id "Ledus.S5G109300.t1"; gene_id "Ledus.S5G109300"
Ledus.S5	AUGUSTUS	exon	10695668	10695731	.	+	.	transcript_id "Ledus.S5G109300.t1"; gene_id "Ledus.S5G109300"
Ledus.S5	AUGUSTUS	stop_codon	10695732	10695734	.	+	0	transcript_id "Ledus.S5G109300.t1"; gene_id "Ledus.S5G109300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10582.t1 is derived from g11612.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16251924	16252462	.	+	.	Ledus.S3G205900
Ledus.S3	AUGUSTUS	transcript	16251924	16252462	.	+	.	transcript_id "Ledus.S3G205900.t1"; gene_id "Ledus.S3G205900"
Ledus.S3	AUGUSTUS	start_codon	16251924	16251926	.	+	0	transcript_id "Ledus.S3G205900.t1"; gene_id "Ledus.S3G205900"
Ledus.S3	AUGUSTUS	CDS	16251924	16251950	0.25	+	0	transcript_id "Ledus.S3G205900.t1"; gene_id "Ledus.S3G205900"
Ledus.S3	AUGUSTUS	exon	16251924	16251950	.	+	.	transcript_id "Ledus.S3G205900.t1"; gene_id "Ledus.S3G205900"
Ledus.S3	AUGUSTUS	intron	16251951	16252114	.	+	.	transcript_id "Ledus.S3G205900.t1"; gene_id "Ledus.S3G205900"
Ledus.S3	AUGUSTUS	CDS	16252115	16252173	0.78	+	0	transcript_id "Ledus.S3G205900.t1"; gene_id "Ledus.S3G205900"
Ledus.S3	AUGUSTUS	exon	16252115	16252173	.	+	.	transcript_id "Ledus.S3G205900.t1"; gene_id "Ledus.S3G205900"
Ledus.S3	AUGUSTUS	intron	16252174	16252317	.	+	.	transcript_id "Ledus.S3G205900.t1"; gene_id "Ledus.S3G205900"
Ledus.S3	AUGUSTUS	CDS	16252318	16252462	0.83	+	1	transcript_id "Ledus.S3G205900.t1"; gene_id "Ledus.S3G205900"
Ledus.S3	AUGUSTUS	exon	16252318	16252462	.	+	.	transcript_id "Ledus.S3G205900.t1"; gene_id "Ledus.S3G205900"
Ledus.S3	AUGUSTUS	stop_codon	16252463	16252465	.	+	0	transcript_id "Ledus.S3G205900.t1"; gene_id "Ledus.S3G205900"
# This transcript jg3545.t2 is derived from g981.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3546.t1 is derived from g982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9381008	9385305	.	+	.	Ledus.S1G096700
Ledus.S1	AUGUSTUS	transcript	9381008	9385305	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	start_codon	9381008	9381010	.	+	0	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9381008	9381232	0.82	+	0	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9381008	9381232	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9381233	9381385	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9381386	9381487	0.92	+	0	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9381386	9381487	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9381488	9381703	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9381704	9381754	1	+	0	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9381704	9381754	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9381755	9381838	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9381839	9381959	0.99	+	0	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9381839	9381959	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9381960	9382068	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9382069	9382193	0.99	+	2	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9382069	9382193	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9382194	9382277	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9382278	9382379	0.98	+	0	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9382278	9382379	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9382380	9382571	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9382572	9382646	0.96	+	0	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9382572	9382646	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9382647	9382753	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9382754	9382833	1	+	0	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9382754	9382833	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9382834	9382927	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9382928	9383123	1	+	1	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9382928	9383123	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9383124	9383283	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9383284	9383385	1	+	0	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9383284	9383385	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9383386	9383546	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9383547	9384649	1	+	0	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9383547	9384649	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9384650	9384835	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9384836	9384911	0.99	+	1	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9384836	9384911	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9384912	9384999	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9385000	9385018	0.99	+	0	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9385000	9385018	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9385019	9385288	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9385289	9385305	1	+	2	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9385289	9385305	.	+	.	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	stop_codon	9385306	9385308	.	+	0	transcript_id "Ledus.S1G096700.t1"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	transcript	9381008	9385305	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	start_codon	9381008	9381010	.	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9381008	9381232	0.81	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9381008	9381232	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9381233	9381385	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9381386	9381487	0.96	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9381386	9381487	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9381488	9381703	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9381704	9381754	1	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9381704	9381754	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9381755	9381838	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9381839	9381959	1	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9381839	9381959	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9381960	9382068	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9382069	9382193	1	+	2	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9382069	9382193	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9382194	9382277	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9382278	9382379	1	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9382278	9382379	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9382380	9382571	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9382572	9382646	0.99	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9382572	9382646	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9382647	9382753	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9382754	9382833	0.99	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9382754	9382833	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9382834	9382927	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9382928	9382961	0.62	+	1	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9382928	9382961	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9382962	9383172	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9383173	9383184	0.99	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9383173	9383184	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9383185	9383283	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9383284	9383385	1	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9383284	9383385	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9383386	9383546	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9383547	9384649	1	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9383547	9384649	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9384650	9384835	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9384836	9384911	0.95	+	1	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9384836	9384911	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9384912	9384999	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9385000	9385018	0.96	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9385000	9385018	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	intron	9385019	9385288	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	CDS	9385289	9385305	1	+	2	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	exon	9385289	9385305	.	+	.	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
Ledus.S1	AUGUSTUS	stop_codon	9385306	9385308	.	+	0	transcript_id "Ledus.S1G096700.t2"; gene_id "Ledus.S1G096700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4723.t1 is derived from g2161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19257876	19259344	.	+	.	Ledus.S1G214400
Ledus.S1	AUGUSTUS	transcript	19257876	19259344	.	+	.	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	start_codon	19257876	19257878	.	+	0	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	CDS	19257876	19257934	0.94	+	0	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	exon	19257876	19257934	.	+	.	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	intron	19257935	19258194	.	+	.	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	CDS	19258195	19258300	1	+	1	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	exon	19258195	19258300	.	+	.	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	intron	19258301	19258384	.	+	.	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	CDS	19258385	19258522	1	+	0	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	exon	19258385	19258522	.	+	.	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	intron	19258523	19258634	.	+	.	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	CDS	19258635	19258820	1	+	0	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	exon	19258635	19258820	.	+	.	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	intron	19258821	19258945	.	+	.	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	CDS	19258946	19259146	1	+	0	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	exon	19258946	19259146	.	+	.	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	intron	19259147	19259245	.	+	.	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	CDS	19259246	19259344	1	+	0	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	exon	19259246	19259344	.	+	.	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
Ledus.S1	AUGUSTUS	stop_codon	19259345	19259347	.	+	0	transcript_id "Ledus.S1G214400.t1"; gene_id "Ledus.S1G214400"
# This transcript jg154.t2 is derived from g7015.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg155.t1 is derived from g7016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	386619	388305	.	+	.	Ledus.S2G003700
Ledus.S2	AUGUSTUS	transcript	386619	388305	.	+	.	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	start_codon	386619	386621	.	+	0	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	CDS	386619	386709	1	+	0	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	exon	386619	386709	.	+	.	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	intron	386710	386942	.	+	.	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	CDS	386943	387059	1	+	2	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	exon	386943	387059	.	+	.	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	intron	387060	387230	.	+	.	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	CDS	387231	387326	1	+	2	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	exon	387231	387326	.	+	.	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	intron	387327	387424	.	+	.	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	CDS	387425	387651	0.92	+	2	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	exon	387425	387651	.	+	.	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	intron	387652	387883	.	+	.	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	CDS	387884	387937	1	+	0	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	exon	387884	387937	.	+	.	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	intron	387938	388098	.	+	.	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	CDS	388099	388305	0.99	+	0	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	exon	388099	388305	.	+	.	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	stop_codon	388306	388308	.	+	0	transcript_id "Ledus.S2G003700.t1"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	transcript	386619	388305	.	+	.	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	start_codon	386619	386621	.	+	0	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	CDS	386619	386709	0.98	+	0	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	exon	386619	386709	.	+	.	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	intron	386710	386942	.	+	.	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	CDS	386943	387059	1	+	2	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	exon	386943	387059	.	+	.	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	intron	387060	387272	.	+	.	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	CDS	387273	387326	1	+	2	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	exon	387273	387326	.	+	.	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	intron	387327	387424	.	+	.	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	CDS	387425	387651	0.92	+	2	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	exon	387425	387651	.	+	.	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	intron	387652	387883	.	+	.	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	CDS	387884	387937	1	+	0	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	exon	387884	387937	.	+	.	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	intron	387938	388098	.	+	.	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	CDS	388099	388305	0.94	+	0	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	exon	388099	388305	.	+	.	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
Ledus.S2	AUGUSTUS	stop_codon	388306	388308	.	+	0	transcript_id "Ledus.S2G003700.t2"; gene_id "Ledus.S2G003700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10459.t1 is derived from g11489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15368669	15369103	.	-	.	Ledus.S3G193600
Ledus.S3	AUGUSTUS	transcript	15368669	15369103	.	-	.	transcript_id "Ledus.S3G193600.t1"; gene_id "Ledus.S3G193600"
Ledus.S3	AUGUSTUS	stop_codon	15368666	15368668	.	-	0	transcript_id "Ledus.S3G193600.t1"; gene_id "Ledus.S3G193600"
Ledus.S3	AUGUSTUS	CDS	15368669	15369103	0.83	-	0	transcript_id "Ledus.S3G193600.t1"; gene_id "Ledus.S3G193600"
Ledus.S3	AUGUSTUS	exon	15368669	15369103	.	-	.	transcript_id "Ledus.S3G193600.t1"; gene_id "Ledus.S3G193600"
Ledus.S3	AUGUSTUS	start_codon	15369101	15369103	.	-	0	transcript_id "Ledus.S3G193600.t1"; gene_id "Ledus.S3G193600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1381.t1 is derived from g8242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9703270	9709448	.	+	.	Ledus.S2G126300
Ledus.S2	AUGUSTUS	transcript	9703270	9709448	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	start_codon	9703270	9703272	.	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9703270	9703752	0.48	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9703270	9703752	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9703753	9703869	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9703870	9703927	1	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9703870	9703927	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9703928	9704022	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9704023	9704116	1	+	2	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9704023	9704116	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9704117	9704233	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9704234	9704336	1	+	1	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9704234	9704336	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9704337	9704456	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9704457	9704510	1	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9704457	9704510	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9704511	9704592	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9704593	9704667	1	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9704593	9704667	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9704668	9704846	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9704847	9704915	1	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9704847	9704915	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9704916	9705052	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9705053	9705136	1	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9705053	9705136	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9705137	9705355	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9705356	9705547	1	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9705356	9705547	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9705548	9705643	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9705644	9706206	0.98	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9705644	9706206	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9706207	9706371	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9706372	9706501	1	+	1	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9706372	9706501	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9706502	9706600	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9706601	9706692	1	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9706601	9706692	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9706693	9706798	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9706799	9706977	1	+	1	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9706799	9706977	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9706978	9707053	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9707054	9707259	1	+	2	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9707054	9707259	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9707260	9707347	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9707348	9707449	1	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9707348	9707449	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9707450	9707530	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9707531	9707693	1	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9707531	9707693	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9707694	9707797	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9707798	9708075	0.73	+	2	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9707798	9708075	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9708076	9708225	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9708226	9708363	1	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9708226	9708363	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9708364	9708449	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9708450	9708529	1	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9708450	9708529	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9708530	9708737	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9708738	9708837	1	+	1	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9708738	9708837	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9708838	9708945	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9708946	9709075	0.98	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9708946	9709075	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9709076	9709194	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9709195	9709301	0.51	+	2	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9709195	9709301	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	intron	9709302	9709409	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	CDS	9709410	9709448	0.54	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	exon	9709410	9709448	.	+	.	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
Ledus.S2	AUGUSTUS	stop_codon	9709449	9709451	.	+	0	transcript_id "Ledus.S2G126300.t1"; gene_id "Ledus.S2G126300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5660.t1 is derived from g3099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25679689	25680479	.	+	.	Ledus.S1G308100
Ledus.S1	AUGUSTUS	transcript	25679689	25680479	.	+	.	transcript_id "Ledus.S1G308100.t1"; gene_id "Ledus.S1G308100"
Ledus.S1	AUGUSTUS	start_codon	25679689	25679691	.	+	0	transcript_id "Ledus.S1G308100.t1"; gene_id "Ledus.S1G308100"
Ledus.S1	AUGUSTUS	CDS	25679689	25680168	0.89	+	0	transcript_id "Ledus.S1G308100.t1"; gene_id "Ledus.S1G308100"
Ledus.S1	AUGUSTUS	exon	25679689	25680168	.	+	.	transcript_id "Ledus.S1G308100.t1"; gene_id "Ledus.S1G308100"
Ledus.S1	AUGUSTUS	intron	25680169	25680257	.	+	.	transcript_id "Ledus.S1G308100.t1"; gene_id "Ledus.S1G308100"
Ledus.S1	AUGUSTUS	CDS	25680258	25680479	1	+	0	transcript_id "Ledus.S1G308100.t1"; gene_id "Ledus.S1G308100"
Ledus.S1	AUGUSTUS	exon	25680258	25680479	.	+	.	transcript_id "Ledus.S1G308100.t1"; gene_id "Ledus.S1G308100"
Ledus.S1	AUGUSTUS	stop_codon	25680480	25680482	.	+	0	transcript_id "Ledus.S1G308100.t1"; gene_id "Ledus.S1G308100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9390.t1 is derived from g10420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6509598	6510723	.	-	.	Ledus.S3G086700
Ledus.S3	AUGUSTUS	transcript	6509598	6510723	.	-	.	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	stop_codon	6509595	6509597	.	-	0	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	CDS	6509598	6509678	1	-	0	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	exon	6509598	6509678	.	-	.	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	intron	6509679	6509753	.	-	.	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	CDS	6509754	6509846	1	-	0	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	exon	6509754	6509846	.	-	.	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	intron	6509847	6510016	.	-	.	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	CDS	6510017	6510310	1	-	0	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	exon	6510017	6510310	.	-	.	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	intron	6510311	6510477	.	-	.	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	CDS	6510478	6510723	0.68	-	0	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	exon	6510478	6510723	.	-	.	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
Ledus.S3	AUGUSTUS	start_codon	6510721	6510723	.	-	0	transcript_id "Ledus.S3G086700.t1"; gene_id "Ledus.S3G086700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6123.t1 is derived from g3566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29019070	29020528	.	-	.	Ledus.S1G354400
Ledus.S1	AUGUSTUS	transcript	29019070	29020528	.	-	.	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	stop_codon	29019067	29019069	.	-	0	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	CDS	29019070	29019262	1	-	1	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	exon	29019070	29019262	.	-	.	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	intron	29019263	29019359	.	-	.	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	CDS	29019360	29019547	1	-	0	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	exon	29019360	29019547	.	-	.	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	intron	29019548	29019618	.	-	.	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	CDS	29019619	29019938	1	-	2	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	exon	29019619	29019938	.	-	.	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	intron	29019939	29020054	.	-	.	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	CDS	29020055	29020181	1	-	0	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	exon	29020055	29020181	.	-	.	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	intron	29020182	29020252	.	-	.	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	CDS	29020253	29020365	0.59	-	2	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	exon	29020253	29020365	.	-	.	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	intron	29020366	29020470	.	-	.	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	CDS	29020471	29020528	0.56	-	0	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	exon	29020471	29020528	.	-	.	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
Ledus.S1	AUGUSTUS	start_codon	29020526	29020528	.	-	0	transcript_id "Ledus.S1G354400.t1"; gene_id "Ledus.S1G354400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4524.t1 is derived from g1961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17508811	17511414	.	+	.	Ledus.S1G194500
Ledus.S1	AUGUSTUS	transcript	17508811	17511414	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	start_codon	17508811	17508813	.	+	0	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	CDS	17508811	17508865	0.78	+	0	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	exon	17508811	17508865	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	intron	17508866	17508947	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	CDS	17508948	17509059	0.94	+	2	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	exon	17508948	17509059	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	intron	17509060	17509154	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	CDS	17509155	17509397	0.99	+	1	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	exon	17509155	17509397	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	intron	17509398	17509483	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	CDS	17509484	17509538	0.98	+	1	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	exon	17509484	17509538	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	intron	17509539	17509694	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	CDS	17509695	17509793	1	+	0	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	exon	17509695	17509793	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	intron	17509794	17509939	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	CDS	17509940	17510043	1	+	0	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	exon	17509940	17510043	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	intron	17510044	17510330	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	CDS	17510331	17510420	1	+	1	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	exon	17510331	17510420	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	intron	17510421	17510504	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	CDS	17510505	17510650	0.76	+	1	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	exon	17510505	17510650	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	intron	17510651	17510765	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	CDS	17510766	17510850	0.86	+	2	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	exon	17510766	17510850	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	intron	17510851	17510960	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	CDS	17510961	17511414	0.59	+	1	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	exon	17510961	17511414	.	+	.	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
Ledus.S1	AUGUSTUS	stop_codon	17511415	17511417	.	+	0	transcript_id "Ledus.S1G194500.t1"; gene_id "Ledus.S1G194500"
# This transcript jg13030.t2 is derived from g6840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13031.t1 is derived from g6841.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3571101	3571301	.	-	.	Ledus.S6G009300
Ledus.S6	AUGUSTUS	transcript	3571101	3571301	.	-	.	transcript_id "Ledus.S6G009300.t1"; gene_id "Ledus.S6G009300"
Ledus.S6	AUGUSTUS	stop_codon	3571098	3571100	.	-	0	transcript_id "Ledus.S6G009300.t1"; gene_id "Ledus.S6G009300"
Ledus.S6	AUGUSTUS	CDS	3571101	3571301	0.71	-	0	transcript_id "Ledus.S6G009300.t1"; gene_id "Ledus.S6G009300"
Ledus.S6	AUGUSTUS	exon	3571101	3571301	.	-	.	transcript_id "Ledus.S6G009300.t1"; gene_id "Ledus.S6G009300"
Ledus.S6	AUGUSTUS	start_codon	3571299	3571301	.	-	0	transcript_id "Ledus.S6G009300.t1"; gene_id "Ledus.S6G009300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1184.t1 is derived from g8045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8364678	8368031	.	+	.	Ledus.S2G106600
Ledus.S2	AUGUSTUS	transcript	8364678	8368031	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	start_codon	8364678	8364680	.	+	0	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	CDS	8364678	8365328	0.29	+	0	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	exon	8364678	8365328	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	intron	8365329	8365488	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	CDS	8365489	8365653	1	+	0	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	exon	8365489	8365653	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	intron	8365654	8365891	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	CDS	8365892	8366107	1	+	0	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	exon	8365892	8366107	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	intron	8366108	8366275	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	CDS	8366276	8366458	1	+	0	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	exon	8366276	8366458	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	intron	8366459	8366569	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	CDS	8366570	8366791	0.99	+	0	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	exon	8366570	8366791	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	intron	8366792	8366996	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	CDS	8366997	8367113	0.99	+	0	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	exon	8366997	8367113	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	intron	8367114	8367479	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	CDS	8367480	8367605	0.54	+	0	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	exon	8367480	8367605	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	intron	8367606	8367688	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	CDS	8367689	8367757	1	+	0	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	exon	8367689	8367757	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	intron	8367758	8367839	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	CDS	8367840	8368031	0.99	+	0	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	exon	8367840	8368031	.	+	.	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
Ledus.S2	AUGUSTUS	stop_codon	8368032	8368034	.	+	0	transcript_id "Ledus.S2G106600.t1"; gene_id "Ledus.S2G106600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2377.t1 is derived from g9240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17739008	17741200	.	+	.	Ledus.S2G225900
Ledus.S2	AUGUSTUS	transcript	17739008	17741200	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	start_codon	17739008	17739010	.	+	0	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	CDS	17739008	17739627	0.45	+	0	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	exon	17739008	17739627	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	intron	17739628	17739811	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	CDS	17739812	17739951	1	+	1	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	exon	17739812	17739951	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	intron	17739952	17740038	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	CDS	17740039	17740224	1	+	2	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	exon	17740039	17740224	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	intron	17740225	17740313	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	CDS	17740314	17740442	1	+	2	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	exon	17740314	17740442	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	intron	17740443	17740533	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	CDS	17740534	17740689	1	+	2	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	exon	17740534	17740689	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	intron	17740690	17740788	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	CDS	17740789	17740836	0.47	+	2	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	exon	17740789	17740836	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	intron	17740837	17741027	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	CDS	17741028	17741200	0.7	+	2	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	exon	17741028	17741200	.	+	.	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
Ledus.S2	AUGUSTUS	stop_codon	17741201	17741203	.	+	0	transcript_id "Ledus.S2G225900.t1"; gene_id "Ledus.S2G225900"
# This transcript jg11741.t2 is derived from g5360.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11741.t3 is derived from g5360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11741.t4 is derived from g5360.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11742.t1 is derived from g5361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6532494	6533076	.	+	.	Ledus.S4G089800
Ledus.S4	AUGUSTUS	transcript	6532494	6533076	.	+	.	transcript_id "Ledus.S4G089800.t1"; gene_id "Ledus.S4G089800"
Ledus.S4	AUGUSTUS	start_codon	6532494	6532496	.	+	0	transcript_id "Ledus.S4G089800.t1"; gene_id "Ledus.S4G089800"
Ledus.S4	AUGUSTUS	CDS	6532494	6532773	0.99	+	0	transcript_id "Ledus.S4G089800.t1"; gene_id "Ledus.S4G089800"
Ledus.S4	AUGUSTUS	exon	6532494	6532773	.	+	.	transcript_id "Ledus.S4G089800.t1"; gene_id "Ledus.S4G089800"
Ledus.S4	AUGUSTUS	intron	6532774	6532849	.	+	.	transcript_id "Ledus.S4G089800.t1"; gene_id "Ledus.S4G089800"
Ledus.S4	AUGUSTUS	CDS	6532850	6533076	0.99	+	2	transcript_id "Ledus.S4G089800.t1"; gene_id "Ledus.S4G089800"
Ledus.S4	AUGUSTUS	exon	6532850	6533076	.	+	.	transcript_id "Ledus.S4G089800.t1"; gene_id "Ledus.S4G089800"
Ledus.S4	AUGUSTUS	stop_codon	6533077	6533079	.	+	0	transcript_id "Ledus.S4G089800.t1"; gene_id "Ledus.S4G089800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6511.t1 is derived from g3954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31798403	31798639	.	+	.	Ledus.S1G393200
Ledus.S1	AUGUSTUS	transcript	31798403	31798639	.	+	.	transcript_id "Ledus.S1G393200.t1"; gene_id "Ledus.S1G393200"
Ledus.S1	AUGUSTUS	start_codon	31798403	31798405	.	+	0	transcript_id "Ledus.S1G393200.t1"; gene_id "Ledus.S1G393200"
Ledus.S1	AUGUSTUS	CDS	31798403	31798639	0.94	+	0	transcript_id "Ledus.S1G393200.t1"; gene_id "Ledus.S1G393200"
Ledus.S1	AUGUSTUS	exon	31798403	31798639	.	+	.	transcript_id "Ledus.S1G393200.t1"; gene_id "Ledus.S1G393200"
Ledus.S1	AUGUSTUS	stop_codon	31798640	31798642	.	+	0	transcript_id "Ledus.S1G393200.t1"; gene_id "Ledus.S1G393200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12951.t1 is derived from g6761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	723163	723498	.	-	.	Ledus.S6G001300
Ledus.S6	AUGUSTUS	transcript	723163	723498	.	-	.	transcript_id "Ledus.S6G001300.t1"; gene_id "Ledus.S6G001300"
Ledus.S6	AUGUSTUS	stop_codon	723160	723162	.	-	0	transcript_id "Ledus.S6G001300.t1"; gene_id "Ledus.S6G001300"
Ledus.S6	AUGUSTUS	CDS	723163	723498	0.58	-	0	transcript_id "Ledus.S6G001300.t1"; gene_id "Ledus.S6G001300"
Ledus.S6	AUGUSTUS	exon	723163	723498	.	-	.	transcript_id "Ledus.S6G001300.t1"; gene_id "Ledus.S6G001300"
Ledus.S6	AUGUSTUS	start_codon	723496	723498	.	-	0	transcript_id "Ledus.S6G001300.t1"; gene_id "Ledus.S6G001300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12102.t1 is derived from g5721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9509227	9511957	.	+	.	Ledus.S4G125800
Ledus.S4	AUGUSTUS	transcript	9509227	9511957	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	start_codon	9509227	9509229	.	+	0	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	CDS	9509227	9509457	0.96	+	0	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	exon	9509227	9509457	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	intron	9509458	9509663	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	CDS	9509664	9510043	1	+	0	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	exon	9509664	9510043	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	intron	9510044	9510166	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	CDS	9510167	9510284	0.97	+	1	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	exon	9510167	9510284	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	intron	9510285	9510385	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	CDS	9510386	9510580	1	+	0	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	exon	9510386	9510580	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	intron	9510581	9510669	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	CDS	9510670	9510894	0.84	+	0	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	exon	9510670	9510894	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	intron	9510895	9511002	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	CDS	9511003	9511062	0.84	+	0	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	exon	9511003	9511062	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	intron	9511063	9511149	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	CDS	9511150	9511230	1	+	0	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	exon	9511150	9511230	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	intron	9511231	9511318	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	CDS	9511319	9511957	1	+	0	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	exon	9511319	9511957	.	+	.	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
Ledus.S4	AUGUSTUS	stop_codon	9511958	9511960	.	+	0	transcript_id "Ledus.S4G125800.t1"; gene_id "Ledus.S4G125800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6222.t1 is derived from g3665.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29737418	29739913	.	+	.	Ledus.S1G364300
Ledus.S1	AUGUSTUS	transcript	29737418	29739913	.	+	.	transcript_id "Ledus.S1G364300.t1"; gene_id "Ledus.S1G364300"
Ledus.S1	AUGUSTUS	start_codon	29737418	29737420	.	+	0	transcript_id "Ledus.S1G364300.t1"; gene_id "Ledus.S1G364300"
Ledus.S1	AUGUSTUS	CDS	29737418	29739913	0.9	+	0	transcript_id "Ledus.S1G364300.t1"; gene_id "Ledus.S1G364300"
Ledus.S1	AUGUSTUS	exon	29737418	29739913	.	+	.	transcript_id "Ledus.S1G364300.t1"; gene_id "Ledus.S1G364300"
Ledus.S1	AUGUSTUS	stop_codon	29739914	29739916	.	+	0	transcript_id "Ledus.S1G364300.t1"; gene_id "Ledus.S1G364300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7095.t1 is derived from g6626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1513675	1516926	.	+	.	Ledus.C7G015600
Ledus.C7	AUGUSTUS	transcript	1513675	1516926	.	+	.	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	start_codon	1513675	1513677	.	+	0	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	CDS	1513675	1515569	1	+	0	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	exon	1513675	1515569	.	+	.	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	intron	1515570	1515867	.	+	.	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	CDS	1515868	1516159	0.89	+	1	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	exon	1515868	1516159	.	+	.	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	intron	1516160	1516264	.	+	.	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	CDS	1516265	1516596	0.39	+	0	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	exon	1516265	1516596	.	+	.	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	intron	1516597	1516709	.	+	.	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	CDS	1516710	1516926	0.51	+	1	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	exon	1516710	1516926	.	+	.	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
Ledus.C7	AUGUSTUS	stop_codon	1516927	1516929	.	+	0	transcript_id "Ledus.C7G015600.t1"; gene_id "Ledus.C7G015600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5892.t1 is derived from g3335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27640444	27641195	.	-	.	Ledus.S1G331300
Ledus.S1	AUGUSTUS	transcript	27640444	27641195	.	-	.	transcript_id "Ledus.S1G331300.t1"; gene_id "Ledus.S1G331300"
Ledus.S1	AUGUSTUS	stop_codon	27640441	27640443	.	-	0	transcript_id "Ledus.S1G331300.t1"; gene_id "Ledus.S1G331300"
Ledus.S1	AUGUSTUS	CDS	27640444	27640538	0.88	-	2	transcript_id "Ledus.S1G331300.t1"; gene_id "Ledus.S1G331300"
Ledus.S1	AUGUSTUS	exon	27640444	27640538	.	-	.	transcript_id "Ledus.S1G331300.t1"; gene_id "Ledus.S1G331300"
Ledus.S1	AUGUSTUS	intron	27640539	27640694	.	-	.	transcript_id "Ledus.S1G331300.t1"; gene_id "Ledus.S1G331300"
Ledus.S1	AUGUSTUS	CDS	27640695	27640860	0.8	-	0	transcript_id "Ledus.S1G331300.t1"; gene_id "Ledus.S1G331300"
Ledus.S1	AUGUSTUS	exon	27640695	27640860	.	-	.	transcript_id "Ledus.S1G331300.t1"; gene_id "Ledus.S1G331300"
Ledus.S1	AUGUSTUS	intron	27640861	27640979	.	-	.	transcript_id "Ledus.S1G331300.t1"; gene_id "Ledus.S1G331300"
Ledus.S1	AUGUSTUS	CDS	27640980	27641195	0.79	-	0	transcript_id "Ledus.S1G331300.t1"; gene_id "Ledus.S1G331300"
Ledus.S1	AUGUSTUS	exon	27640980	27641195	.	-	.	transcript_id "Ledus.S1G331300.t1"; gene_id "Ledus.S1G331300"
Ledus.S1	AUGUSTUS	start_codon	27641193	27641195	.	-	0	transcript_id "Ledus.S1G331300.t1"; gene_id "Ledus.S1G331300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6431.t1 is derived from g3874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31214026	31215102	.	-	.	Ledus.S1G385200
Ledus.S1	AUGUSTUS	transcript	31214026	31215102	.	-	.	transcript_id "Ledus.S1G385200.t1"; gene_id "Ledus.S1G385200"
Ledus.S1	AUGUSTUS	stop_codon	31214023	31214025	.	-	0	transcript_id "Ledus.S1G385200.t1"; gene_id "Ledus.S1G385200"
Ledus.S1	AUGUSTUS	CDS	31214026	31215102	0.8	-	0	transcript_id "Ledus.S1G385200.t1"; gene_id "Ledus.S1G385200"
Ledus.S1	AUGUSTUS	exon	31214026	31215102	.	-	.	transcript_id "Ledus.S1G385200.t1"; gene_id "Ledus.S1G385200"
Ledus.S1	AUGUSTUS	start_codon	31215100	31215102	.	-	0	transcript_id "Ledus.S1G385200.t1"; gene_id "Ledus.S1G385200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2889.t1 is derived from g324.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4407358	4408779	.	-	.	Ledus.S1G031000
Ledus.S1	AUGUSTUS	transcript	4407358	4408779	.	-	.	transcript_id "Ledus.S1G031000.t1"; gene_id "Ledus.S1G031000"
Ledus.S1	AUGUSTUS	stop_codon	4407355	4407357	.	-	0	transcript_id "Ledus.S1G031000.t1"; gene_id "Ledus.S1G031000"
Ledus.S1	AUGUSTUS	CDS	4407358	4408779	0.5	-	0	transcript_id "Ledus.S1G031000.t1"; gene_id "Ledus.S1G031000"
Ledus.S1	AUGUSTUS	exon	4407358	4408779	.	-	.	transcript_id "Ledus.S1G031000.t1"; gene_id "Ledus.S1G031000"
Ledus.S1	AUGUSTUS	start_codon	4408777	4408779	.	-	0	transcript_id "Ledus.S1G031000.t1"; gene_id "Ledus.S1G031000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6890.t1 is derived from g4334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35004066	35005883	.	+	.	Ledus.S1G431100
Ledus.S1	AUGUSTUS	transcript	35004066	35005883	.	+	.	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	start_codon	35004066	35004068	.	+	0	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	CDS	35004066	35004322	0.62	+	0	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	exon	35004066	35004322	.	+	.	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	intron	35004323	35004411	.	+	.	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	CDS	35004412	35004667	1	+	1	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	exon	35004412	35004667	.	+	.	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	intron	35004668	35004820	.	+	.	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	CDS	35004821	35005184	1	+	0	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	exon	35004821	35005184	.	+	.	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	intron	35005185	35005273	.	+	.	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	CDS	35005274	35005590	1	+	2	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	exon	35005274	35005590	.	+	.	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	intron	35005591	35005688	.	+	.	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	CDS	35005689	35005883	0.94	+	0	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	exon	35005689	35005883	.	+	.	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
Ledus.S1	AUGUSTUS	stop_codon	35005884	35005886	.	+	0	transcript_id "Ledus.S1G431100.t1"; gene_id "Ledus.S1G431100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8352.t1 is derived from g13024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10960499	10962184	.	+	.	Ledus.S5G113000
Ledus.S5	AUGUSTUS	transcript	10960499	10962184	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	start_codon	10960499	10960501	.	+	0	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	CDS	10960499	10960558	0.9	+	0	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	exon	10960499	10960558	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	intron	10960559	10960706	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	CDS	10960707	10960790	1	+	0	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	exon	10960707	10960790	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	intron	10960791	10960875	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	CDS	10960876	10960971	1	+	0	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	exon	10960876	10960971	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	intron	10960972	10961048	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	CDS	10961049	10961138	1	+	0	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	exon	10961049	10961138	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	intron	10961139	10961217	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	CDS	10961218	10961349	1	+	0	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	exon	10961218	10961349	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	intron	10961350	10961428	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	CDS	10961429	10961551	1	+	0	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	exon	10961429	10961551	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	intron	10961552	10961639	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	CDS	10961640	10961759	1	+	0	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	exon	10961640	10961759	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	intron	10961760	10961844	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	CDS	10961845	10962003	1	+	0	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	exon	10961845	10962003	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	intron	10962004	10962097	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	CDS	10962098	10962184	1	+	0	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	exon	10962098	10962184	.	+	.	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
Ledus.S5	AUGUSTUS	stop_codon	10962185	10962187	.	+	0	transcript_id "Ledus.S5G113000.t1"; gene_id "Ledus.S5G113000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9060.t1 is derived from g10090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4301025	4303902	.	+	.	Ledus.S3G053700
Ledus.S3	AUGUSTUS	transcript	4301025	4303902	.	+	.	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	start_codon	4301025	4301027	.	+	0	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	CDS	4301025	4302884	0.97	+	0	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	exon	4301025	4302884	.	+	.	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	intron	4302885	4303088	.	+	.	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	CDS	4303089	4303241	1	+	0	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	exon	4303089	4303241	.	+	.	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	intron	4303242	4303373	.	+	.	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	CDS	4303374	4303445	1	+	0	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	exon	4303374	4303445	.	+	.	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	intron	4303446	4303531	.	+	.	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	CDS	4303532	4303687	0.88	+	0	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	exon	4303532	4303687	.	+	.	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	intron	4303688	4303762	.	+	.	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	CDS	4303763	4303807	0.49	+	0	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	exon	4303763	4303807	.	+	.	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	intron	4303808	4303893	.	+	.	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	CDS	4303894	4303902	0.6	+	0	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	exon	4303894	4303902	.	+	.	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
Ledus.S3	AUGUSTUS	stop_codon	4303903	4303905	.	+	0	transcript_id "Ledus.S3G053700.t1"; gene_id "Ledus.S3G053700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12720.t1 is derived from g6342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14063569	14064993	.	-	.	Ledus.S4G187600
Ledus.S4	AUGUSTUS	transcript	14063569	14064993	.	-	.	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	stop_codon	14063566	14063568	.	-	0	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	CDS	14063569	14063761	1	-	1	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	exon	14063569	14063761	.	-	.	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	intron	14063762	14063842	.	-	.	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	CDS	14063843	14064045	1	-	0	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	exon	14063843	14064045	.	-	.	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	intron	14064046	14064239	.	-	.	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	CDS	14064240	14064392	1	-	0	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	exon	14064240	14064392	.	-	.	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	intron	14064393	14064531	.	-	.	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	CDS	14064532	14064993	1	-	0	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	exon	14064532	14064993	.	-	.	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
Ledus.S4	AUGUSTUS	start_codon	14064991	14064993	.	-	0	transcript_id "Ledus.S4G187600.t1"; gene_id "Ledus.S4G187600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8843.t1 is derived from g9873.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2241215	2241562	.	+	.	Ledus.S3G032000
Ledus.S3	AUGUSTUS	transcript	2241215	2241562	.	+	.	transcript_id "Ledus.S3G032000.t1"; gene_id "Ledus.S3G032000"
Ledus.S3	AUGUSTUS	start_codon	2241215	2241217	.	+	0	transcript_id "Ledus.S3G032000.t1"; gene_id "Ledus.S3G032000"
Ledus.S3	AUGUSTUS	CDS	2241215	2241562	0.93	+	0	transcript_id "Ledus.S3G032000.t1"; gene_id "Ledus.S3G032000"
Ledus.S3	AUGUSTUS	exon	2241215	2241562	.	+	.	transcript_id "Ledus.S3G032000.t1"; gene_id "Ledus.S3G032000"
Ledus.S3	AUGUSTUS	stop_codon	2241563	2241565	.	+	0	transcript_id "Ledus.S3G032000.t1"; gene_id "Ledus.S3G032000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1946.t1 is derived from g8809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13644639	13646978	.	+	.	Ledus.S2G182800
Ledus.S2	AUGUSTUS	transcript	13644639	13646978	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	start_codon	13644639	13644641	.	+	0	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	CDS	13644639	13644649	0.98	+	0	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	exon	13644639	13644649	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	intron	13644650	13644971	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	CDS	13644972	13645060	0.99	+	1	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	exon	13644972	13645060	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	intron	13645061	13645232	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	CDS	13645233	13645411	1	+	2	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	exon	13645233	13645411	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	intron	13645412	13645539	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	CDS	13645540	13645723	1	+	0	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	exon	13645540	13645723	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	intron	13645724	13645809	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	CDS	13645810	13645884	1	+	2	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	exon	13645810	13645884	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	intron	13645885	13645986	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	CDS	13645987	13646096	1	+	2	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	exon	13645987	13646096	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	intron	13646097	13646260	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	CDS	13646261	13646479	1	+	0	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	exon	13646261	13646479	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	intron	13646480	13646557	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	CDS	13646558	13646716	1	+	0	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	exon	13646558	13646716	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	intron	13646717	13646792	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	CDS	13646793	13646978	0.99	+	0	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	exon	13646793	13646978	.	+	.	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
Ledus.S2	AUGUSTUS	stop_codon	13646979	13646981	.	+	0	transcript_id "Ledus.S2G182800.t1"; gene_id "Ledus.S2G182800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4156.t1 is derived from g1592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14995802	14996408	.	-	.	Ledus.S1G157700
Ledus.S1	AUGUSTUS	transcript	14995802	14996408	.	-	.	transcript_id "Ledus.S1G157700.t1"; gene_id "Ledus.S1G157700"
Ledus.S1	AUGUSTUS	stop_codon	14995799	14995801	.	-	0	transcript_id "Ledus.S1G157700.t1"; gene_id "Ledus.S1G157700"
Ledus.S1	AUGUSTUS	CDS	14995802	14995966	0.99	-	0	transcript_id "Ledus.S1G157700.t1"; gene_id "Ledus.S1G157700"
Ledus.S1	AUGUSTUS	exon	14995802	14995966	.	-	.	transcript_id "Ledus.S1G157700.t1"; gene_id "Ledus.S1G157700"
Ledus.S1	AUGUSTUS	intron	14995967	14996066	.	-	.	transcript_id "Ledus.S1G157700.t1"; gene_id "Ledus.S1G157700"
Ledus.S1	AUGUSTUS	CDS	14996067	14996408	0.39	-	0	transcript_id "Ledus.S1G157700.t1"; gene_id "Ledus.S1G157700"
Ledus.S1	AUGUSTUS	exon	14996067	14996408	.	-	.	transcript_id "Ledus.S1G157700.t1"; gene_id "Ledus.S1G157700"
Ledus.S1	AUGUSTUS	start_codon	14996406	14996408	.	-	0	transcript_id "Ledus.S1G157700.t1"; gene_id "Ledus.S1G157700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7149.t1 is derived from g6680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1776764	1780083	.	+	.	Ledus.C7G021000
Ledus.C7	AUGUSTUS	transcript	1776764	1780083	.	+	.	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	start_codon	1776764	1776766	.	+	0	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	CDS	1776764	1776825	0.93	+	0	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	exon	1776764	1776825	.	+	.	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	intron	1776826	1776925	.	+	.	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	CDS	1776926	1776977	0.94	+	1	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	exon	1776926	1776977	.	+	.	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	intron	1776978	1777142	.	+	.	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	CDS	1777143	1777230	0.75	+	0	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	exon	1777143	1777230	.	+	.	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	intron	1777231	1777358	.	+	.	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	CDS	1777359	1777507	0.84	+	2	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	exon	1777359	1777507	.	+	.	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	intron	1777508	1777739	.	+	.	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	CDS	1777740	1777809	1	+	0	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	exon	1777740	1777809	.	+	.	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	intron	1777810	1778113	.	+	.	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	CDS	1778114	1780083	0.91	+	2	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	exon	1778114	1780083	.	+	.	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
Ledus.C7	AUGUSTUS	stop_codon	1780084	1780086	.	+	0	transcript_id "Ledus.C7G021000.t1"; gene_id "Ledus.C7G021000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10823.t1 is derived from g11855.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18048730	18060280	.	+	.	Ledus.S3G230000
Ledus.S3	AUGUSTUS	transcript	18048730	18060280	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	start_codon	18048730	18048732	.	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18048730	18049108	0.99	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18048730	18049108	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18049109	18049361	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18049362	18050328	1	+	2	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18049362	18050328	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18050329	18050485	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18050486	18050721	0.99	+	1	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18050486	18050721	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18050722	18050874	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18050875	18051161	1	+	2	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18050875	18051161	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18051162	18051364	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18051365	18051646	1	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18051365	18051646	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18051647	18051746	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18051747	18051899	1	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18051747	18051899	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18051900	18052113	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18052114	18052377	1	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18052114	18052377	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18052378	18052531	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18052532	18052672	1	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18052532	18052672	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18052673	18052879	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18052880	18053203	0.99	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18052880	18053203	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18053204	18053409	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18053410	18053568	0.63	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18053410	18053568	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18053569	18053689	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18053690	18054853	0.99	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18053690	18054853	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18054854	18055261	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18055262	18055366	1	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18055262	18055366	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18055367	18055457	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18055458	18058586	0.41	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18055458	18058586	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18058587	18058705	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18058706	18058913	1	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18058706	18058913	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18058914	18059002	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18059003	18059161	1	+	2	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18059003	18059161	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18059162	18059246	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18059247	18059329	1	+	2	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18059247	18059329	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18059330	18059431	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18059432	18059674	0.76	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18059432	18059674	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18059675	18060040	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18060041	18060280	0.44	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18060041	18060280	.	+	.	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	stop_codon	18060281	18060283	.	+	0	transcript_id "Ledus.S3G230000.t1"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	transcript	18048730	18060280	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	start_codon	18048730	18048732	.	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18048730	18049108	0.99	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18048730	18049108	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18049109	18049361	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18049362	18050328	0.99	+	2	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18049362	18050328	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18050329	18050509	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18050510	18050721	0.99	+	1	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18050510	18050721	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18050722	18050874	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18050875	18051161	1	+	2	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18050875	18051161	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18051162	18051364	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18051365	18051646	1	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18051365	18051646	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18051647	18051746	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18051747	18051899	1	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18051747	18051899	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18051900	18052113	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18052114	18052377	0.99	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18052114	18052377	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18052378	18052531	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18052532	18052672	1	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18052532	18052672	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18052673	18052879	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18052880	18053203	0.99	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18052880	18053203	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18053204	18053409	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18053410	18053568	0.7	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18053410	18053568	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18053569	18053689	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18053690	18054853	0.98	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18053690	18054853	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18054854	18055261	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18055262	18055366	1	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18055262	18055366	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18055367	18055457	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18055458	18058586	0.45	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18055458	18058586	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18058587	18058705	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18058706	18058913	1	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18058706	18058913	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18058914	18059002	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18059003	18059161	1	+	2	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18059003	18059161	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18059162	18059246	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18059247	18059329	1	+	2	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18059247	18059329	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18059330	18059431	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18059432	18059674	0.65	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18059432	18059674	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	intron	18059675	18060040	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	CDS	18060041	18060280	0.42	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	exon	18060041	18060280	.	+	.	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
Ledus.S3	AUGUSTUS	stop_codon	18060281	18060283	.	+	0	transcript_id "Ledus.S3G230000.t2"; gene_id "Ledus.S3G230000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg1747.t1 is derived from g8609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12304656	12310259	.	+	.	Ledus.S2G162900
Ledus.S2	AUGUSTUS	transcript	12307731	12310259	.	+	.	transcript_id "Ledus.S2G162900.t1"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	start_codon	12307731	12307733	.	+	0	transcript_id "Ledus.S2G162900.t1"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	CDS	12307731	12310259	1	+	0	transcript_id "Ledus.S2G162900.t1"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	exon	12307731	12310259	.	+	.	transcript_id "Ledus.S2G162900.t1"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	stop_codon	12310260	12310262	.	+	0	transcript_id "Ledus.S2G162900.t1"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	transcript	12307614	12310259	.	+	.	transcript_id "Ledus.S2G162900.t2"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	start_codon	12307614	12307616	.	+	0	transcript_id "Ledus.S2G162900.t2"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	CDS	12307614	12310259	0.99	+	0	transcript_id "Ledus.S2G162900.t2"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	exon	12307614	12310259	.	+	.	transcript_id "Ledus.S2G162900.t2"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	stop_codon	12310260	12310262	.	+	0	transcript_id "Ledus.S2G162900.t2"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	transcript	12304656	12310259	.	+	.	transcript_id "Ledus.S2G162900.t3"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	start_codon	12304656	12304658	.	+	0	transcript_id "Ledus.S2G162900.t3"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	CDS	12304656	12310259	0.98	+	0	transcript_id "Ledus.S2G162900.t3"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	exon	12304656	12310259	.	+	.	transcript_id "Ledus.S2G162900.t3"; gene_id "Ledus.S2G162900"
Ledus.S2	AUGUSTUS	stop_codon	12310260	12310262	.	+	0	transcript_id "Ledus.S2G162900.t3"; gene_id "Ledus.S2G162900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4526.t1 is derived from g1963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17517163	17519163	.	-	.	Ledus.S1G194700
Ledus.S1	AUGUSTUS	transcript	17517163	17519163	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	stop_codon	17517160	17517162	.	-	0	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	CDS	17517163	17517279	1	-	0	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	exon	17517163	17517279	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	intron	17517280	17517453	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	CDS	17517454	17517612	1	-	0	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	exon	17517454	17517612	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	intron	17517613	17517738	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	CDS	17517739	17517885	1	-	0	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	exon	17517739	17517885	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	intron	17517886	17517967	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	CDS	17517968	17518126	1	-	0	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	exon	17517968	17518126	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	intron	17518127	17518239	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	CDS	17518240	17518350	1	-	0	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	exon	17518240	17518350	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	intron	17518351	17518440	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	CDS	17518441	17518686	1	-	0	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	exon	17518441	17518686	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	intron	17518687	17518806	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	CDS	17518807	17518912	0.96	-	1	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	exon	17518807	17518912	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	intron	17518913	17518990	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	CDS	17518991	17519163	0.86	-	0	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	exon	17518991	17519163	.	-	.	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
Ledus.S1	AUGUSTUS	start_codon	17519161	17519163	.	-	0	transcript_id "Ledus.S1G194700.t1"; gene_id "Ledus.S1G194700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6936.t1 is derived from g4380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35661170	35661796	.	-	.	Ledus.S1G435700
Ledus.S1	AUGUSTUS	transcript	35661170	35661796	.	-	.	transcript_id "Ledus.S1G435700.t1"; gene_id "Ledus.S1G435700"
Ledus.S1	AUGUSTUS	stop_codon	35661167	35661169	.	-	0	transcript_id "Ledus.S1G435700.t1"; gene_id "Ledus.S1G435700"
Ledus.S1	AUGUSTUS	CDS	35661170	35661796	0.54	-	0	transcript_id "Ledus.S1G435700.t1"; gene_id "Ledus.S1G435700"
Ledus.S1	AUGUSTUS	exon	35661170	35661796	.	-	.	transcript_id "Ledus.S1G435700.t1"; gene_id "Ledus.S1G435700"
Ledus.S1	AUGUSTUS	start_codon	35661794	35661796	.	-	0	transcript_id "Ledus.S1G435700.t1"; gene_id "Ledus.S1G435700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1820.t1 is derived from g8683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12740763	12741386	.	+	.	Ledus.S2G170200
Ledus.S2	AUGUSTUS	transcript	12740763	12741386	.	+	.	transcript_id "Ledus.S2G170200.t1"; gene_id "Ledus.S2G170200"
Ledus.S2	AUGUSTUS	start_codon	12740763	12740765	.	+	0	transcript_id "Ledus.S2G170200.t1"; gene_id "Ledus.S2G170200"
Ledus.S2	AUGUSTUS	CDS	12740763	12741386	0.98	+	0	transcript_id "Ledus.S2G170200.t1"; gene_id "Ledus.S2G170200"
Ledus.S2	AUGUSTUS	exon	12740763	12741386	.	+	.	transcript_id "Ledus.S2G170200.t1"; gene_id "Ledus.S2G170200"
Ledus.S2	AUGUSTUS	stop_codon	12741387	12741389	.	+	0	transcript_id "Ledus.S2G170200.t1"; gene_id "Ledus.S2G170200"
# This transcript jg8978.t2 is derived from g10008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8979.t1 is derived from g10009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3658643	3660022	.	-	.	Ledus.S3G045600
Ledus.S3	AUGUSTUS	transcript	3658643	3660022	.	-	.	transcript_id "Ledus.S3G045600.t1"; gene_id "Ledus.S3G045600"
Ledus.S3	AUGUSTUS	stop_codon	3658640	3658642	.	-	0	transcript_id "Ledus.S3G045600.t1"; gene_id "Ledus.S3G045600"
Ledus.S3	AUGUSTUS	CDS	3658643	3660022	0.96	-	0	transcript_id "Ledus.S3G045600.t1"; gene_id "Ledus.S3G045600"
Ledus.S3	AUGUSTUS	exon	3658643	3660022	.	-	.	transcript_id "Ledus.S3G045600.t1"; gene_id "Ledus.S3G045600"
Ledus.S3	AUGUSTUS	start_codon	3660020	3660022	.	-	0	transcript_id "Ledus.S3G045600.t1"; gene_id "Ledus.S3G045600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5271.t1 is derived from g2710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22807087	22811797	.	+	.	Ledus.S1G269200
Ledus.S1	AUGUSTUS	transcript	22807087	22811797	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	start_codon	22807087	22807089	.	+	0	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	CDS	22807087	22807728	0.93	+	0	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	exon	22807087	22807728	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	intron	22807729	22807955	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	CDS	22807956	22808286	0.26	+	0	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	exon	22807956	22808286	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	intron	22808287	22808498	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	CDS	22808499	22808650	0.4	+	2	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	exon	22808499	22808650	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	intron	22808651	22808760	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	CDS	22808761	22808897	1	+	0	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	exon	22808761	22808897	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	intron	22808898	22809089	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	CDS	22809090	22810332	1	+	1	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	exon	22809090	22810332	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	intron	22810333	22810434	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	CDS	22810435	22810673	0.99	+	0	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	exon	22810435	22810673	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	intron	22810674	22810826	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	CDS	22810827	22811004	1	+	1	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	exon	22810827	22811004	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	intron	22811005	22811167	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	CDS	22811168	22811319	1	+	0	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	exon	22811168	22811319	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	intron	22811320	22811493	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	CDS	22811494	22811653	1	+	1	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	exon	22811494	22811653	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	intron	22811654	22811746	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	CDS	22811747	22811797	0.87	+	0	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	exon	22811747	22811797	.	+	.	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
Ledus.S1	AUGUSTUS	stop_codon	22811798	22811800	.	+	0	transcript_id "Ledus.S1G269200.t1"; gene_id "Ledus.S1G269200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1979.t1 is derived from g8842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14006147	14006534	.	-	.	Ledus.S2G186100
Ledus.S2	AUGUSTUS	transcript	14006147	14006534	.	-	.	transcript_id "Ledus.S2G186100.t1"; gene_id "Ledus.S2G186100"
Ledus.S2	AUGUSTUS	stop_codon	14006144	14006146	.	-	0	transcript_id "Ledus.S2G186100.t1"; gene_id "Ledus.S2G186100"
Ledus.S2	AUGUSTUS	CDS	14006147	14006253	0.51	-	2	transcript_id "Ledus.S2G186100.t1"; gene_id "Ledus.S2G186100"
Ledus.S2	AUGUSTUS	exon	14006147	14006253	.	-	.	transcript_id "Ledus.S2G186100.t1"; gene_id "Ledus.S2G186100"
Ledus.S2	AUGUSTUS	intron	14006254	14006356	.	-	.	transcript_id "Ledus.S2G186100.t1"; gene_id "Ledus.S2G186100"
Ledus.S2	AUGUSTUS	CDS	14006357	14006534	0.64	-	0	transcript_id "Ledus.S2G186100.t1"; gene_id "Ledus.S2G186100"
Ledus.S2	AUGUSTUS	exon	14006357	14006534	.	-	.	transcript_id "Ledus.S2G186100.t1"; gene_id "Ledus.S2G186100"
Ledus.S2	AUGUSTUS	start_codon	14006532	14006534	.	-	0	transcript_id "Ledus.S2G186100.t1"; gene_id "Ledus.S2G186100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11129.t1 is derived from g4747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2086606	2087351	.	-	.	Ledus.S4G028500
Ledus.S4	AUGUSTUS	transcript	2086606	2087351	.	-	.	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	stop_codon	2086603	2086605	.	-	0	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	CDS	2086606	2086725	1	-	0	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	exon	2086606	2086725	.	-	.	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	intron	2086726	2086806	.	-	.	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	CDS	2086807	2086974	1	-	0	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	exon	2086807	2086974	.	-	.	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	intron	2086975	2087061	.	-	.	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	CDS	2087062	2087169	1	-	0	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	exon	2087062	2087169	.	-	.	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	intron	2087170	2087249	.	-	.	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	CDS	2087250	2087351	1	-	0	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	exon	2087250	2087351	.	-	.	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
Ledus.S4	AUGUSTUS	start_codon	2087349	2087351	.	-	0	transcript_id "Ledus.S4G028500.t1"; gene_id "Ledus.S4G028500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10.t1 is derived from g9449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C43	AUGUSTUS	gene	21706	22309	.	-	.	Ledus.C43G000100
Ledus.C43	AUGUSTUS	transcript	21706	22309	.	-	.	transcript_id "Ledus.C43G000100.t1"; gene_id "Ledus.C43G000100"
Ledus.C43	AUGUSTUS	stop_codon	21703	21705	.	-	0	transcript_id "Ledus.C43G000100.t1"; gene_id "Ledus.C43G000100"
Ledus.C43	AUGUSTUS	CDS	21706	21855	0.85	-	0	transcript_id "Ledus.C43G000100.t1"; gene_id "Ledus.C43G000100"
Ledus.C43	AUGUSTUS	exon	21706	21855	.	-	.	transcript_id "Ledus.C43G000100.t1"; gene_id "Ledus.C43G000100"
Ledus.C43	AUGUSTUS	intron	21856	21964	.	-	.	transcript_id "Ledus.C43G000100.t1"; gene_id "Ledus.C43G000100"
Ledus.C43	AUGUSTUS	CDS	21965	22309	0.33	-	0	transcript_id "Ledus.C43G000100.t1"; gene_id "Ledus.C43G000100"
Ledus.C43	AUGUSTUS	exon	21965	22309	.	-	.	transcript_id "Ledus.C43G000100.t1"; gene_id "Ledus.C43G000100"
Ledus.C43	AUGUSTUS	start_codon	22307	22309	.	-	0	transcript_id "Ledus.C43G000100.t1"; gene_id "Ledus.C43G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7244.t1 is derived from g11915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	262835	264142	.	+	.	Ledus.S5G002200
Ledus.S5	AUGUSTUS	transcript	262835	264142	.	+	.	transcript_id "Ledus.S5G002200.t1"; gene_id "Ledus.S5G002200"
Ledus.S5	AUGUSTUS	start_codon	262835	262837	.	+	0	transcript_id "Ledus.S5G002200.t1"; gene_id "Ledus.S5G002200"
Ledus.S5	AUGUSTUS	CDS	262835	264142	0.97	+	0	transcript_id "Ledus.S5G002200.t1"; gene_id "Ledus.S5G002200"
Ledus.S5	AUGUSTUS	exon	262835	264142	.	+	.	transcript_id "Ledus.S5G002200.t1"; gene_id "Ledus.S5G002200"
Ledus.S5	AUGUSTUS	stop_codon	264143	264145	.	+	0	transcript_id "Ledus.S5G002200.t1"; gene_id "Ledus.S5G002200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5492.t1 is derived from g2931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24541109	24544912	.	+	.	Ledus.S1G291300
Ledus.S1	AUGUSTUS	transcript	24541109	24544912	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	start_codon	24541109	24541111	.	+	0	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24541109	24541333	0.96	+	0	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24541109	24541333	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24541334	24541567	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24541568	24541630	1	+	0	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24541568	24541630	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24541631	24541717	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24541718	24542046	0.83	+	0	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24541718	24542046	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24542047	24542149	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24542150	24542342	0.79	+	1	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24542150	24542342	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24542343	24542452	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24542453	24542628	1	+	0	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24542453	24542628	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24542629	24542726	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24542727	24542790	1	+	1	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24542727	24542790	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24542791	24542943	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24542944	24543136	0.98	+	0	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24542944	24543136	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24543137	24543218	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24543219	24543314	1	+	2	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24543219	24543314	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24543315	24543460	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24543461	24543555	1	+	2	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24543461	24543555	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24543556	24543760	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24543761	24543880	1	+	0	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24543761	24543880	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24543881	24544042	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24544043	24544162	1	+	0	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24544043	24544162	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24544163	24544253	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24544254	24544352	1	+	0	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24544254	24544352	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24544353	24544464	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24544465	24544569	1	+	0	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24544465	24544569	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	intron	24544570	24544654	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	CDS	24544655	24544912	0.98	+	0	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	exon	24544655	24544912	.	+	.	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
Ledus.S1	AUGUSTUS	stop_codon	24544913	24544915	.	+	0	transcript_id "Ledus.S1G291300.t1"; gene_id "Ledus.S1G291300"
# This transcript jg11766.t2 is derived from g5385.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11767.t1 is derived from g5386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6667513	6668076	.	+	.	Ledus.S4G092300
Ledus.S4	AUGUSTUS	transcript	6667513	6668076	.	+	.	transcript_id "Ledus.S4G092300.t1"; gene_id "Ledus.S4G092300"
Ledus.S4	AUGUSTUS	start_codon	6667513	6667515	.	+	0	transcript_id "Ledus.S4G092300.t1"; gene_id "Ledus.S4G092300"
Ledus.S4	AUGUSTUS	CDS	6667513	6668076	1	+	0	transcript_id "Ledus.S4G092300.t1"; gene_id "Ledus.S4G092300"
Ledus.S4	AUGUSTUS	exon	6667513	6668076	.	+	.	transcript_id "Ledus.S4G092300.t1"; gene_id "Ledus.S4G092300"
Ledus.S4	AUGUSTUS	stop_codon	6668077	6668079	.	+	0	transcript_id "Ledus.S4G092300.t1"; gene_id "Ledus.S4G092300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4666.t1 is derived from g2104.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18832866	18842124	.	-	.	Ledus.S1G208700
Ledus.S1	AUGUSTUS	transcript	18832866	18842124	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	stop_codon	18832863	18832865	.	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18832866	18832869	1	-	1	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18832866	18832869	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18832870	18832969	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18832970	18832990	0.8	-	1	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18832970	18832990	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18832991	18833060	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18833061	18833210	0.74	-	1	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18833061	18833210	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18833211	18833289	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18833290	18833550	0.89	-	1	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18833290	18833550	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18833551	18833846	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18833847	18833990	0.9	-	1	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18833847	18833990	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18833991	18834073	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18834074	18834227	0.77	-	2	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18834074	18834227	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18834228	18834277	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18834278	18834701	0.98	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18834278	18834701	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18834702	18834794	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18834795	18835010	1	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18834795	18835010	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18835011	18835108	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18835109	18835438	1	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18835109	18835438	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18835439	18835553	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18835554	18835829	1	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18835554	18835829	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18835830	18835938	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18835939	18836403	0.98	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18835939	18836403	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18836404	18836530	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18836531	18836740	0.9	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18836531	18836740	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18836741	18836862	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18836863	18837068	0.98	-	2	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18836863	18837068	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18837069	18837250	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18837251	18837354	1	-	1	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18837251	18837354	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18837355	18837432	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18837433	18837911	1	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18837433	18837911	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18837912	18838043	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18838044	18838318	1	-	2	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18838044	18838318	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18838319	18838453	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18838454	18838719	0.98	-	1	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18838454	18838719	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18838720	18838854	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18838855	18839073	1	-	1	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18838855	18839073	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18839074	18839210	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18839211	18839371	1	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18839211	18839371	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18839372	18839503	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18839504	18839696	1	-	1	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18839504	18839696	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18839697	18839848	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18839849	18839924	1	-	2	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18839849	18839924	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18839925	18840086	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18840087	18840201	1	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18840087	18840201	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18840202	18840329	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18840330	18840476	1	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18840330	18840476	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18840477	18840616	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18840617	18840754	1	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18840617	18840754	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18840755	18840968	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18840969	18841027	1	-	2	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18840969	18841027	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18841028	18841123	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18841124	18841196	1	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18841124	18841196	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18841197	18841301	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18841302	18841436	0.94	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18841302	18841436	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18841437	18841542	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18841543	18841656	0.85	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18841543	18841656	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18841657	18841766	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18841767	18841944	0.87	-	1	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18841767	18841944	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18841945	18842035	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18842036	18842124	0.72	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18842036	18842124	.	-	.	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	start_codon	18842122	18842124	.	-	0	transcript_id "Ledus.S1G208700.t1"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	transcript	18832866	18842124	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	stop_codon	18832863	18832865	.	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18832866	18832869	1	-	1	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18832866	18832869	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18832870	18832969	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18832970	18832990	0.69	-	1	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18832970	18832990	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18832991	18833060	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18833061	18833210	0.62	-	1	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18833061	18833210	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18833211	18833289	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18833290	18833550	0.8	-	1	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18833290	18833550	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18833551	18833846	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18833847	18833990	0.81	-	1	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18833847	18833990	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18833991	18834073	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18834074	18834209	1	-	2	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18834074	18834209	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18834210	18834277	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18834278	18834701	1	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18834278	18834701	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18834702	18834794	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18834795	18835010	1	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18834795	18835010	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18835011	18835108	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18835109	18835438	1	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18835109	18835438	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18835439	18835553	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18835554	18835829	0.99	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18835554	18835829	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18835830	18835938	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18835939	18836403	0.98	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18835939	18836403	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18836404	18836530	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18836531	18836740	0.93	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18836531	18836740	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18836741	18836862	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18836863	18837068	1	-	2	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18836863	18837068	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18837069	18837250	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18837251	18837354	1	-	1	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18837251	18837354	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18837355	18837432	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18837433	18837911	1	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18837433	18837911	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18837912	18838043	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18838044	18838318	1	-	2	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18838044	18838318	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18838319	18838453	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18838454	18838719	0.98	-	1	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18838454	18838719	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18838720	18838854	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18838855	18839073	1	-	1	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18838855	18839073	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18839074	18839210	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18839211	18839371	1	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18839211	18839371	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18839372	18839503	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18839504	18839696	1	-	1	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18839504	18839696	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18839697	18839848	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18839849	18839924	1	-	2	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18839849	18839924	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18839925	18840086	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18840087	18840201	1	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18840087	18840201	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18840202	18840329	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18840330	18840476	1	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18840330	18840476	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18840477	18840616	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18840617	18840754	1	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18840617	18840754	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18840755	18840968	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18840969	18841027	1	-	2	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18840969	18841027	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18841028	18841123	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18841124	18841196	1	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18841124	18841196	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18841197	18841301	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18841302	18841436	0.91	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18841302	18841436	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18841437	18841542	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18841543	18841656	0.76	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18841543	18841656	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18841657	18841766	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18841767	18841944	0.8	-	1	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18841767	18841944	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	intron	18841945	18842035	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	CDS	18842036	18842124	0.73	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	exon	18842036	18842124	.	-	.	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
Ledus.S1	AUGUSTUS	start_codon	18842122	18842124	.	-	0	transcript_id "Ledus.S1G208700.t2"; gene_id "Ledus.S1G208700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4590.t1 is derived from g2027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17954684	17960922	.	-	.	Ledus.S1G201100
Ledus.S1	AUGUSTUS	transcript	17954684	17960922	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	stop_codon	17954681	17954683	.	-	0	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17954684	17954899	1	-	0	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17954684	17954899	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17954900	17955008	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17955009	17955128	0.73	-	0	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17955009	17955128	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17955129	17955214	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17955215	17955403	1	-	0	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17955215	17955403	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17955404	17955552	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17955553	17955678	1	-	0	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17955553	17955678	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17955679	17956734	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17956735	17956863	1	-	0	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17956735	17956863	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17956864	17957152	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17957153	17957386	1	-	0	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17957153	17957386	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17957387	17957535	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17957536	17957602	1	-	1	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17957536	17957602	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17957603	17957701	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17957702	17957985	1	-	0	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17957702	17957985	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17957986	17958115	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17958116	17958231	1	-	2	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17958116	17958231	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17958232	17958389	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17958390	17958687	0.99	-	0	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17958390	17958687	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17958688	17958861	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17958862	17959032	1	-	0	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17958862	17959032	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17959033	17959220	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17959221	17960659	0.48	-	2	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17959221	17960659	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17960660	17960768	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17960769	17960774	0.48	-	2	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17960769	17960774	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	intron	17960775	17960864	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	CDS	17960865	17960922	0.66	-	0	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	exon	17960865	17960922	.	-	.	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
Ledus.S1	AUGUSTUS	start_codon	17960920	17960922	.	-	0	transcript_id "Ledus.S1G201100.t1"; gene_id "Ledus.S1G201100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11988.t1 is derived from g5607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8315387	8316274	.	-	.	Ledus.S4G114400
Ledus.S4	AUGUSTUS	transcript	8315387	8316274	.	-	.	transcript_id "Ledus.S4G114400.t1"; gene_id "Ledus.S4G114400"
Ledus.S4	AUGUSTUS	stop_codon	8315384	8315386	.	-	0	transcript_id "Ledus.S4G114400.t1"; gene_id "Ledus.S4G114400"
Ledus.S4	AUGUSTUS	CDS	8315387	8316035	1	-	1	transcript_id "Ledus.S4G114400.t1"; gene_id "Ledus.S4G114400"
Ledus.S4	AUGUSTUS	exon	8315387	8316035	.	-	.	transcript_id "Ledus.S4G114400.t1"; gene_id "Ledus.S4G114400"
Ledus.S4	AUGUSTUS	intron	8316036	8316125	.	-	.	transcript_id "Ledus.S4G114400.t1"; gene_id "Ledus.S4G114400"
Ledus.S4	AUGUSTUS	CDS	8316126	8316274	1	-	0	transcript_id "Ledus.S4G114400.t1"; gene_id "Ledus.S4G114400"
Ledus.S4	AUGUSTUS	exon	8316126	8316274	.	-	.	transcript_id "Ledus.S4G114400.t1"; gene_id "Ledus.S4G114400"
Ledus.S4	AUGUSTUS	start_codon	8316272	8316274	.	-	0	transcript_id "Ledus.S4G114400.t1"; gene_id "Ledus.S4G114400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10733.t1 is derived from g11763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17404405	17405948	.	-	.	Ledus.S3G221000
Ledus.S3	AUGUSTUS	transcript	17404405	17405948	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	stop_codon	17404402	17404404	.	-	0	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	CDS	17404405	17404494	0.76	-	0	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	exon	17404405	17404494	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	intron	17404495	17404722	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	CDS	17404723	17404846	0.8	-	1	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	exon	17404723	17404846	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	intron	17404847	17404919	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	CDS	17404920	17405092	0.98	-	0	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	exon	17404920	17405092	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	intron	17405093	17405180	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	CDS	17405181	17405270	1	-	0	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	exon	17405181	17405270	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	intron	17405271	17405351	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	CDS	17405352	17405523	1	-	1	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	exon	17405352	17405523	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	intron	17405524	17405606	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	CDS	17405607	17405773	0.94	-	0	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	exon	17405607	17405773	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	intron	17405774	17405861	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	CDS	17405862	17405948	0.47	-	0	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	exon	17405862	17405948	.	-	.	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
Ledus.S3	AUGUSTUS	start_codon	17405946	17405948	.	-	0	transcript_id "Ledus.S3G221000.t1"; gene_id "Ledus.S3G221000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2662.t1 is derived from g95.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1443358	1445767	.	+	.	Ledus.S1G008300
Ledus.S1	AUGUSTUS	transcript	1443358	1445767	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	start_codon	1443358	1443360	.	+	0	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	CDS	1443358	1443513	0.88	+	0	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	exon	1443358	1443513	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	intron	1443514	1443709	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	CDS	1443710	1443763	1	+	0	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	exon	1443710	1443763	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	intron	1443764	1443888	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	CDS	1443889	1443902	1	+	0	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	exon	1443889	1443902	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	intron	1443903	1444144	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	CDS	1444145	1444278	1	+	1	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	exon	1444145	1444278	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	intron	1444279	1444443	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	CDS	1444444	1444473	1	+	2	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	exon	1444444	1444473	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	intron	1444474	1444605	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	CDS	1444606	1444646	0.92	+	2	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	exon	1444606	1444646	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	intron	1444647	1444756	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	CDS	1444757	1444867	1	+	0	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	exon	1444757	1444867	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	intron	1444868	1444981	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	CDS	1444982	1445061	1	+	0	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	exon	1444982	1445061	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	intron	1445062	1445200	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	CDS	1445201	1445376	1	+	1	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	exon	1445201	1445376	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	intron	1445377	1445476	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	CDS	1445477	1445561	1	+	2	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	exon	1445477	1445561	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	intron	1445562	1445682	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	CDS	1445683	1445767	1	+	1	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	exon	1445683	1445767	.	+	.	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
Ledus.S1	AUGUSTUS	stop_codon	1445768	1445770	.	+	0	transcript_id "Ledus.S1G008300.t1"; gene_id "Ledus.S1G008300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1428.t1 is derived from g8289.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10005321	10006450	.	-	.	Ledus.S2G131000
Ledus.S2	AUGUSTUS	transcript	10005321	10006450	.	-	.	transcript_id "Ledus.S2G131000.t1"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	stop_codon	10005318	10005320	.	-	0	transcript_id "Ledus.S2G131000.t1"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	CDS	10005321	10005720	1	-	1	transcript_id "Ledus.S2G131000.t1"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	exon	10005321	10005720	.	-	.	transcript_id "Ledus.S2G131000.t1"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	intron	10005721	10005799	.	-	.	transcript_id "Ledus.S2G131000.t1"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	CDS	10005800	10006255	1	-	1	transcript_id "Ledus.S2G131000.t1"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	exon	10005800	10006255	.	-	.	transcript_id "Ledus.S2G131000.t1"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	intron	10006256	10006409	.	-	.	transcript_id "Ledus.S2G131000.t1"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	CDS	10006410	10006450	0.92	-	0	transcript_id "Ledus.S2G131000.t1"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	exon	10006410	10006450	.	-	.	transcript_id "Ledus.S2G131000.t1"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	start_codon	10006448	10006450	.	-	0	transcript_id "Ledus.S2G131000.t1"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	transcript	10005321	10006450	.	-	.	transcript_id "Ledus.S2G131000.t2"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	stop_codon	10005318	10005320	.	-	0	transcript_id "Ledus.S2G131000.t2"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	CDS	10005321	10005720	1	-	1	transcript_id "Ledus.S2G131000.t2"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	exon	10005321	10005720	.	-	.	transcript_id "Ledus.S2G131000.t2"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	intron	10005721	10005799	.	-	.	transcript_id "Ledus.S2G131000.t2"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	CDS	10005800	10006222	0.99	-	1	transcript_id "Ledus.S2G131000.t2"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	exon	10005800	10006222	.	-	.	transcript_id "Ledus.S2G131000.t2"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	intron	10006223	10006409	.	-	.	transcript_id "Ledus.S2G131000.t2"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	CDS	10006410	10006450	0.94	-	0	transcript_id "Ledus.S2G131000.t2"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	exon	10006410	10006450	.	-	.	transcript_id "Ledus.S2G131000.t2"; gene_id "Ledus.S2G131000"
Ledus.S2	AUGUSTUS	start_codon	10006448	10006450	.	-	0	transcript_id "Ledus.S2G131000.t2"; gene_id "Ledus.S2G131000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9242.t1 is derived from g10272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5587767	5588806	.	-	.	Ledus.S3G071900
Ledus.S3	AUGUSTUS	transcript	5587767	5588806	.	-	.	transcript_id "Ledus.S3G071900.t1"; gene_id "Ledus.S3G071900"
Ledus.S3	AUGUSTUS	stop_codon	5587764	5587766	.	-	0	transcript_id "Ledus.S3G071900.t1"; gene_id "Ledus.S3G071900"
Ledus.S3	AUGUSTUS	CDS	5587767	5588170	0.55	-	2	transcript_id "Ledus.S3G071900.t1"; gene_id "Ledus.S3G071900"
Ledus.S3	AUGUSTUS	exon	5587767	5588170	.	-	.	transcript_id "Ledus.S3G071900.t1"; gene_id "Ledus.S3G071900"
Ledus.S3	AUGUSTUS	intron	5588171	5588335	.	-	.	transcript_id "Ledus.S3G071900.t1"; gene_id "Ledus.S3G071900"
Ledus.S3	AUGUSTUS	CDS	5588336	5588564	0.53	-	0	transcript_id "Ledus.S3G071900.t1"; gene_id "Ledus.S3G071900"
Ledus.S3	AUGUSTUS	exon	5588336	5588564	.	-	.	transcript_id "Ledus.S3G071900.t1"; gene_id "Ledus.S3G071900"
Ledus.S3	AUGUSTUS	intron	5588565	5588680	.	-	.	transcript_id "Ledus.S3G071900.t1"; gene_id "Ledus.S3G071900"
Ledus.S3	AUGUSTUS	CDS	5588681	5588806	0.52	-	0	transcript_id "Ledus.S3G071900.t1"; gene_id "Ledus.S3G071900"
Ledus.S3	AUGUSTUS	exon	5588681	5588806	.	-	.	transcript_id "Ledus.S3G071900.t1"; gene_id "Ledus.S3G071900"
Ledus.S3	AUGUSTUS	start_codon	5588804	5588806	.	-	0	transcript_id "Ledus.S3G071900.t1"; gene_id "Ledus.S3G071900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6204.t1 is derived from g3647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29608192	29609499	.	-	.	Ledus.S1G362500
Ledus.S1	AUGUSTUS	transcript	29608192	29609499	.	-	.	transcript_id "Ledus.S1G362500.t1"; gene_id "Ledus.S1G362500"
Ledus.S1	AUGUSTUS	stop_codon	29608189	29608191	.	-	0	transcript_id "Ledus.S1G362500.t1"; gene_id "Ledus.S1G362500"
Ledus.S1	AUGUSTUS	CDS	29608192	29608203	0.96	-	0	transcript_id "Ledus.S1G362500.t1"; gene_id "Ledus.S1G362500"
Ledus.S1	AUGUSTUS	exon	29608192	29608203	.	-	.	transcript_id "Ledus.S1G362500.t1"; gene_id "Ledus.S1G362500"
Ledus.S1	AUGUSTUS	intron	29608204	29608265	.	-	.	transcript_id "Ledus.S1G362500.t1"; gene_id "Ledus.S1G362500"
Ledus.S1	AUGUSTUS	CDS	29608266	29609260	0.86	-	2	transcript_id "Ledus.S1G362500.t1"; gene_id "Ledus.S1G362500"
Ledus.S1	AUGUSTUS	exon	29608266	29609260	.	-	.	transcript_id "Ledus.S1G362500.t1"; gene_id "Ledus.S1G362500"
Ledus.S1	AUGUSTUS	intron	29609261	29609414	.	-	.	transcript_id "Ledus.S1G362500.t1"; gene_id "Ledus.S1G362500"
Ledus.S1	AUGUSTUS	CDS	29609415	29609499	0.67	-	0	transcript_id "Ledus.S1G362500.t1"; gene_id "Ledus.S1G362500"
Ledus.S1	AUGUSTUS	exon	29609415	29609499	.	-	.	transcript_id "Ledus.S1G362500.t1"; gene_id "Ledus.S1G362500"
Ledus.S1	AUGUSTUS	start_codon	29609497	29609499	.	-	0	transcript_id "Ledus.S1G362500.t1"; gene_id "Ledus.S1G362500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4186.t1 is derived from g1622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15245157	15246344	.	+	.	Ledus.S1G160700
Ledus.S1	AUGUSTUS	transcript	15245157	15246344	.	+	.	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	start_codon	15245157	15245159	.	+	0	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	CDS	15245157	15245297	0.72	+	0	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	exon	15245157	15245297	.	+	.	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	intron	15245298	15245407	.	+	.	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	CDS	15245408	15245721	0.88	+	0	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	exon	15245408	15245721	.	+	.	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	intron	15245722	15245990	.	+	.	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	CDS	15245991	15246061	0.58	+	1	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	exon	15245991	15246061	.	+	.	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	intron	15246062	15246237	.	+	.	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	CDS	15246238	15246344	0.88	+	2	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	exon	15246238	15246344	.	+	.	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
Ledus.S1	AUGUSTUS	stop_codon	15246345	15246347	.	+	0	transcript_id "Ledus.S1G160700.t1"; gene_id "Ledus.S1G160700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg544.t1 is derived from g7405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3144354	3146708	.	+	.	Ledus.S2G042600
Ledus.S2	AUGUSTUS	transcript	3144354	3146708	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	start_codon	3144354	3144356	.	+	0	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	CDS	3144354	3144359	1	+	0	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	exon	3144354	3144359	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	intron	3144360	3144449	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	CDS	3144450	3144566	1	+	0	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	exon	3144450	3144566	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	intron	3144567	3144665	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	CDS	3144666	3144823	1	+	0	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	exon	3144666	3144823	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	intron	3144824	3144942	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	CDS	3144943	3145064	1	+	1	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	exon	3144943	3145064	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	intron	3145065	3145201	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	CDS	3145202	3145395	1	+	2	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	exon	3145202	3145395	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	intron	3145396	3145547	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	CDS	3145548	3145727	1	+	0	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	exon	3145548	3145727	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	intron	3145728	3145881	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	CDS	3145882	3146059	0.46	+	0	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	exon	3145882	3146059	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	intron	3146060	3146357	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	CDS	3146358	3146471	0.98	+	2	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	exon	3146358	3146471	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	intron	3146472	3146556	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	CDS	3146557	3146708	0.98	+	2	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	exon	3146557	3146708	.	+	.	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
Ledus.S2	AUGUSTUS	stop_codon	3146709	3146711	.	+	0	transcript_id "Ledus.S2G042600.t1"; gene_id "Ledus.S2G042600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1928.t1 is derived from g8791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13474373	13474981	.	-	.	Ledus.S2G181000
Ledus.S2	AUGUSTUS	transcript	13474373	13474981	.	-	.	transcript_id "Ledus.S2G181000.t1"; gene_id "Ledus.S2G181000"
Ledus.S2	AUGUSTUS	stop_codon	13474370	13474372	.	-	0	transcript_id "Ledus.S2G181000.t1"; gene_id "Ledus.S2G181000"
Ledus.S2	AUGUSTUS	CDS	13474373	13474438	0.25	-	0	transcript_id "Ledus.S2G181000.t1"; gene_id "Ledus.S2G181000"
Ledus.S2	AUGUSTUS	exon	13474373	13474438	.	-	.	transcript_id "Ledus.S2G181000.t1"; gene_id "Ledus.S2G181000"
Ledus.S2	AUGUSTUS	intron	13474439	13474753	.	-	.	transcript_id "Ledus.S2G181000.t1"; gene_id "Ledus.S2G181000"
Ledus.S2	AUGUSTUS	CDS	13474754	13474981	0.24	-	0	transcript_id "Ledus.S2G181000.t1"; gene_id "Ledus.S2G181000"
Ledus.S2	AUGUSTUS	exon	13474754	13474981	.	-	.	transcript_id "Ledus.S2G181000.t1"; gene_id "Ledus.S2G181000"
Ledus.S2	AUGUSTUS	start_codon	13474979	13474981	.	-	0	transcript_id "Ledus.S2G181000.t1"; gene_id "Ledus.S2G181000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8684.t1 is derived from g9714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1347521	1348510	.	-	.	Ledus.S3G016100
Ledus.S3	AUGUSTUS	transcript	1347521	1348510	.	-	.	transcript_id "Ledus.S3G016100.t1"; gene_id "Ledus.S3G016100"
Ledus.S3	AUGUSTUS	stop_codon	1347518	1347520	.	-	0	transcript_id "Ledus.S3G016100.t1"; gene_id "Ledus.S3G016100"
Ledus.S3	AUGUSTUS	CDS	1347521	1348259	0.64	-	1	transcript_id "Ledus.S3G016100.t1"; gene_id "Ledus.S3G016100"
Ledus.S3	AUGUSTUS	exon	1347521	1348259	.	-	.	transcript_id "Ledus.S3G016100.t1"; gene_id "Ledus.S3G016100"
Ledus.S3	AUGUSTUS	intron	1348260	1348379	.	-	.	transcript_id "Ledus.S3G016100.t1"; gene_id "Ledus.S3G016100"
Ledus.S3	AUGUSTUS	CDS	1348380	1348510	0.59	-	0	transcript_id "Ledus.S3G016100.t1"; gene_id "Ledus.S3G016100"
Ledus.S3	AUGUSTUS	exon	1348380	1348510	.	-	.	transcript_id "Ledus.S3G016100.t1"; gene_id "Ledus.S3G016100"
Ledus.S3	AUGUSTUS	start_codon	1348508	1348510	.	-	0	transcript_id "Ledus.S3G016100.t1"; gene_id "Ledus.S3G016100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6066.t1 is derived from g3509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28806989	28808200	.	+	.	Ledus.S1G348700
Ledus.S1	AUGUSTUS	transcript	28806989	28808200	.	+	.	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	start_codon	28806989	28806991	.	+	0	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	CDS	28806989	28807251	0.5	+	0	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	exon	28806989	28807251	.	+	.	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	intron	28807252	28807517	.	+	.	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	CDS	28807518	28807606	0.92	+	1	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	exon	28807518	28807606	.	+	.	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	intron	28807607	28807687	.	+	.	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	CDS	28807688	28807846	0.75	+	2	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	exon	28807688	28807846	.	+	.	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	intron	28807847	28807931	.	+	.	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	CDS	28807932	28808200	0.56	+	2	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	exon	28807932	28808200	.	+	.	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
Ledus.S1	AUGUSTUS	stop_codon	28808201	28808203	.	+	0	transcript_id "Ledus.S1G348700.t1"; gene_id "Ledus.S1G348700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg408.t1 is derived from g7269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2249212	2250274	.	-	.	Ledus.S2G029000
Ledus.S2	AUGUSTUS	transcript	2249212	2250274	.	-	.	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	stop_codon	2249209	2249211	.	-	0	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	CDS	2249212	2249595	0.96	-	0	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	exon	2249212	2249595	.	-	.	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	intron	2249596	2249683	.	-	.	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	CDS	2249684	2249800	1	-	0	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	exon	2249684	2249800	.	-	.	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	intron	2249801	2249880	.	-	.	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	CDS	2249881	2250051	1	-	0	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	exon	2249881	2250051	.	-	.	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	intron	2250052	2250127	.	-	.	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	CDS	2250128	2250274	1	-	0	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	exon	2250128	2250274	.	-	.	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
Ledus.S2	AUGUSTUS	start_codon	2250272	2250274	.	-	0	transcript_id "Ledus.S2G029000.t1"; gene_id "Ledus.S2G029000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11649.t1 is derived from g5268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5731276	5733322	.	-	.	Ledus.S4G080500
Ledus.S4	AUGUSTUS	transcript	5731276	5733322	.	-	.	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	stop_codon	5731273	5731275	.	-	0	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	CDS	5731276	5731443	0.88	-	0	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	exon	5731276	5731443	.	-	.	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	intron	5731444	5731521	.	-	.	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	CDS	5731522	5731680	1	-	0	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	exon	5731522	5731680	.	-	.	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	intron	5731681	5731781	.	-	.	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	CDS	5731782	5731899	1	-	1	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	exon	5731782	5731899	.	-	.	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	intron	5731900	5731979	.	-	.	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	CDS	5731980	5732257	1	-	0	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	exon	5731980	5732257	.	-	.	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	intron	5732258	5732396	.	-	.	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	CDS	5732397	5732684	0.95	-	0	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	exon	5732397	5732684	.	-	.	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	intron	5732685	5732785	.	-	.	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	CDS	5732786	5733322	0.92	-	0	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	exon	5732786	5733322	.	-	.	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
Ledus.S4	AUGUSTUS	start_codon	5733320	5733322	.	-	0	transcript_id "Ledus.S4G080500.t1"; gene_id "Ledus.S4G080500"
# This transcript jg8536.t2 is derived from g9566.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8537.t1 is derived from g9567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	84261	84991	.	+	.	Ledus.S3G001400
Ledus.S3	AUGUSTUS	transcript	84261	84991	.	+	.	transcript_id "Ledus.S3G001400.t1"; gene_id "Ledus.S3G001400"
Ledus.S3	AUGUSTUS	start_codon	84261	84263	.	+	0	transcript_id "Ledus.S3G001400.t1"; gene_id "Ledus.S3G001400"
Ledus.S3	AUGUSTUS	CDS	84261	84336	0.84	+	0	transcript_id "Ledus.S3G001400.t1"; gene_id "Ledus.S3G001400"
Ledus.S3	AUGUSTUS	exon	84261	84336	.	+	.	transcript_id "Ledus.S3G001400.t1"; gene_id "Ledus.S3G001400"
Ledus.S3	AUGUSTUS	intron	84337	84620	.	+	.	transcript_id "Ledus.S3G001400.t1"; gene_id "Ledus.S3G001400"
Ledus.S3	AUGUSTUS	CDS	84621	84991	0.84	+	2	transcript_id "Ledus.S3G001400.t1"; gene_id "Ledus.S3G001400"
Ledus.S3	AUGUSTUS	exon	84621	84991	.	+	.	transcript_id "Ledus.S3G001400.t1"; gene_id "Ledus.S3G001400"
Ledus.S3	AUGUSTUS	stop_codon	84992	84994	.	+	0	transcript_id "Ledus.S3G001400.t1"; gene_id "Ledus.S3G001400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11493.t1 is derived from g5111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4916999	4920788	.	-	.	Ledus.S4G064900
Ledus.S4	AUGUSTUS	transcript	4916999	4920788	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	stop_codon	4916996	4916998	.	-	0	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4916999	4917114	0.87	-	2	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4916999	4917114	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4917115	4917185	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4917186	4917269	1	-	2	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4917186	4917269	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4917270	4917359	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4917360	4917430	1	-	1	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4917360	4917430	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4917431	4917514	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4917515	4917657	1	-	0	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4917515	4917657	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4917658	4917742	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4917743	4917835	1	-	0	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4917743	4917835	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4917836	4917929	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4917930	4917983	1	-	0	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4917930	4917983	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4917984	4918117	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4918118	4918274	1	-	1	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4918118	4918274	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4918275	4918387	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4918388	4918422	1	-	0	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4918388	4918422	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4918423	4918592	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4918593	4918769	1	-	0	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4918593	4918769	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4918770	4919061	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4919062	4919213	1	-	2	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4919062	4919213	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4919214	4919312	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4919313	4919432	1	-	2	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4919313	4919432	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4919433	4919538	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4919539	4919650	1	-	0	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4919539	4919650	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4919651	4919744	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4919745	4919903	1	-	0	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4919745	4919903	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4919904	4920215	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4920216	4920480	0.5	-	1	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4920216	4920480	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	intron	4920481	4920591	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	CDS	4920592	4920788	0.63	-	0	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	exon	4920592	4920788	.	-	.	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
Ledus.S4	AUGUSTUS	start_codon	4920786	4920788	.	-	0	transcript_id "Ledus.S4G064900.t1"; gene_id "Ledus.S4G064900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4443.t1 is derived from g1879.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17135834	17136199	.	-	.	Ledus.S1G186400
Ledus.S1	AUGUSTUS	transcript	17135834	17136199	.	-	.	transcript_id "Ledus.S1G186400.t1"; gene_id "Ledus.S1G186400"
Ledus.S1	AUGUSTUS	stop_codon	17135831	17135833	.	-	0	transcript_id "Ledus.S1G186400.t1"; gene_id "Ledus.S1G186400"
Ledus.S1	AUGUSTUS	CDS	17135834	17136199	0.81	-	0	transcript_id "Ledus.S1G186400.t1"; gene_id "Ledus.S1G186400"
Ledus.S1	AUGUSTUS	exon	17135834	17136199	.	-	.	transcript_id "Ledus.S1G186400.t1"; gene_id "Ledus.S1G186400"
Ledus.S1	AUGUSTUS	start_codon	17136197	17136199	.	-	0	transcript_id "Ledus.S1G186400.t1"; gene_id "Ledus.S1G186400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1449.t1 is derived from g8310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10254566	10255518	.	+	.	Ledus.S2G133100
Ledus.S2	AUGUSTUS	transcript	10254566	10255518	.	+	.	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	start_codon	10254566	10254568	.	+	0	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	CDS	10254566	10254701	0.95	+	0	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	exon	10254566	10254701	.	+	.	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	intron	10254702	10254813	.	+	.	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	CDS	10254814	10254965	0.55	+	2	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	exon	10254814	10254965	.	+	.	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	intron	10254966	10255057	.	+	.	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	CDS	10255058	10255360	0.95	+	0	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	exon	10255058	10255360	.	+	.	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	intron	10255361	10255440	.	+	.	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	CDS	10255441	10255518	0.67	+	0	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	exon	10255441	10255518	.	+	.	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
Ledus.S2	AUGUSTUS	stop_codon	10255519	10255521	.	+	0	transcript_id "Ledus.S2G133100.t1"; gene_id "Ledus.S2G133100"
# This transcript jg9405.t2 is derived from g10435.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9406.t1 is derived from g10436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6587451	6589598	.	+	.	Ledus.S3G088300
Ledus.S3	AUGUSTUS	transcript	6587451	6589598	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	start_codon	6587451	6587453	.	+	0	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	CDS	6587451	6587735	0.76	+	0	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	exon	6587451	6587735	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	intron	6587736	6587908	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	CDS	6587909	6588055	1	+	0	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	exon	6587909	6588055	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	intron	6588056	6588264	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	CDS	6588265	6588330	1	+	0	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	exon	6588265	6588330	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	intron	6588331	6588449	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	CDS	6588450	6588558	1	+	0	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	exon	6588450	6588558	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	intron	6588559	6588745	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	CDS	6588746	6588822	1	+	2	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	exon	6588746	6588822	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	intron	6588823	6588905	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	CDS	6588906	6588983	1	+	0	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	exon	6588906	6588983	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	intron	6588984	6589139	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	CDS	6589140	6589217	1	+	0	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	exon	6589140	6589217	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	intron	6589218	6589302	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	CDS	6589303	6589362	1	+	0	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	exon	6589303	6589362	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	intron	6589363	6589469	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	CDS	6589470	6589598	0.97	+	0	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	exon	6589470	6589598	.	+	.	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
Ledus.S3	AUGUSTUS	stop_codon	6589599	6589601	.	+	0	transcript_id "Ledus.S3G088300.t1"; gene_id "Ledus.S3G088300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4512.t1 is derived from g1948.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17462713	17464254	.	+	.	Ledus.S1G193300
Ledus.S1	AUGUSTUS	transcript	17462713	17463700	.	+	.	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	start_codon	17462713	17462715	.	+	0	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17462713	17462991	0.9	+	0	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17462713	17462991	.	+	.	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17462992	17463077	.	+	.	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463078	17463160	1	+	0	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463078	17463160	.	+	.	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17463161	17463248	.	+	.	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463249	17463340	1	+	1	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463249	17463340	.	+	.	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17463341	17463420	.	+	.	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463421	17463515	0.98	+	2	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463421	17463515	.	+	.	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17463516	17463586	.	+	.	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463587	17463700	0.66	+	0	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463587	17463700	.	+	.	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	stop_codon	17463701	17463703	.	+	0	transcript_id "Ledus.S1G193300.t1"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	transcript	17462713	17463609	.	+	.	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	start_codon	17462713	17462715	.	+	0	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17462713	17462991	0.93	+	0	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17462713	17462991	.	+	.	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17462992	17463077	.	+	.	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463078	17463160	1	+	0	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463078	17463160	.	+	.	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17463161	17463248	.	+	.	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463249	17463340	1	+	1	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463249	17463340	.	+	.	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17463341	17463420	.	+	.	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463421	17463489	0.73	+	2	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463421	17463489	.	+	.	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17463490	17463586	.	+	.	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463587	17463609	0.64	+	2	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463587	17463609	.	+	.	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	stop_codon	17463610	17463612	.	+	0	transcript_id "Ledus.S1G193300.t2"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	transcript	17462713	17464254	.	+	.	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	start_codon	17462713	17462715	.	+	0	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17462713	17462991	0.95	+	0	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17462713	17462991	.	+	.	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17462992	17463077	.	+	.	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463078	17463160	1	+	0	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463078	17463160	.	+	.	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17463161	17463248	.	+	.	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463249	17463340	1	+	1	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463249	17463340	.	+	.	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17463341	17463420	.	+	.	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463421	17463552	1	+	2	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463421	17463552	.	+	.	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17463553	17463745	.	+	.	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463746	17463842	0.52	+	2	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463746	17463842	.	+	.	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	intron	17463843	17463974	.	+	.	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	CDS	17463975	17464254	0.45	+	1	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	exon	17463975	17464254	.	+	.	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
Ledus.S1	AUGUSTUS	stop_codon	17464255	17464257	.	+	0	transcript_id "Ledus.S1G193300.t3"; gene_id "Ledus.S1G193300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8198.t1 is derived from g12869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9806729	9808325	.	-	.	Ledus.S5G097600
Ledus.S5	AUGUSTUS	transcript	9806729	9808325	.	-	.	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	stop_codon	9806726	9806728	.	-	0	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	CDS	9806729	9807129	1	-	2	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	exon	9806729	9807129	.	-	.	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	intron	9807130	9807208	.	-	.	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	CDS	9807209	9807455	1	-	0	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	exon	9807209	9807455	.	-	.	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	intron	9807456	9807531	.	-	.	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	CDS	9807532	9807728	1	-	2	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	exon	9807532	9807728	.	-	.	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	intron	9807729	9807799	.	-	.	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	CDS	9807800	9808325	0.8	-	0	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	exon	9807800	9808325	.	-	.	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
Ledus.S5	AUGUSTUS	start_codon	9808323	9808325	.	-	0	transcript_id "Ledus.S5G097600.t1"; gene_id "Ledus.S5G097600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2441.t1 is derived from g9304.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18119981	18122149	.	-	.	Ledus.S2G232300
Ledus.S2	AUGUSTUS	transcript	18121158	18122149	.	-	.	transcript_id "Ledus.S2G232300.t1"; gene_id "Ledus.S2G232300"
Ledus.S2	AUGUSTUS	stop_codon	18121155	18121157	.	-	0	transcript_id "Ledus.S2G232300.t1"; gene_id "Ledus.S2G232300"
Ledus.S2	AUGUSTUS	CDS	18121158	18121175	0.79	-	0	transcript_id "Ledus.S2G232300.t1"; gene_id "Ledus.S2G232300"
Ledus.S2	AUGUSTUS	exon	18121158	18121175	.	-	.	transcript_id "Ledus.S2G232300.t1"; gene_id "Ledus.S2G232300"
Ledus.S2	AUGUSTUS	intron	18121176	18121279	.	-	.	transcript_id "Ledus.S2G232300.t1"; gene_id "Ledus.S2G232300"
Ledus.S2	AUGUSTUS	CDS	18121280	18122149	0.49	-	0	transcript_id "Ledus.S2G232300.t1"; gene_id "Ledus.S2G232300"
Ledus.S2	AUGUSTUS	exon	18121280	18122149	.	-	.	transcript_id "Ledus.S2G232300.t1"; gene_id "Ledus.S2G232300"
Ledus.S2	AUGUSTUS	start_codon	18122147	18122149	.	-	0	transcript_id "Ledus.S2G232300.t1"; gene_id "Ledus.S2G232300"
Ledus.S2	AUGUSTUS	transcript	18119981	18122149	.	-	.	transcript_id "Ledus.S2G232300.t2"; gene_id "Ledus.S2G232300"
Ledus.S2	AUGUSTUS	stop_codon	18119978	18119980	.	-	0	transcript_id "Ledus.S2G232300.t2"; gene_id "Ledus.S2G232300"
Ledus.S2	AUGUSTUS	CDS	18119981	18122149	0.96	-	0	transcript_id "Ledus.S2G232300.t2"; gene_id "Ledus.S2G232300"
Ledus.S2	AUGUSTUS	exon	18119981	18122149	.	-	.	transcript_id "Ledus.S2G232300.t2"; gene_id "Ledus.S2G232300"
Ledus.S2	AUGUSTUS	start_codon	18122147	18122149	.	-	0	transcript_id "Ledus.S2G232300.t2"; gene_id "Ledus.S2G232300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5278.t1 is derived from g2717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22835860	22838352	.	+	.	Ledus.S1G269900
Ledus.S1	AUGUSTUS	transcript	22835860	22838352	.	+	.	transcript_id "Ledus.S1G269900.t1"; gene_id "Ledus.S1G269900"
Ledus.S1	AUGUSTUS	start_codon	22835860	22835862	.	+	0	transcript_id "Ledus.S1G269900.t1"; gene_id "Ledus.S1G269900"
Ledus.S1	AUGUSTUS	CDS	22835860	22836060	0.99	+	0	transcript_id "Ledus.S1G269900.t1"; gene_id "Ledus.S1G269900"
Ledus.S1	AUGUSTUS	exon	22835860	22836060	.	+	.	transcript_id "Ledus.S1G269900.t1"; gene_id "Ledus.S1G269900"
Ledus.S1	AUGUSTUS	intron	22836061	22837040	.	+	.	transcript_id "Ledus.S1G269900.t1"; gene_id "Ledus.S1G269900"
Ledus.S1	AUGUSTUS	CDS	22837041	22837214	1	+	0	transcript_id "Ledus.S1G269900.t1"; gene_id "Ledus.S1G269900"
Ledus.S1	AUGUSTUS	exon	22837041	22837214	.	+	.	transcript_id "Ledus.S1G269900.t1"; gene_id "Ledus.S1G269900"
Ledus.S1	AUGUSTUS	intron	22837215	22837287	.	+	.	transcript_id "Ledus.S1G269900.t1"; gene_id "Ledus.S1G269900"
Ledus.S1	AUGUSTUS	CDS	22837288	22838352	1	+	0	transcript_id "Ledus.S1G269900.t1"; gene_id "Ledus.S1G269900"
Ledus.S1	AUGUSTUS	exon	22837288	22838352	.	+	.	transcript_id "Ledus.S1G269900.t1"; gene_id "Ledus.S1G269900"
Ledus.S1	AUGUSTUS	stop_codon	22838353	22838355	.	+	0	transcript_id "Ledus.S1G269900.t1"; gene_id "Ledus.S1G269900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5495.t1 is derived from g2934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24603905	24606013	.	+	.	Ledus.S1G291600
Ledus.S1	AUGUSTUS	transcript	24603905	24606013	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	start_codon	24603905	24603907	.	+	0	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	CDS	24603905	24604004	0.74	+	0	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	exon	24603905	24604004	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	intron	24604005	24604106	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	CDS	24604107	24604270	0.91	+	2	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	exon	24604107	24604270	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	intron	24604271	24604475	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	CDS	24604476	24604535	1	+	0	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	exon	24604476	24604535	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	intron	24604536	24604634	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	CDS	24604635	24604871	1	+	0	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	exon	24604635	24604871	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	intron	24604872	24604967	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	CDS	24604968	24605153	1	+	0	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	exon	24604968	24605153	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	intron	24605154	24605251	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	CDS	24605252	24605509	1	+	0	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	exon	24605252	24605509	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	intron	24605510	24605623	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	CDS	24605624	24606013	0.83	+	0	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	exon	24605624	24606013	.	+	.	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
Ledus.S1	AUGUSTUS	stop_codon	24606014	24606016	.	+	0	transcript_id "Ledus.S1G291600.t1"; gene_id "Ledus.S1G291600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12514.t1 is derived from g6135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12587996	12588385	.	-	.	Ledus.S4G167000
Ledus.S4	AUGUSTUS	transcript	12587996	12588385	.	-	.	transcript_id "Ledus.S4G167000.t1"; gene_id "Ledus.S4G167000"
Ledus.S4	AUGUSTUS	stop_codon	12587993	12587995	.	-	0	transcript_id "Ledus.S4G167000.t1"; gene_id "Ledus.S4G167000"
Ledus.S4	AUGUSTUS	CDS	12587996	12588385	0.38	-	0	transcript_id "Ledus.S4G167000.t1"; gene_id "Ledus.S4G167000"
Ledus.S4	AUGUSTUS	exon	12587996	12588385	.	-	.	transcript_id "Ledus.S4G167000.t1"; gene_id "Ledus.S4G167000"
Ledus.S4	AUGUSTUS	start_codon	12588383	12588385	.	-	0	transcript_id "Ledus.S4G167000.t1"; gene_id "Ledus.S4G167000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9378.t1 is derived from g10408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6443690	6444495	.	-	.	Ledus.S3G085500
Ledus.S3	AUGUSTUS	transcript	6443690	6444495	.	-	.	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	stop_codon	6443687	6443689	.	-	0	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	CDS	6443690	6443780	0.4	-	1	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	exon	6443690	6443780	.	-	.	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	intron	6443781	6444062	.	-	.	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	CDS	6444063	6444155	0.2	-	1	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	exon	6444063	6444155	.	-	.	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	intron	6444156	6444241	.	-	.	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	CDS	6444242	6444252	0.31	-	0	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	exon	6444242	6444252	.	-	.	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	intron	6444253	6444441	.	-	.	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	CDS	6444442	6444495	0.28	-	0	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	exon	6444442	6444495	.	-	.	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
Ledus.S3	AUGUSTUS	start_codon	6444493	6444495	.	-	0	transcript_id "Ledus.S3G085500.t1"; gene_id "Ledus.S3G085500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12875.t1 is derived from g4448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	190254	191878	.	-	.	Ledus.C10G001800
Ledus.C10	AUGUSTUS	transcript	190254	191878	.	-	.	transcript_id "Ledus.C10G001800.t1"; gene_id "Ledus.C10G001800"
Ledus.C10	AUGUSTUS	stop_codon	190251	190253	.	-	0	transcript_id "Ledus.C10G001800.t1"; gene_id "Ledus.C10G001800"
Ledus.C10	AUGUSTUS	CDS	190254	190716	0.9	-	1	transcript_id "Ledus.C10G001800.t1"; gene_id "Ledus.C10G001800"
Ledus.C10	AUGUSTUS	exon	190254	190716	.	-	.	transcript_id "Ledus.C10G001800.t1"; gene_id "Ledus.C10G001800"
Ledus.C10	AUGUSTUS	intron	190717	190908	.	-	.	transcript_id "Ledus.C10G001800.t1"; gene_id "Ledus.C10G001800"
Ledus.C10	AUGUSTUS	CDS	190909	191027	1	-	0	transcript_id "Ledus.C10G001800.t1"; gene_id "Ledus.C10G001800"
Ledus.C10	AUGUSTUS	exon	190909	191027	.	-	.	transcript_id "Ledus.C10G001800.t1"; gene_id "Ledus.C10G001800"
Ledus.C10	AUGUSTUS	intron	191028	191533	.	-	.	transcript_id "Ledus.C10G001800.t1"; gene_id "Ledus.C10G001800"
Ledus.C10	AUGUSTUS	CDS	191534	191878	0.69	-	0	transcript_id "Ledus.C10G001800.t1"; gene_id "Ledus.C10G001800"
Ledus.C10	AUGUSTUS	exon	191534	191878	.	-	.	transcript_id "Ledus.C10G001800.t1"; gene_id "Ledus.C10G001800"
Ledus.C10	AUGUSTUS	start_codon	191876	191878	.	-	0	transcript_id "Ledus.C10G001800.t1"; gene_id "Ledus.C10G001800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4716.t1 is derived from g2154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19223208	19224647	.	-	.	Ledus.S1G213700
Ledus.S1	AUGUSTUS	transcript	19223208	19224647	.	-	.	transcript_id "Ledus.S1G213700.t1"; gene_id "Ledus.S1G213700"
Ledus.S1	AUGUSTUS	stop_codon	19223205	19223207	.	-	0	transcript_id "Ledus.S1G213700.t1"; gene_id "Ledus.S1G213700"
Ledus.S1	AUGUSTUS	CDS	19223208	19224647	0.99	-	0	transcript_id "Ledus.S1G213700.t1"; gene_id "Ledus.S1G213700"
Ledus.S1	AUGUSTUS	exon	19223208	19224647	.	-	.	transcript_id "Ledus.S1G213700.t1"; gene_id "Ledus.S1G213700"
Ledus.S1	AUGUSTUS	start_codon	19224645	19224647	.	-	0	transcript_id "Ledus.S1G213700.t1"; gene_id "Ledus.S1G213700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3876.t1 is derived from g1312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13322653	13323507	.	-	.	Ledus.S1G129700
Ledus.S1	AUGUSTUS	transcript	13322653	13323507	.	-	.	transcript_id "Ledus.S1G129700.t1"; gene_id "Ledus.S1G129700"
Ledus.S1	AUGUSTUS	stop_codon	13322650	13322652	.	-	0	transcript_id "Ledus.S1G129700.t1"; gene_id "Ledus.S1G129700"
Ledus.S1	AUGUSTUS	CDS	13322653	13323507	0.57	-	0	transcript_id "Ledus.S1G129700.t1"; gene_id "Ledus.S1G129700"
Ledus.S1	AUGUSTUS	exon	13322653	13323507	.	-	.	transcript_id "Ledus.S1G129700.t1"; gene_id "Ledus.S1G129700"
Ledus.S1	AUGUSTUS	start_codon	13323505	13323507	.	-	0	transcript_id "Ledus.S1G129700.t1"; gene_id "Ledus.S1G129700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12990.t1 is derived from g6800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1918989	1919243	.	-	.	Ledus.S6G005200
Ledus.S6	AUGUSTUS	transcript	1918989	1919243	.	-	.	transcript_id "Ledus.S6G005200.t1"; gene_id "Ledus.S6G005200"
Ledus.S6	AUGUSTUS	stop_codon	1918986	1918988	.	-	0	transcript_id "Ledus.S6G005200.t1"; gene_id "Ledus.S6G005200"
Ledus.S6	AUGUSTUS	CDS	1918989	1919243	0.68	-	0	transcript_id "Ledus.S6G005200.t1"; gene_id "Ledus.S6G005200"
Ledus.S6	AUGUSTUS	exon	1918989	1919243	.	-	.	transcript_id "Ledus.S6G005200.t1"; gene_id "Ledus.S6G005200"
Ledus.S6	AUGUSTUS	start_codon	1919241	1919243	.	-	0	transcript_id "Ledus.S6G005200.t1"; gene_id "Ledus.S6G005200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8609.t1 is derived from g9639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	579335	581021	.	-	.	Ledus.S3G008600
Ledus.S3	AUGUSTUS	transcript	579335	581021	.	-	.	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	stop_codon	579332	579334	.	-	0	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	CDS	579335	579627	1	-	2	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	exon	579335	579627	.	-	.	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	intron	579628	579711	.	-	.	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	CDS	579712	579746	1	-	1	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	exon	579712	579746	.	-	.	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	intron	579747	579825	.	-	.	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	CDS	579826	580114	1	-	2	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	exon	579826	580114	.	-	.	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	intron	580115	580211	.	-	.	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	CDS	580212	580428	1	-	0	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	exon	580212	580428	.	-	.	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	intron	580429	580520	.	-	.	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	CDS	580521	581021	0.88	-	0	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	exon	580521	581021	.	-	.	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
Ledus.S3	AUGUSTUS	start_codon	581019	581021	.	-	0	transcript_id "Ledus.S3G008600.t1"; gene_id "Ledus.S3G008600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5432.t1 is derived from g2871.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24136742	24137710	.	+	.	Ledus.S1G285300
Ledus.S1	AUGUSTUS	transcript	24136742	24137710	.	+	.	transcript_id "Ledus.S1G285300.t1"; gene_id "Ledus.S1G285300"
Ledus.S1	AUGUSTUS	start_codon	24136742	24136744	.	+	0	transcript_id "Ledus.S1G285300.t1"; gene_id "Ledus.S1G285300"
Ledus.S1	AUGUSTUS	CDS	24136742	24137710	0.54	+	0	transcript_id "Ledus.S1G285300.t1"; gene_id "Ledus.S1G285300"
Ledus.S1	AUGUSTUS	exon	24136742	24137710	.	+	.	transcript_id "Ledus.S1G285300.t1"; gene_id "Ledus.S1G285300"
Ledus.S1	AUGUSTUS	stop_codon	24137711	24137713	.	+	0	transcript_id "Ledus.S1G285300.t1"; gene_id "Ledus.S1G285300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg142.t1 is derived from g7003.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	259968	262997	.	-	.	Ledus.S2G002400
Ledus.S2	AUGUSTUS	transcript	259968	262997	.	-	.	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	stop_codon	259965	259967	.	-	0	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	CDS	259968	260054	1	-	0	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	exon	259968	260054	.	-	.	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	intron	260055	260758	.	-	.	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	CDS	260759	260951	0.77	-	1	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	exon	260759	260951	.	-	.	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	intron	260952	261159	.	-	.	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	CDS	261160	261168	0.88	-	1	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	exon	261160	261168	.	-	.	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	intron	261169	261348	.	-	.	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	CDS	261349	261811	0.9	-	2	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	exon	261349	261811	.	-	.	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	intron	261812	261961	.	-	.	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	CDS	261962	262997	0.57	-	0	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	exon	261962	262997	.	-	.	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	start_codon	262995	262997	.	-	0	transcript_id "Ledus.S2G002400.t1"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	transcript	259968	262997	.	-	.	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	stop_codon	259965	259967	.	-	0	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	CDS	259968	260054	1	-	0	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	exon	259968	260054	.	-	.	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	intron	260055	260758	.	-	.	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	CDS	260759	260922	1	-	2	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	exon	260759	260922	.	-	.	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	intron	260923	261348	.	-	.	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	CDS	261349	261439	0.72	-	0	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	exon	261349	261439	.	-	.	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	intron	261440	261545	.	-	.	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	CDS	261546	261811	0.46	-	2	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	exon	261546	261811	.	-	.	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	intron	261812	261961	.	-	.	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	CDS	261962	262997	0.54	-	0	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	exon	261962	262997	.	-	.	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
Ledus.S2	AUGUSTUS	start_codon	262995	262997	.	-	0	transcript_id "Ledus.S2G002400.t2"; gene_id "Ledus.S2G002400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6614.t1 is derived from g4057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32737870	32740873	.	+	.	Ledus.S1G403500
Ledus.S1	AUGUSTUS	transcript	32737870	32740873	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	start_codon	32737870	32737872	.	+	0	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	CDS	32737870	32738094	0.98	+	0	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	exon	32737870	32738094	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	intron	32738095	32738171	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	CDS	32738172	32738582	0.96	+	0	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	exon	32738172	32738582	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	intron	32738583	32738671	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	CDS	32738672	32738887	1	+	0	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	exon	32738672	32738887	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	intron	32738888	32738974	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	CDS	32738975	32739630	0.89	+	0	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	exon	32738975	32739630	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	intron	32739631	32739741	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	CDS	32739742	32739838	1	+	1	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	exon	32739742	32739838	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	intron	32739839	32739975	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	CDS	32739976	32740032	1	+	0	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	exon	32739976	32740032	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	intron	32740033	32740176	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	CDS	32740177	32740295	1	+	0	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	exon	32740177	32740295	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	intron	32740296	32740403	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	CDS	32740404	32740594	1	+	1	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	exon	32740404	32740594	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	intron	32740595	32740685	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	CDS	32740686	32740873	1	+	2	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	exon	32740686	32740873	.	+	.	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
Ledus.S1	AUGUSTUS	stop_codon	32740874	32740876	.	+	0	transcript_id "Ledus.S1G403500.t1"; gene_id "Ledus.S1G403500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11130.t1 is derived from g4748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2089052	2091589	.	-	.	Ledus.S4G028600
Ledus.S4	AUGUSTUS	transcript	2089052	2090305	.	-	.	transcript_id "Ledus.S4G028600.t1"; gene_id "Ledus.S4G028600"
Ledus.S4	AUGUSTUS	stop_codon	2089049	2089051	.	-	0	transcript_id "Ledus.S4G028600.t1"; gene_id "Ledus.S4G028600"
Ledus.S4	AUGUSTUS	CDS	2089052	2090305	0.86	-	0	transcript_id "Ledus.S4G028600.t1"; gene_id "Ledus.S4G028600"
Ledus.S4	AUGUSTUS	exon	2089052	2090305	.	-	.	transcript_id "Ledus.S4G028600.t1"; gene_id "Ledus.S4G028600"
Ledus.S4	AUGUSTUS	start_codon	2090303	2090305	.	-	0	transcript_id "Ledus.S4G028600.t1"; gene_id "Ledus.S4G028600"
Ledus.S4	AUGUSTUS	transcript	2089052	2091589	.	-	.	transcript_id "Ledus.S4G028600.t2"; gene_id "Ledus.S4G028600"
Ledus.S4	AUGUSTUS	stop_codon	2089049	2089051	.	-	0	transcript_id "Ledus.S4G028600.t2"; gene_id "Ledus.S4G028600"
Ledus.S4	AUGUSTUS	CDS	2089052	2091589	0.72	-	0	transcript_id "Ledus.S4G028600.t2"; gene_id "Ledus.S4G028600"
Ledus.S4	AUGUSTUS	exon	2089052	2091589	.	-	.	transcript_id "Ledus.S4G028600.t2"; gene_id "Ledus.S4G028600"
Ledus.S4	AUGUSTUS	start_codon	2091587	2091589	.	-	0	transcript_id "Ledus.S4G028600.t2"; gene_id "Ledus.S4G028600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5942.t1 is derived from g3385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27980039	27980743	.	-	.	Ledus.S1G336300
Ledus.S1	AUGUSTUS	transcript	27980039	27980743	.	-	.	transcript_id "Ledus.S1G336300.t1"; gene_id "Ledus.S1G336300"
Ledus.S1	AUGUSTUS	stop_codon	27980036	27980038	.	-	0	transcript_id "Ledus.S1G336300.t1"; gene_id "Ledus.S1G336300"
Ledus.S1	AUGUSTUS	CDS	27980039	27980479	0.99	-	0	transcript_id "Ledus.S1G336300.t1"; gene_id "Ledus.S1G336300"
Ledus.S1	AUGUSTUS	exon	27980039	27980479	.	-	.	transcript_id "Ledus.S1G336300.t1"; gene_id "Ledus.S1G336300"
Ledus.S1	AUGUSTUS	intron	27980480	27980620	.	-	.	transcript_id "Ledus.S1G336300.t1"; gene_id "Ledus.S1G336300"
Ledus.S1	AUGUSTUS	CDS	27980621	27980743	0.62	-	0	transcript_id "Ledus.S1G336300.t1"; gene_id "Ledus.S1G336300"
Ledus.S1	AUGUSTUS	exon	27980621	27980743	.	-	.	transcript_id "Ledus.S1G336300.t1"; gene_id "Ledus.S1G336300"
Ledus.S1	AUGUSTUS	start_codon	27980741	27980743	.	-	0	transcript_id "Ledus.S1G336300.t1"; gene_id "Ledus.S1G336300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2593.t1 is derived from g26.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	181396	187822	.	+	.	Ledus.S1G001400
Ledus.S1	AUGUSTUS	transcript	181396	187822	.	+	.	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	start_codon	181396	181398	.	+	0	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	CDS	181396	181495	0.02	+	0	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	exon	181396	181495	.	+	.	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	intron	181496	181583	.	+	.	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	CDS	181584	181660	0.92	+	2	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	exon	181584	181660	.	+	.	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	intron	181661	181818	.	+	.	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	CDS	181819	181856	0.01	+	0	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	exon	181819	181856	.	+	.	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	intron	181857	186927	.	+	.	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	CDS	186928	187090	1	+	1	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	exon	186928	187090	.	+	.	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	intron	187091	187765	.	+	.	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	CDS	187766	187822	0.01	+	0	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	exon	187766	187822	.	+	.	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
Ledus.S1	AUGUSTUS	stop_codon	187823	187825	.	+	0	transcript_id "Ledus.S1G001400.t1"; gene_id "Ledus.S1G001400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10852.t1 is derived from g4470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	92191	95150	.	-	.	Ledus.S4G000800
Ledus.S4	AUGUSTUS	transcript	92191	95150	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	stop_codon	92188	92190	.	-	0	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	CDS	92191	92285	0.86	-	2	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	exon	92191	92285	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	intron	92286	92484	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	CDS	92485	92543	0.74	-	1	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	exon	92485	92543	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	intron	92544	92658	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	CDS	92659	92711	0.75	-	0	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	exon	92659	92711	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	intron	92712	92858	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	CDS	92859	93005	0.98	-	0	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	exon	92859	93005	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	intron	93006	93081	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	CDS	93082	93291	0.41	-	0	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	exon	93082	93291	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	intron	93292	93393	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	CDS	93394	93523	0.69	-	1	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	exon	93394	93523	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	intron	93524	93630	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	CDS	93631	93684	0.99	-	1	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	exon	93631	93684	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	intron	93685	93796	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	CDS	93797	93941	0.96	-	2	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	exon	93797	93941	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	intron	93942	94231	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	CDS	94232	94281	1	-	1	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	exon	94232	94281	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	intron	94282	94393	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	CDS	94394	94434	1	-	0	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	exon	94394	94434	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	intron	94435	94991	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	CDS	94992	95150	1	-	0	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	exon	94992	95150	.	-	.	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
Ledus.S4	AUGUSTUS	start_codon	95148	95150	.	-	0	transcript_id "Ledus.S4G000800.t1"; gene_id "Ledus.S4G000800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4478.t1 is derived from g1914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17256230	17263412	.	+	.	Ledus.S1G189900
Ledus.S1	AUGUSTUS	transcript	17256230	17263412	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	start_codon	17256230	17256232	.	+	0	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17256230	17256338	1	+	0	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17256230	17256338	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17256339	17256409	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17256410	17257441	0.38	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17256410	17257441	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17257442	17257563	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17257564	17257698	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17257564	17257698	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17257699	17257773	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17257774	17258034	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17257774	17258034	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17258035	17258157	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17258158	17258286	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17258158	17258286	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17258287	17258362	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17258363	17258482	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17258363	17258482	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17258483	17258557	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17258558	17258677	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17258558	17258677	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17258678	17258753	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17258754	17258873	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17258754	17258873	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17258874	17258948	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17258949	17259068	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17258949	17259068	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17259069	17259144	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17259145	17259264	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17259145	17259264	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17259265	17259340	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17259341	17259460	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17259341	17259460	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17259461	17259536	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17259537	17259656	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17259537	17259656	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17259657	17259731	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17259732	17259851	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17259732	17259851	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17259852	17259926	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17259927	17260046	0.99	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17259927	17260046	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17260047	17260121	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17260122	17260244	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17260122	17260244	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17260245	17260418	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17260419	17260529	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17260419	17260529	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17260530	17260640	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17260641	17260751	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17260641	17260751	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17260752	17260825	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17260826	17260969	1	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17260826	17260969	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17260970	17261242	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17261243	17261735	0.56	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17261243	17261735	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17261736	17261809	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17261810	17262009	0.69	+	1	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17261810	17262009	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17262010	17262423	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17262424	17262768	0.98	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17262424	17262768	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17262769	17262883	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17262884	17262945	0.99	+	2	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17262884	17262945	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17262946	17263049	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17263050	17263412	1	+	0	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17263050	17263412	.	+	.	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	stop_codon	17263413	17263415	.	+	0	transcript_id "Ledus.S1G189900.t1"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	transcript	17256230	17263412	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	start_codon	17256230	17256232	.	+	0	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17256230	17256338	1	+	0	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17256230	17256338	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17256339	17256409	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17256410	17257441	0.32	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17256410	17257441	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17257442	17257563	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17257564	17257698	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17257564	17257698	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17257699	17257773	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17257774	17258034	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17257774	17258034	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17258035	17258157	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17258158	17258286	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17258158	17258286	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17258287	17258362	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17258363	17258482	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17258363	17258482	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17258483	17258578	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17258579	17258677	0.95	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17258579	17258677	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17258678	17258753	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17258754	17258873	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17258754	17258873	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17258874	17258948	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17258949	17259068	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17258949	17259068	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17259069	17259144	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17259145	17259264	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17259145	17259264	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17259265	17259340	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17259341	17259460	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17259341	17259460	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17259461	17259536	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17259537	17259656	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17259537	17259656	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17259657	17259731	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17259732	17259851	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17259732	17259851	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17259852	17259926	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17259927	17260046	0.95	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17259927	17260046	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17260047	17260121	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17260122	17260244	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17260122	17260244	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17260245	17260418	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17260419	17260529	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17260419	17260529	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17260530	17260640	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17260641	17260751	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17260641	17260751	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17260752	17260825	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17260826	17260969	1	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17260826	17260969	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17260970	17261242	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17261243	17261735	0.47	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17261243	17261735	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17261736	17261809	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17261810	17262009	0.65	+	1	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17261810	17262009	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17262010	17262423	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17262424	17262768	0.98	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17262424	17262768	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17262769	17262883	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17262884	17262945	0.99	+	2	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17262884	17262945	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	intron	17262946	17263049	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	CDS	17263050	17263412	1	+	0	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	exon	17263050	17263412	.	+	.	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
Ledus.S1	AUGUSTUS	stop_codon	17263413	17263415	.	+	0	transcript_id "Ledus.S1G189900.t2"; gene_id "Ledus.S1G189900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12735.t1 is derived from g6357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14156042	14158957	.	-	.	Ledus.S4G189100
Ledus.S4	AUGUSTUS	transcript	14156042	14158957	.	-	.	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	stop_codon	14156039	14156041	.	-	0	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	CDS	14156042	14156371	1	-	0	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	exon	14156042	14156371	.	-	.	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	intron	14156372	14156528	.	-	.	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	CDS	14156529	14156638	0.48	-	2	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	exon	14156529	14156638	.	-	.	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	intron	14156639	14156718	.	-	.	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	CDS	14156719	14156801	0.44	-	1	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	exon	14156719	14156801	.	-	.	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	intron	14156802	14156954	.	-	.	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	CDS	14156955	14158957	0.81	-	0	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	exon	14156955	14158957	.	-	.	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
Ledus.S4	AUGUSTUS	start_codon	14158955	14158957	.	-	0	transcript_id "Ledus.S4G189100.t1"; gene_id "Ledus.S4G189100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4012.t1 is derived from g1448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14071410	14073598	.	+	.	Ledus.S1G143300
Ledus.S1	AUGUSTUS	transcript	14071410	14073598	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	start_codon	14071410	14071412	.	+	0	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	CDS	14071410	14071495	0.81	+	0	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	exon	14071410	14071495	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	intron	14071496	14071590	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	CDS	14071591	14071674	0.95	+	1	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	exon	14071591	14071674	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	intron	14071675	14071739	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	CDS	14071740	14071929	0.81	+	1	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	exon	14071740	14071929	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	intron	14071930	14072365	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	CDS	14072366	14072465	1	+	0	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	exon	14072366	14072465	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	intron	14072466	14072710	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	CDS	14072711	14072922	0.94	+	2	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	exon	14072711	14072922	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	intron	14072923	14073042	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	CDS	14073043	14073126	1	+	0	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	exon	14073043	14073126	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	intron	14073127	14073236	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	CDS	14073237	14073290	1	+	0	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	exon	14073237	14073290	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	intron	14073291	14073412	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	CDS	14073413	14073598	1	+	0	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	exon	14073413	14073598	.	+	.	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
Ledus.S1	AUGUSTUS	stop_codon	14073599	14073601	.	+	0	transcript_id "Ledus.S1G143300.t1"; gene_id "Ledus.S1G143300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5744.t1 is derived from g3183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26436895	26438862	.	-	.	Ledus.S1G316500
Ledus.S1	AUGUSTUS	transcript	26436895	26438532	.	-	.	transcript_id "Ledus.S1G316500.t1"; gene_id "Ledus.S1G316500"
Ledus.S1	AUGUSTUS	stop_codon	26436892	26436894	.	-	0	transcript_id "Ledus.S1G316500.t1"; gene_id "Ledus.S1G316500"
Ledus.S1	AUGUSTUS	CDS	26436895	26438532	1	-	0	transcript_id "Ledus.S1G316500.t1"; gene_id "Ledus.S1G316500"
Ledus.S1	AUGUSTUS	exon	26436895	26438532	.	-	.	transcript_id "Ledus.S1G316500.t1"; gene_id "Ledus.S1G316500"
Ledus.S1	AUGUSTUS	start_codon	26438530	26438532	.	-	0	transcript_id "Ledus.S1G316500.t1"; gene_id "Ledus.S1G316500"
Ledus.S1	AUGUSTUS	transcript	26436895	26438862	.	-	.	transcript_id "Ledus.S1G316500.t2"; gene_id "Ledus.S1G316500"
Ledus.S1	AUGUSTUS	stop_codon	26436892	26436894	.	-	0	transcript_id "Ledus.S1G316500.t2"; gene_id "Ledus.S1G316500"
Ledus.S1	AUGUSTUS	CDS	26436895	26438862	0.77	-	0	transcript_id "Ledus.S1G316500.t2"; gene_id "Ledus.S1G316500"
Ledus.S1	AUGUSTUS	exon	26436895	26438862	.	-	.	transcript_id "Ledus.S1G316500.t2"; gene_id "Ledus.S1G316500"
Ledus.S1	AUGUSTUS	start_codon	26438860	26438862	.	-	0	transcript_id "Ledus.S1G316500.t2"; gene_id "Ledus.S1G316500"
# This transcript jg11032.t2 is derived from g4650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11033.t1 is derived from g4651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1306329	1308965	.	+	.	Ledus.S4G018900
Ledus.S4	AUGUSTUS	transcript	1306329	1308965	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	start_codon	1306329	1306331	.	+	0	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	CDS	1306329	1306374	0.76	+	0	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	exon	1306329	1306374	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	intron	1306375	1306655	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	CDS	1306656	1306790	1	+	2	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	exon	1306656	1306790	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	intron	1306791	1307029	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	CDS	1307030	1307145	1	+	2	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	exon	1307030	1307145	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	intron	1307146	1307288	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	CDS	1307289	1307378	1	+	0	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	exon	1307289	1307378	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	intron	1307379	1307456	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	CDS	1307457	1307521	1	+	0	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	exon	1307457	1307521	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	intron	1307522	1307671	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	CDS	1307672	1307836	1	+	1	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	exon	1307672	1307836	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	intron	1307837	1307946	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	CDS	1307947	1308025	0.81	+	1	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	exon	1307947	1308025	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	intron	1308026	1308115	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	CDS	1308116	1308193	1	+	0	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	exon	1308116	1308193	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	intron	1308194	1308341	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	CDS	1308342	1308416	1	+	0	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	exon	1308342	1308416	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	intron	1308417	1308520	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	CDS	1308521	1308620	0.72	+	0	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	exon	1308521	1308620	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	intron	1308621	1308876	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	CDS	1308877	1308965	0.54	+	2	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	exon	1308877	1308965	.	+	.	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
Ledus.S4	AUGUSTUS	stop_codon	1308966	1308968	.	+	0	transcript_id "Ledus.S4G018900.t1"; gene_id "Ledus.S4G018900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8243.t1 is derived from g12914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10113799	10115640	.	-	.	Ledus.S5G102100
Ledus.S5	AUGUSTUS	transcript	10113799	10115640	.	-	.	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	stop_codon	10113796	10113798	.	-	0	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	CDS	10113799	10114305	0.99	-	0	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	exon	10113799	10114305	.	-	.	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	intron	10114306	10114411	.	-	.	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	CDS	10114412	10114765	0.95	-	0	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	exon	10114412	10114765	.	-	.	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	intron	10114766	10114937	.	-	.	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	CDS	10114938	10115084	1	-	0	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	exon	10114938	10115084	.	-	.	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	intron	10115085	10115229	.	-	.	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	CDS	10115230	10115640	0.99	-	0	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	exon	10115230	10115640	.	-	.	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	start_codon	10115638	10115640	.	-	0	transcript_id "Ledus.S5G102100.t1"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	transcript	10115068	10115640	.	-	.	transcript_id "Ledus.S5G102100.t2"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	stop_codon	10115065	10115067	.	-	0	transcript_id "Ledus.S5G102100.t2"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	CDS	10115068	10115076	0.83	-	0	transcript_id "Ledus.S5G102100.t2"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	exon	10115068	10115076	.	-	.	transcript_id "Ledus.S5G102100.t2"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	intron	10115077	10115229	.	-	.	transcript_id "Ledus.S5G102100.t2"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	CDS	10115230	10115640	0.92	-	0	transcript_id "Ledus.S5G102100.t2"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	exon	10115230	10115640	.	-	.	transcript_id "Ledus.S5G102100.t2"; gene_id "Ledus.S5G102100"
Ledus.S5	AUGUSTUS	start_codon	10115638	10115640	.	-	0	transcript_id "Ledus.S5G102100.t2"; gene_id "Ledus.S5G102100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10887.t1 is derived from g4505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	321564	322900	.	-	.	Ledus.S4G004300
Ledus.S4	AUGUSTUS	transcript	321564	322900	.	-	.	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	stop_codon	321561	321563	.	-	0	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	CDS	321564	321863	1	-	0	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	exon	321564	321863	.	-	.	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	intron	321864	321938	.	-	.	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	CDS	321939	322003	1	-	2	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	exon	321939	322003	.	-	.	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	intron	322004	322077	.	-	.	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	CDS	322078	322613	1	-	1	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	exon	322078	322613	.	-	.	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	intron	322614	322697	.	-	.	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	CDS	322698	322900	0.86	-	0	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	exon	322698	322900	.	-	.	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
Ledus.S4	AUGUSTUS	start_codon	322898	322900	.	-	0	transcript_id "Ledus.S4G004300.t1"; gene_id "Ledus.S4G004300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8100.t1 is derived from g12771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9136354	9139425	.	-	.	Ledus.S5G087800
Ledus.S5	AUGUSTUS	transcript	9136354	9139425	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	stop_codon	9136351	9136353	.	-	0	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	CDS	9136354	9136354	0.99	-	1	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	exon	9136354	9136354	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	intron	9136355	9136426	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	CDS	9136427	9136842	0.99	-	0	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	exon	9136427	9136842	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	intron	9136843	9136938	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	CDS	9136939	9137244	0.97	-	0	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	exon	9136939	9137244	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	intron	9137245	9137447	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	CDS	9137448	9137743	1	-	2	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	exon	9137448	9137743	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	intron	9137744	9137845	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	CDS	9137846	9137948	1	-	0	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	exon	9137846	9137948	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	intron	9137949	9138025	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	CDS	9138026	9138129	1	-	2	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	exon	9138026	9138129	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	intron	9138130	9138209	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	CDS	9138210	9138276	1	-	0	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	exon	9138210	9138276	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	intron	9138277	9138375	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	CDS	9138376	9138498	1	-	0	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	exon	9138376	9138498	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	intron	9138499	9138594	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	CDS	9138595	9139425	1	-	0	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	exon	9138595	9139425	.	-	.	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
Ledus.S5	AUGUSTUS	start_codon	9139423	9139425	.	-	0	transcript_id "Ledus.S5G087800.t1"; gene_id "Ledus.S5G087800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5703.t1 is derived from g3142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26028901	26029262	.	-	.	Ledus.S1G312400
Ledus.S1	AUGUSTUS	transcript	26028901	26029262	.	-	.	transcript_id "Ledus.S1G312400.t1"; gene_id "Ledus.S1G312400"
Ledus.S1	AUGUSTUS	stop_codon	26028898	26028900	.	-	0	transcript_id "Ledus.S1G312400.t1"; gene_id "Ledus.S1G312400"
Ledus.S1	AUGUSTUS	CDS	26028901	26029104	1	-	0	transcript_id "Ledus.S1G312400.t1"; gene_id "Ledus.S1G312400"
Ledus.S1	AUGUSTUS	exon	26028901	26029104	.	-	.	transcript_id "Ledus.S1G312400.t1"; gene_id "Ledus.S1G312400"
Ledus.S1	AUGUSTUS	intron	26029105	26029184	.	-	.	transcript_id "Ledus.S1G312400.t1"; gene_id "Ledus.S1G312400"
Ledus.S1	AUGUSTUS	CDS	26029185	26029262	0.81	-	0	transcript_id "Ledus.S1G312400.t1"; gene_id "Ledus.S1G312400"
Ledus.S1	AUGUSTUS	exon	26029185	26029262	.	-	.	transcript_id "Ledus.S1G312400.t1"; gene_id "Ledus.S1G312400"
Ledus.S1	AUGUSTUS	start_codon	26029260	26029262	.	-	0	transcript_id "Ledus.S1G312400.t1"; gene_id "Ledus.S1G312400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11654.t1 is derived from g5273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5743535	5744882	.	-	.	Ledus.S4G081000
Ledus.S4	AUGUSTUS	transcript	5743535	5744882	.	-	.	transcript_id "Ledus.S4G081000.t1"; gene_id "Ledus.S4G081000"
Ledus.S4	AUGUSTUS	stop_codon	5743532	5743534	.	-	0	transcript_id "Ledus.S4G081000.t1"; gene_id "Ledus.S4G081000"
Ledus.S4	AUGUSTUS	CDS	5743535	5743614	0.62	-	2	transcript_id "Ledus.S4G081000.t1"; gene_id "Ledus.S4G081000"
Ledus.S4	AUGUSTUS	exon	5743535	5743614	.	-	.	transcript_id "Ledus.S4G081000.t1"; gene_id "Ledus.S4G081000"
Ledus.S4	AUGUSTUS	intron	5743615	5743873	.	-	.	transcript_id "Ledus.S4G081000.t1"; gene_id "Ledus.S4G081000"
Ledus.S4	AUGUSTUS	CDS	5743874	5743979	1	-	0	transcript_id "Ledus.S4G081000.t1"; gene_id "Ledus.S4G081000"
Ledus.S4	AUGUSTUS	exon	5743874	5743979	.	-	.	transcript_id "Ledus.S4G081000.t1"; gene_id "Ledus.S4G081000"
Ledus.S4	AUGUSTUS	intron	5743980	5744771	.	-	.	transcript_id "Ledus.S4G081000.t1"; gene_id "Ledus.S4G081000"
Ledus.S4	AUGUSTUS	CDS	5744772	5744882	0.72	-	0	transcript_id "Ledus.S4G081000.t1"; gene_id "Ledus.S4G081000"
Ledus.S4	AUGUSTUS	exon	5744772	5744882	.	-	.	transcript_id "Ledus.S4G081000.t1"; gene_id "Ledus.S4G081000"
Ledus.S4	AUGUSTUS	start_codon	5744880	5744882	.	-	0	transcript_id "Ledus.S4G081000.t1"; gene_id "Ledus.S4G081000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12114.t1 is derived from g5733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9594305	9594628	.	+	.	Ledus.S4G127000
Ledus.S4	AUGUSTUS	transcript	9594305	9594628	.	+	.	transcript_id "Ledus.S4G127000.t1"; gene_id "Ledus.S4G127000"
Ledus.S4	AUGUSTUS	start_codon	9594305	9594307	.	+	0	transcript_id "Ledus.S4G127000.t1"; gene_id "Ledus.S4G127000"
Ledus.S4	AUGUSTUS	CDS	9594305	9594628	0.63	+	0	transcript_id "Ledus.S4G127000.t1"; gene_id "Ledus.S4G127000"
Ledus.S4	AUGUSTUS	exon	9594305	9594628	.	+	.	transcript_id "Ledus.S4G127000.t1"; gene_id "Ledus.S4G127000"
Ledus.S4	AUGUSTUS	stop_codon	9594629	9594631	.	+	0	transcript_id "Ledus.S4G127000.t1"; gene_id "Ledus.S4G127000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3027.t1 is derived from g462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5383861	5386433	.	+	.	Ledus.S1G044800
Ledus.S1	AUGUSTUS	transcript	5383861	5386433	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	start_codon	5383861	5383863	.	+	0	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	CDS	5383861	5383942	1	+	0	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	exon	5383861	5383942	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	intron	5383943	5384041	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	CDS	5384042	5384112	1	+	2	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	exon	5384042	5384112	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	intron	5384113	5385094	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	CDS	5385095	5385406	0.99	+	0	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	exon	5385095	5385406	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	intron	5385407	5385489	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	CDS	5385490	5385550	0.97	+	0	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	exon	5385490	5385550	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	intron	5385551	5385674	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	CDS	5385675	5385799	0.88	+	2	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	exon	5385675	5385799	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	intron	5385800	5385864	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	CDS	5385865	5385927	1	+	0	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	exon	5385865	5385927	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	intron	5385928	5386008	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	CDS	5386009	5386133	1	+	0	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	exon	5386009	5386133	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	intron	5386134	5386219	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	CDS	5386220	5386433	0.59	+	1	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	exon	5386220	5386433	.	+	.	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
Ledus.S1	AUGUSTUS	stop_codon	5386434	5386436	.	+	0	transcript_id "Ledus.S1G044800.t1"; gene_id "Ledus.S1G044800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8555.t1 is derived from g9585.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	153289	157330	.	-	.	Ledus.S3G003200
Ledus.S3	AUGUSTUS	transcript	153289	157330	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	stop_codon	153286	153288	.	-	0	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	153289	153370	0.95	-	1	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	153289	153370	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	153371	153544	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	153545	153580	0.5	-	1	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	153545	153580	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	153581	153678	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	153679	153758	0.55	-	0	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	153679	153758	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	153759	153850	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	153851	153988	1	-	0	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	153851	153988	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	153989	154067	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	154068	154252	0.8	-	2	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	154068	154252	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	154253	154368	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	154369	154555	1	-	0	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	154369	154555	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	154556	154629	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	154630	154709	1	-	2	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	154630	154709	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	154710	154788	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	154789	154793	0.87	-	1	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	154789	154793	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	154794	154952	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	154953	155087	1	-	1	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	154953	155087	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	155088	155166	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	155167	155392	1	-	2	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	155167	155392	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	155393	155478	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	155479	155541	0.78	-	2	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	155479	155541	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	155542	156037	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	156038	156075	0.86	-	1	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	156038	156075	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	156076	156200	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	156201	156248	0.46	-	1	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	156201	156248	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	156249	156425	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	156426	156449	0.62	-	1	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	156426	156449	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	156450	156589	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	156590	156735	1	-	0	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	156590	156735	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	156736	156845	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	156846	156982	1	-	2	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	156846	156982	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	156983	157056	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	157057	157330	1	-	0	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	157057	157330	.	-	.	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	start_codon	157328	157330	.	-	0	transcript_id "Ledus.S3G003200.t1"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	transcript	153289	157330	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	stop_codon	153286	153288	.	-	0	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	153289	153370	0.92	-	1	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	153289	153370	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	153371	153544	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	153545	153580	0.53	-	1	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	153545	153580	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	153581	153678	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	153679	153758	0.61	-	0	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	153679	153758	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	153759	153850	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	153851	153988	1	-	0	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	153851	153988	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	153989	154067	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	154068	154252	0.77	-	2	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	154068	154252	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	154253	154368	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	154369	154555	1	-	0	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	154369	154555	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	154556	154629	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	154630	154852	0.96	-	1	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	154630	154852	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	154853	154952	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	154953	155087	1	-	1	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	154953	155087	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	155088	155166	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	155167	155392	1	-	2	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	155167	155392	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	155393	155478	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	155479	155541	0.8	-	2	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	155479	155541	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	155542	156037	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	156038	156075	0.85	-	1	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	156038	156075	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	156076	156200	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	156201	156248	0.44	-	1	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	156201	156248	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	156249	156425	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	156426	156449	0.49	-	1	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	156426	156449	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	156450	156589	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	156590	156735	1	-	0	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	156590	156735	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	156736	156845	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	156846	156982	1	-	2	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	156846	156982	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	intron	156983	157056	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	CDS	157057	157330	1	-	0	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	exon	157057	157330	.	-	.	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
Ledus.S3	AUGUSTUS	start_codon	157328	157330	.	-	0	transcript_id "Ledus.S3G003200.t2"; gene_id "Ledus.S3G003200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7855.t1 is derived from g12526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7502042	7502328	.	-	.	Ledus.S5G063300
Ledus.S5	AUGUSTUS	transcript	7502042	7502328	.	-	.	transcript_id "Ledus.S5G063300.t1"; gene_id "Ledus.S5G063300"
Ledus.S5	AUGUSTUS	stop_codon	7502039	7502041	.	-	0	transcript_id "Ledus.S5G063300.t1"; gene_id "Ledus.S5G063300"
Ledus.S5	AUGUSTUS	CDS	7502042	7502117	1	-	1	transcript_id "Ledus.S5G063300.t1"; gene_id "Ledus.S5G063300"
Ledus.S5	AUGUSTUS	exon	7502042	7502117	.	-	.	transcript_id "Ledus.S5G063300.t1"; gene_id "Ledus.S5G063300"
Ledus.S5	AUGUSTUS	intron	7502118	7502191	.	-	.	transcript_id "Ledus.S5G063300.t1"; gene_id "Ledus.S5G063300"
Ledus.S5	AUGUSTUS	CDS	7502192	7502328	0.63	-	0	transcript_id "Ledus.S5G063300.t1"; gene_id "Ledus.S5G063300"
Ledus.S5	AUGUSTUS	exon	7502192	7502328	.	-	.	transcript_id "Ledus.S5G063300.t1"; gene_id "Ledus.S5G063300"
Ledus.S5	AUGUSTUS	start_codon	7502326	7502328	.	-	0	transcript_id "Ledus.S5G063300.t1"; gene_id "Ledus.S5G063300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9063.t1 is derived from g10093.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4307863	4311397	.	-	.	Ledus.S3G054000
Ledus.S3	AUGUSTUS	transcript	4307863	4311397	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	stop_codon	4307860	4307862	.	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4307863	4307898	0.96	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4307863	4307898	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4307899	4307981	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4307982	4308086	1	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4307982	4308086	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4308087	4308181	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4308182	4308275	1	-	1	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4308182	4308275	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4308276	4308362	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4308363	4308448	1	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4308363	4308448	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4308449	4308569	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4308570	4308644	1	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4308570	4308644	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4308645	4308722	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4308723	4308782	1	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4308723	4308782	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4308783	4308885	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4308886	4308945	1	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4308886	4308945	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4308946	4309071	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4309072	4309161	1	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4309072	4309161	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4309162	4309374	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4309375	4309422	1	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4309375	4309422	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4309423	4309611	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4309612	4309660	1	-	1	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4309612	4309660	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4309661	4309777	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4309778	4309851	0.98	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4309778	4309851	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4309852	4309935	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4309936	4310019	1	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4309936	4310019	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4310020	4310132	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4310133	4310152	0.97	-	2	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4310133	4310152	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4310153	4310321	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4310322	4310379	1	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4310322	4310379	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4310380	4310568	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4310569	4310628	1	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4310569	4310628	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4310629	4310708	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4310709	4310790	1	-	1	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4310709	4310790	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4310791	4310906	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4310907	4311007	1	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4310907	4311007	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4311008	4311103	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4311104	4311165	1	-	2	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4311104	4311165	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4311166	4311258	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4311259	4311397	0.99	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4311259	4311397	.	-	.	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	start_codon	4311395	4311397	.	-	0	transcript_id "Ledus.S3G054000.t1"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	transcript	4307863	4311397	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	stop_codon	4307860	4307862	.	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4307863	4307898	0.96	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4307863	4307898	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4307899	4307981	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4307982	4308086	1	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4307982	4308086	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4308087	4308181	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4308182	4308275	1	-	1	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4308182	4308275	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4308276	4308362	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4308363	4308448	1	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4308363	4308448	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4308449	4308569	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4308570	4308644	1	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4308570	4308644	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4308645	4308722	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4308723	4308782	1	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4308723	4308782	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4308783	4308885	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4308886	4308945	1	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4308886	4308945	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4308946	4309071	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4309072	4309161	1	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4309072	4309161	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4309162	4309374	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4309375	4309422	1	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4309375	4309422	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4309423	4309611	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4309612	4309660	1	-	1	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4309612	4309660	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4309661	4309777	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4309778	4309842	0.99	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4309778	4309842	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4309843	4309935	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4309936	4310019	1	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4309936	4310019	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4310020	4310132	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4310133	4310152	0.95	-	2	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4310133	4310152	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4310153	4310321	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4310322	4310379	1	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4310322	4310379	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4310380	4310568	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4310569	4310628	1	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4310569	4310628	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4310629	4310708	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4310709	4310790	1	-	1	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4310709	4310790	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4310791	4310906	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4310907	4311007	1	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4310907	4311007	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4311008	4311103	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4311104	4311165	1	-	2	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4311104	4311165	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	intron	4311166	4311258	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	CDS	4311259	4311397	0.97	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	exon	4311259	4311397	.	-	.	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
Ledus.S3	AUGUSTUS	start_codon	4311395	4311397	.	-	0	transcript_id "Ledus.S3G054000.t2"; gene_id "Ledus.S3G054000"
# This transcript jg3706.t2 is derived from g1142.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3707.t1 is derived from g1143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11046522	11046731	.	+	.	Ledus.S1G112800
Ledus.S1	AUGUSTUS	transcript	11046522	11046731	.	+	.	transcript_id "Ledus.S1G112800.t1"; gene_id "Ledus.S1G112800"
Ledus.S1	AUGUSTUS	start_codon	11046522	11046524	.	+	0	transcript_id "Ledus.S1G112800.t1"; gene_id "Ledus.S1G112800"
Ledus.S1	AUGUSTUS	CDS	11046522	11046731	0.87	+	0	transcript_id "Ledus.S1G112800.t1"; gene_id "Ledus.S1G112800"
Ledus.S1	AUGUSTUS	exon	11046522	11046731	.	+	.	transcript_id "Ledus.S1G112800.t1"; gene_id "Ledus.S1G112800"
Ledus.S1	AUGUSTUS	stop_codon	11046732	11046734	.	+	0	transcript_id "Ledus.S1G112800.t1"; gene_id "Ledus.S1G112800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1361.t1 is derived from g8222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9464341	9465719	.	+	.	Ledus.S2G124300
Ledus.S2	AUGUSTUS	transcript	9464341	9465719	.	+	.	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	start_codon	9464341	9464343	.	+	0	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	CDS	9464341	9464488	0.98	+	0	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	exon	9464341	9464488	.	+	.	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	intron	9464489	9464629	.	+	.	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	CDS	9464630	9464691	1	+	2	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	exon	9464630	9464691	.	+	.	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	intron	9464692	9464821	.	+	.	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	CDS	9464822	9464877	1	+	0	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	exon	9464822	9464877	.	+	.	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	intron	9464878	9465017	.	+	.	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	CDS	9465018	9465075	1	+	1	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	exon	9465018	9465075	.	+	.	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	intron	9465076	9465181	.	+	.	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	CDS	9465182	9465384	1	+	0	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	exon	9465182	9465384	.	+	.	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	intron	9465385	9465493	.	+	.	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	CDS	9465494	9465719	0.99	+	1	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	exon	9465494	9465719	.	+	.	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
Ledus.S2	AUGUSTUS	stop_codon	9465720	9465722	.	+	0	transcript_id "Ledus.S2G124300.t1"; gene_id "Ledus.S2G124300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12266.t1 is derived from g5886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10704620	10705100	.	-	.	Ledus.S4G142200
Ledus.S4	AUGUSTUS	transcript	10704620	10705100	.	-	.	transcript_id "Ledus.S4G142200.t1"; gene_id "Ledus.S4G142200"
Ledus.S4	AUGUSTUS	stop_codon	10704617	10704619	.	-	0	transcript_id "Ledus.S4G142200.t1"; gene_id "Ledus.S4G142200"
Ledus.S4	AUGUSTUS	CDS	10704620	10704755	0.95	-	1	transcript_id "Ledus.S4G142200.t1"; gene_id "Ledus.S4G142200"
Ledus.S4	AUGUSTUS	exon	10704620	10704755	.	-	.	transcript_id "Ledus.S4G142200.t1"; gene_id "Ledus.S4G142200"
Ledus.S4	AUGUSTUS	intron	10704756	10704835	.	-	.	transcript_id "Ledus.S4G142200.t1"; gene_id "Ledus.S4G142200"
Ledus.S4	AUGUSTUS	CDS	10704836	10704888	0.95	-	0	transcript_id "Ledus.S4G142200.t1"; gene_id "Ledus.S4G142200"
Ledus.S4	AUGUSTUS	exon	10704836	10704888	.	-	.	transcript_id "Ledus.S4G142200.t1"; gene_id "Ledus.S4G142200"
Ledus.S4	AUGUSTUS	intron	10704889	10704992	.	-	.	transcript_id "Ledus.S4G142200.t1"; gene_id "Ledus.S4G142200"
Ledus.S4	AUGUSTUS	CDS	10704993	10705100	0.33	-	0	transcript_id "Ledus.S4G142200.t1"; gene_id "Ledus.S4G142200"
Ledus.S4	AUGUSTUS	exon	10704993	10705100	.	-	.	transcript_id "Ledus.S4G142200.t1"; gene_id "Ledus.S4G142200"
Ledus.S4	AUGUSTUS	start_codon	10705098	10705100	.	-	0	transcript_id "Ledus.S4G142200.t1"; gene_id "Ledus.S4G142200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4490.t1 is derived from g1926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17315560	17316567	.	+	.	Ledus.S1G191100
Ledus.S1	AUGUSTUS	transcript	17315560	17316567	.	+	.	transcript_id "Ledus.S1G191100.t1"; gene_id "Ledus.S1G191100"
Ledus.S1	AUGUSTUS	start_codon	17315560	17315562	.	+	0	transcript_id "Ledus.S1G191100.t1"; gene_id "Ledus.S1G191100"
Ledus.S1	AUGUSTUS	CDS	17315560	17315749	0.93	+	0	transcript_id "Ledus.S1G191100.t1"; gene_id "Ledus.S1G191100"
Ledus.S1	AUGUSTUS	exon	17315560	17315749	.	+	.	transcript_id "Ledus.S1G191100.t1"; gene_id "Ledus.S1G191100"
Ledus.S1	AUGUSTUS	intron	17315750	17315842	.	+	.	transcript_id "Ledus.S1G191100.t1"; gene_id "Ledus.S1G191100"
Ledus.S1	AUGUSTUS	CDS	17315843	17316567	1	+	2	transcript_id "Ledus.S1G191100.t1"; gene_id "Ledus.S1G191100"
Ledus.S1	AUGUSTUS	exon	17315843	17316567	.	+	.	transcript_id "Ledus.S1G191100.t1"; gene_id "Ledus.S1G191100"
Ledus.S1	AUGUSTUS	stop_codon	17316568	17316570	.	+	0	transcript_id "Ledus.S1G191100.t1"; gene_id "Ledus.S1G191100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12686.t1 is derived from g6308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13877819	13878593	.	-	.	Ledus.S4G184200
Ledus.S4	AUGUSTUS	transcript	13877819	13878593	.	-	.	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	stop_codon	13877816	13877818	.	-	0	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	CDS	13877819	13878000	0.88	-	2	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	exon	13877819	13878000	.	-	.	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	intron	13878001	13878086	.	-	.	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	CDS	13878087	13878162	1	-	0	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	exon	13878087	13878162	.	-	.	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	intron	13878163	13878251	.	-	.	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	CDS	13878252	13878485	1	-	0	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	exon	13878252	13878485	.	-	.	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	intron	13878486	13878575	.	-	.	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	CDS	13878576	13878593	0.98	-	0	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	exon	13878576	13878593	.	-	.	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
Ledus.S4	AUGUSTUS	start_codon	13878591	13878593	.	-	0	transcript_id "Ledus.S4G184200.t1"; gene_id "Ledus.S4G184200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2778.t1 is derived from g212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3445941	3446336	.	+	.	Ledus.S1G019900
Ledus.S1	AUGUSTUS	transcript	3445941	3446336	.	+	.	transcript_id "Ledus.S1G019900.t1"; gene_id "Ledus.S1G019900"
Ledus.S1	AUGUSTUS	start_codon	3445941	3445943	.	+	0	transcript_id "Ledus.S1G019900.t1"; gene_id "Ledus.S1G019900"
Ledus.S1	AUGUSTUS	CDS	3445941	3446336	0.62	+	0	transcript_id "Ledus.S1G019900.t1"; gene_id "Ledus.S1G019900"
Ledus.S1	AUGUSTUS	exon	3445941	3446336	.	+	.	transcript_id "Ledus.S1G019900.t1"; gene_id "Ledus.S1G019900"
Ledus.S1	AUGUSTUS	stop_codon	3446337	3446339	.	+	0	transcript_id "Ledus.S1G019900.t1"; gene_id "Ledus.S1G019900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1742.t1 is derived from g8604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12294820	12295800	.	+	.	Ledus.S2G162400
Ledus.S2	AUGUSTUS	transcript	12294820	12295800	.	+	.	transcript_id "Ledus.S2G162400.t1"; gene_id "Ledus.S2G162400"
Ledus.S2	AUGUSTUS	start_codon	12294820	12294822	.	+	0	transcript_id "Ledus.S2G162400.t1"; gene_id "Ledus.S2G162400"
Ledus.S2	AUGUSTUS	CDS	12294820	12295800	1	+	0	transcript_id "Ledus.S2G162400.t1"; gene_id "Ledus.S2G162400"
Ledus.S2	AUGUSTUS	exon	12294820	12295800	.	+	.	transcript_id "Ledus.S2G162400.t1"; gene_id "Ledus.S2G162400"
Ledus.S2	AUGUSTUS	stop_codon	12295801	12295803	.	+	0	transcript_id "Ledus.S2G162400.t1"; gene_id "Ledus.S2G162400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12885.t1 is derived from g4458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	342430	344807	.	-	.	Ledus.C10G002800
Ledus.C10	AUGUSTUS	transcript	342430	344807	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	stop_codon	342427	342429	.	-	0	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	CDS	342430	342482	0.41	-	2	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	exon	342430	342482	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	intron	342483	342575	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	CDS	342576	342636	0.36	-	0	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	exon	342576	342636	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	intron	342637	343371	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	CDS	343372	343477	0.41	-	1	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	exon	343372	343477	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	intron	343478	343609	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	CDS	343610	343677	1	-	0	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	exon	343610	343677	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	intron	343678	343812	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	CDS	343813	344043	1	-	0	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	exon	343813	344043	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	intron	344044	344139	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	CDS	344140	344275	1	-	1	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	exon	344140	344275	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	intron	344276	344356	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	CDS	344357	344565	1	-	0	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	exon	344357	344565	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	intron	344566	344708	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	CDS	344709	344807	0.47	-	0	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	exon	344709	344807	.	-	.	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
Ledus.C10	AUGUSTUS	start_codon	344805	344807	.	-	0	transcript_id "Ledus.C10G002800.t1"; gene_id "Ledus.C10G002800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1068.t1 is derived from g7929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7218242	7219368	.	+	.	Ledus.S2G095000
Ledus.S2	AUGUSTUS	transcript	7218242	7219368	.	+	.	transcript_id "Ledus.S2G095000.t1"; gene_id "Ledus.S2G095000"
Ledus.S2	AUGUSTUS	start_codon	7218242	7218244	.	+	0	transcript_id "Ledus.S2G095000.t1"; gene_id "Ledus.S2G095000"
Ledus.S2	AUGUSTUS	CDS	7218242	7218811	0.19	+	0	transcript_id "Ledus.S2G095000.t1"; gene_id "Ledus.S2G095000"
Ledus.S2	AUGUSTUS	exon	7218242	7218811	.	+	.	transcript_id "Ledus.S2G095000.t1"; gene_id "Ledus.S2G095000"
Ledus.S2	AUGUSTUS	intron	7218812	7219032	.	+	.	transcript_id "Ledus.S2G095000.t1"; gene_id "Ledus.S2G095000"
Ledus.S2	AUGUSTUS	CDS	7219033	7219368	0.58	+	0	transcript_id "Ledus.S2G095000.t1"; gene_id "Ledus.S2G095000"
Ledus.S2	AUGUSTUS	exon	7219033	7219368	.	+	.	transcript_id "Ledus.S2G095000.t1"; gene_id "Ledus.S2G095000"
Ledus.S2	AUGUSTUS	stop_codon	7219369	7219371	.	+	0	transcript_id "Ledus.S2G095000.t1"; gene_id "Ledus.S2G095000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12752.t1 is derived from g6374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14218885	14219577	.	+	.	Ledus.S4G190800
Ledus.S4	AUGUSTUS	transcript	14218885	14219577	.	+	.	transcript_id "Ledus.S4G190800.t1"; gene_id "Ledus.S4G190800"
Ledus.S4	AUGUSTUS	start_codon	14218885	14218887	.	+	0	transcript_id "Ledus.S4G190800.t1"; gene_id "Ledus.S4G190800"
Ledus.S4	AUGUSTUS	CDS	14218885	14219577	0.41	+	0	transcript_id "Ledus.S4G190800.t1"; gene_id "Ledus.S4G190800"
Ledus.S4	AUGUSTUS	exon	14218885	14219577	.	+	.	transcript_id "Ledus.S4G190800.t1"; gene_id "Ledus.S4G190800"
Ledus.S4	AUGUSTUS	stop_codon	14219578	14219580	.	+	0	transcript_id "Ledus.S4G190800.t1"; gene_id "Ledus.S4G190800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9214.t1 is derived from g10244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5438369	5440090	.	-	.	Ledus.S3G069100
Ledus.S3	AUGUSTUS	transcript	5438369	5440090	.	-	.	transcript_id "Ledus.S3G069100.t1"; gene_id "Ledus.S3G069100"
Ledus.S3	AUGUSTUS	stop_codon	5438366	5438368	.	-	0	transcript_id "Ledus.S3G069100.t1"; gene_id "Ledus.S3G069100"
Ledus.S3	AUGUSTUS	CDS	5438369	5440090	0.43	-	0	transcript_id "Ledus.S3G069100.t1"; gene_id "Ledus.S3G069100"
Ledus.S3	AUGUSTUS	exon	5438369	5440090	.	-	.	transcript_id "Ledus.S3G069100.t1"; gene_id "Ledus.S3G069100"
Ledus.S3	AUGUSTUS	start_codon	5440088	5440090	.	-	0	transcript_id "Ledus.S3G069100.t1"; gene_id "Ledus.S3G069100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8077.t1 is derived from g12748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9059701	9060174	.	+	.	Ledus.S5G085500
Ledus.S5	AUGUSTUS	transcript	9059701	9060174	.	+	.	transcript_id "Ledus.S5G085500.t1"; gene_id "Ledus.S5G085500"
Ledus.S5	AUGUSTUS	start_codon	9059701	9059703	.	+	0	transcript_id "Ledus.S5G085500.t1"; gene_id "Ledus.S5G085500"
Ledus.S5	AUGUSTUS	CDS	9059701	9060174	0.63	+	0	transcript_id "Ledus.S5G085500.t1"; gene_id "Ledus.S5G085500"
Ledus.S5	AUGUSTUS	exon	9059701	9060174	.	+	.	transcript_id "Ledus.S5G085500.t1"; gene_id "Ledus.S5G085500"
Ledus.S5	AUGUSTUS	stop_codon	9060175	9060177	.	+	0	transcript_id "Ledus.S5G085500.t1"; gene_id "Ledus.S5G085500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg813.t1 is derived from g7674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5257181	5257522	.	-	.	Ledus.S2G069500
Ledus.S2	AUGUSTUS	transcript	5257181	5257522	.	-	.	transcript_id "Ledus.S2G069500.t1"; gene_id "Ledus.S2G069500"
Ledus.S2	AUGUSTUS	stop_codon	5257178	5257180	.	-	0	transcript_id "Ledus.S2G069500.t1"; gene_id "Ledus.S2G069500"
Ledus.S2	AUGUSTUS	CDS	5257181	5257522	0.94	-	0	transcript_id "Ledus.S2G069500.t1"; gene_id "Ledus.S2G069500"
Ledus.S2	AUGUSTUS	exon	5257181	5257522	.	-	.	transcript_id "Ledus.S2G069500.t1"; gene_id "Ledus.S2G069500"
Ledus.S2	AUGUSTUS	start_codon	5257520	5257522	.	-	0	transcript_id "Ledus.S2G069500.t1"; gene_id "Ledus.S2G069500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2656.t1 is derived from g89.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1227732	1230637	.	-	.	Ledus.S1G007700
Ledus.S1	AUGUSTUS	transcript	1227732	1230637	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	stop_codon	1227729	1227731	.	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1227732	1227764	1	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1227732	1227764	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1227765	1227858	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1227859	1228002	1	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1227859	1228002	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1228003	1228089	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1228090	1228358	1	-	2	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1228090	1228358	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1228359	1228449	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1228450	1228567	1	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1228450	1228567	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1228568	1228650	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1228651	1228746	0.82	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1228651	1228746	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1228747	1228992	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1228993	1229125	0.66	-	1	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1228993	1229125	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1229126	1229225	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1229226	1229380	0.89	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1229226	1229380	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1229381	1229472	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1229473	1229562	1	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1229473	1229562	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1229563	1229652	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1229653	1229748	1	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1229653	1229748	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1229749	1229835	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1229836	1229934	1	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1229836	1229934	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1229935	1230023	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1230024	1230158	1	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1230024	1230158	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1230159	1230251	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1230252	1230383	1	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1230252	1230383	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1230384	1230468	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1230469	1230528	1	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1230469	1230528	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	intron	1230529	1230625	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	CDS	1230626	1230637	0.28	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	exon	1230626	1230637	.	-	.	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
Ledus.S1	AUGUSTUS	start_codon	1230635	1230637	.	-	0	transcript_id "Ledus.S1G007700.t1"; gene_id "Ledus.S1G007700"
# This transcript jg1641.t2 is derived from g8502.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1642.t1 is derived from g8503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11518562	11519077	.	-	.	Ledus.S2G152400
Ledus.S2	AUGUSTUS	transcript	11518562	11519077	.	-	.	transcript_id "Ledus.S2G152400.t1"; gene_id "Ledus.S2G152400"
Ledus.S2	AUGUSTUS	stop_codon	11518559	11518561	.	-	0	transcript_id "Ledus.S2G152400.t1"; gene_id "Ledus.S2G152400"
Ledus.S2	AUGUSTUS	CDS	11518562	11519077	1	-	0	transcript_id "Ledus.S2G152400.t1"; gene_id "Ledus.S2G152400"
Ledus.S2	AUGUSTUS	exon	11518562	11519077	.	-	.	transcript_id "Ledus.S2G152400.t1"; gene_id "Ledus.S2G152400"
Ledus.S2	AUGUSTUS	start_codon	11519075	11519077	.	-	0	transcript_id "Ledus.S2G152400.t1"; gene_id "Ledus.S2G152400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg329.t1 is derived from g7190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1696913	1697686	.	+	.	Ledus.S2G021100
Ledus.S2	AUGUSTUS	transcript	1696913	1697686	.	+	.	transcript_id "Ledus.S2G021100.t1"; gene_id "Ledus.S2G021100"
Ledus.S2	AUGUSTUS	start_codon	1696913	1696915	.	+	0	transcript_id "Ledus.S2G021100.t1"; gene_id "Ledus.S2G021100"
Ledus.S2	AUGUSTUS	CDS	1696913	1697290	0.68	+	0	transcript_id "Ledus.S2G021100.t1"; gene_id "Ledus.S2G021100"
Ledus.S2	AUGUSTUS	exon	1696913	1697290	.	+	.	transcript_id "Ledus.S2G021100.t1"; gene_id "Ledus.S2G021100"
Ledus.S2	AUGUSTUS	intron	1697291	1697413	.	+	.	transcript_id "Ledus.S2G021100.t1"; gene_id "Ledus.S2G021100"
Ledus.S2	AUGUSTUS	CDS	1697414	1697686	0.68	+	0	transcript_id "Ledus.S2G021100.t1"; gene_id "Ledus.S2G021100"
Ledus.S2	AUGUSTUS	exon	1697414	1697686	.	+	.	transcript_id "Ledus.S2G021100.t1"; gene_id "Ledus.S2G021100"
Ledus.S2	AUGUSTUS	stop_codon	1697687	1697689	.	+	0	transcript_id "Ledus.S2G021100.t1"; gene_id "Ledus.S2G021100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5956.t1 is derived from g3399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28045244	28046061	.	-	.	Ledus.S1G337700
Ledus.S1	AUGUSTUS	transcript	28045244	28046061	.	-	.	transcript_id "Ledus.S1G337700.t1"; gene_id "Ledus.S1G337700"
Ledus.S1	AUGUSTUS	stop_codon	28045241	28045243	.	-	0	transcript_id "Ledus.S1G337700.t1"; gene_id "Ledus.S1G337700"
Ledus.S1	AUGUSTUS	CDS	28045244	28045763	0.94	-	1	transcript_id "Ledus.S1G337700.t1"; gene_id "Ledus.S1G337700"
Ledus.S1	AUGUSTUS	exon	28045244	28045763	.	-	.	transcript_id "Ledus.S1G337700.t1"; gene_id "Ledus.S1G337700"
Ledus.S1	AUGUSTUS	intron	28045764	28045861	.	-	.	transcript_id "Ledus.S1G337700.t1"; gene_id "Ledus.S1G337700"
Ledus.S1	AUGUSTUS	CDS	28045862	28046061	0.94	-	0	transcript_id "Ledus.S1G337700.t1"; gene_id "Ledus.S1G337700"
Ledus.S1	AUGUSTUS	exon	28045862	28046061	.	-	.	transcript_id "Ledus.S1G337700.t1"; gene_id "Ledus.S1G337700"
Ledus.S1	AUGUSTUS	start_codon	28046059	28046061	.	-	0	transcript_id "Ledus.S1G337700.t1"; gene_id "Ledus.S1G337700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7343.t1 is derived from g12014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1289404	1289931	.	-	.	Ledus.S5G012100
Ledus.S5	AUGUSTUS	transcript	1289404	1289931	.	-	.	transcript_id "Ledus.S5G012100.t1"; gene_id "Ledus.S5G012100"
Ledus.S5	AUGUSTUS	stop_codon	1289401	1289403	.	-	0	transcript_id "Ledus.S5G012100.t1"; gene_id "Ledus.S5G012100"
Ledus.S5	AUGUSTUS	CDS	1289404	1289410	0.92	-	1	transcript_id "Ledus.S5G012100.t1"; gene_id "Ledus.S5G012100"
Ledus.S5	AUGUSTUS	exon	1289404	1289410	.	-	.	transcript_id "Ledus.S5G012100.t1"; gene_id "Ledus.S5G012100"
Ledus.S5	AUGUSTUS	intron	1289411	1289590	.	-	.	transcript_id "Ledus.S5G012100.t1"; gene_id "Ledus.S5G012100"
Ledus.S5	AUGUSTUS	CDS	1289591	1289931	0.7	-	0	transcript_id "Ledus.S5G012100.t1"; gene_id "Ledus.S5G012100"
Ledus.S5	AUGUSTUS	exon	1289591	1289931	.	-	.	transcript_id "Ledus.S5G012100.t1"; gene_id "Ledus.S5G012100"
Ledus.S5	AUGUSTUS	start_codon	1289929	1289931	.	-	0	transcript_id "Ledus.S5G012100.t1"; gene_id "Ledus.S5G012100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8747.t1 is derived from g9777.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1772759	1772773	.	-	.	Ledus.S3G022400
Ledus.S3	AUGUSTUS	transcript	1772759	1772773	.	-	.	transcript_id "Ledus.S3G022400.t1"; gene_id "Ledus.S3G022400"
Ledus.S3	AUGUSTUS	stop_codon	1770897	1770899	.	-	0	transcript_id "Ledus.S3G022400.t1"; gene_id "Ledus.S3G022400"
Ledus.S3	AUGUSTUS	CDS	1772759	1772773	0.03	-	0	transcript_id "Ledus.S3G022400.t1"; gene_id "Ledus.S3G022400"
Ledus.S3	AUGUSTUS	exon	1772759	1772773	.	-	.	transcript_id "Ledus.S3G022400.t1"; gene_id "Ledus.S3G022400"
Ledus.S3	AUGUSTUS	start_codon	1772771	1772773	.	-	0	transcript_id "Ledus.S3G022400.t1"; gene_id "Ledus.S3G022400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3500.t1 is derived from g935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8813237	8814265	.	-	.	Ledus.S1G092100
Ledus.S1	AUGUSTUS	transcript	8813237	8814265	.	-	.	transcript_id "Ledus.S1G092100.t1"; gene_id "Ledus.S1G092100"
Ledus.S1	AUGUSTUS	stop_codon	8813234	8813236	.	-	0	transcript_id "Ledus.S1G092100.t1"; gene_id "Ledus.S1G092100"
Ledus.S1	AUGUSTUS	CDS	8813237	8814265	0.81	-	0	transcript_id "Ledus.S1G092100.t1"; gene_id "Ledus.S1G092100"
Ledus.S1	AUGUSTUS	exon	8813237	8814265	.	-	.	transcript_id "Ledus.S1G092100.t1"; gene_id "Ledus.S1G092100"
Ledus.S1	AUGUSTUS	start_codon	8814263	8814265	.	-	0	transcript_id "Ledus.S1G092100.t1"; gene_id "Ledus.S1G092100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4.t1 is derived from g11867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C14	AUGUSTUS	gene	125982	132374	.	-	.	Ledus.C14G000300
Ledus.C14	AUGUSTUS	transcript	125982	132374	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	stop_codon	125979	125981	.	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	125982	126189	0.91	-	1	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	125982	126189	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	126190	126285	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	126286	126458	1	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	126286	126458	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	126459	126541	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	126542	126730	0.98	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	126542	126730	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	126731	126831	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	126832	126927	0.97	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	126832	126927	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	126928	127041	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	127042	127170	0.96	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	127042	127170	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	127171	127257	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	127258	127449	1	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	127258	127449	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	127450	127546	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	127547	127660	1	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	127547	127660	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	127661	127780	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	127781	127921	0.8	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	127781	127921	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	127922	128078	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	128079	128192	0.72	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	128079	128192	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	128193	128305	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	128306	128473	0.71	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	128306	128473	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	128474	128555	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	128556	128790	1	-	1	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	128556	128790	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	128791	128877	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	128878	129005	1	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	128878	129005	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	129006	129124	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	129125	129220	1	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	129125	129220	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	129221	129293	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	129294	129389	1	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	129294	129389	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	129390	129566	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	129567	129640	1	-	2	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	129567	129640	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	129641	129716	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	129717	129786	1	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	129717	129786	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	129787	129873	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	129874	129983	1	-	2	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	129874	129983	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	129984	130122	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	130123	130261	1	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	130123	130261	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	130262	130361	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	130362	130483	1	-	2	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	130362	130483	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	130484	130626	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	130627	130747	1	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	130627	130747	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	130748	130836	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	130837	131014	1	-	1	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	130837	131014	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	131015	131373	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	131374	131532	1	-	1	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	131374	131532	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	131533	131634	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	131635	131748	1	-	1	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	131635	131748	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	131749	131930	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	131931	132110	1	-	1	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	131931	132110	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	intron	132111	132294	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	CDS	132295	132374	0.98	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	exon	132295	132374	.	-	.	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
Ledus.C14	AUGUSTUS	start_codon	132372	132374	.	-	0	transcript_id "Ledus.C14G000300.t1"; gene_id "Ledus.C14G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12219.t1 is derived from g5838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10431247	10433777	.	+	.	Ledus.S4G137500
Ledus.S4	AUGUSTUS	transcript	10431247	10433777	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	start_codon	10431247	10431249	.	+	0	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	CDS	10431247	10431273	0.96	+	0	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	exon	10431247	10431273	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	intron	10431274	10431429	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	CDS	10431430	10431453	0.99	+	0	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	exon	10431430	10431453	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	intron	10431454	10431750	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	CDS	10431751	10431822	0.89	+	0	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	exon	10431751	10431822	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	intron	10431823	10431915	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	CDS	10431916	10432056	0.95	+	0	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	exon	10431916	10432056	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	intron	10432057	10432155	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	CDS	10432156	10433016	0.95	+	0	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	exon	10432156	10433016	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	intron	10433017	10433121	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	CDS	10433122	10433216	0.95	+	0	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	exon	10433122	10433216	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	intron	10433217	10433389	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	CDS	10433390	10433528	0.97	+	1	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	exon	10433390	10433528	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	intron	10433529	10433681	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	CDS	10433682	10433777	0.65	+	0	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	exon	10433682	10433777	.	+	.	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
Ledus.S4	AUGUSTUS	stop_codon	10433778	10433780	.	+	0	transcript_id "Ledus.S4G137500.t1"; gene_id "Ledus.S4G137500"
# This transcript jg9914.t2 is derived from g10944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9914.t3 is derived from g10944.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9915.t1 is derived from g10945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11199689	11201472	.	+	.	Ledus.S3G139200
Ledus.S3	AUGUSTUS	transcript	11199689	11201472	.	+	.	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	start_codon	11199689	11199691	.	+	0	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	CDS	11199689	11199844	0.86	+	0	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	exon	11199689	11199844	.	+	.	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	intron	11199845	11199918	.	+	.	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	CDS	11199919	11200194	1	+	0	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	exon	11199919	11200194	.	+	.	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	intron	11200195	11200312	.	+	.	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	CDS	11200313	11200572	1	+	0	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	exon	11200313	11200572	.	+	.	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	intron	11200573	11200676	.	+	.	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	CDS	11200677	11201472	1	+	1	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	exon	11200677	11201472	.	+	.	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
Ledus.S3	AUGUSTUS	stop_codon	11201473	11201475	.	+	0	transcript_id "Ledus.S3G139200.t1"; gene_id "Ledus.S3G139200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10623.t1 is derived from g11653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16556412	16556750	.	-	.	Ledus.S3G210000
Ledus.S3	AUGUSTUS	transcript	16556412	16556750	.	-	.	transcript_id "Ledus.S3G210000.t1"; gene_id "Ledus.S3G210000"
Ledus.S3	AUGUSTUS	stop_codon	16556409	16556411	.	-	0	transcript_id "Ledus.S3G210000.t1"; gene_id "Ledus.S3G210000"
Ledus.S3	AUGUSTUS	CDS	16556412	16556750	0.85	-	0	transcript_id "Ledus.S3G210000.t1"; gene_id "Ledus.S3G210000"
Ledus.S3	AUGUSTUS	exon	16556412	16556750	.	-	.	transcript_id "Ledus.S3G210000.t1"; gene_id "Ledus.S3G210000"
Ledus.S3	AUGUSTUS	start_codon	16556748	16556750	.	-	0	transcript_id "Ledus.S3G210000.t1"; gene_id "Ledus.S3G210000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3804.t1 is derived from g1240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12412295	12413038	.	-	.	Ledus.S1G122500
Ledus.S1	AUGUSTUS	transcript	12412295	12413038	.	-	.	transcript_id "Ledus.S1G122500.t1"; gene_id "Ledus.S1G122500"
Ledus.S1	AUGUSTUS	stop_codon	12412292	12412294	.	-	0	transcript_id "Ledus.S1G122500.t1"; gene_id "Ledus.S1G122500"
Ledus.S1	AUGUSTUS	CDS	12412295	12413038	0.74	-	0	transcript_id "Ledus.S1G122500.t1"; gene_id "Ledus.S1G122500"
Ledus.S1	AUGUSTUS	exon	12412295	12413038	.	-	.	transcript_id "Ledus.S1G122500.t1"; gene_id "Ledus.S1G122500"
Ledus.S1	AUGUSTUS	start_codon	12413036	12413038	.	-	0	transcript_id "Ledus.S1G122500.t1"; gene_id "Ledus.S1G122500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9747.t1 is derived from g10777.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9564926	9565414	.	-	.	Ledus.S3G122400
Ledus.S3	AUGUSTUS	transcript	9564926	9565414	.	-	.	transcript_id "Ledus.S3G122400.t1"; gene_id "Ledus.S3G122400"
Ledus.S3	AUGUSTUS	stop_codon	9564923	9564925	.	-	0	transcript_id "Ledus.S3G122400.t1"; gene_id "Ledus.S3G122400"
Ledus.S3	AUGUSTUS	CDS	9564926	9565000	0.54	-	0	transcript_id "Ledus.S3G122400.t1"; gene_id "Ledus.S3G122400"
Ledus.S3	AUGUSTUS	exon	9564926	9565000	.	-	.	transcript_id "Ledus.S3G122400.t1"; gene_id "Ledus.S3G122400"
Ledus.S3	AUGUSTUS	intron	9565001	9565252	.	-	.	transcript_id "Ledus.S3G122400.t1"; gene_id "Ledus.S3G122400"
Ledus.S3	AUGUSTUS	CDS	9565253	9565414	0.93	-	0	transcript_id "Ledus.S3G122400.t1"; gene_id "Ledus.S3G122400"
Ledus.S3	AUGUSTUS	exon	9565253	9565414	.	-	.	transcript_id "Ledus.S3G122400.t1"; gene_id "Ledus.S3G122400"
Ledus.S3	AUGUSTUS	start_codon	9565412	9565414	.	-	0	transcript_id "Ledus.S3G122400.t1"; gene_id "Ledus.S3G122400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1010.t1 is derived from g7871.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6744365	6747145	.	+	.	Ledus.S2G089200
Ledus.S2	AUGUSTUS	transcript	6744365	6747145	.	+	.	transcript_id "Ledus.S2G089200.t1"; gene_id "Ledus.S2G089200"
Ledus.S2	AUGUSTUS	start_codon	6744365	6744367	.	+	0	transcript_id "Ledus.S2G089200.t1"; gene_id "Ledus.S2G089200"
Ledus.S2	AUGUSTUS	CDS	6744365	6747145	0.58	+	0	transcript_id "Ledus.S2G089200.t1"; gene_id "Ledus.S2G089200"
Ledus.S2	AUGUSTUS	exon	6744365	6747145	.	+	.	transcript_id "Ledus.S2G089200.t1"; gene_id "Ledus.S2G089200"
Ledus.S2	AUGUSTUS	stop_codon	6747146	6747148	.	+	0	transcript_id "Ledus.S2G089200.t1"; gene_id "Ledus.S2G089200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1988.t1 is derived from g8851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14071935	14074897	.	-	.	Ledus.S2G187000
Ledus.S2	AUGUSTUS	transcript	14071935	14074897	.	-	.	transcript_id "Ledus.S2G187000.t1"; gene_id "Ledus.S2G187000"
Ledus.S2	AUGUSTUS	stop_codon	14071932	14071934	.	-	0	transcript_id "Ledus.S2G187000.t1"; gene_id "Ledus.S2G187000"
Ledus.S2	AUGUSTUS	CDS	14071935	14074652	0.99	-	0	transcript_id "Ledus.S2G187000.t1"; gene_id "Ledus.S2G187000"
Ledus.S2	AUGUSTUS	exon	14071935	14074652	.	-	.	transcript_id "Ledus.S2G187000.t1"; gene_id "Ledus.S2G187000"
Ledus.S2	AUGUSTUS	intron	14074653	14074744	.	-	.	transcript_id "Ledus.S2G187000.t1"; gene_id "Ledus.S2G187000"
Ledus.S2	AUGUSTUS	CDS	14074745	14074897	0.99	-	0	transcript_id "Ledus.S2G187000.t1"; gene_id "Ledus.S2G187000"
Ledus.S2	AUGUSTUS	exon	14074745	14074897	.	-	.	transcript_id "Ledus.S2G187000.t1"; gene_id "Ledus.S2G187000"
Ledus.S2	AUGUSTUS	start_codon	14074895	14074897	.	-	0	transcript_id "Ledus.S2G187000.t1"; gene_id "Ledus.S2G187000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2302.t1 is derived from g9165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17098426	17099178	.	+	.	Ledus.S2G218400
Ledus.S2	AUGUSTUS	transcript	17098426	17099178	.	+	.	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	start_codon	17098426	17098428	.	+	0	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	CDS	17098426	17098621	0.77	+	0	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	exon	17098426	17098621	.	+	.	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	intron	17098622	17098717	.	+	.	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	CDS	17098718	17098827	1	+	2	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	exon	17098718	17098827	.	+	.	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	intron	17098828	17098921	.	+	.	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	CDS	17098922	17098991	1	+	0	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	exon	17098922	17098991	.	+	.	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	intron	17098992	17099080	.	+	.	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	CDS	17099081	17099178	0.61	+	2	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	exon	17099081	17099178	.	+	.	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
Ledus.S2	AUGUSTUS	stop_codon	17099179	17099181	.	+	0	transcript_id "Ledus.S2G218400.t1"; gene_id "Ledus.S2G218400"
# This transcript jg6665.t2 is derived from g4108.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6666.t1 is derived from g4109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32962695	32963943	.	-	.	Ledus.S1G408700
Ledus.S1	AUGUSTUS	transcript	32962695	32963943	.	-	.	transcript_id "Ledus.S1G408700.t1"; gene_id "Ledus.S1G408700"
Ledus.S1	AUGUSTUS	stop_codon	32962692	32962694	.	-	0	transcript_id "Ledus.S1G408700.t1"; gene_id "Ledus.S1G408700"
Ledus.S1	AUGUSTUS	CDS	32962695	32963558	0.65	-	0	transcript_id "Ledus.S1G408700.t1"; gene_id "Ledus.S1G408700"
Ledus.S1	AUGUSTUS	exon	32962695	32963558	.	-	.	transcript_id "Ledus.S1G408700.t1"; gene_id "Ledus.S1G408700"
Ledus.S1	AUGUSTUS	intron	32963559	32963694	.	-	.	transcript_id "Ledus.S1G408700.t1"; gene_id "Ledus.S1G408700"
Ledus.S1	AUGUSTUS	CDS	32963695	32963813	0.92	-	2	transcript_id "Ledus.S1G408700.t1"; gene_id "Ledus.S1G408700"
Ledus.S1	AUGUSTUS	exon	32963695	32963813	.	-	.	transcript_id "Ledus.S1G408700.t1"; gene_id "Ledus.S1G408700"
Ledus.S1	AUGUSTUS	intron	32963814	32963924	.	-	.	transcript_id "Ledus.S1G408700.t1"; gene_id "Ledus.S1G408700"
Ledus.S1	AUGUSTUS	CDS	32963925	32963943	0.41	-	0	transcript_id "Ledus.S1G408700.t1"; gene_id "Ledus.S1G408700"
Ledus.S1	AUGUSTUS	exon	32963925	32963943	.	-	.	transcript_id "Ledus.S1G408700.t1"; gene_id "Ledus.S1G408700"
Ledus.S1	AUGUSTUS	start_codon	32963941	32963943	.	-	0	transcript_id "Ledus.S1G408700.t1"; gene_id "Ledus.S1G408700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8074.t1 is derived from g12745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9047642	9049339	.	-	.	Ledus.S5G085200
Ledus.S5	AUGUSTUS	transcript	9047642	9049339	.	-	.	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	stop_codon	9047639	9047641	.	-	0	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	CDS	9047642	9047734	0.68	-	0	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	exon	9047642	9047734	.	-	.	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	intron	9047735	9047838	.	-	.	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	CDS	9047839	9048072	0.63	-	0	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	exon	9047839	9048072	.	-	.	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	intron	9048073	9048188	.	-	.	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	CDS	9048189	9048326	1	-	0	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	exon	9048189	9048326	.	-	.	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	intron	9048327	9048411	.	-	.	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	CDS	9048412	9048628	1	-	1	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	exon	9048412	9048628	.	-	.	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	intron	9048629	9048716	.	-	.	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	CDS	9048717	9049339	0.88	-	0	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	exon	9048717	9049339	.	-	.	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
Ledus.S5	AUGUSTUS	start_codon	9049337	9049339	.	-	0	transcript_id "Ledus.S5G085200.t1"; gene_id "Ledus.S5G085200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4688.t1 is derived from g2126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19028423	19038689	.	-	.	Ledus.S1G210900
Ledus.S1	AUGUSTUS	transcript	19028423	19038689	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	stop_codon	19028420	19028422	.	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19028423	19028480	0.5	-	1	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19028423	19028480	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19028481	19028557	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19028558	19028711	0.48	-	2	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19028558	19028711	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19028712	19028922	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19028923	19029100	0.53	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19028923	19029100	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19029101	19029176	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19029177	19029236	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19029177	19029236	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19029237	19029318	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19029319	19029416	1	-	2	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19029319	19029416	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19029417	19029514	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19029515	19029676	1	-	2	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19029515	19029676	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19029677	19029769	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19029770	19029905	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19029770	19029905	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19029906	19029995	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19029996	19030166	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19029996	19030166	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19030167	19030305	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19030306	19030416	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19030306	19030416	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19030417	19030524	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19030525	19030678	1	-	1	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19030525	19030678	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19030679	19030767	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19030768	19031109	1	-	1	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19030768	19031109	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19031110	19031200	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19031201	19031385	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19031201	19031385	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19031386	19031551	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19031552	19031650	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19031552	19031650	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19031651	19031849	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19031850	19032113	0.99	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19031850	19032113	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19032114	19032207	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19032208	19032384	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19032208	19032384	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19032385	19032561	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19032562	19032855	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19032562	19032855	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19032856	19032945	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19032946	19033113	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19032946	19033113	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19033114	19033283	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19033284	19033625	0.98	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19033284	19033625	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19033626	19033828	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19033829	19034281	0.99	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19033829	19034281	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19034282	19034382	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19034383	19034455	1	-	1	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19034383	19034455	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19034456	19034539	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19034540	19034724	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19034540	19034724	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19034725	19034841	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19034842	19035241	0.99	-	1	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19034842	19035241	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19035242	19035370	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19035371	19035489	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19035371	19035489	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19035490	19035725	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19035726	19035785	0.86	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19035726	19035785	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19035786	19035897	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19035898	19036006	0.81	-	1	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19035898	19036006	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19036007	19036108	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19036109	19036187	0.99	-	2	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19036109	19036187	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19036188	19036313	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19036314	19036401	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19036314	19036401	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19036402	19036540	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19036541	19036605	1	-	2	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19036541	19036605	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19036606	19036695	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19036696	19036848	1	-	2	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19036696	19036848	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19036849	19037032	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19037033	19037139	1	-	1	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19037033	19037139	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19037140	19037277	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19037278	19037360	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19037278	19037360	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19037361	19037478	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19037479	19037572	0.97	-	1	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19037479	19037572	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19037573	19037660	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19037661	19037797	1	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19037661	19037797	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19037798	19037976	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19037977	19038066	0.98	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19037977	19038066	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19038067	19038181	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19038182	19038349	0.99	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19038182	19038349	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	intron	19038350	19038518	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	CDS	19038519	19038689	0.94	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	exon	19038519	19038689	.	-	.	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
Ledus.S1	AUGUSTUS	start_codon	19038687	19038689	.	-	0	transcript_id "Ledus.S1G210900.t1"; gene_id "Ledus.S1G210900"
# This transcript jg6160.t2 is derived from g3603.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6161.t1 is derived from g3604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29333696	29334206	.	+	.	Ledus.S1G358200
Ledus.S1	AUGUSTUS	transcript	29333696	29334206	.	+	.	transcript_id "Ledus.S1G358200.t1"; gene_id "Ledus.S1G358200"
Ledus.S1	AUGUSTUS	start_codon	29333696	29333698	.	+	0	transcript_id "Ledus.S1G358200.t1"; gene_id "Ledus.S1G358200"
Ledus.S1	AUGUSTUS	CDS	29333696	29333815	0.99	+	0	transcript_id "Ledus.S1G358200.t1"; gene_id "Ledus.S1G358200"
Ledus.S1	AUGUSTUS	exon	29333696	29333815	.	+	.	transcript_id "Ledus.S1G358200.t1"; gene_id "Ledus.S1G358200"
Ledus.S1	AUGUSTUS	intron	29333816	29333900	.	+	.	transcript_id "Ledus.S1G358200.t1"; gene_id "Ledus.S1G358200"
Ledus.S1	AUGUSTUS	CDS	29333901	29334206	1	+	0	transcript_id "Ledus.S1G358200.t1"; gene_id "Ledus.S1G358200"
Ledus.S1	AUGUSTUS	exon	29333901	29334206	.	+	.	transcript_id "Ledus.S1G358200.t1"; gene_id "Ledus.S1G358200"
Ledus.S1	AUGUSTUS	stop_codon	29334207	29334209	.	+	0	transcript_id "Ledus.S1G358200.t1"; gene_id "Ledus.S1G358200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9952.t1 is derived from g10982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11439878	11440501	.	-	.	Ledus.S3G142900
Ledus.S3	AUGUSTUS	transcript	11439878	11440501	.	-	.	transcript_id "Ledus.S3G142900.t1"; gene_id "Ledus.S3G142900"
Ledus.S3	AUGUSTUS	stop_codon	11439875	11439877	.	-	0	transcript_id "Ledus.S3G142900.t1"; gene_id "Ledus.S3G142900"
Ledus.S3	AUGUSTUS	CDS	11439878	11440501	0.81	-	0	transcript_id "Ledus.S3G142900.t1"; gene_id "Ledus.S3G142900"
Ledus.S3	AUGUSTUS	exon	11439878	11440501	.	-	.	transcript_id "Ledus.S3G142900.t1"; gene_id "Ledus.S3G142900"
Ledus.S3	AUGUSTUS	start_codon	11440499	11440501	.	-	0	transcript_id "Ledus.S3G142900.t1"; gene_id "Ledus.S3G142900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5519.t1 is derived from g2958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24784555	24785466	.	+	.	Ledus.S1G294000
Ledus.S1	AUGUSTUS	transcript	24784555	24785466	.	+	.	transcript_id "Ledus.S1G294000.t1"; gene_id "Ledus.S1G294000"
Ledus.S1	AUGUSTUS	start_codon	24784555	24784557	.	+	0	transcript_id "Ledus.S1G294000.t1"; gene_id "Ledus.S1G294000"
Ledus.S1	AUGUSTUS	CDS	24784555	24784700	1	+	0	transcript_id "Ledus.S1G294000.t1"; gene_id "Ledus.S1G294000"
Ledus.S1	AUGUSTUS	exon	24784555	24784700	.	+	.	transcript_id "Ledus.S1G294000.t1"; gene_id "Ledus.S1G294000"
Ledus.S1	AUGUSTUS	intron	24784701	24784817	.	+	.	transcript_id "Ledus.S1G294000.t1"; gene_id "Ledus.S1G294000"
Ledus.S1	AUGUSTUS	CDS	24784818	24785466	0.99	+	1	transcript_id "Ledus.S1G294000.t1"; gene_id "Ledus.S1G294000"
Ledus.S1	AUGUSTUS	exon	24784818	24785466	.	+	.	transcript_id "Ledus.S1G294000.t1"; gene_id "Ledus.S1G294000"
Ledus.S1	AUGUSTUS	stop_codon	24785467	24785469	.	+	0	transcript_id "Ledus.S1G294000.t1"; gene_id "Ledus.S1G294000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11605.t1 is derived from g5223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5488351	5488605	.	+	.	Ledus.S4G076100
Ledus.S4	AUGUSTUS	transcript	5488351	5488605	.	+	.	transcript_id "Ledus.S4G076100.t1"; gene_id "Ledus.S4G076100"
Ledus.S4	AUGUSTUS	start_codon	5488351	5488353	.	+	0	transcript_id "Ledus.S4G076100.t1"; gene_id "Ledus.S4G076100"
Ledus.S4	AUGUSTUS	CDS	5488351	5488605	0.99	+	0	transcript_id "Ledus.S4G076100.t1"; gene_id "Ledus.S4G076100"
Ledus.S4	AUGUSTUS	exon	5488351	5488605	.	+	.	transcript_id "Ledus.S4G076100.t1"; gene_id "Ledus.S4G076100"
Ledus.S4	AUGUSTUS	stop_codon	5488606	5488608	.	+	0	transcript_id "Ledus.S4G076100.t1"; gene_id "Ledus.S4G076100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7188.t1 is derived from g6719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2042377	2043372	.	+	.	Ledus.C7G024900
Ledus.C7	AUGUSTUS	transcript	2042377	2043372	.	+	.	transcript_id "Ledus.C7G024900.t1"; gene_id "Ledus.C7G024900"
Ledus.C7	AUGUSTUS	start_codon	2042377	2042379	.	+	0	transcript_id "Ledus.C7G024900.t1"; gene_id "Ledus.C7G024900"
Ledus.C7	AUGUSTUS	CDS	2042377	2043372	0.6	+	0	transcript_id "Ledus.C7G024900.t1"; gene_id "Ledus.C7G024900"
Ledus.C7	AUGUSTUS	exon	2042377	2043372	.	+	.	transcript_id "Ledus.C7G024900.t1"; gene_id "Ledus.C7G024900"
Ledus.C7	AUGUSTUS	stop_codon	2043373	2043375	.	+	0	transcript_id "Ledus.C7G024900.t1"; gene_id "Ledus.C7G024900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10638.t1 is derived from g11668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16790162	16791187	.	+	.	Ledus.S3G211500
Ledus.S3	AUGUSTUS	transcript	16790162	16791187	.	+	.	transcript_id "Ledus.S3G211500.t1"; gene_id "Ledus.S3G211500"
Ledus.S3	AUGUSTUS	start_codon	16790162	16790164	.	+	0	transcript_id "Ledus.S3G211500.t1"; gene_id "Ledus.S3G211500"
Ledus.S3	AUGUSTUS	CDS	16790162	16790584	0.82	+	0	transcript_id "Ledus.S3G211500.t1"; gene_id "Ledus.S3G211500"
Ledus.S3	AUGUSTUS	exon	16790162	16790584	.	+	.	transcript_id "Ledus.S3G211500.t1"; gene_id "Ledus.S3G211500"
Ledus.S3	AUGUSTUS	intron	16790585	16790662	.	+	.	transcript_id "Ledus.S3G211500.t1"; gene_id "Ledus.S3G211500"
Ledus.S3	AUGUSTUS	CDS	16790663	16791187	1	+	0	transcript_id "Ledus.S3G211500.t1"; gene_id "Ledus.S3G211500"
Ledus.S3	AUGUSTUS	exon	16790663	16791187	.	+	.	transcript_id "Ledus.S3G211500.t1"; gene_id "Ledus.S3G211500"
Ledus.S3	AUGUSTUS	stop_codon	16791188	16791190	.	+	0	transcript_id "Ledus.S3G211500.t1"; gene_id "Ledus.S3G211500"
# This transcript jg4008.t2 is derived from g1444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4009.t1 is derived from g1445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14052130	14052894	.	-	.	Ledus.S1G143000
Ledus.S1	AUGUSTUS	transcript	14052130	14052894	.	-	.	transcript_id "Ledus.S1G143000.t1"; gene_id "Ledus.S1G143000"
Ledus.S1	AUGUSTUS	stop_codon	14052127	14052129	.	-	0	transcript_id "Ledus.S1G143000.t1"; gene_id "Ledus.S1G143000"
Ledus.S1	AUGUSTUS	CDS	14052130	14052201	1	-	0	transcript_id "Ledus.S1G143000.t1"; gene_id "Ledus.S1G143000"
Ledus.S1	AUGUSTUS	exon	14052130	14052201	.	-	.	transcript_id "Ledus.S1G143000.t1"; gene_id "Ledus.S1G143000"
Ledus.S1	AUGUSTUS	intron	14052202	14052291	.	-	.	transcript_id "Ledus.S1G143000.t1"; gene_id "Ledus.S1G143000"
Ledus.S1	AUGUSTUS	CDS	14052292	14052352	0.75	-	1	transcript_id "Ledus.S1G143000.t1"; gene_id "Ledus.S1G143000"
Ledus.S1	AUGUSTUS	exon	14052292	14052352	.	-	.	transcript_id "Ledus.S1G143000.t1"; gene_id "Ledus.S1G143000"
Ledus.S1	AUGUSTUS	intron	14052353	14052625	.	-	.	transcript_id "Ledus.S1G143000.t1"; gene_id "Ledus.S1G143000"
Ledus.S1	AUGUSTUS	CDS	14052626	14052894	0.73	-	0	transcript_id "Ledus.S1G143000.t1"; gene_id "Ledus.S1G143000"
Ledus.S1	AUGUSTUS	exon	14052626	14052894	.	-	.	transcript_id "Ledus.S1G143000.t1"; gene_id "Ledus.S1G143000"
Ledus.S1	AUGUSTUS	start_codon	14052892	14052894	.	-	0	transcript_id "Ledus.S1G143000.t1"; gene_id "Ledus.S1G143000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3202.t1 is derived from g637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6802662	6804422	.	+	.	Ledus.S1G062300
Ledus.S1	AUGUSTUS	transcript	6802662	6804422	.	+	.	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	start_codon	6802662	6802664	.	+	0	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	CDS	6802662	6802933	0.92	+	0	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	exon	6802662	6802933	.	+	.	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	intron	6802934	6803017	.	+	.	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	CDS	6803018	6803288	0.99	+	1	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	exon	6803018	6803288	.	+	.	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	intron	6803289	6803376	.	+	.	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	CDS	6803377	6803663	0.69	+	0	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	exon	6803377	6803663	.	+	.	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	intron	6803664	6803734	.	+	.	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	CDS	6803735	6804010	0.61	+	1	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	exon	6803735	6804010	.	+	.	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	intron	6804011	6804112	.	+	.	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	CDS	6804113	6804422	0.93	+	1	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	exon	6804113	6804422	.	+	.	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
Ledus.S1	AUGUSTUS	stop_codon	6804423	6804425	.	+	0	transcript_id "Ledus.S1G062300.t1"; gene_id "Ledus.S1G062300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11639.t1 is derived from g5258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5705356	5706050	.	-	.	Ledus.S4G079500
Ledus.S4	AUGUSTUS	transcript	5705356	5706050	.	-	.	transcript_id "Ledus.S4G079500.t1"; gene_id "Ledus.S4G079500"
Ledus.S4	AUGUSTUS	stop_codon	5705353	5705355	.	-	0	transcript_id "Ledus.S4G079500.t1"; gene_id "Ledus.S4G079500"
Ledus.S4	AUGUSTUS	CDS	5705356	5705898	0.99	-	0	transcript_id "Ledus.S4G079500.t1"; gene_id "Ledus.S4G079500"
Ledus.S4	AUGUSTUS	exon	5705356	5705898	.	-	.	transcript_id "Ledus.S4G079500.t1"; gene_id "Ledus.S4G079500"
Ledus.S4	AUGUSTUS	intron	5705899	5705996	.	-	.	transcript_id "Ledus.S4G079500.t1"; gene_id "Ledus.S4G079500"
Ledus.S4	AUGUSTUS	CDS	5705997	5706050	0.84	-	0	transcript_id "Ledus.S4G079500.t1"; gene_id "Ledus.S4G079500"
Ledus.S4	AUGUSTUS	exon	5705997	5706050	.	-	.	transcript_id "Ledus.S4G079500.t1"; gene_id "Ledus.S4G079500"
Ledus.S4	AUGUSTUS	start_codon	5706048	5706050	.	-	0	transcript_id "Ledus.S4G079500.t1"; gene_id "Ledus.S4G079500"
# This transcript jg9920.t2 is derived from g10950.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9920.t3 is derived from g10950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9921.t1 is derived from g10951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11229138	11229935	.	-	.	Ledus.S3G139800
Ledus.S3	AUGUSTUS	transcript	11229138	11229935	.	-	.	transcript_id "Ledus.S3G139800.t1"; gene_id "Ledus.S3G139800"
Ledus.S3	AUGUSTUS	stop_codon	11229135	11229137	.	-	0	transcript_id "Ledus.S3G139800.t1"; gene_id "Ledus.S3G139800"
Ledus.S3	AUGUSTUS	CDS	11229138	11229378	0.95	-	1	transcript_id "Ledus.S3G139800.t1"; gene_id "Ledus.S3G139800"
Ledus.S3	AUGUSTUS	exon	11229138	11229378	.	-	.	transcript_id "Ledus.S3G139800.t1"; gene_id "Ledus.S3G139800"
Ledus.S3	AUGUSTUS	intron	11229379	11229460	.	-	.	transcript_id "Ledus.S3G139800.t1"; gene_id "Ledus.S3G139800"
Ledus.S3	AUGUSTUS	CDS	11229461	11229615	1	-	0	transcript_id "Ledus.S3G139800.t1"; gene_id "Ledus.S3G139800"
Ledus.S3	AUGUSTUS	exon	11229461	11229615	.	-	.	transcript_id "Ledus.S3G139800.t1"; gene_id "Ledus.S3G139800"
Ledus.S3	AUGUSTUS	intron	11229616	11229704	.	-	.	transcript_id "Ledus.S3G139800.t1"; gene_id "Ledus.S3G139800"
Ledus.S3	AUGUSTUS	CDS	11229705	11229935	0.53	-	0	transcript_id "Ledus.S3G139800.t1"; gene_id "Ledus.S3G139800"
Ledus.S3	AUGUSTUS	exon	11229705	11229935	.	-	.	transcript_id "Ledus.S3G139800.t1"; gene_id "Ledus.S3G139800"
Ledus.S3	AUGUSTUS	start_codon	11229933	11229935	.	-	0	transcript_id "Ledus.S3G139800.t1"; gene_id "Ledus.S3G139800"
# This transcript jg5742.t2 is derived from g3181.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5743.t1 is derived from g3182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26435379	26435834	.	+	.	Ledus.S1G316400
Ledus.S1	AUGUSTUS	transcript	26435379	26435834	.	+	.	transcript_id "Ledus.S1G316400.t1"; gene_id "Ledus.S1G316400"
Ledus.S1	AUGUSTUS	start_codon	26435379	26435381	.	+	0	transcript_id "Ledus.S1G316400.t1"; gene_id "Ledus.S1G316400"
Ledus.S1	AUGUSTUS	CDS	26435379	26435834	0.73	+	0	transcript_id "Ledus.S1G316400.t1"; gene_id "Ledus.S1G316400"
Ledus.S1	AUGUSTUS	exon	26435379	26435834	.	+	.	transcript_id "Ledus.S1G316400.t1"; gene_id "Ledus.S1G316400"
Ledus.S1	AUGUSTUS	stop_codon	26435835	26435837	.	+	0	transcript_id "Ledus.S1G316400.t1"; gene_id "Ledus.S1G316400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6931.t1 is derived from g4375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35591547	35592029	.	-	.	Ledus.S1G435200
Ledus.S1	AUGUSTUS	transcript	35591547	35592029	.	-	.	transcript_id "Ledus.S1G435200.t1"; gene_id "Ledus.S1G435200"
Ledus.S1	AUGUSTUS	stop_codon	35591544	35591546	.	-	0	transcript_id "Ledus.S1G435200.t1"; gene_id "Ledus.S1G435200"
Ledus.S1	AUGUSTUS	CDS	35591547	35592029	0.61	-	0	transcript_id "Ledus.S1G435200.t1"; gene_id "Ledus.S1G435200"
Ledus.S1	AUGUSTUS	exon	35591547	35592029	.	-	.	transcript_id "Ledus.S1G435200.t1"; gene_id "Ledus.S1G435200"
Ledus.S1	AUGUSTUS	start_codon	35592027	35592029	.	-	0	transcript_id "Ledus.S1G435200.t1"; gene_id "Ledus.S1G435200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11911.t1 is derived from g5530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7716377	7718734	.	+	.	Ledus.S4G106700
Ledus.S4	AUGUSTUS	transcript	7716377	7718734	.	+	.	transcript_id "Ledus.S4G106700.t1"; gene_id "Ledus.S4G106700"
Ledus.S4	AUGUSTUS	start_codon	7716377	7716379	.	+	0	transcript_id "Ledus.S4G106700.t1"; gene_id "Ledus.S4G106700"
Ledus.S4	AUGUSTUS	CDS	7716377	7716527	0.77	+	0	transcript_id "Ledus.S4G106700.t1"; gene_id "Ledus.S4G106700"
Ledus.S4	AUGUSTUS	exon	7716377	7716527	.	+	.	transcript_id "Ledus.S4G106700.t1"; gene_id "Ledus.S4G106700"
Ledus.S4	AUGUSTUS	intron	7716528	7716608	.	+	.	transcript_id "Ledus.S4G106700.t1"; gene_id "Ledus.S4G106700"
Ledus.S4	AUGUSTUS	CDS	7716609	7718734	0.99	+	2	transcript_id "Ledus.S4G106700.t1"; gene_id "Ledus.S4G106700"
Ledus.S4	AUGUSTUS	exon	7716609	7718734	.	+	.	transcript_id "Ledus.S4G106700.t1"; gene_id "Ledus.S4G106700"
Ledus.S4	AUGUSTUS	stop_codon	7718735	7718737	.	+	0	transcript_id "Ledus.S4G106700.t1"; gene_id "Ledus.S4G106700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3349.t1 is derived from g784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7744399	7745565	.	+	.	Ledus.S1G077000
Ledus.S1	AUGUSTUS	transcript	7744399	7745565	.	+	.	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	start_codon	7744399	7744401	.	+	0	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	CDS	7744399	7744425	1	+	0	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	exon	7744399	7744425	.	+	.	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	intron	7744426	7744579	.	+	.	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	CDS	7744580	7744626	1	+	0	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	exon	7744580	7744626	.	+	.	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	intron	7744627	7744754	.	+	.	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	CDS	7744755	7744919	0.99	+	1	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	exon	7744755	7744919	.	+	.	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	intron	7744920	7745037	.	+	.	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	CDS	7745038	7745086	0.96	+	1	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	exon	7745038	7745086	.	+	.	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	intron	7745087	7745170	.	+	.	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	CDS	7745171	7745261	0.96	+	0	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	exon	7745171	7745261	.	+	.	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	intron	7745262	7745332	.	+	.	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	CDS	7745333	7745565	0.88	+	2	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	exon	7745333	7745565	.	+	.	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
Ledus.S1	AUGUSTUS	stop_codon	7745566	7745568	.	+	0	transcript_id "Ledus.S1G077000.t1"; gene_id "Ledus.S1G077000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1302.t1 is derived from g8163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9186230	9189843	.	+	.	Ledus.S2G118400
Ledus.S2	AUGUSTUS	transcript	9186230	9189843	.	+	.	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	start_codon	9186230	9186232	.	+	0	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	CDS	9186230	9186274	0.85	+	0	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	exon	9186230	9186274	.	+	.	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	intron	9186275	9186367	.	+	.	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	CDS	9186368	9186803	1	+	0	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	exon	9186368	9186803	.	+	.	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	intron	9186804	9186927	.	+	.	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	CDS	9186928	9187401	1	+	2	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	exon	9186928	9187401	.	+	.	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	intron	9187402	9187482	.	+	.	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	CDS	9187483	9189585	0.95	+	2	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	exon	9187483	9189585	.	+	.	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	intron	9189586	9189835	.	+	.	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	CDS	9189836	9189843	0.99	+	2	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	exon	9189836	9189843	.	+	.	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
Ledus.S2	AUGUSTUS	stop_codon	9189844	9189846	.	+	0	transcript_id "Ledus.S2G118400.t1"; gene_id "Ledus.S2G118400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12063.t1 is derived from g5682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9276187	9278646	.	+	.	Ledus.S4G121900
Ledus.S4	AUGUSTUS	transcript	9276187	9278646	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	start_codon	9276187	9276189	.	+	0	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	CDS	9276187	9276655	0.73	+	0	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	exon	9276187	9276655	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	intron	9276656	9276775	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	CDS	9276776	9276826	0.95	+	2	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	exon	9276776	9276826	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	intron	9276827	9276910	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	CDS	9276911	9276990	1	+	2	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	exon	9276911	9276990	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	intron	9276991	9277256	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	CDS	9277257	9277482	1	+	0	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	exon	9277257	9277482	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	intron	9277483	9277574	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	CDS	9277575	9277681	1	+	2	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	exon	9277575	9277681	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	intron	9277682	9277807	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	CDS	9277808	9277909	1	+	0	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	exon	9277808	9277909	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	intron	9277910	9277998	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	CDS	9277999	9278105	1	+	0	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	exon	9277999	9278105	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	intron	9278106	9278183	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	CDS	9278184	9278646	0.98	+	1	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	exon	9278184	9278646	.	+	.	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
Ledus.S4	AUGUSTUS	stop_codon	9278647	9278649	.	+	0	transcript_id "Ledus.S4G121900.t1"; gene_id "Ledus.S4G121900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10487.t1 is derived from g11517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15569002	15571021	.	-	.	Ledus.S3G196400
Ledus.S3	AUGUSTUS	transcript	15569002	15571021	.	-	.	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	stop_codon	15568999	15569001	.	-	0	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	CDS	15569002	15569155	0.99	-	1	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	exon	15569002	15569155	.	-	.	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	intron	15569156	15569254	.	-	.	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	CDS	15569255	15569308	1	-	1	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	exon	15569255	15569308	.	-	.	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	intron	15569309	15569446	.	-	.	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	CDS	15569447	15570603	0.89	-	0	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	exon	15569447	15570603	.	-	.	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	intron	15570604	15570931	.	-	.	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	CDS	15570932	15571021	0.47	-	0	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	exon	15570932	15571021	.	-	.	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
Ledus.S3	AUGUSTUS	start_codon	15571019	15571021	.	-	0	transcript_id "Ledus.S3G196400.t1"; gene_id "Ledus.S3G196400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11552.t1 is derived from g5170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5245229	5249950	.	+	.	Ledus.S4G070800
Ledus.S4	AUGUSTUS	transcript	5245229	5249950	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	start_codon	5245229	5245231	.	+	0	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	CDS	5245229	5245352	0.9	+	0	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	exon	5245229	5245352	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	intron	5245353	5245516	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	CDS	5245517	5245552	1	+	2	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	exon	5245517	5245552	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	intron	5245553	5245778	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	CDS	5245779	5246712	0.99	+	2	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	exon	5245779	5246712	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	intron	5246713	5246862	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	CDS	5246863	5248642	0.97	+	1	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	exon	5246863	5248642	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	intron	5248643	5248755	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	CDS	5248756	5248979	1	+	0	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	exon	5248756	5248979	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	intron	5248980	5249101	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	CDS	5249102	5249309	1	+	1	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	exon	5249102	5249309	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	intron	5249310	5249551	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	CDS	5249552	5249950	0.99	+	0	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	exon	5249552	5249950	.	+	.	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
Ledus.S4	AUGUSTUS	stop_codon	5249951	5249953	.	+	0	transcript_id "Ledus.S4G070800.t1"; gene_id "Ledus.S4G070800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6668.t1 is derived from g4111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32968040	32973160	.	+	.	Ledus.S1G408900
Ledus.S1	AUGUSTUS	transcript	32968040	32973160	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	start_codon	32968040	32968042	.	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32968040	32968112	0.83	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32968040	32968112	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32968113	32968188	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32968189	32968922	0.98	+	2	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32968189	32968922	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32968923	32969055	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32969056	32969115	0.91	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32969056	32969115	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32969116	32969192	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32969193	32969324	0.57	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32969193	32969324	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32969325	32969435	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32969436	32969483	0.95	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32969436	32969483	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32969484	32969571	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32969572	32969658	1	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32969572	32969658	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32969659	32969814	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32969815	32969913	1	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32969815	32969913	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32969914	32970026	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32970027	32970080	0.88	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32970027	32970080	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32970081	32970189	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32970190	32970240	0.53	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32970190	32970240	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32970241	32970419	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32970420	32970491	1	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32970420	32970491	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32970492	32970633	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32970634	32970738	1	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32970634	32970738	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32970739	32970875	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32970876	32970941	1	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32970876	32970941	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32970942	32971047	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32971048	32971194	1	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32971048	32971194	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32971195	32971444	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32971445	32971480	0.8	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32971445	32971480	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32971481	32971589	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32971590	32971646	0.97	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32971590	32971646	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32971647	32971728	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32971729	32971836	1	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32971729	32971836	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32971837	32971922	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32971923	32972038	1	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32971923	32972038	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32972039	32972127	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32972128	32972203	0.99	+	1	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32972128	32972203	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32972204	32972317	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32972318	32973160	0.99	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32972318	32973160	.	+	.	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	stop_codon	32973161	32973163	.	+	0	transcript_id "Ledus.S1G408900.t1"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	transcript	32968040	32973160	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	start_codon	32968040	32968042	.	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32968040	32968112	0.86	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32968040	32968112	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32968113	32968188	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32968189	32968922	1	+	2	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32968189	32968922	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32968923	32969055	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32969056	32969115	0.94	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32969056	32969115	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32969116	32969192	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32969193	32969324	0.68	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32969193	32969324	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32969325	32969435	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32969436	32969483	0.92	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32969436	32969483	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32969484	32969571	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32969572	32969658	1	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32969572	32969658	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32969659	32969814	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32969815	32969913	1	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32969815	32969913	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32969914	32970026	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32970027	32970080	0.92	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32970027	32970080	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32970081	32970189	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32970190	32970240	0.57	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32970190	32970240	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32970241	32970419	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32970420	32970491	1	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32970420	32970491	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32970492	32970633	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32970634	32970776	0.82	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32970634	32970776	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32970777	32970875	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32970876	32970941	0.82	+	1	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32970876	32970941	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32970942	32971016	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32971017	32971194	0.43	+	1	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32971017	32971194	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32971195	32971444	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32971445	32971480	0.71	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32971445	32971480	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32971481	32971589	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32971590	32971646	0.99	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32971590	32971646	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32971647	32971728	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32971729	32971836	1	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32971729	32971836	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32971837	32971922	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32971923	32972038	1	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32971923	32972038	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32972039	32972127	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32972128	32972203	1	+	1	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32972128	32972203	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	intron	32972204	32972317	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	CDS	32972318	32973160	0.95	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	exon	32972318	32973160	.	+	.	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
Ledus.S1	AUGUSTUS	stop_codon	32973161	32973163	.	+	0	transcript_id "Ledus.S1G408900.t2"; gene_id "Ledus.S1G408900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4001.t1 is derived from g1437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14012769	14013077	.	-	.	Ledus.S1G142200
Ledus.S1	AUGUSTUS	transcript	14012769	14013077	.	-	.	transcript_id "Ledus.S1G142200.t1"; gene_id "Ledus.S1G142200"
Ledus.S1	AUGUSTUS	stop_codon	14012766	14012768	.	-	0	transcript_id "Ledus.S1G142200.t1"; gene_id "Ledus.S1G142200"
Ledus.S1	AUGUSTUS	CDS	14012769	14013077	0.76	-	0	transcript_id "Ledus.S1G142200.t1"; gene_id "Ledus.S1G142200"
Ledus.S1	AUGUSTUS	exon	14012769	14013077	.	-	.	transcript_id "Ledus.S1G142200.t1"; gene_id "Ledus.S1G142200"
Ledus.S1	AUGUSTUS	start_codon	14013075	14013077	.	-	0	transcript_id "Ledus.S1G142200.t1"; gene_id "Ledus.S1G142200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1474.t1 is derived from g8335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10384732	10385265	.	+	.	Ledus.S2G135600
Ledus.S2	AUGUSTUS	transcript	10384732	10385265	.	+	.	transcript_id "Ledus.S2G135600.t1"; gene_id "Ledus.S2G135600"
Ledus.S2	AUGUSTUS	start_codon	10384732	10384734	.	+	0	transcript_id "Ledus.S2G135600.t1"; gene_id "Ledus.S2G135600"
Ledus.S2	AUGUSTUS	CDS	10384732	10385265	0.84	+	0	transcript_id "Ledus.S2G135600.t1"; gene_id "Ledus.S2G135600"
Ledus.S2	AUGUSTUS	exon	10384732	10385265	.	+	.	transcript_id "Ledus.S2G135600.t1"; gene_id "Ledus.S2G135600"
Ledus.S2	AUGUSTUS	stop_codon	10385266	10385268	.	+	0	transcript_id "Ledus.S2G135600.t1"; gene_id "Ledus.S2G135600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7080.t1 is derived from g6611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1298376	1298666	.	-	.	Ledus.C7G014100
Ledus.C7	AUGUSTUS	transcript	1298376	1298666	.	-	.	transcript_id "Ledus.C7G014100.t1"; gene_id "Ledus.C7G014100"
Ledus.C7	AUGUSTUS	stop_codon	1298373	1298375	.	-	0	transcript_id "Ledus.C7G014100.t1"; gene_id "Ledus.C7G014100"
Ledus.C7	AUGUSTUS	CDS	1298376	1298666	0.69	-	0	transcript_id "Ledus.C7G014100.t1"; gene_id "Ledus.C7G014100"
Ledus.C7	AUGUSTUS	exon	1298376	1298666	.	-	.	transcript_id "Ledus.C7G014100.t1"; gene_id "Ledus.C7G014100"
Ledus.C7	AUGUSTUS	start_codon	1298664	1298666	.	-	0	transcript_id "Ledus.C7G014100.t1"; gene_id "Ledus.C7G014100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2546.t1 is derived from g9409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18862707	18865461	.	-	.	Ledus.S2G242800
Ledus.S2	AUGUSTUS	transcript	18862707	18865461	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	stop_codon	18862704	18862706	.	-	0	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	CDS	18862707	18863021	1	-	0	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	exon	18862707	18863021	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	intron	18863022	18863106	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	CDS	18863107	18863501	1	-	2	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	exon	18863107	18863501	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	intron	18863502	18863582	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	CDS	18863583	18863921	1	-	2	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	exon	18863583	18863921	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	intron	18863922	18864003	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	CDS	18864004	18864150	1	-	2	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	exon	18864004	18864150	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	intron	18864151	18864237	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	CDS	18864238	18864329	1	-	1	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	exon	18864238	18864329	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	intron	18864330	18864416	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	CDS	18864417	18864476	1	-	1	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	exon	18864417	18864476	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	intron	18864477	18864565	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	CDS	18864566	18864637	1	-	1	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	exon	18864566	18864637	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	intron	18864638	18864756	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	CDS	18864757	18864900	1	-	1	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	exon	18864757	18864900	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	intron	18864901	18864972	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	CDS	18864973	18865044	1	-	1	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	exon	18864973	18865044	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	intron	18865045	18865143	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	CDS	18865144	18865276	1	-	2	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	exon	18865144	18865276	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	intron	18865277	18865400	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	CDS	18865401	18865461	0.34	-	0	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	exon	18865401	18865461	.	-	.	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
Ledus.S2	AUGUSTUS	start_codon	18865459	18865461	.	-	0	transcript_id "Ledus.S2G242800.t1"; gene_id "Ledus.S2G242800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8104.t1 is derived from g12775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9145759	9146439	.	+	.	Ledus.S5G088200
Ledus.S5	AUGUSTUS	transcript	9145759	9146439	.	+	.	transcript_id "Ledus.S5G088200.t1"; gene_id "Ledus.S5G088200"
Ledus.S5	AUGUSTUS	start_codon	9145759	9145761	.	+	0	transcript_id "Ledus.S5G088200.t1"; gene_id "Ledus.S5G088200"
Ledus.S5	AUGUSTUS	CDS	9145759	9146439	0.36	+	0	transcript_id "Ledus.S5G088200.t1"; gene_id "Ledus.S5G088200"
Ledus.S5	AUGUSTUS	exon	9145759	9146439	.	+	.	transcript_id "Ledus.S5G088200.t1"; gene_id "Ledus.S5G088200"
Ledus.S5	AUGUSTUS	stop_codon	9146440	9146442	.	+	0	transcript_id "Ledus.S5G088200.t1"; gene_id "Ledus.S5G088200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7846.t1 is derived from g12517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7437204	7439973	.	-	.	Ledus.S5G062400
Ledus.S5	AUGUSTUS	transcript	7437204	7439973	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	stop_codon	7437201	7437203	.	-	0	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	CDS	7437204	7437299	1	-	0	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	exon	7437204	7437299	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	intron	7437300	7437377	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	CDS	7437378	7437602	0.94	-	0	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	exon	7437378	7437602	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	intron	7437603	7437678	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	CDS	7437679	7438035	1	-	0	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	exon	7437679	7438035	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	intron	7438036	7438110	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	CDS	7438111	7438204	0.74	-	1	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	exon	7438111	7438204	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	intron	7438205	7438356	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	CDS	7438357	7438436	0.79	-	0	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	exon	7438357	7438436	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	intron	7438437	7438520	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	CDS	7438521	7438617	0.92	-	1	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	exon	7438521	7438617	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	intron	7438618	7438709	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	CDS	7438710	7438873	0.98	-	0	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	exon	7438710	7438873	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	intron	7438874	7439002	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	CDS	7439003	7439263	0.93	-	0	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	exon	7439003	7439263	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	intron	7439264	7439380	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	CDS	7439381	7439772	1	-	2	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	exon	7439381	7439772	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	intron	7439773	7439861	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	CDS	7439862	7439973	0.91	-	0	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	exon	7439862	7439973	.	-	.	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
Ledus.S5	AUGUSTUS	start_codon	7439971	7439973	.	-	0	transcript_id "Ledus.S5G062400.t1"; gene_id "Ledus.S5G062400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg61.t1 is derived from g9474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	179723	181130	.	-	.	Ledus.C8G002100
Ledus.C8	AUGUSTUS	transcript	179723	181130	.	-	.	transcript_id "Ledus.C8G002100.t1"; gene_id "Ledus.C8G002100"
Ledus.C8	AUGUSTUS	stop_codon	179720	179722	.	-	0	transcript_id "Ledus.C8G002100.t1"; gene_id "Ledus.C8G002100"
Ledus.C8	AUGUSTUS	CDS	179723	180223	0.99	-	0	transcript_id "Ledus.C8G002100.t1"; gene_id "Ledus.C8G002100"
Ledus.C8	AUGUSTUS	exon	179723	180223	.	-	.	transcript_id "Ledus.C8G002100.t1"; gene_id "Ledus.C8G002100"
Ledus.C8	AUGUSTUS	intron	180224	180340	.	-	.	transcript_id "Ledus.C8G002100.t1"; gene_id "Ledus.C8G002100"
Ledus.C8	AUGUSTUS	CDS	180341	180465	0.99	-	2	transcript_id "Ledus.C8G002100.t1"; gene_id "Ledus.C8G002100"
Ledus.C8	AUGUSTUS	exon	180341	180465	.	-	.	transcript_id "Ledus.C8G002100.t1"; gene_id "Ledus.C8G002100"
Ledus.C8	AUGUSTUS	intron	180466	180565	.	-	.	transcript_id "Ledus.C8G002100.t1"; gene_id "Ledus.C8G002100"
Ledus.C8	AUGUSTUS	CDS	180566	181130	0.98	-	0	transcript_id "Ledus.C8G002100.t1"; gene_id "Ledus.C8G002100"
Ledus.C8	AUGUSTUS	exon	180566	181130	.	-	.	transcript_id "Ledus.C8G002100.t1"; gene_id "Ledus.C8G002100"
Ledus.C8	AUGUSTUS	start_codon	181128	181130	.	-	0	transcript_id "Ledus.C8G002100.t1"; gene_id "Ledus.C8G002100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7807.t1 is derived from g12478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6940322	6940801	.	-	.	Ledus.S5G058500
Ledus.S5	AUGUSTUS	transcript	6940322	6940801	.	-	.	transcript_id "Ledus.S5G058500.t1"; gene_id "Ledus.S5G058500"
Ledus.S5	AUGUSTUS	stop_codon	6940319	6940321	.	-	0	transcript_id "Ledus.S5G058500.t1"; gene_id "Ledus.S5G058500"
Ledus.S5	AUGUSTUS	CDS	6940322	6940344	1	-	2	transcript_id "Ledus.S5G058500.t1"; gene_id "Ledus.S5G058500"
Ledus.S5	AUGUSTUS	exon	6940322	6940344	.	-	.	transcript_id "Ledus.S5G058500.t1"; gene_id "Ledus.S5G058500"
Ledus.S5	AUGUSTUS	intron	6940345	6940512	.	-	.	transcript_id "Ledus.S5G058500.t1"; gene_id "Ledus.S5G058500"
Ledus.S5	AUGUSTUS	CDS	6940513	6940801	0.82	-	0	transcript_id "Ledus.S5G058500.t1"; gene_id "Ledus.S5G058500"
Ledus.S5	AUGUSTUS	exon	6940513	6940801	.	-	.	transcript_id "Ledus.S5G058500.t1"; gene_id "Ledus.S5G058500"
Ledus.S5	AUGUSTUS	start_codon	6940799	6940801	.	-	0	transcript_id "Ledus.S5G058500.t1"; gene_id "Ledus.S5G058500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2912.t1 is derived from g347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4532300	4534855	.	-	.	Ledus.S1G033300
Ledus.S1	AUGUSTUS	transcript	4532300	4534855	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	stop_codon	4532297	4532299	.	-	0	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	CDS	4532300	4532318	0.94	-	1	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	exon	4532300	4532318	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	intron	4532319	4532418	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	CDS	4532419	4532702	1	-	0	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	exon	4532419	4532702	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	intron	4532703	4532798	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	CDS	4532799	4532871	1	-	1	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	exon	4532799	4532871	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	intron	4532872	4532955	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	CDS	4532956	4533176	0.99	-	0	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	exon	4532956	4533176	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	intron	4533177	4533325	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	CDS	4533326	4533403	1	-	0	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	exon	4533326	4533403	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	intron	4533404	4533672	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	CDS	4533673	4533735	1	-	0	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	exon	4533673	4533735	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	intron	4533736	4534510	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	CDS	4534511	4534855	0.96	-	0	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	exon	4534511	4534855	.	-	.	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
Ledus.S1	AUGUSTUS	start_codon	4534853	4534855	.	-	0	transcript_id "Ledus.S1G033300.t1"; gene_id "Ledus.S1G033300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1498.t1 is derived from g8359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10591046	10591383	.	-	.	Ledus.S2G138000
Ledus.S2	AUGUSTUS	transcript	10591046	10591383	.	-	.	transcript_id "Ledus.S2G138000.t1"; gene_id "Ledus.S2G138000"
Ledus.S2	AUGUSTUS	stop_codon	10591043	10591045	.	-	0	transcript_id "Ledus.S2G138000.t1"; gene_id "Ledus.S2G138000"
Ledus.S2	AUGUSTUS	CDS	10591046	10591174	0.55	-	0	transcript_id "Ledus.S2G138000.t1"; gene_id "Ledus.S2G138000"
Ledus.S2	AUGUSTUS	exon	10591046	10591174	.	-	.	transcript_id "Ledus.S2G138000.t1"; gene_id "Ledus.S2G138000"
Ledus.S2	AUGUSTUS	intron	10591175	10591254	.	-	.	transcript_id "Ledus.S2G138000.t1"; gene_id "Ledus.S2G138000"
Ledus.S2	AUGUSTUS	CDS	10591255	10591383	0.65	-	0	transcript_id "Ledus.S2G138000.t1"; gene_id "Ledus.S2G138000"
Ledus.S2	AUGUSTUS	exon	10591255	10591383	.	-	.	transcript_id "Ledus.S2G138000.t1"; gene_id "Ledus.S2G138000"
Ledus.S2	AUGUSTUS	start_codon	10591381	10591383	.	-	0	transcript_id "Ledus.S2G138000.t1"; gene_id "Ledus.S2G138000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg647.t1 is derived from g7508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3864463	3870603	.	+	.	Ledus.S2G052900
Ledus.S2	AUGUSTUS	transcript	3864463	3870603	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	start_codon	3864463	3864465	.	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3864463	3864468	0.52	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3864463	3864468	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3864469	3864598	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3864599	3864682	0.85	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3864599	3864682	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3864683	3865229	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3865230	3865322	1	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3865230	3865322	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3865323	3865510	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3865511	3865588	0.98	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3865511	3865588	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3865589	3865706	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3865707	3865841	0.96	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3865707	3865841	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3865842	3865999	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3866000	3866113	1	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3866000	3866113	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3866114	3866261	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3866262	3866390	0.98	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3866262	3866390	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3866391	3866501	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3866502	3866617	1	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3866502	3866617	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3866618	3866699	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3866700	3866817	1	+	1	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3866700	3866817	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3866818	3866929	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3866930	3867035	0.99	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3866930	3867035	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3867036	3867262	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3867263	3867405	1	+	2	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3867263	3867405	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3867406	3867600	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3867601	3867768	1	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3867601	3867768	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3867769	3867891	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3867892	3868002	1	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3867892	3868002	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3868003	3868175	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3868176	3868287	1	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3868176	3868287	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3868288	3868393	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3868394	3868749	1	+	2	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3868394	3868749	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3868750	3868902	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3868903	3868993	1	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3868903	3868993	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3868994	3869099	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3869100	3869195	1	+	2	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3869100	3869195	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3869196	3869319	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3869320	3869390	1	+	2	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3869320	3869390	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3869391	3869636	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3869637	3869767	1	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3869637	3869767	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	intron	3869768	3870524	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	CDS	3870525	3870603	1	+	1	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	exon	3870525	3870603	.	+	.	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
Ledus.S2	AUGUSTUS	stop_codon	3870604	3870606	.	+	0	transcript_id "Ledus.S2G052900.t1"; gene_id "Ledus.S2G052900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3399.t1 is derived from g834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8085797	8089207	.	-	.	Ledus.S1G082000
Ledus.S1	AUGUSTUS	transcript	8085797	8089207	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	stop_codon	8085794	8085796	.	-	0	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	CDS	8085797	8085877	1	-	0	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	exon	8085797	8085877	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	intron	8085878	8085988	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	CDS	8085989	8086157	0.99	-	1	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	exon	8085989	8086157	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	intron	8086158	8086269	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	CDS	8086270	8086525	1	-	2	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	exon	8086270	8086525	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	intron	8086526	8086657	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	CDS	8086658	8086772	1	-	0	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	exon	8086658	8086772	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	intron	8086773	8086950	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	CDS	8086951	8087201	1	-	2	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	exon	8086951	8087201	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	intron	8087202	8087344	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	CDS	8087345	8087705	1	-	0	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	exon	8087345	8087705	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	intron	8087706	8087830	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	CDS	8087831	8087998	1	-	0	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	exon	8087831	8087998	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	intron	8087999	8088083	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	CDS	8088084	8088223	1	-	2	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	exon	8088084	8088223	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	intron	8088224	8088391	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	CDS	8088392	8088524	1	-	0	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	exon	8088392	8088524	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	intron	8088525	8088634	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	CDS	8088635	8088807	0.96	-	2	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	exon	8088635	8088807	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	intron	8088808	8088933	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	CDS	8088934	8089207	0.99	-	0	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	exon	8088934	8089207	.	-	.	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
Ledus.S1	AUGUSTUS	start_codon	8089205	8089207	.	-	0	transcript_id "Ledus.S1G082000.t1"; gene_id "Ledus.S1G082000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7270.t1 is derived from g11941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	659940	661819	.	-	.	Ledus.S5G004800
Ledus.S5	AUGUSTUS	transcript	659940	661819	.	-	.	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	stop_codon	659937	659939	.	-	0	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	CDS	659940	659963	1	-	0	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	exon	659940	659963	.	-	.	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	intron	659964	660062	.	-	.	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	CDS	660063	660275	1	-	0	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	exon	660063	660275	.	-	.	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	intron	660276	660371	.	-	.	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	CDS	660372	660964	1	-	2	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	exon	660372	660964	.	-	.	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	intron	660965	661092	.	-	.	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	CDS	661093	661819	0.89	-	0	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	exon	661093	661819	.	-	.	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
Ledus.S5	AUGUSTUS	start_codon	661817	661819	.	-	0	transcript_id "Ledus.S5G004800.t1"; gene_id "Ledus.S5G004800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5995.t1 is derived from g3438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28191715	28192954	.	-	.	Ledus.S1G341600
Ledus.S1	AUGUSTUS	transcript	28191715	28192954	.	-	.	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	stop_codon	28191712	28191714	.	-	0	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	CDS	28191715	28191827	1	-	2	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	exon	28191715	28191827	.	-	.	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	intron	28191828	28191919	.	-	.	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	CDS	28191920	28191970	1	-	2	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	exon	28191920	28191970	.	-	.	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	intron	28191971	28192125	.	-	.	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	CDS	28192126	28192260	1	-	2	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	exon	28192126	28192260	.	-	.	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	intron	28192261	28192330	.	-	.	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	CDS	28192331	28192643	1	-	0	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	exon	28192331	28192643	.	-	.	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	intron	28192644	28192933	.	-	.	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	CDS	28192934	28192954	1	-	0	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	exon	28192934	28192954	.	-	.	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
Ledus.S1	AUGUSTUS	start_codon	28192952	28192954	.	-	0	transcript_id "Ledus.S1G341600.t1"; gene_id "Ledus.S1G341600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6565.t1 is derived from g4008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32422696	32424215	.	-	.	Ledus.S1G398600
Ledus.S1	AUGUSTUS	transcript	32422696	32424215	.	-	.	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	stop_codon	32422693	32422695	.	-	0	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	CDS	32422696	32422823	1	-	2	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	exon	32422696	32422823	.	-	.	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	intron	32422824	32422919	.	-	.	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	CDS	32422920	32423048	1	-	2	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	exon	32422920	32423048	.	-	.	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	intron	32423049	32423213	.	-	.	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	CDS	32423214	32423266	1	-	1	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	exon	32423214	32423266	.	-	.	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	intron	32423267	32423629	.	-	.	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	CDS	32423630	32423744	1	-	2	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	exon	32423630	32423744	.	-	.	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	intron	32423745	32423921	.	-	.	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	CDS	32423922	32424001	1	-	1	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	exon	32423922	32424001	.	-	.	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	intron	32424002	32424171	.	-	.	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	CDS	32424172	32424215	0.92	-	0	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	exon	32424172	32424215	.	-	.	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
Ledus.S1	AUGUSTUS	start_codon	32424213	32424215	.	-	0	transcript_id "Ledus.S1G398600.t1"; gene_id "Ledus.S1G398600"
# This transcript jg8746.t1 is derived from g9776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1769556	1770367	.	+	.	Ledus.S3G022300
Ledus.S3	AUGUSTUS	transcript	1769556	1770367	.	+	.	transcript_id "Ledus.S3G022300.t1"; gene_id "Ledus.S3G022300"
Ledus.S3	AUGUSTUS	start_codon	1769556	1769558	.	+	0	transcript_id "Ledus.S3G022300.t1"; gene_id "Ledus.S3G022300"
Ledus.S3	AUGUSTUS	CDS	1769556	1770204	0.41	+	0	transcript_id "Ledus.S3G022300.t1"; gene_id "Ledus.S3G022300"
Ledus.S3	AUGUSTUS	exon	1769556	1770204	.	+	.	transcript_id "Ledus.S3G022300.t1"; gene_id "Ledus.S3G022300"
Ledus.S3	AUGUSTUS	intron	1770205	1770281	.	+	.	transcript_id "Ledus.S3G022300.t1"; gene_id "Ledus.S3G022300"
Ledus.S3	AUGUSTUS	CDS	1770282	1770367	0.5	+	2	transcript_id "Ledus.S3G022300.t1"; gene_id "Ledus.S3G022300"
Ledus.S3	AUGUSTUS	exon	1770282	1770367	.	+	.	transcript_id "Ledus.S3G022300.t1"; gene_id "Ledus.S3G022300"
Ledus.S3	AUGUSTUS	stop_codon	1770368	1770370	.	+	0	transcript_id "Ledus.S3G022300.t1"; gene_id "Ledus.S3G022300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11729.t1 is derived from g5348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6295000	6295350	.	-	.	Ledus.S4G088500
Ledus.S4	AUGUSTUS	transcript	6295000	6295350	.	-	.	transcript_id "Ledus.S4G088500.t1"; gene_id "Ledus.S4G088500"
Ledus.S4	AUGUSTUS	stop_codon	6294997	6294999	.	-	0	transcript_id "Ledus.S4G088500.t1"; gene_id "Ledus.S4G088500"
Ledus.S4	AUGUSTUS	CDS	6295000	6295350	0.35	-	0	transcript_id "Ledus.S4G088500.t1"; gene_id "Ledus.S4G088500"
Ledus.S4	AUGUSTUS	exon	6295000	6295350	.	-	.	transcript_id "Ledus.S4G088500.t1"; gene_id "Ledus.S4G088500"
Ledus.S4	AUGUSTUS	start_codon	6295348	6295350	.	-	0	transcript_id "Ledus.S4G088500.t1"; gene_id "Ledus.S4G088500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6543.t1 is derived from g3986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32233010	32233447	.	+	.	Ledus.S1G396400
Ledus.S1	AUGUSTUS	transcript	32233010	32233447	.	+	.	transcript_id "Ledus.S1G396400.t1"; gene_id "Ledus.S1G396400"
Ledus.S1	AUGUSTUS	start_codon	32233010	32233012	.	+	0	transcript_id "Ledus.S1G396400.t1"; gene_id "Ledus.S1G396400"
Ledus.S1	AUGUSTUS	CDS	32233010	32233447	0.5	+	0	transcript_id "Ledus.S1G396400.t1"; gene_id "Ledus.S1G396400"
Ledus.S1	AUGUSTUS	exon	32233010	32233447	.	+	.	transcript_id "Ledus.S1G396400.t1"; gene_id "Ledus.S1G396400"
Ledus.S1	AUGUSTUS	stop_codon	32233448	32233450	.	+	0	transcript_id "Ledus.S1G396400.t1"; gene_id "Ledus.S1G396400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg689.t1 is derived from g7550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4195158	4196957	.	+	.	Ledus.S2G057100
Ledus.S2	AUGUSTUS	transcript	4195158	4196957	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	start_codon	4195158	4195160	.	+	0	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	CDS	4195158	4195278	0.95	+	0	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	exon	4195158	4195278	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	intron	4195279	4195407	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	CDS	4195408	4195568	0.98	+	2	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	exon	4195408	4195568	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	intron	4195569	4195682	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	CDS	4195683	4195731	1	+	0	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	exon	4195683	4195731	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	intron	4195732	4195823	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	CDS	4195824	4195950	1	+	2	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	exon	4195824	4195950	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	intron	4195951	4196027	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	CDS	4196028	4196093	1	+	1	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	exon	4196028	4196093	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	intron	4196094	4196195	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	CDS	4196196	4196312	1	+	1	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	exon	4196196	4196312	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	intron	4196313	4196422	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	CDS	4196423	4196585	1	+	1	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	exon	4196423	4196585	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	intron	4196586	4196672	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	CDS	4196673	4196743	0.98	+	0	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	exon	4196673	4196743	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	intron	4196744	4196827	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	CDS	4196828	4196957	0.51	+	1	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	exon	4196828	4196957	.	+	.	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
Ledus.S2	AUGUSTUS	stop_codon	4196958	4196960	.	+	0	transcript_id "Ledus.S2G057100.t1"; gene_id "Ledus.S2G057100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7018.t1 is derived from g6549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	829029	829985	.	-	.	Ledus.C7G007900
Ledus.C7	AUGUSTUS	transcript	829029	829985	.	-	.	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	stop_codon	829026	829028	.	-	0	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	CDS	829029	829131	1	-	1	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	exon	829029	829131	.	-	.	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	intron	829132	829214	.	-	.	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	CDS	829215	829480	1	-	0	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	exon	829215	829480	.	-	.	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	intron	829481	829552	.	-	.	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	CDS	829553	829613	1	-	1	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	exon	829553	829613	.	-	.	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	intron	829614	829720	.	-	.	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	CDS	829721	829813	1	-	1	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	exon	829721	829813	.	-	.	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	intron	829814	829875	.	-	.	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	CDS	829876	829985	0.68	-	0	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	exon	829876	829985	.	-	.	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
Ledus.C7	AUGUSTUS	start_codon	829983	829985	.	-	0	transcript_id "Ledus.C7G007900.t1"; gene_id "Ledus.C7G007900"
# This transcript jg9644.t2 is derived from g10674.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9645.t1 is derived from g10675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8618399	8619099	.	+	.	Ledus.S3G112200
Ledus.S3	AUGUSTUS	transcript	8618399	8619099	.	+	.	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	start_codon	8618399	8618401	.	+	0	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	CDS	8618399	8618426	0.8	+	0	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	exon	8618399	8618426	.	+	.	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	intron	8618427	8618585	.	+	.	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	CDS	8618586	8618659	1	+	2	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	exon	8618586	8618659	.	+	.	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	intron	8618660	8618750	.	+	.	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	CDS	8618751	8618879	1	+	0	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	exon	8618751	8618879	.	+	.	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	intron	8618880	8619000	.	+	.	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	CDS	8619001	8619099	1	+	0	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	exon	8619001	8619099	.	+	.	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
Ledus.S3	AUGUSTUS	stop_codon	8619100	8619102	.	+	0	transcript_id "Ledus.S3G112200.t1"; gene_id "Ledus.S3G112200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1011.t1 is derived from g7872.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6747750	6748344	.	-	.	Ledus.S2G089300
Ledus.S2	AUGUSTUS	transcript	6747750	6748344	.	-	.	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	stop_codon	6747747	6747749	.	-	0	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	CDS	6747750	6747840	0.99	-	1	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	exon	6747750	6747840	.	-	.	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	intron	6747841	6747939	.	-	.	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	CDS	6747940	6748063	1	-	2	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	exon	6747940	6748063	.	-	.	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	intron	6748064	6748141	.	-	.	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	CDS	6748142	6748171	1	-	2	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	exon	6748142	6748171	.	-	.	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	intron	6748172	6748268	.	-	.	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	CDS	6748269	6748344	0.84	-	0	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	exon	6748269	6748344	.	-	.	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
Ledus.S2	AUGUSTUS	start_codon	6748342	6748344	.	-	0	transcript_id "Ledus.S2G089300.t1"; gene_id "Ledus.S2G089300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7652.t1 is derived from g12323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4819317	4820496	.	-	.	Ledus.S5G043000
Ledus.S5	AUGUSTUS	transcript	4819317	4820496	.	-	.	transcript_id "Ledus.S5G043000.t1"; gene_id "Ledus.S5G043000"
Ledus.S5	AUGUSTUS	stop_codon	4819314	4819316	.	-	0	transcript_id "Ledus.S5G043000.t1"; gene_id "Ledus.S5G043000"
Ledus.S5	AUGUSTUS	CDS	4819317	4819434	0.47	-	1	transcript_id "Ledus.S5G043000.t1"; gene_id "Ledus.S5G043000"
Ledus.S5	AUGUSTUS	exon	4819317	4819434	.	-	.	transcript_id "Ledus.S5G043000.t1"; gene_id "Ledus.S5G043000"
Ledus.S5	AUGUSTUS	intron	4819435	4819563	.	-	.	transcript_id "Ledus.S5G043000.t1"; gene_id "Ledus.S5G043000"
Ledus.S5	AUGUSTUS	CDS	4819564	4819667	0.83	-	0	transcript_id "Ledus.S5G043000.t1"; gene_id "Ledus.S5G043000"
Ledus.S5	AUGUSTUS	exon	4819564	4819667	.	-	.	transcript_id "Ledus.S5G043000.t1"; gene_id "Ledus.S5G043000"
Ledus.S5	AUGUSTUS	intron	4819668	4819758	.	-	.	transcript_id "Ledus.S5G043000.t1"; gene_id "Ledus.S5G043000"
Ledus.S5	AUGUSTUS	CDS	4819759	4820496	0.52	-	0	transcript_id "Ledus.S5G043000.t1"; gene_id "Ledus.S5G043000"
Ledus.S5	AUGUSTUS	exon	4819759	4820496	.	-	.	transcript_id "Ledus.S5G043000.t1"; gene_id "Ledus.S5G043000"
Ledus.S5	AUGUSTUS	start_codon	4820494	4820496	.	-	0	transcript_id "Ledus.S5G043000.t1"; gene_id "Ledus.S5G043000"
# This transcript jg11792.t2 is derived from g5411.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11793.t1 is derived from g5412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6813346	6814630	.	+	.	Ledus.S4G094900
Ledus.S4	AUGUSTUS	transcript	6813346	6814630	.	+	.	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	start_codon	6813346	6813348	.	+	0	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	CDS	6813346	6813406	0.71	+	0	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	exon	6813346	6813406	.	+	.	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	intron	6813407	6813551	.	+	.	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	CDS	6813552	6813841	1	+	2	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	exon	6813552	6813841	.	+	.	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	intron	6813842	6813939	.	+	.	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	CDS	6813940	6814053	1	+	0	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	exon	6813940	6814053	.	+	.	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	intron	6814054	6814153	.	+	.	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	CDS	6814154	6814630	1	+	0	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	exon	6814154	6814630	.	+	.	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
Ledus.S4	AUGUSTUS	stop_codon	6814631	6814633	.	+	0	transcript_id "Ledus.S4G094900.t1"; gene_id "Ledus.S4G094900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9996.t1 is derived from g11026.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11773564	11774295	.	-	.	Ledus.S3G147300
Ledus.S3	AUGUSTUS	transcript	11773564	11774295	.	-	.	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	stop_codon	11773561	11773563	.	-	0	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	CDS	11773564	11773662	0.42	-	0	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	exon	11773564	11773662	.	-	.	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	intron	11773663	11773736	.	-	.	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	CDS	11773737	11773810	1	-	2	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	exon	11773737	11773810	.	-	.	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	intron	11773811	11773884	.	-	.	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	CDS	11773885	11773903	0.97	-	0	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	exon	11773885	11773903	.	-	.	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	intron	11773904	11774030	.	-	.	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	CDS	11774031	11774108	0.89	-	0	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	exon	11774031	11774108	.	-	.	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	intron	11774109	11774199	.	-	.	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	CDS	11774200	11774295	0.91	-	0	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	exon	11774200	11774295	.	-	.	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	start_codon	11774293	11774295	.	-	0	transcript_id "Ledus.S3G147300.t1"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	transcript	11773564	11774240	.	-	.	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	stop_codon	11773561	11773563	.	-	0	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	CDS	11773564	11773662	0.48	-	0	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	exon	11773564	11773662	.	-	.	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	intron	11773663	11773736	.	-	.	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	CDS	11773737	11773810	1	-	2	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	exon	11773737	11773810	.	-	.	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	intron	11773811	11773884	.	-	.	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	CDS	11773885	11773903	0.98	-	0	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	exon	11773885	11773903	.	-	.	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	intron	11773904	11774030	.	-	.	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	CDS	11774031	11774108	0.71	-	0	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	exon	11774031	11774108	.	-	.	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	intron	11774109	11774192	.	-	.	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	CDS	11774193	11774240	0.24	-	0	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	exon	11774193	11774240	.	-	.	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
Ledus.S3	AUGUSTUS	start_codon	11774238	11774240	.	-	0	transcript_id "Ledus.S3G147300.t2"; gene_id "Ledus.S3G147300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4931.t1 is derived from g2369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20741164	20742105	.	+	.	Ledus.S1G235200
Ledus.S1	AUGUSTUS	transcript	20741164	20742105	.	+	.	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	start_codon	20741164	20741166	.	+	0	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	CDS	20741164	20741225	0.65	+	0	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	exon	20741164	20741225	.	+	.	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	intron	20741226	20741308	.	+	.	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	CDS	20741309	20741441	0.89	+	1	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	exon	20741309	20741441	.	+	.	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	intron	20741442	20741737	.	+	.	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	CDS	20741738	20741895	0.9	+	0	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	exon	20741738	20741895	.	+	.	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	intron	20741896	20741978	.	+	.	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	CDS	20741979	20742105	0.59	+	1	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	exon	20741979	20742105	.	+	.	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
Ledus.S1	AUGUSTUS	stop_codon	20742106	20742108	.	+	0	transcript_id "Ledus.S1G235200.t1"; gene_id "Ledus.S1G235200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4765.t1 is derived from g2203.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19656611	19662427	.	-	.	Ledus.S1G218600
Ledus.S1	AUGUSTUS	transcript	19656611	19662427	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	stop_codon	19656608	19656610	.	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19656611	19656925	0.73	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19656611	19656925	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19656926	19657031	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19657032	19657100	1	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19657032	19657100	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19657101	19657256	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19657257	19657352	1	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19657257	19657352	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19657353	19657435	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19657436	19657558	0.99	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19657436	19657558	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19657559	19657659	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19657660	19657977	0.87	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19657660	19657977	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19657978	19658185	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19658186	19658218	1	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19658186	19658218	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19658219	19658307	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19658308	19658400	1	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19658308	19658400	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19658401	19658539	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19658540	19658653	0.99	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19658540	19658653	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19658654	19658765	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19658766	19658810	1	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19658766	19658810	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19658811	19658900	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19658901	19658942	1	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19658901	19658942	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19658943	19659078	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19659079	19659113	1	-	2	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19659079	19659113	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19659114	19659203	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19659204	19659342	0.98	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19659204	19659342	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19659343	19659553	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19659554	19659663	0.76	-	2	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19659554	19659663	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19659664	19659795	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19659796	19659859	0.97	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19659796	19659859	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19659860	19660038	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19660039	19660118	1	-	2	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19660039	19660118	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19660119	19660259	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19660260	19660392	1	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19660260	19660392	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19660393	19660524	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19660525	19660665	1	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19660525	19660665	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19660666	19660760	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19660761	19660826	1	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19660761	19660826	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19660827	19660951	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19660952	19661239	1	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19660952	19661239	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19661240	19661748	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19661749	19661759	0.98	-	2	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19661749	19661759	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19661760	19662072	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19662073	19662125	1	-	1	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19662073	19662125	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19662126	19662371	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19662372	19662427	0.72	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19662372	19662427	.	-	.	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	start_codon	19662425	19662427	.	-	0	transcript_id "Ledus.S1G218600.t1"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	transcript	19656611	19662427	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	stop_codon	19656608	19656610	.	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19656611	19656925	0.73	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19656611	19656925	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19656926	19657031	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19657032	19657100	1	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19657032	19657100	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19657101	19657256	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19657257	19657352	1	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19657257	19657352	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19657353	19657435	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19657436	19657558	0.97	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19657436	19657558	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19657559	19657659	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19657660	19657977	0.81	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19657660	19657977	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19657978	19658185	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19658186	19658218	1	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19658186	19658218	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19658219	19658307	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19658308	19658400	1	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19658308	19658400	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19658401	19658539	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19658540	19658653	0.98	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19658540	19658653	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19658654	19658765	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19658766	19658810	1	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19658766	19658810	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19658811	19658900	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19658901	19658942	1	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19658901	19658942	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19658943	19659078	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19659079	19659113	1	-	2	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19659079	19659113	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19659114	19659203	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19659204	19659342	1	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19659204	19659342	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19659343	19659553	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19659554	19659663	0.67	-	2	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19659554	19659663	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19659664	19659795	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19659796	19659859	0.99	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19659796	19659859	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19659860	19660038	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19660039	19660118	1	-	2	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19660039	19660118	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19660119	19660325	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19660326	19660392	1	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19660326	19660392	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19660393	19660524	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19660525	19660665	1	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19660525	19660665	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19660666	19660760	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19660761	19660826	1	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19660761	19660826	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19660827	19660951	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19660952	19661239	1	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19660952	19661239	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19661240	19661748	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19661749	19661759	0.91	-	2	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19661749	19661759	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19661760	19662072	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19662073	19662125	1	-	1	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19662073	19662125	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	intron	19662126	19662371	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	CDS	19662372	19662427	0.8	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	exon	19662372	19662427	.	-	.	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
Ledus.S1	AUGUSTUS	start_codon	19662425	19662427	.	-	0	transcript_id "Ledus.S1G218600.t2"; gene_id "Ledus.S1G218600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11171.t1 is derived from g4789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2352728	2354552	.	-	.	Ledus.S4G032700
Ledus.S4	AUGUSTUS	transcript	2352728	2354552	.	-	.	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	stop_codon	2352725	2352727	.	-	0	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	CDS	2352728	2353624	1	-	0	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	exon	2352728	2353624	.	-	.	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	intron	2353625	2353700	.	-	.	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	CDS	2353701	2354103	0.53	-	1	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	exon	2353701	2354103	.	-	.	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	intron	2354104	2354282	.	-	.	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	CDS	2354283	2354288	0.71	-	1	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	exon	2354283	2354288	.	-	.	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	intron	2354289	2354484	.	-	.	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	CDS	2354485	2354552	0.45	-	0	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	exon	2354485	2354552	.	-	.	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
Ledus.S4	AUGUSTUS	start_codon	2354550	2354552	.	-	0	transcript_id "Ledus.S4G032700.t1"; gene_id "Ledus.S4G032700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10870.t1 is derived from g4488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	179692	182779	.	+	.	Ledus.S4G002600
Ledus.S4	AUGUSTUS	transcript	179692	182779	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	start_codon	179692	179694	.	+	0	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	CDS	179692	180090	0.86	+	0	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	exon	179692	180090	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	intron	180091	180199	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	CDS	180200	180290	1	+	0	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	exon	180200	180290	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	intron	180291	180943	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	CDS	180944	181049	0.99	+	2	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	exon	180944	181049	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	intron	181050	181125	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	CDS	181126	181411	0.99	+	1	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	exon	181126	181411	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	intron	181412	181499	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	CDS	181500	181651	0.92	+	0	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	exon	181500	181651	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	intron	181652	181735	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	CDS	181736	181889	0.99	+	1	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	exon	181736	181889	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	intron	181890	181967	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	CDS	181968	182678	0.6	+	0	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	exon	181968	182678	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	intron	182679	182767	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	CDS	182768	182779	0.6	+	0	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	exon	182768	182779	.	+	.	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
Ledus.S4	AUGUSTUS	stop_codon	182780	182782	.	+	0	transcript_id "Ledus.S4G002600.t1"; gene_id "Ledus.S4G002600"
# This transcript jg12510.t2 is derived from g6131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12511.t1 is derived from g6132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12573694	12574026	.	-	.	Ledus.S4G166700
Ledus.S4	AUGUSTUS	transcript	12573694	12574026	.	-	.	transcript_id "Ledus.S4G166700.t1"; gene_id "Ledus.S4G166700"
Ledus.S4	AUGUSTUS	stop_codon	12573691	12573693	.	-	0	transcript_id "Ledus.S4G166700.t1"; gene_id "Ledus.S4G166700"
Ledus.S4	AUGUSTUS	CDS	12573694	12574026	0.57	-	0	transcript_id "Ledus.S4G166700.t1"; gene_id "Ledus.S4G166700"
Ledus.S4	AUGUSTUS	exon	12573694	12574026	.	-	.	transcript_id "Ledus.S4G166700.t1"; gene_id "Ledus.S4G166700"
Ledus.S4	AUGUSTUS	start_codon	12574024	12574026	.	-	0	transcript_id "Ledus.S4G166700.t1"; gene_id "Ledus.S4G166700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7250.t1 is derived from g11921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	437873	438211	.	-	.	Ledus.S5G002800
Ledus.S5	AUGUSTUS	transcript	437873	438211	.	-	.	transcript_id "Ledus.S5G002800.t1"; gene_id "Ledus.S5G002800"
Ledus.S5	AUGUSTUS	stop_codon	437870	437872	.	-	0	transcript_id "Ledus.S5G002800.t1"; gene_id "Ledus.S5G002800"
Ledus.S5	AUGUSTUS	CDS	437873	438211	0.39	-	0	transcript_id "Ledus.S5G002800.t1"; gene_id "Ledus.S5G002800"
Ledus.S5	AUGUSTUS	exon	437873	438211	.	-	.	transcript_id "Ledus.S5G002800.t1"; gene_id "Ledus.S5G002800"
Ledus.S5	AUGUSTUS	start_codon	438209	438211	.	-	0	transcript_id "Ledus.S5G002800.t1"; gene_id "Ledus.S5G002800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2156.t1 is derived from g9019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15335203	15335883	.	-	.	Ledus.S2G203800
Ledus.S2	AUGUSTUS	transcript	15335203	15335883	.	-	.	transcript_id "Ledus.S2G203800.t1"; gene_id "Ledus.S2G203800"
Ledus.S2	AUGUSTUS	stop_codon	15335200	15335202	.	-	0	transcript_id "Ledus.S2G203800.t1"; gene_id "Ledus.S2G203800"
Ledus.S2	AUGUSTUS	CDS	15335203	15335883	0.94	-	0	transcript_id "Ledus.S2G203800.t1"; gene_id "Ledus.S2G203800"
Ledus.S2	AUGUSTUS	exon	15335203	15335883	.	-	.	transcript_id "Ledus.S2G203800.t1"; gene_id "Ledus.S2G203800"
Ledus.S2	AUGUSTUS	start_codon	15335881	15335883	.	-	0	transcript_id "Ledus.S2G203800.t1"; gene_id "Ledus.S2G203800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8876.t1 is derived from g9906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2773435	2777698	.	+	.	Ledus.S3G035300
Ledus.S3	AUGUSTUS	transcript	2773435	2777698	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	start_codon	2773435	2773437	.	+	0	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2773435	2773533	1	+	0	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2773435	2773533	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2773534	2773728	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2773729	2773827	0.98	+	0	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2773729	2773827	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2773828	2773937	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2773938	2773983	1	+	0	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2773938	2773983	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2773984	2774067	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2774068	2774243	1	+	2	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2774068	2774243	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2774244	2774313	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2774314	2774916	1	+	0	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2774314	2774916	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2774917	2775014	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2775015	2775236	1	+	0	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2775015	2775236	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2775237	2775413	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2775414	2775620	1	+	0	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2775414	2775620	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2775621	2775774	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2775775	2775895	1	+	0	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2775775	2775895	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2775896	2775982	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2775983	2776202	1	+	2	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2775983	2776202	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2776203	2776296	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2776297	2776426	1	+	1	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2776297	2776426	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2776427	2776513	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2776514	2776592	0.96	+	0	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2776514	2776592	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2776593	2776840	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2776841	2776857	1	+	2	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2776841	2776857	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2776858	2777025	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2777026	2777160	0.9	+	0	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2777026	2777160	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2777161	2777232	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2777233	2777341	1	+	0	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2777233	2777341	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2777342	2777473	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2777474	2777569	1	+	2	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2777474	2777569	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	intron	2777570	2777669	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	CDS	2777670	2777698	1	+	2	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	exon	2777670	2777698	.	+	.	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
Ledus.S3	AUGUSTUS	stop_codon	2777699	2777701	.	+	0	transcript_id "Ledus.S3G035300.t1"; gene_id "Ledus.S3G035300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1169.t1 is derived from g8030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8051795	8053190	.	+	.	Ledus.S2G105100
Ledus.S2	AUGUSTUS	transcript	8051795	8053190	.	+	.	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	start_codon	8051795	8051797	.	+	0	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	CDS	8051795	8051985	0.73	+	0	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	exon	8051795	8051985	.	+	.	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	intron	8051986	8052203	.	+	.	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	CDS	8052204	8052306	1	+	1	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	exon	8052204	8052306	.	+	.	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	intron	8052307	8052391	.	+	.	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	CDS	8052392	8052680	1	+	0	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	exon	8052392	8052680	.	+	.	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	intron	8052681	8052780	.	+	.	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	CDS	8052781	8052916	1	+	2	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	exon	8052781	8052916	.	+	.	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	intron	8052917	8053093	.	+	.	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	CDS	8053094	8053190	1	+	1	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	exon	8053094	8053190	.	+	.	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
Ledus.S2	AUGUSTUS	stop_codon	8053191	8053193	.	+	0	transcript_id "Ledus.S2G105100.t1"; gene_id "Ledus.S2G105100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11026.t1 is derived from g4644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1270715	1285067	.	+	.	Ledus.S4G018200
Ledus.S4	AUGUSTUS	transcript	1270715	1285067	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	start_codon	1270715	1270717	.	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1270715	1271159	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1270715	1271159	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1271160	1271258	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1271259	1271734	0.99	+	2	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1271259	1271734	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1271735	1271867	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1271868	1272023	0.98	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1271868	1272023	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1272024	1272117	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1272118	1272201	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1272118	1272201	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1272202	1272290	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1272291	1272410	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1272291	1272410	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1272411	1272494	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1272495	1272608	0.81	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1272495	1272608	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1272609	1272724	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1272725	1272835	0.68	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1272725	1272835	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1272836	1272923	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1272924	1273013	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1272924	1273013	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1273014	1273112	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1273113	1273183	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1273113	1273183	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1273184	1273271	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1273272	1273346	0.92	+	1	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1273272	1273346	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1273347	1273424	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1273425	1273473	0.61	+	1	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1273425	1273473	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1273474	1273571	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1273572	1273654	0.74	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1273572	1273654	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1273655	1273751	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1273752	1273815	1	+	1	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1273752	1273815	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1273816	1273901	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1273902	1273967	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1273902	1273967	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1273968	1274048	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1274049	1274243	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1274049	1274243	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1274244	1274340	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1274341	1274445	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1274341	1274445	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1274446	1274536	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1274537	1274772	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1274537	1274772	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1274773	1274855	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1274856	1274925	1	+	1	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1274856	1274925	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1274926	1275146	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1275147	1275215	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1275147	1275215	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1275216	1275313	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1275314	1275376	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1275314	1275376	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1275377	1275466	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1275467	1275546	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1275467	1275546	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1275547	1275650	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1275651	1275723	1	+	1	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1275651	1275723	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1275724	1275859	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1275860	1275955	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1275860	1275955	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1275956	1276045	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1276046	1276129	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1276046	1276129	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1276130	1276219	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1276220	1276342	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1276220	1276342	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1276343	1276439	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1276440	1276562	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1276440	1276562	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1276563	1276653	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1276654	1282356	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1276654	1282356	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1282357	1282488	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1282489	1282596	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1282489	1282596	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1282597	1282681	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1282682	1282857	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1282682	1282857	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1282858	1282943	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1282944	1283031	1	+	1	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1282944	1283031	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1283032	1283117	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1283118	1283348	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1283118	1283348	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1283349	1283438	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1283439	1283537	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1283439	1283537	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1283538	1283631	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1283632	1283706	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1283632	1283706	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1283707	1283787	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1283788	1283846	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1283788	1283846	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1283847	1283951	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1283952	1284063	1	+	1	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1283952	1284063	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1284064	1284145	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1284146	1284256	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1284146	1284256	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1284257	1284333	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1284334	1284504	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1284334	1284504	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1284505	1284591	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1284592	1284657	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1284592	1284657	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1284658	1284744	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1284745	1284864	1	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1284745	1284864	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	intron	1284865	1284959	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	CDS	1284960	1285067	0.74	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	exon	1284960	1285067	.	+	.	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
Ledus.S4	AUGUSTUS	stop_codon	1285068	1285070	.	+	0	transcript_id "Ledus.S4G018200.t1"; gene_id "Ledus.S4G018200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12788.t1 is derived from g6410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14491630	14491836	.	+	.	Ledus.S4G194400
Ledus.S4	AUGUSTUS	transcript	14491630	14491836	.	+	.	transcript_id "Ledus.S4G194400.t1"; gene_id "Ledus.S4G194400"
Ledus.S4	AUGUSTUS	start_codon	14491630	14491632	.	+	0	transcript_id "Ledus.S4G194400.t1"; gene_id "Ledus.S4G194400"
Ledus.S4	AUGUSTUS	CDS	14491630	14491836	0.63	+	0	transcript_id "Ledus.S4G194400.t1"; gene_id "Ledus.S4G194400"
Ledus.S4	AUGUSTUS	exon	14491630	14491836	.	+	.	transcript_id "Ledus.S4G194400.t1"; gene_id "Ledus.S4G194400"
Ledus.S4	AUGUSTUS	stop_codon	14491837	14491839	.	+	0	transcript_id "Ledus.S4G194400.t1"; gene_id "Ledus.S4G194400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4891.t1 is derived from g2329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20558503	20559329	.	+	.	Ledus.S1G231200
Ledus.S1	AUGUSTUS	transcript	20558503	20559329	.	+	.	transcript_id "Ledus.S1G231200.t1"; gene_id "Ledus.S1G231200"
Ledus.S1	AUGUSTUS	start_codon	20558503	20558505	.	+	0	transcript_id "Ledus.S1G231200.t1"; gene_id "Ledus.S1G231200"
Ledus.S1	AUGUSTUS	CDS	20558503	20558546	0.57	+	0	transcript_id "Ledus.S1G231200.t1"; gene_id "Ledus.S1G231200"
Ledus.S1	AUGUSTUS	exon	20558503	20558546	.	+	.	transcript_id "Ledus.S1G231200.t1"; gene_id "Ledus.S1G231200"
Ledus.S1	AUGUSTUS	intron	20558547	20558633	.	+	.	transcript_id "Ledus.S1G231200.t1"; gene_id "Ledus.S1G231200"
Ledus.S1	AUGUSTUS	CDS	20558634	20558703	0.64	+	1	transcript_id "Ledus.S1G231200.t1"; gene_id "Ledus.S1G231200"
Ledus.S1	AUGUSTUS	exon	20558634	20558703	.	+	.	transcript_id "Ledus.S1G231200.t1"; gene_id "Ledus.S1G231200"
Ledus.S1	AUGUSTUS	intron	20558704	20559020	.	+	.	transcript_id "Ledus.S1G231200.t1"; gene_id "Ledus.S1G231200"
Ledus.S1	AUGUSTUS	CDS	20559021	20559329	0.62	+	0	transcript_id "Ledus.S1G231200.t1"; gene_id "Ledus.S1G231200"
Ledus.S1	AUGUSTUS	exon	20559021	20559329	.	+	.	transcript_id "Ledus.S1G231200.t1"; gene_id "Ledus.S1G231200"
Ledus.S1	AUGUSTUS	stop_codon	20559330	20559332	.	+	0	transcript_id "Ledus.S1G231200.t1"; gene_id "Ledus.S1G231200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6077.t1 is derived from g3520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28826411	28828903	.	+	.	Ledus.S1G349800
Ledus.S1	AUGUSTUS	transcript	28826411	28828903	.	+	.	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	start_codon	28826411	28826413	.	+	0	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	CDS	28826411	28826633	1	+	0	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	exon	28826411	28826633	.	+	.	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	intron	28826634	28826727	.	+	.	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	CDS	28826728	28826969	1	+	2	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	exon	28826728	28826969	.	+	.	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	intron	28826970	28827065	.	+	.	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	CDS	28827066	28828073	0.98	+	0	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	exon	28827066	28828073	.	+	.	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	intron	28828074	28828589	.	+	.	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	CDS	28828590	28828656	0.83	+	0	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	exon	28828590	28828656	.	+	.	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	intron	28828657	28828773	.	+	.	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	CDS	28828774	28828819	0.96	+	2	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	exon	28828774	28828819	.	+	.	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	intron	28828820	28828899	.	+	.	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	CDS	28828900	28828903	1	+	1	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	exon	28828900	28828903	.	+	.	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
Ledus.S1	AUGUSTUS	stop_codon	28828904	28828906	.	+	0	transcript_id "Ledus.S1G349800.t1"; gene_id "Ledus.S1G349800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10285.t1 is derived from g11315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14011472	14011774	.	-	.	Ledus.S3G176200
Ledus.S3	AUGUSTUS	transcript	14011472	14011774	.	-	.	transcript_id "Ledus.S3G176200.t1"; gene_id "Ledus.S3G176200"
Ledus.S3	AUGUSTUS	stop_codon	14011469	14011471	.	-	0	transcript_id "Ledus.S3G176200.t1"; gene_id "Ledus.S3G176200"
Ledus.S3	AUGUSTUS	CDS	14011472	14011774	0.98	-	0	transcript_id "Ledus.S3G176200.t1"; gene_id "Ledus.S3G176200"
Ledus.S3	AUGUSTUS	exon	14011472	14011774	.	-	.	transcript_id "Ledus.S3G176200.t1"; gene_id "Ledus.S3G176200"
Ledus.S3	AUGUSTUS	start_codon	14011772	14011774	.	-	0	transcript_id "Ledus.S3G176200.t1"; gene_id "Ledus.S3G176200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7966.t1 is derived from g12637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8276321	8277943	.	+	.	Ledus.S5G074400
Ledus.S5	AUGUSTUS	transcript	8276321	8277943	.	+	.	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	start_codon	8276321	8276323	.	+	0	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	CDS	8276321	8276455	0.53	+	0	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	exon	8276321	8276455	.	+	.	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	intron	8276456	8276572	.	+	.	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	CDS	8276573	8276637	0.76	+	0	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	exon	8276573	8276637	.	+	.	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	intron	8276638	8276739	.	+	.	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	CDS	8276740	8277109	0.83	+	1	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	exon	8276740	8277109	.	+	.	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	intron	8277110	8277209	.	+	.	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	CDS	8277210	8277461	1	+	0	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	exon	8277210	8277461	.	+	.	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	intron	8277462	8277562	.	+	.	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	CDS	8277563	8277943	0.88	+	0	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	exon	8277563	8277943	.	+	.	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
Ledus.S5	AUGUSTUS	stop_codon	8277944	8277946	.	+	0	transcript_id "Ledus.S5G074400.t1"; gene_id "Ledus.S5G074400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2082.t1 is derived from g8945.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14637695	14638508	.	-	.	Ledus.S2G196400
Ledus.S2	AUGUSTUS	transcript	14637695	14638508	.	-	.	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	stop_codon	14637692	14637694	.	-	0	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	CDS	14637695	14637787	1	-	0	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	exon	14637695	14637787	.	-	.	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	intron	14637788	14637870	.	-	.	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	CDS	14637871	14637947	1	-	2	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	exon	14637871	14637947	.	-	.	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	intron	14637948	14638015	.	-	.	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	CDS	14638016	14638175	1	-	0	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	exon	14638016	14638175	.	-	.	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	intron	14638176	14638262	.	-	.	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	CDS	14638263	14638508	0.98	-	0	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	exon	14638263	14638508	.	-	.	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	start_codon	14638506	14638508	.	-	0	transcript_id "Ledus.S2G196400.t1"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	transcript	14637700	14638508	.	-	.	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	stop_codon	14637697	14637699	.	-	0	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	CDS	14637700	14637771	1	-	0	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	exon	14637700	14637771	.	-	.	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	intron	14637772	14637870	.	-	.	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	CDS	14637871	14637947	1	-	2	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	exon	14637871	14637947	.	-	.	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	intron	14637948	14638015	.	-	.	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	CDS	14638016	14638175	1	-	0	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	exon	14638016	14638175	.	-	.	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	intron	14638176	14638262	.	-	.	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	CDS	14638263	14638508	0.98	-	0	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	exon	14638263	14638508	.	-	.	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
Ledus.S2	AUGUSTUS	start_codon	14638506	14638508	.	-	0	transcript_id "Ledus.S2G196400.t2"; gene_id "Ledus.S2G196400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9380.t1 is derived from g10410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6448060	6448452	.	-	.	Ledus.S3G085700
Ledus.S3	AUGUSTUS	transcript	6448060	6448452	.	-	.	transcript_id "Ledus.S3G085700.t1"; gene_id "Ledus.S3G085700"
Ledus.S3	AUGUSTUS	stop_codon	6448057	6448059	.	-	0	transcript_id "Ledus.S3G085700.t1"; gene_id "Ledus.S3G085700"
Ledus.S3	AUGUSTUS	CDS	6448060	6448452	0.23	-	0	transcript_id "Ledus.S3G085700.t1"; gene_id "Ledus.S3G085700"
Ledus.S3	AUGUSTUS	exon	6448060	6448452	.	-	.	transcript_id "Ledus.S3G085700.t1"; gene_id "Ledus.S3G085700"
Ledus.S3	AUGUSTUS	start_codon	6448450	6448452	.	-	0	transcript_id "Ledus.S3G085700.t1"; gene_id "Ledus.S3G085700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5704.t1 is derived from g3143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26050328	26051464	.	+	.	Ledus.S1G312500
Ledus.S1	AUGUSTUS	transcript	26050328	26051464	.	+	.	transcript_id "Ledus.S1G312500.t1"; gene_id "Ledus.S1G312500"
Ledus.S1	AUGUSTUS	start_codon	26050328	26050330	.	+	0	transcript_id "Ledus.S1G312500.t1"; gene_id "Ledus.S1G312500"
Ledus.S1	AUGUSTUS	CDS	26050328	26051464	0.84	+	0	transcript_id "Ledus.S1G312500.t1"; gene_id "Ledus.S1G312500"
Ledus.S1	AUGUSTUS	exon	26050328	26051464	.	+	.	transcript_id "Ledus.S1G312500.t1"; gene_id "Ledus.S1G312500"
Ledus.S1	AUGUSTUS	stop_codon	26051465	26051467	.	+	0	transcript_id "Ledus.S1G312500.t1"; gene_id "Ledus.S1G312500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8308.t1 is derived from g12980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10631600	10633188	.	-	.	Ledus.S5G108600
Ledus.S5	AUGUSTUS	transcript	10631600	10633188	.	-	.	transcript_id "Ledus.S5G108600.t1"; gene_id "Ledus.S5G108600"
Ledus.S5	AUGUSTUS	stop_codon	10631597	10631599	.	-	0	transcript_id "Ledus.S5G108600.t1"; gene_id "Ledus.S5G108600"
Ledus.S5	AUGUSTUS	CDS	10631600	10632633	1	-	2	transcript_id "Ledus.S5G108600.t1"; gene_id "Ledus.S5G108600"
Ledus.S5	AUGUSTUS	exon	10631600	10632633	.	-	.	transcript_id "Ledus.S5G108600.t1"; gene_id "Ledus.S5G108600"
Ledus.S5	AUGUSTUS	intron	10632634	10632731	.	-	.	transcript_id "Ledus.S5G108600.t1"; gene_id "Ledus.S5G108600"
Ledus.S5	AUGUSTUS	CDS	10632732	10632752	0.7	-	2	transcript_id "Ledus.S5G108600.t1"; gene_id "Ledus.S5G108600"
Ledus.S5	AUGUSTUS	exon	10632732	10632752	.	-	.	transcript_id "Ledus.S5G108600.t1"; gene_id "Ledus.S5G108600"
Ledus.S5	AUGUSTUS	intron	10632753	10632827	.	-	.	transcript_id "Ledus.S5G108600.t1"; gene_id "Ledus.S5G108600"
Ledus.S5	AUGUSTUS	CDS	10632828	10633188	0.5	-	0	transcript_id "Ledus.S5G108600.t1"; gene_id "Ledus.S5G108600"
Ledus.S5	AUGUSTUS	exon	10632828	10633188	.	-	.	transcript_id "Ledus.S5G108600.t1"; gene_id "Ledus.S5G108600"
Ledus.S5	AUGUSTUS	start_codon	10633186	10633188	.	-	0	transcript_id "Ledus.S5G108600.t1"; gene_id "Ledus.S5G108600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5605.t1 is derived from g3044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25338173	25341760	.	+	.	Ledus.S1G302600
Ledus.S1	AUGUSTUS	transcript	25338173	25341760	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	start_codon	25338173	25338175	.	+	0	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	CDS	25338173	25338457	0.79	+	0	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	exon	25338173	25338457	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	intron	25338458	25338773	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	CDS	25338774	25338863	1	+	0	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	exon	25338774	25338863	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	intron	25338864	25338983	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	CDS	25338984	25339103	0.95	+	0	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	exon	25338984	25339103	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	intron	25339104	25339180	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	CDS	25339181	25339282	1	+	0	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	exon	25339181	25339282	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	intron	25339283	25339367	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	CDS	25339368	25339657	1	+	0	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	exon	25339368	25339657	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	intron	25339658	25339746	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	CDS	25339747	25339886	0.99	+	1	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	exon	25339747	25339886	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	intron	25339887	25339988	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	CDS	25339989	25340160	0.86	+	2	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	exon	25339989	25340160	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	intron	25340161	25340238	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	CDS	25340239	25340941	1	+	1	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	exon	25340239	25340941	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	intron	25340942	25341044	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	CDS	25341045	25341392	1	+	0	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	exon	25341045	25341392	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	intron	25341393	25341481	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	CDS	25341482	25341760	0.98	+	0	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	exon	25341482	25341760	.	+	.	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
Ledus.S1	AUGUSTUS	stop_codon	25341761	25341763	.	+	0	transcript_id "Ledus.S1G302600.t1"; gene_id "Ledus.S1G302600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4440.t1 is derived from g1876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17125305	17127425	.	-	.	Ledus.S1G186100
Ledus.S1	AUGUSTUS	transcript	17125305	17127425	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	stop_codon	17125302	17125304	.	-	0	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	CDS	17125305	17125558	1	-	2	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	exon	17125305	17125558	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	intron	17125559	17125649	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	CDS	17125650	17125752	1	-	0	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	exon	17125650	17125752	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	intron	17125753	17125822	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	CDS	17125823	17125914	1	-	2	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	exon	17125823	17125914	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	intron	17125915	17126013	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	CDS	17126014	17126149	1	-	0	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	exon	17126014	17126149	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	intron	17126150	17126229	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	CDS	17126230	17126475	0.99	-	0	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	exon	17126230	17126475	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	intron	17126476	17126847	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	CDS	17126848	17126881	0.72	-	1	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	exon	17126848	17126881	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	intron	17126882	17126955	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	CDS	17126956	17127425	0.6	-	0	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	exon	17126956	17127425	.	-	.	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
Ledus.S1	AUGUSTUS	start_codon	17127423	17127425	.	-	0	transcript_id "Ledus.S1G186100.t1"; gene_id "Ledus.S1G186100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8366.t1 is derived from g13038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11152985	11154874	.	+	.	Ledus.S5G114400
Ledus.S5	AUGUSTUS	transcript	11152985	11154874	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	start_codon	11152985	11152987	.	+	0	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	CDS	11152985	11153101	0.98	+	0	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	exon	11152985	11153101	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	intron	11153102	11153202	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	CDS	11153203	11153285	1	+	0	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	exon	11153203	11153285	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	intron	11153286	11153366	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	CDS	11153367	11153517	1	+	1	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	exon	11153367	11153517	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	intron	11153518	11153624	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	CDS	11153625	11153724	0.85	+	0	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	exon	11153625	11153724	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	intron	11153725	11153815	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	CDS	11153816	11153917	1	+	2	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	exon	11153816	11153917	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	intron	11153918	11154076	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	CDS	11154077	11154143	1	+	2	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	exon	11154077	11154143	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	intron	11154144	11154305	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	CDS	11154306	11154376	1	+	1	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	exon	11154306	11154376	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	intron	11154377	11154501	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	CDS	11154502	11154629	1	+	2	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	exon	11154502	11154629	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	intron	11154630	11154751	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	CDS	11154752	11154874	1	+	0	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	exon	11154752	11154874	.	+	.	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
Ledus.S5	AUGUSTUS	stop_codon	11154875	11154877	.	+	0	transcript_id "Ledus.S5G114400.t1"; gene_id "Ledus.S5G114400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1727.t1 is derived from g8588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12195636	12197091	.	+	.	Ledus.S2G160900
Ledus.S2	AUGUSTUS	transcript	12195636	12197091	.	+	.	transcript_id "Ledus.S2G160900.t1"; gene_id "Ledus.S2G160900"
Ledus.S2	AUGUSTUS	start_codon	12195636	12195638	.	+	0	transcript_id "Ledus.S2G160900.t1"; gene_id "Ledus.S2G160900"
Ledus.S2	AUGUSTUS	CDS	12195636	12196256	1	+	0	transcript_id "Ledus.S2G160900.t1"; gene_id "Ledus.S2G160900"
Ledus.S2	AUGUSTUS	exon	12195636	12196256	.	+	.	transcript_id "Ledus.S2G160900.t1"; gene_id "Ledus.S2G160900"
Ledus.S2	AUGUSTUS	intron	12196257	12196401	.	+	.	transcript_id "Ledus.S2G160900.t1"; gene_id "Ledus.S2G160900"
Ledus.S2	AUGUSTUS	CDS	12196402	12197091	1	+	0	transcript_id "Ledus.S2G160900.t1"; gene_id "Ledus.S2G160900"
Ledus.S2	AUGUSTUS	exon	12196402	12197091	.	+	.	transcript_id "Ledus.S2G160900.t1"; gene_id "Ledus.S2G160900"
Ledus.S2	AUGUSTUS	stop_codon	12197092	12197094	.	+	0	transcript_id "Ledus.S2G160900.t1"; gene_id "Ledus.S2G160900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg725.t1 is derived from g7586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4474177	4476671	.	-	.	Ledus.S2G060700
Ledus.S2	AUGUSTUS	transcript	4474177	4476671	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	stop_codon	4474174	4474176	.	-	0	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	CDS	4474177	4474443	1	-	0	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	exon	4474177	4474443	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	intron	4474444	4474570	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	CDS	4474571	4474696	1	-	0	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	exon	4474571	4474696	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	intron	4474697	4474827	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	CDS	4474828	4475055	1	-	0	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	exon	4474828	4475055	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	intron	4475056	4475153	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	CDS	4475154	4475258	1	-	0	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	exon	4475154	4475258	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	intron	4475259	4475352	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	CDS	4475353	4475733	0.99	-	0	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	exon	4475353	4475733	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	intron	4475734	4475846	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	CDS	4475847	4475899	1	-	2	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	exon	4475847	4475899	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	intron	4475900	4476085	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	CDS	4476086	4476201	1	-	1	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	exon	4476086	4476201	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	intron	4476202	4476299	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	CDS	4476300	4476397	1	-	0	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	exon	4476300	4476397	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	intron	4476398	4476482	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	CDS	4476483	4476671	0.62	-	0	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	exon	4476483	4476671	.	-	.	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
Ledus.S2	AUGUSTUS	start_codon	4476669	4476671	.	-	0	transcript_id "Ledus.S2G060700.t1"; gene_id "Ledus.S2G060700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2892.t1 is derived from g327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4421683	4424982	.	-	.	Ledus.S1G031300
Ledus.S1	AUGUSTUS	transcript	4421683	4424982	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	stop_codon	4421680	4421682	.	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4421683	4421757	0.49	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4421683	4421757	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4421758	4421854	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4421855	4421958	1	-	2	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4421855	4421958	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4421959	4422056	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4422057	4422165	1	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4422057	4422165	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4422166	4422258	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4422259	4422357	1	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4422259	4422357	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4422358	4422449	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4422450	4422584	0.97	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4422450	4422584	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4422585	4422690	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4422691	4422865	0.98	-	1	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4422691	4422865	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4422866	4422980	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4422981	4423039	1	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4422981	4423039	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4423040	4423209	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4423210	4423326	0.98	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4423210	4423326	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4423327	4423449	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4423450	4423551	0.98	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4423450	4423551	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4423552	4423736	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4423737	4423812	1	-	1	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4423737	4423812	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4423813	4423907	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4423908	4423969	1	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4423908	4423969	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4423970	4424124	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4424125	4424226	0.82	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4424125	4424226	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4424227	4424304	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4424305	4424424	1	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4424305	4424424	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4424425	4424564	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4424565	4424712	0.99	-	1	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4424565	4424712	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	intron	4424713	4424833	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	CDS	4424834	4424982	0.52	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	exon	4424834	4424982	.	-	.	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
Ledus.S1	AUGUSTUS	start_codon	4424980	4424982	.	-	0	transcript_id "Ledus.S1G031300.t1"; gene_id "Ledus.S1G031300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10484.t1 is derived from g11514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15541353	15546226	.	-	.	Ledus.S3G196100
Ledus.S3	AUGUSTUS	transcript	15541353	15546226	.	-	.	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	stop_codon	15541350	15541352	.	-	0	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	CDS	15541353	15541404	0.18	-	1	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	exon	15541353	15541404	.	-	.	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	intron	15541405	15543003	.	-	.	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	CDS	15543004	15543112	1	-	2	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	exon	15543004	15543112	.	-	.	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	intron	15543113	15543204	.	-	.	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	CDS	15543205	15543326	1	-	1	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	exon	15543205	15543326	.	-	.	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	intron	15543327	15546206	.	-	.	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	CDS	15546207	15546226	0.04	-	0	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	exon	15546207	15546226	.	-	.	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
Ledus.S3	AUGUSTUS	start_codon	15546224	15546226	.	-	0	transcript_id "Ledus.S3G196100.t1"; gene_id "Ledus.S3G196100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7339.t1 is derived from g12010.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1260516	1261088	.	+	.	Ledus.S5G011700
Ledus.S5	AUGUSTUS	transcript	1260516	1261088	.	+	.	transcript_id "Ledus.S5G011700.t1"; gene_id "Ledus.S5G011700"
Ledus.S5	AUGUSTUS	start_codon	1260516	1260518	.	+	0	transcript_id "Ledus.S5G011700.t1"; gene_id "Ledus.S5G011700"
Ledus.S5	AUGUSTUS	CDS	1260516	1260554	0.38	+	0	transcript_id "Ledus.S5G011700.t1"; gene_id "Ledus.S5G011700"
Ledus.S5	AUGUSTUS	exon	1260516	1260554	.	+	.	transcript_id "Ledus.S5G011700.t1"; gene_id "Ledus.S5G011700"
Ledus.S5	AUGUSTUS	intron	1260555	1260634	.	+	.	transcript_id "Ledus.S5G011700.t1"; gene_id "Ledus.S5G011700"
Ledus.S5	AUGUSTUS	CDS	1260635	1260817	0.57	+	0	transcript_id "Ledus.S5G011700.t1"; gene_id "Ledus.S5G011700"
Ledus.S5	AUGUSTUS	exon	1260635	1260817	.	+	.	transcript_id "Ledus.S5G011700.t1"; gene_id "Ledus.S5G011700"
Ledus.S5	AUGUSTUS	intron	1260818	1260959	.	+	.	transcript_id "Ledus.S5G011700.t1"; gene_id "Ledus.S5G011700"
Ledus.S5	AUGUSTUS	CDS	1260960	1261088	0.96	+	0	transcript_id "Ledus.S5G011700.t1"; gene_id "Ledus.S5G011700"
Ledus.S5	AUGUSTUS	exon	1260960	1261088	.	+	.	transcript_id "Ledus.S5G011700.t1"; gene_id "Ledus.S5G011700"
Ledus.S5	AUGUSTUS	stop_codon	1261089	1261091	.	+	0	transcript_id "Ledus.S5G011700.t1"; gene_id "Ledus.S5G011700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9078.t1 is derived from g10108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4394807	4396169	.	-	.	Ledus.S3G055500
Ledus.S3	AUGUSTUS	transcript	4394807	4396169	.	-	.	transcript_id "Ledus.S3G055500.t1"; gene_id "Ledus.S3G055500"
Ledus.S3	AUGUSTUS	stop_codon	4394804	4394806	.	-	0	transcript_id "Ledus.S3G055500.t1"; gene_id "Ledus.S3G055500"
Ledus.S3	AUGUSTUS	CDS	4394807	4395163	1	-	0	transcript_id "Ledus.S3G055500.t1"; gene_id "Ledus.S3G055500"
Ledus.S3	AUGUSTUS	exon	4394807	4395163	.	-	.	transcript_id "Ledus.S3G055500.t1"; gene_id "Ledus.S3G055500"
Ledus.S3	AUGUSTUS	intron	4395164	4395437	.	-	.	transcript_id "Ledus.S3G055500.t1"; gene_id "Ledus.S3G055500"
Ledus.S3	AUGUSTUS	CDS	4395438	4395591	1	-	1	transcript_id "Ledus.S3G055500.t1"; gene_id "Ledus.S3G055500"
Ledus.S3	AUGUSTUS	exon	4395438	4395591	.	-	.	transcript_id "Ledus.S3G055500.t1"; gene_id "Ledus.S3G055500"
Ledus.S3	AUGUSTUS	intron	4395592	4395687	.	-	.	transcript_id "Ledus.S3G055500.t1"; gene_id "Ledus.S3G055500"
Ledus.S3	AUGUSTUS	CDS	4395688	4396169	1	-	0	transcript_id "Ledus.S3G055500.t1"; gene_id "Ledus.S3G055500"
Ledus.S3	AUGUSTUS	exon	4395688	4396169	.	-	.	transcript_id "Ledus.S3G055500.t1"; gene_id "Ledus.S3G055500"
Ledus.S3	AUGUSTUS	start_codon	4396167	4396169	.	-	0	transcript_id "Ledus.S3G055500.t1"; gene_id "Ledus.S3G055500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3167.t1 is derived from g602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6511971	6512270	.	-	.	Ledus.S1G058800
Ledus.S1	AUGUSTUS	transcript	6511971	6512270	.	-	.	transcript_id "Ledus.S1G058800.t1"; gene_id "Ledus.S1G058800"
Ledus.S1	AUGUSTUS	stop_codon	6511968	6511970	.	-	0	transcript_id "Ledus.S1G058800.t1"; gene_id "Ledus.S1G058800"
Ledus.S1	AUGUSTUS	CDS	6511971	6512270	0.96	-	0	transcript_id "Ledus.S1G058800.t1"; gene_id "Ledus.S1G058800"
Ledus.S1	AUGUSTUS	exon	6511971	6512270	.	-	.	transcript_id "Ledus.S1G058800.t1"; gene_id "Ledus.S1G058800"
Ledus.S1	AUGUSTUS	start_codon	6512268	6512270	.	-	0	transcript_id "Ledus.S1G058800.t1"; gene_id "Ledus.S1G058800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11358.t1 is derived from g4976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3802481	3803375	.	-	.	Ledus.S4G051400
Ledus.S4	AUGUSTUS	transcript	3802481	3803375	.	-	.	transcript_id "Ledus.S4G051400.t1"; gene_id "Ledus.S4G051400"
Ledus.S4	AUGUSTUS	stop_codon	3802478	3802480	.	-	0	transcript_id "Ledus.S4G051400.t1"; gene_id "Ledus.S4G051400"
Ledus.S4	AUGUSTUS	CDS	3802481	3802664	0.6	-	1	transcript_id "Ledus.S4G051400.t1"; gene_id "Ledus.S4G051400"
Ledus.S4	AUGUSTUS	exon	3802481	3802664	.	-	.	transcript_id "Ledus.S4G051400.t1"; gene_id "Ledus.S4G051400"
Ledus.S4	AUGUSTUS	intron	3802665	3803154	.	-	.	transcript_id "Ledus.S4G051400.t1"; gene_id "Ledus.S4G051400"
Ledus.S4	AUGUSTUS	CDS	3803155	3803375	0.69	-	0	transcript_id "Ledus.S4G051400.t1"; gene_id "Ledus.S4G051400"
Ledus.S4	AUGUSTUS	exon	3803155	3803375	.	-	.	transcript_id "Ledus.S4G051400.t1"; gene_id "Ledus.S4G051400"
Ledus.S4	AUGUSTUS	start_codon	3803373	3803375	.	-	0	transcript_id "Ledus.S4G051400.t1"; gene_id "Ledus.S4G051400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11151.t1 is derived from g4769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2182677	2184391	.	-	.	Ledus.S4G030700
Ledus.S4	AUGUSTUS	transcript	2182677	2184391	.	-	.	transcript_id "Ledus.S4G030700.t1"; gene_id "Ledus.S4G030700"
Ledus.S4	AUGUSTUS	stop_codon	2182674	2182676	.	-	0	transcript_id "Ledus.S4G030700.t1"; gene_id "Ledus.S4G030700"
Ledus.S4	AUGUSTUS	CDS	2182677	2182893	0.73	-	1	transcript_id "Ledus.S4G030700.t1"; gene_id "Ledus.S4G030700"
Ledus.S4	AUGUSTUS	exon	2182677	2182893	.	-	.	transcript_id "Ledus.S4G030700.t1"; gene_id "Ledus.S4G030700"
Ledus.S4	AUGUSTUS	intron	2182894	2183227	.	-	.	transcript_id "Ledus.S4G030700.t1"; gene_id "Ledus.S4G030700"
Ledus.S4	AUGUSTUS	CDS	2183228	2183530	0.43	-	1	transcript_id "Ledus.S4G030700.t1"; gene_id "Ledus.S4G030700"
Ledus.S4	AUGUSTUS	exon	2183228	2183530	.	-	.	transcript_id "Ledus.S4G030700.t1"; gene_id "Ledus.S4G030700"
Ledus.S4	AUGUSTUS	intron	2183531	2183687	.	-	.	transcript_id "Ledus.S4G030700.t1"; gene_id "Ledus.S4G030700"
Ledus.S4	AUGUSTUS	CDS	2183688	2184391	0.5	-	0	transcript_id "Ledus.S4G030700.t1"; gene_id "Ledus.S4G030700"
Ledus.S4	AUGUSTUS	exon	2183688	2184391	.	-	.	transcript_id "Ledus.S4G030700.t1"; gene_id "Ledus.S4G030700"
Ledus.S4	AUGUSTUS	start_codon	2184389	2184391	.	-	0	transcript_id "Ledus.S4G030700.t1"; gene_id "Ledus.S4G030700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10936.t1 is derived from g4554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	701870	702976	.	-	.	Ledus.S4G009200
Ledus.S4	AUGUSTUS	transcript	701870	702976	.	-	.	transcript_id "Ledus.S4G009200.t1"; gene_id "Ledus.S4G009200"
Ledus.S4	AUGUSTUS	stop_codon	701867	701869	.	-	0	transcript_id "Ledus.S4G009200.t1"; gene_id "Ledus.S4G009200"
Ledus.S4	AUGUSTUS	CDS	701870	702976	1	-	0	transcript_id "Ledus.S4G009200.t1"; gene_id "Ledus.S4G009200"
Ledus.S4	AUGUSTUS	exon	701870	702976	.	-	.	transcript_id "Ledus.S4G009200.t1"; gene_id "Ledus.S4G009200"
Ledus.S4	AUGUSTUS	start_codon	702974	702976	.	-	0	transcript_id "Ledus.S4G009200.t1"; gene_id "Ledus.S4G009200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8548.t1 is derived from g9578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	124523	126322	.	+	.	Ledus.S3G002500
Ledus.S3	AUGUSTUS	transcript	124523	126322	.	+	.	transcript_id "Ledus.S3G002500.t1"; gene_id "Ledus.S3G002500"
Ledus.S3	AUGUSTUS	start_codon	124523	124525	.	+	0	transcript_id "Ledus.S3G002500.t1"; gene_id "Ledus.S3G002500"
Ledus.S3	AUGUSTUS	CDS	124523	126322	0.75	+	0	transcript_id "Ledus.S3G002500.t1"; gene_id "Ledus.S3G002500"
Ledus.S3	AUGUSTUS	exon	124523	126322	.	+	.	transcript_id "Ledus.S3G002500.t1"; gene_id "Ledus.S3G002500"
Ledus.S3	AUGUSTUS	stop_codon	126323	126325	.	+	0	transcript_id "Ledus.S3G002500.t1"; gene_id "Ledus.S3G002500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg2680.t1 is derived from g113.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1699055	1700764	.	+	.	Ledus.S1G010100
Ledus.S1	AUGUSTUS	transcript	1699748	1700764	.	+	.	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	start_codon	1699748	1699750	.	+	0	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1699748	1699759	1	+	0	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1699748	1699759	.	+	.	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1699760	1699913	.	+	.	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1699914	1700048	1	+	0	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1699914	1700048	.	+	.	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1700049	1700145	.	+	.	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1700146	1700162	0.82	+	0	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1700146	1700162	.	+	.	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1700163	1700252	.	+	.	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1700253	1700335	0.56	+	1	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1700253	1700335	.	+	.	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1700336	1700480	.	+	.	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1700481	1700564	0.68	+	2	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1700481	1700564	.	+	.	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1700565	1700651	.	+	.	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1700652	1700764	0.63	+	2	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1700652	1700764	.	+	.	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	stop_codon	1700765	1700767	.	+	0	transcript_id "Ledus.S1G010100.t1"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	transcript	1699055	1700764	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	start_codon	1699055	1699057	.	+	0	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1699055	1699111	0.42	+	0	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1699055	1699111	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1699112	1699191	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1699192	1699408	0.96	+	0	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1699192	1699408	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1699409	1699702	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1699703	1699759	0.92	+	2	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1699703	1699759	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1699760	1699913	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1699914	1700007	0.96	+	2	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1699914	1700007	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1700008	1700145	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1700146	1700162	0.31	+	1	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1700146	1700162	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1700163	1700257	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1700258	1700335	0.34	+	2	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1700258	1700335	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1700336	1700480	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1700481	1700564	0.69	+	2	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1700481	1700564	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1700565	1700651	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1700652	1700764	0.67	+	2	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1700652	1700764	.	+	.	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	stop_codon	1700765	1700767	.	+	0	transcript_id "Ledus.S1G010100.t2"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	transcript	1699055	1699491	.	+	.	transcript_id "Ledus.S1G010100.t3"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	start_codon	1699055	1699057	.	+	0	transcript_id "Ledus.S1G010100.t3"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1699055	1699111	0.42	+	0	transcript_id "Ledus.S1G010100.t3"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1699055	1699111	.	+	.	transcript_id "Ledus.S1G010100.t3"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	intron	1699112	1699191	.	+	.	transcript_id "Ledus.S1G010100.t3"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	CDS	1699192	1699491	0.43	+	0	transcript_id "Ledus.S1G010100.t3"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	exon	1699192	1699491	.	+	.	transcript_id "Ledus.S1G010100.t3"; gene_id "Ledus.S1G010100"
Ledus.S1	AUGUSTUS	stop_codon	1699492	1699494	.	+	0	transcript_id "Ledus.S1G010100.t3"; gene_id "Ledus.S1G010100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5412.t1 is derived from g2851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24030488	24032021	.	-	.	Ledus.S1G283300
Ledus.S1	AUGUSTUS	transcript	24030488	24032021	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	stop_codon	24030485	24030487	.	-	0	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	CDS	24030488	24030593	1	-	1	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	exon	24030488	24030593	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	intron	24030594	24030685	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	CDS	24030686	24030768	1	-	0	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	exon	24030686	24030768	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	intron	24030769	24030849	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	CDS	24030850	24030948	1	-	0	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	exon	24030850	24030948	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	intron	24030949	24031032	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	CDS	24031033	24031201	1	-	1	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	exon	24031033	24031201	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	intron	24031202	24031285	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	CDS	24031286	24031431	1	-	0	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	exon	24031286	24031431	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	intron	24031432	24031512	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	CDS	24031513	24031826	1	-	2	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	exon	24031513	24031826	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	intron	24031827	24031903	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	CDS	24031904	24032021	0.77	-	0	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	exon	24031904	24032021	.	-	.	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
Ledus.S1	AUGUSTUS	start_codon	24032019	24032021	.	-	0	transcript_id "Ledus.S1G283300.t1"; gene_id "Ledus.S1G283300"
# This transcript jg2167.t2 is derived from g9030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2168.t1 is derived from g9031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15491104	15497865	.	-	.	Ledus.S2G205000
Ledus.S2	AUGUSTUS	transcript	15491104	15497865	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	stop_codon	15491101	15491103	.	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15491104	15491201	0.97	-	2	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15491104	15491201	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15491202	15491297	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15491298	15491366	0.72	-	2	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15491298	15491366	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15491367	15491633	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15491634	15492352	0.4	-	1	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15491634	15492352	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15492353	15492477	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15492478	15492557	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15492478	15492557	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15492558	15492667	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15492668	15492743	0.77	-	1	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15492668	15492743	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15492744	15492886	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15492887	15492991	1	-	1	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15492887	15492991	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15492992	15493110	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15493111	15493268	0.99	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15493111	15493268	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15493269	15493349	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15493350	15493424	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15493350	15493424	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15493425	15493542	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15493543	15493583	0.99	-	2	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15493543	15493583	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15493584	15493700	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15493701	15493777	1	-	1	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15493701	15493777	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15493778	15493869	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15493870	15493998	0.98	-	1	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15493870	15493998	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15493999	15494100	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15494101	15494171	0.98	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15494101	15494171	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15494172	15494256	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15494257	15494352	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15494257	15494352	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15494353	15494472	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15494473	15494571	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15494473	15494571	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15494572	15495133	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15495134	15495223	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15495134	15495223	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15495224	15495334	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15495335	15495421	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15495335	15495421	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15495422	15495557	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15495558	15495635	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15495558	15495635	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15495636	15495838	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15495839	15496003	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15495839	15496003	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15496004	15496181	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15496182	15496331	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15496182	15496331	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15496332	15496433	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15496434	15496496	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15496434	15496496	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15496497	15496582	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15496583	15496702	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15496583	15496702	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15496703	15496869	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15496870	15497061	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15496870	15497061	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15497062	15497149	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15497150	15497226	1	-	2	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15497150	15497226	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15497227	15497342	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15497343	15497445	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15497343	15497445	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	intron	15497446	15497661	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	CDS	15497662	15497865	1	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	exon	15497662	15497865	.	-	.	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
Ledus.S2	AUGUSTUS	start_codon	15497863	15497865	.	-	0	transcript_id "Ledus.S2G205000.t1"; gene_id "Ledus.S2G205000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12673.t1 is derived from g6295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13818763	13820269	.	+	.	Ledus.S4G182900
Ledus.S4	AUGUSTUS	transcript	13818763	13820269	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	start_codon	13818763	13818765	.	+	0	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	CDS	13818763	13818794	0.62	+	0	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	exon	13818763	13818794	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	intron	13818795	13818893	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	CDS	13818894	13818987	0.72	+	1	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	exon	13818894	13818987	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	intron	13818988	13819110	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	CDS	13819111	13819263	0.2	+	0	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	exon	13819111	13819263	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	intron	13819264	13819364	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	CDS	13819365	13819413	0.16	+	0	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	exon	13819365	13819413	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	intron	13819414	13819530	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	CDS	13819531	13819725	0.31	+	2	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	exon	13819531	13819725	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	intron	13819726	13819838	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	CDS	13819839	13819880	0.45	+	2	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	exon	13819839	13819880	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	intron	13819881	13820072	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	CDS	13820073	13820269	0.86	+	2	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	exon	13820073	13820269	.	+	.	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
Ledus.S4	AUGUSTUS	stop_codon	13820270	13820272	.	+	0	transcript_id "Ledus.S4G182900.t1"; gene_id "Ledus.S4G182900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9349.t1 is derived from g10379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6303437	6304163	.	-	.	Ledus.S3G082600
Ledus.S3	AUGUSTUS	transcript	6303437	6304163	.	-	.	transcript_id "Ledus.S3G082600.t1"; gene_id "Ledus.S3G082600"
Ledus.S3	AUGUSTUS	stop_codon	6303434	6303436	.	-	0	transcript_id "Ledus.S3G082600.t1"; gene_id "Ledus.S3G082600"
Ledus.S3	AUGUSTUS	CDS	6303437	6303609	0.99	-	2	transcript_id "Ledus.S3G082600.t1"; gene_id "Ledus.S3G082600"
Ledus.S3	AUGUSTUS	exon	6303437	6303609	.	-	.	transcript_id "Ledus.S3G082600.t1"; gene_id "Ledus.S3G082600"
Ledus.S3	AUGUSTUS	intron	6303610	6303777	.	-	.	transcript_id "Ledus.S3G082600.t1"; gene_id "Ledus.S3G082600"
Ledus.S3	AUGUSTUS	CDS	6303778	6303896	1	-	1	transcript_id "Ledus.S3G082600.t1"; gene_id "Ledus.S3G082600"
Ledus.S3	AUGUSTUS	exon	6303778	6303896	.	-	.	transcript_id "Ledus.S3G082600.t1"; gene_id "Ledus.S3G082600"
Ledus.S3	AUGUSTUS	intron	6303897	6303972	.	-	.	transcript_id "Ledus.S3G082600.t1"; gene_id "Ledus.S3G082600"
Ledus.S3	AUGUSTUS	CDS	6303973	6304163	1	-	0	transcript_id "Ledus.S3G082600.t1"; gene_id "Ledus.S3G082600"
Ledus.S3	AUGUSTUS	exon	6303973	6304163	.	-	.	transcript_id "Ledus.S3G082600.t1"; gene_id "Ledus.S3G082600"
Ledus.S3	AUGUSTUS	start_codon	6304161	6304163	.	-	0	transcript_id "Ledus.S3G082600.t1"; gene_id "Ledus.S3G082600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6083.t1 is derived from g3526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28846427	28848295	.	-	.	Ledus.S1G350400
Ledus.S1	AUGUSTUS	transcript	28846427	28848295	.	-	.	transcript_id "Ledus.S1G350400.t1"; gene_id "Ledus.S1G350400"
Ledus.S1	AUGUSTUS	stop_codon	28846424	28846426	.	-	0	transcript_id "Ledus.S1G350400.t1"; gene_id "Ledus.S1G350400"
Ledus.S1	AUGUSTUS	CDS	28846427	28847824	0.87	-	0	transcript_id "Ledus.S1G350400.t1"; gene_id "Ledus.S1G350400"
Ledus.S1	AUGUSTUS	exon	28846427	28847824	.	-	.	transcript_id "Ledus.S1G350400.t1"; gene_id "Ledus.S1G350400"
Ledus.S1	AUGUSTUS	intron	28847825	28847944	.	-	.	transcript_id "Ledus.S1G350400.t1"; gene_id "Ledus.S1G350400"
Ledus.S1	AUGUSTUS	CDS	28847945	28848295	0.49	-	0	transcript_id "Ledus.S1G350400.t1"; gene_id "Ledus.S1G350400"
Ledus.S1	AUGUSTUS	exon	28847945	28848295	.	-	.	transcript_id "Ledus.S1G350400.t1"; gene_id "Ledus.S1G350400"
Ledus.S1	AUGUSTUS	start_codon	28848293	28848295	.	-	0	transcript_id "Ledus.S1G350400.t1"; gene_id "Ledus.S1G350400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7748.t1 is derived from g12419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6000509	6001975	.	+	.	Ledus.S5G052600
Ledus.S5	AUGUSTUS	transcript	6000509	6001975	.	+	.	transcript_id "Ledus.S5G052600.t1"; gene_id "Ledus.S5G052600"
Ledus.S5	AUGUSTUS	start_codon	6000509	6000511	.	+	0	transcript_id "Ledus.S5G052600.t1"; gene_id "Ledus.S5G052600"
Ledus.S5	AUGUSTUS	CDS	6000509	6001975	0.84	+	0	transcript_id "Ledus.S5G052600.t1"; gene_id "Ledus.S5G052600"
Ledus.S5	AUGUSTUS	exon	6000509	6001975	.	+	.	transcript_id "Ledus.S5G052600.t1"; gene_id "Ledus.S5G052600"
Ledus.S5	AUGUSTUS	stop_codon	6001976	6001978	.	+	0	transcript_id "Ledus.S5G052600.t1"; gene_id "Ledus.S5G052600"
Ledus.S5	AUGUSTUS	transcript	6001019	6001975	.	+	.	transcript_id "Ledus.S5G052600.t2"; gene_id "Ledus.S5G052600"
Ledus.S5	AUGUSTUS	start_codon	6001019	6001021	.	+	0	transcript_id "Ledus.S5G052600.t2"; gene_id "Ledus.S5G052600"
Ledus.S5	AUGUSTUS	CDS	6001019	6001975	0.69	+	0	transcript_id "Ledus.S5G052600.t2"; gene_id "Ledus.S5G052600"
Ledus.S5	AUGUSTUS	exon	6001019	6001975	.	+	.	transcript_id "Ledus.S5G052600.t2"; gene_id "Ledus.S5G052600"
Ledus.S5	AUGUSTUS	stop_codon	6001976	6001978	.	+	0	transcript_id "Ledus.S5G052600.t2"; gene_id "Ledus.S5G052600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7859.t1 is derived from g12530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7510899	7512290	.	-	.	Ledus.S5G063700
Ledus.S5	AUGUSTUS	transcript	7510899	7512290	.	-	.	transcript_id "Ledus.S5G063700.t1"; gene_id "Ledus.S5G063700"
Ledus.S5	AUGUSTUS	stop_codon	7510896	7510898	.	-	0	transcript_id "Ledus.S5G063700.t1"; gene_id "Ledus.S5G063700"
Ledus.S5	AUGUSTUS	CDS	7510899	7512290	0.99	-	0	transcript_id "Ledus.S5G063700.t1"; gene_id "Ledus.S5G063700"
Ledus.S5	AUGUSTUS	exon	7510899	7512290	.	-	.	transcript_id "Ledus.S5G063700.t1"; gene_id "Ledus.S5G063700"
Ledus.S5	AUGUSTUS	start_codon	7512288	7512290	.	-	0	transcript_id "Ledus.S5G063700.t1"; gene_id "Ledus.S5G063700"
# This transcript jg9818.t2 is derived from g10848.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9819.t1 is derived from g10849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10106027	10113089	.	-	.	Ledus.S3G129600
Ledus.S3	AUGUSTUS	transcript	10106027	10113089	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	stop_codon	10106024	10106026	.	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10106027	10106120	1	-	1	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10106027	10106120	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10106121	10106216	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10106217	10107042	0.46	-	2	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10106217	10107042	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10107043	10107209	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10107210	10107507	0.47	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10107210	10107507	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10107508	10107597	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10107598	10107814	1	-	1	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10107598	10107814	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10107815	10107911	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10107912	10108051	1	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10107912	10108051	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10108052	10108128	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10108129	10108210	1	-	1	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10108129	10108210	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10108211	10108302	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10108303	10108631	0.98	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10108303	10108631	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10108632	10108882	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10108883	10108969	1	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10108883	10108969	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10108970	10109056	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10109057	10109217	1	-	2	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10109057	10109217	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10109218	10109381	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10109382	10109523	1	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10109382	10109523	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10109524	10109676	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10109677	10109796	1	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10109677	10109796	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10109797	10109882	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10109883	10109993	1	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10109883	10109993	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10109994	10110112	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10110113	10110283	0.97	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10110113	10110283	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10110284	10110524	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10110525	10110733	1	-	2	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10110525	10110733	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10110734	10110933	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10110934	10111114	1	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10110934	10111114	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10111115	10111214	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10111215	10111352	1	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10111215	10111352	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10111353	10111503	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10111504	10111681	1	-	1	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10111504	10111681	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10111682	10111854	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10111855	10112045	1	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10111855	10112045	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10112046	10112146	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10112147	10112419	1	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10112147	10112419	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	intron	10112420	10112768	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	CDS	10112769	10113089	1	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	exon	10112769	10113089	.	-	.	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
Ledus.S3	AUGUSTUS	start_codon	10113087	10113089	.	-	0	transcript_id "Ledus.S3G129600.t1"; gene_id "Ledus.S3G129600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12504.t1 is derived from g6125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12461623	12462955	.	-	.	Ledus.S4G166000
Ledus.S4	AUGUSTUS	transcript	12461623	12462955	.	-	.	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	stop_codon	12461620	12461622	.	-	0	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	CDS	12461623	12461688	0.49	-	0	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	exon	12461623	12461688	.	-	.	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	intron	12461689	12461769	.	-	.	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	CDS	12461770	12461915	0.96	-	2	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	exon	12461770	12461915	.	-	.	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	intron	12461916	12461995	.	-	.	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	CDS	12461996	12462095	1	-	0	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	exon	12461996	12462095	.	-	.	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	intron	12462096	12462300	.	-	.	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	CDS	12462301	12462378	1	-	0	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	exon	12462301	12462378	.	-	.	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	intron	12462379	12462449	.	-	.	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	CDS	12462450	12462796	0.98	-	2	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	exon	12462450	12462796	.	-	.	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	intron	12462797	12462933	.	-	.	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	CDS	12462934	12462955	0.98	-	0	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	exon	12462934	12462955	.	-	.	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
Ledus.S4	AUGUSTUS	start_codon	12462953	12462955	.	-	0	transcript_id "Ledus.S4G166000.t1"; gene_id "Ledus.S4G166000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2706.t1 is derived from g139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2287556	2287852	.	+	.	Ledus.S1G012700
Ledus.S1	AUGUSTUS	transcript	2287556	2287852	.	+	.	transcript_id "Ledus.S1G012700.t1"; gene_id "Ledus.S1G012700"
Ledus.S1	AUGUSTUS	start_codon	2287556	2287558	.	+	0	transcript_id "Ledus.S1G012700.t1"; gene_id "Ledus.S1G012700"
Ledus.S1	AUGUSTUS	CDS	2287556	2287852	0.71	+	0	transcript_id "Ledus.S1G012700.t1"; gene_id "Ledus.S1G012700"
Ledus.S1	AUGUSTUS	exon	2287556	2287852	.	+	.	transcript_id "Ledus.S1G012700.t1"; gene_id "Ledus.S1G012700"
Ledus.S1	AUGUSTUS	stop_codon	2287853	2287855	.	+	0	transcript_id "Ledus.S1G012700.t1"; gene_id "Ledus.S1G012700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7760.t1 is derived from g12431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6112552	6113795	.	-	.	Ledus.S5G053800
Ledus.S5	AUGUSTUS	transcript	6112552	6113795	.	-	.	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	stop_codon	6112549	6112551	.	-	0	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	CDS	6112552	6112620	0.75	-	0	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	exon	6112552	6112620	.	-	.	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	intron	6112621	6112948	.	-	.	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	CDS	6112949	6113020	0.69	-	0	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	exon	6112949	6113020	.	-	.	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	intron	6113021	6113271	.	-	.	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	CDS	6113272	6113343	1	-	0	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	exon	6113272	6113343	.	-	.	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	intron	6113344	6113440	.	-	.	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	CDS	6113441	6113548	0.59	-	0	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	exon	6113441	6113548	.	-	.	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	intron	6113549	6113720	.	-	.	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	CDS	6113721	6113795	0.33	-	0	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	exon	6113721	6113795	.	-	.	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
Ledus.S5	AUGUSTUS	start_codon	6113793	6113795	.	-	0	transcript_id "Ledus.S5G053800.t1"; gene_id "Ledus.S5G053800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6185.t1 is derived from g3628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29449482	29451290	.	-	.	Ledus.S1G360600
Ledus.S1	AUGUSTUS	transcript	29449482	29451290	.	-	.	transcript_id "Ledus.S1G360600.t1"; gene_id "Ledus.S1G360600"
Ledus.S1	AUGUSTUS	stop_codon	29449479	29449481	.	-	0	transcript_id "Ledus.S1G360600.t1"; gene_id "Ledus.S1G360600"
Ledus.S1	AUGUSTUS	CDS	29449482	29450735	0.95	-	0	transcript_id "Ledus.S1G360600.t1"; gene_id "Ledus.S1G360600"
Ledus.S1	AUGUSTUS	exon	29449482	29450735	.	-	.	transcript_id "Ledus.S1G360600.t1"; gene_id "Ledus.S1G360600"
Ledus.S1	AUGUSTUS	intron	29450736	29451122	.	-	.	transcript_id "Ledus.S1G360600.t1"; gene_id "Ledus.S1G360600"
Ledus.S1	AUGUSTUS	CDS	29451123	29451290	0.93	-	0	transcript_id "Ledus.S1G360600.t1"; gene_id "Ledus.S1G360600"
Ledus.S1	AUGUSTUS	exon	29451123	29451290	.	-	.	transcript_id "Ledus.S1G360600.t1"; gene_id "Ledus.S1G360600"
Ledus.S1	AUGUSTUS	start_codon	29451288	29451290	.	-	0	transcript_id "Ledus.S1G360600.t1"; gene_id "Ledus.S1G360600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7839.t1 is derived from g12510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7400598	7402715	.	-	.	Ledus.S5G061700
Ledus.S5	AUGUSTUS	transcript	7400598	7402715	.	-	.	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	stop_codon	7400595	7400597	.	-	0	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	CDS	7400598	7401567	1	-	1	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	exon	7400598	7401567	.	-	.	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	intron	7401568	7401681	.	-	.	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	CDS	7401682	7401722	1	-	0	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	exon	7401682	7401722	.	-	.	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	intron	7401723	7401899	.	-	.	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	CDS	7401900	7402003	1	-	2	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	exon	7401900	7402003	.	-	.	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	intron	7402004	7402609	.	-	.	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	CDS	7402610	7402715	1	-	0	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	exon	7402610	7402715	.	-	.	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
Ledus.S5	AUGUSTUS	start_codon	7402713	7402715	.	-	0	transcript_id "Ledus.S5G061700.t1"; gene_id "Ledus.S5G061700"
# This transcript jg1126.t2 is derived from g7987.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1126.t3 is derived from g7987.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1126.t4 is derived from g7987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1127.t1 is derived from g7988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7749942	7753925	.	+	.	Ledus.S2G100900
Ledus.S2	AUGUSTUS	transcript	7749942	7753925	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	start_codon	7749942	7749944	.	+	0	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	CDS	7749942	7750054	0.95	+	0	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	exon	7749942	7750054	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	intron	7750055	7750176	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	CDS	7750177	7750304	1	+	1	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	exon	7750177	7750304	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	intron	7750305	7750385	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	CDS	7750386	7750448	1	+	2	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	exon	7750386	7750448	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	intron	7750449	7750559	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	CDS	7750560	7750678	1	+	2	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	exon	7750560	7750678	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	intron	7750679	7750763	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	CDS	7750764	7750879	1	+	0	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	exon	7750764	7750879	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	intron	7750880	7750951	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	CDS	7750952	7751780	1	+	1	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	exon	7750952	7751780	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	intron	7751781	7751882	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	CDS	7751883	7752599	0.86	+	0	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	exon	7751883	7752599	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	intron	7752600	7752684	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	CDS	7752685	7752906	1	+	0	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	exon	7752685	7752906	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	intron	7752907	7752990	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	CDS	7752991	7753086	1	+	0	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	exon	7752991	7753086	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	intron	7753087	7753164	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	CDS	7753165	7753359	1	+	0	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	exon	7753165	7753359	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	intron	7753360	7753465	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	CDS	7753466	7753579	1	+	0	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	exon	7753466	7753579	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	intron	7753580	7753667	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	CDS	7753668	7753925	1	+	0	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	exon	7753668	7753925	.	+	.	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
Ledus.S2	AUGUSTUS	stop_codon	7753926	7753928	.	+	0	transcript_id "Ledus.S2G100900.t1"; gene_id "Ledus.S2G100900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11092.t1 is derived from g4710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1717087	1720603	.	-	.	Ledus.S4G024800
Ledus.S4	AUGUSTUS	transcript	1717087	1720603	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	stop_codon	1717084	1717086	.	-	0	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	CDS	1717087	1717311	1	-	0	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	exon	1717087	1717311	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	intron	1717312	1717467	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	CDS	1717468	1717667	1	-	2	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	exon	1717468	1717667	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	intron	1717668	1717793	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	CDS	1717794	1717981	1	-	1	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	exon	1717794	1717981	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	intron	1717982	1718330	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	CDS	1718331	1718434	1	-	0	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	exon	1718331	1718434	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	intron	1718435	1718601	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	CDS	1718602	1718801	1	-	2	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	exon	1718602	1718801	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	intron	1718802	1718954	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	CDS	1718955	1719064	1	-	1	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	exon	1718955	1719064	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	intron	1719065	1719213	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	CDS	1719214	1719430	1	-	2	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	exon	1719214	1719430	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	intron	1719431	1719693	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	CDS	1719694	1719936	1	-	2	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	exon	1719694	1719936	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	intron	1719937	1720317	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	CDS	1720318	1720603	0.82	-	0	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	exon	1720318	1720603	.	-	.	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
Ledus.S4	AUGUSTUS	start_codon	1720601	1720603	.	-	0	transcript_id "Ledus.S4G024800.t1"; gene_id "Ledus.S4G024800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4456.t1 is derived from g1892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17178253	17180007	.	+	.	Ledus.S1G187700
Ledus.S1	AUGUSTUS	transcript	17178253	17180007	.	+	.	transcript_id "Ledus.S1G187700.t1"; gene_id "Ledus.S1G187700"
Ledus.S1	AUGUSTUS	start_codon	17178253	17178255	.	+	0	transcript_id "Ledus.S1G187700.t1"; gene_id "Ledus.S1G187700"
Ledus.S1	AUGUSTUS	CDS	17178253	17180007	0.55	+	0	transcript_id "Ledus.S1G187700.t1"; gene_id "Ledus.S1G187700"
Ledus.S1	AUGUSTUS	exon	17178253	17180007	.	+	.	transcript_id "Ledus.S1G187700.t1"; gene_id "Ledus.S1G187700"
Ledus.S1	AUGUSTUS	stop_codon	17180008	17180010	.	+	0	transcript_id "Ledus.S1G187700.t1"; gene_id "Ledus.S1G187700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5132.t1 is derived from g2571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21885394	21886386	.	-	.	Ledus.S1G255300
Ledus.S1	AUGUSTUS	transcript	21885394	21886386	.	-	.	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	stop_codon	21885391	21885393	.	-	0	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	CDS	21885394	21885438	1	-	0	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	exon	21885394	21885438	.	-	.	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	intron	21885439	21885537	.	-	.	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	CDS	21885538	21885822	1	-	0	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	exon	21885538	21885822	.	-	.	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	intron	21885823	21885917	.	-	.	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	CDS	21885918	21886054	1	-	2	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	exon	21885918	21886054	.	-	.	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	intron	21886055	21886139	.	-	.	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	CDS	21886140	21886386	0.99	-	0	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	exon	21886140	21886386	.	-	.	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	start_codon	21886384	21886386	.	-	0	transcript_id "Ledus.S1G255300.t1"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	transcript	21885394	21886386	.	-	.	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	stop_codon	21885391	21885393	.	-	0	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	CDS	21885394	21885441	1	-	0	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	exon	21885394	21885441	.	-	.	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	intron	21885442	21885537	.	-	.	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	CDS	21885538	21885822	1	-	0	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	exon	21885538	21885822	.	-	.	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	intron	21885823	21885917	.	-	.	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	CDS	21885918	21886054	1	-	2	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	exon	21885918	21886054	.	-	.	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	intron	21886055	21886139	.	-	.	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	CDS	21886140	21886386	0.98	-	0	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	exon	21886140	21886386	.	-	.	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
Ledus.S1	AUGUSTUS	start_codon	21886384	21886386	.	-	0	transcript_id "Ledus.S1G255300.t2"; gene_id "Ledus.S1G255300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8264.t1 is derived from g12935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10284977	10288432	.	-	.	Ledus.S5G104200
Ledus.S5	AUGUSTUS	transcript	10284977	10288432	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	stop_codon	10284974	10284976	.	-	0	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10284977	10285063	0.89	-	0	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10284977	10285063	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10285064	10285189	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10285190	10285264	1	-	0	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10285190	10285264	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10285265	10285357	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10285358	10285393	1	-	0	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10285358	10285393	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10285394	10285619	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10285620	10285667	1	-	0	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10285620	10285667	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10285668	10285857	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10285858	10285923	1	-	0	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10285858	10285923	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10285924	10286017	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10286018	10286066	1	-	1	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10286018	10286066	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10286067	10286220	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10286221	10286283	1	-	1	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10286221	10286283	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10286284	10286466	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10286467	10286550	1	-	1	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10286467	10286550	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10286551	10286732	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10286733	10286849	1	-	1	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10286733	10286849	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10286850	10287108	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10287109	10287149	0.92	-	0	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10287109	10287149	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10287150	10287261	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10287262	10287340	1	-	1	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10287262	10287340	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10287341	10287473	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10287474	10287630	0.98	-	2	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10287474	10287630	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10287631	10287741	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10287742	10287874	0.98	-	0	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10287742	10287874	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10287875	10288015	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10288016	10288140	1	-	2	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10288016	10288140	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	intron	10288141	10288272	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	CDS	10288273	10288432	1	-	0	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	exon	10288273	10288432	.	-	.	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
Ledus.S5	AUGUSTUS	start_codon	10288430	10288432	.	-	0	transcript_id "Ledus.S5G104200.t1"; gene_id "Ledus.S5G104200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8784.t1 is derived from g9814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1959162	1963220	.	+	.	Ledus.S3G026100
Ledus.S3	AUGUSTUS	transcript	1959162	1963220	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	start_codon	1959162	1959164	.	+	0	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	CDS	1959162	1959461	0.86	+	0	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	exon	1959162	1959461	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	intron	1959462	1959618	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	CDS	1959619	1959837	1	+	0	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	exon	1959619	1959837	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	intron	1959838	1959922	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	CDS	1959923	1960160	1	+	0	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	exon	1959923	1960160	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	intron	1960161	1960264	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	CDS	1960265	1960460	0.79	+	2	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	exon	1960265	1960460	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	intron	1960461	1960563	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	CDS	1960564	1960618	1	+	1	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	exon	1960564	1960618	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	intron	1960619	1960744	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	CDS	1960745	1960895	0.96	+	0	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	exon	1960745	1960895	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	intron	1960896	1960996	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	CDS	1960997	1961305	1	+	2	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	exon	1960997	1961305	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	intron	1961306	1961402	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	CDS	1961403	1961668	1	+	2	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	exon	1961403	1961668	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	intron	1961669	1961819	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	CDS	1961820	1962740	1	+	0	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	exon	1961820	1962740	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	intron	1962741	1962872	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	CDS	1962873	1963220	1	+	0	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	exon	1962873	1963220	.	+	.	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
Ledus.S3	AUGUSTUS	stop_codon	1963221	1963223	.	+	0	transcript_id "Ledus.S3G026100.t1"; gene_id "Ledus.S3G026100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6334.t1 is derived from g3777.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30566717	30567805	.	+	.	Ledus.S1G375500
Ledus.S1	AUGUSTUS	transcript	30566717	30567805	.	+	.	transcript_id "Ledus.S1G375500.t1"; gene_id "Ledus.S1G375500"
Ledus.S1	AUGUSTUS	start_codon	30566717	30566719	.	+	0	transcript_id "Ledus.S1G375500.t1"; gene_id "Ledus.S1G375500"
Ledus.S1	AUGUSTUS	CDS	30566717	30567805	1	+	0	transcript_id "Ledus.S1G375500.t1"; gene_id "Ledus.S1G375500"
Ledus.S1	AUGUSTUS	exon	30566717	30567805	.	+	.	transcript_id "Ledus.S1G375500.t1"; gene_id "Ledus.S1G375500"
Ledus.S1	AUGUSTUS	stop_codon	30567806	30567808	.	+	0	transcript_id "Ledus.S1G375500.t1"; gene_id "Ledus.S1G375500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4206.t1 is derived from g1642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15369043	15372305	.	+	.	Ledus.S1G162700
Ledus.S1	AUGUSTUS	transcript	15369043	15372305	.	+	.	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	start_codon	15369043	15369045	.	+	0	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	CDS	15369043	15370035	0.96	+	0	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	exon	15369043	15370035	.	+	.	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	intron	15370036	15370132	.	+	.	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	CDS	15370133	15370318	1	+	0	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	exon	15370133	15370318	.	+	.	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	intron	15370319	15370517	.	+	.	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	CDS	15370518	15370978	0.97	+	0	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	exon	15370518	15370978	.	+	.	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	intron	15370979	15371083	.	+	.	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	CDS	15371084	15371242	1	+	1	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	exon	15371084	15371242	.	+	.	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	intron	15371243	15371365	.	+	.	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	CDS	15371366	15371726	1	+	1	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	exon	15371366	15371726	.	+	.	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	intron	15371727	15371900	.	+	.	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	CDS	15371901	15372305	0.98	+	0	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	exon	15371901	15372305	.	+	.	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
Ledus.S1	AUGUSTUS	stop_codon	15372306	15372308	.	+	0	transcript_id "Ledus.S1G162700.t1"; gene_id "Ledus.S1G162700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9125.t1 is derived from g10155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4702601	4703422	.	+	.	Ledus.S3G060200
Ledus.S3	AUGUSTUS	transcript	4702601	4703422	.	+	.	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	start_codon	4702601	4702603	.	+	0	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	CDS	4702601	4702624	1	+	0	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	exon	4702601	4702624	.	+	.	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	intron	4702625	4702699	.	+	.	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	CDS	4702700	4702859	1	+	0	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	exon	4702700	4702859	.	+	.	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	intron	4702860	4702972	.	+	.	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	CDS	4702973	4702979	1	+	2	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	exon	4702973	4702979	.	+	.	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	intron	4702980	4703098	.	+	.	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	CDS	4703099	4703183	1	+	1	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	exon	4703099	4703183	.	+	.	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	intron	4703184	4703311	.	+	.	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	CDS	4703312	4703422	0.97	+	0	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	exon	4703312	4703422	.	+	.	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
Ledus.S3	AUGUSTUS	stop_codon	4703423	4703425	.	+	0	transcript_id "Ledus.S3G060200.t1"; gene_id "Ledus.S3G060200"
# This transcript jg10758.t2 is derived from g11789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10759.t1 is derived from g11791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17516095	17516490	.	+	.	Ledus.S3G223600
Ledus.S3	AUGUSTUS	transcript	17516095	17516490	.	+	.	transcript_id "Ledus.S3G223600.t1"; gene_id "Ledus.S3G223600"
Ledus.S3	AUGUSTUS	start_codon	17516095	17516097	.	+	0	transcript_id "Ledus.S3G223600.t1"; gene_id "Ledus.S3G223600"
Ledus.S3	AUGUSTUS	CDS	17516095	17516490	0.53	+	0	transcript_id "Ledus.S3G223600.t1"; gene_id "Ledus.S3G223600"
Ledus.S3	AUGUSTUS	exon	17516095	17516490	.	+	.	transcript_id "Ledus.S3G223600.t1"; gene_id "Ledus.S3G223600"
Ledus.S3	AUGUSTUS	stop_codon	17516491	17516493	.	+	0	transcript_id "Ledus.S3G223600.t1"; gene_id "Ledus.S3G223600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10365.t1 is derived from g11395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14448393	14448731	.	-	.	Ledus.S3G184200
Ledus.S3	AUGUSTUS	transcript	14448393	14448731	.	-	.	transcript_id "Ledus.S3G184200.t1"; gene_id "Ledus.S3G184200"
Ledus.S3	AUGUSTUS	stop_codon	14448390	14448392	.	-	0	transcript_id "Ledus.S3G184200.t1"; gene_id "Ledus.S3G184200"
Ledus.S3	AUGUSTUS	CDS	14448393	14448431	0.17	-	0	transcript_id "Ledus.S3G184200.t1"; gene_id "Ledus.S3G184200"
Ledus.S3	AUGUSTUS	exon	14448393	14448431	.	-	.	transcript_id "Ledus.S3G184200.t1"; gene_id "Ledus.S3G184200"
Ledus.S3	AUGUSTUS	intron	14448432	14448515	.	-	.	transcript_id "Ledus.S3G184200.t1"; gene_id "Ledus.S3G184200"
Ledus.S3	AUGUSTUS	CDS	14448516	14448731	0.32	-	0	transcript_id "Ledus.S3G184200.t1"; gene_id "Ledus.S3G184200"
Ledus.S3	AUGUSTUS	exon	14448516	14448731	.	-	.	transcript_id "Ledus.S3G184200.t1"; gene_id "Ledus.S3G184200"
Ledus.S3	AUGUSTUS	start_codon	14448729	14448731	.	-	0	transcript_id "Ledus.S3G184200.t1"; gene_id "Ledus.S3G184200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2663.t1 is derived from g96.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1446309	1448263	.	+	.	Ledus.S1G008400
Ledus.S1	AUGUSTUS	transcript	1446309	1448263	.	+	.	transcript_id "Ledus.S1G008400.t1"; gene_id "Ledus.S1G008400"
Ledus.S1	AUGUSTUS	start_codon	1446309	1446311	.	+	0	transcript_id "Ledus.S1G008400.t1"; gene_id "Ledus.S1G008400"
Ledus.S1	AUGUSTUS	CDS	1446309	1446318	1	+	0	transcript_id "Ledus.S1G008400.t1"; gene_id "Ledus.S1G008400"
Ledus.S1	AUGUSTUS	exon	1446309	1446318	.	+	.	transcript_id "Ledus.S1G008400.t1"; gene_id "Ledus.S1G008400"
Ledus.S1	AUGUSTUS	intron	1446319	1446410	.	+	.	transcript_id "Ledus.S1G008400.t1"; gene_id "Ledus.S1G008400"
Ledus.S1	AUGUSTUS	CDS	1446411	1446472	1	+	2	transcript_id "Ledus.S1G008400.t1"; gene_id "Ledus.S1G008400"
Ledus.S1	AUGUSTUS	exon	1446411	1446472	.	+	.	transcript_id "Ledus.S1G008400.t1"; gene_id "Ledus.S1G008400"
Ledus.S1	AUGUSTUS	intron	1446473	1446565	.	+	.	transcript_id "Ledus.S1G008400.t1"; gene_id "Ledus.S1G008400"
Ledus.S1	AUGUSTUS	CDS	1446566	1448263	0.99	+	0	transcript_id "Ledus.S1G008400.t1"; gene_id "Ledus.S1G008400"
Ledus.S1	AUGUSTUS	exon	1446566	1448263	.	+	.	transcript_id "Ledus.S1G008400.t1"; gene_id "Ledus.S1G008400"
Ledus.S1	AUGUSTUS	stop_codon	1448264	1448266	.	+	0	transcript_id "Ledus.S1G008400.t1"; gene_id "Ledus.S1G008400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9750.t1 is derived from g10780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9571048	9573507	.	-	.	Ledus.S3G122700
Ledus.S3	AUGUSTUS	transcript	9571048	9573507	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	stop_codon	9571045	9571047	.	-	0	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	CDS	9571048	9571200	0.88	-	0	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	exon	9571048	9571200	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	intron	9571201	9571313	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	CDS	9571314	9571401	0.88	-	1	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	exon	9571314	9571401	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	intron	9571402	9571490	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	CDS	9571491	9571558	1	-	0	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	exon	9571491	9571558	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	intron	9571559	9571737	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	CDS	9571738	9571859	1	-	2	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	exon	9571738	9571859	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	intron	9571860	9572040	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	CDS	9572041	9572086	1	-	0	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	exon	9572041	9572086	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	intron	9572087	9572238	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	CDS	9572239	9572315	1	-	2	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	exon	9572239	9572315	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	intron	9572316	9572420	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	CDS	9572421	9572476	0.89	-	1	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	exon	9572421	9572476	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	intron	9572477	9572772	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	CDS	9572773	9572918	1	-	0	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	exon	9572773	9572918	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	intron	9572919	9573036	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	CDS	9573037	9573095	1	-	2	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	exon	9573037	9573095	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	intron	9573096	9573181	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	CDS	9573182	9573260	1	-	0	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	exon	9573182	9573260	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	intron	9573261	9573345	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	CDS	9573346	9573507	0.9	-	0	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	exon	9573346	9573507	.	-	.	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
Ledus.S3	AUGUSTUS	start_codon	9573505	9573507	.	-	0	transcript_id "Ledus.S3G122700.t1"; gene_id "Ledus.S3G122700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2638.t1 is derived from g71.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1059126	1062910	.	+	.	Ledus.S1G005900
Ledus.S1	AUGUSTUS	transcript	1059126	1062910	.	+	.	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	start_codon	1059126	1059128	.	+	0	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	CDS	1059126	1059618	0.49	+	0	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	exon	1059126	1059618	.	+	.	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	intron	1059619	1061240	.	+	.	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	CDS	1061241	1061347	1	+	2	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	exon	1061241	1061347	.	+	.	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	intron	1061348	1061580	.	+	.	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	CDS	1061581	1061701	1	+	0	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	exon	1061581	1061701	.	+	.	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	intron	1061702	1061838	.	+	.	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	CDS	1061839	1062187	0.85	+	2	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	exon	1061839	1062187	.	+	.	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	intron	1062188	1062276	.	+	.	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	CDS	1062277	1062910	0.98	+	1	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	exon	1062277	1062910	.	+	.	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
Ledus.S1	AUGUSTUS	stop_codon	1062911	1062913	.	+	0	transcript_id "Ledus.S1G005900.t1"; gene_id "Ledus.S1G005900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg953.t1 is derived from g7814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6287223	6288158	.	+	.	Ledus.S2G083500
Ledus.S2	AUGUSTUS	transcript	6287223	6288158	.	+	.	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	start_codon	6287223	6287225	.	+	0	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	CDS	6287223	6287449	0.93	+	0	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	exon	6287223	6287449	.	+	.	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	intron	6287450	6287536	.	+	.	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	CDS	6287537	6287673	1	+	1	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	exon	6287537	6287673	.	+	.	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	intron	6287674	6287751	.	+	.	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	CDS	6287752	6287888	1	+	2	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	exon	6287752	6287888	.	+	.	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	intron	6287889	6287984	.	+	.	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	CDS	6287985	6288158	1	+	0	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	exon	6287985	6288158	.	+	.	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
Ledus.S2	AUGUSTUS	stop_codon	6288159	6288161	.	+	0	transcript_id "Ledus.S2G083500.t1"; gene_id "Ledus.S2G083500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13149.t1 is derived from g6959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7398151	7399197	.	+	.	Ledus.S6G021100
Ledus.S6	AUGUSTUS	transcript	7398151	7399197	.	+	.	transcript_id "Ledus.S6G021100.t1"; gene_id "Ledus.S6G021100"
Ledus.S6	AUGUSTUS	start_codon	7398151	7398153	.	+	0	transcript_id "Ledus.S6G021100.t1"; gene_id "Ledus.S6G021100"
Ledus.S6	AUGUSTUS	CDS	7398151	7399197	0.71	+	0	transcript_id "Ledus.S6G021100.t1"; gene_id "Ledus.S6G021100"
Ledus.S6	AUGUSTUS	exon	7398151	7399197	.	+	.	transcript_id "Ledus.S6G021100.t1"; gene_id "Ledus.S6G021100"
Ledus.S6	AUGUSTUS	stop_codon	7399198	7399200	.	+	0	transcript_id "Ledus.S6G021100.t1"; gene_id "Ledus.S6G021100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3857.t1 is derived from g1293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13198722	13200545	.	-	.	Ledus.S1G127800
Ledus.S1	AUGUSTUS	transcript	13198722	13200545	.	-	.	transcript_id "Ledus.S1G127800.t1"; gene_id "Ledus.S1G127800"
Ledus.S1	AUGUSTUS	stop_codon	13198719	13198721	.	-	0	transcript_id "Ledus.S1G127800.t1"; gene_id "Ledus.S1G127800"
Ledus.S1	AUGUSTUS	CDS	13198722	13199115	1	-	1	transcript_id "Ledus.S1G127800.t1"; gene_id "Ledus.S1G127800"
Ledus.S1	AUGUSTUS	exon	13198722	13199115	.	-	.	transcript_id "Ledus.S1G127800.t1"; gene_id "Ledus.S1G127800"
Ledus.S1	AUGUSTUS	intron	13199116	13199210	.	-	.	transcript_id "Ledus.S1G127800.t1"; gene_id "Ledus.S1G127800"
Ledus.S1	AUGUSTUS	CDS	13199211	13200296	1	-	1	transcript_id "Ledus.S1G127800.t1"; gene_id "Ledus.S1G127800"
Ledus.S1	AUGUSTUS	exon	13199211	13200296	.	-	.	transcript_id "Ledus.S1G127800.t1"; gene_id "Ledus.S1G127800"
Ledus.S1	AUGUSTUS	intron	13200297	13200384	.	-	.	transcript_id "Ledus.S1G127800.t1"; gene_id "Ledus.S1G127800"
Ledus.S1	AUGUSTUS	CDS	13200385	13200545	0.98	-	0	transcript_id "Ledus.S1G127800.t1"; gene_id "Ledus.S1G127800"
Ledus.S1	AUGUSTUS	exon	13200385	13200545	.	-	.	transcript_id "Ledus.S1G127800.t1"; gene_id "Ledus.S1G127800"
Ledus.S1	AUGUSTUS	start_codon	13200543	13200545	.	-	0	transcript_id "Ledus.S1G127800.t1"; gene_id "Ledus.S1G127800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10441.t1 is derived from g11471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15189553	15192257	.	+	.	Ledus.S3G191800
Ledus.S3	AUGUSTUS	transcript	15189553	15192257	.	+	.	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	start_codon	15189553	15189555	.	+	0	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	CDS	15189553	15189693	1	+	0	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	exon	15189553	15189693	.	+	.	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	intron	15189694	15189910	.	+	.	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	CDS	15189911	15189956	1	+	0	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	exon	15189911	15189956	.	+	.	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	intron	15189957	15190172	.	+	.	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	CDS	15190173	15190231	1	+	2	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	exon	15190173	15190231	.	+	.	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	intron	15190232	15190419	.	+	.	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	CDS	15190420	15191455	0.66	+	0	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	exon	15190420	15191455	.	+	.	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	intron	15191456	15191595	.	+	.	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	CDS	15191596	15192257	0.6	+	2	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	exon	15191596	15192257	.	+	.	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
Ledus.S3	AUGUSTUS	stop_codon	15192258	15192260	.	+	0	transcript_id "Ledus.S3G191800.t1"; gene_id "Ledus.S3G191800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12830.t1 is derived from g9531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C16	AUGUSTUS	gene	32143	32572	.	+	.	Ledus.C16G000100
Ledus.C16	AUGUSTUS	transcript	32143	32572	.	+	.	transcript_id "Ledus.C16G000100.t1"; gene_id "Ledus.C16G000100"
Ledus.C16	AUGUSTUS	start_codon	32143	32145	.	+	0	transcript_id "Ledus.C16G000100.t1"; gene_id "Ledus.C16G000100"
Ledus.C16	AUGUSTUS	CDS	32143	32252	0.96	+	0	transcript_id "Ledus.C16G000100.t1"; gene_id "Ledus.C16G000100"
Ledus.C16	AUGUSTUS	exon	32143	32252	.	+	.	transcript_id "Ledus.C16G000100.t1"; gene_id "Ledus.C16G000100"
Ledus.C16	AUGUSTUS	intron	32253	32344	.	+	.	transcript_id "Ledus.C16G000100.t1"; gene_id "Ledus.C16G000100"
Ledus.C16	AUGUSTUS	CDS	32345	32485	1	+	1	transcript_id "Ledus.C16G000100.t1"; gene_id "Ledus.C16G000100"
Ledus.C16	AUGUSTUS	exon	32345	32485	.	+	.	transcript_id "Ledus.C16G000100.t1"; gene_id "Ledus.C16G000100"
Ledus.C16	AUGUSTUS	intron	32486	32571	.	+	.	transcript_id "Ledus.C16G000100.t1"; gene_id "Ledus.C16G000100"
Ledus.C16	AUGUSTUS	CDS	32572	32572	1	+	1	transcript_id "Ledus.C16G000100.t1"; gene_id "Ledus.C16G000100"
Ledus.C16	AUGUSTUS	exon	32572	32572	.	+	.	transcript_id "Ledus.C16G000100.t1"; gene_id "Ledus.C16G000100"
Ledus.C16	AUGUSTUS	stop_codon	32573	32575	.	+	0	transcript_id "Ledus.C16G000100.t1"; gene_id "Ledus.C16G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg381.t1 is derived from g7242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2039428	2040564	.	+	.	Ledus.S2G026300
Ledus.S2	AUGUSTUS	transcript	2039428	2040564	.	+	.	transcript_id "Ledus.S2G026300.t1"; gene_id "Ledus.S2G026300"
Ledus.S2	AUGUSTUS	start_codon	2039428	2039430	.	+	0	transcript_id "Ledus.S2G026300.t1"; gene_id "Ledus.S2G026300"
Ledus.S2	AUGUSTUS	CDS	2039428	2040564	0.54	+	0	transcript_id "Ledus.S2G026300.t1"; gene_id "Ledus.S2G026300"
Ledus.S2	AUGUSTUS	exon	2039428	2040564	.	+	.	transcript_id "Ledus.S2G026300.t1"; gene_id "Ledus.S2G026300"
Ledus.S2	AUGUSTUS	stop_codon	2040565	2040567	.	+	0	transcript_id "Ledus.S2G026300.t1"; gene_id "Ledus.S2G026300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg174.t1 is derived from g7035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	534214	536494	.	-	.	Ledus.S2G005600
Ledus.S2	AUGUSTUS	transcript	534214	536494	.	-	.	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	stop_codon	534211	534213	.	-	0	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	CDS	534214	535262	0.98	-	2	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	exon	534214	535262	.	-	.	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	intron	535263	535383	.	-	.	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	CDS	535384	535618	1	-	0	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	exon	535384	535618	.	-	.	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	intron	535619	535748	.	-	.	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	CDS	535749	535959	1	-	1	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	exon	535749	535959	.	-	.	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	intron	535960	536070	.	-	.	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	CDS	536071	536144	1	-	0	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	exon	536071	536144	.	-	.	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	intron	536145	536287	.	-	.	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	CDS	536288	536494	0.69	-	0	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	exon	536288	536494	.	-	.	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
Ledus.S2	AUGUSTUS	start_codon	536492	536494	.	-	0	transcript_id "Ledus.S2G005600.t1"; gene_id "Ledus.S2G005600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9215.t1 is derived from g10245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5442178	5442759	.	+	.	Ledus.S3G069200
Ledus.S3	AUGUSTUS	transcript	5442178	5442759	.	+	.	transcript_id "Ledus.S3G069200.t1"; gene_id "Ledus.S3G069200"
Ledus.S3	AUGUSTUS	start_codon	5442178	5442180	.	+	0	transcript_id "Ledus.S3G069200.t1"; gene_id "Ledus.S3G069200"
Ledus.S3	AUGUSTUS	CDS	5442178	5442759	0.52	+	0	transcript_id "Ledus.S3G069200.t1"; gene_id "Ledus.S3G069200"
Ledus.S3	AUGUSTUS	exon	5442178	5442759	.	+	.	transcript_id "Ledus.S3G069200.t1"; gene_id "Ledus.S3G069200"
Ledus.S3	AUGUSTUS	stop_codon	5442760	5442762	.	+	0	transcript_id "Ledus.S3G069200.t1"; gene_id "Ledus.S3G069200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8670.t1 is derived from g9700.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1294901	1299013	.	-	.	Ledus.S3G014700
Ledus.S3	AUGUSTUS	transcript	1294901	1299013	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	stop_codon	1294898	1294900	.	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1294901	1295023	0.9	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1294901	1295023	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1295024	1295107	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1295108	1295137	1	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1295108	1295137	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1295138	1295225	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1295226	1295297	1	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1295226	1295297	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1295298	1295390	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1295391	1295450	1	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1295391	1295450	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1295451	1295537	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1295538	1295603	1	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1295538	1295603	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1295604	1295698	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1295699	1295836	0.55	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1295699	1295836	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1295837	1295931	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1295932	1295989	1	-	1	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1295932	1295989	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1295990	1296171	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1296172	1296221	1	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1296172	1296221	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1296222	1296348	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1296349	1296423	0.98	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1296349	1296423	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1296424	1296506	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1296507	1296593	0.98	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1296507	1296593	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1296594	1296736	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1296737	1296786	0.85	-	2	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1296737	1296786	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1296787	1296954	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1296955	1297021	0.89	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1296955	1297021	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1297022	1297122	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1297123	1297191	1	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1297123	1297191	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1297192	1297400	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1297401	1297509	1	-	1	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1297401	1297509	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1297510	1297641	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1297642	1297691	0.59	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1297642	1297691	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1297692	1297803	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1297804	1297893	0.59	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1297804	1297893	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1297894	1298027	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1298028	1298120	1	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1298028	1298120	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1298121	1298209	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1298210	1298290	1	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1298210	1298290	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1298291	1298383	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1298384	1298491	0.87	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1298384	1298491	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1298492	1298562	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1298563	1298643	0.86	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1298563	1298643	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1298644	1298721	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1298722	1298821	0.99	-	1	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1298722	1298821	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1298822	1298924	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1298925	1299013	0.52	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1298925	1299013	.	-	.	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	start_codon	1299011	1299013	.	-	0	transcript_id "Ledus.S3G014700.t1"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	transcript	1296753	1299013	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	stop_codon	1296750	1296752	.	-	0	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1296753	1296786	0.41	-	1	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1296753	1296786	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1296787	1296954	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1296955	1297021	0.54	-	2	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1296955	1297021	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1297022	1297122	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1297123	1297168	0.54	-	0	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1297123	1297168	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1297169	1297400	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1297401	1297509	0.99	-	1	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1297401	1297509	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1297510	1297641	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1297642	1297691	0.49	-	0	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1297642	1297691	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1297692	1297803	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1297804	1297893	0.51	-	0	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1297804	1297893	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1297894	1298027	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1298028	1298120	1	-	0	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1298028	1298120	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1298121	1298209	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1298210	1298290	1	-	0	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1298210	1298290	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1298291	1298383	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1298384	1298491	0.85	-	0	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1298384	1298491	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1298492	1298562	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1298563	1298643	0.84	-	0	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1298563	1298643	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1298644	1298721	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1298722	1298821	0.99	-	1	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1298722	1298821	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	intron	1298822	1298924	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	CDS	1298925	1299013	0.63	-	0	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	exon	1298925	1299013	.	-	.	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
Ledus.S3	AUGUSTUS	start_codon	1299011	1299013	.	-	0	transcript_id "Ledus.S3G014700.t2"; gene_id "Ledus.S3G014700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7502.t1 is derived from g12173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3489328	3489798	.	-	.	Ledus.S5G028000
Ledus.S5	AUGUSTUS	transcript	3489328	3489798	.	-	.	transcript_id "Ledus.S5G028000.t1"; gene_id "Ledus.S5G028000"
Ledus.S5	AUGUSTUS	stop_codon	3489325	3489327	.	-	0	transcript_id "Ledus.S5G028000.t1"; gene_id "Ledus.S5G028000"
Ledus.S5	AUGUSTUS	CDS	3489328	3489798	0.78	-	0	transcript_id "Ledus.S5G028000.t1"; gene_id "Ledus.S5G028000"
Ledus.S5	AUGUSTUS	exon	3489328	3489798	.	-	.	transcript_id "Ledus.S5G028000.t1"; gene_id "Ledus.S5G028000"
Ledus.S5	AUGUSTUS	start_codon	3489796	3489798	.	-	0	transcript_id "Ledus.S5G028000.t1"; gene_id "Ledus.S5G028000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4583.t1 is derived from g2020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17906164	17906485	.	+	.	Ledus.S1G200400
Ledus.S1	AUGUSTUS	transcript	17906164	17906485	.	+	.	transcript_id "Ledus.S1G200400.t1"; gene_id "Ledus.S1G200400"
Ledus.S1	AUGUSTUS	start_codon	17906164	17906166	.	+	0	transcript_id "Ledus.S1G200400.t1"; gene_id "Ledus.S1G200400"
Ledus.S1	AUGUSTUS	CDS	17906164	17906297	0.89	+	0	transcript_id "Ledus.S1G200400.t1"; gene_id "Ledus.S1G200400"
Ledus.S1	AUGUSTUS	exon	17906164	17906297	.	+	.	transcript_id "Ledus.S1G200400.t1"; gene_id "Ledus.S1G200400"
Ledus.S1	AUGUSTUS	intron	17906298	17906394	.	+	.	transcript_id "Ledus.S1G200400.t1"; gene_id "Ledus.S1G200400"
Ledus.S1	AUGUSTUS	CDS	17906395	17906485	1	+	1	transcript_id "Ledus.S1G200400.t1"; gene_id "Ledus.S1G200400"
Ledus.S1	AUGUSTUS	exon	17906395	17906485	.	+	.	transcript_id "Ledus.S1G200400.t1"; gene_id "Ledus.S1G200400"
Ledus.S1	AUGUSTUS	stop_codon	17906486	17906488	.	+	0	transcript_id "Ledus.S1G200400.t1"; gene_id "Ledus.S1G200400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4294.t1 is derived from g1730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16085104	16086357	.	-	.	Ledus.S1G171500
Ledus.S1	AUGUSTUS	transcript	16085104	16086357	.	-	.	transcript_id "Ledus.S1G171500.t1"; gene_id "Ledus.S1G171500"
Ledus.S1	AUGUSTUS	stop_codon	16085101	16085103	.	-	0	transcript_id "Ledus.S1G171500.t1"; gene_id "Ledus.S1G171500"
Ledus.S1	AUGUSTUS	CDS	16085104	16086357	0.81	-	0	transcript_id "Ledus.S1G171500.t1"; gene_id "Ledus.S1G171500"
Ledus.S1	AUGUSTUS	exon	16085104	16086357	.	-	.	transcript_id "Ledus.S1G171500.t1"; gene_id "Ledus.S1G171500"
Ledus.S1	AUGUSTUS	start_codon	16086355	16086357	.	-	0	transcript_id "Ledus.S1G171500.t1"; gene_id "Ledus.S1G171500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3319.t1 is derived from g754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7446191	7449927	.	-	.	Ledus.S1G074000
Ledus.S1	AUGUSTUS	transcript	7446191	7449927	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	stop_codon	7446188	7446190	.	-	0	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	CDS	7446191	7446319	1	-	0	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	exon	7446191	7446319	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	intron	7446320	7446413	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	CDS	7446414	7446543	1	-	1	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	exon	7446414	7446543	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	intron	7446544	7446617	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	CDS	7446618	7446813	1	-	2	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	exon	7446618	7446813	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	intron	7446814	7446990	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	CDS	7446991	7447141	1	-	0	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	exon	7446991	7447141	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	intron	7447142	7447296	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	CDS	7447297	7447482	1	-	0	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	exon	7447297	7447482	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	intron	7447483	7447646	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	CDS	7447647	7447856	1	-	0	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	exon	7447647	7447856	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	intron	7447857	7448167	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	CDS	7448168	7448347	1	-	0	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	exon	7448168	7448347	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	intron	7448348	7448422	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	CDS	7448423	7448546	1	-	1	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	exon	7448423	7448546	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	intron	7448547	7448635	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	CDS	7448636	7449175	1	-	1	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	exon	7448636	7449175	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	intron	7449176	7449328	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	CDS	7449329	7449927	0.73	-	0	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	exon	7449329	7449927	.	-	.	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
Ledus.S1	AUGUSTUS	start_codon	7449925	7449927	.	-	0	transcript_id "Ledus.S1G074000.t1"; gene_id "Ledus.S1G074000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8889.t1 is derived from g9919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2842498	2843414	.	-	.	Ledus.S3G036600
Ledus.S3	AUGUSTUS	transcript	2842498	2843414	.	-	.	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	stop_codon	2842495	2842497	.	-	0	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	CDS	2842498	2842649	0.31	-	2	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	exon	2842498	2842649	.	-	.	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	intron	2842650	2843080	.	-	.	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	CDS	2843081	2843126	0.51	-	0	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	exon	2843081	2843126	.	-	.	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	intron	2843127	2843245	.	-	.	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	CDS	2843246	2843278	0.54	-	0	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	exon	2843246	2843278	.	-	.	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	intron	2843279	2843378	.	-	.	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	CDS	2843379	2843414	0.9	-	0	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	exon	2843379	2843414	.	-	.	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
Ledus.S3	AUGUSTUS	start_codon	2843412	2843414	.	-	0	transcript_id "Ledus.S3G036600.t1"; gene_id "Ledus.S3G036600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9376.t1 is derived from g10406.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6434820	6438904	.	+	.	Ledus.S3G085300
Ledus.S3	AUGUSTUS	transcript	6434820	6438904	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	start_codon	6434820	6434822	.	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6434820	6434879	0.73	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6434820	6434879	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6434880	6434974	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6434975	6435037	0.71	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6434975	6435037	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6435038	6435325	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6435326	6435391	0.76	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6435326	6435391	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6435392	6435590	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6435591	6435731	1	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6435591	6435731	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6435732	6435810	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6435811	6435888	1	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6435811	6435888	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6435889	6435982	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6435983	6436066	1	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6435983	6436066	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6436067	6436224	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6436225	6436401	1	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6436225	6436401	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6436402	6436501	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6436502	6436570	1	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6436502	6436570	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6436571	6436750	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6436751	6436877	0.82	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6436751	6436877	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6436878	6436980	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6436981	6437053	0.55	+	2	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6436981	6437053	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6437054	6437173	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6437174	6437290	0.74	+	1	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6437174	6437290	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6437291	6437403	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6437404	6437523	0.98	+	1	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6437404	6437523	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6437524	6437759	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6437760	6437778	0.94	+	1	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6437760	6437778	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6437779	6437877	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6437878	6438336	1	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6437878	6438336	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6438337	6438419	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6438420	6438535	1	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6438420	6438535	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6438536	6438611	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6438612	6438705	0.95	+	1	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6438612	6438705	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	intron	6438706	6438826	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	CDS	6438827	6438904	0.76	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	exon	6438827	6438904	.	+	.	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
Ledus.S3	AUGUSTUS	stop_codon	6438905	6438907	.	+	0	transcript_id "Ledus.S3G085300.t1"; gene_id "Ledus.S3G085300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12078.t1 is derived from g5697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9394410	9395063	.	+	.	Ledus.S4G123400
Ledus.S4	AUGUSTUS	transcript	9394410	9395063	.	+	.	transcript_id "Ledus.S4G123400.t1"; gene_id "Ledus.S4G123400"
Ledus.S4	AUGUSTUS	start_codon	9394410	9394412	.	+	0	transcript_id "Ledus.S4G123400.t1"; gene_id "Ledus.S4G123400"
Ledus.S4	AUGUSTUS	CDS	9394410	9395063	0.81	+	0	transcript_id "Ledus.S4G123400.t1"; gene_id "Ledus.S4G123400"
Ledus.S4	AUGUSTUS	exon	9394410	9395063	.	+	.	transcript_id "Ledus.S4G123400.t1"; gene_id "Ledus.S4G123400"
Ledus.S4	AUGUSTUS	stop_codon	9395064	9395066	.	+	0	transcript_id "Ledus.S4G123400.t1"; gene_id "Ledus.S4G123400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2279.t1 is derived from g9142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16904205	16907025	.	-	.	Ledus.S2G216100
Ledus.S2	AUGUSTUS	transcript	16904205	16907025	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	stop_codon	16904202	16904204	.	-	0	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16904205	16904340	0.99	-	1	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16904205	16904340	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16904341	16904415	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16904416	16904516	0.87	-	0	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16904416	16904516	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16904517	16904633	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16904634	16904756	1	-	0	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16904634	16904756	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16904757	16904852	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16904853	16904967	1	-	1	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16904853	16904967	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16904968	16905071	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16905072	16905156	1	-	2	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16905072	16905156	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16905157	16905326	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16905327	16905367	1	-	1	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16905327	16905367	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16905368	16905500	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16905501	16905547	1	-	0	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16905501	16905547	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16905548	16905635	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16905636	16905710	1	-	0	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16905636	16905710	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16905711	16905802	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16905803	16905862	0.96	-	0	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16905803	16905862	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16905863	16905970	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16905971	16906024	0.96	-	0	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16905971	16906024	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16906025	16906224	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16906225	16906301	1	-	2	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16906225	16906301	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16906302	16906599	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16906600	16906677	1	-	2	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16906600	16906677	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16906678	16906827	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16906828	16906900	1	-	0	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16906828	16906900	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16906901	16906995	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16906996	16907025	1	-	0	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16906996	16907025	.	-	.	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	start_codon	16907023	16907025	.	-	0	transcript_id "Ledus.S2G216100.t1"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	transcript	16904205	16907025	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	stop_codon	16904202	16904204	.	-	0	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16904205	16904340	0.99	-	1	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16904205	16904340	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16904341	16904415	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16904416	16904516	0.84	-	0	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16904416	16904516	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16904517	16904633	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16904634	16904756	1	-	0	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16904634	16904756	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16904757	16904852	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16904853	16904967	1	-	1	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16904853	16904967	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16904968	16905071	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16905072	16905156	1	-	2	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16905072	16905156	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16905157	16905326	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16905327	16905367	1	-	1	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16905327	16905367	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16905368	16905500	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16905501	16905547	1	-	0	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16905501	16905547	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16905548	16905635	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16905636	16905710	1	-	0	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16905636	16905710	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16905711	16905802	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16905803	16905862	0.98	-	0	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16905803	16905862	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16905863	16905970	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16905971	16906024	0.98	-	0	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16905971	16906024	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16906025	16906224	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16906225	16906301	1	-	2	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16906225	16906301	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16906302	16906599	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16906600	16906680	1	-	2	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16906600	16906680	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16906681	16906827	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16906828	16906900	1	-	0	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16906828	16906900	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	intron	16906901	16906995	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	CDS	16906996	16907025	1	-	0	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	exon	16906996	16907025	.	-	.	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
Ledus.S2	AUGUSTUS	start_codon	16907023	16907025	.	-	0	transcript_id "Ledus.S2G216100.t2"; gene_id "Ledus.S2G216100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3863.t1 is derived from g1299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13224760	13226226	.	-	.	Ledus.S1G128400
Ledus.S1	AUGUSTUS	transcript	13224760	13226211	.	-	.	transcript_id "Ledus.S1G128400.t1"; gene_id "Ledus.S1G128400"
Ledus.S1	AUGUSTUS	stop_codon	13224757	13224759	.	-	0	transcript_id "Ledus.S1G128400.t1"; gene_id "Ledus.S1G128400"
Ledus.S1	AUGUSTUS	CDS	13224760	13226211	1	-	0	transcript_id "Ledus.S1G128400.t1"; gene_id "Ledus.S1G128400"
Ledus.S1	AUGUSTUS	exon	13224760	13226211	.	-	.	transcript_id "Ledus.S1G128400.t1"; gene_id "Ledus.S1G128400"
Ledus.S1	AUGUSTUS	start_codon	13226209	13226211	.	-	0	transcript_id "Ledus.S1G128400.t1"; gene_id "Ledus.S1G128400"
Ledus.S1	AUGUSTUS	transcript	13224760	13226226	.	-	.	transcript_id "Ledus.S1G128400.t2"; gene_id "Ledus.S1G128400"
Ledus.S1	AUGUSTUS	stop_codon	13224757	13224759	.	-	0	transcript_id "Ledus.S1G128400.t2"; gene_id "Ledus.S1G128400"
Ledus.S1	AUGUSTUS	CDS	13224760	13226226	0.96	-	0	transcript_id "Ledus.S1G128400.t2"; gene_id "Ledus.S1G128400"
Ledus.S1	AUGUSTUS	exon	13224760	13226226	.	-	.	transcript_id "Ledus.S1G128400.t2"; gene_id "Ledus.S1G128400"
Ledus.S1	AUGUSTUS	start_codon	13226224	13226226	.	-	0	transcript_id "Ledus.S1G128400.t2"; gene_id "Ledus.S1G128400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8971.t1 is derived from g10001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3616937	3620098	.	-	.	Ledus.S3G044800
Ledus.S3	AUGUSTUS	transcript	3616937	3620098	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	stop_codon	3616934	3616936	.	-	0	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	CDS	3616937	3617021	0.76	-	1	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	exon	3616937	3617021	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	intron	3617022	3617126	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	CDS	3617127	3617246	0.91	-	1	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	exon	3617127	3617246	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	intron	3617247	3617330	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	CDS	3617331	3617452	1	-	0	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	exon	3617331	3617452	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	intron	3617453	3617668	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	CDS	3617669	3617941	1	-	0	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	exon	3617669	3617941	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	intron	3617942	3618065	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	CDS	3618066	3618170	1	-	0	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	exon	3618066	3618170	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	intron	3618171	3618387	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	CDS	3618388	3618607	1	-	1	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	exon	3618388	3618607	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	intron	3618608	3618699	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	CDS	3618700	3618950	1	-	0	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	exon	3618700	3618950	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	intron	3618951	3619145	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	CDS	3619146	3619352	1	-	0	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	exon	3619146	3619352	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	intron	3619353	3619542	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	CDS	3619543	3619786	0.99	-	1	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	exon	3619543	3619786	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	intron	3619787	3619913	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	CDS	3619914	3620098	0.63	-	0	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	exon	3619914	3620098	.	-	.	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
Ledus.S3	AUGUSTUS	start_codon	3620096	3620098	.	-	0	transcript_id "Ledus.S3G044800.t1"; gene_id "Ledus.S3G044800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2355.t1 is derived from g9218.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17409133	17410356	.	+	.	Ledus.S2G223700
Ledus.S2	AUGUSTUS	transcript	17409133	17410356	.	+	.	transcript_id "Ledus.S2G223700.t1"; gene_id "Ledus.S2G223700"
Ledus.S2	AUGUSTUS	start_codon	17409133	17409135	.	+	0	transcript_id "Ledus.S2G223700.t1"; gene_id "Ledus.S2G223700"
Ledus.S2	AUGUSTUS	CDS	17409133	17409327	0.71	+	0	transcript_id "Ledus.S2G223700.t1"; gene_id "Ledus.S2G223700"
Ledus.S2	AUGUSTUS	exon	17409133	17409327	.	+	.	transcript_id "Ledus.S2G223700.t1"; gene_id "Ledus.S2G223700"
Ledus.S2	AUGUSTUS	intron	17409328	17409406	.	+	.	transcript_id "Ledus.S2G223700.t1"; gene_id "Ledus.S2G223700"
Ledus.S2	AUGUSTUS	CDS	17409407	17409803	1	+	0	transcript_id "Ledus.S2G223700.t1"; gene_id "Ledus.S2G223700"
Ledus.S2	AUGUSTUS	exon	17409407	17409803	.	+	.	transcript_id "Ledus.S2G223700.t1"; gene_id "Ledus.S2G223700"
Ledus.S2	AUGUSTUS	intron	17409804	17409907	.	+	.	transcript_id "Ledus.S2G223700.t1"; gene_id "Ledus.S2G223700"
Ledus.S2	AUGUSTUS	CDS	17409908	17410356	1	+	2	transcript_id "Ledus.S2G223700.t1"; gene_id "Ledus.S2G223700"
Ledus.S2	AUGUSTUS	exon	17409908	17410356	.	+	.	transcript_id "Ledus.S2G223700.t1"; gene_id "Ledus.S2G223700"
Ledus.S2	AUGUSTUS	stop_codon	17410357	17410359	.	+	0	transcript_id "Ledus.S2G223700.t1"; gene_id "Ledus.S2G223700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg5666.t1 is derived from g3105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25701583	25703199	.	-	.	Ledus.S1G308700
Ledus.S1	AUGUSTUS	transcript	25701583	25702821	.	-	.	transcript_id "Ledus.S1G308700.t1"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	stop_codon	25701580	25701582	.	-	0	transcript_id "Ledus.S1G308700.t1"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	CDS	25701583	25702821	1	-	0	transcript_id "Ledus.S1G308700.t1"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	exon	25701583	25702821	.	-	.	transcript_id "Ledus.S1G308700.t1"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	start_codon	25702819	25702821	.	-	0	transcript_id "Ledus.S1G308700.t1"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	transcript	25701583	25703199	.	-	.	transcript_id "Ledus.S1G308700.t2"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	stop_codon	25701580	25701582	.	-	0	transcript_id "Ledus.S1G308700.t2"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	CDS	25701583	25703199	0.81	-	0	transcript_id "Ledus.S1G308700.t2"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	exon	25701583	25703199	.	-	.	transcript_id "Ledus.S1G308700.t2"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	start_codon	25703197	25703199	.	-	0	transcript_id "Ledus.S1G308700.t2"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	transcript	25701583	25702785	.	-	.	transcript_id "Ledus.S1G308700.t3"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	stop_codon	25701580	25701582	.	-	0	transcript_id "Ledus.S1G308700.t3"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	CDS	25701583	25702785	0.76	-	0	transcript_id "Ledus.S1G308700.t3"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	exon	25701583	25702785	.	-	.	transcript_id "Ledus.S1G308700.t3"; gene_id "Ledus.S1G308700"
Ledus.S1	AUGUSTUS	start_codon	25702783	25702785	.	-	0	transcript_id "Ledus.S1G308700.t3"; gene_id "Ledus.S1G308700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3560.t1 is derived from g996.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9592546	9592893	.	-	.	Ledus.S1G098100
Ledus.S1	AUGUSTUS	transcript	9592546	9592893	.	-	.	transcript_id "Ledus.S1G098100.t1"; gene_id "Ledus.S1G098100"
Ledus.S1	AUGUSTUS	stop_codon	9592543	9592545	.	-	0	transcript_id "Ledus.S1G098100.t1"; gene_id "Ledus.S1G098100"
Ledus.S1	AUGUSTUS	CDS	9592546	9592893	0.89	-	0	transcript_id "Ledus.S1G098100.t1"; gene_id "Ledus.S1G098100"
Ledus.S1	AUGUSTUS	exon	9592546	9592893	.	-	.	transcript_id "Ledus.S1G098100.t1"; gene_id "Ledus.S1G098100"
Ledus.S1	AUGUSTUS	start_codon	9592891	9592893	.	-	0	transcript_id "Ledus.S1G098100.t1"; gene_id "Ledus.S1G098100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2609.t1 is derived from g42.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	409791	413454	.	-	.	Ledus.S1G003000
Ledus.S1	AUGUSTUS	transcript	409791	413454	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	stop_codon	409788	409790	.	-	0	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	409791	409916	1	-	0	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	409791	409916	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	409917	409993	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	409994	410089	1	-	0	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	409994	410089	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	410090	410180	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	410181	410256	1	-	1	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	410181	410256	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	410257	410352	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	410353	410494	1	-	2	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	410353	410494	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	410495	410580	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	410581	410692	1	-	0	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	410581	410692	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	410693	410852	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	410853	411005	0.99	-	0	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	410853	411005	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	411006	411109	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	411110	411165	0.98	-	2	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	411110	411165	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	411166	411277	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	411278	411335	1	-	0	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	411278	411335	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	411336	411426	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	411427	411496	1	-	1	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	411427	411496	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	411497	411606	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	411607	411738	1	-	1	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	411607	411738	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	411739	411890	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	411891	411960	1	-	2	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	411891	411960	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	411961	412056	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	412057	412132	1	-	0	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	412057	412132	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	412133	412225	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	412226	412329	1	-	2	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	412226	412329	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	412330	412429	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	412430	412496	0.93	-	0	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	412430	412496	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	412497	412606	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	412607	412802	0.74	-	1	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	412607	412802	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	412803	412907	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	412908	413067	0.9	-	2	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	412908	413067	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	413068	413152	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	413153	413175	1	-	1	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	413153	413175	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	413176	413278	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	413279	413454	0.96	-	0	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	413279	413454	.	-	.	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	start_codon	413452	413454	.	-	0	transcript_id "Ledus.S1G003000.t1"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	transcript	409791	413454	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	stop_codon	409788	409790	.	-	0	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	409791	409916	1	-	0	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	409791	409916	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	409917	409993	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	409994	410089	1	-	0	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	409994	410089	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	410090	410180	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	410181	410256	1	-	1	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	410181	410256	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	410257	410352	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	410353	410494	1	-	2	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	410353	410494	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	410495	410580	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	410581	410692	1	-	0	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	410581	410692	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	410693	410852	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	410853	411005	0.96	-	0	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	410853	411005	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	411006	411109	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	411110	411165	0.97	-	2	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	411110	411165	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	411166	411277	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	411278	411335	1	-	0	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	411278	411335	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	411336	411426	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	411427	411496	1	-	1	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	411427	411496	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	411497	411606	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	411607	411738	1	-	1	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	411607	411738	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	411739	411890	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	411891	411960	1	-	2	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	411891	411960	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	411961	412056	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	412057	412132	1	-	0	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	412057	412132	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	412133	412225	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	412226	412329	1	-	2	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	412226	412329	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	412330	412429	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	412430	412496	0.89	-	0	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	412430	412496	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	412497	412606	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	412607	412802	0.76	-	1	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	412607	412802	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	412803	412907	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	412908	413011	0.93	-	0	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	412908	413011	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	413012	413138	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	413139	413175	1	-	1	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	413139	413175	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	intron	413176	413278	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	CDS	413279	413454	0.98	-	0	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	exon	413279	413454	.	-	.	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
Ledus.S1	AUGUSTUS	start_codon	413452	413454	.	-	0	transcript_id "Ledus.S1G003000.t2"; gene_id "Ledus.S1G003000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7981.t1 is derived from g12652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8318579	8319765	.	+	.	Ledus.S5G075900
Ledus.S5	AUGUSTUS	transcript	8318579	8319765	.	+	.	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	start_codon	8318579	8318581	.	+	0	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	CDS	8318579	8318597	0.98	+	0	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	exon	8318579	8318597	.	+	.	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	intron	8318598	8318825	.	+	.	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	CDS	8318826	8319097	1	+	2	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	exon	8318826	8319097	.	+	.	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	intron	8319098	8319173	.	+	.	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	CDS	8319174	8319338	1	+	0	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	exon	8319174	8319338	.	+	.	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	intron	8319339	8319750	.	+	.	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	CDS	8319751	8319765	1	+	0	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	exon	8319751	8319765	.	+	.	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
Ledus.S5	AUGUSTUS	stop_codon	8319766	8319768	.	+	0	transcript_id "Ledus.S5G075900.t1"; gene_id "Ledus.S5G075900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8814.t1 is derived from g9844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2111117	2112704	.	-	.	Ledus.S3G029100
Ledus.S3	AUGUSTUS	transcript	2111117	2112704	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	stop_codon	2111114	2111116	.	-	0	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	CDS	2111117	2111434	1	-	0	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	exon	2111117	2111434	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	intron	2111435	2111522	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	CDS	2111523	2111621	1	-	0	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	exon	2111523	2111621	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	intron	2111622	2111702	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	CDS	2111703	2111840	1	-	0	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	exon	2111703	2111840	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	intron	2111841	2111924	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	CDS	2111925	2112055	1	-	2	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	exon	2111925	2112055	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	intron	2112056	2112139	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	CDS	2112140	2112286	1	-	2	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	exon	2112140	2112286	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	intron	2112287	2112372	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	CDS	2112373	2112405	1	-	2	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	exon	2112373	2112405	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	intron	2112406	2112495	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	CDS	2112496	2112589	1	-	0	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	exon	2112496	2112589	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	intron	2112590	2112662	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	CDS	2112663	2112704	0.83	-	0	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	exon	2112663	2112704	.	-	.	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
Ledus.S3	AUGUSTUS	start_codon	2112702	2112704	.	-	0	transcript_id "Ledus.S3G029100.t1"; gene_id "Ledus.S3G029100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2621.t1 is derived from g54.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	595326	597657	.	+	.	Ledus.S1G004200
Ledus.S1	AUGUSTUS	transcript	595326	597657	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	start_codon	595326	595328	.	+	0	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	CDS	595326	595533	1	+	0	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	exon	595326	595533	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	intron	595534	595613	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	CDS	595614	596020	1	+	2	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	exon	595614	596020	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	intron	596021	596117	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	CDS	596118	596294	1	+	0	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	exon	596118	596294	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	intron	596295	596377	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	CDS	596378	596602	1	+	0	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	exon	596378	596602	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	intron	596603	596713	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	CDS	596714	596890	1	+	0	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	exon	596714	596890	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	intron	596891	596971	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	CDS	596972	597217	1	+	0	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	exon	596972	597217	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	intron	597218	597308	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	CDS	597309	597398	1	+	0	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	exon	597309	597398	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	intron	597399	597486	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	CDS	597487	597657	0.98	+	0	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	exon	597487	597657	.	+	.	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
Ledus.S1	AUGUSTUS	stop_codon	597658	597660	.	+	0	transcript_id "Ledus.S1G004200.t1"; gene_id "Ledus.S1G004200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5767.t1 is derived from g3208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26665437	26667571	.	-	.	Ledus.S1G318800
Ledus.S1	AUGUSTUS	transcript	26665437	26667571	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	stop_codon	26665434	26665436	.	-	0	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	CDS	26665437	26665649	1	-	0	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	exon	26665437	26665649	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	intron	26665650	26665849	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	CDS	26665850	26666081	1	-	1	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	exon	26665850	26666081	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	intron	26666082	26666326	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	CDS	26666327	26666453	1	-	2	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	exon	26666327	26666453	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	intron	26666454	26666625	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	CDS	26666626	26666778	0.89	-	2	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	exon	26666626	26666778	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	intron	26666779	26667019	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	CDS	26667020	26667065	0.41	-	0	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	exon	26667020	26667065	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	intron	26667066	26667240	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	CDS	26667241	26667299	0.23	-	2	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	exon	26667241	26667299	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	intron	26667300	26667504	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	CDS	26667505	26667571	0.36	-	0	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	exon	26667505	26667571	.	-	.	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
Ledus.S1	AUGUSTUS	start_codon	26667569	26667571	.	-	0	transcript_id "Ledus.S1G318800.t1"; gene_id "Ledus.S1G318800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6583.t1 is derived from g4026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32493031	32494530	.	+	.	Ledus.S1G400400
Ledus.S1	AUGUSTUS	transcript	32493031	32494530	.	+	.	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	start_codon	32493031	32493033	.	+	0	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	CDS	32493031	32493290	0.87	+	0	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	exon	32493031	32493290	.	+	.	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	intron	32493291	32493362	.	+	.	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	CDS	32493363	32493768	1	+	1	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	exon	32493363	32493768	.	+	.	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	intron	32493769	32493848	.	+	.	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	CDS	32493849	32494052	1	+	0	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	exon	32493849	32494052	.	+	.	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	intron	32494053	32494129	.	+	.	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	CDS	32494130	32494307	0.95	+	0	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	exon	32494130	32494307	.	+	.	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	intron	32494308	32494420	.	+	.	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	CDS	32494421	32494530	0.81	+	2	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	exon	32494421	32494530	.	+	.	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
Ledus.S1	AUGUSTUS	stop_codon	32494531	32494533	.	+	0	transcript_id "Ledus.S1G400400.t1"; gene_id "Ledus.S1G400400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2444.t1 is derived from g9307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18125832	18129303	.	-	.	Ledus.S2G232600
Ledus.S2	AUGUSTUS	transcript	18125832	18129303	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	stop_codon	18125829	18125831	.	-	0	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18125832	18126054	0.91	-	1	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18125832	18126054	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18126055	18126134	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18126135	18126226	1	-	0	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18126135	18126226	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18126227	18126310	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18126311	18126427	1	-	0	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18126311	18126427	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18126428	18126582	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18126583	18126628	1	-	1	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18126583	18126628	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18126629	18126715	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18126716	18126780	0.93	-	0	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18126716	18126780	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18126781	18126899	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18126900	18126965	0.88	-	0	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18126900	18126965	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18126966	18127068	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18127069	18127149	0.92	-	0	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18127069	18127149	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18127150	18127313	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18127314	18127426	1	-	2	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18127314	18127426	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18127427	18127514	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18127515	18127683	1	-	0	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18127515	18127683	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18127684	18127793	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18127794	18127871	1	-	0	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18127794	18127871	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18127872	18128036	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18128037	18128159	1	-	0	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18128037	18128159	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18128160	18128248	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18128249	18128389	0.97	-	0	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18128249	18128389	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18128390	18128508	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18128509	18128699	0.98	-	2	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18128509	18128699	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18128700	18128802	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18128803	18128924	0.98	-	1	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18128803	18128924	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18128925	18129016	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18129017	18129110	1	-	2	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18129017	18129110	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	intron	18129111	18129251	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	CDS	18129252	18129303	0.92	-	0	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	exon	18129252	18129303	.	-	.	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
Ledus.S2	AUGUSTUS	start_codon	18129301	18129303	.	-	0	transcript_id "Ledus.S2G232600.t1"; gene_id "Ledus.S2G232600"
# This transcript jg3616.t2 is derived from g1052.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3616.t3 is derived from g1052.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3617.t1 is derived from g1053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10230893	10231132	.	+	.	Ledus.S1G103800
Ledus.S1	AUGUSTUS	transcript	10230893	10231132	.	+	.	transcript_id "Ledus.S1G103800.t1"; gene_id "Ledus.S1G103800"
Ledus.S1	AUGUSTUS	start_codon	10230893	10230895	.	+	0	transcript_id "Ledus.S1G103800.t1"; gene_id "Ledus.S1G103800"
Ledus.S1	AUGUSTUS	CDS	10230893	10231132	0.83	+	0	transcript_id "Ledus.S1G103800.t1"; gene_id "Ledus.S1G103800"
Ledus.S1	AUGUSTUS	exon	10230893	10231132	.	+	.	transcript_id "Ledus.S1G103800.t1"; gene_id "Ledus.S1G103800"
Ledus.S1	AUGUSTUS	stop_codon	10231133	10231135	.	+	0	transcript_id "Ledus.S1G103800.t1"; gene_id "Ledus.S1G103800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2231.t1 is derived from g9094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16188945	16189332	.	+	.	Ledus.S2G211300
Ledus.S2	AUGUSTUS	transcript	16188945	16189332	.	+	.	transcript_id "Ledus.S2G211300.t1"; gene_id "Ledus.S2G211300"
Ledus.S2	AUGUSTUS	start_codon	16188945	16188947	.	+	0	transcript_id "Ledus.S2G211300.t1"; gene_id "Ledus.S2G211300"
Ledus.S2	AUGUSTUS	CDS	16188945	16189045	0.97	+	0	transcript_id "Ledus.S2G211300.t1"; gene_id "Ledus.S2G211300"
Ledus.S2	AUGUSTUS	exon	16188945	16189045	.	+	.	transcript_id "Ledus.S2G211300.t1"; gene_id "Ledus.S2G211300"
Ledus.S2	AUGUSTUS	intron	16189046	16189130	.	+	.	transcript_id "Ledus.S2G211300.t1"; gene_id "Ledus.S2G211300"
Ledus.S2	AUGUSTUS	CDS	16189131	16189332	0.95	+	1	transcript_id "Ledus.S2G211300.t1"; gene_id "Ledus.S2G211300"
Ledus.S2	AUGUSTUS	exon	16189131	16189332	.	+	.	transcript_id "Ledus.S2G211300.t1"; gene_id "Ledus.S2G211300"
Ledus.S2	AUGUSTUS	stop_codon	16189333	16189335	.	+	0	transcript_id "Ledus.S2G211300.t1"; gene_id "Ledus.S2G211300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10482.t1 is derived from g11512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15537619	15538285	.	+	.	Ledus.S3G195900
Ledus.S3	AUGUSTUS	transcript	15537619	15538285	.	+	.	transcript_id "Ledus.S3G195900.t1"; gene_id "Ledus.S3G195900"
Ledus.S3	AUGUSTUS	start_codon	15537619	15537621	.	+	0	transcript_id "Ledus.S3G195900.t1"; gene_id "Ledus.S3G195900"
Ledus.S3	AUGUSTUS	CDS	15537619	15537661	0.92	+	0	transcript_id "Ledus.S3G195900.t1"; gene_id "Ledus.S3G195900"
Ledus.S3	AUGUSTUS	exon	15537619	15537661	.	+	.	transcript_id "Ledus.S3G195900.t1"; gene_id "Ledus.S3G195900"
Ledus.S3	AUGUSTUS	intron	15537662	15537756	.	+	.	transcript_id "Ledus.S3G195900.t1"; gene_id "Ledus.S3G195900"
Ledus.S3	AUGUSTUS	CDS	15537757	15538146	0.97	+	2	transcript_id "Ledus.S3G195900.t1"; gene_id "Ledus.S3G195900"
Ledus.S3	AUGUSTUS	exon	15537757	15538146	.	+	.	transcript_id "Ledus.S3G195900.t1"; gene_id "Ledus.S3G195900"
Ledus.S3	AUGUSTUS	intron	15538147	15538238	.	+	.	transcript_id "Ledus.S3G195900.t1"; gene_id "Ledus.S3G195900"
Ledus.S3	AUGUSTUS	CDS	15538239	15538285	1	+	2	transcript_id "Ledus.S3G195900.t1"; gene_id "Ledus.S3G195900"
Ledus.S3	AUGUSTUS	exon	15538239	15538285	.	+	.	transcript_id "Ledus.S3G195900.t1"; gene_id "Ledus.S3G195900"
Ledus.S3	AUGUSTUS	stop_codon	15538286	15538288	.	+	0	transcript_id "Ledus.S3G195900.t1"; gene_id "Ledus.S3G195900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7492.t1 is derived from g12163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3447232	3449704	.	-	.	Ledus.S5G027000
Ledus.S5	AUGUSTUS	transcript	3447232	3449704	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	stop_codon	3447229	3447231	.	-	0	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3447232	3447316	1	-	1	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3447232	3447316	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3447317	3447396	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3447397	3447494	1	-	0	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3447397	3447494	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3447495	3447589	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3447590	3447621	1	-	2	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3447590	3447621	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3447622	3448855	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3448856	3448918	1	-	2	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3448856	3448918	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3448919	3449004	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3449005	3449123	1	-	1	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3449005	3449123	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3449124	3449373	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3449374	3449453	1	-	0	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3449374	3449453	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3449454	3449641	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3449642	3449704	1	-	0	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3449642	3449704	.	-	.	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	start_codon	3449702	3449704	.	-	0	transcript_id "Ledus.S5G027000.t1"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	transcript	3447232	3449704	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	stop_codon	3447229	3447231	.	-	0	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3447232	3447316	1	-	1	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3447232	3447316	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3447317	3447396	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3447397	3447494	1	-	0	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3447397	3447494	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3447495	3447589	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3447590	3447621	1	-	2	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3447590	3447621	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3447622	3448855	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3448856	3448918	1	-	2	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3448856	3448918	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3448919	3449004	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3449005	3449123	0.79	-	1	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3449005	3449123	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3449124	3449282	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3449283	3449316	0.69	-	2	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3449283	3449316	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3449317	3449422	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3449423	3449453	0.59	-	0	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3449423	3449453	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	intron	3449454	3449641	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	CDS	3449642	3449704	0.78	-	0	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	exon	3449642	3449704	.	-	.	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
Ledus.S5	AUGUSTUS	start_codon	3449702	3449704	.	-	0	transcript_id "Ledus.S5G027000.t2"; gene_id "Ledus.S5G027000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4614.t1 is derived from g2051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18238980	18254814	.	-	.	Ledus.S1G203500
Ledus.S1	AUGUSTUS	transcript	18238980	18254814	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	stop_codon	18238977	18238979	.	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18238980	18239659	0.96	-	2	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18238980	18239659	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18239660	18239723	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18239724	18240000	0.4	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18239724	18240000	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18240001	18240189	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18240190	18240573	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18240190	18240573	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18240574	18240786	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18240787	18240912	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18240787	18240912	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18240913	18241088	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18241089	18241295	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18241089	18241295	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18241296	18241416	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18241417	18241510	1	-	1	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18241417	18241510	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18241511	18241656	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18241657	18241703	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18241657	18241703	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18241704	18241816	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18241817	18242269	0.86	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18241817	18242269	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18242270	18242347	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18242348	18242683	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18242348	18242683	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18242684	18242879	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18242880	18243359	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18242880	18243359	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18243360	18243517	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18243518	18243739	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18243518	18243739	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18243740	18243917	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18243918	18244119	1	-	1	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18243918	18244119	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18244120	18244212	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18244213	18244267	0.76	-	2	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18244213	18244267	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18244268	18244404	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18244405	18244700	0.77	-	1	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18244405	18244700	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18244701	18244831	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18244832	18244974	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18244832	18244974	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18244975	18245144	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18245145	18245321	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18245145	18245321	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18245322	18245482	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18245483	18245710	0.94	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18245483	18245710	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18245711	18246209	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18246210	18246456	0.94	-	1	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18246210	18246456	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18246457	18246867	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18246868	18247210	0.98	-	2	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18246868	18247210	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18247211	18247346	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18247347	18247848	0.56	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18247347	18247848	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18247849	18247941	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18247942	18248260	0.79	-	1	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18247942	18248260	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18248261	18248379	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18248380	18248540	0.98	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18248380	18248540	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18248541	18248809	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18248810	18249004	0.99	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18248810	18249004	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18249005	18249100	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18249101	18249445	0.76	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18249101	18249445	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18249446	18249662	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18249663	18249704	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18249663	18249704	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18249705	18249964	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18249965	18250120	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18249965	18250120	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18250121	18250242	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18250243	18250392	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18250243	18250392	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18250393	18250562	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18250563	18250724	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18250563	18250724	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18250725	18250845	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18250846	18251316	0.99	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18250846	18251316	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18251317	18251522	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18251523	18251868	1	-	1	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18251523	18251868	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18251869	18252088	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18252089	18252562	0.66	-	1	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18252089	18252562	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18252563	18252772	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18252773	18252850	0.66	-	1	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18252773	18252850	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18252851	18252948	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18252949	18253168	1	-	2	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18252949	18253168	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18253169	18253354	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18253355	18253744	0.77	-	2	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18253355	18253744	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18253745	18253833	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18253834	18253995	1	-	2	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18253834	18253995	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18253996	18254181	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18254182	18254425	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18254182	18254425	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18254426	18254526	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18254527	18254590	1	-	1	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18254527	18254590	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18254591	18254677	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18254678	18254814	1	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18254678	18254814	.	-	.	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	start_codon	18254812	18254814	.	-	0	transcript_id "Ledus.S1G203500.t1"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	transcript	18238980	18254814	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	stop_codon	18238977	18238979	.	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18238980	18239659	0.95	-	2	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18238980	18239659	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18239660	18239723	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18239724	18240000	0.54	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18239724	18240000	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18240001	18240189	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18240190	18240573	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18240190	18240573	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18240574	18240786	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18240787	18240912	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18240787	18240912	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18240913	18241088	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18241089	18241295	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18241089	18241295	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18241296	18241416	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18241417	18241510	1	-	1	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18241417	18241510	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18241511	18241656	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18241657	18241703	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18241657	18241703	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18241704	18241816	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18241817	18242269	0.94	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18241817	18242269	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18242270	18242347	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18242348	18242683	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18242348	18242683	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18242684	18242879	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18242880	18243359	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18242880	18243359	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18243360	18243517	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18243518	18243739	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18243518	18243739	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18243740	18243917	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18243918	18244119	1	-	1	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18243918	18244119	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18244120	18244212	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18244213	18244267	0.71	-	2	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18244213	18244267	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18244268	18244404	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18244405	18244700	0.8	-	1	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18244405	18244700	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18244701	18244831	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18244832	18244974	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18244832	18244974	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18244975	18245144	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18245145	18245321	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18245145	18245321	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18245322	18245482	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18245483	18245710	0.93	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18245483	18245710	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18245711	18246209	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18246210	18246456	0.98	-	1	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18246210	18246456	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18246457	18246867	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18246868	18247210	0.99	-	2	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18246868	18247210	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18247211	18247346	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18247347	18247848	0.62	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18247347	18247848	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18247849	18247941	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18247942	18248260	0.86	-	1	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18247942	18248260	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18248261	18248379	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18248380	18248540	0.95	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18248380	18248540	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18248541	18248809	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18248810	18249004	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18248810	18249004	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18249005	18249100	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18249101	18249257	0.29	-	1	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18249101	18249257	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18249258	18249364	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18249365	18249435	0.29	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18249365	18249435	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18249436	18249662	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18249663	18249704	0.91	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18249663	18249704	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18249705	18249964	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18249965	18250120	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18249965	18250120	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18250121	18250242	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18250243	18250392	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18250243	18250392	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18250393	18250562	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18250563	18250724	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18250563	18250724	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18250725	18250845	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18250846	18251316	1	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18250846	18251316	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18251317	18251522	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18251523	18251868	1	-	1	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18251523	18251868	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18251869	18252088	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18252089	18252562	0.67	-	1	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18252089	18252562	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18252563	18252772	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18252773	18252850	0.6	-	1	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18252773	18252850	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18252851	18252948	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18252949	18253168	1	-	2	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18252949	18253168	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18253169	18253354	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18253355	18253744	0.77	-	2	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18253355	18253744	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18253745	18253833	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18253834	18253995	1	-	2	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18253834	18253995	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18253996	18254181	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18254182	18254425	0.97	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18254182	18254425	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18254426	18254526	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18254527	18254590	1	-	1	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18254527	18254590	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	intron	18254591	18254677	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	CDS	18254678	18254814	0.98	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	exon	18254678	18254814	.	-	.	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
Ledus.S1	AUGUSTUS	start_codon	18254812	18254814	.	-	0	transcript_id "Ledus.S1G203500.t2"; gene_id "Ledus.S1G203500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9130.t1 is derived from g10160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4727349	4728317	.	-	.	Ledus.S3G060700
Ledus.S3	AUGUSTUS	transcript	4727349	4728317	.	-	.	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	stop_codon	4727346	4727348	.	-	0	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	CDS	4727349	4727386	1	-	2	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	exon	4727349	4727386	.	-	.	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	intron	4727387	4727538	.	-	.	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	CDS	4727539	4727597	1	-	1	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	exon	4727539	4727597	.	-	.	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	intron	4727598	4727685	.	-	.	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	CDS	4727686	4728007	1	-	2	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	exon	4727686	4728007	.	-	.	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	intron	4728008	4728100	.	-	.	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	CDS	4728101	4728317	0.78	-	0	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	exon	4728101	4728317	.	-	.	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
Ledus.S3	AUGUSTUS	start_codon	4728315	4728317	.	-	0	transcript_id "Ledus.S3G060700.t1"; gene_id "Ledus.S3G060700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7508.t1 is derived from g12179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3511175	3511645	.	-	.	Ledus.S5G028600
Ledus.S5	AUGUSTUS	transcript	3511175	3511645	.	-	.	transcript_id "Ledus.S5G028600.t1"; gene_id "Ledus.S5G028600"
Ledus.S5	AUGUSTUS	stop_codon	3511172	3511174	.	-	0	transcript_id "Ledus.S5G028600.t1"; gene_id "Ledus.S5G028600"
Ledus.S5	AUGUSTUS	CDS	3511175	3511645	0.83	-	0	transcript_id "Ledus.S5G028600.t1"; gene_id "Ledus.S5G028600"
Ledus.S5	AUGUSTUS	exon	3511175	3511645	.	-	.	transcript_id "Ledus.S5G028600.t1"; gene_id "Ledus.S5G028600"
Ledus.S5	AUGUSTUS	start_codon	3511643	3511645	.	-	0	transcript_id "Ledus.S5G028600.t1"; gene_id "Ledus.S5G028600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11401.t1 is derived from g5019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4009947	4011479	.	-	.	Ledus.S4G055700
Ledus.S4	AUGUSTUS	transcript	4009947	4011479	.	-	.	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	stop_codon	4009944	4009946	.	-	0	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	CDS	4009947	4010231	0.78	-	0	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	exon	4009947	4010231	.	-	.	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	intron	4010232	4010308	.	-	.	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	CDS	4010309	4010558	0.97	-	1	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	exon	4010309	4010558	.	-	.	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	intron	4010559	4010670	.	-	.	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	CDS	4010671	4010811	1	-	1	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	exon	4010671	4010811	.	-	.	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	intron	4010812	4010883	.	-	.	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	CDS	4010884	4011479	0.99	-	0	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	exon	4010884	4011479	.	-	.	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
Ledus.S4	AUGUSTUS	start_codon	4011477	4011479	.	-	0	transcript_id "Ledus.S4G055700.t1"; gene_id "Ledus.S4G055700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9362.t1 is derived from g10392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6376909	6377524	.	-	.	Ledus.S3G083900
Ledus.S3	AUGUSTUS	transcript	6376909	6377524	.	-	.	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	stop_codon	6376906	6376908	.	-	0	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	CDS	6376909	6377141	1	-	2	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	exon	6376909	6377141	.	-	.	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	intron	6377142	6377217	.	-	.	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	CDS	6377218	6377322	0.81	-	2	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	exon	6377218	6377322	.	-	.	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	intron	6377323	6377396	.	-	.	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	CDS	6377397	6377405	0.72	-	2	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	exon	6377397	6377405	.	-	.	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	intron	6377406	6377502	.	-	.	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	CDS	6377503	6377524	0.66	-	0	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	exon	6377503	6377524	.	-	.	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
Ledus.S3	AUGUSTUS	start_codon	6377522	6377524	.	-	0	transcript_id "Ledus.S3G083900.t1"; gene_id "Ledus.S3G083900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1278.t1 is derived from g8139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9032139	9033626	.	+	.	Ledus.S2G116000
Ledus.S2	AUGUSTUS	transcript	9032139	9033626	.	+	.	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	start_codon	9032139	9032141	.	+	0	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	CDS	9032139	9032284	0.43	+	0	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	exon	9032139	9032284	.	+	.	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	intron	9032285	9032406	.	+	.	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	CDS	9032407	9032469	1	+	1	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	exon	9032407	9032469	.	+	.	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	intron	9032470	9032905	.	+	.	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	CDS	9032906	9032983	1	+	1	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	exon	9032906	9032983	.	+	.	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	intron	9032984	9033085	.	+	.	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	CDS	9033086	9033248	0.92	+	1	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	exon	9033086	9033248	.	+	.	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	intron	9033249	9033353	.	+	.	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	CDS	9033354	9033626	1	+	0	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	exon	9033354	9033626	.	+	.	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
Ledus.S2	AUGUSTUS	stop_codon	9033627	9033629	.	+	0	transcript_id "Ledus.S2G116000.t1"; gene_id "Ledus.S2G116000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10376.t1 is derived from g11406.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14589768	14590686	.	+	.	Ledus.S3G185300
Ledus.S3	AUGUSTUS	transcript	14589768	14590686	.	+	.	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	start_codon	14589768	14589770	.	+	0	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	CDS	14589768	14589998	0.83	+	0	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	exon	14589768	14589998	.	+	.	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	intron	14589999	14590130	.	+	.	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	CDS	14590131	14590292	1	+	0	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	exon	14590131	14590292	.	+	.	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	intron	14590293	14590373	.	+	.	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	CDS	14590374	14590439	1	+	0	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	exon	14590374	14590439	.	+	.	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	intron	14590440	14590518	.	+	.	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	CDS	14590519	14590686	0.61	+	0	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	exon	14590519	14590686	.	+	.	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
Ledus.S3	AUGUSTUS	stop_codon	14590687	14590689	.	+	0	transcript_id "Ledus.S3G185300.t1"; gene_id "Ledus.S3G185300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5151.t1 is derived from g2590.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21978001	21980068	.	+	.	Ledus.S1G257200
Ledus.S1	AUGUSTUS	transcript	21978001	21980068	.	+	.	transcript_id "Ledus.S1G257200.t1"; gene_id "Ledus.S1G257200"
Ledus.S1	AUGUSTUS	start_codon	21978001	21978003	.	+	0	transcript_id "Ledus.S1G257200.t1"; gene_id "Ledus.S1G257200"
Ledus.S1	AUGUSTUS	CDS	21978001	21978260	1	+	0	transcript_id "Ledus.S1G257200.t1"; gene_id "Ledus.S1G257200"
Ledus.S1	AUGUSTUS	exon	21978001	21978260	.	+	.	transcript_id "Ledus.S1G257200.t1"; gene_id "Ledus.S1G257200"
Ledus.S1	AUGUSTUS	intron	21978261	21978341	.	+	.	transcript_id "Ledus.S1G257200.t1"; gene_id "Ledus.S1G257200"
Ledus.S1	AUGUSTUS	CDS	21978342	21978469	1	+	1	transcript_id "Ledus.S1G257200.t1"; gene_id "Ledus.S1G257200"
Ledus.S1	AUGUSTUS	exon	21978342	21978469	.	+	.	transcript_id "Ledus.S1G257200.t1"; gene_id "Ledus.S1G257200"
Ledus.S1	AUGUSTUS	intron	21978470	21978542	.	+	.	transcript_id "Ledus.S1G257200.t1"; gene_id "Ledus.S1G257200"
Ledus.S1	AUGUSTUS	CDS	21978543	21980068	1	+	2	transcript_id "Ledus.S1G257200.t1"; gene_id "Ledus.S1G257200"
Ledus.S1	AUGUSTUS	exon	21978543	21980068	.	+	.	transcript_id "Ledus.S1G257200.t1"; gene_id "Ledus.S1G257200"
Ledus.S1	AUGUSTUS	stop_codon	21980069	21980071	.	+	0	transcript_id "Ledus.S1G257200.t1"; gene_id "Ledus.S1G257200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7118.t1 is derived from g6649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1661754	1663519	.	-	.	Ledus.C7G017900
Ledus.C7	AUGUSTUS	transcript	1661754	1663519	.	-	.	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	stop_codon	1661751	1661753	.	-	0	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	CDS	1661754	1662237	1	-	1	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	exon	1661754	1662237	.	-	.	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	intron	1662238	1662325	.	-	.	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	CDS	1662326	1662428	1	-	2	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	exon	1662326	1662428	.	-	.	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	intron	1662429	1662564	.	-	.	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	CDS	1662565	1662786	1	-	2	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	exon	1662565	1662786	.	-	.	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	intron	1662787	1662948	.	-	.	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	CDS	1662949	1662999	1	-	2	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	exon	1662949	1662999	.	-	.	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	intron	1663000	1663161	.	-	.	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	CDS	1663162	1663304	1	-	1	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	exon	1663162	1663304	.	-	.	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	intron	1663305	1663391	.	-	.	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	CDS	1663392	1663519	0.45	-	0	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	exon	1663392	1663519	.	-	.	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
Ledus.C7	AUGUSTUS	start_codon	1663517	1663519	.	-	0	transcript_id "Ledus.C7G017900.t1"; gene_id "Ledus.C7G017900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7715.t1 is derived from g12386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5417367	5418106	.	+	.	Ledus.S5G049300
Ledus.S5	AUGUSTUS	transcript	5417367	5418106	.	+	.	transcript_id "Ledus.S5G049300.t1"; gene_id "Ledus.S5G049300"
Ledus.S5	AUGUSTUS	start_codon	5417367	5417369	.	+	0	transcript_id "Ledus.S5G049300.t1"; gene_id "Ledus.S5G049300"
Ledus.S5	AUGUSTUS	CDS	5417367	5417533	0.36	+	0	transcript_id "Ledus.S5G049300.t1"; gene_id "Ledus.S5G049300"
Ledus.S5	AUGUSTUS	exon	5417367	5417533	.	+	.	transcript_id "Ledus.S5G049300.t1"; gene_id "Ledus.S5G049300"
Ledus.S5	AUGUSTUS	intron	5417534	5417715	.	+	.	transcript_id "Ledus.S5G049300.t1"; gene_id "Ledus.S5G049300"
Ledus.S5	AUGUSTUS	CDS	5417716	5418106	0.46	+	1	transcript_id "Ledus.S5G049300.t1"; gene_id "Ledus.S5G049300"
Ledus.S5	AUGUSTUS	exon	5417716	5418106	.	+	.	transcript_id "Ledus.S5G049300.t1"; gene_id "Ledus.S5G049300"
Ledus.S5	AUGUSTUS	stop_codon	5418107	5418109	.	+	0	transcript_id "Ledus.S5G049300.t1"; gene_id "Ledus.S5G049300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2060.t1 is derived from g8923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14389843	14392017	.	-	.	Ledus.S2G194200
Ledus.S2	AUGUSTUS	transcript	14389843	14392017	.	-	.	transcript_id "Ledus.S2G194200.t1"; gene_id "Ledus.S2G194200"
Ledus.S2	AUGUSTUS	stop_codon	14389840	14389842	.	-	0	transcript_id "Ledus.S2G194200.t1"; gene_id "Ledus.S2G194200"
Ledus.S2	AUGUSTUS	CDS	14389843	14392017	1	-	0	transcript_id "Ledus.S2G194200.t1"; gene_id "Ledus.S2G194200"
Ledus.S2	AUGUSTUS	exon	14389843	14392017	.	-	.	transcript_id "Ledus.S2G194200.t1"; gene_id "Ledus.S2G194200"
Ledus.S2	AUGUSTUS	start_codon	14392015	14392017	.	-	0	transcript_id "Ledus.S2G194200.t1"; gene_id "Ledus.S2G194200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5160.t1 is derived from g2599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22029483	22029719	.	+	.	Ledus.S1G258100
Ledus.S1	AUGUSTUS	transcript	22029483	22029719	.	+	.	transcript_id "Ledus.S1G258100.t1"; gene_id "Ledus.S1G258100"
Ledus.S1	AUGUSTUS	start_codon	22029483	22029485	.	+	0	transcript_id "Ledus.S1G258100.t1"; gene_id "Ledus.S1G258100"
Ledus.S1	AUGUSTUS	CDS	22029483	22029719	0.59	+	0	transcript_id "Ledus.S1G258100.t1"; gene_id "Ledus.S1G258100"
Ledus.S1	AUGUSTUS	exon	22029483	22029719	.	+	.	transcript_id "Ledus.S1G258100.t1"; gene_id "Ledus.S1G258100"
Ledus.S1	AUGUSTUS	stop_codon	22029720	22029722	.	+	0	transcript_id "Ledus.S1G258100.t1"; gene_id "Ledus.S1G258100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12660.t1 is derived from g6282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13688721	13689041	.	+	.	Ledus.S4G181600
Ledus.S4	AUGUSTUS	transcript	13688721	13689041	.	+	.	transcript_id "Ledus.S4G181600.t1"; gene_id "Ledus.S4G181600"
Ledus.S4	AUGUSTUS	start_codon	13688721	13688723	.	+	0	transcript_id "Ledus.S4G181600.t1"; gene_id "Ledus.S4G181600"
Ledus.S4	AUGUSTUS	CDS	13688721	13689041	0.33	+	0	transcript_id "Ledus.S4G181600.t1"; gene_id "Ledus.S4G181600"
Ledus.S4	AUGUSTUS	exon	13688721	13689041	.	+	.	transcript_id "Ledus.S4G181600.t1"; gene_id "Ledus.S4G181600"
Ledus.S4	AUGUSTUS	stop_codon	13689042	13689044	.	+	0	transcript_id "Ledus.S4G181600.t1"; gene_id "Ledus.S4G181600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1395.t1 is derived from g8256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9816436	9820780	.	-	.	Ledus.S2G127700
Ledus.S2	AUGUSTUS	transcript	9816436	9820780	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	stop_codon	9816433	9816435	.	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9816436	9816494	0.42	-	2	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9816436	9816494	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9816495	9816704	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9816705	9816744	0.46	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9816705	9816744	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9816745	9816983	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9816984	9817109	1	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9816984	9817109	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9817110	9817186	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9817187	9817258	0.99	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9817187	9817258	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9817259	9817371	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9817372	9817454	0.99	-	2	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9817372	9817454	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9817455	9817658	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9817659	9817750	0.93	-	1	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9817659	9817750	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9817751	9817860	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9817861	9817937	1	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9817861	9817937	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9817938	9818109	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9818110	9818349	1	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9818110	9818349	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9818350	9818429	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9818430	9818503	1	-	2	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9818430	9818503	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9818504	9818636	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9818637	9818775	1	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9818637	9818775	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9818776	9818907	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9818908	9819170	0.98	-	2	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9818908	9819170	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9819171	9819321	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9819322	9819520	1	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9819322	9819520	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9819521	9819640	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9819641	9819748	1	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9819641	9819748	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9819749	9819870	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9819871	9820200	0.99	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9819871	9820200	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9820201	9820322	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9820323	9820553	0.97	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9820323	9820553	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	intron	9820554	9820651	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	CDS	9820652	9820780	1	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	exon	9820652	9820780	.	-	.	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
Ledus.S2	AUGUSTUS	start_codon	9820778	9820780	.	-	0	transcript_id "Ledus.S2G127700.t1"; gene_id "Ledus.S2G127700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2459.t1 is derived from g9322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18265218	18266880	.	+	.	Ledus.S2G234100
Ledus.S2	AUGUSTUS	transcript	18265218	18266880	.	+	.	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	start_codon	18265218	18265220	.	+	0	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	CDS	18265218	18265845	0.17	+	0	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	exon	18265218	18265845	.	+	.	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	intron	18265846	18265949	.	+	.	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	CDS	18265950	18266025	1	+	2	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	exon	18265950	18266025	.	+	.	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	intron	18266026	18266132	.	+	.	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	CDS	18266133	18266248	0.99	+	1	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	exon	18266133	18266248	.	+	.	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	intron	18266249	18266359	.	+	.	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	CDS	18266360	18266880	0.98	+	2	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	exon	18266360	18266880	.	+	.	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
Ledus.S2	AUGUSTUS	stop_codon	18266881	18266883	.	+	0	transcript_id "Ledus.S2G234100.t1"; gene_id "Ledus.S2G234100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4983.t1 is derived from g2421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20969903	20971788	.	+	.	Ledus.S1G240400
Ledus.S1	AUGUSTUS	transcript	20969903	20971788	.	+	.	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	start_codon	20969903	20969905	.	+	0	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	CDS	20969903	20970123	0.94	+	0	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	exon	20969903	20970123	.	+	.	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	intron	20970124	20970219	.	+	.	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	CDS	20970220	20970235	0.92	+	1	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	exon	20970220	20970235	.	+	.	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	intron	20970236	20970556	.	+	.	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	CDS	20970557	20970828	1	+	0	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	exon	20970557	20970828	.	+	.	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	intron	20970829	20970926	.	+	.	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	CDS	20970927	20971134	1	+	1	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	exon	20970927	20971134	.	+	.	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	intron	20971135	20971265	.	+	.	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	CDS	20971266	20971498	1	+	0	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	exon	20971266	20971498	.	+	.	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	intron	20971499	20971616	.	+	.	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	CDS	20971617	20971788	0.83	+	1	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	exon	20971617	20971788	.	+	.	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	stop_codon	20971789	20971791	.	+	0	transcript_id "Ledus.S1G240400.t1"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	transcript	20969903	20971788	.	+	.	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	start_codon	20969903	20969905	.	+	0	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	CDS	20969903	20970123	0.93	+	0	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	exon	20969903	20970123	.	+	.	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	intron	20970124	20970235	.	+	.	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	CDS	20970236	20970314	0.57	+	1	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	exon	20970236	20970314	.	+	.	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	intron	20970315	20970556	.	+	.	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	CDS	20970557	20970828	0.94	+	0	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	exon	20970557	20970828	.	+	.	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	intron	20970829	20970926	.	+	.	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	CDS	20970927	20971134	1	+	1	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	exon	20970927	20971134	.	+	.	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	intron	20971135	20971265	.	+	.	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	CDS	20971266	20971498	1	+	0	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	exon	20971266	20971498	.	+	.	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	intron	20971499	20971616	.	+	.	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	CDS	20971617	20971788	0.68	+	1	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	exon	20971617	20971788	.	+	.	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
Ledus.S1	AUGUSTUS	stop_codon	20971789	20971791	.	+	0	transcript_id "Ledus.S1G240400.t2"; gene_id "Ledus.S1G240400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2598.t1 is derived from g31.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	237974	238279	.	-	.	Ledus.S1G001900
Ledus.S1	AUGUSTUS	transcript	237974	238279	.	-	.	transcript_id "Ledus.S1G001900.t1"; gene_id "Ledus.S1G001900"
Ledus.S1	AUGUSTUS	stop_codon	237971	237973	.	-	0	transcript_id "Ledus.S1G001900.t1"; gene_id "Ledus.S1G001900"
Ledus.S1	AUGUSTUS	CDS	237974	238279	0.91	-	0	transcript_id "Ledus.S1G001900.t1"; gene_id "Ledus.S1G001900"
Ledus.S1	AUGUSTUS	exon	237974	238279	.	-	.	transcript_id "Ledus.S1G001900.t1"; gene_id "Ledus.S1G001900"
Ledus.S1	AUGUSTUS	start_codon	238277	238279	.	-	0	transcript_id "Ledus.S1G001900.t1"; gene_id "Ledus.S1G001900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11575.t1 is derived from g5193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5342179	5344624	.	+	.	Ledus.S4G073100
Ledus.S4	AUGUSTUS	transcript	5342179	5344624	.	+	.	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	start_codon	5342179	5342181	.	+	0	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	CDS	5342179	5342319	0.37	+	0	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	exon	5342179	5342319	.	+	.	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	intron	5342320	5342604	.	+	.	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	CDS	5342605	5343143	0.86	+	0	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	exon	5342605	5343143	.	+	.	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	intron	5343144	5343268	.	+	.	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	CDS	5343269	5344207	0.83	+	1	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	exon	5343269	5344207	.	+	.	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	intron	5344208	5344344	.	+	.	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	CDS	5344345	5344624	0.95	+	1	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	exon	5344345	5344624	.	+	.	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
Ledus.S4	AUGUSTUS	stop_codon	5344625	5344627	.	+	0	transcript_id "Ledus.S4G073100.t1"; gene_id "Ledus.S4G073100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8217.t1 is derived from g12888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9991448	9992602	.	+	.	Ledus.S5G099500
Ledus.S5	AUGUSTUS	transcript	9991448	9992602	.	+	.	transcript_id "Ledus.S5G099500.t1"; gene_id "Ledus.S5G099500"
Ledus.S5	AUGUSTUS	start_codon	9991448	9991450	.	+	0	transcript_id "Ledus.S5G099500.t1"; gene_id "Ledus.S5G099500"
Ledus.S5	AUGUSTUS	CDS	9991448	9991455	0.93	+	0	transcript_id "Ledus.S5G099500.t1"; gene_id "Ledus.S5G099500"
Ledus.S5	AUGUSTUS	exon	9991448	9991455	.	+	.	transcript_id "Ledus.S5G099500.t1"; gene_id "Ledus.S5G099500"
Ledus.S5	AUGUSTUS	intron	9991456	9991711	.	+	.	transcript_id "Ledus.S5G099500.t1"; gene_id "Ledus.S5G099500"
Ledus.S5	AUGUSTUS	CDS	9991712	9991905	0.62	+	1	transcript_id "Ledus.S5G099500.t1"; gene_id "Ledus.S5G099500"
Ledus.S5	AUGUSTUS	exon	9991712	9991905	.	+	.	transcript_id "Ledus.S5G099500.t1"; gene_id "Ledus.S5G099500"
Ledus.S5	AUGUSTUS	intron	9991906	9992135	.	+	.	transcript_id "Ledus.S5G099500.t1"; gene_id "Ledus.S5G099500"
Ledus.S5	AUGUSTUS	CDS	9992136	9992602	0.55	+	2	transcript_id "Ledus.S5G099500.t1"; gene_id "Ledus.S5G099500"
Ledus.S5	AUGUSTUS	exon	9992136	9992602	.	+	.	transcript_id "Ledus.S5G099500.t1"; gene_id "Ledus.S5G099500"
Ledus.S5	AUGUSTUS	stop_codon	9992603	9992605	.	+	0	transcript_id "Ledus.S5G099500.t1"; gene_id "Ledus.S5G099500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10708.t1 is derived from g11738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17303107	17305002	.	-	.	Ledus.S3G218500
Ledus.S3	AUGUSTUS	transcript	17303107	17305002	.	-	.	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	stop_codon	17303104	17303106	.	-	0	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	CDS	17303107	17303481	1	-	0	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	exon	17303107	17303481	.	-	.	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	intron	17303482	17303571	.	-	.	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	CDS	17303572	17303700	1	-	0	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	exon	17303572	17303700	.	-	.	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	intron	17303701	17303794	.	-	.	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	CDS	17303795	17303929	1	-	0	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	exon	17303795	17303929	.	-	.	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	intron	17303930	17304117	.	-	.	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	CDS	17304118	17304384	0.66	-	0	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	exon	17304118	17304384	.	-	.	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	intron	17304385	17304513	.	-	.	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	CDS	17304514	17304720	0.82	-	0	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	exon	17304514	17304720	.	-	.	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	intron	17304721	17304825	.	-	.	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	CDS	17304826	17305002	0.39	-	0	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	exon	17304826	17305002	.	-	.	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
Ledus.S3	AUGUSTUS	start_codon	17305000	17305002	.	-	0	transcript_id "Ledus.S3G218500.t1"; gene_id "Ledus.S3G218500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2263.t1 is derived from g9126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16676352	16676558	.	+	.	Ledus.S2G214500
Ledus.S2	AUGUSTUS	transcript	16676352	16676558	.	+	.	transcript_id "Ledus.S2G214500.t1"; gene_id "Ledus.S2G214500"
Ledus.S2	AUGUSTUS	start_codon	16676352	16676354	.	+	0	transcript_id "Ledus.S2G214500.t1"; gene_id "Ledus.S2G214500"
Ledus.S2	AUGUSTUS	CDS	16676352	16676558	0.6	+	0	transcript_id "Ledus.S2G214500.t1"; gene_id "Ledus.S2G214500"
Ledus.S2	AUGUSTUS	exon	16676352	16676558	.	+	.	transcript_id "Ledus.S2G214500.t1"; gene_id "Ledus.S2G214500"
Ledus.S2	AUGUSTUS	stop_codon	16676559	16676561	.	+	0	transcript_id "Ledus.S2G214500.t1"; gene_id "Ledus.S2G214500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg564.t1 is derived from g7425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3361672	3362244	.	-	.	Ledus.S2G044600
Ledus.S2	AUGUSTUS	transcript	3361672	3362244	.	-	.	transcript_id "Ledus.S2G044600.t1"; gene_id "Ledus.S2G044600"
Ledus.S2	AUGUSTUS	stop_codon	3361669	3361671	.	-	0	transcript_id "Ledus.S2G044600.t1"; gene_id "Ledus.S2G044600"
Ledus.S2	AUGUSTUS	CDS	3361672	3362244	0.97	-	0	transcript_id "Ledus.S2G044600.t1"; gene_id "Ledus.S2G044600"
Ledus.S2	AUGUSTUS	exon	3361672	3362244	.	-	.	transcript_id "Ledus.S2G044600.t1"; gene_id "Ledus.S2G044600"
Ledus.S2	AUGUSTUS	start_codon	3362242	3362244	.	-	0	transcript_id "Ledus.S2G044600.t1"; gene_id "Ledus.S2G044600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4446.t1 is derived from g1882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17142026	17142744	.	+	.	Ledus.S1G186700
Ledus.S1	AUGUSTUS	transcript	17142026	17142744	.	+	.	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	start_codon	17142026	17142028	.	+	0	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	CDS	17142026	17142028	0.98	+	0	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	exon	17142026	17142028	.	+	.	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	intron	17142029	17142269	.	+	.	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	CDS	17142270	17142405	0.99	+	0	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	exon	17142270	17142405	.	+	.	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	intron	17142406	17142492	.	+	.	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	CDS	17142493	17142594	0.95	+	2	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	exon	17142493	17142594	.	+	.	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	intron	17142595	17142700	.	+	.	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	CDS	17142701	17142744	0.99	+	2	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	exon	17142701	17142744	.	+	.	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
Ledus.S1	AUGUSTUS	stop_codon	17142745	17142747	.	+	0	transcript_id "Ledus.S1G186700.t1"; gene_id "Ledus.S1G186700"
# This transcript jg3461.t2 is derived from g896.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3462.t1 is derived from g897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8497449	8498720	.	-	.	Ledus.S1G088300
Ledus.S1	AUGUSTUS	transcript	8497449	8498720	.	-	.	transcript_id "Ledus.S1G088300.t1"; gene_id "Ledus.S1G088300"
Ledus.S1	AUGUSTUS	stop_codon	8497446	8497448	.	-	0	transcript_id "Ledus.S1G088300.t1"; gene_id "Ledus.S1G088300"
Ledus.S1	AUGUSTUS	CDS	8497449	8498720	0.32	-	0	transcript_id "Ledus.S1G088300.t1"; gene_id "Ledus.S1G088300"
Ledus.S1	AUGUSTUS	exon	8497449	8498720	.	-	.	transcript_id "Ledus.S1G088300.t1"; gene_id "Ledus.S1G088300"
Ledus.S1	AUGUSTUS	start_codon	8498718	8498720	.	-	0	transcript_id "Ledus.S1G088300.t1"; gene_id "Ledus.S1G088300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9537.t1 is derived from g10567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7624030	7625436	.	+	.	Ledus.S3G101400
Ledus.S3	AUGUSTUS	transcript	7624030	7625436	.	+	.	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	start_codon	7624030	7624032	.	+	0	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	CDS	7624030	7624635	0.91	+	0	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	exon	7624030	7624635	.	+	.	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	intron	7624636	7624724	.	+	.	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	CDS	7624725	7624994	1	+	0	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	exon	7624725	7624994	.	+	.	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	intron	7624995	7625075	.	+	.	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	CDS	7625076	7625246	1	+	0	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	exon	7625076	7625246	.	+	.	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	intron	7625247	7625352	.	+	.	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	CDS	7625353	7625436	0.54	+	0	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	exon	7625353	7625436	.	+	.	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
Ledus.S3	AUGUSTUS	stop_codon	7625437	7625439	.	+	0	transcript_id "Ledus.S3G101400.t1"; gene_id "Ledus.S3G101400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9348.t1 is derived from g10378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6300068	6303222	.	+	.	Ledus.S3G082500
Ledus.S3	AUGUSTUS	transcript	6300068	6303222	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	start_codon	6300068	6300070	.	+	0	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	CDS	6300068	6300671	0.69	+	0	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	exon	6300068	6300671	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	intron	6300672	6300752	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	CDS	6300753	6301709	0.87	+	2	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	exon	6300753	6301709	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	intron	6301710	6301977	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	CDS	6301978	6302133	1	+	2	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	exon	6301978	6302133	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	intron	6302134	6302222	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	CDS	6302223	6302289	1	+	2	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	exon	6302223	6302289	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	intron	6302290	6302435	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	CDS	6302436	6302612	0.94	+	1	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	exon	6302436	6302612	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	intron	6302613	6302733	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	CDS	6302734	6303053	0.99	+	1	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	exon	6302734	6303053	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	intron	6303054	6303190	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	CDS	6303191	6303222	1	+	2	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	exon	6303191	6303222	.	+	.	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
Ledus.S3	AUGUSTUS	stop_codon	6303223	6303225	.	+	0	transcript_id "Ledus.S3G082500.t1"; gene_id "Ledus.S3G082500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1170.t1 is derived from g8031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8134283	8137024	.	+	.	Ledus.S2G105200
Ledus.S2	AUGUSTUS	transcript	8134283	8137024	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	start_codon	8134283	8134285	.	+	0	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8134283	8134306	0.98	+	0	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8134283	8134306	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	intron	8134307	8134401	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8134402	8134504	1	+	0	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8134402	8134504	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	intron	8134505	8134669	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8134670	8134856	1	+	2	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8134670	8134856	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	intron	8134857	8134939	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8134940	8135086	1	+	1	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8134940	8135086	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	intron	8135087	8135177	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8135178	8135259	1	+	1	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8135178	8135259	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	intron	8135260	8135392	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8135393	8135548	1	+	0	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8135393	8135548	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	intron	8135549	8135659	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8135660	8135833	1	+	0	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8135660	8135833	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	intron	8135834	8135931	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8135932	8136003	1	+	0	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8135932	8136003	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	intron	8136004	8136181	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8136182	8136253	1	+	0	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8136182	8136253	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	intron	8136254	8136337	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8136338	8136456	1	+	0	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8136338	8136456	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	intron	8136457	8136557	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8136558	8136643	1	+	1	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8136558	8136643	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	intron	8136644	8136733	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8136734	8136828	1	+	2	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8136734	8136828	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	intron	8136829	8136946	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	CDS	8136947	8137024	1	+	0	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	exon	8136947	8137024	.	+	.	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
Ledus.S2	AUGUSTUS	stop_codon	8137025	8137027	.	+	0	transcript_id "Ledus.S2G105200.t1"; gene_id "Ledus.S2G105200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3727.t1 is derived from g1163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11201581	11203467	.	-	.	Ledus.S1G114800
Ledus.S1	AUGUSTUS	transcript	11201581	11203467	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	stop_codon	11201578	11201580	.	-	0	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	CDS	11201581	11201600	0.33	-	2	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	exon	11201581	11201600	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	intron	11201601	11201870	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	CDS	11201871	11202065	0.48	-	2	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	exon	11201871	11202065	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	intron	11202066	11202163	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	CDS	11202164	11202266	1	-	0	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	exon	11202164	11202266	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	intron	11202267	11202358	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	CDS	11202359	11202451	1	-	0	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	exon	11202359	11202451	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	intron	11202452	11202624	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	CDS	11202625	11202757	1	-	1	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	exon	11202625	11202757	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	intron	11202758	11202846	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	CDS	11202847	11202935	1	-	0	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	exon	11202847	11202935	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	intron	11202936	11203011	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	CDS	11203012	11203174	0.97	-	1	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	exon	11203012	11203174	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	intron	11203175	11203255	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	CDS	11203256	11203467	0.98	-	0	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	exon	11203256	11203467	.	-	.	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
Ledus.S1	AUGUSTUS	start_codon	11203465	11203467	.	-	0	transcript_id "Ledus.S1G114800.t1"; gene_id "Ledus.S1G114800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6335.t1 is derived from g3778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30572007	30573251	.	+	.	Ledus.S1G375600
Ledus.S1	AUGUSTUS	transcript	30572007	30573251	.	+	.	transcript_id "Ledus.S1G375600.t1"; gene_id "Ledus.S1G375600"
Ledus.S1	AUGUSTUS	start_codon	30572007	30572009	.	+	0	transcript_id "Ledus.S1G375600.t1"; gene_id "Ledus.S1G375600"
Ledus.S1	AUGUSTUS	CDS	30572007	30573251	0.98	+	0	transcript_id "Ledus.S1G375600.t1"; gene_id "Ledus.S1G375600"
Ledus.S1	AUGUSTUS	exon	30572007	30573251	.	+	.	transcript_id "Ledus.S1G375600.t1"; gene_id "Ledus.S1G375600"
Ledus.S1	AUGUSTUS	stop_codon	30573252	30573254	.	+	0	transcript_id "Ledus.S1G375600.t1"; gene_id "Ledus.S1G375600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg276.t1 is derived from g7137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1361004	1361472	.	-	.	Ledus.S2G015800
Ledus.S2	AUGUSTUS	transcript	1361004	1361472	.	-	.	transcript_id "Ledus.S2G015800.t1"; gene_id "Ledus.S2G015800"
Ledus.S2	AUGUSTUS	stop_codon	1361001	1361003	.	-	0	transcript_id "Ledus.S2G015800.t1"; gene_id "Ledus.S2G015800"
Ledus.S2	AUGUSTUS	CDS	1361004	1361051	0.71	-	0	transcript_id "Ledus.S2G015800.t1"; gene_id "Ledus.S2G015800"
Ledus.S2	AUGUSTUS	exon	1361004	1361051	.	-	.	transcript_id "Ledus.S2G015800.t1"; gene_id "Ledus.S2G015800"
Ledus.S2	AUGUSTUS	intron	1361052	1361208	.	-	.	transcript_id "Ledus.S2G015800.t1"; gene_id "Ledus.S2G015800"
Ledus.S2	AUGUSTUS	CDS	1361209	1361472	0.42	-	0	transcript_id "Ledus.S2G015800.t1"; gene_id "Ledus.S2G015800"
Ledus.S2	AUGUSTUS	exon	1361209	1361472	.	-	.	transcript_id "Ledus.S2G015800.t1"; gene_id "Ledus.S2G015800"
Ledus.S2	AUGUSTUS	start_codon	1361470	1361472	.	-	0	transcript_id "Ledus.S2G015800.t1"; gene_id "Ledus.S2G015800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10849.t1 is derived from g4467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	71980	73824	.	-	.	Ledus.S4G000500
Ledus.S4	AUGUSTUS	transcript	71980	73824	.	-	.	transcript_id "Ledus.S4G000500.t1"; gene_id "Ledus.S4G000500"
Ledus.S4	AUGUSTUS	stop_codon	71977	71979	.	-	0	transcript_id "Ledus.S4G000500.t1"; gene_id "Ledus.S4G000500"
Ledus.S4	AUGUSTUS	CDS	71980	73824	0.53	-	0	transcript_id "Ledus.S4G000500.t1"; gene_id "Ledus.S4G000500"
Ledus.S4	AUGUSTUS	exon	71980	73824	.	-	.	transcript_id "Ledus.S4G000500.t1"; gene_id "Ledus.S4G000500"
Ledus.S4	AUGUSTUS	start_codon	73822	73824	.	-	0	transcript_id "Ledus.S4G000500.t1"; gene_id "Ledus.S4G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8457.t1 is derived from g13129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11788358	11788919	.	-	.	Ledus.S5G123500
Ledus.S5	AUGUSTUS	transcript	11788358	11788919	.	-	.	transcript_id "Ledus.S5G123500.t1"; gene_id "Ledus.S5G123500"
Ledus.S5	AUGUSTUS	stop_codon	11788355	11788357	.	-	0	transcript_id "Ledus.S5G123500.t1"; gene_id "Ledus.S5G123500"
Ledus.S5	AUGUSTUS	CDS	11788358	11788423	1	-	0	transcript_id "Ledus.S5G123500.t1"; gene_id "Ledus.S5G123500"
Ledus.S5	AUGUSTUS	exon	11788358	11788423	.	-	.	transcript_id "Ledus.S5G123500.t1"; gene_id "Ledus.S5G123500"
Ledus.S5	AUGUSTUS	intron	11788424	11788693	.	-	.	transcript_id "Ledus.S5G123500.t1"; gene_id "Ledus.S5G123500"
Ledus.S5	AUGUSTUS	CDS	11788694	11788719	0.76	-	2	transcript_id "Ledus.S5G123500.t1"; gene_id "Ledus.S5G123500"
Ledus.S5	AUGUSTUS	exon	11788694	11788719	.	-	.	transcript_id "Ledus.S5G123500.t1"; gene_id "Ledus.S5G123500"
Ledus.S5	AUGUSTUS	intron	11788720	11788807	.	-	.	transcript_id "Ledus.S5G123500.t1"; gene_id "Ledus.S5G123500"
Ledus.S5	AUGUSTUS	CDS	11788808	11788919	0.66	-	0	transcript_id "Ledus.S5G123500.t1"; gene_id "Ledus.S5G123500"
Ledus.S5	AUGUSTUS	exon	11788808	11788919	.	-	.	transcript_id "Ledus.S5G123500.t1"; gene_id "Ledus.S5G123500"
Ledus.S5	AUGUSTUS	start_codon	11788917	11788919	.	-	0	transcript_id "Ledus.S5G123500.t1"; gene_id "Ledus.S5G123500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9711.t1 is derived from g10741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9238317	9239340	.	-	.	Ledus.S3G118800
Ledus.S3	AUGUSTUS	transcript	9238317	9239340	.	-	.	transcript_id "Ledus.S3G118800.t1"; gene_id "Ledus.S3G118800"
Ledus.S3	AUGUSTUS	stop_codon	9238314	9238316	.	-	0	transcript_id "Ledus.S3G118800.t1"; gene_id "Ledus.S3G118800"
Ledus.S3	AUGUSTUS	CDS	9238317	9239038	0.52	-	2	transcript_id "Ledus.S3G118800.t1"; gene_id "Ledus.S3G118800"
Ledus.S3	AUGUSTUS	exon	9238317	9239038	.	-	.	transcript_id "Ledus.S3G118800.t1"; gene_id "Ledus.S3G118800"
Ledus.S3	AUGUSTUS	intron	9239039	9239114	.	-	.	transcript_id "Ledus.S3G118800.t1"; gene_id "Ledus.S3G118800"
Ledus.S3	AUGUSTUS	CDS	9239115	9239340	0.37	-	0	transcript_id "Ledus.S3G118800.t1"; gene_id "Ledus.S3G118800"
Ledus.S3	AUGUSTUS	exon	9239115	9239340	.	-	.	transcript_id "Ledus.S3G118800.t1"; gene_id "Ledus.S3G118800"
Ledus.S3	AUGUSTUS	start_codon	9239338	9239340	.	-	0	transcript_id "Ledus.S3G118800.t1"; gene_id "Ledus.S3G118800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1299.t1 is derived from g8160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9170921	9173445	.	-	.	Ledus.S2G118100
Ledus.S2	AUGUSTUS	transcript	9170921	9173445	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	stop_codon	9170918	9170920	.	-	0	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9170921	9171172	0.79	-	0	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9170921	9171172	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	intron	9171173	9171317	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9171318	9171354	0.68	-	1	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9171318	9171354	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	intron	9171355	9171437	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9171438	9171511	0.57	-	0	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9171438	9171511	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	intron	9171512	9171595	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9171596	9171673	1	-	0	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9171596	9171673	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	intron	9171674	9171740	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9171741	9171822	1	-	1	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9171741	9171822	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	intron	9171823	9171927	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9171928	9171999	1	-	1	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9171928	9171999	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	intron	9172000	9172076	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9172077	9172198	1	-	0	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9172077	9172198	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	intron	9172199	9172272	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9172273	9172328	1	-	2	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9172273	9172328	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	intron	9172329	9172415	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9172416	9172485	1	-	0	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9172416	9172485	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	intron	9172486	9172565	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9172566	9172649	1	-	0	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9172566	9172649	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	intron	9172650	9172731	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9172732	9172874	0.81	-	2	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9172732	9172874	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	intron	9172875	9172982	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9172983	9173094	0.81	-	0	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9172983	9173094	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	intron	9173095	9173175	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	CDS	9173176	9173445	1	-	0	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	exon	9173176	9173445	.	-	.	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
Ledus.S2	AUGUSTUS	start_codon	9173443	9173445	.	-	0	transcript_id "Ledus.S2G118100.t1"; gene_id "Ledus.S2G118100"
# This transcript jg3225.t2 is derived from g660.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3226.t1 is derived from g661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6988186	6996678	.	+	.	Ledus.S1G064700
Ledus.S1	AUGUSTUS	transcript	6988186	6996678	.	+	.	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	start_codon	6988186	6988188	.	+	0	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	CDS	6988186	6988218	0.78	+	0	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	exon	6988186	6988218	.	+	.	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	intron	6988219	6988388	.	+	.	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	CDS	6988389	6988459	0.87	+	0	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	exon	6988389	6988459	.	+	.	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	intron	6988460	6988531	.	+	.	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	CDS	6988532	6988680	0.32	+	1	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	exon	6988532	6988680	.	+	.	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	intron	6988681	6988834	.	+	.	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	CDS	6988835	6996678	0.48	+	2	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	exon	6988835	6996678	.	+	.	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
Ledus.S1	AUGUSTUS	stop_codon	6996679	6996681	.	+	0	transcript_id "Ledus.S1G064700.t1"; gene_id "Ledus.S1G064700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9364.t1 is derived from g10394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6385946	6386176	.	-	.	Ledus.S3G084100
Ledus.S3	AUGUSTUS	transcript	6385946	6386176	.	-	.	transcript_id "Ledus.S3G084100.t1"; gene_id "Ledus.S3G084100"
Ledus.S3	AUGUSTUS	stop_codon	6385943	6385945	.	-	0	transcript_id "Ledus.S3G084100.t1"; gene_id "Ledus.S3G084100"
Ledus.S3	AUGUSTUS	CDS	6385946	6386176	0.85	-	0	transcript_id "Ledus.S3G084100.t1"; gene_id "Ledus.S3G084100"
Ledus.S3	AUGUSTUS	exon	6385946	6386176	.	-	.	transcript_id "Ledus.S3G084100.t1"; gene_id "Ledus.S3G084100"
Ledus.S3	AUGUSTUS	start_codon	6386174	6386176	.	-	0	transcript_id "Ledus.S3G084100.t1"; gene_id "Ledus.S3G084100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9188.t1 is derived from g10218.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5291813	5293339	.	+	.	Ledus.S3G066500
Ledus.S3	AUGUSTUS	transcript	5291813	5293339	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	start_codon	5291813	5291815	.	+	0	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	CDS	5291813	5291938	0.94	+	0	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	exon	5291813	5291938	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	intron	5291939	5292015	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	CDS	5292016	5292089	0.95	+	0	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	exon	5292016	5292089	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	intron	5292090	5292197	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	CDS	5292198	5292279	0.89	+	1	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	exon	5292198	5292279	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	intron	5292280	5292392	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	CDS	5292393	5292443	0.91	+	0	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	exon	5292393	5292443	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	intron	5292444	5292556	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	CDS	5292557	5292657	0.96	+	0	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	exon	5292557	5292657	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	intron	5292658	5292738	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	CDS	5292739	5292892	1	+	1	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	exon	5292739	5292892	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	intron	5292893	5292975	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	CDS	5292976	5293140	1	+	0	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	exon	5292976	5293140	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	intron	5293141	5293228	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	CDS	5293229	5293339	0.99	+	0	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	exon	5293229	5293339	.	+	.	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
Ledus.S3	AUGUSTUS	stop_codon	5293340	5293342	.	+	0	transcript_id "Ledus.S3G066500.t1"; gene_id "Ledus.S3G066500"
# This transcript jg5540.t2 is derived from g2979.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5541.t1 is derived from g2980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25045898	25048597	.	+	.	Ledus.S1G296200
Ledus.S1	AUGUSTUS	transcript	25045898	25048597	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	start_codon	25045898	25045900	.	+	0	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	CDS	25045898	25045901	0.96	+	0	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	exon	25045898	25045901	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	intron	25045902	25045974	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	CDS	25045975	25046419	0.81	+	2	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	exon	25045975	25046419	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	intron	25046420	25046513	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	CDS	25046514	25046587	1	+	1	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	exon	25046514	25046587	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	intron	25046588	25046686	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	CDS	25046687	25046763	1	+	2	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	exon	25046687	25046763	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	intron	25046764	25046922	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	CDS	25046923	25046994	1	+	0	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	exon	25046923	25046994	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	intron	25046995	25047257	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	CDS	25047258	25047326	1	+	0	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	exon	25047258	25047326	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	intron	25047327	25047464	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	CDS	25047465	25047511	1	+	0	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	exon	25047465	25047511	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	intron	25047512	25047662	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	CDS	25047663	25047795	1	+	1	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	exon	25047663	25047795	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	intron	25047796	25047910	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	CDS	25047911	25047979	0.94	+	0	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	exon	25047911	25047979	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	intron	25047980	25048084	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	CDS	25048085	25048188	1	+	0	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	exon	25048085	25048188	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	intron	25048189	25048268	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	CDS	25048269	25048344	0.95	+	1	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	exon	25048269	25048344	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	intron	25048345	25048453	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	CDS	25048454	25048597	0.95	+	0	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	exon	25048454	25048597	.	+	.	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
Ledus.S1	AUGUSTUS	stop_codon	25048598	25048600	.	+	0	transcript_id "Ledus.S1G296200.t1"; gene_id "Ledus.S1G296200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg833.t1 is derived from g7694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5520271	5521287	.	+	.	Ledus.S2G071500
Ledus.S2	AUGUSTUS	transcript	5520271	5521287	.	+	.	transcript_id "Ledus.S2G071500.t1"; gene_id "Ledus.S2G071500"
Ledus.S2	AUGUSTUS	start_codon	5520271	5520273	.	+	0	transcript_id "Ledus.S2G071500.t1"; gene_id "Ledus.S2G071500"
Ledus.S2	AUGUSTUS	CDS	5520271	5521287	0.99	+	0	transcript_id "Ledus.S2G071500.t1"; gene_id "Ledus.S2G071500"
Ledus.S2	AUGUSTUS	exon	5520271	5521287	.	+	.	transcript_id "Ledus.S2G071500.t1"; gene_id "Ledus.S2G071500"
Ledus.S2	AUGUSTUS	stop_codon	5521288	5521290	.	+	0	transcript_id "Ledus.S2G071500.t1"; gene_id "Ledus.S2G071500"
# This transcript jg12425.t2 is derived from g6046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12426.t1 is derived from g6047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11969098	11970935	.	+	.	Ledus.S4G158200
Ledus.S4	AUGUSTUS	transcript	11969098	11970935	.	+	.	transcript_id "Ledus.S4G158200.t1"; gene_id "Ledus.S4G158200"
Ledus.S4	AUGUSTUS	start_codon	11969098	11969100	.	+	0	transcript_id "Ledus.S4G158200.t1"; gene_id "Ledus.S4G158200"
Ledus.S4	AUGUSTUS	CDS	11969098	11970531	1	+	0	transcript_id "Ledus.S4G158200.t1"; gene_id "Ledus.S4G158200"
Ledus.S4	AUGUSTUS	exon	11969098	11970531	.	+	.	transcript_id "Ledus.S4G158200.t1"; gene_id "Ledus.S4G158200"
Ledus.S4	AUGUSTUS	intron	11970532	11970650	.	+	.	transcript_id "Ledus.S4G158200.t1"; gene_id "Ledus.S4G158200"
Ledus.S4	AUGUSTUS	CDS	11970651	11970935	0.61	+	0	transcript_id "Ledus.S4G158200.t1"; gene_id "Ledus.S4G158200"
Ledus.S4	AUGUSTUS	exon	11970651	11970935	.	+	.	transcript_id "Ledus.S4G158200.t1"; gene_id "Ledus.S4G158200"
Ledus.S4	AUGUSTUS	stop_codon	11970936	11970938	.	+	0	transcript_id "Ledus.S4G158200.t1"; gene_id "Ledus.S4G158200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2862.t1 is derived from g296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4235031	4236251	.	+	.	Ledus.S1G028300
Ledus.S1	AUGUSTUS	transcript	4235031	4236251	.	+	.	transcript_id "Ledus.S1G028300.t1"; gene_id "Ledus.S1G028300"
Ledus.S1	AUGUSTUS	start_codon	4235031	4235033	.	+	0	transcript_id "Ledus.S1G028300.t1"; gene_id "Ledus.S1G028300"
Ledus.S1	AUGUSTUS	CDS	4235031	4236251	0.64	+	0	transcript_id "Ledus.S1G028300.t1"; gene_id "Ledus.S1G028300"
Ledus.S1	AUGUSTUS	exon	4235031	4236251	.	+	.	transcript_id "Ledus.S1G028300.t1"; gene_id "Ledus.S1G028300"
Ledus.S1	AUGUSTUS	stop_codon	4236252	4236254	.	+	0	transcript_id "Ledus.S1G028300.t1"; gene_id "Ledus.S1G028300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2698.t1 is derived from g131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2076544	2077737	.	+	.	Ledus.S1G011900
Ledus.S1	AUGUSTUS	transcript	2076544	2077737	.	+	.	transcript_id "Ledus.S1G011900.t1"; gene_id "Ledus.S1G011900"
Ledus.S1	AUGUSTUS	start_codon	2076544	2076546	.	+	0	transcript_id "Ledus.S1G011900.t1"; gene_id "Ledus.S1G011900"
Ledus.S1	AUGUSTUS	CDS	2076544	2076900	0.87	+	0	transcript_id "Ledus.S1G011900.t1"; gene_id "Ledus.S1G011900"
Ledus.S1	AUGUSTUS	exon	2076544	2076900	.	+	.	transcript_id "Ledus.S1G011900.t1"; gene_id "Ledus.S1G011900"
Ledus.S1	AUGUSTUS	intron	2076901	2076973	.	+	.	transcript_id "Ledus.S1G011900.t1"; gene_id "Ledus.S1G011900"
Ledus.S1	AUGUSTUS	CDS	2076974	2077029	1	+	0	transcript_id "Ledus.S1G011900.t1"; gene_id "Ledus.S1G011900"
Ledus.S1	AUGUSTUS	exon	2076974	2077029	.	+	.	transcript_id "Ledus.S1G011900.t1"; gene_id "Ledus.S1G011900"
Ledus.S1	AUGUSTUS	intron	2077030	2077124	.	+	.	transcript_id "Ledus.S1G011900.t1"; gene_id "Ledus.S1G011900"
Ledus.S1	AUGUSTUS	CDS	2077125	2077737	1	+	1	transcript_id "Ledus.S1G011900.t1"; gene_id "Ledus.S1G011900"
Ledus.S1	AUGUSTUS	exon	2077125	2077737	.	+	.	transcript_id "Ledus.S1G011900.t1"; gene_id "Ledus.S1G011900"
Ledus.S1	AUGUSTUS	stop_codon	2077738	2077740	.	+	0	transcript_id "Ledus.S1G011900.t1"; gene_id "Ledus.S1G011900"
# This transcript jg7993.t2 is derived from g12664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7994.t1 is derived from g12665.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8381485	8382933	.	-	.	Ledus.S5G077200
Ledus.S5	AUGUSTUS	transcript	8381485	8382933	.	-	.	transcript_id "Ledus.S5G077200.t1"; gene_id "Ledus.S5G077200"
Ledus.S5	AUGUSTUS	stop_codon	8381482	8381484	.	-	0	transcript_id "Ledus.S5G077200.t1"; gene_id "Ledus.S5G077200"
Ledus.S5	AUGUSTUS	CDS	8381485	8382933	0.87	-	0	transcript_id "Ledus.S5G077200.t1"; gene_id "Ledus.S5G077200"
Ledus.S5	AUGUSTUS	exon	8381485	8382933	.	-	.	transcript_id "Ledus.S5G077200.t1"; gene_id "Ledus.S5G077200"
Ledus.S5	AUGUSTUS	start_codon	8382931	8382933	.	-	0	transcript_id "Ledus.S5G077200.t1"; gene_id "Ledus.S5G077200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3533.t1 is derived from g969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9314025	9316419	.	+	.	Ledus.S1G095400
Ledus.S1	AUGUSTUS	transcript	9314025	9316419	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	start_codon	9314025	9314027	.	+	0	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	CDS	9314025	9314049	0.51	+	0	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	exon	9314025	9314049	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	intron	9314050	9314146	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	CDS	9314147	9314481	0.95	+	2	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	exon	9314147	9314481	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	intron	9314482	9314563	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	CDS	9314564	9314942	0.95	+	0	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	exon	9314564	9314942	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	intron	9314943	9315026	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	CDS	9315027	9315167	0.94	+	2	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	exon	9315027	9315167	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	intron	9315168	9315246	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	CDS	9315247	9315602	0.67	+	2	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	exon	9315247	9315602	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	intron	9315603	9315763	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	CDS	9315764	9316222	1	+	0	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	exon	9315764	9316222	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	intron	9316223	9316335	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	CDS	9316336	9316419	0.99	+	0	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	exon	9316336	9316419	.	+	.	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
Ledus.S1	AUGUSTUS	stop_codon	9316420	9316422	.	+	0	transcript_id "Ledus.S1G095400.t1"; gene_id "Ledus.S1G095400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12379.t1 is derived from g6000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11555256	11555877	.	+	.	Ledus.S4G153500
Ledus.S4	AUGUSTUS	transcript	11555256	11555877	.	+	.	transcript_id "Ledus.S4G153500.t1"; gene_id "Ledus.S4G153500"
Ledus.S4	AUGUSTUS	start_codon	11555256	11555258	.	+	0	transcript_id "Ledus.S4G153500.t1"; gene_id "Ledus.S4G153500"
Ledus.S4	AUGUSTUS	CDS	11555256	11555476	0.53	+	0	transcript_id "Ledus.S4G153500.t1"; gene_id "Ledus.S4G153500"
Ledus.S4	AUGUSTUS	exon	11555256	11555476	.	+	.	transcript_id "Ledus.S4G153500.t1"; gene_id "Ledus.S4G153500"
Ledus.S4	AUGUSTUS	intron	11555477	11555615	.	+	.	transcript_id "Ledus.S4G153500.t1"; gene_id "Ledus.S4G153500"
Ledus.S4	AUGUSTUS	CDS	11555616	11555877	0.81	+	1	transcript_id "Ledus.S4G153500.t1"; gene_id "Ledus.S4G153500"
Ledus.S4	AUGUSTUS	exon	11555616	11555877	.	+	.	transcript_id "Ledus.S4G153500.t1"; gene_id "Ledus.S4G153500"
Ledus.S4	AUGUSTUS	stop_codon	11555878	11555880	.	+	0	transcript_id "Ledus.S4G153500.t1"; gene_id "Ledus.S4G153500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8793.t1 is derived from g9823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2020118	2021191	.	-	.	Ledus.S3G027000
Ledus.S3	AUGUSTUS	transcript	2020118	2021191	.	-	.	transcript_id "Ledus.S3G027000.t1"; gene_id "Ledus.S3G027000"
Ledus.S3	AUGUSTUS	stop_codon	2020115	2020117	.	-	0	transcript_id "Ledus.S3G027000.t1"; gene_id "Ledus.S3G027000"
Ledus.S3	AUGUSTUS	CDS	2020118	2021191	0.65	-	0	transcript_id "Ledus.S3G027000.t1"; gene_id "Ledus.S3G027000"
Ledus.S3	AUGUSTUS	exon	2020118	2021191	.	-	.	transcript_id "Ledus.S3G027000.t1"; gene_id "Ledus.S3G027000"
Ledus.S3	AUGUSTUS	start_codon	2021189	2021191	.	-	0	transcript_id "Ledus.S3G027000.t1"; gene_id "Ledus.S3G027000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4442.t1 is derived from g1878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17133574	17135556	.	-	.	Ledus.S1G186300
Ledus.S1	AUGUSTUS	transcript	17133574	17135556	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	stop_codon	17133571	17133573	.	-	0	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	CDS	17133574	17133633	1	-	0	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	exon	17133574	17133633	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	intron	17133634	17133724	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	CDS	17133725	17133790	1	-	0	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	exon	17133725	17133790	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	intron	17133791	17133908	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	CDS	17133909	17134005	1	-	1	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	exon	17133909	17134005	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	intron	17134006	17134106	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	CDS	17134107	17134188	1	-	2	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	exon	17134107	17134188	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	intron	17134189	17134267	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	CDS	17134268	17134451	1	-	0	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	exon	17134268	17134451	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	intron	17134452	17134528	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	CDS	17134529	17134625	1	-	1	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	exon	17134529	17134625	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	intron	17134626	17134727	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	CDS	17134728	17134969	1	-	0	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	exon	17134728	17134969	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	intron	17134970	17135103	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	CDS	17135104	17135556	0.83	-	0	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	exon	17135104	17135556	.	-	.	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
Ledus.S1	AUGUSTUS	start_codon	17135554	17135556	.	-	0	transcript_id "Ledus.S1G186300.t1"; gene_id "Ledus.S1G186300"
# This transcript jg9247.t2 is derived from g10277.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9248.t1 is derived from g10278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5609081	5610532	.	-	.	Ledus.S3G072500
Ledus.S3	AUGUSTUS	transcript	5609081	5610532	.	-	.	transcript_id "Ledus.S3G072500.t1"; gene_id "Ledus.S3G072500"
Ledus.S3	AUGUSTUS	stop_codon	5609078	5609080	.	-	0	transcript_id "Ledus.S3G072500.t1"; gene_id "Ledus.S3G072500"
Ledus.S3	AUGUSTUS	CDS	5609081	5610532	0.84	-	0	transcript_id "Ledus.S3G072500.t1"; gene_id "Ledus.S3G072500"
Ledus.S3	AUGUSTUS	exon	5609081	5610532	.	-	.	transcript_id "Ledus.S3G072500.t1"; gene_id "Ledus.S3G072500"
Ledus.S3	AUGUSTUS	start_codon	5610530	5610532	.	-	0	transcript_id "Ledus.S3G072500.t1"; gene_id "Ledus.S3G072500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg826.t1 is derived from g7687.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5326724	5327056	.	+	.	Ledus.S2G070800
Ledus.S2	AUGUSTUS	transcript	5326724	5327056	.	+	.	transcript_id "Ledus.S2G070800.t1"; gene_id "Ledus.S2G070800"
Ledus.S2	AUGUSTUS	start_codon	5326724	5326726	.	+	0	transcript_id "Ledus.S2G070800.t1"; gene_id "Ledus.S2G070800"
Ledus.S2	AUGUSTUS	CDS	5326724	5327056	0.5	+	0	transcript_id "Ledus.S2G070800.t1"; gene_id "Ledus.S2G070800"
Ledus.S2	AUGUSTUS	exon	5326724	5327056	.	+	.	transcript_id "Ledus.S2G070800.t1"; gene_id "Ledus.S2G070800"
Ledus.S2	AUGUSTUS	stop_codon	5327057	5327059	.	+	0	transcript_id "Ledus.S2G070800.t1"; gene_id "Ledus.S2G070800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7083.t1 is derived from g6614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1374595	1375982	.	+	.	Ledus.C7G014400
Ledus.C7	AUGUSTUS	transcript	1374595	1375982	.	+	.	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	start_codon	1374595	1374597	.	+	0	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	CDS	1374595	1374626	0.58	+	0	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	exon	1374595	1374626	.	+	.	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	intron	1374627	1374724	.	+	.	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	CDS	1374725	1374884	0.98	+	1	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	exon	1374725	1374884	.	+	.	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	intron	1374885	1375216	.	+	.	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	CDS	1375217	1375409	0.58	+	0	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	exon	1375217	1375409	.	+	.	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	intron	1375410	1375687	.	+	.	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	CDS	1375688	1375728	0.73	+	2	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	exon	1375688	1375728	.	+	.	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	intron	1375729	1375958	.	+	.	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	CDS	1375959	1375982	0.82	+	0	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	exon	1375959	1375982	.	+	.	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
Ledus.C7	AUGUSTUS	stop_codon	1375983	1375985	.	+	0	transcript_id "Ledus.C7G014400.t1"; gene_id "Ledus.C7G014400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11927.t1 is derived from g5546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7840857	7844955	.	-	.	Ledus.S4G108300
Ledus.S4	AUGUSTUS	transcript	7840857	7844955	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	stop_codon	7840854	7840856	.	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7840857	7841051	0.99	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7840857	7841051	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7841052	7841148	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7841149	7841205	1	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7841149	7841205	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7841206	7841286	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7841287	7841398	1	-	1	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7841287	7841398	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7841399	7841479	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7841480	7841550	1	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7841480	7841550	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7841551	7841644	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7841645	7841797	1	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7841645	7841797	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7841798	7841883	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7841884	7841975	0.74	-	2	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7841884	7841975	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7841976	7842370	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7842371	7842453	0.99	-	1	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7842371	7842453	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7842454	7842540	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7842541	7842578	1	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7842541	7842578	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7842579	7842673	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7842674	7842784	1	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7842674	7842784	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7842785	7842869	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7842870	7843070	1	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7842870	7843070	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7843071	7843240	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7843241	7843360	1	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7843241	7843360	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7843361	7843562	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7843563	7843619	1	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7843563	7843619	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7843620	7843768	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7843769	7843840	0.96	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7843769	7843840	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7843841	7843950	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7843951	7844034	1	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7843951	7844034	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7844035	7844148	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7844149	7844259	1	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7844149	7844259	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7844260	7844403	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7844404	7844485	1	-	1	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7844404	7844485	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	intron	7844486	7844614	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	CDS	7844615	7844955	1	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	exon	7844615	7844955	.	-	.	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
Ledus.S4	AUGUSTUS	start_codon	7844953	7844955	.	-	0	transcript_id "Ledus.S4G108300.t1"; gene_id "Ledus.S4G108300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11422.t1 is derived from g5040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4174298	4175557	.	-	.	Ledus.S4G057800
Ledus.S4	AUGUSTUS	transcript	4174298	4175557	.	-	.	transcript_id "Ledus.S4G057800.t1"; gene_id "Ledus.S4G057800"
Ledus.S4	AUGUSTUS	stop_codon	4174295	4174297	.	-	0	transcript_id "Ledus.S4G057800.t1"; gene_id "Ledus.S4G057800"
Ledus.S4	AUGUSTUS	CDS	4174298	4174874	1	-	1	transcript_id "Ledus.S4G057800.t1"; gene_id "Ledus.S4G057800"
Ledus.S4	AUGUSTUS	exon	4174298	4174874	.	-	.	transcript_id "Ledus.S4G057800.t1"; gene_id "Ledus.S4G057800"
Ledus.S4	AUGUSTUS	intron	4174875	4174958	.	-	.	transcript_id "Ledus.S4G057800.t1"; gene_id "Ledus.S4G057800"
Ledus.S4	AUGUSTUS	CDS	4174959	4175149	0.99	-	0	transcript_id "Ledus.S4G057800.t1"; gene_id "Ledus.S4G057800"
Ledus.S4	AUGUSTUS	exon	4174959	4175149	.	-	.	transcript_id "Ledus.S4G057800.t1"; gene_id "Ledus.S4G057800"
Ledus.S4	AUGUSTUS	intron	4175150	4175218	.	-	.	transcript_id "Ledus.S4G057800.t1"; gene_id "Ledus.S4G057800"
Ledus.S4	AUGUSTUS	CDS	4175219	4175557	1	-	0	transcript_id "Ledus.S4G057800.t1"; gene_id "Ledus.S4G057800"
Ledus.S4	AUGUSTUS	exon	4175219	4175557	.	-	.	transcript_id "Ledus.S4G057800.t1"; gene_id "Ledus.S4G057800"
Ledus.S4	AUGUSTUS	start_codon	4175555	4175557	.	-	0	transcript_id "Ledus.S4G057800.t1"; gene_id "Ledus.S4G057800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1086.t1 is derived from g7947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7451501	7455512	.	-	.	Ledus.S2G096800
Ledus.S2	AUGUSTUS	transcript	7451501	7455512	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	stop_codon	7451498	7451500	.	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7451501	7451600	0.89	-	1	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7451501	7451600	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7451601	7451677	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7451678	7451734	1	-	1	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7451678	7451734	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7451735	7451836	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7451837	7451937	1	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7451837	7451937	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7451938	7452025	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7452026	7452094	1	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7452026	7452094	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7452095	7452181	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7452182	7452225	0.49	-	2	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7452182	7452225	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7452226	7452335	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7452336	7452390	0.5	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7452336	7452390	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7452391	7452511	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7452512	7452596	0.61	-	1	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7452512	7452596	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7452597	7452726	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7452727	7452830	0.97	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7452727	7452830	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7452831	7452908	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7452909	7452989	1	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7452909	7452989	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7452990	7453072	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7453073	7453123	1	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7453073	7453123	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7453124	7453234	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7453235	7453290	1	-	2	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7453235	7453290	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7453291	7453382	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7453383	7453609	0.46	-	1	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7453383	7453609	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7453610	7453756	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7453757	7453789	0.82	-	1	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7453757	7453789	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7453790	7454049	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7454050	7454201	1	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7454050	7454201	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7454202	7454429	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7454430	7454471	1	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7454430	7454471	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7454472	7454561	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7454562	7454631	1	-	1	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7454562	7454631	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7454632	7454723	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7454724	7454818	1	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7454724	7454818	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7454819	7455015	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7455016	7455075	1	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7455016	7455075	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7455076	7455151	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7455152	7455223	1	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7455152	7455223	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7455224	7455294	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7455295	7455419	0.88	-	2	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7455295	7455419	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	intron	7455420	7455490	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	CDS	7455491	7455512	0.88	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	exon	7455491	7455512	.	-	.	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
Ledus.S2	AUGUSTUS	start_codon	7455510	7455512	.	-	0	transcript_id "Ledus.S2G096800.t1"; gene_id "Ledus.S2G096800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg3740.t1 is derived from g1176.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11455061	11459932	.	+	.	Ledus.S1G116100
Ledus.S1	AUGUSTUS	transcript	11455061	11459932	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	start_codon	11455061	11455063	.	+	0	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455061	11455089	1	+	0	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455061	11455089	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455090	11455167	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455168	11455180	1	+	1	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455168	11455180	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455181	11455223	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455224	11455245	1	+	0	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455224	11455245	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455246	11455518	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455519	11455631	1	+	2	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455519	11455631	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455632	11455856	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455857	11455918	1	+	0	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455857	11455918	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455919	11456108	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11456109	11456196	1	+	1	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11456109	11456196	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11456197	11456324	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11456325	11456386	1	+	0	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11456325	11456386	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11456387	11456473	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11456474	11456561	1	+	1	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11456474	11456561	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11456562	11456652	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11456653	11457153	1	+	0	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11456653	11457153	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11457154	11457288	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11457289	11457723	1	+	0	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11457289	11457723	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11457724	11457801	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11457802	11457924	1	+	0	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11457802	11457924	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11457925	11458022	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11458023	11458130	1	+	0	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11458023	11458130	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11458131	11458282	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11458283	11458369	1	+	0	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11458283	11458369	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11458370	11458650	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11458651	11458822	1	+	0	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11458651	11458822	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11458823	11459053	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11459054	11459093	0.91	+	2	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11459054	11459093	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11459094	11459209	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11459210	11459410	0.84	+	1	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11459210	11459410	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11459411	11459658	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11459659	11459694	0.83	+	1	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11459659	11459694	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11459695	11459793	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11459794	11459932	0.8	+	1	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11459794	11459932	.	+	.	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	stop_codon	11459933	11459935	.	+	0	transcript_id "Ledus.S1G116100.t1"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	transcript	11455061	11459932	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	start_codon	11455061	11455063	.	+	0	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455061	11455089	1	+	0	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455061	11455089	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455090	11455167	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455168	11455180	1	+	1	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455168	11455180	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455181	11455223	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455224	11455245	1	+	0	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455224	11455245	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455246	11455518	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455519	11455631	1	+	2	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455519	11455631	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455632	11455856	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455857	11455918	1	+	0	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455857	11455918	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455919	11456108	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11456109	11456196	1	+	1	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11456109	11456196	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11456197	11456324	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11456325	11456386	1	+	0	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11456325	11456386	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11456387	11456473	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11456474	11456561	1	+	1	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11456474	11456561	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11456562	11456652	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11456653	11457153	1	+	0	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11456653	11457153	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11457154	11457288	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11457289	11457723	0.98	+	0	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11457289	11457723	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11457724	11457801	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11457802	11457924	1	+	0	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11457802	11457924	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11457925	11458022	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11458023	11458130	1	+	0	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11458023	11458130	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11458131	11458282	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11458283	11458369	1	+	0	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11458283	11458369	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11458370	11458650	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11458651	11458822	1	+	0	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11458651	11458822	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11458823	11459050	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11459051	11459093	0.96	+	2	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11459051	11459093	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11459094	11459209	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11459210	11459410	0.8	+	1	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11459210	11459410	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11459411	11459658	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11459659	11459694	0.8	+	1	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11459659	11459694	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11459695	11459793	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11459794	11459932	0.79	+	1	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11459794	11459932	.	+	.	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	stop_codon	11459933	11459935	.	+	0	transcript_id "Ledus.S1G116100.t2"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	transcript	11455061	11459932	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	start_codon	11455061	11455063	.	+	0	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455061	11455089	1	+	0	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455061	11455089	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455090	11455167	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455168	11455180	1	+	1	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455168	11455180	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455181	11455223	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455224	11455245	1	+	0	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455224	11455245	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455246	11455518	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455519	11455631	1	+	2	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455519	11455631	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455632	11455853	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11455854	11455918	0.96	+	0	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11455854	11455918	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11455919	11456108	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11456109	11456196	1	+	1	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11456109	11456196	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11456197	11456324	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11456325	11456386	1	+	0	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11456325	11456386	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11456387	11456473	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11456474	11456561	1	+	1	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11456474	11456561	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11456562	11456652	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11456653	11457153	1	+	0	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11456653	11457153	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11457154	11457288	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11457289	11457723	1	+	0	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11457289	11457723	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11457724	11457801	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11457802	11457924	1	+	0	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11457802	11457924	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11457925	11458022	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11458023	11458130	1	+	0	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11458023	11458130	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11458131	11458282	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11458283	11458369	1	+	0	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11458283	11458369	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11458370	11458650	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11458651	11458822	1	+	0	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11458651	11458822	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11458823	11459053	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11459054	11459093	0.97	+	2	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11459054	11459093	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11459094	11459209	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11459210	11459410	0.78	+	1	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11459210	11459410	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11459411	11459658	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11459659	11459694	0.79	+	1	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11459659	11459694	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	intron	11459695	11459793	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	CDS	11459794	11459932	0.8	+	1	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	exon	11459794	11459932	.	+	.	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
Ledus.S1	AUGUSTUS	stop_codon	11459933	11459935	.	+	0	transcript_id "Ledus.S1G116100.t3"; gene_id "Ledus.S1G116100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5951.t1 is derived from g3394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28023968	28026342	.	+	.	Ledus.S1G337200
Ledus.S1	AUGUSTUS	transcript	28023968	28026342	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	start_codon	28023968	28023970	.	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	CDS	28023968	28024201	0.62	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	exon	28023968	28024201	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	intron	28024202	28024399	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	CDS	28024400	28024492	1	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	exon	28024400	28024492	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	intron	28024493	28024651	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	CDS	28024652	28024714	1	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	exon	28024652	28024714	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	intron	28024715	28024800	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	CDS	28024801	28024902	1	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	exon	28024801	28024902	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	intron	28024903	28025099	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	CDS	28025100	28025186	1	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	exon	28025100	28025186	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	intron	28025187	28025287	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	CDS	28025288	28025345	1	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	exon	28025288	28025345	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	intron	28025346	28025436	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	CDS	28025437	28025495	1	+	2	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	exon	28025437	28025495	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	intron	28025496	28025587	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	CDS	28025588	28025653	1	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	exon	28025588	28025653	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	intron	28025654	28025773	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	CDS	28025774	28025842	1	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	exon	28025774	28025842	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	intron	28025843	28025927	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	CDS	28025928	28026023	1	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	exon	28025928	28026023	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	intron	28026024	28026119	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	CDS	28026120	28026194	0.95	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	exon	28026120	28026194	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	intron	28026195	28026303	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	CDS	28026304	28026342	0.99	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	exon	28026304	28026342	.	+	.	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
Ledus.S1	AUGUSTUS	stop_codon	28026343	28026345	.	+	0	transcript_id "Ledus.S1G337200.t1"; gene_id "Ledus.S1G337200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6699.t1 is derived from g4142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33354809	33355987	.	-	.	Ledus.S1G412000
Ledus.S1	AUGUSTUS	transcript	33354809	33355987	.	-	.	transcript_id "Ledus.S1G412000.t1"; gene_id "Ledus.S1G412000"
Ledus.S1	AUGUSTUS	stop_codon	33354806	33354808	.	-	0	transcript_id "Ledus.S1G412000.t1"; gene_id "Ledus.S1G412000"
Ledus.S1	AUGUSTUS	CDS	33354809	33355087	0.88	-	0	transcript_id "Ledus.S1G412000.t1"; gene_id "Ledus.S1G412000"
Ledus.S1	AUGUSTUS	exon	33354809	33355087	.	-	.	transcript_id "Ledus.S1G412000.t1"; gene_id "Ledus.S1G412000"
Ledus.S1	AUGUSTUS	intron	33355088	33355274	.	-	.	transcript_id "Ledus.S1G412000.t1"; gene_id "Ledus.S1G412000"
Ledus.S1	AUGUSTUS	CDS	33355275	33355532	0.89	-	0	transcript_id "Ledus.S1G412000.t1"; gene_id "Ledus.S1G412000"
Ledus.S1	AUGUSTUS	exon	33355275	33355532	.	-	.	transcript_id "Ledus.S1G412000.t1"; gene_id "Ledus.S1G412000"
Ledus.S1	AUGUSTUS	intron	33355533	33355630	.	-	.	transcript_id "Ledus.S1G412000.t1"; gene_id "Ledus.S1G412000"
Ledus.S1	AUGUSTUS	CDS	33355631	33355987	0.8	-	0	transcript_id "Ledus.S1G412000.t1"; gene_id "Ledus.S1G412000"
Ledus.S1	AUGUSTUS	exon	33355631	33355987	.	-	.	transcript_id "Ledus.S1G412000.t1"; gene_id "Ledus.S1G412000"
Ledus.S1	AUGUSTUS	start_codon	33355985	33355987	.	-	0	transcript_id "Ledus.S1G412000.t1"; gene_id "Ledus.S1G412000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg111.t1 is derived from g9524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	488753	488989	.	-	.	Ledus.C8G007100
Ledus.C8	AUGUSTUS	transcript	488753	488989	.	-	.	transcript_id "Ledus.C8G007100.t1"; gene_id "Ledus.C8G007100"
Ledus.C8	AUGUSTUS	stop_codon	488750	488752	.	-	0	transcript_id "Ledus.C8G007100.t1"; gene_id "Ledus.C8G007100"
Ledus.C8	AUGUSTUS	CDS	488753	488989	0.78	-	0	transcript_id "Ledus.C8G007100.t1"; gene_id "Ledus.C8G007100"
Ledus.C8	AUGUSTUS	exon	488753	488989	.	-	.	transcript_id "Ledus.C8G007100.t1"; gene_id "Ledus.C8G007100"
Ledus.C8	AUGUSTUS	start_codon	488987	488989	.	-	0	transcript_id "Ledus.C8G007100.t1"; gene_id "Ledus.C8G007100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12757.t1 is derived from g6379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14332262	14333606	.	+	.	Ledus.S4G191300
Ledus.S4	AUGUSTUS	transcript	14332262	14333606	.	+	.	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	start_codon	14332262	14332264	.	+	0	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	CDS	14332262	14332839	0.96	+	0	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	exon	14332262	14332839	.	+	.	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	intron	14332840	14332975	.	+	.	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	CDS	14332976	14333216	1	+	1	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	exon	14332976	14333216	.	+	.	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	intron	14333217	14333300	.	+	.	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	CDS	14333301	14333424	1	+	0	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	exon	14333301	14333424	.	+	.	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	intron	14333425	14333523	.	+	.	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	CDS	14333524	14333606	1	+	2	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	exon	14333524	14333606	.	+	.	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
Ledus.S4	AUGUSTUS	stop_codon	14333607	14333609	.	+	0	transcript_id "Ledus.S4G191300.t1"; gene_id "Ledus.S4G191300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3445.t1 is derived from g880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8409753	8411257	.	+	.	Ledus.S1G086600
Ledus.S1	AUGUSTUS	transcript	8409753	8411257	.	+	.	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	start_codon	8409753	8409755	.	+	0	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	CDS	8409753	8409847	0.77	+	0	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	exon	8409753	8409847	.	+	.	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	intron	8409848	8409931	.	+	.	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	CDS	8409932	8410072	1	+	1	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	exon	8409932	8410072	.	+	.	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	intron	8410073	8410156	.	+	.	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	CDS	8410157	8410287	1	+	1	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	exon	8410157	8410287	.	+	.	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	intron	8410288	8410383	.	+	.	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	CDS	8410384	8410563	1	+	2	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	exon	8410384	8410563	.	+	.	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	intron	8410564	8410652	.	+	.	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	CDS	8410653	8411257	1	+	2	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	exon	8410653	8411257	.	+	.	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
Ledus.S1	AUGUSTUS	stop_codon	8411258	8411260	.	+	0	transcript_id "Ledus.S1G086600.t1"; gene_id "Ledus.S1G086600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg821.t1 is derived from g7682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5321239	5321580	.	-	.	Ledus.S2G070300
Ledus.S2	AUGUSTUS	transcript	5321239	5321580	.	-	.	transcript_id "Ledus.S2G070300.t1"; gene_id "Ledus.S2G070300"
Ledus.S2	AUGUSTUS	stop_codon	5321236	5321238	.	-	0	transcript_id "Ledus.S2G070300.t1"; gene_id "Ledus.S2G070300"
Ledus.S2	AUGUSTUS	CDS	5321239	5321580	0.49	-	0	transcript_id "Ledus.S2G070300.t1"; gene_id "Ledus.S2G070300"
Ledus.S2	AUGUSTUS	exon	5321239	5321580	.	-	.	transcript_id "Ledus.S2G070300.t1"; gene_id "Ledus.S2G070300"
Ledus.S2	AUGUSTUS	start_codon	5321578	5321580	.	-	0	transcript_id "Ledus.S2G070300.t1"; gene_id "Ledus.S2G070300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8776.t1 is derived from g9806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1916291	1917419	.	-	.	Ledus.S3G025300
Ledus.S3	AUGUSTUS	transcript	1916291	1917419	.	-	.	transcript_id "Ledus.S3G025300.t1"; gene_id "Ledus.S3G025300"
Ledus.S3	AUGUSTUS	stop_codon	1916288	1916290	.	-	0	transcript_id "Ledus.S3G025300.t1"; gene_id "Ledus.S3G025300"
Ledus.S3	AUGUSTUS	CDS	1916291	1916564	1	-	1	transcript_id "Ledus.S3G025300.t1"; gene_id "Ledus.S3G025300"
Ledus.S3	AUGUSTUS	exon	1916291	1916564	.	-	.	transcript_id "Ledus.S3G025300.t1"; gene_id "Ledus.S3G025300"
Ledus.S3	AUGUSTUS	intron	1916565	1916677	.	-	.	transcript_id "Ledus.S3G025300.t1"; gene_id "Ledus.S3G025300"
Ledus.S3	AUGUSTUS	CDS	1916678	1916877	0.99	-	0	transcript_id "Ledus.S3G025300.t1"; gene_id "Ledus.S3G025300"
Ledus.S3	AUGUSTUS	exon	1916678	1916877	.	-	.	transcript_id "Ledus.S3G025300.t1"; gene_id "Ledus.S3G025300"
Ledus.S3	AUGUSTUS	intron	1916878	1917104	.	-	.	transcript_id "Ledus.S3G025300.t1"; gene_id "Ledus.S3G025300"
Ledus.S3	AUGUSTUS	CDS	1917105	1917419	0.25	-	0	transcript_id "Ledus.S3G025300.t1"; gene_id "Ledus.S3G025300"
Ledus.S3	AUGUSTUS	exon	1917105	1917419	.	-	.	transcript_id "Ledus.S3G025300.t1"; gene_id "Ledus.S3G025300"
Ledus.S3	AUGUSTUS	start_codon	1917417	1917419	.	-	0	transcript_id "Ledus.S3G025300.t1"; gene_id "Ledus.S3G025300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg168.t1 is derived from g7029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	521727	523316	.	-	.	Ledus.S2G005000
Ledus.S2	AUGUSTUS	transcript	521727	523316	.	-	.	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	stop_codon	521724	521726	.	-	0	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	CDS	521727	522008	1	-	0	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	exon	521727	522008	.	-	.	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	intron	522009	522102	.	-	.	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	CDS	522103	522363	1	-	0	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	exon	522103	522363	.	-	.	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	intron	522364	522435	.	-	.	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	CDS	522436	522845	0.62	-	2	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	exon	522436	522845	.	-	.	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	intron	522846	523132	.	-	.	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	CDS	523133	523316	0.71	-	0	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	exon	523133	523316	.	-	.	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
Ledus.S2	AUGUSTUS	start_codon	523314	523316	.	-	0	transcript_id "Ledus.S2G005000.t1"; gene_id "Ledus.S2G005000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11119.t1 is derived from g4737.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1950257	1955027	.	-	.	Ledus.S4G027500
Ledus.S4	AUGUSTUS	transcript	1950257	1955027	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	stop_codon	1950254	1950256	.	-	0	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	CDS	1950257	1950339	1	-	2	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	exon	1950257	1950339	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	intron	1950340	1950435	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	CDS	1950436	1950505	1	-	0	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	exon	1950436	1950505	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	intron	1950506	1950632	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	CDS	1950633	1951268	0.62	-	0	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	exon	1950633	1951268	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	intron	1951269	1951428	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	CDS	1951429	1952491	1	-	1	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	exon	1951429	1952491	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	intron	1952492	1952644	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	CDS	1952645	1952908	1	-	1	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	exon	1952645	1952908	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	intron	1952909	1953007	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	CDS	1953008	1953192	1	-	0	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	exon	1953008	1953192	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	intron	1953193	1953297	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	CDS	1953298	1953414	0.94	-	0	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	exon	1953298	1953414	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	intron	1953415	1953537	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	CDS	1953538	1953690	1	-	0	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	exon	1953538	1953690	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	intron	1953691	1953854	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	CDS	1953855	1953983	1	-	0	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	exon	1953855	1953983	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	intron	1953984	1954205	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	CDS	1954206	1955027	0.82	-	0	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	exon	1954206	1955027	.	-	.	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
Ledus.S4	AUGUSTUS	start_codon	1955025	1955027	.	-	0	transcript_id "Ledus.S4G027500.t1"; gene_id "Ledus.S4G027500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9934.t1 is derived from g10964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11301344	11302033	.	+	.	Ledus.S3G141100
Ledus.S3	AUGUSTUS	transcript	11301344	11302033	.	+	.	transcript_id "Ledus.S3G141100.t1"; gene_id "Ledus.S3G141100"
Ledus.S3	AUGUSTUS	start_codon	11301344	11301346	.	+	0	transcript_id "Ledus.S3G141100.t1"; gene_id "Ledus.S3G141100"
Ledus.S3	AUGUSTUS	CDS	11301344	11302033	0.52	+	0	transcript_id "Ledus.S3G141100.t1"; gene_id "Ledus.S3G141100"
Ledus.S3	AUGUSTUS	exon	11301344	11302033	.	+	.	transcript_id "Ledus.S3G141100.t1"; gene_id "Ledus.S3G141100"
Ledus.S3	AUGUSTUS	stop_codon	11302034	11302036	.	+	0	transcript_id "Ledus.S3G141100.t1"; gene_id "Ledus.S3G141100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg134.t1 is derived from g6995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	184284	190615	.	+	.	Ledus.S2G001600
Ledus.S2	AUGUSTUS	transcript	184284	190615	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	start_codon	184284	184286	.	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	184284	184466	0.98	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	184284	184466	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	184467	184621	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	184622	184696	1	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	184622	184696	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	184697	184884	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	184885	185383	0.66	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	184885	185383	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	185384	185497	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	185498	185913	0.97	+	2	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	185498	185913	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	185914	185999	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	186000	186028	1	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	186000	186028	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	186029	186110	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	186111	186316	0.5	+	1	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	186111	186316	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	186317	186575	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	186576	186751	1	+	2	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	186576	186751	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	186752	187027	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	187028	187196	0.98	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	187028	187196	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	187197	187298	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	187299	187351	0.98	+	2	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	187299	187351	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	187352	187443	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	187444	187527	0.83	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	187444	187527	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	187528	187699	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	187700	187804	1	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	187700	187804	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	187805	187884	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	187885	188010	1	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	187885	188010	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	188011	188111	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	188112	188297	1	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	188112	188297	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	188298	188420	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	188421	188527	1	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	188421	188527	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	188528	188673	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	188674	188836	1	+	1	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	188674	188836	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	188837	188949	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	188950	189024	1	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	188950	189024	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	189025	189118	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	189119	189212	1	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	189119	189212	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	189213	189330	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	189331	189443	1	+	2	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	189331	189443	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	189444	189690	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	189691	189767	1	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	189691	189767	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	189768	189892	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	189893	190043	1	+	1	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	189893	190043	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	intron	190044	190141	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	CDS	190142	190615	1	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	exon	190142	190615	.	+	.	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
Ledus.S2	AUGUSTUS	stop_codon	190616	190618	.	+	0	transcript_id "Ledus.S2G001600.t1"; gene_id "Ledus.S2G001600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6896.t1 is derived from g4340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35054533	35055963	.	+	.	Ledus.S1G431700
Ledus.S1	AUGUSTUS	transcript	35054533	35055963	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	start_codon	35054533	35054535	.	+	0	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	CDS	35054533	35054637	0.62	+	0	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	exon	35054533	35054637	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	intron	35054638	35054740	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	CDS	35054741	35054886	0.98	+	0	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	exon	35054741	35054886	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	intron	35054887	35054971	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	CDS	35054972	35055071	1	+	1	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	exon	35054972	35055071	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	intron	35055072	35055162	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	CDS	35055163	35055239	1	+	0	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	exon	35055163	35055239	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	intron	35055240	35055335	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	CDS	35055336	35055511	1	+	1	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	exon	35055336	35055511	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	intron	35055512	35055593	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	CDS	35055594	35055664	1	+	2	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	exon	35055594	35055664	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	intron	35055665	35055739	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	CDS	35055740	35055820	1	+	0	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	exon	35055740	35055820	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	intron	35055821	35055906	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	CDS	35055907	35055963	1	+	0	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	exon	35055907	35055963	.	+	.	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
Ledus.S1	AUGUSTUS	stop_codon	35055964	35055966	.	+	0	transcript_id "Ledus.S1G431700.t1"; gene_id "Ledus.S1G431700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5473.t1 is derived from g2912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24470720	24471842	.	-	.	Ledus.S1G289400
Ledus.S1	AUGUSTUS	transcript	24470720	24471842	.	-	.	transcript_id "Ledus.S1G289400.t1"; gene_id "Ledus.S1G289400"
Ledus.S1	AUGUSTUS	stop_codon	24470717	24470719	.	-	0	transcript_id "Ledus.S1G289400.t1"; gene_id "Ledus.S1G289400"
Ledus.S1	AUGUSTUS	CDS	24470720	24471092	1	-	1	transcript_id "Ledus.S1G289400.t1"; gene_id "Ledus.S1G289400"
Ledus.S1	AUGUSTUS	exon	24470720	24471092	.	-	.	transcript_id "Ledus.S1G289400.t1"; gene_id "Ledus.S1G289400"
Ledus.S1	AUGUSTUS	intron	24471093	24471196	.	-	.	transcript_id "Ledus.S1G289400.t1"; gene_id "Ledus.S1G289400"
Ledus.S1	AUGUSTUS	CDS	24471197	24471314	0.96	-	2	transcript_id "Ledus.S1G289400.t1"; gene_id "Ledus.S1G289400"
Ledus.S1	AUGUSTUS	exon	24471197	24471314	.	-	.	transcript_id "Ledus.S1G289400.t1"; gene_id "Ledus.S1G289400"
Ledus.S1	AUGUSTUS	intron	24471315	24471409	.	-	.	transcript_id "Ledus.S1G289400.t1"; gene_id "Ledus.S1G289400"
Ledus.S1	AUGUSTUS	CDS	24471410	24471842	0.79	-	0	transcript_id "Ledus.S1G289400.t1"; gene_id "Ledus.S1G289400"
Ledus.S1	AUGUSTUS	exon	24471410	24471842	.	-	.	transcript_id "Ledus.S1G289400.t1"; gene_id "Ledus.S1G289400"
Ledus.S1	AUGUSTUS	start_codon	24471840	24471842	.	-	0	transcript_id "Ledus.S1G289400.t1"; gene_id "Ledus.S1G289400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8357.t1 is derived from g13029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11030188	11030493	.	-	.	Ledus.S5G113500
Ledus.S5	AUGUSTUS	transcript	11030188	11030493	.	-	.	transcript_id "Ledus.S5G113500.t1"; gene_id "Ledus.S5G113500"
Ledus.S5	AUGUSTUS	stop_codon	11030185	11030187	.	-	0	transcript_id "Ledus.S5G113500.t1"; gene_id "Ledus.S5G113500"
Ledus.S5	AUGUSTUS	CDS	11030188	11030493	0.89	-	0	transcript_id "Ledus.S5G113500.t1"; gene_id "Ledus.S5G113500"
Ledus.S5	AUGUSTUS	exon	11030188	11030493	.	-	.	transcript_id "Ledus.S5G113500.t1"; gene_id "Ledus.S5G113500"
Ledus.S5	AUGUSTUS	start_codon	11030491	11030493	.	-	0	transcript_id "Ledus.S5G113500.t1"; gene_id "Ledus.S5G113500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11786.t1 is derived from g5405.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6764029	6764694	.	-	.	Ledus.S4G094200
Ledus.S4	AUGUSTUS	transcript	6764061	6764694	.	-	.	transcript_id "Ledus.S4G094200.t1"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	stop_codon	6764058	6764060	.	-	0	transcript_id "Ledus.S4G094200.t1"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	CDS	6764061	6764128	0.89	-	2	transcript_id "Ledus.S4G094200.t1"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	exon	6764061	6764128	.	-	.	transcript_id "Ledus.S4G094200.t1"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	intron	6764129	6764221	.	-	.	transcript_id "Ledus.S4G094200.t1"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	CDS	6764222	6764351	0.85	-	0	transcript_id "Ledus.S4G094200.t1"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	exon	6764222	6764351	.	-	.	transcript_id "Ledus.S4G094200.t1"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	intron	6764352	6764664	.	-	.	transcript_id "Ledus.S4G094200.t1"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	CDS	6764665	6764694	0.78	-	0	transcript_id "Ledus.S4G094200.t1"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	exon	6764665	6764694	.	-	.	transcript_id "Ledus.S4G094200.t1"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	start_codon	6764692	6764694	.	-	0	transcript_id "Ledus.S4G094200.t1"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	transcript	6764029	6764694	.	-	.	transcript_id "Ledus.S4G094200.t2"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	stop_codon	6764026	6764028	.	-	0	transcript_id "Ledus.S4G094200.t2"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	CDS	6764029	6764132	0.59	-	2	transcript_id "Ledus.S4G094200.t2"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	exon	6764029	6764132	.	-	.	transcript_id "Ledus.S4G094200.t2"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	intron	6764133	6764221	.	-	.	transcript_id "Ledus.S4G094200.t2"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	CDS	6764222	6764351	0.86	-	0	transcript_id "Ledus.S4G094200.t2"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	exon	6764222	6764351	.	-	.	transcript_id "Ledus.S4G094200.t2"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	intron	6764352	6764664	.	-	.	transcript_id "Ledus.S4G094200.t2"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	CDS	6764665	6764694	0.8	-	0	transcript_id "Ledus.S4G094200.t2"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	exon	6764665	6764694	.	-	.	transcript_id "Ledus.S4G094200.t2"; gene_id "Ledus.S4G094200"
Ledus.S4	AUGUSTUS	start_codon	6764692	6764694	.	-	0	transcript_id "Ledus.S4G094200.t2"; gene_id "Ledus.S4G094200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6761.t1 is derived from g4204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33898584	33899015	.	-	.	Ledus.S1G418200
Ledus.S1	AUGUSTUS	transcript	33898584	33899015	.	-	.	transcript_id "Ledus.S1G418200.t1"; gene_id "Ledus.S1G418200"
Ledus.S1	AUGUSTUS	stop_codon	33898581	33898583	.	-	0	transcript_id "Ledus.S1G418200.t1"; gene_id "Ledus.S1G418200"
Ledus.S1	AUGUSTUS	CDS	33898584	33899015	0.89	-	0	transcript_id "Ledus.S1G418200.t1"; gene_id "Ledus.S1G418200"
Ledus.S1	AUGUSTUS	exon	33898584	33899015	.	-	.	transcript_id "Ledus.S1G418200.t1"; gene_id "Ledus.S1G418200"
Ledus.S1	AUGUSTUS	start_codon	33899013	33899015	.	-	0	transcript_id "Ledus.S1G418200.t1"; gene_id "Ledus.S1G418200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4234.t1 is derived from g1670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15682681	15684501	.	+	.	Ledus.S1G165500
Ledus.S1	AUGUSTUS	transcript	15682681	15684501	.	+	.	transcript_id "Ledus.S1G165500.t1"; gene_id "Ledus.S1G165500"
Ledus.S1	AUGUSTUS	start_codon	15682681	15682683	.	+	0	transcript_id "Ledus.S1G165500.t1"; gene_id "Ledus.S1G165500"
Ledus.S1	AUGUSTUS	CDS	15682681	15684501	0.68	+	0	transcript_id "Ledus.S1G165500.t1"; gene_id "Ledus.S1G165500"
Ledus.S1	AUGUSTUS	exon	15682681	15684501	.	+	.	transcript_id "Ledus.S1G165500.t1"; gene_id "Ledus.S1G165500"
Ledus.S1	AUGUSTUS	stop_codon	15684502	15684504	.	+	0	transcript_id "Ledus.S1G165500.t1"; gene_id "Ledus.S1G165500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12977.t1 is derived from g6787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1511503	1511835	.	+	.	Ledus.S6G003900
Ledus.S6	AUGUSTUS	transcript	1511503	1511835	.	+	.	transcript_id "Ledus.S6G003900.t1"; gene_id "Ledus.S6G003900"
Ledus.S6	AUGUSTUS	start_codon	1511503	1511505	.	+	0	transcript_id "Ledus.S6G003900.t1"; gene_id "Ledus.S6G003900"
Ledus.S6	AUGUSTUS	CDS	1511503	1511835	0.97	+	0	transcript_id "Ledus.S6G003900.t1"; gene_id "Ledus.S6G003900"
Ledus.S6	AUGUSTUS	exon	1511503	1511835	.	+	.	transcript_id "Ledus.S6G003900.t1"; gene_id "Ledus.S6G003900"
Ledus.S6	AUGUSTUS	stop_codon	1511836	1511838	.	+	0	transcript_id "Ledus.S6G003900.t1"; gene_id "Ledus.S6G003900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg341.t1 is derived from g7202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1828092	1829360	.	-	.	Ledus.S2G022300
Ledus.S2	AUGUSTUS	transcript	1828092	1829360	.	-	.	transcript_id "Ledus.S2G022300.t1"; gene_id "Ledus.S2G022300"
Ledus.S2	AUGUSTUS	stop_codon	1828089	1828091	.	-	0	transcript_id "Ledus.S2G022300.t1"; gene_id "Ledus.S2G022300"
Ledus.S2	AUGUSTUS	CDS	1828092	1829360	0.99	-	0	transcript_id "Ledus.S2G022300.t1"; gene_id "Ledus.S2G022300"
Ledus.S2	AUGUSTUS	exon	1828092	1829360	.	-	.	transcript_id "Ledus.S2G022300.t1"; gene_id "Ledus.S2G022300"
Ledus.S2	AUGUSTUS	start_codon	1829358	1829360	.	-	0	transcript_id "Ledus.S2G022300.t1"; gene_id "Ledus.S2G022300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6045.t1 is derived from g3488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28662790	28664047	.	-	.	Ledus.S1G346600
Ledus.S1	AUGUSTUS	transcript	28662790	28664047	.	-	.	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	stop_codon	28662787	28662789	.	-	0	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	CDS	28662790	28663196	1	-	2	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	exon	28662790	28663196	.	-	.	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	intron	28663197	28663288	.	-	.	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	CDS	28663289	28663454	1	-	0	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	exon	28663289	28663454	.	-	.	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	intron	28663455	28663567	.	-	.	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	CDS	28663568	28663747	1	-	0	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	exon	28663568	28663747	.	-	.	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	intron	28663748	28663825	.	-	.	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	CDS	28663826	28664047	0.62	-	0	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	exon	28663826	28664047	.	-	.	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
Ledus.S1	AUGUSTUS	start_codon	28664045	28664047	.	-	0	transcript_id "Ledus.S1G346600.t1"; gene_id "Ledus.S1G346600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11815.t1 is derived from g5434.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6960655	6961352	.	-	.	Ledus.S4G097100
Ledus.S4	AUGUSTUS	transcript	6960655	6961352	.	-	.	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	stop_codon	6960652	6960654	.	-	0	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	CDS	6960655	6960728	1	-	2	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	exon	6960655	6960728	.	-	.	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	intron	6960729	6960812	.	-	.	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	CDS	6960813	6961025	1	-	2	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	exon	6960813	6961025	.	-	.	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	intron	6961026	6961112	.	-	.	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	CDS	6961113	6961184	1	-	2	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	exon	6961113	6961184	.	-	.	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	intron	6961185	6961273	.	-	.	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	CDS	6961274	6961352	0.85	-	0	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	exon	6961274	6961352	.	-	.	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
Ledus.S4	AUGUSTUS	start_codon	6961350	6961352	.	-	0	transcript_id "Ledus.S4G097100.t1"; gene_id "Ledus.S4G097100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5463.t1 is derived from g2902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24409506	24412207	.	-	.	Ledus.S1G288400
Ledus.S1	AUGUSTUS	transcript	24409506	24412207	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	stop_codon	24409503	24409505	.	-	0	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	CDS	24409506	24409869	1	-	1	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	exon	24409506	24409869	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	intron	24409870	24409952	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	CDS	24409953	24410103	0.99	-	2	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	exon	24409953	24410103	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	intron	24410104	24410440	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	CDS	24410441	24410622	0.52	-	1	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	exon	24410441	24410622	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	intron	24410623	24410830	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	CDS	24410831	24410864	0.74	-	2	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	exon	24410831	24410864	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	intron	24410865	24411002	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	CDS	24411003	24411134	0.84	-	2	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	exon	24411003	24411134	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	intron	24411135	24411236	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	CDS	24411237	24411328	1	-	1	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	exon	24411237	24411328	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	intron	24411329	24411412	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	CDS	24411413	24411452	1	-	2	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	exon	24411413	24411452	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	intron	24411453	24411537	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	CDS	24411538	24411767	1	-	1	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	exon	24411538	24411767	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	intron	24411768	24411850	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	CDS	24411851	24411975	1	-	0	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	exon	24411851	24411975	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	intron	24411976	24412057	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	CDS	24412058	24412207	0.83	-	0	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	exon	24412058	24412207	.	-	.	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
Ledus.S1	AUGUSTUS	start_codon	24412205	24412207	.	-	0	transcript_id "Ledus.S1G288400.t1"; gene_id "Ledus.S1G288400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7886.t1 is derived from g12557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7642192	7642494	.	-	.	Ledus.S5G066400
Ledus.S5	AUGUSTUS	transcript	7642192	7642494	.	-	.	transcript_id "Ledus.S5G066400.t1"; gene_id "Ledus.S5G066400"
Ledus.S5	AUGUSTUS	stop_codon	7642189	7642191	.	-	0	transcript_id "Ledus.S5G066400.t1"; gene_id "Ledus.S5G066400"
Ledus.S5	AUGUSTUS	CDS	7642192	7642494	0.79	-	0	transcript_id "Ledus.S5G066400.t1"; gene_id "Ledus.S5G066400"
Ledus.S5	AUGUSTUS	exon	7642192	7642494	.	-	.	transcript_id "Ledus.S5G066400.t1"; gene_id "Ledus.S5G066400"
Ledus.S5	AUGUSTUS	start_codon	7642492	7642494	.	-	0	transcript_id "Ledus.S5G066400.t1"; gene_id "Ledus.S5G066400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5084.t1 is derived from g2523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21487885	21489299	.	+	.	Ledus.S1G250500
Ledus.S1	AUGUSTUS	transcript	21487885	21489299	.	+	.	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	start_codon	21487885	21487887	.	+	0	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	CDS	21487885	21488095	0.58	+	0	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	exon	21487885	21488095	.	+	.	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	intron	21488096	21488256	.	+	.	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	CDS	21488257	21488300	0.81	+	2	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	exon	21488257	21488300	.	+	.	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	intron	21488301	21488517	.	+	.	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	CDS	21488518	21488587	0.78	+	0	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	exon	21488518	21488587	.	+	.	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	intron	21488588	21488801	.	+	.	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	CDS	21488802	21489042	1	+	2	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	exon	21488802	21489042	.	+	.	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	intron	21489043	21489250	.	+	.	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	CDS	21489251	21489299	0.49	+	1	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	exon	21489251	21489299	.	+	.	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
Ledus.S1	AUGUSTUS	stop_codon	21489300	21489302	.	+	0	transcript_id "Ledus.S1G250500.t1"; gene_id "Ledus.S1G250500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1527.t1 is derived from g8388.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10806483	10807553	.	+	.	Ledus.S2G140900
Ledus.S2	AUGUSTUS	transcript	10806483	10807553	.	+	.	transcript_id "Ledus.S2G140900.t1"; gene_id "Ledus.S2G140900"
Ledus.S2	AUGUSTUS	start_codon	10806483	10806485	.	+	0	transcript_id "Ledus.S2G140900.t1"; gene_id "Ledus.S2G140900"
Ledus.S2	AUGUSTUS	CDS	10806483	10807553	0.96	+	0	transcript_id "Ledus.S2G140900.t1"; gene_id "Ledus.S2G140900"
Ledus.S2	AUGUSTUS	exon	10806483	10807553	.	+	.	transcript_id "Ledus.S2G140900.t1"; gene_id "Ledus.S2G140900"
Ledus.S2	AUGUSTUS	stop_codon	10807554	10807556	.	+	0	transcript_id "Ledus.S2G140900.t1"; gene_id "Ledus.S2G140900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11544.t1 is derived from g5162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5210354	5211475	.	-	.	Ledus.S4G070000
Ledus.S4	AUGUSTUS	transcript	5210354	5211475	.	-	.	transcript_id "Ledus.S4G070000.t1"; gene_id "Ledus.S4G070000"
Ledus.S4	AUGUSTUS	stop_codon	5210351	5210353	.	-	0	transcript_id "Ledus.S4G070000.t1"; gene_id "Ledus.S4G070000"
Ledus.S4	AUGUSTUS	CDS	5210354	5211475	0.99	-	0	transcript_id "Ledus.S4G070000.t1"; gene_id "Ledus.S4G070000"
Ledus.S4	AUGUSTUS	exon	5210354	5211475	.	-	.	transcript_id "Ledus.S4G070000.t1"; gene_id "Ledus.S4G070000"
Ledus.S4	AUGUSTUS	start_codon	5211473	5211475	.	-	0	transcript_id "Ledus.S4G070000.t1"; gene_id "Ledus.S4G070000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13052.t1 is derived from g6862.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4186031	4186240	.	+	.	Ledus.S6G011400
Ledus.S6	AUGUSTUS	transcript	4186031	4186240	.	+	.	transcript_id "Ledus.S6G011400.t1"; gene_id "Ledus.S6G011400"
Ledus.S6	AUGUSTUS	start_codon	4186031	4186033	.	+	0	transcript_id "Ledus.S6G011400.t1"; gene_id "Ledus.S6G011400"
Ledus.S6	AUGUSTUS	CDS	4186031	4186240	0.78	+	0	transcript_id "Ledus.S6G011400.t1"; gene_id "Ledus.S6G011400"
Ledus.S6	AUGUSTUS	exon	4186031	4186240	.	+	.	transcript_id "Ledus.S6G011400.t1"; gene_id "Ledus.S6G011400"
Ledus.S6	AUGUSTUS	stop_codon	4186241	4186243	.	+	0	transcript_id "Ledus.S6G011400.t1"; gene_id "Ledus.S6G011400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1106.t1 is derived from g7967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7549967	7550326	.	-	.	Ledus.S2G098800
Ledus.S2	AUGUSTUS	transcript	7549967	7550326	.	-	.	transcript_id "Ledus.S2G098800.t1"; gene_id "Ledus.S2G098800"
Ledus.S2	AUGUSTUS	stop_codon	7549964	7549966	.	-	0	transcript_id "Ledus.S2G098800.t1"; gene_id "Ledus.S2G098800"
Ledus.S2	AUGUSTUS	CDS	7549967	7550326	0.62	-	0	transcript_id "Ledus.S2G098800.t1"; gene_id "Ledus.S2G098800"
Ledus.S2	AUGUSTUS	exon	7549967	7550326	.	-	.	transcript_id "Ledus.S2G098800.t1"; gene_id "Ledus.S2G098800"
Ledus.S2	AUGUSTUS	start_codon	7550324	7550326	.	-	0	transcript_id "Ledus.S2G098800.t1"; gene_id "Ledus.S2G098800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2895.t1 is derived from g330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4439774	4441684	.	+	.	Ledus.S1G031600
Ledus.S1	AUGUSTUS	transcript	4439774	4441684	.	+	.	transcript_id "Ledus.S1G031600.t1"; gene_id "Ledus.S1G031600"
Ledus.S1	AUGUSTUS	start_codon	4439774	4439776	.	+	0	transcript_id "Ledus.S1G031600.t1"; gene_id "Ledus.S1G031600"
Ledus.S1	AUGUSTUS	CDS	4439774	4441684	1	+	0	transcript_id "Ledus.S1G031600.t1"; gene_id "Ledus.S1G031600"
Ledus.S1	AUGUSTUS	exon	4439774	4441684	.	+	.	transcript_id "Ledus.S1G031600.t1"; gene_id "Ledus.S1G031600"
Ledus.S1	AUGUSTUS	stop_codon	4441685	4441687	.	+	0	transcript_id "Ledus.S1G031600.t1"; gene_id "Ledus.S1G031600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7382.t1 is derived from g12053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1951486	1951980	.	-	.	Ledus.S5G016000
Ledus.S5	AUGUSTUS	transcript	1951486	1951980	.	-	.	transcript_id "Ledus.S5G016000.t1"; gene_id "Ledus.S5G016000"
Ledus.S5	AUGUSTUS	stop_codon	1951483	1951485	.	-	0	transcript_id "Ledus.S5G016000.t1"; gene_id "Ledus.S5G016000"
Ledus.S5	AUGUSTUS	CDS	1951486	1951980	0.69	-	0	transcript_id "Ledus.S5G016000.t1"; gene_id "Ledus.S5G016000"
Ledus.S5	AUGUSTUS	exon	1951486	1951980	.	-	.	transcript_id "Ledus.S5G016000.t1"; gene_id "Ledus.S5G016000"
Ledus.S5	AUGUSTUS	start_codon	1951978	1951980	.	-	0	transcript_id "Ledus.S5G016000.t1"; gene_id "Ledus.S5G016000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10493.t1 is derived from g11523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15604976	15605796	.	+	.	Ledus.S3G197000
Ledus.S3	AUGUSTUS	transcript	15604976	15605796	.	+	.	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	start_codon	15604976	15604978	.	+	0	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	CDS	15604976	15605221	0.54	+	0	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	exon	15604976	15605221	.	+	.	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	intron	15605222	15605550	.	+	.	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	CDS	15605551	15605571	1	+	0	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	exon	15605551	15605571	.	+	.	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	intron	15605572	15605630	.	+	.	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	CDS	15605631	15605683	1	+	0	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	exon	15605631	15605683	.	+	.	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	intron	15605684	15605756	.	+	.	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	CDS	15605757	15605796	1	+	1	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	exon	15605757	15605796	.	+	.	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
Ledus.S3	AUGUSTUS	stop_codon	15605797	15605799	.	+	0	transcript_id "Ledus.S3G197000.t1"; gene_id "Ledus.S3G197000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12145.t1 is derived from g5764.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9797484	9800284	.	-	.	Ledus.S4G130100
Ledus.S4	AUGUSTUS	transcript	9797484	9800284	.	-	.	transcript_id "Ledus.S4G130100.t1"; gene_id "Ledus.S4G130100"
Ledus.S4	AUGUSTUS	stop_codon	9797481	9797483	.	-	0	transcript_id "Ledus.S4G130100.t1"; gene_id "Ledus.S4G130100"
Ledus.S4	AUGUSTUS	CDS	9797484	9798815	0.98	-	0	transcript_id "Ledus.S4G130100.t1"; gene_id "Ledus.S4G130100"
Ledus.S4	AUGUSTUS	exon	9797484	9798815	.	-	.	transcript_id "Ledus.S4G130100.t1"; gene_id "Ledus.S4G130100"
Ledus.S4	AUGUSTUS	intron	9798816	9798963	.	-	.	transcript_id "Ledus.S4G130100.t1"; gene_id "Ledus.S4G130100"
Ledus.S4	AUGUSTUS	CDS	9798964	9799980	1	-	0	transcript_id "Ledus.S4G130100.t1"; gene_id "Ledus.S4G130100"
Ledus.S4	AUGUSTUS	exon	9798964	9799980	.	-	.	transcript_id "Ledus.S4G130100.t1"; gene_id "Ledus.S4G130100"
Ledus.S4	AUGUSTUS	intron	9799981	9800125	.	-	.	transcript_id "Ledus.S4G130100.t1"; gene_id "Ledus.S4G130100"
Ledus.S4	AUGUSTUS	CDS	9800126	9800284	0.35	-	0	transcript_id "Ledus.S4G130100.t1"; gene_id "Ledus.S4G130100"
Ledus.S4	AUGUSTUS	exon	9800126	9800284	.	-	.	transcript_id "Ledus.S4G130100.t1"; gene_id "Ledus.S4G130100"
Ledus.S4	AUGUSTUS	start_codon	9800282	9800284	.	-	0	transcript_id "Ledus.S4G130100.t1"; gene_id "Ledus.S4G130100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5697.t1 is derived from g3136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25960708	25961358	.	+	.	Ledus.S1G311800
Ledus.S1	AUGUSTUS	transcript	25960708	25961358	.	+	.	transcript_id "Ledus.S1G311800.t1"; gene_id "Ledus.S1G311800"
Ledus.S1	AUGUSTUS	start_codon	25960708	25960710	.	+	0	transcript_id "Ledus.S1G311800.t1"; gene_id "Ledus.S1G311800"
Ledus.S1	AUGUSTUS	CDS	25960708	25960933	0.66	+	0	transcript_id "Ledus.S1G311800.t1"; gene_id "Ledus.S1G311800"
Ledus.S1	AUGUSTUS	exon	25960708	25960933	.	+	.	transcript_id "Ledus.S1G311800.t1"; gene_id "Ledus.S1G311800"
Ledus.S1	AUGUSTUS	intron	25960934	25961063	.	+	.	transcript_id "Ledus.S1G311800.t1"; gene_id "Ledus.S1G311800"
Ledus.S1	AUGUSTUS	CDS	25961064	25961227	0.81	+	2	transcript_id "Ledus.S1G311800.t1"; gene_id "Ledus.S1G311800"
Ledus.S1	AUGUSTUS	exon	25961064	25961227	.	+	.	transcript_id "Ledus.S1G311800.t1"; gene_id "Ledus.S1G311800"
Ledus.S1	AUGUSTUS	intron	25961228	25961316	.	+	.	transcript_id "Ledus.S1G311800.t1"; gene_id "Ledus.S1G311800"
Ledus.S1	AUGUSTUS	CDS	25961317	25961358	0.5	+	0	transcript_id "Ledus.S1G311800.t1"; gene_id "Ledus.S1G311800"
Ledus.S1	AUGUSTUS	exon	25961317	25961358	.	+	.	transcript_id "Ledus.S1G311800.t1"; gene_id "Ledus.S1G311800"
Ledus.S1	AUGUSTUS	stop_codon	25961359	25961361	.	+	0	transcript_id "Ledus.S1G311800.t1"; gene_id "Ledus.S1G311800"
# This transcript jg5575.t2 is derived from g3014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5576.t1 is derived from g3015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25226344	25227420	.	+	.	Ledus.S1G299700
Ledus.S1	AUGUSTUS	transcript	25226344	25227420	.	+	.	transcript_id "Ledus.S1G299700.t1"; gene_id "Ledus.S1G299700"
Ledus.S1	AUGUSTUS	start_codon	25226344	25226346	.	+	0	transcript_id "Ledus.S1G299700.t1"; gene_id "Ledus.S1G299700"
Ledus.S1	AUGUSTUS	CDS	25226344	25227420	0.99	+	0	transcript_id "Ledus.S1G299700.t1"; gene_id "Ledus.S1G299700"
Ledus.S1	AUGUSTUS	exon	25226344	25227420	.	+	.	transcript_id "Ledus.S1G299700.t1"; gene_id "Ledus.S1G299700"
Ledus.S1	AUGUSTUS	stop_codon	25227421	25227423	.	+	0	transcript_id "Ledus.S1G299700.t1"; gene_id "Ledus.S1G299700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8541.t1 is derived from g9571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	97156	98745	.	-	.	Ledus.S3G001800
Ledus.S3	AUGUSTUS	transcript	97156	98745	.	-	.	transcript_id "Ledus.S3G001800.t1"; gene_id "Ledus.S3G001800"
Ledus.S3	AUGUSTUS	stop_codon	97153	97155	.	-	0	transcript_id "Ledus.S3G001800.t1"; gene_id "Ledus.S3G001800"
Ledus.S3	AUGUSTUS	CDS	97156	98745	0.67	-	0	transcript_id "Ledus.S3G001800.t1"; gene_id "Ledus.S3G001800"
Ledus.S3	AUGUSTUS	exon	97156	98745	.	-	.	transcript_id "Ledus.S3G001800.t1"; gene_id "Ledus.S3G001800"
Ledus.S3	AUGUSTUS	start_codon	98743	98745	.	-	0	transcript_id "Ledus.S3G001800.t1"; gene_id "Ledus.S3G001800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3700.t1 is derived from g1136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11001395	11002176	.	+	.	Ledus.S1G112100
Ledus.S1	AUGUSTUS	transcript	11001395	11002176	.	+	.	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	start_codon	11001395	11001397	.	+	0	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	CDS	11001395	11001424	0.98	+	0	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	exon	11001395	11001424	.	+	.	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	intron	11001425	11001573	.	+	.	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	CDS	11001574	11001582	0.98	+	0	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	exon	11001574	11001582	.	+	.	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	intron	11001583	11001659	.	+	.	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	CDS	11001660	11001701	0.9	+	0	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	exon	11001660	11001701	.	+	.	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	intron	11001702	11001775	.	+	.	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	CDS	11001776	11001829	1	+	0	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	exon	11001776	11001829	.	+	.	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	intron	11001830	11002068	.	+	.	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	CDS	11002069	11002176	0.97	+	0	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	exon	11002069	11002176	.	+	.	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
Ledus.S1	AUGUSTUS	stop_codon	11002177	11002179	.	+	0	transcript_id "Ledus.S1G112100.t1"; gene_id "Ledus.S1G112100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6709.t1 is derived from g4152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33441172	33447248	.	+	.	Ledus.S1G413000
Ledus.S1	AUGUSTUS	transcript	33441172	33447248	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	start_codon	33441172	33441174	.	+	0	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33441172	33441304	0.54	+	0	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33441172	33441304	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33441305	33441449	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33441450	33441834	1	+	2	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33441450	33441834	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33441835	33441927	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33441928	33442055	0.99	+	1	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33441928	33442055	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33442056	33442162	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33442163	33442290	0.97	+	2	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33442163	33442290	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33442291	33442409	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33442410	33443177	0.97	+	0	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33442410	33443177	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33443178	33443338	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33443339	33443551	1	+	0	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33443339	33443551	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33443552	33444331	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33444332	33444346	0.95	+	0	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33444332	33444346	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33444347	33444441	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33444442	33444520	0.96	+	0	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33444442	33444520	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33444521	33444619	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33444620	33444850	0.96	+	2	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33444620	33444850	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33444851	33445120	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33445121	33445152	1	+	2	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33445121	33445152	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33445153	33445276	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33445277	33445366	1	+	0	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33445277	33445366	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33445367	33445450	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33445451	33445545	1	+	0	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33445451	33445545	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33445546	33445663	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33445664	33445934	0.97	+	1	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33445664	33445934	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33445935	33446095	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33446096	33446165	1	+	0	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33446096	33446165	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33446166	33446255	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33446256	33446334	1	+	2	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33446256	33446334	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33446335	33446486	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33446487	33446620	1	+	1	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33446487	33446620	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33446621	33446715	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33446716	33446816	1	+	2	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33446716	33446816	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33446817	33446914	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33446915	33446994	1	+	0	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33446915	33446994	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	intron	33446995	33447148	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	CDS	33447149	33447248	0.85	+	1	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	exon	33447149	33447248	.	+	.	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
Ledus.S1	AUGUSTUS	stop_codon	33447249	33447251	.	+	0	transcript_id "Ledus.S1G413000.t1"; gene_id "Ledus.S1G413000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11879.t1 is derived from g5498.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7492904	7493873	.	+	.	Ledus.S4G103500
Ledus.S4	AUGUSTUS	transcript	7492904	7493873	.	+	.	transcript_id "Ledus.S4G103500.t1"; gene_id "Ledus.S4G103500"
Ledus.S4	AUGUSTUS	start_codon	7492904	7492906	.	+	0	transcript_id "Ledus.S4G103500.t1"; gene_id "Ledus.S4G103500"
Ledus.S4	AUGUSTUS	CDS	7492904	7492941	0.45	+	0	transcript_id "Ledus.S4G103500.t1"; gene_id "Ledus.S4G103500"
Ledus.S4	AUGUSTUS	exon	7492904	7492941	.	+	.	transcript_id "Ledus.S4G103500.t1"; gene_id "Ledus.S4G103500"
Ledus.S4	AUGUSTUS	intron	7492942	7493119	.	+	.	transcript_id "Ledus.S4G103500.t1"; gene_id "Ledus.S4G103500"
Ledus.S4	AUGUSTUS	CDS	7493120	7493873	0.57	+	1	transcript_id "Ledus.S4G103500.t1"; gene_id "Ledus.S4G103500"
Ledus.S4	AUGUSTUS	exon	7493120	7493873	.	+	.	transcript_id "Ledus.S4G103500.t1"; gene_id "Ledus.S4G103500"
Ledus.S4	AUGUSTUS	stop_codon	7493874	7493876	.	+	0	transcript_id "Ledus.S4G103500.t1"; gene_id "Ledus.S4G103500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9831.t1 is derived from g10861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10333803	10334486	.	-	.	Ledus.S3G130800
Ledus.S3	AUGUSTUS	transcript	10333803	10334486	.	-	.	transcript_id "Ledus.S3G130800.t1"; gene_id "Ledus.S3G130800"
Ledus.S3	AUGUSTUS	stop_codon	10333800	10333802	.	-	0	transcript_id "Ledus.S3G130800.t1"; gene_id "Ledus.S3G130800"
Ledus.S3	AUGUSTUS	CDS	10333803	10334486	0.98	-	0	transcript_id "Ledus.S3G130800.t1"; gene_id "Ledus.S3G130800"
Ledus.S3	AUGUSTUS	exon	10333803	10334486	.	-	.	transcript_id "Ledus.S3G130800.t1"; gene_id "Ledus.S3G130800"
Ledus.S3	AUGUSTUS	start_codon	10334484	10334486	.	-	0	transcript_id "Ledus.S3G130800.t1"; gene_id "Ledus.S3G130800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7082.t1 is derived from g6613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1366646	1368033	.	-	.	Ledus.C7G014300
Ledus.C7	AUGUSTUS	transcript	1366646	1368033	.	-	.	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	stop_codon	1366643	1366645	.	-	0	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	CDS	1366646	1366669	0.77	-	0	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	exon	1366646	1366669	.	-	.	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	intron	1366670	1366899	.	-	.	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	CDS	1366900	1366940	0.7	-	2	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	exon	1366900	1366940	.	-	.	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	intron	1366941	1367218	.	-	.	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	CDS	1367219	1367411	0.53	-	0	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	exon	1367219	1367411	.	-	.	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	intron	1367412	1367743	.	-	.	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	CDS	1367744	1367903	0.95	-	1	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	exon	1367744	1367903	.	-	.	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	intron	1367904	1368001	.	-	.	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	CDS	1368002	1368033	0.54	-	0	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	exon	1368002	1368033	.	-	.	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
Ledus.C7	AUGUSTUS	start_codon	1368031	1368033	.	-	0	transcript_id "Ledus.C7G014300.t1"; gene_id "Ledus.C7G014300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7937.t1 is derived from g12608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7947241	7947570	.	+	.	Ledus.S5G071500
Ledus.S5	AUGUSTUS	transcript	7947241	7947570	.	+	.	transcript_id "Ledus.S5G071500.t1"; gene_id "Ledus.S5G071500"
Ledus.S5	AUGUSTUS	start_codon	7947241	7947243	.	+	0	transcript_id "Ledus.S5G071500.t1"; gene_id "Ledus.S5G071500"
Ledus.S5	AUGUSTUS	CDS	7947241	7947570	0.92	+	0	transcript_id "Ledus.S5G071500.t1"; gene_id "Ledus.S5G071500"
Ledus.S5	AUGUSTUS	exon	7947241	7947570	.	+	.	transcript_id "Ledus.S5G071500.t1"; gene_id "Ledus.S5G071500"
Ledus.S5	AUGUSTUS	stop_codon	7947571	7947573	.	+	0	transcript_id "Ledus.S5G071500.t1"; gene_id "Ledus.S5G071500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1570.t1 is derived from g8431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10988112	10988912	.	-	.	Ledus.S2G145200
Ledus.S2	AUGUSTUS	transcript	10988112	10988912	.	-	.	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	stop_codon	10988109	10988111	.	-	0	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	CDS	10988112	10988157	0.97	-	1	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	exon	10988112	10988157	.	-	.	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	intron	10988158	10988255	.	-	.	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	CDS	10988256	10988395	0.97	-	0	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	exon	10988256	10988395	.	-	.	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	intron	10988396	10988500	.	-	.	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	CDS	10988501	10988778	1	-	2	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	exon	10988501	10988778	.	-	.	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	intron	10988779	10988893	.	-	.	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	CDS	10988894	10988912	1	-	0	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	exon	10988894	10988912	.	-	.	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
Ledus.S2	AUGUSTUS	start_codon	10988910	10988912	.	-	0	transcript_id "Ledus.S2G145200.t1"; gene_id "Ledus.S2G145200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8745.t1 is derived from g9775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1768993	1769884	.	-	.	Ledus.S3G022200
Ledus.S3	AUGUSTUS	transcript	1768993	1769884	.	-	.	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	stop_codon	1768990	1768992	.	-	0	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	CDS	1768993	1769046	0.88	-	0	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	exon	1768993	1769046	.	-	.	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	intron	1769047	1769134	.	-	.	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	CDS	1769135	1769139	0.8	-	2	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	exon	1769135	1769139	.	-	.	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	intron	1769140	1769207	.	-	.	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	CDS	1769208	1769218	0.88	-	1	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	exon	1769208	1769218	.	-	.	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	intron	1769219	1769305	.	-	.	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	CDS	1769306	1769328	0.89	-	0	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	exon	1769306	1769328	.	-	.	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	intron	1769329	1769611	.	-	.	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	CDS	1769612	1769732	0.89	-	1	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	exon	1769612	1769732	.	-	.	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	intron	1769733	1769825	.	-	.	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	CDS	1769826	1769884	0.87	-	0	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	exon	1769826	1769884	.	-	.	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
Ledus.S3	AUGUSTUS	start_codon	1769882	1769884	.	-	0	transcript_id "Ledus.S3G022200.t1"; gene_id "Ledus.S3G022200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4683.t1 is derived from g2121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18979472	18980838	.	-	.	Ledus.S1G210400
Ledus.S1	AUGUSTUS	transcript	18979472	18980838	.	-	.	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	stop_codon	18979469	18979471	.	-	0	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	CDS	18979472	18979939	0.99	-	0	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	exon	18979472	18979939	.	-	.	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	intron	18979940	18980031	.	-	.	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	CDS	18980032	18980098	1	-	1	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	exon	18980032	18980098	.	-	.	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	intron	18980099	18980181	.	-	.	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	CDS	18980182	18980219	1	-	0	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	exon	18980182	18980219	.	-	.	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	intron	18980220	18980332	.	-	.	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	CDS	18980333	18980464	0.98	-	0	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	exon	18980333	18980464	.	-	.	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	intron	18980465	18980586	.	-	.	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	CDS	18980587	18980838	0.92	-	0	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	exon	18980587	18980838	.	-	.	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
Ledus.S1	AUGUSTUS	start_codon	18980836	18980838	.	-	0	transcript_id "Ledus.S1G210400.t1"; gene_id "Ledus.S1G210400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6397.t1 is derived from g3840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31038662	31039343	.	+	.	Ledus.S1G381800
Ledus.S1	AUGUSTUS	transcript	31038662	31039343	.	+	.	transcript_id "Ledus.S1G381800.t1"; gene_id "Ledus.S1G381800"
Ledus.S1	AUGUSTUS	start_codon	31038662	31038664	.	+	0	transcript_id "Ledus.S1G381800.t1"; gene_id "Ledus.S1G381800"
Ledus.S1	AUGUSTUS	CDS	31038662	31038887	0.59	+	0	transcript_id "Ledus.S1G381800.t1"; gene_id "Ledus.S1G381800"
Ledus.S1	AUGUSTUS	exon	31038662	31038887	.	+	.	transcript_id "Ledus.S1G381800.t1"; gene_id "Ledus.S1G381800"
Ledus.S1	AUGUSTUS	intron	31038888	31038962	.	+	.	transcript_id "Ledus.S1G381800.t1"; gene_id "Ledus.S1G381800"
Ledus.S1	AUGUSTUS	CDS	31038963	31039200	1	+	2	transcript_id "Ledus.S1G381800.t1"; gene_id "Ledus.S1G381800"
Ledus.S1	AUGUSTUS	exon	31038963	31039200	.	+	.	transcript_id "Ledus.S1G381800.t1"; gene_id "Ledus.S1G381800"
Ledus.S1	AUGUSTUS	intron	31039201	31039294	.	+	.	transcript_id "Ledus.S1G381800.t1"; gene_id "Ledus.S1G381800"
Ledus.S1	AUGUSTUS	CDS	31039295	31039343	0.8	+	1	transcript_id "Ledus.S1G381800.t1"; gene_id "Ledus.S1G381800"
Ledus.S1	AUGUSTUS	exon	31039295	31039343	.	+	.	transcript_id "Ledus.S1G381800.t1"; gene_id "Ledus.S1G381800"
Ledus.S1	AUGUSTUS	stop_codon	31039344	31039346	.	+	0	transcript_id "Ledus.S1G381800.t1"; gene_id "Ledus.S1G381800"
# This transcript jg6983.t1 is derived from g6513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	525099	525590	.	-	.	Ledus.C7G004300
Ledus.C7	AUGUSTUS	transcript	525099	525590	.	-	.	transcript_id "Ledus.C7G004300.t1"; gene_id "Ledus.C7G004300"
Ledus.C7	AUGUSTUS	stop_codon	525096	525098	.	-	0	transcript_id "Ledus.C7G004300.t1"; gene_id "Ledus.C7G004300"
Ledus.C7	AUGUSTUS	CDS	525099	525590	0.57	-	0	transcript_id "Ledus.C7G004300.t1"; gene_id "Ledus.C7G004300"
Ledus.C7	AUGUSTUS	exon	525099	525590	.	-	.	transcript_id "Ledus.C7G004300.t1"; gene_id "Ledus.C7G004300"
Ledus.C7	AUGUSTUS	start_codon	525588	525590	.	-	0	transcript_id "Ledus.C7G004300.t1"; gene_id "Ledus.C7G004300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7255.t1 is derived from g11926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	506789	508711	.	-	.	Ledus.S5G003300
Ledus.S5	AUGUSTUS	transcript	506789	508711	.	-	.	transcript_id "Ledus.S5G003300.t1"; gene_id "Ledus.S5G003300"
Ledus.S5	AUGUSTUS	stop_codon	506786	506788	.	-	0	transcript_id "Ledus.S5G003300.t1"; gene_id "Ledus.S5G003300"
Ledus.S5	AUGUSTUS	CDS	506789	507676	0.99	-	0	transcript_id "Ledus.S5G003300.t1"; gene_id "Ledus.S5G003300"
Ledus.S5	AUGUSTUS	exon	506789	507676	.	-	.	transcript_id "Ledus.S5G003300.t1"; gene_id "Ledus.S5G003300"
Ledus.S5	AUGUSTUS	intron	507677	507745	.	-	.	transcript_id "Ledus.S5G003300.t1"; gene_id "Ledus.S5G003300"
Ledus.S5	AUGUSTUS	CDS	507746	508030	1	-	0	transcript_id "Ledus.S5G003300.t1"; gene_id "Ledus.S5G003300"
Ledus.S5	AUGUSTUS	exon	507746	508030	.	-	.	transcript_id "Ledus.S5G003300.t1"; gene_id "Ledus.S5G003300"
Ledus.S5	AUGUSTUS	intron	508031	508429	.	-	.	transcript_id "Ledus.S5G003300.t1"; gene_id "Ledus.S5G003300"
Ledus.S5	AUGUSTUS	CDS	508430	508711	0.76	-	0	transcript_id "Ledus.S5G003300.t1"; gene_id "Ledus.S5G003300"
Ledus.S5	AUGUSTUS	exon	508430	508711	.	-	.	transcript_id "Ledus.S5G003300.t1"; gene_id "Ledus.S5G003300"
Ledus.S5	AUGUSTUS	start_codon	508709	508711	.	-	0	transcript_id "Ledus.S5G003300.t1"; gene_id "Ledus.S5G003300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8489.t1 is derived from g13161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12180775	12181303	.	-	.	Ledus.S5G126700
Ledus.S5	AUGUSTUS	transcript	12180775	12181303	.	-	.	transcript_id "Ledus.S5G126700.t1"; gene_id "Ledus.S5G126700"
Ledus.S5	AUGUSTUS	stop_codon	12180772	12180774	.	-	0	transcript_id "Ledus.S5G126700.t1"; gene_id "Ledus.S5G126700"
Ledus.S5	AUGUSTUS	CDS	12180775	12180919	0.41	-	1	transcript_id "Ledus.S5G126700.t1"; gene_id "Ledus.S5G126700"
Ledus.S5	AUGUSTUS	exon	12180775	12180919	.	-	.	transcript_id "Ledus.S5G126700.t1"; gene_id "Ledus.S5G126700"
Ledus.S5	AUGUSTUS	intron	12180920	12181148	.	-	.	transcript_id "Ledus.S5G126700.t1"; gene_id "Ledus.S5G126700"
Ledus.S5	AUGUSTUS	CDS	12181149	12181303	0.72	-	0	transcript_id "Ledus.S5G126700.t1"; gene_id "Ledus.S5G126700"
Ledus.S5	AUGUSTUS	exon	12181149	12181303	.	-	.	transcript_id "Ledus.S5G126700.t1"; gene_id "Ledus.S5G126700"
Ledus.S5	AUGUSTUS	start_codon	12181301	12181303	.	-	0	transcript_id "Ledus.S5G126700.t1"; gene_id "Ledus.S5G126700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8650.t1 is derived from g9680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1083345	1084801	.	-	.	Ledus.S3G012700
Ledus.S3	AUGUSTUS	transcript	1083345	1084801	.	-	.	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	stop_codon	1083342	1083344	.	-	0	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	CDS	1083345	1083456	0.89	-	1	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	exon	1083345	1083456	.	-	.	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	intron	1083457	1083549	.	-	.	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	CDS	1083550	1083745	0.89	-	2	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	exon	1083550	1083745	.	-	.	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	intron	1083746	1083999	.	-	.	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	CDS	1084000	1084051	0.77	-	0	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	exon	1084000	1084051	.	-	.	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	intron	1084052	1084157	.	-	.	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	CDS	1084158	1084403	0.95	-	0	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	exon	1084158	1084403	.	-	.	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	intron	1084404	1084486	.	-	.	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	CDS	1084487	1084801	0.47	-	0	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	exon	1084487	1084801	.	-	.	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
Ledus.S3	AUGUSTUS	start_codon	1084799	1084801	.	-	0	transcript_id "Ledus.S3G012700.t1"; gene_id "Ledus.S3G012700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2076.t1 is derived from g8939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14579785	14582984	.	+	.	Ledus.S2G195800
Ledus.S2	AUGUSTUS	transcript	14579785	14582984	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	start_codon	14579785	14579787	.	+	0	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	CDS	14579785	14579881	0.4	+	0	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	exon	14579785	14579881	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	intron	14579882	14580026	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	CDS	14580027	14580097	1	+	2	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	exon	14580027	14580097	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	intron	14580098	14580184	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	CDS	14580185	14580655	0.99	+	0	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	exon	14580185	14580655	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	intron	14580656	14580745	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	CDS	14580746	14580899	0.94	+	0	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	exon	14580746	14580899	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	intron	14580900	14581036	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	CDS	14581037	14581218	0.74	+	2	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	exon	14581037	14581218	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	intron	14581219	14581366	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	CDS	14581367	14581542	0.51	+	0	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	exon	14581367	14581542	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	intron	14581543	14581659	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	CDS	14581660	14581717	0.48	+	1	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	exon	14581660	14581717	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	intron	14581718	14581822	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	CDS	14581823	14581941	0.49	+	0	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	exon	14581823	14581941	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	intron	14581942	14582229	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	CDS	14582230	14582319	1	+	1	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	exon	14582230	14582319	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	intron	14582320	14582520	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	CDS	14582521	14582635	1	+	1	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	exon	14582521	14582635	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	intron	14582636	14582807	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	CDS	14582808	14582984	0.99	+	0	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	exon	14582808	14582984	.	+	.	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
Ledus.S2	AUGUSTUS	stop_codon	14582985	14582987	.	+	0	transcript_id "Ledus.S2G195800.t1"; gene_id "Ledus.S2G195800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3860.t1 is derived from g1296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13208577	13210608	.	-	.	Ledus.S1G128100
Ledus.S1	AUGUSTUS	transcript	13208577	13210608	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	stop_codon	13208574	13208576	.	-	0	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	CDS	13208577	13208621	1	-	0	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	exon	13208577	13208621	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	intron	13208622	13208707	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	CDS	13208708	13208815	1	-	0	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	exon	13208708	13208815	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	intron	13208816	13208902	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	CDS	13208903	13209118	1	-	0	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	exon	13208903	13209118	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	intron	13209119	13209208	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	CDS	13209209	13209474	1	-	2	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	exon	13209209	13209474	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	intron	13209475	13209579	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	CDS	13209580	13209850	0.99	-	0	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	exon	13209580	13209850	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	intron	13209851	13209943	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	CDS	13209944	13210112	1	-	1	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	exon	13209944	13210112	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	intron	13210113	13210232	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	CDS	13210233	13210377	1	-	2	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	exon	13210233	13210377	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	intron	13210378	13210457	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	CDS	13210458	13210608	0.69	-	0	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	exon	13210458	13210608	.	-	.	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
Ledus.S1	AUGUSTUS	start_codon	13210606	13210608	.	-	0	transcript_id "Ledus.S1G128100.t1"; gene_id "Ledus.S1G128100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7640.t1 is derived from g12311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4770538	4771554	.	-	.	Ledus.S5G041800
Ledus.S5	AUGUSTUS	transcript	4770538	4771554	.	-	.	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	stop_codon	4770535	4770537	.	-	0	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	CDS	4770538	4770736	0.97	-	1	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	exon	4770538	4770736	.	-	.	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	intron	4770737	4770865	.	-	.	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	CDS	4770866	4770969	0.94	-	0	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	exon	4770866	4770969	.	-	.	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	intron	4770970	4771060	.	-	.	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	CDS	4771061	4771113	0.72	-	2	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	exon	4771061	4771113	.	-	.	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	intron	4771114	4771328	.	-	.	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	CDS	4771329	4771554	0.31	-	0	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	exon	4771329	4771554	.	-	.	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
Ledus.S5	AUGUSTUS	start_codon	4771552	4771554	.	-	0	transcript_id "Ledus.S5G041800.t1"; gene_id "Ledus.S5G041800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11149.t1 is derived from g4767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2159914	2160725	.	-	.	Ledus.S4G030500
Ledus.S4	AUGUSTUS	transcript	2159914	2160725	.	-	.	transcript_id "Ledus.S4G030500.t1"; gene_id "Ledus.S4G030500"
Ledus.S4	AUGUSTUS	stop_codon	2159911	2159913	.	-	0	transcript_id "Ledus.S4G030500.t1"; gene_id "Ledus.S4G030500"
Ledus.S4	AUGUSTUS	CDS	2159914	2159978	0.88	-	2	transcript_id "Ledus.S4G030500.t1"; gene_id "Ledus.S4G030500"
Ledus.S4	AUGUSTUS	exon	2159914	2159978	.	-	.	transcript_id "Ledus.S4G030500.t1"; gene_id "Ledus.S4G030500"
Ledus.S4	AUGUSTUS	intron	2159979	2160143	.	-	.	transcript_id "Ledus.S4G030500.t1"; gene_id "Ledus.S4G030500"
Ledus.S4	AUGUSTUS	CDS	2160144	2160403	0.78	-	1	transcript_id "Ledus.S4G030500.t1"; gene_id "Ledus.S4G030500"
Ledus.S4	AUGUSTUS	exon	2160144	2160403	.	-	.	transcript_id "Ledus.S4G030500.t1"; gene_id "Ledus.S4G030500"
Ledus.S4	AUGUSTUS	intron	2160404	2160504	.	-	.	transcript_id "Ledus.S4G030500.t1"; gene_id "Ledus.S4G030500"
Ledus.S4	AUGUSTUS	CDS	2160505	2160725	0.83	-	0	transcript_id "Ledus.S4G030500.t1"; gene_id "Ledus.S4G030500"
Ledus.S4	AUGUSTUS	exon	2160505	2160725	.	-	.	transcript_id "Ledus.S4G030500.t1"; gene_id "Ledus.S4G030500"
Ledus.S4	AUGUSTUS	start_codon	2160723	2160725	.	-	0	transcript_id "Ledus.S4G030500.t1"; gene_id "Ledus.S4G030500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2749.t1 is derived from g183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3024831	3025133	.	-	.	Ledus.S1G017000
Ledus.S1	AUGUSTUS	transcript	3024831	3025133	.	-	.	transcript_id "Ledus.S1G017000.t1"; gene_id "Ledus.S1G017000"
Ledus.S1	AUGUSTUS	stop_codon	3024828	3024830	.	-	0	transcript_id "Ledus.S1G017000.t1"; gene_id "Ledus.S1G017000"
Ledus.S1	AUGUSTUS	CDS	3024831	3025133	0.56	-	0	transcript_id "Ledus.S1G017000.t1"; gene_id "Ledus.S1G017000"
Ledus.S1	AUGUSTUS	exon	3024831	3025133	.	-	.	transcript_id "Ledus.S1G017000.t1"; gene_id "Ledus.S1G017000"
Ledus.S1	AUGUSTUS	start_codon	3025131	3025133	.	-	0	transcript_id "Ledus.S1G017000.t1"; gene_id "Ledus.S1G017000"
# This transcript jg8194.t2 is derived from g12865.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8194.t3 is derived from g12865.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8195.t1 is derived from g12866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9784308	9785423	.	+	.	Ledus.S5G097300
Ledus.S5	AUGUSTUS	transcript	9784308	9785423	.	+	.	transcript_id "Ledus.S5G097300.t1"; gene_id "Ledus.S5G097300"
Ledus.S5	AUGUSTUS	start_codon	9784308	9784310	.	+	0	transcript_id "Ledus.S5G097300.t1"; gene_id "Ledus.S5G097300"
Ledus.S5	AUGUSTUS	CDS	9784308	9785423	0.95	+	0	transcript_id "Ledus.S5G097300.t1"; gene_id "Ledus.S5G097300"
Ledus.S5	AUGUSTUS	exon	9784308	9785423	.	+	.	transcript_id "Ledus.S5G097300.t1"; gene_id "Ledus.S5G097300"
Ledus.S5	AUGUSTUS	stop_codon	9785424	9785426	.	+	0	transcript_id "Ledus.S5G097300.t1"; gene_id "Ledus.S5G097300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5650.t1 is derived from g3089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25569893	25571884	.	-	.	Ledus.S1G307100
Ledus.S1	AUGUSTUS	transcript	25569893	25571884	.	-	.	transcript_id "Ledus.S1G307100.t1"; gene_id "Ledus.S1G307100"
Ledus.S1	AUGUSTUS	stop_codon	25569890	25569892	.	-	0	transcript_id "Ledus.S1G307100.t1"; gene_id "Ledus.S1G307100"
Ledus.S1	AUGUSTUS	CDS	25569893	25570448	0.49	-	1	transcript_id "Ledus.S1G307100.t1"; gene_id "Ledus.S1G307100"
Ledus.S1	AUGUSTUS	exon	25569893	25570448	.	-	.	transcript_id "Ledus.S1G307100.t1"; gene_id "Ledus.S1G307100"
Ledus.S1	AUGUSTUS	intron	25570449	25570587	.	-	.	transcript_id "Ledus.S1G307100.t1"; gene_id "Ledus.S1G307100"
Ledus.S1	AUGUSTUS	CDS	25570588	25571033	1	-	0	transcript_id "Ledus.S1G307100.t1"; gene_id "Ledus.S1G307100"
Ledus.S1	AUGUSTUS	exon	25570588	25571033	.	-	.	transcript_id "Ledus.S1G307100.t1"; gene_id "Ledus.S1G307100"
Ledus.S1	AUGUSTUS	intron	25571034	25571413	.	-	.	transcript_id "Ledus.S1G307100.t1"; gene_id "Ledus.S1G307100"
Ledus.S1	AUGUSTUS	CDS	25571414	25571884	0.96	-	0	transcript_id "Ledus.S1G307100.t1"; gene_id "Ledus.S1G307100"
Ledus.S1	AUGUSTUS	exon	25571414	25571884	.	-	.	transcript_id "Ledus.S1G307100.t1"; gene_id "Ledus.S1G307100"
Ledus.S1	AUGUSTUS	start_codon	25571882	25571884	.	-	0	transcript_id "Ledus.S1G307100.t1"; gene_id "Ledus.S1G307100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg792.t1 is derived from g7653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5126758	5128457	.	+	.	Ledus.S2G067400
Ledus.S2	AUGUSTUS	transcript	5126758	5128457	.	+	.	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	start_codon	5126758	5126760	.	+	0	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	CDS	5126758	5126918	0.74	+	0	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	exon	5126758	5126918	.	+	.	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	intron	5126919	5127076	.	+	.	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	CDS	5127077	5127285	1	+	1	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	exon	5127077	5127285	.	+	.	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	intron	5127286	5127371	.	+	.	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	CDS	5127372	5127607	0.95	+	2	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	exon	5127372	5127607	.	+	.	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	intron	5127608	5127722	.	+	.	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	CDS	5127723	5128457	0.98	+	0	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	exon	5127723	5128457	.	+	.	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
Ledus.S2	AUGUSTUS	stop_codon	5128458	5128460	.	+	0	transcript_id "Ledus.S2G067400.t1"; gene_id "Ledus.S2G067400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1146.t1 is derived from g8007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7925999	7926349	.	+	.	Ledus.S2G102800
Ledus.S2	AUGUSTUS	transcript	7925999	7926349	.	+	.	transcript_id "Ledus.S2G102800.t1"; gene_id "Ledus.S2G102800"
Ledus.S2	AUGUSTUS	start_codon	7925999	7926001	.	+	0	transcript_id "Ledus.S2G102800.t1"; gene_id "Ledus.S2G102800"
Ledus.S2	AUGUSTUS	CDS	7925999	7926349	0.87	+	0	transcript_id "Ledus.S2G102800.t1"; gene_id "Ledus.S2G102800"
Ledus.S2	AUGUSTUS	exon	7925999	7926349	.	+	.	transcript_id "Ledus.S2G102800.t1"; gene_id "Ledus.S2G102800"
Ledus.S2	AUGUSTUS	stop_codon	7926350	7926352	.	+	0	transcript_id "Ledus.S2G102800.t1"; gene_id "Ledus.S2G102800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3132.t1 is derived from g567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6170294	6175065	.	-	.	Ledus.S1G055300
Ledus.S1	AUGUSTUS	transcript	6170294	6175065	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	stop_codon	6170291	6170293	.	-	0	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6170294	6170442	0.45	-	2	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6170294	6170442	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6170443	6170777	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6170778	6170827	0.68	-	1	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6170778	6170827	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6170828	6170927	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6170928	6171078	1	-	2	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6170928	6171078	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6171079	6171170	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6171171	6171243	1	-	0	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6171171	6171243	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6171244	6171337	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6171338	6171504	1	-	2	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6171338	6171504	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6171505	6171607	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6171608	6171731	0.99	-	0	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6171608	6171731	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6171732	6171837	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6171838	6171894	0.88	-	0	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6171838	6171894	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6171895	6171961	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6171962	6172050	1	-	2	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6171962	6172050	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6172051	6172181	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6172182	6172293	1	-	0	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6172182	6172293	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6172294	6172504	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6172505	6172585	1	-	0	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6172505	6172585	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6172586	6172725	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6172726	6172784	0.99	-	2	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6172726	6172784	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6172785	6172910	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6172911	6172971	0.99	-	0	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6172911	6172971	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6172972	6173157	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6173158	6173224	1	-	1	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6173158	6173224	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6173225	6173328	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6173329	6173393	1	-	0	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6173329	6173393	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6173394	6173621	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6173622	6173679	1	-	1	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6173622	6173679	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6173680	6173847	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6173848	6173915	1	-	0	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6173848	6173915	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6173916	6174021	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6174022	6174082	0.89	-	1	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6174022	6174082	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6174083	6174192	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6174193	6174235	0.89	-	2	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6174193	6174235	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6174236	6174339	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6174340	6174383	0.92	-	1	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6174340	6174383	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6174384	6174458	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6174459	6174523	1	-	0	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6174459	6174523	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6174524	6174618	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6174619	6174677	1	-	2	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6174619	6174677	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	intron	6174678	6174821	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	CDS	6174822	6175065	0.98	-	0	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	exon	6174822	6175065	.	-	.	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
Ledus.S1	AUGUSTUS	start_codon	6175063	6175065	.	-	0	transcript_id "Ledus.S1G055300.t1"; gene_id "Ledus.S1G055300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2314.t1 is derived from g9177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17135756	17138025	.	-	.	Ledus.S2G219600
Ledus.S2	AUGUSTUS	transcript	17135756	17138025	.	-	.	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	stop_codon	17135753	17135755	.	-	0	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	CDS	17135756	17135846	0.7	-	1	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	exon	17135756	17135846	.	-	.	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	intron	17135847	17135956	.	-	.	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	CDS	17135957	17136308	0.7	-	2	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	exon	17135957	17136308	.	-	.	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	intron	17136309	17136408	.	-	.	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	CDS	17136409	17136540	0.85	-	2	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	exon	17136409	17136540	.	-	.	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	intron	17136541	17136656	.	-	.	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	CDS	17136657	17138025	0.99	-	0	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	exon	17136657	17138025	.	-	.	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
Ledus.S2	AUGUSTUS	start_codon	17138023	17138025	.	-	0	transcript_id "Ledus.S2G219600.t1"; gene_id "Ledus.S2G219600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10703.t1 is derived from g11733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17280791	17284873	.	-	.	Ledus.S3G218000
Ledus.S3	AUGUSTUS	transcript	17280791	17284873	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	stop_codon	17280788	17280790	.	-	0	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	CDS	17280791	17281816	0.99	-	0	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	exon	17280791	17281816	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	intron	17281817	17281923	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	CDS	17281924	17281992	0.85	-	0	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	exon	17281924	17281992	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	intron	17281993	17282108	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	CDS	17282109	17282254	0.89	-	2	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	exon	17282109	17282254	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	intron	17282255	17282367	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	CDS	17282368	17282567	0.77	-	1	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	exon	17282368	17282567	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	intron	17282568	17282667	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	CDS	17282668	17282995	0.98	-	2	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	exon	17282668	17282995	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	intron	17282996	17283112	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	CDS	17283113	17283250	0.98	-	2	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	exon	17283113	17283250	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	intron	17283251	17283347	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	CDS	17283348	17283603	1	-	0	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	exon	17283348	17283603	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	intron	17283604	17283716	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	CDS	17283717	17283814	0.95	-	2	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	exon	17283717	17283814	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	intron	17283815	17283889	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	CDS	17283890	17284147	1	-	2	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	exon	17283890	17284147	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	intron	17284148	17284239	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	CDS	17284240	17284873	0.42	-	0	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	exon	17284240	17284873	.	-	.	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
Ledus.S3	AUGUSTUS	start_codon	17284871	17284873	.	-	0	transcript_id "Ledus.S3G218000.t1"; gene_id "Ledus.S3G218000"
# This transcript jg12278.t2 is derived from g5898.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12278.t3 is derived from g5898.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12278.t4 is derived from g5898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12279.t1 is derived from g5899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10825445	10827311	.	+	.	Ledus.S4G143500
Ledus.S4	AUGUSTUS	transcript	10825445	10827311	.	+	.	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	start_codon	10825445	10825447	.	+	0	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	CDS	10825445	10825890	1	+	0	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	exon	10825445	10825890	.	+	.	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	intron	10825891	10825983	.	+	.	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	CDS	10825984	10826209	1	+	1	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	exon	10825984	10826209	.	+	.	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	intron	10826210	10826334	.	+	.	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	CDS	10826335	10826580	1	+	0	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	exon	10826335	10826580	.	+	.	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	intron	10826581	10826656	.	+	.	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	CDS	10826657	10826767	1	+	0	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	exon	10826657	10826767	.	+	.	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	intron	10826768	10826908	.	+	.	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	CDS	10826909	10827040	0.86	+	0	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	exon	10826909	10827040	.	+	.	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	intron	10827041	10827152	.	+	.	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	CDS	10827153	10827311	0.96	+	0	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	exon	10827153	10827311	.	+	.	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
Ledus.S4	AUGUSTUS	stop_codon	10827312	10827314	.	+	0	transcript_id "Ledus.S4G143500.t1"; gene_id "Ledus.S4G143500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7426.t1 is derived from g12097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2443805	2444749	.	-	.	Ledus.S5G020400
Ledus.S5	AUGUSTUS	transcript	2443805	2444749	.	-	.	transcript_id "Ledus.S5G020400.t1"; gene_id "Ledus.S5G020400"
Ledus.S5	AUGUSTUS	stop_codon	2443802	2443804	.	-	0	transcript_id "Ledus.S5G020400.t1"; gene_id "Ledus.S5G020400"
Ledus.S5	AUGUSTUS	CDS	2443805	2444287	0.64	-	0	transcript_id "Ledus.S5G020400.t1"; gene_id "Ledus.S5G020400"
Ledus.S5	AUGUSTUS	exon	2443805	2444287	.	-	.	transcript_id "Ledus.S5G020400.t1"; gene_id "Ledus.S5G020400"
Ledus.S5	AUGUSTUS	intron	2444288	2444391	.	-	.	transcript_id "Ledus.S5G020400.t1"; gene_id "Ledus.S5G020400"
Ledus.S5	AUGUSTUS	CDS	2444392	2444514	0.71	-	0	transcript_id "Ledus.S5G020400.t1"; gene_id "Ledus.S5G020400"
Ledus.S5	AUGUSTUS	exon	2444392	2444514	.	-	.	transcript_id "Ledus.S5G020400.t1"; gene_id "Ledus.S5G020400"
Ledus.S5	AUGUSTUS	intron	2444515	2444638	.	-	.	transcript_id "Ledus.S5G020400.t1"; gene_id "Ledus.S5G020400"
Ledus.S5	AUGUSTUS	CDS	2444639	2444749	0.98	-	0	transcript_id "Ledus.S5G020400.t1"; gene_id "Ledus.S5G020400"
Ledus.S5	AUGUSTUS	exon	2444639	2444749	.	-	.	transcript_id "Ledus.S5G020400.t1"; gene_id "Ledus.S5G020400"
Ledus.S5	AUGUSTUS	start_codon	2444747	2444749	.	-	0	transcript_id "Ledus.S5G020400.t1"; gene_id "Ledus.S5G020400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg410.t1 is derived from g7271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2259521	2260423	.	-	.	Ledus.S2G029200
Ledus.S2	AUGUSTUS	transcript	2259521	2260423	.	-	.	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	stop_codon	2259518	2259520	.	-	0	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	CDS	2259521	2259547	0.9	-	0	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	exon	2259521	2259547	.	-	.	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	intron	2259548	2259686	.	-	.	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	CDS	2259687	2259748	0.9	-	2	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	exon	2259687	2259748	.	-	.	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	intron	2259749	2259845	.	-	.	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	CDS	2259846	2259869	0.95	-	2	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	exon	2259846	2259869	.	-	.	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	intron	2259870	2259920	.	-	.	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	CDS	2259921	2259932	0.96	-	2	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	exon	2259921	2259932	.	-	.	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	intron	2259933	2260102	.	-	.	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	CDS	2260103	2260207	1	-	2	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	exon	2260103	2260207	.	-	.	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	intron	2260208	2260395	.	-	.	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	CDS	2260396	2260423	0.94	-	0	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	exon	2260396	2260423	.	-	.	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
Ledus.S2	AUGUSTUS	start_codon	2260421	2260423	.	-	0	transcript_id "Ledus.S2G029200.t1"; gene_id "Ledus.S2G029200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10964.t1 is derived from g4582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	926485	929446	.	+	.	Ledus.S4G012000
Ledus.S4	AUGUSTUS	transcript	926485	929446	.	+	.	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	start_codon	926485	926487	.	+	0	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	CDS	926485	926657	0.9	+	0	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	exon	926485	926657	.	+	.	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	intron	926658	927366	.	+	.	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	CDS	927367	927498	0.99	+	1	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	exon	927367	927498	.	+	.	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	intron	927499	927600	.	+	.	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	CDS	927601	928695	0.99	+	1	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	exon	927601	928695	.	+	.	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	intron	928696	929001	.	+	.	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	CDS	929002	929165	0.41	+	1	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	exon	929002	929165	.	+	.	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	intron	929166	929351	.	+	.	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	CDS	929352	929446	0.4	+	2	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	exon	929352	929446	.	+	.	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
Ledus.S4	AUGUSTUS	stop_codon	929447	929449	.	+	0	transcript_id "Ledus.S4G012000.t1"; gene_id "Ledus.S4G012000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8420.t1 is derived from g13092.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11555146	11556949	.	-	.	Ledus.S5G119800
Ledus.S5	AUGUSTUS	transcript	11555146	11556949	.	-	.	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	stop_codon	11555143	11555145	.	-	0	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	CDS	11555146	11555388	1	-	0	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	exon	11555146	11555388	.	-	.	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	intron	11555389	11555469	.	-	.	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	CDS	11555470	11555767	0.99	-	1	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	exon	11555470	11555767	.	-	.	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	intron	11555768	11556049	.	-	.	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	CDS	11556050	11556175	1	-	1	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	exon	11556050	11556175	.	-	.	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	intron	11556176	11556272	.	-	.	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	CDS	11556273	11556317	1	-	1	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	exon	11556273	11556317	.	-	.	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	intron	11556318	11556455	.	-	.	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	CDS	11556456	11556949	0.99	-	0	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	exon	11556456	11556949	.	-	.	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
Ledus.S5	AUGUSTUS	start_codon	11556947	11556949	.	-	0	transcript_id "Ledus.S5G119800.t1"; gene_id "Ledus.S5G119800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9196.t1 is derived from g10226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5315619	5317221	.	+	.	Ledus.S3G067300
Ledus.S3	AUGUSTUS	transcript	5315619	5317221	.	+	.	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	start_codon	5315619	5315621	.	+	0	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	CDS	5315619	5315817	1	+	0	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	exon	5315619	5315817	.	+	.	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	intron	5315818	5315902	.	+	.	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	CDS	5315903	5315970	1	+	2	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	exon	5315903	5315970	.	+	.	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	intron	5315971	5316043	.	+	.	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	CDS	5316044	5316280	1	+	0	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	exon	5316044	5316280	.	+	.	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	intron	5316281	5316354	.	+	.	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	CDS	5316355	5316645	0.99	+	0	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	exon	5316355	5316645	.	+	.	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	intron	5316646	5316768	.	+	.	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	CDS	5316769	5316956	1	+	0	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	exon	5316769	5316956	.	+	.	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	intron	5316957	5317031	.	+	.	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	CDS	5317032	5317221	0.98	+	1	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	exon	5317032	5317221	.	+	.	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
Ledus.S3	AUGUSTUS	stop_codon	5317222	5317224	.	+	0	transcript_id "Ledus.S3G067300.t1"; gene_id "Ledus.S3G067300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6367.t1 is derived from g3810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30796180	30797802	.	+	.	Ledus.S1G378800
Ledus.S1	AUGUSTUS	transcript	30796180	30797802	.	+	.	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	start_codon	30796180	30796182	.	+	0	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	CDS	30796180	30796294	0.42	+	0	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	exon	30796180	30796294	.	+	.	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	intron	30796295	30796907	.	+	.	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	CDS	30796908	30797142	1	+	2	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	exon	30796908	30797142	.	+	.	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	intron	30797143	30797368	.	+	.	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	CDS	30797369	30797498	1	+	1	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	exon	30797369	30797498	.	+	.	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	intron	30797499	30797718	.	+	.	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	CDS	30797719	30797802	0.79	+	0	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	exon	30797719	30797802	.	+	.	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
Ledus.S1	AUGUSTUS	stop_codon	30797803	30797805	.	+	0	transcript_id "Ledus.S1G378800.t1"; gene_id "Ledus.S1G378800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6831.t1 is derived from g4275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34553185	34554513	.	+	.	Ledus.S1G425200
Ledus.S1	AUGUSTUS	transcript	34553185	34554513	.	+	.	transcript_id "Ledus.S1G425200.t1"; gene_id "Ledus.S1G425200"
Ledus.S1	AUGUSTUS	start_codon	34553185	34553187	.	+	0	transcript_id "Ledus.S1G425200.t1"; gene_id "Ledus.S1G425200"
Ledus.S1	AUGUSTUS	CDS	34553185	34554267	0.45	+	0	transcript_id "Ledus.S1G425200.t1"; gene_id "Ledus.S1G425200"
Ledus.S1	AUGUSTUS	exon	34553185	34554267	.	+	.	transcript_id "Ledus.S1G425200.t1"; gene_id "Ledus.S1G425200"
Ledus.S1	AUGUSTUS	intron	34554268	34554356	.	+	.	transcript_id "Ledus.S1G425200.t1"; gene_id "Ledus.S1G425200"
Ledus.S1	AUGUSTUS	CDS	34554357	34554399	0.95	+	0	transcript_id "Ledus.S1G425200.t1"; gene_id "Ledus.S1G425200"
Ledus.S1	AUGUSTUS	exon	34554357	34554399	.	+	.	transcript_id "Ledus.S1G425200.t1"; gene_id "Ledus.S1G425200"
Ledus.S1	AUGUSTUS	intron	34554400	34554481	.	+	.	transcript_id "Ledus.S1G425200.t1"; gene_id "Ledus.S1G425200"
Ledus.S1	AUGUSTUS	CDS	34554482	34554513	1	+	2	transcript_id "Ledus.S1G425200.t1"; gene_id "Ledus.S1G425200"
Ledus.S1	AUGUSTUS	exon	34554482	34554513	.	+	.	transcript_id "Ledus.S1G425200.t1"; gene_id "Ledus.S1G425200"
Ledus.S1	AUGUSTUS	stop_codon	34554514	34554516	.	+	0	transcript_id "Ledus.S1G425200.t1"; gene_id "Ledus.S1G425200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2943.t1 is derived from g378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4759125	4760522	.	+	.	Ledus.S1G036400
Ledus.S1	AUGUSTUS	transcript	4759125	4760522	.	+	.	transcript_id "Ledus.S1G036400.t1"; gene_id "Ledus.S1G036400"
Ledus.S1	AUGUSTUS	start_codon	4759125	4759127	.	+	0	transcript_id "Ledus.S1G036400.t1"; gene_id "Ledus.S1G036400"
Ledus.S1	AUGUSTUS	CDS	4759125	4760522	0.6	+	0	transcript_id "Ledus.S1G036400.t1"; gene_id "Ledus.S1G036400"
Ledus.S1	AUGUSTUS	exon	4759125	4760522	.	+	.	transcript_id "Ledus.S1G036400.t1"; gene_id "Ledus.S1G036400"
Ledus.S1	AUGUSTUS	stop_codon	4760523	4760525	.	+	0	transcript_id "Ledus.S1G036400.t1"; gene_id "Ledus.S1G036400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1608.t1 is derived from g8469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11335296	11337009	.	+	.	Ledus.S2G149000
Ledus.S2	AUGUSTUS	transcript	11335296	11337009	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	start_codon	11335296	11335298	.	+	0	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11335296	11335495	1	+	0	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11335296	11335495	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11335496	11335635	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11335636	11335737	1	+	1	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11335636	11335737	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11335738	11335863	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11335864	11335975	1	+	1	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11335864	11335975	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11335976	11336045	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11336046	11336161	0.87	+	0	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11336046	11336161	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11336162	11336277	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11336278	11336472	0.89	+	1	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11336278	11336472	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11336473	11336564	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11336565	11336716	1	+	1	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11336565	11336716	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11336717	11336794	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11336795	11337009	1	+	2	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11336795	11337009	.	+	.	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	stop_codon	11337010	11337012	.	+	0	transcript_id "Ledus.S2G149000.t1"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	transcript	11335296	11337009	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	start_codon	11335296	11335298	.	+	0	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11335296	11335495	1	+	0	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11335296	11335495	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11335496	11335635	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11335636	11335737	1	+	1	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11335636	11335737	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11335738	11335863	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11335864	11335975	1	+	1	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11335864	11335975	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11335976	11336045	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11336046	11336161	0.98	+	0	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11336046	11336161	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11336162	11336242	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11336243	11336293	0.53	+	1	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11336243	11336293	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11336294	11336409	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11336410	11336472	0.63	+	1	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11336410	11336472	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11336473	11336564	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11336565	11336716	1	+	1	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11336565	11336716	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	intron	11336717	11336794	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	CDS	11336795	11337009	1	+	2	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	exon	11336795	11337009	.	+	.	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
Ledus.S2	AUGUSTUS	stop_codon	11337010	11337012	.	+	0	transcript_id "Ledus.S2G149000.t2"; gene_id "Ledus.S2G149000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8001.t1 is derived from g12672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8415624	8416211	.	+	.	Ledus.S5G077900
Ledus.S5	AUGUSTUS	transcript	8415624	8416211	.	+	.	transcript_id "Ledus.S5G077900.t1"; gene_id "Ledus.S5G077900"
Ledus.S5	AUGUSTUS	start_codon	8415624	8415626	.	+	0	transcript_id "Ledus.S5G077900.t1"; gene_id "Ledus.S5G077900"
Ledus.S5	AUGUSTUS	CDS	8415624	8416211	0.64	+	0	transcript_id "Ledus.S5G077900.t1"; gene_id "Ledus.S5G077900"
Ledus.S5	AUGUSTUS	exon	8415624	8416211	.	+	.	transcript_id "Ledus.S5G077900.t1"; gene_id "Ledus.S5G077900"
Ledus.S5	AUGUSTUS	stop_codon	8416212	8416214	.	+	0	transcript_id "Ledus.S5G077900.t1"; gene_id "Ledus.S5G077900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2692.t1 is derived from g125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1942547	1943494	.	-	.	Ledus.S1G011300
Ledus.S1	AUGUSTUS	transcript	1942547	1943494	.	-	.	transcript_id "Ledus.S1G011300.t1"; gene_id "Ledus.S1G011300"
Ledus.S1	AUGUSTUS	stop_codon	1942544	1942546	.	-	0	transcript_id "Ledus.S1G011300.t1"; gene_id "Ledus.S1G011300"
Ledus.S1	AUGUSTUS	CDS	1942547	1943494	0.34	-	0	transcript_id "Ledus.S1G011300.t1"; gene_id "Ledus.S1G011300"
Ledus.S1	AUGUSTUS	exon	1942547	1943494	.	-	.	transcript_id "Ledus.S1G011300.t1"; gene_id "Ledus.S1G011300"
Ledus.S1	AUGUSTUS	start_codon	1943492	1943494	.	-	0	transcript_id "Ledus.S1G011300.t1"; gene_id "Ledus.S1G011300"
# This transcript jg6554.t2 is derived from g3997.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6554.t3 is derived from g3997.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6555.t1 is derived from g3998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32308601	32308807	.	+	.	Ledus.S1G397600
Ledus.S1	AUGUSTUS	transcript	32308601	32308807	.	+	.	transcript_id "Ledus.S1G397600.t1"; gene_id "Ledus.S1G397600"
Ledus.S1	AUGUSTUS	start_codon	32308601	32308603	.	+	0	transcript_id "Ledus.S1G397600.t1"; gene_id "Ledus.S1G397600"
Ledus.S1	AUGUSTUS	CDS	32308601	32308807	0.57	+	0	transcript_id "Ledus.S1G397600.t1"; gene_id "Ledus.S1G397600"
Ledus.S1	AUGUSTUS	exon	32308601	32308807	.	+	.	transcript_id "Ledus.S1G397600.t1"; gene_id "Ledus.S1G397600"
Ledus.S1	AUGUSTUS	stop_codon	32308808	32308810	.	+	0	transcript_id "Ledus.S1G397600.t1"; gene_id "Ledus.S1G397600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7856.t1 is derived from g12527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7502740	7503338	.	+	.	Ledus.S5G063400
Ledus.S5	AUGUSTUS	transcript	7502740	7503338	.	+	.	transcript_id "Ledus.S5G063400.t1"; gene_id "Ledus.S5G063400"
Ledus.S5	AUGUSTUS	start_codon	7502740	7502742	.	+	0	transcript_id "Ledus.S5G063400.t1"; gene_id "Ledus.S5G063400"
Ledus.S5	AUGUSTUS	CDS	7502740	7502802	0.94	+	0	transcript_id "Ledus.S5G063400.t1"; gene_id "Ledus.S5G063400"
Ledus.S5	AUGUSTUS	exon	7502740	7502802	.	+	.	transcript_id "Ledus.S5G063400.t1"; gene_id "Ledus.S5G063400"
Ledus.S5	AUGUSTUS	intron	7502803	7502883	.	+	.	transcript_id "Ledus.S5G063400.t1"; gene_id "Ledus.S5G063400"
Ledus.S5	AUGUSTUS	CDS	7502884	7503052	1	+	0	transcript_id "Ledus.S5G063400.t1"; gene_id "Ledus.S5G063400"
Ledus.S5	AUGUSTUS	exon	7502884	7503052	.	+	.	transcript_id "Ledus.S5G063400.t1"; gene_id "Ledus.S5G063400"
Ledus.S5	AUGUSTUS	intron	7503053	7503147	.	+	.	transcript_id "Ledus.S5G063400.t1"; gene_id "Ledus.S5G063400"
Ledus.S5	AUGUSTUS	CDS	7503148	7503338	0.99	+	2	transcript_id "Ledus.S5G063400.t1"; gene_id "Ledus.S5G063400"
Ledus.S5	AUGUSTUS	exon	7503148	7503338	.	+	.	transcript_id "Ledus.S5G063400.t1"; gene_id "Ledus.S5G063400"
Ledus.S5	AUGUSTUS	stop_codon	7503339	7503341	.	+	0	transcript_id "Ledus.S5G063400.t1"; gene_id "Ledus.S5G063400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10902.t1 is derived from g4520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	383813	386719	.	+	.	Ledus.S4G005800
Ledus.S4	AUGUSTUS	transcript	383813	386719	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	start_codon	383813	383815	.	+	0	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	383813	383870	0.97	+	0	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	383813	383870	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	383871	384067	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	384068	384165	1	+	2	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	384068	384165	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	384166	384262	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	384263	384363	1	+	0	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	384263	384363	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	384364	384448	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	384449	384527	1	+	1	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	384449	384527	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	384528	384631	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	384632	384692	1	+	0	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	384632	384692	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	384693	384778	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	384779	384825	1	+	2	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	384779	384825	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	384826	384911	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	384912	385004	1	+	0	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	384912	385004	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	385005	385072	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	385073	385163	1	+	0	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	385073	385163	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	385164	385248	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	385249	385297	1	+	2	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	385249	385297	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	385298	385470	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	385471	385587	1	+	1	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	385471	385587	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	385588	385692	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	385693	385840	0.8	+	1	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	385693	385840	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	385841	385919	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	385920	386012	1	+	0	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	385920	386012	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	386013	386111	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	386112	386180	1	+	0	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	386112	386180	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	386181	386270	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	386271	386313	1	+	0	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	386271	386313	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	386314	386397	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	386398	386486	1	+	2	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	386398	386486	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	intron	386487	386707	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	CDS	386708	386719	1	+	0	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	exon	386708	386719	.	+	.	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
Ledus.S4	AUGUSTUS	stop_codon	386720	386722	.	+	0	transcript_id "Ledus.S4G005800.t1"; gene_id "Ledus.S4G005800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg349.t1 is derived from g7210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1852910	1856150	.	+	.	Ledus.S2G023100
Ledus.S2	AUGUSTUS	transcript	1852910	1856150	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	start_codon	1852910	1852912	.	+	0	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	CDS	1852910	1852929	0.49	+	0	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	exon	1852910	1852929	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	intron	1852930	1853126	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	CDS	1853127	1853775	0.6	+	1	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	exon	1853127	1853775	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	intron	1853776	1853852	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	CDS	1853853	1854293	1	+	0	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	exon	1853853	1854293	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	intron	1854294	1854378	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	CDS	1854379	1854521	1	+	0	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	exon	1854379	1854521	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	intron	1854522	1854600	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	CDS	1854601	1854691	1	+	1	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	exon	1854601	1854691	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	intron	1854692	1854780	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	CDS	1854781	1854914	1	+	0	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	exon	1854781	1854914	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	intron	1854915	1855007	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	CDS	1855008	1855077	1	+	1	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	exon	1855008	1855077	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	intron	1855078	1855162	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	CDS	1855163	1855237	0.98	+	0	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	exon	1855163	1855237	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	intron	1855238	1855340	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	CDS	1855341	1856150	1	+	0	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	exon	1855341	1856150	.	+	.	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
Ledus.S2	AUGUSTUS	stop_codon	1856151	1856153	.	+	0	transcript_id "Ledus.S2G023100.t1"; gene_id "Ledus.S2G023100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5423.t1 is derived from g2862.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24070583	24074377	.	+	.	Ledus.S1G284400
Ledus.S1	AUGUSTUS	transcript	24070583	24074377	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	start_codon	24070583	24070585	.	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	CDS	24070583	24070718	0.55	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	exon	24070583	24070718	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	intron	24070719	24070893	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	CDS	24070894	24071072	1	+	2	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	exon	24070894	24071072	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	intron	24071073	24071170	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	CDS	24071171	24071278	0.99	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	exon	24071171	24071278	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	intron	24071279	24071400	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	CDS	24071401	24071586	0.99	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	exon	24071401	24071586	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	intron	24071587	24071674	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	CDS	24071675	24072139	0.93	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	exon	24071675	24072139	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	intron	24072140	24072266	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	CDS	24072267	24072362	1	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	exon	24072267	24072362	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	intron	24072363	24072501	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	CDS	24072502	24072690	1	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	exon	24072502	24072690	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	intron	24072691	24072813	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	CDS	24072814	24073041	1	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	exon	24072814	24073041	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	intron	24073042	24073245	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	CDS	24073246	24073392	1	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	exon	24073246	24073392	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	intron	24073393	24073492	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	CDS	24073493	24073681	1	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	exon	24073493	24073681	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	intron	24073682	24073765	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	CDS	24073766	24073885	1	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	exon	24073766	24073885	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	intron	24073886	24073999	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	CDS	24074000	24074377	0.98	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	exon	24074000	24074377	.	+	.	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
Ledus.S1	AUGUSTUS	stop_codon	24074378	24074380	.	+	0	transcript_id "Ledus.S1G284400.t1"; gene_id "Ledus.S1G284400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8681.t1 is derived from g9711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1337800	1340761	.	+	.	Ledus.S3G015800
Ledus.S3	AUGUSTUS	transcript	1337800	1340761	.	+	.	transcript_id "Ledus.S3G015800.t1"; gene_id "Ledus.S3G015800"
Ledus.S3	AUGUSTUS	start_codon	1337800	1337802	.	+	0	transcript_id "Ledus.S3G015800.t1"; gene_id "Ledus.S3G015800"
Ledus.S3	AUGUSTUS	CDS	1337800	1337912	0.69	+	0	transcript_id "Ledus.S3G015800.t1"; gene_id "Ledus.S3G015800"
Ledus.S3	AUGUSTUS	exon	1337800	1337912	.	+	.	transcript_id "Ledus.S3G015800.t1"; gene_id "Ledus.S3G015800"
Ledus.S3	AUGUSTUS	intron	1337913	1338092	.	+	.	transcript_id "Ledus.S3G015800.t1"; gene_id "Ledus.S3G015800"
Ledus.S3	AUGUSTUS	CDS	1338093	1338485	0.94	+	1	transcript_id "Ledus.S3G015800.t1"; gene_id "Ledus.S3G015800"
Ledus.S3	AUGUSTUS	exon	1338093	1338485	.	+	.	transcript_id "Ledus.S3G015800.t1"; gene_id "Ledus.S3G015800"
Ledus.S3	AUGUSTUS	intron	1338486	1338585	.	+	.	transcript_id "Ledus.S3G015800.t1"; gene_id "Ledus.S3G015800"
Ledus.S3	AUGUSTUS	CDS	1338586	1340761	0.71	+	1	transcript_id "Ledus.S3G015800.t1"; gene_id "Ledus.S3G015800"
Ledus.S3	AUGUSTUS	exon	1338586	1340761	.	+	.	transcript_id "Ledus.S3G015800.t1"; gene_id "Ledus.S3G015800"
Ledus.S3	AUGUSTUS	stop_codon	1340762	1340764	.	+	0	transcript_id "Ledus.S3G015800.t1"; gene_id "Ledus.S3G015800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8365.t1 is derived from g13037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11151812	11152763	.	-	.	Ledus.S5G114300
Ledus.S5	AUGUSTUS	transcript	11151812	11152763	.	-	.	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	stop_codon	11151809	11151811	.	-	0	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	CDS	11151812	11151937	0.99	-	0	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	exon	11151812	11151937	.	-	.	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	intron	11151938	11152030	.	-	.	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	CDS	11152031	11152153	1	-	0	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	exon	11152031	11152153	.	-	.	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	intron	11152154	11152236	.	-	.	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	CDS	11152237	11152341	1	-	0	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	exon	11152237	11152341	.	-	.	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	intron	11152342	11152442	.	-	.	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	CDS	11152443	11152515	0.99	-	1	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	exon	11152443	11152515	.	-	.	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	intron	11152516	11152719	.	-	.	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	CDS	11152720	11152763	0.99	-	0	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	exon	11152720	11152763	.	-	.	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
Ledus.S5	AUGUSTUS	start_codon	11152761	11152763	.	-	0	transcript_id "Ledus.S5G114300.t1"; gene_id "Ledus.S5G114300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6965.t1 is derived from g6496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	417002	419878	.	-	.	Ledus.C7G002600
Ledus.C7	AUGUSTUS	transcript	417002	419878	.	-	.	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	stop_codon	416999	417001	.	-	0	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	CDS	417002	417143	0.41	-	1	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	exon	417002	417143	.	-	.	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	intron	417144	417231	.	-	.	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	CDS	417232	418895	0.81	-	0	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	exon	417232	418895	.	-	.	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	intron	418896	419058	.	-	.	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	CDS	419059	419208	1	-	0	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	exon	419059	419208	.	-	.	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	intron	419209	419328	.	-	.	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	CDS	419329	419374	1	-	1	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	exon	419329	419374	.	-	.	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	intron	419375	419500	.	-	.	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	CDS	419501	419598	1	-	0	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	exon	419501	419598	.	-	.	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	intron	419599	419746	.	-	.	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	CDS	419747	419878	0.73	-	0	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	exon	419747	419878	.	-	.	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
Ledus.C7	AUGUSTUS	start_codon	419876	419878	.	-	0	transcript_id "Ledus.C7G002600.t1"; gene_id "Ledus.C7G002600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6255.t1 is derived from g3698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29915067	29915749	.	-	.	Ledus.S1G367600
Ledus.S1	AUGUSTUS	transcript	29915067	29915749	.	-	.	transcript_id "Ledus.S1G367600.t1"; gene_id "Ledus.S1G367600"
Ledus.S1	AUGUSTUS	stop_codon	29915064	29915066	.	-	0	transcript_id "Ledus.S1G367600.t1"; gene_id "Ledus.S1G367600"
Ledus.S1	AUGUSTUS	CDS	29915067	29915622	0.55	-	1	transcript_id "Ledus.S1G367600.t1"; gene_id "Ledus.S1G367600"
Ledus.S1	AUGUSTUS	exon	29915067	29915622	.	-	.	transcript_id "Ledus.S1G367600.t1"; gene_id "Ledus.S1G367600"
Ledus.S1	AUGUSTUS	intron	29915623	29915708	.	-	.	transcript_id "Ledus.S1G367600.t1"; gene_id "Ledus.S1G367600"
Ledus.S1	AUGUSTUS	CDS	29915709	29915749	0.56	-	0	transcript_id "Ledus.S1G367600.t1"; gene_id "Ledus.S1G367600"
Ledus.S1	AUGUSTUS	exon	29915709	29915749	.	-	.	transcript_id "Ledus.S1G367600.t1"; gene_id "Ledus.S1G367600"
Ledus.S1	AUGUSTUS	start_codon	29915747	29915749	.	-	0	transcript_id "Ledus.S1G367600.t1"; gene_id "Ledus.S1G367600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8582.t1 is derived from g9612.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	382812	385154	.	+	.	Ledus.S3G005900
Ledus.S3	AUGUSTUS	transcript	382812	385154	.	+	.	transcript_id "Ledus.S3G005900.t1"; gene_id "Ledus.S3G005900"
Ledus.S3	AUGUSTUS	start_codon	382812	382814	.	+	0	transcript_id "Ledus.S3G005900.t1"; gene_id "Ledus.S3G005900"
Ledus.S3	AUGUSTUS	CDS	382812	385154	0.56	+	0	transcript_id "Ledus.S3G005900.t1"; gene_id "Ledus.S3G005900"
Ledus.S3	AUGUSTUS	exon	382812	385154	.	+	.	transcript_id "Ledus.S3G005900.t1"; gene_id "Ledus.S3G005900"
Ledus.S3	AUGUSTUS	stop_codon	385155	385157	.	+	0	transcript_id "Ledus.S3G005900.t1"; gene_id "Ledus.S3G005900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8338.t1 is derived from g13010.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10885545	10889841	.	-	.	Ledus.S5G111600
Ledus.S5	AUGUSTUS	transcript	10885545	10889841	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	stop_codon	10885542	10885544	.	-	0	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10885545	10886001	0.77	-	1	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10885545	10886001	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10886002	10886095	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10886096	10886225	1	-	2	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10886096	10886225	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10886226	10886350	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10886351	10886457	1	-	1	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10886351	10886457	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10886458	10886648	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10886649	10886734	1	-	0	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10886649	10886734	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10886735	10886828	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10886829	10886895	0.99	-	1	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10886829	10886895	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10886896	10887015	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10887016	10887305	0.83	-	0	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10887016	10887305	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10887306	10887423	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10887424	10887507	0.91	-	0	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10887424	10887507	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10887508	10887671	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10887672	10887722	1	-	0	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10887672	10887722	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10887723	10887807	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10887808	10887966	1	-	0	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10887808	10887966	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10887967	10888134	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10888135	10888219	1	-	1	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10888135	10888219	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10888220	10888402	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10888403	10888470	1	-	0	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10888403	10888470	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10888471	10888676	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10888677	10888721	1	-	0	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10888677	10888721	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10888722	10889376	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10889377	10889421	1	-	0	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10889377	10889421	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	intron	10889422	10889562	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	CDS	10889563	10889841	0.97	-	0	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	exon	10889563	10889841	.	-	.	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
Ledus.S5	AUGUSTUS	start_codon	10889839	10889841	.	-	0	transcript_id "Ledus.S5G111600.t1"; gene_id "Ledus.S5G111600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10879.t1 is derived from g4497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	290874	297209	.	-	.	Ledus.S4G003500
Ledus.S4	AUGUSTUS	transcript	290874	297209	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	stop_codon	290871	290873	.	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	290874	291074	0.85	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	290874	291074	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	291075	291186	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	291187	291279	0.86	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	291187	291279	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	291280	291358	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	291359	291452	1	-	1	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	291359	291452	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	291453	291545	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	291546	291631	1	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	291546	291631	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	291632	291723	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	291724	291939	1	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	291724	291939	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	291940	292044	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	292045	292266	0.99	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	292045	292266	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	292267	292344	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	292345	292445	1	-	2	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	292345	292445	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	292446	292548	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	292549	293569	0.57	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	292549	293569	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	293570	293636	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	293637	293823	0.33	-	1	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	293637	293823	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	293824	294020	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	294021	294092	0.93	-	1	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	294021	294092	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	294093	294176	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	294177	294232	1	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	294177	294232	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	294233	294323	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	294324	294384	1	-	1	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	294324	294384	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	294385	294496	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	294497	294570	1	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	294497	294570	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	294571	294644	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	294645	294800	0.98	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	294645	294800	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	294801	294908	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	294909	295025	0.9	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	294909	295025	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	295026	295120	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	295121	295201	1	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	295121	295201	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	295202	295349	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	295350	295418	1	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	295350	295418	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	295419	295573	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	295574	295645	1	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	295574	295645	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	295646	295772	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	295773	295930	1	-	2	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	295773	295930	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	295931	296107	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	296108	296237	1	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	296108	296237	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	296238	296358	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	296359	296482	1	-	1	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	296359	296482	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	296483	296606	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	296607	296983	0.98	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	296607	296983	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	intron	296984	297125	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	CDS	297126	297209	0.72	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	exon	297126	297209	.	-	.	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
Ledus.S4	AUGUSTUS	start_codon	297207	297209	.	-	0	transcript_id "Ledus.S4G003500.t1"; gene_id "Ledus.S4G003500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8367.t1 is derived from g13039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11160128	11162017	.	-	.	Ledus.S5G114500
Ledus.S5	AUGUSTUS	transcript	11160128	11162017	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	stop_codon	11160125	11160127	.	-	0	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	CDS	11160128	11160250	1	-	0	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	exon	11160128	11160250	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	intron	11160251	11160372	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	CDS	11160373	11160500	1	-	2	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	exon	11160373	11160500	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	intron	11160501	11160625	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	CDS	11160626	11160696	1	-	1	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	exon	11160626	11160696	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	intron	11160697	11160858	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	CDS	11160859	11160925	1	-	2	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	exon	11160859	11160925	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	intron	11160926	11161084	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	CDS	11161085	11161186	1	-	2	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	exon	11161085	11161186	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	intron	11161187	11161277	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	CDS	11161278	11161377	0.93	-	0	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	exon	11161278	11161377	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	intron	11161378	11161484	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	CDS	11161485	11161635	0.97	-	1	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	exon	11161485	11161635	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	intron	11161636	11161716	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	CDS	11161717	11161799	1	-	0	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	exon	11161717	11161799	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	intron	11161800	11161900	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	CDS	11161901	11162017	0.86	-	0	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	exon	11161901	11162017	.	-	.	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
Ledus.S5	AUGUSTUS	start_codon	11162015	11162017	.	-	0	transcript_id "Ledus.S5G114500.t1"; gene_id "Ledus.S5G114500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9393.t1 is derived from g10423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6518172	6519199	.	+	.	Ledus.S3G087000
Ledus.S3	AUGUSTUS	transcript	6518172	6519199	.	+	.	transcript_id "Ledus.S3G087000.t1"; gene_id "Ledus.S3G087000"
Ledus.S3	AUGUSTUS	start_codon	6518172	6518174	.	+	0	transcript_id "Ledus.S3G087000.t1"; gene_id "Ledus.S3G087000"
Ledus.S3	AUGUSTUS	CDS	6518172	6518342	1	+	0	transcript_id "Ledus.S3G087000.t1"; gene_id "Ledus.S3G087000"
Ledus.S3	AUGUSTUS	exon	6518172	6518342	.	+	.	transcript_id "Ledus.S3G087000.t1"; gene_id "Ledus.S3G087000"
Ledus.S3	AUGUSTUS	intron	6518343	6519073	.	+	.	transcript_id "Ledus.S3G087000.t1"; gene_id "Ledus.S3G087000"
Ledus.S3	AUGUSTUS	CDS	6519074	6519199	0.99	+	0	transcript_id "Ledus.S3G087000.t1"; gene_id "Ledus.S3G087000"
Ledus.S3	AUGUSTUS	exon	6519074	6519199	.	+	.	transcript_id "Ledus.S3G087000.t1"; gene_id "Ledus.S3G087000"
Ledus.S3	AUGUSTUS	stop_codon	6519200	6519202	.	+	0	transcript_id "Ledus.S3G087000.t1"; gene_id "Ledus.S3G087000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3439.t1 is derived from g874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8379906	8384851	.	-	.	Ledus.S1G086000
Ledus.S1	AUGUSTUS	transcript	8379906	8384851	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	stop_codon	8379903	8379905	.	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8379906	8379930	0.98	-	1	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8379906	8379930	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8379931	8380024	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8380025	8380054	1	-	1	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8380025	8380054	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8380055	8380154	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8380155	8380292	1	-	1	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8380155	8380292	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8380293	8380381	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8380382	8380491	1	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8380382	8380491	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8380492	8380585	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8380586	8380615	1	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8380586	8380615	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8380616	8380751	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8380752	8380817	1	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8380752	8380817	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8380818	8380959	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8380960	8381065	0.65	-	1	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8380960	8381065	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8381066	8381181	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8381182	8381267	0.42	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8381182	8381267	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8381268	8381386	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8381387	8381467	1	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8381387	8381467	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8381468	8381571	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8381572	8381607	1	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8381572	8381607	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8381608	8381756	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8381757	8381882	1	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8381757	8381882	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8381883	8381966	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8381967	8382004	1	-	2	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8381967	8382004	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8382005	8382947	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8382948	8383050	1	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8382948	8383050	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8383051	8383321	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8383322	8383396	1	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8383322	8383396	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8383397	8383546	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8383547	8383693	1	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8383547	8383693	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8383694	8383824	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8383825	8383959	1	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8383825	8383959	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8383960	8384075	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8384076	8384204	1	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8384076	8384204	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8384205	8384295	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8384296	8384397	1	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8384296	8384397	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	intron	8384398	8384638	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	CDS	8384639	8384851	0.95	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	exon	8384639	8384851	.	-	.	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
Ledus.S1	AUGUSTUS	start_codon	8384849	8384851	.	-	0	transcript_id "Ledus.S1G086000.t1"; gene_id "Ledus.S1G086000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7271.t1 is derived from g11942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	664480	667035	.	+	.	Ledus.S5G004900
Ledus.S5	AUGUSTUS	transcript	664480	667035	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	start_codon	664480	664482	.	+	0	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	CDS	664480	665118	0.99	+	0	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	exon	664480	665118	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	intron	665119	665381	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	CDS	665382	665510	1	+	0	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	exon	665382	665510	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	intron	665511	665666	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	CDS	665667	665978	1	+	0	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	exon	665667	665978	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	intron	665979	666156	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	CDS	666157	666204	1	+	0	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	exon	666157	666204	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	intron	666205	666309	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	CDS	666310	666486	0.38	+	0	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	exon	666310	666486	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	intron	666487	666639	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	CDS	666640	666696	0.53	+	0	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	exon	666640	666696	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	intron	666697	666930	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	CDS	666931	667035	0.6	+	0	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	exon	666931	667035	.	+	.	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
Ledus.S5	AUGUSTUS	stop_codon	667036	667038	.	+	0	transcript_id "Ledus.S5G004900.t1"; gene_id "Ledus.S5G004900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6457.t1 is derived from g3900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31353513	31355381	.	-	.	Ledus.S1G387800
Ledus.S1	AUGUSTUS	transcript	31353513	31355381	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	stop_codon	31353510	31353512	.	-	0	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	CDS	31353513	31353605	0.95	-	0	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	exon	31353513	31353605	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	intron	31353606	31353685	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	CDS	31353686	31353802	1	-	0	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	exon	31353686	31353802	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	intron	31353803	31353998	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	CDS	31353999	31354124	1	-	0	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	exon	31353999	31354124	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	intron	31354125	31354210	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	CDS	31354211	31354383	1	-	2	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	exon	31354211	31354383	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	intron	31354384	31354469	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	CDS	31354470	31354604	1	-	2	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	exon	31354470	31354604	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	intron	31354605	31354689	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	CDS	31354690	31355066	0.67	-	1	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	exon	31354690	31355066	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	intron	31355067	31355182	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	CDS	31355183	31355222	0.3	-	2	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	exon	31355183	31355222	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	intron	31355223	31355299	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	CDS	31355300	31355381	0.78	-	0	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	exon	31355300	31355381	.	-	.	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
Ledus.S1	AUGUSTUS	start_codon	31355379	31355381	.	-	0	transcript_id "Ledus.S1G387800.t1"; gene_id "Ledus.S1G387800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1739.t1 is derived from g8601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12253838	12254431	.	-	.	Ledus.S2G162100
Ledus.S2	AUGUSTUS	transcript	12253838	12254431	.	-	.	transcript_id "Ledus.S2G162100.t1"; gene_id "Ledus.S2G162100"
Ledus.S2	AUGUSTUS	stop_codon	12253835	12253837	.	-	0	transcript_id "Ledus.S2G162100.t1"; gene_id "Ledus.S2G162100"
Ledus.S2	AUGUSTUS	CDS	12253838	12253864	1	-	0	transcript_id "Ledus.S2G162100.t1"; gene_id "Ledus.S2G162100"
Ledus.S2	AUGUSTUS	exon	12253838	12253864	.	-	.	transcript_id "Ledus.S2G162100.t1"; gene_id "Ledus.S2G162100"
Ledus.S2	AUGUSTUS	intron	12253865	12253949	.	-	.	transcript_id "Ledus.S2G162100.t1"; gene_id "Ledus.S2G162100"
Ledus.S2	AUGUSTUS	CDS	12253950	12254190	1	-	1	transcript_id "Ledus.S2G162100.t1"; gene_id "Ledus.S2G162100"
Ledus.S2	AUGUSTUS	exon	12253950	12254190	.	-	.	transcript_id "Ledus.S2G162100.t1"; gene_id "Ledus.S2G162100"
Ledus.S2	AUGUSTUS	intron	12254191	12254282	.	-	.	transcript_id "Ledus.S2G162100.t1"; gene_id "Ledus.S2G162100"
Ledus.S2	AUGUSTUS	CDS	12254283	12254431	0.97	-	0	transcript_id "Ledus.S2G162100.t1"; gene_id "Ledus.S2G162100"
Ledus.S2	AUGUSTUS	exon	12254283	12254431	.	-	.	transcript_id "Ledus.S2G162100.t1"; gene_id "Ledus.S2G162100"
Ledus.S2	AUGUSTUS	start_codon	12254429	12254431	.	-	0	transcript_id "Ledus.S2G162100.t1"; gene_id "Ledus.S2G162100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1176.t1 is derived from g8037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8224150	8225182	.	+	.	Ledus.S2G105800
Ledus.S2	AUGUSTUS	transcript	8224150	8225182	.	+	.	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	start_codon	8224150	8224152	.	+	0	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	CDS	8224150	8224200	0.98	+	0	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	exon	8224150	8224200	.	+	.	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	intron	8224201	8224359	.	+	.	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	CDS	8224360	8224396	0.95	+	0	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	exon	8224360	8224396	.	+	.	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	intron	8224397	8224637	.	+	.	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	CDS	8224638	8224885	0.15	+	2	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	exon	8224638	8224885	.	+	.	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	intron	8224886	8225059	.	+	.	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	CDS	8225060	8225182	0.36	+	0	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	exon	8225060	8225182	.	+	.	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
Ledus.S2	AUGUSTUS	stop_codon	8225183	8225185	.	+	0	transcript_id "Ledus.S2G105800.t1"; gene_id "Ledus.S2G105800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3491.t1 is derived from g926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8709744	8713255	.	-	.	Ledus.S1G091200
Ledus.S1	AUGUSTUS	transcript	8709744	8713255	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	stop_codon	8709741	8709743	.	-	0	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	CDS	8709744	8709927	0.99	-	1	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	exon	8709744	8709927	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	intron	8709928	8710229	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	CDS	8710230	8710288	1	-	0	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	exon	8710230	8710288	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	intron	8710289	8710544	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	CDS	8710545	8710820	1	-	0	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	exon	8710545	8710820	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	intron	8710821	8710941	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	CDS	8710942	8711186	1	-	2	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	exon	8710942	8711186	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	intron	8711187	8711283	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	CDS	8711284	8711467	1	-	0	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	exon	8711284	8711467	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	intron	8711468	8711548	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	CDS	8711549	8711900	0.99	-	1	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	exon	8711549	8711900	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	intron	8711901	8712052	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	CDS	8712053	8712161	1	-	2	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	exon	8712053	8712161	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	intron	8712162	8712259	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	CDS	8712260	8712314	1	-	0	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	exon	8712260	8712314	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	intron	8712315	8712549	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	CDS	8712550	8712640	1	-	1	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	exon	8712550	8712640	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	intron	8712641	8712804	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	CDS	8712805	8712863	1	-	0	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	exon	8712805	8712863	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	intron	8712864	8713201	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	CDS	8713202	8713255	1	-	0	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	exon	8713202	8713255	.	-	.	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
Ledus.S1	AUGUSTUS	start_codon	8713253	8713255	.	-	0	transcript_id "Ledus.S1G091200.t1"; gene_id "Ledus.S1G091200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1073.t1 is derived from g7934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7257311	7259657	.	+	.	Ledus.S2G095500
Ledus.S2	AUGUSTUS	transcript	7257311	7259657	.	+	.	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	start_codon	7257311	7257313	.	+	0	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	CDS	7257311	7257347	0.98	+	0	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	exon	7257311	7257347	.	+	.	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	intron	7257348	7257468	.	+	.	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	CDS	7257469	7257614	1	+	2	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	exon	7257469	7257614	.	+	.	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	intron	7257615	7257713	.	+	.	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	CDS	7257714	7257781	1	+	0	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	exon	7257714	7257781	.	+	.	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	intron	7257782	7257901	.	+	.	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	CDS	7257902	7259657	0.95	+	1	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	exon	7257902	7259657	.	+	.	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
Ledus.S2	AUGUSTUS	stop_codon	7259658	7259660	.	+	0	transcript_id "Ledus.S2G095500.t1"; gene_id "Ledus.S2G095500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6184.t1 is derived from g3627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29448354	29449433	.	-	.	Ledus.S1G360500
Ledus.S1	AUGUSTUS	transcript	29448354	29449433	.	-	.	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	stop_codon	29448351	29448353	.	-	0	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	CDS	29448354	29448368	0.46	-	0	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	exon	29448354	29448368	.	-	.	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	intron	29448369	29448472	.	-	.	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	CDS	29448473	29448603	0.61	-	2	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	exon	29448473	29448603	.	-	.	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	intron	29448604	29448796	.	-	.	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	CDS	29448797	29448826	0.94	-	2	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	exon	29448797	29448826	.	-	.	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	intron	29448827	29449037	.	-	.	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	CDS	29449038	29449124	0.67	-	2	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	exon	29449038	29449124	.	-	.	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	intron	29449125	29449248	.	-	.	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	CDS	29449249	29449257	0.76	-	2	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	exon	29449249	29449257	.	-	.	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	intron	29449258	29449408	.	-	.	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	CDS	29449409	29449433	0.71	-	0	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	exon	29449409	29449433	.	-	.	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
Ledus.S1	AUGUSTUS	start_codon	29449431	29449433	.	-	0	transcript_id "Ledus.S1G360500.t1"; gene_id "Ledus.S1G360500"
# This transcript jg2421.t2 is derived from g9284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2422.t1 is derived from g9285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18053301	18054095	.	-	.	Ledus.S2G230400
Ledus.S2	AUGUSTUS	transcript	18053301	18054095	.	-	.	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	stop_codon	18053298	18053300	.	-	0	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	CDS	18053301	18053402	0.94	-	0	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	exon	18053301	18053402	.	-	.	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	intron	18053403	18053503	.	-	.	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	CDS	18053504	18053581	1	-	0	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	exon	18053504	18053581	.	-	.	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	intron	18053582	18053715	.	-	.	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	CDS	18053716	18053819	1	-	2	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	exon	18053716	18053819	.	-	.	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	intron	18053820	18053908	.	-	.	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	CDS	18053909	18054095	1	-	0	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	exon	18053909	18054095	.	-	.	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
Ledus.S2	AUGUSTUS	start_codon	18054093	18054095	.	-	0	transcript_id "Ledus.S2G230400.t1"; gene_id "Ledus.S2G230400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4886.t1 is derived from g2324.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20525339	20531059	.	-	.	Ledus.S1G230700
Ledus.S1	AUGUSTUS	transcript	20525339	20531059	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	stop_codon	20525336	20525338	.	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20525339	20525419	0.31	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20525339	20525419	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20525420	20525568	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20525569	20525651	0.48	-	2	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20525569	20525651	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20525652	20525770	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20525771	20525900	0.89	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20525771	20525900	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20525901	20525996	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20525997	20526086	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20525997	20526086	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20526087	20526186	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20526187	20526292	1	-	1	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20526187	20526292	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20526293	20526380	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20526381	20526481	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20526381	20526481	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20526482	20526581	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20526582	20526677	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20526582	20526677	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20526678	20526798	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20526799	20526895	0.99	-	1	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20526799	20526895	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20526896	20526982	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20526983	20527119	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20526983	20527119	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20527120	20527237	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20527238	20527369	0.97	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20527238	20527369	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20527370	20527524	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20527525	20527623	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20527525	20527623	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20527624	20527879	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20527880	20528077	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20527880	20528077	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20528078	20528161	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20528162	20528248	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20528162	20528248	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20528249	20528389	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20528390	20528480	1	-	1	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20528390	20528480	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20528481	20528906	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20528907	20528962	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20528907	20528962	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20528963	20529113	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20529114	20529266	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20529114	20529266	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20529267	20529396	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20529397	20529489	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20529397	20529489	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20529490	20529626	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20529627	20529725	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20529627	20529725	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20529726	20529860	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20529861	20529922	1	-	2	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20529861	20529922	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20529923	20530032	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20530033	20530128	0.87	-	2	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20530033	20530128	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20530129	20530253	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20530254	20530353	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20530254	20530353	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20530354	20530513	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20530514	20530585	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20530514	20530585	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20530586	20530719	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20530720	20530770	1	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20530720	20530770	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	intron	20530771	20530903	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	CDS	20530904	20531059	0.71	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	exon	20530904	20531059	.	-	.	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
Ledus.S1	AUGUSTUS	start_codon	20531057	20531059	.	-	0	transcript_id "Ledus.S1G230700.t1"; gene_id "Ledus.S1G230700"
# This transcript jg6777.t2 is derived from g4221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6778.t1 is derived from g4222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34087999	34089420	.	+	.	Ledus.S1G419900
Ledus.S1	AUGUSTUS	transcript	34087999	34089420	.	+	.	transcript_id "Ledus.S1G419900.t1"; gene_id "Ledus.S1G419900"
Ledus.S1	AUGUSTUS	start_codon	34087999	34088001	.	+	0	transcript_id "Ledus.S1G419900.t1"; gene_id "Ledus.S1G419900"
Ledus.S1	AUGUSTUS	CDS	34087999	34088423	0.61	+	0	transcript_id "Ledus.S1G419900.t1"; gene_id "Ledus.S1G419900"
Ledus.S1	AUGUSTUS	exon	34087999	34088423	.	+	.	transcript_id "Ledus.S1G419900.t1"; gene_id "Ledus.S1G419900"
Ledus.S1	AUGUSTUS	intron	34088424	34088531	.	+	.	transcript_id "Ledus.S1G419900.t1"; gene_id "Ledus.S1G419900"
Ledus.S1	AUGUSTUS	CDS	34088532	34089420	1	+	1	transcript_id "Ledus.S1G419900.t1"; gene_id "Ledus.S1G419900"
Ledus.S1	AUGUSTUS	exon	34088532	34089420	.	+	.	transcript_id "Ledus.S1G419900.t1"; gene_id "Ledus.S1G419900"
Ledus.S1	AUGUSTUS	stop_codon	34089421	34089423	.	+	0	transcript_id "Ledus.S1G419900.t1"; gene_id "Ledus.S1G419900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2743.t1 is derived from g177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2847741	2848780	.	-	.	Ledus.S1G016400
Ledus.S1	AUGUSTUS	transcript	2847741	2848780	.	-	.	transcript_id "Ledus.S1G016400.t1"; gene_id "Ledus.S1G016400"
Ledus.S1	AUGUSTUS	stop_codon	2847738	2847740	.	-	0	transcript_id "Ledus.S1G016400.t1"; gene_id "Ledus.S1G016400"
Ledus.S1	AUGUSTUS	CDS	2847741	2848542	1	-	1	transcript_id "Ledus.S1G016400.t1"; gene_id "Ledus.S1G016400"
Ledus.S1	AUGUSTUS	exon	2847741	2848542	.	-	.	transcript_id "Ledus.S1G016400.t1"; gene_id "Ledus.S1G016400"
Ledus.S1	AUGUSTUS	intron	2848543	2848709	.	-	.	transcript_id "Ledus.S1G016400.t1"; gene_id "Ledus.S1G016400"
Ledus.S1	AUGUSTUS	CDS	2848710	2848780	0.5	-	0	transcript_id "Ledus.S1G016400.t1"; gene_id "Ledus.S1G016400"
Ledus.S1	AUGUSTUS	exon	2848710	2848780	.	-	.	transcript_id "Ledus.S1G016400.t1"; gene_id "Ledus.S1G016400"
Ledus.S1	AUGUSTUS	start_codon	2848778	2848780	.	-	0	transcript_id "Ledus.S1G016400.t1"; gene_id "Ledus.S1G016400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9452.t1 is derived from g10482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7057152	7058881	.	-	.	Ledus.S3G092900
Ledus.S3	AUGUSTUS	transcript	7057152	7058881	.	-	.	transcript_id "Ledus.S3G092900.t1"; gene_id "Ledus.S3G092900"
Ledus.S3	AUGUSTUS	stop_codon	7057149	7057151	.	-	0	transcript_id "Ledus.S3G092900.t1"; gene_id "Ledus.S3G092900"
Ledus.S3	AUGUSTUS	CDS	7057152	7058179	0.95	-	2	transcript_id "Ledus.S3G092900.t1"; gene_id "Ledus.S3G092900"
Ledus.S3	AUGUSTUS	exon	7057152	7058179	.	-	.	transcript_id "Ledus.S3G092900.t1"; gene_id "Ledus.S3G092900"
Ledus.S3	AUGUSTUS	intron	7058180	7058247	.	-	.	transcript_id "Ledus.S3G092900.t1"; gene_id "Ledus.S3G092900"
Ledus.S3	AUGUSTUS	CDS	7058248	7058881	0.9	-	0	transcript_id "Ledus.S3G092900.t1"; gene_id "Ledus.S3G092900"
Ledus.S3	AUGUSTUS	exon	7058248	7058881	.	-	.	transcript_id "Ledus.S3G092900.t1"; gene_id "Ledus.S3G092900"
Ledus.S3	AUGUSTUS	start_codon	7058879	7058881	.	-	0	transcript_id "Ledus.S3G092900.t1"; gene_id "Ledus.S3G092900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12821.t1 is derived from g6443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15057546	15060625	.	-	.	Ledus.S4G197700
Ledus.S4	AUGUSTUS	transcript	15057546	15060625	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	stop_codon	15057543	15057545	.	-	0	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	CDS	15057546	15057655	0.99	-	2	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	exon	15057546	15057655	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	intron	15057656	15057761	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	CDS	15057762	15057861	0.99	-	0	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	exon	15057762	15057861	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	intron	15057862	15057963	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	CDS	15057964	15058080	0.9	-	0	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	exon	15057964	15058080	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	intron	15058081	15058457	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	CDS	15058458	15058535	1	-	0	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	exon	15058458	15058535	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	intron	15058536	15058677	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	CDS	15058678	15058790	1	-	2	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	exon	15058678	15058790	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	intron	15058791	15058918	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	CDS	15058919	15059014	1	-	2	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	exon	15058919	15059014	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	intron	15059015	15059109	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	CDS	15059110	15059230	1	-	0	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	exon	15059110	15059230	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	intron	15059231	15059368	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	CDS	15059369	15059447	1	-	1	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	exon	15059369	15059447	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	intron	15059448	15059615	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	CDS	15059616	15059681	1	-	1	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	exon	15059616	15059681	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	intron	15059682	15060076	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	CDS	15060077	15060148	1	-	1	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	exon	15060077	15060148	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	intron	15060149	15060302	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	CDS	15060303	15060625	0.93	-	0	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	exon	15060303	15060625	.	-	.	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
Ledus.S4	AUGUSTUS	start_codon	15060623	15060625	.	-	0	transcript_id "Ledus.S4G197700.t1"; gene_id "Ledus.S4G197700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2601.t1 is derived from g34.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	301974	304343	.	+	.	Ledus.S1G002200
Ledus.S1	AUGUSTUS	transcript	301974	304343	.	+	.	transcript_id "Ledus.S1G002200.t1"; gene_id "Ledus.S1G002200"
Ledus.S1	AUGUSTUS	start_codon	301974	301976	.	+	0	transcript_id "Ledus.S1G002200.t1"; gene_id "Ledus.S1G002200"
Ledus.S1	AUGUSTUS	CDS	301974	302286	0.6	+	0	transcript_id "Ledus.S1G002200.t1"; gene_id "Ledus.S1G002200"
Ledus.S1	AUGUSTUS	exon	301974	302286	.	+	.	transcript_id "Ledus.S1G002200.t1"; gene_id "Ledus.S1G002200"
Ledus.S1	AUGUSTUS	intron	302287	302385	.	+	.	transcript_id "Ledus.S1G002200.t1"; gene_id "Ledus.S1G002200"
Ledus.S1	AUGUSTUS	CDS	302386	304343	1	+	2	transcript_id "Ledus.S1G002200.t1"; gene_id "Ledus.S1G002200"
Ledus.S1	AUGUSTUS	exon	302386	304343	.	+	.	transcript_id "Ledus.S1G002200.t1"; gene_id "Ledus.S1G002200"
Ledus.S1	AUGUSTUS	stop_codon	304344	304346	.	+	0	transcript_id "Ledus.S1G002200.t1"; gene_id "Ledus.S1G002200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg97.t1 is derived from g9510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	401129	405887	.	+	.	Ledus.C8G005700
Ledus.C8	AUGUSTUS	transcript	401129	405887	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	start_codon	401129	401131	.	+	0	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	401129	401539	0.82	+	0	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	401129	401539	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	401540	401607	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	401608	401757	0.9	+	0	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	401608	401757	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	401758	401861	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	401862	402132	0.86	+	0	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	401862	402132	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	402133	402229	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	402230	402340	0.99	+	2	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	402230	402340	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	402341	402446	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	402447	402600	1	+	2	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	402447	402600	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	402601	402696	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	402697	402954	1	+	1	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	402697	402954	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	402955	403051	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	403052	403174	1	+	1	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	403052	403174	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	403175	403247	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	403248	403325	1	+	1	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	403248	403325	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	403326	403403	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	403404	403593	0.54	+	1	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	403404	403593	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	403594	403699	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	403700	403814	0.79	+	0	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	403700	403814	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	403815	403917	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	403918	403988	0.82	+	2	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	403918	403988	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	403989	404297	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	404298	404368	1	+	0	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	404298	404368	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	404369	404486	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	404487	404593	1	+	1	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	404487	404593	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	404594	404706	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	404707	405137	1	+	2	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	404707	405137	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	intron	405138	405254	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	CDS	405255	405887	1	+	0	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	exon	405255	405887	.	+	.	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
Ledus.C8	AUGUSTUS	stop_codon	405888	405890	.	+	0	transcript_id "Ledus.C8G005700.t1"; gene_id "Ledus.C8G005700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7170.t1 is derived from g6701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1943935	1944588	.	+	.	Ledus.C7G023100
Ledus.C7	AUGUSTUS	transcript	1943935	1944588	.	+	.	transcript_id "Ledus.C7G023100.t1"; gene_id "Ledus.C7G023100"
Ledus.C7	AUGUSTUS	start_codon	1943935	1943937	.	+	0	transcript_id "Ledus.C7G023100.t1"; gene_id "Ledus.C7G023100"
Ledus.C7	AUGUSTUS	CDS	1943935	1944588	0.99	+	0	transcript_id "Ledus.C7G023100.t1"; gene_id "Ledus.C7G023100"
Ledus.C7	AUGUSTUS	exon	1943935	1944588	.	+	.	transcript_id "Ledus.C7G023100.t1"; gene_id "Ledus.C7G023100"
Ledus.C7	AUGUSTUS	stop_codon	1944589	1944591	.	+	0	transcript_id "Ledus.C7G023100.t1"; gene_id "Ledus.C7G023100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2555.t1 is derived from g9418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18946713	18947096	.	+	.	Ledus.S2G243700
Ledus.S2	AUGUSTUS	transcript	18946713	18947096	.	+	.	transcript_id "Ledus.S2G243700.t1"; gene_id "Ledus.S2G243700"
Ledus.S2	AUGUSTUS	start_codon	18946713	18946715	.	+	0	transcript_id "Ledus.S2G243700.t1"; gene_id "Ledus.S2G243700"
Ledus.S2	AUGUSTUS	CDS	18946713	18947096	0.9	+	0	transcript_id "Ledus.S2G243700.t1"; gene_id "Ledus.S2G243700"
Ledus.S2	AUGUSTUS	exon	18946713	18947096	.	+	.	transcript_id "Ledus.S2G243700.t1"; gene_id "Ledus.S2G243700"
Ledus.S2	AUGUSTUS	stop_codon	18947097	18947099	.	+	0	transcript_id "Ledus.S2G243700.t1"; gene_id "Ledus.S2G243700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1532.t1 is derived from g8393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10819786	10820772	.	+	.	Ledus.S2G141400
Ledus.S2	AUGUSTUS	transcript	10819786	10820772	.	+	.	transcript_id "Ledus.S2G141400.t1"; gene_id "Ledus.S2G141400"
Ledus.S2	AUGUSTUS	start_codon	10819786	10819788	.	+	0	transcript_id "Ledus.S2G141400.t1"; gene_id "Ledus.S2G141400"
Ledus.S2	AUGUSTUS	CDS	10819786	10820772	0.56	+	0	transcript_id "Ledus.S2G141400.t1"; gene_id "Ledus.S2G141400"
Ledus.S2	AUGUSTUS	exon	10819786	10820772	.	+	.	transcript_id "Ledus.S2G141400.t1"; gene_id "Ledus.S2G141400"
Ledus.S2	AUGUSTUS	stop_codon	10820773	10820775	.	+	0	transcript_id "Ledus.S2G141400.t1"; gene_id "Ledus.S2G141400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3010.t1 is derived from g445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5312709	5314163	.	-	.	Ledus.S1G043100
Ledus.S1	AUGUSTUS	transcript	5312709	5314163	.	-	.	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	stop_codon	5312706	5312708	.	-	0	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	CDS	5312709	5312892	0.97	-	1	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	exon	5312709	5312892	.	-	.	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	intron	5312893	5312982	.	-	.	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	CDS	5312983	5313159	1	-	1	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	exon	5312983	5313159	.	-	.	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	intron	5313160	5313238	.	-	.	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	CDS	5313239	5313426	1	-	0	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	exon	5313239	5313426	.	-	.	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	intron	5313427	5313517	.	-	.	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	CDS	5313518	5313595	1	-	0	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	exon	5313518	5313595	.	-	.	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	intron	5313596	5313742	.	-	.	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	CDS	5313743	5313847	1	-	0	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	exon	5313743	5313847	.	-	.	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	intron	5313848	5313917	.	-	.	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	CDS	5313918	5314163	0.75	-	0	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	exon	5313918	5314163	.	-	.	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
Ledus.S1	AUGUSTUS	start_codon	5314161	5314163	.	-	0	transcript_id "Ledus.S1G043100.t1"; gene_id "Ledus.S1G043100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11126.t1 is derived from g4744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2082250	2082617	.	-	.	Ledus.S4G028200
Ledus.S4	AUGUSTUS	transcript	2082250	2082617	.	-	.	transcript_id "Ledus.S4G028200.t1"; gene_id "Ledus.S4G028200"
Ledus.S4	AUGUSTUS	stop_codon	2082247	2082249	.	-	0	transcript_id "Ledus.S4G028200.t1"; gene_id "Ledus.S4G028200"
Ledus.S4	AUGUSTUS	CDS	2082250	2082352	0.46	-	1	transcript_id "Ledus.S4G028200.t1"; gene_id "Ledus.S4G028200"
Ledus.S4	AUGUSTUS	exon	2082250	2082352	.	-	.	transcript_id "Ledus.S4G028200.t1"; gene_id "Ledus.S4G028200"
Ledus.S4	AUGUSTUS	intron	2082353	2082438	.	-	.	transcript_id "Ledus.S4G028200.t1"; gene_id "Ledus.S4G028200"
Ledus.S4	AUGUSTUS	CDS	2082439	2082617	0.73	-	0	transcript_id "Ledus.S4G028200.t1"; gene_id "Ledus.S4G028200"
Ledus.S4	AUGUSTUS	exon	2082439	2082617	.	-	.	transcript_id "Ledus.S4G028200.t1"; gene_id "Ledus.S4G028200"
Ledus.S4	AUGUSTUS	start_codon	2082615	2082617	.	-	0	transcript_id "Ledus.S4G028200.t1"; gene_id "Ledus.S4G028200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10865.t1 is derived from g4483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	159498	161595	.	+	.	Ledus.S4G002100
Ledus.S4	AUGUSTUS	transcript	159498	161595	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	start_codon	159498	159500	.	+	0	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	CDS	159498	159701	0.96	+	0	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	exon	159498	159701	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	intron	159702	159777	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	CDS	159778	159987	1	+	0	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	exon	159778	159987	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	intron	159988	160100	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	CDS	160101	160178	0.99	+	0	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	exon	160101	160178	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	intron	160179	160306	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	CDS	160307	160531	1	+	0	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	exon	160307	160531	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	intron	160532	160662	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	CDS	160663	160761	1	+	0	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	exon	160663	160761	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	intron	160762	160845	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	CDS	160846	160904	1	+	0	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	exon	160846	160904	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	intron	160905	161095	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	CDS	161096	161246	1	+	1	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	exon	161096	161246	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	intron	161247	161334	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	CDS	161335	161440	0.93	+	0	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	exon	161335	161440	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	intron	161441	161524	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	CDS	161525	161595	0.8	+	2	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	exon	161525	161595	.	+	.	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
Ledus.S4	AUGUSTUS	stop_codon	161596	161598	.	+	0	transcript_id "Ledus.S4G002100.t1"; gene_id "Ledus.S4G002100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10678.t1 is derived from g11708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17051912	17052554	.	-	.	Ledus.S3G215500
Ledus.S3	AUGUSTUS	transcript	17051912	17052554	.	-	.	transcript_id "Ledus.S3G215500.t1"; gene_id "Ledus.S3G215500"
Ledus.S3	AUGUSTUS	stop_codon	17051909	17051911	.	-	0	transcript_id "Ledus.S3G215500.t1"; gene_id "Ledus.S3G215500"
Ledus.S3	AUGUSTUS	CDS	17051912	17051920	0.53	-	0	transcript_id "Ledus.S3G215500.t1"; gene_id "Ledus.S3G215500"
Ledus.S3	AUGUSTUS	exon	17051912	17051920	.	-	.	transcript_id "Ledus.S3G215500.t1"; gene_id "Ledus.S3G215500"
Ledus.S3	AUGUSTUS	intron	17051921	17052059	.	-	.	transcript_id "Ledus.S3G215500.t1"; gene_id "Ledus.S3G215500"
Ledus.S3	AUGUSTUS	CDS	17052060	17052554	0.44	-	0	transcript_id "Ledus.S3G215500.t1"; gene_id "Ledus.S3G215500"
Ledus.S3	AUGUSTUS	exon	17052060	17052554	.	-	.	transcript_id "Ledus.S3G215500.t1"; gene_id "Ledus.S3G215500"
Ledus.S3	AUGUSTUS	start_codon	17052552	17052554	.	-	0	transcript_id "Ledus.S3G215500.t1"; gene_id "Ledus.S3G215500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6938.t1 is derived from g4382.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35664209	35666889	.	+	.	Ledus.S1G435900
Ledus.S1	AUGUSTUS	transcript	35664209	35666889	.	+	.	transcript_id "Ledus.S1G435900.t1"; gene_id "Ledus.S1G435900"
Ledus.S1	AUGUSTUS	start_codon	35664209	35664211	.	+	0	transcript_id "Ledus.S1G435900.t1"; gene_id "Ledus.S1G435900"
Ledus.S1	AUGUSTUS	CDS	35664209	35664263	1	+	0	transcript_id "Ledus.S1G435900.t1"; gene_id "Ledus.S1G435900"
Ledus.S1	AUGUSTUS	exon	35664209	35664263	.	+	.	transcript_id "Ledus.S1G435900.t1"; gene_id "Ledus.S1G435900"
Ledus.S1	AUGUSTUS	intron	35664264	35664351	.	+	.	transcript_id "Ledus.S1G435900.t1"; gene_id "Ledus.S1G435900"
Ledus.S1	AUGUSTUS	CDS	35664352	35664362	1	+	2	transcript_id "Ledus.S1G435900.t1"; gene_id "Ledus.S1G435900"
Ledus.S1	AUGUSTUS	exon	35664352	35664362	.	+	.	transcript_id "Ledus.S1G435900.t1"; gene_id "Ledus.S1G435900"
Ledus.S1	AUGUSTUS	intron	35664363	35664537	.	+	.	transcript_id "Ledus.S1G435900.t1"; gene_id "Ledus.S1G435900"
Ledus.S1	AUGUSTUS	CDS	35664538	35666889	1	+	0	transcript_id "Ledus.S1G435900.t1"; gene_id "Ledus.S1G435900"
Ledus.S1	AUGUSTUS	exon	35664538	35666889	.	+	.	transcript_id "Ledus.S1G435900.t1"; gene_id "Ledus.S1G435900"
Ledus.S1	AUGUSTUS	stop_codon	35666890	35666892	.	+	0	transcript_id "Ledus.S1G435900.t1"; gene_id "Ledus.S1G435900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2393.t1 is derived from g9256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17860026	17861748	.	+	.	Ledus.S2G227500
Ledus.S2	AUGUSTUS	transcript	17860026	17861748	.	+	.	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	start_codon	17860026	17860028	.	+	0	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	CDS	17860026	17860046	1	+	0	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	exon	17860026	17860046	.	+	.	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	intron	17860047	17860195	.	+	.	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	CDS	17860196	17860301	1	+	0	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	exon	17860196	17860301	.	+	.	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	intron	17860302	17860454	.	+	.	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	CDS	17860455	17860556	1	+	2	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	exon	17860455	17860556	.	+	.	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	intron	17860557	17860652	.	+	.	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	CDS	17860653	17860738	0.36	+	2	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	exon	17860653	17860738	.	+	.	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	intron	17860739	17860824	.	+	.	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	CDS	17860825	17860903	0.4	+	0	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	exon	17860825	17860903	.	+	.	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	intron	17860904	17861284	.	+	.	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	CDS	17861285	17861748	0.9	+	2	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	exon	17861285	17861748	.	+	.	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
Ledus.S2	AUGUSTUS	stop_codon	17861749	17861751	.	+	0	transcript_id "Ledus.S2G227500.t1"; gene_id "Ledus.S2G227500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12451.t1 is derived from g6072.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12077614	12079812	.	-	.	Ledus.S4G160700
Ledus.S4	AUGUSTUS	transcript	12078225	12079812	.	-	.	transcript_id "Ledus.S4G160700.t1"; gene_id "Ledus.S4G160700"
Ledus.S4	AUGUSTUS	stop_codon	12078222	12078224	.	-	0	transcript_id "Ledus.S4G160700.t1"; gene_id "Ledus.S4G160700"
Ledus.S4	AUGUSTUS	CDS	12078225	12078247	0.97	-	2	transcript_id "Ledus.S4G160700.t1"; gene_id "Ledus.S4G160700"
Ledus.S4	AUGUSTUS	exon	12078225	12078247	.	-	.	transcript_id "Ledus.S4G160700.t1"; gene_id "Ledus.S4G160700"
Ledus.S4	AUGUSTUS	intron	12078248	12078311	.	-	.	transcript_id "Ledus.S4G160700.t1"; gene_id "Ledus.S4G160700"
Ledus.S4	AUGUSTUS	CDS	12078312	12079812	0.96	-	0	transcript_id "Ledus.S4G160700.t1"; gene_id "Ledus.S4G160700"
Ledus.S4	AUGUSTUS	exon	12078312	12079812	.	-	.	transcript_id "Ledus.S4G160700.t1"; gene_id "Ledus.S4G160700"
Ledus.S4	AUGUSTUS	start_codon	12079810	12079812	.	-	0	transcript_id "Ledus.S4G160700.t1"; gene_id "Ledus.S4G160700"
Ledus.S4	AUGUSTUS	transcript	12077614	12079812	.	-	.	transcript_id "Ledus.S4G160700.t2"; gene_id "Ledus.S4G160700"
Ledus.S4	AUGUSTUS	stop_codon	12077611	12077613	.	-	0	transcript_id "Ledus.S4G160700.t2"; gene_id "Ledus.S4G160700"
Ledus.S4	AUGUSTUS	CDS	12077614	12079812	0.99	-	0	transcript_id "Ledus.S4G160700.t2"; gene_id "Ledus.S4G160700"
Ledus.S4	AUGUSTUS	exon	12077614	12079812	.	-	.	transcript_id "Ledus.S4G160700.t2"; gene_id "Ledus.S4G160700"
Ledus.S4	AUGUSTUS	start_codon	12079810	12079812	.	-	0	transcript_id "Ledus.S4G160700.t2"; gene_id "Ledus.S4G160700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1303.t1 is derived from g8164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9190092	9192501	.	-	.	Ledus.S2G118500
Ledus.S2	AUGUSTUS	transcript	9190092	9192501	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	stop_codon	9190089	9190091	.	-	0	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	CDS	9190092	9190154	1	-	0	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	exon	9190092	9190154	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	intron	9190155	9190237	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	CDS	9190238	9190288	1	-	0	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	exon	9190238	9190288	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	intron	9190289	9190367	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	CDS	9190368	9190514	1	-	0	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	exon	9190368	9190514	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	intron	9190515	9190648	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	CDS	9190649	9190966	1	-	0	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	exon	9190649	9190966	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	intron	9190967	9191059	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	CDS	9191060	9191214	1	-	2	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	exon	9191060	9191214	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	intron	9191215	9191383	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	CDS	9191384	9191691	1	-	1	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	exon	9191384	9191691	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	intron	9191692	9191851	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	CDS	9191852	9192152	0.93	-	2	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	exon	9191852	9192152	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	intron	9192153	9192247	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	CDS	9192248	9192320	0.99	-	0	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	exon	9192248	9192320	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	intron	9192321	9192411	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	CDS	9192412	9192501	0.79	-	0	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	exon	9192412	9192501	.	-	.	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
Ledus.S2	AUGUSTUS	start_codon	9192499	9192501	.	-	0	transcript_id "Ledus.S2G118500.t1"; gene_id "Ledus.S2G118500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5228.t1 is derived from g2667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22595026	22598464	.	+	.	Ledus.S1G264900
Ledus.S1	AUGUSTUS	transcript	22595026	22598464	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	start_codon	22595026	22595028	.	+	0	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	CDS	22595026	22595282	0.87	+	0	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	exon	22595026	22595282	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	intron	22595283	22595434	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	CDS	22595435	22595528	1	+	1	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	exon	22595435	22595528	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	intron	22595529	22595685	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	CDS	22595686	22595845	0.99	+	0	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	exon	22595686	22595845	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	intron	22595846	22595961	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	CDS	22595962	22596182	0.95	+	2	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	exon	22595962	22596182	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	intron	22596183	22596312	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	CDS	22596313	22596629	0.96	+	0	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	exon	22596313	22596629	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	intron	22596630	22596773	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	CDS	22596774	22596885	1	+	1	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	exon	22596774	22596885	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	intron	22596886	22597010	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	CDS	22597011	22597164	1	+	0	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	exon	22597011	22597164	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	intron	22597165	22597367	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	CDS	22597368	22597567	0.91	+	2	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	exon	22597368	22597567	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	intron	22597568	22597686	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	CDS	22597687	22597779	1	+	0	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	exon	22597687	22597779	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	intron	22597780	22597872	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	CDS	22597873	22597956	0.5	+	0	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	exon	22597873	22597956	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	intron	22597957	22598028	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	CDS	22598029	22598039	0.65	+	0	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	exon	22598029	22598039	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	intron	22598040	22598307	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	CDS	22598308	22598464	0.6	+	1	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	exon	22598308	22598464	.	+	.	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
Ledus.S1	AUGUSTUS	stop_codon	22598465	22598467	.	+	0	transcript_id "Ledus.S1G264900.t1"; gene_id "Ledus.S1G264900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3685.t1 is derived from g1121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10840615	10843661	.	-	.	Ledus.S1G110600
Ledus.S1	AUGUSTUS	transcript	10840615	10843661	.	-	.	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	stop_codon	10840612	10840614	.	-	0	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	CDS	10840615	10840779	0.87	-	0	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	exon	10840615	10840779	.	-	.	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	intron	10840780	10840884	.	-	.	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	CDS	10840885	10841026	0.98	-	1	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	exon	10840885	10841026	.	-	.	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	intron	10841027	10841130	.	-	.	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	CDS	10841131	10841247	1	-	1	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	exon	10841131	10841247	.	-	.	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	intron	10841248	10841363	.	-	.	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	CDS	10841364	10842237	1	-	2	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	exon	10841364	10842237	.	-	.	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	intron	10842238	10842322	.	-	.	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	CDS	10842323	10843661	0.49	-	0	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	exon	10842323	10843661	.	-	.	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
Ledus.S1	AUGUSTUS	start_codon	10843659	10843661	.	-	0	transcript_id "Ledus.S1G110600.t1"; gene_id "Ledus.S1G110600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5530.t1 is derived from g2969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24956653	24958453	.	-	.	Ledus.S1G295100
Ledus.S1	AUGUSTUS	transcript	24956653	24958453	.	-	.	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	stop_codon	24956650	24956652	.	-	0	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	CDS	24956653	24956781	0.89	-	0	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	exon	24956653	24956781	.	-	.	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	intron	24956782	24956895	.	-	.	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	CDS	24956896	24957540	1	-	0	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	exon	24956896	24957540	.	-	.	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	intron	24957541	24957625	.	-	.	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	CDS	24957626	24957964	1	-	0	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	exon	24957626	24957964	.	-	.	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	intron	24957965	24958045	.	-	.	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	CDS	24958046	24958453	0.62	-	0	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	exon	24958046	24958453	.	-	.	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
Ledus.S1	AUGUSTUS	start_codon	24958451	24958453	.	-	0	transcript_id "Ledus.S1G295100.t1"; gene_id "Ledus.S1G295100"
# This transcript jg8759.t2 is derived from g9789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8760.t1 is derived from g9790.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1865658	1870307	.	-	.	Ledus.S3G023700
Ledus.S3	AUGUSTUS	transcript	1865658	1870307	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	stop_codon	1865655	1865657	.	-	0	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	CDS	1865658	1867751	0.88	-	0	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	exon	1865658	1867751	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	intron	1867752	1867851	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	CDS	1867852	1868006	1	-	2	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	exon	1867852	1868006	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	intron	1868007	1868177	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	CDS	1868178	1868508	0.99	-	0	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	exon	1868178	1868508	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	intron	1868509	1868621	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	CDS	1868622	1868690	0.99	-	0	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	exon	1868622	1868690	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	intron	1868691	1868780	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	CDS	1868781	1868879	1	-	0	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	exon	1868781	1868879	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	intron	1868880	1869014	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	CDS	1869015	1869060	1	-	1	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	exon	1869015	1869060	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	intron	1869061	1869153	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	CDS	1869154	1869220	1	-	2	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	exon	1869154	1869220	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	intron	1869221	1869358	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	CDS	1869359	1869407	1	-	0	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	exon	1869359	1869407	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	intron	1869408	1869491	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	CDS	1869492	1870307	0.73	-	0	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	exon	1869492	1870307	.	-	.	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
Ledus.S3	AUGUSTUS	start_codon	1870305	1870307	.	-	0	transcript_id "Ledus.S3G023700.t1"; gene_id "Ledus.S3G023700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7482.t1 is derived from g12153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3125222	3125815	.	-	.	Ledus.S5G026000
Ledus.S5	AUGUSTUS	transcript	3125222	3125815	.	-	.	transcript_id "Ledus.S5G026000.t1"; gene_id "Ledus.S5G026000"
Ledus.S5	AUGUSTUS	stop_codon	3125219	3125221	.	-	0	transcript_id "Ledus.S5G026000.t1"; gene_id "Ledus.S5G026000"
Ledus.S5	AUGUSTUS	CDS	3125222	3125352	0.91	-	2	transcript_id "Ledus.S5G026000.t1"; gene_id "Ledus.S5G026000"
Ledus.S5	AUGUSTUS	exon	3125222	3125352	.	-	.	transcript_id "Ledus.S5G026000.t1"; gene_id "Ledus.S5G026000"
Ledus.S5	AUGUSTUS	intron	3125353	3125419	.	-	.	transcript_id "Ledus.S5G026000.t1"; gene_id "Ledus.S5G026000"
Ledus.S5	AUGUSTUS	CDS	3125420	3125508	0.91	-	1	transcript_id "Ledus.S5G026000.t1"; gene_id "Ledus.S5G026000"
Ledus.S5	AUGUSTUS	exon	3125420	3125508	.	-	.	transcript_id "Ledus.S5G026000.t1"; gene_id "Ledus.S5G026000"
Ledus.S5	AUGUSTUS	intron	3125509	3125699	.	-	.	transcript_id "Ledus.S5G026000.t1"; gene_id "Ledus.S5G026000"
Ledus.S5	AUGUSTUS	CDS	3125700	3125815	0.56	-	0	transcript_id "Ledus.S5G026000.t1"; gene_id "Ledus.S5G026000"
Ledus.S5	AUGUSTUS	exon	3125700	3125815	.	-	.	transcript_id "Ledus.S5G026000.t1"; gene_id "Ledus.S5G026000"
Ledus.S5	AUGUSTUS	start_codon	3125813	3125815	.	-	0	transcript_id "Ledus.S5G026000.t1"; gene_id "Ledus.S5G026000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11336.t1 is derived from g4954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3666374	3667021	.	-	.	Ledus.S4G049200
Ledus.S4	AUGUSTUS	transcript	3666374	3667021	.	-	.	transcript_id "Ledus.S4G049200.t1"; gene_id "Ledus.S4G049200"
Ledus.S4	AUGUSTUS	stop_codon	3666371	3666373	.	-	0	transcript_id "Ledus.S4G049200.t1"; gene_id "Ledus.S4G049200"
Ledus.S4	AUGUSTUS	CDS	3666374	3667021	0.64	-	0	transcript_id "Ledus.S4G049200.t1"; gene_id "Ledus.S4G049200"
Ledus.S4	AUGUSTUS	exon	3666374	3667021	.	-	.	transcript_id "Ledus.S4G049200.t1"; gene_id "Ledus.S4G049200"
Ledus.S4	AUGUSTUS	start_codon	3667019	3667021	.	-	0	transcript_id "Ledus.S4G049200.t1"; gene_id "Ledus.S4G049200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7473.t1 is derived from g12144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3032615	3034660	.	-	.	Ledus.S5G025100
Ledus.S5	AUGUSTUS	transcript	3032615	3034660	.	-	.	transcript_id "Ledus.S5G025100.t1"; gene_id "Ledus.S5G025100"
Ledus.S5	AUGUSTUS	stop_codon	3032612	3032614	.	-	0	transcript_id "Ledus.S5G025100.t1"; gene_id "Ledus.S5G025100"
Ledus.S5	AUGUSTUS	CDS	3032615	3034660	0.99	-	0	transcript_id "Ledus.S5G025100.t1"; gene_id "Ledus.S5G025100"
Ledus.S5	AUGUSTUS	exon	3032615	3034660	.	-	.	transcript_id "Ledus.S5G025100.t1"; gene_id "Ledus.S5G025100"
Ledus.S5	AUGUSTUS	start_codon	3034658	3034660	.	-	0	transcript_id "Ledus.S5G025100.t1"; gene_id "Ledus.S5G025100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13088.t1 is derived from g6898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5353197	5353457	.	-	.	Ledus.S6G015000
Ledus.S6	AUGUSTUS	transcript	5353197	5353457	.	-	.	transcript_id "Ledus.S6G015000.t1"; gene_id "Ledus.S6G015000"
Ledus.S6	AUGUSTUS	stop_codon	5353194	5353196	.	-	0	transcript_id "Ledus.S6G015000.t1"; gene_id "Ledus.S6G015000"
Ledus.S6	AUGUSTUS	CDS	5353197	5353457	0.75	-	0	transcript_id "Ledus.S6G015000.t1"; gene_id "Ledus.S6G015000"
Ledus.S6	AUGUSTUS	exon	5353197	5353457	.	-	.	transcript_id "Ledus.S6G015000.t1"; gene_id "Ledus.S6G015000"
Ledus.S6	AUGUSTUS	start_codon	5353455	5353457	.	-	0	transcript_id "Ledus.S6G015000.t1"; gene_id "Ledus.S6G015000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11152.t1 is derived from g4770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2204578	2205869	.	+	.	Ledus.S4G030800
Ledus.S4	AUGUSTUS	transcript	2204578	2205869	.	+	.	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	start_codon	2204578	2204580	.	+	0	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	CDS	2204578	2204631	0.51	+	0	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	exon	2204578	2204631	.	+	.	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	intron	2204632	2204883	.	+	.	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	CDS	2204884	2204952	0.93	+	0	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	exon	2204884	2204952	.	+	.	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	intron	2204953	2205214	.	+	.	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	CDS	2205215	2205280	0.55	+	0	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	exon	2205215	2205280	.	+	.	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	intron	2205281	2205654	.	+	.	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	CDS	2205655	2205674	0.72	+	0	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	exon	2205655	2205674	.	+	.	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	intron	2205675	2205850	.	+	.	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	CDS	2205851	2205869	0.72	+	1	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	exon	2205851	2205869	.	+	.	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
Ledus.S4	AUGUSTUS	stop_codon	2205870	2205872	.	+	0	transcript_id "Ledus.S4G030800.t1"; gene_id "Ledus.S4G030800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7016.t1 is derived from g6547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	822047	826391	.	-	.	Ledus.C7G007700
Ledus.C7	AUGUSTUS	transcript	822047	826391	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	stop_codon	822044	822046	.	-	0	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	822047	822574	0.97	-	0	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	822047	822574	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	822575	822652	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	822653	822742	1	-	0	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	822653	822742	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	822743	822838	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	822839	822967	0.99	-	0	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	822839	822967	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	822968	823076	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	823077	823192	0.98	-	2	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	823077	823192	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	823193	823294	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	823295	823346	1	-	0	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	823295	823346	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	823347	823481	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	823482	823595	1	-	0	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	823482	823595	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	823596	823672	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	823673	823881	0.99	-	2	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	823673	823881	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	823882	823989	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	823990	824275	0.85	-	0	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	823990	824275	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	824276	824393	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	824394	824696	0.91	-	0	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	824394	824696	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	824697	824910	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	824911	825061	1	-	1	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	824911	825061	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	825062	825206	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	825207	825341	1	-	1	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	825207	825341	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	825342	825421	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	825422	825570	0.93	-	0	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	825422	825570	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	825571	825645	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	825646	825687	0.55	-	0	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	825646	825687	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	intron	825688	825803	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	CDS	825804	826391	0.58	-	0	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	exon	825804	826391	.	-	.	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
Ledus.C7	AUGUSTUS	start_codon	826389	826391	.	-	0	transcript_id "Ledus.C7G007700.t1"; gene_id "Ledus.C7G007700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10907.t1 is derived from g4525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	402700	405300	.	+	.	Ledus.S4G006300
Ledus.S4	AUGUSTUS	transcript	402700	405300	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	start_codon	402700	402702	.	+	0	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	CDS	402700	402937	0.94	+	0	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	exon	402700	402937	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	intron	402938	403027	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	CDS	403028	403275	0.99	+	2	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	exon	403028	403275	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	intron	403276	403353	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	CDS	403354	403529	0.96	+	0	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	exon	403354	403529	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	intron	403530	403611	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	CDS	403612	403691	1	+	1	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	exon	403612	403691	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	intron	403692	403761	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	CDS	403762	404031	0.97	+	2	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	exon	403762	404031	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	intron	404032	404101	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	CDS	404102	404237	0.72	+	2	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	exon	404102	404237	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	intron	404238	404978	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	CDS	404979	405300	1	+	1	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	exon	404979	405300	.	+	.	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
Ledus.S4	AUGUSTUS	stop_codon	405301	405303	.	+	0	transcript_id "Ledus.S4G006300.t1"; gene_id "Ledus.S4G006300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9328.t1 is derived from g10358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6152430	6154701	.	-	.	Ledus.S3G080500
Ledus.S3	AUGUSTUS	transcript	6152430	6154701	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	stop_codon	6152427	6152429	.	-	0	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	CDS	6152430	6152688	1	-	1	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	exon	6152430	6152688	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	intron	6152689	6152778	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	CDS	6152779	6153004	1	-	2	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	exon	6152779	6153004	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	intron	6153005	6153090	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	CDS	6153091	6153169	0.99	-	0	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	exon	6153091	6153169	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	intron	6153170	6153273	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	CDS	6153274	6153363	1	-	0	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	exon	6153274	6153363	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	intron	6153364	6153458	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	CDS	6153459	6153716	1	-	0	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	exon	6153459	6153716	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	intron	6153717	6153796	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	CDS	6153797	6153946	1	-	0	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	exon	6153797	6153946	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	intron	6153947	6154083	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	CDS	6154084	6154402	1	-	1	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	exon	6154084	6154402	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	intron	6154403	6154507	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	CDS	6154508	6154701	0.29	-	0	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	exon	6154508	6154701	.	-	.	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
Ledus.S3	AUGUSTUS	start_codon	6154699	6154701	.	-	0	transcript_id "Ledus.S3G080500.t1"; gene_id "Ledus.S3G080500"
# This transcript jg4370.t2 is derived from g1806.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4371.t1 is derived from g1807.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16678449	16679724	.	+	.	Ledus.S1G179200
Ledus.S1	AUGUSTUS	transcript	16678449	16679724	.	+	.	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	start_codon	16678449	16678451	.	+	0	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	CDS	16678449	16678628	0.89	+	0	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	exon	16678449	16678628	.	+	.	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	intron	16678629	16678735	.	+	.	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	CDS	16678736	16678870	1	+	0	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	exon	16678736	16678870	.	+	.	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	intron	16678871	16678965	.	+	.	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	CDS	16678966	16679197	1	+	0	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	exon	16678966	16679197	.	+	.	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	intron	16679198	16679278	.	+	.	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	CDS	16679279	16679482	1	+	2	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	exon	16679279	16679482	.	+	.	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	intron	16679483	16679563	.	+	.	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	CDS	16679564	16679724	1	+	2	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	exon	16679564	16679724	.	+	.	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
Ledus.S1	AUGUSTUS	stop_codon	16679725	16679727	.	+	0	transcript_id "Ledus.S1G179200.t1"; gene_id "Ledus.S1G179200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg5208.t1 is derived from g2647.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22468672	22473545	.	+	.	Ledus.S1G262900
Ledus.S1	AUGUSTUS	transcript	22468672	22471335	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	start_codon	22468672	22468674	.	+	0	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22468672	22469046	0.98	+	0	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22468672	22469046	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22469047	22469129	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22469130	22469322	1	+	0	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22469130	22469322	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22469323	22469444	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22469445	22470187	1	+	2	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22469445	22470187	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22470188	22470362	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22470363	22470656	0.97	+	0	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22470363	22470656	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22470657	22470821	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22470822	22470979	1	+	0	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22470822	22470979	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22470980	22471068	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22471069	22471214	1	+	1	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22471069	22471214	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22471215	22471306	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22471307	22471335	1	+	2	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22471307	22471335	.	+	.	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	stop_codon	22471336	22471338	.	+	0	transcript_id "Ledus.S1G262900.t1"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	transcript	22471432	22473545	.	+	.	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	start_codon	22471432	22471434	.	+	0	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22471432	22471462	1	+	0	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22471432	22471462	.	+	.	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22471463	22471562	.	+	.	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22471563	22471750	1	+	2	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22471563	22471750	.	+	.	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22471751	22471841	.	+	.	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22471842	22472680	1	+	0	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22471842	22472680	.	+	.	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22472681	22472773	.	+	.	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22472774	22472933	1	+	1	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22472774	22472933	.	+	.	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22472934	22473012	.	+	.	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22473013	22473198	1	+	0	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22473013	22473198	.	+	.	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22473199	22473278	.	+	.	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22473279	22473545	0.95	+	0	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22473279	22473545	.	+	.	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	stop_codon	22473546	22473548	.	+	0	transcript_id "Ledus.S1G262900.t2"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	transcript	22468672	22473545	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	start_codon	22468672	22468674	.	+	0	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22468672	22469046	0.99	+	0	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22468672	22469046	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22469047	22469129	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22469130	22469322	1	+	0	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22469130	22469322	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22469323	22469444	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22469445	22470187	1	+	2	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22469445	22470187	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22470188	22470362	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22470363	22470656	0.94	+	0	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22470363	22470656	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22470657	22470821	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22470822	22470979	1	+	0	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22470822	22470979	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22470980	22471068	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22471069	22471198	0.81	+	1	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22471069	22471198	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22471199	22471306	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22471307	22471750	0.73	+	0	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22471307	22471750	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22471751	22471841	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22471842	22472680	0.98	+	0	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22471842	22472680	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22472681	22472773	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22472774	22472933	1	+	1	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22472774	22472933	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22472934	22473012	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22473013	22473198	1	+	0	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22473013	22473198	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	intron	22473199	22473278	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	CDS	22473279	22473545	0.89	+	0	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	exon	22473279	22473545	.	+	.	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
Ledus.S1	AUGUSTUS	stop_codon	22473546	22473548	.	+	0	transcript_id "Ledus.S1G262900.t3"; gene_id "Ledus.S1G262900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg979.t1 is derived from g7840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6448224	6448880	.	+	.	Ledus.S2G086100
Ledus.S2	AUGUSTUS	transcript	6448224	6448880	.	+	.	transcript_id "Ledus.S2G086100.t1"; gene_id "Ledus.S2G086100"
Ledus.S2	AUGUSTUS	start_codon	6448224	6448226	.	+	0	transcript_id "Ledus.S2G086100.t1"; gene_id "Ledus.S2G086100"
Ledus.S2	AUGUSTUS	CDS	6448224	6448416	0.36	+	0	transcript_id "Ledus.S2G086100.t1"; gene_id "Ledus.S2G086100"
Ledus.S2	AUGUSTUS	exon	6448224	6448416	.	+	.	transcript_id "Ledus.S2G086100.t1"; gene_id "Ledus.S2G086100"
Ledus.S2	AUGUSTUS	intron	6448417	6448620	.	+	.	transcript_id "Ledus.S2G086100.t1"; gene_id "Ledus.S2G086100"
Ledus.S2	AUGUSTUS	CDS	6448621	6448880	0.6	+	2	transcript_id "Ledus.S2G086100.t1"; gene_id "Ledus.S2G086100"
Ledus.S2	AUGUSTUS	exon	6448621	6448880	.	+	.	transcript_id "Ledus.S2G086100.t1"; gene_id "Ledus.S2G086100"
Ledus.S2	AUGUSTUS	stop_codon	6448881	6448883	.	+	0	transcript_id "Ledus.S2G086100.t1"; gene_id "Ledus.S2G086100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10772.t1 is derived from g11804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17575024	17578307	.	+	.	Ledus.S3G224900
Ledus.S3	AUGUSTUS	transcript	17575024	17578307	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	start_codon	17575024	17575026	.	+	0	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	CDS	17575024	17575158	0.94	+	0	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	exon	17575024	17575158	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	intron	17575159	17575267	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	CDS	17575268	17575354	0.95	+	0	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	exon	17575268	17575354	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	intron	17575355	17575522	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	CDS	17575523	17575602	0.98	+	0	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	exon	17575523	17575602	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	intron	17575603	17575713	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	CDS	17575714	17575780	0.98	+	1	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	exon	17575714	17575780	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	intron	17575781	17575862	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	CDS	17575863	17575925	1	+	0	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	exon	17575863	17575925	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	intron	17575926	17576062	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	CDS	17576063	17576170	0.81	+	0	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	exon	17576063	17576170	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	intron	17576171	17576299	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	CDS	17576300	17576362	1	+	0	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	exon	17576300	17576362	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	intron	17576363	17576445	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	CDS	17576446	17576517	1	+	0	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	exon	17576446	17576517	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	intron	17576518	17576605	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	CDS	17576606	17578021	0.91	+	0	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	exon	17576606	17578021	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	intron	17578022	17578143	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	CDS	17578144	17578179	0.31	+	0	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	exon	17578144	17578179	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	intron	17578180	17578289	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	CDS	17578290	17578307	0.5	+	0	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	exon	17578290	17578307	.	+	.	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
Ledus.S3	AUGUSTUS	stop_codon	17578308	17578310	.	+	0	transcript_id "Ledus.S3G224900.t1"; gene_id "Ledus.S3G224900"
# This transcript jg9574.t2 is derived from g10604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9575.t1 is derived from g10605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7889313	7889656	.	-	.	Ledus.S3G105200
Ledus.S3	AUGUSTUS	transcript	7889313	7889656	.	-	.	transcript_id "Ledus.S3G105200.t1"; gene_id "Ledus.S3G105200"
Ledus.S3	AUGUSTUS	stop_codon	7889310	7889312	.	-	0	transcript_id "Ledus.S3G105200.t1"; gene_id "Ledus.S3G105200"
Ledus.S3	AUGUSTUS	CDS	7889313	7889412	0.49	-	1	transcript_id "Ledus.S3G105200.t1"; gene_id "Ledus.S3G105200"
Ledus.S3	AUGUSTUS	exon	7889313	7889412	.	-	.	transcript_id "Ledus.S3G105200.t1"; gene_id "Ledus.S3G105200"
Ledus.S3	AUGUSTUS	intron	7889413	7889519	.	-	.	transcript_id "Ledus.S3G105200.t1"; gene_id "Ledus.S3G105200"
Ledus.S3	AUGUSTUS	CDS	7889520	7889656	0.61	-	0	transcript_id "Ledus.S3G105200.t1"; gene_id "Ledus.S3G105200"
Ledus.S3	AUGUSTUS	exon	7889520	7889656	.	-	.	transcript_id "Ledus.S3G105200.t1"; gene_id "Ledus.S3G105200"
Ledus.S3	AUGUSTUS	start_codon	7889654	7889656	.	-	0	transcript_id "Ledus.S3G105200.t1"; gene_id "Ledus.S3G105200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12501.t1 is derived from g6122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12413319	12413648	.	+	.	Ledus.S4G165700
Ledus.S4	AUGUSTUS	transcript	12413319	12413648	.	+	.	transcript_id "Ledus.S4G165700.t1"; gene_id "Ledus.S4G165700"
Ledus.S4	AUGUSTUS	start_codon	12413319	12413321	.	+	0	transcript_id "Ledus.S4G165700.t1"; gene_id "Ledus.S4G165700"
Ledus.S4	AUGUSTUS	CDS	12413319	12413648	0.91	+	0	transcript_id "Ledus.S4G165700.t1"; gene_id "Ledus.S4G165700"
Ledus.S4	AUGUSTUS	exon	12413319	12413648	.	+	.	transcript_id "Ledus.S4G165700.t1"; gene_id "Ledus.S4G165700"
Ledus.S4	AUGUSTUS	stop_codon	12413649	12413651	.	+	0	transcript_id "Ledus.S4G165700.t1"; gene_id "Ledus.S4G165700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4510.t1 is derived from g1946.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17451124	17453231	.	+	.	Ledus.S1G193100
Ledus.S1	AUGUSTUS	transcript	17451124	17453231	.	+	.	transcript_id "Ledus.S1G193100.t1"; gene_id "Ledus.S1G193100"
Ledus.S1	AUGUSTUS	start_codon	17451124	17451126	.	+	0	transcript_id "Ledus.S1G193100.t1"; gene_id "Ledus.S1G193100"
Ledus.S1	AUGUSTUS	CDS	17451124	17451176	0.7	+	0	transcript_id "Ledus.S1G193100.t1"; gene_id "Ledus.S1G193100"
Ledus.S1	AUGUSTUS	exon	17451124	17451176	.	+	.	transcript_id "Ledus.S1G193100.t1"; gene_id "Ledus.S1G193100"
Ledus.S1	AUGUSTUS	intron	17451177	17451442	.	+	.	transcript_id "Ledus.S1G193100.t1"; gene_id "Ledus.S1G193100"
Ledus.S1	AUGUSTUS	CDS	17451443	17453231	0.93	+	1	transcript_id "Ledus.S1G193100.t1"; gene_id "Ledus.S1G193100"
Ledus.S1	AUGUSTUS	exon	17451443	17453231	.	+	.	transcript_id "Ledus.S1G193100.t1"; gene_id "Ledus.S1G193100"
Ledus.S1	AUGUSTUS	stop_codon	17453232	17453234	.	+	0	transcript_id "Ledus.S1G193100.t1"; gene_id "Ledus.S1G193100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10416.t1 is derived from g11446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15037966	15039038	.	+	.	Ledus.S3G189300
Ledus.S3	AUGUSTUS	transcript	15037966	15039038	.	+	.	transcript_id "Ledus.S3G189300.t1"; gene_id "Ledus.S3G189300"
Ledus.S3	AUGUSTUS	start_codon	15037966	15037968	.	+	0	transcript_id "Ledus.S3G189300.t1"; gene_id "Ledus.S3G189300"
Ledus.S3	AUGUSTUS	CDS	15037966	15038037	0.98	+	0	transcript_id "Ledus.S3G189300.t1"; gene_id "Ledus.S3G189300"
Ledus.S3	AUGUSTUS	exon	15037966	15038037	.	+	.	transcript_id "Ledus.S3G189300.t1"; gene_id "Ledus.S3G189300"
Ledus.S3	AUGUSTUS	intron	15038038	15038126	.	+	.	transcript_id "Ledus.S3G189300.t1"; gene_id "Ledus.S3G189300"
Ledus.S3	AUGUSTUS	CDS	15038127	15039038	0.99	+	0	transcript_id "Ledus.S3G189300.t1"; gene_id "Ledus.S3G189300"
Ledus.S3	AUGUSTUS	exon	15038127	15039038	.	+	.	transcript_id "Ledus.S3G189300.t1"; gene_id "Ledus.S3G189300"
Ledus.S3	AUGUSTUS	stop_codon	15039039	15039041	.	+	0	transcript_id "Ledus.S3G189300.t1"; gene_id "Ledus.S3G189300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2547.t1 is derived from g9410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18869242	18869511	.	+	.	Ledus.S2G242900
Ledus.S2	AUGUSTUS	transcript	18869242	18869511	.	+	.	transcript_id "Ledus.S2G242900.t1"; gene_id "Ledus.S2G242900"
Ledus.S2	AUGUSTUS	start_codon	18869242	18869244	.	+	0	transcript_id "Ledus.S2G242900.t1"; gene_id "Ledus.S2G242900"
Ledus.S2	AUGUSTUS	CDS	18869242	18869511	0.5	+	0	transcript_id "Ledus.S2G242900.t1"; gene_id "Ledus.S2G242900"
Ledus.S2	AUGUSTUS	exon	18869242	18869511	.	+	.	transcript_id "Ledus.S2G242900.t1"; gene_id "Ledus.S2G242900"
Ledus.S2	AUGUSTUS	stop_codon	18869512	18869514	.	+	0	transcript_id "Ledus.S2G242900.t1"; gene_id "Ledus.S2G242900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11371.t1 is derived from g4989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3871842	3874021	.	+	.	Ledus.S4G052700
Ledus.S4	AUGUSTUS	transcript	3871842	3874021	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	start_codon	3871842	3871844	.	+	0	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	CDS	3871842	3871870	0.63	+	0	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	exon	3871842	3871870	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	intron	3871871	3872105	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	CDS	3872106	3872458	0.67	+	1	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	exon	3872106	3872458	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	intron	3872459	3872546	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	CDS	3872547	3872791	1	+	2	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	exon	3872547	3872791	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	intron	3872792	3872874	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	CDS	3872875	3873129	1	+	0	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	exon	3872875	3873129	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	intron	3873130	3873389	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	CDS	3873390	3873527	1	+	0	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	exon	3873390	3873527	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	intron	3873528	3873649	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	CDS	3873650	3873708	1	+	0	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	exon	3873650	3873708	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	intron	3873709	3873918	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	CDS	3873919	3874021	0.92	+	1	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	exon	3873919	3874021	.	+	.	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
Ledus.S4	AUGUSTUS	stop_codon	3874022	3874024	.	+	0	transcript_id "Ledus.S4G052700.t1"; gene_id "Ledus.S4G052700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4608.t1 is derived from g2045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18133684	18134052	.	+	.	Ledus.S1G202900
Ledus.S1	AUGUSTUS	transcript	18133684	18134052	.	+	.	transcript_id "Ledus.S1G202900.t1"; gene_id "Ledus.S1G202900"
Ledus.S1	AUGUSTUS	start_codon	18133684	18133686	.	+	0	transcript_id "Ledus.S1G202900.t1"; gene_id "Ledus.S1G202900"
Ledus.S1	AUGUSTUS	CDS	18133684	18134052	0.7	+	0	transcript_id "Ledus.S1G202900.t1"; gene_id "Ledus.S1G202900"
Ledus.S1	AUGUSTUS	exon	18133684	18134052	.	+	.	transcript_id "Ledus.S1G202900.t1"; gene_id "Ledus.S1G202900"
Ledus.S1	AUGUSTUS	stop_codon	18134053	18134055	.	+	0	transcript_id "Ledus.S1G202900.t1"; gene_id "Ledus.S1G202900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7159.t1 is derived from g6690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1839937	1841337	.	+	.	Ledus.C7G022000
Ledus.C7	AUGUSTUS	transcript	1839937	1841337	.	+	.	transcript_id "Ledus.C7G022000.t1"; gene_id "Ledus.C7G022000"
Ledus.C7	AUGUSTUS	start_codon	1839937	1839939	.	+	0	transcript_id "Ledus.C7G022000.t1"; gene_id "Ledus.C7G022000"
Ledus.C7	AUGUSTUS	CDS	1839937	1841337	0.93	+	0	transcript_id "Ledus.C7G022000.t1"; gene_id "Ledus.C7G022000"
Ledus.C7	AUGUSTUS	exon	1839937	1841337	.	+	.	transcript_id "Ledus.C7G022000.t1"; gene_id "Ledus.C7G022000"
Ledus.C7	AUGUSTUS	stop_codon	1841338	1841340	.	+	0	transcript_id "Ledus.C7G022000.t1"; gene_id "Ledus.C7G022000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5566.t1 is derived from g3005.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25169481	25173726	.	-	.	Ledus.S1G298700
Ledus.S1	AUGUSTUS	transcript	25169481	25173726	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	stop_codon	25169478	25169480	.	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25169481	25169571	0.54	-	1	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25169481	25169571	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25169572	25169676	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25169677	25169819	0.71	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25169677	25169819	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25169820	25169952	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25169953	25170036	1	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25169953	25170036	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25170037	25170111	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25170112	25170171	1	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25170112	25170171	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25170172	25170295	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25170296	25170376	1	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25170296	25170376	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25170377	25170472	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25170473	25170586	1	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25170473	25170586	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25170587	25170724	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25170725	25170797	0.99	-	1	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25170725	25170797	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25170798	25170902	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25170903	25171066	0.89	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25170903	25171066	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25171067	25171149	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25171150	25171343	1	-	2	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25171150	25171343	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25171344	25171485	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25171486	25171561	1	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25171486	25171561	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25171562	25171688	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25171689	25172026	0.43	-	2	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25171689	25172026	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25172027	25172134	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25172135	25172222	0.97	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25172135	25172222	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25172223	25172363	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25172364	25172444	1	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25172364	25172444	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25172445	25172569	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25172570	25172719	1	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25172570	25172719	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25172720	25172806	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25172807	25172866	1	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25172807	25172866	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25172867	25172967	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25172968	25173190	1	-	1	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25172968	25173190	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25173191	25173270	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25173271	25173439	1	-	2	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25173271	25173439	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25173440	25173520	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25173521	25173605	1	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25173521	25173605	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25173606	25173687	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25173688	25173726	1	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25173688	25173726	.	-	.	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	start_codon	25173724	25173726	.	-	0	transcript_id "Ledus.S1G298700.t1"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	transcript	25169481	25173726	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	stop_codon	25169478	25169480	.	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25169481	25169571	0.4	-	1	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25169481	25169571	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25169572	25169676	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25169677	25169819	0.59	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25169677	25169819	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25169820	25169952	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25169953	25170036	1	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25169953	25170036	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25170037	25170111	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25170112	25170171	1	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25170112	25170171	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25170172	25170295	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25170296	25170376	1	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25170296	25170376	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25170377	25170472	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25170473	25170586	1	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25170473	25170586	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25170587	25170724	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25170725	25170797	1	-	1	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25170725	25170797	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25170798	25170902	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25170903	25171066	0.87	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25170903	25171066	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25171067	25171149	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25171150	25171343	1	-	2	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25171150	25171343	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25171344	25171485	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25171486	25171561	1	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25171486	25171561	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25171562	25171688	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25171689	25172026	0.45	-	2	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25171689	25172026	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25172027	25172134	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25172135	25172222	0.98	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25172135	25172222	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25172223	25172363	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25172364	25172444	1	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25172364	25172444	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25172445	25172569	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25172570	25172719	1	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25172570	25172719	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25172720	25172806	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25172807	25172866	1	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25172807	25172866	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25172867	25172967	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25172968	25173190	1	-	1	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25172968	25173190	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25173191	25173270	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25173271	25173439	1	-	2	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25173271	25173439	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25173440	25173520	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25173521	25173602	1	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25173521	25173602	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	intron	25173603	25173687	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	CDS	25173688	25173726	1	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	exon	25173688	25173726	.	-	.	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
Ledus.S1	AUGUSTUS	start_codon	25173724	25173726	.	-	0	transcript_id "Ledus.S1G298700.t2"; gene_id "Ledus.S1G298700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1573.t1 is derived from g8434.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11025374	11025934	.	+	.	Ledus.S2G145500
Ledus.S2	AUGUSTUS	transcript	11025374	11025934	.	+	.	transcript_id "Ledus.S2G145500.t1"; gene_id "Ledus.S2G145500"
Ledus.S2	AUGUSTUS	start_codon	11025374	11025376	.	+	0	transcript_id "Ledus.S2G145500.t1"; gene_id "Ledus.S2G145500"
Ledus.S2	AUGUSTUS	CDS	11025374	11025934	0.97	+	0	transcript_id "Ledus.S2G145500.t1"; gene_id "Ledus.S2G145500"
Ledus.S2	AUGUSTUS	exon	11025374	11025934	.	+	.	transcript_id "Ledus.S2G145500.t1"; gene_id "Ledus.S2G145500"
Ledus.S2	AUGUSTUS	stop_codon	11025935	11025937	.	+	0	transcript_id "Ledus.S2G145500.t1"; gene_id "Ledus.S2G145500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11892.t1 is derived from g5511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7569255	7570916	.	+	.	Ledus.S4G104800
Ledus.S4	AUGUSTUS	transcript	7569255	7570916	.	+	.	transcript_id "Ledus.S4G104800.t1"; gene_id "Ledus.S4G104800"
Ledus.S4	AUGUSTUS	start_codon	7569255	7569257	.	+	0	transcript_id "Ledus.S4G104800.t1"; gene_id "Ledus.S4G104800"
Ledus.S4	AUGUSTUS	CDS	7569255	7569315	0.98	+	0	transcript_id "Ledus.S4G104800.t1"; gene_id "Ledus.S4G104800"
Ledus.S4	AUGUSTUS	exon	7569255	7569315	.	+	.	transcript_id "Ledus.S4G104800.t1"; gene_id "Ledus.S4G104800"
Ledus.S4	AUGUSTUS	intron	7569316	7569392	.	+	.	transcript_id "Ledus.S4G104800.t1"; gene_id "Ledus.S4G104800"
Ledus.S4	AUGUSTUS	CDS	7569393	7570459	1	+	2	transcript_id "Ledus.S4G104800.t1"; gene_id "Ledus.S4G104800"
Ledus.S4	AUGUSTUS	exon	7569393	7570459	.	+	.	transcript_id "Ledus.S4G104800.t1"; gene_id "Ledus.S4G104800"
Ledus.S4	AUGUSTUS	intron	7570460	7570526	.	+	.	transcript_id "Ledus.S4G104800.t1"; gene_id "Ledus.S4G104800"
Ledus.S4	AUGUSTUS	CDS	7570527	7570916	1	+	0	transcript_id "Ledus.S4G104800.t1"; gene_id "Ledus.S4G104800"
Ledus.S4	AUGUSTUS	exon	7570527	7570916	.	+	.	transcript_id "Ledus.S4G104800.t1"; gene_id "Ledus.S4G104800"
Ledus.S4	AUGUSTUS	stop_codon	7570917	7570919	.	+	0	transcript_id "Ledus.S4G104800.t1"; gene_id "Ledus.S4G104800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9169.t1 is derived from g10199.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5204456	5205719	.	+	.	Ledus.S3G064600
Ledus.S3	AUGUSTUS	transcript	5204456	5205719	.	+	.	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	start_codon	5204456	5204458	.	+	0	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	CDS	5204456	5204680	0.98	+	0	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	exon	5204456	5204680	.	+	.	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	intron	5204681	5204815	.	+	.	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	CDS	5204816	5204929	1	+	0	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	exon	5204816	5204929	.	+	.	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	intron	5204930	5204995	.	+	.	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	CDS	5204996	5205060	1	+	0	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	exon	5204996	5205060	.	+	.	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	intron	5205061	5205144	.	+	.	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	CDS	5205145	5205272	0.87	+	1	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	exon	5205145	5205272	.	+	.	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	intron	5205273	5205591	.	+	.	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	CDS	5205592	5205719	0.89	+	2	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	exon	5205592	5205719	.	+	.	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	stop_codon	5205720	5205722	.	+	0	transcript_id "Ledus.S3G064600.t1"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	transcript	5204456	5205719	.	+	.	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	start_codon	5204456	5204458	.	+	0	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	CDS	5204456	5204722	0.95	+	0	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	exon	5204456	5204722	.	+	.	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	intron	5204723	5204815	.	+	.	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	CDS	5204816	5204929	1	+	0	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	exon	5204816	5204929	.	+	.	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	intron	5204930	5204995	.	+	.	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	CDS	5204996	5205060	1	+	0	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	exon	5204996	5205060	.	+	.	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	intron	5205061	5205144	.	+	.	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	CDS	5205145	5205272	0.89	+	1	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	exon	5205145	5205272	.	+	.	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	intron	5205273	5205591	.	+	.	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	CDS	5205592	5205719	0.81	+	2	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	exon	5205592	5205719	.	+	.	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
Ledus.S3	AUGUSTUS	stop_codon	5205720	5205722	.	+	0	transcript_id "Ledus.S3G064600.t2"; gene_id "Ledus.S3G064600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7631.t1 is derived from g12302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4568931	4569263	.	-	.	Ledus.S5G040900
Ledus.S5	AUGUSTUS	transcript	4568931	4569263	.	-	.	transcript_id "Ledus.S5G040900.t1"; gene_id "Ledus.S5G040900"
Ledus.S5	AUGUSTUS	stop_codon	4568928	4568930	.	-	0	transcript_id "Ledus.S5G040900.t1"; gene_id "Ledus.S5G040900"
Ledus.S5	AUGUSTUS	CDS	4568931	4569263	0.82	-	0	transcript_id "Ledus.S5G040900.t1"; gene_id "Ledus.S5G040900"
Ledus.S5	AUGUSTUS	exon	4568931	4569263	.	-	.	transcript_id "Ledus.S5G040900.t1"; gene_id "Ledus.S5G040900"
Ledus.S5	AUGUSTUS	start_codon	4569261	4569263	.	-	0	transcript_id "Ledus.S5G040900.t1"; gene_id "Ledus.S5G040900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2229.t1 is derived from g9092.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16183789	16184293	.	-	.	Ledus.S2G211100
Ledus.S2	AUGUSTUS	transcript	16183789	16184293	.	-	.	transcript_id "Ledus.S2G211100.t1"; gene_id "Ledus.S2G211100"
Ledus.S2	AUGUSTUS	stop_codon	16183786	16183788	.	-	0	transcript_id "Ledus.S2G211100.t1"; gene_id "Ledus.S2G211100"
Ledus.S2	AUGUSTUS	CDS	16183789	16184153	0.21	-	2	transcript_id "Ledus.S2G211100.t1"; gene_id "Ledus.S2G211100"
Ledus.S2	AUGUSTUS	exon	16183789	16184153	.	-	.	transcript_id "Ledus.S2G211100.t1"; gene_id "Ledus.S2G211100"
Ledus.S2	AUGUSTUS	intron	16184154	16184244	.	-	.	transcript_id "Ledus.S2G211100.t1"; gene_id "Ledus.S2G211100"
Ledus.S2	AUGUSTUS	CDS	16184245	16184293	0.41	-	0	transcript_id "Ledus.S2G211100.t1"; gene_id "Ledus.S2G211100"
Ledus.S2	AUGUSTUS	exon	16184245	16184293	.	-	.	transcript_id "Ledus.S2G211100.t1"; gene_id "Ledus.S2G211100"
Ledus.S2	AUGUSTUS	start_codon	16184291	16184293	.	-	0	transcript_id "Ledus.S2G211100.t1"; gene_id "Ledus.S2G211100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12556.t1 is derived from g6178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12859936	12861476	.	-	.	Ledus.S4G171200
Ledus.S4	AUGUSTUS	transcript	12859936	12861476	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	stop_codon	12859933	12859935	.	-	0	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	CDS	12859936	12860061	1	-	0	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	exon	12859936	12860061	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	intron	12860062	12860163	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	CDS	12860164	12860295	0.95	-	0	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	exon	12860164	12860295	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	intron	12860296	12860389	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	CDS	12860390	12860476	1	-	0	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	exon	12860390	12860476	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	intron	12860477	12860570	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	CDS	12860571	12860653	1	-	2	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	exon	12860571	12860653	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	intron	12860654	12860813	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	CDS	12860814	12860976	1	-	0	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	exon	12860814	12860976	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	intron	12860977	12861121	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	CDS	12861122	12861254	1	-	1	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	exon	12861122	12861254	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	intron	12861255	12861333	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	CDS	12861334	12861476	0.83	-	0	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	exon	12861334	12861476	.	-	.	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
Ledus.S4	AUGUSTUS	start_codon	12861474	12861476	.	-	0	transcript_id "Ledus.S4G171200.t1"; gene_id "Ledus.S4G171200"
# This transcript jg2985.t2 is derived from g420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2985.t3 is derived from g420.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2986.t1 is derived from g421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5164407	5166772	.	+	.	Ledus.S1G040700
Ledus.S1	AUGUSTUS	transcript	5164407	5166772	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	start_codon	5164407	5164409	.	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5164407	5164478	1	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5164407	5164478	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	intron	5164479	5164574	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5164575	5164673	1	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5164575	5164673	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	intron	5164674	5164756	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5164757	5164927	1	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5164757	5164927	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	intron	5164928	5165024	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5165025	5165090	1	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5165025	5165090	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	intron	5165091	5165214	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5165215	5165280	1	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5165215	5165280	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	intron	5165281	5165359	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5165360	5165521	1	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5165360	5165521	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	intron	5165522	5165613	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5165614	5165658	1	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5165614	5165658	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	intron	5165659	5165752	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5165753	5165889	1	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5165753	5165889	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	intron	5165890	5166012	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5166013	5166103	1	+	1	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5166013	5166103	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	intron	5166104	5166197	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5166198	5166266	1	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5166198	5166266	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	intron	5166267	5166353	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5166354	5166445	1	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5166354	5166445	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	intron	5166446	5166518	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5166519	5166582	1	+	1	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5166519	5166582	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	intron	5166583	5166670	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	CDS	5166671	5166772	1	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	exon	5166671	5166772	.	+	.	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
Ledus.S1	AUGUSTUS	stop_codon	5166773	5166775	.	+	0	transcript_id "Ledus.S1G040700.t1"; gene_id "Ledus.S1G040700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8701.t1 is derived from g9731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1477984	1478467	.	-	.	Ledus.S3G017800
Ledus.S3	AUGUSTUS	transcript	1477984	1478467	.	-	.	transcript_id "Ledus.S3G017800.t1"; gene_id "Ledus.S3G017800"
Ledus.S3	AUGUSTUS	stop_codon	1477981	1477983	.	-	0	transcript_id "Ledus.S3G017800.t1"; gene_id "Ledus.S3G017800"
Ledus.S3	AUGUSTUS	CDS	1477984	1478023	0.66	-	1	transcript_id "Ledus.S3G017800.t1"; gene_id "Ledus.S3G017800"
Ledus.S3	AUGUSTUS	exon	1477984	1478023	.	-	.	transcript_id "Ledus.S3G017800.t1"; gene_id "Ledus.S3G017800"
Ledus.S3	AUGUSTUS	intron	1478024	1478111	.	-	.	transcript_id "Ledus.S3G017800.t1"; gene_id "Ledus.S3G017800"
Ledus.S3	AUGUSTUS	CDS	1478112	1478260	0.99	-	0	transcript_id "Ledus.S3G017800.t1"; gene_id "Ledus.S3G017800"
Ledus.S3	AUGUSTUS	exon	1478112	1478260	.	-	.	transcript_id "Ledus.S3G017800.t1"; gene_id "Ledus.S3G017800"
Ledus.S3	AUGUSTUS	intron	1478261	1478344	.	-	.	transcript_id "Ledus.S3G017800.t1"; gene_id "Ledus.S3G017800"
Ledus.S3	AUGUSTUS	CDS	1478345	1478467	0.98	-	0	transcript_id "Ledus.S3G017800.t1"; gene_id "Ledus.S3G017800"
Ledus.S3	AUGUSTUS	exon	1478345	1478467	.	-	.	transcript_id "Ledus.S3G017800.t1"; gene_id "Ledus.S3G017800"
Ledus.S3	AUGUSTUS	start_codon	1478465	1478467	.	-	0	transcript_id "Ledus.S3G017800.t1"; gene_id "Ledus.S3G017800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg831.t1 is derived from g7692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5448912	5449202	.	+	.	Ledus.S2G071300
Ledus.S2	AUGUSTUS	transcript	5448912	5449202	.	+	.	transcript_id "Ledus.S2G071300.t1"; gene_id "Ledus.S2G071300"
Ledus.S2	AUGUSTUS	start_codon	5448912	5448914	.	+	0	transcript_id "Ledus.S2G071300.t1"; gene_id "Ledus.S2G071300"
Ledus.S2	AUGUSTUS	CDS	5448912	5449202	0.65	+	0	transcript_id "Ledus.S2G071300.t1"; gene_id "Ledus.S2G071300"
Ledus.S2	AUGUSTUS	exon	5448912	5449202	.	+	.	transcript_id "Ledus.S2G071300.t1"; gene_id "Ledus.S2G071300"
Ledus.S2	AUGUSTUS	stop_codon	5449203	5449205	.	+	0	transcript_id "Ledus.S2G071300.t1"; gene_id "Ledus.S2G071300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9609.t1 is derived from g10639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8384930	8386123	.	+	.	Ledus.S3G108600
Ledus.S3	AUGUSTUS	transcript	8384930	8386123	.	+	.	transcript_id "Ledus.S3G108600.t1"; gene_id "Ledus.S3G108600"
Ledus.S3	AUGUSTUS	start_codon	8384930	8384932	.	+	0	transcript_id "Ledus.S3G108600.t1"; gene_id "Ledus.S3G108600"
Ledus.S3	AUGUSTUS	CDS	8384930	8386123	0.27	+	0	transcript_id "Ledus.S3G108600.t1"; gene_id "Ledus.S3G108600"
Ledus.S3	AUGUSTUS	exon	8384930	8386123	.	+	.	transcript_id "Ledus.S3G108600.t1"; gene_id "Ledus.S3G108600"
Ledus.S3	AUGUSTUS	stop_codon	8386124	8386126	.	+	0	transcript_id "Ledus.S3G108600.t1"; gene_id "Ledus.S3G108600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3950.t1 is derived from g1386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13701501	13702358	.	-	.	Ledus.S1G137100
Ledus.S1	AUGUSTUS	transcript	13701501	13702358	.	-	.	transcript_id "Ledus.S1G137100.t1"; gene_id "Ledus.S1G137100"
Ledus.S1	AUGUSTUS	stop_codon	13701498	13701500	.	-	0	transcript_id "Ledus.S1G137100.t1"; gene_id "Ledus.S1G137100"
Ledus.S1	AUGUSTUS	CDS	13701501	13701994	1	-	2	transcript_id "Ledus.S1G137100.t1"; gene_id "Ledus.S1G137100"
Ledus.S1	AUGUSTUS	exon	13701501	13701994	.	-	.	transcript_id "Ledus.S1G137100.t1"; gene_id "Ledus.S1G137100"
Ledus.S1	AUGUSTUS	intron	13701995	13702078	.	-	.	transcript_id "Ledus.S1G137100.t1"; gene_id "Ledus.S1G137100"
Ledus.S1	AUGUSTUS	CDS	13702079	13702127	1	-	0	transcript_id "Ledus.S1G137100.t1"; gene_id "Ledus.S1G137100"
Ledus.S1	AUGUSTUS	exon	13702079	13702127	.	-	.	transcript_id "Ledus.S1G137100.t1"; gene_id "Ledus.S1G137100"
Ledus.S1	AUGUSTUS	intron	13702128	13702217	.	-	.	transcript_id "Ledus.S1G137100.t1"; gene_id "Ledus.S1G137100"
Ledus.S1	AUGUSTUS	CDS	13702218	13702358	1	-	0	transcript_id "Ledus.S1G137100.t1"; gene_id "Ledus.S1G137100"
Ledus.S1	AUGUSTUS	exon	13702218	13702358	.	-	.	transcript_id "Ledus.S1G137100.t1"; gene_id "Ledus.S1G137100"
Ledus.S1	AUGUSTUS	start_codon	13702356	13702358	.	-	0	transcript_id "Ledus.S1G137100.t1"; gene_id "Ledus.S1G137100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8078.t1 is derived from g12749.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9061340	9065238	.	+	.	Ledus.S5G085600
Ledus.S5	AUGUSTUS	transcript	9061340	9065238	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	start_codon	9061340	9061342	.	+	0	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	CDS	9061340	9062029	0.35	+	0	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	exon	9061340	9062029	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	intron	9062030	9062218	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	CDS	9062219	9062343	1	+	0	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	exon	9062219	9062343	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	intron	9062344	9062488	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	CDS	9062489	9062687	0.74	+	1	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	exon	9062489	9062687	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	intron	9062688	9062816	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	CDS	9062817	9063045	1	+	0	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	exon	9062817	9063045	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	intron	9063046	9063218	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	CDS	9063219	9063385	1	+	2	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	exon	9063219	9063385	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	intron	9063386	9063505	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	CDS	9063506	9063715	1	+	0	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	exon	9063506	9063715	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	intron	9063716	9063881	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	CDS	9063882	9063992	1	+	0	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	exon	9063882	9063992	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	intron	9063993	9064109	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	CDS	9064110	9064286	0.99	+	0	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	exon	9064110	9064286	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	intron	9064287	9064408	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	CDS	9064409	9064858	0.99	+	0	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	exon	9064409	9064858	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	intron	9064859	9064944	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	CDS	9064945	9065238	0.6	+	0	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	exon	9064945	9065238	.	+	.	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
Ledus.S5	AUGUSTUS	stop_codon	9065239	9065241	.	+	0	transcript_id "Ledus.S5G085600.t1"; gene_id "Ledus.S5G085600"
# This transcript jg10670.t2 is derived from g11700.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10671.t1 is derived from g11701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17012163	17015144	.	-	.	Ledus.S3G214800
Ledus.S3	AUGUSTUS	transcript	17012163	17015144	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	stop_codon	17012160	17012162	.	-	0	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	CDS	17012163	17012650	1	-	2	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	exon	17012163	17012650	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	intron	17012651	17012730	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	CDS	17012731	17013000	1	-	2	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	exon	17012731	17013000	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	intron	17013001	17013078	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	CDS	17013079	17013385	0.92	-	0	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	exon	17013079	17013385	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	intron	17013386	17013492	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	CDS	17013493	17013779	0.96	-	2	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	exon	17013493	17013779	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	intron	17013780	17013860	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	CDS	17013861	17014052	0.93	-	2	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	exon	17013861	17014052	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	intron	17014053	17014414	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	CDS	17014415	17014583	0.16	-	0	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	exon	17014415	17014583	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	intron	17014584	17014658	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	CDS	17014659	17014739	0.57	-	0	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	exon	17014659	17014739	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	intron	17014740	17014818	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	CDS	17014819	17014897	0.85	-	1	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	exon	17014819	17014897	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	intron	17014898	17014998	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	CDS	17014999	17015144	0.55	-	0	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	exon	17014999	17015144	.	-	.	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
Ledus.S3	AUGUSTUS	start_codon	17015142	17015144	.	-	0	transcript_id "Ledus.S3G214800.t1"; gene_id "Ledus.S3G214800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6784.t1 is derived from g4228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34132974	34136407	.	+	.	Ledus.S1G420500
Ledus.S1	AUGUSTUS	transcript	34132974	34136407	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	start_codon	34132974	34132976	.	+	0	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34132974	34133045	1	+	0	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34132974	34133045	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	intron	34133046	34133168	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34133169	34133275	1	+	0	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34133169	34133275	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	intron	34133276	34133357	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34133358	34133490	1	+	1	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34133358	34133490	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	intron	34133491	34133767	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34133768	34133911	1	+	0	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34133768	34133911	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	intron	34133912	34134067	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34134068	34134226	1	+	0	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34134068	34134226	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	intron	34134227	34134493	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34134494	34134567	1	+	0	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34134494	34134567	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	intron	34134568	34134663	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34134664	34134739	1	+	1	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34134664	34134739	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	intron	34134740	34134858	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34134859	34134914	0.96	+	0	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34134859	34134914	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	intron	34134915	34135009	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34135010	34135097	1	+	1	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34135010	34135097	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	intron	34135098	34135181	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34135182	34135322	1	+	0	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34135182	34135322	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	intron	34135323	34135424	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34135425	34135571	1	+	0	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34135425	34135571	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	intron	34135572	34135754	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34135755	34135893	1	+	0	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34135755	34135893	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	intron	34135894	34136327	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	CDS	34136328	34136407	0.48	+	2	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	exon	34136328	34136407	.	+	.	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
Ledus.S1	AUGUSTUS	stop_codon	34136408	34136410	.	+	0	transcript_id "Ledus.S1G420500.t1"; gene_id "Ledus.S1G420500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11219.t1 is derived from g4837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2789043	2791047	.	+	.	Ledus.S4G037500
Ledus.S4	AUGUSTUS	transcript	2789043	2791047	.	+	.	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	start_codon	2789043	2789045	.	+	0	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	CDS	2789043	2789307	0.9	+	0	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	exon	2789043	2789307	.	+	.	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	intron	2789308	2789384	.	+	.	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	CDS	2789385	2789675	1	+	2	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	exon	2789385	2789675	.	+	.	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	intron	2789676	2789754	.	+	.	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	CDS	2789755	2790400	0.46	+	2	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	exon	2789755	2790400	.	+	.	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	intron	2790401	2790809	.	+	.	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	CDS	2790810	2791047	0.49	+	1	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	exon	2790810	2791047	.	+	.	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
Ledus.S4	AUGUSTUS	stop_codon	2791048	2791050	.	+	0	transcript_id "Ledus.S4G037500.t1"; gene_id "Ledus.S4G037500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8608.t1 is derived from g9638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	564349	565544	.	+	.	Ledus.S3G008500
Ledus.S3	AUGUSTUS	transcript	564349	565544	.	+	.	transcript_id "Ledus.S3G008500.t1"; gene_id "Ledus.S3G008500"
Ledus.S3	AUGUSTUS	start_codon	564349	564351	.	+	0	transcript_id "Ledus.S3G008500.t1"; gene_id "Ledus.S3G008500"
Ledus.S3	AUGUSTUS	CDS	564349	564463	0.64	+	0	transcript_id "Ledus.S3G008500.t1"; gene_id "Ledus.S3G008500"
Ledus.S3	AUGUSTUS	exon	564349	564463	.	+	.	transcript_id "Ledus.S3G008500.t1"; gene_id "Ledus.S3G008500"
Ledus.S3	AUGUSTUS	intron	564464	564621	.	+	.	transcript_id "Ledus.S3G008500.t1"; gene_id "Ledus.S3G008500"
Ledus.S3	AUGUSTUS	CDS	564622	565544	0.67	+	2	transcript_id "Ledus.S3G008500.t1"; gene_id "Ledus.S3G008500"
Ledus.S3	AUGUSTUS	exon	564622	565544	.	+	.	transcript_id "Ledus.S3G008500.t1"; gene_id "Ledus.S3G008500"
Ledus.S3	AUGUSTUS	stop_codon	565545	565547	.	+	0	transcript_id "Ledus.S3G008500.t1"; gene_id "Ledus.S3G008500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7584.t1 is derived from g12255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4193137	4201452	.	-	.	Ledus.S5G036200
Ledus.S5	AUGUSTUS	transcript	4193137	4201452	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	stop_codon	4193134	4193136	.	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4193137	4193306	0.24	-	2	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4193137	4193306	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4193307	4193417	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4193418	4193636	0.62	-	2	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4193418	4193636	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4193637	4193723	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4193724	4194326	0.51	-	2	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4193724	4194326	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4194327	4194558	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4194559	4194725	0.57	-	1	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4194559	4194725	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4194726	4194859	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4194860	4194942	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4194860	4194942	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4194943	4195077	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4195078	4195451	0.94	-	2	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4195078	4195451	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4195452	4195552	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4195553	4195604	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4195553	4195604	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4195605	4195757	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4195758	4195976	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4195758	4195976	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4195977	4196116	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4196117	4196182	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4196117	4196182	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4196183	4196272	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4196273	4196330	1	-	1	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4196273	4196330	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4196331	4196453	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4196454	4196575	0.79	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4196454	4196575	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4196576	4196684	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4196685	4196856	0.83	-	1	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4196685	4196856	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4196857	4197106	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4197107	4197369	0.98	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4197107	4197369	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4197370	4197588	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4197589	4197669	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4197589	4197669	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4197670	4197770	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4197771	4197911	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4197771	4197911	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4197912	4198043	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4198044	4198139	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4198044	4198139	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4198140	4198223	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4198224	4198274	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4198224	4198274	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4198275	4198435	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4198436	4198519	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4198436	4198519	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4198520	4198842	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4198843	4198965	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4198843	4198965	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4198966	4199103	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4199104	4199316	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4199104	4199316	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4199317	4199437	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4199438	4199647	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4199438	4199647	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4199648	4199741	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4199742	4199789	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4199742	4199789	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4199790	4199891	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4199892	4200108	0.58	-	1	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4199892	4200108	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4200109	4200201	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4200202	4200273	1	-	1	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4200202	4200273	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4200274	4200368	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4200369	4200651	1	-	2	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4200369	4200651	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4200652	4200775	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4200776	4201019	1	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4200776	4201019	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4201020	4201221	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4201222	4201452	0.98	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4201222	4201452	.	-	.	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	start_codon	4201450	4201452	.	-	0	transcript_id "Ledus.S5G036200.t1"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	transcript	4193137	4201452	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	stop_codon	4193134	4193136	.	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4193137	4193306	0.23	-	2	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4193137	4193306	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4193307	4193417	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4193418	4193636	0.55	-	2	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4193418	4193636	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4193637	4193723	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4193724	4194326	0.46	-	2	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4193724	4194326	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4194327	4194558	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4194559	4194725	0.52	-	1	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4194559	4194725	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4194726	4194859	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4194860	4194942	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4194860	4194942	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4194943	4195077	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4195078	4195451	0.9	-	2	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4195078	4195451	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4195452	4195552	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4195553	4195604	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4195553	4195604	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4195605	4195757	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4195758	4195976	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4195758	4195976	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4195977	4196116	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4196117	4196182	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4196117	4196182	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4196183	4196272	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4196273	4196330	1	-	1	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4196273	4196330	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4196331	4196453	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4196454	4196575	0.7	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4196454	4196575	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4196576	4196684	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4196685	4196856	0.81	-	1	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4196685	4196856	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4196857	4197106	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4197107	4197369	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4197107	4197369	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4197370	4197588	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4197589	4197669	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4197589	4197669	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4197670	4197770	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4197771	4197911	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4197771	4197911	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4197912	4198043	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4198044	4198139	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4198044	4198139	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4198140	4198223	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4198224	4198274	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4198224	4198274	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4198275	4198435	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4198436	4198519	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4198436	4198519	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4198520	4198842	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4198843	4198965	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4198843	4198965	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4198966	4199103	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4199104	4199316	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4199104	4199316	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4199317	4199400	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4199401	4199544	0.47	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4199401	4199544	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4199545	4199741	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4199742	4199789	0.98	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4199742	4199789	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4199790	4199891	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4199892	4200108	0.66	-	1	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4199892	4200108	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4200109	4200201	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4200202	4200273	1	-	1	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4200202	4200273	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4200274	4200368	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4200369	4200651	0.99	-	2	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4200369	4200651	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4200652	4200775	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4200776	4201019	1	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4200776	4201019	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	intron	4201020	4201221	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	CDS	4201222	4201452	0.97	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	exon	4201222	4201452	.	-	.	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
Ledus.S5	AUGUSTUS	start_codon	4201450	4201452	.	-	0	transcript_id "Ledus.S5G036200.t2"; gene_id "Ledus.S5G036200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9724.t1 is derived from g10754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9422092	9432296	.	+	.	Ledus.S3G120100
Ledus.S3	AUGUSTUS	transcript	9422092	9432296	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	start_codon	9422092	9422094	.	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9422092	9422094	0.9	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9422092	9422094	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9422095	9422294	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9422295	9422928	0.69	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9422295	9422928	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9422929	9423183	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9423184	9423262	1	+	2	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9423184	9423262	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9423263	9423394	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9423395	9423468	1	+	1	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9423395	9423468	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9423469	9423652	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9423653	9423762	1	+	2	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9423653	9423762	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9423763	9423854	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9423855	9423935	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9423855	9423935	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9423936	9424048	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9424049	9424135	0.99	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9424049	9424135	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9424136	9424364	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9424365	9424507	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9424365	9424507	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9424508	9424641	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9424642	9424792	1	+	1	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9424642	9424792	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9424793	9424874	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9424875	9424997	0.91	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9424875	9424997	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9424998	9425134	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9425135	9425218	0.99	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9425135	9425218	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9425219	9425293	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9425294	9425481	0.99	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9425294	9425481	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9425482	9425619	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9425620	9425794	1	+	1	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9425620	9425794	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9425795	9426185	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9426186	9426307	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9426186	9426307	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9426308	9426583	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9426584	9426663	1	+	1	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9426584	9426663	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9426664	9426871	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9426872	9426930	1	+	2	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9426872	9426930	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9426931	9427065	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9427066	9427217	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9427066	9427217	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9427218	9427408	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9427409	9427587	1	+	1	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9427409	9427587	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9427588	9427785	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9427786	9427898	0.96	+	2	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9427786	9427898	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9427899	9428293	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9428294	9428422	0.73	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9428294	9428422	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9428423	9428528	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9428529	9428629	0.96	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9428529	9428629	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9428630	9428750	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9428751	9428868	0.99	+	1	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9428751	9428868	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9428869	9429068	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9429069	9429148	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9429069	9429148	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9429149	9429283	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9429284	9429356	1	+	1	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9429284	9429356	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9429357	9429460	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9429461	9429546	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9429461	9429546	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9429547	9429723	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9429724	9429775	1	+	1	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9429724	9429775	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9429776	9429876	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9429877	9429996	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9429877	9429996	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9429997	9430175	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9430176	9430190	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9430176	9430190	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9430191	9430433	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9430434	9430505	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9430434	9430505	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9430506	9430837	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9430838	9430930	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9430838	9430930	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9430931	9431030	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9431031	9431111	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9431031	9431111	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9431112	9431222	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9431223	9431321	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9431223	9431321	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9431322	9431417	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9431418	9431513	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9431418	9431513	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9431514	9431592	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9431593	9431952	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9431593	9431952	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	intron	9431953	9432140	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	CDS	9432141	9432296	1	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	exon	9432141	9432296	.	+	.	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
Ledus.S3	AUGUSTUS	stop_codon	9432297	9432299	.	+	0	transcript_id "Ledus.S3G120100.t1"; gene_id "Ledus.S3G120100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13140.t1 is derived from g6950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7137288	7137956	.	+	.	Ledus.S6G020200
Ledus.S6	AUGUSTUS	transcript	7137288	7137956	.	+	.	transcript_id "Ledus.S6G020200.t1"; gene_id "Ledus.S6G020200"
Ledus.S6	AUGUSTUS	start_codon	7137288	7137290	.	+	0	transcript_id "Ledus.S6G020200.t1"; gene_id "Ledus.S6G020200"
Ledus.S6	AUGUSTUS	CDS	7137288	7137956	0.73	+	0	transcript_id "Ledus.S6G020200.t1"; gene_id "Ledus.S6G020200"
Ledus.S6	AUGUSTUS	exon	7137288	7137956	.	+	.	transcript_id "Ledus.S6G020200.t1"; gene_id "Ledus.S6G020200"
Ledus.S6	AUGUSTUS	stop_codon	7137957	7137959	.	+	0	transcript_id "Ledus.S6G020200.t1"; gene_id "Ledus.S6G020200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10820.t1 is derived from g11852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18035614	18035922	.	+	.	Ledus.S3G229700
Ledus.S3	AUGUSTUS	transcript	18035614	18035922	.	+	.	transcript_id "Ledus.S3G229700.t1"; gene_id "Ledus.S3G229700"
Ledus.S3	AUGUSTUS	start_codon	18035614	18035616	.	+	0	transcript_id "Ledus.S3G229700.t1"; gene_id "Ledus.S3G229700"
Ledus.S3	AUGUSTUS	CDS	18035614	18035922	0.67	+	0	transcript_id "Ledus.S3G229700.t1"; gene_id "Ledus.S3G229700"
Ledus.S3	AUGUSTUS	exon	18035614	18035922	.	+	.	transcript_id "Ledus.S3G229700.t1"; gene_id "Ledus.S3G229700"
Ledus.S3	AUGUSTUS	stop_codon	18035923	18035925	.	+	0	transcript_id "Ledus.S3G229700.t1"; gene_id "Ledus.S3G229700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1893.t1 is derived from g8756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13203635	13205483	.	-	.	Ledus.S2G177500
Ledus.S2	AUGUSTUS	transcript	13203635	13205483	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	stop_codon	13203632	13203634	.	-	0	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	CDS	13203635	13203745	0.7	-	0	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	exon	13203635	13203745	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	intron	13203746	13203823	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	CDS	13203824	13203943	1	-	0	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	exon	13203824	13203943	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	intron	13203944	13204028	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	CDS	13204029	13204172	1	-	0	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	exon	13204029	13204172	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	intron	13204173	13204276	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	CDS	13204277	13204328	0.88	-	1	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	exon	13204277	13204328	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	intron	13204329	13204435	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	CDS	13204436	13204476	0.55	-	0	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	exon	13204436	13204476	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	intron	13204477	13204569	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	CDS	13204570	13204746	0.72	-	0	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	exon	13204570	13204746	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	intron	13204747	13204967	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	CDS	13204968	13205010	1	-	1	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	exon	13204968	13205010	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	intron	13205011	13205107	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	CDS	13205108	13205193	1	-	0	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	exon	13205108	13205193	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	intron	13205194	13205435	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	CDS	13205436	13205483	1	-	0	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	exon	13205436	13205483	.	-	.	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
Ledus.S2	AUGUSTUS	start_codon	13205481	13205483	.	-	0	transcript_id "Ledus.S2G177500.t1"; gene_id "Ledus.S2G177500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9923.t1 is derived from g10953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11231366	11232091	.	-	.	Ledus.S3G140000
Ledus.S3	AUGUSTUS	transcript	11231366	11232091	.	-	.	transcript_id "Ledus.S3G140000.t1"; gene_id "Ledus.S3G140000"
Ledus.S3	AUGUSTUS	stop_codon	11231363	11231365	.	-	0	transcript_id "Ledus.S3G140000.t1"; gene_id "Ledus.S3G140000"
Ledus.S3	AUGUSTUS	CDS	11231366	11232091	0.64	-	0	transcript_id "Ledus.S3G140000.t1"; gene_id "Ledus.S3G140000"
Ledus.S3	AUGUSTUS	exon	11231366	11232091	.	-	.	transcript_id "Ledus.S3G140000.t1"; gene_id "Ledus.S3G140000"
Ledus.S3	AUGUSTUS	start_codon	11232089	11232091	.	-	0	transcript_id "Ledus.S3G140000.t1"; gene_id "Ledus.S3G140000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10715.t1 is derived from g11745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17340856	17342450	.	-	.	Ledus.S3G219200
Ledus.S3	AUGUSTUS	transcript	17340856	17342450	.	-	.	transcript_id "Ledus.S3G219200.t1"; gene_id "Ledus.S3G219200"
Ledus.S3	AUGUSTUS	stop_codon	17340853	17340855	.	-	0	transcript_id "Ledus.S3G219200.t1"; gene_id "Ledus.S3G219200"
Ledus.S3	AUGUSTUS	CDS	17340856	17341181	0.86	-	2	transcript_id "Ledus.S3G219200.t1"; gene_id "Ledus.S3G219200"
Ledus.S3	AUGUSTUS	exon	17340856	17341181	.	-	.	transcript_id "Ledus.S3G219200.t1"; gene_id "Ledus.S3G219200"
Ledus.S3	AUGUSTUS	intron	17341182	17341291	.	-	.	transcript_id "Ledus.S3G219200.t1"; gene_id "Ledus.S3G219200"
Ledus.S3	AUGUSTUS	CDS	17341292	17342450	0.43	-	0	transcript_id "Ledus.S3G219200.t1"; gene_id "Ledus.S3G219200"
Ledus.S3	AUGUSTUS	exon	17341292	17342450	.	-	.	transcript_id "Ledus.S3G219200.t1"; gene_id "Ledus.S3G219200"
Ledus.S3	AUGUSTUS	start_codon	17342448	17342450	.	-	0	transcript_id "Ledus.S3G219200.t1"; gene_id "Ledus.S3G219200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3785.t1 is derived from g1221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12117198	12117620	.	+	.	Ledus.S1G120600
Ledus.S1	AUGUSTUS	transcript	12117198	12117620	.	+	.	transcript_id "Ledus.S1G120600.t1"; gene_id "Ledus.S1G120600"
Ledus.S1	AUGUSTUS	start_codon	12117198	12117200	.	+	0	transcript_id "Ledus.S1G120600.t1"; gene_id "Ledus.S1G120600"
Ledus.S1	AUGUSTUS	CDS	12117198	12117620	0.51	+	0	transcript_id "Ledus.S1G120600.t1"; gene_id "Ledus.S1G120600"
Ledus.S1	AUGUSTUS	exon	12117198	12117620	.	+	.	transcript_id "Ledus.S1G120600.t1"; gene_id "Ledus.S1G120600"
Ledus.S1	AUGUSTUS	stop_codon	12117621	12117623	.	+	0	transcript_id "Ledus.S1G120600.t1"; gene_id "Ledus.S1G120600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4904.t1 is derived from g2342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20592237	20592863	.	-	.	Ledus.S1G232500
Ledus.S1	AUGUSTUS	transcript	20592237	20592863	.	-	.	transcript_id "Ledus.S1G232500.t1"; gene_id "Ledus.S1G232500"
Ledus.S1	AUGUSTUS	stop_codon	20592234	20592236	.	-	0	transcript_id "Ledus.S1G232500.t1"; gene_id "Ledus.S1G232500"
Ledus.S1	AUGUSTUS	CDS	20592237	20592863	0.88	-	0	transcript_id "Ledus.S1G232500.t1"; gene_id "Ledus.S1G232500"
Ledus.S1	AUGUSTUS	exon	20592237	20592863	.	-	.	transcript_id "Ledus.S1G232500.t1"; gene_id "Ledus.S1G232500"
Ledus.S1	AUGUSTUS	start_codon	20592861	20592863	.	-	0	transcript_id "Ledus.S1G232500.t1"; gene_id "Ledus.S1G232500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg561.t1 is derived from g7422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3357438	3357918	.	+	.	Ledus.S2G044300
Ledus.S2	AUGUSTUS	transcript	3357438	3357918	.	+	.	transcript_id "Ledus.S2G044300.t1"; gene_id "Ledus.S2G044300"
Ledus.S2	AUGUSTUS	start_codon	3357438	3357440	.	+	0	transcript_id "Ledus.S2G044300.t1"; gene_id "Ledus.S2G044300"
Ledus.S2	AUGUSTUS	CDS	3357438	3357516	0.42	+	0	transcript_id "Ledus.S2G044300.t1"; gene_id "Ledus.S2G044300"
Ledus.S2	AUGUSTUS	exon	3357438	3357516	.	+	.	transcript_id "Ledus.S2G044300.t1"; gene_id "Ledus.S2G044300"
Ledus.S2	AUGUSTUS	intron	3357517	3357691	.	+	.	transcript_id "Ledus.S2G044300.t1"; gene_id "Ledus.S2G044300"
Ledus.S2	AUGUSTUS	CDS	3357692	3357918	0.34	+	2	transcript_id "Ledus.S2G044300.t1"; gene_id "Ledus.S2G044300"
Ledus.S2	AUGUSTUS	exon	3357692	3357918	.	+	.	transcript_id "Ledus.S2G044300.t1"; gene_id "Ledus.S2G044300"
Ledus.S2	AUGUSTUS	stop_codon	3357919	3357921	.	+	0	transcript_id "Ledus.S2G044300.t1"; gene_id "Ledus.S2G044300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11925.t1 is derived from g5544.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7831977	7835741	.	+	.	Ledus.S4G108100
Ledus.S4	AUGUSTUS	transcript	7831977	7835741	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	start_codon	7831977	7831979	.	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7831977	7832222	0.85	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7831977	7832222	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7832223	7832310	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7832311	7832428	1	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7832311	7832428	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7832429	7832509	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7832510	7832685	1	+	2	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7832510	7832685	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7832686	7832824	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7832825	7832932	0.97	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7832825	7832932	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7832933	7833035	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7833036	7833100	1	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7833036	7833100	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7833101	7833307	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7833308	7833413	1	+	1	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7833308	7833413	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7833414	7833509	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7833510	7833593	1	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7833510	7833593	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7833594	7833686	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7833687	7833833	1	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7833687	7833833	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7833834	7833972	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7833973	7834101	1	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7833973	7834101	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7834102	7834192	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7834193	7834260	1	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7834193	7834260	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7834261	7834350	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7834351	7834384	1	+	1	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7834351	7834384	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7834385	7834511	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7834512	7834596	1	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7834512	7834596	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7834597	7834681	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7834682	7834749	0.98	+	2	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7834682	7834749	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7834750	7834863	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7834864	7834977	0.98	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7834864	7834977	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7834978	7835109	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7835110	7835145	1	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7835110	7835145	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7835146	7835224	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7835225	7835311	1	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7835225	7835311	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7835312	7835464	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7835465	7835556	1	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7835465	7835556	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	intron	7835557	7835650	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	CDS	7835651	7835741	0.98	+	1	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	exon	7835651	7835741	.	+	.	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
Ledus.S4	AUGUSTUS	stop_codon	7835742	7835744	.	+	0	transcript_id "Ledus.S4G108100.t1"; gene_id "Ledus.S4G108100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7793.t1 is derived from g12464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6790359	6801126	.	+	.	Ledus.S5G057100
Ledus.S5	AUGUSTUS	transcript	6790359	6801126	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	start_codon	6790359	6790361	.	+	0	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6790359	6790451	0.77	+	0	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6790359	6790451	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6790452	6790507	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6790508	6790515	1	+	0	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6790508	6790515	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6790516	6790645	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6790646	6791572	0.55	+	1	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6790646	6791572	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6791573	6791646	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6791647	6792949	0.88	+	1	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6791647	6792949	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6792950	6793172	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6793173	6793395	1	+	0	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6793173	6793395	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6793396	6793634	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6793635	6794299	1	+	2	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6793635	6794299	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6794300	6794445	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6794446	6795066	0.96	+	0	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6794446	6795066	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6795067	6795180	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6795181	6795525	0.9	+	0	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6795181	6795525	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6795526	6795703	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6795704	6796036	0.8	+	0	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6795704	6796036	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6796037	6796142	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6796143	6796241	1	+	0	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6796143	6796241	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6796242	6796445	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6796446	6796967	0.96	+	0	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6796446	6796967	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6796968	6797078	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6797079	6800753	0.95	+	0	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6797079	6800753	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6800754	6800886	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6800887	6801126	0.97	+	0	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6800887	6801126	.	+	.	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	stop_codon	6801127	6801129	.	+	0	transcript_id "Ledus.S5G057100.t1"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	transcript	6790359	6801126	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	start_codon	6790359	6790361	.	+	0	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6790359	6790451	0.8	+	0	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6790359	6790451	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6790452	6790507	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6790508	6790515	1	+	0	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6790508	6790515	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6790516	6790645	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6790646	6791572	0.53	+	1	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6790646	6791572	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6791573	6791646	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6791647	6792949	0.88	+	1	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6791647	6792949	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6792950	6793172	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6793173	6793395	0.99	+	0	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6793173	6793395	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6793396	6793634	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6793635	6794299	1	+	2	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6793635	6794299	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6794300	6794445	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6794446	6795066	0.9	+	0	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6794446	6795066	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6795067	6795180	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6795181	6795442	0.53	+	0	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6795181	6795442	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6795443	6795525	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6795526	6795551	0.66	+	2	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6795526	6795551	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6795552	6795703	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6795704	6796036	0.85	+	0	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6795704	6796036	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6796037	6796142	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6796143	6796241	1	+	0	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6796143	6796241	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6796242	6796445	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6796446	6796967	0.94	+	0	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6796446	6796967	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6796968	6797078	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6797079	6800753	0.88	+	0	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6797079	6800753	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	intron	6800754	6800886	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	CDS	6800887	6801126	0.95	+	0	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	exon	6800887	6801126	.	+	.	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
Ledus.S5	AUGUSTUS	stop_codon	6801127	6801129	.	+	0	transcript_id "Ledus.S5G057100.t2"; gene_id "Ledus.S5G057100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7337.t1 is derived from g12008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1254665	1256685	.	-	.	Ledus.S5G011500
Ledus.S5	AUGUSTUS	transcript	1254665	1256685	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	stop_codon	1254662	1254664	.	-	0	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	CDS	1254665	1254763	0.93	-	0	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	exon	1254665	1254763	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	intron	1254764	1254926	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	CDS	1254927	1255052	1	-	0	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	exon	1254927	1255052	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	intron	1255053	1255146	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	CDS	1255147	1255331	1	-	2	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	exon	1255147	1255331	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	intron	1255332	1255465	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	CDS	1255466	1255565	1	-	0	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	exon	1255466	1255565	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	intron	1255566	1255696	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	CDS	1255697	1255904	1	-	1	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	exon	1255697	1255904	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	intron	1255905	1256077	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	CDS	1256078	1256163	1	-	0	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	exon	1256078	1256163	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	intron	1256164	1256478	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	CDS	1256479	1256685	0.99	-	0	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	exon	1256479	1256685	.	-	.	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
Ledus.S5	AUGUSTUS	start_codon	1256683	1256685	.	-	0	transcript_id "Ledus.S5G011500.t1"; gene_id "Ledus.S5G011500"
# This transcript jg12323.t2 is derived from g5944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12324.t1 is derived from g5945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11208795	11210658	.	+	.	Ledus.S4G148000
Ledus.S4	AUGUSTUS	transcript	11208795	11210658	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	start_codon	11208795	11208797	.	+	0	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	CDS	11208795	11208880	0.78	+	0	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	exon	11208795	11208880	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	intron	11208881	11208989	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	CDS	11208990	11209169	0.8	+	1	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	exon	11208990	11209169	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	intron	11209170	11209256	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	CDS	11209257	11209291	1	+	1	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	exon	11209257	11209291	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	intron	11209292	11209375	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	CDS	11209376	11209469	1	+	2	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	exon	11209376	11209469	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	intron	11209470	11209546	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	CDS	11209547	11209607	1	+	1	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	exon	11209547	11209607	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	intron	11209608	11209689	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	CDS	11209690	11209735	1	+	0	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	exon	11209690	11209735	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	intron	11209736	11209833	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	CDS	11209834	11209904	1	+	2	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	exon	11209834	11209904	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	intron	11209905	11209999	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	CDS	11210000	11210073	0.96	+	0	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	exon	11210000	11210073	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	intron	11210074	11210338	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	CDS	11210339	11210380	0.97	+	1	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	exon	11210339	11210380	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	intron	11210381	11210561	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	CDS	11210562	11210658	1	+	1	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	exon	11210562	11210658	.	+	.	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
Ledus.S4	AUGUSTUS	stop_codon	11210659	11210661	.	+	0	transcript_id "Ledus.S4G148000.t1"; gene_id "Ledus.S4G148000"
# This transcript jg626.t2 is derived from g7487.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg627.t1 is derived from g7488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3774199	3775313	.	-	.	Ledus.S2G050900
Ledus.S2	AUGUSTUS	transcript	3774199	3775313	.	-	.	transcript_id "Ledus.S2G050900.t1"; gene_id "Ledus.S2G050900"
Ledus.S2	AUGUSTUS	stop_codon	3774196	3774198	.	-	0	transcript_id "Ledus.S2G050900.t1"; gene_id "Ledus.S2G050900"
Ledus.S2	AUGUSTUS	CDS	3774199	3774470	1	-	2	transcript_id "Ledus.S2G050900.t1"; gene_id "Ledus.S2G050900"
Ledus.S2	AUGUSTUS	exon	3774199	3774470	.	-	.	transcript_id "Ledus.S2G050900.t1"; gene_id "Ledus.S2G050900"
Ledus.S2	AUGUSTUS	intron	3774471	3774559	.	-	.	transcript_id "Ledus.S2G050900.t1"; gene_id "Ledus.S2G050900"
Ledus.S2	AUGUSTUS	CDS	3774560	3775313	0.88	-	0	transcript_id "Ledus.S2G050900.t1"; gene_id "Ledus.S2G050900"
Ledus.S2	AUGUSTUS	exon	3774560	3775313	.	-	.	transcript_id "Ledus.S2G050900.t1"; gene_id "Ledus.S2G050900"
Ledus.S2	AUGUSTUS	start_codon	3775311	3775313	.	-	0	transcript_id "Ledus.S2G050900.t1"; gene_id "Ledus.S2G050900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1096.t1 is derived from g7957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7503417	7504195	.	-	.	Ledus.S2G097800
Ledus.S2	AUGUSTUS	transcript	7503417	7504195	.	-	.	transcript_id "Ledus.S2G097800.t1"; gene_id "Ledus.S2G097800"
Ledus.S2	AUGUSTUS	stop_codon	7503414	7503416	.	-	0	transcript_id "Ledus.S2G097800.t1"; gene_id "Ledus.S2G097800"
Ledus.S2	AUGUSTUS	CDS	7503417	7503928	0.39	-	2	transcript_id "Ledus.S2G097800.t1"; gene_id "Ledus.S2G097800"
Ledus.S2	AUGUSTUS	exon	7503417	7503928	.	-	.	transcript_id "Ledus.S2G097800.t1"; gene_id "Ledus.S2G097800"
Ledus.S2	AUGUSTUS	intron	7503929	7504113	.	-	.	transcript_id "Ledus.S2G097800.t1"; gene_id "Ledus.S2G097800"
Ledus.S2	AUGUSTUS	CDS	7504114	7504195	0.23	-	0	transcript_id "Ledus.S2G097800.t1"; gene_id "Ledus.S2G097800"
Ledus.S2	AUGUSTUS	exon	7504114	7504195	.	-	.	transcript_id "Ledus.S2G097800.t1"; gene_id "Ledus.S2G097800"
Ledus.S2	AUGUSTUS	start_codon	7504193	7504195	.	-	0	transcript_id "Ledus.S2G097800.t1"; gene_id "Ledus.S2G097800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2480.t1 is derived from g9343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18383599	18384992	.	+	.	Ledus.S2G236200
Ledus.S2	AUGUSTUS	transcript	18383599	18384992	.	+	.	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	start_codon	18383599	18383601	.	+	0	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	CDS	18383599	18383902	1	+	0	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	exon	18383599	18383902	.	+	.	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	intron	18383903	18383973	.	+	.	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	CDS	18383974	18384044	1	+	2	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	exon	18383974	18384044	.	+	.	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	intron	18384045	18384232	.	+	.	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	CDS	18384233	18384319	1	+	0	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	exon	18384233	18384319	.	+	.	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	intron	18384320	18384466	.	+	.	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	CDS	18384467	18384616	1	+	0	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	exon	18384467	18384616	.	+	.	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	intron	18384617	18384789	.	+	.	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	CDS	18384790	18384849	1	+	0	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	exon	18384790	18384849	.	+	.	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	intron	18384850	18384941	.	+	.	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	CDS	18384942	18384992	1	+	0	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	exon	18384942	18384992	.	+	.	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
Ledus.S2	AUGUSTUS	stop_codon	18384993	18384995	.	+	0	transcript_id "Ledus.S2G236200.t1"; gene_id "Ledus.S2G236200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8983.t1 is derived from g10013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3670343	3672872	.	-	.	Ledus.S3G046000
Ledus.S3	AUGUSTUS	transcript	3670343	3672872	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	stop_codon	3670340	3670342	.	-	0	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	CDS	3670343	3670450	0.92	-	0	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	exon	3670343	3670450	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	intron	3670451	3670526	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	CDS	3670527	3670744	0.96	-	2	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	exon	3670527	3670744	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	intron	3670745	3670869	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	CDS	3670870	3671013	1	-	2	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	exon	3670870	3671013	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	intron	3671014	3671108	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	CDS	3671109	3671205	0.82	-	0	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	exon	3671109	3671205	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	intron	3671206	3671347	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	CDS	3671348	3671442	0.97	-	2	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	exon	3671348	3671442	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	intron	3671443	3671522	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	CDS	3671523	3671614	0.97	-	1	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	exon	3671523	3671614	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	intron	3671615	3671751	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	CDS	3671752	3671897	0.99	-	0	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	exon	3671752	3671897	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	intron	3671898	3672052	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	CDS	3672053	3672152	0.98	-	1	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	exon	3672053	3672152	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	intron	3672153	3672299	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	CDS	3672300	3672404	1	-	1	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	exon	3672300	3672404	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	intron	3672405	3672492	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	CDS	3672493	3672523	1	-	2	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	exon	3672493	3672523	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	intron	3672524	3672745	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	CDS	3672746	3672872	0.98	-	0	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	exon	3672746	3672872	.	-	.	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
Ledus.S3	AUGUSTUS	start_codon	3672870	3672872	.	-	0	transcript_id "Ledus.S3G046000.t1"; gene_id "Ledus.S3G046000"
# This transcript jg5410.t2 is derived from g2849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5411.t1 is derived from g2850.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24027249	24030302	.	+	.	Ledus.S1G283200
Ledus.S1	AUGUSTUS	transcript	24027249	24030302	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	start_codon	24027249	24027251	.	+	0	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	CDS	24027249	24027264	0.69	+	0	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	exon	24027249	24027264	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	intron	24027265	24027362	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	CDS	24027363	24027411	0.69	+	2	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	exon	24027363	24027411	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	intron	24027412	24027566	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	CDS	24027567	24027698	0.69	+	1	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	exon	24027567	24027698	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	intron	24027699	24027792	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	CDS	24027793	24027910	1	+	1	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	exon	24027793	24027910	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	intron	24027911	24028544	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	CDS	24028545	24028687	1	+	0	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	exon	24028545	24028687	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	intron	24028688	24028835	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	CDS	24028836	24028925	0.96	+	1	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	exon	24028836	24028925	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	intron	24028926	24029031	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	CDS	24029032	24029091	0.64	+	1	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	exon	24029032	24029091	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	intron	24029092	24029275	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	CDS	24029276	24029378	0.84	+	1	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	exon	24029276	24029378	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	intron	24029379	24029531	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	CDS	24029532	24029597	1	+	0	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	exon	24029532	24029597	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	intron	24029598	24029756	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	CDS	24029757	24030302	0.79	+	0	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	exon	24029757	24030302	.	+	.	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
Ledus.S1	AUGUSTUS	stop_codon	24030303	24030305	.	+	0	transcript_id "Ledus.S1G283200.t1"; gene_id "Ledus.S1G283200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg308.t1 is derived from g7169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1544815	1546327	.	+	.	Ledus.S2G019000
Ledus.S2	AUGUSTUS	transcript	1544815	1546327	.	+	.	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	start_codon	1544815	1544817	.	+	0	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	CDS	1544815	1545487	0.81	+	0	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	exon	1544815	1545487	.	+	.	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	intron	1545488	1545597	.	+	.	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	CDS	1545598	1545667	1	+	2	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	exon	1545598	1545667	.	+	.	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	intron	1545668	1545778	.	+	.	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	CDS	1545779	1545800	1	+	1	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	exon	1545779	1545800	.	+	.	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	intron	1545801	1545928	.	+	.	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	CDS	1545929	1546065	0.26	+	0	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	exon	1545929	1546065	.	+	.	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	intron	1546066	1546260	.	+	.	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	CDS	1546261	1546327	0.51	+	1	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	exon	1546261	1546327	.	+	.	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
Ledus.S2	AUGUSTUS	stop_codon	1546328	1546330	.	+	0	transcript_id "Ledus.S2G019000.t1"; gene_id "Ledus.S2G019000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1964.t1 is derived from g8827.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13844248	13846053	.	-	.	Ledus.S2G184600
Ledus.S2	AUGUSTUS	transcript	13844248	13846053	.	-	.	transcript_id "Ledus.S2G184600.t1"; gene_id "Ledus.S2G184600"
Ledus.S2	AUGUSTUS	stop_codon	13844245	13844247	.	-	0	transcript_id "Ledus.S2G184600.t1"; gene_id "Ledus.S2G184600"
Ledus.S2	AUGUSTUS	CDS	13844248	13846053	1	-	0	transcript_id "Ledus.S2G184600.t1"; gene_id "Ledus.S2G184600"
Ledus.S2	AUGUSTUS	exon	13844248	13846053	.	-	.	transcript_id "Ledus.S2G184600.t1"; gene_id "Ledus.S2G184600"
Ledus.S2	AUGUSTUS	start_codon	13846051	13846053	.	-	0	transcript_id "Ledus.S2G184600.t1"; gene_id "Ledus.S2G184600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2182.t1 is derived from g9045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15789539	15793587	.	-	.	Ledus.S2G206400
Ledus.S2	AUGUSTUS	transcript	15789539	15793587	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	stop_codon	15789536	15789538	.	-	0	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15789539	15789604	0.42	-	0	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15789539	15789604	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15789605	15789848	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15789849	15789915	0.59	-	1	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15789849	15789915	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15789916	15789992	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15789993	15790045	1	-	0	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15789993	15790045	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15790046	15790129	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15790130	15790200	1	-	2	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15790130	15790200	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15790201	15790288	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15790289	15790419	1	-	1	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15790289	15790419	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15790420	15790584	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15790585	15790646	1	-	0	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15790585	15790646	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15790647	15790730	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15790731	15790823	0.99	-	0	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15790731	15790823	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15790824	15790924	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15790925	15791036	0.98	-	1	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15790925	15791036	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15791037	15791130	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15791131	15791234	1	-	0	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15791131	15791234	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15791235	15791321	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15791322	15791445	1	-	1	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15791322	15791445	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15791446	15791575	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15791576	15792756	0.95	-	0	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15791576	15792756	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15792757	15793207	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15793208	15793229	0.79	-	1	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15793208	15793229	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15793230	15793317	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15793318	15793465	1	-	2	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15793318	15793465	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	intron	15793466	15793550	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	CDS	15793551	15793587	0.99	-	0	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	exon	15793551	15793587	.	-	.	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
Ledus.S2	AUGUSTUS	start_codon	15793585	15793587	.	-	0	transcript_id "Ledus.S2G206400.t1"; gene_id "Ledus.S2G206400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2408.t1 is derived from g9271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17977230	17977768	.	+	.	Ledus.S2G229000
Ledus.S2	AUGUSTUS	transcript	17977230	17977768	.	+	.	transcript_id "Ledus.S2G229000.t1"; gene_id "Ledus.S2G229000"
Ledus.S2	AUGUSTUS	start_codon	17977230	17977232	.	+	0	transcript_id "Ledus.S2G229000.t1"; gene_id "Ledus.S2G229000"
Ledus.S2	AUGUSTUS	CDS	17977230	17977301	1	+	0	transcript_id "Ledus.S2G229000.t1"; gene_id "Ledus.S2G229000"
Ledus.S2	AUGUSTUS	exon	17977230	17977301	.	+	.	transcript_id "Ledus.S2G229000.t1"; gene_id "Ledus.S2G229000"
Ledus.S2	AUGUSTUS	intron	17977302	17977388	.	+	.	transcript_id "Ledus.S2G229000.t1"; gene_id "Ledus.S2G229000"
Ledus.S2	AUGUSTUS	CDS	17977389	17977505	1	+	0	transcript_id "Ledus.S2G229000.t1"; gene_id "Ledus.S2G229000"
Ledus.S2	AUGUSTUS	exon	17977389	17977505	.	+	.	transcript_id "Ledus.S2G229000.t1"; gene_id "Ledus.S2G229000"
Ledus.S2	AUGUSTUS	intron	17977506	17977579	.	+	.	transcript_id "Ledus.S2G229000.t1"; gene_id "Ledus.S2G229000"
Ledus.S2	AUGUSTUS	CDS	17977580	17977768	1	+	0	transcript_id "Ledus.S2G229000.t1"; gene_id "Ledus.S2G229000"
Ledus.S2	AUGUSTUS	exon	17977580	17977768	.	+	.	transcript_id "Ledus.S2G229000.t1"; gene_id "Ledus.S2G229000"
Ledus.S2	AUGUSTUS	stop_codon	17977769	17977771	.	+	0	transcript_id "Ledus.S2G229000.t1"; gene_id "Ledus.S2G229000"
# This transcript jg8037.t2 is derived from g12708.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8037.t3 is derived from g12708.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8038.t1 is derived from g12709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8748898	8750168	.	+	.	Ledus.S5G081600
Ledus.S5	AUGUSTUS	transcript	8748898	8750168	.	+	.	transcript_id "Ledus.S5G081600.t1"; gene_id "Ledus.S5G081600"
Ledus.S5	AUGUSTUS	start_codon	8748898	8748900	.	+	0	transcript_id "Ledus.S5G081600.t1"; gene_id "Ledus.S5G081600"
Ledus.S5	AUGUSTUS	CDS	8748898	8749317	0.39	+	0	transcript_id "Ledus.S5G081600.t1"; gene_id "Ledus.S5G081600"
Ledus.S5	AUGUSTUS	exon	8748898	8749317	.	+	.	transcript_id "Ledus.S5G081600.t1"; gene_id "Ledus.S5G081600"
Ledus.S5	AUGUSTUS	intron	8749318	8749892	.	+	.	transcript_id "Ledus.S5G081600.t1"; gene_id "Ledus.S5G081600"
Ledus.S5	AUGUSTUS	CDS	8749893	8749934	0.85	+	0	transcript_id "Ledus.S5G081600.t1"; gene_id "Ledus.S5G081600"
Ledus.S5	AUGUSTUS	exon	8749893	8749934	.	+	.	transcript_id "Ledus.S5G081600.t1"; gene_id "Ledus.S5G081600"
Ledus.S5	AUGUSTUS	intron	8749935	8750072	.	+	.	transcript_id "Ledus.S5G081600.t1"; gene_id "Ledus.S5G081600"
Ledus.S5	AUGUSTUS	CDS	8750073	8750168	0.99	+	0	transcript_id "Ledus.S5G081600.t1"; gene_id "Ledus.S5G081600"
Ledus.S5	AUGUSTUS	exon	8750073	8750168	.	+	.	transcript_id "Ledus.S5G081600.t1"; gene_id "Ledus.S5G081600"
Ledus.S5	AUGUSTUS	stop_codon	8750169	8750171	.	+	0	transcript_id "Ledus.S5G081600.t1"; gene_id "Ledus.S5G081600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6459.t1 is derived from g3902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31362831	31363312	.	+	.	Ledus.S1G388000
Ledus.S1	AUGUSTUS	transcript	31362831	31363312	.	+	.	transcript_id "Ledus.S1G388000.t1"; gene_id "Ledus.S1G388000"
Ledus.S1	AUGUSTUS	start_codon	31362831	31362833	.	+	0	transcript_id "Ledus.S1G388000.t1"; gene_id "Ledus.S1G388000"
Ledus.S1	AUGUSTUS	CDS	31362831	31363048	0.92	+	0	transcript_id "Ledus.S1G388000.t1"; gene_id "Ledus.S1G388000"
Ledus.S1	AUGUSTUS	exon	31362831	31363048	.	+	.	transcript_id "Ledus.S1G388000.t1"; gene_id "Ledus.S1G388000"
Ledus.S1	AUGUSTUS	intron	31363049	31363152	.	+	.	transcript_id "Ledus.S1G388000.t1"; gene_id "Ledus.S1G388000"
Ledus.S1	AUGUSTUS	CDS	31363153	31363312	0.97	+	1	transcript_id "Ledus.S1G388000.t1"; gene_id "Ledus.S1G388000"
Ledus.S1	AUGUSTUS	exon	31363153	31363312	.	+	.	transcript_id "Ledus.S1G388000.t1"; gene_id "Ledus.S1G388000"
Ledus.S1	AUGUSTUS	stop_codon	31363313	31363315	.	+	0	transcript_id "Ledus.S1G388000.t1"; gene_id "Ledus.S1G388000"
# This transcript jg11828.t2 is derived from g5447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11829.t1 is derived from g5448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7117156	7118959	.	-	.	Ledus.S4G098500
Ledus.S4	AUGUSTUS	transcript	7117156	7118959	.	-	.	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	stop_codon	7117153	7117155	.	-	0	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	CDS	7117156	7117438	0.62	-	1	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	exon	7117156	7117438	.	-	.	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	intron	7117439	7117555	.	-	.	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	CDS	7117556	7117761	1	-	0	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	exon	7117556	7117761	.	-	.	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	intron	7117762	7117841	.	-	.	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	CDS	7117842	7118132	1	-	0	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	exon	7117842	7118132	.	-	.	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	intron	7118133	7118359	.	-	.	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	CDS	7118360	7118586	1	-	2	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	exon	7118360	7118586	.	-	.	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	intron	7118587	7118814	.	-	.	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	CDS	7118815	7118959	0.73	-	0	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	exon	7118815	7118959	.	-	.	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
Ledus.S4	AUGUSTUS	start_codon	7118957	7118959	.	-	0	transcript_id "Ledus.S4G098500.t1"; gene_id "Ledus.S4G098500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4892.t1 is derived from g2330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20559360	20560139	.	+	.	Ledus.S1G231300
Ledus.S1	AUGUSTUS	transcript	20559360	20560139	.	+	.	transcript_id "Ledus.S1G231300.t1"; gene_id "Ledus.S1G231300"
Ledus.S1	AUGUSTUS	start_codon	20559360	20559362	.	+	0	transcript_id "Ledus.S1G231300.t1"; gene_id "Ledus.S1G231300"
Ledus.S1	AUGUSTUS	CDS	20559360	20559516	0.7	+	0	transcript_id "Ledus.S1G231300.t1"; gene_id "Ledus.S1G231300"
Ledus.S1	AUGUSTUS	exon	20559360	20559516	.	+	.	transcript_id "Ledus.S1G231300.t1"; gene_id "Ledus.S1G231300"
Ledus.S1	AUGUSTUS	intron	20559517	20559810	.	+	.	transcript_id "Ledus.S1G231300.t1"; gene_id "Ledus.S1G231300"
Ledus.S1	AUGUSTUS	CDS	20559811	20560139	0.78	+	2	transcript_id "Ledus.S1G231300.t1"; gene_id "Ledus.S1G231300"
Ledus.S1	AUGUSTUS	exon	20559811	20560139	.	+	.	transcript_id "Ledus.S1G231300.t1"; gene_id "Ledus.S1G231300"
Ledus.S1	AUGUSTUS	stop_codon	20560140	20560142	.	+	0	transcript_id "Ledus.S1G231300.t1"; gene_id "Ledus.S1G231300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg838.t1 is derived from g7699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5613064	5613366	.	+	.	Ledus.S2G072000
Ledus.S2	AUGUSTUS	transcript	5613064	5613366	.	+	.	transcript_id "Ledus.S2G072000.t1"; gene_id "Ledus.S2G072000"
Ledus.S2	AUGUSTUS	start_codon	5613064	5613066	.	+	0	transcript_id "Ledus.S2G072000.t1"; gene_id "Ledus.S2G072000"
Ledus.S2	AUGUSTUS	CDS	5613064	5613366	0.81	+	0	transcript_id "Ledus.S2G072000.t1"; gene_id "Ledus.S2G072000"
Ledus.S2	AUGUSTUS	exon	5613064	5613366	.	+	.	transcript_id "Ledus.S2G072000.t1"; gene_id "Ledus.S2G072000"
Ledus.S2	AUGUSTUS	stop_codon	5613367	5613369	.	+	0	transcript_id "Ledus.S2G072000.t1"; gene_id "Ledus.S2G072000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg295.t1 is derived from g7156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1460629	1465902	.	+	.	Ledus.S2G017700
Ledus.S2	AUGUSTUS	transcript	1460629	1465902	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	start_codon	1460629	1460631	.	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1460629	1461016	0.65	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1460629	1461016	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1461017	1461115	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1461116	1461234	1	+	2	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1461116	1461234	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1461235	1461325	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1461326	1461490	0.98	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1461326	1461490	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1461491	1461620	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1461621	1461692	0.28	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1461621	1461692	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1461693	1461794	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1461795	1461845	0.58	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1461795	1461845	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1461846	1461975	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1461976	1462077	0.53	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1461976	1462077	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1462078	1462158	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1462159	1462221	0.53	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1462159	1462221	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1462222	1462394	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1462395	1462433	0.77	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1462395	1462433	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1462434	1462525	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1462526	1462630	0.73	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1462526	1462630	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1462631	1462724	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1462725	1462781	0.75	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1462725	1462781	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1462782	1462905	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1462906	1462959	0.68	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1462906	1462959	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1462960	1463054	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1463055	1463117	0.9	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1463055	1463117	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1463118	1463610	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1463611	1463667	0.61	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1463611	1463667	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1463668	1463753	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1463754	1463810	0.99	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1463754	1463810	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1463811	1463886	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1463887	1464035	0.82	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1463887	1464035	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1464036	1464135	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1464136	1464199	0.91	+	1	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1464136	1464199	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1464200	1464311	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1464312	1464356	1	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1464312	1464356	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1464357	1464451	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1464452	1464558	1	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1464452	1464558	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1464559	1464639	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1464640	1464703	1	+	1	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1464640	1464703	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1464704	1464791	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1464792	1464859	1	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1464792	1464859	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1464860	1464933	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1464934	1465060	1	+	1	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1464934	1465060	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1465061	1465137	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1465138	1465526	1	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1465138	1465526	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1465527	1465617	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1465618	1465703	1	+	1	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1465618	1465703	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	intron	1465704	1465801	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	CDS	1465802	1465902	1	+	2	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	exon	1465802	1465902	.	+	.	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
Ledus.S2	AUGUSTUS	stop_codon	1465903	1465905	.	+	0	transcript_id "Ledus.S2G017700.t1"; gene_id "Ledus.S2G017700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10925.t1 is derived from g4543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	624215	625119	.	-	.	Ledus.S4G008100
Ledus.S4	AUGUSTUS	transcript	624215	625119	.	-	.	transcript_id "Ledus.S4G008100.t1"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	stop_codon	624212	624214	.	-	0	transcript_id "Ledus.S4G008100.t1"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	CDS	624215	624988	1	-	0	transcript_id "Ledus.S4G008100.t1"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	exon	624215	624988	.	-	.	transcript_id "Ledus.S4G008100.t1"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	intron	624989	625065	.	-	.	transcript_id "Ledus.S4G008100.t1"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	CDS	625066	625119	0.91	-	0	transcript_id "Ledus.S4G008100.t1"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	exon	625066	625119	.	-	.	transcript_id "Ledus.S4G008100.t1"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	start_codon	625117	625119	.	-	0	transcript_id "Ledus.S4G008100.t1"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	transcript	624215	625119	.	-	.	transcript_id "Ledus.S4G008100.t2"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	stop_codon	624212	624214	.	-	0	transcript_id "Ledus.S4G008100.t2"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	CDS	624215	624991	1	-	0	transcript_id "Ledus.S4G008100.t2"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	exon	624215	624991	.	-	.	transcript_id "Ledus.S4G008100.t2"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	intron	624992	625065	.	-	.	transcript_id "Ledus.S4G008100.t2"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	CDS	625066	625119	0.89	-	0	transcript_id "Ledus.S4G008100.t2"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	exon	625066	625119	.	-	.	transcript_id "Ledus.S4G008100.t2"; gene_id "Ledus.S4G008100"
Ledus.S4	AUGUSTUS	start_codon	625117	625119	.	-	0	transcript_id "Ledus.S4G008100.t2"; gene_id "Ledus.S4G008100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3024.t1 is derived from g459.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5378330	5380404	.	+	.	Ledus.S1G044500
Ledus.S1	AUGUSTUS	transcript	5378330	5380404	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	start_codon	5378330	5378332	.	+	0	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	CDS	5378330	5378353	0.56	+	0	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	exon	5378330	5378353	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	intron	5378354	5378512	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	CDS	5378513	5378593	1	+	0	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	exon	5378513	5378593	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	intron	5378594	5378676	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	CDS	5378677	5378797	1	+	0	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	exon	5378677	5378797	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	intron	5378798	5378925	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	CDS	5378926	5379020	0.95	+	2	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	exon	5378926	5379020	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	intron	5379021	5379126	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	CDS	5379127	5379198	1	+	0	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	exon	5379127	5379198	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	intron	5379199	5379323	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	CDS	5379324	5379644	1	+	0	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	exon	5379324	5379644	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	intron	5379645	5379801	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	CDS	5379802	5379922	0.94	+	0	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	exon	5379802	5379922	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	intron	5379923	5380029	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	CDS	5380030	5380225	1	+	2	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	exon	5380030	5380225	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	intron	5380226	5380325	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	CDS	5380326	5380404	1	+	1	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	exon	5380326	5380404	.	+	.	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
Ledus.S1	AUGUSTUS	stop_codon	5380405	5380407	.	+	0	transcript_id "Ledus.S1G044500.t1"; gene_id "Ledus.S1G044500"
# This transcript jg6573.t2 is derived from g4016.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6574.t1 is derived from g4017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32459358	32459732	.	+	.	Ledus.S1G399500
Ledus.S1	AUGUSTUS	transcript	32459358	32459732	.	+	.	transcript_id "Ledus.S1G399500.t1"; gene_id "Ledus.S1G399500"
Ledus.S1	AUGUSTUS	start_codon	32459358	32459360	.	+	0	transcript_id "Ledus.S1G399500.t1"; gene_id "Ledus.S1G399500"
Ledus.S1	AUGUSTUS	CDS	32459358	32459732	0.94	+	0	transcript_id "Ledus.S1G399500.t1"; gene_id "Ledus.S1G399500"
Ledus.S1	AUGUSTUS	exon	32459358	32459732	.	+	.	transcript_id "Ledus.S1G399500.t1"; gene_id "Ledus.S1G399500"
Ledus.S1	AUGUSTUS	stop_codon	32459733	32459735	.	+	0	transcript_id "Ledus.S1G399500.t1"; gene_id "Ledus.S1G399500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2561.t1 is derived from g9424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18971752	18976943	.	+	.	Ledus.S2G244300
Ledus.S2	AUGUSTUS	transcript	18971752	18976943	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	start_codon	18971752	18971754	.	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18971752	18971902	0.85	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18971752	18971902	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18971903	18972302	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18972303	18972392	0.97	+	2	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18972303	18972392	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18972393	18972513	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18972514	18972632	1	+	2	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18972514	18972632	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18972633	18972929	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18972930	18973043	0.94	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18972930	18973043	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18973044	18973153	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18973154	18973235	1	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18973154	18973235	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18973236	18973322	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18973323	18973390	1	+	2	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18973323	18973390	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18973391	18973569	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18973570	18973647	1	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18973570	18973647	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18973648	18973745	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18973746	18973888	1	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18973746	18973888	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18973889	18974029	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18974030	18974132	1	+	1	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18974030	18974132	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18974133	18974227	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18974228	18974308	1	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18974228	18974308	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18974309	18974461	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18974462	18974530	0.99	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18974462	18974530	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18974531	18974633	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18974634	18974696	0.98	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18974634	18974696	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18974697	18974840	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18974841	18974999	0.99	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18974841	18974999	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18975000	18975339	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18975340	18975618	0.99	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18975340	18975618	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18975619	18975744	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18975745	18975831	1	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18975745	18975831	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18975832	18976026	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18976027	18976098	1	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18976027	18976098	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	intron	18976099	18976217	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	CDS	18976218	18976943	1	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	exon	18976218	18976943	.	+	.	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
Ledus.S2	AUGUSTUS	stop_codon	18976944	18976946	.	+	0	transcript_id "Ledus.S2G244300.t1"; gene_id "Ledus.S2G244300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9908.t1 is derived from g10938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11109669	11109902	.	-	.	Ledus.S3G138500
Ledus.S3	AUGUSTUS	transcript	11109669	11109902	.	-	.	transcript_id "Ledus.S3G138500.t1"; gene_id "Ledus.S3G138500"
Ledus.S3	AUGUSTUS	stop_codon	11109666	11109668	.	-	0	transcript_id "Ledus.S3G138500.t1"; gene_id "Ledus.S3G138500"
Ledus.S3	AUGUSTUS	CDS	11109669	11109902	0.57	-	0	transcript_id "Ledus.S3G138500.t1"; gene_id "Ledus.S3G138500"
Ledus.S3	AUGUSTUS	exon	11109669	11109902	.	-	.	transcript_id "Ledus.S3G138500.t1"; gene_id "Ledus.S3G138500"
Ledus.S3	AUGUSTUS	start_codon	11109900	11109902	.	-	0	transcript_id "Ledus.S3G138500.t1"; gene_id "Ledus.S3G138500"
# This transcript jg10952.t2 is derived from g4570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10953.t1 is derived from g4571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	871744	877335	.	-	.	Ledus.S4G010900
Ledus.S4	AUGUSTUS	transcript	871744	877335	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	stop_codon	871741	871743	.	-	0	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	871744	872631	0.98	-	0	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	871744	872631	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	872632	872752	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	872753	872992	0.99	-	0	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	872753	872992	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	872993	873135	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	873136	873252	1	-	0	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	873136	873252	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	873253	873382	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	873383	873679	1	-	0	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	873383	873679	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	873680	873809	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	873810	874302	1	-	1	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	873810	874302	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	874303	874386	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	874387	874534	1	-	2	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	874387	874534	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	874535	874630	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	874631	874708	1	-	2	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	874631	874708	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	874709	874991	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	874992	875093	1	-	2	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	874992	875093	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	875094	875253	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	875254	875329	1	-	0	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	875254	875329	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	875330	875505	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	875506	875681	0.99	-	2	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	875506	875681	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	875682	875784	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	875785	875859	0.98	-	2	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	875785	875859	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	875860	875969	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	875970	876031	1	-	1	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	875970	876031	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	876032	876141	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	876142	876245	1	-	0	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	876142	876245	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	876246	876430	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	876431	876525	1	-	2	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	876431	876525	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	876526	876997	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	876998	877088	1	-	0	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	876998	877088	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	intron	877089	877197	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	CDS	877198	877335	0.95	-	0	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	exon	877198	877335	.	-	.	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
Ledus.S4	AUGUSTUS	start_codon	877333	877335	.	-	0	transcript_id "Ledus.S4G010900.t1"; gene_id "Ledus.S4G010900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1534.t1 is derived from g8395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10840802	10842189	.	-	.	Ledus.S2G141600
Ledus.S2	AUGUSTUS	transcript	10840802	10842189	.	-	.	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	stop_codon	10840799	10840801	.	-	0	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	CDS	10840802	10840900	1	-	0	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	exon	10840802	10840900	.	-	.	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	intron	10840901	10840987	.	-	.	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	CDS	10840988	10841188	1	-	0	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	exon	10840988	10841188	.	-	.	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	intron	10841189	10841311	.	-	.	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	CDS	10841312	10841497	1	-	0	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	exon	10841312	10841497	.	-	.	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	intron	10841498	10841630	.	-	.	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	CDS	10841631	10841768	1	-	0	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	exon	10841631	10841768	.	-	.	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	intron	10841769	10841861	.	-	.	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	CDS	10841862	10841967	1	-	1	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	exon	10841862	10841967	.	-	.	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	intron	10841968	10842109	.	-	.	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	CDS	10842110	10842189	0.57	-	0	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	exon	10842110	10842189	.	-	.	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
Ledus.S2	AUGUSTUS	start_codon	10842187	10842189	.	-	0	transcript_id "Ledus.S2G141600.t1"; gene_id "Ledus.S2G141600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5059.t1 is derived from g2498.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21337577	21341905	.	+	.	Ledus.S1G248000
Ledus.S1	AUGUSTUS	transcript	21337577	21341905	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	start_codon	21337577	21337579	.	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21337577	21337663	0.45	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21337577	21337663	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21337664	21337765	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21337766	21337861	0.69	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21337766	21337861	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21337862	21337941	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21337942	21338175	0.96	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21337942	21338175	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21338176	21338330	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21338331	21338348	0.88	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21338331	21338348	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21338349	21338597	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21338598	21338716	1	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21338598	21338716	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21338717	21338868	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21338869	21338966	1	+	1	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21338869	21338966	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21338967	21339053	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21339054	21339113	1	+	2	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21339054	21339113	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21339114	21339209	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21339210	21339256	1	+	2	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21339210	21339256	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21339257	21339366	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21339367	21339561	0.99	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21339367	21339561	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21339562	21339733	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21339734	21339780	1	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21339734	21339780	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21339781	21339966	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21339967	21340033	1	+	1	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21339967	21340033	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21340034	21340210	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21340211	21340311	1	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21340211	21340311	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21340312	21340544	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21340545	21340646	1	+	1	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21340545	21340646	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21340647	21340865	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21340866	21341004	1	+	1	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21340866	21341004	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21341005	21341233	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21341234	21341296	1	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21341234	21341296	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21341297	21341364	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21341365	21341448	1	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21341365	21341448	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	intron	21341449	21341560	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	CDS	21341561	21341905	0.96	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	exon	21341561	21341905	.	+	.	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
Ledus.S1	AUGUSTUS	stop_codon	21341906	21341908	.	+	0	transcript_id "Ledus.S1G248000.t1"; gene_id "Ledus.S1G248000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10709.t1 is derived from g11739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17305304	17306603	.	+	.	Ledus.S3G218600
Ledus.S3	AUGUSTUS	transcript	17305304	17306603	.	+	.	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	start_codon	17305304	17305306	.	+	0	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	CDS	17305304	17305471	0.9	+	0	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	exon	17305304	17305471	.	+	.	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	intron	17305472	17305560	.	+	.	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	CDS	17305561	17305656	1	+	0	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	exon	17305561	17305656	.	+	.	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	intron	17305657	17305730	.	+	.	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	CDS	17305731	17305949	1	+	0	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	exon	17305731	17305949	.	+	.	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	intron	17305950	17306044	.	+	.	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	CDS	17306045	17306141	1	+	0	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	exon	17306045	17306141	.	+	.	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	intron	17306142	17306225	.	+	.	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	CDS	17306226	17306288	1	+	2	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	exon	17306226	17306288	.	+	.	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	intron	17306289	17306400	.	+	.	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	CDS	17306401	17306603	0.94	+	2	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	exon	17306401	17306603	.	+	.	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
Ledus.S3	AUGUSTUS	stop_codon	17306604	17306606	.	+	0	transcript_id "Ledus.S3G218600.t1"; gene_id "Ledus.S3G218600"
# This transcript jg10818.t2 is derived from g11850.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10819.t1 is derived from g11851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18033927	18034445	.	+	.	Ledus.S3G229600
Ledus.S3	AUGUSTUS	transcript	18033927	18034445	.	+	.	transcript_id "Ledus.S3G229600.t1"; gene_id "Ledus.S3G229600"
Ledus.S3	AUGUSTUS	start_codon	18033927	18033929	.	+	0	transcript_id "Ledus.S3G229600.t1"; gene_id "Ledus.S3G229600"
Ledus.S3	AUGUSTUS	CDS	18033927	18034445	0.75	+	0	transcript_id "Ledus.S3G229600.t1"; gene_id "Ledus.S3G229600"
Ledus.S3	AUGUSTUS	exon	18033927	18034445	.	+	.	transcript_id "Ledus.S3G229600.t1"; gene_id "Ledus.S3G229600"
Ledus.S3	AUGUSTUS	stop_codon	18034446	18034448	.	+	0	transcript_id "Ledus.S3G229600.t1"; gene_id "Ledus.S3G229600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9146.t1 is derived from g10176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4882670	4886803	.	+	.	Ledus.S3G062300
Ledus.S3	AUGUSTUS	transcript	4882670	4886803	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	start_codon	4882670	4882672	.	+	0	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	CDS	4882670	4882705	0.94	+	0	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	exon	4882670	4882705	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	intron	4882706	4882901	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	CDS	4882902	4883681	1	+	0	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	exon	4882902	4883681	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	intron	4883682	4883838	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	CDS	4883839	4883966	1	+	0	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	exon	4883839	4883966	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	intron	4883967	4884087	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	CDS	4884088	4884228	1	+	1	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	exon	4884088	4884228	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	intron	4884229	4884477	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	CDS	4884478	4884564	1	+	1	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	exon	4884478	4884564	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	intron	4884565	4884669	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	CDS	4884670	4884823	1	+	1	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	exon	4884670	4884823	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	intron	4884824	4884905	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	CDS	4884906	4884965	1	+	0	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	exon	4884906	4884965	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	intron	4884966	4885186	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	CDS	4885187	4885615	1	+	0	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	exon	4885187	4885615	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	intron	4885616	4885717	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	CDS	4885718	4886013	1	+	0	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	exon	4885718	4886013	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	intron	4886014	4886086	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	CDS	4886087	4886216	1	+	1	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	exon	4886087	4886216	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	intron	4886217	4886314	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	CDS	4886315	4886803	1	+	0	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	exon	4886315	4886803	.	+	.	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
Ledus.S3	AUGUSTUS	stop_codon	4886804	4886806	.	+	0	transcript_id "Ledus.S3G062300.t1"; gene_id "Ledus.S3G062300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4362.t1 is derived from g1798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16585674	16586078	.	+	.	Ledus.S1G178300
Ledus.S1	AUGUSTUS	transcript	16585674	16586078	.	+	.	transcript_id "Ledus.S1G178300.t1"; gene_id "Ledus.S1G178300"
Ledus.S1	AUGUSTUS	start_codon	16585674	16585676	.	+	0	transcript_id "Ledus.S1G178300.t1"; gene_id "Ledus.S1G178300"
Ledus.S1	AUGUSTUS	CDS	16585674	16586078	1	+	0	transcript_id "Ledus.S1G178300.t1"; gene_id "Ledus.S1G178300"
Ledus.S1	AUGUSTUS	exon	16585674	16586078	.	+	.	transcript_id "Ledus.S1G178300.t1"; gene_id "Ledus.S1G178300"
Ledus.S1	AUGUSTUS	stop_codon	16586079	16586081	.	+	0	transcript_id "Ledus.S1G178300.t1"; gene_id "Ledus.S1G178300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6322.t1 is derived from g3765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30488847	30493853	.	-	.	Ledus.S1G374300
Ledus.S1	AUGUSTUS	transcript	30488847	30493853	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	stop_codon	30488844	30488846	.	-	0	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	CDS	30488847	30490414	0.96	-	2	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	exon	30488847	30490414	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	intron	30490415	30490537	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	CDS	30490538	30491400	0.98	-	1	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	exon	30490538	30491400	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	intron	30491401	30491536	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	CDS	30491537	30491721	1	-	0	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	exon	30491537	30491721	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	intron	30491722	30491937	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	CDS	30491938	30492279	0.91	-	0	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	exon	30491938	30492279	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	intron	30492280	30492606	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	CDS	30492607	30492687	1	-	0	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	exon	30492607	30492687	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	intron	30492688	30492865	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	CDS	30492866	30492989	1	-	1	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	exon	30492866	30492989	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	intron	30492990	30493076	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	CDS	30493077	30493191	1	-	2	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	exon	30493077	30493191	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	intron	30493192	30493328	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	CDS	30493329	30493393	1	-	1	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	exon	30493329	30493393	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	intron	30493394	30493509	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	CDS	30493510	30493853	0.95	-	0	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	exon	30493510	30493853	.	-	.	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
Ledus.S1	AUGUSTUS	start_codon	30493851	30493853	.	-	0	transcript_id "Ledus.S1G374300.t1"; gene_id "Ledus.S1G374300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6416.t1 is derived from g3859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31148207	31151246	.	-	.	Ledus.S1G383700
Ledus.S1	AUGUSTUS	transcript	31148207	31151246	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	stop_codon	31148204	31148206	.	-	0	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	CDS	31148207	31149166	1	-	0	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	exon	31148207	31149166	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	intron	31149167	31149267	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	CDS	31149268	31149421	1	-	1	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	exon	31149268	31149421	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	intron	31149422	31149585	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	CDS	31149586	31149734	1	-	0	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	exon	31149586	31149734	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	intron	31149735	31149854	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	CDS	31149855	31150137	1	-	1	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	exon	31149855	31150137	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	intron	31150138	31150227	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	CDS	31150228	31150333	1	-	2	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	exon	31150228	31150333	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	intron	31150334	31150448	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	CDS	31150449	31150539	0.97	-	0	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	exon	31150449	31150539	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	intron	31150540	31150742	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	CDS	31150743	31151246	0.37	-	0	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	exon	31150743	31151246	.	-	.	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
Ledus.S1	AUGUSTUS	start_codon	31151244	31151246	.	-	0	transcript_id "Ledus.S1G383700.t1"; gene_id "Ledus.S1G383700"
# This transcript jg6307.t2 is derived from g3750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6308.t1 is derived from g3751.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30433631	30435221	.	+	.	Ledus.S1G372900
Ledus.S1	AUGUSTUS	transcript	30433631	30435093	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	start_codon	30433631	30433633	.	+	0	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30433631	30433990	0.6	+	0	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30433631	30433990	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	intron	30433991	30434070	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30434071	30434202	1	+	0	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30434071	30434202	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	intron	30434203	30434294	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30434295	30434371	1	+	0	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30434295	30434371	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	intron	30434372	30434458	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30434459	30434594	1	+	1	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30434459	30434594	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	intron	30434595	30434689	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30434690	30434830	1	+	0	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30434690	30434830	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	intron	30434831	30434899	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30434900	30434958	1	+	0	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30434900	30434958	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	intron	30434959	30435041	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30435042	30435093	1	+	1	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30435042	30435093	.	+	.	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	stop_codon	30435094	30435096	.	+	0	transcript_id "Ledus.S1G372900.t1"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	transcript	30433631	30435221	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	start_codon	30433631	30433633	.	+	0	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30433631	30433990	0.52	+	0	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30433631	30433990	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	intron	30433991	30434070	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30434071	30434202	1	+	0	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30434071	30434202	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	intron	30434203	30434294	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30434295	30434371	1	+	0	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30434295	30434371	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	intron	30434372	30434458	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30434459	30434594	1	+	1	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30434459	30434594	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	intron	30434595	30434689	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30434690	30434830	1	+	0	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30434690	30434830	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	intron	30434831	30434899	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30434900	30434974	0.62	+	0	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30434900	30434974	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	intron	30434975	30435041	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	CDS	30435042	30435221	0.62	+	0	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	exon	30435042	30435221	.	+	.	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
Ledus.S1	AUGUSTUS	stop_codon	30435222	30435224	.	+	0	transcript_id "Ledus.S1G372900.t2"; gene_id "Ledus.S1G372900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5421.t1 is derived from g2860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24067312	24068381	.	+	.	Ledus.S1G284200
Ledus.S1	AUGUSTUS	transcript	24067312	24068381	.	+	.	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	start_codon	24067312	24067314	.	+	0	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	CDS	24067312	24067568	1	+	0	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	exon	24067312	24067568	.	+	.	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	intron	24067569	24067646	.	+	.	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	CDS	24067647	24067808	1	+	1	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	exon	24067647	24067808	.	+	.	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	intron	24067809	24067880	.	+	.	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	CDS	24067881	24068043	1	+	1	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	exon	24067881	24068043	.	+	.	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	intron	24068044	24068171	.	+	.	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	CDS	24068172	24068263	1	+	0	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	exon	24068172	24068263	.	+	.	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	intron	24068264	24068356	.	+	.	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	CDS	24068357	24068381	1	+	1	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	exon	24068357	24068381	.	+	.	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
Ledus.S1	AUGUSTUS	stop_codon	24068382	24068384	.	+	0	transcript_id "Ledus.S1G284200.t1"; gene_id "Ledus.S1G284200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5063.t1 is derived from g2502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21420804	21421781	.	+	.	Ledus.S1G248400
Ledus.S1	AUGUSTUS	transcript	21420804	21421781	.	+	.	transcript_id "Ledus.S1G248400.t1"; gene_id "Ledus.S1G248400"
Ledus.S1	AUGUSTUS	start_codon	21420804	21420806	.	+	0	transcript_id "Ledus.S1G248400.t1"; gene_id "Ledus.S1G248400"
Ledus.S1	AUGUSTUS	CDS	21420804	21421781	1	+	0	transcript_id "Ledus.S1G248400.t1"; gene_id "Ledus.S1G248400"
Ledus.S1	AUGUSTUS	exon	21420804	21421781	.	+	.	transcript_id "Ledus.S1G248400.t1"; gene_id "Ledus.S1G248400"
Ledus.S1	AUGUSTUS	stop_codon	21421782	21421784	.	+	0	transcript_id "Ledus.S1G248400.t1"; gene_id "Ledus.S1G248400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12966.t1 is derived from g6776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1273373	1274285	.	-	.	Ledus.S6G002800
Ledus.S6	AUGUSTUS	transcript	1273373	1274285	.	-	.	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	stop_codon	1273370	1273372	.	-	0	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	CDS	1273373	1273383	0.95	-	2	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	exon	1273373	1273383	.	-	.	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	intron	1273384	1273537	.	-	.	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	CDS	1273538	1273645	0.9	-	2	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	exon	1273538	1273645	.	-	.	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	intron	1273646	1273820	.	-	.	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	CDS	1273821	1273946	0.71	-	2	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	exon	1273821	1273946	.	-	.	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	intron	1273947	1274098	.	-	.	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	CDS	1274099	1274173	1	-	2	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	exon	1274099	1274173	.	-	.	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	intron	1274174	1274251	.	-	.	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	CDS	1274252	1274285	0.91	-	0	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	exon	1274252	1274285	.	-	.	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
Ledus.S6	AUGUSTUS	start_codon	1274283	1274285	.	-	0	transcript_id "Ledus.S6G002800.t1"; gene_id "Ledus.S6G002800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8327.t1 is derived from g12999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10769803	10770258	.	+	.	Ledus.S5G110500
Ledus.S5	AUGUSTUS	transcript	10769803	10770258	.	+	.	transcript_id "Ledus.S5G110500.t1"; gene_id "Ledus.S5G110500"
Ledus.S5	AUGUSTUS	start_codon	10769803	10769805	.	+	0	transcript_id "Ledus.S5G110500.t1"; gene_id "Ledus.S5G110500"
Ledus.S5	AUGUSTUS	CDS	10769803	10770258	0.98	+	0	transcript_id "Ledus.S5G110500.t1"; gene_id "Ledus.S5G110500"
Ledus.S5	AUGUSTUS	exon	10769803	10770258	.	+	.	transcript_id "Ledus.S5G110500.t1"; gene_id "Ledus.S5G110500"
Ledus.S5	AUGUSTUS	stop_codon	10770259	10770261	.	+	0	transcript_id "Ledus.S5G110500.t1"; gene_id "Ledus.S5G110500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9949.t1 is derived from g10979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11435090	11435758	.	-	.	Ledus.S3G142600
Ledus.S3	AUGUSTUS	transcript	11435090	11435758	.	-	.	transcript_id "Ledus.S3G142600.t1"; gene_id "Ledus.S3G142600"
Ledus.S3	AUGUSTUS	stop_codon	11435087	11435089	.	-	0	transcript_id "Ledus.S3G142600.t1"; gene_id "Ledus.S3G142600"
Ledus.S3	AUGUSTUS	CDS	11435090	11435176	1	-	0	transcript_id "Ledus.S3G142600.t1"; gene_id "Ledus.S3G142600"
Ledus.S3	AUGUSTUS	exon	11435090	11435176	.	-	.	transcript_id "Ledus.S3G142600.t1"; gene_id "Ledus.S3G142600"
Ledus.S3	AUGUSTUS	intron	11435177	11435262	.	-	.	transcript_id "Ledus.S3G142600.t1"; gene_id "Ledus.S3G142600"
Ledus.S3	AUGUSTUS	CDS	11435263	11435388	1	-	0	transcript_id "Ledus.S3G142600.t1"; gene_id "Ledus.S3G142600"
Ledus.S3	AUGUSTUS	exon	11435263	11435388	.	-	.	transcript_id "Ledus.S3G142600.t1"; gene_id "Ledus.S3G142600"
Ledus.S3	AUGUSTUS	intron	11435389	11435476	.	-	.	transcript_id "Ledus.S3G142600.t1"; gene_id "Ledus.S3G142600"
Ledus.S3	AUGUSTUS	CDS	11435477	11435758	1	-	0	transcript_id "Ledus.S3G142600.t1"; gene_id "Ledus.S3G142600"
Ledus.S3	AUGUSTUS	exon	11435477	11435758	.	-	.	transcript_id "Ledus.S3G142600.t1"; gene_id "Ledus.S3G142600"
Ledus.S3	AUGUSTUS	start_codon	11435756	11435758	.	-	0	transcript_id "Ledus.S3G142600.t1"; gene_id "Ledus.S3G142600"
# This transcript jg107.t2 is derived from g9520.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg108.t1 is derived from g9521.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	448967	451100	.	+	.	Ledus.C8G006800
Ledus.C8	AUGUSTUS	transcript	448967	451100	.	+	.	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	start_codon	448967	448969	.	+	0	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	CDS	448967	449113	0.88	+	0	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	exon	448967	449113	.	+	.	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	intron	449114	449215	.	+	.	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	CDS	449216	449391	0.93	+	0	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	exon	449216	449391	.	+	.	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	intron	449392	449770	.	+	.	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	CDS	449771	450071	0.99	+	1	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	exon	449771	450071	.	+	.	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	intron	450072	450166	.	+	.	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	CDS	450167	450530	0.53	+	0	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	exon	450167	450530	.	+	.	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	intron	450531	450639	.	+	.	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	CDS	450640	451100	0.54	+	2	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	exon	450640	451100	.	+	.	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
Ledus.C8	AUGUSTUS	stop_codon	451101	451103	.	+	0	transcript_id "Ledus.C8G006800.t1"; gene_id "Ledus.C8G006800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13051.t1 is derived from g6861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4170034	4170783	.	-	.	Ledus.S6G011300
Ledus.S6	AUGUSTUS	transcript	4170034	4170783	.	-	.	transcript_id "Ledus.S6G011300.t1"; gene_id "Ledus.S6G011300"
Ledus.S6	AUGUSTUS	stop_codon	4170031	4170033	.	-	0	transcript_id "Ledus.S6G011300.t1"; gene_id "Ledus.S6G011300"
Ledus.S6	AUGUSTUS	CDS	4170034	4170549	0.48	-	0	transcript_id "Ledus.S6G011300.t1"; gene_id "Ledus.S6G011300"
Ledus.S6	AUGUSTUS	exon	4170034	4170549	.	-	.	transcript_id "Ledus.S6G011300.t1"; gene_id "Ledus.S6G011300"
Ledus.S6	AUGUSTUS	intron	4170550	4170648	.	-	.	transcript_id "Ledus.S6G011300.t1"; gene_id "Ledus.S6G011300"
Ledus.S6	AUGUSTUS	CDS	4170649	4170783	0.46	-	0	transcript_id "Ledus.S6G011300.t1"; gene_id "Ledus.S6G011300"
Ledus.S6	AUGUSTUS	exon	4170649	4170783	.	-	.	transcript_id "Ledus.S6G011300.t1"; gene_id "Ledus.S6G011300"
Ledus.S6	AUGUSTUS	start_codon	4170781	4170783	.	-	0	transcript_id "Ledus.S6G011300.t1"; gene_id "Ledus.S6G011300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5011.t1 is derived from g2449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21117356	21119621	.	-	.	Ledus.S1G243200
Ledus.S1	AUGUSTUS	transcript	21117356	21119621	.	-	.	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	stop_codon	21117353	21117355	.	-	0	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	CDS	21117356	21117359	0.87	-	1	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	exon	21117356	21117359	.	-	.	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	intron	21117360	21117459	.	-	.	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	CDS	21117460	21117801	0.87	-	1	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	exon	21117460	21117801	.	-	.	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	intron	21117802	21117919	.	-	.	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	CDS	21117920	21118245	0.72	-	0	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	exon	21117920	21118245	.	-	.	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	intron	21118246	21118875	.	-	.	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	CDS	21118876	21119306	0.94	-	2	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	exon	21118876	21119306	.	-	.	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	intron	21119307	21119464	.	-	.	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	CDS	21119465	21119621	0.99	-	0	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	exon	21119465	21119621	.	-	.	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
Ledus.S1	AUGUSTUS	start_codon	21119619	21119621	.	-	0	transcript_id "Ledus.S1G243200.t1"; gene_id "Ledus.S1G243200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5109.t1 is derived from g2548.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21760303	21766335	.	+	.	Ledus.S1G253000
Ledus.S1	AUGUSTUS	transcript	21760303	21766335	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	start_codon	21760303	21760305	.	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21760303	21760640	0.51	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21760303	21760640	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21760641	21760720	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21760721	21760739	0.98	+	1	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21760721	21760739	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21760740	21760837	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21760838	21760873	1	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21760838	21760873	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21760874	21760952	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21760953	21761619	1	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21760953	21761619	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21761620	21761711	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21761712	21761812	1	+	2	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21761712	21761812	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21761813	21761915	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21761916	21762304	0.93	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21761916	21762304	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21762305	21762404	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21762405	21762519	1	+	1	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21762405	21762519	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21762520	21762599	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21762600	21762701	1	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21762600	21762701	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21762702	21762886	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21762887	21763037	1	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21762887	21763037	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21763038	21763167	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21763168	21763256	1	+	2	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21763168	21763256	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21763257	21763393	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21763394	21763442	1	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21763394	21763442	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21763443	21763602	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21763603	21763703	1	+	2	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21763603	21763703	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21763704	21763842	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21763843	21764030	1	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21763843	21764030	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21764031	21764566	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21764567	21764684	1	+	1	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21764567	21764684	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21764685	21764788	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21764789	21764968	0.92	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21764789	21764968	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21764969	21765060	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21765061	21765183	1	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21765061	21765183	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21765184	21765267	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21765268	21765355	1	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21765268	21765355	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21765356	21765443	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21765444	21765586	0.98	+	2	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21765444	21765586	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21765587	21765694	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21765695	21765793	1	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21765695	21765793	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21765794	21765888	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21765889	21766335	0.46	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21765889	21766335	.	+	.	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	stop_codon	21766336	21766338	.	+	0	transcript_id "Ledus.S1G253000.t1"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	transcript	21760303	21766335	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	start_codon	21760303	21760305	.	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21760303	21760640	0.46	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21760303	21760640	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21760641	21760720	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21760721	21760739	1	+	1	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21760721	21760739	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21760740	21760837	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21760838	21760873	1	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21760838	21760873	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21760874	21760952	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21760953	21761619	1	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21760953	21761619	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21761620	21761711	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21761712	21761812	1	+	2	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21761712	21761812	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21761813	21761915	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21761916	21762304	0.95	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21761916	21762304	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21762305	21762404	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21762405	21762519	1	+	1	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21762405	21762519	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21762520	21762599	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21762600	21762701	1	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21762600	21762701	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21762702	21762886	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21762887	21763037	1	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21762887	21763037	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21763038	21763167	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21763168	21763256	1	+	2	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21763168	21763256	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21763257	21763393	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21763394	21763442	1	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21763394	21763442	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21763443	21763602	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21763603	21763703	1	+	2	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21763603	21763703	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21763704	21763842	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21763843	21764030	1	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21763843	21764030	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21764031	21764260	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21764261	21764323	1	+	1	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21764261	21764323	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21764324	21764566	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21764567	21764684	1	+	1	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21764567	21764684	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21764685	21764788	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21764789	21764968	0.85	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21764789	21764968	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21764969	21765060	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21765061	21765183	1	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21765061	21765183	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21765184	21765267	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21765268	21765355	1	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21765268	21765355	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21765356	21765455	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21765456	21765586	0.98	+	2	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21765456	21765586	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21765587	21765694	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21765695	21765793	1	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21765695	21765793	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	intron	21765794	21765888	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	CDS	21765889	21766335	0.45	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	exon	21765889	21766335	.	+	.	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
Ledus.S1	AUGUSTUS	stop_codon	21766336	21766338	.	+	0	transcript_id "Ledus.S1G253000.t2"; gene_id "Ledus.S1G253000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3199.t1 is derived from g634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6771022	6771547	.	+	.	Ledus.S1G062000
Ledus.S1	AUGUSTUS	transcript	6771022	6771547	.	+	.	transcript_id "Ledus.S1G062000.t1"; gene_id "Ledus.S1G062000"
Ledus.S1	AUGUSTUS	start_codon	6771022	6771024	.	+	0	transcript_id "Ledus.S1G062000.t1"; gene_id "Ledus.S1G062000"
Ledus.S1	AUGUSTUS	CDS	6771022	6771400	0.55	+	0	transcript_id "Ledus.S1G062000.t1"; gene_id "Ledus.S1G062000"
Ledus.S1	AUGUSTUS	exon	6771022	6771400	.	+	.	transcript_id "Ledus.S1G062000.t1"; gene_id "Ledus.S1G062000"
Ledus.S1	AUGUSTUS	intron	6771401	6771512	.	+	.	transcript_id "Ledus.S1G062000.t1"; gene_id "Ledus.S1G062000"
Ledus.S1	AUGUSTUS	CDS	6771513	6771547	0.7	+	2	transcript_id "Ledus.S1G062000.t1"; gene_id "Ledus.S1G062000"
Ledus.S1	AUGUSTUS	exon	6771513	6771547	.	+	.	transcript_id "Ledus.S1G062000.t1"; gene_id "Ledus.S1G062000"
Ledus.S1	AUGUSTUS	stop_codon	6771548	6771550	.	+	0	transcript_id "Ledus.S1G062000.t1"; gene_id "Ledus.S1G062000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3930.t1 is derived from g1366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13591930	13595694	.	+	.	Ledus.S1G135100
Ledus.S1	AUGUSTUS	transcript	13591930	13595694	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	start_codon	13591930	13591932	.	+	0	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	CDS	13591930	13592590	1	+	0	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	exon	13591930	13592590	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	intron	13592591	13592715	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	CDS	13592716	13592831	1	+	2	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	exon	13592716	13592831	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	intron	13592832	13592920	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	CDS	13592921	13593046	1	+	0	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	exon	13592921	13593046	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	intron	13593047	13593136	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	CDS	13593137	13593322	0.98	+	0	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	exon	13593137	13593322	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	intron	13593323	13593395	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	CDS	13593396	13593611	1	+	0	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	exon	13593396	13593611	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	intron	13593612	13593768	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	CDS	13593769	13593986	1	+	0	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	exon	13593769	13593986	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	intron	13593987	13594074	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	CDS	13594075	13594150	1	+	1	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	exon	13594075	13594150	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	intron	13594151	13594257	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	CDS	13594258	13594347	1	+	0	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	exon	13594258	13594347	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	intron	13594348	13594509	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	CDS	13594510	13595694	1	+	0	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	exon	13594510	13595694	.	+	.	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
Ledus.S1	AUGUSTUS	stop_codon	13595695	13595697	.	+	0	transcript_id "Ledus.S1G135100.t1"; gene_id "Ledus.S1G135100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10353.t1 is derived from g11383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14371022	14371794	.	+	.	Ledus.S3G183000
Ledus.S3	AUGUSTUS	transcript	14371022	14371794	.	+	.	transcript_id "Ledus.S3G183000.t1"; gene_id "Ledus.S3G183000"
Ledus.S3	AUGUSTUS	start_codon	14371022	14371024	.	+	0	transcript_id "Ledus.S3G183000.t1"; gene_id "Ledus.S3G183000"
Ledus.S3	AUGUSTUS	CDS	14371022	14371127	1	+	0	transcript_id "Ledus.S3G183000.t1"; gene_id "Ledus.S3G183000"
Ledus.S3	AUGUSTUS	exon	14371022	14371127	.	+	.	transcript_id "Ledus.S3G183000.t1"; gene_id "Ledus.S3G183000"
Ledus.S3	AUGUSTUS	intron	14371128	14371491	.	+	.	transcript_id "Ledus.S3G183000.t1"; gene_id "Ledus.S3G183000"
Ledus.S3	AUGUSTUS	CDS	14371492	14371567	1	+	2	transcript_id "Ledus.S3G183000.t1"; gene_id "Ledus.S3G183000"
Ledus.S3	AUGUSTUS	exon	14371492	14371567	.	+	.	transcript_id "Ledus.S3G183000.t1"; gene_id "Ledus.S3G183000"
Ledus.S3	AUGUSTUS	intron	14371568	14371640	.	+	.	transcript_id "Ledus.S3G183000.t1"; gene_id "Ledus.S3G183000"
Ledus.S3	AUGUSTUS	CDS	14371641	14371794	0.95	+	1	transcript_id "Ledus.S3G183000.t1"; gene_id "Ledus.S3G183000"
Ledus.S3	AUGUSTUS	exon	14371641	14371794	.	+	.	transcript_id "Ledus.S3G183000.t1"; gene_id "Ledus.S3G183000"
Ledus.S3	AUGUSTUS	stop_codon	14371795	14371797	.	+	0	transcript_id "Ledus.S3G183000.t1"; gene_id "Ledus.S3G183000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6706.t1 is derived from g4149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33425476	33427548	.	+	.	Ledus.S1G412700
Ledus.S1	AUGUSTUS	transcript	33425476	33427548	.	+	.	transcript_id "Ledus.S1G412700.t1"; gene_id "Ledus.S1G412700"
Ledus.S1	AUGUSTUS	start_codon	33425476	33425478	.	+	0	transcript_id "Ledus.S1G412700.t1"; gene_id "Ledus.S1G412700"
Ledus.S1	AUGUSTUS	CDS	33425476	33427548	0.93	+	0	transcript_id "Ledus.S1G412700.t1"; gene_id "Ledus.S1G412700"
Ledus.S1	AUGUSTUS	exon	33425476	33427548	.	+	.	transcript_id "Ledus.S1G412700.t1"; gene_id "Ledus.S1G412700"
Ledus.S1	AUGUSTUS	stop_codon	33427549	33427551	.	+	0	transcript_id "Ledus.S1G412700.t1"; gene_id "Ledus.S1G412700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1401.t1 is derived from g8262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9890567	9894469	.	-	.	Ledus.S2G128300
Ledus.S2	AUGUSTUS	transcript	9890567	9894469	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	stop_codon	9890564	9890566	.	-	0	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	CDS	9890567	9891610	0.98	-	0	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	exon	9890567	9891610	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	intron	9891611	9891717	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	CDS	9891718	9891847	1	-	1	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	exon	9891718	9891847	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	intron	9891848	9892088	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	CDS	9892089	9892225	0.97	-	0	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	exon	9892089	9892225	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	intron	9892226	9892338	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	CDS	9892339	9892428	0.98	-	0	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	exon	9892339	9892428	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	intron	9892429	9892535	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	CDS	9892536	9892719	0.95	-	1	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	exon	9892536	9892719	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	intron	9892720	9892953	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	CDS	9892954	9893015	1	-	0	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	exon	9892954	9893015	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	intron	9893016	9893111	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	CDS	9893112	9893268	1	-	1	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	exon	9893112	9893268	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	intron	9893269	9893427	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	CDS	9893428	9893474	1	-	0	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	exon	9893428	9893474	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	intron	9893475	9893575	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	CDS	9893576	9893731	0.97	-	0	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	exon	9893576	9893731	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	intron	9893732	9893849	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	CDS	9893850	9893897	0.99	-	0	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	exon	9893850	9893897	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	intron	9893898	9893989	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	CDS	9893990	9894469	1	-	0	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	exon	9893990	9894469	.	-	.	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
Ledus.S2	AUGUSTUS	start_codon	9894467	9894469	.	-	0	transcript_id "Ledus.S2G128300.t1"; gene_id "Ledus.S2G128300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12476.t1 is derived from g6097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12225396	12225734	.	-	.	Ledus.S4G163200
Ledus.S4	AUGUSTUS	transcript	12225396	12225734	.	-	.	transcript_id "Ledus.S4G163200.t1"; gene_id "Ledus.S4G163200"
Ledus.S4	AUGUSTUS	stop_codon	12225393	12225395	.	-	0	transcript_id "Ledus.S4G163200.t1"; gene_id "Ledus.S4G163200"
Ledus.S4	AUGUSTUS	CDS	12225396	12225734	0.98	-	0	transcript_id "Ledus.S4G163200.t1"; gene_id "Ledus.S4G163200"
Ledus.S4	AUGUSTUS	exon	12225396	12225734	.	-	.	transcript_id "Ledus.S4G163200.t1"; gene_id "Ledus.S4G163200"
Ledus.S4	AUGUSTUS	start_codon	12225732	12225734	.	-	0	transcript_id "Ledus.S4G163200.t1"; gene_id "Ledus.S4G163200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4824.t1 is derived from g2262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19969395	19970936	.	-	.	Ledus.S1G224500
Ledus.S1	AUGUSTUS	transcript	19969395	19970936	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	stop_codon	19969392	19969394	.	-	0	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	CDS	19969395	19969433	1	-	0	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	exon	19969395	19969433	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	intron	19969434	19969580	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	CDS	19969581	19969640	1	-	0	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	exon	19969581	19969640	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	intron	19969641	19969845	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	CDS	19969846	19969907	1	-	2	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	exon	19969846	19969907	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	intron	19969908	19969982	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	CDS	19969983	19970019	1	-	0	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	exon	19969983	19970019	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	intron	19970020	19970167	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	CDS	19970168	19970218	1	-	0	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	exon	19970168	19970218	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	intron	19970219	19970466	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	CDS	19970467	19970565	1	-	0	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	exon	19970467	19970565	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	intron	19970566	19970933	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	CDS	19970934	19970936	1	-	0	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	exon	19970934	19970936	.	-	.	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
Ledus.S1	AUGUSTUS	start_codon	19970934	19970936	.	-	0	transcript_id "Ledus.S1G224500.t1"; gene_id "Ledus.S1G224500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4676.t1 is derived from g2114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18933057	18938901	.	-	.	Ledus.S1G209700
Ledus.S1	AUGUSTUS	transcript	18933057	18938901	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	stop_codon	18933054	18933056	.	-	0	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18933057	18933299	0.99	-	0	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18933057	18933299	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18933300	18933392	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18933393	18933515	1	-	0	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18933393	18933515	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18933516	18933599	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18933600	18933697	1	-	2	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18933600	18933697	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18933698	18933868	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18933869	18933965	1	-	0	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18933869	18933965	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18933966	18934087	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18934088	18934339	1	-	0	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18934088	18934339	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18934340	18934484	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18934485	18936959	1	-	0	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18934485	18936959	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18936960	18937089	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18937090	18937261	1	-	1	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18937090	18937261	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18937262	18937467	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18937468	18937526	1	-	0	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18937468	18937526	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18937527	18937771	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18937772	18937834	1	-	0	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18937772	18937834	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18937835	18937972	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18937973	18938057	1	-	1	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18937973	18938057	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18938058	18938527	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18938528	18938655	1	-	0	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18938528	18938655	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18938656	18938877	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18938878	18938901	0.59	-	0	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18938878	18938901	.	-	.	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	start_codon	18938899	18938901	.	-	0	transcript_id "Ledus.S1G209700.t1"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	transcript	18933057	18938901	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	stop_codon	18933054	18933056	.	-	0	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18933057	18933299	0.99	-	0	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18933057	18933299	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18933300	18933392	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18933393	18933515	1	-	0	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18933393	18933515	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18933516	18933599	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18933600	18933697	1	-	2	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18933600	18933697	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18933698	18933868	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18933869	18933965	1	-	0	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18933869	18933965	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18933966	18934087	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18934088	18934339	1	-	0	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18934088	18934339	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18934340	18934484	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18934485	18936962	0.9	-	0	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18934485	18936962	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18936963	18937089	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18937090	18937261	0.92	-	1	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18937090	18937261	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18937262	18937467	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18937468	18937526	1	-	0	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18937468	18937526	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18937527	18937771	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18937772	18937834	1	-	0	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18937772	18937834	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18937835	18937972	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18937973	18938057	1	-	1	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18937973	18938057	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18938058	18938527	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18938528	18938655	1	-	0	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18938528	18938655	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	intron	18938656	18938877	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	CDS	18938878	18938901	0.5	-	0	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	exon	18938878	18938901	.	-	.	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
Ledus.S1	AUGUSTUS	start_codon	18938899	18938901	.	-	0	transcript_id "Ledus.S1G209700.t2"; gene_id "Ledus.S1G209700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2579.t1 is derived from g9530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C24	AUGUSTUS	gene	21679	24693	.	-	.	Ledus.C24G000100
Ledus.C24	AUGUSTUS	transcript	21679	24693	.	-	.	transcript_id "Ledus.C24G000100.t1"; gene_id "Ledus.C24G000100"
Ledus.C24	AUGUSTUS	stop_codon	21676	21678	.	-	0	transcript_id "Ledus.C24G000100.t1"; gene_id "Ledus.C24G000100"
Ledus.C24	AUGUSTUS	CDS	21679	24693	0.87	-	0	transcript_id "Ledus.C24G000100.t1"; gene_id "Ledus.C24G000100"
Ledus.C24	AUGUSTUS	exon	21679	24693	.	-	.	transcript_id "Ledus.C24G000100.t1"; gene_id "Ledus.C24G000100"
Ledus.C24	AUGUSTUS	start_codon	24691	24693	.	-	0	transcript_id "Ledus.C24G000100.t1"; gene_id "Ledus.C24G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7215.t1 is derived from g6746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2280799	2281909	.	+	.	Ledus.C7G027600
Ledus.C7	AUGUSTUS	transcript	2280799	2281909	.	+	.	transcript_id "Ledus.C7G027600.t1"; gene_id "Ledus.C7G027600"
Ledus.C7	AUGUSTUS	start_codon	2280799	2280801	.	+	0	transcript_id "Ledus.C7G027600.t1"; gene_id "Ledus.C7G027600"
Ledus.C7	AUGUSTUS	CDS	2280799	2281540	0.39	+	0	transcript_id "Ledus.C7G027600.t1"; gene_id "Ledus.C7G027600"
Ledus.C7	AUGUSTUS	exon	2280799	2281540	.	+	.	transcript_id "Ledus.C7G027600.t1"; gene_id "Ledus.C7G027600"
Ledus.C7	AUGUSTUS	intron	2281541	2281628	.	+	.	transcript_id "Ledus.C7G027600.t1"; gene_id "Ledus.C7G027600"
Ledus.C7	AUGUSTUS	CDS	2281629	2281909	0.65	+	2	transcript_id "Ledus.C7G027600.t1"; gene_id "Ledus.C7G027600"
Ledus.C7	AUGUSTUS	exon	2281629	2281909	.	+	.	transcript_id "Ledus.C7G027600.t1"; gene_id "Ledus.C7G027600"
Ledus.C7	AUGUSTUS	stop_codon	2281910	2281912	.	+	0	transcript_id "Ledus.C7G027600.t1"; gene_id "Ledus.C7G027600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7641.t1 is derived from g12312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4776417	4777470	.	-	.	Ledus.S5G041900
Ledus.S5	AUGUSTUS	transcript	4776417	4777470	.	-	.	transcript_id "Ledus.S5G041900.t1"; gene_id "Ledus.S5G041900"
Ledus.S5	AUGUSTUS	stop_codon	4776414	4776416	.	-	0	transcript_id "Ledus.S5G041900.t1"; gene_id "Ledus.S5G041900"
Ledus.S5	AUGUSTUS	CDS	4776417	4776510	0.68	-	1	transcript_id "Ledus.S5G041900.t1"; gene_id "Ledus.S5G041900"
Ledus.S5	AUGUSTUS	exon	4776417	4776510	.	-	.	transcript_id "Ledus.S5G041900.t1"; gene_id "Ledus.S5G041900"
Ledus.S5	AUGUSTUS	intron	4776511	4776639	.	-	.	transcript_id "Ledus.S5G041900.t1"; gene_id "Ledus.S5G041900"
Ledus.S5	AUGUSTUS	CDS	4776640	4776743	0.89	-	0	transcript_id "Ledus.S5G041900.t1"; gene_id "Ledus.S5G041900"
Ledus.S5	AUGUSTUS	exon	4776640	4776743	.	-	.	transcript_id "Ledus.S5G041900.t1"; gene_id "Ledus.S5G041900"
Ledus.S5	AUGUSTUS	intron	4776744	4776834	.	-	.	transcript_id "Ledus.S5G041900.t1"; gene_id "Ledus.S5G041900"
Ledus.S5	AUGUSTUS	CDS	4776835	4777470	0.71	-	0	transcript_id "Ledus.S5G041900.t1"; gene_id "Ledus.S5G041900"
Ledus.S5	AUGUSTUS	exon	4776835	4777470	.	-	.	transcript_id "Ledus.S5G041900.t1"; gene_id "Ledus.S5G041900"
Ledus.S5	AUGUSTUS	start_codon	4777468	4777470	.	-	0	transcript_id "Ledus.S5G041900.t1"; gene_id "Ledus.S5G041900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5295.t1 is derived from g2734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22910468	22913016	.	+	.	Ledus.S1G271600
Ledus.S1	AUGUSTUS	transcript	22910468	22913016	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	start_codon	22910468	22910470	.	+	0	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	CDS	22910468	22910497	0.78	+	0	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	exon	22910468	22910497	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	intron	22910498	22910581	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	CDS	22910582	22910660	0.79	+	0	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	exon	22910582	22910660	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	intron	22910661	22911054	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	CDS	22911055	22911078	0.48	+	2	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	exon	22911055	22911078	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	intron	22911079	22911166	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	CDS	22911167	22911258	0.48	+	2	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	exon	22911167	22911258	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	intron	22911259	22911344	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	CDS	22911345	22911516	1	+	0	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	exon	22911345	22911516	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	intron	22911517	22911655	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	CDS	22911656	22911809	1	+	2	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	exon	22911656	22911809	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	intron	22911810	22911897	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	CDS	22911898	22912031	1	+	1	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	exon	22911898	22912031	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	intron	22912032	22912121	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	CDS	22912122	22912264	1	+	2	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	exon	22912122	22912264	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	intron	22912265	22912385	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	CDS	22912386	22912584	1	+	0	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	exon	22912386	22912584	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	intron	22912585	22912705	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	CDS	22912706	22913016	0.99	+	2	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	exon	22912706	22913016	.	+	.	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
Ledus.S1	AUGUSTUS	stop_codon	22913017	22913019	.	+	0	transcript_id "Ledus.S1G271600.t1"; gene_id "Ledus.S1G271600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2723.t1 is derived from g156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2530454	2532864	.	-	.	Ledus.S1G014400
Ledus.S1	AUGUSTUS	transcript	2530454	2532864	.	-	.	transcript_id "Ledus.S1G014400.t1"; gene_id "Ledus.S1G014400"
Ledus.S1	AUGUSTUS	stop_codon	2530451	2530453	.	-	0	transcript_id "Ledus.S1G014400.t1"; gene_id "Ledus.S1G014400"
Ledus.S1	AUGUSTUS	CDS	2530454	2530542	1	-	2	transcript_id "Ledus.S1G014400.t1"; gene_id "Ledus.S1G014400"
Ledus.S1	AUGUSTUS	exon	2530454	2530542	.	-	.	transcript_id "Ledus.S1G014400.t1"; gene_id "Ledus.S1G014400"
Ledus.S1	AUGUSTUS	intron	2530543	2530636	.	-	.	transcript_id "Ledus.S1G014400.t1"; gene_id "Ledus.S1G014400"
Ledus.S1	AUGUSTUS	CDS	2530637	2530760	1	-	0	transcript_id "Ledus.S1G014400.t1"; gene_id "Ledus.S1G014400"
Ledus.S1	AUGUSTUS	exon	2530637	2530760	.	-	.	transcript_id "Ledus.S1G014400.t1"; gene_id "Ledus.S1G014400"
Ledus.S1	AUGUSTUS	intron	2530761	2532666	.	-	.	transcript_id "Ledus.S1G014400.t1"; gene_id "Ledus.S1G014400"
Ledus.S1	AUGUSTUS	CDS	2532667	2532864	0.99	-	0	transcript_id "Ledus.S1G014400.t1"; gene_id "Ledus.S1G014400"
Ledus.S1	AUGUSTUS	exon	2532667	2532864	.	-	.	transcript_id "Ledus.S1G014400.t1"; gene_id "Ledus.S1G014400"
Ledus.S1	AUGUSTUS	start_codon	2532862	2532864	.	-	0	transcript_id "Ledus.S1G014400.t1"; gene_id "Ledus.S1G014400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9402.t1 is derived from g10432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6562241	6564039	.	-	.	Ledus.S3G087900
Ledus.S3	AUGUSTUS	transcript	6562241	6564039	.	-	.	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	stop_codon	6562238	6562240	.	-	0	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	CDS	6562241	6562393	0.91	-	0	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	exon	6562241	6562393	.	-	.	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	intron	6562394	6562496	.	-	.	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	CDS	6562497	6562564	0.86	-	2	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	exon	6562497	6562564	.	-	.	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	intron	6562565	6562701	.	-	.	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	CDS	6562702	6562735	1	-	0	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	exon	6562702	6562735	.	-	.	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	intron	6562736	6563002	.	-	.	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	CDS	6563003	6563034	1	-	2	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	exon	6563003	6563034	.	-	.	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	intron	6563035	6563319	.	-	.	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	CDS	6563320	6563371	1	-	0	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	exon	6563320	6563371	.	-	.	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	intron	6563372	6563943	.	-	.	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	CDS	6563944	6564039	0.9	-	0	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	exon	6563944	6564039	.	-	.	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
Ledus.S3	AUGUSTUS	start_codon	6564037	6564039	.	-	0	transcript_id "Ledus.S3G087900.t1"; gene_id "Ledus.S3G087900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6771.t1 is derived from g4214.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34027687	34028508	.	-	.	Ledus.S1G419200
Ledus.S1	AUGUSTUS	transcript	34027687	34028508	.	-	.	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	stop_codon	34027684	34027686	.	-	0	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	CDS	34027687	34027803	0.95	-	0	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	exon	34027687	34027803	.	-	.	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	intron	34027804	34027880	.	-	.	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	CDS	34027881	34027943	0.96	-	0	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	exon	34027881	34027943	.	-	.	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	intron	34027944	34028051	.	-	.	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	CDS	34028052	34028116	0.96	-	2	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	exon	34028052	34028116	.	-	.	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	intron	34028117	34028340	.	-	.	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	CDS	34028341	34028386	0.39	-	0	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	exon	34028341	34028386	.	-	.	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	intron	34028387	34028466	.	-	.	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	CDS	34028467	34028508	0.28	-	0	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	exon	34028467	34028508	.	-	.	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
Ledus.S1	AUGUSTUS	start_codon	34028506	34028508	.	-	0	transcript_id "Ledus.S1G419200.t1"; gene_id "Ledus.S1G419200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9633.t1 is derived from g10663.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8475215	8476619	.	-	.	Ledus.S3G111000
Ledus.S3	AUGUSTUS	transcript	8475215	8476619	.	-	.	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	stop_codon	8475212	8475214	.	-	0	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	CDS	8475215	8475444	0.97	-	2	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	exon	8475215	8475444	.	-	.	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	intron	8475445	8475519	.	-	.	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	CDS	8475520	8475823	1	-	0	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	exon	8475520	8475823	.	-	.	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	intron	8475824	8475903	.	-	.	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	CDS	8475904	8476193	1	-	2	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	exon	8475904	8476193	.	-	.	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	intron	8476194	8476280	.	-	.	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	CDS	8476281	8476481	1	-	2	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	exon	8476281	8476481	.	-	.	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	intron	8476482	8476561	.	-	.	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	CDS	8476562	8476619	0.99	-	0	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	exon	8476562	8476619	.	-	.	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
Ledus.S3	AUGUSTUS	start_codon	8476617	8476619	.	-	0	transcript_id "Ledus.S3G111000.t1"; gene_id "Ledus.S3G111000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11254.t1 is derived from g4872.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2965179	2967530	.	-	.	Ledus.S4G041000
Ledus.S4	AUGUSTUS	transcript	2965179	2967530	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	stop_codon	2965176	2965178	.	-	0	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	CDS	2965179	2965523	0.89	-	0	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	exon	2965179	2965523	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	intron	2965524	2965602	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	CDS	2965603	2965732	0.97	-	1	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	exon	2965603	2965732	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	intron	2965733	2965827	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	CDS	2965828	2966005	0.97	-	2	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	exon	2965828	2966005	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	intron	2966006	2966083	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	CDS	2966084	2966384	1	-	0	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	exon	2966084	2966384	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	intron	2966385	2966484	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	CDS	2966485	2966714	0.97	-	2	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	exon	2966485	2966714	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	intron	2966715	2966821	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	CDS	2966822	2967049	1	-	2	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	exon	2966822	2967049	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	intron	2967050	2967142	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	CDS	2967143	2967530	0.99	-	0	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	exon	2967143	2967530	.	-	.	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
Ledus.S4	AUGUSTUS	start_codon	2967528	2967530	.	-	0	transcript_id "Ledus.S4G041000.t1"; gene_id "Ledus.S4G041000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7757.t1 is derived from g12428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6072371	6072899	.	-	.	Ledus.S5G053500
Ledus.S5	AUGUSTUS	transcript	6072371	6072899	.	-	.	transcript_id "Ledus.S5G053500.t1"; gene_id "Ledus.S5G053500"
Ledus.S5	AUGUSTUS	stop_codon	6072368	6072370	.	-	0	transcript_id "Ledus.S5G053500.t1"; gene_id "Ledus.S5G053500"
Ledus.S5	AUGUSTUS	CDS	6072371	6072388	0.96	-	0	transcript_id "Ledus.S5G053500.t1"; gene_id "Ledus.S5G053500"
Ledus.S5	AUGUSTUS	exon	6072371	6072388	.	-	.	transcript_id "Ledus.S5G053500.t1"; gene_id "Ledus.S5G053500"
Ledus.S5	AUGUSTUS	intron	6072389	6072659	.	-	.	transcript_id "Ledus.S5G053500.t1"; gene_id "Ledus.S5G053500"
Ledus.S5	AUGUSTUS	CDS	6072660	6072899	0.68	-	0	transcript_id "Ledus.S5G053500.t1"; gene_id "Ledus.S5G053500"
Ledus.S5	AUGUSTUS	exon	6072660	6072899	.	-	.	transcript_id "Ledus.S5G053500.t1"; gene_id "Ledus.S5G053500"
Ledus.S5	AUGUSTUS	start_codon	6072897	6072899	.	-	0	transcript_id "Ledus.S5G053500.t1"; gene_id "Ledus.S5G053500"
# This transcript jg10751.t2 is derived from g11782.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10752.t1 is derived from g11783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17491466	17493304	.	+	.	Ledus.S3G222900
Ledus.S3	AUGUSTUS	transcript	17491466	17493304	.	+	.	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	start_codon	17491466	17491468	.	+	0	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	CDS	17491466	17491771	0.95	+	0	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	exon	17491466	17491771	.	+	.	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	intron	17491772	17491869	.	+	.	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	CDS	17491870	17492246	0.77	+	0	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	exon	17491870	17492246	.	+	.	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	intron	17492247	17492572	.	+	.	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	CDS	17492573	17492738	0.98	+	1	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	exon	17492573	17492738	.	+	.	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	intron	17492739	17492872	.	+	.	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	CDS	17492873	17493073	1	+	0	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	exon	17492873	17493073	.	+	.	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	intron	17493074	17493150	.	+	.	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	CDS	17493151	17493200	1	+	0	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	exon	17493151	17493200	.	+	.	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	intron	17493201	17493303	.	+	.	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	CDS	17493304	17493304	0.98	+	1	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	exon	17493304	17493304	.	+	.	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
Ledus.S3	AUGUSTUS	stop_codon	17493305	17493307	.	+	0	transcript_id "Ledus.S3G222900.t1"; gene_id "Ledus.S3G222900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12865.t1 is derived from g4438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	92623	93176	.	-	.	Ledus.C10G000800
Ledus.C10	AUGUSTUS	transcript	92623	93176	.	-	.	transcript_id "Ledus.C10G000800.t1"; gene_id "Ledus.C10G000800"
Ledus.C10	AUGUSTUS	stop_codon	92620	92622	.	-	0	transcript_id "Ledus.C10G000800.t1"; gene_id "Ledus.C10G000800"
Ledus.C10	AUGUSTUS	CDS	92623	92885	0.95	-	2	transcript_id "Ledus.C10G000800.t1"; gene_id "Ledus.C10G000800"
Ledus.C10	AUGUSTUS	exon	92623	92885	.	-	.	transcript_id "Ledus.C10G000800.t1"; gene_id "Ledus.C10G000800"
Ledus.C10	AUGUSTUS	intron	92886	92980	.	-	.	transcript_id "Ledus.C10G000800.t1"; gene_id "Ledus.C10G000800"
Ledus.C10	AUGUSTUS	CDS	92981	93176	0.81	-	0	transcript_id "Ledus.C10G000800.t1"; gene_id "Ledus.C10G000800"
Ledus.C10	AUGUSTUS	exon	92981	93176	.	-	.	transcript_id "Ledus.C10G000800.t1"; gene_id "Ledus.C10G000800"
Ledus.C10	AUGUSTUS	start_codon	93174	93176	.	-	0	transcript_id "Ledus.C10G000800.t1"; gene_id "Ledus.C10G000800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8534.t1 is derived from g9564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	71293	74207	.	+	.	Ledus.S3G001100
Ledus.S3	AUGUSTUS	transcript	71293	74207	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	start_codon	71293	71295	.	+	0	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	71293	71490	0.91	+	0	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	71293	71490	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	71491	71576	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	71577	71724	1	+	0	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	71577	71724	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	71725	71807	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	71808	71893	1	+	2	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	71808	71893	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	71894	71992	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	71993	72031	1	+	0	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	71993	72031	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	72032	72132	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	72133	72151	1	+	0	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	72133	72151	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	72152	72255	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	72256	72383	0.92	+	2	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	72256	72383	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	72384	72510	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	72511	72579	0.97	+	0	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	72511	72579	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	72580	72689	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	72690	72775	1	+	0	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	72690	72775	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	72776	72919	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	72920	73029	1	+	1	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	72920	73029	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	73030	73120	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	73121	73171	1	+	2	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	73121	73171	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	73172	73277	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	73278	73336	1	+	2	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	73278	73336	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	73337	73780	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	73781	73825	1	+	0	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	73781	73825	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	73826	73889	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	73890	73964	1	+	0	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	73890	73964	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	intron	73965	74057	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	CDS	74058	74207	1	+	0	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	exon	74058	74207	.	+	.	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
Ledus.S3	AUGUSTUS	stop_codon	74208	74210	.	+	0	transcript_id "Ledus.S3G001100.t1"; gene_id "Ledus.S3G001100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6864.t1 is derived from g4308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34806355	34808688	.	-	.	Ledus.S1G428500
Ledus.S1	AUGUSTUS	transcript	34806355	34808688	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	stop_codon	34806352	34806354	.	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34806355	34806459	0.69	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34806355	34806459	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	intron	34806460	34806540	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34806541	34806669	1	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34806541	34806669	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	intron	34806670	34806743	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34806744	34806833	1	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34806744	34806833	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	intron	34806834	34806917	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34806918	34806997	1	-	2	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34806918	34806997	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	intron	34806998	34807075	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34807076	34807156	1	-	2	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34807076	34807156	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	intron	34807157	34807267	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34807268	34807328	0.98	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34807268	34807328	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	intron	34807329	34807435	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34807436	34807555	0.81	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34807436	34807555	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	intron	34807556	34807705	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34807706	34807777	0.99	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34807706	34807777	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	intron	34807778	34807880	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34807881	34807931	0.98	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34807881	34807931	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	intron	34807932	34808009	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34808010	34808096	0.65	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34808010	34808096	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	intron	34808097	34808216	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34808217	34808324	0.99	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34808217	34808324	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	intron	34808325	34808400	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34808401	34808559	1	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34808401	34808559	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	intron	34808560	34808646	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	CDS	34808647	34808688	1	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	exon	34808647	34808688	.	-	.	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
Ledus.S1	AUGUSTUS	start_codon	34808686	34808688	.	-	0	transcript_id "Ledus.S1G428500.t1"; gene_id "Ledus.S1G428500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5773.t1 is derived from g3215.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26686546	26687226	.	+	.	Ledus.S1G319400
Ledus.S1	AUGUSTUS	transcript	26686546	26687226	.	+	.	transcript_id "Ledus.S1G319400.t1"; gene_id "Ledus.S1G319400"
Ledus.S1	AUGUSTUS	start_codon	26686546	26686548	.	+	0	transcript_id "Ledus.S1G319400.t1"; gene_id "Ledus.S1G319400"
Ledus.S1	AUGUSTUS	CDS	26686546	26686733	0.59	+	0	transcript_id "Ledus.S1G319400.t1"; gene_id "Ledus.S1G319400"
Ledus.S1	AUGUSTUS	exon	26686546	26686733	.	+	.	transcript_id "Ledus.S1G319400.t1"; gene_id "Ledus.S1G319400"
Ledus.S1	AUGUSTUS	intron	26686734	26686879	.	+	.	transcript_id "Ledus.S1G319400.t1"; gene_id "Ledus.S1G319400"
Ledus.S1	AUGUSTUS	CDS	26686880	26686967	0.34	+	1	transcript_id "Ledus.S1G319400.t1"; gene_id "Ledus.S1G319400"
Ledus.S1	AUGUSTUS	exon	26686880	26686967	.	+	.	transcript_id "Ledus.S1G319400.t1"; gene_id "Ledus.S1G319400"
Ledus.S1	AUGUSTUS	intron	26686968	26687202	.	+	.	transcript_id "Ledus.S1G319400.t1"; gene_id "Ledus.S1G319400"
Ledus.S1	AUGUSTUS	CDS	26687203	26687226	0.74	+	0	transcript_id "Ledus.S1G319400.t1"; gene_id "Ledus.S1G319400"
Ledus.S1	AUGUSTUS	exon	26687203	26687226	.	+	.	transcript_id "Ledus.S1G319400.t1"; gene_id "Ledus.S1G319400"
Ledus.S1	AUGUSTUS	stop_codon	26687227	26687229	.	+	0	transcript_id "Ledus.S1G319400.t1"; gene_id "Ledus.S1G319400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8503.t1 is derived from g13175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12314303	12321098	.	-	.	Ledus.S5G128100
Ledus.S5	AUGUSTUS	transcript	12314303	12321098	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	stop_codon	12314300	12314302	.	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12314303	12314311	1	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12314303	12314311	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12314312	12314401	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12314402	12314616	0.56	-	2	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12314402	12314616	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12314617	12314876	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12314877	12314956	0.36	-	1	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12314877	12314956	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12314957	12315220	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12315221	12315477	0.66	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12315221	12315477	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12315478	12315613	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12315614	12315757	1	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12315614	12315757	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12315758	12315856	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12315857	12315997	1	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12315857	12315997	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12315998	12316157	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12316158	12316328	1	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12316158	12316328	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12316329	12316442	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12316443	12316562	0.92	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12316443	12316562	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12316563	12316683	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12316684	12317043	0.98	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12316684	12317043	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12317044	12317153	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12317154	12318887	0.89	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12317154	12318887	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12318888	12319097	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12319098	12319223	1	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12319098	12319223	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12319224	12319350	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12319351	12319578	0.63	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12319351	12319578	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12319579	12319693	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12319694	12319850	1	-	1	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12319694	12319850	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12319851	12319979	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12319980	12320029	1	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12319980	12320029	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	intron	12320030	12320183	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	CDS	12320184	12321098	0.99	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	exon	12320184	12321098	.	-	.	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
Ledus.S5	AUGUSTUS	start_codon	12321096	12321098	.	-	0	transcript_id "Ledus.S5G128100.t1"; gene_id "Ledus.S5G128100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3022.t1 is derived from g457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5370271	5372753	.	-	.	Ledus.S1G044300
Ledus.S1	AUGUSTUS	transcript	5370271	5372753	.	-	.	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	stop_codon	5370268	5370270	.	-	0	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	CDS	5370271	5371095	1	-	0	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	exon	5370271	5371095	.	-	.	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	intron	5371096	5371512	.	-	.	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	CDS	5371513	5371975	1	-	1	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	exon	5371513	5371975	.	-	.	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	intron	5371976	5372143	.	-	.	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	CDS	5372144	5372542	0.85	-	1	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	exon	5372144	5372542	.	-	.	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	intron	5372543	5372638	.	-	.	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	CDS	5372639	5372664	0.85	-	0	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	exon	5372639	5372664	.	-	.	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	intron	5372665	5372741	.	-	.	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	CDS	5372742	5372753	0.86	-	0	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	exon	5372742	5372753	.	-	.	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
Ledus.S1	AUGUSTUS	start_codon	5372751	5372753	.	-	0	transcript_id "Ledus.S1G044300.t1"; gene_id "Ledus.S1G044300"
# This transcript jg3414.t2 is derived from g849.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3414.t3 is derived from g849.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3415.t1 is derived from g850.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8158391	8161113	.	+	.	Ledus.S1G083600
Ledus.S1	AUGUSTUS	transcript	8158391	8161113	.	+	.	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	start_codon	8158391	8158393	.	+	0	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	CDS	8158391	8159951	0.99	+	0	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	exon	8158391	8159951	.	+	.	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	intron	8159952	8160122	.	+	.	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	CDS	8160123	8160235	1	+	2	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	exon	8160123	8160235	.	+	.	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	intron	8160236	8160446	.	+	.	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	CDS	8160447	8160548	1	+	0	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	exon	8160447	8160548	.	+	.	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	intron	8160549	8160684	.	+	.	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	CDS	8160685	8160771	1	+	0	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	exon	8160685	8160771	.	+	.	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	intron	8160772	8160845	.	+	.	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	CDS	8160846	8160950	1	+	0	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	exon	8160846	8160950	.	+	.	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	intron	8160951	8161035	.	+	.	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	CDS	8161036	8161113	0.59	+	0	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	exon	8161036	8161113	.	+	.	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
Ledus.S1	AUGUSTUS	stop_codon	8161114	8161116	.	+	0	transcript_id "Ledus.S1G083600.t1"; gene_id "Ledus.S1G083600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4435.t1 is derived from g1871.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17101490	17105673	.	-	.	Ledus.S1G185600
Ledus.S1	AUGUSTUS	transcript	17101490	17105673	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	stop_codon	17101487	17101489	.	-	0	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17101490	17101590	0.96	-	2	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17101490	17101590	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17101591	17101937	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17101938	17101959	0.46	-	0	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17101938	17101959	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17101960	17102190	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17102191	17102295	0.41	-	0	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17102191	17102295	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17102296	17102439	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17102440	17102489	0.99	-	2	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17102440	17102489	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17102490	17103090	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17103091	17103245	1	-	1	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17103091	17103245	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17103246	17103370	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17103371	17103543	1	-	0	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17103371	17103543	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17103544	17103689	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17103690	17103824	1	-	0	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17103690	17103824	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17103825	17103946	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17103947	17104028	1	-	1	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17103947	17104028	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17104029	17104932	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17104933	17105188	1	-	2	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17104933	17105188	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17105189	17105355	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17105356	17105375	0.99	-	1	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17105356	17105375	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17105376	17105584	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17105585	17105673	0.43	-	0	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17105585	17105673	.	-	.	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	start_codon	17105671	17105673	.	-	0	transcript_id "Ledus.S1G185600.t1"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	transcript	17101490	17104176	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	stop_codon	17101487	17101489	.	-	0	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17101490	17101590	0.99	-	2	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17101490	17101590	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17101591	17101937	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17101938	17101959	0.43	-	0	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17101938	17101959	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17101960	17102190	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17102191	17102295	0.38	-	0	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17102191	17102295	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17102296	17102439	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17102440	17102489	0.96	-	2	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17102440	17102489	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17102490	17103090	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17103091	17103245	0.97	-	1	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17103091	17103245	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17103246	17103370	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17103371	17103543	1	-	0	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17103371	17103543	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17103544	17103689	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17103690	17103824	0.98	-	0	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17103690	17103824	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17103825	17103946	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17103947	17104028	0.98	-	1	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17103947	17104028	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	intron	17104029	17104129	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	CDS	17104130	17104176	0.86	-	0	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	exon	17104130	17104176	.	-	.	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
Ledus.S1	AUGUSTUS	start_codon	17104174	17104176	.	-	0	transcript_id "Ledus.S1G185600.t2"; gene_id "Ledus.S1G185600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11397.t1 is derived from g5015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4002652	4003326	.	-	.	Ledus.S4G055300
Ledus.S4	AUGUSTUS	transcript	4002652	4003326	.	-	.	transcript_id "Ledus.S4G055300.t1"; gene_id "Ledus.S4G055300"
Ledus.S4	AUGUSTUS	stop_codon	4002649	4002651	.	-	0	transcript_id "Ledus.S4G055300.t1"; gene_id "Ledus.S4G055300"
Ledus.S4	AUGUSTUS	CDS	4002652	4003326	0.59	-	0	transcript_id "Ledus.S4G055300.t1"; gene_id "Ledus.S4G055300"
Ledus.S4	AUGUSTUS	exon	4002652	4003326	.	-	.	transcript_id "Ledus.S4G055300.t1"; gene_id "Ledus.S4G055300"
Ledus.S4	AUGUSTUS	start_codon	4003324	4003326	.	-	0	transcript_id "Ledus.S4G055300.t1"; gene_id "Ledus.S4G055300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7327.t1 is derived from g11998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1194293	1195891	.	+	.	Ledus.S5G010500
Ledus.S5	AUGUSTUS	transcript	1194293	1195891	.	+	.	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	start_codon	1194293	1194295	.	+	0	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	CDS	1194293	1194872	0.47	+	0	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	exon	1194293	1194872	.	+	.	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	intron	1194873	1194990	.	+	.	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	CDS	1194991	1195119	0.91	+	2	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	exon	1194991	1195119	.	+	.	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	intron	1195120	1195216	.	+	.	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	CDS	1195217	1195427	0.95	+	2	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	exon	1195217	1195427	.	+	.	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	intron	1195428	1195576	.	+	.	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	CDS	1195577	1195657	1	+	1	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	exon	1195577	1195657	.	+	.	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	intron	1195658	1195731	.	+	.	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	CDS	1195732	1195891	1	+	1	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	exon	1195732	1195891	.	+	.	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
Ledus.S5	AUGUSTUS	stop_codon	1195892	1195894	.	+	0	transcript_id "Ledus.S5G010500.t1"; gene_id "Ledus.S5G010500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12732.t1 is derived from g6354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14128314	14129051	.	-	.	Ledus.S4G188800
Ledus.S4	AUGUSTUS	transcript	14128314	14129051	.	-	.	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	stop_codon	14128311	14128313	.	-	0	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	CDS	14128314	14128406	1	-	0	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	exon	14128314	14128406	.	-	.	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	intron	14128407	14128488	.	-	.	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	CDS	14128489	14128596	1	-	0	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	exon	14128489	14128596	.	-	.	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	intron	14128597	14128685	.	-	.	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	CDS	14128686	14128846	1	-	2	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	exon	14128686	14128846	.	-	.	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	intron	14128847	14128912	.	-	.	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	CDS	14128913	14129051	0.97	-	0	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	exon	14128913	14129051	.	-	.	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
Ledus.S4	AUGUSTUS	start_codon	14129049	14129051	.	-	0	transcript_id "Ledus.S4G188800.t1"; gene_id "Ledus.S4G188800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6279.t1 is derived from g3722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30100469	30103365	.	+	.	Ledus.S1G370000
Ledus.S1	AUGUSTUS	transcript	30100469	30103365	.	+	.	transcript_id "Ledus.S1G370000.t1"; gene_id "Ledus.S1G370000"
Ledus.S1	AUGUSTUS	start_codon	30100469	30100471	.	+	0	transcript_id "Ledus.S1G370000.t1"; gene_id "Ledus.S1G370000"
Ledus.S1	AUGUSTUS	CDS	30100469	30100543	0.55	+	0	transcript_id "Ledus.S1G370000.t1"; gene_id "Ledus.S1G370000"
Ledus.S1	AUGUSTUS	exon	30100469	30100543	.	+	.	transcript_id "Ledus.S1G370000.t1"; gene_id "Ledus.S1G370000"
Ledus.S1	AUGUSTUS	intron	30100544	30100725	.	+	.	transcript_id "Ledus.S1G370000.t1"; gene_id "Ledus.S1G370000"
Ledus.S1	AUGUSTUS	CDS	30100726	30100813	1	+	0	transcript_id "Ledus.S1G370000.t1"; gene_id "Ledus.S1G370000"
Ledus.S1	AUGUSTUS	exon	30100726	30100813	.	+	.	transcript_id "Ledus.S1G370000.t1"; gene_id "Ledus.S1G370000"
Ledus.S1	AUGUSTUS	intron	30100814	30100927	.	+	.	transcript_id "Ledus.S1G370000.t1"; gene_id "Ledus.S1G370000"
Ledus.S1	AUGUSTUS	CDS	30100928	30103365	0.78	+	2	transcript_id "Ledus.S1G370000.t1"; gene_id "Ledus.S1G370000"
Ledus.S1	AUGUSTUS	exon	30100928	30103365	.	+	.	transcript_id "Ledus.S1G370000.t1"; gene_id "Ledus.S1G370000"
Ledus.S1	AUGUSTUS	stop_codon	30103366	30103368	.	+	0	transcript_id "Ledus.S1G370000.t1"; gene_id "Ledus.S1G370000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7517.t1 is derived from g12188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3551447	3552376	.	-	.	Ledus.S5G029500
Ledus.S5	AUGUSTUS	transcript	3551447	3552376	.	-	.	transcript_id "Ledus.S5G029500.t1"; gene_id "Ledus.S5G029500"
Ledus.S5	AUGUSTUS	stop_codon	3551444	3551446	.	-	0	transcript_id "Ledus.S5G029500.t1"; gene_id "Ledus.S5G029500"
Ledus.S5	AUGUSTUS	CDS	3551447	3551448	1	-	2	transcript_id "Ledus.S5G029500.t1"; gene_id "Ledus.S5G029500"
Ledus.S5	AUGUSTUS	exon	3551447	3551448	.	-	.	transcript_id "Ledus.S5G029500.t1"; gene_id "Ledus.S5G029500"
Ledus.S5	AUGUSTUS	intron	3551449	3551598	.	-	.	transcript_id "Ledus.S5G029500.t1"; gene_id "Ledus.S5G029500"
Ledus.S5	AUGUSTUS	CDS	3551599	3551656	1	-	0	transcript_id "Ledus.S5G029500.t1"; gene_id "Ledus.S5G029500"
Ledus.S5	AUGUSTUS	exon	3551599	3551656	.	-	.	transcript_id "Ledus.S5G029500.t1"; gene_id "Ledus.S5G029500"
Ledus.S5	AUGUSTUS	intron	3551657	3551746	.	-	.	transcript_id "Ledus.S5G029500.t1"; gene_id "Ledus.S5G029500"
Ledus.S5	AUGUSTUS	CDS	3551747	3552376	0.76	-	0	transcript_id "Ledus.S5G029500.t1"; gene_id "Ledus.S5G029500"
Ledus.S5	AUGUSTUS	exon	3551747	3552376	.	-	.	transcript_id "Ledus.S5G029500.t1"; gene_id "Ledus.S5G029500"
Ledus.S5	AUGUSTUS	start_codon	3552374	3552376	.	-	0	transcript_id "Ledus.S5G029500.t1"; gene_id "Ledus.S5G029500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7098.t1 is derived from g6629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1536199	1537682	.	+	.	Ledus.C7G015900
Ledus.C7	AUGUSTUS	transcript	1536199	1537682	.	+	.	transcript_id "Ledus.C7G015900.t1"; gene_id "Ledus.C7G015900"
Ledus.C7	AUGUSTUS	start_codon	1536199	1536201	.	+	0	transcript_id "Ledus.C7G015900.t1"; gene_id "Ledus.C7G015900"
Ledus.C7	AUGUSTUS	CDS	1536199	1537096	1	+	0	transcript_id "Ledus.C7G015900.t1"; gene_id "Ledus.C7G015900"
Ledus.C7	AUGUSTUS	exon	1536199	1537096	.	+	.	transcript_id "Ledus.C7G015900.t1"; gene_id "Ledus.C7G015900"
Ledus.C7	AUGUSTUS	intron	1537097	1537179	.	+	.	transcript_id "Ledus.C7G015900.t1"; gene_id "Ledus.C7G015900"
Ledus.C7	AUGUSTUS	CDS	1537180	1537682	0.97	+	2	transcript_id "Ledus.C7G015900.t1"; gene_id "Ledus.C7G015900"
Ledus.C7	AUGUSTUS	exon	1537180	1537682	.	+	.	transcript_id "Ledus.C7G015900.t1"; gene_id "Ledus.C7G015900"
Ledus.C7	AUGUSTUS	stop_codon	1537683	1537685	.	+	0	transcript_id "Ledus.C7G015900.t1"; gene_id "Ledus.C7G015900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7110.t1 is derived from g6641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1604824	1605129	.	+	.	Ledus.C7G017100
Ledus.C7	AUGUSTUS	transcript	1604824	1605129	.	+	.	transcript_id "Ledus.C7G017100.t1"; gene_id "Ledus.C7G017100"
Ledus.C7	AUGUSTUS	start_codon	1604824	1604826	.	+	0	transcript_id "Ledus.C7G017100.t1"; gene_id "Ledus.C7G017100"
Ledus.C7	AUGUSTUS	CDS	1604824	1605129	0.98	+	0	transcript_id "Ledus.C7G017100.t1"; gene_id "Ledus.C7G017100"
Ledus.C7	AUGUSTUS	exon	1604824	1605129	.	+	.	transcript_id "Ledus.C7G017100.t1"; gene_id "Ledus.C7G017100"
Ledus.C7	AUGUSTUS	stop_codon	1605130	1605132	.	+	0	transcript_id "Ledus.C7G017100.t1"; gene_id "Ledus.C7G017100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4426.t1 is derived from g1862.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17056074	17056664	.	-	.	Ledus.S1G184700
Ledus.S1	AUGUSTUS	transcript	17056074	17056664	.	-	.	transcript_id "Ledus.S1G184700.t1"; gene_id "Ledus.S1G184700"
Ledus.S1	AUGUSTUS	stop_codon	17056071	17056073	.	-	0	transcript_id "Ledus.S1G184700.t1"; gene_id "Ledus.S1G184700"
Ledus.S1	AUGUSTUS	CDS	17056074	17056664	0.73	-	0	transcript_id "Ledus.S1G184700.t1"; gene_id "Ledus.S1G184700"
Ledus.S1	AUGUSTUS	exon	17056074	17056664	.	-	.	transcript_id "Ledus.S1G184700.t1"; gene_id "Ledus.S1G184700"
Ledus.S1	AUGUSTUS	start_codon	17056662	17056664	.	-	0	transcript_id "Ledus.S1G184700.t1"; gene_id "Ledus.S1G184700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7024.t1 is derived from g6555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	871910	872947	.	+	.	Ledus.C7G008500
Ledus.C7	AUGUSTUS	transcript	871910	872947	.	+	.	transcript_id "Ledus.C7G008500.t1"; gene_id "Ledus.C7G008500"
Ledus.C7	AUGUSTUS	start_codon	871910	871912	.	+	0	transcript_id "Ledus.C7G008500.t1"; gene_id "Ledus.C7G008500"
Ledus.C7	AUGUSTUS	CDS	871910	872218	0.52	+	0	transcript_id "Ledus.C7G008500.t1"; gene_id "Ledus.C7G008500"
Ledus.C7	AUGUSTUS	exon	871910	872218	.	+	.	transcript_id "Ledus.C7G008500.t1"; gene_id "Ledus.C7G008500"
Ledus.C7	AUGUSTUS	intron	872219	872728	.	+	.	transcript_id "Ledus.C7G008500.t1"; gene_id "Ledus.C7G008500"
Ledus.C7	AUGUSTUS	CDS	872729	872947	0.86	+	0	transcript_id "Ledus.C7G008500.t1"; gene_id "Ledus.C7G008500"
Ledus.C7	AUGUSTUS	exon	872729	872947	.	+	.	transcript_id "Ledus.C7G008500.t1"; gene_id "Ledus.C7G008500"
Ledus.C7	AUGUSTUS	stop_codon	872948	872950	.	+	0	transcript_id "Ledus.C7G008500.t1"; gene_id "Ledus.C7G008500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4710.t1 is derived from g2148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19180079	19185088	.	+	.	Ledus.S1G213100
Ledus.S1	AUGUSTUS	transcript	19180079	19185088	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	start_codon	19180079	19180081	.	+	0	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	CDS	19180079	19180711	0.55	+	0	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	exon	19180079	19180711	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	intron	19180712	19180832	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	CDS	19180833	19180988	0.98	+	0	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	exon	19180833	19180988	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	intron	19180989	19181095	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	CDS	19181096	19181200	0.93	+	0	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	exon	19181096	19181200	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	intron	19181201	19181313	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	CDS	19181314	19181424	0.95	+	0	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	exon	19181314	19181424	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	intron	19181425	19181543	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	CDS	19181544	19184471	1	+	0	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	exon	19181544	19184471	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	intron	19184472	19184585	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	CDS	19184586	19184916	0.9	+	0	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	exon	19184586	19184916	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	intron	19184917	19185032	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	CDS	19185033	19185088	0.89	+	2	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	exon	19185033	19185088	.	+	.	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
Ledus.S1	AUGUSTUS	stop_codon	19185089	19185091	.	+	0	transcript_id "Ledus.S1G213100.t1"; gene_id "Ledus.S1G213100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg173.t1 is derived from g7034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	532221	533146	.	+	.	Ledus.S2G005500
Ledus.S2	AUGUSTUS	transcript	532221	533146	.	+	.	transcript_id "Ledus.S2G005500.t1"; gene_id "Ledus.S2G005500"
Ledus.S2	AUGUSTUS	start_codon	532221	532223	.	+	0	transcript_id "Ledus.S2G005500.t1"; gene_id "Ledus.S2G005500"
Ledus.S2	AUGUSTUS	CDS	532221	532403	0.83	+	0	transcript_id "Ledus.S2G005500.t1"; gene_id "Ledus.S2G005500"
Ledus.S2	AUGUSTUS	exon	532221	532403	.	+	.	transcript_id "Ledus.S2G005500.t1"; gene_id "Ledus.S2G005500"
Ledus.S2	AUGUSTUS	intron	532404	532874	.	+	.	transcript_id "Ledus.S2G005500.t1"; gene_id "Ledus.S2G005500"
Ledus.S2	AUGUSTUS	CDS	532875	532943	1	+	0	transcript_id "Ledus.S2G005500.t1"; gene_id "Ledus.S2G005500"
Ledus.S2	AUGUSTUS	exon	532875	532943	.	+	.	transcript_id "Ledus.S2G005500.t1"; gene_id "Ledus.S2G005500"
Ledus.S2	AUGUSTUS	intron	532944	533086	.	+	.	transcript_id "Ledus.S2G005500.t1"; gene_id "Ledus.S2G005500"
Ledus.S2	AUGUSTUS	CDS	533087	533146	0.99	+	0	transcript_id "Ledus.S2G005500.t1"; gene_id "Ledus.S2G005500"
Ledus.S2	AUGUSTUS	exon	533087	533146	.	+	.	transcript_id "Ledus.S2G005500.t1"; gene_id "Ledus.S2G005500"
Ledus.S2	AUGUSTUS	stop_codon	533147	533149	.	+	0	transcript_id "Ledus.S2G005500.t1"; gene_id "Ledus.S2G005500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3529.t1 is derived from g965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9195221	9197245	.	+	.	Ledus.S1G095000
Ledus.S1	AUGUSTUS	transcript	9195221	9197245	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	start_codon	9195221	9195223	.	+	0	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	CDS	9195221	9195440	0.79	+	0	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	exon	9195221	9195440	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	intron	9195441	9195537	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	CDS	9195538	9195869	0.94	+	2	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	exon	9195538	9195869	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	intron	9195870	9195974	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	CDS	9195975	9196133	1	+	0	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	exon	9195975	9196133	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	intron	9196134	9196220	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	CDS	9196221	9196415	1	+	0	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	exon	9196221	9196415	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	intron	9196416	9196503	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	CDS	9196504	9196638	1	+	0	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	exon	9196504	9196638	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	intron	9196639	9196730	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	CDS	9196731	9196963	1	+	0	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	exon	9196731	9196963	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	intron	9196964	9197055	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	CDS	9197056	9197245	1	+	1	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	exon	9197056	9197245	.	+	.	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
Ledus.S1	AUGUSTUS	stop_codon	9197246	9197248	.	+	0	transcript_id "Ledus.S1G095000.t1"; gene_id "Ledus.S1G095000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12792.t1 is derived from g6414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14569600	14570046	.	-	.	Ledus.S4G194800
Ledus.S4	AUGUSTUS	transcript	14569600	14570046	.	-	.	transcript_id "Ledus.S4G194800.t1"; gene_id "Ledus.S4G194800"
Ledus.S4	AUGUSTUS	stop_codon	14569597	14569599	.	-	0	transcript_id "Ledus.S4G194800.t1"; gene_id "Ledus.S4G194800"
Ledus.S4	AUGUSTUS	CDS	14569600	14570046	0.43	-	0	transcript_id "Ledus.S4G194800.t1"; gene_id "Ledus.S4G194800"
Ledus.S4	AUGUSTUS	exon	14569600	14570046	.	-	.	transcript_id "Ledus.S4G194800.t1"; gene_id "Ledus.S4G194800"
Ledus.S4	AUGUSTUS	start_codon	14570044	14570046	.	-	0	transcript_id "Ledus.S4G194800.t1"; gene_id "Ledus.S4G194800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2044.t1 is derived from g8907.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14309287	14311524	.	-	.	Ledus.S2G192600
Ledus.S2	AUGUSTUS	transcript	14310593	14311524	.	-	.	transcript_id "Ledus.S2G192600.t1"; gene_id "Ledus.S2G192600"
Ledus.S2	AUGUSTUS	stop_codon	14310590	14310592	.	-	0	transcript_id "Ledus.S2G192600.t1"; gene_id "Ledus.S2G192600"
Ledus.S2	AUGUSTUS	CDS	14310593	14310599	0.5	-	1	transcript_id "Ledus.S2G192600.t1"; gene_id "Ledus.S2G192600"
Ledus.S2	AUGUSTUS	exon	14310593	14310599	.	-	.	transcript_id "Ledus.S2G192600.t1"; gene_id "Ledus.S2G192600"
Ledus.S2	AUGUSTUS	intron	14310600	14310691	.	-	.	transcript_id "Ledus.S2G192600.t1"; gene_id "Ledus.S2G192600"
Ledus.S2	AUGUSTUS	CDS	14310692	14311524	0.7	-	0	transcript_id "Ledus.S2G192600.t1"; gene_id "Ledus.S2G192600"
Ledus.S2	AUGUSTUS	exon	14310692	14311524	.	-	.	transcript_id "Ledus.S2G192600.t1"; gene_id "Ledus.S2G192600"
Ledus.S2	AUGUSTUS	start_codon	14311522	14311524	.	-	0	transcript_id "Ledus.S2G192600.t1"; gene_id "Ledus.S2G192600"
Ledus.S2	AUGUSTUS	transcript	14309287	14311524	.	-	.	transcript_id "Ledus.S2G192600.t2"; gene_id "Ledus.S2G192600"
Ledus.S2	AUGUSTUS	stop_codon	14309284	14309286	.	-	0	transcript_id "Ledus.S2G192600.t2"; gene_id "Ledus.S2G192600"
Ledus.S2	AUGUSTUS	CDS	14309287	14311524	0.95	-	0	transcript_id "Ledus.S2G192600.t2"; gene_id "Ledus.S2G192600"
Ledus.S2	AUGUSTUS	exon	14309287	14311524	.	-	.	transcript_id "Ledus.S2G192600.t2"; gene_id "Ledus.S2G192600"
Ledus.S2	AUGUSTUS	start_codon	14311522	14311524	.	-	0	transcript_id "Ledus.S2G192600.t2"; gene_id "Ledus.S2G192600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2542.t1 is derived from g9405.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18805468	18808616	.	-	.	Ledus.S2G242400
Ledus.S2	AUGUSTUS	transcript	18805468	18808616	.	-	.	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	stop_codon	18805465	18805467	.	-	0	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	CDS	18805468	18805524	0.98	-	0	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	exon	18805468	18805524	.	-	.	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	intron	18805525	18805621	.	-	.	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	CDS	18805622	18805821	1	-	2	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	exon	18805622	18805821	.	-	.	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	intron	18805822	18805887	.	-	.	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	CDS	18805888	18805988	0.98	-	1	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	exon	18805888	18805988	.	-	.	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	intron	18805989	18806077	.	-	.	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	CDS	18806078	18807459	0.77	-	0	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	exon	18806078	18807459	.	-	.	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	intron	18807460	18808286	.	-	.	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	CDS	18808287	18808616	0.96	-	0	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	exon	18808287	18808616	.	-	.	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	start_codon	18808614	18808616	.	-	0	transcript_id "Ledus.S2G242400.t1"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	transcript	18805468	18808616	.	-	.	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	stop_codon	18805465	18805467	.	-	0	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	CDS	18805468	18805527	0.97	-	0	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	exon	18805468	18805527	.	-	.	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	intron	18805528	18805621	.	-	.	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	CDS	18805622	18805821	0.97	-	2	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	exon	18805622	18805821	.	-	.	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	intron	18805822	18805887	.	-	.	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	CDS	18805888	18805988	0.95	-	1	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	exon	18805888	18805988	.	-	.	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	intron	18805989	18806077	.	-	.	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	CDS	18806078	18807459	0.72	-	0	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	exon	18806078	18807459	.	-	.	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	intron	18807460	18808286	.	-	.	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	CDS	18808287	18808616	0.96	-	0	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	exon	18808287	18808616	.	-	.	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
Ledus.S2	AUGUSTUS	start_codon	18808614	18808616	.	-	0	transcript_id "Ledus.S2G242400.t2"; gene_id "Ledus.S2G242400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5996.t1 is derived from g3439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28193223	28196145	.	+	.	Ledus.S1G341700
Ledus.S1	AUGUSTUS	transcript	28193223	28196145	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	start_codon	28193223	28193225	.	+	0	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28193223	28193342	0.96	+	0	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28193223	28193342	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28193343	28193444	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28193445	28193478	1	+	0	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28193445	28193478	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28193479	28193553	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28193554	28193609	1	+	2	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28193554	28193609	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28193610	28193689	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28193690	28193821	1	+	0	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28193690	28193821	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28193822	28193911	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28193912	28193967	0.9	+	0	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28193912	28193967	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28193968	28194162	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28194163	28194252	0.98	+	1	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28194163	28194252	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28194253	28194337	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28194338	28194404	1	+	1	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28194338	28194404	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28194405	28194494	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28194495	28194604	1	+	0	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28194495	28194604	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28194605	28194685	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28194686	28194813	0.97	+	1	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28194686	28194813	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28194814	28194918	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28194919	28195029	1	+	2	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28194919	28195029	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28195030	28195122	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28195123	28195184	0.97	+	2	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28195123	28195184	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28195185	28195295	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28195296	28195348	0.97	+	0	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28195296	28195348	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28195349	28195439	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28195440	28195515	1	+	1	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28195440	28195515	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28195516	28195598	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28195599	28195727	0.97	+	0	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28195599	28195727	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	intron	28195728	28195950	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	CDS	28195951	28196145	0.59	+	0	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	exon	28195951	28196145	.	+	.	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
Ledus.S1	AUGUSTUS	stop_codon	28196146	28196148	.	+	0	transcript_id "Ledus.S1G341700.t1"; gene_id "Ledus.S1G341700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg613.t1 is derived from g7474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3652287	3652733	.	+	.	Ledus.S2G049500
Ledus.S2	AUGUSTUS	transcript	3652287	3652733	.	+	.	transcript_id "Ledus.S2G049500.t1"; gene_id "Ledus.S2G049500"
Ledus.S2	AUGUSTUS	start_codon	3652287	3652289	.	+	0	transcript_id "Ledus.S2G049500.t1"; gene_id "Ledus.S2G049500"
Ledus.S2	AUGUSTUS	CDS	3652287	3652733	0.72	+	0	transcript_id "Ledus.S2G049500.t1"; gene_id "Ledus.S2G049500"
Ledus.S2	AUGUSTUS	exon	3652287	3652733	.	+	.	transcript_id "Ledus.S2G049500.t1"; gene_id "Ledus.S2G049500"
Ledus.S2	AUGUSTUS	stop_codon	3652734	3652736	.	+	0	transcript_id "Ledus.S2G049500.t1"; gene_id "Ledus.S2G049500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5940.t1 is derived from g3383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27939868	27940601	.	-	.	Ledus.S1G336100
Ledus.S1	AUGUSTUS	transcript	27939868	27940601	.	-	.	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	stop_codon	27939865	27939867	.	-	0	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	CDS	27939868	27939993	0.6	-	0	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	exon	27939868	27939993	.	-	.	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	intron	27939994	27940095	.	-	.	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	CDS	27940096	27940140	0.75	-	0	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	exon	27940096	27940140	.	-	.	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	intron	27940141	27940242	.	-	.	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	CDS	27940243	27940343	0.99	-	2	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	exon	27940243	27940343	.	-	.	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	intron	27940344	27940456	.	-	.	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	CDS	27940457	27940601	1	-	0	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	exon	27940457	27940601	.	-	.	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
Ledus.S1	AUGUSTUS	start_codon	27940599	27940601	.	-	0	transcript_id "Ledus.S1G336100.t1"; gene_id "Ledus.S1G336100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3102.t1 is derived from g537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5850952	5856085	.	-	.	Ledus.S1G052300
Ledus.S1	AUGUSTUS	transcript	5850952	5856085	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	stop_codon	5850949	5850951	.	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5850952	5851773	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5850952	5851773	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5851774	5851869	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5851870	5852076	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5851870	5852076	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5852077	5852144	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5852145	5852271	1	-	1	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5852145	5852271	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5852272	5852356	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5852357	5852436	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5852357	5852436	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5852437	5852523	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5852524	5852622	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5852524	5852622	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5852623	5852708	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5852709	5852855	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5852709	5852855	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5852856	5852929	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5852930	5853031	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5852930	5853031	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5853032	5853101	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5853102	5853227	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5853102	5853227	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5853228	5853318	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5853319	5853630	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5853319	5853630	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5853631	5853711	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5853712	5853776	1	-	2	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5853712	5853776	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5853777	5853899	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5853900	5854043	1	-	2	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5853900	5854043	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5854044	5854132	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5854133	5854277	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5854133	5854277	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5854278	5854368	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5854369	5854464	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5854369	5854464	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5854465	5854555	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5854556	5854632	1	-	2	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5854556	5854632	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5854633	5854712	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5854713	5854791	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5854713	5854791	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5854792	5854882	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5854883	5854951	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5854883	5854951	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5854952	5855030	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5855031	5855108	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5855031	5855108	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5855109	5855190	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5855191	5855305	1	-	1	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5855191	5855305	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5855306	5855401	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5855402	5855565	1	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5855402	5855565	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5855566	5855654	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5855655	5855878	1	-	2	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5855655	5855878	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	intron	5855879	5856042	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	CDS	5856043	5856085	0.9	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	exon	5856043	5856085	.	-	.	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
Ledus.S1	AUGUSTUS	start_codon	5856083	5856085	.	-	0	transcript_id "Ledus.S1G052300.t1"; gene_id "Ledus.S1G052300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5954.t1 is derived from g3397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28033424	28035515	.	+	.	Ledus.S1G337500
Ledus.S1	AUGUSTUS	transcript	28033424	28035515	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	start_codon	28033424	28033426	.	+	0	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	CDS	28033424	28033677	1	+	0	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	exon	28033424	28033677	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	intron	28033678	28033805	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	CDS	28033806	28033954	1	+	1	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	exon	28033806	28033954	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	intron	28033955	28034047	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	CDS	28034048	28034184	1	+	2	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	exon	28034048	28034184	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	intron	28034185	28034369	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	CDS	28034370	28034472	1	+	0	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	exon	28034370	28034472	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	intron	28034473	28034624	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	CDS	28034625	28034743	1	+	2	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	exon	28034625	28034743	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	intron	28034744	28034820	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	CDS	28034821	28034885	1	+	0	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	exon	28034821	28034885	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	intron	28034886	28034985	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	CDS	28034986	28035208	1	+	1	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	exon	28034986	28035208	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	intron	28035209	28035296	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	CDS	28035297	28035515	1	+	0	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	exon	28035297	28035515	.	+	.	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
Ledus.S1	AUGUSTUS	stop_codon	28035516	28035518	.	+	0	transcript_id "Ledus.S1G337500.t1"; gene_id "Ledus.S1G337500"
# This transcript jg13158.t2 is derived from g6968.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13159.t1 is derived from g6969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7691634	7691930	.	-	.	Ledus.S6G022100
Ledus.S6	AUGUSTUS	transcript	7691634	7691930	.	-	.	transcript_id "Ledus.S6G022100.t1"; gene_id "Ledus.S6G022100"
Ledus.S6	AUGUSTUS	stop_codon	7691631	7691633	.	-	0	transcript_id "Ledus.S6G022100.t1"; gene_id "Ledus.S6G022100"
Ledus.S6	AUGUSTUS	CDS	7691634	7691930	0.97	-	0	transcript_id "Ledus.S6G022100.t1"; gene_id "Ledus.S6G022100"
Ledus.S6	AUGUSTUS	exon	7691634	7691930	.	-	.	transcript_id "Ledus.S6G022100.t1"; gene_id "Ledus.S6G022100"
Ledus.S6	AUGUSTUS	start_codon	7691928	7691930	.	-	0	transcript_id "Ledus.S6G022100.t1"; gene_id "Ledus.S6G022100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12527.t1 is derived from g6148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12736680	12740057	.	+	.	Ledus.S4G168300
Ledus.S4	AUGUSTUS	transcript	12736680	12740057	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	start_codon	12736680	12736682	.	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12736680	12736793	0.36	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12736680	12736793	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12736794	12736974	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12736975	12737040	1	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12736975	12737040	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12737041	12737147	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12737148	12737234	1	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12737148	12737234	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12737235	12737334	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12737335	12737456	1	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12737335	12737456	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12737457	12737572	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12737573	12737649	1	+	1	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12737573	12737649	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12737650	12737743	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12737744	12737868	1	+	2	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12737744	12737868	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12737869	12738014	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12738015	12738107	0.99	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12738015	12738107	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12738108	12738210	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12738211	12738303	0.99	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12738211	12738303	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12738304	12738392	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12738393	12738590	0.81	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12738393	12738590	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12738591	12738701	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12738702	12738806	0.86	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12738702	12738806	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12738807	12738907	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12738908	12738973	1	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12738908	12738973	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12738974	12739098	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12739099	12739176	1	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12739099	12739176	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12739177	12739278	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12739279	12739390	1	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12739279	12739390	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12739391	12739675	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12739676	12739783	1	+	2	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12739676	12739783	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	intron	12739784	12739911	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	CDS	12739912	12740057	1	+	2	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	exon	12739912	12740057	.	+	.	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
Ledus.S4	AUGUSTUS	stop_codon	12740058	12740060	.	+	0	transcript_id "Ledus.S4G168300.t1"; gene_id "Ledus.S4G168300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5224.t1 is derived from g2663.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22565855	22567537	.	+	.	Ledus.S1G264500
Ledus.S1	AUGUSTUS	transcript	22565855	22567537	.	+	.	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	start_codon	22565855	22565857	.	+	0	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	CDS	22565855	22566607	0.88	+	0	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	exon	22565855	22566607	.	+	.	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	intron	22566608	22566699	.	+	.	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	CDS	22566700	22566819	0.99	+	0	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	exon	22566700	22566819	.	+	.	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	intron	22566820	22566890	.	+	.	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	CDS	22566891	22566953	0.98	+	0	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	exon	22566891	22566953	.	+	.	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	intron	22566954	22567522	.	+	.	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	CDS	22567523	22567537	0.98	+	0	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	exon	22567523	22567537	.	+	.	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
Ledus.S1	AUGUSTUS	stop_codon	22567538	22567540	.	+	0	transcript_id "Ledus.S1G264500.t1"; gene_id "Ledus.S1G264500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8799.t1 is derived from g9829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2039893	2041815	.	+	.	Ledus.S3G027600
Ledus.S3	AUGUSTUS	transcript	2039893	2041815	.	+	.	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	start_codon	2039893	2039895	.	+	0	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	CDS	2039893	2040501	0.88	+	0	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	exon	2039893	2040501	.	+	.	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	intron	2040502	2040615	.	+	.	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	CDS	2040616	2040783	1	+	0	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	exon	2040616	2040783	.	+	.	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	intron	2040784	2040880	.	+	.	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	CDS	2040881	2041193	1	+	0	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	exon	2040881	2041193	.	+	.	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	intron	2041194	2041449	.	+	.	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	CDS	2041450	2041576	1	+	2	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	exon	2041450	2041576	.	+	.	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	intron	2041577	2041718	.	+	.	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	CDS	2041719	2041815	1	+	1	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	exon	2041719	2041815	.	+	.	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
Ledus.S3	AUGUSTUS	stop_codon	2041816	2041818	.	+	0	transcript_id "Ledus.S3G027600.t1"; gene_id "Ledus.S3G027600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8417.t1 is derived from g13089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11547696	11548511	.	+	.	Ledus.S5G119500
Ledus.S5	AUGUSTUS	transcript	11547696	11548511	.	+	.	transcript_id "Ledus.S5G119500.t1"; gene_id "Ledus.S5G119500"
Ledus.S5	AUGUSTUS	start_codon	11547696	11547698	.	+	0	transcript_id "Ledus.S5G119500.t1"; gene_id "Ledus.S5G119500"
Ledus.S5	AUGUSTUS	CDS	11547696	11548511	1	+	0	transcript_id "Ledus.S5G119500.t1"; gene_id "Ledus.S5G119500"
Ledus.S5	AUGUSTUS	exon	11547696	11548511	.	+	.	transcript_id "Ledus.S5G119500.t1"; gene_id "Ledus.S5G119500"
Ledus.S5	AUGUSTUS	stop_codon	11548512	11548514	.	+	0	transcript_id "Ledus.S5G119500.t1"; gene_id "Ledus.S5G119500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8299.t1 is derived from g12970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10578985	10579287	.	+	.	Ledus.S5G107700
Ledus.S5	AUGUSTUS	transcript	10578985	10579287	.	+	.	transcript_id "Ledus.S5G107700.t1"; gene_id "Ledus.S5G107700"
Ledus.S5	AUGUSTUS	start_codon	10578985	10578987	.	+	0	transcript_id "Ledus.S5G107700.t1"; gene_id "Ledus.S5G107700"
Ledus.S5	AUGUSTUS	CDS	10578985	10579287	0.94	+	0	transcript_id "Ledus.S5G107700.t1"; gene_id "Ledus.S5G107700"
Ledus.S5	AUGUSTUS	exon	10578985	10579287	.	+	.	transcript_id "Ledus.S5G107700.t1"; gene_id "Ledus.S5G107700"
Ledus.S5	AUGUSTUS	stop_codon	10579288	10579290	.	+	0	transcript_id "Ledus.S5G107700.t1"; gene_id "Ledus.S5G107700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5281.t1 is derived from g2720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22844500	22844814	.	-	.	Ledus.S1G270200
Ledus.S1	AUGUSTUS	transcript	22844500	22844814	.	-	.	transcript_id "Ledus.S1G270200.t1"; gene_id "Ledus.S1G270200"
Ledus.S1	AUGUSTUS	stop_codon	22844497	22844499	.	-	0	transcript_id "Ledus.S1G270200.t1"; gene_id "Ledus.S1G270200"
Ledus.S1	AUGUSTUS	CDS	22844500	22844814	0.53	-	0	transcript_id "Ledus.S1G270200.t1"; gene_id "Ledus.S1G270200"
Ledus.S1	AUGUSTUS	exon	22844500	22844814	.	-	.	transcript_id "Ledus.S1G270200.t1"; gene_id "Ledus.S1G270200"
Ledus.S1	AUGUSTUS	start_codon	22844812	22844814	.	-	0	transcript_id "Ledus.S1G270200.t1"; gene_id "Ledus.S1G270200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12172.t1 is derived from g5791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10130720	10131227	.	-	.	Ledus.S4G132800
Ledus.S4	AUGUSTUS	transcript	10130720	10131227	.	-	.	transcript_id "Ledus.S4G132800.t1"; gene_id "Ledus.S4G132800"
Ledus.S4	AUGUSTUS	stop_codon	10130717	10130719	.	-	0	transcript_id "Ledus.S4G132800.t1"; gene_id "Ledus.S4G132800"
Ledus.S4	AUGUSTUS	CDS	10130720	10130782	0.5	-	0	transcript_id "Ledus.S4G132800.t1"; gene_id "Ledus.S4G132800"
Ledus.S4	AUGUSTUS	exon	10130720	10130782	.	-	.	transcript_id "Ledus.S4G132800.t1"; gene_id "Ledus.S4G132800"
Ledus.S4	AUGUSTUS	intron	10130783	10130858	.	-	.	transcript_id "Ledus.S4G132800.t1"; gene_id "Ledus.S4G132800"
Ledus.S4	AUGUSTUS	CDS	10130859	10130994	0.62	-	1	transcript_id "Ledus.S4G132800.t1"; gene_id "Ledus.S4G132800"
Ledus.S4	AUGUSTUS	exon	10130859	10130994	.	-	.	transcript_id "Ledus.S4G132800.t1"; gene_id "Ledus.S4G132800"
Ledus.S4	AUGUSTUS	intron	10130995	10131123	.	-	.	transcript_id "Ledus.S4G132800.t1"; gene_id "Ledus.S4G132800"
Ledus.S4	AUGUSTUS	CDS	10131124	10131227	0.83	-	0	transcript_id "Ledus.S4G132800.t1"; gene_id "Ledus.S4G132800"
Ledus.S4	AUGUSTUS	exon	10131124	10131227	.	-	.	transcript_id "Ledus.S4G132800.t1"; gene_id "Ledus.S4G132800"
Ledus.S4	AUGUSTUS	start_codon	10131225	10131227	.	-	0	transcript_id "Ledus.S4G132800.t1"; gene_id "Ledus.S4G132800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3453.t1 is derived from g888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8427761	8431466	.	-	.	Ledus.S1G087400
Ledus.S1	AUGUSTUS	transcript	8427761	8431466	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	stop_codon	8427758	8427760	.	-	0	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8427761	8427972	0.96	-	2	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8427761	8427972	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8427973	8428052	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8428053	8428158	0.93	-	0	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8428053	8428158	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8428159	8428662	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8428663	8428739	0.96	-	2	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8428663	8428739	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8428740	8428831	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8428832	8428880	0.93	-	0	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8428832	8428880	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8428881	8428982	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8428983	8429093	0.71	-	0	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8428983	8429093	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8429094	8429175	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8429176	8429312	1	-	2	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8429176	8429312	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8429313	8429388	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8429389	8429442	1	-	2	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8429389	8429442	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8429443	8429661	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8429662	8429770	0.92	-	0	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8429662	8429770	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8429771	8429879	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8429880	8430011	1	-	0	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8429880	8430011	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8430012	8430106	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8430107	8430245	1	-	1	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8430107	8430245	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8430246	8430336	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8430337	8430529	1	-	2	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8430337	8430529	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8430530	8430619	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8430620	8430758	0.42	-	0	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8430620	8430758	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8430759	8430964	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8430965	8431040	0.4	-	1	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8430965	8431040	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8431041	8431205	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8431206	8431220	0.64	-	1	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8431206	8431220	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	intron	8431221	8431362	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	CDS	8431363	8431466	0.5	-	0	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	exon	8431363	8431466	.	-	.	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
Ledus.S1	AUGUSTUS	start_codon	8431464	8431466	.	-	0	transcript_id "Ledus.S1G087400.t1"; gene_id "Ledus.S1G087400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg1319.t1 is derived from g8180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9242953	9245115	.	-	.	Ledus.S2G120100
Ledus.S2	AUGUSTUS	transcript	9242953	9243633	.	-	.	transcript_id "Ledus.S2G120100.t1"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	stop_codon	9242950	9242952	.	-	0	transcript_id "Ledus.S2G120100.t1"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	CDS	9242953	9243633	0.99	-	0	transcript_id "Ledus.S2G120100.t1"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	exon	9242953	9243633	.	-	.	transcript_id "Ledus.S2G120100.t1"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	start_codon	9243631	9243633	.	-	0	transcript_id "Ledus.S2G120100.t1"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	transcript	9242953	9244059	.	-	.	transcript_id "Ledus.S2G120100.t2"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	stop_codon	9242950	9242952	.	-	0	transcript_id "Ledus.S2G120100.t2"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	CDS	9242953	9244059	0.76	-	0	transcript_id "Ledus.S2G120100.t2"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	exon	9242953	9244059	.	-	.	transcript_id "Ledus.S2G120100.t2"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	start_codon	9244057	9244059	.	-	0	transcript_id "Ledus.S2G120100.t2"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	transcript	9242953	9245115	.	-	.	transcript_id "Ledus.S2G120100.t3"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	stop_codon	9242950	9242952	.	-	0	transcript_id "Ledus.S2G120100.t3"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	CDS	9242953	9245115	0.57	-	0	transcript_id "Ledus.S2G120100.t3"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	exon	9242953	9245115	.	-	.	transcript_id "Ledus.S2G120100.t3"; gene_id "Ledus.S2G120100"
Ledus.S2	AUGUSTUS	start_codon	9245113	9245115	.	-	0	transcript_id "Ledus.S2G120100.t3"; gene_id "Ledus.S2G120100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3231.t1 is derived from g666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7018183	7023089	.	+	.	Ledus.S1G065200
Ledus.S1	AUGUSTUS	transcript	7018183	7023089	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	start_codon	7018183	7018185	.	+	0	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7018183	7018257	0.91	+	0	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7018183	7018257	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7018258	7018748	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7018749	7018823	1	+	0	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7018749	7018823	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7018824	7018913	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7018914	7019001	1	+	0	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7018914	7019001	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7019002	7019179	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7019180	7019319	1	+	2	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7019180	7019319	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7019320	7019413	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7019414	7019484	1	+	0	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7019414	7019484	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7019485	7019621	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7019622	7019703	1	+	1	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7019622	7019703	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7019704	7019843	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7019844	7019945	0.84	+	0	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7019844	7019945	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7019946	7020048	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7020049	7020104	1	+	0	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7020049	7020104	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7020105	7020260	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7020261	7020295	1	+	1	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7020261	7020295	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7020296	7020446	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7020447	7020681	1	+	2	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7020447	7020681	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7020682	7020784	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7020785	7021060	1	+	1	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7020785	7021060	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7021061	7021158	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7021159	7021218	1	+	1	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7021159	7021218	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7021219	7021309	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7021310	7021349	1	+	1	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7021310	7021349	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7021350	7021424	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7021425	7021643	1	+	0	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7021425	7021643	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7021644	7021732	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7021733	7021788	0.83	+	0	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7021733	7021788	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7021789	7021871	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7021872	7021908	0.33	+	1	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7021872	7021908	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7021909	7022090	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7022091	7022197	0.43	+	0	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7022091	7022197	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	intron	7022198	7022275	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	CDS	7022276	7023089	0.69	+	1	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	exon	7022276	7023089	.	+	.	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
Ledus.S1	AUGUSTUS	stop_codon	7023090	7023092	.	+	0	transcript_id "Ledus.S1G065200.t1"; gene_id "Ledus.S1G065200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11348.t1 is derived from g4966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3715044	3716734	.	-	.	Ledus.S4G050400
Ledus.S4	AUGUSTUS	transcript	3715044	3716734	.	-	.	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	stop_codon	3715041	3715043	.	-	0	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	CDS	3715044	3715676	0.96	-	0	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	exon	3715044	3715676	.	-	.	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	intron	3715677	3715782	.	-	.	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	CDS	3715783	3716184	1	-	0	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	exon	3715783	3716184	.	-	.	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	intron	3716185	3716273	.	-	.	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	CDS	3716274	3716329	1	-	2	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	exon	3716274	3716329	.	-	.	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	intron	3716330	3716418	.	-	.	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	CDS	3716419	3716524	1	-	0	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	exon	3716419	3716524	.	-	.	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	intron	3716525	3716587	.	-	.	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	CDS	3716588	3716734	1	-	0	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	exon	3716588	3716734	.	-	.	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
Ledus.S4	AUGUSTUS	start_codon	3716732	3716734	.	-	0	transcript_id "Ledus.S4G050400.t1"; gene_id "Ledus.S4G050400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg35.t1 is derived from g9547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C12	AUGUSTUS	gene	178543	178932	.	-	.	Ledus.C12G000600
Ledus.C12	AUGUSTUS	transcript	178543	178932	.	-	.	transcript_id "Ledus.C12G000600.t1"; gene_id "Ledus.C12G000600"
Ledus.C12	AUGUSTUS	stop_codon	178540	178542	.	-	0	transcript_id "Ledus.C12G000600.t1"; gene_id "Ledus.C12G000600"
Ledus.C12	AUGUSTUS	CDS	178543	178932	0.99	-	0	transcript_id "Ledus.C12G000600.t1"; gene_id "Ledus.C12G000600"
Ledus.C12	AUGUSTUS	exon	178543	178932	.	-	.	transcript_id "Ledus.C12G000600.t1"; gene_id "Ledus.C12G000600"
Ledus.C12	AUGUSTUS	start_codon	178930	178932	.	-	0	transcript_id "Ledus.C12G000600.t1"; gene_id "Ledus.C12G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7219.t1 is derived from g6467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C13	AUGUSTUS	gene	67872	68174	.	+	.	Ledus.C13G000200
Ledus.C13	AUGUSTUS	transcript	67872	68174	.	+	.	transcript_id "Ledus.C13G000200.t1"; gene_id "Ledus.C13G000200"
Ledus.C13	AUGUSTUS	start_codon	67872	67874	.	+	0	transcript_id "Ledus.C13G000200.t1"; gene_id "Ledus.C13G000200"
Ledus.C13	AUGUSTUS	CDS	67872	68174	0.43	+	0	transcript_id "Ledus.C13G000200.t1"; gene_id "Ledus.C13G000200"
Ledus.C13	AUGUSTUS	exon	67872	68174	.	+	.	transcript_id "Ledus.C13G000200.t1"; gene_id "Ledus.C13G000200"
Ledus.C13	AUGUSTUS	stop_codon	68175	68177	.	+	0	transcript_id "Ledus.C13G000200.t1"; gene_id "Ledus.C13G000200"
# This transcript jg5880.t2 is derived from g3322.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5881.t1 is derived from g3323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27553458	27556085	.	+	.	Ledus.S1G330200
Ledus.S1	AUGUSTUS	transcript	27553458	27556085	.	+	.	transcript_id "Ledus.S1G330200.t1"; gene_id "Ledus.S1G330200"
Ledus.S1	AUGUSTUS	start_codon	27553458	27553460	.	+	0	transcript_id "Ledus.S1G330200.t1"; gene_id "Ledus.S1G330200"
Ledus.S1	AUGUSTUS	CDS	27553458	27555347	0.77	+	0	transcript_id "Ledus.S1G330200.t1"; gene_id "Ledus.S1G330200"
Ledus.S1	AUGUSTUS	exon	27553458	27555347	.	+	.	transcript_id "Ledus.S1G330200.t1"; gene_id "Ledus.S1G330200"
Ledus.S1	AUGUSTUS	intron	27555348	27555447	.	+	.	transcript_id "Ledus.S1G330200.t1"; gene_id "Ledus.S1G330200"
Ledus.S1	AUGUSTUS	CDS	27555448	27555891	0.99	+	0	transcript_id "Ledus.S1G330200.t1"; gene_id "Ledus.S1G330200"
Ledus.S1	AUGUSTUS	exon	27555448	27555891	.	+	.	transcript_id "Ledus.S1G330200.t1"; gene_id "Ledus.S1G330200"
Ledus.S1	AUGUSTUS	intron	27555892	27556007	.	+	.	transcript_id "Ledus.S1G330200.t1"; gene_id "Ledus.S1G330200"
Ledus.S1	AUGUSTUS	CDS	27556008	27556085	0.98	+	0	transcript_id "Ledus.S1G330200.t1"; gene_id "Ledus.S1G330200"
Ledus.S1	AUGUSTUS	exon	27556008	27556085	.	+	.	transcript_id "Ledus.S1G330200.t1"; gene_id "Ledus.S1G330200"
Ledus.S1	AUGUSTUS	stop_codon	27556086	27556088	.	+	0	transcript_id "Ledus.S1G330200.t1"; gene_id "Ledus.S1G330200"
# This transcript jg2804.t2 is derived from g238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2805.t1 is derived from g239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3859013	3859582	.	-	.	Ledus.S1G022600
Ledus.S1	AUGUSTUS	transcript	3859013	3859582	.	-	.	transcript_id "Ledus.S1G022600.t1"; gene_id "Ledus.S1G022600"
Ledus.S1	AUGUSTUS	stop_codon	3859010	3859012	.	-	0	transcript_id "Ledus.S1G022600.t1"; gene_id "Ledus.S1G022600"
Ledus.S1	AUGUSTUS	CDS	3859013	3859055	1	-	1	transcript_id "Ledus.S1G022600.t1"; gene_id "Ledus.S1G022600"
Ledus.S1	AUGUSTUS	exon	3859013	3859055	.	-	.	transcript_id "Ledus.S1G022600.t1"; gene_id "Ledus.S1G022600"
Ledus.S1	AUGUSTUS	intron	3859056	3859228	.	-	.	transcript_id "Ledus.S1G022600.t1"; gene_id "Ledus.S1G022600"
Ledus.S1	AUGUSTUS	CDS	3859229	3859368	1	-	0	transcript_id "Ledus.S1G022600.t1"; gene_id "Ledus.S1G022600"
Ledus.S1	AUGUSTUS	exon	3859229	3859368	.	-	.	transcript_id "Ledus.S1G022600.t1"; gene_id "Ledus.S1G022600"
Ledus.S1	AUGUSTUS	intron	3859369	3859468	.	-	.	transcript_id "Ledus.S1G022600.t1"; gene_id "Ledus.S1G022600"
Ledus.S1	AUGUSTUS	CDS	3859469	3859582	0.99	-	0	transcript_id "Ledus.S1G022600.t1"; gene_id "Ledus.S1G022600"
Ledus.S1	AUGUSTUS	exon	3859469	3859582	.	-	.	transcript_id "Ledus.S1G022600.t1"; gene_id "Ledus.S1G022600"
Ledus.S1	AUGUSTUS	start_codon	3859580	3859582	.	-	0	transcript_id "Ledus.S1G022600.t1"; gene_id "Ledus.S1G022600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7398.t1 is derived from g12069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2072650	2084717	.	-	.	Ledus.S5G017600
Ledus.S5	AUGUSTUS	transcript	2072650	2084717	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	stop_codon	2072647	2072649	.	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2072650	2074809	0.62	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2072650	2074809	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2074810	2074889	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2074890	2075078	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2074890	2075078	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2075079	2076495	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2076496	2076706	1	-	1	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2076496	2076706	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2076707	2076793	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2076794	2077131	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2076794	2077131	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2077132	2077220	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2077221	2077458	1	-	1	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2077221	2077458	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2077459	2077536	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2077537	2077874	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2077537	2077874	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2077875	2077956	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2077957	2078226	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2077957	2078226	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2078227	2078416	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2078417	2078539	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2078417	2078539	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2078540	2078621	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2078622	2078699	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2078622	2078699	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2078700	2078857	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2078858	2079034	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2078858	2079034	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2079035	2079171	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2079172	2079264	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2079172	2079264	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2079265	2079386	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2079387	2079497	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2079387	2079497	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2079498	2079631	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2079632	2079820	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2079632	2079820	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2079821	2079967	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2079968	2080159	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2079968	2080159	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2080160	2080266	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2080267	2080353	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2080267	2080353	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2080354	2080546	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2080547	2080651	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2080547	2080651	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2080652	2080772	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2080773	2080829	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2080773	2080829	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2080830	2081019	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2081020	2081094	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2081020	2081094	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2081095	2081212	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2081213	2081329	0.94	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2081213	2081329	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2081330	2081508	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2081509	2081558	0.47	-	2	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2081509	2081558	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2081559	2081696	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2081697	2081736	0.59	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2081697	2081736	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2081737	2081845	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2081846	2081896	0.58	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2081846	2081896	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2081897	2082002	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2082003	2082190	0.83	-	2	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2082003	2082190	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2082191	2082284	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2082285	2082378	0.99	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2082285	2082378	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2082379	2082484	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2082485	2082658	0.85	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2082485	2082658	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2082659	2082747	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2082748	2082843	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2082748	2082843	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2082844	2082950	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2082951	2083043	0.93	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2082951	2083043	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2083044	2083135	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2083136	2083297	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2083136	2083297	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2083298	2083390	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2083391	2083597	1	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2083391	2083597	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2083598	2083706	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2083707	2083997	0.38	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2083707	2083997	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2083998	2084253	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2084254	2084347	0.7	-	1	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2084254	2084347	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	intron	2084348	2084436	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	CDS	2084437	2084717	0.73	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	exon	2084437	2084717	.	-	.	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
Ledus.S5	AUGUSTUS	start_codon	2084715	2084717	.	-	0	transcript_id "Ledus.S5G017600.t1"; gene_id "Ledus.S5G017600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12811.t1 is derived from g6433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14958522	14961818	.	+	.	Ledus.S4G196700
Ledus.S4	AUGUSTUS	transcript	14958522	14961818	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	start_codon	14958522	14958524	.	+	0	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	CDS	14958522	14958663	1	+	0	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	exon	14958522	14958663	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	intron	14958664	14959018	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	CDS	14959019	14959119	1	+	2	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	exon	14959019	14959119	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	intron	14959120	14959208	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	CDS	14959209	14959286	1	+	0	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	exon	14959209	14959286	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	intron	14959287	14959522	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	CDS	14959523	14959616	1	+	0	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	exon	14959523	14959616	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	intron	14959617	14959703	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	CDS	14959704	14960243	0.91	+	2	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	exon	14959704	14960243	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	intron	14960244	14960333	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	CDS	14960334	14960509	1	+	2	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	exon	14960334	14960509	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	intron	14960510	14960868	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	CDS	14960869	14960943	1	+	0	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	exon	14960869	14960943	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	intron	14960944	14961125	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	CDS	14961126	14961332	1	+	0	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	exon	14961126	14961332	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	intron	14961333	14961472	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	CDS	14961473	14961586	1	+	0	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	exon	14961473	14961586	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	intron	14961587	14961671	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	CDS	14961672	14961818	0.98	+	0	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	exon	14961672	14961818	.	+	.	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
Ledus.S4	AUGUSTUS	stop_codon	14961819	14961821	.	+	0	transcript_id "Ledus.S4G196700.t1"; gene_id "Ledus.S4G196700"
# This transcript jg8857.t2 is derived from g9887.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8858.t1 is derived from g9888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2329644	2331466	.	+	.	Ledus.S3G033500
Ledus.S3	AUGUSTUS	transcript	2329644	2331466	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	start_codon	2329644	2329646	.	+	0	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	CDS	2329644	2329646	1	+	0	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	exon	2329644	2329646	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	intron	2329647	2329766	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	CDS	2329767	2329815	1	+	0	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	exon	2329767	2329815	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	intron	2329816	2329888	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	CDS	2329889	2329959	1	+	2	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	exon	2329889	2329959	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	intron	2329960	2330050	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	CDS	2330051	2330259	1	+	0	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	exon	2330051	2330259	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	intron	2330260	2330340	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	CDS	2330341	2330461	1	+	1	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	exon	2330341	2330461	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	intron	2330462	2330577	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	CDS	2330578	2330642	0.97	+	0	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	exon	2330578	2330642	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	intron	2330643	2331014	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	CDS	2331015	2331096	0.29	+	1	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	exon	2331015	2331096	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	intron	2331097	2331232	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	CDS	2331233	2331466	0.48	+	0	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	exon	2331233	2331466	.	+	.	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
Ledus.S3	AUGUSTUS	stop_codon	2331467	2331469	.	+	0	transcript_id "Ledus.S3G033500.t1"; gene_id "Ledus.S3G033500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2754.t1 is derived from g188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3158871	3159107	.	-	.	Ledus.S1G017500
Ledus.S1	AUGUSTUS	transcript	3158871	3159107	.	-	.	transcript_id "Ledus.S1G017500.t1"; gene_id "Ledus.S1G017500"
Ledus.S1	AUGUSTUS	stop_codon	3158868	3158870	.	-	0	transcript_id "Ledus.S1G017500.t1"; gene_id "Ledus.S1G017500"
Ledus.S1	AUGUSTUS	CDS	3158871	3159107	0.94	-	0	transcript_id "Ledus.S1G017500.t1"; gene_id "Ledus.S1G017500"
Ledus.S1	AUGUSTUS	exon	3158871	3159107	.	-	.	transcript_id "Ledus.S1G017500.t1"; gene_id "Ledus.S1G017500"
Ledus.S1	AUGUSTUS	start_codon	3159105	3159107	.	-	0	transcript_id "Ledus.S1G017500.t1"; gene_id "Ledus.S1G017500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg243.t1 is derived from g7104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1099748	1099945	.	+	.	Ledus.S2G012500
Ledus.S2	AUGUSTUS	transcript	1099748	1099945	.	+	.	transcript_id "Ledus.S2G012500.t1"; gene_id "Ledus.S2G012500"
Ledus.S2	AUGUSTUS	start_codon	1099748	1099750	.	+	0	transcript_id "Ledus.S2G012500.t1"; gene_id "Ledus.S2G012500"
Ledus.S2	AUGUSTUS	CDS	1099748	1099945	0.97	+	0	transcript_id "Ledus.S2G012500.t1"; gene_id "Ledus.S2G012500"
Ledus.S2	AUGUSTUS	exon	1099748	1099945	.	+	.	transcript_id "Ledus.S2G012500.t1"; gene_id "Ledus.S2G012500"
Ledus.S2	AUGUSTUS	stop_codon	1099946	1099948	.	+	0	transcript_id "Ledus.S2G012500.t1"; gene_id "Ledus.S2G012500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7738.t1 is derived from g12409.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5773275	5779014	.	+	.	Ledus.S5G051600
Ledus.S5	AUGUSTUS	transcript	5773275	5779014	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	start_codon	5773275	5773277	.	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5773275	5773335	1	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5773275	5773335	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5773336	5773469	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5773470	5773702	1	+	2	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5773470	5773702	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5773703	5773846	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5773847	5774209	1	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5773847	5774209	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5774210	5774393	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5774394	5774498	1	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5774394	5774498	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5774499	5774597	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5774598	5774702	1	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5774598	5774702	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5774703	5774793	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5774794	5774916	0.97	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5774794	5774916	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5774917	5775041	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5775042	5775130	1	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5775042	5775130	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5775131	5775275	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5775276	5775312	0.6	+	1	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5775276	5775312	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5775313	5775399	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5775400	5775457	0.44	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5775400	5775457	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5775458	5775549	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5775550	5775602	1	+	2	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5775550	5775602	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5775603	5775688	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5775689	5775766	1	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5775689	5775766	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5775767	5775850	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5775851	5775916	1	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5775851	5775916	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5775917	5776045	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5776046	5776112	1	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5776046	5776112	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5776113	5776201	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5776202	5776255	1	+	2	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5776202	5776255	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5776256	5776416	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5776417	5776524	0.63	+	2	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5776417	5776524	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5776525	5776626	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5776627	5776721	0.98	+	2	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5776627	5776721	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5776722	5776882	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5776883	5776961	1	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5776883	5776961	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5776962	5777042	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5777043	5777254	0.97	+	2	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5777043	5777254	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5777255	5777340	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5777341	5777607	1	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5777341	5777607	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5777608	5777884	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5777885	5777927	0.48	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5777885	5777927	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5777928	5778024	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5778025	5778120	0.61	+	2	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5778025	5778120	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5778121	5778212	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5778213	5778430	1	+	2	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5778213	5778430	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5778431	5778640	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5778641	5778725	1	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5778641	5778725	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5778726	5778850	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5778851	5779014	0.95	+	2	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5778851	5779014	.	+	.	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	stop_codon	5779015	5779017	.	+	0	transcript_id "Ledus.S5G051600.t1"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	transcript	5773275	5779014	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	start_codon	5773275	5773277	.	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5773275	5773335	1	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5773275	5773335	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5773336	5773469	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5773470	5773702	1	+	2	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5773470	5773702	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5773703	5773846	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5773847	5774209	1	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5773847	5774209	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5774210	5774393	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5774394	5774498	1	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5774394	5774498	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5774499	5774597	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5774598	5774702	1	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5774598	5774702	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5774703	5774793	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5774794	5774916	0.94	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5774794	5774916	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5774917	5775041	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5775042	5775130	1	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5775042	5775130	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5775131	5775275	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5775276	5775312	0.58	+	1	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5775276	5775312	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5775313	5775399	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5775400	5775457	0.4	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5775400	5775457	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5775458	5775549	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5775550	5775602	1	+	2	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5775550	5775602	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5775603	5775688	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5775689	5775766	1	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5775689	5775766	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5775767	5775850	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5775851	5775916	1	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5775851	5775916	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5775917	5776045	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5776046	5776112	1	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5776046	5776112	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5776113	5776201	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5776202	5776255	1	+	2	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5776202	5776255	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5776256	5776416	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5776417	5776524	0.59	+	2	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5776417	5776524	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5776525	5776626	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5776627	5776721	0.99	+	2	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5776627	5776721	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5776722	5776882	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5776883	5776961	1	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5776883	5776961	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5776962	5777042	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5777043	5777254	0.97	+	2	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5777043	5777254	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5777255	5777340	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5777341	5777607	1	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5777341	5777607	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5777608	5777884	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5777885	5777927	0.48	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5777885	5777927	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5777928	5778024	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5778025	5778120	0.59	+	2	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5778025	5778120	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5778121	5778212	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5778213	5778529	0.99	+	2	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5778213	5778529	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5778530	5778640	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5778641	5778725	0.49	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5778641	5778725	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	intron	5778726	5778850	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	CDS	5778851	5779014	0.45	+	2	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	exon	5778851	5779014	.	+	.	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
Ledus.S5	AUGUSTUS	stop_codon	5779015	5779017	.	+	0	transcript_id "Ledus.S5G051600.t2"; gene_id "Ledus.S5G051600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12177.t1 is derived from g5796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10155427	10157253	.	-	.	Ledus.S4G133300
Ledus.S4	AUGUSTUS	transcript	10155427	10156953	.	-	.	transcript_id "Ledus.S4G133300.t1"; gene_id "Ledus.S4G133300"
Ledus.S4	AUGUSTUS	stop_codon	10155424	10155426	.	-	0	transcript_id "Ledus.S4G133300.t1"; gene_id "Ledus.S4G133300"
Ledus.S4	AUGUSTUS	CDS	10155427	10156953	0.77	-	0	transcript_id "Ledus.S4G133300.t1"; gene_id "Ledus.S4G133300"
Ledus.S4	AUGUSTUS	exon	10155427	10156953	.	-	.	transcript_id "Ledus.S4G133300.t1"; gene_id "Ledus.S4G133300"
Ledus.S4	AUGUSTUS	start_codon	10156951	10156953	.	-	0	transcript_id "Ledus.S4G133300.t1"; gene_id "Ledus.S4G133300"
Ledus.S4	AUGUSTUS	transcript	10155427	10157253	.	-	.	transcript_id "Ledus.S4G133300.t2"; gene_id "Ledus.S4G133300"
Ledus.S4	AUGUSTUS	stop_codon	10155424	10155426	.	-	0	transcript_id "Ledus.S4G133300.t2"; gene_id "Ledus.S4G133300"
Ledus.S4	AUGUSTUS	CDS	10155427	10157253	0.41	-	0	transcript_id "Ledus.S4G133300.t2"; gene_id "Ledus.S4G133300"
Ledus.S4	AUGUSTUS	exon	10155427	10157253	.	-	.	transcript_id "Ledus.S4G133300.t2"; gene_id "Ledus.S4G133300"
Ledus.S4	AUGUSTUS	start_codon	10157251	10157253	.	-	0	transcript_id "Ledus.S4G133300.t2"; gene_id "Ledus.S4G133300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7541.t1 is derived from g12212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3749411	3751203	.	+	.	Ledus.S5G031900
Ledus.S5	AUGUSTUS	transcript	3749411	3751203	.	+	.	transcript_id "Ledus.S5G031900.t1"; gene_id "Ledus.S5G031900"
Ledus.S5	AUGUSTUS	start_codon	3749411	3749413	.	+	0	transcript_id "Ledus.S5G031900.t1"; gene_id "Ledus.S5G031900"
Ledus.S5	AUGUSTUS	CDS	3749411	3749447	0.62	+	0	transcript_id "Ledus.S5G031900.t1"; gene_id "Ledus.S5G031900"
Ledus.S5	AUGUSTUS	exon	3749411	3749447	.	+	.	transcript_id "Ledus.S5G031900.t1"; gene_id "Ledus.S5G031900"
Ledus.S5	AUGUSTUS	intron	3749448	3749536	.	+	.	transcript_id "Ledus.S5G031900.t1"; gene_id "Ledus.S5G031900"
Ledus.S5	AUGUSTUS	CDS	3749537	3751203	0.93	+	2	transcript_id "Ledus.S5G031900.t1"; gene_id "Ledus.S5G031900"
Ledus.S5	AUGUSTUS	exon	3749537	3751203	.	+	.	transcript_id "Ledus.S5G031900.t1"; gene_id "Ledus.S5G031900"
Ledus.S5	AUGUSTUS	stop_codon	3751204	3751206	.	+	0	transcript_id "Ledus.S5G031900.t1"; gene_id "Ledus.S5G031900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6919.t1 is derived from g4363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35345643	35347199	.	-	.	Ledus.S1G434000
Ledus.S1	AUGUSTUS	transcript	35345643	35347199	.	-	.	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	stop_codon	35345640	35345642	.	-	0	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	CDS	35345643	35345670	0.92	-	1	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	exon	35345643	35345670	.	-	.	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	intron	35345671	35345873	.	-	.	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	CDS	35345874	35346274	0.89	-	0	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	exon	35345874	35346274	.	-	.	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	intron	35346275	35346350	.	-	.	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	CDS	35346351	35346431	1	-	0	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	exon	35346351	35346431	.	-	.	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	intron	35346432	35346601	.	-	.	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	CDS	35346602	35346808	1	-	0	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	exon	35346602	35346808	.	-	.	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	intron	35346809	35346914	.	-	.	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	CDS	35346915	35347199	0.69	-	0	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	exon	35346915	35347199	.	-	.	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
Ledus.S1	AUGUSTUS	start_codon	35347197	35347199	.	-	0	transcript_id "Ledus.S1G434000.t1"; gene_id "Ledus.S1G434000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12422.t1 is derived from g6043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11958173	11959797	.	-	.	Ledus.S4G157800
Ledus.S4	AUGUSTUS	transcript	11958173	11959797	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	stop_codon	11958170	11958172	.	-	0	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	CDS	11958173	11958181	0.98	-	0	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	exon	11958173	11958181	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	intron	11958182	11958258	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	CDS	11958259	11958277	0.94	-	1	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	exon	11958259	11958277	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	intron	11958278	11958333	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	CDS	11958334	11958347	0.98	-	0	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	exon	11958334	11958347	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	intron	11958348	11958440	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	CDS	11958441	11958528	1	-	1	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	exon	11958441	11958528	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	intron	11958529	11958596	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	CDS	11958597	11958703	1	-	0	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	exon	11958597	11958703	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	intron	11958704	11958789	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	CDS	11958790	11958926	1	-	2	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	exon	11958790	11958926	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	intron	11958927	11959006	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	CDS	11959007	11959102	1	-	2	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	exon	11959007	11959102	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	intron	11959103	11959187	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	CDS	11959188	11959366	0.99	-	1	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	exon	11959188	11959366	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	intron	11959367	11959480	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	CDS	11959481	11959560	0.99	-	0	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	exon	11959481	11959560	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	intron	11959561	11959646	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	CDS	11959647	11959669	1	-	2	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	exon	11959647	11959669	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	intron	11959670	11959760	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	CDS	11959761	11959797	0.94	-	0	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	exon	11959761	11959797	.	-	.	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
Ledus.S4	AUGUSTUS	start_codon	11959795	11959797	.	-	0	transcript_id "Ledus.S4G157800.t1"; gene_id "Ledus.S4G157800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12661.t1 is derived from g6283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13692147	13693139	.	+	.	Ledus.S4G181700
Ledus.S4	AUGUSTUS	transcript	13692147	13693139	.	+	.	transcript_id "Ledus.S4G181700.t1"; gene_id "Ledus.S4G181700"
Ledus.S4	AUGUSTUS	start_codon	13692147	13692149	.	+	0	transcript_id "Ledus.S4G181700.t1"; gene_id "Ledus.S4G181700"
Ledus.S4	AUGUSTUS	CDS	13692147	13692191	0.41	+	0	transcript_id "Ledus.S4G181700.t1"; gene_id "Ledus.S4G181700"
Ledus.S4	AUGUSTUS	exon	13692147	13692191	.	+	.	transcript_id "Ledus.S4G181700.t1"; gene_id "Ledus.S4G181700"
Ledus.S4	AUGUSTUS	intron	13692192	13692425	.	+	.	transcript_id "Ledus.S4G181700.t1"; gene_id "Ledus.S4G181700"
Ledus.S4	AUGUSTUS	CDS	13692426	13693139	0.61	+	0	transcript_id "Ledus.S4G181700.t1"; gene_id "Ledus.S4G181700"
Ledus.S4	AUGUSTUS	exon	13692426	13693139	.	+	.	transcript_id "Ledus.S4G181700.t1"; gene_id "Ledus.S4G181700"
Ledus.S4	AUGUSTUS	stop_codon	13693140	13693142	.	+	0	transcript_id "Ledus.S4G181700.t1"; gene_id "Ledus.S4G181700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10632.t1 is derived from g11662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16625128	16625553	.	-	.	Ledus.S3G210900
Ledus.S3	AUGUSTUS	transcript	16625128	16625553	.	-	.	transcript_id "Ledus.S3G210900.t1"; gene_id "Ledus.S3G210900"
Ledus.S3	AUGUSTUS	stop_codon	16625125	16625127	.	-	0	transcript_id "Ledus.S3G210900.t1"; gene_id "Ledus.S3G210900"
Ledus.S3	AUGUSTUS	CDS	16625128	16625553	0.96	-	0	transcript_id "Ledus.S3G210900.t1"; gene_id "Ledus.S3G210900"
Ledus.S3	AUGUSTUS	exon	16625128	16625553	.	-	.	transcript_id "Ledus.S3G210900.t1"; gene_id "Ledus.S3G210900"
Ledus.S3	AUGUSTUS	start_codon	16625551	16625553	.	-	0	transcript_id "Ledus.S3G210900.t1"; gene_id "Ledus.S3G210900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1290.t1 is derived from g8151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9093658	9095643	.	+	.	Ledus.S2G117200
Ledus.S2	AUGUSTUS	transcript	9093658	9095643	.	+	.	transcript_id "Ledus.S2G117200.t1"; gene_id "Ledus.S2G117200"
Ledus.S2	AUGUSTUS	start_codon	9093658	9093660	.	+	0	transcript_id "Ledus.S2G117200.t1"; gene_id "Ledus.S2G117200"
Ledus.S2	AUGUSTUS	CDS	9093658	9093672	0.11	+	0	transcript_id "Ledus.S2G117200.t1"; gene_id "Ledus.S2G117200"
Ledus.S2	AUGUSTUS	exon	9093658	9093672	.	+	.	transcript_id "Ledus.S2G117200.t1"; gene_id "Ledus.S2G117200"
Ledus.S2	AUGUSTUS	intron	9093673	9095385	.	+	.	transcript_id "Ledus.S2G117200.t1"; gene_id "Ledus.S2G117200"
Ledus.S2	AUGUSTUS	CDS	9095386	9095643	0.01	+	0	transcript_id "Ledus.S2G117200.t1"; gene_id "Ledus.S2G117200"
Ledus.S2	AUGUSTUS	exon	9095386	9095643	.	+	.	transcript_id "Ledus.S2G117200.t1"; gene_id "Ledus.S2G117200"
Ledus.S2	AUGUSTUS	stop_codon	9095644	9095646	.	+	0	transcript_id "Ledus.S2G117200.t1"; gene_id "Ledus.S2G117200"
# This transcript jg2847.t2 is derived from g281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2848.t1 is derived from g282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4149245	4150705	.	+	.	Ledus.S1G026900
Ledus.S1	AUGUSTUS	transcript	4149425	4150705	.	+	.	transcript_id "Ledus.S1G026900.t1"; gene_id "Ledus.S1G026900"
Ledus.S1	AUGUSTUS	start_codon	4149425	4149427	.	+	0	transcript_id "Ledus.S1G026900.t1"; gene_id "Ledus.S1G026900"
Ledus.S1	AUGUSTUS	CDS	4149425	4150705	0.92	+	0	transcript_id "Ledus.S1G026900.t1"; gene_id "Ledus.S1G026900"
Ledus.S1	AUGUSTUS	exon	4149425	4150705	.	+	.	transcript_id "Ledus.S1G026900.t1"; gene_id "Ledus.S1G026900"
Ledus.S1	AUGUSTUS	stop_codon	4150706	4150708	.	+	0	transcript_id "Ledus.S1G026900.t1"; gene_id "Ledus.S1G026900"
Ledus.S1	AUGUSTUS	transcript	4149245	4150705	.	+	.	transcript_id "Ledus.S1G026900.t2"; gene_id "Ledus.S1G026900"
Ledus.S1	AUGUSTUS	start_codon	4149245	4149247	.	+	0	transcript_id "Ledus.S1G026900.t2"; gene_id "Ledus.S1G026900"
Ledus.S1	AUGUSTUS	CDS	4149245	4150705	0.74	+	0	transcript_id "Ledus.S1G026900.t2"; gene_id "Ledus.S1G026900"
Ledus.S1	AUGUSTUS	exon	4149245	4150705	.	+	.	transcript_id "Ledus.S1G026900.t2"; gene_id "Ledus.S1G026900"
Ledus.S1	AUGUSTUS	stop_codon	4150706	4150708	.	+	0	transcript_id "Ledus.S1G026900.t2"; gene_id "Ledus.S1G026900"
# This transcript jg900.t2 is derived from g7761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg901.t1 is derived from g7762.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6031588	6035027	.	+	.	Ledus.S2G078300
Ledus.S2	AUGUSTUS	transcript	6031588	6035027	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	start_codon	6031588	6031590	.	+	0	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6031588	6031684	0.54	+	0	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6031588	6031684	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6031685	6031760	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6031761	6031976	0.93	+	2	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6031761	6031976	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6031977	6032499	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6032500	6032705	1	+	2	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6032500	6032705	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6032706	6032784	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6032785	6032988	0.99	+	0	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6032785	6032988	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6032989	6033102	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6033103	6033213	1	+	0	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6033103	6033213	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6033214	6033353	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6033354	6033449	1	+	0	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6033354	6033449	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6033450	6033551	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6033552	6033597	1	+	0	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6033552	6033597	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6033598	6033722	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6033723	6033802	1	+	2	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6033723	6033802	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6033803	6033905	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6033906	6033974	1	+	0	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6033906	6033974	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6033975	6034083	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6034084	6034168	1	+	0	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6034084	6034168	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6034169	6034306	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6034307	6034461	1	+	2	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6034307	6034461	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6034462	6034567	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6034568	6034648	1	+	0	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6034568	6034648	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6034649	6034748	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6034749	6034805	1	+	0	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6034749	6034805	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	intron	6034806	6034901	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	CDS	6034902	6035027	0.94	+	0	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	exon	6034902	6035027	.	+	.	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
Ledus.S2	AUGUSTUS	stop_codon	6035028	6035030	.	+	0	transcript_id "Ledus.S2G078300.t1"; gene_id "Ledus.S2G078300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2646.t1 is derived from g79.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1129878	1130087	.	-	.	Ledus.S1G006700
Ledus.S1	AUGUSTUS	transcript	1129878	1130087	.	-	.	transcript_id "Ledus.S1G006700.t1"; gene_id "Ledus.S1G006700"
Ledus.S1	AUGUSTUS	stop_codon	1129875	1129877	.	-	0	transcript_id "Ledus.S1G006700.t1"; gene_id "Ledus.S1G006700"
Ledus.S1	AUGUSTUS	CDS	1129878	1130087	0.65	-	0	transcript_id "Ledus.S1G006700.t1"; gene_id "Ledus.S1G006700"
Ledus.S1	AUGUSTUS	exon	1129878	1130087	.	-	.	transcript_id "Ledus.S1G006700.t1"; gene_id "Ledus.S1G006700"
Ledus.S1	AUGUSTUS	start_codon	1130085	1130087	.	-	0	transcript_id "Ledus.S1G006700.t1"; gene_id "Ledus.S1G006700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10754.t1 is derived from g11785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17499735	17502751	.	+	.	Ledus.S3G223100
Ledus.S3	AUGUSTUS	transcript	17499735	17502751	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	start_codon	17499735	17499737	.	+	0	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17499735	17499772	0.63	+	0	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17499735	17499772	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17499773	17499865	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17499866	17499965	0.67	+	1	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17499866	17499965	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17499966	17500103	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17500104	17500199	1	+	0	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17500104	17500199	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17500200	17500286	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17500287	17500373	1	+	0	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17500287	17500373	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17500374	17500730	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17500731	17500787	1	+	0	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17500731	17500787	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17500788	17500873	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17500874	17500954	1	+	0	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17500874	17500954	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17500955	17501026	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17501027	17501171	0.55	+	0	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17501027	17501171	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17501172	17501274	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17501275	17501518	0.97	+	2	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17501275	17501518	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17501519	17501605	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17501606	17501771	0.99	+	1	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17501606	17501771	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17501772	17501859	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17501860	17501943	1	+	0	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17501860	17501943	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17501944	17502028	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17502029	17502156	1	+	0	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17502029	17502156	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17502157	17502284	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17502285	17502483	1	+	1	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17502285	17502483	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17502484	17502571	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17502572	17502751	1	+	0	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17502572	17502751	.	+	.	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	stop_codon	17502752	17502754	.	+	0	transcript_id "Ledus.S3G223100.t1"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	transcript	17499735	17502751	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	start_codon	17499735	17499737	.	+	0	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17499735	17499772	0.55	+	0	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17499735	17499772	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17499773	17499865	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17499866	17499965	0.61	+	1	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17499866	17499965	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17499966	17500103	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17500104	17500199	1	+	0	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17500104	17500199	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17500200	17500286	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17500287	17500373	1	+	0	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17500287	17500373	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17500374	17500730	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17500731	17500787	1	+	0	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17500731	17500787	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17500788	17500873	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17500874	17500954	1	+	0	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17500874	17500954	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17500955	17501026	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17501027	17501171	0.49	+	0	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17501027	17501171	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17501172	17501274	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17501275	17501518	0.98	+	2	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17501275	17501518	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17501519	17501605	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17501606	17501627	0.36	+	1	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17501606	17501627	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17501628	17501694	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17501695	17501766	0.52	+	0	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17501695	17501766	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17501767	17501859	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17501860	17501943	0.84	+	0	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17501860	17501943	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17501944	17502028	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17502029	17502156	1	+	0	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17502029	17502156	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17502157	17502284	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17502285	17502483	1	+	1	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17502285	17502483	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	intron	17502484	17502571	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	CDS	17502572	17502751	1	+	0	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	exon	17502572	17502751	.	+	.	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
Ledus.S3	AUGUSTUS	stop_codon	17502752	17502754	.	+	0	transcript_id "Ledus.S3G223100.t2"; gene_id "Ledus.S3G223100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6443.t1 is derived from g3886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31273427	31274140	.	-	.	Ledus.S1G386400
Ledus.S1	AUGUSTUS	transcript	31273427	31274140	.	-	.	transcript_id "Ledus.S1G386400.t1"; gene_id "Ledus.S1G386400"
Ledus.S1	AUGUSTUS	stop_codon	31273424	31273426	.	-	0	transcript_id "Ledus.S1G386400.t1"; gene_id "Ledus.S1G386400"
Ledus.S1	AUGUSTUS	CDS	31273427	31274140	0.37	-	0	transcript_id "Ledus.S1G386400.t1"; gene_id "Ledus.S1G386400"
Ledus.S1	AUGUSTUS	exon	31273427	31274140	.	-	.	transcript_id "Ledus.S1G386400.t1"; gene_id "Ledus.S1G386400"
Ledus.S1	AUGUSTUS	start_codon	31274138	31274140	.	-	0	transcript_id "Ledus.S1G386400.t1"; gene_id "Ledus.S1G386400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9675.t1 is derived from g10705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8975997	8977702	.	-	.	Ledus.S3G115200
Ledus.S3	AUGUSTUS	transcript	8975997	8977702	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	stop_codon	8975994	8975996	.	-	0	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	CDS	8975997	8976118	0.58	-	2	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	exon	8975997	8976118	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	intron	8976119	8976209	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	CDS	8976210	8976267	0.9	-	0	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	exon	8976210	8976267	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	intron	8976268	8976358	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	CDS	8976359	8976456	1	-	2	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	exon	8976359	8976456	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	intron	8976457	8976531	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	CDS	8976532	8976586	1	-	0	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	exon	8976532	8976586	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	intron	8976587	8976677	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	CDS	8976678	8976779	1	-	0	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	exon	8976678	8976779	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	intron	8976780	8976873	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	CDS	8976874	8976981	1	-	0	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	exon	8976874	8976981	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	intron	8976982	8977063	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	CDS	8977064	8977122	1	-	2	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	exon	8977064	8977122	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	intron	8977123	8977193	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	CDS	8977194	8977332	1	-	0	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	exon	8977194	8977332	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	intron	8977333	8977420	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	CDS	8977421	8977702	0.59	-	0	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	exon	8977421	8977702	.	-	.	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
Ledus.S3	AUGUSTUS	start_codon	8977700	8977702	.	-	0	transcript_id "Ledus.S3G115200.t1"; gene_id "Ledus.S3G115200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10647.t1 is derived from g11677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16858437	16858811	.	-	.	Ledus.S3G212400
Ledus.S3	AUGUSTUS	transcript	16858437	16858811	.	-	.	transcript_id "Ledus.S3G212400.t1"; gene_id "Ledus.S3G212400"
Ledus.S3	AUGUSTUS	stop_codon	16858434	16858436	.	-	0	transcript_id "Ledus.S3G212400.t1"; gene_id "Ledus.S3G212400"
Ledus.S3	AUGUSTUS	CDS	16858437	16858656	0.99	-	1	transcript_id "Ledus.S3G212400.t1"; gene_id "Ledus.S3G212400"
Ledus.S3	AUGUSTUS	exon	16858437	16858656	.	-	.	transcript_id "Ledus.S3G212400.t1"; gene_id "Ledus.S3G212400"
Ledus.S3	AUGUSTUS	intron	16858657	16858758	.	-	.	transcript_id "Ledus.S3G212400.t1"; gene_id "Ledus.S3G212400"
Ledus.S3	AUGUSTUS	CDS	16858759	16858811	0.99	-	0	transcript_id "Ledus.S3G212400.t1"; gene_id "Ledus.S3G212400"
Ledus.S3	AUGUSTUS	exon	16858759	16858811	.	-	.	transcript_id "Ledus.S3G212400.t1"; gene_id "Ledus.S3G212400"
Ledus.S3	AUGUSTUS	start_codon	16858809	16858811	.	-	0	transcript_id "Ledus.S3G212400.t1"; gene_id "Ledus.S3G212400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11948.t1 is derived from g5567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7967175	7968157	.	+	.	Ledus.S4G110400
Ledus.S4	AUGUSTUS	transcript	7967175	7968157	.	+	.	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	start_codon	7967175	7967177	.	+	0	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	CDS	7967175	7967347	0.6	+	0	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	exon	7967175	7967347	.	+	.	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	intron	7967348	7967467	.	+	.	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	CDS	7967468	7967503	0.63	+	1	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	exon	7967468	7967503	.	+	.	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	intron	7967504	7967585	.	+	.	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	CDS	7967586	7967787	1	+	1	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	exon	7967586	7967787	.	+	.	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	intron	7967788	7967864	.	+	.	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	CDS	7967865	7967940	1	+	0	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	exon	7967865	7967940	.	+	.	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	intron	7967941	7968020	.	+	.	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	CDS	7968021	7968157	1	+	2	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	exon	7968021	7968157	.	+	.	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
Ledus.S4	AUGUSTUS	stop_codon	7968158	7968160	.	+	0	transcript_id "Ledus.S4G110400.t1"; gene_id "Ledus.S4G110400"
# This transcript jg8557.t2 is derived from g9587.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8558.t1 is derived from g9588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	164641	174404	.	-	.	Ledus.S3G003500
Ledus.S3	AUGUSTUS	transcript	164641	174404	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	stop_codon	164638	164640	.	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	164641	164772	0.79	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	164641	164772	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	164773	164910	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	164911	165126	1	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	164911	165126	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	165127	165226	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	165227	167557	0.9	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	165227	167557	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	167558	167669	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	167670	167867	0.84	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	167670	167867	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	167868	168130	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	168131	168388	0.76	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	168131	168388	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	168389	168497	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	168498	168603	0.96	-	1	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	168498	168603	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	168604	168731	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	168732	168910	1	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	168732	168910	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	168911	169057	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	169058	169182	1	-	2	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	169058	169182	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	169183	169267	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	169268	169910	0.98	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	169268	169910	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	169911	170011	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	170012	170146	0.43	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	170012	170146	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	170147	170234	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	170235	170258	0.85	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	170235	170258	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	170259	170520	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	170521	170619	0.96	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	170521	170619	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	170620	170836	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	170837	170930	0.97	-	1	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	170837	170930	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	170931	171039	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	171040	171104	0.93	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	171040	171104	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	171105	171263	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	171264	171345	1	-	1	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	171264	171345	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	171346	171519	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	171520	171620	1	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	171520	171620	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	171621	171717	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	171718	171778	0.86	-	1	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	171718	171778	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	171779	171949	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	171950	172116	0.97	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	171950	172116	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	172117	172345	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	172346	172467	0.6	-	2	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	172346	172467	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	172468	172560	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	172561	172623	0.98	-	2	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	172561	172623	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	172624	172816	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	172817	172954	1	-	2	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	172817	172954	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	172955	173035	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	173036	173189	1	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	173036	173189	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	173190	173411	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	173412	173856	0.83	-	1	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	173412	173856	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	173857	174267	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	174268	174404	0.98	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	174268	174404	.	-	.	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	start_codon	174402	174404	.	-	0	transcript_id "Ledus.S3G003500.t1"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	transcript	164641	174404	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	stop_codon	164638	164640	.	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	164641	164772	0.81	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	164641	164772	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	164773	164910	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	164911	165126	1	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	164911	165126	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	165127	165226	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	165227	167557	0.95	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	165227	167557	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	167558	167669	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	167670	167867	0.87	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	167670	167867	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	167868	168130	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	168131	168388	0.69	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	168131	168388	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	168389	168497	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	168498	168603	0.99	-	1	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	168498	168603	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	168604	168731	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	168732	168910	1	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	168732	168910	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	168911	169057	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	169058	169182	1	-	2	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	169058	169182	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	169183	169267	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	169268	169910	0.97	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	169268	169910	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	169911	170011	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	170012	170146	0.49	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	170012	170146	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	170147	170234	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	170235	170258	0.9	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	170235	170258	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	170259	170520	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	170521	170619	0.94	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	170521	170619	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	170620	170836	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	170837	170930	1	-	1	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	170837	170930	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	170931	171039	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	171040	171104	0.95	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	171040	171104	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	171105	171263	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	171264	171345	1	-	1	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	171264	171345	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	171346	171519	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	171520	171620	1	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	171520	171620	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	171621	171717	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	171718	171778	0.86	-	1	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	171718	171778	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	171779	171949	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	171950	172116	0.96	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	171950	172116	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	172117	172345	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	172346	172467	0.55	-	2	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	172346	172467	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	172468	172560	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	172561	172623	0.99	-	2	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	172561	172623	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	172624	172816	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	172817	172954	1	-	2	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	172817	172954	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	172955	173035	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	173036	173189	0.97	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	173036	173189	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	173190	173362	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	173363	173371	0.84	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	173363	173371	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	173372	173453	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	173454	173856	0.46	-	1	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	173454	173856	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	intron	173857	174267	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	CDS	174268	174404	0.99	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	exon	174268	174404	.	-	.	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
Ledus.S3	AUGUSTUS	start_codon	174402	174404	.	-	0	transcript_id "Ledus.S3G003500.t2"; gene_id "Ledus.S3G003500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9141.t1 is derived from g10171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4821547	4821879	.	-	.	Ledus.S3G061800
Ledus.S3	AUGUSTUS	transcript	4821547	4821879	.	-	.	transcript_id "Ledus.S3G061800.t1"; gene_id "Ledus.S3G061800"
Ledus.S3	AUGUSTUS	stop_codon	4821544	4821546	.	-	0	transcript_id "Ledus.S3G061800.t1"; gene_id "Ledus.S3G061800"
Ledus.S3	AUGUSTUS	CDS	4821547	4821879	0.78	-	0	transcript_id "Ledus.S3G061800.t1"; gene_id "Ledus.S3G061800"
Ledus.S3	AUGUSTUS	exon	4821547	4821879	.	-	.	transcript_id "Ledus.S3G061800.t1"; gene_id "Ledus.S3G061800"
Ledus.S3	AUGUSTUS	start_codon	4821877	4821879	.	-	0	transcript_id "Ledus.S3G061800.t1"; gene_id "Ledus.S3G061800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1977.t1 is derived from g8840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13997798	13999075	.	+	.	Ledus.S2G185900
Ledus.S2	AUGUSTUS	transcript	13997798	13999075	.	+	.	transcript_id "Ledus.S2G185900.t1"; gene_id "Ledus.S2G185900"
Ledus.S2	AUGUSTUS	start_codon	13997798	13997800	.	+	0	transcript_id "Ledus.S2G185900.t1"; gene_id "Ledus.S2G185900"
Ledus.S2	AUGUSTUS	CDS	13997798	13999075	0.93	+	0	transcript_id "Ledus.S2G185900.t1"; gene_id "Ledus.S2G185900"
Ledus.S2	AUGUSTUS	exon	13997798	13999075	.	+	.	transcript_id "Ledus.S2G185900.t1"; gene_id "Ledus.S2G185900"
Ledus.S2	AUGUSTUS	stop_codon	13999076	13999078	.	+	0	transcript_id "Ledus.S2G185900.t1"; gene_id "Ledus.S2G185900"
# This transcript jg8672.t2 is derived from g9702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8673.t1 is derived from g9703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1301694	1303277	.	+	.	Ledus.S3G015000
Ledus.S3	AUGUSTUS	transcript	1301694	1303277	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	start_codon	1301694	1301696	.	+	0	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	CDS	1301694	1301716	0.39	+	0	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	exon	1301694	1301716	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	intron	1301717	1301871	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	CDS	1301872	1301920	1	+	1	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	exon	1301872	1301920	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	intron	1301921	1302128	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	CDS	1302129	1302237	1	+	0	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	exon	1302129	1302237	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	intron	1302238	1302378	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	CDS	1302379	1302472	1	+	2	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	exon	1302379	1302472	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	intron	1302473	1302652	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	CDS	1302653	1302786	1	+	1	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	exon	1302653	1302786	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	intron	1302787	1302852	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	CDS	1302853	1303016	1	+	2	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	exon	1302853	1303016	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	intron	1303017	1303205	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	CDS	1303206	1303277	1	+	0	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	exon	1303206	1303277	.	+	.	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
Ledus.S3	AUGUSTUS	stop_codon	1303278	1303280	.	+	0	transcript_id "Ledus.S3G015000.t1"; gene_id "Ledus.S3G015000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4936.t1 is derived from g2374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20757225	20760828	.	-	.	Ledus.S1G235700
Ledus.S1	AUGUSTUS	transcript	20757225	20760828	.	-	.	transcript_id "Ledus.S1G235700.t1"; gene_id "Ledus.S1G235700"
Ledus.S1	AUGUSTUS	stop_codon	20757222	20757224	.	-	0	transcript_id "Ledus.S1G235700.t1"; gene_id "Ledus.S1G235700"
Ledus.S1	AUGUSTUS	CDS	20757225	20757808	0.99	-	2	transcript_id "Ledus.S1G235700.t1"; gene_id "Ledus.S1G235700"
Ledus.S1	AUGUSTUS	exon	20757225	20757808	.	-	.	transcript_id "Ledus.S1G235700.t1"; gene_id "Ledus.S1G235700"
Ledus.S1	AUGUSTUS	intron	20757809	20758133	.	-	.	transcript_id "Ledus.S1G235700.t1"; gene_id "Ledus.S1G235700"
Ledus.S1	AUGUSTUS	CDS	20758134	20760828	0.81	-	0	transcript_id "Ledus.S1G235700.t1"; gene_id "Ledus.S1G235700"
Ledus.S1	AUGUSTUS	exon	20758134	20760828	.	-	.	transcript_id "Ledus.S1G235700.t1"; gene_id "Ledus.S1G235700"
Ledus.S1	AUGUSTUS	start_codon	20760826	20760828	.	-	0	transcript_id "Ledus.S1G235700.t1"; gene_id "Ledus.S1G235700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg608.t1 is derived from g7469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3601997	3603138	.	-	.	Ledus.S2G049000
Ledus.S2	AUGUSTUS	transcript	3601997	3603138	.	-	.	transcript_id "Ledus.S2G049000.t1"; gene_id "Ledus.S2G049000"
Ledus.S2	AUGUSTUS	stop_codon	3601994	3601996	.	-	0	transcript_id "Ledus.S2G049000.t1"; gene_id "Ledus.S2G049000"
Ledus.S2	AUGUSTUS	CDS	3601997	3602997	1	-	2	transcript_id "Ledus.S2G049000.t1"; gene_id "Ledus.S2G049000"
Ledus.S2	AUGUSTUS	exon	3601997	3602997	.	-	.	transcript_id "Ledus.S2G049000.t1"; gene_id "Ledus.S2G049000"
Ledus.S2	AUGUSTUS	intron	3602998	3603065	.	-	.	transcript_id "Ledus.S2G049000.t1"; gene_id "Ledus.S2G049000"
Ledus.S2	AUGUSTUS	CDS	3603066	3603138	0.93	-	0	transcript_id "Ledus.S2G049000.t1"; gene_id "Ledus.S2G049000"
Ledus.S2	AUGUSTUS	exon	3603066	3603138	.	-	.	transcript_id "Ledus.S2G049000.t1"; gene_id "Ledus.S2G049000"
Ledus.S2	AUGUSTUS	start_codon	3603136	3603138	.	-	0	transcript_id "Ledus.S2G049000.t1"; gene_id "Ledus.S2G049000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12636.t1 is derived from g6258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13554495	13555526	.	-	.	Ledus.S4G179200
Ledus.S4	AUGUSTUS	transcript	13554495	13555526	.	-	.	transcript_id "Ledus.S4G179200.t1"; gene_id "Ledus.S4G179200"
Ledus.S4	AUGUSTUS	stop_codon	13554492	13554494	.	-	0	transcript_id "Ledus.S4G179200.t1"; gene_id "Ledus.S4G179200"
Ledus.S4	AUGUSTUS	CDS	13554495	13555526	1	-	0	transcript_id "Ledus.S4G179200.t1"; gene_id "Ledus.S4G179200"
Ledus.S4	AUGUSTUS	exon	13554495	13555526	.	-	.	transcript_id "Ledus.S4G179200.t1"; gene_id "Ledus.S4G179200"
Ledus.S4	AUGUSTUS	start_codon	13555524	13555526	.	-	0	transcript_id "Ledus.S4G179200.t1"; gene_id "Ledus.S4G179200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12165.t1 is derived from g5784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10069097	10069594	.	-	.	Ledus.S4G132100
Ledus.S4	AUGUSTUS	transcript	10069097	10069594	.	-	.	transcript_id "Ledus.S4G132100.t1"; gene_id "Ledus.S4G132100"
Ledus.S4	AUGUSTUS	stop_codon	10069094	10069096	.	-	0	transcript_id "Ledus.S4G132100.t1"; gene_id "Ledus.S4G132100"
Ledus.S4	AUGUSTUS	CDS	10069097	10069594	0.82	-	0	transcript_id "Ledus.S4G132100.t1"; gene_id "Ledus.S4G132100"
Ledus.S4	AUGUSTUS	exon	10069097	10069594	.	-	.	transcript_id "Ledus.S4G132100.t1"; gene_id "Ledus.S4G132100"
Ledus.S4	AUGUSTUS	start_codon	10069592	10069594	.	-	0	transcript_id "Ledus.S4G132100.t1"; gene_id "Ledus.S4G132100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7151.t1 is derived from g6682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1781620	1782622	.	-	.	Ledus.C7G021200
Ledus.C7	AUGUSTUS	transcript	1781620	1782622	.	-	.	transcript_id "Ledus.C7G021200.t1"; gene_id "Ledus.C7G021200"
Ledus.C7	AUGUSTUS	stop_codon	1781617	1781619	.	-	0	transcript_id "Ledus.C7G021200.t1"; gene_id "Ledus.C7G021200"
Ledus.C7	AUGUSTUS	CDS	1781620	1782328	0.42	-	1	transcript_id "Ledus.C7G021200.t1"; gene_id "Ledus.C7G021200"
Ledus.C7	AUGUSTUS	exon	1781620	1782328	.	-	.	transcript_id "Ledus.C7G021200.t1"; gene_id "Ledus.C7G021200"
Ledus.C7	AUGUSTUS	intron	1782329	1782443	.	-	.	transcript_id "Ledus.C7G021200.t1"; gene_id "Ledus.C7G021200"
Ledus.C7	AUGUSTUS	CDS	1782444	1782622	0.85	-	0	transcript_id "Ledus.C7G021200.t1"; gene_id "Ledus.C7G021200"
Ledus.C7	AUGUSTUS	exon	1782444	1782622	.	-	.	transcript_id "Ledus.C7G021200.t1"; gene_id "Ledus.C7G021200"
Ledus.C7	AUGUSTUS	start_codon	1782620	1782622	.	-	0	transcript_id "Ledus.C7G021200.t1"; gene_id "Ledus.C7G021200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg520.t1 is derived from g7381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3023277	3023770	.	+	.	Ledus.S2G040200
Ledus.S2	AUGUSTUS	transcript	3023277	3023770	.	+	.	transcript_id "Ledus.S2G040200.t1"; gene_id "Ledus.S2G040200"
Ledus.S2	AUGUSTUS	start_codon	3023277	3023279	.	+	0	transcript_id "Ledus.S2G040200.t1"; gene_id "Ledus.S2G040200"
Ledus.S2	AUGUSTUS	CDS	3023277	3023460	0.6	+	0	transcript_id "Ledus.S2G040200.t1"; gene_id "Ledus.S2G040200"
Ledus.S2	AUGUSTUS	exon	3023277	3023460	.	+	.	transcript_id "Ledus.S2G040200.t1"; gene_id "Ledus.S2G040200"
Ledus.S2	AUGUSTUS	intron	3023461	3023699	.	+	.	transcript_id "Ledus.S2G040200.t1"; gene_id "Ledus.S2G040200"
Ledus.S2	AUGUSTUS	CDS	3023700	3023770	0.87	+	2	transcript_id "Ledus.S2G040200.t1"; gene_id "Ledus.S2G040200"
Ledus.S2	AUGUSTUS	exon	3023700	3023770	.	+	.	transcript_id "Ledus.S2G040200.t1"; gene_id "Ledus.S2G040200"
Ledus.S2	AUGUSTUS	stop_codon	3023771	3023773	.	+	0	transcript_id "Ledus.S2G040200.t1"; gene_id "Ledus.S2G040200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6364.t1 is derived from g3807.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30780236	30782196	.	+	.	Ledus.S1G378500
Ledus.S1	AUGUSTUS	transcript	30780236	30782196	.	+	.	transcript_id "Ledus.S1G378500.t1"; gene_id "Ledus.S1G378500"
Ledus.S1	AUGUSTUS	start_codon	30780236	30780238	.	+	0	transcript_id "Ledus.S1G378500.t1"; gene_id "Ledus.S1G378500"
Ledus.S1	AUGUSTUS	CDS	30780236	30780264	0.02	+	0	transcript_id "Ledus.S1G378500.t1"; gene_id "Ledus.S1G378500"
Ledus.S1	AUGUSTUS	exon	30780236	30780264	.	+	.	transcript_id "Ledus.S1G378500.t1"; gene_id "Ledus.S1G378500"
Ledus.S1	AUGUSTUS	intron	30780265	30781751	.	+	.	transcript_id "Ledus.S1G378500.t1"; gene_id "Ledus.S1G378500"
Ledus.S1	AUGUSTUS	CDS	30781752	30781770	0.64	+	1	transcript_id "Ledus.S1G378500.t1"; gene_id "Ledus.S1G378500"
Ledus.S1	AUGUSTUS	exon	30781752	30781770	.	+	.	transcript_id "Ledus.S1G378500.t1"; gene_id "Ledus.S1G378500"
Ledus.S1	AUGUSTUS	intron	30781771	30782130	.	+	.	transcript_id "Ledus.S1G378500.t1"; gene_id "Ledus.S1G378500"
Ledus.S1	AUGUSTUS	CDS	30782131	30782196	0.01	+	0	transcript_id "Ledus.S1G378500.t1"; gene_id "Ledus.S1G378500"
Ledus.S1	AUGUSTUS	exon	30782131	30782196	.	+	.	transcript_id "Ledus.S1G378500.t1"; gene_id "Ledus.S1G378500"
Ledus.S1	AUGUSTUS	stop_codon	30782197	30782199	.	+	0	transcript_id "Ledus.S1G378500.t1"; gene_id "Ledus.S1G378500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1627.t1 is derived from g8488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11476799	11478578	.	+	.	Ledus.S2G150900
Ledus.S2	AUGUSTUS	transcript	11476799	11478578	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	start_codon	11476799	11476801	.	+	0	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	CDS	11476799	11476871	0.39	+	0	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	exon	11476799	11476871	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	intron	11476872	11476976	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	CDS	11476977	11477077	0.5	+	2	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	exon	11476977	11477077	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	intron	11477078	11477181	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	CDS	11477182	11477207	0.69	+	0	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	exon	11477182	11477207	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	intron	11477208	11477305	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	CDS	11477306	11477390	1	+	1	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	exon	11477306	11477390	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	intron	11477391	11477478	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	CDS	11477479	11477688	0.99	+	0	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	exon	11477479	11477688	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	intron	11477689	11477764	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	CDS	11477765	11477896	1	+	0	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	exon	11477765	11477896	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	intron	11477897	11477986	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	CDS	11477987	11478044	1	+	0	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	exon	11477987	11478044	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	intron	11478045	11478146	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	CDS	11478147	11478220	1	+	2	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	exon	11478147	11478220	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	intron	11478221	11478348	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	CDS	11478349	11478440	1	+	0	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	exon	11478349	11478440	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	intron	11478441	11478523	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	CDS	11478524	11478578	1	+	1	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	exon	11478524	11478578	.	+	.	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
Ledus.S2	AUGUSTUS	stop_codon	11478579	11478581	.	+	0	transcript_id "Ledus.S2G150900.t1"; gene_id "Ledus.S2G150900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13044.t1 is derived from g6854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4073083	4074031	.	-	.	Ledus.S6G010600
Ledus.S6	AUGUSTUS	transcript	4073083	4074031	.	-	.	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	stop_codon	4073080	4073082	.	-	0	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	CDS	4073083	4073140	0.81	-	1	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	exon	4073083	4073140	.	-	.	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	intron	4073141	4073210	.	-	.	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	CDS	4073211	4073296	0.45	-	0	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	exon	4073211	4073296	.	-	.	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	intron	4073297	4073394	.	-	.	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	CDS	4073395	4073463	0.97	-	0	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	exon	4073395	4073463	.	-	.	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	intron	4073464	4073634	.	-	.	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	CDS	4073635	4073735	0.99	-	2	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	exon	4073635	4073735	.	-	.	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	intron	4073736	4073967	.	-	.	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	CDS	4073968	4074031	0.47	-	0	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	exon	4073968	4074031	.	-	.	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
Ledus.S6	AUGUSTUS	start_codon	4074029	4074031	.	-	0	transcript_id "Ledus.S6G010600.t1"; gene_id "Ledus.S6G010600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10904.t1 is derived from g4522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	390232	392515	.	-	.	Ledus.S4G006000
Ledus.S4	AUGUSTUS	transcript	390232	392515	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	stop_codon	390229	390231	.	-	0	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	CDS	390232	390320	1	-	2	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	exon	390232	390320	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	intron	390321	390393	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	CDS	390394	390502	1	-	0	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	exon	390394	390502	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	intron	390503	390649	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	CDS	390650	390799	1	-	0	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	exon	390650	390799	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	intron	390800	390872	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	CDS	390873	390950	1	-	0	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	exon	390873	390950	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	intron	390951	391121	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	CDS	391122	391191	1	-	1	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	exon	391122	391191	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	intron	391192	391323	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	CDS	391324	391400	1	-	0	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	exon	391324	391400	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	intron	391401	391498	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	CDS	391499	391618	1	-	0	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	exon	391499	391618	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	intron	391619	391722	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	CDS	391723	391800	1	-	0	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	exon	391723	391800	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	intron	391801	391887	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	CDS	391888	391959	1	-	0	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	exon	391888	391959	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	intron	391960	392051	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	CDS	392052	392290	1	-	2	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	exon	392052	392290	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	intron	392291	392436	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	CDS	392437	392515	0.98	-	0	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	exon	392437	392515	.	-	.	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
Ledus.S4	AUGUSTUS	start_codon	392513	392515	.	-	0	transcript_id "Ledus.S4G006000.t1"; gene_id "Ledus.S4G006000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8722.t1 is derived from g9752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1578941	1580338	.	-	.	Ledus.S3G019900
Ledus.S3	AUGUSTUS	transcript	1578941	1580338	.	-	.	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	stop_codon	1578938	1578940	.	-	0	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	CDS	1578941	1579138	0.97	-	0	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	exon	1578941	1579138	.	-	.	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	intron	1579139	1579239	.	-	.	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	CDS	1579240	1579326	1	-	0	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	exon	1579240	1579326	.	-	.	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	intron	1579327	1579418	.	-	.	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	CDS	1579419	1579634	1	-	0	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	exon	1579419	1579634	.	-	.	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	intron	1579635	1579762	.	-	.	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	CDS	1579763	1579981	1	-	0	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	exon	1579763	1579981	.	-	.	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	intron	1579982	1580119	.	-	.	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	CDS	1580120	1580338	0.78	-	0	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	exon	1580120	1580338	.	-	.	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
Ledus.S3	AUGUSTUS	start_codon	1580336	1580338	.	-	0	transcript_id "Ledus.S3G019900.t1"; gene_id "Ledus.S3G019900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2358.t1 is derived from g9221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17460298	17461674	.	-	.	Ledus.S2G224000
Ledus.S2	AUGUSTUS	transcript	17460298	17461674	.	-	.	transcript_id "Ledus.S2G224000.t1"; gene_id "Ledus.S2G224000"
Ledus.S2	AUGUSTUS	stop_codon	17460295	17460297	.	-	0	transcript_id "Ledus.S2G224000.t1"; gene_id "Ledus.S2G224000"
Ledus.S2	AUGUSTUS	CDS	17460298	17461674	1	-	0	transcript_id "Ledus.S2G224000.t1"; gene_id "Ledus.S2G224000"
Ledus.S2	AUGUSTUS	exon	17460298	17461674	.	-	.	transcript_id "Ledus.S2G224000.t1"; gene_id "Ledus.S2G224000"
Ledus.S2	AUGUSTUS	start_codon	17461672	17461674	.	-	0	transcript_id "Ledus.S2G224000.t1"; gene_id "Ledus.S2G224000"
# This transcript jg7911.t2 is derived from g12582.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7912.t1 is derived from g12583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7791422	7792040	.	-	.	Ledus.S5G069000
Ledus.S5	AUGUSTUS	transcript	7791422	7792040	.	-	.	transcript_id "Ledus.S5G069000.t1"; gene_id "Ledus.S5G069000"
Ledus.S5	AUGUSTUS	stop_codon	7791419	7791421	.	-	0	transcript_id "Ledus.S5G069000.t1"; gene_id "Ledus.S5G069000"
Ledus.S5	AUGUSTUS	CDS	7791422	7791459	1	-	2	transcript_id "Ledus.S5G069000.t1"; gene_id "Ledus.S5G069000"
Ledus.S5	AUGUSTUS	exon	7791422	7791459	.	-	.	transcript_id "Ledus.S5G069000.t1"; gene_id "Ledus.S5G069000"
Ledus.S5	AUGUSTUS	intron	7791460	7791708	.	-	.	transcript_id "Ledus.S5G069000.t1"; gene_id "Ledus.S5G069000"
Ledus.S5	AUGUSTUS	CDS	7791709	7791822	1	-	2	transcript_id "Ledus.S5G069000.t1"; gene_id "Ledus.S5G069000"
Ledus.S5	AUGUSTUS	exon	7791709	7791822	.	-	.	transcript_id "Ledus.S5G069000.t1"; gene_id "Ledus.S5G069000"
Ledus.S5	AUGUSTUS	intron	7791823	7791919	.	-	.	transcript_id "Ledus.S5G069000.t1"; gene_id "Ledus.S5G069000"
Ledus.S5	AUGUSTUS	CDS	7791920	7792040	1	-	0	transcript_id "Ledus.S5G069000.t1"; gene_id "Ledus.S5G069000"
Ledus.S5	AUGUSTUS	exon	7791920	7792040	.	-	.	transcript_id "Ledus.S5G069000.t1"; gene_id "Ledus.S5G069000"
Ledus.S5	AUGUSTUS	start_codon	7792038	7792040	.	-	0	transcript_id "Ledus.S5G069000.t1"; gene_id "Ledus.S5G069000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10136.t1 is derived from g11166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12984103	12985641	.	-	.	Ledus.S3G161300
Ledus.S3	AUGUSTUS	transcript	12984103	12985641	.	-	.	transcript_id "Ledus.S3G161300.t1"; gene_id "Ledus.S3G161300"
Ledus.S3	AUGUSTUS	stop_codon	12984100	12984102	.	-	0	transcript_id "Ledus.S3G161300.t1"; gene_id "Ledus.S3G161300"
Ledus.S3	AUGUSTUS	CDS	12984103	12985111	1	-	1	transcript_id "Ledus.S3G161300.t1"; gene_id "Ledus.S3G161300"
Ledus.S3	AUGUSTUS	exon	12984103	12985111	.	-	.	transcript_id "Ledus.S3G161300.t1"; gene_id "Ledus.S3G161300"
Ledus.S3	AUGUSTUS	intron	12985112	12985194	.	-	.	transcript_id "Ledus.S3G161300.t1"; gene_id "Ledus.S3G161300"
Ledus.S3	AUGUSTUS	CDS	12985195	12985343	1	-	0	transcript_id "Ledus.S3G161300.t1"; gene_id "Ledus.S3G161300"
Ledus.S3	AUGUSTUS	exon	12985195	12985343	.	-	.	transcript_id "Ledus.S3G161300.t1"; gene_id "Ledus.S3G161300"
Ledus.S3	AUGUSTUS	intron	12985344	12985434	.	-	.	transcript_id "Ledus.S3G161300.t1"; gene_id "Ledus.S3G161300"
Ledus.S3	AUGUSTUS	CDS	12985435	12985641	1	-	0	transcript_id "Ledus.S3G161300.t1"; gene_id "Ledus.S3G161300"
Ledus.S3	AUGUSTUS	exon	12985435	12985641	.	-	.	transcript_id "Ledus.S3G161300.t1"; gene_id "Ledus.S3G161300"
Ledus.S3	AUGUSTUS	start_codon	12985639	12985641	.	-	0	transcript_id "Ledus.S3G161300.t1"; gene_id "Ledus.S3G161300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12533.t1 is derived from g6154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12753171	12755090	.	+	.	Ledus.S4G168900
Ledus.S4	AUGUSTUS	transcript	12753171	12755090	.	+	.	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	start_codon	12753171	12753173	.	+	0	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	CDS	12753171	12753326	0.91	+	0	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	exon	12753171	12753326	.	+	.	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	intron	12753327	12753413	.	+	.	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	CDS	12753414	12753522	0.96	+	0	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	exon	12753414	12753522	.	+	.	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	intron	12753523	12753645	.	+	.	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	CDS	12753646	12753728	0.99	+	2	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	exon	12753646	12753728	.	+	.	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	intron	12753729	12753843	.	+	.	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	CDS	12753844	12753906	1	+	0	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	exon	12753844	12753906	.	+	.	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	intron	12753907	12753989	.	+	.	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	CDS	12753990	12755090	1	+	0	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	exon	12753990	12755090	.	+	.	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	stop_codon	12755091	12755093	.	+	0	transcript_id "Ledus.S4G168900.t1"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	transcript	12753268	12755090	.	+	.	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	start_codon	12753268	12753270	.	+	0	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	CDS	12753268	12753326	0.54	+	0	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	exon	12753268	12753326	.	+	.	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	intron	12753327	12753413	.	+	.	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	CDS	12753414	12753546	1	+	1	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	exon	12753414	12753546	.	+	.	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	intron	12753547	12753645	.	+	.	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	CDS	12753646	12753654	1	+	0	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	exon	12753646	12753654	.	+	.	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	intron	12753655	12753843	.	+	.	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	CDS	12753844	12753906	1	+	0	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	exon	12753844	12753906	.	+	.	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	intron	12753907	12753989	.	+	.	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	CDS	12753990	12755090	0.99	+	0	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	exon	12753990	12755090	.	+	.	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
Ledus.S4	AUGUSTUS	stop_codon	12755091	12755093	.	+	0	transcript_id "Ledus.S4G168900.t2"; gene_id "Ledus.S4G168900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2176.t1 is derived from g9039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15734829	15740269	.	-	.	Ledus.S2G205800
Ledus.S2	AUGUSTUS	transcript	15734829	15740269	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	stop_codon	15734826	15734828	.	-	0	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15734829	15734894	0.96	-	0	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15734829	15734894	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15734895	15734994	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15734995	15735052	1	-	1	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15734995	15735052	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15735053	15735155	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15735156	15735247	1	-	0	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15735156	15735247	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15735248	15735346	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15735347	15735466	1	-	0	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15735347	15735466	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15735467	15735547	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15735548	15735637	1	-	0	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15735548	15735637	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15735638	15735751	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15735752	15735844	1	-	0	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15735752	15735844	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15735845	15735930	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15735931	15736027	0.89	-	1	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15735931	15736027	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15736028	15736130	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15736131	15736249	0.89	-	0	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15736131	15736249	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15736250	15736355	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15736356	15736469	0.96	-	0	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15736356	15736469	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15736470	15736578	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15736579	15736704	0.97	-	0	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15736579	15736704	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15736705	15736927	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15736928	15737030	1	-	1	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15736928	15737030	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15737031	15737148	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15737149	15737224	1	-	2	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15737149	15737224	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15737225	15737432	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15737433	15737708	1	-	2	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15737433	15737708	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15737709	15737882	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15737883	15738027	1	-	0	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15737883	15738027	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15738028	15738151	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15738152	15738281	1	-	1	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15738152	15738281	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15738282	15738398	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15738399	15738465	1	-	2	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15738399	15738465	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15738466	15738626	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15738627	15738866	1	-	2	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15738627	15738866	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	intron	15738867	15739851	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	CDS	15739852	15740269	0.81	-	0	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	exon	15739852	15740269	.	-	.	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
Ledus.S2	AUGUSTUS	start_codon	15740267	15740269	.	-	0	transcript_id "Ledus.S2G205800.t1"; gene_id "Ledus.S2G205800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11604.t1 is derived from g5222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5476430	5477743	.	-	.	Ledus.S4G076000
Ledus.S4	AUGUSTUS	transcript	5476430	5477743	.	-	.	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	stop_codon	5476427	5476429	.	-	0	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	CDS	5476430	5476585	1	-	0	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	exon	5476430	5476585	.	-	.	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	intron	5476586	5476669	.	-	.	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	CDS	5476670	5476852	1	-	0	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	exon	5476670	5476852	.	-	.	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	intron	5476853	5476983	.	-	.	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	CDS	5476984	5477112	0.98	-	0	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	exon	5476984	5477112	.	-	.	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	intron	5477113	5477256	.	-	.	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	CDS	5477257	5477346	1	-	0	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	exon	5477257	5477346	.	-	.	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	intron	5477347	5477713	.	-	.	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	CDS	5477714	5477743	0.78	-	0	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	exon	5477714	5477743	.	-	.	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
Ledus.S4	AUGUSTUS	start_codon	5477741	5477743	.	-	0	transcript_id "Ledus.S4G076000.t1"; gene_id "Ledus.S4G076000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4143.t1 is derived from g1579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14936353	14936640	.	-	.	Ledus.S1G156400
Ledus.S1	AUGUSTUS	transcript	14936353	14936640	.	-	.	transcript_id "Ledus.S1G156400.t1"; gene_id "Ledus.S1G156400"
Ledus.S1	AUGUSTUS	stop_codon	14936350	14936352	.	-	0	transcript_id "Ledus.S1G156400.t1"; gene_id "Ledus.S1G156400"
Ledus.S1	AUGUSTUS	CDS	14936353	14936640	0.95	-	0	transcript_id "Ledus.S1G156400.t1"; gene_id "Ledus.S1G156400"
Ledus.S1	AUGUSTUS	exon	14936353	14936640	.	-	.	transcript_id "Ledus.S1G156400.t1"; gene_id "Ledus.S1G156400"
Ledus.S1	AUGUSTUS	start_codon	14936638	14936640	.	-	0	transcript_id "Ledus.S1G156400.t1"; gene_id "Ledus.S1G156400"
# This transcript jg9065.t2 is derived from g10095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9066.t1 is derived from g10096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4320930	4321523	.	+	.	Ledus.S3G054300
Ledus.S3	AUGUSTUS	transcript	4320930	4321523	.	+	.	transcript_id "Ledus.S3G054300.t1"; gene_id "Ledus.S3G054300"
Ledus.S3	AUGUSTUS	start_codon	4320930	4320932	.	+	0	transcript_id "Ledus.S3G054300.t1"; gene_id "Ledus.S3G054300"
Ledus.S3	AUGUSTUS	CDS	4320930	4321523	0.27	+	0	transcript_id "Ledus.S3G054300.t1"; gene_id "Ledus.S3G054300"
Ledus.S3	AUGUSTUS	exon	4320930	4321523	.	+	.	transcript_id "Ledus.S3G054300.t1"; gene_id "Ledus.S3G054300"
Ledus.S3	AUGUSTUS	stop_codon	4321524	4321526	.	+	0	transcript_id "Ledus.S3G054300.t1"; gene_id "Ledus.S3G054300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6320.t1 is derived from g3763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30480721	30482449	.	+	.	Ledus.S1G374100
Ledus.S1	AUGUSTUS	transcript	30480721	30482449	.	+	.	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	start_codon	30480721	30480723	.	+	0	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	CDS	30480721	30480884	0.6	+	0	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	exon	30480721	30480884	.	+	.	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	intron	30480885	30481053	.	+	.	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	CDS	30481054	30481092	0.89	+	1	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	exon	30481054	30481092	.	+	.	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	intron	30481093	30481282	.	+	.	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	CDS	30481283	30481728	0.99	+	1	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	exon	30481283	30481728	.	+	.	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	intron	30481729	30481816	.	+	.	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	CDS	30481817	30481886	1	+	2	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	exon	30481817	30481886	.	+	.	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	intron	30481887	30481968	.	+	.	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	CDS	30481969	30482131	0.8	+	1	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	exon	30481969	30482131	.	+	.	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	intron	30482132	30482233	.	+	.	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	CDS	30482234	30482449	0.8	+	0	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	exon	30482234	30482449	.	+	.	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
Ledus.S1	AUGUSTUS	stop_codon	30482450	30482452	.	+	0	transcript_id "Ledus.S1G374100.t1"; gene_id "Ledus.S1G374100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8571.t1 is derived from g9601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	225598	227705	.	+	.	Ledus.S3G004800
Ledus.S3	AUGUSTUS	transcript	225598	227705	.	+	.	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	start_codon	225598	225600	.	+	0	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	CDS	225598	225942	0.41	+	0	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	exon	225598	225942	.	+	.	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	intron	225943	226017	.	+	.	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	CDS	226018	226444	1	+	0	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	exon	226018	226444	.	+	.	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	intron	226445	226520	.	+	.	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	CDS	226521	227041	0.47	+	2	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	exon	226521	227041	.	+	.	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	intron	227042	227417	.	+	.	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	CDS	227418	227558	0.55	+	0	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	exon	227418	227558	.	+	.	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	intron	227559	227693	.	+	.	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	CDS	227694	227705	0.67	+	0	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	exon	227694	227705	.	+	.	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
Ledus.S3	AUGUSTUS	stop_codon	227706	227708	.	+	0	transcript_id "Ledus.S3G004800.t1"; gene_id "Ledus.S3G004800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4424.t1 is derived from g1860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17044586	17050927	.	-	.	Ledus.S1G184500
Ledus.S1	AUGUSTUS	transcript	17044586	17050927	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	stop_codon	17044583	17044585	.	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17044586	17044672	0.4	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17044586	17044672	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17044673	17044765	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17044766	17045004	1	-	2	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17044766	17045004	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17045005	17045082	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17045083	17045575	0.85	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17045083	17045575	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17045576	17045678	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17045679	17045762	1	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17045679	17045762	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17045763	17045849	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17045850	17046023	1	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17045850	17046023	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17046024	17046170	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17046171	17046262	1	-	2	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17046171	17046262	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17046263	17046405	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17046406	17046616	1	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17046406	17046616	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17046617	17046695	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17046696	17046881	1	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17046696	17046881	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17046882	17047005	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17047006	17047098	1	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17047006	17047098	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17047099	17047183	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17047184	17047778	1	-	1	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17047184	17047778	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17047779	17047878	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17047879	17048006	1	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17047879	17048006	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17048007	17048101	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17048102	17048392	0.57	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17048102	17048392	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17048393	17048501	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17048502	17048621	0.9	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17048502	17048621	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17048622	17048739	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17048740	17048837	1	-	2	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17048740	17048837	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17048838	17049015	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17049016	17049073	1	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17049016	17049073	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17049074	17049177	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17049178	17049286	1	-	1	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17049178	17049286	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17049287	17049375	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17049376	17049412	1	-	2	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17049376	17049412	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17049413	17049629	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17049630	17049723	1	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17049630	17049723	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17049724	17049821	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17049822	17049944	1	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17049822	17049944	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17049945	17050153	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17050154	17050214	1	-	1	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17050154	17050214	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	intron	17050215	17050613	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	CDS	17050614	17050927	0.8	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	exon	17050614	17050927	.	-	.	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
Ledus.S1	AUGUSTUS	start_codon	17050925	17050927	.	-	0	transcript_id "Ledus.S1G184500.t1"; gene_id "Ledus.S1G184500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9269.t1 is derived from g10299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5726264	5726636	.	-	.	Ledus.S3G074600
Ledus.S3	AUGUSTUS	transcript	5726264	5726636	.	-	.	transcript_id "Ledus.S3G074600.t1"; gene_id "Ledus.S3G074600"
Ledus.S3	AUGUSTUS	stop_codon	5726261	5726263	.	-	0	transcript_id "Ledus.S3G074600.t1"; gene_id "Ledus.S3G074600"
Ledus.S3	AUGUSTUS	CDS	5726264	5726315	0.6	-	1	transcript_id "Ledus.S3G074600.t1"; gene_id "Ledus.S3G074600"
Ledus.S3	AUGUSTUS	exon	5726264	5726315	.	-	.	transcript_id "Ledus.S3G074600.t1"; gene_id "Ledus.S3G074600"
Ledus.S3	AUGUSTUS	intron	5726316	5726415	.	-	.	transcript_id "Ledus.S3G074600.t1"; gene_id "Ledus.S3G074600"
Ledus.S3	AUGUSTUS	CDS	5726416	5726636	0.48	-	0	transcript_id "Ledus.S3G074600.t1"; gene_id "Ledus.S3G074600"
Ledus.S3	AUGUSTUS	exon	5726416	5726636	.	-	.	transcript_id "Ledus.S3G074600.t1"; gene_id "Ledus.S3G074600"
Ledus.S3	AUGUSTUS	start_codon	5726634	5726636	.	-	0	transcript_id "Ledus.S3G074600.t1"; gene_id "Ledus.S3G074600"
# This transcript jg11722.t2 is derived from g5341.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11723.t1 is derived from g5342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6273026	6274957	.	+	.	Ledus.S4G087900
Ledus.S4	AUGUSTUS	transcript	6273026	6274957	.	+	.	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	start_codon	6273026	6273028	.	+	0	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	CDS	6273026	6273874	0.98	+	0	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	exon	6273026	6273874	.	+	.	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	intron	6273875	6274032	.	+	.	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	CDS	6274033	6274201	1	+	0	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	exon	6274033	6274201	.	+	.	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	intron	6274202	6274315	.	+	.	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	CDS	6274316	6274614	0.97	+	2	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	exon	6274316	6274614	.	+	.	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	intron	6274615	6274697	.	+	.	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	CDS	6274698	6274807	1	+	0	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	exon	6274698	6274807	.	+	.	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	intron	6274808	6274890	.	+	.	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	CDS	6274891	6274957	1	+	1	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	exon	6274891	6274957	.	+	.	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
Ledus.S4	AUGUSTUS	stop_codon	6274958	6274960	.	+	0	transcript_id "Ledus.S4G087900.t1"; gene_id "Ledus.S4G087900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6386.t1 is derived from g3829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30961869	30964160	.	-	.	Ledus.S1G380700
Ledus.S1	AUGUSTUS	transcript	30961869	30964160	.	-	.	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	stop_codon	30961866	30961868	.	-	0	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	CDS	30961869	30961888	0.99	-	2	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	exon	30961869	30961888	.	-	.	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	intron	30961889	30962038	.	-	.	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	CDS	30962039	30962141	0.99	-	0	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	exon	30962039	30962141	.	-	.	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	intron	30962142	30962221	.	-	.	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	CDS	30962222	30962368	0.9	-	0	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	exon	30962222	30962368	.	-	.	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	intron	30962369	30962473	.	-	.	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	CDS	30962474	30963649	0.9	-	0	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	exon	30962474	30963649	.	-	.	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	intron	30963650	30963753	.	-	.	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	CDS	30963754	30963903	0.7	-	0	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	exon	30963754	30963903	.	-	.	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	intron	30963904	30964004	.	-	.	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	CDS	30964005	30964160	0.81	-	0	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	exon	30964005	30964160	.	-	.	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
Ledus.S1	AUGUSTUS	start_codon	30964158	30964160	.	-	0	transcript_id "Ledus.S1G380700.t1"; gene_id "Ledus.S1G380700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10358.t1 is derived from g11388.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14379803	14383834	.	+	.	Ledus.S3G183500
Ledus.S3	AUGUSTUS	transcript	14379803	14383834	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	start_codon	14379803	14379805	.	+	0	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14379803	14379926	0.97	+	0	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14379803	14379926	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14379927	14380091	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14380092	14380134	0.69	+	2	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14380092	14380134	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14380135	14380238	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14380239	14380256	0.65	+	1	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14380239	14380256	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14380257	14380402	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14380403	14380453	1	+	1	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14380403	14380453	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14380454	14380602	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14380603	14380788	0.81	+	1	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14380603	14380788	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14380789	14380901	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14380902	14380977	1	+	1	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14380902	14380977	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14380978	14381112	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14381113	14381160	1	+	0	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14381113	14381160	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14381161	14381261	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14381262	14381306	1	+	0	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14381262	14381306	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14381307	14381379	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14381380	14381479	1	+	0	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14381380	14381479	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14381480	14381556	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14381557	14381608	0.99	+	2	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14381557	14381608	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14381609	14381716	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14381717	14381758	1	+	1	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14381717	14381758	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14381759	14381846	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14381847	14381908	0.94	+	1	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14381847	14381908	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14381909	14382016	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14382017	14382115	0.91	+	2	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14382017	14382115	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14382116	14382225	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14382226	14382299	0.99	+	2	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14382226	14382299	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14382300	14382383	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14382384	14382453	1	+	0	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14382384	14382453	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14382454	14382551	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14382552	14382617	1	+	2	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14382552	14382617	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14382618	14382716	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14382717	14382805	1	+	2	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14382717	14382805	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	intron	14382806	14383327	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	CDS	14383328	14383834	0.74	+	0	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	exon	14383328	14383834	.	+	.	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
Ledus.S3	AUGUSTUS	stop_codon	14383835	14383837	.	+	0	transcript_id "Ledus.S3G183500.t1"; gene_id "Ledus.S3G183500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6964.t1 is derived from g6495.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	414753	416225	.	-	.	Ledus.C7G002500
Ledus.C7	AUGUSTUS	transcript	414753	416225	.	-	.	transcript_id "Ledus.C7G002500.t1"; gene_id "Ledus.C7G002500"
Ledus.C7	AUGUSTUS	stop_codon	414750	414752	.	-	0	transcript_id "Ledus.C7G002500.t1"; gene_id "Ledus.C7G002500"
Ledus.C7	AUGUSTUS	CDS	414753	414754	1	-	2	transcript_id "Ledus.C7G002500.t1"; gene_id "Ledus.C7G002500"
Ledus.C7	AUGUSTUS	exon	414753	414754	.	-	.	transcript_id "Ledus.C7G002500.t1"; gene_id "Ledus.C7G002500"
Ledus.C7	AUGUSTUS	intron	414755	414838	.	-	.	transcript_id "Ledus.C7G002500.t1"; gene_id "Ledus.C7G002500"
Ledus.C7	AUGUSTUS	CDS	414839	414890	0.52	-	0	transcript_id "Ledus.C7G002500.t1"; gene_id "Ledus.C7G002500"
Ledus.C7	AUGUSTUS	exon	414839	414890	.	-	.	transcript_id "Ledus.C7G002500.t1"; gene_id "Ledus.C7G002500"
Ledus.C7	AUGUSTUS	intron	414891	414953	.	-	.	transcript_id "Ledus.C7G002500.t1"; gene_id "Ledus.C7G002500"
Ledus.C7	AUGUSTUS	CDS	414954	416225	0.52	-	0	transcript_id "Ledus.C7G002500.t1"; gene_id "Ledus.C7G002500"
Ledus.C7	AUGUSTUS	exon	414954	416225	.	-	.	transcript_id "Ledus.C7G002500.t1"; gene_id "Ledus.C7G002500"
Ledus.C7	AUGUSTUS	start_codon	416223	416225	.	-	0	transcript_id "Ledus.C7G002500.t1"; gene_id "Ledus.C7G002500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg827.t1 is derived from g7688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5327733	5330243	.	-	.	Ledus.S2G070900
Ledus.S2	AUGUSTUS	transcript	5327733	5330243	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	stop_codon	5327730	5327732	.	-	0	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	CDS	5327733	5328071	1	-	0	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	exon	5327733	5328071	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	intron	5328072	5328182	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	CDS	5328183	5328506	0.96	-	0	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	exon	5328183	5328506	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	intron	5328507	5328671	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	CDS	5328672	5328821	1	-	0	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	exon	5328672	5328821	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	intron	5328822	5328952	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	CDS	5328953	5329064	1	-	1	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	exon	5328953	5329064	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	intron	5329065	5329159	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	CDS	5329160	5329202	1	-	2	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	exon	5329160	5329202	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	intron	5329203	5329286	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	CDS	5329287	5329347	1	-	0	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	exon	5329287	5329347	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	intron	5329348	5329521	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	CDS	5329522	5329785	1	-	0	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	exon	5329522	5329785	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	intron	5329786	5329996	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	CDS	5329997	5330134	0.94	-	0	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	exon	5329997	5330134	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	intron	5330135	5330213	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	CDS	5330214	5330243	0.91	-	0	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	exon	5330214	5330243	.	-	.	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
Ledus.S2	AUGUSTUS	start_codon	5330241	5330243	.	-	0	transcript_id "Ledus.S2G070900.t1"; gene_id "Ledus.S2G070900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1866.t1 is derived from g8729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13004352	13005752	.	+	.	Ledus.S2G174800
Ledus.S2	AUGUSTUS	transcript	13005309	13005752	.	+	.	transcript_id "Ledus.S2G174800.t1"; gene_id "Ledus.S2G174800"
Ledus.S2	AUGUSTUS	start_codon	13005309	13005311	.	+	0	transcript_id "Ledus.S2G174800.t1"; gene_id "Ledus.S2G174800"
Ledus.S2	AUGUSTUS	CDS	13005309	13005752	0.63	+	0	transcript_id "Ledus.S2G174800.t1"; gene_id "Ledus.S2G174800"
Ledus.S2	AUGUSTUS	exon	13005309	13005752	.	+	.	transcript_id "Ledus.S2G174800.t1"; gene_id "Ledus.S2G174800"
Ledus.S2	AUGUSTUS	stop_codon	13005753	13005755	.	+	0	transcript_id "Ledus.S2G174800.t1"; gene_id "Ledus.S2G174800"
Ledus.S2	AUGUSTUS	transcript	13004352	13005752	.	+	.	transcript_id "Ledus.S2G174800.t2"; gene_id "Ledus.S2G174800"
Ledus.S2	AUGUSTUS	start_codon	13004352	13004354	.	+	0	transcript_id "Ledus.S2G174800.t2"; gene_id "Ledus.S2G174800"
Ledus.S2	AUGUSTUS	CDS	13004352	13005752	0.19	+	0	transcript_id "Ledus.S2G174800.t2"; gene_id "Ledus.S2G174800"
Ledus.S2	AUGUSTUS	exon	13004352	13005752	.	+	.	transcript_id "Ledus.S2G174800.t2"; gene_id "Ledus.S2G174800"
Ledus.S2	AUGUSTUS	stop_codon	13005753	13005755	.	+	0	transcript_id "Ledus.S2G174800.t2"; gene_id "Ledus.S2G174800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8890.t1 is derived from g9920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2851272	2854373	.	-	.	Ledus.S3G036700
Ledus.S3	AUGUSTUS	transcript	2851272	2854373	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	stop_codon	2851269	2851271	.	-	0	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	CDS	2851272	2851368	0.6	-	1	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	exon	2851272	2851368	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	intron	2851369	2851542	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	CDS	2851543	2851673	0.77	-	0	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	exon	2851543	2851673	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	intron	2851674	2851837	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	CDS	2851838	2851882	1	-	0	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	exon	2851838	2851882	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	intron	2851883	2852366	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	CDS	2852367	2852547	1	-	1	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	exon	2852367	2852547	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	intron	2852548	2852643	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	CDS	2852644	2852772	1	-	1	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	exon	2852644	2852772	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	intron	2852773	2852907	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	CDS	2852908	2853071	1	-	0	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	exon	2852908	2853071	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	intron	2853072	2853163	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	CDS	2853164	2853307	1	-	0	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	exon	2853164	2853307	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	intron	2853308	2853605	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	CDS	2853606	2854373	0.6	-	0	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	exon	2853606	2854373	.	-	.	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
Ledus.S3	AUGUSTUS	start_codon	2854371	2854373	.	-	0	transcript_id "Ledus.S3G036700.t1"; gene_id "Ledus.S3G036700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13097.t1 is derived from g6907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5452541	5453925	.	+	.	Ledus.S6G015900
Ledus.S6	AUGUSTUS	transcript	5452541	5453925	.	+	.	transcript_id "Ledus.S6G015900.t1"; gene_id "Ledus.S6G015900"
Ledus.S6	AUGUSTUS	start_codon	5452541	5452543	.	+	0	transcript_id "Ledus.S6G015900.t1"; gene_id "Ledus.S6G015900"
Ledus.S6	AUGUSTUS	CDS	5452541	5452780	0.51	+	0	transcript_id "Ledus.S6G015900.t1"; gene_id "Ledus.S6G015900"
Ledus.S6	AUGUSTUS	exon	5452541	5452780	.	+	.	transcript_id "Ledus.S6G015900.t1"; gene_id "Ledus.S6G015900"
Ledus.S6	AUGUSTUS	intron	5452781	5453454	.	+	.	transcript_id "Ledus.S6G015900.t1"; gene_id "Ledus.S6G015900"
Ledus.S6	AUGUSTUS	CDS	5453455	5453925	0.58	+	0	transcript_id "Ledus.S6G015900.t1"; gene_id "Ledus.S6G015900"
Ledus.S6	AUGUSTUS	exon	5453455	5453925	.	+	.	transcript_id "Ledus.S6G015900.t1"; gene_id "Ledus.S6G015900"
Ledus.S6	AUGUSTUS	stop_codon	5453926	5453928	.	+	0	transcript_id "Ledus.S6G015900.t1"; gene_id "Ledus.S6G015900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12250.t1 is derived from g5870.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10636749	10638717	.	-	.	Ledus.S4G140600
Ledus.S4	AUGUSTUS	transcript	10636749	10638717	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	stop_codon	10636746	10636748	.	-	0	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	CDS	10636749	10636865	1	-	0	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	exon	10636749	10636865	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	intron	10636866	10636998	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	CDS	10636999	10637091	1	-	0	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	exon	10636999	10637091	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	intron	10637092	10637216	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	CDS	10637217	10637321	1	-	0	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	exon	10637217	10637321	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	intron	10637322	10637430	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	CDS	10637431	10637523	1	-	0	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	exon	10637431	10637523	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	intron	10637524	10637627	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	CDS	10637628	10637678	1	-	0	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	exon	10637628	10637678	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	intron	10637679	10637764	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	CDS	10637765	10637800	1	-	0	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	exon	10637765	10637800	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	intron	10637801	10638031	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	CDS	10638032	10638092	1	-	1	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	exon	10638032	10638092	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	intron	10638093	10638271	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	CDS	10638272	10638321	1	-	0	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	exon	10638272	10638321	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	intron	10638322	10638477	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	CDS	10638478	10638717	0.97	-	0	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	exon	10638478	10638717	.	-	.	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
Ledus.S4	AUGUSTUS	start_codon	10638715	10638717	.	-	0	transcript_id "Ledus.S4G140600.t1"; gene_id "Ledus.S4G140600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11776.t1 is derived from g5395.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6729811	6732237	.	-	.	Ledus.S4G093200
Ledus.S4	AUGUSTUS	transcript	6729811	6732237	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	stop_codon	6729808	6729810	.	-	0	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6729811	6729880	0.8	-	1	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6729811	6729880	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6729881	6729979	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6729980	6730058	0.78	-	2	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6729980	6730058	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6730059	6730144	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6730145	6730226	0.87	-	0	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6730145	6730226	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6730227	6730329	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6730330	6730405	1	-	1	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6730330	6730405	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6730406	6730505	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6730506	6730592	1	-	1	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6730506	6730592	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6730593	6730719	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6730720	6730785	1	-	1	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6730720	6730785	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6730786	6730878	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6730879	6730949	0.99	-	0	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6730879	6730949	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6730950	6731062	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6731063	6731149	1	-	0	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6731063	6731149	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6731150	6731235	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6731236	6731349	1	-	0	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6731236	6731349	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6731350	6731447	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6731448	6731514	1	-	1	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6731448	6731514	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6731515	6731588	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6731589	6731650	1	-	0	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6731589	6731650	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6731651	6731775	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6731776	6731850	1	-	0	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6731776	6731850	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6731851	6731945	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6731946	6731993	1	-	0	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6731946	6731993	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6731994	6732081	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6732082	6732237	0.9	-	0	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6732082	6732237	.	-	.	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	start_codon	6732235	6732237	.	-	0	transcript_id "Ledus.S4G093200.t1"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	transcript	6729811	6732237	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	stop_codon	6729808	6729810	.	-	0	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6729811	6729886	0.54	-	1	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6729811	6729886	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6729887	6729979	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6729980	6730058	0.52	-	2	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6729980	6730058	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6730059	6730144	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6730145	6730226	0.67	-	0	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6730145	6730226	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6730227	6730329	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6730330	6730405	1	-	1	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6730330	6730405	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6730406	6730505	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6730506	6730592	1	-	1	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6730506	6730592	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6730593	6730719	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6730720	6730785	1	-	1	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6730720	6730785	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6730786	6730878	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6730879	6730949	1	-	0	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6730879	6730949	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6730950	6731062	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6731063	6731149	1	-	0	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6731063	6731149	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6731150	6731235	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6731236	6731349	1	-	0	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6731236	6731349	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6731350	6731447	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6731448	6731514	1	-	1	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6731448	6731514	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6731515	6731588	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6731589	6731650	1	-	0	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6731589	6731650	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6731651	6731775	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6731776	6731850	1	-	0	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6731776	6731850	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6731851	6731945	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6731946	6731993	1	-	0	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6731946	6731993	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	intron	6731994	6732081	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	CDS	6732082	6732237	0.94	-	0	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	exon	6732082	6732237	.	-	.	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
Ledus.S4	AUGUSTUS	start_codon	6732235	6732237	.	-	0	transcript_id "Ledus.S4G093200.t2"; gene_id "Ledus.S4G093200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12312.t1 is derived from g5933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11167583	11171247	.	+	.	Ledus.S4G146800
Ledus.S4	AUGUSTUS	transcript	11167583	11171247	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	start_codon	11167583	11167585	.	+	0	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11167583	11167665	0.69	+	0	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11167583	11167665	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	intron	11167666	11168427	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11168428	11168493	0.88	+	1	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11168428	11168493	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	intron	11168494	11168619	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11168620	11168861	0.88	+	1	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11168620	11168861	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	intron	11168862	11169012	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11169013	11169087	1	+	2	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11169013	11169087	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	intron	11169088	11169214	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11169215	11169273	0.82	+	2	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11169215	11169273	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	intron	11169274	11169349	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11169350	11169521	0.55	+	0	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11169350	11169521	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	intron	11169522	11169613	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11169614	11169707	0.64	+	2	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11169614	11169707	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	intron	11169708	11169812	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11169813	11169879	0.57	+	1	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11169813	11169879	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	intron	11169880	11170031	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11170032	11170130	1	+	0	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11170032	11170130	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	intron	11170131	11170287	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11170288	11170377	1	+	0	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11170288	11170377	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	intron	11170378	11170487	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11170488	11170642	1	+	0	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11170488	11170642	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	intron	11170643	11170757	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11170758	11170859	1	+	1	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11170758	11170859	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	intron	11170860	11170988	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	CDS	11170989	11171247	0.95	+	1	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	exon	11170989	11171247	.	+	.	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
Ledus.S4	AUGUSTUS	stop_codon	11171248	11171250	.	+	0	transcript_id "Ledus.S4G146800.t1"; gene_id "Ledus.S4G146800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6053.t1 is derived from g3496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28728709	28729881	.	+	.	Ledus.S1G347400
Ledus.S1	AUGUSTUS	transcript	28728709	28729881	.	+	.	transcript_id "Ledus.S1G347400.t1"; gene_id "Ledus.S1G347400"
Ledus.S1	AUGUSTUS	start_codon	28728709	28728711	.	+	0	transcript_id "Ledus.S1G347400.t1"; gene_id "Ledus.S1G347400"
Ledus.S1	AUGUSTUS	CDS	28728709	28729881	0.61	+	0	transcript_id "Ledus.S1G347400.t1"; gene_id "Ledus.S1G347400"
Ledus.S1	AUGUSTUS	exon	28728709	28729881	.	+	.	transcript_id "Ledus.S1G347400.t1"; gene_id "Ledus.S1G347400"
Ledus.S1	AUGUSTUS	stop_codon	28729882	28729884	.	+	0	transcript_id "Ledus.S1G347400.t1"; gene_id "Ledus.S1G347400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2839.t1 is derived from g273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4120904	4122703	.	+	.	Ledus.S1G026000
Ledus.S1	AUGUSTUS	transcript	4120904	4122703	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	start_codon	4120904	4120906	.	+	0	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	CDS	4120904	4121142	0.98	+	0	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	exon	4120904	4121142	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	intron	4121143	4121217	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	CDS	4121218	4121344	0.99	+	1	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	exon	4121218	4121344	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	intron	4121345	4121448	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	CDS	4121449	4121574	0.92	+	0	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	exon	4121449	4121574	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	intron	4121575	4121681	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	CDS	4121682	4121840	0.98	+	0	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	exon	4121682	4121840	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	intron	4121841	4121929	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	CDS	4121930	4122048	1	+	0	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	exon	4121930	4122048	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	intron	4122049	4122152	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	CDS	4122153	4122344	1	+	1	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	exon	4122153	4122344	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	intron	4122345	4122426	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	CDS	4122427	4122517	1	+	1	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	exon	4122427	4122517	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	intron	4122518	4122613	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	CDS	4122614	4122703	0.73	+	0	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	exon	4122614	4122703	.	+	.	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
Ledus.S1	AUGUSTUS	stop_codon	4122704	4122706	.	+	0	transcript_id "Ledus.S1G026000.t1"; gene_id "Ledus.S1G026000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7705.t1 is derived from g12376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5316852	5318283	.	-	.	Ledus.S5G048300
Ledus.S5	AUGUSTUS	transcript	5316852	5318283	.	-	.	transcript_id "Ledus.S5G048300.t1"; gene_id "Ledus.S5G048300"
Ledus.S5	AUGUSTUS	stop_codon	5316849	5316851	.	-	0	transcript_id "Ledus.S5G048300.t1"; gene_id "Ledus.S5G048300"
Ledus.S5	AUGUSTUS	CDS	5316852	5316983	0.96	-	0	transcript_id "Ledus.S5G048300.t1"; gene_id "Ledus.S5G048300"
Ledus.S5	AUGUSTUS	exon	5316852	5316983	.	-	.	transcript_id "Ledus.S5G048300.t1"; gene_id "Ledus.S5G048300"
Ledus.S5	AUGUSTUS	intron	5316984	5318046	.	-	.	transcript_id "Ledus.S5G048300.t1"; gene_id "Ledus.S5G048300"
Ledus.S5	AUGUSTUS	CDS	5318047	5318283	0.01	-	0	transcript_id "Ledus.S5G048300.t1"; gene_id "Ledus.S5G048300"
Ledus.S5	AUGUSTUS	exon	5318047	5318283	.	-	.	transcript_id "Ledus.S5G048300.t1"; gene_id "Ledus.S5G048300"
Ledus.S5	AUGUSTUS	start_codon	5318281	5318283	.	-	0	transcript_id "Ledus.S5G048300.t1"; gene_id "Ledus.S5G048300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg480.t1 is derived from g7341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2823792	2825682	.	+	.	Ledus.S2G036200
Ledus.S2	AUGUSTUS	transcript	2823792	2825682	.	+	.	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	start_codon	2823792	2823794	.	+	0	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	CDS	2823792	2824071	0.97	+	0	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	exon	2823792	2824071	.	+	.	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	intron	2824072	2824144	.	+	.	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	CDS	2824145	2824368	1	+	2	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	exon	2824145	2824368	.	+	.	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	intron	2824369	2824460	.	+	.	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	CDS	2824461	2824720	1	+	0	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	exon	2824461	2824720	.	+	.	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	intron	2824721	2824787	.	+	.	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	CDS	2824788	2825184	1	+	1	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	exon	2824788	2825184	.	+	.	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	intron	2825185	2825253	.	+	.	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	CDS	2825254	2825682	0.98	+	0	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	exon	2825254	2825682	.	+	.	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
Ledus.S2	AUGUSTUS	stop_codon	2825683	2825685	.	+	0	transcript_id "Ledus.S2G036200.t1"; gene_id "Ledus.S2G036200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg641.t1 is derived from g7502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3839748	3842597	.	-	.	Ledus.S2G052300
Ledus.S2	AUGUSTUS	transcript	3839748	3842597	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	stop_codon	3839745	3839747	.	-	0	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	CDS	3839748	3839785	1	-	2	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	exon	3839748	3839785	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	intron	3839786	3839926	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	CDS	3839927	3840008	0.98	-	0	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	exon	3839927	3840008	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	intron	3840009	3840290	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	CDS	3840291	3840538	0.67	-	2	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	exon	3840291	3840538	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	intron	3840539	3840642	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	CDS	3840643	3840753	0.96	-	2	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	exon	3840643	3840753	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	intron	3840754	3840867	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	CDS	3840868	3840937	0.97	-	0	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	exon	3840868	3840937	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	intron	3840938	3841119	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	CDS	3841120	3841341	1	-	0	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	exon	3841120	3841341	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	intron	3841342	3841495	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	CDS	3841496	3841984	1	-	0	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	exon	3841496	3841984	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	intron	3841985	3842120	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	CDS	3842121	3842226	0.44	-	1	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	exon	3842121	3842226	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	intron	3842227	3842511	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	CDS	3842512	3842597	0.79	-	0	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	exon	3842512	3842597	.	-	.	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
Ledus.S2	AUGUSTUS	start_codon	3842595	3842597	.	-	0	transcript_id "Ledus.S2G052300.t1"; gene_id "Ledus.S2G052300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2653.t1 is derived from g86.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1213676	1219713	.	-	.	Ledus.S1G007400
Ledus.S1	AUGUSTUS	transcript	1213676	1219713	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	stop_codon	1213673	1213675	.	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1213676	1213694	1	-	1	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1213676	1213694	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1213695	1213786	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1213787	1213805	1	-	2	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1213787	1213805	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1213806	1213901	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1213902	1213957	0.99	-	1	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1213902	1213957	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1213958	1214087	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1214088	1214210	1	-	1	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1214088	1214210	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1214211	1214319	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1214320	1214622	1	-	1	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1214320	1214622	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1214623	1214699	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1214700	1215019	0.95	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1214700	1215019	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1215020	1215131	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1215132	1215362	1	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1215132	1215362	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1215363	1215552	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1215553	1215729	1	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1215553	1215729	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1215730	1215824	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1215825	1216433	1	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1215825	1216433	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1216434	1216523	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1216524	1216847	1	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1216524	1216847	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1216848	1216922	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1216923	1217352	0.98	-	1	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1216923	1217352	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1217353	1217607	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1217608	1217846	1	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1217608	1217846	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1217847	1218063	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1218064	1218123	1	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1218064	1218123	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1218124	1218199	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1218200	1218333	1	-	2	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1218200	1218333	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1218334	1218430	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1218431	1218557	1	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1218431	1218557	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1218558	1218647	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1218648	1218746	1	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1218648	1218746	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1218747	1218822	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1218823	1218922	1	-	1	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1218823	1218922	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1218923	1219028	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1219029	1219099	1	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1219029	1219099	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1219100	1219190	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1219191	1219262	1	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1219191	1219262	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1219263	1219345	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1219346	1219474	1	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1219346	1219474	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1219475	1219563	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1219564	1219713	1	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1219564	1219713	.	-	.	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	start_codon	1219711	1219713	.	-	0	transcript_id "Ledus.S1G007400.t1"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	transcript	1213676	1219713	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	stop_codon	1213673	1213675	.	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1213676	1213694	1	-	1	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1213676	1213694	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1213695	1213786	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1213787	1213805	1	-	2	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1213787	1213805	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1213806	1213901	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1213902	1213957	0.98	-	1	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1213902	1213957	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1213958	1214087	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1214088	1214210	1	-	1	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1214088	1214210	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1214211	1214319	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1214320	1214622	1	-	1	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1214320	1214622	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1214623	1214699	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1214700	1215019	0.95	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1214700	1215019	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1215020	1215131	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1215132	1215362	1	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1215132	1215362	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1215363	1215552	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1215553	1215729	1	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1215553	1215729	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1215730	1215824	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1215825	1216433	1	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1215825	1216433	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1216434	1216523	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1216524	1216847	1	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1216524	1216847	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1216848	1216922	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1216923	1217352	0.99	-	1	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1216923	1217352	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1217353	1217441	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1217442	1217490	0.42	-	2	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1217442	1217490	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1217491	1217668	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1217669	1217846	0.74	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1217669	1217846	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1217847	1218063	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1218064	1218123	1	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1218064	1218123	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1218124	1218199	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1218200	1218333	1	-	2	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1218200	1218333	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1218334	1218430	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1218431	1218557	1	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1218431	1218557	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1218558	1218647	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1218648	1218746	1	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1218648	1218746	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1218747	1218822	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1218823	1218922	1	-	1	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1218823	1218922	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1218923	1219028	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1219029	1219099	1	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1219029	1219099	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1219100	1219190	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1219191	1219262	1	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1219191	1219262	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1219263	1219345	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1219346	1219474	1	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1219346	1219474	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	intron	1219475	1219563	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	CDS	1219564	1219713	0.98	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	exon	1219564	1219713	.	-	.	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
Ledus.S1	AUGUSTUS	start_codon	1219711	1219713	.	-	0	transcript_id "Ledus.S1G007400.t2"; gene_id "Ledus.S1G007400"
# This transcript jg8333.t2 is derived from g13005.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8334.t1 is derived from g13006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10805522	10806113	.	-	.	Ledus.S5G111200
Ledus.S5	AUGUSTUS	transcript	10805522	10806113	.	-	.	transcript_id "Ledus.S5G111200.t1"; gene_id "Ledus.S5G111200"
Ledus.S5	AUGUSTUS	stop_codon	10805519	10805521	.	-	0	transcript_id "Ledus.S5G111200.t1"; gene_id "Ledus.S5G111200"
Ledus.S5	AUGUSTUS	CDS	10805522	10805531	0.61	-	1	transcript_id "Ledus.S5G111200.t1"; gene_id "Ledus.S5G111200"
Ledus.S5	AUGUSTUS	exon	10805522	10805531	.	-	.	transcript_id "Ledus.S5G111200.t1"; gene_id "Ledus.S5G111200"
Ledus.S5	AUGUSTUS	intron	10805532	10805853	.	-	.	transcript_id "Ledus.S5G111200.t1"; gene_id "Ledus.S5G111200"
Ledus.S5	AUGUSTUS	CDS	10805854	10806113	0.29	-	0	transcript_id "Ledus.S5G111200.t1"; gene_id "Ledus.S5G111200"
Ledus.S5	AUGUSTUS	exon	10805854	10806113	.	-	.	transcript_id "Ledus.S5G111200.t1"; gene_id "Ledus.S5G111200"
Ledus.S5	AUGUSTUS	start_codon	10806111	10806113	.	-	0	transcript_id "Ledus.S5G111200.t1"; gene_id "Ledus.S5G111200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3050.t1 is derived from g485.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5521821	5523749	.	-	.	Ledus.S1G047100
Ledus.S1	AUGUSTUS	transcript	5521821	5523749	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	stop_codon	5521818	5521820	.	-	0	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5521821	5521922	1	-	0	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5521821	5521922	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5521923	5522000	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5522001	5522057	1	-	0	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5522001	5522057	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5522058	5522138	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5522139	5522234	1	-	0	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5522139	5522234	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5522235	5522337	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5522338	5522391	0.96	-	0	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5522338	5522391	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5522392	5522483	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5522484	5522642	1	-	0	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5522484	5522642	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5522643	5522731	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5522732	5523248	1	-	1	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5522732	5523248	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5523249	5523418	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5523419	5523586	0.93	-	1	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5523419	5523586	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5523587	5523720	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5523721	5523749	0.48	-	0	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5523721	5523749	.	-	.	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	start_codon	5523747	5523749	.	-	0	transcript_id "Ledus.S1G047100.t1"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	transcript	5521821	5523749	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	stop_codon	5521818	5521820	.	-	0	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5521821	5521922	0.99	-	0	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5521821	5521922	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5521923	5522000	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5522001	5522057	1	-	0	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5522001	5522057	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5522058	5522138	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5522139	5522234	1	-	0	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5522139	5522234	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5522235	5522337	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5522338	5522391	0.98	-	0	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5522338	5522391	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5522392	5522483	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5522484	5522642	1	-	0	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5522484	5522642	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5522643	5522731	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5522732	5523248	1	-	1	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5522732	5523248	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5523249	5523418	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5523419	5523544	0.91	-	1	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5523419	5523544	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	intron	5523545	5523720	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	CDS	5523721	5523749	0.42	-	0	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	exon	5523721	5523749	.	-	.	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
Ledus.S1	AUGUSTUS	start_codon	5523747	5523749	.	-	0	transcript_id "Ledus.S1G047100.t2"; gene_id "Ledus.S1G047100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8004.t1 is derived from g12675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8424915	8428519	.	-	.	Ledus.S5G078200
Ledus.S5	AUGUSTUS	transcript	8424915	8428519	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	stop_codon	8424912	8424914	.	-	0	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	CDS	8424915	8425037	1	-	0	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	exon	8424915	8425037	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	intron	8425038	8425124	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	CDS	8425125	8425443	1	-	1	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	exon	8425125	8425443	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	intron	8425444	8425538	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	CDS	8425539	8425649	1	-	1	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	exon	8425539	8425649	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	intron	8425650	8425817	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	CDS	8425818	8425885	1	-	0	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	exon	8425818	8425885	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	intron	8425886	8425979	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	CDS	8425980	8426093	1	-	0	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	exon	8425980	8426093	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	intron	8426094	8426268	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	CDS	8426269	8426363	1	-	2	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	exon	8426269	8426363	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	intron	8426364	8426443	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	CDS	8426444	8426530	0.97	-	2	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	exon	8426444	8426530	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	intron	8426531	8426645	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	CDS	8426646	8426706	0.64	-	0	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	exon	8426646	8426706	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	intron	8426707	8426931	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	CDS	8426932	8427107	0.99	-	2	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	exon	8426932	8427107	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	intron	8427108	8427250	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	CDS	8427251	8427306	0.63	-	1	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	exon	8427251	8427306	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	intron	8427307	8427404	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	CDS	8427405	8428519	0.87	-	0	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	exon	8427405	8428519	.	-	.	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
Ledus.S5	AUGUSTUS	start_codon	8428517	8428519	.	-	0	transcript_id "Ledus.S5G078200.t1"; gene_id "Ledus.S5G078200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg840.t1 is derived from g7701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5625510	5625827	.	+	.	Ledus.S2G072200
Ledus.S2	AUGUSTUS	transcript	5625510	5625827	.	+	.	transcript_id "Ledus.S2G072200.t1"; gene_id "Ledus.S2G072200"
Ledus.S2	AUGUSTUS	start_codon	5625510	5625512	.	+	0	transcript_id "Ledus.S2G072200.t1"; gene_id "Ledus.S2G072200"
Ledus.S2	AUGUSTUS	CDS	5625510	5625635	0.44	+	0	transcript_id "Ledus.S2G072200.t1"; gene_id "Ledus.S2G072200"
Ledus.S2	AUGUSTUS	exon	5625510	5625635	.	+	.	transcript_id "Ledus.S2G072200.t1"; gene_id "Ledus.S2G072200"
Ledus.S2	AUGUSTUS	intron	5625636	5625731	.	+	.	transcript_id "Ledus.S2G072200.t1"; gene_id "Ledus.S2G072200"
Ledus.S2	AUGUSTUS	CDS	5625732	5625827	1	+	0	transcript_id "Ledus.S2G072200.t1"; gene_id "Ledus.S2G072200"
Ledus.S2	AUGUSTUS	exon	5625732	5625827	.	+	.	transcript_id "Ledus.S2G072200.t1"; gene_id "Ledus.S2G072200"
Ledus.S2	AUGUSTUS	stop_codon	5625828	5625830	.	+	0	transcript_id "Ledus.S2G072200.t1"; gene_id "Ledus.S2G072200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3608.t1 is derived from g1044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10185708	10189394	.	-	.	Ledus.S1G102900
Ledus.S1	AUGUSTUS	transcript	10185708	10189394	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	stop_codon	10185705	10185707	.	-	0	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10185708	10185931	0.38	-	2	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10185708	10185931	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	intron	10185932	10186015	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10186016	10186103	0.34	-	0	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10186016	10186103	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	intron	10186104	10186499	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10186500	10186858	0.48	-	2	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10186500	10186858	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	intron	10186859	10186947	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10186948	10187041	1	-	0	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10186948	10187041	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	intron	10187042	10187133	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10187134	10187236	0.99	-	1	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10187134	10187236	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	intron	10187237	10187351	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10187352	10187429	0.99	-	1	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10187352	10187429	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	intron	10187430	10187512	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10187513	10187694	1	-	0	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10187513	10187694	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	intron	10187695	10187796	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10187797	10187899	0.98	-	1	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10187797	10187899	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	intron	10187900	10188095	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10188096	10188283	1	-	0	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10188096	10188283	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	intron	10188284	10188380	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10188381	10188416	1	-	0	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10188381	10188416	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	intron	10188417	10188552	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10188553	10188649	1	-	1	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10188553	10188649	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	intron	10188650	10188739	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10188740	10188856	1	-	1	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10188740	10188856	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	intron	10188857	10189056	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	CDS	10189057	10189394	0.74	-	0	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	exon	10189057	10189394	.	-	.	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
Ledus.S1	AUGUSTUS	start_codon	10189392	10189394	.	-	0	transcript_id "Ledus.S1G102900.t1"; gene_id "Ledus.S1G102900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg596.t1 is derived from g7457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3551151	3555443	.	-	.	Ledus.S2G047800
Ledus.S2	AUGUSTUS	transcript	3551151	3555443	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	stop_codon	3551148	3551150	.	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3551151	3551258	1	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3551151	3551258	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3551259	3551346	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3551347	3551408	1	-	2	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3551347	3551408	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3551409	3551497	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3551498	3551561	0.76	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3551498	3551561	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3551562	3551666	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3551667	3551720	0.75	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3551667	3551720	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3551721	3551827	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3551828	3551968	0.99	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3551828	3551968	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3551969	3552104	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3552105	3552209	1	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3552105	3552209	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3552210	3552308	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3552309	3552449	0.74	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3552309	3552449	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3552450	3552550	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3552551	3552657	0.49	-	2	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3552551	3552657	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3552658	3552762	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3552763	3552862	0.74	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3552763	3552862	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3552863	3552966	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3552967	3552996	0.97	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3552967	3552996	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3552997	3553128	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3553129	3553245	1	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3553129	3553245	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3553246	3553484	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3553485	3553608	1	-	1	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3553485	3553608	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3553609	3553847	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3553848	3553894	1	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3553848	3553894	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3553895	3553994	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3553995	3554123	1	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3553995	3554123	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3554124	3554225	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3554226	3554301	1	-	1	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3554226	3554301	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3554302	3554438	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3554439	3554536	1	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3554439	3554536	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3554537	3554702	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3554703	3554750	1	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3554703	3554750	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3554751	3555212	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3555213	3555443	0.96	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3555213	3555443	.	-	.	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	start_codon	3555441	3555443	.	-	0	transcript_id "Ledus.S2G047800.t1"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	transcript	3551151	3555443	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	stop_codon	3551148	3551150	.	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3551151	3551258	1	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3551151	3551258	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3551259	3551346	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3551347	3551408	1	-	2	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3551347	3551408	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3551409	3551497	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3551498	3551561	0.81	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3551498	3551561	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3551562	3551666	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3551667	3551720	0.82	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3551667	3551720	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3551721	3551827	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3551828	3551968	1	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3551828	3551968	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3551969	3552104	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3552105	3552209	1	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3552105	3552209	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3552210	3552308	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3552309	3552449	0.8	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3552309	3552449	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3552450	3552550	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3552551	3552657	0.58	-	2	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3552551	3552657	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3552658	3552762	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3552763	3552862	0.77	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3552763	3552862	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3552863	3552966	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3552967	3552996	0.96	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3552967	3552996	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3552997	3553128	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3553129	3553245	1	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3553129	3553245	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3553246	3553484	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3553485	3553608	1	-	1	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3553485	3553608	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3553609	3553847	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3553848	3553894	1	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3553848	3553894	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3553895	3553994	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3553995	3554123	1	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3553995	3554123	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3554124	3554225	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3554226	3554301	1	-	1	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3554226	3554301	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3554302	3554438	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3554439	3554536	1	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3554439	3554536	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3554537	3554702	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3554703	3554750	1	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3554703	3554750	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3554751	3554844	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3554845	3554860	0.51	-	1	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3554845	3554860	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	intron	3554861	3555141	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	CDS	3555142	3555443	0.51	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	exon	3555142	3555443	.	-	.	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
Ledus.S2	AUGUSTUS	start_codon	3555441	3555443	.	-	0	transcript_id "Ledus.S2G047800.t2"; gene_id "Ledus.S2G047800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8968.t1 is derived from g9998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3573908	3578639	.	-	.	Ledus.S3G044500
Ledus.S3	AUGUSTUS	transcript	3573908	3578639	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	stop_codon	3573905	3573907	.	-	0	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	CDS	3573908	3574485	0.99	-	2	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	exon	3573908	3574485	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	intron	3574486	3574771	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	CDS	3574772	3574973	1	-	0	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	exon	3574772	3574973	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	intron	3574974	3575152	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	CDS	3575153	3575233	1	-	0	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	exon	3575153	3575233	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	intron	3575234	3575308	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	CDS	3575309	3575728	1	-	0	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	exon	3575309	3575728	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	intron	3575729	3575828	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	CDS	3575829	3576053	1	-	0	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	exon	3575829	3576053	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	intron	3576054	3576169	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	CDS	3576170	3576331	1	-	0	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	exon	3576170	3576331	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	intron	3576332	3576445	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	CDS	3576446	3576673	1	-	0	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	exon	3576446	3576673	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	intron	3576674	3576886	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	CDS	3576887	3576916	1	-	0	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	exon	3576887	3576916	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	intron	3576917	3577054	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	CDS	3577055	3577423	0.98	-	0	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	exon	3577055	3577423	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	intron	3577424	3577543	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	CDS	3577544	3577759	0.97	-	0	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	exon	3577544	3577759	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	intron	3577760	3577931	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	CDS	3577932	3578413	1	-	2	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	exon	3577932	3578413	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	intron	3578414	3578593	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	CDS	3578594	3578639	1	-	0	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	exon	3578594	3578639	.	-	.	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
Ledus.S3	AUGUSTUS	start_codon	3578637	3578639	.	-	0	transcript_id "Ledus.S3G044500.t1"; gene_id "Ledus.S3G044500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9371.t1 is derived from g10401.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6414454	6418580	.	+	.	Ledus.S3G084800
Ledus.S3	AUGUSTUS	transcript	6414454	6418580	.	+	.	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	start_codon	6414454	6414456	.	+	0	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	CDS	6414454	6415844	0.69	+	0	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	exon	6414454	6415844	.	+	.	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	intron	6415845	6416308	.	+	.	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	CDS	6416309	6416499	0.33	+	1	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	exon	6416309	6416499	.	+	.	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	intron	6416500	6416625	.	+	.	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	CDS	6416626	6417204	0.68	+	2	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	exon	6416626	6417204	.	+	.	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	intron	6417205	6417284	.	+	.	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	CDS	6417285	6418035	0.4	+	2	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	exon	6417285	6418035	.	+	.	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	intron	6418036	6418126	.	+	.	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	CDS	6418127	6418580	0.56	+	1	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	exon	6418127	6418580	.	+	.	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	stop_codon	6418581	6418583	.	+	0	transcript_id "Ledus.S3G084800.t1"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	transcript	6414454	6415845	.	+	.	transcript_id "Ledus.S3G084800.t2"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	start_codon	6414454	6414456	.	+	0	transcript_id "Ledus.S3G084800.t2"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	CDS	6414454	6415845	0.75	+	0	transcript_id "Ledus.S3G084800.t2"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	exon	6414454	6415845	.	+	.	transcript_id "Ledus.S3G084800.t2"; gene_id "Ledus.S3G084800"
Ledus.S3	AUGUSTUS	stop_codon	6415846	6415848	.	+	0	transcript_id "Ledus.S3G084800.t2"; gene_id "Ledus.S3G084800"
# This transcript jg3861.t2 is derived from g1297.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3862.t1 is derived from g1298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13222557	13224542	.	+	.	Ledus.S1G128300
Ledus.S1	AUGUSTUS	transcript	13222557	13224542	.	+	.	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	start_codon	13222557	13222559	.	+	0	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	CDS	13222557	13222820	0.95	+	0	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	exon	13222557	13222820	.	+	.	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	intron	13222821	13222997	.	+	.	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	CDS	13222998	13223342	1	+	0	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	exon	13222998	13223342	.	+	.	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	intron	13223343	13223438	.	+	.	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	CDS	13223439	13223605	1	+	0	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	exon	13223439	13223605	.	+	.	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	intron	13223606	13223884	.	+	.	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	CDS	13223885	13224542	1	+	1	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	exon	13223885	13224542	.	+	.	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
Ledus.S1	AUGUSTUS	stop_codon	13224543	13224545	.	+	0	transcript_id "Ledus.S1G128300.t1"; gene_id "Ledus.S1G128300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5302.t1 is derived from g2741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23166067	23169765	.	-	.	Ledus.S1G272300
Ledus.S1	AUGUSTUS	transcript	23166067	23169765	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	stop_codon	23166064	23166066	.	-	0	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	CDS	23166067	23166377	1	-	2	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	exon	23166067	23166377	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	intron	23166378	23166506	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	CDS	23166507	23167026	1	-	0	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	exon	23166507	23167026	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	intron	23167027	23167159	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	CDS	23167160	23167287	1	-	2	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	exon	23167160	23167287	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	intron	23167288	23167414	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	CDS	23167415	23167729	1	-	2	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	exon	23167415	23167729	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	intron	23167730	23167873	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	CDS	23167874	23167918	1	-	2	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	exon	23167874	23167918	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	intron	23167919	23168046	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	CDS	23168047	23168548	1	-	0	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	exon	23168047	23168548	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	intron	23168549	23168647	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	CDS	23168648	23168784	1	-	2	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	exon	23168648	23168784	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	intron	23168785	23168961	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	CDS	23168962	23169276	1	-	2	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	exon	23168962	23169276	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	intron	23169277	23169368	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	CDS	23169369	23169532	0.81	-	1	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	exon	23169369	23169532	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	intron	23169533	23169640	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	CDS	23169641	23169765	0.8	-	0	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	exon	23169641	23169765	.	-	.	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
Ledus.S1	AUGUSTUS	start_codon	23169763	23169765	.	-	0	transcript_id "Ledus.S1G272300.t1"; gene_id "Ledus.S1G272300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3239.t1 is derived from g674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7062988	7064483	.	+	.	Ledus.S1G066000
Ledus.S1	AUGUSTUS	transcript	7062988	7064483	.	+	.	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	start_codon	7062988	7062990	.	+	0	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	CDS	7062988	7063423	0.88	+	0	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	exon	7062988	7063423	.	+	.	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	intron	7063424	7063648	.	+	.	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	CDS	7063649	7063748	1	+	2	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	exon	7063649	7063748	.	+	.	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	intron	7063749	7063889	.	+	.	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	CDS	7063890	7064049	0.99	+	1	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	exon	7063890	7064049	.	+	.	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	intron	7064050	7064148	.	+	.	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	CDS	7064149	7064238	1	+	0	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	exon	7064149	7064238	.	+	.	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	intron	7064239	7064363	.	+	.	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	CDS	7064364	7064483	0.99	+	0	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	exon	7064364	7064483	.	+	.	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
Ledus.S1	AUGUSTUS	stop_codon	7064484	7064486	.	+	0	transcript_id "Ledus.S1G066000.t1"; gene_id "Ledus.S1G066000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1235.t1 is derived from g8096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8775039	8777127	.	+	.	Ledus.S2G111700
Ledus.S2	AUGUSTUS	transcript	8775039	8777127	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	start_codon	8775039	8775041	.	+	0	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	CDS	8775039	8775179	0.48	+	0	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	exon	8775039	8775179	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	intron	8775180	8775342	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	CDS	8775343	8775380	1	+	0	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	exon	8775343	8775380	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	intron	8775381	8775476	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	CDS	8775477	8775597	1	+	1	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	exon	8775477	8775597	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	intron	8775598	8775730	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	CDS	8775731	8775754	1	+	0	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	exon	8775731	8775754	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	intron	8775755	8775858	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	CDS	8775859	8775927	0.98	+	0	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	exon	8775859	8775927	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	intron	8775928	8776015	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	CDS	8776016	8776069	0.95	+	0	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	exon	8776016	8776069	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	intron	8776070	8776189	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	CDS	8776190	8776268	0.96	+	0	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	exon	8776190	8776268	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	intron	8776269	8776361	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	CDS	8776362	8776446	1	+	2	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	exon	8776362	8776446	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	intron	8776447	8776532	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	CDS	8776533	8777127	0.8	+	1	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	exon	8776533	8777127	.	+	.	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
Ledus.S2	AUGUSTUS	stop_codon	8777128	8777130	.	+	0	transcript_id "Ledus.S2G111700.t1"; gene_id "Ledus.S2G111700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5219.t1 is derived from g2658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22524237	22524732	.	-	.	Ledus.S1G264000
Ledus.S1	AUGUSTUS	transcript	22524237	22524732	.	-	.	transcript_id "Ledus.S1G264000.t1"; gene_id "Ledus.S1G264000"
Ledus.S1	AUGUSTUS	stop_codon	22524234	22524236	.	-	0	transcript_id "Ledus.S1G264000.t1"; gene_id "Ledus.S1G264000"
Ledus.S1	AUGUSTUS	CDS	22524237	22524525	0.78	-	1	transcript_id "Ledus.S1G264000.t1"; gene_id "Ledus.S1G264000"
Ledus.S1	AUGUSTUS	exon	22524237	22524525	.	-	.	transcript_id "Ledus.S1G264000.t1"; gene_id "Ledus.S1G264000"
Ledus.S1	AUGUSTUS	intron	22524526	22524685	.	-	.	transcript_id "Ledus.S1G264000.t1"; gene_id "Ledus.S1G264000"
Ledus.S1	AUGUSTUS	CDS	22524686	22524732	0.87	-	0	transcript_id "Ledus.S1G264000.t1"; gene_id "Ledus.S1G264000"
Ledus.S1	AUGUSTUS	exon	22524686	22524732	.	-	.	transcript_id "Ledus.S1G264000.t1"; gene_id "Ledus.S1G264000"
Ledus.S1	AUGUSTUS	start_codon	22524730	22524732	.	-	0	transcript_id "Ledus.S1G264000.t1"; gene_id "Ledus.S1G264000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10012.t1 is derived from g11042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11862172	11862633	.	-	.	Ledus.S3G148900
Ledus.S3	AUGUSTUS	transcript	11862172	11862633	.	-	.	transcript_id "Ledus.S3G148900.t1"; gene_id "Ledus.S3G148900"
Ledus.S3	AUGUSTUS	stop_codon	11862169	11862171	.	-	0	transcript_id "Ledus.S3G148900.t1"; gene_id "Ledus.S3G148900"
Ledus.S3	AUGUSTUS	CDS	11862172	11862633	0.82	-	0	transcript_id "Ledus.S3G148900.t1"; gene_id "Ledus.S3G148900"
Ledus.S3	AUGUSTUS	exon	11862172	11862633	.	-	.	transcript_id "Ledus.S3G148900.t1"; gene_id "Ledus.S3G148900"
Ledus.S3	AUGUSTUS	start_codon	11862631	11862633	.	-	0	transcript_id "Ledus.S3G148900.t1"; gene_id "Ledus.S3G148900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2939.t1 is derived from g374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4745026	4745307	.	-	.	Ledus.S1G036000
Ledus.S1	AUGUSTUS	transcript	4745026	4745307	.	-	.	transcript_id "Ledus.S1G036000.t1"; gene_id "Ledus.S1G036000"
Ledus.S1	AUGUSTUS	stop_codon	4745023	4745025	.	-	0	transcript_id "Ledus.S1G036000.t1"; gene_id "Ledus.S1G036000"
Ledus.S1	AUGUSTUS	CDS	4745026	4745307	0.86	-	0	transcript_id "Ledus.S1G036000.t1"; gene_id "Ledus.S1G036000"
Ledus.S1	AUGUSTUS	exon	4745026	4745307	.	-	.	transcript_id "Ledus.S1G036000.t1"; gene_id "Ledus.S1G036000"
Ledus.S1	AUGUSTUS	start_codon	4745305	4745307	.	-	0	transcript_id "Ledus.S1G036000.t1"; gene_id "Ledus.S1G036000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5594.t1 is derived from g3033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25308742	25309970	.	+	.	Ledus.S1G301500
Ledus.S1	AUGUSTUS	transcript	25308742	25309970	.	+	.	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	start_codon	25308742	25308744	.	+	0	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	CDS	25308742	25309051	0.63	+	0	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	exon	25308742	25309051	.	+	.	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	intron	25309052	25309132	.	+	.	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	CDS	25309133	25309181	1	+	2	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	exon	25309133	25309181	.	+	.	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	intron	25309182	25309276	.	+	.	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	CDS	25309277	25309403	0.89	+	1	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	exon	25309277	25309403	.	+	.	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	intron	25309404	25309520	.	+	.	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	CDS	25309521	25309591	1	+	0	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	exon	25309521	25309591	.	+	.	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	intron	25309592	25309680	.	+	.	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	CDS	25309681	25309753	1	+	1	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	exon	25309681	25309753	.	+	.	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	intron	25309754	25309853	.	+	.	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	CDS	25309854	25309970	1	+	0	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	exon	25309854	25309970	.	+	.	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
Ledus.S1	AUGUSTUS	stop_codon	25309971	25309973	.	+	0	transcript_id "Ledus.S1G301500.t1"; gene_id "Ledus.S1G301500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5157.t1 is derived from g2596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22010311	22011952	.	-	.	Ledus.S1G257800
Ledus.S1	AUGUSTUS	transcript	22010311	22011952	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	stop_codon	22010308	22010310	.	-	0	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	CDS	22010311	22010592	1	-	0	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	exon	22010311	22010592	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	intron	22010593	22010673	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	CDS	22010674	22010748	1	-	0	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	exon	22010674	22010748	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	intron	22010749	22010866	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	CDS	22010867	22010936	0.66	-	1	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	exon	22010867	22010936	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	intron	22010937	22011030	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	CDS	22011031	22011113	0.97	-	0	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	exon	22011031	22011113	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	intron	22011114	22011231	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	CDS	22011232	22011399	0.96	-	0	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	exon	22011232	22011399	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	intron	22011400	22011500	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	CDS	22011501	22011669	0.98	-	1	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	exon	22011501	22011669	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	intron	22011670	22011800	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	CDS	22011801	22011952	0.87	-	0	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	exon	22011801	22011952	.	-	.	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
Ledus.S1	AUGUSTUS	start_codon	22011950	22011952	.	-	0	transcript_id "Ledus.S1G257800.t1"; gene_id "Ledus.S1G257800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12716.t1 is derived from g6338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14047376	14050778	.	+	.	Ledus.S4G187200
Ledus.S4	AUGUSTUS	transcript	14047376	14050778	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	start_codon	14047376	14047378	.	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14047376	14047791	0.65	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14047376	14047791	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14047792	14047869	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14047870	14047925	1	+	1	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14047870	14047925	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14047926	14048005	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14048006	14048064	1	+	2	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14048006	14048064	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14048065	14048149	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14048150	14048221	1	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14048150	14048221	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14048222	14048330	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14048331	14048414	0.97	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14048331	14048414	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14048415	14048703	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14048704	14048811	1	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14048704	14048811	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14048812	14049040	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14049041	14049103	1	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14049041	14049103	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14049104	14049211	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14049212	14049292	1	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14049212	14049292	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14049293	14049386	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14049387	14049452	1	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14049387	14049452	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14049453	14049578	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14049579	14049734	1	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14049579	14049734	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14049735	14049820	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14049821	14049901	0.99	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14049821	14049901	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14049902	14050020	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14050021	14050059	0.77	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14050021	14050059	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14050060	14050181	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14050182	14050264	0.78	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14050182	14050264	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14050265	14050346	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14050347	14050419	1	+	1	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14050347	14050419	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	intron	14050420	14050616	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	CDS	14050617	14050778	0.96	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	exon	14050617	14050778	.	+	.	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
Ledus.S4	AUGUSTUS	stop_codon	14050779	14050781	.	+	0	transcript_id "Ledus.S4G187200.t1"; gene_id "Ledus.S4G187200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1339.t1 is derived from g8200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9327612	9330064	.	-	.	Ledus.S2G122100
Ledus.S2	AUGUSTUS	transcript	9327612	9330064	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	stop_codon	9327609	9327611	.	-	0	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9327612	9327751	0.73	-	2	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9327612	9327751	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	intron	9327752	9327841	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9327842	9327902	1	-	0	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9327842	9327902	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	intron	9327903	9327999	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9328000	9328122	1	-	0	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9328000	9328122	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	intron	9328123	9328219	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9328220	9328286	1	-	1	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9328220	9328286	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	intron	9328287	9328365	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9328366	9328436	1	-	0	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9328366	9328436	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	intron	9328437	9328512	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9328513	9328610	1	-	2	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9328513	9328610	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	intron	9328611	9328761	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9328762	9328838	1	-	1	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9328762	9328838	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	intron	9328839	9328920	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9328921	9328988	1	-	0	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9328921	9328988	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	intron	9328989	9329080	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9329081	9329214	1	-	2	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9329081	9329214	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	intron	9329215	9329281	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9329282	9329328	1	-	1	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9329282	9329328	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	intron	9329329	9329437	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9329438	9329491	1	-	1	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9329438	9329491	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	intron	9329492	9329709	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9329710	9329839	0.49	-	2	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9329710	9329839	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	intron	9329840	9330009	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	CDS	9330010	9330064	0.52	-	0	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	exon	9330010	9330064	.	-	.	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
Ledus.S2	AUGUSTUS	start_codon	9330062	9330064	.	-	0	transcript_id "Ledus.S2G122100.t1"; gene_id "Ledus.S2G122100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1817.t1 is derived from g8680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12734452	12735110	.	+	.	Ledus.S2G169900
Ledus.S2	AUGUSTUS	transcript	12734452	12735110	.	+	.	transcript_id "Ledus.S2G169900.t1"; gene_id "Ledus.S2G169900"
Ledus.S2	AUGUSTUS	start_codon	12734452	12734454	.	+	0	transcript_id "Ledus.S2G169900.t1"; gene_id "Ledus.S2G169900"
Ledus.S2	AUGUSTUS	CDS	12734452	12734565	0.25	+	0	transcript_id "Ledus.S2G169900.t1"; gene_id "Ledus.S2G169900"
Ledus.S2	AUGUSTUS	exon	12734452	12734565	.	+	.	transcript_id "Ledus.S2G169900.t1"; gene_id "Ledus.S2G169900"
Ledus.S2	AUGUSTUS	intron	12734566	12734857	.	+	.	transcript_id "Ledus.S2G169900.t1"; gene_id "Ledus.S2G169900"
Ledus.S2	AUGUSTUS	CDS	12734858	12734901	0.81	+	0	transcript_id "Ledus.S2G169900.t1"; gene_id "Ledus.S2G169900"
Ledus.S2	AUGUSTUS	exon	12734858	12734901	.	+	.	transcript_id "Ledus.S2G169900.t1"; gene_id "Ledus.S2G169900"
Ledus.S2	AUGUSTUS	intron	12734902	12735031	.	+	.	transcript_id "Ledus.S2G169900.t1"; gene_id "Ledus.S2G169900"
Ledus.S2	AUGUSTUS	CDS	12735032	12735110	0.94	+	1	transcript_id "Ledus.S2G169900.t1"; gene_id "Ledus.S2G169900"
Ledus.S2	AUGUSTUS	exon	12735032	12735110	.	+	.	transcript_id "Ledus.S2G169900.t1"; gene_id "Ledus.S2G169900"
Ledus.S2	AUGUSTUS	stop_codon	12735111	12735113	.	+	0	transcript_id "Ledus.S2G169900.t1"; gene_id "Ledus.S2G169900"
# This transcript jg8341.t2 is derived from g13013.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8342.t1 is derived from g13014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10908051	10908989	.	-	.	Ledus.S5G112000
Ledus.S5	AUGUSTUS	transcript	10908051	10908989	.	-	.	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	stop_codon	10908048	10908050	.	-	0	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	CDS	10908051	10908129	1	-	1	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	exon	10908051	10908129	.	-	.	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	intron	10908130	10908229	.	-	.	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	CDS	10908230	10908402	1	-	0	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	exon	10908230	10908402	.	-	.	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	intron	10908403	10908488	.	-	.	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	CDS	10908489	10908819	1	-	1	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	exon	10908489	10908819	.	-	.	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	intron	10908820	10908912	.	-	.	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	CDS	10908913	10908989	1	-	0	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	exon	10908913	10908989	.	-	.	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	start_codon	10908987	10908989	.	-	0	transcript_id "Ledus.S5G112000.t1"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	transcript	10908051	10908989	.	-	.	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	stop_codon	10908048	10908050	.	-	0	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	CDS	10908051	10908129	1	-	1	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	exon	10908051	10908129	.	-	.	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	intron	10908130	10908229	.	-	.	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	CDS	10908230	10908399	1	-	0	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	exon	10908230	10908399	.	-	.	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	intron	10908400	10908488	.	-	.	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	CDS	10908489	10908819	1	-	1	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	exon	10908489	10908819	.	-	.	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	intron	10908820	10908912	.	-	.	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	CDS	10908913	10908989	0.99	-	0	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	exon	10908913	10908989	.	-	.	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
Ledus.S5	AUGUSTUS	start_codon	10908987	10908989	.	-	0	transcript_id "Ledus.S5G112000.t2"; gene_id "Ledus.S5G112000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9005.t1 is derived from g10035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3826091	3826742	.	-	.	Ledus.S3G048200
Ledus.S3	AUGUSTUS	transcript	3826091	3826742	.	-	.	transcript_id "Ledus.S3G048200.t1"; gene_id "Ledus.S3G048200"
Ledus.S3	AUGUSTUS	stop_codon	3826088	3826090	.	-	0	transcript_id "Ledus.S3G048200.t1"; gene_id "Ledus.S3G048200"
Ledus.S3	AUGUSTUS	CDS	3826091	3826549	0.37	-	0	transcript_id "Ledus.S3G048200.t1"; gene_id "Ledus.S3G048200"
Ledus.S3	AUGUSTUS	exon	3826091	3826549	.	-	.	transcript_id "Ledus.S3G048200.t1"; gene_id "Ledus.S3G048200"
Ledus.S3	AUGUSTUS	intron	3826550	3826646	.	-	.	transcript_id "Ledus.S3G048200.t1"; gene_id "Ledus.S3G048200"
Ledus.S3	AUGUSTUS	CDS	3826647	3826742	0.6	-	0	transcript_id "Ledus.S3G048200.t1"; gene_id "Ledus.S3G048200"
Ledus.S3	AUGUSTUS	exon	3826647	3826742	.	-	.	transcript_id "Ledus.S3G048200.t1"; gene_id "Ledus.S3G048200"
Ledus.S3	AUGUSTUS	start_codon	3826740	3826742	.	-	0	transcript_id "Ledus.S3G048200.t1"; gene_id "Ledus.S3G048200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3633.t1 is derived from g1069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10314256	10316559	.	+	.	Ledus.S1G105400
Ledus.S1	AUGUSTUS	transcript	10314256	10316559	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	start_codon	10314256	10314258	.	+	0	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	CDS	10314256	10314267	0.95	+	0	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	exon	10314256	10314267	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	intron	10314268	10314484	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	CDS	10314485	10314561	0.97	+	0	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	exon	10314485	10314561	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	intron	10314562	10314677	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	CDS	10314678	10315295	0.76	+	1	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	exon	10314678	10315295	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	intron	10315296	10315408	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	CDS	10315409	10315584	0.77	+	1	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	exon	10315409	10315584	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	intron	10315585	10315683	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	CDS	10315684	10316165	0.28	+	2	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	exon	10315684	10316165	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	intron	10316166	10316363	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	CDS	10316364	10316411	0.33	+	0	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	exon	10316364	10316411	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	intron	10316412	10316553	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	CDS	10316554	10316559	0.34	+	0	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	exon	10316554	10316559	.	+	.	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
Ledus.S1	AUGUSTUS	stop_codon	10316560	10316562	.	+	0	transcript_id "Ledus.S1G105400.t1"; gene_id "Ledus.S1G105400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7235.t1 is derived from g11906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	184089	186599	.	+	.	Ledus.S5G001300
Ledus.S5	AUGUSTUS	transcript	184089	186599	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	start_codon	184089	184091	.	+	0	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	CDS	184089	184370	0.56	+	0	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	exon	184089	184370	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	intron	184371	184483	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	CDS	184484	184634	1	+	0	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	exon	184484	184634	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	intron	184635	184807	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	CDS	184808	184899	0.79	+	2	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	exon	184808	184899	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	intron	184900	185003	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	CDS	185004	185117	0.8	+	0	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	exon	185004	185117	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	intron	185118	185294	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	CDS	185295	185362	1	+	0	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	exon	185295	185362	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	intron	185363	185481	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	CDS	185482	185530	0.91	+	1	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	exon	185482	185530	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	intron	185531	185810	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	CDS	185811	185903	0.93	+	0	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	exon	185811	185903	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	intron	185904	186197	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	CDS	186198	186244	0.96	+	0	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	exon	186198	186244	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	intron	186245	186338	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	CDS	186339	186406	1	+	1	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	exon	186339	186406	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	intron	186407	186561	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	CDS	186562	186599	1	+	2	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	exon	186562	186599	.	+	.	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
Ledus.S5	AUGUSTUS	stop_codon	186600	186602	.	+	0	transcript_id "Ledus.S5G001300.t1"; gene_id "Ledus.S5G001300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7032.t1 is derived from g6563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	941016	941929	.	-	.	Ledus.C7G009300
Ledus.C7	AUGUSTUS	transcript	941016	941929	.	-	.	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	stop_codon	941013	941015	.	-	0	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	CDS	941016	941141	0.32	-	0	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	exon	941016	941141	.	-	.	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	intron	941142	941224	.	-	.	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	CDS	941225	941334	0.74	-	2	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	exon	941225	941334	.	-	.	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	intron	941335	941484	.	-	.	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	CDS	941485	941523	0.79	-	2	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	exon	941485	941523	.	-	.	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	intron	941524	941685	.	-	.	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	CDS	941686	941929	0.52	-	0	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	exon	941686	941929	.	-	.	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
Ledus.C7	AUGUSTUS	start_codon	941927	941929	.	-	0	transcript_id "Ledus.C7G009300.t1"; gene_id "Ledus.C7G009300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2225.t1 is derived from g9088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16160572	16161119	.	+	.	Ledus.S2G210700
Ledus.S2	AUGUSTUS	transcript	16160572	16161119	.	+	.	transcript_id "Ledus.S2G210700.t1"; gene_id "Ledus.S2G210700"
Ledus.S2	AUGUSTUS	start_codon	16160572	16160574	.	+	0	transcript_id "Ledus.S2G210700.t1"; gene_id "Ledus.S2G210700"
Ledus.S2	AUGUSTUS	CDS	16160572	16160825	0.69	+	0	transcript_id "Ledus.S2G210700.t1"; gene_id "Ledus.S2G210700"
Ledus.S2	AUGUSTUS	exon	16160572	16160825	.	+	.	transcript_id "Ledus.S2G210700.t1"; gene_id "Ledus.S2G210700"
Ledus.S2	AUGUSTUS	intron	16160826	16160983	.	+	.	transcript_id "Ledus.S2G210700.t1"; gene_id "Ledus.S2G210700"
Ledus.S2	AUGUSTUS	CDS	16160984	16161119	0.66	+	1	transcript_id "Ledus.S2G210700.t1"; gene_id "Ledus.S2G210700"
Ledus.S2	AUGUSTUS	exon	16160984	16161119	.	+	.	transcript_id "Ledus.S2G210700.t1"; gene_id "Ledus.S2G210700"
Ledus.S2	AUGUSTUS	stop_codon	16161120	16161122	.	+	0	transcript_id "Ledus.S2G210700.t1"; gene_id "Ledus.S2G210700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13083.t1 is derived from g6893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5252294	5253582	.	+	.	Ledus.S6G014500
Ledus.S6	AUGUSTUS	transcript	5252294	5253582	.	+	.	transcript_id "Ledus.S6G014500.t1"; gene_id "Ledus.S6G014500"
Ledus.S6	AUGUSTUS	start_codon	5252294	5252296	.	+	0	transcript_id "Ledus.S6G014500.t1"; gene_id "Ledus.S6G014500"
Ledus.S6	AUGUSTUS	CDS	5252294	5253066	0.26	+	0	transcript_id "Ledus.S6G014500.t1"; gene_id "Ledus.S6G014500"
Ledus.S6	AUGUSTUS	exon	5252294	5253066	.	+	.	transcript_id "Ledus.S6G014500.t1"; gene_id "Ledus.S6G014500"
Ledus.S6	AUGUSTUS	intron	5253067	5253156	.	+	.	transcript_id "Ledus.S6G014500.t1"; gene_id "Ledus.S6G014500"
Ledus.S6	AUGUSTUS	CDS	5253157	5253454	0.43	+	1	transcript_id "Ledus.S6G014500.t1"; gene_id "Ledus.S6G014500"
Ledus.S6	AUGUSTUS	exon	5253157	5253454	.	+	.	transcript_id "Ledus.S6G014500.t1"; gene_id "Ledus.S6G014500"
Ledus.S6	AUGUSTUS	intron	5253455	5253564	.	+	.	transcript_id "Ledus.S6G014500.t1"; gene_id "Ledus.S6G014500"
Ledus.S6	AUGUSTUS	CDS	5253565	5253582	0.85	+	0	transcript_id "Ledus.S6G014500.t1"; gene_id "Ledus.S6G014500"
Ledus.S6	AUGUSTUS	exon	5253565	5253582	.	+	.	transcript_id "Ledus.S6G014500.t1"; gene_id "Ledus.S6G014500"
Ledus.S6	AUGUSTUS	stop_codon	5253583	5253585	.	+	0	transcript_id "Ledus.S6G014500.t1"; gene_id "Ledus.S6G014500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6977.t1 is derived from g6508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	511292	512425	.	-	.	Ledus.C7G003800
Ledus.C7	AUGUSTUS	transcript	511292	512425	.	-	.	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	stop_codon	511289	511291	.	-	0	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	CDS	511292	511447	0.93	-	0	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	exon	511292	511447	.	-	.	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	intron	511448	511534	.	-	.	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	CDS	511535	511906	0.53	-	0	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	exon	511535	511906	.	-	.	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	intron	511907	512001	.	-	.	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	CDS	512002	512103	0.38	-	0	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	exon	512002	512103	.	-	.	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	intron	512104	512230	.	-	.	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	CDS	512231	512425	0.22	-	0	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	exon	512231	512425	.	-	.	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
Ledus.C7	AUGUSTUS	start_codon	512423	512425	.	-	0	transcript_id "Ledus.C7G003800.t1"; gene_id "Ledus.C7G003800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3164.t1 is derived from g599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6465230	6469633	.	-	.	Ledus.S1G058500
Ledus.S1	AUGUSTUS	transcript	6465230	6469633	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	stop_codon	6465227	6465229	.	-	0	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6465230	6465373	0.93	-	0	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6465230	6465373	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6465374	6465481	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6465482	6465721	0.78	-	0	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6465482	6465721	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6465722	6465828	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6465829	6466100	0.83	-	2	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6465829	6466100	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6466101	6466259	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6466260	6466338	0.81	-	0	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6466260	6466338	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6466339	6466451	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6466452	6466529	1	-	0	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6466452	6466529	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6466530	6466652	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6466653	6466712	1	-	0	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6466653	6466712	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6466713	6466883	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6466884	6466964	1	-	0	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6466884	6466964	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6466965	6467132	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6467133	6467318	1	-	0	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6467133	6467318	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6467319	6467446	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6467447	6467520	1	-	2	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6467447	6467520	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6467521	6467717	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6467718	6467830	1	-	1	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6467718	6467830	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6467831	6468471	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6468472	6468671	0.64	-	0	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6468472	6468671	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6468672	6469010	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6469011	6469173	0.56	-	1	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6469011	6469173	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6469174	6469463	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6469464	6469633	0.5	-	0	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6469464	6469633	.	-	.	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	start_codon	6469631	6469633	.	-	0	transcript_id "Ledus.S1G058500.t1"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	transcript	6465230	6469633	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	stop_codon	6465227	6465229	.	-	0	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6465230	6465373	0.91	-	0	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6465230	6465373	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6465374	6465481	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6465482	6465721	0.71	-	0	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6465482	6465721	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6465722	6465828	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6465829	6466100	0.71	-	2	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6465829	6466100	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6466101	6466259	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6466260	6466338	0.76	-	0	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6466260	6466338	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6466339	6466451	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6466452	6466529	1	-	0	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6466452	6466529	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6466530	6466652	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6466653	6466712	1	-	0	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6466653	6466712	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6466713	6466883	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6466884	6466964	1	-	0	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6466884	6466964	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6466965	6467120	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6467121	6467318	1	-	0	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6467121	6467318	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6467319	6467446	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6467447	6467520	1	-	2	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6467447	6467520	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6467521	6467717	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6467718	6467830	1	-	1	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6467718	6467830	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6467831	6468471	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6468472	6468671	0.69	-	0	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6468472	6468671	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6468672	6469010	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6469011	6469173	0.61	-	1	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6469011	6469173	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	intron	6469174	6469463	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	CDS	6469464	6469633	0.44	-	0	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	exon	6469464	6469633	.	-	.	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
Ledus.S1	AUGUSTUS	start_codon	6469631	6469633	.	-	0	transcript_id "Ledus.S1G058500.t2"; gene_id "Ledus.S1G058500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9209.t1 is derived from g10239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5421393	5422432	.	-	.	Ledus.S3G068600
Ledus.S3	AUGUSTUS	transcript	5421393	5422432	.	-	.	transcript_id "Ledus.S3G068600.t1"; gene_id "Ledus.S3G068600"
Ledus.S3	AUGUSTUS	stop_codon	5421390	5421392	.	-	0	transcript_id "Ledus.S3G068600.t1"; gene_id "Ledus.S3G068600"
Ledus.S3	AUGUSTUS	CDS	5421393	5421650	0.99	-	0	transcript_id "Ledus.S3G068600.t1"; gene_id "Ledus.S3G068600"
Ledus.S3	AUGUSTUS	exon	5421393	5421650	.	-	.	transcript_id "Ledus.S3G068600.t1"; gene_id "Ledus.S3G068600"
Ledus.S3	AUGUSTUS	intron	5421651	5421759	.	-	.	transcript_id "Ledus.S3G068600.t1"; gene_id "Ledus.S3G068600"
Ledus.S3	AUGUSTUS	CDS	5421760	5421882	0.99	-	0	transcript_id "Ledus.S3G068600.t1"; gene_id "Ledus.S3G068600"
Ledus.S3	AUGUSTUS	exon	5421760	5421882	.	-	.	transcript_id "Ledus.S3G068600.t1"; gene_id "Ledus.S3G068600"
Ledus.S3	AUGUSTUS	intron	5421883	5421961	.	-	.	transcript_id "Ledus.S3G068600.t1"; gene_id "Ledus.S3G068600"
Ledus.S3	AUGUSTUS	CDS	5421962	5422432	0.76	-	0	transcript_id "Ledus.S3G068600.t1"; gene_id "Ledus.S3G068600"
Ledus.S3	AUGUSTUS	exon	5421962	5422432	.	-	.	transcript_id "Ledus.S3G068600.t1"; gene_id "Ledus.S3G068600"
Ledus.S3	AUGUSTUS	start_codon	5422430	5422432	.	-	0	transcript_id "Ledus.S3G068600.t1"; gene_id "Ledus.S3G068600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg409.t1 is derived from g7270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2257560	2259503	.	-	.	Ledus.S2G029100
Ledus.S2	AUGUSTUS	transcript	2257560	2259503	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	stop_codon	2257557	2257559	.	-	0	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	CDS	2257560	2257569	1	-	1	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	exon	2257560	2257569	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	intron	2257570	2257779	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	CDS	2257780	2257852	1	-	2	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	exon	2257780	2257852	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	intron	2257853	2257986	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	CDS	2257987	2258172	0.73	-	2	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	exon	2257987	2258172	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	intron	2258173	2258793	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	CDS	2258794	2258900	0.74	-	1	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	exon	2258794	2258900	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	intron	2258901	2258987	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	CDS	2258988	2259057	0.97	-	2	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	exon	2258988	2259057	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	intron	2259058	2259162	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	CDS	2259163	2259230	0.97	-	1	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	exon	2259163	2259230	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	intron	2259231	2259351	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	CDS	2259352	2259410	1	-	0	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	exon	2259352	2259410	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	intron	2259411	2259500	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	CDS	2259501	2259503	0.9	-	0	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	exon	2259501	2259503	.	-	.	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
Ledus.S2	AUGUSTUS	start_codon	2259501	2259503	.	-	0	transcript_id "Ledus.S2G029100.t1"; gene_id "Ledus.S2G029100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10537.t1 is derived from g11567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16011615	16012598	.	-	.	Ledus.S3G201400
Ledus.S3	AUGUSTUS	transcript	16011615	16012598	.	-	.	transcript_id "Ledus.S3G201400.t1"; gene_id "Ledus.S3G201400"
Ledus.S3	AUGUSTUS	stop_codon	16011612	16011614	.	-	0	transcript_id "Ledus.S3G201400.t1"; gene_id "Ledus.S3G201400"
Ledus.S3	AUGUSTUS	CDS	16011615	16012598	1	-	0	transcript_id "Ledus.S3G201400.t1"; gene_id "Ledus.S3G201400"
Ledus.S3	AUGUSTUS	exon	16011615	16012598	.	-	.	transcript_id "Ledus.S3G201400.t1"; gene_id "Ledus.S3G201400"
Ledus.S3	AUGUSTUS	start_codon	16012596	16012598	.	-	0	transcript_id "Ledus.S3G201400.t1"; gene_id "Ledus.S3G201400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2983.t1 is derived from g418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5146643	5146927	.	+	.	Ledus.S1G040400
Ledus.S1	AUGUSTUS	transcript	5146643	5146927	.	+	.	transcript_id "Ledus.S1G040400.t1"; gene_id "Ledus.S1G040400"
Ledus.S1	AUGUSTUS	start_codon	5146643	5146645	.	+	0	transcript_id "Ledus.S1G040400.t1"; gene_id "Ledus.S1G040400"
Ledus.S1	AUGUSTUS	CDS	5146643	5146927	0.41	+	0	transcript_id "Ledus.S1G040400.t1"; gene_id "Ledus.S1G040400"
Ledus.S1	AUGUSTUS	exon	5146643	5146927	.	+	.	transcript_id "Ledus.S1G040400.t1"; gene_id "Ledus.S1G040400"
Ledus.S1	AUGUSTUS	stop_codon	5146928	5146930	.	+	0	transcript_id "Ledus.S1G040400.t1"; gene_id "Ledus.S1G040400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5002.t1 is derived from g2440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21095303	21095889	.	+	.	Ledus.S1G242300
Ledus.S1	AUGUSTUS	transcript	21095303	21095889	.	+	.	transcript_id "Ledus.S1G242300.t1"; gene_id "Ledus.S1G242300"
Ledus.S1	AUGUSTUS	start_codon	21095303	21095305	.	+	0	transcript_id "Ledus.S1G242300.t1"; gene_id "Ledus.S1G242300"
Ledus.S1	AUGUSTUS	CDS	21095303	21095354	1	+	0	transcript_id "Ledus.S1G242300.t1"; gene_id "Ledus.S1G242300"
Ledus.S1	AUGUSTUS	exon	21095303	21095354	.	+	.	transcript_id "Ledus.S1G242300.t1"; gene_id "Ledus.S1G242300"
Ledus.S1	AUGUSTUS	intron	21095355	21095671	.	+	.	transcript_id "Ledus.S1G242300.t1"; gene_id "Ledus.S1G242300"
Ledus.S1	AUGUSTUS	CDS	21095672	21095889	0.87	+	2	transcript_id "Ledus.S1G242300.t1"; gene_id "Ledus.S1G242300"
Ledus.S1	AUGUSTUS	exon	21095672	21095889	.	+	.	transcript_id "Ledus.S1G242300.t1"; gene_id "Ledus.S1G242300"
Ledus.S1	AUGUSTUS	stop_codon	21095890	21095892	.	+	0	transcript_id "Ledus.S1G242300.t1"; gene_id "Ledus.S1G242300"
# This transcript jg5839.t2 is derived from g3281.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5840.t1 is derived from g3282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27250907	27252818	.	-	.	Ledus.S1G326100
Ledus.S1	AUGUSTUS	transcript	27250907	27252818	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	stop_codon	27250904	27250906	.	-	0	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	CDS	27250907	27250952	0.85	-	1	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	exon	27250907	27250952	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	intron	27250953	27251059	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	CDS	27251060	27251106	0.85	-	0	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	exon	27251060	27251106	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	intron	27251107	27251215	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	CDS	27251216	27251275	1	-	0	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	exon	27251216	27251275	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	intron	27251276	27251346	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	CDS	27251347	27251406	1	-	0	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	exon	27251347	27251406	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	intron	27251407	27251506	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	CDS	27251507	27251562	1	-	2	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	exon	27251507	27251562	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	intron	27251563	27251651	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	CDS	27251652	27251685	1	-	0	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	exon	27251652	27251685	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	intron	27251686	27251761	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	CDS	27251762	27251836	1	-	0	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	exon	27251762	27251836	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	intron	27251837	27251905	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	CDS	27251906	27251956	1	-	0	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	exon	27251906	27251956	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	intron	27251957	27252077	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	CDS	27252078	27252122	1	-	0	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	exon	27252078	27252122	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	intron	27252123	27252207	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	CDS	27252208	27252301	1	-	1	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	exon	27252208	27252301	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	intron	27252302	27252411	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	CDS	27252412	27252818	0.81	-	0	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	exon	27252412	27252818	.	-	.	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
Ledus.S1	AUGUSTUS	start_codon	27252816	27252818	.	-	0	transcript_id "Ledus.S1G326100.t1"; gene_id "Ledus.S1G326100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12998.t1 is derived from g6808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2162353	2165698	.	+	.	Ledus.S6G006000
Ledus.S6	AUGUSTUS	transcript	2162353	2165698	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	start_codon	2162353	2162355	.	+	0	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	CDS	2162353	2162601	0.98	+	0	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	exon	2162353	2162601	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	intron	2162602	2163131	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	CDS	2163132	2163428	0.9	+	0	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	exon	2163132	2163428	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	intron	2163429	2163533	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	CDS	2163534	2163803	0.92	+	0	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	exon	2163534	2163803	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	intron	2163804	2164129	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	CDS	2164130	2164309	1	+	0	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	exon	2164130	2164309	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	intron	2164310	2164458	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	CDS	2164459	2164562	1	+	0	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	exon	2164459	2164562	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	intron	2164563	2164740	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	CDS	2164741	2164852	1	+	1	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	exon	2164741	2164852	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	intron	2164853	2165034	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	CDS	2165035	2165133	1	+	0	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	exon	2165035	2165133	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	intron	2165134	2165387	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	CDS	2165388	2165507	1	+	0	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	exon	2165388	2165507	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	intron	2165508	2165584	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	CDS	2165585	2165698	1	+	0	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	exon	2165585	2165698	.	+	.	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
Ledus.S6	AUGUSTUS	stop_codon	2165699	2165701	.	+	0	transcript_id "Ledus.S6G006000.t1"; gene_id "Ledus.S6G006000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12493.t1 is derived from g6114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12376451	12377241	.	-	.	Ledus.S4G164900
Ledus.S4	AUGUSTUS	transcript	12376451	12377241	.	-	.	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	stop_codon	12376448	12376450	.	-	0	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	CDS	12376451	12376451	0.91	-	1	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	exon	12376451	12376451	.	-	.	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	intron	12376452	12376610	.	-	.	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	CDS	12376611	12376814	0.89	-	1	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	exon	12376611	12376814	.	-	.	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	intron	12376815	12376937	.	-	.	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	CDS	12376938	12376993	0.81	-	0	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	exon	12376938	12376993	.	-	.	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	intron	12376994	12377061	.	-	.	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	CDS	12377062	12377241	0.47	-	0	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	exon	12377062	12377241	.	-	.	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
Ledus.S4	AUGUSTUS	start_codon	12377239	12377241	.	-	0	transcript_id "Ledus.S4G164900.t1"; gene_id "Ledus.S4G164900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8393.t1 is derived from g13065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11459288	11463620	.	-	.	Ledus.S5G117100
Ledus.S5	AUGUSTUS	transcript	11459288	11463620	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	stop_codon	11459285	11459287	.	-	0	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	CDS	11459288	11459564	1	-	1	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	exon	11459288	11459564	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	intron	11459565	11459647	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	CDS	11459648	11459874	1	-	0	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	exon	11459648	11459874	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	intron	11459875	11459961	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	CDS	11459962	11460126	1	-	0	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	exon	11459962	11460126	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	intron	11460127	11460225	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	CDS	11460226	11460463	0.97	-	1	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	exon	11460226	11460463	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	intron	11460464	11460644	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	CDS	11460645	11461333	1	-	0	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	exon	11460645	11461333	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	intron	11461334	11462030	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	CDS	11462031	11462324	1	-	0	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	exon	11462031	11462324	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	intron	11462325	11462410	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	CDS	11462411	11462556	1	-	2	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	exon	11462411	11462556	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	intron	11462557	11462640	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	CDS	11462641	11462953	0.99	-	0	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	exon	11462641	11462953	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	intron	11462954	11463071	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	CDS	11463072	11463620	0.96	-	0	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	exon	11463072	11463620	.	-	.	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
Ledus.S5	AUGUSTUS	start_codon	11463618	11463620	.	-	0	transcript_id "Ledus.S5G117100.t1"; gene_id "Ledus.S5G117100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12772.t1 is derived from g6394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14424823	14426692	.	-	.	Ledus.S4G192800
Ledus.S4	AUGUSTUS	transcript	14424823	14426692	.	-	.	transcript_id "Ledus.S4G192800.t1"; gene_id "Ledus.S4G192800"
Ledus.S4	AUGUSTUS	stop_codon	14424820	14424822	.	-	0	transcript_id "Ledus.S4G192800.t1"; gene_id "Ledus.S4G192800"
Ledus.S4	AUGUSTUS	CDS	14424823	14426112	0.99	-	0	transcript_id "Ledus.S4G192800.t1"; gene_id "Ledus.S4G192800"
Ledus.S4	AUGUSTUS	exon	14424823	14426112	.	-	.	transcript_id "Ledus.S4G192800.t1"; gene_id "Ledus.S4G192800"
Ledus.S4	AUGUSTUS	intron	14426113	14426209	.	-	.	transcript_id "Ledus.S4G192800.t1"; gene_id "Ledus.S4G192800"
Ledus.S4	AUGUSTUS	CDS	14426210	14426692	0.92	-	0	transcript_id "Ledus.S4G192800.t1"; gene_id "Ledus.S4G192800"
Ledus.S4	AUGUSTUS	exon	14426210	14426692	.	-	.	transcript_id "Ledus.S4G192800.t1"; gene_id "Ledus.S4G192800"
Ledus.S4	AUGUSTUS	start_codon	14426690	14426692	.	-	0	transcript_id "Ledus.S4G192800.t1"; gene_id "Ledus.S4G192800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg453.t1 is derived from g7314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2667287	2668430	.	+	.	Ledus.S2G033500
Ledus.S2	AUGUSTUS	transcript	2667287	2668430	.	+	.	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	start_codon	2667287	2667289	.	+	0	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	CDS	2667287	2667518	1	+	0	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	exon	2667287	2667518	.	+	.	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	intron	2667519	2667631	.	+	.	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	CDS	2667632	2667804	1	+	2	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	exon	2667632	2667804	.	+	.	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	intron	2667805	2667955	.	+	.	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	CDS	2667956	2668019	1	+	0	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	exon	2667956	2668019	.	+	.	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	intron	2668020	2668109	.	+	.	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	CDS	2668110	2668265	0.99	+	2	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	exon	2668110	2668265	.	+	.	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	intron	2668266	2668353	.	+	.	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	CDS	2668354	2668430	1	+	2	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	exon	2668354	2668430	.	+	.	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
Ledus.S2	AUGUSTUS	stop_codon	2668431	2668433	.	+	0	transcript_id "Ledus.S2G033500.t1"; gene_id "Ledus.S2G033500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9397.t1 is derived from g10427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6528232	6528768	.	+	.	Ledus.S3G087400
Ledus.S3	AUGUSTUS	transcript	6528232	6528768	.	+	.	transcript_id "Ledus.S3G087400.t1"; gene_id "Ledus.S3G087400"
Ledus.S3	AUGUSTUS	start_codon	6528232	6528234	.	+	0	transcript_id "Ledus.S3G087400.t1"; gene_id "Ledus.S3G087400"
Ledus.S3	AUGUSTUS	CDS	6528232	6528768	0.73	+	0	transcript_id "Ledus.S3G087400.t1"; gene_id "Ledus.S3G087400"
Ledus.S3	AUGUSTUS	exon	6528232	6528768	.	+	.	transcript_id "Ledus.S3G087400.t1"; gene_id "Ledus.S3G087400"
Ledus.S3	AUGUSTUS	stop_codon	6528769	6528771	.	+	0	transcript_id "Ledus.S3G087400.t1"; gene_id "Ledus.S3G087400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8277.t1 is derived from g12948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10363864	10364473	.	-	.	Ledus.S5G105500
Ledus.S5	AUGUSTUS	transcript	10363864	10364473	.	-	.	transcript_id "Ledus.S5G105500.t1"; gene_id "Ledus.S5G105500"
Ledus.S5	AUGUSTUS	stop_codon	10363861	10363863	.	-	0	transcript_id "Ledus.S5G105500.t1"; gene_id "Ledus.S5G105500"
Ledus.S5	AUGUSTUS	CDS	10363864	10364015	0.38	-	2	transcript_id "Ledus.S5G105500.t1"; gene_id "Ledus.S5G105500"
Ledus.S5	AUGUSTUS	exon	10363864	10364015	.	-	.	transcript_id "Ledus.S5G105500.t1"; gene_id "Ledus.S5G105500"
Ledus.S5	AUGUSTUS	intron	10364016	10364217	.	-	.	transcript_id "Ledus.S5G105500.t1"; gene_id "Ledus.S5G105500"
Ledus.S5	AUGUSTUS	CDS	10364218	10364314	0.66	-	0	transcript_id "Ledus.S5G105500.t1"; gene_id "Ledus.S5G105500"
Ledus.S5	AUGUSTUS	exon	10364218	10364314	.	-	.	transcript_id "Ledus.S5G105500.t1"; gene_id "Ledus.S5G105500"
Ledus.S5	AUGUSTUS	intron	10364315	10364410	.	-	.	transcript_id "Ledus.S5G105500.t1"; gene_id "Ledus.S5G105500"
Ledus.S5	AUGUSTUS	CDS	10364411	10364473	0.57	-	0	transcript_id "Ledus.S5G105500.t1"; gene_id "Ledus.S5G105500"
Ledus.S5	AUGUSTUS	exon	10364411	10364473	.	-	.	transcript_id "Ledus.S5G105500.t1"; gene_id "Ledus.S5G105500"
Ledus.S5	AUGUSTUS	start_codon	10364471	10364473	.	-	0	transcript_id "Ledus.S5G105500.t1"; gene_id "Ledus.S5G105500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4272.t1 is derived from g1708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15892323	15893320	.	+	.	Ledus.S1G169300
Ledus.S1	AUGUSTUS	transcript	15892323	15893320	.	+	.	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	start_codon	15892323	15892325	.	+	0	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	CDS	15892323	15892587	0.77	+	0	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	exon	15892323	15892587	.	+	.	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	intron	15892588	15892679	.	+	.	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	CDS	15892680	15892744	1	+	2	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	exon	15892680	15892744	.	+	.	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	intron	15892745	15892837	.	+	.	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	CDS	15892838	15892898	1	+	0	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	exon	15892838	15892898	.	+	.	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	intron	15892899	15892988	.	+	.	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	CDS	15892989	15893135	1	+	2	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	exon	15892989	15893135	.	+	.	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	intron	15893136	15893222	.	+	.	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	CDS	15893223	15893320	1	+	2	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	exon	15893223	15893320	.	+	.	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
Ledus.S1	AUGUSTUS	stop_codon	15893321	15893323	.	+	0	transcript_id "Ledus.S1G169300.t1"; gene_id "Ledus.S1G169300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5639.t1 is derived from g3078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25544450	25545520	.	+	.	Ledus.S1G306000
Ledus.S1	AUGUSTUS	transcript	25544450	25545520	.	+	.	transcript_id "Ledus.S1G306000.t1"; gene_id "Ledus.S1G306000"
Ledus.S1	AUGUSTUS	start_codon	25544450	25544452	.	+	0	transcript_id "Ledus.S1G306000.t1"; gene_id "Ledus.S1G306000"
Ledus.S1	AUGUSTUS	CDS	25544450	25545520	0.88	+	0	transcript_id "Ledus.S1G306000.t1"; gene_id "Ledus.S1G306000"
Ledus.S1	AUGUSTUS	exon	25544450	25545520	.	+	.	transcript_id "Ledus.S1G306000.t1"; gene_id "Ledus.S1G306000"
Ledus.S1	AUGUSTUS	stop_codon	25545521	25545523	.	+	0	transcript_id "Ledus.S1G306000.t1"; gene_id "Ledus.S1G306000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11980.t1 is derived from g5599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8256920	8259106	.	-	.	Ledus.S4G113600
Ledus.S4	AUGUSTUS	transcript	8256920	8259106	.	-	.	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	stop_codon	8256917	8256919	.	-	0	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	CDS	8256920	8257666	0.92	-	0	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	exon	8256920	8257666	.	-	.	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	intron	8257667	8257803	.	-	.	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	CDS	8257804	8258074	1	-	1	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	exon	8257804	8258074	.	-	.	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	intron	8258075	8258186	.	-	.	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	CDS	8258187	8258383	1	-	0	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	exon	8258187	8258383	.	-	.	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	intron	8258384	8258603	.	-	.	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	CDS	8258604	8258982	0.99	-	1	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	exon	8258604	8258982	.	-	.	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	intron	8258983	8259068	.	-	.	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	CDS	8259069	8259106	0.98	-	0	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	exon	8259069	8259106	.	-	.	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
Ledus.S4	AUGUSTUS	start_codon	8259104	8259106	.	-	0	transcript_id "Ledus.S4G113600.t1"; gene_id "Ledus.S4G113600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9076.t1 is derived from g10106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4380392	4383141	.	-	.	Ledus.S3G055300
Ledus.S3	AUGUSTUS	transcript	4380392	4383141	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	stop_codon	4380389	4380391	.	-	0	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	CDS	4380392	4380486	0.4	-	2	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	exon	4380392	4380486	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	intron	4380487	4380630	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	CDS	4380631	4380709	0.41	-	0	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	exon	4380631	4380709	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	intron	4380710	4380795	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	CDS	4380796	4380873	1	-	0	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	exon	4380796	4380873	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	intron	4380874	4381027	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	CDS	4381028	4381096	0.61	-	0	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	exon	4381028	4381096	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	intron	4381097	4381200	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	CDS	4381201	4381273	0.45	-	1	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	exon	4381201	4381273	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	intron	4381274	4381413	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	CDS	4381414	4381568	0.75	-	0	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	exon	4381414	4381568	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	intron	4381569	4381644	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	CDS	4381645	4381759	1	-	1	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	exon	4381645	4381759	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	intron	4381760	4381847	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	CDS	4381848	4382008	1	-	0	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	exon	4381848	4382008	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	intron	4382009	4382103	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	CDS	4382104	4382211	0.96	-	0	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	exon	4382104	4382211	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	intron	4382212	4382326	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	CDS	4382327	4382401	1	-	0	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	exon	4382327	4382401	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	intron	4382402	4382490	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	CDS	4382491	4383141	0.41	-	0	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	exon	4382491	4383141	.	-	.	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
Ledus.S3	AUGUSTUS	start_codon	4383139	4383141	.	-	0	transcript_id "Ledus.S3G055300.t1"; gene_id "Ledus.S3G055300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4821.t1 is derived from g2259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19958081	19958710	.	-	.	Ledus.S1G224200
Ledus.S1	AUGUSTUS	transcript	19958081	19958710	.	-	.	transcript_id "Ledus.S1G224200.t1"; gene_id "Ledus.S1G224200"
Ledus.S1	AUGUSTUS	stop_codon	19958078	19958080	.	-	0	transcript_id "Ledus.S1G224200.t1"; gene_id "Ledus.S1G224200"
Ledus.S1	AUGUSTUS	CDS	19958081	19958204	0.25	-	1	transcript_id "Ledus.S1G224200.t1"; gene_id "Ledus.S1G224200"
Ledus.S1	AUGUSTUS	exon	19958081	19958204	.	-	.	transcript_id "Ledus.S1G224200.t1"; gene_id "Ledus.S1G224200"
Ledus.S1	AUGUSTUS	intron	19958205	19958364	.	-	.	transcript_id "Ledus.S1G224200.t1"; gene_id "Ledus.S1G224200"
Ledus.S1	AUGUSTUS	CDS	19958365	19958449	0.25	-	2	transcript_id "Ledus.S1G224200.t1"; gene_id "Ledus.S1G224200"
Ledus.S1	AUGUSTUS	exon	19958365	19958449	.	-	.	transcript_id "Ledus.S1G224200.t1"; gene_id "Ledus.S1G224200"
Ledus.S1	AUGUSTUS	intron	19958450	19958574	.	-	.	transcript_id "Ledus.S1G224200.t1"; gene_id "Ledus.S1G224200"
Ledus.S1	AUGUSTUS	CDS	19958575	19958710	0.6	-	0	transcript_id "Ledus.S1G224200.t1"; gene_id "Ledus.S1G224200"
Ledus.S1	AUGUSTUS	exon	19958575	19958710	.	-	.	transcript_id "Ledus.S1G224200.t1"; gene_id "Ledus.S1G224200"
Ledus.S1	AUGUSTUS	start_codon	19958708	19958710	.	-	0	transcript_id "Ledus.S1G224200.t1"; gene_id "Ledus.S1G224200"
# This transcript jg1648.t2 is derived from g8509.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1649.t1 is derived from g8510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11662783	11663403	.	+	.	Ledus.S2G153100
Ledus.S2	AUGUSTUS	transcript	11662783	11663403	.	+	.	transcript_id "Ledus.S2G153100.t1"; gene_id "Ledus.S2G153100"
Ledus.S2	AUGUSTUS	start_codon	11662783	11662785	.	+	0	transcript_id "Ledus.S2G153100.t1"; gene_id "Ledus.S2G153100"
Ledus.S2	AUGUSTUS	CDS	11662783	11663403	0.84	+	0	transcript_id "Ledus.S2G153100.t1"; gene_id "Ledus.S2G153100"
Ledus.S2	AUGUSTUS	exon	11662783	11663403	.	+	.	transcript_id "Ledus.S2G153100.t1"; gene_id "Ledus.S2G153100"
Ledus.S2	AUGUSTUS	stop_codon	11663404	11663406	.	+	0	transcript_id "Ledus.S2G153100.t1"; gene_id "Ledus.S2G153100"
# This transcript jg9517.t2 is derived from g10547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9518.t1 is derived from g10548.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7546800	7547024	.	+	.	Ledus.S3G099500
Ledus.S3	AUGUSTUS	transcript	7546800	7547024	.	+	.	transcript_id "Ledus.S3G099500.t1"; gene_id "Ledus.S3G099500"
Ledus.S3	AUGUSTUS	start_codon	7546800	7546802	.	+	0	transcript_id "Ledus.S3G099500.t1"; gene_id "Ledus.S3G099500"
Ledus.S3	AUGUSTUS	CDS	7546800	7547024	0.82	+	0	transcript_id "Ledus.S3G099500.t1"; gene_id "Ledus.S3G099500"
Ledus.S3	AUGUSTUS	exon	7546800	7547024	.	+	.	transcript_id "Ledus.S3G099500.t1"; gene_id "Ledus.S3G099500"
Ledus.S3	AUGUSTUS	stop_codon	7547025	7547027	.	+	0	transcript_id "Ledus.S3G099500.t1"; gene_id "Ledus.S3G099500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg70.t1 is derived from g9483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	225888	230638	.	-	.	Ledus.C8G003000
Ledus.C8	AUGUSTUS	transcript	225888	230638	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	stop_codon	225885	225887	.	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	225888	226004	0.96	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	225888	226004	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	226005	226104	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	226105	226179	0.98	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	226105	226179	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	226180	226283	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	226284	226439	0.98	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	226284	226439	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	226440	226532	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	226533	226610	0.96	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	226533	226610	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	226611	226728	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	226729	226829	0.97	-	2	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	226729	226829	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	226830	226911	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	226912	227059	1	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	226912	227059	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	227060	227192	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	227193	227337	1	-	1	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	227193	227337	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	227338	227425	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	227426	227532	1	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	227426	227532	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	227533	227641	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	227642	227770	1	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	227642	227770	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	227771	227895	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	227896	228006	1	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	227896	228006	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	228007	228098	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	228099	228228	1	-	1	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	228099	228228	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	228229	228365	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	228366	228485	1	-	1	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	228366	228485	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	228486	228805	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	228806	228927	1	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	228806	228927	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	228928	229013	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	229014	229097	1	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	229014	229097	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	229098	229178	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	229179	229295	1	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	229179	229295	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	229296	229371	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	229372	229452	1	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	229372	229452	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	229453	229617	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	229618	229677	1	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	229618	229677	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	229678	229853	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	229854	229896	1	-	1	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	229854	229896	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	229897	230007	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	230008	230106	0.88	-	1	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	230008	230106	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	230107	230183	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	230184	230329	1	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	230184	230329	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	intron	230330	230518	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	CDS	230519	230638	0.81	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	exon	230519	230638	.	-	.	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
Ledus.C8	AUGUSTUS	start_codon	230636	230638	.	-	0	transcript_id "Ledus.C8G003000.t1"; gene_id "Ledus.C8G003000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7649.t1 is derived from g12320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4810326	4811823	.	-	.	Ledus.S5G042700
Ledus.S5	AUGUSTUS	transcript	4810326	4811823	.	-	.	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	stop_codon	4810323	4810325	.	-	0	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	CDS	4810326	4810526	0.84	-	0	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	exon	4810326	4810526	.	-	.	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	intron	4810527	4810629	.	-	.	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	CDS	4810630	4810765	0.82	-	1	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	exon	4810630	4810765	.	-	.	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	intron	4810766	4810894	.	-	.	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	CDS	4810895	4810998	0.72	-	0	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	exon	4810895	4810998	.	-	.	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	intron	4810999	4811420	.	-	.	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	CDS	4811421	4811672	0.62	-	0	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	exon	4811421	4811672	.	-	.	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	intron	4811673	4811769	.	-	.	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	CDS	4811770	4811823	0.51	-	0	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	exon	4811770	4811823	.	-	.	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
Ledus.S5	AUGUSTUS	start_codon	4811821	4811823	.	-	0	transcript_id "Ledus.S5G042700.t1"; gene_id "Ledus.S5G042700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2430.t1 is derived from g9293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18066801	18067635	.	-	.	Ledus.S2G231200
Ledus.S2	AUGUSTUS	transcript	18066801	18067635	.	-	.	transcript_id "Ledus.S2G231200.t1"; gene_id "Ledus.S2G231200"
Ledus.S2	AUGUSTUS	stop_codon	18066798	18066800	.	-	0	transcript_id "Ledus.S2G231200.t1"; gene_id "Ledus.S2G231200"
Ledus.S2	AUGUSTUS	CDS	18066801	18067087	1	-	2	transcript_id "Ledus.S2G231200.t1"; gene_id "Ledus.S2G231200"
Ledus.S2	AUGUSTUS	exon	18066801	18067087	.	-	.	transcript_id "Ledus.S2G231200.t1"; gene_id "Ledus.S2G231200"
Ledus.S2	AUGUSTUS	intron	18067088	18067179	.	-	.	transcript_id "Ledus.S2G231200.t1"; gene_id "Ledus.S2G231200"
Ledus.S2	AUGUSTUS	CDS	18067180	18067339	1	-	0	transcript_id "Ledus.S2G231200.t1"; gene_id "Ledus.S2G231200"
Ledus.S2	AUGUSTUS	exon	18067180	18067339	.	-	.	transcript_id "Ledus.S2G231200.t1"; gene_id "Ledus.S2G231200"
Ledus.S2	AUGUSTUS	intron	18067340	18067491	.	-	.	transcript_id "Ledus.S2G231200.t1"; gene_id "Ledus.S2G231200"
Ledus.S2	AUGUSTUS	CDS	18067492	18067635	0.99	-	0	transcript_id "Ledus.S2G231200.t1"; gene_id "Ledus.S2G231200"
Ledus.S2	AUGUSTUS	exon	18067492	18067635	.	-	.	transcript_id "Ledus.S2G231200.t1"; gene_id "Ledus.S2G231200"
Ledus.S2	AUGUSTUS	start_codon	18067633	18067635	.	-	0	transcript_id "Ledus.S2G231200.t1"; gene_id "Ledus.S2G231200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10713.t1 is derived from g11743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17334714	17336128	.	+	.	Ledus.S3G219000
Ledus.S3	AUGUSTUS	transcript	17334714	17336128	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	start_codon	17334714	17334716	.	+	0	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	CDS	17334714	17334730	1	+	0	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	exon	17334714	17334730	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	intron	17334731	17334931	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	CDS	17334932	17335067	1	+	1	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	exon	17334932	17335067	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	intron	17335068	17335167	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	CDS	17335168	17335241	1	+	0	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	exon	17335168	17335241	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	intron	17335242	17335348	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	CDS	17335349	17335442	0.9	+	1	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	exon	17335349	17335442	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	intron	17335443	17335552	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	CDS	17335553	17335684	1	+	0	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	exon	17335553	17335684	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	intron	17335685	17335767	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	CDS	17335768	17335928	1	+	0	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	exon	17335768	17335928	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	intron	17335929	17336013	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	CDS	17336014	17336128	1	+	1	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	exon	17336014	17336128	.	+	.	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
Ledus.S3	AUGUSTUS	stop_codon	17336129	17336131	.	+	0	transcript_id "Ledus.S3G219000.t1"; gene_id "Ledus.S3G219000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2958.t1 is derived from g393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4912947	4913899	.	-	.	Ledus.S1G037900
Ledus.S1	AUGUSTUS	transcript	4912947	4913899	.	-	.	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	stop_codon	4912944	4912946	.	-	0	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	CDS	4912947	4913066	0.91	-	0	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	exon	4912947	4913066	.	-	.	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	intron	4913067	4913152	.	-	.	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	CDS	4913153	4913242	1	-	0	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	exon	4913153	4913242	.	-	.	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	intron	4913243	4913326	.	-	.	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	CDS	4913327	4913497	1	-	0	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	exon	4913327	4913497	.	-	.	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	intron	4913498	4913713	.	-	.	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	CDS	4913714	4913899	0.9	-	0	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	exon	4913714	4913899	.	-	.	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
Ledus.S1	AUGUSTUS	start_codon	4913897	4913899	.	-	0	transcript_id "Ledus.S1G037900.t1"; gene_id "Ledus.S1G037900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6040.t1 is derived from g3483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28638114	28639617	.	+	.	Ledus.S1G346100
Ledus.S1	AUGUSTUS	transcript	28638114	28639617	.	+	.	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	start_codon	28638114	28638116	.	+	0	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	CDS	28638114	28638479	0.99	+	0	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	exon	28638114	28638479	.	+	.	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	intron	28638480	28638590	.	+	.	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	CDS	28638591	28638731	1	+	0	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	exon	28638591	28638731	.	+	.	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	intron	28638732	28638819	.	+	.	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	CDS	28638820	28638969	1	+	0	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	exon	28638820	28638969	.	+	.	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	intron	28638970	28639067	.	+	.	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	CDS	28639068	28639117	1	+	0	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	exon	28639068	28639117	.	+	.	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	intron	28639118	28639303	.	+	.	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	CDS	28639304	28639433	0.54	+	1	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	exon	28639304	28639433	.	+	.	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	intron	28639434	28639536	.	+	.	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	CDS	28639537	28639617	0.65	+	0	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	exon	28639537	28639617	.	+	.	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
Ledus.S1	AUGUSTUS	stop_codon	28639618	28639620	.	+	0	transcript_id "Ledus.S1G346100.t1"; gene_id "Ledus.S1G346100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11661.t1 is derived from g5280.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5801510	5802098	.	+	.	Ledus.S4G081700
Ledus.S4	AUGUSTUS	transcript	5801510	5802098	.	+	.	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	start_codon	5801510	5801512	.	+	0	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	CDS	5801510	5801528	0.94	+	0	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	exon	5801510	5801528	.	+	.	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	intron	5801529	5801601	.	+	.	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	CDS	5801602	5801699	1	+	2	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	exon	5801602	5801699	.	+	.	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	intron	5801700	5801784	.	+	.	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	CDS	5801785	5801893	1	+	0	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	exon	5801785	5801893	.	+	.	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	intron	5801894	5801982	.	+	.	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	CDS	5801983	5802098	0.97	+	2	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	exon	5801983	5802098	.	+	.	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
Ledus.S4	AUGUSTUS	stop_codon	5802099	5802101	.	+	0	transcript_id "Ledus.S4G081700.t1"; gene_id "Ledus.S4G081700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5606.t1 is derived from g3045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25342188	25345296	.	+	.	Ledus.S1G302700
Ledus.S1	AUGUSTUS	transcript	25342188	25345296	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	start_codon	25342188	25342190	.	+	0	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	CDS	25342188	25342518	0.92	+	0	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	exon	25342188	25342518	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	intron	25342519	25342935	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	CDS	25342936	25343033	1	+	2	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	exon	25342936	25343033	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	intron	25343034	25343165	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	CDS	25343166	25343252	1	+	0	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	exon	25343166	25343252	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	intron	25343253	25343352	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	CDS	25343353	25343450	1	+	0	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	exon	25343353	25343450	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	intron	25343451	25343646	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	CDS	25343647	25343704	1	+	1	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	exon	25343647	25343704	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	intron	25343705	25343876	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	CDS	25343877	25343978	1	+	0	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	exon	25343877	25343978	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	intron	25343979	25344100	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	CDS	25344101	25344162	1	+	0	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	exon	25344101	25344162	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	intron	25344163	25344370	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	CDS	25344371	25344481	1	+	1	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	exon	25344371	25344481	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	intron	25344482	25344562	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	CDS	25344563	25344644	1	+	1	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	exon	25344563	25344644	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	intron	25344645	25344725	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	CDS	25344726	25344848	1	+	0	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	exon	25344726	25344848	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	intron	25344849	25344938	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	CDS	25344939	25345055	1	+	0	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	exon	25344939	25345055	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	intron	25345056	25345137	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	CDS	25345138	25345296	0.7	+	0	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	exon	25345138	25345296	.	+	.	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
Ledus.S1	AUGUSTUS	stop_codon	25345297	25345299	.	+	0	transcript_id "Ledus.S1G302700.t1"; gene_id "Ledus.S1G302700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2006.t1 is derived from g8869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14142074	14142713	.	+	.	Ledus.S2G188800
Ledus.S2	AUGUSTUS	transcript	14142074	14142713	.	+	.	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	start_codon	14142074	14142076	.	+	0	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	CDS	14142074	14142228	1	+	0	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	exon	14142074	14142228	.	+	.	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	intron	14142229	14142322	.	+	.	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	CDS	14142323	14142403	1	+	1	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	exon	14142323	14142403	.	+	.	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	intron	14142404	14142498	.	+	.	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	CDS	14142499	14142556	0.93	+	1	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	exon	14142499	14142556	.	+	.	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	intron	14142557	14142665	.	+	.	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	CDS	14142666	14142713	0.93	+	0	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	exon	14142666	14142713	.	+	.	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
Ledus.S2	AUGUSTUS	stop_codon	14142714	14142716	.	+	0	transcript_id "Ledus.S2G188800.t1"; gene_id "Ledus.S2G188800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6829.t1 is derived from g4273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34550685	34551473	.	-	.	Ledus.S1G425000
Ledus.S1	AUGUSTUS	transcript	34550685	34551473	.	-	.	transcript_id "Ledus.S1G425000.t1"; gene_id "Ledus.S1G425000"
Ledus.S1	AUGUSTUS	stop_codon	34550682	34550684	.	-	0	transcript_id "Ledus.S1G425000.t1"; gene_id "Ledus.S1G425000"
Ledus.S1	AUGUSTUS	CDS	34550685	34551320	0.96	-	0	transcript_id "Ledus.S1G425000.t1"; gene_id "Ledus.S1G425000"
Ledus.S1	AUGUSTUS	exon	34550685	34551320	.	-	.	transcript_id "Ledus.S1G425000.t1"; gene_id "Ledus.S1G425000"
Ledus.S1	AUGUSTUS	intron	34551321	34551464	.	-	.	transcript_id "Ledus.S1G425000.t1"; gene_id "Ledus.S1G425000"
Ledus.S1	AUGUSTUS	CDS	34551465	34551473	0.96	-	0	transcript_id "Ledus.S1G425000.t1"; gene_id "Ledus.S1G425000"
Ledus.S1	AUGUSTUS	exon	34551465	34551473	.	-	.	transcript_id "Ledus.S1G425000.t1"; gene_id "Ledus.S1G425000"
Ledus.S1	AUGUSTUS	start_codon	34551471	34551473	.	-	0	transcript_id "Ledus.S1G425000.t1"; gene_id "Ledus.S1G425000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2085.t1 is derived from g8948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14654026	14660123	.	-	.	Ledus.S2G196700
Ledus.S2	AUGUSTUS	transcript	14654026	14660123	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	stop_codon	14654023	14654025	.	-	0	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14654026	14654460	0.64	-	0	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14654026	14654460	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14654461	14654655	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14654656	14654745	1	-	0	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14654656	14654745	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14654746	14654884	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14654885	14655101	0.96	-	1	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14654885	14655101	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14655102	14655180	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14655181	14655652	0.48	-	2	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14655181	14655652	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14655653	14655743	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14655744	14655950	1	-	2	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14655744	14655950	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14655951	14656132	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14656133	14656274	1	-	0	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14656133	14656274	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14656275	14656368	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14656369	14656505	1	-	2	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14656369	14656505	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14656506	14656636	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14656637	14656841	1	-	0	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14656637	14656841	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14656842	14656968	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14656969	14657130	0.8	-	0	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14656969	14657130	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14657131	14657237	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14657238	14657359	0.79	-	2	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14657238	14657359	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14657360	14657464	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14657465	14657725	0.99	-	2	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14657465	14657725	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14657726	14657824	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14657825	14657924	0.78	-	0	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14657825	14657924	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14657925	14658122	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14658123	14658368	1	-	0	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14658123	14658368	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14658369	14658497	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14658498	14658707	1	-	0	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14658498	14658707	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14658708	14658820	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14658821	14658974	0.48	-	1	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14658821	14658974	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14658975	14659083	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14659084	14659162	0.9	-	2	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14659084	14659162	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14659163	14659250	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14659251	14659398	1	-	0	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14659251	14659398	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	intron	14659399	14659487	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	CDS	14659488	14660123	0.91	-	0	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	exon	14659488	14660123	.	-	.	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
Ledus.S2	AUGUSTUS	start_codon	14660121	14660123	.	-	0	transcript_id "Ledus.S2G196700.t1"; gene_id "Ledus.S2G196700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2781.t1 is derived from g215.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3690521	3692850	.	-	.	Ledus.S1G020200
Ledus.S1	AUGUSTUS	transcript	3690521	3692850	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	stop_codon	3690518	3690520	.	-	0	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	CDS	3690521	3690575	1	-	1	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	exon	3690521	3690575	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	intron	3690576	3690656	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	CDS	3690657	3690809	1	-	1	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	exon	3690657	3690809	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	intron	3690810	3690943	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	CDS	3690944	3691011	1	-	0	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	exon	3690944	3691011	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	intron	3691012	3691162	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	CDS	3691163	3691264	0.95	-	0	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	exon	3691163	3691264	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	intron	3691265	3691380	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	CDS	3691381	3691452	0.95	-	0	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	exon	3691381	3691452	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	intron	3691453	3691561	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	CDS	3691562	3691610	1	-	1	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	exon	3691562	3691610	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	intron	3691611	3691720	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	CDS	3691721	3691854	0.96	-	0	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	exon	3691721	3691854	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	intron	3691855	3691991	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	CDS	3691992	3692058	1	-	1	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	exon	3691992	3692058	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	intron	3692059	3692170	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	CDS	3692171	3692280	1	-	0	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	exon	3692171	3692280	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	intron	3692281	3692392	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	CDS	3692393	3692509	1	-	0	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	exon	3692393	3692509	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	intron	3692510	3692600	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	CDS	3692601	3692683	1	-	2	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	exon	3692601	3692683	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	intron	3692684	3692828	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	CDS	3692829	3692850	1	-	0	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	exon	3692829	3692850	.	-	.	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
Ledus.S1	AUGUSTUS	start_codon	3692848	3692850	.	-	0	transcript_id "Ledus.S1G020200.t1"; gene_id "Ledus.S1G020200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10294.t1 is derived from g11324.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14105367	14107863	.	+	.	Ledus.S3G177100
Ledus.S3	AUGUSTUS	transcript	14105367	14107863	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	start_codon	14105367	14105369	.	+	0	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	CDS	14105367	14105516	0.7	+	0	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	exon	14105367	14105516	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	intron	14105517	14105719	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	CDS	14105720	14105828	1	+	0	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	exon	14105720	14105828	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	intron	14105829	14105911	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	CDS	14105912	14105991	1	+	2	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	exon	14105912	14105991	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	intron	14105992	14106138	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	CDS	14106139	14106161	0.92	+	0	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	exon	14106139	14106161	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	intron	14106162	14106570	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	CDS	14106571	14106761	0.49	+	1	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	exon	14106571	14106761	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	intron	14106762	14107030	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	CDS	14107031	14107166	0.32	+	2	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	exon	14107031	14107166	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	intron	14107167	14107337	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	CDS	14107338	14107522	0.5	+	1	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	exon	14107338	14107522	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	intron	14107523	14107597	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	CDS	14107598	14107863	0.52	+	2	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	exon	14107598	14107863	.	+	.	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
Ledus.S3	AUGUSTUS	stop_codon	14107864	14107866	.	+	0	transcript_id "Ledus.S3G177100.t1"; gene_id "Ledus.S3G177100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6911.t1 is derived from g4355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35130358	35132802	.	-	.	Ledus.S1G433200
Ledus.S1	AUGUSTUS	transcript	35130358	35132802	.	-	.	transcript_id "Ledus.S1G433200.t1"; gene_id "Ledus.S1G433200"
Ledus.S1	AUGUSTUS	stop_codon	35130355	35130357	.	-	0	transcript_id "Ledus.S1G433200.t1"; gene_id "Ledus.S1G433200"
Ledus.S1	AUGUSTUS	CDS	35130358	35132161	1	-	1	transcript_id "Ledus.S1G433200.t1"; gene_id "Ledus.S1G433200"
Ledus.S1	AUGUSTUS	exon	35130358	35132161	.	-	.	transcript_id "Ledus.S1G433200.t1"; gene_id "Ledus.S1G433200"
Ledus.S1	AUGUSTUS	intron	35132162	35132293	.	-	.	transcript_id "Ledus.S1G433200.t1"; gene_id "Ledus.S1G433200"
Ledus.S1	AUGUSTUS	CDS	35132294	35132802	0.76	-	0	transcript_id "Ledus.S1G433200.t1"; gene_id "Ledus.S1G433200"
Ledus.S1	AUGUSTUS	exon	35132294	35132802	.	-	.	transcript_id "Ledus.S1G433200.t1"; gene_id "Ledus.S1G433200"
Ledus.S1	AUGUSTUS	start_codon	35132800	35132802	.	-	0	transcript_id "Ledus.S1G433200.t1"; gene_id "Ledus.S1G433200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12506.t1 is derived from g6127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12547605	12547958	.	-	.	Ledus.S4G166200
Ledus.S4	AUGUSTUS	transcript	12547605	12547958	.	-	.	transcript_id "Ledus.S4G166200.t1"; gene_id "Ledus.S4G166200"
Ledus.S4	AUGUSTUS	stop_codon	12547602	12547604	.	-	0	transcript_id "Ledus.S4G166200.t1"; gene_id "Ledus.S4G166200"
Ledus.S4	AUGUSTUS	CDS	12547605	12547958	0.95	-	0	transcript_id "Ledus.S4G166200.t1"; gene_id "Ledus.S4G166200"
Ledus.S4	AUGUSTUS	exon	12547605	12547958	.	-	.	transcript_id "Ledus.S4G166200.t1"; gene_id "Ledus.S4G166200"
Ledus.S4	AUGUSTUS	start_codon	12547956	12547958	.	-	0	transcript_id "Ledus.S4G166200.t1"; gene_id "Ledus.S4G166200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9615.t1 is derived from g10645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8419456	8422074	.	+	.	Ledus.S3G109200
Ledus.S3	AUGUSTUS	transcript	8419456	8422074	.	+	.	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	start_codon	8419456	8419458	.	+	0	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	CDS	8419456	8420128	1	+	0	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	exon	8419456	8420128	.	+	.	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	intron	8420129	8420219	.	+	.	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	CDS	8420220	8420443	1	+	2	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	exon	8420220	8420443	.	+	.	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	intron	8420444	8420547	.	+	.	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	CDS	8420548	8420709	1	+	0	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	exon	8420548	8420709	.	+	.	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	intron	8420710	8420799	.	+	.	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	CDS	8420800	8421141	1	+	0	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	exon	8420800	8421141	.	+	.	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	intron	8421142	8421262	.	+	.	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	CDS	8421263	8421750	0.88	+	0	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	exon	8421263	8421750	.	+	.	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	intron	8421751	8421866	.	+	.	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	CDS	8421867	8422074	0.98	+	1	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	exon	8421867	8422074	.	+	.	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
Ledus.S3	AUGUSTUS	stop_codon	8422075	8422077	.	+	0	transcript_id "Ledus.S3G109200.t1"; gene_id "Ledus.S3G109200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8440.t1 is derived from g13112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11700056	11701921	.	+	.	Ledus.S5G121800
Ledus.S5	AUGUSTUS	transcript	11700056	11701921	.	+	.	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	start_codon	11700056	11700058	.	+	0	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	CDS	11700056	11700133	0.54	+	0	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	exon	11700056	11700133	.	+	.	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	intron	11700134	11700304	.	+	.	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	CDS	11700305	11700381	0.8	+	0	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	exon	11700305	11700381	.	+	.	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	intron	11700382	11700443	.	+	.	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	CDS	11700444	11700963	0.8	+	1	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	exon	11700444	11700963	.	+	.	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	intron	11700964	11701476	.	+	.	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	CDS	11701477	11701593	1	+	0	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	exon	11701477	11701593	.	+	.	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	intron	11701594	11701747	.	+	.	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	CDS	11701748	11701921	0.41	+	0	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	exon	11701748	11701921	.	+	.	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
Ledus.S5	AUGUSTUS	stop_codon	11701922	11701924	.	+	0	transcript_id "Ledus.S5G121800.t1"; gene_id "Ledus.S5G121800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11074.t1 is derived from g4692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1610601	1611941	.	+	.	Ledus.S4G023000
Ledus.S4	AUGUSTUS	transcript	1610601	1611941	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	start_codon	1610601	1610603	.	+	0	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	CDS	1610601	1610648	0.98	+	0	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	exon	1610601	1610648	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	intron	1610649	1610729	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	CDS	1610730	1610870	1	+	0	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	exon	1610730	1610870	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	intron	1610871	1610952	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	CDS	1610953	1611075	1	+	0	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	exon	1610953	1611075	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	intron	1611076	1611174	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	CDS	1611175	1611340	1	+	0	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	exon	1611175	1611340	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	intron	1611341	1611431	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	CDS	1611432	1611543	1	+	2	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	exon	1611432	1611543	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	intron	1611544	1611620	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	CDS	1611621	1611746	1	+	1	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	exon	1611621	1611746	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	intron	1611747	1611838	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	CDS	1611839	1611941	1	+	1	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	exon	1611839	1611941	.	+	.	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
Ledus.S4	AUGUSTUS	stop_codon	1611942	1611944	.	+	0	transcript_id "Ledus.S4G023000.t1"; gene_id "Ledus.S4G023000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9929.t1 is derived from g10959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11259743	11260114	.	-	.	Ledus.S3G140600
Ledus.S3	AUGUSTUS	transcript	11259743	11260114	.	-	.	transcript_id "Ledus.S3G140600.t1"; gene_id "Ledus.S3G140600"
Ledus.S3	AUGUSTUS	stop_codon	11259740	11259742	.	-	0	transcript_id "Ledus.S3G140600.t1"; gene_id "Ledus.S3G140600"
Ledus.S3	AUGUSTUS	CDS	11259743	11260114	0.43	-	0	transcript_id "Ledus.S3G140600.t1"; gene_id "Ledus.S3G140600"
Ledus.S3	AUGUSTUS	exon	11259743	11260114	.	-	.	transcript_id "Ledus.S3G140600.t1"; gene_id "Ledus.S3G140600"
Ledus.S3	AUGUSTUS	start_codon	11260112	11260114	.	-	0	transcript_id "Ledus.S3G140600.t1"; gene_id "Ledus.S3G140600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1204.t1 is derived from g8065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8591618	8592122	.	-	.	Ledus.S2G108600
Ledus.S2	AUGUSTUS	transcript	8591618	8592122	.	-	.	transcript_id "Ledus.S2G108600.t1"; gene_id "Ledus.S2G108600"
Ledus.S2	AUGUSTUS	stop_codon	8591615	8591617	.	-	0	transcript_id "Ledus.S2G108600.t1"; gene_id "Ledus.S2G108600"
Ledus.S2	AUGUSTUS	CDS	8591618	8591680	1	-	0	transcript_id "Ledus.S2G108600.t1"; gene_id "Ledus.S2G108600"
Ledus.S2	AUGUSTUS	exon	8591618	8591680	.	-	.	transcript_id "Ledus.S2G108600.t1"; gene_id "Ledus.S2G108600"
Ledus.S2	AUGUSTUS	intron	8591681	8591777	.	-	.	transcript_id "Ledus.S2G108600.t1"; gene_id "Ledus.S2G108600"
Ledus.S2	AUGUSTUS	CDS	8591778	8591949	0.94	-	1	transcript_id "Ledus.S2G108600.t1"; gene_id "Ledus.S2G108600"
Ledus.S2	AUGUSTUS	exon	8591778	8591949	.	-	.	transcript_id "Ledus.S2G108600.t1"; gene_id "Ledus.S2G108600"
Ledus.S2	AUGUSTUS	intron	8591950	8592111	.	-	.	transcript_id "Ledus.S2G108600.t1"; gene_id "Ledus.S2G108600"
Ledus.S2	AUGUSTUS	CDS	8592112	8592122	0.66	-	0	transcript_id "Ledus.S2G108600.t1"; gene_id "Ledus.S2G108600"
Ledus.S2	AUGUSTUS	exon	8592112	8592122	.	-	.	transcript_id "Ledus.S2G108600.t1"; gene_id "Ledus.S2G108600"
Ledus.S2	AUGUSTUS	start_codon	8592120	8592122	.	-	0	transcript_id "Ledus.S2G108600.t1"; gene_id "Ledus.S2G108600"
# This transcript jg6358.t2 is derived from g3801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6359.t1 is derived from g3802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30744740	30747481	.	+	.	Ledus.S1G378000
Ledus.S1	AUGUSTUS	transcript	30744740	30747481	.	+	.	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	start_codon	30744740	30744742	.	+	0	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	CDS	30744740	30744954	0.41	+	0	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	exon	30744740	30744954	.	+	.	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	intron	30744955	30745927	.	+	.	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	CDS	30745928	30746056	1	+	1	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	exon	30745928	30746056	.	+	.	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	intron	30746057	30746154	.	+	.	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	CDS	30746155	30746204	1	+	1	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	exon	30746155	30746204	.	+	.	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	intron	30746205	30746315	.	+	.	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	CDS	30746316	30746413	1	+	2	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	exon	30746316	30746413	.	+	.	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	intron	30746414	30746607	.	+	.	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	CDS	30746608	30746892	1	+	0	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	exon	30746608	30746892	.	+	.	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	intron	30746893	30746980	.	+	.	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	CDS	30746981	30747481	0.93	+	0	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	exon	30746981	30747481	.	+	.	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
Ledus.S1	AUGUSTUS	stop_codon	30747482	30747484	.	+	0	transcript_id "Ledus.S1G378000.t1"; gene_id "Ledus.S1G378000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4973.t1 is derived from g2411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20936683	20940259	.	+	.	Ledus.S1G239400
Ledus.S1	AUGUSTUS	transcript	20936683	20940259	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	start_codon	20936683	20936685	.	+	0	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20936683	20936823	0.95	+	0	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20936683	20936823	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20936824	20937176	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20937177	20937263	1	+	0	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20937177	20937263	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20937264	20937348	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20937349	20937480	0.85	+	0	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20937349	20937480	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20937481	20937585	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20937586	20937658	0.94	+	0	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20937586	20937658	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20937659	20937837	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20937838	20937860	1	+	2	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20937838	20937860	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20937861	20937962	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20937963	20938026	1	+	0	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20937963	20938026	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20938027	20938251	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20938252	20938297	1	+	2	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20938252	20938297	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20938298	20938481	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20938482	20938662	1	+	1	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20938482	20938662	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20938663	20938862	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20938863	20939039	1	+	0	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20938863	20939039	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20939040	20939200	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20939201	20939369	0.93	+	0	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20939201	20939369	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20939370	20939486	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20939487	20939608	0.78	+	2	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20939487	20939608	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20939609	20939780	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20939781	20939878	1	+	0	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20939781	20939878	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20939879	20939963	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20939964	20940113	1	+	1	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20939964	20940113	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	intron	20940114	20940204	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	CDS	20940205	20940259	0.91	+	1	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	exon	20940205	20940259	.	+	.	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
Ledus.S1	AUGUSTUS	stop_codon	20940260	20940262	.	+	0	transcript_id "Ledus.S1G239400.t1"; gene_id "Ledus.S1G239400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2484.t1 is derived from g9347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18399133	18400846	.	+	.	Ledus.S2G236600
Ledus.S2	AUGUSTUS	transcript	18399133	18400846	.	+	.	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	start_codon	18399133	18399135	.	+	0	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	CDS	18399133	18399161	0.92	+	0	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	exon	18399133	18399161	.	+	.	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	intron	18399162	18399571	.	+	.	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	CDS	18399572	18399583	1	+	1	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	exon	18399572	18399583	.	+	.	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	intron	18399584	18399771	.	+	.	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	CDS	18399772	18399835	0.99	+	1	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	exon	18399772	18399835	.	+	.	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	intron	18399836	18400123	.	+	.	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	CDS	18400124	18400171	1	+	0	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	exon	18400124	18400171	.	+	.	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	intron	18400172	18400323	.	+	.	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	CDS	18400324	18400391	1	+	0	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	exon	18400324	18400391	.	+	.	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	intron	18400392	18400839	.	+	.	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	CDS	18400840	18400846	1	+	1	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	exon	18400840	18400846	.	+	.	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
Ledus.S2	AUGUSTUS	stop_codon	18400847	18400849	.	+	0	transcript_id "Ledus.S2G236600.t1"; gene_id "Ledus.S2G236600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3058.t1 is derived from g493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5584820	5590408	.	-	.	Ledus.S1G047900
Ledus.S1	AUGUSTUS	transcript	5584820	5590408	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	stop_codon	5584817	5584819	.	-	0	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5584820	5585681	1	-	1	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5584820	5585681	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5585682	5585767	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5585768	5586006	1	-	0	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5585768	5586006	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5586007	5586096	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5586097	5586359	1	-	2	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5586097	5586359	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5586360	5586442	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5586443	5586746	1	-	0	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5586443	5586746	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5586747	5586839	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5586840	5586935	1	-	0	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5586840	5586935	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5586936	5587021	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5587022	5587129	1	-	0	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5587022	5587129	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5587130	5587224	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5587225	5587405	0.67	-	1	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5587225	5587405	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5587406	5587621	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5587622	5587946	0.4	-	2	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5587622	5587946	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5587947	5588170	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5588171	5588340	0.65	-	1	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5588171	5588340	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5588341	5588470	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5588471	5588521	0.54	-	1	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5588471	5588521	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5588522	5588687	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5588688	5588880	0.58	-	2	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5588688	5588880	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5588881	5589001	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5589002	5589130	1	-	2	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5589002	5589130	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5589131	5589319	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5589320	5589577	0.99	-	2	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5589320	5589577	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5589578	5589760	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5589761	5589816	1	-	1	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5589761	5589816	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5589817	5590034	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5590035	5590125	1	-	2	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5590035	5590125	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	intron	5590126	5590323	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	CDS	5590324	5590408	1	-	0	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	exon	5590324	5590408	.	-	.	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
Ledus.S1	AUGUSTUS	start_codon	5590406	5590408	.	-	0	transcript_id "Ledus.S1G047900.t1"; gene_id "Ledus.S1G047900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1116.t1 is derived from g7977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7633514	7633723	.	-	.	Ledus.S2G099800
Ledus.S2	AUGUSTUS	transcript	7633514	7633723	.	-	.	transcript_id "Ledus.S2G099800.t1"; gene_id "Ledus.S2G099800"
Ledus.S2	AUGUSTUS	stop_codon	7633511	7633513	.	-	0	transcript_id "Ledus.S2G099800.t1"; gene_id "Ledus.S2G099800"
Ledus.S2	AUGUSTUS	CDS	7633514	7633723	0.58	-	0	transcript_id "Ledus.S2G099800.t1"; gene_id "Ledus.S2G099800"
Ledus.S2	AUGUSTUS	exon	7633514	7633723	.	-	.	transcript_id "Ledus.S2G099800.t1"; gene_id "Ledus.S2G099800"
Ledus.S2	AUGUSTUS	start_codon	7633721	7633723	.	-	0	transcript_id "Ledus.S2G099800.t1"; gene_id "Ledus.S2G099800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5128.t1 is derived from g2567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21876514	21876820	.	-	.	Ledus.S1G254900
Ledus.S1	AUGUSTUS	transcript	21876514	21876820	.	-	.	transcript_id "Ledus.S1G254900.t1"; gene_id "Ledus.S1G254900"
Ledus.S1	AUGUSTUS	stop_codon	21876511	21876513	.	-	0	transcript_id "Ledus.S1G254900.t1"; gene_id "Ledus.S1G254900"
Ledus.S1	AUGUSTUS	CDS	21876514	21876596	0.98	-	2	transcript_id "Ledus.S1G254900.t1"; gene_id "Ledus.S1G254900"
Ledus.S1	AUGUSTUS	exon	21876514	21876596	.	-	.	transcript_id "Ledus.S1G254900.t1"; gene_id "Ledus.S1G254900"
Ledus.S1	AUGUSTUS	intron	21876597	21876681	.	-	.	transcript_id "Ledus.S1G254900.t1"; gene_id "Ledus.S1G254900"
Ledus.S1	AUGUSTUS	CDS	21876682	21876820	0.99	-	0	transcript_id "Ledus.S1G254900.t1"; gene_id "Ledus.S1G254900"
Ledus.S1	AUGUSTUS	exon	21876682	21876820	.	-	.	transcript_id "Ledus.S1G254900.t1"; gene_id "Ledus.S1G254900"
Ledus.S1	AUGUSTUS	start_codon	21876818	21876820	.	-	0	transcript_id "Ledus.S1G254900.t1"; gene_id "Ledus.S1G254900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg914.t1 is derived from g7775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6158186	6159572	.	-	.	Ledus.S2G079600
Ledus.S2	AUGUSTUS	transcript	6158186	6159572	.	-	.	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	stop_codon	6158183	6158185	.	-	0	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	CDS	6158186	6158196	0.81	-	2	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	exon	6158186	6158196	.	-	.	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	intron	6158197	6158342	.	-	.	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	CDS	6158343	6158709	0.8	-	0	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	exon	6158343	6158709	.	-	.	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	intron	6158710	6158814	.	-	.	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	CDS	6158815	6158954	0.96	-	2	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	exon	6158815	6158954	.	-	.	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	intron	6158955	6159151	.	-	.	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	CDS	6159152	6159269	1	-	0	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	exon	6159152	6159269	.	-	.	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	intron	6159270	6159455	.	-	.	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	CDS	6159456	6159572	0.91	-	0	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	exon	6159456	6159572	.	-	.	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
Ledus.S2	AUGUSTUS	start_codon	6159570	6159572	.	-	0	transcript_id "Ledus.S2G079600.t1"; gene_id "Ledus.S2G079600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1324.t1 is derived from g8185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9258879	9259289	.	-	.	Ledus.S2G120600
Ledus.S2	AUGUSTUS	transcript	9258879	9259289	.	-	.	transcript_id "Ledus.S2G120600.t1"; gene_id "Ledus.S2G120600"
Ledus.S2	AUGUSTUS	stop_codon	9258876	9258878	.	-	0	transcript_id "Ledus.S2G120600.t1"; gene_id "Ledus.S2G120600"
Ledus.S2	AUGUSTUS	CDS	9258879	9259289	0.64	-	0	transcript_id "Ledus.S2G120600.t1"; gene_id "Ledus.S2G120600"
Ledus.S2	AUGUSTUS	exon	9258879	9259289	.	-	.	transcript_id "Ledus.S2G120600.t1"; gene_id "Ledus.S2G120600"
Ledus.S2	AUGUSTUS	start_codon	9259287	9259289	.	-	0	transcript_id "Ledus.S2G120600.t1"; gene_id "Ledus.S2G120600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3060.t1 is derived from g495.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5605728	5606647	.	-	.	Ledus.S1G048100
Ledus.S1	AUGUSTUS	transcript	5605728	5606647	.	-	.	transcript_id "Ledus.S1G048100.t1"; gene_id "Ledus.S1G048100"
Ledus.S1	AUGUSTUS	stop_codon	5605725	5605727	.	-	0	transcript_id "Ledus.S1G048100.t1"; gene_id "Ledus.S1G048100"
Ledus.S1	AUGUSTUS	CDS	5605728	5605992	1	-	1	transcript_id "Ledus.S1G048100.t1"; gene_id "Ledus.S1G048100"
Ledus.S1	AUGUSTUS	exon	5605728	5605992	.	-	.	transcript_id "Ledus.S1G048100.t1"; gene_id "Ledus.S1G048100"
Ledus.S1	AUGUSTUS	intron	5605993	5606081	.	-	.	transcript_id "Ledus.S1G048100.t1"; gene_id "Ledus.S1G048100"
Ledus.S1	AUGUSTUS	CDS	5606082	5606485	1	-	0	transcript_id "Ledus.S1G048100.t1"; gene_id "Ledus.S1G048100"
Ledus.S1	AUGUSTUS	exon	5606082	5606485	.	-	.	transcript_id "Ledus.S1G048100.t1"; gene_id "Ledus.S1G048100"
Ledus.S1	AUGUSTUS	intron	5606486	5606578	.	-	.	transcript_id "Ledus.S1G048100.t1"; gene_id "Ledus.S1G048100"
Ledus.S1	AUGUSTUS	CDS	5606579	5606647	0.83	-	0	transcript_id "Ledus.S1G048100.t1"; gene_id "Ledus.S1G048100"
Ledus.S1	AUGUSTUS	exon	5606579	5606647	.	-	.	transcript_id "Ledus.S1G048100.t1"; gene_id "Ledus.S1G048100"
Ledus.S1	AUGUSTUS	start_codon	5606645	5606647	.	-	0	transcript_id "Ledus.S1G048100.t1"; gene_id "Ledus.S1G048100"
# This transcript jg6747.t2 is derived from g4190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6748.t1 is derived from g4191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33726567	33729762	.	-	.	Ledus.S1G416900
Ledus.S1	AUGUSTUS	transcript	33726567	33729762	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	stop_codon	33726564	33726566	.	-	0	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33726567	33726593	0.99	-	0	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33726567	33726593	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	intron	33726594	33726713	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33726714	33726791	1	-	0	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33726714	33726791	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	intron	33726792	33726890	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33726891	33727531	0.93	-	2	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33726891	33727531	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	intron	33727532	33727614	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33727615	33727741	1	-	0	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33727615	33727741	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	intron	33727742	33728094	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33728095	33728179	1	-	1	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33728095	33728179	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	intron	33728180	33728262	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33728263	33728321	1	-	0	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33728263	33728321	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	intron	33728322	33728411	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33728412	33728492	1	-	0	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33728412	33728492	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	intron	33728493	33728607	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33728608	33728680	0.92	-	1	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33728608	33728680	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	intron	33728681	33728792	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33728793	33728888	0.65	-	1	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33728793	33728888	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	intron	33728889	33728995	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33728996	33729069	0.87	-	0	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33728996	33729069	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	intron	33729070	33729219	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33729220	33729317	1	-	2	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33729220	33729317	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	intron	33729318	33729493	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33729494	33729569	1	-	0	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33729494	33729569	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	intron	33729570	33729663	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	CDS	33729664	33729762	0.67	-	0	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	exon	33729664	33729762	.	-	.	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
Ledus.S1	AUGUSTUS	start_codon	33729760	33729762	.	-	0	transcript_id "Ledus.S1G416900.t1"; gene_id "Ledus.S1G416900"
# This transcript jg9479.t2 is derived from g10509.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9480.t1 is derived from g10510.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7286884	7288779	.	+	.	Ledus.S3G095700
Ledus.S3	AUGUSTUS	transcript	7286884	7288779	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	start_codon	7286884	7286886	.	+	0	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7286884	7286986	0.97	+	0	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7286884	7286986	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	intron	7286987	7287073	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7287074	7287143	1	+	2	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7287074	7287143	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	intron	7287144	7287247	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7287248	7287363	1	+	1	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7287248	7287363	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	intron	7287364	7287442	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7287443	7288019	1	+	2	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7287443	7288019	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	intron	7288020	7288105	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7288106	7288306	1	+	1	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7288106	7288306	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	intron	7288307	7288381	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7288382	7288555	1	+	1	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7288382	7288555	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	intron	7288556	7288664	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7288665	7288779	1	+	1	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7288665	7288779	.	+	.	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	stop_codon	7288780	7288782	.	+	0	transcript_id "Ledus.S3G095700.t1"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	transcript	7286884	7288779	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	start_codon	7286884	7286886	.	+	0	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7286884	7286986	0.97	+	0	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7286884	7286986	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	intron	7286987	7287073	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7287074	7287143	1	+	2	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7287074	7287143	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	intron	7287144	7287247	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7287248	7287363	1	+	1	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7287248	7287363	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	intron	7287364	7287445	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7287446	7288019	0.99	+	2	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7287446	7288019	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	intron	7288020	7288105	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7288106	7288306	1	+	1	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7288106	7288306	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	intron	7288307	7288381	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7288382	7288555	0.99	+	1	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7288382	7288555	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	intron	7288556	7288664	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	CDS	7288665	7288779	0.99	+	1	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	exon	7288665	7288779	.	+	.	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
Ledus.S3	AUGUSTUS	stop_codon	7288780	7288782	.	+	0	transcript_id "Ledus.S3G095700.t2"; gene_id "Ledus.S3G095700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12052.t1 is derived from g5671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9204764	9208591	.	-	.	Ledus.S4G120800
Ledus.S4	AUGUSTUS	transcript	9204764	9208591	.	-	.	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	stop_codon	9204761	9204763	.	-	0	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	CDS	9204764	9207275	0.24	-	1	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	exon	9204764	9207275	.	-	.	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	intron	9207276	9207379	.	-	.	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	CDS	9207380	9207559	0.66	-	1	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	exon	9207380	9207559	.	-	.	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	intron	9207560	9207688	.	-	.	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	CDS	9207689	9207804	1	-	0	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	exon	9207689	9207804	.	-	.	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	intron	9207805	9207892	.	-	.	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	CDS	9207893	9208024	0.99	-	0	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	exon	9207893	9208024	.	-	.	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	intron	9208025	9208125	.	-	.	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	CDS	9208126	9208168	0.79	-	1	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	exon	9208126	9208168	.	-	.	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	intron	9208169	9208256	.	-	.	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	CDS	9208257	9208591	0.35	-	0	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	exon	9208257	9208591	.	-	.	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
Ledus.S4	AUGUSTUS	start_codon	9208589	9208591	.	-	0	transcript_id "Ledus.S4G120800.t1"; gene_id "Ledus.S4G120800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3341.t1 is derived from g776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7596632	7597152	.	-	.	Ledus.S1G076200
Ledus.S1	AUGUSTUS	transcript	7596632	7597152	.	-	.	transcript_id "Ledus.S1G076200.t1"; gene_id "Ledus.S1G076200"
Ledus.S1	AUGUSTUS	stop_codon	7596629	7596631	.	-	0	transcript_id "Ledus.S1G076200.t1"; gene_id "Ledus.S1G076200"
Ledus.S1	AUGUSTUS	CDS	7596632	7596751	0.64	-	0	transcript_id "Ledus.S1G076200.t1"; gene_id "Ledus.S1G076200"
Ledus.S1	AUGUSTUS	exon	7596632	7596751	.	-	.	transcript_id "Ledus.S1G076200.t1"; gene_id "Ledus.S1G076200"
Ledus.S1	AUGUSTUS	intron	7596752	7596830	.	-	.	transcript_id "Ledus.S1G076200.t1"; gene_id "Ledus.S1G076200"
Ledus.S1	AUGUSTUS	CDS	7596831	7596890	0.66	-	0	transcript_id "Ledus.S1G076200.t1"; gene_id "Ledus.S1G076200"
Ledus.S1	AUGUSTUS	exon	7596831	7596890	.	-	.	transcript_id "Ledus.S1G076200.t1"; gene_id "Ledus.S1G076200"
Ledus.S1	AUGUSTUS	intron	7596891	7597065	.	-	.	transcript_id "Ledus.S1G076200.t1"; gene_id "Ledus.S1G076200"
Ledus.S1	AUGUSTUS	CDS	7597066	7597152	0.93	-	0	transcript_id "Ledus.S1G076200.t1"; gene_id "Ledus.S1G076200"
Ledus.S1	AUGUSTUS	exon	7597066	7597152	.	-	.	transcript_id "Ledus.S1G076200.t1"; gene_id "Ledus.S1G076200"
Ledus.S1	AUGUSTUS	start_codon	7597150	7597152	.	-	0	transcript_id "Ledus.S1G076200.t1"; gene_id "Ledus.S1G076200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11161.t1 is derived from g4779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2253927	2254933	.	-	.	Ledus.S4G031700
Ledus.S4	AUGUSTUS	transcript	2253927	2254933	.	-	.	transcript_id "Ledus.S4G031700.t1"; gene_id "Ledus.S4G031700"
Ledus.S4	AUGUSTUS	stop_codon	2253924	2253926	.	-	0	transcript_id "Ledus.S4G031700.t1"; gene_id "Ledus.S4G031700"
Ledus.S4	AUGUSTUS	CDS	2253927	2254076	1	-	0	transcript_id "Ledus.S4G031700.t1"; gene_id "Ledus.S4G031700"
Ledus.S4	AUGUSTUS	exon	2253927	2254076	.	-	.	transcript_id "Ledus.S4G031700.t1"; gene_id "Ledus.S4G031700"
Ledus.S4	AUGUSTUS	intron	2254077	2254153	.	-	.	transcript_id "Ledus.S4G031700.t1"; gene_id "Ledus.S4G031700"
Ledus.S4	AUGUSTUS	CDS	2254154	2254368	0.18	-	2	transcript_id "Ledus.S4G031700.t1"; gene_id "Ledus.S4G031700"
Ledus.S4	AUGUSTUS	exon	2254154	2254368	.	-	.	transcript_id "Ledus.S4G031700.t1"; gene_id "Ledus.S4G031700"
Ledus.S4	AUGUSTUS	intron	2254369	2254833	.	-	.	transcript_id "Ledus.S4G031700.t1"; gene_id "Ledus.S4G031700"
Ledus.S4	AUGUSTUS	CDS	2254834	2254933	0.04	-	0	transcript_id "Ledus.S4G031700.t1"; gene_id "Ledus.S4G031700"
Ledus.S4	AUGUSTUS	exon	2254834	2254933	.	-	.	transcript_id "Ledus.S4G031700.t1"; gene_id "Ledus.S4G031700"
Ledus.S4	AUGUSTUS	start_codon	2254931	2254933	.	-	0	transcript_id "Ledus.S4G031700.t1"; gene_id "Ledus.S4G031700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6362.t1 is derived from g3805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30770004	30770838	.	+	.	Ledus.S1G378300
Ledus.S1	AUGUSTUS	transcript	30770004	30770838	.	+	.	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	start_codon	30770004	30770006	.	+	0	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	CDS	30770004	30770187	1	+	0	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	exon	30770004	30770187	.	+	.	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	intron	30770188	30770266	.	+	.	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	CDS	30770267	30770388	1	+	2	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	exon	30770267	30770388	.	+	.	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	intron	30770389	30770501	.	+	.	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	CDS	30770502	30770620	0.91	+	0	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	exon	30770502	30770620	.	+	.	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	intron	30770621	30770732	.	+	.	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	CDS	30770733	30770838	1	+	1	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	exon	30770733	30770838	.	+	.	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
Ledus.S1	AUGUSTUS	stop_codon	30770839	30770841	.	+	0	transcript_id "Ledus.S1G378300.t1"; gene_id "Ledus.S1G378300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg598.t1 is derived from g7459.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3560333	3560764	.	+	.	Ledus.S2G048000
Ledus.S2	AUGUSTUS	transcript	3560333	3560764	.	+	.	transcript_id "Ledus.S2G048000.t1"; gene_id "Ledus.S2G048000"
Ledus.S2	AUGUSTUS	start_codon	3560333	3560335	.	+	0	transcript_id "Ledus.S2G048000.t1"; gene_id "Ledus.S2G048000"
Ledus.S2	AUGUSTUS	CDS	3560333	3560521	0.67	+	0	transcript_id "Ledus.S2G048000.t1"; gene_id "Ledus.S2G048000"
Ledus.S2	AUGUSTUS	exon	3560333	3560521	.	+	.	transcript_id "Ledus.S2G048000.t1"; gene_id "Ledus.S2G048000"
Ledus.S2	AUGUSTUS	intron	3560522	3560605	.	+	.	transcript_id "Ledus.S2G048000.t1"; gene_id "Ledus.S2G048000"
Ledus.S2	AUGUSTUS	CDS	3560606	3560764	0.65	+	0	transcript_id "Ledus.S2G048000.t1"; gene_id "Ledus.S2G048000"
Ledus.S2	AUGUSTUS	exon	3560606	3560764	.	+	.	transcript_id "Ledus.S2G048000.t1"; gene_id "Ledus.S2G048000"
Ledus.S2	AUGUSTUS	stop_codon	3560765	3560767	.	+	0	transcript_id "Ledus.S2G048000.t1"; gene_id "Ledus.S2G048000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11556.t1 is derived from g5174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5263524	5265406	.	-	.	Ledus.S4G071200
Ledus.S4	AUGUSTUS	transcript	5263524	5265406	.	-	.	transcript_id "Ledus.S4G071200.t1"; gene_id "Ledus.S4G071200"
Ledus.S4	AUGUSTUS	stop_codon	5263521	5263523	.	-	0	transcript_id "Ledus.S4G071200.t1"; gene_id "Ledus.S4G071200"
Ledus.S4	AUGUSTUS	CDS	5263524	5263598	1	-	0	transcript_id "Ledus.S4G071200.t1"; gene_id "Ledus.S4G071200"
Ledus.S4	AUGUSTUS	exon	5263524	5263598	.	-	.	transcript_id "Ledus.S4G071200.t1"; gene_id "Ledus.S4G071200"
Ledus.S4	AUGUSTUS	intron	5263599	5263693	.	-	.	transcript_id "Ledus.S4G071200.t1"; gene_id "Ledus.S4G071200"
Ledus.S4	AUGUSTUS	CDS	5263694	5265406	0.99	-	0	transcript_id "Ledus.S4G071200.t1"; gene_id "Ledus.S4G071200"
Ledus.S4	AUGUSTUS	exon	5263694	5265406	.	-	.	transcript_id "Ledus.S4G071200.t1"; gene_id "Ledus.S4G071200"
Ledus.S4	AUGUSTUS	start_codon	5265404	5265406	.	-	0	transcript_id "Ledus.S4G071200.t1"; gene_id "Ledus.S4G071200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2518.t1 is derived from g9381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18558637	18562810	.	-	.	Ledus.S2G240000
Ledus.S2	AUGUSTUS	transcript	18558637	18562810	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	stop_codon	18558634	18558636	.	-	0	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18558637	18558677	0.3	-	2	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18558637	18558677	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18558678	18558772	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18558773	18558928	1	-	2	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18558773	18558928	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18558929	18559067	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18559068	18559115	1	-	2	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18559068	18559115	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18559116	18559205	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18559206	18559315	1	-	1	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18559206	18559315	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18559316	18559409	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18559410	18559486	1	-	0	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18559410	18559486	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18559487	18559571	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18559572	18559693	1	-	2	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18559572	18559693	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18559694	18559806	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18559807	18559888	0.88	-	0	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18559807	18559888	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18559889	18559972	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18559973	18560039	0.99	-	1	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18559973	18560039	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18560040	18560160	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18560161	18560233	0.93	-	2	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18560161	18560233	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18560234	18560369	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18560370	18560486	0.94	-	2	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18560370	18560486	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18560487	18560594	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18560595	18560686	0.71	-	1	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18560595	18560686	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18560687	18560796	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18560797	18560914	0.45	-	2	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18560797	18560914	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18560915	18560978	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18560979	18561076	0.57	-	1	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18560979	18561076	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18561077	18561201	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18561202	18561301	0.57	-	2	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18561202	18561301	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18561302	18561447	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18561448	18561622	1	-	0	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18561448	18561622	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18561623	18561778	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18561779	18561842	0.98	-	1	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18561779	18561842	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18561843	18561963	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18561964	18562102	0.94	-	2	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18561964	18562102	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18562103	18562229	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18562230	18562329	0.99	-	0	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18562230	18562329	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18562330	18562410	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18562411	18562513	0.85	-	1	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18562411	18562513	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	intron	18562514	18562646	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	CDS	18562647	18562810	0.54	-	0	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	exon	18562647	18562810	.	-	.	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
Ledus.S2	AUGUSTUS	start_codon	18562808	18562810	.	-	0	transcript_id "Ledus.S2G240000.t1"; gene_id "Ledus.S2G240000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3851.t1 is derived from g1287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13170870	13172625	.	+	.	Ledus.S1G127200
Ledus.S1	AUGUSTUS	transcript	13170870	13172625	.	+	.	transcript_id "Ledus.S1G127200.t1"; gene_id "Ledus.S1G127200"
Ledus.S1	AUGUSTUS	start_codon	13170870	13170872	.	+	0	transcript_id "Ledus.S1G127200.t1"; gene_id "Ledus.S1G127200"
Ledus.S1	AUGUSTUS	CDS	13170870	13171048	0.58	+	0	transcript_id "Ledus.S1G127200.t1"; gene_id "Ledus.S1G127200"
Ledus.S1	AUGUSTUS	exon	13170870	13171048	.	+	.	transcript_id "Ledus.S1G127200.t1"; gene_id "Ledus.S1G127200"
Ledus.S1	AUGUSTUS	intron	13171049	13171124	.	+	.	transcript_id "Ledus.S1G127200.t1"; gene_id "Ledus.S1G127200"
Ledus.S1	AUGUSTUS	CDS	13171125	13172153	0.94	+	1	transcript_id "Ledus.S1G127200.t1"; gene_id "Ledus.S1G127200"
Ledus.S1	AUGUSTUS	exon	13171125	13172153	.	+	.	transcript_id "Ledus.S1G127200.t1"; gene_id "Ledus.S1G127200"
Ledus.S1	AUGUSTUS	intron	13172154	13172231	.	+	.	transcript_id "Ledus.S1G127200.t1"; gene_id "Ledus.S1G127200"
Ledus.S1	AUGUSTUS	CDS	13172232	13172625	0.56	+	1	transcript_id "Ledus.S1G127200.t1"; gene_id "Ledus.S1G127200"
Ledus.S1	AUGUSTUS	exon	13172232	13172625	.	+	.	transcript_id "Ledus.S1G127200.t1"; gene_id "Ledus.S1G127200"
Ledus.S1	AUGUSTUS	stop_codon	13172626	13172628	.	+	0	transcript_id "Ledus.S1G127200.t1"; gene_id "Ledus.S1G127200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1347.t1 is derived from g8208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9371896	9373164	.	+	.	Ledus.S2G122900
Ledus.S2	AUGUSTUS	transcript	9371896	9373164	.	+	.	transcript_id "Ledus.S2G122900.t1"; gene_id "Ledus.S2G122900"
Ledus.S2	AUGUSTUS	start_codon	9371896	9371898	.	+	0	transcript_id "Ledus.S2G122900.t1"; gene_id "Ledus.S2G122900"
Ledus.S2	AUGUSTUS	CDS	9371896	9372254	0.4	+	0	transcript_id "Ledus.S2G122900.t1"; gene_id "Ledus.S2G122900"
Ledus.S2	AUGUSTUS	exon	9371896	9372254	.	+	.	transcript_id "Ledus.S2G122900.t1"; gene_id "Ledus.S2G122900"
Ledus.S2	AUGUSTUS	intron	9372255	9372962	.	+	.	transcript_id "Ledus.S2G122900.t1"; gene_id "Ledus.S2G122900"
Ledus.S2	AUGUSTUS	CDS	9372963	9373164	0.03	+	1	transcript_id "Ledus.S2G122900.t1"; gene_id "Ledus.S2G122900"
Ledus.S2	AUGUSTUS	exon	9372963	9373164	.	+	.	transcript_id "Ledus.S2G122900.t1"; gene_id "Ledus.S2G122900"
Ledus.S2	AUGUSTUS	stop_codon	9373165	9373167	.	+	0	transcript_id "Ledus.S2G122900.t1"; gene_id "Ledus.S2G122900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7576.t1 is derived from g12247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4128014	4130328	.	-	.	Ledus.S5G035400
Ledus.S5	AUGUSTUS	transcript	4128014	4130328	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	stop_codon	4128011	4128013	.	-	0	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	CDS	4128014	4128082	1	-	0	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	exon	4128014	4128082	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	intron	4128083	4128346	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	CDS	4128347	4128415	1	-	0	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	exon	4128347	4128415	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	intron	4128416	4129092	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	CDS	4129093	4129216	0.99	-	1	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	exon	4129093	4129216	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	intron	4129217	4129301	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	CDS	4129302	4129512	0.96	-	2	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	exon	4129302	4129512	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	intron	4129513	4129594	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	CDS	4129595	4129712	1	-	0	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	exon	4129595	4129712	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	intron	4129713	4129855	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	CDS	4129856	4130007	1	-	2	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	exon	4129856	4130007	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	intron	4130008	4130234	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	CDS	4130235	4130328	0.96	-	0	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	exon	4130235	4130328	.	-	.	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
Ledus.S5	AUGUSTUS	start_codon	4130326	4130328	.	-	0	transcript_id "Ledus.S5G035400.t1"; gene_id "Ledus.S5G035400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12623.t1 is derived from g6245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13262750	13264453	.	+	.	Ledus.S4G177900
Ledus.S4	AUGUSTUS	transcript	13262750	13264453	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	start_codon	13262750	13262752	.	+	0	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	CDS	13262750	13262832	0.99	+	0	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	exon	13262750	13262832	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	intron	13262833	13263015	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	CDS	13263016	13263103	1	+	1	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	exon	13263016	13263103	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	intron	13263104	13263221	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	CDS	13263222	13263293	0.98	+	0	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	exon	13263222	13263293	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	intron	13263294	13263471	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	CDS	13263472	13263522	1	+	0	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	exon	13263472	13263522	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	intron	13263523	13263664	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	CDS	13263665	13263709	1	+	0	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	exon	13263665	13263709	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	intron	13263710	13263803	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	CDS	13263804	13263896	1	+	0	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	exon	13263804	13263896	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	intron	13263897	13264008	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	CDS	13264009	13264110	1	+	0	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	exon	13264009	13264110	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	intron	13264111	13264268	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	CDS	13264269	13264290	0.53	+	0	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	exon	13264269	13264290	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	intron	13264291	13264442	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	CDS	13264443	13264453	0.53	+	2	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	exon	13264443	13264453	.	+	.	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
Ledus.S4	AUGUSTUS	stop_codon	13264454	13264456	.	+	0	transcript_id "Ledus.S4G177900.t1"; gene_id "Ledus.S4G177900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13124.t1 is derived from g6934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6462134	6462532	.	+	.	Ledus.S6G018600
Ledus.S6	AUGUSTUS	transcript	6462134	6462532	.	+	.	transcript_id "Ledus.S6G018600.t1"; gene_id "Ledus.S6G018600"
Ledus.S6	AUGUSTUS	start_codon	6462134	6462136	.	+	0	transcript_id "Ledus.S6G018600.t1"; gene_id "Ledus.S6G018600"
Ledus.S6	AUGUSTUS	CDS	6462134	6462532	0.6	+	0	transcript_id "Ledus.S6G018600.t1"; gene_id "Ledus.S6G018600"
Ledus.S6	AUGUSTUS	exon	6462134	6462532	.	+	.	transcript_id "Ledus.S6G018600.t1"; gene_id "Ledus.S6G018600"
Ledus.S6	AUGUSTUS	stop_codon	6462533	6462535	.	+	0	transcript_id "Ledus.S6G018600.t1"; gene_id "Ledus.S6G018600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5857.t1 is derived from g3299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27341508	27343247	.	-	.	Ledus.S1G327800
Ledus.S1	AUGUSTUS	transcript	27341508	27343247	.	-	.	transcript_id "Ledus.S1G327800.t1"; gene_id "Ledus.S1G327800"
Ledus.S1	AUGUSTUS	stop_codon	27341505	27341507	.	-	0	transcript_id "Ledus.S1G327800.t1"; gene_id "Ledus.S1G327800"
Ledus.S1	AUGUSTUS	CDS	27341508	27343247	1	-	0	transcript_id "Ledus.S1G327800.t1"; gene_id "Ledus.S1G327800"
Ledus.S1	AUGUSTUS	exon	27341508	27343247	.	-	.	transcript_id "Ledus.S1G327800.t1"; gene_id "Ledus.S1G327800"
Ledus.S1	AUGUSTUS	start_codon	27343245	27343247	.	-	0	transcript_id "Ledus.S1G327800.t1"; gene_id "Ledus.S1G327800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8994.t1 is derived from g10024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3740774	3741420	.	+	.	Ledus.S3G047100
Ledus.S3	AUGUSTUS	transcript	3740774	3741420	.	+	.	transcript_id "Ledus.S3G047100.t1"; gene_id "Ledus.S3G047100"
Ledus.S3	AUGUSTUS	start_codon	3740774	3740776	.	+	0	transcript_id "Ledus.S3G047100.t1"; gene_id "Ledus.S3G047100"
Ledus.S3	AUGUSTUS	CDS	3740774	3741004	0.85	+	0	transcript_id "Ledus.S3G047100.t1"; gene_id "Ledus.S3G047100"
Ledus.S3	AUGUSTUS	exon	3740774	3741004	.	+	.	transcript_id "Ledus.S3G047100.t1"; gene_id "Ledus.S3G047100"
Ledus.S3	AUGUSTUS	intron	3741005	3741111	.	+	.	transcript_id "Ledus.S3G047100.t1"; gene_id "Ledus.S3G047100"
Ledus.S3	AUGUSTUS	CDS	3741112	3741257	1	+	0	transcript_id "Ledus.S3G047100.t1"; gene_id "Ledus.S3G047100"
Ledus.S3	AUGUSTUS	exon	3741112	3741257	.	+	.	transcript_id "Ledus.S3G047100.t1"; gene_id "Ledus.S3G047100"
Ledus.S3	AUGUSTUS	intron	3741258	3741335	.	+	.	transcript_id "Ledus.S3G047100.t1"; gene_id "Ledus.S3G047100"
Ledus.S3	AUGUSTUS	CDS	3741336	3741420	1	+	1	transcript_id "Ledus.S3G047100.t1"; gene_id "Ledus.S3G047100"
Ledus.S3	AUGUSTUS	exon	3741336	3741420	.	+	.	transcript_id "Ledus.S3G047100.t1"; gene_id "Ledus.S3G047100"
Ledus.S3	AUGUSTUS	stop_codon	3741421	3741423	.	+	0	transcript_id "Ledus.S3G047100.t1"; gene_id "Ledus.S3G047100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12803.t1 is derived from g6425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14739076	14739273	.	+	.	Ledus.S4G195900
Ledus.S4	AUGUSTUS	transcript	14739076	14739273	.	+	.	transcript_id "Ledus.S4G195900.t1"; gene_id "Ledus.S4G195900"
Ledus.S4	AUGUSTUS	start_codon	14739076	14739078	.	+	0	transcript_id "Ledus.S4G195900.t1"; gene_id "Ledus.S4G195900"
Ledus.S4	AUGUSTUS	CDS	14739076	14739273	0.94	+	0	transcript_id "Ledus.S4G195900.t1"; gene_id "Ledus.S4G195900"
Ledus.S4	AUGUSTUS	exon	14739076	14739273	.	+	.	transcript_id "Ledus.S4G195900.t1"; gene_id "Ledus.S4G195900"
Ledus.S4	AUGUSTUS	stop_codon	14739274	14739276	.	+	0	transcript_id "Ledus.S4G195900.t1"; gene_id "Ledus.S4G195900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4099.t1 is derived from g1535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14678236	14680846	.	+	.	Ledus.S1G152000
Ledus.S1	AUGUSTUS	transcript	14678236	14680846	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	start_codon	14678236	14678238	.	+	0	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	CDS	14678236	14678272	0.62	+	0	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	exon	14678236	14678272	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	intron	14678273	14678586	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	CDS	14678587	14678808	0.74	+	2	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	exon	14678587	14678808	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	intron	14678809	14679257	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	CDS	14679258	14679393	1	+	2	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	exon	14679258	14679393	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	intron	14679394	14679503	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	CDS	14679504	14679585	1	+	1	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	exon	14679504	14679585	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	intron	14679586	14679751	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	CDS	14679752	14679927	1	+	0	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	exon	14679752	14679927	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	intron	14679928	14680078	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	CDS	14680079	14680216	1	+	1	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	exon	14680079	14680216	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	intron	14680217	14680341	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	CDS	14680342	14680478	1	+	1	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	exon	14680342	14680478	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	intron	14680479	14680574	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	CDS	14680575	14680846	1	+	2	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	exon	14680575	14680846	.	+	.	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
Ledus.S1	AUGUSTUS	stop_codon	14680847	14680849	.	+	0	transcript_id "Ledus.S1G152000.t1"; gene_id "Ledus.S1G152000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6323.t1 is derived from g3766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30494173	30495176	.	+	.	Ledus.S1G374400
Ledus.S1	AUGUSTUS	transcript	30494173	30495176	.	+	.	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	start_codon	30494173	30494175	.	+	0	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	CDS	30494173	30494220	0.97	+	0	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	exon	30494173	30494220	.	+	.	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	intron	30494221	30494335	.	+	.	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	CDS	30494336	30494394	0.97	+	0	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	exon	30494336	30494394	.	+	.	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	intron	30494395	30494483	.	+	.	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	CDS	30494484	30494759	1	+	1	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	exon	30494484	30494759	.	+	.	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	intron	30494760	30494847	.	+	.	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	CDS	30494848	30494987	1	+	1	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	exon	30494848	30494987	.	+	.	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	intron	30494988	30495063	.	+	.	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	CDS	30495064	30495176	1	+	2	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	exon	30495064	30495176	.	+	.	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
Ledus.S1	AUGUSTUS	stop_codon	30495177	30495179	.	+	0	transcript_id "Ledus.S1G374400.t1"; gene_id "Ledus.S1G374400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5747.t1 is derived from g3187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26449218	26449454	.	-	.	Ledus.S1G316800
Ledus.S1	AUGUSTUS	transcript	26449218	26449454	.	-	.	transcript_id "Ledus.S1G316800.t1"; gene_id "Ledus.S1G316800"
Ledus.S1	AUGUSTUS	stop_codon	26449215	26449217	.	-	0	transcript_id "Ledus.S1G316800.t1"; gene_id "Ledus.S1G316800"
Ledus.S1	AUGUSTUS	CDS	26449218	26449454	0.95	-	0	transcript_id "Ledus.S1G316800.t1"; gene_id "Ledus.S1G316800"
Ledus.S1	AUGUSTUS	exon	26449218	26449454	.	-	.	transcript_id "Ledus.S1G316800.t1"; gene_id "Ledus.S1G316800"
Ledus.S1	AUGUSTUS	start_codon	26449452	26449454	.	-	0	transcript_id "Ledus.S1G316800.t1"; gene_id "Ledus.S1G316800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12310.t1 is derived from g5931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11162421	11163158	.	-	.	Ledus.S4G146600
Ledus.S4	AUGUSTUS	transcript	11162421	11163158	.	-	.	transcript_id "Ledus.S4G146600.t1"; gene_id "Ledus.S4G146600"
Ledus.S4	AUGUSTUS	stop_codon	11162418	11162420	.	-	0	transcript_id "Ledus.S4G146600.t1"; gene_id "Ledus.S4G146600"
Ledus.S4	AUGUSTUS	CDS	11162421	11163158	0.76	-	0	transcript_id "Ledus.S4G146600.t1"; gene_id "Ledus.S4G146600"
Ledus.S4	AUGUSTUS	exon	11162421	11163158	.	-	.	transcript_id "Ledus.S4G146600.t1"; gene_id "Ledus.S4G146600"
Ledus.S4	AUGUSTUS	start_codon	11163156	11163158	.	-	0	transcript_id "Ledus.S4G146600.t1"; gene_id "Ledus.S4G146600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1921.t1 is derived from g8784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13415416	13416120	.	+	.	Ledus.S2G180300
Ledus.S2	AUGUSTUS	transcript	13415416	13416120	.	+	.	transcript_id "Ledus.S2G180300.t1"; gene_id "Ledus.S2G180300"
Ledus.S2	AUGUSTUS	start_codon	13415416	13415418	.	+	0	transcript_id "Ledus.S2G180300.t1"; gene_id "Ledus.S2G180300"
Ledus.S2	AUGUSTUS	CDS	13415416	13415765	0.51	+	0	transcript_id "Ledus.S2G180300.t1"; gene_id "Ledus.S2G180300"
Ledus.S2	AUGUSTUS	exon	13415416	13415765	.	+	.	transcript_id "Ledus.S2G180300.t1"; gene_id "Ledus.S2G180300"
Ledus.S2	AUGUSTUS	intron	13415766	13415858	.	+	.	transcript_id "Ledus.S2G180300.t1"; gene_id "Ledus.S2G180300"
Ledus.S2	AUGUSTUS	CDS	13415859	13416120	0.77	+	1	transcript_id "Ledus.S2G180300.t1"; gene_id "Ledus.S2G180300"
Ledus.S2	AUGUSTUS	exon	13415859	13416120	.	+	.	transcript_id "Ledus.S2G180300.t1"; gene_id "Ledus.S2G180300"
Ledus.S2	AUGUSTUS	stop_codon	13416121	13416123	.	+	0	transcript_id "Ledus.S2G180300.t1"; gene_id "Ledus.S2G180300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5593.t1 is derived from g3032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25303725	25308389	.	-	.	Ledus.S1G301400
Ledus.S1	AUGUSTUS	transcript	25303725	25308389	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	stop_codon	25303722	25303724	.	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25303725	25303799	1	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25303725	25303799	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25303800	25303953	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25303954	25304245	1	-	1	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25303954	25304245	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25304246	25304330	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25304331	25304512	1	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25304331	25304512	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25304513	25304690	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25304691	25305593	1	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25304691	25305593	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25305594	25305852	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25305853	25305939	1	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25305853	25305939	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25305940	25306088	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25306089	25306172	1	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25306089	25306172	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25306173	25306280	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25306281	25306334	1	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25306281	25306334	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25306335	25306559	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25306560	25306694	1	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25306560	25306694	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25306695	25306875	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25306876	25306971	1	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25306876	25306971	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25306972	25307095	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25307096	25307359	0.99	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25307096	25307359	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25307360	25307494	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25307495	25307584	1	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25307495	25307584	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25307585	25307693	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25307694	25307753	0.99	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25307694	25307753	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25307754	25307851	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25307852	25307918	1	-	1	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25307852	25307918	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25307919	25308106	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25308107	25308198	1	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25308107	25308198	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	intron	25308199	25308287	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	CDS	25308288	25308389	0.97	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	exon	25308288	25308389	.	-	.	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
Ledus.S1	AUGUSTUS	start_codon	25308387	25308389	.	-	0	transcript_id "Ledus.S1G301400.t1"; gene_id "Ledus.S1G301400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6289.t1 is derived from g3732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30149979	30151415	.	+	.	Ledus.S1G371000
Ledus.S1	AUGUSTUS	transcript	30149979	30151415	.	+	.	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	start_codon	30149979	30149981	.	+	0	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	CDS	30149979	30150222	0.99	+	0	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	exon	30149979	30150222	.	+	.	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	intron	30150223	30150295	.	+	.	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	CDS	30150296	30150429	1	+	2	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	exon	30150296	30150429	.	+	.	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	intron	30150430	30150520	.	+	.	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	CDS	30150521	30150769	1	+	0	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	exon	30150521	30150769	.	+	.	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	intron	30150770	30150851	.	+	.	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	CDS	30150852	30151415	1	+	0	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	exon	30150852	30151415	.	+	.	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
Ledus.S1	AUGUSTUS	stop_codon	30151416	30151418	.	+	0	transcript_id "Ledus.S1G371000.t1"; gene_id "Ledus.S1G371000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7001.t1 is derived from g6532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	736957	740366	.	+	.	Ledus.C7G006200
Ledus.C7	AUGUSTUS	transcript	736957	740366	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	start_codon	736957	736959	.	+	0	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	736957	736962	0.54	+	0	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	736957	736962	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	736963	737164	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	737165	737185	0.99	+	0	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	737165	737185	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	737186	737281	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	737282	737417	1	+	0	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	737282	737417	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	737418	737515	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	737516	737592	1	+	2	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	737516	737592	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	737593	737679	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	737680	737720	1	+	0	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	737680	737720	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	737721	737839	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	737840	737914	1	+	1	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	737840	737914	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	737915	738153	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	738154	738340	1	+	1	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	738154	738340	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	738341	738660	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	738661	738691	1	+	0	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	738661	738691	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	738692	738937	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	738938	738996	1	+	2	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	738938	738996	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	738997	739240	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	739241	739314	1	+	0	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	739241	739314	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	739315	739624	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	739625	739711	1	+	1	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	739625	739711	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	739712	739902	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	739903	739964	1	+	1	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	739903	739964	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	739965	740161	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	740162	740190	1	+	2	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	740162	740190	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	intron	740191	740276	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	CDS	740277	740366	1	+	0	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	exon	740277	740366	.	+	.	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
Ledus.C7	AUGUSTUS	stop_codon	740367	740369	.	+	0	transcript_id "Ledus.C7G006200.t1"; gene_id "Ledus.C7G006200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1947.t1 is derived from g8810.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13649674	13651033	.	+	.	Ledus.S2G182900
Ledus.S2	AUGUSTUS	transcript	13649674	13651026	.	+	.	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	start_codon	13649674	13649676	.	+	0	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	CDS	13649674	13649814	0.8	+	0	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	exon	13649674	13649814	.	+	.	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	intron	13649815	13649949	.	+	.	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	CDS	13649950	13649977	0.96	+	0	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	exon	13649950	13649977	.	+	.	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	intron	13649978	13650184	.	+	.	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	CDS	13650185	13650212	1	+	2	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	exon	13650185	13650212	.	+	.	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	intron	13650213	13650386	.	+	.	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	CDS	13650387	13650520	1	+	1	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	exon	13650387	13650520	.	+	.	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	intron	13650521	13650804	.	+	.	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	CDS	13650805	13650885	0.95	+	2	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	exon	13650805	13650885	.	+	.	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	intron	13650886	13651012	.	+	.	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	CDS	13651013	13651026	0.95	+	2	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	exon	13651013	13651026	.	+	.	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	stop_codon	13651027	13651029	.	+	0	transcript_id "Ledus.S2G182900.t1"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	transcript	13649674	13651033	.	+	.	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	start_codon	13649674	13649676	.	+	0	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	CDS	13649674	13649814	0.18	+	0	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	exon	13649674	13649814	.	+	.	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	intron	13649815	13649949	.	+	.	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	CDS	13649950	13649977	0.22	+	0	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	exon	13649950	13649977	.	+	.	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	intron	13649978	13650184	.	+	.	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	CDS	13650185	13650212	0.26	+	2	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	exon	13650185	13650212	.	+	.	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	intron	13650213	13650386	.	+	.	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	CDS	13650387	13650520	0.26	+	1	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	exon	13650387	13650520	.	+	.	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	intron	13650521	13650790	.	+	.	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	CDS	13650791	13650885	0.26	+	2	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	exon	13650791	13650885	.	+	.	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	intron	13650886	13651012	.	+	.	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	CDS	13651013	13651033	0.57	+	0	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	exon	13651013	13651033	.	+	.	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
Ledus.S2	AUGUSTUS	stop_codon	13651034	13651036	.	+	0	transcript_id "Ledus.S2G182900.t2"; gene_id "Ledus.S2G182900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7480.t1 is derived from g12151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3071135	3071883	.	-	.	Ledus.S5G025800
Ledus.S5	AUGUSTUS	transcript	3071135	3071883	.	-	.	transcript_id "Ledus.S5G025800.t1"; gene_id "Ledus.S5G025800"
Ledus.S5	AUGUSTUS	stop_codon	3071132	3071134	.	-	0	transcript_id "Ledus.S5G025800.t1"; gene_id "Ledus.S5G025800"
Ledus.S5	AUGUSTUS	CDS	3071135	3071755	0.93	-	0	transcript_id "Ledus.S5G025800.t1"; gene_id "Ledus.S5G025800"
Ledus.S5	AUGUSTUS	exon	3071135	3071755	.	-	.	transcript_id "Ledus.S5G025800.t1"; gene_id "Ledus.S5G025800"
Ledus.S5	AUGUSTUS	intron	3071756	3071832	.	-	.	transcript_id "Ledus.S5G025800.t1"; gene_id "Ledus.S5G025800"
Ledus.S5	AUGUSTUS	CDS	3071833	3071883	0.69	-	0	transcript_id "Ledus.S5G025800.t1"; gene_id "Ledus.S5G025800"
Ledus.S5	AUGUSTUS	exon	3071833	3071883	.	-	.	transcript_id "Ledus.S5G025800.t1"; gene_id "Ledus.S5G025800"
Ledus.S5	AUGUSTUS	start_codon	3071881	3071883	.	-	0	transcript_id "Ledus.S5G025800.t1"; gene_id "Ledus.S5G025800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg269.t1 is derived from g7130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1308719	1309439	.	-	.	Ledus.S2G015100
Ledus.S2	AUGUSTUS	transcript	1308719	1309439	.	-	.	transcript_id "Ledus.S2G015100.t1"; gene_id "Ledus.S2G015100"
Ledus.S2	AUGUSTUS	stop_codon	1308716	1308718	.	-	0	transcript_id "Ledus.S2G015100.t1"; gene_id "Ledus.S2G015100"
Ledus.S2	AUGUSTUS	CDS	1308719	1308842	0.65	-	1	transcript_id "Ledus.S2G015100.t1"; gene_id "Ledus.S2G015100"
Ledus.S2	AUGUSTUS	exon	1308719	1308842	.	-	.	transcript_id "Ledus.S2G015100.t1"; gene_id "Ledus.S2G015100"
Ledus.S2	AUGUSTUS	intron	1308843	1309092	.	-	.	transcript_id "Ledus.S2G015100.t1"; gene_id "Ledus.S2G015100"
Ledus.S2	AUGUSTUS	CDS	1309093	1309439	0.64	-	0	transcript_id "Ledus.S2G015100.t1"; gene_id "Ledus.S2G015100"
Ledus.S2	AUGUSTUS	exon	1309093	1309439	.	-	.	transcript_id "Ledus.S2G015100.t1"; gene_id "Ledus.S2G015100"
Ledus.S2	AUGUSTUS	start_codon	1309437	1309439	.	-	0	transcript_id "Ledus.S2G015100.t1"; gene_id "Ledus.S2G015100"
# This transcript jg1909.t2 is derived from g8772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1909.t3 is derived from g8772.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1910.t1 is derived from g8773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13350215	13352742	.	+	.	Ledus.S2G179200
Ledus.S2	AUGUSTUS	transcript	13350215	13352742	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	start_codon	13350215	13350217	.	+	0	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	CDS	13350215	13350477	0.68	+	0	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	exon	13350215	13350477	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	intron	13350478	13350644	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	CDS	13350645	13350733	1	+	1	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	exon	13350645	13350733	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	intron	13350734	13350831	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	CDS	13350832	13350930	1	+	2	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	exon	13350832	13350930	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	intron	13350931	13351004	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	CDS	13351005	13351097	0.99	+	2	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	exon	13351005	13351097	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	intron	13351098	13351377	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	CDS	13351378	13351484	0.86	+	2	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	exon	13351378	13351484	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	intron	13351485	13351623	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	CDS	13351624	13352292	0.34	+	0	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	exon	13351624	13352292	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	intron	13352293	13352667	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	CDS	13352668	13352742	0.71	+	0	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	exon	13352668	13352742	.	+	.	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
Ledus.S2	AUGUSTUS	stop_codon	13352743	13352745	.	+	0	transcript_id "Ledus.S2G179200.t1"; gene_id "Ledus.S2G179200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7606.t1 is derived from g12277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4343306	4344294	.	-	.	Ledus.S5G038400
Ledus.S5	AUGUSTUS	transcript	4343306	4344294	.	-	.	transcript_id "Ledus.S5G038400.t1"; gene_id "Ledus.S5G038400"
Ledus.S5	AUGUSTUS	stop_codon	4343303	4343305	.	-	0	transcript_id "Ledus.S5G038400.t1"; gene_id "Ledus.S5G038400"
Ledus.S5	AUGUSTUS	CDS	4343306	4343642	0.41	-	1	transcript_id "Ledus.S5G038400.t1"; gene_id "Ledus.S5G038400"
Ledus.S5	AUGUSTUS	exon	4343306	4343642	.	-	.	transcript_id "Ledus.S5G038400.t1"; gene_id "Ledus.S5G038400"
Ledus.S5	AUGUSTUS	intron	4343643	4343974	.	-	.	transcript_id "Ledus.S5G038400.t1"; gene_id "Ledus.S5G038400"
Ledus.S5	AUGUSTUS	CDS	4343975	4344294	0.84	-	0	transcript_id "Ledus.S5G038400.t1"; gene_id "Ledus.S5G038400"
Ledus.S5	AUGUSTUS	exon	4343975	4344294	.	-	.	transcript_id "Ledus.S5G038400.t1"; gene_id "Ledus.S5G038400"
Ledus.S5	AUGUSTUS	start_codon	4344292	4344294	.	-	0	transcript_id "Ledus.S5G038400.t1"; gene_id "Ledus.S5G038400"
# This transcript jg1212.t2 is derived from g8073.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1212.t3 is derived from g8073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1213.t1 is derived from g8074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8650195	8652203	.	-	.	Ledus.S2G109500
Ledus.S2	AUGUSTUS	transcript	8650195	8652203	.	-	.	transcript_id "Ledus.S2G109500.t1"; gene_id "Ledus.S2G109500"
Ledus.S2	AUGUSTUS	stop_codon	8650192	8650194	.	-	0	transcript_id "Ledus.S2G109500.t1"; gene_id "Ledus.S2G109500"
Ledus.S2	AUGUSTUS	CDS	8650195	8651514	0.98	-	0	transcript_id "Ledus.S2G109500.t1"; gene_id "Ledus.S2G109500"
Ledus.S2	AUGUSTUS	exon	8650195	8651514	.	-	.	transcript_id "Ledus.S2G109500.t1"; gene_id "Ledus.S2G109500"
Ledus.S2	AUGUSTUS	intron	8651515	8651681	.	-	.	transcript_id "Ledus.S2G109500.t1"; gene_id "Ledus.S2G109500"
Ledus.S2	AUGUSTUS	CDS	8651682	8651756	1	-	0	transcript_id "Ledus.S2G109500.t1"; gene_id "Ledus.S2G109500"
Ledus.S2	AUGUSTUS	exon	8651682	8651756	.	-	.	transcript_id "Ledus.S2G109500.t1"; gene_id "Ledus.S2G109500"
Ledus.S2	AUGUSTUS	intron	8651757	8651843	.	-	.	transcript_id "Ledus.S2G109500.t1"; gene_id "Ledus.S2G109500"
Ledus.S2	AUGUSTUS	CDS	8651844	8652203	0.96	-	0	transcript_id "Ledus.S2G109500.t1"; gene_id "Ledus.S2G109500"
Ledus.S2	AUGUSTUS	exon	8651844	8652203	.	-	.	transcript_id "Ledus.S2G109500.t1"; gene_id "Ledus.S2G109500"
Ledus.S2	AUGUSTUS	start_codon	8652201	8652203	.	-	0	transcript_id "Ledus.S2G109500.t1"; gene_id "Ledus.S2G109500"
# This transcript jg5863.t2 is derived from g3305.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5864.t1 is derived from g3306.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27439253	27439816	.	-	.	Ledus.S1G328500
Ledus.S1	AUGUSTUS	transcript	27439253	27439816	.	-	.	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	stop_codon	27439250	27439252	.	-	0	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	CDS	27439253	27439296	0.79	-	2	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	exon	27439253	27439296	.	-	.	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	intron	27439297	27439466	.	-	.	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	CDS	27439467	27439525	0.73	-	1	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	exon	27439467	27439525	.	-	.	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	intron	27439526	27439617	.	-	.	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	CDS	27439618	27439708	0.97	-	2	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	exon	27439618	27439708	.	-	.	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	intron	27439709	27439800	.	-	.	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	CDS	27439801	27439816	1	-	0	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	exon	27439801	27439816	.	-	.	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
Ledus.S1	AUGUSTUS	start_codon	27439814	27439816	.	-	0	transcript_id "Ledus.S1G328500.t1"; gene_id "Ledus.S1G328500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7410.t1 is derived from g12081.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2135502	2136804	.	+	.	Ledus.S5G018800
Ledus.S5	AUGUSTUS	transcript	2135502	2136804	.	+	.	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	start_codon	2135502	2135504	.	+	0	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	CDS	2135502	2135792	0.5	+	0	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	exon	2135502	2135792	.	+	.	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	intron	2135793	2135859	.	+	.	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	CDS	2135860	2135986	1	+	0	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	exon	2135860	2135986	.	+	.	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	intron	2135987	2136089	.	+	.	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	CDS	2136090	2136365	0.96	+	2	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	exon	2136090	2136365	.	+	.	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	intron	2136366	2136454	.	+	.	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	CDS	2136455	2136804	1	+	2	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	exon	2136455	2136804	.	+	.	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	stop_codon	2136805	2136807	.	+	0	transcript_id "Ledus.S5G018800.t1"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	transcript	2135502	2136073	.	+	.	transcript_id "Ledus.S5G018800.t2"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	start_codon	2135502	2135504	.	+	0	transcript_id "Ledus.S5G018800.t2"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	CDS	2135502	2135792	0.56	+	0	transcript_id "Ledus.S5G018800.t2"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	exon	2135502	2135792	.	+	.	transcript_id "Ledus.S5G018800.t2"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	intron	2135793	2135859	.	+	.	transcript_id "Ledus.S5G018800.t2"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	CDS	2135860	2135986	1	+	0	transcript_id "Ledus.S5G018800.t2"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	exon	2135860	2135986	.	+	.	transcript_id "Ledus.S5G018800.t2"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	intron	2135987	2136071	.	+	.	transcript_id "Ledus.S5G018800.t2"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	CDS	2136072	2136073	0.98	+	2	transcript_id "Ledus.S5G018800.t2"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	exon	2136072	2136073	.	+	.	transcript_id "Ledus.S5G018800.t2"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	stop_codon	2136074	2136076	.	+	0	transcript_id "Ledus.S5G018800.t2"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	transcript	2136113	2136804	.	+	.	transcript_id "Ledus.S5G018800.t3"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	start_codon	2136113	2136115	.	+	0	transcript_id "Ledus.S5G018800.t3"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	CDS	2136113	2136365	0.43	+	0	transcript_id "Ledus.S5G018800.t3"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	exon	2136113	2136365	.	+	.	transcript_id "Ledus.S5G018800.t3"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	intron	2136366	2136454	.	+	.	transcript_id "Ledus.S5G018800.t3"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	CDS	2136455	2136804	0.98	+	2	transcript_id "Ledus.S5G018800.t3"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	exon	2136455	2136804	.	+	.	transcript_id "Ledus.S5G018800.t3"; gene_id "Ledus.S5G018800"
Ledus.S5	AUGUSTUS	stop_codon	2136805	2136807	.	+	0	transcript_id "Ledus.S5G018800.t3"; gene_id "Ledus.S5G018800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1173.t1 is derived from g8034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8144729	8146785	.	+	.	Ledus.S2G105500
Ledus.S2	AUGUSTUS	transcript	8144729	8146785	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	start_codon	8144729	8144731	.	+	0	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	CDS	8144729	8144935	0.72	+	0	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	exon	8144729	8144935	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	intron	8144936	8145026	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	CDS	8145027	8145215	1	+	0	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	exon	8145027	8145215	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	intron	8145216	8145312	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	CDS	8145313	8145425	1	+	0	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	exon	8145313	8145425	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	intron	8145426	8145525	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	CDS	8145526	8145709	1	+	1	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	exon	8145526	8145709	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	intron	8145710	8145791	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	CDS	8145792	8145889	1	+	0	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	exon	8145792	8145889	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	intron	8145890	8145978	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	CDS	8145979	8146186	1	+	1	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	exon	8145979	8146186	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	intron	8146187	8146266	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	CDS	8146267	8146527	1	+	0	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	exon	8146267	8146527	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	intron	8146528	8146599	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	CDS	8146600	8146785	1	+	0	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	exon	8146600	8146785	.	+	.	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
Ledus.S2	AUGUSTUS	stop_codon	8146786	8146788	.	+	0	transcript_id "Ledus.S2G105500.t1"; gene_id "Ledus.S2G105500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10838.t1 is derived from g7.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C22	AUGUSTUS	gene	18299	21085	.	-	.	Ledus.C22G000500
Ledus.C22	AUGUSTUS	transcript	18299	21085	.	-	.	transcript_id "Ledus.C22G000500.t1"; gene_id "Ledus.C22G000500"
Ledus.C22	AUGUSTUS	stop_codon	18296	18298	.	-	0	transcript_id "Ledus.C22G000500.t1"; gene_id "Ledus.C22G000500"
Ledus.C22	AUGUSTUS	CDS	18299	21085	0.46	-	0	transcript_id "Ledus.C22G000500.t1"; gene_id "Ledus.C22G000500"
Ledus.C22	AUGUSTUS	exon	18299	21085	.	-	.	transcript_id "Ledus.C22G000500.t1"; gene_id "Ledus.C22G000500"
Ledus.C22	AUGUSTUS	start_codon	21083	21085	.	-	0	transcript_id "Ledus.C22G000500.t1"; gene_id "Ledus.C22G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg257.t1 is derived from g7118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1193248	1193652	.	+	.	Ledus.S2G013900
Ledus.S2	AUGUSTUS	transcript	1193248	1193652	.	+	.	transcript_id "Ledus.S2G013900.t1"; gene_id "Ledus.S2G013900"
Ledus.S2	AUGUSTUS	start_codon	1193248	1193250	.	+	0	transcript_id "Ledus.S2G013900.t1"; gene_id "Ledus.S2G013900"
Ledus.S2	AUGUSTUS	CDS	1193248	1193652	0.34	+	0	transcript_id "Ledus.S2G013900.t1"; gene_id "Ledus.S2G013900"
Ledus.S2	AUGUSTUS	exon	1193248	1193652	.	+	.	transcript_id "Ledus.S2G013900.t1"; gene_id "Ledus.S2G013900"
Ledus.S2	AUGUSTUS	stop_codon	1193653	1193655	.	+	0	transcript_id "Ledus.S2G013900.t1"; gene_id "Ledus.S2G013900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4958.t1 is derived from g2396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20885680	20886873	.	+	.	Ledus.S1G237900
Ledus.S1	AUGUSTUS	transcript	20885680	20886873	.	+	.	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	start_codon	20885680	20885682	.	+	0	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	CDS	20885680	20885888	0.74	+	0	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	exon	20885680	20885888	.	+	.	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	intron	20885889	20885970	.	+	.	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	CDS	20885971	20886273	0.99	+	1	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	exon	20885971	20886273	.	+	.	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	intron	20886274	20886408	.	+	.	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	CDS	20886409	20886621	1	+	1	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	exon	20886409	20886621	.	+	.	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	intron	20886622	20886722	.	+	.	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	CDS	20886723	20886873	0.96	+	1	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	exon	20886723	20886873	.	+	.	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	stop_codon	20886874	20886876	.	+	0	transcript_id "Ledus.S1G237900.t1"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	transcript	20885680	20886873	.	+	.	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	start_codon	20885680	20885682	.	+	0	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	CDS	20885680	20885888	0.73	+	0	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	exon	20885680	20885888	.	+	.	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	intron	20885889	20885970	.	+	.	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	CDS	20885971	20886079	0.75	+	1	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	exon	20885971	20886079	.	+	.	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	intron	20886080	20886149	.	+	.	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	CDS	20886150	20886226	0.69	+	0	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	exon	20886150	20886226	.	+	.	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	intron	20886227	20886408	.	+	.	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	CDS	20886409	20886621	1	+	1	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	exon	20886409	20886621	.	+	.	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	intron	20886622	20886722	.	+	.	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	CDS	20886723	20886873	0.95	+	1	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	exon	20886723	20886873	.	+	.	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
Ledus.S1	AUGUSTUS	stop_codon	20886874	20886876	.	+	0	transcript_id "Ledus.S1G237900.t2"; gene_id "Ledus.S1G237900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6462.t1 is derived from g3905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31375803	31379767	.	+	.	Ledus.S1G388300
Ledus.S1	AUGUSTUS	transcript	31375803	31379767	.	+	.	transcript_id "Ledus.S1G388300.t1"; gene_id "Ledus.S1G388300"
Ledus.S1	AUGUSTUS	start_codon	31375803	31375805	.	+	0	transcript_id "Ledus.S1G388300.t1"; gene_id "Ledus.S1G388300"
Ledus.S1	AUGUSTUS	CDS	31375803	31379554	0.69	+	0	transcript_id "Ledus.S1G388300.t1"; gene_id "Ledus.S1G388300"
Ledus.S1	AUGUSTUS	exon	31375803	31379554	.	+	.	transcript_id "Ledus.S1G388300.t1"; gene_id "Ledus.S1G388300"
Ledus.S1	AUGUSTUS	intron	31379555	31379760	.	+	.	transcript_id "Ledus.S1G388300.t1"; gene_id "Ledus.S1G388300"
Ledus.S1	AUGUSTUS	CDS	31379761	31379767	0.99	+	1	transcript_id "Ledus.S1G388300.t1"; gene_id "Ledus.S1G388300"
Ledus.S1	AUGUSTUS	exon	31379761	31379767	.	+	.	transcript_id "Ledus.S1G388300.t1"; gene_id "Ledus.S1G388300"
Ledus.S1	AUGUSTUS	stop_codon	31379768	31379770	.	+	0	transcript_id "Ledus.S1G388300.t1"; gene_id "Ledus.S1G388300"
# This transcript jg7492.t2 is derived from g12163.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7493.t1 is derived from g12164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3449823	3450542	.	+	.	Ledus.S5G027100
Ledus.S5	AUGUSTUS	transcript	3449823	3450542	.	+	.	transcript_id "Ledus.S5G027100.t1"; gene_id "Ledus.S5G027100"
Ledus.S5	AUGUSTUS	start_codon	3449823	3449825	.	+	0	transcript_id "Ledus.S5G027100.t1"; gene_id "Ledus.S5G027100"
Ledus.S5	AUGUSTUS	CDS	3449823	3450542	0.98	+	0	transcript_id "Ledus.S5G027100.t1"; gene_id "Ledus.S5G027100"
Ledus.S5	AUGUSTUS	exon	3449823	3450542	.	+	.	transcript_id "Ledus.S5G027100.t1"; gene_id "Ledus.S5G027100"
Ledus.S5	AUGUSTUS	stop_codon	3450543	3450545	.	+	0	transcript_id "Ledus.S5G027100.t1"; gene_id "Ledus.S5G027100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5252.t1 is derived from g2691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22742976	22748802	.	-	.	Ledus.S1G267300
Ledus.S1	AUGUSTUS	transcript	22742976	22748802	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	stop_codon	22742973	22742975	.	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22742976	22743307	1	-	2	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22742976	22743307	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22743308	22743393	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22743394	22743535	1	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22743394	22743535	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22743536	22743666	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22743667	22743804	0.92	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22743667	22743804	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22743805	22744077	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22744078	22744109	0.97	-	2	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22744078	22744109	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22744110	22744197	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22744198	22744348	1	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22744198	22744348	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22744349	22744445	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22744446	22744577	1	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22744446	22744577	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22744578	22744684	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22744685	22744859	1	-	1	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22744685	22744859	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22744860	22744945	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22744946	22745430	1	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22744946	22745430	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22745431	22745583	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22745584	22745663	1	-	2	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22745584	22745663	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22745664	22745781	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22745782	22745836	0.82	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22745782	22745836	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22745837	22746051	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22746052	22746157	1	-	1	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22746052	22746157	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22746158	22746269	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22746270	22746379	0.94	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22746270	22746379	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22746380	22746500	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22746501	22746569	1	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22746501	22746569	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22746570	22746686	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22746687	22746797	1	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22746687	22746797	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22746798	22746933	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22746934	22747095	1	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22746934	22747095	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22747096	22747209	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22747210	22747296	0.98	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22747210	22747296	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22747297	22747418	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22747419	22747472	1	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22747419	22747472	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22747473	22747572	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22747573	22747670	1	-	2	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22747573	22747670	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22747671	22747750	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22747751	22747828	1	-	2	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22747751	22747828	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	intron	22747829	22748147	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	CDS	22748148	22748802	1	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	exon	22748148	22748802	.	-	.	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
Ledus.S1	AUGUSTUS	start_codon	22748800	22748802	.	-	0	transcript_id "Ledus.S1G267300.t1"; gene_id "Ledus.S1G267300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9241.t1 is derived from g10271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5586095	5587640	.	+	.	Ledus.S3G071800
Ledus.S3	AUGUSTUS	transcript	5586095	5587640	.	+	.	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	start_codon	5586095	5586097	.	+	0	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	CDS	5586095	5586552	0.47	+	0	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	exon	5586095	5586552	.	+	.	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	intron	5586553	5586630	.	+	.	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	CDS	5586631	5586866	1	+	1	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	exon	5586631	5586866	.	+	.	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	intron	5586867	5586942	.	+	.	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	CDS	5586943	5587232	1	+	2	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	exon	5586943	5587232	.	+	.	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	intron	5587233	5587317	.	+	.	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	CDS	5587318	5587436	1	+	0	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	exon	5587318	5587436	.	+	.	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	intron	5587437	5587507	.	+	.	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	CDS	5587508	5587640	1	+	1	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	exon	5587508	5587640	.	+	.	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
Ledus.S3	AUGUSTUS	stop_codon	5587641	5587643	.	+	0	transcript_id "Ledus.S3G071800.t1"; gene_id "Ledus.S3G071800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1992.t1 is derived from g8855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14106059	14108383	.	+	.	Ledus.S2G187400
Ledus.S2	AUGUSTUS	transcript	14106059	14108383	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	start_codon	14106059	14106061	.	+	0	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	CDS	14106059	14106290	0.92	+	0	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	exon	14106059	14106290	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	intron	14106291	14106980	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	CDS	14106981	14107016	1	+	2	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	exon	14106981	14107016	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	intron	14107017	14107139	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	CDS	14107140	14107218	1	+	2	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	exon	14107140	14107218	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	intron	14107219	14107385	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	CDS	14107386	14107440	1	+	1	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	exon	14107386	14107440	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	intron	14107441	14107567	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	CDS	14107568	14107684	1	+	0	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	exon	14107568	14107684	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	intron	14107685	14107880	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	CDS	14107881	14108045	1	+	0	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	exon	14107881	14108045	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	intron	14108046	14108137	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	CDS	14108138	14108383	1	+	0	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	exon	14108138	14108383	.	+	.	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
Ledus.S2	AUGUSTUS	stop_codon	14108384	14108386	.	+	0	transcript_id "Ledus.S2G187400.t1"; gene_id "Ledus.S2G187400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13113.t1 is derived from g6923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6049397	6050139	.	-	.	Ledus.S6G017500
Ledus.S6	AUGUSTUS	transcript	6049397	6050139	.	-	.	transcript_id "Ledus.S6G017500.t1"; gene_id "Ledus.S6G017500"
Ledus.S6	AUGUSTUS	stop_codon	6049394	6049396	.	-	0	transcript_id "Ledus.S6G017500.t1"; gene_id "Ledus.S6G017500"
Ledus.S6	AUGUSTUS	CDS	6049397	6049875	0.7	-	2	transcript_id "Ledus.S6G017500.t1"; gene_id "Ledus.S6G017500"
Ledus.S6	AUGUSTUS	exon	6049397	6049875	.	-	.	transcript_id "Ledus.S6G017500.t1"; gene_id "Ledus.S6G017500"
Ledus.S6	AUGUSTUS	intron	6049876	6049937	.	-	.	transcript_id "Ledus.S6G017500.t1"; gene_id "Ledus.S6G017500"
Ledus.S6	AUGUSTUS	CDS	6049938	6050139	0.46	-	0	transcript_id "Ledus.S6G017500.t1"; gene_id "Ledus.S6G017500"
Ledus.S6	AUGUSTUS	exon	6049938	6050139	.	-	.	transcript_id "Ledus.S6G017500.t1"; gene_id "Ledus.S6G017500"
Ledus.S6	AUGUSTUS	start_codon	6050137	6050139	.	-	0	transcript_id "Ledus.S6G017500.t1"; gene_id "Ledus.S6G017500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg666.t1 is derived from g7527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3987557	3989094	.	-	.	Ledus.S2G054800
Ledus.S2	AUGUSTUS	transcript	3987557	3989094	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	stop_codon	3987554	3987556	.	-	0	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	CDS	3987557	3987637	0.78	-	0	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	exon	3987557	3987637	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	intron	3987638	3987743	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	CDS	3987744	3987875	0.6	-	0	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	exon	3987744	3987875	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	intron	3987876	3987995	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	CDS	3987996	3988041	1	-	1	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	exon	3987996	3988041	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	intron	3988042	3988113	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	CDS	3988114	3988221	1	-	1	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	exon	3988114	3988221	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	intron	3988222	3988306	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	CDS	3988307	3988416	1	-	0	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	exon	3988307	3988416	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	intron	3988417	3988494	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	CDS	3988495	3988602	1	-	0	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	exon	3988495	3988602	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	intron	3988603	3988687	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	CDS	3988688	3988790	1	-	1	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	exon	3988688	3988790	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	intron	3988791	3988882	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	CDS	3988883	3989094	0.57	-	0	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	exon	3988883	3989094	.	-	.	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
Ledus.S2	AUGUSTUS	start_codon	3989092	3989094	.	-	0	transcript_id "Ledus.S2G054800.t1"; gene_id "Ledus.S2G054800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7790.t1 is derived from g12461.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6696957	6697283	.	+	.	Ledus.S5G056800
Ledus.S5	AUGUSTUS	transcript	6696957	6697283	.	+	.	transcript_id "Ledus.S5G056800.t1"; gene_id "Ledus.S5G056800"
Ledus.S5	AUGUSTUS	start_codon	6696957	6696959	.	+	0	transcript_id "Ledus.S5G056800.t1"; gene_id "Ledus.S5G056800"
Ledus.S5	AUGUSTUS	CDS	6696957	6697283	0.68	+	0	transcript_id "Ledus.S5G056800.t1"; gene_id "Ledus.S5G056800"
Ledus.S5	AUGUSTUS	exon	6696957	6697283	.	+	.	transcript_id "Ledus.S5G056800.t1"; gene_id "Ledus.S5G056800"
Ledus.S5	AUGUSTUS	stop_codon	6697284	6697286	.	+	0	transcript_id "Ledus.S5G056800.t1"; gene_id "Ledus.S5G056800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3879.t1 is derived from g1315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13364466	13364702	.	-	.	Ledus.S1G130000
Ledus.S1	AUGUSTUS	transcript	13364466	13364702	.	-	.	transcript_id "Ledus.S1G130000.t1"; gene_id "Ledus.S1G130000"
Ledus.S1	AUGUSTUS	stop_codon	13364463	13364465	.	-	0	transcript_id "Ledus.S1G130000.t1"; gene_id "Ledus.S1G130000"
Ledus.S1	AUGUSTUS	CDS	13364466	13364702	0.8	-	0	transcript_id "Ledus.S1G130000.t1"; gene_id "Ledus.S1G130000"
Ledus.S1	AUGUSTUS	exon	13364466	13364702	.	-	.	transcript_id "Ledus.S1G130000.t1"; gene_id "Ledus.S1G130000"
Ledus.S1	AUGUSTUS	start_codon	13364700	13364702	.	-	0	transcript_id "Ledus.S1G130000.t1"; gene_id "Ledus.S1G130000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2362.t1 is derived from g9225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17558699	17558944	.	-	.	Ledus.S2G224400
Ledus.S2	AUGUSTUS	transcript	17558699	17558944	.	-	.	transcript_id "Ledus.S2G224400.t1"; gene_id "Ledus.S2G224400"
Ledus.S2	AUGUSTUS	stop_codon	17558696	17558698	.	-	0	transcript_id "Ledus.S2G224400.t1"; gene_id "Ledus.S2G224400"
Ledus.S2	AUGUSTUS	CDS	17558699	17558944	0.6	-	0	transcript_id "Ledus.S2G224400.t1"; gene_id "Ledus.S2G224400"
Ledus.S2	AUGUSTUS	exon	17558699	17558944	.	-	.	transcript_id "Ledus.S2G224400.t1"; gene_id "Ledus.S2G224400"
Ledus.S2	AUGUSTUS	start_codon	17558942	17558944	.	-	0	transcript_id "Ledus.S2G224400.t1"; gene_id "Ledus.S2G224400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10252.t1 is derived from g11282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13824468	13825040	.	-	.	Ledus.S3G172900
Ledus.S3	AUGUSTUS	transcript	13824468	13825040	.	-	.	transcript_id "Ledus.S3G172900.t1"; gene_id "Ledus.S3G172900"
Ledus.S3	AUGUSTUS	stop_codon	13824465	13824467	.	-	0	transcript_id "Ledus.S3G172900.t1"; gene_id "Ledus.S3G172900"
Ledus.S3	AUGUSTUS	CDS	13824468	13825040	1	-	0	transcript_id "Ledus.S3G172900.t1"; gene_id "Ledus.S3G172900"
Ledus.S3	AUGUSTUS	exon	13824468	13825040	.	-	.	transcript_id "Ledus.S3G172900.t1"; gene_id "Ledus.S3G172900"
Ledus.S3	AUGUSTUS	start_codon	13825038	13825040	.	-	0	transcript_id "Ledus.S3G172900.t1"; gene_id "Ledus.S3G172900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7449.t1 is derived from g12120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2770405	2771301	.	-	.	Ledus.S5G022700
Ledus.S5	AUGUSTUS	transcript	2770405	2771301	.	-	.	transcript_id "Ledus.S5G022700.t1"; gene_id "Ledus.S5G022700"
Ledus.S5	AUGUSTUS	stop_codon	2770402	2770404	.	-	0	transcript_id "Ledus.S5G022700.t1"; gene_id "Ledus.S5G022700"
Ledus.S5	AUGUSTUS	CDS	2770405	2770542	0.66	-	0	transcript_id "Ledus.S5G022700.t1"; gene_id "Ledus.S5G022700"
Ledus.S5	AUGUSTUS	exon	2770405	2770542	.	-	.	transcript_id "Ledus.S5G022700.t1"; gene_id "Ledus.S5G022700"
Ledus.S5	AUGUSTUS	intron	2770543	2770615	.	-	.	transcript_id "Ledus.S5G022700.t1"; gene_id "Ledus.S5G022700"
Ledus.S5	AUGUSTUS	CDS	2770616	2770708	1	-	0	transcript_id "Ledus.S5G022700.t1"; gene_id "Ledus.S5G022700"
Ledus.S5	AUGUSTUS	exon	2770616	2770708	.	-	.	transcript_id "Ledus.S5G022700.t1"; gene_id "Ledus.S5G022700"
Ledus.S5	AUGUSTUS	intron	2770709	2770854	.	-	.	transcript_id "Ledus.S5G022700.t1"; gene_id "Ledus.S5G022700"
Ledus.S5	AUGUSTUS	CDS	2770855	2771301	1	-	0	transcript_id "Ledus.S5G022700.t1"; gene_id "Ledus.S5G022700"
Ledus.S5	AUGUSTUS	exon	2770855	2771301	.	-	.	transcript_id "Ledus.S5G022700.t1"; gene_id "Ledus.S5G022700"
Ledus.S5	AUGUSTUS	start_codon	2771299	2771301	.	-	0	transcript_id "Ledus.S5G022700.t1"; gene_id "Ledus.S5G022700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8403.t1 is derived from g13075.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11490255	11496891	.	+	.	Ledus.S5G118100
Ledus.S5	AUGUSTUS	transcript	11490266	11496891	.	+	.	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	start_codon	11490266	11490268	.	+	0	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	CDS	11490266	11490345	1	+	0	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	exon	11490266	11490345	.	+	.	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	intron	11490346	11490580	.	+	.	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	CDS	11490581	11490653	0.97	+	1	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	exon	11490581	11490653	.	+	.	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	intron	11490654	11490759	.	+	.	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	CDS	11490760	11490815	0.99	+	0	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	exon	11490760	11490815	.	+	.	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	intron	11490816	11490901	.	+	.	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	CDS	11490902	11491009	0.33	+	1	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	exon	11490902	11491009	.	+	.	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	intron	11491010	11491169	.	+	.	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	CDS	11491170	11491243	0.31	+	1	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	exon	11491170	11491243	.	+	.	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	intron	11491244	11491405	.	+	.	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	CDS	11491406	11496891	0.3	+	2	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	exon	11491406	11496891	.	+	.	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	stop_codon	11496892	11496894	.	+	0	transcript_id "Ledus.S5G118100.t1"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	transcript	11490255	11496891	.	+	.	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	start_codon	11490255	11490257	.	+	0	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	CDS	11490255	11490345	0.96	+	0	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	exon	11490255	11490345	.	+	.	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	intron	11490346	11490561	.	+	.	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	CDS	11490562	11490653	0.98	+	2	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	exon	11490562	11490653	.	+	.	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	intron	11490654	11490759	.	+	.	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	CDS	11490760	11490815	1	+	0	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	exon	11490760	11490815	.	+	.	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	intron	11490816	11490901	.	+	.	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	CDS	11490902	11491009	0.32	+	1	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	exon	11490902	11491009	.	+	.	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	intron	11491010	11491169	.	+	.	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	CDS	11491170	11491243	0.28	+	1	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	exon	11491170	11491243	.	+	.	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	intron	11491244	11491405	.	+	.	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	CDS	11491406	11496891	0.3	+	2	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	exon	11491406	11496891	.	+	.	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
Ledus.S5	AUGUSTUS	stop_codon	11496892	11496894	.	+	0	transcript_id "Ledus.S5G118100.t2"; gene_id "Ledus.S5G118100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5678.t1 is derived from g3117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25769480	25773628	.	+	.	Ledus.S1G309900
Ledus.S1	AUGUSTUS	transcript	25769480	25773628	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	start_codon	25769480	25769482	.	+	0	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25769480	25770265	0.63	+	0	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25769480	25770265	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25770266	25770403	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25770404	25770497	1	+	0	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25770404	25770497	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25770498	25770653	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25770654	25770736	1	+	2	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25770654	25770736	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25770737	25770861	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25770862	25770959	1	+	0	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25770862	25770959	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25770960	25771070	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25771071	25771140	0.95	+	1	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25771071	25771140	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25771141	25771297	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25771298	25771391	1	+	0	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25771298	25771391	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25771392	25771469	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25771470	25771554	1	+	2	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25771470	25771554	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25771555	25771703	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25771704	25771749	0.72	+	1	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25771704	25771749	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25771750	25772078	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25772079	25772264	0.56	+	0	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25772079	25772264	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25772265	25772400	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25772401	25772471	1	+	0	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25772401	25772471	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25772472	25772603	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25772604	25772682	1	+	1	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25772604	25772682	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25772683	25772843	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25772844	25772959	1	+	0	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25772844	25772959	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25772960	25773044	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25773045	25773192	1	+	1	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25773045	25773192	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25773193	25773290	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25773291	25773360	1	+	0	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25773291	25773360	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	intron	25773361	25773476	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	CDS	25773477	25773628	1	+	2	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	exon	25773477	25773628	.	+	.	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
Ledus.S1	AUGUSTUS	stop_codon	25773629	25773631	.	+	0	transcript_id "Ledus.S1G309900.t1"; gene_id "Ledus.S1G309900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6825.t1 is derived from g4269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34516156	34517336	.	+	.	Ledus.S1G424600
Ledus.S1	AUGUSTUS	transcript	34516156	34517336	.	+	.	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	start_codon	34516156	34516158	.	+	0	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	CDS	34516156	34516354	0.47	+	0	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	exon	34516156	34516354	.	+	.	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	intron	34516355	34516576	.	+	.	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	CDS	34516577	34516713	0.78	+	2	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	exon	34516577	34516713	.	+	.	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	intron	34516714	34516800	.	+	.	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	CDS	34516801	34516910	0.82	+	0	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	exon	34516801	34516910	.	+	.	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	intron	34516911	34517006	.	+	.	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	CDS	34517007	34517136	1	+	1	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	exon	34517007	34517136	.	+	.	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	intron	34517137	34517261	.	+	.	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	CDS	34517262	34517336	0.68	+	0	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	exon	34517262	34517336	.	+	.	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
Ledus.S1	AUGUSTUS	stop_codon	34517337	34517339	.	+	0	transcript_id "Ledus.S1G424600.t1"; gene_id "Ledus.S1G424600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6726.t1 is derived from g4169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33542406	33543594	.	+	.	Ledus.S1G414700
Ledus.S1	AUGUSTUS	transcript	33542406	33543594	.	+	.	transcript_id "Ledus.S1G414700.t1"; gene_id "Ledus.S1G414700"
Ledus.S1	AUGUSTUS	start_codon	33542406	33542408	.	+	0	transcript_id "Ledus.S1G414700.t1"; gene_id "Ledus.S1G414700"
Ledus.S1	AUGUSTUS	CDS	33542406	33543429	0.95	+	0	transcript_id "Ledus.S1G414700.t1"; gene_id "Ledus.S1G414700"
Ledus.S1	AUGUSTUS	exon	33542406	33543429	.	+	.	transcript_id "Ledus.S1G414700.t1"; gene_id "Ledus.S1G414700"
Ledus.S1	AUGUSTUS	intron	33543430	33543526	.	+	.	transcript_id "Ledus.S1G414700.t1"; gene_id "Ledus.S1G414700"
Ledus.S1	AUGUSTUS	CDS	33543527	33543594	1	+	2	transcript_id "Ledus.S1G414700.t1"; gene_id "Ledus.S1G414700"
Ledus.S1	AUGUSTUS	exon	33543527	33543594	.	+	.	transcript_id "Ledus.S1G414700.t1"; gene_id "Ledus.S1G414700"
Ledus.S1	AUGUSTUS	stop_codon	33543595	33543597	.	+	0	transcript_id "Ledus.S1G414700.t1"; gene_id "Ledus.S1G414700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1848.t1 is derived from g8711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12934381	12935649	.	-	.	Ledus.S2G173000
Ledus.S2	AUGUSTUS	transcript	12934381	12935649	.	-	.	transcript_id "Ledus.S2G173000.t1"; gene_id "Ledus.S2G173000"
Ledus.S2	AUGUSTUS	stop_codon	12934378	12934380	.	-	0	transcript_id "Ledus.S2G173000.t1"; gene_id "Ledus.S2G173000"
Ledus.S2	AUGUSTUS	CDS	12934381	12935649	0.88	-	0	transcript_id "Ledus.S2G173000.t1"; gene_id "Ledus.S2G173000"
Ledus.S2	AUGUSTUS	exon	12934381	12935649	.	-	.	transcript_id "Ledus.S2G173000.t1"; gene_id "Ledus.S2G173000"
Ledus.S2	AUGUSTUS	start_codon	12935647	12935649	.	-	0	transcript_id "Ledus.S2G173000.t1"; gene_id "Ledus.S2G173000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2053.t1 is derived from g8916.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14347523	14351062	.	+	.	Ledus.S2G193500
Ledus.S2	AUGUSTUS	transcript	14349433	14351062	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	start_codon	14349433	14349435	.	+	0	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14349433	14349469	0.98	+	0	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14349433	14349469	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14349470	14349543	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14349544	14349632	1	+	2	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14349544	14349632	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14349633	14349738	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14349739	14349801	0.98	+	0	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14349739	14349801	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14349802	14350015	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14350016	14350191	1	+	0	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14350016	14350191	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14350192	14350314	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14350315	14350417	1	+	1	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14350315	14350417	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14350418	14350511	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14350512	14350660	1	+	0	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14350512	14350660	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14350661	14350741	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14350742	14350850	0.96	+	1	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14350742	14350850	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14350851	14350951	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14350952	14351062	0.98	+	0	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14350952	14351062	.	+	.	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	stop_codon	14351063	14351065	.	+	0	transcript_id "Ledus.S2G193500.t1"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	transcript	14347523	14351062	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	start_codon	14347523	14347525	.	+	0	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14347523	14347816	0.7	+	0	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14347523	14347816	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14347817	14348011	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14348012	14348290	1	+	0	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14348012	14348290	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14348291	14348514	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14348515	14348680	1	+	0	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14348515	14348680	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14348681	14348944	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14348945	14349079	1	+	2	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14348945	14349079	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14349080	14349201	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14349202	14349312	1	+	2	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14349202	14349312	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14349313	14349543	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14349544	14349632	1	+	2	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14349544	14349632	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14349633	14349738	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14349739	14349801	0.99	+	0	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14349739	14349801	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14349802	14350015	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14350016	14350191	1	+	0	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14350016	14350191	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14350192	14350314	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14350315	14350417	1	+	1	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14350315	14350417	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14350418	14350511	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14350512	14350660	1	+	0	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14350512	14350660	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14350661	14350741	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14350742	14350850	0.97	+	1	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14350742	14350850	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	intron	14350851	14350951	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	CDS	14350952	14351062	1	+	0	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	exon	14350952	14351062	.	+	.	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
Ledus.S2	AUGUSTUS	stop_codon	14351063	14351065	.	+	0	transcript_id "Ledus.S2G193500.t2"; gene_id "Ledus.S2G193500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8446.t1 is derived from g13118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11728927	11729136	.	+	.	Ledus.S5G122400
Ledus.S5	AUGUSTUS	transcript	11728927	11729136	.	+	.	transcript_id "Ledus.S5G122400.t1"; gene_id "Ledus.S5G122400"
Ledus.S5	AUGUSTUS	start_codon	11728927	11728929	.	+	0	transcript_id "Ledus.S5G122400.t1"; gene_id "Ledus.S5G122400"
Ledus.S5	AUGUSTUS	CDS	11728927	11729136	0.69	+	0	transcript_id "Ledus.S5G122400.t1"; gene_id "Ledus.S5G122400"
Ledus.S5	AUGUSTUS	exon	11728927	11729136	.	+	.	transcript_id "Ledus.S5G122400.t1"; gene_id "Ledus.S5G122400"
Ledus.S5	AUGUSTUS	stop_codon	11729137	11729139	.	+	0	transcript_id "Ledus.S5G122400.t1"; gene_id "Ledus.S5G122400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12086.t1 is derived from g5705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9452593	9452889	.	-	.	Ledus.S4G124200
Ledus.S4	AUGUSTUS	transcript	9452593	9452889	.	-	.	transcript_id "Ledus.S4G124200.t1"; gene_id "Ledus.S4G124200"
Ledus.S4	AUGUSTUS	stop_codon	9452590	9452592	.	-	0	transcript_id "Ledus.S4G124200.t1"; gene_id "Ledus.S4G124200"
Ledus.S4	AUGUSTUS	CDS	9452593	9452889	0.96	-	0	transcript_id "Ledus.S4G124200.t1"; gene_id "Ledus.S4G124200"
Ledus.S4	AUGUSTUS	exon	9452593	9452889	.	-	.	transcript_id "Ledus.S4G124200.t1"; gene_id "Ledus.S4G124200"
Ledus.S4	AUGUSTUS	start_codon	9452887	9452889	.	-	0	transcript_id "Ledus.S4G124200.t1"; gene_id "Ledus.S4G124200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4069.t1 is derived from g1505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14434468	14436357	.	+	.	Ledus.S1G149000
Ledus.S1	AUGUSTUS	transcript	14434468	14436357	.	+	.	transcript_id "Ledus.S1G149000.t1"; gene_id "Ledus.S1G149000"
Ledus.S1	AUGUSTUS	start_codon	14434468	14434470	.	+	0	transcript_id "Ledus.S1G149000.t1"; gene_id "Ledus.S1G149000"
Ledus.S1	AUGUSTUS	CDS	14434468	14436357	1	+	0	transcript_id "Ledus.S1G149000.t1"; gene_id "Ledus.S1G149000"
Ledus.S1	AUGUSTUS	exon	14434468	14436357	.	+	.	transcript_id "Ledus.S1G149000.t1"; gene_id "Ledus.S1G149000"
Ledus.S1	AUGUSTUS	stop_codon	14436358	14436360	.	+	0	transcript_id "Ledus.S1G149000.t1"; gene_id "Ledus.S1G149000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12847.t1 is derived from g11881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	160256	161050	.	+	.	Ledus.C11G001100
Ledus.C11	AUGUSTUS	transcript	160256	161050	.	+	.	transcript_id "Ledus.C11G001100.t1"; gene_id "Ledus.C11G001100"
Ledus.C11	AUGUSTUS	start_codon	160256	160258	.	+	0	transcript_id "Ledus.C11G001100.t1"; gene_id "Ledus.C11G001100"
Ledus.C11	AUGUSTUS	CDS	160256	161050	0.61	+	0	transcript_id "Ledus.C11G001100.t1"; gene_id "Ledus.C11G001100"
Ledus.C11	AUGUSTUS	exon	160256	161050	.	+	.	transcript_id "Ledus.C11G001100.t1"; gene_id "Ledus.C11G001100"
Ledus.C11	AUGUSTUS	stop_codon	161051	161053	.	+	0	transcript_id "Ledus.C11G001100.t1"; gene_id "Ledus.C11G001100"
# This transcript jg11147.t2 is derived from g4765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11148.t1 is derived from g4766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2153328	2159442	.	+	.	Ledus.S4G030400
Ledus.S4	AUGUSTUS	transcript	2153328	2159442	.	+	.	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	start_codon	2153328	2153330	.	+	0	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	CDS	2153328	2156148	0.6	+	0	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	exon	2153328	2156148	.	+	.	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	intron	2156149	2156410	.	+	.	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	CDS	2156411	2158467	0.96	+	2	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	exon	2156411	2158467	.	+	.	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	intron	2158468	2158668	.	+	.	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	CDS	2158669	2158792	1	+	0	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	exon	2158669	2158792	.	+	.	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	intron	2158793	2158892	.	+	.	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	CDS	2158893	2158957	1	+	2	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	exon	2158893	2158957	.	+	.	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	intron	2158958	2159040	.	+	.	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	CDS	2159041	2159148	1	+	0	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	exon	2159041	2159148	.	+	.	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	intron	2159149	2159229	.	+	.	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	CDS	2159230	2159442	0.59	+	0	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	exon	2159230	2159442	.	+	.	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
Ledus.S4	AUGUSTUS	stop_codon	2159443	2159445	.	+	0	transcript_id "Ledus.S4G030400.t1"; gene_id "Ledus.S4G030400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5353.t1 is derived from g2792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23582653	23584003	.	-	.	Ledus.S1G277400
Ledus.S1	AUGUSTUS	transcript	23582653	23584003	.	-	.	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	stop_codon	23582650	23582652	.	-	0	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	CDS	23582653	23582781	0.64	-	0	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	exon	23582653	23582781	.	-	.	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	intron	23582782	23582864	.	-	.	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	CDS	23582865	23582992	0.37	-	2	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	exon	23582865	23582992	.	-	.	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	intron	23582993	23583263	.	-	.	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	CDS	23583264	23583442	0.54	-	1	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	exon	23583264	23583442	.	-	.	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	intron	23583443	23583563	.	-	.	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	CDS	23583564	23584003	0.63	-	0	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	exon	23583564	23584003	.	-	.	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
Ledus.S1	AUGUSTUS	start_codon	23584001	23584003	.	-	0	transcript_id "Ledus.S1G277400.t1"; gene_id "Ledus.S1G277400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6945.t1 is derived from g6476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	116669	117448	.	-	.	Ledus.C7G000600
Ledus.C7	AUGUSTUS	transcript	116669	117448	.	-	.	transcript_id "Ledus.C7G000600.t1"; gene_id "Ledus.C7G000600"
Ledus.C7	AUGUSTUS	stop_codon	116666	116668	.	-	0	transcript_id "Ledus.C7G000600.t1"; gene_id "Ledus.C7G000600"
Ledus.C7	AUGUSTUS	CDS	116669	117448	0.55	-	0	transcript_id "Ledus.C7G000600.t1"; gene_id "Ledus.C7G000600"
Ledus.C7	AUGUSTUS	exon	116669	117448	.	-	.	transcript_id "Ledus.C7G000600.t1"; gene_id "Ledus.C7G000600"
Ledus.C7	AUGUSTUS	start_codon	117446	117448	.	-	0	transcript_id "Ledus.C7G000600.t1"; gene_id "Ledus.C7G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9499.t1 is derived from g10529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7447165	7447785	.	-	.	Ledus.S3G097600
Ledus.S3	AUGUSTUS	transcript	7447165	7447785	.	-	.	transcript_id "Ledus.S3G097600.t1"; gene_id "Ledus.S3G097600"
Ledus.S3	AUGUSTUS	stop_codon	7447162	7447164	.	-	0	transcript_id "Ledus.S3G097600.t1"; gene_id "Ledus.S3G097600"
Ledus.S3	AUGUSTUS	CDS	7447165	7447785	1	-	0	transcript_id "Ledus.S3G097600.t1"; gene_id "Ledus.S3G097600"
Ledus.S3	AUGUSTUS	exon	7447165	7447785	.	-	.	transcript_id "Ledus.S3G097600.t1"; gene_id "Ledus.S3G097600"
Ledus.S3	AUGUSTUS	start_codon	7447783	7447785	.	-	0	transcript_id "Ledus.S3G097600.t1"; gene_id "Ledus.S3G097600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3327.t1 is derived from g762.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7468837	7472116	.	+	.	Ledus.S1G074800
Ledus.S1	AUGUSTUS	transcript	7468837	7472116	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	start_codon	7468837	7468839	.	+	0	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	CDS	7468837	7468924	0.96	+	0	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	exon	7468837	7468924	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	intron	7468925	7469094	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	CDS	7469095	7469194	1	+	2	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	exon	7469095	7469194	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	intron	7469195	7469287	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	CDS	7469288	7470038	1	+	1	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	exon	7469288	7470038	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	intron	7470039	7470157	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	CDS	7470158	7470526	1	+	0	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	exon	7470158	7470526	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	intron	7470527	7470612	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	CDS	7470613	7470879	1	+	0	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	exon	7470613	7470879	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	intron	7470880	7470975	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	CDS	7470976	7471103	1	+	0	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	exon	7470976	7471103	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	intron	7471104	7471350	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	CDS	7471351	7471539	1	+	1	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	exon	7471351	7471539	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	intron	7471540	7471749	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	CDS	7471750	7472116	0.54	+	1	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	exon	7471750	7472116	.	+	.	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
Ledus.S1	AUGUSTUS	stop_codon	7472117	7472119	.	+	0	transcript_id "Ledus.S1G074800.t1"; gene_id "Ledus.S1G074800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9370.t1 is derived from g10400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6409431	6413539	.	+	.	Ledus.S3G084700
Ledus.S3	AUGUSTUS	transcript	6409431	6413539	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	start_codon	6409431	6409433	.	+	0	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	CDS	6409431	6409469	0.74	+	0	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	exon	6409431	6409469	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	intron	6409470	6409549	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	CDS	6409550	6409592	0.34	+	0	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	exon	6409550	6409592	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	intron	6409593	6409696	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	CDS	6409697	6410228	0.37	+	2	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	exon	6409697	6410228	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	intron	6410229	6410957	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	CDS	6410958	6411332	0.78	+	1	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	exon	6410958	6411332	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	intron	6411333	6411447	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	CDS	6411448	6411610	1	+	1	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	exon	6411448	6411610	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	intron	6411611	6411881	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	CDS	6411882	6411992	1	+	0	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	exon	6411882	6411992	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	intron	6411993	6412116	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	CDS	6412117	6412185	0.99	+	0	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	exon	6412117	6412185	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	intron	6412186	6412289	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	CDS	6412290	6412376	1	+	0	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	exon	6412290	6412376	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	intron	6412377	6412507	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	CDS	6412508	6413539	0.99	+	0	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	exon	6412508	6413539	.	+	.	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
Ledus.S3	AUGUSTUS	stop_codon	6413540	6413542	.	+	0	transcript_id "Ledus.S3G084700.t1"; gene_id "Ledus.S3G084700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11052.t1 is derived from g4670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1417339	1418224	.	-	.	Ledus.S4G020800
Ledus.S4	AUGUSTUS	transcript	1417339	1418224	.	-	.	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	stop_codon	1417336	1417338	.	-	0	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	CDS	1417339	1417362	1	-	0	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	exon	1417339	1417362	.	-	.	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	intron	1417363	1417595	.	-	.	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	CDS	1417596	1417710	1	-	1	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	exon	1417596	1417710	.	-	.	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	intron	1417711	1417867	.	-	.	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	CDS	1417868	1417874	1	-	2	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	exon	1417868	1417874	.	-	.	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	intron	1417875	1417942	.	-	.	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	CDS	1417943	1417993	1	-	2	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	exon	1417943	1417993	.	-	.	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	intron	1417994	1418139	.	-	.	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	CDS	1418140	1418224	0.71	-	0	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	exon	1418140	1418224	.	-	.	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
Ledus.S4	AUGUSTUS	start_codon	1418222	1418224	.	-	0	transcript_id "Ledus.S4G020800.t1"; gene_id "Ledus.S4G020800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10637.t1 is derived from g11667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16777369	16778316	.	-	.	Ledus.S3G211400
Ledus.S3	AUGUSTUS	transcript	16777369	16778316	.	-	.	transcript_id "Ledus.S3G211400.t1"; gene_id "Ledus.S3G211400"
Ledus.S3	AUGUSTUS	stop_codon	16777366	16777368	.	-	0	transcript_id "Ledus.S3G211400.t1"; gene_id "Ledus.S3G211400"
Ledus.S3	AUGUSTUS	CDS	16777369	16778316	0.97	-	0	transcript_id "Ledus.S3G211400.t1"; gene_id "Ledus.S3G211400"
Ledus.S3	AUGUSTUS	exon	16777369	16778316	.	-	.	transcript_id "Ledus.S3G211400.t1"; gene_id "Ledus.S3G211400"
Ledus.S3	AUGUSTUS	start_codon	16778314	16778316	.	-	0	transcript_id "Ledus.S3G211400.t1"; gene_id "Ledus.S3G211400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4950.t1 is derived from g2388.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20840932	20842426	.	+	.	Ledus.S1G237100
Ledus.S1	AUGUSTUS	transcript	20840932	20842426	.	+	.	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	start_codon	20840932	20840934	.	+	0	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	CDS	20840932	20840988	1	+	0	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	exon	20840932	20840988	.	+	.	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	intron	20840989	20841075	.	+	.	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	CDS	20841076	20841192	1	+	0	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	exon	20841076	20841192	.	+	.	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	intron	20841193	20841275	.	+	.	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	CDS	20841276	20841716	1	+	0	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	exon	20841276	20841716	.	+	.	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	intron	20841717	20841797	.	+	.	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	CDS	20841798	20842160	1	+	0	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	exon	20841798	20842160	.	+	.	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	intron	20842161	20842240	.	+	.	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	CDS	20842241	20842426	0.94	+	0	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	exon	20842241	20842426	.	+	.	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
Ledus.S1	AUGUSTUS	stop_codon	20842427	20842429	.	+	0	transcript_id "Ledus.S1G237100.t1"; gene_id "Ledus.S1G237100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3365.t1 is derived from g800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7870185	7872352	.	+	.	Ledus.S1G078600
Ledus.S1	AUGUSTUS	transcript	7870185	7872352	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	start_codon	7870185	7870187	.	+	0	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	CDS	7870185	7870371	0.97	+	0	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	exon	7870185	7870371	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	intron	7870372	7870678	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	CDS	7870679	7870771	1	+	2	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	exon	7870679	7870771	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	intron	7870772	7870870	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	CDS	7870871	7870952	1	+	2	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	exon	7870871	7870952	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	intron	7870953	7871158	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	CDS	7871159	7871255	1	+	1	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	exon	7871159	7871255	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	intron	7871256	7871337	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	CDS	7871338	7871413	1	+	0	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	exon	7871338	7871413	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	intron	7871414	7871532	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	CDS	7871533	7871591	0.98	+	2	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	exon	7871533	7871591	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	intron	7871592	7871699	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	CDS	7871700	7871822	1	+	0	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	exon	7871700	7871822	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	intron	7871823	7871916	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	CDS	7871917	7871974	1	+	0	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	exon	7871917	7871974	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	intron	7871975	7872088	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	CDS	7872089	7872174	1	+	2	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	exon	7872089	7872174	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	intron	7872175	7872280	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	CDS	7872281	7872352	1	+	0	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	exon	7872281	7872352	.	+	.	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
Ledus.S1	AUGUSTUS	stop_codon	7872353	7872355	.	+	0	transcript_id "Ledus.S1G078600.t1"; gene_id "Ledus.S1G078600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg454.t1 is derived from g7315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2668599	2670271	.	-	.	Ledus.S2G033600
Ledus.S2	AUGUSTUS	transcript	2668599	2670271	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	stop_codon	2668596	2668598	.	-	0	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	CDS	2668599	2668829	1	-	0	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	exon	2668599	2668829	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	intron	2668830	2668917	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	CDS	2668918	2669025	1	-	0	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	exon	2668918	2669025	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	intron	2669026	2669117	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	CDS	2669118	2669219	1	-	0	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	exon	2669118	2669219	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	intron	2669220	2669311	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	CDS	2669312	2669554	1	-	0	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	exon	2669312	2669554	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	intron	2669555	2669634	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	CDS	2669635	2669836	0.72	-	1	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	exon	2669635	2669836	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	intron	2669837	2669946	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	CDS	2669947	2669975	0.95	-	0	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	exon	2669947	2669975	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	intron	2669976	2670136	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	CDS	2670137	2670271	0.26	-	0	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	exon	2670137	2670271	.	-	.	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
Ledus.S2	AUGUSTUS	start_codon	2670269	2670271	.	-	0	transcript_id "Ledus.S2G033600.t1"; gene_id "Ledus.S2G033600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5325.t1 is derived from g2764.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23339790	23340767	.	+	.	Ledus.S1G274600
Ledus.S1	AUGUSTUS	transcript	23339790	23340767	.	+	.	transcript_id "Ledus.S1G274600.t1"; gene_id "Ledus.S1G274600"
Ledus.S1	AUGUSTUS	start_codon	23339790	23339792	.	+	0	transcript_id "Ledus.S1G274600.t1"; gene_id "Ledus.S1G274600"
Ledus.S1	AUGUSTUS	CDS	23339790	23339947	0.37	+	0	transcript_id "Ledus.S1G274600.t1"; gene_id "Ledus.S1G274600"
Ledus.S1	AUGUSTUS	exon	23339790	23339947	.	+	.	transcript_id "Ledus.S1G274600.t1"; gene_id "Ledus.S1G274600"
Ledus.S1	AUGUSTUS	intron	23339948	23340039	.	+	.	transcript_id "Ledus.S1G274600.t1"; gene_id "Ledus.S1G274600"
Ledus.S1	AUGUSTUS	CDS	23340040	23340352	0.17	+	1	transcript_id "Ledus.S1G274600.t1"; gene_id "Ledus.S1G274600"
Ledus.S1	AUGUSTUS	exon	23340040	23340352	.	+	.	transcript_id "Ledus.S1G274600.t1"; gene_id "Ledus.S1G274600"
Ledus.S1	AUGUSTUS	intron	23340353	23340467	.	+	.	transcript_id "Ledus.S1G274600.t1"; gene_id "Ledus.S1G274600"
Ledus.S1	AUGUSTUS	CDS	23340468	23340767	0.36	+	0	transcript_id "Ledus.S1G274600.t1"; gene_id "Ledus.S1G274600"
Ledus.S1	AUGUSTUS	exon	23340468	23340767	.	+	.	transcript_id "Ledus.S1G274600.t1"; gene_id "Ledus.S1G274600"
Ledus.S1	AUGUSTUS	stop_codon	23340768	23340770	.	+	0	transcript_id "Ledus.S1G274600.t1"; gene_id "Ledus.S1G274600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6425.t1 is derived from g3868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31192432	31195681	.	-	.	Ledus.S1G384600
Ledus.S1	AUGUSTUS	transcript	31192432	31195681	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	stop_codon	31192429	31192431	.	-	0	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31192432	31192871	0.99	-	2	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31192432	31192871	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	intron	31192872	31192987	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31192988	31193088	1	-	1	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31192988	31193088	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	intron	31193089	31193202	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31193203	31193344	1	-	2	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31193203	31193344	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	intron	31193345	31193465	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31193466	31193575	0.99	-	1	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31193466	31193575	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	intron	31193576	31193706	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31193707	31193779	1	-	2	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31193707	31193779	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	intron	31193780	31193874	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31193875	31193977	1	-	0	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31193875	31193977	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	intron	31193978	31194120	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31194121	31194204	0.87	-	0	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31194121	31194204	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	intron	31194205	31194318	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31194319	31194401	0.92	-	2	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31194319	31194401	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	intron	31194402	31194645	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31194646	31194749	1	-	1	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31194646	31194749	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	intron	31194750	31194907	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31194908	31194983	1	-	2	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31194908	31194983	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	intron	31194984	31195098	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31195099	31195125	0.76	-	2	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31195099	31195125	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	intron	31195126	31195294	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31195295	31195406	1	-	0	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31195295	31195406	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	intron	31195407	31195567	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	CDS	31195568	31195681	0.82	-	0	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	exon	31195568	31195681	.	-	.	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
Ledus.S1	AUGUSTUS	start_codon	31195679	31195681	.	-	0	transcript_id "Ledus.S1G384600.t1"; gene_id "Ledus.S1G384600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1779.t1 is derived from g8642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12484287	12484893	.	-	.	Ledus.S2G166100
Ledus.S2	AUGUSTUS	transcript	12484287	12484893	.	-	.	transcript_id "Ledus.S2G166100.t1"; gene_id "Ledus.S2G166100"
Ledus.S2	AUGUSTUS	stop_codon	12484284	12484286	.	-	0	transcript_id "Ledus.S2G166100.t1"; gene_id "Ledus.S2G166100"
Ledus.S2	AUGUSTUS	CDS	12484287	12484452	0.61	-	1	transcript_id "Ledus.S2G166100.t1"; gene_id "Ledus.S2G166100"
Ledus.S2	AUGUSTUS	exon	12484287	12484452	.	-	.	transcript_id "Ledus.S2G166100.t1"; gene_id "Ledus.S2G166100"
Ledus.S2	AUGUSTUS	intron	12484453	12484569	.	-	.	transcript_id "Ledus.S2G166100.t1"; gene_id "Ledus.S2G166100"
Ledus.S2	AUGUSTUS	CDS	12484570	12484641	0.43	-	1	transcript_id "Ledus.S2G166100.t1"; gene_id "Ledus.S2G166100"
Ledus.S2	AUGUSTUS	exon	12484570	12484641	.	-	.	transcript_id "Ledus.S2G166100.t1"; gene_id "Ledus.S2G166100"
Ledus.S2	AUGUSTUS	intron	12484642	12484765	.	-	.	transcript_id "Ledus.S2G166100.t1"; gene_id "Ledus.S2G166100"
Ledus.S2	AUGUSTUS	CDS	12484766	12484893	0.42	-	0	transcript_id "Ledus.S2G166100.t1"; gene_id "Ledus.S2G166100"
Ledus.S2	AUGUSTUS	exon	12484766	12484893	.	-	.	transcript_id "Ledus.S2G166100.t1"; gene_id "Ledus.S2G166100"
Ledus.S2	AUGUSTUS	start_codon	12484891	12484893	.	-	0	transcript_id "Ledus.S2G166100.t1"; gene_id "Ledus.S2G166100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5762.t1 is derived from g3203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26541288	26542463	.	-	.	Ledus.S1G318300
Ledus.S1	AUGUSTUS	transcript	26541288	26542463	.	-	.	transcript_id "Ledus.S1G318300.t1"; gene_id "Ledus.S1G318300"
Ledus.S1	AUGUSTUS	stop_codon	26541285	26541287	.	-	0	transcript_id "Ledus.S1G318300.t1"; gene_id "Ledus.S1G318300"
Ledus.S1	AUGUSTUS	CDS	26541288	26542463	1	-	0	transcript_id "Ledus.S1G318300.t1"; gene_id "Ledus.S1G318300"
Ledus.S1	AUGUSTUS	exon	26541288	26542463	.	-	.	transcript_id "Ledus.S1G318300.t1"; gene_id "Ledus.S1G318300"
Ledus.S1	AUGUSTUS	start_codon	26542461	26542463	.	-	0	transcript_id "Ledus.S1G318300.t1"; gene_id "Ledus.S1G318300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2281.t1 is derived from g9144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16909718	16910907	.	-	.	Ledus.S2G216300
Ledus.S2	AUGUSTUS	transcript	16909718	16910907	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	stop_codon	16909715	16909717	.	-	0	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	CDS	16909718	16909870	1	-	0	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	exon	16909718	16909870	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	intron	16909871	16909955	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	CDS	16909956	16910051	1	-	0	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	exon	16909956	16910051	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	intron	16910052	16910132	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	CDS	16910133	16910269	1	-	2	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	exon	16910133	16910269	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	intron	16910270	16910348	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	CDS	16910349	16910390	0.99	-	2	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	exon	16910349	16910390	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	intron	16910391	16910506	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	CDS	16910507	16910641	1	-	2	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	exon	16910507	16910641	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	intron	16910642	16910718	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	CDS	16910719	16910786	1	-	1	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	exon	16910719	16910786	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	intron	16910787	16910872	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	CDS	16910873	16910907	0.47	-	0	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	exon	16910873	16910907	.	-	.	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
Ledus.S2	AUGUSTUS	start_codon	16910905	16910907	.	-	0	transcript_id "Ledus.S2G216300.t1"; gene_id "Ledus.S2G216300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5103.t1 is derived from g2542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21687258	21687533	.	+	.	Ledus.S1G252400
Ledus.S1	AUGUSTUS	transcript	21687258	21687533	.	+	.	transcript_id "Ledus.S1G252400.t1"; gene_id "Ledus.S1G252400"
Ledus.S1	AUGUSTUS	start_codon	21687258	21687260	.	+	0	transcript_id "Ledus.S1G252400.t1"; gene_id "Ledus.S1G252400"
Ledus.S1	AUGUSTUS	CDS	21687258	21687533	0.94	+	0	transcript_id "Ledus.S1G252400.t1"; gene_id "Ledus.S1G252400"
Ledus.S1	AUGUSTUS	exon	21687258	21687533	.	+	.	transcript_id "Ledus.S1G252400.t1"; gene_id "Ledus.S1G252400"
Ledus.S1	AUGUSTUS	stop_codon	21687534	21687536	.	+	0	transcript_id "Ledus.S1G252400.t1"; gene_id "Ledus.S1G252400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11693.t1 is derived from g5312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6042194	6043592	.	+	.	Ledus.S4G084900
Ledus.S4	AUGUSTUS	transcript	6042194	6043592	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	start_codon	6042194	6042196	.	+	0	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	CDS	6042194	6042214	0.45	+	0	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	exon	6042194	6042214	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	intron	6042215	6042352	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	CDS	6042353	6042410	0.29	+	0	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	exon	6042353	6042410	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	intron	6042411	6042544	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	CDS	6042545	6042618	0.13	+	2	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	exon	6042545	6042618	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	intron	6042619	6043001	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	CDS	6043002	6043022	0.23	+	0	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	exon	6043002	6043022	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	intron	6043023	6043116	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	CDS	6043117	6043241	0.41	+	0	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	exon	6043117	6043241	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	intron	6043242	6043328	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	CDS	6043329	6043375	0.78	+	1	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	exon	6043329	6043375	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	intron	6043376	6043572	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	CDS	6043573	6043592	0.53	+	2	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	exon	6043573	6043592	.	+	.	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
Ledus.S4	AUGUSTUS	stop_codon	6043593	6043595	.	+	0	transcript_id "Ledus.S4G084900.t1"; gene_id "Ledus.S4G084900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4145.t1 is derived from g1581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14942014	14948340	.	+	.	Ledus.S1G156600
Ledus.S1	AUGUSTUS	transcript	14942014	14948340	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	start_codon	14942014	14942016	.	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14942014	14942460	0.63	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14942014	14942460	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14942461	14942555	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14942556	14942723	0.73	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14942556	14942723	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14942724	14942825	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14942826	14942888	0.74	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14942826	14942888	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14942889	14943068	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14943069	14943308	0.55	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14943069	14943308	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14943309	14943504	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14943505	14943588	1	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14943505	14943588	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14943589	14943738	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14943739	14943903	0.86	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14943739	14943903	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14943904	14944030	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14944031	14944087	0.93	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14944031	14944087	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14944088	14944183	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14944184	14944245	0.99	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14944184	14944245	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14944246	14944372	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14944373	14944427	0.99	+	1	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14944373	14944427	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14944428	14944586	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14944587	14944723	1	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14944587	14944723	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14944724	14944907	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14944908	14944973	1	+	1	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14944908	14944973	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14944974	14945160	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14945161	14945278	1	+	1	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14945161	14945278	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14945279	14945509	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14945510	14945614	1	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14945510	14945614	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14945615	14945810	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14945811	14946500	0.99	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14945811	14946500	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14946501	14946631	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14946632	14946730	1	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14946632	14946730	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14946731	14946845	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14946846	14946917	1	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14946846	14946917	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14946918	14947123	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14947124	14947286	1	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14947124	14947286	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14947287	14947422	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14947423	14947521	1	+	2	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14947423	14947521	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14947522	14947693	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14947694	14947842	1	+	2	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14947694	14947842	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14947843	14947924	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14947925	14948016	1	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14947925	14948016	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	intron	14948017	14948150	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	CDS	14948151	14948340	1	+	1	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	exon	14948151	14948340	.	+	.	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
Ledus.S1	AUGUSTUS	stop_codon	14948341	14948343	.	+	0	transcript_id "Ledus.S1G156600.t1"; gene_id "Ledus.S1G156600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9842.t1 is derived from g10872.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10477336	10480465	.	-	.	Ledus.S3G131900
Ledus.S3	AUGUSTUS	transcript	10477336	10480465	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	stop_codon	10477333	10477335	.	-	0	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10477336	10477425	1	-	0	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10477336	10477425	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10477426	10477611	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10477612	10477687	1	-	1	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10477612	10477687	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10477688	10477885	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10477886	10478147	0.8	-	2	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10477886	10478147	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10478148	10478258	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10478259	10478404	0.92	-	1	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10478259	10478404	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10478405	10479235	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10479236	10479319	1	-	1	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10479236	10479319	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10479320	10479630	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10479631	10479790	1	-	2	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10479631	10479790	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10479791	10479960	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10479961	10480465	0.88	-	0	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10479961	10480465	.	-	.	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	start_codon	10480463	10480465	.	-	0	transcript_id "Ledus.S3G131900.t1"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	transcript	10477336	10480465	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	stop_codon	10477333	10477335	.	-	0	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10477336	10477425	1	-	0	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10477336	10477425	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10477426	10477611	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10477612	10477687	1	-	1	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10477612	10477687	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10477688	10477885	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10477886	10478147	0.83	-	2	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10477886	10478147	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10478148	10478258	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10478259	10478404	0.95	-	1	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10478259	10478404	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10478405	10479235	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10479236	10479319	1	-	1	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10479236	10479319	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10479320	10479634	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10479635	10479668	0.4	-	2	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10479635	10479668	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10479669	10479739	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10479740	10479790	0.44	-	2	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10479740	10479790	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	intron	10479791	10479960	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	CDS	10479961	10480465	0.89	-	0	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	exon	10479961	10480465	.	-	.	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
Ledus.S3	AUGUSTUS	start_codon	10480463	10480465	.	-	0	transcript_id "Ledus.S3G131900.t2"; gene_id "Ledus.S3G131900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6856.t1 is derived from g4300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34727016	34727219	.	-	.	Ledus.S1G427700
Ledus.S1	AUGUSTUS	transcript	34727016	34727219	.	-	.	transcript_id "Ledus.S1G427700.t1"; gene_id "Ledus.S1G427700"
Ledus.S1	AUGUSTUS	stop_codon	34727013	34727015	.	-	0	transcript_id "Ledus.S1G427700.t1"; gene_id "Ledus.S1G427700"
Ledus.S1	AUGUSTUS	CDS	34727016	34727219	0.91	-	0	transcript_id "Ledus.S1G427700.t1"; gene_id "Ledus.S1G427700"
Ledus.S1	AUGUSTUS	exon	34727016	34727219	.	-	.	transcript_id "Ledus.S1G427700.t1"; gene_id "Ledus.S1G427700"
Ledus.S1	AUGUSTUS	start_codon	34727217	34727219	.	-	0	transcript_id "Ledus.S1G427700.t1"; gene_id "Ledus.S1G427700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2553.t1 is derived from g9416.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18899800	18900551	.	-	.	Ledus.S2G243500
Ledus.S2	AUGUSTUS	transcript	18899800	18900551	.	-	.	transcript_id "Ledus.S2G243500.t1"; gene_id "Ledus.S2G243500"
Ledus.S2	AUGUSTUS	stop_codon	18899797	18899799	.	-	0	transcript_id "Ledus.S2G243500.t1"; gene_id "Ledus.S2G243500"
Ledus.S2	AUGUSTUS	CDS	18899800	18899881	1	-	1	transcript_id "Ledus.S2G243500.t1"; gene_id "Ledus.S2G243500"
Ledus.S2	AUGUSTUS	exon	18899800	18899881	.	-	.	transcript_id "Ledus.S2G243500.t1"; gene_id "Ledus.S2G243500"
Ledus.S2	AUGUSTUS	intron	18899882	18900042	.	-	.	transcript_id "Ledus.S2G243500.t1"; gene_id "Ledus.S2G243500"
Ledus.S2	AUGUSTUS	CDS	18900043	18900235	0.88	-	2	transcript_id "Ledus.S2G243500.t1"; gene_id "Ledus.S2G243500"
Ledus.S2	AUGUSTUS	exon	18900043	18900235	.	-	.	transcript_id "Ledus.S2G243500.t1"; gene_id "Ledus.S2G243500"
Ledus.S2	AUGUSTUS	intron	18900236	18900478	.	-	.	transcript_id "Ledus.S2G243500.t1"; gene_id "Ledus.S2G243500"
Ledus.S2	AUGUSTUS	CDS	18900479	18900551	0.94	-	0	transcript_id "Ledus.S2G243500.t1"; gene_id "Ledus.S2G243500"
Ledus.S2	AUGUSTUS	exon	18900479	18900551	.	-	.	transcript_id "Ledus.S2G243500.t1"; gene_id "Ledus.S2G243500"
Ledus.S2	AUGUSTUS	start_codon	18900549	18900551	.	-	0	transcript_id "Ledus.S2G243500.t1"; gene_id "Ledus.S2G243500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7607.t1 is derived from g12278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4345106	4346094	.	+	.	Ledus.S5G038500
Ledus.S5	AUGUSTUS	transcript	4345106	4346094	.	+	.	transcript_id "Ledus.S5G038500.t1"; gene_id "Ledus.S5G038500"
Ledus.S5	AUGUSTUS	start_codon	4345106	4345108	.	+	0	transcript_id "Ledus.S5G038500.t1"; gene_id "Ledus.S5G038500"
Ledus.S5	AUGUSTUS	CDS	4345106	4345425	0.72	+	0	transcript_id "Ledus.S5G038500.t1"; gene_id "Ledus.S5G038500"
Ledus.S5	AUGUSTUS	exon	4345106	4345425	.	+	.	transcript_id "Ledus.S5G038500.t1"; gene_id "Ledus.S5G038500"
Ledus.S5	AUGUSTUS	intron	4345426	4345757	.	+	.	transcript_id "Ledus.S5G038500.t1"; gene_id "Ledus.S5G038500"
Ledus.S5	AUGUSTUS	CDS	4345758	4346094	0.29	+	1	transcript_id "Ledus.S5G038500.t1"; gene_id "Ledus.S5G038500"
Ledus.S5	AUGUSTUS	exon	4345758	4346094	.	+	.	transcript_id "Ledus.S5G038500.t1"; gene_id "Ledus.S5G038500"
Ledus.S5	AUGUSTUS	stop_codon	4346095	4346097	.	+	0	transcript_id "Ledus.S5G038500.t1"; gene_id "Ledus.S5G038500"
# This transcript jg3006.t2 is derived from g441.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3007.t1 is derived from g442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5265742	5268446	.	+	.	Ledus.S1G042800
Ledus.S1	AUGUSTUS	transcript	5265742	5268446	.	+	.	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	start_codon	5265742	5265744	.	+	0	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	CDS	5265742	5266199	0.96	+	0	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	exon	5265742	5266199	.	+	.	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	intron	5266200	5266330	.	+	.	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	CDS	5266331	5266829	0.98	+	1	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	exon	5266331	5266829	.	+	.	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	intron	5266830	5266954	.	+	.	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	CDS	5266955	5267715	0.91	+	0	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	exon	5266955	5267715	.	+	.	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	intron	5267716	5267834	.	+	.	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	CDS	5267835	5267938	0.87	+	1	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	exon	5267835	5267938	.	+	.	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	intron	5267939	5268438	.	+	.	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	CDS	5268439	5268446	0.93	+	2	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	exon	5268439	5268446	.	+	.	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
Ledus.S1	AUGUSTUS	stop_codon	5268447	5268449	.	+	0	transcript_id "Ledus.S1G042800.t1"; gene_id "Ledus.S1G042800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6261.t1 is derived from g3704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29954213	29954839	.	+	.	Ledus.S1G368200
Ledus.S1	AUGUSTUS	transcript	29954213	29954839	.	+	.	transcript_id "Ledus.S1G368200.t1"; gene_id "Ledus.S1G368200"
Ledus.S1	AUGUSTUS	start_codon	29954213	29954215	.	+	0	transcript_id "Ledus.S1G368200.t1"; gene_id "Ledus.S1G368200"
Ledus.S1	AUGUSTUS	CDS	29954213	29954450	0.63	+	0	transcript_id "Ledus.S1G368200.t1"; gene_id "Ledus.S1G368200"
Ledus.S1	AUGUSTUS	exon	29954213	29954450	.	+	.	transcript_id "Ledus.S1G368200.t1"; gene_id "Ledus.S1G368200"
Ledus.S1	AUGUSTUS	intron	29954451	29954528	.	+	.	transcript_id "Ledus.S1G368200.t1"; gene_id "Ledus.S1G368200"
Ledus.S1	AUGUSTUS	CDS	29954529	29954839	0.94	+	2	transcript_id "Ledus.S1G368200.t1"; gene_id "Ledus.S1G368200"
Ledus.S1	AUGUSTUS	exon	29954529	29954839	.	+	.	transcript_id "Ledus.S1G368200.t1"; gene_id "Ledus.S1G368200"
Ledus.S1	AUGUSTUS	stop_codon	29954840	29954842	.	+	0	transcript_id "Ledus.S1G368200.t1"; gene_id "Ledus.S1G368200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10558.t1 is derived from g11588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16137661	16139366	.	-	.	Ledus.S3G203500
Ledus.S3	AUGUSTUS	transcript	16137661	16139366	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	stop_codon	16137658	16137660	.	-	0	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	CDS	16137661	16137873	1	-	0	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	exon	16137661	16137873	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	intron	16137874	16137957	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	CDS	16137958	16138060	1	-	1	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	exon	16137958	16138060	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	intron	16138061	16138158	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	CDS	16138159	16138238	1	-	0	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	exon	16138159	16138238	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	intron	16138239	16138331	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	CDS	16138332	16138389	1	-	1	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	exon	16138332	16138389	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	intron	16138390	16138480	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	CDS	16138481	16138578	1	-	0	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	exon	16138481	16138578	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	intron	16138579	16138704	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	CDS	16138705	16138894	1	-	1	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	exon	16138705	16138894	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	intron	16138895	16139038	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	CDS	16139039	16139058	0.59	-	0	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	exon	16139039	16139058	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	intron	16139059	16139171	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	CDS	16139172	16139366	0.81	-	0	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	exon	16139172	16139366	.	-	.	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
Ledus.S3	AUGUSTUS	start_codon	16139364	16139366	.	-	0	transcript_id "Ledus.S3G203500.t1"; gene_id "Ledus.S3G203500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3659.t1 is derived from g1095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10511161	10513262	.	+	.	Ledus.S1G108000
Ledus.S1	AUGUSTUS	transcript	10511161	10513262	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	start_codon	10511161	10511163	.	+	0	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	CDS	10511161	10511214	1	+	0	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	exon	10511161	10511214	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	intron	10511215	10511301	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	CDS	10511302	10511406	1	+	0	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	exon	10511302	10511406	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	intron	10511407	10511481	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	CDS	10511482	10511901	0.46	+	0	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	exon	10511482	10511901	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	intron	10511902	10512018	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	CDS	10512019	10512124	0.84	+	0	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	exon	10512019	10512124	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	intron	10512125	10512229	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	CDS	10512230	10512405	0.97	+	2	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	exon	10512230	10512405	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	intron	10512406	10512551	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	CDS	10512552	10512712	1	+	0	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	exon	10512552	10512712	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	intron	10512713	10512797	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	CDS	10512798	10513056	0.93	+	1	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	exon	10512798	10513056	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	intron	10513057	10513157	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	CDS	10513158	10513262	0.68	+	0	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	exon	10513158	10513262	.	+	.	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
Ledus.S1	AUGUSTUS	stop_codon	10513263	10513265	.	+	0	transcript_id "Ledus.S1G108000.t1"; gene_id "Ledus.S1G108000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3037.t1 is derived from g472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5435116	5437825	.	-	.	Ledus.S1G045800
Ledus.S1	AUGUSTUS	transcript	5435116	5437825	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	stop_codon	5435113	5435115	.	-	0	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	CDS	5435116	5435346	0.91	-	0	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	exon	5435116	5435346	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	intron	5435347	5435425	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	CDS	5435426	5435539	1	-	0	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	exon	5435426	5435539	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	intron	5435540	5435629	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	CDS	5435630	5435713	1	-	0	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	exon	5435630	5435713	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	intron	5435714	5435825	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	CDS	5435826	5435940	1	-	1	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	exon	5435826	5435940	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	intron	5435941	5436049	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	CDS	5436050	5436204	1	-	0	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	exon	5436050	5436204	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	intron	5436205	5436393	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	CDS	5436394	5436483	0.99	-	0	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	exon	5436394	5436483	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	intron	5436484	5436693	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	CDS	5436694	5436803	1	-	2	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	exon	5436694	5436803	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	intron	5436804	5436953	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	CDS	5436954	5437014	1	-	0	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	exon	5436954	5437014	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	intron	5437015	5437154	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	CDS	5437155	5437273	1	-	2	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	exon	5437155	5437273	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	intron	5437274	5437367	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	CDS	5437368	5437512	1	-	0	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	exon	5437368	5437512	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	intron	5437513	5437594	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	CDS	5437595	5437825	0.99	-	0	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	exon	5437595	5437825	.	-	.	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
Ledus.S1	AUGUSTUS	start_codon	5437823	5437825	.	-	0	transcript_id "Ledus.S1G045800.t1"; gene_id "Ledus.S1G045800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12515.t1 is derived from g6136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12588637	12590945	.	+	.	Ledus.S4G167100
Ledus.S4	AUGUSTUS	transcript	12588637	12590945	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	start_codon	12588637	12588639	.	+	0	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	CDS	12588637	12588839	0.43	+	0	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	exon	12588637	12588839	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	intron	12588840	12588953	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	CDS	12588954	12589191	0.96	+	1	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	exon	12588954	12589191	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	intron	12589192	12589285	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	CDS	12589286	12589613	0.94	+	0	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	exon	12589286	12589613	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	intron	12589614	12589700	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	CDS	12589701	12589935	0.94	+	2	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	exon	12589701	12589935	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	intron	12589936	12590014	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	CDS	12590015	12590595	0.85	+	1	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	exon	12590015	12590595	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	intron	12590596	12590672	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	CDS	12590673	12590766	0.79	+	2	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	exon	12590673	12590766	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	intron	12590767	12590929	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	CDS	12590930	12590945	0.78	+	1	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	exon	12590930	12590945	.	+	.	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
Ledus.S4	AUGUSTUS	stop_codon	12590946	12590948	.	+	0	transcript_id "Ledus.S4G167100.t1"; gene_id "Ledus.S4G167100"
# This transcript jg3098.t2 is derived from g533.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3099.t1 is derived from g534.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5836553	5838520	.	+	.	Ledus.S1G052000
Ledus.S1	AUGUSTUS	transcript	5836691	5838402	.	+	.	transcript_id "Ledus.S1G052000.t1"; gene_id "Ledus.S1G052000"
Ledus.S1	AUGUSTUS	start_codon	5836691	5836693	.	+	0	transcript_id "Ledus.S1G052000.t1"; gene_id "Ledus.S1G052000"
Ledus.S1	AUGUSTUS	CDS	5836691	5838295	0.28	+	0	transcript_id "Ledus.S1G052000.t1"; gene_id "Ledus.S1G052000"
Ledus.S1	AUGUSTUS	exon	5836691	5838295	.	+	.	transcript_id "Ledus.S1G052000.t1"; gene_id "Ledus.S1G052000"
Ledus.S1	AUGUSTUS	intron	5838296	5838378	.	+	.	transcript_id "Ledus.S1G052000.t1"; gene_id "Ledus.S1G052000"
Ledus.S1	AUGUSTUS	CDS	5838379	5838402	1	+	0	transcript_id "Ledus.S1G052000.t1"; gene_id "Ledus.S1G052000"
Ledus.S1	AUGUSTUS	exon	5838379	5838402	.	+	.	transcript_id "Ledus.S1G052000.t1"; gene_id "Ledus.S1G052000"
Ledus.S1	AUGUSTUS	stop_codon	5838403	5838405	.	+	0	transcript_id "Ledus.S1G052000.t1"; gene_id "Ledus.S1G052000"
Ledus.S1	AUGUSTUS	transcript	5836553	5838520	.	+	.	transcript_id "Ledus.S1G052000.t2"; gene_id "Ledus.S1G052000"
Ledus.S1	AUGUSTUS	start_codon	5836553	5836555	.	+	0	transcript_id "Ledus.S1G052000.t2"; gene_id "Ledus.S1G052000"
Ledus.S1	AUGUSTUS	CDS	5836553	5838520	0.55	+	0	transcript_id "Ledus.S1G052000.t2"; gene_id "Ledus.S1G052000"
Ledus.S1	AUGUSTUS	exon	5836553	5838520	.	+	.	transcript_id "Ledus.S1G052000.t2"; gene_id "Ledus.S1G052000"
Ledus.S1	AUGUSTUS	stop_codon	5838521	5838523	.	+	0	transcript_id "Ledus.S1G052000.t2"; gene_id "Ledus.S1G052000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10359.t1 is derived from g11389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14384877	14390208	.	+	.	Ledus.S3G183600
Ledus.S3	AUGUSTUS	transcript	14384877	14390208	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	start_codon	14384877	14384879	.	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14384877	14384979	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14384877	14384979	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14384980	14385068	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14385069	14385163	1	+	2	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14385069	14385163	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14385164	14385259	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14385260	14385316	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14385260	14385316	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14385317	14385404	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14385405	14385555	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14385405	14385555	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14385556	14385640	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14385641	14385711	1	+	2	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14385641	14385711	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14385712	14385857	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14385858	14385982	0.69	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14385858	14385982	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14385983	14386093	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14386094	14386254	0.76	+	1	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14386094	14386254	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14386255	14386417	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14386418	14386559	0.9	+	2	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14386418	14386559	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14386560	14386756	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14386757	14386820	1	+	1	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14386757	14386820	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14386821	14386988	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14386989	14387153	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14386989	14387153	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14387154	14387330	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14387331	14387384	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14387331	14387384	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14387385	14387537	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14387538	14387654	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14387538	14387654	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14387655	14387769	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14387770	14387829	0.71	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14387770	14387829	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14387830	14387965	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14387966	14388043	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14387966	14388043	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14388044	14388139	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14388140	14388247	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14388140	14388247	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14388248	14388362	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14388363	14388428	0.71	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14388363	14388428	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14388429	14388545	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14388546	14388623	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14388546	14388623	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14388624	14388765	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14388766	14388899	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14388766	14388899	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14388900	14389037	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14389038	14389131	1	+	1	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14389038	14389131	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14389132	14389218	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14389219	14389296	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14389219	14389296	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14389297	14389378	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14389379	14389441	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14389379	14389441	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14389442	14389518	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14389519	14389587	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14389519	14389587	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14389588	14389687	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14389688	14389783	1	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14389688	14389783	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	intron	14389784	14389896	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	CDS	14389897	14390208	0.77	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	exon	14389897	14390208	.	+	.	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
Ledus.S3	AUGUSTUS	stop_codon	14390209	14390211	.	+	0	transcript_id "Ledus.S3G183600.t1"; gene_id "Ledus.S3G183600"
# This transcript jg11762.t2 is derived from g5381.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11763.t1 is derived from g5382.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6646976	6654365	.	+	.	Ledus.S4G091900
Ledus.S4	AUGUSTUS	transcript	6646976	6654365	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	start_codon	6646976	6646978	.	+	0	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6646976	6646995	0.97	+	0	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6646976	6646995	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6646996	6647159	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6647160	6647243	1	+	1	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6647160	6647243	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6647244	6647521	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6647522	6647566	1	+	1	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6647522	6647566	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6647567	6647671	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6647672	6648176	0.94	+	1	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6647672	6648176	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6648177	6648344	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6648345	6648441	1	+	0	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6648345	6648441	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6648442	6648730	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6648731	6648814	1	+	2	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6648731	6648814	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6648815	6648897	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6648898	6649104	0.99	+	2	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6648898	6649104	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6649105	6649203	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6649204	6650930	0.99	+	2	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6649204	6650930	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6650931	6651206	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6651207	6653050	1	+	0	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6651207	6653050	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6653051	6653200	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6653201	6654365	0.96	+	1	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6653201	6654365	.	+	.	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	stop_codon	6654366	6654368	.	+	0	transcript_id "Ledus.S4G091900.t1"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	transcript	6646976	6654365	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	start_codon	6646976	6646978	.	+	0	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6646976	6646995	0.94	+	0	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6646976	6646995	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6646996	6647159	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6647160	6647243	1	+	1	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6647160	6647243	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6647244	6647521	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6647522	6647566	1	+	1	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6647522	6647566	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6647567	6647671	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6647672	6648176	0.97	+	1	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6647672	6648176	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6648177	6648377	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6648378	6648441	1	+	0	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6648378	6648441	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6648442	6648730	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6648731	6648814	1	+	2	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6648731	6648814	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6648815	6648897	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6648898	6649104	1	+	2	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6648898	6649104	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6649105	6649203	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6649204	6650930	0.99	+	2	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6649204	6650930	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6650931	6651206	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6651207	6653050	0.98	+	0	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6651207	6653050	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	intron	6653051	6653200	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	CDS	6653201	6654365	0.96	+	1	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	exon	6653201	6654365	.	+	.	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
Ledus.S4	AUGUSTUS	stop_codon	6654366	6654368	.	+	0	transcript_id "Ledus.S4G091900.t2"; gene_id "Ledus.S4G091900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2915.t1 is derived from g350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4551702	4560333	.	-	.	Ledus.S1G033600
Ledus.S1	AUGUSTUS	transcript	4551702	4560333	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	stop_codon	4551699	4551701	.	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4551702	4551870	1	-	1	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4551702	4551870	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4551871	4552017	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4552018	4552403	1	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4552018	4552403	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4552404	4552485	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4552486	4552650	0.98	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4552486	4552650	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4552651	4552760	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4552761	4553738	0.91	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4552761	4553738	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4553739	4553900	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4553901	4554100	0.98	-	2	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4553901	4554100	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4554101	4554213	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4554214	4554248	0.95	-	1	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4554214	4554248	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4554249	4554417	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4554418	4555043	0.99	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4554418	4555043	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4555044	4555140	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4555141	4555236	1	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4555141	4555236	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4555237	4555379	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4555380	4555532	0.98	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4555380	4555532	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4555533	4555703	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4555704	4555886	1	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4555704	4555886	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4555887	4555977	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4555978	4556128	1	-	1	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4555978	4556128	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4556129	4556228	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4556229	4556514	0.84	-	2	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4556229	4556514	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4556515	4556601	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4556602	4556734	0.84	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4556602	4556734	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4556735	4557328	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4557329	4557451	1	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4557329	4557451	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4557452	4557597	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4557598	4557770	0.85	-	2	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4557598	4557770	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4557771	4557876	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4557877	4558096	0.96	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4557877	4558096	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4558097	4558209	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4558210	4558604	1	-	2	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4558210	4558604	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4558605	4558680	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4558681	4558891	1	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4558681	4558891	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4558892	4559043	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4559044	4559157	1	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4559044	4559157	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4559158	4559333	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4559334	4559695	0.28	-	2	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4559334	4559695	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4559696	4559785	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4559786	4560005	0.16	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4559786	4560005	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	intron	4560006	4560123	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	CDS	4560124	4560333	0.43	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	exon	4560124	4560333	.	-	.	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
Ledus.S1	AUGUSTUS	start_codon	4560331	4560333	.	-	0	transcript_id "Ledus.S1G033600.t1"; gene_id "Ledus.S1G033600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12246.t1 is derived from g5866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10630268	10631108	.	-	.	Ledus.S4G140200
Ledus.S4	AUGUSTUS	transcript	10630268	10631108	.	-	.	transcript_id "Ledus.S4G140200.t1"; gene_id "Ledus.S4G140200"
Ledus.S4	AUGUSTUS	stop_codon	10630265	10630267	.	-	0	transcript_id "Ledus.S4G140200.t1"; gene_id "Ledus.S4G140200"
Ledus.S4	AUGUSTUS	CDS	10630268	10630573	0.49	-	0	transcript_id "Ledus.S4G140200.t1"; gene_id "Ledus.S4G140200"
Ledus.S4	AUGUSTUS	exon	10630268	10630573	.	-	.	transcript_id "Ledus.S4G140200.t1"; gene_id "Ledus.S4G140200"
Ledus.S4	AUGUSTUS	intron	10630574	10630700	.	-	.	transcript_id "Ledus.S4G140200.t1"; gene_id "Ledus.S4G140200"
Ledus.S4	AUGUSTUS	CDS	10630701	10631108	0.63	-	0	transcript_id "Ledus.S4G140200.t1"; gene_id "Ledus.S4G140200"
Ledus.S4	AUGUSTUS	exon	10630701	10631108	.	-	.	transcript_id "Ledus.S4G140200.t1"; gene_id "Ledus.S4G140200"
Ledus.S4	AUGUSTUS	start_codon	10631106	10631108	.	-	0	transcript_id "Ledus.S4G140200.t1"; gene_id "Ledus.S4G140200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7420.t1 is derived from g12091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2247775	2248792	.	-	.	Ledus.S5G019800
Ledus.S5	AUGUSTUS	transcript	2247775	2248792	.	-	.	transcript_id "Ledus.S5G019800.t1"; gene_id "Ledus.S5G019800"
Ledus.S5	AUGUSTUS	stop_codon	2247772	2247774	.	-	0	transcript_id "Ledus.S5G019800.t1"; gene_id "Ledus.S5G019800"
Ledus.S5	AUGUSTUS	CDS	2247775	2247789	0.81	-	0	transcript_id "Ledus.S5G019800.t1"; gene_id "Ledus.S5G019800"
Ledus.S5	AUGUSTUS	exon	2247775	2247789	.	-	.	transcript_id "Ledus.S5G019800.t1"; gene_id "Ledus.S5G019800"
Ledus.S5	AUGUSTUS	intron	2247790	2248120	.	-	.	transcript_id "Ledus.S5G019800.t1"; gene_id "Ledus.S5G019800"
Ledus.S5	AUGUSTUS	CDS	2248121	2248792	0.63	-	0	transcript_id "Ledus.S5G019800.t1"; gene_id "Ledus.S5G019800"
Ledus.S5	AUGUSTUS	exon	2248121	2248792	.	-	.	transcript_id "Ledus.S5G019800.t1"; gene_id "Ledus.S5G019800"
Ledus.S5	AUGUSTUS	start_codon	2248790	2248792	.	-	0	transcript_id "Ledus.S5G019800.t1"; gene_id "Ledus.S5G019800"
# This transcript jg10115.t2 is derived from g11145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10116.t1 is derived from g11146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12892175	12892974	.	-	.	Ledus.S3G159300
Ledus.S3	AUGUSTUS	transcript	12892175	12892974	.	-	.	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	stop_codon	12892172	12892174	.	-	0	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	CDS	12892175	12892348	1	-	0	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	exon	12892175	12892348	.	-	.	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	intron	12892349	12892443	.	-	.	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	CDS	12892444	12892580	1	-	2	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	exon	12892444	12892580	.	-	.	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	intron	12892581	12892754	.	-	.	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	CDS	12892755	12892836	0.61	-	0	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	exon	12892755	12892836	.	-	.	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	intron	12892837	12892953	.	-	.	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	CDS	12892954	12892974	0.6	-	0	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	exon	12892954	12892974	.	-	.	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
Ledus.S3	AUGUSTUS	start_codon	12892972	12892974	.	-	0	transcript_id "Ledus.S3G159300.t1"; gene_id "Ledus.S3G159300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg172.t1 is derived from g7033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	528760	529389	.	+	.	Ledus.S2G005400
Ledus.S2	AUGUSTUS	transcript	528760	529389	.	+	.	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	start_codon	528760	528762	.	+	0	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	CDS	528760	528858	1	+	0	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	exon	528760	528858	.	+	.	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	intron	528859	528928	.	+	.	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	CDS	528929	528976	1	+	0	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	exon	528929	528976	.	+	.	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	intron	528977	529071	.	+	.	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	CDS	529072	529123	1	+	0	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	exon	529072	529123	.	+	.	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	intron	529124	529222	.	+	.	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	CDS	529223	529389	1	+	2	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	exon	529223	529389	.	+	.	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
Ledus.S2	AUGUSTUS	stop_codon	529390	529392	.	+	0	transcript_id "Ledus.S2G005400.t1"; gene_id "Ledus.S2G005400"
# This transcript jg1273.t2 is derived from g8134.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1274.t1 is derived from g8135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9018980	9020428	.	+	.	Ledus.S2G115600
Ledus.S2	AUGUSTUS	transcript	9018980	9020428	.	+	.	transcript_id "Ledus.S2G115600.t1"; gene_id "Ledus.S2G115600"
Ledus.S2	AUGUSTUS	start_codon	9018980	9018982	.	+	0	transcript_id "Ledus.S2G115600.t1"; gene_id "Ledus.S2G115600"
Ledus.S2	AUGUSTUS	CDS	9018980	9020428	1	+	0	transcript_id "Ledus.S2G115600.t1"; gene_id "Ledus.S2G115600"
Ledus.S2	AUGUSTUS	exon	9018980	9020428	.	+	.	transcript_id "Ledus.S2G115600.t1"; gene_id "Ledus.S2G115600"
Ledus.S2	AUGUSTUS	stop_codon	9020429	9020431	.	+	0	transcript_id "Ledus.S2G115600.t1"; gene_id "Ledus.S2G115600"
# This transcript jg9418.t2 is derived from g10448.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9419.t1 is derived from g10449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6623894	6624656	.	+	.	Ledus.S3G089600
Ledus.S3	AUGUSTUS	transcript	6623894	6624656	.	+	.	transcript_id "Ledus.S3G089600.t1"; gene_id "Ledus.S3G089600"
Ledus.S3	AUGUSTUS	start_codon	6623894	6623896	.	+	0	transcript_id "Ledus.S3G089600.t1"; gene_id "Ledus.S3G089600"
Ledus.S3	AUGUSTUS	CDS	6623894	6624177	0.23	+	0	transcript_id "Ledus.S3G089600.t1"; gene_id "Ledus.S3G089600"
Ledus.S3	AUGUSTUS	exon	6623894	6624177	.	+	.	transcript_id "Ledus.S3G089600.t1"; gene_id "Ledus.S3G089600"
Ledus.S3	AUGUSTUS	intron	6624178	6624340	.	+	.	transcript_id "Ledus.S3G089600.t1"; gene_id "Ledus.S3G089600"
Ledus.S3	AUGUSTUS	CDS	6624341	6624447	0.58	+	1	transcript_id "Ledus.S3G089600.t1"; gene_id "Ledus.S3G089600"
Ledus.S3	AUGUSTUS	exon	6624341	6624447	.	+	.	transcript_id "Ledus.S3G089600.t1"; gene_id "Ledus.S3G089600"
Ledus.S3	AUGUSTUS	intron	6624448	6624624	.	+	.	transcript_id "Ledus.S3G089600.t1"; gene_id "Ledus.S3G089600"
Ledus.S3	AUGUSTUS	CDS	6624625	6624656	1	+	2	transcript_id "Ledus.S3G089600.t1"; gene_id "Ledus.S3G089600"
Ledus.S3	AUGUSTUS	exon	6624625	6624656	.	+	.	transcript_id "Ledus.S3G089600.t1"; gene_id "Ledus.S3G089600"
Ledus.S3	AUGUSTUS	stop_codon	6624657	6624659	.	+	0	transcript_id "Ledus.S3G089600.t1"; gene_id "Ledus.S3G089600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3382.t1 is derived from g817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7976388	7978204	.	-	.	Ledus.S1G080300
Ledus.S1	AUGUSTUS	transcript	7976388	7978204	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	stop_codon	7976385	7976387	.	-	0	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	CDS	7976388	7976432	1	-	0	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	exon	7976388	7976432	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	intron	7976433	7976511	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	CDS	7976512	7976725	1	-	1	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	exon	7976512	7976725	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	intron	7976726	7976811	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	CDS	7976812	7976946	1	-	1	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	exon	7976812	7976946	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	intron	7976947	7977025	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	CDS	7977026	7977108	1	-	0	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	exon	7977026	7977108	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	intron	7977109	7977213	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	CDS	7977214	7977285	1	-	0	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	exon	7977214	7977285	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	intron	7977286	7977354	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	CDS	7977355	7977423	1	-	0	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	exon	7977355	7977423	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	intron	7977424	7977509	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	CDS	7977510	7977647	1	-	0	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	exon	7977510	7977647	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	intron	7977648	7977736	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	CDS	7977737	7978204	0.56	-	0	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	exon	7977737	7978204	.	-	.	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
Ledus.S1	AUGUSTUS	start_codon	7978202	7978204	.	-	0	transcript_id "Ledus.S1G080300.t1"; gene_id "Ledus.S1G080300"
# This transcript jg10341.t1 is derived from g11371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14327882	14330797	.	+	.	Ledus.S3G181800
Ledus.S3	AUGUSTUS	transcript	14327882	14330797	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	start_codon	14327882	14327884	.	+	0	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	CDS	14327882	14327965	0.89	+	0	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	exon	14327882	14327965	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	intron	14327966	14328183	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	CDS	14328184	14328200	0.33	+	0	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	exon	14328184	14328200	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	intron	14328201	14328285	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	CDS	14328286	14328386	0.21	+	1	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	exon	14328286	14328386	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	intron	14328387	14328750	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	CDS	14328751	14328780	0.44	+	2	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	exon	14328751	14328780	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	intron	14328781	14328911	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	CDS	14328912	14329017	0.63	+	2	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	exon	14328912	14329017	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	intron	14329018	14329090	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	CDS	14329091	14329282	0.61	+	1	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	exon	14329091	14329282	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	intron	14329283	14329457	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	CDS	14329458	14329538	0.64	+	1	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	exon	14329458	14329538	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	intron	14329539	14329843	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	CDS	14329844	14329993	0.65	+	1	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	exon	14329844	14329993	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	intron	14329994	14330075	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	CDS	14330076	14330165	0.59	+	1	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	exon	14330076	14330165	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	intron	14330166	14330258	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	CDS	14330259	14330333	0.94	+	1	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	exon	14330259	14330333	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	intron	14330334	14330542	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	CDS	14330543	14330620	1	+	1	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	exon	14330543	14330620	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	intron	14330621	14330745	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	CDS	14330746	14330797	1	+	1	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	exon	14330746	14330797	.	+	.	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
Ledus.S3	AUGUSTUS	stop_codon	14330798	14330800	.	+	0	transcript_id "Ledus.S3G181800.t1"; gene_id "Ledus.S3G181800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7719.t1 is derived from g12390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5508293	5511080	.	+	.	Ledus.S5G049700
Ledus.S5	AUGUSTUS	transcript	5508293	5511080	.	+	.	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	start_codon	5508293	5508295	.	+	0	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	CDS	5508293	5508939	0.6	+	0	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	exon	5508293	5508939	.	+	.	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	intron	5508940	5509032	.	+	.	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	CDS	5509033	5509971	0.94	+	1	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	exon	5509033	5509971	.	+	.	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	intron	5509972	5510122	.	+	.	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	CDS	5510123	5510618	0.68	+	1	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	exon	5510123	5510618	.	+	.	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	intron	5510619	5510741	.	+	.	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	CDS	5510742	5511080	0.7	+	0	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	exon	5510742	5511080	.	+	.	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
Ledus.S5	AUGUSTUS	stop_codon	5511081	5511083	.	+	0	transcript_id "Ledus.S5G049700.t1"; gene_id "Ledus.S5G049700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8443.t1 is derived from g13115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11710929	11711702	.	-	.	Ledus.S5G122100
Ledus.S5	AUGUSTUS	transcript	11710929	11711702	.	-	.	transcript_id "Ledus.S5G122100.t1"; gene_id "Ledus.S5G122100"
Ledus.S5	AUGUSTUS	stop_codon	11710926	11710928	.	-	0	transcript_id "Ledus.S5G122100.t1"; gene_id "Ledus.S5G122100"
Ledus.S5	AUGUSTUS	CDS	11710929	11711702	0.85	-	0	transcript_id "Ledus.S5G122100.t1"; gene_id "Ledus.S5G122100"
Ledus.S5	AUGUSTUS	exon	11710929	11711702	.	-	.	transcript_id "Ledus.S5G122100.t1"; gene_id "Ledus.S5G122100"
Ledus.S5	AUGUSTUS	start_codon	11711700	11711702	.	-	0	transcript_id "Ledus.S5G122100.t1"; gene_id "Ledus.S5G122100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11379.t1 is derived from g4997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3887652	3888470	.	-	.	Ledus.S4G053500
Ledus.S4	AUGUSTUS	transcript	3887652	3888470	.	-	.	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	stop_codon	3887649	3887651	.	-	0	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	CDS	3887652	3888022	0.36	-	2	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	exon	3887652	3888022	.	-	.	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	intron	3888023	3888096	.	-	.	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	CDS	3888097	3888147	0.99	-	2	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	exon	3888097	3888147	.	-	.	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	intron	3888148	3888275	.	-	.	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	CDS	3888276	3888350	0.99	-	2	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	exon	3888276	3888350	.	-	.	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	intron	3888351	3888448	.	-	.	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	CDS	3888449	3888470	0.9	-	0	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	exon	3888449	3888470	.	-	.	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	start_codon	3888468	3888470	.	-	0	transcript_id "Ledus.S4G053500.t1"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	transcript	3887652	3888470	.	-	.	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	stop_codon	3887649	3887651	.	-	0	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	CDS	3887652	3888022	0.27	-	2	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	exon	3887652	3888022	.	-	.	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	intron	3888023	3888096	.	-	.	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	CDS	3888097	3888144	0.43	-	2	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	exon	3888097	3888144	.	-	.	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	intron	3888145	3888275	.	-	.	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	CDS	3888276	3888350	0.89	-	2	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	exon	3888276	3888350	.	-	.	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	intron	3888351	3888448	.	-	.	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	CDS	3888449	3888470	0.88	-	0	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	exon	3888449	3888470	.	-	.	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
Ledus.S4	AUGUSTUS	start_codon	3888468	3888470	.	-	0	transcript_id "Ledus.S4G053500.t2"; gene_id "Ledus.S4G053500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg724.t1 is derived from g7585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4472113	4473891	.	-	.	Ledus.S2G060600
Ledus.S2	AUGUSTUS	transcript	4472113	4473891	.	-	.	transcript_id "Ledus.S2G060600.t1"; gene_id "Ledus.S2G060600"
Ledus.S2	AUGUSTUS	stop_codon	4472110	4472112	.	-	0	transcript_id "Ledus.S2G060600.t1"; gene_id "Ledus.S2G060600"
Ledus.S2	AUGUSTUS	CDS	4472113	4473891	0.83	-	0	transcript_id "Ledus.S2G060600.t1"; gene_id "Ledus.S2G060600"
Ledus.S2	AUGUSTUS	exon	4472113	4473891	.	-	.	transcript_id "Ledus.S2G060600.t1"; gene_id "Ledus.S2G060600"
Ledus.S2	AUGUSTUS	start_codon	4473889	4473891	.	-	0	transcript_id "Ledus.S2G060600.t1"; gene_id "Ledus.S2G060600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11915.t1 is derived from g5534.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7732633	7737095	.	+	.	Ledus.S4G107100
Ledus.S4	AUGUSTUS	transcript	7732633	7737095	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	start_codon	7732633	7732635	.	+	0	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	CDS	7732633	7733382	0.99	+	0	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	exon	7732633	7733382	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	intron	7733383	7733871	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	CDS	7733872	7735072	0.65	+	0	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	exon	7733872	7735072	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	intron	7735073	7735430	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	CDS	7735431	7735531	0.51	+	2	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	exon	7735431	7735531	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	intron	7735532	7735616	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	CDS	7735617	7735723	1	+	0	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	exon	7735617	7735723	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	intron	7735724	7735865	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	CDS	7735866	7735998	1	+	1	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	exon	7735866	7735998	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	intron	7735999	7736099	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	CDS	7736100	7736252	0.99	+	0	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	exon	7736100	7736252	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	intron	7736253	7736461	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	CDS	7736462	7736539	0.47	+	0	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	exon	7736462	7736539	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	intron	7736540	7736744	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	CDS	7736745	7736770	0.48	+	0	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	exon	7736745	7736770	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	intron	7736771	7736947	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	CDS	7736948	7737095	0.92	+	1	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	exon	7736948	7737095	.	+	.	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
Ledus.S4	AUGUSTUS	stop_codon	7737096	7737098	.	+	0	transcript_id "Ledus.S4G107100.t1"; gene_id "Ledus.S4G107100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1605.t1 is derived from g8466.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11326979	11328682	.	-	.	Ledus.S2G148700
Ledus.S2	AUGUSTUS	transcript	11326979	11328682	.	-	.	transcript_id "Ledus.S2G148700.t1"; gene_id "Ledus.S2G148700"
Ledus.S2	AUGUSTUS	stop_codon	11326976	11326978	.	-	0	transcript_id "Ledus.S2G148700.t1"; gene_id "Ledus.S2G148700"
Ledus.S2	AUGUSTUS	CDS	11326979	11328682	0.99	-	0	transcript_id "Ledus.S2G148700.t1"; gene_id "Ledus.S2G148700"
Ledus.S2	AUGUSTUS	exon	11326979	11328682	.	-	.	transcript_id "Ledus.S2G148700.t1"; gene_id "Ledus.S2G148700"
Ledus.S2	AUGUSTUS	start_codon	11328680	11328682	.	-	0	transcript_id "Ledus.S2G148700.t1"; gene_id "Ledus.S2G148700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9641.t1 is derived from g10671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8567922	8568629	.	-	.	Ledus.S3G111800
Ledus.S3	AUGUSTUS	transcript	8567922	8568629	.	-	.	transcript_id "Ledus.S3G111800.t1"; gene_id "Ledus.S3G111800"
Ledus.S3	AUGUSTUS	stop_codon	8567919	8567921	.	-	0	transcript_id "Ledus.S3G111800.t1"; gene_id "Ledus.S3G111800"
Ledus.S3	AUGUSTUS	CDS	8567922	8568629	0.42	-	0	transcript_id "Ledus.S3G111800.t1"; gene_id "Ledus.S3G111800"
Ledus.S3	AUGUSTUS	exon	8567922	8568629	.	-	.	transcript_id "Ledus.S3G111800.t1"; gene_id "Ledus.S3G111800"
Ledus.S3	AUGUSTUS	start_codon	8568627	8568629	.	-	0	transcript_id "Ledus.S3G111800.t1"; gene_id "Ledus.S3G111800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13118.t1 is derived from g6928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6303437	6303736	.	-	.	Ledus.S6G018000
Ledus.S6	AUGUSTUS	transcript	6303437	6303736	.	-	.	transcript_id "Ledus.S6G018000.t1"; gene_id "Ledus.S6G018000"
Ledus.S6	AUGUSTUS	stop_codon	6303434	6303436	.	-	0	transcript_id "Ledus.S6G018000.t1"; gene_id "Ledus.S6G018000"
Ledus.S6	AUGUSTUS	CDS	6303437	6303736	0.76	-	0	transcript_id "Ledus.S6G018000.t1"; gene_id "Ledus.S6G018000"
Ledus.S6	AUGUSTUS	exon	6303437	6303736	.	-	.	transcript_id "Ledus.S6G018000.t1"; gene_id "Ledus.S6G018000"
Ledus.S6	AUGUSTUS	start_codon	6303734	6303736	.	-	0	transcript_id "Ledus.S6G018000.t1"; gene_id "Ledus.S6G018000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1085.t1 is derived from g7946.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7436636	7437180	.	+	.	Ledus.S2G096700
Ledus.S2	AUGUSTUS	transcript	7436636	7437180	.	+	.	transcript_id "Ledus.S2G096700.t1"; gene_id "Ledus.S2G096700"
Ledus.S2	AUGUSTUS	start_codon	7436636	7436638	.	+	0	transcript_id "Ledus.S2G096700.t1"; gene_id "Ledus.S2G096700"
Ledus.S2	AUGUSTUS	CDS	7436636	7436718	0.52	+	0	transcript_id "Ledus.S2G096700.t1"; gene_id "Ledus.S2G096700"
Ledus.S2	AUGUSTUS	exon	7436636	7436718	.	+	.	transcript_id "Ledus.S2G096700.t1"; gene_id "Ledus.S2G096700"
Ledus.S2	AUGUSTUS	intron	7436719	7436993	.	+	.	transcript_id "Ledus.S2G096700.t1"; gene_id "Ledus.S2G096700"
Ledus.S2	AUGUSTUS	CDS	7436994	7437180	0.64	+	1	transcript_id "Ledus.S2G096700.t1"; gene_id "Ledus.S2G096700"
Ledus.S2	AUGUSTUS	exon	7436994	7437180	.	+	.	transcript_id "Ledus.S2G096700.t1"; gene_id "Ledus.S2G096700"
Ledus.S2	AUGUSTUS	stop_codon	7437181	7437183	.	+	0	transcript_id "Ledus.S2G096700.t1"; gene_id "Ledus.S2G096700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9731.t1 is derived from g10761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9475070	9475441	.	+	.	Ledus.S3G120800
Ledus.S3	AUGUSTUS	transcript	9475070	9475441	.	+	.	transcript_id "Ledus.S3G120800.t1"; gene_id "Ledus.S3G120800"
Ledus.S3	AUGUSTUS	start_codon	9475070	9475072	.	+	0	transcript_id "Ledus.S3G120800.t1"; gene_id "Ledus.S3G120800"
Ledus.S3	AUGUSTUS	CDS	9475070	9475441	0.62	+	0	transcript_id "Ledus.S3G120800.t1"; gene_id "Ledus.S3G120800"
Ledus.S3	AUGUSTUS	exon	9475070	9475441	.	+	.	transcript_id "Ledus.S3G120800.t1"; gene_id "Ledus.S3G120800"
Ledus.S3	AUGUSTUS	stop_codon	9475442	9475444	.	+	0	transcript_id "Ledus.S3G120800.t1"; gene_id "Ledus.S3G120800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11158.t1 is derived from g4776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2247982	2248593	.	-	.	Ledus.S4G031400
Ledus.S4	AUGUSTUS	transcript	2247982	2248593	.	-	.	transcript_id "Ledus.S4G031400.t1"; gene_id "Ledus.S4G031400"
Ledus.S4	AUGUSTUS	stop_codon	2247979	2247981	.	-	0	transcript_id "Ledus.S4G031400.t1"; gene_id "Ledus.S4G031400"
Ledus.S4	AUGUSTUS	CDS	2247982	2248170	0.93	-	0	transcript_id "Ledus.S4G031400.t1"; gene_id "Ledus.S4G031400"
Ledus.S4	AUGUSTUS	exon	2247982	2248170	.	-	.	transcript_id "Ledus.S4G031400.t1"; gene_id "Ledus.S4G031400"
Ledus.S4	AUGUSTUS	intron	2248171	2248311	.	-	.	transcript_id "Ledus.S4G031400.t1"; gene_id "Ledus.S4G031400"
Ledus.S4	AUGUSTUS	CDS	2248312	2248408	0.71	-	1	transcript_id "Ledus.S4G031400.t1"; gene_id "Ledus.S4G031400"
Ledus.S4	AUGUSTUS	exon	2248312	2248408	.	-	.	transcript_id "Ledus.S4G031400.t1"; gene_id "Ledus.S4G031400"
Ledus.S4	AUGUSTUS	intron	2248409	2248585	.	-	.	transcript_id "Ledus.S4G031400.t1"; gene_id "Ledus.S4G031400"
Ledus.S4	AUGUSTUS	CDS	2248586	2248593	0.35	-	0	transcript_id "Ledus.S4G031400.t1"; gene_id "Ledus.S4G031400"
Ledus.S4	AUGUSTUS	exon	2248586	2248593	.	-	.	transcript_id "Ledus.S4G031400.t1"; gene_id "Ledus.S4G031400"
Ledus.S4	AUGUSTUS	start_codon	2248591	2248593	.	-	0	transcript_id "Ledus.S4G031400.t1"; gene_id "Ledus.S4G031400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3079.t1 is derived from g514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5759222	5762863	.	+	.	Ledus.S1G050000
Ledus.S1	AUGUSTUS	transcript	5759222	5762863	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	start_codon	5759222	5759224	.	+	0	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5759222	5759262	1	+	0	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5759222	5759262	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5759263	5759627	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5759628	5759709	1	+	1	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5759628	5759709	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5759710	5759863	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5759864	5759960	0.94	+	0	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5759864	5759960	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5759961	5760084	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5760085	5760197	0.93	+	2	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5760085	5760197	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5760198	5760380	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5760381	5760475	1	+	0	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5760381	5760475	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5760476	5760638	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5760639	5760762	1	+	1	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5760639	5760762	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5760763	5760907	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5760908	5761021	0.72	+	0	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5760908	5761021	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5761022	5761094	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5761095	5761193	0.67	+	0	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5761095	5761193	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5761194	5761295	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5761296	5761478	0.87	+	0	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5761296	5761478	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5761479	5761566	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5761567	5761651	1	+	0	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5761567	5761651	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5761652	5761781	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5761782	5761846	1	+	2	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5761782	5761846	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5761847	5762029	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5762030	5762137	0.97	+	0	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5762030	5762137	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5762138	5762246	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5762247	5762483	0.88	+	0	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5762247	5762483	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	intron	5762484	5762569	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	CDS	5762570	5762863	1	+	0	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	exon	5762570	5762863	.	+	.	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
Ledus.S1	AUGUSTUS	stop_codon	5762864	5762866	.	+	0	transcript_id "Ledus.S1G050000.t1"; gene_id "Ledus.S1G050000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4503.t1 is derived from g1939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17396848	17404374	.	-	.	Ledus.S1G192400
Ledus.S1	AUGUSTUS	transcript	17396848	17404374	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	stop_codon	17396845	17396847	.	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17396848	17397391	1	-	1	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17396848	17397391	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17397392	17397508	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17397509	17397759	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17397509	17397759	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17397760	17397848	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17397849	17397927	1	-	1	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17397849	17397927	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17397928	17398029	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17398030	17398233	0.99	-	1	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17398030	17398233	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17398234	17398324	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17398325	17398557	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17398325	17398557	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17398558	17398650	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17398651	17398718	1	-	2	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17398651	17398718	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17398719	17398841	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17398842	17398959	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17398842	17398959	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17398960	17399145	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17399146	17399437	1	-	1	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17399146	17399437	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17399438	17399610	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17399611	17399666	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17399611	17399666	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17399667	17399762	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17399763	17399915	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17399763	17399915	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17399916	17400043	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17400044	17400185	1	-	1	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17400044	17400185	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17400186	17400344	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17400345	17400508	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17400345	17400508	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17400509	17400633	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17400634	17400753	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17400634	17400753	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17400754	17400850	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17400851	17401003	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17400851	17401003	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17401004	17401090	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17401091	17401163	1	-	1	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17401091	17401163	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17401164	17401260	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17401261	17401514	0.82	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17401261	17401514	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17401515	17401639	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17401640	17401773	1	-	2	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17401640	17401773	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17401774	17401854	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17401855	17402245	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17401855	17402245	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17402246	17402315	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17402316	17402420	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17402316	17402420	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17402421	17402581	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17402582	17402686	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17402582	17402686	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17402687	17402793	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17402794	17403004	0.88	-	1	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17402794	17403004	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17403005	17403113	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17403114	17403304	0.99	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17403114	17403304	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17403305	17403399	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17403400	17403492	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17403400	17403492	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17403493	17403591	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17403592	17403687	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17403592	17403687	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17403688	17403778	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17403779	17403841	1	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17403779	17403841	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17403842	17403959	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17403960	17404128	1	-	1	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17403960	17404128	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	intron	17404129	17404228	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	CDS	17404229	17404374	0.32	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	exon	17404229	17404374	.	-	.	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
Ledus.S1	AUGUSTUS	start_codon	17404372	17404374	.	-	0	transcript_id "Ledus.S1G192400.t1"; gene_id "Ledus.S1G192400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2315.t1 is derived from g9178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17138774	17139271	.	-	.	Ledus.S2G219700
Ledus.S2	AUGUSTUS	transcript	17138774	17139271	.	-	.	transcript_id "Ledus.S2G219700.t1"; gene_id "Ledus.S2G219700"
Ledus.S2	AUGUSTUS	stop_codon	17138771	17138773	.	-	0	transcript_id "Ledus.S2G219700.t1"; gene_id "Ledus.S2G219700"
Ledus.S2	AUGUSTUS	CDS	17138774	17139271	0.97	-	0	transcript_id "Ledus.S2G219700.t1"; gene_id "Ledus.S2G219700"
Ledus.S2	AUGUSTUS	exon	17138774	17139271	.	-	.	transcript_id "Ledus.S2G219700.t1"; gene_id "Ledus.S2G219700"
Ledus.S2	AUGUSTUS	start_codon	17139269	17139271	.	-	0	transcript_id "Ledus.S2G219700.t1"; gene_id "Ledus.S2G219700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4725.t1 is derived from g2163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19265303	19265659	.	-	.	Ledus.S1G214600
Ledus.S1	AUGUSTUS	transcript	19265303	19265659	.	-	.	transcript_id "Ledus.S1G214600.t1"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	stop_codon	19265300	19265302	.	-	0	transcript_id "Ledus.S1G214600.t1"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	CDS	19265303	19265434	1	-	0	transcript_id "Ledus.S1G214600.t1"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	exon	19265303	19265434	.	-	.	transcript_id "Ledus.S1G214600.t1"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	intron	19265435	19265512	.	-	.	transcript_id "Ledus.S1G214600.t1"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	CDS	19265513	19265659	0.95	-	0	transcript_id "Ledus.S1G214600.t1"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	exon	19265513	19265659	.	-	.	transcript_id "Ledus.S1G214600.t1"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	start_codon	19265657	19265659	.	-	0	transcript_id "Ledus.S1G214600.t1"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	transcript	19265303	19265659	.	-	.	transcript_id "Ledus.S1G214600.t2"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	stop_codon	19265300	19265302	.	-	0	transcript_id "Ledus.S1G214600.t2"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	CDS	19265303	19265437	1	-	0	transcript_id "Ledus.S1G214600.t2"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	exon	19265303	19265437	.	-	.	transcript_id "Ledus.S1G214600.t2"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	intron	19265438	19265536	.	-	.	transcript_id "Ledus.S1G214600.t2"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	CDS	19265537	19265659	0.94	-	0	transcript_id "Ledus.S1G214600.t2"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	exon	19265537	19265659	.	-	.	transcript_id "Ledus.S1G214600.t2"; gene_id "Ledus.S1G214600"
Ledus.S1	AUGUSTUS	start_codon	19265657	19265659	.	-	0	transcript_id "Ledus.S1G214600.t2"; gene_id "Ledus.S1G214600"
# This transcript jg5256.t2 is derived from g2695.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5256.t3 is derived from g2695.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5257.t1 is derived from g2696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22763411	22765661	.	+	.	Ledus.S1G267800
Ledus.S1	AUGUSTUS	transcript	22763411	22765661	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	start_codon	22763411	22763413	.	+	0	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	CDS	22763411	22763541	0.88	+	0	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	exon	22763411	22763541	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	intron	22763542	22763614	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	CDS	22763615	22763734	1	+	1	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	exon	22763615	22763734	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	intron	22763735	22763828	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	CDS	22763829	22763949	1	+	1	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	exon	22763829	22763949	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	intron	22763950	22764604	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	CDS	22764605	22764697	1	+	0	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	exon	22764605	22764697	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	intron	22764698	22764795	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	CDS	22764796	22764841	1	+	0	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	exon	22764796	22764841	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	intron	22764842	22764966	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	CDS	22764967	22765039	1	+	2	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	exon	22764967	22765039	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	intron	22765040	22765134	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	CDS	22765135	22765169	1	+	1	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	exon	22765135	22765169	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	intron	22765170	22765255	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	CDS	22765256	22765344	1	+	2	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	exon	22765256	22765344	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	intron	22765345	22765454	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	CDS	22765455	22765661	0.51	+	0	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	exon	22765455	22765661	.	+	.	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
Ledus.S1	AUGUSTUS	stop_codon	22765662	22765664	.	+	0	transcript_id "Ledus.S1G267800.t1"; gene_id "Ledus.S1G267800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9079.t1 is derived from g10109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4396714	4403675	.	+	.	Ledus.S3G055600
Ledus.S3	AUGUSTUS	transcript	4396714	4403675	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	start_codon	4396714	4396716	.	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4396714	4396729	0.71	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4396714	4396729	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4396730	4396887	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4396888	4397471	0.98	+	2	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4396888	4397471	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4397472	4397555	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4397556	4397688	0.95	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4397556	4397688	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4397689	4397805	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4397806	4399019	0.98	+	2	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4397806	4399019	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4399020	4399138	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4399139	4399246	1	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4399139	4399246	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4399247	4399422	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4399423	4399593	1	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4399423	4399593	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4399594	4399704	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4399705	4399929	1	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4399705	4399929	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4399930	4400147	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4400148	4400633	0.89	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4400148	4400633	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4400634	4400771	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4400772	4401557	0.95	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4400772	4401557	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4401558	4401639	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4401640	4401837	1	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4401640	4401837	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4401838	4401970	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4401971	4402381	0.76	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4401971	4402381	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4402382	4402482	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4402483	4402722	1	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4402483	4402722	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4402723	4402977	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4402978	4403199	0.53	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4402978	4403199	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4403200	4403436	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4403437	4403460	0.49	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4403437	4403460	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	intron	4403461	4403552	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	CDS	4403553	4403675	0.63	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	exon	4403553	4403675	.	+	.	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
Ledus.S3	AUGUSTUS	stop_codon	4403676	4403678	.	+	0	transcript_id "Ledus.S3G055600.t1"; gene_id "Ledus.S3G055600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8837.t1 is derived from g9867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2217385	2218191	.	-	.	Ledus.S3G031400
Ledus.S3	AUGUSTUS	transcript	2217385	2218191	.	-	.	transcript_id "Ledus.S3G031400.t1"; gene_id "Ledus.S3G031400"
Ledus.S3	AUGUSTUS	stop_codon	2217382	2217384	.	-	0	transcript_id "Ledus.S3G031400.t1"; gene_id "Ledus.S3G031400"
Ledus.S3	AUGUSTUS	CDS	2217385	2217555	0.97	-	0	transcript_id "Ledus.S3G031400.t1"; gene_id "Ledus.S3G031400"
Ledus.S3	AUGUSTUS	exon	2217385	2217555	.	-	.	transcript_id "Ledus.S3G031400.t1"; gene_id "Ledus.S3G031400"
Ledus.S3	AUGUSTUS	intron	2217556	2217888	.	-	.	transcript_id "Ledus.S3G031400.t1"; gene_id "Ledus.S3G031400"
Ledus.S3	AUGUSTUS	CDS	2217889	2218191	0.99	-	0	transcript_id "Ledus.S3G031400.t1"; gene_id "Ledus.S3G031400"
Ledus.S3	AUGUSTUS	exon	2217889	2218191	.	-	.	transcript_id "Ledus.S3G031400.t1"; gene_id "Ledus.S3G031400"
Ledus.S3	AUGUSTUS	start_codon	2218189	2218191	.	-	0	transcript_id "Ledus.S3G031400.t1"; gene_id "Ledus.S3G031400"
# This transcript jg734.t2 is derived from g7595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg735.t1 is derived from g7596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4677375	4679035	.	-	.	Ledus.S2G061700
Ledus.S2	AUGUSTUS	transcript	4677375	4679035	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	stop_codon	4677372	4677374	.	-	0	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	CDS	4677375	4677473	1	-	0	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	exon	4677375	4677473	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	intron	4677474	4677763	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	CDS	4677764	4677853	1	-	0	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	exon	4677764	4677853	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	intron	4677854	4677941	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	CDS	4677942	4678025	1	-	0	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	exon	4677942	4678025	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	intron	4678026	4678134	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	CDS	4678135	4678294	1	-	1	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	exon	4678135	4678294	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	intron	4678295	4678401	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	CDS	4678402	4678469	1	-	0	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	exon	4678402	4678469	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	intron	4678470	4678564	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	CDS	4678565	4678636	1	-	0	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	exon	4678565	4678636	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	intron	4678637	4678744	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	CDS	4678745	4679035	0.59	-	0	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	exon	4678745	4679035	.	-	.	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
Ledus.S2	AUGUSTUS	start_codon	4679033	4679035	.	-	0	transcript_id "Ledus.S2G061700.t1"; gene_id "Ledus.S2G061700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6634.t1 is derived from g4077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32803725	32805086	.	+	.	Ledus.S1G405500
Ledus.S1	AUGUSTUS	transcript	32803725	32805086	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	start_codon	32803725	32803727	.	+	0	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	CDS	32803725	32803793	0.99	+	0	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	exon	32803725	32803793	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	intron	32803794	32803873	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	CDS	32803874	32803971	1	+	0	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	exon	32803874	32803971	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	intron	32803972	32804036	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	CDS	32804037	32804131	1	+	1	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	exon	32804037	32804131	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	intron	32804132	32804213	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	CDS	32804214	32804293	1	+	2	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	exon	32804214	32804293	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	intron	32804294	32804381	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	CDS	32804382	32804490	0.79	+	0	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	exon	32804382	32804490	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	intron	32804491	32804616	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	CDS	32804617	32804630	0.69	+	2	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	exon	32804617	32804630	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	intron	32804631	32804722	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	CDS	32804723	32804824	1	+	0	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	exon	32804723	32804824	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	intron	32804825	32804909	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	CDS	32804910	32805086	1	+	0	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	exon	32804910	32805086	.	+	.	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
Ledus.S1	AUGUSTUS	stop_codon	32805087	32805089	.	+	0	transcript_id "Ledus.S1G405500.t1"; gene_id "Ledus.S1G405500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9453.t1 is derived from g10483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7059205	7059560	.	+	.	Ledus.S3G093000
Ledus.S3	AUGUSTUS	transcript	7059205	7059560	.	+	.	transcript_id "Ledus.S3G093000.t1"; gene_id "Ledus.S3G093000"
Ledus.S3	AUGUSTUS	start_codon	7059205	7059207	.	+	0	transcript_id "Ledus.S3G093000.t1"; gene_id "Ledus.S3G093000"
Ledus.S3	AUGUSTUS	CDS	7059205	7059333	0.87	+	0	transcript_id "Ledus.S3G093000.t1"; gene_id "Ledus.S3G093000"
Ledus.S3	AUGUSTUS	exon	7059205	7059333	.	+	.	transcript_id "Ledus.S3G093000.t1"; gene_id "Ledus.S3G093000"
Ledus.S3	AUGUSTUS	intron	7059334	7059440	.	+	.	transcript_id "Ledus.S3G093000.t1"; gene_id "Ledus.S3G093000"
Ledus.S3	AUGUSTUS	CDS	7059441	7059560	0.96	+	0	transcript_id "Ledus.S3G093000.t1"; gene_id "Ledus.S3G093000"
Ledus.S3	AUGUSTUS	exon	7059441	7059560	.	+	.	transcript_id "Ledus.S3G093000.t1"; gene_id "Ledus.S3G093000"
Ledus.S3	AUGUSTUS	stop_codon	7059561	7059563	.	+	0	transcript_id "Ledus.S3G093000.t1"; gene_id "Ledus.S3G093000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10940.t1 is derived from g4558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	738291	739775	.	-	.	Ledus.S4G009600
Ledus.S4	AUGUSTUS	transcript	738291	739775	.	-	.	transcript_id "Ledus.S4G009600.t1"; gene_id "Ledus.S4G009600"
Ledus.S4	AUGUSTUS	stop_codon	738288	738290	.	-	0	transcript_id "Ledus.S4G009600.t1"; gene_id "Ledus.S4G009600"
Ledus.S4	AUGUSTUS	CDS	738291	739775	1	-	0	transcript_id "Ledus.S4G009600.t1"; gene_id "Ledus.S4G009600"
Ledus.S4	AUGUSTUS	exon	738291	739775	.	-	.	transcript_id "Ledus.S4G009600.t1"; gene_id "Ledus.S4G009600"
Ledus.S4	AUGUSTUS	start_codon	739773	739775	.	-	0	transcript_id "Ledus.S4G009600.t1"; gene_id "Ledus.S4G009600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3734.t1 is derived from g1170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11251657	11252575	.	+	.	Ledus.S1G115500
Ledus.S1	AUGUSTUS	transcript	11251657	11252575	.	+	.	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	start_codon	11251657	11251659	.	+	0	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	CDS	11251657	11251727	0.68	+	0	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	exon	11251657	11251727	.	+	.	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	intron	11251728	11251804	.	+	.	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	CDS	11251805	11251926	0.46	+	1	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	exon	11251805	11251926	.	+	.	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	intron	11251927	11251991	.	+	.	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	CDS	11251992	11252151	1	+	2	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	exon	11251992	11252151	.	+	.	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	intron	11252152	11252259	.	+	.	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	CDS	11252260	11252416	1	+	1	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	exon	11252260	11252416	.	+	.	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	intron	11252417	11252515	.	+	.	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	CDS	11252516	11252575	1	+	0	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	exon	11252516	11252575	.	+	.	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
Ledus.S1	AUGUSTUS	stop_codon	11252576	11252578	.	+	0	transcript_id "Ledus.S1G115500.t1"; gene_id "Ledus.S1G115500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7695.t1 is derived from g12366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5230244	5231572	.	-	.	Ledus.S5G047300
Ledus.S5	AUGUSTUS	transcript	5230244	5231572	.	-	.	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	stop_codon	5230241	5230243	.	-	0	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	CDS	5230244	5230735	0.99	-	0	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	exon	5230244	5230735	.	-	.	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	intron	5230736	5230856	.	-	.	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	CDS	5230857	5230909	1	-	2	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	exon	5230857	5230909	.	-	.	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	intron	5230910	5231008	.	-	.	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	CDS	5231009	5231058	1	-	1	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	exon	5231009	5231058	.	-	.	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	intron	5231059	5231159	.	-	.	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	CDS	5231160	5231336	1	-	1	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	exon	5231160	5231336	.	-	.	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	intron	5231337	5231423	.	-	.	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	CDS	5231424	5231572	0.83	-	0	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	exon	5231424	5231572	.	-	.	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
Ledus.S5	AUGUSTUS	start_codon	5231570	5231572	.	-	0	transcript_id "Ledus.S5G047300.t1"; gene_id "Ledus.S5G047300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2213.t1 is derived from g9076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16091082	16092050	.	-	.	Ledus.S2G209500
Ledus.S2	AUGUSTUS	transcript	16091082	16092050	.	-	.	transcript_id "Ledus.S2G209500.t1"; gene_id "Ledus.S2G209500"
Ledus.S2	AUGUSTUS	stop_codon	16091079	16091081	.	-	0	transcript_id "Ledus.S2G209500.t1"; gene_id "Ledus.S2G209500"
Ledus.S2	AUGUSTUS	CDS	16091082	16092050	0.35	-	0	transcript_id "Ledus.S2G209500.t1"; gene_id "Ledus.S2G209500"
Ledus.S2	AUGUSTUS	exon	16091082	16092050	.	-	.	transcript_id "Ledus.S2G209500.t1"; gene_id "Ledus.S2G209500"
Ledus.S2	AUGUSTUS	start_codon	16092048	16092050	.	-	0	transcript_id "Ledus.S2G209500.t1"; gene_id "Ledus.S2G209500"
# This transcript jg1177.t1 is derived from g8038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8224300	8224825	.	-	.	Ledus.S2G105900
Ledus.S2	AUGUSTUS	transcript	8224300	8224825	.	-	.	transcript_id "Ledus.S2G105900.t1"; gene_id "Ledus.S2G105900"
Ledus.S2	AUGUSTUS	stop_codon	8224297	8224299	.	-	0	transcript_id "Ledus.S2G105900.t1"; gene_id "Ledus.S2G105900"
Ledus.S2	AUGUSTUS	CDS	8224300	8224374	0.27	-	0	transcript_id "Ledus.S2G105900.t1"; gene_id "Ledus.S2G105900"
Ledus.S2	AUGUSTUS	exon	8224300	8224374	.	-	.	transcript_id "Ledus.S2G105900.t1"; gene_id "Ledus.S2G105900"
Ledus.S2	AUGUSTUS	intron	8224375	8224483	.	-	.	transcript_id "Ledus.S2G105900.t1"; gene_id "Ledus.S2G105900"
Ledus.S2	AUGUSTUS	CDS	8224484	8224825	0.19	-	0	transcript_id "Ledus.S2G105900.t1"; gene_id "Ledus.S2G105900"
Ledus.S2	AUGUSTUS	exon	8224484	8224825	.	-	.	transcript_id "Ledus.S2G105900.t1"; gene_id "Ledus.S2G105900"
Ledus.S2	AUGUSTUS	start_codon	8224823	8224825	.	-	0	transcript_id "Ledus.S2G105900.t1"; gene_id "Ledus.S2G105900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4789.t1 is derived from g2227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19785392	19786148	.	+	.	Ledus.S1G221000
Ledus.S1	AUGUSTUS	transcript	19785392	19786148	.	+	.	transcript_id "Ledus.S1G221000.t1"; gene_id "Ledus.S1G221000"
Ledus.S1	AUGUSTUS	start_codon	19785392	19785394	.	+	0	transcript_id "Ledus.S1G221000.t1"; gene_id "Ledus.S1G221000"
Ledus.S1	AUGUSTUS	CDS	19785392	19785739	0.42	+	0	transcript_id "Ledus.S1G221000.t1"; gene_id "Ledus.S1G221000"
Ledus.S1	AUGUSTUS	exon	19785392	19785739	.	+	.	transcript_id "Ledus.S1G221000.t1"; gene_id "Ledus.S1G221000"
Ledus.S1	AUGUSTUS	intron	19785740	19785804	.	+	.	transcript_id "Ledus.S1G221000.t1"; gene_id "Ledus.S1G221000"
Ledus.S1	AUGUSTUS	CDS	19785805	19786053	0.45	+	0	transcript_id "Ledus.S1G221000.t1"; gene_id "Ledus.S1G221000"
Ledus.S1	AUGUSTUS	exon	19785805	19786053	.	+	.	transcript_id "Ledus.S1G221000.t1"; gene_id "Ledus.S1G221000"
Ledus.S1	AUGUSTUS	intron	19786054	19786136	.	+	.	transcript_id "Ledus.S1G221000.t1"; gene_id "Ledus.S1G221000"
Ledus.S1	AUGUSTUS	CDS	19786137	19786148	0.96	+	0	transcript_id "Ledus.S1G221000.t1"; gene_id "Ledus.S1G221000"
Ledus.S1	AUGUSTUS	exon	19786137	19786148	.	+	.	transcript_id "Ledus.S1G221000.t1"; gene_id "Ledus.S1G221000"
Ledus.S1	AUGUSTUS	stop_codon	19786149	19786151	.	+	0	transcript_id "Ledus.S1G221000.t1"; gene_id "Ledus.S1G221000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7768.t1 is derived from g12439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6414660	6414866	.	+	.	Ledus.S5G054600
Ledus.S5	AUGUSTUS	transcript	6414660	6414866	.	+	.	transcript_id "Ledus.S5G054600.t1"; gene_id "Ledus.S5G054600"
Ledus.S5	AUGUSTUS	start_codon	6414660	6414662	.	+	0	transcript_id "Ledus.S5G054600.t1"; gene_id "Ledus.S5G054600"
Ledus.S5	AUGUSTUS	CDS	6414660	6414866	0.74	+	0	transcript_id "Ledus.S5G054600.t1"; gene_id "Ledus.S5G054600"
Ledus.S5	AUGUSTUS	exon	6414660	6414866	.	+	.	transcript_id "Ledus.S5G054600.t1"; gene_id "Ledus.S5G054600"
Ledus.S5	AUGUSTUS	stop_codon	6414867	6414869	.	+	0	transcript_id "Ledus.S5G054600.t1"; gene_id "Ledus.S5G054600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9765.t1 is derived from g10795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9657478	9659633	.	+	.	Ledus.S3G124200
Ledus.S3	AUGUSTUS	transcript	9657478	9659633	.	+	.	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	start_codon	9657478	9657480	.	+	0	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	CDS	9657478	9657487	0.44	+	0	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	exon	9657478	9657487	.	+	.	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	intron	9657488	9657716	.	+	.	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	CDS	9657717	9657750	0.53	+	2	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	exon	9657717	9657750	.	+	.	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	intron	9657751	9658049	.	+	.	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	CDS	9658050	9658456	0.98	+	1	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	exon	9658050	9658456	.	+	.	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	intron	9658457	9658610	.	+	.	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	CDS	9658611	9658880	1	+	2	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	exon	9658611	9658880	.	+	.	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	intron	9658881	9658962	.	+	.	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	CDS	9658963	9659633	1	+	2	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	exon	9658963	9659633	.	+	.	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
Ledus.S3	AUGUSTUS	stop_codon	9659634	9659636	.	+	0	transcript_id "Ledus.S3G124200.t1"; gene_id "Ledus.S3G124200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11950.t1 is derived from g5569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7970879	7978843	.	+	.	Ledus.S4G110600
Ledus.S4	AUGUSTUS	transcript	7970879	7978843	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	start_codon	7970879	7970881	.	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7970879	7971189	0.97	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7970879	7971189	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7971190	7971321	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7971322	7971496	1	+	1	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7971322	7971496	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7971497	7971632	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7971633	7971737	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7971633	7971737	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7971738	7971912	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7971913	7972048	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7971913	7972048	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7972049	7972208	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7972209	7972261	1	+	2	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7972209	7972261	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7972262	7972373	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7972374	7972479	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7972374	7972479	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7972480	7972576	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7972577	7972713	1	+	2	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7972577	7972713	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7972714	7972880	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7972881	7973080	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7972881	7973080	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7973081	7973203	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7973204	7973353	0.98	+	1	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7973204	7973353	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7973354	7973476	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7973477	7973537	1	+	1	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7973477	7973537	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7973538	7973721	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7973722	7973842	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7973722	7973842	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7973843	7973935	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7973936	7974026	1	+	2	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7973936	7974026	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7974027	7974162	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7974163	7974256	1	+	1	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7974163	7974256	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7974257	7974407	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7974408	7974503	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7974408	7974503	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7974504	7974603	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7974604	7974744	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7974604	7974744	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7974745	7974848	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7974849	7974899	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7974849	7974899	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7974900	7974996	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7974997	7975067	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7974997	7975067	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7975068	7975265	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7975266	7975358	1	+	1	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7975266	7975358	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7975359	7975489	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7975490	7975580	1	+	1	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7975490	7975580	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7975581	7975685	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7975686	7975757	0.52	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7975686	7975757	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7975758	7975862	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7975863	7975919	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7975863	7975919	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7975920	7976051	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7976052	7976120	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7976052	7976120	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7976121	7976263	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7976264	7976320	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7976264	7976320	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7976321	7976433	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7976434	7976508	0.69	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7976434	7976508	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7976509	7976595	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7976596	7976684	0.99	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7976596	7976684	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7976685	7976792	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7976793	7976870	1	+	1	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7976793	7976870	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7976871	7976992	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7976993	7977131	0.98	+	1	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7976993	7977131	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7977132	7977235	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7977236	7977345	0.83	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7977236	7977345	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7977346	7977417	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7977418	7977517	0.98	+	1	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7977418	7977517	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7977518	7977627	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7977628	7977711	0.9	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7977628	7977711	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7977712	7977936	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7977937	7977982	0.98	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7977937	7977982	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7977983	7978221	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7978222	7978256	1	+	2	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7978222	7978256	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7978257	7978512	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7978513	7978609	1	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7978513	7978609	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	intron	7978610	7978808	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	CDS	7978809	7978843	1	+	2	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	exon	7978809	7978843	.	+	.	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
Ledus.S4	AUGUSTUS	stop_codon	7978844	7978846	.	+	0	transcript_id "Ledus.S4G110600.t1"; gene_id "Ledus.S4G110600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11936.t1 is derived from g5555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7875437	7881164	.	-	.	Ledus.S4G109200
Ledus.S4	AUGUSTUS	transcript	7875437	7881164	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	stop_codon	7875434	7875436	.	-	0	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7875437	7875468	0.72	-	2	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7875437	7875468	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	intron	7875469	7875832	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7875833	7876199	0.72	-	0	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7875833	7876199	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	intron	7876200	7876302	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7876303	7876519	1	-	1	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7876303	7876519	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	intron	7876520	7876608	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7876609	7879431	1	-	1	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7876609	7879431	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	intron	7879432	7879527	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7879528	7879572	0.97	-	1	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7879528	7879572	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	intron	7879573	7879678	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7879679	7879745	1	-	2	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7879679	7879745	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	intron	7879746	7879919	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7879920	7880004	1	-	0	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7879920	7880004	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	intron	7880005	7880124	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7880125	7880226	0.97	-	0	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7880125	7880226	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	intron	7880227	7880332	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7880333	7880437	0.74	-	0	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7880333	7880437	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	intron	7880438	7880572	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7880573	7880662	1	-	0	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7880573	7880662	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	intron	7880663	7880754	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7880755	7880801	1	-	2	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7880755	7880801	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	intron	7880802	7880875	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7880876	7880966	1	-	0	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7880876	7880966	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	intron	7880967	7881104	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	CDS	7881105	7881164	0.88	-	0	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	exon	7881105	7881164	.	-	.	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
Ledus.S4	AUGUSTUS	start_codon	7881162	7881164	.	-	0	transcript_id "Ledus.S4G109200.t1"; gene_id "Ledus.S4G109200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6249.t1 is derived from g3692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29899444	29902381	.	+	.	Ledus.S1G367000
Ledus.S1	AUGUSTUS	transcript	29899444	29902381	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	start_codon	29899444	29899446	.	+	0	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	CDS	29899444	29899762	0.99	+	0	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	exon	29899444	29899762	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	intron	29899763	29899842	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	CDS	29899843	29899922	1	+	2	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	exon	29899843	29899922	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	intron	29899923	29900016	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	CDS	29900017	29900306	1	+	0	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	exon	29900017	29900306	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	intron	29900307	29900382	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	CDS	29900383	29900764	0.76	+	1	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	exon	29900383	29900764	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	intron	29900765	29900853	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	CDS	29900854	29900985	1	+	0	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	exon	29900854	29900985	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	intron	29900986	29901097	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	CDS	29901098	29901295	0.6	+	0	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	exon	29901098	29901295	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	intron	29901296	29901370	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	CDS	29901371	29901457	1	+	0	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	exon	29901371	29901457	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	intron	29901458	29901548	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	CDS	29901549	29901821	0.99	+	0	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	exon	29901549	29901821	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	intron	29901822	29901898	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	CDS	29901899	29902006	0.98	+	0	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	exon	29901899	29902006	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	intron	29902007	29902105	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	CDS	29902106	29902381	0.92	+	0	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	exon	29902106	29902381	.	+	.	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
Ledus.S1	AUGUSTUS	stop_codon	29902382	29902384	.	+	0	transcript_id "Ledus.S1G367000.t1"; gene_id "Ledus.S1G367000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10626.t1 is derived from g11656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16563955	16569426	.	+	.	Ledus.S3G210300
Ledus.S3	AUGUSTUS	transcript	16563955	16569426	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	start_codon	16563955	16563957	.	+	0	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16563955	16564020	0.94	+	0	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16563955	16564020	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16564021	16564148	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16564149	16564480	0.8	+	0	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16564149	16564480	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16564481	16564678	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16564679	16564782	1	+	1	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16564679	16564782	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16564783	16565031	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16565032	16565100	0.81	+	2	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16565032	16565100	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16565101	16565218	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16565219	16565279	1	+	2	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16565219	16565279	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16565280	16565419	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16565420	16565559	1	+	1	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16565420	16565559	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16565560	16565838	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16565839	16566028	0.9	+	2	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16565839	16566028	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16566029	16566137	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16566138	16566199	1	+	1	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16566138	16566199	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16566200	16566329	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16566330	16566418	1	+	2	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16566330	16566418	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16566419	16566512	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16566513	16566585	1	+	0	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16566513	16566585	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16566586	16566660	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16566661	16566720	1	+	2	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16566661	16566720	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16566721	16566945	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16566946	16567092	1	+	2	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16566946	16567092	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16567093	16567186	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16567187	16567231	1	+	2	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16567187	16567231	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16567232	16567371	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16567372	16567433	1	+	2	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16567372	16567433	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16567434	16567577	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16567578	16567664	1	+	0	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16567578	16567664	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16567665	16567809	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16567810	16567975	1	+	0	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16567810	16567975	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16567976	16568140	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16568141	16568218	0.99	+	2	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16568141	16568218	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16568219	16568334	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16568335	16568471	0.97	+	2	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16568335	16568471	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16568472	16568736	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16568737	16568813	0.98	+	0	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16568737	16568813	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16568814	16568918	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16568919	16568988	1	+	1	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16568919	16568988	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16568989	16569127	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16569128	16569193	0.93	+	0	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16569128	16569193	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	intron	16569194	16569297	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	CDS	16569298	16569426	0.96	+	0	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	exon	16569298	16569426	.	+	.	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
Ledus.S3	AUGUSTUS	stop_codon	16569427	16569429	.	+	0	transcript_id "Ledus.S3G210300.t1"; gene_id "Ledus.S3G210300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5478.t1 is derived from g2917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24481781	24482452	.	+	.	Ledus.S1G289900
Ledus.S1	AUGUSTUS	transcript	24481781	24482452	.	+	.	transcript_id "Ledus.S1G289900.t1"; gene_id "Ledus.S1G289900"
Ledus.S1	AUGUSTUS	start_codon	24481781	24481783	.	+	0	transcript_id "Ledus.S1G289900.t1"; gene_id "Ledus.S1G289900"
Ledus.S1	AUGUSTUS	CDS	24481781	24482038	0.94	+	0	transcript_id "Ledus.S1G289900.t1"; gene_id "Ledus.S1G289900"
Ledus.S1	AUGUSTUS	exon	24481781	24482038	.	+	.	transcript_id "Ledus.S1G289900.t1"; gene_id "Ledus.S1G289900"
Ledus.S1	AUGUSTUS	intron	24482039	24482126	.	+	.	transcript_id "Ledus.S1G289900.t1"; gene_id "Ledus.S1G289900"
Ledus.S1	AUGUSTUS	CDS	24482127	24482194	1	+	0	transcript_id "Ledus.S1G289900.t1"; gene_id "Ledus.S1G289900"
Ledus.S1	AUGUSTUS	exon	24482127	24482194	.	+	.	transcript_id "Ledus.S1G289900.t1"; gene_id "Ledus.S1G289900"
Ledus.S1	AUGUSTUS	intron	24482195	24482289	.	+	.	transcript_id "Ledus.S1G289900.t1"; gene_id "Ledus.S1G289900"
Ledus.S1	AUGUSTUS	CDS	24482290	24482452	0.97	+	1	transcript_id "Ledus.S1G289900.t1"; gene_id "Ledus.S1G289900"
Ledus.S1	AUGUSTUS	exon	24482290	24482452	.	+	.	transcript_id "Ledus.S1G289900.t1"; gene_id "Ledus.S1G289900"
Ledus.S1	AUGUSTUS	stop_codon	24482453	24482455	.	+	0	transcript_id "Ledus.S1G289900.t1"; gene_id "Ledus.S1G289900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9210.t1 is derived from g10240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5422592	5423584	.	+	.	Ledus.S3G068700
Ledus.S3	AUGUSTUS	transcript	5422592	5423584	.	+	.	transcript_id "Ledus.S3G068700.t1"; gene_id "Ledus.S3G068700"
Ledus.S3	AUGUSTUS	start_codon	5422592	5422594	.	+	0	transcript_id "Ledus.S3G068700.t1"; gene_id "Ledus.S3G068700"
Ledus.S3	AUGUSTUS	CDS	5422592	5423584	0.71	+	0	transcript_id "Ledus.S3G068700.t1"; gene_id "Ledus.S3G068700"
Ledus.S3	AUGUSTUS	exon	5422592	5423584	.	+	.	transcript_id "Ledus.S3G068700.t1"; gene_id "Ledus.S3G068700"
Ledus.S3	AUGUSTUS	stop_codon	5423585	5423587	.	+	0	transcript_id "Ledus.S3G068700.t1"; gene_id "Ledus.S3G068700"
# This transcript jg10340.t2 is derived from g11370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10340.t3 is derived from g11370.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10342.t1 is derived from g11372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14330856	14331823	.	+	.	Ledus.S3G181900
Ledus.S3	AUGUSTUS	transcript	14330856	14331823	.	+	.	transcript_id "Ledus.S3G181900.t1"; gene_id "Ledus.S3G181900"
Ledus.S3	AUGUSTUS	start_codon	14330856	14330858	.	+	0	transcript_id "Ledus.S3G181900.t1"; gene_id "Ledus.S3G181900"
Ledus.S3	AUGUSTUS	CDS	14330856	14330861	0.91	+	0	transcript_id "Ledus.S3G181900.t1"; gene_id "Ledus.S3G181900"
Ledus.S3	AUGUSTUS	exon	14330856	14330861	.	+	.	transcript_id "Ledus.S3G181900.t1"; gene_id "Ledus.S3G181900"
Ledus.S3	AUGUSTUS	intron	14330862	14331018	.	+	.	transcript_id "Ledus.S3G181900.t1"; gene_id "Ledus.S3G181900"
Ledus.S3	AUGUSTUS	CDS	14331019	14331190	0.84	+	0	transcript_id "Ledus.S3G181900.t1"; gene_id "Ledus.S3G181900"
Ledus.S3	AUGUSTUS	exon	14331019	14331190	.	+	.	transcript_id "Ledus.S3G181900.t1"; gene_id "Ledus.S3G181900"
Ledus.S3	AUGUSTUS	intron	14331191	14331272	.	+	.	transcript_id "Ledus.S3G181900.t1"; gene_id "Ledus.S3G181900"
Ledus.S3	AUGUSTUS	CDS	14331273	14331823	0.84	+	2	transcript_id "Ledus.S3G181900.t1"; gene_id "Ledus.S3G181900"
Ledus.S3	AUGUSTUS	exon	14331273	14331823	.	+	.	transcript_id "Ledus.S3G181900.t1"; gene_id "Ledus.S3G181900"
Ledus.S3	AUGUSTUS	stop_codon	14331824	14331826	.	+	0	transcript_id "Ledus.S3G181900.t1"; gene_id "Ledus.S3G181900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4661.t1 is derived from g2099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18817336	18819987	.	+	.	Ledus.S1G208200
Ledus.S1	AUGUSTUS	transcript	18817336	18819987	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	start_codon	18817336	18817338	.	+	0	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	CDS	18817336	18817476	1	+	0	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	exon	18817336	18817476	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	intron	18817477	18817727	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	CDS	18817728	18818021	1	+	0	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	exon	18817728	18818021	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	intron	18818022	18818365	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	CDS	18818366	18818560	1	+	0	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	exon	18818366	18818560	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	intron	18818561	18818651	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	CDS	18818652	18818723	1	+	0	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	exon	18818652	18818723	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	intron	18818724	18818804	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	CDS	18818805	18818852	1	+	0	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	exon	18818805	18818852	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	intron	18818853	18818943	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	CDS	18818944	18819069	1	+	0	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	exon	18818944	18819069	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	intron	18819070	18819155	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	CDS	18819156	18819275	1	+	0	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	exon	18819156	18819275	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	intron	18819276	18819360	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	CDS	18819361	18819569	1	+	0	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	exon	18819361	18819569	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	intron	18819570	18819653	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	CDS	18819654	18819745	1	+	1	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	exon	18819654	18819745	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	intron	18819746	18819823	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	CDS	18819824	18819987	0.95	+	2	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	exon	18819824	18819987	.	+	.	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
Ledus.S1	AUGUSTUS	stop_codon	18819988	18819990	.	+	0	transcript_id "Ledus.S1G208200.t1"; gene_id "Ledus.S1G208200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8431.t1 is derived from g13103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11610567	11611082	.	-	.	Ledus.S5G120900
Ledus.S5	AUGUSTUS	transcript	11610567	11611082	.	-	.	transcript_id "Ledus.S5G120900.t1"; gene_id "Ledus.S5G120900"
Ledus.S5	AUGUSTUS	stop_codon	11610564	11610566	.	-	0	transcript_id "Ledus.S5G120900.t1"; gene_id "Ledus.S5G120900"
Ledus.S5	AUGUSTUS	CDS	11610567	11611082	0.87	-	0	transcript_id "Ledus.S5G120900.t1"; gene_id "Ledus.S5G120900"
Ledus.S5	AUGUSTUS	exon	11610567	11611082	.	-	.	transcript_id "Ledus.S5G120900.t1"; gene_id "Ledus.S5G120900"
Ledus.S5	AUGUSTUS	start_codon	11611080	11611082	.	-	0	transcript_id "Ledus.S5G120900.t1"; gene_id "Ledus.S5G120900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12064.t1 is derived from g5683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9279757	9282272	.	-	.	Ledus.S4G122000
Ledus.S4	AUGUSTUS	transcript	9279757	9282272	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	stop_codon	9279754	9279756	.	-	0	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	CDS	9279757	9279834	0.94	-	0	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	exon	9279757	9279834	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	intron	9279835	9279966	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	CDS	9279967	9280023	1	-	0	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	exon	9279967	9280023	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	intron	9280024	9280161	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	CDS	9280162	9280387	1	-	1	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	exon	9280162	9280387	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	intron	9280388	9280489	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	CDS	9280490	9280617	1	-	0	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	exon	9280490	9280617	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	intron	9280618	9280705	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	CDS	9280706	9280811	1	-	1	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	exon	9280706	9280811	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	intron	9280812	9280921	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	CDS	9280922	9281001	1	-	0	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	exon	9280922	9281001	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	intron	9281002	9281154	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	CDS	9281155	9281252	1	-	2	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	exon	9281155	9281252	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	intron	9281253	9281417	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	CDS	9281418	9281531	0.99	-	2	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	exon	9281418	9281531	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	intron	9281532	9281642	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	CDS	9281643	9281783	1	-	2	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	exon	9281643	9281783	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	intron	9281784	9281862	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	CDS	9281863	9281947	1	-	0	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	exon	9281863	9281947	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	intron	9281948	9282083	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	CDS	9282084	9282272	1	-	0	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	exon	9282084	9282272	.	-	.	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
Ledus.S4	AUGUSTUS	start_codon	9282270	9282272	.	-	0	transcript_id "Ledus.S4G122000.t1"; gene_id "Ledus.S4G122000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg196.t1 is derived from g7057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	749884	752449	.	+	.	Ledus.S2G007800
Ledus.S2	AUGUSTUS	transcript	749884	752449	.	+	.	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	start_codon	749884	749886	.	+	0	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	CDS	749884	749924	0.91	+	0	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	exon	749884	749924	.	+	.	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	intron	749925	750210	.	+	.	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	CDS	750211	750283	0.91	+	1	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	exon	750211	750283	.	+	.	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	intron	750284	751667	.	+	.	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	CDS	751668	751720	0.5	+	0	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	exon	751668	751720	.	+	.	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	intron	751721	751894	.	+	.	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	CDS	751895	751927	0.91	+	1	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	exon	751895	751927	.	+	.	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	intron	751928	752005	.	+	.	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	CDS	752006	752216	0.81	+	1	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	exon	752006	752216	.	+	.	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	intron	752217	752446	.	+	.	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	CDS	752447	752449	1	+	0	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	exon	752447	752449	.	+	.	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
Ledus.S2	AUGUSTUS	stop_codon	752450	752452	.	+	0	transcript_id "Ledus.S2G007800.t1"; gene_id "Ledus.S2G007800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11545.t1 is derived from g5163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5212116	5214806	.	-	.	Ledus.S4G070100
Ledus.S4	AUGUSTUS	transcript	5212116	5214806	.	-	.	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	stop_codon	5212113	5212115	.	-	0	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	CDS	5212116	5214158	0.65	-	0	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	exon	5212116	5214158	.	-	.	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	intron	5214159	5214253	.	-	.	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	CDS	5214254	5214369	0.62	-	2	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	exon	5214254	5214369	.	-	.	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	intron	5214370	5214524	.	-	.	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	CDS	5214525	5214664	0.92	-	1	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	exon	5214525	5214664	.	-	.	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	intron	5214665	5214747	.	-	.	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	CDS	5214748	5214806	0.31	-	0	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	exon	5214748	5214806	.	-	.	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
Ledus.S4	AUGUSTUS	start_codon	5214804	5214806	.	-	0	transcript_id "Ledus.S4G070100.t1"; gene_id "Ledus.S4G070100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1518.t1 is derived from g8379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10675093	10675395	.	-	.	Ledus.S2G140000
Ledus.S2	AUGUSTUS	transcript	10675093	10675395	.	-	.	transcript_id "Ledus.S2G140000.t1"; gene_id "Ledus.S2G140000"
Ledus.S2	AUGUSTUS	stop_codon	10675090	10675092	.	-	0	transcript_id "Ledus.S2G140000.t1"; gene_id "Ledus.S2G140000"
Ledus.S2	AUGUSTUS	CDS	10675093	10675395	0.72	-	0	transcript_id "Ledus.S2G140000.t1"; gene_id "Ledus.S2G140000"
Ledus.S2	AUGUSTUS	exon	10675093	10675395	.	-	.	transcript_id "Ledus.S2G140000.t1"; gene_id "Ledus.S2G140000"
Ledus.S2	AUGUSTUS	start_codon	10675393	10675395	.	-	0	transcript_id "Ledus.S2G140000.t1"; gene_id "Ledus.S2G140000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11011.t1 is derived from g4629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1089607	1091460	.	-	.	Ledus.S4G016700
Ledus.S4	AUGUSTUS	transcript	1089607	1091460	.	-	.	transcript_id "Ledus.S4G016700.t1"; gene_id "Ledus.S4G016700"
Ledus.S4	AUGUSTUS	stop_codon	1089604	1089606	.	-	0	transcript_id "Ledus.S4G016700.t1"; gene_id "Ledus.S4G016700"
Ledus.S4	AUGUSTUS	CDS	1089607	1091460	1	-	0	transcript_id "Ledus.S4G016700.t1"; gene_id "Ledus.S4G016700"
Ledus.S4	AUGUSTUS	exon	1089607	1091460	.	-	.	transcript_id "Ledus.S4G016700.t1"; gene_id "Ledus.S4G016700"
Ledus.S4	AUGUSTUS	start_codon	1091458	1091460	.	-	0	transcript_id "Ledus.S4G016700.t1"; gene_id "Ledus.S4G016700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7698.t1 is derived from g12369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5242893	5243219	.	+	.	Ledus.S5G047600
Ledus.S5	AUGUSTUS	transcript	5242893	5243219	.	+	.	transcript_id "Ledus.S5G047600.t1"; gene_id "Ledus.S5G047600"
Ledus.S5	AUGUSTUS	start_codon	5242893	5242895	.	+	0	transcript_id "Ledus.S5G047600.t1"; gene_id "Ledus.S5G047600"
Ledus.S5	AUGUSTUS	CDS	5242893	5243219	0.87	+	0	transcript_id "Ledus.S5G047600.t1"; gene_id "Ledus.S5G047600"
Ledus.S5	AUGUSTUS	exon	5242893	5243219	.	+	.	transcript_id "Ledus.S5G047600.t1"; gene_id "Ledus.S5G047600"
Ledus.S5	AUGUSTUS	stop_codon	5243220	5243222	.	+	0	transcript_id "Ledus.S5G047600.t1"; gene_id "Ledus.S5G047600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7173.t1 is derived from g6704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1947370	1952322	.	-	.	Ledus.C7G023400
Ledus.C7	AUGUSTUS	transcript	1947370	1952322	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	stop_codon	1947367	1947369	.	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1947370	1948005	0.98	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1947370	1948005	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1948006	1948118	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1948119	1948425	0.99	-	1	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1948119	1948425	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1948426	1948609	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1948610	1948674	1	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1948610	1948674	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1948675	1948796	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1948797	1948856	1	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1948797	1948856	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1948857	1948997	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1948998	1949228	1	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1948998	1949228	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1949229	1949328	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1949329	1949413	1	-	1	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1949329	1949413	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1949414	1949505	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1949506	1949675	0.93	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1949506	1949675	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1949676	1949788	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1949789	1949902	0.92	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1949789	1949902	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1949903	1950022	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1950023	1950122	0.95	-	1	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1950023	1950122	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1950123	1950236	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1950237	1950302	0.93	-	1	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1950237	1950302	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1950303	1950421	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1950422	1950485	0.94	-	2	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1950422	1950485	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1950486	1950597	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1950598	1950671	1	-	1	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1950598	1950671	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1950672	1950826	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1950827	1951143	1	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1950827	1951143	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1951144	1951304	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1951305	1951354	1	-	2	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1951305	1951354	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1951355	1951458	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1951459	1951531	0.92	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1951459	1951531	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1951532	1951648	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1951649	1951741	0.95	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1951649	1951741	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1951742	1951847	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1951848	1951922	0.95	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1951848	1951922	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1951923	1952041	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1952042	1952110	1	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1952042	1952110	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	intron	1952111	1952271	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	CDS	1952272	1952322	0.96	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	exon	1952272	1952322	.	-	.	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
Ledus.C7	AUGUSTUS	start_codon	1952320	1952322	.	-	0	transcript_id "Ledus.C7G023400.t1"; gene_id "Ledus.C7G023400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12334.t1 is derived from g5955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11239482	11240108	.	+	.	Ledus.S4G149000
Ledus.S4	AUGUSTUS	transcript	11239482	11240108	.	+	.	transcript_id "Ledus.S4G149000.t1"; gene_id "Ledus.S4G149000"
Ledus.S4	AUGUSTUS	start_codon	11239482	11239484	.	+	0	transcript_id "Ledus.S4G149000.t1"; gene_id "Ledus.S4G149000"
Ledus.S4	AUGUSTUS	CDS	11239482	11240108	0.97	+	0	transcript_id "Ledus.S4G149000.t1"; gene_id "Ledus.S4G149000"
Ledus.S4	AUGUSTUS	exon	11239482	11240108	.	+	.	transcript_id "Ledus.S4G149000.t1"; gene_id "Ledus.S4G149000"
Ledus.S4	AUGUSTUS	stop_codon	11240109	11240111	.	+	0	transcript_id "Ledus.S4G149000.t1"; gene_id "Ledus.S4G149000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1825.t1 is derived from g8688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12811536	12814029	.	-	.	Ledus.S2G170700
Ledus.S2	AUGUSTUS	transcript	12811536	12814029	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	stop_codon	12811533	12811535	.	-	0	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	CDS	12811536	12811633	1	-	2	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	exon	12811536	12811633	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	intron	12811634	12811731	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	CDS	12811732	12811772	1	-	1	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	exon	12811732	12811772	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	intron	12811773	12811857	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	CDS	12811858	12812095	1	-	2	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	exon	12811858	12812095	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	intron	12812096	12812168	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	CDS	12812169	12812231	1	-	2	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	exon	12812169	12812231	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	intron	12812232	12812311	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	CDS	12812312	12812403	1	-	1	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	exon	12812312	12812403	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	intron	12812404	12812651	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	CDS	12812652	12812754	1	-	2	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	exon	12812652	12812754	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	intron	12812755	12812826	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	CDS	12812827	12813020	1	-	1	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	exon	12812827	12813020	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	intron	12813021	12813113	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	CDS	12813114	12813200	1	-	1	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	exon	12813114	12813200	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	intron	12813201	12813299	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	CDS	12813300	12813428	1	-	1	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	exon	12813300	12813428	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	intron	12813429	12813506	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	CDS	12813507	12813581	1	-	1	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	exon	12813507	12813581	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	intron	12813582	12813693	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	CDS	12813694	12813779	1	-	0	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	exon	12813694	12813779	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	intron	12813780	12813864	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	CDS	12813865	12814029	0.98	-	0	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	exon	12813865	12814029	.	-	.	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
Ledus.S2	AUGUSTUS	start_codon	12814027	12814029	.	-	0	transcript_id "Ledus.S2G170700.t1"; gene_id "Ledus.S2G170700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10125.t1 is derived from g11155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12951086	12952119	.	-	.	Ledus.S3G160200
Ledus.S3	AUGUSTUS	transcript	12951086	12952119	.	-	.	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	stop_codon	12951083	12951085	.	-	0	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	CDS	12951086	12951237	0.92	-	2	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	exon	12951086	12951237	.	-	.	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	intron	12951238	12951342	.	-	.	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	CDS	12951343	12951506	0.73	-	1	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	exon	12951343	12951506	.	-	.	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	intron	12951507	12951644	.	-	.	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	CDS	12951645	12951803	0.73	-	1	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	exon	12951645	12951803	.	-	.	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	intron	12951804	12951887	.	-	.	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	CDS	12951888	12951977	0.56	-	1	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	exon	12951888	12951977	.	-	.	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	intron	12951978	12952066	.	-	.	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	CDS	12952067	12952119	0.35	-	0	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	exon	12952067	12952119	.	-	.	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
Ledus.S3	AUGUSTUS	start_codon	12952117	12952119	.	-	0	transcript_id "Ledus.S3G160200.t1"; gene_id "Ledus.S3G160200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg529.t1 is derived from g7390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3059253	3061506	.	+	.	Ledus.S2G041100
Ledus.S2	AUGUSTUS	transcript	3059253	3061506	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	start_codon	3059253	3059255	.	+	0	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	CDS	3059253	3059266	0.62	+	0	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	exon	3059253	3059266	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	intron	3059267	3059349	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	CDS	3059350	3059401	0.63	+	1	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	exon	3059350	3059401	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	intron	3059402	3059527	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	CDS	3059528	3059685	1	+	0	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	exon	3059528	3059685	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	intron	3059686	3059792	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	CDS	3059793	3060039	0.54	+	1	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	exon	3059793	3060039	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	intron	3060040	3060141	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	CDS	3060142	3060200	0.85	+	0	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	exon	3060142	3060200	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	intron	3060201	3060336	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	CDS	3060337	3060739	1	+	1	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	exon	3060337	3060739	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	intron	3060740	3060832	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	CDS	3060833	3060938	1	+	0	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	exon	3060833	3060938	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	intron	3060939	3061022	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	CDS	3061023	3061114	0.52	+	2	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	exon	3061023	3061114	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	intron	3061115	3061227	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	CDS	3061228	3061296	0.5	+	0	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	exon	3061228	3061296	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	intron	3061297	3061383	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	CDS	3061384	3061506	1	+	0	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	exon	3061384	3061506	.	+	.	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
Ledus.S2	AUGUSTUS	stop_codon	3061507	3061509	.	+	0	transcript_id "Ledus.S2G041100.t1"; gene_id "Ledus.S2G041100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8950.t1 is derived from g9980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3390824	3391228	.	+	.	Ledus.S3G042700
Ledus.S3	AUGUSTUS	transcript	3390824	3391228	.	+	.	transcript_id "Ledus.S3G042700.t1"; gene_id "Ledus.S3G042700"
Ledus.S3	AUGUSTUS	start_codon	3390824	3390826	.	+	0	transcript_id "Ledus.S3G042700.t1"; gene_id "Ledus.S3G042700"
Ledus.S3	AUGUSTUS	CDS	3390824	3391228	0.67	+	0	transcript_id "Ledus.S3G042700.t1"; gene_id "Ledus.S3G042700"
Ledus.S3	AUGUSTUS	exon	3390824	3391228	.	+	.	transcript_id "Ledus.S3G042700.t1"; gene_id "Ledus.S3G042700"
Ledus.S3	AUGUSTUS	stop_codon	3391229	3391231	.	+	0	transcript_id "Ledus.S3G042700.t1"; gene_id "Ledus.S3G042700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1487.t1 is derived from g8348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10538019	10542604	.	+	.	Ledus.S2G136900
Ledus.S2	AUGUSTUS	transcript	10538019	10542604	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	start_codon	10538019	10538021	.	+	0	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10538019	10538197	0.67	+	0	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10538019	10538197	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10538198	10538326	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10538327	10538390	1	+	1	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10538327	10538390	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10538391	10538491	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10538492	10538597	0.97	+	0	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10538492	10538597	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10538598	10538720	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10538721	10538832	1	+	2	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10538721	10538832	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10538833	10538956	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10538957	10539125	0.95	+	1	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10538957	10539125	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10539126	10539246	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10539247	10539381	0.95	+	0	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10539247	10539381	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10539382	10539475	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10539476	10539874	0.81	+	0	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10539476	10539874	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10539875	10539968	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10539969	10540082	0.5	+	0	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10539969	10540082	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10540083	10540185	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10540186	10540434	1	+	0	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10540186	10540434	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10540435	10540519	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10540520	10540740	1	+	0	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10540520	10540740	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10540741	10540895	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10540896	10541154	1	+	1	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10540896	10541154	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10541155	10541249	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10541250	10541482	1	+	0	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10541250	10541482	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10541483	10541581	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10541582	10542149	1	+	1	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10541582	10542149	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	intron	10542150	10542268	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	CDS	10542269	10542604	1	+	0	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	exon	10542269	10542604	.	+	.	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
Ledus.S2	AUGUSTUS	stop_codon	10542605	10542607	.	+	0	transcript_id "Ledus.S2G136900.t1"; gene_id "Ledus.S2G136900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4081.t1 is derived from g1517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14516919	14521172	.	+	.	Ledus.S1G150200
Ledus.S1	AUGUSTUS	transcript	14516919	14521172	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	start_codon	14516919	14516921	.	+	0	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14516919	14517044	1	+	0	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14516919	14517044	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14517045	14517141	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14517142	14517582	1	+	0	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14517142	14517582	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14517583	14517670	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14517671	14517965	1	+	0	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14517671	14517965	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14517966	14518051	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14518052	14518176	1	+	2	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14518052	14518176	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14518177	14518273	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14518274	14518453	1	+	0	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14518274	14518453	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14518454	14518528	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14518529	14518777	1	+	0	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14518529	14518777	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14518778	14518871	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14518872	14519124	1	+	0	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14518872	14519124	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14519125	14519210	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14519211	14519315	1	+	2	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14519211	14519315	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14519316	14519434	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14519435	14519507	1	+	2	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14519435	14519507	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14519508	14519575	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14519576	14519816	1	+	1	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14519576	14519816	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14519817	14519904	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14519905	14520350	0.99	+	0	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14519905	14520350	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14520351	14520441	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14520442	14520559	1	+	1	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14520442	14520559	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14520560	14520649	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14520650	14520841	0.98	+	0	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14520650	14520841	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	intron	14520842	14520935	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	CDS	14520936	14521172	0.86	+	0	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	exon	14520936	14521172	.	+	.	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
Ledus.S1	AUGUSTUS	stop_codon	14521173	14521175	.	+	0	transcript_id "Ledus.S1G150200.t1"; gene_id "Ledus.S1G150200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg730.t1 is derived from g7591.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4564835	4566167	.	+	.	Ledus.S2G061200
Ledus.S2	AUGUSTUS	transcript	4564835	4566167	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	start_codon	4564835	4564837	.	+	0	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	CDS	4564835	4565013	0.75	+	0	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	exon	4564835	4565013	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	intron	4565014	4565086	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	CDS	4565087	4565321	1	+	1	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	exon	4565087	4565321	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	intron	4565322	4565417	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	CDS	4565418	4565504	1	+	0	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	exon	4565418	4565504	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	intron	4565505	4565601	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	CDS	4565602	4565691	1	+	0	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	exon	4565602	4565691	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	intron	4565692	4565771	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	CDS	4565772	4565855	1	+	0	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	exon	4565772	4565855	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	intron	4565856	4565937	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	CDS	4565938	4565986	1	+	0	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	exon	4565938	4565986	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	intron	4565987	4566096	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	CDS	4566097	4566167	1	+	2	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	exon	4566097	4566167	.	+	.	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
Ledus.S2	AUGUSTUS	stop_codon	4566168	4566170	.	+	0	transcript_id "Ledus.S2G061200.t1"; gene_id "Ledus.S2G061200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5880.t1 is derived from g3322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27549082	27551837	.	-	.	Ledus.S1G330100
Ledus.S1	AUGUSTUS	transcript	27549082	27551093	.	-	.	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	stop_codon	27549079	27549081	.	-	0	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27549082	27549207	0.98	-	0	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27549082	27549207	.	-	.	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27549208	27549463	.	-	.	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27549464	27549519	0.45	-	2	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27549464	27549519	.	-	.	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27549520	27549830	.	-	.	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27549831	27550083	0.93	-	0	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27549831	27550083	.	-	.	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27550084	27550171	.	-	.	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27550172	27550244	1	-	1	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27550172	27550244	.	-	.	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27550245	27550398	.	-	.	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27550399	27550525	1	-	2	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27550399	27550525	.	-	.	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27550526	27551077	.	-	.	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27551078	27551093	0.92	-	0	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27551078	27551093	.	-	.	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	start_codon	27551091	27551093	.	-	0	transcript_id "Ledus.S1G330100.t1"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	transcript	27549082	27551837	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	stop_codon	27549079	27549081	.	-	0	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27549082	27549207	0.97	-	0	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27549082	27549207	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27549208	27549463	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27549464	27549519	0.53	-	2	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27549464	27549519	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27549520	27549830	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27549831	27550083	0.94	-	0	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27549831	27550083	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27550084	27550171	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27550172	27550244	1	-	1	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27550172	27550244	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27550245	27550398	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27550399	27550525	1	-	2	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27550399	27550525	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27550526	27550692	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27550693	27550726	0.72	-	0	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27550693	27550726	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27550727	27550874	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27550875	27550926	0.68	-	1	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27550875	27550926	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27550927	27551077	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27551078	27551095	0.79	-	1	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27551078	27551095	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27551096	27551308	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27551309	27551482	0.42	-	1	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27551309	27551482	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	intron	27551483	27551727	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	CDS	27551728	27551837	0.66	-	0	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	exon	27551728	27551837	.	-	.	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
Ledus.S1	AUGUSTUS	start_codon	27551835	27551837	.	-	0	transcript_id "Ledus.S1G330100.t2"; gene_id "Ledus.S1G330100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3865.t1 is derived from g1301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13248297	13255702	.	+	.	Ledus.S1G128600
Ledus.S1	AUGUSTUS	transcript	13248297	13255702	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	start_codon	13248297	13248299	.	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13248297	13248430	0.82	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13248297	13248430	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13248431	13248613	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13248614	13248685	1	+	1	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13248614	13248685	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13248686	13248763	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13248764	13248823	1	+	1	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13248764	13248823	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13248824	13248973	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13248974	13249079	1	+	1	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13248974	13249079	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13249080	13249192	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13249193	13249306	0.84	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13249193	13249306	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13249307	13249551	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13249552	13250046	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13249552	13250046	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13250047	13250173	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13250174	13250323	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13250174	13250323	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13250324	13250454	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13250455	13250541	0.98	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13250455	13250541	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13250542	13250665	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13250666	13250782	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13250666	13250782	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13250783	13250927	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13250928	13251042	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13250928	13251042	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13251043	13251194	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13251195	13251312	1	+	2	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13251195	13251312	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13251313	13251472	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13251473	13251527	1	+	1	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13251473	13251527	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13251528	13251631	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13251632	13251810	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13251632	13251810	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13251811	13251965	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13251966	13252153	1	+	1	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13251966	13252153	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13252154	13252234	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13252235	13252389	1	+	2	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13252235	13252389	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13252390	13252486	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13252487	13252736	0.98	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13252487	13252736	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13252737	13252925	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13252926	13253205	1	+	2	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13252926	13253205	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13253206	13253299	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13253300	13253393	1	+	1	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13253300	13253393	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13253394	13253477	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13253478	13253558	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13253478	13253558	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13253559	13253642	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13253643	13253699	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13253643	13253699	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13253700	13253858	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13253859	13253990	0.99	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13253859	13253990	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13253991	13254089	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13254090	13254170	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13254090	13254170	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13254171	13254272	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13254273	13254381	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13254273	13254381	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13254382	13254457	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13254458	13254594	1	+	2	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13254458	13254594	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13254595	13254693	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13254694	13254813	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13254694	13254813	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13254814	13254978	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13254979	13255052	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13254979	13255052	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13255053	13255167	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13255168	13255273	1	+	1	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13255168	13255273	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13255274	13255363	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13255364	13255486	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13255364	13255486	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13255487	13255576	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13255577	13255702	1	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13255577	13255702	.	+	.	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	stop_codon	13255703	13255705	.	+	0	transcript_id "Ledus.S1G128600.t1"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	transcript	13248297	13251994	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	start_codon	13248297	13248299	.	+	0	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13248297	13248430	0.83	+	0	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13248297	13248430	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13248431	13248613	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13248614	13248685	1	+	1	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13248614	13248685	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13248686	13248763	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13248764	13248823	1	+	1	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13248764	13248823	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13248824	13248973	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13248974	13249079	1	+	1	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13248974	13249079	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13249080	13249192	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13249193	13249306	0.88	+	0	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13249193	13249306	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13249307	13249551	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13249552	13250046	1	+	0	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13249552	13250046	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13250047	13250173	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13250174	13250323	1	+	0	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13250174	13250323	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13250324	13250454	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13250455	13250541	0.98	+	0	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13250455	13250541	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13250542	13250665	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13250666	13250782	1	+	0	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13250666	13250782	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13250783	13250927	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13250928	13251042	1	+	0	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13250928	13251042	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13251043	13251194	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13251195	13251312	1	+	2	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13251195	13251312	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13251313	13251472	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13251473	13251527	1	+	1	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13251473	13251527	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13251528	13251631	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13251632	13251810	0.98	+	0	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13251632	13251810	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	intron	13251811	13251978	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	CDS	13251979	13251994	0.64	+	1	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	exon	13251979	13251994	.	+	.	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
Ledus.S1	AUGUSTUS	stop_codon	13251995	13251997	.	+	0	transcript_id "Ledus.S1G128600.t2"; gene_id "Ledus.S1G128600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3635.t1 is derived from g1071.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10318959	10320643	.	-	.	Ledus.S1G105600
Ledus.S1	AUGUSTUS	transcript	10318959	10320643	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	stop_codon	10318956	10318958	.	-	0	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	CDS	10318959	10319118	0.58	-	1	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	exon	10318959	10319118	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	intron	10319119	10319207	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	CDS	10319208	10319326	1	-	0	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	exon	10319208	10319326	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	intron	10319327	10319409	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	CDS	10319410	10319499	1	-	0	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	exon	10319410	10319499	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	intron	10319500	10319576	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	CDS	10319577	10319669	1	-	0	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	exon	10319577	10319669	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	intron	10319670	10319862	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	CDS	10319863	10319934	1	-	0	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	exon	10319863	10319934	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	intron	10319935	10320018	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	CDS	10320019	10320079	1	-	1	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	exon	10320019	10320079	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	intron	10320080	10320159	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	CDS	10320160	10320257	1	-	0	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	exon	10320160	10320257	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	intron	10320258	10320335	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	CDS	10320336	10320419	1	-	0	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	exon	10320336	10320419	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	intron	10320420	10320499	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	CDS	10320500	10320643	0.8	-	0	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	exon	10320500	10320643	.	-	.	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
Ledus.S1	AUGUSTUS	start_codon	10320641	10320643	.	-	0	transcript_id "Ledus.S1G105600.t1"; gene_id "Ledus.S1G105600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11377.t1 is derived from g4995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3882075	3882387	.	+	.	Ledus.S4G053300
Ledus.S4	AUGUSTUS	transcript	3882075	3882387	.	+	.	transcript_id "Ledus.S4G053300.t1"; gene_id "Ledus.S4G053300"
Ledus.S4	AUGUSTUS	start_codon	3882075	3882077	.	+	0	transcript_id "Ledus.S4G053300.t1"; gene_id "Ledus.S4G053300"
Ledus.S4	AUGUSTUS	CDS	3882075	3882268	1	+	0	transcript_id "Ledus.S4G053300.t1"; gene_id "Ledus.S4G053300"
Ledus.S4	AUGUSTUS	exon	3882075	3882268	.	+	.	transcript_id "Ledus.S4G053300.t1"; gene_id "Ledus.S4G053300"
Ledus.S4	AUGUSTUS	intron	3882269	3882359	.	+	.	transcript_id "Ledus.S4G053300.t1"; gene_id "Ledus.S4G053300"
Ledus.S4	AUGUSTUS	CDS	3882360	3882387	1	+	1	transcript_id "Ledus.S4G053300.t1"; gene_id "Ledus.S4G053300"
Ledus.S4	AUGUSTUS	exon	3882360	3882387	.	+	.	transcript_id "Ledus.S4G053300.t1"; gene_id "Ledus.S4G053300"
Ledus.S4	AUGUSTUS	stop_codon	3882388	3882390	.	+	0	transcript_id "Ledus.S4G053300.t1"; gene_id "Ledus.S4G053300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8576.t1 is derived from g9606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	271844	273370	.	-	.	Ledus.S3G005300
Ledus.S3	AUGUSTUS	transcript	271844	273370	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	stop_codon	271841	271843	.	-	0	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	CDS	271844	271933	1	-	0	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	exon	271844	271933	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	intron	271934	272015	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	CDS	272016	272072	1	-	0	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	exon	272016	272072	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	intron	272073	272173	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	CDS	272174	272299	1	-	0	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	exon	272174	272299	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	intron	272300	272394	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	CDS	272395	272529	1	-	0	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	exon	272395	272529	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	intron	272530	272623	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	CDS	272624	272695	1	-	0	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	exon	272624	272695	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	intron	272696	272774	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	CDS	272775	272837	1	-	0	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	exon	272775	272837	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	intron	272838	272914	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	CDS	272915	273370	0.82	-	0	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	exon	272915	273370	.	-	.	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
Ledus.S3	AUGUSTUS	start_codon	273368	273370	.	-	0	transcript_id "Ledus.S3G005300.t1"; gene_id "Ledus.S3G005300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9664.t1 is derived from g10694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8867563	8869496	.	+	.	Ledus.S3G114100
Ledus.S3	AUGUSTUS	transcript	8867563	8869496	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	start_codon	8867563	8867565	.	+	0	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	CDS	8867563	8868156	0.86	+	0	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	exon	8867563	8868156	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	intron	8868157	8868332	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	CDS	8868333	8868410	1	+	0	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	exon	8868333	8868410	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	intron	8868411	8868587	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	CDS	8868588	8868730	1	+	0	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	exon	8868588	8868730	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	intron	8868731	8868817	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	CDS	8868818	8868888	1	+	1	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	exon	8868818	8868888	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	intron	8868889	8869038	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	CDS	8869039	8869146	1	+	2	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	exon	8869039	8869146	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	intron	8869147	8869238	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	CDS	8869239	8869331	1	+	2	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	exon	8869239	8869331	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	intron	8869332	8869416	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	CDS	8869417	8869496	1	+	2	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	exon	8869417	8869496	.	+	.	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
Ledus.S3	AUGUSTUS	stop_codon	8869497	8869499	.	+	0	transcript_id "Ledus.S3G114100.t1"; gene_id "Ledus.S3G114100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8241.t1 is derived from g12912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10103944	10106148	.	+	.	Ledus.S5G101900
Ledus.S5	AUGUSTUS	transcript	10103944	10106148	.	+	.	transcript_id "Ledus.S5G101900.t1"; gene_id "Ledus.S5G101900"
Ledus.S5	AUGUSTUS	start_codon	10103944	10103946	.	+	0	transcript_id "Ledus.S5G101900.t1"; gene_id "Ledus.S5G101900"
Ledus.S5	AUGUSTUS	CDS	10103944	10106148	0.94	+	0	transcript_id "Ledus.S5G101900.t1"; gene_id "Ledus.S5G101900"
Ledus.S5	AUGUSTUS	exon	10103944	10106148	.	+	.	transcript_id "Ledus.S5G101900.t1"; gene_id "Ledus.S5G101900"
Ledus.S5	AUGUSTUS	stop_codon	10106149	10106151	.	+	0	transcript_id "Ledus.S5G101900.t1"; gene_id "Ledus.S5G101900"
# This transcript jg8940.t2 is derived from g9970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8941.t1 is derived from g9971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3331953	3335098	.	+	.	Ledus.S3G041800
Ledus.S3	AUGUSTUS	transcript	3331953	3335098	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	start_codon	3331953	3331955	.	+	0	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3331953	3332052	0.91	+	0	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3331953	3332052	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	intron	3332053	3332166	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3332167	3332240	1	+	2	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3332167	3332240	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	intron	3332241	3332428	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3332429	3332588	1	+	0	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3332429	3332588	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	intron	3332589	3332690	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3332691	3332715	1	+	2	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3332691	3332715	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	intron	3332716	3332811	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3332812	3332901	1	+	1	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3332812	3332901	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	intron	3332902	3333013	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3333014	3333185	1	+	1	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3333014	3333185	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	intron	3333186	3333317	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3333318	3333391	1	+	0	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3333318	3333391	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	intron	3333392	3333473	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3333474	3333543	1	+	1	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3333474	3333543	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	intron	3333544	3333669	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3333670	3333741	0.98	+	0	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3333670	3333741	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	intron	3333742	3333853	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3333854	3333984	0.98	+	0	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3333854	3333984	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	intron	3333985	3334065	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3334066	3334139	0.61	+	1	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3334066	3334139	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	intron	3334140	3334329	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3334330	3334414	0.11	+	2	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3334330	3334414	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	intron	3334415	3335037	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	CDS	3335038	3335098	0.19	+	1	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	exon	3335038	3335098	.	+	.	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
Ledus.S3	AUGUSTUS	stop_codon	3335099	3335101	.	+	0	transcript_id "Ledus.S3G041800.t1"; gene_id "Ledus.S3G041800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3088.t1 is derived from g523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5809837	5811813	.	+	.	Ledus.S1G050900
Ledus.S1	AUGUSTUS	transcript	5809837	5811813	.	+	.	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	start_codon	5809837	5809839	.	+	0	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	CDS	5809837	5810014	0.96	+	0	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	exon	5809837	5810014	.	+	.	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	intron	5810015	5810094	.	+	.	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	CDS	5810095	5810312	1	+	2	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	exon	5810095	5810312	.	+	.	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	intron	5810313	5810398	.	+	.	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	CDS	5810399	5810910	1	+	0	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	exon	5810399	5810910	.	+	.	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	intron	5810911	5810981	.	+	.	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	CDS	5810982	5811813	1	+	1	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	exon	5810982	5811813	.	+	.	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
Ledus.S1	AUGUSTUS	stop_codon	5811814	5811816	.	+	0	transcript_id "Ledus.S1G050900.t1"; gene_id "Ledus.S1G050900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7583.t1 is derived from g12254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4187271	4188533	.	-	.	Ledus.S5G036100
Ledus.S5	AUGUSTUS	transcript	4187271	4188533	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	stop_codon	4187268	4187270	.	-	0	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	CDS	4187271	4187420	0.92	-	0	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	exon	4187271	4187420	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	intron	4187421	4187551	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	CDS	4187552	4187630	1	-	1	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	exon	4187552	4187630	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	intron	4187631	4187722	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	CDS	4187723	4187818	1	-	1	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	exon	4187723	4187818	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	intron	4187819	4187911	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	CDS	4187912	4188042	1	-	0	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	exon	4187912	4188042	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	intron	4188043	4188128	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	CDS	4188129	4188203	1	-	0	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	exon	4188129	4188203	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	intron	4188204	4188272	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	CDS	4188273	4188354	1	-	1	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	exon	4188273	4188354	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	intron	4188355	4188441	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	CDS	4188442	4188533	0.57	-	0	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	exon	4188442	4188533	.	-	.	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
Ledus.S5	AUGUSTUS	start_codon	4188531	4188533	.	-	0	transcript_id "Ledus.S5G036100.t1"; gene_id "Ledus.S5G036100"
# This transcript jg3267.t2 is derived from g702.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3268.t1 is derived from g703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7193363	7195283	.	+	.	Ledus.S1G068900
Ledus.S1	AUGUSTUS	transcript	7193363	7195283	.	+	.	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	start_codon	7193363	7193365	.	+	0	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	CDS	7193363	7193438	0.6	+	0	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	exon	7193363	7193438	.	+	.	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	intron	7193439	7193528	.	+	.	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	CDS	7193529	7193908	1	+	2	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	exon	7193529	7193908	.	+	.	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	intron	7193909	7193994	.	+	.	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	CDS	7193995	7194310	0.99	+	0	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	exon	7193995	7194310	.	+	.	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	intron	7194311	7194383	.	+	.	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	CDS	7194384	7194652	1	+	2	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	exon	7194384	7194652	.	+	.	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	intron	7194653	7194746	.	+	.	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	CDS	7194747	7195283	0.94	+	0	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	exon	7194747	7195283	.	+	.	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
Ledus.S1	AUGUSTUS	stop_codon	7195284	7195286	.	+	0	transcript_id "Ledus.S1G068900.t1"; gene_id "Ledus.S1G068900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg557.t1 is derived from g7418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3340017	3340579	.	+	.	Ledus.S2G043900
Ledus.S2	AUGUSTUS	transcript	3340017	3340579	.	+	.	transcript_id "Ledus.S2G043900.t1"; gene_id "Ledus.S2G043900"
Ledus.S2	AUGUSTUS	start_codon	3340017	3340019	.	+	0	transcript_id "Ledus.S2G043900.t1"; gene_id "Ledus.S2G043900"
Ledus.S2	AUGUSTUS	CDS	3340017	3340168	0.44	+	0	transcript_id "Ledus.S2G043900.t1"; gene_id "Ledus.S2G043900"
Ledus.S2	AUGUSTUS	exon	3340017	3340168	.	+	.	transcript_id "Ledus.S2G043900.t1"; gene_id "Ledus.S2G043900"
Ledus.S2	AUGUSTUS	intron	3340169	3340365	.	+	.	transcript_id "Ledus.S2G043900.t1"; gene_id "Ledus.S2G043900"
Ledus.S2	AUGUSTUS	CDS	3340366	3340579	0.69	+	1	transcript_id "Ledus.S2G043900.t1"; gene_id "Ledus.S2G043900"
Ledus.S2	AUGUSTUS	exon	3340366	3340579	.	+	.	transcript_id "Ledus.S2G043900.t1"; gene_id "Ledus.S2G043900"
Ledus.S2	AUGUSTUS	stop_codon	3340580	3340582	.	+	0	transcript_id "Ledus.S2G043900.t1"; gene_id "Ledus.S2G043900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5154.t1 is derived from g2593.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21995023	21995704	.	-	.	Ledus.S1G257500
Ledus.S1	AUGUSTUS	transcript	21995023	21995704	.	-	.	transcript_id "Ledus.S1G257500.t1"; gene_id "Ledus.S1G257500"
Ledus.S1	AUGUSTUS	stop_codon	21995020	21995022	.	-	0	transcript_id "Ledus.S1G257500.t1"; gene_id "Ledus.S1G257500"
Ledus.S1	AUGUSTUS	CDS	21995023	21995058	0.71	-	0	transcript_id "Ledus.S1G257500.t1"; gene_id "Ledus.S1G257500"
Ledus.S1	AUGUSTUS	exon	21995023	21995058	.	-	.	transcript_id "Ledus.S1G257500.t1"; gene_id "Ledus.S1G257500"
Ledus.S1	AUGUSTUS	intron	21995059	21995198	.	-	.	transcript_id "Ledus.S1G257500.t1"; gene_id "Ledus.S1G257500"
Ledus.S1	AUGUSTUS	CDS	21995199	21995397	1	-	1	transcript_id "Ledus.S1G257500.t1"; gene_id "Ledus.S1G257500"
Ledus.S1	AUGUSTUS	exon	21995199	21995397	.	-	.	transcript_id "Ledus.S1G257500.t1"; gene_id "Ledus.S1G257500"
Ledus.S1	AUGUSTUS	intron	21995398	21995675	.	-	.	transcript_id "Ledus.S1G257500.t1"; gene_id "Ledus.S1G257500"
Ledus.S1	AUGUSTUS	CDS	21995676	21995704	0.87	-	0	transcript_id "Ledus.S1G257500.t1"; gene_id "Ledus.S1G257500"
Ledus.S1	AUGUSTUS	exon	21995676	21995704	.	-	.	transcript_id "Ledus.S1G257500.t1"; gene_id "Ledus.S1G257500"
Ledus.S1	AUGUSTUS	start_codon	21995702	21995704	.	-	0	transcript_id "Ledus.S1G257500.t1"; gene_id "Ledus.S1G257500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12713.t1 is derived from g6335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14037000	14041582	.	-	.	Ledus.S4G186900
Ledus.S4	AUGUSTUS	transcript	14037000	14041582	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	stop_codon	14036997	14036999	.	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14037000	14037068	1	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14037000	14037068	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14037069	14037256	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14037257	14037415	1	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14037257	14037415	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14037416	14037496	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14037497	14037619	1	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14037497	14037619	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14037620	14037735	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14037736	14037798	1	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14037736	14037798	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14037799	14038192	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14038193	14038297	1	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14038193	14038297	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14038298	14038529	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14038530	14038629	1	-	1	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14038530	14038629	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14038630	14038707	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14038708	14038778	1	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14038708	14038778	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14038779	14039482	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14039483	14039539	1	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14039483	14039539	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14039540	14039970	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14039971	14040048	1	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14039971	14040048	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14040049	14040181	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14040182	14040256	1	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14040182	14040256	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14040257	14040374	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14040375	14040425	1	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14040375	14040425	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14040426	14040581	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14040582	14040661	1	-	2	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14040582	14040661	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14040662	14040757	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14040758	14040861	1	-	1	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14040758	14040861	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14040862	14040952	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14040953	14041041	1	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14040953	14041041	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14041042	14041219	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14041220	14041582	0.79	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14041220	14041582	.	-	.	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	start_codon	14041580	14041582	.	-	0	transcript_id "Ledus.S4G186900.t1"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	transcript	14037000	14041582	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	stop_codon	14036997	14036999	.	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14037000	14037068	1	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14037000	14037068	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14037069	14037256	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14037257	14037415	1	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14037257	14037415	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14037416	14037496	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14037497	14037619	1	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14037497	14037619	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14037620	14037735	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14037736	14037798	1	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14037736	14037798	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14037799	14038192	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14038193	14038297	1	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14038193	14038297	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14038298	14038382	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14038383	14038407	0.64	-	1	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14038383	14038407	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14038408	14038569	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14038570	14038629	0.64	-	1	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14038570	14038629	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14038630	14038707	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14038708	14038778	1	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14038708	14038778	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14038779	14039482	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14039483	14039539	1	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14039483	14039539	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14039540	14039970	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14039971	14040048	1	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14039971	14040048	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14040049	14040181	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14040182	14040256	1	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14040182	14040256	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14040257	14040374	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14040375	14040425	1	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14040375	14040425	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14040426	14040581	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14040582	14040661	1	-	2	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14040582	14040661	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14040662	14040757	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14040758	14040861	1	-	1	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14040758	14040861	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14040862	14040952	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14040953	14041041	1	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14040953	14041041	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	intron	14041042	14041219	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	CDS	14041220	14041582	0.79	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	exon	14041220	14041582	.	-	.	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
Ledus.S4	AUGUSTUS	start_codon	14041580	14041582	.	-	0	transcript_id "Ledus.S4G186900.t2"; gene_id "Ledus.S4G186900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2731.t1 is derived from g165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2673386	2675235	.	-	.	Ledus.S1G015200
Ledus.S1	AUGUSTUS	transcript	2673386	2675235	.	-	.	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	stop_codon	2673383	2673385	.	-	0	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	CDS	2673386	2673638	1	-	1	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	exon	2673386	2673638	.	-	.	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	intron	2673639	2673713	.	-	.	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	CDS	2673714	2674081	1	-	0	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	exon	2673714	2674081	.	-	.	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	intron	2674082	2674152	.	-	.	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	CDS	2674153	2674434	1	-	0	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	exon	2674153	2674434	.	-	.	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	intron	2674435	2674525	.	-	.	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	CDS	2674526	2674769	1	-	1	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	exon	2674526	2674769	.	-	.	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	intron	2674770	2674837	.	-	.	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	CDS	2674838	2675235	0.84	-	0	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	exon	2674838	2675235	.	-	.	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
Ledus.S1	AUGUSTUS	start_codon	2675233	2675235	.	-	0	transcript_id "Ledus.S1G015200.t1"; gene_id "Ledus.S1G015200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10466.t1 is derived from g11496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15444683	15445953	.	+	.	Ledus.S3G194300
Ledus.S3	AUGUSTUS	transcript	15444683	15445953	.	+	.	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	start_codon	15444683	15444685	.	+	0	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	CDS	15444683	15444860	1	+	0	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	exon	15444683	15444860	.	+	.	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	intron	15444861	15445020	.	+	.	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	CDS	15445021	15445069	1	+	2	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	exon	15445021	15445069	.	+	.	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	intron	15445070	15445295	.	+	.	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	CDS	15445296	15445455	1	+	1	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	exon	15445296	15445455	.	+	.	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	intron	15445456	15445560	.	+	.	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	CDS	15445561	15445650	1	+	0	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	exon	15445561	15445650	.	+	.	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	intron	15445651	15445851	.	+	.	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	CDS	15445852	15445953	1	+	0	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	exon	15445852	15445953	.	+	.	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
Ledus.S3	AUGUSTUS	stop_codon	15445954	15445956	.	+	0	transcript_id "Ledus.S3G194300.t1"; gene_id "Ledus.S3G194300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1826.t1 is derived from g8689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12814419	12821079	.	-	.	Ledus.S2G170800
Ledus.S2	AUGUSTUS	transcript	12814419	12821079	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	stop_codon	12814416	12814418	.	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12814419	12814562	0.97	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12814419	12814562	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12814563	12814744	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12814745	12815086	0.99	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12814745	12815086	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12815087	12815283	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12815284	12815352	1	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12815284	12815352	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12815353	12815491	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12815492	12815620	1	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12815492	12815620	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12815621	12815896	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12815897	12816058	1	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12815897	12816058	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12816059	12816624	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12816625	12816745	1	-	1	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12816625	12816745	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12816746	12816853	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12816854	12816969	0.99	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12816854	12816969	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12816970	12817083	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12817084	12817149	0.82	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12817084	12817149	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12817150	12817266	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12817267	12817348	1	-	1	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12817267	12817348	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12817349	12817523	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12817524	12817615	1	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12817524	12817615	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12817616	12817753	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12817754	12817861	1	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12817754	12817861	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12817862	12818006	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12818007	12818093	1	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12818007	12818093	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12818094	12818212	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12818213	12818307	1	-	2	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12818213	12818307	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12818308	12818491	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12818492	12818634	1	-	1	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12818492	12818634	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12818635	12819054	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12819055	12819083	1	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12819055	12819083	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12819084	12819230	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12819231	12819350	1	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12819231	12819350	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12819351	12819434	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12819435	12819524	1	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12819435	12819524	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12819525	12819806	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12819807	12819872	1	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12819807	12819872	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12819873	12820059	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12820060	12820173	1	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12820060	12820173	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12820174	12820989	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12820990	12821079	0.93	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12820990	12821079	.	-	.	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	start_codon	12821077	12821079	.	-	0	transcript_id "Ledus.S2G170800.t1"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	transcript	12814462	12821079	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	stop_codon	12814459	12814461	.	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12814462	12814562	1	-	2	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12814462	12814562	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12814563	12814640	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12814641	12814744	0.97	-	1	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12814641	12814744	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12814745	12814841	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12814842	12815086	0.97	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12814842	12815086	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12815087	12815283	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12815284	12815352	1	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12815284	12815352	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12815353	12815491	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12815492	12815620	1	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12815492	12815620	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12815621	12815896	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12815897	12816058	1	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12815897	12816058	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12816059	12816624	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12816625	12816745	1	-	1	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12816625	12816745	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12816746	12816853	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12816854	12816969	0.95	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12816854	12816969	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12816970	12817083	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12817084	12817149	0.81	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12817084	12817149	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12817150	12817266	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12817267	12817348	1	-	1	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12817267	12817348	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12817349	12817523	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12817524	12817615	1	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12817524	12817615	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12817616	12817753	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12817754	12817861	1	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12817754	12817861	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12817862	12818006	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12818007	12818093	1	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12818007	12818093	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12818094	12818212	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12818213	12818307	1	-	2	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12818213	12818307	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12818308	12818491	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12818492	12818634	1	-	1	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12818492	12818634	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12818635	12819054	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12819055	12819083	1	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12819055	12819083	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12819084	12819230	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12819231	12819350	1	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12819231	12819350	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12819351	12819434	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12819435	12819524	1	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12819435	12819524	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12819525	12819806	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12819807	12819872	1	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12819807	12819872	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12819873	12820059	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12820060	12820173	1	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12820060	12820173	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	intron	12820174	12820989	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	CDS	12820990	12821079	0.97	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	exon	12820990	12821079	.	-	.	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
Ledus.S2	AUGUSTUS	start_codon	12821077	12821079	.	-	0	transcript_id "Ledus.S2G170800.t2"; gene_id "Ledus.S2G170800"
# This transcript jg1908.t2 is derived from g8771.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg1909.t1 is derived from g8772.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13347083	13349088	.	-	.	Ledus.S2G179100
Ledus.S2	AUGUSTUS	transcript	13347893	13349088	.	-	.	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	stop_codon	13347890	13347892	.	-	0	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13347893	13347909	0.97	-	2	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13347893	13347909	.	-	.	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	intron	13347910	13348002	.	-	.	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13348003	13348210	1	-	0	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13348003	13348210	.	-	.	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	intron	13348211	13348342	.	-	.	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13348343	13348444	1	-	0	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13348343	13348444	.	-	.	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	intron	13348445	13348577	.	-	.	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13348578	13348635	0.91	-	1	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13348578	13348635	.	-	.	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	intron	13348636	13348740	.	-	.	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13348741	13348826	0.91	-	0	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13348741	13348826	.	-	.	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	intron	13348827	13348941	.	-	.	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13348942	13349088	0.77	-	0	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13348942	13349088	.	-	.	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	start_codon	13349086	13349088	.	-	0	transcript_id "Ledus.S2G179100.t1"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	transcript	13347083	13349088	.	-	.	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	stop_codon	13347080	13347082	.	-	0	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13347083	13347609	0.99	-	2	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13347083	13347609	.	-	.	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	intron	13347610	13348002	.	-	.	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13348003	13348210	1	-	0	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13348003	13348210	.	-	.	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	intron	13348211	13348342	.	-	.	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13348343	13348444	1	-	0	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13348343	13348444	.	-	.	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	intron	13348445	13348577	.	-	.	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13348578	13348635	0.88	-	1	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13348578	13348635	.	-	.	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	intron	13348636	13348740	.	-	.	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13348741	13348826	0.87	-	0	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13348741	13348826	.	-	.	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	intron	13348827	13348941	.	-	.	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13348942	13349088	0.8	-	0	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13348942	13349088	.	-	.	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	start_codon	13349086	13349088	.	-	0	transcript_id "Ledus.S2G179100.t2"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	transcript	13347083	13347743	.	-	.	transcript_id "Ledus.S2G179100.t3"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	stop_codon	13347080	13347082	.	-	0	transcript_id "Ledus.S2G179100.t3"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13347083	13347609	0.9	-	2	transcript_id "Ledus.S2G179100.t3"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13347083	13347609	.	-	.	transcript_id "Ledus.S2G179100.t3"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	intron	13347610	13347733	.	-	.	transcript_id "Ledus.S2G179100.t3"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	CDS	13347734	13347743	0.88	-	0	transcript_id "Ledus.S2G179100.t3"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	exon	13347734	13347743	.	-	.	transcript_id "Ledus.S2G179100.t3"; gene_id "Ledus.S2G179100"
Ledus.S2	AUGUSTUS	start_codon	13347741	13347743	.	-	0	transcript_id "Ledus.S2G179100.t3"; gene_id "Ledus.S2G179100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7771.t1 is derived from g12442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6424806	6425685	.	+	.	Ledus.S5G054900
Ledus.S5	AUGUSTUS	transcript	6424806	6425685	.	+	.	transcript_id "Ledus.S5G054900.t1"; gene_id "Ledus.S5G054900"
Ledus.S5	AUGUSTUS	start_codon	6424806	6424808	.	+	0	transcript_id "Ledus.S5G054900.t1"; gene_id "Ledus.S5G054900"
Ledus.S5	AUGUSTUS	CDS	6424806	6424974	0.95	+	0	transcript_id "Ledus.S5G054900.t1"; gene_id "Ledus.S5G054900"
Ledus.S5	AUGUSTUS	exon	6424806	6424974	.	+	.	transcript_id "Ledus.S5G054900.t1"; gene_id "Ledus.S5G054900"
Ledus.S5	AUGUSTUS	intron	6424975	6425059	.	+	.	transcript_id "Ledus.S5G054900.t1"; gene_id "Ledus.S5G054900"
Ledus.S5	AUGUSTUS	CDS	6425060	6425685	0.79	+	2	transcript_id "Ledus.S5G054900.t1"; gene_id "Ledus.S5G054900"
Ledus.S5	AUGUSTUS	exon	6425060	6425685	.	+	.	transcript_id "Ledus.S5G054900.t1"; gene_id "Ledus.S5G054900"
Ledus.S5	AUGUSTUS	stop_codon	6425686	6425688	.	+	0	transcript_id "Ledus.S5G054900.t1"; gene_id "Ledus.S5G054900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2013.t1 is derived from g8876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14176975	14177910	.	-	.	Ledus.S2G189500
Ledus.S2	AUGUSTUS	transcript	14176975	14177910	.	-	.	transcript_id "Ledus.S2G189500.t1"; gene_id "Ledus.S2G189500"
Ledus.S2	AUGUSTUS	stop_codon	14176972	14176974	.	-	0	transcript_id "Ledus.S2G189500.t1"; gene_id "Ledus.S2G189500"
Ledus.S2	AUGUSTUS	CDS	14176975	14177254	0.23	-	1	transcript_id "Ledus.S2G189500.t1"; gene_id "Ledus.S2G189500"
Ledus.S2	AUGUSTUS	exon	14176975	14177254	.	-	.	transcript_id "Ledus.S2G189500.t1"; gene_id "Ledus.S2G189500"
Ledus.S2	AUGUSTUS	intron	14177255	14177401	.	-	.	transcript_id "Ledus.S2G189500.t1"; gene_id "Ledus.S2G189500"
Ledus.S2	AUGUSTUS	CDS	14177402	14177910	0.12	-	0	transcript_id "Ledus.S2G189500.t1"; gene_id "Ledus.S2G189500"
Ledus.S2	AUGUSTUS	exon	14177402	14177910	.	-	.	transcript_id "Ledus.S2G189500.t1"; gene_id "Ledus.S2G189500"
Ledus.S2	AUGUSTUS	start_codon	14177908	14177910	.	-	0	transcript_id "Ledus.S2G189500.t1"; gene_id "Ledus.S2G189500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11938.t1 is derived from g5557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7887027	7889538	.	-	.	Ledus.S4G109400
Ledus.S4	AUGUSTUS	transcript	7887027	7889538	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	stop_codon	7887024	7887026	.	-	0	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	CDS	7887027	7887098	0.9	-	0	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	exon	7887027	7887098	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	intron	7887099	7887192	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	CDS	7887193	7887274	1	-	1	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	exon	7887193	7887274	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	intron	7887275	7887361	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	CDS	7887362	7887456	1	-	0	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	exon	7887362	7887456	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	intron	7887457	7887546	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	CDS	7887547	7887712	1	-	1	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	exon	7887547	7887712	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	intron	7887713	7887792	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	CDS	7887793	7887873	0.83	-	1	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	exon	7887793	7887873	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	intron	7887874	7887972	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	CDS	7887973	7888512	0.98	-	1	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	exon	7887973	7888512	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	intron	7888513	7888597	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	CDS	7888598	7888872	1	-	0	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	exon	7888598	7888872	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	intron	7888873	7888958	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	CDS	7888959	7889065	0.57	-	2	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	exon	7888959	7889065	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	intron	7889066	7889143	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	CDS	7889144	7889185	0.56	-	2	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	exon	7889144	7889185	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	intron	7889186	7889408	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	CDS	7889409	7889538	0.52	-	0	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	exon	7889409	7889538	.	-	.	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
Ledus.S4	AUGUSTUS	start_codon	7889536	7889538	.	-	0	transcript_id "Ledus.S4G109400.t1"; gene_id "Ledus.S4G109400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10579.t1 is derived from g11609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16235736	16237366	.	+	.	Ledus.S3G205600
Ledus.S3	AUGUSTUS	transcript	16235736	16237366	.	+	.	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	start_codon	16235736	16235738	.	+	0	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	CDS	16235736	16236110	0.84	+	0	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	exon	16235736	16236110	.	+	.	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	intron	16236111	16236193	.	+	.	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	CDS	16236194	16236386	1	+	0	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	exon	16236194	16236386	.	+	.	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	intron	16236387	16236475	.	+	.	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	CDS	16236476	16236561	1	+	2	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	exon	16236476	16236561	.	+	.	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	intron	16236562	16236650	.	+	.	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	CDS	16236651	16236782	0.67	+	0	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	exon	16236651	16236782	.	+	.	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	intron	16236783	16236881	.	+	.	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	CDS	16236882	16237010	0.32	+	0	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	exon	16236882	16237010	.	+	.	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	intron	16237011	16237087	.	+	.	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	CDS	16237088	16237366	1	+	0	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	exon	16237088	16237366	.	+	.	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
Ledus.S3	AUGUSTUS	stop_codon	16237367	16237369	.	+	0	transcript_id "Ledus.S3G205600.t1"; gene_id "Ledus.S3G205600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg112.t1 is derived from g9525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	494432	496897	.	+	.	Ledus.C8G007200
Ledus.C8	AUGUSTUS	transcript	494432	496897	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	start_codon	494432	494434	.	+	0	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	CDS	494432	494452	1	+	0	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	exon	494432	494452	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	intron	494453	494552	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	CDS	494553	494792	1	+	0	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	exon	494553	494792	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	intron	494793	494857	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	CDS	494858	495050	1	+	0	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	exon	494858	495050	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	intron	495051	495195	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	CDS	495196	495301	1	+	2	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	exon	495196	495301	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	intron	495302	495666	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	CDS	495667	495843	0.51	+	1	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	exon	495667	495843	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	intron	495844	495979	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	CDS	495980	496148	0.52	+	1	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	exon	495980	496148	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	intron	496149	496477	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	CDS	496478	496561	1	+	0	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	exon	496478	496561	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	intron	496562	496711	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	CDS	496712	496897	1	+	0	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	exon	496712	496897	.	+	.	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
Ledus.C8	AUGUSTUS	stop_codon	496898	496900	.	+	0	transcript_id "Ledus.C8G007200.t1"; gene_id "Ledus.C8G007200"
# This transcript jg3692.t2 is derived from g1128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3692.t3 is derived from g1128.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3693.t1 is derived from g1129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10942445	10943370	.	+	.	Ledus.S1G111400
Ledus.S1	AUGUSTUS	transcript	10942445	10943370	.	+	.	transcript_id "Ledus.S1G111400.t1"; gene_id "Ledus.S1G111400"
Ledus.S1	AUGUSTUS	start_codon	10942445	10942447	.	+	0	transcript_id "Ledus.S1G111400.t1"; gene_id "Ledus.S1G111400"
Ledus.S1	AUGUSTUS	CDS	10942445	10942787	0.68	+	0	transcript_id "Ledus.S1G111400.t1"; gene_id "Ledus.S1G111400"
Ledus.S1	AUGUSTUS	exon	10942445	10942787	.	+	.	transcript_id "Ledus.S1G111400.t1"; gene_id "Ledus.S1G111400"
Ledus.S1	AUGUSTUS	intron	10942788	10942863	.	+	.	transcript_id "Ledus.S1G111400.t1"; gene_id "Ledus.S1G111400"
Ledus.S1	AUGUSTUS	CDS	10942864	10943028	1	+	2	transcript_id "Ledus.S1G111400.t1"; gene_id "Ledus.S1G111400"
Ledus.S1	AUGUSTUS	exon	10942864	10943028	.	+	.	transcript_id "Ledus.S1G111400.t1"; gene_id "Ledus.S1G111400"
Ledus.S1	AUGUSTUS	intron	10943029	10943119	.	+	.	transcript_id "Ledus.S1G111400.t1"; gene_id "Ledus.S1G111400"
Ledus.S1	AUGUSTUS	CDS	10943120	10943370	0.99	+	2	transcript_id "Ledus.S1G111400.t1"; gene_id "Ledus.S1G111400"
Ledus.S1	AUGUSTUS	exon	10943120	10943370	.	+	.	transcript_id "Ledus.S1G111400.t1"; gene_id "Ledus.S1G111400"
Ledus.S1	AUGUSTUS	stop_codon	10943371	10943373	.	+	0	transcript_id "Ledus.S1G111400.t1"; gene_id "Ledus.S1G111400"
# This transcript jg3290.t2 is derived from g725.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3291.t1 is derived from g726.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7335521	7335899	.	-	.	Ledus.S1G071200
Ledus.S1	AUGUSTUS	transcript	7335521	7335899	.	-	.	transcript_id "Ledus.S1G071200.t1"; gene_id "Ledus.S1G071200"
Ledus.S1	AUGUSTUS	stop_codon	7335518	7335520	.	-	0	transcript_id "Ledus.S1G071200.t1"; gene_id "Ledus.S1G071200"
Ledus.S1	AUGUSTUS	CDS	7335521	7335559	1	-	0	transcript_id "Ledus.S1G071200.t1"; gene_id "Ledus.S1G071200"
Ledus.S1	AUGUSTUS	exon	7335521	7335559	.	-	.	transcript_id "Ledus.S1G071200.t1"; gene_id "Ledus.S1G071200"
Ledus.S1	AUGUSTUS	intron	7335560	7335653	.	-	.	transcript_id "Ledus.S1G071200.t1"; gene_id "Ledus.S1G071200"
Ledus.S1	AUGUSTUS	CDS	7335654	7335899	0.96	-	0	transcript_id "Ledus.S1G071200.t1"; gene_id "Ledus.S1G071200"
Ledus.S1	AUGUSTUS	exon	7335654	7335899	.	-	.	transcript_id "Ledus.S1G071200.t1"; gene_id "Ledus.S1G071200"
Ledus.S1	AUGUSTUS	start_codon	7335897	7335899	.	-	0	transcript_id "Ledus.S1G071200.t1"; gene_id "Ledus.S1G071200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1122.t1 is derived from g7983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7675396	7677029	.	+	.	Ledus.S2G100400
Ledus.S2	AUGUSTUS	transcript	7675396	7677029	.	+	.	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	start_codon	7675396	7675398	.	+	0	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	CDS	7675396	7675506	0.99	+	0	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	exon	7675396	7675506	.	+	.	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	intron	7675507	7675581	.	+	.	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	CDS	7675582	7675736	1	+	0	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	exon	7675582	7675736	.	+	.	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	intron	7675737	7675796	.	+	.	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	CDS	7675797	7675934	1	+	1	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	exon	7675797	7675934	.	+	.	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	intron	7675935	7676007	.	+	.	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	CDS	7676008	7676303	1	+	1	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	exon	7676008	7676303	.	+	.	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	intron	7676304	7676380	.	+	.	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	CDS	7676381	7676816	0.99	+	2	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	exon	7676381	7676816	.	+	.	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	intron	7676817	7676920	.	+	.	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	CDS	7676921	7677029	0.99	+	1	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	exon	7676921	7677029	.	+	.	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
Ledus.S2	AUGUSTUS	stop_codon	7677030	7677032	.	+	0	transcript_id "Ledus.S2G100400.t1"; gene_id "Ledus.S2G100400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2167.t1 is derived from g9030.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15487447	15489844	.	+	.	Ledus.S2G204900
Ledus.S2	AUGUSTUS	transcript	15487447	15489844	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	start_codon	15487447	15487449	.	+	0	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15487447	15487596	0.96	+	0	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15487447	15487596	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15487597	15487680	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15487681	15487941	0.93	+	0	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15487681	15487941	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15487942	15488042	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15488043	15488202	0.95	+	0	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15488043	15488202	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15488203	15488323	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15488324	15488493	1	+	2	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15488324	15488493	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15488494	15488668	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15488669	15488891	0.99	+	0	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15488669	15488891	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15488892	15489038	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15489039	15489193	0.99	+	2	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15489039	15489193	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15489194	15489320	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15489321	15489410	0.89	+	0	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15489321	15489410	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15489411	15489535	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15489536	15489604	1	+	0	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15489536	15489604	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15489605	15489787	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15489788	15489844	0.68	+	0	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15489788	15489844	.	+	.	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	stop_codon	15489845	15489847	.	+	0	transcript_id "Ledus.S2G204900.t1"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	transcript	15487447	15489844	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	start_codon	15487447	15487449	.	+	0	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15487447	15487596	0.99	+	0	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15487447	15487596	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15487597	15487680	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15487681	15487941	0.9	+	0	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15487681	15487941	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15487942	15488042	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15488043	15488202	0.95	+	0	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15488043	15488202	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15488203	15488323	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15488324	15488493	0.89	+	2	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15488324	15488493	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15488494	15488713	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15488714	15488891	0.89	+	0	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15488714	15488891	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15488892	15489038	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15489039	15489193	1	+	2	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15489039	15489193	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15489194	15489320	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15489321	15489410	0.92	+	0	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15489321	15489410	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15489411	15489535	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15489536	15489604	1	+	0	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15489536	15489604	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	intron	15489605	15489787	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	CDS	15489788	15489844	0.65	+	0	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	exon	15489788	15489844	.	+	.	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
Ledus.S2	AUGUSTUS	stop_codon	15489845	15489847	.	+	0	transcript_id "Ledus.S2G204900.t2"; gene_id "Ledus.S2G204900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10804.t1 is derived from g11836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17849179	17852773	.	-	.	Ledus.S3G228100
Ledus.S3	AUGUSTUS	transcript	17849179	17852773	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	stop_codon	17849176	17849178	.	-	0	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	CDS	17849179	17849358	1	-	0	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	exon	17849179	17849358	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	intron	17849359	17849435	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	CDS	17849436	17849585	1	-	0	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	exon	17849436	17849585	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	intron	17849586	17849674	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	CDS	17849675	17849810	1	-	1	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	exon	17849675	17849810	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	intron	17849811	17849902	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	CDS	17849903	17850134	1	-	2	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	exon	17849903	17850134	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	intron	17850135	17850227	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	CDS	17850228	17850479	1	-	2	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	exon	17850228	17850479	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	intron	17850480	17851510	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	CDS	17851511	17852196	1	-	1	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	exon	17851511	17852196	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	intron	17852197	17852280	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	CDS	17852281	17852485	1	-	2	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	exon	17852281	17852485	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	intron	17852486	17852559	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	CDS	17852560	17852773	0.92	-	0	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	exon	17852560	17852773	.	-	.	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
Ledus.S3	AUGUSTUS	start_codon	17852771	17852773	.	-	0	transcript_id "Ledus.S3G228100.t1"; gene_id "Ledus.S3G228100"
# This transcript jg10540.t2 is derived from g11570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10541.t1 is derived from g11571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16025048	16025874	.	+	.	Ledus.S3G201800
Ledus.S3	AUGUSTUS	transcript	16025048	16025874	.	+	.	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	start_codon	16025048	16025050	.	+	0	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	CDS	16025048	16025323	0.99	+	0	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	exon	16025048	16025323	.	+	.	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	intron	16025324	16025404	.	+	.	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	CDS	16025405	16025458	1	+	0	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	exon	16025405	16025458	.	+	.	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	intron	16025459	16025542	.	+	.	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	CDS	16025543	16025602	1	+	0	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	exon	16025543	16025602	.	+	.	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	intron	16025603	16025688	.	+	.	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	CDS	16025689	16025874	1	+	0	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	exon	16025689	16025874	.	+	.	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
Ledus.S3	AUGUSTUS	stop_codon	16025875	16025877	.	+	0	transcript_id "Ledus.S3G201800.t1"; gene_id "Ledus.S3G201800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11005.t1 is derived from g4623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1073210	1077314	.	-	.	Ledus.S4G016100
Ledus.S4	AUGUSTUS	transcript	1073210	1077314	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	stop_codon	1073207	1073209	.	-	0	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	CDS	1073210	1073302	1	-	0	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	exon	1073210	1073302	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	intron	1073303	1073401	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	CDS	1073402	1073608	1	-	0	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	exon	1073402	1073608	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	intron	1073609	1073712	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	CDS	1073713	1073823	1	-	0	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	exon	1073713	1073823	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	intron	1073824	1073951	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	CDS	1073952	1074150	1	-	1	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	exon	1073952	1074150	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	intron	1074151	1074246	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	CDS	1074247	1074332	1	-	0	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	exon	1074247	1074332	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	intron	1074333	1074515	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	CDS	1074516	1074674	1	-	0	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	exon	1074516	1074674	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	intron	1074675	1074791	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	CDS	1074792	1074890	1	-	0	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	exon	1074792	1074890	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	intron	1074891	1075060	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	CDS	1075061	1076254	1	-	0	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	exon	1075061	1076254	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	intron	1076255	1076360	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	CDS	1076361	1076429	0.91	-	0	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	exon	1076361	1076429	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	intron	1076430	1076558	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	CDS	1076559	1077314	1	-	0	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	exon	1076559	1077314	.	-	.	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
Ledus.S4	AUGUSTUS	start_codon	1077312	1077314	.	-	0	transcript_id "Ledus.S4G016100.t1"; gene_id "Ledus.S4G016100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1602.t1 is derived from g8463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11317802	11318899	.	+	.	Ledus.S2G148400
Ledus.S2	AUGUSTUS	transcript	11317802	11318899	.	+	.	transcript_id "Ledus.S2G148400.t1"; gene_id "Ledus.S2G148400"
Ledus.S2	AUGUSTUS	start_codon	11317802	11317804	.	+	0	transcript_id "Ledus.S2G148400.t1"; gene_id "Ledus.S2G148400"
Ledus.S2	AUGUSTUS	CDS	11317802	11318899	0.99	+	0	transcript_id "Ledus.S2G148400.t1"; gene_id "Ledus.S2G148400"
Ledus.S2	AUGUSTUS	exon	11317802	11318899	.	+	.	transcript_id "Ledus.S2G148400.t1"; gene_id "Ledus.S2G148400"
Ledus.S2	AUGUSTUS	stop_codon	11318900	11318902	.	+	0	transcript_id "Ledus.S2G148400.t1"; gene_id "Ledus.S2G148400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3039.t1 is derived from g474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5443261	5445993	.	+	.	Ledus.S1G046000
Ledus.S1	AUGUSTUS	transcript	5443261	5445993	.	+	.	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	start_codon	5443261	5443263	.	+	0	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	CDS	5443261	5443396	0.53	+	0	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	exon	5443261	5443396	.	+	.	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	intron	5443397	5443499	.	+	.	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	CDS	5443500	5443588	0.69	+	2	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	exon	5443500	5443588	.	+	.	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	intron	5443589	5443672	.	+	.	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	CDS	5443673	5443832	1	+	0	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	exon	5443673	5443832	.	+	.	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	intron	5443833	5443921	.	+	.	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	CDS	5443922	5444007	1	+	2	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	exon	5443922	5444007	.	+	.	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	intron	5444008	5444106	.	+	.	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	CDS	5444107	5445993	0.49	+	0	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	exon	5444107	5445993	.	+	.	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
Ledus.S1	AUGUSTUS	stop_codon	5445994	5445996	.	+	0	transcript_id "Ledus.S1G046000.t1"; gene_id "Ledus.S1G046000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10419.t1 is derived from g11449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15044113	15047490	.	-	.	Ledus.S3G189600
Ledus.S3	AUGUSTUS	transcript	15044113	15047490	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	stop_codon	15044110	15044112	.	-	0	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	CDS	15044113	15044177	0.66	-	2	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	exon	15044113	15044177	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	intron	15044178	15044463	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	CDS	15044464	15044480	0.6	-	1	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	exon	15044464	15044480	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	intron	15044481	15045002	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	CDS	15045003	15045083	0.82	-	1	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	exon	15045003	15045083	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	intron	15045084	15045165	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	CDS	15045166	15045274	1	-	2	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	exon	15045166	15045274	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	intron	15045275	15045359	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	CDS	15045360	15045387	1	-	0	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	exon	15045360	15045387	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	intron	15045388	15045490	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	CDS	15045491	15045663	1	-	2	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	exon	15045491	15045663	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	intron	15045664	15045841	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	CDS	15045842	15045965	1	-	0	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	exon	15045842	15045965	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	intron	15045966	15046146	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	CDS	15046147	15046218	1	-	0	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	exon	15046147	15046218	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	intron	15046219	15047229	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	CDS	15047230	15047490	0.84	-	0	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	exon	15047230	15047490	.	-	.	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
Ledus.S3	AUGUSTUS	start_codon	15047488	15047490	.	-	0	transcript_id "Ledus.S3G189600.t1"; gene_id "Ledus.S3G189600"
# This transcript jg6785.t2 is derived from g4229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6786.t1 is derived from g4230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34138813	34140153	.	-	.	Ledus.S1G420700
Ledus.S1	AUGUSTUS	transcript	34138813	34140153	.	-	.	transcript_id "Ledus.S1G420700.t1"; gene_id "Ledus.S1G420700"
Ledus.S1	AUGUSTUS	stop_codon	34138810	34138812	.	-	0	transcript_id "Ledus.S1G420700.t1"; gene_id "Ledus.S1G420700"
Ledus.S1	AUGUSTUS	CDS	34138813	34139739	0.97	-	0	transcript_id "Ledus.S1G420700.t1"; gene_id "Ledus.S1G420700"
Ledus.S1	AUGUSTUS	exon	34138813	34139739	.	-	.	transcript_id "Ledus.S1G420700.t1"; gene_id "Ledus.S1G420700"
Ledus.S1	AUGUSTUS	intron	34139740	34139817	.	-	.	transcript_id "Ledus.S1G420700.t1"; gene_id "Ledus.S1G420700"
Ledus.S1	AUGUSTUS	CDS	34139818	34140153	0.86	-	0	transcript_id "Ledus.S1G420700.t1"; gene_id "Ledus.S1G420700"
Ledus.S1	AUGUSTUS	exon	34139818	34140153	.	-	.	transcript_id "Ledus.S1G420700.t1"; gene_id "Ledus.S1G420700"
Ledus.S1	AUGUSTUS	start_codon	34140151	34140153	.	-	0	transcript_id "Ledus.S1G420700.t1"; gene_id "Ledus.S1G420700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1777.t1 is derived from g8640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12441554	12445258	.	-	.	Ledus.S2G165900
Ledus.S2	AUGUSTUS	transcript	12441554	12445258	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	stop_codon	12441551	12441553	.	-	0	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12441554	12441654	0.65	-	2	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12441554	12441654	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12441655	12441755	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12441756	12441834	0.98	-	0	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12441756	12441834	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12441835	12441925	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12441926	12442054	1	-	0	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12441926	12442054	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12442055	12442157	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12442158	12442277	1	-	0	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12442158	12442277	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12442278	12442394	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12442395	12442508	1	-	0	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12442395	12442508	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12442509	12442589	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12442590	12442666	1	-	2	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12442590	12442666	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12442667	12442753	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12442754	12442842	1	-	1	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12442754	12442842	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12442843	12442924	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12442925	12442961	1	-	2	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12442925	12442961	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12442962	12443398	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12443399	12443501	1	-	0	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12443399	12443501	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12443502	12443691	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12443692	12443766	1	-	0	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12443692	12443766	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12443767	12444098	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12444099	12444174	1	-	1	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12444099	12444174	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12444175	12444317	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12444318	12444422	1	-	1	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12444318	12444422	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12444423	12444511	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12444512	12444613	1	-	1	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12444512	12444613	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12444614	12444695	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12444696	12444833	1	-	1	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12444696	12444833	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	intron	12444834	12445184	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	CDS	12445185	12445258	1	-	0	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	exon	12445185	12445258	.	-	.	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
Ledus.S2	AUGUSTUS	start_codon	12445256	12445258	.	-	0	transcript_id "Ledus.S2G165900.t1"; gene_id "Ledus.S2G165900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5291.t1 is derived from g2730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22878259	22878853	.	+	.	Ledus.S1G271200
Ledus.S1	AUGUSTUS	transcript	22878259	22878853	.	+	.	transcript_id "Ledus.S1G271200.t1"; gene_id "Ledus.S1G271200"
Ledus.S1	AUGUSTUS	start_codon	22878259	22878261	.	+	0	transcript_id "Ledus.S1G271200.t1"; gene_id "Ledus.S1G271200"
Ledus.S1	AUGUSTUS	CDS	22878259	22878609	0.3	+	0	transcript_id "Ledus.S1G271200.t1"; gene_id "Ledus.S1G271200"
Ledus.S1	AUGUSTUS	exon	22878259	22878609	.	+	.	transcript_id "Ledus.S1G271200.t1"; gene_id "Ledus.S1G271200"
Ledus.S1	AUGUSTUS	intron	22878610	22878766	.	+	.	transcript_id "Ledus.S1G271200.t1"; gene_id "Ledus.S1G271200"
Ledus.S1	AUGUSTUS	CDS	22878767	22878853	0.55	+	0	transcript_id "Ledus.S1G271200.t1"; gene_id "Ledus.S1G271200"
Ledus.S1	AUGUSTUS	exon	22878767	22878853	.	+	.	transcript_id "Ledus.S1G271200.t1"; gene_id "Ledus.S1G271200"
Ledus.S1	AUGUSTUS	stop_codon	22878854	22878856	.	+	0	transcript_id "Ledus.S1G271200.t1"; gene_id "Ledus.S1G271200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11266.t1 is derived from g4884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3085900	3086836	.	+	.	Ledus.S4G042200
Ledus.S4	AUGUSTUS	transcript	3085900	3086836	.	+	.	transcript_id "Ledus.S4G042200.t1"; gene_id "Ledus.S4G042200"
Ledus.S4	AUGUSTUS	start_codon	3085900	3085902	.	+	0	transcript_id "Ledus.S4G042200.t1"; gene_id "Ledus.S4G042200"
Ledus.S4	AUGUSTUS	CDS	3085900	3086235	0.29	+	0	transcript_id "Ledus.S4G042200.t1"; gene_id "Ledus.S4G042200"
Ledus.S4	AUGUSTUS	exon	3085900	3086235	.	+	.	transcript_id "Ledus.S4G042200.t1"; gene_id "Ledus.S4G042200"
Ledus.S4	AUGUSTUS	intron	3086236	3086312	.	+	.	transcript_id "Ledus.S4G042200.t1"; gene_id "Ledus.S4G042200"
Ledus.S4	AUGUSTUS	CDS	3086313	3086448	0.38	+	0	transcript_id "Ledus.S4G042200.t1"; gene_id "Ledus.S4G042200"
Ledus.S4	AUGUSTUS	exon	3086313	3086448	.	+	.	transcript_id "Ledus.S4G042200.t1"; gene_id "Ledus.S4G042200"
Ledus.S4	AUGUSTUS	intron	3086449	3086798	.	+	.	transcript_id "Ledus.S4G042200.t1"; gene_id "Ledus.S4G042200"
Ledus.S4	AUGUSTUS	CDS	3086799	3086836	0.42	+	2	transcript_id "Ledus.S4G042200.t1"; gene_id "Ledus.S4G042200"
Ledus.S4	AUGUSTUS	exon	3086799	3086836	.	+	.	transcript_id "Ledus.S4G042200.t1"; gene_id "Ledus.S4G042200"
Ledus.S4	AUGUSTUS	stop_codon	3086837	3086839	.	+	0	transcript_id "Ledus.S4G042200.t1"; gene_id "Ledus.S4G042200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg907.t1 is derived from g7768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6076280	6078034	.	-	.	Ledus.S2G078900
Ledus.S2	AUGUSTUS	transcript	6076280	6078034	.	-	.	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	stop_codon	6076277	6076279	.	-	0	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	CDS	6076280	6076313	0.48	-	1	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	exon	6076280	6076313	.	-	.	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	intron	6076314	6076397	.	-	.	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	CDS	6076398	6076449	0.53	-	2	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	exon	6076398	6076449	.	-	.	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	intron	6076450	6076584	.	-	.	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	CDS	6076585	6077524	0.53	-	0	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	exon	6076585	6077524	.	-	.	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	intron	6077525	6077614	.	-	.	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	CDS	6077615	6078034	1	-	0	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	exon	6077615	6078034	.	-	.	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
Ledus.S2	AUGUSTUS	start_codon	6078032	6078034	.	-	0	transcript_id "Ledus.S2G078900.t1"; gene_id "Ledus.S2G078900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4469.t1 is derived from g1905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17231150	17232511	.	+	.	Ledus.S1G189000
Ledus.S1	AUGUSTUS	transcript	17231150	17232511	.	+	.	transcript_id "Ledus.S1G189000.t1"; gene_id "Ledus.S1G189000"
Ledus.S1	AUGUSTUS	start_codon	17231150	17231152	.	+	0	transcript_id "Ledus.S1G189000.t1"; gene_id "Ledus.S1G189000"
Ledus.S1	AUGUSTUS	CDS	17231150	17232511	0.76	+	0	transcript_id "Ledus.S1G189000.t1"; gene_id "Ledus.S1G189000"
Ledus.S1	AUGUSTUS	exon	17231150	17232511	.	+	.	transcript_id "Ledus.S1G189000.t1"; gene_id "Ledus.S1G189000"
Ledus.S1	AUGUSTUS	stop_codon	17232512	17232514	.	+	0	transcript_id "Ledus.S1G189000.t1"; gene_id "Ledus.S1G189000"
# This transcript jg5458.t2 is derived from g2897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5459.t1 is derived from g2898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24396425	24399180	.	-	.	Ledus.S1G288000
Ledus.S1	AUGUSTUS	transcript	24396425	24399180	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	stop_codon	24396422	24396424	.	-	0	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	CDS	24396425	24396739	0.89	-	0	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	exon	24396425	24396739	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	intron	24396740	24396836	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	CDS	24396837	24397573	0.45	-	2	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	exon	24396837	24397573	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	intron	24397574	24397856	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	CDS	24397857	24398076	0.3	-	0	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	exon	24397857	24398076	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	intron	24398077	24398161	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	CDS	24398162	24398314	0.94	-	0	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	exon	24398162	24398314	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	intron	24398315	24398432	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	CDS	24398433	24398460	1	-	1	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	exon	24398433	24398460	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	intron	24398461	24398636	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	CDS	24398637	24398673	1	-	2	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	exon	24398637	24398673	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	intron	24398674	24398776	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	CDS	24398777	24398897	1	-	0	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	exon	24398777	24398897	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	intron	24398898	24399177	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	CDS	24399178	24399180	1	-	0	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	exon	24399178	24399180	.	-	.	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
Ledus.S1	AUGUSTUS	start_codon	24399178	24399180	.	-	0	transcript_id "Ledus.S1G288000.t1"; gene_id "Ledus.S1G288000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6428.t1 is derived from g3871.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31206647	31210811	.	+	.	Ledus.S1G384900
Ledus.S1	AUGUSTUS	transcript	31206647	31210811	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	start_codon	31206647	31206649	.	+	0	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31206647	31206700	0.78	+	0	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31206647	31206700	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31206701	31206809	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31206810	31206946	1	+	0	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31206810	31206946	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31206947	31207043	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31207044	31207231	1	+	1	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31207044	31207231	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31207232	31207352	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31207353	31207651	1	+	2	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31207353	31207651	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31207652	31207735	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31207736	31207944	1	+	0	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31207736	31207944	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31207945	31208099	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31208100	31208202	1	+	1	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31208100	31208202	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31208203	31208345	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31208346	31208509	1	+	0	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31208346	31208509	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31208510	31208637	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31208638	31208776	1	+	1	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31208638	31208776	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31208777	31208943	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31208944	31209087	1	+	0	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31208944	31209087	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31209088	31209165	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31209166	31209302	1	+	0	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31209166	31209302	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31209303	31209385	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31209386	31209721	1	+	1	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31209386	31209721	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31209722	31209811	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31209812	31209963	1	+	1	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31209812	31209963	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31209964	31210090	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31210091	31210188	1	+	2	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31210091	31210188	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	intron	31210189	31210304	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	CDS	31210305	31210811	1	+	0	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	exon	31210305	31210811	.	+	.	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
Ledus.S1	AUGUSTUS	stop_codon	31210812	31210814	.	+	0	transcript_id "Ledus.S1G384900.t1"; gene_id "Ledus.S1G384900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3634.t1 is derived from g1070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10317696	10318310	.	-	.	Ledus.S1G105500
Ledus.S1	AUGUSTUS	transcript	10317696	10318310	.	-	.	transcript_id "Ledus.S1G105500.t1"; gene_id "Ledus.S1G105500"
Ledus.S1	AUGUSTUS	stop_codon	10317693	10317695	.	-	0	transcript_id "Ledus.S1G105500.t1"; gene_id "Ledus.S1G105500"
Ledus.S1	AUGUSTUS	CDS	10317696	10318310	0.45	-	0	transcript_id "Ledus.S1G105500.t1"; gene_id "Ledus.S1G105500"
Ledus.S1	AUGUSTUS	exon	10317696	10318310	.	-	.	transcript_id "Ledus.S1G105500.t1"; gene_id "Ledus.S1G105500"
Ledus.S1	AUGUSTUS	start_codon	10318308	10318310	.	-	0	transcript_id "Ledus.S1G105500.t1"; gene_id "Ledus.S1G105500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7163.t1 is derived from g6694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1918468	1919336	.	-	.	Ledus.C7G022400
Ledus.C7	AUGUSTUS	transcript	1918468	1919336	.	-	.	transcript_id "Ledus.C7G022400.t1"; gene_id "Ledus.C7G022400"
Ledus.C7	AUGUSTUS	stop_codon	1918465	1918467	.	-	0	transcript_id "Ledus.C7G022400.t1"; gene_id "Ledus.C7G022400"
Ledus.C7	AUGUSTUS	CDS	1918468	1918763	1	-	2	transcript_id "Ledus.C7G022400.t1"; gene_id "Ledus.C7G022400"
Ledus.C7	AUGUSTUS	exon	1918468	1918763	.	-	.	transcript_id "Ledus.C7G022400.t1"; gene_id "Ledus.C7G022400"
Ledus.C7	AUGUSTUS	intron	1918764	1918849	.	-	.	transcript_id "Ledus.C7G022400.t1"; gene_id "Ledus.C7G022400"
Ledus.C7	AUGUSTUS	CDS	1918850	1918898	0.98	-	0	transcript_id "Ledus.C7G022400.t1"; gene_id "Ledus.C7G022400"
Ledus.C7	AUGUSTUS	exon	1918850	1918898	.	-	.	transcript_id "Ledus.C7G022400.t1"; gene_id "Ledus.C7G022400"
Ledus.C7	AUGUSTUS	intron	1918899	1919111	.	-	.	transcript_id "Ledus.C7G022400.t1"; gene_id "Ledus.C7G022400"
Ledus.C7	AUGUSTUS	CDS	1919112	1919336	0.79	-	0	transcript_id "Ledus.C7G022400.t1"; gene_id "Ledus.C7G022400"
Ledus.C7	AUGUSTUS	exon	1919112	1919336	.	-	.	transcript_id "Ledus.C7G022400.t1"; gene_id "Ledus.C7G022400"
Ledus.C7	AUGUSTUS	start_codon	1919334	1919336	.	-	0	transcript_id "Ledus.C7G022400.t1"; gene_id "Ledus.C7G022400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9355.t1 is derived from g10385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6341342	6341791	.	-	.	Ledus.S3G083200
Ledus.S3	AUGUSTUS	transcript	6341342	6341791	.	-	.	transcript_id "Ledus.S3G083200.t1"; gene_id "Ledus.S3G083200"
Ledus.S3	AUGUSTUS	stop_codon	6341339	6341341	.	-	0	transcript_id "Ledus.S3G083200.t1"; gene_id "Ledus.S3G083200"
Ledus.S3	AUGUSTUS	CDS	6341342	6341791	0.98	-	0	transcript_id "Ledus.S3G083200.t1"; gene_id "Ledus.S3G083200"
Ledus.S3	AUGUSTUS	exon	6341342	6341791	.	-	.	transcript_id "Ledus.S3G083200.t1"; gene_id "Ledus.S3G083200"
Ledus.S3	AUGUSTUS	start_codon	6341789	6341791	.	-	0	transcript_id "Ledus.S3G083200.t1"; gene_id "Ledus.S3G083200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12771.t1 is derived from g6393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14404026	14404253	.	+	.	Ledus.S4G192700
Ledus.S4	AUGUSTUS	transcript	14404026	14404253	.	+	.	transcript_id "Ledus.S4G192700.t1"; gene_id "Ledus.S4G192700"
Ledus.S4	AUGUSTUS	start_codon	14404026	14404028	.	+	0	transcript_id "Ledus.S4G192700.t1"; gene_id "Ledus.S4G192700"
Ledus.S4	AUGUSTUS	CDS	14404026	14404253	0.66	+	0	transcript_id "Ledus.S4G192700.t1"; gene_id "Ledus.S4G192700"
Ledus.S4	AUGUSTUS	exon	14404026	14404253	.	+	.	transcript_id "Ledus.S4G192700.t1"; gene_id "Ledus.S4G192700"
Ledus.S4	AUGUSTUS	stop_codon	14404254	14404256	.	+	0	transcript_id "Ledus.S4G192700.t1"; gene_id "Ledus.S4G192700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11214.t1 is derived from g4832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2762106	2762699	.	-	.	Ledus.S4G037000
Ledus.S4	AUGUSTUS	transcript	2762106	2762699	.	-	.	transcript_id "Ledus.S4G037000.t1"; gene_id "Ledus.S4G037000"
Ledus.S4	AUGUSTUS	stop_codon	2762103	2762105	.	-	0	transcript_id "Ledus.S4G037000.t1"; gene_id "Ledus.S4G037000"
Ledus.S4	AUGUSTUS	CDS	2762106	2762699	0.59	-	0	transcript_id "Ledus.S4G037000.t1"; gene_id "Ledus.S4G037000"
Ledus.S4	AUGUSTUS	exon	2762106	2762699	.	-	.	transcript_id "Ledus.S4G037000.t1"; gene_id "Ledus.S4G037000"
Ledus.S4	AUGUSTUS	start_codon	2762697	2762699	.	-	0	transcript_id "Ledus.S4G037000.t1"; gene_id "Ledus.S4G037000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12725.t1 is derived from g6347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14090400	14095246	.	+	.	Ledus.S4G188100
Ledus.S4	AUGUSTUS	transcript	14090400	14095246	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	start_codon	14090400	14090402	.	+	0	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14090400	14090441	0.97	+	0	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14090400	14090441	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	intron	14090442	14090566	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14090567	14090803	0.99	+	0	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14090567	14090803	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	intron	14090804	14091011	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14091012	14091136	1	+	0	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14091012	14091136	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	intron	14091137	14091260	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14091261	14091579	0.98	+	1	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14091261	14091579	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	intron	14091580	14091710	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14091711	14091956	1	+	0	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14091711	14091956	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	intron	14091957	14092068	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14092069	14092254	1	+	0	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14092069	14092254	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	intron	14092255	14092334	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14092335	14092429	1	+	0	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14092335	14092429	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	intron	14092430	14092509	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14092510	14092607	1	+	1	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14092510	14092607	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	intron	14092608	14092707	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14092708	14092731	1	+	2	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14092708	14092731	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	intron	14092732	14092807	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14092808	14092814	1	+	2	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14092808	14092814	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	intron	14092815	14092956	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14092957	14093126	0.94	+	1	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14092957	14093126	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	intron	14093127	14093593	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14093594	14093815	0.91	+	2	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14093594	14093815	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	intron	14093816	14093903	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	CDS	14093904	14095246	1	+	2	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	exon	14093904	14095246	.	+	.	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
Ledus.S4	AUGUSTUS	stop_codon	14095247	14095249	.	+	0	transcript_id "Ledus.S4G188100.t1"; gene_id "Ledus.S4G188100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg500.t1 is derived from g7361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2935467	2937396	.	+	.	Ledus.S2G038200
Ledus.S2	AUGUSTUS	transcript	2935467	2937396	.	+	.	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	start_codon	2935467	2935469	.	+	0	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	CDS	2935467	2935895	0.45	+	0	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	exon	2935467	2935895	.	+	.	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	intron	2935896	2936020	.	+	.	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	CDS	2936021	2936331	0.45	+	0	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	exon	2936021	2936331	.	+	.	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	intron	2936332	2936639	.	+	.	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	CDS	2936640	2936810	0.27	+	1	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	exon	2936640	2936810	.	+	.	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	intron	2936811	2936888	.	+	.	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	CDS	2936889	2937396	0.57	+	1	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	exon	2936889	2937396	.	+	.	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
Ledus.S2	AUGUSTUS	stop_codon	2937397	2937399	.	+	0	transcript_id "Ledus.S2G038200.t1"; gene_id "Ledus.S2G038200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11297.t1 is derived from g4915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3443211	3444151	.	+	.	Ledus.S4G045300
Ledus.S4	AUGUSTUS	transcript	3443211	3444151	.	+	.	transcript_id "Ledus.S4G045300.t1"; gene_id "Ledus.S4G045300"
Ledus.S4	AUGUSTUS	start_codon	3443211	3443213	.	+	0	transcript_id "Ledus.S4G045300.t1"; gene_id "Ledus.S4G045300"
Ledus.S4	AUGUSTUS	CDS	3443211	3443735	0.69	+	0	transcript_id "Ledus.S4G045300.t1"; gene_id "Ledus.S4G045300"
Ledus.S4	AUGUSTUS	exon	3443211	3443735	.	+	.	transcript_id "Ledus.S4G045300.t1"; gene_id "Ledus.S4G045300"
Ledus.S4	AUGUSTUS	intron	3443736	3443833	.	+	.	transcript_id "Ledus.S4G045300.t1"; gene_id "Ledus.S4G045300"
Ledus.S4	AUGUSTUS	CDS	3443834	3443887	1	+	0	transcript_id "Ledus.S4G045300.t1"; gene_id "Ledus.S4G045300"
Ledus.S4	AUGUSTUS	exon	3443834	3443887	.	+	.	transcript_id "Ledus.S4G045300.t1"; gene_id "Ledus.S4G045300"
Ledus.S4	AUGUSTUS	intron	3443888	3444028	.	+	.	transcript_id "Ledus.S4G045300.t1"; gene_id "Ledus.S4G045300"
Ledus.S4	AUGUSTUS	CDS	3444029	3444151	1	+	0	transcript_id "Ledus.S4G045300.t1"; gene_id "Ledus.S4G045300"
Ledus.S4	AUGUSTUS	exon	3444029	3444151	.	+	.	transcript_id "Ledus.S4G045300.t1"; gene_id "Ledus.S4G045300"
Ledus.S4	AUGUSTUS	stop_codon	3444152	3444154	.	+	0	transcript_id "Ledus.S4G045300.t1"; gene_id "Ledus.S4G045300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4532.t1 is derived from g1969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17567465	17568002	.	+	.	Ledus.S1G195300
Ledus.S1	AUGUSTUS	transcript	17567465	17568002	.	+	.	transcript_id "Ledus.S1G195300.t1"; gene_id "Ledus.S1G195300"
Ledus.S1	AUGUSTUS	start_codon	17567465	17567467	.	+	0	transcript_id "Ledus.S1G195300.t1"; gene_id "Ledus.S1G195300"
Ledus.S1	AUGUSTUS	CDS	17567465	17567540	0.98	+	0	transcript_id "Ledus.S1G195300.t1"; gene_id "Ledus.S1G195300"
Ledus.S1	AUGUSTUS	exon	17567465	17567540	.	+	.	transcript_id "Ledus.S1G195300.t1"; gene_id "Ledus.S1G195300"
Ledus.S1	AUGUSTUS	intron	17567541	17567757	.	+	.	transcript_id "Ledus.S1G195300.t1"; gene_id "Ledus.S1G195300"
Ledus.S1	AUGUSTUS	CDS	17567758	17567798	1	+	2	transcript_id "Ledus.S1G195300.t1"; gene_id "Ledus.S1G195300"
Ledus.S1	AUGUSTUS	exon	17567758	17567798	.	+	.	transcript_id "Ledus.S1G195300.t1"; gene_id "Ledus.S1G195300"
Ledus.S1	AUGUSTUS	intron	17567799	17567885	.	+	.	transcript_id "Ledus.S1G195300.t1"; gene_id "Ledus.S1G195300"
Ledus.S1	AUGUSTUS	CDS	17567886	17568002	0.99	+	0	transcript_id "Ledus.S1G195300.t1"; gene_id "Ledus.S1G195300"
Ledus.S1	AUGUSTUS	exon	17567886	17568002	.	+	.	transcript_id "Ledus.S1G195300.t1"; gene_id "Ledus.S1G195300"
Ledus.S1	AUGUSTUS	stop_codon	17568003	17568005	.	+	0	transcript_id "Ledus.S1G195300.t1"; gene_id "Ledus.S1G195300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11618.t1 is derived from g5236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5544813	5546431	.	-	.	Ledus.S4G077400
Ledus.S4	AUGUSTUS	transcript	5544813	5546431	.	-	.	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	stop_codon	5544810	5544812	.	-	0	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	CDS	5544813	5544852	0.45	-	1	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	exon	5544813	5544852	.	-	.	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	intron	5544853	5544955	.	-	.	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	CDS	5544956	5544981	0.48	-	0	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	exon	5544956	5544981	.	-	.	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	intron	5544982	5545068	.	-	.	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	CDS	5545069	5545478	0.95	-	2	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	exon	5545069	5545478	.	-	.	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	intron	5545479	5545567	.	-	.	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	CDS	5545568	5545814	0.7	-	0	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	exon	5545568	5545814	.	-	.	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	intron	5545815	5545993	.	-	.	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	CDS	5545994	5546431	0.98	-	0	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	exon	5545994	5546431	.	-	.	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	start_codon	5546429	5546431	.	-	0	transcript_id "Ledus.S4G077400.t1"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	transcript	5544813	5545769	.	-	.	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	stop_codon	5544810	5544812	.	-	0	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	CDS	5544813	5544852	0.31	-	1	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	exon	5544813	5544852	.	-	.	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	intron	5544853	5544955	.	-	.	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	CDS	5544956	5544981	0.34	-	0	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	exon	5544956	5544981	.	-	.	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	intron	5544982	5545068	.	-	.	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	CDS	5545069	5545478	0.52	-	2	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	exon	5545069	5545478	.	-	.	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	intron	5545479	5545567	.	-	.	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	CDS	5545568	5545769	0.5	-	0	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	exon	5545568	5545769	.	-	.	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
Ledus.S4	AUGUSTUS	start_codon	5545767	5545769	.	-	0	transcript_id "Ledus.S4G077400.t2"; gene_id "Ledus.S4G077400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6115.t1 is derived from g3558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28968832	28971534	.	+	.	Ledus.S1G353600
Ledus.S1	AUGUSTUS	transcript	28968832	28971534	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	start_codon	28968832	28968834	.	+	0	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	CDS	28968832	28968993	1	+	0	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	exon	28968832	28968993	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	intron	28968994	28969066	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	CDS	28969067	28969357	1	+	0	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	exon	28969067	28969357	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	intron	28969358	28969428	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	CDS	28969429	28969765	1	+	0	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	exon	28969429	28969765	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	intron	28969766	28969860	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	CDS	28969861	28970141	1	+	2	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	exon	28969861	28970141	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	intron	28970142	28970246	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	CDS	28970247	28970340	0.52	+	0	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	exon	28970247	28970340	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	intron	28970341	28970559	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	CDS	28970560	28970654	0.6	+	2	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	exon	28970560	28970654	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	intron	28970655	28970796	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	CDS	28970797	28970885	0.91	+	0	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	exon	28970797	28970885	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	intron	28970886	28971052	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	CDS	28971053	28971121	0.98	+	1	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	exon	28971053	28971121	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	intron	28971122	28971212	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	CDS	28971213	28971534	0.68	+	1	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	exon	28971213	28971534	.	+	.	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
Ledus.S1	AUGUSTUS	stop_codon	28971535	28971537	.	+	0	transcript_id "Ledus.S1G353600.t1"; gene_id "Ledus.S1G353600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7313.t1 is derived from g11984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1012963	1013265	.	+	.	Ledus.S5G009100
Ledus.S5	AUGUSTUS	transcript	1012963	1013265	.	+	.	transcript_id "Ledus.S5G009100.t1"; gene_id "Ledus.S5G009100"
Ledus.S5	AUGUSTUS	start_codon	1012963	1012965	.	+	0	transcript_id "Ledus.S5G009100.t1"; gene_id "Ledus.S5G009100"
Ledus.S5	AUGUSTUS	CDS	1012963	1013265	0.97	+	0	transcript_id "Ledus.S5G009100.t1"; gene_id "Ledus.S5G009100"
Ledus.S5	AUGUSTUS	exon	1012963	1013265	.	+	.	transcript_id "Ledus.S5G009100.t1"; gene_id "Ledus.S5G009100"
Ledus.S5	AUGUSTUS	stop_codon	1013266	1013268	.	+	0	transcript_id "Ledus.S5G009100.t1"; gene_id "Ledus.S5G009100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8839.t1 is derived from g9869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2225159	2225989	.	-	.	Ledus.S3G031600
Ledus.S3	AUGUSTUS	transcript	2225159	2225989	.	-	.	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	stop_codon	2225156	2225158	.	-	0	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	CDS	2225159	2225245	1	-	0	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	exon	2225159	2225245	.	-	.	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	intron	2225246	2225345	.	-	.	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	CDS	2225346	2225430	1	-	1	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	exon	2225346	2225430	.	-	.	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	intron	2225431	2225519	.	-	.	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	CDS	2225520	2225578	1	-	0	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	exon	2225520	2225578	.	-	.	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	intron	2225579	2225659	.	-	.	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	CDS	2225660	2225766	1	-	2	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	exon	2225660	2225766	.	-	.	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	intron	2225767	2225844	.	-	.	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	CDS	2225845	2225989	1	-	0	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	exon	2225845	2225989	.	-	.	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
Ledus.S3	AUGUSTUS	start_codon	2225987	2225989	.	-	0	transcript_id "Ledus.S3G031600.t1"; gene_id "Ledus.S3G031600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10932.t1 is derived from g4550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	686640	689519	.	+	.	Ledus.S4G008800
Ledus.S4	AUGUSTUS	transcript	686640	689519	.	+	.	transcript_id "Ledus.S4G008800.t1"; gene_id "Ledus.S4G008800"
Ledus.S4	AUGUSTUS	start_codon	686640	686642	.	+	0	transcript_id "Ledus.S4G008800.t1"; gene_id "Ledus.S4G008800"
Ledus.S4	AUGUSTUS	CDS	686640	689519	1	+	0	transcript_id "Ledus.S4G008800.t1"; gene_id "Ledus.S4G008800"
Ledus.S4	AUGUSTUS	exon	686640	689519	.	+	.	transcript_id "Ledus.S4G008800.t1"; gene_id "Ledus.S4G008800"
Ledus.S4	AUGUSTUS	stop_codon	689520	689522	.	+	0	transcript_id "Ledus.S4G008800.t1"; gene_id "Ledus.S4G008800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10748.t1 is derived from g11779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17464387	17467992	.	-	.	Ledus.S3G222500
Ledus.S3	AUGUSTUS	transcript	17464387	17467992	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	stop_codon	17464384	17464386	.	-	0	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	CDS	17464387	17464926	1	-	0	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	exon	17464387	17464926	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	intron	17464927	17465017	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	CDS	17465018	17465066	1	-	1	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	exon	17465018	17465066	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	intron	17465067	17465157	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	CDS	17465158	17465369	1	-	0	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	exon	17465158	17465369	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	intron	17465370	17465539	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	CDS	17465540	17466820	0.91	-	0	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	exon	17465540	17466820	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	intron	17466821	17466912	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	CDS	17466913	17467369	0.94	-	1	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	exon	17466913	17467369	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	intron	17467370	17467471	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	CDS	17467472	17467636	0.96	-	1	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	exon	17467472	17467636	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	intron	17467637	17467721	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	CDS	17467722	17467782	0.93	-	2	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	exon	17467722	17467782	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	intron	17467783	17467946	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	CDS	17467947	17467992	0.52	-	0	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	exon	17467947	17467992	.	-	.	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
Ledus.S3	AUGUSTUS	start_codon	17467990	17467992	.	-	0	transcript_id "Ledus.S3G222500.t1"; gene_id "Ledus.S3G222500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8621.t1 is derived from g9651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	744675	746897	.	+	.	Ledus.S3G009800
Ledus.S3	AUGUSTUS	transcript	744675	746897	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	start_codon	744675	744677	.	+	0	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	CDS	744675	744890	0.98	+	0	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	exon	744675	744890	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	intron	744891	744978	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	CDS	744979	745047	1	+	0	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	exon	744979	745047	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	intron	745048	745140	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	CDS	745141	745237	0.78	+	0	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	exon	745141	745237	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	intron	745238	745340	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	CDS	745341	745547	0.99	+	2	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	exon	745341	745547	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	intron	745548	745632	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	CDS	745633	745748	1	+	2	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	exon	745633	745748	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	intron	745749	745833	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	CDS	745834	745938	1	+	0	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	exon	745834	745938	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	intron	745939	746031	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	CDS	746032	746201	1	+	0	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	exon	746032	746201	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	intron	746202	746282	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	CDS	746283	746373	1	+	1	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	exon	746283	746373	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	intron	746374	746488	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	CDS	746489	746638	0.94	+	0	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	exon	746489	746638	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	intron	746639	746745	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	CDS	746746	746806	0.96	+	0	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	exon	746746	746806	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	intron	746807	746865	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	CDS	746866	746897	0.96	+	2	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	exon	746866	746897	.	+	.	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
Ledus.S3	AUGUSTUS	stop_codon	746898	746900	.	+	0	transcript_id "Ledus.S3G009800.t1"; gene_id "Ledus.S3G009800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2062.t1 is derived from g8925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14392876	14406045	.	+	.	Ledus.S2G194400
Ledus.S2	AUGUSTUS	transcript	14392876	14406045	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	start_codon	14392876	14392878	.	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14392876	14393245	0.99	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14392876	14393245	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14393246	14393385	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14393386	14396184	0.93	+	2	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14393386	14396184	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14396185	14396428	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14396429	14396954	0.92	+	2	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14396429	14396954	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14396955	14397177	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14397178	14397406	1	+	1	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14397178	14397406	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14397407	14397547	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14397548	14397712	1	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14397548	14397712	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14397713	14397891	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14397892	14398164	0.98	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14397892	14398164	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14398165	14398334	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14398335	14398622	1	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14398335	14398622	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14398623	14398752	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14398753	14399232	1	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14398753	14399232	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14399233	14399344	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14399345	14401039	0.99	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14399345	14401039	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14401040	14401169	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14401170	14401226	1	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14401170	14401226	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14401227	14401372	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14401373	14401780	1	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14401373	14401780	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14401781	14401944	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14401945	14402168	1	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14401945	14402168	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14402169	14402242	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14402243	14402373	1	+	1	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14402243	14402373	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14402374	14402460	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14402461	14402691	1	+	2	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14402461	14402691	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14402692	14402775	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14402776	14402951	0.97	+	2	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14402776	14402951	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14402952	14403070	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14403071	14403118	0.97	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14403071	14403118	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14403119	14403198	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14403199	14403290	0.44	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14403199	14403290	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14403291	14403470	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14403471	14403588	0.48	+	1	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14403471	14403588	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14403589	14403683	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14403684	14403797	0.99	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14403684	14403797	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14403798	14403916	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14403917	14403978	0.99	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14403917	14403978	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14403979	14404093	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14404094	14404177	0.99	+	1	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14404094	14404177	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14404178	14404290	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14404291	14404322	0.87	+	1	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14404291	14404322	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14404323	14404411	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14404412	14404493	1	+	2	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14404412	14404493	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14404494	14404677	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14404678	14404924	1	+	1	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14404678	14404924	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14404925	14405126	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14405127	14405354	1	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14405127	14405354	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14405355	14405438	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14405439	14405710	1	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14405439	14405710	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	intron	14405711	14405792	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	CDS	14405793	14406045	1	+	1	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	exon	14405793	14406045	.	+	.	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
Ledus.S2	AUGUSTUS	stop_codon	14406046	14406048	.	+	0	transcript_id "Ledus.S2G194400.t1"; gene_id "Ledus.S2G194400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5907.t1 is derived from g3350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27735223	27737400	.	+	.	Ledus.S1G332800
Ledus.S1	AUGUSTUS	transcript	27735223	27737400	.	+	.	transcript_id "Ledus.S1G332800.t1"; gene_id "Ledus.S1G332800"
Ledus.S1	AUGUSTUS	start_codon	27735223	27735225	.	+	0	transcript_id "Ledus.S1G332800.t1"; gene_id "Ledus.S1G332800"
Ledus.S1	AUGUSTUS	CDS	27735223	27737400	1	+	0	transcript_id "Ledus.S1G332800.t1"; gene_id "Ledus.S1G332800"
Ledus.S1	AUGUSTUS	exon	27735223	27737400	.	+	.	transcript_id "Ledus.S1G332800.t1"; gene_id "Ledus.S1G332800"
Ledus.S1	AUGUSTUS	stop_codon	27737401	27737403	.	+	0	transcript_id "Ledus.S1G332800.t1"; gene_id "Ledus.S1G332800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12638.t1 is derived from g6260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13556114	13557448	.	+	.	Ledus.S4G179400
Ledus.S4	AUGUSTUS	transcript	13556114	13557448	.	+	.	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	start_codon	13556114	13556116	.	+	0	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	CDS	13556114	13556178	0.87	+	0	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	exon	13556114	13556178	.	+	.	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	intron	13556179	13556392	.	+	.	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	CDS	13556393	13556825	1	+	1	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	exon	13556393	13556825	.	+	.	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	intron	13556826	13556911	.	+	.	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	CDS	13556912	13557024	0.97	+	0	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	exon	13556912	13557024	.	+	.	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	intron	13557025	13557128	.	+	.	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	CDS	13557129	13557210	0.97	+	1	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	exon	13557129	13557210	.	+	.	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	intron	13557211	13557301	.	+	.	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	CDS	13557302	13557448	1	+	0	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	exon	13557302	13557448	.	+	.	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
Ledus.S4	AUGUSTUS	stop_codon	13557449	13557451	.	+	0	transcript_id "Ledus.S4G179400.t1"; gene_id "Ledus.S4G179400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8213.t1 is derived from g12884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9934274	9934714	.	-	.	Ledus.S5G099100
Ledus.S5	AUGUSTUS	transcript	9934274	9934714	.	-	.	transcript_id "Ledus.S5G099100.t1"; gene_id "Ledus.S5G099100"
Ledus.S5	AUGUSTUS	stop_codon	9934271	9934273	.	-	0	transcript_id "Ledus.S5G099100.t1"; gene_id "Ledus.S5G099100"
Ledus.S5	AUGUSTUS	CDS	9934274	9934714	0.6	-	0	transcript_id "Ledus.S5G099100.t1"; gene_id "Ledus.S5G099100"
Ledus.S5	AUGUSTUS	exon	9934274	9934714	.	-	.	transcript_id "Ledus.S5G099100.t1"; gene_id "Ledus.S5G099100"
Ledus.S5	AUGUSTUS	start_codon	9934712	9934714	.	-	0	transcript_id "Ledus.S5G099100.t1"; gene_id "Ledus.S5G099100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2120.t1 is derived from g8983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14809130	14812029	.	+	.	Ledus.S2G200200
Ledus.S2	AUGUSTUS	transcript	14809130	14812029	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	start_codon	14809130	14809132	.	+	0	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	CDS	14809130	14809360	1	+	0	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	exon	14809130	14809360	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	intron	14809361	14809447	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	CDS	14809448	14809532	1	+	0	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	exon	14809448	14809532	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	intron	14809533	14809728	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	CDS	14809729	14809841	1	+	2	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	exon	14809729	14809841	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	intron	14809842	14809983	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	CDS	14809984	14810067	1	+	0	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	exon	14809984	14810067	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	intron	14810068	14810145	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	CDS	14810146	14810274	1	+	0	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	exon	14810146	14810274	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	intron	14810275	14810432	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	CDS	14810433	14810600	1	+	0	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	exon	14810433	14810600	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	intron	14810601	14810750	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	CDS	14810751	14811050	1	+	0	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	exon	14810751	14811050	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	intron	14811051	14811205	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	CDS	14811206	14811277	1	+	0	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	exon	14811206	14811277	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	intron	14811278	14811403	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	CDS	14811404	14811592	1	+	0	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	exon	14811404	14811592	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	intron	14811593	14811691	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	CDS	14811692	14811778	1	+	0	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	exon	14811692	14811778	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	intron	14811779	14811876	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	CDS	14811877	14812029	1	+	0	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	exon	14811877	14812029	.	+	.	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
Ledus.S2	AUGUSTUS	stop_codon	14812030	14812032	.	+	0	transcript_id "Ledus.S2G200200.t1"; gene_id "Ledus.S2G200200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8222.t1 is derived from g12893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10011498	10013435	.	-	.	Ledus.S5G100000
Ledus.S5	AUGUSTUS	transcript	10011498	10013435	.	-	.	transcript_id "Ledus.S5G100000.t1"; gene_id "Ledus.S5G100000"
Ledus.S5	AUGUSTUS	stop_codon	10011495	10011497	.	-	0	transcript_id "Ledus.S5G100000.t1"; gene_id "Ledus.S5G100000"
Ledus.S5	AUGUSTUS	CDS	10011498	10011845	0.99	-	0	transcript_id "Ledus.S5G100000.t1"; gene_id "Ledus.S5G100000"
Ledus.S5	AUGUSTUS	exon	10011498	10011845	.	-	.	transcript_id "Ledus.S5G100000.t1"; gene_id "Ledus.S5G100000"
Ledus.S5	AUGUSTUS	intron	10011846	10011926	.	-	.	transcript_id "Ledus.S5G100000.t1"; gene_id "Ledus.S5G100000"
Ledus.S5	AUGUSTUS	CDS	10011927	10012117	0.74	-	2	transcript_id "Ledus.S5G100000.t1"; gene_id "Ledus.S5G100000"
Ledus.S5	AUGUSTUS	exon	10011927	10012117	.	-	.	transcript_id "Ledus.S5G100000.t1"; gene_id "Ledus.S5G100000"
Ledus.S5	AUGUSTUS	intron	10012118	10012429	.	-	.	transcript_id "Ledus.S5G100000.t1"; gene_id "Ledus.S5G100000"
Ledus.S5	AUGUSTUS	CDS	10012430	10013435	0.87	-	0	transcript_id "Ledus.S5G100000.t1"; gene_id "Ledus.S5G100000"
Ledus.S5	AUGUSTUS	exon	10012430	10013435	.	-	.	transcript_id "Ledus.S5G100000.t1"; gene_id "Ledus.S5G100000"
Ledus.S5	AUGUSTUS	start_codon	10013433	10013435	.	-	0	transcript_id "Ledus.S5G100000.t1"; gene_id "Ledus.S5G100000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10392.t1 is derived from g11422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14774262	14776441	.	-	.	Ledus.S3G186900
Ledus.S3	AUGUSTUS	transcript	14774262	14776441	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	stop_codon	14774259	14774261	.	-	0	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	CDS	14774262	14774330	1	-	0	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	exon	14774262	14774330	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	intron	14774331	14774407	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	CDS	14774408	14774530	1	-	0	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	exon	14774408	14774530	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	intron	14774531	14774633	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	CDS	14774634	14774702	1	-	0	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	exon	14774634	14774702	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	intron	14774703	14774800	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	CDS	14774801	14774921	1	-	1	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	exon	14774801	14774921	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	intron	14774922	14775057	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	CDS	14775058	14775125	0.99	-	0	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	exon	14775058	14775125	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	intron	14775126	14775243	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	CDS	14775244	14775315	1	-	0	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	exon	14775244	14775315	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	intron	14775316	14775390	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	CDS	14775391	14775569	1	-	2	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	exon	14775391	14775569	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	intron	14775570	14775771	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	CDS	14775772	14776007	1	-	1	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	exon	14775772	14776007	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	intron	14776008	14776094	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	CDS	14776095	14776441	0.68	-	0	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	exon	14776095	14776441	.	-	.	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
Ledus.S3	AUGUSTUS	start_codon	14776439	14776441	.	-	0	transcript_id "Ledus.S3G186900.t1"; gene_id "Ledus.S3G186900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11077.t1 is derived from g4695.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1621572	1624322	.	-	.	Ledus.S4G023300
Ledus.S4	AUGUSTUS	transcript	1621572	1624322	.	-	.	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	stop_codon	1621569	1621571	.	-	0	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	CDS	1621572	1621691	0.64	-	0	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	exon	1621572	1621691	.	-	.	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	intron	1621692	1621808	.	-	.	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	CDS	1621809	1623476	0.71	-	0	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	exon	1621809	1623476	.	-	.	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	intron	1623477	1623670	.	-	.	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	CDS	1623671	1623848	0.5	-	1	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	exon	1623671	1623848	.	-	.	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	intron	1623849	1623944	.	-	.	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	CDS	1623945	1623957	0.63	-	2	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	exon	1623945	1623957	.	-	.	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	intron	1623958	1624105	.	-	.	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	CDS	1624106	1624322	0.59	-	0	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	exon	1624106	1624322	.	-	.	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	start_codon	1624320	1624322	.	-	0	transcript_id "Ledus.S4G023300.t1"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	transcript	1621572	1624322	.	-	.	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	stop_codon	1621569	1621571	.	-	0	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	CDS	1621572	1621691	0.48	-	0	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	exon	1621572	1621691	.	-	.	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	intron	1621692	1621808	.	-	.	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	CDS	1621809	1623476	0.45	-	0	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	exon	1621809	1623476	.	-	.	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	intron	1623477	1623573	.	-	.	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	CDS	1623574	1623624	0.81	-	0	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	exon	1623574	1623624	.	-	.	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	intron	1623625	1623670	.	-	.	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	CDS	1623671	1623912	0.81	-	2	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	exon	1623671	1623912	.	-	.	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	intron	1623913	1624105	.	-	.	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	CDS	1624106	1624322	0.57	-	0	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	exon	1624106	1624322	.	-	.	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
Ledus.S4	AUGUSTUS	start_codon	1624320	1624322	.	-	0	transcript_id "Ledus.S4G023300.t2"; gene_id "Ledus.S4G023300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11457.t1 is derived from g5075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4407167	4411800	.	-	.	Ledus.S4G061300
Ledus.S4	AUGUSTUS	transcript	4407167	4411800	.	-	.	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	stop_codon	4407164	4407166	.	-	0	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	CDS	4407167	4407279	1	-	2	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	exon	4407167	4407279	.	-	.	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	intron	4407280	4407355	.	-	.	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	CDS	4407356	4407557	0.97	-	0	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	exon	4407356	4407557	.	-	.	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	intron	4407558	4407658	.	-	.	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	CDS	4407659	4407712	1	-	0	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	exon	4407659	4407712	.	-	.	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	intron	4407713	4407803	.	-	.	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	CDS	4407804	4410848	0.94	-	0	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	exon	4407804	4410848	.	-	.	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	intron	4410849	4411014	.	-	.	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	CDS	4411015	4411800	0.44	-	0	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	exon	4411015	4411800	.	-	.	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
Ledus.S4	AUGUSTUS	start_codon	4411798	4411800	.	-	0	transcript_id "Ledus.S4G061300.t1"; gene_id "Ledus.S4G061300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg109.t1 is derived from g9522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	451141	456297	.	+	.	Ledus.C8G006900
Ledus.C8	AUGUSTUS	transcript	451141	456297	.	+	.	transcript_id "Ledus.C8G006900.t1"; gene_id "Ledus.C8G006900"
Ledus.C8	AUGUSTUS	start_codon	451141	451143	.	+	0	transcript_id "Ledus.C8G006900.t1"; gene_id "Ledus.C8G006900"
Ledus.C8	AUGUSTUS	CDS	451141	456297	0.96	+	0	transcript_id "Ledus.C8G006900.t1"; gene_id "Ledus.C8G006900"
Ledus.C8	AUGUSTUS	exon	451141	456297	.	+	.	transcript_id "Ledus.C8G006900.t1"; gene_id "Ledus.C8G006900"
Ledus.C8	AUGUSTUS	stop_codon	456298	456300	.	+	0	transcript_id "Ledus.C8G006900.t1"; gene_id "Ledus.C8G006900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7762.t1 is derived from g12433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6129137	6130172	.	+	.	Ledus.S5G054000
Ledus.S5	AUGUSTUS	transcript	6129137	6130172	.	+	.	transcript_id "Ledus.S5G054000.t1"; gene_id "Ledus.S5G054000"
Ledus.S5	AUGUSTUS	start_codon	6129137	6129139	.	+	0	transcript_id "Ledus.S5G054000.t1"; gene_id "Ledus.S5G054000"
Ledus.S5	AUGUSTUS	CDS	6129137	6130061	0.96	+	0	transcript_id "Ledus.S5G054000.t1"; gene_id "Ledus.S5G054000"
Ledus.S5	AUGUSTUS	exon	6129137	6130061	.	+	.	transcript_id "Ledus.S5G054000.t1"; gene_id "Ledus.S5G054000"
Ledus.S5	AUGUSTUS	intron	6130062	6130143	.	+	.	transcript_id "Ledus.S5G054000.t1"; gene_id "Ledus.S5G054000"
Ledus.S5	AUGUSTUS	CDS	6130144	6130172	1	+	2	transcript_id "Ledus.S5G054000.t1"; gene_id "Ledus.S5G054000"
Ledus.S5	AUGUSTUS	exon	6130144	6130172	.	+	.	transcript_id "Ledus.S5G054000.t1"; gene_id "Ledus.S5G054000"
Ledus.S5	AUGUSTUS	stop_codon	6130173	6130175	.	+	0	transcript_id "Ledus.S5G054000.t1"; gene_id "Ledus.S5G054000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1940.t1 is derived from g8803.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13606055	13616131	.	-	.	Ledus.S2G182200
Ledus.S2	AUGUSTUS	transcript	13606055	13616131	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	stop_codon	13606052	13606054	.	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13606055	13606631	0.96	-	1	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13606055	13606631	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13606632	13606708	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13606709	13606816	1	-	1	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13606709	13606816	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13606817	13606907	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13606908	13607065	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13606908	13607065	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13607066	13607168	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13607169	13607474	0.97	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13607169	13607474	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13607475	13607558	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13607559	13608029	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13607559	13608029	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13608030	13608161	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13608162	13608305	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13608162	13608305	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13608306	13608403	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13608404	13608571	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13608404	13608571	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13608572	13608672	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13608673	13608927	0.8	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13608673	13608927	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13608928	13609111	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13609112	13609270	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13609112	13609270	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13609271	13609369	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13609370	13609478	1	-	1	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13609370	13609478	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13609479	13609629	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13609630	13609737	1	-	1	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13609630	13609737	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13609738	13609905	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13609906	13610031	1	-	1	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13609906	13610031	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13610032	13610125	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13610126	13610284	1	-	1	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13610126	13610284	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13610285	13610445	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13610446	13610513	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13610446	13610513	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13610514	13610695	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13610696	13610998	0.87	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13610696	13610998	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13610999	13611099	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13611100	13611324	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13611100	13611324	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13611325	13611462	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13611463	13612038	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13611463	13612038	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13612039	13612174	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13612175	13612273	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13612175	13612273	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13612274	13612432	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13612433	13612627	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13612433	13612627	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13612628	13612757	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13612758	13612862	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13612758	13612862	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13612863	13612942	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13612943	13613035	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13612943	13613035	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13613036	13613142	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13613143	13613357	0.99	-	2	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13613143	13613357	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13613358	13613438	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13613439	13613523	0.99	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13613439	13613523	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13613524	13613655	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13613656	13613766	0.96	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13613656	13613766	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13613767	13613847	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13613848	13613905	1	-	1	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13613848	13613905	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13613906	13614102	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13614103	13614221	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13614103	13614221	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13614222	13614311	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13614312	13614380	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13614312	13614380	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13614381	13614477	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13614478	13614552	0.99	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13614478	13614552	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13614553	13614658	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13614659	13614868	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13614659	13614868	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13614869	13614954	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13614955	13615071	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13614955	13615071	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13615072	13615169	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13615170	13615287	1	-	1	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13615170	13615287	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13615288	13615374	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13615375	13615610	1	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13615375	13615610	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13615611	13615702	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13615703	13616131	0.88	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13615703	13616131	.	-	.	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	start_codon	13616129	13616131	.	-	0	transcript_id "Ledus.S2G182200.t1"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	transcript	13606055	13616131	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	stop_codon	13606052	13606054	.	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13606055	13606631	0.96	-	1	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13606055	13606631	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13606632	13606708	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13606709	13606816	1	-	1	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13606709	13606816	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13606817	13606907	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13606908	13607065	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13606908	13607065	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13607066	13607168	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13607169	13607471	0.91	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13607169	13607471	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13607472	13607558	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13607559	13608029	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13607559	13608029	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13608030	13608161	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13608162	13608305	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13608162	13608305	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13608306	13608403	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13608404	13608571	0.99	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13608404	13608571	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13608572	13608672	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13608673	13608927	0.83	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13608673	13608927	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13608928	13609111	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13609112	13609270	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13609112	13609270	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13609271	13609369	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13609370	13609478	1	-	1	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13609370	13609478	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13609479	13609629	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13609630	13609737	1	-	1	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13609630	13609737	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13609738	13609905	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13609906	13610031	1	-	1	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13609906	13610031	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13610032	13610125	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13610126	13610284	1	-	1	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13610126	13610284	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13610285	13610445	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13610446	13610513	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13610446	13610513	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13610514	13610695	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13610696	13610998	0.82	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13610696	13610998	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13610999	13611099	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13611100	13611324	0.99	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13611100	13611324	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13611325	13611462	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13611463	13612038	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13611463	13612038	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13612039	13612174	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13612175	13612273	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13612175	13612273	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13612274	13612432	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13612433	13612627	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13612433	13612627	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13612628	13612757	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13612758	13612862	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13612758	13612862	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13612863	13612942	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13612943	13613035	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13612943	13613035	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13613036	13613142	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13613143	13613357	0.99	-	2	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13613143	13613357	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13613358	13613438	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13613439	13613523	0.99	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13613439	13613523	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13613524	13613655	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13613656	13613766	0.96	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13613656	13613766	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13613767	13613847	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13613848	13613905	1	-	1	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13613848	13613905	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13613906	13614102	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13614103	13614221	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13614103	13614221	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13614222	13614311	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13614312	13614380	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13614312	13614380	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13614381	13614477	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13614478	13614552	0.98	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13614478	13614552	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13614553	13614658	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13614659	13614868	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13614659	13614868	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13614869	13614954	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13614955	13615071	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13614955	13615071	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13615072	13615169	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13615170	13615287	1	-	1	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13615170	13615287	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13615288	13615374	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13615375	13615610	1	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13615375	13615610	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	intron	13615611	13615702	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	CDS	13615703	13616131	0.78	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	exon	13615703	13616131	.	-	.	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
Ledus.S2	AUGUSTUS	start_codon	13616129	13616131	.	-	0	transcript_id "Ledus.S2G182200.t2"; gene_id "Ledus.S2G182200"
# This transcript jg5831.t2 is derived from g3273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5832.t1 is derived from g3274.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27210957	27211723	.	-	.	Ledus.S1G325300
Ledus.S1	AUGUSTUS	transcript	27210957	27211723	.	-	.	transcript_id "Ledus.S1G325300.t1"; gene_id "Ledus.S1G325300"
Ledus.S1	AUGUSTUS	stop_codon	27210954	27210956	.	-	0	transcript_id "Ledus.S1G325300.t1"; gene_id "Ledus.S1G325300"
Ledus.S1	AUGUSTUS	CDS	27210957	27211171	0.48	-	2	transcript_id "Ledus.S1G325300.t1"; gene_id "Ledus.S1G325300"
Ledus.S1	AUGUSTUS	exon	27210957	27211171	.	-	.	transcript_id "Ledus.S1G325300.t1"; gene_id "Ledus.S1G325300"
Ledus.S1	AUGUSTUS	intron	27211172	27211266	.	-	.	transcript_id "Ledus.S1G325300.t1"; gene_id "Ledus.S1G325300"
Ledus.S1	AUGUSTUS	CDS	27211267	27211461	0.36	-	2	transcript_id "Ledus.S1G325300.t1"; gene_id "Ledus.S1G325300"
Ledus.S1	AUGUSTUS	exon	27211267	27211461	.	-	.	transcript_id "Ledus.S1G325300.t1"; gene_id "Ledus.S1G325300"
Ledus.S1	AUGUSTUS	intron	27211462	27211548	.	-	.	transcript_id "Ledus.S1G325300.t1"; gene_id "Ledus.S1G325300"
Ledus.S1	AUGUSTUS	CDS	27211549	27211723	0.47	-	0	transcript_id "Ledus.S1G325300.t1"; gene_id "Ledus.S1G325300"
Ledus.S1	AUGUSTUS	exon	27211549	27211723	.	-	.	transcript_id "Ledus.S1G325300.t1"; gene_id "Ledus.S1G325300"
Ledus.S1	AUGUSTUS	start_codon	27211721	27211723	.	-	0	transcript_id "Ledus.S1G325300.t1"; gene_id "Ledus.S1G325300"
# This transcript jg7563.t2 is derived from g12234.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7564.t1 is derived from g12235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4070033	4071919	.	+	.	Ledus.S5G034200
Ledus.S5	AUGUSTUS	transcript	4070033	4071919	.	+	.	transcript_id "Ledus.S5G034200.t1"; gene_id "Ledus.S5G034200"
Ledus.S5	AUGUSTUS	start_codon	4070033	4070035	.	+	0	transcript_id "Ledus.S5G034200.t1"; gene_id "Ledus.S5G034200"
Ledus.S5	AUGUSTUS	CDS	4070033	4071919	0.53	+	0	transcript_id "Ledus.S5G034200.t1"; gene_id "Ledus.S5G034200"
Ledus.S5	AUGUSTUS	exon	4070033	4071919	.	+	.	transcript_id "Ledus.S5G034200.t1"; gene_id "Ledus.S5G034200"
Ledus.S5	AUGUSTUS	stop_codon	4071920	4071922	.	+	0	transcript_id "Ledus.S5G034200.t1"; gene_id "Ledus.S5G034200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6972.t1 is derived from g6503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	496271	501537	.	+	.	Ledus.C7G003300
Ledus.C7	AUGUSTUS	transcript	496271	501537	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	start_codon	496271	496273	.	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	496271	496335	1	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	496271	496335	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	496336	496457	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	496458	496539	1	+	1	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	496458	496539	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	496540	497214	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	497215	497326	1	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	497215	497326	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	497327	497438	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	497439	497524	1	+	2	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	497439	497524	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	497525	497606	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	497607	497683	1	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	497607	497683	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	497684	497916	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	497917	497973	0.94	+	1	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	497917	497973	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	497974	498079	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	498080	498192	0.71	+	1	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	498080	498192	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	498193	498329	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	498330	498412	1	+	2	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	498330	498412	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	498413	498560	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	498561	498647	1	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	498561	498647	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	498648	498780	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	498781	498861	1	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	498781	498861	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	498862	499029	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	499030	499194	1	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	499030	499194	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	499195	499471	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	499472	499765	1	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	499472	499765	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	499766	499954	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	499955	500203	0.99	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	499955	500203	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	500204	500345	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	500346	500426	0.94	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	500346	500426	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	500427	500529	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	500530	500667	1	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	500530	500667	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	500668	500862	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	500863	500952	0.68	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	500863	500952	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	500953	501054	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	501055	501105	1	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	501055	501105	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	intron	501106	501225	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	CDS	501226	501537	1	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	exon	501226	501537	.	+	.	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
Ledus.C7	AUGUSTUS	stop_codon	501538	501540	.	+	0	transcript_id "Ledus.C7G003300.t1"; gene_id "Ledus.C7G003300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2268.t1 is derived from g9131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16764094	16764363	.	+	.	Ledus.S2G215000
Ledus.S2	AUGUSTUS	transcript	16764094	16764363	.	+	.	transcript_id "Ledus.S2G215000.t1"; gene_id "Ledus.S2G215000"
Ledus.S2	AUGUSTUS	start_codon	16764094	16764096	.	+	0	transcript_id "Ledus.S2G215000.t1"; gene_id "Ledus.S2G215000"
Ledus.S2	AUGUSTUS	CDS	16764094	16764363	1	+	0	transcript_id "Ledus.S2G215000.t1"; gene_id "Ledus.S2G215000"
Ledus.S2	AUGUSTUS	exon	16764094	16764363	.	+	.	transcript_id "Ledus.S2G215000.t1"; gene_id "Ledus.S2G215000"
Ledus.S2	AUGUSTUS	stop_codon	16764364	16764366	.	+	0	transcript_id "Ledus.S2G215000.t1"; gene_id "Ledus.S2G215000"
# This transcript jg4717.t2 is derived from g2155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4718.t1 is derived from g2156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19231880	19232722	.	+	.	Ledus.S1G213900
Ledus.S1	AUGUSTUS	transcript	19231880	19232722	.	+	.	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	start_codon	19231880	19231882	.	+	0	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	CDS	19231880	19231905	0.68	+	0	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	exon	19231880	19231905	.	+	.	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	intron	19231906	19231981	.	+	.	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	CDS	19231982	19232075	1	+	1	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	exon	19231982	19232075	.	+	.	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	intron	19232076	19232146	.	+	.	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	CDS	19232147	19232409	1	+	0	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	exon	19232147	19232409	.	+	.	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	intron	19232410	19232493	.	+	.	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	CDS	19232494	19232722	0.99	+	1	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	exon	19232494	19232722	.	+	.	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
Ledus.S1	AUGUSTUS	stop_codon	19232723	19232725	.	+	0	transcript_id "Ledus.S1G213900.t1"; gene_id "Ledus.S1G213900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3275.t1 is derived from g710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7213262	7213675	.	-	.	Ledus.S1G069600
Ledus.S1	AUGUSTUS	transcript	7213262	7213675	.	-	.	transcript_id "Ledus.S1G069600.t1"; gene_id "Ledus.S1G069600"
Ledus.S1	AUGUSTUS	stop_codon	7213259	7213261	.	-	0	transcript_id "Ledus.S1G069600.t1"; gene_id "Ledus.S1G069600"
Ledus.S1	AUGUSTUS	CDS	7213262	7213675	0.87	-	0	transcript_id "Ledus.S1G069600.t1"; gene_id "Ledus.S1G069600"
Ledus.S1	AUGUSTUS	exon	7213262	7213675	.	-	.	transcript_id "Ledus.S1G069600.t1"; gene_id "Ledus.S1G069600"
Ledus.S1	AUGUSTUS	start_codon	7213673	7213675	.	-	0	transcript_id "Ledus.S1G069600.t1"; gene_id "Ledus.S1G069600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6225.t1 is derived from g3668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29747215	29749371	.	+	.	Ledus.S1G364600
Ledus.S1	AUGUSTUS	transcript	29747215	29749371	.	+	.	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	start_codon	29747215	29747217	.	+	0	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	CDS	29747215	29747267	0.95	+	0	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	exon	29747215	29747267	.	+	.	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	intron	29747268	29747364	.	+	.	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	CDS	29747365	29747557	1	+	1	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	exon	29747365	29747557	.	+	.	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	intron	29747558	29747648	.	+	.	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	CDS	29747649	29747735	1	+	0	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	exon	29747649	29747735	.	+	.	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	intron	29747736	29747848	.	+	.	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	CDS	29747849	29748148	1	+	0	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	exon	29747849	29748148	.	+	.	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	intron	29748149	29748258	.	+	.	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	CDS	29748259	29749371	0.99	+	0	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	exon	29748259	29749371	.	+	.	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
Ledus.S1	AUGUSTUS	stop_codon	29749372	29749374	.	+	0	transcript_id "Ledus.S1G364600.t1"; gene_id "Ledus.S1G364600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9162.t1 is derived from g10192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5056784	5057053	.	+	.	Ledus.S3G063900
Ledus.S3	AUGUSTUS	transcript	5056784	5057053	.	+	.	transcript_id "Ledus.S3G063900.t1"; gene_id "Ledus.S3G063900"
Ledus.S3	AUGUSTUS	start_codon	5056784	5056786	.	+	0	transcript_id "Ledus.S3G063900.t1"; gene_id "Ledus.S3G063900"
Ledus.S3	AUGUSTUS	CDS	5056784	5057053	1	+	0	transcript_id "Ledus.S3G063900.t1"; gene_id "Ledus.S3G063900"
Ledus.S3	AUGUSTUS	exon	5056784	5057053	.	+	.	transcript_id "Ledus.S3G063900.t1"; gene_id "Ledus.S3G063900"
Ledus.S3	AUGUSTUS	stop_codon	5057054	5057056	.	+	0	transcript_id "Ledus.S3G063900.t1"; gene_id "Ledus.S3G063900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5408.t1 is derived from g2847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24019583	24021844	.	+	.	Ledus.S1G282900
Ledus.S1	AUGUSTUS	transcript	24019583	24021844	.	+	.	transcript_id "Ledus.S1G282900.t1"; gene_id "Ledus.S1G282900"
Ledus.S1	AUGUSTUS	start_codon	24019583	24019585	.	+	0	transcript_id "Ledus.S1G282900.t1"; gene_id "Ledus.S1G282900"
Ledus.S1	AUGUSTUS	CDS	24019583	24021844	0.92	+	0	transcript_id "Ledus.S1G282900.t1"; gene_id "Ledus.S1G282900"
Ledus.S1	AUGUSTUS	exon	24019583	24021844	.	+	.	transcript_id "Ledus.S1G282900.t1"; gene_id "Ledus.S1G282900"
Ledus.S1	AUGUSTUS	stop_codon	24021845	24021847	.	+	0	transcript_id "Ledus.S1G282900.t1"; gene_id "Ledus.S1G282900"
# This transcript jg5317.t2 is derived from g2756.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5317.t3 is derived from g2756.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5318.t1 is derived from g2757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23286202	23287084	.	-	.	Ledus.S1G273900
Ledus.S1	AUGUSTUS	transcript	23286202	23287084	.	-	.	transcript_id "Ledus.S1G273900.t1"; gene_id "Ledus.S1G273900"
Ledus.S1	AUGUSTUS	stop_codon	23286199	23286201	.	-	0	transcript_id "Ledus.S1G273900.t1"; gene_id "Ledus.S1G273900"
Ledus.S1	AUGUSTUS	CDS	23286202	23286307	0.23	-	1	transcript_id "Ledus.S1G273900.t1"; gene_id "Ledus.S1G273900"
Ledus.S1	AUGUSTUS	exon	23286202	23286307	.	-	.	transcript_id "Ledus.S1G273900.t1"; gene_id "Ledus.S1G273900"
Ledus.S1	AUGUSTUS	intron	23286308	23286418	.	-	.	transcript_id "Ledus.S1G273900.t1"; gene_id "Ledus.S1G273900"
Ledus.S1	AUGUSTUS	CDS	23286419	23286479	0.23	-	2	transcript_id "Ledus.S1G273900.t1"; gene_id "Ledus.S1G273900"
Ledus.S1	AUGUSTUS	exon	23286419	23286479	.	-	.	transcript_id "Ledus.S1G273900.t1"; gene_id "Ledus.S1G273900"
Ledus.S1	AUGUSTUS	intron	23286480	23286606	.	-	.	transcript_id "Ledus.S1G273900.t1"; gene_id "Ledus.S1G273900"
Ledus.S1	AUGUSTUS	CDS	23286607	23287084	0.25	-	0	transcript_id "Ledus.S1G273900.t1"; gene_id "Ledus.S1G273900"
Ledus.S1	AUGUSTUS	exon	23286607	23287084	.	-	.	transcript_id "Ledus.S1G273900.t1"; gene_id "Ledus.S1G273900"
Ledus.S1	AUGUSTUS	start_codon	23287082	23287084	.	-	0	transcript_id "Ledus.S1G273900.t1"; gene_id "Ledus.S1G273900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6576.t1 is derived from g4019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32461897	32463332	.	+	.	Ledus.S1G399700
Ledus.S1	AUGUSTUS	transcript	32461897	32463332	.	+	.	transcript_id "Ledus.S1G399700.t1"; gene_id "Ledus.S1G399700"
Ledus.S1	AUGUSTUS	start_codon	32461897	32461899	.	+	0	transcript_id "Ledus.S1G399700.t1"; gene_id "Ledus.S1G399700"
Ledus.S1	AUGUSTUS	CDS	32461897	32462756	0.82	+	0	transcript_id "Ledus.S1G399700.t1"; gene_id "Ledus.S1G399700"
Ledus.S1	AUGUSTUS	exon	32461897	32462756	.	+	.	transcript_id "Ledus.S1G399700.t1"; gene_id "Ledus.S1G399700"
Ledus.S1	AUGUSTUS	intron	32462757	32462837	.	+	.	transcript_id "Ledus.S1G399700.t1"; gene_id "Ledus.S1G399700"
Ledus.S1	AUGUSTUS	CDS	32462838	32463030	0.95	+	1	transcript_id "Ledus.S1G399700.t1"; gene_id "Ledus.S1G399700"
Ledus.S1	AUGUSTUS	exon	32462838	32463030	.	+	.	transcript_id "Ledus.S1G399700.t1"; gene_id "Ledus.S1G399700"
Ledus.S1	AUGUSTUS	intron	32463031	32463119	.	+	.	transcript_id "Ledus.S1G399700.t1"; gene_id "Ledus.S1G399700"
Ledus.S1	AUGUSTUS	CDS	32463120	32463332	0.95	+	0	transcript_id "Ledus.S1G399700.t1"; gene_id "Ledus.S1G399700"
Ledus.S1	AUGUSTUS	exon	32463120	32463332	.	+	.	transcript_id "Ledus.S1G399700.t1"; gene_id "Ledus.S1G399700"
Ledus.S1	AUGUSTUS	stop_codon	32463333	32463335	.	+	0	transcript_id "Ledus.S1G399700.t1"; gene_id "Ledus.S1G399700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10556.t1 is derived from g11586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16126813	16131076	.	-	.	Ledus.S3G203300
Ledus.S3	AUGUSTUS	transcript	16126813	16131076	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	stop_codon	16126810	16126812	.	-	0	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16126813	16126921	0.31	-	1	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16126813	16126921	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16126922	16127037	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16127038	16127440	0.37	-	2	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16127038	16127440	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16127441	16127764	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16127765	16128012	0.71	-	1	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16127765	16128012	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16128013	16128124	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16128125	16128222	1	-	0	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16128125	16128222	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16128223	16128304	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16128305	16128441	1	-	2	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16128305	16128441	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16128442	16128582	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16128583	16128758	1	-	1	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16128583	16128758	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16128759	16128884	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16128885	16129039	1	-	0	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16128885	16129039	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16129040	16129115	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16129116	16129221	1	-	1	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16129116	16129221	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16129222	16129317	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16129318	16129409	1	-	0	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16129318	16129409	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16129410	16129537	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16129538	16129659	1	-	2	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16129538	16129659	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16129660	16129802	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16129803	16129903	1	-	1	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16129803	16129903	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16129904	16129984	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16129985	16130204	0.96	-	2	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16129985	16130204	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16130205	16130353	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16130354	16130495	1	-	0	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16130354	16130495	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	intron	16130496	16130773	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	CDS	16130774	16131076	0.53	-	0	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	exon	16130774	16131076	.	-	.	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
Ledus.S3	AUGUSTUS	start_codon	16131074	16131076	.	-	0	transcript_id "Ledus.S3G203300.t1"; gene_id "Ledus.S3G203300"
# This transcript jg1410.t2 is derived from g8271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1411.t1 is derived from g8272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9933658	9935651	.	-	.	Ledus.S2G129300
Ledus.S2	AUGUSTUS	transcript	9933658	9935651	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	stop_codon	9933655	9933657	.	-	0	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	CDS	9933658	9933714	1	-	0	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	exon	9933658	9933714	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	intron	9933715	9933808	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	CDS	9933809	9933963	1	-	2	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	exon	9933809	9933963	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	intron	9933964	9934050	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	CDS	9934051	9934151	1	-	1	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	exon	9934051	9934151	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	intron	9934152	9934255	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	CDS	9934256	9934380	1	-	0	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	exon	9934256	9934380	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	intron	9934381	9934478	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	CDS	9934479	9934603	1	-	2	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	exon	9934479	9934603	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	intron	9934604	9934683	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	CDS	9934684	9934826	1	-	1	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	exon	9934684	9934826	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	intron	9934827	9934919	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	CDS	9934920	9934968	1	-	2	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	exon	9934920	9934968	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	intron	9934969	9935046	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	CDS	9935047	9935107	1	-	0	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	exon	9935047	9935107	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	intron	9935108	9935200	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	CDS	9935201	9935409	1	-	2	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	exon	9935201	9935409	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	intron	9935410	9935488	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	CDS	9935489	9935651	0.61	-	0	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	exon	9935489	9935651	.	-	.	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
Ledus.S2	AUGUSTUS	start_codon	9935649	9935651	.	-	0	transcript_id "Ledus.S2G129300.t1"; gene_id "Ledus.S2G129300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3219.t1 is derived from g654.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6970399	6972264	.	-	.	Ledus.S1G064000
Ledus.S1	AUGUSTUS	transcript	6970399	6972264	.	-	.	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	stop_codon	6970396	6970398	.	-	0	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	CDS	6970399	6970443	1	-	0	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	exon	6970399	6970443	.	-	.	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	intron	6970444	6970526	.	-	.	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	CDS	6970527	6970608	1	-	1	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	exon	6970527	6970608	.	-	.	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	intron	6970609	6970697	.	-	.	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	CDS	6970698	6970977	1	-	2	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	exon	6970698	6970977	.	-	.	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	intron	6970978	6971058	.	-	.	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	CDS	6971059	6971229	1	-	2	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	exon	6971059	6971229	.	-	.	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	intron	6971230	6971312	.	-	.	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	CDS	6971313	6971598	1	-	0	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	exon	6971313	6971598	.	-	.	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	intron	6971599	6971667	.	-	.	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	CDS	6971668	6972264	0.96	-	0	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	exon	6971668	6972264	.	-	.	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	start_codon	6972262	6972264	.	-	0	transcript_id "Ledus.S1G064000.t1"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	transcript	6970399	6972264	.	-	.	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	stop_codon	6970396	6970398	.	-	0	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	CDS	6970399	6970443	1	-	0	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	exon	6970399	6970443	.	-	.	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	intron	6970444	6970526	.	-	.	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	CDS	6970527	6970599	0.61	-	1	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	exon	6970527	6970599	.	-	.	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	intron	6970600	6970697	.	-	.	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	CDS	6970698	6970977	0.98	-	2	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	exon	6970698	6970977	.	-	.	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	intron	6970978	6971058	.	-	.	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	CDS	6971059	6971229	1	-	2	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	exon	6971059	6971229	.	-	.	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	intron	6971230	6971312	.	-	.	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	CDS	6971313	6971598	1	-	0	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	exon	6971313	6971598	.	-	.	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	intron	6971599	6971667	.	-	.	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	CDS	6971668	6972264	0.89	-	0	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	exon	6971668	6972264	.	-	.	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
Ledus.S1	AUGUSTUS	start_codon	6972262	6972264	.	-	0	transcript_id "Ledus.S1G064000.t2"; gene_id "Ledus.S1G064000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg183.t1 is derived from g7044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	606911	609044	.	+	.	Ledus.S2G006500
Ledus.S2	AUGUSTUS	transcript	606911	609044	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	start_codon	606911	606913	.	+	0	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	CDS	606911	607115	1	+	0	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	exon	606911	607115	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	intron	607116	607224	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	CDS	607225	607301	1	+	2	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	exon	607225	607301	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	intron	607302	607447	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	CDS	607448	607570	0.86	+	0	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	exon	607448	607570	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	intron	607571	607685	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	CDS	607686	607790	0.99	+	0	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	exon	607686	607790	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	intron	607791	607891	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	CDS	607892	607964	1	+	0	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	exon	607892	607964	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	intron	607965	608083	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	CDS	608084	608155	1	+	2	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	exon	608084	608155	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	intron	608156	608349	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	CDS	608350	608542	1	+	2	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	exon	608350	608542	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	intron	608543	608691	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	CDS	608692	608845	1	+	1	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	exon	608692	608845	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	intron	608846	608981	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	CDS	608982	609044	1	+	0	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	exon	608982	609044	.	+	.	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
Ledus.S2	AUGUSTUS	stop_codon	609045	609047	.	+	0	transcript_id "Ledus.S2G006500.t1"; gene_id "Ledus.S2G006500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1399.t1 is derived from g8260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9830839	9834715	.	-	.	Ledus.S2G128100
Ledus.S2	AUGUSTUS	transcript	9830839	9834715	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	stop_codon	9830836	9830838	.	-	0	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	CDS	9830839	9830979	0.69	-	0	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	exon	9830839	9830979	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	intron	9830980	9831370	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	CDS	9831371	9831427	1	-	0	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	exon	9831371	9831427	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	intron	9831428	9831547	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	CDS	9831548	9831859	0.99	-	0	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	exon	9831548	9831859	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	intron	9831860	9832102	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	CDS	9832103	9832234	1	-	0	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	exon	9832103	9832234	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	intron	9832235	9832398	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	CDS	9832399	9833511	1	-	0	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	exon	9832399	9833511	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	intron	9833512	9833637	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	CDS	9833638	9833696	1	-	2	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	exon	9833638	9833696	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	intron	9833697	9834093	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	CDS	9834094	9834289	1	-	0	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	exon	9834094	9834289	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	intron	9834290	9834613	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	CDS	9834614	9834715	0.99	-	0	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	exon	9834614	9834715	.	-	.	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
Ledus.S2	AUGUSTUS	start_codon	9834713	9834715	.	-	0	transcript_id "Ledus.S2G128100.t1"; gene_id "Ledus.S2G128100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg745.t1 is derived from g7606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4767742	4768789	.	-	.	Ledus.S2G062700
Ledus.S2	AUGUSTUS	transcript	4767742	4768789	.	-	.	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	stop_codon	4767739	4767741	.	-	0	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	CDS	4767742	4767927	1	-	0	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	exon	4767742	4767927	.	-	.	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	intron	4767928	4768051	.	-	.	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	CDS	4768052	4768156	1	-	0	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	exon	4768052	4768156	.	-	.	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	intron	4768157	4768264	.	-	.	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	CDS	4768265	4768455	0.97	-	2	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	exon	4768265	4768455	.	-	.	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	intron	4768456	4768572	.	-	.	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	CDS	4768573	4768620	1	-	2	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	exon	4768573	4768620	.	-	.	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	intron	4768621	4768770	.	-	.	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	CDS	4768771	4768789	0.99	-	0	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	exon	4768771	4768789	.	-	.	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	start_codon	4768787	4768789	.	-	0	transcript_id "Ledus.S2G062700.t1"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	transcript	4767742	4768789	.	-	.	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	stop_codon	4767739	4767741	.	-	0	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	CDS	4767742	4767927	0.99	-	0	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	exon	4767742	4767927	.	-	.	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	intron	4767928	4768051	.	-	.	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	CDS	4768052	4768156	0.99	-	0	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	exon	4768052	4768156	.	-	.	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	intron	4768157	4768264	.	-	.	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	CDS	4768265	4768455	0.97	-	2	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	exon	4768265	4768455	.	-	.	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	intron	4768456	4768572	.	-	.	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	CDS	4768573	4768632	1	-	2	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	exon	4768573	4768632	.	-	.	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	intron	4768633	4768770	.	-	.	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	CDS	4768771	4768789	0.97	-	0	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	exon	4768771	4768789	.	-	.	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
Ledus.S2	AUGUSTUS	start_codon	4768787	4768789	.	-	0	transcript_id "Ledus.S2G062700.t2"; gene_id "Ledus.S2G062700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8933.t1 is derived from g9963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3288528	3288824	.	-	.	Ledus.S3G041000
Ledus.S3	AUGUSTUS	transcript	3288528	3288824	.	-	.	transcript_id "Ledus.S3G041000.t1"; gene_id "Ledus.S3G041000"
Ledus.S3	AUGUSTUS	stop_codon	3288525	3288527	.	-	0	transcript_id "Ledus.S3G041000.t1"; gene_id "Ledus.S3G041000"
Ledus.S3	AUGUSTUS	CDS	3288528	3288824	1	-	0	transcript_id "Ledus.S3G041000.t1"; gene_id "Ledus.S3G041000"
Ledus.S3	AUGUSTUS	exon	3288528	3288824	.	-	.	transcript_id "Ledus.S3G041000.t1"; gene_id "Ledus.S3G041000"
Ledus.S3	AUGUSTUS	start_codon	3288822	3288824	.	-	0	transcript_id "Ledus.S3G041000.t1"; gene_id "Ledus.S3G041000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2147.t1 is derived from g9010.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15288464	15289628	.	+	.	Ledus.S2G202900
Ledus.S2	AUGUSTUS	transcript	15288464	15289628	.	+	.	transcript_id "Ledus.S2G202900.t1"; gene_id "Ledus.S2G202900"
Ledus.S2	AUGUSTUS	start_codon	15288464	15288466	.	+	0	transcript_id "Ledus.S2G202900.t1"; gene_id "Ledus.S2G202900"
Ledus.S2	AUGUSTUS	CDS	15288464	15288807	0.38	+	0	transcript_id "Ledus.S2G202900.t1"; gene_id "Ledus.S2G202900"
Ledus.S2	AUGUSTUS	exon	15288464	15288807	.	+	.	transcript_id "Ledus.S2G202900.t1"; gene_id "Ledus.S2G202900"
Ledus.S2	AUGUSTUS	intron	15288808	15288853	.	+	.	transcript_id "Ledus.S2G202900.t1"; gene_id "Ledus.S2G202900"
Ledus.S2	AUGUSTUS	CDS	15288854	15289628	0.51	+	1	transcript_id "Ledus.S2G202900.t1"; gene_id "Ledus.S2G202900"
Ledus.S2	AUGUSTUS	exon	15288854	15289628	.	+	.	transcript_id "Ledus.S2G202900.t1"; gene_id "Ledus.S2G202900"
Ledus.S2	AUGUSTUS	stop_codon	15289629	15289631	.	+	0	transcript_id "Ledus.S2G202900.t1"; gene_id "Ledus.S2G202900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4841.t1 is derived from g2279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20088680	20089317	.	-	.	Ledus.S1G226200
Ledus.S1	AUGUSTUS	transcript	20088680	20089317	.	-	.	transcript_id "Ledus.S1G226200.t1"; gene_id "Ledus.S1G226200"
Ledus.S1	AUGUSTUS	stop_codon	20088677	20088679	.	-	0	transcript_id "Ledus.S1G226200.t1"; gene_id "Ledus.S1G226200"
Ledus.S1	AUGUSTUS	CDS	20088680	20088889	1	-	0	transcript_id "Ledus.S1G226200.t1"; gene_id "Ledus.S1G226200"
Ledus.S1	AUGUSTUS	exon	20088680	20088889	.	-	.	transcript_id "Ledus.S1G226200.t1"; gene_id "Ledus.S1G226200"
Ledus.S1	AUGUSTUS	intron	20088890	20088969	.	-	.	transcript_id "Ledus.S1G226200.t1"; gene_id "Ledus.S1G226200"
Ledus.S1	AUGUSTUS	CDS	20088970	20089317	0.84	-	0	transcript_id "Ledus.S1G226200.t1"; gene_id "Ledus.S1G226200"
Ledus.S1	AUGUSTUS	exon	20088970	20089317	.	-	.	transcript_id "Ledus.S1G226200.t1"; gene_id "Ledus.S1G226200"
Ledus.S1	AUGUSTUS	start_codon	20089315	20089317	.	-	0	transcript_id "Ledus.S1G226200.t1"; gene_id "Ledus.S1G226200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4289.t1 is derived from g1725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16073702	16074692	.	+	.	Ledus.S1G171000
Ledus.S1	AUGUSTUS	transcript	16073702	16074692	.	+	.	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	start_codon	16073702	16073704	.	+	0	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	CDS	16073702	16073907	0.99	+	0	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	exon	16073702	16073907	.	+	.	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	intron	16073908	16073983	.	+	.	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	CDS	16073984	16074138	0.99	+	1	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	exon	16073984	16074138	.	+	.	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	intron	16074139	16074244	.	+	.	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	CDS	16074245	16074301	0.62	+	2	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	exon	16074245	16074301	.	+	.	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	intron	16074302	16074411	.	+	.	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	CDS	16074412	16074692	0.97	+	2	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	exon	16074412	16074692	.	+	.	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
Ledus.S1	AUGUSTUS	stop_codon	16074693	16074695	.	+	0	transcript_id "Ledus.S1G171000.t1"; gene_id "Ledus.S1G171000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7572.t1 is derived from g12243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4096685	4097785	.	+	.	Ledus.S5G035000
Ledus.S5	AUGUSTUS	transcript	4096685	4097785	.	+	.	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	start_codon	4096685	4096687	.	+	0	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	CDS	4096685	4096783	0.9	+	0	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	exon	4096685	4096783	.	+	.	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	intron	4096784	4096866	.	+	.	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	CDS	4096867	4097027	1	+	0	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	exon	4096867	4097027	.	+	.	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	intron	4097028	4097135	.	+	.	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	CDS	4097136	4097276	1	+	1	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	exon	4097136	4097276	.	+	.	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	intron	4097277	4097361	.	+	.	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	CDS	4097362	4097785	1	+	1	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	exon	4097362	4097785	.	+	.	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
Ledus.S5	AUGUSTUS	stop_codon	4097786	4097788	.	+	0	transcript_id "Ledus.S5G035000.t1"; gene_id "Ledus.S5G035000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9587.t1 is derived from g10617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8108831	8109292	.	+	.	Ledus.S3G106400
Ledus.S3	AUGUSTUS	transcript	8108831	8109292	.	+	.	transcript_id "Ledus.S3G106400.t1"; gene_id "Ledus.S3G106400"
Ledus.S3	AUGUSTUS	start_codon	8108831	8108833	.	+	0	transcript_id "Ledus.S3G106400.t1"; gene_id "Ledus.S3G106400"
Ledus.S3	AUGUSTUS	CDS	8108831	8109292	0.71	+	0	transcript_id "Ledus.S3G106400.t1"; gene_id "Ledus.S3G106400"
Ledus.S3	AUGUSTUS	exon	8108831	8109292	.	+	.	transcript_id "Ledus.S3G106400.t1"; gene_id "Ledus.S3G106400"
Ledus.S3	AUGUSTUS	stop_codon	8109293	8109295	.	+	0	transcript_id "Ledus.S3G106400.t1"; gene_id "Ledus.S3G106400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1214.t1 is derived from g8075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8652355	8652992	.	+	.	Ledus.S2G109600
Ledus.S2	AUGUSTUS	transcript	8652355	8652992	.	+	.	transcript_id "Ledus.S2G109600.t1"; gene_id "Ledus.S2G109600"
Ledus.S2	AUGUSTUS	start_codon	8652355	8652357	.	+	0	transcript_id "Ledus.S2G109600.t1"; gene_id "Ledus.S2G109600"
Ledus.S2	AUGUSTUS	CDS	8652355	8652477	1	+	0	transcript_id "Ledus.S2G109600.t1"; gene_id "Ledus.S2G109600"
Ledus.S2	AUGUSTUS	exon	8652355	8652477	.	+	.	transcript_id "Ledus.S2G109600.t1"; gene_id "Ledus.S2G109600"
Ledus.S2	AUGUSTUS	intron	8652478	8652642	.	+	.	transcript_id "Ledus.S2G109600.t1"; gene_id "Ledus.S2G109600"
Ledus.S2	AUGUSTUS	CDS	8652643	8652780	1	+	0	transcript_id "Ledus.S2G109600.t1"; gene_id "Ledus.S2G109600"
Ledus.S2	AUGUSTUS	exon	8652643	8652780	.	+	.	transcript_id "Ledus.S2G109600.t1"; gene_id "Ledus.S2G109600"
Ledus.S2	AUGUSTUS	intron	8652781	8652866	.	+	.	transcript_id "Ledus.S2G109600.t1"; gene_id "Ledus.S2G109600"
Ledus.S2	AUGUSTUS	CDS	8652867	8652992	0.86	+	0	transcript_id "Ledus.S2G109600.t1"; gene_id "Ledus.S2G109600"
Ledus.S2	AUGUSTUS	exon	8652867	8652992	.	+	.	transcript_id "Ledus.S2G109600.t1"; gene_id "Ledus.S2G109600"
Ledus.S2	AUGUSTUS	stop_codon	8652993	8652995	.	+	0	transcript_id "Ledus.S2G109600.t1"; gene_id "Ledus.S2G109600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3643.t1 is derived from g1079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10359493	10360738	.	+	.	Ledus.S1G106400
Ledus.S1	AUGUSTUS	transcript	10359493	10360738	.	+	.	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	start_codon	10359493	10359495	.	+	0	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	CDS	10359493	10359613	0.91	+	0	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	exon	10359493	10359613	.	+	.	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	intron	10359614	10359698	.	+	.	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	CDS	10359699	10359871	1	+	2	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	exon	10359699	10359871	.	+	.	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	intron	10359872	10359949	.	+	.	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	CDS	10359950	10360141	1	+	0	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	exon	10359950	10360141	.	+	.	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	intron	10360142	10360225	.	+	.	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	CDS	10360226	10360388	1	+	0	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	exon	10360226	10360388	.	+	.	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	intron	10360389	10360478	.	+	.	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	CDS	10360479	10360738	0.97	+	2	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	exon	10360479	10360738	.	+	.	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
Ledus.S1	AUGUSTUS	stop_codon	10360739	10360741	.	+	0	transcript_id "Ledus.S1G106400.t1"; gene_id "Ledus.S1G106400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11270.t1 is derived from g4888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3119111	3120142	.	-	.	Ledus.S4G042600
Ledus.S4	AUGUSTUS	transcript	3119111	3120142	.	-	.	transcript_id "Ledus.S4G042600.t1"; gene_id "Ledus.S4G042600"
Ledus.S4	AUGUSTUS	stop_codon	3119108	3119110	.	-	0	transcript_id "Ledus.S4G042600.t1"; gene_id "Ledus.S4G042600"
Ledus.S4	AUGUSTUS	CDS	3119111	3119360	0.61	-	1	transcript_id "Ledus.S4G042600.t1"; gene_id "Ledus.S4G042600"
Ledus.S4	AUGUSTUS	exon	3119111	3119360	.	-	.	transcript_id "Ledus.S4G042600.t1"; gene_id "Ledus.S4G042600"
Ledus.S4	AUGUSTUS	intron	3119361	3119474	.	-	.	transcript_id "Ledus.S4G042600.t1"; gene_id "Ledus.S4G042600"
Ledus.S4	AUGUSTUS	CDS	3119475	3119649	0.39	-	2	transcript_id "Ledus.S4G042600.t1"; gene_id "Ledus.S4G042600"
Ledus.S4	AUGUSTUS	exon	3119475	3119649	.	-	.	transcript_id "Ledus.S4G042600.t1"; gene_id "Ledus.S4G042600"
Ledus.S4	AUGUSTUS	intron	3119650	3119799	.	-	.	transcript_id "Ledus.S4G042600.t1"; gene_id "Ledus.S4G042600"
Ledus.S4	AUGUSTUS	CDS	3119800	3120142	0.57	-	0	transcript_id "Ledus.S4G042600.t1"; gene_id "Ledus.S4G042600"
Ledus.S4	AUGUSTUS	exon	3119800	3120142	.	-	.	transcript_id "Ledus.S4G042600.t1"; gene_id "Ledus.S4G042600"
Ledus.S4	AUGUSTUS	start_codon	3120140	3120142	.	-	0	transcript_id "Ledus.S4G042600.t1"; gene_id "Ledus.S4G042600"
# This transcript jg7183.t2 is derived from g6714.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7184.t1 is derived from g6715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2029225	2030746	.	-	.	Ledus.C7G024500
Ledus.C7	AUGUSTUS	transcript	2029225	2030746	.	-	.	transcript_id "Ledus.C7G024500.t1"; gene_id "Ledus.C7G024500"
Ledus.C7	AUGUSTUS	stop_codon	2029222	2029224	.	-	0	transcript_id "Ledus.C7G024500.t1"; gene_id "Ledus.C7G024500"
Ledus.C7	AUGUSTUS	CDS	2029225	2029792	0.64	-	1	transcript_id "Ledus.C7G024500.t1"; gene_id "Ledus.C7G024500"
Ledus.C7	AUGUSTUS	exon	2029225	2029792	.	-	.	transcript_id "Ledus.C7G024500.t1"; gene_id "Ledus.C7G024500"
Ledus.C7	AUGUSTUS	intron	2029793	2029913	.	-	.	transcript_id "Ledus.C7G024500.t1"; gene_id "Ledus.C7G024500"
Ledus.C7	AUGUSTUS	CDS	2029914	2030746	0.85	-	0	transcript_id "Ledus.C7G024500.t1"; gene_id "Ledus.C7G024500"
Ledus.C7	AUGUSTUS	exon	2029914	2030746	.	-	.	transcript_id "Ledus.C7G024500.t1"; gene_id "Ledus.C7G024500"
Ledus.C7	AUGUSTUS	start_codon	2030744	2030746	.	-	0	transcript_id "Ledus.C7G024500.t1"; gene_id "Ledus.C7G024500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11725.t1 is derived from g5344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6276652	6278017	.	-	.	Ledus.S4G088100
Ledus.S4	AUGUSTUS	transcript	6276652	6278017	.	-	.	transcript_id "Ledus.S4G088100.t1"; gene_id "Ledus.S4G088100"
Ledus.S4	AUGUSTUS	stop_codon	6276649	6276651	.	-	0	transcript_id "Ledus.S4G088100.t1"; gene_id "Ledus.S4G088100"
Ledus.S4	AUGUSTUS	CDS	6276652	6277156	0.99	-	1	transcript_id "Ledus.S4G088100.t1"; gene_id "Ledus.S4G088100"
Ledus.S4	AUGUSTUS	exon	6276652	6277156	.	-	.	transcript_id "Ledus.S4G088100.t1"; gene_id "Ledus.S4G088100"
Ledus.S4	AUGUSTUS	intron	6277157	6277316	.	-	.	transcript_id "Ledus.S4G088100.t1"; gene_id "Ledus.S4G088100"
Ledus.S4	AUGUSTUS	CDS	6277317	6278017	0.62	-	0	transcript_id "Ledus.S4G088100.t1"; gene_id "Ledus.S4G088100"
Ledus.S4	AUGUSTUS	exon	6277317	6278017	.	-	.	transcript_id "Ledus.S4G088100.t1"; gene_id "Ledus.S4G088100"
Ledus.S4	AUGUSTUS	start_codon	6278015	6278017	.	-	0	transcript_id "Ledus.S4G088100.t1"; gene_id "Ledus.S4G088100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2347.t1 is derived from g9210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17378485	17381311	.	+	.	Ledus.S2G222900
Ledus.S2	AUGUSTUS	transcript	17378485	17381311	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	start_codon	17378485	17378487	.	+	0	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	CDS	17378485	17378877	0.96	+	0	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	exon	17378485	17378877	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	intron	17378878	17378957	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	CDS	17378958	17379185	1	+	0	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	exon	17378958	17379185	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	intron	17379186	17379302	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	CDS	17379303	17379638	1	+	0	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	exon	17379303	17379638	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	intron	17379639	17379722	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	CDS	17379723	17380278	1	+	0	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	exon	17379723	17380278	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	intron	17380279	17380423	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	CDS	17380424	17380610	1	+	2	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	exon	17380424	17380610	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	intron	17380611	17380711	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	CDS	17380712	17381078	0.99	+	1	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	exon	17380712	17381078	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	intron	17381079	17381185	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	CDS	17381186	17381311	1	+	0	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	exon	17381186	17381311	.	+	.	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
Ledus.S2	AUGUSTUS	stop_codon	17381312	17381314	.	+	0	transcript_id "Ledus.S2G222900.t1"; gene_id "Ledus.S2G222900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10894.t1 is derived from g4512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	348555	349077	.	-	.	Ledus.S4G005000
Ledus.S4	AUGUSTUS	transcript	348555	349077	.	-	.	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	stop_codon	348552	348554	.	-	0	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	CDS	348555	348565	0.61	-	2	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	exon	348555	348565	.	-	.	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	intron	348566	348733	.	-	.	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	CDS	348734	348797	0.64	-	0	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	exon	348734	348797	.	-	.	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	intron	348798	348873	.	-	.	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	CDS	348874	348936	0.56	-	0	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	exon	348874	348936	.	-	.	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	intron	348937	349017	.	-	.	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	CDS	349018	349077	0.96	-	0	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	exon	349018	349077	.	-	.	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
Ledus.S4	AUGUSTUS	start_codon	349075	349077	.	-	0	transcript_id "Ledus.S4G005000.t1"; gene_id "Ledus.S4G005000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12045.t1 is derived from g5664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9163010	9163498	.	-	.	Ledus.S4G120100
Ledus.S4	AUGUSTUS	transcript	9163010	9163498	.	-	.	transcript_id "Ledus.S4G120100.t1"; gene_id "Ledus.S4G120100"
Ledus.S4	AUGUSTUS	stop_codon	9163007	9163009	.	-	0	transcript_id "Ledus.S4G120100.t1"; gene_id "Ledus.S4G120100"
Ledus.S4	AUGUSTUS	CDS	9163010	9163498	0.93	-	0	transcript_id "Ledus.S4G120100.t1"; gene_id "Ledus.S4G120100"
Ledus.S4	AUGUSTUS	exon	9163010	9163498	.	-	.	transcript_id "Ledus.S4G120100.t1"; gene_id "Ledus.S4G120100"
Ledus.S4	AUGUSTUS	start_codon	9163496	9163498	.	-	0	transcript_id "Ledus.S4G120100.t1"; gene_id "Ledus.S4G120100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3498.t1 is derived from g933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8804415	8805243	.	+	.	Ledus.S1G091900
Ledus.S1	AUGUSTUS	transcript	8804415	8805243	.	+	.	transcript_id "Ledus.S1G091900.t1"; gene_id "Ledus.S1G091900"
Ledus.S1	AUGUSTUS	start_codon	8804415	8804417	.	+	0	transcript_id "Ledus.S1G091900.t1"; gene_id "Ledus.S1G091900"
Ledus.S1	AUGUSTUS	CDS	8804415	8804933	0.72	+	0	transcript_id "Ledus.S1G091900.t1"; gene_id "Ledus.S1G091900"
Ledus.S1	AUGUSTUS	exon	8804415	8804933	.	+	.	transcript_id "Ledus.S1G091900.t1"; gene_id "Ledus.S1G091900"
Ledus.S1	AUGUSTUS	intron	8804934	8805048	.	+	.	transcript_id "Ledus.S1G091900.t1"; gene_id "Ledus.S1G091900"
Ledus.S1	AUGUSTUS	CDS	8805049	8805243	1	+	0	transcript_id "Ledus.S1G091900.t1"; gene_id "Ledus.S1G091900"
Ledus.S1	AUGUSTUS	exon	8805049	8805243	.	+	.	transcript_id "Ledus.S1G091900.t1"; gene_id "Ledus.S1G091900"
Ledus.S1	AUGUSTUS	stop_codon	8805244	8805246	.	+	0	transcript_id "Ledus.S1G091900.t1"; gene_id "Ledus.S1G091900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3926.t1 is derived from g1362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13580843	13582230	.	-	.	Ledus.S1G134700
Ledus.S1	AUGUSTUS	transcript	13580843	13582230	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	stop_codon	13580840	13580842	.	-	0	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	CDS	13580843	13580979	1	-	2	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	exon	13580843	13580979	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	intron	13580980	13581075	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	CDS	13581076	13581132	1	-	2	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	exon	13581076	13581132	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	intron	13581133	13581212	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	CDS	13581213	13581335	1	-	2	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	exon	13581213	13581335	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	intron	13581336	13581416	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	CDS	13581417	13581471	1	-	0	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	exon	13581417	13581471	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	intron	13581472	13581562	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	CDS	13581563	13581652	1	-	0	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	exon	13581563	13581652	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	intron	13581653	13581724	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	CDS	13581725	13581872	1	-	1	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	exon	13581725	13581872	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	intron	13581873	13581952	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	CDS	13581953	13582230	0.75	-	0	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	exon	13581953	13582230	.	-	.	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
Ledus.S1	AUGUSTUS	start_codon	13582228	13582230	.	-	0	transcript_id "Ledus.S1G134700.t1"; gene_id "Ledus.S1G134700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2500.t1 is derived from g9363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18488805	18489232	.	-	.	Ledus.S2G238200
Ledus.S2	AUGUSTUS	transcript	18488805	18489232	.	-	.	transcript_id "Ledus.S2G238200.t1"; gene_id "Ledus.S2G238200"
Ledus.S2	AUGUSTUS	stop_codon	18488802	18488804	.	-	0	transcript_id "Ledus.S2G238200.t1"; gene_id "Ledus.S2G238200"
Ledus.S2	AUGUSTUS	CDS	18488805	18488833	1	-	2	transcript_id "Ledus.S2G238200.t1"; gene_id "Ledus.S2G238200"
Ledus.S2	AUGUSTUS	exon	18488805	18488833	.	-	.	transcript_id "Ledus.S2G238200.t1"; gene_id "Ledus.S2G238200"
Ledus.S2	AUGUSTUS	intron	18488834	18488925	.	-	.	transcript_id "Ledus.S2G238200.t1"; gene_id "Ledus.S2G238200"
Ledus.S2	AUGUSTUS	CDS	18488926	18489068	1	-	1	transcript_id "Ledus.S2G238200.t1"; gene_id "Ledus.S2G238200"
Ledus.S2	AUGUSTUS	exon	18488926	18489068	.	-	.	transcript_id "Ledus.S2G238200.t1"; gene_id "Ledus.S2G238200"
Ledus.S2	AUGUSTUS	intron	18489069	18489161	.	-	.	transcript_id "Ledus.S2G238200.t1"; gene_id "Ledus.S2G238200"
Ledus.S2	AUGUSTUS	CDS	18489162	18489232	1	-	0	transcript_id "Ledus.S2G238200.t1"; gene_id "Ledus.S2G238200"
Ledus.S2	AUGUSTUS	exon	18489162	18489232	.	-	.	transcript_id "Ledus.S2G238200.t1"; gene_id "Ledus.S2G238200"
Ledus.S2	AUGUSTUS	start_codon	18489230	18489232	.	-	0	transcript_id "Ledus.S2G238200.t1"; gene_id "Ledus.S2G238200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2689.t1 is derived from g122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1804869	1808562	.	-	.	Ledus.S1G011000
Ledus.S1	AUGUSTUS	transcript	1804869	1808562	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	stop_codon	1804866	1804868	.	-	0	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1804869	1804880	0.59	-	0	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1804869	1804880	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	intron	1804881	1805493	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1805494	1805503	0.56	-	1	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1805494	1805503	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	intron	1805504	1805786	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1805787	1805841	0.56	-	2	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1805787	1805841	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	intron	1805842	1805944	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1805945	1806025	0.97	-	2	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1805945	1806025	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	intron	1806026	1806147	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1806148	1806208	1	-	0	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1806148	1806208	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	intron	1806209	1806343	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1806344	1806404	1	-	1	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1806344	1806404	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	intron	1806405	1806611	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1806612	1806682	1	-	0	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1806612	1806682	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	intron	1806683	1806938	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1806939	1807001	1	-	0	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1806939	1807001	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	intron	1807002	1807202	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1807203	1807279	1	-	2	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1807203	1807279	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	intron	1807280	1807388	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1807389	1807472	1	-	2	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1807389	1807472	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	intron	1807473	1807641	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1807642	1807686	1	-	2	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1807642	1807686	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	intron	1807687	1807961	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1807962	1808022	1	-	0	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1807962	1808022	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	intron	1808023	1808229	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	CDS	1808230	1808562	0.78	-	0	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	exon	1808230	1808562	.	-	.	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
Ledus.S1	AUGUSTUS	start_codon	1808560	1808562	.	-	0	transcript_id "Ledus.S1G011000.t1"; gene_id "Ledus.S1G011000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12888.t1 is derived from g4461.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	374264	374849	.	-	.	Ledus.C10G003100
Ledus.C10	AUGUSTUS	transcript	374264	374849	.	-	.	transcript_id "Ledus.C10G003100.t1"; gene_id "Ledus.C10G003100"
Ledus.C10	AUGUSTUS	stop_codon	374261	374263	.	-	0	transcript_id "Ledus.C10G003100.t1"; gene_id "Ledus.C10G003100"
Ledus.C10	AUGUSTUS	CDS	374264	374318	0.28	-	1	transcript_id "Ledus.C10G003100.t1"; gene_id "Ledus.C10G003100"
Ledus.C10	AUGUSTUS	exon	374264	374318	.	-	.	transcript_id "Ledus.C10G003100.t1"; gene_id "Ledus.C10G003100"
Ledus.C10	AUGUSTUS	intron	374319	374592	.	-	.	transcript_id "Ledus.C10G003100.t1"; gene_id "Ledus.C10G003100"
Ledus.C10	AUGUSTUS	CDS	374593	374849	0.36	-	0	transcript_id "Ledus.C10G003100.t1"; gene_id "Ledus.C10G003100"
Ledus.C10	AUGUSTUS	exon	374593	374849	.	-	.	transcript_id "Ledus.C10G003100.t1"; gene_id "Ledus.C10G003100"
Ledus.C10	AUGUSTUS	start_codon	374847	374849	.	-	0	transcript_id "Ledus.C10G003100.t1"; gene_id "Ledus.C10G003100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7345.t1 is derived from g12016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1312077	1314368	.	+	.	Ledus.S5G012300
Ledus.S5	AUGUSTUS	transcript	1312077	1314368	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	start_codon	1312077	1312079	.	+	0	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	CDS	1312077	1312153	0.78	+	0	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	exon	1312077	1312153	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	intron	1312154	1312246	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	CDS	1312247	1312417	1	+	1	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	exon	1312247	1312417	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	intron	1312418	1313039	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	CDS	1313040	1313121	1	+	1	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	exon	1313040	1313121	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	intron	1313122	1313310	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	CDS	1313311	1313385	1	+	0	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	exon	1313311	1313385	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	intron	1313386	1313565	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	CDS	1313566	1313726	1	+	0	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	exon	1313566	1313726	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	intron	1313727	1313867	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	CDS	1313868	1313963	1	+	1	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	exon	1313868	1313963	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	intron	1313964	1314072	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	CDS	1314073	1314151	1	+	1	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	exon	1314073	1314151	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	intron	1314152	1314236	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	CDS	1314237	1314368	1	+	0	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	exon	1314237	1314368	.	+	.	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
Ledus.S5	AUGUSTUS	stop_codon	1314369	1314371	.	+	0	transcript_id "Ledus.S5G012300.t1"; gene_id "Ledus.S5G012300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11447.t1 is derived from g5065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4371837	4373173	.	-	.	Ledus.S4G060300
Ledus.S4	AUGUSTUS	transcript	4371837	4373173	.	-	.	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	stop_codon	4371834	4371836	.	-	0	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	CDS	4371837	4372036	0.65	-	2	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	exon	4371837	4372036	.	-	.	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	intron	4372037	4372122	.	-	.	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	CDS	4372123	4372413	0.28	-	2	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	exon	4372123	4372413	.	-	.	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	intron	4372414	4372490	.	-	.	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	CDS	4372491	4372721	0.46	-	2	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	exon	4372491	4372721	.	-	.	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	intron	4372722	4373049	.	-	.	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	CDS	4373050	4373173	1	-	0	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	exon	4373050	4373173	.	-	.	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
Ledus.S4	AUGUSTUS	start_codon	4373171	4373173	.	-	0	transcript_id "Ledus.S4G060300.t1"; gene_id "Ledus.S4G060300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10430.t1 is derived from g11460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15086040	15086569	.	-	.	Ledus.S3G190700
Ledus.S3	AUGUSTUS	transcript	15086040	15086569	.	-	.	transcript_id "Ledus.S3G190700.t1"; gene_id "Ledus.S3G190700"
Ledus.S3	AUGUSTUS	stop_codon	15086037	15086039	.	-	0	transcript_id "Ledus.S3G190700.t1"; gene_id "Ledus.S3G190700"
Ledus.S3	AUGUSTUS	CDS	15086040	15086144	1	-	0	transcript_id "Ledus.S3G190700.t1"; gene_id "Ledus.S3G190700"
Ledus.S3	AUGUSTUS	exon	15086040	15086144	.	-	.	transcript_id "Ledus.S3G190700.t1"; gene_id "Ledus.S3G190700"
Ledus.S3	AUGUSTUS	intron	15086145	15086227	.	-	.	transcript_id "Ledus.S3G190700.t1"; gene_id "Ledus.S3G190700"
Ledus.S3	AUGUSTUS	CDS	15086228	15086390	1	-	1	transcript_id "Ledus.S3G190700.t1"; gene_id "Ledus.S3G190700"
Ledus.S3	AUGUSTUS	exon	15086228	15086390	.	-	.	transcript_id "Ledus.S3G190700.t1"; gene_id "Ledus.S3G190700"
Ledus.S3	AUGUSTUS	intron	15086391	15086465	.	-	.	transcript_id "Ledus.S3G190700.t1"; gene_id "Ledus.S3G190700"
Ledus.S3	AUGUSTUS	CDS	15086466	15086569	0.9	-	0	transcript_id "Ledus.S3G190700.t1"; gene_id "Ledus.S3G190700"
Ledus.S3	AUGUSTUS	exon	15086466	15086569	.	-	.	transcript_id "Ledus.S3G190700.t1"; gene_id "Ledus.S3G190700"
Ledus.S3	AUGUSTUS	start_codon	15086567	15086569	.	-	0	transcript_id "Ledus.S3G190700.t1"; gene_id "Ledus.S3G190700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9955.t1 is derived from g10985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11456383	11459407	.	-	.	Ledus.S3G143200
Ledus.S3	AUGUSTUS	transcript	11456383	11459407	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	stop_codon	11456380	11456382	.	-	0	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11456383	11456448	0.93	-	0	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11456383	11456448	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11456449	11456601	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11456602	11456733	1	-	0	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11456602	11456733	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11456734	11456826	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11456827	11456923	1	-	1	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11456827	11456923	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11456924	11457014	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11457015	11457079	1	-	0	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11457015	11457079	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11457080	11457217	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11457218	11457277	1	-	0	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11457218	11457277	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11457278	11457383	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11457384	11457454	1	-	2	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11457384	11457454	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11457455	11457577	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11457578	11457637	1	-	2	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11457578	11457637	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11457638	11457733	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11457734	11457833	1	-	0	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11457734	11457833	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11457834	11457993	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11457994	11458072	1	-	1	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11457994	11458072	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11458073	11458163	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11458164	11458238	1	-	1	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11458164	11458238	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11458239	11458460	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11458461	11458585	1	-	0	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11458461	11458585	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11458586	11458763	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11458764	11458822	1	-	2	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11458764	11458822	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11458823	11458950	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11458951	11459029	1	-	0	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11458951	11459029	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	intron	11459030	11459194	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	CDS	11459195	11459407	0.98	-	0	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	exon	11459195	11459407	.	-	.	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
Ledus.S3	AUGUSTUS	start_codon	11459405	11459407	.	-	0	transcript_id "Ledus.S3G143200.t1"; gene_id "Ledus.S3G143200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8020.t1 is derived from g12691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8545721	8546166	.	-	.	Ledus.S5G079800
Ledus.S5	AUGUSTUS	transcript	8545721	8546166	.	-	.	transcript_id "Ledus.S5G079800.t1"; gene_id "Ledus.S5G079800"
Ledus.S5	AUGUSTUS	stop_codon	8545718	8545720	.	-	0	transcript_id "Ledus.S5G079800.t1"; gene_id "Ledus.S5G079800"
Ledus.S5	AUGUSTUS	CDS	8545721	8545767	0.71	-	2	transcript_id "Ledus.S5G079800.t1"; gene_id "Ledus.S5G079800"
Ledus.S5	AUGUSTUS	exon	8545721	8545767	.	-	.	transcript_id "Ledus.S5G079800.t1"; gene_id "Ledus.S5G079800"
Ledus.S5	AUGUSTUS	intron	8545768	8545862	.	-	.	transcript_id "Ledus.S5G079800.t1"; gene_id "Ledus.S5G079800"
Ledus.S5	AUGUSTUS	CDS	8545863	8546166	0.71	-	0	transcript_id "Ledus.S5G079800.t1"; gene_id "Ledus.S5G079800"
Ledus.S5	AUGUSTUS	exon	8545863	8546166	.	-	.	transcript_id "Ledus.S5G079800.t1"; gene_id "Ledus.S5G079800"
Ledus.S5	AUGUSTUS	start_codon	8546164	8546166	.	-	0	transcript_id "Ledus.S5G079800.t1"; gene_id "Ledus.S5G079800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3033.t1 is derived from g468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5396339	5401411	.	-	.	Ledus.S1G045400
Ledus.S1	AUGUSTUS	transcript	5396339	5401411	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	stop_codon	5396336	5396338	.	-	0	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5396339	5396645	1	-	1	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5396339	5396645	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5396646	5396733	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5396734	5397076	0.88	-	2	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5396734	5397076	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5397077	5397203	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5397204	5398176	0.45	-	0	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5397204	5398176	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5398177	5398258	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5398259	5398427	1	-	1	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5398259	5398427	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5398428	5398526	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5398527	5398720	1	-	0	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5398527	5398720	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5398721	5398875	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5398876	5399017	0.88	-	1	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5398876	5399017	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5399018	5399171	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5399172	5399223	1	-	2	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5399172	5399223	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5399224	5399342	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5399343	5399470	0.69	-	1	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5399343	5399470	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5399471	5399565	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5399566	5399699	0.94	-	0	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5399566	5399699	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5399700	5399877	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5399878	5400002	0.75	-	2	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5399878	5400002	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5400003	5400237	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5400238	5400326	0.25	-	1	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5400238	5400326	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5400327	5400427	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5400428	5400487	0.76	-	1	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5400428	5400487	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5400488	5400575	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5400576	5400659	1	-	1	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5400576	5400659	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5400660	5400738	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5400739	5400831	1	-	1	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5400739	5400831	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5400832	5400943	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5400944	5400993	0.82	-	0	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5400944	5400993	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	intron	5400994	5401108	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	CDS	5401109	5401411	0.38	-	0	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	exon	5401109	5401411	.	-	.	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
Ledus.S1	AUGUSTUS	start_codon	5401409	5401411	.	-	0	transcript_id "Ledus.S1G045400.t1"; gene_id "Ledus.S1G045400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10455.t1 is derived from g11485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15259560	15261639	.	-	.	Ledus.S3G193200
Ledus.S3	AUGUSTUS	transcript	15259560	15261639	.	-	.	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	stop_codon	15259557	15259559	.	-	0	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	CDS	15259560	15260297	0.97	-	0	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	exon	15259560	15260297	.	-	.	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	intron	15260298	15260390	.	-	.	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	CDS	15260391	15260675	1	-	0	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	exon	15260391	15260675	.	-	.	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	intron	15260676	15260795	.	-	.	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	CDS	15260796	15261297	1	-	1	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	exon	15260796	15261297	.	-	.	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	intron	15261298	15261388	.	-	.	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	CDS	15261389	15261639	1	-	0	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	exon	15261389	15261639	.	-	.	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
Ledus.S3	AUGUSTUS	start_codon	15261637	15261639	.	-	0	transcript_id "Ledus.S3G193200.t1"; gene_id "Ledus.S3G193200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7228.t1 is derived from g11899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	167614	169030	.	+	.	Ledus.S5G000600
Ledus.S5	AUGUSTUS	transcript	167614	169030	.	+	.	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	start_codon	167614	167616	.	+	0	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	CDS	167614	168300	0.72	+	0	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	exon	167614	168300	.	+	.	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	intron	168301	168417	.	+	.	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	CDS	168418	168552	1	+	0	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	exon	168418	168552	.	+	.	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	intron	168553	168626	.	+	.	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	CDS	168627	168724	1	+	0	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	exon	168627	168724	.	+	.	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	intron	168725	168813	.	+	.	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	CDS	168814	169030	0.54	+	1	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	exon	168814	169030	.	+	.	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
Ledus.S5	AUGUSTUS	stop_codon	169031	169033	.	+	0	transcript_id "Ledus.S5G000600.t1"; gene_id "Ledus.S5G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8878.t1 is derived from g9908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2779348	2780817	.	+	.	Ledus.S3G035500
Ledus.S3	AUGUSTUS	transcript	2779348	2780817	.	+	.	transcript_id "Ledus.S3G035500.t1"; gene_id "Ledus.S3G035500"
Ledus.S3	AUGUSTUS	start_codon	2779348	2779350	.	+	0	transcript_id "Ledus.S3G035500.t1"; gene_id "Ledus.S3G035500"
Ledus.S3	AUGUSTUS	CDS	2779348	2780817	0.83	+	0	transcript_id "Ledus.S3G035500.t1"; gene_id "Ledus.S3G035500"
Ledus.S3	AUGUSTUS	exon	2779348	2780817	.	+	.	transcript_id "Ledus.S3G035500.t1"; gene_id "Ledus.S3G035500"
Ledus.S3	AUGUSTUS	stop_codon	2780818	2780820	.	+	0	transcript_id "Ledus.S3G035500.t1"; gene_id "Ledus.S3G035500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11506.t1 is derived from g5124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4960493	4961340	.	-	.	Ledus.S4G066200
Ledus.S4	AUGUSTUS	transcript	4960493	4961340	.	-	.	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	stop_codon	4960490	4960492	.	-	0	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	CDS	4960493	4960609	1	-	0	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	exon	4960493	4960609	.	-	.	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	intron	4960610	4960702	.	-	.	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	CDS	4960703	4960776	1	-	2	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	exon	4960703	4960776	.	-	.	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	intron	4960777	4960963	.	-	.	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	CDS	4960964	4960992	1	-	1	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	exon	4960964	4960992	.	-	.	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	intron	4960993	4961155	.	-	.	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	CDS	4961156	4961340	0.89	-	0	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	exon	4961156	4961340	.	-	.	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
Ledus.S4	AUGUSTUS	start_codon	4961338	4961340	.	-	0	transcript_id "Ledus.S4G066200.t1"; gene_id "Ledus.S4G066200"
# This transcript jg6446.t2 is derived from g3889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6447.t1 is derived from g3890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31279459	31282021	.	+	.	Ledus.S1G386800
Ledus.S1	AUGUSTUS	transcript	31279459	31282021	.	+	.	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	start_codon	31279459	31279461	.	+	0	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	CDS	31279459	31281045	0.82	+	0	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	exon	31279459	31281045	.	+	.	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	intron	31281046	31281315	.	+	.	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	CDS	31281316	31281332	0.92	+	0	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	exon	31281316	31281332	.	+	.	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	intron	31281333	31281522	.	+	.	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	CDS	31281523	31281624	0.97	+	1	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	exon	31281523	31281624	.	+	.	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	intron	31281625	31281870	.	+	.	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	CDS	31281871	31282021	0.97	+	1	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	exon	31281871	31282021	.	+	.	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
Ledus.S1	AUGUSTUS	stop_codon	31282022	31282024	.	+	0	transcript_id "Ledus.S1G386800.t1"; gene_id "Ledus.S1G386800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5155.t1 is derived from g2594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22000203	22002698	.	+	.	Ledus.S1G257600
Ledus.S1	AUGUSTUS	transcript	22000203	22002698	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	start_codon	22000203	22000205	.	+	0	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	CDS	22000203	22000303	0.97	+	0	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	exon	22000203	22000303	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	intron	22000304	22000715	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	CDS	22000716	22000813	1	+	1	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	exon	22000716	22000813	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	intron	22000814	22001096	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	CDS	22001097	22001130	1	+	2	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	exon	22001097	22001130	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	intron	22001131	22001312	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	CDS	22001313	22001487	1	+	1	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	exon	22001313	22001487	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	intron	22001488	22001593	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	CDS	22001594	22001659	1	+	0	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	exon	22001594	22001659	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	intron	22001660	22001832	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	CDS	22001833	22001881	1	+	0	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	exon	22001833	22001881	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	intron	22001882	22001957	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	CDS	22001958	22002040	1	+	2	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	exon	22001958	22002040	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	intron	22002041	22002134	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	CDS	22002135	22002214	1	+	0	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	exon	22002135	22002214	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	intron	22002215	22002301	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	CDS	22002302	22002404	0.86	+	1	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	exon	22002302	22002404	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	intron	22002405	22002513	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	CDS	22002514	22002572	1	+	0	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	exon	22002514	22002572	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	intron	22002573	22002685	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	CDS	22002686	22002698	1	+	1	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	exon	22002686	22002698	.	+	.	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
Ledus.S1	AUGUSTUS	stop_codon	22002699	22002701	.	+	0	transcript_id "Ledus.S1G257600.t1"; gene_id "Ledus.S1G257600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4224.t1 is derived from g1660.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15642698	15646950	.	+	.	Ledus.S1G164500
Ledus.S1	AUGUSTUS	transcript	15642698	15646950	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	start_codon	15642698	15642700	.	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15642698	15642885	0.77	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15642698	15642885	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15642886	15643044	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15643045	15643116	1	+	1	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15643045	15643116	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15643117	15643231	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15643232	15643307	1	+	1	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15643232	15643307	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15643308	15643381	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15643382	15643480	1	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15643382	15643480	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15643481	15643621	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15643622	15643776	1	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15643622	15643776	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15643777	15643865	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15643866	15643970	1	+	1	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15643866	15643970	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15643971	15644061	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15644062	15644148	0.98	+	1	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15644062	15644148	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15644149	15644260	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15644261	15644345	0.9	+	1	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15644261	15644345	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15644346	15644441	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15644442	15644589	1	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15644442	15644589	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15644590	15644695	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15644696	15644775	1	+	2	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15644696	15644775	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15644776	15644859	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15644860	15644940	0.89	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15644860	15644940	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15644941	15645068	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15645069	15645263	0.99	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15645069	15645263	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15645264	15645347	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15645348	15645461	1	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15645348	15645461	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15645462	15645530	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15645531	15645623	0.99	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15645531	15645623	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15645624	15645740	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15645741	15645903	1	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15645741	15645903	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15645904	15646015	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15646016	15646092	0.92	+	2	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15646016	15646092	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15646093	15646189	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15646190	15646237	0.9	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15646190	15646237	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15646238	15646330	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15646331	15646400	0.98	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15646331	15646400	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15646401	15646511	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15646512	15646585	0.99	+	2	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15646512	15646585	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15646586	15646658	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15646659	15646769	0.44	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15646659	15646769	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15646770	15646872	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15646873	15646950	0.4	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15646873	15646950	.	+	.	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	stop_codon	15646951	15646953	.	+	0	transcript_id "Ledus.S1G164500.t1"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	transcript	15642698	15646371	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	start_codon	15642698	15642700	.	+	0	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15642698	15642885	0.53	+	0	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15642698	15642885	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15642886	15643044	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15643045	15643116	1	+	1	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15643045	15643116	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15643117	15643231	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15643232	15643307	1	+	1	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15643232	15643307	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15643308	15643381	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15643382	15643480	1	+	0	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15643382	15643480	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15643481	15643621	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15643622	15643776	1	+	0	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15643622	15643776	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15643777	15643865	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15643866	15643970	1	+	1	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15643866	15643970	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15643971	15644061	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15644062	15644148	0.94	+	1	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15644062	15644148	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15644149	15644260	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15644261	15644345	0.88	+	1	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15644261	15644345	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15644346	15644441	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15644442	15644589	1	+	0	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15644442	15644589	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15644590	15644695	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15644696	15644775	1	+	2	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15644696	15644775	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15644776	15644859	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15644860	15644940	0.91	+	0	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15644860	15644940	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15644941	15645068	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15645069	15645263	0.98	+	0	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15645069	15645263	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15645264	15645347	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15645348	15645461	1	+	0	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15645348	15645461	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15645462	15645530	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15645531	15645623	1	+	0	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15645531	15645623	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15645624	15645740	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15645741	15645903	1	+	0	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15645741	15645903	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15645904	15646015	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15646016	15646092	0.9	+	2	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15646016	15646092	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	intron	15646093	15646284	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	CDS	15646285	15646371	0.35	+	0	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	exon	15646285	15646371	.	+	.	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
Ledus.S1	AUGUSTUS	stop_codon	15646372	15646374	.	+	0	transcript_id "Ledus.S1G164500.t2"; gene_id "Ledus.S1G164500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4868.t1 is derived from g2306.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20443313	20444296	.	+	.	Ledus.S1G228900
Ledus.S1	AUGUSTUS	transcript	20443313	20444296	.	+	.	transcript_id "Ledus.S1G228900.t1"; gene_id "Ledus.S1G228900"
Ledus.S1	AUGUSTUS	start_codon	20443313	20443315	.	+	0	transcript_id "Ledus.S1G228900.t1"; gene_id "Ledus.S1G228900"
Ledus.S1	AUGUSTUS	CDS	20443313	20444296	0.98	+	0	transcript_id "Ledus.S1G228900.t1"; gene_id "Ledus.S1G228900"
Ledus.S1	AUGUSTUS	exon	20443313	20444296	.	+	.	transcript_id "Ledus.S1G228900.t1"; gene_id "Ledus.S1G228900"
Ledus.S1	AUGUSTUS	stop_codon	20444297	20444299	.	+	0	transcript_id "Ledus.S1G228900.t1"; gene_id "Ledus.S1G228900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8500.t1 is derived from g13172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12295554	12297387	.	-	.	Ledus.S5G127800
Ledus.S5	AUGUSTUS	transcript	12295554	12297387	.	-	.	transcript_id "Ledus.S5G127800.t1"; gene_id "Ledus.S5G127800"
Ledus.S5	AUGUSTUS	stop_codon	12295551	12295553	.	-	0	transcript_id "Ledus.S5G127800.t1"; gene_id "Ledus.S5G127800"
Ledus.S5	AUGUSTUS	CDS	12295554	12297160	0.6	-	2	transcript_id "Ledus.S5G127800.t1"; gene_id "Ledus.S5G127800"
Ledus.S5	AUGUSTUS	exon	12295554	12297160	.	-	.	transcript_id "Ledus.S5G127800.t1"; gene_id "Ledus.S5G127800"
Ledus.S5	AUGUSTUS	intron	12297161	12297239	.	-	.	transcript_id "Ledus.S5G127800.t1"; gene_id "Ledus.S5G127800"
Ledus.S5	AUGUSTUS	CDS	12297240	12297387	0.99	-	0	transcript_id "Ledus.S5G127800.t1"; gene_id "Ledus.S5G127800"
Ledus.S5	AUGUSTUS	exon	12297240	12297387	.	-	.	transcript_id "Ledus.S5G127800.t1"; gene_id "Ledus.S5G127800"
Ledus.S5	AUGUSTUS	start_codon	12297385	12297387	.	-	0	transcript_id "Ledus.S5G127800.t1"; gene_id "Ledus.S5G127800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4997.t1 is derived from g2435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21077145	21078203	.	+	.	Ledus.S1G241800
Ledus.S1	AUGUSTUS	transcript	21077145	21078203	.	+	.	transcript_id "Ledus.S1G241800.t1"; gene_id "Ledus.S1G241800"
Ledus.S1	AUGUSTUS	start_codon	21077145	21077147	.	+	0	transcript_id "Ledus.S1G241800.t1"; gene_id "Ledus.S1G241800"
Ledus.S1	AUGUSTUS	CDS	21077145	21078203	0.97	+	0	transcript_id "Ledus.S1G241800.t1"; gene_id "Ledus.S1G241800"
Ledus.S1	AUGUSTUS	exon	21077145	21078203	.	+	.	transcript_id "Ledus.S1G241800.t1"; gene_id "Ledus.S1G241800"
Ledus.S1	AUGUSTUS	stop_codon	21078204	21078206	.	+	0	transcript_id "Ledus.S1G241800.t1"; gene_id "Ledus.S1G241800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg224.t1 is derived from g7085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	976854	979326	.	+	.	Ledus.S2G010600
Ledus.S2	AUGUSTUS	transcript	976854	979326	.	+	.	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	start_codon	976854	976856	.	+	0	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	CDS	976854	977128	0.81	+	0	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	exon	976854	977128	.	+	.	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	intron	977129	977254	.	+	.	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	CDS	977255	977356	1	+	1	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	exon	977255	977356	.	+	.	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	intron	977357	977468	.	+	.	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	CDS	977469	978280	1	+	1	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	exon	977469	978280	.	+	.	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	intron	978281	978364	.	+	.	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	CDS	978365	978856	0.96	+	2	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	exon	978365	978856	.	+	.	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	intron	978857	978974	.	+	.	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	CDS	978975	979061	0.96	+	2	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	exon	978975	979061	.	+	.	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	intron	979062	979147	.	+	.	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	CDS	979148	979326	0.62	+	2	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	exon	979148	979326	.	+	.	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
Ledus.S2	AUGUSTUS	stop_codon	979327	979329	.	+	0	transcript_id "Ledus.S2G010600.t1"; gene_id "Ledus.S2G010600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2100.t1 is derived from g8963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14718495	14719550	.	-	.	Ledus.S2G198200
Ledus.S2	AUGUSTUS	transcript	14718495	14719550	.	-	.	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	stop_codon	14718492	14718494	.	-	0	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	CDS	14718495	14718544	0.69	-	2	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	exon	14718495	14718544	.	-	.	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	intron	14718545	14718648	.	-	.	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	CDS	14718649	14718724	0.92	-	0	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	exon	14718649	14718724	.	-	.	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	intron	14718725	14718814	.	-	.	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	CDS	14718815	14718897	1	-	2	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	exon	14718815	14718897	.	-	.	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	intron	14718898	14718990	.	-	.	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	CDS	14718991	14719145	1	-	1	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	exon	14718991	14719145	.	-	.	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	intron	14719146	14719347	.	-	.	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	CDS	14719348	14719550	0.68	-	0	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	exon	14719348	14719550	.	-	.	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
Ledus.S2	AUGUSTUS	start_codon	14719548	14719550	.	-	0	transcript_id "Ledus.S2G198200.t1"; gene_id "Ledus.S2G198200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6476.t1 is derived from g3919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31478381	31482527	.	+	.	Ledus.S1G389700
Ledus.S1	AUGUSTUS	transcript	31478381	31482527	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	start_codon	31478381	31478383	.	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31478381	31478752	1	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31478381	31478752	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31478753	31478874	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31478875	31478973	1	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31478875	31478973	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31478974	31479161	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31479162	31479228	1	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31479162	31479228	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31479229	31479320	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31479321	31479853	0.54	+	2	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31479321	31479853	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31479854	31479984	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31479985	31480068	1	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31479985	31480068	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31480069	31480170	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31480171	31480218	0.99	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31480171	31480218	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31480219	31480352	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31480353	31480417	1	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31480353	31480417	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31480418	31480626	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31480627	31480675	0.99	+	1	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31480627	31480675	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31480676	31480780	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31480781	31481024	0.92	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31480781	31481024	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31481025	31481150	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31481151	31481272	1	+	2	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31481151	31481272	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31481273	31481398	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31481399	31481479	0.82	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31481399	31481479	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31481480	31481587	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31481588	31481662	1	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31481588	31481662	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31481663	31481749	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31481750	31481997	1	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31481750	31481997	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31481998	31482091	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31482092	31482242	1	+	1	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31482092	31482242	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	intron	31482243	31482332	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	CDS	31482333	31482527	1	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	exon	31482333	31482527	.	+	.	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
Ledus.S1	AUGUSTUS	stop_codon	31482528	31482530	.	+	0	transcript_id "Ledus.S1G389700.t1"; gene_id "Ledus.S1G389700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4772.t1 is derived from g2210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19681238	19683657	.	+	.	Ledus.S1G219300
Ledus.S1	AUGUSTUS	transcript	19681238	19683657	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	start_codon	19681238	19681240	.	+	0	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	CDS	19681238	19681376	1	+	0	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	exon	19681238	19681376	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	intron	19681377	19681480	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	CDS	19681481	19681668	1	+	2	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	exon	19681481	19681668	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	intron	19681669	19681752	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	CDS	19681753	19681893	1	+	0	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	exon	19681753	19681893	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	intron	19681894	19682050	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	CDS	19682051	19682161	1	+	0	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	exon	19682051	19682161	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	intron	19682162	19682423	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	CDS	19682424	19682503	1	+	0	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	exon	19682424	19682503	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	intron	19682504	19682673	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	CDS	19682674	19682793	1	+	1	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	exon	19682674	19682793	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	intron	19682794	19682874	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	CDS	19682875	19682997	1	+	1	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	exon	19682875	19682997	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	intron	19682998	19683107	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	CDS	19683108	19683174	1	+	1	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	exon	19683108	19683174	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	intron	19683175	19683400	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	CDS	19683401	19683477	1	+	0	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	exon	19683401	19683477	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	intron	19683478	19683638	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	CDS	19683639	19683657	1	+	1	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	exon	19683639	19683657	.	+	.	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
Ledus.S1	AUGUSTUS	stop_codon	19683658	19683660	.	+	0	transcript_id "Ledus.S1G219300.t1"; gene_id "Ledus.S1G219300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12587.t1 is derived from g6209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13009024	13009661	.	+	.	Ledus.S4G174300
Ledus.S4	AUGUSTUS	transcript	13009024	13009661	.	+	.	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	start_codon	13009024	13009026	.	+	0	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	CDS	13009024	13009059	1	+	0	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	exon	13009024	13009059	.	+	.	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	intron	13009060	13009216	.	+	.	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	CDS	13009217	13009275	1	+	0	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	exon	13009217	13009275	.	+	.	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	intron	13009276	13009441	.	+	.	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	CDS	13009442	13009536	1	+	1	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	exon	13009442	13009536	.	+	.	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	intron	13009537	13009635	.	+	.	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	CDS	13009636	13009661	1	+	2	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	exon	13009636	13009661	.	+	.	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
Ledus.S4	AUGUSTUS	stop_codon	13009662	13009664	.	+	0	transcript_id "Ledus.S4G174300.t1"; gene_id "Ledus.S4G174300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2254.t1 is derived from g9117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16583569	16584139	.	-	.	Ledus.S2G213600
Ledus.S2	AUGUSTUS	transcript	16583569	16584139	.	-	.	transcript_id "Ledus.S2G213600.t1"; gene_id "Ledus.S2G213600"
Ledus.S2	AUGUSTUS	stop_codon	16583566	16583568	.	-	0	transcript_id "Ledus.S2G213600.t1"; gene_id "Ledus.S2G213600"
Ledus.S2	AUGUSTUS	CDS	16583569	16583911	0.2	-	1	transcript_id "Ledus.S2G213600.t1"; gene_id "Ledus.S2G213600"
Ledus.S2	AUGUSTUS	exon	16583569	16583911	.	-	.	transcript_id "Ledus.S2G213600.t1"; gene_id "Ledus.S2G213600"
Ledus.S2	AUGUSTUS	intron	16583912	16583987	.	-	.	transcript_id "Ledus.S2G213600.t1"; gene_id "Ledus.S2G213600"
Ledus.S2	AUGUSTUS	CDS	16583988	16584139	0.32	-	0	transcript_id "Ledus.S2G213600.t1"; gene_id "Ledus.S2G213600"
Ledus.S2	AUGUSTUS	exon	16583988	16584139	.	-	.	transcript_id "Ledus.S2G213600.t1"; gene_id "Ledus.S2G213600"
Ledus.S2	AUGUSTUS	start_codon	16584137	16584139	.	-	0	transcript_id "Ledus.S2G213600.t1"; gene_id "Ledus.S2G213600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg761.t1 is derived from g7622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4856937	4858805	.	+	.	Ledus.S2G064300
Ledus.S2	AUGUSTUS	transcript	4856937	4858805	.	+	.	transcript_id "Ledus.S2G064300.t1"; gene_id "Ledus.S2G064300"
Ledus.S2	AUGUSTUS	start_codon	4856937	4856939	.	+	0	transcript_id "Ledus.S2G064300.t1"; gene_id "Ledus.S2G064300"
Ledus.S2	AUGUSTUS	CDS	4856937	4857038	0.45	+	0	transcript_id "Ledus.S2G064300.t1"; gene_id "Ledus.S2G064300"
Ledus.S2	AUGUSTUS	exon	4856937	4857038	.	+	.	transcript_id "Ledus.S2G064300.t1"; gene_id "Ledus.S2G064300"
Ledus.S2	AUGUSTUS	intron	4857039	4857113	.	+	.	transcript_id "Ledus.S2G064300.t1"; gene_id "Ledus.S2G064300"
Ledus.S2	AUGUSTUS	CDS	4857114	4857510	0.99	+	0	transcript_id "Ledus.S2G064300.t1"; gene_id "Ledus.S2G064300"
Ledus.S2	AUGUSTUS	exon	4857114	4857510	.	+	.	transcript_id "Ledus.S2G064300.t1"; gene_id "Ledus.S2G064300"
Ledus.S2	AUGUSTUS	intron	4857511	4857606	.	+	.	transcript_id "Ledus.S2G064300.t1"; gene_id "Ledus.S2G064300"
Ledus.S2	AUGUSTUS	CDS	4857607	4858805	0.99	+	2	transcript_id "Ledus.S2G064300.t1"; gene_id "Ledus.S2G064300"
Ledus.S2	AUGUSTUS	exon	4857607	4858805	.	+	.	transcript_id "Ledus.S2G064300.t1"; gene_id "Ledus.S2G064300"
Ledus.S2	AUGUSTUS	stop_codon	4858806	4858808	.	+	0	transcript_id "Ledus.S2G064300.t1"; gene_id "Ledus.S2G064300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10980.t1 is derived from g4598.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	988381	989149	.	+	.	Ledus.S4G013600
Ledus.S4	AUGUSTUS	transcript	988381	989149	.	+	.	transcript_id "Ledus.S4G013600.t1"; gene_id "Ledus.S4G013600"
Ledus.S4	AUGUSTUS	start_codon	988381	988383	.	+	0	transcript_id "Ledus.S4G013600.t1"; gene_id "Ledus.S4G013600"
Ledus.S4	AUGUSTUS	CDS	988381	988595	0.95	+	0	transcript_id "Ledus.S4G013600.t1"; gene_id "Ledus.S4G013600"
Ledus.S4	AUGUSTUS	exon	988381	988595	.	+	.	transcript_id "Ledus.S4G013600.t1"; gene_id "Ledus.S4G013600"
Ledus.S4	AUGUSTUS	intron	988596	988677	.	+	.	transcript_id "Ledus.S4G013600.t1"; gene_id "Ledus.S4G013600"
Ledus.S4	AUGUSTUS	CDS	988678	988749	1	+	1	transcript_id "Ledus.S4G013600.t1"; gene_id "Ledus.S4G013600"
Ledus.S4	AUGUSTUS	exon	988678	988749	.	+	.	transcript_id "Ledus.S4G013600.t1"; gene_id "Ledus.S4G013600"
Ledus.S4	AUGUSTUS	intron	988750	989007	.	+	.	transcript_id "Ledus.S4G013600.t1"; gene_id "Ledus.S4G013600"
Ledus.S4	AUGUSTUS	CDS	989008	989149	0.97	+	1	transcript_id "Ledus.S4G013600.t1"; gene_id "Ledus.S4G013600"
Ledus.S4	AUGUSTUS	exon	989008	989149	.	+	.	transcript_id "Ledus.S4G013600.t1"; gene_id "Ledus.S4G013600"
Ledus.S4	AUGUSTUS	stop_codon	989150	989152	.	+	0	transcript_id "Ledus.S4G013600.t1"; gene_id "Ledus.S4G013600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1442.t1 is derived from g8303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10152164	10153925	.	+	.	Ledus.S2G132400
Ledus.S2	AUGUSTUS	transcript	10152164	10153925	.	+	.	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	start_codon	10152164	10152166	.	+	0	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	CDS	10152164	10152308	0.64	+	0	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	exon	10152164	10152308	.	+	.	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	intron	10152309	10152393	.	+	.	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	CDS	10152394	10152539	1	+	2	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	exon	10152394	10152539	.	+	.	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	intron	10152540	10152635	.	+	.	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	CDS	10152636	10152763	1	+	0	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	exon	10152636	10152763	.	+	.	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	intron	10152764	10152852	.	+	.	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	CDS	10152853	10152956	1	+	1	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	exon	10152853	10152956	.	+	.	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	intron	10152957	10153112	.	+	.	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	CDS	10153113	10153240	1	+	2	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	exon	10153113	10153240	.	+	.	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	intron	10153241	10153379	.	+	.	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	CDS	10153380	10153925	1	+	0	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	exon	10153380	10153925	.	+	.	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
Ledus.S2	AUGUSTUS	stop_codon	10153926	10153928	.	+	0	transcript_id "Ledus.S2G132400.t1"; gene_id "Ledus.S2G132400"
# This transcript jg2210.t1 is derived from g9072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16075047	16075793	.	+	.	Ledus.S2G209100
Ledus.S2	AUGUSTUS	transcript	16075047	16075793	.	+	.	transcript_id "Ledus.S2G209100.t1"; gene_id "Ledus.S2G209100"
Ledus.S2	AUGUSTUS	start_codon	16075047	16075049	.	+	0	transcript_id "Ledus.S2G209100.t1"; gene_id "Ledus.S2G209100"
Ledus.S2	AUGUSTUS	CDS	16075047	16075793	0.9	+	0	transcript_id "Ledus.S2G209100.t1"; gene_id "Ledus.S2G209100"
Ledus.S2	AUGUSTUS	exon	16075047	16075793	.	+	.	transcript_id "Ledus.S2G209100.t1"; gene_id "Ledus.S2G209100"
Ledus.S2	AUGUSTUS	stop_codon	16075794	16075796	.	+	0	transcript_id "Ledus.S2G209100.t1"; gene_id "Ledus.S2G209100"
# This transcript jg8594.t2 is derived from g9624.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8595.t1 is derived from g9625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	494840	496200	.	-	.	Ledus.S3G007200
Ledus.S3	AUGUSTUS	transcript	494840	496200	.	-	.	transcript_id "Ledus.S3G007200.t1"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	stop_codon	494837	494839	.	-	0	transcript_id "Ledus.S3G007200.t1"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	CDS	494840	495748	0.75	-	0	transcript_id "Ledus.S3G007200.t1"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	exon	494840	495748	.	-	.	transcript_id "Ledus.S3G007200.t1"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	intron	495749	495840	.	-	.	transcript_id "Ledus.S3G007200.t1"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	CDS	495841	496058	0.76	-	2	transcript_id "Ledus.S3G007200.t1"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	exon	495841	496058	.	-	.	transcript_id "Ledus.S3G007200.t1"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	intron	496059	496139	.	-	.	transcript_id "Ledus.S3G007200.t1"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	CDS	496140	496200	0.67	-	0	transcript_id "Ledus.S3G007200.t1"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	exon	496140	496200	.	-	.	transcript_id "Ledus.S3G007200.t1"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	start_codon	496198	496200	.	-	0	transcript_id "Ledus.S3G007200.t1"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	transcript	495814	496200	.	-	.	transcript_id "Ledus.S3G007200.t2"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	stop_codon	495811	495813	.	-	0	transcript_id "Ledus.S3G007200.t2"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	CDS	495814	496058	0.74	-	2	transcript_id "Ledus.S3G007200.t2"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	exon	495814	496058	.	-	.	transcript_id "Ledus.S3G007200.t2"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	intron	496059	496139	.	-	.	transcript_id "Ledus.S3G007200.t2"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	CDS	496140	496200	0.74	-	0	transcript_id "Ledus.S3G007200.t2"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	exon	496140	496200	.	-	.	transcript_id "Ledus.S3G007200.t2"; gene_id "Ledus.S3G007200"
Ledus.S3	AUGUSTUS	start_codon	496198	496200	.	-	0	transcript_id "Ledus.S3G007200.t2"; gene_id "Ledus.S3G007200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1889.t1 is derived from g8752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13195744	13196042	.	-	.	Ledus.S2G177100
Ledus.S2	AUGUSTUS	transcript	13195744	13196042	.	-	.	transcript_id "Ledus.S2G177100.t1"; gene_id "Ledus.S2G177100"
Ledus.S2	AUGUSTUS	stop_codon	13195741	13195743	.	-	0	transcript_id "Ledus.S2G177100.t1"; gene_id "Ledus.S2G177100"
Ledus.S2	AUGUSTUS	CDS	13195744	13195930	0.83	-	1	transcript_id "Ledus.S2G177100.t1"; gene_id "Ledus.S2G177100"
Ledus.S2	AUGUSTUS	exon	13195744	13195930	.	-	.	transcript_id "Ledus.S2G177100.t1"; gene_id "Ledus.S2G177100"
Ledus.S2	AUGUSTUS	intron	13195931	13196028	.	-	.	transcript_id "Ledus.S2G177100.t1"; gene_id "Ledus.S2G177100"
Ledus.S2	AUGUSTUS	CDS	13196029	13196042	0.99	-	0	transcript_id "Ledus.S2G177100.t1"; gene_id "Ledus.S2G177100"
Ledus.S2	AUGUSTUS	exon	13196029	13196042	.	-	.	transcript_id "Ledus.S2G177100.t1"; gene_id "Ledus.S2G177100"
Ledus.S2	AUGUSTUS	start_codon	13196040	13196042	.	-	0	transcript_id "Ledus.S2G177100.t1"; gene_id "Ledus.S2G177100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9140.t1 is derived from g10170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4802264	4804739	.	+	.	Ledus.S3G061700
Ledus.S3	AUGUSTUS	transcript	4802264	4804739	.	+	.	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	start_codon	4802264	4802266	.	+	0	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	CDS	4802264	4802611	0.95	+	0	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	exon	4802264	4802611	.	+	.	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	intron	4802612	4802756	.	+	.	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	CDS	4802757	4802922	1	+	0	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	exon	4802757	4802922	.	+	.	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	intron	4802923	4803022	.	+	.	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	CDS	4803023	4803371	0.97	+	2	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	exon	4803023	4803371	.	+	.	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	intron	4803372	4804381	.	+	.	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	CDS	4804382	4804739	0.7	+	1	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	exon	4804382	4804739	.	+	.	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
Ledus.S3	AUGUSTUS	stop_codon	4804740	4804742	.	+	0	transcript_id "Ledus.S3G061700.t1"; gene_id "Ledus.S3G061700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13078.t1 is derived from g6888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5129550	5129810	.	-	.	Ledus.S6G014000
Ledus.S6	AUGUSTUS	transcript	5129550	5129810	.	-	.	transcript_id "Ledus.S6G014000.t1"; gene_id "Ledus.S6G014000"
Ledus.S6	AUGUSTUS	stop_codon	5129547	5129549	.	-	0	transcript_id "Ledus.S6G014000.t1"; gene_id "Ledus.S6G014000"
Ledus.S6	AUGUSTUS	CDS	5129550	5129810	0.93	-	0	transcript_id "Ledus.S6G014000.t1"; gene_id "Ledus.S6G014000"
Ledus.S6	AUGUSTUS	exon	5129550	5129810	.	-	.	transcript_id "Ledus.S6G014000.t1"; gene_id "Ledus.S6G014000"
Ledus.S6	AUGUSTUS	start_codon	5129808	5129810	.	-	0	transcript_id "Ledus.S6G014000.t1"; gene_id "Ledus.S6G014000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg973.t1 is derived from g7834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6391524	6401337	.	+	.	Ledus.S2G085500
Ledus.S2	AUGUSTUS	transcript	6391524	6401337	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	start_codon	6391524	6391526	.	+	0	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6391524	6392042	0.95	+	0	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6391524	6392042	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	intron	6392043	6392200	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6392201	6392298	0.39	+	0	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6392201	6392298	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	intron	6392299	6392666	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6392667	6393291	0.97	+	1	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6392667	6393291	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	intron	6393292	6393535	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6393536	6393625	1	+	0	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6393536	6393625	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	intron	6393626	6393816	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6393817	6393943	1	+	0	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6393817	6393943	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	intron	6393944	6394099	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6394100	6395889	0.75	+	2	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6394100	6395889	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	intron	6395890	6395985	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6395986	6396195	0.93	+	0	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6395986	6396195	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	intron	6396196	6396316	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6396317	6398569	0.99	+	0	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6396317	6398569	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	intron	6398570	6398675	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6398676	6398788	0.95	+	0	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6398676	6398788	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	intron	6398789	6398978	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6398979	6399369	0.97	+	1	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6398979	6399369	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	intron	6399370	6399465	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6399466	6399804	1	+	0	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6399466	6399804	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	intron	6399805	6399895	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6399896	6400036	0.55	+	0	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6399896	6400036	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	intron	6400037	6400269	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	CDS	6400270	6401337	0.96	+	0	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	exon	6400270	6401337	.	+	.	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
Ledus.S2	AUGUSTUS	stop_codon	6401338	6401340	.	+	0	transcript_id "Ledus.S2G085500.t1"; gene_id "Ledus.S2G085500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg585.t1 is derived from g7446.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3464654	3470705	.	-	.	Ledus.S2G046700
Ledus.S2	AUGUSTUS	transcript	3464654	3470705	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	stop_codon	3464651	3464653	.	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3464654	3464713	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3464654	3464713	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3464714	3465000	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465001	3465089	1	-	2	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465001	3465089	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465090	3465201	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465202	3465233	1	-	1	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465202	3465233	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465234	3465326	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465327	3465415	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465327	3465415	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465416	3465563	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465564	3465746	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465564	3465746	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465747	3465864	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465865	3465908	0.97	-	2	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465865	3465908	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465909	3466047	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3466048	3466158	0.97	-	2	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3466048	3466158	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3466159	3466257	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3466258	3466422	1	-	2	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3466258	3466422	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3466423	3466564	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3466565	3466703	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3466565	3466703	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3466704	3466851	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3466852	3466929	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3466852	3466929	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3466930	3467038	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467039	3467107	0.83	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467039	3467107	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3467108	3467227	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467228	3467347	0.96	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467228	3467347	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3467348	3467478	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467479	3467562	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467479	3467562	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3467563	3467773	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467774	3467845	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467774	3467845	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3467846	3467936	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467937	3468004	1	-	2	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467937	3468004	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468005	3468104	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468105	3468159	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468105	3468159	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468160	3468277	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468278	3468370	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468278	3468370	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468371	3468524	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468525	3468602	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468525	3468602	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468603	3468752	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468753	3468833	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468753	3468833	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468834	3468959	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468960	3469079	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468960	3469079	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3469080	3469228	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3469229	3469356	1	-	2	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3469229	3469356	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3469357	3469571	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3469572	3469683	1	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3469572	3469683	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3469684	3469782	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3469783	3469881	0.97	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3469783	3469881	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3469882	3469996	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3469997	3470071	0.97	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3469997	3470071	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3470072	3470213	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3470214	3470705	0.46	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3470214	3470705	.	-	.	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	start_codon	3470703	3470705	.	-	0	transcript_id "Ledus.S2G046700.t1"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	transcript	3464654	3470705	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	stop_codon	3464651	3464653	.	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3464654	3464713	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3464654	3464713	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3464714	3465000	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465001	3465089	0.98	-	2	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465001	3465089	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465090	3465201	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465202	3465233	1	-	1	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465202	3465233	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465234	3465326	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465327	3465415	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465327	3465415	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465416	3465563	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465564	3465746	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465564	3465746	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465747	3465864	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465865	3466010	1	-	2	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465865	3466010	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3466011	3466257	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3466258	3466422	1	-	2	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3466258	3466422	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3466423	3466564	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3466565	3466703	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3466565	3466703	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3466704	3466851	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3466852	3466929	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3466852	3466929	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3466930	3467038	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467039	3467107	0.75	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467039	3467107	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3467108	3467227	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467228	3467347	0.94	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467228	3467347	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3467348	3467478	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467479	3467562	0.99	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467479	3467562	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3467563	3467773	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467774	3467845	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467774	3467845	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3467846	3467936	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467937	3468004	1	-	2	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467937	3468004	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468005	3468104	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468105	3468159	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468105	3468159	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468160	3468277	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468278	3468370	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468278	3468370	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468371	3468524	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468525	3468602	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468525	3468602	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468603	3468752	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468753	3468833	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468753	3468833	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468834	3468959	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468960	3469079	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468960	3469079	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3469080	3469228	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3469229	3469356	1	-	2	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3469229	3469356	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3469357	3469571	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3469572	3469683	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3469572	3469683	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3469684	3469782	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3469783	3469881	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3469783	3469881	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3469882	3469996	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3469997	3470071	1	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3469997	3470071	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3470072	3470213	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3470214	3470705	0.47	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3470214	3470705	.	-	.	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	start_codon	3470703	3470705	.	-	0	transcript_id "Ledus.S2G046700.t2"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	transcript	3464654	3470705	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	stop_codon	3464651	3464653	.	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3464654	3464713	0.99	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3464654	3464713	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3464714	3465000	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465001	3465089	1	-	2	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465001	3465089	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465090	3465201	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465202	3465233	1	-	1	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465202	3465233	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465234	3465326	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465327	3465415	1	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465327	3465415	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465416	3465563	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465564	3465746	1	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465564	3465746	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3465747	3465864	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3465865	3466010	0.97	-	2	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3465865	3466010	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3466011	3466257	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3466258	3466422	1	-	2	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3466258	3466422	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3466423	3466564	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3466565	3466703	1	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3466565	3466703	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3466704	3466851	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3466852	3466929	1	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3466852	3466929	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3466930	3467038	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467039	3467107	0.78	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467039	3467107	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3467108	3467227	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467228	3467347	0.93	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467228	3467347	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3467348	3467478	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467479	3467562	1	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467479	3467562	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3467563	3467773	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467774	3467845	1	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467774	3467845	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3467846	3467936	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3467937	3468004	1	-	2	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3467937	3468004	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468005	3468104	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468105	3468159	1	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468105	3468159	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468160	3468277	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468278	3468370	1	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468278	3468370	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468371	3468524	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468525	3468605	0.86	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468525	3468605	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468606	3468752	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468753	3468833	1	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468753	3468833	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3468834	3468959	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3468960	3469079	0.99	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3468960	3469079	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3469080	3469228	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3469229	3469356	1	-	2	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3469229	3469356	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3469357	3469571	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3469572	3469683	1	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3469572	3469683	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3469684	3469782	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3469783	3469881	0.99	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3469783	3469881	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3469882	3469996	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3469997	3470071	0.99	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3469997	3470071	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	intron	3470072	3470213	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	CDS	3470214	3470705	0.54	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	exon	3470214	3470705	.	-	.	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
Ledus.S2	AUGUSTUS	start_codon	3470703	3470705	.	-	0	transcript_id "Ledus.S2G046700.t3"; gene_id "Ledus.S2G046700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5260.t1 is derived from g2699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22768831	22770031	.	+	.	Ledus.S1G268100
Ledus.S1	AUGUSTUS	transcript	22768883	22770031	.	+	.	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	start_codon	22768883	22768885	.	+	0	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	CDS	22768883	22768955	0.65	+	0	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	exon	22768883	22768955	.	+	.	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	intron	22768956	22769049	.	+	.	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	CDS	22769050	22769269	0.94	+	2	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	exon	22769050	22769269	.	+	.	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	intron	22769270	22769355	.	+	.	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	CDS	22769356	22769552	0.94	+	1	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	exon	22769356	22769552	.	+	.	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	intron	22769553	22769636	.	+	.	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	CDS	22769637	22769729	1	+	2	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	exon	22769637	22769729	.	+	.	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	intron	22769730	22769825	.	+	.	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	CDS	22769826	22770031	0.96	+	2	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	exon	22769826	22770031	.	+	.	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	stop_codon	22770032	22770034	.	+	0	transcript_id "Ledus.S1G268100.t1"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	transcript	22768831	22770031	.	+	.	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	start_codon	22768831	22768833	.	+	0	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	CDS	22768831	22768960	0.29	+	0	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	exon	22768831	22768960	.	+	.	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	intron	22768961	22769049	.	+	.	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	CDS	22769050	22769269	0.96	+	2	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	exon	22769050	22769269	.	+	.	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	intron	22769270	22769355	.	+	.	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	CDS	22769356	22769552	0.96	+	1	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	exon	22769356	22769552	.	+	.	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	intron	22769553	22769636	.	+	.	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	CDS	22769637	22769729	1	+	2	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	exon	22769637	22769729	.	+	.	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	intron	22769730	22769825	.	+	.	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	CDS	22769826	22770031	0.94	+	2	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	exon	22769826	22770031	.	+	.	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
Ledus.S1	AUGUSTUS	stop_codon	22770032	22770034	.	+	0	transcript_id "Ledus.S1G268100.t2"; gene_id "Ledus.S1G268100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4657.t1 is derived from g2095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18803515	18806568	.	+	.	Ledus.S1G207800
Ledus.S1	AUGUSTUS	transcript	18803515	18806568	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	start_codon	18803515	18803517	.	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18803515	18803757	0.92	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18803515	18803757	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18803758	18803841	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18803842	18803904	1	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18803842	18803904	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18803905	18804004	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18804005	18804095	1	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18804005	18804095	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18804096	18804195	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18804196	18804363	1	+	2	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18804196	18804363	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18804364	18804555	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18804556	18804632	1	+	2	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18804556	18804632	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18804633	18804712	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18804713	18804814	1	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18804713	18804814	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18804815	18804902	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18804903	18804977	1	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18804903	18804977	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18804978	18805058	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18805059	18805153	1	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18805059	18805153	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18805154	18805244	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18805245	18805293	1	+	1	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18805245	18805293	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18805294	18805379	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18805380	18805493	1	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18805380	18805493	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18805494	18805578	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18805579	18805665	1	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18805579	18805665	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18805666	18805736	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18805737	18805838	1	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18805737	18805838	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18805839	18805920	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18805921	18806055	1	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18805921	18806055	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18806056	18806127	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18806128	18806234	0.92	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18806128	18806234	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	intron	18806235	18806372	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	CDS	18806373	18806568	0.91	+	1	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	exon	18806373	18806568	.	+	.	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
Ledus.S1	AUGUSTUS	stop_codon	18806569	18806571	.	+	0	transcript_id "Ledus.S1G207800.t1"; gene_id "Ledus.S1G207800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4651.t1 is derived from g2089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18696015	18696905	.	+	.	Ledus.S1G207200
Ledus.S1	AUGUSTUS	transcript	18696015	18696905	.	+	.	transcript_id "Ledus.S1G207200.t1"; gene_id "Ledus.S1G207200"
Ledus.S1	AUGUSTUS	start_codon	18696015	18696017	.	+	0	transcript_id "Ledus.S1G207200.t1"; gene_id "Ledus.S1G207200"
Ledus.S1	AUGUSTUS	CDS	18696015	18696905	0.93	+	0	transcript_id "Ledus.S1G207200.t1"; gene_id "Ledus.S1G207200"
Ledus.S1	AUGUSTUS	exon	18696015	18696905	.	+	.	transcript_id "Ledus.S1G207200.t1"; gene_id "Ledus.S1G207200"
Ledus.S1	AUGUSTUS	stop_codon	18696906	18696908	.	+	0	transcript_id "Ledus.S1G207200.t1"; gene_id "Ledus.S1G207200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg787.t1 is derived from g7648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5082532	5087932	.	+	.	Ledus.S2G066900
Ledus.S2	AUGUSTUS	transcript	5082532	5087932	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	start_codon	5082532	5082534	.	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5082532	5082570	0.47	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5082532	5082570	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5082571	5082749	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5082750	5082913	0.32	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5082750	5082913	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5082914	5083029	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5083030	5083144	0.3	+	1	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5083030	5083144	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5083145	5083451	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5083452	5083526	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5083452	5083526	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5083527	5083638	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5083639	5083752	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5083639	5083752	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5083753	5083872	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5083873	5083977	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5083873	5083977	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5083978	5084076	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5084077	5084283	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5084077	5084283	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5084284	5084442	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5084443	5084685	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5084443	5084685	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5084686	5084773	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5084774	5084881	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5084774	5084881	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5084882	5085083	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5085084	5085254	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5085084	5085254	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5085255	5085343	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5085344	5085541	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5085344	5085541	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5085542	5085637	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5085638	5085994	0.99	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5085638	5085994	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5085995	5086164	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5086165	5086395	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5086165	5086395	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5086396	5086494	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5086495	5086683	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5086495	5086683	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5086684	5086791	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5086792	5086872	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5086792	5086872	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5086873	5086951	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5086952	5087143	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5086952	5087143	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5087144	5087268	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5087269	5087640	1	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5087269	5087640	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	intron	5087641	5087734	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	CDS	5087735	5087932	0.99	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	exon	5087735	5087932	.	+	.	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
Ledus.S2	AUGUSTUS	stop_codon	5087933	5087935	.	+	0	transcript_id "Ledus.S2G066900.t1"; gene_id "Ledus.S2G066900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10590.t1 is derived from g11620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16268972	16271529	.	+	.	Ledus.S3G206700
Ledus.S3	AUGUSTUS	transcript	16268972	16271529	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	start_codon	16268972	16268974	.	+	0	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	CDS	16268972	16269079	0.99	+	0	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	exon	16268972	16269079	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	intron	16269080	16269175	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	CDS	16269176	16269364	1	+	0	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	exon	16269176	16269364	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	intron	16269365	16269550	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	CDS	16269551	16269658	1	+	0	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	exon	16269551	16269658	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	intron	16269659	16269744	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	CDS	16269745	16269849	1	+	0	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	exon	16269745	16269849	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	intron	16269850	16269961	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	CDS	16269962	16270018	1	+	0	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	exon	16269962	16270018	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	intron	16270019	16270155	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	CDS	16270156	16270349	1	+	0	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	exon	16270156	16270349	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	intron	16270350	16270448	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	CDS	16270449	16270548	1	+	1	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	exon	16270449	16270548	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	intron	16270549	16270635	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	CDS	16270636	16270748	1	+	0	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	exon	16270636	16270748	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	intron	16270749	16270841	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	CDS	16270842	16270995	1	+	1	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	exon	16270842	16270995	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	intron	16270996	16271109	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	CDS	16271110	16271187	1	+	0	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	exon	16271110	16271187	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	intron	16271188	16271310	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	CDS	16271311	16271529	1	+	0	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	exon	16271311	16271529	.	+	.	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
Ledus.S3	AUGUSTUS	stop_codon	16271530	16271532	.	+	0	transcript_id "Ledus.S3G206700.t1"; gene_id "Ledus.S3G206700"
# This transcript jg3985.t2 is derived from g1421.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3986.t1 is derived from g1422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13917790	13919246	.	+	.	Ledus.S1G140700
Ledus.S1	AUGUSTUS	transcript	13917790	13919246	.	+	.	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	start_codon	13917790	13917792	.	+	0	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	CDS	13917790	13917859	0.94	+	0	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	exon	13917790	13917859	.	+	.	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	intron	13917860	13917969	.	+	.	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	CDS	13917970	13918181	0.97	+	2	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	exon	13917970	13918181	.	+	.	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	intron	13918182	13918372	.	+	.	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	CDS	13918373	13918555	1	+	0	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	exon	13918373	13918555	.	+	.	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	intron	13918556	13918679	.	+	.	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	CDS	13918680	13918921	0.96	+	0	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	exon	13918680	13918921	.	+	.	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	intron	13918922	13918999	.	+	.	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	CDS	13919000	13919246	0.78	+	1	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	exon	13919000	13919246	.	+	.	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
Ledus.S1	AUGUSTUS	stop_codon	13919247	13919249	.	+	0	transcript_id "Ledus.S1G140700.t1"; gene_id "Ledus.S1G140700"
# This transcript jg11768.t2 is derived from g5387.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11769.t1 is derived from g5388.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6672866	6674876	.	-	.	Ledus.S4G092500
Ledus.S4	AUGUSTUS	transcript	6672866	6674876	.	-	.	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	stop_codon	6672863	6672865	.	-	0	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	CDS	6672866	6672972	0.98	-	2	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	exon	6672866	6672972	.	-	.	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	intron	6672973	6673151	.	-	.	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	CDS	6673152	6673245	1	-	0	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	exon	6673152	6673245	.	-	.	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	intron	6673246	6673336	.	-	.	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	CDS	6673337	6673462	1	-	0	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	exon	6673337	6673462	.	-	.	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	intron	6673463	6673556	.	-	.	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	CDS	6673557	6673691	1	-	0	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	exon	6673557	6673691	.	-	.	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	intron	6673692	6673767	.	-	.	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	CDS	6673768	6673828	1	-	1	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	exon	6673768	6673828	.	-	.	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	intron	6673829	6673983	.	-	.	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	CDS	6673984	6674876	0.93	-	0	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	exon	6673984	6674876	.	-	.	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
Ledus.S4	AUGUSTUS	start_codon	6674874	6674876	.	-	0	transcript_id "Ledus.S4G092500.t1"; gene_id "Ledus.S4G092500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11291.t1 is derived from g4909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3410824	3411108	.	+	.	Ledus.S4G044700
Ledus.S4	AUGUSTUS	transcript	3410824	3411108	.	+	.	transcript_id "Ledus.S4G044700.t1"; gene_id "Ledus.S4G044700"
Ledus.S4	AUGUSTUS	start_codon	3410824	3410826	.	+	0	transcript_id "Ledus.S4G044700.t1"; gene_id "Ledus.S4G044700"
Ledus.S4	AUGUSTUS	CDS	3410824	3411108	0.46	+	0	transcript_id "Ledus.S4G044700.t1"; gene_id "Ledus.S4G044700"
Ledus.S4	AUGUSTUS	exon	3410824	3411108	.	+	.	transcript_id "Ledus.S4G044700.t1"; gene_id "Ledus.S4G044700"
Ledus.S4	AUGUSTUS	stop_codon	3411109	3411111	.	+	0	transcript_id "Ledus.S4G044700.t1"; gene_id "Ledus.S4G044700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7890.t1 is derived from g12561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7699725	7700873	.	+	.	Ledus.S5G066800
Ledus.S5	AUGUSTUS	transcript	7699725	7700873	.	+	.	transcript_id "Ledus.S5G066800.t1"; gene_id "Ledus.S5G066800"
Ledus.S5	AUGUSTUS	start_codon	7699725	7699727	.	+	0	transcript_id "Ledus.S5G066800.t1"; gene_id "Ledus.S5G066800"
Ledus.S5	AUGUSTUS	CDS	7699725	7700873	0.7	+	0	transcript_id "Ledus.S5G066800.t1"; gene_id "Ledus.S5G066800"
Ledus.S5	AUGUSTUS	exon	7699725	7700873	.	+	.	transcript_id "Ledus.S5G066800.t1"; gene_id "Ledus.S5G066800"
Ledus.S5	AUGUSTUS	stop_codon	7700874	7700876	.	+	0	transcript_id "Ledus.S5G066800.t1"; gene_id "Ledus.S5G066800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg41.t1 is derived from g9454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	35374	37035	.	+	.	Ledus.C8G000100
Ledus.C8	AUGUSTUS	transcript	35374	37035	.	+	.	transcript_id "Ledus.C8G000100.t1"; gene_id "Ledus.C8G000100"
Ledus.C8	AUGUSTUS	start_codon	35374	35376	.	+	0	transcript_id "Ledus.C8G000100.t1"; gene_id "Ledus.C8G000100"
Ledus.C8	AUGUSTUS	CDS	35374	37035	1	+	0	transcript_id "Ledus.C8G000100.t1"; gene_id "Ledus.C8G000100"
Ledus.C8	AUGUSTUS	exon	35374	37035	.	+	.	transcript_id "Ledus.C8G000100.t1"; gene_id "Ledus.C8G000100"
Ledus.C8	AUGUSTUS	stop_codon	37036	37038	.	+	0	transcript_id "Ledus.C8G000100.t1"; gene_id "Ledus.C8G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4993.t1 is derived from g2431.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21052179	21053572	.	-	.	Ledus.S1G241400
Ledus.S1	AUGUSTUS	transcript	21052179	21053572	.	-	.	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	stop_codon	21052176	21052178	.	-	0	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21052179	21052388	0.84	-	0	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21052179	21052388	.	-	.	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	intron	21052389	21052459	.	-	.	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21052460	21052542	1	-	2	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21052460	21052542	.	-	.	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	intron	21052543	21052722	.	-	.	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21052723	21052909	1	-	0	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21052723	21052909	.	-	.	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	intron	21052910	21053011	.	-	.	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21053012	21053196	0.98	-	2	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21053012	21053196	.	-	.	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	intron	21053197	21053286	.	-	.	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21053287	21053572	0.6	-	0	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21053287	21053572	.	-	.	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	start_codon	21053570	21053572	.	-	0	transcript_id "Ledus.S1G241400.t1"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	transcript	21052179	21053572	.	-	.	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	stop_codon	21052176	21052178	.	-	0	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21052179	21052388	0.77	-	0	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21052179	21052388	.	-	.	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	intron	21052389	21052459	.	-	.	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21052460	21052542	1	-	2	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21052460	21052542	.	-	.	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	intron	21052543	21052722	.	-	.	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21052723	21052909	1	-	0	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21052723	21052909	.	-	.	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	intron	21052910	21053011	.	-	.	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21053012	21053206	0.98	-	0	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21053012	21053206	.	-	.	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	intron	21053207	21053419	.	-	.	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21053420	21053572	0.66	-	0	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21053420	21053572	.	-	.	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	start_codon	21053570	21053572	.	-	0	transcript_id "Ledus.S1G241400.t2"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	transcript	21052179	21053304	.	-	.	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	stop_codon	21052176	21052178	.	-	0	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21052179	21052388	0.81	-	0	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21052179	21052388	.	-	.	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	intron	21052389	21052459	.	-	.	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21052460	21052542	1	-	2	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21052460	21052542	.	-	.	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	intron	21052543	21052722	.	-	.	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21052723	21052909	1	-	0	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21052723	21052909	.	-	.	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	intron	21052910	21053011	.	-	.	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21053012	21053206	1	-	0	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21053012	21053206	.	-	.	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	intron	21053207	21053286	.	-	.	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	CDS	21053287	21053304	0.39	-	0	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	exon	21053287	21053304	.	-	.	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
Ledus.S1	AUGUSTUS	start_codon	21053302	21053304	.	-	0	transcript_id "Ledus.S1G241400.t3"; gene_id "Ledus.S1G241400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2310.t1 is derived from g9173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17125269	17127680	.	-	.	Ledus.S2G219200
Ledus.S2	AUGUSTUS	transcript	17125269	17127680	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	stop_codon	17125266	17125268	.	-	0	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	CDS	17125269	17125317	1	-	1	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	exon	17125269	17125317	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	intron	17125318	17125411	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	CDS	17125412	17125459	1	-	1	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	exon	17125412	17125459	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	intron	17125460	17125534	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	CDS	17125535	17125590	1	-	0	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	exon	17125535	17125590	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	intron	17125591	17125699	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	CDS	17125700	17125767	1	-	2	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	exon	17125700	17125767	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	intron	17125768	17125853	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	CDS	17125854	17125915	1	-	1	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	exon	17125854	17125915	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	intron	17125916	17126123	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	CDS	17126124	17126172	1	-	2	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	exon	17126124	17126172	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	intron	17126173	17126273	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	CDS	17126274	17126355	0.97	-	0	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	exon	17126274	17126355	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	intron	17126356	17126519	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	CDS	17126520	17126597	1	-	0	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	exon	17126520	17126597	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	intron	17126598	17126730	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	CDS	17126731	17126789	1	-	2	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	exon	17126731	17126789	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	intron	17126790	17126923	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	CDS	17126924	17127002	1	-	0	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	exon	17126924	17127002	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	intron	17127003	17127153	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	CDS	17127154	17127291	1	-	0	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	exon	17127154	17127291	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	intron	17127292	17127593	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	CDS	17127594	17127680	0.85	-	0	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	exon	17127594	17127680	.	-	.	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
Ledus.S2	AUGUSTUS	start_codon	17127678	17127680	.	-	0	transcript_id "Ledus.S2G219200.t1"; gene_id "Ledus.S2G219200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11629.t1 is derived from g5247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5678236	5678775	.	-	.	Ledus.S4G078500
Ledus.S4	AUGUSTUS	transcript	5678236	5678775	.	-	.	transcript_id "Ledus.S4G078500.t1"; gene_id "Ledus.S4G078500"
Ledus.S4	AUGUSTUS	stop_codon	5678233	5678235	.	-	0	transcript_id "Ledus.S4G078500.t1"; gene_id "Ledus.S4G078500"
Ledus.S4	AUGUSTUS	CDS	5678236	5678775	0.89	-	0	transcript_id "Ledus.S4G078500.t1"; gene_id "Ledus.S4G078500"
Ledus.S4	AUGUSTUS	exon	5678236	5678775	.	-	.	transcript_id "Ledus.S4G078500.t1"; gene_id "Ledus.S4G078500"
Ledus.S4	AUGUSTUS	start_codon	5678773	5678775	.	-	0	transcript_id "Ledus.S4G078500.t1"; gene_id "Ledus.S4G078500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7944.t1 is derived from g12615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8001806	8002632	.	-	.	Ledus.S5G072200
Ledus.S5	AUGUSTUS	transcript	8001806	8002632	.	-	.	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	stop_codon	8001803	8001805	.	-	0	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	CDS	8001806	8001856	0.99	-	0	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	exon	8001806	8001856	.	-	.	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	intron	8001857	8001971	.	-	.	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	CDS	8001972	8002054	1	-	2	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	exon	8001972	8002054	.	-	.	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	intron	8002055	8002142	.	-	.	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	CDS	8002143	8002266	1	-	0	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	exon	8002143	8002266	.	-	.	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	intron	8002267	8002563	.	-	.	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	CDS	8002564	8002632	0.97	-	0	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	exon	8002564	8002632	.	-	.	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
Ledus.S5	AUGUSTUS	start_codon	8002630	8002632	.	-	0	transcript_id "Ledus.S5G072200.t1"; gene_id "Ledus.S5G072200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10595.t1 is derived from g11625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16285261	16286987	.	-	.	Ledus.S3G207200
Ledus.S3	AUGUSTUS	transcript	16285261	16286987	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	stop_codon	16285258	16285260	.	-	0	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	CDS	16285261	16285329	0.99	-	0	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	exon	16285261	16285329	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	intron	16285330	16285478	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	CDS	16285479	16285511	0.99	-	0	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	exon	16285479	16285511	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	intron	16285512	16285621	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	CDS	16285622	16285726	0.99	-	0	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	exon	16285622	16285726	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	intron	16285727	16285839	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	CDS	16285840	16285968	1	-	0	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	exon	16285840	16285968	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	intron	16285969	16286056	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	CDS	16286057	16286281	1	-	0	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	exon	16286057	16286281	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	intron	16286282	16286457	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	CDS	16286458	16286634	1	-	0	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	exon	16286458	16286634	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	intron	16286635	16286768	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	CDS	16286769	16286987	0.91	-	0	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	exon	16286769	16286987	.	-	.	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
Ledus.S3	AUGUSTUS	start_codon	16286985	16286987	.	-	0	transcript_id "Ledus.S3G207200.t1"; gene_id "Ledus.S3G207200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11259.t1 is derived from g4877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2986536	2989270	.	+	.	Ledus.S4G041500
Ledus.S4	AUGUSTUS	transcript	2986536	2989270	.	+	.	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	start_codon	2986536	2986538	.	+	0	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	CDS	2986536	2986724	0.41	+	0	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	exon	2986536	2986724	.	+	.	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	intron	2986725	2986788	.	+	.	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	CDS	2986789	2986894	1	+	0	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	exon	2986789	2986894	.	+	.	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	intron	2986895	2986981	.	+	.	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	CDS	2986982	2987479	1	+	2	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	exon	2986982	2987479	.	+	.	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	intron	2987480	2987573	.	+	.	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	CDS	2987574	2987831	0.95	+	2	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	exon	2987574	2987831	.	+	.	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	intron	2987832	2987921	.	+	.	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	CDS	2987922	2988002	1	+	2	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	exon	2987922	2988002	.	+	.	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	intron	2988003	2988074	.	+	.	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	CDS	2988075	2989270	1	+	2	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	exon	2988075	2989270	.	+	.	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	stop_codon	2989271	2989273	.	+	0	transcript_id "Ledus.S4G041500.t1"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	transcript	2986536	2989270	.	+	.	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	start_codon	2986536	2986538	.	+	0	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	CDS	2986536	2986724	0.4	+	0	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	exon	2986536	2986724	.	+	.	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	intron	2986725	2986788	.	+	.	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	CDS	2986789	2986894	0.99	+	0	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	exon	2986789	2986894	.	+	.	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	intron	2986895	2986981	.	+	.	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	CDS	2986982	2987479	1	+	2	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	exon	2986982	2987479	.	+	.	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	intron	2987480	2987573	.	+	.	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	CDS	2987574	2987831	0.86	+	2	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	exon	2987574	2987831	.	+	.	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	intron	2987832	2987927	.	+	.	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	CDS	2987928	2988002	1	+	2	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	exon	2987928	2988002	.	+	.	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	intron	2988003	2988074	.	+	.	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	CDS	2988075	2989270	1	+	2	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	exon	2988075	2989270	.	+	.	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
Ledus.S4	AUGUSTUS	stop_codon	2989271	2989273	.	+	0	transcript_id "Ledus.S4G041500.t2"; gene_id "Ledus.S4G041500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg795.t1 is derived from g7656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5141537	5142289	.	+	.	Ledus.S2G067700
Ledus.S2	AUGUSTUS	transcript	5141537	5142289	.	+	.	transcript_id "Ledus.S2G067700.t1"; gene_id "Ledus.S2G067700"
Ledus.S2	AUGUSTUS	start_codon	5141537	5141539	.	+	0	transcript_id "Ledus.S2G067700.t1"; gene_id "Ledus.S2G067700"
Ledus.S2	AUGUSTUS	CDS	5141537	5142289	0.63	+	0	transcript_id "Ledus.S2G067700.t1"; gene_id "Ledus.S2G067700"
Ledus.S2	AUGUSTUS	exon	5141537	5142289	.	+	.	transcript_id "Ledus.S2G067700.t1"; gene_id "Ledus.S2G067700"
Ledus.S2	AUGUSTUS	stop_codon	5142290	5142292	.	+	0	transcript_id "Ledus.S2G067700.t1"; gene_id "Ledus.S2G067700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11527.t1 is derived from g5145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5129006	5129853	.	+	.	Ledus.S4G068300
Ledus.S4	AUGUSTUS	transcript	5129006	5129853	.	+	.	transcript_id "Ledus.S4G068300.t1"; gene_id "Ledus.S4G068300"
Ledus.S4	AUGUSTUS	start_codon	5129006	5129008	.	+	0	transcript_id "Ledus.S4G068300.t1"; gene_id "Ledus.S4G068300"
Ledus.S4	AUGUSTUS	CDS	5129006	5129338	0.91	+	0	transcript_id "Ledus.S4G068300.t1"; gene_id "Ledus.S4G068300"
Ledus.S4	AUGUSTUS	exon	5129006	5129338	.	+	.	transcript_id "Ledus.S4G068300.t1"; gene_id "Ledus.S4G068300"
Ledus.S4	AUGUSTUS	intron	5129339	5129426	.	+	.	transcript_id "Ledus.S4G068300.t1"; gene_id "Ledus.S4G068300"
Ledus.S4	AUGUSTUS	CDS	5129427	5129565	0.87	+	0	transcript_id "Ledus.S4G068300.t1"; gene_id "Ledus.S4G068300"
Ledus.S4	AUGUSTUS	exon	5129427	5129565	.	+	.	transcript_id "Ledus.S4G068300.t1"; gene_id "Ledus.S4G068300"
Ledus.S4	AUGUSTUS	intron	5129566	5129671	.	+	.	transcript_id "Ledus.S4G068300.t1"; gene_id "Ledus.S4G068300"
Ledus.S4	AUGUSTUS	CDS	5129672	5129853	0.9	+	2	transcript_id "Ledus.S4G068300.t1"; gene_id "Ledus.S4G068300"
Ledus.S4	AUGUSTUS	exon	5129672	5129853	.	+	.	transcript_id "Ledus.S4G068300.t1"; gene_id "Ledus.S4G068300"
Ledus.S4	AUGUSTUS	stop_codon	5129854	5129856	.	+	0	transcript_id "Ledus.S4G068300.t1"; gene_id "Ledus.S4G068300"
# This transcript jg6370.t2 is derived from g3813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6371.t1 is derived from g3814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30802901	30803410	.	-	.	Ledus.S1G379200
Ledus.S1	AUGUSTUS	transcript	30802901	30803410	.	-	.	transcript_id "Ledus.S1G379200.t1"; gene_id "Ledus.S1G379200"
Ledus.S1	AUGUSTUS	stop_codon	30802898	30802900	.	-	0	transcript_id "Ledus.S1G379200.t1"; gene_id "Ledus.S1G379200"
Ledus.S1	AUGUSTUS	CDS	30802901	30803410	1	-	0	transcript_id "Ledus.S1G379200.t1"; gene_id "Ledus.S1G379200"
Ledus.S1	AUGUSTUS	exon	30802901	30803410	.	-	.	transcript_id "Ledus.S1G379200.t1"; gene_id "Ledus.S1G379200"
Ledus.S1	AUGUSTUS	start_codon	30803408	30803410	.	-	0	transcript_id "Ledus.S1G379200.t1"; gene_id "Ledus.S1G379200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11081.t1 is derived from g4699.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1636378	1638481	.	-	.	Ledus.S4G023700
Ledus.S4	AUGUSTUS	transcript	1636378	1638481	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	stop_codon	1636375	1636377	.	-	0	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1636378	1636449	1	-	0	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1636378	1636449	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1636450	1636542	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1636543	1636656	1	-	0	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1636543	1636656	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1636657	1636752	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1636753	1636800	1	-	0	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1636753	1636800	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1636801	1636892	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1636893	1637027	1	-	0	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1636893	1637027	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1637028	1637108	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1637109	1637264	1	-	0	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1637109	1637264	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1637265	1637356	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1637357	1637432	1	-	1	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1637357	1637432	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1637433	1637526	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1637527	1637843	1	-	0	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1637527	1637843	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1637844	1637949	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1637950	1638054	0.9	-	0	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1637950	1638054	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1638055	1638128	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1638129	1638137	0.86	-	0	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1638129	1638137	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1638138	1638219	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1638220	1638291	0.83	-	0	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1638220	1638291	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1638292	1638454	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1638455	1638481	0.69	-	0	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1638455	1638481	.	-	.	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	start_codon	1638479	1638481	.	-	0	transcript_id "Ledus.S4G023700.t1"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	transcript	1636378	1638481	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	stop_codon	1636375	1636377	.	-	0	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1636378	1636443	0.97	-	0	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1636378	1636443	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1636444	1636542	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1636543	1636656	1	-	0	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1636543	1636656	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1636657	1636752	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1636753	1636800	1	-	0	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1636753	1636800	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1636801	1636892	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1636893	1637027	1	-	0	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1636893	1637027	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1637028	1637108	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1637109	1637264	1	-	0	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1637109	1637264	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1637265	1637356	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1637357	1637432	1	-	1	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1637357	1637432	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1637433	1637526	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1637527	1637843	1	-	0	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1637527	1637843	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1637844	1637949	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1637950	1638054	0.91	-	0	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1637950	1638054	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1638055	1638128	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1638129	1638137	0.82	-	0	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1638129	1638137	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1638138	1638219	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1638220	1638291	0.73	-	0	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1638220	1638291	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	intron	1638292	1638454	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	CDS	1638455	1638481	0.64	-	0	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	exon	1638455	1638481	.	-	.	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
Ledus.S4	AUGUSTUS	start_codon	1638479	1638481	.	-	0	transcript_id "Ledus.S4G023700.t2"; gene_id "Ledus.S4G023700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7028.t1 is derived from g6559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	894241	895105	.	+	.	Ledus.C7G008900
Ledus.C7	AUGUSTUS	transcript	894241	895105	.	+	.	transcript_id "Ledus.C7G008900.t1"; gene_id "Ledus.C7G008900"
Ledus.C7	AUGUSTUS	start_codon	894241	894243	.	+	0	transcript_id "Ledus.C7G008900.t1"; gene_id "Ledus.C7G008900"
Ledus.C7	AUGUSTUS	CDS	894241	894345	0.44	+	0	transcript_id "Ledus.C7G008900.t1"; gene_id "Ledus.C7G008900"
Ledus.C7	AUGUSTUS	exon	894241	894345	.	+	.	transcript_id "Ledus.C7G008900.t1"; gene_id "Ledus.C7G008900"
Ledus.C7	AUGUSTUS	intron	894346	894922	.	+	.	transcript_id "Ledus.C7G008900.t1"; gene_id "Ledus.C7G008900"
Ledus.C7	AUGUSTUS	CDS	894923	895105	0.64	+	0	transcript_id "Ledus.C7G008900.t1"; gene_id "Ledus.C7G008900"
Ledus.C7	AUGUSTUS	exon	894923	895105	.	+	.	transcript_id "Ledus.C7G008900.t1"; gene_id "Ledus.C7G008900"
Ledus.C7	AUGUSTUS	stop_codon	895106	895108	.	+	0	transcript_id "Ledus.C7G008900.t1"; gene_id "Ledus.C7G008900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2234.t1 is derived from g9097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16223511	16223968	.	-	.	Ledus.S2G211600
Ledus.S2	AUGUSTUS	transcript	16223511	16223968	.	-	.	transcript_id "Ledus.S2G211600.t1"; gene_id "Ledus.S2G211600"
Ledus.S2	AUGUSTUS	stop_codon	16223508	16223510	.	-	0	transcript_id "Ledus.S2G211600.t1"; gene_id "Ledus.S2G211600"
Ledus.S2	AUGUSTUS	CDS	16223511	16223558	1	-	0	transcript_id "Ledus.S2G211600.t1"; gene_id "Ledus.S2G211600"
Ledus.S2	AUGUSTUS	exon	16223511	16223558	.	-	.	transcript_id "Ledus.S2G211600.t1"; gene_id "Ledus.S2G211600"
Ledus.S2	AUGUSTUS	intron	16223559	16223749	.	-	.	transcript_id "Ledus.S2G211600.t1"; gene_id "Ledus.S2G211600"
Ledus.S2	AUGUSTUS	CDS	16223750	16223968	0.3	-	0	transcript_id "Ledus.S2G211600.t1"; gene_id "Ledus.S2G211600"
Ledus.S2	AUGUSTUS	exon	16223750	16223968	.	-	.	transcript_id "Ledus.S2G211600.t1"; gene_id "Ledus.S2G211600"
Ledus.S2	AUGUSTUS	start_codon	16223966	16223968	.	-	0	transcript_id "Ledus.S2G211600.t1"; gene_id "Ledus.S2G211600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5545.t1 is derived from g2984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25061803	25064836	.	-	.	Ledus.S1G296600
Ledus.S1	AUGUSTUS	transcript	25061803	25064836	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	stop_codon	25061800	25061802	.	-	0	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	CDS	25061803	25061883	0.84	-	0	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	exon	25061803	25061883	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	intron	25061884	25062096	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	CDS	25062097	25062218	1	-	2	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	exon	25062097	25062218	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	intron	25062219	25062341	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	CDS	25062342	25062394	1	-	1	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	exon	25062342	25062394	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	intron	25062395	25062549	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	CDS	25062550	25062645	1	-	1	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	exon	25062550	25062645	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	intron	25062646	25062878	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	CDS	25062879	25062981	1	-	2	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	exon	25062879	25062981	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	intron	25062982	25063270	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	CDS	25063271	25063331	1	-	0	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	exon	25063271	25063331	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	intron	25063332	25063413	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	CDS	25063414	25063485	0.91	-	0	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	exon	25063414	25063485	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	intron	25063486	25063591	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	CDS	25063592	25063672	0.99	-	0	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	exon	25063592	25063672	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	intron	25063673	25063806	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	CDS	25063807	25063875	1	-	0	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	exon	25063807	25063875	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	intron	25063876	25064098	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	CDS	25064099	25064185	1	-	0	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	exon	25064099	25064185	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	intron	25064186	25064307	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	CDS	25064308	25064531	0.48	-	2	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	exon	25064308	25064531	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	intron	25064532	25064700	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	CDS	25064701	25064836	0.49	-	0	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	exon	25064701	25064836	.	-	.	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
Ledus.S1	AUGUSTUS	start_codon	25064834	25064836	.	-	0	transcript_id "Ledus.S1G296600.t1"; gene_id "Ledus.S1G296600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6628.t1 is derived from g4071.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32790970	32792790	.	-	.	Ledus.S1G404900
Ledus.S1	AUGUSTUS	transcript	32790970	32792790	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	stop_codon	32790967	32790969	.	-	0	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	CDS	32790970	32791030	1	-	1	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	exon	32790970	32791030	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	intron	32791031	32791122	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	CDS	32791123	32791238	1	-	0	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	exon	32791123	32791238	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	intron	32791239	32791324	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	CDS	32791325	32791399	1	-	0	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	exon	32791325	32791399	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	intron	32791400	32791485	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	CDS	32791486	32791608	1	-	0	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	exon	32791486	32791608	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	intron	32791609	32791686	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	CDS	32791687	32791819	1	-	1	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	exon	32791687	32791819	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	intron	32791820	32791905	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	CDS	32791906	32792036	1	-	0	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	exon	32791906	32792036	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	intron	32792037	32792119	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	CDS	32792120	32792355	1	-	2	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	exon	32792120	32792355	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	intron	32792356	32792438	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	CDS	32792439	32792790	0.91	-	0	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	exon	32792439	32792790	.	-	.	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
Ledus.S1	AUGUSTUS	start_codon	32792788	32792790	.	-	0	transcript_id "Ledus.S1G404900.t1"; gene_id "Ledus.S1G404900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7301.t1 is derived from g11972.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	879426	882964	.	+	.	Ledus.S5G007900
Ledus.S5	AUGUSTUS	transcript	879426	882964	.	+	.	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	start_codon	879426	879428	.	+	0	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	CDS	879426	880702	0.83	+	0	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	exon	879426	880702	.	+	.	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	intron	880703	880782	.	+	.	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	CDS	880783	881117	0.97	+	1	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	exon	880783	881117	.	+	.	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	intron	881118	881251	.	+	.	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	CDS	881252	881630	0.5	+	2	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	exon	881252	881630	.	+	.	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	intron	881631	881715	.	+	.	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	CDS	881716	881918	0.7	+	1	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	exon	881716	881918	.	+	.	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	intron	881919	882021	.	+	.	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	CDS	882022	882641	0.73	+	2	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	exon	882022	882641	.	+	.	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	intron	882642	882736	.	+	.	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	CDS	882737	882964	0.51	+	0	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	exon	882737	882964	.	+	.	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
Ledus.S5	AUGUSTUS	stop_codon	882965	882967	.	+	0	transcript_id "Ledus.S5G007900.t1"; gene_id "Ledus.S5G007900"
# This transcript jg8348.t2 is derived from g13020.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8349.t1 is derived from g13021.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10943279	10944870	.	+	.	Ledus.S5G112700
Ledus.S5	AUGUSTUS	transcript	10943279	10944870	.	+	.	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	start_codon	10943279	10943281	.	+	0	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	CDS	10943279	10944367	0.93	+	0	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	exon	10943279	10944367	.	+	.	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	intron	10944368	10944449	.	+	.	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	CDS	10944450	10944502	0.63	+	0	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	exon	10944450	10944502	.	+	.	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	intron	10944503	10944585	.	+	.	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	CDS	10944586	10944679	0.63	+	1	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	exon	10944586	10944679	.	+	.	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	intron	10944680	10944834	.	+	.	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	CDS	10944835	10944870	0.63	+	0	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	exon	10944835	10944870	.	+	.	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
Ledus.S5	AUGUSTUS	stop_codon	10944871	10944873	.	+	0	transcript_id "Ledus.S5G112700.t1"; gene_id "Ledus.S5G112700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2691.t1 is derived from g124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1861442	1861678	.	-	.	Ledus.S1G011200
Ledus.S1	AUGUSTUS	transcript	1861442	1861678	.	-	.	transcript_id "Ledus.S1G011200.t1"; gene_id "Ledus.S1G011200"
Ledus.S1	AUGUSTUS	stop_codon	1861439	1861441	.	-	0	transcript_id "Ledus.S1G011200.t1"; gene_id "Ledus.S1G011200"
Ledus.S1	AUGUSTUS	CDS	1861442	1861678	0.98	-	0	transcript_id "Ledus.S1G011200.t1"; gene_id "Ledus.S1G011200"
Ledus.S1	AUGUSTUS	exon	1861442	1861678	.	-	.	transcript_id "Ledus.S1G011200.t1"; gene_id "Ledus.S1G011200"
Ledus.S1	AUGUSTUS	start_codon	1861676	1861678	.	-	0	transcript_id "Ledus.S1G011200.t1"; gene_id "Ledus.S1G011200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9217.t1 is derived from g10247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5450761	5457656	.	-	.	Ledus.S3G069400
Ledus.S3	AUGUSTUS	transcript	5450761	5457656	.	-	.	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	stop_codon	5450758	5450760	.	-	0	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	CDS	5450761	5453547	0.97	-	0	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	exon	5450761	5453547	.	-	.	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	intron	5453548	5453625	.	-	.	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	CDS	5453626	5453882	1	-	2	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	exon	5453626	5453882	.	-	.	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	intron	5453883	5453958	.	-	.	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	CDS	5453959	5455204	0.92	-	0	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	exon	5453959	5455204	.	-	.	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	intron	5455205	5455372	.	-	.	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	CDS	5455373	5455726	0.98	-	0	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	exon	5455373	5455726	.	-	.	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	intron	5455727	5455921	.	-	.	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	CDS	5455922	5457149	0.99	-	1	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	exon	5455922	5457149	.	-	.	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	intron	5457150	5457243	.	-	.	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	CDS	5457244	5457656	0.94	-	0	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	exon	5457244	5457656	.	-	.	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
Ledus.S3	AUGUSTUS	start_codon	5457654	5457656	.	-	0	transcript_id "Ledus.S3G069400.t1"; gene_id "Ledus.S3G069400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10814.t1 is derived from g11846.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18011139	18012532	.	-	.	Ledus.S3G229100
Ledus.S3	AUGUSTUS	transcript	18011139	18012532	.	-	.	transcript_id "Ledus.S3G229100.t1"; gene_id "Ledus.S3G229100"
Ledus.S3	AUGUSTUS	stop_codon	18011136	18011138	.	-	0	transcript_id "Ledus.S3G229100.t1"; gene_id "Ledus.S3G229100"
Ledus.S3	AUGUSTUS	CDS	18011139	18011993	1	-	0	transcript_id "Ledus.S3G229100.t1"; gene_id "Ledus.S3G229100"
Ledus.S3	AUGUSTUS	exon	18011139	18011993	.	-	.	transcript_id "Ledus.S3G229100.t1"; gene_id "Ledus.S3G229100"
Ledus.S3	AUGUSTUS	intron	18011994	18012073	.	-	.	transcript_id "Ledus.S3G229100.t1"; gene_id "Ledus.S3G229100"
Ledus.S3	AUGUSTUS	CDS	18012074	18012532	0.95	-	0	transcript_id "Ledus.S3G229100.t1"; gene_id "Ledus.S3G229100"
Ledus.S3	AUGUSTUS	exon	18012074	18012532	.	-	.	transcript_id "Ledus.S3G229100.t1"; gene_id "Ledus.S3G229100"
Ledus.S3	AUGUSTUS	start_codon	18012530	18012532	.	-	0	transcript_id "Ledus.S3G229100.t1"; gene_id "Ledus.S3G229100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg424.t1 is derived from g7285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2390601	2396552	.	-	.	Ledus.S2G030600
Ledus.S2	AUGUSTUS	transcript	2390601	2396552	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	stop_codon	2390598	2390600	.	-	0	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	CDS	2390601	2390814	1	-	1	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	exon	2390601	2390814	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	intron	2390815	2390972	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	CDS	2390973	2391169	1	-	0	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	exon	2390973	2391169	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	intron	2391170	2391427	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	CDS	2391428	2391568	1	-	0	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	exon	2391428	2391568	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	intron	2391569	2391656	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	CDS	2391657	2391891	1	-	1	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	exon	2391657	2391891	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	intron	2391892	2391970	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	CDS	2391971	2392232	0.82	-	2	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	exon	2391971	2392232	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	intron	2392233	2392465	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	CDS	2392466	2392790	0.7	-	0	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	exon	2392466	2392790	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	intron	2392791	2392883	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	CDS	2392884	2394334	0.47	-	2	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	exon	2392884	2394334	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	intron	2394335	2394430	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	CDS	2394431	2394620	0.61	-	0	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	exon	2394431	2394620	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	intron	2394621	2394697	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	CDS	2394698	2395092	0.68	-	2	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	exon	2394698	2395092	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	intron	2395093	2395391	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	CDS	2395392	2395644	0.94	-	0	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	exon	2395392	2395644	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	intron	2395645	2395736	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	CDS	2395737	2396552	0.94	-	0	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	exon	2395737	2396552	.	-	.	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
Ledus.S2	AUGUSTUS	start_codon	2396550	2396552	.	-	0	transcript_id "Ledus.S2G030600.t1"; gene_id "Ledus.S2G030600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5328.t1 is derived from g2767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23386420	23388387	.	-	.	Ledus.S1G274900
Ledus.S1	AUGUSTUS	transcript	23386420	23388387	.	-	.	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	stop_codon	23386417	23386419	.	-	0	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	CDS	23386420	23386585	0.85	-	1	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	exon	23386420	23386585	.	-	.	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	intron	23386586	23386684	.	-	.	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	CDS	23386685	23386824	1	-	0	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	exon	23386685	23386824	.	-	.	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	intron	23386825	23386904	.	-	.	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	CDS	23386905	23387152	1	-	2	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	exon	23386905	23387152	.	-	.	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	intron	23387153	23387274	.	-	.	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	CDS	23387275	23387496	1	-	2	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	exon	23387275	23387496	.	-	.	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	intron	23387497	23387627	.	-	.	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	CDS	23387628	23388300	0.71	-	0	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	exon	23387628	23388300	.	-	.	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	intron	23388301	23388381	.	-	.	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	CDS	23388382	23388387	0.66	-	0	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	exon	23388382	23388387	.	-	.	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
Ledus.S1	AUGUSTUS	start_codon	23388385	23388387	.	-	0	transcript_id "Ledus.S1G274900.t1"; gene_id "Ledus.S1G274900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3965.t1 is derived from g1401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13803952	13806334	.	+	.	Ledus.S1G138600
Ledus.S1	AUGUSTUS	transcript	13803952	13806334	.	+	.	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	start_codon	13803952	13803954	.	+	0	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13803952	13804344	0.97	+	0	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13803952	13804344	.	+	.	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	intron	13804345	13804531	.	+	.	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13804532	13804743	1	+	0	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13804532	13804743	.	+	.	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	intron	13804744	13805008	.	+	.	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13805009	13805309	1	+	1	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13805009	13805309	.	+	.	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	intron	13805310	13805436	.	+	.	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13805437	13805544	1	+	0	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13805437	13805544	.	+	.	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	intron	13805545	13805620	.	+	.	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13805621	13805868	1	+	0	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13805621	13805868	.	+	.	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	intron	13805869	13806204	.	+	.	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13806205	13806334	0.94	+	1	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13806205	13806334	.	+	.	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	stop_codon	13806335	13806337	.	+	0	transcript_id "Ledus.S1G138600.t1"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	transcript	13803952	13806267	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	start_codon	13803952	13803954	.	+	0	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13803952	13804344	0.96	+	0	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13803952	13804344	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	intron	13804345	13804531	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13804532	13804743	1	+	0	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13804532	13804743	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	intron	13804744	13805008	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13805009	13805309	1	+	1	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13805009	13805309	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	intron	13805310	13805436	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13805437	13805544	1	+	0	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13805437	13805544	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	intron	13805545	13805620	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13805621	13805868	0.4	+	0	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13805621	13805868	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	intron	13805869	13805936	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13805937	13806009	0.46	+	1	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13805937	13806009	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	intron	13806010	13806204	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	CDS	13806205	13806267	0.88	+	0	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	exon	13806205	13806267	.	+	.	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
Ledus.S1	AUGUSTUS	stop_codon	13806268	13806270	.	+	0	transcript_id "Ledus.S1G138600.t2"; gene_id "Ledus.S1G138600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7520.t1 is derived from g12191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3558493	3559645	.	-	.	Ledus.S5G029800
Ledus.S5	AUGUSTUS	transcript	3558493	3559645	.	-	.	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	stop_codon	3558490	3558492	.	-	0	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	CDS	3558493	3558638	0.6	-	2	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	exon	3558493	3558638	.	-	.	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	intron	3558639	3558757	.	-	.	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	CDS	3558758	3559001	0.63	-	0	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	exon	3558758	3559001	.	-	.	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	intron	3559002	3559092	.	-	.	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	CDS	3559093	3559194	1	-	0	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	exon	3559093	3559194	.	-	.	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	intron	3559195	3559277	.	-	.	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	CDS	3559278	3559340	1	-	0	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	exon	3559278	3559340	.	-	.	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	intron	3559341	3559417	.	-	.	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	CDS	3559418	3559504	1	-	0	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	exon	3559418	3559504	.	-	.	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	intron	3559505	3559570	.	-	.	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	CDS	3559571	3559645	0.99	-	0	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	exon	3559571	3559645	.	-	.	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
Ledus.S5	AUGUSTUS	start_codon	3559643	3559645	.	-	0	transcript_id "Ledus.S5G029800.t1"; gene_id "Ledus.S5G029800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg522.t1 is derived from g7383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3025160	3027373	.	-	.	Ledus.S2G040400
Ledus.S2	AUGUSTUS	transcript	3025160	3027373	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	stop_codon	3025157	3025159	.	-	0	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	CDS	3025160	3025222	0.96	-	0	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	exon	3025160	3025222	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	intron	3025223	3025315	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	CDS	3025316	3025421	0.98	-	1	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	exon	3025316	3025421	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	intron	3025422	3025707	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	CDS	3025708	3025775	0.72	-	0	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	exon	3025708	3025775	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	intron	3025776	3025879	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	CDS	3025880	3025952	1	-	1	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	exon	3025880	3025952	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	intron	3025953	3026041	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	CDS	3026042	3026128	1	-	1	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	exon	3026042	3026128	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	intron	3026129	3026221	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	CDS	3026222	3026292	1	-	0	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	exon	3026222	3026292	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	intron	3026293	3026429	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	CDS	3026430	3026505	1	-	1	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	exon	3026430	3026505	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	intron	3026506	3026622	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	CDS	3026623	3026735	1	-	0	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	exon	3026623	3026735	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	intron	3026736	3026834	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	CDS	3026835	3026918	1	-	0	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	exon	3026835	3026918	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	intron	3026919	3027009	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	CDS	3027010	3027069	1	-	0	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	exon	3027010	3027069	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	intron	3027070	3027214	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	CDS	3027215	3027373	0.99	-	0	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	exon	3027215	3027373	.	-	.	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
Ledus.S2	AUGUSTUS	start_codon	3027371	3027373	.	-	0	transcript_id "Ledus.S2G040400.t1"; gene_id "Ledus.S2G040400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7875.t1 is derived from g12546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7566958	7567911	.	+	.	Ledus.S5G065300
Ledus.S5	AUGUSTUS	transcript	7566958	7567911	.	+	.	transcript_id "Ledus.S5G065300.t1"; gene_id "Ledus.S5G065300"
Ledus.S5	AUGUSTUS	start_codon	7566958	7566960	.	+	0	transcript_id "Ledus.S5G065300.t1"; gene_id "Ledus.S5G065300"
Ledus.S5	AUGUSTUS	CDS	7566958	7567407	0.78	+	0	transcript_id "Ledus.S5G065300.t1"; gene_id "Ledus.S5G065300"
Ledus.S5	AUGUSTUS	exon	7566958	7567407	.	+	.	transcript_id "Ledus.S5G065300.t1"; gene_id "Ledus.S5G065300"
Ledus.S5	AUGUSTUS	intron	7567408	7567485	.	+	.	transcript_id "Ledus.S5G065300.t1"; gene_id "Ledus.S5G065300"
Ledus.S5	AUGUSTUS	CDS	7567486	7567692	1	+	0	transcript_id "Ledus.S5G065300.t1"; gene_id "Ledus.S5G065300"
Ledus.S5	AUGUSTUS	exon	7567486	7567692	.	+	.	transcript_id "Ledus.S5G065300.t1"; gene_id "Ledus.S5G065300"
Ledus.S5	AUGUSTUS	intron	7567693	7567770	.	+	.	transcript_id "Ledus.S5G065300.t1"; gene_id "Ledus.S5G065300"
Ledus.S5	AUGUSTUS	CDS	7567771	7567911	0.67	+	0	transcript_id "Ledus.S5G065300.t1"; gene_id "Ledus.S5G065300"
Ledus.S5	AUGUSTUS	exon	7567771	7567911	.	+	.	transcript_id "Ledus.S5G065300.t1"; gene_id "Ledus.S5G065300"
Ledus.S5	AUGUSTUS	stop_codon	7567912	7567914	.	+	0	transcript_id "Ledus.S5G065300.t1"; gene_id "Ledus.S5G065300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2041.t1 is derived from g8904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14295621	14296850	.	-	.	Ledus.S2G192300
Ledus.S2	AUGUSTUS	transcript	14295621	14296850	.	-	.	transcript_id "Ledus.S2G192300.t1"; gene_id "Ledus.S2G192300"
Ledus.S2	AUGUSTUS	stop_codon	14295618	14295620	.	-	0	transcript_id "Ledus.S2G192300.t1"; gene_id "Ledus.S2G192300"
Ledus.S2	AUGUSTUS	CDS	14295621	14296850	1	-	0	transcript_id "Ledus.S2G192300.t1"; gene_id "Ledus.S2G192300"
Ledus.S2	AUGUSTUS	exon	14295621	14296850	.	-	.	transcript_id "Ledus.S2G192300.t1"; gene_id "Ledus.S2G192300"
Ledus.S2	AUGUSTUS	start_codon	14296848	14296850	.	-	0	transcript_id "Ledus.S2G192300.t1"; gene_id "Ledus.S2G192300"
# This transcript jg2423.t2 is derived from g9286.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2424.t1 is derived from g9287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18055964	18057157	.	+	.	Ledus.S2G230600
Ledus.S2	AUGUSTUS	transcript	18055964	18057157	.	+	.	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	start_codon	18055964	18055966	.	+	0	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	CDS	18055964	18056389	0.95	+	0	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	exon	18055964	18056389	.	+	.	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	intron	18056390	18056469	.	+	.	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	CDS	18056470	18056600	1	+	0	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	exon	18056470	18056600	.	+	.	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	intron	18056601	18056720	.	+	.	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	CDS	18056721	18056808	0.52	+	1	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	exon	18056721	18056808	.	+	.	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	intron	18056809	18056923	.	+	.	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	CDS	18056924	18056931	0.87	+	0	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	exon	18056924	18056931	.	+	.	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	intron	18056932	18057017	.	+	.	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	CDS	18057018	18057057	0.97	+	1	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	exon	18057018	18057057	.	+	.	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	intron	18057058	18057127	.	+	.	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	CDS	18057128	18057157	0.95	+	0	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	exon	18057128	18057157	.	+	.	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
Ledus.S2	AUGUSTUS	stop_codon	18057158	18057160	.	+	0	transcript_id "Ledus.S2G230600.t1"; gene_id "Ledus.S2G230600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1065.t1 is derived from g7926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7211381	7212067	.	+	.	Ledus.S2G094700
Ledus.S2	AUGUSTUS	transcript	7211381	7212067	.	+	.	transcript_id "Ledus.S2G094700.t1"; gene_id "Ledus.S2G094700"
Ledus.S2	AUGUSTUS	start_codon	7211381	7211383	.	+	0	transcript_id "Ledus.S2G094700.t1"; gene_id "Ledus.S2G094700"
Ledus.S2	AUGUSTUS	CDS	7211381	7212067	0.87	+	0	transcript_id "Ledus.S2G094700.t1"; gene_id "Ledus.S2G094700"
Ledus.S2	AUGUSTUS	exon	7211381	7212067	.	+	.	transcript_id "Ledus.S2G094700.t1"; gene_id "Ledus.S2G094700"
Ledus.S2	AUGUSTUS	stop_codon	7212068	7212070	.	+	0	transcript_id "Ledus.S2G094700.t1"; gene_id "Ledus.S2G094700"
# This transcript jg13144.t2 is derived from g6954.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13145.t1 is derived from g6955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7215621	7221273	.	+	.	Ledus.S6G020700
Ledus.S6	AUGUSTUS	transcript	7215621	7221273	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	start_codon	7215621	7215623	.	+	0	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7215621	7216190	0.91	+	0	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7215621	7216190	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7216191	7216385	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7216386	7216823	1	+	0	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7216386	7216823	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7216824	7216978	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7216979	7217082	1	+	0	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7216979	7217082	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7217083	7217335	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7217336	7218058	0.91	+	1	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7217336	7218058	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7218059	7218277	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7218278	7218534	0.95	+	1	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7218278	7218534	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7218535	7218870	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7218871	7218911	1	+	2	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7218871	7218911	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7218912	7219125	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7219126	7219194	1	+	0	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7219126	7219194	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7219195	7219374	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7219375	7219475	1	+	0	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7219375	7219475	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7219476	7219882	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7219883	7219961	1	+	1	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7219883	7219961	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7219962	7220211	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7220212	7220310	1	+	0	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7220212	7220310	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7220311	7220495	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7220496	7220564	1	+	0	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7220496	7220564	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7220565	7220683	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7220684	7220733	0.88	+	0	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7220684	7220733	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7220734	7220864	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7220865	7221025	0.61	+	1	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7220865	7221025	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	intron	7221026	7221115	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	CDS	7221116	7221273	0.55	+	2	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	exon	7221116	7221273	.	+	.	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
Ledus.S6	AUGUSTUS	stop_codon	7221274	7221276	.	+	0	transcript_id "Ledus.S6G020700.t1"; gene_id "Ledus.S6G020700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12069.t1 is derived from g5688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9302838	9304582	.	+	.	Ledus.S4G122500
Ledus.S4	AUGUSTUS	transcript	9302838	9303628	.	+	.	transcript_id "Ledus.S4G122500.t1"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	start_codon	9302838	9302840	.	+	0	transcript_id "Ledus.S4G122500.t1"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	CDS	9302838	9303229	0.92	+	0	transcript_id "Ledus.S4G122500.t1"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	exon	9302838	9303229	.	+	.	transcript_id "Ledus.S4G122500.t1"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	intron	9303230	9303297	.	+	.	transcript_id "Ledus.S4G122500.t1"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	CDS	9303298	9303628	1	+	1	transcript_id "Ledus.S4G122500.t1"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	exon	9303298	9303628	.	+	.	transcript_id "Ledus.S4G122500.t1"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	stop_codon	9303629	9303631	.	+	0	transcript_id "Ledus.S4G122500.t1"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	transcript	9302838	9304582	.	+	.	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	start_codon	9302838	9302840	.	+	0	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	CDS	9302838	9303229	0.87	+	0	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	exon	9302838	9303229	.	+	.	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	intron	9303230	9303297	.	+	.	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	CDS	9303298	9303544	1	+	1	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	exon	9303298	9303544	.	+	.	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	intron	9303545	9303615	.	+	.	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	CDS	9303616	9304011	0.89	+	0	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	exon	9303616	9304011	.	+	.	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	intron	9304012	9304087	.	+	.	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	CDS	9304088	9304582	0.96	+	0	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	exon	9304088	9304582	.	+	.	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
Ledus.S4	AUGUSTUS	stop_codon	9304583	9304585	.	+	0	transcript_id "Ledus.S4G122500.t2"; gene_id "Ledus.S4G122500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8578.t1 is derived from g9608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	298598	304148	.	+	.	Ledus.S3G005500
Ledus.S3	AUGUSTUS	transcript	298677	304148	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	start_codon	298677	298679	.	+	0	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	298677	298682	0.98	+	0	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	298677	298682	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	298683	298928	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	298929	299085	1	+	0	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	298929	299085	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	299086	299181	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	299182	299244	0.98	+	2	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	299182	299244	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	299245	299365	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	299366	299541	1	+	2	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	299366	299541	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	299542	299748	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	299749	300912	1	+	0	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	299749	300912	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	300913	300992	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	300993	301332	0.83	+	0	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	300993	301332	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	301333	301541	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	301542	301774	1	+	2	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	301542	301774	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	301775	301864	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	301865	302120	0.89	+	0	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	301865	302120	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	302121	302241	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	302242	302261	0.89	+	2	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	302242	302261	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	302262	302409	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	302410	302425	1	+	0	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	302410	302425	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	302426	302546	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	302547	302580	0.99	+	2	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	302547	302580	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	302581	302675	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	302676	303001	0.56	+	1	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	302676	303001	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	303002	303115	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	303116	303129	0.64	+	2	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	303116	303129	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	303130	303219	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	303220	303322	0.95	+	0	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	303220	303322	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	303323	303438	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	303439	304148	0.99	+	2	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	303439	304148	.	+	.	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	stop_codon	304149	304151	.	+	0	transcript_id "Ledus.S3G005500.t1"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	transcript	298598	304148	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	start_codon	298598	298600	.	+	0	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	298598	298607	0.4	+	0	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	298598	298607	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	298608	298743	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	298744	298754	0.94	+	2	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	298744	298754	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	298755	298928	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	298929	299085	1	+	0	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	298929	299085	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	299086	299181	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	299182	299244	0.97	+	2	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	299182	299244	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	299245	299365	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	299366	299410	0.87	+	2	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	299366	299410	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	299411	299495	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	299496	299551	0.93	+	2	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	299496	299551	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	299552	299748	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	299749	300912	0.93	+	0	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	299749	300912	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	300913	300992	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	300993	301332	0.82	+	0	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	300993	301332	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	301333	301541	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	301542	301774	1	+	2	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	301542	301774	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	301775	301864	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	301865	302120	0.86	+	0	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	301865	302120	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	302121	302241	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	302242	302261	0.87	+	2	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	302242	302261	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	302262	302409	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	302410	302425	0.98	+	0	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	302410	302425	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	302426	302546	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	302547	302580	0.96	+	2	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	302547	302580	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	302581	302675	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	302676	303001	0.64	+	1	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	302676	303001	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	303002	303115	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	303116	303129	0.73	+	2	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	303116	303129	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	303130	303219	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	303220	303322	0.95	+	0	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	303220	303322	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	303323	303438	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	303439	304148	0.97	+	2	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	303439	304148	.	+	.	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	stop_codon	304149	304151	.	+	0	transcript_id "Ledus.S3G005500.t2"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	transcript	298598	304148	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	start_codon	298598	298600	.	+	0	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	298598	298607	0.5	+	0	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	298598	298607	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	298608	298743	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	298744	298754	0.89	+	2	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	298744	298754	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	298755	298928	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	298929	299085	1	+	0	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	298929	299085	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	299086	299181	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	299182	299244	0.96	+	2	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	299182	299244	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	299245	299365	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	299366	299541	1	+	2	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	299366	299541	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	299542	299748	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	299749	300912	1	+	0	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	299749	300912	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	300913	300992	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	300993	301332	0.84	+	0	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	300993	301332	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	301333	301541	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	301542	301774	0.98	+	2	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	301542	301774	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	301775	301864	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	301865	302120	0.83	+	0	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	301865	302120	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	302121	302241	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	302242	302261	0.83	+	2	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	302242	302261	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	302262	302409	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	302410	302425	0.98	+	0	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	302410	302425	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	302426	302546	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	302547	302580	0.93	+	2	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	302547	302580	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	302581	302675	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	302676	303001	0.58	+	1	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	302676	303001	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	303002	303115	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	303116	303129	0.64	+	2	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	303116	303129	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	303130	303219	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	303220	303322	0.95	+	0	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	303220	303322	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	intron	303323	303438	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	CDS	303439	304148	0.99	+	2	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	exon	303439	304148	.	+	.	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
Ledus.S3	AUGUSTUS	stop_codon	304149	304151	.	+	0	transcript_id "Ledus.S3G005500.t3"; gene_id "Ledus.S3G005500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg13158.t1 is derived from g6968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7638819	7639866	.	+	.	Ledus.S6G022000
Ledus.S6	AUGUSTUS	transcript	7638819	7639866	.	+	.	transcript_id "Ledus.S6G022000.t1"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	start_codon	7638819	7638821	.	+	0	transcript_id "Ledus.S6G022000.t1"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	CDS	7638819	7638871	0.83	+	0	transcript_id "Ledus.S6G022000.t1"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	exon	7638819	7638871	.	+	.	transcript_id "Ledus.S6G022000.t1"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	intron	7638872	7639347	.	+	.	transcript_id "Ledus.S6G022000.t1"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	CDS	7639348	7639484	0.96	+	1	transcript_id "Ledus.S6G022000.t1"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	exon	7639348	7639484	.	+	.	transcript_id "Ledus.S6G022000.t1"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	intron	7639485	7639576	.	+	.	transcript_id "Ledus.S6G022000.t1"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	CDS	7639577	7639866	0.95	+	2	transcript_id "Ledus.S6G022000.t1"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	exon	7639577	7639866	.	+	.	transcript_id "Ledus.S6G022000.t1"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	stop_codon	7639867	7639869	.	+	0	transcript_id "Ledus.S6G022000.t1"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	transcript	7638823	7639866	.	+	.	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	start_codon	7638823	7638825	.	+	0	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	CDS	7638823	7638871	0.48	+	0	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	exon	7638823	7638871	.	+	.	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	intron	7638872	7638961	.	+	.	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	CDS	7638962	7638986	0.76	+	2	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	exon	7638962	7638986	.	+	.	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	intron	7638987	7639311	.	+	.	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	CDS	7639312	7639484	0.96	+	1	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	exon	7639312	7639484	.	+	.	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	intron	7639485	7639576	.	+	.	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	CDS	7639577	7639866	0.99	+	2	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	exon	7639577	7639866	.	+	.	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
Ledus.S6	AUGUSTUS	stop_codon	7639867	7639869	.	+	0	transcript_id "Ledus.S6G022000.t2"; gene_id "Ledus.S6G022000"
# This transcript jg7897.t2 is derived from g12568.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7898.t1 is derived from g12569.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7724649	7726411	.	+	.	Ledus.S5G067600
Ledus.S5	AUGUSTUS	transcript	7724649	7726411	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	start_codon	7724649	7724651	.	+	0	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7724649	7724822	1	+	0	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7724649	7724822	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	intron	7724823	7724947	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7724948	7725054	1	+	0	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7724948	7725054	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	intron	7725055	7725128	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7725129	7725230	1	+	1	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7725129	7725230	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	intron	7725231	7725329	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7725330	7725525	1	+	1	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7725330	7725525	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	intron	7725526	7725706	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7725707	7725835	1	+	0	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7725707	7725835	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	intron	7725836	7726008	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7726009	7726203	1	+	0	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7726009	7726203	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	intron	7726204	7726288	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7726289	7726411	0.97	+	0	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7726289	7726411	.	+	.	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	stop_codon	7726412	7726414	.	+	0	transcript_id "Ledus.S5G067600.t1"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	transcript	7724649	7726411	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	start_codon	7724649	7724651	.	+	0	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7724649	7724822	1	+	0	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7724649	7724822	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	intron	7724823	7724947	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7724948	7725054	1	+	0	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7724948	7725054	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	intron	7725055	7725128	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7725129	7725230	1	+	1	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7725129	7725230	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	intron	7725231	7725329	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7725330	7725525	1	+	1	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7725330	7725525	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	intron	7725526	7725706	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7725707	7725835	1	+	0	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7725707	7725835	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	intron	7725836	7726020	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7726021	7726203	1	+	0	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7726021	7726203	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	intron	7726204	7726288	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	CDS	7726289	7726411	0.92	+	0	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	exon	7726289	7726411	.	+	.	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
Ledus.S5	AUGUSTUS	stop_codon	7726412	7726414	.	+	0	transcript_id "Ledus.S5G067600.t2"; gene_id "Ledus.S5G067600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3356.t1 is derived from g791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7804498	7805966	.	+	.	Ledus.S1G077700
Ledus.S1	AUGUSTUS	transcript	7804498	7805966	.	+	.	transcript_id "Ledus.S1G077700.t1"; gene_id "Ledus.S1G077700"
Ledus.S1	AUGUSTUS	start_codon	7804498	7804500	.	+	0	transcript_id "Ledus.S1G077700.t1"; gene_id "Ledus.S1G077700"
Ledus.S1	AUGUSTUS	CDS	7804498	7804581	0.33	+	0	transcript_id "Ledus.S1G077700.t1"; gene_id "Ledus.S1G077700"
Ledus.S1	AUGUSTUS	exon	7804498	7804581	.	+	.	transcript_id "Ledus.S1G077700.t1"; gene_id "Ledus.S1G077700"
Ledus.S1	AUGUSTUS	intron	7804582	7804678	.	+	.	transcript_id "Ledus.S1G077700.t1"; gene_id "Ledus.S1G077700"
Ledus.S1	AUGUSTUS	CDS	7804679	7804706	0.74	+	0	transcript_id "Ledus.S1G077700.t1"; gene_id "Ledus.S1G077700"
Ledus.S1	AUGUSTUS	exon	7804679	7804706	.	+	.	transcript_id "Ledus.S1G077700.t1"; gene_id "Ledus.S1G077700"
Ledus.S1	AUGUSTUS	intron	7804707	7804773	.	+	.	transcript_id "Ledus.S1G077700.t1"; gene_id "Ledus.S1G077700"
Ledus.S1	AUGUSTUS	CDS	7804774	7805966	0.49	+	2	transcript_id "Ledus.S1G077700.t1"; gene_id "Ledus.S1G077700"
Ledus.S1	AUGUSTUS	exon	7804774	7805966	.	+	.	transcript_id "Ledus.S1G077700.t1"; gene_id "Ledus.S1G077700"
Ledus.S1	AUGUSTUS	stop_codon	7805967	7805969	.	+	0	transcript_id "Ledus.S1G077700.t1"; gene_id "Ledus.S1G077700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10044.t1 is derived from g11074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12163860	12166604	.	+	.	Ledus.S3G152100
Ledus.S3	AUGUSTUS	transcript	12163860	12166604	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	start_codon	12163860	12163862	.	+	0	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12163860	12163869	0.98	+	0	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12163860	12163869	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	intron	12163870	12163943	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12163944	12164066	1	+	2	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12163944	12164066	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	intron	12164067	12164175	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12164176	12164209	1	+	2	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12164176	12164209	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	intron	12164210	12164294	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12164295	12164365	1	+	1	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12164295	12164365	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	intron	12164366	12164461	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12164462	12164673	1	+	2	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12164462	12164673	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	intron	12164674	12164745	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12164746	12164877	1	+	0	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12164746	12164877	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	intron	12164878	12164953	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12164954	12165020	1	+	0	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12164954	12165020	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	intron	12165021	12165097	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12165098	12165226	0.47	+	2	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12165098	12165226	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	intron	12165227	12165472	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12165473	12165728	0.32	+	2	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12165473	12165728	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	intron	12165729	12165794	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12165795	12165873	1	+	1	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12165795	12165873	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	intron	12165874	12165960	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12165961	12166155	1	+	0	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12165961	12166155	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	intron	12166156	12166233	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12166234	12166407	1	+	0	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12166234	12166407	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	intron	12166408	12166487	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	CDS	12166488	12166604	1	+	0	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	exon	12166488	12166604	.	+	.	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
Ledus.S3	AUGUSTUS	stop_codon	12166605	12166607	.	+	0	transcript_id "Ledus.S3G152100.t1"; gene_id "Ledus.S3G152100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4279.t1 is derived from g1715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15926968	15928305	.	+	.	Ledus.S1G170000
Ledus.S1	AUGUSTUS	transcript	15926968	15928305	.	+	.	transcript_id "Ledus.S1G170000.t1"; gene_id "Ledus.S1G170000"
Ledus.S1	AUGUSTUS	start_codon	15926968	15926970	.	+	0	transcript_id "Ledus.S1G170000.t1"; gene_id "Ledus.S1G170000"
Ledus.S1	AUGUSTUS	CDS	15926968	15928305	0.97	+	0	transcript_id "Ledus.S1G170000.t1"; gene_id "Ledus.S1G170000"
Ledus.S1	AUGUSTUS	exon	15926968	15928305	.	+	.	transcript_id "Ledus.S1G170000.t1"; gene_id "Ledus.S1G170000"
Ledus.S1	AUGUSTUS	stop_codon	15928306	15928308	.	+	0	transcript_id "Ledus.S1G170000.t1"; gene_id "Ledus.S1G170000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10730.t1 is derived from g11760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17399418	17400326	.	-	.	Ledus.S3G220700
Ledus.S3	AUGUSTUS	transcript	17399418	17400326	.	-	.	transcript_id "Ledus.S3G220700.t1"; gene_id "Ledus.S3G220700"
Ledus.S3	AUGUSTUS	stop_codon	17399415	17399417	.	-	0	transcript_id "Ledus.S3G220700.t1"; gene_id "Ledus.S3G220700"
Ledus.S3	AUGUSTUS	CDS	17399418	17400143	1	-	0	transcript_id "Ledus.S3G220700.t1"; gene_id "Ledus.S3G220700"
Ledus.S3	AUGUSTUS	exon	17399418	17400143	.	-	.	transcript_id "Ledus.S3G220700.t1"; gene_id "Ledus.S3G220700"
Ledus.S3	AUGUSTUS	intron	17400144	17400227	.	-	.	transcript_id "Ledus.S3G220700.t1"; gene_id "Ledus.S3G220700"
Ledus.S3	AUGUSTUS	CDS	17400228	17400326	0.92	-	0	transcript_id "Ledus.S3G220700.t1"; gene_id "Ledus.S3G220700"
Ledus.S3	AUGUSTUS	exon	17400228	17400326	.	-	.	transcript_id "Ledus.S3G220700.t1"; gene_id "Ledus.S3G220700"
Ledus.S3	AUGUSTUS	start_codon	17400324	17400326	.	-	0	transcript_id "Ledus.S3G220700.t1"; gene_id "Ledus.S3G220700"
# This transcript jg4383.t2 is derived from g1819.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4384.t1 is derived from g1820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16745728	16747194	.	+	.	Ledus.S1G180500
Ledus.S1	AUGUSTUS	transcript	16745728	16747194	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	start_codon	16745728	16745730	.	+	0	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	CDS	16745728	16745912	0.76	+	0	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	exon	16745728	16745912	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	intron	16745913	16746061	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	CDS	16746062	16746182	1	+	1	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	exon	16746062	16746182	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	intron	16746183	16746258	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	CDS	16746259	16746396	1	+	0	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	exon	16746259	16746396	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	intron	16746397	16746493	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	CDS	16746494	16746610	1	+	0	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	exon	16746494	16746610	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	intron	16746611	16746718	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	CDS	16746719	16746787	1	+	0	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	exon	16746719	16746787	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	intron	16746788	16746861	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	CDS	16746862	16746957	1	+	0	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	exon	16746862	16746957	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	intron	16746958	16747056	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	CDS	16747057	16747194	0.85	+	0	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	exon	16747057	16747194	.	+	.	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
Ledus.S1	AUGUSTUS	stop_codon	16747195	16747197	.	+	0	transcript_id "Ledus.S1G180500.t1"; gene_id "Ledus.S1G180500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1521.t1 is derived from g8382.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10753231	10754322	.	-	.	Ledus.S2G140300
Ledus.S2	AUGUSTUS	transcript	10753231	10754322	.	-	.	transcript_id "Ledus.S2G140300.t1"; gene_id "Ledus.S2G140300"
Ledus.S2	AUGUSTUS	stop_codon	10753228	10753230	.	-	0	transcript_id "Ledus.S2G140300.t1"; gene_id "Ledus.S2G140300"
Ledus.S2	AUGUSTUS	CDS	10753231	10754322	0.96	-	0	transcript_id "Ledus.S2G140300.t1"; gene_id "Ledus.S2G140300"
Ledus.S2	AUGUSTUS	exon	10753231	10754322	.	-	.	transcript_id "Ledus.S2G140300.t1"; gene_id "Ledus.S2G140300"
Ledus.S2	AUGUSTUS	start_codon	10754320	10754322	.	-	0	transcript_id "Ledus.S2G140300.t1"; gene_id "Ledus.S2G140300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12522.t1 is derived from g6143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12715718	12722304	.	+	.	Ledus.S4G167800
Ledus.S4	AUGUSTUS	transcript	12715718	12722304	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	start_codon	12715718	12715720	.	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12715718	12715744	0.82	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12715718	12715744	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12715745	12715852	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12715853	12715916	0.8	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12715853	12715916	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12715917	12716151	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12716152	12716384	0.68	+	2	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12716152	12716384	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12716385	12716551	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12716552	12716644	1	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12716552	12716644	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12716645	12716795	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12716796	12717013	1	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12716796	12717013	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12717014	12717148	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12717149	12717221	1	+	1	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12717149	12717221	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12717222	12717312	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12717313	12717485	1	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12717313	12717485	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12717486	12717601	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12717602	12717773	0.84	+	1	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12717602	12717773	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12717774	12717865	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12717866	12717970	1	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12717866	12717970	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12717971	12718057	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12718058	12718168	1	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12718058	12718168	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12718169	12718383	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12718384	12718470	1	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12718384	12718470	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12718471	12718630	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12718631	12718813	1	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12718631	12718813	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12718814	12718907	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12718908	12718958	1	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12718908	12718958	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12718959	12719054	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12719055	12719180	0.96	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12719055	12719180	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12719181	12719294	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12719295	12719374	1	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12719295	12719374	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12719375	12719469	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12719470	12719578	1	+	1	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12719470	12719578	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12719579	12719686	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12719687	12719815	1	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12719687	12719815	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12719816	12719917	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12719918	12719983	0.86	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12719918	12719983	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12719984	12720093	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12720094	12720165	0.95	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12720094	12720165	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12720166	12720282	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12720283	12720443	1	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12720283	12720443	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12720444	12720575	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12720576	12720687	1	+	1	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12720576	12720687	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12720688	12720778	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12720779	12720895	0.78	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12720779	12720895	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12720896	12721012	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12721013	12721103	1	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12721013	12721103	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	intron	12721104	12721309	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	CDS	12721310	12722304	1	+	2	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	exon	12721310	12722304	.	+	.	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
Ledus.S4	AUGUSTUS	stop_codon	12722305	12722307	.	+	0	transcript_id "Ledus.S4G167800.t1"; gene_id "Ledus.S4G167800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9425.t1 is derived from g10455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6672343	6672664	.	+	.	Ledus.S3G090200
Ledus.S3	AUGUSTUS	transcript	6672343	6672664	.	+	.	transcript_id "Ledus.S3G090200.t1"; gene_id "Ledus.S3G090200"
Ledus.S3	AUGUSTUS	start_codon	6672343	6672345	.	+	0	transcript_id "Ledus.S3G090200.t1"; gene_id "Ledus.S3G090200"
Ledus.S3	AUGUSTUS	CDS	6672343	6672531	0.96	+	0	transcript_id "Ledus.S3G090200.t1"; gene_id "Ledus.S3G090200"
Ledus.S3	AUGUSTUS	exon	6672343	6672531	.	+	.	transcript_id "Ledus.S3G090200.t1"; gene_id "Ledus.S3G090200"
Ledus.S3	AUGUSTUS	intron	6672532	6672610	.	+	.	transcript_id "Ledus.S3G090200.t1"; gene_id "Ledus.S3G090200"
Ledus.S3	AUGUSTUS	CDS	6672611	6672664	1	+	0	transcript_id "Ledus.S3G090200.t1"; gene_id "Ledus.S3G090200"
Ledus.S3	AUGUSTUS	exon	6672611	6672664	.	+	.	transcript_id "Ledus.S3G090200.t1"; gene_id "Ledus.S3G090200"
Ledus.S3	AUGUSTUS	stop_codon	6672665	6672667	.	+	0	transcript_id "Ledus.S3G090200.t1"; gene_id "Ledus.S3G090200"
# This transcript jg11387.t2 is derived from g5005.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11388.t1 is derived from g5006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3958146	3959588	.	+	.	Ledus.S4G054400
Ledus.S4	AUGUSTUS	transcript	3958146	3959588	.	+	.	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	start_codon	3958146	3958148	.	+	0	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	CDS	3958146	3958685	0.66	+	0	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	exon	3958146	3958685	.	+	.	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	intron	3958686	3958782	.	+	.	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	CDS	3958783	3958989	1	+	0	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	exon	3958783	3958989	.	+	.	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	intron	3958990	3959073	.	+	.	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	CDS	3959074	3959265	1	+	0	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	exon	3959074	3959265	.	+	.	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	intron	3959266	3959354	.	+	.	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	CDS	3959355	3959588	0.81	+	0	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	exon	3959355	3959588	.	+	.	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
Ledus.S4	AUGUSTUS	stop_codon	3959589	3959591	.	+	0	transcript_id "Ledus.S4G054400.t1"; gene_id "Ledus.S4G054400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10916.t1 is derived from g4534.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	552267	552572	.	-	.	Ledus.S4G007200
Ledus.S4	AUGUSTUS	transcript	552267	552572	.	-	.	transcript_id "Ledus.S4G007200.t1"; gene_id "Ledus.S4G007200"
Ledus.S4	AUGUSTUS	stop_codon	552264	552266	.	-	0	transcript_id "Ledus.S4G007200.t1"; gene_id "Ledus.S4G007200"
Ledus.S4	AUGUSTUS	CDS	552267	552572	0.4	-	0	transcript_id "Ledus.S4G007200.t1"; gene_id "Ledus.S4G007200"
Ledus.S4	AUGUSTUS	exon	552267	552572	.	-	.	transcript_id "Ledus.S4G007200.t1"; gene_id "Ledus.S4G007200"
Ledus.S4	AUGUSTUS	start_codon	552570	552572	.	-	0	transcript_id "Ledus.S4G007200.t1"; gene_id "Ledus.S4G007200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10491.t1 is derived from g11521.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15597428	15600572	.	+	.	Ledus.S3G196800
Ledus.S3	AUGUSTUS	transcript	15597428	15600572	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	start_codon	15597428	15597430	.	+	0	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15597428	15597436	1	+	0	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15597428	15597436	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15597437	15597670	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15597671	15597875	1	+	0	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15597671	15597875	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15597876	15598027	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15598028	15598308	1	+	2	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15598028	15598308	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15598309	15598402	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15598403	15598492	1	+	0	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15598403	15598492	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15598493	15598881	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15598882	15599219	0.97	+	0	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15598882	15599219	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15599220	15599311	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15599312	15599411	0.71	+	1	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15599312	15599411	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15599412	15599532	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15599533	15599572	0.87	+	0	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15599533	15599572	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15599573	15599740	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15599741	15599784	0.91	+	2	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15599741	15599784	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15599785	15599924	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15599925	15599946	0.9	+	0	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15599925	15599946	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15599947	15600176	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15600177	15600236	0.9	+	2	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15600177	15600236	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15600237	15600326	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15600327	15600406	0.96	+	2	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15600327	15600406	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15600407	15600503	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15600504	15600572	0.97	+	0	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15600504	15600572	.	+	.	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	stop_codon	15600573	15600575	.	+	0	transcript_id "Ledus.S3G196800.t1"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	transcript	15597428	15600572	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	start_codon	15597428	15597430	.	+	0	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15597428	15597436	1	+	0	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15597428	15597436	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15597437	15597670	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15597671	15597902	0.7	+	0	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15597671	15597902	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15597903	15598027	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15598028	15598308	1	+	2	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15598028	15598308	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15598309	15598402	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15598403	15598492	1	+	0	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15598403	15598492	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15598493	15598881	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15598882	15599219	0.96	+	0	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15598882	15599219	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15599220	15599311	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15599312	15599411	0.55	+	1	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15599312	15599411	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15599412	15599532	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15599533	15599572	0.82	+	0	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15599533	15599572	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15599573	15599740	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15599741	15599784	0.83	+	2	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15599741	15599784	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15599785	15599924	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15599925	15599946	0.8	+	0	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15599925	15599946	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15599947	15600176	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15600177	15600236	0.82	+	2	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15600177	15600236	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15600237	15600326	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15600327	15600406	0.93	+	2	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15600327	15600406	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	intron	15600407	15600503	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	CDS	15600504	15600572	0.93	+	0	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	exon	15600504	15600572	.	+	.	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
Ledus.S3	AUGUSTUS	stop_codon	15600573	15600575	.	+	0	transcript_id "Ledus.S3G196800.t2"; gene_id "Ledus.S3G196800"
# This transcript jg1166.t2 is derived from g8027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1167.t1 is derived from g8028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8043660	8045685	.	+	.	Ledus.S2G104900
Ledus.S2	AUGUSTUS	transcript	8043660	8045685	.	+	.	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	start_codon	8043660	8043662	.	+	0	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	CDS	8043660	8043723	0.62	+	0	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	exon	8043660	8043723	.	+	.	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	intron	8043724	8044004	.	+	.	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	CDS	8044005	8044107	0.76	+	2	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	exon	8044005	8044107	.	+	.	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	intron	8044108	8045316	.	+	.	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	CDS	8045317	8045362	1	+	1	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	exon	8045317	8045362	.	+	.	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	intron	8045363	8045437	.	+	.	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	CDS	8045438	8045446	1	+	0	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	exon	8045438	8045446	.	+	.	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	intron	8045447	8045646	.	+	.	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	CDS	8045647	8045685	1	+	0	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	exon	8045647	8045685	.	+	.	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
Ledus.S2	AUGUSTUS	stop_codon	8045686	8045688	.	+	0	transcript_id "Ledus.S2G104900.t1"; gene_id "Ledus.S2G104900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12073.t1 is derived from g5692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9343631	9346381	.	-	.	Ledus.S4G122900
Ledus.S4	AUGUSTUS	transcript	9343631	9345952	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	stop_codon	9343628	9343630	.	-	0	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9343631	9343675	0.47	-	0	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9343631	9343675	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9343676	9343795	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9343796	9343924	0.78	-	0	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9343796	9343924	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9343925	9344021	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344022	9344069	1	-	0	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344022	9344069	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9344070	9344173	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344174	9344236	0.99	-	0	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344174	9344236	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9344237	9344366	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344367	9344405	1	-	0	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344367	9344405	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9344406	9344496	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344497	9344582	1	-	2	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344497	9344582	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9344583	9344671	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344672	9344730	1	-	1	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344672	9344730	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9344731	9344825	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344826	9344876	0.95	-	1	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344826	9344876	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9344877	9344992	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344993	9345120	1	-	0	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344993	9345120	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9345121	9345362	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9345363	9345421	1	-	2	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9345363	9345421	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9345422	9345551	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9345552	9345615	1	-	0	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9345552	9345615	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9345616	9345718	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9345719	9345772	1	-	0	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9345719	9345772	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9345773	9345895	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9345896	9345952	0.92	-	0	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9345896	9345952	.	-	.	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	start_codon	9345950	9345952	.	-	0	transcript_id "Ledus.S4G122900.t1"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	transcript	9343631	9346381	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	stop_codon	9343628	9343630	.	-	0	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9343631	9343675	0.51	-	0	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9343631	9343675	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9343676	9343795	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9343796	9343924	0.78	-	0	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9343796	9343924	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9343925	9344021	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344022	9344069	0.98	-	0	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344022	9344069	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9344070	9344173	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344174	9344236	0.98	-	0	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344174	9344236	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9344237	9344366	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344367	9344405	1	-	0	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344367	9344405	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9344406	9344496	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344497	9344582	1	-	2	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344497	9344582	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9344583	9344671	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344672	9344730	1	-	1	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344672	9344730	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9344731	9344825	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344826	9344876	0.97	-	1	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344826	9344876	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9344877	9344992	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9344993	9345120	0.99	-	0	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9344993	9345120	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9345121	9345362	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9345363	9345421	1	-	2	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9345363	9345421	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9345422	9345551	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9345552	9345615	1	-	0	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9345552	9345615	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9345616	9345718	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9345719	9345772	1	-	0	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9345719	9345772	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9345773	9345974	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9345975	9346047	0.99	-	1	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9345975	9346047	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9346048	9346157	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9346158	9346271	0.59	-	1	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9346158	9346271	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	intron	9346272	9346337	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	CDS	9346338	9346381	0.94	-	0	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	exon	9346338	9346381	.	-	.	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
Ledus.S4	AUGUSTUS	start_codon	9346379	9346381	.	-	0	transcript_id "Ledus.S4G122900.t2"; gene_id "Ledus.S4G122900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4806.t1 is derived from g2244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19882546	19882818	.	-	.	Ledus.S1G222700
Ledus.S1	AUGUSTUS	transcript	19882546	19882818	.	-	.	transcript_id "Ledus.S1G222700.t1"; gene_id "Ledus.S1G222700"
Ledus.S1	AUGUSTUS	stop_codon	19882543	19882545	.	-	0	transcript_id "Ledus.S1G222700.t1"; gene_id "Ledus.S1G222700"
Ledus.S1	AUGUSTUS	CDS	19882546	19882818	0.62	-	0	transcript_id "Ledus.S1G222700.t1"; gene_id "Ledus.S1G222700"
Ledus.S1	AUGUSTUS	exon	19882546	19882818	.	-	.	transcript_id "Ledus.S1G222700.t1"; gene_id "Ledus.S1G222700"
Ledus.S1	AUGUSTUS	start_codon	19882816	19882818	.	-	0	transcript_id "Ledus.S1G222700.t1"; gene_id "Ledus.S1G222700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6508.t1 is derived from g3951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31768881	31770166	.	-	.	Ledus.S1G392900
Ledus.S1	AUGUSTUS	transcript	31768881	31770166	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	stop_codon	31768878	31768880	.	-	0	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	CDS	31768881	31769011	1	-	2	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	exon	31768881	31769011	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	intron	31769012	31769092	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	CDS	31769093	31769172	1	-	1	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	exon	31769093	31769172	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	intron	31769173	31769329	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	CDS	31769330	31769349	1	-	0	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	exon	31769330	31769349	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	intron	31769350	31769442	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	CDS	31769443	31769521	1	-	1	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	exon	31769443	31769521	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	intron	31769522	31769600	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	CDS	31769601	31769692	1	-	0	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	exon	31769601	31769692	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	intron	31769693	31769778	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	CDS	31769779	31769845	1	-	1	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	exon	31769779	31769845	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	intron	31769846	31769927	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	CDS	31769928	31770166	0.71	-	0	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	exon	31769928	31770166	.	-	.	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
Ledus.S1	AUGUSTUS	start_codon	31770164	31770166	.	-	0	transcript_id "Ledus.S1G392900.t1"; gene_id "Ledus.S1G392900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9901.t1 is derived from g10931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11031681	11034930	.	-	.	Ledus.S3G137800
Ledus.S3	AUGUSTUS	transcript	11031681	11034930	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	stop_codon	11031678	11031680	.	-	0	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	CDS	11031681	11031920	1	-	0	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	exon	11031681	11031920	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	intron	11031921	11032119	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	CDS	11032120	11032254	1	-	0	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	exon	11032120	11032254	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	intron	11032255	11032544	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	CDS	11032545	11032624	1	-	2	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	exon	11032545	11032624	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	intron	11032625	11032727	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	CDS	11032728	11032857	1	-	0	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	exon	11032728	11032857	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	intron	11032858	11033136	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	CDS	11033137	11033275	1	-	1	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	exon	11033137	11033275	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	intron	11033276	11033367	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	CDS	11033368	11033486	1	-	0	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	exon	11033368	11033486	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	intron	11033487	11033788	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	CDS	11033789	11033926	1	-	0	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	exon	11033789	11033926	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	intron	11033927	11034020	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	CDS	11034021	11034209	1	-	0	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	exon	11034021	11034209	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	intron	11034210	11034292	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	CDS	11034293	11034430	1	-	0	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	exon	11034293	11034430	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	intron	11034431	11034561	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	CDS	11034562	11034930	1	-	0	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	exon	11034562	11034930	.	-	.	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
Ledus.S3	AUGUSTUS	start_codon	11034928	11034930	.	-	0	transcript_id "Ledus.S3G137800.t1"; gene_id "Ledus.S3G137800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5303.t1 is derived from g2742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23195021	23195515	.	+	.	Ledus.S1G272400
Ledus.S1	AUGUSTUS	transcript	23195021	23195515	.	+	.	transcript_id "Ledus.S1G272400.t1"; gene_id "Ledus.S1G272400"
Ledus.S1	AUGUSTUS	start_codon	23195021	23195023	.	+	0	transcript_id "Ledus.S1G272400.t1"; gene_id "Ledus.S1G272400"
Ledus.S1	AUGUSTUS	CDS	23195021	23195515	0.85	+	0	transcript_id "Ledus.S1G272400.t1"; gene_id "Ledus.S1G272400"
Ledus.S1	AUGUSTUS	exon	23195021	23195515	.	+	.	transcript_id "Ledus.S1G272400.t1"; gene_id "Ledus.S1G272400"
Ledus.S1	AUGUSTUS	stop_codon	23195516	23195518	.	+	0	transcript_id "Ledus.S1G272400.t1"; gene_id "Ledus.S1G272400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6145.t1 is derived from g3588.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29258639	29264222	.	+	.	Ledus.S1G356600
Ledus.S1	AUGUSTUS	transcript	29258639	29264222	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	start_codon	29258639	29258641	.	+	0	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29258639	29258743	0.73	+	0	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29258639	29258743	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29258744	29259275	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29259276	29259348	1	+	0	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29259276	29259348	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29259349	29259461	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29259462	29259571	0.97	+	2	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29259462	29259571	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29259572	29259678	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29259679	29259725	0.99	+	0	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29259679	29259725	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29259726	29259829	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29259830	29259927	0.95	+	1	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29259830	29259927	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29259928	29260127	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29260128	29260462	1	+	2	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29260128	29260462	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29260463	29260598	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29260599	29260751	0.98	+	0	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29260599	29260751	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29260752	29261738	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29261739	29261994	0.99	+	0	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29261739	29261994	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29261995	29262177	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29262178	29262326	0.99	+	2	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29262178	29262326	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29262327	29262437	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29262438	29262503	0.99	+	0	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29262438	29262503	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29262504	29262709	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29262710	29262829	1	+	0	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29262710	29262829	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29262830	29262965	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29262966	29263042	1	+	0	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29262966	29263042	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29263043	29263183	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29263184	29263303	1	+	1	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29263184	29263303	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29263304	29263390	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29263391	29263474	1	+	1	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29263391	29263474	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29263475	29263551	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29263552	29263687	1	+	1	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29263552	29263687	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29263688	29263783	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29263784	29264065	0.98	+	0	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29263784	29264065	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29264066	29264171	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29264172	29264222	1	+	0	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29264172	29264222	.	+	.	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	stop_codon	29264223	29264225	.	+	0	transcript_id "Ledus.S1G356600.t1"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	transcript	29258639	29264222	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	start_codon	29258639	29258641	.	+	0	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29258639	29258743	0.69	+	0	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29258639	29258743	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29258744	29259275	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29259276	29259348	1	+	0	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29259276	29259348	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29259349	29259461	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29259462	29259571	0.97	+	2	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29259462	29259571	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29259572	29259678	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29259679	29259725	1	+	0	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29259679	29259725	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29259726	29259829	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29259830	29259927	0.99	+	1	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29259830	29259927	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29259928	29260127	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29260128	29260462	1	+	2	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29260128	29260462	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29260463	29260598	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29260599	29260751	1	+	0	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29260599	29260751	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29260752	29261738	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29261739	29261994	0.96	+	0	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29261739	29261994	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29261995	29262102	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29262103	29262326	0.93	+	2	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29262103	29262326	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29262327	29262437	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29262438	29262503	1	+	0	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29262438	29262503	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29262504	29262709	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29262710	29262829	1	+	0	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29262710	29262829	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29262830	29262965	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29262966	29263042	1	+	0	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29262966	29263042	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29263043	29263183	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29263184	29263303	1	+	1	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29263184	29263303	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29263304	29263390	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29263391	29263474	1	+	1	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29263391	29263474	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29263475	29263551	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29263552	29263687	1	+	1	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29263552	29263687	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29263688	29263783	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29263784	29264065	0.96	+	0	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29263784	29264065	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	intron	29264066	29264171	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	CDS	29264172	29264222	0.98	+	0	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	exon	29264172	29264222	.	+	.	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
Ledus.S1	AUGUSTUS	stop_codon	29264223	29264225	.	+	0	transcript_id "Ledus.S1G356600.t2"; gene_id "Ledus.S1G356600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3137.t1 is derived from g572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6225553	6226695	.	+	.	Ledus.S1G055800
Ledus.S1	AUGUSTUS	transcript	6225553	6226695	.	+	.	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	start_codon	6225553	6225555	.	+	0	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	CDS	6225553	6225918	0.94	+	0	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	exon	6225553	6225918	.	+	.	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	intron	6225919	6226093	.	+	.	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	CDS	6226094	6226177	1	+	0	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	exon	6226094	6226177	.	+	.	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	intron	6226178	6226245	.	+	.	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	CDS	6226246	6226335	0.97	+	0	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	exon	6226246	6226335	.	+	.	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	intron	6226336	6226440	.	+	.	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	CDS	6226441	6226695	0.99	+	0	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	exon	6226441	6226695	.	+	.	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
Ledus.S1	AUGUSTUS	stop_codon	6226696	6226698	.	+	0	transcript_id "Ledus.S1G055800.t1"; gene_id "Ledus.S1G055800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2899.t1 is derived from g334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4460560	4468708	.	+	.	Ledus.S1G032000
Ledus.S1	AUGUSTUS	transcript	4460560	4468708	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	start_codon	4460560	4460562	.	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4460560	4460637	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4460560	4460637	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4460638	4460714	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4460715	4460842	0.84	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4460715	4460842	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4460843	4460957	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4460958	4461050	1	+	1	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4460958	4461050	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4461051	4461188	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4461189	4461267	1	+	1	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4461189	4461267	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4461268	4461356	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4461357	4461447	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4461357	4461447	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4461448	4461639	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4461640	4461692	1	+	2	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4461640	4461692	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4461693	4461774	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4461775	4461839	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4461775	4461839	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4461840	4462036	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4462037	4462142	1	+	1	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4462037	4462142	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4462143	4462264	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4462265	4462375	0.72	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4462265	4462375	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4462376	4462487	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4462488	4462547	0.99	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4462488	4462547	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4462548	4462721	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4462722	4462766	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4462722	4462766	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4462767	4462885	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4462886	4462936	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4462886	4462936	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4462937	4463117	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4463118	4463216	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4463118	4463216	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4463217	4463344	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4463345	4463404	0.99	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4463345	4463404	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4463405	4463509	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4463510	4463602	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4463510	4463602	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4463603	4463805	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4463806	4463907	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4463806	4463907	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4463908	4463997	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4463998	4464108	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4463998	4464108	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4464109	4464252	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4464253	4464369	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4464253	4464369	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4464370	4464576	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4464577	4464693	0.95	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4464577	4464693	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4464694	4464806	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4464807	4464887	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4464807	4464887	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4464888	4465072	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4465073	4465177	0.99	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4465073	4465177	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4465178	4465282	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4465283	4465363	0.99	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4465283	4465363	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4465364	4465456	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4465457	4465588	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4465457	4465588	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4465589	4465724	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4465725	4465769	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4465725	4465769	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4465770	4465883	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4465884	4465961	0.99	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4465884	4465961	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4465962	4466082	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4466083	4466222	0.99	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4466083	4466222	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4466223	4466306	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4466307	4466412	1	+	1	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4466307	4466412	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4466413	4466512	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4466513	4466637	0.81	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4466513	4466637	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4466638	4466745	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4466746	4466881	0.7	+	1	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4466746	4466881	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4466882	4467017	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4467018	4467148	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4467018	4467148	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4467149	4467243	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4467244	4467369	1	+	1	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4467244	4467369	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4467370	4467516	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4467517	4467572	1	+	1	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4467517	4467572	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4467573	4467714	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4467715	4467785	1	+	2	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4467715	4467785	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4467786	4467946	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4467947	4468031	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4467947	4468031	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4468032	4468182	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4468183	4468286	1	+	2	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4468183	4468286	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4468287	4468397	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4468398	4468526	0.99	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4468398	4468526	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	intron	4468527	4468660	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	CDS	4468661	4468708	1	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	exon	4468661	4468708	.	+	.	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
Ledus.S1	AUGUSTUS	stop_codon	4468709	4468711	.	+	0	transcript_id "Ledus.S1G032000.t1"; gene_id "Ledus.S1G032000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8460.t1 is derived from g13132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11808713	11809637	.	+	.	Ledus.S5G123800
Ledus.S5	AUGUSTUS	transcript	11808713	11809637	.	+	.	transcript_id "Ledus.S5G123800.t1"; gene_id "Ledus.S5G123800"
Ledus.S5	AUGUSTUS	start_codon	11808713	11808715	.	+	0	transcript_id "Ledus.S5G123800.t1"; gene_id "Ledus.S5G123800"
Ledus.S5	AUGUSTUS	CDS	11808713	11808917	0.9	+	0	transcript_id "Ledus.S5G123800.t1"; gene_id "Ledus.S5G123800"
Ledus.S5	AUGUSTUS	exon	11808713	11808917	.	+	.	transcript_id "Ledus.S5G123800.t1"; gene_id "Ledus.S5G123800"
Ledus.S5	AUGUSTUS	intron	11808918	11808996	.	+	.	transcript_id "Ledus.S5G123800.t1"; gene_id "Ledus.S5G123800"
Ledus.S5	AUGUSTUS	CDS	11808997	11809076	1	+	2	transcript_id "Ledus.S5G123800.t1"; gene_id "Ledus.S5G123800"
Ledus.S5	AUGUSTUS	exon	11808997	11809076	.	+	.	transcript_id "Ledus.S5G123800.t1"; gene_id "Ledus.S5G123800"
Ledus.S5	AUGUSTUS	intron	11809077	11809190	.	+	.	transcript_id "Ledus.S5G123800.t1"; gene_id "Ledus.S5G123800"
Ledus.S5	AUGUSTUS	CDS	11809191	11809637	0.97	+	0	transcript_id "Ledus.S5G123800.t1"; gene_id "Ledus.S5G123800"
Ledus.S5	AUGUSTUS	exon	11809191	11809637	.	+	.	transcript_id "Ledus.S5G123800.t1"; gene_id "Ledus.S5G123800"
Ledus.S5	AUGUSTUS	stop_codon	11809638	11809640	.	+	0	transcript_id "Ledus.S5G123800.t1"; gene_id "Ledus.S5G123800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5937.t1 is derived from g3380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27915897	27919425	.	+	.	Ledus.S1G335800
Ledus.S1	AUGUSTUS	transcript	27915897	27919425	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	start_codon	27915897	27915899	.	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27915897	27916136	0.53	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27915897	27916136	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27916137	27916231	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27916232	27916312	1	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27916232	27916312	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27916313	27916392	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27916393	27916466	1	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27916393	27916466	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27916467	27916561	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27916562	27916637	1	+	1	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27916562	27916637	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27916638	27916725	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27916726	27916793	1	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27916726	27916793	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27916794	27916934	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27916935	27917058	1	+	1	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27916935	27917058	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27917059	27917318	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27917319	27917417	1	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27917319	27917417	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27917418	27917699	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27917700	27917801	1	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27917700	27917801	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27917802	27917931	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27917932	27918068	0.96	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27917932	27918068	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27918069	27918183	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27918184	27918265	0.98	+	1	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27918184	27918265	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27918266	27918466	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27918467	27918487	1	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27918467	27918487	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27918488	27918689	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27918690	27918752	1	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27918690	27918752	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27918753	27918893	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27918894	27918941	1	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27918894	27918941	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27918942	27919030	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27919031	27919093	1	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27919031	27919093	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27919094	27919176	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27919177	27919230	1	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27919177	27919230	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27919231	27919314	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27919315	27919425	1	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27919315	27919425	.	+	.	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	stop_codon	27919426	27919428	.	+	0	transcript_id "Ledus.S1G335800.t1"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	transcript	27915897	27919425	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	start_codon	27915897	27915899	.	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27915897	27916136	0.58	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27915897	27916136	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27916137	27916287	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27916288	27916312	0.65	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27916288	27916312	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27916313	27916392	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27916393	27916462	0.71	+	2	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27916393	27916462	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27916463	27916561	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27916562	27916637	1	+	1	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27916562	27916637	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27916638	27916725	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27916726	27916793	1	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27916726	27916793	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27916794	27916934	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27916935	27917058	1	+	1	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27916935	27917058	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27917059	27917318	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27917319	27917417	1	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27917319	27917417	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27917418	27917699	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27917700	27917801	1	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27917700	27917801	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27917802	27917931	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27917932	27918068	0.92	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27917932	27918068	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27918069	27918183	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27918184	27918265	0.99	+	1	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27918184	27918265	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27918266	27918466	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27918467	27918487	1	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27918467	27918487	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27918488	27918689	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27918690	27918752	1	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27918690	27918752	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27918753	27918893	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27918894	27918941	1	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27918894	27918941	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27918942	27919030	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27919031	27919093	1	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27919031	27919093	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27919094	27919176	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27919177	27919230	1	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27919177	27919230	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	intron	27919231	27919314	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	CDS	27919315	27919425	1	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	exon	27919315	27919425	.	+	.	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
Ledus.S1	AUGUSTUS	stop_codon	27919426	27919428	.	+	0	transcript_id "Ledus.S1G335800.t2"; gene_id "Ledus.S1G335800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11823.t1 is derived from g5442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6996624	6996830	.	-	.	Ledus.S4G097900
Ledus.S4	AUGUSTUS	transcript	6996624	6996830	.	-	.	transcript_id "Ledus.S4G097900.t1"; gene_id "Ledus.S4G097900"
Ledus.S4	AUGUSTUS	stop_codon	6996621	6996623	.	-	0	transcript_id "Ledus.S4G097900.t1"; gene_id "Ledus.S4G097900"
Ledus.S4	AUGUSTUS	CDS	6996624	6996830	0.48	-	0	transcript_id "Ledus.S4G097900.t1"; gene_id "Ledus.S4G097900"
Ledus.S4	AUGUSTUS	exon	6996624	6996830	.	-	.	transcript_id "Ledus.S4G097900.t1"; gene_id "Ledus.S4G097900"
Ledus.S4	AUGUSTUS	start_codon	6996828	6996830	.	-	0	transcript_id "Ledus.S4G097900.t1"; gene_id "Ledus.S4G097900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11735.t1 is derived from g5354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6469557	6470082	.	-	.	Ledus.S4G089100
Ledus.S4	AUGUSTUS	transcript	6469557	6470082	.	-	.	transcript_id "Ledus.S4G089100.t1"; gene_id "Ledus.S4G089100"
Ledus.S4	AUGUSTUS	stop_codon	6469554	6469556	.	-	0	transcript_id "Ledus.S4G089100.t1"; gene_id "Ledus.S4G089100"
Ledus.S4	AUGUSTUS	CDS	6469557	6469592	0.45	-	0	transcript_id "Ledus.S4G089100.t1"; gene_id "Ledus.S4G089100"
Ledus.S4	AUGUSTUS	exon	6469557	6469592	.	-	.	transcript_id "Ledus.S4G089100.t1"; gene_id "Ledus.S4G089100"
Ledus.S4	AUGUSTUS	intron	6469593	6469704	.	-	.	transcript_id "Ledus.S4G089100.t1"; gene_id "Ledus.S4G089100"
Ledus.S4	AUGUSTUS	CDS	6469705	6470082	0.38	-	0	transcript_id "Ledus.S4G089100.t1"; gene_id "Ledus.S4G089100"
Ledus.S4	AUGUSTUS	exon	6469705	6470082	.	-	.	transcript_id "Ledus.S4G089100.t1"; gene_id "Ledus.S4G089100"
Ledus.S4	AUGUSTUS	start_codon	6470080	6470082	.	-	0	transcript_id "Ledus.S4G089100.t1"; gene_id "Ledus.S4G089100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7626.t1 is derived from g12297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4424326	4431712	.	-	.	Ledus.S5G040400
Ledus.S5	AUGUSTUS	transcript	4424326	4431712	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	stop_codon	4424323	4424325	.	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4424326	4424328	0.99	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4424326	4424328	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4424329	4424457	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4424458	4424560	0.72	-	1	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4424458	4424560	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4424561	4424662	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4424663	4424801	1	-	2	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4424663	4424801	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4424802	4424905	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4424906	4424983	1	-	2	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4424906	4424983	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4424984	4425144	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4425145	4425313	1	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4425145	4425313	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4425314	4425392	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4425393	4425509	0.98	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4425393	4425509	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4425510	4425612	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4425613	4425759	0.99	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4425613	4425759	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4425760	4425864	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4425865	4426059	0.86	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4425865	4426059	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4426060	4426186	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4426187	4426432	1	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4426187	4426432	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4426433	4426602	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4426603	4426673	0.87	-	2	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4426603	4426673	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4426674	4426757	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4426758	4426845	0.83	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4426758	4426845	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4426846	4426941	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4426942	4427104	1	-	1	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4426942	4427104	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4427105	4427228	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4427229	4427350	1	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4427229	4427350	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4427351	4427496	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4427497	4427589	1	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4427497	4427589	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4427590	4427710	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4427711	4427851	0.97	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4427711	4427851	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4427852	4427959	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4427960	4428043	0.97	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4427960	4428043	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4428044	4428169	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4428170	4428286	1	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4428170	4428286	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4428287	4428465	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4428466	4428567	1	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4428466	4428567	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4428568	4428652	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4428653	4428754	1	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4428653	4428754	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4428755	4428874	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4428875	4428959	0.99	-	1	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4428875	4428959	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4428960	4429069	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4429070	4429152	0.52	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4429070	4429152	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4429153	4429243	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4429244	4429294	1	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4429244	4429294	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4429295	4429493	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4429494	4429617	1	-	1	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4429494	4429617	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4429618	4429723	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4429724	4429884	1	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4429724	4429884	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4429885	4430105	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4430106	4430220	1	-	1	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4430106	4430220	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4430221	4430358	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4430359	4430488	1	-	2	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4430359	4430488	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4430489	4430596	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4430597	4430762	1	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4430597	4430762	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4430763	4430928	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4430929	4431136	1	-	1	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4430929	4431136	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4431137	4431301	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4431302	4431471	1	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4431302	4431471	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	intron	4431472	4431697	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	CDS	4431698	4431712	0.44	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	exon	4431698	4431712	.	-	.	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
Ledus.S5	AUGUSTUS	start_codon	4431710	4431712	.	-	0	transcript_id "Ledus.S5G040400.t1"; gene_id "Ledus.S5G040400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11635.t1 is derived from g5254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5696500	5698762	.	-	.	Ledus.S4G079100
Ledus.S4	AUGUSTUS	transcript	5696500	5698762	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	stop_codon	5696497	5696499	.	-	0	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	CDS	5696500	5696595	1	-	0	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	exon	5696500	5696595	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	intron	5696596	5696675	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	CDS	5696676	5696713	1	-	2	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	exon	5696676	5696713	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	intron	5696714	5696836	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	CDS	5696837	5697059	1	-	0	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	exon	5696837	5697059	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	intron	5697060	5697195	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	CDS	5697196	5697345	1	-	0	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	exon	5697196	5697345	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	intron	5697346	5697416	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	CDS	5697417	5697512	1	-	0	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	exon	5697417	5697512	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	intron	5697513	5697812	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	CDS	5697813	5698553	1	-	0	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	exon	5697813	5698553	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	intron	5698554	5698714	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	CDS	5698715	5698762	0.56	-	0	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	exon	5698715	5698762	.	-	.	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
Ledus.S4	AUGUSTUS	start_codon	5698760	5698762	.	-	0	transcript_id "Ledus.S4G079100.t1"; gene_id "Ledus.S4G079100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7174.t1 is derived from g6705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1952624	1952942	.	-	.	Ledus.C7G023500
Ledus.C7	AUGUSTUS	transcript	1952624	1952942	.	-	.	transcript_id "Ledus.C7G023500.t1"; gene_id "Ledus.C7G023500"
Ledus.C7	AUGUSTUS	stop_codon	1952621	1952623	.	-	0	transcript_id "Ledus.C7G023500.t1"; gene_id "Ledus.C7G023500"
Ledus.C7	AUGUSTUS	CDS	1952624	1952824	0.93	-	0	transcript_id "Ledus.C7G023500.t1"; gene_id "Ledus.C7G023500"
Ledus.C7	AUGUSTUS	exon	1952624	1952824	.	-	.	transcript_id "Ledus.C7G023500.t1"; gene_id "Ledus.C7G023500"
Ledus.C7	AUGUSTUS	intron	1952825	1952933	.	-	.	transcript_id "Ledus.C7G023500.t1"; gene_id "Ledus.C7G023500"
Ledus.C7	AUGUSTUS	CDS	1952934	1952942	0.43	-	0	transcript_id "Ledus.C7G023500.t1"; gene_id "Ledus.C7G023500"
Ledus.C7	AUGUSTUS	exon	1952934	1952942	.	-	.	transcript_id "Ledus.C7G023500.t1"; gene_id "Ledus.C7G023500"
Ledus.C7	AUGUSTUS	start_codon	1952940	1952942	.	-	0	transcript_id "Ledus.C7G023500.t1"; gene_id "Ledus.C7G023500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2270.t1 is derived from g9133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16796188	16796490	.	+	.	Ledus.S2G215200
Ledus.S2	AUGUSTUS	transcript	16796188	16796490	.	+	.	transcript_id "Ledus.S2G215200.t1"; gene_id "Ledus.S2G215200"
Ledus.S2	AUGUSTUS	start_codon	16796188	16796190	.	+	0	transcript_id "Ledus.S2G215200.t1"; gene_id "Ledus.S2G215200"
Ledus.S2	AUGUSTUS	CDS	16796188	16796490	0.98	+	0	transcript_id "Ledus.S2G215200.t1"; gene_id "Ledus.S2G215200"
Ledus.S2	AUGUSTUS	exon	16796188	16796490	.	+	.	transcript_id "Ledus.S2G215200.t1"; gene_id "Ledus.S2G215200"
Ledus.S2	AUGUSTUS	stop_codon	16796491	16796493	.	+	0	transcript_id "Ledus.S2G215200.t1"; gene_id "Ledus.S2G215200"
# This transcript jg939.t2 is derived from g7800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg940.t1 is derived from g7801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6244435	6244863	.	+	.	Ledus.S2G082200
Ledus.S2	AUGUSTUS	transcript	6244435	6244863	.	+	.	transcript_id "Ledus.S2G082200.t1"; gene_id "Ledus.S2G082200"
Ledus.S2	AUGUSTUS	start_codon	6244435	6244437	.	+	0	transcript_id "Ledus.S2G082200.t1"; gene_id "Ledus.S2G082200"
Ledus.S2	AUGUSTUS	CDS	6244435	6244500	0.93	+	0	transcript_id "Ledus.S2G082200.t1"; gene_id "Ledus.S2G082200"
Ledus.S2	AUGUSTUS	exon	6244435	6244500	.	+	.	transcript_id "Ledus.S2G082200.t1"; gene_id "Ledus.S2G082200"
Ledus.S2	AUGUSTUS	intron	6244501	6244677	.	+	.	transcript_id "Ledus.S2G082200.t1"; gene_id "Ledus.S2G082200"
Ledus.S2	AUGUSTUS	CDS	6244678	6244863	0.69	+	0	transcript_id "Ledus.S2G082200.t1"; gene_id "Ledus.S2G082200"
Ledus.S2	AUGUSTUS	exon	6244678	6244863	.	+	.	transcript_id "Ledus.S2G082200.t1"; gene_id "Ledus.S2G082200"
Ledus.S2	AUGUSTUS	stop_codon	6244864	6244866	.	+	0	transcript_id "Ledus.S2G082200.t1"; gene_id "Ledus.S2G082200"
# This transcript jg3448.t2 is derived from g883.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3449.t1 is derived from g884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8419144	8421964	.	+	.	Ledus.S1G087000
Ledus.S1	AUGUSTUS	transcript	8419144	8421964	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	start_codon	8419144	8419146	.	+	0	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	CDS	8419144	8419630	0.96	+	0	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	exon	8419144	8419630	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	intron	8419631	8419896	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	CDS	8419897	8419985	1	+	2	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	exon	8419897	8419985	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	intron	8419986	8420148	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	CDS	8420149	8420211	1	+	0	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	exon	8420149	8420211	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	intron	8420212	8420499	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	CDS	8420500	8420709	1	+	0	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	exon	8420500	8420709	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	intron	8420710	8420845	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	CDS	8420846	8420914	1	+	0	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	exon	8420846	8420914	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	intron	8420915	8421017	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	CDS	8421018	8421179	1	+	0	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	exon	8421018	8421179	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	intron	8421180	8421298	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	CDS	8421299	8421392	1	+	0	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	exon	8421299	8421392	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	intron	8421393	8421515	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	CDS	8421516	8421658	1	+	2	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	exon	8421516	8421658	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	intron	8421659	8421760	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	CDS	8421761	8421964	0.98	+	0	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	exon	8421761	8421964	.	+	.	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
Ledus.S1	AUGUSTUS	stop_codon	8421965	8421967	.	+	0	transcript_id "Ledus.S1G087000.t1"; gene_id "Ledus.S1G087000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11788.t1 is derived from g5407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6789775	6797660	.	+	.	Ledus.S4G094400
Ledus.S4	AUGUSTUS	transcript	6789775	6797660	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	start_codon	6789775	6789777	.	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6789775	6789831	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6789775	6789831	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6789832	6790195	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6790196	6790268	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6790196	6790268	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6790269	6790451	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6790452	6790516	1	+	2	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6790452	6790516	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6790517	6790665	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6790666	6790743	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6790666	6790743	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6790744	6790896	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6790897	6790989	0.61	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6790897	6790989	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6790990	6791122	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6791123	6791193	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6791123	6791193	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6791194	6791326	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6791327	6791419	1	+	1	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6791327	6791419	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6791420	6791561	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6791562	6791631	1	+	1	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6791562	6791631	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6791632	6791732	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6791733	6791797	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6791733	6791797	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6791798	6791948	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6791949	6792144	1	+	1	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6791949	6792144	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6792145	6792295	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6792296	6792447	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6792296	6792447	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6792448	6792589	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6792590	6792683	1	+	1	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6792590	6792683	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6792684	6792786	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6792787	6792999	0.99	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6792787	6792999	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6793000	6793208	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6793209	6793420	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6793209	6793420	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6793421	6793549	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6793550	6793706	1	+	1	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6793550	6793706	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6793707	6793805	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6793806	6793918	0.54	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6793806	6793918	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6793919	6794068	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6794069	6794177	0.89	+	1	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6794069	6794177	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6794178	6794270	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6794271	6794441	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6794271	6794441	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6794442	6794525	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6794526	6794602	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6794526	6794602	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6794603	6794690	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6794691	6794793	1	+	1	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6794691	6794793	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6794794	6794940	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6794941	6795060	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6794941	6795060	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6795061	6795187	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6795188	6795331	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6795188	6795331	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6795332	6795441	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6795442	6795591	0.94	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6795442	6795591	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6795592	6795709	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6795710	6795853	0.99	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6795710	6795853	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6795854	6795990	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6795991	6796081	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6795991	6796081	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6796082	6796240	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6796241	6796368	1	+	2	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6796241	6796368	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6796369	6796445	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6796446	6796656	0.99	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6796446	6796656	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6796657	6796782	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6796783	6796955	1	+	2	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6796783	6796955	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6796956	6797039	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6797040	6797261	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6797040	6797261	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6797262	6797347	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6797348	6797534	1	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6797348	6797534	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	intron	6797535	6797613	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	CDS	6797614	6797660	0.99	+	2	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	exon	6797614	6797660	.	+	.	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
Ledus.S4	AUGUSTUS	stop_codon	6797661	6797663	.	+	0	transcript_id "Ledus.S4G094400.t1"; gene_id "Ledus.S4G094400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8719.t1 is derived from g9749.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1570443	1572646	.	-	.	Ledus.S3G019600
Ledus.S3	AUGUSTUS	transcript	1570443	1572646	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	stop_codon	1570440	1570442	.	-	0	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	CDS	1570443	1570554	0.74	-	1	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	exon	1570443	1570554	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	intron	1570555	1570666	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	CDS	1570667	1570758	0.94	-	0	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	exon	1570667	1570758	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	intron	1570759	1570839	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	CDS	1570840	1570964	1	-	2	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	exon	1570840	1570964	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	intron	1570965	1571153	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	CDS	1571154	1571214	1	-	0	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	exon	1571154	1571214	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	intron	1571215	1571297	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	CDS	1571298	1571384	1	-	0	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	exon	1571298	1571384	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	intron	1571385	1571480	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	CDS	1571481	1571519	1	-	0	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	exon	1571481	1571519	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	intron	1571520	1571612	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	CDS	1571613	1571682	1	-	1	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	exon	1571613	1571682	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	intron	1571683	1571835	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	CDS	1571836	1571950	1	-	2	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	exon	1571836	1571950	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	intron	1571951	1572144	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	CDS	1572145	1572184	1	-	0	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	exon	1572145	1572184	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	intron	1572185	1572303	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	CDS	1572304	1572363	0.99	-	0	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	exon	1572304	1572363	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	intron	1572364	1572598	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	CDS	1572599	1572646	1	-	0	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	exon	1572599	1572646	.	-	.	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
Ledus.S3	AUGUSTUS	start_codon	1572644	1572646	.	-	0	transcript_id "Ledus.S3G019600.t1"; gene_id "Ledus.S3G019600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6714.t1 is derived from g4157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33496529	33499520	.	+	.	Ledus.S1G413500
Ledus.S1	AUGUSTUS	transcript	33496529	33499520	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	start_codon	33496529	33496531	.	+	0	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	CDS	33496529	33497203	0.89	+	0	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	exon	33496529	33497203	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	intron	33497204	33497325	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	CDS	33497326	33497406	1	+	0	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	exon	33497326	33497406	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	intron	33497407	33497489	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	CDS	33497490	33497557	0.99	+	0	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	exon	33497490	33497557	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	intron	33497558	33497830	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	CDS	33497831	33498003	0.99	+	1	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	exon	33497831	33498003	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	intron	33498004	33498287	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	CDS	33498288	33498379	1	+	2	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	exon	33498288	33498379	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	intron	33498380	33498562	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	CDS	33498563	33498725	1	+	0	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	exon	33498563	33498725	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	intron	33498726	33498822	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	CDS	33498823	33498919	1	+	2	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	exon	33498823	33498919	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	intron	33498920	33499148	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	CDS	33499149	33499160	0.94	+	1	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	exon	33499149	33499160	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	intron	33499161	33499277	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	CDS	33499278	33499294	1	+	1	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	exon	33499278	33499294	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	intron	33499295	33499380	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	CDS	33499381	33499520	1	+	2	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	exon	33499381	33499520	.	+	.	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
Ledus.S1	AUGUSTUS	stop_codon	33499521	33499523	.	+	0	transcript_id "Ledus.S1G413500.t1"; gene_id "Ledus.S1G413500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4561.t1 is derived from g1998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17725667	17725996	.	+	.	Ledus.S1G198200
Ledus.S1	AUGUSTUS	transcript	17725667	17725996	.	+	.	transcript_id "Ledus.S1G198200.t1"; gene_id "Ledus.S1G198200"
Ledus.S1	AUGUSTUS	start_codon	17725667	17725669	.	+	0	transcript_id "Ledus.S1G198200.t1"; gene_id "Ledus.S1G198200"
Ledus.S1	AUGUSTUS	CDS	17725667	17725996	0.26	+	0	transcript_id "Ledus.S1G198200.t1"; gene_id "Ledus.S1G198200"
Ledus.S1	AUGUSTUS	exon	17725667	17725996	.	+	.	transcript_id "Ledus.S1G198200.t1"; gene_id "Ledus.S1G198200"
Ledus.S1	AUGUSTUS	stop_codon	17725997	17725999	.	+	0	transcript_id "Ledus.S1G198200.t1"; gene_id "Ledus.S1G198200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2123.t1 is derived from g8986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14822674	14827184	.	+	.	Ledus.S2G200500
Ledus.S2	AUGUSTUS	transcript	14822674	14827184	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	start_codon	14822674	14822676	.	+	0	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14822674	14822990	0.56	+	0	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14822674	14822990	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14822991	14823084	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14823085	14823190	0.64	+	1	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14823085	14823190	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14823191	14823282	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14823283	14823501	1	+	0	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14823283	14823501	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14823502	14823673	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14823674	14823734	1	+	0	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14823674	14823734	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14823735	14823833	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14823834	14823910	1	+	2	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14823834	14823910	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14823911	14824055	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14824056	14824313	1	+	0	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14824056	14824313	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14824314	14824428	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14824429	14824518	0.96	+	0	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14824429	14824518	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14824519	14824667	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14824668	14824802	0.77	+	0	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14824668	14824802	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14824803	14824908	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14824909	14825058	1	+	0	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14824909	14825058	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14825059	14825146	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14825147	14825250	1	+	0	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14825147	14825250	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14825251	14825366	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14825367	14825420	1	+	1	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14825367	14825420	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14825421	14825559	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14825560	14825650	1	+	1	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14825560	14825650	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14825651	14825728	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14825729	14825812	1	+	0	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14825729	14825812	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14825813	14825908	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14825909	14826083	1	+	0	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14825909	14826083	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14826084	14826171	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14826172	14826226	0.63	+	2	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14826172	14826226	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14826227	14826437	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14826438	14826550	0.71	+	1	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14826438	14826550	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14826551	14826638	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14826639	14826866	1	+	2	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14826639	14826866	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	intron	14826867	14826984	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	CDS	14826985	14827184	1	+	2	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	exon	14826985	14827184	.	+	.	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
Ledus.S2	AUGUSTUS	stop_codon	14827185	14827187	.	+	0	transcript_id "Ledus.S2G200500.t1"; gene_id "Ledus.S2G200500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg211.t1 is derived from g7072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	928396	928602	.	-	.	Ledus.S2G009300
Ledus.S2	AUGUSTUS	transcript	928396	928602	.	-	.	transcript_id "Ledus.S2G009300.t1"; gene_id "Ledus.S2G009300"
Ledus.S2	AUGUSTUS	stop_codon	928393	928395	.	-	0	transcript_id "Ledus.S2G009300.t1"; gene_id "Ledus.S2G009300"
Ledus.S2	AUGUSTUS	CDS	928396	928602	0.88	-	0	transcript_id "Ledus.S2G009300.t1"; gene_id "Ledus.S2G009300"
Ledus.S2	AUGUSTUS	exon	928396	928602	.	-	.	transcript_id "Ledus.S2G009300.t1"; gene_id "Ledus.S2G009300"
Ledus.S2	AUGUSTUS	start_codon	928600	928602	.	-	0	transcript_id "Ledus.S2G009300.t1"; gene_id "Ledus.S2G009300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4515.t1 is derived from g1952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17468053	17469990	.	+	.	Ledus.S1G193600
Ledus.S1	AUGUSTUS	transcript	17468053	17469990	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	start_codon	17468053	17468055	.	+	0	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	CDS	17468053	17468328	1	+	0	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	exon	17468053	17468328	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	intron	17468329	17468417	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	CDS	17468418	17468448	1	+	0	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	exon	17468418	17468448	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	intron	17468449	17468592	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	CDS	17468593	17468606	1	+	2	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	exon	17468593	17468606	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	intron	17468607	17468694	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	CDS	17468695	17468745	1	+	0	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	exon	17468695	17468745	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	intron	17468746	17468821	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	CDS	17468822	17468891	1	+	0	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	exon	17468822	17468891	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	intron	17468892	17468997	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	CDS	17468998	17469064	0.68	+	2	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	exon	17468998	17469064	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	intron	17469065	17469195	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	CDS	17469196	17469263	1	+	1	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	exon	17469196	17469263	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	intron	17469264	17469342	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	CDS	17469343	17469466	1	+	2	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	exon	17469343	17469466	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	intron	17469467	17469623	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	CDS	17469624	17469663	1	+	1	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	exon	17469624	17469663	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	intron	17469664	17469819	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	CDS	17469820	17469887	1	+	0	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	exon	17469820	17469887	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	intron	17469888	17469980	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	CDS	17469981	17469990	1	+	1	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	exon	17469981	17469990	.	+	.	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
Ledus.S1	AUGUSTUS	stop_codon	17469991	17469993	.	+	0	transcript_id "Ledus.S1G193600.t1"; gene_id "Ledus.S1G193600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2478.t1 is derived from g9341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18374764	18380666	.	-	.	Ledus.S2G236000
Ledus.S2	AUGUSTUS	transcript	18374764	18380666	.	-	.	transcript_id "Ledus.S2G236000.t1"; gene_id "Ledus.S2G236000"
Ledus.S2	AUGUSTUS	stop_codon	18374761	18374763	.	-	0	transcript_id "Ledus.S2G236000.t1"; gene_id "Ledus.S2G236000"
Ledus.S2	AUGUSTUS	CDS	18374764	18378522	1	-	0	transcript_id "Ledus.S2G236000.t1"; gene_id "Ledus.S2G236000"
Ledus.S2	AUGUSTUS	exon	18374764	18378522	.	-	.	transcript_id "Ledus.S2G236000.t1"; gene_id "Ledus.S2G236000"
Ledus.S2	AUGUSTUS	intron	18378523	18378933	.	-	.	transcript_id "Ledus.S2G236000.t1"; gene_id "Ledus.S2G236000"
Ledus.S2	AUGUSTUS	CDS	18378934	18379367	1	-	2	transcript_id "Ledus.S2G236000.t1"; gene_id "Ledus.S2G236000"
Ledus.S2	AUGUSTUS	exon	18378934	18379367	.	-	.	transcript_id "Ledus.S2G236000.t1"; gene_id "Ledus.S2G236000"
Ledus.S2	AUGUSTUS	intron	18379368	18380344	.	-	.	transcript_id "Ledus.S2G236000.t1"; gene_id "Ledus.S2G236000"
Ledus.S2	AUGUSTUS	CDS	18380345	18380666	0.33	-	0	transcript_id "Ledus.S2G236000.t1"; gene_id "Ledus.S2G236000"
Ledus.S2	AUGUSTUS	exon	18380345	18380666	.	-	.	transcript_id "Ledus.S2G236000.t1"; gene_id "Ledus.S2G236000"
Ledus.S2	AUGUSTUS	start_codon	18380664	18380666	.	-	0	transcript_id "Ledus.S2G236000.t1"; gene_id "Ledus.S2G236000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4053.t1 is derived from g1489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14357111	14359479	.	-	.	Ledus.S1G147400
Ledus.S1	AUGUSTUS	transcript	14357111	14359479	.	-	.	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	stop_codon	14357108	14357110	.	-	0	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	CDS	14357111	14357159	0.85	-	1	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	exon	14357111	14357159	.	-	.	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	intron	14357160	14357265	.	-	.	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	CDS	14357266	14357717	0.84	-	0	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	exon	14357266	14357717	.	-	.	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	intron	14357718	14357814	.	-	.	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	CDS	14357815	14358296	0.62	-	2	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	exon	14357815	14358296	.	-	.	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	intron	14358297	14358507	.	-	.	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	CDS	14358508	14359182	0.33	-	2	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	exon	14358508	14359182	.	-	.	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	intron	14359183	14359385	.	-	.	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	CDS	14359386	14359479	0.72	-	0	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	exon	14359386	14359479	.	-	.	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
Ledus.S1	AUGUSTUS	start_codon	14359477	14359479	.	-	0	transcript_id "Ledus.S1G147400.t1"; gene_id "Ledus.S1G147400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9630.t1 is derived from g10660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8460802	8462643	.	+	.	Ledus.S3G110700
Ledus.S3	AUGUSTUS	transcript	8460802	8462643	.	+	.	transcript_id "Ledus.S3G110700.t1"; gene_id "Ledus.S3G110700"
Ledus.S3	AUGUSTUS	start_codon	8460802	8460804	.	+	0	transcript_id "Ledus.S3G110700.t1"; gene_id "Ledus.S3G110700"
Ledus.S3	AUGUSTUS	CDS	8460802	8462643	0.7	+	0	transcript_id "Ledus.S3G110700.t1"; gene_id "Ledus.S3G110700"
Ledus.S3	AUGUSTUS	exon	8460802	8462643	.	+	.	transcript_id "Ledus.S3G110700.t1"; gene_id "Ledus.S3G110700"
Ledus.S3	AUGUSTUS	stop_codon	8462644	8462646	.	+	0	transcript_id "Ledus.S3G110700.t1"; gene_id "Ledus.S3G110700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8254.t1 is derived from g12925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10176513	10178676	.	+	.	Ledus.S5G103200
Ledus.S5	AUGUSTUS	transcript	10176513	10178676	.	+	.	transcript_id "Ledus.S5G103200.t1"; gene_id "Ledus.S5G103200"
Ledus.S5	AUGUSTUS	start_codon	10176513	10176515	.	+	0	transcript_id "Ledus.S5G103200.t1"; gene_id "Ledus.S5G103200"
Ledus.S5	AUGUSTUS	CDS	10176513	10177804	0.78	+	0	transcript_id "Ledus.S5G103200.t1"; gene_id "Ledus.S5G103200"
Ledus.S5	AUGUSTUS	exon	10176513	10177804	.	+	.	transcript_id "Ledus.S5G103200.t1"; gene_id "Ledus.S5G103200"
Ledus.S5	AUGUSTUS	intron	10177805	10177882	.	+	.	transcript_id "Ledus.S5G103200.t1"; gene_id "Ledus.S5G103200"
Ledus.S5	AUGUSTUS	CDS	10177883	10178152	1	+	1	transcript_id "Ledus.S5G103200.t1"; gene_id "Ledus.S5G103200"
Ledus.S5	AUGUSTUS	exon	10177883	10178152	.	+	.	transcript_id "Ledus.S5G103200.t1"; gene_id "Ledus.S5G103200"
Ledus.S5	AUGUSTUS	intron	10178153	10178237	.	+	.	transcript_id "Ledus.S5G103200.t1"; gene_id "Ledus.S5G103200"
Ledus.S5	AUGUSTUS	CDS	10178238	10178676	1	+	1	transcript_id "Ledus.S5G103200.t1"; gene_id "Ledus.S5G103200"
Ledus.S5	AUGUSTUS	exon	10178238	10178676	.	+	.	transcript_id "Ledus.S5G103200.t1"; gene_id "Ledus.S5G103200"
Ledus.S5	AUGUSTUS	stop_codon	10178677	10178679	.	+	0	transcript_id "Ledus.S5G103200.t1"; gene_id "Ledus.S5G103200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6375.t1 is derived from g3818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30897916	30899192	.	-	.	Ledus.S1G379600
Ledus.S1	AUGUSTUS	transcript	30897916	30899192	.	-	.	transcript_id "Ledus.S1G379600.t1"; gene_id "Ledus.S1G379600"
Ledus.S1	AUGUSTUS	stop_codon	30897913	30897915	.	-	0	transcript_id "Ledus.S1G379600.t1"; gene_id "Ledus.S1G379600"
Ledus.S1	AUGUSTUS	CDS	30897916	30899005	0.54	-	1	transcript_id "Ledus.S1G379600.t1"; gene_id "Ledus.S1G379600"
Ledus.S1	AUGUSTUS	exon	30897916	30899005	.	-	.	transcript_id "Ledus.S1G379600.t1"; gene_id "Ledus.S1G379600"
Ledus.S1	AUGUSTUS	intron	30899006	30899100	.	-	.	transcript_id "Ledus.S1G379600.t1"; gene_id "Ledus.S1G379600"
Ledus.S1	AUGUSTUS	CDS	30899101	30899192	0.54	-	0	transcript_id "Ledus.S1G379600.t1"; gene_id "Ledus.S1G379600"
Ledus.S1	AUGUSTUS	exon	30899101	30899192	.	-	.	transcript_id "Ledus.S1G379600.t1"; gene_id "Ledus.S1G379600"
Ledus.S1	AUGUSTUS	start_codon	30899190	30899192	.	-	0	transcript_id "Ledus.S1G379600.t1"; gene_id "Ledus.S1G379600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8610.t1 is derived from g9640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	644978	646099	.	-	.	Ledus.S3G008700
Ledus.S3	AUGUSTUS	transcript	644978	646099	.	-	.	transcript_id "Ledus.S3G008700.t1"; gene_id "Ledus.S3G008700"
Ledus.S3	AUGUSTUS	stop_codon	644975	644977	.	-	0	transcript_id "Ledus.S3G008700.t1"; gene_id "Ledus.S3G008700"
Ledus.S3	AUGUSTUS	CDS	644978	646099	0.78	-	0	transcript_id "Ledus.S3G008700.t1"; gene_id "Ledus.S3G008700"
Ledus.S3	AUGUSTUS	exon	644978	646099	.	-	.	transcript_id "Ledus.S3G008700.t1"; gene_id "Ledus.S3G008700"
Ledus.S3	AUGUSTUS	start_codon	646097	646099	.	-	0	transcript_id "Ledus.S3G008700.t1"; gene_id "Ledus.S3G008700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10731.t1 is derived from g11761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17400709	17403629	.	+	.	Ledus.S3G220800
Ledus.S3	AUGUSTUS	transcript	17400709	17403629	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	start_codon	17400709	17400711	.	+	0	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	CDS	17400709	17400981	1	+	0	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	exon	17400709	17400981	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	intron	17400982	17401053	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	CDS	17401054	17401248	0.92	+	0	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	exon	17401054	17401248	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	intron	17401249	17402277	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	CDS	17402278	17402388	1	+	0	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	exon	17402278	17402388	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	intron	17402389	17402612	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	CDS	17402613	17402704	1	+	0	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	exon	17402613	17402704	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	intron	17402705	17402772	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	CDS	17402773	17402871	1	+	1	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	exon	17402773	17402871	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	intron	17402872	17402955	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	CDS	17402956	17403013	1	+	1	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	exon	17402956	17403013	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	intron	17403014	17403088	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	CDS	17403089	17403202	1	+	0	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	exon	17403089	17403202	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	intron	17403203	17403270	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	CDS	17403271	17403368	1	+	0	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	exon	17403271	17403368	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	intron	17403369	17403460	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	CDS	17403461	17403629	0.99	+	1	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	exon	17403461	17403629	.	+	.	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
Ledus.S3	AUGUSTUS	stop_codon	17403630	17403632	.	+	0	transcript_id "Ledus.S3G220800.t1"; gene_id "Ledus.S3G220800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1689.t1 is derived from g8550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11852426	11854291	.	-	.	Ledus.S2G157100
Ledus.S2	AUGUSTUS	transcript	11852426	11854291	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	stop_codon	11852423	11852425	.	-	0	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	CDS	11852426	11852600	1	-	1	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	exon	11852426	11852600	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	intron	11852601	11852695	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	CDS	11852696	11852828	1	-	2	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	exon	11852696	11852828	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	intron	11852829	11852906	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	CDS	11852907	11852996	1	-	2	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	exon	11852907	11852996	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	intron	11852997	11853161	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	CDS	11853162	11853371	1	-	2	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	exon	11853162	11853371	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	intron	11853372	11853557	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	CDS	11853558	11853648	1	-	0	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	exon	11853558	11853648	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	intron	11853649	11853785	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	CDS	11853786	11853920	1	-	0	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	exon	11853786	11853920	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	intron	11853921	11853994	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	CDS	11853995	11854291	0.57	-	0	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	exon	11853995	11854291	.	-	.	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
Ledus.S2	AUGUSTUS	start_codon	11854289	11854291	.	-	0	transcript_id "Ledus.S2G157100.t1"; gene_id "Ledus.S2G157100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8371.t1 is derived from g13043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11261754	11265054	.	-	.	Ledus.S5G114900
Ledus.S5	AUGUSTUS	transcript	11261754	11265054	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	stop_codon	11261751	11261753	.	-	0	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11261754	11261775	0.94	-	1	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11261754	11261775	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11261776	11261861	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11261862	11261948	0.94	-	1	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11261862	11261948	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11261949	11262040	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11262041	11262289	0.92	-	1	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11262041	11262289	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11262290	11262397	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11262398	11262444	1	-	0	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11262398	11262444	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11262445	11262651	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11262652	11262733	1	-	1	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11262652	11262733	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11262734	11263047	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11263048	11263106	1	-	0	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11263048	11263106	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11263107	11263325	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11263326	11263388	1	-	0	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11263326	11263388	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11263389	11263636	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11263637	11263698	1	-	2	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11263637	11263698	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11263699	11263807	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11263808	11263970	1	-	0	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11263808	11263970	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11263971	11264067	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11264068	11264147	1	-	2	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11264068	11264147	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11264148	11264251	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11264252	11264315	1	-	0	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11264252	11264315	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11264316	11264464	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11264465	11264633	1	-	1	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11264465	11264633	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11264634	11264766	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11264767	11264819	1	-	0	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11264767	11264819	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11264820	11264907	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11264908	11265054	0.98	-	0	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11264908	11265054	.	-	.	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	start_codon	11265052	11265054	.	-	0	transcript_id "Ledus.S5G114900.t1"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	transcript	11261754	11265054	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	stop_codon	11261751	11261753	.	-	0	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11261754	11261775	0.95	-	1	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11261754	11261775	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11261776	11261861	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11261862	11261948	0.95	-	1	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11261862	11261948	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11261949	11262040	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11262041	11262289	0.93	-	1	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11262041	11262289	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11262290	11262397	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11262398	11262444	0.99	-	0	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11262398	11262444	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11262445	11262651	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11262652	11262733	1	-	1	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11262652	11262733	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11262734	11263047	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11263048	11263112	0.99	-	0	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11263048	11263112	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11263113	11263325	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11263326	11263388	1	-	0	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11263326	11263388	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11263389	11263636	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11263637	11263698	1	-	2	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11263637	11263698	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11263699	11263807	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11263808	11263970	1	-	0	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11263808	11263970	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11263971	11264067	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11264068	11264147	1	-	2	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11264068	11264147	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11264148	11264251	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11264252	11264315	1	-	0	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11264252	11264315	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11264316	11264464	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11264465	11264633	1	-	1	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11264465	11264633	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11264634	11264766	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11264767	11264819	1	-	0	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11264767	11264819	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	intron	11264820	11264907	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	CDS	11264908	11265054	0.98	-	0	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	exon	11264908	11265054	.	-	.	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
Ledus.S5	AUGUSTUS	start_codon	11265052	11265054	.	-	0	transcript_id "Ledus.S5G114900.t2"; gene_id "Ledus.S5G114900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4152.t1 is derived from g1588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14978137	14980425	.	-	.	Ledus.S1G157300
Ledus.S1	AUGUSTUS	transcript	14978137	14980425	.	-	.	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	stop_codon	14978134	14978136	.	-	0	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	CDS	14978137	14978180	0.99	-	2	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	exon	14978137	14978180	.	-	.	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	intron	14978181	14978336	.	-	.	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	CDS	14978337	14978398	1	-	1	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	exon	14978337	14978398	.	-	.	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	intron	14978399	14978511	.	-	.	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	CDS	14978512	14978644	1	-	2	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	exon	14978512	14978644	.	-	.	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	intron	14978645	14978734	.	-	.	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	CDS	14978735	14979063	0.99	-	1	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	exon	14978735	14979063	.	-	.	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	intron	14979064	14979174	.	-	.	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	CDS	14979175	14979993	0.9	-	1	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	exon	14979175	14979993	.	-	.	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	intron	14979994	14980402	.	-	.	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	CDS	14980403	14980425	1	-	0	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	exon	14980403	14980425	.	-	.	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
Ledus.S1	AUGUSTUS	start_codon	14980423	14980425	.	-	0	transcript_id "Ledus.S1G157300.t1"; gene_id "Ledus.S1G157300"
# This transcript jg11618.t2 is derived from g5236.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11619.t1 is derived from g5237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5551117	5551554	.	-	.	Ledus.S4G077500
Ledus.S4	AUGUSTUS	transcript	5551117	5551554	.	-	.	transcript_id "Ledus.S4G077500.t1"; gene_id "Ledus.S4G077500"
Ledus.S4	AUGUSTUS	stop_codon	5551114	5551116	.	-	0	transcript_id "Ledus.S4G077500.t1"; gene_id "Ledus.S4G077500"
Ledus.S4	AUGUSTUS	CDS	5551117	5551379	0.48	-	2	transcript_id "Ledus.S4G077500.t1"; gene_id "Ledus.S4G077500"
Ledus.S4	AUGUSTUS	exon	5551117	5551379	.	-	.	transcript_id "Ledus.S4G077500.t1"; gene_id "Ledus.S4G077500"
Ledus.S4	AUGUSTUS	intron	5551380	5551433	.	-	.	transcript_id "Ledus.S4G077500.t1"; gene_id "Ledus.S4G077500"
Ledus.S4	AUGUSTUS	CDS	5551434	5551554	0.89	-	0	transcript_id "Ledus.S4G077500.t1"; gene_id "Ledus.S4G077500"
Ledus.S4	AUGUSTUS	exon	5551434	5551554	.	-	.	transcript_id "Ledus.S4G077500.t1"; gene_id "Ledus.S4G077500"
Ledus.S4	AUGUSTUS	start_codon	5551552	5551554	.	-	0	transcript_id "Ledus.S4G077500.t1"; gene_id "Ledus.S4G077500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1135.t1 is derived from g7996.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7862259	7863568	.	-	.	Ledus.S2G101700
Ledus.S2	AUGUSTUS	transcript	7862259	7863568	.	-	.	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	stop_codon	7862256	7862258	.	-	0	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	CDS	7862259	7862275	0.61	-	2	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	exon	7862259	7862275	.	-	.	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	intron	7862276	7862619	.	-	.	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	CDS	7862620	7862663	0.49	-	1	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	exon	7862620	7862663	.	-	.	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	intron	7862664	7862749	.	-	.	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	CDS	7862750	7863247	0.19	-	1	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	exon	7862750	7863247	.	-	.	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	intron	7863248	7863350	.	-	.	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	CDS	7863351	7863364	0.51	-	0	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	exon	7863351	7863364	.	-	.	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	intron	7863365	7863565	.	-	.	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	CDS	7863566	7863568	0.95	-	0	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	exon	7863566	7863568	.	-	.	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
Ledus.S2	AUGUSTUS	start_codon	7863566	7863568	.	-	0	transcript_id "Ledus.S2G101700.t1"; gene_id "Ledus.S2G101700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg402.t1 is derived from g7263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2230791	2231285	.	+	.	Ledus.S2G028400
Ledus.S2	AUGUSTUS	transcript	2230791	2231285	.	+	.	transcript_id "Ledus.S2G028400.t1"; gene_id "Ledus.S2G028400"
Ledus.S2	AUGUSTUS	start_codon	2230791	2230793	.	+	0	transcript_id "Ledus.S2G028400.t1"; gene_id "Ledus.S2G028400"
Ledus.S2	AUGUSTUS	CDS	2230791	2231285	0.9	+	0	transcript_id "Ledus.S2G028400.t1"; gene_id "Ledus.S2G028400"
Ledus.S2	AUGUSTUS	exon	2230791	2231285	.	+	.	transcript_id "Ledus.S2G028400.t1"; gene_id "Ledus.S2G028400"
Ledus.S2	AUGUSTUS	stop_codon	2231286	2231288	.	+	0	transcript_id "Ledus.S2G028400.t1"; gene_id "Ledus.S2G028400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10695.t1 is derived from g11725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17142831	17143130	.	-	.	Ledus.S3G217200
Ledus.S3	AUGUSTUS	transcript	17142831	17143130	.	-	.	transcript_id "Ledus.S3G217200.t1"; gene_id "Ledus.S3G217200"
Ledus.S3	AUGUSTUS	stop_codon	17142828	17142830	.	-	0	transcript_id "Ledus.S3G217200.t1"; gene_id "Ledus.S3G217200"
Ledus.S3	AUGUSTUS	CDS	17142831	17143130	0.94	-	0	transcript_id "Ledus.S3G217200.t1"; gene_id "Ledus.S3G217200"
Ledus.S3	AUGUSTUS	exon	17142831	17143130	.	-	.	transcript_id "Ledus.S3G217200.t1"; gene_id "Ledus.S3G217200"
Ledus.S3	AUGUSTUS	start_codon	17143128	17143130	.	-	0	transcript_id "Ledus.S3G217200.t1"; gene_id "Ledus.S3G217200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6036.t1 is derived from g3479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28613420	28615075	.	+	.	Ledus.S1G345700
Ledus.S1	AUGUSTUS	transcript	28613420	28615075	.	+	.	transcript_id "Ledus.S1G345700.t1"; gene_id "Ledus.S1G345700"
Ledus.S1	AUGUSTUS	start_codon	28613420	28613422	.	+	0	transcript_id "Ledus.S1G345700.t1"; gene_id "Ledus.S1G345700"
Ledus.S1	AUGUSTUS	CDS	28613420	28615075	0.9	+	0	transcript_id "Ledus.S1G345700.t1"; gene_id "Ledus.S1G345700"
Ledus.S1	AUGUSTUS	exon	28613420	28615075	.	+	.	transcript_id "Ledus.S1G345700.t1"; gene_id "Ledus.S1G345700"
Ledus.S1	AUGUSTUS	stop_codon	28615076	28615078	.	+	0	transcript_id "Ledus.S1G345700.t1"; gene_id "Ledus.S1G345700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8828.t1 is derived from g9858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2188981	2191010	.	-	.	Ledus.S3G030500
Ledus.S3	AUGUSTUS	transcript	2188981	2191010	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	stop_codon	2188978	2188980	.	-	0	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	CDS	2188981	2189098	1	-	1	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	exon	2188981	2189098	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	intron	2189099	2189182	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	CDS	2189183	2189238	1	-	0	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	exon	2189183	2189238	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	intron	2189239	2189385	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	CDS	2189386	2189479	1	-	1	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	exon	2189386	2189479	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	intron	2189480	2189608	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	CDS	2189609	2189739	1	-	0	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	exon	2189609	2189739	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	intron	2189740	2189938	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	CDS	2189939	2190042	1	-	2	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	exon	2189939	2190042	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	intron	2190043	2190210	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	CDS	2190211	2190296	1	-	1	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	exon	2190211	2190296	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	intron	2190297	2190500	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	CDS	2190501	2190582	1	-	2	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	exon	2190501	2190582	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	intron	2190583	2190712	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	CDS	2190713	2190821	1	-	0	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	exon	2190713	2190821	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	intron	2190822	2190962	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	CDS	2190963	2191010	0.99	-	0	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	exon	2190963	2191010	.	-	.	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
Ledus.S3	AUGUSTUS	start_codon	2191008	2191010	.	-	0	transcript_id "Ledus.S3G030500.t1"; gene_id "Ledus.S3G030500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8930.t1 is derived from g9960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3257839	3258084	.	+	.	Ledus.S3G040700
Ledus.S3	AUGUSTUS	transcript	3257839	3258084	.	+	.	transcript_id "Ledus.S3G040700.t1"; gene_id "Ledus.S3G040700"
Ledus.S3	AUGUSTUS	start_codon	3257839	3257841	.	+	0	transcript_id "Ledus.S3G040700.t1"; gene_id "Ledus.S3G040700"
Ledus.S3	AUGUSTUS	CDS	3257839	3258084	0.95	+	0	transcript_id "Ledus.S3G040700.t1"; gene_id "Ledus.S3G040700"
Ledus.S3	AUGUSTUS	exon	3257839	3258084	.	+	.	transcript_id "Ledus.S3G040700.t1"; gene_id "Ledus.S3G040700"
Ledus.S3	AUGUSTUS	stop_codon	3258085	3258087	.	+	0	transcript_id "Ledus.S3G040700.t1"; gene_id "Ledus.S3G040700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7824.t1 is derived from g12495.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7249449	7251585	.	+	.	Ledus.S5G060200
Ledus.S5	AUGUSTUS	transcript	7249449	7251585	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	start_codon	7249449	7249451	.	+	0	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	CDS	7249449	7249645	0.86	+	0	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	exon	7249449	7249645	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	intron	7249646	7249998	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	CDS	7249999	7250065	1	+	1	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	exon	7249999	7250065	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	intron	7250066	7250230	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	CDS	7250231	7250325	1	+	0	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	exon	7250231	7250325	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	intron	7250326	7250410	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	CDS	7250411	7250513	1	+	1	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	exon	7250411	7250513	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	intron	7250514	7250628	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	CDS	7250629	7250717	1	+	0	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	exon	7250629	7250717	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	intron	7250718	7250835	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	CDS	7250836	7250879	0.45	+	1	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	exon	7250836	7250879	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	intron	7250880	7251275	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	CDS	7251276	7251334	0.99	+	2	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	exon	7251276	7251334	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	intron	7251335	7251444	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	CDS	7251445	7251585	0.44	+	0	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	exon	7251445	7251585	.	+	.	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
Ledus.S5	AUGUSTUS	stop_codon	7251586	7251588	.	+	0	transcript_id "Ledus.S5G060200.t1"; gene_id "Ledus.S5G060200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5489.t1 is derived from g2928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24508795	24511550	.	+	.	Ledus.S1G291000
Ledus.S1	AUGUSTUS	transcript	24508795	24511550	.	+	.	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	start_codon	24508795	24508797	.	+	0	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	CDS	24508795	24510291	0.54	+	0	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	exon	24508795	24510291	.	+	.	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	intron	24510292	24510428	.	+	.	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	CDS	24510429	24510749	1	+	0	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	exon	24510429	24510749	.	+	.	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	intron	24510750	24510838	.	+	.	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	CDS	24510839	24510925	1	+	0	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	exon	24510839	24510925	.	+	.	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	intron	24510926	24511146	.	+	.	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	CDS	24511147	24511429	0.72	+	0	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	exon	24511147	24511429	.	+	.	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	intron	24511430	24511524	.	+	.	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	CDS	24511525	24511550	0.72	+	2	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	exon	24511525	24511550	.	+	.	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
Ledus.S1	AUGUSTUS	stop_codon	24511551	24511553	.	+	0	transcript_id "Ledus.S1G291000.t1"; gene_id "Ledus.S1G291000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2935.t1 is derived from g370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4657189	4659122	.	-	.	Ledus.S1G035600
Ledus.S1	AUGUSTUS	transcript	4657189	4659122	.	-	.	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	stop_codon	4657186	4657188	.	-	0	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	CDS	4657189	4657371	0.99	-	0	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	exon	4657189	4657371	.	-	.	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	intron	4657372	4657461	.	-	.	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	CDS	4657462	4657561	1	-	1	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	exon	4657462	4657561	.	-	.	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	intron	4657562	4657753	.	-	.	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	CDS	4657754	4657950	1	-	0	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	exon	4657754	4657950	.	-	.	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	intron	4657951	4658228	.	-	.	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	CDS	4658229	4658309	1	-	0	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	exon	4658229	4658309	.	-	.	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	intron	4658310	4658404	.	-	.	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	CDS	4658405	4658851	1	-	0	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	exon	4658405	4658851	.	-	.	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	intron	4658852	4658972	.	-	.	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	CDS	4658973	4659122	0.85	-	0	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	exon	4658973	4659122	.	-	.	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
Ledus.S1	AUGUSTUS	start_codon	4659120	4659122	.	-	0	transcript_id "Ledus.S1G035600.t1"; gene_id "Ledus.S1G035600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3473.t1 is derived from g908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8631588	8634886	.	-	.	Ledus.S1G089400
Ledus.S1	AUGUSTUS	transcript	8631588	8634886	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	stop_codon	8631585	8631587	.	-	0	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8631588	8631603	0.45	-	1	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8631588	8631603	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	intron	8631604	8631731	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8631732	8631797	0.45	-	1	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8631732	8631797	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	intron	8631798	8631886	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8631887	8631936	0.45	-	0	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8631887	8631936	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	intron	8631937	8632043	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8632044	8632113	0.3	-	1	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8632044	8632113	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	intron	8632114	8632320	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8632321	8632452	0.29	-	1	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8632321	8632452	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	intron	8632453	8632559	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8632560	8632634	0.3	-	1	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8632560	8632634	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	intron	8632635	8632725	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8632726	8632909	0.29	-	2	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8632726	8632909	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	intron	8632910	8633041	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8633042	8633201	0.98	-	0	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8633042	8633201	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	intron	8633202	8633376	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8633377	8633457	1	-	0	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8633377	8633457	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	intron	8633458	8633650	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8633651	8633697	1	-	2	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8633651	8633697	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	intron	8633698	8633821	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8633822	8633913	1	-	1	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8633822	8633913	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	intron	8633914	8634095	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8634096	8634170	1	-	1	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8634096	8634170	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	intron	8634171	8634647	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	CDS	8634648	8634886	0.93	-	0	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	exon	8634648	8634886	.	-	.	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
Ledus.S1	AUGUSTUS	start_codon	8634884	8634886	.	-	0	transcript_id "Ledus.S1G089400.t1"; gene_id "Ledus.S1G089400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2048.t1 is derived from g8911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14329973	14333364	.	-	.	Ledus.S2G193000
Ledus.S2	AUGUSTUS	transcript	14329973	14333364	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	stop_codon	14329970	14329972	.	-	0	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	CDS	14329973	14331097	0.98	-	0	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	exon	14329973	14331097	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	intron	14331098	14331185	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	CDS	14331186	14331282	1	-	1	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	exon	14331186	14331282	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	intron	14331283	14331397	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	CDS	14331398	14331539	0.98	-	2	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	exon	14331398	14331539	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	intron	14331540	14331648	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	CDS	14331649	14331753	0.97	-	2	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	exon	14331649	14331753	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	intron	14331754	14331860	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	CDS	14331861	14331930	0.55	-	0	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	exon	14331861	14331930	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	intron	14331931	14332038	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	CDS	14332039	14332104	0.55	-	0	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	exon	14332039	14332104	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	intron	14332105	14332228	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	CDS	14332229	14332292	0.65	-	1	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	exon	14332229	14332292	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	intron	14332293	14332428	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	CDS	14332429	14332565	1	-	0	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	exon	14332429	14332565	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	intron	14332566	14332693	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	CDS	14332694	14332767	0.6	-	2	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	exon	14332694	14332767	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	intron	14332768	14332870	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	CDS	14332871	14332988	0.6	-	0	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	exon	14332871	14332988	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	intron	14332989	14333069	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	CDS	14333070	14333142	0.95	-	1	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	exon	14333070	14333142	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	intron	14333143	14333245	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	CDS	14333246	14333364	0.48	-	0	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	exon	14333246	14333364	.	-	.	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
Ledus.S2	AUGUSTUS	start_codon	14333362	14333364	.	-	0	transcript_id "Ledus.S2G193000.t1"; gene_id "Ledus.S2G193000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3897.t1 is derived from g1333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13470674	13473877	.	+	.	Ledus.S1G131800
Ledus.S1	AUGUSTUS	transcript	13470674	13473877	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	start_codon	13470674	13470676	.	+	0	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13470674	13471087	0.99	+	0	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13470674	13471087	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13471088	13471180	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13471181	13471354	1	+	0	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13471181	13471354	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13471355	13471453	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13471454	13471611	1	+	0	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13471454	13471611	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13471612	13471722	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13471723	13471870	1	+	1	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13471723	13471870	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13471871	13471954	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13471955	13472070	1	+	0	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13471955	13472070	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13472071	13472154	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13472155	13472293	1	+	1	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13472155	13472293	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13472294	13472390	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13472391	13472505	0.73	+	0	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13472391	13472505	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13472506	13472624	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13472625	13472693	0.62	+	2	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13472625	13472693	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13472694	13473162	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13473163	13473353	0.87	+	2	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13473163	13473353	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13473354	13473476	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13473477	13473523	1	+	0	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13473477	13473523	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13473524	13473759	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13473760	13473877	1	+	1	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13473760	13473877	.	+	.	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	stop_codon	13473878	13473880	.	+	0	transcript_id "Ledus.S1G131800.t1"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	transcript	13470674	13473877	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	start_codon	13470674	13470676	.	+	0	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13470674	13471087	0.98	+	0	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13470674	13471087	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13471088	13471180	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13471181	13471373	1	+	0	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13471181	13471373	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13471374	13471453	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13471454	13471471	1	+	2	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13471454	13471471	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13471472	13471550	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13471551	13471611	0.98	+	2	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13471551	13471611	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13471612	13471722	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13471723	13471870	0.99	+	1	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13471723	13471870	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13471871	13471954	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13471955	13472070	1	+	0	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13471955	13472070	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13472071	13472154	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13472155	13472293	1	+	1	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13472155	13472293	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13472294	13472390	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13472391	13472505	0.71	+	0	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13472391	13472505	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13472506	13472624	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13472625	13472693	0.56	+	2	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13472625	13472693	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13472694	13473162	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13473163	13473353	0.81	+	2	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13473163	13473353	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13473354	13473476	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13473477	13473523	1	+	0	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13473477	13473523	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	intron	13473524	13473759	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	CDS	13473760	13473877	1	+	1	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	exon	13473760	13473877	.	+	.	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
Ledus.S1	AUGUSTUS	stop_codon	13473878	13473880	.	+	0	transcript_id "Ledus.S1G131800.t2"; gene_id "Ledus.S1G131800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11305.t1 is derived from g4923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3475946	3478171	.	-	.	Ledus.S4G046100
Ledus.S4	AUGUSTUS	transcript	3475946	3478171	.	-	.	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	stop_codon	3475943	3475945	.	-	0	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	CDS	3475946	3476266	1	-	0	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	exon	3475946	3476266	.	-	.	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	intron	3476267	3476356	.	-	.	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	CDS	3476357	3476524	1	-	0	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	exon	3476357	3476524	.	-	.	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	intron	3476525	3476623	.	-	.	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	CDS	3476624	3476926	0.77	-	0	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	exon	3476624	3476926	.	-	.	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	intron	3476927	3476995	.	-	.	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	CDS	3476996	3478171	0.54	-	0	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	exon	3476996	3478171	.	-	.	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
Ledus.S4	AUGUSTUS	start_codon	3478169	3478171	.	-	0	transcript_id "Ledus.S4G046100.t1"; gene_id "Ledus.S4G046100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5113.t1 is derived from g2552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21777211	21778337	.	+	.	Ledus.S1G253400
Ledus.S1	AUGUSTUS	transcript	21777211	21778337	.	+	.	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	start_codon	21777211	21777213	.	+	0	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	CDS	21777211	21777483	0.79	+	0	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	exon	21777211	21777483	.	+	.	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	intron	21777484	21777575	.	+	.	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	CDS	21777576	21777707	1	+	0	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	exon	21777576	21777707	.	+	.	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	intron	21777708	21777798	.	+	.	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	CDS	21777799	21777915	1	+	0	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	exon	21777799	21777915	.	+	.	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	intron	21777916	21778001	.	+	.	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	CDS	21778002	21778337	0.91	+	0	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	exon	21778002	21778337	.	+	.	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
Ledus.S1	AUGUSTUS	stop_codon	21778338	21778340	.	+	0	transcript_id "Ledus.S1G253400.t1"; gene_id "Ledus.S1G253400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11098.t1 is derived from g4716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1778623	1787421	.	-	.	Ledus.S4G025400
Ledus.S4	AUGUSTUS	transcript	1778623	1787421	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	stop_codon	1778620	1778622	.	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1778623	1779099	0.98	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1778623	1779099	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1779100	1779215	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1779216	1779326	0.99	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1779216	1779326	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1779327	1779466	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1779467	1779548	1	-	1	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1779467	1779548	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1779549	1779633	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1779634	1779782	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1779634	1779782	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1779783	1779938	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1779939	1780078	1	-	2	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1779939	1780078	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1780079	1780234	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1780235	1780298	0.99	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1780235	1780298	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1780299	1780409	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1780410	1780583	0.93	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1780410	1780583	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1780584	1780682	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1780683	1780823	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1780683	1780823	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1780824	1780916	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1780917	1781018	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1780917	1781018	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1781019	1781164	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1781165	1781278	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1781165	1781278	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1781279	1781362	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1781363	1781439	1	-	2	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1781363	1781439	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1781440	1781585	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1781586	1781755	1	-	1	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1781586	1781755	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1781756	1781841	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1781842	1781963	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1781842	1781963	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1781964	1782106	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1782107	1782184	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1782107	1782184	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1782185	1782267	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1782268	1782345	0.98	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1782268	1782345	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1782346	1782463	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1782464	1782552	0.98	-	2	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1782464	1782552	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1782553	1782724	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1782725	1782818	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1782725	1782818	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1782819	1782988	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1782989	1783060	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1782989	1783060	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1783061	1783259	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1783260	1783331	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1783260	1783331	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1783332	1783426	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1783427	1783507	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1783427	1783507	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1783508	1783694	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1783695	1783835	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1783695	1783835	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1783836	1783979	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1783980	1784078	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1783980	1784078	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1784079	1784189	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1784190	1784249	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1784190	1784249	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1784250	1784347	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1784348	1784440	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1784348	1784440	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1784441	1784524	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1784525	1784617	0.98	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1784525	1784617	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1784618	1784727	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1784728	1785090	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1784728	1785090	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1785091	1785188	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1785189	1785657	0.97	-	1	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1785189	1785657	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1785658	1785954	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1785955	1786469	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1785955	1786469	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1786470	1786641	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1786642	1786851	1	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1786642	1786851	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1786852	1787027	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1787028	1787082	1	-	1	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1787028	1787082	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	intron	1787083	1787185	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	CDS	1787186	1787421	0.89	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	exon	1787186	1787421	.	-	.	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
Ledus.S4	AUGUSTUS	start_codon	1787419	1787421	.	-	0	transcript_id "Ledus.S4G025400.t1"; gene_id "Ledus.S4G025400"
# This transcript jg309.t2 is derived from g7170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg310.t1 is derived from g7171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1561909	1570222	.	+	.	Ledus.S2G019200
Ledus.S2	AUGUSTUS	transcript	1561909	1570222	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	start_codon	1561909	1561911	.	+	0	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1561909	1562076	0.99	+	0	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1561909	1562076	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1562077	1562185	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1562186	1563309	1	+	0	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1562186	1563309	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1563310	1563435	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1563436	1563584	0.98	+	1	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1563436	1563584	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1563585	1563724	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1563725	1563948	1	+	2	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1563725	1563948	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1563949	1564067	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1564068	1566371	1	+	0	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1564068	1566371	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1566372	1566508	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1566509	1567654	0.88	+	0	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1566509	1567654	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1567655	1567761	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1567762	1567874	0.89	+	0	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1567762	1567874	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1567875	1567979	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1567980	1568157	0.99	+	1	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1567980	1568157	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1568158	1568294	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1568295	1568408	0.85	+	0	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1568295	1568408	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1568409	1568514	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1568515	1568622	1	+	0	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1568515	1568622	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1568623	1568706	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1568707	1568839	1	+	0	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1568707	1568839	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1568840	1568995	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1568996	1569192	1	+	2	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1568996	1569192	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1569193	1569329	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1569330	1569526	1	+	0	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1569330	1569526	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1569527	1569615	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1569616	1569678	0.76	+	1	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1569616	1569678	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1569679	1569796	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1569797	1569903	0.65	+	1	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1569797	1569903	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	intron	1569904	1570028	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	CDS	1570029	1570222	0.55	+	2	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	exon	1570029	1570222	.	+	.	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
Ledus.S2	AUGUSTUS	stop_codon	1570223	1570225	.	+	0	transcript_id "Ledus.S2G019200.t1"; gene_id "Ledus.S2G019200"
# This transcript jg11550.t2 is derived from g5168.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11551.t1 is derived from g5169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5240748	5242696	.	+	.	Ledus.S4G070700
Ledus.S4	AUGUSTUS	transcript	5240748	5242696	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	start_codon	5240748	5240750	.	+	0	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	CDS	5240748	5240842	0.99	+	0	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	exon	5240748	5240842	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	intron	5240843	5240947	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	CDS	5240948	5241437	1	+	1	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	exon	5240948	5241437	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	intron	5241438	5241520	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	CDS	5241521	5241656	0.83	+	0	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	exon	5241521	5241656	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	intron	5241657	5241758	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	CDS	5241759	5241792	0.99	+	2	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	exon	5241759	5241792	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	intron	5241793	5241919	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	CDS	5241920	5242009	1	+	1	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	exon	5241920	5242009	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	intron	5242010	5242099	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	CDS	5242100	5242160	1	+	1	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	exon	5242100	5242160	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	intron	5242161	5242254	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	CDS	5242255	5242327	1	+	0	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	exon	5242255	5242327	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	intron	5242328	5242476	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	CDS	5242477	5242559	1	+	2	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	exon	5242477	5242559	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	intron	5242560	5242636	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	CDS	5242637	5242696	1	+	0	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	exon	5242637	5242696	.	+	.	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
Ledus.S4	AUGUSTUS	stop_codon	5242697	5242699	.	+	0	transcript_id "Ledus.S4G070700.t1"; gene_id "Ledus.S4G070700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8528.t1 is derived from g9558.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	40786	42636	.	-	.	Ledus.S3G000500
Ledus.S3	AUGUSTUS	transcript	40786	42551	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	stop_codon	40783	40785	.	-	0	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	40786	40798	0.74	-	1	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	40786	40798	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	40799	40882	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	40883	40999	1	-	1	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	40883	40999	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	41000	41092	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	41093	41212	1	-	1	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	41093	41212	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	41213	41292	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	41293	41381	1	-	0	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	41293	41381	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	41382	41470	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	41471	41571	0.66	-	2	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	41471	41571	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	41572	41657	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	41658	41748	1	-	0	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	41658	41748	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	41749	41817	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	41818	41874	1	-	0	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	41818	41874	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	41875	41953	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	41954	42226	1	-	0	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	41954	42226	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	42227	42324	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	42325	42408	1	-	0	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	42325	42408	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	42409	42485	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	42486	42551	0.66	-	0	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	42486	42551	.	-	.	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	start_codon	42549	42551	.	-	0	transcript_id "Ledus.S3G000500.t1"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	transcript	40786	42636	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	stop_codon	40783	40785	.	-	0	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	40786	40798	0.76	-	1	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	40786	40798	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	40799	40882	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	40883	40999	1	-	1	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	40883	40999	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	41000	41092	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	41093	41212	1	-	1	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	41093	41212	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	41213	41292	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	41293	41381	1	-	0	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	41293	41381	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	41382	41470	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	41471	41571	0.65	-	2	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	41471	41571	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	41572	41657	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	41658	41748	1	-	0	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	41658	41748	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	41749	41817	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	41818	41874	1	-	0	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	41818	41874	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	41875	41953	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	41954	42226	1	-	0	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	41954	42226	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	42227	42324	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	42325	42425	0.76	-	2	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	42325	42425	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	intron	42426	42485	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	CDS	42486	42636	0.7	-	0	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	exon	42486	42636	.	-	.	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
Ledus.S3	AUGUSTUS	start_codon	42634	42636	.	-	0	transcript_id "Ledus.S3G000500.t2"; gene_id "Ledus.S3G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7160.t1 is derived from g6691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1891683	1891979	.	+	.	Ledus.C7G022100
Ledus.C7	AUGUSTUS	transcript	1891683	1891979	.	+	.	transcript_id "Ledus.C7G022100.t1"; gene_id "Ledus.C7G022100"
Ledus.C7	AUGUSTUS	start_codon	1891683	1891685	.	+	0	transcript_id "Ledus.C7G022100.t1"; gene_id "Ledus.C7G022100"
Ledus.C7	AUGUSTUS	CDS	1891683	1891979	0.83	+	0	transcript_id "Ledus.C7G022100.t1"; gene_id "Ledus.C7G022100"
Ledus.C7	AUGUSTUS	exon	1891683	1891979	.	+	.	transcript_id "Ledus.C7G022100.t1"; gene_id "Ledus.C7G022100"
Ledus.C7	AUGUSTUS	stop_codon	1891980	1891982	.	+	0	transcript_id "Ledus.C7G022100.t1"; gene_id "Ledus.C7G022100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4805.t1 is derived from g2243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19865008	19867813	.	+	.	Ledus.S1G222600
Ledus.S1	AUGUSTUS	transcript	19865008	19867813	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	start_codon	19865008	19865010	.	+	0	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	CDS	19865008	19865387	0.39	+	0	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	exon	19865008	19865387	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	intron	19865388	19865518	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	CDS	19865519	19865660	1	+	1	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	exon	19865519	19865660	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	intron	19865661	19865798	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	CDS	19865799	19866037	1	+	0	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	exon	19865799	19866037	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	intron	19866038	19866181	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	CDS	19866182	19866409	1	+	1	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	exon	19866182	19866409	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	intron	19866410	19866539	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	CDS	19866540	19866684	1	+	1	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	exon	19866540	19866684	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	intron	19866685	19866770	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	CDS	19866771	19866830	0.7	+	0	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	exon	19866771	19866830	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	intron	19866831	19866922	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	CDS	19866923	19867057	0.58	+	0	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	exon	19866923	19867057	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	intron	19867058	19867172	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	CDS	19867173	19867236	1	+	0	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	exon	19867173	19867236	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	intron	19867237	19867331	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	CDS	19867332	19867385	0.79	+	2	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	exon	19867332	19867385	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	intron	19867386	19867505	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	CDS	19867506	19867813	1	+	2	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	exon	19867506	19867813	.	+	.	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
Ledus.S1	AUGUSTUS	stop_codon	19867814	19867816	.	+	0	transcript_id "Ledus.S1G222600.t1"; gene_id "Ledus.S1G222600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10013.t1 is derived from g11043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11869840	11875371	.	+	.	Ledus.S3G149000
Ledus.S3	AUGUSTUS	transcript	11869840	11875371	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	start_codon	11869840	11869842	.	+	0	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	CDS	11869840	11870227	0.99	+	0	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	exon	11869840	11870227	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	intron	11870228	11870928	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	CDS	11870929	11871152	1	+	2	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	exon	11870929	11871152	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	intron	11871153	11871396	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	CDS	11871397	11871450	0.98	+	0	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	exon	11871397	11871450	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	intron	11871451	11871563	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	CDS	11871564	11871632	1	+	0	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	exon	11871564	11871632	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	intron	11871633	11871710	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	CDS	11871711	11873927	1	+	0	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	exon	11871711	11873927	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	intron	11873928	11874059	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	CDS	11874060	11874137	0.99	+	0	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	exon	11874060	11874137	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	intron	11874138	11874254	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	CDS	11874255	11874610	0.96	+	0	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	exon	11874255	11874610	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	intron	11874611	11874724	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	CDS	11874725	11874745	1	+	1	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	exon	11874725	11874745	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	intron	11874746	11874825	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	CDS	11874826	11874896	1	+	1	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	exon	11874826	11874896	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	intron	11874897	11875048	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	CDS	11875049	11875371	0.4	+	2	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	exon	11875049	11875371	.	+	.	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
Ledus.S3	AUGUSTUS	stop_codon	11875372	11875374	.	+	0	transcript_id "Ledus.S3G149000.t1"; gene_id "Ledus.S3G149000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3695.t1 is derived from g1131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10949774	10950970	.	-	.	Ledus.S1G111600
Ledus.S1	AUGUSTUS	transcript	10949774	10950970	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	stop_codon	10949771	10949773	.	-	0	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	CDS	10949774	10949789	1	-	1	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	exon	10949774	10949789	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	intron	10949790	10949912	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	CDS	10949913	10949977	1	-	0	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	exon	10949913	10949977	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	intron	10949978	10950072	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	CDS	10950073	10950193	1	-	1	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	exon	10950073	10950193	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	intron	10950194	10950287	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	CDS	10950288	10950496	1	-	0	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	exon	10950288	10950496	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	intron	10950497	10950596	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	CDS	10950597	10950667	1	-	2	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	exon	10950597	10950667	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	intron	10950668	10950752	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	CDS	10950753	10950801	1	-	0	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	exon	10950753	10950801	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	intron	10950802	10950967	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	CDS	10950968	10950970	0.79	-	0	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	exon	10950968	10950970	.	-	.	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
Ledus.S1	AUGUSTUS	start_codon	10950968	10950970	.	-	0	transcript_id "Ledus.S1G111600.t1"; gene_id "Ledus.S1G111600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12152.t1 is derived from g5771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10017044	10029033	.	-	.	Ledus.S4G130800
Ledus.S4	AUGUSTUS	transcript	10017044	10029033	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	stop_codon	10017041	10017043	.	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10017044	10018701	0.98	-	2	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10017044	10018701	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10018702	10018831	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10018832	10019810	0.37	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10018832	10019810	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10019811	10019906	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10019907	10020104	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10019907	10020104	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10020105	10020177	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10020178	10020235	1	-	1	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10020178	10020235	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10020236	10020382	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10020383	10020490	1	-	1	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10020383	10020490	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10020491	10020629	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10020630	10020727	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10020630	10020727	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10020728	10020832	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10020833	10020907	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10020833	10020907	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10020908	10021028	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10021029	10021107	0.99	-	1	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10021029	10021107	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10021108	10021214	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10021215	10021384	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10021215	10021384	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10021385	10021541	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10021542	10021649	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10021542	10021649	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10021650	10021731	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10021732	10021812	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10021732	10021812	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10021813	10021972	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10021973	10022089	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10021973	10022089	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10022090	10022311	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10022312	10022401	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10022312	10022401	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10022402	10022538	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10022539	10022664	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10022539	10022664	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10022665	10022753	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10022754	10022967	0.86	-	1	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10022754	10022967	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10022968	10023091	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10023092	10023264	0.56	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10023092	10023264	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10023265	10023395	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10023396	10023492	1	-	1	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10023396	10023492	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10023493	10023568	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10023569	10023625	1	-	1	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10023569	10023625	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10023626	10023955	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10023956	10023999	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10023956	10023999	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10024000	10024093	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10024094	10024258	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10024094	10024258	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10024259	10024342	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10024343	10024526	1	-	1	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10024343	10024526	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10024527	10024682	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10024683	10024868	1	-	1	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10024683	10024868	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10024869	10025064	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10025065	10025162	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10025065	10025162	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10025163	10025348	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10025349	10026502	0.99	-	2	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10025349	10026502	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10026503	10026578	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10026579	10026640	1	-	1	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10026579	10026640	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10026641	10026796	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10026797	10027122	0.99	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10026797	10027122	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10027123	10027419	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10027420	10027890	0.96	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10027420	10027890	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10027891	10028098	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10028099	10028555	1	-	1	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10028099	10028555	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10028556	10028769	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10028770	10028831	1	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10028770	10028831	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	intron	10028832	10028928	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	CDS	10028929	10029033	0.83	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	exon	10028929	10029033	.	-	.	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
Ledus.S4	AUGUSTUS	start_codon	10029031	10029033	.	-	0	transcript_id "Ledus.S4G130800.t1"; gene_id "Ledus.S4G130800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10055.t1 is derived from g11085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12224453	12225460	.	+	.	Ledus.S3G153200
Ledus.S3	AUGUSTUS	transcript	12224453	12225460	.	+	.	transcript_id "Ledus.S3G153200.t1"; gene_id "Ledus.S3G153200"
Ledus.S3	AUGUSTUS	start_codon	12224453	12224455	.	+	0	transcript_id "Ledus.S3G153200.t1"; gene_id "Ledus.S3G153200"
Ledus.S3	AUGUSTUS	CDS	12224453	12225460	1	+	0	transcript_id "Ledus.S3G153200.t1"; gene_id "Ledus.S3G153200"
Ledus.S3	AUGUSTUS	exon	12224453	12225460	.	+	.	transcript_id "Ledus.S3G153200.t1"; gene_id "Ledus.S3G153200"
Ledus.S3	AUGUSTUS	stop_codon	12225461	12225463	.	+	0	transcript_id "Ledus.S3G153200.t1"; gene_id "Ledus.S3G153200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5989.t1 is derived from g3432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28181930	28183518	.	-	.	Ledus.S1G341000
Ledus.S1	AUGUSTUS	transcript	28181930	28183518	.	-	.	transcript_id "Ledus.S1G341000.t1"; gene_id "Ledus.S1G341000"
Ledus.S1	AUGUSTUS	stop_codon	28181927	28181929	.	-	0	transcript_id "Ledus.S1G341000.t1"; gene_id "Ledus.S1G341000"
Ledus.S1	AUGUSTUS	CDS	28181930	28183320	0.94	-	2	transcript_id "Ledus.S1G341000.t1"; gene_id "Ledus.S1G341000"
Ledus.S1	AUGUSTUS	exon	28181930	28183320	.	-	.	transcript_id "Ledus.S1G341000.t1"; gene_id "Ledus.S1G341000"
Ledus.S1	AUGUSTUS	intron	28183321	28183418	.	-	.	transcript_id "Ledus.S1G341000.t1"; gene_id "Ledus.S1G341000"
Ledus.S1	AUGUSTUS	CDS	28183419	28183518	0.61	-	0	transcript_id "Ledus.S1G341000.t1"; gene_id "Ledus.S1G341000"
Ledus.S1	AUGUSTUS	exon	28183419	28183518	.	-	.	transcript_id "Ledus.S1G341000.t1"; gene_id "Ledus.S1G341000"
Ledus.S1	AUGUSTUS	start_codon	28183516	28183518	.	-	0	transcript_id "Ledus.S1G341000.t1"; gene_id "Ledus.S1G341000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8069.t1 is derived from g12740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9035900	9036379	.	-	.	Ledus.S5G084700
Ledus.S5	AUGUSTUS	transcript	9035900	9036379	.	-	.	transcript_id "Ledus.S5G084700.t1"; gene_id "Ledus.S5G084700"
Ledus.S5	AUGUSTUS	stop_codon	9035897	9035899	.	-	0	transcript_id "Ledus.S5G084700.t1"; gene_id "Ledus.S5G084700"
Ledus.S5	AUGUSTUS	CDS	9035900	9036033	0.99	-	2	transcript_id "Ledus.S5G084700.t1"; gene_id "Ledus.S5G084700"
Ledus.S5	AUGUSTUS	exon	9035900	9036033	.	-	.	transcript_id "Ledus.S5G084700.t1"; gene_id "Ledus.S5G084700"
Ledus.S5	AUGUSTUS	intron	9036034	9036193	.	-	.	transcript_id "Ledus.S5G084700.t1"; gene_id "Ledus.S5G084700"
Ledus.S5	AUGUSTUS	CDS	9036194	9036248	0.99	-	0	transcript_id "Ledus.S5G084700.t1"; gene_id "Ledus.S5G084700"
Ledus.S5	AUGUSTUS	exon	9036194	9036248	.	-	.	transcript_id "Ledus.S5G084700.t1"; gene_id "Ledus.S5G084700"
Ledus.S5	AUGUSTUS	intron	9036249	9036346	.	-	.	transcript_id "Ledus.S5G084700.t1"; gene_id "Ledus.S5G084700"
Ledus.S5	AUGUSTUS	CDS	9036347	9036379	0.79	-	0	transcript_id "Ledus.S5G084700.t1"; gene_id "Ledus.S5G084700"
Ledus.S5	AUGUSTUS	exon	9036347	9036379	.	-	.	transcript_id "Ledus.S5G084700.t1"; gene_id "Ledus.S5G084700"
Ledus.S5	AUGUSTUS	start_codon	9036377	9036379	.	-	0	transcript_id "Ledus.S5G084700.t1"; gene_id "Ledus.S5G084700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8301.t1 is derived from g12973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10598217	10599104	.	-	.	Ledus.S5G107900
Ledus.S5	AUGUSTUS	transcript	10598217	10599104	.	-	.	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	stop_codon	10598214	10598216	.	-	0	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	CDS	10598217	10598404	1	-	2	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	exon	10598217	10598404	.	-	.	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	intron	10598405	10598488	.	-	.	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	CDS	10598489	10598668	1	-	2	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	exon	10598489	10598668	.	-	.	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	intron	10598669	10598754	.	-	.	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	CDS	10598755	10598878	1	-	0	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	exon	10598755	10598878	.	-	.	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	intron	10598879	10598960	.	-	.	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	CDS	10598961	10599104	0.78	-	0	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	exon	10598961	10599104	.	-	.	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
Ledus.S5	AUGUSTUS	start_codon	10599102	10599104	.	-	0	transcript_id "Ledus.S5G107900.t1"; gene_id "Ledus.S5G107900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2824.t1 is derived from g258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3962210	3965761	.	-	.	Ledus.S1G024500
Ledus.S1	AUGUSTUS	transcript	3962210	3965761	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	stop_codon	3962207	3962209	.	-	0	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	CDS	3962210	3962428	1	-	0	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	exon	3962210	3962428	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	intron	3962429	3962518	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	CDS	3962519	3962597	0.61	-	1	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	exon	3962519	3962597	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	intron	3962598	3962736	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	CDS	3962737	3962939	0.99	-	0	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	exon	3962737	3962939	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	intron	3962940	3963103	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	CDS	3963104	3963208	1	-	0	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	exon	3963104	3963208	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	intron	3963209	3963301	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	CDS	3963302	3963420	1	-	2	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	exon	3963302	3963420	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	intron	3963421	3963595	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	CDS	3963596	3963628	1	-	2	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	exon	3963596	3963628	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	intron	3963629	3963930	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	CDS	3963931	3964041	1	-	2	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	exon	3963931	3964041	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	intron	3964042	3964136	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	CDS	3964137	3964392	0.97	-	0	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	exon	3964137	3964392	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	intron	3964393	3964601	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	CDS	3964602	3964733	1	-	0	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	exon	3964602	3964733	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	intron	3964734	3965159	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	CDS	3965160	3965351	0.82	-	0	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	exon	3965160	3965351	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	intron	3965352	3965439	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	CDS	3965440	3965613	0.68	-	0	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	exon	3965440	3965613	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	intron	3965614	3965728	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	CDS	3965729	3965761	0.42	-	0	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	exon	3965729	3965761	.	-	.	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
Ledus.S1	AUGUSTUS	start_codon	3965759	3965761	.	-	0	transcript_id "Ledus.S1G024500.t1"; gene_id "Ledus.S1G024500"
# This transcript jg9911.t2 is derived from g10941.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9911.t3 is derived from g10941.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9912.t1 is derived from g10942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11124351	11126271	.	+	.	Ledus.S3G138900
Ledus.S3	AUGUSTUS	transcript	11124351	11126271	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	start_codon	11124351	11124353	.	+	0	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	CDS	11124351	11124624	0.98	+	0	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	exon	11124351	11124624	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	intron	11124625	11124704	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	CDS	11124705	11124810	1	+	2	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	exon	11124705	11124810	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	intron	11124811	11124922	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	CDS	11124923	11125015	1	+	1	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	exon	11124923	11125015	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	intron	11125016	11125109	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	CDS	11125110	11125296	1	+	1	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	exon	11125110	11125296	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	intron	11125297	11125376	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	CDS	11125377	11125549	1	+	0	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	exon	11125377	11125549	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	intron	11125550	11125629	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	CDS	11125630	11125784	1	+	1	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	exon	11125630	11125784	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	intron	11125785	11125897	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	CDS	11125898	11126001	0.86	+	2	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	exon	11125898	11126001	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	intron	11126002	11126109	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	CDS	11126110	11126271	0.99	+	0	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	exon	11126110	11126271	.	+	.	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
Ledus.S3	AUGUSTUS	stop_codon	11126272	11126274	.	+	0	transcript_id "Ledus.S3G138900.t1"; gene_id "Ledus.S3G138900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6670.t1 is derived from g4113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33038127	33039863	.	-	.	Ledus.S1G409100
Ledus.S1	AUGUSTUS	transcript	33038127	33039863	.	-	.	transcript_id "Ledus.S1G409100.t1"; gene_id "Ledus.S1G409100"
Ledus.S1	AUGUSTUS	stop_codon	33038124	33038126	.	-	0	transcript_id "Ledus.S1G409100.t1"; gene_id "Ledus.S1G409100"
Ledus.S1	AUGUSTUS	CDS	33038127	33039863	0.8	-	0	transcript_id "Ledus.S1G409100.t1"; gene_id "Ledus.S1G409100"
Ledus.S1	AUGUSTUS	exon	33038127	33039863	.	-	.	transcript_id "Ledus.S1G409100.t1"; gene_id "Ledus.S1G409100"
Ledus.S1	AUGUSTUS	start_codon	33039861	33039863	.	-	0	transcript_id "Ledus.S1G409100.t1"; gene_id "Ledus.S1G409100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2138.t1 is derived from g9001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15060497	15061357	.	-	.	Ledus.S2G202000
Ledus.S2	AUGUSTUS	transcript	15060497	15061357	.	-	.	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	stop_codon	15060494	15060496	.	-	0	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	CDS	15060497	15060545	0.42	-	1	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	exon	15060497	15060545	.	-	.	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	intron	15060546	15060623	.	-	.	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	CDS	15060624	15060677	0.38	-	1	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	exon	15060624	15060677	.	-	.	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	intron	15060678	15060838	.	-	.	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	CDS	15060839	15060980	0.44	-	2	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	exon	15060839	15060980	.	-	.	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	intron	15060981	15061107	.	-	.	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	CDS	15061108	15061357	0.75	-	0	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	exon	15061108	15061357	.	-	.	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
Ledus.S2	AUGUSTUS	start_codon	15061355	15061357	.	-	0	transcript_id "Ledus.S2G202000.t1"; gene_id "Ledus.S2G202000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4082.t1 is derived from g1518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14521666	14522400	.	+	.	Ledus.S1G150300
Ledus.S1	AUGUSTUS	transcript	14521666	14522400	.	+	.	transcript_id "Ledus.S1G150300.t1"; gene_id "Ledus.S1G150300"
Ledus.S1	AUGUSTUS	start_codon	14521666	14521668	.	+	0	transcript_id "Ledus.S1G150300.t1"; gene_id "Ledus.S1G150300"
Ledus.S1	AUGUSTUS	CDS	14521666	14521826	0.92	+	0	transcript_id "Ledus.S1G150300.t1"; gene_id "Ledus.S1G150300"
Ledus.S1	AUGUSTUS	exon	14521666	14521826	.	+	.	transcript_id "Ledus.S1G150300.t1"; gene_id "Ledus.S1G150300"
Ledus.S1	AUGUSTUS	intron	14521827	14521925	.	+	.	transcript_id "Ledus.S1G150300.t1"; gene_id "Ledus.S1G150300"
Ledus.S1	AUGUSTUS	CDS	14521926	14522400	1	+	1	transcript_id "Ledus.S1G150300.t1"; gene_id "Ledus.S1G150300"
Ledus.S1	AUGUSTUS	exon	14521926	14522400	.	+	.	transcript_id "Ledus.S1G150300.t1"; gene_id "Ledus.S1G150300"
Ledus.S1	AUGUSTUS	stop_codon	14522401	14522403	.	+	0	transcript_id "Ledus.S1G150300.t1"; gene_id "Ledus.S1G150300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2106.t1 is derived from g8969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14762902	14764478	.	+	.	Ledus.S2G198800
Ledus.S2	AUGUSTUS	transcript	14762902	14764478	.	+	.	transcript_id "Ledus.S2G198800.t1"; gene_id "Ledus.S2G198800"
Ledus.S2	AUGUSTUS	start_codon	14762902	14762904	.	+	0	transcript_id "Ledus.S2G198800.t1"; gene_id "Ledus.S2G198800"
Ledus.S2	AUGUSTUS	CDS	14762902	14763225	0.49	+	0	transcript_id "Ledus.S2G198800.t1"; gene_id "Ledus.S2G198800"
Ledus.S2	AUGUSTUS	exon	14762902	14763225	.	+	.	transcript_id "Ledus.S2G198800.t1"; gene_id "Ledus.S2G198800"
Ledus.S2	AUGUSTUS	intron	14763226	14763368	.	+	.	transcript_id "Ledus.S2G198800.t1"; gene_id "Ledus.S2G198800"
Ledus.S2	AUGUSTUS	CDS	14763369	14763553	1	+	0	transcript_id "Ledus.S2G198800.t1"; gene_id "Ledus.S2G198800"
Ledus.S2	AUGUSTUS	exon	14763369	14763553	.	+	.	transcript_id "Ledus.S2G198800.t1"; gene_id "Ledus.S2G198800"
Ledus.S2	AUGUSTUS	intron	14763554	14763637	.	+	.	transcript_id "Ledus.S2G198800.t1"; gene_id "Ledus.S2G198800"
Ledus.S2	AUGUSTUS	CDS	14763638	14764478	1	+	1	transcript_id "Ledus.S2G198800.t1"; gene_id "Ledus.S2G198800"
Ledus.S2	AUGUSTUS	exon	14763638	14764478	.	+	.	transcript_id "Ledus.S2G198800.t1"; gene_id "Ledus.S2G198800"
Ledus.S2	AUGUSTUS	stop_codon	14764479	14764481	.	+	0	transcript_id "Ledus.S2G198800.t1"; gene_id "Ledus.S2G198800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11641.t1 is derived from g5260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5709032	5710600	.	+	.	Ledus.S4G079700
Ledus.S4	AUGUSTUS	transcript	5709032	5710600	.	+	.	transcript_id "Ledus.S4G079700.t1"; gene_id "Ledus.S4G079700"
Ledus.S4	AUGUSTUS	start_codon	5709032	5709034	.	+	0	transcript_id "Ledus.S4G079700.t1"; gene_id "Ledus.S4G079700"
Ledus.S4	AUGUSTUS	CDS	5709032	5710600	0.89	+	0	transcript_id "Ledus.S4G079700.t1"; gene_id "Ledus.S4G079700"
Ledus.S4	AUGUSTUS	exon	5709032	5710600	.	+	.	transcript_id "Ledus.S4G079700.t1"; gene_id "Ledus.S4G079700"
Ledus.S4	AUGUSTUS	stop_codon	5710601	5710603	.	+	0	transcript_id "Ledus.S4G079700.t1"; gene_id "Ledus.S4G079700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5633.t1 is derived from g3072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25452621	25454062	.	+	.	Ledus.S1G305400
Ledus.S1	AUGUSTUS	transcript	25452621	25454062	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	start_codon	25452621	25452623	.	+	0	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	CDS	25452621	25452771	0.99	+	0	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	exon	25452621	25452771	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	intron	25452772	25452867	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	CDS	25452868	25452947	1	+	2	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	exon	25452868	25452947	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	intron	25452948	25453030	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	CDS	25453031	25453183	1	+	0	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	exon	25453031	25453183	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	intron	25453184	25453263	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	CDS	25453264	25453410	1	+	0	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	exon	25453264	25453410	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	intron	25453411	25453509	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	CDS	25453510	25453662	1	+	0	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	exon	25453510	25453662	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	intron	25453663	25453788	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	CDS	25453789	25453911	1	+	0	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	exon	25453789	25453911	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	intron	25453912	25453984	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	CDS	25453985	25454062	1	+	0	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	exon	25453985	25454062	.	+	.	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
Ledus.S1	AUGUSTUS	stop_codon	25454063	25454065	.	+	0	transcript_id "Ledus.S1G305400.t1"; gene_id "Ledus.S1G305400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10203.t1 is derived from g11233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13543932	13547525	.	+	.	Ledus.S3G168000
Ledus.S3	AUGUSTUS	transcript	13543932	13547525	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	start_codon	13543932	13543934	.	+	0	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	CDS	13543932	13544302	0.95	+	0	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	exon	13543932	13544302	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	intron	13544303	13544386	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	CDS	13544387	13544597	1	+	1	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	exon	13544387	13544597	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	intron	13544598	13544673	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	CDS	13544674	13544784	1	+	0	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	exon	13544674	13544784	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	intron	13544785	13544856	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	CDS	13544857	13545549	0.76	+	0	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	exon	13544857	13545549	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	intron	13545550	13545834	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	CDS	13545835	13545984	0.3	+	0	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	exon	13545835	13545984	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	intron	13545985	13546064	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	CDS	13546065	13546152	0.94	+	0	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	exon	13546065	13546152	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	intron	13546153	13546226	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	CDS	13546227	13546742	0.69	+	2	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	exon	13546227	13546742	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	intron	13546743	13547001	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	CDS	13547002	13547264	0.73	+	2	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	exon	13547002	13547264	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	intron	13547265	13547351	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	CDS	13547352	13547525	0.6	+	0	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	exon	13547352	13547525	.	+	.	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
Ledus.S3	AUGUSTUS	stop_codon	13547526	13547528	.	+	0	transcript_id "Ledus.S3G168000.t1"; gene_id "Ledus.S3G168000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12194.t1 is derived from g5813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10238976	10241121	.	+	.	Ledus.S4G135000
Ledus.S4	AUGUSTUS	transcript	10238976	10241121	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	start_codon	10238976	10238978	.	+	0	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	CDS	10238976	10239107	0.93	+	0	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	exon	10238976	10239107	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	intron	10239108	10239569	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	CDS	10239570	10239757	1	+	0	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	exon	10239570	10239757	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	intron	10239758	10239854	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	CDS	10239855	10240041	1	+	1	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	exon	10239855	10240041	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	intron	10240042	10240124	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	CDS	10240125	10240286	1	+	0	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	exon	10240125	10240286	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	intron	10240287	10240377	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	CDS	10240378	10240449	1	+	0	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	exon	10240378	10240449	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	intron	10240450	10240516	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	CDS	10240517	10240738	1	+	0	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	exon	10240517	10240738	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	intron	10240739	10240813	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	CDS	10240814	10240989	1	+	0	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	exon	10240814	10240989	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	intron	10240990	10241060	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	CDS	10241061	10241121	1	+	1	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	exon	10241061	10241121	.	+	.	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
Ledus.S4	AUGUSTUS	stop_codon	10241122	10241124	.	+	0	transcript_id "Ledus.S4G135000.t1"; gene_id "Ledus.S4G135000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4451.t1 is derived from g1887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17165370	17166391	.	-	.	Ledus.S1G187200
Ledus.S1	AUGUSTUS	transcript	17165370	17166391	.	-	.	transcript_id "Ledus.S1G187200.t1"; gene_id "Ledus.S1G187200"
Ledus.S1	AUGUSTUS	stop_codon	17165367	17165369	.	-	0	transcript_id "Ledus.S1G187200.t1"; gene_id "Ledus.S1G187200"
Ledus.S1	AUGUSTUS	CDS	17165370	17165621	0.96	-	0	transcript_id "Ledus.S1G187200.t1"; gene_id "Ledus.S1G187200"
Ledus.S1	AUGUSTUS	exon	17165370	17165621	.	-	.	transcript_id "Ledus.S1G187200.t1"; gene_id "Ledus.S1G187200"
Ledus.S1	AUGUSTUS	intron	17165622	17165719	.	-	.	transcript_id "Ledus.S1G187200.t1"; gene_id "Ledus.S1G187200"
Ledus.S1	AUGUSTUS	CDS	17165720	17165884	1	-	0	transcript_id "Ledus.S1G187200.t1"; gene_id "Ledus.S1G187200"
Ledus.S1	AUGUSTUS	exon	17165720	17165884	.	-	.	transcript_id "Ledus.S1G187200.t1"; gene_id "Ledus.S1G187200"
Ledus.S1	AUGUSTUS	intron	17165885	17165971	.	-	.	transcript_id "Ledus.S1G187200.t1"; gene_id "Ledus.S1G187200"
Ledus.S1	AUGUSTUS	CDS	17165972	17166391	1	-	0	transcript_id "Ledus.S1G187200.t1"; gene_id "Ledus.S1G187200"
Ledus.S1	AUGUSTUS	exon	17165972	17166391	.	-	.	transcript_id "Ledus.S1G187200.t1"; gene_id "Ledus.S1G187200"
Ledus.S1	AUGUSTUS	start_codon	17166389	17166391	.	-	0	transcript_id "Ledus.S1G187200.t1"; gene_id "Ledus.S1G187200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3083.t1 is derived from g518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5791510	5794301	.	-	.	Ledus.S1G050400
Ledus.S1	AUGUSTUS	transcript	5791510	5794301	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	stop_codon	5791507	5791509	.	-	0	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	CDS	5791510	5791514	1	-	2	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	exon	5791510	5791514	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	intron	5791515	5791760	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	CDS	5791761	5791894	1	-	1	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	exon	5791761	5791894	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	intron	5791895	5791972	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	CDS	5791973	5792044	0.96	-	1	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	exon	5791973	5792044	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	intron	5792045	5792128	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	CDS	5792129	5792222	0.96	-	2	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	exon	5792129	5792222	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	intron	5792223	5792436	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	CDS	5792437	5792464	1	-	0	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	exon	5792437	5792464	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	intron	5792465	5792604	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	CDS	5792605	5792649	1	-	0	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	exon	5792605	5792649	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	intron	5792650	5792780	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	CDS	5792781	5792916	1	-	1	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	exon	5792781	5792916	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	intron	5792917	5793031	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	CDS	5793032	5793163	1	-	1	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	exon	5793032	5793163	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	intron	5793164	5793256	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	CDS	5793257	5793381	0.89	-	0	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	exon	5793257	5793381	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	intron	5793382	5793486	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	CDS	5793487	5793537	0.92	-	0	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	exon	5793487	5793537	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	intron	5793538	5793701	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	CDS	5793702	5794301	1	-	0	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	exon	5793702	5794301	.	-	.	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
Ledus.S1	AUGUSTUS	start_codon	5794299	5794301	.	-	0	transcript_id "Ledus.S1G050400.t1"; gene_id "Ledus.S1G050400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7717.t1 is derived from g12388.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5451796	5453675	.	+	.	Ledus.S5G049500
Ledus.S5	AUGUSTUS	transcript	5451796	5453675	.	+	.	transcript_id "Ledus.S5G049500.t1"; gene_id "Ledus.S5G049500"
Ledus.S5	AUGUSTUS	start_codon	5451796	5451798	.	+	0	transcript_id "Ledus.S5G049500.t1"; gene_id "Ledus.S5G049500"
Ledus.S5	AUGUSTUS	CDS	5451796	5451987	0.71	+	0	transcript_id "Ledus.S5G049500.t1"; gene_id "Ledus.S5G049500"
Ledus.S5	AUGUSTUS	exon	5451796	5451987	.	+	.	transcript_id "Ledus.S5G049500.t1"; gene_id "Ledus.S5G049500"
Ledus.S5	AUGUSTUS	intron	5451988	5452322	.	+	.	transcript_id "Ledus.S5G049500.t1"; gene_id "Ledus.S5G049500"
Ledus.S5	AUGUSTUS	CDS	5452323	5453675	0.87	+	0	transcript_id "Ledus.S5G049500.t1"; gene_id "Ledus.S5G049500"
Ledus.S5	AUGUSTUS	exon	5452323	5453675	.	+	.	transcript_id "Ledus.S5G049500.t1"; gene_id "Ledus.S5G049500"
Ledus.S5	AUGUSTUS	stop_codon	5453676	5453678	.	+	0	transcript_id "Ledus.S5G049500.t1"; gene_id "Ledus.S5G049500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11750.t1 is derived from g5369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6559261	6560052	.	+	.	Ledus.S4G090600
Ledus.S4	AUGUSTUS	transcript	6559261	6560052	.	+	.	transcript_id "Ledus.S4G090600.t1"; gene_id "Ledus.S4G090600"
Ledus.S4	AUGUSTUS	start_codon	6559261	6559263	.	+	0	transcript_id "Ledus.S4G090600.t1"; gene_id "Ledus.S4G090600"
Ledus.S4	AUGUSTUS	CDS	6559261	6559402	0.42	+	0	transcript_id "Ledus.S4G090600.t1"; gene_id "Ledus.S4G090600"
Ledus.S4	AUGUSTUS	exon	6559261	6559402	.	+	.	transcript_id "Ledus.S4G090600.t1"; gene_id "Ledus.S4G090600"
Ledus.S4	AUGUSTUS	intron	6559403	6559480	.	+	.	transcript_id "Ledus.S4G090600.t1"; gene_id "Ledus.S4G090600"
Ledus.S4	AUGUSTUS	CDS	6559481	6559773	0.74	+	2	transcript_id "Ledus.S4G090600.t1"; gene_id "Ledus.S4G090600"
Ledus.S4	AUGUSTUS	exon	6559481	6559773	.	+	.	transcript_id "Ledus.S4G090600.t1"; gene_id "Ledus.S4G090600"
Ledus.S4	AUGUSTUS	intron	6559774	6559890	.	+	.	transcript_id "Ledus.S4G090600.t1"; gene_id "Ledus.S4G090600"
Ledus.S4	AUGUSTUS	CDS	6559891	6560052	1	+	0	transcript_id "Ledus.S4G090600.t1"; gene_id "Ledus.S4G090600"
Ledus.S4	AUGUSTUS	exon	6559891	6560052	.	+	.	transcript_id "Ledus.S4G090600.t1"; gene_id "Ledus.S4G090600"
Ledus.S4	AUGUSTUS	stop_codon	6560053	6560055	.	+	0	transcript_id "Ledus.S4G090600.t1"; gene_id "Ledus.S4G090600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3043.t1 is derived from g478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5482083	5482355	.	-	.	Ledus.S1G046400
Ledus.S1	AUGUSTUS	transcript	5482083	5482355	.	-	.	transcript_id "Ledus.S1G046400.t1"; gene_id "Ledus.S1G046400"
Ledus.S1	AUGUSTUS	stop_codon	5482080	5482082	.	-	0	transcript_id "Ledus.S1G046400.t1"; gene_id "Ledus.S1G046400"
Ledus.S1	AUGUSTUS	CDS	5482083	5482355	0.59	-	0	transcript_id "Ledus.S1G046400.t1"; gene_id "Ledus.S1G046400"
Ledus.S1	AUGUSTUS	exon	5482083	5482355	.	-	.	transcript_id "Ledus.S1G046400.t1"; gene_id "Ledus.S1G046400"
Ledus.S1	AUGUSTUS	start_codon	5482353	5482355	.	-	0	transcript_id "Ledus.S1G046400.t1"; gene_id "Ledus.S1G046400"
# This transcript jg9833.t2 is derived from g10863.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9833.t3 is derived from g10863.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9834.t1 is derived from g10864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10378760	10379461	.	-	.	Ledus.S3G131100
Ledus.S3	AUGUSTUS	transcript	10378760	10379461	.	-	.	transcript_id "Ledus.S3G131100.t1"; gene_id "Ledus.S3G131100"
Ledus.S3	AUGUSTUS	stop_codon	10378757	10378759	.	-	0	transcript_id "Ledus.S3G131100.t1"; gene_id "Ledus.S3G131100"
Ledus.S3	AUGUSTUS	CDS	10378760	10379461	0.9	-	0	transcript_id "Ledus.S3G131100.t1"; gene_id "Ledus.S3G131100"
Ledus.S3	AUGUSTUS	exon	10378760	10379461	.	-	.	transcript_id "Ledus.S3G131100.t1"; gene_id "Ledus.S3G131100"
Ledus.S3	AUGUSTUS	start_codon	10379459	10379461	.	-	0	transcript_id "Ledus.S3G131100.t1"; gene_id "Ledus.S3G131100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6439.t1 is derived from g3882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31248282	31252495	.	+	.	Ledus.S1G386000
Ledus.S1	AUGUSTUS	transcript	31248282	31252495	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	start_codon	31248282	31248284	.	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31248282	31249157	0.99	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31248282	31249157	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31249158	31249292	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31249293	31249487	1	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31249293	31249487	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31249488	31249737	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31249738	31249818	1	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31249738	31249818	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31249819	31249922	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31249923	31249982	1	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31249923	31249982	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31249983	31250118	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31250119	31250213	1	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31250119	31250213	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31250214	31250471	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31250472	31250628	1	+	1	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31250472	31250628	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31250629	31250709	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31250710	31250835	1	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31250710	31250835	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31250836	31250951	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31250952	31251032	1	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31250952	31251032	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31251033	31251177	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31251178	31251268	1	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31251178	31251268	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31251269	31251376	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31251377	31251510	1	+	2	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31251377	31251510	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31251511	31251609	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31251610	31251681	1	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31251610	31251681	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31251682	31251760	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31251761	31251850	1	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31251761	31251850	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31251851	31251959	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31251960	31252063	1	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31251960	31252063	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31252064	31252171	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31252172	31252340	0.74	+	1	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31252172	31252340	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	intron	31252341	31252429	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	CDS	31252430	31252495	1	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	exon	31252430	31252495	.	+	.	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
Ledus.S1	AUGUSTUS	stop_codon	31252496	31252498	.	+	0	transcript_id "Ledus.S1G386000.t1"; gene_id "Ledus.S1G386000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6807.t1 is derived from g4251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34379535	34380191	.	-	.	Ledus.S1G422800
Ledus.S1	AUGUSTUS	transcript	34379535	34380191	.	-	.	transcript_id "Ledus.S1G422800.t1"; gene_id "Ledus.S1G422800"
Ledus.S1	AUGUSTUS	stop_codon	34379532	34379534	.	-	0	transcript_id "Ledus.S1G422800.t1"; gene_id "Ledus.S1G422800"
Ledus.S1	AUGUSTUS	CDS	34379535	34380191	0.99	-	0	transcript_id "Ledus.S1G422800.t1"; gene_id "Ledus.S1G422800"
Ledus.S1	AUGUSTUS	exon	34379535	34380191	.	-	.	transcript_id "Ledus.S1G422800.t1"; gene_id "Ledus.S1G422800"
Ledus.S1	AUGUSTUS	start_codon	34380189	34380191	.	-	0	transcript_id "Ledus.S1G422800.t1"; gene_id "Ledus.S1G422800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7588.t1 is derived from g12259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4235493	4235792	.	+	.	Ledus.S5G036600
Ledus.S5	AUGUSTUS	transcript	4235493	4235792	.	+	.	transcript_id "Ledus.S5G036600.t1"; gene_id "Ledus.S5G036600"
Ledus.S5	AUGUSTUS	start_codon	4235493	4235495	.	+	0	transcript_id "Ledus.S5G036600.t1"; gene_id "Ledus.S5G036600"
Ledus.S5	AUGUSTUS	CDS	4235493	4235792	0.51	+	0	transcript_id "Ledus.S5G036600.t1"; gene_id "Ledus.S5G036600"
Ledus.S5	AUGUSTUS	exon	4235493	4235792	.	+	.	transcript_id "Ledus.S5G036600.t1"; gene_id "Ledus.S5G036600"
Ledus.S5	AUGUSTUS	stop_codon	4235793	4235795	.	+	0	transcript_id "Ledus.S5G036600.t1"; gene_id "Ledus.S5G036600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2893.t1 is derived from g328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4425259	4428396	.	+	.	Ledus.S1G031400
Ledus.S1	AUGUSTUS	transcript	4425259	4428396	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	start_codon	4425259	4425261	.	+	0	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4425259	4425309	0.92	+	0	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4425259	4425309	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4425310	4425432	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4425433	4425595	0.99	+	0	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4425433	4425595	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4425596	4425715	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4425716	4425809	1	+	2	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4425716	4425809	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4425810	4425888	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4425889	4425974	1	+	1	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4425889	4425974	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4425975	4426056	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4426057	4426172	1	+	2	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4426057	4426172	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4426173	4426246	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4426247	4426327	1	+	0	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4426247	4426327	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4426328	4426434	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4426435	4426560	0.98	+	0	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4426435	4426560	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4426561	4426671	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4426672	4426954	0.98	+	0	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4426672	4426954	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4426955	4427045	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4427046	4427142	1	+	2	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4427046	4427142	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4427143	4427222	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4427223	4427379	1	+	1	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4427223	4427379	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4427380	4427515	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4427516	4427659	0.98	+	0	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4427516	4427659	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4427660	4427768	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4427769	4427837	1	+	0	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4427769	4427837	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4427838	4427933	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4427934	4428077	0.98	+	0	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4427934	4428077	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4428078	4428188	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4428189	4428242	1	+	0	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4428189	4428242	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	intron	4428243	4428327	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	CDS	4428328	4428396	1	+	0	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	exon	4428328	4428396	.	+	.	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
Ledus.S1	AUGUSTUS	stop_codon	4428397	4428399	.	+	0	transcript_id "Ledus.S1G031400.t1"; gene_id "Ledus.S1G031400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7069.t1 is derived from g6600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1189918	1192461	.	+	.	Ledus.C7G013000
Ledus.C7	AUGUSTUS	transcript	1189918	1192461	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	start_codon	1189918	1189920	.	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	CDS	1189918	1190134	0.81	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	exon	1189918	1190134	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	intron	1190135	1190252	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	CDS	1190253	1190350	0.99	+	2	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	exon	1190253	1190350	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	intron	1190351	1190438	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	CDS	1190439	1190498	1	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	exon	1190439	1190498	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	intron	1190499	1190625	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	CDS	1190626	1190739	1	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	exon	1190626	1190739	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	intron	1190740	1190881	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	CDS	1190882	1190947	1	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	exon	1190882	1190947	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	intron	1190948	1191056	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	CDS	1191057	1191164	1	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	exon	1191057	1191164	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	intron	1191165	1191253	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	CDS	1191254	1191337	1	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	exon	1191254	1191337	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	intron	1191338	1191480	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	CDS	1191481	1191582	1	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	exon	1191481	1191582	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	intron	1191583	1191711	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	CDS	1191712	1191825	1	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	exon	1191712	1191825	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	intron	1191826	1191953	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	CDS	1191954	1192034	1	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	exon	1191954	1192034	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	intron	1192035	1192166	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	CDS	1192167	1192286	1	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	exon	1192167	1192286	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	intron	1192287	1192368	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	CDS	1192369	1192461	0.86	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	exon	1192369	1192461	.	+	.	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
Ledus.C7	AUGUSTUS	stop_codon	1192462	1192464	.	+	0	transcript_id "Ledus.C7G013000.t1"; gene_id "Ledus.C7G013000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6877.t1 is derived from g4321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34917041	34918237	.	+	.	Ledus.S1G429800
Ledus.S1	AUGUSTUS	transcript	34917041	34918237	.	+	.	transcript_id "Ledus.S1G429800.t1"; gene_id "Ledus.S1G429800"
Ledus.S1	AUGUSTUS	start_codon	34917041	34917043	.	+	0	transcript_id "Ledus.S1G429800.t1"; gene_id "Ledus.S1G429800"
Ledus.S1	AUGUSTUS	CDS	34917041	34917113	0.93	+	0	transcript_id "Ledus.S1G429800.t1"; gene_id "Ledus.S1G429800"
Ledus.S1	AUGUSTUS	exon	34917041	34917113	.	+	.	transcript_id "Ledus.S1G429800.t1"; gene_id "Ledus.S1G429800"
Ledus.S1	AUGUSTUS	intron	34917114	34917194	.	+	.	transcript_id "Ledus.S1G429800.t1"; gene_id "Ledus.S1G429800"
Ledus.S1	AUGUSTUS	CDS	34917195	34918237	1	+	2	transcript_id "Ledus.S1G429800.t1"; gene_id "Ledus.S1G429800"
Ledus.S1	AUGUSTUS	exon	34917195	34918237	.	+	.	transcript_id "Ledus.S1G429800.t1"; gene_id "Ledus.S1G429800"
Ledus.S1	AUGUSTUS	stop_codon	34918238	34918240	.	+	0	transcript_id "Ledus.S1G429800.t1"; gene_id "Ledus.S1G429800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2541.t1 is derived from g9404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18804238	18805375	.	+	.	Ledus.S2G242300
Ledus.S2	AUGUSTUS	transcript	18804238	18805375	.	+	.	transcript_id "Ledus.S2G242300.t1"; gene_id "Ledus.S2G242300"
Ledus.S2	AUGUSTUS	start_codon	18804238	18804240	.	+	0	transcript_id "Ledus.S2G242300.t1"; gene_id "Ledus.S2G242300"
Ledus.S2	AUGUSTUS	CDS	18804238	18805293	0.72	+	0	transcript_id "Ledus.S2G242300.t1"; gene_id "Ledus.S2G242300"
Ledus.S2	AUGUSTUS	exon	18804238	18805293	.	+	.	transcript_id "Ledus.S2G242300.t1"; gene_id "Ledus.S2G242300"
Ledus.S2	AUGUSTUS	intron	18805294	18805354	.	+	.	transcript_id "Ledus.S2G242300.t1"; gene_id "Ledus.S2G242300"
Ledus.S2	AUGUSTUS	CDS	18805355	18805375	0.96	+	0	transcript_id "Ledus.S2G242300.t1"; gene_id "Ledus.S2G242300"
Ledus.S2	AUGUSTUS	exon	18805355	18805375	.	+	.	transcript_id "Ledus.S2G242300.t1"; gene_id "Ledus.S2G242300"
Ledus.S2	AUGUSTUS	stop_codon	18805376	18805378	.	+	0	transcript_id "Ledus.S2G242300.t1"; gene_id "Ledus.S2G242300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9254.t1 is derived from g10284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5623001	5625850	.	-	.	Ledus.S3G073100
Ledus.S3	AUGUSTUS	transcript	5623001	5625850	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	stop_codon	5622998	5623000	.	-	0	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	CDS	5623001	5623255	0.86	-	0	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	exon	5623001	5623255	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	intron	5623256	5623399	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	CDS	5623400	5623457	0.71	-	1	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	exon	5623400	5623457	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	intron	5623458	5623549	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	CDS	5623550	5623635	0.97	-	0	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	exon	5623550	5623635	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	intron	5623636	5623821	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	CDS	5623822	5623930	1	-	1	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	exon	5623822	5623930	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	intron	5623931	5624032	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	CDS	5624033	5624101	1	-	1	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	exon	5624033	5624101	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	intron	5624102	5624190	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	CDS	5624191	5624335	1	-	2	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	exon	5624191	5624335	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	intron	5624336	5624483	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	CDS	5624484	5624648	1	-	2	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	exon	5624484	5624648	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	intron	5624649	5624732	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	CDS	5624733	5624794	1	-	1	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	exon	5624733	5624794	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	intron	5624795	5624911	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	CDS	5624912	5625038	1	-	2	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	exon	5624912	5625038	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	intron	5625039	5625708	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	CDS	5625709	5625850	0.62	-	0	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	exon	5625709	5625850	.	-	.	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
Ledus.S3	AUGUSTUS	start_codon	5625848	5625850	.	-	0	transcript_id "Ledus.S3G073100.t1"; gene_id "Ledus.S3G073100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12471.t1 is derived from g6092.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12185183	12186658	.	-	.	Ledus.S4G162700
Ledus.S4	AUGUSTUS	transcript	12185183	12186658	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	stop_codon	12185180	12185182	.	-	0	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	CDS	12185183	12185350	0.99	-	0	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	exon	12185183	12185350	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	intron	12185351	12185440	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	CDS	12185441	12185536	1	-	0	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	exon	12185441	12185536	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	intron	12185537	12185702	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	CDS	12185703	12185777	1	-	0	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	exon	12185703	12185777	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	intron	12185778	12185854	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	CDS	12185855	12185995	1	-	0	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	exon	12185855	12185995	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	intron	12185996	12186078	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	CDS	12186079	12186141	1	-	0	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	exon	12186079	12186141	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	intron	12186142	12186217	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	CDS	12186218	12186263	1	-	1	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	exon	12186218	12186263	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	intron	12186264	12186341	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	CDS	12186342	12186487	1	-	0	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	exon	12186342	12186487	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	intron	12186488	12186574	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	CDS	12186575	12186658	0.81	-	0	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	exon	12186575	12186658	.	-	.	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
Ledus.S4	AUGUSTUS	start_codon	12186656	12186658	.	-	0	transcript_id "Ledus.S4G162700.t1"; gene_id "Ledus.S4G162700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5575.t1 is derived from g3014.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25225543	25226268	.	-	.	Ledus.S1G299600
Ledus.S1	AUGUSTUS	transcript	25225543	25226268	.	-	.	transcript_id "Ledus.S1G299600.t1"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	stop_codon	25225540	25225542	.	-	0	transcript_id "Ledus.S1G299600.t1"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	CDS	25225543	25225776	1	-	0	transcript_id "Ledus.S1G299600.t1"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	exon	25225543	25225776	.	-	.	transcript_id "Ledus.S1G299600.t1"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	intron	25225777	25225862	.	-	.	transcript_id "Ledus.S1G299600.t1"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	CDS	25225863	25225988	1	-	0	transcript_id "Ledus.S1G299600.t1"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	exon	25225863	25225988	.	-	.	transcript_id "Ledus.S1G299600.t1"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	intron	25225989	25226061	.	-	.	transcript_id "Ledus.S1G299600.t1"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	CDS	25226062	25226268	0.89	-	0	transcript_id "Ledus.S1G299600.t1"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	exon	25226062	25226268	.	-	.	transcript_id "Ledus.S1G299600.t1"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	start_codon	25226266	25226268	.	-	0	transcript_id "Ledus.S1G299600.t1"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	transcript	25225543	25226268	.	-	.	transcript_id "Ledus.S1G299600.t2"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	stop_codon	25225540	25225542	.	-	0	transcript_id "Ledus.S1G299600.t2"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	CDS	25225543	25225770	0.87	-	0	transcript_id "Ledus.S1G299600.t2"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	exon	25225543	25225770	.	-	.	transcript_id "Ledus.S1G299600.t2"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	intron	25225771	25225862	.	-	.	transcript_id "Ledus.S1G299600.t2"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	CDS	25225863	25225988	1	-	0	transcript_id "Ledus.S1G299600.t2"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	exon	25225863	25225988	.	-	.	transcript_id "Ledus.S1G299600.t2"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	intron	25225989	25226061	.	-	.	transcript_id "Ledus.S1G299600.t2"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	CDS	25226062	25226268	0.89	-	0	transcript_id "Ledus.S1G299600.t2"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	exon	25226062	25226268	.	-	.	transcript_id "Ledus.S1G299600.t2"; gene_id "Ledus.S1G299600"
Ledus.S1	AUGUSTUS	start_codon	25226266	25226268	.	-	0	transcript_id "Ledus.S1G299600.t2"; gene_id "Ledus.S1G299600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9077.t1 is derived from g10107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4383374	4392737	.	-	.	Ledus.S3G055400
Ledus.S3	AUGUSTUS	transcript	4383374	4392737	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	stop_codon	4383371	4383373	.	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4383374	4383636	0.34	-	2	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4383374	4383636	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4383637	4383776	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4383777	4384014	1	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4383777	4384014	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4384015	4384103	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4384104	4384446	0.86	-	1	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4384104	4384446	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4384447	4384552	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4384553	4384745	0.86	-	2	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4384553	4384745	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4384746	4384885	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4384886	4385171	1	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4384886	4385171	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4385172	4385266	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4385267	4385350	1	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4385267	4385350	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4385351	4385474	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4385475	4385714	0.97	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4385475	4385714	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4385715	4385889	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4385890	4386347	1	-	2	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4385890	4386347	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4386348	4386441	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4386442	4386739	0.99	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4386442	4386739	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4386740	4386910	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4386911	4387060	0.63	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4386911	4387060	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4387061	4387156	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4387157	4387191	0.91	-	2	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4387157	4387191	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4387192	4387321	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4387322	4387538	1	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4387322	4387538	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4387539	4387709	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4387710	4387940	1	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4387710	4387940	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4387941	4388057	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4388058	4388262	1	-	1	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4388058	4388262	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4388263	4388335	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4388336	4388628	0.93	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4388336	4388628	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4388629	4389060	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4389061	4389110	0.7	-	2	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4389061	4389110	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4389111	4389402	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4389403	4389467	0.98	-	1	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4389403	4389467	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4389468	4389563	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4389564	4389573	0.88	-	2	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4389564	4389573	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4389574	4389659	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4389660	4389718	1	-	1	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4389660	4389718	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4389719	4389813	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4389814	4389878	0.84	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4389814	4389878	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4389879	4390281	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4390282	4390302	0.77	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4390282	4390302	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4390303	4390490	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4390491	4390619	0.89	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4390491	4390619	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4390620	4390813	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4390814	4391026	0.88	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4390814	4391026	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4391027	4391117	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4391118	4391159	1	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4391118	4391159	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4391160	4391274	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4391275	4391367	0.85	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4391275	4391367	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4391368	4391599	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4391600	4391658	1	-	2	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4391600	4391658	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4391659	4391797	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4391798	4392101	1	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4391798	4392101	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4392102	4392179	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4392180	4392392	0.95	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4392180	4392392	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	intron	4392393	4392512	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	CDS	4392513	4392737	0.5	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	exon	4392513	4392737	.	-	.	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
Ledus.S3	AUGUSTUS	start_codon	4392735	4392737	.	-	0	transcript_id "Ledus.S3G055400.t1"; gene_id "Ledus.S3G055400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4970.t1 is derived from g2408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20927094	20928482	.	+	.	Ledus.S1G239100
Ledus.S1	AUGUSTUS	transcript	20927094	20928482	.	+	.	transcript_id "Ledus.S1G239100.t1"; gene_id "Ledus.S1G239100"
Ledus.S1	AUGUSTUS	start_codon	20927094	20927096	.	+	0	transcript_id "Ledus.S1G239100.t1"; gene_id "Ledus.S1G239100"
Ledus.S1	AUGUSTUS	CDS	20927094	20928482	0.99	+	0	transcript_id "Ledus.S1G239100.t1"; gene_id "Ledus.S1G239100"
Ledus.S1	AUGUSTUS	exon	20927094	20928482	.	+	.	transcript_id "Ledus.S1G239100.t1"; gene_id "Ledus.S1G239100"
Ledus.S1	AUGUSTUS	stop_codon	20928483	20928485	.	+	0	transcript_id "Ledus.S1G239100.t1"; gene_id "Ledus.S1G239100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7130.t1 is derived from g6661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1701152	1704610	.	+	.	Ledus.C7G019100
Ledus.C7	AUGUSTUS	transcript	1701152	1704610	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	start_codon	1701152	1701154	.	+	0	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	CDS	1701152	1701368	1	+	0	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	exon	1701152	1701368	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	intron	1701369	1701517	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	CDS	1701518	1701654	0.99	+	2	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	exon	1701518	1701654	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	intron	1701655	1701739	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	CDS	1701740	1701965	1	+	0	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	exon	1701740	1701965	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	intron	1701966	1702056	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	CDS	1702057	1702302	0.99	+	2	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	exon	1702057	1702302	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	intron	1702303	1702407	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	CDS	1702408	1702458	0.6	+	2	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	exon	1702408	1702458	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	intron	1702459	1702602	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	CDS	1702603	1702651	0.39	+	2	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	exon	1702603	1702651	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	intron	1702652	1702787	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	CDS	1702788	1702852	0.58	+	1	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	exon	1702788	1702852	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	intron	1702853	1702961	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	CDS	1702962	1703014	1	+	2	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	exon	1702962	1703014	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	intron	1703015	1703184	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	CDS	1703185	1703554	0.98	+	0	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	exon	1703185	1703554	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	intron	1703555	1703666	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	CDS	1703667	1704610	0.94	+	2	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	exon	1703667	1704610	.	+	.	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
Ledus.C7	AUGUSTUS	stop_codon	1704611	1704613	.	+	0	transcript_id "Ledus.C7G019100.t1"; gene_id "Ledus.C7G019100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4121.t1 is derived from g1557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14789341	14790616	.	-	.	Ledus.S1G154200
Ledus.S1	AUGUSTUS	transcript	14789341	14790616	.	-	.	transcript_id "Ledus.S1G154200.t1"; gene_id "Ledus.S1G154200"
Ledus.S1	AUGUSTUS	stop_codon	14789338	14789340	.	-	0	transcript_id "Ledus.S1G154200.t1"; gene_id "Ledus.S1G154200"
Ledus.S1	AUGUSTUS	CDS	14789341	14789613	1	-	0	transcript_id "Ledus.S1G154200.t1"; gene_id "Ledus.S1G154200"
Ledus.S1	AUGUSTUS	exon	14789341	14789613	.	-	.	transcript_id "Ledus.S1G154200.t1"; gene_id "Ledus.S1G154200"
Ledus.S1	AUGUSTUS	intron	14789614	14789701	.	-	.	transcript_id "Ledus.S1G154200.t1"; gene_id "Ledus.S1G154200"
Ledus.S1	AUGUSTUS	CDS	14789702	14789887	0.95	-	0	transcript_id "Ledus.S1G154200.t1"; gene_id "Ledus.S1G154200"
Ledus.S1	AUGUSTUS	exon	14789702	14789887	.	-	.	transcript_id "Ledus.S1G154200.t1"; gene_id "Ledus.S1G154200"
Ledus.S1	AUGUSTUS	intron	14789888	14789995	.	-	.	transcript_id "Ledus.S1G154200.t1"; gene_id "Ledus.S1G154200"
Ledus.S1	AUGUSTUS	CDS	14789996	14790616	0.3	-	0	transcript_id "Ledus.S1G154200.t1"; gene_id "Ledus.S1G154200"
Ledus.S1	AUGUSTUS	exon	14789996	14790616	.	-	.	transcript_id "Ledus.S1G154200.t1"; gene_id "Ledus.S1G154200"
Ledus.S1	AUGUSTUS	start_codon	14790614	14790616	.	-	0	transcript_id "Ledus.S1G154200.t1"; gene_id "Ledus.S1G154200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5169.t1 is derived from g2608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22140452	22140841	.	+	.	Ledus.S1G259000
Ledus.S1	AUGUSTUS	transcript	22140452	22140841	.	+	.	transcript_id "Ledus.S1G259000.t1"; gene_id "Ledus.S1G259000"
Ledus.S1	AUGUSTUS	start_codon	22140452	22140454	.	+	0	transcript_id "Ledus.S1G259000.t1"; gene_id "Ledus.S1G259000"
Ledus.S1	AUGUSTUS	CDS	22140452	22140580	0.91	+	0	transcript_id "Ledus.S1G259000.t1"; gene_id "Ledus.S1G259000"
Ledus.S1	AUGUSTUS	exon	22140452	22140580	.	+	.	transcript_id "Ledus.S1G259000.t1"; gene_id "Ledus.S1G259000"
Ledus.S1	AUGUSTUS	intron	22140581	22140772	.	+	.	transcript_id "Ledus.S1G259000.t1"; gene_id "Ledus.S1G259000"
Ledus.S1	AUGUSTUS	CDS	22140773	22140841	0.91	+	0	transcript_id "Ledus.S1G259000.t1"; gene_id "Ledus.S1G259000"
Ledus.S1	AUGUSTUS	exon	22140773	22140841	.	+	.	transcript_id "Ledus.S1G259000.t1"; gene_id "Ledus.S1G259000"
Ledus.S1	AUGUSTUS	stop_codon	22140842	22140844	.	+	0	transcript_id "Ledus.S1G259000.t1"; gene_id "Ledus.S1G259000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3077.t1 is derived from g512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5738870	5740099	.	+	.	Ledus.S1G049800
Ledus.S1	AUGUSTUS	transcript	5738870	5740099	.	+	.	transcript_id "Ledus.S1G049800.t1"; gene_id "Ledus.S1G049800"
Ledus.S1	AUGUSTUS	start_codon	5738870	5738872	.	+	0	transcript_id "Ledus.S1G049800.t1"; gene_id "Ledus.S1G049800"
Ledus.S1	AUGUSTUS	CDS	5738870	5740099	1	+	0	transcript_id "Ledus.S1G049800.t1"; gene_id "Ledus.S1G049800"
Ledus.S1	AUGUSTUS	exon	5738870	5740099	.	+	.	transcript_id "Ledus.S1G049800.t1"; gene_id "Ledus.S1G049800"
Ledus.S1	AUGUSTUS	stop_codon	5740100	5740102	.	+	0	transcript_id "Ledus.S1G049800.t1"; gene_id "Ledus.S1G049800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3324.t1 is derived from g759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7459164	7459723	.	+	.	Ledus.S1G074500
Ledus.S1	AUGUSTUS	transcript	7459164	7459723	.	+	.	transcript_id "Ledus.S1G074500.t1"; gene_id "Ledus.S1G074500"
Ledus.S1	AUGUSTUS	start_codon	7459164	7459166	.	+	0	transcript_id "Ledus.S1G074500.t1"; gene_id "Ledus.S1G074500"
Ledus.S1	AUGUSTUS	CDS	7459164	7459285	0.26	+	0	transcript_id "Ledus.S1G074500.t1"; gene_id "Ledus.S1G074500"
Ledus.S1	AUGUSTUS	exon	7459164	7459285	.	+	.	transcript_id "Ledus.S1G074500.t1"; gene_id "Ledus.S1G074500"
Ledus.S1	AUGUSTUS	intron	7459286	7459431	.	+	.	transcript_id "Ledus.S1G074500.t1"; gene_id "Ledus.S1G074500"
Ledus.S1	AUGUSTUS	CDS	7459432	7459723	0.2	+	1	transcript_id "Ledus.S1G074500.t1"; gene_id "Ledus.S1G074500"
Ledus.S1	AUGUSTUS	exon	7459432	7459723	.	+	.	transcript_id "Ledus.S1G074500.t1"; gene_id "Ledus.S1G074500"
Ledus.S1	AUGUSTUS	stop_codon	7459724	7459726	.	+	0	transcript_id "Ledus.S1G074500.t1"; gene_id "Ledus.S1G074500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1674.t1 is derived from g8535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11795939	11797807	.	+	.	Ledus.S2G155600
Ledus.S2	AUGUSTUS	transcript	11795939	11797807	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	start_codon	11795939	11795941	.	+	0	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	CDS	11795939	11796229	0.51	+	0	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	exon	11795939	11796229	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	intron	11796230	11796382	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	CDS	11796383	11796485	0.93	+	0	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	exon	11796383	11796485	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	intron	11796486	11796598	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	CDS	11796599	11796666	1	+	2	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	exon	11796599	11796666	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	intron	11796667	11796938	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	CDS	11796939	11797133	1	+	0	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	exon	11796939	11797133	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	intron	11797134	11797393	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	CDS	11797394	11797510	0.88	+	0	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	exon	11797394	11797510	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	intron	11797511	11797613	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	CDS	11797614	11797676	0.89	+	0	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	exon	11797614	11797676	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	intron	11797677	11797774	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	CDS	11797775	11797807	0.89	+	0	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	exon	11797775	11797807	.	+	.	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
Ledus.S2	AUGUSTUS	stop_codon	11797808	11797810	.	+	0	transcript_id "Ledus.S2G155600.t1"; gene_id "Ledus.S2G155600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3216.t1 is derived from g651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6955665	6956218	.	-	.	Ledus.S1G063700
Ledus.S1	AUGUSTUS	transcript	6955665	6956218	.	-	.	transcript_id "Ledus.S1G063700.t1"; gene_id "Ledus.S1G063700"
Ledus.S1	AUGUSTUS	stop_codon	6955662	6955664	.	-	0	transcript_id "Ledus.S1G063700.t1"; gene_id "Ledus.S1G063700"
Ledus.S1	AUGUSTUS	CDS	6955665	6955757	0.82	-	0	transcript_id "Ledus.S1G063700.t1"; gene_id "Ledus.S1G063700"
Ledus.S1	AUGUSTUS	exon	6955665	6955757	.	-	.	transcript_id "Ledus.S1G063700.t1"; gene_id "Ledus.S1G063700"
Ledus.S1	AUGUSTUS	intron	6955758	6955867	.	-	.	transcript_id "Ledus.S1G063700.t1"; gene_id "Ledus.S1G063700"
Ledus.S1	AUGUSTUS	CDS	6955868	6956218	0.63	-	0	transcript_id "Ledus.S1G063700.t1"; gene_id "Ledus.S1G063700"
Ledus.S1	AUGUSTUS	exon	6955868	6956218	.	-	.	transcript_id "Ledus.S1G063700.t1"; gene_id "Ledus.S1G063700"
Ledus.S1	AUGUSTUS	start_codon	6956216	6956218	.	-	0	transcript_id "Ledus.S1G063700.t1"; gene_id "Ledus.S1G063700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4403.t1 is derived from g1839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16908181	16911181	.	+	.	Ledus.S1G182400
Ledus.S1	AUGUSTUS	transcript	16908181	16911181	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	start_codon	16908181	16908183	.	+	0	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16908181	16908531	0.9	+	0	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16908181	16908531	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16908532	16908637	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16908638	16909012	1	+	0	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16908638	16909012	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16909013	16909109	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16909110	16909279	1	+	0	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16909110	16909279	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16909280	16909367	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16909368	16909465	1	+	1	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16909368	16909465	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16909466	16909562	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16909563	16909913	1	+	2	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16909563	16909913	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16909914	16910059	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16910060	16910461	1	+	2	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16910060	16910461	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16910462	16910537	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16910538	16911181	1	+	2	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16910538	16911181	.	+	.	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	stop_codon	16911182	16911184	.	+	0	transcript_id "Ledus.S1G182400.t1"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	transcript	16908181	16911181	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	start_codon	16908181	16908183	.	+	0	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16908181	16908531	0.85	+	0	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16908181	16908531	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16908532	16908637	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16908638	16909012	0.99	+	0	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16908638	16909012	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16909013	16909109	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16909110	16909279	1	+	0	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16909110	16909279	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16909280	16909367	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16909368	16909465	1	+	1	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16909368	16909465	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16909466	16909562	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16909563	16909913	0.68	+	2	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16909563	16909913	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16909914	16910049	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16910050	16910059	0.47	+	2	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16910050	16910059	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16910060	16910150	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16910151	16910461	0.79	+	1	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16910151	16910461	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	intron	16910462	16910537	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	CDS	16910538	16911181	1	+	2	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	exon	16910538	16911181	.	+	.	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
Ledus.S1	AUGUSTUS	stop_codon	16911182	16911184	.	+	0	transcript_id "Ledus.S1G182400.t2"; gene_id "Ledus.S1G182400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6108.t1 is derived from g3551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28942643	28943388	.	-	.	Ledus.S1G352900
Ledus.S1	AUGUSTUS	transcript	28942643	28943388	.	-	.	transcript_id "Ledus.S1G352900.t1"; gene_id "Ledus.S1G352900"
Ledus.S1	AUGUSTUS	stop_codon	28942640	28942642	.	-	0	transcript_id "Ledus.S1G352900.t1"; gene_id "Ledus.S1G352900"
Ledus.S1	AUGUSTUS	CDS	28942643	28943056	0.96	-	0	transcript_id "Ledus.S1G352900.t1"; gene_id "Ledus.S1G352900"
Ledus.S1	AUGUSTUS	exon	28942643	28943056	.	-	.	transcript_id "Ledus.S1G352900.t1"; gene_id "Ledus.S1G352900"
Ledus.S1	AUGUSTUS	intron	28943057	28943331	.	-	.	transcript_id "Ledus.S1G352900.t1"; gene_id "Ledus.S1G352900"
Ledus.S1	AUGUSTUS	CDS	28943332	28943388	0.91	-	0	transcript_id "Ledus.S1G352900.t1"; gene_id "Ledus.S1G352900"
Ledus.S1	AUGUSTUS	exon	28943332	28943388	.	-	.	transcript_id "Ledus.S1G352900.t1"; gene_id "Ledus.S1G352900"
Ledus.S1	AUGUSTUS	start_codon	28943386	28943388	.	-	0	transcript_id "Ledus.S1G352900.t1"; gene_id "Ledus.S1G352900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg726.t1 is derived from g7587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4490965	4491759	.	-	.	Ledus.S2G060800
Ledus.S2	AUGUSTUS	transcript	4490965	4491759	.	-	.	transcript_id "Ledus.S2G060800.t1"; gene_id "Ledus.S2G060800"
Ledus.S2	AUGUSTUS	stop_codon	4490962	4490964	.	-	0	transcript_id "Ledus.S2G060800.t1"; gene_id "Ledus.S2G060800"
Ledus.S2	AUGUSTUS	CDS	4490965	4491250	0.52	-	1	transcript_id "Ledus.S2G060800.t1"; gene_id "Ledus.S2G060800"
Ledus.S2	AUGUSTUS	exon	4490965	4491250	.	-	.	transcript_id "Ledus.S2G060800.t1"; gene_id "Ledus.S2G060800"
Ledus.S2	AUGUSTUS	intron	4491251	4491394	.	-	.	transcript_id "Ledus.S2G060800.t1"; gene_id "Ledus.S2G060800"
Ledus.S2	AUGUSTUS	CDS	4491395	4491759	0.6	-	0	transcript_id "Ledus.S2G060800.t1"; gene_id "Ledus.S2G060800"
Ledus.S2	AUGUSTUS	exon	4491395	4491759	.	-	.	transcript_id "Ledus.S2G060800.t1"; gene_id "Ledus.S2G060800"
Ledus.S2	AUGUSTUS	start_codon	4491757	4491759	.	-	0	transcript_id "Ledus.S2G060800.t1"; gene_id "Ledus.S2G060800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4829.t1 is derived from g2267.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20012710	20014494	.	-	.	Ledus.S1G225000
Ledus.S1	AUGUSTUS	transcript	20012710	20014494	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	stop_codon	20012707	20012709	.	-	0	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20012710	20012840	1	-	2	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20012710	20012840	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20012841	20012912	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20012913	20013162	1	-	0	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20012913	20013162	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20013163	20013239	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20013240	20013379	0.81	-	2	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20013240	20013379	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20013380	20013470	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20013471	20013493	0.83	-	1	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20013471	20013493	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20013494	20013572	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20013573	20013669	1	-	2	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20013573	20013669	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20013670	20013821	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20013822	20014007	1	-	2	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20013822	20014007	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20014008	20014095	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20014096	20014143	0.98	-	2	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20014096	20014143	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20014144	20014226	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20014227	20014335	0.98	-	0	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20014227	20014335	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20014336	20014407	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20014408	20014494	0.98	-	0	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20014408	20014494	.	-	.	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	start_codon	20014492	20014494	.	-	0	transcript_id "Ledus.S1G225000.t1"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	transcript	20012710	20014163	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	stop_codon	20012707	20012709	.	-	0	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20012710	20012840	1	-	2	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20012710	20012840	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20012841	20012912	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20012913	20013162	1	-	0	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20012913	20013162	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20013163	20013239	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20013240	20013379	0.78	-	2	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20013240	20013379	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20013380	20013470	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20013471	20013493	0.8	-	1	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20013471	20013493	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20013494	20013572	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20013573	20013669	1	-	2	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20013573	20013669	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20013670	20013821	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20013822	20014003	0.98	-	1	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20013822	20014003	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	intron	20014004	20014095	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	CDS	20014096	20014163	0.55	-	0	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	exon	20014096	20014163	.	-	.	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
Ledus.S1	AUGUSTUS	start_codon	20014161	20014163	.	-	0	transcript_id "Ledus.S1G225000.t2"; gene_id "Ledus.S1G225000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2394.t1 is derived from g9257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17862228	17863847	.	-	.	Ledus.S2G227600
Ledus.S2	AUGUSTUS	transcript	17862228	17863847	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	stop_codon	17862225	17862227	.	-	0	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	CDS	17862228	17862233	1	-	0	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	exon	17862228	17862233	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	intron	17862234	17862308	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	CDS	17862309	17862440	1	-	0	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	exon	17862309	17862440	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	intron	17862441	17862524	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	CDS	17862525	17862593	1	-	0	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	exon	17862525	17862593	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	intron	17862594	17862668	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	CDS	17862669	17862749	1	-	0	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	exon	17862669	17862749	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	intron	17862750	17862820	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	CDS	17862821	17862912	1	-	2	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	exon	17862821	17862912	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	intron	17862913	17862997	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	CDS	17862998	17863097	1	-	0	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	exon	17862998	17863097	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	intron	17863098	17863196	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	CDS	17863197	17863301	1	-	0	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	exon	17863197	17863301	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	intron	17863302	17863396	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	CDS	17863397	17863510	1	-	0	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	exon	17863397	17863510	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	intron	17863511	17863622	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	CDS	17863623	17863847	0.71	-	0	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	exon	17863623	17863847	.	-	.	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
Ledus.S2	AUGUSTUS	start_codon	17863845	17863847	.	-	0	transcript_id "Ledus.S2G227600.t1"; gene_id "Ledus.S2G227600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6806.t1 is derived from g4250.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34377609	34378265	.	-	.	Ledus.S1G422700
Ledus.S1	AUGUSTUS	transcript	34377609	34378265	.	-	.	transcript_id "Ledus.S1G422700.t1"; gene_id "Ledus.S1G422700"
Ledus.S1	AUGUSTUS	stop_codon	34377606	34377608	.	-	0	transcript_id "Ledus.S1G422700.t1"; gene_id "Ledus.S1G422700"
Ledus.S1	AUGUSTUS	CDS	34377609	34378265	0.97	-	0	transcript_id "Ledus.S1G422700.t1"; gene_id "Ledus.S1G422700"
Ledus.S1	AUGUSTUS	exon	34377609	34378265	.	-	.	transcript_id "Ledus.S1G422700.t1"; gene_id "Ledus.S1G422700"
Ledus.S1	AUGUSTUS	start_codon	34378263	34378265	.	-	0	transcript_id "Ledus.S1G422700.t1"; gene_id "Ledus.S1G422700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11140.t1 is derived from g4758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2134511	2136575	.	-	.	Ledus.S4G029600
Ledus.S4	AUGUSTUS	transcript	2134511	2136575	.	-	.	transcript_id "Ledus.S4G029600.t1"; gene_id "Ledus.S4G029600"
Ledus.S4	AUGUSTUS	stop_codon	2134508	2134510	.	-	0	transcript_id "Ledus.S4G029600.t1"; gene_id "Ledus.S4G029600"
Ledus.S4	AUGUSTUS	CDS	2134511	2135641	0.75	-	0	transcript_id "Ledus.S4G029600.t1"; gene_id "Ledus.S4G029600"
Ledus.S4	AUGUSTUS	exon	2134511	2135641	.	-	.	transcript_id "Ledus.S4G029600.t1"; gene_id "Ledus.S4G029600"
Ledus.S4	AUGUSTUS	intron	2135642	2135815	.	-	.	transcript_id "Ledus.S4G029600.t1"; gene_id "Ledus.S4G029600"
Ledus.S4	AUGUSTUS	CDS	2135816	2136283	0.93	-	0	transcript_id "Ledus.S4G029600.t1"; gene_id "Ledus.S4G029600"
Ledus.S4	AUGUSTUS	exon	2135816	2136283	.	-	.	transcript_id "Ledus.S4G029600.t1"; gene_id "Ledus.S4G029600"
Ledus.S4	AUGUSTUS	intron	2136284	2136392	.	-	.	transcript_id "Ledus.S4G029600.t1"; gene_id "Ledus.S4G029600"
Ledus.S4	AUGUSTUS	CDS	2136393	2136575	0.92	-	0	transcript_id "Ledus.S4G029600.t1"; gene_id "Ledus.S4G029600"
Ledus.S4	AUGUSTUS	exon	2136393	2136575	.	-	.	transcript_id "Ledus.S4G029600.t1"; gene_id "Ledus.S4G029600"
Ledus.S4	AUGUSTUS	start_codon	2136573	2136575	.	-	0	transcript_id "Ledus.S4G029600.t1"; gene_id "Ledus.S4G029600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7277.t1 is derived from g11948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	702852	704622	.	+	.	Ledus.S5G005500
Ledus.S5	AUGUSTUS	transcript	702852	704622	.	+	.	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	start_codon	702852	702854	.	+	0	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	CDS	702852	703388	0.97	+	0	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	exon	702852	703388	.	+	.	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	intron	703389	703474	.	+	.	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	CDS	703475	703569	0.99	+	0	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	exon	703475	703569	.	+	.	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	intron	703570	703777	.	+	.	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	CDS	703778	703786	1	+	1	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	exon	703778	703786	.	+	.	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	intron	703787	703871	.	+	.	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	CDS	703872	704622	0.99	+	1	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	exon	703872	704622	.	+	.	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
Ledus.S5	AUGUSTUS	stop_codon	704623	704625	.	+	0	transcript_id "Ledus.S5G005500.t1"; gene_id "Ledus.S5G005500"
# This transcript jg908.t2 is derived from g7769.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg909.t1 is derived from g7770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6083569	6085553	.	-	.	Ledus.S2G079100
Ledus.S2	AUGUSTUS	transcript	6083569	6085553	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	stop_codon	6083566	6083568	.	-	0	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	CDS	6083569	6083688	0.96	-	0	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	exon	6083569	6083688	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	intron	6083689	6083876	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	CDS	6083877	6084028	0.96	-	2	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	exon	6083877	6084028	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	intron	6084029	6084127	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	CDS	6084128	6084171	0.96	-	1	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	exon	6084128	6084171	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	intron	6084172	6084266	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	CDS	6084267	6084283	0.96	-	0	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	exon	6084267	6084283	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	intron	6084284	6084532	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	CDS	6084533	6084690	1	-	2	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	exon	6084533	6084690	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	intron	6084691	6084786	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	CDS	6084787	6084818	1	-	1	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	exon	6084787	6084818	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	intron	6084819	6084945	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	CDS	6084946	6085062	1	-	1	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	exon	6084946	6085062	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	intron	6085063	6085179	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	CDS	6085180	6085242	0.98	-	1	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	exon	6085180	6085242	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	intron	6085243	6085374	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	CDS	6085375	6085553	1	-	0	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	exon	6085375	6085553	.	-	.	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
Ledus.S2	AUGUSTUS	start_codon	6085551	6085553	.	-	0	transcript_id "Ledus.S2G079100.t1"; gene_id "Ledus.S2G079100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2392.t1 is derived from g9255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17858584	17859852	.	-	.	Ledus.S2G227400
Ledus.S2	AUGUSTUS	transcript	17858584	17859852	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	stop_codon	17858581	17858583	.	-	0	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	CDS	17858584	17858714	0.97	-	2	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	exon	17858584	17858714	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	intron	17858715	17858794	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	CDS	17858795	17858865	1	-	1	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	exon	17858795	17858865	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	intron	17858866	17858969	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	CDS	17858970	17859015	1	-	2	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	exon	17858970	17859015	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	intron	17859016	17859085	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	CDS	17859086	17859127	1	-	2	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	exon	17859086	17859127	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	intron	17859128	17859224	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	CDS	17859225	17859380	1	-	2	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	exon	17859225	17859380	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	intron	17859381	17859507	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	CDS	17859508	17859648	1	-	2	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	exon	17859508	17859648	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	intron	17859649	17859728	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	CDS	17859729	17859852	0.58	-	0	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	exon	17859729	17859852	.	-	.	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
Ledus.S2	AUGUSTUS	start_codon	17859850	17859852	.	-	0	transcript_id "Ledus.S2G227400.t1"; gene_id "Ledus.S2G227400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2249.t1 is derived from g9112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16479847	16480406	.	-	.	Ledus.S2G213100
Ledus.S2	AUGUSTUS	transcript	16479847	16480406	.	-	.	transcript_id "Ledus.S2G213100.t1"; gene_id "Ledus.S2G213100"
Ledus.S2	AUGUSTUS	stop_codon	16479844	16479846	.	-	0	transcript_id "Ledus.S2G213100.t1"; gene_id "Ledus.S2G213100"
Ledus.S2	AUGUSTUS	CDS	16479847	16480184	0.7	-	2	transcript_id "Ledus.S2G213100.t1"; gene_id "Ledus.S2G213100"
Ledus.S2	AUGUSTUS	exon	16479847	16480184	.	-	.	transcript_id "Ledus.S2G213100.t1"; gene_id "Ledus.S2G213100"
Ledus.S2	AUGUSTUS	intron	16480185	16480279	.	-	.	transcript_id "Ledus.S2G213100.t1"; gene_id "Ledus.S2G213100"
Ledus.S2	AUGUSTUS	CDS	16480280	16480406	0.79	-	0	transcript_id "Ledus.S2G213100.t1"; gene_id "Ledus.S2G213100"
Ledus.S2	AUGUSTUS	exon	16480280	16480406	.	-	.	transcript_id "Ledus.S2G213100.t1"; gene_id "Ledus.S2G213100"
Ledus.S2	AUGUSTUS	start_codon	16480404	16480406	.	-	0	transcript_id "Ledus.S2G213100.t1"; gene_id "Ledus.S2G213100"
# This transcript jg10680.t2 is derived from g11710.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10681.t1 is derived from g11711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17063077	17064179	.	+	.	Ledus.S3G215800
Ledus.S3	AUGUSTUS	transcript	17063077	17064179	.	+	.	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	start_codon	17063077	17063079	.	+	0	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	CDS	17063077	17063179	0.63	+	0	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	exon	17063077	17063179	.	+	.	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	intron	17063180	17063263	.	+	.	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	CDS	17063264	17063367	1	+	2	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	exon	17063264	17063367	.	+	.	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	intron	17063368	17063465	.	+	.	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	CDS	17063466	17063588	1	+	0	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	exon	17063466	17063588	.	+	.	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	intron	17063589	17063675	.	+	.	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	CDS	17063676	17063941	1	+	0	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	exon	17063676	17063941	.	+	.	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	intron	17063942	17064043	.	+	.	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	CDS	17064044	17064179	0.96	+	1	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	exon	17064044	17064179	.	+	.	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
Ledus.S3	AUGUSTUS	stop_codon	17064180	17064182	.	+	0	transcript_id "Ledus.S3G215800.t1"; gene_id "Ledus.S3G215800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7504.t1 is derived from g12175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3496609	3497079	.	-	.	Ledus.S5G028200
Ledus.S5	AUGUSTUS	transcript	3496609	3497079	.	-	.	transcript_id "Ledus.S5G028200.t1"; gene_id "Ledus.S5G028200"
Ledus.S5	AUGUSTUS	stop_codon	3496606	3496608	.	-	0	transcript_id "Ledus.S5G028200.t1"; gene_id "Ledus.S5G028200"
Ledus.S5	AUGUSTUS	CDS	3496609	3497079	0.83	-	0	transcript_id "Ledus.S5G028200.t1"; gene_id "Ledus.S5G028200"
Ledus.S5	AUGUSTUS	exon	3496609	3497079	.	-	.	transcript_id "Ledus.S5G028200.t1"; gene_id "Ledus.S5G028200"
Ledus.S5	AUGUSTUS	start_codon	3497077	3497079	.	-	0	transcript_id "Ledus.S5G028200.t1"; gene_id "Ledus.S5G028200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10977.t1 is derived from g4595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	980233	981748	.	-	.	Ledus.S4G013300
Ledus.S4	AUGUSTUS	transcript	980233	981748	.	-	.	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	stop_codon	980230	980232	.	-	0	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	CDS	980233	980385	0.72	-	0	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	exon	980233	980385	.	-	.	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	intron	980386	980563	.	-	.	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	CDS	980564	980836	1	-	0	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	exon	980564	980836	.	-	.	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	intron	980837	980954	.	-	.	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	CDS	980955	981074	0.99	-	0	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	exon	980955	981074	.	-	.	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	intron	981075	981214	.	-	.	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	CDS	981215	981433	1	-	0	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	exon	981215	981433	.	-	.	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	intron	981434	981520	.	-	.	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	CDS	981521	981748	0.56	-	0	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	exon	981521	981748	.	-	.	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
Ledus.S4	AUGUSTUS	start_codon	981746	981748	.	-	0	transcript_id "Ledus.S4G013300.t1"; gene_id "Ledus.S4G013300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg819.t1 is derived from g7680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5313826	5316415	.	+	.	Ledus.S2G070100
Ledus.S2	AUGUSTUS	transcript	5313826	5316415	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	start_codon	5313826	5313828	.	+	0	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	CDS	5313826	5314061	0.91	+	0	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	exon	5313826	5314061	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	intron	5314062	5314469	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	CDS	5314470	5314599	0.99	+	1	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	exon	5314470	5314599	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	intron	5314600	5314704	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	CDS	5314705	5314899	0.99	+	0	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	exon	5314705	5314899	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	intron	5314900	5315011	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	CDS	5315012	5315169	1	+	0	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	exon	5315012	5315169	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	intron	5315170	5315367	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	CDS	5315368	5315458	1	+	1	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	exon	5315368	5315458	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	intron	5315459	5315567	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	CDS	5315568	5315633	1	+	0	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	exon	5315568	5315633	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	intron	5315634	5315775	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	CDS	5315776	5315858	1	+	0	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	exon	5315776	5315858	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	intron	5315859	5315953	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	CDS	5315954	5316017	1	+	1	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	exon	5315954	5316017	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	intron	5316018	5316142	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	CDS	5316143	5316211	1	+	0	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	exon	5316143	5316211	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	intron	5316212	5316358	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	CDS	5316359	5316415	1	+	0	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	exon	5316359	5316415	.	+	.	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
Ledus.S2	AUGUSTUS	stop_codon	5316416	5316418	.	+	0	transcript_id "Ledus.S2G070100.t1"; gene_id "Ledus.S2G070100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9413.t1 is derived from g10443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6600454	6601889	.	-	.	Ledus.S3G089000
Ledus.S3	AUGUSTUS	transcript	6600454	6601889	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	stop_codon	6600451	6600453	.	-	0	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	CDS	6600454	6600543	0.93	-	0	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	exon	6600454	6600543	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	intron	6600544	6600636	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	CDS	6600637	6600965	0.99	-	2	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	exon	6600637	6600965	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	intron	6600966	6601048	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	CDS	6601049	6601157	1	-	0	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	exon	6601049	6601157	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	intron	6601158	6601238	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	CDS	6601239	6601315	1	-	2	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	exon	6601239	6601315	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	intron	6601316	6601392	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	CDS	6601393	6601491	1	-	2	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	exon	6601393	6601491	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	intron	6601492	6601590	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	CDS	6601591	6601734	1	-	2	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	exon	6601591	6601734	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	intron	6601735	6601819	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	CDS	6601820	6601889	1	-	0	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	exon	6601820	6601889	.	-	.	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
Ledus.S3	AUGUSTUS	start_codon	6601887	6601889	.	-	0	transcript_id "Ledus.S3G089000.t1"; gene_id "Ledus.S3G089000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2887.t1 is derived from g322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4401231	4401518	.	-	.	Ledus.S1G030800
Ledus.S1	AUGUSTUS	transcript	4401231	4401518	.	-	.	transcript_id "Ledus.S1G030800.t1"; gene_id "Ledus.S1G030800"
Ledus.S1	AUGUSTUS	stop_codon	4401228	4401230	.	-	0	transcript_id "Ledus.S1G030800.t1"; gene_id "Ledus.S1G030800"
Ledus.S1	AUGUSTUS	CDS	4401231	4401518	0.53	-	0	transcript_id "Ledus.S1G030800.t1"; gene_id "Ledus.S1G030800"
Ledus.S1	AUGUSTUS	exon	4401231	4401518	.	-	.	transcript_id "Ledus.S1G030800.t1"; gene_id "Ledus.S1G030800"
Ledus.S1	AUGUSTUS	start_codon	4401516	4401518	.	-	0	transcript_id "Ledus.S1G030800.t1"; gene_id "Ledus.S1G030800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8495.t1 is derived from g13167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12213401	12214316	.	-	.	Ledus.S5G127300
Ledus.S5	AUGUSTUS	transcript	12213401	12214316	.	-	.	transcript_id "Ledus.S5G127300.t1"; gene_id "Ledus.S5G127300"
Ledus.S5	AUGUSTUS	stop_codon	12213398	12213400	.	-	0	transcript_id "Ledus.S5G127300.t1"; gene_id "Ledus.S5G127300"
Ledus.S5	AUGUSTUS	CDS	12213401	12213736	1	-	0	transcript_id "Ledus.S5G127300.t1"; gene_id "Ledus.S5G127300"
Ledus.S5	AUGUSTUS	exon	12213401	12213736	.	-	.	transcript_id "Ledus.S5G127300.t1"; gene_id "Ledus.S5G127300"
Ledus.S5	AUGUSTUS	intron	12213737	12213815	.	-	.	transcript_id "Ledus.S5G127300.t1"; gene_id "Ledus.S5G127300"
Ledus.S5	AUGUSTUS	CDS	12213816	12214031	1	-	0	transcript_id "Ledus.S5G127300.t1"; gene_id "Ledus.S5G127300"
Ledus.S5	AUGUSTUS	exon	12213816	12214031	.	-	.	transcript_id "Ledus.S5G127300.t1"; gene_id "Ledus.S5G127300"
Ledus.S5	AUGUSTUS	intron	12214032	12214109	.	-	.	transcript_id "Ledus.S5G127300.t1"; gene_id "Ledus.S5G127300"
Ledus.S5	AUGUSTUS	CDS	12214110	12214316	0.73	-	0	transcript_id "Ledus.S5G127300.t1"; gene_id "Ledus.S5G127300"
Ledus.S5	AUGUSTUS	exon	12214110	12214316	.	-	.	transcript_id "Ledus.S5G127300.t1"; gene_id "Ledus.S5G127300"
Ledus.S5	AUGUSTUS	start_codon	12214314	12214316	.	-	0	transcript_id "Ledus.S5G127300.t1"; gene_id "Ledus.S5G127300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10794.t1 is derived from g11826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17777035	17779029	.	+	.	Ledus.S3G227100
Ledus.S3	AUGUSTUS	transcript	17777035	17779029	.	+	.	transcript_id "Ledus.S3G227100.t1"; gene_id "Ledus.S3G227100"
Ledus.S3	AUGUSTUS	start_codon	17777035	17777037	.	+	0	transcript_id "Ledus.S3G227100.t1"; gene_id "Ledus.S3G227100"
Ledus.S3	AUGUSTUS	CDS	17777035	17779029	1	+	0	transcript_id "Ledus.S3G227100.t1"; gene_id "Ledus.S3G227100"
Ledus.S3	AUGUSTUS	exon	17777035	17779029	.	+	.	transcript_id "Ledus.S3G227100.t1"; gene_id "Ledus.S3G227100"
Ledus.S3	AUGUSTUS	stop_codon	17779030	17779032	.	+	0	transcript_id "Ledus.S3G227100.t1"; gene_id "Ledus.S3G227100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8952.t1 is derived from g9982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3396839	3397576	.	-	.	Ledus.S3G042900
Ledus.S3	AUGUSTUS	transcript	3396839	3397576	.	-	.	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	stop_codon	3396836	3396838	.	-	0	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	CDS	3396839	3396842	0.93	-	1	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	exon	3396839	3396842	.	-	.	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	intron	3396843	3397089	.	-	.	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	CDS	3397090	3397163	0.93	-	0	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	exon	3397090	3397163	.	-	.	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	intron	3397164	3397251	.	-	.	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	CDS	3397252	3397335	0.95	-	0	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	exon	3397252	3397335	.	-	.	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	intron	3397336	3397414	.	-	.	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	CDS	3397415	3397576	1	-	0	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	exon	3397415	3397576	.	-	.	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
Ledus.S3	AUGUSTUS	start_codon	3397574	3397576	.	-	0	transcript_id "Ledus.S3G042900.t1"; gene_id "Ledus.S3G042900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13081.t1 is derived from g6891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5227990	5228707	.	+	.	Ledus.S6G014300
Ledus.S6	AUGUSTUS	transcript	5227990	5228707	.	+	.	transcript_id "Ledus.S6G014300.t1"; gene_id "Ledus.S6G014300"
Ledus.S6	AUGUSTUS	start_codon	5227990	5227992	.	+	0	transcript_id "Ledus.S6G014300.t1"; gene_id "Ledus.S6G014300"
Ledus.S6	AUGUSTUS	CDS	5227990	5228597	0.25	+	0	transcript_id "Ledus.S6G014300.t1"; gene_id "Ledus.S6G014300"
Ledus.S6	AUGUSTUS	exon	5227990	5228597	.	+	.	transcript_id "Ledus.S6G014300.t1"; gene_id "Ledus.S6G014300"
Ledus.S6	AUGUSTUS	intron	5228598	5228691	.	+	.	transcript_id "Ledus.S6G014300.t1"; gene_id "Ledus.S6G014300"
Ledus.S6	AUGUSTUS	CDS	5228692	5228707	0.36	+	1	transcript_id "Ledus.S6G014300.t1"; gene_id "Ledus.S6G014300"
Ledus.S6	AUGUSTUS	exon	5228692	5228707	.	+	.	transcript_id "Ledus.S6G014300.t1"; gene_id "Ledus.S6G014300"
Ledus.S6	AUGUSTUS	stop_codon	5228708	5228710	.	+	0	transcript_id "Ledus.S6G014300.t1"; gene_id "Ledus.S6G014300"
# This transcript jg7004.t2 is derived from g6535.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7005.t1 is derived from g6536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	755213	759083	.	-	.	Ledus.C7G006600
Ledus.C7	AUGUSTUS	transcript	755213	759083	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	stop_codon	755210	755212	.	-	0	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	CDS	755213	755256	0.51	-	2	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	exon	755213	755256	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	intron	755257	755828	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	CDS	755829	755986	0.33	-	1	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	exon	755829	755986	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	intron	755987	756096	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	CDS	756097	756443	0.56	-	0	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	exon	756097	756443	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	intron	756444	756568	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	CDS	756569	756682	1	-	0	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	exon	756569	756682	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	intron	756683	756767	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	CDS	756768	756935	1	-	0	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	exon	756768	756935	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	intron	756936	757289	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	CDS	757290	757532	1	-	0	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	exon	757290	757532	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	intron	757533	757857	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	CDS	757858	757941	1	-	0	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	exon	757858	757941	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	intron	757942	758231	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	CDS	758232	759083	0.98	-	0	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	exon	758232	759083	.	-	.	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
Ledus.C7	AUGUSTUS	start_codon	759081	759083	.	-	0	transcript_id "Ledus.C7G006600.t1"; gene_id "Ledus.C7G006600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9811.t1 is derived from g10841.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10051511	10051798	.	-	.	Ledus.S3G128800
Ledus.S3	AUGUSTUS	transcript	10051511	10051798	.	-	.	transcript_id "Ledus.S3G128800.t1"; gene_id "Ledus.S3G128800"
Ledus.S3	AUGUSTUS	stop_codon	10051508	10051510	.	-	0	transcript_id "Ledus.S3G128800.t1"; gene_id "Ledus.S3G128800"
Ledus.S3	AUGUSTUS	CDS	10051511	10051798	0.86	-	0	transcript_id "Ledus.S3G128800.t1"; gene_id "Ledus.S3G128800"
Ledus.S3	AUGUSTUS	exon	10051511	10051798	.	-	.	transcript_id "Ledus.S3G128800.t1"; gene_id "Ledus.S3G128800"
Ledus.S3	AUGUSTUS	start_codon	10051796	10051798	.	-	0	transcript_id "Ledus.S3G128800.t1"; gene_id "Ledus.S3G128800"
# This transcript jg327.t2 is derived from g7188.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg327.t3 is derived from g7188.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg328.t1 is derived from g7189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1684106	1687567	.	-	.	Ledus.S2G021000
Ledus.S2	AUGUSTUS	transcript	1684106	1687567	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	stop_codon	1684103	1684105	.	-	0	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1684106	1684162	0.99	-	0	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1684106	1684162	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1684163	1684240	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1684241	1684279	0.99	-	0	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1684241	1684279	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1684280	1684362	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1684363	1684431	1	-	0	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1684363	1684431	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1684432	1684507	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1684508	1684529	1	-	1	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1684508	1684529	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1684530	1684612	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1684613	1684659	1	-	0	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1684613	1684659	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1684660	1684820	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1684821	1684917	0.88	-	1	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1684821	1684917	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1684918	1685184	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1685185	1685399	0.51	-	0	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1685185	1685399	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1685400	1685498	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1685499	1685541	1	-	1	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1685499	1685541	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1685542	1685637	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1685638	1685900	1	-	0	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1685638	1685900	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1685901	1685981	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1685982	1686187	0.64	-	2	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1685982	1686187	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1686188	1686311	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1686312	1686495	0.98	-	0	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1686312	1686495	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1686496	1686765	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1686766	1686963	1	-	0	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1686766	1686963	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1686964	1687073	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1687074	1687239	0.96	-	1	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1687074	1687239	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	intron	1687240	1687322	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	CDS	1687323	1687567	0.22	-	0	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	exon	1687323	1687567	.	-	.	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
Ledus.S2	AUGUSTUS	start_codon	1687565	1687567	.	-	0	transcript_id "Ledus.S2G021000.t1"; gene_id "Ledus.S2G021000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg580.t1 is derived from g7441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3439128	3443035	.	+	.	Ledus.S2G046200
Ledus.S2	AUGUSTUS	transcript	3439128	3443035	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	start_codon	3439128	3439130	.	+	0	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3439128	3439197	0.47	+	0	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3439128	3439197	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3439198	3439367	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3439368	3439401	0.46	+	2	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3439368	3439401	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3439402	3439564	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3439565	3439645	0.22	+	1	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3439565	3439645	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3439646	3439827	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3439828	3440022	0.92	+	1	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3439828	3440022	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3440023	3440197	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3440198	3440951	0.99	+	1	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3440198	3440951	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3440952	3441084	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3441085	3441171	0.99	+	0	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3441085	3441171	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3441172	3441285	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3441286	3441369	1	+	0	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3441286	3441369	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3441370	3441454	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3441455	3441541	1	+	0	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3441455	3441541	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3441542	3441647	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3441648	3441746	1	+	0	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3441648	3441746	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3441747	3442061	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3442062	3442115	1	+	0	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3442062	3442115	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3442116	3442238	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3442239	3442330	0.76	+	0	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3442239	3442330	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3442331	3442438	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3442439	3442553	0.54	+	1	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3442439	3442553	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3442554	3442634	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3442635	3442785	1	+	0	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3442635	3442785	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	intron	3442786	3442892	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	CDS	3442893	3443035	0.51	+	2	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	exon	3442893	3443035	.	+	.	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
Ledus.S2	AUGUSTUS	stop_codon	3443036	3443038	.	+	0	transcript_id "Ledus.S2G046200.t1"; gene_id "Ledus.S2G046200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4258.t1 is derived from g1694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15799186	15799948	.	-	.	Ledus.S1G167900
Ledus.S1	AUGUSTUS	transcript	15799186	15799948	.	-	.	transcript_id "Ledus.S1G167900.t1"; gene_id "Ledus.S1G167900"
Ledus.S1	AUGUSTUS	stop_codon	15799183	15799185	.	-	0	transcript_id "Ledus.S1G167900.t1"; gene_id "Ledus.S1G167900"
Ledus.S1	AUGUSTUS	CDS	15799186	15799293	0.96	-	0	transcript_id "Ledus.S1G167900.t1"; gene_id "Ledus.S1G167900"
Ledus.S1	AUGUSTUS	exon	15799186	15799293	.	-	.	transcript_id "Ledus.S1G167900.t1"; gene_id "Ledus.S1G167900"
Ledus.S1	AUGUSTUS	intron	15799294	15799406	.	-	.	transcript_id "Ledus.S1G167900.t1"; gene_id "Ledus.S1G167900"
Ledus.S1	AUGUSTUS	CDS	15799407	15799572	0.89	-	1	transcript_id "Ledus.S1G167900.t1"; gene_id "Ledus.S1G167900"
Ledus.S1	AUGUSTUS	exon	15799407	15799572	.	-	.	transcript_id "Ledus.S1G167900.t1"; gene_id "Ledus.S1G167900"
Ledus.S1	AUGUSTUS	intron	15799573	15799697	.	-	.	transcript_id "Ledus.S1G167900.t1"; gene_id "Ledus.S1G167900"
Ledus.S1	AUGUSTUS	CDS	15799698	15799948	0.96	-	0	transcript_id "Ledus.S1G167900.t1"; gene_id "Ledus.S1G167900"
Ledus.S1	AUGUSTUS	exon	15799698	15799948	.	-	.	transcript_id "Ledus.S1G167900.t1"; gene_id "Ledus.S1G167900"
Ledus.S1	AUGUSTUS	start_codon	15799946	15799948	.	-	0	transcript_id "Ledus.S1G167900.t1"; gene_id "Ledus.S1G167900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6517.t1 is derived from g3960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31834474	31836516	.	-	.	Ledus.S1G393800
Ledus.S1	AUGUSTUS	transcript	31834474	31836516	.	-	.	transcript_id "Ledus.S1G393800.t1"; gene_id "Ledus.S1G393800"
Ledus.S1	AUGUSTUS	stop_codon	31834471	31834473	.	-	0	transcript_id "Ledus.S1G393800.t1"; gene_id "Ledus.S1G393800"
Ledus.S1	AUGUSTUS	CDS	31834474	31836516	1	-	0	transcript_id "Ledus.S1G393800.t1"; gene_id "Ledus.S1G393800"
Ledus.S1	AUGUSTUS	exon	31834474	31836516	.	-	.	transcript_id "Ledus.S1G393800.t1"; gene_id "Ledus.S1G393800"
Ledus.S1	AUGUSTUS	start_codon	31836514	31836516	.	-	0	transcript_id "Ledus.S1G393800.t1"; gene_id "Ledus.S1G393800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5902.t1 is derived from g3345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27692989	27693379	.	-	.	Ledus.S1G332300
Ledus.S1	AUGUSTUS	transcript	27692989	27693379	.	-	.	transcript_id "Ledus.S1G332300.t1"; gene_id "Ledus.S1G332300"
Ledus.S1	AUGUSTUS	stop_codon	27692986	27692988	.	-	0	transcript_id "Ledus.S1G332300.t1"; gene_id "Ledus.S1G332300"
Ledus.S1	AUGUSTUS	CDS	27692989	27693075	0.68	-	0	transcript_id "Ledus.S1G332300.t1"; gene_id "Ledus.S1G332300"
Ledus.S1	AUGUSTUS	exon	27692989	27693075	.	-	.	transcript_id "Ledus.S1G332300.t1"; gene_id "Ledus.S1G332300"
Ledus.S1	AUGUSTUS	intron	27693076	27693178	.	-	.	transcript_id "Ledus.S1G332300.t1"; gene_id "Ledus.S1G332300"
Ledus.S1	AUGUSTUS	CDS	27693179	27693379	0.16	-	0	transcript_id "Ledus.S1G332300.t1"; gene_id "Ledus.S1G332300"
Ledus.S1	AUGUSTUS	exon	27693179	27693379	.	-	.	transcript_id "Ledus.S1G332300.t1"; gene_id "Ledus.S1G332300"
Ledus.S1	AUGUSTUS	start_codon	27693377	27693379	.	-	0	transcript_id "Ledus.S1G332300.t1"; gene_id "Ledus.S1G332300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11591.t1 is derived from g5209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5429107	5429874	.	-	.	Ledus.S4G074700
Ledus.S4	AUGUSTUS	transcript	5429107	5429874	.	-	.	transcript_id "Ledus.S4G074700.t1"; gene_id "Ledus.S4G074700"
Ledus.S4	AUGUSTUS	stop_codon	5429104	5429106	.	-	0	transcript_id "Ledus.S4G074700.t1"; gene_id "Ledus.S4G074700"
Ledus.S4	AUGUSTUS	CDS	5429107	5429874	1	-	0	transcript_id "Ledus.S4G074700.t1"; gene_id "Ledus.S4G074700"
Ledus.S4	AUGUSTUS	exon	5429107	5429874	.	-	.	transcript_id "Ledus.S4G074700.t1"; gene_id "Ledus.S4G074700"
Ledus.S4	AUGUSTUS	start_codon	5429872	5429874	.	-	0	transcript_id "Ledus.S4G074700.t1"; gene_id "Ledus.S4G074700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2993.t1 is derived from g428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5192486	5193442	.	-	.	Ledus.S1G041400
Ledus.S1	AUGUSTUS	transcript	5192486	5193442	.	-	.	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	stop_codon	5192483	5192485	.	-	0	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	CDS	5192486	5192540	0.39	-	1	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	exon	5192486	5192540	.	-	.	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	intron	5192541	5192630	.	-	.	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	CDS	5192631	5192685	0.25	-	2	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	exon	5192631	5192685	.	-	.	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	intron	5192686	5192886	.	-	.	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	CDS	5192887	5193025	0.78	-	0	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	exon	5192887	5193025	.	-	.	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	intron	5193026	5193109	.	-	.	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	CDS	5193110	5193146	0.56	-	1	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	exon	5193110	5193146	.	-	.	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	intron	5193147	5193282	.	-	.	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	CDS	5193283	5193288	0.99	-	1	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	exon	5193283	5193288	.	-	.	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	intron	5193289	5193386	.	-	.	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	CDS	5193387	5193442	0.99	-	0	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	exon	5193387	5193442	.	-	.	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
Ledus.S1	AUGUSTUS	start_codon	5193440	5193442	.	-	0	transcript_id "Ledus.S1G041400.t1"; gene_id "Ledus.S1G041400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg262.t1 is derived from g7123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1281142	1283126	.	-	.	Ledus.S2G014400
Ledus.S2	AUGUSTUS	transcript	1281142	1283126	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	stop_codon	1281139	1281141	.	-	0	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	CDS	1281142	1281232	1	-	1	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	exon	1281142	1281232	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	intron	1281233	1281346	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	CDS	1281347	1281474	1	-	0	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	exon	1281347	1281474	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	intron	1281475	1281581	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	CDS	1281582	1281647	0.96	-	0	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	exon	1281582	1281647	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	intron	1281648	1281761	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	CDS	1281762	1281813	0.97	-	1	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	exon	1281762	1281813	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	intron	1281814	1281921	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	CDS	1281922	1282007	1	-	0	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	exon	1281922	1282007	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	intron	1282008	1282112	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	CDS	1282113	1282303	0.94	-	2	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	exon	1282113	1282303	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	intron	1282304	1282428	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	CDS	1282429	1282545	1	-	2	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	exon	1282429	1282545	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	intron	1282546	1282686	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	CDS	1282687	1282757	1	-	1	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	exon	1282687	1282757	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	intron	1282758	1282965	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	CDS	1282966	1283126	1	-	0	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	exon	1282966	1283126	.	-	.	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
Ledus.S2	AUGUSTUS	start_codon	1283124	1283126	.	-	0	transcript_id "Ledus.S2G014400.t1"; gene_id "Ledus.S2G014400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3880.t1 is derived from g1316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13365429	13366699	.	+	.	Ledus.S1G130100
Ledus.S1	AUGUSTUS	transcript	13365429	13366699	.	+	.	transcript_id "Ledus.S1G130100.t1"; gene_id "Ledus.S1G130100"
Ledus.S1	AUGUSTUS	start_codon	13365429	13365431	.	+	0	transcript_id "Ledus.S1G130100.t1"; gene_id "Ledus.S1G130100"
Ledus.S1	AUGUSTUS	CDS	13365429	13365932	0.26	+	0	transcript_id "Ledus.S1G130100.t1"; gene_id "Ledus.S1G130100"
Ledus.S1	AUGUSTUS	exon	13365429	13365932	.	+	.	transcript_id "Ledus.S1G130100.t1"; gene_id "Ledus.S1G130100"
Ledus.S1	AUGUSTUS	intron	13365933	13366067	.	+	.	transcript_id "Ledus.S1G130100.t1"; gene_id "Ledus.S1G130100"
Ledus.S1	AUGUSTUS	CDS	13366068	13366224	0.58	+	0	transcript_id "Ledus.S1G130100.t1"; gene_id "Ledus.S1G130100"
Ledus.S1	AUGUSTUS	exon	13366068	13366224	.	+	.	transcript_id "Ledus.S1G130100.t1"; gene_id "Ledus.S1G130100"
Ledus.S1	AUGUSTUS	intron	13366225	13366466	.	+	.	transcript_id "Ledus.S1G130100.t1"; gene_id "Ledus.S1G130100"
Ledus.S1	AUGUSTUS	CDS	13366467	13366699	0.45	+	2	transcript_id "Ledus.S1G130100.t1"; gene_id "Ledus.S1G130100"
Ledus.S1	AUGUSTUS	exon	13366467	13366699	.	+	.	transcript_id "Ledus.S1G130100.t1"; gene_id "Ledus.S1G130100"
Ledus.S1	AUGUSTUS	stop_codon	13366700	13366702	.	+	0	transcript_id "Ledus.S1G130100.t1"; gene_id "Ledus.S1G130100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1084.t1 is derived from g7945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7359211	7359420	.	+	.	Ledus.S2G096600
Ledus.S2	AUGUSTUS	transcript	7359211	7359420	.	+	.	transcript_id "Ledus.S2G096600.t1"; gene_id "Ledus.S2G096600"
Ledus.S2	AUGUSTUS	start_codon	7359211	7359213	.	+	0	transcript_id "Ledus.S2G096600.t1"; gene_id "Ledus.S2G096600"
Ledus.S2	AUGUSTUS	CDS	7359211	7359420	1	+	0	transcript_id "Ledus.S2G096600.t1"; gene_id "Ledus.S2G096600"
Ledus.S2	AUGUSTUS	exon	7359211	7359420	.	+	.	transcript_id "Ledus.S2G096600.t1"; gene_id "Ledus.S2G096600"
Ledus.S2	AUGUSTUS	stop_codon	7359421	7359423	.	+	0	transcript_id "Ledus.S2G096600.t1"; gene_id "Ledus.S2G096600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5912.t1 is derived from g3355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27748850	27750191	.	-	.	Ledus.S1G333300
Ledus.S1	AUGUSTUS	transcript	27748850	27750191	.	-	.	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	stop_codon	27748847	27748849	.	-	0	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	CDS	27748850	27748942	1	-	0	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	exon	27748850	27748942	.	-	.	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	intron	27748943	27749103	.	-	.	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	CDS	27749104	27749116	1	-	1	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	exon	27749104	27749116	.	-	.	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	intron	27749117	27749183	.	-	.	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	CDS	27749184	27749479	0.52	-	0	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	exon	27749184	27749479	.	-	.	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	intron	27749480	27749580	.	-	.	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	CDS	27749581	27749813	1	-	2	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	exon	27749581	27749813	.	-	.	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	intron	27749814	27750130	.	-	.	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	CDS	27750131	27750191	1	-	0	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	exon	27750131	27750191	.	-	.	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
Ledus.S1	AUGUSTUS	start_codon	27750189	27750191	.	-	0	transcript_id "Ledus.S1G333300.t1"; gene_id "Ledus.S1G333300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2808.t1 is derived from g242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3870643	3874486	.	+	.	Ledus.S1G022900
Ledus.S1	AUGUSTUS	transcript	3870643	3874486	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	start_codon	3870643	3870645	.	+	0	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	CDS	3870643	3870967	0.79	+	0	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	exon	3870643	3870967	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	intron	3870968	3872119	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	CDS	3872120	3872333	1	+	2	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	exon	3872120	3872333	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	intron	3872334	3872431	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	CDS	3872432	3872537	1	+	1	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	exon	3872432	3872537	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	intron	3872538	3872667	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	CDS	3872668	3872933	1	+	0	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	exon	3872668	3872933	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	intron	3872934	3873133	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	CDS	3873134	3873413	1	+	1	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	exon	3873134	3873413	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	intron	3873414	3873603	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	CDS	3873604	3873711	1	+	0	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	exon	3873604	3873711	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	intron	3873712	3873862	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	CDS	3873863	3873952	1	+	0	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	exon	3873863	3873952	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	intron	3873953	3874101	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	CDS	3874102	3874206	1	+	0	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	exon	3874102	3874206	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	intron	3874207	3874321	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	CDS	3874322	3874486	0.9	+	0	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	exon	3874322	3874486	.	+	.	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
Ledus.S1	AUGUSTUS	stop_codon	3874487	3874489	.	+	0	transcript_id "Ledus.S1G022900.t1"; gene_id "Ledus.S1G022900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1522.t1 is derived from g8383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10754676	10755331	.	+	.	Ledus.S2G140400
Ledus.S2	AUGUSTUS	transcript	10754676	10755331	.	+	.	transcript_id "Ledus.S2G140400.t1"; gene_id "Ledus.S2G140400"
Ledus.S2	AUGUSTUS	start_codon	10754676	10754678	.	+	0	transcript_id "Ledus.S2G140400.t1"; gene_id "Ledus.S2G140400"
Ledus.S2	AUGUSTUS	CDS	10754676	10754881	0.32	+	0	transcript_id "Ledus.S2G140400.t1"; gene_id "Ledus.S2G140400"
Ledus.S2	AUGUSTUS	exon	10754676	10754881	.	+	.	transcript_id "Ledus.S2G140400.t1"; gene_id "Ledus.S2G140400"
Ledus.S2	AUGUSTUS	intron	10754882	10755125	.	+	.	transcript_id "Ledus.S2G140400.t1"; gene_id "Ledus.S2G140400"
Ledus.S2	AUGUSTUS	CDS	10755126	10755160	0.98	+	1	transcript_id "Ledus.S2G140400.t1"; gene_id "Ledus.S2G140400"
Ledus.S2	AUGUSTUS	exon	10755126	10755160	.	+	.	transcript_id "Ledus.S2G140400.t1"; gene_id "Ledus.S2G140400"
Ledus.S2	AUGUSTUS	intron	10755161	10755299	.	+	.	transcript_id "Ledus.S2G140400.t1"; gene_id "Ledus.S2G140400"
Ledus.S2	AUGUSTUS	CDS	10755300	10755331	0.99	+	2	transcript_id "Ledus.S2G140400.t1"; gene_id "Ledus.S2G140400"
Ledus.S2	AUGUSTUS	exon	10755300	10755331	.	+	.	transcript_id "Ledus.S2G140400.t1"; gene_id "Ledus.S2G140400"
Ledus.S2	AUGUSTUS	stop_codon	10755332	10755334	.	+	0	transcript_id "Ledus.S2G140400.t1"; gene_id "Ledus.S2G140400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7503.t1 is derived from g12174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3493061	3493552	.	-	.	Ledus.S5G028100
Ledus.S5	AUGUSTUS	transcript	3493061	3493552	.	-	.	transcript_id "Ledus.S5G028100.t1"; gene_id "Ledus.S5G028100"
Ledus.S5	AUGUSTUS	stop_codon	3493058	3493060	.	-	0	transcript_id "Ledus.S5G028100.t1"; gene_id "Ledus.S5G028100"
Ledus.S5	AUGUSTUS	CDS	3493061	3493552	0.94	-	0	transcript_id "Ledus.S5G028100.t1"; gene_id "Ledus.S5G028100"
Ledus.S5	AUGUSTUS	exon	3493061	3493552	.	-	.	transcript_id "Ledus.S5G028100.t1"; gene_id "Ledus.S5G028100"
Ledus.S5	AUGUSTUS	start_codon	3493550	3493552	.	-	0	transcript_id "Ledus.S5G028100.t1"; gene_id "Ledus.S5G028100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6133.t1 is derived from g3576.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29147846	29150718	.	-	.	Ledus.S1G355400
Ledus.S1	AUGUSTUS	transcript	29147846	29150718	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	stop_codon	29147843	29147845	.	-	0	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29147846	29147950	0.85	-	0	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29147846	29147950	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	intron	29147951	29148053	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29148054	29148251	0.96	-	0	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29148054	29148251	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	intron	29148252	29148343	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29148344	29148430	1	-	0	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29148344	29148430	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	intron	29148431	29148519	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29148520	29148605	1	-	2	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29148520	29148605	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	intron	29148606	29148697	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29148698	29148799	1	-	2	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29148698	29148799	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	intron	29148800	29148887	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29148888	29148991	1	-	1	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29148888	29148991	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	intron	29148992	29149098	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29149099	29149175	1	-	0	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29149099	29149175	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	intron	29149176	29149290	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29149291	29149371	0.91	-	0	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29149291	29149371	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	intron	29149372	29149458	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29149459	29149575	0.83	-	0	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29149459	29149575	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	intron	29149576	29149723	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29149724	29149795	1	-	0	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29149724	29149795	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	intron	29149796	29149969	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29149970	29150144	1	-	1	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29149970	29150144	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	intron	29150145	29150271	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29150272	29150426	1	-	0	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29150272	29150426	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	intron	29150427	29150613	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	CDS	29150614	29150718	0.99	-	0	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	exon	29150614	29150718	.	-	.	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
Ledus.S1	AUGUSTUS	start_codon	29150716	29150718	.	-	0	transcript_id "Ledus.S1G355400.t1"; gene_id "Ledus.S1G355400"
# This transcript jg11691.t2 is derived from g5310.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11692.t1 is derived from g5311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6040699	6041193	.	-	.	Ledus.S4G084800
Ledus.S4	AUGUSTUS	transcript	6040699	6041193	.	-	.	transcript_id "Ledus.S4G084800.t1"; gene_id "Ledus.S4G084800"
Ledus.S4	AUGUSTUS	stop_codon	6040696	6040698	.	-	0	transcript_id "Ledus.S4G084800.t1"; gene_id "Ledus.S4G084800"
Ledus.S4	AUGUSTUS	CDS	6040699	6041193	0.24	-	0	transcript_id "Ledus.S4G084800.t1"; gene_id "Ledus.S4G084800"
Ledus.S4	AUGUSTUS	exon	6040699	6041193	.	-	.	transcript_id "Ledus.S4G084800.t1"; gene_id "Ledus.S4G084800"
Ledus.S4	AUGUSTUS	start_codon	6041191	6041193	.	-	0	transcript_id "Ledus.S4G084800.t1"; gene_id "Ledus.S4G084800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7767.t1 is derived from g12438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6387441	6387638	.	-	.	Ledus.S5G054500
Ledus.S5	AUGUSTUS	transcript	6387441	6387638	.	-	.	transcript_id "Ledus.S5G054500.t1"; gene_id "Ledus.S5G054500"
Ledus.S5	AUGUSTUS	stop_codon	6387438	6387440	.	-	0	transcript_id "Ledus.S5G054500.t1"; gene_id "Ledus.S5G054500"
Ledus.S5	AUGUSTUS	CDS	6387441	6387638	0.93	-	0	transcript_id "Ledus.S5G054500.t1"; gene_id "Ledus.S5G054500"
Ledus.S5	AUGUSTUS	exon	6387441	6387638	.	-	.	transcript_id "Ledus.S5G054500.t1"; gene_id "Ledus.S5G054500"
Ledus.S5	AUGUSTUS	start_codon	6387636	6387638	.	-	0	transcript_id "Ledus.S5G054500.t1"; gene_id "Ledus.S5G054500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8107.t1 is derived from g12778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9154869	9160159	.	-	.	Ledus.S5G088500
Ledus.S5	AUGUSTUS	transcript	9154869	9160159	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	stop_codon	9154866	9154868	.	-	0	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9154869	9155087	0.68	-	0	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9154869	9155087	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9155088	9155189	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9155190	9155336	0.69	-	0	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9155190	9155336	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9155337	9155440	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9155441	9155582	0.98	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9155441	9155582	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9155583	9155685	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9155686	9155831	1	-	0	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9155686	9155831	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9155832	9155913	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9155914	9156008	0.98	-	2	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9155914	9156008	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9156009	9156110	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9156111	9156162	0.97	-	0	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9156111	9156162	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9156163	9156269	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9156270	9156559	0.97	-	2	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9156270	9156559	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9156560	9156661	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9156662	9156838	0.95	-	2	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9156662	9156838	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9156839	9156956	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9156957	9157022	1	-	2	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9156957	9157022	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9157023	9157113	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9157114	9157126	1	-	0	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9157114	9157126	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9157127	9157182	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9157183	9157213	1	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9157183	9157213	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9157214	9157308	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9157309	9157383	1	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9157309	9157383	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9157384	9157493	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9157494	9157562	0.99	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9157494	9157562	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9157563	9157693	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9157694	9157765	1	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9157694	9157765	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9157766	9157984	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9157985	9158056	1	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9157985	9158056	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9158057	9158163	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9158164	9158235	1	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9158164	9158235	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9158236	9158353	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9158354	9158425	1	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9158354	9158425	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9158426	9158628	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9158629	9158700	1	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9158629	9158700	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9158701	9158860	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9158861	9158932	1	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9158861	9158932	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9158933	9159061	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9159062	9159133	1	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9159062	9159133	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9159134	9159351	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9159352	9159513	1	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9159352	9159513	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9159514	9159694	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9159695	9159818	1	-	2	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9159695	9159818	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9159819	9159972	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9159973	9160046	1	-	1	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9159973	9160046	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	intron	9160047	9160133	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	CDS	9160134	9160159	0.6	-	0	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	exon	9160134	9160159	.	-	.	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
Ledus.S5	AUGUSTUS	start_codon	9160157	9160159	.	-	0	transcript_id "Ledus.S5G088500.t1"; gene_id "Ledus.S5G088500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8668.t1 is derived from g9698.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1289215	1292276	.	-	.	Ledus.S3G014500
Ledus.S3	AUGUSTUS	transcript	1289215	1292276	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	stop_codon	1289212	1289214	.	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1289215	1289349	1	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1289215	1289349	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1289350	1289436	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1289437	1289622	1	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1289437	1289622	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1289623	1289714	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1289715	1289827	0.7	-	2	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1289715	1289827	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1289828	1289929	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1289930	1289966	0.7	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1289930	1289966	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1289967	1290047	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1290048	1290119	1	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1290048	1290119	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1290120	1290221	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1290222	1290335	1	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1290222	1290335	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1290336	1290408	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1290409	1290480	1	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1290409	1290480	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1290481	1290756	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1290757	1290795	1	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1290757	1290795	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1290796	1290881	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1290882	1290956	1	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1290882	1290956	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1290957	1291080	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1291081	1291194	0.99	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1291081	1291194	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1291195	1291315	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1291316	1291380	1	-	2	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1291316	1291380	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1291381	1291578	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1291579	1291693	1	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1291579	1291693	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1291694	1291855	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1291856	1292010	1	-	2	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1291856	1292010	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1292011	1292143	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1292144	1292276	0.83	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1292144	1292276	.	-	.	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	start_codon	1292274	1292276	.	-	0	transcript_id "Ledus.S3G014500.t1"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	transcript	1289215	1292276	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	stop_codon	1289212	1289214	.	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1289215	1289349	1	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1289215	1289349	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1289350	1289436	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1289437	1289622	1	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1289437	1289622	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1289623	1289714	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1289715	1289827	0.66	-	2	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1289715	1289827	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1289828	1289929	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1289930	1289966	0.66	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1289930	1289966	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1289967	1290047	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1290048	1290119	1	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1290048	1290119	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1290120	1290221	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1290222	1290335	1	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1290222	1290335	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1290336	1290408	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1290409	1290480	1	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1290409	1290480	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1290481	1290756	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1290757	1290795	1	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1290757	1290795	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1290796	1290881	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1290882	1290956	1	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1290882	1290956	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1290957	1291080	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1291081	1291194	0.98	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1291081	1291194	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1291195	1291315	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1291316	1291380	1	-	2	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1291316	1291380	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1291381	1291578	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1291579	1291693	1	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1291579	1291693	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1291694	1291855	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1291856	1292007	1	-	2	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1291856	1292007	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	intron	1292008	1292143	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	CDS	1292144	1292276	0.86	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	exon	1292144	1292276	.	-	.	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
Ledus.S3	AUGUSTUS	start_codon	1292274	1292276	.	-	0	transcript_id "Ledus.S3G014500.t2"; gene_id "Ledus.S3G014500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6854.t1 is derived from g4298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34685003	34685296	.	-	.	Ledus.S1G427500
Ledus.S1	AUGUSTUS	transcript	34685003	34685296	.	-	.	transcript_id "Ledus.S1G427500.t1"; gene_id "Ledus.S1G427500"
Ledus.S1	AUGUSTUS	stop_codon	34685000	34685002	.	-	0	transcript_id "Ledus.S1G427500.t1"; gene_id "Ledus.S1G427500"
Ledus.S1	AUGUSTUS	CDS	34685003	34685296	0.66	-	0	transcript_id "Ledus.S1G427500.t1"; gene_id "Ledus.S1G427500"
Ledus.S1	AUGUSTUS	exon	34685003	34685296	.	-	.	transcript_id "Ledus.S1G427500.t1"; gene_id "Ledus.S1G427500"
Ledus.S1	AUGUSTUS	start_codon	34685294	34685296	.	-	0	transcript_id "Ledus.S1G427500.t1"; gene_id "Ledus.S1G427500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5998.t1 is derived from g3441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28206534	28207600	.	-	.	Ledus.S1G341900
Ledus.S1	AUGUSTUS	transcript	28206534	28207600	.	-	.	transcript_id "Ledus.S1G341900.t1"; gene_id "Ledus.S1G341900"
Ledus.S1	AUGUSTUS	stop_codon	28206531	28206533	.	-	0	transcript_id "Ledus.S1G341900.t1"; gene_id "Ledus.S1G341900"
Ledus.S1	AUGUSTUS	CDS	28206534	28207067	1	-	0	transcript_id "Ledus.S1G341900.t1"; gene_id "Ledus.S1G341900"
Ledus.S1	AUGUSTUS	exon	28206534	28207067	.	-	.	transcript_id "Ledus.S1G341900.t1"; gene_id "Ledus.S1G341900"
Ledus.S1	AUGUSTUS	intron	28207068	28207150	.	-	.	transcript_id "Ledus.S1G341900.t1"; gene_id "Ledus.S1G341900"
Ledus.S1	AUGUSTUS	CDS	28207151	28207441	1	-	0	transcript_id "Ledus.S1G341900.t1"; gene_id "Ledus.S1G341900"
Ledus.S1	AUGUSTUS	exon	28207151	28207441	.	-	.	transcript_id "Ledus.S1G341900.t1"; gene_id "Ledus.S1G341900"
Ledus.S1	AUGUSTUS	intron	28207442	28207510	.	-	.	transcript_id "Ledus.S1G341900.t1"; gene_id "Ledus.S1G341900"
Ledus.S1	AUGUSTUS	CDS	28207511	28207600	0.99	-	0	transcript_id "Ledus.S1G341900.t1"; gene_id "Ledus.S1G341900"
Ledus.S1	AUGUSTUS	exon	28207511	28207600	.	-	.	transcript_id "Ledus.S1G341900.t1"; gene_id "Ledus.S1G341900"
Ledus.S1	AUGUSTUS	start_codon	28207598	28207600	.	-	0	transcript_id "Ledus.S1G341900.t1"; gene_id "Ledus.S1G341900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10347.t1 is derived from g11377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14352593	14352880	.	+	.	Ledus.S3G182400
Ledus.S3	AUGUSTUS	transcript	14352593	14352880	.	+	.	transcript_id "Ledus.S3G182400.t1"; gene_id "Ledus.S3G182400"
Ledus.S3	AUGUSTUS	start_codon	14352593	14352595	.	+	0	transcript_id "Ledus.S3G182400.t1"; gene_id "Ledus.S3G182400"
Ledus.S3	AUGUSTUS	CDS	14352593	14352880	0.85	+	0	transcript_id "Ledus.S3G182400.t1"; gene_id "Ledus.S3G182400"
Ledus.S3	AUGUSTUS	exon	14352593	14352880	.	+	.	transcript_id "Ledus.S3G182400.t1"; gene_id "Ledus.S3G182400"
Ledus.S3	AUGUSTUS	stop_codon	14352881	14352883	.	+	0	transcript_id "Ledus.S3G182400.t1"; gene_id "Ledus.S3G182400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11562.t1 is derived from g5180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5286130	5290878	.	-	.	Ledus.S4G071800
Ledus.S4	AUGUSTUS	transcript	5286130	5290878	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	stop_codon	5286127	5286129	.	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5286130	5287401	0.98	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5286130	5287401	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5287402	5287493	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5287494	5287580	0.67	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5287494	5287580	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5287581	5287651	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5287652	5287683	0.67	-	2	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5287652	5287683	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5287684	5287796	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5287797	5287854	1	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5287797	5287854	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5287855	5287960	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5287961	5288016	1	-	2	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5287961	5288016	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5288017	5288110	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5288111	5288153	0.99	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5288111	5288153	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5288154	5288266	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5288267	5288332	0.74	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5288267	5288332	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5288333	5288447	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5288448	5288493	1	-	1	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5288448	5288493	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5288494	5288590	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5288591	5288655	1	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5288591	5288655	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5288656	5288749	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5288750	5288793	0.68	-	2	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5288750	5288793	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5288794	5288930	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5288931	5289097	0.7	-	1	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5288931	5289097	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5289098	5289174	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5289175	5289252	1	-	1	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5289175	5289252	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5289253	5289453	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5289454	5289575	1	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5289454	5289575	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5289576	5289716	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5289717	5289767	1	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5289717	5289767	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5289768	5289922	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5289923	5290018	1	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5289923	5290018	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5290019	5290101	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5290102	5290207	1	-	1	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5290102	5290207	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5290208	5290299	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5290300	5290391	1	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5290300	5290391	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	intron	5290392	5290563	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	CDS	5290564	5290878	0.9	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	exon	5290564	5290878	.	-	.	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
Ledus.S4	AUGUSTUS	start_codon	5290876	5290878	.	-	0	transcript_id "Ledus.S4G071800.t1"; gene_id "Ledus.S4G071800"
# This transcript jg7087.t2 is derived from g6618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7087.t3 is derived from g6618.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7088.t1 is derived from g6619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1486867	1488119	.	-	.	Ledus.C7G014900
Ledus.C7	AUGUSTUS	transcript	1486867	1488119	.	-	.	transcript_id "Ledus.C7G014900.t1"; gene_id "Ledus.C7G014900"
Ledus.C7	AUGUSTUS	stop_codon	1486864	1486866	.	-	0	transcript_id "Ledus.C7G014900.t1"; gene_id "Ledus.C7G014900"
Ledus.C7	AUGUSTUS	CDS	1486867	1486934	1	-	2	transcript_id "Ledus.C7G014900.t1"; gene_id "Ledus.C7G014900"
Ledus.C7	AUGUSTUS	exon	1486867	1486934	.	-	.	transcript_id "Ledus.C7G014900.t1"; gene_id "Ledus.C7G014900"
Ledus.C7	AUGUSTUS	intron	1486935	1487269	.	-	.	transcript_id "Ledus.C7G014900.t1"; gene_id "Ledus.C7G014900"
Ledus.C7	AUGUSTUS	CDS	1487270	1488119	0.64	-	0	transcript_id "Ledus.C7G014900.t1"; gene_id "Ledus.C7G014900"
Ledus.C7	AUGUSTUS	exon	1487270	1488119	.	-	.	transcript_id "Ledus.C7G014900.t1"; gene_id "Ledus.C7G014900"
Ledus.C7	AUGUSTUS	start_codon	1488117	1488119	.	-	0	transcript_id "Ledus.C7G014900.t1"; gene_id "Ledus.C7G014900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3733.t1 is derived from g1169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11249315	11250799	.	+	.	Ledus.S1G115400
Ledus.S1	AUGUSTUS	transcript	11249315	11250799	.	+	.	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	start_codon	11249315	11249317	.	+	0	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	CDS	11249315	11249563	1	+	0	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	exon	11249315	11249563	.	+	.	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	intron	11249564	11249658	.	+	.	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	CDS	11249659	11249853	1	+	0	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	exon	11249659	11249853	.	+	.	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	intron	11249854	11250059	.	+	.	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	CDS	11250060	11250222	0.93	+	0	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	exon	11250060	11250222	.	+	.	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	intron	11250223	11250334	.	+	.	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	CDS	11250335	11250437	1	+	2	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	exon	11250335	11250437	.	+	.	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	intron	11250438	11250537	.	+	.	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	CDS	11250538	11250619	1	+	1	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	exon	11250538	11250619	.	+	.	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	intron	11250620	11250724	.	+	.	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	CDS	11250725	11250799	1	+	0	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	exon	11250725	11250799	.	+	.	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
Ledus.S1	AUGUSTUS	stop_codon	11250800	11250802	.	+	0	transcript_id "Ledus.S1G115400.t1"; gene_id "Ledus.S1G115400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3677.t1 is derived from g1113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10623257	10624240	.	-	.	Ledus.S1G109800
Ledus.S1	AUGUSTUS	transcript	10623257	10624240	.	-	.	transcript_id "Ledus.S1G109800.t1"; gene_id "Ledus.S1G109800"
Ledus.S1	AUGUSTUS	stop_codon	10623254	10623256	.	-	0	transcript_id "Ledus.S1G109800.t1"; gene_id "Ledus.S1G109800"
Ledus.S1	AUGUSTUS	CDS	10623257	10624240	0.94	-	0	transcript_id "Ledus.S1G109800.t1"; gene_id "Ledus.S1G109800"
Ledus.S1	AUGUSTUS	exon	10623257	10624240	.	-	.	transcript_id "Ledus.S1G109800.t1"; gene_id "Ledus.S1G109800"
Ledus.S1	AUGUSTUS	start_codon	10624238	10624240	.	-	0	transcript_id "Ledus.S1G109800.t1"; gene_id "Ledus.S1G109800"
# This transcript jg3219.t2 is derived from g654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3220.t1 is derived from g655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6972593	6974201	.	-	.	Ledus.S1G064100
Ledus.S1	AUGUSTUS	transcript	6972593	6974201	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	stop_codon	6972590	6972592	.	-	0	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	CDS	6972593	6972680	0.9	-	1	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	exon	6972593	6972680	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	intron	6972681	6972778	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	CDS	6972779	6972828	1	-	0	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	exon	6972779	6972828	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	intron	6972829	6972925	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	CDS	6972926	6973022	1	-	1	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	exon	6972926	6973022	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	intron	6973023	6973152	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	CDS	6973153	6973201	1	-	2	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	exon	6973153	6973201	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	intron	6973202	6973282	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	CDS	6973283	6973388	1	-	0	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	exon	6973283	6973388	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	intron	6973389	6973479	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	CDS	6973480	6973620	1	-	0	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	exon	6973480	6973620	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	intron	6973621	6973715	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	CDS	6973716	6973790	1	-	0	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	exon	6973716	6973790	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	intron	6973791	6973874	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	CDS	6973875	6974044	0.98	-	2	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	exon	6973875	6974044	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	intron	6974045	6974119	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	CDS	6974120	6974201	0.97	-	0	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	exon	6974120	6974201	.	-	.	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
Ledus.S1	AUGUSTUS	start_codon	6974199	6974201	.	-	0	transcript_id "Ledus.S1G064100.t1"; gene_id "Ledus.S1G064100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9423.t1 is derived from g10453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6647763	6652632	.	+	.	Ledus.S3G090000
Ledus.S3	AUGUSTUS	transcript	6647763	6652632	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	start_codon	6647763	6647765	.	+	0	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6647763	6647991	0.38	+	0	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6647763	6647991	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6647992	6648178	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6648179	6648335	0.88	+	2	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6648179	6648335	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6648336	6648411	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6648412	6648502	0.96	+	1	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6648412	6648502	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6648503	6648615	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6648616	6648720	0.62	+	0	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6648616	6648720	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6648721	6648840	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6648841	6649079	0.75	+	0	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6648841	6649079	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6649080	6649199	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6649200	6649470	0.57	+	1	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6649200	6649470	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6649471	6649573	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6649574	6649797	0.98	+	0	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6649574	6649797	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6649798	6649897	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6649898	6650048	0.7	+	1	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6649898	6650048	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6650049	6650161	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6650162	6650362	1	+	0	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6650162	6650362	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6650363	6650446	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6650447	6650524	1	+	0	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6650447	6650524	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6650525	6650614	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6650615	6650803	1	+	0	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6650615	6650803	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6650804	6650895	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6650896	6651165	0.86	+	0	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6650896	6651165	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6651166	6651275	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6651276	6651400	0.67	+	0	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6651276	6651400	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6651401	6651523	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6651524	6652043	0.63	+	1	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6651524	6652043	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6652044	6652150	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6652151	6652407	0.42	+	0	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6652151	6652407	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	intron	6652408	6652553	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	CDS	6652554	6652632	0.49	+	1	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	exon	6652554	6652632	.	+	.	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
Ledus.S3	AUGUSTUS	stop_codon	6652633	6652635	.	+	0	transcript_id "Ledus.S3G090000.t1"; gene_id "Ledus.S3G090000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg942.t1 is derived from g7803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6245382	6245819	.	+	.	Ledus.S2G082400
Ledus.S2	AUGUSTUS	transcript	6245382	6245819	.	+	.	transcript_id "Ledus.S2G082400.t1"; gene_id "Ledus.S2G082400"
Ledus.S2	AUGUSTUS	start_codon	6245382	6245384	.	+	0	transcript_id "Ledus.S2G082400.t1"; gene_id "Ledus.S2G082400"
Ledus.S2	AUGUSTUS	CDS	6245382	6245566	0.97	+	0	transcript_id "Ledus.S2G082400.t1"; gene_id "Ledus.S2G082400"
Ledus.S2	AUGUSTUS	exon	6245382	6245566	.	+	.	transcript_id "Ledus.S2G082400.t1"; gene_id "Ledus.S2G082400"
Ledus.S2	AUGUSTUS	intron	6245567	6245767	.	+	.	transcript_id "Ledus.S2G082400.t1"; gene_id "Ledus.S2G082400"
Ledus.S2	AUGUSTUS	CDS	6245768	6245819	0.99	+	1	transcript_id "Ledus.S2G082400.t1"; gene_id "Ledus.S2G082400"
Ledus.S2	AUGUSTUS	exon	6245768	6245819	.	+	.	transcript_id "Ledus.S2G082400.t1"; gene_id "Ledus.S2G082400"
Ledus.S2	AUGUSTUS	stop_codon	6245820	6245822	.	+	0	transcript_id "Ledus.S2G082400.t1"; gene_id "Ledus.S2G082400"
# This transcript jg12253.t2 is derived from g5873.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12254.t1 is derived from g5874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10653357	10655027	.	+	.	Ledus.S4G141000
Ledus.S4	AUGUSTUS	transcript	10653357	10655027	.	+	.	transcript_id "Ledus.S4G141000.t1"; gene_id "Ledus.S4G141000"
Ledus.S4	AUGUSTUS	start_codon	10653357	10653359	.	+	0	transcript_id "Ledus.S4G141000.t1"; gene_id "Ledus.S4G141000"
Ledus.S4	AUGUSTUS	CDS	10653357	10654121	1	+	0	transcript_id "Ledus.S4G141000.t1"; gene_id "Ledus.S4G141000"
Ledus.S4	AUGUSTUS	exon	10653357	10654121	.	+	.	transcript_id "Ledus.S4G141000.t1"; gene_id "Ledus.S4G141000"
Ledus.S4	AUGUSTUS	intron	10654122	10654238	.	+	.	transcript_id "Ledus.S4G141000.t1"; gene_id "Ledus.S4G141000"
Ledus.S4	AUGUSTUS	CDS	10654239	10655027	0.73	+	0	transcript_id "Ledus.S4G141000.t1"; gene_id "Ledus.S4G141000"
Ledus.S4	AUGUSTUS	exon	10654239	10655027	.	+	.	transcript_id "Ledus.S4G141000.t1"; gene_id "Ledus.S4G141000"
Ledus.S4	AUGUSTUS	stop_codon	10655028	10655030	.	+	0	transcript_id "Ledus.S4G141000.t1"; gene_id "Ledus.S4G141000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8385.t1 is derived from g13057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11423867	11426276	.	-	.	Ledus.S5G116300
Ledus.S5	AUGUSTUS	transcript	11423867	11426276	.	-	.	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	stop_codon	11423864	11423866	.	-	0	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	CDS	11423867	11423910	1	-	2	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	exon	11423867	11423910	.	-	.	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	intron	11423911	11424045	.	-	.	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	CDS	11424046	11424442	0.99	-	0	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	exon	11424046	11424442	.	-	.	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	intron	11424443	11424599	.	-	.	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	CDS	11424600	11424683	1	-	0	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	exon	11424600	11424683	.	-	.	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	intron	11424684	11424802	.	-	.	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	CDS	11424803	11424887	1	-	1	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	exon	11424803	11424887	.	-	.	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	intron	11424888	11425196	.	-	.	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	CDS	11425197	11425426	1	-	0	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	exon	11425197	11425426	.	-	.	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	intron	11425427	11426126	.	-	.	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	CDS	11426127	11426276	1	-	0	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	exon	11426127	11426276	.	-	.	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
Ledus.S5	AUGUSTUS	start_codon	11426274	11426276	.	-	0	transcript_id "Ledus.S5G116300.t1"; gene_id "Ledus.S5G116300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10076.t1 is derived from g11106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12536358	12536958	.	+	.	Ledus.S3G155300
Ledus.S3	AUGUSTUS	transcript	12536358	12536958	.	+	.	transcript_id "Ledus.S3G155300.t1"; gene_id "Ledus.S3G155300"
Ledus.S3	AUGUSTUS	start_codon	12536358	12536360	.	+	0	transcript_id "Ledus.S3G155300.t1"; gene_id "Ledus.S3G155300"
Ledus.S3	AUGUSTUS	CDS	12536358	12536522	0.2	+	0	transcript_id "Ledus.S3G155300.t1"; gene_id "Ledus.S3G155300"
Ledus.S3	AUGUSTUS	exon	12536358	12536522	.	+	.	transcript_id "Ledus.S3G155300.t1"; gene_id "Ledus.S3G155300"
Ledus.S3	AUGUSTUS	intron	12536523	12536677	.	+	.	transcript_id "Ledus.S3G155300.t1"; gene_id "Ledus.S3G155300"
Ledus.S3	AUGUSTUS	CDS	12536678	12536785	0.57	+	0	transcript_id "Ledus.S3G155300.t1"; gene_id "Ledus.S3G155300"
Ledus.S3	AUGUSTUS	exon	12536678	12536785	.	+	.	transcript_id "Ledus.S3G155300.t1"; gene_id "Ledus.S3G155300"
Ledus.S3	AUGUSTUS	intron	12536786	12536856	.	+	.	transcript_id "Ledus.S3G155300.t1"; gene_id "Ledus.S3G155300"
Ledus.S3	AUGUSTUS	CDS	12536857	12536958	0.86	+	0	transcript_id "Ledus.S3G155300.t1"; gene_id "Ledus.S3G155300"
Ledus.S3	AUGUSTUS	exon	12536857	12536958	.	+	.	transcript_id "Ledus.S3G155300.t1"; gene_id "Ledus.S3G155300"
Ledus.S3	AUGUSTUS	stop_codon	12536959	12536961	.	+	0	transcript_id "Ledus.S3G155300.t1"; gene_id "Ledus.S3G155300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5223.t1 is derived from g2662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22552100	22555428	.	+	.	Ledus.S1G264400
Ledus.S1	AUGUSTUS	transcript	22552100	22555428	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	start_codon	22552100	22552102	.	+	0	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22552100	22552210	0.59	+	0	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22552100	22552210	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	intron	22552211	22552311	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22552312	22552369	0.57	+	0	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22552312	22552369	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	intron	22552370	22552509	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22552510	22552775	0.45	+	2	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22552510	22552775	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	intron	22552776	22552857	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22552858	22552974	0.98	+	0	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22552858	22552974	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	intron	22552975	22553514	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22553515	22553589	0.92	+	0	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22553515	22553589	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	intron	22553590	22553728	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22553729	22553814	1	+	0	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22553729	22553814	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	intron	22553815	22553990	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22553991	22554040	1	+	1	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22553991	22554040	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	intron	22554041	22554147	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22554148	22554188	1	+	2	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22554148	22554188	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	intron	22554189	22554290	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22554291	22554491	0.99	+	0	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22554291	22554491	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	intron	22554492	22554583	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22554584	22554619	0.75	+	0	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22554584	22554619	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	intron	22554620	22554725	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22554726	22554793	1	+	0	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22554726	22554793	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	intron	22554794	22554890	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22554891	22554951	1	+	1	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22554891	22554951	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	intron	22554952	22555041	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	CDS	22555042	22555428	0.97	+	0	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	exon	22555042	22555428	.	+	.	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
Ledus.S1	AUGUSTUS	stop_codon	22555429	22555431	.	+	0	transcript_id "Ledus.S1G264400.t1"; gene_id "Ledus.S1G264400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6548.t1 is derived from g3991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32256277	32257193	.	-	.	Ledus.S1G396900
Ledus.S1	AUGUSTUS	transcript	32256277	32257193	.	-	.	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	stop_codon	32256274	32256276	.	-	0	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	CDS	32256277	32256349	1	-	1	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	exon	32256277	32256349	.	-	.	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	intron	32256350	32256427	.	-	.	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	CDS	32256428	32256611	1	-	2	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	exon	32256428	32256611	.	-	.	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	intron	32256612	32256875	.	-	.	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	CDS	32256876	32256966	1	-	0	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	exon	32256876	32256966	.	-	.	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	intron	32256967	32257106	.	-	.	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	CDS	32257107	32257193	1	-	0	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	exon	32257107	32257193	.	-	.	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
Ledus.S1	AUGUSTUS	start_codon	32257191	32257193	.	-	0	transcript_id "Ledus.S1G396900.t1"; gene_id "Ledus.S1G396900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6667.t1 is derived from g4110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32967055	32967615	.	-	.	Ledus.S1G408800
Ledus.S1	AUGUSTUS	transcript	32967055	32967615	.	-	.	transcript_id "Ledus.S1G408800.t1"; gene_id "Ledus.S1G408800"
Ledus.S1	AUGUSTUS	stop_codon	32967052	32967054	.	-	0	transcript_id "Ledus.S1G408800.t1"; gene_id "Ledus.S1G408800"
Ledus.S1	AUGUSTUS	CDS	32967055	32967082	0.92	-	1	transcript_id "Ledus.S1G408800.t1"; gene_id "Ledus.S1G408800"
Ledus.S1	AUGUSTUS	exon	32967055	32967082	.	-	.	transcript_id "Ledus.S1G408800.t1"; gene_id "Ledus.S1G408800"
Ledus.S1	AUGUSTUS	intron	32967083	32967227	.	-	.	transcript_id "Ledus.S1G408800.t1"; gene_id "Ledus.S1G408800"
Ledus.S1	AUGUSTUS	CDS	32967228	32967427	1	-	0	transcript_id "Ledus.S1G408800.t1"; gene_id "Ledus.S1G408800"
Ledus.S1	AUGUSTUS	exon	32967228	32967427	.	-	.	transcript_id "Ledus.S1G408800.t1"; gene_id "Ledus.S1G408800"
Ledus.S1	AUGUSTUS	intron	32967428	32967513	.	-	.	transcript_id "Ledus.S1G408800.t1"; gene_id "Ledus.S1G408800"
Ledus.S1	AUGUSTUS	CDS	32967514	32967615	1	-	0	transcript_id "Ledus.S1G408800.t1"; gene_id "Ledus.S1G408800"
Ledus.S1	AUGUSTUS	exon	32967514	32967615	.	-	.	transcript_id "Ledus.S1G408800.t1"; gene_id "Ledus.S1G408800"
Ledus.S1	AUGUSTUS	start_codon	32967613	32967615	.	-	0	transcript_id "Ledus.S1G408800.t1"; gene_id "Ledus.S1G408800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4587.t1 is derived from g2024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17934680	17935170	.	-	.	Ledus.S1G200800
Ledus.S1	AUGUSTUS	transcript	17934680	17935170	.	-	.	transcript_id "Ledus.S1G200800.t1"; gene_id "Ledus.S1G200800"
Ledus.S1	AUGUSTUS	stop_codon	17934677	17934679	.	-	0	transcript_id "Ledus.S1G200800.t1"; gene_id "Ledus.S1G200800"
Ledus.S1	AUGUSTUS	CDS	17934680	17934823	0.71	-	0	transcript_id "Ledus.S1G200800.t1"; gene_id "Ledus.S1G200800"
Ledus.S1	AUGUSTUS	exon	17934680	17934823	.	-	.	transcript_id "Ledus.S1G200800.t1"; gene_id "Ledus.S1G200800"
Ledus.S1	AUGUSTUS	intron	17934824	17934960	.	-	.	transcript_id "Ledus.S1G200800.t1"; gene_id "Ledus.S1G200800"
Ledus.S1	AUGUSTUS	CDS	17934961	17935170	0.98	-	0	transcript_id "Ledus.S1G200800.t1"; gene_id "Ledus.S1G200800"
Ledus.S1	AUGUSTUS	exon	17934961	17935170	.	-	.	transcript_id "Ledus.S1G200800.t1"; gene_id "Ledus.S1G200800"
Ledus.S1	AUGUSTUS	start_codon	17935168	17935170	.	-	0	transcript_id "Ledus.S1G200800.t1"; gene_id "Ledus.S1G200800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10685.t1 is derived from g11715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17080747	17084074	.	-	.	Ledus.S3G216200
Ledus.S3	AUGUSTUS	transcript	17080747	17084074	.	-	.	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	stop_codon	17080744	17080746	.	-	0	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	CDS	17080747	17081915	0.98	-	2	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	exon	17080747	17081915	.	-	.	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	intron	17081916	17082018	.	-	.	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	CDS	17082019	17082346	0.99	-	0	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	exon	17082019	17082346	.	-	.	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	intron	17082347	17082518	.	-	.	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	CDS	17082519	17083603	1	-	2	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	exon	17082519	17083603	.	-	.	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	intron	17083604	17083813	.	-	.	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	CDS	17083814	17083912	1	-	2	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	exon	17083814	17083912	.	-	.	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	intron	17083913	17084055	.	-	.	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	CDS	17084056	17084074	1	-	0	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	exon	17084056	17084074	.	-	.	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
Ledus.S3	AUGUSTUS	start_codon	17084072	17084074	.	-	0	transcript_id "Ledus.S3G216200.t1"; gene_id "Ledus.S3G216200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1926.t1 is derived from g8789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13470213	13471493	.	-	.	Ledus.S2G180800
Ledus.S2	AUGUSTUS	transcript	13470213	13471493	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	stop_codon	13470210	13470212	.	-	0	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	CDS	13470213	13470278	1	-	0	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	exon	13470213	13470278	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	intron	13470279	13470394	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	CDS	13470395	13470463	1	-	0	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	exon	13470395	13470463	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	intron	13470464	13470571	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	CDS	13470572	13470660	1	-	2	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	exon	13470572	13470660	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	intron	13470661	13470752	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	CDS	13470753	13470849	1	-	0	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	exon	13470753	13470849	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	intron	13470850	13470937	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	CDS	13470938	13471091	1	-	1	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	exon	13470938	13471091	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	intron	13471092	13471176	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	CDS	13471177	13471291	1	-	2	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	exon	13471177	13471291	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	intron	13471292	13471378	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	CDS	13471379	13471493	0.98	-	0	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	exon	13471379	13471493	.	-	.	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
Ledus.S2	AUGUSTUS	start_codon	13471491	13471493	.	-	0	transcript_id "Ledus.S2G180800.t1"; gene_id "Ledus.S2G180800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3321.t1 is derived from g756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7454313	7455388	.	+	.	Ledus.S1G074200
Ledus.S1	AUGUSTUS	transcript	7454313	7455388	.	+	.	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	start_codon	7454313	7454315	.	+	0	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	CDS	7454313	7454374	0.95	+	0	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	exon	7454313	7454374	.	+	.	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	intron	7454375	7454473	.	+	.	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	CDS	7454474	7454650	1	+	1	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	exon	7454474	7454650	.	+	.	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	intron	7454651	7454744	.	+	.	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	CDS	7454745	7455160	1	+	1	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	exon	7454745	7455160	.	+	.	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	intron	7455161	7455254	.	+	.	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	CDS	7455255	7455388	1	+	2	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	exon	7455255	7455388	.	+	.	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
Ledus.S1	AUGUSTUS	stop_codon	7455389	7455391	.	+	0	transcript_id "Ledus.S1G074200.t1"; gene_id "Ledus.S1G074200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2445.t1 is derived from g9308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18129829	18131440	.	+	.	Ledus.S2G232700
Ledus.S2	AUGUSTUS	transcript	18129829	18131440	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	start_codon	18129829	18129831	.	+	0	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18129829	18129939	0.74	+	0	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18129829	18129939	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18129940	18130024	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18130025	18130205	1	+	0	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18130025	18130205	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18130206	18130298	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18130299	18130445	1	+	2	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18130299	18130445	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18130446	18130546	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18130547	18130602	1	+	2	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18130547	18130602	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18130603	18130679	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18130680	18130763	1	+	0	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18130680	18130763	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18130764	18130861	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18130862	18130954	1	+	0	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18130862	18130954	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18130955	18131037	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18131038	18131105	1	+	0	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18131038	18131105	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18131106	18131191	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18131192	18131265	1	+	1	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18131192	18131265	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18131266	18131348	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18131349	18131440	1	+	2	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18131349	18131440	.	+	.	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	stop_codon	18131441	18131443	.	+	0	transcript_id "Ledus.S2G232700.t1"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	transcript	18129829	18131440	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	start_codon	18129829	18129831	.	+	0	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18129829	18129939	0.74	+	0	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18129829	18129939	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18129940	18130024	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18130025	18130205	1	+	0	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18130025	18130205	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18130206	18130298	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18130299	18130445	1	+	2	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18130299	18130445	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18130446	18130546	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18130547	18130602	1	+	2	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18130547	18130602	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18130603	18130661	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18130662	18130763	0.98	+	0	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18130662	18130763	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18130764	18130861	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18130862	18130954	1	+	0	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18130862	18130954	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18130955	18131037	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18131038	18131105	1	+	0	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18131038	18131105	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18131106	18131191	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18131192	18131265	1	+	1	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18131192	18131265	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	intron	18131266	18131348	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	CDS	18131349	18131440	1	+	2	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	exon	18131349	18131440	.	+	.	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
Ledus.S2	AUGUSTUS	stop_codon	18131441	18131443	.	+	0	transcript_id "Ledus.S2G232700.t2"; gene_id "Ledus.S2G232700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12874.t1 is derived from g4447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	183341	183586	.	+	.	Ledus.C10G001700
Ledus.C10	AUGUSTUS	transcript	183341	183586	.	+	.	transcript_id "Ledus.C10G001700.t1"; gene_id "Ledus.C10G001700"
Ledus.C10	AUGUSTUS	start_codon	183341	183343	.	+	0	transcript_id "Ledus.C10G001700.t1"; gene_id "Ledus.C10G001700"
Ledus.C10	AUGUSTUS	CDS	183341	183586	0.7	+	0	transcript_id "Ledus.C10G001700.t1"; gene_id "Ledus.C10G001700"
Ledus.C10	AUGUSTUS	exon	183341	183586	.	+	.	transcript_id "Ledus.C10G001700.t1"; gene_id "Ledus.C10G001700"
Ledus.C10	AUGUSTUS	stop_codon	183587	183589	.	+	0	transcript_id "Ledus.C10G001700.t1"; gene_id "Ledus.C10G001700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8185.t1 is derived from g12856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9716253	9716767	.	+	.	Ledus.S5G096300
Ledus.S5	AUGUSTUS	transcript	9716253	9716767	.	+	.	transcript_id "Ledus.S5G096300.t1"; gene_id "Ledus.S5G096300"
Ledus.S5	AUGUSTUS	start_codon	9716253	9716255	.	+	0	transcript_id "Ledus.S5G096300.t1"; gene_id "Ledus.S5G096300"
Ledus.S5	AUGUSTUS	CDS	9716253	9716666	0.81	+	0	transcript_id "Ledus.S5G096300.t1"; gene_id "Ledus.S5G096300"
Ledus.S5	AUGUSTUS	exon	9716253	9716666	.	+	.	transcript_id "Ledus.S5G096300.t1"; gene_id "Ledus.S5G096300"
Ledus.S5	AUGUSTUS	intron	9716667	9716761	.	+	.	transcript_id "Ledus.S5G096300.t1"; gene_id "Ledus.S5G096300"
Ledus.S5	AUGUSTUS	CDS	9716762	9716767	1	+	0	transcript_id "Ledus.S5G096300.t1"; gene_id "Ledus.S5G096300"
Ledus.S5	AUGUSTUS	exon	9716762	9716767	.	+	.	transcript_id "Ledus.S5G096300.t1"; gene_id "Ledus.S5G096300"
Ledus.S5	AUGUSTUS	stop_codon	9716768	9716770	.	+	0	transcript_id "Ledus.S5G096300.t1"; gene_id "Ledus.S5G096300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8451.t1 is derived from g13123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11754923	11755872	.	+	.	Ledus.S5G122900
Ledus.S5	AUGUSTUS	transcript	11754923	11755872	.	+	.	transcript_id "Ledus.S5G122900.t1"; gene_id "Ledus.S5G122900"
Ledus.S5	AUGUSTUS	start_codon	11754923	11754925	.	+	0	transcript_id "Ledus.S5G122900.t1"; gene_id "Ledus.S5G122900"
Ledus.S5	AUGUSTUS	CDS	11754923	11755657	0.4	+	0	transcript_id "Ledus.S5G122900.t1"; gene_id "Ledus.S5G122900"
Ledus.S5	AUGUSTUS	exon	11754923	11755657	.	+	.	transcript_id "Ledus.S5G122900.t1"; gene_id "Ledus.S5G122900"
Ledus.S5	AUGUSTUS	intron	11755658	11755773	.	+	.	transcript_id "Ledus.S5G122900.t1"; gene_id "Ledus.S5G122900"
Ledus.S5	AUGUSTUS	CDS	11755774	11755872	0.54	+	0	transcript_id "Ledus.S5G122900.t1"; gene_id "Ledus.S5G122900"
Ledus.S5	AUGUSTUS	exon	11755774	11755872	.	+	.	transcript_id "Ledus.S5G122900.t1"; gene_id "Ledus.S5G122900"
Ledus.S5	AUGUSTUS	stop_codon	11755873	11755875	.	+	0	transcript_id "Ledus.S5G122900.t1"; gene_id "Ledus.S5G122900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7192.t1 is derived from g6723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2058095	2059557	.	+	.	Ledus.C7G025300
Ledus.C7	AUGUSTUS	transcript	2058095	2059557	.	+	.	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	start_codon	2058095	2058097	.	+	0	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	CDS	2058095	2058247	0.93	+	0	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	exon	2058095	2058247	.	+	.	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	intron	2058248	2058337	.	+	.	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	CDS	2058338	2058936	1	+	0	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	exon	2058338	2058936	.	+	.	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	intron	2058937	2059030	.	+	.	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	CDS	2059031	2059139	1	+	1	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	exon	2059031	2059139	.	+	.	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	intron	2059140	2059230	.	+	.	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	CDS	2059231	2059557	1	+	0	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	exon	2059231	2059557	.	+	.	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
Ledus.C7	AUGUSTUS	stop_codon	2059558	2059560	.	+	0	transcript_id "Ledus.C7G025300.t1"; gene_id "Ledus.C7G025300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4759.t1 is derived from g2197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19630275	19631257	.	+	.	Ledus.S1G218000
Ledus.S1	AUGUSTUS	transcript	19630275	19631257	.	+	.	transcript_id "Ledus.S1G218000.t1"; gene_id "Ledus.S1G218000"
Ledus.S1	AUGUSTUS	start_codon	19630275	19630277	.	+	0	transcript_id "Ledus.S1G218000.t1"; gene_id "Ledus.S1G218000"
Ledus.S1	AUGUSTUS	CDS	19630275	19630369	0.6	+	0	transcript_id "Ledus.S1G218000.t1"; gene_id "Ledus.S1G218000"
Ledus.S1	AUGUSTUS	exon	19630275	19630369	.	+	.	transcript_id "Ledus.S1G218000.t1"; gene_id "Ledus.S1G218000"
Ledus.S1	AUGUSTUS	intron	19630370	19630458	.	+	.	transcript_id "Ledus.S1G218000.t1"; gene_id "Ledus.S1G218000"
Ledus.S1	AUGUSTUS	CDS	19630459	19630718	0.53	+	1	transcript_id "Ledus.S1G218000.t1"; gene_id "Ledus.S1G218000"
Ledus.S1	AUGUSTUS	exon	19630459	19630718	.	+	.	transcript_id "Ledus.S1G218000.t1"; gene_id "Ledus.S1G218000"
Ledus.S1	AUGUSTUS	intron	19630719	19630874	.	+	.	transcript_id "Ledus.S1G218000.t1"; gene_id "Ledus.S1G218000"
Ledus.S1	AUGUSTUS	CDS	19630875	19631257	0.82	+	2	transcript_id "Ledus.S1G218000.t1"; gene_id "Ledus.S1G218000"
Ledus.S1	AUGUSTUS	exon	19630875	19631257	.	+	.	transcript_id "Ledus.S1G218000.t1"; gene_id "Ledus.S1G218000"
Ledus.S1	AUGUSTUS	stop_codon	19631258	19631260	.	+	0	transcript_id "Ledus.S1G218000.t1"; gene_id "Ledus.S1G218000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12992.t1 is derived from g6802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2038278	2038707	.	-	.	Ledus.S6G005400
Ledus.S6	AUGUSTUS	transcript	2038278	2038707	.	-	.	transcript_id "Ledus.S6G005400.t1"; gene_id "Ledus.S6G005400"
Ledus.S6	AUGUSTUS	stop_codon	2038275	2038277	.	-	0	transcript_id "Ledus.S6G005400.t1"; gene_id "Ledus.S6G005400"
Ledus.S6	AUGUSTUS	CDS	2038278	2038358	0.4	-	0	transcript_id "Ledus.S6G005400.t1"; gene_id "Ledus.S6G005400"
Ledus.S6	AUGUSTUS	exon	2038278	2038358	.	-	.	transcript_id "Ledus.S6G005400.t1"; gene_id "Ledus.S6G005400"
Ledus.S6	AUGUSTUS	intron	2038359	2038476	.	-	.	transcript_id "Ledus.S6G005400.t1"; gene_id "Ledus.S6G005400"
Ledus.S6	AUGUSTUS	CDS	2038477	2038707	0.6	-	0	transcript_id "Ledus.S6G005400.t1"; gene_id "Ledus.S6G005400"
Ledus.S6	AUGUSTUS	exon	2038477	2038707	.	-	.	transcript_id "Ledus.S6G005400.t1"; gene_id "Ledus.S6G005400"
Ledus.S6	AUGUSTUS	start_codon	2038705	2038707	.	-	0	transcript_id "Ledus.S6G005400.t1"; gene_id "Ledus.S6G005400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2272.t1 is derived from g9135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16827347	16830914	.	+	.	Ledus.S2G215400
Ledus.S2	AUGUSTUS	transcript	16827347	16830914	.	+	.	transcript_id "Ledus.S2G215400.t1"; gene_id "Ledus.S2G215400"
Ledus.S2	AUGUSTUS	start_codon	16827347	16827349	.	+	0	transcript_id "Ledus.S2G215400.t1"; gene_id "Ledus.S2G215400"
Ledus.S2	AUGUSTUS	CDS	16827347	16828610	0.37	+	0	transcript_id "Ledus.S2G215400.t1"; gene_id "Ledus.S2G215400"
Ledus.S2	AUGUSTUS	exon	16827347	16828610	.	+	.	transcript_id "Ledus.S2G215400.t1"; gene_id "Ledus.S2G215400"
Ledus.S2	AUGUSTUS	intron	16828611	16828686	.	+	.	transcript_id "Ledus.S2G215400.t1"; gene_id "Ledus.S2G215400"
Ledus.S2	AUGUSTUS	CDS	16828687	16830914	0.6	+	2	transcript_id "Ledus.S2G215400.t1"; gene_id "Ledus.S2G215400"
Ledus.S2	AUGUSTUS	exon	16828687	16830914	.	+	.	transcript_id "Ledus.S2G215400.t1"; gene_id "Ledus.S2G215400"
Ledus.S2	AUGUSTUS	stop_codon	16830915	16830917	.	+	0	transcript_id "Ledus.S2G215400.t1"; gene_id "Ledus.S2G215400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1105.t1 is derived from g7966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7549045	7549338	.	-	.	Ledus.S2G098700
Ledus.S2	AUGUSTUS	transcript	7549045	7549338	.	-	.	transcript_id "Ledus.S2G098700.t1"; gene_id "Ledus.S2G098700"
Ledus.S2	AUGUSTUS	stop_codon	7549042	7549044	.	-	0	transcript_id "Ledus.S2G098700.t1"; gene_id "Ledus.S2G098700"
Ledus.S2	AUGUSTUS	CDS	7549045	7549338	0.78	-	0	transcript_id "Ledus.S2G098700.t1"; gene_id "Ledus.S2G098700"
Ledus.S2	AUGUSTUS	exon	7549045	7549338	.	-	.	transcript_id "Ledus.S2G098700.t1"; gene_id "Ledus.S2G098700"
Ledus.S2	AUGUSTUS	start_codon	7549336	7549338	.	-	0	transcript_id "Ledus.S2G098700.t1"; gene_id "Ledus.S2G098700"
# This transcript jg3853.t2 is derived from g1289.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3854.t1 is derived from g1290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13189914	13190966	.	+	.	Ledus.S1G127500
Ledus.S1	AUGUSTUS	transcript	13189914	13190966	.	+	.	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	start_codon	13189914	13189916	.	+	0	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	CDS	13189914	13190341	0.97	+	0	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	exon	13189914	13190341	.	+	.	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	intron	13190342	13190444	.	+	.	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	CDS	13190445	13190552	1	+	1	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	exon	13190445	13190552	.	+	.	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	intron	13190553	13190649	.	+	.	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	CDS	13190650	13190805	1	+	1	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	exon	13190650	13190805	.	+	.	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	intron	13190806	13190893	.	+	.	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	CDS	13190894	13190966	0.99	+	1	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	exon	13190894	13190966	.	+	.	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
Ledus.S1	AUGUSTUS	stop_codon	13190967	13190969	.	+	0	transcript_id "Ledus.S1G127500.t1"; gene_id "Ledus.S1G127500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6198.t1 is derived from g3641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29591703	29594411	.	+	.	Ledus.S1G361900
Ledus.S1	AUGUSTUS	transcript	29591703	29594411	.	+	.	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	start_codon	29591703	29591705	.	+	0	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	CDS	29591703	29591998	0.99	+	0	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	exon	29591703	29591998	.	+	.	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	intron	29591999	29592294	.	+	.	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	CDS	29592295	29592396	1	+	1	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	exon	29592295	29592396	.	+	.	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	intron	29592397	29592492	.	+	.	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	CDS	29592493	29592945	0.99	+	1	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	exon	29592493	29592945	.	+	.	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	intron	29592946	29593093	.	+	.	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	CDS	29593094	29593458	0.97	+	1	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	exon	29593094	29593458	.	+	.	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	intron	29593459	29593571	.	+	.	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	CDS	29593572	29594106	1	+	2	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	exon	29593572	29594106	.	+	.	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	intron	29594107	29594353	.	+	.	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	CDS	29594354	29594411	0.85	+	1	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	exon	29594354	29594411	.	+	.	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
Ledus.S1	AUGUSTUS	stop_codon	29594412	29594414	.	+	0	transcript_id "Ledus.S1G361900.t1"; gene_id "Ledus.S1G361900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4273.t1 is derived from g1709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15893794	15895140	.	-	.	Ledus.S1G169400
Ledus.S1	AUGUSTUS	transcript	15893794	15895140	.	-	.	transcript_id "Ledus.S1G169400.t1"; gene_id "Ledus.S1G169400"
Ledus.S1	AUGUSTUS	stop_codon	15893791	15893793	.	-	0	transcript_id "Ledus.S1G169400.t1"; gene_id "Ledus.S1G169400"
Ledus.S1	AUGUSTUS	CDS	15893794	15895140	0.75	-	0	transcript_id "Ledus.S1G169400.t1"; gene_id "Ledus.S1G169400"
Ledus.S1	AUGUSTUS	exon	15893794	15895140	.	-	.	transcript_id "Ledus.S1G169400.t1"; gene_id "Ledus.S1G169400"
Ledus.S1	AUGUSTUS	start_codon	15895138	15895140	.	-	0	transcript_id "Ledus.S1G169400.t1"; gene_id "Ledus.S1G169400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8922.t1 is derived from g9952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3163340	3164163	.	-	.	Ledus.S3G039900
Ledus.S3	AUGUSTUS	transcript	3163340	3164163	.	-	.	transcript_id "Ledus.S3G039900.t1"; gene_id "Ledus.S3G039900"
Ledus.S3	AUGUSTUS	stop_codon	3163337	3163339	.	-	0	transcript_id "Ledus.S3G039900.t1"; gene_id "Ledus.S3G039900"
Ledus.S3	AUGUSTUS	CDS	3163340	3163920	0.86	-	2	transcript_id "Ledus.S3G039900.t1"; gene_id "Ledus.S3G039900"
Ledus.S3	AUGUSTUS	exon	3163340	3163920	.	-	.	transcript_id "Ledus.S3G039900.t1"; gene_id "Ledus.S3G039900"
Ledus.S3	AUGUSTUS	intron	3163921	3164006	.	-	.	transcript_id "Ledus.S3G039900.t1"; gene_id "Ledus.S3G039900"
Ledus.S3	AUGUSTUS	CDS	3164007	3164163	1	-	0	transcript_id "Ledus.S3G039900.t1"; gene_id "Ledus.S3G039900"
Ledus.S3	AUGUSTUS	exon	3164007	3164163	.	-	.	transcript_id "Ledus.S3G039900.t1"; gene_id "Ledus.S3G039900"
Ledus.S3	AUGUSTUS	start_codon	3164161	3164163	.	-	0	transcript_id "Ledus.S3G039900.t1"; gene_id "Ledus.S3G039900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5274.t1 is derived from g2713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22818361	22819839	.	+	.	Ledus.S1G269500
Ledus.S1	AUGUSTUS	transcript	22818361	22819839	.	+	.	transcript_id "Ledus.S1G269500.t1"; gene_id "Ledus.S1G269500"
Ledus.S1	AUGUSTUS	start_codon	22818361	22818363	.	+	0	transcript_id "Ledus.S1G269500.t1"; gene_id "Ledus.S1G269500"
Ledus.S1	AUGUSTUS	CDS	22818361	22819839	0.97	+	0	transcript_id "Ledus.S1G269500.t1"; gene_id "Ledus.S1G269500"
Ledus.S1	AUGUSTUS	exon	22818361	22819839	.	+	.	transcript_id "Ledus.S1G269500.t1"; gene_id "Ledus.S1G269500"
Ledus.S1	AUGUSTUS	stop_codon	22819840	22819842	.	+	0	transcript_id "Ledus.S1G269500.t1"; gene_id "Ledus.S1G269500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11328.t1 is derived from g4946.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3603729	3604473	.	+	.	Ledus.S4G048400
Ledus.S4	AUGUSTUS	transcript	3603729	3604473	.	+	.	transcript_id "Ledus.S4G048400.t1"; gene_id "Ledus.S4G048400"
Ledus.S4	AUGUSTUS	start_codon	3603729	3603731	.	+	0	transcript_id "Ledus.S4G048400.t1"; gene_id "Ledus.S4G048400"
Ledus.S4	AUGUSTUS	CDS	3603729	3603923	0.65	+	0	transcript_id "Ledus.S4G048400.t1"; gene_id "Ledus.S4G048400"
Ledus.S4	AUGUSTUS	exon	3603729	3603923	.	+	.	transcript_id "Ledus.S4G048400.t1"; gene_id "Ledus.S4G048400"
Ledus.S4	AUGUSTUS	intron	3603924	3604023	.	+	.	transcript_id "Ledus.S4G048400.t1"; gene_id "Ledus.S4G048400"
Ledus.S4	AUGUSTUS	CDS	3604024	3604155	1	+	0	transcript_id "Ledus.S4G048400.t1"; gene_id "Ledus.S4G048400"
Ledus.S4	AUGUSTUS	exon	3604024	3604155	.	+	.	transcript_id "Ledus.S4G048400.t1"; gene_id "Ledus.S4G048400"
Ledus.S4	AUGUSTUS	intron	3604156	3604254	.	+	.	transcript_id "Ledus.S4G048400.t1"; gene_id "Ledus.S4G048400"
Ledus.S4	AUGUSTUS	CDS	3604255	3604473	1	+	0	transcript_id "Ledus.S4G048400.t1"; gene_id "Ledus.S4G048400"
Ledus.S4	AUGUSTUS	exon	3604255	3604473	.	+	.	transcript_id "Ledus.S4G048400.t1"; gene_id "Ledus.S4G048400"
Ledus.S4	AUGUSTUS	stop_codon	3604474	3604476	.	+	0	transcript_id "Ledus.S4G048400.t1"; gene_id "Ledus.S4G048400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3816.t1 is derived from g1252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12602914	12603474	.	+	.	Ledus.S1G123700
Ledus.S1	AUGUSTUS	transcript	12602914	12603474	.	+	.	transcript_id "Ledus.S1G123700.t1"; gene_id "Ledus.S1G123700"
Ledus.S1	AUGUSTUS	start_codon	12602914	12602916	.	+	0	transcript_id "Ledus.S1G123700.t1"; gene_id "Ledus.S1G123700"
Ledus.S1	AUGUSTUS	CDS	12602914	12603177	0.72	+	0	transcript_id "Ledus.S1G123700.t1"; gene_id "Ledus.S1G123700"
Ledus.S1	AUGUSTUS	exon	12602914	12603177	.	+	.	transcript_id "Ledus.S1G123700.t1"; gene_id "Ledus.S1G123700"
Ledus.S1	AUGUSTUS	intron	12603178	12603270	.	+	.	transcript_id "Ledus.S1G123700.t1"; gene_id "Ledus.S1G123700"
Ledus.S1	AUGUSTUS	CDS	12603271	12603474	0.99	+	0	transcript_id "Ledus.S1G123700.t1"; gene_id "Ledus.S1G123700"
Ledus.S1	AUGUSTUS	exon	12603271	12603474	.	+	.	transcript_id "Ledus.S1G123700.t1"; gene_id "Ledus.S1G123700"
Ledus.S1	AUGUSTUS	stop_codon	12603475	12603477	.	+	0	transcript_id "Ledus.S1G123700.t1"; gene_id "Ledus.S1G123700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5616.t1 is derived from g3055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25409274	25410706	.	-	.	Ledus.S1G303700
Ledus.S1	AUGUSTUS	transcript	25409274	25410706	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	stop_codon	25409271	25409273	.	-	0	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	CDS	25409274	25409366	1	-	0	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	exon	25409274	25409366	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	intron	25409367	25409495	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	CDS	25409496	25409607	1	-	1	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	exon	25409496	25409607	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	intron	25409608	25409799	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	CDS	25409800	25409867	1	-	0	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	exon	25409800	25409867	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	intron	25409868	25410000	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	CDS	25410001	25410114	0.91	-	0	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	exon	25410001	25410114	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	intron	25410115	25410219	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	CDS	25410220	25410311	0.69	-	2	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	exon	25410220	25410311	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	intron	25410312	25410413	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	CDS	25410414	25410479	0.67	-	2	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	exon	25410414	25410479	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	intron	25410480	25410630	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	CDS	25410631	25410706	0.94	-	0	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	exon	25410631	25410706	.	-	.	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
Ledus.S1	AUGUSTUS	start_codon	25410704	25410706	.	-	0	transcript_id "Ledus.S1G303700.t1"; gene_id "Ledus.S1G303700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9226.t1 is derived from g10256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5507165	5509292	.	-	.	Ledus.S3G070300
Ledus.S3	AUGUSTUS	transcript	5507165	5509292	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	stop_codon	5507162	5507164	.	-	0	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	CDS	5507165	5507273	1	-	1	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	exon	5507165	5507273	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	intron	5507274	5507356	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	CDS	5507357	5507475	1	-	0	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	exon	5507357	5507475	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	intron	5507476	5507556	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	CDS	5507557	5507663	1	-	2	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	exon	5507557	5507663	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	intron	5507664	5507737	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	CDS	5507738	5507816	1	-	0	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	exon	5507738	5507816	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	intron	5507817	5507901	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	CDS	5507902	5507988	1	-	0	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	exon	5507902	5507988	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	intron	5507989	5508055	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	CDS	5508056	5508292	1	-	0	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	exon	5508056	5508292	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	intron	5508293	5508373	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	CDS	5508374	5508529	1	-	0	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	exon	5508374	5508529	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	intron	5508530	5508608	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	CDS	5508609	5508770	1	-	0	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	exon	5508609	5508770	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	intron	5508771	5508836	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	CDS	5508837	5508990	1	-	1	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	exon	5508837	5508990	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	intron	5508991	5509062	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	CDS	5509063	5509292	0.99	-	0	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	exon	5509063	5509292	.	-	.	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
Ledus.S3	AUGUSTUS	start_codon	5509290	5509292	.	-	0	transcript_id "Ledus.S3G070300.t1"; gene_id "Ledus.S3G070300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3535.t1 is derived from g971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9325759	9328411	.	+	.	Ledus.S1G095600
Ledus.S1	AUGUSTUS	transcript	9325759	9328411	.	+	.	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	start_codon	9325759	9325761	.	+	0	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	CDS	9325759	9325917	0.84	+	0	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	exon	9325759	9325917	.	+	.	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	intron	9325918	9326119	.	+	.	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	CDS	9326120	9326261	1	+	0	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	exon	9326120	9326261	.	+	.	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	intron	9326262	9326358	.	+	.	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	CDS	9326359	9326639	1	+	2	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	exon	9326359	9326639	.	+	.	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	intron	9326640	9326869	.	+	.	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	CDS	9326870	9328411	1	+	0	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	exon	9326870	9328411	.	+	.	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
Ledus.S1	AUGUSTUS	stop_codon	9328412	9328414	.	+	0	transcript_id "Ledus.S1G095600.t1"; gene_id "Ledus.S1G095600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6932.t1 is derived from g4376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35604052	35608476	.	-	.	Ledus.S1G435300
Ledus.S1	AUGUSTUS	transcript	35604052	35608476	.	-	.	transcript_id "Ledus.S1G435300.t1"; gene_id "Ledus.S1G435300"
Ledus.S1	AUGUSTUS	stop_codon	35604049	35604051	.	-	0	transcript_id "Ledus.S1G435300.t1"; gene_id "Ledus.S1G435300"
Ledus.S1	AUGUSTUS	CDS	35604052	35608036	0.44	-	1	transcript_id "Ledus.S1G435300.t1"; gene_id "Ledus.S1G435300"
Ledus.S1	AUGUSTUS	exon	35604052	35608036	.	-	.	transcript_id "Ledus.S1G435300.t1"; gene_id "Ledus.S1G435300"
Ledus.S1	AUGUSTUS	intron	35608037	35608165	.	-	.	transcript_id "Ledus.S1G435300.t1"; gene_id "Ledus.S1G435300"
Ledus.S1	AUGUSTUS	CDS	35608166	35608260	0.87	-	0	transcript_id "Ledus.S1G435300.t1"; gene_id "Ledus.S1G435300"
Ledus.S1	AUGUSTUS	exon	35608166	35608260	.	-	.	transcript_id "Ledus.S1G435300.t1"; gene_id "Ledus.S1G435300"
Ledus.S1	AUGUSTUS	intron	35608261	35608413	.	-	.	transcript_id "Ledus.S1G435300.t1"; gene_id "Ledus.S1G435300"
Ledus.S1	AUGUSTUS	CDS	35608414	35608476	0.43	-	0	transcript_id "Ledus.S1G435300.t1"; gene_id "Ledus.S1G435300"
Ledus.S1	AUGUSTUS	exon	35608414	35608476	.	-	.	transcript_id "Ledus.S1G435300.t1"; gene_id "Ledus.S1G435300"
Ledus.S1	AUGUSTUS	start_codon	35608474	35608476	.	-	0	transcript_id "Ledus.S1G435300.t1"; gene_id "Ledus.S1G435300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10234.t1 is derived from g11264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13719439	13720814	.	-	.	Ledus.S3G171100
Ledus.S3	AUGUSTUS	transcript	13719439	13720814	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	stop_codon	13719436	13719438	.	-	0	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	CDS	13719439	13719520	0.95	-	1	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	exon	13719439	13719520	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	intron	13719521	13719608	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	CDS	13719609	13719655	0.94	-	0	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	exon	13719609	13719655	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	intron	13719656	13719765	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	CDS	13719766	13719858	0.85	-	0	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	exon	13719766	13719858	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	intron	13719859	13719943	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	CDS	13719944	13719997	1	-	0	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	exon	13719944	13719997	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	intron	13719998	13720083	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	CDS	13720084	13720189	1	-	1	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	exon	13720084	13720189	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	intron	13720190	13720258	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	CDS	13720259	13720374	1	-	0	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	exon	13720259	13720374	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	intron	13720375	13720448	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	CDS	13720449	13720490	1	-	0	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	exon	13720449	13720490	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	intron	13720491	13720583	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	CDS	13720584	13720814	0.78	-	0	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	exon	13720584	13720814	.	-	.	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
Ledus.S3	AUGUSTUS	start_codon	13720812	13720814	.	-	0	transcript_id "Ledus.S3G171100.t1"; gene_id "Ledus.S3G171100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11366.t1 is derived from g4984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3832158	3833425	.	-	.	Ledus.S4G052200
Ledus.S4	AUGUSTUS	transcript	3832158	3833425	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	stop_codon	3832155	3832157	.	-	0	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	CDS	3832158	3832184	1	-	0	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	exon	3832158	3832184	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	intron	3832185	3832328	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	CDS	3832329	3832388	1	-	0	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	exon	3832329	3832388	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	intron	3832389	3832532	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	CDS	3832533	3832574	1	-	0	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	exon	3832533	3832574	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	intron	3832575	3832752	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	CDS	3832753	3832818	1	-	0	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	exon	3832753	3832818	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	intron	3832819	3832907	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	CDS	3832908	3832963	1	-	2	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	exon	3832908	3832963	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	intron	3832964	3833049	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	CDS	3833050	3833146	1	-	0	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	exon	3833050	3833146	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	intron	3833147	3833311	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	CDS	3833312	3833425	1	-	0	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	exon	3833312	3833425	.	-	.	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
Ledus.S4	AUGUSTUS	start_codon	3833423	3833425	.	-	0	transcript_id "Ledus.S4G052200.t1"; gene_id "Ledus.S4G052200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9352.t1 is derived from g10382.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6332454	6334275	.	-	.	Ledus.S3G082900
Ledus.S3	AUGUSTUS	transcript	6332454	6334275	.	-	.	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	stop_codon	6332451	6332453	.	-	0	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	CDS	6332454	6332482	1	-	2	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	exon	6332454	6332482	.	-	.	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	intron	6332483	6332690	.	-	.	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	CDS	6332691	6332838	1	-	0	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	exon	6332691	6332838	.	-	.	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	intron	6332839	6332970	.	-	.	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	CDS	6332971	6333057	1	-	0	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	exon	6332971	6333057	.	-	.	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	intron	6333058	6333332	.	-	.	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	CDS	6333333	6333467	1	-	0	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	exon	6333333	6333467	.	-	.	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	intron	6333468	6333889	.	-	.	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	CDS	6333890	6334065	0.64	-	2	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	exon	6333890	6334065	.	-	.	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	intron	6334066	6334202	.	-	.	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	CDS	6334203	6334275	0.6	-	0	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	exon	6334203	6334275	.	-	.	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
Ledus.S3	AUGUSTUS	start_codon	6334273	6334275	.	-	0	transcript_id "Ledus.S3G082900.t1"; gene_id "Ledus.S3G082900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg762.t1 is derived from g7623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4859754	4862238	.	+	.	Ledus.S2G064400
Ledus.S2	AUGUSTUS	transcript	4859754	4862238	.	+	.	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	start_codon	4859754	4859756	.	+	0	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	CDS	4859754	4859932	0.95	+	0	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	exon	4859754	4859932	.	+	.	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	intron	4859933	4860637	.	+	.	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	CDS	4860638	4860758	1	+	1	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	exon	4860638	4860758	.	+	.	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	intron	4860759	4861139	.	+	.	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	CDS	4861140	4861283	1	+	0	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	exon	4861140	4861283	.	+	.	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	intron	4861284	4861365	.	+	.	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	CDS	4861366	4861562	1	+	0	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	exon	4861366	4861562	.	+	.	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	intron	4861563	4861667	.	+	.	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	CDS	4861668	4861743	0.99	+	1	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	exon	4861668	4861743	.	+	.	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	intron	4861744	4861842	.	+	.	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	CDS	4861843	4862238	0.97	+	0	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	exon	4861843	4862238	.	+	.	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
Ledus.S2	AUGUSTUS	stop_codon	4862239	4862241	.	+	0	transcript_id "Ledus.S2G064400.t1"; gene_id "Ledus.S2G064400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9937.t1 is derived from g10967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11309701	11310530	.	+	.	Ledus.S3G141400
Ledus.S3	AUGUSTUS	transcript	11309701	11310530	.	+	.	transcript_id "Ledus.S3G141400.t1"; gene_id "Ledus.S3G141400"
Ledus.S3	AUGUSTUS	start_codon	11309701	11309703	.	+	0	transcript_id "Ledus.S3G141400.t1"; gene_id "Ledus.S3G141400"
Ledus.S3	AUGUSTUS	CDS	11309701	11309914	0.3	+	0	transcript_id "Ledus.S3G141400.t1"; gene_id "Ledus.S3G141400"
Ledus.S3	AUGUSTUS	exon	11309701	11309914	.	+	.	transcript_id "Ledus.S3G141400.t1"; gene_id "Ledus.S3G141400"
Ledus.S3	AUGUSTUS	intron	11309915	11310144	.	+	.	transcript_id "Ledus.S3G141400.t1"; gene_id "Ledus.S3G141400"
Ledus.S3	AUGUSTUS	CDS	11310145	11310530	0.63	+	2	transcript_id "Ledus.S3G141400.t1"; gene_id "Ledus.S3G141400"
Ledus.S3	AUGUSTUS	exon	11310145	11310530	.	+	.	transcript_id "Ledus.S3G141400.t1"; gene_id "Ledus.S3G141400"
Ledus.S3	AUGUSTUS	stop_codon	11310531	11310533	.	+	0	transcript_id "Ledus.S3G141400.t1"; gene_id "Ledus.S3G141400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5852.t1 is derived from g3294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27320999	27323097	.	+	.	Ledus.S1G327300
Ledus.S1	AUGUSTUS	transcript	27320999	27323097	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	start_codon	27320999	27321001	.	+	0	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	CDS	27320999	27321133	0.29	+	0	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	exon	27320999	27321133	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	intron	27321134	27321217	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	CDS	27321218	27321475	1	+	0	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	exon	27321218	27321475	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	intron	27321476	27321568	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	CDS	27321569	27321778	1	+	0	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	exon	27321569	27321778	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	intron	27321779	27321929	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	CDS	27321930	27322058	1	+	0	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	exon	27321930	27322058	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	intron	27322059	27322180	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	CDS	27322181	27322422	1	+	0	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	exon	27322181	27322422	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	intron	27322423	27322504	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	CDS	27322505	27322718	1	+	1	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	exon	27322505	27322718	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	intron	27322719	27322818	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	CDS	27322819	27323097	0.71	+	0	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	exon	27322819	27323097	.	+	.	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
Ledus.S1	AUGUSTUS	stop_codon	27323098	27323100	.	+	0	transcript_id "Ledus.S1G327300.t1"; gene_id "Ledus.S1G327300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg133.t1 is derived from g6994.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	181924	182205	.	-	.	Ledus.S2G001500
Ledus.S2	AUGUSTUS	transcript	181924	182205	.	-	.	transcript_id "Ledus.S2G001500.t1"; gene_id "Ledus.S2G001500"
Ledus.S2	AUGUSTUS	stop_codon	181921	181923	.	-	0	transcript_id "Ledus.S2G001500.t1"; gene_id "Ledus.S2G001500"
Ledus.S2	AUGUSTUS	CDS	181924	182205	1	-	0	transcript_id "Ledus.S2G001500.t1"; gene_id "Ledus.S2G001500"
Ledus.S2	AUGUSTUS	exon	181924	182205	.	-	.	transcript_id "Ledus.S2G001500.t1"; gene_id "Ledus.S2G001500"
Ledus.S2	AUGUSTUS	start_codon	182203	182205	.	-	0	transcript_id "Ledus.S2G001500.t1"; gene_id "Ledus.S2G001500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3150.t1 is derived from g585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6350074	6351722	.	+	.	Ledus.S1G057100
Ledus.S1	AUGUSTUS	transcript	6350074	6351722	.	+	.	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	start_codon	6350074	6350076	.	+	0	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	CDS	6350074	6350289	0.83	+	0	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	exon	6350074	6350289	.	+	.	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	intron	6350290	6350414	.	+	.	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	CDS	6350415	6350576	1	+	0	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	exon	6350415	6350576	.	+	.	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	intron	6350577	6350689	.	+	.	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	CDS	6350690	6350869	1	+	0	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	exon	6350690	6350869	.	+	.	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	intron	6350870	6350944	.	+	.	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	CDS	6350945	6351179	1	+	0	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	exon	6350945	6351179	.	+	.	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	intron	6351180	6351304	.	+	.	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	CDS	6351305	6351527	0.97	+	2	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	exon	6351305	6351527	.	+	.	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	intron	6351528	6351616	.	+	.	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	CDS	6351617	6351722	0.99	+	1	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	exon	6351617	6351722	.	+	.	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
Ledus.S1	AUGUSTUS	stop_codon	6351723	6351725	.	+	0	transcript_id "Ledus.S1G057100.t1"; gene_id "Ledus.S1G057100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11324.t1 is derived from g4942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3588292	3589874	.	+	.	Ledus.S4G048000
Ledus.S4	AUGUSTUS	transcript	3588292	3589874	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	start_codon	3588292	3588294	.	+	0	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	CDS	3588292	3588570	0.55	+	0	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	exon	3588292	3588570	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	intron	3588571	3588684	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	CDS	3588685	3588738	1	+	0	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	exon	3588685	3588738	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	intron	3588739	3588799	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	CDS	3588800	3588883	0.89	+	0	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	exon	3588800	3588883	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	intron	3588884	3588992	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	CDS	3588993	3589118	0.96	+	0	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	exon	3588993	3589118	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	intron	3589119	3589217	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	CDS	3589218	3589285	1	+	0	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	exon	3589218	3589285	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	intron	3589286	3589365	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	CDS	3589366	3589435	1	+	1	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	exon	3589366	3589435	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	intron	3589436	3589516	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	CDS	3589517	3589582	1	+	0	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	exon	3589517	3589582	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	intron	3589583	3589662	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	CDS	3589663	3589740	1	+	0	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	exon	3589663	3589740	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	intron	3589741	3589835	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	CDS	3589836	3589874	1	+	0	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	exon	3589836	3589874	.	+	.	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
Ledus.S4	AUGUSTUS	stop_codon	3589875	3589877	.	+	0	transcript_id "Ledus.S4G048000.t1"; gene_id "Ledus.S4G048000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12216.t1 is derived from g5835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10421299	10422871	.	-	.	Ledus.S4G137200
Ledus.S4	AUGUSTUS	transcript	10421299	10422871	.	-	.	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	stop_codon	10421296	10421298	.	-	0	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	CDS	10421299	10421412	0.97	-	0	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	exon	10421299	10421412	.	-	.	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	intron	10421413	10421511	.	-	.	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	CDS	10421512	10421645	0.96	-	2	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	exon	10421512	10421645	.	-	.	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	intron	10421646	10421771	.	-	.	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	CDS	10421772	10422102	0.97	-	0	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	exon	10421772	10422102	.	-	.	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	intron	10422103	10422172	.	-	.	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	CDS	10422173	10422871	0.83	-	0	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	exon	10422173	10422871	.	-	.	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
Ledus.S4	AUGUSTUS	start_codon	10422869	10422871	.	-	0	transcript_id "Ledus.S4G137200.t1"; gene_id "Ledus.S4G137200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12955.t1 is derived from g6765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1029466	1031616	.	-	.	Ledus.S6G001700
Ledus.S6	AUGUSTUS	transcript	1029466	1031616	.	-	.	transcript_id "Ledus.S6G001700.t1"; gene_id "Ledus.S6G001700"
Ledus.S6	AUGUSTUS	stop_codon	1029463	1029465	.	-	0	transcript_id "Ledus.S6G001700.t1"; gene_id "Ledus.S6G001700"
Ledus.S6	AUGUSTUS	CDS	1029466	1031616	0.49	-	0	transcript_id "Ledus.S6G001700.t1"; gene_id "Ledus.S6G001700"
Ledus.S6	AUGUSTUS	exon	1029466	1031616	.	-	.	transcript_id "Ledus.S6G001700.t1"; gene_id "Ledus.S6G001700"
Ledus.S6	AUGUSTUS	start_codon	1031614	1031616	.	-	0	transcript_id "Ledus.S6G001700.t1"; gene_id "Ledus.S6G001700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2262.t1 is derived from g9125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16659236	16660417	.	+	.	Ledus.S2G214400
Ledus.S2	AUGUSTUS	transcript	16659236	16660417	.	+	.	transcript_id "Ledus.S2G214400.t1"; gene_id "Ledus.S2G214400"
Ledus.S2	AUGUSTUS	start_codon	16659236	16659238	.	+	0	transcript_id "Ledus.S2G214400.t1"; gene_id "Ledus.S2G214400"
Ledus.S2	AUGUSTUS	CDS	16659236	16660417	0.71	+	0	transcript_id "Ledus.S2G214400.t1"; gene_id "Ledus.S2G214400"
Ledus.S2	AUGUSTUS	exon	16659236	16660417	.	+	.	transcript_id "Ledus.S2G214400.t1"; gene_id "Ledus.S2G214400"
Ledus.S2	AUGUSTUS	stop_codon	16660418	16660420	.	+	0	transcript_id "Ledus.S2G214400.t1"; gene_id "Ledus.S2G214400"
# This transcript jg3294.t2 is derived from g729.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3295.t1 is derived from g730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7353669	7358140	.	-	.	Ledus.S1G071600
Ledus.S1	AUGUSTUS	transcript	7353669	7358140	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	stop_codon	7353666	7353668	.	-	0	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7353669	7354175	0.99	-	0	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7353669	7354175	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	intron	7354176	7354384	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7354385	7354654	1	-	0	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7354385	7354654	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	intron	7354655	7354939	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7354940	7355199	0.98	-	2	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7354940	7355199	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	intron	7355200	7355291	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7355292	7355418	1	-	0	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7355292	7355418	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	intron	7355419	7355506	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7355507	7355610	1	-	2	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7355507	7355610	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	intron	7355611	7355747	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7355748	7355814	1	-	0	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7355748	7355814	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	intron	7355815	7355941	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7355942	7356004	0.98	-	0	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7355942	7356004	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	intron	7356005	7356124	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7356125	7356215	0.98	-	1	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7356125	7356215	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	intron	7356216	7356411	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7356412	7356588	1	-	1	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7356412	7356588	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	intron	7356589	7356794	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7356795	7356884	1	-	1	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7356795	7356884	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	intron	7356885	7357061	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7357062	7357133	1	-	1	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7357062	7357133	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	intron	7357134	7357261	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7357262	7357542	1	-	0	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7357262	7357542	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	intron	7357543	7357768	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	CDS	7357769	7358140	0.89	-	0	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	exon	7357769	7358140	.	-	.	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
Ledus.S1	AUGUSTUS	start_codon	7358138	7358140	.	-	0	transcript_id "Ledus.S1G071600.t1"; gene_id "Ledus.S1G071600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1304.t1 is derived from g8165.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9193891	9194408	.	-	.	Ledus.S2G118600
Ledus.S2	AUGUSTUS	transcript	9193891	9194408	.	-	.	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	stop_codon	9193888	9193890	.	-	0	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	CDS	9193891	9193947	1	-	0	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	exon	9193891	9193947	.	-	.	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	intron	9193948	9194047	.	-	.	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	CDS	9194048	9194110	1	-	0	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	exon	9194048	9194110	.	-	.	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	intron	9194111	9194195	.	-	.	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	CDS	9194196	9194264	1	-	0	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	exon	9194196	9194264	.	-	.	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	intron	9194265	9194336	.	-	.	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	CDS	9194337	9194408	0.96	-	0	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	exon	9194337	9194408	.	-	.	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	start_codon	9194406	9194408	.	-	0	transcript_id "Ledus.S2G118600.t1"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	transcript	9193891	9194408	.	-	.	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	stop_codon	9193888	9193890	.	-	0	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	CDS	9193891	9193947	1	-	0	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	exon	9193891	9193947	.	-	.	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	intron	9193948	9194047	.	-	.	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	CDS	9194048	9194110	1	-	0	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	exon	9194048	9194110	.	-	.	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	intron	9194111	9194198	.	-	.	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	CDS	9194199	9194264	0.63	-	0	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	exon	9194199	9194264	.	-	.	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	intron	9194265	9194336	.	-	.	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	CDS	9194337	9194408	0.88	-	0	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	exon	9194337	9194408	.	-	.	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
Ledus.S2	AUGUSTUS	start_codon	9194406	9194408	.	-	0	transcript_id "Ledus.S2G118600.t2"; gene_id "Ledus.S2G118600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4734.t1 is derived from g2172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19408475	19408912	.	+	.	Ledus.S1G215500
Ledus.S1	AUGUSTUS	transcript	19408475	19408912	.	+	.	transcript_id "Ledus.S1G215500.t1"; gene_id "Ledus.S1G215500"
Ledus.S1	AUGUSTUS	start_codon	19408475	19408477	.	+	0	transcript_id "Ledus.S1G215500.t1"; gene_id "Ledus.S1G215500"
Ledus.S1	AUGUSTUS	CDS	19408475	19408912	0.74	+	0	transcript_id "Ledus.S1G215500.t1"; gene_id "Ledus.S1G215500"
Ledus.S1	AUGUSTUS	exon	19408475	19408912	.	+	.	transcript_id "Ledus.S1G215500.t1"; gene_id "Ledus.S1G215500"
Ledus.S1	AUGUSTUS	stop_codon	19408913	19408915	.	+	0	transcript_id "Ledus.S1G215500.t1"; gene_id "Ledus.S1G215500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1070.t1 is derived from g7931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7222469	7223671	.	+	.	Ledus.S2G095200
Ledus.S2	AUGUSTUS	transcript	7222469	7223671	.	+	.	transcript_id "Ledus.S2G095200.t1"; gene_id "Ledus.S2G095200"
Ledus.S2	AUGUSTUS	start_codon	7222469	7222471	.	+	0	transcript_id "Ledus.S2G095200.t1"; gene_id "Ledus.S2G095200"
Ledus.S2	AUGUSTUS	CDS	7222469	7222553	0.38	+	0	transcript_id "Ledus.S2G095200.t1"; gene_id "Ledus.S2G095200"
Ledus.S2	AUGUSTUS	exon	7222469	7222553	.	+	.	transcript_id "Ledus.S2G095200.t1"; gene_id "Ledus.S2G095200"
Ledus.S2	AUGUSTUS	intron	7222554	7223049	.	+	.	transcript_id "Ledus.S2G095200.t1"; gene_id "Ledus.S2G095200"
Ledus.S2	AUGUSTUS	CDS	7223050	7223283	1	+	2	transcript_id "Ledus.S2G095200.t1"; gene_id "Ledus.S2G095200"
Ledus.S2	AUGUSTUS	exon	7223050	7223283	.	+	.	transcript_id "Ledus.S2G095200.t1"; gene_id "Ledus.S2G095200"
Ledus.S2	AUGUSTUS	intron	7223284	7223579	.	+	.	transcript_id "Ledus.S2G095200.t1"; gene_id "Ledus.S2G095200"
Ledus.S2	AUGUSTUS	CDS	7223580	7223671	0.9	+	2	transcript_id "Ledus.S2G095200.t1"; gene_id "Ledus.S2G095200"
Ledus.S2	AUGUSTUS	exon	7223580	7223671	.	+	.	transcript_id "Ledus.S2G095200.t1"; gene_id "Ledus.S2G095200"
Ledus.S2	AUGUSTUS	stop_codon	7223672	7223674	.	+	0	transcript_id "Ledus.S2G095200.t1"; gene_id "Ledus.S2G095200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5246.t1 is derived from g2685.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22659252	22662033	.	-	.	Ledus.S1G266700
Ledus.S1	AUGUSTUS	transcript	22659252	22662033	.	-	.	transcript_id "Ledus.S1G266700.t1"; gene_id "Ledus.S1G266700"
Ledus.S1	AUGUSTUS	stop_codon	22659249	22659251	.	-	0	transcript_id "Ledus.S1G266700.t1"; gene_id "Ledus.S1G266700"
Ledus.S1	AUGUSTUS	CDS	22659252	22659338	0.73	-	0	transcript_id "Ledus.S1G266700.t1"; gene_id "Ledus.S1G266700"
Ledus.S1	AUGUSTUS	exon	22659252	22659338	.	-	.	transcript_id "Ledus.S1G266700.t1"; gene_id "Ledus.S1G266700"
Ledus.S1	AUGUSTUS	intron	22659339	22659427	.	-	.	transcript_id "Ledus.S1G266700.t1"; gene_id "Ledus.S1G266700"
Ledus.S1	AUGUSTUS	CDS	22659428	22659530	0.64	-	1	transcript_id "Ledus.S1G266700.t1"; gene_id "Ledus.S1G266700"
Ledus.S1	AUGUSTUS	exon	22659428	22659530	.	-	.	transcript_id "Ledus.S1G266700.t1"; gene_id "Ledus.S1G266700"
Ledus.S1	AUGUSTUS	intron	22659531	22659628	.	-	.	transcript_id "Ledus.S1G266700.t1"; gene_id "Ledus.S1G266700"
Ledus.S1	AUGUSTUS	CDS	22659629	22662033	0.67	-	0	transcript_id "Ledus.S1G266700.t1"; gene_id "Ledus.S1G266700"
Ledus.S1	AUGUSTUS	exon	22659629	22662033	.	-	.	transcript_id "Ledus.S1G266700.t1"; gene_id "Ledus.S1G266700"
Ledus.S1	AUGUSTUS	start_codon	22662031	22662033	.	-	0	transcript_id "Ledus.S1G266700.t1"; gene_id "Ledus.S1G266700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6352.t1 is derived from g3795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30699364	30701914	.	+	.	Ledus.S1G377300
Ledus.S1	AUGUSTUS	transcript	30699364	30701914	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	start_codon	30699364	30699366	.	+	0	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	CDS	30699364	30699575	0.3	+	0	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	exon	30699364	30699575	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	intron	30699576	30699690	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	CDS	30699691	30699832	0.58	+	1	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	exon	30699691	30699832	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	intron	30699833	30699938	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	CDS	30699939	30700066	0.79	+	0	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	exon	30699939	30700066	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	intron	30700067	30700156	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	CDS	30700157	30700226	1	+	1	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	exon	30700157	30700226	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	intron	30700227	30700434	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	CDS	30700435	30700537	1	+	0	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	exon	30700435	30700537	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	intron	30700538	30700612	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	CDS	30700613	30700730	1	+	2	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	exon	30700613	30700730	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	intron	30700731	30700855	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	CDS	30700856	30700937	1	+	1	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	exon	30700856	30700937	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	intron	30700938	30701037	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	CDS	30701038	30701099	1	+	0	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	exon	30701038	30701099	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	intron	30701100	30701189	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	CDS	30701190	30701262	1	+	1	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	exon	30701190	30701262	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	intron	30701263	30701357	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	CDS	30701358	30701441	1	+	0	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	exon	30701358	30701441	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	intron	30701442	30701529	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	CDS	30701530	30701610	1	+	0	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	exon	30701530	30701610	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	intron	30701611	30701710	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	CDS	30701711	30701914	0.98	+	0	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	exon	30701711	30701914	.	+	.	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
Ledus.S1	AUGUSTUS	stop_codon	30701915	30701917	.	+	0	transcript_id "Ledus.S1G377300.t1"; gene_id "Ledus.S1G377300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7722.t1 is derived from g12393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5576736	5579623	.	+	.	Ledus.S5G050000
Ledus.S5	AUGUSTUS	transcript	5576736	5579623	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	start_codon	5576736	5576738	.	+	0	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	CDS	5576736	5576777	0.99	+	0	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	exon	5576736	5576777	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	intron	5576778	5576920	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	CDS	5576921	5576995	1	+	0	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	exon	5576921	5576995	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	intron	5576996	5577169	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	CDS	5577170	5577236	0.98	+	0	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	exon	5577170	5577236	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	intron	5577237	5577356	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	CDS	5577357	5577531	0.95	+	2	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	exon	5577357	5577531	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	intron	5577532	5577639	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	CDS	5577640	5577772	1	+	1	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	exon	5577640	5577772	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	intron	5577773	5577894	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	CDS	5577895	5577978	1	+	0	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	exon	5577895	5577978	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	intron	5577979	5578070	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	CDS	5578071	5578190	1	+	0	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	exon	5578071	5578190	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	intron	5578191	5578425	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	CDS	5578426	5578638	1	+	0	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	exon	5578426	5578638	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	intron	5578639	5578762	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	CDS	5578763	5578825	1	+	0	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	exon	5578763	5578825	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	intron	5578826	5578957	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	CDS	5578958	5579082	1	+	0	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	exon	5578958	5579082	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	intron	5579083	5579190	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	CDS	5579191	5579246	1	+	1	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	exon	5579191	5579246	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	intron	5579247	5579336	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	CDS	5579337	5579623	0.9	+	2	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	exon	5579337	5579623	.	+	.	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
Ledus.S5	AUGUSTUS	stop_codon	5579624	5579626	.	+	0	transcript_id "Ledus.S5G050000.t1"; gene_id "Ledus.S5G050000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6535.t1 is derived from g3978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32161245	32165857	.	-	.	Ledus.S1G395600
Ledus.S1	AUGUSTUS	transcript	32161245	32165857	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	stop_codon	32161242	32161244	.	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32161245	32161337	1	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32161245	32161337	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32161338	32161408	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32161409	32161573	1	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32161409	32161573	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32161574	32161669	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32161670	32162002	1	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32161670	32162002	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32162003	32162138	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32162139	32162196	1	-	1	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32162139	32162196	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32162197	32162303	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32162304	32162398	1	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32162304	32162398	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32162399	32162471	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32162472	32162534	1	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32162472	32162534	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32162535	32162625	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32162626	32162686	1	-	1	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32162626	32162686	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32162687	32162779	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32162780	32162937	1	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32162780	32162937	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32162938	32163091	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32163092	32163174	1	-	2	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32163092	32163174	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32163175	32163252	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32163253	32163301	1	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32163253	32163301	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32163302	32163431	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32163432	32163495	1	-	1	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32163432	32163495	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32163496	32163685	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32163686	32163778	1	-	1	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32163686	32163778	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32163779	32163888	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32163889	32164022	0.8	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32163889	32164022	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32164023	32164109	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32164110	32164331	1	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32164110	32164331	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32164332	32164434	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32164435	32164557	0.95	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32164435	32164557	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32164558	32164684	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32164685	32164849	1	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32164685	32164849	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	intron	32164850	32164951	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	CDS	32164952	32165857	0.62	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	exon	32164952	32165857	.	-	.	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
Ledus.S1	AUGUSTUS	start_codon	32165855	32165857	.	-	0	transcript_id "Ledus.S1G395600.t1"; gene_id "Ledus.S1G395600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5979.t1 is derived from g3422.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28139287	28142331	.	-	.	Ledus.S1G340000
Ledus.S1	AUGUSTUS	transcript	28139287	28142331	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	stop_codon	28139284	28139286	.	-	0	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28139287	28139388	0.99	-	0	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28139287	28139388	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28139389	28139710	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28139711	28139803	1	-	0	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28139711	28139803	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28139804	28139925	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28139926	28139976	1	-	0	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28139926	28139976	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28139977	28140258	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28140259	28140398	1	-	2	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28140259	28140398	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28140399	28140651	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28140652	28140703	0.9	-	0	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28140652	28140703	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28140704	28140807	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28140808	28140924	0.89	-	0	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28140808	28140924	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28140925	28141037	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28141038	28141151	1	-	0	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28141038	28141151	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28141152	28141262	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28141263	28141308	0.93	-	1	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28141263	28141308	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28141309	28141501	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28141502	28141554	1	-	0	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28141502	28141554	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28141555	28141682	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28141683	28141722	1	-	1	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28141683	28141722	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28141723	28141954	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28141955	28142331	0.93	-	0	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28141955	28142331	.	-	.	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	start_codon	28142329	28142331	.	-	0	transcript_id "Ledus.S1G340000.t1"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	transcript	28139287	28142331	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	stop_codon	28139284	28139286	.	-	0	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28139287	28139388	1	-	0	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28139287	28139388	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28139389	28139710	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28139711	28139803	1	-	0	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28139711	28139803	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28139804	28139925	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28139926	28139976	1	-	0	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28139926	28139976	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28139977	28140258	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28140259	28140539	0.99	-	2	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28140259	28140539	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28140540	28140651	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28140652	28140703	0.89	-	0	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28140652	28140703	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28140704	28140807	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28140808	28140924	0.89	-	0	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28140808	28140924	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28140925	28141037	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28141038	28141151	0.94	-	0	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28141038	28141151	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28141152	28141262	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28141263	28141308	0.92	-	1	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28141263	28141308	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28141309	28141501	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28141502	28141554	1	-	0	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28141502	28141554	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28141555	28141682	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28141683	28141722	1	-	1	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28141683	28141722	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	intron	28141723	28141954	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	CDS	28141955	28142331	0.97	-	0	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	exon	28141955	28142331	.	-	.	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
Ledus.S1	AUGUSTUS	start_codon	28142329	28142331	.	-	0	transcript_id "Ledus.S1G340000.t2"; gene_id "Ledus.S1G340000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5146.t1 is derived from g2585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21943997	21944617	.	-	.	Ledus.S1G256700
Ledus.S1	AUGUSTUS	transcript	21943997	21944617	.	-	.	transcript_id "Ledus.S1G256700.t1"; gene_id "Ledus.S1G256700"
Ledus.S1	AUGUSTUS	stop_codon	21943994	21943996	.	-	0	transcript_id "Ledus.S1G256700.t1"; gene_id "Ledus.S1G256700"
Ledus.S1	AUGUSTUS	CDS	21943997	21944617	0.97	-	0	transcript_id "Ledus.S1G256700.t1"; gene_id "Ledus.S1G256700"
Ledus.S1	AUGUSTUS	exon	21943997	21944617	.	-	.	transcript_id "Ledus.S1G256700.t1"; gene_id "Ledus.S1G256700"
Ledus.S1	AUGUSTUS	start_codon	21944615	21944617	.	-	0	transcript_id "Ledus.S1G256700.t1"; gene_id "Ledus.S1G256700"
# This transcript jg4408.t2 is derived from g1844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4409.t1 is derived from g1845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16939475	16940950	.	+	.	Ledus.S1G183000
Ledus.S1	AUGUSTUS	transcript	16939475	16940950	.	+	.	transcript_id "Ledus.S1G183000.t1"; gene_id "Ledus.S1G183000"
Ledus.S1	AUGUSTUS	start_codon	16939475	16939477	.	+	0	transcript_id "Ledus.S1G183000.t1"; gene_id "Ledus.S1G183000"
Ledus.S1	AUGUSTUS	CDS	16939475	16940950	0.85	+	0	transcript_id "Ledus.S1G183000.t1"; gene_id "Ledus.S1G183000"
Ledus.S1	AUGUSTUS	exon	16939475	16940950	.	+	.	transcript_id "Ledus.S1G183000.t1"; gene_id "Ledus.S1G183000"
Ledus.S1	AUGUSTUS	stop_codon	16940951	16940953	.	+	0	transcript_id "Ledus.S1G183000.t1"; gene_id "Ledus.S1G183000"
Ledus.S1	AUGUSTUS	transcript	16939550	16940950	.	+	.	transcript_id "Ledus.S1G183000.t2"; gene_id "Ledus.S1G183000"
Ledus.S1	AUGUSTUS	start_codon	16939550	16939552	.	+	0	transcript_id "Ledus.S1G183000.t2"; gene_id "Ledus.S1G183000"
Ledus.S1	AUGUSTUS	CDS	16939550	16940950	0.31	+	0	transcript_id "Ledus.S1G183000.t2"; gene_id "Ledus.S1G183000"
Ledus.S1	AUGUSTUS	exon	16939550	16940950	.	+	.	transcript_id "Ledus.S1G183000.t2"; gene_id "Ledus.S1G183000"
Ledus.S1	AUGUSTUS	stop_codon	16940951	16940953	.	+	0	transcript_id "Ledus.S1G183000.t2"; gene_id "Ledus.S1G183000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5167.t1 is derived from g2606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22066179	22066448	.	+	.	Ledus.S1G258800
Ledus.S1	AUGUSTUS	transcript	22066179	22066448	.	+	.	transcript_id "Ledus.S1G258800.t1"; gene_id "Ledus.S1G258800"
Ledus.S1	AUGUSTUS	start_codon	22066179	22066181	.	+	0	transcript_id "Ledus.S1G258800.t1"; gene_id "Ledus.S1G258800"
Ledus.S1	AUGUSTUS	CDS	22066179	22066448	0.86	+	0	transcript_id "Ledus.S1G258800.t1"; gene_id "Ledus.S1G258800"
Ledus.S1	AUGUSTUS	exon	22066179	22066448	.	+	.	transcript_id "Ledus.S1G258800.t1"; gene_id "Ledus.S1G258800"
Ledus.S1	AUGUSTUS	stop_codon	22066449	22066451	.	+	0	transcript_id "Ledus.S1G258800.t1"; gene_id "Ledus.S1G258800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg65.t1 is derived from g9478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	190538	193365	.	-	.	Ledus.C8G002500
Ledus.C8	AUGUSTUS	transcript	190538	193365	.	-	.	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	stop_codon	190535	190537	.	-	0	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	CDS	190538	190901	0.99	-	1	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	exon	190538	190901	.	-	.	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	intron	190902	190976	.	-	.	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	CDS	190977	191775	1	-	2	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	exon	190977	191775	.	-	.	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	intron	191776	191852	.	-	.	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	CDS	191853	192186	1	-	0	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	exon	191853	192186	.	-	.	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	intron	192187	192942	.	-	.	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	CDS	192943	193365	0.69	-	0	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	exon	192943	193365	.	-	.	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
Ledus.C8	AUGUSTUS	start_codon	193363	193365	.	-	0	transcript_id "Ledus.C8G002500.t1"; gene_id "Ledus.C8G002500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9014.t1 is derived from g10044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3876377	3877466	.	+	.	Ledus.S3G049100
Ledus.S3	AUGUSTUS	transcript	3876377	3877466	.	+	.	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	start_codon	3876377	3876379	.	+	0	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	CDS	3876377	3876395	1	+	0	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	exon	3876377	3876395	.	+	.	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	intron	3876396	3876493	.	+	.	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	CDS	3876494	3876585	1	+	2	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	exon	3876494	3876585	.	+	.	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	intron	3876586	3876671	.	+	.	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	CDS	3876672	3876783	1	+	0	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	exon	3876672	3876783	.	+	.	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	intron	3876784	3876864	.	+	.	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	CDS	3876865	3876935	1	+	2	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	exon	3876865	3876935	.	+	.	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	intron	3876936	3877039	.	+	.	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	CDS	3877040	3877117	1	+	0	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	exon	3877040	3877117	.	+	.	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	intron	3877118	3877199	.	+	.	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	CDS	3877200	3877466	1	+	0	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	exon	3877200	3877466	.	+	.	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
Ledus.S3	AUGUSTUS	stop_codon	3877467	3877469	.	+	0	transcript_id "Ledus.S3G049100.t1"; gene_id "Ledus.S3G049100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2071.t1 is derived from g8934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14484376	14485292	.	-	.	Ledus.S2G195300
Ledus.S2	AUGUSTUS	transcript	14484376	14485292	.	-	.	transcript_id "Ledus.S2G195300.t1"; gene_id "Ledus.S2G195300"
Ledus.S2	AUGUSTUS	stop_codon	14484373	14484375	.	-	0	transcript_id "Ledus.S2G195300.t1"; gene_id "Ledus.S2G195300"
Ledus.S2	AUGUSTUS	CDS	14484376	14484410	0.99	-	2	transcript_id "Ledus.S2G195300.t1"; gene_id "Ledus.S2G195300"
Ledus.S2	AUGUSTUS	exon	14484376	14484410	.	-	.	transcript_id "Ledus.S2G195300.t1"; gene_id "Ledus.S2G195300"
Ledus.S2	AUGUSTUS	intron	14484411	14484655	.	-	.	transcript_id "Ledus.S2G195300.t1"; gene_id "Ledus.S2G195300"
Ledus.S2	AUGUSTUS	CDS	14484656	14485292	0.81	-	0	transcript_id "Ledus.S2G195300.t1"; gene_id "Ledus.S2G195300"
Ledus.S2	AUGUSTUS	exon	14484656	14485292	.	-	.	transcript_id "Ledus.S2G195300.t1"; gene_id "Ledus.S2G195300"
Ledus.S2	AUGUSTUS	start_codon	14485290	14485292	.	-	0	transcript_id "Ledus.S2G195300.t1"; gene_id "Ledus.S2G195300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2969.t1 is derived from g404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5002959	5006676	.	-	.	Ledus.S1G039000
Ledus.S1	AUGUSTUS	transcript	5002959	5006676	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	stop_codon	5002956	5002958	.	-	0	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	CDS	5002959	5003126	1	-	0	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	exon	5002959	5003126	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	intron	5003127	5003349	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	CDS	5003350	5003548	1	-	1	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	exon	5003350	5003548	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	intron	5003549	5003782	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	CDS	5003783	5003823	0.69	-	0	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	exon	5003783	5003823	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	intron	5003824	5004008	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	CDS	5004009	5004107	1	-	0	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	exon	5004009	5004107	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	intron	5004108	5004262	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	CDS	5004263	5004370	1	-	0	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	exon	5004263	5004370	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	intron	5004371	5004513	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	CDS	5004514	5004624	1	-	0	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	exon	5004514	5004624	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	intron	5004625	5004750	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	CDS	5004751	5004870	0.93	-	0	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	exon	5004751	5004870	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	intron	5004871	5005267	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	CDS	5005268	5005360	1	-	0	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	exon	5005268	5005360	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	intron	5005361	5005538	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	CDS	5005539	5005685	1	-	0	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	exon	5005539	5005685	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	intron	5005686	5005795	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	CDS	5005796	5006020	1	-	0	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	exon	5005796	5006020	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	intron	5006021	5006297	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	CDS	5006298	5006526	1	-	1	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	exon	5006298	5006526	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	intron	5006527	5006626	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	CDS	5006627	5006676	0.65	-	0	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	exon	5006627	5006676	.	-	.	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
Ledus.S1	AUGUSTUS	start_codon	5006674	5006676	.	-	0	transcript_id "Ledus.S1G039000.t1"; gene_id "Ledus.S1G039000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6114.t1 is derived from g3557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28963104	28968502	.	+	.	Ledus.S1G353500
Ledus.S1	AUGUSTUS	transcript	28963104	28968502	.	+	.	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	start_codon	28963104	28963106	.	+	0	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	CDS	28963104	28966325	0.84	+	0	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	exon	28963104	28966325	.	+	.	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	intron	28966326	28966438	.	+	.	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	CDS	28966439	28966552	1	+	0	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	exon	28966439	28966552	.	+	.	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	intron	28966553	28966650	.	+	.	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	CDS	28966651	28966800	1	+	0	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	exon	28966651	28966800	.	+	.	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	intron	28966801	28966888	.	+	.	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	CDS	28966889	28966972	0.81	+	0	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	exon	28966889	28966972	.	+	.	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	intron	28966973	28967269	.	+	.	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	CDS	28967270	28968502	0.47	+	0	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	exon	28967270	28968502	.	+	.	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
Ledus.S1	AUGUSTUS	stop_codon	28968503	28968505	.	+	0	transcript_id "Ledus.S1G353500.t1"; gene_id "Ledus.S1G353500"
# This transcript jg8274.t2 is derived from g12945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8275.t1 is derived from g12946.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10355388	10358734	.	-	.	Ledus.S5G105300
Ledus.S5	AUGUSTUS	transcript	10355388	10358734	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	stop_codon	10355385	10355387	.	-	0	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10355388	10355498	1	-	0	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10355388	10355498	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10355499	10355602	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10355603	10355884	0.97	-	0	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10355603	10355884	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10355885	10356151	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10356152	10356325	1	-	0	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10356152	10356325	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10356326	10356437	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10356438	10356521	1	-	0	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10356438	10356521	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10356522	10356747	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10356748	10356837	1	-	0	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10356748	10356837	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10356838	10357106	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10357107	10357292	1	-	0	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10357107	10357292	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10357293	10357570	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10357571	10357702	1	-	0	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10357571	10357702	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10357703	10357819	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10357820	10358002	1	-	0	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10357820	10358002	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10358003	10358113	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10358114	10358298	1	-	2	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10358114	10358298	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10358299	10358535	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10358536	10358734	1	-	0	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10358536	10358734	.	-	.	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	start_codon	10358732	10358734	.	-	0	transcript_id "Ledus.S5G105300.t1"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	transcript	10355388	10358734	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	stop_codon	10355385	10355387	.	-	0	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10355388	10355498	0.99	-	0	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10355388	10355498	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10355499	10355602	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10355603	10355727	0.97	-	2	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10355603	10355727	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10355728	10356151	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10356152	10356218	0.56	-	0	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10356152	10356218	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10356219	10356437	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10356438	10356521	0.56	-	0	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10356438	10356521	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10356522	10356747	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10356748	10356837	1	-	0	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10356748	10356837	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10356838	10357106	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10357107	10357292	1	-	0	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10357107	10357292	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10357293	10357570	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10357571	10357702	1	-	0	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10357571	10357702	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10357703	10357819	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10357820	10358002	1	-	0	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10357820	10358002	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10358003	10358113	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10358114	10358298	1	-	2	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10358114	10358298	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	intron	10358299	10358535	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	CDS	10358536	10358734	0.95	-	0	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	exon	10358536	10358734	.	-	.	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
Ledus.S5	AUGUSTUS	start_codon	10358732	10358734	.	-	0	transcript_id "Ledus.S5G105300.t2"; gene_id "Ledus.S5G105300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7361.t1 is derived from g12032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1452191	1452973	.	+	.	Ledus.S5G013900
Ledus.S5	AUGUSTUS	transcript	1452191	1452973	.	+	.	transcript_id "Ledus.S5G013900.t1"; gene_id "Ledus.S5G013900"
Ledus.S5	AUGUSTUS	start_codon	1452191	1452193	.	+	0	transcript_id "Ledus.S5G013900.t1"; gene_id "Ledus.S5G013900"
Ledus.S5	AUGUSTUS	CDS	1452191	1452973	0.83	+	0	transcript_id "Ledus.S5G013900.t1"; gene_id "Ledus.S5G013900"
Ledus.S5	AUGUSTUS	exon	1452191	1452973	.	+	.	transcript_id "Ledus.S5G013900.t1"; gene_id "Ledus.S5G013900"
Ledus.S5	AUGUSTUS	stop_codon	1452974	1452976	.	+	0	transcript_id "Ledus.S5G013900.t1"; gene_id "Ledus.S5G013900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10018.t1 is derived from g11048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11907728	11908566	.	-	.	Ledus.S3G149500
Ledus.S3	AUGUSTUS	transcript	11907728	11908566	.	-	.	transcript_id "Ledus.S3G149500.t1"; gene_id "Ledus.S3G149500"
Ledus.S3	AUGUSTUS	stop_codon	11907725	11907727	.	-	0	transcript_id "Ledus.S3G149500.t1"; gene_id "Ledus.S3G149500"
Ledus.S3	AUGUSTUS	CDS	11907728	11908203	0.46	-	2	transcript_id "Ledus.S3G149500.t1"; gene_id "Ledus.S3G149500"
Ledus.S3	AUGUSTUS	exon	11907728	11908203	.	-	.	transcript_id "Ledus.S3G149500.t1"; gene_id "Ledus.S3G149500"
Ledus.S3	AUGUSTUS	intron	11908204	11908508	.	-	.	transcript_id "Ledus.S3G149500.t1"; gene_id "Ledus.S3G149500"
Ledus.S3	AUGUSTUS	CDS	11908509	11908566	0.28	-	0	transcript_id "Ledus.S3G149500.t1"; gene_id "Ledus.S3G149500"
Ledus.S3	AUGUSTUS	exon	11908509	11908566	.	-	.	transcript_id "Ledus.S3G149500.t1"; gene_id "Ledus.S3G149500"
Ledus.S3	AUGUSTUS	start_codon	11908564	11908566	.	-	0	transcript_id "Ledus.S3G149500.t1"; gene_id "Ledus.S3G149500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9257.t1 is derived from g10287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5631937	5632617	.	+	.	Ledus.S3G073400
Ledus.S3	AUGUSTUS	transcript	5631937	5632617	.	+	.	transcript_id "Ledus.S3G073400.t1"; gene_id "Ledus.S3G073400"
Ledus.S3	AUGUSTUS	start_codon	5631937	5631939	.	+	0	transcript_id "Ledus.S3G073400.t1"; gene_id "Ledus.S3G073400"
Ledus.S3	AUGUSTUS	CDS	5631937	5632617	0.95	+	0	transcript_id "Ledus.S3G073400.t1"; gene_id "Ledus.S3G073400"
Ledus.S3	AUGUSTUS	exon	5631937	5632617	.	+	.	transcript_id "Ledus.S3G073400.t1"; gene_id "Ledus.S3G073400"
Ledus.S3	AUGUSTUS	stop_codon	5632618	5632620	.	+	0	transcript_id "Ledus.S3G073400.t1"; gene_id "Ledus.S3G073400"
# This transcript jg11354.t2 is derived from g4972.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11355.t1 is derived from g4973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3737555	3740401	.	-	.	Ledus.S4G051100
Ledus.S4	AUGUSTUS	transcript	3737555	3740401	.	-	.	transcript_id "Ledus.S4G051100.t1"; gene_id "Ledus.S4G051100"
Ledus.S4	AUGUSTUS	stop_codon	3737552	3737554	.	-	0	transcript_id "Ledus.S4G051100.t1"; gene_id "Ledus.S4G051100"
Ledus.S4	AUGUSTUS	CDS	3737555	3740401	0.85	-	0	transcript_id "Ledus.S4G051100.t1"; gene_id "Ledus.S4G051100"
Ledus.S4	AUGUSTUS	exon	3737555	3740401	.	-	.	transcript_id "Ledus.S4G051100.t1"; gene_id "Ledus.S4G051100"
Ledus.S4	AUGUSTUS	start_codon	3740399	3740401	.	-	0	transcript_id "Ledus.S4G051100.t1"; gene_id "Ledus.S4G051100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2197.t1 is derived from g9060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15896346	15896819	.	+	.	Ledus.S2G207900
Ledus.S2	AUGUSTUS	transcript	15896346	15896819	.	+	.	transcript_id "Ledus.S2G207900.t1"; gene_id "Ledus.S2G207900"
Ledus.S2	AUGUSTUS	start_codon	15896346	15896348	.	+	0	transcript_id "Ledus.S2G207900.t1"; gene_id "Ledus.S2G207900"
Ledus.S2	AUGUSTUS	CDS	15896346	15896819	1	+	0	transcript_id "Ledus.S2G207900.t1"; gene_id "Ledus.S2G207900"
Ledus.S2	AUGUSTUS	exon	15896346	15896819	.	+	.	transcript_id "Ledus.S2G207900.t1"; gene_id "Ledus.S2G207900"
Ledus.S2	AUGUSTUS	stop_codon	15896820	15896822	.	+	0	transcript_id "Ledus.S2G207900.t1"; gene_id "Ledus.S2G207900"
# This transcript jg925.t2 is derived from g7786.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg926.t1 is derived from g7787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6184582	6186111	.	-	.	Ledus.S2G080800
Ledus.S2	AUGUSTUS	transcript	6184582	6186111	.	-	.	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	stop_codon	6184579	6184581	.	-	0	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	CDS	6184582	6184677	0.67	-	0	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	exon	6184582	6184677	.	-	.	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	intron	6184678	6184798	.	-	.	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	CDS	6184799	6184867	1	-	0	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	exon	6184799	6184867	.	-	.	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	intron	6184868	6184961	.	-	.	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	CDS	6184962	6185166	1	-	1	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	exon	6184962	6185166	.	-	.	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	intron	6185167	6185290	.	-	.	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	CDS	6185291	6185373	1	-	0	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	exon	6185291	6185373	.	-	.	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	intron	6185374	6185583	.	-	.	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	CDS	6185584	6185723	1	-	2	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	exon	6185584	6185723	.	-	.	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	intron	6185724	6186065	.	-	.	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	CDS	6186066	6186111	0.89	-	0	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	exon	6186066	6186111	.	-	.	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
Ledus.S2	AUGUSTUS	start_codon	6186109	6186111	.	-	0	transcript_id "Ledus.S2G080800.t1"; gene_id "Ledus.S2G080800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7818.t1 is derived from g12489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7047005	7047538	.	-	.	Ledus.S5G059600
Ledus.S5	AUGUSTUS	transcript	7047005	7047538	.	-	.	transcript_id "Ledus.S5G059600.t1"; gene_id "Ledus.S5G059600"
Ledus.S5	AUGUSTUS	stop_codon	7047002	7047004	.	-	0	transcript_id "Ledus.S5G059600.t1"; gene_id "Ledus.S5G059600"
Ledus.S5	AUGUSTUS	CDS	7047005	7047538	0.77	-	0	transcript_id "Ledus.S5G059600.t1"; gene_id "Ledus.S5G059600"
Ledus.S5	AUGUSTUS	exon	7047005	7047538	.	-	.	transcript_id "Ledus.S5G059600.t1"; gene_id "Ledus.S5G059600"
Ledus.S5	AUGUSTUS	start_codon	7047536	7047538	.	-	0	transcript_id "Ledus.S5G059600.t1"; gene_id "Ledus.S5G059600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7040.t1 is derived from g6571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	973613	976273	.	+	.	Ledus.C7G010100
Ledus.C7	AUGUSTUS	transcript	973613	976273	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	start_codon	973613	973615	.	+	0	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	CDS	973613	973842	1	+	0	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	exon	973613	973842	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	intron	973843	974247	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	CDS	974248	974367	1	+	1	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	exon	974248	974367	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	intron	974368	974539	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	CDS	974540	974725	1	+	1	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	exon	974540	974725	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	intron	974726	974812	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	CDS	974813	974864	1	+	1	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	exon	974813	974864	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	intron	974865	974995	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	CDS	974996	975061	1	+	0	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	exon	974996	975061	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	intron	975062	975156	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	CDS	975157	975243	1	+	0	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	exon	975157	975243	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	intron	975244	975318	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	CDS	975319	975411	1	+	0	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	exon	975319	975411	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	intron	975412	975508	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	CDS	975509	975589	1	+	0	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	exon	975509	975589	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	intron	975590	975733	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	CDS	975734	975805	1	+	0	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	exon	975734	975805	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	intron	975806	975885	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	CDS	975886	975954	1	+	0	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	exon	975886	975954	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	intron	975955	976032	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	CDS	976033	976143	1	+	0	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	exon	976033	976143	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	intron	976144	976222	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	CDS	976223	976273	1	+	0	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	exon	976223	976273	.	+	.	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
Ledus.C7	AUGUSTUS	stop_codon	976274	976276	.	+	0	transcript_id "Ledus.C7G010100.t1"; gene_id "Ledus.C7G010100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3112.t1 is derived from g547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6110714	6111462	.	-	.	Ledus.S1G053300
Ledus.S1	AUGUSTUS	transcript	6110714	6111462	.	-	.	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	stop_codon	6110711	6110713	.	-	0	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	CDS	6110714	6110821	1	-	0	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	exon	6110714	6110821	.	-	.	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	intron	6110822	6110904	.	-	.	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	CDS	6110905	6110990	1	-	2	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	exon	6110905	6110990	.	-	.	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	intron	6110991	6111089	.	-	.	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	CDS	6111090	6111163	1	-	1	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	exon	6111090	6111163	.	-	.	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	intron	6111164	6111251	.	-	.	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	CDS	6111252	6111352	1	-	0	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	exon	6111252	6111352	.	-	.	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	intron	6111353	6111429	.	-	.	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	CDS	6111430	6111462	1	-	0	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	exon	6111430	6111462	.	-	.	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
Ledus.S1	AUGUSTUS	start_codon	6111460	6111462	.	-	0	transcript_id "Ledus.S1G053300.t1"; gene_id "Ledus.S1G053300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3630.t1 is derived from g1066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10300389	10304231	.	+	.	Ledus.S1G105100
Ledus.S1	AUGUSTUS	transcript	10300389	10304231	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	start_codon	10300389	10300391	.	+	0	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10300389	10300555	0.59	+	0	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10300389	10300555	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	intron	10300556	10300766	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10300767	10300826	0.72	+	1	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10300767	10300826	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	intron	10300827	10300913	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10300914	10300931	0.93	+	1	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10300914	10300931	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	intron	10300932	10301000	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10301001	10301573	0.8	+	1	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10301001	10301573	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	intron	10301574	10301869	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10301870	10302059	1	+	1	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10301870	10302059	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	intron	10302060	10302202	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10302203	10302300	1	+	0	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10302203	10302300	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	intron	10302301	10302383	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10302384	10302489	0.97	+	1	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10302384	10302489	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	intron	10302490	10302598	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10302599	10302810	0.97	+	0	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10302599	10302810	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	intron	10302811	10302916	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10302917	10302959	0.99	+	1	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10302917	10302959	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	intron	10302960	10303134	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10303135	10303388	1	+	0	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10303135	10303388	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	intron	10303389	10303535	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10303536	10303813	0.97	+	1	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10303536	10303813	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	intron	10303814	10303910	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10303911	10304020	0.97	+	2	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10303911	10304020	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	intron	10304021	10304183	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	CDS	10304184	10304231	0.92	+	0	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	exon	10304184	10304231	.	+	.	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
Ledus.S1	AUGUSTUS	stop_codon	10304232	10304234	.	+	0	transcript_id "Ledus.S1G105100.t1"; gene_id "Ledus.S1G105100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9252.t1 is derived from g10282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5620119	5622487	.	-	.	Ledus.S3G072900
Ledus.S3	AUGUSTUS	transcript	5620119	5622487	.	-	.	transcript_id "Ledus.S3G072900.t1"; gene_id "Ledus.S3G072900"
Ledus.S3	AUGUSTUS	stop_codon	5620116	5620118	.	-	0	transcript_id "Ledus.S3G072900.t1"; gene_id "Ledus.S3G072900"
Ledus.S3	AUGUSTUS	CDS	5620119	5620219	0.31	-	2	transcript_id "Ledus.S3G072900.t1"; gene_id "Ledus.S3G072900"
Ledus.S3	AUGUSTUS	exon	5620119	5620219	.	-	.	transcript_id "Ledus.S3G072900.t1"; gene_id "Ledus.S3G072900"
Ledus.S3	AUGUSTUS	intron	5620220	5621763	.	-	.	transcript_id "Ledus.S3G072900.t1"; gene_id "Ledus.S3G072900"
Ledus.S3	AUGUSTUS	CDS	5621764	5622487	0.99	-	0	transcript_id "Ledus.S3G072900.t1"; gene_id "Ledus.S3G072900"
Ledus.S3	AUGUSTUS	exon	5621764	5622487	.	-	.	transcript_id "Ledus.S3G072900.t1"; gene_id "Ledus.S3G072900"
Ledus.S3	AUGUSTUS	start_codon	5622485	5622487	.	-	0	transcript_id "Ledus.S3G072900.t1"; gene_id "Ledus.S3G072900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8358.t1 is derived from g13030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11067508	11071351	.	-	.	Ledus.S5G113600
Ledus.S5	AUGUSTUS	transcript	11067508	11071351	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	stop_codon	11067505	11067507	.	-	0	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	CDS	11067508	11067938	1	-	2	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	exon	11067508	11067938	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	intron	11067939	11068133	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	CDS	11068134	11068311	1	-	0	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	exon	11068134	11068311	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	intron	11068312	11069152	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	CDS	11069153	11069172	0.45	-	2	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	exon	11069153	11069172	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	intron	11069173	11069285	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	CDS	11069286	11069368	0.45	-	1	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	exon	11069286	11069368	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	intron	11069369	11069608	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	CDS	11069609	11069637	0.56	-	0	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	exon	11069609	11069637	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	intron	11069638	11070062	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	CDS	11070063	11070908	0.7	-	0	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	exon	11070063	11070908	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	intron	11070909	11070994	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	CDS	11070995	11071351	1	-	0	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	exon	11070995	11071351	.	-	.	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
Ledus.S5	AUGUSTUS	start_codon	11071349	11071351	.	-	0	transcript_id "Ledus.S5G113600.t1"; gene_id "Ledus.S5G113600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg193.t1 is derived from g7054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	729678	730460	.	-	.	Ledus.S2G007500
Ledus.S2	AUGUSTUS	transcript	729678	730460	.	-	.	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	stop_codon	729675	729677	.	-	0	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	CDS	729678	729679	0.94	-	2	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	exon	729678	729679	.	-	.	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	intron	729680	729766	.	-	.	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	CDS	729767	729778	0.93	-	2	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	exon	729767	729778	.	-	.	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	intron	729779	729878	.	-	.	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	CDS	729879	730078	0.67	-	1	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	exon	729879	730078	.	-	.	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	intron	730079	730275	.	-	.	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	CDS	730276	730460	0.95	-	0	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	exon	730276	730460	.	-	.	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
Ledus.S2	AUGUSTUS	start_codon	730458	730460	.	-	0	transcript_id "Ledus.S2G007500.t1"; gene_id "Ledus.S2G007500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12802.t1 is derived from g6424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14716081	14716761	.	-	.	Ledus.S4G195800
Ledus.S4	AUGUSTUS	transcript	14716081	14716761	.	-	.	transcript_id "Ledus.S4G195800.t1"; gene_id "Ledus.S4G195800"
Ledus.S4	AUGUSTUS	stop_codon	14716078	14716080	.	-	0	transcript_id "Ledus.S4G195800.t1"; gene_id "Ledus.S4G195800"
Ledus.S4	AUGUSTUS	CDS	14716081	14716761	0.52	-	0	transcript_id "Ledus.S4G195800.t1"; gene_id "Ledus.S4G195800"
Ledus.S4	AUGUSTUS	exon	14716081	14716761	.	-	.	transcript_id "Ledus.S4G195800.t1"; gene_id "Ledus.S4G195800"
Ledus.S4	AUGUSTUS	start_codon	14716759	14716761	.	-	0	transcript_id "Ledus.S4G195800.t1"; gene_id "Ledus.S4G195800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3810.t1 is derived from g1246.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12517668	12518357	.	-	.	Ledus.S1G123100
Ledus.S1	AUGUSTUS	transcript	12517668	12518357	.	-	.	transcript_id "Ledus.S1G123100.t1"; gene_id "Ledus.S1G123100"
Ledus.S1	AUGUSTUS	stop_codon	12517665	12517667	.	-	0	transcript_id "Ledus.S1G123100.t1"; gene_id "Ledus.S1G123100"
Ledus.S1	AUGUSTUS	CDS	12517668	12518357	0.82	-	0	transcript_id "Ledus.S1G123100.t1"; gene_id "Ledus.S1G123100"
Ledus.S1	AUGUSTUS	exon	12517668	12518357	.	-	.	transcript_id "Ledus.S1G123100.t1"; gene_id "Ledus.S1G123100"
Ledus.S1	AUGUSTUS	start_codon	12518355	12518357	.	-	0	transcript_id "Ledus.S1G123100.t1"; gene_id "Ledus.S1G123100"
# This transcript jg11077.t2 is derived from g4695.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11078.t1 is derived from g4696.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1626075	1628975	.	-	.	Ledus.S4G023400
Ledus.S4	AUGUSTUS	transcript	1626075	1628975	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	stop_codon	1626072	1626074	.	-	0	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1626075	1626132	0.99	-	1	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1626075	1626132	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1626133	1626263	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1626264	1626335	0.97	-	1	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1626264	1626335	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1626336	1626426	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1626427	1626513	0.84	-	1	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1626427	1626513	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1626514	1626693	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1626694	1626792	0.94	-	1	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1626694	1626792	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1626793	1626923	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1626924	1626964	0.82	-	0	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1626924	1626964	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1626965	1627113	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1627114	1627508	0.88	-	2	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1627114	1627508	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1627509	1627605	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1627606	1627678	1	-	0	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1627606	1627678	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1627679	1627771	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1627772	1627828	1	-	0	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1627772	1627828	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1627829	1627914	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1627915	1627998	1	-	0	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1627915	1627998	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1627999	1628159	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1628160	1628688	1	-	1	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1628160	1628688	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1628689	1628820	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1628821	1628975	0.72	-	0	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1628821	1628975	.	-	.	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	start_codon	1628973	1628975	.	-	0	transcript_id "Ledus.S4G023400.t1"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	transcript	1626075	1628975	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	stop_codon	1626072	1626074	.	-	0	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1626075	1626144	0.42	-	1	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1626075	1626144	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1626145	1626263	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1626264	1626335	0.64	-	1	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1626264	1626335	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1626336	1626426	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1626427	1626513	0.68	-	1	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1626427	1626513	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1626514	1626693	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1626694	1626792	0.79	-	1	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1626694	1626792	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1626793	1626923	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1626924	1626964	0.81	-	0	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1626924	1626964	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1626965	1627113	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1627114	1627508	0.84	-	2	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1627114	1627508	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1627509	1627605	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1627606	1627678	1	-	0	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1627606	1627678	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1627679	1627771	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1627772	1627828	1	-	0	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1627772	1627828	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1627829	1627914	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1627915	1627998	1	-	0	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1627915	1627998	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1627999	1628159	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1628160	1628688	1	-	1	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1628160	1628688	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	intron	1628689	1628820	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	CDS	1628821	1628975	0.69	-	0	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	exon	1628821	1628975	.	-	.	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
Ledus.S4	AUGUSTUS	start_codon	1628973	1628975	.	-	0	transcript_id "Ledus.S4G023400.t2"; gene_id "Ledus.S4G023400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12358.t1 is derived from g5979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11422520	11428077	.	-	.	Ledus.S4G151400
Ledus.S4	AUGUSTUS	transcript	11422520	11428077	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	stop_codon	11422517	11422519	.	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11422520	11422630	0.29	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11422520	11422630	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11422631	11422770	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11422771	11422840	1	-	1	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11422771	11422840	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11422841	11422916	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11422917	11423618	1	-	1	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11422917	11423618	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11423619	11423798	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11423799	11423953	1	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11423799	11423953	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11423954	11424046	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11424047	11424162	1	-	2	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11424047	11424162	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11424163	11424243	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11424244	11425609	0.99	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11424244	11425609	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11425610	11425701	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11425702	11425992	1	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11425702	11425992	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11425993	11426103	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11426104	11426254	0.84	-	1	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11426104	11426254	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11426255	11426324	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11426325	11426407	1	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11426325	11426407	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11426408	11426501	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11426502	11426552	1	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11426502	11426552	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11426553	11426645	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11426646	11426708	1	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11426646	11426708	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11426709	11426796	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11426797	11426862	1	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11426797	11426862	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11426863	11426948	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11426949	11427048	1	-	1	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11426949	11427048	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11427049	11427163	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11427164	11427258	0.98	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11427164	11427258	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11427259	11427352	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11427353	11427503	1	-	1	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11427353	11427503	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11427504	11427586	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11427587	11427786	1	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11427587	11427786	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	intron	11427787	11427864	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	CDS	11427865	11428077	0.54	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	exon	11427865	11428077	.	-	.	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
Ledus.S4	AUGUSTUS	start_codon	11428075	11428077	.	-	0	transcript_id "Ledus.S4G151400.t1"; gene_id "Ledus.S4G151400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5479.t1 is derived from g2918.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24482623	24483552	.	-	.	Ledus.S1G290000
Ledus.S1	AUGUSTUS	transcript	24482856	24483552	.	-	.	transcript_id "Ledus.S1G290000.t1"; gene_id "Ledus.S1G290000"
Ledus.S1	AUGUSTUS	stop_codon	24482853	24482855	.	-	0	transcript_id "Ledus.S1G290000.t1"; gene_id "Ledus.S1G290000"
Ledus.S1	AUGUSTUS	CDS	24482856	24482864	0.55	-	0	transcript_id "Ledus.S1G290000.t1"; gene_id "Ledus.S1G290000"
Ledus.S1	AUGUSTUS	exon	24482856	24482864	.	-	.	transcript_id "Ledus.S1G290000.t1"; gene_id "Ledus.S1G290000"
Ledus.S1	AUGUSTUS	intron	24482865	24482943	.	-	.	transcript_id "Ledus.S1G290000.t1"; gene_id "Ledus.S1G290000"
Ledus.S1	AUGUSTUS	CDS	24482944	24483552	0.41	-	0	transcript_id "Ledus.S1G290000.t1"; gene_id "Ledus.S1G290000"
Ledus.S1	AUGUSTUS	exon	24482944	24483552	.	-	.	transcript_id "Ledus.S1G290000.t1"; gene_id "Ledus.S1G290000"
Ledus.S1	AUGUSTUS	start_codon	24483550	24483552	.	-	0	transcript_id "Ledus.S1G290000.t1"; gene_id "Ledus.S1G290000"
Ledus.S1	AUGUSTUS	transcript	24482623	24483552	.	-	.	transcript_id "Ledus.S1G290000.t2"; gene_id "Ledus.S1G290000"
Ledus.S1	AUGUSTUS	stop_codon	24482620	24482622	.	-	0	transcript_id "Ledus.S1G290000.t2"; gene_id "Ledus.S1G290000"
Ledus.S1	AUGUSTUS	CDS	24482623	24483552	0.75	-	0	transcript_id "Ledus.S1G290000.t2"; gene_id "Ledus.S1G290000"
Ledus.S1	AUGUSTUS	exon	24482623	24483552	.	-	.	transcript_id "Ledus.S1G290000.t2"; gene_id "Ledus.S1G290000"
Ledus.S1	AUGUSTUS	start_codon	24483550	24483552	.	-	0	transcript_id "Ledus.S1G290000.t2"; gene_id "Ledus.S1G290000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6408.t1 is derived from g3851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31110167	31113391	.	+	.	Ledus.S1G382900
Ledus.S1	AUGUSTUS	transcript	31110167	31113391	.	+	.	transcript_id "Ledus.S1G382900.t1"; gene_id "Ledus.S1G382900"
Ledus.S1	AUGUSTUS	start_codon	31110167	31110169	.	+	0	transcript_id "Ledus.S1G382900.t1"; gene_id "Ledus.S1G382900"
Ledus.S1	AUGUSTUS	CDS	31110167	31110685	0.73	+	0	transcript_id "Ledus.S1G382900.t1"; gene_id "Ledus.S1G382900"
Ledus.S1	AUGUSTUS	exon	31110167	31110685	.	+	.	transcript_id "Ledus.S1G382900.t1"; gene_id "Ledus.S1G382900"
Ledus.S1	AUGUSTUS	intron	31110686	31110796	.	+	.	transcript_id "Ledus.S1G382900.t1"; gene_id "Ledus.S1G382900"
Ledus.S1	AUGUSTUS	CDS	31110797	31113391	0.92	+	0	transcript_id "Ledus.S1G382900.t1"; gene_id "Ledus.S1G382900"
Ledus.S1	AUGUSTUS	exon	31110797	31113391	.	+	.	transcript_id "Ledus.S1G382900.t1"; gene_id "Ledus.S1G382900"
Ledus.S1	AUGUSTUS	stop_codon	31113392	31113394	.	+	0	transcript_id "Ledus.S1G382900.t1"; gene_id "Ledus.S1G382900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4348.t1 is derived from g1784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16513796	16516390	.	+	.	Ledus.S1G176900
Ledus.S1	AUGUSTUS	transcript	16513796	16516390	.	+	.	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	start_codon	16513796	16513798	.	+	0	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	CDS	16513796	16514125	0.84	+	0	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	exon	16513796	16514125	.	+	.	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	intron	16514126	16514202	.	+	.	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	CDS	16514203	16514517	1	+	0	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	exon	16514203	16514517	.	+	.	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	intron	16514518	16514598	.	+	.	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	CDS	16514599	16514781	1	+	0	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	exon	16514599	16514781	.	+	.	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	intron	16514782	16514866	.	+	.	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	CDS	16514867	16516390	1	+	0	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	exon	16514867	16516390	.	+	.	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
Ledus.S1	AUGUSTUS	stop_codon	16516391	16516393	.	+	0	transcript_id "Ledus.S1G176900.t1"; gene_id "Ledus.S1G176900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7853.t1 is derived from g12524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7499338	7500288	.	-	.	Ledus.S5G063100
Ledus.S5	AUGUSTUS	transcript	7499338	7500288	.	-	.	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	stop_codon	7499335	7499337	.	-	0	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	CDS	7499338	7499567	0.84	-	2	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	exon	7499338	7499567	.	-	.	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	intron	7499568	7499653	.	-	.	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	CDS	7499654	7499726	1	-	0	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	exon	7499654	7499726	.	-	.	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	intron	7499727	7499868	.	-	.	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	CDS	7499869	7499984	0.75	-	2	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	exon	7499869	7499984	.	-	.	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	intron	7499985	7500092	.	-	.	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	CDS	7500093	7500123	0.75	-	0	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	exon	7500093	7500123	.	-	.	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	intron	7500124	7500285	.	-	.	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	CDS	7500286	7500288	0.75	-	0	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	exon	7500286	7500288	.	-	.	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
Ledus.S5	AUGUSTUS	start_codon	7500286	7500288	.	-	0	transcript_id "Ledus.S5G063100.t1"; gene_id "Ledus.S5G063100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8310.t1 is derived from g12982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10665713	10666069	.	-	.	Ledus.S5G108800
Ledus.S5	AUGUSTUS	transcript	10665713	10666069	.	-	.	transcript_id "Ledus.S5G108800.t1"; gene_id "Ledus.S5G108800"
Ledus.S5	AUGUSTUS	stop_codon	10665710	10665712	.	-	0	transcript_id "Ledus.S5G108800.t1"; gene_id "Ledus.S5G108800"
Ledus.S5	AUGUSTUS	CDS	10665713	10666069	0.97	-	0	transcript_id "Ledus.S5G108800.t1"; gene_id "Ledus.S5G108800"
Ledus.S5	AUGUSTUS	exon	10665713	10666069	.	-	.	transcript_id "Ledus.S5G108800.t1"; gene_id "Ledus.S5G108800"
Ledus.S5	AUGUSTUS	start_codon	10666067	10666069	.	-	0	transcript_id "Ledus.S5G108800.t1"; gene_id "Ledus.S5G108800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg3777.t1 is derived from g1213.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11943876	11946431	.	+	.	Ledus.S1G119800
Ledus.S1	AUGUSTUS	transcript	11943876	11946431	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	start_codon	11943876	11943878	.	+	0	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11943876	11943938	0.86	+	0	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11943876	11943938	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11943939	11944467	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11944468	11944597	1	+	0	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11944468	11944597	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11944598	11944738	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11944739	11944852	1	+	2	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11944739	11944852	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11944853	11944995	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11944996	11945209	0.63	+	2	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11944996	11945209	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11945210	11945309	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11945310	11945355	0.99	+	1	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11945310	11945355	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11945356	11945469	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11945470	11945545	0.99	+	0	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11945470	11945545	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11945546	11945745	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11945746	11945900	1	+	2	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11945746	11945900	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11945901	11946117	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11946118	11946154	1	+	0	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11946118	11946154	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11946155	11946315	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11946316	11946431	0.72	+	2	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11946316	11946431	.	+	.	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	stop_codon	11946432	11946434	.	+	0	transcript_id "Ledus.S1G119800.t1"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	transcript	11944029	11946431	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	start_codon	11944029	11944031	.	+	0	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11944029	11944121	0.73	+	0	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11944029	11944121	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11944122	11944467	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11944468	11944597	0.94	+	0	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11944468	11944597	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11944598	11944738	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11944739	11944852	1	+	2	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11944739	11944852	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11944853	11944995	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11944996	11945209	0.47	+	2	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11944996	11945209	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11945210	11945309	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11945310	11945355	0.99	+	1	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11945310	11945355	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11945356	11945469	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11945470	11945545	0.99	+	0	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11945470	11945545	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11945546	11945745	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11945746	11945900	1	+	2	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11945746	11945900	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11945901	11946117	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11946118	11946154	1	+	0	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11946118	11946154	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11946155	11946315	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11946316	11946431	0.76	+	2	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11946316	11946431	.	+	.	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	stop_codon	11946432	11946434	.	+	0	transcript_id "Ledus.S1G119800.t2"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	transcript	11943876	11946431	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	start_codon	11943876	11943878	.	+	0	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11943876	11943938	0.9	+	0	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11943876	11943938	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11943939	11944467	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11944468	11944597	1	+	0	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11944468	11944597	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11944598	11944738	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11944739	11944852	1	+	2	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11944739	11944852	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11944853	11944995	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11944996	11945209	0.56	+	2	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11944996	11945209	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11945210	11945309	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11945310	11945355	0.98	+	1	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11945310	11945355	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11945356	11945469	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11945470	11945545	0.68	+	0	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11945470	11945545	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11945546	11945742	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11945743	11945900	0.81	+	2	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11945743	11945900	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11945901	11946117	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11946118	11946154	1	+	0	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11946118	11946154	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	intron	11946155	11946315	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	CDS	11946316	11946431	0.76	+	2	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	exon	11946316	11946431	.	+	.	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
Ledus.S1	AUGUSTUS	stop_codon	11946432	11946434	.	+	0	transcript_id "Ledus.S1G119800.t3"; gene_id "Ledus.S1G119800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12341.t1 is derived from g5962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11321517	11322505	.	-	.	Ledus.S4G149700
Ledus.S4	AUGUSTUS	transcript	11321517	11322505	.	-	.	transcript_id "Ledus.S4G149700.t1"; gene_id "Ledus.S4G149700"
Ledus.S4	AUGUSTUS	stop_codon	11321514	11321516	.	-	0	transcript_id "Ledus.S4G149700.t1"; gene_id "Ledus.S4G149700"
Ledus.S4	AUGUSTUS	CDS	11321517	11321536	0.98	-	2	transcript_id "Ledus.S4G149700.t1"; gene_id "Ledus.S4G149700"
Ledus.S4	AUGUSTUS	exon	11321517	11321536	.	-	.	transcript_id "Ledus.S4G149700.t1"; gene_id "Ledus.S4G149700"
Ledus.S4	AUGUSTUS	intron	11321537	11321631	.	-	.	transcript_id "Ledus.S4G149700.t1"; gene_id "Ledus.S4G149700"
Ledus.S4	AUGUSTUS	CDS	11321632	11321735	0.88	-	1	transcript_id "Ledus.S4G149700.t1"; gene_id "Ledus.S4G149700"
Ledus.S4	AUGUSTUS	exon	11321632	11321735	.	-	.	transcript_id "Ledus.S4G149700.t1"; gene_id "Ledus.S4G149700"
Ledus.S4	AUGUSTUS	intron	11321736	11321813	.	-	.	transcript_id "Ledus.S4G149700.t1"; gene_id "Ledus.S4G149700"
Ledus.S4	AUGUSTUS	CDS	11321814	11322505	0.19	-	0	transcript_id "Ledus.S4G149700.t1"; gene_id "Ledus.S4G149700"
Ledus.S4	AUGUSTUS	exon	11321814	11322505	.	-	.	transcript_id "Ledus.S4G149700.t1"; gene_id "Ledus.S4G149700"
Ledus.S4	AUGUSTUS	start_codon	11322503	11322505	.	-	0	transcript_id "Ledus.S4G149700.t1"; gene_id "Ledus.S4G149700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10483.t1 is derived from g11513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15539257	15541180	.	-	.	Ledus.S3G196000
Ledus.S3	AUGUSTUS	transcript	15539257	15541180	.	-	.	transcript_id "Ledus.S3G196000.t1"; gene_id "Ledus.S3G196000"
Ledus.S3	AUGUSTUS	stop_codon	15539254	15539256	.	-	0	transcript_id "Ledus.S3G196000.t1"; gene_id "Ledus.S3G196000"
Ledus.S3	AUGUSTUS	CDS	15539257	15540335	0.93	-	2	transcript_id "Ledus.S3G196000.t1"; gene_id "Ledus.S3G196000"
Ledus.S3	AUGUSTUS	exon	15539257	15540335	.	-	.	transcript_id "Ledus.S3G196000.t1"; gene_id "Ledus.S3G196000"
Ledus.S3	AUGUSTUS	intron	15540336	15540464	.	-	.	transcript_id "Ledus.S3G196000.t1"; gene_id "Ledus.S3G196000"
Ledus.S3	AUGUSTUS	CDS	15540465	15540644	1	-	2	transcript_id "Ledus.S3G196000.t1"; gene_id "Ledus.S3G196000"
Ledus.S3	AUGUSTUS	exon	15540465	15540644	.	-	.	transcript_id "Ledus.S3G196000.t1"; gene_id "Ledus.S3G196000"
Ledus.S3	AUGUSTUS	intron	15540645	15540753	.	-	.	transcript_id "Ledus.S3G196000.t1"; gene_id "Ledus.S3G196000"
Ledus.S3	AUGUSTUS	CDS	15540754	15541180	0.3	-	0	transcript_id "Ledus.S3G196000.t1"; gene_id "Ledus.S3G196000"
Ledus.S3	AUGUSTUS	exon	15540754	15541180	.	-	.	transcript_id "Ledus.S3G196000.t1"; gene_id "Ledus.S3G196000"
Ledus.S3	AUGUSTUS	start_codon	15541178	15541180	.	-	0	transcript_id "Ledus.S3G196000.t1"; gene_id "Ledus.S3G196000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6234.t1 is derived from g3677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29788262	29789770	.	+	.	Ledus.S1G365500
Ledus.S1	AUGUSTUS	transcript	29788262	29789770	.	+	.	transcript_id "Ledus.S1G365500.t1"; gene_id "Ledus.S1G365500"
Ledus.S1	AUGUSTUS	start_codon	29788262	29788264	.	+	0	transcript_id "Ledus.S1G365500.t1"; gene_id "Ledus.S1G365500"
Ledus.S1	AUGUSTUS	CDS	29788262	29789770	0.48	+	0	transcript_id "Ledus.S1G365500.t1"; gene_id "Ledus.S1G365500"
Ledus.S1	AUGUSTUS	exon	29788262	29789770	.	+	.	transcript_id "Ledus.S1G365500.t1"; gene_id "Ledus.S1G365500"
Ledus.S1	AUGUSTUS	stop_codon	29789771	29789773	.	+	0	transcript_id "Ledus.S1G365500.t1"; gene_id "Ledus.S1G365500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7682.t1 is derived from g12353.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5149970	5151598	.	+	.	Ledus.S5G046000
Ledus.S5	AUGUSTUS	transcript	5149970	5150940	.	+	.	transcript_id "Ledus.S5G046000.t1"; gene_id "Ledus.S5G046000"
Ledus.S5	AUGUSTUS	start_codon	5149970	5149972	.	+	0	transcript_id "Ledus.S5G046000.t1"; gene_id "Ledus.S5G046000"
Ledus.S5	AUGUSTUS	CDS	5149970	5150880	0.81	+	0	transcript_id "Ledus.S5G046000.t1"; gene_id "Ledus.S5G046000"
Ledus.S5	AUGUSTUS	exon	5149970	5150880	.	+	.	transcript_id "Ledus.S5G046000.t1"; gene_id "Ledus.S5G046000"
Ledus.S5	AUGUSTUS	intron	5150881	5150939	.	+	.	transcript_id "Ledus.S5G046000.t1"; gene_id "Ledus.S5G046000"
Ledus.S5	AUGUSTUS	CDS	5150940	5150940	1	+	1	transcript_id "Ledus.S5G046000.t1"; gene_id "Ledus.S5G046000"
Ledus.S5	AUGUSTUS	exon	5150940	5150940	.	+	.	transcript_id "Ledus.S5G046000.t1"; gene_id "Ledus.S5G046000"
Ledus.S5	AUGUSTUS	stop_codon	5150941	5150943	.	+	0	transcript_id "Ledus.S5G046000.t1"; gene_id "Ledus.S5G046000"
Ledus.S5	AUGUSTUS	transcript	5149970	5151598	.	+	.	transcript_id "Ledus.S5G046000.t2"; gene_id "Ledus.S5G046000"
Ledus.S5	AUGUSTUS	start_codon	5149970	5149972	.	+	0	transcript_id "Ledus.S5G046000.t2"; gene_id "Ledus.S5G046000"
Ledus.S5	AUGUSTUS	CDS	5149970	5151598	0.97	+	0	transcript_id "Ledus.S5G046000.t2"; gene_id "Ledus.S5G046000"
Ledus.S5	AUGUSTUS	exon	5149970	5151598	.	+	.	transcript_id "Ledus.S5G046000.t2"; gene_id "Ledus.S5G046000"
Ledus.S5	AUGUSTUS	stop_codon	5151599	5151601	.	+	0	transcript_id "Ledus.S5G046000.t2"; gene_id "Ledus.S5G046000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg48.t1 is derived from g9461.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	101086	103027	.	-	.	Ledus.C8G000800
Ledus.C8	AUGUSTUS	transcript	101086	103027	.	-	.	transcript_id "Ledus.C8G000800.t1"; gene_id "Ledus.C8G000800"
Ledus.C8	AUGUSTUS	stop_codon	101083	101085	.	-	0	transcript_id "Ledus.C8G000800.t1"; gene_id "Ledus.C8G000800"
Ledus.C8	AUGUSTUS	CDS	101086	101892	1	-	0	transcript_id "Ledus.C8G000800.t1"; gene_id "Ledus.C8G000800"
Ledus.C8	AUGUSTUS	exon	101086	101892	.	-	.	transcript_id "Ledus.C8G000800.t1"; gene_id "Ledus.C8G000800"
Ledus.C8	AUGUSTUS	intron	101893	102265	.	-	.	transcript_id "Ledus.C8G000800.t1"; gene_id "Ledus.C8G000800"
Ledus.C8	AUGUSTUS	CDS	102266	103027	0.51	-	0	transcript_id "Ledus.C8G000800.t1"; gene_id "Ledus.C8G000800"
Ledus.C8	AUGUSTUS	exon	102266	103027	.	-	.	transcript_id "Ledus.C8G000800.t1"; gene_id "Ledus.C8G000800"
Ledus.C8	AUGUSTUS	start_codon	103025	103027	.	-	0	transcript_id "Ledus.C8G000800.t1"; gene_id "Ledus.C8G000800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6921.t1 is derived from g4365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35437910	35439089	.	-	.	Ledus.S1G434200
Ledus.S1	AUGUSTUS	transcript	35437910	35439089	.	-	.	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	stop_codon	35437907	35437909	.	-	0	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	CDS	35437910	35438009	1	-	1	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	exon	35437910	35438009	.	-	.	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	intron	35438010	35438094	.	-	.	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	CDS	35438095	35438198	1	-	0	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	exon	35438095	35438198	.	-	.	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	intron	35438199	35438372	.	-	.	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	CDS	35438373	35438434	1	-	2	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	exon	35438373	35438434	.	-	.	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	intron	35438435	35438560	.	-	.	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	CDS	35438561	35438669	1	-	0	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	exon	35438561	35438669	.	-	.	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	intron	35438670	35438745	.	-	.	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	CDS	35438746	35438886	1	-	0	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	exon	35438746	35438886	.	-	.	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	intron	35438887	35438996	.	-	.	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	CDS	35438997	35439089	0.96	-	0	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	exon	35438997	35439089	.	-	.	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
Ledus.S1	AUGUSTUS	start_codon	35439087	35439089	.	-	0	transcript_id "Ledus.S1G434200.t1"; gene_id "Ledus.S1G434200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3012.t1 is derived from g447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5331154	5333040	.	+	.	Ledus.S1G043300
Ledus.S1	AUGUSTUS	transcript	5331154	5333040	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	start_codon	5331154	5331156	.	+	0	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	CDS	5331154	5331411	0.7	+	0	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	exon	5331154	5331411	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	intron	5331412	5331561	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	CDS	5331562	5331686	1	+	0	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	exon	5331562	5331686	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	intron	5331687	5331811	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	CDS	5331812	5331962	1	+	1	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	exon	5331812	5331962	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	intron	5331963	5332173	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	CDS	5332174	5332284	1	+	0	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	exon	5332174	5332284	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	intron	5332285	5332415	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	CDS	5332416	5332554	1	+	0	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	exon	5332416	5332554	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	intron	5332555	5332647	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	CDS	5332648	5332763	1	+	2	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	exon	5332648	5332763	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	intron	5332764	5332851	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	CDS	5332852	5333040	0.64	+	0	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	exon	5332852	5333040	.	+	.	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
Ledus.S1	AUGUSTUS	stop_codon	5333041	5333043	.	+	0	transcript_id "Ledus.S1G043300.t1"; gene_id "Ledus.S1G043300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2025.t1 is derived from g8888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14222655	14225581	.	-	.	Ledus.S2G190700
Ledus.S2	AUGUSTUS	transcript	14222655	14225581	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	stop_codon	14222652	14222654	.	-	0	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	CDS	14222655	14223050	1	-	0	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	exon	14222655	14223050	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	intron	14223051	14223149	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	CDS	14223150	14223548	1	-	0	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	exon	14223150	14223548	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	intron	14223549	14223636	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	CDS	14223637	14223826	1	-	1	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	exon	14223637	14223826	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	intron	14223827	14223956	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	CDS	14223957	14224055	1	-	1	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	exon	14223957	14224055	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	intron	14224056	14224143	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	CDS	14224144	14224286	1	-	0	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	exon	14224144	14224286	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	intron	14224287	14224400	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	CDS	14224401	14224480	1	-	2	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	exon	14224401	14224480	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	intron	14224481	14224588	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	CDS	14224589	14224841	1	-	0	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	exon	14224589	14224841	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	intron	14224842	14224993	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	CDS	14224994	14225581	0.93	-	0	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	exon	14224994	14225581	.	-	.	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
Ledus.S2	AUGUSTUS	start_codon	14225579	14225581	.	-	0	transcript_id "Ledus.S2G190700.t1"; gene_id "Ledus.S2G190700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg676.t1 is derived from g7537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4050032	4051560	.	-	.	Ledus.S2G055800
Ledus.S2	AUGUSTUS	transcript	4050032	4051560	.	-	.	transcript_id "Ledus.S2G055800.t1"; gene_id "Ledus.S2G055800"
Ledus.S2	AUGUSTUS	stop_codon	4050029	4050031	.	-	0	transcript_id "Ledus.S2G055800.t1"; gene_id "Ledus.S2G055800"
Ledus.S2	AUGUSTUS	CDS	4050032	4050673	1	-	0	transcript_id "Ledus.S2G055800.t1"; gene_id "Ledus.S2G055800"
Ledus.S2	AUGUSTUS	exon	4050032	4050673	.	-	.	transcript_id "Ledus.S2G055800.t1"; gene_id "Ledus.S2G055800"
Ledus.S2	AUGUSTUS	intron	4050674	4050762	.	-	.	transcript_id "Ledus.S2G055800.t1"; gene_id "Ledus.S2G055800"
Ledus.S2	AUGUSTUS	CDS	4050763	4051560	0.72	-	0	transcript_id "Ledus.S2G055800.t1"; gene_id "Ledus.S2G055800"
Ledus.S2	AUGUSTUS	exon	4050763	4051560	.	-	.	transcript_id "Ledus.S2G055800.t1"; gene_id "Ledus.S2G055800"
Ledus.S2	AUGUSTUS	start_codon	4051558	4051560	.	-	0	transcript_id "Ledus.S2G055800.t1"; gene_id "Ledus.S2G055800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9967.t1 is derived from g10997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11605488	11605909	.	+	.	Ledus.S3G144400
Ledus.S3	AUGUSTUS	transcript	11605488	11605909	.	+	.	transcript_id "Ledus.S3G144400.t1"; gene_id "Ledus.S3G144400"
Ledus.S3	AUGUSTUS	start_codon	11605488	11605490	.	+	0	transcript_id "Ledus.S3G144400.t1"; gene_id "Ledus.S3G144400"
Ledus.S3	AUGUSTUS	CDS	11605488	11605543	0.94	+	0	transcript_id "Ledus.S3G144400.t1"; gene_id "Ledus.S3G144400"
Ledus.S3	AUGUSTUS	exon	11605488	11605543	.	+	.	transcript_id "Ledus.S3G144400.t1"; gene_id "Ledus.S3G144400"
Ledus.S3	AUGUSTUS	intron	11605544	11605617	.	+	.	transcript_id "Ledus.S3G144400.t1"; gene_id "Ledus.S3G144400"
Ledus.S3	AUGUSTUS	CDS	11605618	11605909	0.95	+	1	transcript_id "Ledus.S3G144400.t1"; gene_id "Ledus.S3G144400"
Ledus.S3	AUGUSTUS	exon	11605618	11605909	.	+	.	transcript_id "Ledus.S3G144400.t1"; gene_id "Ledus.S3G144400"
Ledus.S3	AUGUSTUS	stop_codon	11605910	11605912	.	+	0	transcript_id "Ledus.S3G144400.t1"; gene_id "Ledus.S3G144400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6980.t1 is derived from g6511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	521324	521987	.	+	.	Ledus.C7G004100
Ledus.C7	AUGUSTUS	transcript	521324	521987	.	+	.	transcript_id "Ledus.C7G004100.t1"; gene_id "Ledus.C7G004100"
Ledus.C7	AUGUSTUS	start_codon	521324	521326	.	+	0	transcript_id "Ledus.C7G004100.t1"; gene_id "Ledus.C7G004100"
Ledus.C7	AUGUSTUS	CDS	521324	521631	0.99	+	0	transcript_id "Ledus.C7G004100.t1"; gene_id "Ledus.C7G004100"
Ledus.C7	AUGUSTUS	exon	521324	521631	.	+	.	transcript_id "Ledus.C7G004100.t1"; gene_id "Ledus.C7G004100"
Ledus.C7	AUGUSTUS	intron	521632	521719	.	+	.	transcript_id "Ledus.C7G004100.t1"; gene_id "Ledus.C7G004100"
Ledus.C7	AUGUSTUS	CDS	521720	521987	1	+	1	transcript_id "Ledus.C7G004100.t1"; gene_id "Ledus.C7G004100"
Ledus.C7	AUGUSTUS	exon	521720	521987	.	+	.	transcript_id "Ledus.C7G004100.t1"; gene_id "Ledus.C7G004100"
Ledus.C7	AUGUSTUS	stop_codon	521988	521990	.	+	0	transcript_id "Ledus.C7G004100.t1"; gene_id "Ledus.C7G004100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5194.t1 is derived from g2633.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22412996	22414883	.	+	.	Ledus.S1G261500
Ledus.S1	AUGUSTUS	transcript	22412996	22414883	.	+	.	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	start_codon	22412996	22412998	.	+	0	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	CDS	22412996	22413623	0.4	+	0	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	exon	22412996	22413623	.	+	.	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	intron	22413624	22413727	.	+	.	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	CDS	22413728	22413780	0.99	+	2	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	exon	22413728	22413780	.	+	.	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	intron	22413781	22413887	.	+	.	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	CDS	22413888	22414019	0.94	+	0	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	exon	22413888	22414019	.	+	.	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	intron	22414020	22414297	.	+	.	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	CDS	22414298	22414459	1	+	0	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	exon	22414298	22414459	.	+	.	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	intron	22414460	22414580	.	+	.	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	CDS	22414581	22414883	0.99	+	0	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	exon	22414581	22414883	.	+	.	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
Ledus.S1	AUGUSTUS	stop_codon	22414884	22414886	.	+	0	transcript_id "Ledus.S1G261500.t1"; gene_id "Ledus.S1G261500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12041.t1 is derived from g5660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9142677	9149057	.	-	.	Ledus.S4G119700
Ledus.S4	AUGUSTUS	transcript	9142677	9149057	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	stop_codon	9142674	9142676	.	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9142677	9142749	0.78	-	1	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9142677	9142749	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9142750	9142829	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9142830	9142890	0.79	-	2	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9142830	9142890	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9142891	9143030	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9143031	9143168	0.7	-	2	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9143031	9143168	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9143169	9143358	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9143359	9144276	0.72	-	2	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9143359	9144276	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9144277	9144429	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9144430	9144499	1	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9144430	9144499	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9144500	9144685	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9144686	9144760	0.76	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9144686	9144760	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9144761	9144849	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9144850	9145080	0.47	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9144850	9145080	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9145081	9145198	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9145199	9145420	0.98	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9145199	9145420	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9145421	9145520	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9145521	9145933	1	-	2	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9145521	9145933	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9145934	9146388	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9146389	9146524	1	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9146389	9146524	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9146525	9146617	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9146618	9147250	0.33	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9146618	9147250	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9147251	9147506	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9147507	9147512	0.41	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9147507	9147512	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9147513	9147788	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9147789	9147923	0.62	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9147789	9147923	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9147924	9148008	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9148009	9148043	0.62	-	2	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9148009	9148043	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9148044	9148108	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9148109	9148154	0.62	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9148109	9148154	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9148155	9148231	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9148232	9148309	1	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9148232	9148309	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9148310	9148390	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9148391	9148441	0.53	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9148391	9148441	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9148442	9148593	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9148594	9148710	0.85	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9148594	9148710	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9148711	9148797	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9148798	9148847	0.99	-	2	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9148798	9148847	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	intron	9148848	9148996	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	CDS	9148997	9149057	0.67	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	exon	9148997	9149057	.	-	.	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
Ledus.S4	AUGUSTUS	start_codon	9149055	9149057	.	-	0	transcript_id "Ledus.S4G119700.t1"; gene_id "Ledus.S4G119700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1456.t1 is derived from g8317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10296395	10299643	.	-	.	Ledus.S2G133800
Ledus.S2	AUGUSTUS	transcript	10296395	10299643	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	stop_codon	10296392	10296394	.	-	0	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10296395	10296493	0.99	-	0	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10296395	10296493	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	intron	10296494	10296573	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10296574	10296701	1	-	2	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10296574	10296701	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	intron	10296702	10296781	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10296782	10296877	0.98	-	2	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10296782	10296877	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	intron	10296878	10296981	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10296982	10297065	1	-	2	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10296982	10297065	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	intron	10297066	10297158	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10297159	10297261	1	-	0	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10297159	10297261	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	intron	10297262	10297356	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10297357	10297458	1	-	0	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10297357	10297458	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	intron	10297459	10297540	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10297541	10297633	1	-	0	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10297541	10297633	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	intron	10297634	10297726	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10297727	10297845	1	-	2	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10297727	10297845	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	intron	10297846	10297928	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10297929	10298056	1	-	1	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10297929	10298056	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	intron	10298057	10298135	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10298136	10298362	0.94	-	0	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10298136	10298362	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	intron	10298363	10298546	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10298547	10299011	0.38	-	0	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10298547	10299011	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	intron	10299012	10299120	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10299121	10299259	0.76	-	1	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10299121	10299259	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	intron	10299260	10299377	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	CDS	10299378	10299643	0.62	-	0	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	exon	10299378	10299643	.	-	.	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
Ledus.S2	AUGUSTUS	start_codon	10299641	10299643	.	-	0	transcript_id "Ledus.S2G133800.t1"; gene_id "Ledus.S2G133800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg984.t1 is derived from g7845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6503591	6504243	.	+	.	Ledus.S2G086600
Ledus.S2	AUGUSTUS	transcript	6503591	6504243	.	+	.	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	start_codon	6503591	6503593	.	+	0	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	CDS	6503591	6503730	0.27	+	0	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	exon	6503591	6503730	.	+	.	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	intron	6503731	6503867	.	+	.	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	CDS	6503868	6503930	0.54	+	1	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	exon	6503868	6503930	.	+	.	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	intron	6503931	6504019	.	+	.	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	CDS	6504020	6504055	0.58	+	1	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	exon	6504020	6504055	.	+	.	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	intron	6504056	6504125	.	+	.	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	CDS	6504126	6504243	0.31	+	1	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	exon	6504126	6504243	.	+	.	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
Ledus.S2	AUGUSTUS	stop_codon	6504244	6504246	.	+	0	transcript_id "Ledus.S2G086600.t1"; gene_id "Ledus.S2G086600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5835.t1 is derived from g3277.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27221637	27224163	.	-	.	Ledus.S1G325600
Ledus.S1	AUGUSTUS	transcript	27222102	27224163	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	stop_codon	27222099	27222101	.	-	0	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27222102	27222167	0.8	-	0	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27222102	27222167	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27222168	27222265	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27222266	27222322	0.98	-	0	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27222266	27222322	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27222323	27222451	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27222452	27222554	0.99	-	1	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27222452	27222554	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27222555	27222707	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27222708	27222816	0.71	-	2	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27222708	27222816	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27222817	27223365	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27223366	27223438	0.7	-	0	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27223366	27223438	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27223439	27223546	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27223547	27223768	0.24	-	0	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27223547	27223768	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27223769	27223869	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27223870	27224163	0.18	-	0	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27223870	27224163	.	-	.	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	start_codon	27224161	27224163	.	-	0	transcript_id "Ledus.S1G325600.t1"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	transcript	27221637	27224163	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	stop_codon	27221634	27221636	.	-	0	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27221637	27221661	0.97	-	1	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27221637	27221661	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27221662	27221814	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27221815	27221918	0.45	-	0	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27221815	27221918	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27221919	27222068	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27222069	27222077	0.44	-	0	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27222069	27222077	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27222078	27222150	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27222151	27222174	0.45	-	0	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27222151	27222174	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27222175	27222265	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27222266	27222322	1	-	0	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27222266	27222322	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27222323	27222451	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27222452	27222554	1	-	1	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27222452	27222554	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27222555	27222707	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27222708	27222816	0.71	-	2	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27222708	27222816	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27222817	27223365	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27223366	27223438	0.7	-	0	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27223366	27223438	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27223439	27223546	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27223547	27223768	0.31	-	0	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27223547	27223768	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	intron	27223769	27223869	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	CDS	27223870	27224163	0.2	-	0	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	exon	27223870	27224163	.	-	.	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
Ledus.S1	AUGUSTUS	start_codon	27224161	27224163	.	-	0	transcript_id "Ledus.S1G325600.t2"; gene_id "Ledus.S1G325600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11086.t1 is derived from g4704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1702191	1702871	.	+	.	Ledus.S4G024200
Ledus.S4	AUGUSTUS	transcript	1702191	1702871	.	+	.	transcript_id "Ledus.S4G024200.t1"; gene_id "Ledus.S4G024200"
Ledus.S4	AUGUSTUS	start_codon	1702191	1702193	.	+	0	transcript_id "Ledus.S4G024200.t1"; gene_id "Ledus.S4G024200"
Ledus.S4	AUGUSTUS	CDS	1702191	1702871	0.25	+	0	transcript_id "Ledus.S4G024200.t1"; gene_id "Ledus.S4G024200"
Ledus.S4	AUGUSTUS	exon	1702191	1702871	.	+	.	transcript_id "Ledus.S4G024200.t1"; gene_id "Ledus.S4G024200"
Ledus.S4	AUGUSTUS	stop_codon	1702872	1702874	.	+	0	transcript_id "Ledus.S4G024200.t1"; gene_id "Ledus.S4G024200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1971.t1 is derived from g8834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13967476	13972306	.	+	.	Ledus.S2G185300
Ledus.S2	AUGUSTUS	transcript	13967476	13972306	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	start_codon	13967476	13967478	.	+	0	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13967476	13967682	0.78	+	0	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13967476	13967682	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13967683	13967839	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13967840	13968178	1	+	0	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13967840	13968178	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13968179	13968262	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13968263	13968501	1	+	0	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13968263	13968501	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13968502	13968686	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13968687	13968843	1	+	1	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13968687	13968843	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13968844	13969018	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13969019	13969096	1	+	0	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13969019	13969096	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13969097	13969264	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13969265	13969336	1	+	0	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13969265	13969336	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13969337	13969540	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13969541	13969660	1	+	0	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13969541	13969660	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13969661	13969817	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13969818	13969991	1	+	0	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13969818	13969991	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13969992	13970132	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13970133	13970643	0.79	+	0	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13970133	13970643	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13970644	13970745	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13970746	13970902	0.99	+	2	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13970746	13970902	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13970903	13971001	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13971002	13971111	1	+	1	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13971002	13971111	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13971112	13971288	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13971289	13971401	0.93	+	2	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13971289	13971401	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13971402	13971512	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13971513	13971876	0.7	+	0	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13971513	13971876	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	intron	13971877	13972013	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	CDS	13972014	13972306	0.99	+	2	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	exon	13972014	13972306	.	+	.	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
Ledus.S2	AUGUSTUS	stop_codon	13972307	13972309	.	+	0	transcript_id "Ledus.S2G185300.t1"; gene_id "Ledus.S2G185300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1788.t1 is derived from g8651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12609329	12611394	.	+	.	Ledus.S2G167000
Ledus.S2	AUGUSTUS	transcript	12609329	12611394	.	+	.	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	start_codon	12609329	12609331	.	+	0	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	CDS	12609329	12609468	0.9	+	0	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	exon	12609329	12609468	.	+	.	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	intron	12609469	12609639	.	+	.	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	CDS	12609640	12609843	1	+	1	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	exon	12609640	12609843	.	+	.	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	intron	12609844	12609998	.	+	.	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	CDS	12609999	12610076	1	+	1	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	exon	12609999	12610076	.	+	.	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	intron	12610077	12610236	.	+	.	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	CDS	12610237	12610564	0.99	+	1	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	exon	12610237	12610564	.	+	.	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	intron	12610565	12610688	.	+	.	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	CDS	12610689	12611134	0.95	+	0	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	exon	12610689	12611134	.	+	.	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	intron	12611135	12611258	.	+	.	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	CDS	12611259	12611394	0.77	+	1	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	exon	12611259	12611394	.	+	.	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
Ledus.S2	AUGUSTUS	stop_codon	12611395	12611397	.	+	0	transcript_id "Ledus.S2G167000.t1"; gene_id "Ledus.S2G167000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10864.t1 is derived from g4482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	158230	158541	.	+	.	Ledus.S4G002000
Ledus.S4	AUGUSTUS	transcript	158230	158541	.	+	.	transcript_id "Ledus.S4G002000.t1"; gene_id "Ledus.S4G002000"
Ledus.S4	AUGUSTUS	start_codon	158230	158232	.	+	0	transcript_id "Ledus.S4G002000.t1"; gene_id "Ledus.S4G002000"
Ledus.S4	AUGUSTUS	CDS	158230	158541	0.99	+	0	transcript_id "Ledus.S4G002000.t1"; gene_id "Ledus.S4G002000"
Ledus.S4	AUGUSTUS	exon	158230	158541	.	+	.	transcript_id "Ledus.S4G002000.t1"; gene_id "Ledus.S4G002000"
Ledus.S4	AUGUSTUS	stop_codon	158542	158544	.	+	0	transcript_id "Ledus.S4G002000.t1"; gene_id "Ledus.S4G002000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg302.t1 is derived from g7163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1490876	1492039	.	+	.	Ledus.S2G018400
Ledus.S2	AUGUSTUS	transcript	1490876	1492039	.	+	.	transcript_id "Ledus.S2G018400.t1"; gene_id "Ledus.S2G018400"
Ledus.S2	AUGUSTUS	start_codon	1490876	1490878	.	+	0	transcript_id "Ledus.S2G018400.t1"; gene_id "Ledus.S2G018400"
Ledus.S2	AUGUSTUS	CDS	1490876	1492039	0.38	+	0	transcript_id "Ledus.S2G018400.t1"; gene_id "Ledus.S2G018400"
Ledus.S2	AUGUSTUS	exon	1490876	1492039	.	+	.	transcript_id "Ledus.S2G018400.t1"; gene_id "Ledus.S2G018400"
Ledus.S2	AUGUSTUS	stop_codon	1492040	1492042	.	+	0	transcript_id "Ledus.S2G018400.t1"; gene_id "Ledus.S2G018400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8977.t1 is derived from g10007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3645695	3646668	.	+	.	Ledus.S3G045400
Ledus.S3	AUGUSTUS	transcript	3645695	3646668	.	+	.	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	start_codon	3645695	3645697	.	+	0	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	CDS	3645695	3645715	0.84	+	0	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	exon	3645695	3645715	.	+	.	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	intron	3645716	3645840	.	+	.	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	CDS	3645841	3646116	0.97	+	0	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	exon	3645841	3646116	.	+	.	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	intron	3646117	3646244	.	+	.	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	CDS	3646245	3646403	1	+	0	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	exon	3646245	3646403	.	+	.	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	intron	3646404	3646497	.	+	.	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	CDS	3646498	3646668	0.97	+	0	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	exon	3646498	3646668	.	+	.	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
Ledus.S3	AUGUSTUS	stop_codon	3646669	3646671	.	+	0	transcript_id "Ledus.S3G045400.t1"; gene_id "Ledus.S3G045400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg67.t1 is derived from g9480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	199833	200298	.	-	.	Ledus.C8G002700
Ledus.C8	AUGUSTUS	transcript	199833	200298	.	-	.	transcript_id "Ledus.C8G002700.t1"; gene_id "Ledus.C8G002700"
Ledus.C8	AUGUSTUS	stop_codon	199830	199832	.	-	0	transcript_id "Ledus.C8G002700.t1"; gene_id "Ledus.C8G002700"
Ledus.C8	AUGUSTUS	CDS	199833	199996	0.71	-	2	transcript_id "Ledus.C8G002700.t1"; gene_id "Ledus.C8G002700"
Ledus.C8	AUGUSTUS	exon	199833	199996	.	-	.	transcript_id "Ledus.C8G002700.t1"; gene_id "Ledus.C8G002700"
Ledus.C8	AUGUSTUS	intron	199997	200063	.	-	.	transcript_id "Ledus.C8G002700.t1"; gene_id "Ledus.C8G002700"
Ledus.C8	AUGUSTUS	CDS	200064	200123	0.46	-	2	transcript_id "Ledus.C8G002700.t1"; gene_id "Ledus.C8G002700"
Ledus.C8	AUGUSTUS	exon	200064	200123	.	-	.	transcript_id "Ledus.C8G002700.t1"; gene_id "Ledus.C8G002700"
Ledus.C8	AUGUSTUS	intron	200124	200210	.	-	.	transcript_id "Ledus.C8G002700.t1"; gene_id "Ledus.C8G002700"
Ledus.C8	AUGUSTUS	CDS	200211	200298	0.6	-	0	transcript_id "Ledus.C8G002700.t1"; gene_id "Ledus.C8G002700"
Ledus.C8	AUGUSTUS	exon	200211	200298	.	-	.	transcript_id "Ledus.C8G002700.t1"; gene_id "Ledus.C8G002700"
Ledus.C8	AUGUSTUS	start_codon	200296	200298	.	-	0	transcript_id "Ledus.C8G002700.t1"; gene_id "Ledus.C8G002700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3469.t1 is derived from g904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8528580	8530876	.	-	.	Ledus.S1G089000
Ledus.S1	AUGUSTUS	transcript	8528580	8530876	.	-	.	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	stop_codon	8528577	8528579	.	-	0	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	CDS	8528580	8528715	0.98	-	1	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	exon	8528580	8528715	.	-	.	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	intron	8528716	8528928	.	-	.	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	CDS	8528929	8529056	1	-	0	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	exon	8528929	8529056	.	-	.	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	intron	8529057	8529146	.	-	.	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	CDS	8529147	8529236	1	-	0	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	exon	8529147	8529236	.	-	.	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	intron	8529237	8529336	.	-	.	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	CDS	8529337	8529437	1	-	2	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	exon	8529337	8529437	.	-	.	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	intron	8529438	8529522	.	-	.	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	CDS	8529523	8530045	1	-	0	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	exon	8529523	8530045	.	-	.	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	intron	8530046	8530144	.	-	.	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	CDS	8530145	8530876	1	-	0	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	exon	8530145	8530876	.	-	.	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
Ledus.S1	AUGUSTUS	start_codon	8530874	8530876	.	-	0	transcript_id "Ledus.S1G089000.t1"; gene_id "Ledus.S1G089000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6882.t1 is derived from g4326.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34934059	34936342	.	+	.	Ledus.S1G430300
Ledus.S1	AUGUSTUS	transcript	34934059	34936342	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	start_codon	34934059	34934061	.	+	0	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34934059	34934112	0.72	+	0	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34934059	34934112	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34934113	34934199	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34934200	34934268	0.6	+	0	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34934200	34934268	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34934269	34934332	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34934333	34934353	0.79	+	0	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34934333	34934353	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34934354	34934421	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34934422	34934542	0.99	+	0	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34934422	34934542	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34934543	34934626	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34934627	34934663	1	+	2	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34934627	34934663	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34934664	34934769	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34934770	34934797	1	+	1	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34934770	34934797	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34934798	34934929	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34934930	34935082	1	+	0	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34934930	34935082	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34935083	34935204	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34935205	34935307	1	+	0	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34935205	34935307	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34935308	34935396	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34935397	34935407	0.74	+	2	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34935397	34935407	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34935408	34935590	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34935591	34935669	0.27	+	0	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34935591	34935669	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34935670	34935868	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34935869	34935880	0.86	+	2	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34935869	34935880	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34935881	34935962	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34935963	34936017	1	+	2	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34935963	34936017	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34936018	34936096	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34936097	34936201	0.44	+	1	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34936097	34936201	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	intron	34936202	34936332	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	CDS	34936333	34936342	0.22	+	1	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	exon	34936333	34936342	.	+	.	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
Ledus.S1	AUGUSTUS	stop_codon	34936343	34936345	.	+	0	transcript_id "Ledus.S1G430300.t1"; gene_id "Ledus.S1G430300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6218.t1 is derived from g3661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29719934	29723520	.	+	.	Ledus.S1G363900
Ledus.S1	AUGUSTUS	transcript	29719934	29723520	.	+	.	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	start_codon	29719934	29719936	.	+	0	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	CDS	29719934	29721316	0.47	+	0	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	exon	29719934	29721316	.	+	.	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	intron	29721317	29721644	.	+	.	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	CDS	29721645	29721871	1	+	0	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	exon	29721645	29721871	.	+	.	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	intron	29721872	29721973	.	+	.	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	CDS	29721974	29722556	0.99	+	1	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	exon	29721974	29722556	.	+	.	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	intron	29722557	29722624	.	+	.	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	CDS	29722625	29722960	0.99	+	0	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	exon	29722625	29722960	.	+	.	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	intron	29722961	29723042	.	+	.	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	CDS	29723043	29723166	1	+	0	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	exon	29723043	29723166	.	+	.	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	intron	29723167	29723284	.	+	.	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	CDS	29723285	29723520	0.77	+	2	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	exon	29723285	29723520	.	+	.	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
Ledus.S1	AUGUSTUS	stop_codon	29723521	29723523	.	+	0	transcript_id "Ledus.S1G363900.t1"; gene_id "Ledus.S1G363900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5066.t1 is derived from g2505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21428004	21429087	.	+	.	Ledus.S1G248700
Ledus.S1	AUGUSTUS	transcript	21428004	21429087	.	+	.	transcript_id "Ledus.S1G248700.t1"; gene_id "Ledus.S1G248700"
Ledus.S1	AUGUSTUS	start_codon	21428004	21428006	.	+	0	transcript_id "Ledus.S1G248700.t1"; gene_id "Ledus.S1G248700"
Ledus.S1	AUGUSTUS	CDS	21428004	21428043	0.01	+	0	transcript_id "Ledus.S1G248700.t1"; gene_id "Ledus.S1G248700"
Ledus.S1	AUGUSTUS	exon	21428004	21428043	.	+	.	transcript_id "Ledus.S1G248700.t1"; gene_id "Ledus.S1G248700"
Ledus.S1	AUGUSTUS	intron	21428044	21428362	.	+	.	transcript_id "Ledus.S1G248700.t1"; gene_id "Ledus.S1G248700"
Ledus.S1	AUGUSTUS	CDS	21428363	21428528	0.02	+	2	transcript_id "Ledus.S1G248700.t1"; gene_id "Ledus.S1G248700"
Ledus.S1	AUGUSTUS	exon	21428363	21428528	.	+	.	transcript_id "Ledus.S1G248700.t1"; gene_id "Ledus.S1G248700"
Ledus.S1	AUGUSTUS	intron	21428529	21429026	.	+	.	transcript_id "Ledus.S1G248700.t1"; gene_id "Ledus.S1G248700"
Ledus.S1	AUGUSTUS	CDS	21429027	21429087	0.49	+	1	transcript_id "Ledus.S1G248700.t1"; gene_id "Ledus.S1G248700"
Ledus.S1	AUGUSTUS	exon	21429027	21429087	.	+	.	transcript_id "Ledus.S1G248700.t1"; gene_id "Ledus.S1G248700"
Ledus.S1	AUGUSTUS	stop_codon	21429088	21429090	.	+	0	transcript_id "Ledus.S1G248700.t1"; gene_id "Ledus.S1G248700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2265.t1 is derived from g9128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16750332	16751841	.	+	.	Ledus.S2G214700
Ledus.S2	AUGUSTUS	transcript	16750332	16751841	.	+	.	transcript_id "Ledus.S2G214700.t1"; gene_id "Ledus.S2G214700"
Ledus.S2	AUGUSTUS	start_codon	16750332	16750334	.	+	0	transcript_id "Ledus.S2G214700.t1"; gene_id "Ledus.S2G214700"
Ledus.S2	AUGUSTUS	CDS	16750332	16750541	0.82	+	0	transcript_id "Ledus.S2G214700.t1"; gene_id "Ledus.S2G214700"
Ledus.S2	AUGUSTUS	exon	16750332	16750541	.	+	.	transcript_id "Ledus.S2G214700.t1"; gene_id "Ledus.S2G214700"
Ledus.S2	AUGUSTUS	intron	16750542	16750629	.	+	.	transcript_id "Ledus.S2G214700.t1"; gene_id "Ledus.S2G214700"
Ledus.S2	AUGUSTUS	CDS	16750630	16751841	0.99	+	0	transcript_id "Ledus.S2G214700.t1"; gene_id "Ledus.S2G214700"
Ledus.S2	AUGUSTUS	exon	16750630	16751841	.	+	.	transcript_id "Ledus.S2G214700.t1"; gene_id "Ledus.S2G214700"
Ledus.S2	AUGUSTUS	stop_codon	16751842	16751844	.	+	0	transcript_id "Ledus.S2G214700.t1"; gene_id "Ledus.S2G214700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11590.t1 is derived from g5208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5425257	5428607	.	+	.	Ledus.S4G074600
Ledus.S4	AUGUSTUS	transcript	5425257	5428607	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	start_codon	5425257	5425259	.	+	0	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	CDS	5425257	5426429	0.94	+	0	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	exon	5425257	5426429	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	intron	5426430	5426537	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	CDS	5426538	5426638	1	+	0	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	exon	5426538	5426638	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	intron	5426639	5426756	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	CDS	5426757	5426871	1	+	1	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	exon	5426757	5426871	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	intron	5426872	5426954	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	CDS	5426955	5427032	1	+	0	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	exon	5426955	5427032	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	intron	5427033	5427229	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	CDS	5427230	5427322	1	+	0	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	exon	5427230	5427322	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	intron	5427323	5427400	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	CDS	5427401	5427484	1	+	0	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	exon	5427401	5427484	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	intron	5427485	5427567	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	CDS	5427568	5427666	1	+	0	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	exon	5427568	5427666	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	intron	5427667	5427758	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	CDS	5427759	5427821	1	+	0	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	exon	5427759	5427821	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	intron	5427822	5427916	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	CDS	5427917	5427947	1	+	0	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	exon	5427917	5427947	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	intron	5427948	5428064	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	CDS	5428065	5428111	1	+	2	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	exon	5428065	5428111	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	intron	5428112	5428195	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	CDS	5428196	5428254	1	+	0	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	exon	5428196	5428254	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	intron	5428255	5428348	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	CDS	5428349	5428607	0.84	+	1	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	exon	5428349	5428607	.	+	.	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
Ledus.S4	AUGUSTUS	stop_codon	5428608	5428610	.	+	0	transcript_id "Ledus.S4G074600.t1"; gene_id "Ledus.S4G074600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8176.t1 is derived from g12847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9685740	9686773	.	-	.	Ledus.S5G095400
Ledus.S5	AUGUSTUS	transcript	9685740	9686773	.	-	.	transcript_id "Ledus.S5G095400.t1"; gene_id "Ledus.S5G095400"
Ledus.S5	AUGUSTUS	stop_codon	9685737	9685739	.	-	0	transcript_id "Ledus.S5G095400.t1"; gene_id "Ledus.S5G095400"
Ledus.S5	AUGUSTUS	CDS	9685740	9686162	0.98	-	0	transcript_id "Ledus.S5G095400.t1"; gene_id "Ledus.S5G095400"
Ledus.S5	AUGUSTUS	exon	9685740	9686162	.	-	.	transcript_id "Ledus.S5G095400.t1"; gene_id "Ledus.S5G095400"
Ledus.S5	AUGUSTUS	intron	9686163	9686233	.	-	.	transcript_id "Ledus.S5G095400.t1"; gene_id "Ledus.S5G095400"
Ledus.S5	AUGUSTUS	CDS	9686234	9686773	1	-	0	transcript_id "Ledus.S5G095400.t1"; gene_id "Ledus.S5G095400"
Ledus.S5	AUGUSTUS	exon	9686234	9686773	.	-	.	transcript_id "Ledus.S5G095400.t1"; gene_id "Ledus.S5G095400"
Ledus.S5	AUGUSTUS	start_codon	9686771	9686773	.	-	0	transcript_id "Ledus.S5G095400.t1"; gene_id "Ledus.S5G095400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3609.t1 is derived from g1045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10189958	10190952	.	+	.	Ledus.S1G103000
Ledus.S1	AUGUSTUS	transcript	10189958	10190952	.	+	.	transcript_id "Ledus.S1G103000.t1"; gene_id "Ledus.S1G103000"
Ledus.S1	AUGUSTUS	start_codon	10189958	10189960	.	+	0	transcript_id "Ledus.S1G103000.t1"; gene_id "Ledus.S1G103000"
Ledus.S1	AUGUSTUS	CDS	10189958	10190616	0.97	+	0	transcript_id "Ledus.S1G103000.t1"; gene_id "Ledus.S1G103000"
Ledus.S1	AUGUSTUS	exon	10189958	10190616	.	+	.	transcript_id "Ledus.S1G103000.t1"; gene_id "Ledus.S1G103000"
Ledus.S1	AUGUSTUS	intron	10190617	10190705	.	+	.	transcript_id "Ledus.S1G103000.t1"; gene_id "Ledus.S1G103000"
Ledus.S1	AUGUSTUS	CDS	10190706	10190952	1	+	1	transcript_id "Ledus.S1G103000.t1"; gene_id "Ledus.S1G103000"
Ledus.S1	AUGUSTUS	exon	10190706	10190952	.	+	.	transcript_id "Ledus.S1G103000.t1"; gene_id "Ledus.S1G103000"
Ledus.S1	AUGUSTUS	stop_codon	10190953	10190955	.	+	0	transcript_id "Ledus.S1G103000.t1"; gene_id "Ledus.S1G103000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4599.t1 is derived from g2036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18020890	18022104	.	-	.	Ledus.S1G202000
Ledus.S1	AUGUSTUS	transcript	18020890	18022104	.	-	.	transcript_id "Ledus.S1G202000.t1"; gene_id "Ledus.S1G202000"
Ledus.S1	AUGUSTUS	stop_codon	18020887	18020889	.	-	0	transcript_id "Ledus.S1G202000.t1"; gene_id "Ledus.S1G202000"
Ledus.S1	AUGUSTUS	CDS	18020890	18022104	0.94	-	0	transcript_id "Ledus.S1G202000.t1"; gene_id "Ledus.S1G202000"
Ledus.S1	AUGUSTUS	exon	18020890	18022104	.	-	.	transcript_id "Ledus.S1G202000.t1"; gene_id "Ledus.S1G202000"
Ledus.S1	AUGUSTUS	start_codon	18022102	18022104	.	-	0	transcript_id "Ledus.S1G202000.t1"; gene_id "Ledus.S1G202000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7511.t1 is derived from g12182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3522192	3522656	.	-	.	Ledus.S5G028900
Ledus.S5	AUGUSTUS	transcript	3522192	3522656	.	-	.	transcript_id "Ledus.S5G028900.t1"; gene_id "Ledus.S5G028900"
Ledus.S5	AUGUSTUS	stop_codon	3522189	3522191	.	-	0	transcript_id "Ledus.S5G028900.t1"; gene_id "Ledus.S5G028900"
Ledus.S5	AUGUSTUS	CDS	3522192	3522656	0.54	-	0	transcript_id "Ledus.S5G028900.t1"; gene_id "Ledus.S5G028900"
Ledus.S5	AUGUSTUS	exon	3522192	3522656	.	-	.	transcript_id "Ledus.S5G028900.t1"; gene_id "Ledus.S5G028900"
Ledus.S5	AUGUSTUS	start_codon	3522654	3522656	.	-	0	transcript_id "Ledus.S5G028900.t1"; gene_id "Ledus.S5G028900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10877.t1 is derived from g4495.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	284080	285186	.	+	.	Ledus.S4G003300
Ledus.S4	AUGUSTUS	transcript	284080	285186	.	+	.	transcript_id "Ledus.S4G003300.t1"; gene_id "Ledus.S4G003300"
Ledus.S4	AUGUSTUS	start_codon	284080	284082	.	+	0	transcript_id "Ledus.S4G003300.t1"; gene_id "Ledus.S4G003300"
Ledus.S4	AUGUSTUS	CDS	284080	285186	0.94	+	0	transcript_id "Ledus.S4G003300.t1"; gene_id "Ledus.S4G003300"
Ledus.S4	AUGUSTUS	exon	284080	285186	.	+	.	transcript_id "Ledus.S4G003300.t1"; gene_id "Ledus.S4G003300"
Ledus.S4	AUGUSTUS	stop_codon	285187	285189	.	+	0	transcript_id "Ledus.S4G003300.t1"; gene_id "Ledus.S4G003300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3553.t1 is derived from g989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9450495	9450776	.	-	.	Ledus.S1G097400
Ledus.S1	AUGUSTUS	transcript	9450495	9450776	.	-	.	transcript_id "Ledus.S1G097400.t1"; gene_id "Ledus.S1G097400"
Ledus.S1	AUGUSTUS	stop_codon	9450492	9450494	.	-	0	transcript_id "Ledus.S1G097400.t1"; gene_id "Ledus.S1G097400"
Ledus.S1	AUGUSTUS	CDS	9450495	9450776	0.99	-	0	transcript_id "Ledus.S1G097400.t1"; gene_id "Ledus.S1G097400"
Ledus.S1	AUGUSTUS	exon	9450495	9450776	.	-	.	transcript_id "Ledus.S1G097400.t1"; gene_id "Ledus.S1G097400"
Ledus.S1	AUGUSTUS	start_codon	9450774	9450776	.	-	0	transcript_id "Ledus.S1G097400.t1"; gene_id "Ledus.S1G097400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8054.t1 is derived from g12725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8843633	8844551	.	+	.	Ledus.S5G083200
Ledus.S5	AUGUSTUS	transcript	8843633	8844551	.	+	.	transcript_id "Ledus.S5G083200.t1"; gene_id "Ledus.S5G083200"
Ledus.S5	AUGUSTUS	start_codon	8843633	8843635	.	+	0	transcript_id "Ledus.S5G083200.t1"; gene_id "Ledus.S5G083200"
Ledus.S5	AUGUSTUS	CDS	8843633	8843885	0.9	+	0	transcript_id "Ledus.S5G083200.t1"; gene_id "Ledus.S5G083200"
Ledus.S5	AUGUSTUS	exon	8843633	8843885	.	+	.	transcript_id "Ledus.S5G083200.t1"; gene_id "Ledus.S5G083200"
Ledus.S5	AUGUSTUS	intron	8843886	8843991	.	+	.	transcript_id "Ledus.S5G083200.t1"; gene_id "Ledus.S5G083200"
Ledus.S5	AUGUSTUS	CDS	8843992	8844072	0.92	+	2	transcript_id "Ledus.S5G083200.t1"; gene_id "Ledus.S5G083200"
Ledus.S5	AUGUSTUS	exon	8843992	8844072	.	+	.	transcript_id "Ledus.S5G083200.t1"; gene_id "Ledus.S5G083200"
Ledus.S5	AUGUSTUS	intron	8844073	8844309	.	+	.	transcript_id "Ledus.S5G083200.t1"; gene_id "Ledus.S5G083200"
Ledus.S5	AUGUSTUS	CDS	8844310	8844551	0.95	+	2	transcript_id "Ledus.S5G083200.t1"; gene_id "Ledus.S5G083200"
Ledus.S5	AUGUSTUS	exon	8844310	8844551	.	+	.	transcript_id "Ledus.S5G083200.t1"; gene_id "Ledus.S5G083200"
Ledus.S5	AUGUSTUS	stop_codon	8844552	8844554	.	+	0	transcript_id "Ledus.S5G083200.t1"; gene_id "Ledus.S5G083200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9386.t1 is derived from g10416.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6463383	6464834	.	+	.	Ledus.S3G086300
Ledus.S3	AUGUSTUS	transcript	6463383	6464834	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	start_codon	6463383	6463385	.	+	0	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	CDS	6463383	6463630	0.74	+	0	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	exon	6463383	6463630	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	intron	6463631	6463772	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	CDS	6463773	6463857	1	+	1	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	exon	6463773	6463857	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	intron	6463858	6463939	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	CDS	6463940	6463996	0.99	+	0	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	exon	6463940	6463996	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	intron	6463997	6464147	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	CDS	6464148	6464192	0.54	+	0	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	exon	6464148	6464192	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	intron	6464193	6464280	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	CDS	6464281	6464322	0.7	+	0	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	exon	6464281	6464322	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	intron	6464323	6464437	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	CDS	6464438	6464494	1	+	0	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	exon	6464438	6464494	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	intron	6464495	6464572	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	CDS	6464573	6464584	0.79	+	0	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	exon	6464573	6464584	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	intron	6464585	6464655	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	CDS	6464656	6464677	0.79	+	0	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	exon	6464656	6464677	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	intron	6464678	6464766	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	CDS	6464767	6464834	0.78	+	2	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	exon	6464767	6464834	.	+	.	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
Ledus.S3	AUGUSTUS	stop_codon	6464835	6464837	.	+	0	transcript_id "Ledus.S3G086300.t1"; gene_id "Ledus.S3G086300"
# This transcript jg3737.t2 is derived from g1173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3738.t1 is derived from g1175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11269524	11269986	.	+	.	Ledus.S1G116000
Ledus.S1	AUGUSTUS	transcript	11269524	11269986	.	+	.	transcript_id "Ledus.S1G116000.t1"; gene_id "Ledus.S1G116000"
Ledus.S1	AUGUSTUS	start_codon	11269524	11269526	.	+	0	transcript_id "Ledus.S1G116000.t1"; gene_id "Ledus.S1G116000"
Ledus.S1	AUGUSTUS	CDS	11269524	11269660	0.45	+	0	transcript_id "Ledus.S1G116000.t1"; gene_id "Ledus.S1G116000"
Ledus.S1	AUGUSTUS	exon	11269524	11269660	.	+	.	transcript_id "Ledus.S1G116000.t1"; gene_id "Ledus.S1G116000"
Ledus.S1	AUGUSTUS	intron	11269661	11269880	.	+	.	transcript_id "Ledus.S1G116000.t1"; gene_id "Ledus.S1G116000"
Ledus.S1	AUGUSTUS	CDS	11269881	11269986	0.89	+	1	transcript_id "Ledus.S1G116000.t1"; gene_id "Ledus.S1G116000"
Ledus.S1	AUGUSTUS	exon	11269881	11269986	.	+	.	transcript_id "Ledus.S1G116000.t1"; gene_id "Ledus.S1G116000"
Ledus.S1	AUGUSTUS	stop_codon	11269987	11269989	.	+	0	transcript_id "Ledus.S1G116000.t1"; gene_id "Ledus.S1G116000"
# This transcript jg1054.t2 is derived from g7916.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1056.t1 is derived from g7917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7028492	7030336	.	-	.	Ledus.S2G093800
Ledus.S2	AUGUSTUS	transcript	7028492	7030336	.	-	.	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	stop_codon	7028489	7028491	.	-	0	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	CDS	7028492	7028601	1	-	2	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	exon	7028492	7028601	.	-	.	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	intron	7028602	7028760	.	-	.	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	CDS	7028761	7028872	1	-	0	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	exon	7028761	7028872	.	-	.	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	intron	7028873	7028976	.	-	.	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	CDS	7028977	7029052	0.97	-	1	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	exon	7028977	7029052	.	-	.	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	intron	7029053	7029152	.	-	.	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	CDS	7029153	7030137	0.99	-	2	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	exon	7029153	7030137	.	-	.	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	intron	7030138	7030245	.	-	.	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	CDS	7030246	7030336	1	-	0	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	exon	7030246	7030336	.	-	.	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
Ledus.S2	AUGUSTUS	start_codon	7030334	7030336	.	-	0	transcript_id "Ledus.S2G093800.t1"; gene_id "Ledus.S2G093800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3370.t1 is derived from g805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7887834	7888526	.	-	.	Ledus.S1G079100
Ledus.S1	AUGUSTUS	transcript	7887834	7888526	.	-	.	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	stop_codon	7887831	7887833	.	-	0	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	CDS	7887834	7887857	0.99	-	0	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	exon	7887834	7887857	.	-	.	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	intron	7887858	7888031	.	-	.	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	CDS	7888032	7888093	0.66	-	2	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	exon	7888032	7888093	.	-	.	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	intron	7888094	7888156	.	-	.	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	CDS	7888157	7888267	0.4	-	2	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	exon	7888157	7888267	.	-	.	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	intron	7888268	7888371	.	-	.	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	CDS	7888372	7888397	1	-	1	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	exon	7888372	7888397	.	-	.	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	intron	7888398	7888473	.	-	.	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	CDS	7888474	7888526	0.57	-	0	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	exon	7888474	7888526	.	-	.	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
Ledus.S1	AUGUSTUS	start_codon	7888524	7888526	.	-	0	transcript_id "Ledus.S1G079100.t1"; gene_id "Ledus.S1G079100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4919.t1 is derived from g2357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20626035	20628987	.	+	.	Ledus.S1G234000
Ledus.S1	AUGUSTUS	transcript	20626035	20628987	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	start_codon	20626035	20626037	.	+	0	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	CDS	20626035	20626287	0.87	+	0	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	exon	20626035	20626287	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	intron	20626288	20626382	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	CDS	20626383	20626759	1	+	2	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	exon	20626383	20626759	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	intron	20626760	20626879	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	CDS	20626880	20627060	1	+	0	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	exon	20626880	20627060	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	intron	20627061	20627140	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	CDS	20627141	20627241	0.96	+	2	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	exon	20627141	20627241	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	intron	20627242	20627347	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	CDS	20627348	20627494	0.99	+	0	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	exon	20627348	20627494	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	intron	20627495	20627656	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	CDS	20627657	20627780	1	+	0	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	exon	20627657	20627780	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	intron	20627781	20627861	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	CDS	20627862	20627959	1	+	2	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	exon	20627862	20627959	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	intron	20627960	20628092	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	CDS	20628093	20628482	1	+	0	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	exon	20628093	20628482	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	intron	20628483	20628557	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	CDS	20628558	20628689	0.71	+	0	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	exon	20628558	20628689	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	intron	20628690	20628790	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	CDS	20628791	20628811	0.52	+	0	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	exon	20628791	20628811	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	intron	20628812	20628972	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	CDS	20628973	20628987	0.76	+	0	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	exon	20628973	20628987	.	+	.	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
Ledus.S1	AUGUSTUS	stop_codon	20628988	20628990	.	+	0	transcript_id "Ledus.S1G234000.t1"; gene_id "Ledus.S1G234000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3425.t1 is derived from g860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8249357	8250108	.	-	.	Ledus.S1G084600
Ledus.S1	AUGUSTUS	transcript	8249357	8250108	.	-	.	transcript_id "Ledus.S1G084600.t1"; gene_id "Ledus.S1G084600"
Ledus.S1	AUGUSTUS	stop_codon	8249354	8249356	.	-	0	transcript_id "Ledus.S1G084600.t1"; gene_id "Ledus.S1G084600"
Ledus.S1	AUGUSTUS	CDS	8249357	8249646	1	-	2	transcript_id "Ledus.S1G084600.t1"; gene_id "Ledus.S1G084600"
Ledus.S1	AUGUSTUS	exon	8249357	8249646	.	-	.	transcript_id "Ledus.S1G084600.t1"; gene_id "Ledus.S1G084600"
Ledus.S1	AUGUSTUS	intron	8249647	8249738	.	-	.	transcript_id "Ledus.S1G084600.t1"; gene_id "Ledus.S1G084600"
Ledus.S1	AUGUSTUS	CDS	8249739	8250108	1	-	0	transcript_id "Ledus.S1G084600.t1"; gene_id "Ledus.S1G084600"
Ledus.S1	AUGUSTUS	exon	8249739	8250108	.	-	.	transcript_id "Ledus.S1G084600.t1"; gene_id "Ledus.S1G084600"
Ledus.S1	AUGUSTUS	start_codon	8250106	8250108	.	-	0	transcript_id "Ledus.S1G084600.t1"; gene_id "Ledus.S1G084600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5548.t1 is derived from g2987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25069287	25070215	.	-	.	Ledus.S1G296900
Ledus.S1	AUGUSTUS	transcript	25069287	25070215	.	-	.	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	stop_codon	25069284	25069286	.	-	0	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	CDS	25069287	25069321	1	-	2	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	exon	25069287	25069321	.	-	.	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	intron	25069322	25069421	.	-	.	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	CDS	25069422	25069490	1	-	2	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	exon	25069422	25069490	.	-	.	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	intron	25069491	25069587	.	-	.	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	CDS	25069588	25069689	1	-	2	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	exon	25069588	25069689	.	-	.	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	intron	25069690	25069815	.	-	.	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	CDS	25069816	25069921	1	-	0	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	exon	25069816	25069921	.	-	.	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	intron	25069922	25070194	.	-	.	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	CDS	25070195	25070215	0.83	-	0	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	exon	25070195	25070215	.	-	.	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
Ledus.S1	AUGUSTUS	start_codon	25070213	25070215	.	-	0	transcript_id "Ledus.S1G296900.t1"; gene_id "Ledus.S1G296900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2705.t1 is derived from g138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2251666	2251902	.	-	.	Ledus.S1G012600
Ledus.S1	AUGUSTUS	transcript	2251666	2251902	.	-	.	transcript_id "Ledus.S1G012600.t1"; gene_id "Ledus.S1G012600"
Ledus.S1	AUGUSTUS	stop_codon	2251663	2251665	.	-	0	transcript_id "Ledus.S1G012600.t1"; gene_id "Ledus.S1G012600"
Ledus.S1	AUGUSTUS	CDS	2251666	2251902	0.65	-	0	transcript_id "Ledus.S1G012600.t1"; gene_id "Ledus.S1G012600"
Ledus.S1	AUGUSTUS	exon	2251666	2251902	.	-	.	transcript_id "Ledus.S1G012600.t1"; gene_id "Ledus.S1G012600"
Ledus.S1	AUGUSTUS	start_codon	2251900	2251902	.	-	0	transcript_id "Ledus.S1G012600.t1"; gene_id "Ledus.S1G012600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6154.t1 is derived from g3597.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29302239	29307353	.	-	.	Ledus.S1G357500
Ledus.S1	AUGUSTUS	transcript	29302239	29307353	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	stop_codon	29302236	29302238	.	-	0	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29302239	29303432	0.95	-	0	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29302239	29303432	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29303433	29303601	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29303602	29303718	1	-	0	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29303602	29303718	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29303719	29303826	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29303827	29303960	0.99	-	2	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29303827	29303960	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29303961	29304150	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29304151	29304208	1	-	0	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29304151	29304208	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29304209	29304351	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29304352	29304447	1	-	0	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29304352	29304447	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29304448	29304683	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29304684	29304862	1	-	2	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29304684	29304862	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29304863	29305011	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29305012	29305167	1	-	2	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29305012	29305167	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29305168	29305346	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29305347	29305583	1	-	2	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29305347	29305583	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29305584	29305682	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29305683	29306633	1	-	2	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29305683	29306633	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29306634	29307298	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29307299	29307353	1	-	0	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29307299	29307353	.	-	.	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	start_codon	29307351	29307353	.	-	0	transcript_id "Ledus.S1G357500.t1"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	transcript	29302239	29307353	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	stop_codon	29302236	29302238	.	-	0	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29302239	29303432	0.99	-	0	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29302239	29303432	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29303433	29303601	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29303602	29303718	1	-	0	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29303602	29303718	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29303719	29303826	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29303827	29303960	0.96	-	2	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29303827	29303960	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29303961	29304138	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29304139	29304208	1	-	0	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29304139	29304208	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29304209	29304351	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29304352	29304447	1	-	0	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29304352	29304447	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29304448	29304683	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29304684	29304862	1	-	2	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29304684	29304862	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29304863	29305011	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29305012	29305167	1	-	2	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29305012	29305167	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29305168	29305346	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29305347	29305583	1	-	2	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29305347	29305583	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29305584	29305682	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29305683	29306633	0.99	-	2	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29305683	29306633	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	intron	29306634	29307298	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	CDS	29307299	29307353	1	-	0	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	exon	29307299	29307353	.	-	.	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
Ledus.S1	AUGUSTUS	start_codon	29307351	29307353	.	-	0	transcript_id "Ledus.S1G357500.t2"; gene_id "Ledus.S1G357500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3989.t1 is derived from g1425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13925080	13929701	.	-	.	Ledus.S1G141000
Ledus.S1	AUGUSTUS	transcript	13925080	13929701	.	-	.	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	stop_codon	13925077	13925079	.	-	0	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	CDS	13925080	13925262	0.96	-	0	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	exon	13925080	13925262	.	-	.	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	intron	13925263	13925502	.	-	.	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	CDS	13925503	13925670	1	-	0	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	exon	13925503	13925670	.	-	.	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	intron	13925671	13925769	.	-	.	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	CDS	13925770	13925847	1	-	0	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	exon	13925770	13925847	.	-	.	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	intron	13925848	13926031	.	-	.	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	CDS	13926032	13929457	0.98	-	0	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	exon	13926032	13929457	.	-	.	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	intron	13929458	13929653	.	-	.	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	CDS	13929654	13929701	0.97	-	0	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	exon	13929654	13929701	.	-	.	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
Ledus.S1	AUGUSTUS	start_codon	13929699	13929701	.	-	0	transcript_id "Ledus.S1G141000.t1"; gene_id "Ledus.S1G141000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7506.t1 is derived from g12177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3503892	3504362	.	-	.	Ledus.S5G028400
Ledus.S5	AUGUSTUS	transcript	3503892	3504362	.	-	.	transcript_id "Ledus.S5G028400.t1"; gene_id "Ledus.S5G028400"
Ledus.S5	AUGUSTUS	stop_codon	3503889	3503891	.	-	0	transcript_id "Ledus.S5G028400.t1"; gene_id "Ledus.S5G028400"
Ledus.S5	AUGUSTUS	CDS	3503892	3504362	0.83	-	0	transcript_id "Ledus.S5G028400.t1"; gene_id "Ledus.S5G028400"
Ledus.S5	AUGUSTUS	exon	3503892	3504362	.	-	.	transcript_id "Ledus.S5G028400.t1"; gene_id "Ledus.S5G028400"
Ledus.S5	AUGUSTUS	start_codon	3504360	3504362	.	-	0	transcript_id "Ledus.S5G028400.t1"; gene_id "Ledus.S5G028400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9524.t1 is derived from g10554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7581637	7584889	.	+	.	Ledus.S3G100100
Ledus.S3	AUGUSTUS	transcript	7581637	7584889	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	start_codon	7581637	7581639	.	+	0	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	CDS	7581637	7581680	0.91	+	0	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	exon	7581637	7581680	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	intron	7581681	7581762	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	CDS	7581763	7581936	1	+	1	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	exon	7581763	7581936	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	intron	7581937	7582017	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	CDS	7582018	7582617	1	+	1	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	exon	7582018	7582617	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	intron	7582618	7582691	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	CDS	7582692	7582760	1	+	1	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	exon	7582692	7582760	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	intron	7582761	7582843	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	CDS	7582844	7582900	1	+	1	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	exon	7582844	7582900	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	intron	7582901	7582993	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	CDS	7582994	7583046	1	+	1	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	exon	7582994	7583046	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	intron	7583047	7583138	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	CDS	7583139	7583214	1	+	2	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	exon	7583139	7583214	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	intron	7583215	7583355	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	CDS	7583356	7584889	0.92	+	1	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	exon	7583356	7584889	.	+	.	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
Ledus.S3	AUGUSTUS	stop_codon	7584890	7584892	.	+	0	transcript_id "Ledus.S3G100100.t1"; gene_id "Ledus.S3G100100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11943.t1 is derived from g5562.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7914590	7916811	.	+	.	Ledus.S4G109900
Ledus.S4	AUGUSTUS	transcript	7914590	7916811	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	start_codon	7914590	7914592	.	+	0	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7914590	7914800	0.54	+	0	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7914590	7914800	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	intron	7914801	7914929	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7914930	7915431	1	+	2	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7914930	7915431	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	intron	7915432	7915519	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7915520	7915577	0.68	+	1	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7915520	7915577	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	intron	7915578	7916188	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7916189	7916259	0.83	+	0	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7916189	7916259	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	intron	7916260	7916328	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7916329	7916373	0.24	+	1	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7916329	7916373	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	intron	7916374	7916470	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7916471	7916501	0.23	+	1	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7916471	7916501	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	intron	7916502	7916799	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7916800	7916811	0.19	+	0	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7916800	7916811	.	+	.	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	stop_codon	7916812	7916814	.	+	0	transcript_id "Ledus.S4G109900.t1"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	transcript	7914590	7916811	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	start_codon	7914590	7914592	.	+	0	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7914590	7914800	0.6	+	0	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7914590	7914800	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	intron	7914801	7914929	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7914930	7915431	0.77	+	2	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7914930	7915431	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	intron	7915432	7915775	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7915776	7915825	0.33	+	1	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7915776	7915825	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	intron	7915826	7916216	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7916217	7916259	0.15	+	2	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7916217	7916259	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	intron	7916260	7916328	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7916329	7916373	0.21	+	1	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7916329	7916373	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	intron	7916374	7916470	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7916471	7916501	0.2	+	1	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7916471	7916501	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	intron	7916502	7916799	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	CDS	7916800	7916811	0.18	+	0	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	exon	7916800	7916811	.	+	.	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
Ledus.S4	AUGUSTUS	stop_codon	7916812	7916814	.	+	0	transcript_id "Ledus.S4G109900.t2"; gene_id "Ledus.S4G109900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10664.t1 is derived from g11694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16929681	16932417	.	+	.	Ledus.S3G214100
Ledus.S3	AUGUSTUS	transcript	16929681	16932417	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	start_codon	16929681	16929683	.	+	0	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	CDS	16929681	16929767	0.65	+	0	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	exon	16929681	16929767	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	intron	16929768	16929898	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	CDS	16929899	16929964	1	+	0	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	exon	16929899	16929964	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	intron	16929965	16930072	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	CDS	16930073	16930171	1	+	0	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	exon	16930073	16930171	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	intron	16930172	16930260	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	CDS	16930261	16930330	1	+	0	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	exon	16930261	16930330	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	intron	16930331	16930615	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	CDS	16930616	16930733	1	+	2	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	exon	16930616	16930733	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	intron	16930734	16930823	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	CDS	16930824	16930980	1	+	1	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	exon	16930824	16930980	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	intron	16930981	16931089	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	CDS	16931090	16931170	1	+	0	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	exon	16931090	16931170	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	intron	16931171	16931269	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	CDS	16931270	16931377	1	+	0	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	exon	16931270	16931377	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	intron	16931378	16931517	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	CDS	16931518	16931586	1	+	0	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	exon	16931518	16931586	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	intron	16931587	16931740	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	CDS	16931741	16931855	1	+	0	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	exon	16931741	16931855	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	intron	16931856	16932130	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	CDS	16932131	16932417	1	+	2	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	exon	16932131	16932417	.	+	.	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
Ledus.S3	AUGUSTUS	stop_codon	16932418	16932420	.	+	0	transcript_id "Ledus.S3G214100.t1"; gene_id "Ledus.S3G214100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7497.t1 is derived from g12168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3455036	3457440	.	+	.	Ledus.S5G027500
Ledus.S5	AUGUSTUS	transcript	3455036	3457440	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	start_codon	3455036	3455038	.	+	0	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	CDS	3455036	3455164	0.84	+	0	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	exon	3455036	3455164	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	intron	3455165	3455246	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	CDS	3455247	3455342	1	+	0	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	exon	3455247	3455342	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	intron	3455343	3455434	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	CDS	3455435	3455538	1	+	0	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	exon	3455435	3455538	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	intron	3455539	3455643	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	CDS	3455644	3455738	1	+	1	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	exon	3455644	3455738	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	intron	3455739	3455824	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	CDS	3455825	3455914	1	+	2	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	exon	3455825	3455914	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	intron	3455915	3455985	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	CDS	3455986	3456108	1	+	2	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	exon	3455986	3456108	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	intron	3456109	3456241	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	CDS	3456242	3456330	1	+	2	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	exon	3456242	3456330	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	intron	3456331	3456509	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	CDS	3456510	3456615	0.99	+	0	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	exon	3456510	3456615	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	intron	3456616	3456703	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	CDS	3456704	3456801	0.93	+	2	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	exon	3456704	3456801	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	intron	3456802	3456890	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	CDS	3456891	3457160	1	+	0	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	exon	3456891	3457160	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	intron	3457161	3457248	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	CDS	3457249	3457332	1	+	0	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	exon	3457249	3457332	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	intron	3457333	3457425	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	CDS	3457426	3457440	1	+	0	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	exon	3457426	3457440	.	+	.	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
Ledus.S5	AUGUSTUS	stop_codon	3457441	3457443	.	+	0	transcript_id "Ledus.S5G027500.t1"; gene_id "Ledus.S5G027500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5130.t1 is derived from g2569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21879867	21883782	.	-	.	Ledus.S1G255100
Ledus.S1	AUGUSTUS	transcript	21879867	21883782	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	stop_codon	21879864	21879866	.	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21879867	21879974	1	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21879867	21879974	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21879975	21880048	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21880049	21880179	1	-	2	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21880049	21880179	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21880180	21880288	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21880289	21880379	0.99	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21880289	21880379	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21880380	21880527	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21880528	21880611	0.99	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21880528	21880611	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21880612	21880822	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21880823	21880829	0.49	-	1	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21880823	21880829	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21880830	21881026	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21881027	21881043	0.49	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21881027	21881043	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21881044	21881270	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21881271	21881417	0.98	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21881271	21881417	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21881418	21881518	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21881519	21881672	0.96	-	1	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21881519	21881672	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21881673	21881803	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21881804	21881859	1	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21881804	21881859	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21881860	21882224	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21882225	21882323	1	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21882225	21882323	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21882324	21882485	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21882486	21882671	0.99	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21882486	21882671	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21882672	21882774	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21882775	21882918	0.87	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21882775	21882918	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21882919	21883026	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21883027	21883089	0.85	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21883027	21883089	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21883090	21883190	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21883191	21883274	1	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21883191	21883274	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21883275	21883448	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21883449	21883600	0.92	-	2	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21883449	21883600	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	intron	21883601	21883709	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	CDS	21883710	21883782	0.85	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	exon	21883710	21883782	.	-	.	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
Ledus.S1	AUGUSTUS	start_codon	21883780	21883782	.	-	0	transcript_id "Ledus.S1G255100.t1"; gene_id "Ledus.S1G255100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7970.t1 is derived from g12641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8284909	8286009	.	+	.	Ledus.S5G074800
Ledus.S5	AUGUSTUS	transcript	8284909	8286009	.	+	.	transcript_id "Ledus.S5G074800.t1"; gene_id "Ledus.S5G074800"
Ledus.S5	AUGUSTUS	start_codon	8284909	8284911	.	+	0	transcript_id "Ledus.S5G074800.t1"; gene_id "Ledus.S5G074800"
Ledus.S5	AUGUSTUS	CDS	8284909	8286009	0.95	+	0	transcript_id "Ledus.S5G074800.t1"; gene_id "Ledus.S5G074800"
Ledus.S5	AUGUSTUS	exon	8284909	8286009	.	+	.	transcript_id "Ledus.S5G074800.t1"; gene_id "Ledus.S5G074800"
Ledus.S5	AUGUSTUS	stop_codon	8286010	8286012	.	+	0	transcript_id "Ledus.S5G074800.t1"; gene_id "Ledus.S5G074800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4598.t1 is derived from g2035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18016929	18020376	.	+	.	Ledus.S1G201900
Ledus.S1	AUGUSTUS	transcript	18016929	18020376	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	start_codon	18016929	18016931	.	+	0	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	CDS	18016929	18017354	0.63	+	0	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	exon	18016929	18017354	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	intron	18017355	18017465	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	CDS	18017466	18017741	0.94	+	0	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	exon	18017466	18017741	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	intron	18017742	18017865	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	CDS	18017866	18018189	0.72	+	0	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	exon	18017866	18018189	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	intron	18018190	18018311	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	CDS	18018312	18018503	0.93	+	0	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	exon	18018312	18018503	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	intron	18018504	18018591	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	CDS	18018592	18018747	1	+	0	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	exon	18018592	18018747	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	intron	18018748	18018857	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	CDS	18018858	18019459	1	+	0	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	exon	18018858	18019459	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	intron	18019460	18019550	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	CDS	18019551	18019711	1	+	1	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	exon	18019551	18019711	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	intron	18019712	18019819	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	CDS	18019820	18020109	0.99	+	2	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	exon	18019820	18020109	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	intron	18020110	18020325	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	CDS	18020326	18020376	0.96	+	0	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	exon	18020326	18020376	.	+	.	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
Ledus.S1	AUGUSTUS	stop_codon	18020377	18020379	.	+	0	transcript_id "Ledus.S1G201900.t1"; gene_id "Ledus.S1G201900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3885.t1 is derived from g1321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13383518	13383793	.	+	.	Ledus.S1G130600
Ledus.S1	AUGUSTUS	transcript	13383518	13383793	.	+	.	transcript_id "Ledus.S1G130600.t1"; gene_id "Ledus.S1G130600"
Ledus.S1	AUGUSTUS	start_codon	13383518	13383520	.	+	0	transcript_id "Ledus.S1G130600.t1"; gene_id "Ledus.S1G130600"
Ledus.S1	AUGUSTUS	CDS	13383518	13383793	0.56	+	0	transcript_id "Ledus.S1G130600.t1"; gene_id "Ledus.S1G130600"
Ledus.S1	AUGUSTUS	exon	13383518	13383793	.	+	.	transcript_id "Ledus.S1G130600.t1"; gene_id "Ledus.S1G130600"
Ledus.S1	AUGUSTUS	stop_codon	13383794	13383796	.	+	0	transcript_id "Ledus.S1G130600.t1"; gene_id "Ledus.S1G130600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9751.t1 is derived from g10781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9573733	9578717	.	+	.	Ledus.S3G122800
Ledus.S3	AUGUSTUS	transcript	9573733	9578717	.	+	.	transcript_id "Ledus.S3G122800.t1"; gene_id "Ledus.S3G122800"
Ledus.S3	AUGUSTUS	start_codon	9573733	9573735	.	+	0	transcript_id "Ledus.S3G122800.t1"; gene_id "Ledus.S3G122800"
Ledus.S3	AUGUSTUS	CDS	9573733	9574488	0.75	+	0	transcript_id "Ledus.S3G122800.t1"; gene_id "Ledus.S3G122800"
Ledus.S3	AUGUSTUS	exon	9573733	9574488	.	+	.	transcript_id "Ledus.S3G122800.t1"; gene_id "Ledus.S3G122800"
Ledus.S3	AUGUSTUS	intron	9574489	9574719	.	+	.	transcript_id "Ledus.S3G122800.t1"; gene_id "Ledus.S3G122800"
Ledus.S3	AUGUSTUS	CDS	9574720	9578361	0.85	+	0	transcript_id "Ledus.S3G122800.t1"; gene_id "Ledus.S3G122800"
Ledus.S3	AUGUSTUS	exon	9574720	9578361	.	+	.	transcript_id "Ledus.S3G122800.t1"; gene_id "Ledus.S3G122800"
Ledus.S3	AUGUSTUS	intron	9578362	9578702	.	+	.	transcript_id "Ledus.S3G122800.t1"; gene_id "Ledus.S3G122800"
Ledus.S3	AUGUSTUS	CDS	9578703	9578717	0.38	+	0	transcript_id "Ledus.S3G122800.t1"; gene_id "Ledus.S3G122800"
Ledus.S3	AUGUSTUS	exon	9578703	9578717	.	+	.	transcript_id "Ledus.S3G122800.t1"; gene_id "Ledus.S3G122800"
Ledus.S3	AUGUSTUS	stop_codon	9578718	9578720	.	+	0	transcript_id "Ledus.S3G122800.t1"; gene_id "Ledus.S3G122800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9049.t1 is derived from g10079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4173810	4175643	.	-	.	Ledus.S3G052600
Ledus.S3	AUGUSTUS	transcript	4173810	4175643	.	-	.	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	stop_codon	4173807	4173809	.	-	0	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	CDS	4173810	4174031	1	-	0	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	exon	4173810	4174031	.	-	.	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	intron	4174032	4174113	.	-	.	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	CDS	4174114	4174359	1	-	0	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	exon	4174114	4174359	.	-	.	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	intron	4174360	4174458	.	-	.	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	CDS	4174459	4174592	1	-	2	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	exon	4174459	4174592	.	-	.	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	intron	4174593	4174665	.	-	.	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	CDS	4174666	4174744	1	-	0	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	exon	4174666	4174744	.	-	.	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	intron	4174745	4174846	.	-	.	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	CDS	4174847	4175444	0.42	-	1	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	exon	4174847	4175444	.	-	.	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	intron	4175445	4175530	.	-	.	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	CDS	4175531	4175643	0.35	-	0	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	exon	4175531	4175643	.	-	.	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
Ledus.S3	AUGUSTUS	start_codon	4175641	4175643	.	-	0	transcript_id "Ledus.S3G052600.t1"; gene_id "Ledus.S3G052600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5.t1 is derived from g11868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C46	AUGUSTUS	gene	18755	21038	.	-	.	Ledus.C46G000100
Ledus.C46	AUGUSTUS	transcript	18755	21038	.	-	.	transcript_id "Ledus.C46G000100.t1"; gene_id "Ledus.C46G000100"
Ledus.C46	AUGUSTUS	stop_codon	18752	18754	.	-	0	transcript_id "Ledus.C46G000100.t1"; gene_id "Ledus.C46G000100"
Ledus.C46	AUGUSTUS	CDS	18755	19046	0.51	-	1	transcript_id "Ledus.C46G000100.t1"; gene_id "Ledus.C46G000100"
Ledus.C46	AUGUSTUS	exon	18755	19046	.	-	.	transcript_id "Ledus.C46G000100.t1"; gene_id "Ledus.C46G000100"
Ledus.C46	AUGUSTUS	intron	19047	19127	.	-	.	transcript_id "Ledus.C46G000100.t1"; gene_id "Ledus.C46G000100"
Ledus.C46	AUGUSTUS	CDS	19128	20128	0.25	-	0	transcript_id "Ledus.C46G000100.t1"; gene_id "Ledus.C46G000100"
Ledus.C46	AUGUSTUS	exon	19128	20128	.	-	.	transcript_id "Ledus.C46G000100.t1"; gene_id "Ledus.C46G000100"
Ledus.C46	AUGUSTUS	intron	20129	20666	.	-	.	transcript_id "Ledus.C46G000100.t1"; gene_id "Ledus.C46G000100"
Ledus.C46	AUGUSTUS	CDS	20667	21038	0.42	-	0	transcript_id "Ledus.C46G000100.t1"; gene_id "Ledus.C46G000100"
Ledus.C46	AUGUSTUS	exon	20667	21038	.	-	.	transcript_id "Ledus.C46G000100.t1"; gene_id "Ledus.C46G000100"
Ledus.C46	AUGUSTUS	start_codon	21036	21038	.	-	0	transcript_id "Ledus.C46G000100.t1"; gene_id "Ledus.C46G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4810.t1 is derived from g2248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19908528	19910406	.	-	.	Ledus.S1G223100
Ledus.S1	AUGUSTUS	transcript	19908528	19910406	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	stop_codon	19908525	19908527	.	-	0	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	CDS	19908528	19908644	1	-	0	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	exon	19908528	19908644	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	intron	19908645	19908741	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	CDS	19908742	19908849	1	-	0	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	exon	19908742	19908849	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	intron	19908850	19908928	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	CDS	19908929	19909172	1	-	1	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	exon	19908929	19909172	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	intron	19909173	19909276	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	CDS	19909277	19909512	1	-	0	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	exon	19909277	19909512	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	intron	19909513	19909601	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	CDS	19909602	19909792	1	-	2	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	exon	19909602	19909792	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	intron	19909793	19909874	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	CDS	19909875	19910112	1	-	0	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	exon	19909875	19910112	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	intron	19910113	19910187	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	CDS	19910188	19910406	0.96	-	0	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	exon	19910188	19910406	.	-	.	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
Ledus.S1	AUGUSTUS	start_codon	19910404	19910406	.	-	0	transcript_id "Ledus.S1G223100.t1"; gene_id "Ledus.S1G223100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4948.t1 is derived from g2386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20833649	20835061	.	-	.	Ledus.S1G236900
Ledus.S1	AUGUSTUS	transcript	20833649	20835061	.	-	.	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	stop_codon	20833646	20833648	.	-	0	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	CDS	20833649	20833705	1	-	0	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	exon	20833649	20833705	.	-	.	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	intron	20833706	20833807	.	-	.	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	CDS	20833808	20833892	1	-	1	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	exon	20833808	20833892	.	-	.	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	intron	20833893	20834053	.	-	.	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	CDS	20834054	20834131	1	-	1	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	exon	20834054	20834131	.	-	.	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	intron	20834132	20834226	.	-	.	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	CDS	20834227	20834374	1	-	2	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	exon	20834227	20834374	.	-	.	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	intron	20834375	20834453	.	-	.	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	CDS	20834454	20834613	1	-	0	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	exon	20834454	20834613	.	-	.	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	intron	20834614	20834989	.	-	.	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	CDS	20834990	20835061	0.86	-	0	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	exon	20834990	20835061	.	-	.	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
Ledus.S1	AUGUSTUS	start_codon	20835059	20835061	.	-	0	transcript_id "Ledus.S1G236900.t1"; gene_id "Ledus.S1G236900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2218.t1 is derived from g9081.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16140651	16141628	.	+	.	Ledus.S2G210000
Ledus.S2	AUGUSTUS	transcript	16140651	16141628	.	+	.	transcript_id "Ledus.S2G210000.t1"; gene_id "Ledus.S2G210000"
Ledus.S2	AUGUSTUS	start_codon	16140651	16140653	.	+	0	transcript_id "Ledus.S2G210000.t1"; gene_id "Ledus.S2G210000"
Ledus.S2	AUGUSTUS	CDS	16140651	16140716	0.59	+	0	transcript_id "Ledus.S2G210000.t1"; gene_id "Ledus.S2G210000"
Ledus.S2	AUGUSTUS	exon	16140651	16140716	.	+	.	transcript_id "Ledus.S2G210000.t1"; gene_id "Ledus.S2G210000"
Ledus.S2	AUGUSTUS	intron	16140717	16141059	.	+	.	transcript_id "Ledus.S2G210000.t1"; gene_id "Ledus.S2G210000"
Ledus.S2	AUGUSTUS	CDS	16141060	16141112	0.9	+	0	transcript_id "Ledus.S2G210000.t1"; gene_id "Ledus.S2G210000"
Ledus.S2	AUGUSTUS	exon	16141060	16141112	.	+	.	transcript_id "Ledus.S2G210000.t1"; gene_id "Ledus.S2G210000"
Ledus.S2	AUGUSTUS	intron	16141113	16141309	.	+	.	transcript_id "Ledus.S2G210000.t1"; gene_id "Ledus.S2G210000"
Ledus.S2	AUGUSTUS	CDS	16141310	16141628	0.96	+	1	transcript_id "Ledus.S2G210000.t1"; gene_id "Ledus.S2G210000"
Ledus.S2	AUGUSTUS	exon	16141310	16141628	.	+	.	transcript_id "Ledus.S2G210000.t1"; gene_id "Ledus.S2G210000"
Ledus.S2	AUGUSTUS	stop_codon	16141629	16141631	.	+	0	transcript_id "Ledus.S2G210000.t1"; gene_id "Ledus.S2G210000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7711.t1 is derived from g12382.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5338165	5339303	.	-	.	Ledus.S5G048900
Ledus.S5	AUGUSTUS	transcript	5338165	5339303	.	-	.	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	stop_codon	5338162	5338164	.	-	0	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	CDS	5338165	5338295	1	-	2	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	exon	5338165	5338295	.	-	.	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	intron	5338296	5338386	.	-	.	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	CDS	5338387	5338494	1	-	2	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	exon	5338387	5338494	.	-	.	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	intron	5338495	5338582	.	-	.	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	CDS	5338583	5338769	1	-	0	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	exon	5338583	5338769	.	-	.	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	intron	5338770	5339075	.	-	.	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	CDS	5339076	5339303	0.64	-	0	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	exon	5339076	5339303	.	-	.	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
Ledus.S5	AUGUSTUS	start_codon	5339301	5339303	.	-	0	transcript_id "Ledus.S5G048900.t1"; gene_id "Ledus.S5G048900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4314.t1 is derived from g1750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16160088	16160875	.	-	.	Ledus.S1G173500
Ledus.S1	AUGUSTUS	transcript	16160088	16160875	.	-	.	transcript_id "Ledus.S1G173500.t1"; gene_id "Ledus.S1G173500"
Ledus.S1	AUGUSTUS	stop_codon	16160085	16160087	.	-	0	transcript_id "Ledus.S1G173500.t1"; gene_id "Ledus.S1G173500"
Ledus.S1	AUGUSTUS	CDS	16160088	16160354	0.72	-	0	transcript_id "Ledus.S1G173500.t1"; gene_id "Ledus.S1G173500"
Ledus.S1	AUGUSTUS	exon	16160088	16160354	.	-	.	transcript_id "Ledus.S1G173500.t1"; gene_id "Ledus.S1G173500"
Ledus.S1	AUGUSTUS	intron	16160355	16160444	.	-	.	transcript_id "Ledus.S1G173500.t1"; gene_id "Ledus.S1G173500"
Ledus.S1	AUGUSTUS	CDS	16160445	16160716	0.37	-	2	transcript_id "Ledus.S1G173500.t1"; gene_id "Ledus.S1G173500"
Ledus.S1	AUGUSTUS	exon	16160445	16160716	.	-	.	transcript_id "Ledus.S1G173500.t1"; gene_id "Ledus.S1G173500"
Ledus.S1	AUGUSTUS	intron	16160717	16160820	.	-	.	transcript_id "Ledus.S1G173500.t1"; gene_id "Ledus.S1G173500"
Ledus.S1	AUGUSTUS	CDS	16160821	16160875	0.59	-	0	transcript_id "Ledus.S1G173500.t1"; gene_id "Ledus.S1G173500"
Ledus.S1	AUGUSTUS	exon	16160821	16160875	.	-	.	transcript_id "Ledus.S1G173500.t1"; gene_id "Ledus.S1G173500"
Ledus.S1	AUGUSTUS	start_codon	16160873	16160875	.	-	0	transcript_id "Ledus.S1G173500.t1"; gene_id "Ledus.S1G173500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2671.t1 is derived from g104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1577098	1580092	.	+	.	Ledus.S1G009200
Ledus.S1	AUGUSTUS	transcript	1577098	1580092	.	+	.	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	start_codon	1577098	1577100	.	+	0	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	CDS	1577098	1577304	0.81	+	0	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	exon	1577098	1577304	.	+	.	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	intron	1577305	1577397	.	+	.	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	CDS	1577398	1577635	0.82	+	0	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	exon	1577398	1577635	.	+	.	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	intron	1577636	1577833	.	+	.	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	CDS	1577834	1577878	0.95	+	2	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	exon	1577834	1577878	.	+	.	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	intron	1577879	1578045	.	+	.	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	CDS	1578046	1578280	0.98	+	2	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	exon	1578046	1578280	.	+	.	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	intron	1578281	1578410	.	+	.	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	CDS	1578411	1578698	1	+	1	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	exon	1578411	1578698	.	+	.	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	intron	1578699	1578837	.	+	.	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	CDS	1578838	1580092	0.98	+	1	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	exon	1578838	1580092	.	+	.	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
Ledus.S1	AUGUSTUS	stop_codon	1580093	1580095	.	+	0	transcript_id "Ledus.S1G009200.t1"; gene_id "Ledus.S1G009200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7530.t1 is derived from g12201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3636938	3638959	.	+	.	Ledus.S5G030800
Ledus.S5	AUGUSTUS	transcript	3638357	3638959	.	+	.	transcript_id "Ledus.S5G030800.t1"; gene_id "Ledus.S5G030800"
Ledus.S5	AUGUSTUS	start_codon	3638357	3638359	.	+	0	transcript_id "Ledus.S5G030800.t1"; gene_id "Ledus.S5G030800"
Ledus.S5	AUGUSTUS	CDS	3638357	3638959	0.92	+	0	transcript_id "Ledus.S5G030800.t1"; gene_id "Ledus.S5G030800"
Ledus.S5	AUGUSTUS	exon	3638357	3638959	.	+	.	transcript_id "Ledus.S5G030800.t1"; gene_id "Ledus.S5G030800"
Ledus.S5	AUGUSTUS	stop_codon	3638960	3638962	.	+	0	transcript_id "Ledus.S5G030800.t1"; gene_id "Ledus.S5G030800"
Ledus.S5	AUGUSTUS	transcript	3636938	3638959	.	+	.	transcript_id "Ledus.S5G030800.t2"; gene_id "Ledus.S5G030800"
Ledus.S5	AUGUSTUS	start_codon	3636938	3636940	.	+	0	transcript_id "Ledus.S5G030800.t2"; gene_id "Ledus.S5G030800"
Ledus.S5	AUGUSTUS	CDS	3636938	3638959	0.85	+	0	transcript_id "Ledus.S5G030800.t2"; gene_id "Ledus.S5G030800"
Ledus.S5	AUGUSTUS	exon	3636938	3638959	.	+	.	transcript_id "Ledus.S5G030800.t2"; gene_id "Ledus.S5G030800"
Ledus.S5	AUGUSTUS	stop_codon	3638960	3638962	.	+	0	transcript_id "Ledus.S5G030800.t2"; gene_id "Ledus.S5G030800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9610.t1 is derived from g10640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8388227	8389814	.	-	.	Ledus.S3G108700
Ledus.S3	AUGUSTUS	transcript	8388227	8389814	.	-	.	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	stop_codon	8388224	8388226	.	-	0	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	CDS	8388227	8389064	0.94	-	1	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	exon	8388227	8389064	.	-	.	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	intron	8389065	8389156	.	-	.	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	CDS	8389157	8389473	1	-	0	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	exon	8389157	8389473	.	-	.	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	intron	8389474	8389576	.	-	.	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	CDS	8389577	8389719	0.5	-	2	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	exon	8389577	8389719	.	-	.	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	intron	8389720	8389807	.	-	.	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	CDS	8389808	8389814	0.53	-	0	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	exon	8389808	8389814	.	-	.	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
Ledus.S3	AUGUSTUS	start_codon	8389812	8389814	.	-	0	transcript_id "Ledus.S3G108700.t1"; gene_id "Ledus.S3G108700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8118.t1 is derived from g12789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9210676	9212559	.	+	.	Ledus.S5G089600
Ledus.S5	AUGUSTUS	transcript	9210676	9212559	.	+	.	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	start_codon	9210676	9210678	.	+	0	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	CDS	9210676	9210700	0.69	+	0	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	exon	9210676	9210700	.	+	.	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	intron	9210701	9210791	.	+	.	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	CDS	9210792	9211049	1	+	2	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	exon	9210792	9211049	.	+	.	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	intron	9211050	9211144	.	+	.	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	CDS	9211145	9211443	1	+	2	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	exon	9211145	9211443	.	+	.	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	intron	9211444	9211524	.	+	.	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	CDS	9211525	9212559	0.97	+	0	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	exon	9211525	9212559	.	+	.	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
Ledus.S5	AUGUSTUS	stop_codon	9212560	9212562	.	+	0	transcript_id "Ledus.S5G089600.t1"; gene_id "Ledus.S5G089600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8150.t1 is derived from g12821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9393120	9394059	.	+	.	Ledus.S5G092800
Ledus.S5	AUGUSTUS	transcript	9393120	9394059	.	+	.	transcript_id "Ledus.S5G092800.t1"; gene_id "Ledus.S5G092800"
Ledus.S5	AUGUSTUS	start_codon	9393120	9393122	.	+	0	transcript_id "Ledus.S5G092800.t1"; gene_id "Ledus.S5G092800"
Ledus.S5	AUGUSTUS	CDS	9393120	9393948	0.23	+	0	transcript_id "Ledus.S5G092800.t1"; gene_id "Ledus.S5G092800"
Ledus.S5	AUGUSTUS	exon	9393120	9393948	.	+	.	transcript_id "Ledus.S5G092800.t1"; gene_id "Ledus.S5G092800"
Ledus.S5	AUGUSTUS	intron	9393949	9394021	.	+	.	transcript_id "Ledus.S5G092800.t1"; gene_id "Ledus.S5G092800"
Ledus.S5	AUGUSTUS	CDS	9394022	9394059	0.39	+	2	transcript_id "Ledus.S5G092800.t1"; gene_id "Ledus.S5G092800"
Ledus.S5	AUGUSTUS	exon	9394022	9394059	.	+	.	transcript_id "Ledus.S5G092800.t1"; gene_id "Ledus.S5G092800"
Ledus.S5	AUGUSTUS	stop_codon	9394060	9394062	.	+	0	transcript_id "Ledus.S5G092800.t1"; gene_id "Ledus.S5G092800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8317.t1 is derived from g12989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10709054	10710105	.	+	.	Ledus.S5G109500
Ledus.S5	AUGUSTUS	transcript	10709054	10710105	.	+	.	transcript_id "Ledus.S5G109500.t1"; gene_id "Ledus.S5G109500"
Ledus.S5	AUGUSTUS	start_codon	10709054	10709056	.	+	0	transcript_id "Ledus.S5G109500.t1"; gene_id "Ledus.S5G109500"
Ledus.S5	AUGUSTUS	CDS	10709054	10709201	0.38	+	0	transcript_id "Ledus.S5G109500.t1"; gene_id "Ledus.S5G109500"
Ledus.S5	AUGUSTUS	exon	10709054	10709201	.	+	.	transcript_id "Ledus.S5G109500.t1"; gene_id "Ledus.S5G109500"
Ledus.S5	AUGUSTUS	intron	10709202	10709280	.	+	.	transcript_id "Ledus.S5G109500.t1"; gene_id "Ledus.S5G109500"
Ledus.S5	AUGUSTUS	CDS	10709281	10709352	0.62	+	2	transcript_id "Ledus.S5G109500.t1"; gene_id "Ledus.S5G109500"
Ledus.S5	AUGUSTUS	exon	10709281	10709352	.	+	.	transcript_id "Ledus.S5G109500.t1"; gene_id "Ledus.S5G109500"
Ledus.S5	AUGUSTUS	intron	10709353	10709485	.	+	.	transcript_id "Ledus.S5G109500.t1"; gene_id "Ledus.S5G109500"
Ledus.S5	AUGUSTUS	CDS	10709486	10710105	0.99	+	2	transcript_id "Ledus.S5G109500.t1"; gene_id "Ledus.S5G109500"
Ledus.S5	AUGUSTUS	exon	10709486	10710105	.	+	.	transcript_id "Ledus.S5G109500.t1"; gene_id "Ledus.S5G109500"
Ledus.S5	AUGUSTUS	stop_codon	10710106	10710108	.	+	0	transcript_id "Ledus.S5G109500.t1"; gene_id "Ledus.S5G109500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10881.t1 is derived from g4499.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	299600	301922	.	+	.	Ledus.S4G003700
Ledus.S4	AUGUSTUS	transcript	299600	301922	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	start_codon	299600	299602	.	+	0	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	CDS	299600	299719	0.58	+	0	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	exon	299600	299719	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	intron	299720	300043	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	CDS	300044	300107	0.81	+	0	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	exon	300044	300107	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	intron	300108	300189	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	CDS	300190	300209	0.8	+	2	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	exon	300190	300209	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	intron	300210	300271	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	CDS	300272	300654	0.78	+	0	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	exon	300272	300654	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	intron	300655	300761	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	CDS	300762	300861	0.98	+	1	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	exon	300762	300861	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	intron	300862	300949	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	CDS	300950	301030	1	+	0	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	exon	300950	301030	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	intron	301031	301132	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	CDS	301133	301237	1	+	0	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	exon	301133	301237	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	intron	301238	301407	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	CDS	301408	301623	1	+	0	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	exon	301408	301623	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	intron	301624	301814	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	CDS	301815	301922	0.64	+	0	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	exon	301815	301922	.	+	.	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
Ledus.S4	AUGUSTUS	stop_codon	301923	301925	.	+	0	transcript_id "Ledus.S4G003700.t1"; gene_id "Ledus.S4G003700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5258.t1 is derived from g2697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22766183	22767395	.	+	.	Ledus.S1G267900
Ledus.S1	AUGUSTUS	transcript	22766183	22767395	.	+	.	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	start_codon	22766183	22766185	.	+	0	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	CDS	22766183	22766389	0.92	+	0	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	exon	22766183	22766389	.	+	.	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	intron	22766390	22766473	.	+	.	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	CDS	22766474	22766659	1	+	0	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	exon	22766474	22766659	.	+	.	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	intron	22766660	22766746	.	+	.	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	CDS	22766747	22766906	1	+	0	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	exon	22766747	22766906	.	+	.	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	intron	22766907	22766985	.	+	.	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	CDS	22766986	22767395	0.97	+	2	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	exon	22766986	22767395	.	+	.	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
Ledus.S1	AUGUSTUS	stop_codon	22767396	22767398	.	+	0	transcript_id "Ledus.S1G267900.t1"; gene_id "Ledus.S1G267900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9121.t1 is derived from g10151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4684913	4689458	.	-	.	Ledus.S3G059800
Ledus.S3	AUGUSTUS	transcript	4684913	4689458	.	-	.	transcript_id "Ledus.S3G059800.t1"; gene_id "Ledus.S3G059800"
Ledus.S3	AUGUSTUS	stop_codon	4684910	4684912	.	-	0	transcript_id "Ledus.S3G059800.t1"; gene_id "Ledus.S3G059800"
Ledus.S3	AUGUSTUS	CDS	4684913	4688836	0.64	-	0	transcript_id "Ledus.S3G059800.t1"; gene_id "Ledus.S3G059800"
Ledus.S3	AUGUSTUS	exon	4684913	4688836	.	-	.	transcript_id "Ledus.S3G059800.t1"; gene_id "Ledus.S3G059800"
Ledus.S3	AUGUSTUS	intron	4688837	4688917	.	-	.	transcript_id "Ledus.S3G059800.t1"; gene_id "Ledus.S3G059800"
Ledus.S3	AUGUSTUS	CDS	4688918	4689332	0.99	-	1	transcript_id "Ledus.S3G059800.t1"; gene_id "Ledus.S3G059800"
Ledus.S3	AUGUSTUS	exon	4688918	4689332	.	-	.	transcript_id "Ledus.S3G059800.t1"; gene_id "Ledus.S3G059800"
Ledus.S3	AUGUSTUS	intron	4689333	4689417	.	-	.	transcript_id "Ledus.S3G059800.t1"; gene_id "Ledus.S3G059800"
Ledus.S3	AUGUSTUS	CDS	4689418	4689458	0.54	-	0	transcript_id "Ledus.S3G059800.t1"; gene_id "Ledus.S3G059800"
Ledus.S3	AUGUSTUS	exon	4689418	4689458	.	-	.	transcript_id "Ledus.S3G059800.t1"; gene_id "Ledus.S3G059800"
Ledus.S3	AUGUSTUS	start_codon	4689456	4689458	.	-	0	transcript_id "Ledus.S3G059800.t1"; gene_id "Ledus.S3G059800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3764.t1 is derived from g1200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11774752	11781022	.	-	.	Ledus.S1G118500
Ledus.S1	AUGUSTUS	transcript	11774752	11781022	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	stop_codon	11774749	11774751	.	-	0	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	CDS	11774752	11777378	0.99	-	2	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	exon	11774752	11777378	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	intron	11777379	11777479	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	CDS	11777480	11777561	1	-	0	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	exon	11777480	11777561	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	intron	11777562	11777777	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	CDS	11777778	11778188	0.99	-	0	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	exon	11777778	11778188	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	intron	11778189	11778478	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	CDS	11778479	11778816	1	-	2	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	exon	11778479	11778816	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	intron	11778817	11779017	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	CDS	11779018	11779126	1	-	0	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	exon	11779018	11779126	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	intron	11779127	11779258	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	CDS	11779259	11779458	1	-	2	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	exon	11779259	11779458	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	intron	11779459	11779723	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	CDS	11779724	11780046	1	-	1	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	exon	11779724	11780046	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	intron	11780047	11780198	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	CDS	11780199	11780285	1	-	1	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	exon	11780199	11780285	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	intron	11780286	11780628	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	CDS	11780629	11780727	1	-	1	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	exon	11780629	11780727	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	intron	11780728	11780948	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	CDS	11780949	11781022	1	-	0	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	exon	11780949	11781022	.	-	.	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
Ledus.S1	AUGUSTUS	start_codon	11781020	11781022	.	-	0	transcript_id "Ledus.S1G118500.t1"; gene_id "Ledus.S1G118500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12137.t1 is derived from g5756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9770695	9770988	.	-	.	Ledus.S4G129300
Ledus.S4	AUGUSTUS	transcript	9770695	9770988	.	-	.	transcript_id "Ledus.S4G129300.t1"; gene_id "Ledus.S4G129300"
Ledus.S4	AUGUSTUS	stop_codon	9770692	9770694	.	-	0	transcript_id "Ledus.S4G129300.t1"; gene_id "Ledus.S4G129300"
Ledus.S4	AUGUSTUS	CDS	9770695	9770988	0.66	-	0	transcript_id "Ledus.S4G129300.t1"; gene_id "Ledus.S4G129300"
Ledus.S4	AUGUSTUS	exon	9770695	9770988	.	-	.	transcript_id "Ledus.S4G129300.t1"; gene_id "Ledus.S4G129300"
Ledus.S4	AUGUSTUS	start_codon	9770986	9770988	.	-	0	transcript_id "Ledus.S4G129300.t1"; gene_id "Ledus.S4G129300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg214.t1 is derived from g7075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	936613	937039	.	+	.	Ledus.S2G009600
Ledus.S2	AUGUSTUS	transcript	936613	937039	.	+	.	transcript_id "Ledus.S2G009600.t1"; gene_id "Ledus.S2G009600"
Ledus.S2	AUGUSTUS	start_codon	936613	936615	.	+	0	transcript_id "Ledus.S2G009600.t1"; gene_id "Ledus.S2G009600"
Ledus.S2	AUGUSTUS	CDS	936613	936895	1	+	0	transcript_id "Ledus.S2G009600.t1"; gene_id "Ledus.S2G009600"
Ledus.S2	AUGUSTUS	exon	936613	936895	.	+	.	transcript_id "Ledus.S2G009600.t1"; gene_id "Ledus.S2G009600"
Ledus.S2	AUGUSTUS	intron	936896	936962	.	+	.	transcript_id "Ledus.S2G009600.t1"; gene_id "Ledus.S2G009600"
Ledus.S2	AUGUSTUS	CDS	936963	937039	1	+	2	transcript_id "Ledus.S2G009600.t1"; gene_id "Ledus.S2G009600"
Ledus.S2	AUGUSTUS	exon	936963	937039	.	+	.	transcript_id "Ledus.S2G009600.t1"; gene_id "Ledus.S2G009600"
Ledus.S2	AUGUSTUS	stop_codon	937040	937042	.	+	0	transcript_id "Ledus.S2G009600.t1"; gene_id "Ledus.S2G009600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6064.t1 is derived from g3507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28798913	28802568	.	+	.	Ledus.S1G348500
Ledus.S1	AUGUSTUS	transcript	28798913	28802568	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	start_codon	28798913	28798915	.	+	0	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28798913	28798935	0.31	+	0	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28798913	28798935	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28798936	28799182	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28799183	28799208	0.72	+	1	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28799183	28799208	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28799209	28799488	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28799489	28799592	0.99	+	2	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28799489	28799592	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28799593	28799780	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28799781	28799864	1	+	0	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28799781	28799864	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28799865	28799983	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28799984	28800120	1	+	0	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28799984	28800120	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28800121	28800319	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28800320	28800392	0.99	+	1	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28800320	28800392	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28800393	28800594	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28800595	28800678	0.95	+	0	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28800595	28800678	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28800679	28800795	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28800796	28800888	1	+	0	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28800796	28800888	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28800889	28800999	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28801000	28801070	1	+	0	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28801000	28801070	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28801071	28801192	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28801193	28801244	1	+	1	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28801193	28801244	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28801245	28801471	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28801472	28801529	0.99	+	0	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28801472	28801529	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28801530	28801641	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28801642	28801742	0.97	+	2	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28801642	28801742	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28801743	28801823	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28801824	28801978	1	+	0	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28801824	28801978	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28801979	28802095	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28802096	28802204	1	+	1	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28802096	28802204	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28802205	28802279	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28802280	28802336	1	+	0	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28802280	28802336	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	intron	28802337	28802415	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	CDS	28802416	28802568	0.89	+	0	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	exon	28802416	28802568	.	+	.	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
Ledus.S1	AUGUSTUS	stop_codon	28802569	28802571	.	+	0	transcript_id "Ledus.S1G348500.t1"; gene_id "Ledus.S1G348500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4650.t1 is derived from g2088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18689310	18690917	.	-	.	Ledus.S1G207100
Ledus.S1	AUGUSTUS	transcript	18689310	18690917	.	-	.	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	stop_codon	18689307	18689309	.	-	0	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	CDS	18689310	18689756	0.99	-	0	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	exon	18689310	18689756	.	-	.	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	intron	18689757	18689957	.	-	.	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	CDS	18689958	18690309	0.9	-	1	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	exon	18689958	18690309	.	-	.	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	intron	18690310	18690401	.	-	.	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	CDS	18690402	18690417	0.95	-	2	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	exon	18690402	18690417	.	-	.	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	intron	18690418	18690730	.	-	.	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	CDS	18690731	18690917	0.88	-	0	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	exon	18690731	18690917	.	-	.	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
Ledus.S1	AUGUSTUS	start_codon	18690915	18690917	.	-	0	transcript_id "Ledus.S1G207100.t1"; gene_id "Ledus.S1G207100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg995.t1 is derived from g7856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6535554	6537399	.	-	.	Ledus.S2G087700
Ledus.S2	AUGUSTUS	transcript	6535554	6537399	.	-	.	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	stop_codon	6535551	6535553	.	-	0	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	CDS	6535554	6536042	1	-	0	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	exon	6535554	6536042	.	-	.	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	intron	6536043	6536134	.	-	.	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	CDS	6536135	6536305	0.81	-	0	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	exon	6536135	6536305	.	-	.	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	intron	6536306	6536517	.	-	.	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	CDS	6536518	6536794	0.95	-	1	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	exon	6536518	6536794	.	-	.	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	intron	6536795	6536865	.	-	.	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	CDS	6536866	6537011	1	-	0	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	exon	6536866	6537011	.	-	.	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	intron	6537012	6537081	.	-	.	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	CDS	6537082	6537399	1	-	0	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	exon	6537082	6537399	.	-	.	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
Ledus.S2	AUGUSTUS	start_codon	6537397	6537399	.	-	0	transcript_id "Ledus.S2G087700.t1"; gene_id "Ledus.S2G087700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11710.t1 is derived from g5329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6173224	6173905	.	+	.	Ledus.S4G086600
Ledus.S4	AUGUSTUS	transcript	6173224	6173905	.	+	.	transcript_id "Ledus.S4G086600.t1"; gene_id "Ledus.S4G086600"
Ledus.S4	AUGUSTUS	start_codon	6173224	6173226	.	+	0	transcript_id "Ledus.S4G086600.t1"; gene_id "Ledus.S4G086600"
Ledus.S4	AUGUSTUS	CDS	6173224	6173474	1	+	0	transcript_id "Ledus.S4G086600.t1"; gene_id "Ledus.S4G086600"
Ledus.S4	AUGUSTUS	exon	6173224	6173474	.	+	.	transcript_id "Ledus.S4G086600.t1"; gene_id "Ledus.S4G086600"
Ledus.S4	AUGUSTUS	intron	6173475	6173562	.	+	.	transcript_id "Ledus.S4G086600.t1"; gene_id "Ledus.S4G086600"
Ledus.S4	AUGUSTUS	CDS	6173563	6173905	0.9	+	1	transcript_id "Ledus.S4G086600.t1"; gene_id "Ledus.S4G086600"
Ledus.S4	AUGUSTUS	exon	6173563	6173905	.	+	.	transcript_id "Ledus.S4G086600.t1"; gene_id "Ledus.S4G086600"
Ledus.S4	AUGUSTUS	stop_codon	6173906	6173908	.	+	0	transcript_id "Ledus.S4G086600.t1"; gene_id "Ledus.S4G086600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg159.t1 is derived from g7020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	398431	399273	.	+	.	Ledus.S2G004100
Ledus.S2	AUGUSTUS	transcript	398431	399273	.	+	.	transcript_id "Ledus.S2G004100.t1"; gene_id "Ledus.S2G004100"
Ledus.S2	AUGUSTUS	start_codon	398431	398433	.	+	0	transcript_id "Ledus.S2G004100.t1"; gene_id "Ledus.S2G004100"
Ledus.S2	AUGUSTUS	CDS	398431	399273	0.95	+	0	transcript_id "Ledus.S2G004100.t1"; gene_id "Ledus.S2G004100"
Ledus.S2	AUGUSTUS	exon	398431	399273	.	+	.	transcript_id "Ledus.S2G004100.t1"; gene_id "Ledus.S2G004100"
Ledus.S2	AUGUSTUS	stop_codon	399274	399276	.	+	0	transcript_id "Ledus.S2G004100.t1"; gene_id "Ledus.S2G004100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6055.t1 is derived from g3498.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28737873	28744335	.	-	.	Ledus.S1G347600
Ledus.S1	AUGUSTUS	transcript	28737873	28744335	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	stop_codon	28737870	28737872	.	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28737873	28738139	1	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28737873	28738139	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28738140	28738258	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28738259	28738513	0.98	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28738259	28738513	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28738514	28738625	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28738626	28738797	0.99	-	1	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28738626	28738797	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28738798	28738900	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28738901	28739128	0.99	-	1	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28738901	28739128	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28739129	28739227	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28739228	28739361	1	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28739228	28739361	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28739362	28739447	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28739448	28739531	1	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28739448	28739531	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28739532	28739627	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28739628	28739918	1	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28739628	28739918	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28739919	28739996	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28739997	28740329	1	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28739997	28740329	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28740330	28740454	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28740455	28740615	1	-	2	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28740455	28740615	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28740616	28740707	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28740708	28740833	1	-	2	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28740708	28740833	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28740834	28740964	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28740965	28741121	1	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28740965	28741121	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28741122	28741207	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28741208	28741311	1	-	2	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28741208	28741311	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28741312	28741404	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28741405	28741565	1	-	1	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28741405	28741565	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28741566	28741641	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28741642	28741958	1	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28741642	28741958	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28741959	28742049	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28742050	28742331	1	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28742050	28742331	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28742332	28742430	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28742431	28742823	1	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28742431	28742823	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28742824	28742903	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28742904	28742957	1	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28742904	28742957	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28742958	28743060	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28743061	28743297	1	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28743061	28743297	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28743298	28743385	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28743386	28743470	1	-	1	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28743386	28743470	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28743471	28743557	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28743558	28743646	1	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28743558	28743646	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28743647	28743734	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28743735	28743855	1	-	1	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28743735	28743855	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	intron	28743856	28743946	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	CDS	28743947	28744335	0.63	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	exon	28743947	28744335	.	-	.	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
Ledus.S1	AUGUSTUS	start_codon	28744333	28744335	.	-	0	transcript_id "Ledus.S1G347600.t1"; gene_id "Ledus.S1G347600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg462.t1 is derived from g7323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2727025	2729623	.	-	.	Ledus.S2G034400
Ledus.S2	AUGUSTUS	transcript	2727025	2729623	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	stop_codon	2727022	2727024	.	-	0	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2727025	2727187	1	-	1	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2727025	2727187	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	intron	2727188	2727294	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2727295	2727441	1	-	1	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2727295	2727441	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	intron	2727442	2727536	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2727537	2727658	1	-	0	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2727537	2727658	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	intron	2727659	2727774	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2727775	2727879	1	-	0	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2727775	2727879	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	intron	2727880	2727948	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2727949	2728060	1	-	1	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2727949	2728060	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	intron	2728061	2728136	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2728137	2728204	1	-	0	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2728137	2728204	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	intron	2728205	2728301	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2728302	2728451	1	-	0	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2728302	2728451	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	intron	2728452	2728539	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2728540	2728602	1	-	0	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2728540	2728602	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	intron	2728603	2728680	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2728681	2728806	1	-	0	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2728681	2728806	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	intron	2728807	2728886	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2728887	2728973	1	-	0	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2728887	2728973	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	intron	2728974	2729109	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2729110	2729288	1	-	2	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2729110	2729288	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	intron	2729289	2729401	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2729402	2729453	1	-	0	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2729402	2729453	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	intron	2729454	2729569	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	CDS	2729570	2729623	0.45	-	0	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	exon	2729570	2729623	.	-	.	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
Ledus.S2	AUGUSTUS	start_codon	2729621	2729623	.	-	0	transcript_id "Ledus.S2G034400.t1"; gene_id "Ledus.S2G034400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11790.t1 is derived from g5409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6803874	6804251	.	-	.	Ledus.S4G094600
Ledus.S4	AUGUSTUS	transcript	6803874	6804251	.	-	.	transcript_id "Ledus.S4G094600.t1"; gene_id "Ledus.S4G094600"
Ledus.S4	AUGUSTUS	stop_codon	6803871	6803873	.	-	0	transcript_id "Ledus.S4G094600.t1"; gene_id "Ledus.S4G094600"
Ledus.S4	AUGUSTUS	CDS	6803874	6804251	0.36	-	0	transcript_id "Ledus.S4G094600.t1"; gene_id "Ledus.S4G094600"
Ledus.S4	AUGUSTUS	exon	6803874	6804251	.	-	.	transcript_id "Ledus.S4G094600.t1"; gene_id "Ledus.S4G094600"
Ledus.S4	AUGUSTUS	start_codon	6804249	6804251	.	-	0	transcript_id "Ledus.S4G094600.t1"; gene_id "Ledus.S4G094600"
# This transcript jg3130.t2 is derived from g565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3131.t1 is derived from g566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6168664	6170265	.	-	.	Ledus.S1G055200
Ledus.S1	AUGUSTUS	transcript	6168664	6170265	.	-	.	transcript_id "Ledus.S1G055200.t1"; gene_id "Ledus.S1G055200"
Ledus.S1	AUGUSTUS	stop_codon	6168661	6168663	.	-	0	transcript_id "Ledus.S1G055200.t1"; gene_id "Ledus.S1G055200"
Ledus.S1	AUGUSTUS	CDS	6168664	6169106	1	-	2	transcript_id "Ledus.S1G055200.t1"; gene_id "Ledus.S1G055200"
Ledus.S1	AUGUSTUS	exon	6168664	6169106	.	-	.	transcript_id "Ledus.S1G055200.t1"; gene_id "Ledus.S1G055200"
Ledus.S1	AUGUSTUS	intron	6169107	6169206	.	-	.	transcript_id "Ledus.S1G055200.t1"; gene_id "Ledus.S1G055200"
Ledus.S1	AUGUSTUS	CDS	6169207	6169372	1	-	0	transcript_id "Ledus.S1G055200.t1"; gene_id "Ledus.S1G055200"
Ledus.S1	AUGUSTUS	exon	6169207	6169372	.	-	.	transcript_id "Ledus.S1G055200.t1"; gene_id "Ledus.S1G055200"
Ledus.S1	AUGUSTUS	intron	6169373	6169464	.	-	.	transcript_id "Ledus.S1G055200.t1"; gene_id "Ledus.S1G055200"
Ledus.S1	AUGUSTUS	CDS	6169465	6170265	0.77	-	0	transcript_id "Ledus.S1G055200.t1"; gene_id "Ledus.S1G055200"
Ledus.S1	AUGUSTUS	exon	6169465	6170265	.	-	.	transcript_id "Ledus.S1G055200.t1"; gene_id "Ledus.S1G055200"
Ledus.S1	AUGUSTUS	start_codon	6170263	6170265	.	-	0	transcript_id "Ledus.S1G055200.t1"; gene_id "Ledus.S1G055200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7644.t1 is derived from g12315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4787145	4788549	.	+	.	Ledus.S5G042200
Ledus.S5	AUGUSTUS	transcript	4787145	4788549	.	+	.	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	start_codon	4787145	4787147	.	+	0	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	CDS	4787145	4787450	0.52	+	0	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	exon	4787145	4787450	.	+	.	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	intron	4787451	4787557	.	+	.	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	CDS	4787558	4787779	0.67	+	0	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	exon	4787558	4787779	.	+	.	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	intron	4787780	4787870	.	+	.	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	CDS	4787871	4787974	1	+	0	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	exon	4787871	4787974	.	+	.	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	intron	4787975	4788103	.	+	.	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	CDS	4788104	4788242	0.95	+	1	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	exon	4788104	4788242	.	+	.	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	intron	4788243	4788345	.	+	.	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	CDS	4788346	4788549	0.95	+	0	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	exon	4788346	4788549	.	+	.	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
Ledus.S5	AUGUSTUS	stop_codon	4788550	4788552	.	+	0	transcript_id "Ledus.S5G042200.t1"; gene_id "Ledus.S5G042200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2094.t1 is derived from g8957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14704173	14705348	.	-	.	Ledus.S2G197600
Ledus.S2	AUGUSTUS	transcript	14704173	14705348	.	-	.	transcript_id "Ledus.S2G197600.t1"; gene_id "Ledus.S2G197600"
Ledus.S2	AUGUSTUS	stop_codon	14704170	14704172	.	-	0	transcript_id "Ledus.S2G197600.t1"; gene_id "Ledus.S2G197600"
Ledus.S2	AUGUSTUS	CDS	14704173	14705348	1	-	0	transcript_id "Ledus.S2G197600.t1"; gene_id "Ledus.S2G197600"
Ledus.S2	AUGUSTUS	exon	14704173	14705348	.	-	.	transcript_id "Ledus.S2G197600.t1"; gene_id "Ledus.S2G197600"
Ledus.S2	AUGUSTUS	start_codon	14705346	14705348	.	-	0	transcript_id "Ledus.S2G197600.t1"; gene_id "Ledus.S2G197600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4782.t1 is derived from g2220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19756221	19756442	.	+	.	Ledus.S1G220300
Ledus.S1	AUGUSTUS	transcript	19756221	19756442	.	+	.	transcript_id "Ledus.S1G220300.t1"; gene_id "Ledus.S1G220300"
Ledus.S1	AUGUSTUS	start_codon	19756221	19756223	.	+	0	transcript_id "Ledus.S1G220300.t1"; gene_id "Ledus.S1G220300"
Ledus.S1	AUGUSTUS	CDS	19756221	19756442	0.01	+	0	transcript_id "Ledus.S1G220300.t1"; gene_id "Ledus.S1G220300"
Ledus.S1	AUGUSTUS	exon	19756221	19756442	.	+	.	transcript_id "Ledus.S1G220300.t1"; gene_id "Ledus.S1G220300"
Ledus.S1	AUGUSTUS	stop_codon	19756443	19756445	.	+	0	transcript_id "Ledus.S1G220300.t1"; gene_id "Ledus.S1G220300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11658.t1 is derived from g5277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5774569	5775385	.	+	.	Ledus.S4G081400
Ledus.S4	AUGUSTUS	transcript	5774569	5775385	.	+	.	transcript_id "Ledus.S4G081400.t1"; gene_id "Ledus.S4G081400"
Ledus.S4	AUGUSTUS	start_codon	5774569	5774571	.	+	0	transcript_id "Ledus.S4G081400.t1"; gene_id "Ledus.S4G081400"
Ledus.S4	AUGUSTUS	CDS	5774569	5774756	0.53	+	0	transcript_id "Ledus.S4G081400.t1"; gene_id "Ledus.S4G081400"
Ledus.S4	AUGUSTUS	exon	5774569	5774756	.	+	.	transcript_id "Ledus.S4G081400.t1"; gene_id "Ledus.S4G081400"
Ledus.S4	AUGUSTUS	intron	5774757	5774841	.	+	.	transcript_id "Ledus.S4G081400.t1"; gene_id "Ledus.S4G081400"
Ledus.S4	AUGUSTUS	CDS	5774842	5775385	0.54	+	1	transcript_id "Ledus.S4G081400.t1"; gene_id "Ledus.S4G081400"
Ledus.S4	AUGUSTUS	exon	5774842	5775385	.	+	.	transcript_id "Ledus.S4G081400.t1"; gene_id "Ledus.S4G081400"
Ledus.S4	AUGUSTUS	stop_codon	5775386	5775388	.	+	0	transcript_id "Ledus.S4G081400.t1"; gene_id "Ledus.S4G081400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11114.t1 is derived from g4732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1916425	1921667	.	-	.	Ledus.S4G027000
Ledus.S4	AUGUSTUS	transcript	1916425	1921667	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	stop_codon	1916422	1916424	.	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1916425	1916474	0.86	-	2	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1916425	1916474	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1916475	1916592	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1916593	1916662	1	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1916593	1916662	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1916663	1916791	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1916792	1916877	1	-	2	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1916792	1916877	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1916878	1916983	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1916984	1917047	1	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1916984	1917047	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1917048	1917146	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1917147	1917227	1	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1917147	1917227	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1917228	1917394	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1917395	1917545	1	-	1	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1917395	1917545	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1917546	1917667	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1917668	1917750	1	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1917668	1917750	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1917751	1917947	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1917948	1918052	1	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1917948	1918052	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1918053	1918213	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1918214	1918273	1	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1918214	1918273	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1918274	1918368	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1918369	1918447	1	-	1	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1918369	1918447	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1918448	1918568	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1918569	1919026	1	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1918569	1919026	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1919027	1919118	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1919119	1919181	1	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1919119	1919181	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1919182	1919287	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1919288	1919407	1	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1919288	1919407	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1919408	1919496	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1919497	1919538	1	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1919497	1919538	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1919539	1919668	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1919669	1919747	1	-	1	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1919669	1919747	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1919748	1919865	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1919866	1919975	1	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1919866	1919975	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1919976	1920139	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1920140	1920324	1	-	2	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1920140	1920324	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1920325	1920419	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1920420	1920469	1	-	1	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1920420	1920469	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1920470	1920604	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1920605	1920684	0.97	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1920605	1920684	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1920685	1920790	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1920791	1920850	0.97	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1920791	1920850	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	intron	1920851	1921103	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	CDS	1921104	1921667	0.7	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	exon	1921104	1921667	.	-	.	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
Ledus.S4	AUGUSTUS	start_codon	1921665	1921667	.	-	0	transcript_id "Ledus.S4G027000.t1"; gene_id "Ledus.S4G027000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6560.t1 is derived from g4003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32401281	32403365	.	-	.	Ledus.S1G398100
Ledus.S1	AUGUSTUS	transcript	32401281	32403365	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	stop_codon	32401278	32401280	.	-	0	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	CDS	32401281	32401445	0.93	-	0	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	exon	32401281	32401445	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	intron	32401446	32401534	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	CDS	32401535	32401750	1	-	0	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	exon	32401535	32401750	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	intron	32401751	32401850	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	CDS	32401851	32401939	1	-	2	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	exon	32401851	32401939	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	intron	32401940	32402035	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	CDS	32402036	32402096	1	-	0	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	exon	32402036	32402096	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	intron	32402097	32402226	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	CDS	32402227	32402288	1	-	2	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	exon	32402227	32402288	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	intron	32402289	32402388	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	CDS	32402389	32402402	1	-	1	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	exon	32402389	32402402	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	intron	32402403	32402574	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	CDS	32402575	32402759	0.74	-	0	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	exon	32402575	32402759	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	intron	32402760	32402857	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	CDS	32402858	32402915	1	-	1	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	exon	32402858	32402915	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	intron	32402916	32403081	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	CDS	32403082	32403140	1	-	0	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	exon	32403082	32403140	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	intron	32403141	32403275	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	CDS	32403276	32403365	1	-	0	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	exon	32403276	32403365	.	-	.	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
Ledus.S1	AUGUSTUS	start_codon	32403363	32403365	.	-	0	transcript_id "Ledus.S1G398100.t1"; gene_id "Ledus.S1G398100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4079.t1 is derived from g1515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14502768	14505165	.	+	.	Ledus.S1G150000
Ledus.S1	AUGUSTUS	transcript	14502768	14505165	.	+	.	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	start_codon	14502768	14502770	.	+	0	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	CDS	14502768	14503178	0.65	+	0	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	exon	14502768	14503178	.	+	.	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	intron	14503179	14503280	.	+	.	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	CDS	14503281	14503539	1	+	0	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	exon	14503281	14503539	.	+	.	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	intron	14503540	14503659	.	+	.	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	CDS	14503660	14503830	1	+	2	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	exon	14503660	14503830	.	+	.	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	intron	14503831	14503936	.	+	.	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	CDS	14503937	14504074	1	+	2	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	exon	14503937	14504074	.	+	.	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	intron	14504075	14504146	.	+	.	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	CDS	14504147	14505165	0.92	+	2	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	exon	14504147	14505165	.	+	.	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
Ledus.S1	AUGUSTUS	stop_codon	14505166	14505168	.	+	0	transcript_id "Ledus.S1G150000.t1"; gene_id "Ledus.S1G150000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3481.t1 is derived from g916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8665259	8666358	.	-	.	Ledus.S1G090200
Ledus.S1	AUGUSTUS	transcript	8665259	8666358	.	-	.	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	stop_codon	8665256	8665258	.	-	0	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	CDS	8665259	8665310	1	-	1	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	exon	8665259	8665310	.	-	.	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	intron	8665311	8665403	.	-	.	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	CDS	8665404	8665568	1	-	1	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	exon	8665404	8665568	.	-	.	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	intron	8665569	8665650	.	-	.	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	CDS	8665651	8665727	1	-	0	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	exon	8665651	8665727	.	-	.	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	intron	8665728	8665826	.	-	.	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	CDS	8665827	8665967	1	-	0	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	exon	8665827	8665967	.	-	.	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	intron	8665968	8666037	.	-	.	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	CDS	8666038	8666115	1	-	0	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	exon	8666038	8666115	.	-	.	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	intron	8666116	8666247	.	-	.	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	CDS	8666248	8666358	0.63	-	0	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	exon	8666248	8666358	.	-	.	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	start_codon	8666356	8666358	.	-	0	transcript_id "Ledus.S1G090200.t1"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	transcript	8665259	8666358	.	-	.	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	stop_codon	8665256	8665258	.	-	0	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	CDS	8665259	8665310	1	-	1	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	exon	8665259	8665310	.	-	.	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	intron	8665311	8665403	.	-	.	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	CDS	8665404	8665574	1	-	1	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	exon	8665404	8665574	.	-	.	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	intron	8665575	8665650	.	-	.	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	CDS	8665651	8665727	1	-	0	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	exon	8665651	8665727	.	-	.	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	intron	8665728	8665826	.	-	.	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	CDS	8665827	8665967	1	-	0	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	exon	8665827	8665967	.	-	.	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	intron	8665968	8666037	.	-	.	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	CDS	8666038	8666115	1	-	0	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	exon	8666038	8666115	.	-	.	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	intron	8666116	8666247	.	-	.	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	CDS	8666248	8666358	0.6	-	0	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	exon	8666248	8666358	.	-	.	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
Ledus.S1	AUGUSTUS	start_codon	8666356	8666358	.	-	0	transcript_id "Ledus.S1G090200.t2"; gene_id "Ledus.S1G090200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5658.t1 is derived from g3097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25616481	25618163	.	+	.	Ledus.S1G307900
Ledus.S1	AUGUSTUS	transcript	25616481	25618163	.	+	.	transcript_id "Ledus.S1G307900.t1"; gene_id "Ledus.S1G307900"
Ledus.S1	AUGUSTUS	start_codon	25616481	25616483	.	+	0	transcript_id "Ledus.S1G307900.t1"; gene_id "Ledus.S1G307900"
Ledus.S1	AUGUSTUS	CDS	25616481	25618163	0.83	+	0	transcript_id "Ledus.S1G307900.t1"; gene_id "Ledus.S1G307900"
Ledus.S1	AUGUSTUS	exon	25616481	25618163	.	+	.	transcript_id "Ledus.S1G307900.t1"; gene_id "Ledus.S1G307900"
Ledus.S1	AUGUSTUS	stop_codon	25618164	25618166	.	+	0	transcript_id "Ledus.S1G307900.t1"; gene_id "Ledus.S1G307900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1188.t1 is derived from g8049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8415811	8418422	.	+	.	Ledus.S2G107000
Ledus.S2	AUGUSTUS	transcript	8415811	8418422	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	start_codon	8415811	8415813	.	+	0	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	CDS	8415811	8416384	0.89	+	0	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	exon	8415811	8416384	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	intron	8416385	8416508	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	CDS	8416509	8416649	0.7	+	2	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	exon	8416509	8416649	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	intron	8416650	8416940	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	CDS	8416941	8417234	0.31	+	2	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	exon	8416941	8417234	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	intron	8417235	8417345	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	CDS	8417346	8417434	0.97	+	2	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	exon	8417346	8417434	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	intron	8417435	8417519	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	CDS	8417520	8417561	1	+	0	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	exon	8417520	8417561	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	intron	8417562	8417702	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	CDS	8417703	8417744	1	+	0	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	exon	8417703	8417744	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	intron	8417745	8417843	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	CDS	8417844	8417927	0.54	+	0	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	exon	8417844	8417927	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	intron	8417928	8418035	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	CDS	8418036	8418123	0.8	+	0	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	exon	8418036	8418123	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	intron	8418124	8418221	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	CDS	8418222	8418319	1	+	2	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	exon	8418222	8418319	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	intron	8418320	8418395	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	CDS	8418396	8418422	1	+	0	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	exon	8418396	8418422	.	+	.	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
Ledus.S2	AUGUSTUS	stop_codon	8418423	8418425	.	+	0	transcript_id "Ledus.S2G107000.t1"; gene_id "Ledus.S2G107000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1295.t1 is derived from g8156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9139236	9140967	.	+	.	Ledus.S2G117700
Ledus.S2	AUGUSTUS	transcript	9139236	9140967	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	start_codon	9139236	9139238	.	+	0	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	CDS	9139236	9139244	0.99	+	0	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	exon	9139236	9139244	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	intron	9139245	9139420	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	CDS	9139421	9139573	1	+	0	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	exon	9139421	9139573	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	intron	9139574	9139723	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	CDS	9139724	9139940	0.99	+	0	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	exon	9139724	9139940	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	intron	9139941	9140046	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	CDS	9140047	9140213	1	+	2	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	exon	9140047	9140213	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	intron	9140214	9140346	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	CDS	9140347	9140471	1	+	0	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	exon	9140347	9140471	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	intron	9140472	9140576	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	CDS	9140577	9140637	0.98	+	1	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	exon	9140577	9140637	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	intron	9140638	9140767	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	CDS	9140768	9140816	0.98	+	0	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	exon	9140768	9140816	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	intron	9140817	9140902	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	CDS	9140903	9140967	0.98	+	2	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	exon	9140903	9140967	.	+	.	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
Ledus.S2	AUGUSTUS	stop_codon	9140968	9140970	.	+	0	transcript_id "Ledus.S2G117700.t1"; gene_id "Ledus.S2G117700"
# This transcript jg6157.t2 is derived from g3600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6158.t1 is derived from g3601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29318602	29323086	.	-	.	Ledus.S1G357900
Ledus.S1	AUGUSTUS	transcript	29318602	29323086	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	stop_codon	29318599	29318601	.	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29318602	29318892	0.99	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29318602	29318892	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29318893	29319094	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29319095	29319249	1	-	2	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29319095	29319249	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29319250	29319379	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29319380	29319428	1	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29319380	29319428	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29319429	29319560	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29319561	29319788	1	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29319561	29319788	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29319789	29319872	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29319873	29319913	1	-	2	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29319873	29319913	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29319914	29320013	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29320014	29320143	1	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29320014	29320143	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29320144	29320278	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29320279	29320347	1	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29320279	29320347	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29320348	29320481	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29320482	29320535	0.98	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29320482	29320535	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29320536	29320636	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29320637	29320795	0.96	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29320637	29320795	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29320796	29320994	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29320995	29321132	1	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29320995	29321132	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29321133	29321247	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29321248	29321313	1	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29321248	29321313	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29321314	29321411	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29321412	29321451	1	-	1	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29321412	29321451	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29321452	29321598	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29321599	29321645	1	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29321599	29321645	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29321646	29321840	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29321841	29322039	1	-	1	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29321841	29322039	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29322040	29322129	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29322130	29322193	0.61	-	2	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29322130	29322193	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29322194	29322296	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29322297	29322314	0.62	-	2	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29322297	29322314	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29322315	29322847	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29322848	29322903	0.92	-	1	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29322848	29322903	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29322904	29323015	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29323016	29323086	0.92	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29323016	29323086	.	-	.	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	start_codon	29323084	29323086	.	-	0	transcript_id "Ledus.S1G357900.t1"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	transcript	29318602	29323086	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	stop_codon	29318599	29318601	.	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29318602	29318892	0.95	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29318602	29318892	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29318893	29319094	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29319095	29319249	1	-	2	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29319095	29319249	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29319250	29319379	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29319380	29319428	1	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29319380	29319428	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29319429	29319560	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29319561	29319788	0.99	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29319561	29319788	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29319789	29319872	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29319873	29319913	1	-	2	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29319873	29319913	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29319914	29320013	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29320014	29320143	1	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29320014	29320143	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29320144	29320278	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29320279	29320347	1	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29320279	29320347	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29320348	29320481	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29320482	29320535	0.98	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29320482	29320535	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29320536	29320636	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29320637	29320795	0.97	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29320637	29320795	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29320796	29320994	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29320995	29321132	1	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29320995	29321132	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29321133	29321247	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29321248	29321313	1	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29321248	29321313	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29321314	29321411	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29321412	29321451	1	-	1	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29321412	29321451	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29321452	29321598	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29321599	29321645	1	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29321599	29321645	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29321646	29321840	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29321841	29322039	1	-	1	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29321841	29322039	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29322040	29322129	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29322130	29322167	0.49	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29322130	29322167	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29322168	29322296	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29322297	29322314	0.53	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29322297	29322314	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29322315	29322677	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29322678	29322903	0.57	-	1	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29322678	29322903	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	intron	29322904	29323015	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	CDS	29323016	29323086	0.57	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	exon	29323016	29323086	.	-	.	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
Ledus.S1	AUGUSTUS	start_codon	29323084	29323086	.	-	0	transcript_id "Ledus.S1G357900.t2"; gene_id "Ledus.S1G357900"
# This transcript jg7594.t2 is derived from g12265.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7594.t3 is derived from g12265.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7595.t1 is derived from g12266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4275720	4283762	.	-	.	Ledus.S5G037300
Ledus.S5	AUGUSTUS	transcript	4275720	4283762	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	stop_codon	4275717	4275719	.	-	0	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	CDS	4275720	4275828	0.8	-	1	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	exon	4275720	4275828	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	intron	4275829	4275914	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	CDS	4275915	4276189	0.81	-	0	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	exon	4275915	4276189	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	intron	4276190	4276266	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	CDS	4276267	4276518	0.61	-	0	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	exon	4276267	4276518	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	intron	4276519	4276665	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	CDS	4276666	4276845	0.62	-	0	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	exon	4276666	4276845	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	intron	4276846	4277184	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	CDS	4277185	4277343	0.34	-	0	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	exon	4277185	4277343	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	intron	4277344	4277460	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	CDS	4277461	4277624	0.95	-	2	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	exon	4277461	4277624	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	intron	4277625	4277739	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	CDS	4277740	4277819	1	-	1	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	exon	4277740	4277819	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	intron	4277820	4277907	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	CDS	4277908	4283762	0.93	-	0	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	exon	4277908	4283762	.	-	.	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
Ledus.S5	AUGUSTUS	start_codon	4283760	4283762	.	-	0	transcript_id "Ledus.S5G037300.t1"; gene_id "Ledus.S5G037300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6396.t1 is derived from g3839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31029424	31032684	.	-	.	Ledus.S1G381700
Ledus.S1	AUGUSTUS	transcript	31029424	31032684	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	stop_codon	31029421	31029423	.	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31029424	31029489	0.79	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31029424	31029489	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31029490	31029603	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31029604	31029664	0.8	-	1	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31029604	31029664	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31029665	31029922	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31029923	31029981	1	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31029923	31029981	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31029982	31030093	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31030094	31030164	0.99	-	2	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31030094	31030164	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31030165	31030280	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31030281	31030380	0.98	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31030281	31030380	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31030381	31030485	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31030486	31030578	0.99	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31030486	31030578	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31030579	31030839	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31030840	31030947	1	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31030840	31030947	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31030948	31031120	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31031121	31031187	1	-	1	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31031121	31031187	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31031188	31031259	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31031260	31031363	1	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31031260	31031363	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31031364	31031485	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31031486	31031692	0.97	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31031486	31031692	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31031693	31031876	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31031877	31031969	1	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31031877	31031969	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31031970	31032064	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31032065	31032328	0.99	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31032065	31032328	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31032329	31032416	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31032417	31032524	0.99	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31032417	31032524	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	intron	31032525	31032645	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	CDS	31032646	31032684	0.99	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	exon	31032646	31032684	.	-	.	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
Ledus.S1	AUGUSTUS	start_codon	31032682	31032684	.	-	0	transcript_id "Ledus.S1G381700.t1"; gene_id "Ledus.S1G381700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10643.t1 is derived from g11673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16828616	16831126	.	-	.	Ledus.S3G212000
Ledus.S3	AUGUSTUS	transcript	16828616	16831126	.	-	.	transcript_id "Ledus.S3G212000.t1"; gene_id "Ledus.S3G212000"
Ledus.S3	AUGUSTUS	stop_codon	16828613	16828615	.	-	0	transcript_id "Ledus.S3G212000.t1"; gene_id "Ledus.S3G212000"
Ledus.S3	AUGUSTUS	CDS	16828616	16831126	0.96	-	0	transcript_id "Ledus.S3G212000.t1"; gene_id "Ledus.S3G212000"
Ledus.S3	AUGUSTUS	exon	16828616	16831126	.	-	.	transcript_id "Ledus.S3G212000.t1"; gene_id "Ledus.S3G212000"
Ledus.S3	AUGUSTUS	start_codon	16831124	16831126	.	-	0	transcript_id "Ledus.S3G212000.t1"; gene_id "Ledus.S3G212000"
Ledus.S3	AUGUSTUS	transcript	16828616	16829197	.	-	.	transcript_id "Ledus.S3G212000.t2"; gene_id "Ledus.S3G212000"
Ledus.S3	AUGUSTUS	stop_codon	16828613	16828615	.	-	0	transcript_id "Ledus.S3G212000.t2"; gene_id "Ledus.S3G212000"
Ledus.S3	AUGUSTUS	CDS	16828616	16829197	0.62	-	0	transcript_id "Ledus.S3G212000.t2"; gene_id "Ledus.S3G212000"
Ledus.S3	AUGUSTUS	exon	16828616	16829197	.	-	.	transcript_id "Ledus.S3G212000.t2"; gene_id "Ledus.S3G212000"
Ledus.S3	AUGUSTUS	start_codon	16829195	16829197	.	-	0	transcript_id "Ledus.S3G212000.t2"; gene_id "Ledus.S3G212000"
# This transcript jg4572.t2 is derived from g2009.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4573.t1 is derived from g2010.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17781419	17781652	.	+	.	Ledus.S1G199400
Ledus.S1	AUGUSTUS	transcript	17781419	17781652	.	+	.	transcript_id "Ledus.S1G199400.t1"; gene_id "Ledus.S1G199400"
Ledus.S1	AUGUSTUS	start_codon	17781419	17781421	.	+	0	transcript_id "Ledus.S1G199400.t1"; gene_id "Ledus.S1G199400"
Ledus.S1	AUGUSTUS	CDS	17781419	17781652	0.71	+	0	transcript_id "Ledus.S1G199400.t1"; gene_id "Ledus.S1G199400"
Ledus.S1	AUGUSTUS	exon	17781419	17781652	.	+	.	transcript_id "Ledus.S1G199400.t1"; gene_id "Ledus.S1G199400"
Ledus.S1	AUGUSTUS	stop_codon	17781653	17781655	.	+	0	transcript_id "Ledus.S1G199400.t1"; gene_id "Ledus.S1G199400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10130.t1 is derived from g11160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12958113	12958748	.	+	.	Ledus.S3G160700
Ledus.S3	AUGUSTUS	transcript	12958113	12958748	.	+	.	transcript_id "Ledus.S3G160700.t1"; gene_id "Ledus.S3G160700"
Ledus.S3	AUGUSTUS	start_codon	12958113	12958115	.	+	0	transcript_id "Ledus.S3G160700.t1"; gene_id "Ledus.S3G160700"
Ledus.S3	AUGUSTUS	CDS	12958113	12958748	0.99	+	0	transcript_id "Ledus.S3G160700.t1"; gene_id "Ledus.S3G160700"
Ledus.S3	AUGUSTUS	exon	12958113	12958748	.	+	.	transcript_id "Ledus.S3G160700.t1"; gene_id "Ledus.S3G160700"
Ledus.S3	AUGUSTUS	stop_codon	12958749	12958751	.	+	0	transcript_id "Ledus.S3G160700.t1"; gene_id "Ledus.S3G160700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8412.t1 is derived from g13084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11526368	11530770	.	+	.	Ledus.S5G119000
Ledus.S5	AUGUSTUS	transcript	11526368	11530770	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	start_codon	11526368	11526370	.	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11526368	11526502	0.86	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11526368	11526502	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11526503	11526614	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11526615	11526749	0.89	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11526615	11526749	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11526750	11526925	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11526926	11527066	1	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11526926	11527066	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11527067	11527199	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11527200	11527331	0.73	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11527200	11527331	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11527332	11527435	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11527436	11527621	0.7	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11527436	11527621	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11527622	11527731	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11527732	11527809	1	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11527732	11527809	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11527810	11527903	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11527904	11528014	1	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11527904	11528014	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11528015	11528112	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11528113	11528214	1	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11528113	11528214	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11528215	11528304	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11528305	11528428	1	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11528305	11528428	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11528429	11528634	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11528635	11528879	1	+	2	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11528635	11528879	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11528880	11529041	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11529042	11529230	1	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11529042	11529230	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11529231	11529312	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11529313	11529455	0.99	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11529313	11529455	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11529456	11529570	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11529571	11529655	0.96	+	1	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11529571	11529655	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11529656	11529745	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11529746	11529955	1	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11529746	11529955	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11529956	11530106	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11530107	11530259	1	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11530107	11530259	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11530260	11530354	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11530355	11530459	1	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11530355	11530459	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	intron	11530460	11530581	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	CDS	11530582	11530770	1	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	exon	11530582	11530770	.	+	.	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
Ledus.S5	AUGUSTUS	stop_codon	11530771	11530773	.	+	0	transcript_id "Ledus.S5G119000.t1"; gene_id "Ledus.S5G119000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10432.t1 is derived from g11462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15088499	15089222	.	+	.	Ledus.S3G190900
Ledus.S3	AUGUSTUS	transcript	15088499	15089222	.	+	.	transcript_id "Ledus.S3G190900.t1"; gene_id "Ledus.S3G190900"
Ledus.S3	AUGUSTUS	start_codon	15088499	15088501	.	+	0	transcript_id "Ledus.S3G190900.t1"; gene_id "Ledus.S3G190900"
Ledus.S3	AUGUSTUS	CDS	15088499	15088905	0.34	+	0	transcript_id "Ledus.S3G190900.t1"; gene_id "Ledus.S3G190900"
Ledus.S3	AUGUSTUS	exon	15088499	15088905	.	+	.	transcript_id "Ledus.S3G190900.t1"; gene_id "Ledus.S3G190900"
Ledus.S3	AUGUSTUS	intron	15088906	15089029	.	+	.	transcript_id "Ledus.S3G190900.t1"; gene_id "Ledus.S3G190900"
Ledus.S3	AUGUSTUS	CDS	15089030	15089222	0.5	+	1	transcript_id "Ledus.S3G190900.t1"; gene_id "Ledus.S3G190900"
Ledus.S3	AUGUSTUS	exon	15089030	15089222	.	+	.	transcript_id "Ledus.S3G190900.t1"; gene_id "Ledus.S3G190900"
Ledus.S3	AUGUSTUS	stop_codon	15089223	15089225	.	+	0	transcript_id "Ledus.S3G190900.t1"; gene_id "Ledus.S3G190900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7079.t1 is derived from g6610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1290073	1292625	.	-	.	Ledus.C7G014000
Ledus.C7	AUGUSTUS	transcript	1290073	1292625	.	-	.	transcript_id "Ledus.C7G014000.t1"; gene_id "Ledus.C7G014000"
Ledus.C7	AUGUSTUS	stop_codon	1290070	1290072	.	-	0	transcript_id "Ledus.C7G014000.t1"; gene_id "Ledus.C7G014000"
Ledus.C7	AUGUSTUS	CDS	1290073	1290620	0.85	-	2	transcript_id "Ledus.C7G014000.t1"; gene_id "Ledus.C7G014000"
Ledus.C7	AUGUSTUS	exon	1290073	1290620	.	-	.	transcript_id "Ledus.C7G014000.t1"; gene_id "Ledus.C7G014000"
Ledus.C7	AUGUSTUS	intron	1290621	1290719	.	-	.	transcript_id "Ledus.C7G014000.t1"; gene_id "Ledus.C7G014000"
Ledus.C7	AUGUSTUS	CDS	1290720	1292625	0.81	-	0	transcript_id "Ledus.C7G014000.t1"; gene_id "Ledus.C7G014000"
Ledus.C7	AUGUSTUS	exon	1290720	1292625	.	-	.	transcript_id "Ledus.C7G014000.t1"; gene_id "Ledus.C7G014000"
Ledus.C7	AUGUSTUS	start_codon	1292623	1292625	.	-	0	transcript_id "Ledus.C7G014000.t1"; gene_id "Ledus.C7G014000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7915.t1 is derived from g12586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7810510	7810884	.	-	.	Ledus.S5G069300
Ledus.S5	AUGUSTUS	transcript	7810510	7810884	.	-	.	transcript_id "Ledus.S5G069300.t1"; gene_id "Ledus.S5G069300"
Ledus.S5	AUGUSTUS	stop_codon	7810507	7810509	.	-	0	transcript_id "Ledus.S5G069300.t1"; gene_id "Ledus.S5G069300"
Ledus.S5	AUGUSTUS	CDS	7810510	7810612	0.67	-	1	transcript_id "Ledus.S5G069300.t1"; gene_id "Ledus.S5G069300"
Ledus.S5	AUGUSTUS	exon	7810510	7810612	.	-	.	transcript_id "Ledus.S5G069300.t1"; gene_id "Ledus.S5G069300"
Ledus.S5	AUGUSTUS	intron	7810613	7810696	.	-	.	transcript_id "Ledus.S5G069300.t1"; gene_id "Ledus.S5G069300"
Ledus.S5	AUGUSTUS	CDS	7810697	7810884	0.65	-	0	transcript_id "Ledus.S5G069300.t1"; gene_id "Ledus.S5G069300"
Ledus.S5	AUGUSTUS	exon	7810697	7810884	.	-	.	transcript_id "Ledus.S5G069300.t1"; gene_id "Ledus.S5G069300"
Ledus.S5	AUGUSTUS	start_codon	7810882	7810884	.	-	0	transcript_id "Ledus.S5G069300.t1"; gene_id "Ledus.S5G069300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5828.t1 is derived from g3270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27174245	27178440	.	-	.	Ledus.S1G324900
Ledus.S1	AUGUSTUS	transcript	27174245	27178440	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	stop_codon	27174242	27174244	.	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27174245	27174271	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27174245	27174271	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27174272	27174819	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27174820	27174930	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27174820	27174930	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27174931	27175026	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27175027	27175101	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27175027	27175101	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27175102	27175196	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27175197	27175319	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27175197	27175319	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27175320	27175428	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27175429	27175489	1	-	1	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27175429	27175489	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27175490	27175587	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27175588	27175631	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27175588	27175631	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27175632	27175735	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27175736	27175855	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27175736	27175855	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27175856	27175942	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27175943	27176020	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27175943	27176020	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27176021	27176192	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27176193	27176285	0.99	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27176193	27176285	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27176286	27176390	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27176391	27176468	0.99	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27176391	27176468	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27176469	27176582	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27176583	27176651	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27176583	27176651	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27176652	27176840	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27176841	27176915	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27176841	27176915	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27176916	27177074	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27177075	27177137	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27177075	27177137	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27177138	27177218	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27177219	27177308	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27177219	27177308	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27177309	27177411	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27177412	27177508	1	-	1	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27177412	27177508	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27177509	27177701	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27177702	27177799	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27177702	27177799	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27177800	27177901	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27177902	27178010	1	-	1	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27177902	27178010	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27178011	27178090	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27178091	27178119	1	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27178091	27178119	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	intron	27178120	27178407	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	CDS	27178408	27178440	0.52	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	exon	27178408	27178440	.	-	.	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
Ledus.S1	AUGUSTUS	start_codon	27178438	27178440	.	-	0	transcript_id "Ledus.S1G324900.t1"; gene_id "Ledus.S1G324900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1489.t1 is derived from g8350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10558516	10565553	.	-	.	Ledus.S2G137100
Ledus.S2	AUGUSTUS	transcript	10558516	10565553	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	stop_codon	10558513	10558515	.	-	0	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10558516	10559208	0.89	-	0	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10558516	10559208	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	intron	10559209	10559291	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10559292	10559441	1	-	0	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10559292	10559441	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	intron	10559442	10559533	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10559534	10559911	0.82	-	0	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10559534	10559911	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	intron	10559912	10559998	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10559999	10560514	0.54	-	0	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10559999	10560514	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	intron	10560515	10560680	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10560681	10560905	1	-	0	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10560681	10560905	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	intron	10560906	10561105	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10561106	10561240	0.95	-	0	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10561106	10561240	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	intron	10561241	10561426	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10561427	10562056	0.81	-	0	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10561427	10562056	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	intron	10562057	10562152	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10562153	10562760	1	-	2	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10562153	10562760	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	intron	10562761	10562848	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10562849	10563083	1	-	0	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10562849	10563083	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	intron	10563084	10563167	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10563168	10563464	0.66	-	0	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10563168	10563464	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	intron	10563465	10563600	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10563601	10563866	0.65	-	2	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10563601	10563866	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	intron	10563867	10563951	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10563952	10564170	0.73	-	2	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10563952	10564170	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	intron	10564171	10564262	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	CDS	10564263	10565553	0.68	-	0	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	exon	10564263	10565553	.	-	.	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
Ledus.S2	AUGUSTUS	start_codon	10565551	10565553	.	-	0	transcript_id "Ledus.S2G137100.t1"; gene_id "Ledus.S2G137100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1790.t1 is derived from g8653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12617471	12624560	.	+	.	Ledus.S2G167200
Ledus.S2	AUGUSTUS	transcript	12617471	12624560	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	start_codon	12617471	12617473	.	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12617471	12617578	0.96	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12617471	12617578	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12617579	12618008	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12618009	12618121	0.98	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12618009	12618121	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12618122	12618232	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12618233	12618368	1	+	1	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12618233	12618368	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12618369	12618523	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12618524	12618622	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12618524	12618622	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12618623	12618833	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12618834	12618902	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12618834	12618902	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12618903	12619257	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12619258	12619392	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12619258	12619392	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12619393	12619516	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12619517	12619588	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12619517	12619588	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12619589	12619734	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12619735	12619790	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12619735	12619790	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12619791	12620077	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12620078	12620237	0.96	+	1	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12620078	12620237	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12620238	12620344	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12620345	12620509	0.89	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12620345	12620509	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12620510	12620633	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12620634	12620718	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12620634	12620718	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12620719	12620877	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12620878	12621162	0.97	+	2	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12620878	12621162	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12621163	12621267	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12621268	12621428	0.92	+	2	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12621268	12621428	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12621429	12621586	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12621587	12621629	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12621587	12621629	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12621630	12621835	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12621836	12621993	1	+	2	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12621836	12621993	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12621994	12622091	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12622092	12622202	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12622092	12622202	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12622203	12622290	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12622291	12622359	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12622291	12622359	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12622360	12622508	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12622509	12622652	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12622509	12622652	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12622653	12622785	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12622786	12622860	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12622786	12622860	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12622861	12623044	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12623045	12623221	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12623045	12623221	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12623222	12623308	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12623309	12623394	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12623309	12623394	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12623395	12623559	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12623560	12623614	1	+	1	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12623560	12623614	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12623615	12623769	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12623770	12623895	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12623770	12623895	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12623896	12624019	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12624020	12624133	1	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12624020	12624133	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12624134	12624259	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12624260	12624376	0.44	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12624260	12624376	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	intron	12624377	12624488	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	CDS	12624489	12624560	0.89	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	exon	12624489	12624560	.	+	.	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
Ledus.S2	AUGUSTUS	stop_codon	12624561	12624563	.	+	0	transcript_id "Ledus.S2G167200.t1"; gene_id "Ledus.S2G167200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11277.t1 is derived from g4895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3216061	3216267	.	+	.	Ledus.S4G043300
Ledus.S4	AUGUSTUS	transcript	3216061	3216267	.	+	.	transcript_id "Ledus.S4G043300.t1"; gene_id "Ledus.S4G043300"
Ledus.S4	AUGUSTUS	start_codon	3216061	3216063	.	+	0	transcript_id "Ledus.S4G043300.t1"; gene_id "Ledus.S4G043300"
Ledus.S4	AUGUSTUS	CDS	3216061	3216267	0.75	+	0	transcript_id "Ledus.S4G043300.t1"; gene_id "Ledus.S4G043300"
Ledus.S4	AUGUSTUS	exon	3216061	3216267	.	+	.	transcript_id "Ledus.S4G043300.t1"; gene_id "Ledus.S4G043300"
Ledus.S4	AUGUSTUS	stop_codon	3216268	3216270	.	+	0	transcript_id "Ledus.S4G043300.t1"; gene_id "Ledus.S4G043300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2794.t1 is derived from g228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3824071	3824999	.	-	.	Ledus.S1G021500
Ledus.S1	AUGUSTUS	transcript	3824071	3824999	.	-	.	transcript_id "Ledus.S1G021500.t1"; gene_id "Ledus.S1G021500"
Ledus.S1	AUGUSTUS	stop_codon	3824068	3824070	.	-	0	transcript_id "Ledus.S1G021500.t1"; gene_id "Ledus.S1G021500"
Ledus.S1	AUGUSTUS	CDS	3824071	3824904	0.98	-	0	transcript_id "Ledus.S1G021500.t1"; gene_id "Ledus.S1G021500"
Ledus.S1	AUGUSTUS	exon	3824071	3824904	.	-	.	transcript_id "Ledus.S1G021500.t1"; gene_id "Ledus.S1G021500"
Ledus.S1	AUGUSTUS	intron	3824905	3824984	.	-	.	transcript_id "Ledus.S1G021500.t1"; gene_id "Ledus.S1G021500"
Ledus.S1	AUGUSTUS	CDS	3824985	3824999	0.93	-	0	transcript_id "Ledus.S1G021500.t1"; gene_id "Ledus.S1G021500"
Ledus.S1	AUGUSTUS	exon	3824985	3824999	.	-	.	transcript_id "Ledus.S1G021500.t1"; gene_id "Ledus.S1G021500"
Ledus.S1	AUGUSTUS	start_codon	3824997	3824999	.	-	0	transcript_id "Ledus.S1G021500.t1"; gene_id "Ledus.S1G021500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7030.t1 is derived from g6561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	923658	924146	.	-	.	Ledus.C7G009100
Ledus.C7	AUGUSTUS	transcript	923658	924146	.	-	.	transcript_id "Ledus.C7G009100.t1"; gene_id "Ledus.C7G009100"
Ledus.C7	AUGUSTUS	stop_codon	923655	923657	.	-	0	transcript_id "Ledus.C7G009100.t1"; gene_id "Ledus.C7G009100"
Ledus.C7	AUGUSTUS	CDS	923658	924055	0.81	-	2	transcript_id "Ledus.C7G009100.t1"; gene_id "Ledus.C7G009100"
Ledus.C7	AUGUSTUS	exon	923658	924055	.	-	.	transcript_id "Ledus.C7G009100.t1"; gene_id "Ledus.C7G009100"
Ledus.C7	AUGUSTUS	intron	924056	924112	.	-	.	transcript_id "Ledus.C7G009100.t1"; gene_id "Ledus.C7G009100"
Ledus.C7	AUGUSTUS	CDS	924113	924146	0.81	-	0	transcript_id "Ledus.C7G009100.t1"; gene_id "Ledus.C7G009100"
Ledus.C7	AUGUSTUS	exon	924113	924146	.	-	.	transcript_id "Ledus.C7G009100.t1"; gene_id "Ledus.C7G009100"
Ledus.C7	AUGUSTUS	start_codon	924144	924146	.	-	0	transcript_id "Ledus.C7G009100.t1"; gene_id "Ledus.C7G009100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2964.t1 is derived from g399.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4969384	4970734	.	-	.	Ledus.S1G038500
Ledus.S1	AUGUSTUS	transcript	4969384	4970734	.	-	.	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	stop_codon	4969381	4969383	.	-	0	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	CDS	4969384	4969501	1	-	1	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	exon	4969384	4969501	.	-	.	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	intron	4969502	4969757	.	-	.	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	CDS	4969758	4969860	1	-	2	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	exon	4969758	4969860	.	-	.	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	intron	4969861	4969960	.	-	.	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	CDS	4969961	4970099	1	-	0	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	exon	4969961	4970099	.	-	.	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	intron	4970100	4970183	.	-	.	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	CDS	4970184	4970276	1	-	0	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	exon	4970184	4970276	.	-	.	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	intron	4970277	4970350	.	-	.	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	CDS	4970351	4970397	1	-	2	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	exon	4970351	4970397	.	-	.	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	intron	4970398	4970493	.	-	.	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	CDS	4970494	4970734	0.97	-	0	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	exon	4970494	4970734	.	-	.	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	start_codon	4970732	4970734	.	-	0	transcript_id "Ledus.S1G038500.t1"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	transcript	4969384	4970734	.	-	.	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	stop_codon	4969381	4969383	.	-	0	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	CDS	4969384	4969501	0.7	-	1	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	exon	4969384	4969501	.	-	.	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	intron	4969502	4969606	.	-	.	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	CDS	4969607	4969709	0.66	-	2	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	exon	4969607	4969709	.	-	.	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	intron	4969710	4969960	.	-	.	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	CDS	4969961	4970099	1	-	0	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	exon	4969961	4970099	.	-	.	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	intron	4970100	4970183	.	-	.	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	CDS	4970184	4970276	1	-	0	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	exon	4970184	4970276	.	-	.	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	intron	4970277	4970350	.	-	.	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	CDS	4970351	4970397	1	-	2	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	exon	4970351	4970397	.	-	.	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	intron	4970398	4970493	.	-	.	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	CDS	4970494	4970734	0.98	-	0	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	exon	4970494	4970734	.	-	.	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
Ledus.S1	AUGUSTUS	start_codon	4970732	4970734	.	-	0	transcript_id "Ledus.S1G038500.t2"; gene_id "Ledus.S1G038500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2266.t1 is derived from g9129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16752368	16755623	.	-	.	Ledus.S2G214800
Ledus.S2	AUGUSTUS	transcript	16752368	16755623	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	stop_codon	16752365	16752367	.	-	0	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	CDS	16752368	16752462	1	-	2	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	exon	16752368	16752462	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	intron	16752463	16752585	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	CDS	16752586	16752664	1	-	0	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	exon	16752586	16752664	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	intron	16752665	16752781	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	CDS	16752782	16752923	1	-	1	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	exon	16752782	16752923	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	intron	16752924	16753118	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	CDS	16753119	16753192	1	-	0	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	exon	16753119	16753192	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	intron	16753193	16753375	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	CDS	16753376	16753447	1	-	0	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	exon	16753376	16753447	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	intron	16753448	16753556	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	CDS	16753557	16753694	1	-	0	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	exon	16753557	16753694	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	intron	16753695	16753863	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	CDS	16753864	16754014	1	-	1	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	exon	16753864	16754014	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	intron	16754015	16754127	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	CDS	16754128	16754276	0.83	-	0	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	exon	16754128	16754276	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	intron	16754277	16754483	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	CDS	16754484	16754540	1	-	0	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	exon	16754484	16754540	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	intron	16754541	16754756	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	CDS	16754757	16754840	1	-	0	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	exon	16754757	16754840	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	intron	16754841	16754965	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	CDS	16754966	16755073	1	-	0	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	exon	16754966	16755073	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	intron	16755074	16755473	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	CDS	16755474	16755623	0.99	-	0	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	exon	16755474	16755623	.	-	.	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
Ledus.S2	AUGUSTUS	start_codon	16755621	16755623	.	-	0	transcript_id "Ledus.S2G214800.t1"; gene_id "Ledus.S2G214800"
# This transcript jg10241.t2 is derived from g11271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10242.t1 is derived from g11272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13785606	13785815	.	-	.	Ledus.S3G171900
Ledus.S3	AUGUSTUS	transcript	13785606	13785815	.	-	.	transcript_id "Ledus.S3G171900.t1"; gene_id "Ledus.S3G171900"
Ledus.S3	AUGUSTUS	stop_codon	13785603	13785605	.	-	0	transcript_id "Ledus.S3G171900.t1"; gene_id "Ledus.S3G171900"
Ledus.S3	AUGUSTUS	CDS	13785606	13785815	0.98	-	0	transcript_id "Ledus.S3G171900.t1"; gene_id "Ledus.S3G171900"
Ledus.S3	AUGUSTUS	exon	13785606	13785815	.	-	.	transcript_id "Ledus.S3G171900.t1"; gene_id "Ledus.S3G171900"
Ledus.S3	AUGUSTUS	start_codon	13785813	13785815	.	-	0	transcript_id "Ledus.S3G171900.t1"; gene_id "Ledus.S3G171900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12856.t1 is derived from g11890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	311344	311643	.	-	.	Ledus.C11G002000
Ledus.C11	AUGUSTUS	transcript	311344	311643	.	-	.	transcript_id "Ledus.C11G002000.t1"; gene_id "Ledus.C11G002000"
Ledus.C11	AUGUSTUS	stop_codon	311341	311343	.	-	0	transcript_id "Ledus.C11G002000.t1"; gene_id "Ledus.C11G002000"
Ledus.C11	AUGUSTUS	CDS	311344	311643	0.86	-	0	transcript_id "Ledus.C11G002000.t1"; gene_id "Ledus.C11G002000"
Ledus.C11	AUGUSTUS	exon	311344	311643	.	-	.	transcript_id "Ledus.C11G002000.t1"; gene_id "Ledus.C11G002000"
Ledus.C11	AUGUSTUS	start_codon	311641	311643	.	-	0	transcript_id "Ledus.C11G002000.t1"; gene_id "Ledus.C11G002000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg390.t1 is derived from g7251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2182912	2185347	.	+	.	Ledus.S2G027200
Ledus.S2	AUGUSTUS	transcript	2182912	2185347	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	start_codon	2182912	2182914	.	+	0	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	CDS	2182912	2183147	0.6	+	0	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	exon	2182912	2183147	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	intron	2183148	2183231	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	CDS	2183232	2183369	0.8	+	1	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	exon	2183232	2183369	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	intron	2183370	2183995	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	CDS	2183996	2184042	0.6	+	1	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	exon	2183996	2184042	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	intron	2184043	2184183	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	CDS	2184184	2184238	0.65	+	2	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	exon	2184184	2184238	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	intron	2184239	2184452	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	CDS	2184453	2184904	0.23	+	1	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	exon	2184453	2184904	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	intron	2184905	2184996	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	CDS	2184997	2185059	0.96	+	2	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	exon	2184997	2185059	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	intron	2185060	2185162	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	CDS	2185163	2185347	0.55	+	2	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	exon	2185163	2185347	.	+	.	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
Ledus.S2	AUGUSTUS	stop_codon	2185348	2185350	.	+	0	transcript_id "Ledus.S2G027200.t1"; gene_id "Ledus.S2G027200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7462.t1 is derived from g12133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2923009	2923230	.	-	.	Ledus.S5G024000
Ledus.S5	AUGUSTUS	transcript	2923009	2923230	.	-	.	transcript_id "Ledus.S5G024000.t1"; gene_id "Ledus.S5G024000"
Ledus.S5	AUGUSTUS	stop_codon	2923006	2923008	.	-	0	transcript_id "Ledus.S5G024000.t1"; gene_id "Ledus.S5G024000"
Ledus.S5	AUGUSTUS	CDS	2923009	2923230	0.36	-	0	transcript_id "Ledus.S5G024000.t1"; gene_id "Ledus.S5G024000"
Ledus.S5	AUGUSTUS	exon	2923009	2923230	.	-	.	transcript_id "Ledus.S5G024000.t1"; gene_id "Ledus.S5G024000"
Ledus.S5	AUGUSTUS	start_codon	2923228	2923230	.	-	0	transcript_id "Ledus.S5G024000.t1"; gene_id "Ledus.S5G024000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7795.t1 is derived from g12466.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6807481	6807828	.	-	.	Ledus.S5G057300
Ledus.S5	AUGUSTUS	transcript	6807481	6807828	.	-	.	transcript_id "Ledus.S5G057300.t1"; gene_id "Ledus.S5G057300"
Ledus.S5	AUGUSTUS	stop_codon	6807478	6807480	.	-	0	transcript_id "Ledus.S5G057300.t1"; gene_id "Ledus.S5G057300"
Ledus.S5	AUGUSTUS	CDS	6807481	6807828	0.92	-	0	transcript_id "Ledus.S5G057300.t1"; gene_id "Ledus.S5G057300"
Ledus.S5	AUGUSTUS	exon	6807481	6807828	.	-	.	transcript_id "Ledus.S5G057300.t1"; gene_id "Ledus.S5G057300"
Ledus.S5	AUGUSTUS	start_codon	6807826	6807828	.	-	0	transcript_id "Ledus.S5G057300.t1"; gene_id "Ledus.S5G057300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11243.t1 is derived from g4861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2879721	2880704	.	+	.	Ledus.S4G039900
Ledus.S4	AUGUSTUS	transcript	2879721	2880704	.	+	.	transcript_id "Ledus.S4G039900.t1"; gene_id "Ledus.S4G039900"
Ledus.S4	AUGUSTUS	start_codon	2879721	2879723	.	+	0	transcript_id "Ledus.S4G039900.t1"; gene_id "Ledus.S4G039900"
Ledus.S4	AUGUSTUS	CDS	2879721	2879927	0.76	+	0	transcript_id "Ledus.S4G039900.t1"; gene_id "Ledus.S4G039900"
Ledus.S4	AUGUSTUS	exon	2879721	2879927	.	+	.	transcript_id "Ledus.S4G039900.t1"; gene_id "Ledus.S4G039900"
Ledus.S4	AUGUSTUS	intron	2879928	2880011	.	+	.	transcript_id "Ledus.S4G039900.t1"; gene_id "Ledus.S4G039900"
Ledus.S4	AUGUSTUS	CDS	2880012	2880704	0.69	+	0	transcript_id "Ledus.S4G039900.t1"; gene_id "Ledus.S4G039900"
Ledus.S4	AUGUSTUS	exon	2880012	2880704	.	+	.	transcript_id "Ledus.S4G039900.t1"; gene_id "Ledus.S4G039900"
Ledus.S4	AUGUSTUS	stop_codon	2880705	2880707	.	+	0	transcript_id "Ledus.S4G039900.t1"; gene_id "Ledus.S4G039900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5166.t1 is derived from g2605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22051032	22053152	.	-	.	Ledus.S1G258700
Ledus.S1	AUGUSTUS	transcript	22051032	22053152	.	-	.	transcript_id "Ledus.S1G258700.t1"; gene_id "Ledus.S1G258700"
Ledus.S1	AUGUSTUS	stop_codon	22051029	22051031	.	-	0	transcript_id "Ledus.S1G258700.t1"; gene_id "Ledus.S1G258700"
Ledus.S1	AUGUSTUS	CDS	22051032	22053152	0.49	-	0	transcript_id "Ledus.S1G258700.t1"; gene_id "Ledus.S1G258700"
Ledus.S1	AUGUSTUS	exon	22051032	22053152	.	-	.	transcript_id "Ledus.S1G258700.t1"; gene_id "Ledus.S1G258700"
Ledus.S1	AUGUSTUS	start_codon	22053150	22053152	.	-	0	transcript_id "Ledus.S1G258700.t1"; gene_id "Ledus.S1G258700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg306.t1 is derived from g7167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1535083	1535328	.	-	.	Ledus.S2G018800
Ledus.S2	AUGUSTUS	transcript	1535083	1535328	.	-	.	transcript_id "Ledus.S2G018800.t1"; gene_id "Ledus.S2G018800"
Ledus.S2	AUGUSTUS	stop_codon	1535080	1535082	.	-	0	transcript_id "Ledus.S2G018800.t1"; gene_id "Ledus.S2G018800"
Ledus.S2	AUGUSTUS	CDS	1535083	1535328	0.86	-	0	transcript_id "Ledus.S2G018800.t1"; gene_id "Ledus.S2G018800"
Ledus.S2	AUGUSTUS	exon	1535083	1535328	.	-	.	transcript_id "Ledus.S2G018800.t1"; gene_id "Ledus.S2G018800"
Ledus.S2	AUGUSTUS	start_codon	1535326	1535328	.	-	0	transcript_id "Ledus.S2G018800.t1"; gene_id "Ledus.S2G018800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4940.t1 is derived from g2378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20804684	20806117	.	+	.	Ledus.S1G236100
Ledus.S1	AUGUSTUS	transcript	20804684	20806117	.	+	.	transcript_id "Ledus.S1G236100.t1"; gene_id "Ledus.S1G236100"
Ledus.S1	AUGUSTUS	start_codon	20804684	20804686	.	+	0	transcript_id "Ledus.S1G236100.t1"; gene_id "Ledus.S1G236100"
Ledus.S1	AUGUSTUS	CDS	20804684	20805439	0.65	+	0	transcript_id "Ledus.S1G236100.t1"; gene_id "Ledus.S1G236100"
Ledus.S1	AUGUSTUS	exon	20804684	20805439	.	+	.	transcript_id "Ledus.S1G236100.t1"; gene_id "Ledus.S1G236100"
Ledus.S1	AUGUSTUS	intron	20805440	20805655	.	+	.	transcript_id "Ledus.S1G236100.t1"; gene_id "Ledus.S1G236100"
Ledus.S1	AUGUSTUS	CDS	20805656	20806117	0.98	+	0	transcript_id "Ledus.S1G236100.t1"; gene_id "Ledus.S1G236100"
Ledus.S1	AUGUSTUS	exon	20805656	20806117	.	+	.	transcript_id "Ledus.S1G236100.t1"; gene_id "Ledus.S1G236100"
Ledus.S1	AUGUSTUS	stop_codon	20806118	20806120	.	+	0	transcript_id "Ledus.S1G236100.t1"; gene_id "Ledus.S1G236100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9163.t1 is derived from g10193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5179987	5180379	.	+	.	Ledus.S3G064000
Ledus.S3	AUGUSTUS	transcript	5179987	5180379	.	+	.	transcript_id "Ledus.S3G064000.t1"; gene_id "Ledus.S3G064000"
Ledus.S3	AUGUSTUS	start_codon	5179987	5179989	.	+	0	transcript_id "Ledus.S3G064000.t1"; gene_id "Ledus.S3G064000"
Ledus.S3	AUGUSTUS	CDS	5179987	5180379	0.93	+	0	transcript_id "Ledus.S3G064000.t1"; gene_id "Ledus.S3G064000"
Ledus.S3	AUGUSTUS	exon	5179987	5180379	.	+	.	transcript_id "Ledus.S3G064000.t1"; gene_id "Ledus.S3G064000"
Ledus.S3	AUGUSTUS	stop_codon	5180380	5180382	.	+	0	transcript_id "Ledus.S3G064000.t1"; gene_id "Ledus.S3G064000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11497.t1 is derived from g5115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4931652	4935066	.	-	.	Ledus.S4G065300
Ledus.S4	AUGUSTUS	transcript	4931652	4935066	.	-	.	transcript_id "Ledus.S4G065300.t1"; gene_id "Ledus.S4G065300"
Ledus.S4	AUGUSTUS	stop_codon	4931649	4931651	.	-	0	transcript_id "Ledus.S4G065300.t1"; gene_id "Ledus.S4G065300"
Ledus.S4	AUGUSTUS	CDS	4931652	4932082	0.99	-	2	transcript_id "Ledus.S4G065300.t1"; gene_id "Ledus.S4G065300"
Ledus.S4	AUGUSTUS	exon	4931652	4932082	.	-	.	transcript_id "Ledus.S4G065300.t1"; gene_id "Ledus.S4G065300"
Ledus.S4	AUGUSTUS	intron	4932083	4932233	.	-	.	transcript_id "Ledus.S4G065300.t1"; gene_id "Ledus.S4G065300"
Ledus.S4	AUGUSTUS	CDS	4932234	4933914	1	-	0	transcript_id "Ledus.S4G065300.t1"; gene_id "Ledus.S4G065300"
Ledus.S4	AUGUSTUS	exon	4932234	4933914	.	-	.	transcript_id "Ledus.S4G065300.t1"; gene_id "Ledus.S4G065300"
Ledus.S4	AUGUSTUS	intron	4933915	4934025	.	-	.	transcript_id "Ledus.S4G065300.t1"; gene_id "Ledus.S4G065300"
Ledus.S4	AUGUSTUS	CDS	4934026	4935066	0.91	-	0	transcript_id "Ledus.S4G065300.t1"; gene_id "Ledus.S4G065300"
Ledus.S4	AUGUSTUS	exon	4934026	4935066	.	-	.	transcript_id "Ledus.S4G065300.t1"; gene_id "Ledus.S4G065300"
Ledus.S4	AUGUSTUS	start_codon	4935064	4935066	.	-	0	transcript_id "Ledus.S4G065300.t1"; gene_id "Ledus.S4G065300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1507.t1 is derived from g8368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10618450	10626232	.	+	.	Ledus.S2G138900
Ledus.S2	AUGUSTUS	transcript	10618450	10626232	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	start_codon	10618450	10618452	.	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10618450	10618587	1	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10618450	10618587	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10618588	10618971	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10618972	10619139	0.97	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10618972	10619139	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10619140	10619241	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10619242	10619407	0.88	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10619242	10619407	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10619408	10619509	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10619510	10619699	0.54	+	2	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10619510	10619699	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10619700	10619782	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10619783	10619921	0.6	+	1	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10619783	10619921	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10619922	10620012	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10620013	10620172	0.64	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10620013	10620172	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10620173	10620289	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10620290	10620357	0.35	+	2	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10620290	10620357	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10620358	10620460	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10620461	10620559	0.78	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10620461	10620559	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10620560	10620706	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10620707	10620822	0.62	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10620707	10620822	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10620823	10620921	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10620922	10620989	0.38	+	1	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10620922	10620989	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10620990	10621745	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10621746	10621927	0.44	+	2	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10621746	10621927	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10621928	10622033	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10622034	10622144	0.85	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10622034	10622144	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10622145	10622249	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10622250	10622328	1	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10622250	10622328	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10622329	10622588	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10622589	10622732	1	+	2	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10622589	10622732	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10622733	10622824	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10622825	10622938	1	+	2	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10622825	10622938	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10622939	10623026	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10623027	10623148	1	+	2	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10623027	10623148	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10623149	10623245	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10623246	10623328	1	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10623246	10623328	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10623329	10623437	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10623438	10623568	1	+	1	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10623438	10623568	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10623569	10623667	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10623668	10623842	1	+	2	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10623668	10623842	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10623843	10623938	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10623939	10624076	1	+	1	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10623939	10624076	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10624077	10624283	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10624284	10624380	1	+	1	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10624284	10624380	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10624381	10624467	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10624468	10624581	1	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10624468	10624581	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10624582	10624681	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10624682	10624765	1	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10624682	10624765	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10624766	10624849	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10624850	10624958	1	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10624850	10624958	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10624959	10625048	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10625049	10625185	1	+	2	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10625049	10625185	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10625186	10625273	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10625274	10625366	1	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10625274	10625366	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10625367	10625458	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10625459	10625485	0.91	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10625459	10625485	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10625486	10625849	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10625850	10625914	0.4	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10625850	10625914	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	intron	10625915	10626069	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	CDS	10626070	10626232	0.48	+	1	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	exon	10626070	10626232	.	+	.	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
Ledus.S2	AUGUSTUS	stop_codon	10626233	10626235	.	+	0	transcript_id "Ledus.S2G138900.t1"; gene_id "Ledus.S2G138900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12213.t1 is derived from g5832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10411626	10412988	.	+	.	Ledus.S4G136900
Ledus.S4	AUGUSTUS	transcript	10411626	10412988	.	+	.	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	start_codon	10411626	10411628	.	+	0	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	CDS	10411626	10411862	1	+	0	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	exon	10411626	10411862	.	+	.	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	intron	10411863	10411950	.	+	.	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	CDS	10411951	10412239	0.96	+	0	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	exon	10411951	10412239	.	+	.	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	intron	10412240	10412319	.	+	.	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	CDS	10412320	10412421	0.69	+	2	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	exon	10412320	10412421	.	+	.	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	intron	10412422	10412525	.	+	.	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	CDS	10412526	10412543	0.67	+	2	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	exon	10412526	10412543	.	+	.	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	intron	10412544	10412620	.	+	.	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	CDS	10412621	10412988	0.55	+	2	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	exon	10412621	10412988	.	+	.	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
Ledus.S4	AUGUSTUS	stop_codon	10412989	10412991	.	+	0	transcript_id "Ledus.S4G136900.t1"; gene_id "Ledus.S4G136900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg601.t1 is derived from g7462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3583576	3584599	.	-	.	Ledus.S2G048300
Ledus.S2	AUGUSTUS	transcript	3583576	3584599	.	-	.	transcript_id "Ledus.S2G048300.t1"; gene_id "Ledus.S2G048300"
Ledus.S2	AUGUSTUS	stop_codon	3583573	3583575	.	-	0	transcript_id "Ledus.S2G048300.t1"; gene_id "Ledus.S2G048300"
Ledus.S2	AUGUSTUS	CDS	3583576	3583656	1	-	0	transcript_id "Ledus.S2G048300.t1"; gene_id "Ledus.S2G048300"
Ledus.S2	AUGUSTUS	exon	3583576	3583656	.	-	.	transcript_id "Ledus.S2G048300.t1"; gene_id "Ledus.S2G048300"
Ledus.S2	AUGUSTUS	intron	3583657	3584270	.	-	.	transcript_id "Ledus.S2G048300.t1"; gene_id "Ledus.S2G048300"
Ledus.S2	AUGUSTUS	CDS	3584271	3584416	0.97	-	2	transcript_id "Ledus.S2G048300.t1"; gene_id "Ledus.S2G048300"
Ledus.S2	AUGUSTUS	exon	3584271	3584416	.	-	.	transcript_id "Ledus.S2G048300.t1"; gene_id "Ledus.S2G048300"
Ledus.S2	AUGUSTUS	intron	3584417	3584523	.	-	.	transcript_id "Ledus.S2G048300.t1"; gene_id "Ledus.S2G048300"
Ledus.S2	AUGUSTUS	CDS	3584524	3584599	0.56	-	0	transcript_id "Ledus.S2G048300.t1"; gene_id "Ledus.S2G048300"
Ledus.S2	AUGUSTUS	exon	3584524	3584599	.	-	.	transcript_id "Ledus.S2G048300.t1"; gene_id "Ledus.S2G048300"
Ledus.S2	AUGUSTUS	start_codon	3584597	3584599	.	-	0	transcript_id "Ledus.S2G048300.t1"; gene_id "Ledus.S2G048300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1233.t1 is derived from g8094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8769150	8771201	.	-	.	Ledus.S2G111500
Ledus.S2	AUGUSTUS	transcript	8769150	8771201	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	stop_codon	8769147	8769149	.	-	0	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	CDS	8769150	8769221	0.99	-	0	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	exon	8769150	8769221	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	intron	8769222	8769312	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	CDS	8769313	8769387	1	-	0	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	exon	8769313	8769387	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	intron	8769388	8769545	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	CDS	8769546	8769614	1	-	0	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	exon	8769546	8769614	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	intron	8769615	8769747	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	CDS	8769748	8769861	1	-	0	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	exon	8769748	8769861	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	intron	8769862	8769992	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	CDS	8769993	8770088	1	-	0	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	exon	8769993	8770088	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	intron	8770089	8770301	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	CDS	8770302	8770426	0.58	-	2	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	exon	8770302	8770426	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	intron	8770427	8770500	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	CDS	8770501	8770663	0.66	-	0	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	exon	8770501	8770663	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	intron	8770664	8770799	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	CDS	8770800	8771201	0.99	-	0	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	exon	8770800	8771201	.	-	.	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
Ledus.S2	AUGUSTUS	start_codon	8771199	8771201	.	-	0	transcript_id "Ledus.S2G111500.t1"; gene_id "Ledus.S2G111500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4260.t1 is derived from g1696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15801346	15804018	.	-	.	Ledus.S1G168100
Ledus.S1	AUGUSTUS	transcript	15801346	15804018	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	stop_codon	15801343	15801345	.	-	0	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	CDS	15801346	15801663	1	-	0	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	exon	15801346	15801663	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	intron	15801664	15801757	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	CDS	15801758	15801844	1	-	0	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	exon	15801758	15801844	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	intron	15801845	15801941	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	CDS	15801942	15802022	1	-	0	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	exon	15801942	15802022	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	intron	15802023	15802110	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	CDS	15802111	15802263	1	-	0	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	exon	15802111	15802263	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	intron	15802264	15802374	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	CDS	15802375	15802431	0.99	-	0	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	exon	15802375	15802431	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	intron	15802432	15802524	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	CDS	15802525	15802771	0.99	-	1	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	exon	15802525	15802771	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	intron	15802772	15802874	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	CDS	15802875	15802990	1	-	0	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	exon	15802875	15802990	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	intron	15802991	15803075	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	CDS	15803076	15803227	1	-	2	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	exon	15803076	15803227	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	intron	15803228	15803295	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	CDS	15803296	15803485	1	-	0	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	exon	15803296	15803485	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	intron	15803486	15803583	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	CDS	15803584	15804018	1	-	0	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	exon	15803584	15804018	.	-	.	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
Ledus.S1	AUGUSTUS	start_codon	15804016	15804018	.	-	0	transcript_id "Ledus.S1G168100.t1"; gene_id "Ledus.S1G168100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12173.t1 is derived from g5792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10132803	10136505	.	-	.	Ledus.S4G132900
Ledus.S4	AUGUSTUS	transcript	10132803	10136505	.	-	.	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	stop_codon	10132800	10132802	.	-	0	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	CDS	10132803	10132858	0.53	-	2	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	exon	10132803	10132858	.	-	.	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	intron	10132859	10133029	.	-	.	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	CDS	10133030	10133197	0.56	-	2	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	exon	10133030	10133197	.	-	.	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	intron	10133198	10133291	.	-	.	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	CDS	10133292	10133553	0.9	-	0	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	exon	10133292	10133553	.	-	.	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	intron	10133554	10133683	.	-	.	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	CDS	10133684	10133846	0.81	-	1	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	exon	10133684	10133846	.	-	.	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	intron	10133847	10134102	.	-	.	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	CDS	10134103	10136327	0.53	-	0	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	exon	10134103	10136327	.	-	.	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	intron	10136328	10136448	.	-	.	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	CDS	10136449	10136505	0.77	-	0	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	exon	10136449	10136505	.	-	.	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
Ledus.S4	AUGUSTUS	start_codon	10136503	10136505	.	-	0	transcript_id "Ledus.S4G132900.t1"; gene_id "Ledus.S4G132900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5096.t1 is derived from g2535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21575618	21576046	.	+	.	Ledus.S1G251700
Ledus.S1	AUGUSTUS	transcript	21575618	21576046	.	+	.	transcript_id "Ledus.S1G251700.t1"; gene_id "Ledus.S1G251700"
Ledus.S1	AUGUSTUS	start_codon	21575618	21575620	.	+	0	transcript_id "Ledus.S1G251700.t1"; gene_id "Ledus.S1G251700"
Ledus.S1	AUGUSTUS	CDS	21575618	21576046	0.92	+	0	transcript_id "Ledus.S1G251700.t1"; gene_id "Ledus.S1G251700"
Ledus.S1	AUGUSTUS	exon	21575618	21576046	.	+	.	transcript_id "Ledus.S1G251700.t1"; gene_id "Ledus.S1G251700"
Ledus.S1	AUGUSTUS	stop_codon	21576047	21576049	.	+	0	transcript_id "Ledus.S1G251700.t1"; gene_id "Ledus.S1G251700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9637.t1 is derived from g10667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8558290	8559169	.	-	.	Ledus.S3G111400
Ledus.S3	AUGUSTUS	transcript	8558290	8559169	.	-	.	transcript_id "Ledus.S3G111400.t1"; gene_id "Ledus.S3G111400"
Ledus.S3	AUGUSTUS	stop_codon	8558287	8558289	.	-	0	transcript_id "Ledus.S3G111400.t1"; gene_id "Ledus.S3G111400"
Ledus.S3	AUGUSTUS	CDS	8558290	8558838	0.98	-	0	transcript_id "Ledus.S3G111400.t1"; gene_id "Ledus.S3G111400"
Ledus.S3	AUGUSTUS	exon	8558290	8558838	.	-	.	transcript_id "Ledus.S3G111400.t1"; gene_id "Ledus.S3G111400"
Ledus.S3	AUGUSTUS	intron	8558839	8558919	.	-	.	transcript_id "Ledus.S3G111400.t1"; gene_id "Ledus.S3G111400"
Ledus.S3	AUGUSTUS	CDS	8558920	8559071	0.73	-	2	transcript_id "Ledus.S3G111400.t1"; gene_id "Ledus.S3G111400"
Ledus.S3	AUGUSTUS	exon	8558920	8559071	.	-	.	transcript_id "Ledus.S3G111400.t1"; gene_id "Ledus.S3G111400"
Ledus.S3	AUGUSTUS	intron	8559072	8559156	.	-	.	transcript_id "Ledus.S3G111400.t1"; gene_id "Ledus.S3G111400"
Ledus.S3	AUGUSTUS	CDS	8559157	8559169	0.72	-	0	transcript_id "Ledus.S3G111400.t1"; gene_id "Ledus.S3G111400"
Ledus.S3	AUGUSTUS	exon	8559157	8559169	.	-	.	transcript_id "Ledus.S3G111400.t1"; gene_id "Ledus.S3G111400"
Ledus.S3	AUGUSTUS	start_codon	8559167	8559169	.	-	0	transcript_id "Ledus.S3G111400.t1"; gene_id "Ledus.S3G111400"
# This transcript jg1055.t1 is derived from g7915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7026423	7027964	.	-	.	Ledus.S2G093600
Ledus.S2	AUGUSTUS	transcript	7026423	7027964	.	-	.	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	stop_codon	7026420	7026422	.	-	0	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	CDS	7026423	7026526	0.49	-	2	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	exon	7026423	7026526	.	-	.	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	intron	7026527	7026663	.	-	.	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	CDS	7026664	7026868	1	-	0	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	exon	7026664	7026868	.	-	.	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	intron	7026869	7026939	.	-	.	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	CDS	7026940	7027094	0.4	-	2	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	exon	7026940	7027094	.	-	.	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	intron	7027095	7027264	.	-	.	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	CDS	7027265	7027463	0.98	-	0	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	exon	7027265	7027463	.	-	.	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	intron	7027464	7027562	.	-	.	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	CDS	7027563	7027648	1	-	2	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	exon	7027563	7027648	.	-	.	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	intron	7027649	7027933	.	-	.	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	CDS	7027934	7027964	1	-	0	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	exon	7027934	7027964	.	-	.	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
Ledus.S2	AUGUSTUS	start_codon	7027962	7027964	.	-	0	transcript_id "Ledus.S2G093600.t1"; gene_id "Ledus.S2G093600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2724.t1 is derived from g158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2534290	2534588	.	-	.	Ledus.S1G014500
Ledus.S1	AUGUSTUS	transcript	2534290	2534588	.	-	.	transcript_id "Ledus.S1G014500.t1"; gene_id "Ledus.S1G014500"
Ledus.S1	AUGUSTUS	stop_codon	2534287	2534289	.	-	0	transcript_id "Ledus.S1G014500.t1"; gene_id "Ledus.S1G014500"
Ledus.S1	AUGUSTUS	CDS	2534290	2534304	0.78	-	0	transcript_id "Ledus.S1G014500.t1"; gene_id "Ledus.S1G014500"
Ledus.S1	AUGUSTUS	exon	2534290	2534304	.	-	.	transcript_id "Ledus.S1G014500.t1"; gene_id "Ledus.S1G014500"
Ledus.S1	AUGUSTUS	intron	2534305	2534378	.	-	.	transcript_id "Ledus.S1G014500.t1"; gene_id "Ledus.S1G014500"
Ledus.S1	AUGUSTUS	CDS	2534379	2534588	0.77	-	0	transcript_id "Ledus.S1G014500.t1"; gene_id "Ledus.S1G014500"
Ledus.S1	AUGUSTUS	exon	2534379	2534588	.	-	.	transcript_id "Ledus.S1G014500.t1"; gene_id "Ledus.S1G014500"
Ledus.S1	AUGUSTUS	start_codon	2534586	2534588	.	-	0	transcript_id "Ledus.S1G014500.t1"; gene_id "Ledus.S1G014500"
# This transcript jg10446.t2 is derived from g11476.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10447.t1 is derived from g11477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15206105	15206469	.	-	.	Ledus.S3G192400
Ledus.S3	AUGUSTUS	transcript	15206105	15206469	.	-	.	transcript_id "Ledus.S3G192400.t1"; gene_id "Ledus.S3G192400"
Ledus.S3	AUGUSTUS	stop_codon	15206102	15206104	.	-	0	transcript_id "Ledus.S3G192400.t1"; gene_id "Ledus.S3G192400"
Ledus.S3	AUGUSTUS	CDS	15206105	15206196	0.79	-	2	transcript_id "Ledus.S3G192400.t1"; gene_id "Ledus.S3G192400"
Ledus.S3	AUGUSTUS	exon	15206105	15206196	.	-	.	transcript_id "Ledus.S3G192400.t1"; gene_id "Ledus.S3G192400"
Ledus.S3	AUGUSTUS	intron	15206197	15206345	.	-	.	transcript_id "Ledus.S3G192400.t1"; gene_id "Ledus.S3G192400"
Ledus.S3	AUGUSTUS	CDS	15206346	15206469	0.78	-	0	transcript_id "Ledus.S3G192400.t1"; gene_id "Ledus.S3G192400"
Ledus.S3	AUGUSTUS	exon	15206346	15206469	.	-	.	transcript_id "Ledus.S3G192400.t1"; gene_id "Ledus.S3G192400"
Ledus.S3	AUGUSTUS	start_codon	15206467	15206469	.	-	0	transcript_id "Ledus.S3G192400.t1"; gene_id "Ledus.S3G192400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9070.t1 is derived from g10100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4348843	4351773	.	+	.	Ledus.S3G054700
Ledus.S3	AUGUSTUS	transcript	4348843	4351773	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	start_codon	4348843	4348845	.	+	0	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	CDS	4348843	4349964	0.96	+	0	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	exon	4348843	4349964	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	intron	4349965	4350097	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	CDS	4350098	4350319	1	+	0	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	exon	4350098	4350319	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	intron	4350320	4350412	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	CDS	4350413	4350520	1	+	0	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	exon	4350413	4350520	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	intron	4350521	4350618	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	CDS	4350619	4350810	1	+	0	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	exon	4350619	4350810	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	intron	4350811	4350879	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	CDS	4350880	4351128	1	+	0	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	exon	4350880	4351128	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	intron	4351129	4351204	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	CDS	4351205	4351456	1	+	0	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	exon	4351205	4351456	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	intron	4351457	4351536	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	CDS	4351537	4351773	1	+	0	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	exon	4351537	4351773	.	+	.	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
Ledus.S3	AUGUSTUS	stop_codon	4351774	4351776	.	+	0	transcript_id "Ledus.S3G054700.t1"; gene_id "Ledus.S3G054700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8898.t1 is derived from g9928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2936421	2938907	.	-	.	Ledus.S3G037500
Ledus.S3	AUGUSTUS	transcript	2936421	2938907	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	stop_codon	2936418	2936420	.	-	0	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	CDS	2936421	2936618	1	-	0	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	exon	2936421	2936618	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	intron	2936619	2936694	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	CDS	2936695	2936964	0.99	-	0	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	exon	2936695	2936964	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	intron	2936965	2937074	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	CDS	2937075	2937311	0.98	-	0	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	exon	2937075	2937311	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	intron	2937312	2937406	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	CDS	2937407	2937553	1	-	0	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	exon	2937407	2937553	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	intron	2937554	2937658	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	CDS	2937659	2938491	0.83	-	2	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	exon	2937659	2938491	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	intron	2938492	2938571	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	CDS	2938572	2938658	0.82	-	2	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	exon	2938572	2938658	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	intron	2938659	2938795	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	CDS	2938796	2938907	0.77	-	0	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	exon	2938796	2938907	.	-	.	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
Ledus.S3	AUGUSTUS	start_codon	2938905	2938907	.	-	0	transcript_id "Ledus.S3G037500.t1"; gene_id "Ledus.S3G037500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5425.t1 is derived from g2864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24095653	24099880	.	+	.	Ledus.S1G284600
Ledus.S1	AUGUSTUS	transcript	24095653	24099880	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	start_codon	24095653	24095655	.	+	0	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24095653	24095716	0.45	+	0	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24095653	24095716	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24095717	24095851	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24095852	24096132	0.99	+	2	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24095852	24096132	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24096133	24096222	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24096223	24096491	1	+	0	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24096223	24096491	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24096492	24096566	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24096567	24096821	1	+	1	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24096567	24096821	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24096822	24096896	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24096897	24097141	1	+	1	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24096897	24097141	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24097142	24097226	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24097227	24097365	1	+	2	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24097227	24097365	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24097366	24097442	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24097443	24097514	1	+	1	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24097443	24097514	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24097515	24097600	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24097601	24097666	1	+	1	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24097601	24097666	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24097667	24097754	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24097755	24097835	1	+	1	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24097755	24097835	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24097836	24097936	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24097937	24098008	0.96	+	1	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24097937	24098008	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24098009	24098094	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24098095	24098327	1	+	1	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24098095	24098327	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24098328	24098407	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24098408	24098610	1	+	2	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24098408	24098610	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24098611	24098683	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24098684	24098816	1	+	0	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24098684	24098816	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24098817	24098912	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24098913	24098987	1	+	2	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24098913	24098987	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24098988	24099075	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24099076	24099271	1	+	2	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24099076	24099271	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24099272	24099346	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24099347	24099491	1	+	1	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24099347	24099491	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24099492	24099568	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24099569	24099880	0.96	+	0	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24099569	24099880	.	+	.	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	stop_codon	24099881	24099883	.	+	0	transcript_id "Ledus.S1G284600.t1"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	transcript	24095653	24099880	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	start_codon	24095653	24095655	.	+	0	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24095653	24095716	0.43	+	0	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24095653	24095716	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24095717	24095851	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24095852	24096132	1	+	2	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24095852	24096132	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24096133	24096222	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24096223	24096491	1	+	0	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24096223	24096491	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24096492	24096566	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24096567	24096821	0.99	+	1	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24096567	24096821	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24096822	24096896	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24096897	24097141	1	+	1	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24096897	24097141	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24097142	24097226	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24097227	24097365	1	+	2	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24097227	24097365	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24097366	24097442	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24097443	24097514	1	+	1	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24097443	24097514	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24097515	24097600	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24097601	24097666	1	+	1	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24097601	24097666	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24097667	24097754	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24097755	24097835	0.99	+	1	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24097755	24097835	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24097836	24097936	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24097937	24098008	0.97	+	1	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24097937	24098008	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24098009	24098094	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24098095	24098327	1	+	1	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24098095	24098327	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24098328	24098407	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24098408	24098610	1	+	2	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24098408	24098610	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24098611	24098683	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24098684	24098816	1	+	0	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24098684	24098816	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24098817	24098909	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24098910	24098987	1	+	2	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24098910	24098987	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24098988	24099075	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24099076	24099271	1	+	2	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24099076	24099271	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24099272	24099346	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24099347	24099491	1	+	1	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24099347	24099491	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	intron	24099492	24099568	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	CDS	24099569	24099880	0.94	+	0	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	exon	24099569	24099880	.	+	.	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
Ledus.S1	AUGUSTUS	stop_codon	24099881	24099883	.	+	0	transcript_id "Ledus.S1G284600.t2"; gene_id "Ledus.S1G284600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12292.t1 is derived from g5912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11062645	11066885	.	-	.	Ledus.S4G144800
Ledus.S4	AUGUSTUS	transcript	11062645	11066885	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	stop_codon	11062642	11062644	.	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11062645	11062731	0.67	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11062645	11062731	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11062732	11062804	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11062805	11062907	1	-	1	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11062805	11062907	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11062908	11062990	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11062991	11063052	1	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11062991	11063052	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11063053	11063139	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11063140	11063197	1	-	1	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11063140	11063197	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11063198	11063286	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11063287	11063367	1	-	1	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11063287	11063367	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11063368	11063468	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11063469	11063539	0.98	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11063469	11063539	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11063540	11063653	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11063654	11063735	0.47	-	1	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11063654	11063735	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11063736	11063841	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11063842	11063964	0.99	-	1	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11063842	11063964	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11063965	11064085	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11064086	11064192	1	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11064086	11064192	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11064193	11064285	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11064286	11064357	1	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11064286	11064357	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11064358	11064443	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11064444	11064497	1	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11064444	11064497	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11064498	11064613	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11064614	11064665	1	-	1	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11064614	11064665	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11064666	11064765	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11064766	11064860	1	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11064766	11064860	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11064861	11064958	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11064959	11065015	1	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11064959	11065015	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11065016	11065148	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11065149	11065193	1	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11065149	11065193	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11065194	11065295	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11065296	11065403	1	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11065296	11065403	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11065404	11065568	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11065569	11065634	1	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11065569	11065634	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11065635	11065858	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11065859	11065969	1	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11065859	11065969	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11065970	11066085	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11066086	11066283	1	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11066086	11066283	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11066284	11066419	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11066420	11066500	1	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11066420	11066500	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11066501	11066703	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11066704	11066743	1	-	1	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11066704	11066743	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	intron	11066744	11066832	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	CDS	11066833	11066885	0.97	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	exon	11066833	11066885	.	-	.	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
Ledus.S4	AUGUSTUS	start_codon	11066883	11066885	.	-	0	transcript_id "Ledus.S4G144800.t1"; gene_id "Ledus.S4G144800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2886.t1 is derived from g321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4398622	4400085	.	-	.	Ledus.S1G030700
Ledus.S1	AUGUSTUS	transcript	4398622	4400085	.	-	.	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	stop_codon	4398619	4398621	.	-	0	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	CDS	4398622	4399158	0.72	-	0	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	exon	4398622	4399158	.	-	.	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	intron	4399159	4399266	.	-	.	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	CDS	4399267	4399685	0.75	-	2	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	exon	4399267	4399685	.	-	.	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	intron	4399686	4399789	.	-	.	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	CDS	4399790	4399926	1	-	1	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	exon	4399790	4399926	.	-	.	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	intron	4399927	4400029	.	-	.	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	CDS	4400030	4400085	1	-	0	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	exon	4400030	4400085	.	-	.	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
Ledus.S1	AUGUSTUS	start_codon	4400083	4400085	.	-	0	transcript_id "Ledus.S1G030700.t1"; gene_id "Ledus.S1G030700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5707.t1 is derived from g3146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26059416	26063153	.	+	.	Ledus.S1G312800
Ledus.S1	AUGUSTUS	transcript	26059416	26063153	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	start_codon	26059416	26059418	.	+	0	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	CDS	26059416	26059562	0.51	+	0	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	exon	26059416	26059562	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	intron	26059563	26059680	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	CDS	26059681	26059693	0.99	+	0	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	exon	26059681	26059693	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	intron	26059694	26059895	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	CDS	26059896	26060079	1	+	2	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	exon	26059896	26060079	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	intron	26060080	26060258	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	CDS	26060259	26060411	1	+	1	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	exon	26060259	26060411	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	intron	26060412	26060526	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	CDS	26060527	26060590	1	+	1	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	exon	26060527	26060590	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	intron	26060591	26060682	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	CDS	26060683	26060892	0.99	+	0	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	exon	26060683	26060892	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	intron	26060893	26060998	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	CDS	26060999	26061193	0.89	+	0	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	exon	26060999	26061193	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	intron	26061194	26061300	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	CDS	26061301	26061599	0.89	+	0	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	exon	26061301	26061599	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	intron	26061600	26061709	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	CDS	26061710	26061989	0.98	+	1	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	exon	26061710	26061989	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	intron	26061990	26062130	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	CDS	26062131	26062409	0.99	+	0	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	exon	26062131	26062409	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	intron	26062410	26062525	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	CDS	26062526	26062759	1	+	0	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	exon	26062526	26062759	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	intron	26062760	26062982	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	CDS	26062983	26063153	0.99	+	0	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	exon	26062983	26063153	.	+	.	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
Ledus.S1	AUGUSTUS	stop_codon	26063154	26063156	.	+	0	transcript_id "Ledus.S1G312800.t1"; gene_id "Ledus.S1G312800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2999.t1 is derived from g434.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5208490	5219206	.	+	.	Ledus.S1G042000
Ledus.S1	AUGUSTUS	transcript	5208490	5219206	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	start_codon	5208490	5208492	.	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5208490	5208697	0.64	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5208490	5208697	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5208698	5209377	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5209378	5209872	0.98	+	2	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5209378	5209872	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5209873	5210077	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5210078	5213016	0.9	+	2	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5210078	5213016	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5213017	5213134	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5213135	5213265	0.39	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5213135	5213265	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5213266	5213493	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5213494	5213578	0.41	+	1	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5213494	5213578	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5213579	5213765	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5213766	5213793	0.9	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5213766	5213793	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5213794	5213891	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5213892	5213995	0.51	+	2	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5213892	5213995	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5213996	5214196	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5214197	5214266	0.99	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5214197	5214266	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5214267	5214395	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5214396	5214514	0.98	+	2	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5214396	5214514	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5214515	5214656	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5214657	5214789	0.66	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5214657	5214789	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5214790	5214894	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5214895	5214995	0.66	+	2	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5214895	5214995	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5214996	5215121	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5215122	5215213	0.41	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5215122	5215213	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5215214	5215377	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5215378	5215866	0.39	+	1	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5215378	5215866	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5215867	5216011	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5216012	5216144	1	+	1	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5216012	5216144	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5216145	5216257	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5216258	5216371	0.84	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5216258	5216371	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5216372	5216567	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5216568	5216638	0.95	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5216568	5216638	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5216639	5216741	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5216742	5217048	0.34	+	1	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5216742	5217048	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5217049	5217156	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5217157	5217264	0.95	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5217157	5217264	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5217265	5217379	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5217380	5217538	1	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5217380	5217538	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5217539	5217662	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5217663	5217775	0.89	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5217663	5217775	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5217776	5218058	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5218059	5218210	0.79	+	1	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5218059	5218210	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5218211	5218342	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5218343	5218828	0.82	+	2	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5218343	5218828	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	intron	5218829	5218904	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	CDS	5218905	5219206	1	+	2	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	exon	5218905	5219206	.	+	.	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
Ledus.S1	AUGUSTUS	stop_codon	5219207	5219209	.	+	0	transcript_id "Ledus.S1G042000.t1"; gene_id "Ledus.S1G042000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11958.t1 is derived from g5577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8021276	8021488	.	-	.	Ledus.S4G111400
Ledus.S4	AUGUSTUS	transcript	8021276	8021488	.	-	.	transcript_id "Ledus.S4G111400.t1"; gene_id "Ledus.S4G111400"
Ledus.S4	AUGUSTUS	stop_codon	8021273	8021275	.	-	0	transcript_id "Ledus.S4G111400.t1"; gene_id "Ledus.S4G111400"
Ledus.S4	AUGUSTUS	CDS	8021276	8021488	0.99	-	0	transcript_id "Ledus.S4G111400.t1"; gene_id "Ledus.S4G111400"
Ledus.S4	AUGUSTUS	exon	8021276	8021488	.	-	.	transcript_id "Ledus.S4G111400.t1"; gene_id "Ledus.S4G111400"
Ledus.S4	AUGUSTUS	start_codon	8021486	8021488	.	-	0	transcript_id "Ledus.S4G111400.t1"; gene_id "Ledus.S4G111400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4792.t1 is derived from g2230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19794338	19797140	.	-	.	Ledus.S1G221300
Ledus.S1	AUGUSTUS	transcript	19794338	19797140	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	stop_codon	19794335	19794337	.	-	0	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	CDS	19794338	19794460	0.98	-	0	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	exon	19794338	19794460	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	intron	19794461	19794574	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	CDS	19794575	19794658	1	-	0	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	exon	19794575	19794658	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	intron	19794659	19794748	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	CDS	19794749	19794874	1	-	0	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	exon	19794749	19794874	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	intron	19794875	19794972	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	CDS	19794973	19795092	0.9	-	0	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	exon	19794973	19795092	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	intron	19795093	19795208	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	CDS	19795209	19795316	0.64	-	0	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	exon	19795209	19795316	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	intron	19795317	19795407	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	CDS	19795408	19795560	1	-	0	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	exon	19795408	19795560	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	intron	19795561	19795654	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	CDS	19795655	19795750	1	-	0	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	exon	19795655	19795750	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	intron	19795751	19795888	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	CDS	19795889	19795973	1	-	1	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	exon	19795889	19795973	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	intron	19795974	19796106	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	CDS	19796107	19797140	0.38	-	0	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	exon	19796107	19797140	.	-	.	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
Ledus.S1	AUGUSTUS	start_codon	19797138	19797140	.	-	0	transcript_id "Ledus.S1G221300.t1"; gene_id "Ledus.S1G221300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12939.t1 is derived from g6749.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	14994	15245	.	+	.	Ledus.S6G000100
Ledus.S6	AUGUSTUS	transcript	14994	15245	.	+	.	transcript_id "Ledus.S6G000100.t1"; gene_id "Ledus.S6G000100"
Ledus.S6	AUGUSTUS	start_codon	14994	14996	.	+	0	transcript_id "Ledus.S6G000100.t1"; gene_id "Ledus.S6G000100"
Ledus.S6	AUGUSTUS	CDS	14994	15245	0.86	+	0	transcript_id "Ledus.S6G000100.t1"; gene_id "Ledus.S6G000100"
Ledus.S6	AUGUSTUS	exon	14994	15245	.	+	.	transcript_id "Ledus.S6G000100.t1"; gene_id "Ledus.S6G000100"
Ledus.S6	AUGUSTUS	stop_codon	15246	15248	.	+	0	transcript_id "Ledus.S6G000100.t1"; gene_id "Ledus.S6G000100"
# This transcript jg1435.t2 is derived from g8296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1436.t1 is derived from g8297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10082331	10085095	.	-	.	Ledus.S2G131800
Ledus.S2	AUGUSTUS	transcript	10082331	10085095	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	stop_codon	10082328	10082330	.	-	0	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	CDS	10082331	10082354	1	-	0	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	exon	10082331	10082354	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	intron	10082355	10082515	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	CDS	10082516	10082694	1	-	2	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	exon	10082516	10082694	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	intron	10082695	10082835	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	CDS	10082836	10083015	1	-	2	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	exon	10082836	10083015	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	intron	10083016	10083195	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	CDS	10083196	10083249	1	-	2	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	exon	10083196	10083249	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	intron	10083250	10083393	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	CDS	10083394	10083444	0.99	-	2	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	exon	10083394	10083444	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	intron	10083445	10083558	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	CDS	10083559	10083756	0.59	-	2	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	exon	10083559	10083756	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	intron	10083757	10083859	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	CDS	10083860	10084000	0.57	-	2	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	exon	10083860	10084000	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	intron	10084001	10084183	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	CDS	10084184	10084281	1	-	1	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	exon	10084184	10084281	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	intron	10084282	10084400	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	CDS	10084401	10084527	1	-	2	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	exon	10084401	10084527	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	intron	10084528	10084689	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	CDS	10084690	10085095	0.77	-	0	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	exon	10084690	10085095	.	-	.	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
Ledus.S2	AUGUSTUS	start_codon	10085093	10085095	.	-	0	transcript_id "Ledus.S2G131800.t1"; gene_id "Ledus.S2G131800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10468.t1 is derived from g11498.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15454857	15458823	.	+	.	Ledus.S3G194500
Ledus.S3	AUGUSTUS	transcript	15454857	15458823	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	start_codon	15454857	15454859	.	+	0	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15454857	15454999	0.62	+	0	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15454857	15454999	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	intron	15455000	15455076	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15455077	15455215	1	+	1	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15455077	15455215	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	intron	15455216	15455293	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15455294	15455521	0.98	+	0	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15455294	15455521	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	intron	15455522	15455613	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15455614	15455672	1	+	0	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15455614	15455672	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	intron	15455673	15455757	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15455758	15455806	1	+	1	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15455758	15455806	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	intron	15455807	15455906	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15455907	15456137	0.93	+	0	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15455907	15456137	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	intron	15456138	15456228	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15456229	15456398	0.94	+	0	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15456229	15456398	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	intron	15456399	15456515	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15456516	15456720	0.98	+	1	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15456516	15456720	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	intron	15456721	15456821	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15456822	15457069	0.61	+	0	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15456822	15457069	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	intron	15457070	15457191	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15457192	15457570	1	+	1	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15457192	15457570	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	intron	15457571	15457671	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15457672	15457783	0.98	+	0	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15457672	15457783	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	intron	15457784	15457862	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15457863	15457978	1	+	2	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15457863	15457978	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	intron	15457979	15458058	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	CDS	15458059	15458823	0.95	+	0	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	exon	15458059	15458823	.	+	.	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
Ledus.S3	AUGUSTUS	stop_codon	15458824	15458826	.	+	0	transcript_id "Ledus.S3G194500.t1"; gene_id "Ledus.S3G194500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2811.t1 is derived from g245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3899036	3902103	.	-	.	Ledus.S1G023200
Ledus.S1	AUGUSTUS	transcript	3899036	3902103	.	-	.	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	stop_codon	3899033	3899035	.	-	0	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	CDS	3899036	3900367	1	-	0	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	exon	3899036	3900367	.	-	.	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	intron	3900368	3900454	.	-	.	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	CDS	3900455	3900687	1	-	2	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	exon	3900455	3900687	.	-	.	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	intron	3900688	3900770	.	-	.	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	CDS	3900771	3900911	0.77	-	2	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	exon	3900771	3900911	.	-	.	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	intron	3900912	3901025	.	-	.	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	CDS	3901026	3901285	0.77	-	1	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	exon	3901026	3901285	.	-	.	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	intron	3901286	3901387	.	-	.	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	CDS	3901388	3902103	0.7	-	0	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	exon	3901388	3902103	.	-	.	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
Ledus.S1	AUGUSTUS	start_codon	3902101	3902103	.	-	0	transcript_id "Ledus.S1G023200.t1"; gene_id "Ledus.S1G023200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2819.t1 is derived from g253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3927388	3927783	.	-	.	Ledus.S1G024000
Ledus.S1	AUGUSTUS	transcript	3927388	3927783	.	-	.	transcript_id "Ledus.S1G024000.t1"; gene_id "Ledus.S1G024000"
Ledus.S1	AUGUSTUS	stop_codon	3927385	3927387	.	-	0	transcript_id "Ledus.S1G024000.t1"; gene_id "Ledus.S1G024000"
Ledus.S1	AUGUSTUS	CDS	3927388	3927783	0.83	-	0	transcript_id "Ledus.S1G024000.t1"; gene_id "Ledus.S1G024000"
Ledus.S1	AUGUSTUS	exon	3927388	3927783	.	-	.	transcript_id "Ledus.S1G024000.t1"; gene_id "Ledus.S1G024000"
Ledus.S1	AUGUSTUS	start_codon	3927781	3927783	.	-	0	transcript_id "Ledus.S1G024000.t1"; gene_id "Ledus.S1G024000"
# This transcript jg6835.t2 is derived from g4279.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6836.t1 is derived from g4280.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34565204	34566800	.	+	.	Ledus.S1G425700
Ledus.S1	AUGUSTUS	transcript	34565204	34566800	.	+	.	transcript_id "Ledus.S1G425700.t1"; gene_id "Ledus.S1G425700"
Ledus.S1	AUGUSTUS	start_codon	34565204	34565206	.	+	0	transcript_id "Ledus.S1G425700.t1"; gene_id "Ledus.S1G425700"
Ledus.S1	AUGUSTUS	CDS	34565204	34566379	0.89	+	0	transcript_id "Ledus.S1G425700.t1"; gene_id "Ledus.S1G425700"
Ledus.S1	AUGUSTUS	exon	34565204	34566379	.	+	.	transcript_id "Ledus.S1G425700.t1"; gene_id "Ledus.S1G425700"
Ledus.S1	AUGUSTUS	intron	34566380	34566485	.	+	.	transcript_id "Ledus.S1G425700.t1"; gene_id "Ledus.S1G425700"
Ledus.S1	AUGUSTUS	CDS	34566486	34566800	0.82	+	0	transcript_id "Ledus.S1G425700.t1"; gene_id "Ledus.S1G425700"
Ledus.S1	AUGUSTUS	exon	34566486	34566800	.	+	.	transcript_id "Ledus.S1G425700.t1"; gene_id "Ledus.S1G425700"
Ledus.S1	AUGUSTUS	stop_codon	34566801	34566803	.	+	0	transcript_id "Ledus.S1G425700.t1"; gene_id "Ledus.S1G425700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg777.t1 is derived from g7638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4919353	4920889	.	+	.	Ledus.S2G065900
Ledus.S2	AUGUSTUS	transcript	4919353	4920889	.	+	.	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	start_codon	4919353	4919355	.	+	0	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	CDS	4919353	4919495	0.99	+	0	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	exon	4919353	4919495	.	+	.	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	intron	4919496	4919597	.	+	.	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	CDS	4919598	4919829	1	+	1	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	exon	4919598	4919829	.	+	.	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	intron	4919830	4919972	.	+	.	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	CDS	4919973	4920119	1	+	0	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	exon	4919973	4920119	.	+	.	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	intron	4920120	4920261	.	+	.	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	CDS	4920262	4920434	1	+	0	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	exon	4920262	4920434	.	+	.	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	intron	4920435	4920534	.	+	.	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	CDS	4920535	4920889	0.98	+	1	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	exon	4920535	4920889	.	+	.	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
Ledus.S2	AUGUSTUS	stop_codon	4920890	4920892	.	+	0	transcript_id "Ledus.S2G065900.t1"; gene_id "Ledus.S2G065900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2198.t1 is derived from g9061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15908637	15909128	.	+	.	Ledus.S2G208000
Ledus.S2	AUGUSTUS	transcript	15908637	15909128	.	+	.	transcript_id "Ledus.S2G208000.t1"; gene_id "Ledus.S2G208000"
Ledus.S2	AUGUSTUS	start_codon	15908637	15908639	.	+	0	transcript_id "Ledus.S2G208000.t1"; gene_id "Ledus.S2G208000"
Ledus.S2	AUGUSTUS	CDS	15908637	15909128	0.44	+	0	transcript_id "Ledus.S2G208000.t1"; gene_id "Ledus.S2G208000"
Ledus.S2	AUGUSTUS	exon	15908637	15909128	.	+	.	transcript_id "Ledus.S2G208000.t1"; gene_id "Ledus.S2G208000"
Ledus.S2	AUGUSTUS	stop_codon	15909129	15909131	.	+	0	transcript_id "Ledus.S2G208000.t1"; gene_id "Ledus.S2G208000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6107.t1 is derived from g3550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28938217	28941478	.	-	.	Ledus.S1G352800
Ledus.S1	AUGUSTUS	transcript	28938217	28941478	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	stop_codon	28938214	28938216	.	-	0	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28938217	28938291	0.96	-	0	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28938217	28938291	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	intron	28938292	28938378	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28938379	28938468	0.99	-	0	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28938379	28938468	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	intron	28938469	28938639	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28938640	28938744	0.52	-	0	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28938640	28938744	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	intron	28938745	28938848	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28938849	28938946	0.95	-	2	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28938849	28938946	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	intron	28938947	28939100	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28939101	28939152	1	-	0	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28939101	28939152	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	intron	28939153	28939272	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28939273	28939354	1	-	1	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28939273	28939354	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	intron	28939355	28939471	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28939472	28939599	1	-	0	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28939472	28939599	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	intron	28939600	28939871	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28939872	28939934	1	-	0	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28939872	28939934	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	intron	28939935	28940015	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28940016	28940129	1	-	0	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28940016	28940129	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	intron	28940130	28940254	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28940255	28940296	1	-	0	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28940255	28940296	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	intron	28940297	28940426	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28940427	28940556	1	-	1	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28940427	28940556	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	intron	28940557	28940674	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28940675	28940786	1	-	2	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28940675	28940786	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	intron	28940787	28941345	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	CDS	28941346	28941478	0.92	-	0	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	exon	28941346	28941478	.	-	.	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
Ledus.S1	AUGUSTUS	start_codon	28941476	28941478	.	-	0	transcript_id "Ledus.S1G352800.t1"; gene_id "Ledus.S1G352800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2776.t1 is derived from g210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3441169	3441603	.	+	.	Ledus.S1G019700
Ledus.S1	AUGUSTUS	transcript	3441169	3441603	.	+	.	transcript_id "Ledus.S1G019700.t1"; gene_id "Ledus.S1G019700"
Ledus.S1	AUGUSTUS	start_codon	3441169	3441171	.	+	0	transcript_id "Ledus.S1G019700.t1"; gene_id "Ledus.S1G019700"
Ledus.S1	AUGUSTUS	CDS	3441169	3441603	0.89	+	0	transcript_id "Ledus.S1G019700.t1"; gene_id "Ledus.S1G019700"
Ledus.S1	AUGUSTUS	exon	3441169	3441603	.	+	.	transcript_id "Ledus.S1G019700.t1"; gene_id "Ledus.S1G019700"
Ledus.S1	AUGUSTUS	stop_codon	3441604	3441606	.	+	0	transcript_id "Ledus.S1G019700.t1"; gene_id "Ledus.S1G019700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg383.t1 is derived from g7244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2117807	2118193	.	+	.	Ledus.S2G026500
Ledus.S2	AUGUSTUS	transcript	2117807	2118193	.	+	.	transcript_id "Ledus.S2G026500.t1"; gene_id "Ledus.S2G026500"
Ledus.S2	AUGUSTUS	start_codon	2117807	2117809	.	+	0	transcript_id "Ledus.S2G026500.t1"; gene_id "Ledus.S2G026500"
Ledus.S2	AUGUSTUS	CDS	2117807	2118193	0.89	+	0	transcript_id "Ledus.S2G026500.t1"; gene_id "Ledus.S2G026500"
Ledus.S2	AUGUSTUS	exon	2117807	2118193	.	+	.	transcript_id "Ledus.S2G026500.t1"; gene_id "Ledus.S2G026500"
Ledus.S2	AUGUSTUS	stop_codon	2118194	2118196	.	+	0	transcript_id "Ledus.S2G026500.t1"; gene_id "Ledus.S2G026500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11970.t1 is derived from g5589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8158524	8160270	.	+	.	Ledus.S4G112600
Ledus.S4	AUGUSTUS	transcript	8158524	8160270	.	+	.	transcript_id "Ledus.S4G112600.t1"; gene_id "Ledus.S4G112600"
Ledus.S4	AUGUSTUS	start_codon	8158524	8158526	.	+	0	transcript_id "Ledus.S4G112600.t1"; gene_id "Ledus.S4G112600"
Ledus.S4	AUGUSTUS	CDS	8158524	8159906	0.96	+	0	transcript_id "Ledus.S4G112600.t1"; gene_id "Ledus.S4G112600"
Ledus.S4	AUGUSTUS	exon	8158524	8159906	.	+	.	transcript_id "Ledus.S4G112600.t1"; gene_id "Ledus.S4G112600"
Ledus.S4	AUGUSTUS	intron	8159907	8159997	.	+	.	transcript_id "Ledus.S4G112600.t1"; gene_id "Ledus.S4G112600"
Ledus.S4	AUGUSTUS	CDS	8159998	8160270	0.94	+	0	transcript_id "Ledus.S4G112600.t1"; gene_id "Ledus.S4G112600"
Ledus.S4	AUGUSTUS	exon	8159998	8160270	.	+	.	transcript_id "Ledus.S4G112600.t1"; gene_id "Ledus.S4G112600"
Ledus.S4	AUGUSTUS	stop_codon	8160271	8160273	.	+	0	transcript_id "Ledus.S4G112600.t1"; gene_id "Ledus.S4G112600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7995.t1 is derived from g12666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8388891	8389624	.	-	.	Ledus.S5G077300
Ledus.S5	AUGUSTUS	transcript	8388891	8389624	.	-	.	transcript_id "Ledus.S5G077300.t1"; gene_id "Ledus.S5G077300"
Ledus.S5	AUGUSTUS	stop_codon	8388888	8388890	.	-	0	transcript_id "Ledus.S5G077300.t1"; gene_id "Ledus.S5G077300"
Ledus.S5	AUGUSTUS	CDS	8388891	8389493	0.76	-	0	transcript_id "Ledus.S5G077300.t1"; gene_id "Ledus.S5G077300"
Ledus.S5	AUGUSTUS	exon	8388891	8389493	.	-	.	transcript_id "Ledus.S5G077300.t1"; gene_id "Ledus.S5G077300"
Ledus.S5	AUGUSTUS	intron	8389494	8389579	.	-	.	transcript_id "Ledus.S5G077300.t1"; gene_id "Ledus.S5G077300"
Ledus.S5	AUGUSTUS	CDS	8389580	8389624	0.77	-	0	transcript_id "Ledus.S5G077300.t1"; gene_id "Ledus.S5G077300"
Ledus.S5	AUGUSTUS	exon	8389580	8389624	.	-	.	transcript_id "Ledus.S5G077300.t1"; gene_id "Ledus.S5G077300"
Ledus.S5	AUGUSTUS	start_codon	8389622	8389624	.	-	0	transcript_id "Ledus.S5G077300.t1"; gene_id "Ledus.S5G077300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10973.t1 is derived from g4591.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	954613	955539	.	+	.	Ledus.S4G012900
Ledus.S4	AUGUSTUS	transcript	954613	955539	.	+	.	transcript_id "Ledus.S4G012900.t1"; gene_id "Ledus.S4G012900"
Ledus.S4	AUGUSTUS	start_codon	954613	954615	.	+	0	transcript_id "Ledus.S4G012900.t1"; gene_id "Ledus.S4G012900"
Ledus.S4	AUGUSTUS	CDS	954613	955539	0.95	+	0	transcript_id "Ledus.S4G012900.t1"; gene_id "Ledus.S4G012900"
Ledus.S4	AUGUSTUS	exon	954613	955539	.	+	.	transcript_id "Ledus.S4G012900.t1"; gene_id "Ledus.S4G012900"
Ledus.S4	AUGUSTUS	stop_codon	955540	955542	.	+	0	transcript_id "Ledus.S4G012900.t1"; gene_id "Ledus.S4G012900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11807.t1 is derived from g5426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6873133	6873526	.	+	.	Ledus.S4G096300
Ledus.S4	AUGUSTUS	transcript	6873133	6873526	.	+	.	transcript_id "Ledus.S4G096300.t1"; gene_id "Ledus.S4G096300"
Ledus.S4	AUGUSTUS	start_codon	6873133	6873135	.	+	0	transcript_id "Ledus.S4G096300.t1"; gene_id "Ledus.S4G096300"
Ledus.S4	AUGUSTUS	CDS	6873133	6873141	0.72	+	0	transcript_id "Ledus.S4G096300.t1"; gene_id "Ledus.S4G096300"
Ledus.S4	AUGUSTUS	exon	6873133	6873141	.	+	.	transcript_id "Ledus.S4G096300.t1"; gene_id "Ledus.S4G096300"
Ledus.S4	AUGUSTUS	intron	6873142	6873271	.	+	.	transcript_id "Ledus.S4G096300.t1"; gene_id "Ledus.S4G096300"
Ledus.S4	AUGUSTUS	CDS	6873272	6873526	0.72	+	0	transcript_id "Ledus.S4G096300.t1"; gene_id "Ledus.S4G096300"
Ledus.S4	AUGUSTUS	exon	6873272	6873526	.	+	.	transcript_id "Ledus.S4G096300.t1"; gene_id "Ledus.S4G096300"
Ledus.S4	AUGUSTUS	stop_codon	6873527	6873529	.	+	0	transcript_id "Ledus.S4G096300.t1"; gene_id "Ledus.S4G096300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5156.t1 is derived from g2595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22005870	22007892	.	+	.	Ledus.S1G257700
Ledus.S1	AUGUSTUS	transcript	22005870	22007892	.	+	.	transcript_id "Ledus.S1G257700.t1"; gene_id "Ledus.S1G257700"
Ledus.S1	AUGUSTUS	start_codon	22005870	22005872	.	+	0	transcript_id "Ledus.S1G257700.t1"; gene_id "Ledus.S1G257700"
Ledus.S1	AUGUSTUS	CDS	22005870	22006233	0.13	+	0	transcript_id "Ledus.S1G257700.t1"; gene_id "Ledus.S1G257700"
Ledus.S1	AUGUSTUS	exon	22005870	22006233	.	+	.	transcript_id "Ledus.S1G257700.t1"; gene_id "Ledus.S1G257700"
Ledus.S1	AUGUSTUS	intron	22006234	22006337	.	+	.	transcript_id "Ledus.S1G257700.t1"; gene_id "Ledus.S1G257700"
Ledus.S1	AUGUSTUS	CDS	22006338	22007734	0.27	+	2	transcript_id "Ledus.S1G257700.t1"; gene_id "Ledus.S1G257700"
Ledus.S1	AUGUSTUS	exon	22006338	22007734	.	+	.	transcript_id "Ledus.S1G257700.t1"; gene_id "Ledus.S1G257700"
Ledus.S1	AUGUSTUS	intron	22007735	22007823	.	+	.	transcript_id "Ledus.S1G257700.t1"; gene_id "Ledus.S1G257700"
Ledus.S1	AUGUSTUS	CDS	22007824	22007892	1	+	0	transcript_id "Ledus.S1G257700.t1"; gene_id "Ledus.S1G257700"
Ledus.S1	AUGUSTUS	exon	22007824	22007892	.	+	.	transcript_id "Ledus.S1G257700.t1"; gene_id "Ledus.S1G257700"
Ledus.S1	AUGUSTUS	stop_codon	22007893	22007895	.	+	0	transcript_id "Ledus.S1G257700.t1"; gene_id "Ledus.S1G257700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12321.t1 is derived from g5942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11197602	11198474	.	-	.	Ledus.S4G147700
Ledus.S4	AUGUSTUS	transcript	11197602	11198474	.	-	.	transcript_id "Ledus.S4G147700.t1"; gene_id "Ledus.S4G147700"
Ledus.S4	AUGUSTUS	stop_codon	11197599	11197601	.	-	0	transcript_id "Ledus.S4G147700.t1"; gene_id "Ledus.S4G147700"
Ledus.S4	AUGUSTUS	CDS	11197602	11198474	0.87	-	0	transcript_id "Ledus.S4G147700.t1"; gene_id "Ledus.S4G147700"
Ledus.S4	AUGUSTUS	exon	11197602	11198474	.	-	.	transcript_id "Ledus.S4G147700.t1"; gene_id "Ledus.S4G147700"
Ledus.S4	AUGUSTUS	start_codon	11198472	11198474	.	-	0	transcript_id "Ledus.S4G147700.t1"; gene_id "Ledus.S4G147700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3140.t1 is derived from g575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6232502	6234866	.	+	.	Ledus.S1G056100
Ledus.S1	AUGUSTUS	transcript	6232502	6234866	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	start_codon	6232502	6232504	.	+	0	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	CDS	6232502	6232545	0.94	+	0	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	exon	6232502	6232545	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	intron	6232546	6232627	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	CDS	6232628	6232706	1	+	1	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	exon	6232628	6232706	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	intron	6232707	6232851	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	CDS	6232852	6232931	1	+	0	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	exon	6232852	6232931	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	intron	6232932	6233039	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	CDS	6233040	6233156	1	+	1	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	exon	6233040	6233156	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	intron	6233157	6233305	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	CDS	6233306	6233375	1	+	1	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	exon	6233306	6233375	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	intron	6233376	6233494	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	CDS	6233495	6233568	1	+	0	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	exon	6233495	6233568	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	intron	6233569	6233693	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	CDS	6233694	6233814	1	+	1	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	exon	6233694	6233814	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	intron	6233815	6233915	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	CDS	6233916	6233978	1	+	0	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	exon	6233916	6233978	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	intron	6233979	6234208	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	CDS	6234209	6234268	1	+	0	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	exon	6234209	6234268	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	intron	6234269	6234352	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	CDS	6234353	6234478	0.8	+	0	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	exon	6234353	6234478	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	intron	6234479	6234587	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	CDS	6234588	6234677	0.99	+	0	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	exon	6234588	6234677	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	intron	6234678	6234758	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	CDS	6234759	6234866	1	+	0	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	exon	6234759	6234866	.	+	.	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
Ledus.S1	AUGUSTUS	stop_codon	6234867	6234869	.	+	0	transcript_id "Ledus.S1G056100.t1"; gene_id "Ledus.S1G056100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8586.t1 is derived from g9616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	413800	414129	.	+	.	Ledus.S3G006300
Ledus.S3	AUGUSTUS	transcript	413800	414129	.	+	.	transcript_id "Ledus.S3G006300.t1"; gene_id "Ledus.S3G006300"
Ledus.S3	AUGUSTUS	start_codon	413800	413802	.	+	0	transcript_id "Ledus.S3G006300.t1"; gene_id "Ledus.S3G006300"
Ledus.S3	AUGUSTUS	CDS	413800	414129	0.57	+	0	transcript_id "Ledus.S3G006300.t1"; gene_id "Ledus.S3G006300"
Ledus.S3	AUGUSTUS	exon	413800	414129	.	+	.	transcript_id "Ledus.S3G006300.t1"; gene_id "Ledus.S3G006300"
Ledus.S3	AUGUSTUS	stop_codon	414130	414132	.	+	0	transcript_id "Ledus.S3G006300.t1"; gene_id "Ledus.S3G006300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5719.t1 is derived from g3158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26218831	26220024	.	+	.	Ledus.S1G314000
Ledus.S1	AUGUSTUS	transcript	26218831	26220024	.	+	.	transcript_id "Ledus.S1G314000.t1"; gene_id "Ledus.S1G314000"
Ledus.S1	AUGUSTUS	start_codon	26218831	26218833	.	+	0	transcript_id "Ledus.S1G314000.t1"; gene_id "Ledus.S1G314000"
Ledus.S1	AUGUSTUS	CDS	26218831	26220024	0.97	+	0	transcript_id "Ledus.S1G314000.t1"; gene_id "Ledus.S1G314000"
Ledus.S1	AUGUSTUS	exon	26218831	26220024	.	+	.	transcript_id "Ledus.S1G314000.t1"; gene_id "Ledus.S1G314000"
Ledus.S1	AUGUSTUS	stop_codon	26220025	26220027	.	+	0	transcript_id "Ledus.S1G314000.t1"; gene_id "Ledus.S1G314000"
# This transcript jg5008.t2 is derived from g2446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5009.t1 is derived from g2447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21114764	21115459	.	-	.	Ledus.S1G243000
Ledus.S1	AUGUSTUS	transcript	21114764	21115459	.	-	.	transcript_id "Ledus.S1G243000.t1"; gene_id "Ledus.S1G243000"
Ledus.S1	AUGUSTUS	stop_codon	21114761	21114763	.	-	0	transcript_id "Ledus.S1G243000.t1"; gene_id "Ledus.S1G243000"
Ledus.S1	AUGUSTUS	CDS	21114764	21115459	0.8	-	0	transcript_id "Ledus.S1G243000.t1"; gene_id "Ledus.S1G243000"
Ledus.S1	AUGUSTUS	exon	21114764	21115459	.	-	.	transcript_id "Ledus.S1G243000.t1"; gene_id "Ledus.S1G243000"
Ledus.S1	AUGUSTUS	start_codon	21115457	21115459	.	-	0	transcript_id "Ledus.S1G243000.t1"; gene_id "Ledus.S1G243000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2581.t1 is derived from g14.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	101842	102540	.	+	.	Ledus.S1G000200
Ledus.S1	AUGUSTUS	transcript	101842	102540	.	+	.	transcript_id "Ledus.S1G000200.t1"; gene_id "Ledus.S1G000200"
Ledus.S1	AUGUSTUS	start_codon	101842	101844	.	+	0	transcript_id "Ledus.S1G000200.t1"; gene_id "Ledus.S1G000200"
Ledus.S1	AUGUSTUS	CDS	101842	102540	1	+	0	transcript_id "Ledus.S1G000200.t1"; gene_id "Ledus.S1G000200"
Ledus.S1	AUGUSTUS	exon	101842	102540	.	+	.	transcript_id "Ledus.S1G000200.t1"; gene_id "Ledus.S1G000200"
Ledus.S1	AUGUSTUS	stop_codon	102541	102543	.	+	0	transcript_id "Ledus.S1G000200.t1"; gene_id "Ledus.S1G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1871.t1 is derived from g8734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13063730	13065834	.	+	.	Ledus.S2G175300
Ledus.S2	AUGUSTUS	transcript	13063730	13065834	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	start_codon	13063730	13063732	.	+	0	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13063730	13063777	0.94	+	0	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13063730	13063777	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13063778	13063908	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13063909	13064075	1	+	0	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13063909	13064075	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13064076	13064175	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13064176	13064580	0.63	+	1	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13064176	13064580	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13064581	13064657	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13064658	13065057	1	+	1	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13064658	13065057	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13065058	13065160	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13065161	13065266	0.99	+	0	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13065161	13065266	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13065267	13065366	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13065367	13065458	0.73	+	2	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13065367	13065458	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13065459	13065573	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13065574	13065642	0.73	+	0	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13065574	13065642	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13065643	13065735	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13065736	13065834	0.47	+	0	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13065736	13065834	.	+	.	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	stop_codon	13065835	13065837	.	+	0	transcript_id "Ledus.S2G175300.t1"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	transcript	13063730	13065834	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	start_codon	13063730	13063732	.	+	0	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13063730	13063777	0.91	+	0	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13063730	13063777	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13063778	13063908	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13063909	13064075	1	+	0	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13063909	13064075	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13064076	13064175	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13064176	13064571	0.67	+	1	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13064176	13064571	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13064572	13064657	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13064658	13065057	1	+	1	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13064658	13065057	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13065058	13065160	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13065161	13065266	1	+	0	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13065161	13065266	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13065267	13065366	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13065367	13065458	0.67	+	2	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13065367	13065458	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13065459	13065573	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13065574	13065642	0.67	+	0	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13065574	13065642	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	intron	13065643	13065735	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	CDS	13065736	13065834	0.56	+	0	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	exon	13065736	13065834	.	+	.	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
Ledus.S2	AUGUSTUS	stop_codon	13065835	13065837	.	+	0	transcript_id "Ledus.S2G175300.t2"; gene_id "Ledus.S2G175300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6746.t1 is derived from g4189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33716323	33721166	.	+	.	Ledus.S1G416700
Ledus.S1	AUGUSTUS	transcript	33716323	33721166	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	start_codon	33716323	33716325	.	+	0	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33716323	33716464	0.8	+	0	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33716323	33716464	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33716465	33716570	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33716571	33717093	1	+	2	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33716571	33717093	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33717094	33717233	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33717234	33717745	0.95	+	1	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33717234	33717745	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33717746	33717869	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33717870	33718008	1	+	2	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33717870	33718008	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33718009	33718168	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33718169	33718246	1	+	1	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33718169	33718246	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33718247	33718388	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33718389	33718460	1	+	1	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33718389	33718460	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33718461	33718630	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33718631	33718708	1	+	1	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33718631	33718708	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33718709	33718808	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33718809	33718877	1	+	1	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33718809	33718877	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33718878	33719040	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33719041	33719375	1	+	1	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33719041	33719375	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33719376	33719495	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33719496	33719540	1	+	2	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33719496	33719540	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33719541	33719648	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33719649	33719836	0.99	+	2	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33719649	33719836	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33719837	33719934	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33719935	33720061	1	+	0	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33719935	33720061	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33720062	33720184	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33720185	33720250	1	+	2	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33720185	33720250	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33720251	33720456	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33720457	33720652	1	+	2	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33720457	33720652	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33720653	33720757	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33720758	33720893	1	+	1	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33720758	33720893	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	intron	33720894	33720980	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	CDS	33720981	33721166	0.98	+	0	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	exon	33720981	33721166	.	+	.	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
Ledus.S1	AUGUSTUS	stop_codon	33721167	33721169	.	+	0	transcript_id "Ledus.S1G416700.t1"; gene_id "Ledus.S1G416700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7298.t1 is derived from g11969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	863291	865642	.	+	.	Ledus.S5G007600
Ledus.S5	AUGUSTUS	transcript	863291	865642	.	+	.	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	start_codon	863291	863293	.	+	0	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	CDS	863291	863395	0.66	+	0	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	exon	863291	863395	.	+	.	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	intron	863396	863512	.	+	.	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	CDS	863513	863607	0.99	+	0	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	exon	863513	863607	.	+	.	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	intron	863608	863882	.	+	.	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	CDS	863883	864795	0.79	+	1	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	exon	863883	864795	.	+	.	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	intron	864796	865099	.	+	.	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	CDS	865100	865642	0.96	+	0	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	exon	865100	865642	.	+	.	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	stop_codon	865643	865645	.	+	0	transcript_id "Ledus.S5G007600.t1"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	transcript	863291	865642	.	+	.	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	start_codon	863291	863293	.	+	0	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	CDS	863291	863409	0.63	+	0	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	exon	863291	863409	.	+	.	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	intron	863410	863512	.	+	.	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	CDS	863513	863607	0.95	+	1	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	exon	863513	863607	.	+	.	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	intron	863608	863764	.	+	.	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	CDS	863765	863782	0.88	+	2	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	exon	863765	863782	.	+	.	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	intron	863783	863908	.	+	.	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	CDS	863909	864795	0.71	+	2	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	exon	863909	864795	.	+	.	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	intron	864796	865099	.	+	.	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	CDS	865100	865642	0.96	+	0	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	exon	865100	865642	.	+	.	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
Ledus.S5	AUGUSTUS	stop_codon	865643	865645	.	+	0	transcript_id "Ledus.S5G007600.t2"; gene_id "Ledus.S5G007600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1915.t1 is derived from g8778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13382601	13384364	.	+	.	Ledus.S2G179700
Ledus.S2	AUGUSTUS	transcript	13382601	13384364	.	+	.	transcript_id "Ledus.S2G179700.t1"; gene_id "Ledus.S2G179700"
Ledus.S2	AUGUSTUS	start_codon	13382601	13382603	.	+	0	transcript_id "Ledus.S2G179700.t1"; gene_id "Ledus.S2G179700"
Ledus.S2	AUGUSTUS	CDS	13382601	13382647	0.72	+	0	transcript_id "Ledus.S2G179700.t1"; gene_id "Ledus.S2G179700"
Ledus.S2	AUGUSTUS	exon	13382601	13382647	.	+	.	transcript_id "Ledus.S2G179700.t1"; gene_id "Ledus.S2G179700"
Ledus.S2	AUGUSTUS	intron	13382648	13382737	.	+	.	transcript_id "Ledus.S2G179700.t1"; gene_id "Ledus.S2G179700"
Ledus.S2	AUGUSTUS	CDS	13382738	13384364	1	+	1	transcript_id "Ledus.S2G179700.t1"; gene_id "Ledus.S2G179700"
Ledus.S2	AUGUSTUS	exon	13382738	13384364	.	+	.	transcript_id "Ledus.S2G179700.t1"; gene_id "Ledus.S2G179700"
Ledus.S2	AUGUSTUS	stop_codon	13384365	13384367	.	+	0	transcript_id "Ledus.S2G179700.t1"; gene_id "Ledus.S2G179700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4415.t1 is derived from g1851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16968425	16970353	.	+	.	Ledus.S1G183600
Ledus.S1	AUGUSTUS	transcript	16968425	16970353	.	+	.	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	start_codon	16968425	16968427	.	+	0	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	CDS	16968425	16968716	0.97	+	0	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	exon	16968425	16968716	.	+	.	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	intron	16968717	16968788	.	+	.	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	CDS	16968789	16969021	1	+	2	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	exon	16968789	16969021	.	+	.	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	intron	16969022	16969101	.	+	.	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	CDS	16969102	16969376	1	+	0	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	exon	16969102	16969376	.	+	.	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	intron	16969377	16969462	.	+	.	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	CDS	16969463	16969841	1	+	1	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	exon	16969463	16969841	.	+	.	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	intron	16969842	16969936	.	+	.	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	CDS	16969937	16970353	0.94	+	0	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	exon	16969937	16970353	.	+	.	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
Ledus.S1	AUGUSTUS	stop_codon	16970354	16970356	.	+	0	transcript_id "Ledus.S1G183600.t1"; gene_id "Ledus.S1G183600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1519.t1 is derived from g8380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10738443	10738673	.	+	.	Ledus.S2G140100
Ledus.S2	AUGUSTUS	transcript	10738443	10738673	.	+	.	transcript_id "Ledus.S2G140100.t1"; gene_id "Ledus.S2G140100"
Ledus.S2	AUGUSTUS	start_codon	10738443	10738445	.	+	0	transcript_id "Ledus.S2G140100.t1"; gene_id "Ledus.S2G140100"
Ledus.S2	AUGUSTUS	CDS	10738443	10738673	0.99	+	0	transcript_id "Ledus.S2G140100.t1"; gene_id "Ledus.S2G140100"
Ledus.S2	AUGUSTUS	exon	10738443	10738673	.	+	.	transcript_id "Ledus.S2G140100.t1"; gene_id "Ledus.S2G140100"
Ledus.S2	AUGUSTUS	stop_codon	10738674	10738676	.	+	0	transcript_id "Ledus.S2G140100.t1"; gene_id "Ledus.S2G140100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4927.t1 is derived from g2365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20670038	20672111	.	-	.	Ledus.S1G234800
Ledus.S1	AUGUSTUS	transcript	20670038	20672111	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	stop_codon	20670035	20670037	.	-	0	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	CDS	20670038	20670150	1	-	2	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	exon	20670038	20670150	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	intron	20670151	20670238	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	CDS	20670239	20670293	1	-	0	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	exon	20670239	20670293	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	intron	20670294	20670422	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	CDS	20670423	20670450	0.96	-	1	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	exon	20670423	20670450	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	intron	20670451	20670565	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	CDS	20670566	20670636	1	-	0	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	exon	20670566	20670636	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	intron	20670637	20670750	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	CDS	20670751	20670848	0.95	-	2	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	exon	20670751	20670848	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	intron	20670849	20670968	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	CDS	20670969	20671086	0.98	-	0	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	exon	20670969	20671086	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	intron	20671087	20671188	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	CDS	20671189	20671249	1	-	1	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	exon	20671189	20671249	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	intron	20671250	20671347	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	CDS	20671348	20671412	1	-	0	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	exon	20671348	20671412	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	intron	20671413	20671495	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	CDS	20671496	20671531	1	-	0	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	exon	20671496	20671531	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	intron	20671532	20671659	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	CDS	20671660	20671719	1	-	0	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	exon	20671660	20671719	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	intron	20671720	20671826	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	CDS	20671827	20672111	0.58	-	0	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	exon	20671827	20672111	.	-	.	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
Ledus.S1	AUGUSTUS	start_codon	20672109	20672111	.	-	0	transcript_id "Ledus.S1G234800.t1"; gene_id "Ledus.S1G234800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12563.t1 is derived from g6185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12885282	12885957	.	-	.	Ledus.S4G171900
Ledus.S4	AUGUSTUS	transcript	12885282	12885957	.	-	.	transcript_id "Ledus.S4G171900.t1"; gene_id "Ledus.S4G171900"
Ledus.S4	AUGUSTUS	stop_codon	12885279	12885281	.	-	0	transcript_id "Ledus.S4G171900.t1"; gene_id "Ledus.S4G171900"
Ledus.S4	AUGUSTUS	CDS	12885282	12885356	0.99	-	0	transcript_id "Ledus.S4G171900.t1"; gene_id "Ledus.S4G171900"
Ledus.S4	AUGUSTUS	exon	12885282	12885356	.	-	.	transcript_id "Ledus.S4G171900.t1"; gene_id "Ledus.S4G171900"
Ledus.S4	AUGUSTUS	intron	12885357	12885513	.	-	.	transcript_id "Ledus.S4G171900.t1"; gene_id "Ledus.S4G171900"
Ledus.S4	AUGUSTUS	CDS	12885514	12885957	0.66	-	0	transcript_id "Ledus.S4G171900.t1"; gene_id "Ledus.S4G171900"
Ledus.S4	AUGUSTUS	exon	12885514	12885957	.	-	.	transcript_id "Ledus.S4G171900.t1"; gene_id "Ledus.S4G171900"
Ledus.S4	AUGUSTUS	start_codon	12885955	12885957	.	-	0	transcript_id "Ledus.S4G171900.t1"; gene_id "Ledus.S4G171900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9723.t1 is derived from g10753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9419306	9421141	.	-	.	Ledus.S3G120000
Ledus.S3	AUGUSTUS	transcript	9419306	9421141	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	stop_codon	9419303	9419305	.	-	0	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	CDS	9419306	9419398	0.96	-	0	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	exon	9419306	9419398	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	intron	9419399	9419524	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	CDS	9419525	9419590	1	-	0	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	exon	9419525	9419590	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	intron	9419591	9419720	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	CDS	9419721	9419785	1	-	2	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	exon	9419721	9419785	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	intron	9419786	9419933	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	CDS	9419934	9419997	1	-	0	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	exon	9419934	9419997	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	intron	9419998	9420109	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	CDS	9420110	9420219	1	-	2	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	exon	9420110	9420219	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	intron	9420220	9420302	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	CDS	9420303	9420390	1	-	0	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	exon	9420303	9420390	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	intron	9420391	9420633	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	CDS	9420634	9420718	0.58	-	1	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	exon	9420634	9420718	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	intron	9420719	9420908	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	CDS	9420909	9421141	0.1	-	0	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	exon	9420909	9421141	.	-	.	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
Ledus.S3	AUGUSTUS	start_codon	9421139	9421141	.	-	0	transcript_id "Ledus.S3G120000.t1"; gene_id "Ledus.S3G120000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2565.t1 is derived from g9428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19001599	19007677	.	+	.	Ledus.S2G244700
Ledus.S2	AUGUSTUS	transcript	19001599	19007677	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	start_codon	19001599	19001601	.	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19001599	19001706	0.7	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19001599	19001706	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19001707	19001816	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19001817	19001978	0.85	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19001817	19001978	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19001979	19002098	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19002099	19002186	1	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19002099	19002186	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19002187	19002286	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19002287	19002502	1	+	2	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19002287	19002502	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19002503	19002632	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19002633	19002800	1	+	2	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19002633	19002800	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19002801	19003071	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19003072	19003268	1	+	2	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19003072	19003268	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19003269	19003364	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19003365	19003448	1	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19003365	19003448	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19003449	19003562	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19003563	19003682	0.91	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19003563	19003682	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19003683	19003788	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19003789	19003975	0.99	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19003789	19003975	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19003976	19004748	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19004749	19004909	1	+	2	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19004749	19004909	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19004910	19005007	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19005008	19005079	1	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19005008	19005079	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19005080	19005181	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19005182	19005258	1	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19005182	19005258	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19005259	19005408	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19005409	19005603	1	+	1	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19005409	19005603	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19005604	19005751	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19005752	19005824	1	+	1	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19005752	19005824	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19005825	19005915	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19005916	19006002	1	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19005916	19006002	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19006003	19006162	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19006163	19006300	1	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19006163	19006300	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19006301	19006392	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19006393	19006595	1	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19006393	19006595	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19006596	19006879	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19006880	19006956	0.54	+	1	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19006880	19006956	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19006957	19007089	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19007090	19007131	0.54	+	2	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19007090	19007131	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19007132	19007418	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19007419	19007435	0.65	+	2	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19007419	19007435	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	intron	19007436	19007587	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	CDS	19007588	19007677	0.65	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	exon	19007588	19007677	.	+	.	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
Ledus.S2	AUGUSTUS	stop_codon	19007678	19007680	.	+	0	transcript_id "Ledus.S2G244700.t1"; gene_id "Ledus.S2G244700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3768.t1 is derived from g1204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11808925	11809362	.	+	.	Ledus.S1G118900
Ledus.S1	AUGUSTUS	transcript	11808925	11809362	.	+	.	transcript_id "Ledus.S1G118900.t1"; gene_id "Ledus.S1G118900"
Ledus.S1	AUGUSTUS	start_codon	11808925	11808927	.	+	0	transcript_id "Ledus.S1G118900.t1"; gene_id "Ledus.S1G118900"
Ledus.S1	AUGUSTUS	CDS	11808925	11809362	0.75	+	0	transcript_id "Ledus.S1G118900.t1"; gene_id "Ledus.S1G118900"
Ledus.S1	AUGUSTUS	exon	11808925	11809362	.	+	.	transcript_id "Ledus.S1G118900.t1"; gene_id "Ledus.S1G118900"
Ledus.S1	AUGUSTUS	stop_codon	11809363	11809365	.	+	0	transcript_id "Ledus.S1G118900.t1"; gene_id "Ledus.S1G118900"
# This transcript jg11078.t2 is derived from g4696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11079.t1 is derived from g4697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1629182	1632820	.	+	.	Ledus.S4G023500
Ledus.S4	AUGUSTUS	transcript	1629182	1632820	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	start_codon	1629182	1629184	.	+	0	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1629182	1629190	0.74	+	0	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1629182	1629190	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1629191	1629358	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1629359	1629407	0.36	+	0	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1629359	1629407	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1629408	1629456	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1629457	1629498	0.67	+	2	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1629457	1629498	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1629499	1629591	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1629592	1629692	0.68	+	2	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1629592	1629692	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1629693	1629886	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1629887	1630027	0.73	+	0	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1629887	1630027	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1630028	1630124	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1630125	1630191	1	+	0	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1630125	1630191	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1630192	1630585	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1630586	1630743	1	+	2	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1630586	1630743	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1630744	1630858	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1630859	1630960	0.88	+	0	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1630859	1630960	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1630961	1631095	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1631096	1631215	1	+	0	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1631096	1631215	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1631216	1631312	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1631313	1631447	0.68	+	0	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1631313	1631447	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1631448	1631516	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1631517	1631574	0.82	+	0	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1631517	1631574	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1631575	1631811	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1631812	1632053	0.99	+	2	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1631812	1632053	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1632054	1632321	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1632322	1632372	0.99	+	0	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1632322	1632372	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	intron	1632373	1632757	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	CDS	1632758	1632820	0.99	+	0	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	exon	1632758	1632820	.	+	.	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
Ledus.S4	AUGUSTUS	stop_codon	1632821	1632823	.	+	0	transcript_id "Ledus.S4G023500.t1"; gene_id "Ledus.S4G023500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10127.t1 is derived from g11157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12955368	12956038	.	+	.	Ledus.S3G160400
Ledus.S3	AUGUSTUS	transcript	12955368	12956038	.	+	.	transcript_id "Ledus.S3G160400.t1"; gene_id "Ledus.S3G160400"
Ledus.S3	AUGUSTUS	start_codon	12955368	12955370	.	+	0	transcript_id "Ledus.S3G160400.t1"; gene_id "Ledus.S3G160400"
Ledus.S3	AUGUSTUS	CDS	12955368	12955953	0.92	+	0	transcript_id "Ledus.S3G160400.t1"; gene_id "Ledus.S3G160400"
Ledus.S3	AUGUSTUS	exon	12955368	12955953	.	+	.	transcript_id "Ledus.S3G160400.t1"; gene_id "Ledus.S3G160400"
Ledus.S3	AUGUSTUS	intron	12955954	12956030	.	+	.	transcript_id "Ledus.S3G160400.t1"; gene_id "Ledus.S3G160400"
Ledus.S3	AUGUSTUS	CDS	12956031	12956038	0.93	+	2	transcript_id "Ledus.S3G160400.t1"; gene_id "Ledus.S3G160400"
Ledus.S3	AUGUSTUS	exon	12956031	12956038	.	+	.	transcript_id "Ledus.S3G160400.t1"; gene_id "Ledus.S3G160400"
Ledus.S3	AUGUSTUS	stop_codon	12956039	12956041	.	+	0	transcript_id "Ledus.S3G160400.t1"; gene_id "Ledus.S3G160400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6672.t1 is derived from g4115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33060088	33061662	.	-	.	Ledus.S1G409300
Ledus.S1	AUGUSTUS	transcript	33060088	33061662	.	-	.	transcript_id "Ledus.S1G409300.t1"; gene_id "Ledus.S1G409300"
Ledus.S1	AUGUSTUS	stop_codon	33060085	33060087	.	-	0	transcript_id "Ledus.S1G409300.t1"; gene_id "Ledus.S1G409300"
Ledus.S1	AUGUSTUS	CDS	33060088	33061662	0.98	-	0	transcript_id "Ledus.S1G409300.t1"; gene_id "Ledus.S1G409300"
Ledus.S1	AUGUSTUS	exon	33060088	33061662	.	-	.	transcript_id "Ledus.S1G409300.t1"; gene_id "Ledus.S1G409300"
Ledus.S1	AUGUSTUS	start_codon	33061660	33061662	.	-	0	transcript_id "Ledus.S1G409300.t1"; gene_id "Ledus.S1G409300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2181.t1 is derived from g9044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15787063	15789387	.	+	.	Ledus.S2G206300
Ledus.S2	AUGUSTUS	transcript	15787063	15789387	.	+	.	transcript_id "Ledus.S2G206300.t1"; gene_id "Ledus.S2G206300"
Ledus.S2	AUGUSTUS	start_codon	15787063	15787065	.	+	0	transcript_id "Ledus.S2G206300.t1"; gene_id "Ledus.S2G206300"
Ledus.S2	AUGUSTUS	CDS	15787063	15789387	0.44	+	0	transcript_id "Ledus.S2G206300.t1"; gene_id "Ledus.S2G206300"
Ledus.S2	AUGUSTUS	exon	15787063	15789387	.	+	.	transcript_id "Ledus.S2G206300.t1"; gene_id "Ledus.S2G206300"
Ledus.S2	AUGUSTUS	stop_codon	15789388	15789390	.	+	0	transcript_id "Ledus.S2G206300.t1"; gene_id "Ledus.S2G206300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7589.t1 is derived from g12260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4247282	4248868	.	-	.	Ledus.S5G036700
Ledus.S5	AUGUSTUS	transcript	4247282	4248868	.	-	.	transcript_id "Ledus.S5G036700.t1"; gene_id "Ledus.S5G036700"
Ledus.S5	AUGUSTUS	stop_codon	4247279	4247281	.	-	0	transcript_id "Ledus.S5G036700.t1"; gene_id "Ledus.S5G036700"
Ledus.S5	AUGUSTUS	CDS	4247282	4248868	1	-	0	transcript_id "Ledus.S5G036700.t1"; gene_id "Ledus.S5G036700"
Ledus.S5	AUGUSTUS	exon	4247282	4248868	.	-	.	transcript_id "Ledus.S5G036700.t1"; gene_id "Ledus.S5G036700"
Ledus.S5	AUGUSTUS	start_codon	4248866	4248868	.	-	0	transcript_id "Ledus.S5G036700.t1"; gene_id "Ledus.S5G036700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1592.t1 is derived from g8453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11171837	11176596	.	+	.	Ledus.S2G147400
Ledus.S2	AUGUSTUS	transcript	11171837	11176596	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	start_codon	11171837	11171839	.	+	0	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11171837	11172083	0.56	+	0	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11171837	11172083	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11172084	11172163	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11172164	11172201	1	+	2	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11172164	11172201	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11172202	11172295	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11172296	11172335	0.86	+	0	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11172296	11172335	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11172336	11172452	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11172453	11172720	0.77	+	2	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11172453	11172720	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11172721	11172869	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11172870	11173085	1	+	1	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11172870	11173085	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11173086	11173183	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11173184	11173335	1	+	1	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11173184	11173335	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11173336	11173421	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11173422	11173701	0.95	+	2	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11173422	11173701	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11173702	11173804	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11173805	11174022	1	+	1	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11173805	11174022	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11174023	11174165	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11174166	11174264	1	+	2	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11174166	11174264	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11174265	11174405	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11174406	11174944	0.99	+	2	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11174406	11174944	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11174945	11175090	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11175091	11175367	0.99	+	0	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11175091	11175367	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11175368	11175533	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11175534	11176074	0.63	+	2	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11175534	11176074	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11176075	11176180	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11176181	11176379	0.98	+	1	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11176181	11176379	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11176380	11176458	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11176459	11176596	0.94	+	0	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11176459	11176596	.	+	.	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	stop_codon	11176597	11176599	.	+	0	transcript_id "Ledus.S2G147400.t1"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	transcript	11171837	11176596	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	start_codon	11171837	11171839	.	+	0	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11171837	11172083	0.49	+	0	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11171837	11172083	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11172084	11172163	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11172164	11172201	1	+	2	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11172164	11172201	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11172202	11172295	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11172296	11172335	0.91	+	0	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11172296	11172335	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11172336	11172452	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11172453	11172720	0.74	+	2	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11172453	11172720	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11172721	11172896	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11172897	11173085	1	+	1	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11172897	11173085	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11173086	11173183	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11173184	11173335	1	+	1	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11173184	11173335	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11173336	11173421	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11173422	11173701	0.96	+	2	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11173422	11173701	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11173702	11173804	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11173805	11174022	1	+	1	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11173805	11174022	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11174023	11174165	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11174166	11174264	1	+	2	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11174166	11174264	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11174265	11174405	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11174406	11174944	1	+	2	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11174406	11174944	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11174945	11175090	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11175091	11175367	1	+	0	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11175091	11175367	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11175368	11175533	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11175534	11176074	0.52	+	2	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11175534	11176074	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11176075	11176180	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11176181	11176379	0.99	+	1	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11176181	11176379	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	intron	11176380	11176458	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	CDS	11176459	11176596	0.97	+	0	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	exon	11176459	11176596	.	+	.	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
Ledus.S2	AUGUSTUS	stop_codon	11176597	11176599	.	+	0	transcript_id "Ledus.S2G147400.t2"; gene_id "Ledus.S2G147400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3975.t1 is derived from g1411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13831722	13832092	.	+	.	Ledus.S1G139600
Ledus.S1	AUGUSTUS	transcript	13831722	13832092	.	+	.	transcript_id "Ledus.S1G139600.t1"; gene_id "Ledus.S1G139600"
Ledus.S1	AUGUSTUS	start_codon	13831722	13831724	.	+	0	transcript_id "Ledus.S1G139600.t1"; gene_id "Ledus.S1G139600"
Ledus.S1	AUGUSTUS	CDS	13831722	13831970	0.64	+	0	transcript_id "Ledus.S1G139600.t1"; gene_id "Ledus.S1G139600"
Ledus.S1	AUGUSTUS	exon	13831722	13831970	.	+	.	transcript_id "Ledus.S1G139600.t1"; gene_id "Ledus.S1G139600"
Ledus.S1	AUGUSTUS	intron	13831971	13832065	.	+	.	transcript_id "Ledus.S1G139600.t1"; gene_id "Ledus.S1G139600"
Ledus.S1	AUGUSTUS	CDS	13832066	13832092	0.64	+	0	transcript_id "Ledus.S1G139600.t1"; gene_id "Ledus.S1G139600"
Ledus.S1	AUGUSTUS	exon	13832066	13832092	.	+	.	transcript_id "Ledus.S1G139600.t1"; gene_id "Ledus.S1G139600"
Ledus.S1	AUGUSTUS	stop_codon	13832093	13832095	.	+	0	transcript_id "Ledus.S1G139600.t1"; gene_id "Ledus.S1G139600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10472.t1 is derived from g11502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15474826	15478382	.	+	.	Ledus.S3G194900
Ledus.S3	AUGUSTUS	transcript	15474826	15478382	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	start_codon	15474826	15474828	.	+	0	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	CDS	15474826	15474887	0.19	+	0	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	exon	15474826	15474887	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	intron	15474888	15475037	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	CDS	15475038	15475224	0.43	+	1	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	exon	15475038	15475224	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	intron	15475225	15475302	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	CDS	15475303	15475578	0.95	+	0	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	exon	15475303	15475578	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	intron	15475579	15475677	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	CDS	15475678	15477193	0.98	+	0	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	exon	15475678	15477193	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	intron	15477194	15477357	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	CDS	15477358	15477626	0.83	+	2	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	exon	15477358	15477626	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	intron	15477627	15477746	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	CDS	15477747	15477820	0.98	+	0	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	exon	15477747	15477820	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	intron	15477821	15477917	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	CDS	15477918	15478050	0.99	+	1	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	exon	15477918	15478050	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	intron	15478051	15478154	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	CDS	15478155	15478382	0.99	+	0	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	exon	15478155	15478382	.	+	.	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
Ledus.S3	AUGUSTUS	stop_codon	15478383	15478385	.	+	0	transcript_id "Ledus.S3G194900.t1"; gene_id "Ledus.S3G194900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7350.t1 is derived from g12021.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1379976	1385614	.	+	.	Ledus.S5G012800
Ledus.S5	AUGUSTUS	transcript	1379976	1385614	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	start_codon	1379976	1379978	.	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1379976	1380076	0.53	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1379976	1380076	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1380077	1380214	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1380215	1380281	0.59	+	1	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1380215	1380281	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1380282	1380408	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1380409	1380483	1	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1380409	1380483	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1380484	1380570	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1380571	1380686	1	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1380571	1380686	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1380687	1380840	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1380841	1380955	1	+	1	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1380841	1380955	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1380956	1381101	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1381102	1381230	1	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1381102	1381230	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1381231	1381647	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1381648	1381695	1	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1381648	1381695	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1381696	1381824	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1381825	1382027	1	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1381825	1382027	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1382028	1382105	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1382106	1382302	1	+	1	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1382106	1382302	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1382303	1382390	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1382391	1382683	1	+	2	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1382391	1382683	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1382684	1382815	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1382816	1382965	1	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1382816	1382965	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1382966	1383098	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1383099	1383563	0.95	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1383099	1383563	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1383564	1383655	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1383656	1383805	1	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1383656	1383805	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1383806	1383895	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1383896	1383971	0.99	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1383896	1383971	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1383972	1384086	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1384087	1384214	0.95	+	2	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1384087	1384214	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1384215	1384330	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1384331	1384522	1	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1384331	1384522	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1384523	1384645	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1384646	1384783	0.93	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1384646	1384783	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1384784	1384879	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1384880	1385017	1	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1384880	1385017	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1385018	1385170	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1385171	1385380	1	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1385171	1385380	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	intron	1385381	1385479	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	CDS	1385480	1385614	1	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	exon	1385480	1385614	.	+	.	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
Ledus.S5	AUGUSTUS	stop_codon	1385615	1385617	.	+	0	transcript_id "Ledus.S5G012800.t1"; gene_id "Ledus.S5G012800"
# This transcript jg5637.t2 is derived from g3076.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5638.t1 is derived from g3077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25531400	25531702	.	+	.	Ledus.S1G305900
Ledus.S1	AUGUSTUS	transcript	25531400	25531702	.	+	.	transcript_id "Ledus.S1G305900.t1"; gene_id "Ledus.S1G305900"
Ledus.S1	AUGUSTUS	start_codon	25531400	25531402	.	+	0	transcript_id "Ledus.S1G305900.t1"; gene_id "Ledus.S1G305900"
Ledus.S1	AUGUSTUS	CDS	25531400	25531702	0.67	+	0	transcript_id "Ledus.S1G305900.t1"; gene_id "Ledus.S1G305900"
Ledus.S1	AUGUSTUS	exon	25531400	25531702	.	+	.	transcript_id "Ledus.S1G305900.t1"; gene_id "Ledus.S1G305900"
Ledus.S1	AUGUSTUS	stop_codon	25531703	25531705	.	+	0	transcript_id "Ledus.S1G305900.t1"; gene_id "Ledus.S1G305900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8871.t1 is derived from g9901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2613588	2613896	.	-	.	Ledus.S3G034800
Ledus.S3	AUGUSTUS	transcript	2613588	2613896	.	-	.	transcript_id "Ledus.S3G034800.t1"; gene_id "Ledus.S3G034800"
Ledus.S3	AUGUSTUS	stop_codon	2613585	2613587	.	-	0	transcript_id "Ledus.S3G034800.t1"; gene_id "Ledus.S3G034800"
Ledus.S3	AUGUSTUS	CDS	2613588	2613896	0.34	-	0	transcript_id "Ledus.S3G034800.t1"; gene_id "Ledus.S3G034800"
Ledus.S3	AUGUSTUS	exon	2613588	2613896	.	-	.	transcript_id "Ledus.S3G034800.t1"; gene_id "Ledus.S3G034800"
Ledus.S3	AUGUSTUS	start_codon	2613894	2613896	.	-	0	transcript_id "Ledus.S3G034800.t1"; gene_id "Ledus.S3G034800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2160.t1 is derived from g9023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15412767	15413886	.	+	.	Ledus.S2G204200
Ledus.S2	AUGUSTUS	transcript	15412767	15413886	.	+	.	transcript_id "Ledus.S2G204200.t1"; gene_id "Ledus.S2G204200"
Ledus.S2	AUGUSTUS	start_codon	15412767	15412769	.	+	0	transcript_id "Ledus.S2G204200.t1"; gene_id "Ledus.S2G204200"
Ledus.S2	AUGUSTUS	CDS	15412767	15412900	0.01	+	0	transcript_id "Ledus.S2G204200.t1"; gene_id "Ledus.S2G204200"
Ledus.S2	AUGUSTUS	exon	15412767	15412900	.	+	.	transcript_id "Ledus.S2G204200.t1"; gene_id "Ledus.S2G204200"
Ledus.S2	AUGUSTUS	intron	15412901	15413792	.	+	.	transcript_id "Ledus.S2G204200.t1"; gene_id "Ledus.S2G204200"
Ledus.S2	AUGUSTUS	CDS	15413793	15413886	0.02	+	1	transcript_id "Ledus.S2G204200.t1"; gene_id "Ledus.S2G204200"
Ledus.S2	AUGUSTUS	exon	15413793	15413886	.	+	.	transcript_id "Ledus.S2G204200.t1"; gene_id "Ledus.S2G204200"
Ledus.S2	AUGUSTUS	stop_codon	15413887	15413889	.	+	0	transcript_id "Ledus.S2G204200.t1"; gene_id "Ledus.S2G204200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12974.t1 is derived from g6784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1506215	1507415	.	+	.	Ledus.S6G003600
Ledus.S6	AUGUSTUS	transcript	1506215	1507415	.	+	.	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	start_codon	1506215	1506217	.	+	0	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	CDS	1506215	1506305	0.75	+	0	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	exon	1506215	1506305	.	+	.	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	intron	1506306	1506482	.	+	.	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	CDS	1506483	1506556	0.99	+	2	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	exon	1506483	1506556	.	+	.	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	intron	1506557	1506643	.	+	.	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	CDS	1506644	1506742	0.99	+	0	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	exon	1506644	1506742	.	+	.	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	intron	1506743	1506872	.	+	.	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	CDS	1506873	1506986	0.92	+	0	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	exon	1506873	1506986	.	+	.	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	intron	1506987	1507079	.	+	.	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	CDS	1507080	1507151	0.97	+	0	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	exon	1507080	1507151	.	+	.	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	intron	1507152	1507253	.	+	.	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	CDS	1507254	1507415	0.97	+	0	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	exon	1507254	1507415	.	+	.	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
Ledus.S6	AUGUSTUS	stop_codon	1507416	1507418	.	+	0	transcript_id "Ledus.S6G003600.t1"; gene_id "Ledus.S6G003600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg512.t1 is derived from g7373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3002833	3003558	.	+	.	Ledus.S2G039400
Ledus.S2	AUGUSTUS	transcript	3002833	3003558	.	+	.	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	start_codon	3002833	3002835	.	+	0	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	CDS	3002833	3002853	0.91	+	0	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	exon	3002833	3002853	.	+	.	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	intron	3002854	3002925	.	+	.	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	CDS	3002926	3003099	1	+	0	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	exon	3002926	3003099	.	+	.	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	intron	3003100	3003187	.	+	.	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	CDS	3003188	3003376	1	+	0	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	exon	3003188	3003376	.	+	.	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	intron	3003377	3003459	.	+	.	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	CDS	3003460	3003558	1	+	0	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	exon	3003460	3003558	.	+	.	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
Ledus.S2	AUGUSTUS	stop_codon	3003559	3003561	.	+	0	transcript_id "Ledus.S2G039400.t1"; gene_id "Ledus.S2G039400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12033.t1 is derived from g5652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9015417	9016457	.	-	.	Ledus.S4G118900
Ledus.S4	AUGUSTUS	transcript	9015417	9016457	.	-	.	transcript_id "Ledus.S4G118900.t1"; gene_id "Ledus.S4G118900"
Ledus.S4	AUGUSTUS	stop_codon	9015414	9015416	.	-	0	transcript_id "Ledus.S4G118900.t1"; gene_id "Ledus.S4G118900"
Ledus.S4	AUGUSTUS	CDS	9015417	9015500	0.92	-	0	transcript_id "Ledus.S4G118900.t1"; gene_id "Ledus.S4G118900"
Ledus.S4	AUGUSTUS	exon	9015417	9015500	.	-	.	transcript_id "Ledus.S4G118900.t1"; gene_id "Ledus.S4G118900"
Ledus.S4	AUGUSTUS	intron	9015501	9015602	.	-	.	transcript_id "Ledus.S4G118900.t1"; gene_id "Ledus.S4G118900"
Ledus.S4	AUGUSTUS	CDS	9015603	9015854	0.99	-	0	transcript_id "Ledus.S4G118900.t1"; gene_id "Ledus.S4G118900"
Ledus.S4	AUGUSTUS	exon	9015603	9015854	.	-	.	transcript_id "Ledus.S4G118900.t1"; gene_id "Ledus.S4G118900"
Ledus.S4	AUGUSTUS	intron	9015855	9016277	.	-	.	transcript_id "Ledus.S4G118900.t1"; gene_id "Ledus.S4G118900"
Ledus.S4	AUGUSTUS	CDS	9016278	9016457	0.91	-	0	transcript_id "Ledus.S4G118900.t1"; gene_id "Ledus.S4G118900"
Ledus.S4	AUGUSTUS	exon	9016278	9016457	.	-	.	transcript_id "Ledus.S4G118900.t1"; gene_id "Ledus.S4G118900"
Ledus.S4	AUGUSTUS	start_codon	9016455	9016457	.	-	0	transcript_id "Ledus.S4G118900.t1"; gene_id "Ledus.S4G118900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg932.t1 is derived from g7793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6218820	6219020	.	-	.	Ledus.S2G081400
Ledus.S2	AUGUSTUS	transcript	6218820	6219020	.	-	.	transcript_id "Ledus.S2G081400.t1"; gene_id "Ledus.S2G081400"
Ledus.S2	AUGUSTUS	stop_codon	6218817	6218819	.	-	0	transcript_id "Ledus.S2G081400.t1"; gene_id "Ledus.S2G081400"
Ledus.S2	AUGUSTUS	CDS	6218820	6219020	0.87	-	0	transcript_id "Ledus.S2G081400.t1"; gene_id "Ledus.S2G081400"
Ledus.S2	AUGUSTUS	exon	6218820	6219020	.	-	.	transcript_id "Ledus.S2G081400.t1"; gene_id "Ledus.S2G081400"
Ledus.S2	AUGUSTUS	start_codon	6219018	6219020	.	-	0	transcript_id "Ledus.S2G081400.t1"; gene_id "Ledus.S2G081400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1837.t1 is derived from g8700.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12900715	12902342	.	+	.	Ledus.S2G171900
Ledus.S2	AUGUSTUS	transcript	12900715	12902342	.	+	.	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	start_codon	12900715	12900717	.	+	0	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	CDS	12900715	12900757	0.98	+	0	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	exon	12900715	12900757	.	+	.	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	intron	12900758	12900878	.	+	.	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	CDS	12900879	12900968	1	+	2	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	exon	12900879	12900968	.	+	.	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	intron	12900969	12901099	.	+	.	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	CDS	12901100	12901361	1	+	2	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	exon	12901100	12901361	.	+	.	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	intron	12901362	12901447	.	+	.	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	CDS	12901448	12902342	0.9	+	1	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	exon	12901448	12902342	.	+	.	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
Ledus.S2	AUGUSTUS	stop_codon	12902343	12902345	.	+	0	transcript_id "Ledus.S2G171900.t1"; gene_id "Ledus.S2G171900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3691.t1 is derived from g1127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10939226	10939721	.	-	.	Ledus.S1G111200
Ledus.S1	AUGUSTUS	transcript	10939226	10939721	.	-	.	transcript_id "Ledus.S1G111200.t1"; gene_id "Ledus.S1G111200"
Ledus.S1	AUGUSTUS	stop_codon	10939223	10939225	.	-	0	transcript_id "Ledus.S1G111200.t1"; gene_id "Ledus.S1G111200"
Ledus.S1	AUGUSTUS	CDS	10939226	10939455	0.66	-	2	transcript_id "Ledus.S1G111200.t1"; gene_id "Ledus.S1G111200"
Ledus.S1	AUGUSTUS	exon	10939226	10939455	.	-	.	transcript_id "Ledus.S1G111200.t1"; gene_id "Ledus.S1G111200"
Ledus.S1	AUGUSTUS	intron	10939456	10939579	.	-	.	transcript_id "Ledus.S1G111200.t1"; gene_id "Ledus.S1G111200"
Ledus.S1	AUGUSTUS	CDS	10939580	10939721	0.58	-	0	transcript_id "Ledus.S1G111200.t1"; gene_id "Ledus.S1G111200"
Ledus.S1	AUGUSTUS	exon	10939580	10939721	.	-	.	transcript_id "Ledus.S1G111200.t1"; gene_id "Ledus.S1G111200"
Ledus.S1	AUGUSTUS	start_codon	10939719	10939721	.	-	0	transcript_id "Ledus.S1G111200.t1"; gene_id "Ledus.S1G111200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg860.t1 is derived from g7721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5716200	5720016	.	-	.	Ledus.S2G074200
Ledus.S2	AUGUSTUS	transcript	5716200	5720016	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	stop_codon	5716197	5716199	.	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5716200	5716325	0.37	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5716200	5716325	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5716326	5716405	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5716406	5716522	1	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5716406	5716522	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5716523	5716599	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5716600	5716741	1	-	1	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5716600	5716741	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5716742	5716819	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5716820	5716929	1	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5716820	5716929	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5716930	5717004	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5717005	5717154	1	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5717005	5717154	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5717155	5717253	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5717254	5717352	1	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5717254	5717352	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5717353	5717430	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5717431	5717499	1	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5717431	5717499	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5717500	5717588	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5717589	5717645	0.94	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5717589	5717645	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5717646	5717932	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5717933	5718022	0.58	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5717933	5718022	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5718023	5718117	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5718118	5718193	1	-	1	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5718118	5718193	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5718194	5718269	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5718270	5718349	1	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5718270	5718349	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5718350	5718463	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5718464	5718515	0.98	-	1	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5718464	5718515	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5718516	5718639	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5718640	5718839	1	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5718640	5718839	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5718840	5718966	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5718967	5719032	1	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5718967	5719032	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5719033	5719119	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5719120	5719198	1	-	1	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5719120	5719198	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5719199	5719280	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5719281	5719436	1	-	1	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5719281	5719436	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5719437	5719504	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5719505	5719675	1	-	1	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5719505	5719675	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	intron	5719676	5719753	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	CDS	5719754	5720016	0.46	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	exon	5719754	5720016	.	-	.	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
Ledus.S2	AUGUSTUS	start_codon	5720014	5720016	.	-	0	transcript_id "Ledus.S2G074200.t1"; gene_id "Ledus.S2G074200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5316.t1 is derived from g2755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23283249	23283797	.	-	.	Ledus.S1G273700
Ledus.S1	AUGUSTUS	transcript	23283249	23283797	.	-	.	transcript_id "Ledus.S1G273700.t1"; gene_id "Ledus.S1G273700"
Ledus.S1	AUGUSTUS	stop_codon	23283246	23283248	.	-	0	transcript_id "Ledus.S1G273700.t1"; gene_id "Ledus.S1G273700"
Ledus.S1	AUGUSTUS	CDS	23283249	23283797	0.99	-	0	transcript_id "Ledus.S1G273700.t1"; gene_id "Ledus.S1G273700"
Ledus.S1	AUGUSTUS	exon	23283249	23283797	.	-	.	transcript_id "Ledus.S1G273700.t1"; gene_id "Ledus.S1G273700"
Ledus.S1	AUGUSTUS	start_codon	23283795	23283797	.	-	0	transcript_id "Ledus.S1G273700.t1"; gene_id "Ledus.S1G273700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9230.t1 is derived from g10260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5517231	5519909	.	+	.	Ledus.S3G070700
Ledus.S3	AUGUSTUS	transcript	5517231	5519909	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	start_codon	5517231	5517233	.	+	0	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5517231	5517413	1	+	0	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5517231	5517413	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	intron	5517414	5517509	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5517510	5517542	1	+	0	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5517510	5517542	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	intron	5517543	5517688	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5517689	5517712	0.74	+	0	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5517689	5517712	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	intron	5517713	5517828	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5517829	5517892	1	+	0	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5517829	5517892	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	intron	5517893	5517997	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5517998	5518086	1	+	2	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5517998	5518086	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	intron	5518087	5518233	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5518234	5518302	1	+	0	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5518234	5518302	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	intron	5518303	5518403	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5518404	5518606	0.86	+	0	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5518404	5518606	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	intron	5518607	5518727	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5518728	5518881	1	+	1	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5518728	5518881	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	intron	5518882	5518964	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5518965	5519078	1	+	0	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5518965	5519078	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	intron	5519079	5519152	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5519153	5519215	1	+	0	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5519153	5519215	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	intron	5519216	5519293	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5519294	5519436	1	+	0	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5519294	5519436	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	intron	5519437	5519528	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5519529	5519667	1	+	1	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5519529	5519667	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	intron	5519668	5519771	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	CDS	5519772	5519909	1	+	0	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	exon	5519772	5519909	.	+	.	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
Ledus.S3	AUGUSTUS	stop_codon	5519910	5519912	.	+	0	transcript_id "Ledus.S3G070700.t1"; gene_id "Ledus.S3G070700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9451.t1 is derived from g10481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7055455	7056696	.	+	.	Ledus.S3G092800
Ledus.S3	AUGUSTUS	transcript	7055455	7056696	.	+	.	transcript_id "Ledus.S3G092800.t1"; gene_id "Ledus.S3G092800"
Ledus.S3	AUGUSTUS	start_codon	7055455	7055457	.	+	0	transcript_id "Ledus.S3G092800.t1"; gene_id "Ledus.S3G092800"
Ledus.S3	AUGUSTUS	CDS	7055455	7056696	0.77	+	0	transcript_id "Ledus.S3G092800.t1"; gene_id "Ledus.S3G092800"
Ledus.S3	AUGUSTUS	exon	7055455	7056696	.	+	.	transcript_id "Ledus.S3G092800.t1"; gene_id "Ledus.S3G092800"
Ledus.S3	AUGUSTUS	stop_codon	7056697	7056699	.	+	0	transcript_id "Ledus.S3G092800.t1"; gene_id "Ledus.S3G092800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8600.t1 is derived from g9630.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	507734	509787	.	-	.	Ledus.S3G007700
Ledus.S3	AUGUSTUS	transcript	507734	509787	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	stop_codon	507731	507733	.	-	0	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	507734	507859	1	-	0	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	507734	507859	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	507860	507982	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	507983	508026	1	-	2	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	507983	508026	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	508027	508117	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	508118	508208	1	-	0	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	508118	508208	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	508209	508281	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	508282	508464	1	-	0	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	508282	508464	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	508465	508542	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	508543	508586	1	-	2	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	508543	508586	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	508587	508674	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	508675	508968	1	-	2	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	508675	508968	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	508969	509038	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	509039	509143	1	-	2	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	509039	509143	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	509144	509227	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	509228	509312	1	-	0	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	509228	509312	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	509313	509392	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	509393	509469	1	-	2	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	509393	509469	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	509470	509600	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	509601	509787	0.97	-	0	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	509601	509787	.	-	.	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	start_codon	509785	509787	.	-	0	transcript_id "Ledus.S3G007700.t1"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	transcript	507734	509787	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	stop_codon	507731	507733	.	-	0	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	507734	507859	1	-	0	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	507734	507859	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	507860	507982	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	507983	508026	1	-	2	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	507983	508026	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	508027	508117	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	508118	508208	1	-	0	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	508118	508208	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	508209	508281	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	508282	508464	1	-	0	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	508282	508464	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	508465	508542	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	508543	508586	1	-	2	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	508543	508586	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	508587	508674	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	508675	508968	1	-	2	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	508675	508968	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	508969	509056	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	509057	509143	0.99	-	2	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	509057	509143	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	509144	509227	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	509228	509312	1	-	0	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	509228	509312	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	509313	509392	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	509393	509469	1	-	2	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	509393	509469	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	intron	509470	509600	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	CDS	509601	509787	0.96	-	0	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	exon	509601	509787	.	-	.	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
Ledus.S3	AUGUSTUS	start_codon	509785	509787	.	-	0	transcript_id "Ledus.S3G007700.t2"; gene_id "Ledus.S3G007700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10335.t1 is derived from g11365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14297406	14301656	.	-	.	Ledus.S3G181200
Ledus.S3	AUGUSTUS	transcript	14297406	14301656	.	-	.	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	stop_codon	14297403	14297405	.	-	0	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	CDS	14297406	14297487	0.81	-	1	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	exon	14297406	14297487	.	-	.	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	intron	14297488	14297694	.	-	.	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	CDS	14297695	14297714	0.79	-	0	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	exon	14297695	14297714	.	-	.	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	intron	14297715	14298163	.	-	.	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	CDS	14298164	14300395	0.84	-	0	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	exon	14298164	14300395	.	-	.	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	intron	14300396	14300675	.	-	.	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	CDS	14300676	14301656	0.62	-	0	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	exon	14300676	14301656	.	-	.	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
Ledus.S3	AUGUSTUS	start_codon	14301654	14301656	.	-	0	transcript_id "Ledus.S3G181200.t1"; gene_id "Ledus.S3G181200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5245.t1 is derived from g2684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22657619	22658632	.	+	.	Ledus.S1G266600
Ledus.S1	AUGUSTUS	transcript	22657619	22658632	.	+	.	transcript_id "Ledus.S1G266600.t1"; gene_id "Ledus.S1G266600"
Ledus.S1	AUGUSTUS	start_codon	22657619	22657621	.	+	0	transcript_id "Ledus.S1G266600.t1"; gene_id "Ledus.S1G266600"
Ledus.S1	AUGUSTUS	CDS	22657619	22658632	0.99	+	0	transcript_id "Ledus.S1G266600.t1"; gene_id "Ledus.S1G266600"
Ledus.S1	AUGUSTUS	exon	22657619	22658632	.	+	.	transcript_id "Ledus.S1G266600.t1"; gene_id "Ledus.S1G266600"
Ledus.S1	AUGUSTUS	stop_codon	22658633	22658635	.	+	0	transcript_id "Ledus.S1G266600.t1"; gene_id "Ledus.S1G266600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11547.t1 is derived from g5165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5220227	5221363	.	-	.	Ledus.S4G070300
Ledus.S4	AUGUSTUS	transcript	5220227	5221363	.	-	.	transcript_id "Ledus.S4G070300.t1"; gene_id "Ledus.S4G070300"
Ledus.S4	AUGUSTUS	stop_codon	5220224	5220226	.	-	0	transcript_id "Ledus.S4G070300.t1"; gene_id "Ledus.S4G070300"
Ledus.S4	AUGUSTUS	CDS	5220227	5221363	0.77	-	0	transcript_id "Ledus.S4G070300.t1"; gene_id "Ledus.S4G070300"
Ledus.S4	AUGUSTUS	exon	5220227	5221363	.	-	.	transcript_id "Ledus.S4G070300.t1"; gene_id "Ledus.S4G070300"
Ledus.S4	AUGUSTUS	start_codon	5221361	5221363	.	-	0	transcript_id "Ledus.S4G070300.t1"; gene_id "Ledus.S4G070300"
# This transcript jg3615.t2 is derived from g1051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3615.t3 is derived from g1051.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg3616.t1 is derived from g1052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10226951	10230780	.	+	.	Ledus.S1G103700
Ledus.S1	AUGUSTUS	transcript	10226951	10230713	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	start_codon	10226951	10226953	.	+	0	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10226951	10227356	1	+	0	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10226951	10227356	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10227357	10227545	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10227546	10227994	0.92	+	2	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10227546	10227994	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10227995	10228127	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10228128	10228325	0.98	+	0	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10228128	10228325	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10228326	10228476	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10228477	10229079	0.82	+	0	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10228477	10229079	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10229080	10229226	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10229227	10229301	1	+	0	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10229227	10229301	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10229302	10229630	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10229631	10229709	1	+	0	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10229631	10229709	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10229710	10229874	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10229875	10229890	0.9	+	2	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10229875	10229890	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10229891	10230256	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10230257	10230325	1	+	1	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10230257	10230325	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10230326	10230503	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10230504	10230543	1	+	1	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10230504	10230543	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10230544	10230689	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10230690	10230713	0.99	+	0	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10230690	10230713	.	+	.	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	stop_codon	10230714	10230716	.	+	0	transcript_id "Ledus.S1G103700.t1"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	transcript	10226951	10230780	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	start_codon	10226951	10226953	.	+	0	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10226951	10227356	1	+	0	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10226951	10227356	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10227357	10227545	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10227546	10227994	0.95	+	2	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10227546	10227994	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10227995	10228127	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10228128	10228325	0.96	+	0	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10228128	10228325	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10228326	10228476	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10228477	10229079	0.83	+	0	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10228477	10229079	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10229080	10229226	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10229227	10229301	1	+	0	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10229227	10229301	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10229302	10229630	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10229631	10229709	1	+	0	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10229631	10229709	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10229710	10229874	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10229875	10229890	0.89	+	2	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10229875	10229890	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10229891	10230256	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10230257	10230325	1	+	1	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10230257	10230325	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10230326	10230503	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10230504	10230543	1	+	1	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10230504	10230543	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10230544	10230684	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10230685	10230780	0.77	+	0	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10230685	10230780	.	+	.	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	stop_codon	10230781	10230783	.	+	0	transcript_id "Ledus.S1G103700.t2"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	transcript	10226951	10230780	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	start_codon	10226951	10226953	.	+	0	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10226951	10227337	0.64	+	0	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10226951	10227337	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10227338	10227436	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10227437	10227467	0.52	+	0	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10227437	10227467	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10227468	10227545	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10227546	10227994	0.98	+	2	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10227546	10227994	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10227995	10228127	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10228128	10228325	0.93	+	0	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10228128	10228325	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10228326	10228476	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10228477	10229079	0.82	+	0	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10228477	10229079	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10229080	10229226	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10229227	10229301	1	+	0	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10229227	10229301	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10229302	10229630	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10229631	10229709	1	+	0	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10229631	10229709	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10229710	10229874	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10229875	10229890	0.81	+	2	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10229875	10229890	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10229891	10230256	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10230257	10230325	1	+	1	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10230257	10230325	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10230326	10230503	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10230504	10230543	1	+	1	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10230504	10230543	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	intron	10230544	10230684	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	CDS	10230685	10230780	0.63	+	0	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	exon	10230685	10230780	.	+	.	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
Ledus.S1	AUGUSTUS	stop_codon	10230781	10230783	.	+	0	transcript_id "Ledus.S1G103700.t3"; gene_id "Ledus.S1G103700"
# This transcript jg1319.t2 is derived from g8180.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1319.t3 is derived from g8180.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1320.t1 is derived from g8181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9245561	9247197	.	-	.	Ledus.S2G120200
Ledus.S2	AUGUSTUS	transcript	9245561	9247197	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	stop_codon	9245558	9245560	.	-	0	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	CDS	9245561	9245590	0.95	-	0	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	exon	9245561	9245590	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	intron	9245591	9245685	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	CDS	9245686	9245768	1	-	2	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	exon	9245686	9245768	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	intron	9245769	9245844	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	CDS	9245845	9245947	1	-	0	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	exon	9245845	9245947	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	intron	9245948	9246027	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	CDS	9246028	9246120	1	-	0	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	exon	9246028	9246120	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	intron	9246121	9246193	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	CDS	9246194	9246306	1	-	2	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	exon	9246194	9246306	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	intron	9246307	9246370	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	CDS	9246371	9246429	1	-	1	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	exon	9246371	9246429	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	intron	9246430	9246541	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	CDS	9246542	9246670	1	-	1	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	exon	9246542	9246670	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	intron	9246671	9246759	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	CDS	9246760	9246896	1	-	0	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	exon	9246760	9246896	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	intron	9246897	9246978	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	CDS	9246979	9247197	0.38	-	0	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	exon	9246979	9247197	.	-	.	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
Ledus.S2	AUGUSTUS	start_codon	9247195	9247197	.	-	0	transcript_id "Ledus.S2G120200.t1"; gene_id "Ledus.S2G120200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2457.t1 is derived from g9320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18242407	18243597	.	-	.	Ledus.S2G233900
Ledus.S2	AUGUSTUS	transcript	18242407	18243597	.	-	.	transcript_id "Ledus.S2G233900.t1"; gene_id "Ledus.S2G233900"
Ledus.S2	AUGUSTUS	stop_codon	18242404	18242406	.	-	0	transcript_id "Ledus.S2G233900.t1"; gene_id "Ledus.S2G233900"
Ledus.S2	AUGUSTUS	CDS	18242407	18243005	0.43	-	2	transcript_id "Ledus.S2G233900.t1"; gene_id "Ledus.S2G233900"
Ledus.S2	AUGUSTUS	exon	18242407	18243005	.	-	.	transcript_id "Ledus.S2G233900.t1"; gene_id "Ledus.S2G233900"
Ledus.S2	AUGUSTUS	intron	18243006	18243302	.	-	.	transcript_id "Ledus.S2G233900.t1"; gene_id "Ledus.S2G233900"
Ledus.S2	AUGUSTUS	CDS	18243303	18243597	0.76	-	0	transcript_id "Ledus.S2G233900.t1"; gene_id "Ledus.S2G233900"
Ledus.S2	AUGUSTUS	exon	18243303	18243597	.	-	.	transcript_id "Ledus.S2G233900.t1"; gene_id "Ledus.S2G233900"
Ledus.S2	AUGUSTUS	start_codon	18243595	18243597	.	-	0	transcript_id "Ledus.S2G233900.t1"; gene_id "Ledus.S2G233900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3135.t1 is derived from g570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6187383	6187712	.	-	.	Ledus.S1G055600
Ledus.S1	AUGUSTUS	transcript	6187383	6187712	.	-	.	transcript_id "Ledus.S1G055600.t1"; gene_id "Ledus.S1G055600"
Ledus.S1	AUGUSTUS	stop_codon	6187380	6187382	.	-	0	transcript_id "Ledus.S1G055600.t1"; gene_id "Ledus.S1G055600"
Ledus.S1	AUGUSTUS	CDS	6187383	6187712	0.94	-	0	transcript_id "Ledus.S1G055600.t1"; gene_id "Ledus.S1G055600"
Ledus.S1	AUGUSTUS	exon	6187383	6187712	.	-	.	transcript_id "Ledus.S1G055600.t1"; gene_id "Ledus.S1G055600"
Ledus.S1	AUGUSTUS	start_codon	6187710	6187712	.	-	0	transcript_id "Ledus.S1G055600.t1"; gene_id "Ledus.S1G055600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4425.t1 is derived from g1861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17051618	17055873	.	+	.	Ledus.S1G184600
Ledus.S1	AUGUSTUS	transcript	17051618	17055873	.	+	.	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	start_codon	17051618	17051620	.	+	0	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	CDS	17051618	17052580	0.51	+	0	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	exon	17051618	17052580	.	+	.	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	intron	17052581	17052672	.	+	.	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	CDS	17052673	17053140	1	+	0	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	exon	17052673	17053140	.	+	.	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	intron	17053141	17053323	.	+	.	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	CDS	17053324	17054472	0.98	+	0	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	exon	17053324	17054472	.	+	.	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	intron	17054473	17054557	.	+	.	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	CDS	17054558	17054741	0.73	+	0	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	exon	17054558	17054741	.	+	.	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	intron	17054742	17054842	.	+	.	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	CDS	17054843	17055873	0.69	+	2	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	exon	17054843	17055873	.	+	.	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
Ledus.S1	AUGUSTUS	stop_codon	17055874	17055876	.	+	0	transcript_id "Ledus.S1G184600.t1"; gene_id "Ledus.S1G184600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9374.t1 is derived from g10404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6425395	6426079	.	-	.	Ledus.S3G085100
Ledus.S3	AUGUSTUS	transcript	6425395	6426079	.	-	.	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	stop_codon	6425392	6425394	.	-	0	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	CDS	6425395	6425427	0.99	-	0	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	exon	6425395	6425427	.	-	.	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	intron	6425428	6425518	.	-	.	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	CDS	6425519	6425614	0.93	-	0	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	exon	6425519	6425614	.	-	.	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	intron	6425615	6425751	.	-	.	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	CDS	6425752	6425877	0.94	-	0	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	exon	6425752	6425877	.	-	.	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	intron	6425878	6426076	.	-	.	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	CDS	6426077	6426079	0.27	-	0	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	exon	6426077	6426079	.	-	.	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
Ledus.S3	AUGUSTUS	start_codon	6426077	6426079	.	-	0	transcript_id "Ledus.S3G085100.t1"; gene_id "Ledus.S3G085100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12642.t1 is derived from g6264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13581372	13584441	.	+	.	Ledus.S4G179800
Ledus.S4	AUGUSTUS	transcript	13581372	13584441	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	start_codon	13581372	13581374	.	+	0	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	CDS	13581372	13581626	0.69	+	0	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	exon	13581372	13581626	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	intron	13581627	13581788	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	CDS	13581789	13581915	1	+	0	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	exon	13581789	13581915	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	intron	13581916	13582069	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	CDS	13582070	13582414	1	+	2	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	exon	13582070	13582414	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	intron	13582415	13582578	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	CDS	13582579	13582744	1	+	2	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	exon	13582579	13582744	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	intron	13582745	13582978	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	CDS	13582979	13583105	1	+	1	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	exon	13582979	13583105	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	intron	13583106	13583500	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	CDS	13583501	13583542	0.89	+	0	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	exon	13583501	13583542	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	intron	13583543	13583645	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	CDS	13583646	13583690	0.52	+	0	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	exon	13583646	13583690	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	intron	13583691	13583960	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	CDS	13583961	13584167	1	+	0	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	exon	13583961	13584167	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	intron	13584168	13584321	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	CDS	13584322	13584441	0.9	+	0	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	exon	13584322	13584441	.	+	.	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
Ledus.S4	AUGUSTUS	stop_codon	13584442	13584444	.	+	0	transcript_id "Ledus.S4G179800.t1"; gene_id "Ledus.S4G179800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11108.t1 is derived from g4726.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1894582	1895181	.	+	.	Ledus.S4G026400
Ledus.S4	AUGUSTUS	transcript	1894582	1895181	.	+	.	transcript_id "Ledus.S4G026400.t1"; gene_id "Ledus.S4G026400"
Ledus.S4	AUGUSTUS	start_codon	1894582	1894584	.	+	0	transcript_id "Ledus.S4G026400.t1"; gene_id "Ledus.S4G026400"
Ledus.S4	AUGUSTUS	CDS	1894582	1895181	0.98	+	0	transcript_id "Ledus.S4G026400.t1"; gene_id "Ledus.S4G026400"
Ledus.S4	AUGUSTUS	exon	1894582	1895181	.	+	.	transcript_id "Ledus.S4G026400.t1"; gene_id "Ledus.S4G026400"
Ledus.S4	AUGUSTUS	stop_codon	1895182	1895184	.	+	0	transcript_id "Ledus.S4G026400.t1"; gene_id "Ledus.S4G026400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8680.t1 is derived from g9710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1332636	1333148	.	+	.	Ledus.S3G015700
Ledus.S3	AUGUSTUS	transcript	1332636	1333148	.	+	.	transcript_id "Ledus.S3G015700.t1"; gene_id "Ledus.S3G015700"
Ledus.S3	AUGUSTUS	start_codon	1332636	1332638	.	+	0	transcript_id "Ledus.S3G015700.t1"; gene_id "Ledus.S3G015700"
Ledus.S3	AUGUSTUS	CDS	1332636	1333148	0.39	+	0	transcript_id "Ledus.S3G015700.t1"; gene_id "Ledus.S3G015700"
Ledus.S3	AUGUSTUS	exon	1332636	1333148	.	+	.	transcript_id "Ledus.S3G015700.t1"; gene_id "Ledus.S3G015700"
Ledus.S3	AUGUSTUS	stop_codon	1333149	1333151	.	+	0	transcript_id "Ledus.S3G015700.t1"; gene_id "Ledus.S3G015700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9905.t1 is derived from g10935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11080352	11083562	.	+	.	Ledus.S3G138200
Ledus.S3	AUGUSTUS	transcript	11080352	11083562	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	start_codon	11080352	11080354	.	+	0	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11080352	11080711	0.68	+	0	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11080352	11080711	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11080712	11080800	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11080801	11080848	1	+	0	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11080801	11080848	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11080849	11080945	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11080946	11080996	0.95	+	0	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11080946	11080996	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11080997	11081105	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11081106	11081149	1	+	0	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11081106	11081149	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11081150	11081285	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11081286	11081349	1	+	1	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11081286	11081349	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11081350	11081559	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11081560	11081649	1	+	0	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11081560	11081649	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11081650	11081845	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11081846	11081937	1	+	0	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11081846	11081937	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11081938	11082057	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11082058	11082142	1	+	1	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11082058	11082142	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11082143	11082365	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11082366	11082451	1	+	0	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11082366	11082451	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11082452	11082596	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11082597	11082706	1	+	1	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11082597	11082706	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11082707	11082798	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11082799	11082891	1	+	2	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11082799	11082891	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11082892	11083031	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11083032	11083096	0.95	+	2	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11083032	11083096	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11083097	11083216	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11083217	11083357	1	+	0	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11083217	11083357	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	intron	11083358	11083523	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	CDS	11083524	11083562	0.83	+	0	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	exon	11083524	11083562	.	+	.	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
Ledus.S3	AUGUSTUS	stop_codon	11083563	11083565	.	+	0	transcript_id "Ledus.S3G138200.t1"; gene_id "Ledus.S3G138200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1833.t1 is derived from g8696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12865513	12866430	.	-	.	Ledus.S2G171500
Ledus.S2	AUGUSTUS	transcript	12865513	12866430	.	-	.	transcript_id "Ledus.S2G171500.t1"; gene_id "Ledus.S2G171500"
Ledus.S2	AUGUSTUS	stop_codon	12865510	12865512	.	-	0	transcript_id "Ledus.S2G171500.t1"; gene_id "Ledus.S2G171500"
Ledus.S2	AUGUSTUS	CDS	12865513	12865869	0.24	-	0	transcript_id "Ledus.S2G171500.t1"; gene_id "Ledus.S2G171500"
Ledus.S2	AUGUSTUS	exon	12865513	12865869	.	-	.	transcript_id "Ledus.S2G171500.t1"; gene_id "Ledus.S2G171500"
Ledus.S2	AUGUSTUS	intron	12865870	12866001	.	-	.	transcript_id "Ledus.S2G171500.t1"; gene_id "Ledus.S2G171500"
Ledus.S2	AUGUSTUS	CDS	12866002	12866203	0.58	-	1	transcript_id "Ledus.S2G171500.t1"; gene_id "Ledus.S2G171500"
Ledus.S2	AUGUSTUS	exon	12866002	12866203	.	-	.	transcript_id "Ledus.S2G171500.t1"; gene_id "Ledus.S2G171500"
Ledus.S2	AUGUSTUS	intron	12866204	12866323	.	-	.	transcript_id "Ledus.S2G171500.t1"; gene_id "Ledus.S2G171500"
Ledus.S2	AUGUSTUS	CDS	12866324	12866430	0.35	-	0	transcript_id "Ledus.S2G171500.t1"; gene_id "Ledus.S2G171500"
Ledus.S2	AUGUSTUS	exon	12866324	12866430	.	-	.	transcript_id "Ledus.S2G171500.t1"; gene_id "Ledus.S2G171500"
Ledus.S2	AUGUSTUS	start_codon	12866428	12866430	.	-	0	transcript_id "Ledus.S2G171500.t1"; gene_id "Ledus.S2G171500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11559.t1 is derived from g5177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5273833	5275599	.	+	.	Ledus.S4G071500
Ledus.S4	AUGUSTUS	transcript	5273833	5275599	.	+	.	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	start_codon	5273833	5273835	.	+	0	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	CDS	5273833	5273955	0.77	+	0	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	exon	5273833	5273955	.	+	.	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	intron	5273956	5274142	.	+	.	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	CDS	5274143	5274343	0.99	+	0	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	exon	5274143	5274343	.	+	.	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	intron	5274344	5274686	.	+	.	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	CDS	5274687	5274858	1	+	0	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	exon	5274687	5274858	.	+	.	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	intron	5274859	5274958	.	+	.	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	CDS	5274959	5275054	1	+	2	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	exon	5274959	5275054	.	+	.	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	intron	5275055	5275186	.	+	.	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	CDS	5275187	5275599	0.95	+	2	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	exon	5275187	5275599	.	+	.	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
Ledus.S4	AUGUSTUS	stop_codon	5275600	5275602	.	+	0	transcript_id "Ledus.S4G071500.t1"; gene_id "Ledus.S4G071500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11711.t1 is derived from g5330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6174646	6175172	.	-	.	Ledus.S4G086700
Ledus.S4	AUGUSTUS	transcript	6174646	6175172	.	-	.	transcript_id "Ledus.S4G086700.t1"; gene_id "Ledus.S4G086700"
Ledus.S4	AUGUSTUS	stop_codon	6174643	6174645	.	-	0	transcript_id "Ledus.S4G086700.t1"; gene_id "Ledus.S4G086700"
Ledus.S4	AUGUSTUS	CDS	6174646	6175039	1	-	1	transcript_id "Ledus.S4G086700.t1"; gene_id "Ledus.S4G086700"
Ledus.S4	AUGUSTUS	exon	6174646	6175039	.	-	.	transcript_id "Ledus.S4G086700.t1"; gene_id "Ledus.S4G086700"
Ledus.S4	AUGUSTUS	intron	6175040	6175131	.	-	.	transcript_id "Ledus.S4G086700.t1"; gene_id "Ledus.S4G086700"
Ledus.S4	AUGUSTUS	CDS	6175132	6175172	0.47	-	0	transcript_id "Ledus.S4G086700.t1"; gene_id "Ledus.S4G086700"
Ledus.S4	AUGUSTUS	exon	6175132	6175172	.	-	.	transcript_id "Ledus.S4G086700.t1"; gene_id "Ledus.S4G086700"
Ledus.S4	AUGUSTUS	start_codon	6175170	6175172	.	-	0	transcript_id "Ledus.S4G086700.t1"; gene_id "Ledus.S4G086700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6859.t1 is derived from g4303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34767806	34768574	.	-	.	Ledus.S1G428000
Ledus.S1	AUGUSTUS	transcript	34767806	34768574	.	-	.	transcript_id "Ledus.S1G428000.t1"; gene_id "Ledus.S1G428000"
Ledus.S1	AUGUSTUS	stop_codon	34767803	34767805	.	-	0	transcript_id "Ledus.S1G428000.t1"; gene_id "Ledus.S1G428000"
Ledus.S1	AUGUSTUS	CDS	34767806	34767895	0.59	-	0	transcript_id "Ledus.S1G428000.t1"; gene_id "Ledus.S1G428000"
Ledus.S1	AUGUSTUS	exon	34767806	34767895	.	-	.	transcript_id "Ledus.S1G428000.t1"; gene_id "Ledus.S1G428000"
Ledus.S1	AUGUSTUS	intron	34767896	34768136	.	-	.	transcript_id "Ledus.S1G428000.t1"; gene_id "Ledus.S1G428000"
Ledus.S1	AUGUSTUS	CDS	34768137	34768366	0.44	-	2	transcript_id "Ledus.S1G428000.t1"; gene_id "Ledus.S1G428000"
Ledus.S1	AUGUSTUS	exon	34768137	34768366	.	-	.	transcript_id "Ledus.S1G428000.t1"; gene_id "Ledus.S1G428000"
Ledus.S1	AUGUSTUS	intron	34768367	34768441	.	-	.	transcript_id "Ledus.S1G428000.t1"; gene_id "Ledus.S1G428000"
Ledus.S1	AUGUSTUS	CDS	34768442	34768574	0.57	-	0	transcript_id "Ledus.S1G428000.t1"; gene_id "Ledus.S1G428000"
Ledus.S1	AUGUSTUS	exon	34768442	34768574	.	-	.	transcript_id "Ledus.S1G428000.t1"; gene_id "Ledus.S1G428000"
Ledus.S1	AUGUSTUS	start_codon	34768572	34768574	.	-	0	transcript_id "Ledus.S1G428000.t1"; gene_id "Ledus.S1G428000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5076.t1 is derived from g2515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21472814	21473497	.	-	.	Ledus.S1G249700
Ledus.S1	AUGUSTUS	transcript	21472814	21473497	.	-	.	transcript_id "Ledus.S1G249700.t1"; gene_id "Ledus.S1G249700"
Ledus.S1	AUGUSTUS	stop_codon	21472811	21472813	.	-	0	transcript_id "Ledus.S1G249700.t1"; gene_id "Ledus.S1G249700"
Ledus.S1	AUGUSTUS	CDS	21472814	21473497	0.56	-	0	transcript_id "Ledus.S1G249700.t1"; gene_id "Ledus.S1G249700"
Ledus.S1	AUGUSTUS	exon	21472814	21473497	.	-	.	transcript_id "Ledus.S1G249700.t1"; gene_id "Ledus.S1G249700"
Ledus.S1	AUGUSTUS	start_codon	21473495	21473497	.	-	0	transcript_id "Ledus.S1G249700.t1"; gene_id "Ledus.S1G249700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1220.t1 is derived from g8081.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8706335	8707864	.	+	.	Ledus.S2G110200
Ledus.S2	AUGUSTUS	transcript	8706335	8707864	.	+	.	transcript_id "Ledus.S2G110200.t1"; gene_id "Ledus.S2G110200"
Ledus.S2	AUGUSTUS	start_codon	8706335	8706337	.	+	0	transcript_id "Ledus.S2G110200.t1"; gene_id "Ledus.S2G110200"
Ledus.S2	AUGUSTUS	CDS	8706335	8707864	0.9	+	0	transcript_id "Ledus.S2G110200.t1"; gene_id "Ledus.S2G110200"
Ledus.S2	AUGUSTUS	exon	8706335	8707864	.	+	.	transcript_id "Ledus.S2G110200.t1"; gene_id "Ledus.S2G110200"
Ledus.S2	AUGUSTUS	stop_codon	8707865	8707867	.	+	0	transcript_id "Ledus.S2G110200.t1"; gene_id "Ledus.S2G110200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3963.t1 is derived from g1399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13777485	13778482	.	-	.	Ledus.S1G138400
Ledus.S1	AUGUSTUS	transcript	13777485	13778482	.	-	.	transcript_id "Ledus.S1G138400.t1"; gene_id "Ledus.S1G138400"
Ledus.S1	AUGUSTUS	stop_codon	13777482	13777484	.	-	0	transcript_id "Ledus.S1G138400.t1"; gene_id "Ledus.S1G138400"
Ledus.S1	AUGUSTUS	CDS	13777485	13777827	0.98	-	1	transcript_id "Ledus.S1G138400.t1"; gene_id "Ledus.S1G138400"
Ledus.S1	AUGUSTUS	exon	13777485	13777827	.	-	.	transcript_id "Ledus.S1G138400.t1"; gene_id "Ledus.S1G138400"
Ledus.S1	AUGUSTUS	intron	13777828	13778045	.	-	.	transcript_id "Ledus.S1G138400.t1"; gene_id "Ledus.S1G138400"
Ledus.S1	AUGUSTUS	CDS	13778046	13778482	0.97	-	0	transcript_id "Ledus.S1G138400.t1"; gene_id "Ledus.S1G138400"
Ledus.S1	AUGUSTUS	exon	13778046	13778482	.	-	.	transcript_id "Ledus.S1G138400.t1"; gene_id "Ledus.S1G138400"
Ledus.S1	AUGUSTUS	start_codon	13778480	13778482	.	-	0	transcript_id "Ledus.S1G138400.t1"; gene_id "Ledus.S1G138400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12205.t1 is derived from g5824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10356020	10356223	.	+	.	Ledus.S4G136100
Ledus.S4	AUGUSTUS	transcript	10356020	10356223	.	+	.	transcript_id "Ledus.S4G136100.t1"; gene_id "Ledus.S4G136100"
Ledus.S4	AUGUSTUS	start_codon	10356020	10356022	.	+	0	transcript_id "Ledus.S4G136100.t1"; gene_id "Ledus.S4G136100"
Ledus.S4	AUGUSTUS	CDS	10356020	10356223	0.85	+	0	transcript_id "Ledus.S4G136100.t1"; gene_id "Ledus.S4G136100"
Ledus.S4	AUGUSTUS	exon	10356020	10356223	.	+	.	transcript_id "Ledus.S4G136100.t1"; gene_id "Ledus.S4G136100"
Ledus.S4	AUGUSTUS	stop_codon	10356224	10356226	.	+	0	transcript_id "Ledus.S4G136100.t1"; gene_id "Ledus.S4G136100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1222.t1 is derived from g8083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8710371	8716386	.	+	.	Ledus.S2G110400
Ledus.S2	AUGUSTUS	transcript	8710371	8716386	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	start_codon	8710371	8710373	.	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8710371	8710446	0.76	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8710371	8710446	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8710447	8710747	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8710748	8710926	1	+	2	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8710748	8710926	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8710927	8711009	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8711010	8711102	1	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8711010	8711102	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8711103	8711216	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8711217	8711327	1	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8711217	8711327	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8711328	8711500	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8711501	8711577	1	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8711501	8711577	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8711578	8711711	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8711712	8711807	1	+	1	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8711712	8711807	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8711808	8712057	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8712058	8712097	1	+	1	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8712058	8712097	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8712098	8712185	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8712186	8712359	0.87	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8712186	8712359	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8712360	8712537	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8712538	8712611	1	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8712538	8712611	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8712612	8712777	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8712778	8712862	1	+	1	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8712778	8712862	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8712863	8712972	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8712973	8713200	1	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8712973	8713200	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8713201	8713298	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8713299	8713616	0.61	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8713299	8713616	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8713617	8713707	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8713708	8713787	1	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8713708	8713787	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8713788	8713907	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8713908	8713929	1	+	1	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8713908	8713929	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8713930	8714058	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8714059	8714163	0.5	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8714059	8714163	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8714164	8714440	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8714441	8714665	0.9	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8714441	8714665	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8714666	8714786	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8714787	8714974	1	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8714787	8714974	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8714975	8715055	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8715056	8715113	1	+	1	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8715056	8715113	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8715114	8715193	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8715194	8715253	1	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8715194	8715253	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8715254	8715464	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8715465	8715533	1	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8715465	8715533	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8715534	8715685	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8715686	8715787	1	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8715686	8715787	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8715788	8715864	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8715865	8715942	0.98	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8715865	8715942	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8715943	8716063	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8716064	8716102	0.94	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8716064	8716102	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	intron	8716103	8716203	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	CDS	8716204	8716386	0.98	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	exon	8716204	8716386	.	+	.	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
Ledus.S2	AUGUSTUS	stop_codon	8716387	8716389	.	+	0	transcript_id "Ledus.S2G110400.t1"; gene_id "Ledus.S2G110400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2506.t1 is derived from g9369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18508351	18510596	.	+	.	Ledus.S2G238800
Ledus.S2	AUGUSTUS	transcript	18508351	18510596	.	+	.	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	start_codon	18508351	18508353	.	+	0	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	CDS	18508351	18508514	0.64	+	0	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	exon	18508351	18508514	.	+	.	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	intron	18508515	18508716	.	+	.	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	CDS	18508717	18508766	0.95	+	1	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	exon	18508717	18508766	.	+	.	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	intron	18508767	18509763	.	+	.	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	CDS	18509764	18509873	1	+	2	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	exon	18509764	18509873	.	+	.	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	intron	18509874	18510088	.	+	.	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	CDS	18510089	18510196	1	+	0	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	exon	18510089	18510196	.	+	.	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	intron	18510197	18510350	.	+	.	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	CDS	18510351	18510422	1	+	0	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	exon	18510351	18510422	.	+	.	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	intron	18510423	18510527	.	+	.	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	CDS	18510528	18510596	0.84	+	0	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	exon	18510528	18510596	.	+	.	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
Ledus.S2	AUGUSTUS	stop_codon	18510597	18510599	.	+	0	transcript_id "Ledus.S2G238800.t1"; gene_id "Ledus.S2G238800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12848.t1 is derived from g11882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	192609	193298	.	-	.	Ledus.C11G001200
Ledus.C11	AUGUSTUS	transcript	192609	193298	.	-	.	transcript_id "Ledus.C11G001200.t1"; gene_id "Ledus.C11G001200"
Ledus.C11	AUGUSTUS	stop_codon	192606	192608	.	-	0	transcript_id "Ledus.C11G001200.t1"; gene_id "Ledus.C11G001200"
Ledus.C11	AUGUSTUS	CDS	192609	192979	0.91	-	2	transcript_id "Ledus.C11G001200.t1"; gene_id "Ledus.C11G001200"
Ledus.C11	AUGUSTUS	exon	192609	192979	.	-	.	transcript_id "Ledus.C11G001200.t1"; gene_id "Ledus.C11G001200"
Ledus.C11	AUGUSTUS	intron	192980	193168	.	-	.	transcript_id "Ledus.C11G001200.t1"; gene_id "Ledus.C11G001200"
Ledus.C11	AUGUSTUS	CDS	193169	193298	0.92	-	0	transcript_id "Ledus.C11G001200.t1"; gene_id "Ledus.C11G001200"
Ledus.C11	AUGUSTUS	exon	193169	193298	.	-	.	transcript_id "Ledus.C11G001200.t1"; gene_id "Ledus.C11G001200"
Ledus.C11	AUGUSTUS	start_codon	193296	193298	.	-	0	transcript_id "Ledus.C11G001200.t1"; gene_id "Ledus.C11G001200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4859.t1 is derived from g2297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20418437	20420260	.	-	.	Ledus.S1G228000
Ledus.S1	AUGUSTUS	transcript	20418437	20420260	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	stop_codon	20418434	20418436	.	-	0	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	CDS	20418437	20418662	1	-	1	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	exon	20418437	20418662	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	intron	20418663	20418756	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	CDS	20418757	20418889	1	-	2	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	exon	20418757	20418889	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	intron	20418890	20418979	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	CDS	20418980	20419096	1	-	2	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	exon	20418980	20419096	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	intron	20419097	20419212	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	CDS	20419213	20419309	1	-	0	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	exon	20419213	20419309	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	intron	20419310	20419407	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	CDS	20419408	20419515	0.98	-	0	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	exon	20419408	20419515	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	intron	20419516	20419627	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	CDS	20419628	20419774	0.96	-	0	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	exon	20419628	20419774	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	intron	20419775	20419921	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	CDS	20419922	20420024	0.92	-	1	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	exon	20419922	20420024	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	intron	20420025	20420165	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	CDS	20420166	20420260	0.92	-	0	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	exon	20420166	20420260	.	-	.	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
Ledus.S1	AUGUSTUS	start_codon	20420258	20420260	.	-	0	transcript_id "Ledus.S1G228000.t1"; gene_id "Ledus.S1G228000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7249.t1 is derived from g11920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	423338	423914	.	+	.	Ledus.S5G002700
Ledus.S5	AUGUSTUS	transcript	423338	423914	.	+	.	transcript_id "Ledus.S5G002700.t1"; gene_id "Ledus.S5G002700"
Ledus.S5	AUGUSTUS	start_codon	423338	423340	.	+	0	transcript_id "Ledus.S5G002700.t1"; gene_id "Ledus.S5G002700"
Ledus.S5	AUGUSTUS	CDS	423338	423391	0.83	+	0	transcript_id "Ledus.S5G002700.t1"; gene_id "Ledus.S5G002700"
Ledus.S5	AUGUSTUS	exon	423338	423391	.	+	.	transcript_id "Ledus.S5G002700.t1"; gene_id "Ledus.S5G002700"
Ledus.S5	AUGUSTUS	intron	423392	423674	.	+	.	transcript_id "Ledus.S5G002700.t1"; gene_id "Ledus.S5G002700"
Ledus.S5	AUGUSTUS	CDS	423675	423914	0.57	+	0	transcript_id "Ledus.S5G002700.t1"; gene_id "Ledus.S5G002700"
Ledus.S5	AUGUSTUS	exon	423675	423914	.	+	.	transcript_id "Ledus.S5G002700.t1"; gene_id "Ledus.S5G002700"
Ledus.S5	AUGUSTUS	stop_codon	423915	423917	.	+	0	transcript_id "Ledus.S5G002700.t1"; gene_id "Ledus.S5G002700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11370.t1 is derived from g4988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3849875	3850480	.	+	.	Ledus.S4G052600
Ledus.S4	AUGUSTUS	transcript	3849875	3850480	.	+	.	transcript_id "Ledus.S4G052600.t1"; gene_id "Ledus.S4G052600"
Ledus.S4	AUGUSTUS	start_codon	3849875	3849877	.	+	0	transcript_id "Ledus.S4G052600.t1"; gene_id "Ledus.S4G052600"
Ledus.S4	AUGUSTUS	CDS	3849875	3850109	0.63	+	0	transcript_id "Ledus.S4G052600.t1"; gene_id "Ledus.S4G052600"
Ledus.S4	AUGUSTUS	exon	3849875	3850109	.	+	.	transcript_id "Ledus.S4G052600.t1"; gene_id "Ledus.S4G052600"
Ledus.S4	AUGUSTUS	intron	3850110	3850403	.	+	.	transcript_id "Ledus.S4G052600.t1"; gene_id "Ledus.S4G052600"
Ledus.S4	AUGUSTUS	CDS	3850404	3850480	0.99	+	2	transcript_id "Ledus.S4G052600.t1"; gene_id "Ledus.S4G052600"
Ledus.S4	AUGUSTUS	exon	3850404	3850480	.	+	.	transcript_id "Ledus.S4G052600.t1"; gene_id "Ledus.S4G052600"
Ledus.S4	AUGUSTUS	stop_codon	3850481	3850483	.	+	0	transcript_id "Ledus.S4G052600.t1"; gene_id "Ledus.S4G052600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5140.t1 is derived from g2579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21910619	21911995	.	+	.	Ledus.S1G256100
Ledus.S1	AUGUSTUS	transcript	21910619	21911995	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	start_codon	21910619	21910621	.	+	0	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	CDS	21910619	21910666	0.42	+	0	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	exon	21910619	21910666	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	intron	21910667	21910820	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	CDS	21910821	21910848	1	+	0	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	exon	21910821	21910848	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	intron	21910849	21911023	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	CDS	21911024	21911110	1	+	2	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	exon	21911024	21911110	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	intron	21911111	21911274	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	CDS	21911275	21911333	1	+	2	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	exon	21911275	21911333	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	intron	21911334	21911417	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	CDS	21911418	21911459	1	+	0	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	exon	21911418	21911459	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	intron	21911460	21911554	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	CDS	21911555	21911628	1	+	0	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	exon	21911555	21911628	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	intron	21911629	21911746	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	CDS	21911747	21911844	1	+	1	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	exon	21911747	21911844	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	intron	21911845	21911960	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	CDS	21911961	21911995	0.98	+	2	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	exon	21911961	21911995	.	+	.	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
Ledus.S1	AUGUSTUS	stop_codon	21911996	21911998	.	+	0	transcript_id "Ledus.S1G256100.t1"; gene_id "Ledus.S1G256100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2073.t1 is derived from g8936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14510967	14511419	.	-	.	Ledus.S2G195500
Ledus.S2	AUGUSTUS	transcript	14510967	14511419	.	-	.	transcript_id "Ledus.S2G195500.t1"; gene_id "Ledus.S2G195500"
Ledus.S2	AUGUSTUS	stop_codon	14510964	14510966	.	-	0	transcript_id "Ledus.S2G195500.t1"; gene_id "Ledus.S2G195500"
Ledus.S2	AUGUSTUS	CDS	14510967	14511419	0.71	-	0	transcript_id "Ledus.S2G195500.t1"; gene_id "Ledus.S2G195500"
Ledus.S2	AUGUSTUS	exon	14510967	14511419	.	-	.	transcript_id "Ledus.S2G195500.t1"; gene_id "Ledus.S2G195500"
Ledus.S2	AUGUSTUS	start_codon	14511417	14511419	.	-	0	transcript_id "Ledus.S2G195500.t1"; gene_id "Ledus.S2G195500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3729.t1 is derived from g1165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11205284	11209667	.	-	.	Ledus.S1G115000
Ledus.S1	AUGUSTUS	transcript	11205284	11209667	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	stop_codon	11205281	11205283	.	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11205284	11205583	1	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11205284	11205583	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11205584	11205677	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11205678	11205833	1	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11205678	11205833	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11205834	11205957	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11205958	11206017	1	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11205958	11206017	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11206018	11206191	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11206192	11206242	1	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11206192	11206242	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11206243	11206361	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11206362	11206433	1	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11206362	11206433	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11206434	11206516	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11206517	11206583	1	-	1	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11206517	11206583	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11206584	11206718	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11206719	11206801	1	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11206719	11206801	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11206802	11206880	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11206881	11206997	0.99	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11206881	11206997	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11206998	11207104	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11207105	11207146	0.98	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11207105	11207146	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11207147	11207316	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11207317	11207382	1	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11207317	11207382	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11207383	11207500	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11207501	11207629	0.88	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11207501	11207629	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11207630	11207735	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11207736	11207807	0.74	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11207736	11207807	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11207808	11207914	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11207915	11207961	1	-	2	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11207915	11207961	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11207962	11208035	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11208036	11208104	0.75	-	2	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11208036	11208104	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11208105	11208213	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11208214	11208285	0.67	-	2	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11208214	11208285	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11208286	11208400	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11208401	11208468	0.87	-	1	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11208401	11208468	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11208469	11208565	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11208566	11208731	0.87	-	2	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11208566	11208731	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11208732	11208829	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11208830	11208923	1	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11208830	11208923	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11208924	11209029	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11209030	11209104	1	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11209030	11209104	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11209105	11209184	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11209185	11209268	1	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11209185	11209268	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	intron	11209269	11209535	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	CDS	11209536	11209667	0.47	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	exon	11209536	11209667	.	-	.	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
Ledus.S1	AUGUSTUS	start_codon	11209665	11209667	.	-	0	transcript_id "Ledus.S1G115000.t1"; gene_id "Ledus.S1G115000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11743.t1 is derived from g5362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6533674	6535708	.	-	.	Ledus.S4G089900
Ledus.S4	AUGUSTUS	transcript	6533674	6535708	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	stop_codon	6533671	6533673	.	-	0	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	CDS	6533674	6533745	1	-	0	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	exon	6533674	6533745	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	intron	6533746	6533819	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	CDS	6533820	6533875	1	-	2	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	exon	6533820	6533875	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	intron	6533876	6533974	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	CDS	6533975	6534034	1	-	2	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	exon	6533975	6534034	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	intron	6534035	6534132	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	CDS	6534133	6534379	1	-	0	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	exon	6534133	6534379	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	intron	6534380	6534456	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	CDS	6534457	6534582	1	-	0	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	exon	6534457	6534582	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	intron	6534583	6534687	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	CDS	6534688	6534715	1	-	1	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	exon	6534688	6534715	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	intron	6534716	6534794	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	CDS	6534795	6534870	1	-	2	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	exon	6534795	6534870	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	intron	6534871	6534958	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	CDS	6534959	6535032	1	-	1	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	exon	6534959	6535032	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	intron	6535033	6535120	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	CDS	6535121	6535166	1	-	2	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	exon	6535121	6535166	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	intron	6535167	6535260	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	CDS	6535261	6535327	1	-	0	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	exon	6535261	6535327	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	intron	6535328	6535407	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	CDS	6535408	6535518	1	-	0	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	exon	6535408	6535518	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	intron	6535519	6535588	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	CDS	6535589	6535708	1	-	0	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	exon	6535589	6535708	.	-	.	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
Ledus.S4	AUGUSTUS	start_codon	6535706	6535708	.	-	0	transcript_id "Ledus.S4G089900.t1"; gene_id "Ledus.S4G089900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3660.t1 is derived from g1096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10533274	10536054	.	-	.	Ledus.S1G108100
Ledus.S1	AUGUSTUS	transcript	10533274	10536054	.	-	.	transcript_id "Ledus.S1G108100.t1"; gene_id "Ledus.S1G108100"
Ledus.S1	AUGUSTUS	stop_codon	10533271	10533273	.	-	0	transcript_id "Ledus.S1G108100.t1"; gene_id "Ledus.S1G108100"
Ledus.S1	AUGUSTUS	CDS	10533274	10533586	0.99	-	1	transcript_id "Ledus.S1G108100.t1"; gene_id "Ledus.S1G108100"
Ledus.S1	AUGUSTUS	exon	10533274	10533586	.	-	.	transcript_id "Ledus.S1G108100.t1"; gene_id "Ledus.S1G108100"
Ledus.S1	AUGUSTUS	intron	10533587	10533703	.	-	.	transcript_id "Ledus.S1G108100.t1"; gene_id "Ledus.S1G108100"
Ledus.S1	AUGUSTUS	CDS	10533704	10536054	0.98	-	0	transcript_id "Ledus.S1G108100.t1"; gene_id "Ledus.S1G108100"
Ledus.S1	AUGUSTUS	exon	10533704	10536054	.	-	.	transcript_id "Ledus.S1G108100.t1"; gene_id "Ledus.S1G108100"
Ledus.S1	AUGUSTUS	start_codon	10536052	10536054	.	-	0	transcript_id "Ledus.S1G108100.t1"; gene_id "Ledus.S1G108100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1913.t1 is derived from g8776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13373245	13375482	.	-	.	Ledus.S2G179500
Ledus.S2	AUGUSTUS	transcript	13373245	13375482	.	-	.	transcript_id "Ledus.S2G179500.t1"; gene_id "Ledus.S2G179500"
Ledus.S2	AUGUSTUS	stop_codon	13373242	13373244	.	-	0	transcript_id "Ledus.S2G179500.t1"; gene_id "Ledus.S2G179500"
Ledus.S2	AUGUSTUS	CDS	13373245	13375482	1	-	0	transcript_id "Ledus.S2G179500.t1"; gene_id "Ledus.S2G179500"
Ledus.S2	AUGUSTUS	exon	13373245	13375482	.	-	.	transcript_id "Ledus.S2G179500.t1"; gene_id "Ledus.S2G179500"
Ledus.S2	AUGUSTUS	start_codon	13375480	13375482	.	-	0	transcript_id "Ledus.S2G179500.t1"; gene_id "Ledus.S2G179500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11425.t1 is derived from g5043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4206649	4209578	.	+	.	Ledus.S4G058100
Ledus.S4	AUGUSTUS	transcript	4206649	4209578	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	start_codon	4206649	4206651	.	+	0	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	CDS	4206649	4206796	1	+	0	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	exon	4206649	4206796	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	intron	4206797	4206881	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	CDS	4206882	4206970	1	+	2	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	exon	4206882	4206970	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	intron	4206971	4207149	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	CDS	4207150	4207236	1	+	0	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	exon	4207150	4207236	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	intron	4207237	4207318	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	CDS	4207319	4207467	1	+	0	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	exon	4207319	4207467	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	intron	4207468	4207566	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	CDS	4207567	4207698	1	+	1	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	exon	4207567	4207698	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	intron	4207699	4207803	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	CDS	4207804	4207915	0.72	+	1	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	exon	4207804	4207915	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	intron	4207916	4208018	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	CDS	4208019	4208067	0.46	+	0	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	exon	4208019	4208067	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	intron	4208068	4208266	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	CDS	4208267	4208343	0.33	+	2	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	exon	4208267	4208343	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	intron	4208344	4208518	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	CDS	4208519	4208797	0.63	+	0	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	exon	4208519	4208797	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	intron	4208798	4208899	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	CDS	4208900	4209046	0.95	+	0	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	exon	4208900	4209046	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	intron	4209047	4209116	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	CDS	4209117	4209224	1	+	0	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	exon	4209117	4209224	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	intron	4209225	4209305	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	CDS	4209306	4209578	1	+	0	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	exon	4209306	4209578	.	+	.	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
Ledus.S4	AUGUSTUS	stop_codon	4209579	4209581	.	+	0	transcript_id "Ledus.S4G058100.t1"; gene_id "Ledus.S4G058100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5342.t1 is derived from g2781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23479086	23482630	.	+	.	Ledus.S1G276300
Ledus.S1	AUGUSTUS	transcript	23479086	23482630	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	start_codon	23479086	23479088	.	+	0	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23479086	23479151	0.89	+	0	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23479086	23479151	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23479152	23479289	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23479290	23479493	1	+	0	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23479290	23479493	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23479494	23479680	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23479681	23479929	1	+	0	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23479681	23479929	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23479930	23480012	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23480013	23480228	1	+	0	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23480013	23480228	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23480229	23480330	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23480331	23480486	1	+	0	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23480331	23480486	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23480487	23480596	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23480597	23480756	1	+	0	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23480597	23480756	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23480757	23480879	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23480880	23481031	1	+	2	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23480880	23481031	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23481032	23481176	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23481177	23481264	1	+	0	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23481177	23481264	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23481265	23481360	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23481361	23481434	1	+	2	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23481361	23481434	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23481435	23481537	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23481538	23481612	1	+	0	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23481538	23481612	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23481613	23481698	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23481699	23482038	1	+	0	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23481699	23482038	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23482039	23482328	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23482329	23482630	0.94	+	2	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23482329	23482630	.	+	.	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	stop_codon	23482631	23482633	.	+	0	transcript_id "Ledus.S1G276300.t1"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	transcript	23479086	23482630	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	start_codon	23479086	23479088	.	+	0	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23479086	23479151	0.78	+	0	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23479086	23479151	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23479152	23479289	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23479290	23479493	1	+	0	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23479290	23479493	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23479494	23479680	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23479681	23479929	1	+	0	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23479681	23479929	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23479930	23480012	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23480013	23480228	1	+	0	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23480013	23480228	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23480229	23480330	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23480331	23480486	1	+	0	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23480331	23480486	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23480487	23480596	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23480597	23480756	1	+	0	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23480597	23480756	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23480757	23480879	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23480880	23481031	1	+	2	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23480880	23481031	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23481032	23481176	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23481177	23481264	1	+	0	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23481177	23481264	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23481265	23481360	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23481361	23481434	1	+	2	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23481361	23481434	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23481435	23481537	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23481538	23481612	1	+	0	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23481538	23481612	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23481613	23481698	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23481699	23481986	0.41	+	0	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23481699	23481986	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23481987	23482093	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23482094	23482100	0.83	+	0	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23482094	23482100	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	intron	23482101	23482328	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	CDS	23482329	23482630	0.82	+	2	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	exon	23482329	23482630	.	+	.	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
Ledus.S1	AUGUSTUS	stop_codon	23482631	23482633	.	+	0	transcript_id "Ledus.S1G276300.t2"; gene_id "Ledus.S1G276300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10090.t1 is derived from g11120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12599027	12602664	.	+	.	Ledus.S3G156700
Ledus.S3	AUGUSTUS	transcript	12599027	12602664	.	+	.	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	start_codon	12599027	12599029	.	+	0	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	CDS	12599027	12599142	0.49	+	0	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	exon	12599027	12599142	.	+	.	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	intron	12599143	12599558	.	+	.	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	CDS	12599559	12599569	0.95	+	1	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	exon	12599559	12599569	.	+	.	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	intron	12599570	12599659	.	+	.	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	CDS	12599660	12601263	0.95	+	2	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	exon	12599660	12601263	.	+	.	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	intron	12601264	12601357	.	+	.	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	CDS	12601358	12602049	1	+	0	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	exon	12601358	12602049	.	+	.	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	intron	12602050	12602633	.	+	.	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	CDS	12602634	12602664	0.66	+	1	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	exon	12602634	12602664	.	+	.	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
Ledus.S3	AUGUSTUS	stop_codon	12602665	12602667	.	+	0	transcript_id "Ledus.S3G156700.t1"; gene_id "Ledus.S3G156700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10383.t1 is derived from g11413.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14619373	14620038	.	-	.	Ledus.S3G186000
Ledus.S3	AUGUSTUS	transcript	14619373	14620038	.	-	.	transcript_id "Ledus.S3G186000.t1"; gene_id "Ledus.S3G186000"
Ledus.S3	AUGUSTUS	stop_codon	14619370	14619372	.	-	0	transcript_id "Ledus.S3G186000.t1"; gene_id "Ledus.S3G186000"
Ledus.S3	AUGUSTUS	CDS	14619373	14619715	1	-	1	transcript_id "Ledus.S3G186000.t1"; gene_id "Ledus.S3G186000"
Ledus.S3	AUGUSTUS	exon	14619373	14619715	.	-	.	transcript_id "Ledus.S3G186000.t1"; gene_id "Ledus.S3G186000"
Ledus.S3	AUGUSTUS	intron	14619716	14619787	.	-	.	transcript_id "Ledus.S3G186000.t1"; gene_id "Ledus.S3G186000"
Ledus.S3	AUGUSTUS	CDS	14619788	14620038	0.99	-	0	transcript_id "Ledus.S3G186000.t1"; gene_id "Ledus.S3G186000"
Ledus.S3	AUGUSTUS	exon	14619788	14620038	.	-	.	transcript_id "Ledus.S3G186000.t1"; gene_id "Ledus.S3G186000"
Ledus.S3	AUGUSTUS	start_codon	14620036	14620038	.	-	0	transcript_id "Ledus.S3G186000.t1"; gene_id "Ledus.S3G186000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10087.t1 is derived from g11117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12567624	12568926	.	-	.	Ledus.S3G156400
Ledus.S3	AUGUSTUS	transcript	12567624	12568926	.	-	.	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	stop_codon	12567621	12567623	.	-	0	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	CDS	12567624	12567735	1	-	1	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	exon	12567624	12567735	.	-	.	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	intron	12567736	12567833	.	-	.	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	CDS	12567834	12567916	1	-	0	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	exon	12567834	12567916	.	-	.	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	intron	12567917	12568077	.	-	.	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	CDS	12568078	12568127	1	-	2	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	exon	12568078	12568127	.	-	.	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	intron	12568128	12568286	.	-	.	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	CDS	12568287	12568393	1	-	1	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	exon	12568287	12568393	.	-	.	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	intron	12568394	12568666	.	-	.	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	CDS	12568667	12568926	0.99	-	0	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	exon	12568667	12568926	.	-	.	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
Ledus.S3	AUGUSTUS	start_codon	12568924	12568926	.	-	0	transcript_id "Ledus.S3G156400.t1"; gene_id "Ledus.S3G156400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12419.t1 is derived from g6040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11941619	11948964	.	-	.	Ledus.S4G157500
Ledus.S4	AUGUSTUS	transcript	11941619	11948964	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	stop_codon	11941616	11941618	.	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11941619	11942159	0.88	-	1	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11941619	11942159	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11942160	11942251	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11942252	11942968	1	-	1	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11942252	11942968	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11942969	11943087	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11943088	11943170	1	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11943088	11943170	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11943171	11943344	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11943345	11943435	1	-	1	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11943345	11943435	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11943436	11943571	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11943572	11943651	1	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11943572	11943651	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11943652	11943740	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11943741	11944085	1	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11943741	11944085	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11944086	11944184	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11944185	11944292	1	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11944185	11944292	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11944293	11944378	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11944379	11944735	1	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11944379	11944735	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11944736	11944869	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11944870	11944936	0.63	-	1	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11944870	11944936	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11944937	11945037	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11945038	11945102	0.99	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11945038	11945102	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11945103	11945210	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11945211	11945278	0.9	-	2	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11945211	11945278	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11945279	11945399	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11945400	11945531	0.97	-	2	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11945400	11945531	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11945532	11945670	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11945671	11945989	1	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11945671	11945989	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11945990	11946136	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11946137	11946213	0.97	-	2	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11946137	11946213	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11946214	11946534	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11946535	11946718	0.63	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11946535	11946718	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11946719	11946842	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11946843	11946943	0.99	-	2	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11946843	11946943	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11946944	11947077	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11947078	11947127	1	-	1	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11947078	11947127	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11947128	11947378	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11947379	11947431	0.99	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11947379	11947431	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11947432	11947541	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11947542	11947664	0.98	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11947542	11947664	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11947665	11947785	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11947786	11947869	1	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11947786	11947869	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11947870	11948152	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11948153	11948218	1	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11948153	11948218	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	intron	11948219	11948688	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	CDS	11948689	11948964	0.39	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	exon	11948689	11948964	.	-	.	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
Ledus.S4	AUGUSTUS	start_codon	11948962	11948964	.	-	0	transcript_id "Ledus.S4G157500.t1"; gene_id "Ledus.S4G157500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6484.t1 is derived from g3927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31560531	31560944	.	-	.	Ledus.S1G390500
Ledus.S1	AUGUSTUS	transcript	31560531	31560944	.	-	.	transcript_id "Ledus.S1G390500.t1"; gene_id "Ledus.S1G390500"
Ledus.S1	AUGUSTUS	stop_codon	31560528	31560530	.	-	0	transcript_id "Ledus.S1G390500.t1"; gene_id "Ledus.S1G390500"
Ledus.S1	AUGUSTUS	CDS	31560531	31560944	0.99	-	0	transcript_id "Ledus.S1G390500.t1"; gene_id "Ledus.S1G390500"
Ledus.S1	AUGUSTUS	exon	31560531	31560944	.	-	.	transcript_id "Ledus.S1G390500.t1"; gene_id "Ledus.S1G390500"
Ledus.S1	AUGUSTUS	start_codon	31560942	31560944	.	-	0	transcript_id "Ledus.S1G390500.t1"; gene_id "Ledus.S1G390500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8043.t1 is derived from g12714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8765696	8769072	.	+	.	Ledus.S5G082100
Ledus.S5	AUGUSTUS	transcript	8765696	8769072	.	+	.	transcript_id "Ledus.S5G082100.t1"; gene_id "Ledus.S5G082100"
Ledus.S5	AUGUSTUS	start_codon	8765696	8765698	.	+	0	transcript_id "Ledus.S5G082100.t1"; gene_id "Ledus.S5G082100"
Ledus.S5	AUGUSTUS	CDS	8765696	8768627	0.89	+	0	transcript_id "Ledus.S5G082100.t1"; gene_id "Ledus.S5G082100"
Ledus.S5	AUGUSTUS	exon	8765696	8768627	.	+	.	transcript_id "Ledus.S5G082100.t1"; gene_id "Ledus.S5G082100"
Ledus.S5	AUGUSTUS	intron	8768628	8768947	.	+	.	transcript_id "Ledus.S5G082100.t1"; gene_id "Ledus.S5G082100"
Ledus.S5	AUGUSTUS	CDS	8768948	8769072	1	+	2	transcript_id "Ledus.S5G082100.t1"; gene_id "Ledus.S5G082100"
Ledus.S5	AUGUSTUS	exon	8768948	8769072	.	+	.	transcript_id "Ledus.S5G082100.t1"; gene_id "Ledus.S5G082100"
Ledus.S5	AUGUSTUS	stop_codon	8769073	8769075	.	+	0	transcript_id "Ledus.S5G082100.t1"; gene_id "Ledus.S5G082100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8698.t1 is derived from g9728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1447601	1448288	.	+	.	Ledus.S3G017500
Ledus.S3	AUGUSTUS	transcript	1447601	1448288	.	+	.	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	start_codon	1447601	1447603	.	+	0	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	CDS	1447601	1447665	0.81	+	0	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	exon	1447601	1447665	.	+	.	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	intron	1447666	1447764	.	+	.	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	CDS	1447765	1447811	0.82	+	1	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	exon	1447765	1447811	.	+	.	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	intron	1447812	1447893	.	+	.	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	CDS	1447894	1447996	0.82	+	2	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	exon	1447894	1447996	.	+	.	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	intron	1447997	1448095	.	+	.	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	CDS	1448096	1448288	0.94	+	1	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	exon	1448096	1448288	.	+	.	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
Ledus.S3	AUGUSTUS	stop_codon	1448289	1448291	.	+	0	transcript_id "Ledus.S3G017500.t1"; gene_id "Ledus.S3G017500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9053.t1 is derived from g10083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4230274	4230893	.	+	.	Ledus.S3G053000
Ledus.S3	AUGUSTUS	transcript	4230274	4230893	.	+	.	transcript_id "Ledus.S3G053000.t1"; gene_id "Ledus.S3G053000"
Ledus.S3	AUGUSTUS	start_codon	4230274	4230276	.	+	0	transcript_id "Ledus.S3G053000.t1"; gene_id "Ledus.S3G053000"
Ledus.S3	AUGUSTUS	CDS	4230274	4230409	0.5	+	0	transcript_id "Ledus.S3G053000.t1"; gene_id "Ledus.S3G053000"
Ledus.S3	AUGUSTUS	exon	4230274	4230409	.	+	.	transcript_id "Ledus.S3G053000.t1"; gene_id "Ledus.S3G053000"
Ledus.S3	AUGUSTUS	intron	4230410	4230492	.	+	.	transcript_id "Ledus.S3G053000.t1"; gene_id "Ledus.S3G053000"
Ledus.S3	AUGUSTUS	CDS	4230493	4230893	0.15	+	2	transcript_id "Ledus.S3G053000.t1"; gene_id "Ledus.S3G053000"
Ledus.S3	AUGUSTUS	exon	4230493	4230893	.	+	.	transcript_id "Ledus.S3G053000.t1"; gene_id "Ledus.S3G053000"
Ledus.S3	AUGUSTUS	stop_codon	4230894	4230896	.	+	0	transcript_id "Ledus.S3G053000.t1"; gene_id "Ledus.S3G053000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2086.t1 is derived from g8949.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14660669	14669986	.	-	.	Ledus.S2G196800
Ledus.S2	AUGUSTUS	transcript	14660669	14669986	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	stop_codon	14660666	14660668	.	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14660669	14660737	1	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14660669	14660737	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14660738	14660833	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14660834	14660903	1	-	1	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14660834	14660903	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14660904	14660981	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14660982	14661077	1	-	1	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14660982	14661077	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14661078	14661169	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14661170	14661435	0.9	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14661170	14661435	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14661436	14661554	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14661555	14661671	0.99	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14661555	14661671	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14661672	14661791	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14661792	14661868	1	-	2	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14661792	14661868	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14661869	14661977	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14661978	14662145	0.97	-	2	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14661978	14662145	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14662146	14662229	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14662230	14662281	1	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14662230	14662281	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14662282	14662399	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14662400	14662469	0.92	-	1	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14662400	14662469	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14662470	14662601	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14662602	14662712	1	-	1	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14662602	14662712	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14662713	14662855	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14662856	14662998	1	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14662856	14662998	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14662999	14663105	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14663106	14663207	1	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14663106	14663207	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14663208	14663364	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14663365	14663471	1	-	2	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14663365	14663471	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14663472	14663606	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14663607	14663694	0.99	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14663607	14663694	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14663695	14663818	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14663819	14663875	0.88	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14663819	14663875	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14663876	14663961	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14663962	14664059	1	-	2	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14663962	14664059	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14664060	14664204	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14664205	14664283	1	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14664205	14664283	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14664284	14664479	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14664480	14664561	1	-	1	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14664480	14664561	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14664562	14664660	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14664661	14664999	0.66	-	1	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14664661	14664999	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14665000	14665315	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14665316	14665407	0.67	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14665316	14665407	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14665408	14665550	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14665551	14665748	0.86	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14665551	14665748	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14665749	14665850	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14665851	14666084	0.96	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14665851	14666084	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14666085	14666172	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14666173	14666213	1	-	2	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14666173	14666213	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14666214	14666323	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14666324	14666447	0.99	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14666324	14666447	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14666448	14666540	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14666541	14666738	1	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14666541	14666738	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14666739	14666829	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14666830	14667104	1	-	2	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14666830	14667104	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14667105	14667187	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14667188	14667273	1	-	1	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14667188	14667273	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14667274	14667700	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14667701	14667795	1	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14667701	14667795	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14667796	14667903	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14667904	14668101	1	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14667904	14668101	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14668102	14668239	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14668240	14668470	1	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14668240	14668470	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14668471	14668576	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14668577	14668617	1	-	2	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14668577	14668617	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14668618	14668707	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14668708	14668813	1	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14668708	14668813	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14668814	14668895	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14668896	14669096	1	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14668896	14669096	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14669097	14669177	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14669178	14669449	1	-	2	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14669178	14669449	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14669450	14669536	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14669537	14669568	1	-	1	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14669537	14669568	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	intron	14669569	14669648	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	CDS	14669649	14669986	1	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	exon	14669649	14669986	.	-	.	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
Ledus.S2	AUGUSTUS	start_codon	14669984	14669986	.	-	0	transcript_id "Ledus.S2G196800.t1"; gene_id "Ledus.S2G196800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8991.t1 is derived from g10021.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3724460	3733603	.	-	.	Ledus.S3G046800
Ledus.S3	AUGUSTUS	transcript	3724460	3733603	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	stop_codon	3724457	3724459	.	-	0	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3724460	3724573	0.32	-	0	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3724460	3724573	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3724574	3724864	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3724865	3728002	0.82	-	0	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3724865	3728002	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3728003	3728151	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3728152	3728931	0.93	-	0	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3728152	3728931	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3728932	3729063	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3729064	3729183	1	-	0	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3729064	3729183	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3729184	3729307	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3729308	3729530	0.95	-	1	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3729308	3729530	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3729531	3729664	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3729665	3730598	0.83	-	2	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3729665	3730598	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3730599	3730682	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3730683	3731268	0.98	-	0	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3730683	3731268	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3731269	3731438	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3731439	3731540	1	-	0	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3731439	3731540	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3731541	3731709	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3731710	3731976	0.96	-	0	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3731710	3731976	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3731977	3732088	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3732089	3732209	0.91	-	1	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3732089	3732209	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3732210	3732408	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3732409	3732504	1	-	1	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3732409	3732504	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3732505	3732610	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3732611	3732668	0.98	-	2	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3732611	3732668	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3732669	3732785	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3732786	3732858	0.82	-	0	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3732786	3732858	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3732859	3733117	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3733118	3733163	1	-	1	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3733118	3733163	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3733164	3733238	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3733239	3733357	0.97	-	0	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3733239	3733357	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	intron	3733358	3733447	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	CDS	3733448	3733603	0.37	-	0	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	exon	3733448	3733603	.	-	.	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
Ledus.S3	AUGUSTUS	start_codon	3733601	3733603	.	-	0	transcript_id "Ledus.S3G046800.t1"; gene_id "Ledus.S3G046800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8920.t1 is derived from g9950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3158534	3159221	.	-	.	Ledus.S3G039700
Ledus.S3	AUGUSTUS	transcript	3158534	3159221	.	-	.	transcript_id "Ledus.S3G039700.t1"; gene_id "Ledus.S3G039700"
Ledus.S3	AUGUSTUS	stop_codon	3158531	3158533	.	-	0	transcript_id "Ledus.S3G039700.t1"; gene_id "Ledus.S3G039700"
Ledus.S3	AUGUSTUS	CDS	3158534	3158791	0.82	-	0	transcript_id "Ledus.S3G039700.t1"; gene_id "Ledus.S3G039700"
Ledus.S3	AUGUSTUS	exon	3158534	3158791	.	-	.	transcript_id "Ledus.S3G039700.t1"; gene_id "Ledus.S3G039700"
Ledus.S3	AUGUSTUS	intron	3158792	3158972	.	-	.	transcript_id "Ledus.S3G039700.t1"; gene_id "Ledus.S3G039700"
Ledus.S3	AUGUSTUS	CDS	3158973	3159221	0.26	-	0	transcript_id "Ledus.S3G039700.t1"; gene_id "Ledus.S3G039700"
Ledus.S3	AUGUSTUS	exon	3158973	3159221	.	-	.	transcript_id "Ledus.S3G039700.t1"; gene_id "Ledus.S3G039700"
Ledus.S3	AUGUSTUS	start_codon	3159219	3159221	.	-	0	transcript_id "Ledus.S3G039700.t1"; gene_id "Ledus.S3G039700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11251.t1 is derived from g4869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2954963	2959658	.	-	.	Ledus.S4G040700
Ledus.S4	AUGUSTUS	transcript	2954963	2959658	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	stop_codon	2954960	2954962	.	-	0	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	CDS	2954963	2955191	0.84	-	1	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	exon	2954963	2955191	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	intron	2955192	2955293	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	CDS	2955294	2955382	1	-	0	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	exon	2955294	2955382	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	intron	2955383	2955471	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	CDS	2955472	2955531	1	-	0	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	exon	2955472	2955531	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	intron	2955532	2955618	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	CDS	2955619	2956033	0.96	-	1	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	exon	2955619	2956033	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	intron	2956034	2956109	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	CDS	2956110	2956186	1	-	0	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	exon	2956110	2956186	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	intron	2956187	2956279	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	CDS	2956280	2956534	0.94	-	0	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	exon	2956280	2956534	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	intron	2956535	2956636	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	CDS	2956637	2956851	0.99	-	2	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	exon	2956637	2956851	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	intron	2956852	2957029	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	CDS	2957030	2957135	1	-	0	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	exon	2957030	2957135	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	intron	2957136	2957388	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	CDS	2957389	2957446	1	-	1	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	exon	2957389	2957446	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	intron	2957447	2958763	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	CDS	2958764	2958941	0.55	-	2	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	exon	2958764	2958941	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	intron	2958942	2959002	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	CDS	2959003	2959055	0.62	-	1	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	exon	2959003	2959055	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	intron	2959056	2959647	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	CDS	2959648	2959658	0.83	-	0	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	exon	2959648	2959658	.	-	.	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
Ledus.S4	AUGUSTUS	start_codon	2959656	2959658	.	-	0	transcript_id "Ledus.S4G040700.t1"; gene_id "Ledus.S4G040700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2188.t1 is derived from g9051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15827871	15830096	.	-	.	Ledus.S2G207000
Ledus.S2	AUGUSTUS	transcript	15827871	15830096	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	stop_codon	15827868	15827870	.	-	0	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	CDS	15827871	15827983	1	-	2	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	exon	15827871	15827983	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	intron	15827984	15828161	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	CDS	15828162	15828309	1	-	0	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	exon	15828162	15828309	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	intron	15828310	15828403	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	CDS	15828404	15828455	0.82	-	1	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	exon	15828404	15828455	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	intron	15828456	15828520	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	CDS	15828521	15828564	0.93	-	0	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	exon	15828521	15828564	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	intron	15828565	15828703	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	CDS	15828704	15828754	1	-	0	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	exon	15828704	15828754	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	intron	15828755	15828840	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	CDS	15828841	15828911	1	-	2	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	exon	15828841	15828911	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	intron	15828912	15829006	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	CDS	15829007	15829223	1	-	0	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	exon	15829007	15829223	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	intron	15829224	15829353	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	CDS	15829354	15829408	1	-	1	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	exon	15829354	15829408	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	intron	15829409	15829554	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	CDS	15829555	15829737	1	-	1	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	exon	15829555	15829737	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	intron	15829738	15829995	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	CDS	15829996	15830096	1	-	0	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	exon	15829996	15830096	.	-	.	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
Ledus.S2	AUGUSTUS	start_codon	15830094	15830096	.	-	0	transcript_id "Ledus.S2G207000.t1"; gene_id "Ledus.S2G207000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12011.t1 is derived from g5630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8666162	8668207	.	+	.	Ledus.S4G116700
Ledus.S4	AUGUSTUS	transcript	8666162	8668207	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	start_codon	8666162	8666164	.	+	0	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	CDS	8666162	8666329	0.98	+	0	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	exon	8666162	8666329	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	intron	8666330	8666416	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	CDS	8666417	8666497	1	+	0	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	exon	8666417	8666497	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	intron	8666498	8666724	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	CDS	8666725	8666808	1	+	0	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	exon	8666725	8666808	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	intron	8666809	8666886	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	CDS	8666887	8666979	1	+	0	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	exon	8666887	8666979	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	intron	8666980	8667166	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	CDS	8667167	8667311	1	+	0	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	exon	8667167	8667311	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	intron	8667312	8667393	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	CDS	8667394	8667504	1	+	2	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	exon	8667394	8667504	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	intron	8667505	8667709	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	CDS	8667710	8667792	1	+	2	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	exon	8667710	8667792	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	intron	8667793	8667946	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	CDS	8667947	8668004	1	+	0	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	exon	8667947	8668004	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	intron	8668005	8668130	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	CDS	8668131	8668207	0.99	+	2	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	exon	8668131	8668207	.	+	.	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
Ledus.S4	AUGUSTUS	stop_codon	8668208	8668210	.	+	0	transcript_id "Ledus.S4G116700.t1"; gene_id "Ledus.S4G116700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10831.t1 is derived from g11863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18098034	18101747	.	+	.	Ledus.S3G230800
Ledus.S3	AUGUSTUS	transcript	18098034	18101747	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	start_codon	18098034	18098036	.	+	0	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	CDS	18098034	18098225	0.94	+	0	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	exon	18098034	18098225	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	intron	18098226	18098316	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	CDS	18098317	18100112	0.99	+	0	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	exon	18098317	18100112	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	intron	18100113	18100216	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	CDS	18100217	18100225	0.99	+	1	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	exon	18100217	18100225	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	intron	18100226	18100411	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	CDS	18100412	18100512	0.47	+	1	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	exon	18100412	18100512	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	intron	18100513	18100843	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	CDS	18100844	18100895	0.75	+	2	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	exon	18100844	18100895	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	intron	18100896	18101035	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	CDS	18101036	18101226	1	+	1	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	exon	18101036	18101226	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	intron	18101227	18101310	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	CDS	18101311	18101370	1	+	2	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	exon	18101311	18101370	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	intron	18101371	18101475	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	CDS	18101476	18101747	1	+	2	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	exon	18101476	18101747	.	+	.	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
Ledus.S3	AUGUSTUS	stop_codon	18101748	18101750	.	+	0	transcript_id "Ledus.S3G230800.t1"; gene_id "Ledus.S3G230800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11383.t1 is derived from g5001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3922731	3923342	.	-	.	Ledus.S4G053900
Ledus.S4	AUGUSTUS	transcript	3922731	3923342	.	-	.	transcript_id "Ledus.S4G053900.t1"; gene_id "Ledus.S4G053900"
Ledus.S4	AUGUSTUS	stop_codon	3922728	3922730	.	-	0	transcript_id "Ledus.S4G053900.t1"; gene_id "Ledus.S4G053900"
Ledus.S4	AUGUSTUS	CDS	3922731	3923342	0.32	-	0	transcript_id "Ledus.S4G053900.t1"; gene_id "Ledus.S4G053900"
Ledus.S4	AUGUSTUS	exon	3922731	3923342	.	-	.	transcript_id "Ledus.S4G053900.t1"; gene_id "Ledus.S4G053900"
Ledus.S4	AUGUSTUS	start_codon	3923340	3923342	.	-	0	transcript_id "Ledus.S4G053900.t1"; gene_id "Ledus.S4G053900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8130.t1 is derived from g12801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9289677	9299111	.	-	.	Ledus.S5G090800
Ledus.S5	AUGUSTUS	transcript	9289677	9299111	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	stop_codon	9289674	9289676	.	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9289677	9289700	0.69	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9289677	9289700	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9289701	9289778	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9289779	9289819	0.69	-	2	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9289779	9289819	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9289820	9289945	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9289946	9290006	0.92	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9289946	9290006	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9290007	9290100	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9290101	9290247	1	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9290101	9290247	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9290248	9290336	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9290337	9290645	1	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9290337	9290645	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9290646	9290730	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9290731	9290832	1	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9290731	9290832	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9290833	9290930	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9290931	9291102	0.66	-	1	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9290931	9291102	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9291103	9291257	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9291258	9291654	0.63	-	2	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9291258	9291654	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9291655	9291765	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9291766	9291886	1	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9291766	9291886	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9291887	9292018	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9292019	9292125	0.8	-	2	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9292019	9292125	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9292126	9292264	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9292265	9292325	1	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9292265	9292325	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9292326	9292497	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9292498	9292641	1	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9292498	9292641	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9292642	9292742	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9292743	9292910	0.94	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9292743	9292910	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9292911	9293080	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9293081	9293182	0.82	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9293081	9293182	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9293183	9293643	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9293644	9297347	0.34	-	2	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9293644	9297347	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	intron	9297348	9297535	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	CDS	9297536	9299111	0.93	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	exon	9297536	9299111	.	-	.	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
Ledus.S5	AUGUSTUS	start_codon	9299109	9299111	.	-	0	transcript_id "Ledus.S5G090800.t1"; gene_id "Ledus.S5G090800"
# This transcript jg3849.t2 is derived from g1285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3850.t1 is derived from g1286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13165123	13166976	.	+	.	Ledus.S1G127100
Ledus.S1	AUGUSTUS	transcript	13165123	13166976	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	start_codon	13165123	13165125	.	+	0	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	CDS	13165123	13165625	0.64	+	0	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	exon	13165123	13165625	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	intron	13165626	13165763	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	CDS	13165764	13165818	1	+	1	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	exon	13165764	13165818	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	intron	13165819	13166005	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	CDS	13166006	13166080	1	+	0	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	exon	13166006	13166080	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	intron	13166081	13166263	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	CDS	13166264	13166355	0.96	+	0	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	exon	13166264	13166355	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	intron	13166356	13166460	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	CDS	13166461	13166542	1	+	1	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	exon	13166461	13166542	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	intron	13166543	13166680	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	CDS	13166681	13166764	1	+	0	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	exon	13166681	13166764	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	intron	13166765	13166853	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	CDS	13166854	13166976	1	+	0	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	exon	13166854	13166976	.	+	.	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
Ledus.S1	AUGUSTUS	stop_codon	13166977	13166979	.	+	0	transcript_id "Ledus.S1G127100.t1"; gene_id "Ledus.S1G127100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11628.t1 is derived from g5246.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5633490	5634660	.	+	.	Ledus.S4G078400
Ledus.S4	AUGUSTUS	transcript	5633490	5634660	.	+	.	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	start_codon	5633490	5633492	.	+	0	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	CDS	5633490	5633615	0.82	+	0	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	exon	5633490	5633615	.	+	.	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	intron	5633616	5633821	.	+	.	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	CDS	5633822	5633831	0.99	+	0	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	exon	5633822	5633831	.	+	.	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	intron	5633832	5634039	.	+	.	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	CDS	5634040	5634296	0.88	+	2	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	exon	5634040	5634296	.	+	.	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	intron	5634297	5634390	.	+	.	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	CDS	5634391	5634532	0.58	+	0	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	exon	5634391	5634532	.	+	.	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	intron	5634533	5634631	.	+	.	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	CDS	5634632	5634660	0.68	+	2	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	exon	5634632	5634660	.	+	.	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
Ledus.S4	AUGUSTUS	stop_codon	5634661	5634663	.	+	0	transcript_id "Ledus.S4G078400.t1"; gene_id "Ledus.S4G078400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7622.t1 is derived from g12293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4416396	4417347	.	+	.	Ledus.S5G040000
Ledus.S5	AUGUSTUS	transcript	4416396	4417347	.	+	.	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	start_codon	4416396	4416398	.	+	0	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	CDS	4416396	4416515	0.26	+	0	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	exon	4416396	4416515	.	+	.	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	intron	4416516	4416626	.	+	.	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	CDS	4416627	4416653	0.33	+	0	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	exon	4416627	4416653	.	+	.	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	intron	4416654	4416745	.	+	.	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	CDS	4416746	4416759	0.26	+	0	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	exon	4416746	4416759	.	+	.	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	intron	4416760	4416847	.	+	.	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	CDS	4416848	4417084	0.17	+	1	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	exon	4416848	4417084	.	+	.	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	intron	4417085	4417259	.	+	.	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	CDS	4417260	4417347	0.8	+	1	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	exon	4417260	4417347	.	+	.	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
Ledus.S5	AUGUSTUS	stop_codon	4417348	4417350	.	+	0	transcript_id "Ledus.S5G040000.t1"; gene_id "Ledus.S5G040000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg2683.t1 is derived from g116.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1771631	1777559	.	-	.	Ledus.S1G010400
Ledus.S1	AUGUSTUS	transcript	1771631	1777559	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	stop_codon	1771628	1771630	.	-	0	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1771631	1771716	0.89	-	2	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1771631	1771716	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1771717	1772171	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1772172	1772317	0.98	-	1	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1772172	1772317	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1772318	1772608	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1772609	1772653	1	-	1	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1772609	1772653	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1772654	1772840	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1772841	1772928	0.95	-	2	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1772841	1772928	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1772929	1773078	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1773079	1773099	0.95	-	2	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1773079	1773099	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1773100	1773319	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1773320	1773348	0.91	-	1	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1773320	1773348	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1773349	1773506	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1773507	1773697	1	-	0	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1773507	1773697	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1773698	1773828	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1773829	1774749	1	-	0	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1773829	1774749	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1774750	1774912	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1774913	1774988	1	-	1	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1774913	1774988	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1774989	1775294	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1775295	1775417	1	-	1	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1775295	1775417	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1775418	1775523	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1775524	1775688	0.99	-	1	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1775524	1775688	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1775689	1775800	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1775801	1775891	1	-	2	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1775801	1775891	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1775892	1775983	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1775984	1776068	1	-	0	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1775984	1776068	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1776069	1776199	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1776200	1776355	1	-	0	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1776200	1776355	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1776356	1776526	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1776527	1776583	1	-	0	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1776527	1776583	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1776584	1776682	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1776683	1776787	1	-	0	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1776683	1776787	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1776788	1777066	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1777067	1777179	1	-	2	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1777067	1777179	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1777180	1777516	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1777517	1777559	1	-	0	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1777517	1777559	.	-	.	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	start_codon	1777557	1777559	.	-	0	transcript_id "Ledus.S1G010400.t1"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	transcript	1771631	1777559	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	stop_codon	1771628	1771630	.	-	0	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1771631	1771716	0.85	-	2	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1771631	1771716	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1771717	1772171	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1772172	1772317	0.99	-	1	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1772172	1772317	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1772318	1772608	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1772609	1772653	1	-	1	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1772609	1772653	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1772654	1772840	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1772841	1772928	0.92	-	2	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1772841	1772928	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1772929	1773078	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1773079	1773099	0.92	-	2	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1773079	1773099	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1773100	1773319	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1773320	1773348	0.84	-	1	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1773320	1773348	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1773349	1773506	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1773507	1773697	1	-	0	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1773507	1773697	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1773698	1773828	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1773829	1774749	1	-	0	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1773829	1774749	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1774750	1774912	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1774913	1774988	1	-	1	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1774913	1774988	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1774989	1775294	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1775295	1775417	0.99	-	1	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1775295	1775417	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1775418	1775523	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1775524	1775688	0.99	-	1	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1775524	1775688	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1775689	1775800	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1775801	1775891	1	-	2	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1775801	1775891	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1775892	1775983	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1775984	1776068	1	-	0	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1775984	1776068	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1776069	1776199	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1776200	1776349	1	-	0	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1776200	1776349	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1776350	1776526	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1776527	1776583	1	-	0	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1776527	1776583	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1776584	1776682	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1776683	1776787	1	-	0	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1776683	1776787	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1776788	1777066	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1777067	1777179	1	-	2	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1777067	1777179	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1777180	1777516	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1777517	1777559	0.97	-	0	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1777517	1777559	.	-	.	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	start_codon	1777557	1777559	.	-	0	transcript_id "Ledus.S1G010400.t2"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	transcript	1771631	1777559	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	stop_codon	1771628	1771630	.	-	0	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1771631	1771716	0.82	-	2	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1771631	1771716	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1771717	1772171	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1772172	1772317	0.96	-	1	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1772172	1772317	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1772318	1772608	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1772609	1772653	1	-	1	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1772609	1772653	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1772654	1772840	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1772841	1772881	0.98	-	0	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1772841	1772881	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1772882	1773078	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1773079	1773135	0.9	-	0	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1773079	1773135	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1773136	1773299	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1773300	1773348	0.86	-	1	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1773300	1773348	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1773349	1773506	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1773507	1773697	1	-	0	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1773507	1773697	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1773698	1773828	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1773829	1774749	1	-	0	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1773829	1774749	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1774750	1774912	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1774913	1774988	1	-	1	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1774913	1774988	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1774989	1775294	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1775295	1775417	0.98	-	1	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1775295	1775417	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1775418	1775523	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1775524	1775688	0.97	-	1	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1775524	1775688	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1775689	1775800	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1775801	1775891	1	-	2	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1775801	1775891	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1775892	1775983	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1775984	1776068	1	-	0	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1775984	1776068	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1776069	1776199	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1776200	1776355	1	-	0	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1776200	1776355	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1776356	1776526	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1776527	1776583	1	-	0	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1776527	1776583	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1776584	1776682	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1776683	1776787	1	-	0	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1776683	1776787	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1776788	1777066	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1777067	1777179	1	-	2	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1777067	1777179	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	intron	1777180	1777516	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	CDS	1777517	1777559	0.99	-	0	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	exon	1777517	1777559	.	-	.	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
Ledus.S1	AUGUSTUS	start_codon	1777557	1777559	.	-	0	transcript_id "Ledus.S1G010400.t3"; gene_id "Ledus.S1G010400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3847.t1 is derived from g1283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13159456	13159972	.	+	.	Ledus.S1G126800
Ledus.S1	AUGUSTUS	transcript	13159456	13159972	.	+	.	transcript_id "Ledus.S1G126800.t1"; gene_id "Ledus.S1G126800"
Ledus.S1	AUGUSTUS	start_codon	13159456	13159458	.	+	0	transcript_id "Ledus.S1G126800.t1"; gene_id "Ledus.S1G126800"
Ledus.S1	AUGUSTUS	CDS	13159456	13159765	0.85	+	0	transcript_id "Ledus.S1G126800.t1"; gene_id "Ledus.S1G126800"
Ledus.S1	AUGUSTUS	exon	13159456	13159765	.	+	.	transcript_id "Ledus.S1G126800.t1"; gene_id "Ledus.S1G126800"
Ledus.S1	AUGUSTUS	intron	13159766	13159835	.	+	.	transcript_id "Ledus.S1G126800.t1"; gene_id "Ledus.S1G126800"
Ledus.S1	AUGUSTUS	CDS	13159836	13159972	0.9	+	2	transcript_id "Ledus.S1G126800.t1"; gene_id "Ledus.S1G126800"
Ledus.S1	AUGUSTUS	exon	13159836	13159972	.	+	.	transcript_id "Ledus.S1G126800.t1"; gene_id "Ledus.S1G126800"
Ledus.S1	AUGUSTUS	stop_codon	13159973	13159975	.	+	0	transcript_id "Ledus.S1G126800.t1"; gene_id "Ledus.S1G126800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5728.t1 is derived from g3167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26276047	26279709	.	-	.	Ledus.S1G314900
Ledus.S1	AUGUSTUS	transcript	26276047	26279709	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	stop_codon	26276044	26276046	.	-	0	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	CDS	26276047	26276311	0.99	-	1	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	exon	26276047	26276311	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	intron	26276312	26276396	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	CDS	26276397	26277747	0.98	-	2	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	exon	26276397	26277747	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	intron	26277748	26277830	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	CDS	26277831	26278207	1	-	1	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	exon	26277831	26278207	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	intron	26278208	26278302	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	CDS	26278303	26278405	0.53	-	2	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	exon	26278303	26278405	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	intron	26278406	26278523	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	CDS	26278524	26278680	0.99	-	0	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	exon	26278524	26278680	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	intron	26278681	26278764	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	CDS	26278765	26278887	1	-	0	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	exon	26278765	26278887	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	intron	26278888	26278965	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	CDS	26278966	26279072	0.93	-	2	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	exon	26278966	26279072	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	intron	26279073	26279392	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	CDS	26279393	26279496	0.61	-	1	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	exon	26279393	26279496	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	intron	26279497	26279581	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	CDS	26279582	26279709	0.91	-	0	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	exon	26279582	26279709	.	-	.	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
Ledus.S1	AUGUSTUS	start_codon	26279707	26279709	.	-	0	transcript_id "Ledus.S1G314900.t1"; gene_id "Ledus.S1G314900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2448.t1 is derived from g9311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18165506	18165878	.	+	.	Ledus.S2G233000
Ledus.S2	AUGUSTUS	transcript	18165506	18165878	.	+	.	transcript_id "Ledus.S2G233000.t1"; gene_id "Ledus.S2G233000"
Ledus.S2	AUGUSTUS	start_codon	18165506	18165508	.	+	0	transcript_id "Ledus.S2G233000.t1"; gene_id "Ledus.S2G233000"
Ledus.S2	AUGUSTUS	CDS	18165506	18165575	0.73	+	0	transcript_id "Ledus.S2G233000.t1"; gene_id "Ledus.S2G233000"
Ledus.S2	AUGUSTUS	exon	18165506	18165575	.	+	.	transcript_id "Ledus.S2G233000.t1"; gene_id "Ledus.S2G233000"
Ledus.S2	AUGUSTUS	intron	18165576	18165663	.	+	.	transcript_id "Ledus.S2G233000.t1"; gene_id "Ledus.S2G233000"
Ledus.S2	AUGUSTUS	CDS	18165664	18165878	0.53	+	2	transcript_id "Ledus.S2G233000.t1"; gene_id "Ledus.S2G233000"
Ledus.S2	AUGUSTUS	exon	18165664	18165878	.	+	.	transcript_id "Ledus.S2G233000.t1"; gene_id "Ledus.S2G233000"
Ledus.S2	AUGUSTUS	stop_codon	18165879	18165881	.	+	0	transcript_id "Ledus.S2G233000.t1"; gene_id "Ledus.S2G233000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6491.t1 is derived from g3934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31606085	31606387	.	+	.	Ledus.S1G391200
Ledus.S1	AUGUSTUS	transcript	31606085	31606387	.	+	.	transcript_id "Ledus.S1G391200.t1"; gene_id "Ledus.S1G391200"
Ledus.S1	AUGUSTUS	start_codon	31606085	31606087	.	+	0	transcript_id "Ledus.S1G391200.t1"; gene_id "Ledus.S1G391200"
Ledus.S1	AUGUSTUS	CDS	31606085	31606387	0.31	+	0	transcript_id "Ledus.S1G391200.t1"; gene_id "Ledus.S1G391200"
Ledus.S1	AUGUSTUS	exon	31606085	31606387	.	+	.	transcript_id "Ledus.S1G391200.t1"; gene_id "Ledus.S1G391200"
Ledus.S1	AUGUSTUS	stop_codon	31606388	31606390	.	+	0	transcript_id "Ledus.S1G391200.t1"; gene_id "Ledus.S1G391200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1576.t1 is derived from g8437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11048938	11051580	.	+	.	Ledus.S2G145800
Ledus.S2	AUGUSTUS	transcript	11048938	11051580	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	start_codon	11048938	11048940	.	+	0	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	CDS	11048938	11049063	0.43	+	0	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	exon	11048938	11049063	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	intron	11049064	11049186	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	CDS	11049187	11049304	0.73	+	0	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	exon	11049187	11049304	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	intron	11049305	11049442	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	CDS	11049443	11049530	1	+	2	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	exon	11049443	11049530	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	intron	11049531	11049679	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	CDS	11049680	11049844	1	+	1	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	exon	11049680	11049844	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	intron	11049845	11050022	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	CDS	11050023	11050154	0.98	+	1	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	exon	11050023	11050154	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	intron	11050155	11050259	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	CDS	11050260	11050410	0.99	+	1	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	exon	11050260	11050410	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	intron	11050411	11050595	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	CDS	11050596	11050634	1	+	0	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	exon	11050596	11050634	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	intron	11050635	11050754	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	CDS	11050755	11050829	1	+	0	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	exon	11050755	11050829	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	intron	11050830	11051024	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	CDS	11051025	11051084	1	+	0	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	exon	11051025	11051084	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	intron	11051085	11051177	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	CDS	11051178	11051242	1	+	0	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	exon	11051178	11051242	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	intron	11051243	11051344	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	CDS	11051345	11051435	1	+	1	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	exon	11051345	11051435	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	intron	11051436	11051535	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	CDS	11051536	11051580	1	+	0	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	exon	11051536	11051580	.	+	.	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
Ledus.S2	AUGUSTUS	stop_codon	11051581	11051583	.	+	0	transcript_id "Ledus.S2G145800.t1"; gene_id "Ledus.S2G145800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12364.t1 is derived from g5985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11446489	11447014	.	+	.	Ledus.S4G152000
Ledus.S4	AUGUSTUS	transcript	11446489	11447014	.	+	.	transcript_id "Ledus.S4G152000.t1"; gene_id "Ledus.S4G152000"
Ledus.S4	AUGUSTUS	start_codon	11446489	11446491	.	+	0	transcript_id "Ledus.S4G152000.t1"; gene_id "Ledus.S4G152000"
Ledus.S4	AUGUSTUS	CDS	11446489	11446634	0.55	+	0	transcript_id "Ledus.S4G152000.t1"; gene_id "Ledus.S4G152000"
Ledus.S4	AUGUSTUS	exon	11446489	11446634	.	+	.	transcript_id "Ledus.S4G152000.t1"; gene_id "Ledus.S4G152000"
Ledus.S4	AUGUSTUS	intron	11446635	11446734	.	+	.	transcript_id "Ledus.S4G152000.t1"; gene_id "Ledus.S4G152000"
Ledus.S4	AUGUSTUS	CDS	11446735	11447014	0.61	+	1	transcript_id "Ledus.S4G152000.t1"; gene_id "Ledus.S4G152000"
Ledus.S4	AUGUSTUS	exon	11446735	11447014	.	+	.	transcript_id "Ledus.S4G152000.t1"; gene_id "Ledus.S4G152000"
Ledus.S4	AUGUSTUS	stop_codon	11447015	11447017	.	+	0	transcript_id "Ledus.S4G152000.t1"; gene_id "Ledus.S4G152000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10966.t1 is derived from g4584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	933982	935994	.	+	.	Ledus.S4G012200
Ledus.S4	AUGUSTUS	transcript	933982	935994	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	start_codon	933982	933984	.	+	0	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	CDS	933982	934041	0.8	+	0	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	exon	933982	934041	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	intron	934042	934189	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	CDS	934190	934489	1	+	0	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	exon	934190	934489	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	intron	934490	934590	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	CDS	934591	934692	1	+	0	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	exon	934591	934692	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	intron	934693	934792	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	CDS	934793	934987	1	+	0	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	exon	934793	934987	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	intron	934988	935085	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	CDS	935086	935388	1	+	0	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	exon	935086	935388	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	intron	935389	935486	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	CDS	935487	935670	1	+	0	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	exon	935487	935670	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	intron	935671	935764	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	CDS	935765	935811	0.96	+	2	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	exon	935765	935811	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	intron	935812	935922	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	CDS	935923	935994	0.96	+	0	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	exon	935923	935994	.	+	.	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
Ledus.S4	AUGUSTUS	stop_codon	935995	935997	.	+	0	transcript_id "Ledus.S4G012200.t1"; gene_id "Ledus.S4G012200"
# This transcript jg8032.t2 is derived from g12703.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8033.t1 is derived from g12704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8604214	8619718	.	-	.	Ledus.S5G081100
Ledus.S5	AUGUSTUS	transcript	8604214	8619718	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	stop_codon	8604211	8604213	.	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8604214	8604233	0.99	-	2	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8604214	8604233	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8604234	8604322	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8604323	8604366	0.99	-	1	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8604323	8604366	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8604367	8604595	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8604596	8604870	0.88	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8604596	8604870	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8604871	8604967	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8604968	8605129	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8604968	8605129	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8605130	8605245	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8605246	8605380	0.97	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8605246	8605380	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8605381	8605457	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8605458	8605530	1	-	1	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8605458	8605530	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8605531	8605632	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8605633	8605694	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8605633	8605694	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8605695	8605797	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8605798	8605881	0.99	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8605798	8605881	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8605882	8605967	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8605968	8606096	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8605968	8606096	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8606097	8606181	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8606182	8606355	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8606182	8606355	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8606356	8606447	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8606448	8606608	0.96	-	2	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8606448	8606608	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8606609	8606719	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8606720	8606786	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8606720	8606786	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8606787	8606931	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8606932	8607006	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8606932	8607006	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8607007	8607144	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8607145	8607225	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8607145	8607225	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8607226	8607321	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8607322	8607516	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8607322	8607516	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8607517	8607678	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8607679	8607792	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8607679	8607792	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8607793	8607879	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8607880	8608086	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8607880	8608086	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8608087	8608255	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8608256	8608461	1	-	2	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8608256	8608461	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8608462	8608583	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8608584	8608752	0.88	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8608584	8608752	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8608753	8608853	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8608854	8608985	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8608854	8608985	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8608986	8609067	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8609068	8609208	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8609068	8609208	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8609209	8609299	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8609300	8609401	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8609300	8609401	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8609402	8609511	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8609512	8609580	0.98	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8609512	8609580	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8609581	8609682	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8609683	8609748	0.97	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8609683	8609748	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8609749	8609855	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8609856	8610041	0.76	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8609856	8610041	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8610042	8610201	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8610202	8610311	1	-	2	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8610202	8610311	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8610312	8610458	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8610459	8610556	1	-	1	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8610459	8610556	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8610557	8610668	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8610669	8610730	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8610669	8610730	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8610731	8610863	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8610864	8610998	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8610864	8610998	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8610999	8611126	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8611127	8611198	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8611127	8611198	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8611199	8611284	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8611285	8611437	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8611285	8611437	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8611438	8611519	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8611520	8611672	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8611520	8611672	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8611673	8611756	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8611757	8611960	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8611757	8611960	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8611961	8612088	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8612089	8612212	1	-	1	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8612089	8612212	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8612213	8612306	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8612307	8612359	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8612307	8612359	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8612360	8612645	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8612646	8612779	1	-	2	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8612646	8612779	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8612780	8612870	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8612871	8613033	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8612871	8613033	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8613034	8613263	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8613264	8613362	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8613264	8613362	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8613363	8613464	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8613465	8613563	0.97	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8613465	8613563	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8613564	8613736	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8613737	8613772	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8613737	8613772	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8613773	8613871	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8613872	8613964	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8613872	8613964	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8613965	8614144	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8614145	8614339	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8614145	8614339	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8614340	8614425	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8614426	8614528	1	-	1	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8614426	8614528	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8614529	8614629	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8614630	8614760	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8614630	8614760	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8614761	8614953	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8614954	8615049	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8614954	8615049	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8615050	8615219	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8615220	8615319	1	-	1	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8615220	8615319	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8615320	8615401	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8615402	8615523	0.99	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8615402	8615523	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8615524	8615646	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8615647	8615799	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8615647	8615799	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8615800	8615929	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8615930	8616148	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8615930	8616148	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8616149	8616247	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8616248	8616446	1	-	1	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8616248	8616446	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8616447	8616608	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8616609	8616778	0.97	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8616609	8616778	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8616779	8616887	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8616888	8617031	0.48	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8616888	8617031	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8617032	8617109	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8617110	8617269	1	-	1	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8617110	8617269	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8617270	8617354	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8617355	8617450	1	-	1	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8617355	8617450	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8617451	8617563	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8617564	8617736	0.82	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8617564	8617736	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8617737	8618004	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8618005	8618079	1	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8618005	8618079	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8618080	8618348	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8618349	8618681	0.71	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8618349	8618681	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8618682	8619148	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8619149	8619211	0.41	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8619149	8619211	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	intron	8619212	8619493	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	CDS	8619494	8619718	0.7	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	exon	8619494	8619718	.	-	.	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
Ledus.S5	AUGUSTUS	start_codon	8619716	8619718	.	-	0	transcript_id "Ledus.S5G081100.t1"; gene_id "Ledus.S5G081100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6180.t1 is derived from g3623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29434974	29440323	.	+	.	Ledus.S1G360100
Ledus.S1	AUGUSTUS	transcript	29434974	29440323	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	start_codon	29434974	29434976	.	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29434974	29435810	0.79	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29434974	29435810	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29435811	29435906	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29435907	29436040	1	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29435907	29436040	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29436041	29436149	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29436150	29436285	1	+	1	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29436150	29436285	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29436286	29436384	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29436385	29436573	1	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29436385	29436573	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29436574	29436694	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29436695	29436846	1	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29436695	29436846	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29436847	29436941	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29436942	29437026	1	+	1	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29436942	29437026	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29437027	29437102	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29437103	29437360	0.66	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29437103	29437360	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29437361	29437474	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29437475	29437615	0.66	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29437475	29437615	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29437616	29437698	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29437699	29437854	1	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29437699	29437854	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29437855	29437942	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29437943	29438010	1	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29437943	29438010	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29438011	29438102	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29438103	29438225	1	+	1	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29438103	29438225	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29438226	29438309	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29438310	29438409	1	+	1	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29438310	29438409	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29438410	29438656	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29438657	29438769	1	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29438657	29438769	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29438770	29438959	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29438960	29439238	1	+	1	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29438960	29439238	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29439239	29439381	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29439382	29439582	1	+	1	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29439382	29439582	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29439583	29439690	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29439691	29439784	1	+	1	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29439691	29439784	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29439785	29439873	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29439874	29439945	1	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29439874	29439945	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29439946	29440018	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29440019	29440117	1	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29440019	29440117	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	intron	29440118	29440197	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	CDS	29440198	29440323	0.5	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	exon	29440198	29440323	.	+	.	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
Ledus.S1	AUGUSTUS	stop_codon	29440324	29440326	.	+	0	transcript_id "Ledus.S1G360100.t1"; gene_id "Ledus.S1G360100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg378.t1 is derived from g7239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2032559	2034169	.	-	.	Ledus.S2G026000
Ledus.S2	AUGUSTUS	transcript	2032559	2034169	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	stop_codon	2032556	2032558	.	-	0	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	CDS	2032559	2032966	0.56	-	0	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	exon	2032559	2032966	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	intron	2032967	2033077	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	CDS	2033078	2033146	0.56	-	0	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	exon	2033078	2033146	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	intron	2033147	2033235	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	CDS	2033236	2033301	1	-	0	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	exon	2033236	2033301	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	intron	2033302	2033395	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	CDS	2033396	2033485	1	-	0	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	exon	2033396	2033485	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	intron	2033486	2033586	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	CDS	2033587	2033632	1	-	1	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	exon	2033587	2033632	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	intron	2033633	2033828	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	CDS	2033829	2033930	1	-	1	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	exon	2033829	2033930	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	intron	2033931	2034011	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	CDS	2034012	2034169	0.85	-	0	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	exon	2034012	2034169	.	-	.	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
Ledus.S2	AUGUSTUS	start_codon	2034167	2034169	.	-	0	transcript_id "Ledus.S2G026000.t1"; gene_id "Ledus.S2G026000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6005.t1 is derived from g3448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28224386	28225519	.	+	.	Ledus.S1G342600
Ledus.S1	AUGUSTUS	transcript	28224386	28225519	.	+	.	transcript_id "Ledus.S1G342600.t1"; gene_id "Ledus.S1G342600"
Ledus.S1	AUGUSTUS	start_codon	28224386	28224388	.	+	0	transcript_id "Ledus.S1G342600.t1"; gene_id "Ledus.S1G342600"
Ledus.S1	AUGUSTUS	CDS	28224386	28225276	1	+	0	transcript_id "Ledus.S1G342600.t1"; gene_id "Ledus.S1G342600"
Ledus.S1	AUGUSTUS	exon	28224386	28225276	.	+	.	transcript_id "Ledus.S1G342600.t1"; gene_id "Ledus.S1G342600"
Ledus.S1	AUGUSTUS	intron	28225277	28225360	.	+	.	transcript_id "Ledus.S1G342600.t1"; gene_id "Ledus.S1G342600"
Ledus.S1	AUGUSTUS	CDS	28225361	28225519	0.83	+	0	transcript_id "Ledus.S1G342600.t1"; gene_id "Ledus.S1G342600"
Ledus.S1	AUGUSTUS	exon	28225361	28225519	.	+	.	transcript_id "Ledus.S1G342600.t1"; gene_id "Ledus.S1G342600"
Ledus.S1	AUGUSTUS	stop_codon	28225520	28225522	.	+	0	transcript_id "Ledus.S1G342600.t1"; gene_id "Ledus.S1G342600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8857.t1 is derived from g9887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2324894	2329410	.	-	.	Ledus.S3G033400
Ledus.S3	AUGUSTUS	transcript	2324894	2329410	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	stop_codon	2324891	2324893	.	-	0	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2324894	2325015	1	-	2	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2324894	2325015	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2325016	2325089	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2325090	2325196	1	-	1	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2325090	2325196	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2325197	2325284	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2325285	2325361	1	-	0	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2325285	2325361	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2325362	2325458	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2325459	2325594	1	-	1	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2325459	2325594	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2325595	2325748	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2325749	2325984	1	-	0	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2325749	2325984	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2325985	2326073	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2326074	2326236	0.56	-	1	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2326074	2326236	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2326237	2326375	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2326376	2327437	0.95	-	1	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2326376	2327437	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2327438	2327591	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2327592	2328000	1	-	2	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2327592	2328000	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2328001	2328149	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2328150	2328621	0.98	-	0	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2328150	2328621	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2328622	2328715	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2328716	2328906	1	-	2	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2328716	2328906	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2328907	2328983	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2328984	2329410	0.8	-	0	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2328984	2329410	.	-	.	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	start_codon	2329408	2329410	.	-	0	transcript_id "Ledus.S3G033400.t1"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	transcript	2324894	2329410	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	stop_codon	2324891	2324893	.	-	0	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2324894	2325015	1	-	2	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2324894	2325015	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2325016	2325089	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2325090	2325196	1	-	1	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2325090	2325196	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2325197	2325284	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2325285	2325361	1	-	0	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2325285	2325361	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2325362	2325458	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2325459	2325594	1	-	1	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2325459	2325594	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2325595	2325748	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2325749	2325984	1	-	0	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2325749	2325984	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2325985	2326073	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2326074	2326236	0.57	-	1	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2326074	2326236	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2326237	2326375	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2326376	2327437	0.96	-	1	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2326376	2327437	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2327438	2327591	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2327592	2327975	0.63	-	1	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2327592	2327975	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2327976	2328149	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2328150	2328193	0.41	-	0	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2328150	2328193	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2328194	2328342	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2328343	2328621	0.45	-	0	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2328343	2328621	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2328622	2328715	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2328716	2328906	1	-	2	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2328716	2328906	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	intron	2328907	2328983	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	CDS	2328984	2329410	0.83	-	0	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	exon	2328984	2329410	.	-	.	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
Ledus.S3	AUGUSTUS	start_codon	2329408	2329410	.	-	0	transcript_id "Ledus.S3G033400.t2"; gene_id "Ledus.S3G033400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg991.t1 is derived from g7852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6528071	6529858	.	-	.	Ledus.S2G087300
Ledus.S2	AUGUSTUS	transcript	6528071	6529858	.	-	.	transcript_id "Ledus.S2G087300.t1"; gene_id "Ledus.S2G087300"
Ledus.S2	AUGUSTUS	stop_codon	6528068	6528070	.	-	0	transcript_id "Ledus.S2G087300.t1"; gene_id "Ledus.S2G087300"
Ledus.S2	AUGUSTUS	CDS	6528071	6528416	0.95	-	1	transcript_id "Ledus.S2G087300.t1"; gene_id "Ledus.S2G087300"
Ledus.S2	AUGUSTUS	exon	6528071	6528416	.	-	.	transcript_id "Ledus.S2G087300.t1"; gene_id "Ledus.S2G087300"
Ledus.S2	AUGUSTUS	intron	6528417	6528523	.	-	.	transcript_id "Ledus.S2G087300.t1"; gene_id "Ledus.S2G087300"
Ledus.S2	AUGUSTUS	CDS	6528524	6528834	0.99	-	0	transcript_id "Ledus.S2G087300.t1"; gene_id "Ledus.S2G087300"
Ledus.S2	AUGUSTUS	exon	6528524	6528834	.	-	.	transcript_id "Ledus.S2G087300.t1"; gene_id "Ledus.S2G087300"
Ledus.S2	AUGUSTUS	intron	6528835	6528913	.	-	.	transcript_id "Ledus.S2G087300.t1"; gene_id "Ledus.S2G087300"
Ledus.S2	AUGUSTUS	CDS	6528914	6529858	0.94	-	0	transcript_id "Ledus.S2G087300.t1"; gene_id "Ledus.S2G087300"
Ledus.S2	AUGUSTUS	exon	6528914	6529858	.	-	.	transcript_id "Ledus.S2G087300.t1"; gene_id "Ledus.S2G087300"
Ledus.S2	AUGUSTUS	start_codon	6529856	6529858	.	-	0	transcript_id "Ledus.S2G087300.t1"; gene_id "Ledus.S2G087300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4731.t1 is derived from g2169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19321716	19323012	.	-	.	Ledus.S1G215200
Ledus.S1	AUGUSTUS	transcript	19321716	19323012	.	-	.	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	stop_codon	19321713	19321715	.	-	0	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	CDS	19321716	19321808	0.65	-	0	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	exon	19321716	19321808	.	-	.	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	intron	19321809	19321912	.	-	.	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	CDS	19321913	19322147	0.52	-	1	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	exon	19321913	19322147	.	-	.	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	intron	19322148	19322294	.	-	.	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	CDS	19322295	19322510	0.94	-	1	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	exon	19322295	19322510	.	-	.	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	intron	19322511	19322600	.	-	.	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	CDS	19322601	19322666	0.99	-	1	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	exon	19322601	19322666	.	-	.	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	intron	19322667	19322764	.	-	.	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	CDS	19322765	19322837	0.85	-	2	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	exon	19322765	19322837	.	-	.	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	intron	19322838	19322915	.	-	.	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	CDS	19322916	19323012	0.93	-	0	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	exon	19322916	19323012	.	-	.	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
Ledus.S1	AUGUSTUS	start_codon	19323010	19323012	.	-	0	transcript_id "Ledus.S1G215200.t1"; gene_id "Ledus.S1G215200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8453.t1 is derived from g13125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11779215	11780456	.	+	.	Ledus.S5G123100
Ledus.S5	AUGUSTUS	transcript	11779215	11780456	.	+	.	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	start_codon	11779215	11779217	.	+	0	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	CDS	11779215	11779334	0.77	+	0	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	exon	11779215	11779334	.	+	.	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	intron	11779335	11779520	.	+	.	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	CDS	11779521	11779593	1	+	0	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	exon	11779521	11779593	.	+	.	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	intron	11779594	11779747	.	+	.	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	CDS	11779748	11779812	1	+	2	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	exon	11779748	11779812	.	+	.	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	intron	11779813	11779947	.	+	.	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	CDS	11779948	11780054	1	+	0	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	exon	11779948	11780054	.	+	.	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	intron	11780055	11780287	.	+	.	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	CDS	11780288	11780456	0.98	+	1	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	exon	11780288	11780456	.	+	.	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
Ledus.S5	AUGUSTUS	stop_codon	11780457	11780459	.	+	0	transcript_id "Ledus.S5G123100.t1"; gene_id "Ledus.S5G123100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4347.t1 is derived from g1783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16512670	16513131	.	-	.	Ledus.S1G176800
Ledus.S1	AUGUSTUS	transcript	16512670	16513131	.	-	.	transcript_id "Ledus.S1G176800.t1"; gene_id "Ledus.S1G176800"
Ledus.S1	AUGUSTUS	stop_codon	16512667	16512669	.	-	0	transcript_id "Ledus.S1G176800.t1"; gene_id "Ledus.S1G176800"
Ledus.S1	AUGUSTUS	CDS	16512670	16512730	0.82	-	1	transcript_id "Ledus.S1G176800.t1"; gene_id "Ledus.S1G176800"
Ledus.S1	AUGUSTUS	exon	16512670	16512730	.	-	.	transcript_id "Ledus.S1G176800.t1"; gene_id "Ledus.S1G176800"
Ledus.S1	AUGUSTUS	intron	16512731	16512829	.	-	.	transcript_id "Ledus.S1G176800.t1"; gene_id "Ledus.S1G176800"
Ledus.S1	AUGUSTUS	CDS	16512830	16512909	1	-	0	transcript_id "Ledus.S1G176800.t1"; gene_id "Ledus.S1G176800"
Ledus.S1	AUGUSTUS	exon	16512830	16512909	.	-	.	transcript_id "Ledus.S1G176800.t1"; gene_id "Ledus.S1G176800"
Ledus.S1	AUGUSTUS	intron	16512910	16512990	.	-	.	transcript_id "Ledus.S1G176800.t1"; gene_id "Ledus.S1G176800"
Ledus.S1	AUGUSTUS	CDS	16512991	16513131	0.98	-	0	transcript_id "Ledus.S1G176800.t1"; gene_id "Ledus.S1G176800"
Ledus.S1	AUGUSTUS	exon	16512991	16513131	.	-	.	transcript_id "Ledus.S1G176800.t1"; gene_id "Ledus.S1G176800"
Ledus.S1	AUGUSTUS	start_codon	16513129	16513131	.	-	0	transcript_id "Ledus.S1G176800.t1"; gene_id "Ledus.S1G176800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10500.t1 is derived from g11530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15640787	15642440	.	+	.	Ledus.S3G197700
Ledus.S3	AUGUSTUS	transcript	15640787	15642440	.	+	.	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	start_codon	15640787	15640789	.	+	0	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	CDS	15640787	15640913	0.99	+	0	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	exon	15640787	15640913	.	+	.	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	intron	15640914	15640998	.	+	.	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	CDS	15640999	15641060	1	+	2	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	exon	15640999	15641060	.	+	.	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	intron	15641061	15641207	.	+	.	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	CDS	15641208	15641348	0.44	+	0	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	exon	15641208	15641348	.	+	.	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	intron	15641349	15641561	.	+	.	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	CDS	15641562	15642440	0.45	+	0	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	exon	15641562	15642440	.	+	.	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
Ledus.S3	AUGUSTUS	stop_codon	15642441	15642443	.	+	0	transcript_id "Ledus.S3G197700.t1"; gene_id "Ledus.S3G197700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg81.t1 is derived from g9494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	306906	314249	.	+	.	Ledus.C8G004100
Ledus.C8	AUGUSTUS	transcript	306906	314249	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	start_codon	306906	306908	.	+	0	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	CDS	306906	310995	0.49	+	0	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	exon	306906	310995	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	intron	310996	311099	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	CDS	311100	311380	0.65	+	2	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	exon	311100	311380	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	intron	311381	311460	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	CDS	311461	311793	1	+	0	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	exon	311461	311793	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	intron	311794	311884	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	CDS	311885	311986	1	+	0	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	exon	311885	311986	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	intron	311987	312071	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	CDS	312072	312233	1	+	0	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	exon	312072	312233	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	intron	312234	312356	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	CDS	312357	312419	0.99	+	0	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	exon	312357	312419	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	intron	312420	312513	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	CDS	312514	313246	0.89	+	0	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	exon	312514	313246	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	intron	313247	313312	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	CDS	313313	313407	1	+	2	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	exon	313313	313407	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	intron	313408	313870	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	CDS	313871	314026	0.99	+	0	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	exon	313871	314026	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	intron	314027	314156	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	CDS	314157	314249	0.99	+	0	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	exon	314157	314249	.	+	.	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
Ledus.C8	AUGUSTUS	stop_codon	314250	314252	.	+	0	transcript_id "Ledus.C8G004100.t1"; gene_id "Ledus.C8G004100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7406.t1 is derived from g12077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2121798	2124261	.	+	.	Ledus.S5G018400
Ledus.S5	AUGUSTUS	transcript	2121798	2124261	.	+	.	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	start_codon	2121798	2121800	.	+	0	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	CDS	2121798	2121947	0.89	+	0	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	exon	2121798	2121947	.	+	.	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	intron	2121948	2122132	.	+	.	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	CDS	2122133	2122263	1	+	0	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	exon	2122133	2122263	.	+	.	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	intron	2122264	2122424	.	+	.	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	CDS	2122425	2123310	0.91	+	1	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	exon	2122425	2123310	.	+	.	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	intron	2123311	2124171	.	+	.	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	CDS	2124172	2124261	0.93	+	0	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	exon	2124172	2124261	.	+	.	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
Ledus.S5	AUGUSTUS	stop_codon	2124262	2124264	.	+	0	transcript_id "Ledus.S5G018400.t1"; gene_id "Ledus.S5G018400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10043.t1 is derived from g11073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12162001	12163631	.	+	.	Ledus.S3G152000
Ledus.S3	AUGUSTUS	transcript	12162001	12163631	.	+	.	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	start_codon	12162001	12162003	.	+	0	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	CDS	12162001	12162274	0.67	+	0	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	exon	12162001	12162274	.	+	.	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	intron	12162275	12162348	.	+	.	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	CDS	12162349	12163034	0.65	+	2	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	exon	12162349	12163034	.	+	.	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	intron	12163035	12163120	.	+	.	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	CDS	12163121	12163338	1	+	0	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	exon	12163121	12163338	.	+	.	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	intron	12163339	12163420	.	+	.	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	CDS	12163421	12163631	0.99	+	1	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	exon	12163421	12163631	.	+	.	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
Ledus.S3	AUGUSTUS	stop_codon	12163632	12163634	.	+	0	transcript_id "Ledus.S3G152000.t1"; gene_id "Ledus.S3G152000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7211.t1 is derived from g6742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2224890	2227114	.	-	.	Ledus.C7G027200
Ledus.C7	AUGUSTUS	transcript	2224890	2227114	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	stop_codon	2224887	2224889	.	-	0	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	CDS	2224890	2224895	0.95	-	0	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	exon	2224890	2224895	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	intron	2224896	2225006	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	CDS	2225007	2225243	0.98	-	0	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	exon	2225007	2225243	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	intron	2225244	2226030	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	CDS	2226031	2226272	1	-	2	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	exon	2226031	2226272	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	intron	2226273	2226449	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	CDS	2226450	2226481	1	-	1	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	exon	2226450	2226481	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	intron	2226482	2226728	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	CDS	2226729	2226734	0.86	-	1	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	exon	2226729	2226734	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	intron	2226735	2226837	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	CDS	2226838	2226851	0.55	-	0	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	exon	2226838	2226851	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	intron	2226852	2226946	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	CDS	2226947	2227114	1	-	0	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	exon	2226947	2227114	.	-	.	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
Ledus.C7	AUGUSTUS	start_codon	2227112	2227114	.	-	0	transcript_id "Ledus.C7G027200.t1"; gene_id "Ledus.C7G027200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12356.t1 is derived from g5977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11385951	11387955	.	+	.	Ledus.S4G151200
Ledus.S4	AUGUSTUS	transcript	11385951	11387955	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	start_codon	11385951	11385953	.	+	0	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	CDS	11385951	11385968	0.88	+	0	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	exon	11385951	11385968	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	intron	11385969	11386230	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	CDS	11386231	11386274	0.88	+	0	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	exon	11386231	11386274	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	intron	11386275	11386352	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	CDS	11386353	11386389	0.88	+	1	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	exon	11386353	11386389	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	intron	11386390	11386523	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	CDS	11386524	11386614	0.88	+	0	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	exon	11386524	11386614	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	intron	11386615	11386868	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	CDS	11386869	11386907	0.95	+	2	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	exon	11386869	11386907	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	intron	11386908	11386985	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	CDS	11386986	11386990	0.95	+	2	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	exon	11386986	11386990	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	intron	11386991	11387263	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	CDS	11387264	11387274	0.94	+	0	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	exon	11387264	11387274	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	intron	11387275	11387409	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	CDS	11387410	11387427	0.91	+	1	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	exon	11387410	11387427	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	intron	11387428	11387644	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	CDS	11387645	11387707	1	+	1	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	exon	11387645	11387707	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	intron	11387708	11387948	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	CDS	11387949	11387955	1	+	1	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	exon	11387949	11387955	.	+	.	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
Ledus.S4	AUGUSTUS	stop_codon	11387956	11387958	.	+	0	transcript_id "Ledus.S4G151200.t1"; gene_id "Ledus.S4G151200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11368.t1 is derived from g4986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3841324	3844554	.	+	.	Ledus.S4G052400
Ledus.S4	AUGUSTUS	transcript	3841324	3844554	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	start_codon	3841324	3841326	.	+	0	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	CDS	3841324	3841370	0.67	+	0	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	exon	3841324	3841370	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	intron	3841371	3841480	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	CDS	3841481	3841546	0.86	+	1	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	exon	3841481	3841546	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	intron	3841547	3841737	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	CDS	3841738	3841962	0.99	+	1	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	exon	3841738	3841962	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	intron	3841963	3842497	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	CDS	3842498	3842741	1	+	1	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	exon	3842498	3842741	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	intron	3842742	3842876	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	CDS	3842877	3843026	1	+	0	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	exon	3842877	3843026	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	intron	3843027	3843145	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	CDS	3843146	3843203	1	+	0	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	exon	3843146	3843203	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	intron	3843204	3843293	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	CDS	3843294	3843386	0.98	+	2	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	exon	3843294	3843386	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	intron	3843387	3843492	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	CDS	3843493	3843591	0.99	+	2	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	exon	3843493	3843591	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	intron	3843592	3843753	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	CDS	3843754	3843845	1	+	2	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	exon	3843754	3843845	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	intron	3843846	3844012	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	CDS	3844013	3844072	1	+	0	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	exon	3844013	3844072	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	intron	3844073	3844212	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	CDS	3844213	3844554	0.98	+	0	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	exon	3844213	3844554	.	+	.	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
Ledus.S4	AUGUSTUS	stop_codon	3844555	3844557	.	+	0	transcript_id "Ledus.S4G052400.t1"; gene_id "Ledus.S4G052400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13067.t1 is derived from g6877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4802780	4803253	.	-	.	Ledus.S6G012900
Ledus.S6	AUGUSTUS	transcript	4802780	4803253	.	-	.	transcript_id "Ledus.S6G012900.t1"; gene_id "Ledus.S6G012900"
Ledus.S6	AUGUSTUS	stop_codon	4802777	4802779	.	-	0	transcript_id "Ledus.S6G012900.t1"; gene_id "Ledus.S6G012900"
Ledus.S6	AUGUSTUS	CDS	4802780	4803253	0.24	-	0	transcript_id "Ledus.S6G012900.t1"; gene_id "Ledus.S6G012900"
Ledus.S6	AUGUSTUS	exon	4802780	4803253	.	-	.	transcript_id "Ledus.S6G012900.t1"; gene_id "Ledus.S6G012900"
Ledus.S6	AUGUSTUS	start_codon	4803251	4803253	.	-	0	transcript_id "Ledus.S6G012900.t1"; gene_id "Ledus.S6G012900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12805.t1 is derived from g6427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14844325	14845119	.	-	.	Ledus.S4G196100
Ledus.S4	AUGUSTUS	transcript	14844325	14845119	.	-	.	transcript_id "Ledus.S4G196100.t1"; gene_id "Ledus.S4G196100"
Ledus.S4	AUGUSTUS	stop_codon	14844322	14844324	.	-	0	transcript_id "Ledus.S4G196100.t1"; gene_id "Ledus.S4G196100"
Ledus.S4	AUGUSTUS	CDS	14844325	14845119	0.63	-	0	transcript_id "Ledus.S4G196100.t1"; gene_id "Ledus.S4G196100"
Ledus.S4	AUGUSTUS	exon	14844325	14845119	.	-	.	transcript_id "Ledus.S4G196100.t1"; gene_id "Ledus.S4G196100"
Ledus.S4	AUGUSTUS	start_codon	14845117	14845119	.	-	0	transcript_id "Ledus.S4G196100.t1"; gene_id "Ledus.S4G196100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2189.t1 is derived from g9052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15835388	15836392	.	+	.	Ledus.S2G207100
Ledus.S2	AUGUSTUS	transcript	15835388	15836392	.	+	.	transcript_id "Ledus.S2G207100.t1"; gene_id "Ledus.S2G207100"
Ledus.S2	AUGUSTUS	start_codon	15835388	15835390	.	+	0	transcript_id "Ledus.S2G207100.t1"; gene_id "Ledus.S2G207100"
Ledus.S2	AUGUSTUS	CDS	15835388	15836392	0.55	+	0	transcript_id "Ledus.S2G207100.t1"; gene_id "Ledus.S2G207100"
Ledus.S2	AUGUSTUS	exon	15835388	15836392	.	+	.	transcript_id "Ledus.S2G207100.t1"; gene_id "Ledus.S2G207100"
Ledus.S2	AUGUSTUS	stop_codon	15836393	15836395	.	+	0	transcript_id "Ledus.S2G207100.t1"; gene_id "Ledus.S2G207100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5574.t1 is derived from g3013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25219849	25224721	.	+	.	Ledus.S1G299500
Ledus.S1	AUGUSTUS	transcript	25219849	25224721	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	start_codon	25219849	25219851	.	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25219849	25219971	0.58	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25219849	25219971	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25219972	25220057	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25220058	25220177	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25220058	25220177	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25220178	25220273	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25220274	25220372	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25220274	25220372	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25220373	25220452	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25220453	25220590	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25220453	25220590	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25220591	25220678	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25220679	25220813	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25220679	25220813	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25220814	25220905	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25220906	25221085	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25220906	25221085	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25221086	25221178	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25221179	25221385	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25221179	25221385	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25221386	25221475	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25221476	25221595	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25221476	25221595	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25221596	25221692	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25221693	25221812	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25221693	25221812	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25221813	25221907	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25221908	25222030	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25221908	25222030	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25222031	25222153	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25222154	25222262	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25222154	25222262	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25222263	25222348	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25222349	25222489	1	+	2	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25222349	25222489	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25222490	25222592	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25222593	25222757	0.97	+	2	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25222593	25222757	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25222758	25222871	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25222872	25223110	0.97	+	2	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25222872	25223110	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25223111	25223202	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25223203	25223235	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25223203	25223235	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25223236	25223353	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25223354	25223435	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25223354	25223435	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25223436	25223519	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25223520	25223680	1	+	2	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25223520	25223680	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25223681	25223773	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25223774	25223947	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25223774	25223947	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25223948	25224056	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25224057	25224239	1	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25224057	25224239	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25224240	25224344	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25224345	25224526	0.99	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25224345	25224526	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	intron	25224527	25224627	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	CDS	25224628	25224721	0.95	+	1	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	exon	25224628	25224721	.	+	.	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
Ledus.S1	AUGUSTUS	stop_codon	25224722	25224724	.	+	0	transcript_id "Ledus.S1G299500.t1"; gene_id "Ledus.S1G299500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4949.t1 is derived from g2387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20837045	20839280	.	+	.	Ledus.S1G237000
Ledus.S1	AUGUSTUS	transcript	20837045	20839280	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	start_codon	20837045	20837047	.	+	0	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	CDS	20837045	20837246	0.83	+	0	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	exon	20837045	20837246	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	intron	20837247	20837320	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	CDS	20837321	20837391	1	+	2	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	exon	20837321	20837391	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	intron	20837392	20837480	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	CDS	20837481	20837816	0.98	+	0	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	exon	20837481	20837816	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	intron	20837817	20837892	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	CDS	20837893	20838000	1	+	0	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	exon	20837893	20838000	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	intron	20838001	20838078	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	CDS	20838079	20838273	1	+	0	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	exon	20838079	20838273	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	intron	20838274	20838348	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	CDS	20838349	20838735	0.94	+	0	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	exon	20838349	20838735	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	intron	20838736	20838818	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	CDS	20838819	20839280	0.9	+	0	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	exon	20838819	20839280	.	+	.	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
Ledus.S1	AUGUSTUS	stop_codon	20839281	20839283	.	+	0	transcript_id "Ledus.S1G237000.t1"; gene_id "Ledus.S1G237000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8068.t1 is derived from g12739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9031568	9032779	.	+	.	Ledus.S5G084600
Ledus.S5	AUGUSTUS	transcript	9031568	9032779	.	+	.	transcript_id "Ledus.S5G084600.t1"; gene_id "Ledus.S5G084600"
Ledus.S5	AUGUSTUS	start_codon	9031568	9031570	.	+	0	transcript_id "Ledus.S5G084600.t1"; gene_id "Ledus.S5G084600"
Ledus.S5	AUGUSTUS	CDS	9031568	9032779	1	+	0	transcript_id "Ledus.S5G084600.t1"; gene_id "Ledus.S5G084600"
Ledus.S5	AUGUSTUS	exon	9031568	9032779	.	+	.	transcript_id "Ledus.S5G084600.t1"; gene_id "Ledus.S5G084600"
Ledus.S5	AUGUSTUS	stop_codon	9032780	9032782	.	+	0	transcript_id "Ledus.S5G084600.t1"; gene_id "Ledus.S5G084600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8123.t1 is derived from g12794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9227972	9228295	.	+	.	Ledus.S5G090100
Ledus.S5	AUGUSTUS	transcript	9227972	9228295	.	+	.	transcript_id "Ledus.S5G090100.t1"; gene_id "Ledus.S5G090100"
Ledus.S5	AUGUSTUS	start_codon	9227972	9227974	.	+	0	transcript_id "Ledus.S5G090100.t1"; gene_id "Ledus.S5G090100"
Ledus.S5	AUGUSTUS	CDS	9227972	9228295	0.42	+	0	transcript_id "Ledus.S5G090100.t1"; gene_id "Ledus.S5G090100"
Ledus.S5	AUGUSTUS	exon	9227972	9228295	.	+	.	transcript_id "Ledus.S5G090100.t1"; gene_id "Ledus.S5G090100"
Ledus.S5	AUGUSTUS	stop_codon	9228296	9228298	.	+	0	transcript_id "Ledus.S5G090100.t1"; gene_id "Ledus.S5G090100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6871.t1 is derived from g4315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34890265	34892002	.	+	.	Ledus.S1G429200
Ledus.S1	AUGUSTUS	transcript	34890265	34892002	.	+	.	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	start_codon	34890265	34890267	.	+	0	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	CDS	34890265	34890323	0.36	+	0	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	exon	34890265	34890323	.	+	.	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	intron	34890324	34890432	.	+	.	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	CDS	34890433	34890508	0.63	+	1	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	exon	34890433	34890508	.	+	.	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	intron	34890509	34890577	.	+	.	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	CDS	34890578	34890610	0.58	+	0	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	exon	34890578	34890610	.	+	.	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	intron	34890611	34890712	.	+	.	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	CDS	34890713	34890823	0.62	+	0	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	exon	34890713	34890823	.	+	.	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	intron	34890824	34891258	.	+	.	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	CDS	34891259	34892002	1	+	0	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	exon	34891259	34892002	.	+	.	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
Ledus.S1	AUGUSTUS	stop_codon	34892003	34892005	.	+	0	transcript_id "Ledus.S1G429200.t1"; gene_id "Ledus.S1G429200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4571.t1 is derived from g2008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17767306	17768445	.	+	.	Ledus.S1G199200
Ledus.S1	AUGUSTUS	transcript	17767306	17768445	.	+	.	transcript_id "Ledus.S1G199200.t1"; gene_id "Ledus.S1G199200"
Ledus.S1	AUGUSTUS	start_codon	17767306	17767308	.	+	0	transcript_id "Ledus.S1G199200.t1"; gene_id "Ledus.S1G199200"
Ledus.S1	AUGUSTUS	CDS	17767306	17767440	0.85	+	0	transcript_id "Ledus.S1G199200.t1"; gene_id "Ledus.S1G199200"
Ledus.S1	AUGUSTUS	exon	17767306	17767440	.	+	.	transcript_id "Ledus.S1G199200.t1"; gene_id "Ledus.S1G199200"
Ledus.S1	AUGUSTUS	intron	17767441	17767530	.	+	.	transcript_id "Ledus.S1G199200.t1"; gene_id "Ledus.S1G199200"
Ledus.S1	AUGUSTUS	CDS	17767531	17768445	0.9	+	0	transcript_id "Ledus.S1G199200.t1"; gene_id "Ledus.S1G199200"
Ledus.S1	AUGUSTUS	exon	17767531	17768445	.	+	.	transcript_id "Ledus.S1G199200.t1"; gene_id "Ledus.S1G199200"
Ledus.S1	AUGUSTUS	stop_codon	17768446	17768448	.	+	0	transcript_id "Ledus.S1G199200.t1"; gene_id "Ledus.S1G199200"
# This transcript jg84.t2 is derived from g9497.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg85.t1 is derived from g9498.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	360332	363110	.	+	.	Ledus.C8G004500
Ledus.C8	AUGUSTUS	transcript	360332	363110	.	+	.	transcript_id "Ledus.C8G004500.t1"; gene_id "Ledus.C8G004500"
Ledus.C8	AUGUSTUS	start_codon	360332	360334	.	+	0	transcript_id "Ledus.C8G004500.t1"; gene_id "Ledus.C8G004500"
Ledus.C8	AUGUSTUS	CDS	360332	360467	0.99	+	0	transcript_id "Ledus.C8G004500.t1"; gene_id "Ledus.C8G004500"
Ledus.C8	AUGUSTUS	exon	360332	360467	.	+	.	transcript_id "Ledus.C8G004500.t1"; gene_id "Ledus.C8G004500"
Ledus.C8	AUGUSTUS	intron	360468	360564	.	+	.	transcript_id "Ledus.C8G004500.t1"; gene_id "Ledus.C8G004500"
Ledus.C8	AUGUSTUS	CDS	360565	363110	0.98	+	2	transcript_id "Ledus.C8G004500.t1"; gene_id "Ledus.C8G004500"
Ledus.C8	AUGUSTUS	exon	360565	363110	.	+	.	transcript_id "Ledus.C8G004500.t1"; gene_id "Ledus.C8G004500"
Ledus.C8	AUGUSTUS	stop_codon	363111	363113	.	+	0	transcript_id "Ledus.C8G004500.t1"; gene_id "Ledus.C8G004500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12051.t1 is derived from g5670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9201592	9203199	.	-	.	Ledus.S4G120700
Ledus.S4	AUGUSTUS	transcript	9201592	9203199	.	-	.	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	stop_codon	9201589	9201591	.	-	0	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	CDS	9201592	9201723	0.97	-	0	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	exon	9201592	9201723	.	-	.	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	intron	9201724	9201945	.	-	.	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	CDS	9201946	9202116	1	-	0	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	exon	9201946	9202116	.	-	.	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	intron	9202117	9202467	.	-	.	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	CDS	9202468	9202738	1	-	1	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	exon	9202468	9202738	.	-	.	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	intron	9202739	9202945	.	-	.	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	CDS	9202946	9203199	0.85	-	0	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	exon	9202946	9203199	.	-	.	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
Ledus.S4	AUGUSTUS	start_codon	9203197	9203199	.	-	0	transcript_id "Ledus.S4G120700.t1"; gene_id "Ledus.S4G120700"
# This transcript jg2409.t2 is derived from g9272.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2410.t1 is derived from g9273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17979133	17980554	.	-	.	Ledus.S2G229200
Ledus.S2	AUGUSTUS	transcript	17979133	17980554	.	-	.	transcript_id "Ledus.S2G229200.t1"; gene_id "Ledus.S2G229200"
Ledus.S2	AUGUSTUS	stop_codon	17979130	17979132	.	-	0	transcript_id "Ledus.S2G229200.t1"; gene_id "Ledus.S2G229200"
Ledus.S2	AUGUSTUS	CDS	17979133	17980554	0.82	-	0	transcript_id "Ledus.S2G229200.t1"; gene_id "Ledus.S2G229200"
Ledus.S2	AUGUSTUS	exon	17979133	17980554	.	-	.	transcript_id "Ledus.S2G229200.t1"; gene_id "Ledus.S2G229200"
Ledus.S2	AUGUSTUS	start_codon	17980552	17980554	.	-	0	transcript_id "Ledus.S2G229200.t1"; gene_id "Ledus.S2G229200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12746.t1 is derived from g6368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14189624	14191293	.	-	.	Ledus.S4G190200
Ledus.S4	AUGUSTUS	transcript	14189624	14191293	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	stop_codon	14189621	14189623	.	-	0	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	CDS	14189624	14189687	0.99	-	1	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	exon	14189624	14189687	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	intron	14189688	14189767	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	CDS	14189768	14189848	1	-	1	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	exon	14189768	14189848	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	intron	14189849	14189947	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	CDS	14189948	14190133	1	-	1	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	exon	14189948	14190133	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	intron	14190134	14190221	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	CDS	14190222	14190372	1	-	2	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	exon	14190222	14190372	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	intron	14190373	14190451	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	CDS	14190452	14190563	1	-	0	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	exon	14190452	14190563	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	intron	14190564	14190676	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	CDS	14190677	14190821	1	-	1	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	exon	14190677	14190821	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	intron	14190822	14190907	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	CDS	14190908	14191293	0.91	-	0	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	exon	14190908	14191293	.	-	.	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
Ledus.S4	AUGUSTUS	start_codon	14191291	14191293	.	-	0	transcript_id "Ledus.S4G190200.t1"; gene_id "Ledus.S4G190200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6635.t1 is derived from g4078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32805467	32806378	.	-	.	Ledus.S1G405600
Ledus.S1	AUGUSTUS	transcript	32805467	32806378	.	-	.	transcript_id "Ledus.S1G405600.t1"; gene_id "Ledus.S1G405600"
Ledus.S1	AUGUSTUS	stop_codon	32805464	32805466	.	-	0	transcript_id "Ledus.S1G405600.t1"; gene_id "Ledus.S1G405600"
Ledus.S1	AUGUSTUS	CDS	32805467	32806378	0.86	-	0	transcript_id "Ledus.S1G405600.t1"; gene_id "Ledus.S1G405600"
Ledus.S1	AUGUSTUS	exon	32805467	32806378	.	-	.	transcript_id "Ledus.S1G405600.t1"; gene_id "Ledus.S1G405600"
Ledus.S1	AUGUSTUS	start_codon	32806376	32806378	.	-	0	transcript_id "Ledus.S1G405600.t1"; gene_id "Ledus.S1G405600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3407.t1 is derived from g842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8115267	8116995	.	-	.	Ledus.S1G082800
Ledus.S1	AUGUSTUS	transcript	8115267	8116995	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	stop_codon	8115264	8115266	.	-	0	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	CDS	8115267	8115782	1	-	0	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	exon	8115267	8115782	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	intron	8115783	8115935	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	CDS	8115936	8115998	1	-	0	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	exon	8115936	8115998	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	intron	8115999	8116132	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	CDS	8116133	8116185	1	-	2	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	exon	8116133	8116185	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	intron	8116186	8116278	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	CDS	8116279	8116381	1	-	0	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	exon	8116279	8116381	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	intron	8116382	8116536	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	CDS	8116537	8116585	1	-	1	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	exon	8116537	8116585	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	intron	8116586	8116693	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	CDS	8116694	8116771	1	-	1	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	exon	8116694	8116771	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	intron	8116772	8116939	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	CDS	8116940	8116995	0.88	-	0	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	exon	8116940	8116995	.	-	.	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
Ledus.S1	AUGUSTUS	start_codon	8116993	8116995	.	-	0	transcript_id "Ledus.S1G082800.t1"; gene_id "Ledus.S1G082800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10348.t1 is derived from g11378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14356154	14358086	.	+	.	Ledus.S3G182500
Ledus.S3	AUGUSTUS	transcript	14356154	14358086	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	start_codon	14356154	14356156	.	+	0	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	CDS	14356154	14356283	0.94	+	0	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	exon	14356154	14356283	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	intron	14356284	14356375	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	CDS	14356376	14356496	1	+	2	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	exon	14356376	14356496	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	intron	14356497	14356585	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	CDS	14356586	14356655	1	+	1	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	exon	14356586	14356655	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	intron	14356656	14356758	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	CDS	14356759	14356854	1	+	0	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	exon	14356759	14356854	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	intron	14356855	14356994	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	CDS	14356995	14357092	1	+	0	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	exon	14356995	14357092	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	intron	14357093	14357204	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	CDS	14357205	14357316	1	+	1	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	exon	14357205	14357316	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	intron	14357317	14357449	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	CDS	14357450	14357491	1	+	0	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	exon	14357450	14357491	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	intron	14357492	14357592	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	CDS	14357593	14357649	1	+	0	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	exon	14357593	14357649	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	intron	14357650	14357748	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	CDS	14357749	14357799	1	+	0	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	exon	14357749	14357799	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	intron	14357800	14357885	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	CDS	14357886	14357942	1	+	0	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	exon	14357886	14357942	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	intron	14357943	14358071	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	CDS	14358072	14358086	0.94	+	0	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	exon	14358072	14358086	.	+	.	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
Ledus.S3	AUGUSTUS	stop_codon	14358087	14358089	.	+	0	transcript_id "Ledus.S3G182500.t1"; gene_id "Ledus.S3G182500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2208.t1 is derived from g9071.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16053831	16054827	.	-	.	Ledus.S2G209000
Ledus.S2	AUGUSTUS	transcript	16053831	16054827	.	-	.	transcript_id "Ledus.S2G209000.t1"; gene_id "Ledus.S2G209000"
Ledus.S2	AUGUSTUS	stop_codon	16053828	16053830	.	-	0	transcript_id "Ledus.S2G209000.t1"; gene_id "Ledus.S2G209000"
Ledus.S2	AUGUSTUS	CDS	16053831	16054040	0.71	-	0	transcript_id "Ledus.S2G209000.t1"; gene_id "Ledus.S2G209000"
Ledus.S2	AUGUSTUS	exon	16053831	16054040	.	-	.	transcript_id "Ledus.S2G209000.t1"; gene_id "Ledus.S2G209000"
Ledus.S2	AUGUSTUS	intron	16054041	16054158	.	-	.	transcript_id "Ledus.S2G209000.t1"; gene_id "Ledus.S2G209000"
Ledus.S2	AUGUSTUS	CDS	16054159	16054827	0.2	-	0	transcript_id "Ledus.S2G209000.t1"; gene_id "Ledus.S2G209000"
Ledus.S2	AUGUSTUS	exon	16054159	16054827	.	-	.	transcript_id "Ledus.S2G209000.t1"; gene_id "Ledus.S2G209000"
Ledus.S2	AUGUSTUS	start_codon	16054825	16054827	.	-	0	transcript_id "Ledus.S2G209000.t1"; gene_id "Ledus.S2G209000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7489.t1 is derived from g12160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3386490	3386990	.	+	.	Ledus.S5G026700
Ledus.S5	AUGUSTUS	transcript	3386490	3386990	.	+	.	transcript_id "Ledus.S5G026700.t1"; gene_id "Ledus.S5G026700"
Ledus.S5	AUGUSTUS	start_codon	3386490	3386492	.	+	0	transcript_id "Ledus.S5G026700.t1"; gene_id "Ledus.S5G026700"
Ledus.S5	AUGUSTUS	CDS	3386490	3386990	0.64	+	0	transcript_id "Ledus.S5G026700.t1"; gene_id "Ledus.S5G026700"
Ledus.S5	AUGUSTUS	exon	3386490	3386990	.	+	.	transcript_id "Ledus.S5G026700.t1"; gene_id "Ledus.S5G026700"
Ledus.S5	AUGUSTUS	stop_codon	3386991	3386993	.	+	0	transcript_id "Ledus.S5G026700.t1"; gene_id "Ledus.S5G026700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12185.t1 is derived from g5804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10198853	10200026	.	+	.	Ledus.S4G134100
Ledus.S4	AUGUSTUS	transcript	10198853	10200026	.	+	.	transcript_id "Ledus.S4G134100.t1"; gene_id "Ledus.S4G134100"
Ledus.S4	AUGUSTUS	start_codon	10198853	10198855	.	+	0	transcript_id "Ledus.S4G134100.t1"; gene_id "Ledus.S4G134100"
Ledus.S4	AUGUSTUS	CDS	10198853	10199194	0.77	+	0	transcript_id "Ledus.S4G134100.t1"; gene_id "Ledus.S4G134100"
Ledus.S4	AUGUSTUS	exon	10198853	10199194	.	+	.	transcript_id "Ledus.S4G134100.t1"; gene_id "Ledus.S4G134100"
Ledus.S4	AUGUSTUS	intron	10199195	10199438	.	+	.	transcript_id "Ledus.S4G134100.t1"; gene_id "Ledus.S4G134100"
Ledus.S4	AUGUSTUS	CDS	10199439	10200026	0.96	+	0	transcript_id "Ledus.S4G134100.t1"; gene_id "Ledus.S4G134100"
Ledus.S4	AUGUSTUS	exon	10199439	10200026	.	+	.	transcript_id "Ledus.S4G134100.t1"; gene_id "Ledus.S4G134100"
Ledus.S4	AUGUSTUS	stop_codon	10200027	10200029	.	+	0	transcript_id "Ledus.S4G134100.t1"; gene_id "Ledus.S4G134100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3712.t1 is derived from g1148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11091485	11092640	.	+	.	Ledus.S1G113300
Ledus.S1	AUGUSTUS	transcript	11091485	11092640	.	+	.	transcript_id "Ledus.S1G113300.t1"; gene_id "Ledus.S1G113300"
Ledus.S1	AUGUSTUS	start_codon	11091485	11091487	.	+	0	transcript_id "Ledus.S1G113300.t1"; gene_id "Ledus.S1G113300"
Ledus.S1	AUGUSTUS	CDS	11091485	11091811	0.96	+	0	transcript_id "Ledus.S1G113300.t1"; gene_id "Ledus.S1G113300"
Ledus.S1	AUGUSTUS	exon	11091485	11091811	.	+	.	transcript_id "Ledus.S1G113300.t1"; gene_id "Ledus.S1G113300"
Ledus.S1	AUGUSTUS	intron	11091812	11092153	.	+	.	transcript_id "Ledus.S1G113300.t1"; gene_id "Ledus.S1G113300"
Ledus.S1	AUGUSTUS	CDS	11092154	11092283	1	+	0	transcript_id "Ledus.S1G113300.t1"; gene_id "Ledus.S1G113300"
Ledus.S1	AUGUSTUS	exon	11092154	11092283	.	+	.	transcript_id "Ledus.S1G113300.t1"; gene_id "Ledus.S1G113300"
Ledus.S1	AUGUSTUS	intron	11092284	11092425	.	+	.	transcript_id "Ledus.S1G113300.t1"; gene_id "Ledus.S1G113300"
Ledus.S1	AUGUSTUS	CDS	11092426	11092640	0.9	+	2	transcript_id "Ledus.S1G113300.t1"; gene_id "Ledus.S1G113300"
Ledus.S1	AUGUSTUS	exon	11092426	11092640	.	+	.	transcript_id "Ledus.S1G113300.t1"; gene_id "Ledus.S1G113300"
Ledus.S1	AUGUSTUS	stop_codon	11092641	11092643	.	+	0	transcript_id "Ledus.S1G113300.t1"; gene_id "Ledus.S1G113300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8822.t1 is derived from g9852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2159862	2164404	.	+	.	Ledus.S3G029900
Ledus.S3	AUGUSTUS	transcript	2159862	2164404	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	start_codon	2159862	2159864	.	+	0	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	CDS	2159862	2160577	0.95	+	0	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	exon	2159862	2160577	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	intron	2160578	2161062	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	CDS	2161063	2162965	1	+	1	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	exon	2161063	2162965	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	intron	2162966	2163049	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	CDS	2163050	2163176	1	+	0	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	exon	2163050	2163176	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	intron	2163177	2163249	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	CDS	2163250	2163347	1	+	2	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	exon	2163250	2163347	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	intron	2163348	2163480	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	CDS	2163481	2163546	1	+	0	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	exon	2163481	2163546	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	intron	2163547	2163671	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	CDS	2163672	2163761	1	+	0	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	exon	2163672	2163761	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	intron	2163762	2163985	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	CDS	2163986	2164162	1	+	0	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	exon	2163986	2164162	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	intron	2164163	2164368	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	CDS	2164369	2164404	1	+	0	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	exon	2164369	2164404	.	+	.	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
Ledus.S3	AUGUSTUS	stop_codon	2164405	2164407	.	+	0	transcript_id "Ledus.S3G029900.t1"; gene_id "Ledus.S3G029900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3642.t1 is derived from g1078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10348621	10350209	.	-	.	Ledus.S1G106300
Ledus.S1	AUGUSTUS	transcript	10348621	10350209	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	stop_codon	10348618	10348620	.	-	0	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	CDS	10348621	10348707	0.49	-	0	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	exon	10348621	10348707	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	intron	10348708	10348802	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	CDS	10348803	10348828	0.41	-	2	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	exon	10348803	10348828	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	intron	10348829	10348979	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	CDS	10348980	10349086	0.43	-	1	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	exon	10348980	10349086	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	intron	10349087	10349351	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	CDS	10349352	10349401	0.53	-	0	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	exon	10349352	10349401	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	intron	10349402	10349475	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	CDS	10349476	10349643	1	-	0	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	exon	10349476	10349643	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	intron	10349644	10349732	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	CDS	10349733	10349795	0.89	-	0	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	exon	10349733	10349795	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	intron	10349796	10349894	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	CDS	10349895	10349935	0.79	-	2	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	exon	10349895	10349935	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	intron	10349936	10350022	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	CDS	10350023	10350209	0.78	-	0	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	exon	10350023	10350209	.	-	.	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
Ledus.S1	AUGUSTUS	start_codon	10350207	10350209	.	-	0	transcript_id "Ledus.S1G106300.t1"; gene_id "Ledus.S1G106300"
# This transcript jg3285.t2 is derived from g720.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3286.t1 is derived from g721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7248972	7250818	.	-	.	Ledus.S1G070700
Ledus.S1	AUGUSTUS	transcript	7248972	7250818	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	stop_codon	7248969	7248971	.	-	0	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	CDS	7248972	7249114	1	-	2	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	exon	7248972	7249114	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	intron	7249115	7249198	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	CDS	7249199	7249292	1	-	0	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	exon	7249199	7249292	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	intron	7249293	7249393	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	CDS	7249394	7249492	0.97	-	0	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	exon	7249394	7249492	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	intron	7249493	7249567	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	CDS	7249568	7249659	1	-	2	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	exon	7249568	7249659	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	intron	7249660	7249738	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	CDS	7249739	7249806	1	-	1	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	exon	7249739	7249806	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	intron	7249807	7249888	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	CDS	7249889	7249912	1	-	1	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	exon	7249889	7249912	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	intron	7249913	7250026	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	CDS	7250027	7250046	1	-	0	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	exon	7250027	7250046	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	intron	7250047	7250203	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	CDS	7250204	7250264	1	-	1	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	exon	7250204	7250264	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	intron	7250265	7250356	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	CDS	7250357	7250473	1	-	1	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	exon	7250357	7250473	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	intron	7250474	7250567	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	CDS	7250568	7250640	0.99	-	2	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	exon	7250568	7250640	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	intron	7250641	7250757	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	CDS	7250758	7250818	0.86	-	0	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	exon	7250758	7250818	.	-	.	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
Ledus.S1	AUGUSTUS	start_codon	7250816	7250818	.	-	0	transcript_id "Ledus.S1G070700.t1"; gene_id "Ledus.S1G070700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5300.t1 is derived from g2739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23105111	23105584	.	+	.	Ledus.S1G272100
Ledus.S1	AUGUSTUS	transcript	23105111	23105584	.	+	.	transcript_id "Ledus.S1G272100.t1"; gene_id "Ledus.S1G272100"
Ledus.S1	AUGUSTUS	start_codon	23105111	23105113	.	+	0	transcript_id "Ledus.S1G272100.t1"; gene_id "Ledus.S1G272100"
Ledus.S1	AUGUSTUS	CDS	23105111	23105584	0.62	+	0	transcript_id "Ledus.S1G272100.t1"; gene_id "Ledus.S1G272100"
Ledus.S1	AUGUSTUS	exon	23105111	23105584	.	+	.	transcript_id "Ledus.S1G272100.t1"; gene_id "Ledus.S1G272100"
Ledus.S1	AUGUSTUS	stop_codon	23105585	23105587	.	+	0	transcript_id "Ledus.S1G272100.t1"; gene_id "Ledus.S1G272100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5651.t1 is derived from g3090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25577915	25578241	.	+	.	Ledus.S1G307200
Ledus.S1	AUGUSTUS	transcript	25577915	25578241	.	+	.	transcript_id "Ledus.S1G307200.t1"; gene_id "Ledus.S1G307200"
Ledus.S1	AUGUSTUS	start_codon	25577915	25577917	.	+	0	transcript_id "Ledus.S1G307200.t1"; gene_id "Ledus.S1G307200"
Ledus.S1	AUGUSTUS	CDS	25577915	25578241	0.56	+	0	transcript_id "Ledus.S1G307200.t1"; gene_id "Ledus.S1G307200"
Ledus.S1	AUGUSTUS	exon	25577915	25578241	.	+	.	transcript_id "Ledus.S1G307200.t1"; gene_id "Ledus.S1G307200"
Ledus.S1	AUGUSTUS	stop_codon	25578242	25578244	.	+	0	transcript_id "Ledus.S1G307200.t1"; gene_id "Ledus.S1G307200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5924.t1 is derived from g3367.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27865758	27867405	.	+	.	Ledus.S1G334500
Ledus.S1	AUGUSTUS	transcript	27865758	27867107	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	start_codon	27865758	27865760	.	+	0	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27865758	27865841	0.97	+	0	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27865758	27865841	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	intron	27865842	27866087	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27866088	27866119	1	+	0	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27866088	27866119	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	intron	27866120	27866203	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27866204	27866301	1	+	1	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27866204	27866301	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	intron	27866302	27866373	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27866374	27866456	1	+	2	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27866374	27866456	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	intron	27866457	27866535	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27866536	27866613	1	+	0	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27866536	27866613	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	intron	27866614	27866692	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27866693	27866855	1	+	0	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27866693	27866855	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	intron	27866856	27867099	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27867100	27867107	1	+	2	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27867100	27867107	.	+	.	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	stop_codon	27867108	27867110	.	+	0	transcript_id "Ledus.S1G334500.t1"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	transcript	27865758	27867405	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	start_codon	27865758	27865760	.	+	0	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27865758	27865841	0.97	+	0	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27865758	27865841	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	intron	27865842	27866087	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27866088	27866119	1	+	0	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27866088	27866119	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	intron	27866120	27866203	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27866204	27866301	1	+	1	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27866204	27866301	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	intron	27866302	27866373	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27866374	27866456	1	+	2	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27866374	27866456	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	intron	27866457	27866535	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27866536	27866613	1	+	0	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27866536	27866613	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	intron	27866614	27866692	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27866693	27866860	1	+	0	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27866693	27866860	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	intron	27866861	27867099	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	CDS	27867100	27867405	1	+	0	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	exon	27867100	27867405	.	+	.	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
Ledus.S1	AUGUSTUS	stop_codon	27867406	27867408	.	+	0	transcript_id "Ledus.S1G334500.t2"; gene_id "Ledus.S1G334500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6449.t1 is derived from g3892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31291454	31292954	.	-	.	Ledus.S1G387000
Ledus.S1	AUGUSTUS	transcript	31291454	31292954	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	stop_codon	31291451	31291453	.	-	0	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	CDS	31291454	31291568	1	-	1	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	exon	31291454	31291568	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	intron	31291569	31291649	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	CDS	31291650	31291762	1	-	0	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	exon	31291650	31291762	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	intron	31291763	31291866	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	CDS	31291867	31291917	1	-	0	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	exon	31291867	31291917	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	intron	31291918	31292001	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	CDS	31292002	31292045	0.66	-	2	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	exon	31292002	31292045	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	intron	31292046	31292162	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	CDS	31292163	31292241	0.66	-	0	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	exon	31292163	31292241	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	intron	31292242	31292417	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	CDS	31292418	31292458	1	-	2	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	exon	31292418	31292458	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	intron	31292459	31292579	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	CDS	31292580	31292679	1	-	0	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	exon	31292580	31292679	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	intron	31292680	31292894	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	CDS	31292895	31292954	0.88	-	0	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	exon	31292895	31292954	.	-	.	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
Ledus.S1	AUGUSTUS	start_codon	31292952	31292954	.	-	0	transcript_id "Ledus.S1G387000.t1"; gene_id "Ledus.S1G387000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3204.t1 is derived from g639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6808106	6810382	.	+	.	Ledus.S1G062500
Ledus.S1	AUGUSTUS	transcript	6808106	6810382	.	+	.	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	start_codon	6808106	6808108	.	+	0	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	CDS	6808106	6808669	0.63	+	0	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	exon	6808106	6808669	.	+	.	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	intron	6808670	6808804	.	+	.	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	CDS	6808805	6809054	0.92	+	0	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	exon	6808805	6809054	.	+	.	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	intron	6809055	6809134	.	+	.	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	CDS	6809135	6809280	0.7	+	2	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	exon	6809135	6809280	.	+	.	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	intron	6809281	6809494	.	+	.	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	CDS	6809495	6809683	0.61	+	0	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	exon	6809495	6809683	.	+	.	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	intron	6809684	6809792	.	+	.	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	CDS	6809793	6810014	0.66	+	0	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	exon	6809793	6810014	.	+	.	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	intron	6810015	6810085	.	+	.	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	CDS	6810086	6810382	1	+	0	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	exon	6810086	6810382	.	+	.	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
Ledus.S1	AUGUSTUS	stop_codon	6810383	6810385	.	+	0	transcript_id "Ledus.S1G062500.t1"; gene_id "Ledus.S1G062500"
# This transcript jg4177.t2 is derived from g1613.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4178.t1 is derived from g1614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15209434	15211545	.	+	.	Ledus.S1G159900
Ledus.S1	AUGUSTUS	transcript	15209434	15211545	.	+	.	transcript_id "Ledus.S1G159900.t1"; gene_id "Ledus.S1G159900"
Ledus.S1	AUGUSTUS	start_codon	15209434	15209436	.	+	0	transcript_id "Ledus.S1G159900.t1"; gene_id "Ledus.S1G159900"
Ledus.S1	AUGUSTUS	CDS	15209434	15211005	0.98	+	0	transcript_id "Ledus.S1G159900.t1"; gene_id "Ledus.S1G159900"
Ledus.S1	AUGUSTUS	exon	15209434	15211005	.	+	.	transcript_id "Ledus.S1G159900.t1"; gene_id "Ledus.S1G159900"
Ledus.S1	AUGUSTUS	intron	15211006	15211095	.	+	.	transcript_id "Ledus.S1G159900.t1"; gene_id "Ledus.S1G159900"
Ledus.S1	AUGUSTUS	CDS	15211096	15211545	0.97	+	0	transcript_id "Ledus.S1G159900.t1"; gene_id "Ledus.S1G159900"
Ledus.S1	AUGUSTUS	exon	15211096	15211545	.	+	.	transcript_id "Ledus.S1G159900.t1"; gene_id "Ledus.S1G159900"
Ledus.S1	AUGUSTUS	stop_codon	15211546	15211548	.	+	0	transcript_id "Ledus.S1G159900.t1"; gene_id "Ledus.S1G159900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4567.t1 is derived from g2004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17750414	17751706	.	-	.	Ledus.S1G198800
Ledus.S1	AUGUSTUS	transcript	17750414	17751706	.	-	.	transcript_id "Ledus.S1G198800.t1"; gene_id "Ledus.S1G198800"
Ledus.S1	AUGUSTUS	stop_codon	17750411	17750413	.	-	0	transcript_id "Ledus.S1G198800.t1"; gene_id "Ledus.S1G198800"
Ledus.S1	AUGUSTUS	CDS	17750414	17751706	1	-	0	transcript_id "Ledus.S1G198800.t1"; gene_id "Ledus.S1G198800"
Ledus.S1	AUGUSTUS	exon	17750414	17751706	.	-	.	transcript_id "Ledus.S1G198800.t1"; gene_id "Ledus.S1G198800"
Ledus.S1	AUGUSTUS	start_codon	17751704	17751706	.	-	0	transcript_id "Ledus.S1G198800.t1"; gene_id "Ledus.S1G198800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2162.t1 is derived from g9025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15422201	15422464	.	-	.	Ledus.S2G204400
Ledus.S2	AUGUSTUS	transcript	15422201	15422464	.	-	.	transcript_id "Ledus.S2G204400.t1"; gene_id "Ledus.S2G204400"
Ledus.S2	AUGUSTUS	stop_codon	15422198	15422200	.	-	0	transcript_id "Ledus.S2G204400.t1"; gene_id "Ledus.S2G204400"
Ledus.S2	AUGUSTUS	CDS	15422201	15422464	0.77	-	0	transcript_id "Ledus.S2G204400.t1"; gene_id "Ledus.S2G204400"
Ledus.S2	AUGUSTUS	exon	15422201	15422464	.	-	.	transcript_id "Ledus.S2G204400.t1"; gene_id "Ledus.S2G204400"
Ledus.S2	AUGUSTUS	start_codon	15422462	15422464	.	-	0	transcript_id "Ledus.S2G204400.t1"; gene_id "Ledus.S2G204400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7202.t1 is derived from g6733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2096576	2102062	.	-	.	Ledus.C7G026300
Ledus.C7	AUGUSTUS	transcript	2096576	2102062	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	stop_codon	2096573	2096575	.	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2096576	2097283	0.73	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2096576	2097283	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2097284	2097381	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2097382	2097423	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2097382	2097423	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2097424	2097545	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2097546	2097599	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2097546	2097599	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2097600	2097690	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2097691	2097754	1	-	1	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2097691	2097754	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2097755	2097840	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2097841	2097935	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2097841	2097935	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2097936	2098028	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2098029	2098136	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2098029	2098136	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2098137	2098214	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2098215	2098288	1	-	2	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2098215	2098288	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2098289	2098390	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2098391	2098463	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2098391	2098463	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2098464	2098643	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2098644	2098691	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2098644	2098691	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2098692	2098791	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2098792	2098975	1	-	1	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2098792	2098975	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2098976	2099099	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2099100	2099278	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2099100	2099278	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2099279	2099392	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2099393	2099485	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2099393	2099485	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2099486	2099580	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2099581	2099694	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2099581	2099694	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2099695	2099827	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2099828	2099902	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2099828	2099902	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2099903	2100028	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2100029	2100289	0.99	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2100029	2100289	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2100290	2100375	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2100376	2100489	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2100376	2100489	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2100490	2100579	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2100580	2100636	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2100580	2100636	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2100637	2100740	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2100741	2100897	1	-	1	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2100741	2100897	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2100898	2100987	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2100988	2101052	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2100988	2101052	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2101053	2101133	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2101134	2101217	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2101134	2101217	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2101218	2101306	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2101307	2101349	1	-	1	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2101307	2101349	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2101350	2101457	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2101458	2101564	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2101458	2101564	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2101565	2101654	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2101655	2101723	1	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2101655	2101723	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	intron	2101724	2101804	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	CDS	2101805	2102062	0.78	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	exon	2101805	2102062	.	-	.	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
Ledus.C7	AUGUSTUS	start_codon	2102060	2102062	.	-	0	transcript_id "Ledus.C7G026300.t1"; gene_id "Ledus.C7G026300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9642.t1 is derived from g10672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8568969	8572212	.	+	.	Ledus.S3G111900
Ledus.S3	AUGUSTUS	transcript	8568969	8572212	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	start_codon	8568969	8568971	.	+	0	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8568969	8568987	1	+	0	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8568969	8568987	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8568988	8569067	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8569068	8569161	0.98	+	2	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8569068	8569161	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8569162	8569273	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8569274	8569598	0.98	+	1	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8569274	8569598	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8569599	8569833	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8569834	8569879	1	+	0	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8569834	8569879	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8569880	8570011	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8570012	8570145	1	+	2	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8570012	8570145	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8570146	8570243	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8570244	8570387	1	+	0	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8570244	8570387	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8570388	8570555	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8570556	8570635	1	+	0	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8570556	8570635	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8570636	8570917	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8570918	8570956	1	+	1	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8570918	8570956	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8570957	8571041	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8571042	8571084	1	+	1	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8571042	8571084	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8571085	8571211	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8571212	8571316	1	+	0	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8571212	8571316	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8571317	8571467	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8571468	8571540	1	+	0	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8571468	8571540	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8571541	8571660	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8571661	8571763	1	+	2	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8571661	8571763	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8571764	8571929	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8571930	8572023	0.73	+	1	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8571930	8572023	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	intron	8572024	8572122	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	CDS	8572123	8572212	0.92	+	0	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	exon	8572123	8572212	.	+	.	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
Ledus.S3	AUGUSTUS	stop_codon	8572213	8572215	.	+	0	transcript_id "Ledus.S3G111900.t1"; gene_id "Ledus.S3G111900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg137.t1 is derived from g6998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	241017	243081	.	-	.	Ledus.S2G001900
Ledus.S2	AUGUSTUS	transcript	241017	243081	.	-	.	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	stop_codon	241014	241016	.	-	0	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	CDS	241017	241207	0.99	-	2	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	exon	241017	241207	.	-	.	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	intron	241208	241363	.	-	.	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	CDS	241364	241712	0.75	-	0	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	exon	241364	241712	.	-	.	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	intron	241713	241870	.	-	.	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	CDS	241871	242629	0.91	-	0	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	exon	241871	242629	.	-	.	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	intron	242630	242799	.	-	.	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	CDS	242800	243081	0.91	-	0	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	exon	242800	243081	.	-	.	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
Ledus.S2	AUGUSTUS	start_codon	243079	243081	.	-	0	transcript_id "Ledus.S2G001900.t1"; gene_id "Ledus.S2G001900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6693.t1 is derived from g4136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33328437	33329429	.	-	.	Ledus.S1G411400
Ledus.S1	AUGUSTUS	transcript	33328437	33329429	.	-	.	transcript_id "Ledus.S1G411400.t1"; gene_id "Ledus.S1G411400"
Ledus.S1	AUGUSTUS	stop_codon	33328434	33328436	.	-	0	transcript_id "Ledus.S1G411400.t1"; gene_id "Ledus.S1G411400"
Ledus.S1	AUGUSTUS	CDS	33328437	33328586	1	-	0	transcript_id "Ledus.S1G411400.t1"; gene_id "Ledus.S1G411400"
Ledus.S1	AUGUSTUS	exon	33328437	33328586	.	-	.	transcript_id "Ledus.S1G411400.t1"; gene_id "Ledus.S1G411400"
Ledus.S1	AUGUSTUS	intron	33328587	33328675	.	-	.	transcript_id "Ledus.S1G411400.t1"; gene_id "Ledus.S1G411400"
Ledus.S1	AUGUSTUS	CDS	33328676	33328832	1	-	1	transcript_id "Ledus.S1G411400.t1"; gene_id "Ledus.S1G411400"
Ledus.S1	AUGUSTUS	exon	33328676	33328832	.	-	.	transcript_id "Ledus.S1G411400.t1"; gene_id "Ledus.S1G411400"
Ledus.S1	AUGUSTUS	intron	33328833	33329181	.	-	.	transcript_id "Ledus.S1G411400.t1"; gene_id "Ledus.S1G411400"
Ledus.S1	AUGUSTUS	CDS	33329182	33329429	0.57	-	0	transcript_id "Ledus.S1G411400.t1"; gene_id "Ledus.S1G411400"
Ledus.S1	AUGUSTUS	exon	33329182	33329429	.	-	.	transcript_id "Ledus.S1G411400.t1"; gene_id "Ledus.S1G411400"
Ledus.S1	AUGUSTUS	start_codon	33329427	33329429	.	-	0	transcript_id "Ledus.S1G411400.t1"; gene_id "Ledus.S1G411400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7265.t1 is derived from g11936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	535017	535355	.	+	.	Ledus.S5G004300
Ledus.S5	AUGUSTUS	transcript	535017	535355	.	+	.	transcript_id "Ledus.S5G004300.t1"; gene_id "Ledus.S5G004300"
Ledus.S5	AUGUSTUS	start_codon	535017	535019	.	+	0	transcript_id "Ledus.S5G004300.t1"; gene_id "Ledus.S5G004300"
Ledus.S5	AUGUSTUS	CDS	535017	535355	0.62	+	0	transcript_id "Ledus.S5G004300.t1"; gene_id "Ledus.S5G004300"
Ledus.S5	AUGUSTUS	exon	535017	535355	.	+	.	transcript_id "Ledus.S5G004300.t1"; gene_id "Ledus.S5G004300"
Ledus.S5	AUGUSTUS	stop_codon	535356	535358	.	+	0	transcript_id "Ledus.S5G004300.t1"; gene_id "Ledus.S5G004300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9663.t1 is derived from g10693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8865900	8867381	.	-	.	Ledus.S3G114000
Ledus.S3	AUGUSTUS	transcript	8865900	8867381	.	-	.	transcript_id "Ledus.S3G114000.t1"; gene_id "Ledus.S3G114000"
Ledus.S3	AUGUSTUS	stop_codon	8865897	8865899	.	-	0	transcript_id "Ledus.S3G114000.t1"; gene_id "Ledus.S3G114000"
Ledus.S3	AUGUSTUS	CDS	8865900	8866288	0.92	-	2	transcript_id "Ledus.S3G114000.t1"; gene_id "Ledus.S3G114000"
Ledus.S3	AUGUSTUS	exon	8865900	8866288	.	-	.	transcript_id "Ledus.S3G114000.t1"; gene_id "Ledus.S3G114000"
Ledus.S3	AUGUSTUS	intron	8866289	8866377	.	-	.	transcript_id "Ledus.S3G114000.t1"; gene_id "Ledus.S3G114000"
Ledus.S3	AUGUSTUS	CDS	8866378	8866824	0.99	-	2	transcript_id "Ledus.S3G114000.t1"; gene_id "Ledus.S3G114000"
Ledus.S3	AUGUSTUS	exon	8866378	8866824	.	-	.	transcript_id "Ledus.S3G114000.t1"; gene_id "Ledus.S3G114000"
Ledus.S3	AUGUSTUS	intron	8866825	8866936	.	-	.	transcript_id "Ledus.S3G114000.t1"; gene_id "Ledus.S3G114000"
Ledus.S3	AUGUSTUS	CDS	8866937	8867381	0.91	-	0	transcript_id "Ledus.S3G114000.t1"; gene_id "Ledus.S3G114000"
Ledus.S3	AUGUSTUS	exon	8866937	8867381	.	-	.	transcript_id "Ledus.S3G114000.t1"; gene_id "Ledus.S3G114000"
Ledus.S3	AUGUSTUS	start_codon	8867379	8867381	.	-	0	transcript_id "Ledus.S3G114000.t1"; gene_id "Ledus.S3G114000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2537.t1 is derived from g9400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18753417	18757218	.	-	.	Ledus.S2G241900
Ledus.S2	AUGUSTUS	transcript	18753417	18757218	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	stop_codon	18753414	18753416	.	-	0	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18753417	18753512	1	-	0	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18753417	18753512	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18753513	18753617	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18753618	18753728	0.99	-	0	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18753618	18753728	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18753729	18753802	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18753803	18753862	1	-	0	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18753803	18753862	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18753863	18753942	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18753943	18754060	1	-	1	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18753943	18754060	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18754061	18754158	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18754159	18754259	1	-	0	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18754159	18754259	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18754260	18754347	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18754348	18754419	1	-	0	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18754348	18754419	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18754420	18754626	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18754627	18754726	1	-	1	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18754627	18754726	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18754727	18754860	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18754861	18754929	1	-	1	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18754861	18754929	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18754930	18755094	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18755095	18755223	1	-	1	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18755095	18755223	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18755224	18755291	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18755292	18755404	1	-	0	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18755292	18755404	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18755405	18755628	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18755629	18755700	1	-	0	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18755629	18755700	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18755701	18755782	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18755783	18755887	1	-	0	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18755783	18755887	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18755888	18756268	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18756269	18756382	1	-	0	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18756269	18756382	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18756383	18756578	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18756579	18756673	1	-	2	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18756579	18756673	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18756674	18756769	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18756770	18756876	1	-	1	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18756770	18756876	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18756877	18757015	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18757016	18757037	1	-	2	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18757016	18757037	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	intron	18757038	18757175	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	CDS	18757176	18757218	0.9	-	0	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	exon	18757176	18757218	.	-	.	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
Ledus.S2	AUGUSTUS	start_codon	18757216	18757218	.	-	0	transcript_id "Ledus.S2G241900.t1"; gene_id "Ledus.S2G241900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6688.t1 is derived from g4131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33236292	33236801	.	+	.	Ledus.S1G410900
Ledus.S1	AUGUSTUS	transcript	33236292	33236801	.	+	.	transcript_id "Ledus.S1G410900.t1"; gene_id "Ledus.S1G410900"
Ledus.S1	AUGUSTUS	start_codon	33236292	33236294	.	+	0	transcript_id "Ledus.S1G410900.t1"; gene_id "Ledus.S1G410900"
Ledus.S1	AUGUSTUS	CDS	33236292	33236801	0.77	+	0	transcript_id "Ledus.S1G410900.t1"; gene_id "Ledus.S1G410900"
Ledus.S1	AUGUSTUS	exon	33236292	33236801	.	+	.	transcript_id "Ledus.S1G410900.t1"; gene_id "Ledus.S1G410900"
Ledus.S1	AUGUSTUS	stop_codon	33236802	33236804	.	+	0	transcript_id "Ledus.S1G410900.t1"; gene_id "Ledus.S1G410900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7210.t1 is derived from g6741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2194789	2196084	.	-	.	Ledus.C7G027100
Ledus.C7	AUGUSTUS	transcript	2194789	2196084	.	-	.	transcript_id "Ledus.C7G027100.t1"; gene_id "Ledus.C7G027100"
Ledus.C7	AUGUSTUS	stop_codon	2194786	2194788	.	-	0	transcript_id "Ledus.C7G027100.t1"; gene_id "Ledus.C7G027100"
Ledus.C7	AUGUSTUS	CDS	2194789	2196084	0.96	-	0	transcript_id "Ledus.C7G027100.t1"; gene_id "Ledus.C7G027100"
Ledus.C7	AUGUSTUS	exon	2194789	2196084	.	-	.	transcript_id "Ledus.C7G027100.t1"; gene_id "Ledus.C7G027100"
Ledus.C7	AUGUSTUS	start_codon	2196082	2196084	.	-	0	transcript_id "Ledus.C7G027100.t1"; gene_id "Ledus.C7G027100"
# This transcript jg889.t2 is derived from g7750.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg890.t1 is derived from g7751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5981478	5982109	.	+	.	Ledus.S2G077200
Ledus.S2	AUGUSTUS	transcript	5981478	5982109	.	+	.	transcript_id "Ledus.S2G077200.t1"; gene_id "Ledus.S2G077200"
Ledus.S2	AUGUSTUS	start_codon	5981478	5981480	.	+	0	transcript_id "Ledus.S2G077200.t1"; gene_id "Ledus.S2G077200"
Ledus.S2	AUGUSTUS	CDS	5981478	5981619	0.46	+	0	transcript_id "Ledus.S2G077200.t1"; gene_id "Ledus.S2G077200"
Ledus.S2	AUGUSTUS	exon	5981478	5981619	.	+	.	transcript_id "Ledus.S2G077200.t1"; gene_id "Ledus.S2G077200"
Ledus.S2	AUGUSTUS	intron	5981620	5981939	.	+	.	transcript_id "Ledus.S2G077200.t1"; gene_id "Ledus.S2G077200"
Ledus.S2	AUGUSTUS	CDS	5981940	5982109	0.53	+	2	transcript_id "Ledus.S2G077200.t1"; gene_id "Ledus.S2G077200"
Ledus.S2	AUGUSTUS	exon	5981940	5982109	.	+	.	transcript_id "Ledus.S2G077200.t1"; gene_id "Ledus.S2G077200"
Ledus.S2	AUGUSTUS	stop_codon	5982110	5982112	.	+	0	transcript_id "Ledus.S2G077200.t1"; gene_id "Ledus.S2G077200"
# This transcript jg2764.t2 is derived from g198.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2765.t1 is derived from g199.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3387031	3390878	.	+	.	Ledus.S1G018600
Ledus.S1	AUGUSTUS	transcript	3387031	3390878	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	start_codon	3387031	3387033	.	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3387031	3387186	0.99	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3387031	3387186	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3387187	3387431	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3387432	3387595	1	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3387432	3387595	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3387596	3387672	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3387673	3387787	0.98	+	1	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3387673	3387787	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3387788	3387908	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3387909	3387986	0.62	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3387909	3387986	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3387987	3388090	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3388091	3388159	1	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3388091	3388159	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3388160	3388246	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3388247	3388325	1	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3388247	3388325	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3388326	3388423	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3388424	3388500	1	+	2	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3388424	3388500	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3388501	3388588	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3388589	3388684	1	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3388589	3388684	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3388685	3388774	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3388775	3388919	1	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3388775	3388919	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3388920	3388999	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3389000	3389143	0.95	+	2	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3389000	3389143	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3389144	3389262	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3389263	3389327	1	+	2	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3389263	3389327	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3389328	3389432	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3389433	3389756	1	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3389433	3389756	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3389757	3389854	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3389855	3389980	1	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3389855	3389980	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3389981	3390061	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3390062	3390163	1	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3390062	3390163	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3390164	3390264	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3390265	3390411	1	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3390265	3390411	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3390412	3390495	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3390496	3390594	1	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3390496	3390594	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3390595	3390687	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3390688	3390775	1	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3390688	3390775	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	intron	3390776	3390849	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	CDS	3390850	3390878	0.82	+	2	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	exon	3390850	3390878	.	+	.	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
Ledus.S1	AUGUSTUS	stop_codon	3390879	3390881	.	+	0	transcript_id "Ledus.S1G018600.t1"; gene_id "Ledus.S1G018600"
# This transcript jg596.t2 is derived from g7457.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg597.t1 is derived from g7458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3557031	3557765	.	-	.	Ledus.S2G047900
Ledus.S2	AUGUSTUS	transcript	3557031	3557765	.	-	.	transcript_id "Ledus.S2G047900.t1"; gene_id "Ledus.S2G047900"
Ledus.S2	AUGUSTUS	stop_codon	3557028	3557030	.	-	0	transcript_id "Ledus.S2G047900.t1"; gene_id "Ledus.S2G047900"
Ledus.S2	AUGUSTUS	CDS	3557031	3557765	0.99	-	0	transcript_id "Ledus.S2G047900.t1"; gene_id "Ledus.S2G047900"
Ledus.S2	AUGUSTUS	exon	3557031	3557765	.	-	.	transcript_id "Ledus.S2G047900.t1"; gene_id "Ledus.S2G047900"
Ledus.S2	AUGUSTUS	start_codon	3557763	3557765	.	-	0	transcript_id "Ledus.S2G047900.t1"; gene_id "Ledus.S2G047900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg563.t1 is derived from g7424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3359975	3361089	.	-	.	Ledus.S2G044500
Ledus.S2	AUGUSTUS	transcript	3359975	3361089	.	-	.	transcript_id "Ledus.S2G044500.t1"; gene_id "Ledus.S2G044500"
Ledus.S2	AUGUSTUS	stop_codon	3359972	3359974	.	-	0	transcript_id "Ledus.S2G044500.t1"; gene_id "Ledus.S2G044500"
Ledus.S2	AUGUSTUS	CDS	3359975	3360687	0.64	-	2	transcript_id "Ledus.S2G044500.t1"; gene_id "Ledus.S2G044500"
Ledus.S2	AUGUSTUS	exon	3359975	3360687	.	-	.	transcript_id "Ledus.S2G044500.t1"; gene_id "Ledus.S2G044500"
Ledus.S2	AUGUSTUS	intron	3360688	3360779	.	-	.	transcript_id "Ledus.S2G044500.t1"; gene_id "Ledus.S2G044500"
Ledus.S2	AUGUSTUS	CDS	3360780	3361089	0.83	-	0	transcript_id "Ledus.S2G044500.t1"; gene_id "Ledus.S2G044500"
Ledus.S2	AUGUSTUS	exon	3360780	3361089	.	-	.	transcript_id "Ledus.S2G044500.t1"; gene_id "Ledus.S2G044500"
Ledus.S2	AUGUSTUS	start_codon	3361087	3361089	.	-	0	transcript_id "Ledus.S2G044500.t1"; gene_id "Ledus.S2G044500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3149.t1 is derived from g584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6348300	6349561	.	-	.	Ledus.S1G057000
Ledus.S1	AUGUSTUS	transcript	6348300	6349561	.	-	.	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	stop_codon	6348297	6348299	.	-	0	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	CDS	6348300	6348362	0.99	-	0	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	exon	6348300	6348362	.	-	.	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	intron	6348363	6348447	.	-	.	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	CDS	6348448	6348582	1	-	0	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	exon	6348448	6348582	.	-	.	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	intron	6348583	6348682	.	-	.	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	CDS	6348683	6348739	1	-	0	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	exon	6348683	6348739	.	-	.	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	intron	6348740	6348906	.	-	.	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	CDS	6348907	6349041	1	-	0	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	exon	6348907	6349041	.	-	.	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	intron	6349042	6349255	.	-	.	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	CDS	6349256	6349561	0.59	-	0	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	exon	6349256	6349561	.	-	.	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
Ledus.S1	AUGUSTUS	start_codon	6349559	6349561	.	-	0	transcript_id "Ledus.S1G057000.t1"; gene_id "Ledus.S1G057000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11180.t1 is derived from g4798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2467202	2469126	.	-	.	Ledus.S4G033600
Ledus.S4	AUGUSTUS	transcript	2467202	2469126	.	-	.	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	stop_codon	2467199	2467201	.	-	0	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	CDS	2467202	2467389	1	-	2	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	exon	2467202	2467389	.	-	.	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	intron	2467390	2467478	.	-	.	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	CDS	2467479	2467828	0.97	-	1	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	exon	2467479	2467828	.	-	.	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	intron	2467829	2467955	.	-	.	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	CDS	2467956	2468248	0.97	-	0	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	exon	2467956	2468248	.	-	.	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	intron	2468249	2468329	.	-	.	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	CDS	2468330	2468512	0.97	-	0	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	exon	2468330	2468512	.	-	.	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	intron	2468513	2468579	.	-	.	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	CDS	2468580	2468637	0.87	-	1	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	exon	2468580	2468637	.	-	.	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	intron	2468638	2468746	.	-	.	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	CDS	2468747	2469126	0.84	-	0	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	exon	2468747	2469126	.	-	.	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
Ledus.S4	AUGUSTUS	start_codon	2469124	2469126	.	-	0	transcript_id "Ledus.S4G033600.t1"; gene_id "Ledus.S4G033600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3561.t1 is derived from g997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9602390	9603173	.	-	.	Ledus.S1G098200
Ledus.S1	AUGUSTUS	transcript	9602390	9603173	.	-	.	transcript_id "Ledus.S1G098200.t1"; gene_id "Ledus.S1G098200"
Ledus.S1	AUGUSTUS	stop_codon	9602387	9602389	.	-	0	transcript_id "Ledus.S1G098200.t1"; gene_id "Ledus.S1G098200"
Ledus.S1	AUGUSTUS	CDS	9602390	9602748	0.55	-	2	transcript_id "Ledus.S1G098200.t1"; gene_id "Ledus.S1G098200"
Ledus.S1	AUGUSTUS	exon	9602390	9602748	.	-	.	transcript_id "Ledus.S1G098200.t1"; gene_id "Ledus.S1G098200"
Ledus.S1	AUGUSTUS	intron	9602749	9603019	.	-	.	transcript_id "Ledus.S1G098200.t1"; gene_id "Ledus.S1G098200"
Ledus.S1	AUGUSTUS	CDS	9603020	9603173	0.25	-	0	transcript_id "Ledus.S1G098200.t1"; gene_id "Ledus.S1G098200"
Ledus.S1	AUGUSTUS	exon	9603020	9603173	.	-	.	transcript_id "Ledus.S1G098200.t1"; gene_id "Ledus.S1G098200"
Ledus.S1	AUGUSTUS	start_codon	9603171	9603173	.	-	0	transcript_id "Ledus.S1G098200.t1"; gene_id "Ledus.S1G098200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg693.t1 is derived from g7554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4211572	4213801	.	+	.	Ledus.S2G057500
Ledus.S2	AUGUSTUS	transcript	4211572	4213801	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	start_codon	4211572	4211574	.	+	0	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	CDS	4211572	4211686	0.81	+	0	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	exon	4211572	4211686	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	intron	4211687	4211822	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	CDS	4211823	4211894	1	+	2	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	exon	4211823	4211894	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	intron	4211895	4212026	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	CDS	4212027	4212205	1	+	2	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	exon	4212027	4212205	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	intron	4212206	4212318	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	CDS	4212319	4212378	1	+	0	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	exon	4212319	4212378	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	intron	4212379	4212471	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	CDS	4212472	4212543	1	+	0	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	exon	4212472	4212543	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	intron	4212544	4212642	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	CDS	4212643	4212843	0.8	+	0	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	exon	4212643	4212843	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	intron	4212844	4212957	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	CDS	4212958	4213053	0.97	+	0	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	exon	4212958	4213053	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	intron	4213054	4213148	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	CDS	4213149	4213236	1	+	0	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	exon	4213149	4213236	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	intron	4213237	4213409	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	CDS	4213410	4213518	1	+	2	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	exon	4213410	4213518	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	intron	4213519	4213632	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	CDS	4213633	4213801	0.99	+	1	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	exon	4213633	4213801	.	+	.	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
Ledus.S2	AUGUSTUS	stop_codon	4213802	4213804	.	+	0	transcript_id "Ledus.S2G057500.t1"; gene_id "Ledus.S2G057500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3794.t1 is derived from g1230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12254096	12260672	.	+	.	Ledus.S1G121500
Ledus.S1	AUGUSTUS	transcript	12254096	12260672	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	start_codon	12254096	12254098	.	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12254096	12254318	0.81	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12254096	12254318	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12254319	12255255	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12255256	12255410	1	+	2	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12255256	12255410	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12255411	12255684	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12255685	12255857	1	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12255685	12255857	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12255858	12256071	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12256072	12256192	1	+	1	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12256072	12256192	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12256193	12256366	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12256367	12256441	1	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12256367	12256441	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12256442	12256942	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12256943	12257037	1	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12256943	12257037	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12257038	12257209	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12257210	12257285	1	+	1	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12257210	12257285	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12257286	12257726	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12257727	12257834	1	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12257727	12257834	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12257835	12257919	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12257920	12258048	1	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12257920	12258048	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12258049	12258245	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12258246	12258314	1	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12258246	12258314	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12258315	12258463	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12258464	12258505	0.72	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12258464	12258505	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12258506	12258595	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12258596	12258719	1	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12258596	12258719	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12258720	12258888	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12258889	12259031	1	+	2	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12258889	12259031	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12259032	12259126	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12259127	12259190	1	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12259127	12259190	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12259191	12259296	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12259297	12259376	1	+	2	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12259297	12259376	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12259377	12259655	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12259656	12259720	1	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12259656	12259720	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12259721	12259818	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12259819	12259936	1	+	1	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12259819	12259936	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12259937	12260061	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12260062	12260186	0.96	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12260062	12260186	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12260187	12260358	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12260359	12260444	0.4	+	1	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12260359	12260444	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	intron	12260445	12260601	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	CDS	12260602	12260672	0.74	+	2	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	exon	12260602	12260672	.	+	.	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
Ledus.S1	AUGUSTUS	stop_codon	12260673	12260675	.	+	0	transcript_id "Ledus.S1G121500.t1"; gene_id "Ledus.S1G121500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3787.t1 is derived from g1223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12150857	12153735	.	+	.	Ledus.S1G120800
Ledus.S1	AUGUSTUS	transcript	12150857	12153735	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	start_codon	12150857	12150859	.	+	0	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12150857	12150951	0.82	+	0	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12150857	12150951	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	intron	12150952	12151028	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12151029	12151256	1	+	1	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12151029	12151256	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	intron	12151257	12151346	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12151347	12151458	1	+	1	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12151347	12151458	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	intron	12151459	12151557	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12151558	12151620	1	+	0	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12151558	12151620	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	intron	12151621	12151759	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12151760	12151898	1	+	0	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12151760	12151898	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	intron	12151899	12151993	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12151994	12152049	1	+	2	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12151994	12152049	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	intron	12152050	12152154	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12152155	12152228	1	+	0	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12152155	12152228	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	intron	12152229	12152354	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12152355	12152502	1	+	1	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12152355	12152502	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	intron	12152503	12152673	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12152674	12152847	1	+	0	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12152674	12152847	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	intron	12152848	12152959	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12152960	12153047	1	+	0	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12152960	12153047	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	intron	12153048	12153177	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12153178	12153333	1	+	2	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12153178	12153333	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	intron	12153334	12153508	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12153509	12153605	1	+	2	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12153509	12153605	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	intron	12153606	12153734	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	CDS	12153735	12153735	1	+	1	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	exon	12153735	12153735	.	+	.	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
Ledus.S1	AUGUSTUS	stop_codon	12153736	12153738	.	+	0	transcript_id "Ledus.S1G120800.t1"; gene_id "Ledus.S1G120800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2152.t1 is derived from g9015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15305370	15310940	.	-	.	Ledus.S2G203400
Ledus.S2	AUGUSTUS	transcript	15305370	15310940	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	stop_codon	15305367	15305369	.	-	0	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	CDS	15305370	15305960	1	-	0	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	exon	15305370	15305960	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	intron	15305961	15306074	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	CDS	15306075	15306507	0.99	-	1	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	exon	15306075	15306507	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	intron	15306508	15306628	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	CDS	15306629	15307494	0.97	-	0	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	exon	15306629	15307494	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	intron	15307495	15307629	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	CDS	15307630	15308424	1	-	0	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	exon	15307630	15308424	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	intron	15308425	15308533	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	CDS	15308534	15308751	1	-	2	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	exon	15308534	15308751	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	intron	15308752	15309283	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	CDS	15309284	15309681	1	-	1	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	exon	15309284	15309681	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	intron	15309682	15310692	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	CDS	15310693	15310769	1	-	0	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	exon	15310693	15310769	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	intron	15310770	15310913	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	CDS	15310914	15310940	1	-	0	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	exon	15310914	15310940	.	-	.	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
Ledus.S2	AUGUSTUS	start_codon	15310938	15310940	.	-	0	transcript_id "Ledus.S2G203400.t1"; gene_id "Ledus.S2G203400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10561.t1 is derived from g11591.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16150702	16152034	.	+	.	Ledus.S3G203800
Ledus.S3	AUGUSTUS	transcript	16150702	16152034	.	+	.	transcript_id "Ledus.S3G203800.t1"; gene_id "Ledus.S3G203800"
Ledus.S3	AUGUSTUS	start_codon	16150702	16150704	.	+	0	transcript_id "Ledus.S3G203800.t1"; gene_id "Ledus.S3G203800"
Ledus.S3	AUGUSTUS	CDS	16150702	16151022	0.97	+	0	transcript_id "Ledus.S3G203800.t1"; gene_id "Ledus.S3G203800"
Ledus.S3	AUGUSTUS	exon	16150702	16151022	.	+	.	transcript_id "Ledus.S3G203800.t1"; gene_id "Ledus.S3G203800"
Ledus.S3	AUGUSTUS	intron	16151023	16151110	.	+	.	transcript_id "Ledus.S3G203800.t1"; gene_id "Ledus.S3G203800"
Ledus.S3	AUGUSTUS	CDS	16151111	16152034	1	+	0	transcript_id "Ledus.S3G203800.t1"; gene_id "Ledus.S3G203800"
Ledus.S3	AUGUSTUS	exon	16151111	16152034	.	+	.	transcript_id "Ledus.S3G203800.t1"; gene_id "Ledus.S3G203800"
Ledus.S3	AUGUSTUS	stop_codon	16152035	16152037	.	+	0	transcript_id "Ledus.S3G203800.t1"; gene_id "Ledus.S3G203800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4455.t1 is derived from g1891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17175614	17178038	.	+	.	Ledus.S1G187600
Ledus.S1	AUGUSTUS	transcript	17175614	17178038	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	start_codon	17175614	17175616	.	+	0	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	CDS	17175614	17175711	0.75	+	0	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	exon	17175614	17175711	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	intron	17175712	17175913	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	CDS	17175914	17176054	0.9	+	1	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	exon	17175914	17176054	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	intron	17176055	17176185	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	CDS	17176186	17176391	1	+	1	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	exon	17176186	17176391	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	intron	17176392	17176473	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	CDS	17176474	17176807	1	+	2	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	exon	17176474	17176807	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	intron	17176808	17176905	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	CDS	17176906	17177113	1	+	1	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	exon	17176906	17177113	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	intron	17177114	17177190	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	CDS	17177191	17177292	0.99	+	0	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	exon	17177191	17177292	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	intron	17177293	17177404	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	CDS	17177405	17177524	1	+	0	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	exon	17177405	17177524	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	intron	17177525	17177609	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	CDS	17177610	17177679	1	+	0	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	exon	17177610	17177679	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	intron	17177680	17177766	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	CDS	17177767	17178038	1	+	2	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	exon	17177767	17178038	.	+	.	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
Ledus.S1	AUGUSTUS	stop_codon	17178039	17178041	.	+	0	transcript_id "Ledus.S1G187600.t1"; gene_id "Ledus.S1G187600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11671.t1 is derived from g5290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5861757	5864296	.	-	.	Ledus.S4G082700
Ledus.S4	AUGUSTUS	transcript	5861757	5864296	.	-	.	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	stop_codon	5861754	5861756	.	-	0	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	CDS	5861757	5862166	0.93	-	2	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	exon	5861757	5862166	.	-	.	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	intron	5862167	5862266	.	-	.	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	CDS	5862267	5862486	0.98	-	0	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	exon	5862267	5862486	.	-	.	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	intron	5862487	5862576	.	-	.	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	CDS	5862577	5863170	0.88	-	0	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	exon	5862577	5863170	.	-	.	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	intron	5863171	5863411	.	-	.	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	CDS	5863412	5863556	0.29	-	1	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	exon	5863412	5863556	.	-	.	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	intron	5863557	5863724	.	-	.	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	CDS	5863725	5864296	0.27	-	0	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	exon	5863725	5864296	.	-	.	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
Ledus.S4	AUGUSTUS	start_codon	5864294	5864296	.	-	0	transcript_id "Ledus.S4G082700.t1"; gene_id "Ledus.S4G082700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8470.t1 is derived from g13142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12059672	12063073	.	-	.	Ledus.S5G124800
Ledus.S5	AUGUSTUS	transcript	12059672	12063073	.	-	.	transcript_id "Ledus.S5G124800.t1"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	stop_codon	12059669	12059671	.	-	0	transcript_id "Ledus.S5G124800.t1"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	CDS	12059672	12062736	0.99	-	2	transcript_id "Ledus.S5G124800.t1"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	exon	12059672	12062736	.	-	.	transcript_id "Ledus.S5G124800.t1"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	intron	12062737	12062820	.	-	.	transcript_id "Ledus.S5G124800.t1"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	CDS	12062821	12062944	1	-	0	transcript_id "Ledus.S5G124800.t1"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	exon	12062821	12062944	.	-	.	transcript_id "Ledus.S5G124800.t1"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	intron	12062945	12063025	.	-	.	transcript_id "Ledus.S5G124800.t1"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	CDS	12063026	12063073	0.99	-	0	transcript_id "Ledus.S5G124800.t1"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	exon	12063026	12063073	.	-	.	transcript_id "Ledus.S5G124800.t1"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	start_codon	12063071	12063073	.	-	0	transcript_id "Ledus.S5G124800.t1"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	transcript	12059672	12063065	.	-	.	transcript_id "Ledus.S5G124800.t2"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	stop_codon	12059669	12059671	.	-	0	transcript_id "Ledus.S5G124800.t2"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	CDS	12059672	12062736	0.88	-	2	transcript_id "Ledus.S5G124800.t2"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	exon	12059672	12062736	.	-	.	transcript_id "Ledus.S5G124800.t2"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	intron	12062737	12063025	.	-	.	transcript_id "Ledus.S5G124800.t2"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	CDS	12063026	12063065	0.87	-	0	transcript_id "Ledus.S5G124800.t2"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	exon	12063026	12063065	.	-	.	transcript_id "Ledus.S5G124800.t2"; gene_id "Ledus.S5G124800"
Ledus.S5	AUGUSTUS	start_codon	12063063	12063065	.	-	0	transcript_id "Ledus.S5G124800.t2"; gene_id "Ledus.S5G124800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7248.t1 is derived from g11919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	317547	318173	.	-	.	Ledus.S5G002600
Ledus.S5	AUGUSTUS	transcript	317547	318173	.	-	.	transcript_id "Ledus.S5G002600.t1"; gene_id "Ledus.S5G002600"
Ledus.S5	AUGUSTUS	stop_codon	317544	317546	.	-	0	transcript_id "Ledus.S5G002600.t1"; gene_id "Ledus.S5G002600"
Ledus.S5	AUGUSTUS	CDS	317547	318173	0.85	-	0	transcript_id "Ledus.S5G002600.t1"; gene_id "Ledus.S5G002600"
Ledus.S5	AUGUSTUS	exon	317547	318173	.	-	.	transcript_id "Ledus.S5G002600.t1"; gene_id "Ledus.S5G002600"
Ledus.S5	AUGUSTUS	start_codon	318171	318173	.	-	0	transcript_id "Ledus.S5G002600.t1"; gene_id "Ledus.S5G002600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg503.t1 is derived from g7364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2954892	2955980	.	+	.	Ledus.S2G038500
Ledus.S2	AUGUSTUS	transcript	2954892	2955980	.	+	.	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	start_codon	2954892	2954894	.	+	0	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	CDS	2954892	2955339	0.38	+	0	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	exon	2954892	2955339	.	+	.	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	intron	2955340	2955425	.	+	.	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	CDS	2955426	2955604	0.51	+	2	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	exon	2955426	2955604	.	+	.	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	intron	2955605	2955691	.	+	.	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	CDS	2955692	2955758	0.52	+	0	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	exon	2955692	2955758	.	+	.	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	intron	2955759	2955900	.	+	.	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	CDS	2955901	2955980	0.88	+	2	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	exon	2955901	2955980	.	+	.	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
Ledus.S2	AUGUSTUS	stop_codon	2955981	2955983	.	+	0	transcript_id "Ledus.S2G038500.t1"; gene_id "Ledus.S2G038500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg49.t1 is derived from g9462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	104529	113083	.	+	.	Ledus.C8G000900
Ledus.C8	AUGUSTUS	transcript	104529	113083	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	start_codon	104529	104531	.	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	104529	106421	0.87	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	104529	106421	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	106422	106519	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	106520	106828	1	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	106520	106828	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	106829	106985	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	106986	107249	1	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	106986	107249	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	107250	107426	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	107427	107828	0.98	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	107427	107828	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	107829	107945	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	107946	108630	1	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	107946	108630	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	108631	108738	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	108739	108803	1	+	2	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	108739	108803	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	108804	109131	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	109132	109274	0.81	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	109132	109274	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	109275	109439	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	109440	109495	1	+	1	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	109440	109495	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	109496	109634	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	109635	110305	0.99	+	2	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	109635	110305	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	110306	110412	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	110413	110612	0.99	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	110413	110612	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	110613	110786	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	110787	111078	0.96	+	1	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	110787	111078	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	111079	111193	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	111194	111472	0.99	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	111194	111472	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	111473	111629	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	111630	111739	1	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	111630	111739	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	111740	111837	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	111838	112153	1	+	1	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	111838	112153	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	112154	112245	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	112246	112719	0.83	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	112246	112719	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	intron	112720	112801	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	CDS	112802	113083	0.98	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	exon	112802	113083	.	+	.	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
Ledus.C8	AUGUSTUS	stop_codon	113084	113086	.	+	0	transcript_id "Ledus.C8G000900.t1"; gene_id "Ledus.C8G000900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12002.t1 is derived from g5621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8407949	8410428	.	+	.	Ledus.S4G115800
Ledus.S4	AUGUSTUS	transcript	8407949	8410428	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	start_codon	8407949	8407951	.	+	0	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	CDS	8407949	8408009	1	+	0	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	exon	8407949	8408009	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	intron	8408010	8408101	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	CDS	8408102	8408343	1	+	2	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	exon	8408102	8408343	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	intron	8408344	8408434	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	CDS	8408435	8408555	1	+	0	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	exon	8408435	8408555	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	intron	8408556	8408654	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	CDS	8408655	8408740	1	+	2	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	exon	8408655	8408740	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	intron	8408741	8408832	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	CDS	8408833	8408880	1	+	0	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	exon	8408833	8408880	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	intron	8408881	8408948	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	CDS	8408949	8409089	1	+	0	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	exon	8408949	8409089	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	intron	8409090	8409183	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	CDS	8409184	8409266	1	+	0	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	exon	8409184	8409266	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	intron	8409267	8409348	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	CDS	8409349	8409431	0.92	+	1	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	exon	8409349	8409431	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	intron	8409432	8409687	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	CDS	8409688	8409720	0.84	+	2	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	exon	8409688	8409720	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	intron	8409721	8410107	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	CDS	8410108	8410260	0.97	+	2	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	exon	8410108	8410260	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	intron	8410261	8410420	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	CDS	8410421	8410428	0.97	+	2	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	exon	8410421	8410428	.	+	.	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
Ledus.S4	AUGUSTUS	stop_codon	8410429	8410431	.	+	0	transcript_id "Ledus.S4G115800.t1"; gene_id "Ledus.S4G115800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3968.t1 is derived from g1404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13808704	13810955	.	-	.	Ledus.S1G138900
Ledus.S1	AUGUSTUS	transcript	13808704	13810955	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	stop_codon	13808701	13808703	.	-	0	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	CDS	13808704	13808907	0.99	-	0	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	exon	13808704	13808907	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	intron	13808908	13809010	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	CDS	13809011	13809097	0.99	-	0	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	exon	13809011	13809097	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	intron	13809098	13809181	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	CDS	13809182	13809274	1	-	0	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	exon	13809182	13809274	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	intron	13809275	13809461	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	CDS	13809462	13809587	1	-	0	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	exon	13809462	13809587	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	intron	13809588	13809682	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	CDS	13809683	13809841	1	-	0	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	exon	13809683	13809841	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	intron	13809842	13809939	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	CDS	13809940	13810017	1	-	0	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	exon	13809940	13810017	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	intron	13810018	13810214	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	CDS	13810215	13810274	1	-	0	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	exon	13810215	13810274	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	intron	13810275	13810363	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	CDS	13810364	13810437	1	-	2	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	exon	13810364	13810437	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	intron	13810438	13810508	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	CDS	13810509	13810548	1	-	0	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	exon	13810509	13810548	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	intron	13810549	13810660	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	CDS	13810661	13810783	1	-	0	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	exon	13810661	13810783	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	intron	13810784	13810874	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	CDS	13810875	13810955	0.98	-	0	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	exon	13810875	13810955	.	-	.	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
Ledus.S1	AUGUSTUS	start_codon	13810953	13810955	.	-	0	transcript_id "Ledus.S1G138900.t1"; gene_id "Ledus.S1G138900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10841.t1 is derived from g6461.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C32	AUGUSTUS	gene	16276	16861	.	+	.	Ledus.C32G000100
Ledus.C32	AUGUSTUS	transcript	16276	16861	.	+	.	transcript_id "Ledus.C32G000100.t1"; gene_id "Ledus.C32G000100"
Ledus.C32	AUGUSTUS	start_codon	16276	16278	.	+	0	transcript_id "Ledus.C32G000100.t1"; gene_id "Ledus.C32G000100"
Ledus.C32	AUGUSTUS	CDS	16276	16516	0.83	+	0	transcript_id "Ledus.C32G000100.t1"; gene_id "Ledus.C32G000100"
Ledus.C32	AUGUSTUS	exon	16276	16516	.	+	.	transcript_id "Ledus.C32G000100.t1"; gene_id "Ledus.C32G000100"
Ledus.C32	AUGUSTUS	intron	16517	16640	.	+	.	transcript_id "Ledus.C32G000100.t1"; gene_id "Ledus.C32G000100"
Ledus.C32	AUGUSTUS	CDS	16641	16861	1	+	2	transcript_id "Ledus.C32G000100.t1"; gene_id "Ledus.C32G000100"
Ledus.C32	AUGUSTUS	exon	16641	16861	.	+	.	transcript_id "Ledus.C32G000100.t1"; gene_id "Ledus.C32G000100"
Ledus.C32	AUGUSTUS	stop_codon	16862	16864	.	+	0	transcript_id "Ledus.C32G000100.t1"; gene_id "Ledus.C32G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12153.t1 is derived from g5772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10031344	10031871	.	+	.	Ledus.S4G130900
Ledus.S4	AUGUSTUS	transcript	10031344	10031871	.	+	.	transcript_id "Ledus.S4G130900.t1"; gene_id "Ledus.S4G130900"
Ledus.S4	AUGUSTUS	start_codon	10031344	10031346	.	+	0	transcript_id "Ledus.S4G130900.t1"; gene_id "Ledus.S4G130900"
Ledus.S4	AUGUSTUS	CDS	10031344	10031871	0.52	+	0	transcript_id "Ledus.S4G130900.t1"; gene_id "Ledus.S4G130900"
Ledus.S4	AUGUSTUS	exon	10031344	10031871	.	+	.	transcript_id "Ledus.S4G130900.t1"; gene_id "Ledus.S4G130900"
Ledus.S4	AUGUSTUS	stop_codon	10031872	10031874	.	+	0	transcript_id "Ledus.S4G130900.t1"; gene_id "Ledus.S4G130900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9738.t1 is derived from g10768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9503235	9505122	.	-	.	Ledus.S3G121500
Ledus.S3	AUGUSTUS	transcript	9503235	9505122	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	stop_codon	9503232	9503234	.	-	0	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	CDS	9503235	9503426	0.94	-	0	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	exon	9503235	9503426	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	intron	9503427	9503519	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	CDS	9503520	9503582	1	-	0	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	exon	9503520	9503582	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	intron	9503583	9503679	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	CDS	9503680	9503835	1	-	0	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	exon	9503680	9503835	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	intron	9503836	9503919	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	CDS	9503920	9504046	1	-	1	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	exon	9503920	9504046	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	intron	9504047	9504210	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	CDS	9504211	9504282	1	-	1	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	exon	9504211	9504282	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	intron	9504283	9504457	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	CDS	9504458	9504845	0.97	-	2	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	exon	9504458	9504845	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	intron	9504846	9504935	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	CDS	9504936	9505122	0.37	-	0	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	exon	9504936	9505122	.	-	.	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
Ledus.S3	AUGUSTUS	start_codon	9505120	9505122	.	-	0	transcript_id "Ledus.S3G121500.t1"; gene_id "Ledus.S3G121500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5543.t1 is derived from g2982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25056296	25056979	.	+	.	Ledus.S1G296400
Ledus.S1	AUGUSTUS	transcript	25056296	25056979	.	+	.	transcript_id "Ledus.S1G296400.t1"; gene_id "Ledus.S1G296400"
Ledus.S1	AUGUSTUS	start_codon	25056296	25056298	.	+	0	transcript_id "Ledus.S1G296400.t1"; gene_id "Ledus.S1G296400"
Ledus.S1	AUGUSTUS	CDS	25056296	25056979	0.83	+	0	transcript_id "Ledus.S1G296400.t1"; gene_id "Ledus.S1G296400"
Ledus.S1	AUGUSTUS	exon	25056296	25056979	.	+	.	transcript_id "Ledus.S1G296400.t1"; gene_id "Ledus.S1G296400"
Ledus.S1	AUGUSTUS	stop_codon	25056980	25056982	.	+	0	transcript_id "Ledus.S1G296400.t1"; gene_id "Ledus.S1G296400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8651.t1 is derived from g9681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1095166	1096360	.	-	.	Ledus.S3G012800
Ledus.S3	AUGUSTUS	transcript	1095166	1096360	.	-	.	transcript_id "Ledus.S3G012800.t1"; gene_id "Ledus.S3G012800"
Ledus.S3	AUGUSTUS	stop_codon	1095163	1095165	.	-	0	transcript_id "Ledus.S3G012800.t1"; gene_id "Ledus.S3G012800"
Ledus.S3	AUGUSTUS	CDS	1095166	1095296	0.62	-	2	transcript_id "Ledus.S3G012800.t1"; gene_id "Ledus.S3G012800"
Ledus.S3	AUGUSTUS	exon	1095166	1095296	.	-	.	transcript_id "Ledus.S3G012800.t1"; gene_id "Ledus.S3G012800"
Ledus.S3	AUGUSTUS	intron	1095297	1095882	.	-	.	transcript_id "Ledus.S3G012800.t1"; gene_id "Ledus.S3G012800"
Ledus.S3	AUGUSTUS	CDS	1095883	1096360	0.41	-	0	transcript_id "Ledus.S3G012800.t1"; gene_id "Ledus.S3G012800"
Ledus.S3	AUGUSTUS	exon	1095883	1096360	.	-	.	transcript_id "Ledus.S3G012800.t1"; gene_id "Ledus.S3G012800"
Ledus.S3	AUGUSTUS	start_codon	1096358	1096360	.	-	0	transcript_id "Ledus.S3G012800.t1"; gene_id "Ledus.S3G012800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1623.t1 is derived from g8484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11468878	11469894	.	-	.	Ledus.S2G150500
Ledus.S2	AUGUSTUS	transcript	11468878	11469894	.	-	.	transcript_id "Ledus.S2G150500.t1"; gene_id "Ledus.S2G150500"
Ledus.S2	AUGUSTUS	stop_codon	11468875	11468877	.	-	0	transcript_id "Ledus.S2G150500.t1"; gene_id "Ledus.S2G150500"
Ledus.S2	AUGUSTUS	CDS	11468878	11469894	0.86	-	0	transcript_id "Ledus.S2G150500.t1"; gene_id "Ledus.S2G150500"
Ledus.S2	AUGUSTUS	exon	11468878	11469894	.	-	.	transcript_id "Ledus.S2G150500.t1"; gene_id "Ledus.S2G150500"
Ledus.S2	AUGUSTUS	start_codon	11469892	11469894	.	-	0	transcript_id "Ledus.S2G150500.t1"; gene_id "Ledus.S2G150500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7870.t1 is derived from g12541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7552975	7555041	.	-	.	Ledus.S5G064800
Ledus.S5	AUGUSTUS	transcript	7552975	7555041	.	-	.	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	stop_codon	7552972	7552974	.	-	0	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	CDS	7552975	7554330	0.98	-	0	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	exon	7552975	7554330	.	-	.	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	intron	7554331	7554445	.	-	.	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	CDS	7554446	7554512	0.72	-	1	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	exon	7554446	7554512	.	-	.	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	intron	7554513	7554680	.	-	.	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	CDS	7554681	7554922	0.9	-	0	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	exon	7554681	7554922	.	-	.	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	intron	7554923	7555002	.	-	.	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	CDS	7555003	7555041	0.62	-	0	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	exon	7555003	7555041	.	-	.	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
Ledus.S5	AUGUSTUS	start_codon	7555039	7555041	.	-	0	transcript_id "Ledus.S5G064800.t1"; gene_id "Ledus.S5G064800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1455.t1 is derived from g8316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10295063	10296264	.	+	.	Ledus.S2G133700
Ledus.S2	AUGUSTUS	transcript	10295063	10296264	.	+	.	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	start_codon	10295063	10295065	.	+	0	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	CDS	10295063	10295153	1	+	0	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	exon	10295063	10295153	.	+	.	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	intron	10295154	10295330	.	+	.	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	CDS	10295331	10295404	1	+	2	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	exon	10295331	10295404	.	+	.	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	intron	10295405	10295491	.	+	.	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	CDS	10295492	10295626	1	+	0	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	exon	10295492	10295626	.	+	.	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	intron	10295627	10295721	.	+	.	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	CDS	10295722	10295835	1	+	0	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	exon	10295722	10295835	.	+	.	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	intron	10295836	10295928	.	+	.	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	CDS	10295929	10296000	0.98	+	0	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	exon	10295929	10296000	.	+	.	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	intron	10296001	10296102	.	+	.	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	CDS	10296103	10296264	0.98	+	0	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	exon	10296103	10296264	.	+	.	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
Ledus.S2	AUGUSTUS	stop_codon	10296265	10296267	.	+	0	transcript_id "Ledus.S2G133700.t1"; gene_id "Ledus.S2G133700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6662.t1 is derived from g4105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32949217	32949530	.	+	.	Ledus.S1G408300
Ledus.S1	AUGUSTUS	transcript	32949217	32949530	.	+	.	transcript_id "Ledus.S1G408300.t1"; gene_id "Ledus.S1G408300"
Ledus.S1	AUGUSTUS	start_codon	32949217	32949219	.	+	0	transcript_id "Ledus.S1G408300.t1"; gene_id "Ledus.S1G408300"
Ledus.S1	AUGUSTUS	CDS	32949217	32949327	0.69	+	0	transcript_id "Ledus.S1G408300.t1"; gene_id "Ledus.S1G408300"
Ledus.S1	AUGUSTUS	exon	32949217	32949327	.	+	.	transcript_id "Ledus.S1G408300.t1"; gene_id "Ledus.S1G408300"
Ledus.S1	AUGUSTUS	intron	32949328	32949440	.	+	.	transcript_id "Ledus.S1G408300.t1"; gene_id "Ledus.S1G408300"
Ledus.S1	AUGUSTUS	CDS	32949441	32949530	0.99	+	0	transcript_id "Ledus.S1G408300.t1"; gene_id "Ledus.S1G408300"
Ledus.S1	AUGUSTUS	exon	32949441	32949530	.	+	.	transcript_id "Ledus.S1G408300.t1"; gene_id "Ledus.S1G408300"
Ledus.S1	AUGUSTUS	stop_codon	32949531	32949533	.	+	0	transcript_id "Ledus.S1G408300.t1"; gene_id "Ledus.S1G408300"
# This transcript jg10868.t2 is derived from g4486.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10869.t1 is derived from g4487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	178113	178837	.	-	.	Ledus.S4G002500
Ledus.S4	AUGUSTUS	transcript	178113	178837	.	-	.	transcript_id "Ledus.S4G002500.t1"; gene_id "Ledus.S4G002500"
Ledus.S4	AUGUSTUS	stop_codon	178110	178112	.	-	0	transcript_id "Ledus.S4G002500.t1"; gene_id "Ledus.S4G002500"
Ledus.S4	AUGUSTUS	CDS	178113	178214	0.78	-	0	transcript_id "Ledus.S4G002500.t1"; gene_id "Ledus.S4G002500"
Ledus.S4	AUGUSTUS	exon	178113	178214	.	-	.	transcript_id "Ledus.S4G002500.t1"; gene_id "Ledus.S4G002500"
Ledus.S4	AUGUSTUS	intron	178215	178386	.	-	.	transcript_id "Ledus.S4G002500.t1"; gene_id "Ledus.S4G002500"
Ledus.S4	AUGUSTUS	CDS	178387	178473	0.73	-	0	transcript_id "Ledus.S4G002500.t1"; gene_id "Ledus.S4G002500"
Ledus.S4	AUGUSTUS	exon	178387	178473	.	-	.	transcript_id "Ledus.S4G002500.t1"; gene_id "Ledus.S4G002500"
Ledus.S4	AUGUSTUS	intron	178474	178693	.	-	.	transcript_id "Ledus.S4G002500.t1"; gene_id "Ledus.S4G002500"
Ledus.S4	AUGUSTUS	CDS	178694	178837	0.64	-	0	transcript_id "Ledus.S4G002500.t1"; gene_id "Ledus.S4G002500"
Ledus.S4	AUGUSTUS	exon	178694	178837	.	-	.	transcript_id "Ledus.S4G002500.t1"; gene_id "Ledus.S4G002500"
Ledus.S4	AUGUSTUS	start_codon	178835	178837	.	-	0	transcript_id "Ledus.S4G002500.t1"; gene_id "Ledus.S4G002500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9488.t1 is derived from g10518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7325040	7326239	.	-	.	Ledus.S3G096500
Ledus.S3	AUGUSTUS	transcript	7325040	7326239	.	-	.	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	stop_codon	7325037	7325039	.	-	0	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	CDS	7325040	7325233	1	-	2	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	exon	7325040	7325233	.	-	.	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	intron	7325234	7325303	.	-	.	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	CDS	7325304	7325528	0.92	-	2	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	exon	7325304	7325528	.	-	.	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	intron	7325529	7325658	.	-	.	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	CDS	7325659	7325804	0.41	-	1	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	exon	7325659	7325804	.	-	.	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	intron	7325805	7326014	.	-	.	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	CDS	7326015	7326100	0.48	-	0	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	exon	7326015	7326100	.	-	.	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	intron	7326101	7326182	.	-	.	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	CDS	7326183	7326239	0.87	-	0	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	exon	7326183	7326239	.	-	.	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
Ledus.S3	AUGUSTUS	start_codon	7326237	7326239	.	-	0	transcript_id "Ledus.S3G096500.t1"; gene_id "Ledus.S3G096500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10828.t1 is derived from g11860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18084543	18084947	.	+	.	Ledus.S3G230500
Ledus.S3	AUGUSTUS	transcript	18084543	18084947	.	+	.	transcript_id "Ledus.S3G230500.t1"; gene_id "Ledus.S3G230500"
Ledus.S3	AUGUSTUS	start_codon	18084543	18084545	.	+	0	transcript_id "Ledus.S3G230500.t1"; gene_id "Ledus.S3G230500"
Ledus.S3	AUGUSTUS	CDS	18084543	18084583	0.97	+	0	transcript_id "Ledus.S3G230500.t1"; gene_id "Ledus.S3G230500"
Ledus.S3	AUGUSTUS	exon	18084543	18084583	.	+	.	transcript_id "Ledus.S3G230500.t1"; gene_id "Ledus.S3G230500"
Ledus.S3	AUGUSTUS	intron	18084584	18084678	.	+	.	transcript_id "Ledus.S3G230500.t1"; gene_id "Ledus.S3G230500"
Ledus.S3	AUGUSTUS	CDS	18084679	18084763	1	+	1	transcript_id "Ledus.S3G230500.t1"; gene_id "Ledus.S3G230500"
Ledus.S3	AUGUSTUS	exon	18084679	18084763	.	+	.	transcript_id "Ledus.S3G230500.t1"; gene_id "Ledus.S3G230500"
Ledus.S3	AUGUSTUS	intron	18084764	18084842	.	+	.	transcript_id "Ledus.S3G230500.t1"; gene_id "Ledus.S3G230500"
Ledus.S3	AUGUSTUS	CDS	18084843	18084947	1	+	0	transcript_id "Ledus.S3G230500.t1"; gene_id "Ledus.S3G230500"
Ledus.S3	AUGUSTUS	exon	18084843	18084947	.	+	.	transcript_id "Ledus.S3G230500.t1"; gene_id "Ledus.S3G230500"
Ledus.S3	AUGUSTUS	stop_codon	18084948	18084950	.	+	0	transcript_id "Ledus.S3G230500.t1"; gene_id "Ledus.S3G230500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg560.t1 is derived from g7421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3356178	3356672	.	+	.	Ledus.S2G044200
Ledus.S2	AUGUSTUS	transcript	3356178	3356672	.	+	.	transcript_id "Ledus.S2G044200.t1"; gene_id "Ledus.S2G044200"
Ledus.S2	AUGUSTUS	start_codon	3356178	3356180	.	+	0	transcript_id "Ledus.S2G044200.t1"; gene_id "Ledus.S2G044200"
Ledus.S2	AUGUSTUS	CDS	3356178	3356326	0.43	+	0	transcript_id "Ledus.S2G044200.t1"; gene_id "Ledus.S2G044200"
Ledus.S2	AUGUSTUS	exon	3356178	3356326	.	+	.	transcript_id "Ledus.S2G044200.t1"; gene_id "Ledus.S2G044200"
Ledus.S2	AUGUSTUS	intron	3356327	3356494	.	+	.	transcript_id "Ledus.S2G044200.t1"; gene_id "Ledus.S2G044200"
Ledus.S2	AUGUSTUS	CDS	3356495	3356672	0.19	+	1	transcript_id "Ledus.S2G044200.t1"; gene_id "Ledus.S2G044200"
Ledus.S2	AUGUSTUS	exon	3356495	3356672	.	+	.	transcript_id "Ledus.S2G044200.t1"; gene_id "Ledus.S2G044200"
Ledus.S2	AUGUSTUS	stop_codon	3356673	3356675	.	+	0	transcript_id "Ledus.S2G044200.t1"; gene_id "Ledus.S2G044200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6138.t1 is derived from g3581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29166472	29168092	.	-	.	Ledus.S1G355900
Ledus.S1	AUGUSTUS	transcript	29166472	29168092	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	stop_codon	29166469	29166471	.	-	0	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	CDS	29166472	29166534	0.98	-	0	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	exon	29166472	29166534	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	intron	29166535	29166664	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	CDS	29166665	29166725	1	-	1	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	exon	29166665	29166725	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	intron	29166726	29166823	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	CDS	29166824	29166915	1	-	0	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	exon	29166824	29166915	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	intron	29166916	29167024	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	CDS	29167025	29167104	1	-	2	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	exon	29167025	29167104	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	intron	29167105	29167189	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	CDS	29167190	29167226	1	-	0	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	exon	29167190	29167226	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	intron	29167227	29167352	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	CDS	29167353	29167412	1	-	0	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	exon	29167353	29167412	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	intron	29167413	29167489	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	CDS	29167490	29167535	1	-	1	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	exon	29167490	29167535	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	intron	29167536	29167633	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	CDS	29167634	29167766	1	-	2	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	exon	29167634	29167766	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	intron	29167767	29167947	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	CDS	29167948	29168092	0.46	-	0	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	exon	29167948	29168092	.	-	.	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
Ledus.S1	AUGUSTUS	start_codon	29168090	29168092	.	-	0	transcript_id "Ledus.S1G355900.t1"; gene_id "Ledus.S1G355900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6868.t1 is derived from g4312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34830160	34832277	.	-	.	Ledus.S1G428900
Ledus.S1	AUGUSTUS	transcript	34830160	34832277	.	-	.	transcript_id "Ledus.S1G428900.t1"; gene_id "Ledus.S1G428900"
Ledus.S1	AUGUSTUS	stop_codon	34830157	34830159	.	-	0	transcript_id "Ledus.S1G428900.t1"; gene_id "Ledus.S1G428900"
Ledus.S1	AUGUSTUS	CDS	34830160	34832277	0.97	-	0	transcript_id "Ledus.S1G428900.t1"; gene_id "Ledus.S1G428900"
Ledus.S1	AUGUSTUS	exon	34830160	34832277	.	-	.	transcript_id "Ledus.S1G428900.t1"; gene_id "Ledus.S1G428900"
Ledus.S1	AUGUSTUS	start_codon	34832275	34832277	.	-	0	transcript_id "Ledus.S1G428900.t1"; gene_id "Ledus.S1G428900"
Ledus.S1	AUGUSTUS	transcript	34830407	34832277	.	-	.	transcript_id "Ledus.S1G428900.t2"; gene_id "Ledus.S1G428900"
Ledus.S1	AUGUSTUS	stop_codon	34830404	34830406	.	-	0	transcript_id "Ledus.S1G428900.t2"; gene_id "Ledus.S1G428900"
Ledus.S1	AUGUSTUS	CDS	34830407	34830418	0.46	-	0	transcript_id "Ledus.S1G428900.t2"; gene_id "Ledus.S1G428900"
Ledus.S1	AUGUSTUS	exon	34830407	34830418	.	-	.	transcript_id "Ledus.S1G428900.t2"; gene_id "Ledus.S1G428900"
Ledus.S1	AUGUSTUS	intron	34830419	34830561	.	-	.	transcript_id "Ledus.S1G428900.t2"; gene_id "Ledus.S1G428900"
Ledus.S1	AUGUSTUS	CDS	34830562	34832277	0.3	-	0	transcript_id "Ledus.S1G428900.t2"; gene_id "Ledus.S1G428900"
Ledus.S1	AUGUSTUS	exon	34830562	34832277	.	-	.	transcript_id "Ledus.S1G428900.t2"; gene_id "Ledus.S1G428900"
Ledus.S1	AUGUSTUS	start_codon	34832275	34832277	.	-	0	transcript_id "Ledus.S1G428900.t2"; gene_id "Ledus.S1G428900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12872.t1 is derived from g4445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	144474	145194	.	-	.	Ledus.C10G001500
Ledus.C10	AUGUSTUS	transcript	144474	145194	.	-	.	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	stop_codon	144471	144473	.	-	0	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	CDS	144474	144531	0.38	-	1	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	exon	144474	144531	.	-	.	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	intron	144532	144608	.	-	.	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	CDS	144609	144691	0.45	-	0	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	exon	144609	144691	.	-	.	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	intron	144692	144814	.	-	.	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	CDS	144815	144903	0.44	-	2	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	exon	144815	144903	.	-	.	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	intron	144904	145043	.	-	.	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	CDS	145044	145194	0.68	-	0	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	exon	145044	145194	.	-	.	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
Ledus.C10	AUGUSTUS	start_codon	145192	145194	.	-	0	transcript_id "Ledus.C10G001500.t1"; gene_id "Ledus.C10G001500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2590.t1 is derived from g23.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	174482	175728	.	+	.	Ledus.S1G001100
Ledus.S1	AUGUSTUS	transcript	174482	175728	.	+	.	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	start_codon	174482	174484	.	+	0	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	CDS	174482	175229	1	+	0	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	exon	174482	175229	.	+	.	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	intron	175230	175320	.	+	.	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	CDS	175321	175394	1	+	2	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	exon	175321	175394	.	+	.	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	intron	175395	175480	.	+	.	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	CDS	175481	175594	1	+	0	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	exon	175481	175594	.	+	.	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	intron	175595	175686	.	+	.	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	CDS	175687	175728	1	+	0	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	exon	175687	175728	.	+	.	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
Ledus.S1	AUGUSTUS	stop_codon	175729	175731	.	+	0	transcript_id "Ledus.S1G001100.t1"; gene_id "Ledus.S1G001100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4476.t1 is derived from g1912.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17245814	17251172	.	-	.	Ledus.S1G189700
Ledus.S1	AUGUSTUS	transcript	17245814	17251172	.	-	.	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	stop_codon	17245811	17245813	.	-	0	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	CDS	17245814	17246355	0.59	-	2	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	exon	17245814	17246355	.	-	.	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	intron	17246356	17246451	.	-	.	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	CDS	17246452	17246730	0.99	-	2	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	exon	17246452	17246730	.	-	.	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	intron	17246731	17246832	.	-	.	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	CDS	17246833	17249445	0.65	-	2	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	exon	17246833	17249445	.	-	.	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	intron	17249446	17249579	.	-	.	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	CDS	17249580	17249798	1	-	2	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	exon	17249580	17249798	.	-	.	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	intron	17249799	17250466	.	-	.	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	CDS	17250467	17251172	0.59	-	0	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	exon	17250467	17251172	.	-	.	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	start_codon	17251170	17251172	.	-	0	transcript_id "Ledus.S1G189700.t1"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	transcript	17245814	17251172	.	-	.	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	stop_codon	17245811	17245813	.	-	0	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	CDS	17245814	17246355	0.46	-	2	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	exon	17245814	17246355	.	-	.	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	intron	17246356	17246451	.	-	.	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	CDS	17246452	17246730	0.98	-	2	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	exon	17246452	17246730	.	-	.	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	intron	17246731	17246832	.	-	.	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	CDS	17246833	17249445	0.55	-	2	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	exon	17246833	17249445	.	-	.	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	intron	17249446	17249579	.	-	.	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	CDS	17249580	17249798	0.89	-	2	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	exon	17249580	17249798	.	-	.	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	intron	17249799	17250628	.	-	.	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	CDS	17250629	17251172	0.18	-	0	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	exon	17250629	17251172	.	-	.	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
Ledus.S1	AUGUSTUS	start_codon	17251170	17251172	.	-	0	transcript_id "Ledus.S1G189700.t2"; gene_id "Ledus.S1G189700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1930.t1 is derived from g8793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13542833	13543444	.	-	.	Ledus.S2G181200
Ledus.S2	AUGUSTUS	transcript	13542833	13543444	.	-	.	transcript_id "Ledus.S2G181200.t1"; gene_id "Ledus.S2G181200"
Ledus.S2	AUGUSTUS	stop_codon	13542830	13542832	.	-	0	transcript_id "Ledus.S2G181200.t1"; gene_id "Ledus.S2G181200"
Ledus.S2	AUGUSTUS	CDS	13542833	13543444	0.89	-	0	transcript_id "Ledus.S2G181200.t1"; gene_id "Ledus.S2G181200"
Ledus.S2	AUGUSTUS	exon	13542833	13543444	.	-	.	transcript_id "Ledus.S2G181200.t1"; gene_id "Ledus.S2G181200"
Ledus.S2	AUGUSTUS	start_codon	13543442	13543444	.	-	0	transcript_id "Ledus.S2G181200.t1"; gene_id "Ledus.S2G181200"
# This transcript jg1808.t2 is derived from g8671.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1808.t3 is derived from g8671.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1808.t4 is derived from g8671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1809.t1 is derived from g8672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12711416	12712210	.	+	.	Ledus.S2G169100
Ledus.S2	AUGUSTUS	transcript	12711416	12712210	.	+	.	transcript_id "Ledus.S2G169100.t1"; gene_id "Ledus.S2G169100"
Ledus.S2	AUGUSTUS	start_codon	12711416	12711418	.	+	0	transcript_id "Ledus.S2G169100.t1"; gene_id "Ledus.S2G169100"
Ledus.S2	AUGUSTUS	CDS	12711416	12712210	1	+	0	transcript_id "Ledus.S2G169100.t1"; gene_id "Ledus.S2G169100"
Ledus.S2	AUGUSTUS	exon	12711416	12712210	.	+	.	transcript_id "Ledus.S2G169100.t1"; gene_id "Ledus.S2G169100"
Ledus.S2	AUGUSTUS	stop_codon	12712211	12712213	.	+	0	transcript_id "Ledus.S2G169100.t1"; gene_id "Ledus.S2G169100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5586.t1 is derived from g3025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25269416	25276631	.	+	.	Ledus.S1G300700
Ledus.S1	AUGUSTUS	transcript	25269416	25276631	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	start_codon	25269416	25269418	.	+	0	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25269416	25270656	0.5	+	0	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25269416	25270656	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	intron	25270657	25270742	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25270743	25271060	1	+	1	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25270743	25271060	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	intron	25271061	25271250	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25271251	25272001	1	+	1	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25271251	25272001	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	intron	25272002	25272080	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25272081	25272373	1	+	0	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25272081	25272373	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	intron	25272374	25272456	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25272457	25272730	1	+	1	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25272457	25272730	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	intron	25272731	25273049	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25273050	25273555	0.97	+	0	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25273050	25273555	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	intron	25273556	25273679	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25273680	25274001	1	+	1	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25273680	25274001	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	intron	25274002	25274120	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25274121	25274475	1	+	0	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25274121	25274475	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	intron	25274476	25274645	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25274646	25275325	1	+	2	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25274646	25275325	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	intron	25275326	25275488	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25275489	25275994	0.59	+	0	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25275489	25275994	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	intron	25275995	25276188	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25276189	25276248	0.62	+	1	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25276189	25276248	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	intron	25276249	25276366	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25276367	25276485	0.59	+	1	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25276367	25276485	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	intron	25276486	25276617	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	CDS	25276618	25276631	0.88	+	2	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	exon	25276618	25276631	.	+	.	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
Ledus.S1	AUGUSTUS	stop_codon	25276632	25276634	.	+	0	transcript_id "Ledus.S1G300700.t1"; gene_id "Ledus.S1G300700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7379.t1 is derived from g12050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1762086	1765133	.	-	.	Ledus.S5G015700
Ledus.S5	AUGUSTUS	transcript	1762086	1765133	.	-	.	transcript_id "Ledus.S5G015700.t1"; gene_id "Ledus.S5G015700"
Ledus.S5	AUGUSTUS	stop_codon	1762083	1762085	.	-	0	transcript_id "Ledus.S5G015700.t1"; gene_id "Ledus.S5G015700"
Ledus.S5	AUGUSTUS	CDS	1762086	1765133	1	-	0	transcript_id "Ledus.S5G015700.t1"; gene_id "Ledus.S5G015700"
Ledus.S5	AUGUSTUS	exon	1762086	1765133	.	-	.	transcript_id "Ledus.S5G015700.t1"; gene_id "Ledus.S5G015700"
Ledus.S5	AUGUSTUS	start_codon	1765131	1765133	.	-	0	transcript_id "Ledus.S5G015700.t1"; gene_id "Ledus.S5G015700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8530.t1 is derived from g9560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	49125	51680	.	+	.	Ledus.S3G000700
Ledus.S3	AUGUSTUS	transcript	49125	51680	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	start_codon	49125	49127	.	+	0	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	CDS	49125	49157	0.87	+	0	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	exon	49125	49157	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	intron	49158	49391	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	CDS	49392	49466	0.89	+	0	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	exon	49392	49466	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	intron	49467	49602	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	CDS	49603	49642	0.69	+	0	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	exon	49603	49642	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	intron	49643	49712	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	CDS	49713	49785	0.58	+	2	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	exon	49713	49785	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	intron	49786	49873	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	CDS	49874	50864	0.31	+	1	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	exon	49874	50864	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	intron	50865	51067	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	CDS	51068	51127	0.42	+	0	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	exon	51068	51127	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	intron	51128	51276	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	CDS	51277	51289	0.63	+	0	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	exon	51277	51289	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	intron	51290	51437	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	CDS	51438	51501	1	+	2	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	exon	51438	51501	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	intron	51502	51634	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	CDS	51635	51680	0.9	+	1	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	exon	51635	51680	.	+	.	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
Ledus.S3	AUGUSTUS	stop_codon	51681	51683	.	+	0	transcript_id "Ledus.S3G000700.t1"; gene_id "Ledus.S3G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6122.t1 is derived from g3565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29017184	29018969	.	+	.	Ledus.S1G354300
Ledus.S1	AUGUSTUS	transcript	29017184	29018969	.	+	.	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	start_codon	29017184	29017186	.	+	0	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	CDS	29017184	29017432	0.99	+	0	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	exon	29017184	29017432	.	+	.	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	intron	29017433	29017606	.	+	.	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	CDS	29017607	29017716	1	+	0	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	exon	29017607	29017716	.	+	.	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	intron	29017717	29017872	.	+	.	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	CDS	29017873	29017993	1	+	1	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	exon	29017873	29017993	.	+	.	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	intron	29017994	29018098	.	+	.	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	CDS	29018099	29018194	1	+	0	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	exon	29018099	29018194	.	+	.	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	intron	29018195	29018418	.	+	.	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	CDS	29018419	29018807	0.77	+	0	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	exon	29018419	29018807	.	+	.	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	intron	29018808	29018881	.	+	.	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	CDS	29018882	29018969	0.78	+	1	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	exon	29018882	29018969	.	+	.	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
Ledus.S1	AUGUSTUS	stop_codon	29018970	29018972	.	+	0	transcript_id "Ledus.S1G354300.t1"; gene_id "Ledus.S1G354300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10391.t1 is derived from g11421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14736868	14738991	.	-	.	Ledus.S3G186800
Ledus.S3	AUGUSTUS	transcript	14736868	14738991	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	stop_codon	14736865	14736867	.	-	0	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	CDS	14736868	14737056	0.96	-	0	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	exon	14736868	14737056	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	intron	14737057	14737145	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	CDS	14737146	14737403	1	-	0	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	exon	14737146	14737403	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	intron	14737404	14737514	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	CDS	14737515	14737722	1	-	1	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	exon	14737515	14737722	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	intron	14737723	14737812	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	CDS	14737813	14737916	0.99	-	0	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	exon	14737813	14737916	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	intron	14737917	14738017	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	CDS	14738018	14738201	0.98	-	1	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	exon	14738018	14738201	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	intron	14738202	14738291	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	CDS	14738292	14738404	0.91	-	0	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	exon	14738292	14738404	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	intron	14738405	14738484	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	CDS	14738485	14738670	0.8	-	0	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	exon	14738485	14738670	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	intron	14738671	14738748	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	CDS	14738749	14738991	1	-	0	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	exon	14738749	14738991	.	-	.	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
Ledus.S3	AUGUSTUS	start_codon	14738989	14738991	.	-	0	transcript_id "Ledus.S3G186800.t1"; gene_id "Ledus.S3G186800"
# This transcript jg7840.t2 is derived from g12511.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7841.t1 is derived from g12512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7407396	7411246	.	-	.	Ledus.S5G061900
Ledus.S5	AUGUSTUS	transcript	7407396	7411246	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	stop_codon	7407393	7407395	.	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7407396	7407459	0.68	-	1	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7407396	7407459	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7407460	7407641	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7407642	7407679	0.68	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7407642	7407679	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7407680	7407751	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7407752	7407772	0.78	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7407752	7407772	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7407773	7407869	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7407870	7408049	1	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7407870	7408049	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7408050	7408131	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7408132	7408222	1	-	1	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7408132	7408222	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7408223	7408376	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7408377	7408471	0.72	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7408377	7408471	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7408472	7408580	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7408581	7408769	0.99	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7408581	7408769	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7408770	7408873	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7408874	7408978	1	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7408874	7408978	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7408979	7409124	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7409125	7409217	1	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7409125	7409217	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7409218	7409324	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7409325	7409432	0.95	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7409325	7409432	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7409433	7409544	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7409545	7409613	1	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7409545	7409613	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7409614	7409779	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7409780	7409837	1	-	1	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7409780	7409837	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7409838	7409941	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7409942	7410050	1	-	2	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7409942	7410050	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7410051	7410181	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7410182	7410293	1	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7410182	7410293	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7410294	7410410	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7410411	7410629	1	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7410411	7410629	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	intron	7410630	7410889	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	CDS	7410890	7411246	0.99	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	exon	7410890	7411246	.	-	.	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
Ledus.S5	AUGUSTUS	start_codon	7411244	7411246	.	-	0	transcript_id "Ledus.S5G061900.t1"; gene_id "Ledus.S5G061900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8312.t1 is derived from g12984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10677370	10678855	.	-	.	Ledus.S5G109000
Ledus.S5	AUGUSTUS	transcript	10677370	10678855	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	stop_codon	10677367	10677369	.	-	0	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	CDS	10677370	10677526	1	-	1	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	exon	10677370	10677526	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	intron	10677527	10677657	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	CDS	10677658	10677870	1	-	1	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	exon	10677658	10677870	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	intron	10677871	10677945	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	CDS	10677946	10678046	0.96	-	0	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	exon	10677946	10678046	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	intron	10678047	10678131	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	CDS	10678132	10678164	0.72	-	0	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	exon	10678132	10678164	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	intron	10678165	10678291	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	CDS	10678292	10678356	0.72	-	2	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	exon	10678292	10678356	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	intron	10678357	10678445	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	CDS	10678446	10678514	1	-	2	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	exon	10678446	10678514	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	intron	10678515	10678590	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	CDS	10678591	10678855	1	-	0	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	exon	10678591	10678855	.	-	.	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
Ledus.S5	AUGUSTUS	start_codon	10678853	10678855	.	-	0	transcript_id "Ledus.S5G109000.t1"; gene_id "Ledus.S5G109000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13168.t1 is derived from g6978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7915856	7916065	.	-	.	Ledus.S6G023000
Ledus.S6	AUGUSTUS	transcript	7915856	7916065	.	-	.	transcript_id "Ledus.S6G023000.t1"; gene_id "Ledus.S6G023000"
Ledus.S6	AUGUSTUS	stop_codon	7915853	7915855	.	-	0	transcript_id "Ledus.S6G023000.t1"; gene_id "Ledus.S6G023000"
Ledus.S6	AUGUSTUS	CDS	7915856	7916065	0.82	-	0	transcript_id "Ledus.S6G023000.t1"; gene_id "Ledus.S6G023000"
Ledus.S6	AUGUSTUS	exon	7915856	7916065	.	-	.	transcript_id "Ledus.S6G023000.t1"; gene_id "Ledus.S6G023000"
Ledus.S6	AUGUSTUS	start_codon	7916063	7916065	.	-	0	transcript_id "Ledus.S6G023000.t1"; gene_id "Ledus.S6G023000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2807.t1 is derived from g241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3868130	3869623	.	+	.	Ledus.S1G022800
Ledus.S1	AUGUSTUS	transcript	3868130	3869623	.	+	.	transcript_id "Ledus.S1G022800.t1"; gene_id "Ledus.S1G022800"
Ledus.S1	AUGUSTUS	start_codon	3868130	3868132	.	+	0	transcript_id "Ledus.S1G022800.t1"; gene_id "Ledus.S1G022800"
Ledus.S1	AUGUSTUS	CDS	3868130	3869623	1	+	0	transcript_id "Ledus.S1G022800.t1"; gene_id "Ledus.S1G022800"
Ledus.S1	AUGUSTUS	exon	3868130	3869623	.	+	.	transcript_id "Ledus.S1G022800.t1"; gene_id "Ledus.S1G022800"
Ledus.S1	AUGUSTUS	stop_codon	3869624	3869626	.	+	0	transcript_id "Ledus.S1G022800.t1"; gene_id "Ledus.S1G022800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10205.t1 is derived from g11235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13566984	13570662	.	+	.	Ledus.S3G168200
Ledus.S3	AUGUSTUS	transcript	13566984	13570662	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	start_codon	13566984	13566986	.	+	0	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	CDS	13566984	13566998	0.85	+	0	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	exon	13566984	13566998	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	intron	13566999	13567137	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	CDS	13567138	13567315	0.41	+	0	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	exon	13567138	13567315	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	intron	13567316	13567388	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	CDS	13567389	13567606	0.99	+	2	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	exon	13567389	13567606	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	intron	13567607	13567697	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	CDS	13567698	13567985	0.88	+	0	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	exon	13567698	13567985	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	intron	13567986	13568079	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	CDS	13568080	13568348	1	+	0	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	exon	13568080	13568348	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	intron	13568349	13568434	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	CDS	13568435	13569210	0.84	+	1	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	exon	13568435	13569210	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	intron	13569211	13569418	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	CDS	13569419	13570662	0.64	+	2	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	exon	13569419	13570662	.	+	.	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
Ledus.S3	AUGUSTUS	stop_codon	13570663	13570665	.	+	0	transcript_id "Ledus.S3G168200.t1"; gene_id "Ledus.S3G168200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1450.t1 is derived from g8311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10255541	10255993	.	-	.	Ledus.S2G133200
Ledus.S2	AUGUSTUS	transcript	10255541	10255993	.	-	.	transcript_id "Ledus.S2G133200.t1"; gene_id "Ledus.S2G133200"
Ledus.S2	AUGUSTUS	stop_codon	10255538	10255540	.	-	0	transcript_id "Ledus.S2G133200.t1"; gene_id "Ledus.S2G133200"
Ledus.S2	AUGUSTUS	CDS	10255541	10255993	0.51	-	0	transcript_id "Ledus.S2G133200.t1"; gene_id "Ledus.S2G133200"
Ledus.S2	AUGUSTUS	exon	10255541	10255993	.	-	.	transcript_id "Ledus.S2G133200.t1"; gene_id "Ledus.S2G133200"
Ledus.S2	AUGUSTUS	start_codon	10255991	10255993	.	-	0	transcript_id "Ledus.S2G133200.t1"; gene_id "Ledus.S2G133200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1707.t1 is derived from g8568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12011397	12011621	.	+	.	Ledus.S2G158900
Ledus.S2	AUGUSTUS	transcript	12011397	12011621	.	+	.	transcript_id "Ledus.S2G158900.t1"; gene_id "Ledus.S2G158900"
Ledus.S2	AUGUSTUS	start_codon	12011397	12011399	.	+	0	transcript_id "Ledus.S2G158900.t1"; gene_id "Ledus.S2G158900"
Ledus.S2	AUGUSTUS	CDS	12011397	12011621	0.74	+	0	transcript_id "Ledus.S2G158900.t1"; gene_id "Ledus.S2G158900"
Ledus.S2	AUGUSTUS	exon	12011397	12011621	.	+	.	transcript_id "Ledus.S2G158900.t1"; gene_id "Ledus.S2G158900"
Ledus.S2	AUGUSTUS	stop_codon	12011622	12011624	.	+	0	transcript_id "Ledus.S2G158900.t1"; gene_id "Ledus.S2G158900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3363.t1 is derived from g798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7866696	7867487	.	+	.	Ledus.S1G078400
Ledus.S1	AUGUSTUS	transcript	7866696	7867487	.	+	.	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	start_codon	7866696	7866698	.	+	0	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	CDS	7866696	7866780	0.35	+	0	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	exon	7866696	7866780	.	+	.	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	intron	7866781	7866867	.	+	.	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	CDS	7866868	7867117	1	+	2	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	exon	7866868	7867117	.	+	.	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	intron	7867118	7867215	.	+	.	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	CDS	7867216	7867359	1	+	1	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	exon	7867216	7867359	.	+	.	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	intron	7867360	7867441	.	+	.	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	CDS	7867442	7867487	1	+	1	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	exon	7867442	7867487	.	+	.	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
Ledus.S1	AUGUSTUS	stop_codon	7867488	7867490	.	+	0	transcript_id "Ledus.S1G078400.t1"; gene_id "Ledus.S1G078400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4957.t1 is derived from g2395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20876172	20883002	.	+	.	Ledus.S1G237800
Ledus.S1	AUGUSTUS	transcript	20876172	20883002	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	start_codon	20876172	20876174	.	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20876172	20876303	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20876172	20876303	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20876304	20876430	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20876431	20876556	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20876431	20876556	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20876557	20876631	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20876632	20876696	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20876632	20876696	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20876697	20876806	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20876807	20876918	1	+	1	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20876807	20876918	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20876919	20876992	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20876993	20877028	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20876993	20877028	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20877029	20877114	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20877115	20877264	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20877115	20877264	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20877265	20877500	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20877501	20877542	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20877501	20877542	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20877543	20877710	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20877711	20877782	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20877711	20877782	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20877783	20877970	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20877971	20878105	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20877971	20878105	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20878106	20878197	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20878198	20878263	0.97	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20878198	20878263	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20878264	20878372	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20878373	20878485	0.67	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20878373	20878485	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20878486	20878569	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20878570	20878609	0.74	+	1	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20878570	20878609	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20878610	20878714	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20878715	20878807	0.95	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20878715	20878807	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20878808	20878924	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20878925	20879008	0.99	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20878925	20879008	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20879009	20879118	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20879119	20879247	0.95	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20879119	20879247	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20879248	20879369	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20879370	20879480	0.89	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20879370	20879480	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20879481	20879587	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20879588	20879657	0.98	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20879588	20879657	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20879658	20879752	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20879753	20879868	1	+	2	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20879753	20879868	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20879869	20879964	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20879965	20880078	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20879965	20880078	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20880079	20880217	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20880218	20880304	0.94	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20880218	20880304	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20880305	20880416	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20880417	20880541	0.9	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20880417	20880541	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20880542	20880674	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20880675	20880747	0.97	+	1	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20880675	20880747	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20880748	20880859	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20880860	20880901	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20880860	20880901	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20880902	20881094	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20881095	20881322	0.84	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20881095	20881322	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20881323	20881393	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20881394	20881684	0.95	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20881394	20881684	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20881685	20881771	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20881772	20881849	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20881772	20881849	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20881850	20881933	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20881934	20882064	0.95	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20881934	20882064	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20882065	20882151	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20882152	20882299	1	+	1	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20882152	20882299	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20882300	20882396	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20882397	20882438	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20882397	20882438	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20882439	20882517	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20882518	20882620	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20882518	20882620	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20882621	20882712	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20882713	20882798	1	+	2	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20882713	20882798	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	intron	20882799	20882873	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	CDS	20882874	20883002	1	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	exon	20882874	20883002	.	+	.	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
Ledus.S1	AUGUSTUS	stop_codon	20883003	20883005	.	+	0	transcript_id "Ledus.S1G237800.t1"; gene_id "Ledus.S1G237800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1369.t1 is derived from g8230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9486252	9492526	.	+	.	Ledus.S2G125100
Ledus.S2	AUGUSTUS	transcript	9486252	9492526	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	start_codon	9486252	9486254	.	+	0	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9486252	9487178	0.98	+	0	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9486252	9487178	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	intron	9487179	9487317	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9487318	9487521	1	+	0	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9487318	9487521	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	intron	9487522	9487739	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9487740	9488117	0.99	+	0	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9487740	9488117	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	intron	9488118	9488236	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9488237	9488343	1	+	0	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9488237	9488343	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	intron	9488344	9488499	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9488500	9490341	0.97	+	1	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9488500	9490341	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	intron	9490342	9490489	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9490490	9490631	1	+	1	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9490490	9490631	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	intron	9490632	9490774	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9490775	9490961	1	+	0	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9490775	9490961	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	intron	9490962	9491210	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9491211	9491374	0.97	+	2	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9491211	9491374	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	intron	9491375	9491490	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9491491	9491570	0.99	+	0	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9491491	9491570	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	intron	9491571	9491651	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9491652	9491751	0.67	+	1	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9491652	9491751	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	intron	9491752	9491876	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9491877	9491938	0.99	+	0	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9491877	9491938	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	intron	9491939	9492061	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9492062	9492203	1	+	1	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9492062	9492203	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	intron	9492204	9492376	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	CDS	9492377	9492526	1	+	0	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	exon	9492377	9492526	.	+	.	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
Ledus.S2	AUGUSTUS	stop_codon	9492527	9492529	.	+	0	transcript_id "Ledus.S2G125100.t1"; gene_id "Ledus.S2G125100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11683.t1 is derived from g5302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5961877	5962320	.	-	.	Ledus.S4G083900
Ledus.S4	AUGUSTUS	transcript	5961877	5962320	.	-	.	transcript_id "Ledus.S4G083900.t1"; gene_id "Ledus.S4G083900"
Ledus.S4	AUGUSTUS	stop_codon	5961874	5961876	.	-	0	transcript_id "Ledus.S4G083900.t1"; gene_id "Ledus.S4G083900"
Ledus.S4	AUGUSTUS	CDS	5961877	5962320	0.71	-	0	transcript_id "Ledus.S4G083900.t1"; gene_id "Ledus.S4G083900"
Ledus.S4	AUGUSTUS	exon	5961877	5962320	.	-	.	transcript_id "Ledus.S4G083900.t1"; gene_id "Ledus.S4G083900"
Ledus.S4	AUGUSTUS	start_codon	5962318	5962320	.	-	0	transcript_id "Ledus.S4G083900.t1"; gene_id "Ledus.S4G083900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9417.t1 is derived from g10447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6619935	6620863	.	-	.	Ledus.S3G089400
Ledus.S3	AUGUSTUS	transcript	6619935	6620863	.	-	.	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	stop_codon	6619932	6619934	.	-	0	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	CDS	6619935	6620074	0.29	-	2	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	exon	6619935	6620074	.	-	.	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	intron	6620075	6620159	.	-	.	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	CDS	6620160	6620192	1	-	2	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	exon	6620160	6620192	.	-	.	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	intron	6620193	6620264	.	-	.	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	CDS	6620265	6620362	1	-	1	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	exon	6620265	6620362	.	-	.	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	intron	6620363	6620479	.	-	.	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	CDS	6620480	6620542	1	-	1	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	exon	6620480	6620542	.	-	.	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	intron	6620543	6620804	.	-	.	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	CDS	6620805	6620863	0.98	-	0	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	exon	6620805	6620863	.	-	.	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
Ledus.S3	AUGUSTUS	start_codon	6620861	6620863	.	-	0	transcript_id "Ledus.S3G089400.t1"; gene_id "Ledus.S3G089400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4916.t1 is derived from g2354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20617612	20618562	.	-	.	Ledus.S1G233700
Ledus.S1	AUGUSTUS	transcript	20617612	20618562	.	-	.	transcript_id "Ledus.S1G233700.t1"; gene_id "Ledus.S1G233700"
Ledus.S1	AUGUSTUS	stop_codon	20617609	20617611	.	-	0	transcript_id "Ledus.S1G233700.t1"; gene_id "Ledus.S1G233700"
Ledus.S1	AUGUSTUS	CDS	20617612	20618562	0.91	-	0	transcript_id "Ledus.S1G233700.t1"; gene_id "Ledus.S1G233700"
Ledus.S1	AUGUSTUS	exon	20617612	20618562	.	-	.	transcript_id "Ledus.S1G233700.t1"; gene_id "Ledus.S1G233700"
Ledus.S1	AUGUSTUS	start_codon	20618560	20618562	.	-	0	transcript_id "Ledus.S1G233700.t1"; gene_id "Ledus.S1G233700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg2980.t1 is derived from g415.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5070586	5074505	.	+	.	Ledus.S1G040100
Ledus.S1	AUGUSTUS	transcript	5070586	5074505	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	start_codon	5070586	5070588	.	+	0	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5070586	5070693	0.97	+	0	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5070586	5070693	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5070694	5070839	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5070840	5070947	0.97	+	0	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5070840	5070947	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5070948	5071030	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5071031	5071624	0.84	+	0	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5071031	5071624	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5071625	5071768	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5071769	5071929	1	+	0	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5071769	5071929	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5071930	5072062	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5072063	5072264	1	+	1	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5072063	5072264	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5072265	5072356	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5072357	5072407	0.99	+	0	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5072357	5072407	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5072408	5072516	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5072517	5072657	0.94	+	0	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5072517	5072657	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5072658	5072770	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5072771	5073010	0.97	+	0	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5072771	5073010	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5073011	5073302	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5073303	5073389	1	+	0	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5073303	5073389	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5073390	5073631	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5073632	5073735	1	+	0	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5073632	5073735	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5073736	5073811	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5073812	5074505	1	+	1	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5073812	5074505	.	+	.	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	stop_codon	5074506	5074508	.	+	0	transcript_id "Ledus.S1G040100.t1"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	transcript	5070586	5074505	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	start_codon	5070586	5070588	.	+	0	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5070586	5070693	0.98	+	0	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5070586	5070693	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5070694	5070833	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5070834	5070839	0.86	+	0	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5070834	5070839	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5070840	5071030	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5071031	5071624	0.89	+	0	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5071031	5071624	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5071625	5071768	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5071769	5071929	1	+	0	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5071769	5071929	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5071930	5072062	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5072063	5072264	1	+	1	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5072063	5072264	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5072265	5072356	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5072357	5072407	0.99	+	0	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5072357	5072407	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5072408	5072516	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5072517	5072657	0.91	+	0	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5072517	5072657	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5072658	5072770	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5072771	5073010	0.96	+	0	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5072771	5073010	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5073011	5073302	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5073303	5073389	1	+	0	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5073303	5073389	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5073390	5073631	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5073632	5073735	1	+	0	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5073632	5073735	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5073736	5073811	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5073812	5074505	0.99	+	1	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5073812	5074505	.	+	.	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	stop_codon	5074506	5074508	.	+	0	transcript_id "Ledus.S1G040100.t2"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	transcript	5070586	5074505	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	start_codon	5070586	5070588	.	+	0	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5070586	5070693	0.97	+	0	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5070586	5070693	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5070694	5070839	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5070840	5070947	0.78	+	0	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5070840	5070947	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5070948	5071030	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5071031	5071624	0.86	+	0	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5071031	5071624	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5071625	5071768	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5071769	5071929	1	+	0	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5071769	5071929	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5071930	5072062	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5072063	5072264	1	+	1	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5072063	5072264	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5072265	5072359	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5072360	5072407	0.95	+	0	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5072360	5072407	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5072408	5072516	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5072517	5072657	0.88	+	0	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5072517	5072657	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5072658	5072770	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5072771	5073010	0.98	+	0	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5072771	5073010	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5073011	5073302	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5073303	5073389	1	+	0	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5073303	5073389	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5073390	5073631	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5073632	5073735	1	+	0	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5073632	5073735	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	intron	5073736	5073811	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	CDS	5073812	5074505	1	+	1	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	exon	5073812	5074505	.	+	.	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
Ledus.S1	AUGUSTUS	stop_codon	5074506	5074508	.	+	0	transcript_id "Ledus.S1G040100.t3"; gene_id "Ledus.S1G040100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6694.t1 is derived from g4137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33329577	33331645	.	+	.	Ledus.S1G411500
Ledus.S1	AUGUSTUS	transcript	33329577	33331645	.	+	.	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	start_codon	33329577	33329579	.	+	0	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	CDS	33329577	33329618	0.85	+	0	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	exon	33329577	33329618	.	+	.	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	intron	33329619	33329907	.	+	.	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	CDS	33329908	33329963	0.7	+	0	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	exon	33329908	33329963	.	+	.	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	intron	33329964	33330566	.	+	.	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	CDS	33330567	33330701	1	+	1	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	exon	33330567	33330701	.	+	.	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	intron	33330702	33330798	.	+	.	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	CDS	33330799	33331645	0.99	+	1	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	exon	33330799	33331645	.	+	.	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
Ledus.S1	AUGUSTUS	stop_codon	33331646	33331648	.	+	0	transcript_id "Ledus.S1G411500.t1"; gene_id "Ledus.S1G411500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5003.t1 is derived from g2441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21096134	21099141	.	+	.	Ledus.S1G242400
Ledus.S1	AUGUSTUS	transcript	21096134	21099141	.	+	.	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	start_codon	21096134	21096136	.	+	0	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	CDS	21096134	21096466	0.97	+	0	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	exon	21096134	21096466	.	+	.	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	intron	21096467	21096780	.	+	.	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	CDS	21096781	21097345	1	+	0	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	exon	21096781	21097345	.	+	.	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	intron	21097346	21097835	.	+	.	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	CDS	21097836	21098122	1	+	2	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	exon	21097836	21098122	.	+	.	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	intron	21098123	21098754	.	+	.	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	CDS	21098755	21099141	0.99	+	0	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	exon	21098755	21099141	.	+	.	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
Ledus.S1	AUGUSTUS	stop_codon	21099142	21099144	.	+	0	transcript_id "Ledus.S1G242400.t1"; gene_id "Ledus.S1G242400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4091.t1 is derived from g1527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14647000	14648314	.	+	.	Ledus.S1G151200
Ledus.S1	AUGUSTUS	transcript	14647000	14648314	.	+	.	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	start_codon	14647000	14647002	.	+	0	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	CDS	14647000	14647487	0.41	+	0	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	exon	14647000	14647487	.	+	.	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	intron	14647488	14647579	.	+	.	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	CDS	14647580	14647724	1	+	1	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	exon	14647580	14647724	.	+	.	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	intron	14647725	14647804	.	+	.	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	CDS	14647805	14647923	1	+	0	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	exon	14647805	14647923	.	+	.	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	intron	14647924	14648013	.	+	.	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	CDS	14648014	14648314	1	+	1	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	exon	14648014	14648314	.	+	.	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
Ledus.S1	AUGUSTUS	stop_codon	14648315	14648317	.	+	0	transcript_id "Ledus.S1G151200.t1"; gene_id "Ledus.S1G151200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2039.t1 is derived from g8902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14289067	14292000	.	+	.	Ledus.S2G192100
Ledus.S2	AUGUSTUS	transcript	14289067	14292000	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	start_codon	14289067	14289069	.	+	0	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14289067	14289080	0.23	+	0	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14289067	14289080	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	intron	14289081	14289242	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14289243	14289329	0.33	+	1	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14289243	14289329	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	intron	14289330	14289460	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14289461	14289514	0.26	+	1	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14289461	14289514	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	intron	14289515	14289724	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14289725	14289808	0.74	+	1	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14289725	14289808	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	intron	14289809	14289992	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14289993	14290167	1	+	1	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14289993	14290167	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	intron	14290168	14290339	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14290340	14290400	1	+	0	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14290340	14290400	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	intron	14290401	14290491	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14290492	14290624	1	+	2	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14290492	14290624	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	intron	14290625	14290694	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14290695	14290818	1	+	1	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14290695	14290818	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	intron	14290819	14290967	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14290968	14291024	1	+	0	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14290968	14291024	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	intron	14291025	14291216	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14291217	14291313	1	+	0	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14291217	14291313	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	intron	14291314	14291425	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14291426	14291633	1	+	2	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14291426	14291633	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	intron	14291634	14291759	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14291760	14291820	0.91	+	1	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14291760	14291820	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	intron	14291821	14291937	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	CDS	14291938	14292000	0.98	+	0	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	exon	14291938	14292000	.	+	.	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
Ledus.S2	AUGUSTUS	stop_codon	14292001	14292003	.	+	0	transcript_id "Ledus.S2G192100.t1"; gene_id "Ledus.S2G192100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5817.t1 is derived from g3259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27077581	27077983	.	-	.	Ledus.S1G323800
Ledus.S1	AUGUSTUS	transcript	27077581	27077983	.	-	.	transcript_id "Ledus.S1G323800.t1"; gene_id "Ledus.S1G323800"
Ledus.S1	AUGUSTUS	stop_codon	27077578	27077580	.	-	0	transcript_id "Ledus.S1G323800.t1"; gene_id "Ledus.S1G323800"
Ledus.S1	AUGUSTUS	CDS	27077581	27077777	0.96	-	2	transcript_id "Ledus.S1G323800.t1"; gene_id "Ledus.S1G323800"
Ledus.S1	AUGUSTUS	exon	27077581	27077777	.	-	.	transcript_id "Ledus.S1G323800.t1"; gene_id "Ledus.S1G323800"
Ledus.S1	AUGUSTUS	intron	27077778	27077925	.	-	.	transcript_id "Ledus.S1G323800.t1"; gene_id "Ledus.S1G323800"
Ledus.S1	AUGUSTUS	CDS	27077926	27077983	0.9	-	0	transcript_id "Ledus.S1G323800.t1"; gene_id "Ledus.S1G323800"
Ledus.S1	AUGUSTUS	exon	27077926	27077983	.	-	.	transcript_id "Ledus.S1G323800.t1"; gene_id "Ledus.S1G323800"
Ledus.S1	AUGUSTUS	start_codon	27077981	27077983	.	-	0	transcript_id "Ledus.S1G323800.t1"; gene_id "Ledus.S1G323800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2806.t1 is derived from g240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3864673	3866739	.	+	.	Ledus.S1G022700
Ledus.S1	AUGUSTUS	transcript	3864673	3866739	.	+	.	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	start_codon	3864673	3864675	.	+	0	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	CDS	3864673	3865562	0.96	+	0	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	exon	3864673	3865562	.	+	.	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	intron	3865563	3865692	.	+	.	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	CDS	3865693	3866017	1	+	1	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	exon	3865693	3866017	.	+	.	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	intron	3866018	3866178	.	+	.	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	CDS	3866179	3866325	1	+	0	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	exon	3866179	3866325	.	+	.	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	intron	3866326	3866412	.	+	.	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	CDS	3866413	3866739	1	+	0	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	exon	3866413	3866739	.	+	.	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
Ledus.S1	AUGUSTUS	stop_codon	3866740	3866742	.	+	0	transcript_id "Ledus.S1G022700.t1"; gene_id "Ledus.S1G022700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3990.t1 is derived from g1426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13929820	13931169	.	-	.	Ledus.S1G141100
Ledus.S1	AUGUSTUS	transcript	13929820	13931169	.	-	.	transcript_id "Ledus.S1G141100.t1"; gene_id "Ledus.S1G141100"
Ledus.S1	AUGUSTUS	stop_codon	13929817	13929819	.	-	0	transcript_id "Ledus.S1G141100.t1"; gene_id "Ledus.S1G141100"
Ledus.S1	AUGUSTUS	CDS	13929820	13929851	0.94	-	2	transcript_id "Ledus.S1G141100.t1"; gene_id "Ledus.S1G141100"
Ledus.S1	AUGUSTUS	exon	13929820	13929851	.	-	.	transcript_id "Ledus.S1G141100.t1"; gene_id "Ledus.S1G141100"
Ledus.S1	AUGUSTUS	intron	13929852	13930135	.	-	.	transcript_id "Ledus.S1G141100.t1"; gene_id "Ledus.S1G141100"
Ledus.S1	AUGUSTUS	CDS	13930136	13930196	0.97	-	0	transcript_id "Ledus.S1G141100.t1"; gene_id "Ledus.S1G141100"
Ledus.S1	AUGUSTUS	exon	13930136	13930196	.	-	.	transcript_id "Ledus.S1G141100.t1"; gene_id "Ledus.S1G141100"
Ledus.S1	AUGUSTUS	intron	13930197	13930944	.	-	.	transcript_id "Ledus.S1G141100.t1"; gene_id "Ledus.S1G141100"
Ledus.S1	AUGUSTUS	CDS	13930945	13931169	0.67	-	0	transcript_id "Ledus.S1G141100.t1"; gene_id "Ledus.S1G141100"
Ledus.S1	AUGUSTUS	exon	13930945	13931169	.	-	.	transcript_id "Ledus.S1G141100.t1"; gene_id "Ledus.S1G141100"
Ledus.S1	AUGUSTUS	start_codon	13931167	13931169	.	-	0	transcript_id "Ledus.S1G141100.t1"; gene_id "Ledus.S1G141100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6336.t1 is derived from g3779.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30574134	30576551	.	-	.	Ledus.S1G375700
Ledus.S1	AUGUSTUS	transcript	30574134	30574996	.	-	.	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	stop_codon	30574131	30574133	.	-	0	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	CDS	30574134	30574195	0.56	-	2	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	exon	30574134	30574195	.	-	.	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	intron	30574196	30574271	.	-	.	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	CDS	30574272	30574352	0.55	-	2	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	exon	30574272	30574352	.	-	.	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	intron	30574353	30574600	.	-	.	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	CDS	30574601	30574854	0.65	-	1	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	exon	30574601	30574854	.	-	.	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	intron	30574855	30574922	.	-	.	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	CDS	30574923	30574996	0.75	-	0	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	exon	30574923	30574996	.	-	.	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	start_codon	30574994	30574996	.	-	0	transcript_id "Ledus.S1G375700.t1"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	transcript	30574566	30576551	.	-	.	transcript_id "Ledus.S1G375700.t2"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	stop_codon	30574563	30574565	.	-	0	transcript_id "Ledus.S1G375700.t2"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	CDS	30574566	30576551	0.92	-	0	transcript_id "Ledus.S1G375700.t2"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	exon	30574566	30576551	.	-	.	transcript_id "Ledus.S1G375700.t2"; gene_id "Ledus.S1G375700"
Ledus.S1	AUGUSTUS	start_codon	30576549	30576551	.	-	0	transcript_id "Ledus.S1G375700.t2"; gene_id "Ledus.S1G375700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10949.t1 is derived from g4567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	842388	844796	.	+	.	Ledus.S4G010500
Ledus.S4	AUGUSTUS	transcript	842767	844796	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	start_codon	842767	842769	.	+	0	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	842767	842892	0.98	+	0	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	842767	842892	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	842893	843026	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	843027	843065	1	+	0	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	843027	843065	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	843066	843150	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	843151	843252	1	+	0	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	843151	843252	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	843253	843369	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	843370	843493	1	+	0	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	843370	843493	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	843494	843581	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	843582	843876	0.81	+	2	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	843582	843876	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	843877	843971	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	843972	844026	1	+	1	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	843972	844026	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	844027	844179	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	844180	844244	0.46	+	0	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	844180	844244	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	844245	844571	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	844572	844613	0.45	+	1	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	844572	844613	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	844614	844777	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	844778	844796	0.45	+	1	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	844778	844796	.	+	.	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	stop_codon	844797	844799	.	+	0	transcript_id "Ledus.S4G010500.t1"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	transcript	842388	844796	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	start_codon	842388	842390	.	+	0	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	842388	842419	0.42	+	0	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	842388	842419	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	842420	842516	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	842517	842596	0.76	+	1	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	842517	842596	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	842597	842812	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	842813	842892	1	+	2	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	842813	842892	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	842893	843026	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	843027	843065	1	+	0	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	843027	843065	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	843066	843150	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	843151	843252	1	+	0	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	843151	843252	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	843253	843369	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	843370	843493	1	+	0	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	843370	843493	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	843494	843581	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	843582	843876	0.88	+	2	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	843582	843876	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	843877	843971	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	843972	844026	1	+	1	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	843972	844026	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	844027	844179	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	844180	844244	0.42	+	0	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	844180	844244	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	844245	844571	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	844572	844613	0.4	+	1	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	844572	844613	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	intron	844614	844777	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	CDS	844778	844796	0.4	+	1	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	exon	844778	844796	.	+	.	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
Ledus.S4	AUGUSTUS	stop_codon	844797	844799	.	+	0	transcript_id "Ledus.S4G010500.t2"; gene_id "Ledus.S4G010500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11510.t1 is derived from g5128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4999626	5001320	.	+	.	Ledus.S4G066600
Ledus.S4	AUGUSTUS	transcript	4999626	5001320	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	start_codon	4999626	4999628	.	+	0	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	CDS	4999626	4999628	0.94	+	0	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	exon	4999626	4999628	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	intron	4999629	4999761	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	CDS	4999762	4999881	1	+	0	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	exon	4999762	4999881	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	intron	4999882	4999975	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	CDS	4999976	5000043	1	+	0	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	exon	4999976	5000043	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	intron	5000044	5000142	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	CDS	5000143	5000251	1	+	1	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	exon	5000143	5000251	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	intron	5000252	5000335	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	CDS	5000336	5000404	1	+	0	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	exon	5000336	5000404	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	intron	5000405	5000570	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	CDS	5000571	5000628	1	+	0	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	exon	5000571	5000628	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	intron	5000629	5000774	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	CDS	5000775	5001010	0.99	+	2	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	exon	5000775	5001010	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	intron	5001011	5001093	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	CDS	5001094	5001145	1	+	0	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	exon	5001094	5001145	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	intron	5001146	5001255	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	CDS	5001256	5001320	0.99	+	2	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	exon	5001256	5001320	.	+	.	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
Ledus.S4	AUGUSTUS	stop_codon	5001321	5001323	.	+	0	transcript_id "Ledus.S4G066600.t1"; gene_id "Ledus.S4G066600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10215.t1 is derived from g11245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13629254	13630222	.	+	.	Ledus.S3G169200
Ledus.S3	AUGUSTUS	transcript	13629254	13630222	.	+	.	transcript_id "Ledus.S3G169200.t1"; gene_id "Ledus.S3G169200"
Ledus.S3	AUGUSTUS	start_codon	13629254	13629256	.	+	0	transcript_id "Ledus.S3G169200.t1"; gene_id "Ledus.S3G169200"
Ledus.S3	AUGUSTUS	CDS	13629254	13629571	0.77	+	0	transcript_id "Ledus.S3G169200.t1"; gene_id "Ledus.S3G169200"
Ledus.S3	AUGUSTUS	exon	13629254	13629571	.	+	.	transcript_id "Ledus.S3G169200.t1"; gene_id "Ledus.S3G169200"
Ledus.S3	AUGUSTUS	intron	13629572	13629667	.	+	.	transcript_id "Ledus.S3G169200.t1"; gene_id "Ledus.S3G169200"
Ledus.S3	AUGUSTUS	CDS	13629668	13630222	0.98	+	0	transcript_id "Ledus.S3G169200.t1"; gene_id "Ledus.S3G169200"
Ledus.S3	AUGUSTUS	exon	13629668	13630222	.	+	.	transcript_id "Ledus.S3G169200.t1"; gene_id "Ledus.S3G169200"
Ledus.S3	AUGUSTUS	stop_codon	13630223	13630225	.	+	0	transcript_id "Ledus.S3G169200.t1"; gene_id "Ledus.S3G169200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4924.t1 is derived from g2362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20658436	20664041	.	-	.	Ledus.S1G234500
Ledus.S1	AUGUSTUS	transcript	20658436	20664041	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	stop_codon	20658433	20658435	.	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20658436	20658519	1	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20658436	20658519	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20658520	20658607	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20658608	20658751	1	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20658608	20658751	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20658752	20658848	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20658849	20658905	1	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20658849	20658905	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20658906	20658979	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20658980	20659035	1	-	2	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20658980	20659035	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20659036	20659124	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20659125	20659234	1	-	1	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20659125	20659234	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20659235	20659414	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20659415	20659571	1	-	2	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20659415	20659571	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20659572	20659670	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20659671	20660013	1	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20659671	20660013	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20660014	20660102	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20660103	20660167	1	-	2	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20660103	20660167	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20660168	20660256	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20660257	20660425	1	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20660257	20660425	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20660426	20661228	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20661229	20661691	0.42	-	1	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20661229	20661691	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20661692	20661900	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20661901	20662094	0.68	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20661901	20662094	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20662095	20662195	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20662196	20662375	1	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20662196	20662375	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20662376	20662471	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20662472	20662597	1	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20662472	20662597	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20662598	20662675	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20662676	20662801	1	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20662676	20662801	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20662802	20662885	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20662886	20663047	1	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20662886	20663047	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20663048	20663128	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20663129	20663213	1	-	1	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20663129	20663213	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20663214	20663295	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20663296	20663361	1	-	1	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20663296	20663361	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20663362	20663486	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20663487	20663559	1	-	2	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20663487	20663559	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20663560	20663658	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20663659	20663761	1	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20663659	20663761	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	intron	20663762	20663879	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	CDS	20663880	20664041	0.94	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	exon	20663880	20664041	.	-	.	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
Ledus.S1	AUGUSTUS	start_codon	20664039	20664041	.	-	0	transcript_id "Ledus.S1G234500.t1"; gene_id "Ledus.S1G234500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8925.t1 is derived from g9955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3168584	3170843	.	-	.	Ledus.S3G040200
Ledus.S3	AUGUSTUS	transcript	3168584	3170843	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	stop_codon	3168581	3168583	.	-	0	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3168584	3168606	0.89	-	2	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3168584	3168606	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3168607	3168675	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3168676	3168701	0.89	-	1	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3168676	3168701	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3168702	3168951	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3168952	3169010	0.9	-	0	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3168952	3169010	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3169011	3169294	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3169295	3169324	0.96	-	0	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3169295	3169324	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3169325	3169409	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3169410	3169522	1	-	2	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3169410	3169522	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3169523	3169591	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3169592	3169677	1	-	1	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3169592	3169677	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3169678	3169759	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3169760	3169867	0.91	-	1	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3169760	3169867	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3169868	3169976	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3169977	3170090	0.94	-	1	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3169977	3170090	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3170091	3170161	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3170162	3170298	1	-	0	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3170162	3170298	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3170299	3170392	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3170393	3170664	1	-	2	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3170393	3170664	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3170665	3170752	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3170753	3170843	0.8	-	0	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3170753	3170843	.	-	.	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	start_codon	3170841	3170843	.	-	0	transcript_id "Ledus.S3G040200.t1"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	transcript	3168584	3170782	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	stop_codon	3168581	3168583	.	-	0	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3168584	3168606	0.85	-	2	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3168584	3168606	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3168607	3168675	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3168676	3168701	0.85	-	1	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3168676	3168701	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3168702	3168951	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3168952	3169010	0.84	-	0	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3168952	3169010	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3169011	3169294	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3169295	3169324	0.94	-	0	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3169295	3169324	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3169325	3169409	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3169410	3169522	1	-	2	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3169410	3169522	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3169523	3169591	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3169592	3169677	1	-	1	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3169592	3169677	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3169678	3169759	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3169760	3169867	0.93	-	1	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3169760	3169867	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3169868	3169976	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3169977	3170090	0.96	-	1	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3169977	3170090	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3170091	3170161	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3170162	3170298	1	-	0	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3170162	3170298	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3170299	3170392	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3170393	3170608	0.9	-	0	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3170393	3170608	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	intron	3170609	3170752	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	CDS	3170753	3170782	0.38	-	0	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	exon	3170753	3170782	.	-	.	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
Ledus.S3	AUGUSTUS	start_codon	3170780	3170782	.	-	0	transcript_id "Ledus.S3G040200.t2"; gene_id "Ledus.S3G040200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6227.t1 is derived from g3670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29749963	29751633	.	+	.	Ledus.S1G364800
Ledus.S1	AUGUSTUS	transcript	29749963	29751633	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	start_codon	29749963	29749965	.	+	0	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	CDS	29749963	29750038	0.92	+	0	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	exon	29749963	29750038	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	intron	29750039	29750125	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	CDS	29750126	29750220	1	+	2	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	exon	29750126	29750220	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	intron	29750221	29750327	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	CDS	29750328	29750409	1	+	0	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	exon	29750328	29750409	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	intron	29750410	29750605	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	CDS	29750606	29750702	1	+	2	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	exon	29750606	29750702	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	intron	29750703	29750848	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	CDS	29750849	29750907	1	+	1	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	exon	29750849	29750907	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	intron	29750908	29751017	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	CDS	29751018	29751100	1	+	2	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	exon	29751018	29751100	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	intron	29751101	29751196	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	CDS	29751197	29751292	1	+	0	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	exon	29751197	29751292	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	intron	29751293	29751366	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	CDS	29751367	29751426	1	+	0	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	exon	29751367	29751426	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	intron	29751427	29751543	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	CDS	29751544	29751633	1	+	0	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	exon	29751544	29751633	.	+	.	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
Ledus.S1	AUGUSTUS	stop_codon	29751634	29751636	.	+	0	transcript_id "Ledus.S1G364800.t1"; gene_id "Ledus.S1G364800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7775.t1 is derived from g12446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6433800	6434183	.	-	.	Ledus.S5G055300
Ledus.S5	AUGUSTUS	transcript	6433800	6434183	.	-	.	transcript_id "Ledus.S5G055300.t1"; gene_id "Ledus.S5G055300"
Ledus.S5	AUGUSTUS	stop_codon	6433797	6433799	.	-	0	transcript_id "Ledus.S5G055300.t1"; gene_id "Ledus.S5G055300"
Ledus.S5	AUGUSTUS	CDS	6433800	6433923	0.81	-	1	transcript_id "Ledus.S5G055300.t1"; gene_id "Ledus.S5G055300"
Ledus.S5	AUGUSTUS	exon	6433800	6433923	.	-	.	transcript_id "Ledus.S5G055300.t1"; gene_id "Ledus.S5G055300"
Ledus.S5	AUGUSTUS	intron	6433924	6434064	.	-	.	transcript_id "Ledus.S5G055300.t1"; gene_id "Ledus.S5G055300"
Ledus.S5	AUGUSTUS	CDS	6434065	6434183	0.99	-	0	transcript_id "Ledus.S5G055300.t1"; gene_id "Ledus.S5G055300"
Ledus.S5	AUGUSTUS	exon	6434065	6434183	.	-	.	transcript_id "Ledus.S5G055300.t1"; gene_id "Ledus.S5G055300"
Ledus.S5	AUGUSTUS	start_codon	6434181	6434183	.	-	0	transcript_id "Ledus.S5G055300.t1"; gene_id "Ledus.S5G055300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8.t1 is derived from g12.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C49	AUGUSTUS	gene	8669	10105	.	+	.	Ledus.C49G000100
Ledus.C49	AUGUSTUS	transcript	8669	10105	.	+	.	transcript_id "Ledus.C49G000100.t1"; gene_id "Ledus.C49G000100"
Ledus.C49	AUGUSTUS	start_codon	8669	8671	.	+	0	transcript_id "Ledus.C49G000100.t1"; gene_id "Ledus.C49G000100"
Ledus.C49	AUGUSTUS	CDS	8669	10105	0.33	+	0	transcript_id "Ledus.C49G000100.t1"; gene_id "Ledus.C49G000100"
Ledus.C49	AUGUSTUS	exon	8669	10105	.	+	.	transcript_id "Ledus.C49G000100.t1"; gene_id "Ledus.C49G000100"
Ledus.C49	AUGUSTUS	stop_codon	10106	10108	.	+	0	transcript_id "Ledus.C49G000100.t1"; gene_id "Ledus.C49G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9892.t1 is derived from g10922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10989528	10991106	.	-	.	Ledus.S3G136900
Ledus.S3	AUGUSTUS	transcript	10989528	10991106	.	-	.	transcript_id "Ledus.S3G136900.t1"; gene_id "Ledus.S3G136900"
Ledus.S3	AUGUSTUS	stop_codon	10989525	10989527	.	-	0	transcript_id "Ledus.S3G136900.t1"; gene_id "Ledus.S3G136900"
Ledus.S3	AUGUSTUS	CDS	10989528	10990192	1	-	2	transcript_id "Ledus.S3G136900.t1"; gene_id "Ledus.S3G136900"
Ledus.S3	AUGUSTUS	exon	10989528	10990192	.	-	.	transcript_id "Ledus.S3G136900.t1"; gene_id "Ledus.S3G136900"
Ledus.S3	AUGUSTUS	intron	10990193	10990346	.	-	.	transcript_id "Ledus.S3G136900.t1"; gene_id "Ledus.S3G136900"
Ledus.S3	AUGUSTUS	CDS	10990347	10990616	0.98	-	2	transcript_id "Ledus.S3G136900.t1"; gene_id "Ledus.S3G136900"
Ledus.S3	AUGUSTUS	exon	10990347	10990616	.	-	.	transcript_id "Ledus.S3G136900.t1"; gene_id "Ledus.S3G136900"
Ledus.S3	AUGUSTUS	intron	10990617	10990712	.	-	.	transcript_id "Ledus.S3G136900.t1"; gene_id "Ledus.S3G136900"
Ledus.S3	AUGUSTUS	CDS	10990713	10991106	1	-	0	transcript_id "Ledus.S3G136900.t1"; gene_id "Ledus.S3G136900"
Ledus.S3	AUGUSTUS	exon	10990713	10991106	.	-	.	transcript_id "Ledus.S3G136900.t1"; gene_id "Ledus.S3G136900"
Ledus.S3	AUGUSTUS	start_codon	10991104	10991106	.	-	0	transcript_id "Ledus.S3G136900.t1"; gene_id "Ledus.S3G136900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7500.t1 is derived from g12171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3482049	3482519	.	-	.	Ledus.S5G027800
Ledus.S5	AUGUSTUS	transcript	3482049	3482519	.	-	.	transcript_id "Ledus.S5G027800.t1"; gene_id "Ledus.S5G027800"
Ledus.S5	AUGUSTUS	stop_codon	3482046	3482048	.	-	0	transcript_id "Ledus.S5G027800.t1"; gene_id "Ledus.S5G027800"
Ledus.S5	AUGUSTUS	CDS	3482049	3482519	0.71	-	0	transcript_id "Ledus.S5G027800.t1"; gene_id "Ledus.S5G027800"
Ledus.S5	AUGUSTUS	exon	3482049	3482519	.	-	.	transcript_id "Ledus.S5G027800.t1"; gene_id "Ledus.S5G027800"
Ledus.S5	AUGUSTUS	start_codon	3482517	3482519	.	-	0	transcript_id "Ledus.S5G027800.t1"; gene_id "Ledus.S5G027800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1261.t1 is derived from g8122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8942349	8945792	.	+	.	Ledus.S2G114300
Ledus.S2	AUGUSTUS	transcript	8942349	8945792	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	start_codon	8942349	8942351	.	+	0	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8942349	8942685	0.66	+	0	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8942349	8942685	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8942686	8942767	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8942768	8942901	1	+	2	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8942768	8942901	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8942902	8943037	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8943038	8943181	1	+	0	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8943038	8943181	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8943182	8943278	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8943279	8943393	1	+	0	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8943279	8943393	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8943394	8943477	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8943478	8943805	1	+	2	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8943478	8943805	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8943806	8943899	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8943900	8944113	1	+	1	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8943900	8944113	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8944114	8944209	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8944210	8944302	1	+	0	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8944210	8944302	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8944303	8944380	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8944381	8944636	1	+	0	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8944381	8944636	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8944637	8944725	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8944726	8944838	1	+	2	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8944726	8944838	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8944839	8944950	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8944951	8945049	1	+	0	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8944951	8945049	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8945050	8945187	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8945188	8945235	1	+	0	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8945188	8945235	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8945236	8945314	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8945315	8945425	0.95	+	0	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8945315	8945425	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8945426	8945526	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8945527	8945617	0.99	+	0	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8945527	8945617	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	intron	8945618	8945718	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	CDS	8945719	8945792	0.99	+	2	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	exon	8945719	8945792	.	+	.	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
Ledus.S2	AUGUSTUS	stop_codon	8945793	8945795	.	+	0	transcript_id "Ledus.S2G114300.t1"; gene_id "Ledus.S2G114300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6681.t1 is derived from g4124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33188324	33188620	.	+	.	Ledus.S1G410200
Ledus.S1	AUGUSTUS	transcript	33188324	33188620	.	+	.	transcript_id "Ledus.S1G410200.t1"; gene_id "Ledus.S1G410200"
Ledus.S1	AUGUSTUS	start_codon	33188324	33188326	.	+	0	transcript_id "Ledus.S1G410200.t1"; gene_id "Ledus.S1G410200"
Ledus.S1	AUGUSTUS	CDS	33188324	33188620	0.92	+	0	transcript_id "Ledus.S1G410200.t1"; gene_id "Ledus.S1G410200"
Ledus.S1	AUGUSTUS	exon	33188324	33188620	.	+	.	transcript_id "Ledus.S1G410200.t1"; gene_id "Ledus.S1G410200"
Ledus.S1	AUGUSTUS	stop_codon	33188621	33188623	.	+	0	transcript_id "Ledus.S1G410200.t1"; gene_id "Ledus.S1G410200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg854.t1 is derived from g7715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5686503	5695514	.	+	.	Ledus.S2G073600
Ledus.S2	AUGUSTUS	transcript	5686503	5695514	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	start_codon	5686503	5686505	.	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5686503	5686551	0.99	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5686503	5686551	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5686552	5686640	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5686641	5686735	1	+	2	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5686641	5686735	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5686736	5686871	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5686872	5687089	1	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5686872	5687089	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5687090	5687205	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5687206	5687263	1	+	1	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5687206	5687263	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5687264	5687347	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5687348	5687429	1	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5687348	5687429	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5687430	5687500	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5687501	5687847	1	+	2	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5687501	5687847	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5687848	5687965	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5687966	5688074	0.95	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5687966	5688074	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5688075	5688160	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5688161	5688776	0.99	+	2	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5688161	5688776	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5688777	5688923	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5688924	5689056	1	+	1	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5688924	5689056	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5689057	5689131	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5689132	5689200	1	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5689132	5689200	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5689201	5689372	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5689373	5689584	1	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5689373	5689584	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5689585	5689691	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5689692	5689935	0.97	+	1	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5689692	5689935	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5689936	5690087	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5690088	5690261	0.96	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5690088	5690261	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5690262	5690375	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5690376	5690765	0.76	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5690376	5690765	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5690766	5690868	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5690869	5691300	0.74	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5690869	5691300	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5691301	5691385	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5691386	5691505	1	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5691386	5691505	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5691506	5691605	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5691606	5692085	0.79	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5691606	5692085	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5692086	5692208	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5692209	5692750	0.65	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5692209	5692750	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5692751	5692870	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5692871	5693378	0.81	+	1	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5692871	5693378	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5693379	5693539	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5693540	5693608	1	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5693540	5693608	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5693609	5693709	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5693710	5693814	1	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5693710	5693814	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5693815	5693907	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5693908	5694120	1	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5693908	5694120	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5694121	5694211	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5694212	5694475	0.98	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5694212	5694475	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5694476	5694563	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5694564	5694613	1	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5694564	5694613	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5694614	5694696	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5694697	5694806	1	+	1	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5694697	5694806	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5694807	5694894	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5694895	5694977	1	+	2	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5694895	5694977	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5694978	5695051	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5695052	5695264	1	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5695052	5695264	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	intron	5695265	5695340	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	CDS	5695341	5695514	1	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	exon	5695341	5695514	.	+	.	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
Ledus.S2	AUGUSTUS	stop_codon	5695515	5695517	.	+	0	transcript_id "Ledus.S2G073600.t1"; gene_id "Ledus.S2G073600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6790.t1 is derived from g4234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34160930	34161478	.	+	.	Ledus.S1G421100
Ledus.S1	AUGUSTUS	transcript	34160930	34161478	.	+	.	transcript_id "Ledus.S1G421100.t1"; gene_id "Ledus.S1G421100"
Ledus.S1	AUGUSTUS	start_codon	34160930	34160932	.	+	0	transcript_id "Ledus.S1G421100.t1"; gene_id "Ledus.S1G421100"
Ledus.S1	AUGUSTUS	CDS	34160930	34161478	0.33	+	0	transcript_id "Ledus.S1G421100.t1"; gene_id "Ledus.S1G421100"
Ledus.S1	AUGUSTUS	exon	34160930	34161478	.	+	.	transcript_id "Ledus.S1G421100.t1"; gene_id "Ledus.S1G421100"
Ledus.S1	AUGUSTUS	stop_codon	34161479	34161481	.	+	0	transcript_id "Ledus.S1G421100.t1"; gene_id "Ledus.S1G421100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5735.t1 is derived from g3174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26369071	26372176	.	-	.	Ledus.S1G315600
Ledus.S1	AUGUSTUS	transcript	26369071	26372176	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	stop_codon	26369068	26369070	.	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26369071	26369259	1	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26369071	26369259	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26369260	26369348	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26369349	26369438	1	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26369349	26369438	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26369439	26369517	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26369518	26369599	1	-	1	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26369518	26369599	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26369600	26369742	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26369743	26369789	1	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26369743	26369789	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26369790	26369901	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26369902	26369958	1	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26369902	26369958	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26369959	26370024	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26370025	26370090	0.99	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26370025	26370090	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26370091	26370197	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26370198	26370219	0.63	-	1	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26370198	26370219	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26370220	26370392	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26370393	26370505	1	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26370393	26370505	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26370506	26370594	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26370595	26370663	1	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26370595	26370663	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26370664	26370877	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26370878	26371000	0.99	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26370878	26371000	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26371001	26371107	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26371108	26371197	1	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26371108	26371197	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26371198	26371285	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26371286	26371327	0.85	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26371286	26371327	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26371328	26371431	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26371432	26371519	0.58	-	1	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26371432	26371519	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26371520	26371653	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26371654	26371869	0.95	-	1	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26371654	26371869	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	intron	26371870	26372093	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	CDS	26372094	26372176	0.86	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	exon	26372094	26372176	.	-	.	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
Ledus.S1	AUGUSTUS	start_codon	26372174	26372176	.	-	0	transcript_id "Ledus.S1G315600.t1"; gene_id "Ledus.S1G315600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg223.t1 is derived from g7084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	966257	971368	.	-	.	Ledus.S2G010500
Ledus.S2	AUGUSTUS	transcript	966257	971368	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	stop_codon	966254	966256	.	-	0	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	CDS	966257	966286	1	-	0	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	exon	966257	966286	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	intron	966287	966376	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	CDS	966377	966441	1	-	2	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	exon	966377	966441	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	intron	966442	966520	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	CDS	966521	967493	1	-	0	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	exon	966521	967493	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	intron	967494	967595	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	CDS	967596	968205	0.53	-	1	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	exon	967596	968205	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	intron	968206	968281	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	CDS	968282	970063	0.99	-	1	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	exon	968282	970063	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	intron	970064	970365	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	CDS	970366	970587	0.81	-	1	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	exon	970366	970587	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	intron	970588	970727	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	CDS	970728	971368	0.9	-	0	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	exon	970728	971368	.	-	.	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
Ledus.S2	AUGUSTUS	start_codon	971366	971368	.	-	0	transcript_id "Ledus.S2G010500.t1"; gene_id "Ledus.S2G010500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1467.t1 is derived from g8328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10351409	10355681	.	+	.	Ledus.S2G134900
Ledus.S2	AUGUSTUS	transcript	10351409	10355681	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	start_codon	10351409	10351411	.	+	0	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	CDS	10351409	10351486	0.74	+	0	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	exon	10351409	10351486	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	intron	10351487	10351626	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	CDS	10351627	10351691	1	+	0	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	exon	10351627	10351691	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	intron	10351692	10351821	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	CDS	10351822	10351851	1	+	1	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	exon	10351822	10351851	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	intron	10351852	10351953	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	CDS	10351954	10352202	1	+	1	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	exon	10351954	10352202	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	intron	10352203	10352415	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	CDS	10352416	10354981	0.87	+	1	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	exon	10352416	10354981	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	intron	10354982	10355113	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	CDS	10355114	10355296	1	+	0	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	exon	10355114	10355296	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	intron	10355297	10355400	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	CDS	10355401	10355469	1	+	0	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	exon	10355401	10355469	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	intron	10355470	10355564	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	CDS	10355565	10355681	0.98	+	0	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	exon	10355565	10355681	.	+	.	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
Ledus.S2	AUGUSTUS	stop_codon	10355682	10355684	.	+	0	transcript_id "Ledus.S2G134900.t1"; gene_id "Ledus.S2G134900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2990.t1 is derived from g425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5184622	5185533	.	-	.	Ledus.S1G041100
Ledus.S1	AUGUSTUS	transcript	5184622	5185533	.	-	.	transcript_id "Ledus.S1G041100.t1"; gene_id "Ledus.S1G041100"
Ledus.S1	AUGUSTUS	stop_codon	5184619	5184621	.	-	0	transcript_id "Ledus.S1G041100.t1"; gene_id "Ledus.S1G041100"
Ledus.S1	AUGUSTUS	CDS	5184622	5184930	1	-	0	transcript_id "Ledus.S1G041100.t1"; gene_id "Ledus.S1G041100"
Ledus.S1	AUGUSTUS	exon	5184622	5184930	.	-	.	transcript_id "Ledus.S1G041100.t1"; gene_id "Ledus.S1G041100"
Ledus.S1	AUGUSTUS	intron	5184931	5185005	.	-	.	transcript_id "Ledus.S1G041100.t1"; gene_id "Ledus.S1G041100"
Ledus.S1	AUGUSTUS	CDS	5185006	5185533	1	-	0	transcript_id "Ledus.S1G041100.t1"; gene_id "Ledus.S1G041100"
Ledus.S1	AUGUSTUS	exon	5185006	5185533	.	-	.	transcript_id "Ledus.S1G041100.t1"; gene_id "Ledus.S1G041100"
Ledus.S1	AUGUSTUS	start_codon	5185531	5185533	.	-	0	transcript_id "Ledus.S1G041100.t1"; gene_id "Ledus.S1G041100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8441.t1 is derived from g13113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11702717	11704004	.	-	.	Ledus.S5G121900
Ledus.S5	AUGUSTUS	transcript	11702717	11704004	.	-	.	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	stop_codon	11702714	11702716	.	-	0	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	CDS	11702717	11702803	0.99	-	0	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	exon	11702717	11702803	.	-	.	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	intron	11702804	11702906	.	-	.	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	CDS	11702907	11702975	0.99	-	0	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	exon	11702907	11702975	.	-	.	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	intron	11702976	11703086	.	-	.	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	CDS	11703087	11703212	0.98	-	0	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	exon	11703087	11703212	.	-	.	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	intron	11703213	11703315	.	-	.	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	CDS	11703316	11703477	1	-	0	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	exon	11703316	11703477	.	-	.	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	intron	11703478	11703594	.	-	.	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	CDS	11703595	11703660	0.73	-	0	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	exon	11703595	11703660	.	-	.	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	intron	11703661	11703797	.	-	.	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	CDS	11703798	11704004	0.72	-	0	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	exon	11703798	11704004	.	-	.	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
Ledus.S5	AUGUSTUS	start_codon	11704002	11704004	.	-	0	transcript_id "Ledus.S5G121900.t1"; gene_id "Ledus.S5G121900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg583.t1 is derived from g7444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3451341	3453227	.	+	.	Ledus.S2G046500
Ledus.S2	AUGUSTUS	transcript	3451341	3453227	.	+	.	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	start_codon	3451341	3451343	.	+	0	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	CDS	3451341	3451691	1	+	0	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	exon	3451341	3451691	.	+	.	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	intron	3451692	3451922	.	+	.	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	CDS	3451923	3452035	1	+	0	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	exon	3451923	3452035	.	+	.	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	intron	3452036	3452120	.	+	.	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	CDS	3452121	3452208	1	+	1	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	exon	3452121	3452208	.	+	.	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	intron	3452209	3452378	.	+	.	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	CDS	3452379	3452452	0.95	+	0	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	exon	3452379	3452452	.	+	.	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	intron	3452453	3452566	.	+	.	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	CDS	3452567	3453227	0.57	+	1	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	exon	3452567	3453227	.	+	.	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
Ledus.S2	AUGUSTUS	stop_codon	3453228	3453230	.	+	0	transcript_id "Ledus.S2G046500.t1"; gene_id "Ledus.S2G046500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4491.t1 is derived from g1927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17356039	17357964	.	-	.	Ledus.S1G191200
Ledus.S1	AUGUSTUS	transcript	17356039	17357964	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	stop_codon	17356036	17356038	.	-	0	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	CDS	17356039	17356110	0.34	-	0	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	exon	17356039	17356110	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	intron	17356111	17356215	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	CDS	17356216	17356284	1	-	0	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	exon	17356216	17356284	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	intron	17356285	17356464	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	CDS	17356465	17356569	1	-	0	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	exon	17356465	17356569	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	intron	17356570	17356770	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	CDS	17356771	17356839	1	-	0	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	exon	17356771	17356839	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	intron	17356840	17356994	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	CDS	17356995	17357090	1	-	0	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	exon	17356995	17357090	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	intron	17357091	17357231	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	CDS	17357232	17357283	0.98	-	1	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	exon	17357232	17357283	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	intron	17357284	17357391	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	CDS	17357392	17357474	1	-	0	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	exon	17357392	17357474	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	intron	17357475	17357559	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	CDS	17357560	17357738	0.96	-	2	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	exon	17357560	17357738	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	intron	17357739	17357831	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	CDS	17357832	17357964	0.99	-	0	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	exon	17357832	17357964	.	-	.	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
Ledus.S1	AUGUSTUS	start_codon	17357962	17357964	.	-	0	transcript_id "Ledus.S1G191200.t1"; gene_id "Ledus.S1G191200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1577.t1 is derived from g8438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11051907	11053326	.	-	.	Ledus.S2G145900
Ledus.S2	AUGUSTUS	transcript	11051907	11053326	.	-	.	transcript_id "Ledus.S2G145900.t1"; gene_id "Ledus.S2G145900"
Ledus.S2	AUGUSTUS	stop_codon	11051904	11051906	.	-	0	transcript_id "Ledus.S2G145900.t1"; gene_id "Ledus.S2G145900"
Ledus.S2	AUGUSTUS	CDS	11051907	11051958	0.91	-	1	transcript_id "Ledus.S2G145900.t1"; gene_id "Ledus.S2G145900"
Ledus.S2	AUGUSTUS	exon	11051907	11051958	.	-	.	transcript_id "Ledus.S2G145900.t1"; gene_id "Ledus.S2G145900"
Ledus.S2	AUGUSTUS	intron	11051959	11053021	.	-	.	transcript_id "Ledus.S2G145900.t1"; gene_id "Ledus.S2G145900"
Ledus.S2	AUGUSTUS	CDS	11053022	11053326	0.04	-	0	transcript_id "Ledus.S2G145900.t1"; gene_id "Ledus.S2G145900"
Ledus.S2	AUGUSTUS	exon	11053022	11053326	.	-	.	transcript_id "Ledus.S2G145900.t1"; gene_id "Ledus.S2G145900"
Ledus.S2	AUGUSTUS	start_codon	11053324	11053326	.	-	0	transcript_id "Ledus.S2G145900.t1"; gene_id "Ledus.S2G145900"
# This transcript jg6868.t2 is derived from g4312.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6869.t1 is derived from g4313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34832867	34835662	.	-	.	Ledus.S1G429000
Ledus.S1	AUGUSTUS	transcript	34832867	34835662	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	stop_codon	34832864	34832866	.	-	0	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	CDS	34832867	34833060	0.8	-	2	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	exon	34832867	34833060	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	intron	34833061	34833157	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	CDS	34833158	34833266	1	-	0	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	exon	34833158	34833266	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	intron	34833267	34833355	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	CDS	34833356	34833427	1	-	0	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	exon	34833356	34833427	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	intron	34833428	34833519	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	CDS	34833520	34833784	1	-	1	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	exon	34833520	34833784	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	intron	34833785	34833911	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	CDS	34833912	34834231	1	-	0	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	exon	34833912	34834231	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	intron	34834232	34834310	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	CDS	34834311	34834451	1	-	0	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	exon	34834311	34834451	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	intron	34834452	34834541	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	CDS	34834542	34834677	1	-	1	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	exon	34834542	34834677	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	intron	34834678	34834825	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	CDS	34834826	34835016	1	-	0	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	exon	34834826	34835016	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	intron	34835017	34835140	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	CDS	34835141	34835507	0.96	-	1	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	exon	34835141	34835507	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	intron	34835508	34835612	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	CDS	34835613	34835662	0.58	-	0	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	exon	34835613	34835662	.	-	.	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
Ledus.S1	AUGUSTUS	start_codon	34835660	34835662	.	-	0	transcript_id "Ledus.S1G429000.t1"; gene_id "Ledus.S1G429000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2304.t1 is derived from g9167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17106723	17107157	.	-	.	Ledus.S2G218600
Ledus.S2	AUGUSTUS	transcript	17106723	17107157	.	-	.	transcript_id "Ledus.S2G218600.t1"; gene_id "Ledus.S2G218600"
Ledus.S2	AUGUSTUS	stop_codon	17106720	17106722	.	-	0	transcript_id "Ledus.S2G218600.t1"; gene_id "Ledus.S2G218600"
Ledus.S2	AUGUSTUS	CDS	17106723	17107157	0.99	-	0	transcript_id "Ledus.S2G218600.t1"; gene_id "Ledus.S2G218600"
Ledus.S2	AUGUSTUS	exon	17106723	17107157	.	-	.	transcript_id "Ledus.S2G218600.t1"; gene_id "Ledus.S2G218600"
Ledus.S2	AUGUSTUS	start_codon	17107155	17107157	.	-	0	transcript_id "Ledus.S2G218600.t1"; gene_id "Ledus.S2G218600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3678.t1 is derived from g1114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10624434	10625328	.	+	.	Ledus.S1G109900
Ledus.S1	AUGUSTUS	transcript	10624434	10625328	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	start_codon	10624434	10624436	.	+	0	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	CDS	10624434	10624472	0.67	+	0	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	exon	10624434	10624472	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	intron	10624473	10624541	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	CDS	10624542	10624604	0.98	+	0	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	exon	10624542	10624604	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	intron	10624605	10624719	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	CDS	10624720	10624773	1	+	0	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	exon	10624720	10624773	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	intron	10624774	10624864	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	CDS	10624865	10624918	1	+	0	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	exon	10624865	10624918	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	intron	10624919	10624994	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	CDS	10624995	10625048	1	+	0	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	exon	10624995	10625048	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	intron	10625049	10625133	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	CDS	10625134	10625199	1	+	0	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	exon	10625134	10625199	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	intron	10625200	10625295	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	CDS	10625296	10625328	1	+	0	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	exon	10625296	10625328	.	+	.	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
Ledus.S1	AUGUSTUS	stop_codon	10625329	10625331	.	+	0	transcript_id "Ledus.S1G109900.t1"; gene_id "Ledus.S1G109900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1490.t1 is derived from g8351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10566093	10568463	.	-	.	Ledus.S2G137200
Ledus.S2	AUGUSTUS	transcript	10566093	10568463	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	stop_codon	10566090	10566092	.	-	0	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	CDS	10566093	10566239	0.93	-	0	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	exon	10566093	10566239	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	intron	10566240	10566327	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	CDS	10566328	10566456	0.98	-	0	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	exon	10566328	10566456	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	intron	10566457	10566543	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	CDS	10566544	10566742	1	-	1	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	exon	10566544	10566742	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	intron	10566743	10566834	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	CDS	10566835	10566983	0.99	-	0	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	exon	10566835	10566983	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	intron	10566984	10567147	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	CDS	10567148	10567255	0.99	-	0	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	exon	10567148	10567255	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	intron	10567256	10567389	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	CDS	10567390	10567509	0.91	-	0	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	exon	10567390	10567509	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	intron	10567510	10567607	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	CDS	10567608	10567683	0.99	-	1	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	exon	10567608	10567683	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	intron	10567684	10567784	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	CDS	10567785	10567870	0.94	-	0	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	exon	10567785	10567870	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	intron	10567871	10567951	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	CDS	10567952	10567981	0.98	-	0	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	exon	10567952	10567981	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	intron	10567982	10568088	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	CDS	10568089	10568170	0.85	-	1	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	exon	10568089	10568170	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	intron	10568171	10568258	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	CDS	10568259	10568333	0.84	-	1	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	exon	10568259	10568333	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	intron	10568334	10568449	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	CDS	10568450	10568463	0.61	-	0	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	exon	10568450	10568463	.	-	.	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
Ledus.S2	AUGUSTUS	start_codon	10568461	10568463	.	-	0	transcript_id "Ledus.S2G137200.t1"; gene_id "Ledus.S2G137200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9044.t1 is derived from g10074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4118203	4118586	.	-	.	Ledus.S3G052100
Ledus.S3	AUGUSTUS	transcript	4118203	4118586	.	-	.	transcript_id "Ledus.S3G052100.t1"; gene_id "Ledus.S3G052100"
Ledus.S3	AUGUSTUS	stop_codon	4118200	4118202	.	-	0	transcript_id "Ledus.S3G052100.t1"; gene_id "Ledus.S3G052100"
Ledus.S3	AUGUSTUS	CDS	4118203	4118586	0.32	-	0	transcript_id "Ledus.S3G052100.t1"; gene_id "Ledus.S3G052100"
Ledus.S3	AUGUSTUS	exon	4118203	4118586	.	-	.	transcript_id "Ledus.S3G052100.t1"; gene_id "Ledus.S3G052100"
Ledus.S3	AUGUSTUS	start_codon	4118584	4118586	.	-	0	transcript_id "Ledus.S3G052100.t1"; gene_id "Ledus.S3G052100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1513.t1 is derived from g8374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10653249	10655276	.	+	.	Ledus.S2G139500
Ledus.S2	AUGUSTUS	transcript	10653249	10655276	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	start_codon	10653249	10653251	.	+	0	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	CDS	10653249	10653435	0.34	+	0	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	exon	10653249	10653435	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	intron	10653436	10653673	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	CDS	10653674	10653738	1	+	2	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	exon	10653674	10653738	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	intron	10653739	10653853	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	CDS	10653854	10653902	0.99	+	0	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	exon	10653854	10653902	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	intron	10653903	10654089	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	CDS	10654090	10654184	1	+	2	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	exon	10654090	10654184	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	intron	10654185	10654271	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	CDS	10654272	10654357	1	+	0	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	exon	10654272	10654357	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	intron	10654358	10654567	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	CDS	10654568	10654627	1	+	1	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	exon	10654568	10654627	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	intron	10654628	10654733	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	CDS	10654734	10654815	1	+	1	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	exon	10654734	10654815	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	intron	10654816	10654918	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	CDS	10654919	10655032	0.96	+	0	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	exon	10654919	10655032	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	intron	10655033	10655111	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	CDS	10655112	10655276	1	+	0	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	exon	10655112	10655276	.	+	.	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
Ledus.S2	AUGUSTUS	stop_codon	10655277	10655279	.	+	0	transcript_id "Ledus.S2G139500.t1"; gene_id "Ledus.S2G139500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5240.t1 is derived from g2679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22634743	22635416	.	+	.	Ledus.S1G266100
Ledus.S1	AUGUSTUS	transcript	22634743	22635416	.	+	.	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	start_codon	22634743	22634745	.	+	0	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	CDS	22634743	22634838	0.99	+	0	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	exon	22634743	22634838	.	+	.	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	intron	22634839	22634928	.	+	.	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	CDS	22634929	22635048	0.88	+	0	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	exon	22634929	22635048	.	+	.	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	intron	22635049	22635194	.	+	.	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	CDS	22635195	22635309	0.88	+	0	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	exon	22635195	22635309	.	+	.	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	intron	22635310	22635399	.	+	.	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	CDS	22635400	22635416	0.92	+	2	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	exon	22635400	22635416	.	+	.	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
Ledus.S1	AUGUSTUS	stop_codon	22635417	22635419	.	+	0	transcript_id "Ledus.S1G266100.t1"; gene_id "Ledus.S1G266100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7254.t1 is derived from g11925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	495267	499313	.	-	.	Ledus.S5G003200
Ledus.S5	AUGUSTUS	transcript	495267	499313	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	stop_codon	495264	495266	.	-	0	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	CDS	495267	497322	0.97	-	1	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	exon	495267	497322	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	intron	497323	497414	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	CDS	497415	497749	1	-	0	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	exon	497415	497749	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	intron	497750	497841	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	CDS	497842	497987	1	-	2	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	exon	497842	497987	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	intron	497988	498094	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	CDS	498095	498327	0.95	-	1	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	exon	498095	498327	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	intron	498328	498417	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	CDS	498418	498580	0.74	-	2	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	exon	498418	498580	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	intron	498581	498655	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	CDS	498656	498774	1	-	1	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	exon	498656	498774	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	intron	498775	498863	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	CDS	498864	498979	0.99	-	0	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	exon	498864	498979	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	intron	498980	499136	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	CDS	499137	499313	1	-	0	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	exon	499137	499313	.	-	.	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
Ledus.S5	AUGUSTUS	start_codon	499311	499313	.	-	0	transcript_id "Ledus.S5G003200.t1"; gene_id "Ledus.S5G003200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1118.t1 is derived from g7979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7660148	7660681	.	-	.	Ledus.S2G100000
Ledus.S2	AUGUSTUS	transcript	7660148	7660681	.	-	.	transcript_id "Ledus.S2G100000.t1"; gene_id "Ledus.S2G100000"
Ledus.S2	AUGUSTUS	stop_codon	7660145	7660147	.	-	0	transcript_id "Ledus.S2G100000.t1"; gene_id "Ledus.S2G100000"
Ledus.S2	AUGUSTUS	CDS	7660148	7660223	0.84	-	1	transcript_id "Ledus.S2G100000.t1"; gene_id "Ledus.S2G100000"
Ledus.S2	AUGUSTUS	exon	7660148	7660223	.	-	.	transcript_id "Ledus.S2G100000.t1"; gene_id "Ledus.S2G100000"
Ledus.S2	AUGUSTUS	intron	7660224	7660487	.	-	.	transcript_id "Ledus.S2G100000.t1"; gene_id "Ledus.S2G100000"
Ledus.S2	AUGUSTUS	CDS	7660488	7660681	0.49	-	0	transcript_id "Ledus.S2G100000.t1"; gene_id "Ledus.S2G100000"
Ledus.S2	AUGUSTUS	exon	7660488	7660681	.	-	.	transcript_id "Ledus.S2G100000.t1"; gene_id "Ledus.S2G100000"
Ledus.S2	AUGUSTUS	start_codon	7660679	7660681	.	-	0	transcript_id "Ledus.S2G100000.t1"; gene_id "Ledus.S2G100000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg12817.t1 is derived from g6439.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15034441	15039560	.	+	.	Ledus.S4G197300
Ledus.S4	AUGUSTUS	transcript	15034441	15039560	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	start_codon	15034441	15034443	.	+	0	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15034441	15034456	0.57	+	0	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15034441	15034456	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15034457	15034779	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15034780	15034793	0.96	+	2	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15034780	15034793	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15034794	15034952	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15034953	15035090	0.96	+	0	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15034953	15035090	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15035091	15035587	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15035588	15035620	1	+	0	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15035588	15035620	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15035621	15035835	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15035836	15036133	0.95	+	0	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15035836	15036133	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15036134	15036414	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15036415	15036654	0.94	+	2	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15036415	15036654	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15036655	15036804	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15036805	15036895	0.9	+	2	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15036805	15036895	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15036896	15037218	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15037219	15037770	0.99	+	1	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15037219	15037770	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15037771	15037856	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15037857	15038047	1	+	1	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15037857	15038047	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15038048	15038784	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15038785	15039150	0.52	+	2	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15038785	15039150	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15039151	15039270	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15039271	15039370	0.52	+	2	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15039271	15039370	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15039371	15039544	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15039545	15039560	0.52	+	1	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15039545	15039560	.	+	.	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	stop_codon	15039561	15039563	.	+	0	transcript_id "Ledus.S4G197300.t1"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	transcript	15034441	15039560	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	start_codon	15034441	15034443	.	+	0	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15034441	15034456	0.66	+	0	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15034441	15034456	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15034457	15034736	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15034737	15034793	0.68	+	2	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15034737	15034793	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15034794	15034965	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15034966	15035090	0.84	+	2	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15034966	15035090	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15035091	15035587	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15035588	15035620	1	+	0	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15035588	15035620	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15035621	15035835	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15035836	15036133	0.92	+	0	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15035836	15036133	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15036134	15036414	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15036415	15036654	0.97	+	2	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15036415	15036654	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15036655	15036887	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15036888	15036895	0.98	+	2	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15036888	15036895	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15036896	15037204	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15037205	15037770	0.95	+	0	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15037205	15037770	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15037771	15037856	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15037857	15038047	1	+	1	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15037857	15038047	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15038048	15038784	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15038785	15039150	0.53	+	2	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15038785	15039150	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15039151	15039270	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15039271	15039370	0.53	+	2	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15039271	15039370	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15039371	15039544	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15039545	15039560	0.53	+	1	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15039545	15039560	.	+	.	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	stop_codon	15039561	15039563	.	+	0	transcript_id "Ledus.S4G197300.t2"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	transcript	15034441	15039560	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	start_codon	15034441	15034443	.	+	0	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15034441	15034456	0.59	+	0	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15034441	15034456	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15034457	15034736	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15034737	15034793	0.68	+	2	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15034737	15034793	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15034794	15034965	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15034966	15035090	0.79	+	2	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15034966	15035090	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15035091	15035587	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15035588	15035620	1	+	0	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15035588	15035620	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15035621	15035835	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15035836	15036133	0.96	+	0	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15035836	15036133	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15036134	15036414	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15036415	15036654	0.96	+	2	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15036415	15036654	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15036655	15036804	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15036805	15036895	0.93	+	2	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15036805	15036895	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15036896	15037218	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15037219	15037770	0.98	+	1	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15037219	15037770	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15037771	15037856	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15037857	15038047	1	+	1	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15037857	15038047	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15038048	15038784	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15038785	15039150	0.49	+	2	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15038785	15039150	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15039151	15039270	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15039271	15039370	0.49	+	2	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15039271	15039370	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	intron	15039371	15039544	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	CDS	15039545	15039560	0.49	+	1	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	exon	15039545	15039560	.	+	.	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
Ledus.S4	AUGUSTUS	stop_codon	15039561	15039563	.	+	0	transcript_id "Ledus.S4G197300.t3"; gene_id "Ledus.S4G197300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg464.t1 is derived from g7325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2731212	2733050	.	-	.	Ledus.S2G034600
Ledus.S2	AUGUSTUS	transcript	2731212	2733050	.	-	.	transcript_id "Ledus.S2G034600.t1"; gene_id "Ledus.S2G034600"
Ledus.S2	AUGUSTUS	stop_codon	2731209	2731211	.	-	0	transcript_id "Ledus.S2G034600.t1"; gene_id "Ledus.S2G034600"
Ledus.S2	AUGUSTUS	CDS	2731212	2733050	1	-	0	transcript_id "Ledus.S2G034600.t1"; gene_id "Ledus.S2G034600"
Ledus.S2	AUGUSTUS	exon	2731212	2733050	.	-	.	transcript_id "Ledus.S2G034600.t1"; gene_id "Ledus.S2G034600"
Ledus.S2	AUGUSTUS	start_codon	2733048	2733050	.	-	0	transcript_id "Ledus.S2G034600.t1"; gene_id "Ledus.S2G034600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9509.t1 is derived from g10539.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7507554	7515799	.	-	.	Ledus.S3G098600
Ledus.S3	AUGUSTUS	transcript	7507554	7515799	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	stop_codon	7507551	7507553	.	-	0	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7507554	7507991	0.93	-	0	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7507554	7507991	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7507992	7508104	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7508105	7508277	1	-	2	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7508105	7508277	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7508278	7508434	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7508435	7508481	1	-	1	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7508435	7508481	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7508482	7508678	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7508679	7508872	1	-	0	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7508679	7508872	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7508873	7510377	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7510378	7510789	0.99	-	1	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7510378	7510789	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7510790	7511255	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7511256	7511320	0.78	-	0	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7511256	7511320	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7511321	7511918	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7511919	7511984	0.84	-	0	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7511919	7511984	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7511985	7512070	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7512071	7512241	1	-	0	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7512071	7512241	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7512242	7512335	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7512336	7512501	1	-	1	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7512336	7512501	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7512502	7512608	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7512609	7512756	0.98	-	2	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7512609	7512756	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7512757	7512879	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7512880	7512925	1	-	0	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7512880	7512925	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7512926	7513029	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7513030	7513159	0.84	-	1	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7513030	7513159	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7513160	7513263	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7513264	7513382	0.85	-	0	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7513264	7513382	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7513383	7513532	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7513533	7513603	1	-	2	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7513533	7513603	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7513604	7513737	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7513738	7513890	1	-	2	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7513738	7513890	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7513891	7514092	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7514093	7514188	1	-	2	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7514093	7514188	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7514189	7514268	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7514269	7514523	1	-	2	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7514269	7514523	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7514524	7514660	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7514661	7514824	1	-	1	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7514661	7514824	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7514825	7514901	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7514902	7515124	1	-	2	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7514902	7515124	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7515125	7515203	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7515204	7515315	1	-	0	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7515204	7515315	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7515316	7515407	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7515408	7515548	1	-	0	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7515408	7515548	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7515549	7515631	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7515632	7515799	1	-	0	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7515632	7515799	.	-	.	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	start_codon	7515797	7515799	.	-	0	transcript_id "Ledus.S3G098600.t1"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	transcript	7511965	7515799	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	stop_codon	7511962	7511964	.	-	0	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7511965	7511984	0.76	-	2	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7511965	7511984	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7511985	7512063	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7512064	7512241	0.8	-	0	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7512064	7512241	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7512242	7512335	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7512336	7512501	1	-	1	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7512336	7512501	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7512502	7512608	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7512609	7512756	0.98	-	2	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7512609	7512756	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7512757	7512879	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7512880	7512925	1	-	0	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7512880	7512925	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7512926	7513029	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7513030	7513159	0.78	-	1	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7513030	7513159	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7513160	7513263	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7513264	7513382	0.84	-	0	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7513264	7513382	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7513383	7513532	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7513533	7513603	1	-	2	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7513533	7513603	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7513604	7513737	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7513738	7513890	1	-	2	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7513738	7513890	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7513891	7514092	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7514093	7514188	1	-	2	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7514093	7514188	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7514189	7514268	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7514269	7514523	0.99	-	2	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7514269	7514523	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7514524	7514660	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7514661	7514824	1	-	1	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7514661	7514824	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7514825	7514901	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7514902	7515124	1	-	2	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7514902	7515124	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7515125	7515203	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7515204	7515315	1	-	0	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7515204	7515315	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7515316	7515407	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7515408	7515548	1	-	0	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7515408	7515548	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7515549	7515631	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7515632	7515799	1	-	0	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7515632	7515799	.	-	.	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	start_codon	7515797	7515799	.	-	0	transcript_id "Ledus.S3G098600.t2"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	transcript	7507554	7515799	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	stop_codon	7507551	7507553	.	-	0	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7507554	7507991	0.94	-	0	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7507554	7507991	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7507992	7508104	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7508105	7508277	1	-	2	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7508105	7508277	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7508278	7508434	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7508435	7508481	1	-	1	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7508435	7508481	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7508482	7508678	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7508679	7508872	1	-	0	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7508679	7508872	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7508873	7510377	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7510378	7510789	1	-	1	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7510378	7510789	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7510790	7511255	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7511256	7511320	0.69	-	0	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7511256	7511320	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7511321	7511918	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7511919	7511984	0.71	-	0	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7511919	7511984	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7511985	7512070	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7512071	7512241	1	-	0	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7512071	7512241	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7512242	7512335	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7512336	7512501	1	-	1	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7512336	7512501	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7512502	7512608	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7512609	7512756	0.97	-	2	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7512609	7512756	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7512757	7512879	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7512880	7512925	0.99	-	0	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7512880	7512925	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7512926	7513029	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7513030	7513159	0.83	-	1	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7513030	7513159	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7513160	7513263	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7513264	7513382	0.87	-	0	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7513264	7513382	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7513383	7513532	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7513533	7513603	1	-	2	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7513533	7513603	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7513604	7513737	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7513738	7513890	1	-	2	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7513738	7513890	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7513891	7514092	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7514093	7514188	1	-	2	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7514093	7514188	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7514189	7514268	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7514269	7514523	1	-	2	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7514269	7514523	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7514524	7514660	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7514661	7514824	1	-	1	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7514661	7514824	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7514825	7514901	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7514902	7514986	0.35	-	2	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7514902	7514986	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7514987	7515080	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7515081	7515134	0.34	-	2	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7515081	7515134	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7515135	7515203	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7515204	7515315	0.98	-	0	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7515204	7515315	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7515316	7515407	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7515408	7515548	1	-	0	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7515408	7515548	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	intron	7515549	7515631	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	CDS	7515632	7515799	1	-	0	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	exon	7515632	7515799	.	-	.	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
Ledus.S3	AUGUSTUS	start_codon	7515797	7515799	.	-	0	transcript_id "Ledus.S3G098600.t3"; gene_id "Ledus.S3G098600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1648.t1 is derived from g8509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11638716	11642223	.	-	.	Ledus.S2G153000
Ledus.S2	AUGUSTUS	transcript	11638716	11642223	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	stop_codon	11638713	11638715	.	-	0	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11638716	11638928	0.99	-	0	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11638716	11638928	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11638929	11639202	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11639203	11639490	1	-	0	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11639203	11639490	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11639491	11639592	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11639593	11639940	0.98	-	0	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11639593	11639940	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11639941	11640073	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11640074	11640220	1	-	0	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11640074	11640220	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11640221	11640382	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11640383	11640649	1	-	0	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11640383	11640649	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11640650	11640929	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11640930	11641723	0.73	-	2	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11640930	11641723	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11641724	11641846	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11641847	11641875	0.9	-	1	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11641847	11641875	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11641876	11642155	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11642156	11642223	0.96	-	0	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11642156	11642223	.	-	.	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	start_codon	11642221	11642223	.	-	0	transcript_id "Ledus.S2G153000.t1"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	transcript	11638716	11642121	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	stop_codon	11638713	11638715	.	-	0	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11638716	11638928	0.99	-	0	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11638716	11638928	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11638929	11639202	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11639203	11639490	1	-	0	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11639203	11639490	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11639491	11639592	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11639593	11639940	0.99	-	0	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11639593	11639940	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11639941	11640073	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11640074	11640220	1	-	0	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11640074	11640220	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11640221	11640382	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11640383	11640649	1	-	0	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11640383	11640649	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11640650	11640929	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11640930	11641723	0.76	-	2	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11640930	11641723	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11641724	11641865	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11641866	11641875	0.68	-	0	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11641866	11641875	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	intron	11641876	11642082	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	CDS	11642083	11642121	0.73	-	0	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	exon	11642083	11642121	.	-	.	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
Ledus.S2	AUGUSTUS	start_codon	11642119	11642121	.	-	0	transcript_id "Ledus.S2G153000.t2"; gene_id "Ledus.S2G153000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6338.t1 is derived from g3781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30620496	30620726	.	-	.	Ledus.S1G375900
Ledus.S1	AUGUSTUS	transcript	30620496	30620726	.	-	.	transcript_id "Ledus.S1G375900.t1"; gene_id "Ledus.S1G375900"
Ledus.S1	AUGUSTUS	stop_codon	30620493	30620495	.	-	0	transcript_id "Ledus.S1G375900.t1"; gene_id "Ledus.S1G375900"
Ledus.S1	AUGUSTUS	CDS	30620496	30620726	0.99	-	0	transcript_id "Ledus.S1G375900.t1"; gene_id "Ledus.S1G375900"
Ledus.S1	AUGUSTUS	exon	30620496	30620726	.	-	.	transcript_id "Ledus.S1G375900.t1"; gene_id "Ledus.S1G375900"
Ledus.S1	AUGUSTUS	start_codon	30620724	30620726	.	-	0	transcript_id "Ledus.S1G375900.t1"; gene_id "Ledus.S1G375900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11818.t1 is derived from g5437.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6969312	6970244	.	-	.	Ledus.S4G097400
Ledus.S4	AUGUSTUS	transcript	6969718	6970244	.	-	.	transcript_id "Ledus.S4G097400.t1"; gene_id "Ledus.S4G097400"
Ledus.S4	AUGUSTUS	stop_codon	6969715	6969717	.	-	0	transcript_id "Ledus.S4G097400.t1"; gene_id "Ledus.S4G097400"
Ledus.S4	AUGUSTUS	CDS	6969718	6969733	0.83	-	1	transcript_id "Ledus.S4G097400.t1"; gene_id "Ledus.S4G097400"
Ledus.S4	AUGUSTUS	exon	6969718	6969733	.	-	.	transcript_id "Ledus.S4G097400.t1"; gene_id "Ledus.S4G097400"
Ledus.S4	AUGUSTUS	intron	6969734	6969825	.	-	.	transcript_id "Ledus.S4G097400.t1"; gene_id "Ledus.S4G097400"
Ledus.S4	AUGUSTUS	CDS	6969826	6970244	0.65	-	0	transcript_id "Ledus.S4G097400.t1"; gene_id "Ledus.S4G097400"
Ledus.S4	AUGUSTUS	exon	6969826	6970244	.	-	.	transcript_id "Ledus.S4G097400.t1"; gene_id "Ledus.S4G097400"
Ledus.S4	AUGUSTUS	start_codon	6970242	6970244	.	-	0	transcript_id "Ledus.S4G097400.t1"; gene_id "Ledus.S4G097400"
Ledus.S4	AUGUSTUS	transcript	6969312	6970244	.	-	.	transcript_id "Ledus.S4G097400.t2"; gene_id "Ledus.S4G097400"
Ledus.S4	AUGUSTUS	stop_codon	6969309	6969311	.	-	0	transcript_id "Ledus.S4G097400.t2"; gene_id "Ledus.S4G097400"
Ledus.S4	AUGUSTUS	CDS	6969312	6970244	0.92	-	0	transcript_id "Ledus.S4G097400.t2"; gene_id "Ledus.S4G097400"
Ledus.S4	AUGUSTUS	exon	6969312	6970244	.	-	.	transcript_id "Ledus.S4G097400.t2"; gene_id "Ledus.S4G097400"
Ledus.S4	AUGUSTUS	start_codon	6970242	6970244	.	-	0	transcript_id "Ledus.S4G097400.t2"; gene_id "Ledus.S4G097400"
# This transcript jg12834.t1 is derived from g9534.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C16	AUGUSTUS	gene	51076	51858	.	+	.	Ledus.C16G000400
Ledus.C16	AUGUSTUS	transcript	51076	51858	.	+	.	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	start_codon	51076	51078	.	+	0	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	CDS	51076	51128	0.68	+	0	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	exon	51076	51128	.	+	.	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	intron	51129	51278	.	+	.	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	CDS	51279	51331	0.73	+	1	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	exon	51279	51331	.	+	.	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	intron	51332	51424	.	+	.	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	CDS	51425	51437	0.74	+	2	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	exon	51425	51437	.	+	.	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	intron	51438	51525	.	+	.	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	CDS	51526	51628	1	+	1	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	exon	51526	51628	.	+	.	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	intron	51629	51719	.	+	.	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	CDS	51720	51742	0.85	+	0	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	exon	51720	51742	.	+	.	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	intron	51743	51830	.	+	.	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	CDS	51831	51858	1	+	1	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	exon	51831	51858	.	+	.	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
Ledus.C16	AUGUSTUS	stop_codon	51859	51861	.	+	0	transcript_id "Ledus.C16G000400.t1"; gene_id "Ledus.C16G000400"
# This transcript jg9593.t2 is derived from g10623.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9594.t1 is derived from g10624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8175928	8176698	.	-	.	Ledus.S3G107100
Ledus.S3	AUGUSTUS	transcript	8175928	8176698	.	-	.	transcript_id "Ledus.S3G107100.t1"; gene_id "Ledus.S3G107100"
Ledus.S3	AUGUSTUS	stop_codon	8175925	8175927	.	-	0	transcript_id "Ledus.S3G107100.t1"; gene_id "Ledus.S3G107100"
Ledus.S3	AUGUSTUS	CDS	8175928	8176698	0.23	-	0	transcript_id "Ledus.S3G107100.t1"; gene_id "Ledus.S3G107100"
Ledus.S3	AUGUSTUS	exon	8175928	8176698	.	-	.	transcript_id "Ledus.S3G107100.t1"; gene_id "Ledus.S3G107100"
Ledus.S3	AUGUSTUS	start_codon	8176696	8176698	.	-	0	transcript_id "Ledus.S3G107100.t1"; gene_id "Ledus.S3G107100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12895.t1 is derived from g4387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	127282	129507	.	-	.	Ledus.C9G000300
Ledus.C9	AUGUSTUS	transcript	127282	129507	.	-	.	transcript_id "Ledus.C9G000300.t1"; gene_id "Ledus.C9G000300"
Ledus.C9	AUGUSTUS	stop_codon	127279	127281	.	-	0	transcript_id "Ledus.C9G000300.t1"; gene_id "Ledus.C9G000300"
Ledus.C9	AUGUSTUS	CDS	127282	129507	0.65	-	0	transcript_id "Ledus.C9G000300.t1"; gene_id "Ledus.C9G000300"
Ledus.C9	AUGUSTUS	exon	127282	129507	.	-	.	transcript_id "Ledus.C9G000300.t1"; gene_id "Ledus.C9G000300"
Ledus.C9	AUGUSTUS	start_codon	129505	129507	.	-	0	transcript_id "Ledus.C9G000300.t1"; gene_id "Ledus.C9G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg466.t1 is derived from g7327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2733748	2734346	.	+	.	Ledus.S2G034800
Ledus.S2	AUGUSTUS	transcript	2733748	2734346	.	+	.	transcript_id "Ledus.S2G034800.t1"; gene_id "Ledus.S2G034800"
Ledus.S2	AUGUSTUS	start_codon	2733748	2733750	.	+	0	transcript_id "Ledus.S2G034800.t1"; gene_id "Ledus.S2G034800"
Ledus.S2	AUGUSTUS	CDS	2733748	2734034	0.66	+	0	transcript_id "Ledus.S2G034800.t1"; gene_id "Ledus.S2G034800"
Ledus.S2	AUGUSTUS	exon	2733748	2734034	.	+	.	transcript_id "Ledus.S2G034800.t1"; gene_id "Ledus.S2G034800"
Ledus.S2	AUGUSTUS	intron	2734035	2734177	.	+	.	transcript_id "Ledus.S2G034800.t1"; gene_id "Ledus.S2G034800"
Ledus.S2	AUGUSTUS	CDS	2734178	2734346	0.28	+	1	transcript_id "Ledus.S2G034800.t1"; gene_id "Ledus.S2G034800"
Ledus.S2	AUGUSTUS	exon	2734178	2734346	.	+	.	transcript_id "Ledus.S2G034800.t1"; gene_id "Ledus.S2G034800"
Ledus.S2	AUGUSTUS	stop_codon	2734347	2734349	.	+	0	transcript_id "Ledus.S2G034800.t1"; gene_id "Ledus.S2G034800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8761.t1 is derived from g9791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1870382	1873505	.	+	.	Ledus.S3G023800
Ledus.S3	AUGUSTUS	transcript	1870382	1873505	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	start_codon	1870382	1870384	.	+	0	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1870382	1870570	0.9	+	0	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1870382	1870570	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1870571	1870892	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1870893	1870934	0.99	+	0	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1870893	1870934	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1870935	1871098	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1871099	1871171	0.54	+	0	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1871099	1871171	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1871172	1871284	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1871285	1871343	1	+	2	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1871285	1871343	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1871344	1871427	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1871428	1871520	1	+	0	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1871428	1871520	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1871521	1871709	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1871710	1871802	1	+	0	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1871710	1871802	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1871803	1871948	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1871949	1872039	1	+	0	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1871949	1872039	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1872040	1872181	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1872182	1872237	0.99	+	2	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1872182	1872237	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1872238	1872338	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1872339	1872395	0.99	+	0	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1872339	1872395	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1872396	1872545	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1872546	1872586	1	+	0	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1872546	1872586	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1872587	1872674	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1872675	1872742	1	+	1	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1872675	1872742	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1872743	1872827	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1872828	1872884	1	+	2	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1872828	1872884	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1872885	1872972	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1872973	1873090	0.73	+	2	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1872973	1873090	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1873091	1873239	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1873240	1873294	0.99	+	1	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1873240	1873294	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	intron	1873295	1873475	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	CDS	1873476	1873505	1	+	0	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	exon	1873476	1873505	.	+	.	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
Ledus.S3	AUGUSTUS	stop_codon	1873506	1873508	.	+	0	transcript_id "Ledus.S3G023800.t1"; gene_id "Ledus.S3G023800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2573.t1 is derived from g9436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19101714	19102315	.	+	.	Ledus.S2G245500
Ledus.S2	AUGUSTUS	transcript	19101714	19102315	.	+	.	transcript_id "Ledus.S2G245500.t1"; gene_id "Ledus.S2G245500"
Ledus.S2	AUGUSTUS	start_codon	19101714	19101716	.	+	0	transcript_id "Ledus.S2G245500.t1"; gene_id "Ledus.S2G245500"
Ledus.S2	AUGUSTUS	CDS	19101714	19101896	0.74	+	0	transcript_id "Ledus.S2G245500.t1"; gene_id "Ledus.S2G245500"
Ledus.S2	AUGUSTUS	exon	19101714	19101896	.	+	.	transcript_id "Ledus.S2G245500.t1"; gene_id "Ledus.S2G245500"
Ledus.S2	AUGUSTUS	intron	19101897	19102015	.	+	.	transcript_id "Ledus.S2G245500.t1"; gene_id "Ledus.S2G245500"
Ledus.S2	AUGUSTUS	CDS	19102016	19102315	0.42	+	0	transcript_id "Ledus.S2G245500.t1"; gene_id "Ledus.S2G245500"
Ledus.S2	AUGUSTUS	exon	19102016	19102315	.	+	.	transcript_id "Ledus.S2G245500.t1"; gene_id "Ledus.S2G245500"
Ledus.S2	AUGUSTUS	stop_codon	19102316	19102318	.	+	0	transcript_id "Ledus.S2G245500.t1"; gene_id "Ledus.S2G245500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg6551.t1 is derived from g3994.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32265294	32268551	.	+	.	Ledus.S1G397200
Ledus.S1	AUGUSTUS	transcript	32265294	32268551	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	start_codon	32265294	32265296	.	+	0	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32265294	32265453	0.83	+	0	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32265294	32265453	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32265454	32265685	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32265686	32265873	1	+	2	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32265686	32265873	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32265874	32265969	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32265970	32266016	1	+	0	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32265970	32266016	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266017	32266131	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266132	32266226	1	+	1	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266132	32266226	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266227	32266307	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266308	32266390	1	+	2	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266308	32266390	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266391	32266677	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266678	32266746	1	+	0	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266678	32266746	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266747	32266900	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266901	32267086	1	+	0	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266901	32267086	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32267087	32267233	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32267234	32267368	1	+	0	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32267234	32267368	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32267369	32267521	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32267522	32267656	1	+	0	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32267522	32267656	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32267657	32267805	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32267806	32267876	1	+	0	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32267806	32267876	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32267877	32268027	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32268028	32268108	1	+	1	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32268028	32268108	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32268109	32268206	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32268207	32268348	1	+	1	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32268207	32268348	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32268349	32268443	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32268444	32268551	0.36	+	0	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32268444	32268551	.	+	.	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	stop_codon	32268552	32268554	.	+	0	transcript_id "Ledus.S1G397200.t1"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	transcript	32265294	32268551	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	start_codon	32265294	32265296	.	+	0	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32265294	32265453	0.87	+	0	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32265294	32265453	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32265454	32265685	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32265686	32265873	1	+	2	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32265686	32265873	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32265874	32265969	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32265970	32266016	0.96	+	0	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32265970	32266016	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266017	32266131	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266132	32266226	1	+	1	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266132	32266226	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266227	32266307	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266308	32266390	1	+	2	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266308	32266390	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266391	32266677	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266678	32266746	1	+	0	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266678	32266746	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266747	32266900	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266901	32267086	1	+	0	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266901	32267086	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32267087	32267233	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32267234	32267368	1	+	0	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32267234	32267368	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32267369	32267521	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32267522	32267656	1	+	0	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32267522	32267656	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32267657	32267805	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32267806	32267876	1	+	0	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32267806	32267876	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32267877	32268030	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32268031	32268108	1	+	1	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32268031	32268108	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32268109	32268206	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32268207	32268348	1	+	1	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32268207	32268348	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32268349	32268443	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32268444	32268551	0.26	+	0	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32268444	32268551	.	+	.	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	stop_codon	32268552	32268554	.	+	0	transcript_id "Ledus.S1G397200.t2"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	transcript	32265294	32268551	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	start_codon	32265294	32265296	.	+	0	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32265294	32265453	0.85	+	0	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32265294	32265453	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32265454	32265685	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32265686	32265873	1	+	2	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32265686	32265873	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32265874	32265969	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32265970	32266016	0.96	+	0	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32265970	32266016	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266017	32266131	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266132	32266226	1	+	1	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266132	32266226	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266227	32266307	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266308	32266313	0.62	+	2	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266308	32266313	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266314	32266438	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266439	32266521	0.56	+	2	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266439	32266521	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266522	32266677	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266678	32266746	1	+	0	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266678	32266746	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32266747	32266900	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32266901	32267086	1	+	0	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32266901	32267086	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32267087	32267233	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32267234	32267368	1	+	0	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32267234	32267368	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32267369	32267521	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32267522	32267656	1	+	0	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32267522	32267656	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32267657	32267805	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32267806	32267876	1	+	0	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32267806	32267876	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32267877	32268027	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32268028	32268108	1	+	1	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32268028	32268108	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32268109	32268206	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32268207	32268348	1	+	1	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32268207	32268348	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	intron	32268349	32268443	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	CDS	32268444	32268551	0.32	+	0	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	exon	32268444	32268551	.	+	.	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
Ledus.S1	AUGUSTUS	stop_codon	32268552	32268554	.	+	0	transcript_id "Ledus.S1G397200.t3"; gene_id "Ledus.S1G397200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7932.t1 is derived from g12603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7911514	7913185	.	+	.	Ledus.S5G071000
Ledus.S5	AUGUSTUS	transcript	7911514	7913185	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	start_codon	7911514	7911516	.	+	0	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	CDS	7911514	7911696	0.46	+	0	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	exon	7911514	7911696	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	intron	7911697	7911897	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	CDS	7911898	7911981	0.55	+	0	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	exon	7911898	7911981	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	intron	7911982	7912217	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	CDS	7912218	7912265	0.55	+	0	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	exon	7912218	7912265	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	intron	7912266	7912405	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	CDS	7912406	7912480	0.32	+	0	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	exon	7912406	7912480	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	intron	7912481	7912686	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	CDS	7912687	7912728	0.32	+	0	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	exon	7912687	7912728	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	intron	7912729	7912890	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	CDS	7912891	7912901	0.99	+	0	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	exon	7912891	7912901	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	intron	7912902	7912977	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	CDS	7912978	7913019	0.99	+	1	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	exon	7912978	7913019	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	intron	7913020	7913184	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	CDS	7913185	7913185	0.99	+	1	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	exon	7913185	7913185	.	+	.	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
Ledus.S5	AUGUSTUS	stop_codon	7913186	7913188	.	+	0	transcript_id "Ledus.S5G071000.t1"; gene_id "Ledus.S5G071000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5827.t1 is derived from g3269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27171325	27173836	.	+	.	Ledus.S1G324800
Ledus.S1	AUGUSTUS	transcript	27171325	27173836	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	start_codon	27171325	27171327	.	+	0	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	CDS	27171325	27171423	0.29	+	0	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	exon	27171325	27171423	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	intron	27171424	27171541	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	CDS	27171542	27171598	0.36	+	0	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	exon	27171542	27171598	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	intron	27171599	27171684	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	CDS	27171685	27171721	0.46	+	0	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	exon	27171685	27171721	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	intron	27171722	27171965	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	CDS	27171966	27172231	1	+	2	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	exon	27171966	27172231	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	intron	27172232	27172408	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	CDS	27172409	27172531	1	+	0	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	exon	27172409	27172531	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	intron	27172532	27172617	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	CDS	27172618	27172711	1	+	0	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	exon	27172618	27172711	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	intron	27172712	27172850	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	CDS	27172851	27172933	1	+	2	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	exon	27172851	27172933	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	intron	27172934	27173202	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	CDS	27173203	27173292	1	+	0	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	exon	27173203	27173292	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	intron	27173293	27173383	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	CDS	27173384	27173836	0.99	+	0	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	exon	27173384	27173836	.	+	.	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
Ledus.S1	AUGUSTUS	stop_codon	27173837	27173839	.	+	0	transcript_id "Ledus.S1G324800.t1"; gene_id "Ledus.S1G324800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg646.t1 is derived from g7507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3862099	3863965	.	-	.	Ledus.S2G052800
Ledus.S2	AUGUSTUS	transcript	3862099	3863965	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	stop_codon	3862096	3862098	.	-	0	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	CDS	3862099	3862220	1	-	2	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	exon	3862099	3862220	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	intron	3862221	3862303	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	CDS	3862304	3862393	1	-	2	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	exon	3862304	3862393	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	intron	3862394	3862488	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	CDS	3862489	3862551	1	-	2	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	exon	3862489	3862551	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	intron	3862552	3862711	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	CDS	3862712	3862783	1	-	2	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	exon	3862712	3862783	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	intron	3862784	3862955	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	CDS	3862956	3863067	1	-	0	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	exon	3862956	3863067	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	intron	3863068	3863182	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	CDS	3863183	3863389	0.74	-	0	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	exon	3863183	3863389	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	intron	3863390	3863540	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	CDS	3863541	3863609	0.95	-	0	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	exon	3863541	3863609	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	intron	3863610	3863707	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	CDS	3863708	3863965	0.86	-	0	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	exon	3863708	3863965	.	-	.	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
Ledus.S2	AUGUSTUS	start_codon	3863963	3863965	.	-	0	transcript_id "Ledus.S2G052800.t1"; gene_id "Ledus.S2G052800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6948.t1 is derived from g6479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	127769	130959	.	-	.	Ledus.C7G000900
Ledus.C7	AUGUSTUS	transcript	127769	130959	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	stop_codon	127766	127768	.	-	0	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	CDS	127769	127890	0.98	-	2	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	exon	127769	127890	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	intron	127891	128017	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	CDS	128018	128666	1	-	0	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	exon	128018	128666	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	intron	128667	128896	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	CDS	128897	129005	1	-	1	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	exon	128897	129005	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	intron	129006	129167	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	CDS	129168	129569	1	-	1	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	exon	129168	129569	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	intron	129570	129775	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	CDS	129776	129870	1	-	0	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	exon	129776	129870	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	intron	129871	130000	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	CDS	130001	130191	1	-	2	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	exon	130001	130191	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	intron	130192	130442	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	CDS	130443	130554	1	-	0	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	exon	130443	130554	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	intron	130555	130824	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	CDS	130825	130959	0.99	-	0	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	exon	130825	130959	.	-	.	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
Ledus.C7	AUGUSTUS	start_codon	130957	130959	.	-	0	transcript_id "Ledus.C7G000900.t1"; gene_id "Ledus.C7G000900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1526.t1 is derived from g8387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10805665	10806076	.	-	.	Ledus.S2G140800
Ledus.S2	AUGUSTUS	transcript	10805665	10806076	.	-	.	transcript_id "Ledus.S2G140800.t1"; gene_id "Ledus.S2G140800"
Ledus.S2	AUGUSTUS	stop_codon	10805662	10805664	.	-	0	transcript_id "Ledus.S2G140800.t1"; gene_id "Ledus.S2G140800"
Ledus.S2	AUGUSTUS	CDS	10805665	10805845	0.87	-	1	transcript_id "Ledus.S2G140800.t1"; gene_id "Ledus.S2G140800"
Ledus.S2	AUGUSTUS	exon	10805665	10805845	.	-	.	transcript_id "Ledus.S2G140800.t1"; gene_id "Ledus.S2G140800"
Ledus.S2	AUGUSTUS	intron	10805846	10805957	.	-	.	transcript_id "Ledus.S2G140800.t1"; gene_id "Ledus.S2G140800"
Ledus.S2	AUGUSTUS	CDS	10805958	10806076	0.5	-	0	transcript_id "Ledus.S2G140800.t1"; gene_id "Ledus.S2G140800"
Ledus.S2	AUGUSTUS	exon	10805958	10806076	.	-	.	transcript_id "Ledus.S2G140800.t1"; gene_id "Ledus.S2G140800"
Ledus.S2	AUGUSTUS	start_codon	10806074	10806076	.	-	0	transcript_id "Ledus.S2G140800.t1"; gene_id "Ledus.S2G140800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1567.t1 is derived from g8428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10974097	10974641	.	+	.	Ledus.S2G144900
Ledus.S2	AUGUSTUS	transcript	10974097	10974641	.	+	.	transcript_id "Ledus.S2G144900.t1"; gene_id "Ledus.S2G144900"
Ledus.S2	AUGUSTUS	start_codon	10974097	10974099	.	+	0	transcript_id "Ledus.S2G144900.t1"; gene_id "Ledus.S2G144900"
Ledus.S2	AUGUSTUS	CDS	10974097	10974192	0.44	+	0	transcript_id "Ledus.S2G144900.t1"; gene_id "Ledus.S2G144900"
Ledus.S2	AUGUSTUS	exon	10974097	10974192	.	+	.	transcript_id "Ledus.S2G144900.t1"; gene_id "Ledus.S2G144900"
Ledus.S2	AUGUSTUS	intron	10974193	10974291	.	+	.	transcript_id "Ledus.S2G144900.t1"; gene_id "Ledus.S2G144900"
Ledus.S2	AUGUSTUS	CDS	10974292	10974418	0.59	+	0	transcript_id "Ledus.S2G144900.t1"; gene_id "Ledus.S2G144900"
Ledus.S2	AUGUSTUS	exon	10974292	10974418	.	+	.	transcript_id "Ledus.S2G144900.t1"; gene_id "Ledus.S2G144900"
Ledus.S2	AUGUSTUS	intron	10974419	10974507	.	+	.	transcript_id "Ledus.S2G144900.t1"; gene_id "Ledus.S2G144900"
Ledus.S2	AUGUSTUS	CDS	10974508	10974641	0.62	+	2	transcript_id "Ledus.S2G144900.t1"; gene_id "Ledus.S2G144900"
Ledus.S2	AUGUSTUS	exon	10974508	10974641	.	+	.	transcript_id "Ledus.S2G144900.t1"; gene_id "Ledus.S2G144900"
Ledus.S2	AUGUSTUS	stop_codon	10974642	10974644	.	+	0	transcript_id "Ledus.S2G144900.t1"; gene_id "Ledus.S2G144900"
# This transcript jg11968.t2 is derived from g5587.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11969.t1 is derived from g5588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8137124	8138567	.	-	.	Ledus.S4G112500
Ledus.S4	AUGUSTUS	transcript	8137124	8138567	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	stop_codon	8137121	8137123	.	-	0	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	CDS	8137124	8137233	1	-	2	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	exon	8137124	8137233	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	intron	8137234	8137316	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	CDS	8137317	8137395	1	-	0	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	exon	8137317	8137395	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	intron	8137396	8137476	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	CDS	8137477	8137582	1	-	1	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	exon	8137477	8137582	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	intron	8137583	8137660	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	CDS	8137661	8137781	1	-	2	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	exon	8137661	8137781	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	intron	8137782	8137880	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	CDS	8137881	8137953	1	-	0	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	exon	8137881	8137953	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	intron	8137954	8138034	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	CDS	8138035	8138126	0.92	-	2	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	exon	8138035	8138126	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	intron	8138127	8138241	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	CDS	8138242	8138290	0.99	-	0	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	exon	8138242	8138290	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	intron	8138291	8138363	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	CDS	8138364	8138567	0.37	-	0	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	exon	8138364	8138567	.	-	.	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
Ledus.S4	AUGUSTUS	start_codon	8138565	8138567	.	-	0	transcript_id "Ledus.S4G112500.t1"; gene_id "Ledus.S4G112500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10956.t1 is derived from g4574.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	894714	895013	.	-	.	Ledus.S4G011200
Ledus.S4	AUGUSTUS	transcript	894714	895013	.	-	.	transcript_id "Ledus.S4G011200.t1"; gene_id "Ledus.S4G011200"
Ledus.S4	AUGUSTUS	stop_codon	894711	894713	.	-	0	transcript_id "Ledus.S4G011200.t1"; gene_id "Ledus.S4G011200"
Ledus.S4	AUGUSTUS	CDS	894714	895013	0.62	-	0	transcript_id "Ledus.S4G011200.t1"; gene_id "Ledus.S4G011200"
Ledus.S4	AUGUSTUS	exon	894714	895013	.	-	.	transcript_id "Ledus.S4G011200.t1"; gene_id "Ledus.S4G011200"
Ledus.S4	AUGUSTUS	start_codon	895011	895013	.	-	0	transcript_id "Ledus.S4G011200.t1"; gene_id "Ledus.S4G011200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7487.t1 is derived from g12158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3342627	3345031	.	+	.	Ledus.S5G026500
Ledus.S5	AUGUSTUS	transcript	3342627	3345031	.	+	.	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	start_codon	3342627	3342629	.	+	0	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	CDS	3342627	3342675	0.83	+	0	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	exon	3342627	3342675	.	+	.	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	intron	3342676	3342886	.	+	.	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	CDS	3342887	3343693	0.98	+	2	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	exon	3342887	3343693	.	+	.	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	intron	3343694	3343777	.	+	.	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	CDS	3343778	3344124	1	+	2	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	exon	3343778	3344124	.	+	.	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	intron	3344125	3344221	.	+	.	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	CDS	3344222	3345031	1	+	0	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	exon	3344222	3345031	.	+	.	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
Ledus.S5	AUGUSTUS	stop_codon	3345032	3345034	.	+	0	transcript_id "Ledus.S5G026500.t1"; gene_id "Ledus.S5G026500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg845.t1 is derived from g7706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5649155	5649766	.	+	.	Ledus.S2G072700
Ledus.S2	AUGUSTUS	transcript	5649155	5649766	.	+	.	transcript_id "Ledus.S2G072700.t1"; gene_id "Ledus.S2G072700"
Ledus.S2	AUGUSTUS	start_codon	5649155	5649157	.	+	0	transcript_id "Ledus.S2G072700.t1"; gene_id "Ledus.S2G072700"
Ledus.S2	AUGUSTUS	CDS	5649155	5649766	0.97	+	0	transcript_id "Ledus.S2G072700.t1"; gene_id "Ledus.S2G072700"
Ledus.S2	AUGUSTUS	exon	5649155	5649766	.	+	.	transcript_id "Ledus.S2G072700.t1"; gene_id "Ledus.S2G072700"
Ledus.S2	AUGUSTUS	stop_codon	5649767	5649769	.	+	0	transcript_id "Ledus.S2G072700.t1"; gene_id "Ledus.S2G072700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg3692.t1 is derived from g1128.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10940527	10942246	.	-	.	Ledus.S1G111300
Ledus.S1	AUGUSTUS	transcript	10941020	10942246	.	-	.	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	stop_codon	10941017	10941019	.	-	0	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941020	10941070	1	-	0	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941020	10941070	.	-	.	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941071	10941614	.	-	.	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941615	10941694	1	-	2	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941615	10941694	.	-	.	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941695	10941792	.	-	.	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941793	10941817	1	-	0	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941793	10941817	.	-	.	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941818	10941879	.	-	.	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941880	10941903	0.98	-	0	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941880	10941903	.	-	.	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941904	10941977	.	-	.	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941978	10942057	0.93	-	2	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941978	10942057	.	-	.	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10942058	10942185	.	-	.	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10942186	10942246	1	-	0	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10942186	10942246	.	-	.	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	start_codon	10942244	10942246	.	-	0	transcript_id "Ledus.S1G111300.t1"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	transcript	10941357	10942246	.	-	.	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	stop_codon	10941354	10941356	.	-	0	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941357	10941359	0.8	-	0	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941357	10941359	.	-	.	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941360	10941614	.	-	.	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941615	10941694	0.97	-	2	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941615	10941694	.	-	.	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941695	10941792	.	-	.	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941793	10941817	0.99	-	0	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941793	10941817	.	-	.	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941818	10941879	.	-	.	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941880	10941903	0.98	-	0	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941880	10941903	.	-	.	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941904	10941977	.	-	.	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941978	10942057	0.94	-	2	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941978	10942057	.	-	.	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10942058	10942185	.	-	.	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10942186	10942246	1	-	0	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10942186	10942246	.	-	.	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	start_codon	10942244	10942246	.	-	0	transcript_id "Ledus.S1G111300.t2"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	transcript	10940527	10942246	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	stop_codon	10940524	10940526	.	-	0	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10940527	10941000	0.43	-	0	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10940527	10941000	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941001	10941089	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941090	10941224	0.43	-	0	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941090	10941224	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941225	10941359	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941360	10941389	0.98	-	0	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941360	10941389	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941390	10941614	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941615	10941694	1	-	2	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941615	10941694	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941695	10941792	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941793	10941817	1	-	0	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941793	10941817	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941818	10941879	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941880	10941903	0.99	-	0	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941880	10941903	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10941904	10941977	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10941978	10942057	0.94	-	2	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10941978	10942057	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	intron	10942058	10942185	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	CDS	10942186	10942246	1	-	0	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	exon	10942186	10942246	.	-	.	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
Ledus.S1	AUGUSTUS	start_codon	10942244	10942246	.	-	0	transcript_id "Ledus.S1G111300.t3"; gene_id "Ledus.S1G111300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg192.t1 is derived from g7053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	720439	720684	.	-	.	Ledus.S2G007400
Ledus.S2	AUGUSTUS	transcript	720439	720684	.	-	.	transcript_id "Ledus.S2G007400.t1"; gene_id "Ledus.S2G007400"
Ledus.S2	AUGUSTUS	stop_codon	720436	720438	.	-	0	transcript_id "Ledus.S2G007400.t1"; gene_id "Ledus.S2G007400"
Ledus.S2	AUGUSTUS	CDS	720439	720684	0.95	-	0	transcript_id "Ledus.S2G007400.t1"; gene_id "Ledus.S2G007400"
Ledus.S2	AUGUSTUS	exon	720439	720684	.	-	.	transcript_id "Ledus.S2G007400.t1"; gene_id "Ledus.S2G007400"
Ledus.S2	AUGUSTUS	start_codon	720682	720684	.	-	0	transcript_id "Ledus.S2G007400.t1"; gene_id "Ledus.S2G007400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11410.t1 is derived from g5028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4108210	4111586	.	+	.	Ledus.S4G056600
Ledus.S4	AUGUSTUS	transcript	4108210	4111586	.	+	.	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	start_codon	4108210	4108212	.	+	0	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	CDS	4108210	4108374	0.63	+	0	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	exon	4108210	4108374	.	+	.	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	intron	4108375	4108538	.	+	.	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	CDS	4108539	4110035	0.58	+	0	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	exon	4108539	4110035	.	+	.	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	intron	4110036	4110151	.	+	.	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	CDS	4110152	4110455	0.81	+	0	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	exon	4110152	4110455	.	+	.	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	intron	4110456	4110596	.	+	.	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	CDS	4110597	4111334	0.68	+	2	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	exon	4110597	4111334	.	+	.	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	intron	4111335	4111515	.	+	.	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	CDS	4111516	4111586	0.68	+	2	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	exon	4111516	4111586	.	+	.	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
Ledus.S4	AUGUSTUS	stop_codon	4111587	4111589	.	+	0	transcript_id "Ledus.S4G056600.t1"; gene_id "Ledus.S4G056600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10207.t1 is derived from g11237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13573132	13574367	.	-	.	Ledus.S3G168400
Ledus.S3	AUGUSTUS	transcript	13573132	13574367	.	-	.	transcript_id "Ledus.S3G168400.t1"; gene_id "Ledus.S3G168400"
Ledus.S3	AUGUSTUS	stop_codon	13573129	13573131	.	-	0	transcript_id "Ledus.S3G168400.t1"; gene_id "Ledus.S3G168400"
Ledus.S3	AUGUSTUS	CDS	13573132	13574367	0.8	-	0	transcript_id "Ledus.S3G168400.t1"; gene_id "Ledus.S3G168400"
Ledus.S3	AUGUSTUS	exon	13573132	13574367	.	-	.	transcript_id "Ledus.S3G168400.t1"; gene_id "Ledus.S3G168400"
Ledus.S3	AUGUSTUS	start_codon	13574365	13574367	.	-	0	transcript_id "Ledus.S3G168400.t1"; gene_id "Ledus.S3G168400"
Ledus.S3	AUGUSTUS	transcript	13573132	13573935	.	-	.	transcript_id "Ledus.S3G168400.t2"; gene_id "Ledus.S3G168400"
Ledus.S3	AUGUSTUS	stop_codon	13573129	13573131	.	-	0	transcript_id "Ledus.S3G168400.t2"; gene_id "Ledus.S3G168400"
Ledus.S3	AUGUSTUS	CDS	13573132	13573935	0.7	-	0	transcript_id "Ledus.S3G168400.t2"; gene_id "Ledus.S3G168400"
Ledus.S3	AUGUSTUS	exon	13573132	13573935	.	-	.	transcript_id "Ledus.S3G168400.t2"; gene_id "Ledus.S3G168400"
Ledus.S3	AUGUSTUS	start_codon	13573933	13573935	.	-	0	transcript_id "Ledus.S3G168400.t2"; gene_id "Ledus.S3G168400"
# This transcript jg10528.t2 is derived from g11558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10529.t1 is derived from g11559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15950361	15951056	.	+	.	Ledus.S3G200600
Ledus.S3	AUGUSTUS	transcript	15950361	15951056	.	+	.	transcript_id "Ledus.S3G200600.t1"; gene_id "Ledus.S3G200600"
Ledus.S3	AUGUSTUS	start_codon	15950361	15950363	.	+	0	transcript_id "Ledus.S3G200600.t1"; gene_id "Ledus.S3G200600"
Ledus.S3	AUGUSTUS	CDS	15950361	15951056	0.91	+	0	transcript_id "Ledus.S3G200600.t1"; gene_id "Ledus.S3G200600"
Ledus.S3	AUGUSTUS	exon	15950361	15951056	.	+	.	transcript_id "Ledus.S3G200600.t1"; gene_id "Ledus.S3G200600"
Ledus.S3	AUGUSTUS	stop_codon	15951057	15951059	.	+	0	transcript_id "Ledus.S3G200600.t1"; gene_id "Ledus.S3G200600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5649.t1 is derived from g3088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25567969	25569561	.	+	.	Ledus.S1G307000
Ledus.S1	AUGUSTUS	transcript	25567969	25569561	.	+	.	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	start_codon	25567969	25567971	.	+	0	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	CDS	25567969	25568565	0.3	+	0	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	exon	25567969	25568565	.	+	.	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	intron	25568566	25568657	.	+	.	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	CDS	25568658	25568801	0.94	+	0	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	exon	25568658	25568801	.	+	.	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	intron	25568802	25568871	.	+	.	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	CDS	25568872	25568994	0.32	+	0	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	exon	25568872	25568994	.	+	.	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	intron	25568995	25569067	.	+	.	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	CDS	25569068	25569134	0.57	+	0	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	exon	25569068	25569134	.	+	.	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	intron	25569135	25569224	.	+	.	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	CDS	25569225	25569322	0.97	+	2	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	exon	25569225	25569322	.	+	.	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	intron	25569323	25569399	.	+	.	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	CDS	25569400	25569561	1	+	0	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	exon	25569400	25569561	.	+	.	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
Ledus.S1	AUGUSTUS	stop_codon	25569562	25569564	.	+	0	transcript_id "Ledus.S1G307000.t1"; gene_id "Ledus.S1G307000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2496.t1 is derived from g9359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18477072	18477602	.	+	.	Ledus.S2G237800
Ledus.S2	AUGUSTUS	transcript	18477072	18477602	.	+	.	transcript_id "Ledus.S2G237800.t1"; gene_id "Ledus.S2G237800"
Ledus.S2	AUGUSTUS	start_codon	18477072	18477074	.	+	0	transcript_id "Ledus.S2G237800.t1"; gene_id "Ledus.S2G237800"
Ledus.S2	AUGUSTUS	CDS	18477072	18477602	0.92	+	0	transcript_id "Ledus.S2G237800.t1"; gene_id "Ledus.S2G237800"
Ledus.S2	AUGUSTUS	exon	18477072	18477602	.	+	.	transcript_id "Ledus.S2G237800.t1"; gene_id "Ledus.S2G237800"
Ledus.S2	AUGUSTUS	stop_codon	18477603	18477605	.	+	0	transcript_id "Ledus.S2G237800.t1"; gene_id "Ledus.S2G237800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13040.t1 is derived from g6850.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3788979	3789599	.	-	.	Ledus.S6G010200
Ledus.S6	AUGUSTUS	transcript	3788979	3789599	.	-	.	transcript_id "Ledus.S6G010200.t1"; gene_id "Ledus.S6G010200"
Ledus.S6	AUGUSTUS	stop_codon	3788976	3788978	.	-	0	transcript_id "Ledus.S6G010200.t1"; gene_id "Ledus.S6G010200"
Ledus.S6	AUGUSTUS	CDS	3788979	3789197	0.75	-	0	transcript_id "Ledus.S6G010200.t1"; gene_id "Ledus.S6G010200"
Ledus.S6	AUGUSTUS	exon	3788979	3789197	.	-	.	transcript_id "Ledus.S6G010200.t1"; gene_id "Ledus.S6G010200"
Ledus.S6	AUGUSTUS	intron	3789198	3789284	.	-	.	transcript_id "Ledus.S6G010200.t1"; gene_id "Ledus.S6G010200"
Ledus.S6	AUGUSTUS	CDS	3789285	3789599	0.42	-	0	transcript_id "Ledus.S6G010200.t1"; gene_id "Ledus.S6G010200"
Ledus.S6	AUGUSTUS	exon	3789285	3789599	.	-	.	transcript_id "Ledus.S6G010200.t1"; gene_id "Ledus.S6G010200"
Ledus.S6	AUGUSTUS	start_codon	3789597	3789599	.	-	0	transcript_id "Ledus.S6G010200.t1"; gene_id "Ledus.S6G010200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1638.t1 is derived from g8499.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11509090	11512027	.	-	.	Ledus.S2G152000
Ledus.S2	AUGUSTUS	transcript	11509090	11512027	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	stop_codon	11509087	11509089	.	-	0	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	CDS	11509090	11509189	0.43	-	1	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	exon	11509090	11509189	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	intron	11509190	11509534	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	CDS	11509535	11509604	0.51	-	2	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	exon	11509535	11509604	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	intron	11509605	11509731	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	CDS	11509732	11509801	1	-	0	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	exon	11509732	11509801	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	intron	11509802	11510012	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	CDS	11510013	11510101	0.83	-	2	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	exon	11510013	11510101	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	intron	11510102	11510388	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	CDS	11510389	11510542	0.86	-	0	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	exon	11510389	11510542	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	intron	11510543	11510726	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	CDS	11510727	11510876	1	-	0	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	exon	11510727	11510876	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	intron	11510877	11510992	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	CDS	11510993	11511116	1	-	1	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	exon	11510993	11511116	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	intron	11511117	11511202	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	CDS	11511203	11511262	1	-	1	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	exon	11511203	11511262	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	intron	11511263	11511473	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	CDS	11511474	11511493	1	-	0	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	exon	11511474	11511493	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	intron	11511494	11511694	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	CDS	11511695	11511764	1	-	1	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	exon	11511695	11511764	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	intron	11511765	11511959	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	CDS	11511960	11512027	0.92	-	0	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	exon	11511960	11512027	.	-	.	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
Ledus.S2	AUGUSTUS	start_codon	11512025	11512027	.	-	0	transcript_id "Ledus.S2G152000.t1"; gene_id "Ledus.S2G152000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6563.t1 is derived from g4006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32417434	32420673	.	-	.	Ledus.S1G398400
Ledus.S1	AUGUSTUS	transcript	32417434	32420673	.	-	.	transcript_id "Ledus.S1G398400.t1"; gene_id "Ledus.S1G398400"
Ledus.S1	AUGUSTUS	stop_codon	32417431	32417433	.	-	0	transcript_id "Ledus.S1G398400.t1"; gene_id "Ledus.S1G398400"
Ledus.S1	AUGUSTUS	CDS	32417434	32420673	0.98	-	0	transcript_id "Ledus.S1G398400.t1"; gene_id "Ledus.S1G398400"
Ledus.S1	AUGUSTUS	exon	32417434	32420673	.	-	.	transcript_id "Ledus.S1G398400.t1"; gene_id "Ledus.S1G398400"
Ledus.S1	AUGUSTUS	start_codon	32420671	32420673	.	-	0	transcript_id "Ledus.S1G398400.t1"; gene_id "Ledus.S1G398400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10812.t1 is derived from g11844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17947502	17950765	.	+	.	Ledus.S3G228900
Ledus.S3	AUGUSTUS	transcript	17947502	17950765	.	+	.	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	start_codon	17947502	17947504	.	+	0	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	CDS	17947502	17947960	0.94	+	0	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	exon	17947502	17947960	.	+	.	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	intron	17947961	17948039	.	+	.	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	CDS	17948040	17948579	0.99	+	0	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	exon	17948040	17948579	.	+	.	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	intron	17948580	17948749	.	+	.	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	CDS	17948750	17949925	1	+	0	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	exon	17948750	17949925	.	+	.	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	intron	17949926	17950021	.	+	.	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	CDS	17950022	17950349	1	+	0	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	exon	17950022	17950349	.	+	.	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	intron	17950350	17950434	.	+	.	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	CDS	17950435	17950690	1	+	2	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	exon	17950435	17950690	.	+	.	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	intron	17950691	17950761	.	+	.	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	CDS	17950762	17950765	1	+	1	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	exon	17950762	17950765	.	+	.	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
Ledus.S3	AUGUSTUS	stop_codon	17950766	17950768	.	+	0	transcript_id "Ledus.S3G228900.t1"; gene_id "Ledus.S3G228900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4569.t1 is derived from g2006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17759734	17761713	.	-	.	Ledus.S1G199000
Ledus.S1	AUGUSTUS	transcript	17759734	17761713	.	-	.	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	stop_codon	17759731	17759733	.	-	0	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	CDS	17759734	17759783	0.99	-	2	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	exon	17759734	17759783	.	-	.	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	intron	17759784	17759926	.	-	.	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	CDS	17759927	17760215	0.29	-	0	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	exon	17759927	17760215	.	-	.	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	intron	17760216	17760626	.	-	.	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	CDS	17760627	17760698	0.25	-	0	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	exon	17760627	17760698	.	-	.	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	intron	17760699	17761088	.	-	.	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	CDS	17761089	17761199	0.67	-	0	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	exon	17761089	17761199	.	-	.	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	intron	17761200	17761503	.	-	.	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	CDS	17761504	17761713	0.99	-	0	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	exon	17761504	17761713	.	-	.	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
Ledus.S1	AUGUSTUS	start_codon	17761711	17761713	.	-	0	transcript_id "Ledus.S1G199000.t1"; gene_id "Ledus.S1G199000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6102.t1 is derived from g3545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28913601	28916669	.	-	.	Ledus.S1G352300
Ledus.S1	AUGUSTUS	transcript	28913601	28916669	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	stop_codon	28913598	28913600	.	-	0	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28913601	28913682	0.97	-	1	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28913601	28913682	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28913683	28913760	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28913761	28913881	1	-	2	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28913761	28913881	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28913882	28913974	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28913975	28914069	1	-	1	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28913975	28914069	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28914070	28914166	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28914167	28914288	1	-	0	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28914167	28914288	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28914289	28914376	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28914377	28914514	1	-	0	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28914377	28914514	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28914515	28914602	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28914603	28914766	1	-	2	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28914603	28914766	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28914767	28914865	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28914866	28914986	1	-	0	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28914866	28914986	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28914987	28915116	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28915117	28915216	1	-	1	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28915117	28915216	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28915217	28915298	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28915299	28915382	1	-	1	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28915299	28915382	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28915383	28915475	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28915476	28915537	1	-	0	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28915476	28915537	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28915538	28915625	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28915626	28915697	1	-	0	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28915626	28915697	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28915698	28915941	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28915942	28916148	1	-	0	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28915942	28916148	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28916149	28916410	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28916411	28916468	0.68	-	1	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28916411	28916468	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	intron	28916469	28916604	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	CDS	28916605	28916669	0.52	-	0	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	exon	28916605	28916669	.	-	.	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
Ledus.S1	AUGUSTUS	start_codon	28916667	28916669	.	-	0	transcript_id "Ledus.S1G352300.t1"; gene_id "Ledus.S1G352300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11636.t1 is derived from g5255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5699298	5700195	.	+	.	Ledus.S4G079200
Ledus.S4	AUGUSTUS	transcript	5699298	5700195	.	+	.	transcript_id "Ledus.S4G079200.t1"; gene_id "Ledus.S4G079200"
Ledus.S4	AUGUSTUS	start_codon	5699298	5699300	.	+	0	transcript_id "Ledus.S4G079200.t1"; gene_id "Ledus.S4G079200"
Ledus.S4	AUGUSTUS	CDS	5699298	5699608	0.76	+	0	transcript_id "Ledus.S4G079200.t1"; gene_id "Ledus.S4G079200"
Ledus.S4	AUGUSTUS	exon	5699298	5699608	.	+	.	transcript_id "Ledus.S4G079200.t1"; gene_id "Ledus.S4G079200"
Ledus.S4	AUGUSTUS	intron	5699609	5699690	.	+	.	transcript_id "Ledus.S4G079200.t1"; gene_id "Ledus.S4G079200"
Ledus.S4	AUGUSTUS	CDS	5699691	5700195	0.99	+	1	transcript_id "Ledus.S4G079200.t1"; gene_id "Ledus.S4G079200"
Ledus.S4	AUGUSTUS	exon	5699691	5700195	.	+	.	transcript_id "Ledus.S4G079200.t1"; gene_id "Ledus.S4G079200"
Ledus.S4	AUGUSTUS	stop_codon	5700196	5700198	.	+	0	transcript_id "Ledus.S4G079200.t1"; gene_id "Ledus.S4G079200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10131.t1 is derived from g11161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12959861	12961963	.	+	.	Ledus.S3G160800
Ledus.S3	AUGUSTUS	transcript	12959861	12961963	.	+	.	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	start_codon	12959861	12959863	.	+	0	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	CDS	12959861	12960036	0.69	+	0	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	exon	12959861	12960036	.	+	.	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	intron	12960037	12960212	.	+	.	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	CDS	12960213	12960741	1	+	1	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	exon	12960213	12960741	.	+	.	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	intron	12960742	12960843	.	+	.	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	CDS	12960844	12961255	0.97	+	0	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	exon	12960844	12961255	.	+	.	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	intron	12961256	12961394	.	+	.	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	CDS	12961395	12961414	0.98	+	2	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	exon	12961395	12961414	.	+	.	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	intron	12961415	12961894	.	+	.	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	CDS	12961895	12961963	0.99	+	0	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	exon	12961895	12961963	.	+	.	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
Ledus.S3	AUGUSTUS	stop_codon	12961964	12961966	.	+	0	transcript_id "Ledus.S3G160800.t1"; gene_id "Ledus.S3G160800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7164.t1 is derived from g6695.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1920039	1921813	.	-	.	Ledus.C7G022500
Ledus.C7	AUGUSTUS	transcript	1920039	1921813	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	stop_codon	1920036	1920038	.	-	0	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	CDS	1920039	1920146	0.93	-	0	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	exon	1920039	1920146	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	intron	1920147	1920298	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	CDS	1920299	1920344	1	-	1	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	exon	1920299	1920344	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	intron	1920345	1920426	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	CDS	1920427	1920574	1	-	2	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	exon	1920427	1920574	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	intron	1920575	1920646	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	CDS	1920647	1920761	1	-	0	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	exon	1920647	1920761	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	intron	1920762	1920842	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	CDS	1920843	1920928	1	-	2	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	exon	1920843	1920928	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	intron	1920929	1921013	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	CDS	1921014	1921101	1	-	0	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	exon	1921014	1921101	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	intron	1921102	1921196	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	CDS	1921197	1921378	1	-	2	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	exon	1921197	1921378	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	intron	1921379	1921463	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	CDS	1921464	1921585	1	-	1	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	exon	1921464	1921585	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	intron	1921586	1921670	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	CDS	1921671	1921813	0.95	-	0	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	exon	1921671	1921813	.	-	.	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
Ledus.C7	AUGUSTUS	start_codon	1921811	1921813	.	-	0	transcript_id "Ledus.C7G022500.t1"; gene_id "Ledus.C7G022500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2338.t1 is derived from g9201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17299235	17300265	.	-	.	Ledus.S2G222000
Ledus.S2	AUGUSTUS	transcript	17299235	17300265	.	-	.	transcript_id "Ledus.S2G222000.t1"; gene_id "Ledus.S2G222000"
Ledus.S2	AUGUSTUS	stop_codon	17299232	17299234	.	-	0	transcript_id "Ledus.S2G222000.t1"; gene_id "Ledus.S2G222000"
Ledus.S2	AUGUSTUS	CDS	17299235	17299601	1	-	1	transcript_id "Ledus.S2G222000.t1"; gene_id "Ledus.S2G222000"
Ledus.S2	AUGUSTUS	exon	17299235	17299601	.	-	.	transcript_id "Ledus.S2G222000.t1"; gene_id "Ledus.S2G222000"
Ledus.S2	AUGUSTUS	intron	17299602	17299700	.	-	.	transcript_id "Ledus.S2G222000.t1"; gene_id "Ledus.S2G222000"
Ledus.S2	AUGUSTUS	CDS	17299701	17300101	1	-	0	transcript_id "Ledus.S2G222000.t1"; gene_id "Ledus.S2G222000"
Ledus.S2	AUGUSTUS	exon	17299701	17300101	.	-	.	transcript_id "Ledus.S2G222000.t1"; gene_id "Ledus.S2G222000"
Ledus.S2	AUGUSTUS	intron	17300102	17300172	.	-	.	transcript_id "Ledus.S2G222000.t1"; gene_id "Ledus.S2G222000"
Ledus.S2	AUGUSTUS	CDS	17300173	17300265	0.95	-	0	transcript_id "Ledus.S2G222000.t1"; gene_id "Ledus.S2G222000"
Ledus.S2	AUGUSTUS	exon	17300173	17300265	.	-	.	transcript_id "Ledus.S2G222000.t1"; gene_id "Ledus.S2G222000"
Ledus.S2	AUGUSTUS	start_codon	17300263	17300265	.	-	0	transcript_id "Ledus.S2G222000.t1"; gene_id "Ledus.S2G222000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11123.t1 is derived from g4741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2046002	2046280	.	+	.	Ledus.S4G027900
Ledus.S4	AUGUSTUS	transcript	2046002	2046280	.	+	.	transcript_id "Ledus.S4G027900.t1"; gene_id "Ledus.S4G027900"
Ledus.S4	AUGUSTUS	start_codon	2046002	2046004	.	+	0	transcript_id "Ledus.S4G027900.t1"; gene_id "Ledus.S4G027900"
Ledus.S4	AUGUSTUS	CDS	2046002	2046280	0.36	+	0	transcript_id "Ledus.S4G027900.t1"; gene_id "Ledus.S4G027900"
Ledus.S4	AUGUSTUS	exon	2046002	2046280	.	+	.	transcript_id "Ledus.S4G027900.t1"; gene_id "Ledus.S4G027900"
Ledus.S4	AUGUSTUS	stop_codon	2046281	2046283	.	+	0	transcript_id "Ledus.S4G027900.t1"; gene_id "Ledus.S4G027900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7812.t1 is derived from g12483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6955886	6958337	.	+	.	Ledus.S5G059000
Ledus.S5	AUGUSTUS	transcript	6955886	6958337	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	start_codon	6955886	6955888	.	+	0	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	CDS	6955886	6956486	0.78	+	0	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	exon	6955886	6956486	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	intron	6956487	6956568	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	CDS	6956569	6956746	0.91	+	2	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	exon	6956569	6956746	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	intron	6956747	6956862	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	CDS	6956863	6957102	0.91	+	1	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	exon	6956863	6957102	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	intron	6957103	6957199	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	CDS	6957200	6957344	1	+	1	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	exon	6957200	6957344	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	intron	6957345	6957488	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	CDS	6957489	6957623	1	+	0	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	exon	6957489	6957623	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	intron	6957624	6957698	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	CDS	6957699	6957762	0.97	+	0	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	exon	6957699	6957762	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	intron	6957763	6957884	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	CDS	6957885	6957962	1	+	2	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	exon	6957885	6957962	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	intron	6957963	6958102	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	CDS	6958103	6958155	1	+	2	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	exon	6958103	6958155	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	intron	6958156	6958241	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	CDS	6958242	6958337	1	+	0	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	exon	6958242	6958337	.	+	.	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
Ledus.S5	AUGUSTUS	stop_codon	6958338	6958340	.	+	0	transcript_id "Ledus.S5G059000.t1"; gene_id "Ledus.S5G059000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5803.t1 is derived from g3245.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27017281	27021331	.	-	.	Ledus.S1G322400
Ledus.S1	AUGUSTUS	transcript	27017281	27021331	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	stop_codon	27017278	27017280	.	-	0	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27017281	27017350	1	-	1	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27017281	27017350	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27017351	27017445	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27017446	27017550	1	-	1	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27017446	27017550	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27017551	27017633	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27017634	27017735	1	-	1	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27017634	27017735	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27017736	27017858	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27017859	27017957	1	-	1	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27017859	27017957	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27017958	27018198	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27018199	27018291	1	-	1	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27018199	27018291	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27018292	27018477	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27018478	27018576	1	-	1	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27018478	27018576	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27018577	27018664	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27018665	27018766	1	-	1	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27018665	27018766	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27018767	27018856	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27018857	27019302	1	-	0	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27018857	27019302	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27019303	27019592	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27019593	27019964	1	-	0	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27019593	27019964	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27019965	27020133	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27020134	27020573	0.98	-	2	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27020134	27020573	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27020574	27020721	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27020722	27021331	0.99	-	0	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27020722	27021331	.	-	.	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	start_codon	27021329	27021331	.	-	0	transcript_id "Ledus.S1G322400.t1"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	transcript	27017281	27021331	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	stop_codon	27017278	27017280	.	-	0	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27017281	27017332	0.67	-	1	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27017281	27017332	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27017333	27017445	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27017446	27017550	0.78	-	1	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27017446	27017550	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27017551	27017633	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27017634	27017735	1	-	1	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27017634	27017735	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27017736	27017858	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27017859	27017957	1	-	1	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27017859	27017957	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27017958	27018198	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27018199	27018291	1	-	1	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27018199	27018291	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27018292	27018477	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27018478	27018576	1	-	1	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27018478	27018576	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27018577	27018664	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27018665	27018766	1	-	1	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27018665	27018766	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27018767	27018856	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27018857	27019302	0.99	-	0	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27018857	27019302	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27019303	27019592	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27019593	27019964	1	-	0	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27019593	27019964	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27019965	27020133	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27020134	27020573	1	-	2	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27020134	27020573	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	intron	27020574	27020721	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	CDS	27020722	27021331	1	-	0	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	exon	27020722	27021331	.	-	.	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
Ledus.S1	AUGUSTUS	start_codon	27021329	27021331	.	-	0	transcript_id "Ledus.S1G322400.t2"; gene_id "Ledus.S1G322400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4791.t1 is derived from g2229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19792650	19793696	.	+	.	Ledus.S1G221200
Ledus.S1	AUGUSTUS	transcript	19792650	19793696	.	+	.	transcript_id "Ledus.S1G221200.t1"; gene_id "Ledus.S1G221200"
Ledus.S1	AUGUSTUS	start_codon	19792650	19792652	.	+	0	transcript_id "Ledus.S1G221200.t1"; gene_id "Ledus.S1G221200"
Ledus.S1	AUGUSTUS	CDS	19792650	19793696	0.98	+	0	transcript_id "Ledus.S1G221200.t1"; gene_id "Ledus.S1G221200"
Ledus.S1	AUGUSTUS	exon	19792650	19793696	.	+	.	transcript_id "Ledus.S1G221200.t1"; gene_id "Ledus.S1G221200"
Ledus.S1	AUGUSTUS	stop_codon	19793697	19793699	.	+	0	transcript_id "Ledus.S1G221200.t1"; gene_id "Ledus.S1G221200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7325.t1 is derived from g11996.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1184762	1185289	.	-	.	Ledus.S5G010300
Ledus.S5	AUGUSTUS	transcript	1184762	1185289	.	-	.	transcript_id "Ledus.S5G010300.t1"; gene_id "Ledus.S5G010300"
Ledus.S5	AUGUSTUS	stop_codon	1184759	1184761	.	-	0	transcript_id "Ledus.S5G010300.t1"; gene_id "Ledus.S5G010300"
Ledus.S5	AUGUSTUS	CDS	1184762	1185289	0.65	-	0	transcript_id "Ledus.S5G010300.t1"; gene_id "Ledus.S5G010300"
Ledus.S5	AUGUSTUS	exon	1184762	1185289	.	-	.	transcript_id "Ledus.S5G010300.t1"; gene_id "Ledus.S5G010300"
Ledus.S5	AUGUSTUS	start_codon	1185287	1185289	.	-	0	transcript_id "Ledus.S5G010300.t1"; gene_id "Ledus.S5G010300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1138.t1 is derived from g7999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7875689	7876170	.	+	.	Ledus.S2G102000
Ledus.S2	AUGUSTUS	transcript	7875689	7876170	.	+	.	transcript_id "Ledus.S2G102000.t1"; gene_id "Ledus.S2G102000"
Ledus.S2	AUGUSTUS	start_codon	7875689	7875691	.	+	0	transcript_id "Ledus.S2G102000.t1"; gene_id "Ledus.S2G102000"
Ledus.S2	AUGUSTUS	CDS	7875689	7875805	0.27	+	0	transcript_id "Ledus.S2G102000.t1"; gene_id "Ledus.S2G102000"
Ledus.S2	AUGUSTUS	exon	7875689	7875805	.	+	.	transcript_id "Ledus.S2G102000.t1"; gene_id "Ledus.S2G102000"
Ledus.S2	AUGUSTUS	intron	7875806	7875897	.	+	.	transcript_id "Ledus.S2G102000.t1"; gene_id "Ledus.S2G102000"
Ledus.S2	AUGUSTUS	CDS	7875898	7875961	0.23	+	0	transcript_id "Ledus.S2G102000.t1"; gene_id "Ledus.S2G102000"
Ledus.S2	AUGUSTUS	exon	7875898	7875961	.	+	.	transcript_id "Ledus.S2G102000.t1"; gene_id "Ledus.S2G102000"
Ledus.S2	AUGUSTUS	intron	7875962	7876048	.	+	.	transcript_id "Ledus.S2G102000.t1"; gene_id "Ledus.S2G102000"
Ledus.S2	AUGUSTUS	CDS	7876049	7876170	0.78	+	2	transcript_id "Ledus.S2G102000.t1"; gene_id "Ledus.S2G102000"
Ledus.S2	AUGUSTUS	exon	7876049	7876170	.	+	.	transcript_id "Ledus.S2G102000.t1"; gene_id "Ledus.S2G102000"
Ledus.S2	AUGUSTUS	stop_codon	7876171	7876173	.	+	0	transcript_id "Ledus.S2G102000.t1"; gene_id "Ledus.S2G102000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7569.t1 is derived from g12240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4086351	4087851	.	+	.	Ledus.S5G034700
Ledus.S5	AUGUSTUS	transcript	4086351	4087851	.	+	.	transcript_id "Ledus.S5G034700.t1"; gene_id "Ledus.S5G034700"
Ledus.S5	AUGUSTUS	start_codon	4086351	4086353	.	+	0	transcript_id "Ledus.S5G034700.t1"; gene_id "Ledus.S5G034700"
Ledus.S5	AUGUSTUS	CDS	4086351	4087103	1	+	0	transcript_id "Ledus.S5G034700.t1"; gene_id "Ledus.S5G034700"
Ledus.S5	AUGUSTUS	exon	4086351	4087103	.	+	.	transcript_id "Ledus.S5G034700.t1"; gene_id "Ledus.S5G034700"
Ledus.S5	AUGUSTUS	intron	4087104	4087266	.	+	.	transcript_id "Ledus.S5G034700.t1"; gene_id "Ledus.S5G034700"
Ledus.S5	AUGUSTUS	CDS	4087267	4087851	0.97	+	0	transcript_id "Ledus.S5G034700.t1"; gene_id "Ledus.S5G034700"
Ledus.S5	AUGUSTUS	exon	4087267	4087851	.	+	.	transcript_id "Ledus.S5G034700.t1"; gene_id "Ledus.S5G034700"
Ledus.S5	AUGUSTUS	stop_codon	4087852	4087854	.	+	0	transcript_id "Ledus.S5G034700.t1"; gene_id "Ledus.S5G034700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2563.t1 is derived from g9426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18993890	18999084	.	-	.	Ledus.S2G244500
Ledus.S2	AUGUSTUS	transcript	18993890	18997776	.	-	.	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	stop_codon	18993887	18993889	.	-	0	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	CDS	18993890	18994628	0.52	-	1	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	exon	18993890	18994628	.	-	.	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	intron	18994629	18994795	.	-	.	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	CDS	18994796	18997231	0.64	-	1	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	exon	18994796	18997231	.	-	.	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	intron	18997232	18997330	.	-	.	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	CDS	18997331	18997419	1	-	0	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	exon	18997331	18997419	.	-	.	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	intron	18997420	18997491	.	-	.	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	CDS	18997492	18997577	1	-	2	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	exon	18997492	18997577	.	-	.	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	intron	18997578	18997667	.	-	.	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	CDS	18997668	18997776	0.99	-	0	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	exon	18997668	18997776	.	-	.	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	start_codon	18997774	18997776	.	-	0	transcript_id "Ledus.S2G244500.t1"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	transcript	18993890	18999084	.	-	.	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	stop_codon	18993887	18993889	.	-	0	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	CDS	18993890	18994628	0.49	-	1	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	exon	18993890	18994628	.	-	.	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	intron	18994629	18994795	.	-	.	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	CDS	18994796	18997231	0.65	-	1	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	exon	18994796	18997231	.	-	.	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	intron	18997232	18997330	.	-	.	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	CDS	18997331	18997419	1	-	0	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	exon	18997331	18997419	.	-	.	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	intron	18997420	18997491	.	-	.	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	CDS	18997492	18997588	1	-	1	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	exon	18997492	18997588	.	-	.	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	intron	18997589	18997667	.	-	.	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	CDS	18997668	18997793	1	-	1	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	exon	18997668	18997793	.	-	.	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	intron	18997794	18997933	.	-	.	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	CDS	18997934	18999084	0.69	-	0	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	exon	18997934	18999084	.	-	.	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
Ledus.S2	AUGUSTUS	start_codon	18999082	18999084	.	-	0	transcript_id "Ledus.S2G244500.t2"; gene_id "Ledus.S2G244500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5207.t1 is derived from g2646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22466186	22468190	.	-	.	Ledus.S1G262800
Ledus.S1	AUGUSTUS	transcript	22466186	22468190	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	stop_codon	22466183	22466185	.	-	0	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	CDS	22466186	22466338	0.91	-	0	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	exon	22466186	22466338	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	intron	22466339	22466459	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	CDS	22466460	22466499	1	-	1	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	exon	22466460	22466499	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	intron	22466500	22466589	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	CDS	22466590	22466703	1	-	1	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	exon	22466590	22466703	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	intron	22466704	22466823	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	CDS	22466824	22466908	0.93	-	2	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	exon	22466824	22466908	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	intron	22466909	22467022	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	CDS	22467023	22467143	0.93	-	0	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	exon	22467023	22467143	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	intron	22467144	22467237	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	CDS	22467238	22467363	1	-	0	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	exon	22467238	22467363	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	intron	22467364	22467508	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	CDS	22467509	22467618	1	-	2	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	exon	22467509	22467618	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	intron	22467619	22467737	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	CDS	22467738	22467846	1	-	0	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	exon	22467738	22467846	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	intron	22467847	22468022	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	CDS	22468023	22468190	0.97	-	0	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	exon	22468023	22468190	.	-	.	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
Ledus.S1	AUGUSTUS	start_codon	22468188	22468190	.	-	0	transcript_id "Ledus.S1G262800.t1"; gene_id "Ledus.S1G262800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12722.t1 is derived from g6344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14078153	14078989	.	+	.	Ledus.S4G187800
Ledus.S4	AUGUSTUS	transcript	14078153	14078989	.	+	.	transcript_id "Ledus.S4G187800.t1"; gene_id "Ledus.S4G187800"
Ledus.S4	AUGUSTUS	start_codon	14078153	14078155	.	+	0	transcript_id "Ledus.S4G187800.t1"; gene_id "Ledus.S4G187800"
Ledus.S4	AUGUSTUS	CDS	14078153	14078989	0.99	+	0	transcript_id "Ledus.S4G187800.t1"; gene_id "Ledus.S4G187800"
Ledus.S4	AUGUSTUS	exon	14078153	14078989	.	+	.	transcript_id "Ledus.S4G187800.t1"; gene_id "Ledus.S4G187800"
Ledus.S4	AUGUSTUS	stop_codon	14078990	14078992	.	+	0	transcript_id "Ledus.S4G187800.t1"; gene_id "Ledus.S4G187800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11353.t1 is derived from g4971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3728804	3730946	.	-	.	Ledus.S4G050900
Ledus.S4	AUGUSTUS	transcript	3728804	3730946	.	-	.	transcript_id "Ledus.S4G050900.t1"; gene_id "Ledus.S4G050900"
Ledus.S4	AUGUSTUS	stop_codon	3728801	3728803	.	-	0	transcript_id "Ledus.S4G050900.t1"; gene_id "Ledus.S4G050900"
Ledus.S4	AUGUSTUS	CDS	3728804	3729442	0.97	-	0	transcript_id "Ledus.S4G050900.t1"; gene_id "Ledus.S4G050900"
Ledus.S4	AUGUSTUS	exon	3728804	3729442	.	-	.	transcript_id "Ledus.S4G050900.t1"; gene_id "Ledus.S4G050900"
Ledus.S4	AUGUSTUS	intron	3729443	3729809	.	-	.	transcript_id "Ledus.S4G050900.t1"; gene_id "Ledus.S4G050900"
Ledus.S4	AUGUSTUS	CDS	3729810	3730946	1	-	0	transcript_id "Ledus.S4G050900.t1"; gene_id "Ledus.S4G050900"
Ledus.S4	AUGUSTUS	exon	3729810	3730946	.	-	.	transcript_id "Ledus.S4G050900.t1"; gene_id "Ledus.S4G050900"
Ledus.S4	AUGUSTUS	start_codon	3730944	3730946	.	-	0	transcript_id "Ledus.S4G050900.t1"; gene_id "Ledus.S4G050900"
# This transcript jg9985.t2 is derived from g11015.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9985.t3 is derived from g11015.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9986.t1 is derived from g11016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11749071	11752699	.	+	.	Ledus.S3G146300
Ledus.S3	AUGUSTUS	transcript	11749071	11752699	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	start_codon	11749071	11749073	.	+	0	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	CDS	11749071	11749353	1	+	0	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	exon	11749071	11749353	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	intron	11749354	11749535	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	CDS	11749536	11749695	1	+	2	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	exon	11749536	11749695	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	intron	11749696	11749776	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	CDS	11749777	11749838	1	+	1	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	exon	11749777	11749838	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	intron	11749839	11749916	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	CDS	11749917	11750016	0.7	+	2	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	exon	11749917	11750016	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	intron	11750017	11750122	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	CDS	11750123	11750300	0.7	+	1	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	exon	11750123	11750300	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	intron	11750301	11750461	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	CDS	11750462	11750536	1	+	0	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	exon	11750462	11750536	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	intron	11750537	11750622	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	CDS	11750623	11750720	1	+	0	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	exon	11750623	11750720	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	intron	11750721	11750806	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	CDS	11750807	11751297	0.97	+	1	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	exon	11750807	11751297	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	intron	11751298	11751380	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	CDS	11751381	11752699	1	+	2	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	exon	11751381	11752699	.	+	.	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
Ledus.S3	AUGUSTUS	stop_codon	11752700	11752702	.	+	0	transcript_id "Ledus.S3G146300.t1"; gene_id "Ledus.S3G146300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2968.t1 is derived from g403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5000762	5002913	.	+	.	Ledus.S1G038900
Ledus.S1	AUGUSTUS	transcript	5000762	5002913	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	start_codon	5000762	5000764	.	+	0	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	CDS	5000762	5000810	0.34	+	0	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	exon	5000762	5000810	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	intron	5000811	5001235	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	CDS	5001236	5001306	1	+	2	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	exon	5001236	5001306	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	intron	5001307	5001481	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	CDS	5001482	5001563	1	+	0	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	exon	5001482	5001563	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	intron	5001564	5001686	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	CDS	5001687	5001802	1	+	2	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	exon	5001687	5001802	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	intron	5001803	5001884	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	CDS	5001885	5002055	1	+	0	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	exon	5001885	5002055	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	intron	5002056	5002173	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	CDS	5002174	5002215	1	+	0	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	exon	5002174	5002215	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	intron	5002216	5002345	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	CDS	5002346	5002423	1	+	0	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	exon	5002346	5002423	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	intron	5002424	5002531	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	CDS	5002532	5002695	1	+	0	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	exon	5002532	5002695	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	intron	5002696	5002909	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	CDS	5002910	5002913	1	+	1	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	exon	5002910	5002913	.	+	.	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
Ledus.S1	AUGUSTUS	stop_codon	5002914	5002916	.	+	0	transcript_id "Ledus.S1G038900.t1"; gene_id "Ledus.S1G038900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11017.t1 is derived from g4635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1160165	1160872	.	-	.	Ledus.S4G017300
Ledus.S4	AUGUSTUS	transcript	1160165	1160872	.	-	.	transcript_id "Ledus.S4G017300.t1"; gene_id "Ledus.S4G017300"
Ledus.S4	AUGUSTUS	stop_codon	1160162	1160164	.	-	0	transcript_id "Ledus.S4G017300.t1"; gene_id "Ledus.S4G017300"
Ledus.S4	AUGUSTUS	CDS	1160165	1160872	0.53	-	0	transcript_id "Ledus.S4G017300.t1"; gene_id "Ledus.S4G017300"
Ledus.S4	AUGUSTUS	exon	1160165	1160872	.	-	.	transcript_id "Ledus.S4G017300.t1"; gene_id "Ledus.S4G017300"
Ledus.S4	AUGUSTUS	start_codon	1160870	1160872	.	-	0	transcript_id "Ledus.S4G017300.t1"; gene_id "Ledus.S4G017300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8095.t1 is derived from g12766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9120816	9121879	.	-	.	Ledus.S5G087300
Ledus.S5	AUGUSTUS	transcript	9120816	9121879	.	-	.	transcript_id "Ledus.S5G087300.t1"; gene_id "Ledus.S5G087300"
Ledus.S5	AUGUSTUS	stop_codon	9120813	9120815	.	-	0	transcript_id "Ledus.S5G087300.t1"; gene_id "Ledus.S5G087300"
Ledus.S5	AUGUSTUS	CDS	9120816	9121713	1	-	1	transcript_id "Ledus.S5G087300.t1"; gene_id "Ledus.S5G087300"
Ledus.S5	AUGUSTUS	exon	9120816	9121713	.	-	.	transcript_id "Ledus.S5G087300.t1"; gene_id "Ledus.S5G087300"
Ledus.S5	AUGUSTUS	intron	9121714	9121805	.	-	.	transcript_id "Ledus.S5G087300.t1"; gene_id "Ledus.S5G087300"
Ledus.S5	AUGUSTUS	CDS	9121806	9121879	1	-	0	transcript_id "Ledus.S5G087300.t1"; gene_id "Ledus.S5G087300"
Ledus.S5	AUGUSTUS	exon	9121806	9121879	.	-	.	transcript_id "Ledus.S5G087300.t1"; gene_id "Ledus.S5G087300"
Ledus.S5	AUGUSTUS	start_codon	9121877	9121879	.	-	0	transcript_id "Ledus.S5G087300.t1"; gene_id "Ledus.S5G087300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1160.t1 is derived from g8021.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7990217	7990957	.	+	.	Ledus.S2G104200
Ledus.S2	AUGUSTUS	transcript	7990217	7990957	.	+	.	transcript_id "Ledus.S2G104200.t1"; gene_id "Ledus.S2G104200"
Ledus.S2	AUGUSTUS	start_codon	7990217	7990219	.	+	0	transcript_id "Ledus.S2G104200.t1"; gene_id "Ledus.S2G104200"
Ledus.S2	AUGUSTUS	CDS	7990217	7990957	0.23	+	0	transcript_id "Ledus.S2G104200.t1"; gene_id "Ledus.S2G104200"
Ledus.S2	AUGUSTUS	exon	7990217	7990957	.	+	.	transcript_id "Ledus.S2G104200.t1"; gene_id "Ledus.S2G104200"
Ledus.S2	AUGUSTUS	stop_codon	7990958	7990960	.	+	0	transcript_id "Ledus.S2G104200.t1"; gene_id "Ledus.S2G104200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6700.t1 is derived from g4143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33393723	33393932	.	-	.	Ledus.S1G412100
Ledus.S1	AUGUSTUS	transcript	33393723	33393932	.	-	.	transcript_id "Ledus.S1G412100.t1"; gene_id "Ledus.S1G412100"
Ledus.S1	AUGUSTUS	stop_codon	33393720	33393722	.	-	0	transcript_id "Ledus.S1G412100.t1"; gene_id "Ledus.S1G412100"
Ledus.S1	AUGUSTUS	CDS	33393723	33393932	0.59	-	0	transcript_id "Ledus.S1G412100.t1"; gene_id "Ledus.S1G412100"
Ledus.S1	AUGUSTUS	exon	33393723	33393932	.	-	.	transcript_id "Ledus.S1G412100.t1"; gene_id "Ledus.S1G412100"
Ledus.S1	AUGUSTUS	start_codon	33393930	33393932	.	-	0	transcript_id "Ledus.S1G412100.t1"; gene_id "Ledus.S1G412100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5716.t1 is derived from g3155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26177218	26177600	.	+	.	Ledus.S1G313700
Ledus.S1	AUGUSTUS	transcript	26177218	26177600	.	+	.	transcript_id "Ledus.S1G313700.t1"; gene_id "Ledus.S1G313700"
Ledus.S1	AUGUSTUS	start_codon	26177218	26177220	.	+	0	transcript_id "Ledus.S1G313700.t1"; gene_id "Ledus.S1G313700"
Ledus.S1	AUGUSTUS	CDS	26177218	26177395	0.55	+	0	transcript_id "Ledus.S1G313700.t1"; gene_id "Ledus.S1G313700"
Ledus.S1	AUGUSTUS	exon	26177218	26177395	.	+	.	transcript_id "Ledus.S1G313700.t1"; gene_id "Ledus.S1G313700"
Ledus.S1	AUGUSTUS	intron	26177396	26177502	.	+	.	transcript_id "Ledus.S1G313700.t1"; gene_id "Ledus.S1G313700"
Ledus.S1	AUGUSTUS	CDS	26177503	26177600	0.8	+	2	transcript_id "Ledus.S1G313700.t1"; gene_id "Ledus.S1G313700"
Ledus.S1	AUGUSTUS	exon	26177503	26177600	.	+	.	transcript_id "Ledus.S1G313700.t1"; gene_id "Ledus.S1G313700"
Ledus.S1	AUGUSTUS	stop_codon	26177601	26177603	.	+	0	transcript_id "Ledus.S1G313700.t1"; gene_id "Ledus.S1G313700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11666.t1 is derived from g5285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5817743	5819736	.	-	.	Ledus.S4G082200
Ledus.S4	AUGUSTUS	transcript	5817743	5819736	.	-	.	transcript_id "Ledus.S4G082200.t1"; gene_id "Ledus.S4G082200"
Ledus.S4	AUGUSTUS	stop_codon	5817740	5817742	.	-	0	transcript_id "Ledus.S4G082200.t1"; gene_id "Ledus.S4G082200"
Ledus.S4	AUGUSTUS	CDS	5817743	5819410	0.92	-	0	transcript_id "Ledus.S4G082200.t1"; gene_id "Ledus.S4G082200"
Ledus.S4	AUGUSTUS	exon	5817743	5819410	.	-	.	transcript_id "Ledus.S4G082200.t1"; gene_id "Ledus.S4G082200"
Ledus.S4	AUGUSTUS	intron	5819411	5819505	.	-	.	transcript_id "Ledus.S4G082200.t1"; gene_id "Ledus.S4G082200"
Ledus.S4	AUGUSTUS	CDS	5819506	5819736	0.63	-	0	transcript_id "Ledus.S4G082200.t1"; gene_id "Ledus.S4G082200"
Ledus.S4	AUGUSTUS	exon	5819506	5819736	.	-	.	transcript_id "Ledus.S4G082200.t1"; gene_id "Ledus.S4G082200"
Ledus.S4	AUGUSTUS	start_codon	5819734	5819736	.	-	0	transcript_id "Ledus.S4G082200.t1"; gene_id "Ledus.S4G082200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8377.t1 is derived from g13049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11355431	11356972	.	-	.	Ledus.S5G115500
Ledus.S5	AUGUSTUS	transcript	11355431	11356972	.	-	.	transcript_id "Ledus.S5G115500.t1"; gene_id "Ledus.S5G115500"
Ledus.S5	AUGUSTUS	stop_codon	11355428	11355430	.	-	0	transcript_id "Ledus.S5G115500.t1"; gene_id "Ledus.S5G115500"
Ledus.S5	AUGUSTUS	CDS	11355431	11356972	0.95	-	0	transcript_id "Ledus.S5G115500.t1"; gene_id "Ledus.S5G115500"
Ledus.S5	AUGUSTUS	exon	11355431	11356972	.	-	.	transcript_id "Ledus.S5G115500.t1"; gene_id "Ledus.S5G115500"
Ledus.S5	AUGUSTUS	start_codon	11356970	11356972	.	-	0	transcript_id "Ledus.S5G115500.t1"; gene_id "Ledus.S5G115500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3808.t1 is derived from g1244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12469869	12476440	.	-	.	Ledus.S1G122900
Ledus.S1	AUGUSTUS	transcript	12469869	12476440	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	stop_codon	12469866	12469868	.	-	0	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12469869	12470032	1	-	2	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12469869	12470032	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12470033	12470126	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12470127	12470256	1	-	0	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12470127	12470256	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12470257	12470467	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12470468	12470640	0.92	-	2	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12470468	12470640	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12470641	12470748	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12470749	12470897	1	-	1	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12470749	12470897	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12470898	12470993	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12470994	12471133	1	-	0	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12470994	12471133	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12471134	12471292	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12471293	12471472	0.99	-	0	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12471293	12471472	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12471473	12471583	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12471584	12471687	0.99	-	2	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12471584	12471687	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12471688	12471864	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12471865	12471996	1	-	2	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12471865	12471996	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12471997	12472156	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12472157	12472355	1	-	0	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12472157	12472355	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12472356	12472443	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12472444	12472562	0.97	-	2	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12472444	12472562	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12472563	12472671	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12472672	12472713	0.99	-	2	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12472672	12472713	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12472714	12472942	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12472943	12473102	0.99	-	0	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12472943	12473102	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12473103	12473210	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12473211	12473391	1	-	1	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12473211	12473391	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12473392	12473541	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12473542	12473665	1	-	2	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12473542	12473665	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12473666	12473826	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12473827	12473972	1	-	1	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12473827	12473972	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12473973	12474265	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12474266	12474439	1	-	1	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12474266	12474439	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12474440	12474559	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12474560	12474744	0.99	-	0	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12474560	12474744	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12474745	12474856	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12474857	12475019	0.99	-	1	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12474857	12475019	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12475020	12475337	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12475338	12475496	1	-	1	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12475338	12475496	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12475497	12475726	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12475727	12475814	1	-	2	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12475727	12475814	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12475815	12475896	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12475897	12476032	1	-	0	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12475897	12476032	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	intron	12476033	12476350	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	CDS	12476351	12476440	1	-	0	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	exon	12476351	12476440	.	-	.	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
Ledus.S1	AUGUSTUS	start_codon	12476438	12476440	.	-	0	transcript_id "Ledus.S1G122900.t1"; gene_id "Ledus.S1G122900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2237.t1 is derived from g9100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16277582	16277893	.	-	.	Ledus.S2G211900
Ledus.S2	AUGUSTUS	transcript	16277582	16277893	.	-	.	transcript_id "Ledus.S2G211900.t1"; gene_id "Ledus.S2G211900"
Ledus.S2	AUGUSTUS	stop_codon	16277579	16277581	.	-	0	transcript_id "Ledus.S2G211900.t1"; gene_id "Ledus.S2G211900"
Ledus.S2	AUGUSTUS	CDS	16277582	16277893	0.76	-	0	transcript_id "Ledus.S2G211900.t1"; gene_id "Ledus.S2G211900"
Ledus.S2	AUGUSTUS	exon	16277582	16277893	.	-	.	transcript_id "Ledus.S2G211900.t1"; gene_id "Ledus.S2G211900"
Ledus.S2	AUGUSTUS	start_codon	16277891	16277893	.	-	0	transcript_id "Ledus.S2G211900.t1"; gene_id "Ledus.S2G211900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7730.t1 is derived from g12401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5603472	5604146	.	-	.	Ledus.S5G050800
Ledus.S5	AUGUSTUS	transcript	5603472	5604146	.	-	.	transcript_id "Ledus.S5G050800.t1"; gene_id "Ledus.S5G050800"
Ledus.S5	AUGUSTUS	stop_codon	5603469	5603471	.	-	0	transcript_id "Ledus.S5G050800.t1"; gene_id "Ledus.S5G050800"
Ledus.S5	AUGUSTUS	CDS	5603472	5604146	0.71	-	0	transcript_id "Ledus.S5G050800.t1"; gene_id "Ledus.S5G050800"
Ledus.S5	AUGUSTUS	exon	5603472	5604146	.	-	.	transcript_id "Ledus.S5G050800.t1"; gene_id "Ledus.S5G050800"
Ledus.S5	AUGUSTUS	start_codon	5604144	5604146	.	-	0	transcript_id "Ledus.S5G050800.t1"; gene_id "Ledus.S5G050800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7476.t1 is derived from g12147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3047434	3048757	.	+	.	Ledus.S5G025400
Ledus.S5	AUGUSTUS	transcript	3047434	3048757	.	+	.	transcript_id "Ledus.S5G025400.t1"; gene_id "Ledus.S5G025400"
Ledus.S5	AUGUSTUS	start_codon	3047434	3047436	.	+	0	transcript_id "Ledus.S5G025400.t1"; gene_id "Ledus.S5G025400"
Ledus.S5	AUGUSTUS	CDS	3047434	3047982	0.88	+	0	transcript_id "Ledus.S5G025400.t1"; gene_id "Ledus.S5G025400"
Ledus.S5	AUGUSTUS	exon	3047434	3047982	.	+	.	transcript_id "Ledus.S5G025400.t1"; gene_id "Ledus.S5G025400"
Ledus.S5	AUGUSTUS	intron	3047983	3048062	.	+	.	transcript_id "Ledus.S5G025400.t1"; gene_id "Ledus.S5G025400"
Ledus.S5	AUGUSTUS	CDS	3048063	3048321	0.97	+	0	transcript_id "Ledus.S5G025400.t1"; gene_id "Ledus.S5G025400"
Ledus.S5	AUGUSTUS	exon	3048063	3048321	.	+	.	transcript_id "Ledus.S5G025400.t1"; gene_id "Ledus.S5G025400"
Ledus.S5	AUGUSTUS	intron	3048322	3048404	.	+	.	transcript_id "Ledus.S5G025400.t1"; gene_id "Ledus.S5G025400"
Ledus.S5	AUGUSTUS	CDS	3048405	3048757	1	+	2	transcript_id "Ledus.S5G025400.t1"; gene_id "Ledus.S5G025400"
Ledus.S5	AUGUSTUS	exon	3048405	3048757	.	+	.	transcript_id "Ledus.S5G025400.t1"; gene_id "Ledus.S5G025400"
Ledus.S5	AUGUSTUS	stop_codon	3048758	3048760	.	+	0	transcript_id "Ledus.S5G025400.t1"; gene_id "Ledus.S5G025400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8474.t1 is derived from g13146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12094808	12096506	.	+	.	Ledus.S5G125200
Ledus.S5	AUGUSTUS	transcript	12094808	12096506	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	start_codon	12094808	12094810	.	+	0	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	CDS	12094808	12094881	0.91	+	0	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	exon	12094808	12094881	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	intron	12094882	12094954	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	CDS	12094955	12095076	1	+	1	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	exon	12094955	12095076	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	intron	12095077	12095149	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	CDS	12095150	12095184	1	+	2	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	exon	12095150	12095184	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	intron	12095185	12095270	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	CDS	12095271	12095374	1	+	0	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	exon	12095271	12095374	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	intron	12095375	12095470	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	CDS	12095471	12095674	1	+	1	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	exon	12095471	12095674	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	intron	12095675	12095773	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	CDS	12095774	12095790	0.95	+	1	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	exon	12095774	12095790	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	intron	12095791	12096014	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	CDS	12096015	12096058	0.64	+	2	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	exon	12096015	12096058	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	intron	12096059	12096135	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	CDS	12096136	12096292	0.91	+	0	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	exon	12096136	12096292	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	intron	12096293	12096405	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	CDS	12096406	12096506	1	+	2	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	exon	12096406	12096506	.	+	.	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
Ledus.S5	AUGUSTUS	stop_codon	12096507	12096509	.	+	0	transcript_id "Ledus.S5G125200.t1"; gene_id "Ledus.S5G125200"
# This transcript jg5666.t2 is derived from g3105.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5666.t3 is derived from g3105.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5667.t1 is derived from g3106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25704662	25705194	.	+	.	Ledus.S1G308800
Ledus.S1	AUGUSTUS	transcript	25704662	25705194	.	+	.	transcript_id "Ledus.S1G308800.t1"; gene_id "Ledus.S1G308800"
Ledus.S1	AUGUSTUS	start_codon	25704662	25704664	.	+	0	transcript_id "Ledus.S1G308800.t1"; gene_id "Ledus.S1G308800"
Ledus.S1	AUGUSTUS	CDS	25704662	25704764	0.21	+	0	transcript_id "Ledus.S1G308800.t1"; gene_id "Ledus.S1G308800"
Ledus.S1	AUGUSTUS	exon	25704662	25704764	.	+	.	transcript_id "Ledus.S1G308800.t1"; gene_id "Ledus.S1G308800"
Ledus.S1	AUGUSTUS	intron	25704765	25704865	.	+	.	transcript_id "Ledus.S1G308800.t1"; gene_id "Ledus.S1G308800"
Ledus.S1	AUGUSTUS	CDS	25704866	25704920	0.47	+	2	transcript_id "Ledus.S1G308800.t1"; gene_id "Ledus.S1G308800"
Ledus.S1	AUGUSTUS	exon	25704866	25704920	.	+	.	transcript_id "Ledus.S1G308800.t1"; gene_id "Ledus.S1G308800"
Ledus.S1	AUGUSTUS	intron	25704921	25704995	.	+	.	transcript_id "Ledus.S1G308800.t1"; gene_id "Ledus.S1G308800"
Ledus.S1	AUGUSTUS	CDS	25704996	25705194	0.92	+	1	transcript_id "Ledus.S1G308800.t1"; gene_id "Ledus.S1G308800"
Ledus.S1	AUGUSTUS	exon	25704996	25705194	.	+	.	transcript_id "Ledus.S1G308800.t1"; gene_id "Ledus.S1G308800"
Ledus.S1	AUGUSTUS	stop_codon	25705195	25705197	.	+	0	transcript_id "Ledus.S1G308800.t1"; gene_id "Ledus.S1G308800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7849.t1 is derived from g12520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7443647	7450905	.	-	.	Ledus.S5G062700
Ledus.S5	AUGUSTUS	transcript	7443647	7450905	.	-	.	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	stop_codon	7443644	7443646	.	-	0	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	CDS	7443647	7443819	0.99	-	2	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	exon	7443647	7443819	.	-	.	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	intron	7443820	7446085	.	-	.	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	CDS	7446086	7446155	0.45	-	0	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	exon	7446086	7446155	.	-	.	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	intron	7446156	7447762	.	-	.	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	CDS	7447763	7447909	0.89	-	0	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	exon	7447763	7447909	.	-	.	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	intron	7447910	7450734	.	-	.	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	CDS	7450735	7450905	0.49	-	0	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	exon	7450735	7450905	.	-	.	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
Ledus.S5	AUGUSTUS	start_codon	7450903	7450905	.	-	0	transcript_id "Ledus.S5G062700.t1"; gene_id "Ledus.S5G062700"
# This transcript jg11614.t2 is derived from g5232.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11615.t1 is derived from g5233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5535995	5539018	.	-	.	Ledus.S4G077100
Ledus.S4	AUGUSTUS	transcript	5535995	5539018	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	stop_codon	5535992	5535994	.	-	0	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	CDS	5535995	5536145	1	-	1	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	exon	5535995	5536145	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	intron	5536146	5536243	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	CDS	5536244	5536363	1	-	1	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	exon	5536244	5536363	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	intron	5536364	5536442	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	CDS	5536443	5536540	1	-	0	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	exon	5536443	5536540	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	intron	5536541	5536623	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	CDS	5536624	5536736	1	-	2	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	exon	5536624	5536736	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	intron	5536737	5536831	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	CDS	5536832	5536986	1	-	1	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	exon	5536832	5536986	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	intron	5536987	5537114	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	CDS	5537115	5537284	0.63	-	0	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	exon	5537115	5537284	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	intron	5537285	5537606	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	CDS	5537607	5537695	0.84	-	2	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	exon	5537607	5537695	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	intron	5537696	5537789	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	CDS	5537790	5537825	0.82	-	2	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	exon	5537790	5537825	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	intron	5537826	5538059	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	CDS	5538060	5538691	0.96	-	1	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	exon	5538060	5538691	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	intron	5538692	5538779	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	CDS	5538780	5539018	1	-	0	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	exon	5538780	5539018	.	-	.	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
Ledus.S4	AUGUSTUS	start_codon	5539016	5539018	.	-	0	transcript_id "Ledus.S4G077100.t1"; gene_id "Ledus.S4G077100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11814.t1 is derived from g5433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6958379	6959110	.	-	.	Ledus.S4G097000
Ledus.S4	AUGUSTUS	transcript	6958379	6959110	.	-	.	transcript_id "Ledus.S4G097000.t1"; gene_id "Ledus.S4G097000"
Ledus.S4	AUGUSTUS	stop_codon	6958376	6958378	.	-	0	transcript_id "Ledus.S4G097000.t1"; gene_id "Ledus.S4G097000"
Ledus.S4	AUGUSTUS	CDS	6958379	6958810	0.42	-	0	transcript_id "Ledus.S4G097000.t1"; gene_id "Ledus.S4G097000"
Ledus.S4	AUGUSTUS	exon	6958379	6958810	.	-	.	transcript_id "Ledus.S4G097000.t1"; gene_id "Ledus.S4G097000"
Ledus.S4	AUGUSTUS	intron	6958811	6958897	.	-	.	transcript_id "Ledus.S4G097000.t1"; gene_id "Ledus.S4G097000"
Ledus.S4	AUGUSTUS	CDS	6958898	6959110	0.39	-	0	transcript_id "Ledus.S4G097000.t1"; gene_id "Ledus.S4G097000"
Ledus.S4	AUGUSTUS	exon	6958898	6959110	.	-	.	transcript_id "Ledus.S4G097000.t1"; gene_id "Ledus.S4G097000"
Ledus.S4	AUGUSTUS	start_codon	6959108	6959110	.	-	0	transcript_id "Ledus.S4G097000.t1"; gene_id "Ledus.S4G097000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1572.t1 is derived from g8433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10996316	11001315	.	-	.	Ledus.S2G145400
Ledus.S2	AUGUSTUS	transcript	10996316	11001315	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	stop_codon	10996313	10996315	.	-	0	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	CDS	10996316	10996706	0.95	-	1	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	exon	10996316	10996706	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	intron	10996707	10996800	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	CDS	10996801	10997073	1	-	1	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	exon	10996801	10997073	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	intron	10997074	10997167	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	CDS	10997168	10998483	0.69	-	0	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	exon	10997168	10998483	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	intron	10998484	10998591	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	CDS	10998592	10998792	0.96	-	0	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	exon	10998592	10998792	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	intron	10998793	10998878	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	CDS	10998879	10999199	0.67	-	0	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	exon	10998879	10999199	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	intron	10999200	10999330	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	CDS	10999331	10999504	1	-	0	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	exon	10999331	10999504	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	intron	10999505	10999609	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	CDS	10999610	11000179	1	-	0	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	exon	10999610	11000179	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	intron	11000180	11000312	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	CDS	11000313	11000562	1	-	1	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	exon	11000313	11000562	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	intron	11000563	11000919	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	CDS	11000920	11000996	1	-	0	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	exon	11000920	11000996	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	intron	11000997	11001090	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	CDS	11001091	11001315	1	-	0	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	exon	11001091	11001315	.	-	.	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
Ledus.S2	AUGUSTUS	start_codon	11001313	11001315	.	-	0	transcript_id "Ledus.S2G145400.t1"; gene_id "Ledus.S2G145400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10717.t1 is derived from g11747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17345003	17346722	.	-	.	Ledus.S3G219400
Ledus.S3	AUGUSTUS	transcript	17345003	17346722	.	-	.	transcript_id "Ledus.S3G219400.t1"; gene_id "Ledus.S3G219400"
Ledus.S3	AUGUSTUS	stop_codon	17345000	17345002	.	-	0	transcript_id "Ledus.S3G219400.t1"; gene_id "Ledus.S3G219400"
Ledus.S3	AUGUSTUS	CDS	17345003	17345393	0.89	-	1	transcript_id "Ledus.S3G219400.t1"; gene_id "Ledus.S3G219400"
Ledus.S3	AUGUSTUS	exon	17345003	17345393	.	-	.	transcript_id "Ledus.S3G219400.t1"; gene_id "Ledus.S3G219400"
Ledus.S3	AUGUSTUS	intron	17345394	17345478	.	-	.	transcript_id "Ledus.S3G219400.t1"; gene_id "Ledus.S3G219400"
Ledus.S3	AUGUSTUS	CDS	17345479	17346722	0.79	-	0	transcript_id "Ledus.S3G219400.t1"; gene_id "Ledus.S3G219400"
Ledus.S3	AUGUSTUS	exon	17345479	17346722	.	-	.	transcript_id "Ledus.S3G219400.t1"; gene_id "Ledus.S3G219400"
Ledus.S3	AUGUSTUS	start_codon	17346720	17346722	.	-	0	transcript_id "Ledus.S3G219400.t1"; gene_id "Ledus.S3G219400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12125.t1 is derived from g5744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9650403	9653613	.	-	.	Ledus.S4G128100
Ledus.S4	AUGUSTUS	transcript	9650403	9653613	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	stop_codon	9650400	9650402	.	-	0	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	CDS	9650403	9650504	0.97	-	0	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	exon	9650403	9650504	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	intron	9650505	9650591	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	CDS	9650592	9650692	1	-	2	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	exon	9650592	9650692	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	intron	9650693	9650777	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	CDS	9650778	9650948	1	-	2	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	exon	9650778	9650948	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	intron	9650949	9651040	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	CDS	9651041	9651215	1	-	0	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	exon	9651041	9651215	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	intron	9651216	9651315	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	CDS	9651316	9651407	1	-	2	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	exon	9651316	9651407	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	intron	9651408	9651531	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	CDS	9651532	9651634	1	-	0	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	exon	9651532	9651634	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	intron	9651635	9651724	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	CDS	9651725	9652327	0.99	-	0	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	exon	9651725	9652327	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	intron	9652328	9652398	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	CDS	9652399	9652476	1	-	0	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	exon	9652399	9652476	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	intron	9652477	9652584	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	CDS	9652585	9653024	0.94	-	2	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	exon	9652585	9653024	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	intron	9653025	9653264	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	CDS	9653265	9653351	0.52	-	2	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	exon	9653265	9653351	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	intron	9653352	9653597	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	CDS	9653598	9653613	0.98	-	0	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	exon	9653598	9653613	.	-	.	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
Ledus.S4	AUGUSTUS	start_codon	9653611	9653613	.	-	0	transcript_id "Ledus.S4G128100.t1"; gene_id "Ledus.S4G128100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5532.t1 is derived from g2971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24966797	24971528	.	-	.	Ledus.S1G295300
Ledus.S1	AUGUSTUS	transcript	24966797	24971528	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	stop_codon	24966794	24966796	.	-	0	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24966797	24966950	0.86	-	1	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24966797	24966950	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	intron	24966951	24967134	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24967135	24967241	0.38	-	0	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24967135	24967241	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	intron	24967242	24967411	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24967412	24968331	0.5	-	2	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24967412	24968331	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	intron	24968332	24968438	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24968439	24968958	0.95	-	0	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24968439	24968958	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	intron	24968959	24969089	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24969090	24969159	1	-	1	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24969090	24969159	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	intron	24969160	24969295	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24969296	24969353	1	-	2	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24969296	24969353	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	intron	24969354	24969482	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24969483	24969525	1	-	0	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24969483	24969525	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	intron	24969526	24969614	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24969615	24969691	1	-	2	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24969615	24969691	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	intron	24969692	24969841	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24969842	24970133	0.91	-	0	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24969842	24970133	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	intron	24970134	24970241	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24970242	24970475	0.48	-	0	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24970242	24970475	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	intron	24970476	24970583	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24970584	24970601	0.62	-	0	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24970584	24970601	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	intron	24970602	24971017	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24971018	24971103	0.29	-	2	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24971018	24971103	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	intron	24971104	24971332	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	CDS	24971333	24971528	0.26	-	0	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	exon	24971333	24971528	.	-	.	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
Ledus.S1	AUGUSTUS	start_codon	24971526	24971528	.	-	0	transcript_id "Ledus.S1G295300.t1"; gene_id "Ledus.S1G295300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4338.t1 is derived from g1774.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16462313	16464031	.	+	.	Ledus.S1G175900
Ledus.S1	AUGUSTUS	transcript	16462313	16464031	.	+	.	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	start_codon	16462313	16462315	.	+	0	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	CDS	16462313	16462972	0.86	+	0	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	exon	16462313	16462972	.	+	.	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	intron	16462973	16463064	.	+	.	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	CDS	16463065	16463147	1	+	0	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	exon	16463065	16463147	.	+	.	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	intron	16463148	16463240	.	+	.	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	CDS	16463241	16463633	0.97	+	1	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	exon	16463241	16463633	.	+	.	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	intron	16463634	16463718	.	+	.	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	CDS	16463719	16464031	0.77	+	1	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	exon	16463719	16464031	.	+	.	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
Ledus.S1	AUGUSTUS	stop_codon	16464032	16464034	.	+	0	transcript_id "Ledus.S1G175900.t1"; gene_id "Ledus.S1G175900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3236.t1 is derived from g671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7056681	7058961	.	-	.	Ledus.S1G065700
Ledus.S1	AUGUSTUS	transcript	7056681	7058961	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	stop_codon	7056678	7056680	.	-	0	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	CDS	7056681	7056828	0.97	-	1	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	exon	7056681	7056828	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	intron	7056829	7056968	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	CDS	7056969	7057033	1	-	0	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	exon	7056969	7057033	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	intron	7057034	7057179	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	CDS	7057180	7057266	1	-	0	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	exon	7057180	7057266	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	intron	7057267	7057398	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	CDS	7057399	7057467	1	-	0	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	exon	7057399	7057467	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	intron	7057468	7057615	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	CDS	7057616	7057667	0.57	-	1	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	exon	7057616	7057667	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	intron	7057668	7057771	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	CDS	7057772	7057854	0.53	-	0	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	exon	7057772	7057854	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	intron	7057855	7057940	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	CDS	7057941	7058017	1	-	2	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	exon	7057941	7058017	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	intron	7058018	7058110	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	CDS	7058111	7058305	1	-	2	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	exon	7058111	7058305	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	intron	7058306	7058401	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	CDS	7058402	7058459	1	-	0	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	exon	7058402	7058459	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	intron	7058460	7058602	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	CDS	7058603	7058697	1	-	2	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	exon	7058603	7058697	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	intron	7058698	7058843	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	CDS	7058844	7058961	0.95	-	0	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	exon	7058844	7058961	.	-	.	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
Ledus.S1	AUGUSTUS	start_codon	7058959	7058961	.	-	0	transcript_id "Ledus.S1G065700.t1"; gene_id "Ledus.S1G065700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6121.t1 is derived from g3564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29016541	29016935	.	+	.	Ledus.S1G354200
Ledus.S1	AUGUSTUS	transcript	29016541	29016935	.	+	.	transcript_id "Ledus.S1G354200.t1"; gene_id "Ledus.S1G354200"
Ledus.S1	AUGUSTUS	start_codon	29016541	29016543	.	+	0	transcript_id "Ledus.S1G354200.t1"; gene_id "Ledus.S1G354200"
Ledus.S1	AUGUSTUS	CDS	29016541	29016712	0.99	+	0	transcript_id "Ledus.S1G354200.t1"; gene_id "Ledus.S1G354200"
Ledus.S1	AUGUSTUS	exon	29016541	29016712	.	+	.	transcript_id "Ledus.S1G354200.t1"; gene_id "Ledus.S1G354200"
Ledus.S1	AUGUSTUS	intron	29016713	29016831	.	+	.	transcript_id "Ledus.S1G354200.t1"; gene_id "Ledus.S1G354200"
Ledus.S1	AUGUSTUS	CDS	29016832	29016935	0.99	+	2	transcript_id "Ledus.S1G354200.t1"; gene_id "Ledus.S1G354200"
Ledus.S1	AUGUSTUS	exon	29016832	29016935	.	+	.	transcript_id "Ledus.S1G354200.t1"; gene_id "Ledus.S1G354200"
Ledus.S1	AUGUSTUS	stop_codon	29016936	29016938	.	+	0	transcript_id "Ledus.S1G354200.t1"; gene_id "Ledus.S1G354200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8963.t1 is derived from g9993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3549095	3551571	.	+	.	Ledus.S3G044000
Ledus.S3	AUGUSTUS	transcript	3549095	3551571	.	+	.	transcript_id "Ledus.S3G044000.t1"; gene_id "Ledus.S3G044000"
Ledus.S3	AUGUSTUS	start_codon	3549095	3549097	.	+	0	transcript_id "Ledus.S3G044000.t1"; gene_id "Ledus.S3G044000"
Ledus.S3	AUGUSTUS	CDS	3549095	3549743	0.95	+	0	transcript_id "Ledus.S3G044000.t1"; gene_id "Ledus.S3G044000"
Ledus.S3	AUGUSTUS	exon	3549095	3549743	.	+	.	transcript_id "Ledus.S3G044000.t1"; gene_id "Ledus.S3G044000"
Ledus.S3	AUGUSTUS	intron	3549744	3549833	.	+	.	transcript_id "Ledus.S3G044000.t1"; gene_id "Ledus.S3G044000"
Ledus.S3	AUGUSTUS	CDS	3549834	3551245	0.45	+	2	transcript_id "Ledus.S3G044000.t1"; gene_id "Ledus.S3G044000"
Ledus.S3	AUGUSTUS	exon	3549834	3551245	.	+	.	transcript_id "Ledus.S3G044000.t1"; gene_id "Ledus.S3G044000"
Ledus.S3	AUGUSTUS	intron	3551246	3551415	.	+	.	transcript_id "Ledus.S3G044000.t1"; gene_id "Ledus.S3G044000"
Ledus.S3	AUGUSTUS	CDS	3551416	3551571	0.94	+	0	transcript_id "Ledus.S3G044000.t1"; gene_id "Ledus.S3G044000"
Ledus.S3	AUGUSTUS	exon	3551416	3551571	.	+	.	transcript_id "Ledus.S3G044000.t1"; gene_id "Ledus.S3G044000"
Ledus.S3	AUGUSTUS	stop_codon	3551572	3551574	.	+	0	transcript_id "Ledus.S3G044000.t1"; gene_id "Ledus.S3G044000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11030.t1 is derived from g4648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1298746	1300159	.	+	.	Ledus.S4G018600
Ledus.S4	AUGUSTUS	transcript	1298746	1300159	.	+	.	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	start_codon	1298746	1298748	.	+	0	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	CDS	1298746	1298857	0.32	+	0	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	exon	1298746	1298857	.	+	.	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	intron	1298858	1299008	.	+	.	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	CDS	1299009	1299504	0.52	+	2	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	exon	1299009	1299504	.	+	.	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	intron	1299505	1299773	.	+	.	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	CDS	1299774	1299824	0.56	+	1	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	exon	1299774	1299824	.	+	.	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	intron	1299825	1300137	.	+	.	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	CDS	1300138	1300159	0.56	+	1	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	exon	1300138	1300159	.	+	.	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
Ledus.S4	AUGUSTUS	stop_codon	1300160	1300162	.	+	0	transcript_id "Ledus.S4G018600.t1"; gene_id "Ledus.S4G018600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9800.t1 is derived from g10830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9924578	9925629	.	-	.	Ledus.S3G127700
Ledus.S3	AUGUSTUS	transcript	9924578	9925629	.	-	.	transcript_id "Ledus.S3G127700.t1"; gene_id "Ledus.S3G127700"
Ledus.S3	AUGUSTUS	stop_codon	9924575	9924577	.	-	0	transcript_id "Ledus.S3G127700.t1"; gene_id "Ledus.S3G127700"
Ledus.S3	AUGUSTUS	CDS	9924578	9925039	0.67	-	0	transcript_id "Ledus.S3G127700.t1"; gene_id "Ledus.S3G127700"
Ledus.S3	AUGUSTUS	exon	9924578	9925039	.	-	.	transcript_id "Ledus.S3G127700.t1"; gene_id "Ledus.S3G127700"
Ledus.S3	AUGUSTUS	intron	9925040	9925299	.	-	.	transcript_id "Ledus.S3G127700.t1"; gene_id "Ledus.S3G127700"
Ledus.S3	AUGUSTUS	CDS	9925300	9925629	0.31	-	0	transcript_id "Ledus.S3G127700.t1"; gene_id "Ledus.S3G127700"
Ledus.S3	AUGUSTUS	exon	9925300	9925629	.	-	.	transcript_id "Ledus.S3G127700.t1"; gene_id "Ledus.S3G127700"
Ledus.S3	AUGUSTUS	start_codon	9925627	9925629	.	-	0	transcript_id "Ledus.S3G127700.t1"; gene_id "Ledus.S3G127700"
# This transcript jg4971.t2 is derived from g2409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4972.t1 is derived from g2410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20931741	20935359	.	-	.	Ledus.S1G239300
Ledus.S1	AUGUSTUS	transcript	20931741	20935359	.	-	.	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	stop_codon	20931738	20931740	.	-	0	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	CDS	20931741	20932046	1	-	0	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	exon	20931741	20932046	.	-	.	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	intron	20932047	20932144	.	-	.	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	CDS	20932145	20932209	0.92	-	2	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	exon	20932145	20932209	.	-	.	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	intron	20932210	20932316	.	-	.	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	CDS	20932317	20932368	0.85	-	0	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	exon	20932317	20932368	.	-	.	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	intron	20932369	20934819	.	-	.	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	CDS	20934820	20935359	0.78	-	0	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	exon	20934820	20935359	.	-	.	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
Ledus.S1	AUGUSTUS	start_codon	20935357	20935359	.	-	0	transcript_id "Ledus.S1G239300.t1"; gene_id "Ledus.S1G239300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3455.t1 is derived from g890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8470162	8472573	.	-	.	Ledus.S1G087600
Ledus.S1	AUGUSTUS	transcript	8470162	8472573	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	stop_codon	8470159	8470161	.	-	0	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	CDS	8470162	8470323	1	-	0	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	exon	8470162	8470323	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	intron	8470324	8470406	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	CDS	8470407	8470534	0.99	-	2	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	exon	8470407	8470534	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	intron	8470535	8470636	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	CDS	8470637	8470720	0.75	-	2	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	exon	8470637	8470720	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	intron	8470721	8470799	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	CDS	8470800	8470998	0.44	-	0	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	exon	8470800	8470998	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	intron	8470999	8471095	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	CDS	8471096	8471161	1	-	0	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	exon	8471096	8471161	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	intron	8471162	8471259	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	CDS	8471260	8471347	1	-	1	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	exon	8471260	8471347	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	intron	8471348	8471468	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	CDS	8471469	8471533	1	-	0	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	exon	8471469	8471533	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	intron	8471534	8471676	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	CDS	8471677	8471742	1	-	0	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	exon	8471677	8471742	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	intron	8471743	8471820	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	CDS	8471821	8471894	0.97	-	2	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	exon	8471821	8471894	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	intron	8471895	8472000	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	CDS	8472001	8472034	0.97	-	0	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	exon	8472001	8472034	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	intron	8472035	8472143	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	CDS	8472144	8472245	1	-	0	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	exon	8472144	8472245	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	intron	8472246	8472318	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	CDS	8472319	8472573	1	-	0	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	exon	8472319	8472573	.	-	.	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
Ledus.S1	AUGUSTUS	start_codon	8472571	8472573	.	-	0	transcript_id "Ledus.S1G087600.t1"; gene_id "Ledus.S1G087600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg2890.t1 is derived from g325.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4412314	4416502	.	-	.	Ledus.S1G031100
Ledus.S1	AUGUSTUS	transcript	4412314	4416363	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	stop_codon	4412311	4412313	.	-	0	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4412314	4412934	0.87	-	0	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4412314	4412934	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4412935	4413098	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413099	4413211	0.99	-	2	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413099	4413211	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413212	4413381	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413382	4413463	1	-	0	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413382	4413463	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413464	4413562	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413563	4413670	1	-	0	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413563	4413670	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413671	4413757	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413758	4413815	1	-	1	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413758	4413815	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413816	4413928	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413929	4414024	1	-	1	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413929	4414024	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4414025	4414116	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4414117	4414190	1	-	0	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4414117	4414190	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4414191	4414353	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4414354	4414416	1	-	0	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4414354	4414416	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4414417	4415430	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4415431	4415640	1	-	0	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4415431	4415640	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4415641	4415973	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4415974	4416070	0.53	-	1	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4415974	4416070	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4416071	4416206	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4416207	4416261	0.52	-	2	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4416207	4416261	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4416262	4416347	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4416348	4416363	0.88	-	0	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4416348	4416363	.	-	.	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	start_codon	4416361	4416363	.	-	0	transcript_id "Ledus.S1G031100.t1"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	transcript	4412314	4416363	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	stop_codon	4412311	4412313	.	-	0	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4412314	4412934	0.77	-	0	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4412314	4412934	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4412935	4413098	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413099	4413211	1	-	2	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413099	4413211	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413212	4413381	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413382	4413463	1	-	0	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413382	4413463	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413464	4413562	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413563	4413670	1	-	0	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413563	4413670	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413671	4413757	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413758	4413815	1	-	1	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413758	4413815	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413816	4413928	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413929	4414024	1	-	1	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413929	4414024	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4414025	4414116	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4414117	4414214	1	-	0	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4414117	4414214	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4414215	4414353	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4414354	4414416	1	-	0	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4414354	4414416	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4414417	4415430	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4415431	4415640	1	-	0	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4415431	4415640	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4415641	4415973	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4415974	4416070	0.53	-	1	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4415974	4416070	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4416071	4416206	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4416207	4416261	0.52	-	2	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4416207	4416261	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4416262	4416347	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4416348	4416363	0.9	-	0	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4416348	4416363	.	-	.	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	start_codon	4416361	4416363	.	-	0	transcript_id "Ledus.S1G031100.t2"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	transcript	4412314	4416502	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	stop_codon	4412311	4412313	.	-	0	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4412314	4412934	0.87	-	0	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4412314	4412934	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4412935	4413098	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413099	4413211	1	-	2	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413099	4413211	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413212	4413381	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413382	4413463	1	-	0	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413382	4413463	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413464	4413562	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413563	4413670	1	-	0	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413563	4413670	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413671	4413757	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413758	4413815	1	-	1	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413758	4413815	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413816	4413928	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413929	4414024	1	-	1	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413929	4414024	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4414025	4414116	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4414117	4414190	0.74	-	0	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4414117	4414190	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4414191	4414353	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4414354	4414416	1	-	0	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4414354	4414416	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4414417	4415430	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4415431	4415640	1	-	0	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4415431	4415640	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4415641	4415973	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4415974	4416070	0.44	-	1	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4415974	4416070	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4416071	4416206	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4416207	4416261	0.41	-	2	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4416207	4416261	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4416262	4416405	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4416406	4416502	0.75	-	0	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4416406	4416502	.	-	.	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	start_codon	4416500	4416502	.	-	0	transcript_id "Ledus.S1G031100.t3"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	transcript	4412314	4416363	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	stop_codon	4412311	4412313	.	-	0	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4412314	4412934	0.67	-	0	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4412314	4412934	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4412935	4413104	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413105	4413211	0.83	-	2	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413105	4413211	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413212	4413381	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413382	4413463	1	-	0	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413382	4413463	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413464	4413562	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413563	4413670	1	-	0	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413563	4413670	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413671	4413757	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413758	4413815	1	-	1	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413758	4413815	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4413816	4413928	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4413929	4414024	1	-	1	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4413929	4414024	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4414025	4414116	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4414117	4414190	0.71	-	0	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4414117	4414190	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4414191	4414353	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4414354	4414416	1	-	0	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4414354	4414416	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4414417	4415430	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4415431	4415640	1	-	0	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4415431	4415640	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4415641	4415973	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4415974	4416070	0.57	-	1	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4415974	4416070	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4416071	4416206	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4416207	4416261	0.57	-	2	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4416207	4416261	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	intron	4416262	4416347	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	CDS	4416348	4416363	0.92	-	0	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	exon	4416348	4416363	.	-	.	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
Ledus.S1	AUGUSTUS	start_codon	4416361	4416363	.	-	0	transcript_id "Ledus.S1G031100.t4"; gene_id "Ledus.S1G031100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1131.t1 is derived from g7992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7851545	7853004	.	-	.	Ledus.S2G101300
Ledus.S2	AUGUSTUS	transcript	7851545	7853004	.	-	.	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	stop_codon	7851542	7851544	.	-	0	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	CDS	7851545	7851685	0.69	-	0	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	exon	7851545	7851685	.	-	.	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	intron	7851686	7851895	.	-	.	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	CDS	7851896	7851986	0.66	-	1	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	exon	7851896	7851986	.	-	.	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	intron	7851987	7852129	.	-	.	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	CDS	7852130	7852248	0.83	-	0	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	exon	7852130	7852248	.	-	.	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	intron	7852249	7852370	.	-	.	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	CDS	7852371	7852504	0.97	-	2	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	exon	7852371	7852504	.	-	.	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	intron	7852505	7852665	.	-	.	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	CDS	7852666	7852753	1	-	0	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	exon	7852666	7852753	.	-	.	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	intron	7852754	7852881	.	-	.	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	CDS	7852882	7853004	0.88	-	0	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	exon	7852882	7853004	.	-	.	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
Ledus.S2	AUGUSTUS	start_codon	7853002	7853004	.	-	0	transcript_id "Ledus.S2G101300.t1"; gene_id "Ledus.S2G101300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12947.t1 is derived from g6757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	510224	510433	.	+	.	Ledus.S6G000900
Ledus.S6	AUGUSTUS	transcript	510224	510433	.	+	.	transcript_id "Ledus.S6G000900.t1"; gene_id "Ledus.S6G000900"
Ledus.S6	AUGUSTUS	start_codon	510224	510226	.	+	0	transcript_id "Ledus.S6G000900.t1"; gene_id "Ledus.S6G000900"
Ledus.S6	AUGUSTUS	CDS	510224	510433	0.96	+	0	transcript_id "Ledus.S6G000900.t1"; gene_id "Ledus.S6G000900"
Ledus.S6	AUGUSTUS	exon	510224	510433	.	+	.	transcript_id "Ledus.S6G000900.t1"; gene_id "Ledus.S6G000900"
Ledus.S6	AUGUSTUS	stop_codon	510434	510436	.	+	0	transcript_id "Ledus.S6G000900.t1"; gene_id "Ledus.S6G000900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6593.t1 is derived from g4036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32565671	32568855	.	+	.	Ledus.S1G401400
Ledus.S1	AUGUSTUS	transcript	32565671	32568855	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	start_codon	32565671	32565673	.	+	0	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	CDS	32565671	32565693	0.86	+	0	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	exon	32565671	32565693	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	intron	32565694	32566107	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	CDS	32566108	32566246	1	+	1	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	exon	32566108	32566246	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	intron	32566247	32566706	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	CDS	32566707	32567022	0.98	+	0	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	exon	32566707	32567022	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	intron	32567023	32567308	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	CDS	32567309	32567570	1	+	2	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	exon	32567309	32567570	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	intron	32567571	32567693	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	CDS	32567694	32567809	1	+	1	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	exon	32567694	32567809	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	intron	32567810	32567995	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	CDS	32567996	32568105	1	+	2	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	exon	32567996	32568105	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	intron	32568106	32568225	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	CDS	32568226	32568403	0.95	+	0	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	exon	32568226	32568403	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	intron	32568404	32568494	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	CDS	32568495	32568624	1	+	2	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	exon	32568495	32568624	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	intron	32568625	32568704	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	CDS	32568705	32568855	1	+	1	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	exon	32568705	32568855	.	+	.	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
Ledus.S1	AUGUSTUS	stop_codon	32568856	32568858	.	+	0	transcript_id "Ledus.S1G401400.t1"; gene_id "Ledus.S1G401400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10988.t1 is derived from g4606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1019495	1020250	.	-	.	Ledus.S4G014400
Ledus.S4	AUGUSTUS	transcript	1019495	1020250	.	-	.	transcript_id "Ledus.S4G014400.t1"; gene_id "Ledus.S4G014400"
Ledus.S4	AUGUSTUS	stop_codon	1019492	1019494	.	-	0	transcript_id "Ledus.S4G014400.t1"; gene_id "Ledus.S4G014400"
Ledus.S4	AUGUSTUS	CDS	1019495	1019567	0.71	-	1	transcript_id "Ledus.S4G014400.t1"; gene_id "Ledus.S4G014400"
Ledus.S4	AUGUSTUS	exon	1019495	1019567	.	-	.	transcript_id "Ledus.S4G014400.t1"; gene_id "Ledus.S4G014400"
Ledus.S4	AUGUSTUS	intron	1019568	1019645	.	-	.	transcript_id "Ledus.S4G014400.t1"; gene_id "Ledus.S4G014400"
Ledus.S4	AUGUSTUS	CDS	1019646	1019797	0.7	-	0	transcript_id "Ledus.S4G014400.t1"; gene_id "Ledus.S4G014400"
Ledus.S4	AUGUSTUS	exon	1019646	1019797	.	-	.	transcript_id "Ledus.S4G014400.t1"; gene_id "Ledus.S4G014400"
Ledus.S4	AUGUSTUS	intron	1019798	1019899	.	-	.	transcript_id "Ledus.S4G014400.t1"; gene_id "Ledus.S4G014400"
Ledus.S4	AUGUSTUS	CDS	1019900	1020250	0.66	-	0	transcript_id "Ledus.S4G014400.t1"; gene_id "Ledus.S4G014400"
Ledus.S4	AUGUSTUS	exon	1019900	1020250	.	-	.	transcript_id "Ledus.S4G014400.t1"; gene_id "Ledus.S4G014400"
Ledus.S4	AUGUSTUS	start_codon	1020248	1020250	.	-	0	transcript_id "Ledus.S4G014400.t1"; gene_id "Ledus.S4G014400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5142.t1 is derived from g2581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21924304	21928199	.	-	.	Ledus.S1G256300
Ledus.S1	AUGUSTUS	transcript	21924304	21928199	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	stop_codon	21924301	21924303	.	-	0	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21924304	21924804	1	-	0	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21924304	21924804	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21924805	21924903	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21924904	21925092	1	-	0	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21924904	21925092	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21925093	21925192	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21925193	21925345	0.98	-	0	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21925193	21925345	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21925346	21925461	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21925462	21925647	0.53	-	0	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21925462	21925647	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21925648	21925733	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21925734	21925867	1	-	2	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21925734	21925867	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21925868	21925981	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21925982	21926465	1	-	0	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21925982	21926465	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21926466	21926578	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21926579	21926657	1	-	1	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21926579	21926657	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21926658	21926745	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21926746	21927203	1	-	0	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21926746	21927203	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21927204	21927316	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21927317	21927497	1	-	1	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21927317	21927497	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21927498	21927593	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21927594	21927766	1	-	0	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21927594	21927766	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21927767	21927860	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21927861	21927941	1	-	0	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21927861	21927941	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21927942	21928160	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21928161	21928199	0.68	-	0	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21928161	21928199	.	-	.	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	start_codon	21928197	21928199	.	-	0	transcript_id "Ledus.S1G256300.t1"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	transcript	21924304	21928199	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	stop_codon	21924301	21924303	.	-	0	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21924304	21924804	0.99	-	0	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21924304	21924804	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21924805	21924903	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21924904	21925092	1	-	0	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21924904	21925092	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21925093	21925192	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21925193	21925345	0.99	-	0	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21925193	21925345	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21925346	21925461	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21925462	21925647	0.45	-	0	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21925462	21925647	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21925648	21925733	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21925734	21925867	1	-	2	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21925734	21925867	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21925868	21925981	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21925982	21926465	1	-	0	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21925982	21926465	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21926466	21926578	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21926579	21926657	0.99	-	1	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21926579	21926657	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21926658	21926745	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21926746	21927203	1	-	0	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21926746	21927203	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21927204	21927316	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21927317	21927497	1	-	1	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21927317	21927497	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21927498	21927593	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21927594	21927736	0.98	-	0	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21927594	21927736	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21927737	21927860	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21927861	21927941	1	-	0	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21927861	21927941	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	intron	21927942	21928160	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	CDS	21928161	21928199	0.77	-	0	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	exon	21928161	21928199	.	-	.	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
Ledus.S1	AUGUSTUS	start_codon	21928197	21928199	.	-	0	transcript_id "Ledus.S1G256300.t2"; gene_id "Ledus.S1G256300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8903.t1 is derived from g9933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2967296	2968363	.	-	.	Ledus.S3G038000
Ledus.S3	AUGUSTUS	transcript	2967296	2968363	.	-	.	transcript_id "Ledus.S3G038000.t1"; gene_id "Ledus.S3G038000"
Ledus.S3	AUGUSTUS	stop_codon	2967293	2967295	.	-	0	transcript_id "Ledus.S3G038000.t1"; gene_id "Ledus.S3G038000"
Ledus.S3	AUGUSTUS	CDS	2967296	2968363	1	-	0	transcript_id "Ledus.S3G038000.t1"; gene_id "Ledus.S3G038000"
Ledus.S3	AUGUSTUS	exon	2967296	2968363	.	-	.	transcript_id "Ledus.S3G038000.t1"; gene_id "Ledus.S3G038000"
Ledus.S3	AUGUSTUS	start_codon	2968361	2968363	.	-	0	transcript_id "Ledus.S3G038000.t1"; gene_id "Ledus.S3G038000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7619.t1 is derived from g12290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4403227	4403571	.	-	.	Ledus.S5G039700
Ledus.S5	AUGUSTUS	transcript	4403227	4403571	.	-	.	transcript_id "Ledus.S5G039700.t1"; gene_id "Ledus.S5G039700"
Ledus.S5	AUGUSTUS	stop_codon	4403224	4403226	.	-	0	transcript_id "Ledus.S5G039700.t1"; gene_id "Ledus.S5G039700"
Ledus.S5	AUGUSTUS	CDS	4403227	4403571	0.67	-	0	transcript_id "Ledus.S5G039700.t1"; gene_id "Ledus.S5G039700"
Ledus.S5	AUGUSTUS	exon	4403227	4403571	.	-	.	transcript_id "Ledus.S5G039700.t1"; gene_id "Ledus.S5G039700"
Ledus.S5	AUGUSTUS	start_codon	4403569	4403571	.	-	0	transcript_id "Ledus.S5G039700.t1"; gene_id "Ledus.S5G039700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9607.t1 is derived from g10637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8378456	8380355	.	+	.	Ledus.S3G108400
Ledus.S3	AUGUSTUS	transcript	8378456	8380355	.	+	.	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	start_codon	8378456	8378458	.	+	0	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	CDS	8378456	8378914	0.48	+	0	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	exon	8378456	8378914	.	+	.	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	intron	8378915	8379027	.	+	.	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	CDS	8379028	8379143	0.66	+	0	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	exon	8379028	8379143	.	+	.	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	intron	8379144	8379239	.	+	.	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	CDS	8379240	8380181	0.36	+	1	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	exon	8379240	8380181	.	+	.	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	intron	8380182	8380351	.	+	.	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	CDS	8380352	8380355	0.59	+	1	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	exon	8380352	8380355	.	+	.	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
Ledus.S3	AUGUSTUS	stop_codon	8380356	8380358	.	+	0	transcript_id "Ledus.S3G108400.t1"; gene_id "Ledus.S3G108400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg421.t1 is derived from g7282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2371309	2371506	.	-	.	Ledus.S2G030300
Ledus.S2	AUGUSTUS	transcript	2371309	2371506	.	-	.	transcript_id "Ledus.S2G030300.t1"; gene_id "Ledus.S2G030300"
Ledus.S2	AUGUSTUS	stop_codon	2371306	2371308	.	-	0	transcript_id "Ledus.S2G030300.t1"; gene_id "Ledus.S2G030300"
Ledus.S2	AUGUSTUS	CDS	2371309	2371506	0.89	-	0	transcript_id "Ledus.S2G030300.t1"; gene_id "Ledus.S2G030300"
Ledus.S2	AUGUSTUS	exon	2371309	2371506	.	-	.	transcript_id "Ledus.S2G030300.t1"; gene_id "Ledus.S2G030300"
Ledus.S2	AUGUSTUS	start_codon	2371504	2371506	.	-	0	transcript_id "Ledus.S2G030300.t1"; gene_id "Ledus.S2G030300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10315.t1 is derived from g11345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14198859	14201264	.	+	.	Ledus.S3G179200
Ledus.S3	AUGUSTUS	transcript	14198859	14201264	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	start_codon	14198859	14198861	.	+	0	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	CDS	14198859	14198986	0.82	+	0	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	exon	14198859	14198986	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	intron	14198987	14199083	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	CDS	14199084	14199207	1	+	1	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	exon	14199084	14199207	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	intron	14199208	14199313	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	CDS	14199314	14199400	1	+	0	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	exon	14199314	14199400	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	intron	14199401	14199564	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	CDS	14199565	14199940	0.95	+	0	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	exon	14199565	14199940	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	intron	14199941	14200051	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	CDS	14200052	14200164	0.97	+	2	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	exon	14200052	14200164	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	intron	14200165	14200384	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	CDS	14200385	14200582	1	+	0	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	exon	14200385	14200582	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	intron	14200583	14200667	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	CDS	14200668	14200801	0.99	+	0	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	exon	14200668	14200801	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	intron	14200802	14200903	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	CDS	14200904	14200996	0.94	+	1	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	exon	14200904	14200996	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	intron	14200997	14201104	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	CDS	14201105	14201264	0.94	+	1	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	exon	14201105	14201264	.	+	.	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
Ledus.S3	AUGUSTUS	stop_codon	14201265	14201267	.	+	0	transcript_id "Ledus.S3G179200.t1"; gene_id "Ledus.S3G179200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1544.t1 is derived from g8405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10872305	10873231	.	+	.	Ledus.S2G142600
Ledus.S2	AUGUSTUS	transcript	10872305	10873231	.	+	.	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	start_codon	10872305	10872307	.	+	0	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	CDS	10872305	10872338	0.99	+	0	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	exon	10872305	10872338	.	+	.	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	intron	10872339	10872441	.	+	.	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	CDS	10872442	10872653	0.99	+	2	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	exon	10872442	10872653	.	+	.	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	intron	10872654	10872843	.	+	.	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	CDS	10872844	10872969	0.67	+	0	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	exon	10872844	10872969	.	+	.	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	intron	10872970	10873174	.	+	.	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	CDS	10873175	10873231	0.65	+	0	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	exon	10873175	10873231	.	+	.	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
Ledus.S2	AUGUSTUS	stop_codon	10873232	10873234	.	+	0	transcript_id "Ledus.S2G142600.t1"; gene_id "Ledus.S2G142600"
# This transcript jg2711.t2 is derived from g144.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2712.t1 is derived from g145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2331124	2332223	.	-	.	Ledus.S1G013300
Ledus.S1	AUGUSTUS	transcript	2331124	2332223	.	-	.	transcript_id "Ledus.S1G013300.t1"; gene_id "Ledus.S1G013300"
Ledus.S1	AUGUSTUS	stop_codon	2331121	2331123	.	-	0	transcript_id "Ledus.S1G013300.t1"; gene_id "Ledus.S1G013300"
Ledus.S1	AUGUSTUS	CDS	2331124	2331158	0.92	-	2	transcript_id "Ledus.S1G013300.t1"; gene_id "Ledus.S1G013300"
Ledus.S1	AUGUSTUS	exon	2331124	2331158	.	-	.	transcript_id "Ledus.S1G013300.t1"; gene_id "Ledus.S1G013300"
Ledus.S1	AUGUSTUS	intron	2331159	2331661	.	-	.	transcript_id "Ledus.S1G013300.t1"; gene_id "Ledus.S1G013300"
Ledus.S1	AUGUSTUS	CDS	2331662	2332223	1	-	0	transcript_id "Ledus.S1G013300.t1"; gene_id "Ledus.S1G013300"
Ledus.S1	AUGUSTUS	exon	2331662	2332223	.	-	.	transcript_id "Ledus.S1G013300.t1"; gene_id "Ledus.S1G013300"
Ledus.S1	AUGUSTUS	start_codon	2332221	2332223	.	-	0	transcript_id "Ledus.S1G013300.t1"; gene_id "Ledus.S1G013300"
# This transcript jg9789.t1 is derived from g10819.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9833013	9833534	.	+	.	Ledus.S3G126600
Ledus.S3	AUGUSTUS	transcript	9833013	9833534	.	+	.	transcript_id "Ledus.S3G126600.t1"; gene_id "Ledus.S3G126600"
Ledus.S3	AUGUSTUS	start_codon	9833013	9833015	.	+	0	transcript_id "Ledus.S3G126600.t1"; gene_id "Ledus.S3G126600"
Ledus.S3	AUGUSTUS	CDS	9833013	9833534	1	+	0	transcript_id "Ledus.S3G126600.t1"; gene_id "Ledus.S3G126600"
Ledus.S3	AUGUSTUS	exon	9833013	9833534	.	+	.	transcript_id "Ledus.S3G126600.t1"; gene_id "Ledus.S3G126600"
Ledus.S3	AUGUSTUS	stop_codon	9833535	9833537	.	+	0	transcript_id "Ledus.S3G126600.t1"; gene_id "Ledus.S3G126600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9763.t1 is derived from g10793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9653894	9654603	.	+	.	Ledus.S3G124000
Ledus.S3	AUGUSTUS	transcript	9653894	9654603	.	+	.	transcript_id "Ledus.S3G124000.t1"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	start_codon	9653894	9653896	.	+	0	transcript_id "Ledus.S3G124000.t1"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	CDS	9653894	9654082	1	+	0	transcript_id "Ledus.S3G124000.t1"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	exon	9653894	9654082	.	+	.	transcript_id "Ledus.S3G124000.t1"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	intron	9654083	9654165	.	+	.	transcript_id "Ledus.S3G124000.t1"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	CDS	9654166	9654311	1	+	0	transcript_id "Ledus.S3G124000.t1"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	exon	9654166	9654311	.	+	.	transcript_id "Ledus.S3G124000.t1"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	intron	9654312	9654404	.	+	.	transcript_id "Ledus.S3G124000.t1"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	CDS	9654405	9654603	0.62	+	1	transcript_id "Ledus.S3G124000.t1"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	exon	9654405	9654603	.	+	.	transcript_id "Ledus.S3G124000.t1"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	stop_codon	9654604	9654606	.	+	0	transcript_id "Ledus.S3G124000.t1"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	transcript	9653894	9654603	.	+	.	transcript_id "Ledus.S3G124000.t2"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	start_codon	9653894	9653896	.	+	0	transcript_id "Ledus.S3G124000.t2"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	CDS	9653894	9654001	0.76	+	0	transcript_id "Ledus.S3G124000.t2"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	exon	9653894	9654001	.	+	.	transcript_id "Ledus.S3G124000.t2"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	intron	9654002	9654165	.	+	.	transcript_id "Ledus.S3G124000.t2"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	CDS	9654166	9654311	1	+	0	transcript_id "Ledus.S3G124000.t2"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	exon	9654166	9654311	.	+	.	transcript_id "Ledus.S3G124000.t2"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	intron	9654312	9654404	.	+	.	transcript_id "Ledus.S3G124000.t2"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	CDS	9654405	9654603	0.58	+	1	transcript_id "Ledus.S3G124000.t2"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	exon	9654405	9654603	.	+	.	transcript_id "Ledus.S3G124000.t2"; gene_id "Ledus.S3G124000"
Ledus.S3	AUGUSTUS	stop_codon	9654604	9654606	.	+	0	transcript_id "Ledus.S3G124000.t2"; gene_id "Ledus.S3G124000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12170.t1 is derived from g5789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10123741	10125910	.	+	.	Ledus.S4G132600
Ledus.S4	AUGUSTUS	transcript	10123741	10125910	.	+	.	transcript_id "Ledus.S4G132600.t1"; gene_id "Ledus.S4G132600"
Ledus.S4	AUGUSTUS	start_codon	10123741	10123743	.	+	0	transcript_id "Ledus.S4G132600.t1"; gene_id "Ledus.S4G132600"
Ledus.S4	AUGUSTUS	CDS	10123741	10123775	0.76	+	0	transcript_id "Ledus.S4G132600.t1"; gene_id "Ledus.S4G132600"
Ledus.S4	AUGUSTUS	exon	10123741	10123775	.	+	.	transcript_id "Ledus.S4G132600.t1"; gene_id "Ledus.S4G132600"
Ledus.S4	AUGUSTUS	intron	10123776	10123873	.	+	.	transcript_id "Ledus.S4G132600.t1"; gene_id "Ledus.S4G132600"
Ledus.S4	AUGUSTUS	CDS	10123874	10124575	0.76	+	1	transcript_id "Ledus.S4G132600.t1"; gene_id "Ledus.S4G132600"
Ledus.S4	AUGUSTUS	exon	10123874	10124575	.	+	.	transcript_id "Ledus.S4G132600.t1"; gene_id "Ledus.S4G132600"
Ledus.S4	AUGUSTUS	intron	10124576	10124718	.	+	.	transcript_id "Ledus.S4G132600.t1"; gene_id "Ledus.S4G132600"
Ledus.S4	AUGUSTUS	CDS	10124719	10125910	0.99	+	1	transcript_id "Ledus.S4G132600.t1"; gene_id "Ledus.S4G132600"
Ledus.S4	AUGUSTUS	exon	10124719	10125910	.	+	.	transcript_id "Ledus.S4G132600.t1"; gene_id "Ledus.S4G132600"
Ledus.S4	AUGUSTUS	stop_codon	10125911	10125913	.	+	0	transcript_id "Ledus.S4G132600.t1"; gene_id "Ledus.S4G132600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4334.t1 is derived from g1770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16426700	16430759	.	-	.	Ledus.S1G175500
Ledus.S1	AUGUSTUS	transcript	16426700	16430759	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	stop_codon	16426697	16426699	.	-	0	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	CDS	16426700	16427427	0.64	-	2	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	exon	16426700	16427427	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	intron	16427428	16427512	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	CDS	16427513	16428382	0.93	-	2	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	exon	16427513	16428382	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	intron	16428383	16428446	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	CDS	16428447	16428531	0.69	-	0	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	exon	16428447	16428531	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	intron	16428532	16428884	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	CDS	16428885	16429166	0.73	-	0	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	exon	16428885	16429166	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	intron	16429167	16429252	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	CDS	16429253	16429473	1	-	2	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	exon	16429253	16429473	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	intron	16429474	16429629	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	CDS	16429630	16429886	0.96	-	1	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	exon	16429630	16429886	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	intron	16429887	16429972	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	CDS	16429973	16430068	1	-	1	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	exon	16429973	16430068	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	intron	16430069	16430279	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	CDS	16430280	16430389	1	-	0	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	exon	16430280	16430389	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	intron	16430390	16430579	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	CDS	16430580	16430759	0.63	-	0	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	exon	16430580	16430759	.	-	.	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
Ledus.S1	AUGUSTUS	start_codon	16430757	16430759	.	-	0	transcript_id "Ledus.S1G175500.t1"; gene_id "Ledus.S1G175500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1601.t1 is derived from g8462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11311688	11316741	.	-	.	Ledus.S2G148300
Ledus.S2	AUGUSTUS	transcript	11311688	11316741	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	stop_codon	11311685	11311687	.	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11311688	11311999	1	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11311688	11311999	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11312000	11312087	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11312088	11312150	1	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11312088	11312150	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11312151	11312240	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11312241	11312304	1	-	1	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11312241	11312304	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11312305	11312415	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11312416	11312459	0.95	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11312416	11312459	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11312460	11312553	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11312554	11312621	1	-	2	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11312554	11312621	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11312622	11312699	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11312700	11312823	1	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11312700	11312823	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11312824	11312902	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11312903	11312964	1	-	2	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11312903	11312964	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11312965	11313051	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11313052	11313100	1	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11313052	11313100	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11313101	11313195	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11313196	11313308	1	-	2	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11313196	11313308	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11313309	11313399	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11313400	11313466	1	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11313400	11313466	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11313467	11313548	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11313549	11313620	1	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11313549	11313620	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11313621	11313706	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11313707	11313934	1	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11313707	11313934	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11313935	11314012	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11314013	11314219	0.39	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11314013	11314219	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11314220	11314457	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11314458	11314616	0.51	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11314458	11314616	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11314617	11314753	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11314754	11314822	1	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11314754	11314822	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11314823	11315012	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11315013	11315099	1	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11315013	11315099	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11315100	11315206	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11315207	11315295	0.98	-	2	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11315207	11315295	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11315296	11315392	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11315393	11315505	1	-	1	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11315393	11315505	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11315506	11315601	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11315602	11315675	1	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11315602	11315675	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11315676	11315857	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11315858	11315956	0.99	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11315858	11315956	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11315957	11316064	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11316065	11316130	1	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11316065	11316130	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11316131	11316223	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11316224	11316316	0.99	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11316224	11316316	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11316317	11316446	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11316447	11316560	1	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11316447	11316560	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	intron	11316561	11316642	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	CDS	11316643	11316741	0.6	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	exon	11316643	11316741	.	-	.	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
Ledus.S2	AUGUSTUS	start_codon	11316739	11316741	.	-	0	transcript_id "Ledus.S2G148300.t1"; gene_id "Ledus.S2G148300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1359.t1 is derived from g8220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9457338	9458590	.	-	.	Ledus.S2G124100
Ledus.S2	AUGUSTUS	transcript	9457338	9458590	.	-	.	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	stop_codon	9457335	9457337	.	-	0	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	CDS	9457338	9457472	0.99	-	0	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	exon	9457338	9457472	.	-	.	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	intron	9457473	9457588	.	-	.	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	CDS	9457589	9457658	1	-	1	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	exon	9457589	9457658	.	-	.	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	intron	9457659	9457798	.	-	.	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	CDS	9457799	9457882	1	-	1	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	exon	9457799	9457882	.	-	.	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	intron	9457883	9458003	.	-	.	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	CDS	9458004	9458179	0.99	-	0	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	exon	9458004	9458179	.	-	.	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	intron	9458180	9458365	.	-	.	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	CDS	9458366	9458590	0.92	-	0	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	exon	9458366	9458590	.	-	.	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
Ledus.S2	AUGUSTUS	start_codon	9458588	9458590	.	-	0	transcript_id "Ledus.S2G124100.t1"; gene_id "Ledus.S2G124100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8531.t1 is derived from g9561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	53518	57577	.	+	.	Ledus.S3G000800
Ledus.S3	AUGUSTUS	transcript	53518	57577	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	start_codon	53518	53520	.	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	53518	53815	0.66	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	53518	53815	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	53816	53992	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	53993	54222	0.98	+	2	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	53993	54222	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	54223	54326	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	54327	54443	1	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	54327	54443	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	54444	54617	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	54618	54719	1	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	54618	54719	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	54720	54815	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	54816	54932	1	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	54816	54932	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	54933	55017	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	55018	55248	1	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	55018	55248	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	55249	55396	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	55397	55521	0.83	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	55397	55521	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	55522	55596	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	55597	55684	0.94	+	1	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	55597	55684	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	55685	55798	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	55799	55930	1	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	55799	55930	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	55931	56079	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	56080	56192	1	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	56080	56192	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	56193	56301	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	56302	56403	1	+	1	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	56302	56403	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	56404	56490	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	56491	56552	0.99	+	1	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	56491	56552	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	56553	56680	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	56681	56752	1	+	2	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	56681	56752	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	56753	56848	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	56849	56922	0.98	+	2	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	56849	56922	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	56923	57034	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	57035	57091	0.99	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	57035	57091	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	57092	57173	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	57174	57251	1	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	57174	57251	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	57252	57331	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	57332	57409	1	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	57332	57409	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	intron	57410	57505	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	CDS	57506	57577	0.98	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	exon	57506	57577	.	+	.	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
Ledus.S3	AUGUSTUS	stop_codon	57578	57580	.	+	0	transcript_id "Ledus.S3G000800.t1"; gene_id "Ledus.S3G000800"
# This transcript jg7410.t2 is derived from g12081.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7410.t3 is derived from g12081.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7411.t1 is derived from g12082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2137193	2138911	.	-	.	Ledus.S5G018900
Ledus.S5	AUGUSTUS	transcript	2137193	2138911	.	-	.	transcript_id "Ledus.S5G018900.t1"; gene_id "Ledus.S5G018900"
Ledus.S5	AUGUSTUS	stop_codon	2137190	2137192	.	-	0	transcript_id "Ledus.S5G018900.t1"; gene_id "Ledus.S5G018900"
Ledus.S5	AUGUSTUS	CDS	2137193	2138911	1	-	0	transcript_id "Ledus.S5G018900.t1"; gene_id "Ledus.S5G018900"
Ledus.S5	AUGUSTUS	exon	2137193	2138911	.	-	.	transcript_id "Ledus.S5G018900.t1"; gene_id "Ledus.S5G018900"
Ledus.S5	AUGUSTUS	start_codon	2138909	2138911	.	-	0	transcript_id "Ledus.S5G018900.t1"; gene_id "Ledus.S5G018900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7942.t1 is derived from g12613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7997405	7998325	.	-	.	Ledus.S5G072000
Ledus.S5	AUGUSTUS	transcript	7997405	7998325	.	-	.	transcript_id "Ledus.S5G072000.t1"; gene_id "Ledus.S5G072000"
Ledus.S5	AUGUSTUS	stop_codon	7997402	7997404	.	-	0	transcript_id "Ledus.S5G072000.t1"; gene_id "Ledus.S5G072000"
Ledus.S5	AUGUSTUS	CDS	7997405	7998325	0.69	-	0	transcript_id "Ledus.S5G072000.t1"; gene_id "Ledus.S5G072000"
Ledus.S5	AUGUSTUS	exon	7997405	7998325	.	-	.	transcript_id "Ledus.S5G072000.t1"; gene_id "Ledus.S5G072000"
Ledus.S5	AUGUSTUS	start_codon	7998323	7998325	.	-	0	transcript_id "Ledus.S5G072000.t1"; gene_id "Ledus.S5G072000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6857.t1 is derived from g4301.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34732303	34733149	.	+	.	Ledus.S1G427800
Ledus.S1	AUGUSTUS	transcript	34732303	34733149	.	+	.	transcript_id "Ledus.S1G427800.t1"; gene_id "Ledus.S1G427800"
Ledus.S1	AUGUSTUS	start_codon	34732303	34732305	.	+	0	transcript_id "Ledus.S1G427800.t1"; gene_id "Ledus.S1G427800"
Ledus.S1	AUGUSTUS	CDS	34732303	34732391	0.64	+	0	transcript_id "Ledus.S1G427800.t1"; gene_id "Ledus.S1G427800"
Ledus.S1	AUGUSTUS	exon	34732303	34732391	.	+	.	transcript_id "Ledus.S1G427800.t1"; gene_id "Ledus.S1G427800"
Ledus.S1	AUGUSTUS	intron	34732392	34732471	.	+	.	transcript_id "Ledus.S1G427800.t1"; gene_id "Ledus.S1G427800"
Ledus.S1	AUGUSTUS	CDS	34732472	34732617	0.58	+	1	transcript_id "Ledus.S1G427800.t1"; gene_id "Ledus.S1G427800"
Ledus.S1	AUGUSTUS	exon	34732472	34732617	.	+	.	transcript_id "Ledus.S1G427800.t1"; gene_id "Ledus.S1G427800"
Ledus.S1	AUGUSTUS	intron	34732618	34733063	.	+	.	transcript_id "Ledus.S1G427800.t1"; gene_id "Ledus.S1G427800"
Ledus.S1	AUGUSTUS	CDS	34733064	34733149	0.6	+	2	transcript_id "Ledus.S1G427800.t1"; gene_id "Ledus.S1G427800"
Ledus.S1	AUGUSTUS	exon	34733064	34733149	.	+	.	transcript_id "Ledus.S1G427800.t1"; gene_id "Ledus.S1G427800"
Ledus.S1	AUGUSTUS	stop_codon	34733150	34733152	.	+	0	transcript_id "Ledus.S1G427800.t1"; gene_id "Ledus.S1G427800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4624.t1 is derived from g2061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18334643	18336477	.	-	.	Ledus.S1G204500
Ledus.S1	AUGUSTUS	transcript	18334643	18336477	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	stop_codon	18334640	18334642	.	-	0	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	CDS	18334643	18334645	0.52	-	0	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	exon	18334643	18334645	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	intron	18334646	18334720	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	CDS	18334721	18334792	0.55	-	0	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	exon	18334721	18334792	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	intron	18334793	18334873	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	CDS	18334874	18334910	0.57	-	1	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	exon	18334874	18334910	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	intron	18334911	18335022	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	CDS	18335023	18335081	0.59	-	0	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	exon	18335023	18335081	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	intron	18335082	18335271	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	CDS	18335272	18335443	0.6	-	1	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	exon	18335272	18335443	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	intron	18335444	18335694	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	CDS	18335695	18335876	0.89	-	0	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	exon	18335695	18335876	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	intron	18335877	18335982	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	CDS	18335983	18336477	0.62	-	0	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	exon	18335983	18336477	.	-	.	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
Ledus.S1	AUGUSTUS	start_codon	18336475	18336477	.	-	0	transcript_id "Ledus.S1G204500.t1"; gene_id "Ledus.S1G204500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg975.t1 is derived from g7836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6405510	6409423	.	+	.	Ledus.S2G085700
Ledus.S2	AUGUSTUS	transcript	6405510	6409423	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	start_codon	6405510	6405512	.	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6405510	6405860	0.88	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6405510	6405860	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6405861	6406000	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6406001	6406177	0.77	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6406001	6406177	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6406178	6406292	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6406293	6406417	1	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6406293	6406417	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6406418	6406516	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6406517	6406655	1	+	1	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6406517	6406655	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6406656	6406785	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6406786	6406935	1	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6406786	6406935	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6406936	6407018	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6407019	6407072	1	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6407019	6407072	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6407073	6407225	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6407226	6407321	1	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6407226	6407321	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6407322	6407397	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6407398	6407457	1	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6407398	6407457	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6407458	6407550	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6407551	6407625	1	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6407551	6407625	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6407626	6407825	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6407826	6407879	1	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6407826	6407879	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6407880	6407988	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6407989	6408090	1	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6407989	6408090	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6408091	6408165	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6408166	6408735	0.93	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6408166	6408735	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6408736	6408846	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6408847	6408978	1	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6408847	6408978	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6408979	6409062	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6409063	6409170	1	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6409063	6409170	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	intron	6409171	6409273	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	CDS	6409274	6409423	1	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	exon	6409274	6409423	.	+	.	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
Ledus.S2	AUGUSTUS	stop_codon	6409424	6409426	.	+	0	transcript_id "Ledus.S2G085700.t1"; gene_id "Ledus.S2G085700"
# This transcript jg11945.t2 is derived from g5564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11946.t1 is derived from g5565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7935360	7937248	.	-	.	Ledus.S4G110200
Ledus.S4	AUGUSTUS	transcript	7935360	7937248	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	stop_codon	7935357	7935359	.	-	0	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	CDS	7935360	7935617	1	-	0	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	exon	7935360	7935617	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	intron	7935618	7935709	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	CDS	7935710	7935808	1	-	0	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	exon	7935710	7935808	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	intron	7935809	7935886	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	CDS	7935887	7935997	1	-	0	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	exon	7935887	7935997	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	intron	7935998	7936073	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	CDS	7936074	7936241	0.97	-	0	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	exon	7936074	7936241	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	intron	7936242	7936350	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	CDS	7936351	7936511	1	-	2	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	exon	7936351	7936511	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	intron	7936512	7936643	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	CDS	7936644	7936823	1	-	2	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	exon	7936644	7936823	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	intron	7936824	7936926	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	CDS	7936927	7937248	0.72	-	0	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	exon	7936927	7937248	.	-	.	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
Ledus.S4	AUGUSTUS	start_codon	7937246	7937248	.	-	0	transcript_id "Ledus.S4G110200.t1"; gene_id "Ledus.S4G110200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3957.t1 is derived from g1393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13763086	13764825	.	+	.	Ledus.S1G137800
Ledus.S1	AUGUSTUS	transcript	13763086	13764825	.	+	.	transcript_id "Ledus.S1G137800.t1"; gene_id "Ledus.S1G137800"
Ledus.S1	AUGUSTUS	start_codon	13763086	13763088	.	+	0	transcript_id "Ledus.S1G137800.t1"; gene_id "Ledus.S1G137800"
Ledus.S1	AUGUSTUS	CDS	13763086	13764825	1	+	0	transcript_id "Ledus.S1G137800.t1"; gene_id "Ledus.S1G137800"
Ledus.S1	AUGUSTUS	exon	13763086	13764825	.	+	.	transcript_id "Ledus.S1G137800.t1"; gene_id "Ledus.S1G137800"
Ledus.S1	AUGUSTUS	stop_codon	13764826	13764828	.	+	0	transcript_id "Ledus.S1G137800.t1"; gene_id "Ledus.S1G137800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7488.t1 is derived from g12159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3362957	3363193	.	-	.	Ledus.S5G026600
Ledus.S5	AUGUSTUS	transcript	3362957	3363193	.	-	.	transcript_id "Ledus.S5G026600.t1"; gene_id "Ledus.S5G026600"
Ledus.S5	AUGUSTUS	stop_codon	3362954	3362956	.	-	0	transcript_id "Ledus.S5G026600.t1"; gene_id "Ledus.S5G026600"
Ledus.S5	AUGUSTUS	CDS	3362957	3363193	0.97	-	0	transcript_id "Ledus.S5G026600.t1"; gene_id "Ledus.S5G026600"
Ledus.S5	AUGUSTUS	exon	3362957	3363193	.	-	.	transcript_id "Ledus.S5G026600.t1"; gene_id "Ledus.S5G026600"
Ledus.S5	AUGUSTUS	start_codon	3363191	3363193	.	-	0	transcript_id "Ledus.S5G026600.t1"; gene_id "Ledus.S5G026600"
# This transcript jg3117.t2 is derived from g552.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3118.t1 is derived from g553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6135967	6139105	.	+	.	Ledus.S1G053900
Ledus.S1	AUGUSTUS	transcript	6135967	6139105	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	start_codon	6135967	6135969	.	+	0	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	CDS	6135967	6136573	0.52	+	0	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	exon	6135967	6136573	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	intron	6136574	6136675	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	CDS	6136676	6136773	1	+	2	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	exon	6136676	6136773	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	intron	6136774	6136845	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	CDS	6136846	6136935	1	+	0	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	exon	6136846	6136935	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	intron	6136936	6137031	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	CDS	6137032	6137119	0.96	+	0	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	exon	6137032	6137119	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	intron	6137120	6137243	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	CDS	6137244	6137335	0.95	+	2	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	exon	6137244	6137335	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	intron	6137336	6137456	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	CDS	6137457	6137561	0.73	+	0	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	exon	6137457	6137561	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	intron	6137562	6137668	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	CDS	6137669	6137778	0.74	+	0	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	exon	6137669	6137778	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	intron	6137779	6137852	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	CDS	6137853	6137940	1	+	1	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	exon	6137853	6137940	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	intron	6137941	6138088	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	CDS	6138089	6138124	0.98	+	0	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	exon	6138089	6138124	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	intron	6138125	6138240	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	CDS	6138241	6138314	0.85	+	0	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	exon	6138241	6138314	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	intron	6138315	6138867	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	CDS	6138868	6139105	0.16	+	1	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	exon	6138868	6139105	.	+	.	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
Ledus.S1	AUGUSTUS	stop_codon	6139106	6139108	.	+	0	transcript_id "Ledus.S1G053900.t1"; gene_id "Ledus.S1G053900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9746.t1 is derived from g10776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9562824	9564488	.	+	.	Ledus.S3G122300
Ledus.S3	AUGUSTUS	transcript	9562824	9564488	.	+	.	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	start_codon	9562824	9562826	.	+	0	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	CDS	9562824	9563578	0.68	+	0	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	exon	9562824	9563578	.	+	.	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	intron	9563579	9563700	.	+	.	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	CDS	9563701	9563791	0.94	+	1	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	exon	9563701	9563791	.	+	.	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	intron	9563792	9563909	.	+	.	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	CDS	9563910	9564036	1	+	0	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	exon	9563910	9564036	.	+	.	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	intron	9564037	9564126	.	+	.	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	CDS	9564127	9564488	0.73	+	2	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	exon	9564127	9564488	.	+	.	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
Ledus.S3	AUGUSTUS	stop_codon	9564489	9564491	.	+	0	transcript_id "Ledus.S3G122300.t1"; gene_id "Ledus.S3G122300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7037.t1 is derived from g6568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	952428	954199	.	-	.	Ledus.C7G009800
Ledus.C7	AUGUSTUS	transcript	952428	954199	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	stop_codon	952425	952427	.	-	0	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	CDS	952428	952489	0.67	-	2	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	exon	952428	952489	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	intron	952490	952576	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	CDS	952577	952645	1	-	2	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	exon	952577	952645	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	intron	952646	952718	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	CDS	952719	952779	1	-	0	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	exon	952719	952779	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	intron	952780	952851	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	CDS	952852	952944	1	-	0	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	exon	952852	952944	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	intron	952945	953004	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	CDS	953005	953248	0.6	-	1	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	exon	953005	953248	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	intron	953249	953503	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	CDS	953504	953635	0.71	-	1	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	exon	953504	953635	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	intron	953636	953717	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	CDS	953718	953847	0.82	-	2	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	exon	953718	953847	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	intron	953848	953950	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	CDS	953951	954016	0.99	-	2	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	exon	953951	954016	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	intron	954017	954105	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	CDS	954106	954199	1	-	0	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	exon	954106	954199	.	-	.	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
Ledus.C7	AUGUSTUS	start_codon	954197	954199	.	-	0	transcript_id "Ledus.C7G009800.t1"; gene_id "Ledus.C7G009800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7006.t1 is derived from g6537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	766842	769651	.	-	.	Ledus.C7G006700
Ledus.C7	AUGUSTUS	transcript	766842	769651	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	stop_codon	766839	766841	.	-	0	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	CDS	766842	767090	0.99	-	0	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	exon	766842	767090	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	intron	767091	767222	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	CDS	767223	767317	1	-	2	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	exon	767223	767317	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	intron	767318	767505	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	CDS	767506	767620	1	-	0	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	exon	767506	767620	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	intron	767621	767863	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	CDS	767864	768082	1	-	0	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	exon	767864	768082	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	intron	768083	768318	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	CDS	768319	768355	1	-	1	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	exon	768319	768355	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	intron	768356	768483	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	CDS	768484	768584	1	-	0	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	exon	768484	768584	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	intron	768585	768714	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	CDS	768715	768810	1	-	0	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	exon	768715	768810	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	intron	768811	768941	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	CDS	768942	769067	1	-	0	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	exon	768942	769067	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	intron	769068	769152	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	CDS	769153	769307	1	-	2	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	exon	769153	769307	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	intron	769308	769389	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	CDS	769390	769535	1	-	1	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	exon	769390	769535	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	intron	769536	769631	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	CDS	769632	769651	0.99	-	0	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	exon	769632	769651	.	-	.	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
Ledus.C7	AUGUSTUS	start_codon	769649	769651	.	-	0	transcript_id "Ledus.C7G006700.t1"; gene_id "Ledus.C7G006700"
# This transcript jg11359.t2 is derived from g4977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11360.t1 is derived from g4978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3814612	3815118	.	-	.	Ledus.S4G051600
Ledus.S4	AUGUSTUS	transcript	3814612	3815118	.	-	.	transcript_id "Ledus.S4G051600.t1"; gene_id "Ledus.S4G051600"
Ledus.S4	AUGUSTUS	stop_codon	3814609	3814611	.	-	0	transcript_id "Ledus.S4G051600.t1"; gene_id "Ledus.S4G051600"
Ledus.S4	AUGUSTUS	CDS	3814612	3815118	0.63	-	0	transcript_id "Ledus.S4G051600.t1"; gene_id "Ledus.S4G051600"
Ledus.S4	AUGUSTUS	exon	3814612	3815118	.	-	.	transcript_id "Ledus.S4G051600.t1"; gene_id "Ledus.S4G051600"
Ledus.S4	AUGUSTUS	start_codon	3815116	3815118	.	-	0	transcript_id "Ledus.S4G051600.t1"; gene_id "Ledus.S4G051600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11795.t1 is derived from g5414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6819601	6821896	.	+	.	Ledus.S4G095100
Ledus.S4	AUGUSTUS	transcript	6819601	6821896	.	+	.	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	start_codon	6819601	6819603	.	+	0	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	CDS	6819601	6820878	0.59	+	0	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	exon	6819601	6820878	.	+	.	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	intron	6820879	6820960	.	+	.	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	CDS	6820961	6821366	0.99	+	0	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	exon	6820961	6821366	.	+	.	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	intron	6821367	6821467	.	+	.	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	CDS	6821468	6821569	1	+	2	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	exon	6821468	6821569	.	+	.	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	intron	6821570	6821654	.	+	.	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	CDS	6821655	6821896	0.92	+	2	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	exon	6821655	6821896	.	+	.	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
Ledus.S4	AUGUSTUS	stop_codon	6821897	6821899	.	+	0	transcript_id "Ledus.S4G095100.t1"; gene_id "Ledus.S4G095100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10698.t1 is derived from g11728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17211026	17211250	.	+	.	Ledus.S3G217500
Ledus.S3	AUGUSTUS	transcript	17211026	17211250	.	+	.	transcript_id "Ledus.S3G217500.t1"; gene_id "Ledus.S3G217500"
Ledus.S3	AUGUSTUS	start_codon	17211026	17211028	.	+	0	transcript_id "Ledus.S3G217500.t1"; gene_id "Ledus.S3G217500"
Ledus.S3	AUGUSTUS	CDS	17211026	17211250	0.98	+	0	transcript_id "Ledus.S3G217500.t1"; gene_id "Ledus.S3G217500"
Ledus.S3	AUGUSTUS	exon	17211026	17211250	.	+	.	transcript_id "Ledus.S3G217500.t1"; gene_id "Ledus.S3G217500"
Ledus.S3	AUGUSTUS	stop_codon	17211251	17211253	.	+	0	transcript_id "Ledus.S3G217500.t1"; gene_id "Ledus.S3G217500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg498.t1 is derived from g7359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2926771	2927013	.	+	.	Ledus.S2G038000
Ledus.S2	AUGUSTUS	transcript	2926771	2927013	.	+	.	transcript_id "Ledus.S2G038000.t1"; gene_id "Ledus.S2G038000"
Ledus.S2	AUGUSTUS	start_codon	2926771	2926773	.	+	0	transcript_id "Ledus.S2G038000.t1"; gene_id "Ledus.S2G038000"
Ledus.S2	AUGUSTUS	CDS	2926771	2927013	0.28	+	0	transcript_id "Ledus.S2G038000.t1"; gene_id "Ledus.S2G038000"
Ledus.S2	AUGUSTUS	exon	2926771	2927013	.	+	.	transcript_id "Ledus.S2G038000.t1"; gene_id "Ledus.S2G038000"
Ledus.S2	AUGUSTUS	stop_codon	2927014	2927016	.	+	0	transcript_id "Ledus.S2G038000.t1"; gene_id "Ledus.S2G038000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10263.t1 is derived from g11293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13893796	13894751	.	+	.	Ledus.S3G174000
Ledus.S3	AUGUSTUS	transcript	13893796	13894751	.	+	.	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	start_codon	13893796	13893798	.	+	0	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	CDS	13893796	13893885	0.83	+	0	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	exon	13893796	13893885	.	+	.	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	intron	13893886	13893969	.	+	.	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	CDS	13893970	13894125	0.97	+	0	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	exon	13893970	13894125	.	+	.	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	intron	13894126	13894200	.	+	.	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	CDS	13894201	13894255	1	+	0	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	exon	13894201	13894255	.	+	.	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	intron	13894256	13894350	.	+	.	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	CDS	13894351	13894514	1	+	2	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	exon	13894351	13894514	.	+	.	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	intron	13894515	13894604	.	+	.	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	CDS	13894605	13894751	0.81	+	0	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	exon	13894605	13894751	.	+	.	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
Ledus.S3	AUGUSTUS	stop_codon	13894752	13894754	.	+	0	transcript_id "Ledus.S3G174000.t1"; gene_id "Ledus.S3G174000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5354.t1 is derived from g2793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23591961	23594332	.	-	.	Ledus.S1G277500
Ledus.S1	AUGUSTUS	transcript	23591961	23594332	.	-	.	transcript_id "Ledus.S1G277500.t1"; gene_id "Ledus.S1G277500"
Ledus.S1	AUGUSTUS	stop_codon	23591958	23591960	.	-	0	transcript_id "Ledus.S1G277500.t1"; gene_id "Ledus.S1G277500"
Ledus.S1	AUGUSTUS	CDS	23591961	23594034	0.86	-	1	transcript_id "Ledus.S1G277500.t1"; gene_id "Ledus.S1G277500"
Ledus.S1	AUGUSTUS	exon	23591961	23594034	.	-	.	transcript_id "Ledus.S1G277500.t1"; gene_id "Ledus.S1G277500"
Ledus.S1	AUGUSTUS	intron	23594035	23594111	.	-	.	transcript_id "Ledus.S1G277500.t1"; gene_id "Ledus.S1G277500"
Ledus.S1	AUGUSTUS	CDS	23594112	23594332	0.84	-	0	transcript_id "Ledus.S1G277500.t1"; gene_id "Ledus.S1G277500"
Ledus.S1	AUGUSTUS	exon	23594112	23594332	.	-	.	transcript_id "Ledus.S1G277500.t1"; gene_id "Ledus.S1G277500"
Ledus.S1	AUGUSTUS	start_codon	23594330	23594332	.	-	0	transcript_id "Ledus.S1G277500.t1"; gene_id "Ledus.S1G277500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3969.t1 is derived from g1405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13812463	13815450	.	-	.	Ledus.S1G139000
Ledus.S1	AUGUSTUS	transcript	13812463	13815450	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	stop_codon	13812460	13812462	.	-	0	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	CDS	13812463	13812789	1	-	0	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	exon	13812463	13812789	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	intron	13812790	13812914	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	CDS	13812915	13813031	1	-	0	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	exon	13812915	13813031	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	intron	13813032	13813127	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	CDS	13813128	13813215	1	-	1	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	exon	13813128	13813215	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	intron	13813216	13813365	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	CDS	13813366	13813440	1	-	1	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	exon	13813366	13813440	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	intron	13813441	13813545	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	CDS	13813546	13813613	1	-	0	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	exon	13813546	13813613	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	intron	13813614	13813785	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	CDS	13813786	13813868	1	-	2	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	exon	13813786	13813868	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	intron	13813869	13814070	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	CDS	13814071	13814119	1	-	0	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	exon	13814071	13814119	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	intron	13814120	13814314	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	CDS	13814315	13814435	0.97	-	1	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	exon	13814315	13814435	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	intron	13814436	13814558	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	CDS	13814559	13814644	0.99	-	0	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	exon	13814559	13814644	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	intron	13814645	13814755	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	CDS	13814756	13814884	1	-	0	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	exon	13814756	13814884	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	intron	13814885	13814967	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	CDS	13814968	13815090	1	-	0	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	exon	13814968	13815090	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	intron	13815091	13815240	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	CDS	13815241	13815450	0.99	-	0	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	exon	13815241	13815450	.	-	.	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
Ledus.S1	AUGUSTUS	start_codon	13815448	13815450	.	-	0	transcript_id "Ledus.S1G139000.t1"; gene_id "Ledus.S1G139000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg198.t1 is derived from g7059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	771426	777295	.	-	.	Ledus.S2G008000
Ledus.S2	AUGUSTUS	transcript	771426	777295	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	stop_codon	771423	771425	.	-	0	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	771426	771665	0.72	-	0	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	771426	771665	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	771666	771769	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	771770	772185	0.91	-	2	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	771770	772185	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	772186	772291	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	772292	772412	0.99	-	0	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	772292	772412	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	772413	772500	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	772501	772669	1	-	1	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	772501	772669	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	772670	772762	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	772763	772833	1	-	0	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	772763	772833	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	772834	773011	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	773012	773240	1	-	1	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	773012	773240	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	773241	773331	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	773332	773646	1	-	1	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	773332	773646	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	773647	773777	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	773778	774282	0.99	-	2	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	773778	774282	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	774283	774392	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	774393	774510	0.97	-	0	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	774393	774510	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	774511	774633	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	774634	774685	1	-	1	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	774634	774685	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	774686	774909	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	774910	774992	1	-	0	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	774910	774992	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	774993	775176	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	775177	775227	1	-	0	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	775177	775227	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	775228	775356	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	775357	775496	1	-	2	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	775357	775496	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	775497	775758	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	775759	775895	1	-	1	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	775759	775895	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	775896	776017	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	776018	776099	0.9	-	2	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	776018	776099	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	776100	776200	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	776201	776359	0.98	-	2	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	776201	776359	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	776360	776545	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	776546	776676	1	-	1	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	776546	776676	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	776677	776785	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	776786	776822	1	-	2	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	776786	776822	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	776823	776928	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	776929	776989	1	-	0	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	776929	776989	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	776990	777107	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	777108	777215	1	-	0	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	777108	777215	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	intron	777216	777292	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	CDS	777293	777295	0.98	-	0	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	exon	777293	777295	.	-	.	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
Ledus.S2	AUGUSTUS	start_codon	777293	777295	.	-	0	transcript_id "Ledus.S2G008000.t1"; gene_id "Ledus.S2G008000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10458.t1 is derived from g11488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15295293	15295592	.	+	.	Ledus.S3G193500
Ledus.S3	AUGUSTUS	transcript	15295293	15295592	.	+	.	transcript_id "Ledus.S3G193500.t1"; gene_id "Ledus.S3G193500"
Ledus.S3	AUGUSTUS	start_codon	15295293	15295295	.	+	0	transcript_id "Ledus.S3G193500.t1"; gene_id "Ledus.S3G193500"
Ledus.S3	AUGUSTUS	CDS	15295293	15295592	0.77	+	0	transcript_id "Ledus.S3G193500.t1"; gene_id "Ledus.S3G193500"
Ledus.S3	AUGUSTUS	exon	15295293	15295592	.	+	.	transcript_id "Ledus.S3G193500.t1"; gene_id "Ledus.S3G193500"
Ledus.S3	AUGUSTUS	stop_codon	15295593	15295595	.	+	0	transcript_id "Ledus.S3G193500.t1"; gene_id "Ledus.S3G193500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12645.t1 is derived from g6267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13593135	13593913	.	-	.	Ledus.S4G180100
Ledus.S4	AUGUSTUS	transcript	13593135	13593913	.	-	.	transcript_id "Ledus.S4G180100.t1"; gene_id "Ledus.S4G180100"
Ledus.S4	AUGUSTUS	stop_codon	13593132	13593134	.	-	0	transcript_id "Ledus.S4G180100.t1"; gene_id "Ledus.S4G180100"
Ledus.S4	AUGUSTUS	CDS	13593135	13593239	1	-	0	transcript_id "Ledus.S4G180100.t1"; gene_id "Ledus.S4G180100"
Ledus.S4	AUGUSTUS	exon	13593135	13593239	.	-	.	transcript_id "Ledus.S4G180100.t1"; gene_id "Ledus.S4G180100"
Ledus.S4	AUGUSTUS	intron	13593240	13593323	.	-	.	transcript_id "Ledus.S4G180100.t1"; gene_id "Ledus.S4G180100"
Ledus.S4	AUGUSTUS	CDS	13593324	13593481	1	-	2	transcript_id "Ledus.S4G180100.t1"; gene_id "Ledus.S4G180100"
Ledus.S4	AUGUSTUS	exon	13593324	13593481	.	-	.	transcript_id "Ledus.S4G180100.t1"; gene_id "Ledus.S4G180100"
Ledus.S4	AUGUSTUS	intron	13593482	13593735	.	-	.	transcript_id "Ledus.S4G180100.t1"; gene_id "Ledus.S4G180100"
Ledus.S4	AUGUSTUS	CDS	13593736	13593913	0.98	-	0	transcript_id "Ledus.S4G180100.t1"; gene_id "Ledus.S4G180100"
Ledus.S4	AUGUSTUS	exon	13593736	13593913	.	-	.	transcript_id "Ledus.S4G180100.t1"; gene_id "Ledus.S4G180100"
Ledus.S4	AUGUSTUS	start_codon	13593911	13593913	.	-	0	transcript_id "Ledus.S4G180100.t1"; gene_id "Ledus.S4G180100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5520.t1 is derived from g2959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24839619	24840479	.	+	.	Ledus.S1G294100
Ledus.S1	AUGUSTUS	transcript	24839619	24840479	.	+	.	transcript_id "Ledus.S1G294100.t1"; gene_id "Ledus.S1G294100"
Ledus.S1	AUGUSTUS	start_codon	24839619	24839621	.	+	0	transcript_id "Ledus.S1G294100.t1"; gene_id "Ledus.S1G294100"
Ledus.S1	AUGUSTUS	CDS	24839619	24840479	0.74	+	0	transcript_id "Ledus.S1G294100.t1"; gene_id "Ledus.S1G294100"
Ledus.S1	AUGUSTUS	exon	24839619	24840479	.	+	.	transcript_id "Ledus.S1G294100.t1"; gene_id "Ledus.S1G294100"
Ledus.S1	AUGUSTUS	stop_codon	24840480	24840482	.	+	0	transcript_id "Ledus.S1G294100.t1"; gene_id "Ledus.S1G294100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg876.t1 is derived from g7737.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5935154	5936287	.	+	.	Ledus.S2G075800
Ledus.S2	AUGUSTUS	transcript	5935154	5936287	.	+	.	transcript_id "Ledus.S2G075800.t1"; gene_id "Ledus.S2G075800"
Ledus.S2	AUGUSTUS	start_codon	5935154	5935156	.	+	0	transcript_id "Ledus.S2G075800.t1"; gene_id "Ledus.S2G075800"
Ledus.S2	AUGUSTUS	CDS	5935154	5935385	1	+	0	transcript_id "Ledus.S2G075800.t1"; gene_id "Ledus.S2G075800"
Ledus.S2	AUGUSTUS	exon	5935154	5935385	.	+	.	transcript_id "Ledus.S2G075800.t1"; gene_id "Ledus.S2G075800"
Ledus.S2	AUGUSTUS	intron	5935386	5936165	.	+	.	transcript_id "Ledus.S2G075800.t1"; gene_id "Ledus.S2G075800"
Ledus.S2	AUGUSTUS	CDS	5936166	5936287	1	+	2	transcript_id "Ledus.S2G075800.t1"; gene_id "Ledus.S2G075800"
Ledus.S2	AUGUSTUS	exon	5936166	5936287	.	+	.	transcript_id "Ledus.S2G075800.t1"; gene_id "Ledus.S2G075800"
Ledus.S2	AUGUSTUS	stop_codon	5936288	5936290	.	+	0	transcript_id "Ledus.S2G075800.t1"; gene_id "Ledus.S2G075800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1924.t1 is derived from g8787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13448891	13449817	.	-	.	Ledus.S2G180600
Ledus.S2	AUGUSTUS	transcript	13448891	13449817	.	-	.	transcript_id "Ledus.S2G180600.t1"; gene_id "Ledus.S2G180600"
Ledus.S2	AUGUSTUS	stop_codon	13448888	13448890	.	-	0	transcript_id "Ledus.S2G180600.t1"; gene_id "Ledus.S2G180600"
Ledus.S2	AUGUSTUS	CDS	13448891	13449817	0.85	-	0	transcript_id "Ledus.S2G180600.t1"; gene_id "Ledus.S2G180600"
Ledus.S2	AUGUSTUS	exon	13448891	13449817	.	-	.	transcript_id "Ledus.S2G180600.t1"; gene_id "Ledus.S2G180600"
Ledus.S2	AUGUSTUS	start_codon	13449815	13449817	.	-	0	transcript_id "Ledus.S2G180600.t1"; gene_id "Ledus.S2G180600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7436.t1 is derived from g12107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2676773	2677286	.	-	.	Ledus.S5G021400
Ledus.S5	AUGUSTUS	transcript	2676773	2677286	.	-	.	transcript_id "Ledus.S5G021400.t1"; gene_id "Ledus.S5G021400"
Ledus.S5	AUGUSTUS	stop_codon	2676770	2676772	.	-	0	transcript_id "Ledus.S5G021400.t1"; gene_id "Ledus.S5G021400"
Ledus.S5	AUGUSTUS	CDS	2676773	2676961	0.9	-	0	transcript_id "Ledus.S5G021400.t1"; gene_id "Ledus.S5G021400"
Ledus.S5	AUGUSTUS	exon	2676773	2676961	.	-	.	transcript_id "Ledus.S5G021400.t1"; gene_id "Ledus.S5G021400"
Ledus.S5	AUGUSTUS	intron	2676962	2677050	.	-	.	transcript_id "Ledus.S5G021400.t1"; gene_id "Ledus.S5G021400"
Ledus.S5	AUGUSTUS	CDS	2677051	2677132	1	-	1	transcript_id "Ledus.S5G021400.t1"; gene_id "Ledus.S5G021400"
Ledus.S5	AUGUSTUS	exon	2677051	2677132	.	-	.	transcript_id "Ledus.S5G021400.t1"; gene_id "Ledus.S5G021400"
Ledus.S5	AUGUSTUS	intron	2677133	2677206	.	-	.	transcript_id "Ledus.S5G021400.t1"; gene_id "Ledus.S5G021400"
Ledus.S5	AUGUSTUS	CDS	2677207	2677286	0.96	-	0	transcript_id "Ledus.S5G021400.t1"; gene_id "Ledus.S5G021400"
Ledus.S5	AUGUSTUS	exon	2677207	2677286	.	-	.	transcript_id "Ledus.S5G021400.t1"; gene_id "Ledus.S5G021400"
Ledus.S5	AUGUSTUS	start_codon	2677284	2677286	.	-	0	transcript_id "Ledus.S5G021400.t1"; gene_id "Ledus.S5G021400"
# This transcript jg12582.t1 is derived from g6204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12971861	12972082	.	+	.	Ledus.S4G173800
Ledus.S4	AUGUSTUS	transcript	12971861	12972082	.	+	.	transcript_id "Ledus.S4G173800.t1"; gene_id "Ledus.S4G173800"
Ledus.S4	AUGUSTUS	start_codon	12971861	12971863	.	+	0	transcript_id "Ledus.S4G173800.t1"; gene_id "Ledus.S4G173800"
Ledus.S4	AUGUSTUS	CDS	12971861	12972082	0.94	+	0	transcript_id "Ledus.S4G173800.t1"; gene_id "Ledus.S4G173800"
Ledus.S4	AUGUSTUS	exon	12971861	12972082	.	+	.	transcript_id "Ledus.S4G173800.t1"; gene_id "Ledus.S4G173800"
Ledus.S4	AUGUSTUS	stop_codon	12972083	12972085	.	+	0	transcript_id "Ledus.S4G173800.t1"; gene_id "Ledus.S4G173800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11473.t1 is derived from g5091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4623096	4624810	.	-	.	Ledus.S4G062900
Ledus.S4	AUGUSTUS	transcript	4623096	4624810	.	-	.	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	stop_codon	4623093	4623095	.	-	0	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	CDS	4623096	4623206	0.83	-	0	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	exon	4623096	4623206	.	-	.	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	intron	4623207	4623523	.	-	.	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	CDS	4623524	4623694	1	-	0	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	exon	4623524	4623694	.	-	.	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	intron	4623695	4623779	.	-	.	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	CDS	4623780	4624079	1	-	0	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	exon	4623780	4624079	.	-	.	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	intron	4624080	4624164	.	-	.	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	CDS	4624165	4624548	0.99	-	0	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	exon	4624165	4624548	.	-	.	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	intron	4624549	4624723	.	-	.	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	CDS	4624724	4624810	0.83	-	0	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	exon	4624724	4624810	.	-	.	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
Ledus.S4	AUGUSTUS	start_codon	4624808	4624810	.	-	0	transcript_id "Ledus.S4G062900.t1"; gene_id "Ledus.S4G062900"
# This transcript jg12408.t2 is derived from g6029.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12409.t1 is derived from g6030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11796790	11798001	.	+	.	Ledus.S4G156500
Ledus.S4	AUGUSTUS	transcript	11796790	11798001	.	+	.	transcript_id "Ledus.S4G156500.t1"; gene_id "Ledus.S4G156500"
Ledus.S4	AUGUSTUS	start_codon	11796790	11796792	.	+	0	transcript_id "Ledus.S4G156500.t1"; gene_id "Ledus.S4G156500"
Ledus.S4	AUGUSTUS	CDS	11796790	11798001	0.98	+	0	transcript_id "Ledus.S4G156500.t1"; gene_id "Ledus.S4G156500"
Ledus.S4	AUGUSTUS	exon	11796790	11798001	.	+	.	transcript_id "Ledus.S4G156500.t1"; gene_id "Ledus.S4G156500"
Ledus.S4	AUGUSTUS	stop_codon	11798002	11798004	.	+	0	transcript_id "Ledus.S4G156500.t1"; gene_id "Ledus.S4G156500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11319.t1 is derived from g4937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3573193	3575757	.	-	.	Ledus.S4G047500
Ledus.S4	AUGUSTUS	transcript	3573193	3575757	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	stop_codon	3573190	3573192	.	-	0	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3573193	3573258	1	-	0	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3573193	3573258	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3573259	3573356	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3573357	3573419	0.99	-	0	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3573357	3573419	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3573420	3573524	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3573525	3573646	0.97	-	2	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3573525	3573646	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3573647	3573838	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3573839	3573980	1	-	0	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3573839	3573980	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3573981	3574061	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3574062	3574166	1	-	0	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3574062	3574166	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3574167	3574278	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3574279	3574383	0.93	-	0	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3574279	3574383	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3574384	3574533	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3574534	3574665	1	-	0	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3574534	3574665	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3574666	3574781	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3574782	3574897	1	-	2	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3574782	3574897	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3574898	3575110	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3575111	3575233	1	-	2	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3575111	3575233	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3575234	3575480	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3575481	3575532	0.83	-	0	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3575481	3575532	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3575533	3575664	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3575665	3575757	0.78	-	0	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3575665	3575757	.	-	.	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	start_codon	3575755	3575757	.	-	0	transcript_id "Ledus.S4G047500.t1"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	transcript	3573193	3575757	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	stop_codon	3573190	3573192	.	-	0	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3573193	3573258	1	-	0	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3573193	3573258	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3573259	3573356	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3573357	3573419	1	-	0	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3573357	3573419	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3573420	3573524	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3573525	3573646	0.98	-	2	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3573525	3573646	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3573647	3573838	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3573839	3573980	1	-	0	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3573839	3573980	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3573981	3574061	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3574062	3574166	1	-	0	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3574062	3574166	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3574167	3574278	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3574279	3574383	0.95	-	0	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3574279	3574383	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3574384	3574533	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3574534	3574665	1	-	0	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3574534	3574665	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3574666	3574781	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3574782	3574897	1	-	2	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3574782	3574897	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3574898	3575110	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3575111	3575181	0.77	-	1	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3575111	3575181	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3575182	3575277	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3575278	3575392	0.61	-	2	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3575278	3575392	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3575393	3575480	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3575481	3575532	0.85	-	0	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3575481	3575532	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3575533	3575664	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3575665	3575757	0.81	-	0	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3575665	3575757	.	-	.	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	start_codon	3575755	3575757	.	-	0	transcript_id "Ledus.S4G047500.t2"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	transcript	3573193	3575757	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	stop_codon	3573190	3573192	.	-	0	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3573193	3573258	1	-	0	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3573193	3573258	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3573259	3573356	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3573357	3573419	1	-	0	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3573357	3573419	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3573420	3573524	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3573525	3573646	0.97	-	2	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3573525	3573646	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3573647	3573838	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3573839	3573980	1	-	0	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3573839	3573980	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3573981	3574061	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3574062	3574166	1	-	0	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3574062	3574166	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3574167	3574278	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3574279	3574383	0.97	-	0	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3574279	3574383	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3574384	3574533	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3574534	3574665	1	-	0	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3574534	3574665	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3574666	3574781	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3574782	3574897	1	-	2	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3574782	3574897	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3574898	3575110	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3575111	3575181	0.84	-	1	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3575111	3575181	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3575182	3575277	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3575278	3575386	0.59	-	2	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3575278	3575386	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3575387	3575480	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3575481	3575532	0.84	-	0	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3575481	3575532	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	intron	3575533	3575664	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	CDS	3575665	3575757	0.76	-	0	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	exon	3575665	3575757	.	-	.	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
Ledus.S4	AUGUSTUS	start_codon	3575755	3575757	.	-	0	transcript_id "Ledus.S4G047500.t3"; gene_id "Ledus.S4G047500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5523.t1 is derived from g2962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24884360	24886711	.	+	.	Ledus.S1G294400
Ledus.S1	AUGUSTUS	transcript	24884360	24886711	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	start_codon	24884360	24884362	.	+	0	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	CDS	24884360	24884602	0.75	+	0	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	exon	24884360	24884602	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	intron	24884603	24884688	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	CDS	24884689	24884767	1	+	0	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	exon	24884689	24884767	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	intron	24884768	24884850	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	CDS	24884851	24885004	1	+	2	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	exon	24884851	24885004	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	intron	24885005	24885137	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	CDS	24885138	24885207	1	+	1	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	exon	24885138	24885207	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	intron	24885208	24885403	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	CDS	24885404	24885468	1	+	0	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	exon	24885404	24885468	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	intron	24885469	24885580	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	CDS	24885581	24885659	1	+	1	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	exon	24885581	24885659	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	intron	24885660	24885787	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	CDS	24885788	24885875	1	+	0	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	exon	24885788	24885875	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	intron	24885876	24885974	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	CDS	24885975	24886039	1	+	2	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	exon	24885975	24886039	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	intron	24886040	24886160	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	CDS	24886161	24886250	1	+	0	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	exon	24886161	24886250	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	intron	24886251	24886441	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	CDS	24886442	24886711	1	+	0	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	exon	24886442	24886711	.	+	.	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
Ledus.S1	AUGUSTUS	stop_codon	24886712	24886714	.	+	0	transcript_id "Ledus.S1G294400.t1"; gene_id "Ledus.S1G294400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7012.t1 is derived from g6543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	806953	807405	.	-	.	Ledus.C7G007300
Ledus.C7	AUGUSTUS	transcript	806953	807405	.	-	.	transcript_id "Ledus.C7G007300.t1"; gene_id "Ledus.C7G007300"
Ledus.C7	AUGUSTUS	stop_codon	806950	806952	.	-	0	transcript_id "Ledus.C7G007300.t1"; gene_id "Ledus.C7G007300"
Ledus.C7	AUGUSTUS	CDS	806953	807405	0.77	-	0	transcript_id "Ledus.C7G007300.t1"; gene_id "Ledus.C7G007300"
Ledus.C7	AUGUSTUS	exon	806953	807405	.	-	.	transcript_id "Ledus.C7G007300.t1"; gene_id "Ledus.C7G007300"
Ledus.C7	AUGUSTUS	start_codon	807403	807405	.	-	0	transcript_id "Ledus.C7G007300.t1"; gene_id "Ledus.C7G007300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg314.t1 is derived from g7175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1588820	1590196	.	-	.	Ledus.S2G019600
Ledus.S2	AUGUSTUS	transcript	1588820	1590196	.	-	.	transcript_id "Ledus.S2G019600.t1"; gene_id "Ledus.S2G019600"
Ledus.S2	AUGUSTUS	stop_codon	1588817	1588819	.	-	0	transcript_id "Ledus.S2G019600.t1"; gene_id "Ledus.S2G019600"
Ledus.S2	AUGUSTUS	CDS	1588820	1590196	1	-	0	transcript_id "Ledus.S2G019600.t1"; gene_id "Ledus.S2G019600"
Ledus.S2	AUGUSTUS	exon	1588820	1590196	.	-	.	transcript_id "Ledus.S2G019600.t1"; gene_id "Ledus.S2G019600"
Ledus.S2	AUGUSTUS	start_codon	1590194	1590196	.	-	0	transcript_id "Ledus.S2G019600.t1"; gene_id "Ledus.S2G019600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12557.t1 is derived from g6179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12862610	12867612	.	+	.	Ledus.S4G171300
Ledus.S4	AUGUSTUS	transcript	12862610	12867612	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	start_codon	12862610	12862612	.	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12862610	12862635	0.78	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12862610	12862635	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12862636	12862769	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12862770	12863013	1	+	1	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12862770	12863013	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12863014	12863234	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12863235	12863462	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12863235	12863462	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12863463	12863597	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12863598	12863651	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12863598	12863651	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12863652	12863765	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12863766	12863839	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12863766	12863839	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12863840	12863992	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12863993	12864056	1	+	1	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12863993	12864056	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12864057	12864468	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12864469	12864513	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12864469	12864513	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12864514	12864664	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12864665	12864772	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12864665	12864772	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12864773	12864879	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12864880	12864957	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12864880	12864957	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12864958	12865072	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12865073	12865139	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12865073	12865139	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12865140	12865312	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12865313	12865371	1	+	2	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12865313	12865371	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12865372	12865458	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12865459	12865558	0.87	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12865459	12865558	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12865559	12865670	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12865671	12865750	0.99	+	2	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12865671	12865750	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12865751	12865843	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12865844	12865900	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12865844	12865900	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12865901	12866037	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12866038	12866141	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12866038	12866141	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12866142	12866290	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12866291	12866378	1	+	1	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12866291	12866378	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12866379	12866522	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12866523	12866608	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12866523	12866608	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12866609	12866712	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12866713	12866746	1	+	1	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12866713	12866746	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12866747	12866882	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12866883	12866954	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12866883	12866954	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12866955	12867051	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12867052	12867102	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12867052	12867102	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12867103	12867185	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12867186	12867246	1	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12867186	12867246	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	intron	12867247	12867388	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	CDS	12867389	12867612	1	+	2	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	exon	12867389	12867612	.	+	.	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
Ledus.S4	AUGUSTUS	stop_codon	12867613	12867615	.	+	0	transcript_id "Ledus.S4G171300.t1"; gene_id "Ledus.S4G171300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10631.t1 is derived from g11661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16623107	16624150	.	-	.	Ledus.S3G210800
Ledus.S3	AUGUSTUS	transcript	16623107	16624150	.	-	.	transcript_id "Ledus.S3G210800.t1"; gene_id "Ledus.S3G210800"
Ledus.S3	AUGUSTUS	stop_codon	16623104	16623106	.	-	0	transcript_id "Ledus.S3G210800.t1"; gene_id "Ledus.S3G210800"
Ledus.S3	AUGUSTUS	CDS	16623107	16623631	1	-	0	transcript_id "Ledus.S3G210800.t1"; gene_id "Ledus.S3G210800"
Ledus.S3	AUGUSTUS	exon	16623107	16623631	.	-	.	transcript_id "Ledus.S3G210800.t1"; gene_id "Ledus.S3G210800"
Ledus.S3	AUGUSTUS	intron	16623632	16623715	.	-	.	transcript_id "Ledus.S3G210800.t1"; gene_id "Ledus.S3G210800"
Ledus.S3	AUGUSTUS	CDS	16623716	16624150	1	-	0	transcript_id "Ledus.S3G210800.t1"; gene_id "Ledus.S3G210800"
Ledus.S3	AUGUSTUS	exon	16623716	16624150	.	-	.	transcript_id "Ledus.S3G210800.t1"; gene_id "Ledus.S3G210800"
Ledus.S3	AUGUSTUS	start_codon	16624148	16624150	.	-	0	transcript_id "Ledus.S3G210800.t1"; gene_id "Ledus.S3G210800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5554.t1 is derived from g2993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25085983	25089391	.	-	.	Ledus.S1G297500
Ledus.S1	AUGUSTUS	transcript	25085983	25089391	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	stop_codon	25085980	25085982	.	-	0	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25085983	25086072	0.98	-	0	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25085983	25086072	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25086073	25086164	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25086165	25086252	1	-	1	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25086165	25086252	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25086253	25086331	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25086332	25086420	1	-	0	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25086332	25086420	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25086421	25086505	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25086506	25086560	1	-	1	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25086506	25086560	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25086561	25086651	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25086652	25086762	1	-	1	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25086652	25086762	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25086763	25086843	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25086844	25086908	1	-	0	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25086844	25086908	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25086909	25087007	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25087008	25087053	1	-	1	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25087008	25087053	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25087054	25087156	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25087157	25087260	1	-	0	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25087157	25087260	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25087261	25087359	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25087360	25087474	1	-	1	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25087360	25087474	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25087475	25087550	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25087551	25087639	1	-	0	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25087551	25087639	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25087640	25087741	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25087742	25087953	1	-	2	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25087742	25087953	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25087954	25088042	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25088043	25088158	1	-	1	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25088043	25088158	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25088159	25088245	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25088246	25088346	1	-	0	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25088246	25088346	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25088347	25088433	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25088434	25088508	1	-	0	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25088434	25088508	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25088509	25088609	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25088610	25088772	1	-	1	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25088610	25088772	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	intron	25088773	25088855	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	CDS	25088856	25089391	0.92	-	0	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	exon	25088856	25089391	.	-	.	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
Ledus.S1	AUGUSTUS	start_codon	25089389	25089391	.	-	0	transcript_id "Ledus.S1G297500.t1"; gene_id "Ledus.S1G297500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8505.t1 is derived from g13177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12335265	12335610	.	-	.	Ledus.S5G128300
Ledus.S5	AUGUSTUS	transcript	12335265	12335610	.	-	.	transcript_id "Ledus.S5G128300.t1"; gene_id "Ledus.S5G128300"
Ledus.S5	AUGUSTUS	stop_codon	12335262	12335264	.	-	0	transcript_id "Ledus.S5G128300.t1"; gene_id "Ledus.S5G128300"
Ledus.S5	AUGUSTUS	CDS	12335265	12335381	0.62	-	0	transcript_id "Ledus.S5G128300.t1"; gene_id "Ledus.S5G128300"
Ledus.S5	AUGUSTUS	exon	12335265	12335381	.	-	.	transcript_id "Ledus.S5G128300.t1"; gene_id "Ledus.S5G128300"
Ledus.S5	AUGUSTUS	intron	12335382	12335460	.	-	.	transcript_id "Ledus.S5G128300.t1"; gene_id "Ledus.S5G128300"
Ledus.S5	AUGUSTUS	CDS	12335461	12335610	0.19	-	0	transcript_id "Ledus.S5G128300.t1"; gene_id "Ledus.S5G128300"
Ledus.S5	AUGUSTUS	exon	12335461	12335610	.	-	.	transcript_id "Ledus.S5G128300.t1"; gene_id "Ledus.S5G128300"
Ledus.S5	AUGUSTUS	start_codon	12335608	12335610	.	-	0	transcript_id "Ledus.S5G128300.t1"; gene_id "Ledus.S5G128300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3735.t1 is derived from g1171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11253978	11256455	.	-	.	Ledus.S1G115600
Ledus.S1	AUGUSTUS	transcript	11253978	11256455	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	stop_codon	11253975	11253977	.	-	0	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	CDS	11253978	11253980	0.97	-	0	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	exon	11253978	11253980	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	intron	11253981	11254071	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	CDS	11254072	11254130	0.97	-	2	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	exon	11254072	11254130	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	intron	11254131	11254248	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	CDS	11254249	11254340	0.98	-	1	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	exon	11254249	11254340	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	intron	11254341	11254421	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	CDS	11254422	11254531	1	-	0	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	exon	11254422	11254531	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	intron	11254532	11254676	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	CDS	11254677	11254754	1	-	0	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	exon	11254677	11254754	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	intron	11254755	11254880	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	CDS	11254881	11254946	1	-	0	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	exon	11254881	11254946	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	intron	11254947	11255078	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	CDS	11255079	11255135	1	-	0	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	exon	11255079	11255135	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	intron	11255136	11255413	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	CDS	11255414	11255463	1	-	2	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	exon	11255414	11255463	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	intron	11255464	11255599	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	CDS	11255600	11255770	1	-	2	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	exon	11255600	11255770	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	intron	11255771	11256142	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	CDS	11256143	11256455	0.85	-	0	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	exon	11256143	11256455	.	-	.	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
Ledus.S1	AUGUSTUS	start_codon	11256453	11256455	.	-	0	transcript_id "Ledus.S1G115600.t1"; gene_id "Ledus.S1G115600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7229.t1 is derived from g11900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	169116	172257	.	+	.	Ledus.S5G000700
Ledus.S5	AUGUSTUS	transcript	169116	172257	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	start_codon	169116	169118	.	+	0	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	CDS	169116	170246	0.44	+	0	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	exon	169116	170246	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	intron	170247	170437	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	CDS	170438	170665	1	+	0	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	exon	170438	170665	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	intron	170666	170766	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	CDS	170767	170874	0.74	+	0	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	exon	170767	170874	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	intron	170875	170969	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	CDS	170970	171152	1	+	0	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	exon	170970	171152	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	intron	171153	171329	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	CDS	171330	171575	0.8	+	0	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	exon	171330	171575	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	intron	171576	171693	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	CDS	171694	171945	1	+	0	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	exon	171694	171945	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	intron	171946	172029	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	CDS	172030	172257	0.93	+	0	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	exon	172030	172257	.	+	.	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
Ledus.S5	AUGUSTUS	stop_codon	172258	172260	.	+	0	transcript_id "Ledus.S5G000700.t1"; gene_id "Ledus.S5G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7857.t1 is derived from g12528.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7503882	7504495	.	-	.	Ledus.S5G063500
Ledus.S5	AUGUSTUS	transcript	7503882	7504495	.	-	.	transcript_id "Ledus.S5G063500.t1"; gene_id "Ledus.S5G063500"
Ledus.S5	AUGUSTUS	stop_codon	7503879	7503881	.	-	0	transcript_id "Ledus.S5G063500.t1"; gene_id "Ledus.S5G063500"
Ledus.S5	AUGUSTUS	CDS	7503882	7504134	0.42	-	1	transcript_id "Ledus.S5G063500.t1"; gene_id "Ledus.S5G063500"
Ledus.S5	AUGUSTUS	exon	7503882	7504134	.	-	.	transcript_id "Ledus.S5G063500.t1"; gene_id "Ledus.S5G063500"
Ledus.S5	AUGUSTUS	intron	7504135	7504358	.	-	.	transcript_id "Ledus.S5G063500.t1"; gene_id "Ledus.S5G063500"
Ledus.S5	AUGUSTUS	CDS	7504359	7504495	0.49	-	0	transcript_id "Ledus.S5G063500.t1"; gene_id "Ledus.S5G063500"
Ledus.S5	AUGUSTUS	exon	7504359	7504495	.	-	.	transcript_id "Ledus.S5G063500.t1"; gene_id "Ledus.S5G063500"
Ledus.S5	AUGUSTUS	start_codon	7504493	7504495	.	-	0	transcript_id "Ledus.S5G063500.t1"; gene_id "Ledus.S5G063500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11411.t1 is derived from g5029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4111723	4114389	.	-	.	Ledus.S4G056700
Ledus.S4	AUGUSTUS	transcript	4111723	4114389	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	stop_codon	4111720	4111722	.	-	0	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	CDS	4111723	4113052	0.99	-	1	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	exon	4111723	4113052	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	intron	4113053	4113181	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	CDS	4113182	4113260	1	-	2	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	exon	4113182	4113260	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	intron	4113261	4113404	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	CDS	4113405	4113461	1	-	2	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	exon	4113405	4113461	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	intron	4113462	4113582	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	CDS	4113583	4113668	0.99	-	1	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	exon	4113583	4113668	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	intron	4113669	4113778	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	CDS	4113779	4113865	0.99	-	1	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	exon	4113779	4113865	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	intron	4113866	4113979	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	CDS	4113980	4114078	1	-	1	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	exon	4113980	4114078	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	intron	4114079	4114165	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	CDS	4114166	4114389	1	-	0	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	exon	4114166	4114389	.	-	.	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
Ledus.S4	AUGUSTUS	start_codon	4114387	4114389	.	-	0	transcript_id "Ledus.S4G056700.t1"; gene_id "Ledus.S4G056700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4322.t1 is derived from g1758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16276622	16279636	.	-	.	Ledus.S1G174300
Ledus.S1	AUGUSTUS	transcript	16276622	16279636	.	-	.	transcript_id "Ledus.S1G174300.t1"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	stop_codon	16276619	16276621	.	-	0	transcript_id "Ledus.S1G174300.t1"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	CDS	16276622	16276665	0.99	-	2	transcript_id "Ledus.S1G174300.t1"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	exon	16276622	16276665	.	-	.	transcript_id "Ledus.S1G174300.t1"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	intron	16276666	16276929	.	-	.	transcript_id "Ledus.S1G174300.t1"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	CDS	16276930	16276994	0.47	-	1	transcript_id "Ledus.S1G174300.t1"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	exon	16276930	16276994	.	-	.	transcript_id "Ledus.S1G174300.t1"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	intron	16276995	16277099	.	-	.	transcript_id "Ledus.S1G174300.t1"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	CDS	16277100	16279636	0.3	-	0	transcript_id "Ledus.S1G174300.t1"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	exon	16277100	16279636	.	-	.	transcript_id "Ledus.S1G174300.t1"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	start_codon	16279634	16279636	.	-	0	transcript_id "Ledus.S1G174300.t1"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	transcript	16276670	16279636	.	-	.	transcript_id "Ledus.S1G174300.t2"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	stop_codon	16276667	16276669	.	-	0	transcript_id "Ledus.S1G174300.t2"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	CDS	16276670	16276702	0.42	-	0	transcript_id "Ledus.S1G174300.t2"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	exon	16276670	16276702	.	-	.	transcript_id "Ledus.S1G174300.t2"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	intron	16276703	16276929	.	-	.	transcript_id "Ledus.S1G174300.t2"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	CDS	16276930	16276981	0.7	-	1	transcript_id "Ledus.S1G174300.t2"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	exon	16276930	16276981	.	-	.	transcript_id "Ledus.S1G174300.t2"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	intron	16276982	16277099	.	-	.	transcript_id "Ledus.S1G174300.t2"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	CDS	16277100	16279636	0.43	-	0	transcript_id "Ledus.S1G174300.t2"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	exon	16277100	16279636	.	-	.	transcript_id "Ledus.S1G174300.t2"; gene_id "Ledus.S1G174300"
Ledus.S1	AUGUSTUS	start_codon	16279634	16279636	.	-	0	transcript_id "Ledus.S1G174300.t2"; gene_id "Ledus.S1G174300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5378.t1 is derived from g2817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23920180	23922598	.	-	.	Ledus.S1G279900
Ledus.S1	AUGUSTUS	transcript	23920180	23922598	.	-	.	transcript_id "Ledus.S1G279900.t1"; gene_id "Ledus.S1G279900"
Ledus.S1	AUGUSTUS	stop_codon	23920177	23920179	.	-	0	transcript_id "Ledus.S1G279900.t1"; gene_id "Ledus.S1G279900"
Ledus.S1	AUGUSTUS	CDS	23920180	23922232	1	-	1	transcript_id "Ledus.S1G279900.t1"; gene_id "Ledus.S1G279900"
Ledus.S1	AUGUSTUS	exon	23920180	23922232	.	-	.	transcript_id "Ledus.S1G279900.t1"; gene_id "Ledus.S1G279900"
Ledus.S1	AUGUSTUS	intron	23922233	23922326	.	-	.	transcript_id "Ledus.S1G279900.t1"; gene_id "Ledus.S1G279900"
Ledus.S1	AUGUSTUS	CDS	23922327	23922598	0.59	-	0	transcript_id "Ledus.S1G279900.t1"; gene_id "Ledus.S1G279900"
Ledus.S1	AUGUSTUS	exon	23922327	23922598	.	-	.	transcript_id "Ledus.S1G279900.t1"; gene_id "Ledus.S1G279900"
Ledus.S1	AUGUSTUS	start_codon	23922596	23922598	.	-	0	transcript_id "Ledus.S1G279900.t1"; gene_id "Ledus.S1G279900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8117.t1 is derived from g12788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9203573	9209048	.	+	.	Ledus.S5G089500
Ledus.S5	AUGUSTUS	transcript	9203573	9209048	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	start_codon	9203573	9203575	.	+	0	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9203573	9203724	0.62	+	0	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9203573	9203724	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9203725	9204003	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9204004	9204114	1	+	1	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9204004	9204114	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9204115	9204276	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9204277	9204335	1	+	1	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9204277	9204335	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9204336	9204441	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9204442	9204581	0.92	+	2	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9204442	9204581	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9204582	9204698	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9204699	9204896	1	+	0	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9204699	9204896	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9204897	9204981	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9204982	9205178	0.91	+	0	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9204982	9205178	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9205179	9205289	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9205290	9205389	1	+	1	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9205290	9205389	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9205390	9205479	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9205480	9205999	0.69	+	0	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9205480	9205999	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9206000	9206244	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9206245	9206285	0.93	+	2	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9206245	9206285	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9206286	9206461	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9206462	9206545	1	+	0	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9206462	9206545	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9206546	9206673	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9206674	9207011	1	+	0	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9206674	9207011	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9207012	9207144	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9207145	9207495	1	+	1	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9207145	9207495	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9207496	9207580	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9207581	9207662	1	+	1	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9207581	9207662	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9207663	9207802	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9207803	9207992	1	+	0	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9207803	9207992	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9207993	9208078	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9208079	9208235	1	+	2	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9208079	9208235	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9208236	9208536	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9208537	9208636	0.91	+	1	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9208537	9208636	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	intron	9208637	9208763	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	CDS	9208764	9209048	0.36	+	0	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	exon	9208764	9209048	.	+	.	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
Ledus.S5	AUGUSTUS	stop_codon	9209049	9209051	.	+	0	transcript_id "Ledus.S5G089500.t1"; gene_id "Ledus.S5G089500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8250.t1 is derived from g12921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10159516	10161520	.	+	.	Ledus.S5G102800
Ledus.S5	AUGUSTUS	transcript	10159516	10161520	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	start_codon	10159516	10159518	.	+	0	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	CDS	10159516	10159642	1	+	0	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	exon	10159516	10159642	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	intron	10159643	10159834	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	CDS	10159835	10159961	1	+	2	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	exon	10159835	10159961	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	intron	10159962	10160060	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	CDS	10160061	10160188	1	+	1	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	exon	10160061	10160188	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	intron	10160189	10160302	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	CDS	10160303	10160442	1	+	2	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	exon	10160303	10160442	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	intron	10160443	10160584	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	CDS	10160585	10160653	1	+	0	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	exon	10160585	10160653	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	intron	10160654	10160915	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	CDS	10160916	10161051	1	+	0	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	exon	10160916	10161051	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	intron	10161052	10161155	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	CDS	10161156	10161218	1	+	2	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	exon	10161156	10161218	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	intron	10161219	10161305	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	CDS	10161306	10161349	1	+	2	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	exon	10161306	10161349	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	intron	10161350	10161436	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	CDS	10161437	10161520	1	+	0	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	exon	10161437	10161520	.	+	.	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
Ledus.S5	AUGUSTUS	stop_codon	10161521	10161523	.	+	0	transcript_id "Ledus.S5G102800.t1"; gene_id "Ledus.S5G102800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7101.t1 is derived from g6632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1545884	1549618	.	+	.	Ledus.C7G016200
Ledus.C7	AUGUSTUS	transcript	1545884	1549618	.	+	.	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	start_codon	1545884	1545886	.	+	0	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	CDS	1545884	1546270	0.39	+	0	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	exon	1545884	1546270	.	+	.	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	intron	1546271	1546359	.	+	.	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	CDS	1546360	1546554	1	+	0	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	exon	1546360	1546554	.	+	.	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	intron	1546555	1546681	.	+	.	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	CDS	1546682	1546711	1	+	0	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	exon	1546682	1546711	.	+	.	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	intron	1546712	1547264	.	+	.	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	CDS	1547265	1547440	0.99	+	0	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	exon	1547265	1547440	.	+	.	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	intron	1547441	1547519	.	+	.	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	CDS	1547520	1548387	1	+	1	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	exon	1547520	1548387	.	+	.	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	intron	1548388	1549069	.	+	.	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	CDS	1549070	1549618	0.99	+	0	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	exon	1549070	1549618	.	+	.	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
Ledus.C7	AUGUSTUS	stop_codon	1549619	1549621	.	+	0	transcript_id "Ledus.C7G016200.t1"; gene_id "Ledus.C7G016200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3640.t1 is derived from g1076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10330170	10332612	.	-	.	Ledus.S1G106100
Ledus.S1	AUGUSTUS	transcript	10330170	10332612	.	-	.	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	stop_codon	10330167	10330169	.	-	0	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	CDS	10330170	10330344	0.93	-	1	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	exon	10330170	10330344	.	-	.	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	intron	10330345	10330452	.	-	.	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	CDS	10330453	10330589	1	-	0	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	exon	10330453	10330589	.	-	.	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	intron	10330590	10330699	.	-	.	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	CDS	10330700	10330795	1	-	0	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	exon	10330700	10330795	.	-	.	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	intron	10330796	10330919	.	-	.	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	CDS	10330920	10331862	1	-	1	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	exon	10330920	10331862	.	-	.	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	intron	10331863	10332391	.	-	.	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	CDS	10332392	10332612	0.69	-	0	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	exon	10332392	10332612	.	-	.	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
Ledus.S1	AUGUSTUS	start_codon	10332610	10332612	.	-	0	transcript_id "Ledus.S1G106100.t1"; gene_id "Ledus.S1G106100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5220.t1 is derived from g2659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22525161	22525664	.	-	.	Ledus.S1G264100
Ledus.S1	AUGUSTUS	transcript	22525161	22525664	.	-	.	transcript_id "Ledus.S1G264100.t1"; gene_id "Ledus.S1G264100"
Ledus.S1	AUGUSTUS	stop_codon	22525158	22525160	.	-	0	transcript_id "Ledus.S1G264100.t1"; gene_id "Ledus.S1G264100"
Ledus.S1	AUGUSTUS	CDS	22525161	22525664	0.89	-	0	transcript_id "Ledus.S1G264100.t1"; gene_id "Ledus.S1G264100"
Ledus.S1	AUGUSTUS	exon	22525161	22525664	.	-	.	transcript_id "Ledus.S1G264100.t1"; gene_id "Ledus.S1G264100"
Ledus.S1	AUGUSTUS	start_codon	22525662	22525664	.	-	0	transcript_id "Ledus.S1G264100.t1"; gene_id "Ledus.S1G264100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11015.t1 is derived from g4633.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1124721	1125245	.	-	.	Ledus.S4G017100
Ledus.S4	AUGUSTUS	transcript	1124721	1125245	.	-	.	transcript_id "Ledus.S4G017100.t1"; gene_id "Ledus.S4G017100"
Ledus.S4	AUGUSTUS	stop_codon	1124718	1124720	.	-	0	transcript_id "Ledus.S4G017100.t1"; gene_id "Ledus.S4G017100"
Ledus.S4	AUGUSTUS	CDS	1124721	1124721	0.53	-	1	transcript_id "Ledus.S4G017100.t1"; gene_id "Ledus.S4G017100"
Ledus.S4	AUGUSTUS	exon	1124721	1124721	.	-	.	transcript_id "Ledus.S4G017100.t1"; gene_id "Ledus.S4G017100"
Ledus.S4	AUGUSTUS	intron	1124722	1124973	.	-	.	transcript_id "Ledus.S4G017100.t1"; gene_id "Ledus.S4G017100"
Ledus.S4	AUGUSTUS	CDS	1124974	1125245	0.87	-	0	transcript_id "Ledus.S4G017100.t1"; gene_id "Ledus.S4G017100"
Ledus.S4	AUGUSTUS	exon	1124974	1125245	.	-	.	transcript_id "Ledus.S4G017100.t1"; gene_id "Ledus.S4G017100"
Ledus.S4	AUGUSTUS	start_codon	1125243	1125245	.	-	0	transcript_id "Ledus.S4G017100.t1"; gene_id "Ledus.S4G017100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5628.t1 is derived from g3067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25439927	25441534	.	+	.	Ledus.S1G304900
Ledus.S1	AUGUSTUS	transcript	25439927	25441534	.	+	.	transcript_id "Ledus.S1G304900.t1"; gene_id "Ledus.S1G304900"
Ledus.S1	AUGUSTUS	start_codon	25439927	25439929	.	+	0	transcript_id "Ledus.S1G304900.t1"; gene_id "Ledus.S1G304900"
Ledus.S1	AUGUSTUS	CDS	25439927	25439947	0.53	+	0	transcript_id "Ledus.S1G304900.t1"; gene_id "Ledus.S1G304900"
Ledus.S1	AUGUSTUS	exon	25439927	25439947	.	+	.	transcript_id "Ledus.S1G304900.t1"; gene_id "Ledus.S1G304900"
Ledus.S1	AUGUSTUS	intron	25439948	25440151	.	+	.	transcript_id "Ledus.S1G304900.t1"; gene_id "Ledus.S1G304900"
Ledus.S1	AUGUSTUS	CDS	25440152	25441534	0.69	+	0	transcript_id "Ledus.S1G304900.t1"; gene_id "Ledus.S1G304900"
Ledus.S1	AUGUSTUS	exon	25440152	25441534	.	+	.	transcript_id "Ledus.S1G304900.t1"; gene_id "Ledus.S1G304900"
Ledus.S1	AUGUSTUS	stop_codon	25441535	25441537	.	+	0	transcript_id "Ledus.S1G304900.t1"; gene_id "Ledus.S1G304900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7810.t1 is derived from g12481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6950132	6951077	.	+	.	Ledus.S5G058800
Ledus.S5	AUGUSTUS	transcript	6950132	6951077	.	+	.	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	start_codon	6950132	6950134	.	+	0	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	CDS	6950132	6950258	0.45	+	0	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	exon	6950132	6950258	.	+	.	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	intron	6950259	6950404	.	+	.	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	CDS	6950405	6950454	1	+	2	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	exon	6950405	6950454	.	+	.	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	intron	6950455	6950567	.	+	.	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	CDS	6950568	6950716	1	+	0	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	exon	6950568	6950716	.	+	.	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	intron	6950717	6950854	.	+	.	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	CDS	6950855	6951077	0.99	+	1	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	exon	6950855	6951077	.	+	.	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
Ledus.S5	AUGUSTUS	stop_codon	6951078	6951080	.	+	0	transcript_id "Ledus.S5G058800.t1"; gene_id "Ledus.S5G058800"
# This transcript jg7861.t1 is derived from g12532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7512656	7513181	.	+	.	Ledus.S5G063900
Ledus.S5	AUGUSTUS	transcript	7512656	7513181	.	+	.	transcript_id "Ledus.S5G063900.t1"; gene_id "Ledus.S5G063900"
Ledus.S5	AUGUSTUS	start_codon	7512656	7512658	.	+	0	transcript_id "Ledus.S5G063900.t1"; gene_id "Ledus.S5G063900"
Ledus.S5	AUGUSTUS	CDS	7512656	7512742	0.65	+	0	transcript_id "Ledus.S5G063900.t1"; gene_id "Ledus.S5G063900"
Ledus.S5	AUGUSTUS	exon	7512656	7512742	.	+	.	transcript_id "Ledus.S5G063900.t1"; gene_id "Ledus.S5G063900"
Ledus.S5	AUGUSTUS	intron	7512743	7512851	.	+	.	transcript_id "Ledus.S5G063900.t1"; gene_id "Ledus.S5G063900"
Ledus.S5	AUGUSTUS	CDS	7512852	7513181	0.13	+	0	transcript_id "Ledus.S5G063900.t1"; gene_id "Ledus.S5G063900"
Ledus.S5	AUGUSTUS	exon	7512852	7513181	.	+	.	transcript_id "Ledus.S5G063900.t1"; gene_id "Ledus.S5G063900"
Ledus.S5	AUGUSTUS	stop_codon	7513182	7513184	.	+	0	transcript_id "Ledus.S5G063900.t1"; gene_id "Ledus.S5G063900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7387.t1 is derived from g12058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1995242	1996983	.	-	.	Ledus.S5G016500
Ledus.S5	AUGUSTUS	transcript	1995242	1996983	.	-	.	transcript_id "Ledus.S5G016500.t1"; gene_id "Ledus.S5G016500"
Ledus.S5	AUGUSTUS	stop_codon	1995239	1995241	.	-	0	transcript_id "Ledus.S5G016500.t1"; gene_id "Ledus.S5G016500"
Ledus.S5	AUGUSTUS	CDS	1995242	1995449	0.83	-	1	transcript_id "Ledus.S5G016500.t1"; gene_id "Ledus.S5G016500"
Ledus.S5	AUGUSTUS	exon	1995242	1995449	.	-	.	transcript_id "Ledus.S5G016500.t1"; gene_id "Ledus.S5G016500"
Ledus.S5	AUGUSTUS	intron	1995450	1995514	.	-	.	transcript_id "Ledus.S5G016500.t1"; gene_id "Ledus.S5G016500"
Ledus.S5	AUGUSTUS	CDS	1995515	1996983	0.58	-	0	transcript_id "Ledus.S5G016500.t1"; gene_id "Ledus.S5G016500"
Ledus.S5	AUGUSTUS	exon	1995515	1996983	.	-	.	transcript_id "Ledus.S5G016500.t1"; gene_id "Ledus.S5G016500"
Ledus.S5	AUGUSTUS	start_codon	1996981	1996983	.	-	0	transcript_id "Ledus.S5G016500.t1"; gene_id "Ledus.S5G016500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10756.t1 is derived from g11787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17506650	17508071	.	-	.	Ledus.S3G223300
Ledus.S3	AUGUSTUS	transcript	17506650	17508071	.	-	.	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	stop_codon	17506647	17506649	.	-	0	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	CDS	17506650	17506746	0.69	-	1	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	exon	17506650	17506746	.	-	.	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	intron	17506747	17506847	.	-	.	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	CDS	17506848	17507020	1	-	0	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	exon	17506848	17507020	.	-	.	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	intron	17507021	17507092	.	-	.	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	CDS	17507093	17507230	1	-	0	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	exon	17507093	17507230	.	-	.	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	intron	17507231	17507368	.	-	.	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	CDS	17507369	17507446	0.65	-	0	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	exon	17507369	17507446	.	-	.	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	intron	17507447	17507548	.	-	.	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	CDS	17507549	17507821	0.56	-	0	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	exon	17507549	17507821	.	-	.	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	intron	17507822	17507897	.	-	.	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	CDS	17507898	17508071	0.37	-	0	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	exon	17507898	17508071	.	-	.	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	start_codon	17508069	17508071	.	-	0	transcript_id "Ledus.S3G223300.t1"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	transcript	17506650	17508071	.	-	.	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	stop_codon	17506647	17506649	.	-	0	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	CDS	17506650	17506746	0.72	-	1	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	exon	17506650	17506746	.	-	.	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	intron	17506747	17506847	.	-	.	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	CDS	17506848	17507020	0.98	-	0	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	exon	17506848	17507020	.	-	.	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	intron	17507021	17507092	.	-	.	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	CDS	17507093	17507248	0.8	-	0	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	exon	17507093	17507248	.	-	.	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	intron	17507249	17507368	.	-	.	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	CDS	17507369	17507446	0.69	-	0	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	exon	17507369	17507446	.	-	.	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	intron	17507447	17507548	.	-	.	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	CDS	17507549	17507821	0.65	-	0	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	exon	17507549	17507821	.	-	.	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	intron	17507822	17507897	.	-	.	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	CDS	17507898	17508071	0.26	-	0	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	exon	17507898	17508071	.	-	.	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
Ledus.S3	AUGUSTUS	start_codon	17508069	17508071	.	-	0	transcript_id "Ledus.S3G223300.t2"; gene_id "Ledus.S3G223300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5750.t1 is derived from g3190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26475111	26480563	.	-	.	Ledus.S1G317100
Ledus.S1	AUGUSTUS	transcript	26475111	26480563	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	stop_codon	26475108	26475110	.	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26475111	26475200	1	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26475111	26475200	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26475201	26475300	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26475301	26475873	1	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26475301	26475873	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26475874	26475975	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26475976	26476059	1	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26475976	26476059	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26476060	26476227	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26476228	26476374	1	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26476228	26476374	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26476375	26476465	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26476466	26476609	1	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26476466	26476609	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26476610	26476711	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26476712	26476861	1	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26476712	26476861	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26476862	26477004	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26477005	26477076	1	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26477005	26477076	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26477077	26477316	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26477317	26477748	0.62	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26477317	26477748	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26477749	26477854	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26477855	26477936	1	-	1	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26477855	26477936	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26477937	26478025	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26478026	26478243	1	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26478026	26478243	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26478244	26478410	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26478411	26478648	0.97	-	1	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26478411	26478648	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26478649	26478797	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26478798	26478910	1	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26478798	26478910	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26478911	26479007	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26479008	26479586	1	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26479008	26479586	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26479587	26479868	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26479869	26480025	1	-	1	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26479869	26480025	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26480026	26480119	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26480120	26480225	0.97	-	2	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26480120	26480225	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26480226	26480293	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26480294	26480403	0.53	-	1	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26480294	26480403	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	intron	26480404	26480492	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	CDS	26480493	26480563	0.9	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	exon	26480493	26480563	.	-	.	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
Ledus.S1	AUGUSTUS	start_codon	26480561	26480563	.	-	0	transcript_id "Ledus.S1G317100.t1"; gene_id "Ledus.S1G317100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3070.t1 is derived from g505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5689422	5691899	.	+	.	Ledus.S1G049100
Ledus.S1	AUGUSTUS	transcript	5689422	5691899	.	+	.	transcript_id "Ledus.S1G049100.t1"; gene_id "Ledus.S1G049100"
Ledus.S1	AUGUSTUS	start_codon	5689422	5689424	.	+	0	transcript_id "Ledus.S1G049100.t1"; gene_id "Ledus.S1G049100"
Ledus.S1	AUGUSTUS	CDS	5689422	5690572	0.91	+	0	transcript_id "Ledus.S1G049100.t1"; gene_id "Ledus.S1G049100"
Ledus.S1	AUGUSTUS	exon	5689422	5690572	.	+	.	transcript_id "Ledus.S1G049100.t1"; gene_id "Ledus.S1G049100"
Ledus.S1	AUGUSTUS	intron	5690573	5690658	.	+	.	transcript_id "Ledus.S1G049100.t1"; gene_id "Ledus.S1G049100"
Ledus.S1	AUGUSTUS	CDS	5690659	5690813	1	+	1	transcript_id "Ledus.S1G049100.t1"; gene_id "Ledus.S1G049100"
Ledus.S1	AUGUSTUS	exon	5690659	5690813	.	+	.	transcript_id "Ledus.S1G049100.t1"; gene_id "Ledus.S1G049100"
Ledus.S1	AUGUSTUS	intron	5690814	5690892	.	+	.	transcript_id "Ledus.S1G049100.t1"; gene_id "Ledus.S1G049100"
Ledus.S1	AUGUSTUS	CDS	5690893	5691899	1	+	2	transcript_id "Ledus.S1G049100.t1"; gene_id "Ledus.S1G049100"
Ledus.S1	AUGUSTUS	exon	5690893	5691899	.	+	.	transcript_id "Ledus.S1G049100.t1"; gene_id "Ledus.S1G049100"
Ledus.S1	AUGUSTUS	stop_codon	5691900	5691902	.	+	0	transcript_id "Ledus.S1G049100.t1"; gene_id "Ledus.S1G049100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg869.t1 is derived from g7730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5893101	5893385	.	-	.	Ledus.S2G075100
Ledus.S2	AUGUSTUS	transcript	5893101	5893385	.	-	.	transcript_id "Ledus.S2G075100.t1"; gene_id "Ledus.S2G075100"
Ledus.S2	AUGUSTUS	stop_codon	5893098	5893100	.	-	0	transcript_id "Ledus.S2G075100.t1"; gene_id "Ledus.S2G075100"
Ledus.S2	AUGUSTUS	CDS	5893101	5893385	0.87	-	0	transcript_id "Ledus.S2G075100.t1"; gene_id "Ledus.S2G075100"
Ledus.S2	AUGUSTUS	exon	5893101	5893385	.	-	.	transcript_id "Ledus.S2G075100.t1"; gene_id "Ledus.S2G075100"
Ledus.S2	AUGUSTUS	start_codon	5893383	5893385	.	-	0	transcript_id "Ledus.S2G075100.t1"; gene_id "Ledus.S2G075100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8564.t1 is derived from g9594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	197728	198382	.	+	.	Ledus.S3G004100
Ledus.S3	AUGUSTUS	transcript	197728	198382	.	+	.	transcript_id "Ledus.S3G004100.t1"; gene_id "Ledus.S3G004100"
Ledus.S3	AUGUSTUS	start_codon	197728	197730	.	+	0	transcript_id "Ledus.S3G004100.t1"; gene_id "Ledus.S3G004100"
Ledus.S3	AUGUSTUS	CDS	197728	197866	1	+	0	transcript_id "Ledus.S3G004100.t1"; gene_id "Ledus.S3G004100"
Ledus.S3	AUGUSTUS	exon	197728	197866	.	+	.	transcript_id "Ledus.S3G004100.t1"; gene_id "Ledus.S3G004100"
Ledus.S3	AUGUSTUS	intron	197867	198038	.	+	.	transcript_id "Ledus.S3G004100.t1"; gene_id "Ledus.S3G004100"
Ledus.S3	AUGUSTUS	CDS	198039	198382	0.57	+	2	transcript_id "Ledus.S3G004100.t1"; gene_id "Ledus.S3G004100"
Ledus.S3	AUGUSTUS	exon	198039	198382	.	+	.	transcript_id "Ledus.S3G004100.t1"; gene_id "Ledus.S3G004100"
Ledus.S3	AUGUSTUS	stop_codon	198383	198385	.	+	0	transcript_id "Ledus.S3G004100.t1"; gene_id "Ledus.S3G004100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11229.t1 is derived from g4847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2830347	2831287	.	-	.	Ledus.S4G038500
Ledus.S4	AUGUSTUS	transcript	2830347	2831287	.	-	.	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	stop_codon	2830344	2830346	.	-	0	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	CDS	2830347	2830400	0.37	-	0	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	exon	2830347	2830400	.	-	.	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	intron	2830401	2830564	.	-	.	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	CDS	2830565	2830637	0.36	-	1	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	exon	2830565	2830637	.	-	.	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	intron	2830638	2830955	.	-	.	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	CDS	2830956	2831048	0.41	-	1	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	exon	2830956	2831048	.	-	.	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	intron	2831049	2831135	.	-	.	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	CDS	2831136	2831287	0.41	-	0	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	exon	2831136	2831287	.	-	.	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
Ledus.S4	AUGUSTUS	start_codon	2831285	2831287	.	-	0	transcript_id "Ledus.S4G038500.t1"; gene_id "Ledus.S4G038500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8294.t1 is derived from g12965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10538408	10538838	.	+	.	Ledus.S5G107200
Ledus.S5	AUGUSTUS	transcript	10538408	10538838	.	+	.	transcript_id "Ledus.S5G107200.t1"; gene_id "Ledus.S5G107200"
Ledus.S5	AUGUSTUS	start_codon	10538408	10538410	.	+	0	transcript_id "Ledus.S5G107200.t1"; gene_id "Ledus.S5G107200"
Ledus.S5	AUGUSTUS	CDS	10538408	10538613	0.52	+	0	transcript_id "Ledus.S5G107200.t1"; gene_id "Ledus.S5G107200"
Ledus.S5	AUGUSTUS	exon	10538408	10538613	.	+	.	transcript_id "Ledus.S5G107200.t1"; gene_id "Ledus.S5G107200"
Ledus.S5	AUGUSTUS	intron	10538614	10538837	.	+	.	transcript_id "Ledus.S5G107200.t1"; gene_id "Ledus.S5G107200"
Ledus.S5	AUGUSTUS	CDS	10538838	10538838	0.53	+	1	transcript_id "Ledus.S5G107200.t1"; gene_id "Ledus.S5G107200"
Ledus.S5	AUGUSTUS	exon	10538838	10538838	.	+	.	transcript_id "Ledus.S5G107200.t1"; gene_id "Ledus.S5G107200"
Ledus.S5	AUGUSTUS	stop_codon	10538839	10538841	.	+	0	transcript_id "Ledus.S5G107200.t1"; gene_id "Ledus.S5G107200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6436.t1 is derived from g3879.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31240082	31242896	.	+	.	Ledus.S1G385700
Ledus.S1	AUGUSTUS	transcript	31240082	31242896	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	start_codon	31240082	31240084	.	+	0	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31240082	31240094	0.3	+	0	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31240082	31240094	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	intron	31240095	31240377	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31240378	31240493	0.62	+	2	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31240378	31240493	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	intron	31240494	31240613	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31240614	31240750	1	+	0	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31240614	31240750	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	intron	31240751	31240870	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31240871	31240978	1	+	1	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31240871	31240978	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	intron	31240979	31241135	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31241136	31241187	1	+	1	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31241136	31241187	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	intron	31241188	31241266	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31241267	31241497	1	+	0	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31241267	31241497	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	intron	31241498	31241622	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31241623	31241721	1	+	0	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31241623	31241721	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	intron	31241722	31241815	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31241816	31241884	1	+	0	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31241816	31241884	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	intron	31241885	31241974	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31241975	31242090	1	+	0	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31241975	31242090	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	intron	31242091	31242239	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31242240	31242300	0.89	+	1	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31242240	31242300	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	intron	31242301	31242401	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31242402	31242556	0.75	+	0	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31242402	31242556	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	intron	31242557	31242638	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31242639	31242720	1	+	1	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31242639	31242720	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	intron	31242721	31242800	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	CDS	31242801	31242896	1	+	0	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	exon	31242801	31242896	.	+	.	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
Ledus.S1	AUGUSTUS	stop_codon	31242897	31242899	.	+	0	transcript_id "Ledus.S1G385700.t1"; gene_id "Ledus.S1G385700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3208.t1 is derived from g643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6830518	6831895	.	+	.	Ledus.S1G062900
Ledus.S1	AUGUSTUS	transcript	6830518	6831895	.	+	.	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	start_codon	6830518	6830520	.	+	0	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	CDS	6830518	6830761	1	+	0	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	exon	6830518	6830761	.	+	.	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	intron	6830762	6830852	.	+	.	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	CDS	6830853	6831032	0.89	+	2	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	exon	6830853	6831032	.	+	.	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	intron	6831033	6831130	.	+	.	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	CDS	6831131	6831154	1	+	2	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	exon	6831131	6831154	.	+	.	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	intron	6831155	6831231	.	+	.	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	CDS	6831232	6831347	0.94	+	2	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	exon	6831232	6831347	.	+	.	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	intron	6831348	6831430	.	+	.	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	CDS	6831431	6831895	1	+	0	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	exon	6831431	6831895	.	+	.	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
Ledus.S1	AUGUSTUS	stop_codon	6831896	6831898	.	+	0	transcript_id "Ledus.S1G062900.t1"; gene_id "Ledus.S1G062900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10261.t1 is derived from g11291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13890263	13892317	.	+	.	Ledus.S3G173800
Ledus.S3	AUGUSTUS	transcript	13890263	13892317	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	start_codon	13890263	13890265	.	+	0	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	CDS	13890263	13890326	0.99	+	0	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	exon	13890263	13890326	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	intron	13890327	13890432	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	CDS	13890433	13890482	0.84	+	2	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	exon	13890433	13890482	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	intron	13890483	13890627	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	CDS	13890628	13890772	1	+	0	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	exon	13890628	13890772	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	intron	13890773	13890864	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	CDS	13890865	13890966	1	+	2	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	exon	13890865	13890966	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	intron	13890967	13891131	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	CDS	13891132	13891397	1	+	2	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	exon	13891132	13891397	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	intron	13891398	13891468	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	CDS	13891469	13891543	1	+	0	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	exon	13891469	13891543	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	intron	13891544	13891642	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	CDS	13891643	13891867	1	+	0	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	exon	13891643	13891867	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	intron	13891868	13891947	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	CDS	13891948	13892037	0.54	+	0	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	exon	13891948	13892037	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	intron	13892038	13892134	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	CDS	13892135	13892317	0.52	+	0	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	exon	13892135	13892317	.	+	.	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
Ledus.S3	AUGUSTUS	stop_codon	13892318	13892320	.	+	0	transcript_id "Ledus.S3G173800.t1"; gene_id "Ledus.S3G173800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9104.t1 is derived from g10134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4613493	4614059	.	+	.	Ledus.S3G058100
Ledus.S3	AUGUSTUS	transcript	4613493	4614059	.	+	.	transcript_id "Ledus.S3G058100.t1"; gene_id "Ledus.S3G058100"
Ledus.S3	AUGUSTUS	start_codon	4613493	4613495	.	+	0	transcript_id "Ledus.S3G058100.t1"; gene_id "Ledus.S3G058100"
Ledus.S3	AUGUSTUS	CDS	4613493	4614059	0.95	+	0	transcript_id "Ledus.S3G058100.t1"; gene_id "Ledus.S3G058100"
Ledus.S3	AUGUSTUS	exon	4613493	4614059	.	+	.	transcript_id "Ledus.S3G058100.t1"; gene_id "Ledus.S3G058100"
Ledus.S3	AUGUSTUS	stop_codon	4614060	4614062	.	+	0	transcript_id "Ledus.S3G058100.t1"; gene_id "Ledus.S3G058100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6071.t1 is derived from g3514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28814227	28815531	.	+	.	Ledus.S1G349200
Ledus.S1	AUGUSTUS	transcript	28814227	28815531	.	+	.	transcript_id "Ledus.S1G349200.t1"; gene_id "Ledus.S1G349200"
Ledus.S1	AUGUSTUS	start_codon	28814227	28814229	.	+	0	transcript_id "Ledus.S1G349200.t1"; gene_id "Ledus.S1G349200"
Ledus.S1	AUGUSTUS	CDS	28814227	28815531	0.36	+	0	transcript_id "Ledus.S1G349200.t1"; gene_id "Ledus.S1G349200"
Ledus.S1	AUGUSTUS	exon	28814227	28815531	.	+	.	transcript_id "Ledus.S1G349200.t1"; gene_id "Ledus.S1G349200"
Ledus.S1	AUGUSTUS	stop_codon	28815532	28815534	.	+	0	transcript_id "Ledus.S1G349200.t1"; gene_id "Ledus.S1G349200"
# This transcript jg10785.t2 is derived from g11817.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10786.t1 is derived from g11818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17701574	17704984	.	+	.	Ledus.S3G226300
Ledus.S3	AUGUSTUS	transcript	17701574	17704984	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	start_codon	17701574	17701576	.	+	0	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	CDS	17701574	17701888	1	+	0	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	exon	17701574	17701888	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	intron	17701889	17702042	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	CDS	17702043	17702234	1	+	0	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	exon	17702043	17702234	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	intron	17702235	17702329	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	CDS	17702330	17702536	0.99	+	0	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	exon	17702330	17702536	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	intron	17702537	17702653	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	CDS	17702654	17702919	0.99	+	0	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	exon	17702654	17702919	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	intron	17702920	17702991	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	CDS	17702992	17703158	0.68	+	1	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	exon	17702992	17703158	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	intron	17703159	17703295	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	CDS	17703296	17703510	0.62	+	2	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	exon	17703296	17703510	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	intron	17703511	17703631	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	CDS	17703632	17703824	0.97	+	0	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	exon	17703632	17703824	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	intron	17703825	17703920	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	CDS	17703921	17704069	1	+	2	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	exon	17703921	17704069	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	intron	17704070	17704165	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	CDS	17704166	17704701	1	+	0	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	exon	17704166	17704701	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	intron	17704702	17704800	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	CDS	17704801	17704984	1	+	1	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	exon	17704801	17704984	.	+	.	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
Ledus.S3	AUGUSTUS	stop_codon	17704985	17704987	.	+	0	transcript_id "Ledus.S3G226300.t1"; gene_id "Ledus.S3G226300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8064.t1 is derived from g12735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9020042	9024421	.	-	.	Ledus.S5G084200
Ledus.S5	AUGUSTUS	transcript	9020042	9024421	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	stop_codon	9020039	9020041	.	-	0	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9020042	9020236	0.96	-	0	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9020042	9020236	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	intron	9020237	9020348	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9020349	9020533	0.98	-	2	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9020349	9020533	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	intron	9020534	9020634	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9020635	9020693	1	-	1	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9020635	9020693	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	intron	9020694	9020778	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9020779	9020888	0.5	-	0	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9020779	9020888	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	intron	9020889	9021019	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9021020	9022272	1	-	2	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9021020	9022272	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	intron	9022273	9022462	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9022463	9023045	1	-	0	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9022463	9023045	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	intron	9023046	9023136	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9023137	9023247	1	-	0	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9023137	9023247	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	intron	9023248	9023394	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9023395	9023487	1	-	0	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9023395	9023487	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	intron	9023488	9023586	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9023587	9023638	1	-	1	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9023587	9023638	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	intron	9023639	9023771	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9023772	9023869	1	-	0	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9023772	9023869	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	intron	9023870	9024001	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9024002	9024081	1	-	2	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9024002	9024081	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	intron	9024082	9024157	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9024158	9024205	1	-	2	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9024158	9024205	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	intron	9024206	9024369	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	CDS	9024370	9024421	0.97	-	0	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	exon	9024370	9024421	.	-	.	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
Ledus.S5	AUGUSTUS	start_codon	9024419	9024421	.	-	0	transcript_id "Ledus.S5G084200.t1"; gene_id "Ledus.S5G084200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3782.t1 is derived from g1218.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11958639	11958854	.	-	.	Ledus.S1G120300
Ledus.S1	AUGUSTUS	transcript	11958639	11958854	.	-	.	transcript_id "Ledus.S1G120300.t1"; gene_id "Ledus.S1G120300"
Ledus.S1	AUGUSTUS	stop_codon	11958636	11958638	.	-	0	transcript_id "Ledus.S1G120300.t1"; gene_id "Ledus.S1G120300"
Ledus.S1	AUGUSTUS	CDS	11958639	11958854	0.66	-	0	transcript_id "Ledus.S1G120300.t1"; gene_id "Ledus.S1G120300"
Ledus.S1	AUGUSTUS	exon	11958639	11958854	.	-	.	transcript_id "Ledus.S1G120300.t1"; gene_id "Ledus.S1G120300"
Ledus.S1	AUGUSTUS	start_codon	11958852	11958854	.	-	0	transcript_id "Ledus.S1G120300.t1"; gene_id "Ledus.S1G120300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7227.t1 is derived from g11898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	166090	167228	.	+	.	Ledus.S5G000500
Ledus.S5	AUGUSTUS	transcript	166090	167228	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	start_codon	166090	166092	.	+	0	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	CDS	166090	166166	0.41	+	0	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	exon	166090	166166	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	intron	166167	166258	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	CDS	166259	166302	1	+	1	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	exon	166259	166302	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	intron	166303	166401	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	CDS	166402	166495	1	+	2	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	exon	166402	166495	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	intron	166496	166600	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	CDS	166601	166664	1	+	1	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	exon	166601	166664	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	intron	166665	166747	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	CDS	166748	166867	1	+	0	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	exon	166748	166867	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	intron	166868	166955	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	CDS	166956	167064	1	+	0	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	exon	166956	167064	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	intron	167065	167154	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	CDS	167155	167228	1	+	2	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	exon	167155	167228	.	+	.	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
Ledus.S5	AUGUSTUS	stop_codon	167229	167231	.	+	0	transcript_id "Ledus.S5G000500.t1"; gene_id "Ledus.S5G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1603.t1 is derived from g8464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11319208	11319531	.	-	.	Ledus.S2G148500
Ledus.S2	AUGUSTUS	transcript	11319208	11319531	.	-	.	transcript_id "Ledus.S2G148500.t1"; gene_id "Ledus.S2G148500"
Ledus.S2	AUGUSTUS	stop_codon	11319205	11319207	.	-	0	transcript_id "Ledus.S2G148500.t1"; gene_id "Ledus.S2G148500"
Ledus.S2	AUGUSTUS	CDS	11319208	11319531	0.6	-	0	transcript_id "Ledus.S2G148500.t1"; gene_id "Ledus.S2G148500"
Ledus.S2	AUGUSTUS	exon	11319208	11319531	.	-	.	transcript_id "Ledus.S2G148500.t1"; gene_id "Ledus.S2G148500"
Ledus.S2	AUGUSTUS	start_codon	11319529	11319531	.	-	0	transcript_id "Ledus.S2G148500.t1"; gene_id "Ledus.S2G148500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1963.t1 is derived from g8826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13843309	13843918	.	-	.	Ledus.S2G184500
Ledus.S2	AUGUSTUS	transcript	13843309	13843918	.	-	.	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	stop_codon	13843306	13843308	.	-	0	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	CDS	13843309	13843417	0.79	-	1	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	exon	13843309	13843417	.	-	.	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	intron	13843418	13843504	.	-	.	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	CDS	13843505	13843548	1	-	0	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	exon	13843505	13843548	.	-	.	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	intron	13843549	13843687	.	-	.	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	CDS	13843688	13843796	0.81	-	1	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	exon	13843688	13843796	.	-	.	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	intron	13843797	13843892	.	-	.	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	CDS	13843893	13843918	0.8	-	0	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	exon	13843893	13843918	.	-	.	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
Ledus.S2	AUGUSTUS	start_codon	13843916	13843918	.	-	0	transcript_id "Ledus.S2G184500.t1"; gene_id "Ledus.S2G184500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3544.t1 is derived from g980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9366262	9367329	.	+	.	Ledus.S1G096500
Ledus.S1	AUGUSTUS	transcript	9366262	9367329	.	+	.	transcript_id "Ledus.S1G096500.t1"; gene_id "Ledus.S1G096500"
Ledus.S1	AUGUSTUS	start_codon	9366262	9366264	.	+	0	transcript_id "Ledus.S1G096500.t1"; gene_id "Ledus.S1G096500"
Ledus.S1	AUGUSTUS	CDS	9366262	9366284	0.01	+	0	transcript_id "Ledus.S1G096500.t1"; gene_id "Ledus.S1G096500"
Ledus.S1	AUGUSTUS	exon	9366262	9366284	.	+	.	transcript_id "Ledus.S1G096500.t1"; gene_id "Ledus.S1G096500"
Ledus.S1	AUGUSTUS	intron	9366285	9367022	.	+	.	transcript_id "Ledus.S1G096500.t1"; gene_id "Ledus.S1G096500"
Ledus.S1	AUGUSTUS	CDS	9367023	9367329	0.03	+	1	transcript_id "Ledus.S1G096500.t1"; gene_id "Ledus.S1G096500"
Ledus.S1	AUGUSTUS	exon	9367023	9367329	.	+	.	transcript_id "Ledus.S1G096500.t1"; gene_id "Ledus.S1G096500"
Ledus.S1	AUGUSTUS	stop_codon	9367330	9367332	.	+	0	transcript_id "Ledus.S1G096500.t1"; gene_id "Ledus.S1G096500"
# This transcript jg13059.t2 is derived from g6869.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13060.t1 is derived from g6870.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4686145	4690982	.	-	.	Ledus.S6G012200
Ledus.S6	AUGUSTUS	transcript	4686145	4690982	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	stop_codon	4686142	4686144	.	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4686145	4686234	0.39	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4686145	4686234	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4686235	4686447	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4686448	4686555	0.43	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4686448	4686555	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4686556	4686638	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4686639	4686812	0.54	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4686639	4686812	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4686813	4687067	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4687068	4687283	0.84	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4687068	4687283	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4687284	4687465	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4687466	4687543	0.46	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4687466	4687543	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4687544	4687984	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4687985	4688074	0.94	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4687985	4688074	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4688075	4688239	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4688240	4688437	1	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4688240	4688437	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4688438	4688532	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4688533	4688644	1	-	1	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4688533	4688644	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4688645	4688864	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4688865	4688981	1	-	1	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4688865	4688981	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4688982	4689134	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4689135	4689265	0.96	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4689135	4689265	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4689266	4689379	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4689380	4689451	0.99	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4689380	4689451	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4689452	4689567	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4689568	4689681	0.96	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4689568	4689681	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4689682	4689923	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4689924	4690034	0.98	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4689924	4690034	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4690035	4690145	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4690146	4690478	0.86	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4690146	4690478	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4690479	4690757	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4690758	4690778	0.9	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4690758	4690778	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	intron	4690779	4690934	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	CDS	4690935	4690982	0.95	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	exon	4690935	4690982	.	-	.	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
Ledus.S6	AUGUSTUS	start_codon	4690980	4690982	.	-	0	transcript_id "Ledus.S6G012200.t1"; gene_id "Ledus.S6G012200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9272.t1 is derived from g10302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5732850	5737247	.	+	.	Ledus.S3G074900
Ledus.S3	AUGUSTUS	transcript	5732850	5737247	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	start_codon	5732850	5732852	.	+	0	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	CDS	5732850	5732911	0.93	+	0	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	exon	5732850	5732911	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	intron	5732912	5733079	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	CDS	5733080	5733110	0.92	+	1	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	exon	5733080	5733110	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	intron	5733111	5733193	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	CDS	5733194	5734567	0.55	+	0	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	exon	5733194	5734567	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	intron	5734568	5734710	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	CDS	5734711	5734889	0.47	+	0	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	exon	5734711	5734889	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	intron	5734890	5734996	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	CDS	5734997	5735951	0.47	+	1	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	exon	5734997	5735951	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	intron	5735952	5736023	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	CDS	5736024	5736182	1	+	0	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	exon	5736024	5736182	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	intron	5736183	5736281	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	CDS	5736282	5736822	1	+	0	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	exon	5736282	5736822	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	intron	5736823	5737024	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	CDS	5737025	5737061	0.96	+	2	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	exon	5737025	5737061	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	intron	5737062	5737162	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	CDS	5737163	5737247	0.92	+	1	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	exon	5737163	5737247	.	+	.	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
Ledus.S3	AUGUSTUS	stop_codon	5737248	5737250	.	+	0	transcript_id "Ledus.S3G074900.t1"; gene_id "Ledus.S3G074900"
# This transcript jg11431.t2 is derived from g5049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11431.t3 is derived from g5049.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11432.t1 is derived from g5050.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4259609	4260800	.	-	.	Ledus.S4G058800
Ledus.S4	AUGUSTUS	transcript	4260178	4260800	.	-	.	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	stop_codon	4260175	4260177	.	-	0	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	CDS	4260178	4260279	0.99	-	0	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	exon	4260178	4260279	.	-	.	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	intron	4260280	4260374	.	-	.	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	CDS	4260375	4260436	1	-	2	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	exon	4260375	4260436	.	-	.	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	intron	4260437	4260518	.	-	.	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	CDS	4260519	4260630	1	-	0	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	exon	4260519	4260630	.	-	.	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	intron	4260631	4260725	.	-	.	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	CDS	4260726	4260800	0.6	-	0	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	exon	4260726	4260800	.	-	.	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	start_codon	4260798	4260800	.	-	0	transcript_id "Ledus.S4G058800.t1"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	transcript	4259609	4260800	.	-	.	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	stop_codon	4259606	4259608	.	-	0	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	CDS	4259609	4259710	1	-	0	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	exon	4259609	4259710	.	-	.	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	intron	4259711	4260374	.	-	.	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	CDS	4260375	4260436	1	-	2	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	exon	4260375	4260436	.	-	.	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	intron	4260437	4260518	.	-	.	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	CDS	4260519	4260630	1	-	0	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	exon	4260519	4260630	.	-	.	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	intron	4260631	4260725	.	-	.	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	CDS	4260726	4260800	0.6	-	0	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	exon	4260726	4260800	.	-	.	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
Ledus.S4	AUGUSTUS	start_codon	4260798	4260800	.	-	0	transcript_id "Ledus.S4G058800.t2"; gene_id "Ledus.S4G058800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8819.t1 is derived from g9849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2128630	2132155	.	-	.	Ledus.S3G029600
Ledus.S3	AUGUSTUS	transcript	2128630	2132155	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	stop_codon	2128627	2128629	.	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2128630	2128827	1	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2128630	2128827	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2128828	2128905	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2128906	2128986	1	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2128906	2128986	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2128987	2129112	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2129113	2129218	1	-	1	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2129113	2129218	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2129219	2129317	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2129318	2129610	1	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2129318	2129610	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2129611	2129704	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2129705	2129860	1	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2129705	2129860	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2129861	2129947	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2129948	2130058	1	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2129948	2130058	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2130059	2130143	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2130144	2130290	1	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2130144	2130290	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2130291	2130389	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2130390	2130845	0.47	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2130390	2130845	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2130846	2130957	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2130958	2131082	1	-	2	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2130958	2131082	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2131083	2131158	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2131159	2131357	1	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2131159	2131357	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2131358	2131430	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2131431	2131502	1	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2131431	2131502	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2131503	2131612	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2131613	2131699	0.85	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2131613	2131699	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2131700	2131792	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2131793	2131927	1	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2131793	2131927	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2131928	2132026	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2132027	2132155	0.82	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2132027	2132155	.	-	.	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	start_codon	2132153	2132155	.	-	0	transcript_id "Ledus.S3G029600.t1"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	transcript	2128630	2132155	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	stop_codon	2128627	2128629	.	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2128630	2128827	1	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2128630	2128827	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2128828	2128905	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2128906	2128986	1	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2128906	2128986	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2128987	2129112	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2129113	2129218	1	-	1	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2129113	2129218	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2129219	2129317	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2129318	2129610	1	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2129318	2129610	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2129611	2129704	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2129705	2129860	1	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2129705	2129860	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2129861	2129947	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2129948	2130058	1	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2129948	2130058	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2130059	2130143	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2130144	2130290	1	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2130144	2130290	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2130291	2130389	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2130390	2130845	0.46	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2130390	2130845	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2130846	2130957	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2130958	2131082	0.99	-	2	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2130958	2131082	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2131083	2131158	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2131159	2131234	0.78	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2131159	2131234	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2131235	2131331	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2131332	2131346	0.86	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2131332	2131346	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2131347	2131430	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2131431	2131502	0.9	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2131431	2131502	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2131503	2131612	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2131613	2131699	0.81	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2131613	2131699	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2131700	2131792	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2131793	2131927	1	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2131793	2131927	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	intron	2131928	2132026	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	CDS	2132027	2132155	0.9	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	exon	2132027	2132155	.	-	.	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
Ledus.S3	AUGUSTUS	start_codon	2132153	2132155	.	-	0	transcript_id "Ledus.S3G029600.t2"; gene_id "Ledus.S3G029600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12508.t1 is derived from g6129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12559590	12563889	.	-	.	Ledus.S4G166400
Ledus.S4	AUGUSTUS	transcript	12559590	12563889	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	stop_codon	12559587	12559589	.	-	0	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12559590	12559671	0.41	-	1	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12559590	12559671	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12559672	12559775	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12559776	12559859	0.71	-	1	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12559776	12559859	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12559860	12560042	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12560043	12560161	1	-	0	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12560043	12560161	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12560162	12560392	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12560393	12560502	1	-	2	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12560393	12560502	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12560503	12560590	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12560591	12560841	0.97	-	1	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12560591	12560841	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12560842	12561167	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12561168	12561197	0.42	-	1	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12561168	12561197	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12561198	12561291	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12561292	12561433	0.25	-	2	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12561292	12561433	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12561434	12561510	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12561511	12561677	1	-	1	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12561511	12561677	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12561678	12561776	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12561777	12561904	0.55	-	0	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12561777	12561904	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12561905	12562014	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12562015	12562170	1	-	0	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12562015	12562170	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12562171	12562278	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12562279	12562390	0.97	-	1	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12562279	12562390	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12562391	12562473	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12562474	12562583	1	-	0	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12562474	12562583	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12562584	12562669	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12562670	12562876	1	-	0	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12562670	12562876	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12562877	12563057	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12563058	12563306	1	-	0	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12563058	12563306	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	intron	12563307	12563409	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	CDS	12563410	12563889	0.99	-	0	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	exon	12563410	12563889	.	-	.	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
Ledus.S4	AUGUSTUS	start_codon	12563887	12563889	.	-	0	transcript_id "Ledus.S4G166400.t1"; gene_id "Ledus.S4G166400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12861.t1 is derived from g4434.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	63882	65647	.	-	.	Ledus.C10G000400
Ledus.C10	AUGUSTUS	transcript	63882	65647	.	-	.	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	stop_codon	63879	63881	.	-	0	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	CDS	63882	63970	1	-	2	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	exon	63882	63970	.	-	.	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	intron	63971	64247	.	-	.	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	CDS	64248	64527	1	-	0	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	exon	64248	64527	.	-	.	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	intron	64528	64668	.	-	.	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	CDS	64669	64848	1	-	0	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	exon	64669	64848	.	-	.	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	intron	64849	65094	.	-	.	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	CDS	65095	65353	1	-	1	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	exon	65095	65353	.	-	.	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	intron	65354	65627	.	-	.	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	CDS	65628	65647	0.63	-	0	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	exon	65628	65647	.	-	.	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
Ledus.C10	AUGUSTUS	start_codon	65645	65647	.	-	0	transcript_id "Ledus.C10G000400.t1"; gene_id "Ledus.C10G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9644.t1 is derived from g10674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8575011	8576900	.	-	.	Ledus.S3G112100
Ledus.S3	AUGUSTUS	transcript	8575011	8576900	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	stop_codon	8575008	8575010	.	-	0	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8575011	8575097	1	-	0	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8575011	8575097	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8575098	8575268	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8575269	8575431	1	-	1	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8575269	8575431	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8575432	8575549	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8575550	8575653	1	-	0	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8575550	8575653	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8575654	8575803	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8575804	8575947	1	-	0	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8575804	8575947	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8575948	8576242	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8576243	8576397	1	-	2	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8576243	8576397	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8576398	8576516	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8576517	8576712	0.99	-	0	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8576517	8576712	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8576713	8576825	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8576826	8576900	0.99	-	0	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8576826	8576900	.	-	.	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	start_codon	8576898	8576900	.	-	0	transcript_id "Ledus.S3G112100.t1"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	transcript	8575011	8576900	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	stop_codon	8575008	8575010	.	-	0	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8575011	8575097	1	-	0	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8575011	8575097	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8575098	8575268	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8575269	8575431	1	-	1	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8575269	8575431	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8575432	8575549	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8575550	8575653	1	-	0	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8575550	8575653	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8575654	8575803	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8575804	8575947	1	-	0	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8575804	8575947	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8575948	8576021	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8576022	8576068	0.99	-	2	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8576022	8576068	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8576069	8576247	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8576248	8576397	1	-	2	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8576248	8576397	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8576398	8576516	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8576517	8576712	0.98	-	0	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8576517	8576712	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	intron	8576713	8576825	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	CDS	8576826	8576900	0.98	-	0	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	exon	8576826	8576900	.	-	.	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
Ledus.S3	AUGUSTUS	start_codon	8576898	8576900	.	-	0	transcript_id "Ledus.S3G112100.t2"; gene_id "Ledus.S3G112100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12782.t1 is derived from g6404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14451332	14452844	.	+	.	Ledus.S4G193800
Ledus.S4	AUGUSTUS	transcript	14451332	14452844	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	start_codon	14451332	14451334	.	+	0	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	CDS	14451332	14451523	0.98	+	0	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	exon	14451332	14451523	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	intron	14451524	14451607	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	CDS	14451608	14451654	1	+	0	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	exon	14451608	14451654	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	intron	14451655	14451764	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	CDS	14451765	14451867	0.91	+	1	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	exon	14451765	14451867	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	intron	14451868	14451972	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	CDS	14451973	14452059	0.91	+	0	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	exon	14451973	14452059	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	intron	14452060	14452142	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	CDS	14452143	14452226	1	+	0	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	exon	14452143	14452226	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	intron	14452227	14452310	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	CDS	14452311	14452364	1	+	0	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	exon	14452311	14452364	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	intron	14452365	14452449	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	CDS	14452450	14452530	1	+	0	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	exon	14452450	14452530	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	intron	14452531	14452624	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	CDS	14452625	14452670	0.97	+	0	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	exon	14452625	14452670	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	intron	14452671	14452776	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	CDS	14452777	14452844	0.96	+	2	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	exon	14452777	14452844	.	+	.	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
Ledus.S4	AUGUSTUS	stop_codon	14452845	14452847	.	+	0	transcript_id "Ledus.S4G193800.t1"; gene_id "Ledus.S4G193800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7190.t1 is derived from g6721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2047615	2048401	.	+	.	Ledus.C7G025100
Ledus.C7	AUGUSTUS	transcript	2047615	2048401	.	+	.	transcript_id "Ledus.C7G025100.t1"; gene_id "Ledus.C7G025100"
Ledus.C7	AUGUSTUS	start_codon	2047615	2047617	.	+	0	transcript_id "Ledus.C7G025100.t1"; gene_id "Ledus.C7G025100"
Ledus.C7	AUGUSTUS	CDS	2047615	2047816	0.6	+	0	transcript_id "Ledus.C7G025100.t1"; gene_id "Ledus.C7G025100"
Ledus.C7	AUGUSTUS	exon	2047615	2047816	.	+	.	transcript_id "Ledus.C7G025100.t1"; gene_id "Ledus.C7G025100"
Ledus.C7	AUGUSTUS	intron	2047817	2047922	.	+	.	transcript_id "Ledus.C7G025100.t1"; gene_id "Ledus.C7G025100"
Ledus.C7	AUGUSTUS	CDS	2047923	2048401	0.6	+	2	transcript_id "Ledus.C7G025100.t1"; gene_id "Ledus.C7G025100"
Ledus.C7	AUGUSTUS	exon	2047923	2048401	.	+	.	transcript_id "Ledus.C7G025100.t1"; gene_id "Ledus.C7G025100"
Ledus.C7	AUGUSTUS	stop_codon	2048402	2048404	.	+	0	transcript_id "Ledus.C7G025100.t1"; gene_id "Ledus.C7G025100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7341.t1 is derived from g12012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1268283	1269879	.	+	.	Ledus.S5G011900
Ledus.S5	AUGUSTUS	transcript	1268283	1269879	.	+	.	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	start_codon	1268283	1268285	.	+	0	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	CDS	1268283	1268588	0.97	+	0	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	exon	1268283	1268588	.	+	.	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	intron	1268589	1268714	.	+	.	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	CDS	1268715	1268801	1	+	0	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	exon	1268715	1268801	.	+	.	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	intron	1268802	1268897	.	+	.	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	CDS	1268898	1268996	1	+	0	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	exon	1268898	1268996	.	+	.	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	intron	1268997	1269115	.	+	.	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	CDS	1269116	1269317	1	+	0	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	exon	1269116	1269317	.	+	.	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	intron	1269318	1269402	.	+	.	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	CDS	1269403	1269533	1	+	2	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	exon	1269403	1269533	.	+	.	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	intron	1269534	1269630	.	+	.	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	CDS	1269631	1269879	1	+	0	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	exon	1269631	1269879	.	+	.	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
Ledus.S5	AUGUSTUS	stop_codon	1269880	1269882	.	+	0	transcript_id "Ledus.S5G011900.t1"; gene_id "Ledus.S5G011900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4197.t1 is derived from g1633.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15326133	15335721	.	+	.	Ledus.S1G161800
Ledus.S1	AUGUSTUS	transcript	15326133	15335721	.	+	.	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	start_codon	15326133	15326135	.	+	0	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	CDS	15326133	15326159	0.2	+	0	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	exon	15326133	15326159	.	+	.	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	intron	15326160	15326767	.	+	.	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	CDS	15326768	15326841	1	+	0	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	exon	15326768	15326841	.	+	.	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	intron	15326842	15331541	.	+	.	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	CDS	15331542	15331650	1	+	1	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	exon	15331542	15331650	.	+	.	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	intron	15331651	15333367	.	+	.	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	CDS	15333368	15333667	0.63	+	0	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	exon	15333368	15333667	.	+	.	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	intron	15333668	15335526	.	+	.	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	CDS	15335527	15335721	0.01	+	0	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	exon	15335527	15335721	.	+	.	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
Ledus.S1	AUGUSTUS	stop_codon	15335722	15335724	.	+	0	transcript_id "Ledus.S1G161800.t1"; gene_id "Ledus.S1G161800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2282.t1 is derived from g9145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16911112	16917552	.	+	.	Ledus.S2G216400
Ledus.S2	AUGUSTUS	transcript	16911112	16917552	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	start_codon	16911112	16911114	.	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16911112	16911511	1	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16911112	16911511	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16911512	16911735	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16911736	16911833	0.78	+	2	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16911736	16911833	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16911834	16911945	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16911946	16912002	0.87	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16911946	16912002	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16912003	16912099	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16912100	16912194	1	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16912100	16912194	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16912195	16912341	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16912342	16912441	1	+	1	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16912342	16912441	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16912442	16912533	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16912534	16912592	1	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16912534	16912592	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16912593	16912764	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16912765	16912886	1	+	1	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16912765	16912886	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16912887	16912976	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16912977	16913106	1	+	2	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16912977	16913106	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16913107	16913203	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16913204	16913291	1	+	1	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16913204	16913291	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16913292	16913390	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16913391	16913460	1	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16913391	16913460	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16913461	16913545	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16913546	16913606	1	+	2	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16913546	16913606	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16913607	16913828	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16913829	16913904	1	+	1	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16913829	16913904	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16913905	16913997	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16913998	16914108	1	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16913998	16914108	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16914109	16914226	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16914227	16914322	0.92	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16914227	16914322	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16914323	16914423	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16914424	16914546	0.98	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16914424	16914546	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16914547	16914672	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16914673	16914870	1	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16914673	16914870	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16914871	16915001	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16915002	16915103	1	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16915002	16915103	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16915104	16915195	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16915196	16915260	1	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16915196	16915260	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16915261	16915368	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16915369	16915462	1	+	1	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16915369	16915462	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16915463	16915604	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16915605	16915762	1	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16915605	16915762	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16915763	16915879	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16915880	16915929	0.94	+	1	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16915880	16915929	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16915930	16916036	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16916037	16916158	0.84	+	2	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16916037	16916158	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16916159	16916262	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16916263	16916370	0.99	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16916263	16916370	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16916371	16916454	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16916455	16916547	1	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16916455	16916547	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16916548	16916647	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16916648	16916684	1	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16916648	16916684	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16916685	16916789	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16916790	16917043	0.89	+	2	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16916790	16917043	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16917044	16917158	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16917159	16917314	0.98	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16917159	16917314	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	intron	16917315	16917399	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	CDS	16917400	16917552	0.99	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	exon	16917400	16917552	.	+	.	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
Ledus.S2	AUGUSTUS	stop_codon	16917553	16917555	.	+	0	transcript_id "Ledus.S2G216400.t1"; gene_id "Ledus.S2G216400"
# This transcript jg8435.t2 is derived from g13107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8436.t1 is derived from g13108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11689012	11691619	.	-	.	Ledus.S5G121400
Ledus.S5	AUGUSTUS	transcript	11689012	11691619	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	stop_codon	11689009	11689011	.	-	0	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	CDS	11689012	11689062	0.74	-	0	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	exon	11689012	11689062	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	intron	11689063	11689161	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	CDS	11689162	11689199	1	-	2	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	exon	11689162	11689199	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	intron	11689200	11689332	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	CDS	11689333	11689408	0.98	-	0	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	exon	11689333	11689408	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	intron	11689409	11689510	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	CDS	11689511	11689615	0.98	-	0	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	exon	11689511	11689615	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	intron	11689616	11689736	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	CDS	11689737	11689789	1	-	2	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	exon	11689737	11689789	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	intron	11689790	11690069	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	CDS	11690070	11690157	1	-	0	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	exon	11690070	11690157	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	intron	11690158	11690241	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	CDS	11690242	11690745	1	-	0	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	exon	11690242	11690745	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	intron	11690746	11691030	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	CDS	11691031	11691289	0.66	-	1	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	exon	11691031	11691289	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	intron	11691290	11691503	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	CDS	11691504	11691619	0.62	-	0	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	exon	11691504	11691619	.	-	.	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
Ledus.S5	AUGUSTUS	start_codon	11691617	11691619	.	-	0	transcript_id "Ledus.S5G121400.t1"; gene_id "Ledus.S5G121400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8953.t1 is derived from g9983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3397877	3400660	.	+	.	Ledus.S3G043000
Ledus.S3	AUGUSTUS	transcript	3397877	3400660	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	start_codon	3397877	3397879	.	+	0	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	CDS	3397877	3398359	0.93	+	0	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	exon	3397877	3398359	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	intron	3398360	3398483	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	CDS	3398484	3398738	1	+	0	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	exon	3398484	3398738	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	intron	3398739	3398898	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	CDS	3398899	3398978	1	+	0	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	exon	3398899	3398978	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	intron	3398979	3399071	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	CDS	3399072	3399177	1	+	1	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	exon	3399072	3399177	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	intron	3399178	3399263	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	CDS	3399264	3399377	1	+	0	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	exon	3399264	3399377	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	intron	3399378	3399482	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	CDS	3399483	3399581	1	+	0	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	exon	3399483	3399581	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	intron	3399582	3399704	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	CDS	3399705	3399794	1	+	0	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	exon	3399705	3399794	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	intron	3399795	3399877	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	CDS	3399878	3399984	1	+	0	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	exon	3399878	3399984	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	intron	3399985	3400097	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	CDS	3400098	3400238	1	+	1	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	exon	3400098	3400238	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	intron	3400239	3400323	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	CDS	3400324	3400660	1	+	1	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	exon	3400324	3400660	.	+	.	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
Ledus.S3	AUGUSTUS	stop_codon	3400661	3400663	.	+	0	transcript_id "Ledus.S3G043000.t1"; gene_id "Ledus.S3G043000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7146.t1 is derived from g6677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1763084	1764821	.	-	.	Ledus.C7G020700
Ledus.C7	AUGUSTUS	transcript	1763084	1764821	.	-	.	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	stop_codon	1763081	1763083	.	-	0	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	CDS	1763084	1763503	1	-	0	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	exon	1763084	1763503	.	-	.	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	intron	1763504	1763599	.	-	.	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	CDS	1763600	1763729	0.98	-	1	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	exon	1763600	1763729	.	-	.	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	intron	1763730	1763810	.	-	.	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	CDS	1763811	1763911	0.91	-	0	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	exon	1763811	1763911	.	-	.	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	intron	1763912	1764013	.	-	.	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	CDS	1764014	1764130	0.9	-	0	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	exon	1764014	1764130	.	-	.	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	intron	1764131	1764208	.	-	.	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	CDS	1764209	1764306	1	-	2	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	exon	1764209	1764306	.	-	.	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	intron	1764307	1764391	.	-	.	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	CDS	1764392	1764821	1	-	0	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	exon	1764392	1764821	.	-	.	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
Ledus.C7	AUGUSTUS	start_codon	1764819	1764821	.	-	0	transcript_id "Ledus.C7G020700.t1"; gene_id "Ledus.C7G020700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11558.t1 is derived from g5176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5272220	5273787	.	-	.	Ledus.S4G071400
Ledus.S4	AUGUSTUS	transcript	5272220	5273787	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	stop_codon	5272217	5272219	.	-	0	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	CDS	5272220	5272369	1	-	0	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	exon	5272220	5272369	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	intron	5272370	5272456	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	CDS	5272457	5272569	1	-	2	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	exon	5272457	5272569	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	intron	5272570	5272633	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	CDS	5272634	5272700	1	-	0	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	exon	5272634	5272700	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	intron	5272701	5272780	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	CDS	5272781	5272843	1	-	0	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	exon	5272781	5272843	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	intron	5272844	5272921	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	CDS	5272922	5272987	1	-	0	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	exon	5272922	5272987	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	intron	5272988	5273069	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	CDS	5273070	5273150	1	-	0	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	exon	5273070	5273150	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	intron	5273151	5273224	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	CDS	5273225	5273580	0.98	-	2	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	exon	5273225	5273580	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	intron	5273581	5273726	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	CDS	5273727	5273787	1	-	0	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	exon	5273727	5273787	.	-	.	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
Ledus.S4	AUGUSTUS	start_codon	5273785	5273787	.	-	0	transcript_id "Ledus.S4G071400.t1"; gene_id "Ledus.S4G071400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4094.t1 is derived from g1530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14668151	14669637	.	+	.	Ledus.S1G151500
Ledus.S1	AUGUSTUS	transcript	14668151	14669637	.	+	.	transcript_id "Ledus.S1G151500.t1"; gene_id "Ledus.S1G151500"
Ledus.S1	AUGUSTUS	start_codon	14668151	14668153	.	+	0	transcript_id "Ledus.S1G151500.t1"; gene_id "Ledus.S1G151500"
Ledus.S1	AUGUSTUS	CDS	14668151	14668432	0.84	+	0	transcript_id "Ledus.S1G151500.t1"; gene_id "Ledus.S1G151500"
Ledus.S1	AUGUSTUS	exon	14668151	14668432	.	+	.	transcript_id "Ledus.S1G151500.t1"; gene_id "Ledus.S1G151500"
Ledus.S1	AUGUSTUS	intron	14668433	14668523	.	+	.	transcript_id "Ledus.S1G151500.t1"; gene_id "Ledus.S1G151500"
Ledus.S1	AUGUSTUS	CDS	14668524	14668849	1	+	0	transcript_id "Ledus.S1G151500.t1"; gene_id "Ledus.S1G151500"
Ledus.S1	AUGUSTUS	exon	14668524	14668849	.	+	.	transcript_id "Ledus.S1G151500.t1"; gene_id "Ledus.S1G151500"
Ledus.S1	AUGUSTUS	intron	14668850	14668937	.	+	.	transcript_id "Ledus.S1G151500.t1"; gene_id "Ledus.S1G151500"
Ledus.S1	AUGUSTUS	CDS	14668938	14669637	1	+	1	transcript_id "Ledus.S1G151500.t1"; gene_id "Ledus.S1G151500"
Ledus.S1	AUGUSTUS	exon	14668938	14669637	.	+	.	transcript_id "Ledus.S1G151500.t1"; gene_id "Ledus.S1G151500"
Ledus.S1	AUGUSTUS	stop_codon	14669638	14669640	.	+	0	transcript_id "Ledus.S1G151500.t1"; gene_id "Ledus.S1G151500"
# This transcript jg9300.t2 is derived from g10330.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9301.t1 is derived from g10331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5877171	5877629	.	-	.	Ledus.S3G077800
Ledus.S3	AUGUSTUS	transcript	5877171	5877629	.	-	.	transcript_id "Ledus.S3G077800.t1"; gene_id "Ledus.S3G077800"
Ledus.S3	AUGUSTUS	stop_codon	5877168	5877170	.	-	0	transcript_id "Ledus.S3G077800.t1"; gene_id "Ledus.S3G077800"
Ledus.S3	AUGUSTUS	CDS	5877171	5877629	0.86	-	0	transcript_id "Ledus.S3G077800.t1"; gene_id "Ledus.S3G077800"
Ledus.S3	AUGUSTUS	exon	5877171	5877629	.	-	.	transcript_id "Ledus.S3G077800.t1"; gene_id "Ledus.S3G077800"
Ledus.S3	AUGUSTUS	start_codon	5877627	5877629	.	-	0	transcript_id "Ledus.S3G077800.t1"; gene_id "Ledus.S3G077800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10310.t1 is derived from g11340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14185625	14186231	.	-	.	Ledus.S3G178700
Ledus.S3	AUGUSTUS	transcript	14185625	14186231	.	-	.	transcript_id "Ledus.S3G178700.t1"; gene_id "Ledus.S3G178700"
Ledus.S3	AUGUSTUS	stop_codon	14185622	14185624	.	-	0	transcript_id "Ledus.S3G178700.t1"; gene_id "Ledus.S3G178700"
Ledus.S3	AUGUSTUS	CDS	14185625	14185776	0.86	-	2	transcript_id "Ledus.S3G178700.t1"; gene_id "Ledus.S3G178700"
Ledus.S3	AUGUSTUS	exon	14185625	14185776	.	-	.	transcript_id "Ledus.S3G178700.t1"; gene_id "Ledus.S3G178700"
Ledus.S3	AUGUSTUS	intron	14185777	14185975	.	-	.	transcript_id "Ledus.S3G178700.t1"; gene_id "Ledus.S3G178700"
Ledus.S3	AUGUSTUS	CDS	14185976	14186231	0.6	-	0	transcript_id "Ledus.S3G178700.t1"; gene_id "Ledus.S3G178700"
Ledus.S3	AUGUSTUS	exon	14185976	14186231	.	-	.	transcript_id "Ledus.S3G178700.t1"; gene_id "Ledus.S3G178700"
Ledus.S3	AUGUSTUS	start_codon	14186229	14186231	.	-	0	transcript_id "Ledus.S3G178700.t1"; gene_id "Ledus.S3G178700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6838.t1 is derived from g4282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34568668	34569586	.	+	.	Ledus.S1G425900
Ledus.S1	AUGUSTUS	transcript	34568668	34569586	.	+	.	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	start_codon	34568668	34568670	.	+	0	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	CDS	34568668	34568691	0.92	+	0	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	exon	34568668	34568691	.	+	.	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	intron	34568692	34568834	.	+	.	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	CDS	34568835	34568930	1	+	0	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	exon	34568835	34568930	.	+	.	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	intron	34568931	34569028	.	+	.	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	CDS	34569029	34569132	1	+	0	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	exon	34569029	34569132	.	+	.	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	intron	34569133	34569269	.	+	.	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	CDS	34569270	34569406	0.8	+	1	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	exon	34569270	34569406	.	+	.	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	intron	34569407	34569521	.	+	.	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	CDS	34569522	34569586	0.99	+	2	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	exon	34569522	34569586	.	+	.	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
Ledus.S1	AUGUSTUS	stop_codon	34569587	34569589	.	+	0	transcript_id "Ledus.S1G425900.t1"; gene_id "Ledus.S1G425900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12918.t1 is derived from g4410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	328406	334093	.	+	.	Ledus.C9G002600
Ledus.C9	AUGUSTUS	transcript	328406	334093	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	start_codon	328406	328408	.	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	328406	328580	0.6	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	328406	328580	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	328581	328715	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	328716	328766	1	+	2	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	328716	328766	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	328767	328851	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	328852	328943	1	+	2	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	328852	328943	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	328944	329037	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	329038	329115	1	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	329038	329115	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	329116	329250	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	329251	329408	1	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	329251	329408	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	329409	329524	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	329525	329626	1	+	1	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	329525	329626	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	329627	329754	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	329755	329872	1	+	1	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	329755	329872	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	329873	329958	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	329959	330011	0.92	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	329959	330011	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	330012	330114	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	330115	330180	0.91	+	1	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	330115	330180	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	330181	330302	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	330303	330347	1	+	1	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	330303	330347	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	330348	330472	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	330473	330522	0.77	+	1	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	330473	330522	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	330523	330623	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	330624	330808	0.89	+	2	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	330624	330808	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	330809	330949	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	330950	331009	1	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	330950	331009	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	331010	331112	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	331113	331220	1	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	331113	331220	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	331221	331319	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	331320	331500	0.46	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	331320	331500	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	331501	331679	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	331680	332003	0.69	+	2	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	331680	332003	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	332004	332114	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	332115	332212	1	+	2	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	332115	332212	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	332213	332302	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	332303	332434	1	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	332303	332434	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	332435	332539	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	332540	332758	1	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	332540	332758	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	332759	332844	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	332845	333051	0.98	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	332845	333051	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	333052	333155	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	333156	333387	0.98	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	333156	333387	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	333388	333475	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	333476	333702	1	+	2	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	333476	333702	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	intron	333703	333790	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	CDS	333791	334093	0.98	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	exon	333791	334093	.	+	.	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
Ledus.C9	AUGUSTUS	stop_codon	334094	334096	.	+	0	transcript_id "Ledus.C9G002600.t1"; gene_id "Ledus.C9G002600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10679.t1 is derived from g11709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17053155	17055869	.	+	.	Ledus.S3G215600
Ledus.S3	AUGUSTUS	transcript	17053155	17055869	.	+	.	transcript_id "Ledus.S3G215600.t1"; gene_id "Ledus.S3G215600"
Ledus.S3	AUGUSTUS	start_codon	17053155	17053157	.	+	0	transcript_id "Ledus.S3G215600.t1"; gene_id "Ledus.S3G215600"
Ledus.S3	AUGUSTUS	CDS	17053155	17055611	0.65	+	0	transcript_id "Ledus.S3G215600.t1"; gene_id "Ledus.S3G215600"
Ledus.S3	AUGUSTUS	exon	17053155	17055611	.	+	.	transcript_id "Ledus.S3G215600.t1"; gene_id "Ledus.S3G215600"
Ledus.S3	AUGUSTUS	intron	17055612	17055701	.	+	.	transcript_id "Ledus.S3G215600.t1"; gene_id "Ledus.S3G215600"
Ledus.S3	AUGUSTUS	CDS	17055702	17055746	0.74	+	0	transcript_id "Ledus.S3G215600.t1"; gene_id "Ledus.S3G215600"
Ledus.S3	AUGUSTUS	exon	17055702	17055746	.	+	.	transcript_id "Ledus.S3G215600.t1"; gene_id "Ledus.S3G215600"
Ledus.S3	AUGUSTUS	intron	17055747	17055833	.	+	.	transcript_id "Ledus.S3G215600.t1"; gene_id "Ledus.S3G215600"
Ledus.S3	AUGUSTUS	CDS	17055834	17055869	0.95	+	0	transcript_id "Ledus.S3G215600.t1"; gene_id "Ledus.S3G215600"
Ledus.S3	AUGUSTUS	exon	17055834	17055869	.	+	.	transcript_id "Ledus.S3G215600.t1"; gene_id "Ledus.S3G215600"
Ledus.S3	AUGUSTUS	stop_codon	17055870	17055872	.	+	0	transcript_id "Ledus.S3G215600.t1"; gene_id "Ledus.S3G215600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10388.t1 is derived from g11418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14692509	14694605	.	-	.	Ledus.S3G186500
Ledus.S3	AUGUSTUS	transcript	14692509	14694605	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	stop_codon	14692506	14692508	.	-	0	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	CDS	14692509	14692670	0.68	-	0	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	exon	14692509	14692670	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	intron	14692671	14692759	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	CDS	14692760	14693017	0.99	-	0	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	exon	14692760	14693017	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	intron	14693018	14693128	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	CDS	14693129	14693336	1	-	1	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	exon	14693129	14693336	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	intron	14693337	14693426	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	CDS	14693427	14693530	1	-	0	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	exon	14693427	14693530	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	intron	14693531	14693631	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	CDS	14693632	14693815	1	-	1	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	exon	14693632	14693815	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	intron	14693816	14693905	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	CDS	14693906	14694018	0.99	-	0	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	exon	14693906	14694018	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	intron	14694019	14694098	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	CDS	14694099	14694284	0.85	-	0	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	exon	14694099	14694284	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	intron	14694285	14694362	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	CDS	14694363	14694605	0.99	-	0	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	exon	14694363	14694605	.	-	.	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
Ledus.S3	AUGUSTUS	start_codon	14694603	14694605	.	-	0	transcript_id "Ledus.S3G186500.t1"; gene_id "Ledus.S3G186500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4057.t1 is derived from g1493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14369886	14370888	.	+	.	Ledus.S1G147800
Ledus.S1	AUGUSTUS	transcript	14369886	14370888	.	+	.	transcript_id "Ledus.S1G147800.t1"; gene_id "Ledus.S1G147800"
Ledus.S1	AUGUSTUS	start_codon	14369886	14369888	.	+	0	transcript_id "Ledus.S1G147800.t1"; gene_id "Ledus.S1G147800"
Ledus.S1	AUGUSTUS	CDS	14369886	14370302	0.96	+	0	transcript_id "Ledus.S1G147800.t1"; gene_id "Ledus.S1G147800"
Ledus.S1	AUGUSTUS	exon	14369886	14370302	.	+	.	transcript_id "Ledus.S1G147800.t1"; gene_id "Ledus.S1G147800"
Ledus.S1	AUGUSTUS	intron	14370303	14370432	.	+	.	transcript_id "Ledus.S1G147800.t1"; gene_id "Ledus.S1G147800"
Ledus.S1	AUGUSTUS	CDS	14370433	14370888	0.99	+	0	transcript_id "Ledus.S1G147800.t1"; gene_id "Ledus.S1G147800"
Ledus.S1	AUGUSTUS	exon	14370433	14370888	.	+	.	transcript_id "Ledus.S1G147800.t1"; gene_id "Ledus.S1G147800"
Ledus.S1	AUGUSTUS	stop_codon	14370889	14370891	.	+	0	transcript_id "Ledus.S1G147800.t1"; gene_id "Ledus.S1G147800"
# This transcript jg3578.t2 is derived from g1014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3579.t1 is derived from g1015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9773619	9775237	.	-	.	Ledus.S1G100000
Ledus.S1	AUGUSTUS	transcript	9773619	9775237	.	-	.	transcript_id "Ledus.S1G100000.t1"; gene_id "Ledus.S1G100000"
Ledus.S1	AUGUSTUS	stop_codon	9773616	9773618	.	-	0	transcript_id "Ledus.S1G100000.t1"; gene_id "Ledus.S1G100000"
Ledus.S1	AUGUSTUS	CDS	9773619	9774640	0.97	-	2	transcript_id "Ledus.S1G100000.t1"; gene_id "Ledus.S1G100000"
Ledus.S1	AUGUSTUS	exon	9773619	9774640	.	-	.	transcript_id "Ledus.S1G100000.t1"; gene_id "Ledus.S1G100000"
Ledus.S1	AUGUSTUS	intron	9774641	9774722	.	-	.	transcript_id "Ledus.S1G100000.t1"; gene_id "Ledus.S1G100000"
Ledus.S1	AUGUSTUS	CDS	9774723	9774933	1	-	0	transcript_id "Ledus.S1G100000.t1"; gene_id "Ledus.S1G100000"
Ledus.S1	AUGUSTUS	exon	9774723	9774933	.	-	.	transcript_id "Ledus.S1G100000.t1"; gene_id "Ledus.S1G100000"
Ledus.S1	AUGUSTUS	intron	9774934	9775027	.	-	.	transcript_id "Ledus.S1G100000.t1"; gene_id "Ledus.S1G100000"
Ledus.S1	AUGUSTUS	CDS	9775028	9775237	0.45	-	0	transcript_id "Ledus.S1G100000.t1"; gene_id "Ledus.S1G100000"
Ledus.S1	AUGUSTUS	exon	9775028	9775237	.	-	.	transcript_id "Ledus.S1G100000.t1"; gene_id "Ledus.S1G100000"
Ledus.S1	AUGUSTUS	start_codon	9775235	9775237	.	-	0	transcript_id "Ledus.S1G100000.t1"; gene_id "Ledus.S1G100000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8730.t1 is derived from g9760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1662129	1666049	.	+	.	Ledus.S3G020700
Ledus.S3	AUGUSTUS	transcript	1662129	1666049	.	+	.	transcript_id "Ledus.S3G020700.t1"; gene_id "Ledus.S3G020700"
Ledus.S3	AUGUSTUS	start_codon	1662129	1662131	.	+	0	transcript_id "Ledus.S3G020700.t1"; gene_id "Ledus.S3G020700"
Ledus.S3	AUGUSTUS	CDS	1662129	1666049	0.94	+	0	transcript_id "Ledus.S3G020700.t1"; gene_id "Ledus.S3G020700"
Ledus.S3	AUGUSTUS	exon	1662129	1666049	.	+	.	transcript_id "Ledus.S3G020700.t1"; gene_id "Ledus.S3G020700"
Ledus.S3	AUGUSTUS	stop_codon	1666050	1666052	.	+	0	transcript_id "Ledus.S3G020700.t1"; gene_id "Ledus.S3G020700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg11741.t1 is derived from g5360.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6526100	6526949	.	+	.	Ledus.S4G089700
Ledus.S4	AUGUSTUS	transcript	6526311	6526949	.	+	.	transcript_id "Ledus.S4G089700.t1"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	start_codon	6526311	6526313	.	+	0	transcript_id "Ledus.S4G089700.t1"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	CDS	6526311	6526463	0.84	+	0	transcript_id "Ledus.S4G089700.t1"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	exon	6526311	6526463	.	+	.	transcript_id "Ledus.S4G089700.t1"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	intron	6526464	6526559	.	+	.	transcript_id "Ledus.S4G089700.t1"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	CDS	6526560	6526614	1	+	0	transcript_id "Ledus.S4G089700.t1"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	exon	6526560	6526614	.	+	.	transcript_id "Ledus.S4G089700.t1"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	intron	6526615	6526794	.	+	.	transcript_id "Ledus.S4G089700.t1"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	CDS	6526795	6526949	1	+	2	transcript_id "Ledus.S4G089700.t1"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	exon	6526795	6526949	.	+	.	transcript_id "Ledus.S4G089700.t1"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	stop_codon	6526950	6526952	.	+	0	transcript_id "Ledus.S4G089700.t1"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	transcript	6526311	6526830	.	+	.	transcript_id "Ledus.S4G089700.t2"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	start_codon	6526311	6526313	.	+	0	transcript_id "Ledus.S4G089700.t2"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	CDS	6526311	6526483	0.83	+	0	transcript_id "Ledus.S4G089700.t2"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	exon	6526311	6526483	.	+	.	transcript_id "Ledus.S4G089700.t2"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	intron	6526484	6526559	.	+	.	transcript_id "Ledus.S4G089700.t2"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	CDS	6526560	6526614	0.98	+	1	transcript_id "Ledus.S4G089700.t2"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	exon	6526560	6526614	.	+	.	transcript_id "Ledus.S4G089700.t2"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	intron	6526615	6526794	.	+	.	transcript_id "Ledus.S4G089700.t2"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	CDS	6526795	6526830	0.98	+	0	transcript_id "Ledus.S4G089700.t2"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	exon	6526795	6526830	.	+	.	transcript_id "Ledus.S4G089700.t2"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	stop_codon	6526831	6526833	.	+	0	transcript_id "Ledus.S4G089700.t2"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	transcript	6526100	6526949	.	+	.	transcript_id "Ledus.S4G089700.t3"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	start_codon	6526100	6526102	.	+	0	transcript_id "Ledus.S4G089700.t3"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	CDS	6526100	6526111	0.63	+	0	transcript_id "Ledus.S4G089700.t3"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	exon	6526100	6526111	.	+	.	transcript_id "Ledus.S4G089700.t3"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	intron	6526112	6526559	.	+	.	transcript_id "Ledus.S4G089700.t3"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	CDS	6526560	6526614	1	+	0	transcript_id "Ledus.S4G089700.t3"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	exon	6526560	6526614	.	+	.	transcript_id "Ledus.S4G089700.t3"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	intron	6526615	6526794	.	+	.	transcript_id "Ledus.S4G089700.t3"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	CDS	6526795	6526949	0.98	+	2	transcript_id "Ledus.S4G089700.t3"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	exon	6526795	6526949	.	+	.	transcript_id "Ledus.S4G089700.t3"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	stop_codon	6526950	6526952	.	+	0	transcript_id "Ledus.S4G089700.t3"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	transcript	6526311	6526949	.	+	.	transcript_id "Ledus.S4G089700.t4"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	start_codon	6526311	6526313	.	+	0	transcript_id "Ledus.S4G089700.t4"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	CDS	6526311	6526483	0.77	+	0	transcript_id "Ledus.S4G089700.t4"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	exon	6526311	6526483	.	+	.	transcript_id "Ledus.S4G089700.t4"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	intron	6526484	6526559	.	+	.	transcript_id "Ledus.S4G089700.t4"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	CDS	6526560	6526614	1	+	1	transcript_id "Ledus.S4G089700.t4"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	exon	6526560	6526614	.	+	.	transcript_id "Ledus.S4G089700.t4"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	intron	6526615	6526694	.	+	.	transcript_id "Ledus.S4G089700.t4"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	CDS	6526695	6526949	0.6	+	0	transcript_id "Ledus.S4G089700.t4"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	exon	6526695	6526949	.	+	.	transcript_id "Ledus.S4G089700.t4"; gene_id "Ledus.S4G089700"
Ledus.S4	AUGUSTUS	stop_codon	6526950	6526952	.	+	0	transcript_id "Ledus.S4G089700.t4"; gene_id "Ledus.S4G089700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5868.t1 is derived from g3310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27474701	27477812	.	-	.	Ledus.S1G328900
Ledus.S1	AUGUSTUS	transcript	27474701	27477812	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	stop_codon	27474698	27474700	.	-	0	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	CDS	27474701	27474847	1	-	0	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	exon	27474701	27474847	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	intron	27474848	27474928	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	CDS	27474929	27475213	1	-	0	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	exon	27474929	27475213	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	intron	27475214	27475297	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	CDS	27475298	27475887	1	-	2	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	exon	27475298	27475887	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	intron	27475888	27475967	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	CDS	27475968	27476513	1	-	2	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	exon	27475968	27476513	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	intron	27476514	27476602	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	CDS	27476603	27476918	1	-	0	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	exon	27476603	27476918	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	intron	27476919	27476997	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	CDS	27476998	27477308	0.79	-	2	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	exon	27476998	27477308	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	intron	27477309	27477643	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	CDS	27477644	27477812	0.77	-	0	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	exon	27477644	27477812	.	-	.	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
Ledus.S1	AUGUSTUS	start_codon	27477810	27477812	.	-	0	transcript_id "Ledus.S1G328900.t1"; gene_id "Ledus.S1G328900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9347.t1 is derived from g10377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6296093	6299736	.	+	.	Ledus.S3G082400
Ledus.S3	AUGUSTUS	transcript	6296093	6299736	.	+	.	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	start_codon	6296093	6296095	.	+	0	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	CDS	6296093	6296146	0.83	+	0	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	exon	6296093	6296146	.	+	.	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	intron	6296147	6296233	.	+	.	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	CDS	6296234	6296430	1	+	0	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	exon	6296234	6296430	.	+	.	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	intron	6296431	6296529	.	+	.	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	CDS	6296530	6298789	0.51	+	1	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	exon	6296530	6298789	.	+	.	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	intron	6298790	6298879	.	+	.	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	CDS	6298880	6298929	0.53	+	0	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	exon	6298880	6298929	.	+	.	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	intron	6298930	6299025	.	+	.	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	CDS	6299026	6299143	1	+	1	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	exon	6299026	6299143	.	+	.	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	intron	6299144	6299598	.	+	.	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	CDS	6299599	6299736	0.86	+	0	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	exon	6299599	6299736	.	+	.	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
Ledus.S3	AUGUSTUS	stop_codon	6299737	6299739	.	+	0	transcript_id "Ledus.S3G082400.t1"; gene_id "Ledus.S3G082400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4915.t1 is derived from g2353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20610102	20610941	.	-	.	Ledus.S1G233600
Ledus.S1	AUGUSTUS	transcript	20610102	20610941	.	-	.	transcript_id "Ledus.S1G233600.t1"; gene_id "Ledus.S1G233600"
Ledus.S1	AUGUSTUS	stop_codon	20610099	20610101	.	-	0	transcript_id "Ledus.S1G233600.t1"; gene_id "Ledus.S1G233600"
Ledus.S1	AUGUSTUS	CDS	20610102	20610941	0.92	-	0	transcript_id "Ledus.S1G233600.t1"; gene_id "Ledus.S1G233600"
Ledus.S1	AUGUSTUS	exon	20610102	20610941	.	-	.	transcript_id "Ledus.S1G233600.t1"; gene_id "Ledus.S1G233600"
Ledus.S1	AUGUSTUS	start_codon	20610939	20610941	.	-	0	transcript_id "Ledus.S1G233600.t1"; gene_id "Ledus.S1G233600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9361.t1 is derived from g10391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6362483	6364094	.	-	.	Ledus.S3G083800
Ledus.S3	AUGUSTUS	transcript	6362483	6364094	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	stop_codon	6362480	6362482	.	-	0	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	CDS	6362483	6362590	1	-	0	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	exon	6362483	6362590	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	intron	6362591	6362687	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	CDS	6362688	6362766	0.99	-	1	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	exon	6362688	6362766	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	intron	6362767	6362876	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	CDS	6362877	6362953	0.87	-	0	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	exon	6362877	6362953	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	intron	6362954	6363043	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	CDS	6363044	6363202	0.66	-	0	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	exon	6363044	6363202	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	intron	6363203	6363306	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	CDS	6363307	6363375	0.89	-	0	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	exon	6363307	6363375	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	intron	6363376	6363474	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	CDS	6363475	6363520	1	-	1	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	exon	6363475	6363520	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	intron	6363521	6363593	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	CDS	6363594	6363622	1	-	0	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	exon	6363594	6363622	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	intron	6363623	6363696	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	CDS	6363697	6363741	1	-	0	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	exon	6363697	6363741	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	intron	6363742	6363924	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	CDS	6363925	6363960	0.79	-	0	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	exon	6363925	6363960	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	intron	6363961	6364049	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	CDS	6364050	6364094	0.46	-	0	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	exon	6364050	6364094	.	-	.	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
Ledus.S3	AUGUSTUS	start_codon	6364092	6364094	.	-	0	transcript_id "Ledus.S3G083800.t1"; gene_id "Ledus.S3G083800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8506.t1 is derived from g13178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12337770	12338075	.	+	.	Ledus.S5G128400
Ledus.S5	AUGUSTUS	transcript	12337770	12338075	.	+	.	transcript_id "Ledus.S5G128400.t1"; gene_id "Ledus.S5G128400"
Ledus.S5	AUGUSTUS	start_codon	12337770	12337772	.	+	0	transcript_id "Ledus.S5G128400.t1"; gene_id "Ledus.S5G128400"
Ledus.S5	AUGUSTUS	CDS	12337770	12338075	0.56	+	0	transcript_id "Ledus.S5G128400.t1"; gene_id "Ledus.S5G128400"
Ledus.S5	AUGUSTUS	exon	12337770	12338075	.	+	.	transcript_id "Ledus.S5G128400.t1"; gene_id "Ledus.S5G128400"
Ledus.S5	AUGUSTUS	stop_codon	12338076	12338078	.	+	0	transcript_id "Ledus.S5G128400.t1"; gene_id "Ledus.S5G128400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8262.t1 is derived from g12933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10277580	10279463	.	-	.	Ledus.S5G104000
Ledus.S5	AUGUSTUS	transcript	10277580	10279463	.	-	.	transcript_id "Ledus.S5G104000.t1"; gene_id "Ledus.S5G104000"
Ledus.S5	AUGUSTUS	stop_codon	10277577	10277579	.	-	0	transcript_id "Ledus.S5G104000.t1"; gene_id "Ledus.S5G104000"
Ledus.S5	AUGUSTUS	CDS	10277580	10279463	1	-	0	transcript_id "Ledus.S5G104000.t1"; gene_id "Ledus.S5G104000"
Ledus.S5	AUGUSTUS	exon	10277580	10279463	.	-	.	transcript_id "Ledus.S5G104000.t1"; gene_id "Ledus.S5G104000"
Ledus.S5	AUGUSTUS	start_codon	10279461	10279463	.	-	0	transcript_id "Ledus.S5G104000.t1"; gene_id "Ledus.S5G104000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7814.t1 is derived from g12485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6982384	6983101	.	-	.	Ledus.S5G059200
Ledus.S5	AUGUSTUS	transcript	6982384	6983101	.	-	.	transcript_id "Ledus.S5G059200.t1"; gene_id "Ledus.S5G059200"
Ledus.S5	AUGUSTUS	stop_codon	6982381	6982383	.	-	0	transcript_id "Ledus.S5G059200.t1"; gene_id "Ledus.S5G059200"
Ledus.S5	AUGUSTUS	CDS	6982384	6982399	0.45	-	1	transcript_id "Ledus.S5G059200.t1"; gene_id "Ledus.S5G059200"
Ledus.S5	AUGUSTUS	exon	6982384	6982399	.	-	.	transcript_id "Ledus.S5G059200.t1"; gene_id "Ledus.S5G059200"
Ledus.S5	AUGUSTUS	intron	6982400	6982493	.	-	.	transcript_id "Ledus.S5G059200.t1"; gene_id "Ledus.S5G059200"
Ledus.S5	AUGUSTUS	CDS	6982494	6983101	0.28	-	0	transcript_id "Ledus.S5G059200.t1"; gene_id "Ledus.S5G059200"
Ledus.S5	AUGUSTUS	exon	6982494	6983101	.	-	.	transcript_id "Ledus.S5G059200.t1"; gene_id "Ledus.S5G059200"
Ledus.S5	AUGUSTUS	start_codon	6983099	6983101	.	-	0	transcript_id "Ledus.S5G059200.t1"; gene_id "Ledus.S5G059200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11856.t1 is derived from g5475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7337888	7338277	.	-	.	Ledus.S4G101200
Ledus.S4	AUGUSTUS	transcript	7337888	7338277	.	-	.	transcript_id "Ledus.S4G101200.t1"; gene_id "Ledus.S4G101200"
Ledus.S4	AUGUSTUS	stop_codon	7337885	7337887	.	-	0	transcript_id "Ledus.S4G101200.t1"; gene_id "Ledus.S4G101200"
Ledus.S4	AUGUSTUS	CDS	7337888	7338277	0.45	-	0	transcript_id "Ledus.S4G101200.t1"; gene_id "Ledus.S4G101200"
Ledus.S4	AUGUSTUS	exon	7337888	7338277	.	-	.	transcript_id "Ledus.S4G101200.t1"; gene_id "Ledus.S4G101200"
Ledus.S4	AUGUSTUS	start_codon	7338275	7338277	.	-	0	transcript_id "Ledus.S4G101200.t1"; gene_id "Ledus.S4G101200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9671.t1 is derived from g10701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8969811	8971020	.	-	.	Ledus.S3G114800
Ledus.S3	AUGUSTUS	transcript	8969811	8971020	.	-	.	transcript_id "Ledus.S3G114800.t1"; gene_id "Ledus.S3G114800"
Ledus.S3	AUGUSTUS	stop_codon	8969808	8969810	.	-	0	transcript_id "Ledus.S3G114800.t1"; gene_id "Ledus.S3G114800"
Ledus.S3	AUGUSTUS	CDS	8969811	8970346	1	-	2	transcript_id "Ledus.S3G114800.t1"; gene_id "Ledus.S3G114800"
Ledus.S3	AUGUSTUS	exon	8969811	8970346	.	-	.	transcript_id "Ledus.S3G114800.t1"; gene_id "Ledus.S3G114800"
Ledus.S3	AUGUSTUS	intron	8970347	8970456	.	-	.	transcript_id "Ledus.S3G114800.t1"; gene_id "Ledus.S3G114800"
Ledus.S3	AUGUSTUS	CDS	8970457	8970690	0.96	-	2	transcript_id "Ledus.S3G114800.t1"; gene_id "Ledus.S3G114800"
Ledus.S3	AUGUSTUS	exon	8970457	8970690	.	-	.	transcript_id "Ledus.S3G114800.t1"; gene_id "Ledus.S3G114800"
Ledus.S3	AUGUSTUS	intron	8970691	8970776	.	-	.	transcript_id "Ledus.S3G114800.t1"; gene_id "Ledus.S3G114800"
Ledus.S3	AUGUSTUS	CDS	8970777	8971020	0.6	-	0	transcript_id "Ledus.S3G114800.t1"; gene_id "Ledus.S3G114800"
Ledus.S3	AUGUSTUS	exon	8970777	8971020	.	-	.	transcript_id "Ledus.S3G114800.t1"; gene_id "Ledus.S3G114800"
Ledus.S3	AUGUSTUS	start_codon	8971018	8971020	.	-	0	transcript_id "Ledus.S3G114800.t1"; gene_id "Ledus.S3G114800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1547.t1 is derived from g8408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10876986	10881621	.	-	.	Ledus.S2G142900
Ledus.S2	AUGUSTUS	transcript	10876986	10881621	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	stop_codon	10876983	10876985	.	-	0	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	CDS	10876986	10877118	0.56	-	1	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	exon	10876986	10877118	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	intron	10877119	10877205	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	CDS	10877206	10877299	1	-	2	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	exon	10877206	10877299	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	intron	10877300	10877507	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	CDS	10877508	10877789	0.99	-	2	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	exon	10877508	10877789	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	intron	10877790	10877882	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	CDS	10877883	10878077	1	-	2	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	exon	10877883	10878077	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	intron	10878078	10878320	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	CDS	10878321	10878387	1	-	0	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	exon	10878321	10878387	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	intron	10878388	10878502	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	CDS	10878503	10879096	0.98	-	0	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	exon	10878503	10879096	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	intron	10879097	10879215	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	CDS	10879216	10879344	0.5	-	0	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	exon	10879216	10879344	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	intron	10879345	10879454	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	CDS	10879455	10879781	1	-	0	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	exon	10879455	10879781	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	intron	10879782	10879916	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	CDS	10879917	10880092	0.88	-	2	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	exon	10879917	10880092	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	intron	10880093	10880226	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	CDS	10880227	10880337	0.95	-	2	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	exon	10880227	10880337	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	intron	10880338	10880456	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	CDS	10880457	10880571	1	-	0	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	exon	10880457	10880571	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	intron	10880572	10881231	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	CDS	10881232	10881621	0.88	-	0	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	exon	10881232	10881621	.	-	.	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
Ledus.S2	AUGUSTUS	start_codon	10881619	10881621	.	-	0	transcript_id "Ledus.S2G142900.t1"; gene_id "Ledus.S2G142900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9268.t1 is derived from g10298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5715320	5716049	.	-	.	Ledus.S3G074500
Ledus.S3	AUGUSTUS	transcript	5715320	5716049	.	-	.	transcript_id "Ledus.S3G074500.t1"; gene_id "Ledus.S3G074500"
Ledus.S3	AUGUSTUS	stop_codon	5715317	5715319	.	-	0	transcript_id "Ledus.S3G074500.t1"; gene_id "Ledus.S3G074500"
Ledus.S3	AUGUSTUS	CDS	5715320	5715899	0.95	-	1	transcript_id "Ledus.S3G074500.t1"; gene_id "Ledus.S3G074500"
Ledus.S3	AUGUSTUS	exon	5715320	5715899	.	-	.	transcript_id "Ledus.S3G074500.t1"; gene_id "Ledus.S3G074500"
Ledus.S3	AUGUSTUS	intron	5715900	5715978	.	-	.	transcript_id "Ledus.S3G074500.t1"; gene_id "Ledus.S3G074500"
Ledus.S3	AUGUSTUS	CDS	5715979	5716049	0.68	-	0	transcript_id "Ledus.S3G074500.t1"; gene_id "Ledus.S3G074500"
Ledus.S3	AUGUSTUS	exon	5715979	5716049	.	-	.	transcript_id "Ledus.S3G074500.t1"; gene_id "Ledus.S3G074500"
Ledus.S3	AUGUSTUS	start_codon	5716047	5716049	.	-	0	transcript_id "Ledus.S3G074500.t1"; gene_id "Ledus.S3G074500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4756.t1 is derived from g2194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19626508	19626834	.	-	.	Ledus.S1G217700
Ledus.S1	AUGUSTUS	transcript	19626508	19626834	.	-	.	transcript_id "Ledus.S1G217700.t1"; gene_id "Ledus.S1G217700"
Ledus.S1	AUGUSTUS	stop_codon	19626505	19626507	.	-	0	transcript_id "Ledus.S1G217700.t1"; gene_id "Ledus.S1G217700"
Ledus.S1	AUGUSTUS	CDS	19626508	19626834	0.92	-	0	transcript_id "Ledus.S1G217700.t1"; gene_id "Ledus.S1G217700"
Ledus.S1	AUGUSTUS	exon	19626508	19626834	.	-	.	transcript_id "Ledus.S1G217700.t1"; gene_id "Ledus.S1G217700"
Ledus.S1	AUGUSTUS	start_codon	19626832	19626834	.	-	0	transcript_id "Ledus.S1G217700.t1"; gene_id "Ledus.S1G217700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7356.t1 is derived from g12027.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1432959	1437681	.	-	.	Ledus.S5G013400
Ledus.S5	AUGUSTUS	transcript	1432959	1437681	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	stop_codon	1432956	1432958	.	-	0	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1432959	1433231	1	-	0	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1432959	1433231	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1433232	1433319	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1433320	1433471	1	-	2	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1433320	1433471	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1433472	1433560	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1433561	1433669	1	-	0	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1433561	1433669	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1433670	1433762	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1433763	1433862	1	-	1	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1433763	1433862	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1433863	1433940	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1433941	1434005	1	-	0	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1433941	1434005	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1434006	1434152	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1434153	1434281	1	-	0	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1434153	1434281	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1434282	1434494	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1434495	1434587	1	-	0	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1434495	1434587	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1434588	1434867	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1434868	1434938	1	-	2	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1434868	1434938	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1434939	1435145	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1435146	1435205	0.99	-	2	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1435146	1435205	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1435206	1435530	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1435531	1435567	0.97	-	0	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1435531	1435567	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1435568	1435754	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1435755	1435800	0.98	-	1	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1435755	1435800	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1435801	1436018	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436019	1436095	1	-	0	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436019	1436095	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436096	1436237	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436238	1436335	1	-	2	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436238	1436335	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436336	1436523	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436524	1436635	1	-	0	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436524	1436635	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436636	1436732	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436733	1436781	1	-	1	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436733	1436781	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436782	1436866	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436867	1436967	1	-	0	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436867	1436967	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436968	1437049	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1437050	1437188	0.99	-	1	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1437050	1437188	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1437189	1437365	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1437366	1437383	0.99	-	1	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1437366	1437383	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1437384	1437520	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1437521	1437681	0.63	-	0	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1437521	1437681	.	-	.	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	start_codon	1437679	1437681	.	-	0	transcript_id "Ledus.S5G013400.t1"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	transcript	1432959	1437681	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	stop_codon	1432956	1432958	.	-	0	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1432959	1433231	1	-	0	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1432959	1433231	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1433232	1433319	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1433320	1433471	1	-	2	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1433320	1433471	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1433472	1433560	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1433561	1433669	1	-	0	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1433561	1433669	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1433670	1433762	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1433763	1433859	1	-	1	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1433763	1433859	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1433860	1433940	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1433941	1434005	1	-	0	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1433941	1434005	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1434006	1434152	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1434153	1434281	1	-	0	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1434153	1434281	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1434282	1434494	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1434495	1434587	1	-	0	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1434495	1434587	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1434588	1434867	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1434868	1434938	1	-	2	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1434868	1434938	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1434939	1435145	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1435146	1435205	0.99	-	2	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1435146	1435205	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1435206	1435530	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1435531	1435567	0.93	-	0	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1435531	1435567	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1435568	1435754	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1435755	1435800	0.96	-	1	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1435755	1435800	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1435801	1436018	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436019	1436095	1	-	0	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436019	1436095	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436096	1436237	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436238	1436335	1	-	2	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436238	1436335	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436336	1436523	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436524	1436635	1	-	0	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436524	1436635	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436636	1436732	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436733	1436781	1	-	1	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436733	1436781	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436782	1436866	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436867	1436967	1	-	0	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436867	1436967	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436968	1437049	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1437050	1437188	1	-	1	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1437050	1437188	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1437189	1437365	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1437366	1437383	0.96	-	1	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1437366	1437383	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1437384	1437520	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1437521	1437681	0.64	-	0	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1437521	1437681	.	-	.	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	start_codon	1437679	1437681	.	-	0	transcript_id "Ledus.S5G013400.t2"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	transcript	1432959	1437681	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	stop_codon	1432956	1432958	.	-	0	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1432959	1433231	1	-	0	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1432959	1433231	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1433232	1433319	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1433320	1433471	1	-	2	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1433320	1433471	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1433472	1433560	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1433561	1433669	1	-	0	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1433561	1433669	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1433670	1433762	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1433763	1433862	1	-	1	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1433763	1433862	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1433863	1433940	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1433941	1434005	1	-	0	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1433941	1434005	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1434006	1434152	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1434153	1434281	1	-	0	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1434153	1434281	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1434282	1434494	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1434495	1434587	1	-	0	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1434495	1434587	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1434588	1434867	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1434868	1434938	1	-	2	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1434868	1434938	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1434939	1435145	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1435146	1435205	1	-	2	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1435146	1435205	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1435206	1435754	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1435755	1435903	0.83	-	1	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1435755	1435903	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1435904	1436018	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436019	1436095	1	-	0	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436019	1436095	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436096	1436237	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436238	1436335	1	-	2	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436238	1436335	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436336	1436523	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436524	1436635	1	-	0	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436524	1436635	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436636	1436732	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436733	1436781	1	-	1	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436733	1436781	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436782	1436866	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1436867	1436967	1	-	0	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1436867	1436967	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1436968	1437049	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1437050	1437188	1	-	1	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1437050	1437188	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1437189	1437365	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1437366	1437383	0.96	-	1	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1437366	1437383	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	intron	1437384	1437520	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	CDS	1437521	1437681	0.7	-	0	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	exon	1437521	1437681	.	-	.	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
Ledus.S5	AUGUSTUS	start_codon	1437679	1437681	.	-	0	transcript_id "Ledus.S5G013400.t3"; gene_id "Ledus.S5G013400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9857.t1 is derived from g10887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10604498	10607312	.	+	.	Ledus.S3G133400
Ledus.S3	AUGUSTUS	transcript	10604498	10607312	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	start_codon	10604498	10604500	.	+	0	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	CDS	10604498	10604593	0.78	+	0	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	exon	10604498	10604593	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	intron	10604594	10604779	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	CDS	10604780	10604817	0.55	+	0	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	exon	10604780	10604817	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	intron	10604818	10605181	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	CDS	10605182	10605305	1	+	1	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	exon	10605182	10605305	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	intron	10605306	10605445	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	CDS	10605446	10605550	1	+	0	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	exon	10605446	10605550	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	intron	10605551	10606117	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	CDS	10606118	10606195	1	+	0	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	exon	10606118	10606195	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	intron	10606196	10606313	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	CDS	10606314	10606369	1	+	0	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	exon	10606314	10606369	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	intron	10606370	10606454	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	CDS	10606455	10606512	1	+	1	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	exon	10606455	10606512	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	intron	10606513	10606635	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	CDS	10606636	10606758	1	+	0	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	exon	10606636	10606758	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	intron	10606759	10606855	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	CDS	10606856	10606948	1	+	0	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	exon	10606856	10606948	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	intron	10606949	10607092	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	CDS	10607093	10607164	1	+	0	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	exon	10607093	10607164	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	intron	10607165	10607252	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	CDS	10607253	10607312	1	+	0	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	exon	10607253	10607312	.	+	.	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
Ledus.S3	AUGUSTUS	stop_codon	10607313	10607315	.	+	0	transcript_id "Ledus.S3G133400.t1"; gene_id "Ledus.S3G133400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1503.t1 is derived from g8364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10610966	10613029	.	-	.	Ledus.S2G138500
Ledus.S2	AUGUSTUS	transcript	10610966	10613029	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	stop_codon	10610963	10610965	.	-	0	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	CDS	10610966	10611054	0.97	-	2	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	exon	10610966	10611054	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	intron	10611055	10611314	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	CDS	10611315	10611408	0.75	-	0	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	exon	10611315	10611408	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	intron	10611409	10611487	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	CDS	10611488	10611613	1	-	0	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	exon	10611488	10611613	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	intron	10611614	10611695	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	CDS	10611696	10611842	1	-	0	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	exon	10611696	10611842	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	intron	10611843	10611915	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	CDS	10611916	10611988	1	-	1	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	exon	10611916	10611988	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	intron	10611989	10612061	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	CDS	10612062	10612206	0.99	-	2	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	exon	10612062	10612206	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	intron	10612207	10612317	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	CDS	10612318	10612529	0.99	-	1	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	exon	10612318	10612529	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	intron	10612530	10612609	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	CDS	10612610	10612702	1	-	1	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	exon	10612610	10612702	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	intron	10612703	10612775	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	CDS	10612776	10612846	1	-	0	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	exon	10612776	10612846	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	intron	10612847	10612945	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	CDS	10612946	10613029	1	-	0	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	exon	10612946	10613029	.	-	.	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
Ledus.S2	AUGUSTUS	start_codon	10613027	10613029	.	-	0	transcript_id "Ledus.S2G138500.t1"; gene_id "Ledus.S2G138500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8041.t1 is derived from g12712.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8756835	8758751	.	-	.	Ledus.S5G081900
Ledus.S5	AUGUSTUS	transcript	8756835	8758751	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	stop_codon	8756832	8756834	.	-	0	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	CDS	8756835	8756888	0.78	-	0	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	exon	8756835	8756888	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	intron	8756889	8757054	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	CDS	8757055	8757171	0.87	-	0	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	exon	8757055	8757171	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	intron	8757172	8757253	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	CDS	8757254	8757362	0.85	-	1	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	exon	8757254	8757362	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	intron	8757363	8757482	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	CDS	8757483	8757564	1	-	2	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	exon	8757483	8757564	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	intron	8757565	8757641	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	CDS	8757642	8757849	0.99	-	0	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	exon	8757642	8757849	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	intron	8757850	8758050	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	CDS	8758051	8758218	0.56	-	0	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	exon	8758051	8758218	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	intron	8758219	8758287	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	CDS	8758288	8758425	0.56	-	0	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	exon	8758288	8758425	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	intron	8758426	8758493	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	CDS	8758494	8758751	0.83	-	0	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	exon	8758494	8758751	.	-	.	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
Ledus.S5	AUGUSTUS	start_codon	8758749	8758751	.	-	0	transcript_id "Ledus.S5G081900.t1"; gene_id "Ledus.S5G081900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5624.t1 is derived from g3063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25428380	25429238	.	-	.	Ledus.S1G304500
Ledus.S1	AUGUSTUS	transcript	25428380	25429238	.	-	.	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	stop_codon	25428377	25428379	.	-	0	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	CDS	25428380	25428549	1	-	2	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	exon	25428380	25428549	.	-	.	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	intron	25428550	25428630	.	-	.	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	CDS	25428631	25428772	1	-	0	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	exon	25428631	25428772	.	-	.	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	intron	25428773	25428862	.	-	.	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	CDS	25428863	25428975	1	-	2	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	exon	25428863	25428975	.	-	.	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	intron	25428976	25429222	.	-	.	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	CDS	25429223	25429238	0.99	-	0	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	exon	25429223	25429238	.	-	.	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
Ledus.S1	AUGUSTUS	start_codon	25429236	25429238	.	-	0	transcript_id "Ledus.S1G304500.t1"; gene_id "Ledus.S1G304500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1389.t1 is derived from g8250.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9732012	9734970	.	-	.	Ledus.S2G127100
Ledus.S2	AUGUSTUS	transcript	9732012	9734970	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	stop_codon	9732009	9732011	.	-	0	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	CDS	9732012	9733310	0.99	-	0	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	exon	9732012	9733310	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	intron	9733311	9733402	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	CDS	9733403	9733733	0.33	-	1	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	exon	9733403	9733733	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	intron	9733734	9733816	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	CDS	9733817	9733967	0.45	-	2	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	exon	9733817	9733967	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	intron	9733968	9734049	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	CDS	9734050	9734105	1	-	1	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	exon	9734050	9734105	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	intron	9734106	9734234	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	CDS	9734235	9734278	0.99	-	0	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	exon	9734235	9734278	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	intron	9734279	9734705	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	CDS	9734706	9734778	0.79	-	1	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	exon	9734706	9734778	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	intron	9734779	9734857	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	CDS	9734858	9734970	0.63	-	0	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	exon	9734858	9734970	.	-	.	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
Ledus.S2	AUGUSTUS	start_codon	9734968	9734970	.	-	0	transcript_id "Ledus.S2G127100.t1"; gene_id "Ledus.S2G127100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9307.t1 is derived from g10337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5898876	5899112	.	-	.	Ledus.S3G078400
Ledus.S3	AUGUSTUS	transcript	5898876	5899112	.	-	.	transcript_id "Ledus.S3G078400.t1"; gene_id "Ledus.S3G078400"
Ledus.S3	AUGUSTUS	stop_codon	5898873	5898875	.	-	0	transcript_id "Ledus.S3G078400.t1"; gene_id "Ledus.S3G078400"
Ledus.S3	AUGUSTUS	CDS	5898876	5899112	0.83	-	0	transcript_id "Ledus.S3G078400.t1"; gene_id "Ledus.S3G078400"
Ledus.S3	AUGUSTUS	exon	5898876	5899112	.	-	.	transcript_id "Ledus.S3G078400.t1"; gene_id "Ledus.S3G078400"
Ledus.S3	AUGUSTUS	start_codon	5899110	5899112	.	-	0	transcript_id "Ledus.S3G078400.t1"; gene_id "Ledus.S3G078400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13019.t1 is derived from g6829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3200970	3201404	.	-	.	Ledus.S6G008100
Ledus.S6	AUGUSTUS	transcript	3200970	3201404	.	-	.	transcript_id "Ledus.S6G008100.t1"; gene_id "Ledus.S6G008100"
Ledus.S6	AUGUSTUS	stop_codon	3200967	3200969	.	-	0	transcript_id "Ledus.S6G008100.t1"; gene_id "Ledus.S6G008100"
Ledus.S6	AUGUSTUS	CDS	3200970	3201404	0.6	-	0	transcript_id "Ledus.S6G008100.t1"; gene_id "Ledus.S6G008100"
Ledus.S6	AUGUSTUS	exon	3200970	3201404	.	-	.	transcript_id "Ledus.S6G008100.t1"; gene_id "Ledus.S6G008100"
Ledus.S6	AUGUSTUS	start_codon	3201402	3201404	.	-	0	transcript_id "Ledus.S6G008100.t1"; gene_id "Ledus.S6G008100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1221.t1 is derived from g8082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8708263	8710041	.	-	.	Ledus.S2G110300
Ledus.S2	AUGUSTUS	transcript	8708263	8710041	.	-	.	transcript_id "Ledus.S2G110300.t1"; gene_id "Ledus.S2G110300"
Ledus.S2	AUGUSTUS	stop_codon	8708260	8708262	.	-	0	transcript_id "Ledus.S2G110300.t1"; gene_id "Ledus.S2G110300"
Ledus.S2	AUGUSTUS	CDS	8708263	8710041	1	-	0	transcript_id "Ledus.S2G110300.t1"; gene_id "Ledus.S2G110300"
Ledus.S2	AUGUSTUS	exon	8708263	8710041	.	-	.	transcript_id "Ledus.S2G110300.t1"; gene_id "Ledus.S2G110300"
Ledus.S2	AUGUSTUS	start_codon	8710039	8710041	.	-	0	transcript_id "Ledus.S2G110300.t1"; gene_id "Ledus.S2G110300"
# This transcript jg10986.t2 is derived from g4604.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10987.t1 is derived from g4605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1018444	1019155	.	-	.	Ledus.S4G014300
Ledus.S4	AUGUSTUS	transcript	1018444	1019155	.	-	.	transcript_id "Ledus.S4G014300.t1"; gene_id "Ledus.S4G014300"
Ledus.S4	AUGUSTUS	stop_codon	1018441	1018443	.	-	0	transcript_id "Ledus.S4G014300.t1"; gene_id "Ledus.S4G014300"
Ledus.S4	AUGUSTUS	CDS	1018444	1019027	1	-	2	transcript_id "Ledus.S4G014300.t1"; gene_id "Ledus.S4G014300"
Ledus.S4	AUGUSTUS	exon	1018444	1019027	.	-	.	transcript_id "Ledus.S4G014300.t1"; gene_id "Ledus.S4G014300"
Ledus.S4	AUGUSTUS	intron	1019028	1019100	.	-	.	transcript_id "Ledus.S4G014300.t1"; gene_id "Ledus.S4G014300"
Ledus.S4	AUGUSTUS	CDS	1019101	1019155	0.9	-	0	transcript_id "Ledus.S4G014300.t1"; gene_id "Ledus.S4G014300"
Ledus.S4	AUGUSTUS	exon	1019101	1019155	.	-	.	transcript_id "Ledus.S4G014300.t1"; gene_id "Ledus.S4G014300"
Ledus.S4	AUGUSTUS	start_codon	1019153	1019155	.	-	0	transcript_id "Ledus.S4G014300.t1"; gene_id "Ledus.S4G014300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8583.t1 is derived from g9613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	385304	387998	.	-	.	Ledus.S3G006000
Ledus.S3	AUGUSTUS	transcript	385304	387998	.	-	.	transcript_id "Ledus.S3G006000.t1"; gene_id "Ledus.S3G006000"
Ledus.S3	AUGUSTUS	stop_codon	385301	385303	.	-	0	transcript_id "Ledus.S3G006000.t1"; gene_id "Ledus.S3G006000"
Ledus.S3	AUGUSTUS	CDS	385304	386352	0.99	-	2	transcript_id "Ledus.S3G006000.t1"; gene_id "Ledus.S3G006000"
Ledus.S3	AUGUSTUS	exon	385304	386352	.	-	.	transcript_id "Ledus.S3G006000.t1"; gene_id "Ledus.S3G006000"
Ledus.S3	AUGUSTUS	intron	386353	387394	.	-	.	transcript_id "Ledus.S3G006000.t1"; gene_id "Ledus.S3G006000"
Ledus.S3	AUGUSTUS	CDS	387395	387998	0.99	-	0	transcript_id "Ledus.S3G006000.t1"; gene_id "Ledus.S3G006000"
Ledus.S3	AUGUSTUS	exon	387395	387998	.	-	.	transcript_id "Ledus.S3G006000.t1"; gene_id "Ledus.S3G006000"
Ledus.S3	AUGUSTUS	start_codon	387996	387998	.	-	0	transcript_id "Ledus.S3G006000.t1"; gene_id "Ledus.S3G006000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12793.t1 is derived from g6415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14582818	14583069	.	-	.	Ledus.S4G194900
Ledus.S4	AUGUSTUS	transcript	14582818	14583069	.	-	.	transcript_id "Ledus.S4G194900.t1"; gene_id "Ledus.S4G194900"
Ledus.S4	AUGUSTUS	stop_codon	14582815	14582817	.	-	0	transcript_id "Ledus.S4G194900.t1"; gene_id "Ledus.S4G194900"
Ledus.S4	AUGUSTUS	CDS	14582818	14583069	1	-	0	transcript_id "Ledus.S4G194900.t1"; gene_id "Ledus.S4G194900"
Ledus.S4	AUGUSTUS	exon	14582818	14583069	.	-	.	transcript_id "Ledus.S4G194900.t1"; gene_id "Ledus.S4G194900"
Ledus.S4	AUGUSTUS	start_codon	14583067	14583069	.	-	0	transcript_id "Ledus.S4G194900.t1"; gene_id "Ledus.S4G194900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8842.t1 is derived from g9872.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2233166	2234902	.	+	.	Ledus.S3G031900
Ledus.S3	AUGUSTUS	transcript	2233166	2234902	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	start_codon	2233166	2233168	.	+	0	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	CDS	2233166	2233179	0.59	+	0	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	exon	2233166	2233179	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	intron	2233180	2233257	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	CDS	2233258	2233339	1	+	1	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	exon	2233258	2233339	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	intron	2233340	2233731	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	CDS	2233732	2233812	1	+	0	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	exon	2233732	2233812	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	intron	2233813	2233911	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	CDS	2233912	2234025	1	+	0	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	exon	2233912	2234025	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	intron	2234026	2234093	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	CDS	2234094	2234195	1	+	0	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	exon	2234094	2234195	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	intron	2234196	2234278	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	CDS	2234279	2234337	1	+	0	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	exon	2234279	2234337	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	intron	2234338	2234437	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	CDS	2234438	2234540	1	+	1	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	exon	2234438	2234540	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	intron	2234541	2234633	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	CDS	2234634	2234699	1	+	0	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	exon	2234634	2234699	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	intron	2234700	2234812	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	CDS	2234813	2234902	0.99	+	0	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	exon	2234813	2234902	.	+	.	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
Ledus.S3	AUGUSTUS	stop_codon	2234903	2234905	.	+	0	transcript_id "Ledus.S3G031900.t1"; gene_id "Ledus.S3G031900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11481.t1 is derived from g5099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4831762	4832007	.	+	.	Ledus.S4G063700
Ledus.S4	AUGUSTUS	transcript	4831762	4832007	.	+	.	transcript_id "Ledus.S4G063700.t1"; gene_id "Ledus.S4G063700"
Ledus.S4	AUGUSTUS	start_codon	4831762	4831764	.	+	0	transcript_id "Ledus.S4G063700.t1"; gene_id "Ledus.S4G063700"
Ledus.S4	AUGUSTUS	CDS	4831762	4832007	1	+	0	transcript_id "Ledus.S4G063700.t1"; gene_id "Ledus.S4G063700"
Ledus.S4	AUGUSTUS	exon	4831762	4832007	.	+	.	transcript_id "Ledus.S4G063700.t1"; gene_id "Ledus.S4G063700"
Ledus.S4	AUGUSTUS	stop_codon	4832008	4832010	.	+	0	transcript_id "Ledus.S4G063700.t1"; gene_id "Ledus.S4G063700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3021.t1 is derived from g456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5367228	5370006	.	+	.	Ledus.S1G044200
Ledus.S1	AUGUSTUS	transcript	5367228	5370006	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	start_codon	5367228	5367230	.	+	0	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	CDS	5367228	5367406	0.92	+	0	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	exon	5367228	5367406	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	intron	5367407	5367643	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	CDS	5367644	5367652	0.92	+	1	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	exon	5367644	5367652	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	intron	5367653	5367734	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	CDS	5367735	5367801	0.89	+	1	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	exon	5367735	5367801	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	intron	5367802	5368290	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	CDS	5368291	5368658	1	+	0	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	exon	5368291	5368658	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	intron	5368659	5368841	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	CDS	5368842	5369048	1	+	1	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	exon	5368842	5369048	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	intron	5369049	5369168	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	CDS	5369169	5369252	1	+	1	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	exon	5369169	5369252	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	intron	5369253	5369350	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	CDS	5369351	5369432	1	+	1	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	exon	5369351	5369432	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	intron	5369433	5369517	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	CDS	5369518	5370006	0.9	+	0	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	exon	5369518	5370006	.	+	.	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
Ledus.S1	AUGUSTUS	stop_codon	5370007	5370009	.	+	0	transcript_id "Ledus.S1G044200.t1"; gene_id "Ledus.S1G044200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12690.t1 is derived from g6312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13888362	13889037	.	-	.	Ledus.S4G184600
Ledus.S4	AUGUSTUS	transcript	13888362	13889037	.	-	.	transcript_id "Ledus.S4G184600.t1"; gene_id "Ledus.S4G184600"
Ledus.S4	AUGUSTUS	stop_codon	13888359	13888361	.	-	0	transcript_id "Ledus.S4G184600.t1"; gene_id "Ledus.S4G184600"
Ledus.S4	AUGUSTUS	CDS	13888362	13888778	1	-	0	transcript_id "Ledus.S4G184600.t1"; gene_id "Ledus.S4G184600"
Ledus.S4	AUGUSTUS	exon	13888362	13888778	.	-	.	transcript_id "Ledus.S4G184600.t1"; gene_id "Ledus.S4G184600"
Ledus.S4	AUGUSTUS	intron	13888779	13888908	.	-	.	transcript_id "Ledus.S4G184600.t1"; gene_id "Ledus.S4G184600"
Ledus.S4	AUGUSTUS	CDS	13888909	13889037	1	-	0	transcript_id "Ledus.S4G184600.t1"; gene_id "Ledus.S4G184600"
Ledus.S4	AUGUSTUS	exon	13888909	13889037	.	-	.	transcript_id "Ledus.S4G184600.t1"; gene_id "Ledus.S4G184600"
Ledus.S4	AUGUSTUS	start_codon	13889035	13889037	.	-	0	transcript_id "Ledus.S4G184600.t1"; gene_id "Ledus.S4G184600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6407.t1 is derived from g3850.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31108801	31109576	.	+	.	Ledus.S1G382800
Ledus.S1	AUGUSTUS	transcript	31108801	31109576	.	+	.	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	start_codon	31108801	31108803	.	+	0	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	CDS	31108801	31108972	0.74	+	0	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	exon	31108801	31108972	.	+	.	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	intron	31108973	31109167	.	+	.	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	CDS	31109168	31109250	0.88	+	2	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	exon	31109168	31109250	.	+	.	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	intron	31109251	31109359	.	+	.	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	CDS	31109360	31109415	0.87	+	0	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	exon	31109360	31109415	.	+	.	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	intron	31109416	31109500	.	+	.	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	CDS	31109501	31109576	0.68	+	1	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	exon	31109501	31109576	.	+	.	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
Ledus.S1	AUGUSTUS	stop_codon	31109577	31109579	.	+	0	transcript_id "Ledus.S1G382800.t1"; gene_id "Ledus.S1G382800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11774.t1 is derived from g5393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6708142	6708432	.	+	.	Ledus.S4G093000
Ledus.S4	AUGUSTUS	transcript	6708142	6708432	.	+	.	transcript_id "Ledus.S4G093000.t1"; gene_id "Ledus.S4G093000"
Ledus.S4	AUGUSTUS	start_codon	6708142	6708144	.	+	0	transcript_id "Ledus.S4G093000.t1"; gene_id "Ledus.S4G093000"
Ledus.S4	AUGUSTUS	CDS	6708142	6708166	0.43	+	0	transcript_id "Ledus.S4G093000.t1"; gene_id "Ledus.S4G093000"
Ledus.S4	AUGUSTUS	exon	6708142	6708166	.	+	.	transcript_id "Ledus.S4G093000.t1"; gene_id "Ledus.S4G093000"
Ledus.S4	AUGUSTUS	intron	6708167	6708244	.	+	.	transcript_id "Ledus.S4G093000.t1"; gene_id "Ledus.S4G093000"
Ledus.S4	AUGUSTUS	CDS	6708245	6708432	0.38	+	2	transcript_id "Ledus.S4G093000.t1"; gene_id "Ledus.S4G093000"
Ledus.S4	AUGUSTUS	exon	6708245	6708432	.	+	.	transcript_id "Ledus.S4G093000.t1"; gene_id "Ledus.S4G093000"
Ledus.S4	AUGUSTUS	stop_codon	6708433	6708435	.	+	0	transcript_id "Ledus.S4G093000.t1"; gene_id "Ledus.S4G093000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1157.t1 is derived from g8018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7981012	7981542	.	-	.	Ledus.S2G103900
Ledus.S2	AUGUSTUS	transcript	7981012	7981542	.	-	.	transcript_id "Ledus.S2G103900.t1"; gene_id "Ledus.S2G103900"
Ledus.S2	AUGUSTUS	stop_codon	7981009	7981011	.	-	0	transcript_id "Ledus.S2G103900.t1"; gene_id "Ledus.S2G103900"
Ledus.S2	AUGUSTUS	CDS	7981012	7981119	0.86	-	0	transcript_id "Ledus.S2G103900.t1"; gene_id "Ledus.S2G103900"
Ledus.S2	AUGUSTUS	exon	7981012	7981119	.	-	.	transcript_id "Ledus.S2G103900.t1"; gene_id "Ledus.S2G103900"
Ledus.S2	AUGUSTUS	intron	7981120	7981250	.	-	.	transcript_id "Ledus.S2G103900.t1"; gene_id "Ledus.S2G103900"
Ledus.S2	AUGUSTUS	CDS	7981251	7981299	0.37	-	1	transcript_id "Ledus.S2G103900.t1"; gene_id "Ledus.S2G103900"
Ledus.S2	AUGUSTUS	exon	7981251	7981299	.	-	.	transcript_id "Ledus.S2G103900.t1"; gene_id "Ledus.S2G103900"
Ledus.S2	AUGUSTUS	intron	7981300	7981375	.	-	.	transcript_id "Ledus.S2G103900.t1"; gene_id "Ledus.S2G103900"
Ledus.S2	AUGUSTUS	CDS	7981376	7981542	0.79	-	0	transcript_id "Ledus.S2G103900.t1"; gene_id "Ledus.S2G103900"
Ledus.S2	AUGUSTUS	exon	7981376	7981542	.	-	.	transcript_id "Ledus.S2G103900.t1"; gene_id "Ledus.S2G103900"
Ledus.S2	AUGUSTUS	start_codon	7981540	7981542	.	-	0	transcript_id "Ledus.S2G103900.t1"; gene_id "Ledus.S2G103900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11345.t1 is derived from g4963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3706407	3709833	.	-	.	Ledus.S4G050100
Ledus.S4	AUGUSTUS	transcript	3706407	3709833	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	stop_codon	3706404	3706406	.	-	0	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	CDS	3706407	3706526	1	-	0	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	exon	3706407	3706526	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	intron	3706527	3706685	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	CDS	3706686	3706868	1	-	0	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	exon	3706686	3706868	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	intron	3706869	3707036	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	CDS	3707037	3707136	1	-	1	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	exon	3707037	3707136	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	intron	3707137	3707244	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	CDS	3707245	3707342	0.99	-	0	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	exon	3707245	3707342	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	intron	3707343	3707480	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	CDS	3707481	3707543	0.96	-	0	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	exon	3707481	3707543	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	intron	3707544	3707749	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	CDS	3707750	3707908	0.96	-	0	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	exon	3707750	3707908	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	intron	3707909	3708010	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	CDS	3708011	3708190	0.86	-	0	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	exon	3708011	3708190	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	intron	3708191	3708292	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	CDS	3708293	3708493	0.99	-	0	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	exon	3708293	3708493	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	intron	3708494	3708830	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	CDS	3708831	3708971	1	-	0	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	exon	3708831	3708971	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	intron	3708972	3709109	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	CDS	3709110	3709241	1	-	0	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	exon	3709110	3709241	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	intron	3709242	3709650	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	CDS	3709651	3709833	0.51	-	0	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	exon	3709651	3709833	.	-	.	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
Ledus.S4	AUGUSTUS	start_codon	3709831	3709833	.	-	0	transcript_id "Ledus.S4G050100.t1"; gene_id "Ledus.S4G050100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4164.t1 is derived from g1600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15082631	15085734	.	-	.	Ledus.S1G158500
Ledus.S1	AUGUSTUS	transcript	15082631	15085734	.	-	.	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	stop_codon	15082628	15082630	.	-	0	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	CDS	15082631	15082871	0.73	-	1	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	exon	15082631	15082871	.	-	.	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	intron	15082872	15082971	.	-	.	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	CDS	15082972	15085061	0.74	-	0	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	exon	15082972	15085061	.	-	.	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	intron	15085062	15085153	.	-	.	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	CDS	15085154	15085311	1	-	2	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	exon	15085154	15085311	.	-	.	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	intron	15085312	15085445	.	-	.	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	CDS	15085446	15085456	1	-	1	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	exon	15085446	15085456	.	-	.	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	intron	15085457	15085547	.	-	.	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	CDS	15085548	15085621	1	-	0	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	exon	15085548	15085621	.	-	.	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	intron	15085622	15085713	.	-	.	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	CDS	15085714	15085734	0.58	-	0	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	exon	15085714	15085734	.	-	.	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
Ledus.S1	AUGUSTUS	start_codon	15085732	15085734	.	-	0	transcript_id "Ledus.S1G158500.t1"; gene_id "Ledus.S1G158500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1374.t1 is derived from g8235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9587269	9589525	.	+	.	Ledus.S2G125600
Ledus.S2	AUGUSTUS	transcript	9587269	9589525	.	+	.	transcript_id "Ledus.S2G125600.t1"; gene_id "Ledus.S2G125600"
Ledus.S2	AUGUSTUS	start_codon	9587269	9587271	.	+	0	transcript_id "Ledus.S2G125600.t1"; gene_id "Ledus.S2G125600"
Ledus.S2	AUGUSTUS	CDS	9587269	9587315	1	+	0	transcript_id "Ledus.S2G125600.t1"; gene_id "Ledus.S2G125600"
Ledus.S2	AUGUSTUS	exon	9587269	9587315	.	+	.	transcript_id "Ledus.S2G125600.t1"; gene_id "Ledus.S2G125600"
Ledus.S2	AUGUSTUS	intron	9587316	9589413	.	+	.	transcript_id "Ledus.S2G125600.t1"; gene_id "Ledus.S2G125600"
Ledus.S2	AUGUSTUS	CDS	9589414	9589525	0.51	+	1	transcript_id "Ledus.S2G125600.t1"; gene_id "Ledus.S2G125600"
Ledus.S2	AUGUSTUS	exon	9589414	9589525	.	+	.	transcript_id "Ledus.S2G125600.t1"; gene_id "Ledus.S2G125600"
Ledus.S2	AUGUSTUS	stop_codon	9589526	9589528	.	+	0	transcript_id "Ledus.S2G125600.t1"; gene_id "Ledus.S2G125600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4495.t1 is derived from g1931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17365797	17366108	.	-	.	Ledus.S1G191600
Ledus.S1	AUGUSTUS	transcript	17365797	17366108	.	-	.	transcript_id "Ledus.S1G191600.t1"; gene_id "Ledus.S1G191600"
Ledus.S1	AUGUSTUS	stop_codon	17365794	17365796	.	-	0	transcript_id "Ledus.S1G191600.t1"; gene_id "Ledus.S1G191600"
Ledus.S1	AUGUSTUS	CDS	17365797	17366108	0.89	-	0	transcript_id "Ledus.S1G191600.t1"; gene_id "Ledus.S1G191600"
Ledus.S1	AUGUSTUS	exon	17365797	17366108	.	-	.	transcript_id "Ledus.S1G191600.t1"; gene_id "Ledus.S1G191600"
Ledus.S1	AUGUSTUS	start_codon	17366106	17366108	.	-	0	transcript_id "Ledus.S1G191600.t1"; gene_id "Ledus.S1G191600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5365.t1 is derived from g2804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23710981	23716406	.	+	.	Ledus.S1G278600
Ledus.S1	AUGUSTUS	transcript	23710981	23716406	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	start_codon	23710981	23710983	.	+	0	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23710981	23711106	1	+	0	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23710981	23711106	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23711107	23711305	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23711306	23711407	1	+	0	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23711306	23711407	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23711408	23711513	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23711514	23711696	0.88	+	0	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23711514	23711696	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23711697	23711788	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23711789	23712058	0.99	+	0	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23711789	23712058	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23712059	23712164	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23712165	23712267	1	+	0	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23712165	23712267	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23712268	23712368	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23712369	23712844	0.98	+	2	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23712369	23712844	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23712845	23712939	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23712940	23713030	0.41	+	0	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23712940	23713030	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23713031	23713125	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23713126	23713170	0.38	+	2	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23713126	23713170	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23713171	23713255	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23713256	23713302	0.97	+	2	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23713256	23713302	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23713303	23713724	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23713725	23713773	0.97	+	0	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23713725	23713773	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23713774	23713857	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23713858	23713898	0.99	+	2	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23713858	23713898	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23713899	23713978	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23713979	23713986	0.52	+	0	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23713979	23713986	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23713987	23714066	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23714067	23714240	1	+	1	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23714067	23714240	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23714241	23714328	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23714329	23714538	1	+	1	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23714329	23714538	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23714539	23714614	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23714615	23714797	0.98	+	1	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23714615	23714797	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23714798	23714898	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23714899	23715245	0.93	+	1	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23714899	23715245	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23715246	23715650	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23715651	23715794	0.94	+	2	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23715651	23715794	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	intron	23715795	23715879	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	CDS	23715880	23716406	1	+	2	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	exon	23715880	23716406	.	+	.	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
Ledus.S1	AUGUSTUS	stop_codon	23716407	23716409	.	+	0	transcript_id "Ledus.S1G278600.t1"; gene_id "Ledus.S1G278600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9867.t1 is derived from g10897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10696518	10696862	.	-	.	Ledus.S3G134400
Ledus.S3	AUGUSTUS	transcript	10696518	10696862	.	-	.	transcript_id "Ledus.S3G134400.t1"; gene_id "Ledus.S3G134400"
Ledus.S3	AUGUSTUS	stop_codon	10696515	10696517	.	-	0	transcript_id "Ledus.S3G134400.t1"; gene_id "Ledus.S3G134400"
Ledus.S3	AUGUSTUS	CDS	10696518	10696862	1	-	0	transcript_id "Ledus.S3G134400.t1"; gene_id "Ledus.S3G134400"
Ledus.S3	AUGUSTUS	exon	10696518	10696862	.	-	.	transcript_id "Ledus.S3G134400.t1"; gene_id "Ledus.S3G134400"
Ledus.S3	AUGUSTUS	start_codon	10696860	10696862	.	-	0	transcript_id "Ledus.S3G134400.t1"; gene_id "Ledus.S3G134400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6144.t1 is derived from g3587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29254631	29257964	.	+	.	Ledus.S1G356500
Ledus.S1	AUGUSTUS	transcript	29254631	29257964	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	start_codon	29254631	29254633	.	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29254631	29254870	0.99	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29254631	29254870	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29254871	29254983	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29254984	29255109	1	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29254984	29255109	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29255110	29255289	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29255290	29255427	1	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29255290	29255427	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29255428	29255536	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29255537	29255632	0.99	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29255537	29255632	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29255633	29255721	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29255722	29255964	1	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29255722	29255964	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29255965	29256052	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29256053	29256287	1	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29256053	29256287	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29256288	29256412	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29256413	29256582	1	+	2	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29256413	29256582	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29256583	29256695	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29256696	29256773	1	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29256696	29256773	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29256774	29256900	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29256901	29256972	1	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29256901	29256972	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29256973	29257160	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29257161	29257265	1	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29257161	29257265	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29257266	29257349	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29257350	29257442	1	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29257350	29257442	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29257443	29257527	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29257528	29257620	1	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29257528	29257620	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29257621	29257731	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29257732	29257858	1	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29257732	29257858	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	intron	29257859	29257953	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	CDS	29257954	29257964	1	+	2	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	exon	29257954	29257964	.	+	.	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
Ledus.S1	AUGUSTUS	stop_codon	29257965	29257967	.	+	0	transcript_id "Ledus.S1G356500.t1"; gene_id "Ledus.S1G356500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8622.t1 is derived from g9652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	751027	751293	.	+	.	Ledus.S3G009900
Ledus.S3	AUGUSTUS	transcript	751027	751293	.	+	.	transcript_id "Ledus.S3G009900.t1"; gene_id "Ledus.S3G009900"
Ledus.S3	AUGUSTUS	start_codon	751027	751029	.	+	0	transcript_id "Ledus.S3G009900.t1"; gene_id "Ledus.S3G009900"
Ledus.S3	AUGUSTUS	CDS	751027	751293	0.72	+	0	transcript_id "Ledus.S3G009900.t1"; gene_id "Ledus.S3G009900"
Ledus.S3	AUGUSTUS	exon	751027	751293	.	+	.	transcript_id "Ledus.S3G009900.t1"; gene_id "Ledus.S3G009900"
Ledus.S3	AUGUSTUS	stop_codon	751294	751296	.	+	0	transcript_id "Ledus.S3G009900.t1"; gene_id "Ledus.S3G009900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6400.t1 is derived from g3843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31046007	31046447	.	-	.	Ledus.S1G382100
Ledus.S1	AUGUSTUS	transcript	31046007	31046447	.	-	.	transcript_id "Ledus.S1G382100.t1"; gene_id "Ledus.S1G382100"
Ledus.S1	AUGUSTUS	stop_codon	31046004	31046006	.	-	0	transcript_id "Ledus.S1G382100.t1"; gene_id "Ledus.S1G382100"
Ledus.S1	AUGUSTUS	CDS	31046007	31046141	0.87	-	0	transcript_id "Ledus.S1G382100.t1"; gene_id "Ledus.S1G382100"
Ledus.S1	AUGUSTUS	exon	31046007	31046141	.	-	.	transcript_id "Ledus.S1G382100.t1"; gene_id "Ledus.S1G382100"
Ledus.S1	AUGUSTUS	intron	31046142	31046215	.	-	.	transcript_id "Ledus.S1G382100.t1"; gene_id "Ledus.S1G382100"
Ledus.S1	AUGUSTUS	CDS	31046216	31046320	0.9	-	0	transcript_id "Ledus.S1G382100.t1"; gene_id "Ledus.S1G382100"
Ledus.S1	AUGUSTUS	exon	31046216	31046320	.	-	.	transcript_id "Ledus.S1G382100.t1"; gene_id "Ledus.S1G382100"
Ledus.S1	AUGUSTUS	intron	31046321	31046399	.	-	.	transcript_id "Ledus.S1G382100.t1"; gene_id "Ledus.S1G382100"
Ledus.S1	AUGUSTUS	CDS	31046400	31046447	0.75	-	0	transcript_id "Ledus.S1G382100.t1"; gene_id "Ledus.S1G382100"
Ledus.S1	AUGUSTUS	exon	31046400	31046447	.	-	.	transcript_id "Ledus.S1G382100.t1"; gene_id "Ledus.S1G382100"
Ledus.S1	AUGUSTUS	start_codon	31046445	31046447	.	-	0	transcript_id "Ledus.S1G382100.t1"; gene_id "Ledus.S1G382100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg590.t1 is derived from g7451.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3520222	3526930	.	-	.	Ledus.S2G047200
Ledus.S2	AUGUSTUS	transcript	3520222	3526930	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	stop_codon	3520219	3520221	.	-	0	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3520222	3522851	0.68	-	2	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3520222	3522851	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3522852	3523067	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3523068	3523121	0.83	-	2	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3523068	3523121	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3523122	3523365	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3523366	3523477	1	-	0	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3523366	3523477	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3523478	3523552	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3523553	3523606	1	-	0	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3523553	3523606	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3523607	3523707	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3523708	3523774	0.98	-	1	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3523708	3523774	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3523775	3523943	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3523944	3524010	0.9	-	2	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3523944	3524010	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3524011	3524115	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3524116	3524208	0.94	-	2	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3524116	3524208	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3524209	3524312	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3524313	3524415	0.94	-	0	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3524313	3524415	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3524416	3524525	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3524526	3524610	0.99	-	1	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3524526	3524610	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3524611	3524729	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3524730	3524782	0.99	-	0	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3524730	3524782	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3524783	3524895	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3524896	3524989	1	-	1	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3524896	3524989	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3524990	3525075	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3525076	3525124	1	-	2	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3525076	3525124	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3525125	3525203	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3525204	3525249	1	-	0	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3525204	3525249	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3525250	3525348	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3525349	3525417	1	-	0	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3525349	3525417	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3525418	3525528	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3525529	3525597	0.97	-	0	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3525529	3525597	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3525598	3525701	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3525702	3525758	1	-	0	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3525702	3525758	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3525759	3525835	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3525836	3525874	1	-	0	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3525836	3525874	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3525875	3525958	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3525959	3526056	1	-	2	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3525959	3526056	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3526057	3526141	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3526142	3526240	1	-	2	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3526142	3526240	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3526241	3526717	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3526718	3526797	0.96	-	1	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3526718	3526797	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	intron	3526798	3526868	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	CDS	3526869	3526930	0.31	-	0	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	exon	3526869	3526930	.	-	.	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
Ledus.S2	AUGUSTUS	start_codon	3526928	3526930	.	-	0	transcript_id "Ledus.S2G047200.t1"; gene_id "Ledus.S2G047200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9458.t1 is derived from g10488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7133180	7134478	.	+	.	Ledus.S3G093500
Ledus.S3	AUGUSTUS	transcript	7133180	7134478	.	+	.	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	start_codon	7133180	7133182	.	+	0	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	CDS	7133180	7133316	0.97	+	0	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	exon	7133180	7133316	.	+	.	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	intron	7133317	7133525	.	+	.	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	CDS	7133526	7133586	1	+	1	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	exon	7133526	7133586	.	+	.	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	intron	7133587	7133713	.	+	.	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	CDS	7133714	7133806	1	+	0	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	exon	7133714	7133806	.	+	.	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	intron	7133807	7133951	.	+	.	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	CDS	7133952	7134028	1	+	0	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	exon	7133952	7134028	.	+	.	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	intron	7134029	7134147	.	+	.	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	CDS	7134148	7134255	1	+	1	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	exon	7134148	7134255	.	+	.	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	intron	7134256	7134411	.	+	.	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	CDS	7134412	7134478	0.55	+	1	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	exon	7134412	7134478	.	+	.	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
Ledus.S3	AUGUSTUS	stop_codon	7134479	7134481	.	+	0	transcript_id "Ledus.S3G093500.t1"; gene_id "Ledus.S3G093500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg89.t1 is derived from g9502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	379812	383548	.	+	.	Ledus.C8G004900
Ledus.C8	AUGUSTUS	transcript	379812	383548	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	start_codon	379812	379814	.	+	0	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	CDS	379812	379907	0.99	+	0	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	exon	379812	379907	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	intron	379908	380280	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	CDS	380281	380406	1	+	0	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	exon	380281	380406	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	intron	380407	380512	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	CDS	380513	380611	1	+	0	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	exon	380513	380611	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	intron	380612	380711	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	CDS	380712	380804	1	+	0	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	exon	380712	380804	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	intron	380805	380926	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	CDS	380927	381035	1	+	0	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	exon	380927	381035	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	intron	381036	381315	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	CDS	381316	382115	0.95	+	2	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	exon	381316	382115	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	intron	382116	382278	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	CDS	382279	382443	0.99	+	0	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	exon	382279	382443	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	intron	382444	382547	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	CDS	382548	382790	1	+	0	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	exon	382548	382790	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	intron	382791	382992	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	CDS	382993	383127	0.68	+	0	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	exon	382993	383127	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	intron	383128	383245	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	CDS	383246	383548	0.5	+	0	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	exon	383246	383548	.	+	.	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
Ledus.C8	AUGUSTUS	stop_codon	383549	383551	.	+	0	transcript_id "Ledus.C8G004900.t1"; gene_id "Ledus.C8G004900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12775.t1 is derived from g6397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14434937	14436533	.	+	.	Ledus.S4G193100
Ledus.S4	AUGUSTUS	transcript	14434937	14436533	.	+	.	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	start_codon	14434937	14434939	.	+	0	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	CDS	14434937	14435222	0.75	+	0	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	exon	14434937	14435222	.	+	.	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	intron	14435223	14435320	.	+	.	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	CDS	14435321	14435693	1	+	2	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	exon	14435321	14435693	.	+	.	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	intron	14435694	14435983	.	+	.	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	CDS	14435984	14436082	1	+	1	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	exon	14435984	14436082	.	+	.	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	intron	14436083	14436176	.	+	.	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	CDS	14436177	14436255	1	+	1	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	exon	14436177	14436255	.	+	.	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	intron	14436256	14436365	.	+	.	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	CDS	14436366	14436431	0.98	+	0	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	exon	14436366	14436431	.	+	.	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	intron	14436432	14436524	.	+	.	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	CDS	14436525	14436533	1	+	0	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	exon	14436525	14436533	.	+	.	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
Ledus.S4	AUGUSTUS	stop_codon	14436534	14436536	.	+	0	transcript_id "Ledus.S4G193100.t1"; gene_id "Ledus.S4G193100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2696.t1 is derived from g129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2045772	2046298	.	+	.	Ledus.S1G011700
Ledus.S1	AUGUSTUS	transcript	2045772	2046298	.	+	.	transcript_id "Ledus.S1G011700.t1"; gene_id "Ledus.S1G011700"
Ledus.S1	AUGUSTUS	start_codon	2045772	2045774	.	+	0	transcript_id "Ledus.S1G011700.t1"; gene_id "Ledus.S1G011700"
Ledus.S1	AUGUSTUS	CDS	2045772	2046097	0.82	+	0	transcript_id "Ledus.S1G011700.t1"; gene_id "Ledus.S1G011700"
Ledus.S1	AUGUSTUS	exon	2045772	2046097	.	+	.	transcript_id "Ledus.S1G011700.t1"; gene_id "Ledus.S1G011700"
Ledus.S1	AUGUSTUS	intron	2046098	2046297	.	+	.	transcript_id "Ledus.S1G011700.t1"; gene_id "Ledus.S1G011700"
Ledus.S1	AUGUSTUS	CDS	2046298	2046298	0.68	+	1	transcript_id "Ledus.S1G011700.t1"; gene_id "Ledus.S1G011700"
Ledus.S1	AUGUSTUS	exon	2046298	2046298	.	+	.	transcript_id "Ledus.S1G011700.t1"; gene_id "Ledus.S1G011700"
Ledus.S1	AUGUSTUS	stop_codon	2046299	2046301	.	+	0	transcript_id "Ledus.S1G011700.t1"; gene_id "Ledus.S1G011700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11146.t1 is derived from g4764.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2149272	2150906	.	+	.	Ledus.S4G030200
Ledus.S4	AUGUSTUS	transcript	2149272	2149752	.	+	.	transcript_id "Ledus.S4G030200.t1"; gene_id "Ledus.S4G030200"
Ledus.S4	AUGUSTUS	start_codon	2149272	2149274	.	+	0	transcript_id "Ledus.S4G030200.t1"; gene_id "Ledus.S4G030200"
Ledus.S4	AUGUSTUS	CDS	2149272	2149588	0.39	+	0	transcript_id "Ledus.S4G030200.t1"; gene_id "Ledus.S4G030200"
Ledus.S4	AUGUSTUS	exon	2149272	2149588	.	+	.	transcript_id "Ledus.S4G030200.t1"; gene_id "Ledus.S4G030200"
Ledus.S4	AUGUSTUS	intron	2149589	2149727	.	+	.	transcript_id "Ledus.S4G030200.t1"; gene_id "Ledus.S4G030200"
Ledus.S4	AUGUSTUS	CDS	2149728	2149752	1	+	1	transcript_id "Ledus.S4G030200.t1"; gene_id "Ledus.S4G030200"
Ledus.S4	AUGUSTUS	exon	2149728	2149752	.	+	.	transcript_id "Ledus.S4G030200.t1"; gene_id "Ledus.S4G030200"
Ledus.S4	AUGUSTUS	stop_codon	2149753	2149755	.	+	0	transcript_id "Ledus.S4G030200.t1"; gene_id "Ledus.S4G030200"
Ledus.S4	AUGUSTUS	transcript	2149272	2150906	.	+	.	transcript_id "Ledus.S4G030200.t2"; gene_id "Ledus.S4G030200"
Ledus.S4	AUGUSTUS	start_codon	2149272	2149274	.	+	0	transcript_id "Ledus.S4G030200.t2"; gene_id "Ledus.S4G030200"
Ledus.S4	AUGUSTUS	CDS	2149272	2150906	0.8	+	0	transcript_id "Ledus.S4G030200.t2"; gene_id "Ledus.S4G030200"
Ledus.S4	AUGUSTUS	exon	2149272	2150906	.	+	.	transcript_id "Ledus.S4G030200.t2"; gene_id "Ledus.S4G030200"
Ledus.S4	AUGUSTUS	stop_codon	2150907	2150909	.	+	0	transcript_id "Ledus.S4G030200.t2"; gene_id "Ledus.S4G030200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1140.t1 is derived from g8001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7884118	7885459	.	-	.	Ledus.S2G102200
Ledus.S2	AUGUSTUS	transcript	7884118	7885459	.	-	.	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	stop_codon	7884115	7884117	.	-	0	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	CDS	7884118	7884254	1	-	2	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	exon	7884118	7884254	.	-	.	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	intron	7884255	7884350	.	-	.	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	CDS	7884351	7884471	1	-	0	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	exon	7884351	7884471	.	-	.	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	intron	7884472	7884542	.	-	.	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	CDS	7884543	7884658	1	-	2	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	exon	7884543	7884658	.	-	.	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	intron	7884659	7884751	.	-	.	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	CDS	7884752	7884935	1	-	0	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	exon	7884752	7884935	.	-	.	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	intron	7884936	7885021	.	-	.	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	CDS	7885022	7885293	0.99	-	2	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	exon	7885022	7885293	.	-	.	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	intron	7885294	7885365	.	-	.	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	CDS	7885366	7885459	0.99	-	0	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	exon	7885366	7885459	.	-	.	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
Ledus.S2	AUGUSTUS	start_codon	7885457	7885459	.	-	0	transcript_id "Ledus.S2G102200.t1"; gene_id "Ledus.S2G102200"
# This transcript jg7884.t1 is derived from g12555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7611572	7611856	.	+	.	Ledus.S5G066200
Ledus.S5	AUGUSTUS	transcript	7611572	7611856	.	+	.	transcript_id "Ledus.S5G066200.t1"; gene_id "Ledus.S5G066200"
Ledus.S5	AUGUSTUS	start_codon	7611572	7611574	.	+	0	transcript_id "Ledus.S5G066200.t1"; gene_id "Ledus.S5G066200"
Ledus.S5	AUGUSTUS	CDS	7611572	7611709	0.73	+	0	transcript_id "Ledus.S5G066200.t1"; gene_id "Ledus.S5G066200"
Ledus.S5	AUGUSTUS	exon	7611572	7611709	.	+	.	transcript_id "Ledus.S5G066200.t1"; gene_id "Ledus.S5G066200"
Ledus.S5	AUGUSTUS	intron	7611710	7611796	.	+	.	transcript_id "Ledus.S5G066200.t1"; gene_id "Ledus.S5G066200"
Ledus.S5	AUGUSTUS	CDS	7611797	7611856	0.57	+	0	transcript_id "Ledus.S5G066200.t1"; gene_id "Ledus.S5G066200"
Ledus.S5	AUGUSTUS	exon	7611797	7611856	.	+	.	transcript_id "Ledus.S5G066200.t1"; gene_id "Ledus.S5G066200"
Ledus.S5	AUGUSTUS	stop_codon	7611857	7611859	.	+	0	transcript_id "Ledus.S5G066200.t1"; gene_id "Ledus.S5G066200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8594.t1 is derived from g9624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	493359	494135	.	-	.	Ledus.S3G007100
Ledus.S3	AUGUSTUS	transcript	493359	494135	.	-	.	transcript_id "Ledus.S3G007100.t1"; gene_id "Ledus.S3G007100"
Ledus.S3	AUGUSTUS	stop_codon	493356	493358	.	-	0	transcript_id "Ledus.S3G007100.t1"; gene_id "Ledus.S3G007100"
Ledus.S3	AUGUSTUS	CDS	493359	494135	0.94	-	0	transcript_id "Ledus.S3G007100.t1"; gene_id "Ledus.S3G007100"
Ledus.S3	AUGUSTUS	exon	493359	494135	.	-	.	transcript_id "Ledus.S3G007100.t1"; gene_id "Ledus.S3G007100"
Ledus.S3	AUGUSTUS	start_codon	494133	494135	.	-	0	transcript_id "Ledus.S3G007100.t1"; gene_id "Ledus.S3G007100"
Ledus.S3	AUGUSTUS	transcript	493359	493646	.	-	.	transcript_id "Ledus.S3G007100.t2"; gene_id "Ledus.S3G007100"
Ledus.S3	AUGUSTUS	stop_codon	493356	493358	.	-	0	transcript_id "Ledus.S3G007100.t2"; gene_id "Ledus.S3G007100"
Ledus.S3	AUGUSTUS	CDS	493359	493646	0.93	-	0	transcript_id "Ledus.S3G007100.t2"; gene_id "Ledus.S3G007100"
Ledus.S3	AUGUSTUS	exon	493359	493646	.	-	.	transcript_id "Ledus.S3G007100.t2"; gene_id "Ledus.S3G007100"
Ledus.S3	AUGUSTUS	start_codon	493644	493646	.	-	0	transcript_id "Ledus.S3G007100.t2"; gene_id "Ledus.S3G007100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10565.t1 is derived from g11595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16167787	16168002	.	-	.	Ledus.S3G204200
Ledus.S3	AUGUSTUS	transcript	16167787	16168002	.	-	.	transcript_id "Ledus.S3G204200.t1"; gene_id "Ledus.S3G204200"
Ledus.S3	AUGUSTUS	stop_codon	16167784	16167786	.	-	0	transcript_id "Ledus.S3G204200.t1"; gene_id "Ledus.S3G204200"
Ledus.S3	AUGUSTUS	CDS	16167787	16168002	0.99	-	0	transcript_id "Ledus.S3G204200.t1"; gene_id "Ledus.S3G204200"
Ledus.S3	AUGUSTUS	exon	16167787	16168002	.	-	.	transcript_id "Ledus.S3G204200.t1"; gene_id "Ledus.S3G204200"
Ledus.S3	AUGUSTUS	start_codon	16168000	16168002	.	-	0	transcript_id "Ledus.S3G204200.t1"; gene_id "Ledus.S3G204200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13100.t1 is derived from g6910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5570276	5573084	.	+	.	Ledus.S6G016200
Ledus.S6	AUGUSTUS	transcript	5570276	5573084	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	start_codon	5570276	5570278	.	+	0	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	CDS	5570276	5570278	0.42	+	0	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	exon	5570276	5570278	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	intron	5570279	5570409	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	CDS	5570410	5570525	0.47	+	0	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	exon	5570410	5570525	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	intron	5570526	5570679	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	CDS	5570680	5570711	0.46	+	1	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	exon	5570680	5570711	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	intron	5570712	5570880	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	CDS	5570881	5570947	0.42	+	2	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	exon	5570881	5570947	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	intron	5570948	5571167	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	CDS	5571168	5571270	0.31	+	1	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	exon	5571168	5571270	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	intron	5571271	5571394	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	CDS	5571395	5571444	0.54	+	0	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	exon	5571395	5571444	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	intron	5571445	5571593	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	CDS	5571594	5571618	0.77	+	1	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	exon	5571594	5571618	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	intron	5571619	5571703	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	CDS	5571704	5571805	0.77	+	0	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	exon	5571704	5571805	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	intron	5571806	5571952	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	CDS	5571953	5571962	0.76	+	0	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	exon	5571953	5571962	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	intron	5571963	5572817	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	CDS	5572818	5572845	0.98	+	2	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	exon	5572818	5572845	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	intron	5572846	5573017	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	CDS	5573018	5573084	1	+	1	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	exon	5573018	5573084	.	+	.	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
Ledus.S6	AUGUSTUS	stop_codon	5573085	5573087	.	+	0	transcript_id "Ledus.S6G016200.t1"; gene_id "Ledus.S6G016200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12032.t1 is derived from g5651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9011706	9015258	.	-	.	Ledus.S4G118800
Ledus.S4	AUGUSTUS	transcript	9011706	9015258	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	stop_codon	9011703	9011705	.	-	0	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9011706	9011759	0.94	-	0	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9011706	9011759	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9011760	9011840	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9011841	9011986	1	-	2	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9011841	9011986	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9011987	9012075	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9012076	9012308	1	-	1	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9012076	9012308	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9012309	9012402	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9012403	9012600	1	-	1	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9012403	9012600	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9012601	9012677	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9012678	9012823	1	-	0	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9012678	9012823	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9012824	9012911	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9012912	9013035	0.92	-	1	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9012912	9013035	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9013036	9013138	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9013139	9013191	1	-	0	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9013139	9013191	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9013192	9013282	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9013283	9013403	1	-	1	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9013283	9013403	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9013404	9013581	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9013582	9013754	1	-	0	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9013582	9013754	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9013755	9013848	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9013849	9014138	1	-	2	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9013849	9014138	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9014139	9014372	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9014373	9014421	1	-	0	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9014373	9014421	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9014422	9014491	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9014492	9014587	1	-	0	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9014492	9014587	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9014588	9014684	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9014685	9014841	1	-	1	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9014685	9014841	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9014842	9014954	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9014955	9015063	0.98	-	2	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9014955	9015063	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	intron	9015064	9015146	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	CDS	9015147	9015258	0.96	-	0	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	exon	9015147	9015258	.	-	.	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
Ledus.S4	AUGUSTUS	start_codon	9015256	9015258	.	-	0	transcript_id "Ledus.S4G118800.t1"; gene_id "Ledus.S4G118800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4219.t1 is derived from g1655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15622548	15623491	.	+	.	Ledus.S1G164000
Ledus.S1	AUGUSTUS	transcript	15622548	15623491	.	+	.	transcript_id "Ledus.S1G164000.t1"; gene_id "Ledus.S1G164000"
Ledus.S1	AUGUSTUS	start_codon	15622548	15622550	.	+	0	transcript_id "Ledus.S1G164000.t1"; gene_id "Ledus.S1G164000"
Ledus.S1	AUGUSTUS	CDS	15622548	15622898	0.9	+	0	transcript_id "Ledus.S1G164000.t1"; gene_id "Ledus.S1G164000"
Ledus.S1	AUGUSTUS	exon	15622548	15622898	.	+	.	transcript_id "Ledus.S1G164000.t1"; gene_id "Ledus.S1G164000"
Ledus.S1	AUGUSTUS	intron	15622899	15622999	.	+	.	transcript_id "Ledus.S1G164000.t1"; gene_id "Ledus.S1G164000"
Ledus.S1	AUGUSTUS	CDS	15623000	15623491	0.89	+	0	transcript_id "Ledus.S1G164000.t1"; gene_id "Ledus.S1G164000"
Ledus.S1	AUGUSTUS	exon	15623000	15623491	.	+	.	transcript_id "Ledus.S1G164000.t1"; gene_id "Ledus.S1G164000"
Ledus.S1	AUGUSTUS	stop_codon	15623492	15623494	.	+	0	transcript_id "Ledus.S1G164000.t1"; gene_id "Ledus.S1G164000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5270.t1 is derived from g2709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22804721	22806184	.	-	.	Ledus.S1G269100
Ledus.S1	AUGUSTUS	transcript	22804721	22806184	.	-	.	transcript_id "Ledus.S1G269100.t1"; gene_id "Ledus.S1G269100"
Ledus.S1	AUGUSTUS	stop_codon	22804718	22804720	.	-	0	transcript_id "Ledus.S1G269100.t1"; gene_id "Ledus.S1G269100"
Ledus.S1	AUGUSTUS	CDS	22804721	22806184	0.79	-	0	transcript_id "Ledus.S1G269100.t1"; gene_id "Ledus.S1G269100"
Ledus.S1	AUGUSTUS	exon	22804721	22806184	.	-	.	transcript_id "Ledus.S1G269100.t1"; gene_id "Ledus.S1G269100"
Ledus.S1	AUGUSTUS	start_codon	22806182	22806184	.	-	0	transcript_id "Ledus.S1G269100.t1"; gene_id "Ledus.S1G269100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg416.t1 is derived from g7277.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2323655	2338290	.	+	.	Ledus.S2G029800
Ledus.S2	AUGUSTUS	transcript	2323655	2338290	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	start_codon	2323655	2323657	.	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2323655	2323797	0.39	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2323655	2323797	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2323798	2324141	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2324142	2324292	1	+	1	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2324142	2324292	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2324293	2324471	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2324472	2324630	0.98	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2324472	2324630	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2324631	2324754	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2324755	2325081	0.97	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2324755	2325081	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2325082	2325173	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2325174	2325356	1	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2325174	2325356	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2325357	2325443	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2325444	2325575	1	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2325444	2325575	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2325576	2325655	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2325656	2325790	1	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2325656	2325790	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2325791	2325918	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2325919	2326149	1	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2325919	2326149	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2326150	2326324	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2326325	2326734	0.97	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2326325	2326734	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2326735	2326842	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2326843	2327070	1	+	1	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2326843	2327070	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2327071	2327173	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2327174	2327347	0.98	+	1	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2327174	2327347	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2327348	2327570	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2327571	2327883	1	+	1	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2327571	2327883	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2327884	2328014	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2328015	2328203	1	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2328015	2328203	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2328204	2328307	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2328308	2328424	0.99	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2328308	2328424	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2328425	2328667	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2328668	2328803	1	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2328668	2328803	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2328804	2328945	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2328946	2329715	0.32	+	2	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2328946	2329715	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2329716	2329824	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2329825	2329920	1	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2329825	2329920	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2329921	2330090	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2330091	2330198	1	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2330091	2330198	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2330199	2330332	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2330333	2333935	0.98	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2330333	2333935	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2333936	2334054	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2334055	2334126	0.97	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2334055	2334126	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2334127	2334243	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2334244	2334693	0.99	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2334244	2334693	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2334694	2334824	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2334825	2335632	0.96	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2334825	2335632	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2335633	2335726	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2335727	2335877	1	+	2	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2335727	2335877	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2335878	2335975	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2335976	2336185	1	+	1	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2335976	2336185	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2336186	2336317	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2336318	2336429	1	+	1	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2336318	2336429	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2336430	2336520	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2336521	2337200	1	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2336521	2337200	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2337201	2337289	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2337290	2337579	1	+	1	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2337290	2337579	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2337580	2337711	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2337712	2337824	1	+	2	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2337712	2337824	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2337825	2337981	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2337982	2338290	1	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2337982	2338290	.	+	.	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	stop_codon	2338291	2338293	.	+	0	transcript_id "Ledus.S2G029800.t1"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	transcript	2323655	2338290	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	start_codon	2323655	2323657	.	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2323655	2323797	0.36	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2323655	2323797	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2323798	2324141	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2324142	2324292	1	+	1	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2324142	2324292	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2324293	2324471	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2324472	2324630	0.99	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2324472	2324630	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2324631	2324754	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2324755	2325081	0.96	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2324755	2325081	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2325082	2325173	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2325174	2325356	1	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2325174	2325356	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2325357	2325443	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2325444	2325575	1	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2325444	2325575	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2325576	2325655	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2325656	2325790	1	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2325656	2325790	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2325791	2325918	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2325919	2326149	1	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2325919	2326149	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2326150	2326324	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2326325	2326734	0.99	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2326325	2326734	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2326735	2326842	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2326843	2327070	1	+	1	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2326843	2327070	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2327071	2327173	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2327174	2327347	0.98	+	1	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2327174	2327347	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2327348	2327570	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2327571	2327883	1	+	1	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2327571	2327883	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2327884	2328014	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2328015	2328203	1	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2328015	2328203	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2328204	2328307	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2328308	2328424	1	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2328308	2328424	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2328425	2328667	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2328668	2328803	1	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2328668	2328803	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2328804	2328945	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2328946	2329715	0.29	+	2	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2328946	2329715	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2329716	2329824	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2329825	2329920	1	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2329825	2329920	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2329921	2330090	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2330091	2330198	1	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2330091	2330198	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2330199	2330299	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2330300	2333935	0.48	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2330300	2333935	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2333936	2334054	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2334055	2334126	0.94	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2334055	2334126	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2334127	2334243	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2334244	2334693	0.99	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2334244	2334693	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2334694	2334824	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2334825	2335632	0.95	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2334825	2335632	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2335633	2335726	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2335727	2335877	0.99	+	2	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2335727	2335877	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2335878	2335975	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2335976	2336185	1	+	1	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2335976	2336185	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2336186	2336317	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2336318	2336429	1	+	1	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2336318	2336429	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2336430	2336520	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2336521	2337200	1	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2336521	2337200	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2337201	2337289	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2337290	2337579	1	+	1	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2337290	2337579	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2337580	2337711	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2337712	2337824	1	+	2	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2337712	2337824	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	intron	2337825	2337981	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	CDS	2337982	2338290	1	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	exon	2337982	2338290	.	+	.	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
Ledus.S2	AUGUSTUS	stop_codon	2338291	2338293	.	+	0	transcript_id "Ledus.S2G029800.t2"; gene_id "Ledus.S2G029800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8235.t1 is derived from g12906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10075947	10077372	.	+	.	Ledus.S5G101300
Ledus.S5	AUGUSTUS	transcript	10075947	10077372	.	+	.	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	start_codon	10075947	10075949	.	+	0	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	CDS	10075947	10076018	1	+	0	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	exon	10075947	10076018	.	+	.	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	intron	10076019	10076211	.	+	.	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	CDS	10076212	10076399	1	+	0	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	exon	10076212	10076399	.	+	.	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	intron	10076400	10076542	.	+	.	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	CDS	10076543	10076687	1	+	1	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	exon	10076543	10076687	.	+	.	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	intron	10076688	10076787	.	+	.	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	CDS	10076788	10077020	0.44	+	0	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	exon	10076788	10077020	.	+	.	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	intron	10077021	10077138	.	+	.	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	CDS	10077139	10077190	0.51	+	1	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	exon	10077139	10077190	.	+	.	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	intron	10077191	10077357	.	+	.	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	CDS	10077358	10077372	0.51	+	0	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	exon	10077358	10077372	.	+	.	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
Ledus.S5	AUGUSTUS	stop_codon	10077373	10077375	.	+	0	transcript_id "Ledus.S5G101300.t1"; gene_id "Ledus.S5G101300"
# This transcript jg9109.t2 is derived from g10139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9109.t3 is derived from g10139.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9109.t4 is derived from g10139.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9110.t1 is derived from g10140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4645015	4648545	.	-	.	Ledus.S3G058700
Ledus.S3	AUGUSTUS	transcript	4645015	4648545	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	stop_codon	4645012	4645014	.	-	0	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4645015	4645109	0.92	-	2	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4645015	4645109	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4645110	4645211	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4645212	4645368	0.9	-	0	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4645212	4645368	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4645369	4645491	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4645492	4645606	1	-	1	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4645492	4645606	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4645607	4645771	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4645772	4645839	1	-	0	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4645772	4645839	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4645840	4645967	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4645968	4646111	1	-	0	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4645968	4646111	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4646112	4646233	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4646234	4646311	1	-	0	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4646234	4646311	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4646312	4646463	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4646464	4646546	1	-	2	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4646464	4646546	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4646547	4646774	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4646775	4646814	1	-	0	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4646775	4646814	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4646815	4647077	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4647078	4647152	1	-	0	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4647078	4647152	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4647153	4647236	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4647237	4647343	0.98	-	2	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4647237	4647343	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4647344	4647457	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4647458	4647550	0.97	-	2	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4647458	4647550	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4647551	4647670	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4647671	4647710	0.96	-	0	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4647671	4647710	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4647711	4647819	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4647820	4647971	0.95	-	2	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4647820	4647971	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4647972	4648090	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4648091	4648145	1	-	0	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4648091	4648145	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4648146	4648407	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4648408	4648545	0.61	-	0	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4648408	4648545	.	-	.	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	start_codon	4648543	4648545	.	-	0	transcript_id "Ledus.S3G058700.t1"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	transcript	4645595	4648545	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	stop_codon	4645592	4645594	.	-	0	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4645595	4645606	0.62	-	0	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4645595	4645606	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4645607	4645767	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4645768	4645839	0.63	-	0	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4645768	4645839	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4645840	4645967	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4645968	4646111	1	-	0	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4645968	4646111	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4646112	4646233	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4646234	4646311	1	-	0	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4646234	4646311	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4646312	4646463	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4646464	4646546	1	-	2	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4646464	4646546	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4646547	4646774	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4646775	4646814	1	-	0	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4646775	4646814	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4646815	4647077	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4647078	4647152	1	-	0	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4647078	4647152	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4647153	4647236	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4647237	4647343	1	-	2	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4647237	4647343	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4647344	4647457	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4647458	4647550	1	-	2	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4647458	4647550	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4647551	4647670	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4647671	4647710	0.95	-	0	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4647671	4647710	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4647711	4647819	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4647820	4647971	0.94	-	2	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4647820	4647971	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4647972	4648090	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4648091	4648145	1	-	0	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4648091	4648145	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	intron	4648146	4648407	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	CDS	4648408	4648545	0.61	-	0	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	exon	4648408	4648545	.	-	.	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
Ledus.S3	AUGUSTUS	start_codon	4648543	4648545	.	-	0	transcript_id "Ledus.S3G058700.t2"; gene_id "Ledus.S3G058700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11669.t1 is derived from g5288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5843804	5845907	.	-	.	Ledus.S4G082500
Ledus.S4	AUGUSTUS	transcript	5843804	5845907	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	stop_codon	5843801	5843803	.	-	0	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	CDS	5843804	5843914	1	-	0	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	exon	5843804	5843914	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	intron	5843915	5844011	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	CDS	5844012	5844239	1	-	0	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	exon	5844012	5844239	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	intron	5844240	5844340	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	CDS	5844341	5844429	0.96	-	2	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	exon	5844341	5844429	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	intron	5844430	5844525	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	CDS	5844526	5844773	1	-	1	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	exon	5844526	5844773	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	intron	5844774	5844876	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	CDS	5844877	5844955	0.96	-	2	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	exon	5844877	5844955	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	intron	5844956	5845051	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	CDS	5845052	5845259	0.96	-	0	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	exon	5845052	5845259	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	intron	5845260	5845356	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	CDS	5845357	5845482	1	-	0	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	exon	5845357	5845482	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	intron	5845483	5845571	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	CDS	5845572	5845907	0.33	-	0	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	exon	5845572	5845907	.	-	.	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
Ledus.S4	AUGUSTUS	start_codon	5845905	5845907	.	-	0	transcript_id "Ledus.S4G082500.t1"; gene_id "Ledus.S4G082500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7733.t1 is derived from g12404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5643601	5644008	.	+	.	Ledus.S5G051100
Ledus.S5	AUGUSTUS	transcript	5643601	5644008	.	+	.	transcript_id "Ledus.S5G051100.t1"; gene_id "Ledus.S5G051100"
Ledus.S5	AUGUSTUS	start_codon	5643601	5643603	.	+	0	transcript_id "Ledus.S5G051100.t1"; gene_id "Ledus.S5G051100"
Ledus.S5	AUGUSTUS	CDS	5643601	5644008	0.99	+	0	transcript_id "Ledus.S5G051100.t1"; gene_id "Ledus.S5G051100"
Ledus.S5	AUGUSTUS	exon	5643601	5644008	.	+	.	transcript_id "Ledus.S5G051100.t1"; gene_id "Ledus.S5G051100"
Ledus.S5	AUGUSTUS	stop_codon	5644009	5644011	.	+	0	transcript_id "Ledus.S5G051100.t1"; gene_id "Ledus.S5G051100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8228.t1 is derived from g12899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10051238	10053261	.	-	.	Ledus.S5G100600
Ledus.S5	AUGUSTUS	transcript	10051238	10053261	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	stop_codon	10051235	10051237	.	-	0	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	CDS	10051238	10051260	0.92	-	2	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	exon	10051238	10051260	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	intron	10051261	10051403	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	CDS	10051404	10051518	0.66	-	0	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	exon	10051404	10051518	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	intron	10051519	10051846	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	CDS	10051847	10052031	0.46	-	2	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	exon	10051847	10052031	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	intron	10052032	10052128	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	CDS	10052129	10052332	0.93	-	2	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	exon	10052129	10052332	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	intron	10052333	10052403	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	CDS	10052404	10052653	1	-	0	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	exon	10052404	10052653	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	intron	10052654	10052763	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	CDS	10052764	10052898	0.97	-	0	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	exon	10052764	10052898	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	intron	10052899	10053006	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	CDS	10053007	10053261	0.54	-	0	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	exon	10053007	10053261	.	-	.	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
Ledus.S5	AUGUSTUS	start_codon	10053259	10053261	.	-	0	transcript_id "Ledus.S5G100600.t1"; gene_id "Ledus.S5G100600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6100.t1 is derived from g3543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28907626	28910962	.	-	.	Ledus.S1G352100
Ledus.S1	AUGUSTUS	transcript	28907626	28910962	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	stop_codon	28907623	28907625	.	-	0	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	CDS	28907626	28908382	1	-	1	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	exon	28907626	28908382	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	intron	28908383	28908464	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	CDS	28908465	28908650	0.54	-	1	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	exon	28908465	28908650	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	intron	28908651	28908805	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	CDS	28908806	28909014	0.28	-	0	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	exon	28908806	28909014	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	intron	28909015	28909123	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	CDS	28909124	28909174	0.83	-	0	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	exon	28909124	28909174	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	intron	28909175	28909259	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	CDS	28909260	28909689	0.98	-	1	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	exon	28909260	28909689	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	intron	28909690	28909788	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	CDS	28909789	28910141	1	-	0	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	exon	28909789	28910141	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	intron	28910142	28910212	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	CDS	28910213	28910437	1	-	0	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	exon	28910213	28910437	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	intron	28910438	28910518	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	CDS	28910519	28910962	0.83	-	0	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	exon	28910519	28910962	.	-	.	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
Ledus.S1	AUGUSTUS	start_codon	28910960	28910962	.	-	0	transcript_id "Ledus.S1G352100.t1"; gene_id "Ledus.S1G352100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg79.t1 is derived from g9492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	276579	276929	.	-	.	Ledus.C8G003900
Ledus.C8	AUGUSTUS	transcript	276579	276929	.	-	.	transcript_id "Ledus.C8G003900.t1"; gene_id "Ledus.C8G003900"
Ledus.C8	AUGUSTUS	stop_codon	276576	276578	.	-	0	transcript_id "Ledus.C8G003900.t1"; gene_id "Ledus.C8G003900"
Ledus.C8	AUGUSTUS	CDS	276579	276929	0.66	-	0	transcript_id "Ledus.C8G003900.t1"; gene_id "Ledus.C8G003900"
Ledus.C8	AUGUSTUS	exon	276579	276929	.	-	.	transcript_id "Ledus.C8G003900.t1"; gene_id "Ledus.C8G003900"
Ledus.C8	AUGUSTUS	start_codon	276927	276929	.	-	0	transcript_id "Ledus.C8G003900.t1"; gene_id "Ledus.C8G003900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7651.t1 is derived from g12322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4816452	4817504	.	-	.	Ledus.S5G042900
Ledus.S5	AUGUSTUS	transcript	4816452	4817504	.	-	.	transcript_id "Ledus.S5G042900.t1"; gene_id "Ledus.S5G042900"
Ledus.S5	AUGUSTUS	stop_codon	4816449	4816451	.	-	0	transcript_id "Ledus.S5G042900.t1"; gene_id "Ledus.S5G042900"
Ledus.S5	AUGUSTUS	CDS	4816452	4816545	0.81	-	1	transcript_id "Ledus.S5G042900.t1"; gene_id "Ledus.S5G042900"
Ledus.S5	AUGUSTUS	exon	4816452	4816545	.	-	.	transcript_id "Ledus.S5G042900.t1"; gene_id "Ledus.S5G042900"
Ledus.S5	AUGUSTUS	intron	4816546	4816674	.	-	.	transcript_id "Ledus.S5G042900.t1"; gene_id "Ledus.S5G042900"
Ledus.S5	AUGUSTUS	CDS	4816675	4816778	0.78	-	0	transcript_id "Ledus.S5G042900.t1"; gene_id "Ledus.S5G042900"
Ledus.S5	AUGUSTUS	exon	4816675	4816778	.	-	.	transcript_id "Ledus.S5G042900.t1"; gene_id "Ledus.S5G042900"
Ledus.S5	AUGUSTUS	intron	4816779	4817123	.	-	.	transcript_id "Ledus.S5G042900.t1"; gene_id "Ledus.S5G042900"
Ledus.S5	AUGUSTUS	CDS	4817124	4817504	0.44	-	0	transcript_id "Ledus.S5G042900.t1"; gene_id "Ledus.S5G042900"
Ledus.S5	AUGUSTUS	exon	4817124	4817504	.	-	.	transcript_id "Ledus.S5G042900.t1"; gene_id "Ledus.S5G042900"
Ledus.S5	AUGUSTUS	start_codon	4817502	4817504	.	-	0	transcript_id "Ledus.S5G042900.t1"; gene_id "Ledus.S5G042900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg896.t1 is derived from g7757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6008919	6010666	.	-	.	Ledus.S2G077800
Ledus.S2	AUGUSTUS	transcript	6008919	6010666	.	-	.	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	stop_codon	6008916	6008918	.	-	0	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	CDS	6008919	6009023	0.98	-	0	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	exon	6008919	6009023	.	-	.	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	intron	6009024	6009140	.	-	.	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	CDS	6009141	6009203	0.64	-	0	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	exon	6009141	6009203	.	-	.	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	intron	6009204	6009295	.	-	.	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	CDS	6009296	6009521	1	-	1	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	exon	6009296	6009521	.	-	.	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	intron	6009522	6009595	.	-	.	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	CDS	6009596	6010160	0.96	-	2	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	exon	6009596	6010160	.	-	.	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	intron	6010161	6010248	.	-	.	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	CDS	6010249	6010488	1	-	2	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	exon	6010249	6010488	.	-	.	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	intron	6010489	6010566	.	-	.	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	CDS	6010567	6010666	1	-	0	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	exon	6010567	6010666	.	-	.	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
Ledus.S2	AUGUSTUS	start_codon	6010664	6010666	.	-	0	transcript_id "Ledus.S2G077800.t1"; gene_id "Ledus.S2G077800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9315.t1 is derived from g10345.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6020140	6021443	.	-	.	Ledus.S3G079200
Ledus.S3	AUGUSTUS	transcript	6020140	6021443	.	-	.	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	stop_codon	6020137	6020139	.	-	0	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	CDS	6020140	6020475	0.73	-	0	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	exon	6020140	6020475	.	-	.	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	intron	6020476	6020575	.	-	.	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	CDS	6020576	6020845	0.99	-	0	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	exon	6020576	6020845	.	-	.	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	intron	6020846	6020935	.	-	.	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	CDS	6020936	6021139	1	-	0	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	exon	6020936	6021139	.	-	.	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	intron	6021140	6021230	.	-	.	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	CDS	6021231	6021443	0.99	-	0	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	exon	6021231	6021443	.	-	.	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	start_codon	6021441	6021443	.	-	0	transcript_id "Ledus.S3G079200.t1"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	transcript	6020140	6021225	.	-	.	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	stop_codon	6020137	6020139	.	-	0	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	CDS	6020140	6020475	0.81	-	0	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	exon	6020140	6020475	.	-	.	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	intron	6020476	6020575	.	-	.	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	CDS	6020576	6020845	1	-	0	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	exon	6020576	6020845	.	-	.	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	intron	6020846	6020935	.	-	.	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	CDS	6020936	6021139	1	-	0	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	exon	6020936	6021139	.	-	.	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	intron	6021140	6021222	.	-	.	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	CDS	6021223	6021225	0.87	-	0	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	exon	6021223	6021225	.	-	.	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
Ledus.S3	AUGUSTUS	start_codon	6021223	6021225	.	-	0	transcript_id "Ledus.S3G079200.t2"; gene_id "Ledus.S3G079200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12785.t1 is derived from g6407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14464201	14472129	.	-	.	Ledus.S4G194100
Ledus.S4	AUGUSTUS	transcript	14464201	14472129	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	stop_codon	14464198	14464200	.	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14464201	14464350	1	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14464201	14464350	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14464351	14464473	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14464474	14464590	1	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14464474	14464590	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14464591	14464722	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14464723	14464810	1	-	1	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14464723	14464810	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14464811	14465158	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14465159	14465236	1	-	1	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14465159	14465236	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14465237	14465392	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14465393	14465463	1	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14465393	14465463	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14465464	14465728	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14465729	14465811	1	-	2	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14465729	14465811	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14465812	14465934	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14465935	14466010	1	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14465935	14466010	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14466011	14466222	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14466223	14466322	1	-	1	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14466223	14466322	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14466323	14466431	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14466432	14466517	0.94	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14466432	14466517	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14466518	14466667	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14466668	14466805	1	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14466668	14466805	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14466806	14466886	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14466887	14467009	1	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14466887	14467009	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14467010	14467110	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14467111	14467821	0.52	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14467111	14467821	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14467822	14467958	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14467959	14468237	0.51	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14467959	14468237	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14468238	14468324	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14468325	14468534	1	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14468325	14468534	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14468535	14468613	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14468614	14468754	1	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14468614	14468754	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14468755	14468857	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14468858	14469052	0.77	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14468858	14469052	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14469053	14469154	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14469155	14469563	0.76	-	1	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14469155	14469563	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14469564	14469676	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14469677	14470540	0.98	-	1	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14469677	14470540	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14470541	14470648	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14470649	14470698	0.98	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14470649	14470698	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14470699	14470794	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14470795	14470911	1	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14470795	14470911	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14470912	14471069	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14471070	14471162	1	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14471070	14471162	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14471163	14471244	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14471245	14471337	1	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14471245	14471337	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14471338	14471404	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14471405	14471622	0.6	-	2	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14471405	14471622	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14471623	14471816	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14471817	14471990	0.84	-	2	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14471817	14471990	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	intron	14471991	14472074	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	CDS	14472075	14472129	1	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	exon	14472075	14472129	.	-	.	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
Ledus.S4	AUGUSTUS	start_codon	14472127	14472129	.	-	0	transcript_id "Ledus.S4G194100.t1"; gene_id "Ledus.S4G194100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2667.t1 is derived from g100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1498781	1499062	.	-	.	Ledus.S1G008800
Ledus.S1	AUGUSTUS	transcript	1498781	1499062	.	-	.	transcript_id "Ledus.S1G008800.t1"; gene_id "Ledus.S1G008800"
Ledus.S1	AUGUSTUS	stop_codon	1498778	1498780	.	-	0	transcript_id "Ledus.S1G008800.t1"; gene_id "Ledus.S1G008800"
Ledus.S1	AUGUSTUS	CDS	1498781	1499062	0.88	-	0	transcript_id "Ledus.S1G008800.t1"; gene_id "Ledus.S1G008800"
Ledus.S1	AUGUSTUS	exon	1498781	1499062	.	-	.	transcript_id "Ledus.S1G008800.t1"; gene_id "Ledus.S1G008800"
Ledus.S1	AUGUSTUS	start_codon	1499060	1499062	.	-	0	transcript_id "Ledus.S1G008800.t1"; gene_id "Ledus.S1G008800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8311.t1 is derived from g12983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10675226	10676432	.	-	.	Ledus.S5G108900
Ledus.S5	AUGUSTUS	transcript	10675226	10676432	.	-	.	transcript_id "Ledus.S5G108900.t1"; gene_id "Ledus.S5G108900"
Ledus.S5	AUGUSTUS	stop_codon	10675223	10675225	.	-	0	transcript_id "Ledus.S5G108900.t1"; gene_id "Ledus.S5G108900"
Ledus.S5	AUGUSTUS	CDS	10675226	10675699	0.78	-	0	transcript_id "Ledus.S5G108900.t1"; gene_id "Ledus.S5G108900"
Ledus.S5	AUGUSTUS	exon	10675226	10675699	.	-	.	transcript_id "Ledus.S5G108900.t1"; gene_id "Ledus.S5G108900"
Ledus.S5	AUGUSTUS	intron	10675700	10675793	.	-	.	transcript_id "Ledus.S5G108900.t1"; gene_id "Ledus.S5G108900"
Ledus.S5	AUGUSTUS	CDS	10675794	10676432	0.63	-	0	transcript_id "Ledus.S5G108900.t1"; gene_id "Ledus.S5G108900"
Ledus.S5	AUGUSTUS	exon	10675794	10676432	.	-	.	transcript_id "Ledus.S5G108900.t1"; gene_id "Ledus.S5G108900"
Ledus.S5	AUGUSTUS	start_codon	10676430	10676432	.	-	0	transcript_id "Ledus.S5G108900.t1"; gene_id "Ledus.S5G108900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg650.t1 is derived from g7511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3891510	3894023	.	+	.	Ledus.S2G053200
Ledus.S2	AUGUSTUS	transcript	3891510	3894023	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	start_codon	3891510	3891512	.	+	0	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	CDS	3891510	3891591	1	+	0	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	exon	3891510	3891591	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	intron	3891592	3891903	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	CDS	3891904	3892160	1	+	2	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	exon	3891904	3892160	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	intron	3892161	3892288	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	CDS	3892289	3892510	1	+	0	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	exon	3892289	3892510	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	intron	3892511	3892708	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	CDS	3892709	3893034	1	+	0	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	exon	3892709	3893034	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	intron	3893035	3893145	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	CDS	3893146	3893275	1	+	1	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	exon	3893146	3893275	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	intron	3893276	3893376	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	CDS	3893377	3893673	0.97	+	0	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	exon	3893377	3893673	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	intron	3893674	3893759	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	CDS	3893760	3894023	1	+	0	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	exon	3893760	3894023	.	+	.	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
Ledus.S2	AUGUSTUS	stop_codon	3894024	3894026	.	+	0	transcript_id "Ledus.S2G053200.t1"; gene_id "Ledus.S2G053200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg15.t1 is derived from g9538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C20	AUGUSTUS	gene	10811	11050	.	+	.	Ledus.C20G000100
Ledus.C20	AUGUSTUS	transcript	10811	11050	.	+	.	transcript_id "Ledus.C20G000100.t1"; gene_id "Ledus.C20G000100"
Ledus.C20	AUGUSTUS	start_codon	10811	10813	.	+	0	transcript_id "Ledus.C20G000100.t1"; gene_id "Ledus.C20G000100"
Ledus.C20	AUGUSTUS	CDS	10811	11050	0.74	+	0	transcript_id "Ledus.C20G000100.t1"; gene_id "Ledus.C20G000100"
Ledus.C20	AUGUSTUS	exon	10811	11050	.	+	.	transcript_id "Ledus.C20G000100.t1"; gene_id "Ledus.C20G000100"
Ledus.C20	AUGUSTUS	stop_codon	11051	11053	.	+	0	transcript_id "Ledus.C20G000100.t1"; gene_id "Ledus.C20G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2372.t1 is derived from g9235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17705804	17707771	.	-	.	Ledus.S2G225400
Ledus.S2	AUGUSTUS	transcript	17705804	17707771	.	-	.	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	stop_codon	17705801	17705803	.	-	0	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	CDS	17705804	17706377	0.99	-	1	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	exon	17705804	17706377	.	-	.	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	intron	17706378	17706464	.	-	.	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	CDS	17706465	17706612	1	-	2	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	exon	17706465	17706612	.	-	.	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	intron	17706613	17706729	.	-	.	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	CDS	17706730	17706931	1	-	0	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	exon	17706730	17706931	.	-	.	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	intron	17706932	17707036	.	-	.	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	CDS	17707037	17707292	1	-	1	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	exon	17707037	17707292	.	-	.	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	intron	17707293	17707508	.	-	.	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	CDS	17707509	17707771	1	-	0	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	exon	17707509	17707771	.	-	.	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
Ledus.S2	AUGUSTUS	start_codon	17707769	17707771	.	-	0	transcript_id "Ledus.S2G225400.t1"; gene_id "Ledus.S2G225400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg263.t1 is derived from g7124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1283495	1284339	.	+	.	Ledus.S2G014500
Ledus.S2	AUGUSTUS	transcript	1283495	1284339	.	+	.	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	start_codon	1283495	1283497	.	+	0	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	CDS	1283495	1283718	0.95	+	0	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	exon	1283495	1283718	.	+	.	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	intron	1283719	1283878	.	+	.	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	CDS	1283879	1283936	1	+	1	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	exon	1283879	1283936	.	+	.	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	intron	1283937	1284063	.	+	.	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	CDS	1284064	1284123	0.66	+	0	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	exon	1284064	1284123	.	+	.	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	intron	1284124	1284243	.	+	.	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	CDS	1284244	1284339	0.63	+	0	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	exon	1284244	1284339	.	+	.	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
Ledus.S2	AUGUSTUS	stop_codon	1284340	1284342	.	+	0	transcript_id "Ledus.S2G014500.t1"; gene_id "Ledus.S2G014500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1769.t1 is derived from g8631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12420030	12423181	.	-	.	Ledus.S2G165100
Ledus.S2	AUGUSTUS	transcript	12420030	12423181	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	stop_codon	12420027	12420029	.	-	0	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	CDS	12420030	12420317	0.98	-	0	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	exon	12420030	12420317	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	intron	12420318	12420415	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	CDS	12420416	12420552	1	-	2	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	exon	12420416	12420552	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	intron	12420553	12420647	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	CDS	12420648	12421605	1	-	0	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	exon	12420648	12421605	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	intron	12421606	12421736	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	CDS	12421737	12421994	1	-	0	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	exon	12421737	12421994	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	intron	12421995	12422081	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	CDS	12422082	12422309	1	-	0	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	exon	12422082	12422309	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	intron	12422310	12422404	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	CDS	12422405	12422635	1	-	0	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	exon	12422405	12422635	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	intron	12422636	12422881	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	CDS	12422882	12423181	0.69	-	0	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	exon	12422882	12423181	.	-	.	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
Ledus.S2	AUGUSTUS	start_codon	12423179	12423181	.	-	0	transcript_id "Ledus.S2G165100.t1"; gene_id "Ledus.S2G165100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8525.t1 is derived from g9555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17230	36418	.	-	.	Ledus.S3G000200
Ledus.S3	AUGUSTUS	transcript	17230	36418	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	stop_codon	17227	17229	.	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	17230	17348	1	-	2	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	17230	17348	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	17349	17431	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	17432	17747	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	17432	17747	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	17748	17819	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	17820	17972	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	17820	17972	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	17973	18062	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	18063	18334	1	-	2	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	18063	18334	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	18335	18429	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	18430	18658	0.99	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	18430	18658	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	18659	18750	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	18751	18855	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	18751	18855	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	18856	18947	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	18948	19298	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	18948	19298	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	19299	19383	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	19384	19536	0.98	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	19384	19536	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	19537	19628	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	19629	19811	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	19629	19811	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	19812	19896	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	19897	20112	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	19897	20112	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	20113	20201	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	20202	20306	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	20202	20306	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	20307	20397	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	20398	20670	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	20398	20670	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	20671	20770	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	20771	20896	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	20771	20896	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	20897	21046	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	21047	21244	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	21047	21244	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	21245	21371	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	21372	21668	0.92	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	21372	21668	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	21669	21767	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	21768	21926	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	21768	21926	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	21927	22011	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	22012	22314	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	22012	22314	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	22315	22454	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	22455	22628	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	22455	22628	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	22629	22716	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	22717	22881	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	22717	22881	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	22882	23049	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	23050	23301	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	23050	23301	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	23302	23567	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	23568	23918	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	23568	23918	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	23919	24050	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	24051	24359	0.78	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	24051	24359	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	24360	24618	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	24619	24672	0.78	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	24619	24672	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	24673	24805	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	24806	25042	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	24806	25042	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	25043	25172	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	25173	25229	0.48	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	25173	25229	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	25230	25460	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	25461	26507	0.39	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	25461	26507	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	26508	26668	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	26669	26878	0.72	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	26669	26878	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	26879	26974	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	26975	27094	0.77	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	26975	27094	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	27095	27235	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	27236	27427	0.84	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	27236	27427	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	27428	27516	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	27517	27660	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	27517	27660	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	27661	27806	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	27807	28094	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	27807	28094	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	28095	28279	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	28280	28478	0.88	-	1	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	28280	28478	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	28479	28597	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	28598	28866	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	28598	28866	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	28867	28955	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	28956	29243	0.67	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	28956	29243	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	29244	29355	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	29356	29487	0.79	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	29356	29487	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	29488	29622	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	29623	29784	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	29623	29784	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	29785	29949	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	29950	30042	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	29950	30042	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	30043	30265	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	30266	30493	0.9	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	30266	30493	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	30494	30606	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	30607	30996	0.59	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	30607	30996	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	30997	31110	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	31111	31374	0.89	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	31111	31374	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	31375	31496	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	31497	31850	0.98	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	31497	31850	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	31851	31995	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	31996	32241	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	31996	32241	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	32242	32323	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	32324	32508	1	-	2	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	32324	32508	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	32509	32640	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	32641	32735	1	-	1	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	32641	32735	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	32736	32908	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	32909	33093	1	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	32909	33093	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	33094	33200	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	33201	33452	0.44	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	33201	33452	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	33453	33624	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	33625	33904	0.65	-	1	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	33625	33904	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	33905	34313	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	34314	34424	1	-	1	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	34314	34424	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	34425	34553	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	34554	35022	0.36	-	2	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	34554	35022	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	35023	35230	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	35231	35316	0.67	-	1	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	35231	35316	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	35317	35659	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	35660	35812	0.98	-	1	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	35660	35812	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	35813	35916	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	35917	36023	0.88	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	35917	36023	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	36024	36183	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	36184	36290	0.97	-	2	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	36184	36290	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	intron	36291	36369	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	CDS	36370	36418	0.72	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	exon	36370	36418	.	-	.	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
Ledus.S3	AUGUSTUS	start_codon	36416	36418	.	-	0	transcript_id "Ledus.S3G000200.t1"; gene_id "Ledus.S3G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11075.t1 is derived from g4693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1616174	1618371	.	-	.	Ledus.S4G023100
Ledus.S4	AUGUSTUS	transcript	1616174	1618371	.	-	.	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	stop_codon	1616171	1616173	.	-	0	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	CDS	1616174	1616179	0.9	-	0	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	exon	1616174	1616179	.	-	.	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	intron	1616180	1616268	.	-	.	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	CDS	1616269	1616277	0.9	-	0	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	exon	1616269	1616277	.	-	.	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	intron	1616278	1616452	.	-	.	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	CDS	1616453	1616754	0.36	-	2	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	exon	1616453	1616754	.	-	.	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	intron	1616755	1616846	.	-	.	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	CDS	1616847	1618371	0.74	-	0	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	exon	1616847	1618371	.	-	.	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
Ledus.S4	AUGUSTUS	start_codon	1618369	1618371	.	-	0	transcript_id "Ledus.S4G023100.t1"; gene_id "Ledus.S4G023100"
# This transcript jg2113.t2 is derived from g8976.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2114.t1 is derived from g8977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14792208	14792948	.	-	.	Ledus.S2G199600
Ledus.S2	AUGUSTUS	transcript	14792208	14792948	.	-	.	transcript_id "Ledus.S2G199600.t1"; gene_id "Ledus.S2G199600"
Ledus.S2	AUGUSTUS	stop_codon	14792205	14792207	.	-	0	transcript_id "Ledus.S2G199600.t1"; gene_id "Ledus.S2G199600"
Ledus.S2	AUGUSTUS	CDS	14792208	14792948	1	-	0	transcript_id "Ledus.S2G199600.t1"; gene_id "Ledus.S2G199600"
Ledus.S2	AUGUSTUS	exon	14792208	14792948	.	-	.	transcript_id "Ledus.S2G199600.t1"; gene_id "Ledus.S2G199600"
Ledus.S2	AUGUSTUS	start_codon	14792946	14792948	.	-	0	transcript_id "Ledus.S2G199600.t1"; gene_id "Ledus.S2G199600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5870.t1 is derived from g3312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27483435	27484479	.	-	.	Ledus.S1G329100
Ledus.S1	AUGUSTUS	transcript	27483435	27484479	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	stop_codon	27483432	27483434	.	-	0	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	CDS	27483435	27483463	1	-	2	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	exon	27483435	27483463	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	intron	27483464	27483547	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	CDS	27483548	27483617	1	-	0	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	exon	27483548	27483617	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	intron	27483618	27483702	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	CDS	27483703	27483774	0.52	-	0	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	exon	27483703	27483774	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	intron	27483775	27483879	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	CDS	27483880	27483927	1	-	0	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	exon	27483880	27483927	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	intron	27483928	27484001	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	CDS	27484002	27484064	1	-	0	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	exon	27484002	27484064	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	intron	27484065	27484157	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	CDS	27484158	27484249	0.84	-	2	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	exon	27484158	27484249	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	intron	27484250	27484331	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	CDS	27484332	27484479	0.66	-	0	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	exon	27484332	27484479	.	-	.	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
Ledus.S1	AUGUSTUS	start_codon	27484477	27484479	.	-	0	transcript_id "Ledus.S1G329100.t1"; gene_id "Ledus.S1G329100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7534.t1 is derived from g12205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3650135	3655493	.	+	.	Ledus.S5G031200
Ledus.S5	AUGUSTUS	transcript	3650135	3652754	.	+	.	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	start_codon	3650135	3650137	.	+	0	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3650135	3650978	0.52	+	0	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3650135	3650978	.	+	.	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	intron	3650979	3651067	.	+	.	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3651068	3651172	1	+	2	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3651068	3651172	.	+	.	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	intron	3651173	3651252	.	+	.	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3651253	3651387	0.99	+	2	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3651253	3651387	.	+	.	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	intron	3651388	3652533	.	+	.	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3652534	3652754	0.97	+	2	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3652534	3652754	.	+	.	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	stop_codon	3652755	3652757	.	+	0	transcript_id "Ledus.S5G031200.t1"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	transcript	3650135	3655493	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	start_codon	3650135	3650137	.	+	0	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3650135	3650978	0.57	+	0	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3650135	3650978	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	intron	3650979	3651067	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3651068	3651172	1	+	2	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3651068	3651172	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	intron	3651173	3651252	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3651253	3651387	0.89	+	2	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3651253	3651387	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	intron	3651388	3654614	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3654615	3654646	0.47	+	2	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3654615	3654646	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	intron	3654647	3654793	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3654794	3654821	0.81	+	0	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3654794	3654821	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	intron	3654822	3655158	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3655159	3655234	0.81	+	2	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3655159	3655234	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	intron	3655235	3655396	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3655397	3655493	0.79	+	1	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3655397	3655493	.	+	.	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	stop_codon	3655494	3655496	.	+	0	transcript_id "Ledus.S5G031200.t2"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	transcript	3654602	3655493	.	+	.	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	start_codon	3654602	3654604	.	+	0	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3654602	3654646	0.68	+	0	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3654602	3654646	.	+	.	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	intron	3654647	3654793	.	+	.	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3654794	3654821	0.7	+	0	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3654794	3654821	.	+	.	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	intron	3654822	3655158	.	+	.	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3655159	3655234	0.7	+	2	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3655159	3655234	.	+	.	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	intron	3655235	3655396	.	+	.	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	CDS	3655397	3655493	0.67	+	1	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	exon	3655397	3655493	.	+	.	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
Ledus.S5	AUGUSTUS	stop_codon	3655494	3655496	.	+	0	transcript_id "Ledus.S5G031200.t3"; gene_id "Ledus.S5G031200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4589.t1 is derived from g2026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17951442	17952672	.	-	.	Ledus.S1G201000
Ledus.S1	AUGUSTUS	transcript	17951442	17952672	.	-	.	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	stop_codon	17951439	17951441	.	-	0	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	CDS	17951442	17951833	1	-	2	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	exon	17951442	17951833	.	-	.	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	intron	17951834	17951928	.	-	.	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	CDS	17951929	17952094	0.99	-	0	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	exon	17951929	17952094	.	-	.	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	intron	17952095	17952174	.	-	.	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	CDS	17952175	17952363	0.99	-	0	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	exon	17952175	17952363	.	-	.	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	intron	17952364	17952450	.	-	.	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	CDS	17952451	17952672	0.81	-	0	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	exon	17952451	17952672	.	-	.	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
Ledus.S1	AUGUSTUS	start_codon	17952670	17952672	.	-	0	transcript_id "Ledus.S1G201000.t1"; gene_id "Ledus.S1G201000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg808.t1 is derived from g7669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5230135	5232138	.	+	.	Ledus.S2G069000
Ledus.S2	AUGUSTUS	transcript	5230135	5232138	.	+	.	transcript_id "Ledus.S2G069000.t1"; gene_id "Ledus.S2G069000"
Ledus.S2	AUGUSTUS	start_codon	5230135	5230137	.	+	0	transcript_id "Ledus.S2G069000.t1"; gene_id "Ledus.S2G069000"
Ledus.S2	AUGUSTUS	CDS	5230135	5232138	0.5	+	0	transcript_id "Ledus.S2G069000.t1"; gene_id "Ledus.S2G069000"
Ledus.S2	AUGUSTUS	exon	5230135	5232138	.	+	.	transcript_id "Ledus.S2G069000.t1"; gene_id "Ledus.S2G069000"
Ledus.S2	AUGUSTUS	stop_codon	5232139	5232141	.	+	0	transcript_id "Ledus.S2G069000.t1"; gene_id "Ledus.S2G069000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg694.t1 is derived from g7555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4214839	4220374	.	-	.	Ledus.S2G057600
Ledus.S2	AUGUSTUS	transcript	4214839	4220374	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	stop_codon	4214836	4214838	.	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4214839	4214946	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4214839	4214946	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4214947	4215044	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4215045	4215148	1	-	2	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4215045	4215148	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4215149	4215239	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4215240	4215354	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4215240	4215354	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4215355	4215438	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4215439	4215489	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4215439	4215489	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4215490	4215577	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4215578	4215667	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4215578	4215667	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4215668	4215767	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4215768	4215842	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4215768	4215842	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4215843	4216052	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4216053	4216205	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4216053	4216205	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4216206	4216299	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4216300	4216384	1	-	1	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4216300	4216384	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4216385	4216540	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4216541	4216611	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4216541	4216611	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4216612	4216703	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4216704	4216754	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4216704	4216754	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4216755	4216841	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4216842	4217258	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4216842	4217258	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4217259	4217402	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4217403	4217534	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4217403	4217534	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4217535	4217672	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4217673	4217786	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4217673	4217786	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4217787	4217875	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4217876	4217993	1	-	1	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4217876	4217993	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4217994	4218129	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4218130	4218188	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4218130	4218188	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4218189	4218354	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4218355	4218418	1	-	1	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4218355	4218418	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4218419	4218520	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4218521	4218657	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4218521	4218657	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4218658	4218747	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4218748	4219002	1	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4218748	4219002	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4219003	4219180	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4219181	4219731	0.6	-	2	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4219181	4219731	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	intron	4219732	4219953	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	CDS	4219954	4220374	0.39	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	exon	4219954	4220374	.	-	.	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
Ledus.S2	AUGUSTUS	start_codon	4220372	4220374	.	-	0	transcript_id "Ledus.S2G057600.t1"; gene_id "Ledus.S2G057600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11719.t1 is derived from g5338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6240932	6242381	.	-	.	Ledus.S4G087500
Ledus.S4	AUGUSTUS	transcript	6240932	6242381	.	-	.	transcript_id "Ledus.S4G087500.t1"; gene_id "Ledus.S4G087500"
Ledus.S4	AUGUSTUS	stop_codon	6240929	6240931	.	-	0	transcript_id "Ledus.S4G087500.t1"; gene_id "Ledus.S4G087500"
Ledus.S4	AUGUSTUS	CDS	6240932	6241831	1	-	0	transcript_id "Ledus.S4G087500.t1"; gene_id "Ledus.S4G087500"
Ledus.S4	AUGUSTUS	exon	6240932	6241831	.	-	.	transcript_id "Ledus.S4G087500.t1"; gene_id "Ledus.S4G087500"
Ledus.S4	AUGUSTUS	intron	6241832	6241913	.	-	.	transcript_id "Ledus.S4G087500.t1"; gene_id "Ledus.S4G087500"
Ledus.S4	AUGUSTUS	CDS	6241914	6242381	0.69	-	0	transcript_id "Ledus.S4G087500.t1"; gene_id "Ledus.S4G087500"
Ledus.S4	AUGUSTUS	exon	6241914	6242381	.	-	.	transcript_id "Ledus.S4G087500.t1"; gene_id "Ledus.S4G087500"
Ledus.S4	AUGUSTUS	start_codon	6242379	6242381	.	-	0	transcript_id "Ledus.S4G087500.t1"; gene_id "Ledus.S4G087500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2630.t1 is derived from g63.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	832221	832860	.	-	.	Ledus.S1G005100
Ledus.S1	AUGUSTUS	transcript	832221	832860	.	-	.	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	stop_codon	832218	832220	.	-	0	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	CDS	832221	832251	1	-	1	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	exon	832221	832251	.	-	.	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	intron	832252	832339	.	-	.	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	CDS	832340	832416	1	-	0	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	exon	832340	832416	.	-	.	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	intron	832417	832510	.	-	.	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	CDS	832511	832623	1	-	2	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	exon	832511	832623	.	-	.	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	intron	832624	832733	.	-	.	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	CDS	832734	832739	0.64	-	2	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	exon	832734	832739	.	-	.	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	intron	832740	832811	.	-	.	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	CDS	832812	832860	0.53	-	0	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	exon	832812	832860	.	-	.	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
Ledus.S1	AUGUSTUS	start_codon	832858	832860	.	-	0	transcript_id "Ledus.S1G005100.t1"; gene_id "Ledus.S1G005100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2332.t1 is derived from g9195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17222161	17224324	.	+	.	Ledus.S2G221400
Ledus.S2	AUGUSTUS	transcript	17222161	17224324	.	+	.	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	start_codon	17222161	17222163	.	+	0	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	CDS	17222161	17222163	0.48	+	0	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	exon	17222161	17222163	.	+	.	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	intron	17222164	17222306	.	+	.	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	CDS	17222307	17222354	0.49	+	0	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	exon	17222307	17222354	.	+	.	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	intron	17222355	17222430	.	+	.	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	CDS	17222431	17223006	0.47	+	0	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	exon	17222431	17223006	.	+	.	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	intron	17223007	17223568	.	+	.	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	CDS	17223569	17223895	1	+	0	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	exon	17223569	17223895	.	+	.	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	intron	17223896	17223978	.	+	.	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	CDS	17223979	17224034	0.99	+	0	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	exon	17223979	17224034	.	+	.	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	intron	17224035	17224125	.	+	.	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	CDS	17224126	17224324	0.98	+	1	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	exon	17224126	17224324	.	+	.	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
Ledus.S2	AUGUSTUS	stop_codon	17224325	17224327	.	+	0	transcript_id "Ledus.S2G221400.t1"; gene_id "Ledus.S2G221400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10101.t1 is derived from g11131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12666097	12667036	.	+	.	Ledus.S3G157800
Ledus.S3	AUGUSTUS	transcript	12666097	12667036	.	+	.	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	start_codon	12666097	12666099	.	+	0	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	CDS	12666097	12666320	1	+	0	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	exon	12666097	12666320	.	+	.	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	intron	12666321	12666409	.	+	.	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	CDS	12666410	12666546	1	+	1	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	exon	12666410	12666546	.	+	.	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	intron	12666547	12666630	.	+	.	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	CDS	12666631	12666767	1	+	2	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	exon	12666631	12666767	.	+	.	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	intron	12666768	12666862	.	+	.	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	CDS	12666863	12667036	1	+	0	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	exon	12666863	12667036	.	+	.	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
Ledus.S3	AUGUSTUS	stop_codon	12667037	12667039	.	+	0	transcript_id "Ledus.S3G157800.t1"; gene_id "Ledus.S3G157800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3967.t1 is derived from g1403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13807802	13808392	.	-	.	Ledus.S1G138800
Ledus.S1	AUGUSTUS	transcript	13807802	13808392	.	-	.	transcript_id "Ledus.S1G138800.t1"; gene_id "Ledus.S1G138800"
Ledus.S1	AUGUSTUS	stop_codon	13807799	13807801	.	-	0	transcript_id "Ledus.S1G138800.t1"; gene_id "Ledus.S1G138800"
Ledus.S1	AUGUSTUS	CDS	13807802	13808392	0.72	-	0	transcript_id "Ledus.S1G138800.t1"; gene_id "Ledus.S1G138800"
Ledus.S1	AUGUSTUS	exon	13807802	13808392	.	-	.	transcript_id "Ledus.S1G138800.t1"; gene_id "Ledus.S1G138800"
Ledus.S1	AUGUSTUS	start_codon	13808390	13808392	.	-	0	transcript_id "Ledus.S1G138800.t1"; gene_id "Ledus.S1G138800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4033.t1 is derived from g1469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14267139	14268893	.	-	.	Ledus.S1G145400
Ledus.S1	AUGUSTUS	transcript	14267139	14268893	.	-	.	transcript_id "Ledus.S1G145400.t1"; gene_id "Ledus.S1G145400"
Ledus.S1	AUGUSTUS	stop_codon	14267136	14267138	.	-	0	transcript_id "Ledus.S1G145400.t1"; gene_id "Ledus.S1G145400"
Ledus.S1	AUGUSTUS	CDS	14267139	14267396	0.94	-	0	transcript_id "Ledus.S1G145400.t1"; gene_id "Ledus.S1G145400"
Ledus.S1	AUGUSTUS	exon	14267139	14267396	.	-	.	transcript_id "Ledus.S1G145400.t1"; gene_id "Ledus.S1G145400"
Ledus.S1	AUGUSTUS	intron	14267397	14267477	.	-	.	transcript_id "Ledus.S1G145400.t1"; gene_id "Ledus.S1G145400"
Ledus.S1	AUGUSTUS	CDS	14267478	14268893	0.68	-	0	transcript_id "Ledus.S1G145400.t1"; gene_id "Ledus.S1G145400"
Ledus.S1	AUGUSTUS	exon	14267478	14268893	.	-	.	transcript_id "Ledus.S1G145400.t1"; gene_id "Ledus.S1G145400"
Ledus.S1	AUGUSTUS	start_codon	14268891	14268893	.	-	0	transcript_id "Ledus.S1G145400.t1"; gene_id "Ledus.S1G145400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1437.t1 is derived from g8298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10100845	10104488	.	-	.	Ledus.S2G131900
Ledus.S2	AUGUSTUS	transcript	10100845	10104488	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	stop_codon	10100842	10100844	.	-	0	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10100845	10100943	0.96	-	0	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10100845	10100943	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10100944	10101029	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10101030	10101260	1	-	0	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10101030	10101260	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10101261	10101353	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10101354	10101578	1	-	0	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10101354	10101578	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10101579	10101663	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10101664	10101834	1	-	0	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10101664	10101834	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10101835	10101933	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10101934	10102070	1	-	2	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10101934	10102070	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10102071	10102147	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10102148	10102302	1	-	1	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10102148	10102302	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10102303	10102368	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10102369	10102492	1	-	2	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10102369	10102492	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10102493	10102599	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10102600	10102700	1	-	1	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10102600	10102700	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10102701	10102788	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10102789	10102871	1	-	0	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10102789	10102871	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10102872	10102949	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10102950	10103174	1	-	0	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10102950	10103174	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10103175	10103340	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10103341	10103553	0.99	-	0	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10103341	10103553	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10103554	10103636	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10103637	10103713	0.78	-	2	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10103637	10103713	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10103714	10103850	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10103851	10104070	0.78	-	0	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10103851	10104070	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10104071	10104275	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10104276	10104488	0.98	-	0	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10104276	10104488	.	-	.	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	start_codon	10104486	10104488	.	-	0	transcript_id "Ledus.S2G131900.t1"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	transcript	10100845	10104488	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	stop_codon	10100842	10100844	.	-	0	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10100845	10100943	0.97	-	0	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10100845	10100943	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10100944	10101029	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10101030	10101260	1	-	0	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10101030	10101260	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10101261	10101353	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10101354	10101578	1	-	0	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10101354	10101578	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10101579	10101663	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10101664	10101834	1	-	0	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10101664	10101834	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10101835	10101933	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10101934	10102070	1	-	2	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10101934	10102070	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10102071	10102147	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10102148	10102302	1	-	1	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10102148	10102302	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10102303	10102368	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10102369	10102492	1	-	2	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10102369	10102492	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10102493	10102599	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10102600	10102700	1	-	1	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10102600	10102700	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10102701	10102788	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10102789	10102871	1	-	0	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10102789	10102871	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10102872	10102949	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10102950	10103174	0.97	-	0	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10102950	10103174	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10103175	10103249	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10103250	10103289	0.97	-	1	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10103250	10103289	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10103290	10103374	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10103375	10103553	0.97	-	0	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10103375	10103553	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10103554	10103636	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10103637	10103713	0.79	-	2	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10103637	10103713	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10103714	10103850	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10103851	10104070	0.79	-	0	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10103851	10104070	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	intron	10104071	10104275	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	CDS	10104276	10104488	0.94	-	0	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	exon	10104276	10104488	.	-	.	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
Ledus.S2	AUGUSTUS	start_codon	10104486	10104488	.	-	0	transcript_id "Ledus.S2G131900.t2"; gene_id "Ledus.S2G131900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg542.t1 is derived from g7403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3138485	3140146	.	+	.	Ledus.S2G042400
Ledus.S2	AUGUSTUS	transcript	3138485	3140146	.	+	.	transcript_id "Ledus.S2G042400.t1"; gene_id "Ledus.S2G042400"
Ledus.S2	AUGUSTUS	start_codon	3138485	3138487	.	+	0	transcript_id "Ledus.S2G042400.t1"; gene_id "Ledus.S2G042400"
Ledus.S2	AUGUSTUS	CDS	3138485	3140146	1	+	0	transcript_id "Ledus.S2G042400.t1"; gene_id "Ledus.S2G042400"
Ledus.S2	AUGUSTUS	exon	3138485	3140146	.	+	.	transcript_id "Ledus.S2G042400.t1"; gene_id "Ledus.S2G042400"
Ledus.S2	AUGUSTUS	stop_codon	3140147	3140149	.	+	0	transcript_id "Ledus.S2G042400.t1"; gene_id "Ledus.S2G042400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5917.t1 is derived from g3360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27770133	27771569	.	-	.	Ledus.S1G333800
Ledus.S1	AUGUSTUS	transcript	27770133	27771569	.	-	.	transcript_id "Ledus.S1G333800.t1"; gene_id "Ledus.S1G333800"
Ledus.S1	AUGUSTUS	stop_codon	27770130	27770132	.	-	0	transcript_id "Ledus.S1G333800.t1"; gene_id "Ledus.S1G333800"
Ledus.S1	AUGUSTUS	CDS	27770133	27770644	0.45	-	2	transcript_id "Ledus.S1G333800.t1"; gene_id "Ledus.S1G333800"
Ledus.S1	AUGUSTUS	exon	27770133	27770644	.	-	.	transcript_id "Ledus.S1G333800.t1"; gene_id "Ledus.S1G333800"
Ledus.S1	AUGUSTUS	intron	27770645	27771138	.	-	.	transcript_id "Ledus.S1G333800.t1"; gene_id "Ledus.S1G333800"
Ledus.S1	AUGUSTUS	CDS	27771139	27771150	0.32	-	2	transcript_id "Ledus.S1G333800.t1"; gene_id "Ledus.S1G333800"
Ledus.S1	AUGUSTUS	exon	27771139	27771150	.	-	.	transcript_id "Ledus.S1G333800.t1"; gene_id "Ledus.S1G333800"
Ledus.S1	AUGUSTUS	intron	27771151	27771250	.	-	.	transcript_id "Ledus.S1G333800.t1"; gene_id "Ledus.S1G333800"
Ledus.S1	AUGUSTUS	CDS	27771251	27771569	0.32	-	0	transcript_id "Ledus.S1G333800.t1"; gene_id "Ledus.S1G333800"
Ledus.S1	AUGUSTUS	exon	27771251	27771569	.	-	.	transcript_id "Ledus.S1G333800.t1"; gene_id "Ledus.S1G333800"
Ledus.S1	AUGUSTUS	start_codon	27771567	27771569	.	-	0	transcript_id "Ledus.S1G333800.t1"; gene_id "Ledus.S1G333800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10996.t1 is derived from g4614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1047149	1048473	.	-	.	Ledus.S4G015200
Ledus.S4	AUGUSTUS	transcript	1047149	1048473	.	-	.	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	stop_codon	1047146	1047148	.	-	0	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	CDS	1047149	1047382	0.88	-	0	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	exon	1047149	1047382	.	-	.	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	intron	1047383	1047562	.	-	.	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	CDS	1047563	1047689	1	-	1	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	exon	1047563	1047689	.	-	.	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	intron	1047690	1047834	.	-	.	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	CDS	1047835	1048057	1	-	2	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	exon	1047835	1048057	.	-	.	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	intron	1048058	1048203	.	-	.	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	CDS	1048204	1048236	1	-	2	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	exon	1048204	1048236	.	-	.	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	intron	1048237	1048373	.	-	.	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	CDS	1048374	1048473	0.99	-	0	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	exon	1048374	1048473	.	-	.	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
Ledus.S4	AUGUSTUS	start_codon	1048471	1048473	.	-	0	transcript_id "Ledus.S4G015200.t1"; gene_id "Ledus.S4G015200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8832.t1 is derived from g9862.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2199688	2202738	.	+	.	Ledus.S3G030900
Ledus.S3	AUGUSTUS	transcript	2199688	2202738	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	start_codon	2199688	2199690	.	+	0	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2199688	2199804	0.9	+	0	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2199688	2199804	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2199805	2199966	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2199967	2200170	0.99	+	0	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2199967	2200170	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2200171	2200233	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2200234	2200251	0.97	+	0	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2200234	2200251	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2200252	2200349	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2200350	2200621	1	+	0	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2200350	2200621	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2200622	2200709	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2200710	2200761	1	+	1	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2200710	2200761	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2200762	2200843	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2200844	2200923	1	+	0	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2200844	2200923	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2200924	2201098	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2201099	2201180	1	+	1	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2201099	2201180	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2201181	2201295	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2201296	2201366	1	+	0	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2201296	2201366	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2201367	2201501	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2201502	2201581	1	+	1	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2201502	2201581	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2201582	2201696	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2201697	2201794	1	+	2	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2201697	2201794	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2201795	2201940	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2201941	2202079	1	+	0	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2201941	2202079	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2202080	2202194	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2202195	2202277	1	+	2	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2202195	2202277	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2202278	2202363	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2202364	2202412	1	+	0	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2202364	2202412	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	intron	2202413	2202490	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	CDS	2202491	2202738	0.98	+	2	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	exon	2202491	2202738	.	+	.	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
Ledus.S3	AUGUSTUS	stop_codon	2202739	2202741	.	+	0	transcript_id "Ledus.S3G030900.t1"; gene_id "Ledus.S3G030900"
# This transcript jg8766.t2 is derived from g9796.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8767.t1 is derived from g9797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1888943	1889773	.	-	.	Ledus.S3G024400
Ledus.S3	AUGUSTUS	transcript	1888943	1889773	.	-	.	transcript_id "Ledus.S3G024400.t1"; gene_id "Ledus.S3G024400"
Ledus.S3	AUGUSTUS	stop_codon	1888940	1888942	.	-	0	transcript_id "Ledus.S3G024400.t1"; gene_id "Ledus.S3G024400"
Ledus.S3	AUGUSTUS	CDS	1888943	1889773	0.91	-	0	transcript_id "Ledus.S3G024400.t1"; gene_id "Ledus.S3G024400"
Ledus.S3	AUGUSTUS	exon	1888943	1889773	.	-	.	transcript_id "Ledus.S3G024400.t1"; gene_id "Ledus.S3G024400"
Ledus.S3	AUGUSTUS	start_codon	1889771	1889773	.	-	0	transcript_id "Ledus.S3G024400.t1"; gene_id "Ledus.S3G024400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8704.t1 is derived from g9734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1513737	1514957	.	-	.	Ledus.S3G018100
Ledus.S3	AUGUSTUS	transcript	1513737	1514957	.	-	.	transcript_id "Ledus.S3G018100.t1"; gene_id "Ledus.S3G018100"
Ledus.S3	AUGUSTUS	stop_codon	1513734	1513736	.	-	0	transcript_id "Ledus.S3G018100.t1"; gene_id "Ledus.S3G018100"
Ledus.S3	AUGUSTUS	CDS	1513737	1514132	0.9	-	0	transcript_id "Ledus.S3G018100.t1"; gene_id "Ledus.S3G018100"
Ledus.S3	AUGUSTUS	exon	1513737	1514132	.	-	.	transcript_id "Ledus.S3G018100.t1"; gene_id "Ledus.S3G018100"
Ledus.S3	AUGUSTUS	intron	1514133	1514240	.	-	.	transcript_id "Ledus.S3G018100.t1"; gene_id "Ledus.S3G018100"
Ledus.S3	AUGUSTUS	CDS	1514241	1514957	0.53	-	0	transcript_id "Ledus.S3G018100.t1"; gene_id "Ledus.S3G018100"
Ledus.S3	AUGUSTUS	exon	1514241	1514957	.	-	.	transcript_id "Ledus.S3G018100.t1"; gene_id "Ledus.S3G018100"
Ledus.S3	AUGUSTUS	start_codon	1514955	1514957	.	-	0	transcript_id "Ledus.S3G018100.t1"; gene_id "Ledus.S3G018100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10170.t1 is derived from g11200.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13437488	13440006	.	-	.	Ledus.S3G164700
Ledus.S3	AUGUSTUS	transcript	13437488	13440006	.	-	.	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	stop_codon	13437485	13437487	.	-	0	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	CDS	13437488	13437556	1	-	0	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	exon	13437488	13437556	.	-	.	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	intron	13437557	13437655	.	-	.	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	CDS	13437656	13437757	1	-	0	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	exon	13437656	13437757	.	-	.	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	intron	13437758	13437840	.	-	.	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	CDS	13437841	13437960	1	-	0	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	exon	13437841	13437960	.	-	.	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	intron	13437961	13438052	.	-	.	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	CDS	13438053	13438159	0.53	-	2	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	exon	13438053	13438159	.	-	.	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	intron	13438160	13438982	.	-	.	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	CDS	13438983	13439013	0.97	-	0	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	exon	13438983	13439013	.	-	.	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	intron	13439014	13439235	.	-	.	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	CDS	13439236	13440006	0.35	-	0	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	exon	13439236	13440006	.	-	.	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	start_codon	13440004	13440006	.	-	0	transcript_id "Ledus.S3G164700.t1"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	transcript	13437488	13440006	.	-	.	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	stop_codon	13437485	13437487	.	-	0	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	CDS	13437488	13437556	0.98	-	0	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	exon	13437488	13437556	.	-	.	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	intron	13437557	13437655	.	-	.	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	CDS	13437656	13437757	1	-	0	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	exon	13437656	13437757	.	-	.	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	intron	13437758	13437840	.	-	.	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	CDS	13437841	13437951	0.7	-	0	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	exon	13437841	13437951	.	-	.	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	intron	13437952	13438052	.	-	.	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	CDS	13438053	13438159	0.46	-	2	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	exon	13438053	13438159	.	-	.	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	intron	13438160	13438982	.	-	.	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	CDS	13438983	13439013	0.98	-	0	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	exon	13438983	13439013	.	-	.	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	intron	13439014	13439235	.	-	.	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	CDS	13439236	13440006	0.31	-	0	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	exon	13439236	13440006	.	-	.	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
Ledus.S3	AUGUSTUS	start_codon	13440004	13440006	.	-	0	transcript_id "Ledus.S3G164700.t2"; gene_id "Ledus.S3G164700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10231.t1 is derived from g11261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13715268	13716510	.	-	.	Ledus.S3G170800
Ledus.S3	AUGUSTUS	transcript	13715268	13716510	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	stop_codon	13715265	13715267	.	-	0	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	CDS	13715268	13715373	0.96	-	1	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	exon	13715268	13715373	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	intron	13715374	13715477	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	CDS	13715478	13715565	0.98	-	2	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	exon	13715478	13715565	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	intron	13715566	13715721	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	CDS	13715722	13715792	0.91	-	1	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	exon	13715722	13715792	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	intron	13715793	13715893	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	CDS	13715894	13716008	0.91	-	2	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	exon	13715894	13716008	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	intron	13716009	13716108	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	CDS	13716109	13716160	1	-	0	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	exon	13716109	13716160	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	intron	13716161	13716243	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	CDS	13716244	13716319	1	-	1	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	exon	13716244	13716319	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	intron	13716320	13716397	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	CDS	13716398	13716510	0.38	-	0	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	exon	13716398	13716510	.	-	.	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
Ledus.S3	AUGUSTUS	start_codon	13716508	13716510	.	-	0	transcript_id "Ledus.S3G170800.t1"; gene_id "Ledus.S3G170800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3323.t1 is derived from g758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7458412	7459085	.	-	.	Ledus.S1G074400
Ledus.S1	AUGUSTUS	transcript	7458412	7459085	.	-	.	transcript_id "Ledus.S1G074400.t1"; gene_id "Ledus.S1G074400"
Ledus.S1	AUGUSTUS	stop_codon	7458409	7458411	.	-	0	transcript_id "Ledus.S1G074400.t1"; gene_id "Ledus.S1G074400"
Ledus.S1	AUGUSTUS	CDS	7458412	7458671	0.67	-	2	transcript_id "Ledus.S1G074400.t1"; gene_id "Ledus.S1G074400"
Ledus.S1	AUGUSTUS	exon	7458412	7458671	.	-	.	transcript_id "Ledus.S1G074400.t1"; gene_id "Ledus.S1G074400"
Ledus.S1	AUGUSTUS	intron	7458672	7458820	.	-	.	transcript_id "Ledus.S1G074400.t1"; gene_id "Ledus.S1G074400"
Ledus.S1	AUGUSTUS	CDS	7458821	7459085	0.78	-	0	transcript_id "Ledus.S1G074400.t1"; gene_id "Ledus.S1G074400"
Ledus.S1	AUGUSTUS	exon	7458821	7459085	.	-	.	transcript_id "Ledus.S1G074400.t1"; gene_id "Ledus.S1G074400"
Ledus.S1	AUGUSTUS	start_codon	7459083	7459085	.	-	0	transcript_id "Ledus.S1G074400.t1"; gene_id "Ledus.S1G074400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3591.t1 is derived from g1027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9872758	9873822	.	+	.	Ledus.S1G101200
Ledus.S1	AUGUSTUS	transcript	9872758	9873822	.	+	.	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	start_codon	9872758	9872760	.	+	0	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	CDS	9872758	9872935	0.81	+	0	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	exon	9872758	9872935	.	+	.	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	intron	9872936	9873021	.	+	.	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	CDS	9873022	9873322	1	+	2	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	exon	9873022	9873322	.	+	.	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	intron	9873323	9873405	.	+	.	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	CDS	9873406	9873532	0.99	+	1	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	exon	9873406	9873532	.	+	.	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	intron	9873533	9873630	.	+	.	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	CDS	9873631	9873822	1	+	0	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	exon	9873631	9873822	.	+	.	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
Ledus.S1	AUGUSTUS	stop_codon	9873823	9873825	.	+	0	transcript_id "Ledus.S1G101200.t1"; gene_id "Ledus.S1G101200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10421.t1 is derived from g11451.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15050871	15052921	.	-	.	Ledus.S3G189800
Ledus.S3	AUGUSTUS	transcript	15050871	15052921	.	-	.	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	stop_codon	15050868	15050870	.	-	0	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	CDS	15050871	15050961	0.97	-	1	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	exon	15050871	15050961	.	-	.	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	intron	15050962	15051039	.	-	.	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	CDS	15051040	15051119	1	-	0	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	exon	15051040	15051119	.	-	.	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	intron	15051120	15051206	.	-	.	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	CDS	15051207	15051251	0.99	-	0	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	exon	15051207	15051251	.	-	.	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	intron	15051252	15051323	.	-	.	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	CDS	15051324	15052212	0.54	-	1	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	exon	15051324	15052212	.	-	.	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	intron	15052213	15052448	.	-	.	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	CDS	15052449	15052462	0.54	-	0	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	exon	15052449	15052462	.	-	.	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	intron	15052463	15052906	.	-	.	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	CDS	15052907	15052921	0.99	-	0	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	exon	15052907	15052921	.	-	.	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
Ledus.S3	AUGUSTUS	start_codon	15052919	15052921	.	-	0	transcript_id "Ledus.S3G189800.t1"; gene_id "Ledus.S3G189800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8546.t1 is derived from g9576.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	119370	122694	.	+	.	Ledus.S3G002300
Ledus.S3	AUGUSTUS	transcript	119370	122694	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	start_codon	119370	119372	.	+	0	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	119370	119394	0.97	+	0	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	119370	119394	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	119395	119642	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	119643	119704	0.99	+	2	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	119643	119704	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	119705	119808	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	119809	119881	0.99	+	0	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	119809	119881	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	119882	119971	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	119972	120039	1	+	2	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	119972	120039	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	120040	120140	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	120141	120210	1	+	0	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	120141	120210	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	120211	120315	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	120316	120384	1	+	2	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	120316	120384	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	120385	120488	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	120489	120560	1	+	2	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	120489	120560	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	120561	120650	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	120651	120724	1	+	2	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	120651	120724	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	120725	120907	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	120908	121185	1	+	0	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	120908	121185	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	121186	121368	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	121369	121753	1	+	1	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	121369	121753	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	121754	121887	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	121888	122013	1	+	0	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	121888	122013	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	122014	122100	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	122101	122205	0.99	+	0	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	122101	122205	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	122206	122325	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	122326	122400	1	+	0	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	122326	122400	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	intron	122401	122511	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	CDS	122512	122694	0.99	+	0	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	exon	122512	122694	.	+	.	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
Ledus.S3	AUGUSTUS	stop_codon	122695	122697	.	+	0	transcript_id "Ledus.S3G002300.t1"; gene_id "Ledus.S3G002300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7567.t1 is derived from g12238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4080978	4081359	.	+	.	Ledus.S5G034500
Ledus.S5	AUGUSTUS	transcript	4080978	4081359	.	+	.	transcript_id "Ledus.S5G034500.t1"; gene_id "Ledus.S5G034500"
Ledus.S5	AUGUSTUS	start_codon	4080978	4080980	.	+	0	transcript_id "Ledus.S5G034500.t1"; gene_id "Ledus.S5G034500"
Ledus.S5	AUGUSTUS	CDS	4080978	4081046	1	+	0	transcript_id "Ledus.S5G034500.t1"; gene_id "Ledus.S5G034500"
Ledus.S5	AUGUSTUS	exon	4080978	4081046	.	+	.	transcript_id "Ledus.S5G034500.t1"; gene_id "Ledus.S5G034500"
Ledus.S5	AUGUSTUS	intron	4081047	4081138	.	+	.	transcript_id "Ledus.S5G034500.t1"; gene_id "Ledus.S5G034500"
Ledus.S5	AUGUSTUS	CDS	4081139	4081243	1	+	0	transcript_id "Ledus.S5G034500.t1"; gene_id "Ledus.S5G034500"
Ledus.S5	AUGUSTUS	exon	4081139	4081243	.	+	.	transcript_id "Ledus.S5G034500.t1"; gene_id "Ledus.S5G034500"
Ledus.S5	AUGUSTUS	intron	4081244	4081320	.	+	.	transcript_id "Ledus.S5G034500.t1"; gene_id "Ledus.S5G034500"
Ledus.S5	AUGUSTUS	CDS	4081321	4081359	1	+	0	transcript_id "Ledus.S5G034500.t1"; gene_id "Ledus.S5G034500"
Ledus.S5	AUGUSTUS	exon	4081321	4081359	.	+	.	transcript_id "Ledus.S5G034500.t1"; gene_id "Ledus.S5G034500"
Ledus.S5	AUGUSTUS	stop_codon	4081360	4081362	.	+	0	transcript_id "Ledus.S5G034500.t1"; gene_id "Ledus.S5G034500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6606.t1 is derived from g4049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32630264	32631697	.	-	.	Ledus.S1G402700
Ledus.S1	AUGUSTUS	transcript	32630264	32631697	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	stop_codon	32630261	32630263	.	-	0	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	CDS	32630264	32630284	1	-	0	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	exon	32630264	32630284	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	intron	32630285	32630370	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	CDS	32630371	32630433	1	-	0	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	exon	32630371	32630433	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	intron	32630434	32630590	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	CDS	32630591	32630663	1	-	1	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	exon	32630591	32630663	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	intron	32630664	32630743	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	CDS	32630744	32630835	1	-	0	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	exon	32630744	32630835	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	intron	32630836	32630989	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	CDS	32630990	32631372	0.71	-	2	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	exon	32630990	32631372	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	intron	32631373	32631441	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	CDS	32631442	32631460	0.84	-	0	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	exon	32631442	32631460	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	intron	32631461	32631628	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	CDS	32631629	32631697	0.92	-	0	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	exon	32631629	32631697	.	-	.	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
Ledus.S1	AUGUSTUS	start_codon	32631695	32631697	.	-	0	transcript_id "Ledus.S1G402700.t1"; gene_id "Ledus.S1G402700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4146.t1 is derived from g1582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14949050	14958024	.	-	.	Ledus.S1G156700
Ledus.S1	AUGUSTUS	transcript	14949050	14958024	.	-	.	transcript_id "Ledus.S1G156700.t1"; gene_id "Ledus.S1G156700"
Ledus.S1	AUGUSTUS	stop_codon	14949047	14949049	.	-	0	transcript_id "Ledus.S1G156700.t1"; gene_id "Ledus.S1G156700"
Ledus.S1	AUGUSTUS	CDS	14949050	14949073	0.01	-	0	transcript_id "Ledus.S1G156700.t1"; gene_id "Ledus.S1G156700"
Ledus.S1	AUGUSTUS	exon	14949050	14949073	.	-	.	transcript_id "Ledus.S1G156700.t1"; gene_id "Ledus.S1G156700"
Ledus.S1	AUGUSTUS	intron	14949074	14952824	.	-	.	transcript_id "Ledus.S1G156700.t1"; gene_id "Ledus.S1G156700"
Ledus.S1	AUGUSTUS	CDS	14952825	14954234	1	-	0	transcript_id "Ledus.S1G156700.t1"; gene_id "Ledus.S1G156700"
Ledus.S1	AUGUSTUS	exon	14952825	14954234	.	-	.	transcript_id "Ledus.S1G156700.t1"; gene_id "Ledus.S1G156700"
Ledus.S1	AUGUSTUS	intron	14954235	14958000	.	-	.	transcript_id "Ledus.S1G156700.t1"; gene_id "Ledus.S1G156700"
Ledus.S1	AUGUSTUS	CDS	14958001	14958024	0.98	-	0	transcript_id "Ledus.S1G156700.t1"; gene_id "Ledus.S1G156700"
Ledus.S1	AUGUSTUS	exon	14958001	14958024	.	-	.	transcript_id "Ledus.S1G156700.t1"; gene_id "Ledus.S1G156700"
Ledus.S1	AUGUSTUS	start_codon	14958022	14958024	.	-	0	transcript_id "Ledus.S1G156700.t1"; gene_id "Ledus.S1G156700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg701.t1 is derived from g7562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4318497	4321853	.	+	.	Ledus.S2G058300
Ledus.S2	AUGUSTUS	transcript	4318497	4321853	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	start_codon	4318497	4318499	.	+	0	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4318497	4318523	1	+	0	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4318497	4318523	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4318524	4319021	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4319022	4319231	1	+	0	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4319022	4319231	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4319232	4319304	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4319305	4319371	1	+	0	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4319305	4319371	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4319372	4319465	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4319466	4319524	1	+	2	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4319466	4319524	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4319525	4319614	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4319615	4319690	1	+	0	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4319615	4319690	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4319691	4319818	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4319819	4319890	1	+	2	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4319819	4319890	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4319891	4319982	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4319983	4320070	1	+	2	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4319983	4320070	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4320071	4320239	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4320240	4320489	1	+	1	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4320240	4320489	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4320490	4320606	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4320607	4320722	1	+	0	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4320607	4320722	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4320723	4320820	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4320821	4321041	1	+	1	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4320821	4321041	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4321042	4321169	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4321170	4321201	1	+	2	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4321170	4321201	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4321202	4321292	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4321293	4321395	1	+	0	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4321293	4321395	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4321396	4321488	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4321489	4321597	1	+	2	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4321489	4321597	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	intron	4321598	4321684	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	CDS	4321685	4321853	1	+	1	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	exon	4321685	4321853	.	+	.	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
Ledus.S2	AUGUSTUS	stop_codon	4321854	4321856	.	+	0	transcript_id "Ledus.S2G058300.t1"; gene_id "Ledus.S2G058300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg511.t1 is derived from g7372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2998539	3002657	.	+	.	Ledus.S2G039300
Ledus.S2	AUGUSTUS	transcript	2998539	3002657	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	start_codon	2998539	2998541	.	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	2998539	2998622	0.55	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	2998539	2998622	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	2998623	2998761	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	2998762	2998845	0.99	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	2998762	2998845	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	2998846	2998953	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	2998954	2999179	0.99	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	2998954	2999179	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	2999180	2999310	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	2999311	2999429	1	+	2	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	2999311	2999429	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	2999430	2999518	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	2999519	2999600	1	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	2999519	2999600	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	2999601	2999695	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	2999696	2999925	0.8	+	2	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	2999696	2999925	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	2999926	3000038	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3000039	3000168	1	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3000039	3000168	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	3000169	3000360	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3000361	3000416	1	+	2	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3000361	3000416	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	3000417	3000545	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3000546	3000619	1	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3000546	3000619	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	3000620	3000825	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3000826	3000872	1	+	1	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3000826	3000872	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	3000873	3000969	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3000970	3001019	1	+	2	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3000970	3001019	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	3001020	3001163	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3001164	3001229	1	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3001164	3001229	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	3001230	3001343	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3001344	3001424	0.99	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3001344	3001424	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	3001425	3001559	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3001560	3001670	0.61	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3001560	3001670	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	3001671	3001786	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3001787	3001862	1	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3001787	3001862	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	3001863	3001950	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3001951	3002093	0.92	+	2	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3001951	3002093	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	3002094	3002201	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3002202	3002275	0.98	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3002202	3002275	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	3002276	3002352	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3002353	3002458	0.99	+	1	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3002353	3002458	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	intron	3002459	3002570	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	CDS	3002571	3002657	0.86	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	exon	3002571	3002657	.	+	.	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
Ledus.S2	AUGUSTUS	stop_codon	3002658	3002660	.	+	0	transcript_id "Ledus.S2G039300.t1"; gene_id "Ledus.S2G039300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1886.t1 is derived from g8749.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13187038	13189651	.	+	.	Ledus.S2G176800
Ledus.S2	AUGUSTUS	transcript	13187038	13189651	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	start_codon	13187038	13187040	.	+	0	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13187038	13187332	0.7	+	0	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13187038	13187332	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13187333	13187604	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13187605	13187769	0.97	+	2	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13187605	13187769	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13187770	13187864	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13187865	13187953	1	+	2	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13187865	13187953	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13187954	13188051	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13188052	13188121	1	+	0	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13188052	13188121	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13188122	13188261	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13188262	13188352	1	+	2	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13188262	13188352	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13188353	13188502	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13188503	13188572	1	+	1	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13188503	13188572	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13188573	13188664	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13188665	13188714	1	+	0	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13188665	13188714	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13188715	13188808	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13188809	13188966	1	+	1	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13188809	13188966	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13188967	13189056	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13189057	13189131	1	+	2	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13189057	13189131	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13189132	13189234	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13189235	13189293	0.83	+	2	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13189235	13189293	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13189294	13189438	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13189439	13189651	0.96	+	0	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13189439	13189651	.	+	.	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	stop_codon	13189652	13189654	.	+	0	transcript_id "Ledus.S2G176800.t1"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	transcript	13187038	13189651	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	start_codon	13187038	13187040	.	+	0	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13187038	13187332	0.66	+	0	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13187038	13187332	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13187333	13187604	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13187605	13187769	0.97	+	2	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13187605	13187769	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13187770	13187864	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13187865	13187953	1	+	2	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13187865	13187953	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13187954	13188051	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13188052	13188121	1	+	0	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13188052	13188121	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13188122	13188261	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13188262	13188352	1	+	2	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13188262	13188352	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13188353	13188502	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13188503	13188572	1	+	1	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13188503	13188572	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13188573	13188664	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13188665	13188760	0.97	+	0	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13188665	13188760	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13188761	13188866	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13188867	13188966	0.97	+	0	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13188867	13188966	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13188967	13189056	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13189057	13189131	1	+	2	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13189057	13189131	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13189132	13189234	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13189235	13189293	0.86	+	2	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13189235	13189293	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	intron	13189294	13189438	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	CDS	13189439	13189651	0.99	+	0	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	exon	13189439	13189651	.	+	.	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
Ledus.S2	AUGUSTUS	stop_codon	13189652	13189654	.	+	0	transcript_id "Ledus.S2G176800.t2"; gene_id "Ledus.S2G176800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg685.t1 is derived from g7546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4180828	4182730	.	+	.	Ledus.S2G056700
Ledus.S2	AUGUSTUS	transcript	4180828	4182730	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	start_codon	4180828	4180830	.	+	0	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	CDS	4180828	4181049	0.27	+	0	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	exon	4180828	4181049	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	intron	4181050	4181409	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	CDS	4181410	4181428	1	+	0	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	exon	4181410	4181428	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	intron	4181429	4181627	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	CDS	4181628	4181683	1	+	2	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	exon	4181628	4181683	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	intron	4181684	4181768	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	CDS	4181769	4181885	1	+	0	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	exon	4181769	4181885	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	intron	4181886	4182017	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	CDS	4182018	4182200	1	+	0	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	exon	4182018	4182200	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	intron	4182201	4182300	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	CDS	4182301	4182447	1	+	0	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	exon	4182301	4182447	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	intron	4182448	4182578	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	CDS	4182579	4182666	1	+	0	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	exon	4182579	4182666	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	intron	4182667	4182728	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	CDS	4182729	4182730	1	+	2	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	exon	4182729	4182730	.	+	.	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
Ledus.S2	AUGUSTUS	stop_codon	4182731	4182733	.	+	0	transcript_id "Ledus.S2G056700.t1"; gene_id "Ledus.S2G056700"
# This transcript jg11739.t2 is derived from g5358.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11740.t1 is derived from g5359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6521375	6524670	.	-	.	Ledus.S4G089600
Ledus.S4	AUGUSTUS	transcript	6521375	6524670	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	stop_codon	6521372	6521374	.	-	0	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6521375	6521454	0.5	-	2	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6521375	6521454	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	intron	6521455	6521735	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6521736	6521823	0.52	-	0	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6521736	6521823	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	intron	6521824	6521933	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6521934	6522119	0.99	-	0	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6521934	6522119	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	intron	6522120	6522260	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6522261	6522386	1	-	0	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6522261	6522386	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	intron	6522387	6522534	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6522535	6522759	1	-	0	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6522535	6522759	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	intron	6522760	6522831	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6522832	6522918	1	-	0	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6522832	6522918	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	intron	6522919	6523020	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6523021	6523126	0.9	-	1	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6523021	6523126	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	intron	6523127	6523325	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6523326	6523435	1	-	0	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6523326	6523435	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	intron	6523436	6523573	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6523574	6523690	1	-	0	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6523574	6523690	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	intron	6523691	6523810	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6523811	6523895	1	-	1	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6523811	6523895	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	intron	6523896	6523994	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6523995	6524098	0.98	-	0	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6523995	6524098	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	intron	6524099	6524199	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6524200	6524291	0.97	-	2	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6524200	6524291	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	intron	6524292	6524621	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	CDS	6524622	6524670	0.91	-	0	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	exon	6524622	6524670	.	-	.	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
Ledus.S4	AUGUSTUS	start_codon	6524668	6524670	.	-	0	transcript_id "Ledus.S4G089600.t1"; gene_id "Ledus.S4G089600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4572.t1 is derived from g2009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17769762	17772020	.	-	.	Ledus.S1G199300
Ledus.S1	AUGUSTUS	transcript	17769830	17772020	.	-	.	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	stop_codon	17769827	17769829	.	-	0	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17769830	17769845	0.99	-	1	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17769830	17769845	.	-	.	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	intron	17769846	17770119	.	-	.	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17770120	17770270	0.99	-	2	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17770120	17770270	.	-	.	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	intron	17770271	17770572	.	-	.	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17770573	17770755	1	-	2	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17770573	17770755	.	-	.	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	intron	17770756	17770940	.	-	.	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17770941	17771053	1	-	1	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17770941	17771053	.	-	.	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	intron	17771054	17771695	.	-	.	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17771696	17771781	1	-	0	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17771696	17771781	.	-	.	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	intron	17771782	17771951	.	-	.	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17771952	17772020	0.77	-	0	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17771952	17772020	.	-	.	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	start_codon	17772018	17772020	.	-	0	transcript_id "Ledus.S1G199300.t1"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	transcript	17769762	17772020	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	stop_codon	17769759	17769761	.	-	0	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17769762	17769845	0.75	-	0	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17769762	17769845	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	intron	17769846	17770024	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17770025	17770034	0.75	-	1	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17770025	17770034	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	intron	17770035	17770119	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17770120	17770270	0.75	-	2	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17770120	17770270	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	intron	17770271	17770572	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17770573	17770755	1	-	2	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17770573	17770755	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	intron	17770756	17770940	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17770941	17771053	1	-	1	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17770941	17771053	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	intron	17771054	17771695	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17771696	17771781	1	-	0	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17771696	17771781	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	intron	17771782	17771951	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	CDS	17771952	17772020	0.85	-	0	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	exon	17771952	17772020	.	-	.	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
Ledus.S1	AUGUSTUS	start_codon	17772018	17772020	.	-	0	transcript_id "Ledus.S1G199300.t2"; gene_id "Ledus.S1G199300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6383.t1 is derived from g3826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30954084	30955494	.	+	.	Ledus.S1G380400
Ledus.S1	AUGUSTUS	transcript	30954084	30955494	.	+	.	transcript_id "Ledus.S1G380400.t1"; gene_id "Ledus.S1G380400"
Ledus.S1	AUGUSTUS	start_codon	30954084	30954086	.	+	0	transcript_id "Ledus.S1G380400.t1"; gene_id "Ledus.S1G380400"
Ledus.S1	AUGUSTUS	CDS	30954084	30954528	0.77	+	0	transcript_id "Ledus.S1G380400.t1"; gene_id "Ledus.S1G380400"
Ledus.S1	AUGUSTUS	exon	30954084	30954528	.	+	.	transcript_id "Ledus.S1G380400.t1"; gene_id "Ledus.S1G380400"
Ledus.S1	AUGUSTUS	intron	30954529	30954795	.	+	.	transcript_id "Ledus.S1G380400.t1"; gene_id "Ledus.S1G380400"
Ledus.S1	AUGUSTUS	CDS	30954796	30955101	1	+	2	transcript_id "Ledus.S1G380400.t1"; gene_id "Ledus.S1G380400"
Ledus.S1	AUGUSTUS	exon	30954796	30955101	.	+	.	transcript_id "Ledus.S1G380400.t1"; gene_id "Ledus.S1G380400"
Ledus.S1	AUGUSTUS	intron	30955102	30955192	.	+	.	transcript_id "Ledus.S1G380400.t1"; gene_id "Ledus.S1G380400"
Ledus.S1	AUGUSTUS	CDS	30955193	30955494	0.94	+	2	transcript_id "Ledus.S1G380400.t1"; gene_id "Ledus.S1G380400"
Ledus.S1	AUGUSTUS	exon	30955193	30955494	.	+	.	transcript_id "Ledus.S1G380400.t1"; gene_id "Ledus.S1G380400"
Ledus.S1	AUGUSTUS	stop_codon	30955495	30955497	.	+	0	transcript_id "Ledus.S1G380400.t1"; gene_id "Ledus.S1G380400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8321.t1 is derived from g12993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10726839	10729854	.	-	.	Ledus.S5G109900
Ledus.S5	AUGUSTUS	transcript	10726839	10729854	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	stop_codon	10726836	10726838	.	-	0	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	CDS	10726839	10726974	0.94	-	1	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	exon	10726839	10726974	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	intron	10726975	10727108	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	CDS	10727109	10727203	1	-	0	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	exon	10727109	10727203	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	intron	10727204	10727336	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	CDS	10727337	10727423	1	-	0	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	exon	10727337	10727423	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	intron	10727424	10727572	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	CDS	10727573	10727757	0.99	-	2	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	exon	10727573	10727757	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	intron	10727758	10727877	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	CDS	10727878	10727890	1	-	0	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	exon	10727878	10727890	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	intron	10727891	10728255	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	CDS	10728256	10728356	1	-	2	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	exon	10728256	10728356	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	intron	10728357	10728456	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	CDS	10728457	10728524	1	-	1	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	exon	10728457	10728524	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	intron	10728525	10728654	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	CDS	10728655	10728704	1	-	0	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	exon	10728655	10728704	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	intron	10728705	10728868	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	CDS	10728869	10728954	1	-	2	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	exon	10728869	10728954	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	intron	10728955	10729102	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	CDS	10729103	10729272	0.99	-	1	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	exon	10729103	10729272	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	intron	10729273	10729495	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	CDS	10729496	10729854	0.52	-	0	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	exon	10729496	10729854	.	-	.	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
Ledus.S5	AUGUSTUS	start_codon	10729852	10729854	.	-	0	transcript_id "Ledus.S5G109900.t1"; gene_id "Ledus.S5G109900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12909.t1 is derived from g4401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	293911	295457	.	-	.	Ledus.C9G001700
Ledus.C9	AUGUSTUS	transcript	293911	295457	.	-	.	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	stop_codon	293908	293910	.	-	0	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	CDS	293911	294008	1	-	2	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	exon	293911	294008	.	-	.	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	intron	294009	294104	.	-	.	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	CDS	294105	294820	1	-	1	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	exon	294105	294820	.	-	.	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	intron	294821	294927	.	-	.	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	CDS	294928	295103	1	-	0	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	exon	294928	295103	.	-	.	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	intron	295104	295195	.	-	.	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	CDS	295196	295333	1	-	0	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	exon	295196	295333	.	-	.	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	intron	295334	295409	.	-	.	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	CDS	295410	295457	1	-	0	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	exon	295410	295457	.	-	.	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
Ledus.C9	AUGUSTUS	start_codon	295455	295457	.	-	0	transcript_id "Ledus.C9G001700.t1"; gene_id "Ledus.C9G001700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1955.t1 is derived from g8818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13708262	13711533	.	-	.	Ledus.S2G183700
Ledus.S2	AUGUSTUS	transcript	13708262	13711533	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	stop_codon	13708259	13708261	.	-	0	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	CDS	13708262	13708558	0.9	-	0	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	exon	13708262	13708558	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	intron	13708559	13708645	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	CDS	13708646	13709005	1	-	0	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	exon	13708646	13709005	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	intron	13709006	13709142	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	CDS	13709143	13709424	1	-	0	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	exon	13709143	13709424	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	intron	13709425	13709569	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	CDS	13709570	13709641	1	-	0	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	exon	13709570	13709641	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	intron	13709642	13709723	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	CDS	13709724	13709945	1	-	0	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	exon	13709724	13709945	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	intron	13709946	13710038	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	CDS	13710039	13710805	0.93	-	2	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	exon	13710039	13710805	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	intron	13710806	13710915	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	CDS	13710916	13711144	1	-	0	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	exon	13710916	13711144	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	intron	13711145	13711219	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	CDS	13711220	13711391	1	-	1	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	exon	13711220	13711391	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	intron	13711392	13711489	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	CDS	13711490	13711533	0.98	-	0	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	exon	13711490	13711533	.	-	.	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
Ledus.S2	AUGUSTUS	start_codon	13711531	13711533	.	-	0	transcript_id "Ledus.S2G183700.t1"; gene_id "Ledus.S2G183700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3009.t1 is derived from g444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5269801	5272248	.	+	.	Ledus.S1G043000
Ledus.S1	AUGUSTUS	transcript	5269801	5272248	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	start_codon	5269801	5269803	.	+	0	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5269801	5269906	0.71	+	0	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5269801	5269906	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5269907	5269985	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5269986	5270043	1	+	2	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5269986	5270043	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5270044	5270129	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5270130	5270157	1	+	1	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5270130	5270157	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5270158	5270250	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5270251	5270297	1	+	0	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5270251	5270297	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5270298	5270384	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5270385	5270475	1	+	1	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5270385	5270475	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5270476	5270561	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5270562	5270739	1	+	0	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5270562	5270739	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5270740	5270877	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5270878	5270965	1	+	2	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5270878	5270965	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5270966	5271053	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5271054	5271126	1	+	1	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5271054	5271126	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5271127	5271211	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5271212	5271290	1	+	0	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5271212	5271290	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5271291	5271442	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5271443	5271510	1	+	2	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5271443	5271510	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5271511	5271595	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5271596	5271665	1	+	0	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5271596	5271665	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5271666	5271755	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5271756	5271843	0.86	+	2	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5271756	5271843	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5271844	5271953	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5271954	5272047	0.81	+	1	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5271954	5272047	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	intron	5272048	5272176	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	CDS	5272177	5272248	0.81	+	0	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	exon	5272177	5272248	.	+	.	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
Ledus.S1	AUGUSTUS	stop_codon	5272249	5272251	.	+	0	transcript_id "Ledus.S1G043000.t1"; gene_id "Ledus.S1G043000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg1126.t1 is derived from g7987.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7748170	7749897	.	-	.	Ledus.S2G100800
Ledus.S2	AUGUSTUS	transcript	7749244	7749897	.	-	.	transcript_id "Ledus.S2G100800.t1"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	stop_codon	7749241	7749243	.	-	0	transcript_id "Ledus.S2G100800.t1"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7749244	7749244	1	-	1	transcript_id "Ledus.S2G100800.t1"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7749244	7749244	.	-	.	transcript_id "Ledus.S2G100800.t1"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	intron	7749245	7749426	.	-	.	transcript_id "Ledus.S2G100800.t1"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7749427	7749596	1	-	0	transcript_id "Ledus.S2G100800.t1"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7749427	7749596	.	-	.	transcript_id "Ledus.S2G100800.t1"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	intron	7749597	7749759	.	-	.	transcript_id "Ledus.S2G100800.t1"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7749760	7749897	0.99	-	0	transcript_id "Ledus.S2G100800.t1"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7749760	7749897	.	-	.	transcript_id "Ledus.S2G100800.t1"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	start_codon	7749895	7749897	.	-	0	transcript_id "Ledus.S2G100800.t1"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	transcript	7748170	7749897	.	-	.	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	stop_codon	7748167	7748169	.	-	0	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7748170	7748376	0.85	-	0	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7748170	7748376	.	-	.	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	intron	7748377	7748492	.	-	.	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7748493	7748899	0.94	-	2	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7748493	7748899	.	-	.	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	intron	7748900	7749093	.	-	.	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7749094	7749119	1	-	1	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7749094	7749119	.	-	.	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	intron	7749120	7749210	.	-	.	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7749211	7749240	0.45	-	1	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7749211	7749240	.	-	.	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	intron	7749241	7749426	.	-	.	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7749427	7749596	1	-	0	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7749427	7749596	.	-	.	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	intron	7749597	7749759	.	-	.	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7749760	7749897	0.99	-	0	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7749760	7749897	.	-	.	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	start_codon	7749895	7749897	.	-	0	transcript_id "Ledus.S2G100800.t2"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	transcript	7748170	7749115	.	-	.	transcript_id "Ledus.S2G100800.t3"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	stop_codon	7748167	7748169	.	-	0	transcript_id "Ledus.S2G100800.t3"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7748170	7748376	0.83	-	0	transcript_id "Ledus.S2G100800.t3"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7748170	7748376	.	-	.	transcript_id "Ledus.S2G100800.t3"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	intron	7748377	7748492	.	-	.	transcript_id "Ledus.S2G100800.t3"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7748493	7748899	0.91	-	2	transcript_id "Ledus.S2G100800.t3"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7748493	7748899	.	-	.	transcript_id "Ledus.S2G100800.t3"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	intron	7748900	7749093	.	-	.	transcript_id "Ledus.S2G100800.t3"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7749094	7749115	0.47	-	0	transcript_id "Ledus.S2G100800.t3"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7749094	7749115	.	-	.	transcript_id "Ledus.S2G100800.t3"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	start_codon	7749113	7749115	.	-	0	transcript_id "Ledus.S2G100800.t3"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	transcript	7748170	7749115	.	-	.	transcript_id "Ledus.S2G100800.t4"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	stop_codon	7748167	7748169	.	-	0	transcript_id "Ledus.S2G100800.t4"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7748170	7748376	0.72	-	0	transcript_id "Ledus.S2G100800.t4"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7748170	7748376	.	-	.	transcript_id "Ledus.S2G100800.t4"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	intron	7748377	7748492	.	-	.	transcript_id "Ledus.S2G100800.t4"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7748493	7748839	0.51	-	2	transcript_id "Ledus.S2G100800.t4"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7748493	7748839	.	-	.	transcript_id "Ledus.S2G100800.t4"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	intron	7748840	7749093	.	-	.	transcript_id "Ledus.S2G100800.t4"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	CDS	7749094	7749115	0.21	-	0	transcript_id "Ledus.S2G100800.t4"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	exon	7749094	7749115	.	-	.	transcript_id "Ledus.S2G100800.t4"; gene_id "Ledus.S2G100800"
Ledus.S2	AUGUSTUS	start_codon	7749113	7749115	.	-	0	transcript_id "Ledus.S2G100800.t4"; gene_id "Ledus.S2G100800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4394.t1 is derived from g1830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16782781	16787089	.	-	.	Ledus.S1G181500
Ledus.S1	AUGUSTUS	transcript	16782781	16787089	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	stop_codon	16782778	16782780	.	-	0	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16782781	16783227	0.99	-	0	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16782781	16783227	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16783228	16783334	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16783335	16784693	0.71	-	0	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16783335	16784693	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16784694	16784809	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16784810	16784908	0.93	-	0	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16784810	16784908	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16784909	16785017	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16785018	16785035	0.92	-	0	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16785018	16785035	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16785036	16785127	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16785128	16785190	0.93	-	0	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16785128	16785190	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16785191	16785393	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16785394	16785477	0.49	-	0	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16785394	16785477	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16785478	16785799	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16785800	16786018	0.93	-	0	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16785800	16786018	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16786019	16786379	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16786380	16786535	1	-	0	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16786380	16786535	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16786536	16786629	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16786630	16786661	1	-	2	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16786630	16786661	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16786662	16786752	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16786753	16786870	1	-	0	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16786753	16786870	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16786871	16786984	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16786985	16787089	0.85	-	0	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16786985	16787089	.	-	.	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	start_codon	16787087	16787089	.	-	0	transcript_id "Ledus.S1G181500.t1"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	transcript	16782781	16787089	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	stop_codon	16782778	16782780	.	-	0	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16782781	16783227	0.99	-	0	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16782781	16783227	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16783228	16783334	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16783335	16784693	0.75	-	0	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16783335	16784693	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16784694	16784809	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16784810	16784908	0.86	-	0	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16784810	16784908	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16784909	16785003	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16785004	16785035	0.81	-	2	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16785004	16785035	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16785036	16785127	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16785128	16785224	0.95	-	0	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16785128	16785224	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16785225	16785393	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16785394	16785477	0.4	-	0	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16785394	16785477	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16785478	16785799	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16785800	16786018	0.97	-	0	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16785800	16786018	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16786019	16786379	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16786380	16786535	1	-	0	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16786380	16786535	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16786536	16786629	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16786630	16786661	1	-	2	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16786630	16786661	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16786662	16786752	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16786753	16786870	1	-	0	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16786753	16786870	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	intron	16786871	16786984	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	CDS	16786985	16787089	0.85	-	0	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	exon	16786985	16787089	.	-	.	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
Ledus.S1	AUGUSTUS	start_codon	16787087	16787089	.	-	0	transcript_id "Ledus.S1G181500.t2"; gene_id "Ledus.S1G181500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9234.t1 is derived from g10264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5531118	5533843	.	+	.	Ledus.S3G071100
Ledus.S3	AUGUSTUS	transcript	5531118	5533843	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	start_codon	5531118	5531120	.	+	0	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	CDS	5531118	5531600	0.77	+	0	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	exon	5531118	5531600	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	intron	5531601	5531681	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	CDS	5531682	5531777	1	+	0	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	exon	5531682	5531777	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	intron	5531778	5531966	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	CDS	5531967	5532155	1	+	0	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	exon	5531967	5532155	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	intron	5532156	5532346	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	CDS	5532347	5532487	0.23	+	0	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	exon	5532347	5532487	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	intron	5532488	5532592	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	CDS	5532593	5532733	0.38	+	0	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	exon	5532593	5532733	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	intron	5532734	5532816	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	CDS	5532817	5532959	1	+	0	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	exon	5532817	5532959	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	intron	5532960	5533053	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	CDS	5533054	5533186	1	+	1	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	exon	5533054	5533186	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	intron	5533187	5533310	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	CDS	5533311	5533359	0.99	+	0	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	exon	5533311	5533359	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	intron	5533360	5533460	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	CDS	5533461	5533843	1	+	2	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	exon	5533461	5533843	.	+	.	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
Ledus.S3	AUGUSTUS	stop_codon	5533844	5533846	.	+	0	transcript_id "Ledus.S3G071100.t1"; gene_id "Ledus.S3G071100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11700.t1 is derived from g5319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6061818	6063860	.	-	.	Ledus.S4G085600
Ledus.S4	AUGUSTUS	transcript	6061818	6063860	.	-	.	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	stop_codon	6061815	6061817	.	-	0	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	CDS	6061818	6061823	0.81	-	0	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	exon	6061818	6061823	.	-	.	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	intron	6061824	6061981	.	-	.	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	CDS	6061982	6062584	0.98	-	0	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	exon	6061982	6062584	.	-	.	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	intron	6062585	6062673	.	-	.	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	CDS	6062674	6063636	0.96	-	0	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	exon	6062674	6063636	.	-	.	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	intron	6063637	6063731	.	-	.	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	CDS	6063732	6063860	0.86	-	0	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	exon	6063732	6063860	.	-	.	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
Ledus.S4	AUGUSTUS	start_codon	6063858	6063860	.	-	0	transcript_id "Ledus.S4G085600.t1"; gene_id "Ledus.S4G085600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg399.t1 is derived from g7260.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2225499	2226092	.	-	.	Ledus.S2G028100
Ledus.S2	AUGUSTUS	transcript	2225499	2226092	.	-	.	transcript_id "Ledus.S2G028100.t1"; gene_id "Ledus.S2G028100"
Ledus.S2	AUGUSTUS	stop_codon	2225496	2225498	.	-	0	transcript_id "Ledus.S2G028100.t1"; gene_id "Ledus.S2G028100"
Ledus.S2	AUGUSTUS	CDS	2225499	2226092	0.94	-	0	transcript_id "Ledus.S2G028100.t1"; gene_id "Ledus.S2G028100"
Ledus.S2	AUGUSTUS	exon	2225499	2226092	.	-	.	transcript_id "Ledus.S2G028100.t1"; gene_id "Ledus.S2G028100"
Ledus.S2	AUGUSTUS	start_codon	2226090	2226092	.	-	0	transcript_id "Ledus.S2G028100.t1"; gene_id "Ledus.S2G028100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9573.t1 is derived from g10603.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7876437	7883266	.	+	.	Ledus.S3G105000
Ledus.S3	AUGUSTUS	transcript	7876437	7883266	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	start_codon	7876437	7876439	.	+	0	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7876437	7876656	1	+	0	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7876437	7876656	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7876657	7876825	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7876826	7876953	1	+	2	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7876826	7876953	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7876954	7877166	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7877167	7877238	1	+	0	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7877167	7877238	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7877239	7877444	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7877445	7877587	1	+	0	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7877445	7877587	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7877588	7877672	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7877673	7877787	1	+	1	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7877673	7877787	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7877788	7877886	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7877887	7877967	1	+	0	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7877887	7877967	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7877968	7878140	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7878141	7878272	1	+	0	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7878141	7878272	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7878273	7878356	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7878357	7878444	1	+	0	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7878357	7878444	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7878445	7878540	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7878541	7878587	0.83	+	2	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7878541	7878587	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7878588	7878947	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7878948	7879022	0.71	+	0	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7878948	7879022	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7879023	7879224	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7879225	7879375	0.68	+	0	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7879225	7879375	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7879376	7879507	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7879508	7879514	0.86	+	2	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7879508	7879514	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7879515	7879675	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7879676	7879718	0.92	+	1	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7879676	7879718	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7879719	7879831	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7879832	7883266	0.97	+	0	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7879832	7883266	.	+	.	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	stop_codon	7883267	7883269	.	+	0	transcript_id "Ledus.S3G105000.t1"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	transcript	7876437	7883266	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	start_codon	7876437	7876439	.	+	0	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7876437	7876656	1	+	0	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7876437	7876656	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7876657	7876825	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7876826	7876953	1	+	2	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7876826	7876953	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7876954	7877166	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7877167	7877238	1	+	0	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7877167	7877238	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7877239	7877444	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7877445	7877587	1	+	0	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7877445	7877587	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7877588	7877672	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7877673	7877787	1	+	1	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7877673	7877787	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7877788	7877886	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7877887	7877967	1	+	0	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7877887	7877967	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7877968	7878140	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7878141	7878272	1	+	0	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7878141	7878272	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7878273	7878356	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7878357	7878444	1	+	0	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7878357	7878444	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7878445	7878540	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7878541	7878587	0.79	+	2	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7878541	7878587	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7878588	7878947	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7878948	7879022	0.74	+	0	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7878948	7879022	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7879023	7879316	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7879317	7879375	0.44	+	0	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7879317	7879375	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7879376	7879675	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7879676	7879718	0.97	+	1	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7879676	7879718	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	intron	7879719	7879831	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	CDS	7879832	7883266	0.94	+	0	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	exon	7879832	7883266	.	+	.	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
Ledus.S3	AUGUSTUS	stop_codon	7883267	7883269	.	+	0	transcript_id "Ledus.S3G105000.t2"; gene_id "Ledus.S3G105000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10220.t1 is derived from g11250.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13642462	13642772	.	+	.	Ledus.S3G169700
Ledus.S3	AUGUSTUS	transcript	13642462	13642772	.	+	.	transcript_id "Ledus.S3G169700.t1"; gene_id "Ledus.S3G169700"
Ledus.S3	AUGUSTUS	start_codon	13642462	13642464	.	+	0	transcript_id "Ledus.S3G169700.t1"; gene_id "Ledus.S3G169700"
Ledus.S3	AUGUSTUS	CDS	13642462	13642682	0.64	+	0	transcript_id "Ledus.S3G169700.t1"; gene_id "Ledus.S3G169700"
Ledus.S3	AUGUSTUS	exon	13642462	13642682	.	+	.	transcript_id "Ledus.S3G169700.t1"; gene_id "Ledus.S3G169700"
Ledus.S3	AUGUSTUS	intron	13642683	13642771	.	+	.	transcript_id "Ledus.S3G169700.t1"; gene_id "Ledus.S3G169700"
Ledus.S3	AUGUSTUS	CDS	13642772	13642772	0.82	+	1	transcript_id "Ledus.S3G169700.t1"; gene_id "Ledus.S3G169700"
Ledus.S3	AUGUSTUS	exon	13642772	13642772	.	+	.	transcript_id "Ledus.S3G169700.t1"; gene_id "Ledus.S3G169700"
Ledus.S3	AUGUSTUS	stop_codon	13642773	13642775	.	+	0	transcript_id "Ledus.S3G169700.t1"; gene_id "Ledus.S3G169700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1640.t1 is derived from g8501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11516479	11517332	.	+	.	Ledus.S2G152200
Ledus.S2	AUGUSTUS	transcript	11516479	11517332	.	+	.	transcript_id "Ledus.S2G152200.t1"; gene_id "Ledus.S2G152200"
Ledus.S2	AUGUSTUS	start_codon	11516479	11516481	.	+	0	transcript_id "Ledus.S2G152200.t1"; gene_id "Ledus.S2G152200"
Ledus.S2	AUGUSTUS	CDS	11516479	11516651	0.49	+	0	transcript_id "Ledus.S2G152200.t1"; gene_id "Ledus.S2G152200"
Ledus.S2	AUGUSTUS	exon	11516479	11516651	.	+	.	transcript_id "Ledus.S2G152200.t1"; gene_id "Ledus.S2G152200"
Ledus.S2	AUGUSTUS	intron	11516652	11516794	.	+	.	transcript_id "Ledus.S2G152200.t1"; gene_id "Ledus.S2G152200"
Ledus.S2	AUGUSTUS	CDS	11516795	11517332	0.57	+	1	transcript_id "Ledus.S2G152200.t1"; gene_id "Ledus.S2G152200"
Ledus.S2	AUGUSTUS	exon	11516795	11517332	.	+	.	transcript_id "Ledus.S2G152200.t1"; gene_id "Ledus.S2G152200"
Ledus.S2	AUGUSTUS	stop_codon	11517333	11517335	.	+	0	transcript_id "Ledus.S2G152200.t1"; gene_id "Ledus.S2G152200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7713.t1 is derived from g12384.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5341692	5345563	.	-	.	Ledus.S5G049100
Ledus.S5	AUGUSTUS	transcript	5341692	5345563	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	stop_codon	5341689	5341691	.	-	0	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5341692	5341883	0.5	-	0	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5341692	5341883	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5341884	5342065	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5342066	5342232	0.39	-	2	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5342066	5342232	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5342233	5342496	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5342497	5342604	0.83	-	2	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5342497	5342604	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5342605	5342734	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5342735	5342876	1	-	0	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5342735	5342876	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5342877	5343107	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5343108	5343453	0.86	-	1	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5343108	5343453	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5343454	5343557	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5343558	5343978	0.97	-	2	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5343558	5343978	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5343979	5344078	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5344079	5344139	0.99	-	0	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5344079	5344139	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5344140	5344290	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5344291	5344322	0.98	-	2	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5344291	5344322	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5344323	5344992	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5344993	5345113	0.36	-	0	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5344993	5345113	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5345114	5345255	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5345256	5345334	0.29	-	1	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5345256	5345334	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5345335	5345471	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5345472	5345563	0.63	-	0	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5345472	5345563	.	-	.	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	start_codon	5345561	5345563	.	-	0	transcript_id "Ledus.S5G049100.t1"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	transcript	5341692	5345563	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	stop_codon	5341689	5341691	.	-	0	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5341692	5341883	0.46	-	0	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5341692	5341883	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5341884	5342065	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5342066	5342232	0.38	-	2	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5342066	5342232	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5342233	5342496	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5342497	5342604	0.86	-	2	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5342497	5342604	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5342605	5342734	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5342735	5342876	1	-	0	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5342735	5342876	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5342877	5343107	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5343108	5343453	0.9	-	1	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5343108	5343453	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5343454	5343557	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5343558	5343978	0.97	-	2	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5343558	5343978	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5343979	5344078	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5344079	5344139	0.98	-	0	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5344079	5344139	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5344140	5344290	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5344291	5344355	0.79	-	2	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5344291	5344355	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5344356	5344992	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5344993	5345113	0.26	-	0	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5344993	5345113	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5345114	5345255	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5345256	5345334	0.24	-	1	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5345256	5345334	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	intron	5345335	5345471	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	CDS	5345472	5345563	0.5	-	0	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	exon	5345472	5345563	.	-	.	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
Ledus.S5	AUGUSTUS	start_codon	5345561	5345563	.	-	0	transcript_id "Ledus.S5G049100.t2"; gene_id "Ledus.S5G049100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5000.t1 is derived from g2438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21082373	21083251	.	+	.	Ledus.S1G242100
Ledus.S1	AUGUSTUS	transcript	21082373	21083251	.	+	.	transcript_id "Ledus.S1G242100.t1"; gene_id "Ledus.S1G242100"
Ledus.S1	AUGUSTUS	start_codon	21082373	21082375	.	+	0	transcript_id "Ledus.S1G242100.t1"; gene_id "Ledus.S1G242100"
Ledus.S1	AUGUSTUS	CDS	21082373	21082797	0.74	+	0	transcript_id "Ledus.S1G242100.t1"; gene_id "Ledus.S1G242100"
Ledus.S1	AUGUSTUS	exon	21082373	21082797	.	+	.	transcript_id "Ledus.S1G242100.t1"; gene_id "Ledus.S1G242100"
Ledus.S1	AUGUSTUS	intron	21082798	21082872	.	+	.	transcript_id "Ledus.S1G242100.t1"; gene_id "Ledus.S1G242100"
Ledus.S1	AUGUSTUS	CDS	21082873	21083251	0.95	+	1	transcript_id "Ledus.S1G242100.t1"; gene_id "Ledus.S1G242100"
Ledus.S1	AUGUSTUS	exon	21082873	21083251	.	+	.	transcript_id "Ledus.S1G242100.t1"; gene_id "Ledus.S1G242100"
Ledus.S1	AUGUSTUS	stop_codon	21083252	21083254	.	+	0	transcript_id "Ledus.S1G242100.t1"; gene_id "Ledus.S1G242100"
# This transcript jg2090.t2 is derived from g8953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2091.t1 is derived from g8954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14694551	14696615	.	+	.	Ledus.S2G197300
Ledus.S2	AUGUSTUS	transcript	14694551	14696615	.	+	.	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	start_codon	14694551	14694553	.	+	0	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	CDS	14694551	14694972	1	+	0	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	exon	14694551	14694972	.	+	.	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	intron	14694973	14695064	.	+	.	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	CDS	14695065	14695284	0.99	+	1	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	exon	14695065	14695284	.	+	.	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	intron	14695285	14695387	.	+	.	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	CDS	14695388	14695690	1	+	0	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	exon	14695388	14695690	.	+	.	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	intron	14695691	14695807	.	+	.	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	CDS	14695808	14696030	1	+	0	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	exon	14695808	14696030	.	+	.	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	intron	14696031	14696124	.	+	.	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	CDS	14696125	14696615	1	+	2	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	exon	14696125	14696615	.	+	.	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
Ledus.S2	AUGUSTUS	stop_codon	14696616	14696618	.	+	0	transcript_id "Ledus.S2G197300.t1"; gene_id "Ledus.S2G197300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2704.t1 is derived from g137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2129623	2130753	.	+	.	Ledus.S1G012500
Ledus.S1	AUGUSTUS	transcript	2129623	2130753	.	+	.	transcript_id "Ledus.S1G012500.t1"; gene_id "Ledus.S1G012500"
Ledus.S1	AUGUSTUS	start_codon	2129623	2129625	.	+	0	transcript_id "Ledus.S1G012500.t1"; gene_id "Ledus.S1G012500"
Ledus.S1	AUGUSTUS	CDS	2129623	2129888	0.4	+	0	transcript_id "Ledus.S1G012500.t1"; gene_id "Ledus.S1G012500"
Ledus.S1	AUGUSTUS	exon	2129623	2129888	.	+	.	transcript_id "Ledus.S1G012500.t1"; gene_id "Ledus.S1G012500"
Ledus.S1	AUGUSTUS	intron	2129889	2130015	.	+	.	transcript_id "Ledus.S1G012500.t1"; gene_id "Ledus.S1G012500"
Ledus.S1	AUGUSTUS	CDS	2130016	2130190	0.23	+	1	transcript_id "Ledus.S1G012500.t1"; gene_id "Ledus.S1G012500"
Ledus.S1	AUGUSTUS	exon	2130016	2130190	.	+	.	transcript_id "Ledus.S1G012500.t1"; gene_id "Ledus.S1G012500"
Ledus.S1	AUGUSTUS	intron	2130191	2130303	.	+	.	transcript_id "Ledus.S1G012500.t1"; gene_id "Ledus.S1G012500"
Ledus.S1	AUGUSTUS	CDS	2130304	2130753	0.29	+	0	transcript_id "Ledus.S1G012500.t1"; gene_id "Ledus.S1G012500"
Ledus.S1	AUGUSTUS	exon	2130304	2130753	.	+	.	transcript_id "Ledus.S1G012500.t1"; gene_id "Ledus.S1G012500"
Ledus.S1	AUGUSTUS	stop_codon	2130754	2130756	.	+	0	transcript_id "Ledus.S1G012500.t1"; gene_id "Ledus.S1G012500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3945.t1 is derived from g1381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13682244	13683010	.	+	.	Ledus.S1G136600
Ledus.S1	AUGUSTUS	transcript	13682244	13683010	.	+	.	transcript_id "Ledus.S1G136600.t1"; gene_id "Ledus.S1G136600"
Ledus.S1	AUGUSTUS	start_codon	13682244	13682246	.	+	0	transcript_id "Ledus.S1G136600.t1"; gene_id "Ledus.S1G136600"
Ledus.S1	AUGUSTUS	CDS	13682244	13682580	1	+	0	transcript_id "Ledus.S1G136600.t1"; gene_id "Ledus.S1G136600"
Ledus.S1	AUGUSTUS	exon	13682244	13682580	.	+	.	transcript_id "Ledus.S1G136600.t1"; gene_id "Ledus.S1G136600"
Ledus.S1	AUGUSTUS	intron	13682581	13682681	.	+	.	transcript_id "Ledus.S1G136600.t1"; gene_id "Ledus.S1G136600"
Ledus.S1	AUGUSTUS	CDS	13682682	13683010	1	+	2	transcript_id "Ledus.S1G136600.t1"; gene_id "Ledus.S1G136600"
Ledus.S1	AUGUSTUS	exon	13682682	13683010	.	+	.	transcript_id "Ledus.S1G136600.t1"; gene_id "Ledus.S1G136600"
Ledus.S1	AUGUSTUS	stop_codon	13683011	13683013	.	+	0	transcript_id "Ledus.S1G136600.t1"; gene_id "Ledus.S1G136600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11185.t1 is derived from g4803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2495933	2497354	.	-	.	Ledus.S4G034100
Ledus.S4	AUGUSTUS	transcript	2495933	2497354	.	-	.	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	stop_codon	2495930	2495932	.	-	0	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	CDS	2495933	2496706	1	-	0	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	exon	2495933	2496706	.	-	.	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	intron	2496707	2496887	.	-	.	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	CDS	2496888	2496990	1	-	1	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	exon	2496888	2496990	.	-	.	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	intron	2496991	2497083	.	-	.	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	CDS	2497084	2497130	1	-	0	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	exon	2497084	2497130	.	-	.	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	intron	2497131	2497300	.	-	.	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	CDS	2497301	2497354	0.65	-	0	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	exon	2497301	2497354	.	-	.	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
Ledus.S4	AUGUSTUS	start_codon	2497352	2497354	.	-	0	transcript_id "Ledus.S4G034100.t1"; gene_id "Ledus.S4G034100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3480.t1 is derived from g915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8655608	8657507	.	+	.	Ledus.S1G090100
Ledus.S1	AUGUSTUS	transcript	8655608	8657507	.	+	.	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	start_codon	8655608	8655610	.	+	0	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	CDS	8655608	8655669	0.57	+	0	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	exon	8655608	8655669	.	+	.	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	intron	8655670	8655975	.	+	.	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	CDS	8655976	8656357	1	+	1	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	exon	8655976	8656357	.	+	.	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	intron	8656358	8656538	.	+	.	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	CDS	8656539	8656735	1	+	0	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	exon	8656539	8656735	.	+	.	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	intron	8656736	8656863	.	+	.	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	CDS	8656864	8657032	0.49	+	1	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	exon	8656864	8657032	.	+	.	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	intron	8657033	8657097	.	+	.	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	CDS	8657098	8657257	0.91	+	0	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	exon	8657098	8657257	.	+	.	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	intron	8657258	8657469	.	+	.	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	CDS	8657470	8657507	1	+	2	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	exon	8657470	8657507	.	+	.	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
Ledus.S1	AUGUSTUS	stop_codon	8657508	8657510	.	+	0	transcript_id "Ledus.S1G090100.t1"; gene_id "Ledus.S1G090100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3935.t1 is derived from g1371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13639007	13639666	.	+	.	Ledus.S1G135600
Ledus.S1	AUGUSTUS	transcript	13639007	13639666	.	+	.	transcript_id "Ledus.S1G135600.t1"; gene_id "Ledus.S1G135600"
Ledus.S1	AUGUSTUS	start_codon	13639007	13639009	.	+	0	transcript_id "Ledus.S1G135600.t1"; gene_id "Ledus.S1G135600"
Ledus.S1	AUGUSTUS	CDS	13639007	13639666	0.71	+	0	transcript_id "Ledus.S1G135600.t1"; gene_id "Ledus.S1G135600"
Ledus.S1	AUGUSTUS	exon	13639007	13639666	.	+	.	transcript_id "Ledus.S1G135600.t1"; gene_id "Ledus.S1G135600"
Ledus.S1	AUGUSTUS	stop_codon	13639667	13639669	.	+	0	transcript_id "Ledus.S1G135600.t1"; gene_id "Ledus.S1G135600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5825.t1 is derived from g3267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27164830	27166858	.	+	.	Ledus.S1G324600
Ledus.S1	AUGUSTUS	transcript	27164830	27166858	.	+	.	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	start_codon	27164830	27164832	.	+	0	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	CDS	27164830	27165567	0.99	+	0	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	exon	27164830	27165567	.	+	.	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	intron	27165568	27165659	.	+	.	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	CDS	27165660	27166279	0.92	+	0	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	exon	27165660	27166279	.	+	.	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	intron	27166280	27166402	.	+	.	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	CDS	27166403	27166497	0.43	+	1	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	exon	27166403	27166497	.	+	.	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	intron	27166498	27166820	.	+	.	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	CDS	27166821	27166858	0.5	+	2	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	exon	27166821	27166858	.	+	.	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
Ledus.S1	AUGUSTUS	stop_codon	27166859	27166861	.	+	0	transcript_id "Ledus.S1G324600.t1"; gene_id "Ledus.S1G324600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11891.t1 is derived from g5510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7567828	7568971	.	-	.	Ledus.S4G104700
Ledus.S4	AUGUSTUS	transcript	7567828	7568971	.	-	.	transcript_id "Ledus.S4G104700.t1"; gene_id "Ledus.S4G104700"
Ledus.S4	AUGUSTUS	stop_codon	7567825	7567827	.	-	0	transcript_id "Ledus.S4G104700.t1"; gene_id "Ledus.S4G104700"
Ledus.S4	AUGUSTUS	CDS	7567828	7568511	1	-	0	transcript_id "Ledus.S4G104700.t1"; gene_id "Ledus.S4G104700"
Ledus.S4	AUGUSTUS	exon	7567828	7568511	.	-	.	transcript_id "Ledus.S4G104700.t1"; gene_id "Ledus.S4G104700"
Ledus.S4	AUGUSTUS	intron	7568512	7568590	.	-	.	transcript_id "Ledus.S4G104700.t1"; gene_id "Ledus.S4G104700"
Ledus.S4	AUGUSTUS	CDS	7568591	7568773	0.87	-	0	transcript_id "Ledus.S4G104700.t1"; gene_id "Ledus.S4G104700"
Ledus.S4	AUGUSTUS	exon	7568591	7568773	.	-	.	transcript_id "Ledus.S4G104700.t1"; gene_id "Ledus.S4G104700"
Ledus.S4	AUGUSTUS	intron	7568774	7568950	.	-	.	transcript_id "Ledus.S4G104700.t1"; gene_id "Ledus.S4G104700"
Ledus.S4	AUGUSTUS	CDS	7568951	7568971	0.84	-	0	transcript_id "Ledus.S4G104700.t1"; gene_id "Ledus.S4G104700"
Ledus.S4	AUGUSTUS	exon	7568951	7568971	.	-	.	transcript_id "Ledus.S4G104700.t1"; gene_id "Ledus.S4G104700"
Ledus.S4	AUGUSTUS	start_codon	7568969	7568971	.	-	0	transcript_id "Ledus.S4G104700.t1"; gene_id "Ledus.S4G104700"
# This transcript jg5342.t2 is derived from g2781.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5343.t1 is derived from g2782.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23483277	23483690	.	+	.	Ledus.S1G276400
Ledus.S1	AUGUSTUS	transcript	23483277	23483690	.	+	.	transcript_id "Ledus.S1G276400.t1"; gene_id "Ledus.S1G276400"
Ledus.S1	AUGUSTUS	start_codon	23483277	23483279	.	+	0	transcript_id "Ledus.S1G276400.t1"; gene_id "Ledus.S1G276400"
Ledus.S1	AUGUSTUS	CDS	23483277	23483690	0.56	+	0	transcript_id "Ledus.S1G276400.t1"; gene_id "Ledus.S1G276400"
Ledus.S1	AUGUSTUS	exon	23483277	23483690	.	+	.	transcript_id "Ledus.S1G276400.t1"; gene_id "Ledus.S1G276400"
Ledus.S1	AUGUSTUS	stop_codon	23483691	23483693	.	+	0	transcript_id "Ledus.S1G276400.t1"; gene_id "Ledus.S1G276400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2574.t1 is derived from g9437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19112644	19112985	.	+	.	Ledus.S2G245600
Ledus.S2	AUGUSTUS	transcript	19112644	19112985	.	+	.	transcript_id "Ledus.S2G245600.t1"; gene_id "Ledus.S2G245600"
Ledus.S2	AUGUSTUS	start_codon	19112644	19112646	.	+	0	transcript_id "Ledus.S2G245600.t1"; gene_id "Ledus.S2G245600"
Ledus.S2	AUGUSTUS	CDS	19112644	19112985	0.85	+	0	transcript_id "Ledus.S2G245600.t1"; gene_id "Ledus.S2G245600"
Ledus.S2	AUGUSTUS	exon	19112644	19112985	.	+	.	transcript_id "Ledus.S2G245600.t1"; gene_id "Ledus.S2G245600"
Ledus.S2	AUGUSTUS	stop_codon	19112986	19112988	.	+	0	transcript_id "Ledus.S2G245600.t1"; gene_id "Ledus.S2G245600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8013.t1 is derived from g12684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8480210	8481529	.	+	.	Ledus.S5G079100
Ledus.S5	AUGUSTUS	transcript	8480210	8481529	.	+	.	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	start_codon	8480210	8480212	.	+	0	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	CDS	8480210	8480434	0.96	+	0	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	exon	8480210	8480434	.	+	.	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	intron	8480435	8480605	.	+	.	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	CDS	8480606	8480744	1	+	0	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	exon	8480606	8480744	.	+	.	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	intron	8480745	8480884	.	+	.	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	CDS	8480885	8481096	1	+	2	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	exon	8480885	8481096	.	+	.	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	intron	8481097	8481188	.	+	.	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	CDS	8481189	8481365	1	+	0	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	exon	8481189	8481365	.	+	.	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	intron	8481366	8481439	.	+	.	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	CDS	8481440	8481529	1	+	0	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	exon	8481440	8481529	.	+	.	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
Ledus.S5	AUGUSTUS	stop_codon	8481530	8481532	.	+	0	transcript_id "Ledus.S5G079100.t1"; gene_id "Ledus.S5G079100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg915.t1 is derived from g7776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6160033	6164500	.	-	.	Ledus.S2G079700
Ledus.S2	AUGUSTUS	transcript	6160033	6164500	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	stop_codon	6160030	6160032	.	-	0	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	CDS	6160033	6160884	0.64	-	0	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	exon	6160033	6160884	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	intron	6160885	6161262	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	CDS	6161263	6161398	0.75	-	1	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	exon	6161263	6161398	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	intron	6161399	6161770	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	CDS	6161771	6161788	0.83	-	1	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	exon	6161771	6161788	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	intron	6161789	6161879	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	CDS	6161880	6162025	1	-	0	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	exon	6161880	6162025	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	intron	6162026	6162101	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	CDS	6162102	6162277	0.97	-	2	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	exon	6162102	6162277	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	intron	6162278	6162386	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	CDS	6162387	6162503	1	-	2	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	exon	6162387	6162503	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	intron	6162504	6162597	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	CDS	6162598	6164500	0.93	-	0	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	exon	6162598	6164500	.	-	.	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
Ledus.S2	AUGUSTUS	start_codon	6164498	6164500	.	-	0	transcript_id "Ledus.S2G079700.t1"; gene_id "Ledus.S2G079700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9253.t1 is derived from g10283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5622508	5622888	.	-	.	Ledus.S3G073000
Ledus.S3	AUGUSTUS	transcript	5622508	5622888	.	-	.	transcript_id "Ledus.S3G073000.t1"; gene_id "Ledus.S3G073000"
Ledus.S3	AUGUSTUS	stop_codon	5622505	5622507	.	-	0	transcript_id "Ledus.S3G073000.t1"; gene_id "Ledus.S3G073000"
Ledus.S3	AUGUSTUS	CDS	5622508	5622888	0.95	-	0	transcript_id "Ledus.S3G073000.t1"; gene_id "Ledus.S3G073000"
Ledus.S3	AUGUSTUS	exon	5622508	5622888	.	-	.	transcript_id "Ledus.S3G073000.t1"; gene_id "Ledus.S3G073000"
Ledus.S3	AUGUSTUS	start_codon	5622886	5622888	.	-	0	transcript_id "Ledus.S3G073000.t1"; gene_id "Ledus.S3G073000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11042.t1 is derived from g4660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1370911	1372912	.	+	.	Ledus.S4G019800
Ledus.S4	AUGUSTUS	transcript	1370911	1372912	.	+	.	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	start_codon	1370911	1370913	.	+	0	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	CDS	1370911	1371494	0.88	+	0	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	exon	1370911	1371494	.	+	.	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	intron	1371495	1371899	.	+	.	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	CDS	1371900	1371969	1	+	1	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	exon	1371900	1371969	.	+	.	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	intron	1371970	1372104	.	+	.	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	CDS	1372105	1372276	1	+	0	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	exon	1372105	1372276	.	+	.	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	intron	1372277	1372363	.	+	.	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	CDS	1372364	1372507	1	+	2	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	exon	1372364	1372507	.	+	.	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	intron	1372508	1372655	.	+	.	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	CDS	1372656	1372912	0.86	+	2	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	exon	1372656	1372912	.	+	.	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
Ledus.S4	AUGUSTUS	stop_codon	1372913	1372915	.	+	0	transcript_id "Ledus.S4G019800.t1"; gene_id "Ledus.S4G019800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12466.t1 is derived from g6087.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12117510	12119511	.	+	.	Ledus.S4G162200
Ledus.S4	AUGUSTUS	transcript	12117510	12119511	.	+	.	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	start_codon	12117510	12117512	.	+	0	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	CDS	12117510	12117811	0.56	+	0	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	exon	12117510	12117811	.	+	.	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	intron	12117812	12117886	.	+	.	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	CDS	12117887	12118141	0.66	+	1	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	exon	12117887	12118141	.	+	.	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	intron	12118142	12118224	.	+	.	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	CDS	12118225	12118332	0.41	+	1	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	exon	12118225	12118332	.	+	.	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	intron	12118333	12118425	.	+	.	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	CDS	12118426	12118526	0.42	+	1	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	exon	12118426	12118526	.	+	.	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	intron	12118527	12118598	.	+	.	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	CDS	12118599	12118798	1	+	2	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	exon	12118599	12118798	.	+	.	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	intron	12118799	12118872	.	+	.	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	CDS	12118873	12119511	1	+	0	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	exon	12118873	12119511	.	+	.	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
Ledus.S4	AUGUSTUS	stop_codon	12119512	12119514	.	+	0	transcript_id "Ledus.S4G162200.t1"; gene_id "Ledus.S4G162200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12141.t1 is derived from g5760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9783203	9785122	.	-	.	Ledus.S4G129700
Ledus.S4	AUGUSTUS	transcript	9783203	9785122	.	-	.	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	stop_codon	9783200	9783202	.	-	0	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	CDS	9783203	9783372	0.81	-	2	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	exon	9783203	9783372	.	-	.	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	intron	9783373	9783476	.	-	.	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	CDS	9783477	9783536	1	-	2	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	exon	9783477	9783536	.	-	.	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	intron	9783537	9783628	.	-	.	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	CDS	9783629	9783728	1	-	0	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	exon	9783629	9783728	.	-	.	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	intron	9783729	9783816	.	-	.	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	CDS	9783817	9783908	0.96	-	2	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	exon	9783817	9783908	.	-	.	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	intron	9783909	9784014	.	-	.	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	CDS	9784015	9784764	1	-	2	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	exon	9784015	9784764	.	-	.	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	intron	9784765	9784842	.	-	.	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	CDS	9784843	9785122	0.99	-	0	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	exon	9784843	9785122	.	-	.	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
Ledus.S4	AUGUSTUS	start_codon	9785120	9785122	.	-	0	transcript_id "Ledus.S4G129700.t1"; gene_id "Ledus.S4G129700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8432.t1 is derived from g13104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11611363	11615583	.	+	.	Ledus.S5G121000
Ledus.S5	AUGUSTUS	transcript	11611363	11615583	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	start_codon	11611363	11611365	.	+	0	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11611363	11611407	0.9	+	0	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11611363	11611407	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11611408	11611485	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11611486	11611618	1	+	0	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11611486	11611618	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11611619	11611699	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11611700	11611772	1	+	2	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11611700	11611772	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11611773	11611885	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11611886	11612020	1	+	1	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11611886	11612020	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612021	11612129	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612130	11612176	0.98	+	1	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612130	11612176	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612177	11612293	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612294	11612352	0.98	+	2	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612294	11612352	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612353	11612456	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612457	11612556	0.97	+	0	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612457	11612556	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612557	11612657	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612658	11612752	1	+	2	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612658	11612752	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612753	11612849	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612850	11612912	1	+	0	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612850	11612912	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612913	11613012	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613013	11613092	1	+	0	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613013	11613092	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11613093	11613177	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613178	11613263	1	+	1	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613178	11613263	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11613264	11613351	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613352	11613436	1	+	2	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613352	11613436	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11613437	11613511	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613512	11613590	0.66	+	1	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613512	11613590	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11613591	11613870	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613871	11614244	0.81	+	0	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613871	11614244	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11614245	11614352	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11614353	11614377	1	+	1	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11614353	11614377	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11614378	11614655	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11614656	11614785	0.45	+	0	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11614656	11614785	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11614786	11614889	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11614890	11615020	0.46	+	2	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11614890	11615020	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11615021	11615103	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11615104	11615192	1	+	0	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11615104	11615192	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11615193	11615289	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11615290	11615366	1	+	1	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11615290	11615366	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11615367	11615452	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11615453	11615583	0.9	+	2	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11615453	11615583	.	+	.	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	stop_codon	11615584	11615586	.	+	0	transcript_id "Ledus.S5G121000.t1"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	transcript	11611363	11615583	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	start_codon	11611363	11611365	.	+	0	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11611363	11611407	0.93	+	0	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11611363	11611407	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11611408	11611485	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11611486	11611618	1	+	0	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11611486	11611618	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11611619	11611699	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11611700	11611772	1	+	2	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11611700	11611772	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11611773	11611870	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11611871	11612020	0.98	+	1	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11611871	11612020	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612021	11612129	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612130	11612176	0.93	+	1	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612130	11612176	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612177	11612293	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612294	11612352	0.97	+	2	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612294	11612352	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612353	11612456	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612457	11612556	0.93	+	0	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612457	11612556	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612557	11612657	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612658	11612752	0.98	+	2	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612658	11612752	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612753	11612849	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612850	11612912	1	+	0	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612850	11612912	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612913	11613012	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613013	11613092	1	+	0	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613013	11613092	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11613093	11613177	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613178	11613263	1	+	1	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613178	11613263	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11613264	11613351	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613352	11613436	1	+	2	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613352	11613436	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11613437	11613511	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613512	11613590	0.73	+	1	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613512	11613590	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11613591	11613870	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613871	11614244	0.8	+	0	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613871	11614244	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11614245	11614352	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11614353	11614377	1	+	1	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11614353	11614377	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11614378	11614655	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11614656	11614785	0.45	+	0	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11614656	11614785	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11614786	11614889	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11614890	11615020	0.45	+	2	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11614890	11615020	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11615021	11615103	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11615104	11615192	1	+	0	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11615104	11615192	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11615193	11615289	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11615290	11615366	1	+	1	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11615290	11615366	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11615367	11615452	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11615453	11615583	0.99	+	2	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11615453	11615583	.	+	.	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	stop_codon	11615584	11615586	.	+	0	transcript_id "Ledus.S5G121000.t2"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	transcript	11611363	11615583	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	start_codon	11611363	11611365	.	+	0	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11611363	11611407	0.92	+	0	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11611363	11611407	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11611408	11611485	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11611486	11611618	0.98	+	0	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11611486	11611618	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11611619	11611696	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11611697	11611772	0.97	+	2	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11611697	11611772	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11611773	11611870	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11611871	11612020	0.99	+	1	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11611871	11612020	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612021	11612129	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612130	11612176	0.94	+	1	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612130	11612176	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612177	11612293	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612294	11612352	0.98	+	2	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612294	11612352	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612353	11612456	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612457	11612556	0.93	+	0	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612457	11612556	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612557	11612657	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612658	11612752	0.98	+	2	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612658	11612752	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612753	11612849	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11612850	11612912	1	+	0	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11612850	11612912	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11612913	11613012	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613013	11613092	1	+	0	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613013	11613092	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11613093	11613177	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613178	11613263	1	+	1	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613178	11613263	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11613264	11613351	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613352	11613436	1	+	2	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613352	11613436	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11613437	11613511	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613512	11613590	0.64	+	1	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613512	11613590	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11613591	11613870	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11613871	11614244	0.77	+	0	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11613871	11614244	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11614245	11614352	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11614353	11614377	1	+	1	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11614353	11614377	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11614378	11614655	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11614656	11614785	0.51	+	0	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11614656	11614785	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11614786	11614889	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11614890	11615020	0.51	+	2	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11614890	11615020	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11615021	11615103	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11615104	11615192	1	+	0	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11615104	11615192	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11615193	11615289	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11615290	11615366	1	+	1	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11615290	11615366	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	intron	11615367	11615452	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	CDS	11615453	11615583	0.94	+	2	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	exon	11615453	11615583	.	+	.	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
Ledus.S5	AUGUSTUS	stop_codon	11615584	11615586	.	+	0	transcript_id "Ledus.S5G121000.t3"; gene_id "Ledus.S5G121000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4918.t1 is derived from g2356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20623923	20625992	.	+	.	Ledus.S1G233900
Ledus.S1	AUGUSTUS	transcript	20623923	20625992	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	start_codon	20623923	20623925	.	+	0	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	CDS	20623923	20624051	0.92	+	0	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	exon	20623923	20624051	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	intron	20624052	20624121	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	CDS	20624122	20624263	1	+	0	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	exon	20624122	20624263	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	intron	20624264	20624352	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	CDS	20624353	20624449	1	+	2	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	exon	20624353	20624449	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	intron	20624450	20624584	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	CDS	20624585	20624654	1	+	1	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	exon	20624585	20624654	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	intron	20624655	20624736	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	CDS	20624737	20624841	1	+	0	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	exon	20624737	20624841	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	intron	20624842	20624994	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	CDS	20624995	20625093	1	+	0	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	exon	20624995	20625093	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	intron	20625094	20625173	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	CDS	20625174	20625264	1	+	0	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	exon	20625174	20625264	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	intron	20625265	20625350	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	CDS	20625351	20625404	0.88	+	2	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	exon	20625351	20625404	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	intron	20625405	20625788	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	CDS	20625789	20625810	0.68	+	2	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	exon	20625789	20625810	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	intron	20625811	20625952	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	CDS	20625953	20625992	0.68	+	1	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	exon	20625953	20625992	.	+	.	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
Ledus.S1	AUGUSTUS	stop_codon	20625993	20625995	.	+	0	transcript_id "Ledus.S1G233900.t1"; gene_id "Ledus.S1G233900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7560.t1 is derived from g12231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4058212	4064469	.	-	.	Ledus.S5G033800
Ledus.S5	AUGUSTUS	transcript	4058212	4064469	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	stop_codon	4058209	4058211	.	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4058212	4058373	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4058212	4058373	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4058374	4058522	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4058523	4058657	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4058523	4058657	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4058658	4058918	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4058919	4059083	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4058919	4059083	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4059084	4059201	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4059202	4059357	0.98	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4059202	4059357	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4059358	4059567	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4059568	4059795	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4059568	4059795	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4059796	4059902	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4059903	4060091	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4059903	4060091	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4060092	4060232	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4060233	4060338	1	-	1	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4060233	4060338	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4060339	4060486	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4060487	4060617	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4060487	4060617	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4060618	4060726	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4060727	4060789	0.99	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4060727	4060789	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4060790	4060953	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4060954	4061032	1	-	1	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4060954	4061032	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4061033	4061128	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4061129	4061304	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4061129	4061304	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4061305	4061415	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4061416	4061523	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4061416	4061523	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4061524	4061640	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4061641	4061700	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4061641	4061700	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4061701	4061800	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4061801	4061857	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4061801	4061857	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4061858	4062066	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4062067	4062186	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4062067	4062186	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4062187	4062285	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4062286	4062429	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4062286	4062429	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4062430	4062616	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4062617	4062761	1	-	1	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4062617	4062761	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4062762	4062881	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4062882	4062983	1	-	1	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4062882	4062983	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4062984	4063114	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4063115	4063182	1	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4063115	4063182	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4063183	4063352	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4063353	4063448	0.99	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4063353	4063448	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4063449	4063564	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4063565	4063692	0.62	-	2	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4063565	4063692	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4063693	4063794	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4063795	4063824	0.74	-	2	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4063795	4063824	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4063825	4063983	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4063984	4064007	1	-	2	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4063984	4064007	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4064008	4064094	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4064095	4064284	0.84	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4064095	4064284	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	intron	4064285	4064388	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	CDS	4064389	4064469	0.77	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	exon	4064389	4064469	.	-	.	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
Ledus.S5	AUGUSTUS	start_codon	4064467	4064469	.	-	0	transcript_id "Ledus.S5G033800.t1"; gene_id "Ledus.S5G033800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4952.t1 is derived from g2390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20859602	20860843	.	+	.	Ledus.S1G237300
Ledus.S1	AUGUSTUS	transcript	20859602	20860843	.	+	.	transcript_id "Ledus.S1G237300.t1"; gene_id "Ledus.S1G237300"
Ledus.S1	AUGUSTUS	start_codon	20859602	20859604	.	+	0	transcript_id "Ledus.S1G237300.t1"; gene_id "Ledus.S1G237300"
Ledus.S1	AUGUSTUS	CDS	20859602	20860843	0.89	+	0	transcript_id "Ledus.S1G237300.t1"; gene_id "Ledus.S1G237300"
Ledus.S1	AUGUSTUS	exon	20859602	20860843	.	+	.	transcript_id "Ledus.S1G237300.t1"; gene_id "Ledus.S1G237300"
Ledus.S1	AUGUSTUS	stop_codon	20860844	20860846	.	+	0	transcript_id "Ledus.S1G237300.t1"; gene_id "Ledus.S1G237300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12407.t1 is derived from g6028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11775854	11776498	.	-	.	Ledus.S4G156300
Ledus.S4	AUGUSTUS	transcript	11775854	11776498	.	-	.	transcript_id "Ledus.S4G156300.t1"; gene_id "Ledus.S4G156300"
Ledus.S4	AUGUSTUS	stop_codon	11775851	11775853	.	-	0	transcript_id "Ledus.S4G156300.t1"; gene_id "Ledus.S4G156300"
Ledus.S4	AUGUSTUS	CDS	11775854	11776498	0.36	-	0	transcript_id "Ledus.S4G156300.t1"; gene_id "Ledus.S4G156300"
Ledus.S4	AUGUSTUS	exon	11775854	11776498	.	-	.	transcript_id "Ledus.S4G156300.t1"; gene_id "Ledus.S4G156300"
Ledus.S4	AUGUSTUS	start_codon	11776496	11776498	.	-	0	transcript_id "Ledus.S4G156300.t1"; gene_id "Ledus.S4G156300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg7059.t1 is derived from g6590.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1134608	1142212	.	+	.	Ledus.C7G012000
Ledus.C7	AUGUSTUS	transcript	1134608	1142212	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	start_codon	1134608	1134610	.	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1134608	1134712	0.62	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1134608	1134712	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1134713	1134816	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1134817	1134891	1	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1134817	1134891	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1134892	1135162	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1135163	1135241	1	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1135163	1135241	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135242	1135566	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1135567	1135631	1	+	2	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1135567	1135631	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135632	1135759	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1135760	1135849	1	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1135760	1135849	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135850	1136043	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136044	1136133	1	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136044	1136133	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136134	1136374	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136375	1136461	1	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136375	1136461	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136462	1136652	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136653	1136736	1	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136653	1136736	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136737	1136950	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136951	1137001	0.96	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136951	1137001	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1137002	1137190	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1137191	1137225	0.66	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1137191	1137225	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1137226	1137350	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1137351	1137483	0.67	+	1	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1137351	1137483	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1137484	1137963	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1137964	1138512	0.99	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1137964	1138512	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1138513	1138680	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1138681	1139129	0.98	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1138681	1139129	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139130	1139241	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1139242	1139305	0.9	+	1	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1139242	1139305	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139306	1139443	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1139444	1139546	0.85	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1139444	1139546	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139547	1139672	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1139673	1139875	0.93	+	2	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1139673	1139875	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139876	1140183	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1140184	1140243	0.8	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1140184	1140243	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1140244	1140422	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1140423	1140493	1	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1140423	1140493	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1140494	1140770	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1140771	1140833	1	+	1	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1140771	1140833	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1140834	1141299	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141300	1141372	1	+	1	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141300	1141372	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1141373	1141588	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141589	1141708	1	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141589	1141708	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1141709	1141790	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141791	1141868	1	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141791	1141868	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1141869	1141950	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141951	1142001	1	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141951	1142001	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1142002	1142086	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1142087	1142212	1	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1142087	1142212	.	+	.	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	stop_codon	1142213	1142215	.	+	0	transcript_id "Ledus.C7G012000.t1"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	transcript	1134608	1142212	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	start_codon	1134608	1134610	.	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1134608	1134712	0.65	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1134608	1134712	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1134713	1134816	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1134817	1134891	0.98	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1134817	1134891	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1134892	1135162	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1135163	1135241	1	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1135163	1135241	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135242	1135566	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1135567	1135631	0.99	+	2	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1135567	1135631	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135632	1135759	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1135760	1135849	1	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1135760	1135849	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135850	1136043	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136044	1136133	1	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136044	1136133	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136134	1136374	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136375	1136461	1	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136375	1136461	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136462	1136652	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136653	1136736	1	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136653	1136736	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136737	1136950	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136951	1136987	0.44	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136951	1136987	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136988	1137190	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1137191	1137225	0.35	+	2	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1137191	1137225	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1137226	1137378	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1137379	1137483	0.48	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1137379	1137483	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1137484	1137963	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1137964	1138512	0.95	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1137964	1138512	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1138513	1138680	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1138681	1139129	1	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1138681	1139129	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139130	1139241	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1139242	1139305	0.97	+	1	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1139242	1139305	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139306	1139443	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1139444	1139546	0.88	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1139444	1139546	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139547	1139672	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1139673	1139875	0.94	+	2	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1139673	1139875	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139876	1140183	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1140184	1140243	0.81	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1140184	1140243	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1140244	1140422	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1140423	1140493	1	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1140423	1140493	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1140494	1140770	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1140771	1140833	1	+	1	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1140771	1140833	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1140834	1141299	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141300	1141372	1	+	1	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141300	1141372	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1141373	1141588	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141589	1141708	1	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141589	1141708	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1141709	1141790	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141791	1141868	1	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141791	1141868	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1141869	1141950	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141951	1142001	1	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141951	1142001	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1142002	1142086	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1142087	1142212	1	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1142087	1142212	.	+	.	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	stop_codon	1142213	1142215	.	+	0	transcript_id "Ledus.C7G012000.t2"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	transcript	1134608	1142212	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	start_codon	1134608	1134610	.	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1134608	1134712	0.72	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1134608	1134712	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1134713	1134816	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1134817	1134891	0.99	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1134817	1134891	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1134892	1135162	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1135163	1135241	1	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1135163	1135241	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135242	1135548	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1135549	1135631	0.99	+	2	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1135549	1135631	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135632	1135759	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1135760	1135849	1	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1135760	1135849	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135850	1136043	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136044	1136133	1	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136044	1136133	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136134	1136374	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136375	1136461	1	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136375	1136461	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136462	1136652	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136653	1136736	1	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136653	1136736	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136737	1136950	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136951	1136987	0.35	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136951	1136987	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136988	1137190	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1137191	1137225	0.2	+	2	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1137191	1137225	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1137226	1137378	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1137379	1137483	0.45	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1137379	1137483	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1137484	1137963	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1137964	1138512	0.98	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1137964	1138512	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1138513	1138680	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1138681	1139129	1	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1138681	1139129	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139130	1139241	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1139242	1139305	0.95	+	1	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1139242	1139305	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139306	1139443	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1139444	1139546	0.86	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1139444	1139546	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139547	1139672	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1139673	1139875	0.91	+	2	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1139673	1139875	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139876	1140183	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1140184	1140243	0.88	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1140184	1140243	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1140244	1140422	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1140423	1140493	1	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1140423	1140493	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1140494	1140770	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1140771	1140833	1	+	1	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1140771	1140833	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1140834	1141299	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141300	1141372	1	+	1	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141300	1141372	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1141373	1141588	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141589	1141708	1	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141589	1141708	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1141709	1141790	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141791	1141868	1	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141791	1141868	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1141869	1141950	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141951	1142001	1	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141951	1142001	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1142002	1142086	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1142087	1142212	1	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1142087	1142212	.	+	.	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	stop_codon	1142213	1142215	.	+	0	transcript_id "Ledus.C7G012000.t3"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	transcript	1134608	1142212	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	start_codon	1134608	1134610	.	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1134608	1134712	0.62	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1134608	1134712	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1134713	1134856	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1134857	1134891	0.73	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1134857	1134891	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1134892	1134988	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1134989	1135004	0.68	+	1	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1134989	1135004	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135005	1135162	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1135163	1135241	0.92	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1135163	1135241	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135242	1135566	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1135567	1135631	1	+	2	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1135567	1135631	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135632	1135759	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1135760	1135849	1	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1135760	1135849	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1135850	1136043	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136044	1136133	1	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136044	1136133	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136134	1136374	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136375	1136461	1	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136375	1136461	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136462	1136652	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136653	1136736	1	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136653	1136736	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136737	1136950	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1136951	1136987	0.36	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1136951	1136987	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1136988	1137190	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1137191	1137225	0.25	+	2	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1137191	1137225	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1137226	1137378	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1137379	1137483	0.41	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1137379	1137483	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1137484	1137963	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1137964	1138512	1	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1137964	1138512	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1138513	1138680	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1138681	1139129	0.99	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1138681	1139129	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139130	1139241	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1139242	1139305	0.93	+	1	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1139242	1139305	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139306	1139443	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1139444	1139546	0.87	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1139444	1139546	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139547	1139672	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1139673	1139875	0.9	+	2	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1139673	1139875	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1139876	1140183	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1140184	1140243	0.83	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1140184	1140243	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1140244	1140422	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1140423	1140493	1	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1140423	1140493	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1140494	1140770	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1140771	1140833	1	+	1	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1140771	1140833	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1140834	1141299	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141300	1141372	1	+	1	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141300	1141372	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1141373	1141588	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141589	1141708	1	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141589	1141708	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1141709	1141790	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141791	1141868	1	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141791	1141868	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1141869	1141950	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1141951	1142001	1	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1141951	1142001	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	intron	1142002	1142086	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	CDS	1142087	1142212	1	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	exon	1142087	1142212	.	+	.	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
Ledus.C7	AUGUSTUS	stop_codon	1142213	1142215	.	+	0	transcript_id "Ledus.C7G012000.t4"; gene_id "Ledus.C7G012000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4823.t1 is derived from g2261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19960250	19960584	.	+	.	Ledus.S1G224400
Ledus.S1	AUGUSTUS	transcript	19960250	19960584	.	+	.	transcript_id "Ledus.S1G224400.t1"; gene_id "Ledus.S1G224400"
Ledus.S1	AUGUSTUS	start_codon	19960250	19960252	.	+	0	transcript_id "Ledus.S1G224400.t1"; gene_id "Ledus.S1G224400"
Ledus.S1	AUGUSTUS	CDS	19960250	19960282	0.67	+	0	transcript_id "Ledus.S1G224400.t1"; gene_id "Ledus.S1G224400"
Ledus.S1	AUGUSTUS	exon	19960250	19960282	.	+	.	transcript_id "Ledus.S1G224400.t1"; gene_id "Ledus.S1G224400"
Ledus.S1	AUGUSTUS	intron	19960283	19960371	.	+	.	transcript_id "Ledus.S1G224400.t1"; gene_id "Ledus.S1G224400"
Ledus.S1	AUGUSTUS	CDS	19960372	19960584	0.86	+	0	transcript_id "Ledus.S1G224400.t1"; gene_id "Ledus.S1G224400"
Ledus.S1	AUGUSTUS	exon	19960372	19960584	.	+	.	transcript_id "Ledus.S1G224400.t1"; gene_id "Ledus.S1G224400"
Ledus.S1	AUGUSTUS	stop_codon	19960585	19960587	.	+	0	transcript_id "Ledus.S1G224400.t1"; gene_id "Ledus.S1G224400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1632.t1 is derived from g8493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11489559	11490569	.	+	.	Ledus.S2G151400
Ledus.S2	AUGUSTUS	transcript	11489559	11490569	.	+	.	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	start_codon	11489559	11489561	.	+	0	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	CDS	11489559	11489684	1	+	0	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	exon	11489559	11489684	.	+	.	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	intron	11489685	11489776	.	+	.	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	CDS	11489777	11489824	1	+	0	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	exon	11489777	11489824	.	+	.	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	intron	11489825	11489958	.	+	.	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	CDS	11489959	11490021	1	+	0	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	exon	11489959	11490021	.	+	.	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	intron	11490022	11490136	.	+	.	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	CDS	11490137	11490190	1	+	0	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	exon	11490137	11490190	.	+	.	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	intron	11490191	11490265	.	+	.	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	CDS	11490266	11490352	1	+	0	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	exon	11490266	11490352	.	+	.	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	intron	11490353	11490446	.	+	.	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	CDS	11490447	11490569	0.69	+	0	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	exon	11490447	11490569	.	+	.	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
Ledus.S2	AUGUSTUS	stop_codon	11490570	11490572	.	+	0	transcript_id "Ledus.S2G151400.t1"; gene_id "Ledus.S2G151400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9042.t1 is derived from g10072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4055272	4055559	.	-	.	Ledus.S3G051900
Ledus.S3	AUGUSTUS	transcript	4055272	4055559	.	-	.	transcript_id "Ledus.S3G051900.t1"; gene_id "Ledus.S3G051900"
Ledus.S3	AUGUSTUS	stop_codon	4055269	4055271	.	-	0	transcript_id "Ledus.S3G051900.t1"; gene_id "Ledus.S3G051900"
Ledus.S3	AUGUSTUS	CDS	4055272	4055559	0.86	-	0	transcript_id "Ledus.S3G051900.t1"; gene_id "Ledus.S3G051900"
Ledus.S3	AUGUSTUS	exon	4055272	4055559	.	-	.	transcript_id "Ledus.S3G051900.t1"; gene_id "Ledus.S3G051900"
Ledus.S3	AUGUSTUS	start_codon	4055557	4055559	.	-	0	transcript_id "Ledus.S3G051900.t1"; gene_id "Ledus.S3G051900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6792.t1 is derived from g4236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34226840	34228317	.	-	.	Ledus.S1G421300
Ledus.S1	AUGUSTUS	transcript	34226840	34228317	.	-	.	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	stop_codon	34226837	34226839	.	-	0	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	CDS	34226840	34226956	0.87	-	0	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	exon	34226840	34226956	.	-	.	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	intron	34226957	34227038	.	-	.	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	CDS	34227039	34227137	0.27	-	0	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	exon	34227039	34227137	.	-	.	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	intron	34227138	34227339	.	-	.	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	CDS	34227340	34227414	0.26	-	0	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	exon	34227340	34227414	.	-	.	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	intron	34227415	34227504	.	-	.	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	CDS	34227505	34227966	1	-	0	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	exon	34227505	34227966	.	-	.	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	intron	34227967	34228062	.	-	.	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	CDS	34228063	34228317	0.96	-	0	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	exon	34228063	34228317	.	-	.	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
Ledus.S1	AUGUSTUS	start_codon	34228315	34228317	.	-	0	transcript_id "Ledus.S1G421300.t1"; gene_id "Ledus.S1G421300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2907.t1 is derived from g342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4518370	4520783	.	+	.	Ledus.S1G032800
Ledus.S1	AUGUSTUS	transcript	4518732	4520783	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	start_codon	4518732	4518734	.	+	0	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4518732	4518754	0.99	+	0	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4518732	4518754	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4518755	4518832	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4518833	4519002	0.99	+	1	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4518833	4519002	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4519003	4519181	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4519182	4519396	0.99	+	2	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4519182	4519396	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4519397	4519528	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4519529	4519599	1	+	0	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4519529	4519599	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4519600	4519692	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4519693	4519855	0.97	+	1	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4519693	4519855	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4519856	4519979	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4519980	4520181	0.97	+	0	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4519980	4520181	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4520182	4520254	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4520255	4520413	1	+	2	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4520255	4520413	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4520414	4520513	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4520514	4520602	1	+	2	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4520514	4520602	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4520603	4520675	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4520676	4520783	1	+	0	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4520676	4520783	.	+	.	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	stop_codon	4520784	4520786	.	+	0	transcript_id "Ledus.S1G032800.t1"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	transcript	4518370	4520783	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	start_codon	4518370	4518372	.	+	0	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4518370	4518754	0.65	+	0	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4518370	4518754	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4518755	4518852	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4518853	4519002	1	+	2	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4518853	4519002	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4519003	4519181	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4519182	4519396	0.98	+	2	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4519182	4519396	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4519397	4519528	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4519529	4519599	0.99	+	0	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4519529	4519599	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4519600	4519692	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4519693	4519855	0.96	+	1	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4519693	4519855	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4519856	4519979	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4519980	4520181	0.96	+	0	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4519980	4520181	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4520182	4520254	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4520255	4520413	1	+	2	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4520255	4520413	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4520414	4520513	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4520514	4520602	1	+	2	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4520514	4520602	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	intron	4520603	4520675	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	CDS	4520676	4520783	1	+	0	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	exon	4520676	4520783	.	+	.	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
Ledus.S1	AUGUSTUS	stop_codon	4520784	4520786	.	+	0	transcript_id "Ledus.S1G032800.t2"; gene_id "Ledus.S1G032800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8699.t1 is derived from g9729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1448677	1451597	.	-	.	Ledus.S3G017600
Ledus.S3	AUGUSTUS	transcript	1448677	1451597	.	-	.	transcript_id "Ledus.S3G017600.t1"; gene_id "Ledus.S3G017600"
Ledus.S3	AUGUSTUS	stop_codon	1448674	1448676	.	-	0	transcript_id "Ledus.S3G017600.t1"; gene_id "Ledus.S3G017600"
Ledus.S3	AUGUSTUS	CDS	1448677	1449683	0.88	-	2	transcript_id "Ledus.S3G017600.t1"; gene_id "Ledus.S3G017600"
Ledus.S3	AUGUSTUS	exon	1448677	1449683	.	-	.	transcript_id "Ledus.S3G017600.t1"; gene_id "Ledus.S3G017600"
Ledus.S3	AUGUSTUS	intron	1449684	1449781	.	-	.	transcript_id "Ledus.S3G017600.t1"; gene_id "Ledus.S3G017600"
Ledus.S3	AUGUSTUS	CDS	1449782	1450378	0.64	-	2	transcript_id "Ledus.S3G017600.t1"; gene_id "Ledus.S3G017600"
Ledus.S3	AUGUSTUS	exon	1449782	1450378	.	-	.	transcript_id "Ledus.S3G017600.t1"; gene_id "Ledus.S3G017600"
Ledus.S3	AUGUSTUS	intron	1450379	1450516	.	-	.	transcript_id "Ledus.S3G017600.t1"; gene_id "Ledus.S3G017600"
Ledus.S3	AUGUSTUS	CDS	1450517	1451597	0.74	-	0	transcript_id "Ledus.S3G017600.t1"; gene_id "Ledus.S3G017600"
Ledus.S3	AUGUSTUS	exon	1450517	1451597	.	-	.	transcript_id "Ledus.S3G017600.t1"; gene_id "Ledus.S3G017600"
Ledus.S3	AUGUSTUS	start_codon	1451595	1451597	.	-	0	transcript_id "Ledus.S3G017600.t1"; gene_id "Ledus.S3G017600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2920.t1 is derived from g355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4586057	4586674	.	+	.	Ledus.S1G034100
Ledus.S1	AUGUSTUS	transcript	4586057	4586674	.	+	.	transcript_id "Ledus.S1G034100.t1"; gene_id "Ledus.S1G034100"
Ledus.S1	AUGUSTUS	start_codon	4586057	4586059	.	+	0	transcript_id "Ledus.S1G034100.t1"; gene_id "Ledus.S1G034100"
Ledus.S1	AUGUSTUS	CDS	4586057	4586674	0.96	+	0	transcript_id "Ledus.S1G034100.t1"; gene_id "Ledus.S1G034100"
Ledus.S1	AUGUSTUS	exon	4586057	4586674	.	+	.	transcript_id "Ledus.S1G034100.t1"; gene_id "Ledus.S1G034100"
Ledus.S1	AUGUSTUS	stop_codon	4586675	4586677	.	+	0	transcript_id "Ledus.S1G034100.t1"; gene_id "Ledus.S1G034100"
# This transcript jg8275.t2 is derived from g12946.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8276.t1 is derived from g12947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10359621	10360112	.	+	.	Ledus.S5G105400
Ledus.S5	AUGUSTUS	transcript	10359621	10360112	.	+	.	transcript_id "Ledus.S5G105400.t1"; gene_id "Ledus.S5G105400"
Ledus.S5	AUGUSTUS	start_codon	10359621	10359623	.	+	0	transcript_id "Ledus.S5G105400.t1"; gene_id "Ledus.S5G105400"
Ledus.S5	AUGUSTUS	CDS	10359621	10360112	0.73	+	0	transcript_id "Ledus.S5G105400.t1"; gene_id "Ledus.S5G105400"
Ledus.S5	AUGUSTUS	exon	10359621	10360112	.	+	.	transcript_id "Ledus.S5G105400.t1"; gene_id "Ledus.S5G105400"
Ledus.S5	AUGUSTUS	stop_codon	10360113	10360115	.	+	0	transcript_id "Ledus.S5G105400.t1"; gene_id "Ledus.S5G105400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1064.t1 is derived from g7925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7208173	7209444	.	+	.	Ledus.S2G094600
Ledus.S2	AUGUSTUS	transcript	7208173	7209444	.	+	.	transcript_id "Ledus.S2G094600.t1"; gene_id "Ledus.S2G094600"
Ledus.S2	AUGUSTUS	start_codon	7208173	7208175	.	+	0	transcript_id "Ledus.S2G094600.t1"; gene_id "Ledus.S2G094600"
Ledus.S2	AUGUSTUS	CDS	7208173	7209444	1	+	0	transcript_id "Ledus.S2G094600.t1"; gene_id "Ledus.S2G094600"
Ledus.S2	AUGUSTUS	exon	7208173	7209444	.	+	.	transcript_id "Ledus.S2G094600.t1"; gene_id "Ledus.S2G094600"
Ledus.S2	AUGUSTUS	stop_codon	7209445	7209447	.	+	0	transcript_id "Ledus.S2G094600.t1"; gene_id "Ledus.S2G094600"
# This transcript jg7735.t2 is derived from g12406.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7735.t3 is derived from g12406.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7736.t1 is derived from g12407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5715055	5716710	.	+	.	Ledus.S5G051400
Ledus.S5	AUGUSTUS	transcript	5715055	5716710	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	start_codon	5715055	5715057	.	+	0	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	CDS	5715055	5715114	0.87	+	0	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	exon	5715055	5715114	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	intron	5715115	5715203	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	CDS	5715204	5715369	1	+	0	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	exon	5715204	5715369	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	intron	5715370	5715447	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	CDS	5715448	5715512	1	+	2	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	exon	5715448	5715512	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	intron	5715513	5715665	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	CDS	5715666	5716055	0.63	+	0	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	exon	5715666	5716055	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	intron	5716056	5716142	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	CDS	5716143	5716201	1	+	0	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	exon	5716143	5716201	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	intron	5716202	5716290	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	CDS	5716291	5716395	1	+	1	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	exon	5716291	5716395	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	intron	5716396	5716472	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	CDS	5716473	5716710	1	+	1	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	exon	5716473	5716710	.	+	.	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
Ledus.S5	AUGUSTUS	stop_codon	5716711	5716713	.	+	0	transcript_id "Ledus.S5G051400.t1"; gene_id "Ledus.S5G051400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1360.t1 is derived from g8221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9459312	9463774	.	-	.	Ledus.S2G124200
Ledus.S2	AUGUSTUS	transcript	9459312	9463774	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	stop_codon	9459309	9459311	.	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9459312	9459485	1	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9459312	9459485	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9459486	9459621	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9459622	9459789	1	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9459622	9459789	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9459790	9459894	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9459895	9460131	1	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9459895	9460131	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9460132	9460269	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9460270	9460589	1	-	2	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9460270	9460589	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9460590	9460674	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9460675	9461095	1	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9460675	9461095	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9461096	9461226	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9461227	9461322	1	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9461227	9461322	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9461323	9461465	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9461466	9461478	1	-	1	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9461466	9461478	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9461479	9461849	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9461850	9461923	0.99	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9461850	9461923	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9461924	9462014	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9462015	9462164	0.99	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9462015	9462164	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9462165	9462247	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9462248	9462318	1	-	2	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9462248	9462318	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9462319	9462394	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9462395	9462485	1	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9462395	9462485	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9462486	9462576	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9462577	9462696	0.95	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9462577	9462696	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9462697	9462808	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9462809	9462946	0.72	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9462809	9462946	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9462947	9463143	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9463144	9463225	1	-	1	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9463144	9463225	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9463226	9463331	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9463332	9463435	0.97	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9463332	9463435	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9463436	9463513	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9463514	9463590	0.67	-	2	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9463514	9463590	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	intron	9463591	9463698	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	CDS	9463699	9463774	0.75	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	exon	9463699	9463774	.	-	.	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
Ledus.S2	AUGUSTUS	start_codon	9463772	9463774	.	-	0	transcript_id "Ledus.S2G124200.t1"; gene_id "Ledus.S2G124200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10006.t1 is derived from g11036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11815874	11817498	.	+	.	Ledus.S3G148300
Ledus.S3	AUGUSTUS	transcript	11815874	11817498	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	start_codon	11815874	11815876	.	+	0	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	CDS	11815874	11815882	1	+	0	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	exon	11815874	11815882	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	intron	11815883	11816021	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	CDS	11816022	11816147	1	+	0	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	exon	11816022	11816147	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	intron	11816148	11816237	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	CDS	11816238	11816363	1	+	0	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	exon	11816238	11816363	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	intron	11816364	11816437	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	CDS	11816438	11816595	1	+	0	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	exon	11816438	11816595	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	intron	11816596	11816670	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	CDS	11816671	11816773	1	+	1	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	exon	11816671	11816773	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	intron	11816774	11816861	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	CDS	11816862	11816957	1	+	0	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	exon	11816862	11816957	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	intron	11816958	11817036	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	CDS	11817037	11817102	1	+	0	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	exon	11817037	11817102	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	intron	11817103	11817206	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	CDS	11817207	11817326	0.99	+	0	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	exon	11817207	11817326	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	intron	11817327	11817408	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	CDS	11817409	11817498	1	+	0	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	exon	11817409	11817498	.	+	.	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
Ledus.S3	AUGUSTUS	stop_codon	11817499	11817501	.	+	0	transcript_id "Ledus.S3G148300.t1"; gene_id "Ledus.S3G148300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9083.t1 is derived from g10113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4439727	4440260	.	+	.	Ledus.S3G056000
Ledus.S3	AUGUSTUS	transcript	4439727	4440260	.	+	.	transcript_id "Ledus.S3G056000.t1"; gene_id "Ledus.S3G056000"
Ledus.S3	AUGUSTUS	start_codon	4439727	4439729	.	+	0	transcript_id "Ledus.S3G056000.t1"; gene_id "Ledus.S3G056000"
Ledus.S3	AUGUSTUS	CDS	4439727	4439776	0.97	+	0	transcript_id "Ledus.S3G056000.t1"; gene_id "Ledus.S3G056000"
Ledus.S3	AUGUSTUS	exon	4439727	4439776	.	+	.	transcript_id "Ledus.S3G056000.t1"; gene_id "Ledus.S3G056000"
Ledus.S3	AUGUSTUS	intron	4439777	4439935	.	+	.	transcript_id "Ledus.S3G056000.t1"; gene_id "Ledus.S3G056000"
Ledus.S3	AUGUSTUS	CDS	4439936	4440260	1	+	1	transcript_id "Ledus.S3G056000.t1"; gene_id "Ledus.S3G056000"
Ledus.S3	AUGUSTUS	exon	4439936	4440260	.	+	.	transcript_id "Ledus.S3G056000.t1"; gene_id "Ledus.S3G056000"
Ledus.S3	AUGUSTUS	stop_codon	4440261	4440263	.	+	0	transcript_id "Ledus.S3G056000.t1"; gene_id "Ledus.S3G056000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12331.t1 is derived from g5952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11232339	11233471	.	+	.	Ledus.S4G148700
Ledus.S4	AUGUSTUS	transcript	11232339	11233471	.	+	.	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	start_codon	11232339	11232341	.	+	0	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	CDS	11232339	11232425	0.56	+	0	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	exon	11232339	11232425	.	+	.	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	intron	11232426	11232554	.	+	.	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	CDS	11232555	11232638	1	+	0	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	exon	11232555	11232638	.	+	.	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	intron	11232639	11232758	.	+	.	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	CDS	11232759	11232918	1	+	0	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	exon	11232759	11232918	.	+	.	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	intron	11232919	11233000	.	+	.	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	CDS	11233001	11233056	1	+	2	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	exon	11233001	11233056	.	+	.	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	intron	11233057	11233161	.	+	.	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	CDS	11233162	11233233	1	+	0	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	exon	11233162	11233233	.	+	.	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	intron	11233234	11233318	.	+	.	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	CDS	11233319	11233471	0.98	+	0	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	exon	11233319	11233471	.	+	.	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
Ledus.S4	AUGUSTUS	stop_codon	11233472	11233474	.	+	0	transcript_id "Ledus.S4G148700.t1"; gene_id "Ledus.S4G148700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1646.t1 is derived from g8507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11545254	11545463	.	+	.	Ledus.S2G152800
Ledus.S2	AUGUSTUS	transcript	11545254	11545463	.	+	.	transcript_id "Ledus.S2G152800.t1"; gene_id "Ledus.S2G152800"
Ledus.S2	AUGUSTUS	start_codon	11545254	11545256	.	+	0	transcript_id "Ledus.S2G152800.t1"; gene_id "Ledus.S2G152800"
Ledus.S2	AUGUSTUS	CDS	11545254	11545463	0.59	+	0	transcript_id "Ledus.S2G152800.t1"; gene_id "Ledus.S2G152800"
Ledus.S2	AUGUSTUS	exon	11545254	11545463	.	+	.	transcript_id "Ledus.S2G152800.t1"; gene_id "Ledus.S2G152800"
Ledus.S2	AUGUSTUS	stop_codon	11545464	11545466	.	+	0	transcript_id "Ledus.S2G152800.t1"; gene_id "Ledus.S2G152800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7213.t1 is derived from g6744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2238520	2244741	.	-	.	Ledus.C7G027400
Ledus.C7	AUGUSTUS	transcript	2238520	2244741	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	stop_codon	2238517	2238519	.	-	0	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2238520	2238557	0.7	-	2	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2238520	2238557	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2238558	2238651	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2238652	2238735	0.72	-	2	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2238652	2238735	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2238736	2239062	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2239063	2239107	1	-	2	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2239063	2239107	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2239108	2239205	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2239206	2239299	0.42	-	0	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2239206	2239299	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2239300	2239405	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2239406	2239421	0.23	-	1	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2239406	2239421	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2239422	2239540	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2239541	2239731	1	-	0	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2239541	2239731	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2239732	2239866	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2239867	2241035	0.24	-	2	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2239867	2241035	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2241036	2241197	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2241198	2241360	1	-	0	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2241198	2241360	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2241361	2241619	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2241620	2241695	1	-	1	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2241620	2241695	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2241696	2242035	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2242036	2242158	1	-	1	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2242036	2242158	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2242159	2242245	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2242246	2242410	0.98	-	1	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2242246	2242410	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2242411	2242526	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2242527	2242617	0.99	-	2	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2242527	2242617	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2242618	2242713	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2242714	2242798	1	-	0	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2242714	2242798	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2242799	2242950	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2242951	2243103	1	-	0	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2242951	2243103	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2243104	2243271	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2243272	2243328	0.98	-	0	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2243272	2243328	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2243329	2243445	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2243446	2243550	0.98	-	0	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2243446	2243550	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2243551	2243906	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2243907	2244019	1	-	2	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2243907	2244019	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	intron	2244020	2244680	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	CDS	2244681	2244741	0.87	-	0	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	exon	2244681	2244741	.	-	.	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
Ledus.C7	AUGUSTUS	start_codon	2244739	2244741	.	-	0	transcript_id "Ledus.C7G027400.t1"; gene_id "Ledus.C7G027400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8177.t1 is derived from g12848.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9687895	9688230	.	+	.	Ledus.S5G095500
Ledus.S5	AUGUSTUS	transcript	9687895	9688230	.	+	.	transcript_id "Ledus.S5G095500.t1"; gene_id "Ledus.S5G095500"
Ledus.S5	AUGUSTUS	start_codon	9687895	9687897	.	+	0	transcript_id "Ledus.S5G095500.t1"; gene_id "Ledus.S5G095500"
Ledus.S5	AUGUSTUS	CDS	9687895	9688230	0.95	+	0	transcript_id "Ledus.S5G095500.t1"; gene_id "Ledus.S5G095500"
Ledus.S5	AUGUSTUS	exon	9687895	9688230	.	+	.	transcript_id "Ledus.S5G095500.t1"; gene_id "Ledus.S5G095500"
Ledus.S5	AUGUSTUS	stop_codon	9688231	9688233	.	+	0	transcript_id "Ledus.S5G095500.t1"; gene_id "Ledus.S5G095500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6446.t1 is derived from g3889.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31277531	31279092	.	+	.	Ledus.S1G386700
Ledus.S1	AUGUSTUS	transcript	31277531	31279092	.	+	.	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	start_codon	31277531	31277533	.	+	0	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	CDS	31277531	31277578	1	+	0	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	exon	31277531	31277578	.	+	.	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	intron	31277579	31278082	.	+	.	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	CDS	31278083	31278159	1	+	0	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	exon	31278083	31278159	.	+	.	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	intron	31278160	31278315	.	+	.	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	CDS	31278316	31278400	1	+	1	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	exon	31278316	31278400	.	+	.	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	intron	31278401	31278579	.	+	.	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	CDS	31278580	31279092	1	+	0	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	exon	31278580	31279092	.	+	.	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	stop_codon	31279093	31279095	.	+	0	transcript_id "Ledus.S1G386700.t1"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	transcript	31277531	31279092	.	+	.	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	start_codon	31277531	31277533	.	+	0	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	CDS	31277531	31277578	1	+	0	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	exon	31277531	31277578	.	+	.	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	intron	31277579	31278082	.	+	.	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	CDS	31278083	31278159	1	+	0	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	exon	31278083	31278159	.	+	.	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	intron	31278160	31278315	.	+	.	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	CDS	31278316	31278400	1	+	1	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	exon	31278316	31278400	.	+	.	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	intron	31278401	31278585	.	+	.	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	CDS	31278586	31279092	1	+	0	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	exon	31278586	31279092	.	+	.	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
Ledus.S1	AUGUSTUS	stop_codon	31279093	31279095	.	+	0	transcript_id "Ledus.S1G386700.t2"; gene_id "Ledus.S1G386700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3645.t1 is derived from g1081.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10367819	10368877	.	-	.	Ledus.S1G106600
Ledus.S1	AUGUSTUS	transcript	10367819	10368877	.	-	.	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	stop_codon	10367816	10367818	.	-	0	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	CDS	10367819	10368283	0.78	-	0	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	exon	10367819	10368283	.	-	.	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	intron	10368284	10368397	.	-	.	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	CDS	10368398	10368472	0.43	-	0	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	exon	10368398	10368472	.	-	.	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	intron	10368473	10368560	.	-	.	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	CDS	10368561	10368628	0.43	-	2	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	exon	10368561	10368628	.	-	.	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	intron	10368629	10368750	.	-	.	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	CDS	10368751	10368877	0.56	-	0	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	exon	10368751	10368877	.	-	.	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
Ledus.S1	AUGUSTUS	start_codon	10368875	10368877	.	-	0	transcript_id "Ledus.S1G106600.t1"; gene_id "Ledus.S1G106600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7171.t1 is derived from g6702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1944963	1945992	.	-	.	Ledus.C7G023200
Ledus.C7	AUGUSTUS	transcript	1944963	1945992	.	-	.	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	stop_codon	1944960	1944962	.	-	0	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	CDS	1944963	1945155	1	-	1	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	exon	1944963	1945155	.	-	.	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	intron	1945156	1945270	.	-	.	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	CDS	1945271	1945466	1	-	2	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	exon	1945271	1945466	.	-	.	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	intron	1945467	1945548	.	-	.	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	CDS	1945549	1945591	1	-	0	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	exon	1945549	1945591	.	-	.	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	intron	1945592	1945671	.	-	.	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	CDS	1945672	1945992	0.94	-	0	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	exon	1945672	1945992	.	-	.	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
Ledus.C7	AUGUSTUS	start_codon	1945990	1945992	.	-	0	transcript_id "Ledus.C7G023200.t1"; gene_id "Ledus.C7G023200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11874.t1 is derived from g5493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7470373	7470889	.	-	.	Ledus.S4G103000
Ledus.S4	AUGUSTUS	transcript	7470373	7470889	.	-	.	transcript_id "Ledus.S4G103000.t1"; gene_id "Ledus.S4G103000"
Ledus.S4	AUGUSTUS	stop_codon	7470370	7470372	.	-	0	transcript_id "Ledus.S4G103000.t1"; gene_id "Ledus.S4G103000"
Ledus.S4	AUGUSTUS	CDS	7470373	7470624	0.74	-	0	transcript_id "Ledus.S4G103000.t1"; gene_id "Ledus.S4G103000"
Ledus.S4	AUGUSTUS	exon	7470373	7470624	.	-	.	transcript_id "Ledus.S4G103000.t1"; gene_id "Ledus.S4G103000"
Ledus.S4	AUGUSTUS	intron	7470625	7470736	.	-	.	transcript_id "Ledus.S4G103000.t1"; gene_id "Ledus.S4G103000"
Ledus.S4	AUGUSTUS	CDS	7470737	7470889	0.34	-	0	transcript_id "Ledus.S4G103000.t1"; gene_id "Ledus.S4G103000"
Ledus.S4	AUGUSTUS	exon	7470737	7470889	.	-	.	transcript_id "Ledus.S4G103000.t1"; gene_id "Ledus.S4G103000"
Ledus.S4	AUGUSTUS	start_codon	7470887	7470889	.	-	0	transcript_id "Ledus.S4G103000.t1"; gene_id "Ledus.S4G103000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1811.t1 is derived from g8674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12715152	12718563	.	-	.	Ledus.S2G169300
Ledus.S2	AUGUSTUS	transcript	12715152	12718563	.	-	.	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	stop_codon	12715149	12715151	.	-	0	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	CDS	12715152	12715230	0.83	-	1	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	exon	12715152	12715230	.	-	.	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	intron	12715231	12715340	.	-	.	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	CDS	12715341	12715413	0.85	-	2	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	exon	12715341	12715413	.	-	.	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	intron	12715414	12715487	.	-	.	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	CDS	12715488	12715523	0.98	-	2	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	exon	12715488	12715523	.	-	.	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	intron	12715524	12715674	.	-	.	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	CDS	12715675	12717697	0.95	-	0	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	exon	12715675	12717697	.	-	.	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	intron	12717698	12717792	.	-	.	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	CDS	12717793	12718563	0.54	-	0	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	exon	12717793	12718563	.	-	.	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
Ledus.S2	AUGUSTUS	start_codon	12718561	12718563	.	-	0	transcript_id "Ledus.S2G169300.t1"; gene_id "Ledus.S2G169300"
# This transcript jg1852.t2 is derived from g8715.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1853.t1 is derived from g8716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12962420	12963898	.	-	.	Ledus.S2G173500
Ledus.S2	AUGUSTUS	transcript	12962420	12963898	.	-	.	transcript_id "Ledus.S2G173500.t1"; gene_id "Ledus.S2G173500"
Ledus.S2	AUGUSTUS	stop_codon	12962417	12962419	.	-	0	transcript_id "Ledus.S2G173500.t1"; gene_id "Ledus.S2G173500"
Ledus.S2	AUGUSTUS	CDS	12962420	12963898	0.87	-	0	transcript_id "Ledus.S2G173500.t1"; gene_id "Ledus.S2G173500"
Ledus.S2	AUGUSTUS	exon	12962420	12963898	.	-	.	transcript_id "Ledus.S2G173500.t1"; gene_id "Ledus.S2G173500"
Ledus.S2	AUGUSTUS	start_codon	12963896	12963898	.	-	0	transcript_id "Ledus.S2G173500.t1"; gene_id "Ledus.S2G173500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12997.t1 is derived from g6807.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2145963	2147593	.	-	.	Ledus.S6G005900
Ledus.S6	AUGUSTUS	transcript	2145963	2147593	.	-	.	transcript_id "Ledus.S6G005900.t1"; gene_id "Ledus.S6G005900"
Ledus.S6	AUGUSTUS	stop_codon	2145960	2145962	.	-	0	transcript_id "Ledus.S6G005900.t1"; gene_id "Ledus.S6G005900"
Ledus.S6	AUGUSTUS	CDS	2145963	2146274	0.01	-	0	transcript_id "Ledus.S6G005900.t1"; gene_id "Ledus.S6G005900"
Ledus.S6	AUGUSTUS	exon	2145963	2146274	.	-	.	transcript_id "Ledus.S6G005900.t1"; gene_id "Ledus.S6G005900"
Ledus.S6	AUGUSTUS	intron	2146275	2147470	.	-	.	transcript_id "Ledus.S6G005900.t1"; gene_id "Ledus.S6G005900"
Ledus.S6	AUGUSTUS	CDS	2147471	2147593	0.04	-	0	transcript_id "Ledus.S6G005900.t1"; gene_id "Ledus.S6G005900"
Ledus.S6	AUGUSTUS	exon	2147471	2147593	.	-	.	transcript_id "Ledus.S6G005900.t1"; gene_id "Ledus.S6G005900"
Ledus.S6	AUGUSTUS	start_codon	2147591	2147593	.	-	0	transcript_id "Ledus.S6G005900.t1"; gene_id "Ledus.S6G005900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg228.t1 is derived from g7089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1005095	1007963	.	+	.	Ledus.S2G011000
Ledus.S2	AUGUSTUS	transcript	1005095	1007963	.	+	.	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	start_codon	1005095	1005097	.	+	0	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	CDS	1005095	1005237	0.32	+	0	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	exon	1005095	1005237	.	+	.	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	intron	1005238	1005347	.	+	.	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	CDS	1005348	1005452	0.99	+	1	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	exon	1005348	1005452	.	+	.	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	intron	1005453	1005536	.	+	.	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	CDS	1005537	1007142	0.64	+	1	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	exon	1005537	1007142	.	+	.	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	intron	1007143	1007335	.	+	.	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	CDS	1007336	1007432	0.54	+	0	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	exon	1007336	1007432	.	+	.	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	intron	1007433	1007614	.	+	.	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	CDS	1007615	1007657	0.62	+	2	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	exon	1007615	1007657	.	+	.	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	intron	1007658	1007839	.	+	.	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	CDS	1007840	1007963	0.36	+	1	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	exon	1007840	1007963	.	+	.	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
Ledus.S2	AUGUSTUS	stop_codon	1007964	1007966	.	+	0	transcript_id "Ledus.S2G011000.t1"; gene_id "Ledus.S2G011000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg355.t1 is derived from g7216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1918408	1922259	.	-	.	Ledus.S2G023700
Ledus.S2	AUGUSTUS	transcript	1918408	1922259	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	stop_codon	1918405	1918407	.	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1918408	1918708	1	-	1	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1918408	1918708	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1918709	1918801	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1918802	1918902	1	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1918802	1918902	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1918903	1918980	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1918981	1919130	1	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1918981	1919130	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1919131	1919252	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1919253	1919369	0.99	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1919253	1919369	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1919370	1919470	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1919471	1919542	0.99	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1919471	1919542	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1919543	1919645	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1919646	1919756	0.98	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1919646	1919756	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1919757	1919867	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1919868	1919966	0.99	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1919868	1919966	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1919967	1920075	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1920076	1920135	1	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1920076	1920135	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1920136	1920233	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1920234	1920377	0.99	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1920234	1920377	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1920378	1920618	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1920619	1921026	0.94	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1920619	1921026	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1921027	1921147	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1921148	1921202	1	-	1	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1921148	1921202	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1921203	1921304	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1921305	1921389	1	-	2	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1921305	1921389	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1921390	1921467	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1921468	1921575	1	-	2	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1921468	1921575	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1921576	1921687	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1921688	1921778	0.97	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1921688	1921778	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1921779	1921899	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1921900	1922076	1	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1921900	1922076	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1922077	1922244	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1922245	1922259	0.96	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1922245	1922259	.	-	.	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	start_codon	1922257	1922259	.	-	0	transcript_id "Ledus.S2G023700.t1"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	transcript	1918408	1922259	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	stop_codon	1918405	1918407	.	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1918408	1918708	1	-	1	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1918408	1918708	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1918709	1918801	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1918802	1918902	1	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1918802	1918902	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1918903	1918980	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1918981	1919130	1	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1918981	1919130	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1919131	1919252	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1919253	1919369	1	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1919253	1919369	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1919370	1919470	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1919471	1919542	1	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1919471	1919542	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1919543	1919645	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1919646	1919756	0.94	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1919646	1919756	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1919757	1919867	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1919868	1919966	1	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1919868	1919966	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1919967	1920075	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1920076	1920135	1	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1920076	1920135	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1920136	1920296	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1920297	1920377	1	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1920297	1920377	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1920378	1920618	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1920619	1921026	0.96	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1920619	1921026	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1921027	1921147	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1921148	1921202	1	-	1	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1921148	1921202	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1921203	1921304	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1921305	1921389	1	-	2	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1921305	1921389	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1921390	1921467	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1921468	1921575	0.99	-	2	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1921468	1921575	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1921576	1921687	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1921688	1921778	1	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1921688	1921778	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1921779	1921899	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1921900	1922076	1	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1921900	1922076	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	intron	1922077	1922244	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	CDS	1922245	1922259	0.94	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	exon	1922245	1922259	.	-	.	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
Ledus.S2	AUGUSTUS	start_codon	1922257	1922259	.	-	0	transcript_id "Ledus.S2G023700.t2"; gene_id "Ledus.S2G023700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1133.t1 is derived from g7994.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7854282	7858036	.	-	.	Ledus.S2G101500
Ledus.S2	AUGUSTUS	transcript	7854282	7858036	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	stop_codon	7854279	7854281	.	-	0	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7854282	7854420	1	-	1	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7854282	7854420	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7854421	7854509	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7854510	7854576	1	-	2	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7854510	7854576	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7854577	7854667	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7854668	7854788	1	-	0	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7854668	7854788	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7854789	7854929	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7854930	7855009	1	-	2	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7854930	7855009	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7855010	7855105	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7855106	7855218	1	-	1	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7855106	7855218	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7855219	7855305	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7855306	7855430	0.97	-	0	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7855306	7855430	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7855431	7855550	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7855551	7855619	0.98	-	0	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7855551	7855619	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7855620	7855718	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7855719	7855793	1	-	0	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7855719	7855793	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7855794	7855937	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7855938	7855997	1	-	0	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7855938	7855997	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7855998	7856088	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7856089	7856176	1	-	1	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7856089	7856176	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7856177	7856311	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7856312	7856394	1	-	0	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7856312	7856394	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7856395	7856501	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7856502	7856552	0.93	-	0	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7856502	7856552	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7856553	7856654	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7856655	7856712	1	-	1	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7856655	7856712	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7856713	7856958	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7856959	7857138	1	-	1	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7856959	7857138	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7857139	7857250	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7857251	7857412	1	-	1	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7857251	7857412	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7857413	7857494	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7857495	7857695	1	-	1	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7857495	7857695	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7857696	7857929	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7857930	7858036	0.97	-	0	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7857930	7858036	.	-	.	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	start_codon	7858034	7858036	.	-	0	transcript_id "Ledus.S2G101500.t1"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	transcript	7854282	7858036	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	stop_codon	7854279	7854281	.	-	0	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7854282	7854420	1	-	1	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7854282	7854420	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7854421	7854509	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7854510	7854576	1	-	2	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7854510	7854576	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7854577	7854667	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7854668	7854788	1	-	0	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7854668	7854788	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7854789	7854929	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7854930	7855009	1	-	2	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7854930	7855009	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7855010	7855105	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7855106	7855218	1	-	1	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7855106	7855218	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7855219	7855305	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7855306	7855430	0.95	-	0	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7855306	7855430	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7855431	7855550	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7855551	7855619	0.98	-	0	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7855551	7855619	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7855620	7855718	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7855719	7855793	1	-	0	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7855719	7855793	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7855794	7855937	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7855938	7855997	1	-	0	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7855938	7855997	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7855998	7856088	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7856089	7856176	1	-	1	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7856089	7856176	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7856177	7856311	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7856312	7856394	0.93	-	0	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7856312	7856394	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7856395	7856501	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7856502	7856578	0.66	-	2	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7856502	7856578	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7856579	7856654	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7856655	7856712	0.75	-	0	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7856655	7856712	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7856713	7856855	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7856856	7856883	0.24	-	1	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7856856	7856883	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7856884	7856958	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7856959	7857138	0.43	-	1	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7856959	7857138	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7857139	7857250	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7857251	7857412	1	-	1	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7857251	7857412	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7857413	7857494	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7857495	7857695	1	-	1	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7857495	7857695	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	intron	7857696	7857929	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	CDS	7857930	7858036	1	-	0	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	exon	7857930	7858036	.	-	.	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
Ledus.S2	AUGUSTUS	start_codon	7858034	7858036	.	-	0	transcript_id "Ledus.S2G101500.t2"; gene_id "Ledus.S2G101500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg431.t1 is derived from g7292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2485671	2487524	.	-	.	Ledus.S2G031300
Ledus.S2	AUGUSTUS	transcript	2485671	2487524	.	-	.	transcript_id "Ledus.S2G031300.t1"; gene_id "Ledus.S2G031300"
Ledus.S2	AUGUSTUS	stop_codon	2485668	2485670	.	-	0	transcript_id "Ledus.S2G031300.t1"; gene_id "Ledus.S2G031300"
Ledus.S2	AUGUSTUS	CDS	2485671	2487005	1	-	0	transcript_id "Ledus.S2G031300.t1"; gene_id "Ledus.S2G031300"
Ledus.S2	AUGUSTUS	exon	2485671	2487005	.	-	.	transcript_id "Ledus.S2G031300.t1"; gene_id "Ledus.S2G031300"
Ledus.S2	AUGUSTUS	intron	2487006	2487173	.	-	.	transcript_id "Ledus.S2G031300.t1"; gene_id "Ledus.S2G031300"
Ledus.S2	AUGUSTUS	CDS	2487174	2487524	0.13	-	0	transcript_id "Ledus.S2G031300.t1"; gene_id "Ledus.S2G031300"
Ledus.S2	AUGUSTUS	exon	2487174	2487524	.	-	.	transcript_id "Ledus.S2G031300.t1"; gene_id "Ledus.S2G031300"
Ledus.S2	AUGUSTUS	start_codon	2487522	2487524	.	-	0	transcript_id "Ledus.S2G031300.t1"; gene_id "Ledus.S2G031300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13021.t1 is derived from g6831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3305297	3305762	.	+	.	Ledus.S6G008300
Ledus.S6	AUGUSTUS	transcript	3305297	3305762	.	+	.	transcript_id "Ledus.S6G008300.t1"; gene_id "Ledus.S6G008300"
Ledus.S6	AUGUSTUS	start_codon	3305297	3305299	.	+	0	transcript_id "Ledus.S6G008300.t1"; gene_id "Ledus.S6G008300"
Ledus.S6	AUGUSTUS	CDS	3305297	3305457	0.28	+	0	transcript_id "Ledus.S6G008300.t1"; gene_id "Ledus.S6G008300"
Ledus.S6	AUGUSTUS	exon	3305297	3305457	.	+	.	transcript_id "Ledus.S6G008300.t1"; gene_id "Ledus.S6G008300"
Ledus.S6	AUGUSTUS	intron	3305458	3305683	.	+	.	transcript_id "Ledus.S6G008300.t1"; gene_id "Ledus.S6G008300"
Ledus.S6	AUGUSTUS	CDS	3305684	3305762	0.31	+	1	transcript_id "Ledus.S6G008300.t1"; gene_id "Ledus.S6G008300"
Ledus.S6	AUGUSTUS	exon	3305684	3305762	.	+	.	transcript_id "Ledus.S6G008300.t1"; gene_id "Ledus.S6G008300"
Ledus.S6	AUGUSTUS	stop_codon	3305763	3305765	.	+	0	transcript_id "Ledus.S6G008300.t1"; gene_id "Ledus.S6G008300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7604.t1 is derived from g12275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4310485	4311351	.	+	.	Ledus.S5G038200
Ledus.S5	AUGUSTUS	transcript	4310485	4311351	.	+	.	transcript_id "Ledus.S5G038200.t1"; gene_id "Ledus.S5G038200"
Ledus.S5	AUGUSTUS	start_codon	4310485	4310487	.	+	0	transcript_id "Ledus.S5G038200.t1"; gene_id "Ledus.S5G038200"
Ledus.S5	AUGUSTUS	CDS	4310485	4311351	0.89	+	0	transcript_id "Ledus.S5G038200.t1"; gene_id "Ledus.S5G038200"
Ledus.S5	AUGUSTUS	exon	4310485	4311351	.	+	.	transcript_id "Ledus.S5G038200.t1"; gene_id "Ledus.S5G038200"
Ledus.S5	AUGUSTUS	stop_codon	4311352	4311354	.	+	0	transcript_id "Ledus.S5G038200.t1"; gene_id "Ledus.S5G038200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1858.t1 is derived from g8721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12970270	12970812	.	+	.	Ledus.S2G174000
Ledus.S2	AUGUSTUS	transcript	12970270	12970812	.	+	.	transcript_id "Ledus.S2G174000.t1"; gene_id "Ledus.S2G174000"
Ledus.S2	AUGUSTUS	start_codon	12970270	12970272	.	+	0	transcript_id "Ledus.S2G174000.t1"; gene_id "Ledus.S2G174000"
Ledus.S2	AUGUSTUS	CDS	12970270	12970812	0.92	+	0	transcript_id "Ledus.S2G174000.t1"; gene_id "Ledus.S2G174000"
Ledus.S2	AUGUSTUS	exon	12970270	12970812	.	+	.	transcript_id "Ledus.S2G174000.t1"; gene_id "Ledus.S2G174000"
Ledus.S2	AUGUSTUS	stop_codon	12970813	12970815	.	+	0	transcript_id "Ledus.S2G174000.t1"; gene_id "Ledus.S2G174000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9818.t1 is derived from g10848.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10102429	10103547	.	+	.	Ledus.S3G129500
Ledus.S3	AUGUSTUS	transcript	10102724	10103547	.	+	.	transcript_id "Ledus.S3G129500.t1"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	start_codon	10102724	10102726	.	+	0	transcript_id "Ledus.S3G129500.t1"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	CDS	10102724	10102837	0.25	+	0	transcript_id "Ledus.S3G129500.t1"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	exon	10102724	10102837	.	+	.	transcript_id "Ledus.S3G129500.t1"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	intron	10102838	10102971	.	+	.	transcript_id "Ledus.S3G129500.t1"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	CDS	10102972	10103235	0.46	+	0	transcript_id "Ledus.S3G129500.t1"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	exon	10102972	10103235	.	+	.	transcript_id "Ledus.S3G129500.t1"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	intron	10103236	10103334	.	+	.	transcript_id "Ledus.S3G129500.t1"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	CDS	10103335	10103547	0.46	+	0	transcript_id "Ledus.S3G129500.t1"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	exon	10103335	10103547	.	+	.	transcript_id "Ledus.S3G129500.t1"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	stop_codon	10103548	10103550	.	+	0	transcript_id "Ledus.S3G129500.t1"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	transcript	10102429	10103547	.	+	.	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	start_codon	10102429	10102431	.	+	0	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	CDS	10102429	10102594	0.42	+	0	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	exon	10102429	10102594	.	+	.	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	intron	10102595	10102682	.	+	.	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	CDS	10102683	10102837	0.29	+	2	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	exon	10102683	10102837	.	+	.	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	intron	10102838	10102971	.	+	.	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	CDS	10102972	10103235	0.45	+	0	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	exon	10102972	10103235	.	+	.	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	intron	10103236	10103334	.	+	.	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	CDS	10103335	10103547	0.39	+	0	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	exon	10103335	10103547	.	+	.	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
Ledus.S3	AUGUSTUS	stop_codon	10103548	10103550	.	+	0	transcript_id "Ledus.S3G129500.t2"; gene_id "Ledus.S3G129500"
# This transcript jg5546.t2 is derived from g2985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5546.t3 is derived from g2985.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5547.t1 is derived from g2986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25068289	25068859	.	+	.	Ledus.S1G296800
Ledus.S1	AUGUSTUS	transcript	25068289	25068859	.	+	.	transcript_id "Ledus.S1G296800.t1"; gene_id "Ledus.S1G296800"
Ledus.S1	AUGUSTUS	start_codon	25068289	25068291	.	+	0	transcript_id "Ledus.S1G296800.t1"; gene_id "Ledus.S1G296800"
Ledus.S1	AUGUSTUS	CDS	25068289	25068378	0.95	+	0	transcript_id "Ledus.S1G296800.t1"; gene_id "Ledus.S1G296800"
Ledus.S1	AUGUSTUS	exon	25068289	25068378	.	+	.	transcript_id "Ledus.S1G296800.t1"; gene_id "Ledus.S1G296800"
Ledus.S1	AUGUSTUS	intron	25068379	25068466	.	+	.	transcript_id "Ledus.S1G296800.t1"; gene_id "Ledus.S1G296800"
Ledus.S1	AUGUSTUS	CDS	25068467	25068589	1	+	0	transcript_id "Ledus.S1G296800.t1"; gene_id "Ledus.S1G296800"
Ledus.S1	AUGUSTUS	exon	25068467	25068589	.	+	.	transcript_id "Ledus.S1G296800.t1"; gene_id "Ledus.S1G296800"
Ledus.S1	AUGUSTUS	intron	25068590	25068685	.	+	.	transcript_id "Ledus.S1G296800.t1"; gene_id "Ledus.S1G296800"
Ledus.S1	AUGUSTUS	CDS	25068686	25068859	1	+	0	transcript_id "Ledus.S1G296800.t1"; gene_id "Ledus.S1G296800"
Ledus.S1	AUGUSTUS	exon	25068686	25068859	.	+	.	transcript_id "Ledus.S1G296800.t1"; gene_id "Ledus.S1G296800"
Ledus.S1	AUGUSTUS	stop_codon	25068860	25068862	.	+	0	transcript_id "Ledus.S1G296800.t1"; gene_id "Ledus.S1G296800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4252.t1 is derived from g1688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15771060	15774325	.	-	.	Ledus.S1G167300
Ledus.S1	AUGUSTUS	transcript	15771060	15774325	.	-	.	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	stop_codon	15771057	15771059	.	-	0	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	CDS	15771060	15771283	0.98	-	2	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	exon	15771060	15771283	.	-	.	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	intron	15771284	15771366	.	-	.	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	CDS	15771367	15771493	1	-	0	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	exon	15771367	15771493	.	-	.	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	intron	15771494	15771616	.	-	.	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	CDS	15771617	15771911	0.9	-	1	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	exon	15771617	15771911	.	-	.	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	intron	15771912	15772064	.	-	.	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	CDS	15772065	15774325	0.64	-	0	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	exon	15772065	15774325	.	-	.	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
Ledus.S1	AUGUSTUS	start_codon	15774323	15774325	.	-	0	transcript_id "Ledus.S1G167300.t1"; gene_id "Ledus.S1G167300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6341.t1 is derived from g3784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30660646	30661074	.	-	.	Ledus.S1G376200
Ledus.S1	AUGUSTUS	transcript	30660646	30661074	.	-	.	transcript_id "Ledus.S1G376200.t1"; gene_id "Ledus.S1G376200"
Ledus.S1	AUGUSTUS	stop_codon	30660643	30660645	.	-	0	transcript_id "Ledus.S1G376200.t1"; gene_id "Ledus.S1G376200"
Ledus.S1	AUGUSTUS	CDS	30660646	30660846	0.64	-	0	transcript_id "Ledus.S1G376200.t1"; gene_id "Ledus.S1G376200"
Ledus.S1	AUGUSTUS	exon	30660646	30660846	.	-	.	transcript_id "Ledus.S1G376200.t1"; gene_id "Ledus.S1G376200"
Ledus.S1	AUGUSTUS	intron	30660847	30660963	.	-	.	transcript_id "Ledus.S1G376200.t1"; gene_id "Ledus.S1G376200"
Ledus.S1	AUGUSTUS	CDS	30660964	30661074	0.56	-	0	transcript_id "Ledus.S1G376200.t1"; gene_id "Ledus.S1G376200"
Ledus.S1	AUGUSTUS	exon	30660964	30661074	.	-	.	transcript_id "Ledus.S1G376200.t1"; gene_id "Ledus.S1G376200"
Ledus.S1	AUGUSTUS	start_codon	30661072	30661074	.	-	0	transcript_id "Ledus.S1G376200.t1"; gene_id "Ledus.S1G376200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8482.t1 is derived from g13154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12146098	12148593	.	-	.	Ledus.S5G126000
Ledus.S5	AUGUSTUS	transcript	12146098	12148593	.	-	.	transcript_id "Ledus.S5G126000.t1"; gene_id "Ledus.S5G126000"
Ledus.S5	AUGUSTUS	stop_codon	12146095	12146097	.	-	0	transcript_id "Ledus.S5G126000.t1"; gene_id "Ledus.S5G126000"
Ledus.S5	AUGUSTUS	CDS	12146098	12148593	1	-	0	transcript_id "Ledus.S5G126000.t1"; gene_id "Ledus.S5G126000"
Ledus.S5	AUGUSTUS	exon	12146098	12148593	.	-	.	transcript_id "Ledus.S5G126000.t1"; gene_id "Ledus.S5G126000"
Ledus.S5	AUGUSTUS	start_codon	12148591	12148593	.	-	0	transcript_id "Ledus.S5G126000.t1"; gene_id "Ledus.S5G126000"
# This transcript jg11998.t2 is derived from g5617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11999.t1 is derived from g5618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8398917	8401019	.	+	.	Ledus.S4G115500
Ledus.S4	AUGUSTUS	transcript	8398917	8401019	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	start_codon	8398917	8398919	.	+	0	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	CDS	8398917	8399232	0.99	+	0	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	exon	8398917	8399232	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	intron	8399233	8399345	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	CDS	8399346	8399401	0.73	+	2	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	exon	8399346	8399401	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	intron	8399402	8399489	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	CDS	8399490	8399851	1	+	0	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	exon	8399490	8399851	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	intron	8399852	8399984	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	CDS	8399985	8400084	1	+	1	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	exon	8399985	8400084	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	intron	8400085	8400172	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	CDS	8400173	8400485	0.99	+	0	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	exon	8400173	8400485	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	intron	8400486	8400598	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	CDS	8400599	8400656	1	+	2	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	exon	8400599	8400656	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	intron	8400657	8400751	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	CDS	8400752	8401019	1	+	1	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	exon	8400752	8401019	.	+	.	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
Ledus.S4	AUGUSTUS	stop_codon	8401020	8401022	.	+	0	transcript_id "Ledus.S4G115500.t1"; gene_id "Ledus.S4G115500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3242.t1 is derived from g677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7081783	7082016	.	+	.	Ledus.S1G066300
Ledus.S1	AUGUSTUS	transcript	7081783	7082016	.	+	.	transcript_id "Ledus.S1G066300.t1"; gene_id "Ledus.S1G066300"
Ledus.S1	AUGUSTUS	start_codon	7081783	7081785	.	+	0	transcript_id "Ledus.S1G066300.t1"; gene_id "Ledus.S1G066300"
Ledus.S1	AUGUSTUS	CDS	7081783	7082016	1	+	0	transcript_id "Ledus.S1G066300.t1"; gene_id "Ledus.S1G066300"
Ledus.S1	AUGUSTUS	exon	7081783	7082016	.	+	.	transcript_id "Ledus.S1G066300.t1"; gene_id "Ledus.S1G066300"
Ledus.S1	AUGUSTUS	stop_codon	7082017	7082019	.	+	0	transcript_id "Ledus.S1G066300.t1"; gene_id "Ledus.S1G066300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5958.t1 is derived from g3401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28047705	28048574	.	-	.	Ledus.S1G337900
Ledus.S1	AUGUSTUS	transcript	28047705	28048574	.	-	.	transcript_id "Ledus.S1G337900.t1"; gene_id "Ledus.S1G337900"
Ledus.S1	AUGUSTUS	stop_codon	28047702	28047704	.	-	0	transcript_id "Ledus.S1G337900.t1"; gene_id "Ledus.S1G337900"
Ledus.S1	AUGUSTUS	CDS	28047705	28048574	0.94	-	0	transcript_id "Ledus.S1G337900.t1"; gene_id "Ledus.S1G337900"
Ledus.S1	AUGUSTUS	exon	28047705	28048574	.	-	.	transcript_id "Ledus.S1G337900.t1"; gene_id "Ledus.S1G337900"
Ledus.S1	AUGUSTUS	start_codon	28048572	28048574	.	-	0	transcript_id "Ledus.S1G337900.t1"; gene_id "Ledus.S1G337900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3669.t1 is derived from g1105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10577839	10579185	.	-	.	Ledus.S1G109000
Ledus.S1	AUGUSTUS	transcript	10577839	10579185	.	-	.	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	stop_codon	10577836	10577838	.	-	0	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	CDS	10577839	10577930	1	-	2	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	exon	10577839	10577930	.	-	.	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	intron	10577931	10578021	.	-	.	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	CDS	10578022	10578130	1	-	0	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	exon	10578022	10578130	.	-	.	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	intron	10578131	10578227	.	-	.	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	CDS	10578228	10578300	1	-	1	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	exon	10578228	10578300	.	-	.	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	intron	10578301	10578446	.	-	.	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	CDS	10578447	10578533	1	-	1	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	exon	10578447	10578533	.	-	.	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	intron	10578534	10578643	.	-	.	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	CDS	10578644	10578885	0.26	-	0	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	exon	10578644	10578885	.	-	.	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	intron	10578886	10578963	.	-	.	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	CDS	10578964	10579185	0.82	-	0	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	exon	10578964	10579185	.	-	.	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
Ledus.S1	AUGUSTUS	start_codon	10579183	10579185	.	-	0	transcript_id "Ledus.S1G109000.t1"; gene_id "Ledus.S1G109000"
# This transcript jg10788.t2 is derived from g11820.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10789.t1 is derived from g11821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17732311	17738045	.	+	.	Ledus.S3G226600
Ledus.S3	AUGUSTUS	transcript	17732311	17738045	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	start_codon	17732311	17732313	.	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17732311	17732381	0.42	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17732311	17732381	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17732382	17732797	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17732798	17733068	1	+	1	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17732798	17733068	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17733069	17733174	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17733175	17733389	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17733175	17733389	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17733390	17733492	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17733493	17733601	0.98	+	1	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17733493	17733601	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17733602	17733778	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17733779	17733880	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17733779	17733880	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17733881	17734111	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17734112	17734171	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17734112	17734171	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17734172	17734282	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17734283	17734361	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17734283	17734361	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17734362	17734443	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17734444	17734591	1	+	2	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17734444	17734591	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17734592	17734766	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17734767	17734890	0.98	+	1	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17734767	17734890	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17734891	17734994	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17734995	17735175	0.98	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17734995	17735175	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17735176	17735289	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17735290	17735318	0.98	+	2	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17735290	17735318	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17735319	17735417	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17735418	17735566	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17735418	17735566	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17735567	17735666	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17735667	17735769	1	+	1	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17735667	17735769	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17735770	17735897	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17735898	17735993	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17735898	17735993	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17735994	17736093	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17736094	17736152	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17736094	17736152	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17736153	17736240	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17736241	17736364	1	+	1	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17736241	17736364	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17736365	17736507	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17736508	17736570	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17736508	17736570	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17736571	17736657	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17736658	17736717	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17736658	17736717	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17736718	17736803	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17736804	17736965	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17736804	17736965	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17736966	17737050	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17737051	17737124	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17737051	17737124	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17737125	17737222	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17737223	17737316	1	+	1	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17737223	17737316	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17737317	17737407	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17737408	17737544	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17737408	17737544	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17737545	17737626	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17737627	17737707	1	+	1	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17737627	17737707	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17737708	17737794	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17737795	17737900	1	+	1	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17737795	17737900	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	intron	17737901	17737979	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	CDS	17737980	17738045	1	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	exon	17737980	17738045	.	+	.	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
Ledus.S3	AUGUSTUS	stop_codon	17738046	17738048	.	+	0	transcript_id "Ledus.S3G226600.t1"; gene_id "Ledus.S3G226600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7336.t1 is derived from g12007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1251194	1252636	.	+	.	Ledus.S5G011400
Ledus.S5	AUGUSTUS	transcript	1251194	1252636	.	+	.	transcript_id "Ledus.S5G011400.t1"; gene_id "Ledus.S5G011400"
Ledus.S5	AUGUSTUS	start_codon	1251194	1251196	.	+	0	transcript_id "Ledus.S5G011400.t1"; gene_id "Ledus.S5G011400"
Ledus.S5	AUGUSTUS	CDS	1251194	1251748	1	+	0	transcript_id "Ledus.S5G011400.t1"; gene_id "Ledus.S5G011400"
Ledus.S5	AUGUSTUS	exon	1251194	1251748	.	+	.	transcript_id "Ledus.S5G011400.t1"; gene_id "Ledus.S5G011400"
Ledus.S5	AUGUSTUS	intron	1251749	1251883	.	+	.	transcript_id "Ledus.S5G011400.t1"; gene_id "Ledus.S5G011400"
Ledus.S5	AUGUSTUS	CDS	1251884	1252636	1	+	0	transcript_id "Ledus.S5G011400.t1"; gene_id "Ledus.S5G011400"
Ledus.S5	AUGUSTUS	exon	1251884	1252636	.	+	.	transcript_id "Ledus.S5G011400.t1"; gene_id "Ledus.S5G011400"
Ledus.S5	AUGUSTUS	stop_codon	1252637	1252639	.	+	0	transcript_id "Ledus.S5G011400.t1"; gene_id "Ledus.S5G011400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7709.t1 is derived from g12380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5331261	5334965	.	-	.	Ledus.S5G048700
Ledus.S5	AUGUSTUS	transcript	5331261	5334965	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	stop_codon	5331258	5331260	.	-	0	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5331261	5331292	0.99	-	2	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5331261	5331292	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5331293	5331364	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5331365	5331506	0.91	-	0	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5331365	5331506	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5331507	5331680	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5331681	5331971	0.87	-	0	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5331681	5331971	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5331972	5332044	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5332045	5332125	1	-	0	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5332045	5332125	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5332126	5332199	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5332200	5332359	1	-	1	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5332200	5332359	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5332360	5332451	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5332452	5332552	0.96	-	0	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5332452	5332552	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5332553	5332656	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5332657	5332797	0.97	-	0	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5332657	5332797	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5332798	5332872	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5332873	5333062	1	-	1	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5332873	5333062	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5333063	5333149	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5333150	5333248	1	-	1	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5333150	5333248	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5333249	5333342	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5333343	5333485	1	-	0	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5333343	5333485	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5333486	5333559	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5333560	5333639	1	-	2	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5333560	5333639	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5333640	5333734	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5333735	5333987	1	-	0	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5333735	5333987	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5333988	5334080	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5334081	5334263	1	-	0	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5334081	5334263	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5334264	5334391	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5334392	5334448	1	-	0	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5334392	5334448	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5334449	5334518	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5334519	5334604	1	-	2	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5334519	5334604	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	intron	5334605	5334700	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	CDS	5334701	5334965	1	-	0	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	exon	5334701	5334965	.	-	.	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
Ledus.S5	AUGUSTUS	start_codon	5334963	5334965	.	-	0	transcript_id "Ledus.S5G048700.t1"; gene_id "Ledus.S5G048700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8686.t1 is derived from g9716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1367790	1371164	.	+	.	Ledus.S3G016300
Ledus.S3	AUGUSTUS	transcript	1367790	1371164	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	start_codon	1367790	1367792	.	+	0	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	CDS	1367790	1368179	0.91	+	0	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	exon	1367790	1368179	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	intron	1368180	1368436	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	CDS	1368437	1369169	0.75	+	0	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	exon	1368437	1369169	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	intron	1369170	1369372	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	CDS	1369373	1369529	0.9	+	2	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	exon	1369373	1369529	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	intron	1369530	1369641	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	CDS	1369642	1369696	1	+	1	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	exon	1369642	1369696	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	intron	1369697	1369783	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	CDS	1369784	1369851	0.99	+	0	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	exon	1369784	1369851	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	intron	1369852	1369960	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	CDS	1369961	1370065	0.96	+	1	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	exon	1369961	1370065	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	intron	1370066	1370157	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	CDS	1370158	1370265	0.69	+	1	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	exon	1370158	1370265	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	intron	1370266	1370350	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	CDS	1370351	1370464	1	+	1	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	exon	1370351	1370464	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	intron	1370465	1370597	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	CDS	1370598	1370738	0.81	+	1	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	exon	1370598	1370738	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	intron	1370739	1370846	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	CDS	1370847	1370906	0.81	+	1	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	exon	1370847	1370906	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	intron	1370907	1371001	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	CDS	1371002	1371164	1	+	1	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	exon	1371002	1371164	.	+	.	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
Ledus.S3	AUGUSTUS	stop_codon	1371165	1371167	.	+	0	transcript_id "Ledus.S3G016300.t1"; gene_id "Ledus.S3G016300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1974.t1 is derived from g8837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13991279	13992949	.	-	.	Ledus.S2G185600
Ledus.S2	AUGUSTUS	transcript	13991279	13992949	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	stop_codon	13991276	13991278	.	-	0	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	CDS	13991279	13991370	1	-	2	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	exon	13991279	13991370	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	intron	13991371	13991456	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	CDS	13991457	13991554	0.49	-	1	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	exon	13991457	13991554	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	intron	13991555	13991660	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	CDS	13991661	13991722	0.99	-	0	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	exon	13991661	13991722	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	intron	13991723	13991831	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	CDS	13991832	13991904	1	-	1	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	exon	13991832	13991904	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	intron	13991905	13992048	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	CDS	13992049	13992134	1	-	0	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	exon	13992049	13992134	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	intron	13992135	13992222	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	CDS	13992223	13992279	1	-	0	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	exon	13992223	13992279	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	intron	13992280	13992413	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	CDS	13992414	13992461	1	-	0	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	exon	13992414	13992461	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	intron	13992462	13992687	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	CDS	13992688	13992759	1	-	0	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	exon	13992688	13992759	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	intron	13992760	13992865	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	CDS	13992866	13992949	0.65	-	0	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	exon	13992866	13992949	.	-	.	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
Ledus.S2	AUGUSTUS	start_codon	13992947	13992949	.	-	0	transcript_id "Ledus.S2G185600.t1"; gene_id "Ledus.S2G185600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10004.t1 is derived from g11034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11811326	11811712	.	-	.	Ledus.S3G148100
Ledus.S3	AUGUSTUS	transcript	11811326	11811712	.	-	.	transcript_id "Ledus.S3G148100.t1"; gene_id "Ledus.S3G148100"
Ledus.S3	AUGUSTUS	stop_codon	11811323	11811325	.	-	0	transcript_id "Ledus.S3G148100.t1"; gene_id "Ledus.S3G148100"
Ledus.S3	AUGUSTUS	CDS	11811326	11811712	0.33	-	0	transcript_id "Ledus.S3G148100.t1"; gene_id "Ledus.S3G148100"
Ledus.S3	AUGUSTUS	exon	11811326	11811712	.	-	.	transcript_id "Ledus.S3G148100.t1"; gene_id "Ledus.S3G148100"
Ledus.S3	AUGUSTUS	start_codon	11811710	11811712	.	-	0	transcript_id "Ledus.S3G148100.t1"; gene_id "Ledus.S3G148100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10991.t1 is derived from g4609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1031087	1031858	.	+	.	Ledus.S4G014700
Ledus.S4	AUGUSTUS	transcript	1031087	1031858	.	+	.	transcript_id "Ledus.S4G014700.t1"; gene_id "Ledus.S4G014700"
Ledus.S4	AUGUSTUS	start_codon	1031087	1031089	.	+	0	transcript_id "Ledus.S4G014700.t1"; gene_id "Ledus.S4G014700"
Ledus.S4	AUGUSTUS	CDS	1031087	1031364	0.71	+	0	transcript_id "Ledus.S4G014700.t1"; gene_id "Ledus.S4G014700"
Ledus.S4	AUGUSTUS	exon	1031087	1031364	.	+	.	transcript_id "Ledus.S4G014700.t1"; gene_id "Ledus.S4G014700"
Ledus.S4	AUGUSTUS	intron	1031365	1031467	.	+	.	transcript_id "Ledus.S4G014700.t1"; gene_id "Ledus.S4G014700"
Ledus.S4	AUGUSTUS	CDS	1031468	1031664	0.58	+	1	transcript_id "Ledus.S4G014700.t1"; gene_id "Ledus.S4G014700"
Ledus.S4	AUGUSTUS	exon	1031468	1031664	.	+	.	transcript_id "Ledus.S4G014700.t1"; gene_id "Ledus.S4G014700"
Ledus.S4	AUGUSTUS	intron	1031665	1031793	.	+	.	transcript_id "Ledus.S4G014700.t1"; gene_id "Ledus.S4G014700"
Ledus.S4	AUGUSTUS	CDS	1031794	1031858	0.53	+	2	transcript_id "Ledus.S4G014700.t1"; gene_id "Ledus.S4G014700"
Ledus.S4	AUGUSTUS	exon	1031794	1031858	.	+	.	transcript_id "Ledus.S4G014700.t1"; gene_id "Ledus.S4G014700"
Ledus.S4	AUGUSTUS	stop_codon	1031859	1031861	.	+	0	transcript_id "Ledus.S4G014700.t1"; gene_id "Ledus.S4G014700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg247.t1 is derived from g7108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1119992	1120866	.	-	.	Ledus.S2G012900
Ledus.S2	AUGUSTUS	transcript	1119992	1120866	.	-	.	transcript_id "Ledus.S2G012900.t1"; gene_id "Ledus.S2G012900"
Ledus.S2	AUGUSTUS	stop_codon	1119989	1119991	.	-	0	transcript_id "Ledus.S2G012900.t1"; gene_id "Ledus.S2G012900"
Ledus.S2	AUGUSTUS	CDS	1119992	1120519	1	-	0	transcript_id "Ledus.S2G012900.t1"; gene_id "Ledus.S2G012900"
Ledus.S2	AUGUSTUS	exon	1119992	1120519	.	-	.	transcript_id "Ledus.S2G012900.t1"; gene_id "Ledus.S2G012900"
Ledus.S2	AUGUSTUS	intron	1120520	1120620	.	-	.	transcript_id "Ledus.S2G012900.t1"; gene_id "Ledus.S2G012900"
Ledus.S2	AUGUSTUS	CDS	1120621	1120749	0.6	-	0	transcript_id "Ledus.S2G012900.t1"; gene_id "Ledus.S2G012900"
Ledus.S2	AUGUSTUS	exon	1120621	1120749	.	-	.	transcript_id "Ledus.S2G012900.t1"; gene_id "Ledus.S2G012900"
Ledus.S2	AUGUSTUS	intron	1120750	1120836	.	-	.	transcript_id "Ledus.S2G012900.t1"; gene_id "Ledus.S2G012900"
Ledus.S2	AUGUSTUS	CDS	1120837	1120866	0.99	-	0	transcript_id "Ledus.S2G012900.t1"; gene_id "Ledus.S2G012900"
Ledus.S2	AUGUSTUS	exon	1120837	1120866	.	-	.	transcript_id "Ledus.S2G012900.t1"; gene_id "Ledus.S2G012900"
Ledus.S2	AUGUSTUS	start_codon	1120864	1120866	.	-	0	transcript_id "Ledus.S2G012900.t1"; gene_id "Ledus.S2G012900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9139.t1 is derived from g10169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4799860	4800602	.	-	.	Ledus.S3G061600
Ledus.S3	AUGUSTUS	transcript	4799860	4800602	.	-	.	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	stop_codon	4799857	4799859	.	-	0	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	CDS	4799860	4800015	1	-	0	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	exon	4799860	4800015	.	-	.	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	intron	4800016	4800171	.	-	.	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	CDS	4800172	4800236	1	-	2	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	exon	4800172	4800236	.	-	.	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	intron	4800237	4800404	.	-	.	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	CDS	4800405	4800449	0.97	-	2	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	exon	4800405	4800449	.	-	.	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	intron	4800450	4800580	.	-	.	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	CDS	4800581	4800602	0.97	-	0	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	exon	4800581	4800602	.	-	.	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
Ledus.S3	AUGUSTUS	start_codon	4800600	4800602	.	-	0	transcript_id "Ledus.S3G061600.t1"; gene_id "Ledus.S3G061600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8297.t1 is derived from g12968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10542293	10543010	.	+	.	Ledus.S5G107500
Ledus.S5	AUGUSTUS	transcript	10542293	10543010	.	+	.	transcript_id "Ledus.S5G107500.t1"; gene_id "Ledus.S5G107500"
Ledus.S5	AUGUSTUS	start_codon	10542293	10542295	.	+	0	transcript_id "Ledus.S5G107500.t1"; gene_id "Ledus.S5G107500"
Ledus.S5	AUGUSTUS	CDS	10542293	10542300	0.45	+	0	transcript_id "Ledus.S5G107500.t1"; gene_id "Ledus.S5G107500"
Ledus.S5	AUGUSTUS	exon	10542293	10542300	.	+	.	transcript_id "Ledus.S5G107500.t1"; gene_id "Ledus.S5G107500"
Ledus.S5	AUGUSTUS	intron	10542301	10542461	.	+	.	transcript_id "Ledus.S5G107500.t1"; gene_id "Ledus.S5G107500"
Ledus.S5	AUGUSTUS	CDS	10542462	10542512	1	+	1	transcript_id "Ledus.S5G107500.t1"; gene_id "Ledus.S5G107500"
Ledus.S5	AUGUSTUS	exon	10542462	10542512	.	+	.	transcript_id "Ledus.S5G107500.t1"; gene_id "Ledus.S5G107500"
Ledus.S5	AUGUSTUS	intron	10542513	10542598	.	+	.	transcript_id "Ledus.S5G107500.t1"; gene_id "Ledus.S5G107500"
Ledus.S5	AUGUSTUS	CDS	10542599	10543010	1	+	1	transcript_id "Ledus.S5G107500.t1"; gene_id "Ledus.S5G107500"
Ledus.S5	AUGUSTUS	exon	10542599	10543010	.	+	.	transcript_id "Ledus.S5G107500.t1"; gene_id "Ledus.S5G107500"
Ledus.S5	AUGUSTUS	stop_codon	10543011	10543013	.	+	0	transcript_id "Ledus.S5G107500.t1"; gene_id "Ledus.S5G107500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11557.t1 is derived from g5175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5267476	5271913	.	-	.	Ledus.S4G071300
Ledus.S4	AUGUSTUS	transcript	5267476	5271913	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	stop_codon	5267473	5267475	.	-	0	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	CDS	5267476	5267703	1	-	0	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	exon	5267476	5267703	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	intron	5267704	5267793	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	CDS	5267794	5267980	1	-	1	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	exon	5267794	5267980	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	intron	5267981	5268073	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	CDS	5268074	5268242	1	-	2	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	exon	5268074	5268242	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	intron	5268243	5268331	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	CDS	5268332	5268477	1	-	1	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	exon	5268332	5268477	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	intron	5268478	5268599	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	CDS	5268600	5269403	0.39	-	1	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	exon	5268600	5269403	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	intron	5269404	5269794	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	CDS	5269795	5269914	0.61	-	1	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	exon	5269795	5269914	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	intron	5269915	5270029	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	CDS	5270030	5270088	0.7	-	0	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	exon	5270030	5270088	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	intron	5270089	5270344	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	CDS	5270345	5271913	0.44	-	0	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	exon	5270345	5271913	.	-	.	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
Ledus.S4	AUGUSTUS	start_codon	5271911	5271913	.	-	0	transcript_id "Ledus.S4G071300.t1"; gene_id "Ledus.S4G071300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6078.t1 is derived from g3521.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28828979	28829638	.	+	.	Ledus.S1G349900
Ledus.S1	AUGUSTUS	transcript	28828979	28829638	.	+	.	transcript_id "Ledus.S1G349900.t1"; gene_id "Ledus.S1G349900"
Ledus.S1	AUGUSTUS	start_codon	28828979	28828981	.	+	0	transcript_id "Ledus.S1G349900.t1"; gene_id "Ledus.S1G349900"
Ledus.S1	AUGUSTUS	CDS	28828979	28829638	0.8	+	0	transcript_id "Ledus.S1G349900.t1"; gene_id "Ledus.S1G349900"
Ledus.S1	AUGUSTUS	exon	28828979	28829638	.	+	.	transcript_id "Ledus.S1G349900.t1"; gene_id "Ledus.S1G349900"
Ledus.S1	AUGUSTUS	stop_codon	28829639	28829641	.	+	0	transcript_id "Ledus.S1G349900.t1"; gene_id "Ledus.S1G349900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11820.t1 is derived from g5439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6974483	6975634	.	-	.	Ledus.S4G097600
Ledus.S4	AUGUSTUS	transcript	6974483	6975634	.	-	.	transcript_id "Ledus.S4G097600.t1"; gene_id "Ledus.S4G097600"
Ledus.S4	AUGUSTUS	stop_codon	6974480	6974482	.	-	0	transcript_id "Ledus.S4G097600.t1"; gene_id "Ledus.S4G097600"
Ledus.S4	AUGUSTUS	CDS	6974483	6974806	0.95	-	0	transcript_id "Ledus.S4G097600.t1"; gene_id "Ledus.S4G097600"
Ledus.S4	AUGUSTUS	exon	6974483	6974806	.	-	.	transcript_id "Ledus.S4G097600.t1"; gene_id "Ledus.S4G097600"
Ledus.S4	AUGUSTUS	intron	6974807	6974903	.	-	.	transcript_id "Ledus.S4G097600.t1"; gene_id "Ledus.S4G097600"
Ledus.S4	AUGUSTUS	CDS	6974904	6975466	0.99	-	2	transcript_id "Ledus.S4G097600.t1"; gene_id "Ledus.S4G097600"
Ledus.S4	AUGUSTUS	exon	6974904	6975466	.	-	.	transcript_id "Ledus.S4G097600.t1"; gene_id "Ledus.S4G097600"
Ledus.S4	AUGUSTUS	intron	6975467	6975549	.	-	.	transcript_id "Ledus.S4G097600.t1"; gene_id "Ledus.S4G097600"
Ledus.S4	AUGUSTUS	CDS	6975550	6975634	0.99	-	0	transcript_id "Ledus.S4G097600.t1"; gene_id "Ledus.S4G097600"
Ledus.S4	AUGUSTUS	exon	6975550	6975634	.	-	.	transcript_id "Ledus.S4G097600.t1"; gene_id "Ledus.S4G097600"
Ledus.S4	AUGUSTUS	start_codon	6975632	6975634	.	-	0	transcript_id "Ledus.S4G097600.t1"; gene_id "Ledus.S4G097600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8866.t1 is derived from g9896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2599237	2600639	.	+	.	Ledus.S3G034300
Ledus.S3	AUGUSTUS	transcript	2599237	2600639	.	+	.	transcript_id "Ledus.S3G034300.t1"; gene_id "Ledus.S3G034300"
Ledus.S3	AUGUSTUS	start_codon	2599237	2599239	.	+	0	transcript_id "Ledus.S3G034300.t1"; gene_id "Ledus.S3G034300"
Ledus.S3	AUGUSTUS	CDS	2599237	2599782	1	+	0	transcript_id "Ledus.S3G034300.t1"; gene_id "Ledus.S3G034300"
Ledus.S3	AUGUSTUS	exon	2599237	2599782	.	+	.	transcript_id "Ledus.S3G034300.t1"; gene_id "Ledus.S3G034300"
Ledus.S3	AUGUSTUS	intron	2599783	2599875	.	+	.	transcript_id "Ledus.S3G034300.t1"; gene_id "Ledus.S3G034300"
Ledus.S3	AUGUSTUS	CDS	2599876	2600181	1	+	0	transcript_id "Ledus.S3G034300.t1"; gene_id "Ledus.S3G034300"
Ledus.S3	AUGUSTUS	exon	2599876	2600181	.	+	.	transcript_id "Ledus.S3G034300.t1"; gene_id "Ledus.S3G034300"
Ledus.S3	AUGUSTUS	intron	2600182	2600276	.	+	.	transcript_id "Ledus.S3G034300.t1"; gene_id "Ledus.S3G034300"
Ledus.S3	AUGUSTUS	CDS	2600277	2600639	1	+	0	transcript_id "Ledus.S3G034300.t1"; gene_id "Ledus.S3G034300"
Ledus.S3	AUGUSTUS	exon	2600277	2600639	.	+	.	transcript_id "Ledus.S3G034300.t1"; gene_id "Ledus.S3G034300"
Ledus.S3	AUGUSTUS	stop_codon	2600640	2600642	.	+	0	transcript_id "Ledus.S3G034300.t1"; gene_id "Ledus.S3G034300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12361.t1 is derived from g5982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11436931	11437489	.	-	.	Ledus.S4G151700
Ledus.S4	AUGUSTUS	transcript	11436931	11437489	.	-	.	transcript_id "Ledus.S4G151700.t1"; gene_id "Ledus.S4G151700"
Ledus.S4	AUGUSTUS	stop_codon	11436928	11436930	.	-	0	transcript_id "Ledus.S4G151700.t1"; gene_id "Ledus.S4G151700"
Ledus.S4	AUGUSTUS	CDS	11436931	11437202	0.94	-	2	transcript_id "Ledus.S4G151700.t1"; gene_id "Ledus.S4G151700"
Ledus.S4	AUGUSTUS	exon	11436931	11437202	.	-	.	transcript_id "Ledus.S4G151700.t1"; gene_id "Ledus.S4G151700"
Ledus.S4	AUGUSTUS	intron	11437203	11437293	.	-	.	transcript_id "Ledus.S4G151700.t1"; gene_id "Ledus.S4G151700"
Ledus.S4	AUGUSTUS	CDS	11437294	11437489	0.94	-	0	transcript_id "Ledus.S4G151700.t1"; gene_id "Ledus.S4G151700"
Ledus.S4	AUGUSTUS	exon	11437294	11437489	.	-	.	transcript_id "Ledus.S4G151700.t1"; gene_id "Ledus.S4G151700"
Ledus.S4	AUGUSTUS	start_codon	11437487	11437489	.	-	0	transcript_id "Ledus.S4G151700.t1"; gene_id "Ledus.S4G151700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10891.t1 is derived from g4509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	339459	343464	.	-	.	Ledus.S4G004700
Ledus.S4	AUGUSTUS	transcript	339459	343464	.	-	.	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	stop_codon	339456	339458	.	-	0	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	CDS	339459	339911	0.99	-	0	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	exon	339459	339911	.	-	.	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	intron	339912	340005	.	-	.	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	CDS	340006	340305	1	-	0	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	exon	340006	340305	.	-	.	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	intron	340306	340394	.	-	.	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	CDS	340395	340821	0.99	-	1	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	exon	340395	340821	.	-	.	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	intron	340822	340947	.	-	.	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	CDS	340948	341461	1	-	2	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	exon	340948	341461	.	-	.	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	intron	341462	341552	.	-	.	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	CDS	341553	342341	0.91	-	2	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	exon	341553	342341	.	-	.	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	intron	342342	343235	.	-	.	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	CDS	343236	343464	0.55	-	0	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	exon	343236	343464	.	-	.	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
Ledus.S4	AUGUSTUS	start_codon	343462	343464	.	-	0	transcript_id "Ledus.S4G004700.t1"; gene_id "Ledus.S4G004700"
# This transcript jg6984.t2 is derived from g6515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6985.t1 is derived from g6516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	542823	543639	.	+	.	Ledus.C7G004600
Ledus.C7	AUGUSTUS	transcript	542823	543639	.	+	.	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	start_codon	542823	542825	.	+	0	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	CDS	542823	542975	0.65	+	0	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	exon	542823	542975	.	+	.	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	intron	542976	543058	.	+	.	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	CDS	543059	543131	1	+	0	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	exon	543059	543131	.	+	.	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	intron	543132	543230	.	+	.	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	CDS	543231	543557	0.85	+	2	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	exon	543231	543557	.	+	.	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	intron	543558	543631	.	+	.	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	CDS	543632	543639	0.85	+	2	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	exon	543632	543639	.	+	.	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
Ledus.C7	AUGUSTUS	stop_codon	543640	543642	.	+	0	transcript_id "Ledus.C7G004600.t1"; gene_id "Ledus.C7G004600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6221.t1 is derived from g3664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29727717	29729753	.	-	.	Ledus.S1G364200
Ledus.S1	AUGUSTUS	transcript	29727717	29729753	.	-	.	transcript_id "Ledus.S1G364200.t1"; gene_id "Ledus.S1G364200"
Ledus.S1	AUGUSTUS	stop_codon	29727714	29727716	.	-	0	transcript_id "Ledus.S1G364200.t1"; gene_id "Ledus.S1G364200"
Ledus.S1	AUGUSTUS	CDS	29727717	29729753	0.46	-	0	transcript_id "Ledus.S1G364200.t1"; gene_id "Ledus.S1G364200"
Ledus.S1	AUGUSTUS	exon	29727717	29729753	.	-	.	transcript_id "Ledus.S1G364200.t1"; gene_id "Ledus.S1G364200"
Ledus.S1	AUGUSTUS	start_codon	29729751	29729753	.	-	0	transcript_id "Ledus.S1G364200.t1"; gene_id "Ledus.S1G364200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2507.t1 is derived from g9370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18515593	18516914	.	+	.	Ledus.S2G238900
Ledus.S2	AUGUSTUS	transcript	18515593	18516914	.	+	.	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	start_codon	18515593	18515595	.	+	0	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	CDS	18515593	18516108	1	+	0	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	exon	18515593	18516108	.	+	.	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	intron	18516109	18516423	.	+	.	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	CDS	18516424	18516546	1	+	0	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	exon	18516424	18516546	.	+	.	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	intron	18516547	18516657	.	+	.	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	CDS	18516658	18516774	1	+	0	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	exon	18516658	18516774	.	+	.	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	intron	18516775	18516896	.	+	.	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	CDS	18516897	18516914	1	+	0	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	exon	18516897	18516914	.	+	.	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
Ledus.S2	AUGUSTUS	stop_codon	18516915	18516917	.	+	0	transcript_id "Ledus.S2G238900.t1"; gene_id "Ledus.S2G238900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8513.t1 is derived from g13185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12404115	12404837	.	-	.	Ledus.S5G129100
Ledus.S5	AUGUSTUS	transcript	12404115	12404837	.	-	.	transcript_id "Ledus.S5G129100.t1"; gene_id "Ledus.S5G129100"
Ledus.S5	AUGUSTUS	stop_codon	12404112	12404114	.	-	0	transcript_id "Ledus.S5G129100.t1"; gene_id "Ledus.S5G129100"
Ledus.S5	AUGUSTUS	CDS	12404115	12404837	0.91	-	0	transcript_id "Ledus.S5G129100.t1"; gene_id "Ledus.S5G129100"
Ledus.S5	AUGUSTUS	exon	12404115	12404837	.	-	.	transcript_id "Ledus.S5G129100.t1"; gene_id "Ledus.S5G129100"
Ledus.S5	AUGUSTUS	start_codon	12404835	12404837	.	-	0	transcript_id "Ledus.S5G129100.t1"; gene_id "Ledus.S5G129100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7603.t1 is derived from g12274.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4306977	4308735	.	+	.	Ledus.S5G038100
Ledus.S5	AUGUSTUS	transcript	4306977	4308735	.	+	.	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	start_codon	4306977	4306979	.	+	0	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	CDS	4306977	4307564	0.63	+	0	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	exon	4306977	4307564	.	+	.	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	intron	4307565	4307635	.	+	.	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	CDS	4307636	4307794	0.55	+	0	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	exon	4307636	4307794	.	+	.	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	intron	4307795	4308010	.	+	.	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	CDS	4308011	4308090	0.44	+	0	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	exon	4308011	4308090	.	+	.	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	intron	4308091	4308225	.	+	.	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	CDS	4308226	4308267	0.5	+	1	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	exon	4308226	4308267	.	+	.	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	intron	4308268	4308427	.	+	.	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	CDS	4308428	4308533	0.56	+	1	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	exon	4308428	4308533	.	+	.	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	intron	4308534	4308672	.	+	.	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	CDS	4308673	4308735	0.65	+	0	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	exon	4308673	4308735	.	+	.	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
Ledus.S5	AUGUSTUS	stop_codon	4308736	4308738	.	+	0	transcript_id "Ledus.S5G038100.t1"; gene_id "Ledus.S5G038100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8103.t1 is derived from g12774.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9145106	9145556	.	+	.	Ledus.S5G088100
Ledus.S5	AUGUSTUS	transcript	9145106	9145556	.	+	.	transcript_id "Ledus.S5G088100.t1"; gene_id "Ledus.S5G088100"
Ledus.S5	AUGUSTUS	start_codon	9145106	9145108	.	+	0	transcript_id "Ledus.S5G088100.t1"; gene_id "Ledus.S5G088100"
Ledus.S5	AUGUSTUS	CDS	9145106	9145257	0.45	+	0	transcript_id "Ledus.S5G088100.t1"; gene_id "Ledus.S5G088100"
Ledus.S5	AUGUSTUS	exon	9145106	9145257	.	+	.	transcript_id "Ledus.S5G088100.t1"; gene_id "Ledus.S5G088100"
Ledus.S5	AUGUSTUS	intron	9145258	9145339	.	+	.	transcript_id "Ledus.S5G088100.t1"; gene_id "Ledus.S5G088100"
Ledus.S5	AUGUSTUS	CDS	9145340	9145556	0.43	+	1	transcript_id "Ledus.S5G088100.t1"; gene_id "Ledus.S5G088100"
Ledus.S5	AUGUSTUS	exon	9145340	9145556	.	+	.	transcript_id "Ledus.S5G088100.t1"; gene_id "Ledus.S5G088100"
Ledus.S5	AUGUSTUS	stop_codon	9145557	9145559	.	+	0	transcript_id "Ledus.S5G088100.t1"; gene_id "Ledus.S5G088100"
# This transcript jg5186.t2 is derived from g2625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5187.t1 is derived from g2626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22266840	22269789	.	-	.	Ledus.S1G260800
Ledus.S1	AUGUSTUS	transcript	22266840	22269789	.	-	.	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	stop_codon	22266837	22266839	.	-	0	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	CDS	22266840	22267271	0.94	-	0	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	exon	22266840	22267271	.	-	.	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	intron	22267272	22267497	.	-	.	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	CDS	22267498	22267753	1	-	1	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	exon	22267498	22267753	.	-	.	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	intron	22267754	22267841	.	-	.	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	CDS	22267842	22268683	1	-	0	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	exon	22267842	22268683	.	-	.	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	intron	22268684	22268824	.	-	.	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	CDS	22268825	22269097	1	-	0	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	exon	22268825	22269097	.	-	.	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	intron	22269098	22269195	.	-	.	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	CDS	22269196	22269362	1	-	2	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	exon	22269196	22269362	.	-	.	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	intron	22269363	22269518	.	-	.	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	CDS	22269519	22269789	0.85	-	0	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	exon	22269519	22269789	.	-	.	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
Ledus.S1	AUGUSTUS	start_codon	22269787	22269789	.	-	0	transcript_id "Ledus.S1G260800.t1"; gene_id "Ledus.S1G260800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6461.t1 is derived from g3904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31370589	31371327	.	-	.	Ledus.S1G388200
Ledus.S1	AUGUSTUS	transcript	31370589	31371327	.	-	.	transcript_id "Ledus.S1G388200.t1"; gene_id "Ledus.S1G388200"
Ledus.S1	AUGUSTUS	stop_codon	31370586	31370588	.	-	0	transcript_id "Ledus.S1G388200.t1"; gene_id "Ledus.S1G388200"
Ledus.S1	AUGUSTUS	CDS	31370589	31370809	0.75	-	2	transcript_id "Ledus.S1G388200.t1"; gene_id "Ledus.S1G388200"
Ledus.S1	AUGUSTUS	exon	31370589	31370809	.	-	.	transcript_id "Ledus.S1G388200.t1"; gene_id "Ledus.S1G388200"
Ledus.S1	AUGUSTUS	intron	31370810	31370925	.	-	.	transcript_id "Ledus.S1G388200.t1"; gene_id "Ledus.S1G388200"
Ledus.S1	AUGUSTUS	CDS	31370926	31370983	1	-	0	transcript_id "Ledus.S1G388200.t1"; gene_id "Ledus.S1G388200"
Ledus.S1	AUGUSTUS	exon	31370926	31370983	.	-	.	transcript_id "Ledus.S1G388200.t1"; gene_id "Ledus.S1G388200"
Ledus.S1	AUGUSTUS	intron	31370984	31371054	.	-	.	transcript_id "Ledus.S1G388200.t1"; gene_id "Ledus.S1G388200"
Ledus.S1	AUGUSTUS	CDS	31371055	31371327	0.7	-	0	transcript_id "Ledus.S1G388200.t1"; gene_id "Ledus.S1G388200"
Ledus.S1	AUGUSTUS	exon	31371055	31371327	.	-	.	transcript_id "Ledus.S1G388200.t1"; gene_id "Ledus.S1G388200"
Ledus.S1	AUGUSTUS	start_codon	31371325	31371327	.	-	0	transcript_id "Ledus.S1G388200.t1"; gene_id "Ledus.S1G388200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg64.t1 is derived from g9477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	186904	188180	.	-	.	Ledus.C8G002400
Ledus.C8	AUGUSTUS	transcript	186904	188180	.	-	.	transcript_id "Ledus.C8G002400.t1"; gene_id "Ledus.C8G002400"
Ledus.C8	AUGUSTUS	stop_codon	186901	186903	.	-	0	transcript_id "Ledus.C8G002400.t1"; gene_id "Ledus.C8G002400"
Ledus.C8	AUGUSTUS	CDS	186904	187800	0.27	-	0	transcript_id "Ledus.C8G002400.t1"; gene_id "Ledus.C8G002400"
Ledus.C8	AUGUSTUS	exon	186904	187800	.	-	.	transcript_id "Ledus.C8G002400.t1"; gene_id "Ledus.C8G002400"
Ledus.C8	AUGUSTUS	intron	187801	187883	.	-	.	transcript_id "Ledus.C8G002400.t1"; gene_id "Ledus.C8G002400"
Ledus.C8	AUGUSTUS	CDS	187884	188180	0.31	-	0	transcript_id "Ledus.C8G002400.t1"; gene_id "Ledus.C8G002400"
Ledus.C8	AUGUSTUS	exon	187884	188180	.	-	.	transcript_id "Ledus.C8G002400.t1"; gene_id "Ledus.C8G002400"
Ledus.C8	AUGUSTUS	start_codon	188178	188180	.	-	0	transcript_id "Ledus.C8G002400.t1"; gene_id "Ledus.C8G002400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2758.t1 is derived from g192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3215682	3216164	.	-	.	Ledus.S1G017900
Ledus.S1	AUGUSTUS	transcript	3215682	3216164	.	-	.	transcript_id "Ledus.S1G017900.t1"; gene_id "Ledus.S1G017900"
Ledus.S1	AUGUSTUS	stop_codon	3215679	3215681	.	-	0	transcript_id "Ledus.S1G017900.t1"; gene_id "Ledus.S1G017900"
Ledus.S1	AUGUSTUS	CDS	3215682	3215911	0.35	-	2	transcript_id "Ledus.S1G017900.t1"; gene_id "Ledus.S1G017900"
Ledus.S1	AUGUSTUS	exon	3215682	3215911	.	-	.	transcript_id "Ledus.S1G017900.t1"; gene_id "Ledus.S1G017900"
Ledus.S1	AUGUSTUS	intron	3215912	3216085	.	-	.	transcript_id "Ledus.S1G017900.t1"; gene_id "Ledus.S1G017900"
Ledus.S1	AUGUSTUS	CDS	3216086	3216164	0.3	-	0	transcript_id "Ledus.S1G017900.t1"; gene_id "Ledus.S1G017900"
Ledus.S1	AUGUSTUS	exon	3216086	3216164	.	-	.	transcript_id "Ledus.S1G017900.t1"; gene_id "Ledus.S1G017900"
Ledus.S1	AUGUSTUS	start_codon	3216162	3216164	.	-	0	transcript_id "Ledus.S1G017900.t1"; gene_id "Ledus.S1G017900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12653.t1 is derived from g6275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13621440	13623711	.	+	.	Ledus.S4G180900
Ledus.S4	AUGUSTUS	transcript	13621440	13623711	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	start_codon	13621440	13621442	.	+	0	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	CDS	13621440	13621712	0.98	+	0	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	exon	13621440	13621712	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	intron	13621713	13621792	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	CDS	13621793	13621895	1	+	0	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	exon	13621793	13621895	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	intron	13621896	13622022	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	CDS	13622023	13622036	1	+	2	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	exon	13622023	13622036	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	intron	13622037	13622108	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	CDS	13622109	13622342	1	+	0	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	exon	13622109	13622342	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	intron	13622343	13622418	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	CDS	13622419	13622490	1	+	0	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	exon	13622419	13622490	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	intron	13622491	13622572	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	CDS	13622573	13622656	1	+	0	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	exon	13622573	13622656	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	intron	13622657	13622732	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	CDS	13622733	13622771	0.99	+	0	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	exon	13622733	13622771	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	intron	13622772	13622875	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	CDS	13622876	13622983	0.99	+	0	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	exon	13622876	13622983	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	intron	13622984	13623062	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	CDS	13623063	13623231	1	+	0	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	exon	13623063	13623231	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	intron	13623232	13623307	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	CDS	13623308	13623420	1	+	2	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	exon	13623308	13623420	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	intron	13623421	13623501	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	CDS	13623502	13623711	1	+	0	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	exon	13623502	13623711	.	+	.	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
Ledus.S4	AUGUSTUS	stop_codon	13623712	13623714	.	+	0	transcript_id "Ledus.S4G180900.t1"; gene_id "Ledus.S4G180900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8879.t1 is derived from g9909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2780846	2790424	.	+	.	Ledus.S3G035600
Ledus.S3	AUGUSTUS	transcript	2780846	2790424	.	+	.	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	start_codon	2780846	2780848	.	+	0	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	CDS	2780846	2789650	0.47	+	0	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	exon	2780846	2789650	.	+	.	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	intron	2789651	2789784	.	+	.	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	CDS	2789785	2789862	0.66	+	0	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	exon	2789785	2789862	.	+	.	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	intron	2789863	2790113	.	+	.	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	CDS	2790114	2790136	0.98	+	0	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	exon	2790114	2790136	.	+	.	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	intron	2790137	2790254	.	+	.	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	CDS	2790255	2790303	0.98	+	1	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	exon	2790255	2790303	.	+	.	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	intron	2790304	2790388	.	+	.	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	CDS	2790389	2790424	1	+	0	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	exon	2790389	2790424	.	+	.	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
Ledus.S3	AUGUSTUS	stop_codon	2790425	2790427	.	+	0	transcript_id "Ledus.S3G035600.t1"; gene_id "Ledus.S3G035600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12435.t1 is derived from g6056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12003798	12006089	.	-	.	Ledus.S4G159100
Ledus.S4	AUGUSTUS	transcript	12003798	12006089	.	-	.	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	stop_codon	12003795	12003797	.	-	0	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	CDS	12003798	12003842	0.99	-	0	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	exon	12003798	12003842	.	-	.	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	intron	12003843	12003954	.	-	.	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	CDS	12003955	12004032	1	-	0	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	exon	12003955	12004032	.	-	.	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	intron	12004033	12004121	.	-	.	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	CDS	12004122	12004509	1	-	1	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	exon	12004122	12004509	.	-	.	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	intron	12004510	12004662	.	-	.	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	CDS	12004663	12005175	1	-	1	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	exon	12004663	12005175	.	-	.	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	intron	12005176	12006084	.	-	.	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	CDS	12006085	12006089	0.97	-	0	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	exon	12006085	12006089	.	-	.	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
Ledus.S4	AUGUSTUS	start_codon	12006087	12006089	.	-	0	transcript_id "Ledus.S4G159100.t1"; gene_id "Ledus.S4G159100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13155.t1 is derived from g6965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7594515	7595255	.	+	.	Ledus.S6G021700
Ledus.S6	AUGUSTUS	transcript	7594515	7595255	.	+	.	transcript_id "Ledus.S6G021700.t1"; gene_id "Ledus.S6G021700"
Ledus.S6	AUGUSTUS	start_codon	7594515	7594517	.	+	0	transcript_id "Ledus.S6G021700.t1"; gene_id "Ledus.S6G021700"
Ledus.S6	AUGUSTUS	CDS	7594515	7595255	0.98	+	0	transcript_id "Ledus.S6G021700.t1"; gene_id "Ledus.S6G021700"
Ledus.S6	AUGUSTUS	exon	7594515	7595255	.	+	.	transcript_id "Ledus.S6G021700.t1"; gene_id "Ledus.S6G021700"
Ledus.S6	AUGUSTUS	stop_codon	7595256	7595258	.	+	0	transcript_id "Ledus.S6G021700.t1"; gene_id "Ledus.S6G021700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11116.t1 is derived from g4734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1924212	1924707	.	-	.	Ledus.S4G027200
Ledus.S4	AUGUSTUS	transcript	1924212	1924707	.	-	.	transcript_id "Ledus.S4G027200.t1"; gene_id "Ledus.S4G027200"
Ledus.S4	AUGUSTUS	stop_codon	1924209	1924211	.	-	0	transcript_id "Ledus.S4G027200.t1"; gene_id "Ledus.S4G027200"
Ledus.S4	AUGUSTUS	CDS	1924212	1924339	0.97	-	2	transcript_id "Ledus.S4G027200.t1"; gene_id "Ledus.S4G027200"
Ledus.S4	AUGUSTUS	exon	1924212	1924339	.	-	.	transcript_id "Ledus.S4G027200.t1"; gene_id "Ledus.S4G027200"
Ledus.S4	AUGUSTUS	intron	1924340	1924434	.	-	.	transcript_id "Ledus.S4G027200.t1"; gene_id "Ledus.S4G027200"
Ledus.S4	AUGUSTUS	CDS	1924435	1924522	1	-	0	transcript_id "Ledus.S4G027200.t1"; gene_id "Ledus.S4G027200"
Ledus.S4	AUGUSTUS	exon	1924435	1924522	.	-	.	transcript_id "Ledus.S4G027200.t1"; gene_id "Ledus.S4G027200"
Ledus.S4	AUGUSTUS	intron	1924523	1924593	.	-	.	transcript_id "Ledus.S4G027200.t1"; gene_id "Ledus.S4G027200"
Ledus.S4	AUGUSTUS	CDS	1924594	1924707	0.89	-	0	transcript_id "Ledus.S4G027200.t1"; gene_id "Ledus.S4G027200"
Ledus.S4	AUGUSTUS	exon	1924594	1924707	.	-	.	transcript_id "Ledus.S4G027200.t1"; gene_id "Ledus.S4G027200"
Ledus.S4	AUGUSTUS	start_codon	1924705	1924707	.	-	0	transcript_id "Ledus.S4G027200.t1"; gene_id "Ledus.S4G027200"
# This transcript jg6314.t2 is derived from g3757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6314.t3 is derived from g3757.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6314.t4 is derived from g3757.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6315.t1 is derived from g3758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30456011	30456421	.	-	.	Ledus.S1G373600
Ledus.S1	AUGUSTUS	transcript	30456011	30456421	.	-	.	transcript_id "Ledus.S1G373600.t1"; gene_id "Ledus.S1G373600"
Ledus.S1	AUGUSTUS	stop_codon	30456008	30456010	.	-	0	transcript_id "Ledus.S1G373600.t1"; gene_id "Ledus.S1G373600"
Ledus.S1	AUGUSTUS	CDS	30456011	30456421	1	-	0	transcript_id "Ledus.S1G373600.t1"; gene_id "Ledus.S1G373600"
Ledus.S1	AUGUSTUS	exon	30456011	30456421	.	-	.	transcript_id "Ledus.S1G373600.t1"; gene_id "Ledus.S1G373600"
Ledus.S1	AUGUSTUS	start_codon	30456419	30456421	.	-	0	transcript_id "Ledus.S1G373600.t1"; gene_id "Ledus.S1G373600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5811.t1 is derived from g3253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27058730	27063500	.	+	.	Ledus.S1G323200
Ledus.S1	AUGUSTUS	transcript	27058730	27063500	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	start_codon	27058730	27058732	.	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27058730	27058762	0.59	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27058730	27058762	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27058763	27058916	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27058917	27058972	0.6	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27058917	27058972	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27058973	27059093	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27059094	27059268	0.29	+	1	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27059094	27059268	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27059269	27059426	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27059427	27060493	1	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27059427	27060493	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27060494	27060606	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27060607	27060931	0.87	+	1	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27060607	27060931	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27060932	27061038	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27061039	27061134	0.99	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27061039	27061134	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27061135	27061360	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27061361	27061660	1	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27061361	27061660	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27061661	27061832	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27061833	27061946	1	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27061833	27061946	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27061947	27062061	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27062062	27062133	1	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27062062	27062133	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27062134	27062343	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27062344	27062430	1	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27062344	27062430	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27062431	27062619	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27062620	27062691	0.52	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27062620	27062691	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27062692	27062814	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27062815	27062907	0.8	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27062815	27062907	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27062908	27063018	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27063019	27063135	1	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27063019	27063135	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27063136	27063251	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27063252	27063320	0.86	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27063252	27063320	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	intron	27063321	27063428	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	CDS	27063429	27063500	0.29	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	exon	27063429	27063500	.	+	.	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
Ledus.S1	AUGUSTUS	stop_codon	27063501	27063503	.	+	0	transcript_id "Ledus.S1G323200.t1"; gene_id "Ledus.S1G323200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12410.t1 is derived from g6031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11861385	11863018	.	-	.	Ledus.S4G156600
Ledus.S4	AUGUSTUS	transcript	11861385	11863018	.	-	.	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	stop_codon	11861382	11861384	.	-	0	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	CDS	11861385	11861601	1	-	1	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	exon	11861385	11861601	.	-	.	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	intron	11861602	11861684	.	-	.	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	CDS	11861685	11861902	0.99	-	0	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	exon	11861685	11861902	.	-	.	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	intron	11861903	11861988	.	-	.	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	CDS	11861989	11862396	0.92	-	0	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	exon	11861989	11862396	.	-	.	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	intron	11862397	11862468	.	-	.	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	CDS	11862469	11862668	1	-	2	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	exon	11862469	11862668	.	-	.	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	intron	11862669	11862759	.	-	.	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	CDS	11862760	11863018	0.44	-	0	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	exon	11862760	11863018	.	-	.	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
Ledus.S4	AUGUSTUS	start_codon	11863016	11863018	.	-	0	transcript_id "Ledus.S4G156600.t1"; gene_id "Ledus.S4G156600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6793.t1 is derived from g4237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34231663	34235633	.	+	.	Ledus.S1G421400
Ledus.S1	AUGUSTUS	transcript	34231663	34235633	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	start_codon	34231663	34231665	.	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34231663	34231814	0.89	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34231663	34231814	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34231815	34232060	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34232061	34232127	0.98	+	1	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34232061	34232127	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34232128	34232230	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34232231	34232323	0.97	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34232231	34232323	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34232324	34232441	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34232442	34232505	1	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34232442	34232505	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34232506	34232599	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34232600	34232751	1	+	2	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34232600	34232751	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34232752	34232843	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34232844	34232903	1	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34232844	34232903	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34232904	34233053	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34233054	34233140	1	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34233054	34233140	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34233141	34233221	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34233222	34233292	0.55	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34233222	34233292	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34233293	34233407	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34233408	34233507	0.97	+	1	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34233408	34233507	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34233508	34233597	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34233598	34233777	0.99	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34233598	34233777	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34233778	34233854	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34233855	34234046	1	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34233855	34234046	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34234047	34234201	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34234202	34234300	1	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34234202	34234300	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34234301	34234398	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34234399	34234476	1	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34234399	34234476	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34234477	34234554	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34234555	34234628	1	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34234555	34234628	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34234629	34234727	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34234728	34234899	1	+	1	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34234728	34234899	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34234900	34234985	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34234986	34235038	1	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34234986	34235038	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34235039	34235192	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34235193	34235349	1	+	1	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34235193	34235349	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34235350	34235437	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34235438	34235521	1	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34235438	34235521	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34235522	34235609	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34235610	34235633	1	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34235610	34235633	.	+	.	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	stop_codon	34235634	34235636	.	+	0	transcript_id "Ledus.S1G421400.t1"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	transcript	34231688	34235633	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	start_codon	34231688	34231690	.	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34231688	34231814	0.65	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34231688	34231814	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34231815	34231961	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34231962	34232131	0.41	+	2	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34231962	34232131	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34232132	34232230	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34232231	34232323	0.98	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34232231	34232323	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34232324	34232441	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34232442	34232505	1	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34232442	34232505	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34232506	34232599	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34232600	34232751	1	+	2	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34232600	34232751	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34232752	34232843	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34232844	34232903	1	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34232844	34232903	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34232904	34233053	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34233054	34233140	1	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34233054	34233140	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34233141	34233221	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34233222	34233292	0.54	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34233222	34233292	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34233293	34233407	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34233408	34233507	0.97	+	1	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34233408	34233507	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34233508	34233597	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34233598	34233777	1	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34233598	34233777	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34233778	34233854	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34233855	34234046	1	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34233855	34234046	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34234047	34234201	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34234202	34234300	1	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34234202	34234300	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34234301	34234398	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34234399	34234476	1	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34234399	34234476	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34234477	34234554	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34234555	34234628	1	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34234555	34234628	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34234629	34234727	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34234728	34234899	1	+	1	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34234728	34234899	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34234900	34234985	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34234986	34235038	1	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34234986	34235038	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34235039	34235192	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34235193	34235349	1	+	1	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34235193	34235349	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34235350	34235437	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34235438	34235521	1	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34235438	34235521	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	intron	34235522	34235609	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	CDS	34235610	34235633	1	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	exon	34235610	34235633	.	+	.	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
Ledus.S1	AUGUSTUS	stop_codon	34235634	34235636	.	+	0	transcript_id "Ledus.S1G421400.t2"; gene_id "Ledus.S1G421400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg6314.t1 is derived from g3757.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30450225	30455759	.	+	.	Ledus.S1G373500
Ledus.S1	AUGUSTUS	transcript	30450225	30450564	.	+	.	transcript_id "Ledus.S1G373500.t1"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	start_codon	30450225	30450227	.	+	0	transcript_id "Ledus.S1G373500.t1"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	CDS	30450225	30450479	0.62	+	0	transcript_id "Ledus.S1G373500.t1"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	exon	30450225	30450479	.	+	.	transcript_id "Ledus.S1G373500.t1"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	intron	30450480	30450546	.	+	.	transcript_id "Ledus.S1G373500.t1"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	CDS	30450547	30450564	0.67	+	0	transcript_id "Ledus.S1G373500.t1"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	exon	30450547	30450564	.	+	.	transcript_id "Ledus.S1G373500.t1"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	stop_codon	30450565	30450567	.	+	0	transcript_id "Ledus.S1G373500.t1"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	transcript	30450225	30455759	.	+	.	transcript_id "Ledus.S1G373500.t2"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	start_codon	30450225	30450227	.	+	0	transcript_id "Ledus.S1G373500.t2"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	CDS	30450225	30455759	0.94	+	0	transcript_id "Ledus.S1G373500.t2"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	exon	30450225	30455759	.	+	.	transcript_id "Ledus.S1G373500.t2"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	stop_codon	30455760	30455762	.	+	0	transcript_id "Ledus.S1G373500.t2"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	transcript	30451506	30455759	.	+	.	transcript_id "Ledus.S1G373500.t3"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	start_codon	30451506	30451508	.	+	0	transcript_id "Ledus.S1G373500.t3"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	CDS	30451506	30455759	0.93	+	0	transcript_id "Ledus.S1G373500.t3"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	exon	30451506	30455759	.	+	.	transcript_id "Ledus.S1G373500.t3"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	stop_codon	30455760	30455762	.	+	0	transcript_id "Ledus.S1G373500.t3"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	transcript	30452241	30455759	.	+	.	transcript_id "Ledus.S1G373500.t4"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	start_codon	30452241	30452243	.	+	0	transcript_id "Ledus.S1G373500.t4"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	CDS	30452241	30455759	0.49	+	0	transcript_id "Ledus.S1G373500.t4"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	exon	30452241	30455759	.	+	.	transcript_id "Ledus.S1G373500.t4"; gene_id "Ledus.S1G373500"
Ledus.S1	AUGUSTUS	stop_codon	30455760	30455762	.	+	0	transcript_id "Ledus.S1G373500.t4"; gene_id "Ledus.S1G373500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4907.t1 is derived from g2345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20596826	20597377	.	-	.	Ledus.S1G232800
Ledus.S1	AUGUSTUS	transcript	20596826	20597377	.	-	.	transcript_id "Ledus.S1G232800.t1"; gene_id "Ledus.S1G232800"
Ledus.S1	AUGUSTUS	stop_codon	20596823	20596825	.	-	0	transcript_id "Ledus.S1G232800.t1"; gene_id "Ledus.S1G232800"
Ledus.S1	AUGUSTUS	CDS	20596826	20597377	0.94	-	0	transcript_id "Ledus.S1G232800.t1"; gene_id "Ledus.S1G232800"
Ledus.S1	AUGUSTUS	exon	20596826	20597377	.	-	.	transcript_id "Ledus.S1G232800.t1"; gene_id "Ledus.S1G232800"
Ledus.S1	AUGUSTUS	start_codon	20597375	20597377	.	-	0	transcript_id "Ledus.S1G232800.t1"; gene_id "Ledus.S1G232800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2802.t1 is derived from g236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3850523	3851647	.	+	.	Ledus.S1G022300
Ledus.S1	AUGUSTUS	transcript	3850523	3851647	.	+	.	transcript_id "Ledus.S1G022300.t1"; gene_id "Ledus.S1G022300"
Ledus.S1	AUGUSTUS	start_codon	3850523	3850525	.	+	0	transcript_id "Ledus.S1G022300.t1"; gene_id "Ledus.S1G022300"
Ledus.S1	AUGUSTUS	CDS	3850523	3851647	1	+	0	transcript_id "Ledus.S1G022300.t1"; gene_id "Ledus.S1G022300"
Ledus.S1	AUGUSTUS	exon	3850523	3851647	.	+	.	transcript_id "Ledus.S1G022300.t1"; gene_id "Ledus.S1G022300"
Ledus.S1	AUGUSTUS	stop_codon	3851648	3851650	.	+	0	transcript_id "Ledus.S1G022300.t1"; gene_id "Ledus.S1G022300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5241.t1 is derived from g2680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22636128	22638774	.	+	.	Ledus.S1G266200
Ledus.S1	AUGUSTUS	transcript	22636128	22638774	.	+	.	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	start_codon	22636128	22636130	.	+	0	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	CDS	22636128	22638161	0.71	+	0	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	exon	22636128	22638161	.	+	.	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	intron	22638162	22638282	.	+	.	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	CDS	22638283	22638317	0.59	+	0	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	exon	22638283	22638317	.	+	.	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	intron	22638318	22638471	.	+	.	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	CDS	22638472	22638491	0.75	+	1	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	exon	22638472	22638491	.	+	.	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	intron	22638492	22638592	.	+	.	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	CDS	22638593	22638668	0.72	+	2	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	exon	22638593	22638668	.	+	.	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	intron	22638669	22638770	.	+	.	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	CDS	22638771	22638774	0.76	+	1	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	exon	22638771	22638774	.	+	.	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
Ledus.S1	AUGUSTUS	stop_codon	22638775	22638777	.	+	0	transcript_id "Ledus.S1G266200.t1"; gene_id "Ledus.S1G266200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7978.t1 is derived from g12649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8303620	8307291	.	-	.	Ledus.S5G075600
Ledus.S5	AUGUSTUS	transcript	8303620	8307291	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	stop_codon	8303617	8303619	.	-	0	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8303620	8303904	1	-	0	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8303620	8303904	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8303905	8304025	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8304026	8304131	1	-	1	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8304026	8304131	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8304132	8304229	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8304230	8304287	1	-	2	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8304230	8304287	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8304288	8304385	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8304386	8304566	1	-	0	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8304386	8304566	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8304567	8304660	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8304661	8304834	1	-	0	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8304661	8304834	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8304835	8304963	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8304964	8305138	1	-	1	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8304964	8305138	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8305139	8305300	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8305301	8305359	1	-	0	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8305301	8305359	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8305360	8305491	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8305492	8305593	1	-	0	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8305492	8305593	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8305594	8305794	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8305795	8305862	1	-	2	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8305795	8305862	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8305863	8306015	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8306016	8306119	1	-	1	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8306016	8306119	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8306120	8306210	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8306211	8306256	1	-	2	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8306211	8306256	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8306257	8306335	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8306336	8306382	1	-	1	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8306336	8306382	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8306383	8306464	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8306465	8306538	1	-	0	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8306465	8306538	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8306539	8306646	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8306647	8306736	0.97	-	0	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8306647	8306736	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	intron	8306737	8306823	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	CDS	8306824	8307291	0.84	-	0	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	exon	8306824	8307291	.	-	.	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
Ledus.S5	AUGUSTUS	start_codon	8307289	8307291	.	-	0	transcript_id "Ledus.S5G075600.t1"; gene_id "Ledus.S5G075600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5339.t1 is derived from g2778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23436286	23438288	.	+	.	Ledus.S1G276000
Ledus.S1	AUGUSTUS	transcript	23436286	23438288	.	+	.	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	start_codon	23436286	23436288	.	+	0	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	CDS	23436286	23436588	0.7	+	0	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	exon	23436286	23436588	.	+	.	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	intron	23436589	23436764	.	+	.	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	CDS	23436765	23437283	0.46	+	0	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	exon	23436765	23437283	.	+	.	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	intron	23437284	23437356	.	+	.	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	CDS	23437357	23438027	1	+	0	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	exon	23437357	23438027	.	+	.	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	intron	23438028	23438119	.	+	.	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	CDS	23438120	23438288	1	+	1	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	exon	23438120	23438288	.	+	.	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
Ledus.S1	AUGUSTUS	stop_codon	23438289	23438291	.	+	0	transcript_id "Ledus.S1G276000.t1"; gene_id "Ledus.S1G276000"
# This transcript jg5285.t2 is derived from g2724.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5286.t1 is derived from g2725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22856414	22858045	.	-	.	Ledus.S1G270700
Ledus.S1	AUGUSTUS	transcript	22856414	22858045	.	-	.	transcript_id "Ledus.S1G270700.t1"; gene_id "Ledus.S1G270700"
Ledus.S1	AUGUSTUS	stop_codon	22856411	22856413	.	-	0	transcript_id "Ledus.S1G270700.t1"; gene_id "Ledus.S1G270700"
Ledus.S1	AUGUSTUS	CDS	22856414	22856532	0.75	-	2	transcript_id "Ledus.S1G270700.t1"; gene_id "Ledus.S1G270700"
Ledus.S1	AUGUSTUS	exon	22856414	22856532	.	-	.	transcript_id "Ledus.S1G270700.t1"; gene_id "Ledus.S1G270700"
Ledus.S1	AUGUSTUS	intron	22856533	22856724	.	-	.	transcript_id "Ledus.S1G270700.t1"; gene_id "Ledus.S1G270700"
Ledus.S1	AUGUSTUS	CDS	22856725	22857446	0.62	-	1	transcript_id "Ledus.S1G270700.t1"; gene_id "Ledus.S1G270700"
Ledus.S1	AUGUSTUS	exon	22856725	22857446	.	-	.	transcript_id "Ledus.S1G270700.t1"; gene_id "Ledus.S1G270700"
Ledus.S1	AUGUSTUS	intron	22857447	22857695	.	-	.	transcript_id "Ledus.S1G270700.t1"; gene_id "Ledus.S1G270700"
Ledus.S1	AUGUSTUS	CDS	22857696	22858045	0.77	-	0	transcript_id "Ledus.S1G270700.t1"; gene_id "Ledus.S1G270700"
Ledus.S1	AUGUSTUS	exon	22857696	22858045	.	-	.	transcript_id "Ledus.S1G270700.t1"; gene_id "Ledus.S1G270700"
Ledus.S1	AUGUSTUS	start_codon	22858043	22858045	.	-	0	transcript_id "Ledus.S1G270700.t1"; gene_id "Ledus.S1G270700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg463.t1 is derived from g7324.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2729670	2730005	.	+	.	Ledus.S2G034500
Ledus.S2	AUGUSTUS	transcript	2729670	2730005	.	+	.	transcript_id "Ledus.S2G034500.t1"; gene_id "Ledus.S2G034500"
Ledus.S2	AUGUSTUS	start_codon	2729670	2729672	.	+	0	transcript_id "Ledus.S2G034500.t1"; gene_id "Ledus.S2G034500"
Ledus.S2	AUGUSTUS	CDS	2729670	2730005	0.41	+	0	transcript_id "Ledus.S2G034500.t1"; gene_id "Ledus.S2G034500"
Ledus.S2	AUGUSTUS	exon	2729670	2730005	.	+	.	transcript_id "Ledus.S2G034500.t1"; gene_id "Ledus.S2G034500"
Ledus.S2	AUGUSTUS	stop_codon	2730006	2730008	.	+	0	transcript_id "Ledus.S2G034500.t1"; gene_id "Ledus.S2G034500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3277.t1 is derived from g712.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7221686	7222922	.	-	.	Ledus.S1G069800
Ledus.S1	AUGUSTUS	transcript	7221686	7222922	.	-	.	transcript_id "Ledus.S1G069800.t1"; gene_id "Ledus.S1G069800"
Ledus.S1	AUGUSTUS	stop_codon	7221683	7221685	.	-	0	transcript_id "Ledus.S1G069800.t1"; gene_id "Ledus.S1G069800"
Ledus.S1	AUGUSTUS	CDS	7221686	7222699	0.82	-	0	transcript_id "Ledus.S1G069800.t1"; gene_id "Ledus.S1G069800"
Ledus.S1	AUGUSTUS	exon	7221686	7222699	.	-	.	transcript_id "Ledus.S1G069800.t1"; gene_id "Ledus.S1G069800"
Ledus.S1	AUGUSTUS	intron	7222700	7222880	.	-	.	transcript_id "Ledus.S1G069800.t1"; gene_id "Ledus.S1G069800"
Ledus.S1	AUGUSTUS	CDS	7222881	7222922	0.9	-	0	transcript_id "Ledus.S1G069800.t1"; gene_id "Ledus.S1G069800"
Ledus.S1	AUGUSTUS	exon	7222881	7222922	.	-	.	transcript_id "Ledus.S1G069800.t1"; gene_id "Ledus.S1G069800"
Ledus.S1	AUGUSTUS	start_codon	7222920	7222922	.	-	0	transcript_id "Ledus.S1G069800.t1"; gene_id "Ledus.S1G069800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2595.t1 is derived from g28.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	190836	191741	.	+	.	Ledus.S1G001600
Ledus.S1	AUGUSTUS	transcript	190836	191741	.	+	.	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	start_codon	190836	190838	.	+	0	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	CDS	190836	190904	0.47	+	0	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	exon	190836	190904	.	+	.	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	intron	190905	190998	.	+	.	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	CDS	190999	191146	0.94	+	0	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	exon	190999	191146	.	+	.	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	intron	191147	191240	.	+	.	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	CDS	191241	191353	1	+	2	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	exon	191241	191353	.	+	.	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	intron	191354	191439	.	+	.	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	CDS	191440	191526	1	+	0	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	exon	191440	191526	.	+	.	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	intron	191527	191717	.	+	.	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	CDS	191718	191741	0.81	+	0	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	exon	191718	191741	.	+	.	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
Ledus.S1	AUGUSTUS	stop_codon	191742	191744	.	+	0	transcript_id "Ledus.S1G001600.t1"; gene_id "Ledus.S1G001600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9294.t1 is derived from g10324.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5821377	5822798	.	+	.	Ledus.S3G077100
Ledus.S3	AUGUSTUS	transcript	5821377	5822798	.	+	.	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	start_codon	5821377	5821379	.	+	0	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	CDS	5821377	5821578	0.93	+	0	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	exon	5821377	5821578	.	+	.	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	intron	5821579	5821668	.	+	.	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	CDS	5821669	5821751	1	+	2	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	exon	5821669	5821751	.	+	.	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	intron	5821752	5821853	.	+	.	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	CDS	5821854	5822066	1	+	0	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	exon	5821854	5822066	.	+	.	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	intron	5822067	5822175	.	+	.	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	CDS	5822176	5822285	1	+	0	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	exon	5822176	5822285	.	+	.	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	intron	5822286	5822437	.	+	.	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	CDS	5822438	5822568	1	+	1	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	exon	5822438	5822568	.	+	.	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	intron	5822569	5822775	.	+	.	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	CDS	5822776	5822798	1	+	2	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	exon	5822776	5822798	.	+	.	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
Ledus.S3	AUGUSTUS	stop_codon	5822799	5822801	.	+	0	transcript_id "Ledus.S3G077100.t1"; gene_id "Ledus.S3G077100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4333.t1 is derived from g1769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16425762	16426644	.	+	.	Ledus.S1G175400
Ledus.S1	AUGUSTUS	transcript	16425762	16426644	.	+	.	transcript_id "Ledus.S1G175400.t1"; gene_id "Ledus.S1G175400"
Ledus.S1	AUGUSTUS	start_codon	16425762	16425764	.	+	0	transcript_id "Ledus.S1G175400.t1"; gene_id "Ledus.S1G175400"
Ledus.S1	AUGUSTUS	CDS	16425762	16426466	0.23	+	0	transcript_id "Ledus.S1G175400.t1"; gene_id "Ledus.S1G175400"
Ledus.S1	AUGUSTUS	exon	16425762	16426466	.	+	.	transcript_id "Ledus.S1G175400.t1"; gene_id "Ledus.S1G175400"
Ledus.S1	AUGUSTUS	intron	16426467	16426584	.	+	.	transcript_id "Ledus.S1G175400.t1"; gene_id "Ledus.S1G175400"
Ledus.S1	AUGUSTUS	CDS	16426585	16426644	0.39	+	0	transcript_id "Ledus.S1G175400.t1"; gene_id "Ledus.S1G175400"
Ledus.S1	AUGUSTUS	exon	16426585	16426644	.	+	.	transcript_id "Ledus.S1G175400.t1"; gene_id "Ledus.S1G175400"
Ledus.S1	AUGUSTUS	stop_codon	16426645	16426647	.	+	0	transcript_id "Ledus.S1G175400.t1"; gene_id "Ledus.S1G175400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6585.t1 is derived from g4028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32506160	32517962	.	+	.	Ledus.S1G400600
Ledus.S1	AUGUSTUS	transcript	32506160	32517962	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	start_codon	32506160	32506162	.	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32506160	32506282	0.67	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32506160	32506282	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32506283	32506370	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32506371	32506538	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32506371	32506538	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32506539	32506615	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32506616	32506669	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32506616	32506669	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32506670	32506737	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32506738	32506897	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32506738	32506897	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32506898	32506994	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32506995	32507087	1	+	2	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32506995	32507087	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32507088	32507162	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32507163	32507405	1	+	2	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32507163	32507405	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32507406	32507481	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32507482	32507609	1	+	2	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32507482	32507609	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32507610	32507674	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32507675	32508002	0.93	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32507675	32508002	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32508003	32508106	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32508107	32508535	0.96	+	2	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32508107	32508535	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32508536	32508619	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32508620	32508885	1	+	2	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32508620	32508885	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32508886	32508965	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32508966	32509208	0.45	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32508966	32509208	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32509209	32509335	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32509336	32509395	0.46	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32509336	32509395	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32509396	32509905	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32509906	32510400	0.98	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32509906	32510400	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32510401	32510499	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32510500	32510742	0.96	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32510500	32510742	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32510743	32510870	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32510871	32511521	0.87	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32510871	32511521	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32511522	32511627	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32511628	32511990	0.87	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32511628	32511990	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32511991	32512067	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32512068	32513045	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32512068	32513045	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32513046	32513122	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32513123	32513458	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32513123	32513458	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32513459	32513539	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32513540	32513936	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32513540	32513936	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32513937	32514031	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32514032	32514256	1	+	2	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32514032	32514256	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32514257	32514426	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32514427	32515220	1	+	2	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32514427	32515220	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32515221	32515336	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32515337	32515651	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32515337	32515651	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32515652	32515783	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32515784	32515918	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32515784	32515918	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32515919	32516080	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32516081	32516206	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32516081	32516206	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32516207	32516285	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32516286	32516399	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32516286	32516399	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32516400	32516496	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32516497	32516637	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32516497	32516637	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32516638	32516850	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32516851	32516903	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32516851	32516903	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32516904	32517014	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32517015	32517414	0.64	+	1	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32517015	32517414	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32517415	32517500	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32517501	32517572	1	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32517501	32517572	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	intron	32517573	32517665	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	CDS	32517666	32517962	0.95	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	exon	32517666	32517962	.	+	.	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
Ledus.S1	AUGUSTUS	stop_codon	32517963	32517965	.	+	0	transcript_id "Ledus.S1G400600.t1"; gene_id "Ledus.S1G400600"
# This transcript jg9071.t2 is derived from g10101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9072.t1 is derived from g10102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4364237	4365767	.	-	.	Ledus.S3G054900
Ledus.S3	AUGUSTUS	transcript	4364237	4365767	.	-	.	transcript_id "Ledus.S3G054900.t1"; gene_id "Ledus.S3G054900"
Ledus.S3	AUGUSTUS	stop_codon	4364234	4364236	.	-	0	transcript_id "Ledus.S3G054900.t1"; gene_id "Ledus.S3G054900"
Ledus.S3	AUGUSTUS	CDS	4364237	4364312	0.93	-	1	transcript_id "Ledus.S3G054900.t1"; gene_id "Ledus.S3G054900"
Ledus.S3	AUGUSTUS	exon	4364237	4364312	.	-	.	transcript_id "Ledus.S3G054900.t1"; gene_id "Ledus.S3G054900"
Ledus.S3	AUGUSTUS	intron	4364313	4364409	.	-	.	transcript_id "Ledus.S3G054900.t1"; gene_id "Ledus.S3G054900"
Ledus.S3	AUGUSTUS	CDS	4364410	4365767	0.64	-	0	transcript_id "Ledus.S3G054900.t1"; gene_id "Ledus.S3G054900"
Ledus.S3	AUGUSTUS	exon	4364410	4365767	.	-	.	transcript_id "Ledus.S3G054900.t1"; gene_id "Ledus.S3G054900"
Ledus.S3	AUGUSTUS	start_codon	4365765	4365767	.	-	0	transcript_id "Ledus.S3G054900.t1"; gene_id "Ledus.S3G054900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3725.t1 is derived from g1161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11195156	11200761	.	-	.	Ledus.S1G114600
Ledus.S1	AUGUSTUS	transcript	11195156	11200761	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	stop_codon	11195153	11195155	.	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11195156	11195302	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11195156	11195302	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11195303	11195410	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11195411	11195551	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11195411	11195551	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11195552	11195638	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11195639	11195821	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11195639	11195821	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11195822	11195907	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11195908	11195982	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11195908	11195982	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11195983	11196121	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11196122	11196199	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11196122	11196199	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11196200	11196346	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11196347	11196418	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11196347	11196418	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11196419	11196575	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11196576	11196640	1	-	2	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11196576	11196640	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11196641	11196798	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11196799	11196883	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11196799	11196883	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11196884	11197025	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11197026	11197121	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11197026	11197121	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11197122	11197209	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11197210	11197284	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11197210	11197284	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11197285	11197439	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11197440	11197535	0.84	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11197440	11197535	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11197536	11197651	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11197652	11197714	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11197652	11197714	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11197715	11198154	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11198155	11198244	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11198155	11198244	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11198245	11198369	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11198370	11198436	1	-	1	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11198370	11198436	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11198437	11198628	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11198629	11198756	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11198629	11198756	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11198757	11198851	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11198852	11198987	1	-	1	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11198852	11198987	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11198988	11199169	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11199170	11199268	1	-	1	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11199170	11199268	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11199269	11199368	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11199369	11199443	0.96	-	1	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11199369	11199443	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11199444	11199552	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11199553	11199764	0.96	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11199553	11199764	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11199765	11199920	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11199921	11199986	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11199921	11199986	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11199987	11200074	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11200075	11200131	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11200075	11200131	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11200132	11200226	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11200227	11200352	1	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11200227	11200352	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11200353	11200432	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11200433	11200530	1	-	2	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11200433	11200530	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	intron	11200531	11200616	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	CDS	11200617	11200761	0.76	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	exon	11200617	11200761	.	-	.	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
Ledus.S1	AUGUSTUS	start_codon	11200759	11200761	.	-	0	transcript_id "Ledus.S1G114600.t1"; gene_id "Ledus.S1G114600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3613.t1 is derived from g1049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10217558	10218405	.	+	.	Ledus.S1G103400
Ledus.S1	AUGUSTUS	transcript	10217558	10218405	.	+	.	transcript_id "Ledus.S1G103400.t1"; gene_id "Ledus.S1G103400"
Ledus.S1	AUGUSTUS	start_codon	10217558	10217560	.	+	0	transcript_id "Ledus.S1G103400.t1"; gene_id "Ledus.S1G103400"
Ledus.S1	AUGUSTUS	CDS	10217558	10218220	0.76	+	0	transcript_id "Ledus.S1G103400.t1"; gene_id "Ledus.S1G103400"
Ledus.S1	AUGUSTUS	exon	10217558	10218220	.	+	.	transcript_id "Ledus.S1G103400.t1"; gene_id "Ledus.S1G103400"
Ledus.S1	AUGUSTUS	intron	10218221	10218321	.	+	.	transcript_id "Ledus.S1G103400.t1"; gene_id "Ledus.S1G103400"
Ledus.S1	AUGUSTUS	CDS	10218322	10218405	1	+	0	transcript_id "Ledus.S1G103400.t1"; gene_id "Ledus.S1G103400"
Ledus.S1	AUGUSTUS	exon	10218322	10218405	.	+	.	transcript_id "Ledus.S1G103400.t1"; gene_id "Ledus.S1G103400"
Ledus.S1	AUGUSTUS	stop_codon	10218406	10218408	.	+	0	transcript_id "Ledus.S1G103400.t1"; gene_id "Ledus.S1G103400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9787.t1 is derived from g10817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9797248	9797457	.	+	.	Ledus.S3G126400
Ledus.S3	AUGUSTUS	transcript	9797248	9797457	.	+	.	transcript_id "Ledus.S3G126400.t1"; gene_id "Ledus.S3G126400"
Ledus.S3	AUGUSTUS	start_codon	9797248	9797250	.	+	0	transcript_id "Ledus.S3G126400.t1"; gene_id "Ledus.S3G126400"
Ledus.S3	AUGUSTUS	CDS	9797248	9797457	0.9	+	0	transcript_id "Ledus.S3G126400.t1"; gene_id "Ledus.S3G126400"
Ledus.S3	AUGUSTUS	exon	9797248	9797457	.	+	.	transcript_id "Ledus.S3G126400.t1"; gene_id "Ledus.S3G126400"
Ledus.S3	AUGUSTUS	stop_codon	9797458	9797460	.	+	0	transcript_id "Ledus.S3G126400.t1"; gene_id "Ledus.S3G126400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg820.t1 is derived from g7681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5317238	5317579	.	+	.	Ledus.S2G070200
Ledus.S2	AUGUSTUS	transcript	5317238	5317579	.	+	.	transcript_id "Ledus.S2G070200.t1"; gene_id "Ledus.S2G070200"
Ledus.S2	AUGUSTUS	start_codon	5317238	5317240	.	+	0	transcript_id "Ledus.S2G070200.t1"; gene_id "Ledus.S2G070200"
Ledus.S2	AUGUSTUS	CDS	5317238	5317579	0.73	+	0	transcript_id "Ledus.S2G070200.t1"; gene_id "Ledus.S2G070200"
Ledus.S2	AUGUSTUS	exon	5317238	5317579	.	+	.	transcript_id "Ledus.S2G070200.t1"; gene_id "Ledus.S2G070200"
Ledus.S2	AUGUSTUS	stop_codon	5317580	5317582	.	+	0	transcript_id "Ledus.S2G070200.t1"; gene_id "Ledus.S2G070200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9698.t1 is derived from g10728.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9096537	9098807	.	+	.	Ledus.S3G117500
Ledus.S3	AUGUSTUS	transcript	9096537	9097278	.	+	.	transcript_id "Ledus.S3G117500.t1"; gene_id "Ledus.S3G117500"
Ledus.S3	AUGUSTUS	start_codon	9096537	9096539	.	+	0	transcript_id "Ledus.S3G117500.t1"; gene_id "Ledus.S3G117500"
Ledus.S3	AUGUSTUS	CDS	9096537	9097006	0.53	+	0	transcript_id "Ledus.S3G117500.t1"; gene_id "Ledus.S3G117500"
Ledus.S3	AUGUSTUS	exon	9096537	9097006	.	+	.	transcript_id "Ledus.S3G117500.t1"; gene_id "Ledus.S3G117500"
Ledus.S3	AUGUSTUS	intron	9097007	9097262	.	+	.	transcript_id "Ledus.S3G117500.t1"; gene_id "Ledus.S3G117500"
Ledus.S3	AUGUSTUS	CDS	9097263	9097278	0.42	+	1	transcript_id "Ledus.S3G117500.t1"; gene_id "Ledus.S3G117500"
Ledus.S3	AUGUSTUS	exon	9097263	9097278	.	+	.	transcript_id "Ledus.S3G117500.t1"; gene_id "Ledus.S3G117500"
Ledus.S3	AUGUSTUS	stop_codon	9097279	9097281	.	+	0	transcript_id "Ledus.S3G117500.t1"; gene_id "Ledus.S3G117500"
Ledus.S3	AUGUSTUS	transcript	9096537	9098807	.	+	.	transcript_id "Ledus.S3G117500.t2"; gene_id "Ledus.S3G117500"
Ledus.S3	AUGUSTUS	start_codon	9096537	9096539	.	+	0	transcript_id "Ledus.S3G117500.t2"; gene_id "Ledus.S3G117500"
Ledus.S3	AUGUSTUS	CDS	9096537	9098807	0.53	+	0	transcript_id "Ledus.S3G117500.t2"; gene_id "Ledus.S3G117500"
Ledus.S3	AUGUSTUS	exon	9096537	9098807	.	+	.	transcript_id "Ledus.S3G117500.t2"; gene_id "Ledus.S3G117500"
Ledus.S3	AUGUSTUS	stop_codon	9098808	9098810	.	+	0	transcript_id "Ledus.S3G117500.t2"; gene_id "Ledus.S3G117500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg119.t1 is derived from g6980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3714	4449	.	+	.	Ledus.S2G000100
Ledus.S2	AUGUSTUS	transcript	3714	4449	.	+	.	transcript_id "Ledus.S2G000100.t1"; gene_id "Ledus.S2G000100"
Ledus.S2	AUGUSTUS	start_codon	3714	3716	.	+	0	transcript_id "Ledus.S2G000100.t1"; gene_id "Ledus.S2G000100"
Ledus.S2	AUGUSTUS	CDS	3714	3917	0.61	+	0	transcript_id "Ledus.S2G000100.t1"; gene_id "Ledus.S2G000100"
Ledus.S2	AUGUSTUS	exon	3714	3917	.	+	.	transcript_id "Ledus.S2G000100.t1"; gene_id "Ledus.S2G000100"
Ledus.S2	AUGUSTUS	intron	3918	4076	.	+	.	transcript_id "Ledus.S2G000100.t1"; gene_id "Ledus.S2G000100"
Ledus.S2	AUGUSTUS	CDS	4077	4148	0.83	+	0	transcript_id "Ledus.S2G000100.t1"; gene_id "Ledus.S2G000100"
Ledus.S2	AUGUSTUS	exon	4077	4148	.	+	.	transcript_id "Ledus.S2G000100.t1"; gene_id "Ledus.S2G000100"
Ledus.S2	AUGUSTUS	intron	4149	4266	.	+	.	transcript_id "Ledus.S2G000100.t1"; gene_id "Ledus.S2G000100"
Ledus.S2	AUGUSTUS	CDS	4267	4449	0.4	+	0	transcript_id "Ledus.S2G000100.t1"; gene_id "Ledus.S2G000100"
Ledus.S2	AUGUSTUS	exon	4267	4449	.	+	.	transcript_id "Ledus.S2G000100.t1"; gene_id "Ledus.S2G000100"
Ledus.S2	AUGUSTUS	stop_codon	4450	4452	.	+	0	transcript_id "Ledus.S2G000100.t1"; gene_id "Ledus.S2G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9001.t1 is derived from g10031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3793498	3793740	.	-	.	Ledus.S3G047800
Ledus.S3	AUGUSTUS	transcript	3793498	3793740	.	-	.	transcript_id "Ledus.S3G047800.t1"; gene_id "Ledus.S3G047800"
Ledus.S3	AUGUSTUS	stop_codon	3793495	3793497	.	-	0	transcript_id "Ledus.S3G047800.t1"; gene_id "Ledus.S3G047800"
Ledus.S3	AUGUSTUS	CDS	3793498	3793740	0.7	-	0	transcript_id "Ledus.S3G047800.t1"; gene_id "Ledus.S3G047800"
Ledus.S3	AUGUSTUS	exon	3793498	3793740	.	-	.	transcript_id "Ledus.S3G047800.t1"; gene_id "Ledus.S3G047800"
Ledus.S3	AUGUSTUS	start_codon	3793738	3793740	.	-	0	transcript_id "Ledus.S3G047800.t1"; gene_id "Ledus.S3G047800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1002.t1 is derived from g7863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6560285	6563364	.	+	.	Ledus.S2G088400
Ledus.S2	AUGUSTUS	transcript	6560285	6563364	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	start_codon	6560285	6560287	.	+	0	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	CDS	6560285	6560498	0.76	+	0	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	exon	6560285	6560498	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	intron	6560499	6560587	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	CDS	6560588	6560804	1	+	2	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	exon	6560588	6560804	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	intron	6560805	6560886	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	CDS	6560887	6561298	1	+	1	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	exon	6560887	6561298	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	intron	6561299	6561401	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	CDS	6561402	6561605	1	+	0	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	exon	6561402	6561605	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	intron	6561606	6561690	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	CDS	6561691	6561851	1	+	0	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	exon	6561691	6561851	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	intron	6561852	6561919	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	CDS	6561920	6562105	1	+	1	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	exon	6561920	6562105	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	intron	6562106	6562197	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	CDS	6562198	6562429	1	+	1	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	exon	6562198	6562429	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	intron	6562430	6562512	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	CDS	6562513	6562733	0.92	+	0	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	exon	6562513	6562733	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	intron	6562734	6562834	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	CDS	6562835	6562978	1	+	1	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	exon	6562835	6562978	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	intron	6562979	6563141	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	CDS	6563142	6563364	1	+	1	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	exon	6563142	6563364	.	+	.	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
Ledus.S2	AUGUSTUS	stop_codon	6563365	6563367	.	+	0	transcript_id "Ledus.S2G088400.t1"; gene_id "Ledus.S2G088400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6493.t1 is derived from g3936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31610711	31612727	.	-	.	Ledus.S1G391400
Ledus.S1	AUGUSTUS	transcript	31610845	31612727	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	stop_codon	31610842	31610844	.	-	0	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31610845	31610917	0.39	-	1	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31610845	31610917	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31610918	31610991	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31610992	31611057	1	-	1	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31610992	31611057	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31611058	31611664	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31611665	31611774	1	-	0	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31611665	31611774	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31611775	31611873	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31611874	31611957	1	-	0	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31611874	31611957	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31611958	31612071	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31612072	31612239	1	-	0	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31612072	31612239	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31612240	31612327	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31612328	31612450	1	-	0	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31612328	31612450	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31612451	31612538	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31612539	31612628	1	-	0	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31612539	31612628	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31612629	31612706	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31612707	31612727	0.95	-	0	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31612707	31612727	.	-	.	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	start_codon	31612725	31612727	.	-	0	transcript_id "Ledus.S1G391400.t1"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	transcript	31610711	31612727	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	stop_codon	31610708	31610710	.	-	0	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31610711	31610718	0.25	-	2	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31610711	31610718	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31610719	31610845	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31610846	31610917	0.55	-	2	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31610846	31610917	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31610918	31610991	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31610992	31611057	0.96	-	2	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31610992	31611057	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31611058	31611325	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31611326	31611402	0.85	-	1	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31611326	31611402	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31611403	31611664	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31611665	31611774	1	-	0	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31611665	31611774	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31611775	31611873	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31611874	31611957	1	-	0	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31611874	31611957	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31611958	31612071	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31612072	31612239	0.99	-	0	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31612072	31612239	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31612240	31612327	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31612328	31612450	1	-	0	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31612328	31612450	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31612451	31612538	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31612539	31612628	1	-	0	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31612539	31612628	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	intron	31612629	31612706	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	CDS	31612707	31612727	0.96	-	0	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	exon	31612707	31612727	.	-	.	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
Ledus.S1	AUGUSTUS	start_codon	31612725	31612727	.	-	0	transcript_id "Ledus.S1G391400.t2"; gene_id "Ledus.S1G391400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9863.t1 is derived from g10893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10665234	10667123	.	+	.	Ledus.S3G134000
Ledus.S3	AUGUSTUS	transcript	10665234	10667123	.	+	.	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	start_codon	10665234	10665236	.	+	0	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	CDS	10665234	10665309	0.94	+	0	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	exon	10665234	10665309	.	+	.	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	intron	10665310	10665388	.	+	.	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	CDS	10665389	10665927	1	+	2	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	exon	10665389	10665927	.	+	.	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	intron	10665928	10666027	.	+	.	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	CDS	10666028	10666573	1	+	0	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	exon	10666028	10666573	.	+	.	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	intron	10666574	10666655	.	+	.	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	CDS	10666656	10667123	0.99	+	0	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	exon	10666656	10667123	.	+	.	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
Ledus.S3	AUGUSTUS	stop_codon	10667124	10667126	.	+	0	transcript_id "Ledus.S3G134000.t1"; gene_id "Ledus.S3G134000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10378.t1 is derived from g11408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14592775	14594258	.	-	.	Ledus.S3G185500
Ledus.S3	AUGUSTUS	transcript	14592775	14594258	.	-	.	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	stop_codon	14592772	14592774	.	-	0	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	CDS	14592775	14592840	1	-	0	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	exon	14592775	14592840	.	-	.	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	intron	14592841	14592936	.	-	.	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	CDS	14592937	14593149	1	-	0	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	exon	14592937	14593149	.	-	.	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	intron	14593150	14593241	.	-	.	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	CDS	14593242	14593316	1	-	0	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	exon	14593242	14593316	.	-	.	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	intron	14593317	14593405	.	-	.	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	CDS	14593406	14593643	0.98	-	1	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	exon	14593406	14593643	.	-	.	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	intron	14593644	14593753	.	-	.	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	CDS	14593754	14593811	1	-	2	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	exon	14593754	14593811	.	-	.	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	intron	14593812	14594128	.	-	.	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	CDS	14594129	14594258	1	-	0	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	exon	14594129	14594258	.	-	.	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
Ledus.S3	AUGUSTUS	start_codon	14594256	14594258	.	-	0	transcript_id "Ledus.S3G185500.t1"; gene_id "Ledus.S3G185500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3394.t1 is derived from g829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8040018	8041861	.	-	.	Ledus.S1G081500
Ledus.S1	AUGUSTUS	transcript	8040018	8041861	.	-	.	transcript_id "Ledus.S1G081500.t1"; gene_id "Ledus.S1G081500"
Ledus.S1	AUGUSTUS	stop_codon	8040015	8040017	.	-	0	transcript_id "Ledus.S1G081500.t1"; gene_id "Ledus.S1G081500"
Ledus.S1	AUGUSTUS	CDS	8040018	8040171	0.9	-	1	transcript_id "Ledus.S1G081500.t1"; gene_id "Ledus.S1G081500"
Ledus.S1	AUGUSTUS	exon	8040018	8040171	.	-	.	transcript_id "Ledus.S1G081500.t1"; gene_id "Ledus.S1G081500"
Ledus.S1	AUGUSTUS	intron	8040172	8040305	.	-	.	transcript_id "Ledus.S1G081500.t1"; gene_id "Ledus.S1G081500"
Ledus.S1	AUGUSTUS	CDS	8040306	8041196	1	-	1	transcript_id "Ledus.S1G081500.t1"; gene_id "Ledus.S1G081500"
Ledus.S1	AUGUSTUS	exon	8040306	8041196	.	-	.	transcript_id "Ledus.S1G081500.t1"; gene_id "Ledus.S1G081500"
Ledus.S1	AUGUSTUS	intron	8041197	8041274	.	-	.	transcript_id "Ledus.S1G081500.t1"; gene_id "Ledus.S1G081500"
Ledus.S1	AUGUSTUS	CDS	8041275	8041861	1	-	0	transcript_id "Ledus.S1G081500.t1"; gene_id "Ledus.S1G081500"
Ledus.S1	AUGUSTUS	exon	8041275	8041861	.	-	.	transcript_id "Ledus.S1G081500.t1"; gene_id "Ledus.S1G081500"
Ledus.S1	AUGUSTUS	start_codon	8041859	8041861	.	-	0	transcript_id "Ledus.S1G081500.t1"; gene_id "Ledus.S1G081500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1862.t1 is derived from g8725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12998063	12999857	.	-	.	Ledus.S2G174400
Ledus.S2	AUGUSTUS	transcript	12998063	12999857	.	-	.	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	stop_codon	12998060	12998062	.	-	0	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	CDS	12998063	12998171	0.98	-	1	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	exon	12998063	12998171	.	-	.	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	intron	12998172	12998325	.	-	.	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	CDS	12998326	12998393	1	-	0	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	exon	12998326	12998393	.	-	.	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	intron	12998394	12998477	.	-	.	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	CDS	12998478	12998575	1	-	2	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	exon	12998478	12998575	.	-	.	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	intron	12998576	12998695	.	-	.	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	CDS	12998696	12998873	1	-	0	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	exon	12998696	12998873	.	-	.	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	intron	12998874	12999010	.	-	.	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	CDS	12999011	12999109	1	-	0	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	exon	12999011	12999109	.	-	.	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	intron	12999110	12999308	.	-	.	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	CDS	12999309	12999857	1	-	0	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	exon	12999309	12999857	.	-	.	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
Ledus.S2	AUGUSTUS	start_codon	12999855	12999857	.	-	0	transcript_id "Ledus.S2G174400.t1"; gene_id "Ledus.S2G174400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2337.t1 is derived from g9200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17296619	17299058	.	-	.	Ledus.S2G221900
Ledus.S2	AUGUSTUS	transcript	17296619	17299058	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	stop_codon	17296616	17296618	.	-	0	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	CDS	17296619	17296722	0.96	-	2	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	exon	17296619	17296722	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	intron	17296723	17296828	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	CDS	17296829	17297252	0.83	-	0	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	exon	17296829	17297252	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	intron	17297253	17297342	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	CDS	17297343	17297403	1	-	1	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	exon	17297343	17297403	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	intron	17297404	17297491	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	CDS	17297492	17297601	1	-	0	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	exon	17297492	17297601	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	intron	17297602	17297716	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	CDS	17297717	17297776	1	-	0	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	exon	17297717	17297776	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	intron	17297777	17297871	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	CDS	17297872	17297950	1	-	1	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	exon	17297872	17297950	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	intron	17297951	17298074	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	CDS	17298075	17298145	1	-	0	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	exon	17298075	17298145	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	intron	17298146	17298251	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	CDS	17298252	17298308	0.99	-	0	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	exon	17298252	17298308	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	intron	17298309	17298411	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	CDS	17298412	17298589	1	-	1	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	exon	17298412	17298589	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	intron	17298590	17298669	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	CDS	17298670	17298834	1	-	1	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	exon	17298670	17298834	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	intron	17298835	17298924	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	CDS	17298925	17299058	1	-	0	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	exon	17298925	17299058	.	-	.	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
Ledus.S2	AUGUSTUS	start_codon	17299056	17299058	.	-	0	transcript_id "Ledus.S2G221900.t1"; gene_id "Ledus.S2G221900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5248.t1 is derived from g2687.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22683414	22684291	.	+	.	Ledus.S1G266900
Ledus.S1	AUGUSTUS	transcript	22683414	22684291	.	+	.	transcript_id "Ledus.S1G266900.t1"; gene_id "Ledus.S1G266900"
Ledus.S1	AUGUSTUS	start_codon	22683414	22683416	.	+	0	transcript_id "Ledus.S1G266900.t1"; gene_id "Ledus.S1G266900"
Ledus.S1	AUGUSTUS	CDS	22683414	22683550	0.28	+	0	transcript_id "Ledus.S1G266900.t1"; gene_id "Ledus.S1G266900"
Ledus.S1	AUGUSTUS	exon	22683414	22683550	.	+	.	transcript_id "Ledus.S1G266900.t1"; gene_id "Ledus.S1G266900"
Ledus.S1	AUGUSTUS	intron	22683551	22683707	.	+	.	transcript_id "Ledus.S1G266900.t1"; gene_id "Ledus.S1G266900"
Ledus.S1	AUGUSTUS	CDS	22683708	22683768	0.49	+	1	transcript_id "Ledus.S1G266900.t1"; gene_id "Ledus.S1G266900"
Ledus.S1	AUGUSTUS	exon	22683708	22683768	.	+	.	transcript_id "Ledus.S1G266900.t1"; gene_id "Ledus.S1G266900"
Ledus.S1	AUGUSTUS	intron	22683769	22684069	.	+	.	transcript_id "Ledus.S1G266900.t1"; gene_id "Ledus.S1G266900"
Ledus.S1	AUGUSTUS	CDS	22684070	22684291	0.63	+	0	transcript_id "Ledus.S1G266900.t1"; gene_id "Ledus.S1G266900"
Ledus.S1	AUGUSTUS	exon	22684070	22684291	.	+	.	transcript_id "Ledus.S1G266900.t1"; gene_id "Ledus.S1G266900"
Ledus.S1	AUGUSTUS	stop_codon	22684292	22684294	.	+	0	transcript_id "Ledus.S1G266900.t1"; gene_id "Ledus.S1G266900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10872.t1 is derived from g4490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	205661	209080	.	+	.	Ledus.S4G002800
Ledus.S4	AUGUSTUS	transcript	205661	209080	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	start_codon	205661	205663	.	+	0	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	CDS	205661	205717	0.93	+	0	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	exon	205661	205717	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	intron	205718	205796	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	CDS	205797	206093	1	+	0	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	exon	205797	206093	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	intron	206094	206184	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	CDS	206185	206295	1	+	0	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	exon	206185	206295	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	intron	206296	206392	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	CDS	206393	206482	1	+	0	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	exon	206393	206482	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	intron	206483	206615	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	CDS	206616	206668	0.99	+	0	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	exon	206616	206668	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	intron	206669	206782	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	CDS	206783	206961	0.9	+	1	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	exon	206783	206961	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	intron	206962	207071	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	CDS	207072	207310	0.93	+	2	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	exon	207072	207310	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	intron	207311	207431	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	CDS	207432	207609	1	+	0	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	exon	207432	207609	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	intron	207610	207719	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	CDS	207720	207946	1	+	2	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	exon	207720	207946	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	intron	207947	208037	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	CDS	208038	208220	1	+	0	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	exon	208038	208220	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	intron	208221	208318	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	CDS	208319	208591	1	+	0	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	exon	208319	208591	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	intron	208592	208738	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	CDS	208739	209080	0.88	+	0	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	exon	208739	209080	.	+	.	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
Ledus.S4	AUGUSTUS	stop_codon	209081	209083	.	+	0	transcript_id "Ledus.S4G002800.t1"; gene_id "Ledus.S4G002800"
# This transcript jg5569.t2 is derived from g3008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5570.t1 is derived from g3009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25180859	25184218	.	+	.	Ledus.S1G299100
Ledus.S1	AUGUSTUS	transcript	25180859	25184218	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	start_codon	25180859	25180861	.	+	0	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	CDS	25180859	25181041	0.52	+	0	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	exon	25180859	25181041	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	intron	25181042	25181196	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	CDS	25181197	25181292	1	+	0	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	exon	25181197	25181292	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	intron	25181293	25181433	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	CDS	25181434	25181554	1	+	0	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	exon	25181434	25181554	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	intron	25181555	25181645	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	CDS	25181646	25181752	1	+	2	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	exon	25181646	25181752	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	intron	25181753	25181841	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	CDS	25181842	25182059	1	+	0	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	exon	25181842	25182059	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	intron	25182060	25182218	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	CDS	25182219	25182396	1	+	1	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	exon	25182219	25182396	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	intron	25182397	25182545	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	CDS	25182546	25182665	1	+	0	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	exon	25182546	25182665	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	intron	25182666	25182834	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	CDS	25182835	25182921	1	+	0	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	exon	25182835	25182921	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	intron	25182922	25183073	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	CDS	25183074	25183202	1	+	0	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	exon	25183074	25183202	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	intron	25183203	25183324	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	CDS	25183325	25184218	0.99	+	0	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	exon	25183325	25184218	.	+	.	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
Ledus.S1	AUGUSTUS	stop_codon	25184219	25184221	.	+	0	transcript_id "Ledus.S1G299100.t1"; gene_id "Ledus.S1G299100"
# This transcript jg11146.t2 is derived from g4764.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11147.t1 is derived from g4765.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2151686	2153026	.	-	.	Ledus.S4G030300
Ledus.S4	AUGUSTUS	transcript	2151686	2153026	.	-	.	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	stop_codon	2151683	2151685	.	-	0	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	CDS	2151686	2151784	0.99	-	0	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	exon	2151686	2151784	.	-	.	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	intron	2151785	2151898	.	-	.	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	CDS	2151899	2152253	1	-	1	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	exon	2151899	2152253	.	-	.	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	intron	2152254	2152348	.	-	.	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	CDS	2152349	2152417	1	-	1	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	exon	2152349	2152417	.	-	.	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	intron	2152418	2152505	.	-	.	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	CDS	2152506	2152552	1	-	0	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	exon	2152506	2152552	.	-	.	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	intron	2152553	2152630	.	-	.	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	CDS	2152631	2153026	1	-	0	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	exon	2152631	2153026	.	-	.	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	start_codon	2153024	2153026	.	-	0	transcript_id "Ledus.S4G030300.t1"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	transcript	2151686	2153026	.	-	.	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	stop_codon	2151683	2151685	.	-	0	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	CDS	2151686	2151784	0.97	-	0	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	exon	2151686	2151784	.	-	.	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	intron	2151785	2151898	.	-	.	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	CDS	2151899	2152253	1	-	1	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	exon	2151899	2152253	.	-	.	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	intron	2152254	2152348	.	-	.	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	CDS	2152349	2152527	0.86	-	0	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	exon	2152349	2152527	.	-	.	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	intron	2152528	2152630	.	-	.	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	CDS	2152631	2153026	0.99	-	0	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	exon	2152631	2153026	.	-	.	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
Ledus.S4	AUGUSTUS	start_codon	2153024	2153026	.	-	0	transcript_id "Ledus.S4G030300.t2"; gene_id "Ledus.S4G030300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5652.t1 is derived from g3091.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25581989	25585865	.	+	.	Ledus.S1G307300
Ledus.S1	AUGUSTUS	transcript	25581989	25585865	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	start_codon	25581989	25581991	.	+	0	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25581989	25582049	1	+	0	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25581989	25582049	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25582050	25582769	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25582770	25582915	1	+	2	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25582770	25582915	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25582916	25583078	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25583079	25583110	0.65	+	0	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25583079	25583110	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25583111	25583398	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25583399	25583466	0.65	+	1	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25583399	25583466	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25583467	25583637	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25583638	25583735	1	+	2	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25583638	25583735	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25583736	25583816	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25583817	25583863	1	+	0	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25583817	25583863	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25583864	25584026	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25584027	25584177	1	+	1	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25584027	25584177	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25584178	25584263	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25584264	25584327	1	+	0	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25584264	25584327	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25584328	25584452	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25584453	25584611	1	+	2	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25584453	25584611	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25584612	25584721	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25584722	25584843	1	+	2	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25584722	25584843	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25584844	25584930	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25584931	25585005	1	+	0	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25584931	25585005	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25585006	25585149	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25585150	25585203	1	+	0	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25585150	25585203	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25585204	25585310	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25585311	25585384	1	+	0	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25585311	25585384	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25585385	25585486	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25585487	25585561	1	+	1	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25585487	25585561	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25585562	25585648	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25585649	25585865	0.55	+	1	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25585649	25585865	.	+	.	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	stop_codon	25585866	25585868	.	+	0	transcript_id "Ledus.S1G307300.t1"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	transcript	25581989	25585865	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	start_codon	25581989	25581991	.	+	0	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25581989	25582049	0.99	+	0	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25581989	25582049	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25582050	25582769	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25582770	25582930	1	+	2	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25582770	25582930	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25582931	25583078	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25583079	25583110	0.64	+	0	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25583079	25583110	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25583111	25583398	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25583399	25583466	0.64	+	1	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25583399	25583466	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25583467	25583637	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25583638	25583735	1	+	2	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25583638	25583735	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25583736	25583816	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25583817	25583863	1	+	0	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25583817	25583863	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25583864	25584026	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25584027	25584177	1	+	1	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25584027	25584177	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25584178	25584263	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25584264	25584327	1	+	0	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25584264	25584327	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25584328	25584452	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25584453	25584611	1	+	2	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25584453	25584611	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25584612	25584721	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25584722	25584843	1	+	2	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25584722	25584843	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25584844	25584930	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25584931	25585005	1	+	0	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25584931	25585005	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25585006	25585149	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25585150	25585203	1	+	0	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25585150	25585203	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25585204	25585310	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25585311	25585384	1	+	0	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25585311	25585384	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25585385	25585486	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25585487	25585561	1	+	1	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25585487	25585561	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	intron	25585562	25585648	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	CDS	25585649	25585865	0.58	+	1	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	exon	25585649	25585865	.	+	.	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
Ledus.S1	AUGUSTUS	stop_codon	25585866	25585868	.	+	0	transcript_id "Ledus.S1G307300.t2"; gene_id "Ledus.S1G307300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1681.t1 is derived from g8542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11815879	11818036	.	-	.	Ledus.S2G156300
Ledus.S2	AUGUSTUS	transcript	11815879	11818036	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	stop_codon	11815876	11815878	.	-	0	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	CDS	11815879	11815933	0.99	-	1	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	exon	11815879	11815933	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	intron	11815934	11816020	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	CDS	11816021	11816082	1	-	0	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	exon	11816021	11816082	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	intron	11816083	11816225	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	CDS	11816226	11816294	1	-	0	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	exon	11816226	11816294	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	intron	11816295	11816419	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	CDS	11816420	11816467	0.97	-	0	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	exon	11816420	11816467	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	intron	11816468	11816746	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	CDS	11816747	11816859	0.99	-	2	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	exon	11816747	11816859	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	intron	11816860	11816962	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	CDS	11816963	11817035	0.99	-	0	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	exon	11816963	11817035	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	intron	11817036	11817124	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	CDS	11817125	11817169	1	-	0	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	exon	11817125	11817169	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	intron	11817170	11817408	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	CDS	11817409	11817519	1	-	0	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	exon	11817409	11817519	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	intron	11817520	11817607	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	CDS	11817608	11818036	0.99	-	0	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	exon	11817608	11818036	.	-	.	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
Ledus.S2	AUGUSTUS	start_codon	11818034	11818036	.	-	0	transcript_id "Ledus.S2G156300.t1"; gene_id "Ledus.S2G156300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6093.t1 is derived from g3536.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28882564	28884579	.	-	.	Ledus.S1G351400
Ledus.S1	AUGUSTUS	transcript	28882564	28884579	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	stop_codon	28882561	28882563	.	-	0	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28882564	28882670	0.93	-	2	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28882564	28882670	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28882671	28882768	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28882769	28882827	1	-	1	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28882769	28882827	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28882828	28882905	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28882906	28883006	1	-	0	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28882906	28883006	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28883007	28883105	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28883106	28883270	1	-	0	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28883106	28883270	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28883271	28883350	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28883351	28883588	0.98	-	1	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28883351	28883588	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28883589	28883696	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28883697	28884136	0.97	-	0	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28883697	28884136	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28884137	28884222	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28884223	28884312	1	-	0	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28884223	28884312	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28884313	28884402	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28884403	28884579	0.99	-	0	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28884403	28884579	.	-	.	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	start_codon	28884577	28884579	.	-	0	transcript_id "Ledus.S1G351400.t1"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	transcript	28882590	28884579	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	stop_codon	28882587	28882589	.	-	0	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28882590	28882670	0.78	-	0	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28882590	28882670	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28882671	28882772	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28882773	28882827	0.8	-	1	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28882773	28882827	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28882828	28882905	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28882906	28883006	1	-	0	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28882906	28883006	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28883007	28883105	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28883106	28883270	1	-	0	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28883106	28883270	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28883271	28883350	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28883351	28883588	0.99	-	1	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28883351	28883588	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28883589	28883696	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28883697	28884136	0.99	-	0	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28883697	28884136	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28884137	28884222	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28884223	28884312	1	-	0	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28884223	28884312	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	intron	28884313	28884402	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	CDS	28884403	28884579	1	-	0	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	exon	28884403	28884579	.	-	.	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
Ledus.S1	AUGUSTUS	start_codon	28884577	28884579	.	-	0	transcript_id "Ledus.S1G351400.t2"; gene_id "Ledus.S1G351400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2121.t1 is derived from g8984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14812989	14815310	.	+	.	Ledus.S2G200300
Ledus.S2	AUGUSTUS	transcript	14812989	14815310	.	+	.	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	start_codon	14812989	14812991	.	+	0	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	CDS	14812989	14813558	0.56	+	0	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	exon	14812989	14813558	.	+	.	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	intron	14813559	14813652	.	+	.	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	CDS	14813653	14813730	1	+	0	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	exon	14813653	14813730	.	+	.	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	intron	14813731	14813830	.	+	.	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	CDS	14813831	14813881	1	+	0	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	exon	14813831	14813881	.	+	.	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	intron	14813882	14813963	.	+	.	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	CDS	14813964	14814024	0.93	+	0	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	exon	14813964	14814024	.	+	.	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	intron	14814025	14814401	.	+	.	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	CDS	14814402	14814484	0.32	+	2	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	exon	14814402	14814484	.	+	.	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	intron	14814485	14814563	.	+	.	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	CDS	14814564	14815310	0.37	+	0	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	exon	14814564	14815310	.	+	.	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
Ledus.S2	AUGUSTUS	stop_codon	14815311	14815313	.	+	0	transcript_id "Ledus.S2G200300.t1"; gene_id "Ledus.S2G200300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4054.t1 is derived from g1490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14360423	14364078	.	-	.	Ledus.S1G147500
Ledus.S1	AUGUSTUS	transcript	14360423	14364078	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	stop_codon	14360420	14360422	.	-	0	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	CDS	14360423	14360974	0.99	-	0	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	exon	14360423	14360974	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	intron	14360975	14361117	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	CDS	14361118	14361223	1	-	1	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	exon	14361118	14361223	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	intron	14361224	14361444	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	CDS	14361445	14361565	1	-	2	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	exon	14361445	14361565	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	intron	14361566	14361779	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	CDS	14361780	14362074	1	-	0	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	exon	14361780	14362074	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	intron	14362075	14362274	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	CDS	14362275	14362523	0.93	-	0	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	exon	14362275	14362523	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	intron	14362524	14362634	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	CDS	14362635	14362984	0.98	-	2	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	exon	14362635	14362984	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	intron	14362985	14363264	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	CDS	14363265	14363325	0.99	-	0	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	exon	14363265	14363325	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	intron	14363326	14363446	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	CDS	14363447	14363590	0.73	-	0	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	exon	14363447	14363590	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	intron	14363591	14363728	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	CDS	14363729	14363807	0.7	-	1	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	exon	14363729	14363807	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	intron	14363808	14363959	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	CDS	14363960	14364078	0.97	-	0	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	exon	14363960	14364078	.	-	.	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
Ledus.S1	AUGUSTUS	start_codon	14364076	14364078	.	-	0	transcript_id "Ledus.S1G147500.t1"; gene_id "Ledus.S1G147500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8845.t1 is derived from g9875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2244347	2245619	.	-	.	Ledus.S3G032200
Ledus.S3	AUGUSTUS	transcript	2244347	2245619	.	-	.	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	stop_codon	2244344	2244346	.	-	0	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	CDS	2244347	2244422	1	-	1	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	exon	2244347	2244422	.	-	.	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	intron	2244423	2244502	.	-	.	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	CDS	2244503	2244616	0.98	-	1	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	exon	2244503	2244616	.	-	.	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	intron	2244617	2244733	.	-	.	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	CDS	2244734	2244783	0.99	-	0	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	exon	2244734	2244783	.	-	.	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	intron	2244784	2244887	.	-	.	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	CDS	2244888	2244960	1	-	1	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	exon	2244888	2244960	.	-	.	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	intron	2244961	2245056	.	-	.	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	CDS	2245057	2245258	1	-	2	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	exon	2245057	2245258	.	-	.	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	intron	2245259	2245345	.	-	.	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	CDS	2245346	2245619	1	-	0	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	exon	2245346	2245619	.	-	.	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
Ledus.S3	AUGUSTUS	start_codon	2245617	2245619	.	-	0	transcript_id "Ledus.S3G032200.t1"; gene_id "Ledus.S3G032200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12395.t1 is derived from g6016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11649695	11652634	.	-	.	Ledus.S4G155100
Ledus.S4	AUGUSTUS	transcript	11649695	11652634	.	-	.	transcript_id "Ledus.S4G155100.t1"; gene_id "Ledus.S4G155100"
Ledus.S4	AUGUSTUS	stop_codon	11649692	11649694	.	-	0	transcript_id "Ledus.S4G155100.t1"; gene_id "Ledus.S4G155100"
Ledus.S4	AUGUSTUS	CDS	11649695	11652634	0.96	-	0	transcript_id "Ledus.S4G155100.t1"; gene_id "Ledus.S4G155100"
Ledus.S4	AUGUSTUS	exon	11649695	11652634	.	-	.	transcript_id "Ledus.S4G155100.t1"; gene_id "Ledus.S4G155100"
Ledus.S4	AUGUSTUS	start_codon	11652632	11652634	.	-	0	transcript_id "Ledus.S4G155100.t1"; gene_id "Ledus.S4G155100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12510.t1 is derived from g6131.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12568243	12570901	.	-	.	Ledus.S4G166600
Ledus.S4	AUGUSTUS	transcript	12568243	12570901	.	-	.	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	stop_codon	12568240	12568242	.	-	0	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	CDS	12568243	12569082	0.88	-	0	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	exon	12568243	12569082	.	-	.	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	intron	12569083	12569195	.	-	.	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	CDS	12569196	12569667	0.7	-	1	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	exon	12569196	12569667	.	-	.	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	intron	12569668	12569858	.	-	.	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	CDS	12569859	12570504	0.95	-	2	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	exon	12569859	12570504	.	-	.	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	intron	12570505	12570600	.	-	.	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	CDS	12570601	12570626	0.95	-	1	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	exon	12570601	12570626	.	-	.	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	intron	12570627	12570848	.	-	.	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	CDS	12570849	12570901	0.95	-	0	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	exon	12570849	12570901	.	-	.	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	start_codon	12570899	12570901	.	-	0	transcript_id "Ledus.S4G166600.t1"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	transcript	12568243	12570827	.	-	.	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	stop_codon	12568240	12568242	.	-	0	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	CDS	12568243	12569082	0.95	-	0	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	exon	12568243	12569082	.	-	.	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	intron	12569083	12569195	.	-	.	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	CDS	12569196	12569667	0.77	-	1	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	exon	12569196	12569667	.	-	.	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	intron	12569668	12569858	.	-	.	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	CDS	12569859	12570500	1	-	1	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	exon	12569859	12570500	.	-	.	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	intron	12570501	12570600	.	-	.	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	CDS	12570601	12570827	0.29	-	0	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	exon	12570601	12570827	.	-	.	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
Ledus.S4	AUGUSTUS	start_codon	12570825	12570827	.	-	0	transcript_id "Ledus.S4G166600.t2"; gene_id "Ledus.S4G166600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12432.t1 is derived from g6053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11994963	11995322	.	+	.	Ledus.S4G158800
Ledus.S4	AUGUSTUS	transcript	11994963	11995322	.	+	.	transcript_id "Ledus.S4G158800.t1"; gene_id "Ledus.S4G158800"
Ledus.S4	AUGUSTUS	start_codon	11994963	11994965	.	+	0	transcript_id "Ledus.S4G158800.t1"; gene_id "Ledus.S4G158800"
Ledus.S4	AUGUSTUS	CDS	11994963	11995322	0.72	+	0	transcript_id "Ledus.S4G158800.t1"; gene_id "Ledus.S4G158800"
Ledus.S4	AUGUSTUS	exon	11994963	11995322	.	+	.	transcript_id "Ledus.S4G158800.t1"; gene_id "Ledus.S4G158800"
Ledus.S4	AUGUSTUS	stop_codon	11995323	11995325	.	+	0	transcript_id "Ledus.S4G158800.t1"; gene_id "Ledus.S4G158800"
# This transcript jg5981.t2 is derived from g3424.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5982.t1 is derived from g3425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28156609	28158017	.	-	.	Ledus.S1G340300
Ledus.S1	AUGUSTUS	transcript	28156609	28158017	.	-	.	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	stop_codon	28156606	28156608	.	-	0	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	CDS	28156609	28156764	1	-	0	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	exon	28156609	28156764	.	-	.	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	intron	28156765	28156868	.	-	.	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	CDS	28156869	28156979	0.92	-	0	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	exon	28156869	28156979	.	-	.	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	intron	28156980	28157055	.	-	.	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	CDS	28157056	28157161	1	-	1	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	exon	28157056	28157161	.	-	.	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	intron	28157162	28157282	.	-	.	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	CDS	28157283	28157319	1	-	2	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	exon	28157283	28157319	.	-	.	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	intron	28157320	28157410	.	-	.	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	CDS	28157411	28158017	0.8	-	0	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	exon	28157411	28158017	.	-	.	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
Ledus.S1	AUGUSTUS	start_codon	28158015	28158017	.	-	0	transcript_id "Ledus.S1G340300.t1"; gene_id "Ledus.S1G340300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9993.t1 is derived from g11023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11766448	11767908	.	-	.	Ledus.S3G147000
Ledus.S3	AUGUSTUS	transcript	11766448	11767908	.	-	.	transcript_id "Ledus.S3G147000.t1"; gene_id "Ledus.S3G147000"
Ledus.S3	AUGUSTUS	stop_codon	11766445	11766447	.	-	0	transcript_id "Ledus.S3G147000.t1"; gene_id "Ledus.S3G147000"
Ledus.S3	AUGUSTUS	CDS	11766448	11767908	1	-	0	transcript_id "Ledus.S3G147000.t1"; gene_id "Ledus.S3G147000"
Ledus.S3	AUGUSTUS	exon	11766448	11767908	.	-	.	transcript_id "Ledus.S3G147000.t1"; gene_id "Ledus.S3G147000"
Ledus.S3	AUGUSTUS	start_codon	11767906	11767908	.	-	0	transcript_id "Ledus.S3G147000.t1"; gene_id "Ledus.S3G147000"
Ledus.S3	AUGUSTUS	transcript	11766448	11766858	.	-	.	transcript_id "Ledus.S3G147000.t2"; gene_id "Ledus.S3G147000"
Ledus.S3	AUGUSTUS	stop_codon	11766445	11766447	.	-	0	transcript_id "Ledus.S3G147000.t2"; gene_id "Ledus.S3G147000"
Ledus.S3	AUGUSTUS	CDS	11766448	11766858	0.73	-	0	transcript_id "Ledus.S3G147000.t2"; gene_id "Ledus.S3G147000"
Ledus.S3	AUGUSTUS	exon	11766448	11766858	.	-	.	transcript_id "Ledus.S3G147000.t2"; gene_id "Ledus.S3G147000"
Ledus.S3	AUGUSTUS	start_codon	11766856	11766858	.	-	0	transcript_id "Ledus.S3G147000.t2"; gene_id "Ledus.S3G147000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8234.t1 is derived from g12905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10074797	10075912	.	-	.	Ledus.S5G101200
Ledus.S5	AUGUSTUS	transcript	10074797	10075912	.	-	.	transcript_id "Ledus.S5G101200.t1"; gene_id "Ledus.S5G101200"
Ledus.S5	AUGUSTUS	stop_codon	10074794	10074796	.	-	0	transcript_id "Ledus.S5G101200.t1"; gene_id "Ledus.S5G101200"
Ledus.S5	AUGUSTUS	CDS	10074797	10074873	0.98	-	2	transcript_id "Ledus.S5G101200.t1"; gene_id "Ledus.S5G101200"
Ledus.S5	AUGUSTUS	exon	10074797	10074873	.	-	.	transcript_id "Ledus.S5G101200.t1"; gene_id "Ledus.S5G101200"
Ledus.S5	AUGUSTUS	intron	10074874	10075776	.	-	.	transcript_id "Ledus.S5G101200.t1"; gene_id "Ledus.S5G101200"
Ledus.S5	AUGUSTUS	CDS	10075777	10075912	0.03	-	0	transcript_id "Ledus.S5G101200.t1"; gene_id "Ledus.S5G101200"
Ledus.S5	AUGUSTUS	exon	10075777	10075912	.	-	.	transcript_id "Ledus.S5G101200.t1"; gene_id "Ledus.S5G101200"
Ledus.S5	AUGUSTUS	start_codon	10075910	10075912	.	-	0	transcript_id "Ledus.S5G101200.t1"; gene_id "Ledus.S5G101200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7263.t1 is derived from g11934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	531133	532593	.	+	.	Ledus.S5G004100
Ledus.S5	AUGUSTUS	transcript	531133	532593	.	+	.	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	start_codon	531133	531135	.	+	0	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	CDS	531133	531543	0.7	+	0	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	exon	531133	531543	.	+	.	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	intron	531544	531623	.	+	.	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	CDS	531624	531729	1	+	0	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	exon	531624	531729	.	+	.	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	intron	531730	531803	.	+	.	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	CDS	531804	531856	1	+	2	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	exon	531804	531856	.	+	.	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	intron	531857	532066	.	+	.	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	CDS	532067	532198	1	+	0	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	exon	532067	532198	.	+	.	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	intron	532199	532342	.	+	.	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	CDS	532343	532415	0.99	+	0	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	exon	532343	532415	.	+	.	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	intron	532416	532543	.	+	.	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	CDS	532544	532593	0.98	+	2	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	exon	532544	532593	.	+	.	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
Ledus.S5	AUGUSTUS	stop_codon	532594	532596	.	+	0	transcript_id "Ledus.S5G004100.t1"; gene_id "Ledus.S5G004100"
# This transcript jg8390.t2 is derived from g13062.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8391.t1 is derived from g13063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11448283	11451895	.	+	.	Ledus.S5G116900
Ledus.S5	AUGUSTUS	transcript	11448283	11451895	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	start_codon	11448283	11448285	.	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11448283	11448297	0.6	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11448283	11448297	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11448298	11448380	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11448381	11448457	0.99	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11448381	11448457	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11448458	11448559	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11448560	11448656	0.44	+	1	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11448560	11448656	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11448657	11448757	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11448758	11448803	0.51	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11448758	11448803	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11448804	11448936	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11448937	11448995	0.94	+	2	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11448937	11448995	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11448996	11449108	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11449109	11449221	0.99	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11449109	11449221	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11449222	11449338	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11449339	11449366	1	+	1	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11449339	11449366	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11449367	11449496	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11449497	11449589	1	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11449497	11449589	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11449590	11449685	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11449686	11449773	1	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11449686	11449773	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11449774	11449934	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11449935	11449996	1	+	2	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11449935	11449996	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11449997	11450070	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11450071	11450121	0.99	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11450071	11450121	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11450122	11450360	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11450361	11450449	0.66	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11450361	11450449	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11450450	11450546	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11450547	11450682	0.57	+	1	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11450547	11450682	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11450683	11451069	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11451070	11451150	0.4	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11451070	11451150	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11451151	11451298	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11451299	11451352	1	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11451299	11451352	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11451353	11451426	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11451427	11451558	1	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11451427	11451558	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11451559	11451641	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11451642	11451707	1	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11451642	11451707	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	intron	11451708	11451793	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	CDS	11451794	11451895	1	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	exon	11451794	11451895	.	+	.	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
Ledus.S5	AUGUSTUS	stop_codon	11451896	11451898	.	+	0	transcript_id "Ledus.S5G116900.t1"; gene_id "Ledus.S5G116900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9222.t1 is derived from g10252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5473464	5474129	.	-	.	Ledus.S3G069900
Ledus.S3	AUGUSTUS	transcript	5473464	5474129	.	-	.	transcript_id "Ledus.S3G069900.t1"; gene_id "Ledus.S3G069900"
Ledus.S3	AUGUSTUS	stop_codon	5473461	5473463	.	-	0	transcript_id "Ledus.S3G069900.t1"; gene_id "Ledus.S3G069900"
Ledus.S3	AUGUSTUS	CDS	5473464	5474129	0.83	-	0	transcript_id "Ledus.S3G069900.t1"; gene_id "Ledus.S3G069900"
Ledus.S3	AUGUSTUS	exon	5473464	5474129	.	-	.	transcript_id "Ledus.S3G069900.t1"; gene_id "Ledus.S3G069900"
Ledus.S3	AUGUSTUS	start_codon	5474127	5474129	.	-	0	transcript_id "Ledus.S3G069900.t1"; gene_id "Ledus.S3G069900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6267.t1 is derived from g3710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29997849	30001558	.	-	.	Ledus.S1G368800
Ledus.S1	AUGUSTUS	transcript	29997849	30001558	.	-	.	transcript_id "Ledus.S1G368800.t1"; gene_id "Ledus.S1G368800"
Ledus.S1	AUGUSTUS	stop_codon	29997846	29997848	.	-	0	transcript_id "Ledus.S1G368800.t1"; gene_id "Ledus.S1G368800"
Ledus.S1	AUGUSTUS	CDS	29997849	29998157	0.98	-	0	transcript_id "Ledus.S1G368800.t1"; gene_id "Ledus.S1G368800"
Ledus.S1	AUGUSTUS	exon	29997849	29998157	.	-	.	transcript_id "Ledus.S1G368800.t1"; gene_id "Ledus.S1G368800"
Ledus.S1	AUGUSTUS	intron	29998158	29998288	.	-	.	transcript_id "Ledus.S1G368800.t1"; gene_id "Ledus.S1G368800"
Ledus.S1	AUGUSTUS	CDS	29998289	30001558	0.99	-	0	transcript_id "Ledus.S1G368800.t1"; gene_id "Ledus.S1G368800"
Ledus.S1	AUGUSTUS	exon	29998289	30001558	.	-	.	transcript_id "Ledus.S1G368800.t1"; gene_id "Ledus.S1G368800"
Ledus.S1	AUGUSTUS	start_codon	30001556	30001558	.	-	0	transcript_id "Ledus.S1G368800.t1"; gene_id "Ledus.S1G368800"
# This transcript jg7901.t2 is derived from g12572.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7902.t1 is derived from g12573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7735002	7737812	.	+	.	Ledus.S5G068000
Ledus.S5	AUGUSTUS	transcript	7735002	7737812	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	start_codon	7735002	7735004	.	+	0	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	CDS	7735002	7735319	0.72	+	0	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	exon	7735002	7735319	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	intron	7735320	7735402	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	CDS	7735403	7735555	1	+	0	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	exon	7735403	7735555	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	intron	7735556	7735690	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	CDS	7735691	7735799	1	+	0	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	exon	7735691	7735799	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	intron	7735800	7735885	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	CDS	7735886	7736055	0.78	+	2	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	exon	7735886	7736055	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	intron	7736056	7736255	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	CDS	7736256	7736602	0.91	+	0	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	exon	7736256	7736602	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	intron	7736603	7736689	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	CDS	7736690	7736906	1	+	1	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	exon	7736690	7736906	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	intron	7736907	7736981	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	CDS	7736982	7737228	1	+	0	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	exon	7736982	7737228	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	intron	7737229	7737312	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	CDS	7737313	7737812	1	+	2	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	exon	7737313	7737812	.	+	.	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
Ledus.S5	AUGUSTUS	stop_codon	7737813	7737815	.	+	0	transcript_id "Ledus.S5G068000.t1"; gene_id "Ledus.S5G068000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9978.t1 is derived from g11008.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11714639	11718346	.	-	.	Ledus.S3G145500
Ledus.S3	AUGUSTUS	transcript	11716647	11718346	.	-	.	transcript_id "Ledus.S3G145500.t1"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	stop_codon	11716644	11716646	.	-	0	transcript_id "Ledus.S3G145500.t1"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	CDS	11716647	11716669	0.42	-	2	transcript_id "Ledus.S3G145500.t1"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	exon	11716647	11716669	.	-	.	transcript_id "Ledus.S3G145500.t1"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	intron	11716670	11716776	.	-	.	transcript_id "Ledus.S3G145500.t1"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	CDS	11716777	11718346	0.73	-	0	transcript_id "Ledus.S3G145500.t1"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	exon	11716777	11718346	.	-	.	transcript_id "Ledus.S3G145500.t1"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	start_codon	11718344	11718346	.	-	0	transcript_id "Ledus.S3G145500.t1"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	transcript	11714639	11718346	.	-	.	transcript_id "Ledus.S3G145500.t2"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	stop_codon	11714636	11714638	.	-	0	transcript_id "Ledus.S3G145500.t2"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	CDS	11714639	11718346	0.88	-	0	transcript_id "Ledus.S3G145500.t2"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	exon	11714639	11718346	.	-	.	transcript_id "Ledus.S3G145500.t2"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	start_codon	11718344	11718346	.	-	0	transcript_id "Ledus.S3G145500.t2"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	transcript	11714639	11715694	.	-	.	transcript_id "Ledus.S3G145500.t3"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	stop_codon	11714636	11714638	.	-	0	transcript_id "Ledus.S3G145500.t3"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	CDS	11714639	11715694	0.45	-	0	transcript_id "Ledus.S3G145500.t3"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	exon	11714639	11715694	.	-	.	transcript_id "Ledus.S3G145500.t3"; gene_id "Ledus.S3G145500"
Ledus.S3	AUGUSTUS	start_codon	11715692	11715694	.	-	0	transcript_id "Ledus.S3G145500.t3"; gene_id "Ledus.S3G145500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2844.t1 is derived from g278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4138934	4140172	.	-	.	Ledus.S1G026500
Ledus.S1	AUGUSTUS	transcript	4138934	4140172	.	-	.	transcript_id "Ledus.S1G026500.t1"; gene_id "Ledus.S1G026500"
Ledus.S1	AUGUSTUS	stop_codon	4138931	4138933	.	-	0	transcript_id "Ledus.S1G026500.t1"; gene_id "Ledus.S1G026500"
Ledus.S1	AUGUSTUS	CDS	4138934	4139237	0.92	-	1	transcript_id "Ledus.S1G026500.t1"; gene_id "Ledus.S1G026500"
Ledus.S1	AUGUSTUS	exon	4138934	4139237	.	-	.	transcript_id "Ledus.S1G026500.t1"; gene_id "Ledus.S1G026500"
Ledus.S1	AUGUSTUS	intron	4139238	4139331	.	-	.	transcript_id "Ledus.S1G026500.t1"; gene_id "Ledus.S1G026500"
Ledus.S1	AUGUSTUS	CDS	4139332	4139647	1	-	2	transcript_id "Ledus.S1G026500.t1"; gene_id "Ledus.S1G026500"
Ledus.S1	AUGUSTUS	exon	4139332	4139647	.	-	.	transcript_id "Ledus.S1G026500.t1"; gene_id "Ledus.S1G026500"
Ledus.S1	AUGUSTUS	intron	4139648	4139760	.	-	.	transcript_id "Ledus.S1G026500.t1"; gene_id "Ledus.S1G026500"
Ledus.S1	AUGUSTUS	CDS	4139761	4140172	0.71	-	0	transcript_id "Ledus.S1G026500.t1"; gene_id "Ledus.S1G026500"
Ledus.S1	AUGUSTUS	exon	4139761	4140172	.	-	.	transcript_id "Ledus.S1G026500.t1"; gene_id "Ledus.S1G026500"
Ledus.S1	AUGUSTUS	start_codon	4140170	4140172	.	-	0	transcript_id "Ledus.S1G026500.t1"; gene_id "Ledus.S1G026500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3973.t1 is derived from g1409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13824138	13827128	.	-	.	Ledus.S1G139400
Ledus.S1	AUGUSTUS	transcript	13824138	13827128	.	-	.	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	stop_codon	13824135	13824137	.	-	0	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	CDS	13824138	13824139	0.87	-	2	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	exon	13824138	13824139	.	-	.	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	intron	13824140	13824734	.	-	.	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	CDS	13824735	13824867	0.59	-	0	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	exon	13824735	13824867	.	-	.	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	intron	13824868	13825052	.	-	.	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	CDS	13825053	13825112	0.59	-	0	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	exon	13825053	13825112	.	-	.	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	intron	13825113	13825287	.	-	.	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	CDS	13825288	13825393	0.84	-	1	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	exon	13825288	13825393	.	-	.	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	intron	13825394	13825504	.	-	.	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	CDS	13825505	13826712	0.83	-	0	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	exon	13825505	13826712	.	-	.	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	intron	13826713	13826828	.	-	.	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	CDS	13826829	13827128	0.76	-	0	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	exon	13826829	13827128	.	-	.	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
Ledus.S1	AUGUSTUS	start_codon	13827126	13827128	.	-	0	transcript_id "Ledus.S1G139400.t1"; gene_id "Ledus.S1G139400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8547.t1 is derived from g9577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	122957	124346	.	+	.	Ledus.S3G002400
Ledus.S3	AUGUSTUS	transcript	122957	124346	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	start_codon	122957	122959	.	+	0	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	CDS	122957	123100	0.99	+	0	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	exon	122957	123100	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	intron	123101	123174	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	CDS	123175	123240	1	+	0	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	exon	123175	123240	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	intron	123241	123339	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	CDS	123340	123477	1	+	0	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	exon	123340	123477	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	intron	123478	123564	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	CDS	123565	123642	1	+	0	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	exon	123565	123642	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	intron	123643	123739	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	CDS	123740	123790	1	+	0	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	exon	123740	123790	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	intron	123791	123873	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	CDS	123874	123908	1	+	0	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	exon	123874	123908	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	intron	123909	123992	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	CDS	123993	124101	1	+	1	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	exon	123993	124101	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	intron	124102	124193	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	CDS	124194	124346	0.71	+	0	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	exon	124194	124346	.	+	.	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
Ledus.S3	AUGUSTUS	stop_codon	124347	124349	.	+	0	transcript_id "Ledus.S3G002400.t1"; gene_id "Ledus.S3G002400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2224.t1 is derived from g9087.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16156831	16157073	.	-	.	Ledus.S2G210600
Ledus.S2	AUGUSTUS	transcript	16156831	16157073	.	-	.	transcript_id "Ledus.S2G210600.t1"; gene_id "Ledus.S2G210600"
Ledus.S2	AUGUSTUS	stop_codon	16156828	16156830	.	-	0	transcript_id "Ledus.S2G210600.t1"; gene_id "Ledus.S2G210600"
Ledus.S2	AUGUSTUS	CDS	16156831	16157073	0.25	-	0	transcript_id "Ledus.S2G210600.t1"; gene_id "Ledus.S2G210600"
Ledus.S2	AUGUSTUS	exon	16156831	16157073	.	-	.	transcript_id "Ledus.S2G210600.t1"; gene_id "Ledus.S2G210600"
Ledus.S2	AUGUSTUS	start_codon	16157071	16157073	.	-	0	transcript_id "Ledus.S2G210600.t1"; gene_id "Ledus.S2G210600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6068.t1 is derived from g3511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28809605	28811698	.	+	.	Ledus.S1G348900
Ledus.S1	AUGUSTUS	transcript	28809605	28811698	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	start_codon	28809605	28809607	.	+	0	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	CDS	28809605	28810021	0.56	+	0	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	exon	28809605	28810021	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	intron	28810022	28810177	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	CDS	28810178	28810586	0.78	+	0	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	exon	28810178	28810586	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	intron	28810587	28810692	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	CDS	28810693	28810777	1	+	2	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	exon	28810693	28810777	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	intron	28810778	28810865	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	CDS	28810866	28810916	1	+	1	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	exon	28810866	28810916	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	intron	28810917	28811006	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	CDS	28811007	28811127	1	+	1	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	exon	28811007	28811127	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	intron	28811128	28811205	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	CDS	28811206	28811352	1	+	0	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	exon	28811206	28811352	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	intron	28811353	28811443	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	CDS	28811444	28811698	1	+	0	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	exon	28811444	28811698	.	+	.	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
Ledus.S1	AUGUSTUS	stop_codon	28811699	28811701	.	+	0	transcript_id "Ledus.S1G348900.t1"; gene_id "Ledus.S1G348900"
# This transcript jg7416.t2 is derived from g12087.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7417.t1 is derived from g12088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2156728	2159090	.	+	.	Ledus.S5G019500
Ledus.S5	AUGUSTUS	transcript	2156728	2159090	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	start_codon	2156728	2156730	.	+	0	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2156728	2156784	0.56	+	0	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2156728	2156784	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2156785	2156869	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2156870	2156992	1	+	0	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2156870	2156992	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2156993	2157069	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2157070	2157117	1	+	0	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2157070	2157117	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2157118	2157205	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2157206	2157313	1	+	0	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2157206	2157313	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2157314	2157397	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2157398	2157481	1	+	0	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2157398	2157481	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2157482	2157560	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2157561	2157679	1	+	0	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2157561	2157679	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2157680	2157768	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2157769	2157870	0.99	+	1	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2157769	2157870	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2157871	2157987	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2157988	2158104	1	+	1	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2157988	2158104	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2158105	2158188	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2158189	2158254	0.96	+	1	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2158189	2158254	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2158255	2158329	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2158330	2158396	0.83	+	1	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2158330	2158396	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2158397	2158525	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2158526	2158579	0.95	+	0	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2158526	2158579	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2158580	2158687	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2158688	2158768	1	+	0	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2158688	2158768	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2158769	2158885	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2158886	2158924	0.77	+	0	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2158886	2158924	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	intron	2158925	2158997	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	CDS	2158998	2159090	1	+	0	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	exon	2158998	2159090	.	+	.	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
Ledus.S5	AUGUSTUS	stop_codon	2159091	2159093	.	+	0	transcript_id "Ledus.S5G019500.t1"; gene_id "Ledus.S5G019500"
# This transcript jg8403.t2 is derived from g13075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8404.t1 is derived from g13076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11497192	11498277	.	-	.	Ledus.S5G118200
Ledus.S5	AUGUSTUS	transcript	11497192	11498277	.	-	.	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	stop_codon	11497189	11497191	.	-	0	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	CDS	11497192	11497248	1	-	0	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	exon	11497192	11497248	.	-	.	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	intron	11497249	11497346	.	-	.	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	CDS	11497347	11497412	1	-	0	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	exon	11497347	11497412	.	-	.	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	intron	11497413	11497500	.	-	.	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	CDS	11497501	11498058	1	-	0	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	exon	11497501	11498058	.	-	.	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	intron	11498059	11498172	.	-	.	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	CDS	11498173	11498277	0.9	-	0	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	exon	11498173	11498277	.	-	.	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
Ledus.S5	AUGUSTUS	start_codon	11498275	11498277	.	-	0	transcript_id "Ledus.S5G118200.t1"; gene_id "Ledus.S5G118200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3366.t1 is derived from g801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7874171	7878400	.	-	.	Ledus.S1G078700
Ledus.S1	AUGUSTUS	transcript	7874171	7878400	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	stop_codon	7874168	7874170	.	-	0	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	CDS	7874171	7874533	0.99	-	0	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	exon	7874171	7874533	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	intron	7874534	7874625	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	CDS	7874626	7874787	1	-	0	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	exon	7874626	7874787	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	intron	7874788	7874909	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	CDS	7874910	7875122	1	-	0	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	exon	7874910	7875122	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	intron	7875123	7875244	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	CDS	7875245	7875868	1	-	0	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	exon	7875245	7875868	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	intron	7875869	7876011	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	CDS	7876012	7876578	1	-	0	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	exon	7876012	7876578	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	intron	7876579	7876723	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	CDS	7876724	7876794	1	-	2	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	exon	7876724	7876794	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	intron	7876795	7876940	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	CDS	7876941	7877109	1	-	0	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	exon	7876941	7877109	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	intron	7877110	7877280	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	CDS	7877281	7877345	1	-	2	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	exon	7877281	7877345	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	intron	7877346	7878372	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	CDS	7878373	7878400	0.95	-	0	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	exon	7878373	7878400	.	-	.	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
Ledus.S1	AUGUSTUS	start_codon	7878398	7878400	.	-	0	transcript_id "Ledus.S1G078700.t1"; gene_id "Ledus.S1G078700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3849.t1 is derived from g1285.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13160542	13164185	.	-	.	Ledus.S1G127000
Ledus.S1	AUGUSTUS	transcript	13160542	13164185	.	-	.	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	stop_codon	13160539	13160541	.	-	0	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	CDS	13160542	13160684	0.5	-	2	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	exon	13160542	13160684	.	-	.	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	intron	13160685	13160845	.	-	.	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	CDS	13160846	13163098	0.54	-	2	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	exon	13160846	13163098	.	-	.	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	intron	13163099	13163266	.	-	.	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	CDS	13163267	13163457	0.55	-	1	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	exon	13163267	13163457	.	-	.	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	intron	13163458	13163576	.	-	.	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	CDS	13163577	13163741	0.97	-	1	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	exon	13163577	13163741	.	-	.	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	intron	13163742	13163867	.	-	.	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	CDS	13163868	13163929	0.94	-	0	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	exon	13163868	13163929	.	-	.	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	intron	13163930	13164104	.	-	.	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	CDS	13164105	13164185	0.93	-	0	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	exon	13164105	13164185	.	-	.	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	start_codon	13164183	13164185	.	-	0	transcript_id "Ledus.S1G127000.t1"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	transcript	13160542	13164150	.	-	.	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	stop_codon	13160539	13160541	.	-	0	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	CDS	13160542	13160684	0.44	-	2	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	exon	13160542	13160684	.	-	.	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	intron	13160685	13160845	.	-	.	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	CDS	13160846	13163098	0.47	-	2	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	exon	13160846	13163098	.	-	.	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	intron	13163099	13163266	.	-	.	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	CDS	13163267	13163457	0.5	-	1	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	exon	13163267	13163457	.	-	.	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	intron	13163458	13163576	.	-	.	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	CDS	13163577	13163741	0.94	-	1	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	exon	13163577	13163741	.	-	.	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	intron	13163742	13163892	.	-	.	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	CDS	13163893	13163929	0.48	-	2	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	exon	13163893	13163929	.	-	.	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	intron	13163930	13164038	.	-	.	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	CDS	13164039	13164150	0.59	-	0	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	exon	13164039	13164150	.	-	.	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
Ledus.S1	AUGUSTUS	start_codon	13164148	13164150	.	-	0	transcript_id "Ledus.S1G127000.t2"; gene_id "Ledus.S1G127000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2290.t1 is derived from g9153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17037066	17038490	.	+	.	Ledus.S2G217200
Ledus.S2	AUGUSTUS	transcript	17037066	17038490	.	+	.	transcript_id "Ledus.S2G217200.t1"; gene_id "Ledus.S2G217200"
Ledus.S2	AUGUSTUS	start_codon	17037066	17037068	.	+	0	transcript_id "Ledus.S2G217200.t1"; gene_id "Ledus.S2G217200"
Ledus.S2	AUGUSTUS	CDS	17037066	17037642	0.56	+	0	transcript_id "Ledus.S2G217200.t1"; gene_id "Ledus.S2G217200"
Ledus.S2	AUGUSTUS	exon	17037066	17037642	.	+	.	transcript_id "Ledus.S2G217200.t1"; gene_id "Ledus.S2G217200"
Ledus.S2	AUGUSTUS	intron	17037643	17037729	.	+	.	transcript_id "Ledus.S2G217200.t1"; gene_id "Ledus.S2G217200"
Ledus.S2	AUGUSTUS	CDS	17037730	17038294	0.99	+	2	transcript_id "Ledus.S2G217200.t1"; gene_id "Ledus.S2G217200"
Ledus.S2	AUGUSTUS	exon	17037730	17038294	.	+	.	transcript_id "Ledus.S2G217200.t1"; gene_id "Ledus.S2G217200"
Ledus.S2	AUGUSTUS	intron	17038295	17038414	.	+	.	transcript_id "Ledus.S2G217200.t1"; gene_id "Ledus.S2G217200"
Ledus.S2	AUGUSTUS	CDS	17038415	17038490	1	+	1	transcript_id "Ledus.S2G217200.t1"; gene_id "Ledus.S2G217200"
Ledus.S2	AUGUSTUS	exon	17038415	17038490	.	+	.	transcript_id "Ledus.S2G217200.t1"; gene_id "Ledus.S2G217200"
Ledus.S2	AUGUSTUS	stop_codon	17038491	17038493	.	+	0	transcript_id "Ledus.S2G217200.t1"; gene_id "Ledus.S2G217200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12584.t1 is derived from g6206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13000804	13001595	.	-	.	Ledus.S4G174000
Ledus.S4	AUGUSTUS	transcript	13000804	13001595	.	-	.	transcript_id "Ledus.S4G174000.t1"; gene_id "Ledus.S4G174000"
Ledus.S4	AUGUSTUS	stop_codon	13000801	13000803	.	-	0	transcript_id "Ledus.S4G174000.t1"; gene_id "Ledus.S4G174000"
Ledus.S4	AUGUSTUS	CDS	13000804	13001028	0.94	-	0	transcript_id "Ledus.S4G174000.t1"; gene_id "Ledus.S4G174000"
Ledus.S4	AUGUSTUS	exon	13000804	13001028	.	-	.	transcript_id "Ledus.S4G174000.t1"; gene_id "Ledus.S4G174000"
Ledus.S4	AUGUSTUS	intron	13001029	13001235	.	-	.	transcript_id "Ledus.S4G174000.t1"; gene_id "Ledus.S4G174000"
Ledus.S4	AUGUSTUS	CDS	13001236	13001503	1	-	1	transcript_id "Ledus.S4G174000.t1"; gene_id "Ledus.S4G174000"
Ledus.S4	AUGUSTUS	exon	13001236	13001503	.	-	.	transcript_id "Ledus.S4G174000.t1"; gene_id "Ledus.S4G174000"
Ledus.S4	AUGUSTUS	intron	13001504	13001578	.	-	.	transcript_id "Ledus.S4G174000.t1"; gene_id "Ledus.S4G174000"
Ledus.S4	AUGUSTUS	CDS	13001579	13001595	1	-	0	transcript_id "Ledus.S4G174000.t1"; gene_id "Ledus.S4G174000"
Ledus.S4	AUGUSTUS	exon	13001579	13001595	.	-	.	transcript_id "Ledus.S4G174000.t1"; gene_id "Ledus.S4G174000"
Ledus.S4	AUGUSTUS	start_codon	13001593	13001595	.	-	0	transcript_id "Ledus.S4G174000.t1"; gene_id "Ledus.S4G174000"
# This transcript jg11827.t2 is derived from g5446.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11828.t1 is derived from g5447.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7114716	7115900	.	-	.	Ledus.S4G098400
Ledus.S4	AUGUSTUS	transcript	7114792	7115900	.	-	.	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	stop_codon	7114789	7114791	.	-	0	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	CDS	7114792	7114919	1	-	2	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	exon	7114792	7114919	.	-	.	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	intron	7114920	7115008	.	-	.	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	CDS	7115009	7115100	1	-	1	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	exon	7115009	7115100	.	-	.	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	intron	7115101	7115195	.	-	.	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	CDS	7115196	7115329	1	-	0	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	exon	7115196	7115329	.	-	.	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	intron	7115330	7115429	.	-	.	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	CDS	7115430	7115480	1	-	0	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	exon	7115430	7115480	.	-	.	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	intron	7115481	7115564	.	-	.	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	CDS	7115565	7115900	0.96	-	0	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	exon	7115565	7115900	.	-	.	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	start_codon	7115898	7115900	.	-	0	transcript_id "Ledus.S4G098400.t1"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	transcript	7114716	7115900	.	-	.	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	stop_codon	7114713	7114715	.	-	0	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	CDS	7114716	7114930	0.98	-	2	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	exon	7114716	7114930	.	-	.	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	intron	7114931	7115008	.	-	.	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	CDS	7115009	7115100	1	-	1	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	exon	7115009	7115100	.	-	.	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	intron	7115101	7115195	.	-	.	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	CDS	7115196	7115329	1	-	0	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	exon	7115196	7115329	.	-	.	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	intron	7115330	7115429	.	-	.	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	CDS	7115430	7115480	1	-	0	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	exon	7115430	7115480	.	-	.	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	intron	7115481	7115564	.	-	.	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	CDS	7115565	7115900	0.95	-	0	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	exon	7115565	7115900	.	-	.	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
Ledus.S4	AUGUSTUS	start_codon	7115898	7115900	.	-	0	transcript_id "Ledus.S4G098400.t2"; gene_id "Ledus.S4G098400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10790.t1 is derived from g11822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17764729	17766953	.	+	.	Ledus.S3G226700
Ledus.S3	AUGUSTUS	transcript	17764729	17766953	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	start_codon	17764729	17764731	.	+	0	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17764729	17764823	0.76	+	0	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17764729	17764823	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17764824	17764942	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17764943	17765165	0.99	+	1	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17764943	17765165	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17765166	17765326	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17765327	17765466	1	+	0	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17765327	17765466	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17765467	17765578	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17765579	17765708	1	+	1	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17765579	17765708	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17765709	17765800	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17765801	17765899	1	+	0	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17765801	17765899	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17765900	17765977	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17765978	17766132	1	+	0	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17765978	17766132	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17766133	17766313	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17766314	17766430	0.99	+	1	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17766314	17766430	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17766431	17766585	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17766586	17766642	0.95	+	1	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17766586	17766642	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17766643	17766736	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17766737	17766953	0.91	+	1	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17766737	17766953	.	+	.	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	stop_codon	17766954	17766956	.	+	0	transcript_id "Ledus.S3G226700.t1"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	transcript	17764729	17766780	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	start_codon	17764729	17764731	.	+	0	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17764729	17764823	0.75	+	0	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17764729	17764823	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17764824	17764942	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17764943	17765165	1	+	1	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17764943	17765165	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17765166	17765326	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17765327	17765466	1	+	0	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17765327	17765466	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17765467	17765578	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17765579	17765708	1	+	1	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17765579	17765708	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17765709	17765800	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17765801	17765899	1	+	0	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17765801	17765899	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17765900	17765977	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17765978	17766132	1	+	0	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17765978	17766132	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17766133	17766313	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17766314	17766430	0.79	+	1	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17766314	17766430	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17766431	17766544	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17766545	17766642	0.95	+	1	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17766545	17766642	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	intron	17766643	17766736	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	CDS	17766737	17766780	0.97	+	2	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	exon	17766737	17766780	.	+	.	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
Ledus.S3	AUGUSTUS	stop_codon	17766781	17766783	.	+	0	transcript_id "Ledus.S3G226700.t2"; gene_id "Ledus.S3G226700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11150.t1 is derived from g4768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2163831	2164318	.	-	.	Ledus.S4G030600
Ledus.S4	AUGUSTUS	transcript	2163831	2164318	.	-	.	transcript_id "Ledus.S4G030600.t1"; gene_id "Ledus.S4G030600"
Ledus.S4	AUGUSTUS	stop_codon	2163828	2163830	.	-	0	transcript_id "Ledus.S4G030600.t1"; gene_id "Ledus.S4G030600"
Ledus.S4	AUGUSTUS	CDS	2163831	2163895	0.64	-	2	transcript_id "Ledus.S4G030600.t1"; gene_id "Ledus.S4G030600"
Ledus.S4	AUGUSTUS	exon	2163831	2163895	.	-	.	transcript_id "Ledus.S4G030600.t1"; gene_id "Ledus.S4G030600"
Ledus.S4	AUGUSTUS	intron	2163896	2164014	.	-	.	transcript_id "Ledus.S4G030600.t1"; gene_id "Ledus.S4G030600"
Ledus.S4	AUGUSTUS	CDS	2164015	2164318	0.77	-	0	transcript_id "Ledus.S4G030600.t1"; gene_id "Ledus.S4G030600"
Ledus.S4	AUGUSTUS	exon	2164015	2164318	.	-	.	transcript_id "Ledus.S4G030600.t1"; gene_id "Ledus.S4G030600"
Ledus.S4	AUGUSTUS	start_codon	2164316	2164318	.	-	0	transcript_id "Ledus.S4G030600.t1"; gene_id "Ledus.S4G030600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7031.t1 is derived from g6562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	939032	939949	.	-	.	Ledus.C7G009200
Ledus.C7	AUGUSTUS	transcript	939032	939949	.	-	.	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	stop_codon	939029	939031	.	-	0	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	CDS	939032	939077	0.6	-	1	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	exon	939032	939077	.	-	.	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	intron	939078	939239	.	-	.	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	CDS	939240	939351	0.6	-	2	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	exon	939240	939351	.	-	.	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	intron	939352	939502	.	-	.	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	CDS	939503	939583	0.69	-	2	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	exon	939503	939583	.	-	.	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	intron	939584	939705	.	-	.	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	CDS	939706	939949	0.58	-	0	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	exon	939706	939949	.	-	.	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
Ledus.C7	AUGUSTUS	start_codon	939947	939949	.	-	0	transcript_id "Ledus.C7G009200.t1"; gene_id "Ledus.C7G009200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2420.t1 is derived from g9283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18033358	18033708	.	-	.	Ledus.S2G230200
Ledus.S2	AUGUSTUS	transcript	18033358	18033708	.	-	.	transcript_id "Ledus.S2G230200.t1"; gene_id "Ledus.S2G230200"
Ledus.S2	AUGUSTUS	stop_codon	18033355	18033357	.	-	0	transcript_id "Ledus.S2G230200.t1"; gene_id "Ledus.S2G230200"
Ledus.S2	AUGUSTUS	CDS	18033358	18033708	0.63	-	0	transcript_id "Ledus.S2G230200.t1"; gene_id "Ledus.S2G230200"
Ledus.S2	AUGUSTUS	exon	18033358	18033708	.	-	.	transcript_id "Ledus.S2G230200.t1"; gene_id "Ledus.S2G230200"
Ledus.S2	AUGUSTUS	start_codon	18033706	18033708	.	-	0	transcript_id "Ledus.S2G230200.t1"; gene_id "Ledus.S2G230200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12857.t1 is derived from g11891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	340893	341129	.	+	.	Ledus.C11G002100
Ledus.C11	AUGUSTUS	transcript	340893	341129	.	+	.	transcript_id "Ledus.C11G002100.t1"; gene_id "Ledus.C11G002100"
Ledus.C11	AUGUSTUS	start_codon	340893	340895	.	+	0	transcript_id "Ledus.C11G002100.t1"; gene_id "Ledus.C11G002100"
Ledus.C11	AUGUSTUS	CDS	340893	341129	0.69	+	0	transcript_id "Ledus.C11G002100.t1"; gene_id "Ledus.C11G002100"
Ledus.C11	AUGUSTUS	exon	340893	341129	.	+	.	transcript_id "Ledus.C11G002100.t1"; gene_id "Ledus.C11G002100"
Ledus.C11	AUGUSTUS	stop_codon	341130	341132	.	+	0	transcript_id "Ledus.C11G002100.t1"; gene_id "Ledus.C11G002100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7573.t1 is derived from g12244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4098010	4099975	.	-	.	Ledus.S5G035100
Ledus.S5	AUGUSTUS	transcript	4098010	4099975	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	stop_codon	4098007	4098009	.	-	0	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	CDS	4098010	4098311	1	-	2	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	exon	4098010	4098311	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	intron	4098312	4098411	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	CDS	4098412	4098610	1	-	0	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	exon	4098412	4098610	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	intron	4098611	4098714	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	CDS	4098715	4098857	1	-	2	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	exon	4098715	4098857	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	intron	4098858	4098986	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	CDS	4098987	4099120	1	-	1	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	exon	4098987	4099120	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	intron	4099121	4099234	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	CDS	4099235	4099373	1	-	2	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	exon	4099235	4099373	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	intron	4099374	4099488	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	CDS	4099489	4099660	1	-	0	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	exon	4099489	4099660	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	intron	4099661	4099822	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	CDS	4099823	4099975	0.97	-	0	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	exon	4099823	4099975	.	-	.	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
Ledus.S5	AUGUSTUS	start_codon	4099973	4099975	.	-	0	transcript_id "Ledus.S5G035100.t1"; gene_id "Ledus.S5G035100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9557.t1 is derived from g10587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7766612	7768420	.	+	.	Ledus.S3G103400
Ledus.S3	AUGUSTUS	transcript	7766612	7768420	.	+	.	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	start_codon	7766612	7766614	.	+	0	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	CDS	7766612	7767323	1	+	0	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	exon	7766612	7767323	.	+	.	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	intron	7767324	7767409	.	+	.	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	CDS	7767410	7767516	1	+	2	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	exon	7767410	7767516	.	+	.	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	intron	7767517	7767609	.	+	.	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	CDS	7767610	7767729	0.66	+	0	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	exon	7767610	7767729	.	+	.	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	intron	7767730	7768086	.	+	.	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	CDS	7768087	7768175	0.9	+	0	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	exon	7768087	7768175	.	+	.	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	intron	7768176	7768266	.	+	.	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	CDS	7768267	7768420	0.91	+	1	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	exon	7768267	7768420	.	+	.	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
Ledus.S3	AUGUSTUS	stop_codon	7768421	7768423	.	+	0	transcript_id "Ledus.S3G103400.t1"; gene_id "Ledus.S3G103400"
# This transcript jg3240.t2 is derived from g675.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3241.t1 is derived from g676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7068134	7070975	.	+	.	Ledus.S1G066200
Ledus.S1	AUGUSTUS	transcript	7068134	7070975	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	start_codon	7068134	7068136	.	+	0	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	CDS	7068134	7068433	0.59	+	0	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	exon	7068134	7068433	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	intron	7068434	7068549	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	CDS	7068550	7068627	1	+	0	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	exon	7068550	7068627	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	intron	7068628	7068734	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	CDS	7068735	7068854	0.68	+	0	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	exon	7068735	7068854	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	intron	7068855	7068999	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	CDS	7069000	7069094	1	+	0	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	exon	7069000	7069094	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	intron	7069095	7069226	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	CDS	7069227	7069347	1	+	1	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	exon	7069227	7069347	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	intron	7069348	7069479	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	CDS	7069480	7069559	1	+	0	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	exon	7069480	7069559	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	intron	7069560	7069706	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	CDS	7069707	7069769	1	+	1	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	exon	7069707	7069769	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	intron	7069770	7070012	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	CDS	7070013	7070128	1	+	1	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	exon	7070013	7070128	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	intron	7070129	7070309	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	CDS	7070310	7070395	0.97	+	2	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	exon	7070310	7070395	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	intron	7070396	7070496	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	CDS	7070497	7070618	0.96	+	0	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	exon	7070497	7070618	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	intron	7070619	7070794	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	CDS	7070795	7070975	1	+	1	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	exon	7070795	7070975	.	+	.	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
Ledus.S1	AUGUSTUS	stop_codon	7070976	7070978	.	+	0	transcript_id "Ledus.S1G066200.t1"; gene_id "Ledus.S1G066200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3726.t1 is derived from g1162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11200857	11201456	.	+	.	Ledus.S1G114700
Ledus.S1	AUGUSTUS	transcript	11200857	11201456	.	+	.	transcript_id "Ledus.S1G114700.t1"; gene_id "Ledus.S1G114700"
Ledus.S1	AUGUSTUS	start_codon	11200857	11200859	.	+	0	transcript_id "Ledus.S1G114700.t1"; gene_id "Ledus.S1G114700"
Ledus.S1	AUGUSTUS	CDS	11200857	11200989	0.57	+	0	transcript_id "Ledus.S1G114700.t1"; gene_id "Ledus.S1G114700"
Ledus.S1	AUGUSTUS	exon	11200857	11200989	.	+	.	transcript_id "Ledus.S1G114700.t1"; gene_id "Ledus.S1G114700"
Ledus.S1	AUGUSTUS	intron	11200990	11201102	.	+	.	transcript_id "Ledus.S1G114700.t1"; gene_id "Ledus.S1G114700"
Ledus.S1	AUGUSTUS	CDS	11201103	11201196	0.59	+	2	transcript_id "Ledus.S1G114700.t1"; gene_id "Ledus.S1G114700"
Ledus.S1	AUGUSTUS	exon	11201103	11201196	.	+	.	transcript_id "Ledus.S1G114700.t1"; gene_id "Ledus.S1G114700"
Ledus.S1	AUGUSTUS	intron	11201197	11201302	.	+	.	transcript_id "Ledus.S1G114700.t1"; gene_id "Ledus.S1G114700"
Ledus.S1	AUGUSTUS	CDS	11201303	11201456	0.59	+	1	transcript_id "Ledus.S1G114700.t1"; gene_id "Ledus.S1G114700"
Ledus.S1	AUGUSTUS	exon	11201303	11201456	.	+	.	transcript_id "Ledus.S1G114700.t1"; gene_id "Ledus.S1G114700"
Ledus.S1	AUGUSTUS	stop_codon	11201457	11201459	.	+	0	transcript_id "Ledus.S1G114700.t1"; gene_id "Ledus.S1G114700"
# This transcript jg11189.t2 is derived from g4807.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11190.t1 is derived from g4808.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2537511	2539424	.	+	.	Ledus.S4G034600
Ledus.S4	AUGUSTUS	transcript	2537511	2538595	.	+	.	transcript_id "Ledus.S4G034600.t1"; gene_id "Ledus.S4G034600"
Ledus.S4	AUGUSTUS	start_codon	2537511	2537513	.	+	0	transcript_id "Ledus.S4G034600.t1"; gene_id "Ledus.S4G034600"
Ledus.S4	AUGUSTUS	CDS	2537511	2538478	0.81	+	0	transcript_id "Ledus.S4G034600.t1"; gene_id "Ledus.S4G034600"
Ledus.S4	AUGUSTUS	exon	2537511	2538478	.	+	.	transcript_id "Ledus.S4G034600.t1"; gene_id "Ledus.S4G034600"
Ledus.S4	AUGUSTUS	intron	2538479	2538540	.	+	.	transcript_id "Ledus.S4G034600.t1"; gene_id "Ledus.S4G034600"
Ledus.S4	AUGUSTUS	CDS	2538541	2538595	0.64	+	1	transcript_id "Ledus.S4G034600.t1"; gene_id "Ledus.S4G034600"
Ledus.S4	AUGUSTUS	exon	2538541	2538595	.	+	.	transcript_id "Ledus.S4G034600.t1"; gene_id "Ledus.S4G034600"
Ledus.S4	AUGUSTUS	stop_codon	2538596	2538598	.	+	0	transcript_id "Ledus.S4G034600.t1"; gene_id "Ledus.S4G034600"
Ledus.S4	AUGUSTUS	transcript	2537511	2539424	.	+	.	transcript_id "Ledus.S4G034600.t2"; gene_id "Ledus.S4G034600"
Ledus.S4	AUGUSTUS	start_codon	2537511	2537513	.	+	0	transcript_id "Ledus.S4G034600.t2"; gene_id "Ledus.S4G034600"
Ledus.S4	AUGUSTUS	CDS	2537511	2539424	0.92	+	0	transcript_id "Ledus.S4G034600.t2"; gene_id "Ledus.S4G034600"
Ledus.S4	AUGUSTUS	exon	2537511	2539424	.	+	.	transcript_id "Ledus.S4G034600.t2"; gene_id "Ledus.S4G034600"
Ledus.S4	AUGUSTUS	stop_codon	2539425	2539427	.	+	0	transcript_id "Ledus.S4G034600.t2"; gene_id "Ledus.S4G034600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9498.t1 is derived from g10528.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7444925	7445230	.	-	.	Ledus.S3G097500
Ledus.S3	AUGUSTUS	transcript	7444925	7445230	.	-	.	transcript_id "Ledus.S3G097500.t1"; gene_id "Ledus.S3G097500"
Ledus.S3	AUGUSTUS	stop_codon	7444922	7444924	.	-	0	transcript_id "Ledus.S3G097500.t1"; gene_id "Ledus.S3G097500"
Ledus.S3	AUGUSTUS	CDS	7444925	7445230	0.93	-	0	transcript_id "Ledus.S3G097500.t1"; gene_id "Ledus.S3G097500"
Ledus.S3	AUGUSTUS	exon	7444925	7445230	.	-	.	transcript_id "Ledus.S3G097500.t1"; gene_id "Ledus.S3G097500"
Ledus.S3	AUGUSTUS	start_codon	7445228	7445230	.	-	0	transcript_id "Ledus.S3G097500.t1"; gene_id "Ledus.S3G097500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11489.t1 is derived from g5107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4888188	4891661	.	+	.	Ledus.S4G064500
Ledus.S4	AUGUSTUS	transcript	4888188	4891661	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	start_codon	4888188	4888190	.	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4888188	4888313	0.73	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4888188	4888313	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4888314	4888502	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4888503	4888592	1	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4888503	4888592	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4888593	4888707	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4888708	4888764	1	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4888708	4888764	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4888765	4888858	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4888859	4888918	1	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4888859	4888918	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4888919	4889015	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4889016	4889105	1	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4889016	4889105	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4889106	4889275	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4889276	4889422	1	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4889276	4889422	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4889423	4889504	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4889505	4889669	1	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4889505	4889669	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4889670	4889749	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4889750	4889890	1	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4889750	4889890	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4889891	4889975	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4889976	4890155	1	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4889976	4890155	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4890156	4890256	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4890257	4890452	1	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4890257	4890452	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4890453	4890546	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4890547	4890674	1	+	2	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4890547	4890674	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4890675	4890803	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4890804	4890875	1	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4890804	4890875	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4890876	4890986	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4890987	4891114	1	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4890987	4891114	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4891115	4891217	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4891218	4891365	1	+	1	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4891218	4891365	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4891366	4891448	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4891449	4891518	1	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4891449	4891518	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	intron	4891519	4891599	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	CDS	4891600	4891661	1	+	2	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	exon	4891600	4891661	.	+	.	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
Ledus.S4	AUGUSTUS	stop_codon	4891662	4891664	.	+	0	transcript_id "Ledus.S4G064500.t1"; gene_id "Ledus.S4G064500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6044.t1 is derived from g3487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28661013	28662597	.	+	.	Ledus.S1G346500
Ledus.S1	AUGUSTUS	transcript	28661013	28662597	.	+	.	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	start_codon	28661013	28661015	.	+	0	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	CDS	28661013	28661367	0.94	+	0	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	exon	28661013	28661367	.	+	.	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	intron	28661368	28661509	.	+	.	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	CDS	28661510	28661916	0.65	+	2	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	exon	28661510	28661916	.	+	.	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	intron	28661917	28662037	.	+	.	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	CDS	28662038	28662367	0.99	+	0	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	exon	28662038	28662367	.	+	.	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	intron	28662368	28662492	.	+	.	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	CDS	28662493	28662597	1	+	0	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	exon	28662493	28662597	.	+	.	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
Ledus.S1	AUGUSTUS	stop_codon	28662598	28662600	.	+	0	transcript_id "Ledus.S1G346500.t1"; gene_id "Ledus.S1G346500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7282.t1 is derived from g11953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	734491	735804	.	+	.	Ledus.S5G006000
Ledus.S5	AUGUSTUS	transcript	734491	735804	.	+	.	transcript_id "Ledus.S5G006000.t1"; gene_id "Ledus.S5G006000"
Ledus.S5	AUGUSTUS	start_codon	734491	734493	.	+	0	transcript_id "Ledus.S5G006000.t1"; gene_id "Ledus.S5G006000"
Ledus.S5	AUGUSTUS	CDS	734491	735804	0.78	+	0	transcript_id "Ledus.S5G006000.t1"; gene_id "Ledus.S5G006000"
Ledus.S5	AUGUSTUS	exon	734491	735804	.	+	.	transcript_id "Ledus.S5G006000.t1"; gene_id "Ledus.S5G006000"
Ledus.S5	AUGUSTUS	stop_codon	735805	735807	.	+	0	transcript_id "Ledus.S5G006000.t1"; gene_id "Ledus.S5G006000"
# This transcript jg2403.t2 is derived from g9266.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2404.t1 is derived from g9267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17901532	17902194	.	+	.	Ledus.S2G228600
Ledus.S2	AUGUSTUS	transcript	17901532	17902194	.	+	.	transcript_id "Ledus.S2G228600.t1"; gene_id "Ledus.S2G228600"
Ledus.S2	AUGUSTUS	start_codon	17901532	17901534	.	+	0	transcript_id "Ledus.S2G228600.t1"; gene_id "Ledus.S2G228600"
Ledus.S2	AUGUSTUS	CDS	17901532	17902194	0.78	+	0	transcript_id "Ledus.S2G228600.t1"; gene_id "Ledus.S2G228600"
Ledus.S2	AUGUSTUS	exon	17901532	17902194	.	+	.	transcript_id "Ledus.S2G228600.t1"; gene_id "Ledus.S2G228600"
Ledus.S2	AUGUSTUS	stop_codon	17902195	17902197	.	+	0	transcript_id "Ledus.S2G228600.t1"; gene_id "Ledus.S2G228600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9249.t1 is derived from g10279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5611108	5613415	.	-	.	Ledus.S3G072600
Ledus.S3	AUGUSTUS	transcript	5611108	5613415	.	-	.	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	stop_codon	5611105	5611107	.	-	0	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	CDS	5611108	5611170	0.54	-	0	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	exon	5611108	5611170	.	-	.	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	intron	5611171	5611275	.	-	.	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	CDS	5611276	5611753	0.56	-	1	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	exon	5611276	5611753	.	-	.	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	intron	5611754	5611849	.	-	.	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	CDS	5611850	5611989	1	-	0	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	exon	5611850	5611989	.	-	.	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	intron	5611990	5612161	.	-	.	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	CDS	5612162	5613415	0.99	-	0	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	exon	5612162	5613415	.	-	.	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
Ledus.S3	AUGUSTUS	start_codon	5613413	5613415	.	-	0	transcript_id "Ledus.S3G072600.t1"; gene_id "Ledus.S3G072600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11555.t1 is derived from g5173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5260620	5261148	.	+	.	Ledus.S4G071100
Ledus.S4	AUGUSTUS	transcript	5260620	5261148	.	+	.	transcript_id "Ledus.S4G071100.t1"; gene_id "Ledus.S4G071100"
Ledus.S4	AUGUSTUS	start_codon	5260620	5260622	.	+	0	transcript_id "Ledus.S4G071100.t1"; gene_id "Ledus.S4G071100"
Ledus.S4	AUGUSTUS	CDS	5260620	5260695	1	+	0	transcript_id "Ledus.S4G071100.t1"; gene_id "Ledus.S4G071100"
Ledus.S4	AUGUSTUS	exon	5260620	5260695	.	+	.	transcript_id "Ledus.S4G071100.t1"; gene_id "Ledus.S4G071100"
Ledus.S4	AUGUSTUS	intron	5260696	5260843	.	+	.	transcript_id "Ledus.S4G071100.t1"; gene_id "Ledus.S4G071100"
Ledus.S4	AUGUSTUS	CDS	5260844	5260908	1	+	2	transcript_id "Ledus.S4G071100.t1"; gene_id "Ledus.S4G071100"
Ledus.S4	AUGUSTUS	exon	5260844	5260908	.	+	.	transcript_id "Ledus.S4G071100.t1"; gene_id "Ledus.S4G071100"
Ledus.S4	AUGUSTUS	intron	5260909	5261001	.	+	.	transcript_id "Ledus.S4G071100.t1"; gene_id "Ledus.S4G071100"
Ledus.S4	AUGUSTUS	CDS	5261002	5261148	0.47	+	0	transcript_id "Ledus.S4G071100.t1"; gene_id "Ledus.S4G071100"
Ledus.S4	AUGUSTUS	exon	5261002	5261148	.	+	.	transcript_id "Ledus.S4G071100.t1"; gene_id "Ledus.S4G071100"
Ledus.S4	AUGUSTUS	stop_codon	5261149	5261151	.	+	0	transcript_id "Ledus.S4G071100.t1"; gene_id "Ledus.S4G071100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9580.t1 is derived from g10610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7937270	7937820	.	+	.	Ledus.S3G105700
Ledus.S3	AUGUSTUS	transcript	7937270	7937820	.	+	.	transcript_id "Ledus.S3G105700.t1"; gene_id "Ledus.S3G105700"
Ledus.S3	AUGUSTUS	start_codon	7937270	7937272	.	+	0	transcript_id "Ledus.S3G105700.t1"; gene_id "Ledus.S3G105700"
Ledus.S3	AUGUSTUS	CDS	7937270	7937496	0.53	+	0	transcript_id "Ledus.S3G105700.t1"; gene_id "Ledus.S3G105700"
Ledus.S3	AUGUSTUS	exon	7937270	7937496	.	+	.	transcript_id "Ledus.S3G105700.t1"; gene_id "Ledus.S3G105700"
Ledus.S3	AUGUSTUS	intron	7937497	7937717	.	+	.	transcript_id "Ledus.S3G105700.t1"; gene_id "Ledus.S3G105700"
Ledus.S3	AUGUSTUS	CDS	7937718	7937820	0.57	+	1	transcript_id "Ledus.S3G105700.t1"; gene_id "Ledus.S3G105700"
Ledus.S3	AUGUSTUS	exon	7937718	7937820	.	+	.	transcript_id "Ledus.S3G105700.t1"; gene_id "Ledus.S3G105700"
Ledus.S3	AUGUSTUS	stop_codon	7937821	7937823	.	+	0	transcript_id "Ledus.S3G105700.t1"; gene_id "Ledus.S3G105700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3493.t1 is derived from g928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8753911	8754993	.	-	.	Ledus.S1G091400
Ledus.S1	AUGUSTUS	transcript	8753911	8754993	.	-	.	transcript_id "Ledus.S1G091400.t1"; gene_id "Ledus.S1G091400"
Ledus.S1	AUGUSTUS	stop_codon	8753908	8753910	.	-	0	transcript_id "Ledus.S1G091400.t1"; gene_id "Ledus.S1G091400"
Ledus.S1	AUGUSTUS	CDS	8753911	8754993	0.97	-	0	transcript_id "Ledus.S1G091400.t1"; gene_id "Ledus.S1G091400"
Ledus.S1	AUGUSTUS	exon	8753911	8754993	.	-	.	transcript_id "Ledus.S1G091400.t1"; gene_id "Ledus.S1G091400"
Ledus.S1	AUGUSTUS	start_codon	8754991	8754993	.	-	0	transcript_id "Ledus.S1G091400.t1"; gene_id "Ledus.S1G091400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10272.t1 is derived from g11302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13961715	13964586	.	-	.	Ledus.S3G174900
Ledus.S3	AUGUSTUS	transcript	13961715	13964586	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	stop_codon	13961712	13961714	.	-	0	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	CDS	13961715	13961802	1	-	1	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	exon	13961715	13961802	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	intron	13961803	13961974	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	CDS	13961975	13962087	1	-	0	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	exon	13961975	13962087	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	intron	13962088	13962179	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	CDS	13962180	13962314	1	-	0	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	exon	13962180	13962314	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	intron	13962315	13962410	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	CDS	13962411	13962501	1	-	1	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	exon	13962411	13962501	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	intron	13962502	13962644	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	CDS	13962645	13962713	1	-	1	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	exon	13962645	13962713	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	intron	13962714	13962833	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	CDS	13962834	13963021	1	-	0	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	exon	13962834	13963021	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	intron	13963022	13963304	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	CDS	13963305	13963439	1	-	0	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	exon	13963305	13963439	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	intron	13963440	13963524	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	CDS	13963525	13963599	1	-	0	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	exon	13963525	13963599	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	intron	13963600	13963742	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	CDS	13963743	13963983	0.99	-	1	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	exon	13963743	13963983	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	intron	13963984	13964066	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	CDS	13964067	13964145	0.95	-	2	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	exon	13964067	13964145	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	intron	13964146	13964253	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	CDS	13964254	13964346	0.94	-	2	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	exon	13964254	13964346	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	intron	13964347	13964576	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	CDS	13964577	13964586	0.91	-	0	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	exon	13964577	13964586	.	-	.	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
Ledus.S3	AUGUSTUS	start_codon	13964584	13964586	.	-	0	transcript_id "Ledus.S3G174900.t1"; gene_id "Ledus.S3G174900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7220.t1 is derived from g6468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C13	AUGUSTUS	gene	75777	76019	.	+	.	Ledus.C13G000300
Ledus.C13	AUGUSTUS	transcript	75777	76019	.	+	.	transcript_id "Ledus.C13G000300.t1"; gene_id "Ledus.C13G000300"
Ledus.C13	AUGUSTUS	start_codon	75777	75779	.	+	0	transcript_id "Ledus.C13G000300.t1"; gene_id "Ledus.C13G000300"
Ledus.C13	AUGUSTUS	CDS	75777	76019	0.93	+	0	transcript_id "Ledus.C13G000300.t1"; gene_id "Ledus.C13G000300"
Ledus.C13	AUGUSTUS	exon	75777	76019	.	+	.	transcript_id "Ledus.C13G000300.t1"; gene_id "Ledus.C13G000300"
Ledus.C13	AUGUSTUS	stop_codon	76020	76022	.	+	0	transcript_id "Ledus.C13G000300.t1"; gene_id "Ledus.C13G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12967.t1 is derived from g6777.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1276924	1277785	.	+	.	Ledus.S6G002900
Ledus.S6	AUGUSTUS	transcript	1276924	1277785	.	+	.	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	start_codon	1276924	1276926	.	+	0	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	CDS	1276924	1276926	0.71	+	0	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	exon	1276924	1276926	.	+	.	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	intron	1276927	1277054	.	+	.	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	CDS	1277055	1277119	0.71	+	0	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	exon	1277055	1277119	.	+	.	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	intron	1277120	1277280	.	+	.	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	CDS	1277281	1277331	0.56	+	1	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	exon	1277281	1277331	.	+	.	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	intron	1277332	1277472	.	+	.	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	CDS	1277473	1277785	0.37	+	1	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	exon	1277473	1277785	.	+	.	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
Ledus.S6	AUGUSTUS	stop_codon	1277786	1277788	.	+	0	transcript_id "Ledus.S6G002900.t1"; gene_id "Ledus.S6G002900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6920.t1 is derived from g4364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35365132	35365356	.	-	.	Ledus.S1G434100
Ledus.S1	AUGUSTUS	transcript	35365132	35365356	.	-	.	transcript_id "Ledus.S1G434100.t1"; gene_id "Ledus.S1G434100"
Ledus.S1	AUGUSTUS	stop_codon	35365129	35365131	.	-	0	transcript_id "Ledus.S1G434100.t1"; gene_id "Ledus.S1G434100"
Ledus.S1	AUGUSTUS	CDS	35365132	35365356	0.65	-	0	transcript_id "Ledus.S1G434100.t1"; gene_id "Ledus.S1G434100"
Ledus.S1	AUGUSTUS	exon	35365132	35365356	.	-	.	transcript_id "Ledus.S1G434100.t1"; gene_id "Ledus.S1G434100"
Ledus.S1	AUGUSTUS	start_codon	35365354	35365356	.	-	0	transcript_id "Ledus.S1G434100.t1"; gene_id "Ledus.S1G434100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8492.t1 is derived from g13164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12188222	12190758	.	+	.	Ledus.S5G127000
Ledus.S5	AUGUSTUS	transcript	12188222	12190758	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	start_codon	12188222	12188224	.	+	0	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	CDS	12188222	12188452	0.98	+	0	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	exon	12188222	12188452	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	intron	12188453	12188545	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	CDS	12188546	12188800	1	+	0	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	exon	12188546	12188800	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	intron	12188801	12188873	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	CDS	12188874	12189039	1	+	0	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	exon	12188874	12189039	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	intron	12189040	12189172	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	CDS	12189173	12189237	1	+	2	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	exon	12189173	12189237	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	intron	12189238	12189330	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	CDS	12189331	12189494	1	+	0	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	exon	12189331	12189494	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	intron	12189495	12189576	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	CDS	12189577	12189671	0.99	+	1	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	exon	12189577	12189671	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	intron	12189672	12189789	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	CDS	12189790	12189848	1	+	2	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	exon	12189790	12189848	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	intron	12189849	12189936	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	CDS	12189937	12190071	1	+	0	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	exon	12189937	12190071	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	intron	12190072	12190153	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	CDS	12190154	12190232	1	+	0	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	exon	12190154	12190232	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	intron	12190233	12190312	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	CDS	12190313	12190758	0.94	+	2	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	exon	12190313	12190758	.	+	.	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
Ledus.S5	AUGUSTUS	stop_codon	12190759	12190761	.	+	0	transcript_id "Ledus.S5G127000.t1"; gene_id "Ledus.S5G127000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11744.t1 is derived from g5363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6536870	6541489	.	-	.	Ledus.S4G090000
Ledus.S4	AUGUSTUS	transcript	6536870	6541489	.	-	.	transcript_id "Ledus.S4G090000.t1"; gene_id "Ledus.S4G090000"
Ledus.S4	AUGUSTUS	stop_codon	6536867	6536869	.	-	0	transcript_id "Ledus.S4G090000.t1"; gene_id "Ledus.S4G090000"
Ledus.S4	AUGUSTUS	CDS	6536870	6541489	0.73	-	0	transcript_id "Ledus.S4G090000.t1"; gene_id "Ledus.S4G090000"
Ledus.S4	AUGUSTUS	exon	6536870	6541489	.	-	.	transcript_id "Ledus.S4G090000.t1"; gene_id "Ledus.S4G090000"
Ledus.S4	AUGUSTUS	start_codon	6541487	6541489	.	-	0	transcript_id "Ledus.S4G090000.t1"; gene_id "Ledus.S4G090000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9028.t1 is derived from g10058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3932992	3933856	.	-	.	Ledus.S3G050500
Ledus.S3	AUGUSTUS	transcript	3932992	3933856	.	-	.	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	stop_codon	3932989	3932991	.	-	0	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	CDS	3932992	3933058	1	-	1	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	exon	3932992	3933058	.	-	.	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	intron	3933059	3933196	.	-	.	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	CDS	3933197	3933282	0.97	-	0	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	exon	3933197	3933282	.	-	.	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	intron	3933283	3933419	.	-	.	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	CDS	3933420	3933443	0.95	-	0	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	exon	3933420	3933443	.	-	.	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	intron	3933444	3933814	.	-	.	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	CDS	3933815	3933856	0.98	-	0	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	exon	3933815	3933856	.	-	.	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
Ledus.S3	AUGUSTUS	start_codon	3933854	3933856	.	-	0	transcript_id "Ledus.S3G050500.t1"; gene_id "Ledus.S3G050500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3732.t1 is derived from g1168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11247205	11249225	.	-	.	Ledus.S1G115300
Ledus.S1	AUGUSTUS	transcript	11247205	11249225	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	stop_codon	11247202	11247204	.	-	0	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	CDS	11247205	11247207	1	-	0	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	exon	11247205	11247207	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	intron	11247208	11247521	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	CDS	11247522	11247586	1	-	2	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	exon	11247522	11247586	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	intron	11247587	11247685	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	CDS	11247686	11247777	1	-	1	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	exon	11247686	11247777	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	intron	11247778	11247888	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	CDS	11247889	11248004	0.98	-	0	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	exon	11247889	11248004	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	intron	11248005	11248095	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	CDS	11248096	11248167	1	-	0	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	exon	11248096	11248167	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	intron	11248168	11248245	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	CDS	11248246	11248311	1	-	0	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	exon	11248246	11248311	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	intron	11248312	11248390	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	CDS	11248391	11248447	1	-	0	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	exon	11248391	11248447	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	intron	11248448	11248520	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	CDS	11248521	11248573	1	-	2	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	exon	11248521	11248573	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	intron	11248574	11248724	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	CDS	11248725	11248895	1	-	2	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	exon	11248725	11248895	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	intron	11248896	11248975	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	CDS	11248976	11249225	0.79	-	0	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	exon	11248976	11249225	.	-	.	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
Ledus.S1	AUGUSTUS	start_codon	11249223	11249225	.	-	0	transcript_id "Ledus.S1G115300.t1"; gene_id "Ledus.S1G115300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6607.t1 is derived from g4050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32631938	32633633	.	+	.	Ledus.S1G402800
Ledus.S1	AUGUSTUS	transcript	32631938	32633633	.	+	.	transcript_id "Ledus.S1G402800.t1"; gene_id "Ledus.S1G402800"
Ledus.S1	AUGUSTUS	start_codon	32631938	32631940	.	+	0	transcript_id "Ledus.S1G402800.t1"; gene_id "Ledus.S1G402800"
Ledus.S1	AUGUSTUS	CDS	32631938	32632526	0.8	+	0	transcript_id "Ledus.S1G402800.t1"; gene_id "Ledus.S1G402800"
Ledus.S1	AUGUSTUS	exon	32631938	32632526	.	+	.	transcript_id "Ledus.S1G402800.t1"; gene_id "Ledus.S1G402800"
Ledus.S1	AUGUSTUS	intron	32632527	32632716	.	+	.	transcript_id "Ledus.S1G402800.t1"; gene_id "Ledus.S1G402800"
Ledus.S1	AUGUSTUS	CDS	32632717	32632976	1	+	2	transcript_id "Ledus.S1G402800.t1"; gene_id "Ledus.S1G402800"
Ledus.S1	AUGUSTUS	exon	32632717	32632976	.	+	.	transcript_id "Ledus.S1G402800.t1"; gene_id "Ledus.S1G402800"
Ledus.S1	AUGUSTUS	intron	32632977	32633084	.	+	.	transcript_id "Ledus.S1G402800.t1"; gene_id "Ledus.S1G402800"
Ledus.S1	AUGUSTUS	CDS	32633085	32633633	1	+	0	transcript_id "Ledus.S1G402800.t1"; gene_id "Ledus.S1G402800"
Ledus.S1	AUGUSTUS	exon	32633085	32633633	.	+	.	transcript_id "Ledus.S1G402800.t1"; gene_id "Ledus.S1G402800"
Ledus.S1	AUGUSTUS	stop_codon	32633634	32633636	.	+	0	transcript_id "Ledus.S1G402800.t1"; gene_id "Ledus.S1G402800"
# This transcript jg504.t2 is derived from g7365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg505.t1 is derived from g7366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2963568	2968354	.	-	.	Ledus.S2G038700
Ledus.S2	AUGUSTUS	transcript	2963568	2968354	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	stop_codon	2963565	2963567	.	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2963568	2963619	0.29	-	1	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2963568	2963619	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2963620	2963713	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2963714	2963730	0.29	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2963714	2963730	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2963731	2963862	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2963863	2964186	0.46	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2963863	2964186	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2964187	2964381	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2964382	2964556	1	-	1	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2964382	2964556	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2964557	2964825	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2964826	2964956	1	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2964826	2964956	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2964957	2965088	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2965089	2965208	0.99	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2965089	2965208	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2965209	2965336	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2965337	2965413	1	-	2	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2965337	2965413	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2965414	2965527	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2965528	2965774	0.99	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2965528	2965774	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2965775	2965907	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2965908	2966070	0.99	-	1	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2965908	2966070	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2966071	2966175	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2966176	2966294	0.98	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2966176	2966294	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2966295	2966417	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2966418	2966552	1	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2966418	2966552	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2966553	2966730	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2966731	2967016	1	-	1	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2966731	2967016	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2967017	2967151	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2967152	2967378	1	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2967152	2967378	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2967379	2967532	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2967533	2967682	1	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2967533	2967682	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2967683	2967772	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2967773	2967955	1	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2967773	2967955	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	intron	2967956	2968054	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	CDS	2968055	2968354	0.72	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	exon	2968055	2968354	.	-	.	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
Ledus.S2	AUGUSTUS	start_codon	2968352	2968354	.	-	0	transcript_id "Ledus.S2G038700.t1"; gene_id "Ledus.S2G038700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5774.t1 is derived from g3216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26699355	26701379	.	+	.	Ledus.S1G319500
Ledus.S1	AUGUSTUS	transcript	26699355	26701379	.	+	.	transcript_id "Ledus.S1G319500.t1"; gene_id "Ledus.S1G319500"
Ledus.S1	AUGUSTUS	start_codon	26699355	26699357	.	+	0	transcript_id "Ledus.S1G319500.t1"; gene_id "Ledus.S1G319500"
Ledus.S1	AUGUSTUS	CDS	26699355	26701379	0.91	+	0	transcript_id "Ledus.S1G319500.t1"; gene_id "Ledus.S1G319500"
Ledus.S1	AUGUSTUS	exon	26699355	26701379	.	+	.	transcript_id "Ledus.S1G319500.t1"; gene_id "Ledus.S1G319500"
Ledus.S1	AUGUSTUS	stop_codon	26701380	26701382	.	+	0	transcript_id "Ledus.S1G319500.t1"; gene_id "Ledus.S1G319500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11620.t1 is derived from g5238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5598581	5599324	.	-	.	Ledus.S4G077600
Ledus.S4	AUGUSTUS	transcript	5598581	5599324	.	-	.	transcript_id "Ledus.S4G077600.t1"; gene_id "Ledus.S4G077600"
Ledus.S4	AUGUSTUS	stop_codon	5598578	5598580	.	-	0	transcript_id "Ledus.S4G077600.t1"; gene_id "Ledus.S4G077600"
Ledus.S4	AUGUSTUS	CDS	5598581	5599129	0.81	-	0	transcript_id "Ledus.S4G077600.t1"; gene_id "Ledus.S4G077600"
Ledus.S4	AUGUSTUS	exon	5598581	5599129	.	-	.	transcript_id "Ledus.S4G077600.t1"; gene_id "Ledus.S4G077600"
Ledus.S4	AUGUSTUS	intron	5599130	5599207	.	-	.	transcript_id "Ledus.S4G077600.t1"; gene_id "Ledus.S4G077600"
Ledus.S4	AUGUSTUS	CDS	5599208	5599324	0.98	-	0	transcript_id "Ledus.S4G077600.t1"; gene_id "Ledus.S4G077600"
Ledus.S4	AUGUSTUS	exon	5599208	5599324	.	-	.	transcript_id "Ledus.S4G077600.t1"; gene_id "Ledus.S4G077600"
Ledus.S4	AUGUSTUS	start_codon	5599322	5599324	.	-	0	transcript_id "Ledus.S4G077600.t1"; gene_id "Ledus.S4G077600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9561.t1 is derived from g10591.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7781003	7782068	.	-	.	Ledus.S3G103800
Ledus.S3	AUGUSTUS	transcript	7781003	7782068	.	-	.	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	stop_codon	7781000	7781002	.	-	0	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	CDS	7781003	7781263	1	-	0	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	exon	7781003	7781263	.	-	.	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	intron	7781264	7781393	.	-	.	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	CDS	7781394	7781538	1	-	1	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	exon	7781394	7781538	.	-	.	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	intron	7781539	7781645	.	-	.	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	CDS	7781646	7781706	1	-	2	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	exon	7781646	7781706	.	-	.	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	intron	7781707	7781797	.	-	.	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	CDS	7781798	7782068	0.88	-	0	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	exon	7781798	7782068	.	-	.	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
Ledus.S3	AUGUSTUS	start_codon	7782066	7782068	.	-	0	transcript_id "Ledus.S3G103800.t1"; gene_id "Ledus.S3G103800"
# This transcript jg4983.t2 is derived from g2421.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4984.t1 is derived from g2422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20972231	20980761	.	-	.	Ledus.S1G240500
Ledus.S1	AUGUSTUS	transcript	20972231	20980761	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	stop_codon	20972228	20972230	.	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20972231	20972489	0.99	-	1	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20972231	20972489	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20972490	20972598	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20972599	20973482	0.92	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20972599	20973482	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20973483	20973566	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20973567	20974985	0.88	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20973567	20974985	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20974986	20975312	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20975313	20975334	0.5	-	1	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20975313	20975334	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20975335	20975420	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20975421	20975473	0.35	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20975421	20975473	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20975474	20975962	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20975963	20976244	0.42	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20975963	20976244	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20976245	20976319	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20976320	20976517	1	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20976320	20976517	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20976518	20976596	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20976597	20976689	1	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20976597	20976689	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20976690	20976788	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20976789	20976918	1	-	1	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20976789	20976918	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20976919	20976999	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20977000	20977298	1	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20977000	20977298	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20977299	20977402	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20977403	20977465	0.7	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20977403	20977465	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20977466	20977571	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20977572	20977638	0.99	-	1	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20977572	20977638	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20977639	20977748	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20977749	20977882	1	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20977749	20977882	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20977883	20977999	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20978000	20978066	1	-	1	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20978000	20978066	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20978067	20978141	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20978142	20978323	1	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20978142	20978323	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20978324	20978447	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20978448	20978630	1	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20978448	20978630	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20978631	20978713	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20978714	20978846	0.98	-	1	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20978714	20978846	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20978847	20978950	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20978951	20979045	0.98	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20978951	20979045	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20979046	20979141	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20979142	20979213	1	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20979142	20979213	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20979214	20979396	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20979397	20979537	1	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20979397	20979537	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20979538	20979624	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20979625	20979756	1	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20979625	20979756	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20979757	20979849	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20979850	20979908	1	-	2	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20979850	20979908	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20979909	20979992	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20979993	20980092	1	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20979993	20980092	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20980093	20980323	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20980324	20980761	0.58	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20980324	20980761	.	-	.	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	start_codon	20980759	20980761	.	-	0	transcript_id "Ledus.S1G240500.t1"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	transcript	20972231	20980761	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	stop_codon	20972228	20972230	.	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20972231	20972489	0.97	-	1	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20972231	20972489	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20972490	20972598	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20972599	20973482	0.95	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20972599	20973482	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20973483	20973566	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20973567	20974985	0.91	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20973567	20974985	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20974986	20975312	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20975313	20975334	0.57	-	1	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20975313	20975334	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20975335	20975420	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20975421	20975473	0.36	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20975421	20975473	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20975474	20975962	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20975963	20976244	0.49	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20975963	20976244	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20976245	20976319	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20976320	20976517	1	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20976320	20976517	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20976518	20976596	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20976597	20976689	1	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20976597	20976689	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20976690	20976788	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20976789	20976918	1	-	1	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20976789	20976918	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20976919	20976999	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20977000	20977298	1	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20977000	20977298	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20977299	20977402	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20977403	20977465	0.56	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20977403	20977465	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20977466	20977571	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20977572	20977638	1	-	1	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20977572	20977638	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20977639	20977748	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20977749	20977882	1	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20977749	20977882	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20977883	20977999	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20978000	20978066	1	-	1	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20978000	20978066	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20978067	20978141	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20978142	20978323	1	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20978142	20978323	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20978324	20978447	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20978448	20978630	1	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20978448	20978630	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20978631	20978713	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20978714	20978846	0.91	-	1	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20978714	20978846	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20978847	20978950	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20978951	20979045	0.91	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20978951	20979045	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20979046	20979141	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20979142	20979213	1	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20979142	20979213	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20979214	20979396	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20979397	20979537	1	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20979397	20979537	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20979538	20979624	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20979625	20979756	1	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20979625	20979756	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20979757	20979849	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20979850	20979908	1	-	2	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20979850	20979908	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20979909	20979992	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20979993	20980179	1	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20979993	20980179	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	intron	20980180	20980323	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	CDS	20980324	20980761	0.58	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	exon	20980324	20980761	.	-	.	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
Ledus.S1	AUGUSTUS	start_codon	20980759	20980761	.	-	0	transcript_id "Ledus.S1G240500.t2"; gene_id "Ledus.S1G240500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4142.t1 is derived from g1578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14929689	14931056	.	-	.	Ledus.S1G156300
Ledus.S1	AUGUSTUS	transcript	14929689	14931056	.	-	.	transcript_id "Ledus.S1G156300.t1"; gene_id "Ledus.S1G156300"
Ledus.S1	AUGUSTUS	stop_codon	14929686	14929688	.	-	0	transcript_id "Ledus.S1G156300.t1"; gene_id "Ledus.S1G156300"
Ledus.S1	AUGUSTUS	CDS	14929689	14931056	0.92	-	0	transcript_id "Ledus.S1G156300.t1"; gene_id "Ledus.S1G156300"
Ledus.S1	AUGUSTUS	exon	14929689	14931056	.	-	.	transcript_id "Ledus.S1G156300.t1"; gene_id "Ledus.S1G156300"
Ledus.S1	AUGUSTUS	start_codon	14931054	14931056	.	-	0	transcript_id "Ledus.S1G156300.t1"; gene_id "Ledus.S1G156300"
# This transcript jg9729.t2 is derived from g10759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9730.t1 is derived from g10760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9470600	9474058	.	-	.	Ledus.S3G120700
Ledus.S3	AUGUSTUS	transcript	9470600	9474058	.	-	.	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	stop_codon	9470597	9470599	.	-	0	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	CDS	9470600	9470726	0.94	-	1	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	exon	9470600	9470726	.	-	.	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	intron	9470727	9470918	.	-	.	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	CDS	9470919	9470978	1	-	1	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	exon	9470919	9470978	.	-	.	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	intron	9470979	9471169	.	-	.	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	CDS	9471170	9471292	0.87	-	1	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	exon	9471170	9471292	.	-	.	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	intron	9471293	9471403	.	-	.	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	CDS	9471404	9471858	0.94	-	0	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	exon	9471404	9471858	.	-	.	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	intron	9471859	9472056	.	-	.	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	CDS	9472057	9472620	0.94	-	0	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	exon	9472057	9472620	.	-	.	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	intron	9472621	9473149	.	-	.	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	CDS	9473150	9474058	0.78	-	0	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	exon	9473150	9474058	.	-	.	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
Ledus.S3	AUGUSTUS	start_codon	9474056	9474058	.	-	0	transcript_id "Ledus.S3G120700.t1"; gene_id "Ledus.S3G120700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12174.t1 is derived from g5793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10148029	10151266	.	+	.	Ledus.S4G133000
Ledus.S4	AUGUSTUS	transcript	10148029	10151266	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	start_codon	10148029	10148031	.	+	0	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	CDS	10148029	10148096	0.73	+	0	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	exon	10148029	10148096	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	intron	10148097	10148419	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	CDS	10148420	10148432	0.99	+	1	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	exon	10148420	10148432	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	intron	10148433	10148505	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	CDS	10148506	10148840	0.99	+	0	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	exon	10148506	10148840	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	intron	10148841	10148924	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	CDS	10148925	10149018	1	+	1	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	exon	10148925	10149018	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	intron	10149019	10149956	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	CDS	10149957	10150086	1	+	0	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	exon	10149957	10150086	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	intron	10150087	10150154	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	CDS	10150155	10150287	1	+	2	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	exon	10150155	10150287	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	intron	10150288	10150378	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	CDS	10150379	10150586	1	+	1	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	exon	10150379	10150586	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	intron	10150587	10150671	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	CDS	10150672	10150773	0.78	+	0	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	exon	10150672	10150773	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	intron	10150774	10151059	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	CDS	10151060	10151266	0.38	+	0	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	exon	10151060	10151266	.	+	.	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
Ledus.S4	AUGUSTUS	stop_codon	10151267	10151269	.	+	0	transcript_id "Ledus.S4G133000.t1"; gene_id "Ledus.S4G133000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4905.t1 is derived from g2343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20594007	20594366	.	-	.	Ledus.S1G232600
Ledus.S1	AUGUSTUS	transcript	20594007	20594366	.	-	.	transcript_id "Ledus.S1G232600.t1"; gene_id "Ledus.S1G232600"
Ledus.S1	AUGUSTUS	stop_codon	20594004	20594006	.	-	0	transcript_id "Ledus.S1G232600.t1"; gene_id "Ledus.S1G232600"
Ledus.S1	AUGUSTUS	CDS	20594007	20594366	0.3	-	0	transcript_id "Ledus.S1G232600.t1"; gene_id "Ledus.S1G232600"
Ledus.S1	AUGUSTUS	exon	20594007	20594366	.	-	.	transcript_id "Ledus.S1G232600.t1"; gene_id "Ledus.S1G232600"
Ledus.S1	AUGUSTUS	start_codon	20594364	20594366	.	-	0	transcript_id "Ledus.S1G232600.t1"; gene_id "Ledus.S1G232600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg201.t1 is derived from g7062.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	792021	792410	.	-	.	Ledus.S2G008300
Ledus.S2	AUGUSTUS	transcript	792021	792410	.	-	.	transcript_id "Ledus.S2G008300.t1"; gene_id "Ledus.S2G008300"
Ledus.S2	AUGUSTUS	stop_codon	792018	792020	.	-	0	transcript_id "Ledus.S2G008300.t1"; gene_id "Ledus.S2G008300"
Ledus.S2	AUGUSTUS	CDS	792021	792410	0.57	-	0	transcript_id "Ledus.S2G008300.t1"; gene_id "Ledus.S2G008300"
Ledus.S2	AUGUSTUS	exon	792021	792410	.	-	.	transcript_id "Ledus.S2G008300.t1"; gene_id "Ledus.S2G008300"
Ledus.S2	AUGUSTUS	start_codon	792408	792410	.	-	0	transcript_id "Ledus.S2G008300.t1"; gene_id "Ledus.S2G008300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg264.t1 is derived from g7125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1286614	1289357	.	+	.	Ledus.S2G014600
Ledus.S2	AUGUSTUS	transcript	1286614	1289357	.	+	.	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	start_codon	1286614	1286616	.	+	0	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	CDS	1286614	1286616	0.65	+	0	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	exon	1286614	1286616	.	+	.	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	intron	1286617	1286781	.	+	.	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	CDS	1286782	1287025	0.66	+	0	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	exon	1286782	1287025	.	+	.	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	intron	1287026	1287108	.	+	.	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	CDS	1287109	1287326	1	+	2	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	exon	1287109	1287326	.	+	.	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	intron	1287327	1287473	.	+	.	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	CDS	1287474	1288132	0.95	+	0	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	exon	1287474	1288132	.	+	.	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	intron	1288133	1288221	.	+	.	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	CDS	1288222	1288648	0.93	+	1	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	exon	1288222	1288648	.	+	.	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	intron	1288649	1288751	.	+	.	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	CDS	1288752	1289357	1	+	0	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	exon	1288752	1289357	.	+	.	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	stop_codon	1289358	1289360	.	+	0	transcript_id "Ledus.S2G014600.t1"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	transcript	1286614	1287129	.	+	.	transcript_id "Ledus.S2G014600.t2"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	start_codon	1286614	1286616	.	+	0	transcript_id "Ledus.S2G014600.t2"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	CDS	1286614	1286616	0.61	+	0	transcript_id "Ledus.S2G014600.t2"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	exon	1286614	1286616	.	+	.	transcript_id "Ledus.S2G014600.t2"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	intron	1286617	1286781	.	+	.	transcript_id "Ledus.S2G014600.t2"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	CDS	1286782	1286979	0.34	+	0	transcript_id "Ledus.S2G014600.t2"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	exon	1286782	1286979	.	+	.	transcript_id "Ledus.S2G014600.t2"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	intron	1286980	1287108	.	+	.	transcript_id "Ledus.S2G014600.t2"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	CDS	1287109	1287129	0.64	+	0	transcript_id "Ledus.S2G014600.t2"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	exon	1287109	1287129	.	+	.	transcript_id "Ledus.S2G014600.t2"; gene_id "Ledus.S2G014600"
Ledus.S2	AUGUSTUS	stop_codon	1287130	1287132	.	+	0	transcript_id "Ledus.S2G014600.t2"; gene_id "Ledus.S2G014600"
# This transcript jg5392.t2 is derived from g2831.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5393.t1 is derived from g2832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23976805	23979086	.	-	.	Ledus.S1G281400
Ledus.S1	AUGUSTUS	transcript	23976805	23979086	.	-	.	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	stop_codon	23976802	23976804	.	-	0	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	CDS	23976805	23977249	1	-	1	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	exon	23976805	23977249	.	-	.	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	intron	23977250	23977333	.	-	.	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	CDS	23977334	23977473	1	-	0	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	exon	23977334	23977473	.	-	.	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	intron	23977474	23977551	.	-	.	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	CDS	23977552	23977650	1	-	0	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	exon	23977552	23977650	.	-	.	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	intron	23977651	23977736	.	-	.	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	CDS	23977737	23978507	1	-	0	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	exon	23977737	23978507	.	-	.	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	intron	23978508	23978609	.	-	.	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	CDS	23978610	23979086	0.65	-	0	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	exon	23978610	23979086	.	-	.	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
Ledus.S1	AUGUSTUS	start_codon	23979084	23979086	.	-	0	transcript_id "Ledus.S1G281400.t1"; gene_id "Ledus.S1G281400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5065.t1 is derived from g2504.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21425462	21427750	.	+	.	Ledus.S1G248600
Ledus.S1	AUGUSTUS	transcript	21425462	21427750	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	start_codon	21425462	21425464	.	+	0	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	CDS	21425462	21425876	0.99	+	0	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	exon	21425462	21425876	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	intron	21425877	21426156	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	CDS	21426157	21426304	1	+	2	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	exon	21426157	21426304	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	intron	21426305	21426493	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	CDS	21426494	21426685	1	+	1	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	exon	21426494	21426685	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	intron	21426686	21426771	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	CDS	21426772	21426900	1	+	1	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	exon	21426772	21426900	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	intron	21426901	21427108	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	CDS	21427109	21427278	1	+	1	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	exon	21427109	21427278	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	intron	21427279	21427453	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	CDS	21427454	21427584	1	+	2	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	exon	21427454	21427584	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	intron	21427585	21427681	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	CDS	21427682	21427750	0.97	+	0	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	exon	21427682	21427750	.	+	.	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
Ledus.S1	AUGUSTUS	stop_codon	21427751	21427753	.	+	0	transcript_id "Ledus.S1G248600.t1"; gene_id "Ledus.S1G248600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8413.t1 is derived from g13085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11531179	11532126	.	-	.	Ledus.S5G119100
Ledus.S5	AUGUSTUS	transcript	11531179	11532126	.	-	.	transcript_id "Ledus.S5G119100.t1"; gene_id "Ledus.S5G119100"
Ledus.S5	AUGUSTUS	stop_codon	11531176	11531178	.	-	0	transcript_id "Ledus.S5G119100.t1"; gene_id "Ledus.S5G119100"
Ledus.S5	AUGUSTUS	CDS	11531179	11532126	1	-	0	transcript_id "Ledus.S5G119100.t1"; gene_id "Ledus.S5G119100"
Ledus.S5	AUGUSTUS	exon	11531179	11532126	.	-	.	transcript_id "Ledus.S5G119100.t1"; gene_id "Ledus.S5G119100"
Ledus.S5	AUGUSTUS	start_codon	11532124	11532126	.	-	0	transcript_id "Ledus.S5G119100.t1"; gene_id "Ledus.S5G119100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1672.t1 is derived from g8533.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11791979	11793907	.	-	.	Ledus.S2G155400
Ledus.S2	AUGUSTUS	transcript	11791979	11793907	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	stop_codon	11791976	11791978	.	-	0	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	CDS	11791979	11792194	0.94	-	0	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	exon	11791979	11792194	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	intron	11792195	11792271	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	CDS	11792272	11792358	1	-	0	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	exon	11792272	11792358	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	intron	11792359	11792434	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	CDS	11792435	11792571	1	-	2	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	exon	11792435	11792571	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	intron	11792572	11792649	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	CDS	11792650	11792738	1	-	1	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	exon	11792650	11792738	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	intron	11792739	11792818	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	CDS	11792819	11792889	1	-	0	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	exon	11792819	11792889	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	intron	11792890	11792962	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	CDS	11792963	11793031	1	-	0	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	exon	11792963	11793031	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	intron	11793032	11793121	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	CDS	11793122	11793209	1	-	1	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	exon	11793122	11793209	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	intron	11793210	11793299	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	CDS	11793300	11793372	1	-	2	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	exon	11793300	11793372	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	intron	11793373	11793460	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	CDS	11793461	11793517	1	-	2	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	exon	11793461	11793517	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	intron	11793518	11793589	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	CDS	11793590	11793689	1	-	0	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	exon	11793590	11793689	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	intron	11793690	11793853	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	CDS	11793854	11793907	0.98	-	0	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	exon	11793854	11793907	.	-	.	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
Ledus.S2	AUGUSTUS	start_codon	11793905	11793907	.	-	0	transcript_id "Ledus.S2G155400.t1"; gene_id "Ledus.S2G155400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3113.t1 is derived from g548.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6112703	6114034	.	-	.	Ledus.S1G053400
Ledus.S1	AUGUSTUS	transcript	6112703	6114034	.	-	.	transcript_id "Ledus.S1G053400.t1"; gene_id "Ledus.S1G053400"
Ledus.S1	AUGUSTUS	stop_codon	6112700	6112702	.	-	0	transcript_id "Ledus.S1G053400.t1"; gene_id "Ledus.S1G053400"
Ledus.S1	AUGUSTUS	CDS	6112703	6113149	1	-	0	transcript_id "Ledus.S1G053400.t1"; gene_id "Ledus.S1G053400"
Ledus.S1	AUGUSTUS	exon	6112703	6113149	.	-	.	transcript_id "Ledus.S1G053400.t1"; gene_id "Ledus.S1G053400"
Ledus.S1	AUGUSTUS	intron	6113150	6113248	.	-	.	transcript_id "Ledus.S1G053400.t1"; gene_id "Ledus.S1G053400"
Ledus.S1	AUGUSTUS	CDS	6113249	6114034	0.98	-	0	transcript_id "Ledus.S1G053400.t1"; gene_id "Ledus.S1G053400"
Ledus.S1	AUGUSTUS	exon	6113249	6114034	.	-	.	transcript_id "Ledus.S1G053400.t1"; gene_id "Ledus.S1G053400"
Ledus.S1	AUGUSTUS	start_codon	6114032	6114034	.	-	0	transcript_id "Ledus.S1G053400.t1"; gene_id "Ledus.S1G053400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6939.t1 is derived from g4383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35672553	35674057	.	-	.	Ledus.S1G436000
Ledus.S1	AUGUSTUS	transcript	35672553	35674057	.	-	.	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	stop_codon	35672550	35672552	.	-	0	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	CDS	35672553	35672601	0.33	-	1	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	exon	35672553	35672601	.	-	.	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	intron	35672602	35672699	.	-	.	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	CDS	35672700	35673038	0.34	-	1	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	exon	35672700	35673038	.	-	.	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	intron	35673039	35673243	.	-	.	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	CDS	35673244	35673302	0.71	-	0	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	exon	35673244	35673302	.	-	.	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	intron	35673303	35673426	.	-	.	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	CDS	35673427	35673557	0.74	-	2	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	exon	35673427	35673557	.	-	.	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	intron	35673558	35673727	.	-	.	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	CDS	35673728	35673761	0.85	-	0	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	exon	35673728	35673761	.	-	.	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	intron	35673762	35673961	.	-	.	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	CDS	35673962	35674057	0.69	-	0	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	exon	35673962	35674057	.	-	.	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
Ledus.S1	AUGUSTUS	start_codon	35674055	35674057	.	-	0	transcript_id "Ledus.S1G436000.t1"; gene_id "Ledus.S1G436000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9318.t1 is derived from g10348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6061357	6064303	.	-	.	Ledus.S3G079500
Ledus.S3	AUGUSTUS	transcript	6061357	6064303	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	stop_codon	6061354	6061356	.	-	0	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	CDS	6061357	6063082	0.37	-	1	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	exon	6061357	6063082	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	intron	6063083	6063164	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	CDS	6063165	6063240	0.39	-	2	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	exon	6063165	6063240	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	intron	6063241	6063320	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	CDS	6063321	6063526	0.4	-	1	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	exon	6063321	6063526	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	intron	6063527	6063646	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	CDS	6063647	6063718	0.96	-	1	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	exon	6063647	6063718	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	intron	6063719	6063888	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	CDS	6063889	6063908	0.96	-	0	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	exon	6063889	6063908	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	intron	6063909	6064137	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	CDS	6064138	6064158	0.87	-	0	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	exon	6064138	6064158	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	intron	6064159	6064294	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	CDS	6064295	6064303	0.69	-	0	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	exon	6064295	6064303	.	-	.	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
Ledus.S3	AUGUSTUS	start_codon	6064301	6064303	.	-	0	transcript_id "Ledus.S3G079500.t1"; gene_id "Ledus.S3G079500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12192.t1 is derived from g5811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10235062	10237060	.	-	.	Ledus.S4G134800
Ledus.S4	AUGUSTUS	transcript	10235062	10237060	.	-	.	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	stop_codon	10235059	10235061	.	-	0	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	CDS	10235062	10235139	0.99	-	0	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	exon	10235062	10235139	.	-	.	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	intron	10235140	10235233	.	-	.	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	CDS	10235234	10235728	0.65	-	0	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	exon	10235234	10235728	.	-	.	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	intron	10235729	10235814	.	-	.	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	CDS	10235815	10236948	1	-	0	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	exon	10235815	10236948	.	-	.	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	intron	10236949	10237036	.	-	.	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	CDS	10237037	10237060	0.74	-	0	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	exon	10237037	10237060	.	-	.	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
Ledus.S4	AUGUSTUS	start_codon	10237058	10237060	.	-	0	transcript_id "Ledus.S4G134800.t1"; gene_id "Ledus.S4G134800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5176.t1 is derived from g2615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22161987	22163180	.	+	.	Ledus.S1G259700
Ledus.S1	AUGUSTUS	transcript	22161987	22163180	.	+	.	transcript_id "Ledus.S1G259700.t1"; gene_id "Ledus.S1G259700"
Ledus.S1	AUGUSTUS	start_codon	22161987	22161989	.	+	0	transcript_id "Ledus.S1G259700.t1"; gene_id "Ledus.S1G259700"
Ledus.S1	AUGUSTUS	CDS	22161987	22163180	0.89	+	0	transcript_id "Ledus.S1G259700.t1"; gene_id "Ledus.S1G259700"
Ledus.S1	AUGUSTUS	exon	22161987	22163180	.	+	.	transcript_id "Ledus.S1G259700.t1"; gene_id "Ledus.S1G259700"
Ledus.S1	AUGUSTUS	stop_codon	22163181	22163183	.	+	0	transcript_id "Ledus.S1G259700.t1"; gene_id "Ledus.S1G259700"
# This transcript jg2129.t2 is derived from g8992.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2129.t3 is derived from g8992.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2130.t1 is derived from g8993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14932838	14934070	.	-	.	Ledus.S2G201200
Ledus.S2	AUGUSTUS	transcript	14932838	14934070	.	-	.	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	stop_codon	14932835	14932837	.	-	0	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	CDS	14932838	14933235	1	-	2	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	exon	14932838	14933235	.	-	.	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	intron	14933236	14933307	.	-	.	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	CDS	14933308	14933473	1	-	0	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	exon	14933308	14933473	.	-	.	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	intron	14933474	14933559	.	-	.	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	CDS	14933560	14933754	1	-	0	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	exon	14933560	14933754	.	-	.	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	intron	14933755	14933836	.	-	.	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	CDS	14933837	14934070	0.7	-	0	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	exon	14933837	14934070	.	-	.	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
Ledus.S2	AUGUSTUS	start_codon	14934068	14934070	.	-	0	transcript_id "Ledus.S2G201200.t1"; gene_id "Ledus.S2G201200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6724.t1 is derived from g4167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33539018	33539669	.	+	.	Ledus.S1G414500
Ledus.S1	AUGUSTUS	transcript	33539018	33539669	.	+	.	transcript_id "Ledus.S1G414500.t1"; gene_id "Ledus.S1G414500"
Ledus.S1	AUGUSTUS	start_codon	33539018	33539020	.	+	0	transcript_id "Ledus.S1G414500.t1"; gene_id "Ledus.S1G414500"
Ledus.S1	AUGUSTUS	CDS	33539018	33539159	0.9	+	0	transcript_id "Ledus.S1G414500.t1"; gene_id "Ledus.S1G414500"
Ledus.S1	AUGUSTUS	exon	33539018	33539159	.	+	.	transcript_id "Ledus.S1G414500.t1"; gene_id "Ledus.S1G414500"
Ledus.S1	AUGUSTUS	intron	33539160	33539279	.	+	.	transcript_id "Ledus.S1G414500.t1"; gene_id "Ledus.S1G414500"
Ledus.S1	AUGUSTUS	CDS	33539280	33539384	1	+	2	transcript_id "Ledus.S1G414500.t1"; gene_id "Ledus.S1G414500"
Ledus.S1	AUGUSTUS	exon	33539280	33539384	.	+	.	transcript_id "Ledus.S1G414500.t1"; gene_id "Ledus.S1G414500"
Ledus.S1	AUGUSTUS	intron	33539385	33539559	.	+	.	transcript_id "Ledus.S1G414500.t1"; gene_id "Ledus.S1G414500"
Ledus.S1	AUGUSTUS	CDS	33539560	33539669	0.97	+	2	transcript_id "Ledus.S1G414500.t1"; gene_id "Ledus.S1G414500"
Ledus.S1	AUGUSTUS	exon	33539560	33539669	.	+	.	transcript_id "Ledus.S1G414500.t1"; gene_id "Ledus.S1G414500"
Ledus.S1	AUGUSTUS	stop_codon	33539670	33539672	.	+	0	transcript_id "Ledus.S1G414500.t1"; gene_id "Ledus.S1G414500"
# This transcript jg2439.t2 is derived from g9302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2440.t1 is derived from g9303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18115369	18119787	.	+	.	Ledus.S2G232200
Ledus.S2	AUGUSTUS	transcript	18115369	18119787	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	start_codon	18115369	18115371	.	+	0	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18115369	18115482	1	+	0	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18115369	18115482	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18115483	18115620	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18115621	18115734	1	+	0	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18115621	18115734	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18115735	18115827	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18115828	18115915	0.69	+	0	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18115828	18115915	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18115916	18116157	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18116158	18116673	0.42	+	2	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18116158	18116673	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18116674	18116811	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18116812	18116968	1	+	2	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18116812	18116968	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18116969	18117108	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18117109	18117200	1	+	1	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18117109	18117200	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18117201	18117294	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18117295	18117505	1	+	2	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18117295	18117505	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18117506	18117577	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18117578	18117680	1	+	1	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18117578	18117680	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18117681	18117808	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18117809	18117942	1	+	0	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18117809	18117942	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18117943	18118038	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18118039	18118340	1	+	1	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18118039	18118340	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18118341	18118521	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18118522	18118585	1	+	2	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18118522	18118585	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18118586	18118674	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18118675	18118738	1	+	1	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18118675	18118738	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18118739	18118865	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18118866	18118982	1	+	0	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18118866	18118982	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18118983	18119073	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18119074	18119355	1	+	0	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18119074	18119355	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18119356	18119447	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18119448	18119534	0.98	+	0	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18119448	18119534	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	intron	18119535	18119640	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	CDS	18119641	18119787	0.96	+	0	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	exon	18119641	18119787	.	+	.	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
Ledus.S2	AUGUSTUS	stop_codon	18119788	18119790	.	+	0	transcript_id "Ledus.S2G232200.t1"; gene_id "Ledus.S2G232200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12935.t1 is derived from g4427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	421181	425004	.	+	.	Ledus.C9G004300
Ledus.C9	AUGUSTUS	transcript	421181	425004	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	start_codon	421181	421183	.	+	0	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	CDS	421181	421259	0.76	+	0	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	exon	421181	421259	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	intron	421260	421346	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	CDS	421347	421445	1	+	2	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	exon	421347	421445	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	intron	421446	421934	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	CDS	421935	422067	1	+	2	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	exon	421935	422067	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	intron	422068	422209	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	CDS	422210	422281	1	+	1	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	exon	422210	422281	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	intron	422282	422438	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	CDS	422439	422582	1	+	1	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	exon	422439	422582	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	intron	422583	422784	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	CDS	422785	422856	1	+	1	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	exon	422785	422856	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	intron	422857	422992	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	CDS	422993	423064	1	+	1	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	exon	422993	423064	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	intron	423065	423258	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	CDS	423259	423347	1	+	1	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	exon	423259	423347	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	intron	423348	423444	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	CDS	423445	423579	1	+	2	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	exon	423445	423579	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	intron	423580	423706	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	CDS	423707	424048	0.99	+	2	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	exon	423707	424048	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	intron	424049	424174	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	CDS	424175	424569	1	+	2	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	exon	424175	424569	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	intron	424570	424689	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	CDS	424690	425004	1	+	0	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	exon	424690	425004	.	+	.	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
Ledus.C9	AUGUSTUS	stop_codon	425005	425007	.	+	0	transcript_id "Ledus.C9G004300.t1"; gene_id "Ledus.C9G004300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9367.t1 is derived from g10397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6397201	6399184	.	-	.	Ledus.S3G084400
Ledus.S3	AUGUSTUS	transcript	6397201	6399184	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	stop_codon	6397198	6397200	.	-	0	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	CDS	6397201	6397297	1	-	1	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	exon	6397201	6397297	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	intron	6397298	6397399	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	CDS	6397400	6397468	1	-	1	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	exon	6397400	6397468	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	intron	6397469	6397551	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	CDS	6397552	6397615	1	-	2	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	exon	6397552	6397615	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	intron	6397616	6397840	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	CDS	6397841	6397970	0.94	-	0	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	exon	6397841	6397970	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	intron	6397971	6398087	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	CDS	6398088	6398169	0.98	-	1	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	exon	6398088	6398169	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	intron	6398170	6398247	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	CDS	6398248	6398407	1	-	2	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	exon	6398248	6398407	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	intron	6398408	6398520	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	CDS	6398521	6398600	1	-	1	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	exon	6398521	6398600	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	intron	6398601	6398693	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	CDS	6398694	6398910	0.83	-	2	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	exon	6398694	6398910	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	intron	6398911	6399033	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	CDS	6399034	6399184	0.87	-	0	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	exon	6399034	6399184	.	-	.	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
Ledus.S3	AUGUSTUS	start_codon	6399182	6399184	.	-	0	transcript_id "Ledus.S3G084400.t1"; gene_id "Ledus.S3G084400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg249.t1 is derived from g7110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1128362	1130167	.	-	.	Ledus.S2G013100
Ledus.S2	AUGUSTUS	transcript	1128362	1130167	.	-	.	transcript_id "Ledus.S2G013100.t1"; gene_id "Ledus.S2G013100"
Ledus.S2	AUGUSTUS	stop_codon	1128359	1128361	.	-	0	transcript_id "Ledus.S2G013100.t1"; gene_id "Ledus.S2G013100"
Ledus.S2	AUGUSTUS	CDS	1128362	1128378	0.89	-	2	transcript_id "Ledus.S2G013100.t1"; gene_id "Ledus.S2G013100"
Ledus.S2	AUGUSTUS	exon	1128362	1128378	.	-	.	transcript_id "Ledus.S2G013100.t1"; gene_id "Ledus.S2G013100"
Ledus.S2	AUGUSTUS	intron	1128379	1128526	.	-	.	transcript_id "Ledus.S2G013100.t1"; gene_id "Ledus.S2G013100"
Ledus.S2	AUGUSTUS	CDS	1128527	1128599	0.51	-	0	transcript_id "Ledus.S2G013100.t1"; gene_id "Ledus.S2G013100"
Ledus.S2	AUGUSTUS	exon	1128527	1128599	.	-	.	transcript_id "Ledus.S2G013100.t1"; gene_id "Ledus.S2G013100"
Ledus.S2	AUGUSTUS	intron	1128600	1128697	.	-	.	transcript_id "Ledus.S2G013100.t1"; gene_id "Ledus.S2G013100"
Ledus.S2	AUGUSTUS	CDS	1128698	1130167	0.39	-	0	transcript_id "Ledus.S2G013100.t1"; gene_id "Ledus.S2G013100"
Ledus.S2	AUGUSTUS	exon	1128698	1130167	.	-	.	transcript_id "Ledus.S2G013100.t1"; gene_id "Ledus.S2G013100"
Ledus.S2	AUGUSTUS	start_codon	1130165	1130167	.	-	0	transcript_id "Ledus.S2G013100.t1"; gene_id "Ledus.S2G013100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3232.t1 is derived from g667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7028405	7032106	.	-	.	Ledus.S1G065300
Ledus.S1	AUGUSTUS	transcript	7028405	7032106	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	stop_codon	7028402	7028404	.	-	0	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	CDS	7028405	7028733	0.97	-	2	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	exon	7028405	7028733	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	intron	7028734	7028811	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	CDS	7028812	7029073	1	-	0	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	exon	7028812	7029073	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	intron	7029074	7029158	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	CDS	7029159	7029374	1	-	0	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	exon	7029159	7029374	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	intron	7029375	7029450	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	CDS	7029451	7029701	0.72	-	2	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	exon	7029451	7029701	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	intron	7029702	7029827	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	CDS	7029828	7030079	0.95	-	2	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	exon	7029828	7030079	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	intron	7030080	7030157	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	CDS	7030158	7030466	0.94	-	2	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	exon	7030158	7030466	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	intron	7030467	7030580	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	CDS	7030581	7030796	0.86	-	2	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	exon	7030581	7030796	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	intron	7030797	7030970	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	CDS	7030971	7031214	1	-	0	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	exon	7030971	7031214	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	intron	7031215	7031299	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	CDS	7031300	7032106	0.93	-	0	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	exon	7031300	7032106	.	-	.	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
Ledus.S1	AUGUSTUS	start_codon	7032104	7032106	.	-	0	transcript_id "Ledus.S1G065300.t1"; gene_id "Ledus.S1G065300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10611.t1 is derived from g11641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16450169	16450894	.	-	.	Ledus.S3G208800
Ledus.S3	AUGUSTUS	transcript	16450169	16450894	.	-	.	transcript_id "Ledus.S3G208800.t1"; gene_id "Ledus.S3G208800"
Ledus.S3	AUGUSTUS	stop_codon	16450166	16450168	.	-	0	transcript_id "Ledus.S3G208800.t1"; gene_id "Ledus.S3G208800"
Ledus.S3	AUGUSTUS	CDS	16450169	16450381	0.81	-	0	transcript_id "Ledus.S3G208800.t1"; gene_id "Ledus.S3G208800"
Ledus.S3	AUGUSTUS	exon	16450169	16450381	.	-	.	transcript_id "Ledus.S3G208800.t1"; gene_id "Ledus.S3G208800"
Ledus.S3	AUGUSTUS	intron	16450382	16450491	.	-	.	transcript_id "Ledus.S3G208800.t1"; gene_id "Ledus.S3G208800"
Ledus.S3	AUGUSTUS	CDS	16450492	16450572	0.97	-	0	transcript_id "Ledus.S3G208800.t1"; gene_id "Ledus.S3G208800"
Ledus.S3	AUGUSTUS	exon	16450492	16450572	.	-	.	transcript_id "Ledus.S3G208800.t1"; gene_id "Ledus.S3G208800"
Ledus.S3	AUGUSTUS	intron	16450573	16450663	.	-	.	transcript_id "Ledus.S3G208800.t1"; gene_id "Ledus.S3G208800"
Ledus.S3	AUGUSTUS	CDS	16450664	16450894	0.98	-	0	transcript_id "Ledus.S3G208800.t1"; gene_id "Ledus.S3G208800"
Ledus.S3	AUGUSTUS	exon	16450664	16450894	.	-	.	transcript_id "Ledus.S3G208800.t1"; gene_id "Ledus.S3G208800"
Ledus.S3	AUGUSTUS	start_codon	16450892	16450894	.	-	0	transcript_id "Ledus.S3G208800.t1"; gene_id "Ledus.S3G208800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9074.t1 is derived from g10104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4368074	4369456	.	+	.	Ledus.S3G055100
Ledus.S3	AUGUSTUS	transcript	4368074	4369456	.	+	.	transcript_id "Ledus.S3G055100.t1"; gene_id "Ledus.S3G055100"
Ledus.S3	AUGUSTUS	start_codon	4368074	4368076	.	+	0	transcript_id "Ledus.S3G055100.t1"; gene_id "Ledus.S3G055100"
Ledus.S3	AUGUSTUS	CDS	4368074	4369456	0.93	+	0	transcript_id "Ledus.S3G055100.t1"; gene_id "Ledus.S3G055100"
Ledus.S3	AUGUSTUS	exon	4368074	4369456	.	+	.	transcript_id "Ledus.S3G055100.t1"; gene_id "Ledus.S3G055100"
Ledus.S3	AUGUSTUS	stop_codon	4369457	4369459	.	+	0	transcript_id "Ledus.S3G055100.t1"; gene_id "Ledus.S3G055100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9177.t1 is derived from g10207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5254594	5255938	.	-	.	Ledus.S3G065400
Ledus.S3	AUGUSTUS	transcript	5254594	5255938	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	stop_codon	5254591	5254593	.	-	0	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	CDS	5254594	5254675	0.98	-	1	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	exon	5254594	5254675	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	intron	5254676	5254756	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	CDS	5254757	5254801	1	-	1	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	exon	5254757	5254801	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	intron	5254802	5254885	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	CDS	5254886	5254935	1	-	0	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	exon	5254886	5254935	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	intron	5254936	5255102	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	CDS	5255103	5255311	0.52	-	2	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	exon	5255103	5255311	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	intron	5255312	5255449	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	CDS	5255450	5255543	0.43	-	0	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	exon	5255450	5255543	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	intron	5255544	5255733	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	CDS	5255734	5255783	0.84	-	2	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	exon	5255734	5255783	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	intron	5255784	5255853	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	CDS	5255854	5255938	0.46	-	0	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	exon	5255854	5255938	.	-	.	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
Ledus.S3	AUGUSTUS	start_codon	5255936	5255938	.	-	0	transcript_id "Ledus.S3G065400.t1"; gene_id "Ledus.S3G065400"
# This transcript jg8964.t2 is derived from g9994.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8965.t1 is derived from g9995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3565127	3568183	.	+	.	Ledus.S3G044200
Ledus.S3	AUGUSTUS	transcript	3565127	3568183	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	start_codon	3565127	3565129	.	+	0	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	CDS	3565127	3565153	0.49	+	0	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	exon	3565127	3565153	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	intron	3565154	3565263	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	CDS	3565264	3565921	0.54	+	0	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	exon	3565264	3565921	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	intron	3565922	3565996	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	CDS	3565997	3566166	0.99	+	2	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	exon	3565997	3566166	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	intron	3566167	3566247	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	CDS	3566248	3566363	1	+	0	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	exon	3566248	3566363	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	intron	3566364	3566445	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	CDS	3566446	3566527	1	+	1	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	exon	3566446	3566527	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	intron	3566528	3566812	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	CDS	3566813	3566870	1	+	0	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	exon	3566813	3566870	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	intron	3566871	3567232	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	CDS	3567233	3567330	1	+	2	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	exon	3567233	3567330	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	intron	3567331	3567423	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	CDS	3567424	3567519	0.86	+	0	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	exon	3567424	3567519	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	intron	3567520	3567626	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	CDS	3567627	3567697	1	+	0	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	exon	3567627	3567697	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	intron	3567698	3567796	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	CDS	3567797	3567867	1	+	1	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	exon	3567797	3567867	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	intron	3567868	3568133	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	CDS	3568134	3568183	1	+	2	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	exon	3568134	3568183	.	+	.	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
Ledus.S3	AUGUSTUS	stop_codon	3568184	3568186	.	+	0	transcript_id "Ledus.S3G044200.t1"; gene_id "Ledus.S3G044200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg411.t1 is derived from g7272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2271978	2272349	.	-	.	Ledus.S2G029300
Ledus.S2	AUGUSTUS	transcript	2271978	2272349	.	-	.	transcript_id "Ledus.S2G029300.t1"; gene_id "Ledus.S2G029300"
Ledus.S2	AUGUSTUS	stop_codon	2271975	2271977	.	-	0	transcript_id "Ledus.S2G029300.t1"; gene_id "Ledus.S2G029300"
Ledus.S2	AUGUSTUS	CDS	2271978	2272349	0.99	-	0	transcript_id "Ledus.S2G029300.t1"; gene_id "Ledus.S2G029300"
Ledus.S2	AUGUSTUS	exon	2271978	2272349	.	-	.	transcript_id "Ledus.S2G029300.t1"; gene_id "Ledus.S2G029300"
Ledus.S2	AUGUSTUS	start_codon	2272347	2272349	.	-	0	transcript_id "Ledus.S2G029300.t1"; gene_id "Ledus.S2G029300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6487.t1 is derived from g3930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31590366	31594404	.	-	.	Ledus.S1G390800
Ledus.S1	AUGUSTUS	transcript	31590366	31594404	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	stop_codon	31590363	31590365	.	-	0	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	CDS	31590366	31592111	1	-	0	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	exon	31590366	31592111	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	intron	31592112	31592178	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	CDS	31592179	31592448	1	-	0	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	exon	31592179	31592448	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	intron	31592449	31592545	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	CDS	31592546	31592655	0.43	-	2	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	exon	31592546	31592655	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	intron	31592656	31592892	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	CDS	31592893	31592935	0.55	-	0	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	exon	31592893	31592935	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	intron	31592936	31593015	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	CDS	31593016	31593123	1	-	0	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	exon	31593016	31593123	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	intron	31593124	31593223	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	CDS	31593224	31593306	1	-	2	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	exon	31593224	31593306	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	intron	31593307	31593407	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	CDS	31593408	31593468	1	-	0	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	exon	31593408	31593468	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	intron	31593469	31593546	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	CDS	31593547	31593566	1	-	2	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	exon	31593547	31593566	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	intron	31593567	31593685	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	CDS	31593686	31593767	1	-	0	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	exon	31593686	31593767	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	intron	31593768	31593860	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	CDS	31593861	31593959	1	-	0	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	exon	31593861	31593959	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	intron	31593960	31594050	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	CDS	31594051	31594404	0.99	-	0	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	exon	31594051	31594404	.	-	.	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
Ledus.S1	AUGUSTUS	start_codon	31594402	31594404	.	-	0	transcript_id "Ledus.S1G390800.t1"; gene_id "Ledus.S1G390800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7799.t1 is derived from g12470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6851739	6855441	.	+	.	Ledus.S5G057700
Ledus.S5	AUGUSTUS	transcript	6851739	6855441	.	+	.	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	start_codon	6851739	6851741	.	+	0	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	CDS	6851739	6853118	0.97	+	0	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	exon	6851739	6853118	.	+	.	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	intron	6853119	6853326	.	+	.	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	CDS	6853327	6853494	1	+	0	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	exon	6853327	6853494	.	+	.	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	intron	6853495	6853642	.	+	.	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	CDS	6853643	6854322	1	+	0	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	exon	6853643	6854322	.	+	.	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	intron	6854323	6854459	.	+	.	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	CDS	6854460	6854742	1	+	1	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	exon	6854460	6854742	.	+	.	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	intron	6854743	6854830	.	+	.	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	CDS	6854831	6855120	1	+	0	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	exon	6854831	6855120	.	+	.	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	intron	6855121	6855251	.	+	.	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	CDS	6855252	6855441	1	+	1	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	exon	6855252	6855441	.	+	.	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
Ledus.S5	AUGUSTUS	stop_codon	6855442	6855444	.	+	0	transcript_id "Ledus.S5G057700.t1"; gene_id "Ledus.S5G057700"
# This transcript jg2631.t2 is derived from g64.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2632.t1 is derived from g65.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	948470	949779	.	-	.	Ledus.S1G005300
Ledus.S1	AUGUSTUS	transcript	948470	949779	.	-	.	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	stop_codon	948467	948469	.	-	0	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	CDS	948470	948916	0.9	-	0	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	exon	948470	948916	.	-	.	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	intron	948917	949006	.	-	.	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	CDS	949007	949065	1	-	2	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	exon	949007	949065	.	-	.	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	intron	949066	949190	.	-	.	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	CDS	949191	949272	0.96	-	0	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	exon	949191	949272	.	-	.	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	intron	949273	949347	.	-	.	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	CDS	949348	949482	1	-	0	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	exon	949348	949482	.	-	.	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	intron	949483	949566	.	-	.	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	CDS	949567	949779	0.99	-	0	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	exon	949567	949779	.	-	.	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
Ledus.S1	AUGUSTUS	start_codon	949777	949779	.	-	0	transcript_id "Ledus.S1G005300.t1"; gene_id "Ledus.S1G005300"
# This transcript jg6551.t2 is derived from g3994.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6551.t3 is derived from g3994.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6552.t1 is derived from g3995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32268893	32271729	.	+	.	Ledus.S1G397300
Ledus.S1	AUGUSTUS	transcript	32268893	32271729	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	start_codon	32268893	32268895	.	+	0	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32268893	32268938	0.2	+	0	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32268893	32268938	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32268939	32269014	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32269015	32269119	0.34	+	2	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32269015	32269119	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32269120	32269212	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32269213	32269329	1	+	2	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32269213	32269329	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32269330	32269427	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32269428	32269481	1	+	2	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32269428	32269481	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32269482	32269591	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32269592	32269793	0.99	+	2	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32269592	32269793	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32269794	32269884	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32269885	32269944	1	+	1	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32269885	32269944	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32269945	32270060	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32270061	32270322	1	+	1	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32270061	32270322	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32270323	32270407	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32270408	32270538	1	+	0	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32270408	32270538	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32270539	32270637	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32270638	32270736	0.99	+	1	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32270638	32270736	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32270737	32270853	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32270854	32270902	0.92	+	1	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32270854	32270902	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32270903	32270994	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32270995	32271172	0.99	+	0	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32270995	32271172	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32271173	32271256	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32271257	32271315	1	+	2	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32271257	32271315	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32271316	32271401	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32271402	32271551	1	+	0	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32271402	32271551	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32271552	32271639	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32271640	32271729	1	+	0	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32271640	32271729	.	+	.	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	stop_codon	32271730	32271732	.	+	0	transcript_id "Ledus.S1G397300.t1"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	transcript	32268893	32271729	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	start_codon	32268893	32268895	.	+	0	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32268893	32268938	0.26	+	0	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32268893	32268938	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32268939	32269014	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32269015	32269119	0.39	+	2	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32269015	32269119	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32269120	32269212	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32269213	32269329	1	+	2	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32269213	32269329	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32269330	32269427	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32269428	32269481	1	+	2	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32269428	32269481	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32269482	32269591	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32269592	32269793	1	+	2	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32269592	32269793	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32269794	32269884	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32269885	32269944	1	+	1	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32269885	32269944	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32269945	32270060	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32270061	32270322	1	+	1	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32270061	32270322	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32270323	32270407	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32270408	32270538	1	+	0	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32270408	32270538	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32270539	32270637	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32270638	32270736	0.99	+	1	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32270638	32270736	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32270737	32270994	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32270995	32271056	0.54	+	1	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32270995	32271056	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32271057	32271106	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32271107	32271172	0.54	+	2	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32271107	32271172	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32271173	32271256	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32271257	32271315	1	+	2	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32271257	32271315	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32271316	32271401	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32271402	32271551	1	+	0	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32271402	32271551	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	intron	32271552	32271639	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	CDS	32271640	32271729	1	+	0	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	exon	32271640	32271729	.	+	.	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
Ledus.S1	AUGUSTUS	stop_codon	32271730	32271732	.	+	0	transcript_id "Ledus.S1G397300.t2"; gene_id "Ledus.S1G397300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1773.t1 is derived from g8636.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12430777	12431908	.	-	.	Ledus.S2G165500
Ledus.S2	AUGUSTUS	transcript	12430777	12431908	.	-	.	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	stop_codon	12430774	12430776	.	-	0	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	CDS	12430777	12431112	0.89	-	0	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	exon	12430777	12431112	.	-	.	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	intron	12431113	12431224	.	-	.	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	CDS	12431225	12431387	1	-	1	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	exon	12431225	12431387	.	-	.	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	intron	12431388	12431479	.	-	.	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	CDS	12431480	12431583	1	-	0	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	exon	12431480	12431583	.	-	.	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	intron	12431584	12431671	.	-	.	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	CDS	12431672	12431908	0.49	-	0	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	exon	12431672	12431908	.	-	.	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
Ledus.S2	AUGUSTUS	start_codon	12431906	12431908	.	-	0	transcript_id "Ledus.S2G165500.t1"; gene_id "Ledus.S2G165500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6310.t1 is derived from g3753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30437258	30442302	.	+	.	Ledus.S1G373100
Ledus.S1	AUGUSTUS	transcript	30437258	30442302	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	start_codon	30437258	30437260	.	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30437258	30437269	0.98	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30437258	30437269	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30437270	30437610	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30437611	30437639	1	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30437611	30437639	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30437640	30437797	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30437798	30437814	0.92	+	1	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30437798	30437814	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30437815	30437929	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30437930	30439068	0.85	+	2	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30437930	30439068	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30439069	30439194	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30439195	30439317	1	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30439195	30439317	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30439318	30439539	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30439540	30439613	1	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30439540	30439613	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30439614	30439688	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30439689	30439749	1	+	1	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30439689	30439749	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30439750	30439932	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30439933	30440079	0.98	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30439933	30440079	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30440080	30440200	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30440201	30440286	0.98	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30440201	30440286	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30440287	30440402	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30440403	30440472	1	+	1	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30440403	30440472	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30440473	30440653	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30440654	30440806	1	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30440654	30440806	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30440807	30440937	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30440938	30441183	1	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30440938	30441183	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30441184	30441303	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30441304	30441408	1	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30441304	30441408	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30441409	30441541	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30441542	30441634	1	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30441542	30441634	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30441635	30441725	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30441726	30441785	1	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30441726	30441785	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30441786	30441893	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30441894	30441982	1	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30441894	30441982	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30441983	30442068	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30442069	30442149	1	+	1	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30442069	30442149	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	intron	30442150	30442232	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	CDS	30442233	30442302	1	+	1	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	exon	30442233	30442302	.	+	.	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
Ledus.S1	AUGUSTUS	stop_codon	30442303	30442305	.	+	0	transcript_id "Ledus.S1G373100.t1"; gene_id "Ledus.S1G373100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3573.t1 is derived from g1009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9718265	9718612	.	-	.	Ledus.S1G099400
Ledus.S1	AUGUSTUS	transcript	9718265	9718612	.	-	.	transcript_id "Ledus.S1G099400.t1"; gene_id "Ledus.S1G099400"
Ledus.S1	AUGUSTUS	stop_codon	9718262	9718264	.	-	0	transcript_id "Ledus.S1G099400.t1"; gene_id "Ledus.S1G099400"
Ledus.S1	AUGUSTUS	CDS	9718265	9718612	0.35	-	0	transcript_id "Ledus.S1G099400.t1"; gene_id "Ledus.S1G099400"
Ledus.S1	AUGUSTUS	exon	9718265	9718612	.	-	.	transcript_id "Ledus.S1G099400.t1"; gene_id "Ledus.S1G099400"
Ledus.S1	AUGUSTUS	start_codon	9718610	9718612	.	-	0	transcript_id "Ledus.S1G099400.t1"; gene_id "Ledus.S1G099400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg376.t1 is derived from g7237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2022096	2022579	.	-	.	Ledus.S2G025800
Ledus.S2	AUGUSTUS	transcript	2022096	2022579	.	-	.	transcript_id "Ledus.S2G025800.t1"; gene_id "Ledus.S2G025800"
Ledus.S2	AUGUSTUS	stop_codon	2022093	2022095	.	-	0	transcript_id "Ledus.S2G025800.t1"; gene_id "Ledus.S2G025800"
Ledus.S2	AUGUSTUS	CDS	2022096	2022372	0.32	-	1	transcript_id "Ledus.S2G025800.t1"; gene_id "Ledus.S2G025800"
Ledus.S2	AUGUSTUS	exon	2022096	2022372	.	-	.	transcript_id "Ledus.S2G025800.t1"; gene_id "Ledus.S2G025800"
Ledus.S2	AUGUSTUS	intron	2022373	2022499	.	-	.	transcript_id "Ledus.S2G025800.t1"; gene_id "Ledus.S2G025800"
Ledus.S2	AUGUSTUS	CDS	2022500	2022579	0.28	-	0	transcript_id "Ledus.S2G025800.t1"; gene_id "Ledus.S2G025800"
Ledus.S2	AUGUSTUS	exon	2022500	2022579	.	-	.	transcript_id "Ledus.S2G025800.t1"; gene_id "Ledus.S2G025800"
Ledus.S2	AUGUSTUS	start_codon	2022577	2022579	.	-	0	transcript_id "Ledus.S2G025800.t1"; gene_id "Ledus.S2G025800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11718.t1 is derived from g5337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6232216	6232464	.	-	.	Ledus.S4G087400
Ledus.S4	AUGUSTUS	transcript	6232216	6232464	.	-	.	transcript_id "Ledus.S4G087400.t1"; gene_id "Ledus.S4G087400"
Ledus.S4	AUGUSTUS	stop_codon	6232213	6232215	.	-	0	transcript_id "Ledus.S4G087400.t1"; gene_id "Ledus.S4G087400"
Ledus.S4	AUGUSTUS	CDS	6232216	6232464	0.79	-	0	transcript_id "Ledus.S4G087400.t1"; gene_id "Ledus.S4G087400"
Ledus.S4	AUGUSTUS	exon	6232216	6232464	.	-	.	transcript_id "Ledus.S4G087400.t1"; gene_id "Ledus.S4G087400"
Ledus.S4	AUGUSTUS	start_codon	6232462	6232464	.	-	0	transcript_id "Ledus.S4G087400.t1"; gene_id "Ledus.S4G087400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2214.t1 is derived from g9077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16093834	16094115	.	+	.	Ledus.S2G209600
Ledus.S2	AUGUSTUS	transcript	16093834	16094115	.	+	.	transcript_id "Ledus.S2G209600.t1"; gene_id "Ledus.S2G209600"
Ledus.S2	AUGUSTUS	start_codon	16093834	16093836	.	+	0	transcript_id "Ledus.S2G209600.t1"; gene_id "Ledus.S2G209600"
Ledus.S2	AUGUSTUS	CDS	16093834	16094115	0.45	+	0	transcript_id "Ledus.S2G209600.t1"; gene_id "Ledus.S2G209600"
Ledus.S2	AUGUSTUS	exon	16093834	16094115	.	+	.	transcript_id "Ledus.S2G209600.t1"; gene_id "Ledus.S2G209600"
Ledus.S2	AUGUSTUS	stop_codon	16094116	16094118	.	+	0	transcript_id "Ledus.S2G209600.t1"; gene_id "Ledus.S2G209600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10270.t1 is derived from g11300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13920768	13922166	.	+	.	Ledus.S3G174700
Ledus.S3	AUGUSTUS	transcript	13920768	13922166	.	+	.	transcript_id "Ledus.S3G174700.t1"; gene_id "Ledus.S3G174700"
Ledus.S3	AUGUSTUS	start_codon	13920768	13920770	.	+	0	transcript_id "Ledus.S3G174700.t1"; gene_id "Ledus.S3G174700"
Ledus.S3	AUGUSTUS	CDS	13920768	13921895	0.38	+	0	transcript_id "Ledus.S3G174700.t1"; gene_id "Ledus.S3G174700"
Ledus.S3	AUGUSTUS	exon	13920768	13921895	.	+	.	transcript_id "Ledus.S3G174700.t1"; gene_id "Ledus.S3G174700"
Ledus.S3	AUGUSTUS	intron	13921896	13921998	.	+	.	transcript_id "Ledus.S3G174700.t1"; gene_id "Ledus.S3G174700"
Ledus.S3	AUGUSTUS	CDS	13921999	13922005	0.96	+	0	transcript_id "Ledus.S3G174700.t1"; gene_id "Ledus.S3G174700"
Ledus.S3	AUGUSTUS	exon	13921999	13922005	.	+	.	transcript_id "Ledus.S3G174700.t1"; gene_id "Ledus.S3G174700"
Ledus.S3	AUGUSTUS	intron	13922006	13922152	.	+	.	transcript_id "Ledus.S3G174700.t1"; gene_id "Ledus.S3G174700"
Ledus.S3	AUGUSTUS	CDS	13922153	13922166	0.81	+	2	transcript_id "Ledus.S3G174700.t1"; gene_id "Ledus.S3G174700"
Ledus.S3	AUGUSTUS	exon	13922153	13922166	.	+	.	transcript_id "Ledus.S3G174700.t1"; gene_id "Ledus.S3G174700"
Ledus.S3	AUGUSTUS	stop_codon	13922167	13922169	.	+	0	transcript_id "Ledus.S3G174700.t1"; gene_id "Ledus.S3G174700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1775.t1 is derived from g8638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12434780	12438075	.	+	.	Ledus.S2G165700
Ledus.S2	AUGUSTUS	transcript	12434780	12438075	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	start_codon	12434780	12434782	.	+	0	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	CDS	12434780	12434912	0.98	+	0	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	exon	12434780	12434912	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	intron	12434913	12435063	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	CDS	12435064	12435158	1	+	2	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	exon	12435064	12435158	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	intron	12435159	12435376	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	CDS	12435377	12435722	1	+	0	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	exon	12435377	12435722	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	intron	12435723	12435816	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	CDS	12435817	12436063	1	+	2	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	exon	12435817	12436063	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	intron	12436064	12436204	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	CDS	12436205	12436499	0.96	+	1	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	exon	12436205	12436499	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	intron	12436500	12436626	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	CDS	12436627	12437001	1	+	0	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	exon	12436627	12437001	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	intron	12437002	12437151	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	CDS	12437152	12438075	1	+	0	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	exon	12437152	12438075	.	+	.	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
Ledus.S2	AUGUSTUS	stop_codon	12438076	12438078	.	+	0	transcript_id "Ledus.S2G165700.t1"; gene_id "Ledus.S2G165700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7892.t1 is derived from g12563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7703622	7705522	.	-	.	Ledus.S5G067000
Ledus.S5	AUGUSTUS	transcript	7703622	7705522	.	-	.	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	stop_codon	7703619	7703621	.	-	0	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	CDS	7703622	7703837	1	-	0	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	exon	7703622	7703837	.	-	.	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	intron	7703838	7703977	.	-	.	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	CDS	7703978	7704083	1	-	1	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	exon	7703978	7704083	.	-	.	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	intron	7704084	7704208	.	-	.	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	CDS	7704209	7704437	0.94	-	2	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	exon	7704209	7704437	.	-	.	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	intron	7704438	7704510	.	-	.	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	CDS	7704511	7704530	0.97	-	1	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	exon	7704511	7704530	.	-	.	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	intron	7704531	7705463	.	-	.	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	CDS	7705464	7705522	0.6	-	0	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	exon	7705464	7705522	.	-	.	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
Ledus.S5	AUGUSTUS	start_codon	7705520	7705522	.	-	0	transcript_id "Ledus.S5G067000.t1"; gene_id "Ledus.S5G067000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13055.t1 is derived from g6865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4252771	4253629	.	-	.	Ledus.S6G011700
Ledus.S6	AUGUSTUS	transcript	4252771	4253629	.	-	.	transcript_id "Ledus.S6G011700.t1"; gene_id "Ledus.S6G011700"
Ledus.S6	AUGUSTUS	stop_codon	4252768	4252770	.	-	0	transcript_id "Ledus.S6G011700.t1"; gene_id "Ledus.S6G011700"
Ledus.S6	AUGUSTUS	CDS	4252771	4253053	0.29	-	1	transcript_id "Ledus.S6G011700.t1"; gene_id "Ledus.S6G011700"
Ledus.S6	AUGUSTUS	exon	4252771	4253053	.	-	.	transcript_id "Ledus.S6G011700.t1"; gene_id "Ledus.S6G011700"
Ledus.S6	AUGUSTUS	intron	4253054	4253145	.	-	.	transcript_id "Ledus.S6G011700.t1"; gene_id "Ledus.S6G011700"
Ledus.S6	AUGUSTUS	CDS	4253146	4253420	1	-	0	transcript_id "Ledus.S6G011700.t1"; gene_id "Ledus.S6G011700"
Ledus.S6	AUGUSTUS	exon	4253146	4253420	.	-	.	transcript_id "Ledus.S6G011700.t1"; gene_id "Ledus.S6G011700"
Ledus.S6	AUGUSTUS	intron	4253421	4253503	.	-	.	transcript_id "Ledus.S6G011700.t1"; gene_id "Ledus.S6G011700"
Ledus.S6	AUGUSTUS	CDS	4253504	4253629	1	-	0	transcript_id "Ledus.S6G011700.t1"; gene_id "Ledus.S6G011700"
Ledus.S6	AUGUSTUS	exon	4253504	4253629	.	-	.	transcript_id "Ledus.S6G011700.t1"; gene_id "Ledus.S6G011700"
Ledus.S6	AUGUSTUS	start_codon	4253627	4253629	.	-	0	transcript_id "Ledus.S6G011700.t1"; gene_id "Ledus.S6G011700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9403.t1 is derived from g10433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6578398	6581865	.	+	.	Ledus.S3G088000
Ledus.S3	AUGUSTUS	transcript	6578398	6581865	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	start_codon	6578398	6578400	.	+	0	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	CDS	6578398	6578553	0.76	+	0	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	exon	6578398	6578553	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	intron	6578554	6578989	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	CDS	6578990	6579085	1	+	0	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	exon	6578990	6579085	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	intron	6579086	6579176	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	CDS	6579177	6579382	0.98	+	0	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	exon	6579177	6579382	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	intron	6579383	6579485	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	CDS	6579486	6579707	0.98	+	1	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	exon	6579486	6579707	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	intron	6579708	6579809	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	CDS	6579810	6579948	0.99	+	1	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	exon	6579810	6579948	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	intron	6579949	6580054	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	CDS	6580055	6580267	1	+	0	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	exon	6580055	6580267	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	intron	6580268	6580356	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	CDS	6580357	6580562	1	+	0	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	exon	6580357	6580562	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	intron	6580563	6580742	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	CDS	6580743	6580943	1	+	1	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	exon	6580743	6580943	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	intron	6580944	6581085	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	CDS	6581086	6581185	1	+	1	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	exon	6581086	6581185	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	intron	6581186	6581273	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	CDS	6581274	6581392	1	+	0	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	exon	6581274	6581392	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	intron	6581393	6581483	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	CDS	6581484	6581630	1	+	1	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	exon	6581484	6581630	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	intron	6581631	6581750	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	CDS	6581751	6581865	1	+	1	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	exon	6581751	6581865	.	+	.	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
Ledus.S3	AUGUSTUS	stop_codon	6581866	6581868	.	+	0	transcript_id "Ledus.S3G088000.t1"; gene_id "Ledus.S3G088000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4267.t1 is derived from g1703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15828968	15829327	.	+	.	Ledus.S1G168800
Ledus.S1	AUGUSTUS	transcript	15828968	15829327	.	+	.	transcript_id "Ledus.S1G168800.t1"; gene_id "Ledus.S1G168800"
Ledus.S1	AUGUSTUS	start_codon	15828968	15828970	.	+	0	transcript_id "Ledus.S1G168800.t1"; gene_id "Ledus.S1G168800"
Ledus.S1	AUGUSTUS	CDS	15828968	15829327	0.82	+	0	transcript_id "Ledus.S1G168800.t1"; gene_id "Ledus.S1G168800"
Ledus.S1	AUGUSTUS	exon	15828968	15829327	.	+	.	transcript_id "Ledus.S1G168800.t1"; gene_id "Ledus.S1G168800"
Ledus.S1	AUGUSTUS	stop_codon	15829328	15829330	.	+	0	transcript_id "Ledus.S1G168800.t1"; gene_id "Ledus.S1G168800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6465.t1 is derived from g3908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31390504	31390710	.	+	.	Ledus.S1G388600
Ledus.S1	AUGUSTUS	transcript	31390504	31390710	.	+	.	transcript_id "Ledus.S1G388600.t1"; gene_id "Ledus.S1G388600"
Ledus.S1	AUGUSTUS	start_codon	31390504	31390506	.	+	0	transcript_id "Ledus.S1G388600.t1"; gene_id "Ledus.S1G388600"
Ledus.S1	AUGUSTUS	CDS	31390504	31390710	0.82	+	0	transcript_id "Ledus.S1G388600.t1"; gene_id "Ledus.S1G388600"
Ledus.S1	AUGUSTUS	exon	31390504	31390710	.	+	.	transcript_id "Ledus.S1G388600.t1"; gene_id "Ledus.S1G388600"
Ledus.S1	AUGUSTUS	stop_codon	31390711	31390713	.	+	0	transcript_id "Ledus.S1G388600.t1"; gene_id "Ledus.S1G388600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5711.t1 is derived from g3150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26122403	26125941	.	+	.	Ledus.S1G313200
Ledus.S1	AUGUSTUS	transcript	26122403	26125941	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	start_codon	26122403	26122405	.	+	0	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26122403	26122874	0.79	+	0	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26122403	26122874	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	intron	26122875	26123153	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26123154	26123320	1	+	2	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26123154	26123320	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	intron	26123321	26123459	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26123460	26123525	1	+	0	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26123460	26123525	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	intron	26123526	26123612	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26123613	26123665	1	+	0	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26123613	26123665	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	intron	26123666	26123772	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26123773	26123854	1	+	1	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26123773	26123854	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	intron	26123855	26123955	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26123956	26124017	1	+	0	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26123956	26124017	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	intron	26124018	26124155	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26124156	26124246	1	+	1	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26124156	26124246	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	intron	26124247	26124394	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26124395	26124487	1	+	0	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26124395	26124487	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	intron	26124488	26124577	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26124578	26124610	0.89	+	0	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26124578	26124610	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	intron	26124611	26124719	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26124720	26124826	1	+	0	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26124720	26124826	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	intron	26124827	26124945	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26124946	26125342	1	+	1	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26124946	26125342	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	intron	26125343	26125458	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26125459	26125731	0.63	+	0	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26125459	26125731	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	intron	26125732	26125815	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	CDS	26125816	26125941	0.98	+	0	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	exon	26125816	26125941	.	+	.	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
Ledus.S1	AUGUSTUS	stop_codon	26125942	26125944	.	+	0	transcript_id "Ledus.S1G313200.t1"; gene_id "Ledus.S1G313200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11803.t1 is derived from g5422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6861341	6861717	.	-	.	Ledus.S4G095900
Ledus.S4	AUGUSTUS	transcript	6861341	6861717	.	-	.	transcript_id "Ledus.S4G095900.t1"; gene_id "Ledus.S4G095900"
Ledus.S4	AUGUSTUS	stop_codon	6861338	6861340	.	-	0	transcript_id "Ledus.S4G095900.t1"; gene_id "Ledus.S4G095900"
Ledus.S4	AUGUSTUS	CDS	6861341	6861346	0.45	-	0	transcript_id "Ledus.S4G095900.t1"; gene_id "Ledus.S4G095900"
Ledus.S4	AUGUSTUS	exon	6861341	6861346	.	-	.	transcript_id "Ledus.S4G095900.t1"; gene_id "Ledus.S4G095900"
Ledus.S4	AUGUSTUS	intron	6861347	6861480	.	-	.	transcript_id "Ledus.S4G095900.t1"; gene_id "Ledus.S4G095900"
Ledus.S4	AUGUSTUS	CDS	6861481	6861717	0.41	-	0	transcript_id "Ledus.S4G095900.t1"; gene_id "Ledus.S4G095900"
Ledus.S4	AUGUSTUS	exon	6861481	6861717	.	-	.	transcript_id "Ledus.S4G095900.t1"; gene_id "Ledus.S4G095900"
Ledus.S4	AUGUSTUS	start_codon	6861715	6861717	.	-	0	transcript_id "Ledus.S4G095900.t1"; gene_id "Ledus.S4G095900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg202.t1 is derived from g7063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	794839	796104	.	+	.	Ledus.S2G008400
Ledus.S2	AUGUSTUS	transcript	794839	796104	.	+	.	transcript_id "Ledus.S2G008400.t1"; gene_id "Ledus.S2G008400"
Ledus.S2	AUGUSTUS	start_codon	794839	794841	.	+	0	transcript_id "Ledus.S2G008400.t1"; gene_id "Ledus.S2G008400"
Ledus.S2	AUGUSTUS	CDS	794839	796104	0.55	+	0	transcript_id "Ledus.S2G008400.t1"; gene_id "Ledus.S2G008400"
Ledus.S2	AUGUSTUS	exon	794839	796104	.	+	.	transcript_id "Ledus.S2G008400.t1"; gene_id "Ledus.S2G008400"
Ledus.S2	AUGUSTUS	stop_codon	796105	796107	.	+	0	transcript_id "Ledus.S2G008400.t1"; gene_id "Ledus.S2G008400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3098.t1 is derived from g533.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5835167	5836318	.	+	.	Ledus.S1G051900
Ledus.S1	AUGUSTUS	transcript	5835167	5836318	.	+	.	transcript_id "Ledus.S1G051900.t1"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	start_codon	5835167	5835169	.	+	0	transcript_id "Ledus.S1G051900.t1"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	CDS	5835167	5835901	0.97	+	0	transcript_id "Ledus.S1G051900.t1"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	exon	5835167	5835901	.	+	.	transcript_id "Ledus.S1G051900.t1"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	intron	5835902	5835991	.	+	.	transcript_id "Ledus.S1G051900.t1"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	CDS	5835992	5836318	1	+	0	transcript_id "Ledus.S1G051900.t1"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	exon	5835992	5836318	.	+	.	transcript_id "Ledus.S1G051900.t1"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	stop_codon	5836319	5836321	.	+	0	transcript_id "Ledus.S1G051900.t1"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	transcript	5835167	5836318	.	+	.	transcript_id "Ledus.S1G051900.t2"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	start_codon	5835167	5835169	.	+	0	transcript_id "Ledus.S1G051900.t2"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	CDS	5835167	5835901	0.98	+	0	transcript_id "Ledus.S1G051900.t2"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	exon	5835167	5835901	.	+	.	transcript_id "Ledus.S1G051900.t2"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	intron	5835902	5835988	.	+	.	transcript_id "Ledus.S1G051900.t2"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	CDS	5835989	5836318	0.63	+	0	transcript_id "Ledus.S1G051900.t2"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	exon	5835989	5836318	.	+	.	transcript_id "Ledus.S1G051900.t2"; gene_id "Ledus.S1G051900"
Ledus.S1	AUGUSTUS	stop_codon	5836319	5836321	.	+	0	transcript_id "Ledus.S1G051900.t2"; gene_id "Ledus.S1G051900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11941.t1 is derived from g5560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7899212	7901508	.	+	.	Ledus.S4G109700
Ledus.S4	AUGUSTUS	transcript	7899212	7901508	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	start_codon	7899212	7899214	.	+	0	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	CDS	7899212	7899301	0.77	+	0	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	exon	7899212	7899301	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	intron	7899302	7899426	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	CDS	7899427	7899454	1	+	0	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	exon	7899427	7899454	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	intron	7899455	7899527	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	CDS	7899528	7899728	0.63	+	2	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	exon	7899528	7899728	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	intron	7899729	7899848	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	CDS	7899849	7899934	0.99	+	2	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	exon	7899849	7899934	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	intron	7899935	7900084	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	CDS	7900085	7900231	1	+	0	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	exon	7900085	7900231	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	intron	7900232	7900394	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	CDS	7900395	7900518	1	+	0	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	exon	7900395	7900518	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	intron	7900519	7900678	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	CDS	7900679	7900968	0.99	+	2	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	exon	7900679	7900968	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	intron	7900969	7901098	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	CDS	7901099	7901133	1	+	0	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	exon	7901099	7901133	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	intron	7901134	7901216	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	CDS	7901217	7901253	1	+	1	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	exon	7901217	7901253	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	intron	7901254	7901340	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	CDS	7901341	7901508	0.99	+	0	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	exon	7901341	7901508	.	+	.	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
Ledus.S4	AUGUSTUS	stop_codon	7901509	7901511	.	+	0	transcript_id "Ledus.S4G109700.t1"; gene_id "Ledus.S4G109700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10302.t1 is derived from g11332.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14155020	14156267	.	-	.	Ledus.S3G177900
Ledus.S3	AUGUSTUS	transcript	14155020	14156267	.	-	.	transcript_id "Ledus.S3G177900.t1"; gene_id "Ledus.S3G177900"
Ledus.S3	AUGUSTUS	stop_codon	14155017	14155019	.	-	0	transcript_id "Ledus.S3G177900.t1"; gene_id "Ledus.S3G177900"
Ledus.S3	AUGUSTUS	CDS	14155020	14156267	1	-	0	transcript_id "Ledus.S3G177900.t1"; gene_id "Ledus.S3G177900"
Ledus.S3	AUGUSTUS	exon	14155020	14156267	.	-	.	transcript_id "Ledus.S3G177900.t1"; gene_id "Ledus.S3G177900"
Ledus.S3	AUGUSTUS	start_codon	14156265	14156267	.	-	0	transcript_id "Ledus.S3G177900.t1"; gene_id "Ledus.S3G177900"
# This transcript jg10756.t2 is derived from g11787.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10757.t1 is derived from g11788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17508237	17509761	.	+	.	Ledus.S3G223400
Ledus.S3	AUGUSTUS	transcript	17508237	17509761	.	+	.	transcript_id "Ledus.S3G223400.t1"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	start_codon	17508237	17508239	.	+	0	transcript_id "Ledus.S3G223400.t1"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	CDS	17508237	17508615	0.73	+	0	transcript_id "Ledus.S3G223400.t1"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	exon	17508237	17508615	.	+	.	transcript_id "Ledus.S3G223400.t1"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	intron	17508616	17508697	.	+	.	transcript_id "Ledus.S3G223400.t1"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	CDS	17508698	17509568	0.99	+	2	transcript_id "Ledus.S3G223400.t1"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	exon	17508698	17509568	.	+	.	transcript_id "Ledus.S3G223400.t1"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	intron	17509569	17509661	.	+	.	transcript_id "Ledus.S3G223400.t1"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	CDS	17509662	17509761	1	+	1	transcript_id "Ledus.S3G223400.t1"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	exon	17509662	17509761	.	+	.	transcript_id "Ledus.S3G223400.t1"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	stop_codon	17509762	17509764	.	+	0	transcript_id "Ledus.S3G223400.t1"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	transcript	17508757	17509761	.	+	.	transcript_id "Ledus.S3G223400.t2"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	start_codon	17508757	17508759	.	+	0	transcript_id "Ledus.S3G223400.t2"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	CDS	17508757	17509568	0.79	+	0	transcript_id "Ledus.S3G223400.t2"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	exon	17508757	17509568	.	+	.	transcript_id "Ledus.S3G223400.t2"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	intron	17509569	17509661	.	+	.	transcript_id "Ledus.S3G223400.t2"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	CDS	17509662	17509761	1	+	1	transcript_id "Ledus.S3G223400.t2"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	exon	17509662	17509761	.	+	.	transcript_id "Ledus.S3G223400.t2"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	stop_codon	17509762	17509764	.	+	0	transcript_id "Ledus.S3G223400.t2"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	transcript	17508237	17508733	.	+	.	transcript_id "Ledus.S3G223400.t3"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	start_codon	17508237	17508239	.	+	0	transcript_id "Ledus.S3G223400.t3"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	CDS	17508237	17508602	0.79	+	0	transcript_id "Ledus.S3G223400.t3"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	exon	17508237	17508602	.	+	.	transcript_id "Ledus.S3G223400.t3"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	intron	17508603	17508697	.	+	.	transcript_id "Ledus.S3G223400.t3"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	CDS	17508698	17508733	0.89	+	0	transcript_id "Ledus.S3G223400.t3"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	exon	17508698	17508733	.	+	.	transcript_id "Ledus.S3G223400.t3"; gene_id "Ledus.S3G223400"
Ledus.S3	AUGUSTUS	stop_codon	17508734	17508736	.	+	0	transcript_id "Ledus.S3G223400.t3"; gene_id "Ledus.S3G223400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7269.t1 is derived from g11940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	654903	658202	.	+	.	Ledus.S5G004700
Ledus.S5	AUGUSTUS	transcript	654903	658202	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	start_codon	654903	654905	.	+	0	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	654903	654930	0.35	+	0	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	654903	654930	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	intron	654931	655158	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	655159	655317	0.37	+	2	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	655159	655317	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	intron	655318	655880	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	655881	655925	1	+	2	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	655881	655925	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	intron	655926	656214	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	656215	656249	0.73	+	2	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	656215	656249	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	intron	656250	656360	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	656361	656411	0.73	+	0	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	656361	656411	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	intron	656412	656587	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	656588	656692	1	+	0	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	656588	656692	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	intron	656693	656965	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	656966	657037	1	+	0	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	656966	657037	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	intron	657038	657127	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	657128	657199	1	+	0	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	657128	657199	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	intron	657200	657326	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	657327	657407	1	+	0	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	657327	657407	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	intron	657408	657572	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	657573	657608	1	+	0	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	657573	657608	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	intron	657609	657827	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	657828	657886	0.94	+	0	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	657828	657886	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	intron	657887	658026	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	658027	658089	0.93	+	1	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	658027	658089	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	intron	658090	658183	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	CDS	658184	658202	1	+	1	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	exon	658184	658202	.	+	.	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
Ledus.S5	AUGUSTUS	stop_codon	658203	658205	.	+	0	transcript_id "Ledus.S5G004700.t1"; gene_id "Ledus.S5G004700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4558.t1 is derived from g1995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17669396	17672628	.	-	.	Ledus.S1G197900
Ledus.S1	AUGUSTUS	transcript	17669396	17672628	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	stop_codon	17669393	17669395	.	-	0	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17669396	17669644	1	-	0	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17669396	17669644	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17669645	17669761	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17669762	17669857	1	-	0	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17669762	17669857	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17669858	17669929	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17669930	17670042	1	-	2	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17669930	17670042	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17670043	17670168	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17670169	17670229	1	-	0	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17670169	17670229	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17670230	17670349	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17670350	17670463	1	-	0	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17670350	17670463	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17670464	17670595	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17670596	17670655	1	-	0	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17670596	17670655	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17670656	17670798	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17670799	17670888	1	-	0	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17670799	17670888	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17670889	17671037	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17671038	17671110	1	-	1	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17671038	17671110	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17671111	17671241	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17671242	17671320	1	-	2	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17671242	17671320	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17671321	17671407	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17671408	17671454	1	-	1	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17671408	17671454	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17671455	17671619	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17671620	17671675	1	-	0	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17671620	17671675	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17671676	17671765	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17671766	17671866	1	-	2	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17671766	17671866	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17671867	17671945	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17671946	17672109	0.97	-	1	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17671946	17672109	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17672110	17672231	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17672232	17672300	0.84	-	1	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17672232	17672300	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	intron	17672301	17672401	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	CDS	17672402	17672628	0.43	-	0	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	exon	17672402	17672628	.	-	.	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
Ledus.S1	AUGUSTUS	start_codon	17672626	17672628	.	-	0	transcript_id "Ledus.S1G197900.t1"; gene_id "Ledus.S1G197900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5462.t1 is derived from g2901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24407796	24408951	.	-	.	Ledus.S1G288300
Ledus.S1	AUGUSTUS	transcript	24407796	24408951	.	-	.	transcript_id "Ledus.S1G288300.t1"; gene_id "Ledus.S1G288300"
Ledus.S1	AUGUSTUS	stop_codon	24407793	24407795	.	-	0	transcript_id "Ledus.S1G288300.t1"; gene_id "Ledus.S1G288300"
Ledus.S1	AUGUSTUS	CDS	24407796	24408168	1	-	1	transcript_id "Ledus.S1G288300.t1"; gene_id "Ledus.S1G288300"
Ledus.S1	AUGUSTUS	exon	24407796	24408168	.	-	.	transcript_id "Ledus.S1G288300.t1"; gene_id "Ledus.S1G288300"
Ledus.S1	AUGUSTUS	intron	24408169	24408248	.	-	.	transcript_id "Ledus.S1G288300.t1"; gene_id "Ledus.S1G288300"
Ledus.S1	AUGUSTUS	CDS	24408249	24408399	0.97	-	2	transcript_id "Ledus.S1G288300.t1"; gene_id "Ledus.S1G288300"
Ledus.S1	AUGUSTUS	exon	24408249	24408399	.	-	.	transcript_id "Ledus.S1G288300.t1"; gene_id "Ledus.S1G288300"
Ledus.S1	AUGUSTUS	intron	24408400	24408476	.	-	.	transcript_id "Ledus.S1G288300.t1"; gene_id "Ledus.S1G288300"
Ledus.S1	AUGUSTUS	CDS	24408477	24408951	0.79	-	0	transcript_id "Ledus.S1G288300.t1"; gene_id "Ledus.S1G288300"
Ledus.S1	AUGUSTUS	exon	24408477	24408951	.	-	.	transcript_id "Ledus.S1G288300.t1"; gene_id "Ledus.S1G288300"
Ledus.S1	AUGUSTUS	start_codon	24408949	24408951	.	-	0	transcript_id "Ledus.S1G288300.t1"; gene_id "Ledus.S1G288300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9032.t1 is derived from g10062.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3941474	3944663	.	+	.	Ledus.S3G050900
Ledus.S3	AUGUSTUS	transcript	3941474	3944663	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	start_codon	3941474	3941476	.	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3941474	3941530	0.77	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3941474	3941530	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3941531	3941694	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3941695	3941706	1	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3941695	3941706	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3941707	3941787	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3941788	3941836	1	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3941788	3941836	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3941837	3941915	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3941916	3941977	1	+	2	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3941916	3941977	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3941978	3942072	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3942073	3942140	1	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3942073	3942140	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3942141	3942290	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3942291	3942327	1	+	1	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3942291	3942327	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3942328	3942427	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3942428	3942515	1	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3942428	3942515	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3942516	3942690	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3942691	3942755	1	+	2	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3942691	3942755	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3942756	3942859	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3942860	3942937	1	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3942860	3942937	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3942938	3943139	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3943140	3943187	1	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3943140	3943187	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3943188	3943314	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3943315	3943368	1	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3943315	3943368	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3943369	3943560	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3943561	3943722	1	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3943561	3943722	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3943723	3943808	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3943809	3943878	1	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3943809	3943878	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3943879	3944030	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3944031	3944086	1	+	2	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3944031	3944086	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3944087	3944203	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3944204	3944315	0.92	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3944204	3944315	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	intron	3944316	3944583	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	CDS	3944584	3944663	0.45	+	2	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	exon	3944584	3944663	.	+	.	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
Ledus.S3	AUGUSTUS	stop_codon	3944664	3944666	.	+	0	transcript_id "Ledus.S3G050900.t1"; gene_id "Ledus.S3G050900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5125.t1 is derived from g2564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21863487	21864739	.	+	.	Ledus.S1G254600
Ledus.S1	AUGUSTUS	transcript	21863487	21864739	.	+	.	transcript_id "Ledus.S1G254600.t1"; gene_id "Ledus.S1G254600"
Ledus.S1	AUGUSTUS	start_codon	21863487	21863489	.	+	0	transcript_id "Ledus.S1G254600.t1"; gene_id "Ledus.S1G254600"
Ledus.S1	AUGUSTUS	CDS	21863487	21863526	0.47	+	0	transcript_id "Ledus.S1G254600.t1"; gene_id "Ledus.S1G254600"
Ledus.S1	AUGUSTUS	exon	21863487	21863526	.	+	.	transcript_id "Ledus.S1G254600.t1"; gene_id "Ledus.S1G254600"
Ledus.S1	AUGUSTUS	intron	21863527	21863729	.	+	.	transcript_id "Ledus.S1G254600.t1"; gene_id "Ledus.S1G254600"
Ledus.S1	AUGUSTUS	CDS	21863730	21863818	1	+	2	transcript_id "Ledus.S1G254600.t1"; gene_id "Ledus.S1G254600"
Ledus.S1	AUGUSTUS	exon	21863730	21863818	.	+	.	transcript_id "Ledus.S1G254600.t1"; gene_id "Ledus.S1G254600"
Ledus.S1	AUGUSTUS	intron	21863819	21863950	.	+	.	transcript_id "Ledus.S1G254600.t1"; gene_id "Ledus.S1G254600"
Ledus.S1	AUGUSTUS	CDS	21863951	21864739	0.84	+	0	transcript_id "Ledus.S1G254600.t1"; gene_id "Ledus.S1G254600"
Ledus.S1	AUGUSTUS	exon	21863951	21864739	.	+	.	transcript_id "Ledus.S1G254600.t1"; gene_id "Ledus.S1G254600"
Ledus.S1	AUGUSTUS	stop_codon	21864740	21864742	.	+	0	transcript_id "Ledus.S1G254600.t1"; gene_id "Ledus.S1G254600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9337.t1 is derived from g10367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6193585	6195496	.	+	.	Ledus.S3G081400
Ledus.S3	AUGUSTUS	transcript	6193585	6195496	.	+	.	transcript_id "Ledus.S3G081400.t1"; gene_id "Ledus.S3G081400"
Ledus.S3	AUGUSTUS	start_codon	6193585	6193587	.	+	0	transcript_id "Ledus.S3G081400.t1"; gene_id "Ledus.S3G081400"
Ledus.S3	AUGUSTUS	CDS	6193585	6194463	0.66	+	0	transcript_id "Ledus.S3G081400.t1"; gene_id "Ledus.S3G081400"
Ledus.S3	AUGUSTUS	exon	6193585	6194463	.	+	.	transcript_id "Ledus.S3G081400.t1"; gene_id "Ledus.S3G081400"
Ledus.S3	AUGUSTUS	intron	6194464	6194551	.	+	.	transcript_id "Ledus.S3G081400.t1"; gene_id "Ledus.S3G081400"
Ledus.S3	AUGUSTUS	CDS	6194552	6195496	0.96	+	0	transcript_id "Ledus.S3G081400.t1"; gene_id "Ledus.S3G081400"
Ledus.S3	AUGUSTUS	exon	6194552	6195496	.	+	.	transcript_id "Ledus.S3G081400.t1"; gene_id "Ledus.S3G081400"
Ledus.S3	AUGUSTUS	stop_codon	6195497	6195499	.	+	0	transcript_id "Ledus.S3G081400.t1"; gene_id "Ledus.S3G081400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8997.t1 is derived from g10027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3744742	3747286	.	+	.	Ledus.S3G047400
Ledus.S3	AUGUSTUS	transcript	3744742	3747286	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	start_codon	3744742	3744744	.	+	0	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	CDS	3744742	3745063	1	+	0	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	exon	3744742	3745063	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	intron	3745064	3745144	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	CDS	3745145	3745237	1	+	2	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	exon	3745145	3745237	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	intron	3745238	3745364	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	CDS	3745365	3745420	1	+	2	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	exon	3745365	3745420	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	intron	3745421	3745502	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	CDS	3745503	3745567	1	+	0	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	exon	3745503	3745567	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	intron	3745568	3745681	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	CDS	3745682	3745756	1	+	1	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	exon	3745682	3745756	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	intron	3745757	3745851	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	CDS	3745852	3745930	1	+	1	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	exon	3745852	3745930	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	intron	3745931	3746025	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	CDS	3746026	3746098	0.84	+	0	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	exon	3746026	3746098	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	intron	3746099	3746264	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	CDS	3746265	3746321	0.72	+	2	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	exon	3746265	3746321	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	intron	3746322	3746427	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	CDS	3746428	3746546	1	+	2	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	exon	3746428	3746546	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	intron	3746547	3746645	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	CDS	3746646	3746765	1	+	0	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	exon	3746646	3746765	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	intron	3746766	3746854	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	CDS	3746855	3747286	0.99	+	0	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	exon	3746855	3747286	.	+	.	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
Ledus.S3	AUGUSTUS	stop_codon	3747287	3747289	.	+	0	transcript_id "Ledus.S3G047400.t1"; gene_id "Ledus.S3G047400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11817.t1 is derived from g5436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6967683	6968809	.	+	.	Ledus.S4G097300
Ledus.S4	AUGUSTUS	transcript	6967683	6968809	.	+	.	transcript_id "Ledus.S4G097300.t1"; gene_id "Ledus.S4G097300"
Ledus.S4	AUGUSTUS	start_codon	6967683	6967685	.	+	0	transcript_id "Ledus.S4G097300.t1"; gene_id "Ledus.S4G097300"
Ledus.S4	AUGUSTUS	CDS	6967683	6968396	0.85	+	0	transcript_id "Ledus.S4G097300.t1"; gene_id "Ledus.S4G097300"
Ledus.S4	AUGUSTUS	exon	6967683	6968396	.	+	.	transcript_id "Ledus.S4G097300.t1"; gene_id "Ledus.S4G097300"
Ledus.S4	AUGUSTUS	intron	6968397	6968509	.	+	.	transcript_id "Ledus.S4G097300.t1"; gene_id "Ledus.S4G097300"
Ledus.S4	AUGUSTUS	CDS	6968510	6968809	0.98	+	0	transcript_id "Ledus.S4G097300.t1"; gene_id "Ledus.S4G097300"
Ledus.S4	AUGUSTUS	exon	6968510	6968809	.	+	.	transcript_id "Ledus.S4G097300.t1"; gene_id "Ledus.S4G097300"
Ledus.S4	AUGUSTUS	stop_codon	6968810	6968812	.	+	0	transcript_id "Ledus.S4G097300.t1"; gene_id "Ledus.S4G097300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9319.t1 is derived from g10349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6067445	6068490	.	+	.	Ledus.S3G079600
Ledus.S3	AUGUSTUS	transcript	6067445	6068490	.	+	.	transcript_id "Ledus.S3G079600.t1"; gene_id "Ledus.S3G079600"
Ledus.S3	AUGUSTUS	start_codon	6067445	6067447	.	+	0	transcript_id "Ledus.S3G079600.t1"; gene_id "Ledus.S3G079600"
Ledus.S3	AUGUSTUS	CDS	6067445	6067538	0.63	+	0	transcript_id "Ledus.S3G079600.t1"; gene_id "Ledus.S3G079600"
Ledus.S3	AUGUSTUS	exon	6067445	6067538	.	+	.	transcript_id "Ledus.S3G079600.t1"; gene_id "Ledus.S3G079600"
Ledus.S3	AUGUSTUS	intron	6067539	6067722	.	+	.	transcript_id "Ledus.S3G079600.t1"; gene_id "Ledus.S3G079600"
Ledus.S3	AUGUSTUS	CDS	6067723	6067823	0.44	+	2	transcript_id "Ledus.S3G079600.t1"; gene_id "Ledus.S3G079600"
Ledus.S3	AUGUSTUS	exon	6067723	6067823	.	+	.	transcript_id "Ledus.S3G079600.t1"; gene_id "Ledus.S3G079600"
Ledus.S3	AUGUSTUS	intron	6067824	6068376	.	+	.	transcript_id "Ledus.S3G079600.t1"; gene_id "Ledus.S3G079600"
Ledus.S3	AUGUSTUS	CDS	6068377	6068490	0.5	+	0	transcript_id "Ledus.S3G079600.t1"; gene_id "Ledus.S3G079600"
Ledus.S3	AUGUSTUS	exon	6068377	6068490	.	+	.	transcript_id "Ledus.S3G079600.t1"; gene_id "Ledus.S3G079600"
Ledus.S3	AUGUSTUS	stop_codon	6068491	6068493	.	+	0	transcript_id "Ledus.S3G079600.t1"; gene_id "Ledus.S3G079600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6230.t1 is derived from g3673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29767801	29769087	.	+	.	Ledus.S1G365100
Ledus.S1	AUGUSTUS	transcript	29767801	29769087	.	+	.	transcript_id "Ledus.S1G365100.t1"; gene_id "Ledus.S1G365100"
Ledus.S1	AUGUSTUS	start_codon	29767801	29767803	.	+	0	transcript_id "Ledus.S1G365100.t1"; gene_id "Ledus.S1G365100"
Ledus.S1	AUGUSTUS	CDS	29767801	29769087	0.99	+	0	transcript_id "Ledus.S1G365100.t1"; gene_id "Ledus.S1G365100"
Ledus.S1	AUGUSTUS	exon	29767801	29769087	.	+	.	transcript_id "Ledus.S1G365100.t1"; gene_id "Ledus.S1G365100"
Ledus.S1	AUGUSTUS	stop_codon	29769088	29769090	.	+	0	transcript_id "Ledus.S1G365100.t1"; gene_id "Ledus.S1G365100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5788.t1 is derived from g3230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26798102	26799799	.	+	.	Ledus.S1G320900
Ledus.S1	AUGUSTUS	transcript	26798102	26799799	.	+	.	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	start_codon	26798102	26798104	.	+	0	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	CDS	26798102	26798193	0.48	+	0	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	exon	26798102	26798193	.	+	.	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	intron	26798194	26798427	.	+	.	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	CDS	26798428	26798457	0.29	+	1	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	exon	26798428	26798457	.	+	.	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	intron	26798458	26798556	.	+	.	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	CDS	26798557	26798908	0.79	+	1	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	exon	26798557	26798908	.	+	.	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	intron	26798909	26799016	.	+	.	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	CDS	26799017	26799799	1	+	0	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	exon	26799017	26799799	.	+	.	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
Ledus.S1	AUGUSTUS	stop_codon	26799800	26799802	.	+	0	transcript_id "Ledus.S1G320900.t1"; gene_id "Ledus.S1G320900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1424.t1 is derived from g8285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9984705	9987142	.	+	.	Ledus.S2G130600
Ledus.S2	AUGUSTUS	transcript	9984705	9987142	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	start_codon	9984705	9984707	.	+	0	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	CDS	9984705	9984729	0.92	+	0	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	exon	9984705	9984729	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	intron	9984730	9984826	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	CDS	9984827	9985569	1	+	2	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	exon	9984827	9985569	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	intron	9985570	9985652	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	CDS	9985653	9985841	1	+	0	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	exon	9985653	9985841	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	intron	9985842	9985913	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	CDS	9985914	9986022	1	+	0	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	exon	9985914	9986022	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	intron	9986023	9986099	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	CDS	9986100	9986158	1	+	2	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	exon	9986100	9986158	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	intron	9986159	9986253	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	CDS	9986254	9986329	0.8	+	0	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	exon	9986254	9986329	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	intron	9986330	9986557	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	CDS	9986558	9986613	0.78	+	2	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	exon	9986558	9986613	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	intron	9986614	9986697	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	CDS	9986698	9986744	0.41	+	0	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	exon	9986698	9986744	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	intron	9986745	9986889	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	CDS	9986890	9986956	0.41	+	1	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	exon	9986890	9986956	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	intron	9986957	9987055	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	CDS	9987056	9987142	0.41	+	0	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	exon	9987056	9987142	.	+	.	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
Ledus.S2	AUGUSTUS	stop_codon	9987143	9987145	.	+	0	transcript_id "Ledus.S2G130600.t1"; gene_id "Ledus.S2G130600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5680.t1 is derived from g3119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25777993	25780075	.	+	.	Ledus.S1G310100
Ledus.S1	AUGUSTUS	transcript	25777993	25780075	.	+	.	transcript_id "Ledus.S1G310100.t1"; gene_id "Ledus.S1G310100"
Ledus.S1	AUGUSTUS	start_codon	25777993	25777995	.	+	0	transcript_id "Ledus.S1G310100.t1"; gene_id "Ledus.S1G310100"
Ledus.S1	AUGUSTUS	CDS	25777993	25778082	0.78	+	0	transcript_id "Ledus.S1G310100.t1"; gene_id "Ledus.S1G310100"
Ledus.S1	AUGUSTUS	exon	25777993	25778082	.	+	.	transcript_id "Ledus.S1G310100.t1"; gene_id "Ledus.S1G310100"
Ledus.S1	AUGUSTUS	intron	25778083	25778158	.	+	.	transcript_id "Ledus.S1G310100.t1"; gene_id "Ledus.S1G310100"
Ledus.S1	AUGUSTUS	CDS	25778159	25780075	0.95	+	0	transcript_id "Ledus.S1G310100.t1"; gene_id "Ledus.S1G310100"
Ledus.S1	AUGUSTUS	exon	25778159	25780075	.	+	.	transcript_id "Ledus.S1G310100.t1"; gene_id "Ledus.S1G310100"
Ledus.S1	AUGUSTUS	stop_codon	25780076	25780078	.	+	0	transcript_id "Ledus.S1G310100.t1"; gene_id "Ledus.S1G310100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6926.t1 is derived from g4370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35505243	35505449	.	-	.	Ledus.S1G434700
Ledus.S1	AUGUSTUS	transcript	35505243	35505449	.	-	.	transcript_id "Ledus.S1G434700.t1"; gene_id "Ledus.S1G434700"
Ledus.S1	AUGUSTUS	stop_codon	35505240	35505242	.	-	0	transcript_id "Ledus.S1G434700.t1"; gene_id "Ledus.S1G434700"
Ledus.S1	AUGUSTUS	CDS	35505243	35505449	0.57	-	0	transcript_id "Ledus.S1G434700.t1"; gene_id "Ledus.S1G434700"
Ledus.S1	AUGUSTUS	exon	35505243	35505449	.	-	.	transcript_id "Ledus.S1G434700.t1"; gene_id "Ledus.S1G434700"
Ledus.S1	AUGUSTUS	start_codon	35505447	35505449	.	-	0	transcript_id "Ledus.S1G434700.t1"; gene_id "Ledus.S1G434700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12274.t1 is derived from g5894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10809280	10811524	.	+	.	Ledus.S4G143000
Ledus.S4	AUGUSTUS	transcript	10809280	10811524	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	start_codon	10809280	10809282	.	+	0	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	CDS	10809280	10809432	0.69	+	0	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	exon	10809280	10809432	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	intron	10809433	10809558	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	CDS	10809559	10809576	0.66	+	0	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	exon	10809559	10809576	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	intron	10809577	10809789	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	CDS	10809790	10810053	0.99	+	0	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	exon	10809790	10810053	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	intron	10810054	10810147	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	CDS	10810148	10810261	0.55	+	0	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	exon	10810148	10810261	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	intron	10810262	10810397	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	CDS	10810398	10810481	0.96	+	0	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	exon	10810398	10810481	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	intron	10810482	10810620	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	CDS	10810621	10810830	0.99	+	0	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	exon	10810621	10810830	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	intron	10810831	10810907	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	CDS	10810908	10811018	1	+	0	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	exon	10810908	10811018	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	intron	10811019	10811121	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	CDS	10811122	10811182	1	+	0	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	exon	10811122	10811182	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	intron	10811183	10811258	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	CDS	10811259	10811342	1	+	2	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	exon	10811259	10811342	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	intron	10811343	10811420	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	CDS	10811421	10811524	1	+	2	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	exon	10811421	10811524	.	+	.	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
Ledus.S4	AUGUSTUS	stop_codon	10811525	10811527	.	+	0	transcript_id "Ledus.S4G143000.t1"; gene_id "Ledus.S4G143000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6194.t1 is derived from g3637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29542740	29543264	.	-	.	Ledus.S1G361500
Ledus.S1	AUGUSTUS	transcript	29542740	29543264	.	-	.	transcript_id "Ledus.S1G361500.t1"; gene_id "Ledus.S1G361500"
Ledus.S1	AUGUSTUS	stop_codon	29542737	29542739	.	-	0	transcript_id "Ledus.S1G361500.t1"; gene_id "Ledus.S1G361500"
Ledus.S1	AUGUSTUS	CDS	29542740	29543264	0.5	-	0	transcript_id "Ledus.S1G361500.t1"; gene_id "Ledus.S1G361500"
Ledus.S1	AUGUSTUS	exon	29542740	29543264	.	-	.	transcript_id "Ledus.S1G361500.t1"; gene_id "Ledus.S1G361500"
Ledus.S1	AUGUSTUS	start_codon	29543262	29543264	.	-	0	transcript_id "Ledus.S1G361500.t1"; gene_id "Ledus.S1G361500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12670.t1 is derived from g6292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13808085	13809290	.	+	.	Ledus.S4G182600
Ledus.S4	AUGUSTUS	transcript	13808085	13809290	.	+	.	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	start_codon	13808085	13808087	.	+	0	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	CDS	13808085	13808261	0.86	+	0	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	exon	13808085	13808261	.	+	.	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	intron	13808262	13808344	.	+	.	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	CDS	13808345	13808467	1	+	0	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	exon	13808345	13808467	.	+	.	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	intron	13808468	13808552	.	+	.	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	CDS	13808553	13808771	1	+	0	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	exon	13808553	13808771	.	+	.	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	intron	13808772	13808861	.	+	.	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	CDS	13808862	13809290	1	+	0	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	exon	13808862	13809290	.	+	.	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
Ledus.S4	AUGUSTUS	stop_codon	13809291	13809293	.	+	0	transcript_id "Ledus.S4G182600.t1"; gene_id "Ledus.S4G182600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10933.t1 is derived from g4551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	689987	693980	.	-	.	Ledus.S4G008900
Ledus.S4	AUGUSTUS	transcript	689987	693980	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	stop_codon	689984	689986	.	-	0	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	689987	690130	0.94	-	0	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	689987	690130	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	690131	690227	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	690228	690275	0.96	-	0	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	690228	690275	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	690276	690385	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	690386	690490	0.6	-	0	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	690386	690490	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	690491	690591	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	690592	690657	1	-	0	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	690592	690657	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	690658	690840	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	690841	691094	0.87	-	2	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	690841	691094	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	691095	691188	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	691189	691295	1	-	1	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	691189	691295	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	691296	691458	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	691459	691539	1	-	1	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	691459	691539	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	691540	691634	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	691635	691697	1	-	1	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	691635	691697	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	691698	691768	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	691769	691877	1	-	2	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	691769	691877	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	691878	692043	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	692044	692137	1	-	0	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	692044	692137	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	692138	692357	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	692358	692419	1	-	2	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	692358	692419	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	692420	692551	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	692552	692740	1	-	2	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	692552	692740	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	692741	692876	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	692877	692993	1	-	2	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	692877	692993	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	692994	693116	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	693117	693219	0.73	-	0	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	693117	693219	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	693220	693330	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	693331	693435	0.67	-	0	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	693331	693435	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	693436	693522	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	693523	693578	1	-	2	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	693523	693578	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	intron	693579	693697	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	CDS	693698	693980	1	-	0	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	exon	693698	693980	.	-	.	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
Ledus.S4	AUGUSTUS	start_codon	693978	693980	.	-	0	transcript_id "Ledus.S4G008900.t1"; gene_id "Ledus.S4G008900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10338.t1 is derived from g11368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14322618	14325400	.	-	.	Ledus.S3G181500
Ledus.S3	AUGUSTUS	transcript	14322618	14324215	.	-	.	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	stop_codon	14322615	14322617	.	-	0	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	CDS	14322618	14323268	0.91	-	0	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	exon	14322618	14323268	.	-	.	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	intron	14323269	14323361	.	-	.	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	CDS	14323362	14323528	1	-	2	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	exon	14323362	14323528	.	-	.	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	intron	14323529	14323622	.	-	.	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	CDS	14323623	14323953	0.96	-	0	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	exon	14323623	14323953	.	-	.	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	intron	14323954	14324053	.	-	.	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	CDS	14324054	14324215	0.93	-	0	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	exon	14324054	14324215	.	-	.	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	start_codon	14324213	14324215	.	-	0	transcript_id "Ledus.S3G181500.t1"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	transcript	14322618	14325400	.	-	.	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	stop_codon	14322615	14322617	.	-	0	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	CDS	14322618	14323268	0.92	-	0	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	exon	14322618	14323268	.	-	.	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	intron	14323269	14323361	.	-	.	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	CDS	14323362	14323528	1	-	2	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	exon	14323362	14323528	.	-	.	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	intron	14323529	14323622	.	-	.	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	CDS	14323623	14323953	0.97	-	0	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	exon	14323623	14323953	.	-	.	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	intron	14323954	14324053	.	-	.	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	CDS	14324054	14325400	0.49	-	0	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	exon	14324054	14325400	.	-	.	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	start_codon	14325398	14325400	.	-	0	transcript_id "Ledus.S3G181500.t2"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	transcript	14323994	14325400	.	-	.	transcript_id "Ledus.S3G181500.t3"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	stop_codon	14323991	14323993	.	-	0	transcript_id "Ledus.S3G181500.t3"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	CDS	14323994	14325400	0.69	-	0	transcript_id "Ledus.S3G181500.t3"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	exon	14323994	14325400	.	-	.	transcript_id "Ledus.S3G181500.t3"; gene_id "Ledus.S3G181500"
Ledus.S3	AUGUSTUS	start_codon	14325398	14325400	.	-	0	transcript_id "Ledus.S3G181500.t3"; gene_id "Ledus.S3G181500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8646.t1 is derived from g9676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1065797	1067689	.	+	.	Ledus.S3G012300
Ledus.S3	AUGUSTUS	transcript	1065797	1067689	.	+	.	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	start_codon	1065797	1065799	.	+	0	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	CDS	1065797	1065917	0.86	+	0	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	exon	1065797	1065917	.	+	.	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	intron	1065918	1066023	.	+	.	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	CDS	1066024	1066078	0.97	+	2	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	exon	1066024	1066078	.	+	.	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	intron	1066079	1066193	.	+	.	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	CDS	1066194	1066338	0.98	+	1	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	exon	1066194	1066338	.	+	.	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	intron	1066339	1066480	.	+	.	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	CDS	1066481	1066814	1	+	0	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	exon	1066481	1066814	.	+	.	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	intron	1066815	1066968	.	+	.	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	CDS	1066969	1067109	1	+	2	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	exon	1066969	1067109	.	+	.	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	intron	1067110	1067225	.	+	.	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	CDS	1067226	1067689	1	+	2	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	exon	1067226	1067689	.	+	.	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
Ledus.S3	AUGUSTUS	stop_codon	1067690	1067692	.	+	0	transcript_id "Ledus.S3G012300.t1"; gene_id "Ledus.S3G012300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11962.t1 is derived from g5581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8038890	8039199	.	+	.	Ledus.S4G111800
Ledus.S4	AUGUSTUS	transcript	8038890	8039199	.	+	.	transcript_id "Ledus.S4G111800.t1"; gene_id "Ledus.S4G111800"
Ledus.S4	AUGUSTUS	start_codon	8038890	8038892	.	+	0	transcript_id "Ledus.S4G111800.t1"; gene_id "Ledus.S4G111800"
Ledus.S4	AUGUSTUS	CDS	8038890	8039024	0.56	+	0	transcript_id "Ledus.S4G111800.t1"; gene_id "Ledus.S4G111800"
Ledus.S4	AUGUSTUS	exon	8038890	8039024	.	+	.	transcript_id "Ledus.S4G111800.t1"; gene_id "Ledus.S4G111800"
Ledus.S4	AUGUSTUS	intron	8039025	8039097	.	+	.	transcript_id "Ledus.S4G111800.t1"; gene_id "Ledus.S4G111800"
Ledus.S4	AUGUSTUS	CDS	8039098	8039199	1	+	0	transcript_id "Ledus.S4G111800.t1"; gene_id "Ledus.S4G111800"
Ledus.S4	AUGUSTUS	exon	8039098	8039199	.	+	.	transcript_id "Ledus.S4G111800.t1"; gene_id "Ledus.S4G111800"
Ledus.S4	AUGUSTUS	stop_codon	8039200	8039202	.	+	0	transcript_id "Ledus.S4G111800.t1"; gene_id "Ledus.S4G111800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12717.t1 is derived from g6339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14053899	14057148	.	-	.	Ledus.S4G187300
Ledus.S4	AUGUSTUS	transcript	14053899	14057148	.	-	.	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	stop_codon	14053896	14053898	.	-	0	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	CDS	14053899	14054959	1	-	2	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	exon	14053899	14054959	.	-	.	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	intron	14054960	14055046	.	-	.	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	CDS	14055047	14056171	1	-	2	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	exon	14055047	14056171	.	-	.	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	intron	14056172	14056576	.	-	.	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	CDS	14056577	14056627	0.8	-	2	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	exon	14056577	14056627	.	-	.	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	intron	14056628	14056744	.	-	.	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	CDS	14056745	14056793	0.82	-	0	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	exon	14056745	14056793	.	-	.	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	intron	14056794	14056896	.	-	.	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	CDS	14056897	14056972	0.84	-	1	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	exon	14056897	14056972	.	-	.	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	intron	14056973	14057056	.	-	.	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	CDS	14057057	14057148	0.73	-	0	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	exon	14057057	14057148	.	-	.	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
Ledus.S4	AUGUSTUS	start_codon	14057146	14057148	.	-	0	transcript_id "Ledus.S4G187300.t1"; gene_id "Ledus.S4G187300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11504.t1 is derived from g5122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4959044	4959491	.	+	.	Ledus.S4G066000
Ledus.S4	AUGUSTUS	transcript	4959044	4959491	.	+	.	transcript_id "Ledus.S4G066000.t1"; gene_id "Ledus.S4G066000"
Ledus.S4	AUGUSTUS	start_codon	4959044	4959046	.	+	0	transcript_id "Ledus.S4G066000.t1"; gene_id "Ledus.S4G066000"
Ledus.S4	AUGUSTUS	CDS	4959044	4959130	0.75	+	0	transcript_id "Ledus.S4G066000.t1"; gene_id "Ledus.S4G066000"
Ledus.S4	AUGUSTUS	exon	4959044	4959130	.	+	.	transcript_id "Ledus.S4G066000.t1"; gene_id "Ledus.S4G066000"
Ledus.S4	AUGUSTUS	intron	4959131	4959206	.	+	.	transcript_id "Ledus.S4G066000.t1"; gene_id "Ledus.S4G066000"
Ledus.S4	AUGUSTUS	CDS	4959207	4959491	1	+	0	transcript_id "Ledus.S4G066000.t1"; gene_id "Ledus.S4G066000"
Ledus.S4	AUGUSTUS	exon	4959207	4959491	.	+	.	transcript_id "Ledus.S4G066000.t1"; gene_id "Ledus.S4G066000"
Ledus.S4	AUGUSTUS	stop_codon	4959492	4959494	.	+	0	transcript_id "Ledus.S4G066000.t1"; gene_id "Ledus.S4G066000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5078.t1 is derived from g2517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21474810	21475976	.	+	.	Ledus.S1G249900
Ledus.S1	AUGUSTUS	transcript	21474810	21475976	.	+	.	transcript_id "Ledus.S1G249900.t1"; gene_id "Ledus.S1G249900"
Ledus.S1	AUGUSTUS	start_codon	21474810	21474812	.	+	0	transcript_id "Ledus.S1G249900.t1"; gene_id "Ledus.S1G249900"
Ledus.S1	AUGUSTUS	CDS	21474810	21475976	0.99	+	0	transcript_id "Ledus.S1G249900.t1"; gene_id "Ledus.S1G249900"
Ledus.S1	AUGUSTUS	exon	21474810	21475976	.	+	.	transcript_id "Ledus.S1G249900.t1"; gene_id "Ledus.S1G249900"
Ledus.S1	AUGUSTUS	stop_codon	21475977	21475979	.	+	0	transcript_id "Ledus.S1G249900.t1"; gene_id "Ledus.S1G249900"
Ledus.S1	AUGUSTUS	transcript	21475167	21475976	.	+	.	transcript_id "Ledus.S1G249900.t2"; gene_id "Ledus.S1G249900"
Ledus.S1	AUGUSTUS	start_codon	21475167	21475169	.	+	0	transcript_id "Ledus.S1G249900.t2"; gene_id "Ledus.S1G249900"
Ledus.S1	AUGUSTUS	CDS	21475167	21475976	0.58	+	0	transcript_id "Ledus.S1G249900.t2"; gene_id "Ledus.S1G249900"
Ledus.S1	AUGUSTUS	exon	21475167	21475976	.	+	.	transcript_id "Ledus.S1G249900.t2"; gene_id "Ledus.S1G249900"
Ledus.S1	AUGUSTUS	stop_codon	21475977	21475979	.	+	0	transcript_id "Ledus.S1G249900.t2"; gene_id "Ledus.S1G249900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11550.t1 is derived from g5168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5236637	5238568	.	-	.	Ledus.S4G070600
Ledus.S4	AUGUSTUS	transcript	5236637	5238568	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	stop_codon	5236634	5236636	.	-	0	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5236637	5236721	0.85	-	1	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5236637	5236721	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5236722	5236915	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5236916	5237064	1	-	0	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5236916	5237064	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5237065	5237140	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5237141	5237213	0.94	-	1	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5237141	5237213	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5237214	5237591	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5237592	5237746	0.58	-	0	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5237592	5237746	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5237747	5237864	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5237865	5237959	0.47	-	2	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5237865	5237959	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5237960	5238103	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5238104	5238335	0.98	-	0	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5238104	5238335	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5238336	5238430	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5238431	5238568	0.53	-	0	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5238431	5238568	.	-	.	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	start_codon	5238566	5238568	.	-	0	transcript_id "Ledus.S4G070600.t1"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	transcript	5236714	5238568	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	stop_codon	5236711	5236713	.	-	0	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5236714	5236721	0.32	-	2	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5236714	5236721	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5236722	5236818	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5236819	5236835	0.32	-	1	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5236819	5236835	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5236836	5236915	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5236916	5237064	0.49	-	0	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5236916	5237064	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5237065	5237140	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5237141	5237213	0.94	-	1	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5237141	5237213	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5237214	5237591	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5237592	5237746	0.54	-	0	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5237592	5237746	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5237747	5237864	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5237865	5237959	0.53	-	2	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5237865	5237959	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5237960	5238103	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5238104	5238335	1	-	0	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5238104	5238335	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	intron	5238336	5238430	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	CDS	5238431	5238568	0.58	-	0	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	exon	5238431	5238568	.	-	.	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
Ledus.S4	AUGUSTUS	start_codon	5238566	5238568	.	-	0	transcript_id "Ledus.S4G070600.t2"; gene_id "Ledus.S4G070600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3066.t1 is derived from g501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5625430	5627193	.	-	.	Ledus.S1G048700
Ledus.S1	AUGUSTUS	transcript	5625430	5627193	.	-	.	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	stop_codon	5625427	5625429	.	-	0	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	CDS	5625430	5625431	0.92	-	2	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	exon	5625430	5625431	.	-	.	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	intron	5625432	5625531	.	-	.	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	CDS	5625532	5625608	0.55	-	1	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	exon	5625532	5625608	.	-	.	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	intron	5625609	5625690	.	-	.	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	CDS	5625691	5626206	0.46	-	1	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	exon	5625691	5626206	.	-	.	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	intron	5626207	5626294	.	-	.	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	CDS	5626295	5627016	0.78	-	0	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	exon	5626295	5627016	.	-	.	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	intron	5627017	5627124	.	-	.	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	CDS	5627125	5627193	0.75	-	0	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	exon	5627125	5627193	.	-	.	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
Ledus.S1	AUGUSTUS	start_codon	5627191	5627193	.	-	0	transcript_id "Ledus.S1G048700.t1"; gene_id "Ledus.S1G048700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12590.t1 is derived from g6212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13024677	13025162	.	+	.	Ledus.S4G174600
Ledus.S4	AUGUSTUS	transcript	13024677	13025162	.	+	.	transcript_id "Ledus.S4G174600.t1"; gene_id "Ledus.S4G174600"
Ledus.S4	AUGUSTUS	start_codon	13024677	13024679	.	+	0	transcript_id "Ledus.S4G174600.t1"; gene_id "Ledus.S4G174600"
Ledus.S4	AUGUSTUS	CDS	13024677	13024887	0.58	+	0	transcript_id "Ledus.S4G174600.t1"; gene_id "Ledus.S4G174600"
Ledus.S4	AUGUSTUS	exon	13024677	13024887	.	+	.	transcript_id "Ledus.S4G174600.t1"; gene_id "Ledus.S4G174600"
Ledus.S4	AUGUSTUS	intron	13024888	13025064	.	+	.	transcript_id "Ledus.S4G174600.t1"; gene_id "Ledus.S4G174600"
Ledus.S4	AUGUSTUS	CDS	13025065	13025162	0.84	+	2	transcript_id "Ledus.S4G174600.t1"; gene_id "Ledus.S4G174600"
Ledus.S4	AUGUSTUS	exon	13025065	13025162	.	+	.	transcript_id "Ledus.S4G174600.t1"; gene_id "Ledus.S4G174600"
Ledus.S4	AUGUSTUS	stop_codon	13025163	13025165	.	+	0	transcript_id "Ledus.S4G174600.t1"; gene_id "Ledus.S4G174600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9469.t1 is derived from g10499.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7179030	7179685	.	+	.	Ledus.S3G094600
Ledus.S3	AUGUSTUS	transcript	7179030	7179685	.	+	.	transcript_id "Ledus.S3G094600.t1"; gene_id "Ledus.S3G094600"
Ledus.S3	AUGUSTUS	start_codon	7179030	7179032	.	+	0	transcript_id "Ledus.S3G094600.t1"; gene_id "Ledus.S3G094600"
Ledus.S3	AUGUSTUS	CDS	7179030	7179110	0.97	+	0	transcript_id "Ledus.S3G094600.t1"; gene_id "Ledus.S3G094600"
Ledus.S3	AUGUSTUS	exon	7179030	7179110	.	+	.	transcript_id "Ledus.S3G094600.t1"; gene_id "Ledus.S3G094600"
Ledus.S3	AUGUSTUS	intron	7179111	7179319	.	+	.	transcript_id "Ledus.S3G094600.t1"; gene_id "Ledus.S3G094600"
Ledus.S3	AUGUSTUS	CDS	7179320	7179424	0.99	+	0	transcript_id "Ledus.S3G094600.t1"; gene_id "Ledus.S3G094600"
Ledus.S3	AUGUSTUS	exon	7179320	7179424	.	+	.	transcript_id "Ledus.S3G094600.t1"; gene_id "Ledus.S3G094600"
Ledus.S3	AUGUSTUS	intron	7179425	7179577	.	+	.	transcript_id "Ledus.S3G094600.t1"; gene_id "Ledus.S3G094600"
Ledus.S3	AUGUSTUS	CDS	7179578	7179685	0.9	+	0	transcript_id "Ledus.S3G094600.t1"; gene_id "Ledus.S3G094600"
Ledus.S3	AUGUSTUS	exon	7179578	7179685	.	+	.	transcript_id "Ledus.S3G094600.t1"; gene_id "Ledus.S3G094600"
Ledus.S3	AUGUSTUS	stop_codon	7179686	7179688	.	+	0	transcript_id "Ledus.S3G094600.t1"; gene_id "Ledus.S3G094600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10509.t1 is derived from g11539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15662592	15667244	.	+	.	Ledus.S3G198600
Ledus.S3	AUGUSTUS	transcript	15662592	15667244	.	+	.	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	start_codon	15662592	15662594	.	+	0	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	CDS	15662592	15662781	0.5	+	0	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	exon	15662592	15662781	.	+	.	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	intron	15662782	15662876	.	+	.	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	CDS	15662877	15664108	0.64	+	2	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	exon	15662877	15664108	.	+	.	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	intron	15664109	15664295	.	+	.	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	CDS	15664296	15664412	1	+	0	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	exon	15664296	15664412	.	+	.	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	intron	15664413	15664604	.	+	.	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	CDS	15664605	15667244	0.95	+	0	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	exon	15664605	15667244	.	+	.	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
Ledus.S3	AUGUSTUS	stop_codon	15667245	15667247	.	+	0	transcript_id "Ledus.S3G198600.t1"; gene_id "Ledus.S3G198600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1477.t1 is derived from g8338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10440620	10440988	.	-	.	Ledus.S2G135900
Ledus.S2	AUGUSTUS	transcript	10440620	10440988	.	-	.	transcript_id "Ledus.S2G135900.t1"; gene_id "Ledus.S2G135900"
Ledus.S2	AUGUSTUS	stop_codon	10440617	10440619	.	-	0	transcript_id "Ledus.S2G135900.t1"; gene_id "Ledus.S2G135900"
Ledus.S2	AUGUSTUS	CDS	10440620	10440988	0.6	-	0	transcript_id "Ledus.S2G135900.t1"; gene_id "Ledus.S2G135900"
Ledus.S2	AUGUSTUS	exon	10440620	10440988	.	-	.	transcript_id "Ledus.S2G135900.t1"; gene_id "Ledus.S2G135900"
Ledus.S2	AUGUSTUS	start_codon	10440986	10440988	.	-	0	transcript_id "Ledus.S2G135900.t1"; gene_id "Ledus.S2G135900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3124.t1 is derived from g559.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6148570	6149884	.	-	.	Ledus.S1G054500
Ledus.S1	AUGUSTUS	transcript	6148570	6149884	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	stop_codon	6148567	6148569	.	-	0	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6148570	6148734	1	-	0	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6148570	6148734	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6148735	6148817	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6148818	6148859	1	-	0	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6148818	6148859	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6148860	6148936	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6148937	6149029	1	-	0	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6148937	6149029	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6149030	6149105	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6149106	6149203	1	-	2	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6149106	6149203	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6149204	6149281	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6149282	6149388	1	-	1	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6149282	6149388	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6149389	6149473	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6149474	6149536	0.89	-	1	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6149474	6149536	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6149537	6149654	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6149655	6149659	1	-	0	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6149655	6149659	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6149660	6149743	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6149744	6149884	0.59	-	0	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6149744	6149884	.	-	.	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	start_codon	6149882	6149884	.	-	0	transcript_id "Ledus.S1G054500.t1"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	transcript	6148570	6149884	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	stop_codon	6148567	6148569	.	-	0	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6148570	6148737	0.96	-	0	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6148570	6148737	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6148738	6148817	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6148818	6148859	1	-	0	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6148818	6148859	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6148860	6148936	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6148937	6149029	1	-	0	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6148937	6149029	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6149030	6149105	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6149106	6149203	1	-	2	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6149106	6149203	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6149204	6149281	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6149282	6149388	1	-	1	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6149282	6149388	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6149389	6149473	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6149474	6149536	0.93	-	1	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6149474	6149536	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6149537	6149654	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6149655	6149659	1	-	0	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6149655	6149659	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	intron	6149660	6149743	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	CDS	6149744	6149884	0.49	-	0	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	exon	6149744	6149884	.	-	.	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
Ledus.S1	AUGUSTUS	start_codon	6149882	6149884	.	-	0	transcript_id "Ledus.S1G054500.t2"; gene_id "Ledus.S1G054500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7134.t1 is derived from g6665.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1709984	1717399	.	+	.	Ledus.C7G019500
Ledus.C7	AUGUSTUS	transcript	1709984	1717399	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	start_codon	1709984	1709986	.	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1709984	1710148	0.57	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1709984	1710148	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1710149	1710491	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1710492	1710551	0.69	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1710492	1710551	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1710552	1710790	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1710791	1710864	1	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1710791	1710864	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1710865	1710959	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1710960	1711052	1	+	1	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1710960	1711052	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1711053	1711237	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1711238	1711907	0.98	+	1	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1711238	1711907	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1711908	1712018	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1712019	1712099	0.95	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1712019	1712099	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1712100	1712262	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1712263	1712463	1	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1712263	1712463	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1712464	1712918	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1712919	1712990	1	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1712919	1712990	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1712991	1713154	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1713155	1713307	1	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1713155	1713307	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1713308	1713462	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1713463	1713528	0.98	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1713463	1713528	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1713529	1713630	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1713631	1713669	1	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1713631	1713669	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1713670	1714150	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1714151	1714189	1	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1714151	1714189	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1714190	1714313	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1714314	1714370	1	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1714314	1714370	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1714371	1714602	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1714603	1714662	0.95	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1714603	1714662	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1714663	1714784	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1714785	1714970	0.97	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1714785	1714970	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1714971	1715191	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1715192	1715338	1	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1715192	1715338	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1715339	1715449	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1715450	1715524	1	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1715450	1715524	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1715525	1715610	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1715611	1716144	0.99	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1715611	1716144	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1716145	1716319	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1716320	1716475	1	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1716320	1716475	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1716476	1716663	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1716664	1716755	1	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1716664	1716755	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1716756	1716850	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1716851	1716965	1	+	1	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1716851	1716965	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1716966	1717060	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1717061	1717193	0.88	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1717061	1717193	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	intron	1717194	1717280	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	CDS	1717281	1717399	0.55	+	2	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	exon	1717281	1717399	.	+	.	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
Ledus.C7	AUGUSTUS	stop_codon	1717400	1717402	.	+	0	transcript_id "Ledus.C7G019500.t1"; gene_id "Ledus.C7G019500"
# This transcript jg1128.t2 is derived from g7989.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1129.t1 is derived from g7990.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7797891	7806063	.	-	.	Ledus.S2G101100
Ledus.S2	AUGUSTUS	transcript	7798105	7806063	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	stop_codon	7798102	7798104	.	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7798105	7798151	1	-	2	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7798105	7798151	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7798152	7798441	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7798442	7798530	1	-	1	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7798442	7798530	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7798531	7798676	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7798677	7798814	1	-	1	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7798677	7798814	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7798815	7798903	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7798904	7799361	1	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7798904	7799361	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7799362	7799438	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7799439	7799499	1	-	1	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7799439	7799499	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7799500	7799599	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7799600	7799695	1	-	1	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7799600	7799695	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7799696	7799791	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7799792	7799872	1	-	1	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7799792	7799872	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7799873	7800132	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7800133	7800424	0.97	-	2	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7800133	7800424	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7800425	7800618	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7800619	7801052	0.97	-	1	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7800619	7801052	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7801053	7801173	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7801174	7801262	1	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7801174	7801262	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7801263	7801337	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7801338	7801536	1	-	1	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7801338	7801536	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7801537	7801628	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7801629	7801702	1	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7801629	7801702	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7801703	7801786	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7801787	7801879	1	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7801787	7801879	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7801880	7802007	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7802008	7802103	1	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7802008	7802103	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7802104	7802195	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7802196	7802396	1	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7802196	7802396	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7802397	7802566	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7802567	7802689	1	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7802567	7802689	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7802690	7802976	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7802977	7803066	1	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7802977	7803066	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7803067	7803211	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7803212	7803299	1	-	1	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7803212	7803299	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7803300	7803493	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7803494	7803613	1	-	1	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7803494	7803613	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7803614	7803723	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7803724	7803815	0.98	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7803724	7803815	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7803816	7803945	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7803946	7804158	1	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7803946	7804158	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7804159	7804332	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7804333	7806063	1	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7804333	7806063	.	-	.	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	start_codon	7806061	7806063	.	-	0	transcript_id "Ledus.S2G101100.t1"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	transcript	7797891	7806063	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	stop_codon	7797888	7797890	.	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7797891	7798007	0.94	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7797891	7798007	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7798008	7798088	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7798089	7798151	1	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7798089	7798151	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7798152	7798340	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7798341	7798530	1	-	1	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7798341	7798530	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7798531	7798676	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7798677	7798814	1	-	1	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7798677	7798814	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7798815	7798903	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7798904	7799361	0.99	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7798904	7799361	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7799362	7799438	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7799439	7799499	1	-	1	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7799439	7799499	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7799500	7799599	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7799600	7799695	1	-	1	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7799600	7799695	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7799696	7799791	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7799792	7799872	1	-	1	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7799792	7799872	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7799873	7800132	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7800133	7800424	0.99	-	2	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7800133	7800424	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7800425	7800618	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7800619	7801052	0.97	-	1	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7800619	7801052	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7801053	7801173	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7801174	7801262	1	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7801174	7801262	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7801263	7801337	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7801338	7801536	1	-	1	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7801338	7801536	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7801537	7801628	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7801629	7801702	1	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7801629	7801702	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7801703	7801786	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7801787	7801879	1	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7801787	7801879	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7801880	7802007	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7802008	7802103	1	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7802008	7802103	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7802104	7802195	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7802196	7802396	1	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7802196	7802396	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7802397	7802566	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7802567	7802689	1	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7802567	7802689	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7802690	7802976	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7802977	7803066	1	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7802977	7803066	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7803067	7803211	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7803212	7803299	1	-	1	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7803212	7803299	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7803300	7803493	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7803494	7803613	0.98	-	1	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7803494	7803613	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7803614	7803723	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7803724	7803815	0.99	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7803724	7803815	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7803816	7803945	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7803946	7804158	1	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7803946	7804158	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	intron	7804159	7804332	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	CDS	7804333	7806063	0.99	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	exon	7804333	7806063	.	-	.	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
Ledus.S2	AUGUSTUS	start_codon	7806061	7806063	.	-	0	transcript_id "Ledus.S2G101100.t2"; gene_id "Ledus.S2G101100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13108.t1 is derived from g6918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5895521	5896479	.	+	.	Ledus.S6G017000
Ledus.S6	AUGUSTUS	transcript	5895521	5896479	.	+	.	transcript_id "Ledus.S6G017000.t1"; gene_id "Ledus.S6G017000"
Ledus.S6	AUGUSTUS	start_codon	5895521	5895523	.	+	0	transcript_id "Ledus.S6G017000.t1"; gene_id "Ledus.S6G017000"
Ledus.S6	AUGUSTUS	CDS	5895521	5895799	0.93	+	0	transcript_id "Ledus.S6G017000.t1"; gene_id "Ledus.S6G017000"
Ledus.S6	AUGUSTUS	exon	5895521	5895799	.	+	.	transcript_id "Ledus.S6G017000.t1"; gene_id "Ledus.S6G017000"
Ledus.S6	AUGUSTUS	intron	5895800	5896194	.	+	.	transcript_id "Ledus.S6G017000.t1"; gene_id "Ledus.S6G017000"
Ledus.S6	AUGUSTUS	CDS	5896195	5896479	0.93	+	0	transcript_id "Ledus.S6G017000.t1"; gene_id "Ledus.S6G017000"
Ledus.S6	AUGUSTUS	exon	5896195	5896479	.	+	.	transcript_id "Ledus.S6G017000.t1"; gene_id "Ledus.S6G017000"
Ledus.S6	AUGUSTUS	stop_codon	5896480	5896482	.	+	0	transcript_id "Ledus.S6G017000.t1"; gene_id "Ledus.S6G017000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1250.t1 is derived from g8111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8882110	8883591	.	-	.	Ledus.S2G113200
Ledus.S2	AUGUSTUS	transcript	8882110	8883591	.	-	.	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	stop_codon	8882107	8882109	.	-	0	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	CDS	8882110	8882364	0.98	-	0	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	exon	8882110	8882364	.	-	.	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	intron	8882365	8882444	.	-	.	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	CDS	8882445	8882728	0.97	-	2	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	exon	8882445	8882728	.	-	.	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	intron	8882729	8882832	.	-	.	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	CDS	8882833	8883077	1	-	1	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	exon	8882833	8883077	.	-	.	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	intron	8883078	8883148	.	-	.	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	CDS	8883149	8883591	0.87	-	0	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	exon	8883149	8883591	.	-	.	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
Ledus.S2	AUGUSTUS	start_codon	8883589	8883591	.	-	0	transcript_id "Ledus.S2G113200.t1"; gene_id "Ledus.S2G113200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2323.t1 is derived from g9186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17163694	17170453	.	-	.	Ledus.S2G220500
Ledus.S2	AUGUSTUS	transcript	17163694	17170453	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	stop_codon	17163691	17163693	.	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17163694	17164353	0.98	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17163694	17164353	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17164354	17164490	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17164491	17164709	1	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17164491	17164709	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17164710	17164980	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17164981	17165271	1	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17164981	17165271	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17165272	17165407	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17165408	17165482	1	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17165408	17165482	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17165483	17165618	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17165619	17165777	1	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17165619	17165777	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17165778	17165863	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17165864	17166043	1	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17165864	17166043	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17166044	17166145	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17166146	17166657	0.9	-	2	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17166146	17166657	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17166658	17166788	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17166789	17167164	0.96	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17166789	17167164	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17167165	17167264	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17167265	17167397	1	-	1	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17167265	17167397	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17167398	17167601	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17167602	17167786	1	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17167602	17167786	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17167787	17168199	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17168200	17168307	1	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17168200	17168307	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17168308	17168443	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17168444	17168980	0.99	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17168444	17168980	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17168981	17169102	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17169103	17169192	0.85	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17169103	17169192	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17169193	17169313	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17169314	17169649	0.99	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17169314	17169649	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17169650	17169904	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17169905	17170094	1	-	1	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17169905	17170094	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	intron	17170095	17170229	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	CDS	17170230	17170453	0.81	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	exon	17170230	17170453	.	-	.	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
Ledus.S2	AUGUSTUS	start_codon	17170451	17170453	.	-	0	transcript_id "Ledus.S2G220500.t1"; gene_id "Ledus.S2G220500"
# This transcript jg3739.t1 is derived from g1174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11269131	11269969	.	-	.	Ledus.S1G115900
Ledus.S1	AUGUSTUS	transcript	11269131	11269969	.	-	.	transcript_id "Ledus.S1G115900.t1"; gene_id "Ledus.S1G115900"
Ledus.S1	AUGUSTUS	stop_codon	11269128	11269130	.	-	0	transcript_id "Ledus.S1G115900.t1"; gene_id "Ledus.S1G115900"
Ledus.S1	AUGUSTUS	CDS	11269131	11269194	0.45	-	1	transcript_id "Ledus.S1G115900.t1"; gene_id "Ledus.S1G115900"
Ledus.S1	AUGUSTUS	exon	11269131	11269194	.	-	.	transcript_id "Ledus.S1G115900.t1"; gene_id "Ledus.S1G115900"
Ledus.S1	AUGUSTUS	intron	11269195	11269390	.	-	.	transcript_id "Ledus.S1G115900.t1"; gene_id "Ledus.S1G115900"
Ledus.S1	AUGUSTUS	CDS	11269391	11269601	0.3	-	2	transcript_id "Ledus.S1G115900.t1"; gene_id "Ledus.S1G115900"
Ledus.S1	AUGUSTUS	exon	11269391	11269601	.	-	.	transcript_id "Ledus.S1G115900.t1"; gene_id "Ledus.S1G115900"
Ledus.S1	AUGUSTUS	intron	11269602	11269716	.	-	.	transcript_id "Ledus.S1G115900.t1"; gene_id "Ledus.S1G115900"
Ledus.S1	AUGUSTUS	CDS	11269717	11269969	0.6	-	0	transcript_id "Ledus.S1G115900.t1"; gene_id "Ledus.S1G115900"
Ledus.S1	AUGUSTUS	exon	11269717	11269969	.	-	.	transcript_id "Ledus.S1G115900.t1"; gene_id "Ledus.S1G115900"
Ledus.S1	AUGUSTUS	start_codon	11269967	11269969	.	-	0	transcript_id "Ledus.S1G115900.t1"; gene_id "Ledus.S1G115900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1615.t1 is derived from g8476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11436404	11437541	.	-	.	Ledus.S2G149700
Ledus.S2	AUGUSTUS	transcript	11436404	11437541	.	-	.	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	stop_codon	11436401	11436403	.	-	0	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	CDS	11436404	11436480	0.81	-	2	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	exon	11436404	11436480	.	-	.	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	intron	11436481	11436705	.	-	.	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	CDS	11436706	11436846	0.62	-	2	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	exon	11436706	11436846	.	-	.	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	intron	11436847	11436913	.	-	.	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	CDS	11436914	11437004	1	-	0	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	exon	11436914	11437004	.	-	.	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	intron	11437005	11437129	.	-	.	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	CDS	11437130	11437192	1	-	0	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	exon	11437130	11437192	.	-	.	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	intron	11437193	11437315	.	-	.	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	CDS	11437316	11437365	1	-	2	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	exon	11437316	11437365	.	-	.	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	intron	11437366	11437483	.	-	.	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	CDS	11437484	11437541	0.96	-	0	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	exon	11437484	11437541	.	-	.	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
Ledus.S2	AUGUSTUS	start_codon	11437539	11437541	.	-	0	transcript_id "Ledus.S2G149700.t1"; gene_id "Ledus.S2G149700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6324.t1 is derived from g3767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30495460	30496396	.	-	.	Ledus.S1G374500
Ledus.S1	AUGUSTUS	transcript	30495460	30496396	.	-	.	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	stop_codon	30495457	30495459	.	-	0	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	CDS	30495460	30495571	1	-	1	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	exon	30495460	30495571	.	-	.	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	intron	30495572	30495698	.	-	.	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	CDS	30495699	30495930	1	-	2	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	exon	30495699	30495930	.	-	.	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	intron	30495931	30496067	.	-	.	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	CDS	30496068	30496116	1	-	0	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	exon	30496068	30496116	.	-	.	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	intron	30496117	30496342	.	-	.	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	CDS	30496343	30496396	1	-	0	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	exon	30496343	30496396	.	-	.	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
Ledus.S1	AUGUSTUS	start_codon	30496394	30496396	.	-	0	transcript_id "Ledus.S1G374500.t1"; gene_id "Ledus.S1G374500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11770.t1 is derived from g5389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6680875	6681207	.	-	.	Ledus.S4G092600
Ledus.S4	AUGUSTUS	transcript	6680875	6681207	.	-	.	transcript_id "Ledus.S4G092600.t1"; gene_id "Ledus.S4G092600"
Ledus.S4	AUGUSTUS	stop_codon	6680872	6680874	.	-	0	transcript_id "Ledus.S4G092600.t1"; gene_id "Ledus.S4G092600"
Ledus.S4	AUGUSTUS	CDS	6680875	6681207	0.03	-	0	transcript_id "Ledus.S4G092600.t1"; gene_id "Ledus.S4G092600"
Ledus.S4	AUGUSTUS	exon	6680875	6681207	.	-	.	transcript_id "Ledus.S4G092600.t1"; gene_id "Ledus.S4G092600"
Ledus.S4	AUGUSTUS	start_codon	6681205	6681207	.	-	0	transcript_id "Ledus.S4G092600.t1"; gene_id "Ledus.S4G092600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7523.t1 is derived from g12194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3590970	3593889	.	-	.	Ledus.S5G030100
Ledus.S5	AUGUSTUS	transcript	3590970	3593889	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	stop_codon	3590967	3590969	.	-	0	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	CDS	3590970	3591242	1	-	0	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	exon	3590970	3591242	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	intron	3591243	3591366	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	CDS	3591367	3591951	1	-	0	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	exon	3591367	3591951	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	intron	3591952	3592046	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	CDS	3592047	3592404	0.69	-	1	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	exon	3592047	3592404	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	intron	3592405	3592521	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	CDS	3592522	3592820	0.84	-	0	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	exon	3592522	3592820	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	intron	3592821	3593015	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	CDS	3593016	3593071	1	-	2	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	exon	3593016	3593071	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	intron	3593072	3593152	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	CDS	3593153	3593309	1	-	0	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	exon	3593153	3593309	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	intron	3593310	3593389	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	CDS	3593390	3593446	1	-	0	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	exon	3593390	3593446	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	intron	3593447	3593585	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	CDS	3593586	3593617	1	-	2	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	exon	3593586	3593617	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	intron	3593618	3593747	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	CDS	3593748	3593889	0.22	-	0	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	exon	3593748	3593889	.	-	.	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
Ledus.S5	AUGUSTUS	start_codon	3593887	3593889	.	-	0	transcript_id "Ledus.S5G030100.t1"; gene_id "Ledus.S5G030100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11567.t1 is derived from g5185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5323408	5323875	.	+	.	Ledus.S4G072300
Ledus.S4	AUGUSTUS	transcript	5323408	5323875	.	+	.	transcript_id "Ledus.S4G072300.t1"; gene_id "Ledus.S4G072300"
Ledus.S4	AUGUSTUS	start_codon	5323408	5323410	.	+	0	transcript_id "Ledus.S4G072300.t1"; gene_id "Ledus.S4G072300"
Ledus.S4	AUGUSTUS	CDS	5323408	5323875	0.78	+	0	transcript_id "Ledus.S4G072300.t1"; gene_id "Ledus.S4G072300"
Ledus.S4	AUGUSTUS	exon	5323408	5323875	.	+	.	transcript_id "Ledus.S4G072300.t1"; gene_id "Ledus.S4G072300"
Ledus.S4	AUGUSTUS	stop_codon	5323876	5323878	.	+	0	transcript_id "Ledus.S4G072300.t1"; gene_id "Ledus.S4G072300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2744.t1 is derived from g178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2886812	2887117	.	-	.	Ledus.S1G016500
Ledus.S1	AUGUSTUS	transcript	2886812	2887117	.	-	.	transcript_id "Ledus.S1G016500.t1"; gene_id "Ledus.S1G016500"
Ledus.S1	AUGUSTUS	stop_codon	2886809	2886811	.	-	0	transcript_id "Ledus.S1G016500.t1"; gene_id "Ledus.S1G016500"
Ledus.S1	AUGUSTUS	CDS	2886812	2887117	0.95	-	0	transcript_id "Ledus.S1G016500.t1"; gene_id "Ledus.S1G016500"
Ledus.S1	AUGUSTUS	exon	2886812	2887117	.	-	.	transcript_id "Ledus.S1G016500.t1"; gene_id "Ledus.S1G016500"
Ledus.S1	AUGUSTUS	start_codon	2887115	2887117	.	-	0	transcript_id "Ledus.S1G016500.t1"; gene_id "Ledus.S1G016500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5855.t1 is derived from g3297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27333800	27337814	.	-	.	Ledus.S1G327600
Ledus.S1	AUGUSTUS	transcript	27333800	27337814	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	stop_codon	27333797	27333799	.	-	0	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27333800	27333858	0.96	-	2	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27333800	27333858	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27333859	27333966	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27333967	27334041	0.96	-	2	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27333967	27334041	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27334042	27334130	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27334131	27334241	1	-	2	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27334131	27334241	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27334242	27334336	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27334337	27334397	1	-	0	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27334337	27334397	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27334398	27334487	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27334488	27334613	1	-	0	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27334488	27334613	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27334614	27334721	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27334722	27334802	1	-	0	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27334722	27334802	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27334803	27334882	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27334883	27334952	1	-	1	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27334883	27334952	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27334953	27335044	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27335045	27335133	1	-	0	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27335045	27335133	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27335134	27335312	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27335313	27335424	1	-	1	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27335313	27335424	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27335425	27335591	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27335592	27335642	1	-	1	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27335592	27335642	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27335643	27335782	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27335783	27335853	1	-	0	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27335783	27335853	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27335854	27335961	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27335962	27336021	0.85	-	0	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27335962	27336021	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27336022	27336138	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27336139	27336262	1	-	1	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27336139	27336262	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27336263	27336522	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27336523	27336623	1	-	0	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27336523	27336623	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27336624	27336918	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27336919	27337029	1	-	0	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27336919	27337029	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27337030	27337113	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27337114	27337149	1	-	0	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27337114	27337149	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27337150	27337293	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27337294	27337439	1	-	2	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27337294	27337439	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	intron	27337440	27337804	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	CDS	27337805	27337814	1	-	0	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	exon	27337805	27337814	.	-	.	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
Ledus.S1	AUGUSTUS	start_codon	27337812	27337814	.	-	0	transcript_id "Ledus.S1G327600.t1"; gene_id "Ledus.S1G327600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2052.t1 is derived from g8915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14338805	14341190	.	+	.	Ledus.S2G193400
Ledus.S2	AUGUSTUS	transcript	14338805	14341190	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	start_codon	14338805	14338807	.	+	0	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	CDS	14338805	14339114	0.63	+	0	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	exon	14338805	14339114	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	intron	14339115	14339282	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	CDS	14339283	14339425	0.97	+	2	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	exon	14339283	14339425	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	intron	14339426	14339531	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	CDS	14339532	14339803	1	+	0	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	exon	14339532	14339803	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	intron	14339804	14339957	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	CDS	14339958	14340112	1	+	1	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	exon	14339958	14340112	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	intron	14340113	14340403	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	CDS	14340404	14340669	1	+	2	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	exon	14340404	14340669	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	intron	14340670	14340762	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	CDS	14340763	14340825	0.95	+	0	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	exon	14340763	14340825	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	intron	14340826	14340926	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	CDS	14340927	14341190	1	+	0	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	exon	14340927	14341190	.	+	.	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
Ledus.S2	AUGUSTUS	stop_codon	14341191	14341193	.	+	0	transcript_id "Ledus.S2G193400.t1"; gene_id "Ledus.S2G193400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10396.t1 is derived from g11426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14792443	14792937	.	+	.	Ledus.S3G187300
Ledus.S3	AUGUSTUS	transcript	14792443	14792937	.	+	.	transcript_id "Ledus.S3G187300.t1"; gene_id "Ledus.S3G187300"
Ledus.S3	AUGUSTUS	start_codon	14792443	14792445	.	+	0	transcript_id "Ledus.S3G187300.t1"; gene_id "Ledus.S3G187300"
Ledus.S3	AUGUSTUS	CDS	14792443	14792836	0.91	+	0	transcript_id "Ledus.S3G187300.t1"; gene_id "Ledus.S3G187300"
Ledus.S3	AUGUSTUS	exon	14792443	14792836	.	+	.	transcript_id "Ledus.S3G187300.t1"; gene_id "Ledus.S3G187300"
Ledus.S3	AUGUSTUS	intron	14792837	14792926	.	+	.	transcript_id "Ledus.S3G187300.t1"; gene_id "Ledus.S3G187300"
Ledus.S3	AUGUSTUS	CDS	14792927	14792937	0.99	+	2	transcript_id "Ledus.S3G187300.t1"; gene_id "Ledus.S3G187300"
Ledus.S3	AUGUSTUS	exon	14792927	14792937	.	+	.	transcript_id "Ledus.S3G187300.t1"; gene_id "Ledus.S3G187300"
Ledus.S3	AUGUSTUS	stop_codon	14792938	14792940	.	+	0	transcript_id "Ledus.S3G187300.t1"; gene_id "Ledus.S3G187300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8158.t1 is derived from g12829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9492199	9496522	.	+	.	Ledus.S5G093600
Ledus.S5	AUGUSTUS	transcript	9492199	9496522	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	start_codon	9492199	9492201	.	+	0	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9492199	9492397	0.96	+	0	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9492199	9492397	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9492398	9492479	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9492480	9492609	1	+	2	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9492480	9492609	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9492610	9492702	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9492703	9492879	1	+	1	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9492703	9492879	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9492880	9492972	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9492973	9493044	1	+	1	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9492973	9493044	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9493045	9493151	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9493152	9493223	1	+	1	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9493152	9493223	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9493224	9493300	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9493301	9493369	1	+	1	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9493301	9493369	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9493370	9493455	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9493456	9493530	1	+	1	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9493456	9493530	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9493531	9493630	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9493631	9493702	1	+	1	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9493631	9493702	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9493703	9493786	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9493787	9493858	1	+	1	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9493787	9493858	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9493859	9493957	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9493958	9494032	1	+	1	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9493958	9494032	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9494033	9494104	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9494105	9494176	1	+	1	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9494105	9494176	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9494177	9494434	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9494435	9494661	1	+	1	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9494435	9494661	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9494662	9494737	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9494738	9494896	0.99	+	2	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9494738	9494896	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9494897	9494974	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9494975	9495249	0.99	+	2	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9494975	9495249	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9495250	9495337	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9495338	9495389	1	+	0	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9495338	9495389	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9495390	9495471	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9495472	9495563	1	+	2	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9495472	9495563	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9495564	9495653	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9495654	9495781	1	+	0	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9495654	9495781	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9495782	9495871	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9495872	9496016	1	+	1	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9495872	9496016	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9496017	9496112	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9496113	9496259	1	+	0	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9496113	9496259	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9496260	9496357	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9496358	9496522	1	+	0	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9496358	9496522	.	+	.	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	stop_codon	9496523	9496525	.	+	0	transcript_id "Ledus.S5G093600.t1"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	transcript	9492199	9496522	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	start_codon	9492199	9492201	.	+	0	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9492199	9492397	0.93	+	0	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9492199	9492397	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9492398	9492479	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9492480	9492609	1	+	2	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9492480	9492609	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9492610	9492702	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9492703	9492879	1	+	1	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9492703	9492879	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9492880	9492972	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9492973	9493044	1	+	1	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9492973	9493044	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9493045	9493117	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9493118	9493138	0.79	+	1	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9493118	9493138	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9493139	9493300	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9493301	9493369	0.99	+	1	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9493301	9493369	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9493370	9493455	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9493456	9493530	1	+	1	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9493456	9493530	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9493531	9493630	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9493631	9493702	1	+	1	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9493631	9493702	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9493703	9493786	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9493787	9493858	1	+	1	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9493787	9493858	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9493859	9493957	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9493958	9494032	1	+	1	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9493958	9494032	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9494033	9494104	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9494105	9494176	1	+	1	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9494105	9494176	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9494177	9494434	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9494435	9494661	1	+	1	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9494435	9494661	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9494662	9494737	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9494738	9494896	1	+	2	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9494738	9494896	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9494897	9494974	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9494975	9495249	1	+	2	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9494975	9495249	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9495250	9495337	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9495338	9495389	1	+	0	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9495338	9495389	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9495390	9495471	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9495472	9495563	1	+	2	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9495472	9495563	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9495564	9495653	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9495654	9495781	1	+	0	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9495654	9495781	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9495782	9495871	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9495872	9496016	1	+	1	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9495872	9496016	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9496017	9496112	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9496113	9496259	1	+	0	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9496113	9496259	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	intron	9496260	9496357	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	CDS	9496358	9496522	1	+	0	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	exon	9496358	9496522	.	+	.	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
Ledus.S5	AUGUSTUS	stop_codon	9496523	9496525	.	+	0	transcript_id "Ledus.S5G093600.t2"; gene_id "Ledus.S5G093600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9880.t1 is derived from g10910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10909222	10909864	.	+	.	Ledus.S3G135700
Ledus.S3	AUGUSTUS	transcript	10909222	10909864	.	+	.	transcript_id "Ledus.S3G135700.t1"; gene_id "Ledus.S3G135700"
Ledus.S3	AUGUSTUS	start_codon	10909222	10909224	.	+	0	transcript_id "Ledus.S3G135700.t1"; gene_id "Ledus.S3G135700"
Ledus.S3	AUGUSTUS	CDS	10909222	10909529	0.41	+	0	transcript_id "Ledus.S3G135700.t1"; gene_id "Ledus.S3G135700"
Ledus.S3	AUGUSTUS	exon	10909222	10909529	.	+	.	transcript_id "Ledus.S3G135700.t1"; gene_id "Ledus.S3G135700"
Ledus.S3	AUGUSTUS	intron	10909530	10909623	.	+	.	transcript_id "Ledus.S3G135700.t1"; gene_id "Ledus.S3G135700"
Ledus.S3	AUGUSTUS	CDS	10909624	10909864	0.63	+	1	transcript_id "Ledus.S3G135700.t1"; gene_id "Ledus.S3G135700"
Ledus.S3	AUGUSTUS	exon	10909624	10909864	.	+	.	transcript_id "Ledus.S3G135700.t1"; gene_id "Ledus.S3G135700"
Ledus.S3	AUGUSTUS	stop_codon	10909865	10909867	.	+	0	transcript_id "Ledus.S3G135700.t1"; gene_id "Ledus.S3G135700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12938.t1 is derived from g4430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	453698	453967	.	+	.	Ledus.C9G004600
Ledus.C9	AUGUSTUS	transcript	453698	453967	.	+	.	transcript_id "Ledus.C9G004600.t1"; gene_id "Ledus.C9G004600"
Ledus.C9	AUGUSTUS	start_codon	453698	453700	.	+	0	transcript_id "Ledus.C9G004600.t1"; gene_id "Ledus.C9G004600"
Ledus.C9	AUGUSTUS	CDS	453698	453967	1	+	0	transcript_id "Ledus.C9G004600.t1"; gene_id "Ledus.C9G004600"
Ledus.C9	AUGUSTUS	exon	453698	453967	.	+	.	transcript_id "Ledus.C9G004600.t1"; gene_id "Ledus.C9G004600"
Ledus.C9	AUGUSTUS	stop_codon	453968	453970	.	+	0	transcript_id "Ledus.C9G004600.t1"; gene_id "Ledus.C9G004600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6676.t1 is derived from g4119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33080477	33080935	.	-	.	Ledus.S1G409700
Ledus.S1	AUGUSTUS	transcript	33080477	33080935	.	-	.	transcript_id "Ledus.S1G409700.t1"; gene_id "Ledus.S1G409700"
Ledus.S1	AUGUSTUS	stop_codon	33080474	33080476	.	-	0	transcript_id "Ledus.S1G409700.t1"; gene_id "Ledus.S1G409700"
Ledus.S1	AUGUSTUS	CDS	33080477	33080935	0.98	-	0	transcript_id "Ledus.S1G409700.t1"; gene_id "Ledus.S1G409700"
Ledus.S1	AUGUSTUS	exon	33080477	33080935	.	-	.	transcript_id "Ledus.S1G409700.t1"; gene_id "Ledus.S1G409700"
Ledus.S1	AUGUSTUS	start_codon	33080933	33080935	.	-	0	transcript_id "Ledus.S1G409700.t1"; gene_id "Ledus.S1G409700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10528.t1 is derived from g11558.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15945357	15948191	.	+	.	Ledus.S3G200500
Ledus.S3	AUGUSTUS	transcript	15945357	15946701	.	+	.	transcript_id "Ledus.S3G200500.t1"; gene_id "Ledus.S3G200500"
Ledus.S3	AUGUSTUS	start_codon	15945357	15945359	.	+	0	transcript_id "Ledus.S3G200500.t1"; gene_id "Ledus.S3G200500"
Ledus.S3	AUGUSTUS	CDS	15945357	15946519	0.6	+	0	transcript_id "Ledus.S3G200500.t1"; gene_id "Ledus.S3G200500"
Ledus.S3	AUGUSTUS	exon	15945357	15946519	.	+	.	transcript_id "Ledus.S3G200500.t1"; gene_id "Ledus.S3G200500"
Ledus.S3	AUGUSTUS	intron	15946520	15946652	.	+	.	transcript_id "Ledus.S3G200500.t1"; gene_id "Ledus.S3G200500"
Ledus.S3	AUGUSTUS	CDS	15946653	15946701	0.56	+	1	transcript_id "Ledus.S3G200500.t1"; gene_id "Ledus.S3G200500"
Ledus.S3	AUGUSTUS	exon	15946653	15946701	.	+	.	transcript_id "Ledus.S3G200500.t1"; gene_id "Ledus.S3G200500"
Ledus.S3	AUGUSTUS	stop_codon	15946702	15946704	.	+	0	transcript_id "Ledus.S3G200500.t1"; gene_id "Ledus.S3G200500"
Ledus.S3	AUGUSTUS	transcript	15945357	15948191	.	+	.	transcript_id "Ledus.S3G200500.t2"; gene_id "Ledus.S3G200500"
Ledus.S3	AUGUSTUS	start_codon	15945357	15945359	.	+	0	transcript_id "Ledus.S3G200500.t2"; gene_id "Ledus.S3G200500"
Ledus.S3	AUGUSTUS	CDS	15945357	15948191	0.62	+	0	transcript_id "Ledus.S3G200500.t2"; gene_id "Ledus.S3G200500"
Ledus.S3	AUGUSTUS	exon	15945357	15948191	.	+	.	transcript_id "Ledus.S3G200500.t2"; gene_id "Ledus.S3G200500"
Ledus.S3	AUGUSTUS	stop_codon	15948192	15948194	.	+	0	transcript_id "Ledus.S3G200500.t2"; gene_id "Ledus.S3G200500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13025.t1 is derived from g6835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3347488	3348108	.	-	.	Ledus.S6G008700
Ledus.S6	AUGUSTUS	transcript	3347488	3348108	.	-	.	transcript_id "Ledus.S6G008700.t1"; gene_id "Ledus.S6G008700"
Ledus.S6	AUGUSTUS	stop_codon	3347485	3347487	.	-	0	transcript_id "Ledus.S6G008700.t1"; gene_id "Ledus.S6G008700"
Ledus.S6	AUGUSTUS	CDS	3347488	3348108	0.73	-	0	transcript_id "Ledus.S6G008700.t1"; gene_id "Ledus.S6G008700"
Ledus.S6	AUGUSTUS	exon	3347488	3348108	.	-	.	transcript_id "Ledus.S6G008700.t1"; gene_id "Ledus.S6G008700"
Ledus.S6	AUGUSTUS	start_codon	3348106	3348108	.	-	0	transcript_id "Ledus.S6G008700.t1"; gene_id "Ledus.S6G008700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10959.t1 is derived from g4577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	907770	910664	.	+	.	Ledus.S4G011500
Ledus.S4	AUGUSTUS	transcript	907770	910664	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	start_codon	907770	907772	.	+	0	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	CDS	907770	907846	1	+	0	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	exon	907770	907846	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	intron	907847	907930	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	CDS	907931	908226	1	+	1	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	exon	907931	908226	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	intron	908227	908307	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	CDS	908308	908614	1	+	2	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	exon	908308	908614	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	intron	908615	908904	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	CDS	908905	909466	0.96	+	1	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	exon	908905	909466	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	intron	909467	909646	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	CDS	909647	909700	0.84	+	0	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	exon	909647	909700	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	intron	909701	909778	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	CDS	909779	909822	0.83	+	0	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	exon	909779	909822	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	intron	909823	910054	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	CDS	910055	910285	0.29	+	1	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	exon	910055	910285	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	intron	910286	910492	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	CDS	910493	910547	1	+	1	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	exon	910493	910547	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	intron	910548	910640	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	CDS	910641	910664	1	+	0	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	exon	910641	910664	.	+	.	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
Ledus.S4	AUGUSTUS	stop_codon	910665	910667	.	+	0	transcript_id "Ledus.S4G011500.t1"; gene_id "Ledus.S4G011500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6296.t1 is derived from g3739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30227699	30228001	.	+	.	Ledus.S1G371700
Ledus.S1	AUGUSTUS	transcript	30227699	30228001	.	+	.	transcript_id "Ledus.S1G371700.t1"; gene_id "Ledus.S1G371700"
Ledus.S1	AUGUSTUS	start_codon	30227699	30227701	.	+	0	transcript_id "Ledus.S1G371700.t1"; gene_id "Ledus.S1G371700"
Ledus.S1	AUGUSTUS	CDS	30227699	30228001	1	+	0	transcript_id "Ledus.S1G371700.t1"; gene_id "Ledus.S1G371700"
Ledus.S1	AUGUSTUS	exon	30227699	30228001	.	+	.	transcript_id "Ledus.S1G371700.t1"; gene_id "Ledus.S1G371700"
Ledus.S1	AUGUSTUS	stop_codon	30228002	30228004	.	+	0	transcript_id "Ledus.S1G371700.t1"; gene_id "Ledus.S1G371700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg731.t1 is derived from g7592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4577022	4578932	.	+	.	Ledus.S2G061300
Ledus.S2	AUGUSTUS	transcript	4577022	4578932	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	start_codon	4577022	4577024	.	+	0	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	CDS	4577022	4577174	0.95	+	0	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	exon	4577022	4577174	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	intron	4577175	4577272	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	CDS	4577273	4577410	1	+	0	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	exon	4577273	4577410	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	intron	4577411	4577483	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	CDS	4577484	4577562	1	+	0	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	exon	4577484	4577562	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	intron	4577563	4577657	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	CDS	4577658	4577741	0.57	+	2	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	exon	4577658	4577741	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	intron	4577742	4577847	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	CDS	4577848	4577923	0.57	+	2	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	exon	4577848	4577923	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	intron	4577924	4578010	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	CDS	4578011	4578085	1	+	1	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	exon	4578011	4578085	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	intron	4578086	4578506	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	CDS	4578507	4578512	0.62	+	1	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	exon	4578507	4578512	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	intron	4578513	4578675	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	CDS	4578676	4578804	0.46	+	1	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	exon	4578676	4578804	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	intron	4578805	4578898	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	CDS	4578899	4578932	0.83	+	1	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	exon	4578899	4578932	.	+	.	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
Ledus.S2	AUGUSTUS	stop_codon	4578933	4578935	.	+	0	transcript_id "Ledus.S2G061300.t1"; gene_id "Ledus.S2G061300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7139.t1 is derived from g6670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1726109	1728687	.	+	.	Ledus.C7G020000
Ledus.C7	AUGUSTUS	transcript	1726109	1728687	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	start_codon	1726109	1726111	.	+	0	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	CDS	1726109	1726408	0.93	+	0	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	exon	1726109	1726408	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	intron	1726409	1726953	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	CDS	1726954	1727068	1	+	0	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	exon	1726954	1727068	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	intron	1727069	1727179	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	CDS	1727180	1727352	0.99	+	2	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	exon	1727180	1727352	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	intron	1727353	1727491	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	CDS	1727492	1727569	1	+	0	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	exon	1727492	1727569	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	intron	1727570	1727782	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	CDS	1727783	1727858	1	+	0	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	exon	1727783	1727858	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	intron	1727859	1727960	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	CDS	1727961	1728062	1	+	2	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	exon	1727961	1728062	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	intron	1728063	1728253	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	CDS	1728254	1728326	1	+	2	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	exon	1728254	1728326	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	intron	1728327	1728674	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	CDS	1728675	1728687	1	+	1	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	exon	1728675	1728687	.	+	.	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
Ledus.C7	AUGUSTUS	stop_codon	1728688	1728690	.	+	0	transcript_id "Ledus.C7G020000.t1"; gene_id "Ledus.C7G020000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg434.t1 is derived from g7295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2492201	2495935	.	-	.	Ledus.S2G031600
Ledus.S2	AUGUSTUS	transcript	2492201	2495935	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	stop_codon	2492198	2492200	.	-	0	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	CDS	2492201	2492356	0.51	-	0	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	exon	2492201	2492356	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	intron	2492357	2492433	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	CDS	2492434	2492544	1	-	0	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	exon	2492434	2492544	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	intron	2492545	2492655	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	CDS	2492656	2492778	1	-	0	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	exon	2492656	2492778	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	intron	2492779	2492889	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	CDS	2492890	2493075	1	-	0	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	exon	2492890	2493075	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	intron	2493076	2493201	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	CDS	2493202	2493372	1	-	0	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	exon	2493202	2493372	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	intron	2493373	2493529	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	CDS	2493530	2494015	1	-	0	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	exon	2493530	2494015	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	intron	2494016	2494143	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	CDS	2494144	2495146	1	-	1	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	exon	2494144	2495146	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	intron	2495147	2495242	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	CDS	2495243	2495521	1	-	1	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	exon	2495243	2495521	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	intron	2495522	2495618	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	CDS	2495619	2495755	1	-	0	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	exon	2495619	2495755	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	intron	2495756	2495902	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	CDS	2495903	2495935	0.49	-	0	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	exon	2495903	2495935	.	-	.	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
Ledus.S2	AUGUSTUS	start_codon	2495933	2495935	.	-	0	transcript_id "Ledus.S2G031600.t1"; gene_id "Ledus.S2G031600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6312.t1 is derived from g3755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30444431	30445408	.	-	.	Ledus.S1G373300
Ledus.S1	AUGUSTUS	transcript	30444431	30445408	.	-	.	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	stop_codon	30444428	30444430	.	-	0	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	CDS	30444431	30444511	0.52	-	0	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	exon	30444431	30444511	.	-	.	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	intron	30444512	30444615	.	-	.	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	CDS	30444616	30444711	1	-	0	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	exon	30444616	30444711	.	-	.	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	intron	30444712	30444835	.	-	.	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	CDS	30444836	30444988	1	-	0	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	exon	30444836	30444988	.	-	.	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	intron	30444989	30445074	.	-	.	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	CDS	30445075	30445149	0.95	-	0	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	exon	30445075	30445149	.	-	.	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	intron	30445150	30445333	.	-	.	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	CDS	30445334	30445408	0.81	-	0	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	exon	30445334	30445408	.	-	.	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
Ledus.S1	AUGUSTUS	start_codon	30445406	30445408	.	-	0	transcript_id "Ledus.S1G373300.t1"; gene_id "Ledus.S1G373300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2488.t1 is derived from g9351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18446826	18447347	.	-	.	Ledus.S2G237000
Ledus.S2	AUGUSTUS	transcript	18446826	18447347	.	-	.	transcript_id "Ledus.S2G237000.t1"; gene_id "Ledus.S2G237000"
Ledus.S2	AUGUSTUS	stop_codon	18446823	18446825	.	-	0	transcript_id "Ledus.S2G237000.t1"; gene_id "Ledus.S2G237000"
Ledus.S2	AUGUSTUS	CDS	18446826	18447347	0.79	-	0	transcript_id "Ledus.S2G237000.t1"; gene_id "Ledus.S2G237000"
Ledus.S2	AUGUSTUS	exon	18446826	18447347	.	-	.	transcript_id "Ledus.S2G237000.t1"; gene_id "Ledus.S2G237000"
Ledus.S2	AUGUSTUS	start_codon	18447345	18447347	.	-	0	transcript_id "Ledus.S2G237000.t1"; gene_id "Ledus.S2G237000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7226.t1 is derived from g11897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	164255	165963	.	-	.	Ledus.S5G000400
Ledus.S5	AUGUSTUS	transcript	164255	165963	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	stop_codon	164252	164254	.	-	0	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	CDS	164255	164362	1	-	0	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	exon	164255	164362	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	intron	164363	164459	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	CDS	164460	164547	1	-	1	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	exon	164460	164547	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	intron	164548	164641	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	CDS	164642	164761	1	-	1	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	exon	164642	164761	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	intron	164762	164851	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	CDS	164852	164928	1	-	0	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	exon	164852	164928	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	intron	164929	165002	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	CDS	165003	165175	1	-	2	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	exon	165003	165175	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	intron	165176	165266	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	CDS	165267	165419	1	-	2	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	exon	165267	165419	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	intron	165420	165508	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	CDS	165509	165645	1	-	1	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	exon	165509	165645	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	intron	165646	165718	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	CDS	165719	165963	0.96	-	0	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	exon	165719	165963	.	-	.	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
Ledus.S5	AUGUSTUS	start_codon	165961	165963	.	-	0	transcript_id "Ledus.S5G000400.t1"; gene_id "Ledus.S5G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9276.t1 is derived from g10306.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5748850	5752845	.	-	.	Ledus.S3G075300
Ledus.S3	AUGUSTUS	transcript	5748850	5752845	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	stop_codon	5748847	5748849	.	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5748850	5748993	1	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5748850	5748993	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5748994	5749133	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5749134	5749214	1	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5749134	5749214	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5749215	5749326	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5749327	5749440	1	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5749327	5749440	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5749441	5749532	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5749533	5749656	1	-	1	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5749533	5749656	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5749657	5749812	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5749813	5749928	1	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5749813	5749928	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5749929	5750043	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5750044	5750139	0.94	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5750044	5750139	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5750140	5750233	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5750234	5750392	1	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5750234	5750392	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5750393	5750527	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5750528	5750577	1	-	2	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5750528	5750577	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5750578	5750709	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5750710	5750838	0.75	-	2	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5750710	5750838	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5750839	5750955	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5750956	5751067	0.98	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5750956	5751067	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5751068	5751186	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5751187	5751210	1	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5751187	5751210	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5751211	5751301	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5751302	5751436	1	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5751302	5751436	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5751437	5751642	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5751643	5751693	1	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5751643	5751693	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5751694	5751857	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5751858	5752025	1	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5751858	5752025	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5752026	5752181	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5752182	5752436	1	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5752182	5752436	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	intron	5752437	5752770	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	CDS	5752771	5752845	0.69	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	exon	5752771	5752845	.	-	.	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
Ledus.S3	AUGUSTUS	start_codon	5752843	5752845	.	-	0	transcript_id "Ledus.S3G075300.t1"; gene_id "Ledus.S3G075300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg791.t1 is derived from g7652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5126020	5126644	.	-	.	Ledus.S2G067300
Ledus.S2	AUGUSTUS	transcript	5126020	5126644	.	-	.	transcript_id "Ledus.S2G067300.t1"; gene_id "Ledus.S2G067300"
Ledus.S2	AUGUSTUS	stop_codon	5126017	5126019	.	-	0	transcript_id "Ledus.S2G067300.t1"; gene_id "Ledus.S2G067300"
Ledus.S2	AUGUSTUS	CDS	5126020	5126544	0.87	-	0	transcript_id "Ledus.S2G067300.t1"; gene_id "Ledus.S2G067300"
Ledus.S2	AUGUSTUS	exon	5126020	5126544	.	-	.	transcript_id "Ledus.S2G067300.t1"; gene_id "Ledus.S2G067300"
Ledus.S2	AUGUSTUS	intron	5126545	5126629	.	-	.	transcript_id "Ledus.S2G067300.t1"; gene_id "Ledus.S2G067300"
Ledus.S2	AUGUSTUS	CDS	5126630	5126644	0.81	-	0	transcript_id "Ledus.S2G067300.t1"; gene_id "Ledus.S2G067300"
Ledus.S2	AUGUSTUS	exon	5126630	5126644	.	-	.	transcript_id "Ledus.S2G067300.t1"; gene_id "Ledus.S2G067300"
Ledus.S2	AUGUSTUS	start_codon	5126642	5126644	.	-	0	transcript_id "Ledus.S2G067300.t1"; gene_id "Ledus.S2G067300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3144.t1 is derived from g579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6242912	6243373	.	-	.	Ledus.S1G056500
Ledus.S1	AUGUSTUS	transcript	6242912	6243373	.	-	.	transcript_id "Ledus.S1G056500.t1"; gene_id "Ledus.S1G056500"
Ledus.S1	AUGUSTUS	stop_codon	6242909	6242911	.	-	0	transcript_id "Ledus.S1G056500.t1"; gene_id "Ledus.S1G056500"
Ledus.S1	AUGUSTUS	CDS	6242912	6243373	0.72	-	0	transcript_id "Ledus.S1G056500.t1"; gene_id "Ledus.S1G056500"
Ledus.S1	AUGUSTUS	exon	6242912	6243373	.	-	.	transcript_id "Ledus.S1G056500.t1"; gene_id "Ledus.S1G056500"
Ledus.S1	AUGUSTUS	start_codon	6243371	6243373	.	-	0	transcript_id "Ledus.S1G056500.t1"; gene_id "Ledus.S1G056500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6595.t1 is derived from g4038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32575386	32577425	.	-	.	Ledus.S1G401600
Ledus.S1	AUGUSTUS	transcript	32575386	32577425	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	stop_codon	32575383	32575385	.	-	0	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	CDS	32575386	32575650	1	-	1	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	exon	32575386	32575650	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	intron	32575651	32575728	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	CDS	32575729	32575987	1	-	2	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	exon	32575729	32575987	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	intron	32575988	32576069	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	CDS	32576070	32576450	0.73	-	2	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	exon	32576070	32576450	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	intron	32576451	32576552	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	CDS	32576553	32576685	0.97	-	0	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	exon	32576553	32576685	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	intron	32576686	32576765	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	CDS	32576766	32576972	1	-	0	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	exon	32576766	32576972	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	intron	32576973	32577052	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	CDS	32577053	32577233	1	-	1	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	exon	32577053	32577233	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	intron	32577234	32577297	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	CDS	32577298	32577425	0.29	-	0	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	exon	32577298	32577425	.	-	.	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
Ledus.S1	AUGUSTUS	start_codon	32577423	32577425	.	-	0	transcript_id "Ledus.S1G401600.t1"; gene_id "Ledus.S1G401600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6996.t1 is derived from g6527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	632392	636219	.	-	.	Ledus.C7G005700
Ledus.C7	AUGUSTUS	transcript	632392	636219	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	stop_codon	632389	632391	.	-	0	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	CDS	632392	632523	0.96	-	0	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	exon	632392	632523	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	intron	632524	632624	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	CDS	632625	632750	0.96	-	0	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	exon	632625	632750	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	intron	632751	632954	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	CDS	632955	633071	0.98	-	0	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	exon	632955	633071	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	intron	633072	633188	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	CDS	633189	633272	0.97	-	0	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	exon	633189	633272	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	intron	633273	633386	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	CDS	633387	634324	0.97	-	2	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	exon	633387	634324	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	intron	634325	634426	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	CDS	634427	634658	1	-	0	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	exon	634427	634658	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	intron	634659	634843	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	CDS	634844	635131	1	-	0	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	exon	634844	635131	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	intron	635132	635225	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	CDS	635226	635282	1	-	0	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	exon	635226	635282	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	intron	635283	635413	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	CDS	635414	635455	1	-	0	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	exon	635414	635455	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	intron	635456	635588	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	CDS	635589	635679	0.95	-	1	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	exon	635589	635679	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	intron	635680	635781	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	CDS	635782	635970	0.92	-	1	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	exon	635782	635970	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	intron	635971	636199	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	CDS	636200	636219	0.59	-	0	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	exon	636200	636219	.	-	.	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
Ledus.C7	AUGUSTUS	start_codon	636217	636219	.	-	0	transcript_id "Ledus.C7G005700.t1"; gene_id "Ledus.C7G005700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1800.t1 is derived from g8663.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12674363	12674994	.	+	.	Ledus.S2G168200
Ledus.S2	AUGUSTUS	transcript	12674363	12674994	.	+	.	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	start_codon	12674363	12674365	.	+	0	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	CDS	12674363	12674401	0.79	+	0	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	exon	12674363	12674401	.	+	.	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	intron	12674402	12674610	.	+	.	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	CDS	12674611	12674632	1	+	0	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	exon	12674611	12674632	.	+	.	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	intron	12674633	12674722	.	+	.	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	CDS	12674723	12674787	1	+	2	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	exon	12674723	12674787	.	+	.	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	intron	12674788	12674859	.	+	.	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	CDS	12674860	12674994	1	+	0	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	exon	12674860	12674994	.	+	.	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	stop_codon	12674995	12674997	.	+	0	transcript_id "Ledus.S2G168200.t1"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	transcript	12674363	12674994	.	+	.	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	start_codon	12674363	12674365	.	+	0	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	CDS	12674363	12674401	0.74	+	0	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	exon	12674363	12674401	.	+	.	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	intron	12674402	12674610	.	+	.	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	CDS	12674611	12674665	0.89	+	0	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	exon	12674611	12674665	.	+	.	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	intron	12674666	12674722	.	+	.	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	CDS	12674723	12674787	0.93	+	2	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	exon	12674723	12674787	.	+	.	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	intron	12674788	12674859	.	+	.	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	CDS	12674860	12674994	1	+	0	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	exon	12674860	12674994	.	+	.	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
Ledus.S2	AUGUSTUS	stop_codon	12674995	12674997	.	+	0	transcript_id "Ledus.S2G168200.t2"; gene_id "Ledus.S2G168200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3715.t1 is derived from g1151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11123960	11124244	.	-	.	Ledus.S1G113600
Ledus.S1	AUGUSTUS	transcript	11123960	11124244	.	-	.	transcript_id "Ledus.S1G113600.t1"; gene_id "Ledus.S1G113600"
Ledus.S1	AUGUSTUS	stop_codon	11123957	11123959	.	-	0	transcript_id "Ledus.S1G113600.t1"; gene_id "Ledus.S1G113600"
Ledus.S1	AUGUSTUS	CDS	11123960	11124244	0.59	-	0	transcript_id "Ledus.S1G113600.t1"; gene_id "Ledus.S1G113600"
Ledus.S1	AUGUSTUS	exon	11123960	11124244	.	-	.	transcript_id "Ledus.S1G113600.t1"; gene_id "Ledus.S1G113600"
Ledus.S1	AUGUSTUS	start_codon	11124242	11124244	.	-	0	transcript_id "Ledus.S1G113600.t1"; gene_id "Ledus.S1G113600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2682.t1 is derived from g115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1770606	1771526	.	+	.	Ledus.S1G010300
Ledus.S1	AUGUSTUS	transcript	1770606	1771526	.	+	.	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	start_codon	1770606	1770608	.	+	0	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	CDS	1770606	1770832	0.99	+	0	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	exon	1770606	1770832	.	+	.	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	intron	1770833	1770905	.	+	.	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	CDS	1770906	1771042	1	+	1	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	exon	1770906	1771042	.	+	.	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	intron	1771043	1771121	.	+	.	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	CDS	1771122	1771258	1	+	2	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	exon	1771122	1771258	.	+	.	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	intron	1771259	1771352	.	+	.	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	CDS	1771353	1771526	1	+	0	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	exon	1771353	1771526	.	+	.	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
Ledus.S1	AUGUSTUS	stop_codon	1771527	1771529	.	+	0	transcript_id "Ledus.S1G010300.t1"; gene_id "Ledus.S1G010300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1370.t1 is derived from g8231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9549533	9549748	.	-	.	Ledus.S2G125200
Ledus.S2	AUGUSTUS	transcript	9549533	9549748	.	-	.	transcript_id "Ledus.S2G125200.t1"; gene_id "Ledus.S2G125200"
Ledus.S2	AUGUSTUS	stop_codon	9549530	9549532	.	-	0	transcript_id "Ledus.S2G125200.t1"; gene_id "Ledus.S2G125200"
Ledus.S2	AUGUSTUS	CDS	9549533	9549748	0.86	-	0	transcript_id "Ledus.S2G125200.t1"; gene_id "Ledus.S2G125200"
Ledus.S2	AUGUSTUS	exon	9549533	9549748	.	-	.	transcript_id "Ledus.S2G125200.t1"; gene_id "Ledus.S2G125200"
Ledus.S2	AUGUSTUS	start_codon	9549746	9549748	.	-	0	transcript_id "Ledus.S2G125200.t1"; gene_id "Ledus.S2G125200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6062.t1 is derived from g3505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28793401	28797301	.	-	.	Ledus.S1G348300
Ledus.S1	AUGUSTUS	transcript	28793401	28797301	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	stop_codon	28793398	28793400	.	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28793401	28793856	0.99	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28793401	28793856	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28793857	28793951	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28793952	28794059	1	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28793952	28794059	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28794060	28794144	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28794145	28794252	1	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28794145	28794252	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28794253	28794327	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28794328	28794393	1	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28794328	28794393	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28794394	28794552	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28794553	28794631	1	-	1	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28794553	28794631	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28794632	28794716	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28794717	28794849	1	-	2	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28794717	28794849	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28794850	28794948	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28794949	28795093	1	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28794949	28795093	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28795094	28795190	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28795191	28795301	1	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28795191	28795301	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28795302	28795411	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28795412	28795530	1	-	2	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28795412	28795530	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28795531	28795632	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28795633	28795804	0.92	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28795633	28795804	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28795805	28795908	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28795909	28796008	0.96	-	1	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28795909	28796008	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28796009	28796137	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28796138	28796265	1	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28796138	28796265	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28796266	28796392	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28796393	28796467	1	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28796393	28796467	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28796468	28796558	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28796559	28796594	1	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28796559	28796594	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28796595	28796746	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28796747	28796824	1	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28796747	28796824	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	intron	28796825	28797265	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	CDS	28797266	28797301	0.94	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	exon	28797266	28797301	.	-	.	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
Ledus.S1	AUGUSTUS	start_codon	28797299	28797301	.	-	0	transcript_id "Ledus.S1G348300.t1"; gene_id "Ledus.S1G348300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1857.t1 is derived from g8720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12967588	12968703	.	+	.	Ledus.S2G173900
Ledus.S2	AUGUSTUS	transcript	12967588	12968703	.	+	.	transcript_id "Ledus.S2G173900.t1"; gene_id "Ledus.S2G173900"
Ledus.S2	AUGUSTUS	start_codon	12967588	12967590	.	+	0	transcript_id "Ledus.S2G173900.t1"; gene_id "Ledus.S2G173900"
Ledus.S2	AUGUSTUS	CDS	12967588	12968703	0.89	+	0	transcript_id "Ledus.S2G173900.t1"; gene_id "Ledus.S2G173900"
Ledus.S2	AUGUSTUS	exon	12967588	12968703	.	+	.	transcript_id "Ledus.S2G173900.t1"; gene_id "Ledus.S2G173900"
Ledus.S2	AUGUSTUS	stop_codon	12968704	12968706	.	+	0	transcript_id "Ledus.S2G173900.t1"; gene_id "Ledus.S2G173900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6562.t1 is derived from g4005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32411905	32412565	.	+	.	Ledus.S1G398300
Ledus.S1	AUGUSTUS	transcript	32411905	32412565	.	+	.	transcript_id "Ledus.S1G398300.t1"; gene_id "Ledus.S1G398300"
Ledus.S1	AUGUSTUS	start_codon	32411905	32411907	.	+	0	transcript_id "Ledus.S1G398300.t1"; gene_id "Ledus.S1G398300"
Ledus.S1	AUGUSTUS	CDS	32411905	32412055	0.81	+	0	transcript_id "Ledus.S1G398300.t1"; gene_id "Ledus.S1G398300"
Ledus.S1	AUGUSTUS	exon	32411905	32412055	.	+	.	transcript_id "Ledus.S1G398300.t1"; gene_id "Ledus.S1G398300"
Ledus.S1	AUGUSTUS	intron	32412056	32412137	.	+	.	transcript_id "Ledus.S1G398300.t1"; gene_id "Ledus.S1G398300"
Ledus.S1	AUGUSTUS	CDS	32412138	32412565	0.24	+	2	transcript_id "Ledus.S1G398300.t1"; gene_id "Ledus.S1G398300"
Ledus.S1	AUGUSTUS	exon	32412138	32412565	.	+	.	transcript_id "Ledus.S1G398300.t1"; gene_id "Ledus.S1G398300"
Ledus.S1	AUGUSTUS	stop_codon	32412566	32412568	.	+	0	transcript_id "Ledus.S1G398300.t1"; gene_id "Ledus.S1G398300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6207.t1 is derived from g3650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29648357	29649764	.	-	.	Ledus.S1G362800
Ledus.S1	AUGUSTUS	transcript	29648357	29649764	.	-	.	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	stop_codon	29648354	29648356	.	-	0	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	CDS	29648357	29648631	1	-	2	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	exon	29648357	29648631	.	-	.	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	intron	29648632	29648784	.	-	.	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	CDS	29648785	29649217	0.8	-	0	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	exon	29648785	29649217	.	-	.	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	intron	29649218	29649318	.	-	.	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	CDS	29649319	29649428	0.98	-	2	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	exon	29649319	29649428	.	-	.	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	intron	29649429	29649595	.	-	.	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	CDS	29649596	29649764	0.52	-	0	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	exon	29649596	29649764	.	-	.	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
Ledus.S1	AUGUSTUS	start_codon	29649762	29649764	.	-	0	transcript_id "Ledus.S1G362800.t1"; gene_id "Ledus.S1G362800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2922.t1 is derived from g357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4592206	4593312	.	+	.	Ledus.S1G034300
Ledus.S1	AUGUSTUS	transcript	4592206	4593312	.	+	.	transcript_id "Ledus.S1G034300.t1"; gene_id "Ledus.S1G034300"
Ledus.S1	AUGUSTUS	start_codon	4592206	4592208	.	+	0	transcript_id "Ledus.S1G034300.t1"; gene_id "Ledus.S1G034300"
Ledus.S1	AUGUSTUS	CDS	4592206	4593312	0.94	+	0	transcript_id "Ledus.S1G034300.t1"; gene_id "Ledus.S1G034300"
Ledus.S1	AUGUSTUS	exon	4592206	4593312	.	+	.	transcript_id "Ledus.S1G034300.t1"; gene_id "Ledus.S1G034300"
Ledus.S1	AUGUSTUS	stop_codon	4593313	4593315	.	+	0	transcript_id "Ledus.S1G034300.t1"; gene_id "Ledus.S1G034300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5447.t1 is derived from g2886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24354710	24355628	.	+	.	Ledus.S1G286800
Ledus.S1	AUGUSTUS	transcript	24354710	24355628	.	+	.	transcript_id "Ledus.S1G286800.t1"; gene_id "Ledus.S1G286800"
Ledus.S1	AUGUSTUS	start_codon	24354710	24354712	.	+	0	transcript_id "Ledus.S1G286800.t1"; gene_id "Ledus.S1G286800"
Ledus.S1	AUGUSTUS	CDS	24354710	24354855	0.18	+	0	transcript_id "Ledus.S1G286800.t1"; gene_id "Ledus.S1G286800"
Ledus.S1	AUGUSTUS	exon	24354710	24354855	.	+	.	transcript_id "Ledus.S1G286800.t1"; gene_id "Ledus.S1G286800"
Ledus.S1	AUGUSTUS	intron	24354856	24355003	.	+	.	transcript_id "Ledus.S1G286800.t1"; gene_id "Ledus.S1G286800"
Ledus.S1	AUGUSTUS	CDS	24355004	24355628	0.2	+	1	transcript_id "Ledus.S1G286800.t1"; gene_id "Ledus.S1G286800"
Ledus.S1	AUGUSTUS	exon	24355004	24355628	.	+	.	transcript_id "Ledus.S1G286800.t1"; gene_id "Ledus.S1G286800"
Ledus.S1	AUGUSTUS	stop_codon	24355629	24355631	.	+	0	transcript_id "Ledus.S1G286800.t1"; gene_id "Ledus.S1G286800"
# This transcript jg9959.t2 is derived from g10989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9960.t1 is derived from g10990.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11553892	11557085	.	+	.	Ledus.S3G143700
Ledus.S3	AUGUSTUS	transcript	11553892	11557085	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	start_codon	11553892	11553894	.	+	0	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	CDS	11553892	11554126	0.96	+	0	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	exon	11553892	11554126	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	intron	11554127	11554372	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	CDS	11554373	11554905	1	+	2	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	exon	11554373	11554905	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	intron	11554906	11555052	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	CDS	11555053	11555435	1	+	0	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	exon	11555053	11555435	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	intron	11555436	11555593	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	CDS	11555594	11555680	1	+	1	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	exon	11555594	11555680	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	intron	11555681	11555816	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	CDS	11555817	11556147	1	+	1	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	exon	11555817	11556147	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	intron	11556148	11556221	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	CDS	11556222	11556632	1	+	0	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	exon	11556222	11556632	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	intron	11556633	11556719	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	CDS	11556720	11556779	1	+	0	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	exon	11556720	11556779	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	intron	11556780	11556890	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	CDS	11556891	11557085	0.99	+	0	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	exon	11556891	11557085	.	+	.	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
Ledus.S3	AUGUSTUS	stop_codon	11557086	11557088	.	+	0	transcript_id "Ledus.S3G143700.t1"; gene_id "Ledus.S3G143700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4971.t1 is derived from g2409.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20930423	20931673	.	-	.	Ledus.S1G239200
Ledus.S1	AUGUSTUS	transcript	20931016	20931673	.	-	.	transcript_id "Ledus.S1G239200.t1"; gene_id "Ledus.S1G239200"
Ledus.S1	AUGUSTUS	stop_codon	20931013	20931015	.	-	0	transcript_id "Ledus.S1G239200.t1"; gene_id "Ledus.S1G239200"
Ledus.S1	AUGUSTUS	CDS	20931016	20931076	0.93	-	1	transcript_id "Ledus.S1G239200.t1"; gene_id "Ledus.S1G239200"
Ledus.S1	AUGUSTUS	exon	20931016	20931076	.	-	.	transcript_id "Ledus.S1G239200.t1"; gene_id "Ledus.S1G239200"
Ledus.S1	AUGUSTUS	intron	20931077	20931227	.	-	.	transcript_id "Ledus.S1G239200.t1"; gene_id "Ledus.S1G239200"
Ledus.S1	AUGUSTUS	CDS	20931228	20931673	0.84	-	0	transcript_id "Ledus.S1G239200.t1"; gene_id "Ledus.S1G239200"
Ledus.S1	AUGUSTUS	exon	20931228	20931673	.	-	.	transcript_id "Ledus.S1G239200.t1"; gene_id "Ledus.S1G239200"
Ledus.S1	AUGUSTUS	start_codon	20931671	20931673	.	-	0	transcript_id "Ledus.S1G239200.t1"; gene_id "Ledus.S1G239200"
Ledus.S1	AUGUSTUS	transcript	20930423	20931673	.	-	.	transcript_id "Ledus.S1G239200.t2"; gene_id "Ledus.S1G239200"
Ledus.S1	AUGUSTUS	stop_codon	20930420	20930422	.	-	0	transcript_id "Ledus.S1G239200.t2"; gene_id "Ledus.S1G239200"
Ledus.S1	AUGUSTUS	CDS	20930423	20931673	1	-	0	transcript_id "Ledus.S1G239200.t2"; gene_id "Ledus.S1G239200"
Ledus.S1	AUGUSTUS	exon	20930423	20931673	.	-	.	transcript_id "Ledus.S1G239200.t2"; gene_id "Ledus.S1G239200"
Ledus.S1	AUGUSTUS	start_codon	20931671	20931673	.	-	0	transcript_id "Ledus.S1G239200.t2"; gene_id "Ledus.S1G239200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6567.t1 is derived from g4010.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32425024	32426897	.	-	.	Ledus.S1G398800
Ledus.S1	AUGUSTUS	transcript	32425024	32426897	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	stop_codon	32425021	32425023	.	-	0	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	CDS	32425024	32425243	0.91	-	1	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	exon	32425024	32425243	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	intron	32425244	32425337	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	CDS	32425338	32425408	0.99	-	0	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	exon	32425338	32425408	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	intron	32425409	32425511	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	CDS	32425512	32425589	1	-	0	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	exon	32425512	32425589	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	intron	32425590	32425701	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	CDS	32425702	32425778	0.84	-	2	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	exon	32425702	32425778	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	intron	32425779	32425913	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	CDS	32425914	32426019	1	-	0	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	exon	32425914	32426019	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	intron	32426020	32426279	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	CDS	32426280	32426576	0.77	-	0	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	exon	32426280	32426576	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	intron	32426577	32426744	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	CDS	32426745	32426897	0.63	-	0	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	exon	32426745	32426897	.	-	.	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
Ledus.S1	AUGUSTUS	start_codon	32426895	32426897	.	-	0	transcript_id "Ledus.S1G398800.t1"; gene_id "Ledus.S1G398800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12377.t1 is derived from g5998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11491654	11493104	.	-	.	Ledus.S4G153300
Ledus.S4	AUGUSTUS	transcript	11491654	11493104	.	-	.	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	stop_codon	11491651	11491653	.	-	0	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	CDS	11491654	11491829	0.6	-	2	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	exon	11491654	11491829	.	-	.	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	intron	11491830	11491981	.	-	.	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	CDS	11491982	11492037	0.44	-	1	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	exon	11491982	11492037	.	-	.	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	intron	11492038	11492318	.	-	.	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	CDS	11492319	11492452	0.86	-	0	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	exon	11492319	11492452	.	-	.	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	intron	11492453	11492553	.	-	.	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	CDS	11492554	11492610	1	-	0	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	exon	11492554	11492610	.	-	.	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	intron	11492611	11492708	.	-	.	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	CDS	11492709	11493104	0.73	-	0	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	exon	11492709	11493104	.	-	.	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
Ledus.S4	AUGUSTUS	start_codon	11493102	11493104	.	-	0	transcript_id "Ledus.S4G153300.t1"; gene_id "Ledus.S4G153300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13119.t1 is derived from g6929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6358023	6358759	.	+	.	Ledus.S6G018100
Ledus.S6	AUGUSTUS	transcript	6358023	6358759	.	+	.	transcript_id "Ledus.S6G018100.t1"; gene_id "Ledus.S6G018100"
Ledus.S6	AUGUSTUS	start_codon	6358023	6358025	.	+	0	transcript_id "Ledus.S6G018100.t1"; gene_id "Ledus.S6G018100"
Ledus.S6	AUGUSTUS	CDS	6358023	6358566	0.5	+	0	transcript_id "Ledus.S6G018100.t1"; gene_id "Ledus.S6G018100"
Ledus.S6	AUGUSTUS	exon	6358023	6358566	.	+	.	transcript_id "Ledus.S6G018100.t1"; gene_id "Ledus.S6G018100"
Ledus.S6	AUGUSTUS	intron	6358567	6358667	.	+	.	transcript_id "Ledus.S6G018100.t1"; gene_id "Ledus.S6G018100"
Ledus.S6	AUGUSTUS	CDS	6358668	6358759	0.45	+	2	transcript_id "Ledus.S6G018100.t1"; gene_id "Ledus.S6G018100"
Ledus.S6	AUGUSTUS	exon	6358668	6358759	.	+	.	transcript_id "Ledus.S6G018100.t1"; gene_id "Ledus.S6G018100"
Ledus.S6	AUGUSTUS	stop_codon	6358760	6358762	.	+	0	transcript_id "Ledus.S6G018100.t1"; gene_id "Ledus.S6G018100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4809.t1 is derived from g2247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19906247	19908346	.	+	.	Ledus.S1G223000
Ledus.S1	AUGUSTUS	transcript	19906247	19908346	.	+	.	transcript_id "Ledus.S1G223000.t1"; gene_id "Ledus.S1G223000"
Ledus.S1	AUGUSTUS	start_codon	19906247	19906249	.	+	0	transcript_id "Ledus.S1G223000.t1"; gene_id "Ledus.S1G223000"
Ledus.S1	AUGUSTUS	CDS	19906247	19908346	0.43	+	0	transcript_id "Ledus.S1G223000.t1"; gene_id "Ledus.S1G223000"
Ledus.S1	AUGUSTUS	exon	19906247	19908346	.	+	.	transcript_id "Ledus.S1G223000.t1"; gene_id "Ledus.S1G223000"
Ledus.S1	AUGUSTUS	stop_codon	19908347	19908349	.	+	0	transcript_id "Ledus.S1G223000.t1"; gene_id "Ledus.S1G223000"
# This transcript jg2200.t2 is derived from g9063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2201.t1 is derived from g9064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15950329	15950559	.	+	.	Ledus.S2G208300
Ledus.S2	AUGUSTUS	transcript	15950329	15950559	.	+	.	transcript_id "Ledus.S2G208300.t1"; gene_id "Ledus.S2G208300"
Ledus.S2	AUGUSTUS	start_codon	15950329	15950331	.	+	0	transcript_id "Ledus.S2G208300.t1"; gene_id "Ledus.S2G208300"
Ledus.S2	AUGUSTUS	CDS	15950329	15950559	0.94	+	0	transcript_id "Ledus.S2G208300.t1"; gene_id "Ledus.S2G208300"
Ledus.S2	AUGUSTUS	exon	15950329	15950559	.	+	.	transcript_id "Ledus.S2G208300.t1"; gene_id "Ledus.S2G208300"
Ledus.S2	AUGUSTUS	stop_codon	15950560	15950562	.	+	0	transcript_id "Ledus.S2G208300.t1"; gene_id "Ledus.S2G208300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6505.t1 is derived from g3948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31744187	31745608	.	+	.	Ledus.S1G392600
Ledus.S1	AUGUSTUS	transcript	31744187	31745608	.	+	.	transcript_id "Ledus.S1G392600.t1"; gene_id "Ledus.S1G392600"
Ledus.S1	AUGUSTUS	start_codon	31744187	31744189	.	+	0	transcript_id "Ledus.S1G392600.t1"; gene_id "Ledus.S1G392600"
Ledus.S1	AUGUSTUS	CDS	31744187	31744650	0.96	+	0	transcript_id "Ledus.S1G392600.t1"; gene_id "Ledus.S1G392600"
Ledus.S1	AUGUSTUS	exon	31744187	31744650	.	+	.	transcript_id "Ledus.S1G392600.t1"; gene_id "Ledus.S1G392600"
Ledus.S1	AUGUSTUS	intron	31744651	31744737	.	+	.	transcript_id "Ledus.S1G392600.t1"; gene_id "Ledus.S1G392600"
Ledus.S1	AUGUSTUS	CDS	31744738	31745305	1	+	1	transcript_id "Ledus.S1G392600.t1"; gene_id "Ledus.S1G392600"
Ledus.S1	AUGUSTUS	exon	31744738	31745305	.	+	.	transcript_id "Ledus.S1G392600.t1"; gene_id "Ledus.S1G392600"
Ledus.S1	AUGUSTUS	intron	31745306	31745404	.	+	.	transcript_id "Ledus.S1G392600.t1"; gene_id "Ledus.S1G392600"
Ledus.S1	AUGUSTUS	CDS	31745405	31745608	1	+	0	transcript_id "Ledus.S1G392600.t1"; gene_id "Ledus.S1G392600"
Ledus.S1	AUGUSTUS	exon	31745405	31745608	.	+	.	transcript_id "Ledus.S1G392600.t1"; gene_id "Ledus.S1G392600"
Ledus.S1	AUGUSTUS	stop_codon	31745609	31745611	.	+	0	transcript_id "Ledus.S1G392600.t1"; gene_id "Ledus.S1G392600"
# This transcript jg8454.t2 is derived from g13126.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8454.t3 is derived from g13126.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8455.t1 is derived from g13127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11782899	11783727	.	+	.	Ledus.S5G123300
Ledus.S5	AUGUSTUS	transcript	11782899	11783546	.	+	.	transcript_id "Ledus.S5G123300.t1"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	start_codon	11782899	11782901	.	+	0	transcript_id "Ledus.S5G123300.t1"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	CDS	11782899	11782946	0.53	+	0	transcript_id "Ledus.S5G123300.t1"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	exon	11782899	11782946	.	+	.	transcript_id "Ledus.S5G123300.t1"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	intron	11782947	11783091	.	+	.	transcript_id "Ledus.S5G123300.t1"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	CDS	11783092	11783387	0.69	+	0	transcript_id "Ledus.S5G123300.t1"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	exon	11783092	11783387	.	+	.	transcript_id "Ledus.S5G123300.t1"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	intron	11783388	11783476	.	+	.	transcript_id "Ledus.S5G123300.t1"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	CDS	11783477	11783546	0.68	+	1	transcript_id "Ledus.S5G123300.t1"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	exon	11783477	11783546	.	+	.	transcript_id "Ledus.S5G123300.t1"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	stop_codon	11783547	11783549	.	+	0	transcript_id "Ledus.S5G123300.t1"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	transcript	11782899	11783727	.	+	.	transcript_id "Ledus.S5G123300.t2"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	start_codon	11782899	11782901	.	+	0	transcript_id "Ledus.S5G123300.t2"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	CDS	11782899	11782946	0.46	+	0	transcript_id "Ledus.S5G123300.t2"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	exon	11782899	11782946	.	+	.	transcript_id "Ledus.S5G123300.t2"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	intron	11782947	11783091	.	+	.	transcript_id "Ledus.S5G123300.t2"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	CDS	11783092	11783727	0.7	+	0	transcript_id "Ledus.S5G123300.t2"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	exon	11783092	11783727	.	+	.	transcript_id "Ledus.S5G123300.t2"; gene_id "Ledus.S5G123300"
Ledus.S5	AUGUSTUS	stop_codon	11783728	11783730	.	+	0	transcript_id "Ledus.S5G123300.t2"; gene_id "Ledus.S5G123300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10150.t1 is derived from g11180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13192465	13192662	.	+	.	Ledus.S3G162700
Ledus.S3	AUGUSTUS	transcript	13192465	13192662	.	+	.	transcript_id "Ledus.S3G162700.t1"; gene_id "Ledus.S3G162700"
Ledus.S3	AUGUSTUS	start_codon	13192465	13192467	.	+	0	transcript_id "Ledus.S3G162700.t1"; gene_id "Ledus.S3G162700"
Ledus.S3	AUGUSTUS	CDS	13192465	13192662	0.72	+	0	transcript_id "Ledus.S3G162700.t1"; gene_id "Ledus.S3G162700"
Ledus.S3	AUGUSTUS	exon	13192465	13192662	.	+	.	transcript_id "Ledus.S3G162700.t1"; gene_id "Ledus.S3G162700"
Ledus.S3	AUGUSTUS	stop_codon	13192663	13192665	.	+	0	transcript_id "Ledus.S3G162700.t1"; gene_id "Ledus.S3G162700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6150.t1 is derived from g3593.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29290668	29293962	.	+	.	Ledus.S1G357100
Ledus.S1	AUGUSTUS	transcript	29290668	29293962	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	start_codon	29290668	29290670	.	+	0	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29290668	29290700	0.41	+	0	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29290668	29290700	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29290701	29290948	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29290949	29291081	0.45	+	0	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29290949	29291081	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29291082	29291185	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29291186	29291271	0.63	+	2	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29291186	29291271	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29291272	29291363	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29291364	29291454	1	+	0	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29291364	29291454	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29291455	29291599	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29291600	29291661	1	+	2	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29291600	29291661	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29291662	29291754	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29291755	29291840	1	+	0	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29291755	29291840	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29291841	29291945	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29291946	29292019	1	+	1	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29291946	29292019	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29292020	29292147	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29292148	29292250	1	+	2	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29292148	29292250	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29292251	29292513	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29292514	29292639	1	+	1	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29292514	29292639	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29292640	29292772	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29292773	29292872	1	+	1	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29292773	29292872	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29292873	29293061	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29293062	29293181	1	+	0	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29293062	29293181	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29293182	29293276	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29293277	29293367	1	+	0	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29293277	29293367	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29293368	29293445	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29293446	29293518	1	+	2	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29293446	29293518	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29293519	29293611	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29293612	29293705	1	+	1	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29293612	29293705	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	intron	29293706	29293791	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	CDS	29293792	29293962	1	+	0	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	exon	29293792	29293962	.	+	.	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
Ledus.S1	AUGUSTUS	stop_codon	29293963	29293965	.	+	0	transcript_id "Ledus.S1G357100.t1"; gene_id "Ledus.S1G357100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2874.t1 is derived from g309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4304030	4310866	.	+	.	Ledus.S1G029500
Ledus.S1	AUGUSTUS	transcript	4304030	4310866	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	start_codon	4304030	4304032	.	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4304030	4304077	0.88	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4304030	4304077	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4304078	4304176	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4304177	4304232	1	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4304177	4304232	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4304233	4304363	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4304364	4304491	1	+	1	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4304364	4304491	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4304492	4304569	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4304570	4304622	1	+	2	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4304570	4304622	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4304623	4305082	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4305083	4305226	1	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4305083	4305226	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4305227	4305322	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4305323	4305396	1	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4305323	4305396	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4305397	4305480	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4305481	4305550	1	+	1	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4305481	4305550	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4305551	4305793	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4305794	4305847	1	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4305794	4305847	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4305848	4306102	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4306103	4306198	1	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4306103	4306198	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4306199	4306353	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4306354	4306404	1	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4306354	4306404	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4306405	4306507	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4306508	4306597	0.7	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4306508	4306597	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4306598	4306699	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4306700	4306813	1	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4306700	4306813	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4306814	4306940	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4306941	4307012	1	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4306941	4307012	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4307013	4307132	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4307133	4307318	0.99	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4307133	4307318	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4307319	4307482	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4307483	4307592	1	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4307483	4307592	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4307593	4307736	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4307737	4307782	1	+	1	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4307737	4307782	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4307783	4307977	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4307978	4308043	1	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4307978	4308043	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4308044	4308232	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4308233	4309039	0.94	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4308233	4309039	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4309040	4309179	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4309180	4309777	0.44	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4309180	4309777	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4309778	4310373	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4310374	4310423	0.84	+	2	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4310374	4310423	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4310424	4310644	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4310645	4310725	0.87	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4310645	4310725	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	intron	4310726	4310824	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	CDS	4310825	4310866	1	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	exon	4310825	4310866	.	+	.	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
Ledus.S1	AUGUSTUS	stop_codon	4310867	4310869	.	+	0	transcript_id "Ledus.S1G029500.t1"; gene_id "Ledus.S1G029500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1968.t1 is derived from g8831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13906540	13907646	.	+	.	Ledus.S2G185000
Ledus.S2	AUGUSTUS	transcript	13906540	13907646	.	+	.	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	start_codon	13906540	13906542	.	+	0	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	CDS	13906540	13906557	0.64	+	0	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	exon	13906540	13906557	.	+	.	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	intron	13906558	13906686	.	+	.	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	CDS	13906687	13906886	0.64	+	0	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	exon	13906687	13906886	.	+	.	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	intron	13906887	13906988	.	+	.	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	CDS	13906989	13907217	0.69	+	1	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	exon	13906989	13907217	.	+	.	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	intron	13907218	13907355	.	+	.	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	CDS	13907356	13907646	0.99	+	0	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	exon	13907356	13907646	.	+	.	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
Ledus.S2	AUGUSTUS	stop_codon	13907647	13907649	.	+	0	transcript_id "Ledus.S2G185000.t1"; gene_id "Ledus.S2G185000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6445.t1 is derived from g3888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31276160	31277170	.	-	.	Ledus.S1G386600
Ledus.S1	AUGUSTUS	transcript	31276160	31277170	.	-	.	transcript_id "Ledus.S1G386600.t1"; gene_id "Ledus.S1G386600"
Ledus.S1	AUGUSTUS	stop_codon	31276157	31276159	.	-	0	transcript_id "Ledus.S1G386600.t1"; gene_id "Ledus.S1G386600"
Ledus.S1	AUGUSTUS	CDS	31276160	31276369	1	-	0	transcript_id "Ledus.S1G386600.t1"; gene_id "Ledus.S1G386600"
Ledus.S1	AUGUSTUS	exon	31276160	31276369	.	-	.	transcript_id "Ledus.S1G386600.t1"; gene_id "Ledus.S1G386600"
Ledus.S1	AUGUSTUS	intron	31276370	31276456	.	-	.	transcript_id "Ledus.S1G386600.t1"; gene_id "Ledus.S1G386600"
Ledus.S1	AUGUSTUS	CDS	31276457	31277170	0.38	-	0	transcript_id "Ledus.S1G386600.t1"; gene_id "Ledus.S1G386600"
Ledus.S1	AUGUSTUS	exon	31276457	31277170	.	-	.	transcript_id "Ledus.S1G386600.t1"; gene_id "Ledus.S1G386600"
Ledus.S1	AUGUSTUS	start_codon	31277168	31277170	.	-	0	transcript_id "Ledus.S1G386600.t1"; gene_id "Ledus.S1G386600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9061.t1 is derived from g10091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4304614	4305274	.	+	.	Ledus.S3G053800
Ledus.S3	AUGUSTUS	transcript	4304614	4305274	.	+	.	transcript_id "Ledus.S3G053800.t1"; gene_id "Ledus.S3G053800"
Ledus.S3	AUGUSTUS	start_codon	4304614	4304616	.	+	0	transcript_id "Ledus.S3G053800.t1"; gene_id "Ledus.S3G053800"
Ledus.S3	AUGUSTUS	CDS	4304614	4304694	0.83	+	0	transcript_id "Ledus.S3G053800.t1"; gene_id "Ledus.S3G053800"
Ledus.S3	AUGUSTUS	exon	4304614	4304694	.	+	.	transcript_id "Ledus.S3G053800.t1"; gene_id "Ledus.S3G053800"
Ledus.S3	AUGUSTUS	intron	4304695	4304776	.	+	.	transcript_id "Ledus.S3G053800.t1"; gene_id "Ledus.S3G053800"
Ledus.S3	AUGUSTUS	CDS	4304777	4304865	1	+	0	transcript_id "Ledus.S3G053800.t1"; gene_id "Ledus.S3G053800"
Ledus.S3	AUGUSTUS	exon	4304777	4304865	.	+	.	transcript_id "Ledus.S3G053800.t1"; gene_id "Ledus.S3G053800"
Ledus.S3	AUGUSTUS	intron	4304866	4304946	.	+	.	transcript_id "Ledus.S3G053800.t1"; gene_id "Ledus.S3G053800"
Ledus.S3	AUGUSTUS	CDS	4304947	4305274	1	+	1	transcript_id "Ledus.S3G053800.t1"; gene_id "Ledus.S3G053800"
Ledus.S3	AUGUSTUS	exon	4304947	4305274	.	+	.	transcript_id "Ledus.S3G053800.t1"; gene_id "Ledus.S3G053800"
Ledus.S3	AUGUSTUS	stop_codon	4305275	4305277	.	+	0	transcript_id "Ledus.S3G053800.t1"; gene_id "Ledus.S3G053800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg595.t1 is derived from g7456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3540629	3550800	.	+	.	Ledus.S2G047700
Ledus.S2	AUGUSTUS	transcript	3540629	3550800	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	start_codon	3540629	3540631	.	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3540629	3540657	0.94	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3540629	3540657	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3540658	3540749	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3540750	3540954	0.63	+	1	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3540750	3540954	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3540955	3541032	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3541033	3541266	0.59	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3541033	3541266	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3541267	3541635	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3541636	3543654	1	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3541636	3543654	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3543655	3543848	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3543849	3545273	0.87	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3543849	3545273	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3545274	3545362	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3545363	3545472	1	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3545363	3545472	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3545473	3545694	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3545695	3545782	1	+	1	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3545695	3545782	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3545783	3545862	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3545863	3545949	1	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3545863	3545949	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3545950	3546028	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3546029	3546121	1	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3546029	3546121	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3546122	3546219	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3546220	3546303	0.99	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3546220	3546303	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3546304	3546428	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3546429	3546632	0.99	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3546429	3546632	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3546633	3546722	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3546723	3546998	0.95	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3546723	3546998	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3546999	3547088	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3547089	3548777	0.97	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3547089	3548777	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3548778	3548955	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3548956	3549519	0.87	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3548956	3549519	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3549520	3549637	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3549638	3549868	0.79	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3549638	3549868	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	intron	3549869	3549954	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	CDS	3549955	3550800	0.99	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	exon	3549955	3550800	.	+	.	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
Ledus.S2	AUGUSTUS	stop_codon	3550801	3550803	.	+	0	transcript_id "Ledus.S2G047700.t1"; gene_id "Ledus.S2G047700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12380.t1 is derived from g6001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11557522	11559324	.	+	.	Ledus.S4G153600
Ledus.S4	AUGUSTUS	transcript	11557522	11559324	.	+	.	transcript_id "Ledus.S4G153600.t1"; gene_id "Ledus.S4G153600"
Ledus.S4	AUGUSTUS	start_codon	11557522	11557524	.	+	0	transcript_id "Ledus.S4G153600.t1"; gene_id "Ledus.S4G153600"
Ledus.S4	AUGUSTUS	CDS	11557522	11559324	1	+	0	transcript_id "Ledus.S4G153600.t1"; gene_id "Ledus.S4G153600"
Ledus.S4	AUGUSTUS	exon	11557522	11559324	.	+	.	transcript_id "Ledus.S4G153600.t1"; gene_id "Ledus.S4G153600"
Ledus.S4	AUGUSTUS	stop_codon	11559325	11559327	.	+	0	transcript_id "Ledus.S4G153600.t1"; gene_id "Ledus.S4G153600"
Ledus.S4	AUGUSTUS	transcript	11557936	11559324	.	+	.	transcript_id "Ledus.S4G153600.t2"; gene_id "Ledus.S4G153600"
Ledus.S4	AUGUSTUS	start_codon	11557936	11557938	.	+	0	transcript_id "Ledus.S4G153600.t2"; gene_id "Ledus.S4G153600"
Ledus.S4	AUGUSTUS	CDS	11557936	11559324	0.87	+	0	transcript_id "Ledus.S4G153600.t2"; gene_id "Ledus.S4G153600"
Ledus.S4	AUGUSTUS	exon	11557936	11559324	.	+	.	transcript_id "Ledus.S4G153600.t2"; gene_id "Ledus.S4G153600"
Ledus.S4	AUGUSTUS	stop_codon	11559325	11559327	.	+	0	transcript_id "Ledus.S4G153600.t2"; gene_id "Ledus.S4G153600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1168.t1 is derived from g8029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8050123	8051130	.	+	.	Ledus.S2G105000
Ledus.S2	AUGUSTUS	transcript	8050123	8051130	.	+	.	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	start_codon	8050123	8050125	.	+	0	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	CDS	8050123	8050244	0.75	+	0	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	exon	8050123	8050244	.	+	.	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	intron	8050245	8050343	.	+	.	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	CDS	8050344	8050544	1	+	1	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	exon	8050344	8050544	.	+	.	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	intron	8050545	8050647	.	+	.	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	CDS	8050648	8050738	1	+	1	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	exon	8050648	8050738	.	+	.	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	intron	8050739	8050823	.	+	.	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	CDS	8050824	8050921	1	+	0	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	exon	8050824	8050921	.	+	.	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	intron	8050922	8051009	.	+	.	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	CDS	8051010	8051130	0.78	+	1	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	exon	8051010	8051130	.	+	.	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
Ledus.S2	AUGUSTUS	stop_codon	8051131	8051133	.	+	0	transcript_id "Ledus.S2G105000.t1"; gene_id "Ledus.S2G105000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg858.t1 is derived from g7719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5706950	5709100	.	-	.	Ledus.S2G074000
Ledus.S2	AUGUSTUS	transcript	5706950	5709100	.	-	.	transcript_id "Ledus.S2G074000.t1"; gene_id "Ledus.S2G074000"
Ledus.S2	AUGUSTUS	stop_codon	5706947	5706949	.	-	0	transcript_id "Ledus.S2G074000.t1"; gene_id "Ledus.S2G074000"
Ledus.S2	AUGUSTUS	CDS	5706950	5709100	0.98	-	0	transcript_id "Ledus.S2G074000.t1"; gene_id "Ledus.S2G074000"
Ledus.S2	AUGUSTUS	exon	5706950	5709100	.	-	.	transcript_id "Ledus.S2G074000.t1"; gene_id "Ledus.S2G074000"
Ledus.S2	AUGUSTUS	start_codon	5709098	5709100	.	-	0	transcript_id "Ledus.S2G074000.t1"; gene_id "Ledus.S2G074000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10456.t1 is derived from g11486.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15262787	15263354	.	-	.	Ledus.S3G193300
Ledus.S3	AUGUSTUS	transcript	15262787	15263354	.	-	.	transcript_id "Ledus.S3G193300.t1"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	stop_codon	15262784	15262786	.	-	0	transcript_id "Ledus.S3G193300.t1"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	CDS	15262787	15262956	0.72	-	2	transcript_id "Ledus.S3G193300.t1"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	exon	15262787	15262956	.	-	.	transcript_id "Ledus.S3G193300.t1"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	intron	15262957	15263053	.	-	.	transcript_id "Ledus.S3G193300.t1"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	CDS	15263054	15263082	0.87	-	1	transcript_id "Ledus.S3G193300.t1"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	exon	15263054	15263082	.	-	.	transcript_id "Ledus.S3G193300.t1"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	intron	15263083	15263166	.	-	.	transcript_id "Ledus.S3G193300.t1"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	CDS	15263167	15263354	0.66	-	0	transcript_id "Ledus.S3G193300.t1"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	exon	15263167	15263354	.	-	.	transcript_id "Ledus.S3G193300.t1"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	start_codon	15263352	15263354	.	-	0	transcript_id "Ledus.S3G193300.t1"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	transcript	15262787	15263354	.	-	.	transcript_id "Ledus.S3G193300.t2"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	stop_codon	15262784	15262786	.	-	0	transcript_id "Ledus.S3G193300.t2"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	CDS	15262787	15262970	0.76	-	1	transcript_id "Ledus.S3G193300.t2"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	exon	15262787	15262970	.	-	.	transcript_id "Ledus.S3G193300.t2"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	intron	15262971	15263053	.	-	.	transcript_id "Ledus.S3G193300.t2"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	CDS	15263054	15263145	0.73	-	0	transcript_id "Ledus.S3G193300.t2"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	exon	15263054	15263145	.	-	.	transcript_id "Ledus.S3G193300.t2"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	intron	15263146	15263234	.	-	.	transcript_id "Ledus.S3G193300.t2"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	CDS	15263235	15263354	0.5	-	0	transcript_id "Ledus.S3G193300.t2"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	exon	15263235	15263354	.	-	.	transcript_id "Ledus.S3G193300.t2"; gene_id "Ledus.S3G193300"
Ledus.S3	AUGUSTUS	start_codon	15263352	15263354	.	-	0	transcript_id "Ledus.S3G193300.t2"; gene_id "Ledus.S3G193300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11953.t1 is derived from g5572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7983596	7997077	.	-	.	Ledus.S4G110900
Ledus.S4	AUGUSTUS	transcript	7983596	7997077	.	-	.	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	stop_codon	7983593	7983595	.	-	0	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	CDS	7983596	7994542	0.95	-	0	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	exon	7983596	7994542	.	-	.	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	intron	7994543	7994733	.	-	.	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	CDS	7994734	7996316	0.98	-	2	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	exon	7994734	7996316	.	-	.	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	intron	7996317	7996407	.	-	.	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	CDS	7996408	7996492	0.97	-	0	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	exon	7996408	7996492	.	-	.	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	intron	7996493	7996846	.	-	.	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	CDS	7996847	7997077	0.21	-	0	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	exon	7996847	7997077	.	-	.	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
Ledus.S4	AUGUSTUS	start_codon	7997075	7997077	.	-	0	transcript_id "Ledus.S4G110900.t1"; gene_id "Ledus.S4G110900"
# This transcript jg6497.t2 is derived from g3940.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6498.t1 is derived from g3941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31640360	31644725	.	-	.	Ledus.S1G391900
Ledus.S1	AUGUSTUS	transcript	31640360	31644725	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	stop_codon	31640357	31640359	.	-	0	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	CDS	31640360	31640555	1	-	1	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	exon	31640360	31640555	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	intron	31640556	31640649	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	CDS	31640650	31640780	1	-	0	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	exon	31640650	31640780	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	intron	31640781	31640961	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	CDS	31640962	31641111	0.96	-	0	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	exon	31640962	31641111	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	intron	31641112	31641220	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	CDS	31641221	31641367	0.96	-	0	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	exon	31641221	31641367	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	intron	31641368	31641519	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	CDS	31641520	31641717	1	-	0	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	exon	31641520	31641717	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	intron	31641718	31641896	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	CDS	31641897	31642121	0.96	-	0	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	exon	31641897	31642121	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	intron	31642122	31642226	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	CDS	31642227	31642322	1	-	0	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	exon	31642227	31642322	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	intron	31642323	31642543	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	CDS	31642544	31642774	1	-	0	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	exon	31642544	31642774	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	intron	31642775	31642897	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	CDS	31642898	31644007	0.7	-	0	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	exon	31642898	31644007	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	intron	31644008	31644198	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	CDS	31644199	31644265	0.7	-	1	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	exon	31644199	31644265	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	intron	31644266	31644570	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	CDS	31644571	31644725	0.35	-	0	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	exon	31644571	31644725	.	-	.	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
Ledus.S1	AUGUSTUS	start_codon	31644723	31644725	.	-	0	transcript_id "Ledus.S1G391900.t1"; gene_id "Ledus.S1G391900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3718.t1 is derived from g1154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11144452	11145072	.	-	.	Ledus.S1G113900
Ledus.S1	AUGUSTUS	transcript	11144452	11145072	.	-	.	transcript_id "Ledus.S1G113900.t1"; gene_id "Ledus.S1G113900"
Ledus.S1	AUGUSTUS	stop_codon	11144449	11144451	.	-	0	transcript_id "Ledus.S1G113900.t1"; gene_id "Ledus.S1G113900"
Ledus.S1	AUGUSTUS	CDS	11144452	11144703	0.66	-	0	transcript_id "Ledus.S1G113900.t1"; gene_id "Ledus.S1G113900"
Ledus.S1	AUGUSTUS	exon	11144452	11144703	.	-	.	transcript_id "Ledus.S1G113900.t1"; gene_id "Ledus.S1G113900"
Ledus.S1	AUGUSTUS	intron	11144704	11145042	.	-	.	transcript_id "Ledus.S1G113900.t1"; gene_id "Ledus.S1G113900"
Ledus.S1	AUGUSTUS	CDS	11145043	11145072	0.45	-	0	transcript_id "Ledus.S1G113900.t1"; gene_id "Ledus.S1G113900"
Ledus.S1	AUGUSTUS	exon	11145043	11145072	.	-	.	transcript_id "Ledus.S1G113900.t1"; gene_id "Ledus.S1G113900"
Ledus.S1	AUGUSTUS	start_codon	11145070	11145072	.	-	0	transcript_id "Ledus.S1G113900.t1"; gene_id "Ledus.S1G113900"
# This transcript jg1608.t2 is derived from g8469.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1609.t1 is derived from g8470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11337121	11337615	.	-	.	Ledus.S2G149100
Ledus.S2	AUGUSTUS	transcript	11337121	11337615	.	-	.	transcript_id "Ledus.S2G149100.t1"; gene_id "Ledus.S2G149100"
Ledus.S2	AUGUSTUS	stop_codon	11337118	11337120	.	-	0	transcript_id "Ledus.S2G149100.t1"; gene_id "Ledus.S2G149100"
Ledus.S2	AUGUSTUS	CDS	11337121	11337615	0.68	-	0	transcript_id "Ledus.S2G149100.t1"; gene_id "Ledus.S2G149100"
Ledus.S2	AUGUSTUS	exon	11337121	11337615	.	-	.	transcript_id "Ledus.S2G149100.t1"; gene_id "Ledus.S2G149100"
Ledus.S2	AUGUSTUS	start_codon	11337613	11337615	.	-	0	transcript_id "Ledus.S2G149100.t1"; gene_id "Ledus.S2G149100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2451.t1 is derived from g9314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18169462	18170457	.	+	.	Ledus.S2G233300
Ledus.S2	AUGUSTUS	transcript	18169462	18170457	.	+	.	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	start_codon	18169462	18169464	.	+	0	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	CDS	18169462	18169528	0.99	+	0	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	exon	18169462	18169528	.	+	.	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	intron	18169529	18169686	.	+	.	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	CDS	18169687	18169741	0.99	+	2	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	exon	18169687	18169741	.	+	.	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	intron	18169742	18169959	.	+	.	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	CDS	18169960	18170024	0.43	+	1	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	exon	18169960	18170024	.	+	.	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	intron	18170025	18170323	.	+	.	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	CDS	18170324	18170457	0.47	+	2	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	exon	18170324	18170457	.	+	.	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
Ledus.S2	AUGUSTUS	stop_codon	18170458	18170460	.	+	0	transcript_id "Ledus.S2G233300.t1"; gene_id "Ledus.S2G233300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13014.t1 is derived from g6824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2950908	2951306	.	+	.	Ledus.S6G007600
Ledus.S6	AUGUSTUS	transcript	2950908	2951306	.	+	.	transcript_id "Ledus.S6G007600.t1"; gene_id "Ledus.S6G007600"
Ledus.S6	AUGUSTUS	start_codon	2950908	2950910	.	+	0	transcript_id "Ledus.S6G007600.t1"; gene_id "Ledus.S6G007600"
Ledus.S6	AUGUSTUS	CDS	2950908	2951306	0.82	+	0	transcript_id "Ledus.S6G007600.t1"; gene_id "Ledus.S6G007600"
Ledus.S6	AUGUSTUS	exon	2950908	2951306	.	+	.	transcript_id "Ledus.S6G007600.t1"; gene_id "Ledus.S6G007600"
Ledus.S6	AUGUSTUS	stop_codon	2951307	2951309	.	+	0	transcript_id "Ledus.S6G007600.t1"; gene_id "Ledus.S6G007600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg829.t1 is derived from g7690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5420962	5421219	.	-	.	Ledus.S2G071100
Ledus.S2	AUGUSTUS	transcript	5420962	5421219	.	-	.	transcript_id "Ledus.S2G071100.t1"; gene_id "Ledus.S2G071100"
Ledus.S2	AUGUSTUS	stop_codon	5420959	5420961	.	-	0	transcript_id "Ledus.S2G071100.t1"; gene_id "Ledus.S2G071100"
Ledus.S2	AUGUSTUS	CDS	5420962	5421219	0.53	-	0	transcript_id "Ledus.S2G071100.t1"; gene_id "Ledus.S2G071100"
Ledus.S2	AUGUSTUS	exon	5420962	5421219	.	-	.	transcript_id "Ledus.S2G071100.t1"; gene_id "Ledus.S2G071100"
Ledus.S2	AUGUSTUS	start_codon	5421217	5421219	.	-	0	transcript_id "Ledus.S2G071100.t1"; gene_id "Ledus.S2G071100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1243.t1 is derived from g8104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8815545	8820519	.	+	.	Ledus.S2G112500
Ledus.S2	AUGUSTUS	transcript	8815545	8820519	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	start_codon	8815545	8815547	.	+	0	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8815545	8815727	0.99	+	0	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8815545	8815727	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8815728	8815804	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8815805	8816802	1	+	0	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8815805	8816802	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8816803	8816893	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8816894	8816916	1	+	1	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8816894	8816916	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8816917	8817006	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8817007	8817094	1	+	2	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8817007	8817094	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8817095	8817207	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8817208	8817415	1	+	1	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8817208	8817415	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8817416	8817546	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8817547	8817579	1	+	0	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8817547	8817579	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8817580	8817676	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8817677	8818082	0.99	+	0	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8817677	8818082	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8818083	8818170	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8818171	8818283	1	+	2	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8818171	8818283	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8818284	8818367	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8818368	8818559	1	+	0	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8818368	8818559	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8818560	8818657	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8818658	8818743	1	+	0	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8818658	8818743	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8818744	8818829	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8818830	8818911	1	+	1	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8818830	8818911	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8818912	8818989	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8818990	8819145	1	+	0	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8818990	8819145	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8819146	8819304	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8819305	8819460	0.99	+	0	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8819305	8819460	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8819461	8819584	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8819585	8819821	0.91	+	0	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8819585	8819821	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8819822	8819974	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8819975	8820053	1	+	0	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8819975	8820053	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8820054	8820430	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8820431	8820519	1	+	2	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8820431	8820519	.	+	.	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	stop_codon	8820520	8820522	.	+	0	transcript_id "Ledus.S2G112500.t1"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	transcript	8815545	8820519	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	start_codon	8815545	8815547	.	+	0	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8815545	8815727	1	+	0	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8815545	8815727	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8815728	8815900	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8815901	8816802	0.91	+	0	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8815901	8816802	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8816803	8816893	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8816894	8816916	1	+	1	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8816894	8816916	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8816917	8817006	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8817007	8817094	1	+	2	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8817007	8817094	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8817095	8817207	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8817208	8817415	1	+	1	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8817208	8817415	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8817416	8817546	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8817547	8817579	1	+	0	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8817547	8817579	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8817580	8817676	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8817677	8818082	1	+	0	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8817677	8818082	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8818083	8818170	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8818171	8818283	1	+	2	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8818171	8818283	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8818284	8818367	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8818368	8818559	1	+	0	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8818368	8818559	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8818560	8818657	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8818658	8818743	1	+	0	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8818658	8818743	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8818744	8818829	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8818830	8818911	1	+	1	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8818830	8818911	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8818912	8818989	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8818990	8819145	1	+	0	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8818990	8819145	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8819146	8819304	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8819305	8819460	1	+	0	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8819305	8819460	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8819461	8819584	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8819585	8819821	0.9	+	0	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8819585	8819821	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8819822	8819974	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8819975	8820053	1	+	0	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8819975	8820053	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	intron	8820054	8820430	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	CDS	8820431	8820519	1	+	2	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	exon	8820431	8820519	.	+	.	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
Ledus.S2	AUGUSTUS	stop_codon	8820520	8820522	.	+	0	transcript_id "Ledus.S2G112500.t2"; gene_id "Ledus.S2G112500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8093.t1 is derived from g12764.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9111529	9114344	.	-	.	Ledus.S5G087100
Ledus.S5	AUGUSTUS	transcript	9111529	9114344	.	-	.	transcript_id "Ledus.S5G087100.t1"; gene_id "Ledus.S5G087100"
Ledus.S5	AUGUSTUS	stop_codon	9111526	9111528	.	-	0	transcript_id "Ledus.S5G087100.t1"; gene_id "Ledus.S5G087100"
Ledus.S5	AUGUSTUS	CDS	9111529	9113160	1	-	0	transcript_id "Ledus.S5G087100.t1"; gene_id "Ledus.S5G087100"
Ledus.S5	AUGUSTUS	exon	9111529	9113160	.	-	.	transcript_id "Ledus.S5G087100.t1"; gene_id "Ledus.S5G087100"
Ledus.S5	AUGUSTUS	intron	9113161	9114263	.	-	.	transcript_id "Ledus.S5G087100.t1"; gene_id "Ledus.S5G087100"
Ledus.S5	AUGUSTUS	CDS	9114264	9114344	1	-	0	transcript_id "Ledus.S5G087100.t1"; gene_id "Ledus.S5G087100"
Ledus.S5	AUGUSTUS	exon	9114264	9114344	.	-	.	transcript_id "Ledus.S5G087100.t1"; gene_id "Ledus.S5G087100"
Ledus.S5	AUGUSTUS	start_codon	9114342	9114344	.	-	0	transcript_id "Ledus.S5G087100.t1"; gene_id "Ledus.S5G087100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4029.t1 is derived from g1465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14257529	14259587	.	-	.	Ledus.S1G145000
Ledus.S1	AUGUSTUS	transcript	14257529	14259587	.	-	.	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	stop_codon	14257526	14257528	.	-	0	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	CDS	14257529	14257640	0.99	-	1	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	exon	14257529	14257640	.	-	.	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	intron	14257641	14257794	.	-	.	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	CDS	14257795	14257958	1	-	0	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	exon	14257795	14257958	.	-	.	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	intron	14257959	14258173	.	-	.	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	CDS	14258174	14258898	0.74	-	2	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	exon	14258174	14258898	.	-	.	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	intron	14258899	14258981	.	-	.	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	CDS	14258982	14259007	0.57	-	1	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	exon	14258982	14259007	.	-	.	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	intron	14259008	14259318	.	-	.	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	CDS	14259319	14259587	0.18	-	0	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	exon	14259319	14259587	.	-	.	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
Ledus.S1	AUGUSTUS	start_codon	14259585	14259587	.	-	0	transcript_id "Ledus.S1G145000.t1"; gene_id "Ledus.S1G145000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9988.t1 is derived from g11018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11754911	11759309	.	+	.	Ledus.S3G146500
Ledus.S3	AUGUSTUS	transcript	11754911	11759309	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	start_codon	11754911	11754913	.	+	0	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11754911	11754963	0.26	+	0	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11754911	11754963	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11754964	11755053	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11755054	11755163	1	+	1	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11755054	11755163	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11755164	11755290	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11755291	11755362	1	+	2	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11755291	11755362	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11755363	11755554	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11755555	11755617	1	+	2	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11755555	11755617	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11755618	11755762	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11755763	11755819	1	+	2	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11755763	11755819	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11755820	11755947	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11755948	11756015	1	+	2	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11755948	11756015	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11756016	11756220	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11756221	11756302	0.98	+	0	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11756221	11756302	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11756303	11756409	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11756410	11756465	0.98	+	2	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11756410	11756465	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11756466	11756571	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11756572	11756874	0.97	+	0	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11756572	11756874	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11756875	11756989	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11756990	11757076	1	+	0	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11756990	11757076	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11757077	11757163	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11757164	11757338	1	+	0	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11757164	11757338	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11757339	11757430	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11757431	11757552	1	+	2	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11757431	11757552	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11757553	11757679	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11757680	11757843	0.99	+	0	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11757680	11757843	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11757844	11758001	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11758002	11758256	1	+	1	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11758002	11758256	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11758257	11758405	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11758406	11758527	1	+	1	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11758406	11758527	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11758528	11758625	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11758626	11758747	1	+	2	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11758626	11758747	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11758748	11758822	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11758823	11758971	1	+	0	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11758823	11758971	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11758972	11759052	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11759053	11759191	1	+	1	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11759053	11759191	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	intron	11759192	11759276	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	CDS	11759277	11759309	1	+	0	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	exon	11759277	11759309	.	+	.	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
Ledus.S3	AUGUSTUS	stop_codon	11759310	11759312	.	+	0	transcript_id "Ledus.S3G146500.t1"; gene_id "Ledus.S3G146500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2088.t1 is derived from g8951.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14679006	14682178	.	-	.	Ledus.S2G197000
Ledus.S2	AUGUSTUS	transcript	14679006	14682178	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	stop_codon	14679003	14679005	.	-	0	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14679006	14679276	1	-	1	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14679006	14679276	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14679277	14679352	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14679353	14679414	1	-	0	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14679353	14679414	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14679415	14679491	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14679492	14679629	1	-	0	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14679492	14679629	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14679630	14679721	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14679722	14679859	1	-	0	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14679722	14679859	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14679860	14679940	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14679941	14680114	1	-	0	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14679941	14680114	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14680115	14680211	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14680212	14680301	1	-	0	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14680212	14680301	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14680302	14680424	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14680425	14680654	0.99	-	2	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14680425	14680654	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14680655	14680814	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14680815	14680968	1	-	0	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14680815	14680968	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14680969	14681159	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14681160	14681302	1	-	2	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14681160	14681302	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14681303	14681414	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14681415	14681558	1	-	2	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14681415	14681558	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14681559	14681852	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14681853	14681969	0.76	-	2	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14681853	14681969	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14681970	14682144	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14682145	14682178	0.97	-	0	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14682145	14682178	.	-	.	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	start_codon	14682176	14682178	.	-	0	transcript_id "Ledus.S2G197000.t1"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	transcript	14679006	14682178	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	stop_codon	14679003	14679005	.	-	0	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14679006	14679276	1	-	1	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14679006	14679276	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14679277	14679352	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14679353	14679414	1	-	0	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14679353	14679414	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14679415	14679491	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14679492	14679629	1	-	0	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14679492	14679629	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14679630	14679721	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14679722	14679859	1	-	0	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14679722	14679859	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14679860	14679940	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14679941	14680114	1	-	0	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14679941	14680114	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14680115	14680211	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14680212	14680301	1	-	0	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14680212	14680301	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14680302	14680424	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14680425	14680654	0.97	-	2	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14680425	14680654	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14680655	14680814	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14680815	14680968	1	-	0	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14680815	14680968	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14680969	14681159	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14681160	14681302	1	-	2	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14681160	14681302	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14681303	14681414	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14681415	14681534	0.98	-	2	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14681415	14681534	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14681535	14681852	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14681853	14681969	0.69	-	2	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14681853	14681969	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	intron	14681970	14682144	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	CDS	14682145	14682178	0.92	-	0	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	exon	14682145	14682178	.	-	.	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
Ledus.S2	AUGUSTUS	start_codon	14682176	14682178	.	-	0	transcript_id "Ledus.S2G197000.t2"; gene_id "Ledus.S2G197000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7542.t1 is derived from g12213.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3751658	3754076	.	-	.	Ledus.S5G032000
Ledus.S5	AUGUSTUS	transcript	3751658	3754076	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	stop_codon	3751655	3751657	.	-	0	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	CDS	3751658	3751763	1	-	1	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	exon	3751658	3751763	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	intron	3751764	3751891	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	CDS	3751892	3752027	1	-	2	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	exon	3751892	3752027	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	intron	3752028	3752167	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	CDS	3752168	3752275	1	-	2	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	exon	3752168	3752275	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	intron	3752276	3752412	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	CDS	3752413	3752509	1	-	0	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	exon	3752413	3752509	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	intron	3752510	3752637	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	CDS	3752638	3752742	1	-	0	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	exon	3752638	3752742	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	intron	3752743	3752901	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	CDS	3752902	3753084	0.99	-	0	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	exon	3752902	3753084	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	intron	3753085	3753192	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	CDS	3753193	3753252	0.98	-	0	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	exon	3753193	3753252	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	intron	3753253	3753592	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	CDS	3753593	3753708	1	-	2	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	exon	3753593	3753708	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	intron	3753709	3753772	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	CDS	3753773	3753778	0.64	-	2	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	exon	3753773	3753778	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	intron	3753779	3753940	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	CDS	3753941	3754076	0.92	-	0	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	exon	3753941	3754076	.	-	.	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
Ledus.S5	AUGUSTUS	start_codon	3754074	3754076	.	-	0	transcript_id "Ledus.S5G032000.t1"; gene_id "Ledus.S5G032000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3652.t1 is derived from g1088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10425362	10426914	.	-	.	Ledus.S1G107300
Ledus.S1	AUGUSTUS	transcript	10425362	10426914	.	-	.	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	stop_codon	10425359	10425361	.	-	0	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	CDS	10425362	10425639	1	-	2	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	exon	10425362	10425639	.	-	.	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	intron	10425640	10425723	.	-	.	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	CDS	10425724	10426160	1	-	1	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	exon	10425724	10426160	.	-	.	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	intron	10426161	10426234	.	-	.	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	CDS	10426235	10426314	1	-	0	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	exon	10426235	10426314	.	-	.	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	intron	10426315	10426385	.	-	.	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	CDS	10426386	10426557	1	-	1	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	exon	10426386	10426557	.	-	.	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	intron	10426558	10426663	.	-	.	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	CDS	10426664	10426914	0.89	-	0	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	exon	10426664	10426914	.	-	.	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
Ledus.S1	AUGUSTUS	start_codon	10426912	10426914	.	-	0	transcript_id "Ledus.S1G107300.t1"; gene_id "Ledus.S1G107300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4623.t1 is derived from g2060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18333859	18334585	.	-	.	Ledus.S1G204400
Ledus.S1	AUGUSTUS	transcript	18333859	18334585	.	-	.	transcript_id "Ledus.S1G204400.t1"; gene_id "Ledus.S1G204400"
Ledus.S1	AUGUSTUS	stop_codon	18333856	18333858	.	-	0	transcript_id "Ledus.S1G204400.t1"; gene_id "Ledus.S1G204400"
Ledus.S1	AUGUSTUS	CDS	18333859	18334200	0.86	-	0	transcript_id "Ledus.S1G204400.t1"; gene_id "Ledus.S1G204400"
Ledus.S1	AUGUSTUS	exon	18333859	18334200	.	-	.	transcript_id "Ledus.S1G204400.t1"; gene_id "Ledus.S1G204400"
Ledus.S1	AUGUSTUS	intron	18334201	18334279	.	-	.	transcript_id "Ledus.S1G204400.t1"; gene_id "Ledus.S1G204400"
Ledus.S1	AUGUSTUS	CDS	18334280	18334585	0.53	-	0	transcript_id "Ledus.S1G204400.t1"; gene_id "Ledus.S1G204400"
Ledus.S1	AUGUSTUS	exon	18334280	18334585	.	-	.	transcript_id "Ledus.S1G204400.t1"; gene_id "Ledus.S1G204400"
Ledus.S1	AUGUSTUS	start_codon	18334583	18334585	.	-	0	transcript_id "Ledus.S1G204400.t1"; gene_id "Ledus.S1G204400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9631.t1 is derived from g10661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8464877	8469941	.	+	.	Ledus.S3G110800
Ledus.S3	AUGUSTUS	transcript	8464877	8469941	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	start_codon	8464877	8464879	.	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8464877	8465017	1	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8464877	8465017	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8465018	8465220	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8465221	8465277	1	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8465221	8465277	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8465278	8465406	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8465407	8465484	0.84	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8465407	8465484	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8465485	8465581	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8465582	8465644	1	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8465582	8465644	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8465645	8465845	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8465846	8466022	1	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8465846	8466022	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8466023	8466211	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8466212	8466328	1	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8466212	8466328	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8466329	8466502	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8466503	8466569	0.69	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8466503	8466569	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8466570	8466681	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8466682	8466884	0.51	+	2	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8466682	8466884	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8466885	8467074	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8467075	8467145	1	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8467075	8467145	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8467146	8467334	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8467335	8467419	1	+	1	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8467335	8467419	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8467420	8467611	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8467612	8467680	1	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8467612	8467680	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8467681	8467891	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8467892	8468010	1	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8467892	8468010	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8468011	8468104	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8468105	8468243	0.91	+	1	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8468105	8468243	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8468244	8468346	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8468347	8468850	0.99	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8468347	8468850	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8468851	8468968	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8468969	8469268	1	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8468969	8469268	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8469269	8469361	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8469362	8469543	1	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8469362	8469543	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8469544	8469637	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8469638	8469749	1	+	1	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8469638	8469749	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	intron	8469750	8469842	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	CDS	8469843	8469941	1	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	exon	8469843	8469941	.	+	.	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
Ledus.S3	AUGUSTUS	stop_codon	8469942	8469944	.	+	0	transcript_id "Ledus.S3G110800.t1"; gene_id "Ledus.S3G110800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7013.t1 is derived from g6544.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	808884	810533	.	+	.	Ledus.C7G007400
Ledus.C7	AUGUSTUS	transcript	808884	810533	.	+	.	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	start_codon	808884	808886	.	+	0	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	CDS	808884	809006	0.63	+	0	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	exon	808884	809006	.	+	.	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	intron	809007	809118	.	+	.	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	CDS	809119	809235	1	+	0	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	exon	809119	809235	.	+	.	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	intron	809236	809367	.	+	.	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	CDS	809368	809466	1	+	0	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	exon	809368	809466	.	+	.	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	intron	809467	809547	.	+	.	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	CDS	809548	809736	0.68	+	0	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	exon	809548	809736	.	+	.	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	intron	809737	809840	.	+	.	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	CDS	809841	810022	0.99	+	0	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	exon	809841	810022	.	+	.	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	intron	810023	810121	.	+	.	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	CDS	810122	810533	0.97	+	1	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	exon	810122	810533	.	+	.	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
Ledus.C7	AUGUSTUS	stop_codon	810534	810536	.	+	0	transcript_id "Ledus.C7G007400.t1"; gene_id "Ledus.C7G007400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12959.t1 is derived from g6769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1055750	1062150	.	+	.	Ledus.S6G002100
Ledus.S6	AUGUSTUS	transcript	1055750	1062150	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	start_codon	1055750	1055752	.	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1055750	1056364	0.93	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1055750	1056364	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1056365	1056470	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1056471	1056679	0.99	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1056471	1056679	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1056680	1056770	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1056771	1056920	1	+	1	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1056771	1056920	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1056921	1057061	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1057062	1057195	1	+	1	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1057062	1057195	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1057196	1057339	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1057340	1057446	1	+	2	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1057340	1057446	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1057447	1057876	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1057877	1057983	1	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1057877	1057983	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1057984	1058088	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1058089	1058227	0.9	+	1	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1058089	1058227	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1058228	1058345	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1058346	1058462	1	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1058346	1058462	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1058463	1058555	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1058556	1058663	0.99	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1058556	1058663	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1058664	1058784	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1058785	1058856	0.99	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1058785	1058856	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1058857	1058940	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1058941	1059063	0.99	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1058941	1059063	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1059064	1059175	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1059176	1059335	1	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1059176	1059335	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1059336	1059502	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1059503	1059624	1	+	2	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1059503	1059624	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1059625	1059901	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1059902	1060039	1	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1059902	1060039	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1060040	1060264	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1060265	1060407	0.99	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1060265	1060407	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1060408	1060526	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1060527	1060589	1	+	1	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1060527	1060589	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1060590	1060704	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1060705	1060768	0.99	+	1	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1060705	1060768	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1060769	1060869	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1060870	1061005	0.97	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1060870	1061005	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1061006	1061193	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1061194	1061267	1	+	2	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1061194	1061267	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1061268	1061462	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1061463	1061557	1	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1061463	1061557	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1061558	1061758	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1061759	1061790	1	+	1	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1061759	1061790	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	intron	1061791	1061926	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	CDS	1061927	1062150	0.73	+	2	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	exon	1061927	1062150	.	+	.	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
Ledus.S6	AUGUSTUS	stop_codon	1062151	1062153	.	+	0	transcript_id "Ledus.S6G002100.t1"; gene_id "Ledus.S6G002100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5453.t1 is derived from g2892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24373928	24375535	.	+	.	Ledus.S1G287400
Ledus.S1	AUGUSTUS	transcript	24373928	24375535	.	+	.	transcript_id "Ledus.S1G287400.t1"; gene_id "Ledus.S1G287400"
Ledus.S1	AUGUSTUS	start_codon	24373928	24373930	.	+	0	transcript_id "Ledus.S1G287400.t1"; gene_id "Ledus.S1G287400"
Ledus.S1	AUGUSTUS	CDS	24373928	24375535	1	+	0	transcript_id "Ledus.S1G287400.t1"; gene_id "Ledus.S1G287400"
Ledus.S1	AUGUSTUS	exon	24373928	24375535	.	+	.	transcript_id "Ledus.S1G287400.t1"; gene_id "Ledus.S1G287400"
Ledus.S1	AUGUSTUS	stop_codon	24375536	24375538	.	+	0	transcript_id "Ledus.S1G287400.t1"; gene_id "Ledus.S1G287400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11926.t1 is derived from g5545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7836081	7840712	.	+	.	Ledus.S4G108200
Ledus.S4	AUGUSTUS	transcript	7836081	7840712	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	start_codon	7836081	7836083	.	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7836081	7836201	0.75	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7836081	7836201	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7836202	7836593	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7836594	7836718	1	+	2	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7836594	7836718	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7836719	7836888	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7836889	7837052	1	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7836889	7837052	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7837053	7837193	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7837194	7837284	1	+	1	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7837194	7837284	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7837285	7837490	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7837491	7837670	1	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7837491	7837670	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7837671	7837768	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7837769	7837849	1	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7837769	7837849	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7837850	7837976	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7837977	7838057	1	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7837977	7838057	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7838058	7838171	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7838172	7838264	1	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7838172	7838264	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7838265	7838364	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7838365	7838445	0.99	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7838365	7838445	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7838446	7838552	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7838553	7838715	0.99	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7838553	7838715	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7838716	7838806	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7838807	7838927	1	+	2	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7838807	7838927	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7838928	7839034	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7839035	7839107	1	+	1	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7839035	7839107	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7839108	7839226	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7839227	7839334	1	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7839227	7839334	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7839335	7839497	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7839498	7839595	1	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7839498	7839595	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7839596	7839689	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7839690	7839735	1	+	1	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7839690	7839735	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7839736	7839896	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7839897	7839993	0.98	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7839897	7839993	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7839994	7840095	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7840096	7840169	1	+	2	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7840096	7840169	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7840170	7840247	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7840248	7840352	1	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7840248	7840352	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7840353	7840443	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7840444	7840524	1	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7840444	7840524	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	intron	7840525	7840610	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	CDS	7840611	7840712	1	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	exon	7840611	7840712	.	+	.	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
Ledus.S4	AUGUSTUS	stop_codon	7840713	7840715	.	+	0	transcript_id "Ledus.S4G108200.t1"; gene_id "Ledus.S4G108200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg604.t1 is derived from g7465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3590289	3591803	.	+	.	Ledus.S2G048600
Ledus.S2	AUGUSTUS	transcript	3590289	3591803	.	+	.	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	start_codon	3590289	3590291	.	+	0	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	CDS	3590289	3590655	0.54	+	0	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	exon	3590289	3590655	.	+	.	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	intron	3590656	3590740	.	+	.	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	CDS	3590741	3590931	1	+	2	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	exon	3590741	3590931	.	+	.	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	intron	3590932	3591113	.	+	.	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	CDS	3591114	3591159	1	+	0	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	exon	3591114	3591159	.	+	.	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	intron	3591160	3591324	.	+	.	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	CDS	3591325	3591407	1	+	2	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	exon	3591325	3591407	.	+	.	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	intron	3591408	3591487	.	+	.	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	CDS	3591488	3591604	1	+	0	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	exon	3591488	3591604	.	+	.	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	intron	3591605	3591734	.	+	.	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	CDS	3591735	3591803	1	+	0	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	exon	3591735	3591803	.	+	.	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
Ledus.S2	AUGUSTUS	stop_codon	3591804	3591806	.	+	0	transcript_id "Ledus.S2G048600.t1"; gene_id "Ledus.S2G048600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4337.t1 is derived from g1773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16453256	16453492	.	+	.	Ledus.S1G175800
Ledus.S1	AUGUSTUS	transcript	16453256	16453492	.	+	.	transcript_id "Ledus.S1G175800.t1"; gene_id "Ledus.S1G175800"
Ledus.S1	AUGUSTUS	start_codon	16453256	16453258	.	+	0	transcript_id "Ledus.S1G175800.t1"; gene_id "Ledus.S1G175800"
Ledus.S1	AUGUSTUS	CDS	16453256	16453492	0.91	+	0	transcript_id "Ledus.S1G175800.t1"; gene_id "Ledus.S1G175800"
Ledus.S1	AUGUSTUS	exon	16453256	16453492	.	+	.	transcript_id "Ledus.S1G175800.t1"; gene_id "Ledus.S1G175800"
Ledus.S1	AUGUSTUS	stop_codon	16453493	16453495	.	+	0	transcript_id "Ledus.S1G175800.t1"; gene_id "Ledus.S1G175800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9705.t1 is derived from g10735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9206742	9208591	.	+	.	Ledus.S3G118200
Ledus.S3	AUGUSTUS	transcript	9206742	9208591	.	+	.	transcript_id "Ledus.S3G118200.t1"; gene_id "Ledus.S3G118200"
Ledus.S3	AUGUSTUS	start_codon	9206742	9206744	.	+	0	transcript_id "Ledus.S3G118200.t1"; gene_id "Ledus.S3G118200"
Ledus.S3	AUGUSTUS	CDS	9206742	9207400	0.51	+	0	transcript_id "Ledus.S3G118200.t1"; gene_id "Ledus.S3G118200"
Ledus.S3	AUGUSTUS	exon	9206742	9207400	.	+	.	transcript_id "Ledus.S3G118200.t1"; gene_id "Ledus.S3G118200"
Ledus.S3	AUGUSTUS	intron	9207401	9207882	.	+	.	transcript_id "Ledus.S3G118200.t1"; gene_id "Ledus.S3G118200"
Ledus.S3	AUGUSTUS	CDS	9207883	9208165	0.69	+	1	transcript_id "Ledus.S3G118200.t1"; gene_id "Ledus.S3G118200"
Ledus.S3	AUGUSTUS	exon	9207883	9208165	.	+	.	transcript_id "Ledus.S3G118200.t1"; gene_id "Ledus.S3G118200"
Ledus.S3	AUGUSTUS	intron	9208166	9208333	.	+	.	transcript_id "Ledus.S3G118200.t1"; gene_id "Ledus.S3G118200"
Ledus.S3	AUGUSTUS	CDS	9208334	9208591	0.56	+	0	transcript_id "Ledus.S3G118200.t1"; gene_id "Ledus.S3G118200"
Ledus.S3	AUGUSTUS	exon	9208334	9208591	.	+	.	transcript_id "Ledus.S3G118200.t1"; gene_id "Ledus.S3G118200"
Ledus.S3	AUGUSTUS	stop_codon	9208592	9208594	.	+	0	transcript_id "Ledus.S3G118200.t1"; gene_id "Ledus.S3G118200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9465.t1 is derived from g10495.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7159283	7160576	.	+	.	Ledus.S3G094200
Ledus.S3	AUGUSTUS	transcript	7159283	7160576	.	+	.	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	start_codon	7159283	7159285	.	+	0	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	CDS	7159283	7159450	1	+	0	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	exon	7159283	7159450	.	+	.	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	intron	7159451	7159533	.	+	.	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	CDS	7159534	7159764	1	+	0	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	exon	7159534	7159764	.	+	.	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	intron	7159765	7159842	.	+	.	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	CDS	7159843	7159956	1	+	0	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	exon	7159843	7159956	.	+	.	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	intron	7159957	7160251	.	+	.	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	CDS	7160252	7160323	0.88	+	0	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	exon	7160252	7160323	.	+	.	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	intron	7160324	7160543	.	+	.	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	CDS	7160544	7160576	0.88	+	0	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	exon	7160544	7160576	.	+	.	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
Ledus.S3	AUGUSTUS	stop_codon	7160577	7160579	.	+	0	transcript_id "Ledus.S3G094200.t1"; gene_id "Ledus.S3G094200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg782.t1 is derived from g7643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5072220	5074906	.	+	.	Ledus.S2G066400
Ledus.S2	AUGUSTUS	transcript	5072220	5074906	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	start_codon	5072220	5072222	.	+	0	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	CDS	5072220	5072234	0.49	+	0	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	exon	5072220	5072234	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	intron	5072235	5072324	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	CDS	5072325	5072878	0.98	+	0	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	exon	5072325	5072878	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	intron	5072879	5072960	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	CDS	5072961	5073183	1	+	1	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	exon	5072961	5073183	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	intron	5073184	5073260	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	CDS	5073261	5073547	1	+	0	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	exon	5073261	5073547	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	intron	5073548	5073632	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	CDS	5073633	5073987	1	+	1	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	exon	5073633	5073987	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	intron	5073988	5074071	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	CDS	5074072	5074340	1	+	0	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	exon	5074072	5074340	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	intron	5074341	5074422	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	CDS	5074423	5074906	0.98	+	1	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	exon	5074423	5074906	.	+	.	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
Ledus.S2	AUGUSTUS	stop_codon	5074907	5074909	.	+	0	transcript_id "Ledus.S2G066400.t1"; gene_id "Ledus.S2G066400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3556.t1 is derived from g992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9542656	9543300	.	+	.	Ledus.S1G097700
Ledus.S1	AUGUSTUS	transcript	9542656	9543300	.	+	.	transcript_id "Ledus.S1G097700.t1"; gene_id "Ledus.S1G097700"
Ledus.S1	AUGUSTUS	start_codon	9542656	9542658	.	+	0	transcript_id "Ledus.S1G097700.t1"; gene_id "Ledus.S1G097700"
Ledus.S1	AUGUSTUS	CDS	9542656	9543300	1	+	0	transcript_id "Ledus.S1G097700.t1"; gene_id "Ledus.S1G097700"
Ledus.S1	AUGUSTUS	exon	9542656	9543300	.	+	.	transcript_id "Ledus.S1G097700.t1"; gene_id "Ledus.S1G097700"
Ledus.S1	AUGUSTUS	stop_codon	9543301	9543303	.	+	0	transcript_id "Ledus.S1G097700.t1"; gene_id "Ledus.S1G097700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6002.t1 is derived from g3445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28221060	28222680	.	+	.	Ledus.S1G342300
Ledus.S1	AUGUSTUS	transcript	28221060	28222680	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	start_codon	28221060	28221062	.	+	0	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	CDS	28221060	28221078	0.32	+	0	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	exon	28221060	28221078	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	intron	28221079	28221198	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	CDS	28221199	28221516	0.33	+	2	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	exon	28221199	28221516	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	intron	28221517	28221881	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	CDS	28221882	28222009	0.9	+	2	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	exon	28221882	28222009	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	intron	28222010	28222124	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	CDS	28222125	28222169	0.87	+	0	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	exon	28222125	28222169	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	intron	28222170	28222278	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	CDS	28222279	28222352	1	+	0	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	exon	28222279	28222352	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	intron	28222353	28222450	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	CDS	28222451	28222500	1	+	1	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	exon	28222451	28222500	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	intron	28222501	28222582	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	CDS	28222583	28222680	1	+	2	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	exon	28222583	28222680	.	+	.	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
Ledus.S1	AUGUSTUS	stop_codon	28222681	28222683	.	+	0	transcript_id "Ledus.S1G342300.t1"; gene_id "Ledus.S1G342300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6050.t1 is derived from g3493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28703892	28710624	.	+	.	Ledus.S1G347100
Ledus.S1	AUGUSTUS	transcript	28703892	28710624	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	start_codon	28703892	28703894	.	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28703892	28704352	1	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28703892	28704352	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28704353	28704435	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28704436	28704556	1	+	1	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28704436	28704556	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28704557	28704636	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28704637	28704725	1	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28704637	28704725	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28704726	28704798	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28704799	28704883	1	+	1	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28704799	28704883	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28704884	28704998	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28704999	28705158	0.73	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28704999	28705158	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28705159	28705265	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28705266	28705342	0.96	+	2	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28705266	28705342	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28705343	28705449	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28705450	28705503	1	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28705450	28705503	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28705504	28705599	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28705600	28705690	1	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28705600	28705690	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28705691	28705768	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28705769	28706070	1	+	2	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28705769	28706070	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28706071	28706158	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28706159	28706440	0.82	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28706159	28706440	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28706441	28706568	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28706569	28706885	0.82	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28706569	28706885	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28706886	28706975	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28706976	28707136	1	+	1	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28706976	28707136	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28707137	28707255	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28707256	28707374	1	+	2	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28707256	28707374	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28707375	28707480	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28707481	28707634	1	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28707481	28707634	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28707635	28707734	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28707735	28708006	1	+	2	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28707735	28708006	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28708007	28708101	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28708102	28708434	0.98	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28708102	28708434	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28708435	28708608	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28708609	28708899	1	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28708609	28708899	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28708900	28708976	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28708977	28709060	0.98	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28708977	28709060	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28709061	28709166	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28709167	28709300	0.98	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28709167	28709300	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28709301	28709373	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28709374	28709601	0.99	+	1	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28709374	28709601	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28709602	28709725	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28709726	28709897	1	+	1	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28709726	28709897	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28709898	28709980	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28709981	28710235	1	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28709981	28710235	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	intron	28710236	28710354	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	CDS	28710355	28710624	0.93	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	exon	28710355	28710624	.	+	.	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
Ledus.S1	AUGUSTUS	stop_codon	28710625	28710627	.	+	0	transcript_id "Ledus.S1G347100.t1"; gene_id "Ledus.S1G347100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6745.t1 is derived from g4188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33708971	33713920	.	+	.	Ledus.S1G416600
Ledus.S1	AUGUSTUS	transcript	33708971	33713920	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	start_codon	33708971	33708973	.	+	0	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33708971	33709097	0.99	+	0	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33708971	33709097	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33709098	33709277	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33709278	33709397	1	+	2	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33709278	33709397	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33709398	33709568	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33709569	33710115	1	+	2	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33709569	33710115	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33710116	33710369	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33710370	33710392	0.8	+	1	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33710370	33710392	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33710393	33710592	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33710593	33710844	0.51	+	2	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33710593	33710844	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33710845	33710983	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33710984	33711110	1	+	2	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33710984	33711110	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33711111	33711249	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33711250	33711321	1	+	1	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33711250	33711321	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33711322	33711440	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33711441	33711512	1	+	1	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33711441	33711512	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33711513	33711698	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33711699	33711770	1	+	1	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33711699	33711770	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33711771	33711951	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33711952	33711973	0.96	+	1	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33711952	33711973	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33711974	33712055	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33712056	33712063	0.94	+	0	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33712056	33712063	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33712064	33712146	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33712147	33712226	0.96	+	1	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33712147	33712226	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33712227	33712368	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33712369	33712559	1	+	2	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33712369	33712559	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33712560	33712742	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33712743	33712878	1	+	0	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33712743	33712878	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33712879	33712977	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33712978	33713066	0.49	+	2	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33712978	33713066	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33713067	33713168	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33713169	33713186	0.49	+	0	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33713169	33713186	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33713187	33713281	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33713282	33713355	0.49	+	0	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33713282	33713355	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33713356	33713464	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33713465	33713600	1	+	1	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33713465	33713600	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	intron	33713601	33713716	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	CDS	33713717	33713920	0.89	+	0	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	exon	33713717	33713920	.	+	.	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
Ledus.S1	AUGUSTUS	stop_codon	33713921	33713923	.	+	0	transcript_id "Ledus.S1G416600.t1"; gene_id "Ledus.S1G416600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg839.t1 is derived from g7700.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5622802	5624656	.	+	.	Ledus.S2G072100
Ledus.S2	AUGUSTUS	transcript	5622802	5624656	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	start_codon	5622802	5622804	.	+	0	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	CDS	5622802	5623071	0.87	+	0	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	exon	5622802	5623071	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	intron	5623072	5623189	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	CDS	5623190	5623280	0.86	+	0	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	exon	5623190	5623280	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	intron	5623281	5623404	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	CDS	5623405	5623487	0.98	+	2	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	exon	5623405	5623487	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	intron	5623488	5623586	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	CDS	5623587	5623724	1	+	0	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	exon	5623587	5623724	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	intron	5623725	5623809	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	CDS	5623810	5623938	0.98	+	0	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	exon	5623810	5623938	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	intron	5623939	5624031	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	CDS	5624032	5624180	1	+	0	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	exon	5624032	5624180	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	intron	5624181	5624268	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	CDS	5624269	5624410	1	+	1	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	exon	5624269	5624410	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	intron	5624411	5624509	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	CDS	5624510	5624656	0.87	+	0	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	exon	5624510	5624656	.	+	.	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
Ledus.S2	AUGUSTUS	stop_codon	5624657	5624659	.	+	0	transcript_id "Ledus.S2G072100.t1"; gene_id "Ledus.S2G072100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4353.t1 is derived from g1789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16541886	16542933	.	-	.	Ledus.S1G177400
Ledus.S1	AUGUSTUS	transcript	16541886	16542933	.	-	.	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	stop_codon	16541883	16541885	.	-	0	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	CDS	16541886	16542004	0.84	-	2	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	exon	16541886	16542004	.	-	.	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	intron	16542005	16542127	.	-	.	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	CDS	16542128	16542284	1	-	0	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	exon	16542128	16542284	.	-	.	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	intron	16542285	16542383	.	-	.	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	CDS	16542384	16542698	1	-	0	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	exon	16542384	16542698	.	-	.	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	intron	16542699	16542894	.	-	.	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	CDS	16542895	16542933	1	-	0	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	exon	16542895	16542933	.	-	.	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
Ledus.S1	AUGUSTUS	start_codon	16542931	16542933	.	-	0	transcript_id "Ledus.S1G177400.t1"; gene_id "Ledus.S1G177400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1316.t1 is derived from g8177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9230079	9231059	.	+	.	Ledus.S2G119800
Ledus.S2	AUGUSTUS	transcript	9230079	9231059	.	+	.	transcript_id "Ledus.S2G119800.t1"; gene_id "Ledus.S2G119800"
Ledus.S2	AUGUSTUS	start_codon	9230079	9230081	.	+	0	transcript_id "Ledus.S2G119800.t1"; gene_id "Ledus.S2G119800"
Ledus.S2	AUGUSTUS	CDS	9230079	9230263	0.4	+	0	transcript_id "Ledus.S2G119800.t1"; gene_id "Ledus.S2G119800"
Ledus.S2	AUGUSTUS	exon	9230079	9230263	.	+	.	transcript_id "Ledus.S2G119800.t1"; gene_id "Ledus.S2G119800"
Ledus.S2	AUGUSTUS	intron	9230264	9230421	.	+	.	transcript_id "Ledus.S2G119800.t1"; gene_id "Ledus.S2G119800"
Ledus.S2	AUGUSTUS	CDS	9230422	9230511	0.53	+	1	transcript_id "Ledus.S2G119800.t1"; gene_id "Ledus.S2G119800"
Ledus.S2	AUGUSTUS	exon	9230422	9230511	.	+	.	transcript_id "Ledus.S2G119800.t1"; gene_id "Ledus.S2G119800"
Ledus.S2	AUGUSTUS	intron	9230512	9231028	.	+	.	transcript_id "Ledus.S2G119800.t1"; gene_id "Ledus.S2G119800"
Ledus.S2	AUGUSTUS	CDS	9231029	9231059	0.52	+	1	transcript_id "Ledus.S2G119800.t1"; gene_id "Ledus.S2G119800"
Ledus.S2	AUGUSTUS	exon	9231029	9231059	.	+	.	transcript_id "Ledus.S2G119800.t1"; gene_id "Ledus.S2G119800"
Ledus.S2	AUGUSTUS	stop_codon	9231060	9231062	.	+	0	transcript_id "Ledus.S2G119800.t1"; gene_id "Ledus.S2G119800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3929.t1 is derived from g1365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13586921	13589305	.	-	.	Ledus.S1G135000
Ledus.S1	AUGUSTUS	transcript	13586921	13589305	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	stop_codon	13586918	13586920	.	-	0	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	CDS	13586921	13587129	1	-	2	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	exon	13586921	13587129	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	intron	13587130	13587250	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	CDS	13587251	13587350	0.8	-	0	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	exon	13587251	13587350	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	intron	13587351	13587452	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	CDS	13587453	13587555	0.77	-	1	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	exon	13587453	13587555	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	intron	13587556	13587715	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	CDS	13587716	13587850	1	-	1	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	exon	13587716	13587850	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	intron	13587851	13587936	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	CDS	13587937	13588088	1	-	0	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	exon	13587937	13588088	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	intron	13588089	13588175	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	CDS	13588176	13588232	1	-	0	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	exon	13588176	13588232	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	intron	13588233	13588351	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	CDS	13588352	13588426	1	-	0	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	exon	13588352	13588426	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	intron	13588427	13588728	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	CDS	13588729	13588839	1	-	0	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	exon	13588729	13588839	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	intron	13588840	13589043	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	CDS	13589044	13589136	0.77	-	0	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	exon	13589044	13589136	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	intron	13589137	13589296	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	CDS	13589297	13589305	0.38	-	0	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	exon	13589297	13589305	.	-	.	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
Ledus.S1	AUGUSTUS	start_codon	13589303	13589305	.	-	0	transcript_id "Ledus.S1G135000.t1"; gene_id "Ledus.S1G135000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12652.t1 is derived from g6274.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13618267	13621147	.	+	.	Ledus.S4G180800
Ledus.S4	AUGUSTUS	transcript	13618267	13621147	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	start_codon	13618267	13618269	.	+	0	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	CDS	13618267	13618773	0.75	+	0	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	exon	13618267	13618773	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	intron	13618774	13618885	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	CDS	13618886	13618976	0.58	+	0	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	exon	13618886	13618976	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	intron	13618977	13619073	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	CDS	13619074	13619129	1	+	2	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	exon	13619074	13619129	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	intron	13619130	13619206	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	CDS	13619207	13619350	1	+	0	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	exon	13619207	13619350	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	intron	13619351	13619438	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	CDS	13619439	13619552	1	+	0	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	exon	13619439	13619552	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	intron	13619553	13619646	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	CDS	13619647	13619714	0.42	+	0	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	exon	13619647	13619714	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	intron	13619715	13619781	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	CDS	13619782	13620234	0.66	+	1	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	exon	13619782	13620234	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	intron	13620235	13620315	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	CDS	13620316	13620623	1	+	1	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	exon	13620316	13620623	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	intron	13620624	13620713	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	CDS	13620714	13620783	1	+	2	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	exon	13620714	13620783	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	intron	13620784	13621035	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	CDS	13621036	13621147	0.99	+	1	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	exon	13621036	13621147	.	+	.	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
Ledus.S4	AUGUSTUS	stop_codon	13621148	13621150	.	+	0	transcript_id "Ledus.S4G180800.t1"; gene_id "Ledus.S4G180800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3974.t1 is derived from g1410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13828395	13828706	.	+	.	Ledus.S1G139500
Ledus.S1	AUGUSTUS	transcript	13828395	13828706	.	+	.	transcript_id "Ledus.S1G139500.t1"; gene_id "Ledus.S1G139500"
Ledus.S1	AUGUSTUS	start_codon	13828395	13828397	.	+	0	transcript_id "Ledus.S1G139500.t1"; gene_id "Ledus.S1G139500"
Ledus.S1	AUGUSTUS	CDS	13828395	13828706	0.85	+	0	transcript_id "Ledus.S1G139500.t1"; gene_id "Ledus.S1G139500"
Ledus.S1	AUGUSTUS	exon	13828395	13828706	.	+	.	transcript_id "Ledus.S1G139500.t1"; gene_id "Ledus.S1G139500"
Ledus.S1	AUGUSTUS	stop_codon	13828707	13828709	.	+	0	transcript_id "Ledus.S1G139500.t1"; gene_id "Ledus.S1G139500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4570.t1 is derived from g2007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17764675	17766910	.	+	.	Ledus.S1G199100
Ledus.S1	AUGUSTUS	transcript	17764675	17766910	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	start_codon	17764675	17764677	.	+	0	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	CDS	17764675	17764719	0.58	+	0	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	exon	17764675	17764719	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	intron	17764720	17764940	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	CDS	17764941	17765085	0.4	+	0	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	exon	17764941	17765085	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	intron	17765086	17765296	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	CDS	17765297	17765714	1	+	2	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	exon	17765297	17765714	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	intron	17765715	17765825	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	CDS	17765826	17765919	1	+	1	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	exon	17765826	17765919	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	intron	17765920	17766017	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	CDS	17766018	17766147	1	+	0	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	exon	17766018	17766147	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	intron	17766148	17766247	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	CDS	17766248	17766380	1	+	2	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	exon	17766248	17766380	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	intron	17766381	17766447	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	CDS	17766448	17766655	1	+	1	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	exon	17766448	17766655	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	intron	17766656	17766748	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	CDS	17766749	17766910	1	+	0	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	exon	17766749	17766910	.	+	.	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
Ledus.S1	AUGUSTUS	stop_codon	17766911	17766913	.	+	0	transcript_id "Ledus.S1G199100.t1"; gene_id "Ledus.S1G199100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8849.t1 is derived from g9879.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2264322	2267799	.	-	.	Ledus.S3G032600
Ledus.S3	AUGUSTUS	transcript	2264322	2267799	.	-	.	transcript_id "Ledus.S3G032600.t1"; gene_id "Ledus.S3G032600"
Ledus.S3	AUGUSTUS	stop_codon	2264319	2264321	.	-	0	transcript_id "Ledus.S3G032600.t1"; gene_id "Ledus.S3G032600"
Ledus.S3	AUGUSTUS	CDS	2264322	2267334	0.94	-	1	transcript_id "Ledus.S3G032600.t1"; gene_id "Ledus.S3G032600"
Ledus.S3	AUGUSTUS	exon	2264322	2267334	.	-	.	transcript_id "Ledus.S3G032600.t1"; gene_id "Ledus.S3G032600"
Ledus.S3	AUGUSTUS	intron	2267335	2267432	.	-	.	transcript_id "Ledus.S3G032600.t1"; gene_id "Ledus.S3G032600"
Ledus.S3	AUGUSTUS	CDS	2267433	2267533	0.95	-	0	transcript_id "Ledus.S3G032600.t1"; gene_id "Ledus.S3G032600"
Ledus.S3	AUGUSTUS	exon	2267433	2267533	.	-	.	transcript_id "Ledus.S3G032600.t1"; gene_id "Ledus.S3G032600"
Ledus.S3	AUGUSTUS	intron	2267534	2267655	.	-	.	transcript_id "Ledus.S3G032600.t1"; gene_id "Ledus.S3G032600"
Ledus.S3	AUGUSTUS	CDS	2267656	2267799	0.92	-	0	transcript_id "Ledus.S3G032600.t1"; gene_id "Ledus.S3G032600"
Ledus.S3	AUGUSTUS	exon	2267656	2267799	.	-	.	transcript_id "Ledus.S3G032600.t1"; gene_id "Ledus.S3G032600"
Ledus.S3	AUGUSTUS	start_codon	2267797	2267799	.	-	0	transcript_id "Ledus.S3G032600.t1"; gene_id "Ledus.S3G032600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5292.t1 is derived from g2731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22883473	22883775	.	+	.	Ledus.S1G271300
Ledus.S1	AUGUSTUS	transcript	22883473	22883775	.	+	.	transcript_id "Ledus.S1G271300.t1"; gene_id "Ledus.S1G271300"
Ledus.S1	AUGUSTUS	start_codon	22883473	22883475	.	+	0	transcript_id "Ledus.S1G271300.t1"; gene_id "Ledus.S1G271300"
Ledus.S1	AUGUSTUS	CDS	22883473	22883775	0.85	+	0	transcript_id "Ledus.S1G271300.t1"; gene_id "Ledus.S1G271300"
Ledus.S1	AUGUSTUS	exon	22883473	22883775	.	+	.	transcript_id "Ledus.S1G271300.t1"; gene_id "Ledus.S1G271300"
Ledus.S1	AUGUSTUS	stop_codon	22883776	22883778	.	+	0	transcript_id "Ledus.S1G271300.t1"; gene_id "Ledus.S1G271300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4428.t1 is derived from g1864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17065871	17067245	.	+	.	Ledus.S1G184900
Ledus.S1	AUGUSTUS	transcript	17065871	17067245	.	+	.	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	start_codon	17065871	17065873	.	+	0	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	CDS	17065871	17065931	1	+	0	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	exon	17065871	17065931	.	+	.	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	intron	17065932	17066083	.	+	.	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	CDS	17066084	17066165	1	+	2	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	exon	17066084	17066165	.	+	.	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	intron	17066166	17066440	.	+	.	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	CDS	17066441	17066578	0.72	+	1	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	exon	17066441	17066578	.	+	.	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	intron	17066579	17066832	.	+	.	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	CDS	17066833	17066845	0.39	+	1	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	exon	17066833	17066845	.	+	.	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	intron	17066846	17066979	.	+	.	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	CDS	17066980	17067105	0.77	+	0	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	exon	17066980	17067105	.	+	.	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	intron	17067106	17067197	.	+	.	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	CDS	17067198	17067245	0.99	+	0	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	exon	17067198	17067245	.	+	.	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
Ledus.S1	AUGUSTUS	stop_codon	17067246	17067248	.	+	0	transcript_id "Ledus.S1G184900.t1"; gene_id "Ledus.S1G184900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1723.t1 is derived from g8584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12137728	12139155	.	-	.	Ledus.S2G160500
Ledus.S2	AUGUSTUS	transcript	12137728	12138798	.	-	.	transcript_id "Ledus.S2G160500.t1"; gene_id "Ledus.S2G160500"
Ledus.S2	AUGUSTUS	stop_codon	12137725	12137727	.	-	0	transcript_id "Ledus.S2G160500.t1"; gene_id "Ledus.S2G160500"
Ledus.S2	AUGUSTUS	CDS	12137728	12138798	0.97	-	0	transcript_id "Ledus.S2G160500.t1"; gene_id "Ledus.S2G160500"
Ledus.S2	AUGUSTUS	exon	12137728	12138798	.	-	.	transcript_id "Ledus.S2G160500.t1"; gene_id "Ledus.S2G160500"
Ledus.S2	AUGUSTUS	start_codon	12138796	12138798	.	-	0	transcript_id "Ledus.S2G160500.t1"; gene_id "Ledus.S2G160500"
Ledus.S2	AUGUSTUS	transcript	12137728	12139155	.	-	.	transcript_id "Ledus.S2G160500.t2"; gene_id "Ledus.S2G160500"
Ledus.S2	AUGUSTUS	stop_codon	12137725	12137727	.	-	0	transcript_id "Ledus.S2G160500.t2"; gene_id "Ledus.S2G160500"
Ledus.S2	AUGUSTUS	CDS	12137728	12139155	0.97	-	0	transcript_id "Ledus.S2G160500.t2"; gene_id "Ledus.S2G160500"
Ledus.S2	AUGUSTUS	exon	12137728	12139155	.	-	.	transcript_id "Ledus.S2G160500.t2"; gene_id "Ledus.S2G160500"
Ledus.S2	AUGUSTUS	start_codon	12139153	12139155	.	-	0	transcript_id "Ledus.S2G160500.t2"; gene_id "Ledus.S2G160500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11810.t1 is derived from g5429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6880311	6881690	.	+	.	Ledus.S4G096600
Ledus.S4	AUGUSTUS	transcript	6880311	6881690	.	+	.	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	start_codon	6880311	6880313	.	+	0	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	CDS	6880311	6880541	0.97	+	0	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	exon	6880311	6880541	.	+	.	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	intron	6880542	6880659	.	+	.	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	CDS	6880660	6880983	1	+	0	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	exon	6880660	6880983	.	+	.	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	intron	6880984	6881073	.	+	.	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	CDS	6881074	6881233	0.85	+	0	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	exon	6881074	6881233	.	+	.	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	intron	6881234	6881412	.	+	.	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	CDS	6881413	6881690	0.68	+	2	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	exon	6881413	6881690	.	+	.	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
Ledus.S4	AUGUSTUS	stop_codon	6881691	6881693	.	+	0	transcript_id "Ledus.S4G096600.t1"; gene_id "Ledus.S4G096600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10918.t1 is derived from g4536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	576131	577564	.	+	.	Ledus.S4G007400
Ledus.S4	AUGUSTUS	transcript	576131	577564	.	+	.	transcript_id "Ledus.S4G007400.t1"; gene_id "Ledus.S4G007400"
Ledus.S4	AUGUSTUS	start_codon	576131	576133	.	+	0	transcript_id "Ledus.S4G007400.t1"; gene_id "Ledus.S4G007400"
Ledus.S4	AUGUSTUS	CDS	576131	577564	0.41	+	0	transcript_id "Ledus.S4G007400.t1"; gene_id "Ledus.S4G007400"
Ledus.S4	AUGUSTUS	exon	576131	577564	.	+	.	transcript_id "Ledus.S4G007400.t1"; gene_id "Ledus.S4G007400"
Ledus.S4	AUGUSTUS	stop_codon	577565	577567	.	+	0	transcript_id "Ledus.S4G007400.t1"; gene_id "Ledus.S4G007400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8907.t1 is derived from g9937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2975576	2983115	.	-	.	Ledus.S3G038400
Ledus.S3	AUGUSTUS	transcript	2975576	2983115	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	stop_codon	2975573	2975575	.	-	0	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	CDS	2975576	2975842	0.99	-	0	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	exon	2975576	2975842	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	intron	2975843	2975929	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	CDS	2975930	2976067	1	-	0	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	exon	2975930	2976067	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	intron	2976068	2976200	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	CDS	2976201	2976279	1	-	1	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	exon	2976201	2976279	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	intron	2976280	2976383	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	CDS	2976384	2976634	1	-	0	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	exon	2976384	2976634	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	intron	2976635	2977066	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	CDS	2977067	2977273	1	-	0	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	exon	2977067	2977273	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	intron	2977274	2977413	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	CDS	2977414	2977486	1	-	1	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	exon	2977414	2977486	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	intron	2977487	2977698	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	CDS	2977699	2977934	1	-	0	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	exon	2977699	2977934	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	intron	2977935	2978100	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	CDS	2978101	2978253	1	-	0	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	exon	2978101	2978253	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	intron	2978254	2978373	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	CDS	2978374	2978509	1	-	1	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	exon	2978374	2978509	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	intron	2978510	2978803	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	CDS	2978804	2979043	1	-	1	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	exon	2978804	2979043	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	intron	2979044	2980179	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	CDS	2980180	2983115	0.16	-	0	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	exon	2980180	2983115	.	-	.	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
Ledus.S3	AUGUSTUS	start_codon	2983113	2983115	.	-	0	transcript_id "Ledus.S3G038400.t1"; gene_id "Ledus.S3G038400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3248.t1 is derived from g683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7108496	7110652	.	-	.	Ledus.S1G066900
Ledus.S1	AUGUSTUS	transcript	7108496	7110652	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	stop_codon	7108493	7108495	.	-	0	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	CDS	7108496	7108589	1	-	1	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	exon	7108496	7108589	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	intron	7108590	7108720	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	CDS	7108721	7108839	1	-	0	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	exon	7108721	7108839	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	intron	7108840	7108949	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	CDS	7108950	7109028	1	-	1	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	exon	7108950	7109028	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	intron	7109029	7109157	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	CDS	7109158	7109231	1	-	0	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	exon	7109158	7109231	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	intron	7109232	7109318	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	CDS	7109319	7109442	0.68	-	1	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	exon	7109319	7109442	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	intron	7109443	7109519	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	CDS	7109520	7109622	0.94	-	2	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	exon	7109520	7109622	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	intron	7109623	7109744	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	CDS	7109745	7109888	0.75	-	2	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	exon	7109745	7109888	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	intron	7109889	7109965	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	CDS	7109966	7110097	1	-	2	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	exon	7109966	7110097	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	intron	7110098	7110311	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	CDS	7110312	7110409	0.99	-	1	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	exon	7110312	7110409	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	intron	7110410	7110527	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	CDS	7110528	7110652	0.73	-	0	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	exon	7110528	7110652	.	-	.	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
Ledus.S1	AUGUSTUS	start_codon	7110650	7110652	.	-	0	transcript_id "Ledus.S1G066900.t1"; gene_id "Ledus.S1G066900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8164.t1 is derived from g12835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9566051	9566845	.	+	.	Ledus.S5G094200
Ledus.S5	AUGUSTUS	transcript	9566051	9566845	.	+	.	transcript_id "Ledus.S5G094200.t1"; gene_id "Ledus.S5G094200"
Ledus.S5	AUGUSTUS	start_codon	9566051	9566053	.	+	0	transcript_id "Ledus.S5G094200.t1"; gene_id "Ledus.S5G094200"
Ledus.S5	AUGUSTUS	CDS	9566051	9566845	0.94	+	0	transcript_id "Ledus.S5G094200.t1"; gene_id "Ledus.S5G094200"
Ledus.S5	AUGUSTUS	exon	9566051	9566845	.	+	.	transcript_id "Ledus.S5G094200.t1"; gene_id "Ledus.S5G094200"
Ledus.S5	AUGUSTUS	stop_codon	9566846	9566848	.	+	0	transcript_id "Ledus.S5G094200.t1"; gene_id "Ledus.S5G094200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8636.t1 is derived from g9666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	985583	986041	.	+	.	Ledus.S3G011300
Ledus.S3	AUGUSTUS	transcript	985583	986041	.	+	.	transcript_id "Ledus.S3G011300.t1"; gene_id "Ledus.S3G011300"
Ledus.S3	AUGUSTUS	start_codon	985583	985585	.	+	0	transcript_id "Ledus.S3G011300.t1"; gene_id "Ledus.S3G011300"
Ledus.S3	AUGUSTUS	CDS	985583	985806	0.67	+	0	transcript_id "Ledus.S3G011300.t1"; gene_id "Ledus.S3G011300"
Ledus.S3	AUGUSTUS	exon	985583	985806	.	+	.	transcript_id "Ledus.S3G011300.t1"; gene_id "Ledus.S3G011300"
Ledus.S3	AUGUSTUS	intron	985807	985875	.	+	.	transcript_id "Ledus.S3G011300.t1"; gene_id "Ledus.S3G011300"
Ledus.S3	AUGUSTUS	CDS	985876	986041	0.99	+	1	transcript_id "Ledus.S3G011300.t1"; gene_id "Ledus.S3G011300"
Ledus.S3	AUGUSTUS	exon	985876	986041	.	+	.	transcript_id "Ledus.S3G011300.t1"; gene_id "Ledus.S3G011300"
Ledus.S3	AUGUSTUS	stop_codon	986042	986044	.	+	0	transcript_id "Ledus.S3G011300.t1"; gene_id "Ledus.S3G011300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4662.t1 is derived from g2100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18820242	18822777	.	+	.	Ledus.S1G208300
Ledus.S1	AUGUSTUS	transcript	18820242	18822777	.	+	.	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	start_codon	18820242	18820244	.	+	0	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	CDS	18820242	18820320	0.9	+	0	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	exon	18820242	18820320	.	+	.	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	intron	18820321	18820398	.	+	.	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	CDS	18820399	18820568	1	+	2	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	exon	18820399	18820568	.	+	.	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	intron	18820569	18820662	.	+	.	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	CDS	18820663	18820821	1	+	0	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	exon	18820663	18820821	.	+	.	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	intron	18820822	18821190	.	+	.	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	CDS	18821191	18822777	1	+	0	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	exon	18821191	18822777	.	+	.	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
Ledus.S1	AUGUSTUS	stop_codon	18822778	18822780	.	+	0	transcript_id "Ledus.S1G208300.t1"; gene_id "Ledus.S1G208300"
# This transcript jg8089.t2 is derived from g12760.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8090.t1 is derived from g12761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9107469	9108005	.	+	.	Ledus.S5G086800
Ledus.S5	AUGUSTUS	transcript	9107469	9108005	.	+	.	transcript_id "Ledus.S5G086800.t1"; gene_id "Ledus.S5G086800"
Ledus.S5	AUGUSTUS	start_codon	9107469	9107471	.	+	0	transcript_id "Ledus.S5G086800.t1"; gene_id "Ledus.S5G086800"
Ledus.S5	AUGUSTUS	CDS	9107469	9108005	0.74	+	0	transcript_id "Ledus.S5G086800.t1"; gene_id "Ledus.S5G086800"
Ledus.S5	AUGUSTUS	exon	9107469	9108005	.	+	.	transcript_id "Ledus.S5G086800.t1"; gene_id "Ledus.S5G086800"
Ledus.S5	AUGUSTUS	stop_codon	9108006	9108008	.	+	0	transcript_id "Ledus.S5G086800.t1"; gene_id "Ledus.S5G086800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4818.t1 is derived from g2256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19941349	19942819	.	-	.	Ledus.S1G223900
Ledus.S1	AUGUSTUS	transcript	19941349	19942819	.	-	.	transcript_id "Ledus.S1G223900.t1"; gene_id "Ledus.S1G223900"
Ledus.S1	AUGUSTUS	stop_codon	19941346	19941348	.	-	0	transcript_id "Ledus.S1G223900.t1"; gene_id "Ledus.S1G223900"
Ledus.S1	AUGUSTUS	CDS	19941349	19941371	0.32	-	2	transcript_id "Ledus.S1G223900.t1"; gene_id "Ledus.S1G223900"
Ledus.S1	AUGUSTUS	exon	19941349	19941371	.	-	.	transcript_id "Ledus.S1G223900.t1"; gene_id "Ledus.S1G223900"
Ledus.S1	AUGUSTUS	intron	19941372	19941460	.	-	.	transcript_id "Ledus.S1G223900.t1"; gene_id "Ledus.S1G223900"
Ledus.S1	AUGUSTUS	CDS	19941461	19941670	0.76	-	2	transcript_id "Ledus.S1G223900.t1"; gene_id "Ledus.S1G223900"
Ledus.S1	AUGUSTUS	exon	19941461	19941670	.	-	.	transcript_id "Ledus.S1G223900.t1"; gene_id "Ledus.S1G223900"
Ledus.S1	AUGUSTUS	intron	19941671	19941768	.	-	.	transcript_id "Ledus.S1G223900.t1"; gene_id "Ledus.S1G223900"
Ledus.S1	AUGUSTUS	CDS	19941769	19942819	0.84	-	0	transcript_id "Ledus.S1G223900.t1"; gene_id "Ledus.S1G223900"
Ledus.S1	AUGUSTUS	exon	19941769	19942819	.	-	.	transcript_id "Ledus.S1G223900.t1"; gene_id "Ledus.S1G223900"
Ledus.S1	AUGUSTUS	start_codon	19942817	19942819	.	-	0	transcript_id "Ledus.S1G223900.t1"; gene_id "Ledus.S1G223900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3736.t1 is derived from g1172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11256725	11258252	.	+	.	Ledus.S1G115700
Ledus.S1	AUGUSTUS	transcript	11256725	11258252	.	+	.	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	start_codon	11256725	11256727	.	+	0	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	CDS	11256725	11257000	0.64	+	0	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	exon	11256725	11257000	.	+	.	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	intron	11257001	11257111	.	+	.	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	CDS	11257112	11257243	0.97	+	0	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	exon	11257112	11257243	.	+	.	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	intron	11257244	11257349	.	+	.	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	CDS	11257350	11257434	0.98	+	0	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	exon	11257350	11257434	.	+	.	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	intron	11257435	11257523	.	+	.	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	CDS	11257524	11257687	1	+	2	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	exon	11257524	11257687	.	+	.	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	intron	11257688	11257793	.	+	.	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	CDS	11257794	11258252	0.93	+	0	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	exon	11257794	11258252	.	+	.	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
Ledus.S1	AUGUSTUS	stop_codon	11258253	11258255	.	+	0	transcript_id "Ledus.S1G115700.t1"; gene_id "Ledus.S1G115700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9461.t1 is derived from g10491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7140774	7148073	.	-	.	Ledus.S3G093800
Ledus.S3	AUGUSTUS	transcript	7140774	7148073	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	stop_codon	7140771	7140773	.	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7140774	7140874	1	-	2	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7140774	7140874	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7140875	7140968	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7140969	7141017	0.94	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7140969	7141017	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7141018	7141110	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7141111	7141140	0.99	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7141111	7141140	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7141141	7141220	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7141221	7141297	0.98	-	2	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7141221	7141297	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7141298	7141387	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7141388	7141449	0.99	-	1	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7141388	7141449	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7141450	7141703	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7141704	7141872	0.84	-	2	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7141704	7141872	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7141873	7141954	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7141955	7142227	1	-	2	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7141955	7142227	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7142228	7142323	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7142324	7142497	1	-	2	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7142324	7142497	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7142498	7142634	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7142635	7142826	0.92	-	2	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7142635	7142826	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7142827	7142950	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7142951	7143067	0.97	-	2	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7142951	7143067	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7143068	7143189	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7143190	7143247	1	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7143190	7143247	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7143248	7143442	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7143443	7143595	0.99	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7143443	7143595	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7143596	7143701	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7143702	7143761	0.98	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7143702	7143761	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7143762	7143873	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7143874	7143970	0.97	-	1	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7143874	7143970	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7143971	7144153	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7144154	7144218	1	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7144154	7144218	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7144219	7144355	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7144356	7144496	0.99	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7144356	7144496	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7144497	7144603	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7144604	7144672	1	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7144604	7144672	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7144673	7144803	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7144804	7144862	1	-	2	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7144804	7144862	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7144863	7144957	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7144958	7145078	1	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7144958	7145078	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7145079	7145186	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7145187	7145250	1	-	1	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7145187	7145250	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7145251	7145398	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7145399	7145445	1	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7145399	7145445	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7145446	7145795	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7145796	7145924	1	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7145796	7145924	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7145925	7146409	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7146410	7146550	1	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7146410	7146550	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7146551	7146669	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7146670	7146731	1	-	2	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7146670	7146731	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7146732	7146888	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7146889	7146989	1	-	1	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7146889	7146989	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7146990	7147106	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7147107	7147216	1	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7147107	7147216	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7147217	7147337	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7147338	7147400	0.99	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7147338	7147400	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7147401	7147504	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7147505	7147582	1	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7147505	7147582	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	intron	7147583	7147713	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	CDS	7147714	7148073	1	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	exon	7147714	7148073	.	-	.	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
Ledus.S3	AUGUSTUS	start_codon	7148071	7148073	.	-	0	transcript_id "Ledus.S3G093800.t1"; gene_id "Ledus.S3G093800"
# This transcript jg2710.t2 is derived from g143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2711.t1 is derived from g144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2328750	2330213	.	+	.	Ledus.S1G013200
Ledus.S1	AUGUSTUS	transcript	2329599	2330213	.	+	.	transcript_id "Ledus.S1G013200.t1"; gene_id "Ledus.S1G013200"
Ledus.S1	AUGUSTUS	start_codon	2329599	2329601	.	+	0	transcript_id "Ledus.S1G013200.t1"; gene_id "Ledus.S1G013200"
Ledus.S1	AUGUSTUS	CDS	2329599	2330213	0.99	+	0	transcript_id "Ledus.S1G013200.t1"; gene_id "Ledus.S1G013200"
Ledus.S1	AUGUSTUS	exon	2329599	2330213	.	+	.	transcript_id "Ledus.S1G013200.t1"; gene_id "Ledus.S1G013200"
Ledus.S1	AUGUSTUS	stop_codon	2330214	2330216	.	+	0	transcript_id "Ledus.S1G013200.t1"; gene_id "Ledus.S1G013200"
Ledus.S1	AUGUSTUS	transcript	2328750	2330213	.	+	.	transcript_id "Ledus.S1G013200.t2"; gene_id "Ledus.S1G013200"
Ledus.S1	AUGUSTUS	start_codon	2328750	2328752	.	+	0	transcript_id "Ledus.S1G013200.t2"; gene_id "Ledus.S1G013200"
Ledus.S1	AUGUSTUS	CDS	2328750	2330213	0.43	+	0	transcript_id "Ledus.S1G013200.t2"; gene_id "Ledus.S1G013200"
Ledus.S1	AUGUSTUS	exon	2328750	2330213	.	+	.	transcript_id "Ledus.S1G013200.t2"; gene_id "Ledus.S1G013200"
Ledus.S1	AUGUSTUS	stop_codon	2330214	2330216	.	+	0	transcript_id "Ledus.S1G013200.t2"; gene_id "Ledus.S1G013200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6621.t1 is derived from g4064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32757548	32759138	.	-	.	Ledus.S1G404200
Ledus.S1	AUGUSTUS	transcript	32757548	32759138	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	stop_codon	32757545	32757547	.	-	0	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	CDS	32757548	32757768	1	-	2	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	exon	32757548	32757768	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	intron	32757769	32757846	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	CDS	32757847	32757946	1	-	0	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	exon	32757847	32757946	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	intron	32757947	32758035	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	CDS	32758036	32758132	1	-	1	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	exon	32758036	32758132	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	intron	32758133	32758210	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	CDS	32758211	32758261	1	-	1	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	exon	32758211	32758261	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	intron	32758262	32758341	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	CDS	32758342	32758618	1	-	2	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	exon	32758342	32758618	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	intron	32758619	32758731	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	CDS	32758732	32758848	0.99	-	2	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	exon	32758732	32758848	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	intron	32758849	32758963	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	CDS	32758964	32759138	1	-	0	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	exon	32758964	32759138	.	-	.	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
Ledus.S1	AUGUSTUS	start_codon	32759136	32759138	.	-	0	transcript_id "Ledus.S1G404200.t1"; gene_id "Ledus.S1G404200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7230.t1 is derived from g11901.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	172854	175072	.	-	.	Ledus.S5G000800
Ledus.S5	AUGUSTUS	transcript	172854	175072	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	stop_codon	172851	172853	.	-	0	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	172854	173123	0.93	-	0	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	172854	173123	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	173124	173216	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	173217	173379	0.76	-	1	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	173217	173379	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	173380	173458	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	173459	173932	0.37	-	1	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	173459	173932	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	173933	174007	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	174008	174401	0.38	-	2	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	174008	174401	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	174402	174469	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	174470	174505	0.98	-	2	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	174470	174505	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	174506	174704	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	174705	174821	0.48	-	2	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	174705	174821	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	174822	175017	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	175018	175072	0.41	-	0	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	175018	175072	.	-	.	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	start_codon	175070	175072	.	-	0	transcript_id "Ledus.S5G000800.t1"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	transcript	172854	175072	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	stop_codon	172851	172853	.	-	0	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	172854	173123	0.9	-	0	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	172854	173123	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	173124	173216	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	173217	173379	0.75	-	1	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	173217	173379	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	173380	173458	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	173459	173932	0.44	-	1	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	173459	173932	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	173933	174007	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	174008	174401	0.4	-	2	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	174008	174401	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	174402	174469	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	174470	174505	0.69	-	2	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	174470	174505	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	174506	174740	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	174741	174821	0.44	-	2	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	174741	174821	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	174822	175017	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	175018	175072	0.49	-	0	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	175018	175072	.	-	.	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	start_codon	175070	175072	.	-	0	transcript_id "Ledus.S5G000800.t2"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	transcript	172854	175072	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	stop_codon	172851	172853	.	-	0	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	172854	173123	0.93	-	0	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	172854	173123	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	173124	173216	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	173217	173379	0.73	-	1	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	173217	173379	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	173380	173458	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	173459	173932	0.44	-	1	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	173459	173932	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	173933	174007	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	174008	174397	0.39	-	1	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	174008	174397	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	174398	174469	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	174470	174505	0.86	-	1	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	174470	174505	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	174506	174590	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	174591	174624	0.46	-	2	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	174591	174624	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	174625	174704	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	174705	174821	0.27	-	2	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	174705	174821	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	intron	174822	175017	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	CDS	175018	175072	0.29	-	0	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	exon	175018	175072	.	-	.	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
Ledus.S5	AUGUSTUS	start_codon	175070	175072	.	-	0	transcript_id "Ledus.S5G000800.t3"; gene_id "Ledus.S5G000800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6264.t1 is derived from g3707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29980743	29981303	.	-	.	Ledus.S1G368500
Ledus.S1	AUGUSTUS	transcript	29980743	29981303	.	-	.	transcript_id "Ledus.S1G368500.t1"; gene_id "Ledus.S1G368500"
Ledus.S1	AUGUSTUS	stop_codon	29980740	29980742	.	-	0	transcript_id "Ledus.S1G368500.t1"; gene_id "Ledus.S1G368500"
Ledus.S1	AUGUSTUS	CDS	29980743	29980898	0.55	-	0	transcript_id "Ledus.S1G368500.t1"; gene_id "Ledus.S1G368500"
Ledus.S1	AUGUSTUS	exon	29980743	29980898	.	-	.	transcript_id "Ledus.S1G368500.t1"; gene_id "Ledus.S1G368500"
Ledus.S1	AUGUSTUS	intron	29980899	29981054	.	-	.	transcript_id "Ledus.S1G368500.t1"; gene_id "Ledus.S1G368500"
Ledus.S1	AUGUSTUS	CDS	29981055	29981303	0.92	-	0	transcript_id "Ledus.S1G368500.t1"; gene_id "Ledus.S1G368500"
Ledus.S1	AUGUSTUS	exon	29981055	29981303	.	-	.	transcript_id "Ledus.S1G368500.t1"; gene_id "Ledus.S1G368500"
Ledus.S1	AUGUSTUS	start_codon	29981301	29981303	.	-	0	transcript_id "Ledus.S1G368500.t1"; gene_id "Ledus.S1G368500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4671.t1 is derived from g2109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18918729	18921576	.	+	.	Ledus.S1G209200
Ledus.S1	AUGUSTUS	transcript	18918729	18921576	.	+	.	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	start_codon	18918729	18918731	.	+	0	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	CDS	18918729	18920107	1	+	0	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	exon	18918729	18920107	.	+	.	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	intron	18920108	18920209	.	+	.	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	CDS	18920210	18920246	0.99	+	1	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	exon	18920210	18920246	.	+	.	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	intron	18920247	18920353	.	+	.	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	CDS	18920354	18920487	0.99	+	0	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	exon	18920354	18920487	.	+	.	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	intron	18920488	18920571	.	+	.	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	CDS	18920572	18920894	1	+	1	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	exon	18920572	18920894	.	+	.	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	intron	18920895	18921131	.	+	.	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	CDS	18921132	18921190	0.47	+	2	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	exon	18921132	18921190	.	+	.	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	intron	18921191	18921303	.	+	.	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	CDS	18921304	18921576	0.46	+	0	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	exon	18921304	18921576	.	+	.	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
Ledus.S1	AUGUSTUS	stop_codon	18921577	18921579	.	+	0	transcript_id "Ledus.S1G209200.t1"; gene_id "Ledus.S1G209200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3795.t1 is derived from g1231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12265540	12265797	.	+	.	Ledus.S1G121600
Ledus.S1	AUGUSTUS	transcript	12265540	12265797	.	+	.	transcript_id "Ledus.S1G121600.t1"; gene_id "Ledus.S1G121600"
Ledus.S1	AUGUSTUS	start_codon	12265540	12265542	.	+	0	transcript_id "Ledus.S1G121600.t1"; gene_id "Ledus.S1G121600"
Ledus.S1	AUGUSTUS	CDS	12265540	12265797	0.72	+	0	transcript_id "Ledus.S1G121600.t1"; gene_id "Ledus.S1G121600"
Ledus.S1	AUGUSTUS	exon	12265540	12265797	.	+	.	transcript_id "Ledus.S1G121600.t1"; gene_id "Ledus.S1G121600"
Ledus.S1	AUGUSTUS	stop_codon	12265798	12265800	.	+	0	transcript_id "Ledus.S1G121600.t1"; gene_id "Ledus.S1G121600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1400.t1 is derived from g8261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9885946	9887785	.	+	.	Ledus.S2G128200
Ledus.S2	AUGUSTUS	transcript	9885946	9887785	.	+	.	transcript_id "Ledus.S2G128200.t1"; gene_id "Ledus.S2G128200"
Ledus.S2	AUGUSTUS	start_codon	9885946	9885948	.	+	0	transcript_id "Ledus.S2G128200.t1"; gene_id "Ledus.S2G128200"
Ledus.S2	AUGUSTUS	CDS	9885946	9886551	0.92	+	0	transcript_id "Ledus.S2G128200.t1"; gene_id "Ledus.S2G128200"
Ledus.S2	AUGUSTUS	exon	9885946	9886551	.	+	.	transcript_id "Ledus.S2G128200.t1"; gene_id "Ledus.S2G128200"
Ledus.S2	AUGUSTUS	intron	9886552	9886636	.	+	.	transcript_id "Ledus.S2G128200.t1"; gene_id "Ledus.S2G128200"
Ledus.S2	AUGUSTUS	CDS	9886637	9887785	1	+	0	transcript_id "Ledus.S2G128200.t1"; gene_id "Ledus.S2G128200"
Ledus.S2	AUGUSTUS	exon	9886637	9887785	.	+	.	transcript_id "Ledus.S2G128200.t1"; gene_id "Ledus.S2G128200"
Ledus.S2	AUGUSTUS	stop_codon	9887786	9887788	.	+	0	transcript_id "Ledus.S2G128200.t1"; gene_id "Ledus.S2G128200"
# This transcript jg5196.t2 is derived from g2635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5197.t1 is derived from g2636.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22424858	22428940	.	-	.	Ledus.S1G261800
Ledus.S1	AUGUSTUS	transcript	22424858	22428940	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	stop_codon	22424855	22424857	.	-	0	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	CDS	22424858	22425068	0.96	-	1	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	exon	22424858	22425068	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	intron	22425069	22425274	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	CDS	22425275	22425471	1	-	0	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	exon	22425275	22425471	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	intron	22425472	22425571	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	CDS	22425572	22425638	1	-	1	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	exon	22425572	22425638	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	intron	22425639	22425794	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	CDS	22425795	22426018	0.9	-	0	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	exon	22425795	22426018	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	intron	22426019	22426193	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	CDS	22426194	22426571	0.93	-	0	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	exon	22426194	22426571	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	intron	22426572	22426674	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	CDS	22426675	22427166	1	-	0	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	exon	22426675	22427166	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	intron	22427167	22427273	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	CDS	22427274	22427650	1	-	2	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	exon	22427274	22427650	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	intron	22427651	22427781	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	CDS	22427782	22428940	0.59	-	0	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	exon	22427782	22428940	.	-	.	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
Ledus.S1	AUGUSTUS	start_codon	22428938	22428940	.	-	0	transcript_id "Ledus.S1G261800.t1"; gene_id "Ledus.S1G261800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3631.t1 is derived from g1067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10305293	10310669	.	-	.	Ledus.S1G105200
Ledus.S1	AUGUSTUS	transcript	10305293	10310669	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	stop_codon	10305290	10305292	.	-	0	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	CDS	10305293	10305340	0.97	-	0	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	exon	10305293	10305340	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	intron	10305341	10305436	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	CDS	10305437	10305715	1	-	0	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	exon	10305437	10305715	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	intron	10305716	10305936	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	CDS	10305937	10306540	1	-	1	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	exon	10305937	10306540	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	intron	10306541	10306753	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	CDS	10306754	10307433	1	-	0	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	exon	10306754	10307433	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	intron	10307434	10307536	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	CDS	10307537	10308034	0.87	-	0	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	exon	10307537	10308034	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	intron	10308035	10308485	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	CDS	10308486	10308775	1	-	2	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	exon	10308486	10308775	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	intron	10308776	10309054	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	CDS	10309055	10309418	1	-	0	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	exon	10309055	10309418	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	intron	10309419	10309615	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	CDS	10309616	10309661	0.96	-	1	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	exon	10309616	10309661	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	intron	10309662	10309775	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	CDS	10309776	10309864	0.95	-	0	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	exon	10309776	10309864	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	intron	10309865	10310098	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	CDS	10310099	10310214	1	-	2	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	exon	10310099	10310214	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	intron	10310215	10310356	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	CDS	10310357	10310669	0.32	-	0	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	exon	10310357	10310669	.	-	.	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
Ledus.S1	AUGUSTUS	start_codon	10310667	10310669	.	-	0	transcript_id "Ledus.S1G105200.t1"; gene_id "Ledus.S1G105200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8916.t1 is derived from g9946.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3122273	3122737	.	+	.	Ledus.S3G039300
Ledus.S3	AUGUSTUS	transcript	3122273	3122737	.	+	.	transcript_id "Ledus.S3G039300.t1"; gene_id "Ledus.S3G039300"
Ledus.S3	AUGUSTUS	start_codon	3122273	3122275	.	+	0	transcript_id "Ledus.S3G039300.t1"; gene_id "Ledus.S3G039300"
Ledus.S3	AUGUSTUS	CDS	3122273	3122276	0.64	+	0	transcript_id "Ledus.S3G039300.t1"; gene_id "Ledus.S3G039300"
Ledus.S3	AUGUSTUS	exon	3122273	3122276	.	+	.	transcript_id "Ledus.S3G039300.t1"; gene_id "Ledus.S3G039300"
Ledus.S3	AUGUSTUS	intron	3122277	3122425	.	+	.	transcript_id "Ledus.S3G039300.t1"; gene_id "Ledus.S3G039300"
Ledus.S3	AUGUSTUS	CDS	3122426	3122630	0.91	+	2	transcript_id "Ledus.S3G039300.t1"; gene_id "Ledus.S3G039300"
Ledus.S3	AUGUSTUS	exon	3122426	3122630	.	+	.	transcript_id "Ledus.S3G039300.t1"; gene_id "Ledus.S3G039300"
Ledus.S3	AUGUSTUS	intron	3122631	3122700	.	+	.	transcript_id "Ledus.S3G039300.t1"; gene_id "Ledus.S3G039300"
Ledus.S3	AUGUSTUS	CDS	3122701	3122737	0.91	+	1	transcript_id "Ledus.S3G039300.t1"; gene_id "Ledus.S3G039300"
Ledus.S3	AUGUSTUS	exon	3122701	3122737	.	+	.	transcript_id "Ledus.S3G039300.t1"; gene_id "Ledus.S3G039300"
Ledus.S3	AUGUSTUS	stop_codon	3122738	3122740	.	+	0	transcript_id "Ledus.S3G039300.t1"; gene_id "Ledus.S3G039300"
# This transcript jg5078.t2 is derived from g2517.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5079.t1 is derived from g2518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21476653	21478099	.	+	.	Ledus.S1G250000
Ledus.S1	AUGUSTUS	transcript	21476653	21478099	.	+	.	transcript_id "Ledus.S1G250000.t1"; gene_id "Ledus.S1G250000"
Ledus.S1	AUGUSTUS	start_codon	21476653	21476655	.	+	0	transcript_id "Ledus.S1G250000.t1"; gene_id "Ledus.S1G250000"
Ledus.S1	AUGUSTUS	CDS	21476653	21477418	0.99	+	0	transcript_id "Ledus.S1G250000.t1"; gene_id "Ledus.S1G250000"
Ledus.S1	AUGUSTUS	exon	21476653	21477418	.	+	.	transcript_id "Ledus.S1G250000.t1"; gene_id "Ledus.S1G250000"
Ledus.S1	AUGUSTUS	intron	21477419	21477509	.	+	.	transcript_id "Ledus.S1G250000.t1"; gene_id "Ledus.S1G250000"
Ledus.S1	AUGUSTUS	CDS	21477510	21477790	1	+	2	transcript_id "Ledus.S1G250000.t1"; gene_id "Ledus.S1G250000"
Ledus.S1	AUGUSTUS	exon	21477510	21477790	.	+	.	transcript_id "Ledus.S1G250000.t1"; gene_id "Ledus.S1G250000"
Ledus.S1	AUGUSTUS	intron	21477791	21477868	.	+	.	transcript_id "Ledus.S1G250000.t1"; gene_id "Ledus.S1G250000"
Ledus.S1	AUGUSTUS	CDS	21477869	21478099	0.83	+	0	transcript_id "Ledus.S1G250000.t1"; gene_id "Ledus.S1G250000"
Ledus.S1	AUGUSTUS	exon	21477869	21478099	.	+	.	transcript_id "Ledus.S1G250000.t1"; gene_id "Ledus.S1G250000"
Ledus.S1	AUGUSTUS	stop_codon	21478100	21478102	.	+	0	transcript_id "Ledus.S1G250000.t1"; gene_id "Ledus.S1G250000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10284.t1 is derived from g11314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14008595	14009520	.	-	.	Ledus.S3G176100
Ledus.S3	AUGUSTUS	transcript	14008595	14009520	.	-	.	transcript_id "Ledus.S3G176100.t1"; gene_id "Ledus.S3G176100"
Ledus.S3	AUGUSTUS	stop_codon	14008592	14008594	.	-	0	transcript_id "Ledus.S3G176100.t1"; gene_id "Ledus.S3G176100"
Ledus.S3	AUGUSTUS	CDS	14008595	14008915	0.59	-	0	transcript_id "Ledus.S3G176100.t1"; gene_id "Ledus.S3G176100"
Ledus.S3	AUGUSTUS	exon	14008595	14008915	.	-	.	transcript_id "Ledus.S3G176100.t1"; gene_id "Ledus.S3G176100"
Ledus.S3	AUGUSTUS	intron	14008916	14009099	.	-	.	transcript_id "Ledus.S3G176100.t1"; gene_id "Ledus.S3G176100"
Ledus.S3	AUGUSTUS	CDS	14009100	14009288	0.77	-	0	transcript_id "Ledus.S3G176100.t1"; gene_id "Ledus.S3G176100"
Ledus.S3	AUGUSTUS	exon	14009100	14009288	.	-	.	transcript_id "Ledus.S3G176100.t1"; gene_id "Ledus.S3G176100"
Ledus.S3	AUGUSTUS	intron	14009289	14009364	.	-	.	transcript_id "Ledus.S3G176100.t1"; gene_id "Ledus.S3G176100"
Ledus.S3	AUGUSTUS	CDS	14009365	14009520	0.92	-	0	transcript_id "Ledus.S3G176100.t1"; gene_id "Ledus.S3G176100"
Ledus.S3	AUGUSTUS	exon	14009365	14009520	.	-	.	transcript_id "Ledus.S3G176100.t1"; gene_id "Ledus.S3G176100"
Ledus.S3	AUGUSTUS	start_codon	14009518	14009520	.	-	0	transcript_id "Ledus.S3G176100.t1"; gene_id "Ledus.S3G176100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2311.t1 is derived from g9174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17127709	17128304	.	-	.	Ledus.S2G219300
Ledus.S2	AUGUSTUS	transcript	17127709	17128304	.	-	.	transcript_id "Ledus.S2G219300.t1"; gene_id "Ledus.S2G219300"
Ledus.S2	AUGUSTUS	stop_codon	17127706	17127708	.	-	0	transcript_id "Ledus.S2G219300.t1"; gene_id "Ledus.S2G219300"
Ledus.S2	AUGUSTUS	CDS	17127709	17127738	0.42	-	0	transcript_id "Ledus.S2G219300.t1"; gene_id "Ledus.S2G219300"
Ledus.S2	AUGUSTUS	exon	17127709	17127738	.	-	.	transcript_id "Ledus.S2G219300.t1"; gene_id "Ledus.S2G219300"
Ledus.S2	AUGUSTUS	intron	17127739	17128024	.	-	.	transcript_id "Ledus.S2G219300.t1"; gene_id "Ledus.S2G219300"
Ledus.S2	AUGUSTUS	CDS	17128025	17128168	0.41	-	0	transcript_id "Ledus.S2G219300.t1"; gene_id "Ledus.S2G219300"
Ledus.S2	AUGUSTUS	exon	17128025	17128168	.	-	.	transcript_id "Ledus.S2G219300.t1"; gene_id "Ledus.S2G219300"
Ledus.S2	AUGUSTUS	intron	17128169	17128253	.	-	.	transcript_id "Ledus.S2G219300.t1"; gene_id "Ledus.S2G219300"
Ledus.S2	AUGUSTUS	CDS	17128254	17128304	0.86	-	0	transcript_id "Ledus.S2G219300.t1"; gene_id "Ledus.S2G219300"
Ledus.S2	AUGUSTUS	exon	17128254	17128304	.	-	.	transcript_id "Ledus.S2G219300.t1"; gene_id "Ledus.S2G219300"
Ledus.S2	AUGUSTUS	start_codon	17128302	17128304	.	-	0	transcript_id "Ledus.S2G219300.t1"; gene_id "Ledus.S2G219300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12972.t1 is derived from g6782.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1399958	1400209	.	+	.	Ledus.S6G003400
Ledus.S6	AUGUSTUS	transcript	1399958	1400209	.	+	.	transcript_id "Ledus.S6G003400.t1"; gene_id "Ledus.S6G003400"
Ledus.S6	AUGUSTUS	start_codon	1399958	1399960	.	+	0	transcript_id "Ledus.S6G003400.t1"; gene_id "Ledus.S6G003400"
Ledus.S6	AUGUSTUS	CDS	1399958	1400209	0.68	+	0	transcript_id "Ledus.S6G003400.t1"; gene_id "Ledus.S6G003400"
Ledus.S6	AUGUSTUS	exon	1399958	1400209	.	+	.	transcript_id "Ledus.S6G003400.t1"; gene_id "Ledus.S6G003400"
Ledus.S6	AUGUSTUS	stop_codon	1400210	1400212	.	+	0	transcript_id "Ledus.S6G003400.t1"; gene_id "Ledus.S6G003400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8281.t1 is derived from g12952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10426431	10427515	.	-	.	Ledus.S5G105900
Ledus.S5	AUGUSTUS	transcript	10426431	10427515	.	-	.	transcript_id "Ledus.S5G105900.t1"; gene_id "Ledus.S5G105900"
Ledus.S5	AUGUSTUS	stop_codon	10426428	10426430	.	-	0	transcript_id "Ledus.S5G105900.t1"; gene_id "Ledus.S5G105900"
Ledus.S5	AUGUSTUS	CDS	10426431	10426733	0.99	-	0	transcript_id "Ledus.S5G105900.t1"; gene_id "Ledus.S5G105900"
Ledus.S5	AUGUSTUS	exon	10426431	10426733	.	-	.	transcript_id "Ledus.S5G105900.t1"; gene_id "Ledus.S5G105900"
Ledus.S5	AUGUSTUS	intron	10426734	10426819	.	-	.	transcript_id "Ledus.S5G105900.t1"; gene_id "Ledus.S5G105900"
Ledus.S5	AUGUSTUS	CDS	10426820	10427515	0.82	-	0	transcript_id "Ledus.S5G105900.t1"; gene_id "Ledus.S5G105900"
Ledus.S5	AUGUSTUS	exon	10426820	10427515	.	-	.	transcript_id "Ledus.S5G105900.t1"; gene_id "Ledus.S5G105900"
Ledus.S5	AUGUSTUS	start_codon	10427513	10427515	.	-	0	transcript_id "Ledus.S5G105900.t1"; gene_id "Ledus.S5G105900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5088.t1 is derived from g2527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21496828	21498415	.	-	.	Ledus.S1G250900
Ledus.S1	AUGUSTUS	transcript	21496828	21498415	.	-	.	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	stop_codon	21496825	21496827	.	-	0	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	CDS	21496828	21497313	0.33	-	0	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	exon	21496828	21497313	.	-	.	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	intron	21497314	21497442	.	-	.	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	CDS	21497443	21497493	0.99	-	0	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	exon	21497443	21497493	.	-	.	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	intron	21497494	21497590	.	-	.	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	CDS	21497591	21497686	1	-	0	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	exon	21497591	21497686	.	-	.	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	intron	21497687	21497762	.	-	.	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	CDS	21497763	21497840	0.67	-	0	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	exon	21497763	21497840	.	-	.	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	intron	21497841	21498145	.	-	.	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	CDS	21498146	21498277	0.71	-	0	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	exon	21498146	21498277	.	-	.	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	intron	21498278	21498358	.	-	.	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	CDS	21498359	21498415	1	-	0	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	exon	21498359	21498415	.	-	.	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
Ledus.S1	AUGUSTUS	start_codon	21498413	21498415	.	-	0	transcript_id "Ledus.S1G250900.t1"; gene_id "Ledus.S1G250900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12061.t1 is derived from g5680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9272164	9273714	.	-	.	Ledus.S4G121700
Ledus.S4	AUGUSTUS	transcript	9272164	9273714	.	-	.	transcript_id "Ledus.S4G121700.t1"; gene_id "Ledus.S4G121700"
Ledus.S4	AUGUSTUS	stop_codon	9272161	9272163	.	-	0	transcript_id "Ledus.S4G121700.t1"; gene_id "Ledus.S4G121700"
Ledus.S4	AUGUSTUS	CDS	9272164	9272208	0.44	-	0	transcript_id "Ledus.S4G121700.t1"; gene_id "Ledus.S4G121700"
Ledus.S4	AUGUSTUS	exon	9272164	9272208	.	-	.	transcript_id "Ledus.S4G121700.t1"; gene_id "Ledus.S4G121700"
Ledus.S4	AUGUSTUS	intron	9272209	9272290	.	-	.	transcript_id "Ledus.S4G121700.t1"; gene_id "Ledus.S4G121700"
Ledus.S4	AUGUSTUS	CDS	9272291	9272549	0.93	-	1	transcript_id "Ledus.S4G121700.t1"; gene_id "Ledus.S4G121700"
Ledus.S4	AUGUSTUS	exon	9272291	9272549	.	-	.	transcript_id "Ledus.S4G121700.t1"; gene_id "Ledus.S4G121700"
Ledus.S4	AUGUSTUS	intron	9272550	9273439	.	-	.	transcript_id "Ledus.S4G121700.t1"; gene_id "Ledus.S4G121700"
Ledus.S4	AUGUSTUS	CDS	9273440	9273714	0.78	-	0	transcript_id "Ledus.S4G121700.t1"; gene_id "Ledus.S4G121700"
Ledus.S4	AUGUSTUS	exon	9273440	9273714	.	-	.	transcript_id "Ledus.S4G121700.t1"; gene_id "Ledus.S4G121700"
Ledus.S4	AUGUSTUS	start_codon	9273712	9273714	.	-	0	transcript_id "Ledus.S4G121700.t1"; gene_id "Ledus.S4G121700"
# This transcript jg9509.t2 is derived from g10539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9509.t3 is derived from g10539.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9510.t1 is derived from g10540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7516516	7518302	.	+	.	Ledus.S3G098700
Ledus.S3	AUGUSTUS	transcript	7516516	7518302	.	+	.	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	start_codon	7516516	7516518	.	+	0	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	CDS	7516516	7516922	0.63	+	0	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	exon	7516516	7516922	.	+	.	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	intron	7516923	7517110	.	+	.	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	CDS	7517111	7517219	0.97	+	1	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	exon	7517111	7517219	.	+	.	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	intron	7517220	7517321	.	+	.	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	CDS	7517322	7517413	0.97	+	0	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	exon	7517322	7517413	.	+	.	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	intron	7517414	7517538	.	+	.	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	CDS	7517539	7517797	1	+	1	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	exon	7517539	7517797	.	+	.	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	intron	7517798	7517878	.	+	.	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	CDS	7517879	7518022	0.93	+	0	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	exon	7517879	7518022	.	+	.	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	intron	7518023	7518128	.	+	.	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	CDS	7518129	7518302	0.95	+	0	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	exon	7518129	7518302	.	+	.	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
Ledus.S3	AUGUSTUS	stop_codon	7518303	7518305	.	+	0	transcript_id "Ledus.S3G098700.t1"; gene_id "Ledus.S3G098700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2934.t1 is derived from g369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4653584	4656209	.	+	.	Ledus.S1G035500
Ledus.S1	AUGUSTUS	transcript	4653584	4656209	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	start_codon	4653584	4653586	.	+	0	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	CDS	4653584	4653754	0.99	+	0	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	exon	4653584	4653754	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	intron	4653755	4653876	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	CDS	4653877	4653941	1	+	0	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	exon	4653877	4653941	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	intron	4653942	4654025	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	CDS	4654026	4654124	1	+	1	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	exon	4654026	4654124	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	intron	4654125	4654261	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	CDS	4654262	4654394	1	+	1	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	exon	4654262	4654394	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	intron	4654395	4654479	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	CDS	4654480	4654542	1	+	0	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	exon	4654480	4654542	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	intron	4654543	4654659	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	CDS	4654660	4654719	1	+	0	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	exon	4654660	4654719	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	intron	4654720	4654859	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	CDS	4654860	4654982	1	+	0	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	exon	4654860	4654982	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	intron	4654983	4655061	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	CDS	4655062	4655133	1	+	0	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	exon	4655062	4655133	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	intron	4655134	4655337	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	CDS	4655338	4655475	1	+	0	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	exon	4655338	4655475	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	intron	4655476	4655573	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	CDS	4655574	4655738	1	+	0	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	exon	4655574	4655738	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	intron	4655739	4655819	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	CDS	4655820	4655975	1	+	0	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	exon	4655820	4655975	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	intron	4655976	4656071	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	CDS	4656072	4656209	1	+	0	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	exon	4656072	4656209	.	+	.	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
Ledus.S1	AUGUSTUS	stop_codon	4656210	4656212	.	+	0	transcript_id "Ledus.S1G035500.t1"; gene_id "Ledus.S1G035500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11391.t1 is derived from g5009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3965136	3966472	.	-	.	Ledus.S4G054700
Ledus.S4	AUGUSTUS	transcript	3965136	3966472	.	-	.	transcript_id "Ledus.S4G054700.t1"; gene_id "Ledus.S4G054700"
Ledus.S4	AUGUSTUS	stop_codon	3965133	3965135	.	-	0	transcript_id "Ledus.S4G054700.t1"; gene_id "Ledus.S4G054700"
Ledus.S4	AUGUSTUS	CDS	3965136	3965581	0.94	-	2	transcript_id "Ledus.S4G054700.t1"; gene_id "Ledus.S4G054700"
Ledus.S4	AUGUSTUS	exon	3965136	3965581	.	-	.	transcript_id "Ledus.S4G054700.t1"; gene_id "Ledus.S4G054700"
Ledus.S4	AUGUSTUS	intron	3965582	3966324	.	-	.	transcript_id "Ledus.S4G054700.t1"; gene_id "Ledus.S4G054700"
Ledus.S4	AUGUSTUS	CDS	3966325	3966472	0.87	-	0	transcript_id "Ledus.S4G054700.t1"; gene_id "Ledus.S4G054700"
Ledus.S4	AUGUSTUS	exon	3966325	3966472	.	-	.	transcript_id "Ledus.S4G054700.t1"; gene_id "Ledus.S4G054700"
Ledus.S4	AUGUSTUS	start_codon	3966470	3966472	.	-	0	transcript_id "Ledus.S4G054700.t1"; gene_id "Ledus.S4G054700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg729.t1 is derived from g7590.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4560235	4564659	.	-	.	Ledus.S2G061100
Ledus.S2	AUGUSTUS	transcript	4560235	4564659	.	-	.	transcript_id "Ledus.S2G061100.t1"; gene_id "Ledus.S2G061100"
Ledus.S2	AUGUSTUS	stop_codon	4560232	4560234	.	-	0	transcript_id "Ledus.S2G061100.t1"; gene_id "Ledus.S2G061100"
Ledus.S2	AUGUSTUS	CDS	4560235	4560387	1	-	0	transcript_id "Ledus.S2G061100.t1"; gene_id "Ledus.S2G061100"
Ledus.S2	AUGUSTUS	exon	4560235	4560387	.	-	.	transcript_id "Ledus.S2G061100.t1"; gene_id "Ledus.S2G061100"
Ledus.S2	AUGUSTUS	intron	4560388	4560628	.	-	.	transcript_id "Ledus.S2G061100.t1"; gene_id "Ledus.S2G061100"
Ledus.S2	AUGUSTUS	CDS	4560629	4560815	1	-	1	transcript_id "Ledus.S2G061100.t1"; gene_id "Ledus.S2G061100"
Ledus.S2	AUGUSTUS	exon	4560629	4560815	.	-	.	transcript_id "Ledus.S2G061100.t1"; gene_id "Ledus.S2G061100"
Ledus.S2	AUGUSTUS	intron	4560816	4564648	.	-	.	transcript_id "Ledus.S2G061100.t1"; gene_id "Ledus.S2G061100"
Ledus.S2	AUGUSTUS	CDS	4564649	4564659	0.01	-	0	transcript_id "Ledus.S2G061100.t1"; gene_id "Ledus.S2G061100"
Ledus.S2	AUGUSTUS	exon	4564649	4564659	.	-	.	transcript_id "Ledus.S2G061100.t1"; gene_id "Ledus.S2G061100"
Ledus.S2	AUGUSTUS	start_codon	4564657	4564659	.	-	0	transcript_id "Ledus.S2G061100.t1"; gene_id "Ledus.S2G061100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8544.t1 is derived from g9574.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	108715	109820	.	-	.	Ledus.S3G002100
Ledus.S3	AUGUSTUS	transcript	108715	109820	.	-	.	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	stop_codon	108712	108714	.	-	0	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	CDS	108715	108918	1	-	0	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	exon	108715	108918	.	-	.	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	intron	108919	109029	.	-	.	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	CDS	109030	109181	1	-	2	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	exon	109030	109181	.	-	.	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	intron	109182	109311	.	-	.	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	CDS	109312	109527	1	-	2	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	exon	109312	109527	.	-	.	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	intron	109528	109600	.	-	.	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	CDS	109601	109820	1	-	0	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	exon	109601	109820	.	-	.	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	start_codon	109818	109820	.	-	0	transcript_id "Ledus.S3G002100.t1"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	transcript	108715	109820	.	-	.	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	stop_codon	108712	108714	.	-	0	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	CDS	108715	108918	1	-	0	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	exon	108715	108918	.	-	.	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	intron	108919	109029	.	-	.	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	CDS	109030	109181	1	-	2	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	exon	109030	109181	.	-	.	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	intron	109182	109311	.	-	.	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	CDS	109312	109524	1	-	2	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	exon	109312	109524	.	-	.	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	intron	109525	109600	.	-	.	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	CDS	109601	109820	0.99	-	0	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	exon	109601	109820	.	-	.	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
Ledus.S3	AUGUSTUS	start_codon	109818	109820	.	-	0	transcript_id "Ledus.S3G002100.t2"; gene_id "Ledus.S3G002100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6682.t1 is derived from g4125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33199980	33200738	.	+	.	Ledus.S1G410300
Ledus.S1	AUGUSTUS	transcript	33199980	33200738	.	+	.	transcript_id "Ledus.S1G410300.t1"; gene_id "Ledus.S1G410300"
Ledus.S1	AUGUSTUS	start_codon	33199980	33199982	.	+	0	transcript_id "Ledus.S1G410300.t1"; gene_id "Ledus.S1G410300"
Ledus.S1	AUGUSTUS	CDS	33199980	33200738	0.31	+	0	transcript_id "Ledus.S1G410300.t1"; gene_id "Ledus.S1G410300"
Ledus.S1	AUGUSTUS	exon	33199980	33200738	.	+	.	transcript_id "Ledus.S1G410300.t1"; gene_id "Ledus.S1G410300"
Ledus.S1	AUGUSTUS	stop_codon	33200739	33200741	.	+	0	transcript_id "Ledus.S1G410300.t1"; gene_id "Ledus.S1G410300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3982.t1 is derived from g1418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13907312	13911025	.	-	.	Ledus.S1G140300
Ledus.S1	AUGUSTUS	transcript	13907312	13911025	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	stop_codon	13907309	13907311	.	-	0	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13907312	13907425	1	-	0	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13907312	13907425	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13907426	13907538	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13907539	13907630	1	-	2	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13907539	13907630	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13907631	13907743	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13907744	13907840	1	-	0	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13907744	13907840	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13907841	13908020	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13908021	13908158	0.52	-	0	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13908021	13908158	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13908159	13908379	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13908380	13908473	0.97	-	1	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13908380	13908473	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13908474	13908601	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13908602	13908757	1	-	1	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13908602	13908757	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13908758	13908864	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13908865	13909076	0.99	-	0	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13908865	13909076	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13909077	13909268	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13909269	13909385	1	-	0	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13909269	13909385	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13909386	13909565	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13909566	13909634	1	-	0	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13909566	13909634	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13909635	13909747	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13909748	13909786	0.99	-	0	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13909748	13909786	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13909787	13909893	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13909894	13910065	1	-	1	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13909894	13910065	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13910066	13910207	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13910208	13910446	0.9	-	0	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13910208	13910446	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13910447	13910551	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13910552	13910722	1	-	0	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13910552	13910722	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	intron	13910723	13910938	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	CDS	13910939	13911025	0.78	-	0	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	exon	13910939	13911025	.	-	.	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
Ledus.S1	AUGUSTUS	start_codon	13911023	13911025	.	-	0	transcript_id "Ledus.S1G140300.t1"; gene_id "Ledus.S1G140300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8966.t1 is derived from g9996.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3568629	3572037	.	-	.	Ledus.S3G044300
Ledus.S3	AUGUSTUS	transcript	3568629	3572037	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	stop_codon	3568626	3568628	.	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3568629	3568757	0.96	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3568629	3568757	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3568758	3568881	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3568882	3569087	1	-	2	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3568882	3569087	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3569088	3569177	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3569178	3569215	1	-	1	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3569178	3569215	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3569216	3569316	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3569317	3569393	1	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3569317	3569393	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3569394	3569493	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3569494	3569637	1	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3569494	3569637	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3569638	3569723	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3569724	3569819	1	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3569724	3569819	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3569820	3570112	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3570113	3570316	0.99	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3570113	3570316	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3570317	3570419	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3570420	3570485	1	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3570420	3570485	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3570486	3570581	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3570582	3570713	1	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3570582	3570713	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3570714	3570793	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3570794	3570911	1	-	1	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3570794	3570911	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3570912	3570994	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3570995	3571095	1	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3570995	3571095	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3571096	3571243	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3571244	3571372	1	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3571244	3571372	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3571373	3571463	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3571464	3571553	1	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3571464	3571553	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3571554	3571647	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3571648	3571806	1	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3571648	3571806	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	intron	3571807	3571881	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	CDS	3571882	3572037	1	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	exon	3571882	3572037	.	-	.	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
Ledus.S3	AUGUSTUS	start_codon	3572035	3572037	.	-	0	transcript_id "Ledus.S3G044300.t1"; gene_id "Ledus.S3G044300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10030.t1 is derived from g11060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12084009	12084911	.	-	.	Ledus.S3G150700
Ledus.S3	AUGUSTUS	transcript	12084009	12084911	.	-	.	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	stop_codon	12084006	12084008	.	-	0	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	CDS	12084009	12084015	1	-	1	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	exon	12084009	12084015	.	-	.	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	intron	12084016	12084157	.	-	.	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	CDS	12084158	12084165	0.78	-	0	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	exon	12084158	12084165	.	-	.	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	intron	12084166	12084228	.	-	.	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	CDS	12084229	12084328	0.58	-	1	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	exon	12084229	12084328	.	-	.	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	intron	12084329	12084417	.	-	.	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	CDS	12084418	12084529	1	-	2	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	exon	12084418	12084529	.	-	.	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	intron	12084530	12084633	.	-	.	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	CDS	12084634	12084710	0.99	-	1	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	exon	12084634	12084710	.	-	.	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	intron	12084711	12084798	.	-	.	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	CDS	12084799	12084911	0.6	-	0	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	exon	12084799	12084911	.	-	.	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
Ledus.S3	AUGUSTUS	start_codon	12084909	12084911	.	-	0	transcript_id "Ledus.S3G150700.t1"; gene_id "Ledus.S3G150700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1145.t1 is derived from g8006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7913769	7916627	.	-	.	Ledus.S2G102700
Ledus.S2	AUGUSTUS	transcript	7913769	7916627	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	stop_codon	7913766	7913768	.	-	0	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	CDS	7913769	7914231	0.98	-	1	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	exon	7913769	7914231	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	intron	7914232	7914364	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	CDS	7914365	7914421	1	-	1	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	exon	7914365	7914421	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	intron	7914422	7914501	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	CDS	7914502	7914579	1	-	1	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	exon	7914502	7914579	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	intron	7914580	7914671	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	CDS	7914672	7914759	1	-	2	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	exon	7914672	7914759	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	intron	7914760	7914861	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	CDS	7914862	7914945	1	-	2	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	exon	7914862	7914945	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	intron	7914946	7915103	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	CDS	7915104	7915159	1	-	1	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	exon	7915104	7915159	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	intron	7915160	7915281	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	CDS	7915282	7915355	1	-	0	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	exon	7915282	7915355	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	intron	7915356	7915464	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	CDS	7915465	7915582	0.82	-	1	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	exon	7915465	7915582	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	intron	7915583	7915700	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	CDS	7915701	7915771	1	-	0	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	exon	7915701	7915771	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	intron	7915772	7915914	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	CDS	7915915	7915981	1	-	1	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	exon	7915915	7915981	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	intron	7915982	7916166	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	CDS	7916167	7916627	0.68	-	0	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	exon	7916167	7916627	.	-	.	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
Ledus.S2	AUGUSTUS	start_codon	7916625	7916627	.	-	0	transcript_id "Ledus.S2G102700.t1"; gene_id "Ledus.S2G102700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1810.t1 is derived from g8673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12712242	12713202	.	-	.	Ledus.S2G169200
Ledus.S2	AUGUSTUS	transcript	12712242	12713202	.	-	.	transcript_id "Ledus.S2G169200.t1"; gene_id "Ledus.S2G169200"
Ledus.S2	AUGUSTUS	stop_codon	12712239	12712241	.	-	0	transcript_id "Ledus.S2G169200.t1"; gene_id "Ledus.S2G169200"
Ledus.S2	AUGUSTUS	CDS	12712242	12712770	1	-	1	transcript_id "Ledus.S2G169200.t1"; gene_id "Ledus.S2G169200"
Ledus.S2	AUGUSTUS	exon	12712242	12712770	.	-	.	transcript_id "Ledus.S2G169200.t1"; gene_id "Ledus.S2G169200"
Ledus.S2	AUGUSTUS	intron	12712771	12712852	.	-	.	transcript_id "Ledus.S2G169200.t1"; gene_id "Ledus.S2G169200"
Ledus.S2	AUGUSTUS	CDS	12712853	12712953	1	-	0	transcript_id "Ledus.S2G169200.t1"; gene_id "Ledus.S2G169200"
Ledus.S2	AUGUSTUS	exon	12712853	12712953	.	-	.	transcript_id "Ledus.S2G169200.t1"; gene_id "Ledus.S2G169200"
Ledus.S2	AUGUSTUS	intron	12712954	12713052	.	-	.	transcript_id "Ledus.S2G169200.t1"; gene_id "Ledus.S2G169200"
Ledus.S2	AUGUSTUS	CDS	12713053	12713202	0.75	-	0	transcript_id "Ledus.S2G169200.t1"; gene_id "Ledus.S2G169200"
Ledus.S2	AUGUSTUS	exon	12713053	12713202	.	-	.	transcript_id "Ledus.S2G169200.t1"; gene_id "Ledus.S2G169200"
Ledus.S2	AUGUSTUS	start_codon	12713200	12713202	.	-	0	transcript_id "Ledus.S2G169200.t1"; gene_id "Ledus.S2G169200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg11058.t1 is derived from g4676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1517709	1522619	.	-	.	Ledus.S4G021400
Ledus.S4	AUGUSTUS	transcript	1517709	1522619	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	stop_codon	1517706	1517708	.	-	0	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1517709	1517801	1	-	0	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1517709	1517801	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1517802	1518008	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518009	1518033	0.83	-	1	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518009	1518033	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518034	1518110	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518111	1518121	1	-	0	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518111	1518121	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518122	1518303	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518304	1518361	0.95	-	1	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518304	1518361	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518362	1518432	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518433	1518650	0.94	-	0	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518433	1518650	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518651	1518733	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518734	1518848	0.98	-	1	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518734	1518848	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518849	1518950	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518951	1519116	0.99	-	2	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518951	1519116	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519117	1519208	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519209	1519259	1	-	2	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519209	1519259	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519260	1519419	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519420	1519498	1	-	0	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519420	1519498	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519499	1519653	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519654	1519722	1	-	0	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519654	1519722	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519723	1519866	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519867	1519965	1	-	0	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519867	1519965	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519966	1520064	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520065	1520136	1	-	0	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520065	1520136	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1520137	1520299	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520300	1520374	1	-	0	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520300	1520374	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1520375	1520546	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520547	1520779	1	-	2	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520547	1520779	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1520780	1520963	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520964	1521134	0.98	-	2	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520964	1521134	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1521135	1521251	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1521252	1522362	0.52	-	0	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1521252	1522362	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1522363	1522487	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1522488	1522619	1	-	0	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1522488	1522619	.	-	.	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	start_codon	1522617	1522619	.	-	0	transcript_id "Ledus.S4G021400.t1"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	transcript	1517709	1522619	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	stop_codon	1517706	1517708	.	-	0	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1517709	1517801	1	-	0	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1517709	1517801	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1517802	1518008	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518009	1518033	0.78	-	1	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518009	1518033	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518034	1518110	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518111	1518121	1	-	0	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518111	1518121	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518122	1518303	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518304	1518361	0.94	-	1	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518304	1518361	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518362	1518432	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518433	1518650	0.88	-	0	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518433	1518650	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518651	1518733	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518734	1518848	0.94	-	1	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518734	1518848	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518849	1518950	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518951	1519116	0.94	-	2	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518951	1519116	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519117	1519208	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519209	1519259	1	-	2	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519209	1519259	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519260	1519419	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519420	1519498	1	-	0	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519420	1519498	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519499	1519653	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519654	1519722	1	-	0	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519654	1519722	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519723	1519866	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519867	1519965	1	-	0	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519867	1519965	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519966	1520064	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520065	1520136	1	-	0	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520065	1520136	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1520137	1520278	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520279	1520374	0.99	-	0	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520279	1520374	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1520375	1520546	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520547	1520779	1	-	2	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520547	1520779	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1520780	1520963	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520964	1521134	0.99	-	2	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520964	1521134	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1521135	1521251	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1521252	1522362	0.51	-	0	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1521252	1522362	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1522363	1522487	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1522488	1522619	1	-	0	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1522488	1522619	.	-	.	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	start_codon	1522617	1522619	.	-	0	transcript_id "Ledus.S4G021400.t2"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	transcript	1517709	1522619	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	stop_codon	1517706	1517708	.	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1517709	1517801	1	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1517709	1517801	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1517802	1518008	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518009	1518033	0.79	-	1	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518009	1518033	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518034	1518110	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518111	1518121	1	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518111	1518121	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518122	1518303	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518304	1518361	0.97	-	1	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518304	1518361	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518362	1518432	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518433	1518650	0.92	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518433	1518650	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518651	1518733	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518734	1518848	0.95	-	1	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518734	1518848	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518849	1518950	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518951	1519116	0.96	-	2	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518951	1519116	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519117	1519208	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519209	1519259	1	-	2	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519209	1519259	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519260	1519419	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519420	1519498	1	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519420	1519498	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519499	1519653	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519654	1519722	1	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519654	1519722	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519723	1519866	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519867	1519965	1	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519867	1519965	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519966	1520064	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520065	1520136	1	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520065	1520136	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1520137	1520299	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520300	1520374	1	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520300	1520374	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1520375	1520546	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520547	1520762	0.97	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520547	1520762	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1520763	1520963	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520964	1521075	0.87	-	1	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520964	1521075	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1521076	1521251	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1521252	1521283	0.78	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1521252	1521283	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1521284	1521402	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1521403	1522362	0.75	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1521403	1522362	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1522363	1522487	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1522488	1522619	1	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1522488	1522619	.	-	.	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	start_codon	1522617	1522619	.	-	0	transcript_id "Ledus.S4G021400.t3"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	transcript	1517709	1522619	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	stop_codon	1517706	1517708	.	-	0	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1517709	1517801	0.97	-	0	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1517709	1517801	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1517802	1518008	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518009	1518033	0.71	-	1	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518009	1518033	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518034	1518110	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518111	1518121	1	-	0	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518111	1518121	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518122	1518303	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518304	1518361	0.95	-	1	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518304	1518361	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518362	1518432	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518433	1518669	0.76	-	1	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518433	1518669	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518670	1518733	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518734	1518848	0.78	-	2	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518734	1518848	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1518849	1518972	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1518973	1519116	0.64	-	2	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1518973	1519116	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519117	1519208	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519209	1519259	1	-	2	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519209	1519259	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519260	1519419	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519420	1519498	1	-	0	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519420	1519498	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519499	1519653	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519654	1519722	1	-	0	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519654	1519722	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519723	1519866	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1519867	1519965	1	-	0	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1519867	1519965	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1519966	1520064	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520065	1520136	1	-	0	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520065	1520136	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1520137	1520299	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520300	1520374	1	-	0	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520300	1520374	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1520375	1520546	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520547	1520779	1	-	2	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520547	1520779	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1520780	1520963	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1520964	1521134	0.97	-	2	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1520964	1521134	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1521135	1521251	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1521252	1522362	0.67	-	0	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1521252	1522362	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	intron	1522363	1522487	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	CDS	1522488	1522619	0.98	-	0	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	exon	1522488	1522619	.	-	.	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
Ledus.S4	AUGUSTUS	start_codon	1522617	1522619	.	-	0	transcript_id "Ledus.S4G021400.t4"; gene_id "Ledus.S4G021400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7862.t1 is derived from g12533.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7515899	7517057	.	-	.	Ledus.S5G064000
Ledus.S5	AUGUSTUS	transcript	7515899	7517057	.	-	.	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	stop_codon	7515896	7515898	.	-	0	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	CDS	7515899	7515987	0.97	-	2	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	exon	7515899	7515987	.	-	.	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	intron	7515988	7516072	.	-	.	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	CDS	7516073	7516154	1	-	0	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	exon	7516073	7516154	.	-	.	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	intron	7516155	7516306	.	-	.	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	CDS	7516307	7516391	1	-	1	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	exon	7516307	7516391	.	-	.	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	intron	7516392	7516488	.	-	.	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	CDS	7516489	7516577	1	-	0	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	exon	7516489	7516577	.	-	.	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	intron	7516578	7516742	.	-	.	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	CDS	7516743	7516817	1	-	0	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	exon	7516743	7516817	.	-	.	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	intron	7516818	7516901	.	-	.	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	CDS	7516902	7517057	1	-	0	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	exon	7516902	7517057	.	-	.	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
Ledus.S5	AUGUSTUS	start_codon	7517055	7517057	.	-	0	transcript_id "Ledus.S5G064000.t1"; gene_id "Ledus.S5G064000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5162.t1 is derived from g2601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22041259	22042791	.	-	.	Ledus.S1G258300
Ledus.S1	AUGUSTUS	transcript	22041259	22042791	.	-	.	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	stop_codon	22041256	22041258	.	-	0	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	CDS	22041259	22041261	0.93	-	0	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	exon	22041259	22041261	.	-	.	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	intron	22041262	22041440	.	-	.	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	CDS	22041441	22041488	0.93	-	0	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	exon	22041441	22041488	.	-	.	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	intron	22041489	22041668	.	-	.	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	CDS	22041669	22041728	1	-	0	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	exon	22041669	22041728	.	-	.	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	intron	22041729	22041897	.	-	.	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	CDS	22041898	22041994	1	-	1	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	exon	22041898	22041994	.	-	.	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	intron	22041995	22042306	.	-	.	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	CDS	22042307	22042791	0.93	-	0	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	exon	22042307	22042791	.	-	.	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
Ledus.S1	AUGUSTUS	start_codon	22042789	22042791	.	-	0	transcript_id "Ledus.S1G258300.t1"; gene_id "Ledus.S1G258300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6907.t1 is derived from g4351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35120266	35122223	.	+	.	Ledus.S1G432800
Ledus.S1	AUGUSTUS	transcript	35120266	35122223	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	start_codon	35120266	35120268	.	+	0	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35120266	35120388	0.74	+	0	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35120266	35120388	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35120389	35120477	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35120478	35120588	0.89	+	0	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35120478	35120588	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35120589	35120677	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35120678	35120818	0.87	+	0	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35120678	35120818	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35120819	35120894	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35120895	35121005	1	+	0	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35120895	35121005	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35121006	35121083	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35121084	35121230	0.99	+	0	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35121084	35121230	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35121231	35121332	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35121333	35121373	0.99	+	0	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35121333	35121373	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35121374	35121493	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35121494	35121558	0.58	+	1	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35121494	35121558	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35121559	35121888	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35121889	35122223	0.97	+	2	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35121889	35122223	.	+	.	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	stop_codon	35122224	35122226	.	+	0	transcript_id "Ledus.S1G432800.t1"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	transcript	35120266	35121575	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	start_codon	35120266	35120268	.	+	0	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35120266	35120388	0.65	+	0	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35120266	35120388	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35120389	35120477	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35120478	35120588	0.91	+	0	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35120478	35120588	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35120589	35120677	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35120678	35120818	0.85	+	0	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35120678	35120818	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35120819	35120894	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35120895	35121005	1	+	0	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35120895	35121005	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35121006	35121083	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35121084	35121230	0.98	+	0	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35121084	35121230	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35121231	35121332	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35121333	35121373	0.98	+	0	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35121333	35121373	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	intron	35121374	35121493	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	CDS	35121494	35121575	0.47	+	1	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	exon	35121494	35121575	.	+	.	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
Ledus.S1	AUGUSTUS	stop_codon	35121576	35121578	.	+	0	transcript_id "Ledus.S1G432800.t2"; gene_id "Ledus.S1G432800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5622.t1 is derived from g3061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25419308	25420179	.	-	.	Ledus.S1G304300
Ledus.S1	AUGUSTUS	transcript	25419308	25420179	.	-	.	transcript_id "Ledus.S1G304300.t1"; gene_id "Ledus.S1G304300"
Ledus.S1	AUGUSTUS	stop_codon	25419305	25419307	.	-	0	transcript_id "Ledus.S1G304300.t1"; gene_id "Ledus.S1G304300"
Ledus.S1	AUGUSTUS	CDS	25419308	25419344	0.91	-	1	transcript_id "Ledus.S1G304300.t1"; gene_id "Ledus.S1G304300"
Ledus.S1	AUGUSTUS	exon	25419308	25419344	.	-	.	transcript_id "Ledus.S1G304300.t1"; gene_id "Ledus.S1G304300"
Ledus.S1	AUGUSTUS	intron	25419345	25419516	.	-	.	transcript_id "Ledus.S1G304300.t1"; gene_id "Ledus.S1G304300"
Ledus.S1	AUGUSTUS	CDS	25419517	25419754	0.95	-	2	transcript_id "Ledus.S1G304300.t1"; gene_id "Ledus.S1G304300"
Ledus.S1	AUGUSTUS	exon	25419517	25419754	.	-	.	transcript_id "Ledus.S1G304300.t1"; gene_id "Ledus.S1G304300"
Ledus.S1	AUGUSTUS	intron	25419755	25419905	.	-	.	transcript_id "Ledus.S1G304300.t1"; gene_id "Ledus.S1G304300"
Ledus.S1	AUGUSTUS	CDS	25419906	25420179	0.65	-	0	transcript_id "Ledus.S1G304300.t1"; gene_id "Ledus.S1G304300"
Ledus.S1	AUGUSTUS	exon	25419906	25420179	.	-	.	transcript_id "Ledus.S1G304300.t1"; gene_id "Ledus.S1G304300"
Ledus.S1	AUGUSTUS	start_codon	25420177	25420179	.	-	0	transcript_id "Ledus.S1G304300.t1"; gene_id "Ledus.S1G304300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg828.t1 is derived from g7689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5348108	5351437	.	+	.	Ledus.S2G071000
Ledus.S2	AUGUSTUS	transcript	5348108	5351437	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	start_codon	5348108	5348110	.	+	0	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	CDS	5348108	5348142	0.94	+	0	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	exon	5348108	5348142	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	intron	5348143	5348358	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	CDS	5348359	5348463	0.79	+	1	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	exon	5348359	5348463	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	intron	5348464	5348551	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	CDS	5348552	5348614	0.49	+	1	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	exon	5348552	5348614	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	intron	5348615	5349743	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	CDS	5349744	5349774	0.71	+	1	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	exon	5349744	5349774	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	intron	5349775	5350007	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	CDS	5350008	5350367	0.99	+	0	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	exon	5350008	5350367	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	intron	5350368	5350467	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	CDS	5350468	5350545	1	+	0	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	exon	5350468	5350545	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	intron	5350546	5350627	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	CDS	5350628	5350768	1	+	0	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	exon	5350628	5350768	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	intron	5350769	5350849	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	CDS	5350850	5350926	1	+	0	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	exon	5350850	5350926	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	intron	5350927	5351016	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	CDS	5351017	5351065	1	+	1	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	exon	5351017	5351065	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	intron	5351066	5351149	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	CDS	5351150	5351181	1	+	0	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	exon	5351150	5351181	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	intron	5351182	5351265	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	CDS	5351266	5351437	1	+	1	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	exon	5351266	5351437	.	+	.	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
Ledus.S2	AUGUSTUS	stop_codon	5351438	5351440	.	+	0	transcript_id "Ledus.S2G071000.t1"; gene_id "Ledus.S2G071000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg850.t1 is derived from g7711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5668293	5672636	.	-	.	Ledus.S2G073200
Ledus.S2	AUGUSTUS	transcript	5668293	5672636	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	stop_codon	5668290	5668292	.	-	0	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5668293	5668362	1	-	1	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5668293	5668362	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5668363	5668453	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5668454	5668575	1	-	0	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5668454	5668575	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5668576	5668698	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5668699	5668794	1	-	0	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5668699	5668794	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5668795	5668881	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5668882	5668998	1	-	0	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5668882	5668998	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5668999	5669085	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5669086	5669157	1	-	0	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5669086	5669157	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5669158	5669245	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5669246	5669409	1	-	2	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5669246	5669409	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5669410	5669503	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5669504	5669604	1	-	1	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5669504	5669604	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5669605	5669746	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5669747	5669843	1	-	2	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5669747	5669843	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5669844	5669941	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5669942	5670077	0.99	-	0	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5669942	5670077	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5670078	5670207	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5670208	5670344	0.99	-	2	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5670208	5670344	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5670345	5670509	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5670510	5670698	1	-	2	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5670510	5670698	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5670699	5671096	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5671097	5671205	0.63	-	0	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5671097	5671205	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5671206	5671370	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5671371	5671491	0.77	-	1	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5671371	5671491	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5671492	5671673	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5671674	5671968	0.88	-	2	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5671674	5671968	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	intron	5671969	5672311	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	CDS	5672312	5672636	0.65	-	0	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	exon	5672312	5672636	.	-	.	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
Ledus.S2	AUGUSTUS	start_codon	5672634	5672636	.	-	0	transcript_id "Ledus.S2G073200.t1"; gene_id "Ledus.S2G073200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8493.t1 is derived from g13165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12192812	12194053	.	+	.	Ledus.S5G127100
Ledus.S5	AUGUSTUS	transcript	12192812	12194053	.	+	.	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	start_codon	12192812	12192814	.	+	0	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	CDS	12192812	12193120	0.91	+	0	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	exon	12192812	12193120	.	+	.	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	intron	12193121	12193254	.	+	.	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	CDS	12193255	12193338	1	+	0	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	exon	12193255	12193338	.	+	.	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	intron	12193339	12193432	.	+	.	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	CDS	12193433	12193482	1	+	0	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	exon	12193433	12193482	.	+	.	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	intron	12193483	12193621	.	+	.	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	CDS	12193622	12193670	1	+	1	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	exon	12193622	12193670	.	+	.	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	intron	12193671	12193768	.	+	.	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	CDS	12193769	12193843	1	+	0	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	exon	12193769	12193843	.	+	.	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	intron	12193844	12193933	.	+	.	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	CDS	12193934	12194053	1	+	0	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	exon	12193934	12194053	.	+	.	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
Ledus.S5	AUGUSTUS	stop_codon	12194054	12194056	.	+	0	transcript_id "Ledus.S5G127100.t1"; gene_id "Ledus.S5G127100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9896.t1 is derived from g10926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11008989	11014816	.	-	.	Ledus.S3G137300
Ledus.S3	AUGUSTUS	transcript	11008989	11014816	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	stop_codon	11008986	11008988	.	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11008989	11009042	0.99	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11008989	11009042	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11009043	11009117	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11009118	11009199	1	-	1	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11009118	11009199	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11009200	11009281	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11009282	11009517	0.98	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11009282	11009517	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11009518	11009631	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11009632	11009691	0.99	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11009632	11009691	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11009692	11009981	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11009982	11010155	1	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11009982	11010155	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11010156	11010274	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11010275	11010428	1	-	1	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11010275	11010428	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11010429	11010586	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11010587	11010674	1	-	2	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11010587	11010674	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11010675	11010856	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11010857	11010935	1	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11010857	11010935	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11010936	11011134	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11011135	11011216	0.84	-	1	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11011135	11011216	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11011217	11011319	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11011320	11011435	0.83	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11011320	11011435	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11011436	11011528	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11011529	11011597	0.98	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11011529	11011597	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11011598	11011719	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11011720	11011787	0.97	-	2	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11011720	11011787	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11011788	11011949	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11011950	11012042	0.87	-	2	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11011950	11012042	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11012043	11012168	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11012169	11012213	0.85	-	2	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11012169	11012213	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11012214	11012312	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11012313	11012388	0.92	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11012313	11012388	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11012389	11012575	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11012576	11012683	1	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11012576	11012683	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11012684	11012835	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11012836	11012907	1	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11012836	11012907	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11012908	11012998	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11012999	11013097	1	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11012999	11013097	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11013098	11013307	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11013308	11013394	1	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11013308	11013394	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11013395	11013472	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11013473	11013676	0.99	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11013473	11013676	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11013677	11013837	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11013838	11013978	1	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11013838	11013978	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11013979	11014060	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11014061	11014125	1	-	2	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11014061	11014125	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11014126	11014364	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11014365	11014544	1	-	2	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11014365	11014544	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	intron	11014545	11014755	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	CDS	11014756	11014816	0.71	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	exon	11014756	11014816	.	-	.	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
Ledus.S3	AUGUSTUS	start_codon	11014814	11014816	.	-	0	transcript_id "Ledus.S3G137300.t1"; gene_id "Ledus.S3G137300"
# This transcript jg6873.t2 is derived from g4317.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6874.t1 is derived from g4318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34906040	34906611	.	+	.	Ledus.S1G429500
Ledus.S1	AUGUSTUS	transcript	34906040	34906611	.	+	.	transcript_id "Ledus.S1G429500.t1"; gene_id "Ledus.S1G429500"
Ledus.S1	AUGUSTUS	start_codon	34906040	34906042	.	+	0	transcript_id "Ledus.S1G429500.t1"; gene_id "Ledus.S1G429500"
Ledus.S1	AUGUSTUS	CDS	34906040	34906240	0.31	+	0	transcript_id "Ledus.S1G429500.t1"; gene_id "Ledus.S1G429500"
Ledus.S1	AUGUSTUS	exon	34906040	34906240	.	+	.	transcript_id "Ledus.S1G429500.t1"; gene_id "Ledus.S1G429500"
Ledus.S1	AUGUSTUS	intron	34906241	34906587	.	+	.	transcript_id "Ledus.S1G429500.t1"; gene_id "Ledus.S1G429500"
Ledus.S1	AUGUSTUS	CDS	34906588	34906611	1	+	0	transcript_id "Ledus.S1G429500.t1"; gene_id "Ledus.S1G429500"
Ledus.S1	AUGUSTUS	exon	34906588	34906611	.	+	.	transcript_id "Ledus.S1G429500.t1"; gene_id "Ledus.S1G429500"
Ledus.S1	AUGUSTUS	stop_codon	34906612	34906614	.	+	0	transcript_id "Ledus.S1G429500.t1"; gene_id "Ledus.S1G429500"
# This transcript jg2680.t2 is derived from g113.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2680.t3 is derived from g113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2681.t1 is derived from g114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1700901	1703321	.	-	.	Ledus.S1G010200
Ledus.S1	AUGUSTUS	transcript	1700901	1703321	.	-	.	transcript_id "Ledus.S1G010200.t1"; gene_id "Ledus.S1G010200"
Ledus.S1	AUGUSTUS	stop_codon	1700898	1700900	.	-	0	transcript_id "Ledus.S1G010200.t1"; gene_id "Ledus.S1G010200"
Ledus.S1	AUGUSTUS	CDS	1700901	1703321	1	-	0	transcript_id "Ledus.S1G010200.t1"; gene_id "Ledus.S1G010200"
Ledus.S1	AUGUSTUS	exon	1700901	1703321	.	-	.	transcript_id "Ledus.S1G010200.t1"; gene_id "Ledus.S1G010200"
Ledus.S1	AUGUSTUS	start_codon	1703319	1703321	.	-	0	transcript_id "Ledus.S1G010200.t1"; gene_id "Ledus.S1G010200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3840.t1 is derived from g1276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12974342	12974563	.	-	.	Ledus.S1G126100
Ledus.S1	AUGUSTUS	transcript	12974342	12974563	.	-	.	transcript_id "Ledus.S1G126100.t1"; gene_id "Ledus.S1G126100"
Ledus.S1	AUGUSTUS	stop_codon	12974339	12974341	.	-	0	transcript_id "Ledus.S1G126100.t1"; gene_id "Ledus.S1G126100"
Ledus.S1	AUGUSTUS	CDS	12974342	12974563	0.66	-	0	transcript_id "Ledus.S1G126100.t1"; gene_id "Ledus.S1G126100"
Ledus.S1	AUGUSTUS	exon	12974342	12974563	.	-	.	transcript_id "Ledus.S1G126100.t1"; gene_id "Ledus.S1G126100"
Ledus.S1	AUGUSTUS	start_codon	12974561	12974563	.	-	0	transcript_id "Ledus.S1G126100.t1"; gene_id "Ledus.S1G126100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg548.t1 is derived from g7409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3172493	3174147	.	+	.	Ledus.S2G043000
Ledus.S2	AUGUSTUS	transcript	3172493	3174147	.	+	.	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	start_codon	3172493	3172495	.	+	0	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	CDS	3172493	3172617	0.99	+	0	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	exon	3172493	3172617	.	+	.	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	intron	3172618	3172909	.	+	.	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	CDS	3172910	3172935	1	+	1	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	exon	3172910	3172935	.	+	.	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	intron	3172936	3173195	.	+	.	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	CDS	3173196	3173285	1	+	2	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	exon	3173196	3173285	.	+	.	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	intron	3173286	3173826	.	+	.	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	CDS	3173827	3173915	0.98	+	2	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	exon	3173827	3173915	.	+	.	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	intron	3173916	3174021	.	+	.	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	CDS	3174022	3174147	0.95	+	0	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	exon	3174022	3174147	.	+	.	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
Ledus.S2	AUGUSTUS	stop_codon	3174148	3174150	.	+	0	transcript_id "Ledus.S2G043000.t1"; gene_id "Ledus.S2G043000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4277.t1 is derived from g1713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15914415	15914648	.	-	.	Ledus.S1G169800
Ledus.S1	AUGUSTUS	transcript	15914415	15914648	.	-	.	transcript_id "Ledus.S1G169800.t1"; gene_id "Ledus.S1G169800"
Ledus.S1	AUGUSTUS	stop_codon	15914412	15914414	.	-	0	transcript_id "Ledus.S1G169800.t1"; gene_id "Ledus.S1G169800"
Ledus.S1	AUGUSTUS	CDS	15914415	15914648	0.94	-	0	transcript_id "Ledus.S1G169800.t1"; gene_id "Ledus.S1G169800"
Ledus.S1	AUGUSTUS	exon	15914415	15914648	.	-	.	transcript_id "Ledus.S1G169800.t1"; gene_id "Ledus.S1G169800"
Ledus.S1	AUGUSTUS	start_codon	15914646	15914648	.	-	0	transcript_id "Ledus.S1G169800.t1"; gene_id "Ledus.S1G169800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11772.t1 is derived from g5391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6704885	6707167	.	-	.	Ledus.S4G092800
Ledus.S4	AUGUSTUS	transcript	6704885	6707167	.	-	.	transcript_id "Ledus.S4G092800.t1"; gene_id "Ledus.S4G092800"
Ledus.S4	AUGUSTUS	stop_codon	6704882	6704884	.	-	0	transcript_id "Ledus.S4G092800.t1"; gene_id "Ledus.S4G092800"
Ledus.S4	AUGUSTUS	CDS	6704885	6705877	1	-	0	transcript_id "Ledus.S4G092800.t1"; gene_id "Ledus.S4G092800"
Ledus.S4	AUGUSTUS	exon	6704885	6705877	.	-	.	transcript_id "Ledus.S4G092800.t1"; gene_id "Ledus.S4G092800"
Ledus.S4	AUGUSTUS	intron	6705878	6706021	.	-	.	transcript_id "Ledus.S4G092800.t1"; gene_id "Ledus.S4G092800"
Ledus.S4	AUGUSTUS	CDS	6706022	6707167	0.69	-	0	transcript_id "Ledus.S4G092800.t1"; gene_id "Ledus.S4G092800"
Ledus.S4	AUGUSTUS	exon	6706022	6707167	.	-	.	transcript_id "Ledus.S4G092800.t1"; gene_id "Ledus.S4G092800"
Ledus.S4	AUGUSTUS	start_codon	6707165	6707167	.	-	0	transcript_id "Ledus.S4G092800.t1"; gene_id "Ledus.S4G092800"
# This transcript jg1590.t2 is derived from g8451.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1591.t1 is derived from g8452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11168173	11171313	.	-	.	Ledus.S2G147300
Ledus.S2	AUGUSTUS	transcript	11168173	11171313	.	-	.	transcript_id "Ledus.S2G147300.t1"; gene_id "Ledus.S2G147300"
Ledus.S2	AUGUSTUS	stop_codon	11168170	11168172	.	-	0	transcript_id "Ledus.S2G147300.t1"; gene_id "Ledus.S2G147300"
Ledus.S2	AUGUSTUS	CDS	11168173	11171313	1	-	0	transcript_id "Ledus.S2G147300.t1"; gene_id "Ledus.S2G147300"
Ledus.S2	AUGUSTUS	exon	11168173	11171313	.	-	.	transcript_id "Ledus.S2G147300.t1"; gene_id "Ledus.S2G147300"
Ledus.S2	AUGUSTUS	start_codon	11171311	11171313	.	-	0	transcript_id "Ledus.S2G147300.t1"; gene_id "Ledus.S2G147300"
# This transcript jg5204.t2 is derived from g2643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5205.t1 is derived from g2644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22462241	22463614	.	-	.	Ledus.S1G262600
Ledus.S1	AUGUSTUS	transcript	22462241	22463614	.	-	.	transcript_id "Ledus.S1G262600.t1"; gene_id "Ledus.S1G262600"
Ledus.S1	AUGUSTUS	stop_codon	22462238	22462240	.	-	0	transcript_id "Ledus.S1G262600.t1"; gene_id "Ledus.S1G262600"
Ledus.S1	AUGUSTUS	CDS	22462241	22463614	0.48	-	0	transcript_id "Ledus.S1G262600.t1"; gene_id "Ledus.S1G262600"
Ledus.S1	AUGUSTUS	exon	22462241	22463614	.	-	.	transcript_id "Ledus.S1G262600.t1"; gene_id "Ledus.S1G262600"
Ledus.S1	AUGUSTUS	start_codon	22463612	22463614	.	-	0	transcript_id "Ledus.S1G262600.t1"; gene_id "Ledus.S1G262600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1314.t1 is derived from g8175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9218744	9219759	.	-	.	Ledus.S2G119600
Ledus.S2	AUGUSTUS	transcript	9218744	9219759	.	-	.	transcript_id "Ledus.S2G119600.t1"; gene_id "Ledus.S2G119600"
Ledus.S2	AUGUSTUS	stop_codon	9218741	9218743	.	-	0	transcript_id "Ledus.S2G119600.t1"; gene_id "Ledus.S2G119600"
Ledus.S2	AUGUSTUS	CDS	9218744	9219001	1	-	0	transcript_id "Ledus.S2G119600.t1"; gene_id "Ledus.S2G119600"
Ledus.S2	AUGUSTUS	exon	9218744	9219001	.	-	.	transcript_id "Ledus.S2G119600.t1"; gene_id "Ledus.S2G119600"
Ledus.S2	AUGUSTUS	intron	9219002	9219087	.	-	.	transcript_id "Ledus.S2G119600.t1"; gene_id "Ledus.S2G119600"
Ledus.S2	AUGUSTUS	CDS	9219088	9219759	0.91	-	0	transcript_id "Ledus.S2G119600.t1"; gene_id "Ledus.S2G119600"
Ledus.S2	AUGUSTUS	exon	9219088	9219759	.	-	.	transcript_id "Ledus.S2G119600.t1"; gene_id "Ledus.S2G119600"
Ledus.S2	AUGUSTUS	start_codon	9219757	9219759	.	-	0	transcript_id "Ledus.S2G119600.t1"; gene_id "Ledus.S2G119600"
# This transcript jg1937.t2 is derived from g8800.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1938.t1 is derived from g8801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13597428	13602382	.	-	.	Ledus.S2G182000
Ledus.S2	AUGUSTUS	transcript	13597428	13602382	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	stop_codon	13597425	13597427	.	-	0	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	CDS	13597428	13598337	0.99	-	1	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	exon	13597428	13598337	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	intron	13598338	13598511	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	CDS	13598512	13598608	0.68	-	2	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	exon	13598512	13598608	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	intron	13598609	13598716	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	CDS	13598717	13598783	0.98	-	0	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	exon	13598717	13598783	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	intron	13598784	13598919	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	CDS	13598920	13599015	0.79	-	0	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	exon	13598920	13599015	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	intron	13599016	13599130	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	CDS	13599131	13599311	0.96	-	1	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	exon	13599131	13599311	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	intron	13599312	13599471	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	CDS	13599472	13599549	0.99	-	1	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	exon	13599472	13599549	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	intron	13599550	13599674	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	CDS	13599675	13600576	0.99	-	0	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	exon	13599675	13600576	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	intron	13600577	13600798	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	CDS	13600799	13601750	0.99	-	1	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	exon	13600799	13601750	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	intron	13601751	13601856	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	CDS	13601857	13602017	1	-	0	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	exon	13601857	13602017	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	intron	13602018	13602334	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	CDS	13602335	13602382	0.98	-	0	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	exon	13602335	13602382	.	-	.	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
Ledus.S2	AUGUSTUS	start_codon	13602380	13602382	.	-	0	transcript_id "Ledus.S2G182000.t1"; gene_id "Ledus.S2G182000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12365.t1 is derived from g5986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11448674	11449240	.	+	.	Ledus.S4G152100
Ledus.S4	AUGUSTUS	transcript	11448674	11449240	.	+	.	transcript_id "Ledus.S4G152100.t1"; gene_id "Ledus.S4G152100"
Ledus.S4	AUGUSTUS	start_codon	11448674	11448676	.	+	0	transcript_id "Ledus.S4G152100.t1"; gene_id "Ledus.S4G152100"
Ledus.S4	AUGUSTUS	CDS	11448674	11448869	0.93	+	0	transcript_id "Ledus.S4G152100.t1"; gene_id "Ledus.S4G152100"
Ledus.S4	AUGUSTUS	exon	11448674	11448869	.	+	.	transcript_id "Ledus.S4G152100.t1"; gene_id "Ledus.S4G152100"
Ledus.S4	AUGUSTUS	intron	11448870	11448968	.	+	.	transcript_id "Ledus.S4G152100.t1"; gene_id "Ledus.S4G152100"
Ledus.S4	AUGUSTUS	CDS	11448969	11449240	0.95	+	2	transcript_id "Ledus.S4G152100.t1"; gene_id "Ledus.S4G152100"
Ledus.S4	AUGUSTUS	exon	11448969	11449240	.	+	.	transcript_id "Ledus.S4G152100.t1"; gene_id "Ledus.S4G152100"
Ledus.S4	AUGUSTUS	stop_codon	11449241	11449243	.	+	0	transcript_id "Ledus.S4G152100.t1"; gene_id "Ledus.S4G152100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg203.t1 is derived from g7064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	850342	856515	.	-	.	Ledus.S2G008500
Ledus.S2	AUGUSTUS	transcript	850342	856515	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	stop_codon	850339	850341	.	-	0	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	CDS	850342	850448	0.91	-	2	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	exon	850342	850448	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	intron	850449	850546	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	CDS	850547	850615	0.93	-	2	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	exon	850547	850615	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	intron	850616	850709	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	CDS	850710	850765	0.84	-	1	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	exon	850710	850765	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	intron	850766	850850	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	CDS	850851	855804	0.14	-	2	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	exon	850851	855804	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	intron	855805	855899	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	CDS	855900	855978	0.22	-	0	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	exon	855900	855978	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	intron	855979	856105	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	CDS	856106	856284	0.52	-	2	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	exon	856106	856284	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	intron	856285	856361	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	CDS	856362	856515	0.19	-	0	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	exon	856362	856515	.	-	.	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
Ledus.S2	AUGUSTUS	start_codon	856513	856515	.	-	0	transcript_id "Ledus.S2G008500.t1"; gene_id "Ledus.S2G008500"
# This transcript jg5415.t2 is derived from g2854.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5416.t1 is derived from g2855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24042126	24044686	.	-	.	Ledus.S1G283700
Ledus.S1	AUGUSTUS	transcript	24042126	24044686	.	-	.	transcript_id "Ledus.S1G283700.t1"; gene_id "Ledus.S1G283700"
Ledus.S1	AUGUSTUS	stop_codon	24042123	24042125	.	-	0	transcript_id "Ledus.S1G283700.t1"; gene_id "Ledus.S1G283700"
Ledus.S1	AUGUSTUS	CDS	24042126	24044182	1	-	2	transcript_id "Ledus.S1G283700.t1"; gene_id "Ledus.S1G283700"
Ledus.S1	AUGUSTUS	exon	24042126	24044182	.	-	.	transcript_id "Ledus.S1G283700.t1"; gene_id "Ledus.S1G283700"
Ledus.S1	AUGUSTUS	intron	24044183	24044283	.	-	.	transcript_id "Ledus.S1G283700.t1"; gene_id "Ledus.S1G283700"
Ledus.S1	AUGUSTUS	CDS	24044284	24044686	0.38	-	0	transcript_id "Ledus.S1G283700.t1"; gene_id "Ledus.S1G283700"
Ledus.S1	AUGUSTUS	exon	24044284	24044686	.	-	.	transcript_id "Ledus.S1G283700.t1"; gene_id "Ledus.S1G283700"
Ledus.S1	AUGUSTUS	start_codon	24044684	24044686	.	-	0	transcript_id "Ledus.S1G283700.t1"; gene_id "Ledus.S1G283700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8707.t1 is derived from g9737.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1525738	1526425	.	+	.	Ledus.S3G018400
Ledus.S3	AUGUSTUS	transcript	1525738	1526425	.	+	.	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	start_codon	1525738	1525740	.	+	0	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	CDS	1525738	1525802	0.66	+	0	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	exon	1525738	1525802	.	+	.	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	intron	1525803	1525901	.	+	.	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	CDS	1525902	1525948	0.67	+	1	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	exon	1525902	1525948	.	+	.	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	intron	1525949	1526030	.	+	.	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	CDS	1526031	1526133	0.67	+	2	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	exon	1526031	1526133	.	+	.	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	intron	1526134	1526232	.	+	.	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	CDS	1526233	1526425	0.96	+	1	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	exon	1526233	1526425	.	+	.	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
Ledus.S3	AUGUSTUS	stop_codon	1526426	1526428	.	+	0	transcript_id "Ledus.S3G018400.t1"; gene_id "Ledus.S3G018400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2149.t1 is derived from g9012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15290791	15295101	.	+	.	Ledus.S2G203100
Ledus.S2	AUGUSTUS	transcript	15290791	15295101	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	start_codon	15290791	15290793	.	+	0	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15290791	15291075	0.63	+	0	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15290791	15291075	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15291076	15291169	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15291170	15291285	1	+	0	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15291170	15291285	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15291286	15291524	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15291525	15291594	1	+	1	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15291525	15291594	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15291595	15291835	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15291836	15291915	1	+	0	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15291836	15291915	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15291916	15292130	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15292131	15292754	0.99	+	1	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15292131	15292754	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15292755	15292841	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15292842	15292920	1	+	1	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15292842	15292920	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15292921	15293036	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15293037	15293257	0.98	+	0	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15293037	15293257	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15293258	15293440	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15293441	15293534	1	+	1	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15293441	15293534	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15293535	15293618	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15293619	15293732	1	+	0	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15293619	15293732	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15293733	15293835	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15293836	15293912	0.99	+	0	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15293836	15293912	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15293913	15294043	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15294044	15294139	1	+	1	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15294044	15294139	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15294140	15294275	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15294276	15294387	1	+	1	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15294276	15294387	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15294388	15294487	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15294488	15294577	1	+	0	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15294488	15294577	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15294578	15294655	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15294656	15294763	1	+	0	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15294656	15294763	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	intron	15294764	15294897	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	CDS	15294898	15295101	1	+	0	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	exon	15294898	15295101	.	+	.	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
Ledus.S2	AUGUSTUS	stop_codon	15295102	15295104	.	+	0	transcript_id "Ledus.S2G203100.t1"; gene_id "Ledus.S2G203100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9325.t1 is derived from g10355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6105800	6107289	.	-	.	Ledus.S3G080200
Ledus.S3	AUGUSTUS	transcript	6105800	6107289	.	-	.	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	stop_codon	6105797	6105799	.	-	0	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	CDS	6105800	6106376	0.99	-	1	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	exon	6105800	6106376	.	-	.	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	intron	6106377	6106483	.	-	.	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	CDS	6106484	6106612	0.96	-	1	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	exon	6106484	6106612	.	-	.	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	intron	6106613	6106684	.	-	.	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	CDS	6106685	6106876	0.84	-	1	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	exon	6106685	6106876	.	-	.	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	intron	6106877	6107125	.	-	.	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	CDS	6107126	6107289	0.57	-	0	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	exon	6107126	6107289	.	-	.	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
Ledus.S3	AUGUSTUS	start_codon	6107287	6107289	.	-	0	transcript_id "Ledus.S3G080200.t1"; gene_id "Ledus.S3G080200"
# This transcript jg10741.t2 is derived from g11772.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10741.t3 is derived from g11772.t5 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10741.t4 is derived from g11772.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10742.t1 is derived from g11773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17438933	17440703	.	+	.	Ledus.S3G221900
Ledus.S3	AUGUSTUS	transcript	17438933	17440703	.	+	.	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	start_codon	17438933	17438935	.	+	0	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	CDS	17438933	17439284	0.9	+	0	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	exon	17438933	17439284	.	+	.	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	intron	17439285	17439352	.	+	.	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	CDS	17439353	17439894	1	+	2	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	exon	17439353	17439894	.	+	.	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	intron	17439895	17439976	.	+	.	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	CDS	17439977	17440225	1	+	0	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	exon	17439977	17440225	.	+	.	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	intron	17440226	17440310	.	+	.	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	CDS	17440311	17440703	0.83	+	0	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	exon	17440311	17440703	.	+	.	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
Ledus.S3	AUGUSTUS	stop_codon	17440704	17440706	.	+	0	transcript_id "Ledus.S3G221900.t1"; gene_id "Ledus.S3G221900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg667.t1 is derived from g7528.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3989734	3990168	.	+	.	Ledus.S2G054900
Ledus.S2	AUGUSTUS	transcript	3989734	3990168	.	+	.	transcript_id "Ledus.S2G054900.t1"; gene_id "Ledus.S2G054900"
Ledus.S2	AUGUSTUS	start_codon	3989734	3989736	.	+	0	transcript_id "Ledus.S2G054900.t1"; gene_id "Ledus.S2G054900"
Ledus.S2	AUGUSTUS	CDS	3989734	3989753	0.98	+	0	transcript_id "Ledus.S2G054900.t1"; gene_id "Ledus.S2G054900"
Ledus.S2	AUGUSTUS	exon	3989734	3989753	.	+	.	transcript_id "Ledus.S2G054900.t1"; gene_id "Ledus.S2G054900"
Ledus.S2	AUGUSTUS	intron	3989754	3989978	.	+	.	transcript_id "Ledus.S2G054900.t1"; gene_id "Ledus.S2G054900"
Ledus.S2	AUGUSTUS	CDS	3989979	3990168	0.46	+	1	transcript_id "Ledus.S2G054900.t1"; gene_id "Ledus.S2G054900"
Ledus.S2	AUGUSTUS	exon	3989979	3990168	.	+	.	transcript_id "Ledus.S2G054900.t1"; gene_id "Ledus.S2G054900"
Ledus.S2	AUGUSTUS	stop_codon	3990169	3990171	.	+	0	transcript_id "Ledus.S2G054900.t1"; gene_id "Ledus.S2G054900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6372.t1 is derived from g3815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30826958	30827914	.	-	.	Ledus.S1G379300
Ledus.S1	AUGUSTUS	transcript	30826958	30827914	.	-	.	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	stop_codon	30826955	30826957	.	-	0	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	CDS	30826958	30827098	0.99	-	0	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	exon	30826958	30827098	.	-	.	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	intron	30827099	30827195	.	-	.	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	CDS	30827196	30827325	0.9	-	1	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	exon	30827196	30827325	.	-	.	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	intron	30827326	30827427	.	-	.	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	CDS	30827428	30827576	0.99	-	0	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	exon	30827428	30827576	.	-	.	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	intron	30827577	30827656	.	-	.	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	CDS	30827657	30827914	1	-	0	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	exon	30827657	30827914	.	-	.	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
Ledus.S1	AUGUSTUS	start_codon	30827912	30827914	.	-	0	transcript_id "Ledus.S1G379300.t1"; gene_id "Ledus.S1G379300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5847.t1 is derived from g3289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27266098	27266457	.	+	.	Ledus.S1G326800
Ledus.S1	AUGUSTUS	transcript	27266098	27266457	.	+	.	transcript_id "Ledus.S1G326800.t1"; gene_id "Ledus.S1G326800"
Ledus.S1	AUGUSTUS	start_codon	27266098	27266100	.	+	0	transcript_id "Ledus.S1G326800.t1"; gene_id "Ledus.S1G326800"
Ledus.S1	AUGUSTUS	CDS	27266098	27266457	0.54	+	0	transcript_id "Ledus.S1G326800.t1"; gene_id "Ledus.S1G326800"
Ledus.S1	AUGUSTUS	exon	27266098	27266457	.	+	.	transcript_id "Ledus.S1G326800.t1"; gene_id "Ledus.S1G326800"
Ledus.S1	AUGUSTUS	stop_codon	27266458	27266460	.	+	0	transcript_id "Ledus.S1G326800.t1"; gene_id "Ledus.S1G326800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11535.t1 is derived from g5153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5154743	5157762	.	-	.	Ledus.S4G069100
Ledus.S4	AUGUSTUS	transcript	5155739	5157762	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	stop_codon	5155736	5155738	.	-	0	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5155739	5155765	1	-	0	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5155739	5155765	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5155766	5155941	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5155942	5156052	1	-	0	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5155942	5156052	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156053	5156140	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156141	5156204	0.94	-	1	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156141	5156204	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156205	5156339	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156340	5156539	0.93	-	0	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156340	5156539	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156540	5156700	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156701	5156828	1	-	2	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156701	5156828	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156829	5156917	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156918	5157043	1	-	2	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156918	5157043	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5157044	5157175	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5157176	5157265	1	-	2	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5157176	5157265	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5157266	5157367	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5157368	5157449	1	-	0	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5157368	5157449	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5157450	5157564	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5157565	5157762	0.99	-	0	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5157565	5157762	.	-	.	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	start_codon	5157760	5157762	.	-	0	transcript_id "Ledus.S4G069100.t1"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	transcript	5154743	5157762	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	stop_codon	5154740	5154742	.	-	0	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5154743	5154823	1	-	0	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5154743	5154823	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5154824	5155068	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5155069	5155125	0.99	-	0	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5155069	5155125	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5155126	5155416	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5155417	5155545	0.62	-	0	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5155417	5155545	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5155546	5155641	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5155642	5155779	0.92	-	0	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5155642	5155779	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5155780	5155941	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5155942	5156052	1	-	0	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5155942	5156052	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156053	5156140	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156141	5156204	0.94	-	1	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156141	5156204	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156205	5156339	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156340	5156539	0.93	-	0	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156340	5156539	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156540	5156700	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156701	5156828	1	-	2	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156701	5156828	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156829	5156917	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156918	5157043	1	-	2	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156918	5157043	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5157044	5157175	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5157176	5157265	1	-	2	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5157176	5157265	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5157266	5157367	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5157368	5157449	1	-	0	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5157368	5157449	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5157450	5157564	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5157565	5157762	0.97	-	0	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5157565	5157762	.	-	.	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	start_codon	5157760	5157762	.	-	0	transcript_id "Ledus.S4G069100.t2"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	transcript	5154743	5157762	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	stop_codon	5154740	5154742	.	-	0	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5154743	5154823	1	-	0	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5154743	5154823	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5154824	5155068	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5155069	5155125	0.99	-	0	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5155069	5155125	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5155126	5155416	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5155417	5155545	0.62	-	0	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5155417	5155545	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5155546	5155641	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5155642	5155779	0.93	-	0	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5155642	5155779	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5155780	5155941	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5155942	5156052	1	-	0	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5155942	5156052	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156053	5156140	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156141	5156197	0.99	-	0	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156141	5156197	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156198	5156339	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156340	5156368	0.84	-	2	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156340	5156368	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156369	5156451	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156452	5156539	0.83	-	0	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156452	5156539	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156540	5156700	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156701	5156828	1	-	2	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156701	5156828	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5156829	5156917	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5156918	5157043	1	-	2	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5156918	5157043	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5157044	5157175	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5157176	5157265	1	-	2	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5157176	5157265	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5157266	5157367	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5157368	5157449	1	-	0	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5157368	5157449	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	intron	5157450	5157564	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	CDS	5157565	5157762	0.96	-	0	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	exon	5157565	5157762	.	-	.	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
Ledus.S4	AUGUSTUS	start_codon	5157760	5157762	.	-	0	transcript_id "Ledus.S4G069100.t3"; gene_id "Ledus.S4G069100"
# This transcript jg9573.t2 is derived from g10603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9574.t1 is derived from g10604.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7884221	7886929	.	-	.	Ledus.S3G105100
Ledus.S3	AUGUSTUS	transcript	7884221	7886929	.	-	.	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	stop_codon	7884218	7884220	.	-	0	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	CDS	7884221	7886127	0.42	-	2	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	exon	7884221	7886127	.	-	.	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	intron	7886128	7886219	.	-	.	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	CDS	7886220	7886228	0.55	-	2	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	exon	7886220	7886228	.	-	.	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	intron	7886229	7886354	.	-	.	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	CDS	7886355	7886374	0.53	-	1	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	exon	7886355	7886374	.	-	.	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	intron	7886375	7886454	.	-	.	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	CDS	7886455	7886701	0.43	-	2	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	exon	7886455	7886701	.	-	.	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	intron	7886702	7886895	.	-	.	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	CDS	7886896	7886929	0.39	-	0	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	exon	7886896	7886929	.	-	.	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	start_codon	7886927	7886929	.	-	0	transcript_id "Ledus.S3G105100.t1"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	transcript	7884221	7886929	.	-	.	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	stop_codon	7884218	7884220	.	-	0	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	CDS	7884221	7886127	0.37	-	2	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	exon	7884221	7886127	.	-	.	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	intron	7886128	7886219	.	-	.	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	CDS	7886220	7886228	0.56	-	2	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	exon	7886220	7886228	.	-	.	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	intron	7886229	7886354	.	-	.	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	CDS	7886355	7886368	0.56	-	1	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	exon	7886355	7886368	.	-	.	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	intron	7886369	7886454	.	-	.	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	CDS	7886455	7886701	0.42	-	2	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	exon	7886455	7886701	.	-	.	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	intron	7886702	7886895	.	-	.	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	CDS	7886896	7886929	0.33	-	0	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	exon	7886896	7886929	.	-	.	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
Ledus.S3	AUGUSTUS	start_codon	7886927	7886929	.	-	0	transcript_id "Ledus.S3G105100.t2"; gene_id "Ledus.S3G105100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5086.t1 is derived from g2525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21492495	21494045	.	-	.	Ledus.S1G250700
Ledus.S1	AUGUSTUS	transcript	21492495	21494045	.	-	.	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	stop_codon	21492492	21492494	.	-	0	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	CDS	21492495	21492757	1	-	2	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	exon	21492495	21492757	.	-	.	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	intron	21492758	21492853	.	-	.	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	CDS	21492854	21493124	1	-	0	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	exon	21492854	21493124	.	-	.	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	intron	21493125	21493221	.	-	.	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	CDS	21493222	21493385	1	-	2	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	exon	21493222	21493385	.	-	.	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	intron	21493386	21493473	.	-	.	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	CDS	21493474	21493671	1	-	2	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	exon	21493474	21493671	.	-	.	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	intron	21493672	21493744	.	-	.	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	CDS	21493745	21494045	0.91	-	0	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	exon	21493745	21494045	.	-	.	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
Ledus.S1	AUGUSTUS	start_codon	21494043	21494045	.	-	0	transcript_id "Ledus.S1G250700.t1"; gene_id "Ledus.S1G250700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5768.t1 is derived from g3209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26667827	26668691	.	-	.	Ledus.S1G318900
Ledus.S1	AUGUSTUS	transcript	26667827	26668691	.	-	.	transcript_id "Ledus.S1G318900.t1"; gene_id "Ledus.S1G318900"
Ledus.S1	AUGUSTUS	stop_codon	26667824	26667826	.	-	0	transcript_id "Ledus.S1G318900.t1"; gene_id "Ledus.S1G318900"
Ledus.S1	AUGUSTUS	CDS	26667827	26668465	0.44	-	0	transcript_id "Ledus.S1G318900.t1"; gene_id "Ledus.S1G318900"
Ledus.S1	AUGUSTUS	exon	26667827	26668465	.	-	.	transcript_id "Ledus.S1G318900.t1"; gene_id "Ledus.S1G318900"
Ledus.S1	AUGUSTUS	intron	26668466	26668532	.	-	.	transcript_id "Ledus.S1G318900.t1"; gene_id "Ledus.S1G318900"
Ledus.S1	AUGUSTUS	CDS	26668533	26668691	0.76	-	0	transcript_id "Ledus.S1G318900.t1"; gene_id "Ledus.S1G318900"
Ledus.S1	AUGUSTUS	exon	26668533	26668691	.	-	.	transcript_id "Ledus.S1G318900.t1"; gene_id "Ledus.S1G318900"
Ledus.S1	AUGUSTUS	start_codon	26668689	26668691	.	-	0	transcript_id "Ledus.S1G318900.t1"; gene_id "Ledus.S1G318900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8006.t1 is derived from g12677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8458634	8458894	.	-	.	Ledus.S5G078400
Ledus.S5	AUGUSTUS	transcript	8458634	8458894	.	-	.	transcript_id "Ledus.S5G078400.t1"; gene_id "Ledus.S5G078400"
Ledus.S5	AUGUSTUS	stop_codon	8458631	8458633	.	-	0	transcript_id "Ledus.S5G078400.t1"; gene_id "Ledus.S5G078400"
Ledus.S5	AUGUSTUS	CDS	8458634	8458894	1	-	0	transcript_id "Ledus.S5G078400.t1"; gene_id "Ledus.S5G078400"
Ledus.S5	AUGUSTUS	exon	8458634	8458894	.	-	.	transcript_id "Ledus.S5G078400.t1"; gene_id "Ledus.S5G078400"
Ledus.S5	AUGUSTUS	start_codon	8458892	8458894	.	-	0	transcript_id "Ledus.S5G078400.t1"; gene_id "Ledus.S5G078400"
# This transcript jg9284.t2 is derived from g10314.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9285.t1 is derived from g10315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5780341	5784237	.	-	.	Ledus.S3G076200
Ledus.S3	AUGUSTUS	transcript	5780341	5784237	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	stop_codon	5780338	5780340	.	-	0	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5780341	5780593	0.43	-	1	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5780341	5780593	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5780594	5780703	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5780704	5780961	0.48	-	1	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5780704	5780961	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5780962	5781045	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5781046	5781203	0.99	-	0	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5781046	5781203	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5781204	5781301	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5781302	5781376	1	-	0	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5781302	5781376	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5781377	5781704	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5781705	5781762	1	-	1	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5781705	5781762	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5781763	5781886	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5781887	5781924	1	-	0	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5781887	5781924	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5781925	5782117	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5782118	5782218	1	-	2	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5782118	5782218	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5782219	5782329	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5782330	5782389	1	-	2	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5782330	5782389	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5782390	5782569	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5782570	5782666	1	-	0	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5782570	5782666	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5782667	5782814	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5782815	5782959	1	-	1	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5782815	5782959	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5782960	5783126	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5783127	5783305	1	-	0	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5783127	5783305	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5783306	5783493	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5783494	5783611	0.99	-	1	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5783494	5783611	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5783612	5783881	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5783882	5783905	0.45	-	1	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5783882	5783905	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5783906	5784214	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5784215	5784237	0.96	-	0	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5784215	5784237	.	-	.	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	start_codon	5784235	5784237	.	-	0	transcript_id "Ledus.S3G076200.t1"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	transcript	5780341	5784237	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	stop_codon	5780338	5780340	.	-	0	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5780341	5780593	0.39	-	1	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5780341	5780593	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5780594	5780703	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5780704	5780961	0.44	-	1	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5780704	5780961	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5780962	5781045	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5781046	5781203	1	-	0	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5781046	5781203	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5781204	5781301	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5781302	5781376	1	-	0	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5781302	5781376	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5781377	5781704	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5781705	5781762	1	-	1	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5781705	5781762	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5781763	5781886	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5781887	5781924	1	-	0	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5781887	5781924	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5781925	5782117	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5782118	5782141	0.9	-	0	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5782118	5782141	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5782142	5782389	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5782390	5782406	0.9	-	2	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5782390	5782406	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5782407	5782569	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5782570	5782666	0.99	-	0	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5782570	5782666	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5782667	5782814	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5782815	5782959	1	-	1	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5782815	5782959	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5782960	5783126	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5783127	5783305	1	-	0	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5783127	5783305	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5783306	5783493	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5783494	5783611	1	-	1	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5783494	5783611	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5783612	5783881	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5783882	5783905	0.51	-	1	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5783882	5783905	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	intron	5783906	5784214	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	CDS	5784215	5784237	0.99	-	0	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	exon	5784215	5784237	.	-	.	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
Ledus.S3	AUGUSTUS	start_codon	5784235	5784237	.	-	0	transcript_id "Ledus.S3G076200.t2"; gene_id "Ledus.S3G076200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6429.t1 is derived from g3872.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31210829	31212659	.	-	.	Ledus.S1G385000
Ledus.S1	AUGUSTUS	transcript	31210829	31212659	.	-	.	transcript_id "Ledus.S1G385000.t1"; gene_id "Ledus.S1G385000"
Ledus.S1	AUGUSTUS	stop_codon	31210826	31210828	.	-	0	transcript_id "Ledus.S1G385000.t1"; gene_id "Ledus.S1G385000"
Ledus.S1	AUGUSTUS	CDS	31210829	31210845	0.45	-	2	transcript_id "Ledus.S1G385000.t1"; gene_id "Ledus.S1G385000"
Ledus.S1	AUGUSTUS	exon	31210829	31210845	.	-	.	transcript_id "Ledus.S1G385000.t1"; gene_id "Ledus.S1G385000"
Ledus.S1	AUGUSTUS	intron	31210846	31210948	.	-	.	transcript_id "Ledus.S1G385000.t1"; gene_id "Ledus.S1G385000"
Ledus.S1	AUGUSTUS	CDS	31210949	31212659	0.02	-	0	transcript_id "Ledus.S1G385000.t1"; gene_id "Ledus.S1G385000"
Ledus.S1	AUGUSTUS	exon	31210949	31212659	.	-	.	transcript_id "Ledus.S1G385000.t1"; gene_id "Ledus.S1G385000"
Ledus.S1	AUGUSTUS	start_codon	31212657	31212659	.	-	0	transcript_id "Ledus.S1G385000.t1"; gene_id "Ledus.S1G385000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6105.t1 is derived from g3548.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28924606	28927416	.	+	.	Ledus.S1G352600
Ledus.S1	AUGUSTUS	transcript	28924606	28927416	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	start_codon	28924606	28924608	.	+	0	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	CDS	28924606	28924681	0.89	+	0	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	exon	28924606	28924681	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	intron	28924682	28924970	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	CDS	28924971	28925131	1	+	2	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	exon	28924971	28925131	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	intron	28925132	28925217	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	CDS	28925218	28925279	1	+	0	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	exon	28925218	28925279	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	intron	28925280	28925427	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	CDS	28925428	28925613	1	+	1	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	exon	28925428	28925613	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	intron	28925614	28925815	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	CDS	28925816	28925952	1	+	1	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	exon	28925816	28925952	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	intron	28925953	28926078	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	CDS	28926079	28926209	1	+	2	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	exon	28926079	28926209	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	intron	28926210	28926399	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	CDS	28926400	28926562	1	+	0	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	exon	28926400	28926562	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	intron	28926563	28926675	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	CDS	28926676	28926847	1	+	2	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	exon	28926676	28926847	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	intron	28926848	28926956	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	CDS	28926957	28927416	1	+	1	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	exon	28926957	28927416	.	+	.	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
Ledus.S1	AUGUSTUS	stop_codon	28927417	28927419	.	+	0	transcript_id "Ledus.S1G352600.t1"; gene_id "Ledus.S1G352600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8989.t1 is derived from g10019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3711891	3713949	.	-	.	Ledus.S3G046600
Ledus.S3	AUGUSTUS	transcript	3711891	3713949	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	stop_codon	3711888	3711890	.	-	0	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3711891	3711945	0.86	-	1	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3711891	3711945	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3711946	3712035	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3712036	3712169	0.86	-	0	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3712036	3712169	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3712170	3712279	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3712280	3712399	1	-	0	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3712280	3712399	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3712400	3712507	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3712508	3712690	1	-	0	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3712508	3712690	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3712691	3712810	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3712811	3712987	0.99	-	0	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3712811	3712987	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3712988	3713218	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3713219	3713269	1	-	0	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3713219	3713269	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3713270	3713389	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3713390	3713483	1	-	1	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3713390	3713483	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3713484	3713806	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3713807	3713949	1	-	0	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3713807	3713949	.	-	.	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	start_codon	3713947	3713949	.	-	0	transcript_id "Ledus.S3G046600.t1"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	transcript	3711891	3713949	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	stop_codon	3711888	3711890	.	-	0	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3711891	3711945	0.84	-	1	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3711891	3711945	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3711946	3712035	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3712036	3712169	0.7	-	0	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3712036	3712169	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3712170	3712279	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3712280	3712399	0.98	-	0	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3712280	3712399	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3712400	3712507	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3712508	3712690	1	-	0	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3712508	3712690	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3712691	3712810	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3712811	3712987	0.97	-	0	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3712811	3712987	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3712988	3713065	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3713066	3713073	0.57	-	2	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3713066	3713073	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3713074	3713214	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3713215	3713269	0.52	-	0	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3713215	3713269	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3713270	3713389	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3713390	3713483	0.95	-	1	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3713390	3713483	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	intron	3713484	3713806	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	CDS	3713807	3713949	1	-	0	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	exon	3713807	3713949	.	-	.	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
Ledus.S3	AUGUSTUS	start_codon	3713947	3713949	.	-	0	transcript_id "Ledus.S3G046600.t2"; gene_id "Ledus.S3G046600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3436.t1 is derived from g871.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8363770	8365980	.	+	.	Ledus.S1G085700
Ledus.S1	AUGUSTUS	transcript	8363770	8365980	.	+	.	transcript_id "Ledus.S1G085700.t1"; gene_id "Ledus.S1G085700"
Ledus.S1	AUGUSTUS	start_codon	8363770	8363772	.	+	0	transcript_id "Ledus.S1G085700.t1"; gene_id "Ledus.S1G085700"
Ledus.S1	AUGUSTUS	CDS	8363770	8365980	0.99	+	0	transcript_id "Ledus.S1G085700.t1"; gene_id "Ledus.S1G085700"
Ledus.S1	AUGUSTUS	exon	8363770	8365980	.	+	.	transcript_id "Ledus.S1G085700.t1"; gene_id "Ledus.S1G085700"
Ledus.S1	AUGUSTUS	stop_codon	8365981	8365983	.	+	0	transcript_id "Ledus.S1G085700.t1"; gene_id "Ledus.S1G085700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg971.t1 is derived from g7832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6389124	6389945	.	+	.	Ledus.S2G085300
Ledus.S2	AUGUSTUS	transcript	6389124	6389945	.	+	.	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	start_codon	6389124	6389126	.	+	0	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	CDS	6389124	6389195	0.77	+	0	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	exon	6389124	6389195	.	+	.	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	intron	6389196	6389269	.	+	.	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	CDS	6389270	6389560	1	+	0	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	exon	6389270	6389560	.	+	.	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	intron	6389561	6389638	.	+	.	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	CDS	6389639	6389761	1	+	0	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	exon	6389639	6389761	.	+	.	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	intron	6389762	6389861	.	+	.	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	CDS	6389862	6389945	0.93	+	0	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	exon	6389862	6389945	.	+	.	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
Ledus.S2	AUGUSTUS	stop_codon	6389946	6389948	.	+	0	transcript_id "Ledus.S2G085300.t1"; gene_id "Ledus.S2G085300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3038.t1 is derived from g473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5439480	5441926	.	+	.	Ledus.S1G045900
Ledus.S1	AUGUSTUS	transcript	5439480	5441926	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	start_codon	5439480	5439482	.	+	0	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	CDS	5439480	5439629	0.92	+	0	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	exon	5439480	5439629	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	intron	5439630	5439746	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	CDS	5439747	5439826	0.97	+	0	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	exon	5439747	5439826	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	intron	5439827	5439916	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	CDS	5439917	5440041	1	+	1	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	exon	5439917	5440041	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	intron	5440042	5440129	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	CDS	5440130	5440251	1	+	2	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	exon	5440130	5440251	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	intron	5440252	5440400	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	CDS	5440401	5440610	1	+	0	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	exon	5440401	5440610	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	intron	5440611	5440884	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	CDS	5440885	5440959	1	+	0	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	exon	5440885	5440959	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	intron	5440960	5441148	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	CDS	5441149	5441249	1	+	0	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	exon	5441149	5441249	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	intron	5441250	5441362	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	CDS	5441363	5441415	0.99	+	1	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	exon	5441363	5441415	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	intron	5441416	5441528	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	CDS	5441529	5441717	0.89	+	2	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	exon	5441529	5441717	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	intron	5441718	5441804	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	CDS	5441805	5441926	1	+	2	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	exon	5441805	5441926	.	+	.	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
Ledus.S1	AUGUSTUS	stop_codon	5441927	5441929	.	+	0	transcript_id "Ledus.S1G045900.t1"; gene_id "Ledus.S1G045900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5894.t1 is derived from g3337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27666068	27666271	.	+	.	Ledus.S1G331500
Ledus.S1	AUGUSTUS	transcript	27666068	27666271	.	+	.	transcript_id "Ledus.S1G331500.t1"; gene_id "Ledus.S1G331500"
Ledus.S1	AUGUSTUS	start_codon	27666068	27666070	.	+	0	transcript_id "Ledus.S1G331500.t1"; gene_id "Ledus.S1G331500"
Ledus.S1	AUGUSTUS	CDS	27666068	27666271	0.48	+	0	transcript_id "Ledus.S1G331500.t1"; gene_id "Ledus.S1G331500"
Ledus.S1	AUGUSTUS	exon	27666068	27666271	.	+	.	transcript_id "Ledus.S1G331500.t1"; gene_id "Ledus.S1G331500"
Ledus.S1	AUGUSTUS	stop_codon	27666272	27666274	.	+	0	transcript_id "Ledus.S1G331500.t1"; gene_id "Ledus.S1G331500"
# This transcript jg3173.t2 is derived from g608.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3174.t1 is derived from g609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6573326	6584125	.	-	.	Ledus.S1G059500
Ledus.S1	AUGUSTUS	transcript	6573326	6584125	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	stop_codon	6573323	6573325	.	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6573326	6573519	0.33	-	2	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6573326	6573519	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6573520	6574126	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6574127	6574589	0.9	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6574127	6574589	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6574590	6574769	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6574770	6575663	0.99	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6574770	6575663	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6575664	6575762	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6575763	6575876	1	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6575763	6575876	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6575877	6575981	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6575982	6576080	1	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6575982	6576080	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6576081	6576178	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6576179	6576415	1	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6576179	6576415	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6576416	6576500	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6576501	6576563	1	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6576501	6576563	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6576564	6576640	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6576641	6576791	1	-	1	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6576641	6576791	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6576792	6576958	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6576959	6577105	1	-	1	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6576959	6577105	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6577106	6577236	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6577237	6577338	1	-	1	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6577237	6577338	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6577339	6577521	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6577522	6577613	1	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6577522	6577613	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6577614	6577736	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6577737	6577832	1	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6577737	6577832	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6577833	6577916	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6577917	6578061	1	-	1	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6577917	6578061	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6578062	6578276	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6578277	6578365	1	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6578277	6578365	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6578366	6578605	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6578606	6578722	0.98	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6578606	6578722	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6578723	6578829	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6578830	6578907	0.99	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6578830	6578907	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6578908	6579191	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6579192	6579305	0.81	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6579192	6579305	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6579306	6579532	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6579533	6579548	0.77	-	1	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6579533	6579548	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6579549	6579602	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6579603	6579614	0.77	-	1	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6579603	6579614	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6579615	6579825	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6579826	6579911	0.7	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6579826	6579911	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6579912	6580099	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6580100	6580161	0.17	-	2	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6580100	6580161	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6580162	6580249	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6580250	6580433	0.18	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6580250	6580433	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6580434	6580711	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6580712	6580989	0.26	-	2	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6580712	6580989	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6580990	6581090	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6581091	6581171	0.59	-	2	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6581091	6581171	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6581172	6581662	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6581663	6581750	0.58	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6581663	6581750	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6581751	6581952	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6581953	6582054	0.96	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6581953	6582054	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6582055	6582146	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6582147	6582351	0.71	-	1	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6582147	6582351	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6582352	6582440	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6582441	6582603	0.96	-	2	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6582441	6582603	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6582604	6582724	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6582725	6583103	1	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6582725	6583103	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	intron	6583104	6583189	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	CDS	6583190	6584125	0.82	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	exon	6583190	6584125	.	-	.	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
Ledus.S1	AUGUSTUS	start_codon	6584123	6584125	.	-	0	transcript_id "Ledus.S1G059500.t1"; gene_id "Ledus.S1G059500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7187.t1 is derived from g6718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2041525	2041953	.	-	.	Ledus.C7G024800
Ledus.C7	AUGUSTUS	transcript	2041525	2041953	.	-	.	transcript_id "Ledus.C7G024800.t1"; gene_id "Ledus.C7G024800"
Ledus.C7	AUGUSTUS	stop_codon	2041522	2041524	.	-	0	transcript_id "Ledus.C7G024800.t1"; gene_id "Ledus.C7G024800"
Ledus.C7	AUGUSTUS	CDS	2041525	2041953	1	-	0	transcript_id "Ledus.C7G024800.t1"; gene_id "Ledus.C7G024800"
Ledus.C7	AUGUSTUS	exon	2041525	2041953	.	-	.	transcript_id "Ledus.C7G024800.t1"; gene_id "Ledus.C7G024800"
Ledus.C7	AUGUSTUS	start_codon	2041951	2041953	.	-	0	transcript_id "Ledus.C7G024800.t1"; gene_id "Ledus.C7G024800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4411.t1 is derived from g1847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16943420	16946678	.	-	.	Ledus.S1G183200
Ledus.S1	AUGUSTUS	transcript	16943420	16946678	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	stop_codon	16943417	16943419	.	-	0	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16943420	16943573	0.6	-	1	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16943420	16943573	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16943574	16943656	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16943657	16943753	0.54	-	2	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16943657	16943753	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16943754	16943866	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16943867	16943909	0.6	-	0	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16943867	16943909	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16943910	16943984	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16943985	16944020	0.93	-	0	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16943985	16944020	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16944021	16944125	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16944126	16944201	0.92	-	1	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16944126	16944201	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16944202	16944306	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16944307	16944367	0.95	-	2	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16944307	16944367	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16944368	16944447	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16944448	16944547	1	-	0	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16944448	16944547	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16944548	16944636	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16944637	16944783	1	-	0	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16944637	16944783	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16944784	16944908	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16944909	16945037	1	-	0	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16944909	16945037	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16945038	16945214	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16945215	16945322	1	-	0	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16945215	16945322	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16945323	16945419	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16945420	16945484	1	-	2	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16945420	16945484	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16945485	16945625	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16945626	16945711	1	-	1	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16945626	16945711	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16945712	16945845	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16945846	16945881	1	-	1	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16945846	16945881	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16945882	16946039	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16946040	16946146	1	-	0	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16946040	16946146	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16946147	16946300	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16946301	16946389	1	-	2	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16946301	16946389	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16946390	16946506	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16946507	16946678	0.98	-	0	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16946507	16946678	.	-	.	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	start_codon	16946676	16946678	.	-	0	transcript_id "Ledus.S1G183200.t1"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	transcript	16943420	16946678	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	stop_codon	16943417	16943419	.	-	0	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16943420	16943573	0.58	-	1	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16943420	16943573	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16943574	16943656	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16943657	16943753	0.49	-	2	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16943657	16943753	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16943754	16943866	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16943867	16943909	0.57	-	0	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16943867	16943909	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16943910	16943984	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16943985	16944020	0.95	-	0	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16943985	16944020	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16944021	16944125	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16944126	16944201	0.94	-	1	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16944126	16944201	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16944202	16944306	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16944307	16944367	0.98	-	2	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16944307	16944367	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16944368	16944447	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16944448	16944547	1	-	0	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16944448	16944547	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16944548	16944636	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16944637	16944783	1	-	0	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16944637	16944783	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16944784	16944908	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16944909	16945037	0.99	-	0	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16944909	16945037	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16945038	16945214	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16945215	16945322	1	-	0	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16945215	16945322	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16945323	16945419	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16945420	16945484	1	-	2	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16945420	16945484	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16945485	16945622	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16945623	16945711	1	-	1	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16945623	16945711	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16945712	16945845	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16945846	16945881	1	-	1	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16945846	16945881	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16945882	16946039	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16946040	16946146	1	-	0	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16946040	16946146	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16946147	16946300	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16946301	16946389	1	-	2	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16946301	16946389	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	intron	16946390	16946506	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	CDS	16946507	16946678	0.97	-	0	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	exon	16946507	16946678	.	-	.	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
Ledus.S1	AUGUSTUS	start_codon	16946676	16946678	.	-	0	transcript_id "Ledus.S1G183200.t2"; gene_id "Ledus.S1G183200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1511.t1 is derived from g8372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10638813	10641793	.	+	.	Ledus.S2G139300
Ledus.S2	AUGUSTUS	transcript	10638813	10641793	.	+	.	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	start_codon	10638813	10638815	.	+	0	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	CDS	10638813	10638820	1	+	0	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	exon	10638813	10638820	.	+	.	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	intron	10638821	10640490	.	+	.	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	CDS	10640491	10640533	1	+	1	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	exon	10640491	10640533	.	+	.	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	intron	10640534	10640651	.	+	.	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	CDS	10640652	10640693	1	+	0	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	exon	10640652	10640693	.	+	.	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	intron	10640694	10640777	.	+	.	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	CDS	10640778	10640988	1	+	0	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	exon	10640778	10640988	.	+	.	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	intron	10640989	10641221	.	+	.	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	CDS	10641222	10641793	0.69	+	2	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	exon	10641222	10641793	.	+	.	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
Ledus.S2	AUGUSTUS	stop_codon	10641794	10641796	.	+	0	transcript_id "Ledus.S2G139300.t1"; gene_id "Ledus.S2G139300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11831.t1 is derived from g5450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7120623	7122297	.	-	.	Ledus.S4G098700
Ledus.S4	AUGUSTUS	transcript	7121438	7122297	.	-	.	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	stop_codon	7121435	7121437	.	-	0	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	CDS	7121438	7121441	1	-	1	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	exon	7121438	7121441	.	-	.	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	intron	7121442	7121586	.	-	.	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	CDS	7121587	7121675	1	-	0	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	exon	7121587	7121675	.	-	.	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	intron	7121676	7121858	.	-	.	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	CDS	7121859	7121938	1	-	2	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	exon	7121859	7121938	.	-	.	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	intron	7121939	7122248	.	-	.	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	CDS	7122249	7122297	0.95	-	0	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	exon	7122249	7122297	.	-	.	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	start_codon	7122295	7122297	.	-	0	transcript_id "Ledus.S4G098700.t1"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	transcript	7120623	7122297	.	-	.	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	stop_codon	7120620	7120622	.	-	0	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	CDS	7120623	7120977	0.99	-	1	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	exon	7120623	7120977	.	-	.	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	intron	7120978	7121146	.	-	.	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	CDS	7121147	7121213	0.78	-	2	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	exon	7121147	7121213	.	-	.	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	intron	7121214	7121324	.	-	.	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	CDS	7121325	7121441	0.78	-	2	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	exon	7121325	7121441	.	-	.	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	intron	7121442	7121586	.	-	.	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	CDS	7121587	7121635	1	-	0	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	exon	7121587	7121635	.	-	.	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	intron	7121636	7121858	.	-	.	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	CDS	7121859	7121938	1	-	2	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	exon	7121859	7121938	.	-	.	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	intron	7121939	7122248	.	-	.	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	CDS	7122249	7122297	0.97	-	0	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	exon	7122249	7122297	.	-	.	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
Ledus.S4	AUGUSTUS	start_codon	7122295	7122297	.	-	0	transcript_id "Ledus.S4G098700.t2"; gene_id "Ledus.S4G098700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg696.t1 is derived from g7557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4281515	4282162	.	-	.	Ledus.S2G057800
Ledus.S2	AUGUSTUS	transcript	4281515	4282162	.	-	.	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	stop_codon	4281512	4281514	.	-	0	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	CDS	4281515	4281620	0.98	-	1	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	exon	4281515	4281620	.	-	.	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	intron	4281621	4281756	.	-	.	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	CDS	4281757	4281795	0.97	-	1	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	exon	4281757	4281795	.	-	.	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	intron	4281796	4281907	.	-	.	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	CDS	4281908	4281978	1	-	0	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	exon	4281908	4281978	.	-	.	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	intron	4281979	4282108	.	-	.	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	CDS	4282109	4282162	1	-	0	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	exon	4282109	4282162	.	-	.	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
Ledus.S2	AUGUSTUS	start_codon	4282160	4282162	.	-	0	transcript_id "Ledus.S2G057800.t1"; gene_id "Ledus.S2G057800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1951.t1 is derived from g8814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13660173	13661125	.	+	.	Ledus.S2G183300
Ledus.S2	AUGUSTUS	transcript	13660173	13661125	.	+	.	transcript_id "Ledus.S2G183300.t1"; gene_id "Ledus.S2G183300"
Ledus.S2	AUGUSTUS	start_codon	13660173	13660175	.	+	0	transcript_id "Ledus.S2G183300.t1"; gene_id "Ledus.S2G183300"
Ledus.S2	AUGUSTUS	CDS	13660173	13660245	1	+	0	transcript_id "Ledus.S2G183300.t1"; gene_id "Ledus.S2G183300"
Ledus.S2	AUGUSTUS	exon	13660173	13660245	.	+	.	transcript_id "Ledus.S2G183300.t1"; gene_id "Ledus.S2G183300"
Ledus.S2	AUGUSTUS	intron	13660246	13660355	.	+	.	transcript_id "Ledus.S2G183300.t1"; gene_id "Ledus.S2G183300"
Ledus.S2	AUGUSTUS	CDS	13660356	13661125	1	+	2	transcript_id "Ledus.S2G183300.t1"; gene_id "Ledus.S2G183300"
Ledus.S2	AUGUSTUS	exon	13660356	13661125	.	+	.	transcript_id "Ledus.S2G183300.t1"; gene_id "Ledus.S2G183300"
Ledus.S2	AUGUSTUS	stop_codon	13661126	13661128	.	+	0	transcript_id "Ledus.S2G183300.t1"; gene_id "Ledus.S2G183300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11482.t1 is derived from g5100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4865786	4866488	.	+	.	Ledus.S4G063800
Ledus.S4	AUGUSTUS	transcript	4865786	4866488	.	+	.	transcript_id "Ledus.S4G063800.t1"; gene_id "Ledus.S4G063800"
Ledus.S4	AUGUSTUS	start_codon	4865786	4865788	.	+	0	transcript_id "Ledus.S4G063800.t1"; gene_id "Ledus.S4G063800"
Ledus.S4	AUGUSTUS	CDS	4865786	4865935	0.85	+	0	transcript_id "Ledus.S4G063800.t1"; gene_id "Ledus.S4G063800"
Ledus.S4	AUGUSTUS	exon	4865786	4865935	.	+	.	transcript_id "Ledus.S4G063800.t1"; gene_id "Ledus.S4G063800"
Ledus.S4	AUGUSTUS	intron	4865936	4866061	.	+	.	transcript_id "Ledus.S4G063800.t1"; gene_id "Ledus.S4G063800"
Ledus.S4	AUGUSTUS	CDS	4866062	4866243	1	+	0	transcript_id "Ledus.S4G063800.t1"; gene_id "Ledus.S4G063800"
Ledus.S4	AUGUSTUS	exon	4866062	4866243	.	+	.	transcript_id "Ledus.S4G063800.t1"; gene_id "Ledus.S4G063800"
Ledus.S4	AUGUSTUS	intron	4866244	4866334	.	+	.	transcript_id "Ledus.S4G063800.t1"; gene_id "Ledus.S4G063800"
Ledus.S4	AUGUSTUS	CDS	4866335	4866488	0.99	+	1	transcript_id "Ledus.S4G063800.t1"; gene_id "Ledus.S4G063800"
Ledus.S4	AUGUSTUS	exon	4866335	4866488	.	+	.	transcript_id "Ledus.S4G063800.t1"; gene_id "Ledus.S4G063800"
Ledus.S4	AUGUSTUS	stop_codon	4866489	4866491	.	+	0	transcript_id "Ledus.S4G063800.t1"; gene_id "Ledus.S4G063800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4937.t1 is derived from g2375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20795566	20796594	.	+	.	Ledus.S1G235800
Ledus.S1	AUGUSTUS	transcript	20795566	20796594	.	+	.	transcript_id "Ledus.S1G235800.t1"; gene_id "Ledus.S1G235800"
Ledus.S1	AUGUSTUS	start_codon	20795566	20795568	.	+	0	transcript_id "Ledus.S1G235800.t1"; gene_id "Ledus.S1G235800"
Ledus.S1	AUGUSTUS	CDS	20795566	20796192	0.94	+	0	transcript_id "Ledus.S1G235800.t1"; gene_id "Ledus.S1G235800"
Ledus.S1	AUGUSTUS	exon	20795566	20796192	.	+	.	transcript_id "Ledus.S1G235800.t1"; gene_id "Ledus.S1G235800"
Ledus.S1	AUGUSTUS	intron	20796193	20796290	.	+	.	transcript_id "Ledus.S1G235800.t1"; gene_id "Ledus.S1G235800"
Ledus.S1	AUGUSTUS	CDS	20796291	20796358	0.97	+	0	transcript_id "Ledus.S1G235800.t1"; gene_id "Ledus.S1G235800"
Ledus.S1	AUGUSTUS	exon	20796291	20796358	.	+	.	transcript_id "Ledus.S1G235800.t1"; gene_id "Ledus.S1G235800"
Ledus.S1	AUGUSTUS	intron	20796359	20796584	.	+	.	transcript_id "Ledus.S1G235800.t1"; gene_id "Ledus.S1G235800"
Ledus.S1	AUGUSTUS	CDS	20796585	20796594	1	+	1	transcript_id "Ledus.S1G235800.t1"; gene_id "Ledus.S1G235800"
Ledus.S1	AUGUSTUS	exon	20796585	20796594	.	+	.	transcript_id "Ledus.S1G235800.t1"; gene_id "Ledus.S1G235800"
Ledus.S1	AUGUSTUS	stop_codon	20796595	20796597	.	+	0	transcript_id "Ledus.S1G235800.t1"; gene_id "Ledus.S1G235800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg584.t1 is derived from g7445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3456991	3459619	.	+	.	Ledus.S2G046600
Ledus.S2	AUGUSTUS	transcript	3456991	3459619	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	start_codon	3456991	3456993	.	+	0	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	CDS	3456991	3457137	0.83	+	0	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	exon	3456991	3457137	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	intron	3457138	3457208	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	CDS	3457209	3457307	1	+	0	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	exon	3457209	3457307	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	intron	3457308	3457406	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	CDS	3457407	3457508	1	+	0	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	exon	3457407	3457508	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	intron	3457509	3457583	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	CDS	3457584	3457666	1	+	0	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	exon	3457584	3457666	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	intron	3457667	3457781	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	CDS	3457782	3457898	1	+	1	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	exon	3457782	3457898	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	intron	3457899	3457998	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	CDS	3457999	3458101	1	+	1	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	exon	3457999	3458101	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	intron	3458102	3458190	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	CDS	3458191	3459046	0.99	+	0	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	exon	3458191	3459046	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	intron	3459047	3459130	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	CDS	3459131	3459405	0.99	+	2	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	exon	3459131	3459405	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	intron	3459406	3459487	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	CDS	3459488	3459619	0.87	+	0	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	exon	3459488	3459619	.	+	.	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
Ledus.S2	AUGUSTUS	stop_codon	3459620	3459622	.	+	0	transcript_id "Ledus.S2G046600.t1"; gene_id "Ledus.S2G046600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8151.t1 is derived from g12822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9423968	9424306	.	-	.	Ledus.S5G092900
Ledus.S5	AUGUSTUS	transcript	9423968	9424306	.	-	.	transcript_id "Ledus.S5G092900.t1"; gene_id "Ledus.S5G092900"
Ledus.S5	AUGUSTUS	stop_codon	9423965	9423967	.	-	0	transcript_id "Ledus.S5G092900.t1"; gene_id "Ledus.S5G092900"
Ledus.S5	AUGUSTUS	CDS	9423968	9424306	0.32	-	0	transcript_id "Ledus.S5G092900.t1"; gene_id "Ledus.S5G092900"
Ledus.S5	AUGUSTUS	exon	9423968	9424306	.	-	.	transcript_id "Ledus.S5G092900.t1"; gene_id "Ledus.S5G092900"
Ledus.S5	AUGUSTUS	start_codon	9424304	9424306	.	-	0	transcript_id "Ledus.S5G092900.t1"; gene_id "Ledus.S5G092900"
# This transcript jg6169.t2 is derived from g3612.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6170.t1 is derived from g3613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29374300	29375358	.	-	.	Ledus.S1G359100
Ledus.S1	AUGUSTUS	transcript	29374300	29375358	.	-	.	transcript_id "Ledus.S1G359100.t1"; gene_id "Ledus.S1G359100"
Ledus.S1	AUGUSTUS	stop_codon	29374297	29374299	.	-	0	transcript_id "Ledus.S1G359100.t1"; gene_id "Ledus.S1G359100"
Ledus.S1	AUGUSTUS	CDS	29374300	29374377	0.56	-	0	transcript_id "Ledus.S1G359100.t1"; gene_id "Ledus.S1G359100"
Ledus.S1	AUGUSTUS	exon	29374300	29374377	.	-	.	transcript_id "Ledus.S1G359100.t1"; gene_id "Ledus.S1G359100"
Ledus.S1	AUGUSTUS	intron	29374378	29374520	.	-	.	transcript_id "Ledus.S1G359100.t1"; gene_id "Ledus.S1G359100"
Ledus.S1	AUGUSTUS	CDS	29374521	29375091	0.56	-	1	transcript_id "Ledus.S1G359100.t1"; gene_id "Ledus.S1G359100"
Ledus.S1	AUGUSTUS	exon	29374521	29375091	.	-	.	transcript_id "Ledus.S1G359100.t1"; gene_id "Ledus.S1G359100"
Ledus.S1	AUGUSTUS	intron	29375092	29375182	.	-	.	transcript_id "Ledus.S1G359100.t1"; gene_id "Ledus.S1G359100"
Ledus.S1	AUGUSTUS	CDS	29375183	29375358	0.99	-	0	transcript_id "Ledus.S1G359100.t1"; gene_id "Ledus.S1G359100"
Ledus.S1	AUGUSTUS	exon	29375183	29375358	.	-	.	transcript_id "Ledus.S1G359100.t1"; gene_id "Ledus.S1G359100"
Ledus.S1	AUGUSTUS	start_codon	29375356	29375358	.	-	0	transcript_id "Ledus.S1G359100.t1"; gene_id "Ledus.S1G359100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6990.t1 is derived from g6521.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	596191	602054	.	-	.	Ledus.C7G005100
Ledus.C7	AUGUSTUS	transcript	596191	602054	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	stop_codon	596188	596190	.	-	0	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	596191	596261	1	-	2	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	596191	596261	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	596262	596339	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	596340	596718	1	-	0	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	596340	596718	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	596719	597090	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	597091	597486	1	-	0	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	597091	597486	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	597487	597623	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	597624	597708	1	-	1	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	597624	597708	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	597709	597825	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	597826	597962	1	-	0	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	597826	597962	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	597963	598089	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	598090	598399	1	-	1	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	598090	598399	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	598400	598587	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	598588	598673	1	-	0	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	598588	598673	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	598674	598795	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	598796	598990	1	-	0	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	598796	598990	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	598991	599138	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	599139	600486	1	-	1	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	599139	600486	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	600487	600584	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	600585	600633	0.88	-	2	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	600585	600633	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	600634	600706	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	600707	600767	1	-	0	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	600707	600767	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	600768	600846	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	600847	600900	1	-	0	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	600847	600900	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	600901	601005	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	601006	601083	0.78	-	0	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	601006	601083	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	601084	601184	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	601185	601299	1	-	1	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	601185	601299	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	601300	601404	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	601405	601550	1	-	0	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	601405	601550	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	601551	601635	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	601636	601886	1	-	2	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	601636	601886	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	intron	601887	601966	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	CDS	601967	602054	0.97	-	0	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	exon	601967	602054	.	-	.	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
Ledus.C7	AUGUSTUS	start_codon	602052	602054	.	-	0	transcript_id "Ledus.C7G005100.t1"; gene_id "Ledus.C7G005100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1699.t1 is derived from g8560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11958631	11961033	.	+	.	Ledus.S2G158100
Ledus.S2	AUGUSTUS	transcript	11958631	11961033	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	start_codon	11958631	11958633	.	+	0	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	CDS	11958631	11959584	0.64	+	0	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	exon	11958631	11959584	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	intron	11959585	11959709	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	CDS	11959710	11959979	0.98	+	0	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	exon	11959710	11959979	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	intron	11959980	11960091	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	CDS	11960092	11960202	0.99	+	0	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	exon	11960092	11960202	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	intron	11960203	11960277	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	CDS	11960278	11960357	1	+	0	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	exon	11960278	11960357	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	intron	11960358	11960440	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	CDS	11960441	11960498	0.61	+	1	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	exon	11960441	11960498	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	intron	11960499	11960690	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	CDS	11960691	11960762	0.39	+	0	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	exon	11960691	11960762	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	intron	11960763	11960928	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	CDS	11960929	11961033	0.35	+	0	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	exon	11960929	11961033	.	+	.	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
Ledus.S2	AUGUSTUS	stop_codon	11961034	11961036	.	+	0	transcript_id "Ledus.S2G158100.t1"; gene_id "Ledus.S2G158100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5842.t1 is derived from g3284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27254280	27258168	.	-	.	Ledus.S1G326300
Ledus.S1	AUGUSTUS	transcript	27254280	27258168	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	stop_codon	27254277	27254279	.	-	0	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	CDS	27254280	27254468	0.9	-	0	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	exon	27254280	27254468	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	intron	27254469	27254553	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	CDS	27254554	27254644	1	-	1	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	exon	27254554	27254644	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	intron	27254645	27254725	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	CDS	27254726	27255138	1	-	0	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	exon	27254726	27255138	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	intron	27255139	27255227	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	CDS	27255228	27256105	0.98	-	2	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	exon	27255228	27256105	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	intron	27256106	27256207	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	CDS	27256208	27256216	0.89	-	2	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	exon	27256208	27256216	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	intron	27256217	27256349	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	CDS	27256350	27256782	0.75	-	0	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	exon	27256350	27256782	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	intron	27256783	27256850	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	CDS	27256851	27256905	0.79	-	1	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	exon	27256851	27256905	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	intron	27256906	27257143	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	CDS	27257144	27257281	1	-	1	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	exon	27257144	27257281	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	intron	27257282	27257425	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	CDS	27257426	27257533	1	-	1	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	exon	27257426	27257533	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	intron	27257534	27257676	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	CDS	27257677	27257772	1	-	1	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	exon	27257677	27257772	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	intron	27257773	27258019	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	CDS	27258020	27258168	0.67	-	0	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	exon	27258020	27258168	.	-	.	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
Ledus.S1	AUGUSTUS	start_codon	27258166	27258168	.	-	0	transcript_id "Ledus.S1G326300.t1"; gene_id "Ledus.S1G326300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8345.t1 is derived from g13017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10912889	10914065	.	-	.	Ledus.S5G112300
Ledus.S5	AUGUSTUS	transcript	10912889	10914065	.	-	.	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	stop_codon	10912886	10912888	.	-	0	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	CDS	10912889	10912985	0.77	-	1	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	exon	10912889	10912985	.	-	.	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	intron	10912986	10913068	.	-	.	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	CDS	10913069	10913211	1	-	0	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	exon	10913069	10913211	.	-	.	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	intron	10913212	10913310	.	-	.	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	CDS	10913311	10913396	0.87	-	2	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	exon	10913311	10913396	.	-	.	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	intron	10913397	10913473	.	-	.	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	CDS	10913474	10913514	0.58	-	1	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	exon	10913474	10913514	.	-	.	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	intron	10913515	10913604	.	-	.	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	CDS	10913605	10913834	0.59	-	0	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	exon	10913605	10913834	.	-	.	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	intron	10913835	10913945	.	-	.	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	CDS	10913946	10914065	0.83	-	0	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	exon	10913946	10914065	.	-	.	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
Ledus.S5	AUGUSTUS	start_codon	10914063	10914065	.	-	0	transcript_id "Ledus.S5G112300.t1"; gene_id "Ledus.S5G112300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13110.t1 is derived from g6920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5901870	5903797	.	-	.	Ledus.S6G017200
Ledus.S6	AUGUSTUS	transcript	5901870	5903797	.	-	.	transcript_id "Ledus.S6G017200.t1"; gene_id "Ledus.S6G017200"
Ledus.S6	AUGUSTUS	stop_codon	5901867	5901869	.	-	0	transcript_id "Ledus.S6G017200.t1"; gene_id "Ledus.S6G017200"
Ledus.S6	AUGUSTUS	CDS	5901870	5902609	0.99	-	2	transcript_id "Ledus.S6G017200.t1"; gene_id "Ledus.S6G017200"
Ledus.S6	AUGUSTUS	exon	5901870	5902609	.	-	.	transcript_id "Ledus.S6G017200.t1"; gene_id "Ledus.S6G017200"
Ledus.S6	AUGUSTUS	intron	5902610	5902805	.	-	.	transcript_id "Ledus.S6G017200.t1"; gene_id "Ledus.S6G017200"
Ledus.S6	AUGUSTUS	CDS	5902806	5903304	0.01	-	0	transcript_id "Ledus.S6G017200.t1"; gene_id "Ledus.S6G017200"
Ledus.S6	AUGUSTUS	exon	5902806	5903304	.	-	.	transcript_id "Ledus.S6G017200.t1"; gene_id "Ledus.S6G017200"
Ledus.S6	AUGUSTUS	intron	5903305	5903716	.	-	.	transcript_id "Ledus.S6G017200.t1"; gene_id "Ledus.S6G017200"
Ledus.S6	AUGUSTUS	CDS	5903717	5903797	0.01	-	0	transcript_id "Ledus.S6G017200.t1"; gene_id "Ledus.S6G017200"
Ledus.S6	AUGUSTUS	exon	5903717	5903797	.	-	.	transcript_id "Ledus.S6G017200.t1"; gene_id "Ledus.S6G017200"
Ledus.S6	AUGUSTUS	start_codon	5903795	5903797	.	-	0	transcript_id "Ledus.S6G017200.t1"; gene_id "Ledus.S6G017200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6645.t1 is derived from g4088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32845163	32846489	.	-	.	Ledus.S1G406600
Ledus.S1	AUGUSTUS	transcript	32845163	32846489	.	-	.	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	stop_codon	32845160	32845162	.	-	0	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	CDS	32845163	32845569	1	-	2	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	exon	32845163	32845569	.	-	.	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	intron	32845570	32845647	.	-	.	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	CDS	32845648	32845816	0.99	-	0	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	exon	32845648	32845816	.	-	.	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	intron	32845817	32845895	.	-	.	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	CDS	32845896	32846084	0.99	-	0	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	exon	32845896	32846084	.	-	.	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	intron	32846085	32846169	.	-	.	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	CDS	32846170	32846331	0.7	-	0	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	exon	32846170	32846331	.	-	.	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	intron	32846332	32846432	.	-	.	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	CDS	32846433	32846489	0.69	-	0	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	exon	32846433	32846489	.	-	.	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
Ledus.S1	AUGUSTUS	start_codon	32846487	32846489	.	-	0	transcript_id "Ledus.S1G406600.t1"; gene_id "Ledus.S1G406600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7435.t1 is derived from g12106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2617166	2618272	.	-	.	Ledus.S5G021300
Ledus.S5	AUGUSTUS	transcript	2617166	2618272	.	-	.	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	stop_codon	2617163	2617165	.	-	0	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	CDS	2617166	2617309	0.94	-	0	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	exon	2617166	2617309	.	-	.	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	intron	2617310	2617389	.	-	.	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	CDS	2617390	2617510	0.73	-	1	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	exon	2617390	2617510	.	-	.	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	intron	2617511	2617992	.	-	.	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	CDS	2617993	2618017	0.21	-	2	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	exon	2617993	2618017	.	-	.	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	intron	2618018	2618262	.	-	.	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	CDS	2618263	2618272	0.32	-	0	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	exon	2618263	2618272	.	-	.	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
Ledus.S5	AUGUSTUS	start_codon	2618270	2618272	.	-	0	transcript_id "Ledus.S5G021300.t1"; gene_id "Ledus.S5G021300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10300.t1 is derived from g11330.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14127048	14128855	.	-	.	Ledus.S3G177700
Ledus.S3	AUGUSTUS	transcript	14127048	14128855	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	stop_codon	14127045	14127047	.	-	0	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14127048	14127118	0.76	-	2	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14127048	14127118	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14127119	14127197	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14127198	14127489	0.72	-	0	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14127198	14127489	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14127490	14127575	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14127576	14127663	1	-	1	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14127576	14127663	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14127664	14127770	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14127771	14127863	1	-	1	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14127771	14127863	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14127864	14127947	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14127948	14128293	1	-	2	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14127948	14128293	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14128294	14128375	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14128376	14128458	0.93	-	1	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14128376	14128458	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14128459	14128541	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14128542	14128551	0.94	-	2	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14128542	14128551	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14128552	14128761	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14128762	14128855	0.9	-	0	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14128762	14128855	.	-	.	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	start_codon	14128853	14128855	.	-	0	transcript_id "Ledus.S3G177700.t1"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	transcript	14127048	14128855	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	stop_codon	14127045	14127047	.	-	0	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14127048	14127118	0.71	-	2	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14127048	14127118	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14127119	14127197	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14127198	14127489	0.69	-	0	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14127198	14127489	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14127490	14127575	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14127576	14127663	1	-	1	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14127576	14127663	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14127664	14127770	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14127771	14127863	1	-	1	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14127771	14127863	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14127864	14127947	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14127948	14128293	0.99	-	2	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14127948	14128293	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14128294	14128375	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14128376	14128567	1	-	2	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14128376	14128567	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	intron	14128568	14128761	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	CDS	14128762	14128855	0.87	-	0	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	exon	14128762	14128855	.	-	.	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
Ledus.S3	AUGUSTUS	start_codon	14128853	14128855	.	-	0	transcript_id "Ledus.S3G177700.t2"; gene_id "Ledus.S3G177700"
# This transcript jg660.t2 is derived from g7521.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg661.t1 is derived from g7522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3953134	3954120	.	+	.	Ledus.S2G054300
Ledus.S2	AUGUSTUS	transcript	3953134	3954120	.	+	.	transcript_id "Ledus.S2G054300.t1"; gene_id "Ledus.S2G054300"
Ledus.S2	AUGUSTUS	start_codon	3953134	3953136	.	+	0	transcript_id "Ledus.S2G054300.t1"; gene_id "Ledus.S2G054300"
Ledus.S2	AUGUSTUS	CDS	3953134	3954120	0.77	+	0	transcript_id "Ledus.S2G054300.t1"; gene_id "Ledus.S2G054300"
Ledus.S2	AUGUSTUS	exon	3953134	3954120	.	+	.	transcript_id "Ledus.S2G054300.t1"; gene_id "Ledus.S2G054300"
Ledus.S2	AUGUSTUS	stop_codon	3954121	3954123	.	+	0	transcript_id "Ledus.S2G054300.t1"; gene_id "Ledus.S2G054300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6842.t1 is derived from g4286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34599297	34603121	.	+	.	Ledus.S1G426300
Ledus.S1	AUGUSTUS	transcript	34599297	34603121	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	start_codon	34599297	34599299	.	+	0	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	CDS	34599297	34600251	0.64	+	0	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	exon	34599297	34600251	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	intron	34600252	34600338	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	CDS	34600339	34600476	1	+	2	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	exon	34600339	34600476	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	intron	34600477	34600561	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	CDS	34600562	34600755	1	+	2	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	exon	34600562	34600755	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	intron	34600756	34600910	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	CDS	34600911	34601290	0.98	+	0	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	exon	34600911	34601290	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	intron	34601291	34601494	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	CDS	34601495	34601924	1	+	1	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	exon	34601495	34601924	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	intron	34601925	34602015	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	CDS	34602016	34602199	0.58	+	0	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	exon	34602016	34602199	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	intron	34602200	34602440	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	CDS	34602441	34602479	0.89	+	2	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	exon	34602441	34602479	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	intron	34602480	34602651	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	CDS	34602652	34602722	0.88	+	2	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	exon	34602652	34602722	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	intron	34602723	34602869	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	CDS	34602870	34603121	0.56	+	0	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	exon	34602870	34603121	.	+	.	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
Ledus.S1	AUGUSTUS	stop_codon	34603122	34603124	.	+	0	transcript_id "Ledus.S1G426300.t1"; gene_id "Ledus.S1G426300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7819.t1 is derived from g12490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7145744	7146301	.	+	.	Ledus.S5G059700
Ledus.S5	AUGUSTUS	transcript	7145744	7146301	.	+	.	transcript_id "Ledus.S5G059700.t1"; gene_id "Ledus.S5G059700"
Ledus.S5	AUGUSTUS	start_codon	7145744	7145746	.	+	0	transcript_id "Ledus.S5G059700.t1"; gene_id "Ledus.S5G059700"
Ledus.S5	AUGUSTUS	CDS	7145744	7145927	0.22	+	0	transcript_id "Ledus.S5G059700.t1"; gene_id "Ledus.S5G059700"
Ledus.S5	AUGUSTUS	exon	7145744	7145927	.	+	.	transcript_id "Ledus.S5G059700.t1"; gene_id "Ledus.S5G059700"
Ledus.S5	AUGUSTUS	intron	7145928	7146035	.	+	.	transcript_id "Ledus.S5G059700.t1"; gene_id "Ledus.S5G059700"
Ledus.S5	AUGUSTUS	CDS	7146036	7146301	0.33	+	2	transcript_id "Ledus.S5G059700.t1"; gene_id "Ledus.S5G059700"
Ledus.S5	AUGUSTUS	exon	7146036	7146301	.	+	.	transcript_id "Ledus.S5G059700.t1"; gene_id "Ledus.S5G059700"
Ledus.S5	AUGUSTUS	stop_codon	7146302	7146304	.	+	0	transcript_id "Ledus.S5G059700.t1"; gene_id "Ledus.S5G059700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6533.t1 is derived from g3976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32144475	32147616	.	-	.	Ledus.S1G395400
Ledus.S1	AUGUSTUS	transcript	32144475	32147616	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	stop_codon	32144472	32144474	.	-	0	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32144475	32144574	1	-	1	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32144475	32144574	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32144575	32144657	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32144658	32144743	1	-	0	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32144658	32144743	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32144744	32144833	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32144834	32144906	1	-	1	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32144834	32144906	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32144907	32144987	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32144988	32145116	1	-	1	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32144988	32145116	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32145117	32145208	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32145209	32145357	1	-	0	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32145209	32145357	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32145358	32145445	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32145446	32145529	1	-	0	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32145446	32145529	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32145530	32145748	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32145749	32145826	1	-	0	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32145749	32145826	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32145827	32145959	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32145960	32146018	0.99	-	2	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32145960	32146018	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32146019	32146121	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32146122	32146212	0.97	-	0	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32146122	32146212	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32146213	32146303	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32146304	32146448	1	-	1	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32146304	32146448	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32146449	32146519	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32146520	32146712	1	-	2	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32146520	32146712	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32146713	32146819	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32146820	32146940	1	-	0	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32146820	32146940	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32146941	32147016	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32147017	32147107	1	-	1	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32147017	32147107	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32147108	32147212	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32147213	32147340	1	-	0	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32147213	32147340	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	intron	32147341	32147547	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	CDS	32147548	32147616	1	-	0	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	exon	32147548	32147616	.	-	.	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
Ledus.S1	AUGUSTUS	start_codon	32147614	32147616	.	-	0	transcript_id "Ledus.S1G395400.t1"; gene_id "Ledus.S1G395400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9987.t1 is derived from g11017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11753476	11754675	.	+	.	Ledus.S3G146400
Ledus.S3	AUGUSTUS	transcript	11753476	11754675	.	+	.	transcript_id "Ledus.S3G146400.t1"; gene_id "Ledus.S3G146400"
Ledus.S3	AUGUSTUS	start_codon	11753476	11753478	.	+	0	transcript_id "Ledus.S3G146400.t1"; gene_id "Ledus.S3G146400"
Ledus.S3	AUGUSTUS	CDS	11753476	11754132	0.98	+	0	transcript_id "Ledus.S3G146400.t1"; gene_id "Ledus.S3G146400"
Ledus.S3	AUGUSTUS	exon	11753476	11754132	.	+	.	transcript_id "Ledus.S3G146400.t1"; gene_id "Ledus.S3G146400"
Ledus.S3	AUGUSTUS	intron	11754133	11754234	.	+	.	transcript_id "Ledus.S3G146400.t1"; gene_id "Ledus.S3G146400"
Ledus.S3	AUGUSTUS	CDS	11754235	11754675	0.37	+	0	transcript_id "Ledus.S3G146400.t1"; gene_id "Ledus.S3G146400"
Ledus.S3	AUGUSTUS	exon	11754235	11754675	.	+	.	transcript_id "Ledus.S3G146400.t1"; gene_id "Ledus.S3G146400"
Ledus.S3	AUGUSTUS	stop_codon	11754676	11754678	.	+	0	transcript_id "Ledus.S3G146400.t1"; gene_id "Ledus.S3G146400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9861.t1 is derived from g10891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10648768	10649302	.	+	.	Ledus.S3G133800
Ledus.S3	AUGUSTUS	transcript	10648768	10649302	.	+	.	transcript_id "Ledus.S3G133800.t1"; gene_id "Ledus.S3G133800"
Ledus.S3	AUGUSTUS	start_codon	10648768	10648770	.	+	0	transcript_id "Ledus.S3G133800.t1"; gene_id "Ledus.S3G133800"
Ledus.S3	AUGUSTUS	CDS	10648768	10648794	0.81	+	0	transcript_id "Ledus.S3G133800.t1"; gene_id "Ledus.S3G133800"
Ledus.S3	AUGUSTUS	exon	10648768	10648794	.	+	.	transcript_id "Ledus.S3G133800.t1"; gene_id "Ledus.S3G133800"
Ledus.S3	AUGUSTUS	intron	10648795	10648996	.	+	.	transcript_id "Ledus.S3G133800.t1"; gene_id "Ledus.S3G133800"
Ledus.S3	AUGUSTUS	CDS	10648997	10649302	0.81	+	0	transcript_id "Ledus.S3G133800.t1"; gene_id "Ledus.S3G133800"
Ledus.S3	AUGUSTUS	exon	10648997	10649302	.	+	.	transcript_id "Ledus.S3G133800.t1"; gene_id "Ledus.S3G133800"
Ledus.S3	AUGUSTUS	stop_codon	10649303	10649305	.	+	0	transcript_id "Ledus.S3G133800.t1"; gene_id "Ledus.S3G133800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9218.t1 is derived from g10248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5458398	5459086	.	-	.	Ledus.S3G069500
Ledus.S3	AUGUSTUS	transcript	5458398	5459086	.	-	.	transcript_id "Ledus.S3G069500.t1"; gene_id "Ledus.S3G069500"
Ledus.S3	AUGUSTUS	stop_codon	5458395	5458397	.	-	0	transcript_id "Ledus.S3G069500.t1"; gene_id "Ledus.S3G069500"
Ledus.S3	AUGUSTUS	CDS	5458398	5458425	1	-	1	transcript_id "Ledus.S3G069500.t1"; gene_id "Ledus.S3G069500"
Ledus.S3	AUGUSTUS	exon	5458398	5458425	.	-	.	transcript_id "Ledus.S3G069500.t1"; gene_id "Ledus.S3G069500"
Ledus.S3	AUGUSTUS	intron	5458426	5458514	.	-	.	transcript_id "Ledus.S3G069500.t1"; gene_id "Ledus.S3G069500"
Ledus.S3	AUGUSTUS	CDS	5458515	5458653	1	-	2	transcript_id "Ledus.S3G069500.t1"; gene_id "Ledus.S3G069500"
Ledus.S3	AUGUSTUS	exon	5458515	5458653	.	-	.	transcript_id "Ledus.S3G069500.t1"; gene_id "Ledus.S3G069500"
Ledus.S3	AUGUSTUS	intron	5458654	5458752	.	-	.	transcript_id "Ledus.S3G069500.t1"; gene_id "Ledus.S3G069500"
Ledus.S3	AUGUSTUS	CDS	5458753	5459086	0.73	-	0	transcript_id "Ledus.S3G069500.t1"; gene_id "Ledus.S3G069500"
Ledus.S3	AUGUSTUS	exon	5458753	5459086	.	-	.	transcript_id "Ledus.S3G069500.t1"; gene_id "Ledus.S3G069500"
Ledus.S3	AUGUSTUS	start_codon	5459084	5459086	.	-	0	transcript_id "Ledus.S3G069500.t1"; gene_id "Ledus.S3G069500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8083.t1 is derived from g12754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9082615	9085879	.	-	.	Ledus.S5G086100
Ledus.S5	AUGUSTUS	transcript	9082615	9085879	.	-	.	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	stop_codon	9082612	9082614	.	-	0	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	CDS	9082615	9083210	1	-	2	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	exon	9082615	9083210	.	-	.	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	intron	9083211	9083299	.	-	.	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	CDS	9083300	9083722	0.98	-	2	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	exon	9083300	9083722	.	-	.	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	intron	9083723	9083800	.	-	.	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	CDS	9083801	9084249	0.99	-	1	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	exon	9083801	9084249	.	-	.	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	intron	9084250	9084463	.	-	.	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	CDS	9084464	9084633	0.97	-	0	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	exon	9084464	9084633	.	-	.	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	intron	9084634	9084738	.	-	.	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	CDS	9084739	9085092	0.98	-	0	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	exon	9084739	9085092	.	-	.	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	intron	9085093	9085384	.	-	.	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	CDS	9085385	9085879	0.97	-	0	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	exon	9085385	9085879	.	-	.	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
Ledus.S5	AUGUSTUS	start_codon	9085877	9085879	.	-	0	transcript_id "Ledus.S5G086100.t1"; gene_id "Ledus.S5G086100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3861.t1 is derived from g1297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13211036	13221307	.	-	.	Ledus.S1G128200
Ledus.S1	AUGUSTUS	transcript	13211036	13221307	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	stop_codon	13211033	13211035	.	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13211036	13211200	0.8	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13211036	13211200	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13211201	13211291	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13211292	13211448	1	-	1	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13211292	13211448	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13211449	13211529	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13211530	13211600	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13211530	13211600	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13211601	13211674	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13211675	13211826	1	-	2	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13211675	13211826	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13211827	13211922	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13211923	13212175	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13211923	13212175	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13212176	13212265	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13212266	13212334	0.99	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13212266	13212334	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13212335	13212436	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13212437	13212542	0.98	-	1	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13212437	13212542	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13212543	13212657	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13212658	13212800	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13212658	13212800	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13212801	13212941	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13212942	13213088	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13212942	13213088	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13213089	13213221	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13213222	13213272	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13213222	13213272	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13213273	13213385	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13213386	13213460	0.98	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13213386	13213460	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13213461	13213556	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13213557	13213664	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13213557	13213664	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13213665	13213750	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13213751	13213798	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13213751	13213798	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13213799	13213975	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13213976	13214137	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13213976	13214137	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13214138	13214301	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13214302	13214402	1	-	2	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13214302	13214402	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13214403	13214498	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13214499	13214646	0.81	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13214499	13214646	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13214647	13214747	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13214748	13214915	0.79	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13214748	13214915	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13214916	13215103	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13215104	13215227	1	-	1	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13215104	13215227	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13215228	13215380	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13215381	13215520	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13215381	13215520	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13215521	13215643	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13215644	13215901	0.67	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13215644	13215901	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13215902	13216002	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13216003	13216137	0.61	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13216003	13216137	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13216138	13216234	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13216235	13216390	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13216235	13216390	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13216391	13216658	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13216659	13216730	0.99	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13216659	13216730	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13216731	13216867	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13216868	13217118	0.99	-	2	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13216868	13217118	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13217119	13217351	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13217352	13217465	0.99	-	2	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13217352	13217465	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13217466	13217660	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13217661	13217863	0.97	-	1	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13217661	13217863	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13217864	13217964	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13217965	13218046	1	-	2	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13217965	13218046	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13218047	13218216	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13218217	13218351	1	-	2	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13218217	13218351	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13218352	13218514	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13218515	13218671	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13218515	13218671	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13218672	13218759	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13218760	13219074	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13218760	13219074	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13219075	13219202	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13219203	13219410	1	-	1	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13219203	13219410	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13219411	13219696	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13219697	13219874	0.35	-	2	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13219697	13219874	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13219875	13220021	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13220022	13220190	0.38	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13220022	13220190	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13220191	13220353	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13220354	13220448	1	-	2	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13220354	13220448	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13220449	13220605	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13220606	13220702	1	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13220606	13220702	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13220703	13221142	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13221143	13221307	0.57	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13221143	13221307	.	-	.	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	start_codon	13221305	13221307	.	-	0	transcript_id "Ledus.S1G128200.t1"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	transcript	13211036	13221307	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	stop_codon	13211033	13211035	.	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13211036	13211200	0.73	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13211036	13211200	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13211201	13211291	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13211292	13211448	1	-	1	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13211292	13211448	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13211449	13211529	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13211530	13211600	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13211530	13211600	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13211601	13211674	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13211675	13211826	1	-	2	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13211675	13211826	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13211827	13211922	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13211923	13212175	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13211923	13212175	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13212176	13212265	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13212266	13212334	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13212266	13212334	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13212335	13212436	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13212437	13212542	0.99	-	1	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13212437	13212542	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13212543	13212657	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13212658	13212800	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13212658	13212800	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13212801	13212941	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13212942	13213088	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13212942	13213088	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13213089	13213221	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13213222	13213272	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13213222	13213272	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13213273	13213385	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13213386	13213460	0.97	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13213386	13213460	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13213461	13213556	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13213557	13213664	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13213557	13213664	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13213665	13213750	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13213751	13213798	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13213751	13213798	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13213799	13213975	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13213976	13214137	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13213976	13214137	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13214138	13214301	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13214302	13214402	1	-	2	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13214302	13214402	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13214403	13214498	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13214499	13214646	0.68	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13214499	13214646	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13214647	13214747	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13214748	13214915	0.66	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13214748	13214915	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13214916	13215103	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13215104	13215227	1	-	1	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13215104	13215227	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13215228	13215380	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13215381	13215520	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13215381	13215520	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13215521	13215643	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13215644	13215901	0.79	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13215644	13215901	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13215902	13216002	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13216003	13216137	0.76	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13216003	13216137	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13216138	13216234	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13216235	13216390	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13216235	13216390	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13216391	13216658	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13216659	13216730	0.98	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13216659	13216730	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13216731	13216867	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13216868	13217118	1	-	2	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13216868	13217118	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13217119	13217351	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13217352	13217465	1	-	2	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13217352	13217465	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13217466	13217660	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13217661	13217863	0.99	-	1	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13217661	13217863	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13217864	13217964	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13217965	13218046	0.99	-	2	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13217965	13218046	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13218047	13218216	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13218217	13218296	0.8	-	1	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13218217	13218296	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13218297	13218415	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13218416	13218455	0.93	-	2	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13218416	13218455	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13218456	13218538	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13218539	13218671	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13218539	13218671	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13218672	13218759	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13218760	13219074	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13218760	13219074	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13219075	13219202	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13219203	13219410	1	-	1	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13219203	13219410	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13219411	13219696	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13219697	13219874	0.31	-	2	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13219697	13219874	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13219875	13220021	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13220022	13220190	0.43	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13220022	13220190	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13220191	13220353	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13220354	13220448	1	-	2	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13220354	13220448	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13220449	13220605	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13220606	13220702	1	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13220606	13220702	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	intron	13220703	13221142	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	CDS	13221143	13221307	0.47	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	exon	13221143	13221307	.	-	.	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
Ledus.S1	AUGUSTUS	start_codon	13221305	13221307	.	-	0	transcript_id "Ledus.S1G128200.t2"; gene_id "Ledus.S1G128200"
# This transcript jg7703.t2 is derived from g12374.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7704.t1 is derived from g12375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5310781	5314958	.	+	.	Ledus.S5G048200
Ledus.S5	AUGUSTUS	transcript	5310781	5314958	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	start_codon	5310781	5310783	.	+	0	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	CDS	5310781	5311036	0.76	+	0	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	exon	5310781	5311036	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	intron	5311037	5311152	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	CDS	5311153	5311230	0.92	+	2	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	exon	5311153	5311230	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	intron	5311231	5311331	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	CDS	5311332	5311957	0.92	+	2	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	exon	5311332	5311957	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	intron	5311958	5312099	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	CDS	5312100	5312156	0.53	+	0	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	exon	5312100	5312156	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	intron	5312157	5312444	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	CDS	5312445	5312744	0.28	+	0	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	exon	5312445	5312744	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	intron	5312745	5312895	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	CDS	5312896	5313056	1	+	0	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	exon	5312896	5313056	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	intron	5313057	5313300	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	CDS	5313301	5313509	1	+	1	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	exon	5313301	5313509	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	intron	5313510	5313625	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	CDS	5313626	5313759	1	+	2	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	exon	5313626	5313759	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	intron	5313760	5313904	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	CDS	5313905	5314302	0.99	+	0	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	exon	5313905	5314302	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	intron	5314303	5314427	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	CDS	5314428	5314531	0.98	+	1	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	exon	5314428	5314531	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	intron	5314532	5314759	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	CDS	5314760	5314814	1	+	2	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	exon	5314760	5314814	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	intron	5314815	5314906	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	CDS	5314907	5314958	0.99	+	1	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	exon	5314907	5314958	.	+	.	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
Ledus.S5	AUGUSTUS	stop_codon	5314959	5314961	.	+	0	transcript_id "Ledus.S5G048200.t1"; gene_id "Ledus.S5G048200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7349.t1 is derived from g12020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1345801	1346332	.	+	.	Ledus.S5G012700
Ledus.S5	AUGUSTUS	transcript	1345801	1346332	.	+	.	transcript_id "Ledus.S5G012700.t1"; gene_id "Ledus.S5G012700"
Ledus.S5	AUGUSTUS	start_codon	1345801	1345803	.	+	0	transcript_id "Ledus.S5G012700.t1"; gene_id "Ledus.S5G012700"
Ledus.S5	AUGUSTUS	CDS	1345801	1345826	0.85	+	0	transcript_id "Ledus.S5G012700.t1"; gene_id "Ledus.S5G012700"
Ledus.S5	AUGUSTUS	exon	1345801	1345826	.	+	.	transcript_id "Ledus.S5G012700.t1"; gene_id "Ledus.S5G012700"
Ledus.S5	AUGUSTUS	intron	1345827	1345941	.	+	.	transcript_id "Ledus.S5G012700.t1"; gene_id "Ledus.S5G012700"
Ledus.S5	AUGUSTUS	CDS	1345942	1346332	0.84	+	1	transcript_id "Ledus.S5G012700.t1"; gene_id "Ledus.S5G012700"
Ledus.S5	AUGUSTUS	exon	1345942	1346332	.	+	.	transcript_id "Ledus.S5G012700.t1"; gene_id "Ledus.S5G012700"
Ledus.S5	AUGUSTUS	stop_codon	1346333	1346335	.	+	0	transcript_id "Ledus.S5G012700.t1"; gene_id "Ledus.S5G012700"
# This transcript jg7045.t2 is derived from g6576.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7045.t3 is derived from g6576.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7046.t1 is derived from g6577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1011826	1014351	.	+	.	Ledus.C7G010700
Ledus.C7	AUGUSTUS	transcript	1011826	1014351	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	start_codon	1011826	1011828	.	+	0	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	CDS	1011826	1012018	0.67	+	0	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	exon	1011826	1012018	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	intron	1012019	1012207	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	CDS	1012208	1012289	1	+	2	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	exon	1012208	1012289	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	intron	1012290	1012555	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	CDS	1012556	1012655	1	+	1	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	exon	1012556	1012655	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	intron	1012656	1012834	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	CDS	1012835	1012930	1	+	0	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	exon	1012835	1012930	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	intron	1012931	1013084	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	CDS	1013085	1013135	1	+	0	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	exon	1013085	1013135	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	intron	1013136	1013253	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	CDS	1013254	1013319	1	+	0	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	exon	1013254	1013319	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	intron	1013320	1013409	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	CDS	1013410	1013511	1	+	0	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	exon	1013410	1013511	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	intron	1013512	1013713	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	CDS	1013714	1013782	1	+	0	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	exon	1013714	1013782	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	intron	1013783	1013920	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	CDS	1013921	1014004	1	+	0	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	exon	1013921	1014004	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	intron	1014005	1014106	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	CDS	1014107	1014202	1	+	0	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	exon	1014107	1014202	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	intron	1014203	1014297	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	CDS	1014298	1014351	0.59	+	0	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	exon	1014298	1014351	.	+	.	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
Ledus.C7	AUGUSTUS	stop_codon	1014352	1014354	.	+	0	transcript_id "Ledus.C7G010700.t1"; gene_id "Ledus.C7G010700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9277.t1 is derived from g10307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5752986	5753374	.	-	.	Ledus.S3G075400
Ledus.S3	AUGUSTUS	transcript	5752986	5753374	.	-	.	transcript_id "Ledus.S3G075400.t1"; gene_id "Ledus.S3G075400"
Ledus.S3	AUGUSTUS	stop_codon	5752983	5752985	.	-	0	transcript_id "Ledus.S3G075400.t1"; gene_id "Ledus.S3G075400"
Ledus.S3	AUGUSTUS	CDS	5752986	5753003	0.99	-	0	transcript_id "Ledus.S3G075400.t1"; gene_id "Ledus.S3G075400"
Ledus.S3	AUGUSTUS	exon	5752986	5753003	.	-	.	transcript_id "Ledus.S3G075400.t1"; gene_id "Ledus.S3G075400"
Ledus.S3	AUGUSTUS	intron	5753004	5753155	.	-	.	transcript_id "Ledus.S3G075400.t1"; gene_id "Ledus.S3G075400"
Ledus.S3	AUGUSTUS	CDS	5753156	5753374	0.77	-	0	transcript_id "Ledus.S3G075400.t1"; gene_id "Ledus.S3G075400"
Ledus.S3	AUGUSTUS	exon	5753156	5753374	.	-	.	transcript_id "Ledus.S3G075400.t1"; gene_id "Ledus.S3G075400"
Ledus.S3	AUGUSTUS	start_codon	5753372	5753374	.	-	0	transcript_id "Ledus.S3G075400.t1"; gene_id "Ledus.S3G075400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8200.t1 is derived from g12871.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9814381	9815825	.	-	.	Ledus.S5G097800
Ledus.S5	AUGUSTUS	transcript	9814381	9815825	.	-	.	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	stop_codon	9814378	9814380	.	-	0	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	CDS	9814381	9814395	0.98	-	0	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	exon	9814381	9814395	.	-	.	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	intron	9814396	9814486	.	-	.	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	CDS	9814487	9814615	1	-	0	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	exon	9814487	9814615	.	-	.	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	intron	9814616	9814690	.	-	.	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	CDS	9814691	9814890	1	-	2	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	exon	9814691	9814890	.	-	.	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	intron	9814891	9815064	.	-	.	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	CDS	9815065	9815323	1	-	0	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	exon	9815065	9815323	.	-	.	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	intron	9815324	9815414	.	-	.	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	CDS	9815415	9815455	0.9	-	2	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	exon	9815415	9815455	.	-	.	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	intron	9815456	9815773	.	-	.	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	CDS	9815774	9815825	0.92	-	0	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	exon	9815774	9815825	.	-	.	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
Ledus.S5	AUGUSTUS	start_codon	9815823	9815825	.	-	0	transcript_id "Ledus.S5G097800.t1"; gene_id "Ledus.S5G097800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5046.t1 is derived from g2485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21300300	21300866	.	-	.	Ledus.S1G246700
Ledus.S1	AUGUSTUS	transcript	21300300	21300866	.	-	.	transcript_id "Ledus.S1G246700.t1"; gene_id "Ledus.S1G246700"
Ledus.S1	AUGUSTUS	stop_codon	21300297	21300299	.	-	0	transcript_id "Ledus.S1G246700.t1"; gene_id "Ledus.S1G246700"
Ledus.S1	AUGUSTUS	CDS	21300300	21300335	0.96	-	0	transcript_id "Ledus.S1G246700.t1"; gene_id "Ledus.S1G246700"
Ledus.S1	AUGUSTUS	exon	21300300	21300335	.	-	.	transcript_id "Ledus.S1G246700.t1"; gene_id "Ledus.S1G246700"
Ledus.S1	AUGUSTUS	intron	21300336	21300430	.	-	.	transcript_id "Ledus.S1G246700.t1"; gene_id "Ledus.S1G246700"
Ledus.S1	AUGUSTUS	CDS	21300431	21300591	1	-	2	transcript_id "Ledus.S1G246700.t1"; gene_id "Ledus.S1G246700"
Ledus.S1	AUGUSTUS	exon	21300431	21300591	.	-	.	transcript_id "Ledus.S1G246700.t1"; gene_id "Ledus.S1G246700"
Ledus.S1	AUGUSTUS	intron	21300592	21300688	.	-	.	transcript_id "Ledus.S1G246700.t1"; gene_id "Ledus.S1G246700"
Ledus.S1	AUGUSTUS	CDS	21300689	21300866	0.46	-	0	transcript_id "Ledus.S1G246700.t1"; gene_id "Ledus.S1G246700"
Ledus.S1	AUGUSTUS	exon	21300689	21300866	.	-	.	transcript_id "Ledus.S1G246700.t1"; gene_id "Ledus.S1G246700"
Ledus.S1	AUGUSTUS	start_codon	21300864	21300866	.	-	0	transcript_id "Ledus.S1G246700.t1"; gene_id "Ledus.S1G246700"
# This transcript jg12381.t2 is derived from g6002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12382.t1 is derived from g6003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11562200	11563498	.	-	.	Ledus.S4G153800
Ledus.S4	AUGUSTUS	transcript	11562200	11563498	.	-	.	transcript_id "Ledus.S4G153800.t1"; gene_id "Ledus.S4G153800"
Ledus.S4	AUGUSTUS	stop_codon	11562197	11562199	.	-	0	transcript_id "Ledus.S4G153800.t1"; gene_id "Ledus.S4G153800"
Ledus.S4	AUGUSTUS	CDS	11562200	11563498	0.98	-	0	transcript_id "Ledus.S4G153800.t1"; gene_id "Ledus.S4G153800"
Ledus.S4	AUGUSTUS	exon	11562200	11563498	.	-	.	transcript_id "Ledus.S4G153800.t1"; gene_id "Ledus.S4G153800"
Ledus.S4	AUGUSTUS	start_codon	11563496	11563498	.	-	0	transcript_id "Ledus.S4G153800.t1"; gene_id "Ledus.S4G153800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5211.t1 is derived from g2650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22480139	22481048	.	-	.	Ledus.S1G263200
Ledus.S1	AUGUSTUS	transcript	22480139	22481048	.	-	.	transcript_id "Ledus.S1G263200.t1"; gene_id "Ledus.S1G263200"
Ledus.S1	AUGUSTUS	stop_codon	22480136	22480138	.	-	0	transcript_id "Ledus.S1G263200.t1"; gene_id "Ledus.S1G263200"
Ledus.S1	AUGUSTUS	CDS	22480139	22480213	0.89	-	0	transcript_id "Ledus.S1G263200.t1"; gene_id "Ledus.S1G263200"
Ledus.S1	AUGUSTUS	exon	22480139	22480213	.	-	.	transcript_id "Ledus.S1G263200.t1"; gene_id "Ledus.S1G263200"
Ledus.S1	AUGUSTUS	intron	22480214	22480367	.	-	.	transcript_id "Ledus.S1G263200.t1"; gene_id "Ledus.S1G263200"
Ledus.S1	AUGUSTUS	CDS	22480368	22481048	0.87	-	0	transcript_id "Ledus.S1G263200.t1"; gene_id "Ledus.S1G263200"
Ledus.S1	AUGUSTUS	exon	22480368	22481048	.	-	.	transcript_id "Ledus.S1G263200.t1"; gene_id "Ledus.S1G263200"
Ledus.S1	AUGUSTUS	start_codon	22481046	22481048	.	-	0	transcript_id "Ledus.S1G263200.t1"; gene_id "Ledus.S1G263200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9838.t1 is derived from g10868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10422686	10423874	.	+	.	Ledus.S3G131500
Ledus.S3	AUGUSTUS	transcript	10422686	10423874	.	+	.	transcript_id "Ledus.S3G131500.t1"; gene_id "Ledus.S3G131500"
Ledus.S3	AUGUSTUS	start_codon	10422686	10422688	.	+	0	transcript_id "Ledus.S3G131500.t1"; gene_id "Ledus.S3G131500"
Ledus.S3	AUGUSTUS	CDS	10422686	10422899	0.55	+	0	transcript_id "Ledus.S3G131500.t1"; gene_id "Ledus.S3G131500"
Ledus.S3	AUGUSTUS	exon	10422686	10422899	.	+	.	transcript_id "Ledus.S3G131500.t1"; gene_id "Ledus.S3G131500"
Ledus.S3	AUGUSTUS	intron	10422900	10422979	.	+	.	transcript_id "Ledus.S3G131500.t1"; gene_id "Ledus.S3G131500"
Ledus.S3	AUGUSTUS	CDS	10422980	10423177	0.78	+	2	transcript_id "Ledus.S3G131500.t1"; gene_id "Ledus.S3G131500"
Ledus.S3	AUGUSTUS	exon	10422980	10423177	.	+	.	transcript_id "Ledus.S3G131500.t1"; gene_id "Ledus.S3G131500"
Ledus.S3	AUGUSTUS	intron	10423178	10423440	.	+	.	transcript_id "Ledus.S3G131500.t1"; gene_id "Ledus.S3G131500"
Ledus.S3	AUGUSTUS	CDS	10423441	10423874	0.81	+	2	transcript_id "Ledus.S3G131500.t1"; gene_id "Ledus.S3G131500"
Ledus.S3	AUGUSTUS	exon	10423441	10423874	.	+	.	transcript_id "Ledus.S3G131500.t1"; gene_id "Ledus.S3G131500"
Ledus.S3	AUGUSTUS	stop_codon	10423875	10423877	.	+	0	transcript_id "Ledus.S3G131500.t1"; gene_id "Ledus.S3G131500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1202.t1 is derived from g8063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8570064	8577206	.	+	.	Ledus.S2G108400
Ledus.S2	AUGUSTUS	transcript	8570064	8577206	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	start_codon	8570064	8570066	.	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8570064	8570066	0.35	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8570064	8570066	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8570067	8570148	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8570149	8570349	0.74	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8570149	8570349	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8570350	8570435	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8570436	8570756	0.61	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8570436	8570756	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8570757	8570862	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8570863	8571123	0.98	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8570863	8571123	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8571124	8571253	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8571254	8571310	1	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8571254	8571310	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8571311	8571390	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8571391	8571499	1	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8571391	8571499	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8571500	8571656	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8571657	8571826	1	+	2	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8571657	8571826	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8571827	8572000	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8572001	8572108	1	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8572001	8572108	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8572109	8572301	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8572302	8572403	1	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8572302	8572403	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8572404	8572534	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8572535	8572735	1	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8572535	8572735	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8572736	8572819	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8572820	8572930	0.99	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8572820	8572930	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8572931	8573045	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8573046	8573113	1	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8573046	8573113	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8573114	8573193	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8573194	8573596	1	+	1	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8573194	8573596	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8573597	8573732	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8573733	8573888	1	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8573733	8573888	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8573889	8574105	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8574106	8574216	1	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8574106	8574216	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8574217	8574343	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8574344	8574397	1	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8574344	8574397	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8574398	8574603	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8574604	8574711	1	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8574604	8574711	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8574712	8574798	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8574799	8574933	0.72	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8574799	8574933	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8574934	8575060	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8575061	8575179	0.97	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8575061	8575179	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8575180	8575288	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8575289	8575442	0.84	+	1	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8575289	8575442	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8575443	8575536	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8575537	8576005	1	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8575537	8576005	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8576006	8576114	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8576115	8576329	1	+	2	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8576115	8576329	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8576330	8576445	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8576446	8576684	1	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8576446	8576684	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8576685	8576774	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8576775	8576901	1	+	1	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8576775	8576901	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	intron	8576902	8576993	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	CDS	8576994	8577206	0.94	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	exon	8576994	8577206	.	+	.	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
Ledus.S2	AUGUSTUS	stop_codon	8577207	8577209	.	+	0	transcript_id "Ledus.S2G108400.t1"; gene_id "Ledus.S2G108400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6661.t1 is derived from g4104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32947668	32949127	.	-	.	Ledus.S1G408200
Ledus.S1	AUGUSTUS	transcript	32947668	32949127	.	-	.	transcript_id "Ledus.S1G408200.t1"; gene_id "Ledus.S1G408200"
Ledus.S1	AUGUSTUS	stop_codon	32947665	32947667	.	-	0	transcript_id "Ledus.S1G408200.t1"; gene_id "Ledus.S1G408200"
Ledus.S1	AUGUSTUS	CDS	32947668	32948690	0.95	-	0	transcript_id "Ledus.S1G408200.t1"; gene_id "Ledus.S1G408200"
Ledus.S1	AUGUSTUS	exon	32947668	32948690	.	-	.	transcript_id "Ledus.S1G408200.t1"; gene_id "Ledus.S1G408200"
Ledus.S1	AUGUSTUS	intron	32948691	32948767	.	-	.	transcript_id "Ledus.S1G408200.t1"; gene_id "Ledus.S1G408200"
Ledus.S1	AUGUSTUS	CDS	32948768	32949127	1	-	0	transcript_id "Ledus.S1G408200.t1"; gene_id "Ledus.S1G408200"
Ledus.S1	AUGUSTUS	exon	32948768	32949127	.	-	.	transcript_id "Ledus.S1G408200.t1"; gene_id "Ledus.S1G408200"
Ledus.S1	AUGUSTUS	start_codon	32949125	32949127	.	-	0	transcript_id "Ledus.S1G408200.t1"; gene_id "Ledus.S1G408200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7421.t1 is derived from g12092.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2323340	2323966	.	+	.	Ledus.S5G019900
Ledus.S5	AUGUSTUS	transcript	2323340	2323966	.	+	.	transcript_id "Ledus.S5G019900.t1"; gene_id "Ledus.S5G019900"
Ledus.S5	AUGUSTUS	start_codon	2323340	2323342	.	+	0	transcript_id "Ledus.S5G019900.t1"; gene_id "Ledus.S5G019900"
Ledus.S5	AUGUSTUS	CDS	2323340	2323966	0.4	+	0	transcript_id "Ledus.S5G019900.t1"; gene_id "Ledus.S5G019900"
Ledus.S5	AUGUSTUS	exon	2323340	2323966	.	+	.	transcript_id "Ledus.S5G019900.t1"; gene_id "Ledus.S5G019900"
Ledus.S5	AUGUSTUS	stop_codon	2323967	2323969	.	+	0	transcript_id "Ledus.S5G019900.t1"; gene_id "Ledus.S5G019900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3339.t1 is derived from g774.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7566918	7569672	.	+	.	Ledus.S1G076000
Ledus.S1	AUGUSTUS	transcript	7566918	7569672	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	start_codon	7566918	7566920	.	+	0	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	CDS	7566918	7567013	0.88	+	0	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	exon	7566918	7567013	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	intron	7567014	7567216	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	CDS	7567217	7567252	0.83	+	0	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	exon	7567217	7567252	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	intron	7567253	7567351	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	CDS	7567352	7567994	1	+	0	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	exon	7567352	7567994	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	intron	7567995	7568082	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	CDS	7568083	7568840	1	+	2	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	exon	7568083	7568840	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	intron	7568841	7568936	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	CDS	7568937	7569081	1	+	0	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	exon	7568937	7569081	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	intron	7569082	7569252	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	CDS	7569253	7569353	1	+	2	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	exon	7569253	7569353	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	intron	7569354	7569528	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	CDS	7569529	7569672	0.93	+	0	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	exon	7569529	7569672	.	+	.	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
Ledus.S1	AUGUSTUS	stop_codon	7569673	7569675	.	+	0	transcript_id "Ledus.S1G076000.t1"; gene_id "Ledus.S1G076000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12183.t1 is derived from g5802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10192119	10192730	.	+	.	Ledus.S4G133900
Ledus.S4	AUGUSTUS	transcript	10192119	10192730	.	+	.	transcript_id "Ledus.S4G133900.t1"; gene_id "Ledus.S4G133900"
Ledus.S4	AUGUSTUS	start_codon	10192119	10192121	.	+	0	transcript_id "Ledus.S4G133900.t1"; gene_id "Ledus.S4G133900"
Ledus.S4	AUGUSTUS	CDS	10192119	10192730	0.58	+	0	transcript_id "Ledus.S4G133900.t1"; gene_id "Ledus.S4G133900"
Ledus.S4	AUGUSTUS	exon	10192119	10192730	.	+	.	transcript_id "Ledus.S4G133900.t1"; gene_id "Ledus.S4G133900"
Ledus.S4	AUGUSTUS	stop_codon	10192731	10192733	.	+	0	transcript_id "Ledus.S4G133900.t1"; gene_id "Ledus.S4G133900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2365.t1 is derived from g9228.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17594102	17594974	.	+	.	Ledus.S2G224700
Ledus.S2	AUGUSTUS	transcript	17594102	17594974	.	+	.	transcript_id "Ledus.S2G224700.t1"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	start_codon	17594102	17594104	.	+	0	transcript_id "Ledus.S2G224700.t1"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	CDS	17594102	17594482	0.92	+	0	transcript_id "Ledus.S2G224700.t1"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	exon	17594102	17594482	.	+	.	transcript_id "Ledus.S2G224700.t1"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	intron	17594483	17594545	.	+	.	transcript_id "Ledus.S2G224700.t1"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	CDS	17594546	17594974	0.64	+	0	transcript_id "Ledus.S2G224700.t1"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	exon	17594546	17594974	.	+	.	transcript_id "Ledus.S2G224700.t1"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	stop_codon	17594975	17594977	.	+	0	transcript_id "Ledus.S2G224700.t1"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	transcript	17594102	17594974	.	+	.	transcript_id "Ledus.S2G224700.t2"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	start_codon	17594102	17594104	.	+	0	transcript_id "Ledus.S2G224700.t2"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	CDS	17594102	17594461	0.81	+	0	transcript_id "Ledus.S2G224700.t2"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	exon	17594102	17594461	.	+	.	transcript_id "Ledus.S2G224700.t2"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	intron	17594462	17594545	.	+	.	transcript_id "Ledus.S2G224700.t2"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	CDS	17594546	17594974	0.66	+	0	transcript_id "Ledus.S2G224700.t2"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	exon	17594546	17594974	.	+	.	transcript_id "Ledus.S2G224700.t2"; gene_id "Ledus.S2G224700"
Ledus.S2	AUGUSTUS	stop_codon	17594975	17594977	.	+	0	transcript_id "Ledus.S2G224700.t2"; gene_id "Ledus.S2G224700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6082.t1 is derived from g3525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28843169	28846001	.	+	.	Ledus.S1G350300
Ledus.S1	AUGUSTUS	transcript	28843169	28846001	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	start_codon	28843169	28843171	.	+	0	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	CDS	28843169	28843384	0.79	+	0	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	exon	28843169	28843384	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	intron	28843385	28843463	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	CDS	28843464	28843872	1	+	0	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	exon	28843464	28843872	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	intron	28843873	28843945	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	CDS	28843946	28844340	0.45	+	2	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	exon	28843946	28844340	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	intron	28844341	28844521	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	CDS	28844522	28844597	0.5	+	0	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	exon	28844522	28844597	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	intron	28844598	28844668	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	CDS	28844669	28844756	1	+	2	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	exon	28844669	28844756	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	intron	28844757	28844836	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	CDS	28844837	28844960	1	+	1	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	exon	28844837	28844960	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	intron	28844961	28845029	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	CDS	28845030	28845121	1	+	0	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	exon	28845030	28845121	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	intron	28845122	28845223	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	CDS	28845224	28845266	1	+	1	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	exon	28845224	28845266	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	intron	28845267	28845363	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	CDS	28845364	28845424	1	+	0	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	exon	28845364	28845424	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	intron	28845425	28845496	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	CDS	28845497	28845586	1	+	2	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	exon	28845497	28845586	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	intron	28845587	28845683	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	CDS	28845684	28845787	1	+	2	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	exon	28845684	28845787	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	intron	28845788	28845881	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	CDS	28845882	28846001	1	+	0	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	exon	28845882	28846001	.	+	.	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
Ledus.S1	AUGUSTUS	stop_codon	28846002	28846004	.	+	0	transcript_id "Ledus.S1G350300.t1"; gene_id "Ledus.S1G350300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13138.t1 is derived from g6948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6958093	6958734	.	-	.	Ledus.S6G020000
Ledus.S6	AUGUSTUS	transcript	6958093	6958734	.	-	.	transcript_id "Ledus.S6G020000.t1"; gene_id "Ledus.S6G020000"
Ledus.S6	AUGUSTUS	stop_codon	6958090	6958092	.	-	0	transcript_id "Ledus.S6G020000.t1"; gene_id "Ledus.S6G020000"
Ledus.S6	AUGUSTUS	CDS	6958093	6958734	0.33	-	0	transcript_id "Ledus.S6G020000.t1"; gene_id "Ledus.S6G020000"
Ledus.S6	AUGUSTUS	exon	6958093	6958734	.	-	.	transcript_id "Ledus.S6G020000.t1"; gene_id "Ledus.S6G020000"
Ledus.S6	AUGUSTUS	start_codon	6958732	6958734	.	-	0	transcript_id "Ledus.S6G020000.t1"; gene_id "Ledus.S6G020000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12926.t1 is derived from g4418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	359447	361090	.	+	.	Ledus.C9G003400
Ledus.C9	AUGUSTUS	transcript	359447	361090	.	+	.	transcript_id "Ledus.C9G003400.t1"; gene_id "Ledus.C9G003400"
Ledus.C9	AUGUSTUS	start_codon	359447	359449	.	+	0	transcript_id "Ledus.C9G003400.t1"; gene_id "Ledus.C9G003400"
Ledus.C9	AUGUSTUS	CDS	359447	361090	1	+	0	transcript_id "Ledus.C9G003400.t1"; gene_id "Ledus.C9G003400"
Ledus.C9	AUGUSTUS	exon	359447	361090	.	+	.	transcript_id "Ledus.C9G003400.t1"; gene_id "Ledus.C9G003400"
Ledus.C9	AUGUSTUS	stop_codon	361091	361093	.	+	0	transcript_id "Ledus.C9G003400.t1"; gene_id "Ledus.C9G003400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3152.t1 is derived from g587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6353426	6355280	.	+	.	Ledus.S1G057300
Ledus.S1	AUGUSTUS	transcript	6353426	6355280	.	+	.	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	start_codon	6353426	6353428	.	+	0	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	CDS	6353426	6354121	0.98	+	0	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	exon	6353426	6354121	.	+	.	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	intron	6354122	6354272	.	+	.	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	CDS	6354273	6354479	0.98	+	0	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	exon	6354273	6354479	.	+	.	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	intron	6354480	6354582	.	+	.	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	CDS	6354583	6354820	1	+	0	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	exon	6354583	6354820	.	+	.	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	intron	6354821	6354912	.	+	.	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	CDS	6354913	6355280	0.96	+	2	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	exon	6354913	6355280	.	+	.	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
Ledus.S1	AUGUSTUS	stop_codon	6355281	6355283	.	+	0	transcript_id "Ledus.S1G057300.t1"; gene_id "Ledus.S1G057300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9470.t1 is derived from g10500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7179998	7181769	.	-	.	Ledus.S3G094700
Ledus.S3	AUGUSTUS	transcript	7179998	7181769	.	-	.	transcript_id "Ledus.S3G094700.t1"; gene_id "Ledus.S3G094700"
Ledus.S3	AUGUSTUS	stop_codon	7179995	7179997	.	-	0	transcript_id "Ledus.S3G094700.t1"; gene_id "Ledus.S3G094700"
Ledus.S3	AUGUSTUS	CDS	7179998	7181013	0.75	-	2	transcript_id "Ledus.S3G094700.t1"; gene_id "Ledus.S3G094700"
Ledus.S3	AUGUSTUS	exon	7179998	7181013	.	-	.	transcript_id "Ledus.S3G094700.t1"; gene_id "Ledus.S3G094700"
Ledus.S3	AUGUSTUS	intron	7181014	7181180	.	-	.	transcript_id "Ledus.S3G094700.t1"; gene_id "Ledus.S3G094700"
Ledus.S3	AUGUSTUS	CDS	7181181	7181769	0.61	-	0	transcript_id "Ledus.S3G094700.t1"; gene_id "Ledus.S3G094700"
Ledus.S3	AUGUSTUS	exon	7181181	7181769	.	-	.	transcript_id "Ledus.S3G094700.t1"; gene_id "Ledus.S3G094700"
Ledus.S3	AUGUSTUS	start_codon	7181767	7181769	.	-	0	transcript_id "Ledus.S3G094700.t1"; gene_id "Ledus.S3G094700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg917.t1 is derived from g7778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6169964	6170903	.	+	.	Ledus.S2G079900
Ledus.S2	AUGUSTUS	transcript	6169964	6170903	.	+	.	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	start_codon	6169964	6169966	.	+	0	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	CDS	6169964	6170176	0.79	+	0	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	exon	6169964	6170176	.	+	.	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	intron	6170177	6170289	.	+	.	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	CDS	6170290	6170475	1	+	0	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	exon	6170290	6170475	.	+	.	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	intron	6170476	6170566	.	+	.	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	CDS	6170567	6170721	0.93	+	0	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	exon	6170567	6170721	.	+	.	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	intron	6170722	6170803	.	+	.	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	CDS	6170804	6170903	0.93	+	1	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	exon	6170804	6170903	.	+	.	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
Ledus.S2	AUGUSTUS	stop_codon	6170904	6170906	.	+	0	transcript_id "Ledus.S2G079900.t1"; gene_id "Ledus.S2G079900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg706.t1 is derived from g7567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4336136	4337207	.	+	.	Ledus.S2G058800
Ledus.S2	AUGUSTUS	transcript	4336136	4337207	.	+	.	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	start_codon	4336136	4336138	.	+	0	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	CDS	4336136	4336459	0.27	+	0	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	exon	4336136	4336459	.	+	.	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	intron	4336460	4336559	.	+	.	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	CDS	4336560	4336651	0.82	+	0	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	exon	4336560	4336651	.	+	.	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	intron	4336652	4336768	.	+	.	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	CDS	4336769	4336826	1	+	1	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	exon	4336769	4336826	.	+	.	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	intron	4336827	4336914	.	+	.	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	CDS	4336915	4336980	1	+	0	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	exon	4336915	4336980	.	+	.	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	intron	4336981	4337075	.	+	.	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	CDS	4337076	4337207	0.94	+	0	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	exon	4337076	4337207	.	+	.	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
Ledus.S2	AUGUSTUS	stop_codon	4337208	4337210	.	+	0	transcript_id "Ledus.S2G058800.t1"; gene_id "Ledus.S2G058800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1462.t1 is derived from g8323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10333122	10338709	.	-	.	Ledus.S2G134400
Ledus.S2	AUGUSTUS	transcript	10333122	10338709	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	stop_codon	10333119	10333121	.	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10333122	10333227	1	-	1	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10333122	10333227	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10333228	10333312	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10333313	10333488	1	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10333313	10333488	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10333489	10333612	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10333613	10333691	1	-	1	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10333613	10333691	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10333692	10334289	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10334290	10334492	1	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10334290	10334492	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10334493	10334616	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10334617	10334898	0.98	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10334617	10334898	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10334899	10335013	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10335014	10335157	0.99	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10335014	10335157	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10335158	10335228	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10335229	10335587	0.97	-	2	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10335229	10335587	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10335588	10335894	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10335895	10335988	0.98	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10335895	10335988	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10335989	10336072	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10336073	10336174	1	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10336073	10336174	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10336175	10336338	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10336339	10336404	1	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10336339	10336404	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10336405	10336612	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10336613	10336678	1	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10336613	10336678	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10336679	10336759	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10336760	10336819	1	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10336760	10336819	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10336820	10336906	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10336907	10336978	1	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10336907	10336978	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10336979	10337058	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10337059	10337169	1	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10337059	10337169	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10337170	10337253	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10337254	10337331	1	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10337254	10337331	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10337332	10337428	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10337429	10337655	1	-	2	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10337429	10337655	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10337656	10337763	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10337764	10337845	1	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10337764	10337845	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	intron	10337846	10338262	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	CDS	10338263	10338709	0.89	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	exon	10338263	10338709	.	-	.	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
Ledus.S2	AUGUSTUS	start_codon	10338707	10338709	.	-	0	transcript_id "Ledus.S2G134400.t1"; gene_id "Ledus.S2G134400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10289.t1 is derived from g11319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14093460	14097844	.	-	.	Ledus.S3G176600
Ledus.S3	AUGUSTUS	transcript	14093460	14097844	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	stop_codon	14093457	14093459	.	-	0	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14093460	14094201	0.99	-	1	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14093460	14094201	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14094202	14094591	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14094592	14094620	0.99	-	0	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14094592	14094620	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14094621	14095874	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14095875	14096003	0.84	-	0	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14095875	14096003	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14096004	14096224	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14096225	14096296	1	-	0	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14096225	14096296	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14096297	14096369	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14096370	14096468	1	-	0	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14096370	14096468	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14096469	14096608	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14096609	14096794	0.98	-	0	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14096609	14096794	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14096795	14096917	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14096918	14097048	0.65	-	2	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14096918	14097048	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14097049	14097459	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14097460	14097844	1	-	0	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14097460	14097844	.	-	.	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	start_codon	14097842	14097844	.	-	0	transcript_id "Ledus.S3G176600.t1"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	transcript	14093460	14097844	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	stop_codon	14093457	14093459	.	-	0	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14093460	14094201	0.98	-	1	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14093460	14094201	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14094202	14094591	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14094592	14094620	0.97	-	0	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14094592	14094620	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14094621	14095874	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14095875	14095988	0.85	-	0	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14095875	14095988	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14095989	14096224	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14096225	14096296	1	-	0	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14096225	14096296	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14096297	14096369	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14096370	14096468	1	-	0	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14096370	14096468	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14096469	14096608	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14096609	14096794	0.99	-	0	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14096609	14096794	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14096795	14096917	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14096918	14097048	0.63	-	2	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14096918	14097048	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	intron	14097049	14097459	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	CDS	14097460	14097844	1	-	0	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	exon	14097460	14097844	.	-	.	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
Ledus.S3	AUGUSTUS	start_codon	14097842	14097844	.	-	0	transcript_id "Ledus.S3G176600.t2"; gene_id "Ledus.S3G176600"
# This transcript jg9446.t2 is derived from g10476.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9447.t1 is derived from g10477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6933204	6933413	.	+	.	Ledus.S3G092400
Ledus.S3	AUGUSTUS	transcript	6933204	6933413	.	+	.	transcript_id "Ledus.S3G092400.t1"; gene_id "Ledus.S3G092400"
Ledus.S3	AUGUSTUS	start_codon	6933204	6933206	.	+	0	transcript_id "Ledus.S3G092400.t1"; gene_id "Ledus.S3G092400"
Ledus.S3	AUGUSTUS	CDS	6933204	6933413	0.5	+	0	transcript_id "Ledus.S3G092400.t1"; gene_id "Ledus.S3G092400"
Ledus.S3	AUGUSTUS	exon	6933204	6933413	.	+	.	transcript_id "Ledus.S3G092400.t1"; gene_id "Ledus.S3G092400"
Ledus.S3	AUGUSTUS	stop_codon	6933414	6933416	.	+	0	transcript_id "Ledus.S3G092400.t1"; gene_id "Ledus.S3G092400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2645.t1 is derived from g78.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1127676	1128730	.	-	.	Ledus.S1G006600
Ledus.S1	AUGUSTUS	transcript	1127676	1128730	.	-	.	transcript_id "Ledus.S1G006600.t1"; gene_id "Ledus.S1G006600"
Ledus.S1	AUGUSTUS	stop_codon	1127673	1127675	.	-	0	transcript_id "Ledus.S1G006600.t1"; gene_id "Ledus.S1G006600"
Ledus.S1	AUGUSTUS	CDS	1127676	1127782	0.85	-	2	transcript_id "Ledus.S1G006600.t1"; gene_id "Ledus.S1G006600"
Ledus.S1	AUGUSTUS	exon	1127676	1127782	.	-	.	transcript_id "Ledus.S1G006600.t1"; gene_id "Ledus.S1G006600"
Ledus.S1	AUGUSTUS	intron	1127783	1127868	.	-	.	transcript_id "Ledus.S1G006600.t1"; gene_id "Ledus.S1G006600"
Ledus.S1	AUGUSTUS	CDS	1127869	1128730	0.45	-	0	transcript_id "Ledus.S1G006600.t1"; gene_id "Ledus.S1G006600"
Ledus.S1	AUGUSTUS	exon	1127869	1128730	.	-	.	transcript_id "Ledus.S1G006600.t1"; gene_id "Ledus.S1G006600"
Ledus.S1	AUGUSTUS	start_codon	1128728	1128730	.	-	0	transcript_id "Ledus.S1G006600.t1"; gene_id "Ledus.S1G006600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg553.t1 is derived from g7414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3240509	3240724	.	-	.	Ledus.S2G043500
Ledus.S2	AUGUSTUS	transcript	3240509	3240724	.	-	.	transcript_id "Ledus.S2G043500.t1"; gene_id "Ledus.S2G043500"
Ledus.S2	AUGUSTUS	stop_codon	3240506	3240508	.	-	0	transcript_id "Ledus.S2G043500.t1"; gene_id "Ledus.S2G043500"
Ledus.S2	AUGUSTUS	CDS	3240509	3240724	0.63	-	0	transcript_id "Ledus.S2G043500.t1"; gene_id "Ledus.S2G043500"
Ledus.S2	AUGUSTUS	exon	3240509	3240724	.	-	.	transcript_id "Ledus.S2G043500.t1"; gene_id "Ledus.S2G043500"
Ledus.S2	AUGUSTUS	start_codon	3240722	3240724	.	-	0	transcript_id "Ledus.S2G043500.t1"; gene_id "Ledus.S2G043500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2860.t1 is derived from g294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4227119	4232021	.	+	.	Ledus.S1G028100
Ledus.S1	AUGUSTUS	transcript	4227119	4232021	.	+	.	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	start_codon	4227119	4227121	.	+	0	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	CDS	4227119	4227163	0.63	+	0	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	exon	4227119	4227163	.	+	.	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	intron	4227164	4227378	.	+	.	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	CDS	4227379	4227473	0.65	+	0	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	exon	4227379	4227473	.	+	.	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	intron	4227474	4228143	.	+	.	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	CDS	4228144	4228167	0.81	+	1	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	exon	4228144	4228167	.	+	.	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	intron	4228168	4228269	.	+	.	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	CDS	4228270	4231799	0.23	+	1	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	exon	4228270	4231799	.	+	.	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	intron	4231800	4231959	.	+	.	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	CDS	4231960	4232021	0.54	+	2	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	exon	4231960	4232021	.	+	.	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
Ledus.S1	AUGUSTUS	stop_codon	4232022	4232024	.	+	0	transcript_id "Ledus.S1G028100.t1"; gene_id "Ledus.S1G028100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11485.t1 is derived from g5103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4880735	4882121	.	+	.	Ledus.S4G064100
Ledus.S4	AUGUSTUS	transcript	4880735	4882121	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	start_codon	4880735	4880737	.	+	0	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	CDS	4880735	4880833	0.81	+	0	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	exon	4880735	4880833	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	intron	4880834	4880920	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	CDS	4880921	4880996	1	+	0	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	exon	4880921	4880996	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	intron	4880997	4881081	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	CDS	4881082	4881165	0.98	+	2	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	exon	4881082	4881165	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	intron	4881166	4881266	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	CDS	4881267	4881322	1	+	2	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	exon	4881267	4881322	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	intron	4881323	4881451	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	CDS	4881452	4881508	1	+	0	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	exon	4881452	4881508	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	intron	4881509	4881644	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	CDS	4881645	4881694	1	+	0	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	exon	4881645	4881694	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	intron	4881695	4881782	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	CDS	4881783	4881953	0.32	+	1	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	exon	4881783	4881953	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	intron	4881954	4882045	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	CDS	4882046	4882121	0.38	+	1	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	exon	4882046	4882121	.	+	.	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
Ledus.S4	AUGUSTUS	stop_codon	4882122	4882124	.	+	0	transcript_id "Ledus.S4G064100.t1"; gene_id "Ledus.S4G064100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1933.t1 is derived from g8796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13575692	13577081	.	+	.	Ledus.S2G181500
Ledus.S2	AUGUSTUS	transcript	13575692	13577081	.	+	.	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	start_codon	13575692	13575694	.	+	0	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	CDS	13575692	13575714	0.91	+	0	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	exon	13575692	13575714	.	+	.	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	intron	13575715	13576111	.	+	.	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	CDS	13576112	13576207	0.98	+	1	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	exon	13576112	13576207	.	+	.	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	intron	13576208	13576365	.	+	.	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	CDS	13576366	13576441	1	+	1	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	exon	13576366	13576441	.	+	.	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	intron	13576442	13576635	.	+	.	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	CDS	13576636	13576748	0.99	+	0	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	exon	13576636	13576748	.	+	.	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	intron	13576749	13577002	.	+	.	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	CDS	13577003	13577081	0.6	+	1	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	exon	13577003	13577081	.	+	.	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
Ledus.S2	AUGUSTUS	stop_codon	13577082	13577084	.	+	0	transcript_id "Ledus.S2G181500.t1"; gene_id "Ledus.S2G181500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9205.t1 is derived from g10235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5337507	5338427	.	-	.	Ledus.S3G068200
Ledus.S3	AUGUSTUS	transcript	5337507	5338427	.	-	.	transcript_id "Ledus.S3G068200.t1"; gene_id "Ledus.S3G068200"
Ledus.S3	AUGUSTUS	stop_codon	5337504	5337506	.	-	0	transcript_id "Ledus.S3G068200.t1"; gene_id "Ledus.S3G068200"
Ledus.S3	AUGUSTUS	CDS	5337507	5338427	0.94	-	0	transcript_id "Ledus.S3G068200.t1"; gene_id "Ledus.S3G068200"
Ledus.S3	AUGUSTUS	exon	5337507	5338427	.	-	.	transcript_id "Ledus.S3G068200.t1"; gene_id "Ledus.S3G068200"
Ledus.S3	AUGUSTUS	start_codon	5338425	5338427	.	-	0	transcript_id "Ledus.S3G068200.t1"; gene_id "Ledus.S3G068200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4316.t1 is derived from g1752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16180055	16187862	.	+	.	Ledus.S1G173700
Ledus.S1	AUGUSTUS	transcript	16180055	16187862	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	start_codon	16180055	16180057	.	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16180055	16180196	1	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16180055	16180196	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16180197	16180375	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16180376	16180924	1	+	2	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16180376	16180924	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16180925	16181020	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16181021	16181109	1	+	2	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16181021	16181109	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16181110	16181246	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16181247	16181798	1	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16181247	16181798	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16181799	16182001	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16182002	16182079	1	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16182002	16182079	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16182080	16182169	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16182170	16182322	1	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16182170	16182322	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16182323	16182428	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16182429	16182651	1	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16182429	16182651	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16182652	16182745	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16182746	16182846	1	+	2	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16182746	16182846	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16182847	16182950	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16182951	16183037	1	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16182951	16183037	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16183038	16183159	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16183160	16183312	1	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16183160	16183312	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16183313	16183394	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16183395	16183550	0.95	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16183395	16183550	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16183551	16183657	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16183658	16183867	1	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16183658	16183867	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16183868	16184015	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16184016	16184819	0.99	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16184016	16184819	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16184820	16184903	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16184904	16185452	1	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16184904	16185452	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16185453	16185541	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16185542	16186168	0.93	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16185542	16186168	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16186169	16186292	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16186293	16186397	1	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16186293	16186397	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16186398	16186521	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16186522	16186794	0.99	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16186522	16186794	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16186795	16186905	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16186906	16187062	0.94	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16186906	16187062	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	intron	16187063	16187167	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	CDS	16187168	16187862	0.92	+	2	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	exon	16187168	16187862	.	+	.	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
Ledus.S1	AUGUSTUS	stop_codon	16187863	16187865	.	+	0	transcript_id "Ledus.S1G173700.t1"; gene_id "Ledus.S1G173700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1911.t1 is derived from g8774.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13363911	13365697	.	-	.	Ledus.S2G179300
Ledus.S2	AUGUSTUS	transcript	13363911	13365697	.	-	.	transcript_id "Ledus.S2G179300.t1"; gene_id "Ledus.S2G179300"
Ledus.S2	AUGUSTUS	stop_codon	13363908	13363910	.	-	0	transcript_id "Ledus.S2G179300.t1"; gene_id "Ledus.S2G179300"
Ledus.S2	AUGUSTUS	CDS	13363911	13364310	0.66	-	1	transcript_id "Ledus.S2G179300.t1"; gene_id "Ledus.S2G179300"
Ledus.S2	AUGUSTUS	exon	13363911	13364310	.	-	.	transcript_id "Ledus.S2G179300.t1"; gene_id "Ledus.S2G179300"
Ledus.S2	AUGUSTUS	intron	13364311	13364918	.	-	.	transcript_id "Ledus.S2G179300.t1"; gene_id "Ledus.S2G179300"
Ledus.S2	AUGUSTUS	CDS	13364919	13365697	0.04	-	0	transcript_id "Ledus.S2G179300.t1"; gene_id "Ledus.S2G179300"
Ledus.S2	AUGUSTUS	exon	13364919	13365697	.	-	.	transcript_id "Ledus.S2G179300.t1"; gene_id "Ledus.S2G179300"
Ledus.S2	AUGUSTUS	start_codon	13365695	13365697	.	-	0	transcript_id "Ledus.S2G179300.t1"; gene_id "Ledus.S2G179300"
# This transcript jg10601.t2 is derived from g11631.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10602.t1 is derived from g11632.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16310808	16311416	.	-	.	Ledus.S3G207900
Ledus.S3	AUGUSTUS	transcript	16310872	16311416	.	-	.	transcript_id "Ledus.S3G207900.t1"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	stop_codon	16310869	16310871	.	-	0	transcript_id "Ledus.S3G207900.t1"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	CDS	16310872	16310889	0.98	-	0	transcript_id "Ledus.S3G207900.t1"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	exon	16310872	16310889	.	-	.	transcript_id "Ledus.S3G207900.t1"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	intron	16310890	16311074	.	-	.	transcript_id "Ledus.S3G207900.t1"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	CDS	16311075	16311416	0.8	-	0	transcript_id "Ledus.S3G207900.t1"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	exon	16311075	16311416	.	-	.	transcript_id "Ledus.S3G207900.t1"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	start_codon	16311414	16311416	.	-	0	transcript_id "Ledus.S3G207900.t1"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	transcript	16310808	16311416	.	-	.	transcript_id "Ledus.S3G207900.t2"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	stop_codon	16310805	16310807	.	-	0	transcript_id "Ledus.S3G207900.t2"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	CDS	16310808	16310897	0.48	-	0	transcript_id "Ledus.S3G207900.t2"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	exon	16310808	16310897	.	-	.	transcript_id "Ledus.S3G207900.t2"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	intron	16310898	16311074	.	-	.	transcript_id "Ledus.S3G207900.t2"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	CDS	16311075	16311416	0.61	-	0	transcript_id "Ledus.S3G207900.t2"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	exon	16311075	16311416	.	-	.	transcript_id "Ledus.S3G207900.t2"; gene_id "Ledus.S3G207900"
Ledus.S3	AUGUSTUS	start_codon	16311414	16311416	.	-	0	transcript_id "Ledus.S3G207900.t2"; gene_id "Ledus.S3G207900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12736.t1 is derived from g6358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14162976	14165305	.	-	.	Ledus.S4G189200
Ledus.S4	AUGUSTUS	transcript	14162976	14165305	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	stop_codon	14162973	14162975	.	-	0	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	CDS	14162976	14163014	1	-	0	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	exon	14162976	14163014	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	intron	14163015	14163091	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	CDS	14163092	14163154	1	-	0	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	exon	14163092	14163154	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	intron	14163155	14163244	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	CDS	14163245	14163322	1	-	0	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	exon	14163245	14163322	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	intron	14163323	14163528	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	CDS	14163529	14163788	1	-	2	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	exon	14163529	14163788	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	intron	14163789	14163932	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	CDS	14163933	14164006	1	-	1	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	exon	14163933	14164006	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	intron	14164007	14164246	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	CDS	14164247	14164398	1	-	0	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	exon	14164247	14164398	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	intron	14164399	14164945	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	CDS	14164946	14165026	0.75	-	0	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	exon	14164946	14165026	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	intron	14165027	14165203	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	CDS	14165204	14165305	0.72	-	0	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	exon	14165204	14165305	.	-	.	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
Ledus.S4	AUGUSTUS	start_codon	14165303	14165305	.	-	0	transcript_id "Ledus.S4G189200.t1"; gene_id "Ledus.S4G189200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4231.t1 is derived from g1667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15673471	15675472	.	-	.	Ledus.S1G165200
Ledus.S1	AUGUSTUS	transcript	15673471	15675472	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	stop_codon	15673468	15673470	.	-	0	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	CDS	15673471	15673522	0.95	-	1	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	exon	15673471	15673522	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	intron	15673523	15673623	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	CDS	15673624	15673661	0.95	-	0	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	exon	15673624	15673661	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	intron	15673662	15673781	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	CDS	15673782	15673844	1	-	0	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	exon	15673782	15673844	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	intron	15673845	15674005	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	CDS	15674006	15674092	1	-	0	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	exon	15674006	15674092	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	intron	15674093	15674231	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	CDS	15674232	15674332	1	-	2	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	exon	15674232	15674332	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	intron	15674333	15674998	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	CDS	15674999	15675253	1	-	2	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	exon	15674999	15675253	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	intron	15675254	15675420	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	CDS	15675421	15675472	0.81	-	0	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	exon	15675421	15675472	.	-	.	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
Ledus.S1	AUGUSTUS	start_codon	15675470	15675472	.	-	0	transcript_id "Ledus.S1G165200.t1"; gene_id "Ledus.S1G165200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2669.t1 is derived from g102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1522204	1525445	.	+	.	Ledus.S1G009000
Ledus.S1	AUGUSTUS	transcript	1522204	1525445	.	+	.	transcript_id "Ledus.S1G009000.t1"; gene_id "Ledus.S1G009000"
Ledus.S1	AUGUSTUS	start_codon	1522204	1522206	.	+	0	transcript_id "Ledus.S1G009000.t1"; gene_id "Ledus.S1G009000"
Ledus.S1	AUGUSTUS	CDS	1522204	1522255	0.89	+	0	transcript_id "Ledus.S1G009000.t1"; gene_id "Ledus.S1G009000"
Ledus.S1	AUGUSTUS	exon	1522204	1522255	.	+	.	transcript_id "Ledus.S1G009000.t1"; gene_id "Ledus.S1G009000"
Ledus.S1	AUGUSTUS	intron	1522256	1522389	.	+	.	transcript_id "Ledus.S1G009000.t1"; gene_id "Ledus.S1G009000"
Ledus.S1	AUGUSTUS	CDS	1522390	1525445	1	+	2	transcript_id "Ledus.S1G009000.t1"; gene_id "Ledus.S1G009000"
Ledus.S1	AUGUSTUS	exon	1522390	1525445	.	+	.	transcript_id "Ledus.S1G009000.t1"; gene_id "Ledus.S1G009000"
Ledus.S1	AUGUSTUS	stop_codon	1525446	1525448	.	+	0	transcript_id "Ledus.S1G009000.t1"; gene_id "Ledus.S1G009000"
# This transcript jg6093.t2 is derived from g3536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6094.t1 is derived from g3537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28885035	28888370	.	+	.	Ledus.S1G351500
Ledus.S1	AUGUSTUS	transcript	28885035	28888370	.	+	.	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	start_codon	28885035	28885037	.	+	0	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	CDS	28885035	28885112	0.62	+	0	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	exon	28885035	28885112	.	+	.	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	intron	28885113	28885804	.	+	.	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	CDS	28885805	28886242	1	+	0	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	exon	28885805	28886242	.	+	.	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	intron	28886243	28886367	.	+	.	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	CDS	28886368	28886459	1	+	0	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	exon	28886368	28886459	.	+	.	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	intron	28886460	28886625	.	+	.	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	CDS	28886626	28887099	0.62	+	1	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	exon	28886626	28887099	.	+	.	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	intron	28887100	28887235	.	+	.	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	CDS	28887236	28888370	0.98	+	1	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	exon	28887236	28888370	.	+	.	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
Ledus.S1	AUGUSTUS	stop_codon	28888371	28888373	.	+	0	transcript_id "Ledus.S1G351500.t1"; gene_id "Ledus.S1G351500"
# This transcript jg3870.t2 is derived from g1306.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3871.t1 is derived from g1307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13285198	13286443	.	-	.	Ledus.S1G129200
Ledus.S1	AUGUSTUS	transcript	13285198	13286443	.	-	.	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	stop_codon	13285195	13285197	.	-	0	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	CDS	13285198	13285319	1	-	2	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	exon	13285198	13285319	.	-	.	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	intron	13285320	13285540	.	-	.	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	CDS	13285541	13285621	1	-	2	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	exon	13285541	13285621	.	-	.	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	intron	13285622	13285761	.	-	.	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	CDS	13285762	13286049	1	-	2	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	exon	13285762	13286049	.	-	.	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	intron	13286050	13286283	.	-	.	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	CDS	13286284	13286443	0.75	-	0	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	exon	13286284	13286443	.	-	.	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
Ledus.S1	AUGUSTUS	start_codon	13286441	13286443	.	-	0	transcript_id "Ledus.S1G129200.t1"; gene_id "Ledus.S1G129200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7910.t1 is derived from g12581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7785614	7789521	.	-	.	Ledus.S5G068800
Ledus.S5	AUGUSTUS	transcript	7785614	7789521	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	stop_codon	7785611	7785613	.	-	0	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7785614	7785730	0.96	-	0	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7785614	7785730	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7785731	7785875	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7785876	7785919	1	-	2	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7785876	7785919	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7785920	7785997	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7785998	7786128	1	-	1	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7785998	7786128	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7786129	7786218	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7786219	7786298	1	-	0	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7786219	7786298	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7786299	7786382	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7786383	7786445	1	-	0	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7786383	7786445	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7786446	7786634	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7786635	7786744	1	-	2	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7786635	7786744	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7786745	7786850	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7786851	7786959	1	-	0	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7786851	7786959	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7786960	7787058	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7787059	7787133	1	-	0	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7787059	7787133	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7787134	7787217	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7787218	7787314	1	-	1	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7787218	7787314	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7787315	7787397	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7787398	7787459	1	-	0	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7787398	7787459	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7787460	7787562	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7787563	7787599	0.99	-	1	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7787563	7787599	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7787600	7787712	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7787713	7787773	0.96	-	2	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7787713	7787773	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7787774	7787879	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7787880	7787994	0.98	-	0	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7787880	7787994	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7787995	7788095	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7788096	7788188	1	-	0	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7788096	7788188	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7788189	7788363	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7788364	7788412	1	-	1	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7788364	7788412	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7788413	7788514	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7788515	7788618	0.99	-	0	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7788515	7788618	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7788619	7788770	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7788771	7788837	1	-	1	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7788771	7788837	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	intron	7788838	7789276	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	CDS	7789277	7789521	1	-	0	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	exon	7789277	7789521	.	-	.	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
Ledus.S5	AUGUSTUS	start_codon	7789519	7789521	.	-	0	transcript_id "Ledus.S5G068800.t1"; gene_id "Ledus.S5G068800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1294.t1 is derived from g8155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9133733	9135172	.	-	.	Ledus.S2G117600
Ledus.S2	AUGUSTUS	transcript	9133733	9135172	.	-	.	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	stop_codon	9133730	9133732	.	-	0	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	CDS	9133733	9133954	1	-	0	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	exon	9133733	9133954	.	-	.	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	intron	9133955	9134032	.	-	.	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	CDS	9134033	9134118	1	-	2	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	exon	9134033	9134118	.	-	.	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	intron	9134119	9134212	.	-	.	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	CDS	9134213	9134375	1	-	0	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	exon	9134213	9134375	.	-	.	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	intron	9134376	9134450	.	-	.	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	CDS	9134451	9134589	1	-	1	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	exon	9134451	9134589	.	-	.	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	intron	9134590	9134678	.	-	.	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	CDS	9134679	9135172	0.93	-	0	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	exon	9134679	9135172	.	-	.	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
Ledus.S2	AUGUSTUS	start_codon	9135170	9135172	.	-	0	transcript_id "Ledus.S2G117600.t1"; gene_id "Ledus.S2G117600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7684.t1 is derived from g12355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5170540	5174822	.	-	.	Ledus.S5G046200
Ledus.S5	AUGUSTUS	transcript	5170540	5174822	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	stop_codon	5170537	5170539	.	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5170540	5170674	1	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5170540	5170674	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5170675	5170775	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5170776	5170850	1	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5170776	5170850	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5170851	5170971	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5170972	5171085	1	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5170972	5171085	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5171086	5171214	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5171215	5171265	1	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5171215	5171265	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5171266	5171425	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5171426	5171512	1	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5171426	5171512	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5171513	5171634	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5171635	5171697	1	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5171635	5171697	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5171698	5171852	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5171853	5171894	1	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5171853	5171894	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5171895	5172007	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5172008	5172100	1	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5172008	5172100	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5172101	5172261	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5172262	5172311	1	-	2	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5172262	5172311	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5172312	5172476	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5172477	5172580	0.93	-	1	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5172477	5172580	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5172581	5172688	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5172689	5172756	0.77	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5172689	5172756	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5172757	5173529	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5173530	5173793	0.42	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5173530	5173793	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5173794	5174033	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5174034	5174572	0.44	-	2	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5174034	5174572	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	intron	5174573	5174770	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	CDS	5174771	5174822	0.27	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	exon	5174771	5174822	.	-	.	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
Ledus.S5	AUGUSTUS	start_codon	5174820	5174822	.	-	0	transcript_id "Ledus.S5G046200.t1"; gene_id "Ledus.S5G046200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5861.t1 is derived from g3303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27391085	27395465	.	+	.	Ledus.S1G328200
Ledus.S1	AUGUSTUS	transcript	27391085	27395465	.	+	.	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	start_codon	27391085	27391087	.	+	0	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	CDS	27391085	27392668	0.51	+	0	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	exon	27391085	27392668	.	+	.	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	intron	27392669	27392770	.	+	.	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	CDS	27392771	27392844	0.52	+	0	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	exon	27392771	27392844	.	+	.	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	intron	27392845	27393097	.	+	.	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	CDS	27393098	27393171	0.8	+	1	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	exon	27393098	27393171	.	+	.	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	intron	27393172	27393354	.	+	.	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	CDS	27393355	27393441	0.37	+	2	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	exon	27393355	27393441	.	+	.	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	intron	27393442	27393636	.	+	.	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	CDS	27393637	27394050	0.57	+	2	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	exon	27393637	27394050	.	+	.	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	intron	27394051	27394113	.	+	.	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	CDS	27394114	27395465	0.99	+	2	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	exon	27394114	27395465	.	+	.	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
Ledus.S1	AUGUSTUS	stop_codon	27395466	27395468	.	+	0	transcript_id "Ledus.S1G328200.t1"; gene_id "Ledus.S1G328200"
# This transcript jg8515.t2 is derived from g13187.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8516.t1 is derived from g13188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12410025	12411379	.	-	.	Ledus.S5G129400
Ledus.S5	AUGUSTUS	transcript	12410025	12411379	.	-	.	transcript_id "Ledus.S5G129400.t1"; gene_id "Ledus.S5G129400"
Ledus.S5	AUGUSTUS	stop_codon	12410022	12410024	.	-	0	transcript_id "Ledus.S5G129400.t1"; gene_id "Ledus.S5G129400"
Ledus.S5	AUGUSTUS	CDS	12410025	12410144	0.99	-	0	transcript_id "Ledus.S5G129400.t1"; gene_id "Ledus.S5G129400"
Ledus.S5	AUGUSTUS	exon	12410025	12410144	.	-	.	transcript_id "Ledus.S5G129400.t1"; gene_id "Ledus.S5G129400"
Ledus.S5	AUGUSTUS	intron	12410145	12410278	.	-	.	transcript_id "Ledus.S5G129400.t1"; gene_id "Ledus.S5G129400"
Ledus.S5	AUGUSTUS	CDS	12410279	12411379	1	-	0	transcript_id "Ledus.S5G129400.t1"; gene_id "Ledus.S5G129400"
Ledus.S5	AUGUSTUS	exon	12410279	12411379	.	-	.	transcript_id "Ledus.S5G129400.t1"; gene_id "Ledus.S5G129400"
Ledus.S5	AUGUSTUS	start_codon	12411377	12411379	.	-	0	transcript_id "Ledus.S5G129400.t1"; gene_id "Ledus.S5G129400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6226.t1 is derived from g3669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29749484	29749738	.	-	.	Ledus.S1G364700
Ledus.S1	AUGUSTUS	transcript	29749484	29749738	.	-	.	transcript_id "Ledus.S1G364700.t1"; gene_id "Ledus.S1G364700"
Ledus.S1	AUGUSTUS	stop_codon	29749481	29749483	.	-	0	transcript_id "Ledus.S1G364700.t1"; gene_id "Ledus.S1G364700"
Ledus.S1	AUGUSTUS	CDS	29749484	29749738	1	-	0	transcript_id "Ledus.S1G364700.t1"; gene_id "Ledus.S1G364700"
Ledus.S1	AUGUSTUS	exon	29749484	29749738	.	-	.	transcript_id "Ledus.S1G364700.t1"; gene_id "Ledus.S1G364700"
Ledus.S1	AUGUSTUS	start_codon	29749736	29749738	.	-	0	transcript_id "Ledus.S1G364700.t1"; gene_id "Ledus.S1G364700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7552.t1 is derived from g12223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3993848	3995275	.	+	.	Ledus.S5G033000
Ledus.S5	AUGUSTUS	transcript	3993848	3995275	.	+	.	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	start_codon	3993848	3993850	.	+	0	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	CDS	3993848	3993945	0.27	+	0	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	exon	3993848	3993945	.	+	.	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	intron	3993946	3994031	.	+	.	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	CDS	3994032	3994151	0.25	+	1	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	exon	3994032	3994151	.	+	.	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	intron	3994152	3994239	.	+	.	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	CDS	3994240	3994324	0.98	+	1	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	exon	3994240	3994324	.	+	.	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	intron	3994325	3994560	.	+	.	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	CDS	3994561	3994877	0.96	+	0	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	exon	3994561	3994877	.	+	.	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	intron	3994878	3995133	.	+	.	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	CDS	3995134	3995275	0.95	+	1	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	exon	3995134	3995275	.	+	.	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
Ledus.S5	AUGUSTUS	stop_codon	3995276	3995278	.	+	0	transcript_id "Ledus.S5G033000.t1"; gene_id "Ledus.S5G033000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7324.t1 is derived from g11995.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1180793	1182706	.	+	.	Ledus.S5G010200
Ledus.S5	AUGUSTUS	transcript	1180793	1182706	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	start_codon	1180793	1180795	.	+	0	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	CDS	1180793	1181126	0.85	+	0	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	exon	1180793	1181126	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	intron	1181127	1181202	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	CDS	1181203	1181288	1	+	2	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	exon	1181203	1181288	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	intron	1181289	1181362	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	CDS	1181363	1181456	1	+	0	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	exon	1181363	1181456	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	intron	1181457	1181577	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	CDS	1181578	1181654	0.98	+	2	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	exon	1181578	1181654	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	intron	1181655	1181753	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	CDS	1181754	1181881	1	+	0	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	exon	1181754	1181881	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	intron	1181882	1181953	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	CDS	1181954	1182025	1	+	1	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	exon	1181954	1182025	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	intron	1182026	1182107	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	CDS	1182108	1182178	1	+	1	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	exon	1182108	1182178	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	intron	1182179	1182258	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	CDS	1182259	1182337	1	+	2	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	exon	1182259	1182337	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	intron	1182338	1182419	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	CDS	1182420	1182563	0.88	+	1	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	exon	1182420	1182563	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	intron	1182564	1182666	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	CDS	1182667	1182706	0.88	+	1	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	exon	1182667	1182706	.	+	.	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
Ledus.S5	AUGUSTUS	stop_codon	1182707	1182709	.	+	0	transcript_id "Ledus.S5G010200.t1"; gene_id "Ledus.S5G010200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8411.t1 is derived from g13083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11512865	11516028	.	-	.	Ledus.S5G118900
Ledus.S5	AUGUSTUS	transcript	11512865	11516028	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	stop_codon	11512862	11512864	.	-	0	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	CDS	11512865	11513131	0.63	-	0	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	exon	11512865	11513131	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	intron	11513132	11513513	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	CDS	11513514	11513708	0.99	-	0	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	exon	11513514	11513708	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	intron	11513709	11513911	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	CDS	11513912	11514012	1	-	2	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	exon	11513912	11514012	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	intron	11514013	11514110	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	CDS	11514111	11514197	0.46	-	2	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	exon	11514111	11514197	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	intron	11514198	11514427	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	CDS	11514428	11514511	0.54	-	2	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	exon	11514428	11514511	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	intron	11514512	11514589	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	CDS	11514590	11514705	1	-	1	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	exon	11514590	11514705	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	intron	11514706	11514824	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	CDS	11514825	11514958	0.97	-	0	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	exon	11514825	11514958	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	intron	11514959	11515038	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	CDS	11515039	11515163	1	-	2	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	exon	11515039	11515163	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	intron	11515164	11515320	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	CDS	11515321	11515514	1	-	1	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	exon	11515321	11515514	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	intron	11515515	11515661	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	CDS	11515662	11515933	1	-	0	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	exon	11515662	11515933	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	intron	11515934	11516016	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	CDS	11516017	11516028	0.83	-	0	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	exon	11516017	11516028	.	-	.	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
Ledus.S5	AUGUSTUS	start_codon	11516026	11516028	.	-	0	transcript_id "Ledus.S5G118900.t1"; gene_id "Ledus.S5G118900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg931.t1 is derived from g7792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6214528	6216504	.	+	.	Ledus.S2G081300
Ledus.S2	AUGUSTUS	transcript	6214528	6216504	.	+	.	transcript_id "Ledus.S2G081300.t1"; gene_id "Ledus.S2G081300"
Ledus.S2	AUGUSTUS	start_codon	6214528	6214530	.	+	0	transcript_id "Ledus.S2G081300.t1"; gene_id "Ledus.S2G081300"
Ledus.S2	AUGUSTUS	CDS	6214528	6216504	0.95	+	0	transcript_id "Ledus.S2G081300.t1"; gene_id "Ledus.S2G081300"
Ledus.S2	AUGUSTUS	exon	6214528	6216504	.	+	.	transcript_id "Ledus.S2G081300.t1"; gene_id "Ledus.S2G081300"
Ledus.S2	AUGUSTUS	stop_codon	6216505	6216507	.	+	0	transcript_id "Ledus.S2G081300.t1"; gene_id "Ledus.S2G081300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9726.t1 is derived from g10756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9434040	9435974	.	+	.	Ledus.S3G120300
Ledus.S3	AUGUSTUS	transcript	9434040	9435974	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	start_codon	9434040	9434042	.	+	0	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	CDS	9434040	9434163	0.95	+	0	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	exon	9434040	9434163	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	intron	9434164	9434247	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	CDS	9434248	9434511	1	+	2	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	exon	9434248	9434511	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	intron	9434512	9434697	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	CDS	9434698	9434909	0.99	+	2	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	exon	9434698	9434909	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	intron	9434910	9435021	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	CDS	9435022	9435157	0.99	+	0	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	exon	9435022	9435157	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	intron	9435158	9435269	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	CDS	9435270	9435406	0.92	+	2	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	exon	9435270	9435406	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	intron	9435407	9435501	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	CDS	9435502	9435665	0.82	+	0	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	exon	9435502	9435665	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	intron	9435666	9435776	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	CDS	9435777	9435838	0.83	+	1	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	exon	9435777	9435838	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	intron	9435839	9435924	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	CDS	9435925	9435974	1	+	2	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	exon	9435925	9435974	.	+	.	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
Ledus.S3	AUGUSTUS	stop_codon	9435975	9435977	.	+	0	transcript_id "Ledus.S3G120300.t1"; gene_id "Ledus.S3G120300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg252.t1 is derived from g7113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1168672	1169034	.	-	.	Ledus.S2G013400
Ledus.S2	AUGUSTUS	transcript	1168672	1169034	.	-	.	transcript_id "Ledus.S2G013400.t1"; gene_id "Ledus.S2G013400"
Ledus.S2	AUGUSTUS	stop_codon	1168669	1168671	.	-	0	transcript_id "Ledus.S2G013400.t1"; gene_id "Ledus.S2G013400"
Ledus.S2	AUGUSTUS	CDS	1168672	1168839	0.98	-	0	transcript_id "Ledus.S2G013400.t1"; gene_id "Ledus.S2G013400"
Ledus.S2	AUGUSTUS	exon	1168672	1168839	.	-	.	transcript_id "Ledus.S2G013400.t1"; gene_id "Ledus.S2G013400"
Ledus.S2	AUGUSTUS	intron	1168840	1168917	.	-	.	transcript_id "Ledus.S2G013400.t1"; gene_id "Ledus.S2G013400"
Ledus.S2	AUGUSTUS	CDS	1168918	1169034	1	-	0	transcript_id "Ledus.S2G013400.t1"; gene_id "Ledus.S2G013400"
Ledus.S2	AUGUSTUS	exon	1168918	1169034	.	-	.	transcript_id "Ledus.S2G013400.t1"; gene_id "Ledus.S2G013400"
Ledus.S2	AUGUSTUS	start_codon	1169032	1169034	.	-	0	transcript_id "Ledus.S2G013400.t1"; gene_id "Ledus.S2G013400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7528.t1 is derived from g12199.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3624763	3625080	.	-	.	Ledus.S5G030600
Ledus.S5	AUGUSTUS	transcript	3624763	3625080	.	-	.	transcript_id "Ledus.S5G030600.t1"; gene_id "Ledus.S5G030600"
Ledus.S5	AUGUSTUS	stop_codon	3624760	3624762	.	-	0	transcript_id "Ledus.S5G030600.t1"; gene_id "Ledus.S5G030600"
Ledus.S5	AUGUSTUS	CDS	3624763	3625080	0.94	-	0	transcript_id "Ledus.S5G030600.t1"; gene_id "Ledus.S5G030600"
Ledus.S5	AUGUSTUS	exon	3624763	3625080	.	-	.	transcript_id "Ledus.S5G030600.t1"; gene_id "Ledus.S5G030600"
Ledus.S5	AUGUSTUS	start_codon	3625078	3625080	.	-	0	transcript_id "Ledus.S5G030600.t1"; gene_id "Ledus.S5G030600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8248.t1 is derived from g12919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10151013	10153692	.	-	.	Ledus.S5G102600
Ledus.S5	AUGUSTUS	transcript	10151013	10153692	.	-	.	transcript_id "Ledus.S5G102600.t1"; gene_id "Ledus.S5G102600"
Ledus.S5	AUGUSTUS	stop_codon	10151010	10151012	.	-	0	transcript_id "Ledus.S5G102600.t1"; gene_id "Ledus.S5G102600"
Ledus.S5	AUGUSTUS	CDS	10151013	10153143	0.69	-	1	transcript_id "Ledus.S5G102600.t1"; gene_id "Ledus.S5G102600"
Ledus.S5	AUGUSTUS	exon	10151013	10153143	.	-	.	transcript_id "Ledus.S5G102600.t1"; gene_id "Ledus.S5G102600"
Ledus.S5	AUGUSTUS	intron	10153144	10153271	.	-	.	transcript_id "Ledus.S5G102600.t1"; gene_id "Ledus.S5G102600"
Ledus.S5	AUGUSTUS	CDS	10153272	10153345	0.62	-	0	transcript_id "Ledus.S5G102600.t1"; gene_id "Ledus.S5G102600"
Ledus.S5	AUGUSTUS	exon	10153272	10153345	.	-	.	transcript_id "Ledus.S5G102600.t1"; gene_id "Ledus.S5G102600"
Ledus.S5	AUGUSTUS	intron	10153346	10153587	.	-	.	transcript_id "Ledus.S5G102600.t1"; gene_id "Ledus.S5G102600"
Ledus.S5	AUGUSTUS	CDS	10153588	10153692	0.68	-	0	transcript_id "Ledus.S5G102600.t1"; gene_id "Ledus.S5G102600"
Ledus.S5	AUGUSTUS	exon	10153588	10153692	.	-	.	transcript_id "Ledus.S5G102600.t1"; gene_id "Ledus.S5G102600"
Ledus.S5	AUGUSTUS	start_codon	10153690	10153692	.	-	0	transcript_id "Ledus.S5G102600.t1"; gene_id "Ledus.S5G102600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3557.t1 is derived from g993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9544748	9546428	.	-	.	Ledus.S1G097800
Ledus.S1	AUGUSTUS	transcript	9544748	9546428	.	-	.	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	stop_codon	9544745	9544747	.	-	0	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	CDS	9544748	9544955	1	-	1	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	exon	9544748	9544955	.	-	.	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	intron	9544956	9545075	.	-	.	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	CDS	9545076	9545182	1	-	0	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	exon	9545076	9545182	.	-	.	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	intron	9545183	9545285	.	-	.	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	CDS	9545286	9545426	0.97	-	0	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	exon	9545286	9545426	.	-	.	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	intron	9545427	9545551	.	-	.	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	CDS	9545552	9545692	1	-	0	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	exon	9545552	9545692	.	-	.	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	intron	9545693	9545807	.	-	.	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	CDS	9545808	9546428	0.49	-	0	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	exon	9545808	9546428	.	-	.	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
Ledus.S1	AUGUSTUS	start_codon	9546426	9546428	.	-	0	transcript_id "Ledus.S1G097800.t1"; gene_id "Ledus.S1G097800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4118.t1 is derived from g1554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14781184	14782008	.	-	.	Ledus.S1G153900
Ledus.S1	AUGUSTUS	transcript	14781184	14782008	.	-	.	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	stop_codon	14781181	14781183	.	-	0	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	CDS	14781184	14781191	1	-	2	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	exon	14781184	14781191	.	-	.	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	intron	14781192	14781336	.	-	.	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	CDS	14781337	14781341	0.94	-	1	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	exon	14781337	14781341	.	-	.	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	intron	14781342	14781447	.	-	.	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	CDS	14781448	14781532	1	-	2	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	exon	14781448	14781532	.	-	.	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	intron	14781533	14781764	.	-	.	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	CDS	14781765	14782008	0.68	-	0	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	exon	14781765	14782008	.	-	.	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
Ledus.S1	AUGUSTUS	start_codon	14782006	14782008	.	-	0	transcript_id "Ledus.S1G153900.t1"; gene_id "Ledus.S1G153900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2020.t1 is derived from g8883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14208840	14210623	.	+	.	Ledus.S2G190200
Ledus.S2	AUGUSTUS	transcript	14208840	14210623	.	+	.	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	start_codon	14208840	14208842	.	+	0	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	CDS	14208840	14208911	0.66	+	0	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	exon	14208840	14208911	.	+	.	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	intron	14208912	14209023	.	+	.	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	CDS	14209024	14209123	0.76	+	0	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	exon	14209024	14209123	.	+	.	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	intron	14209124	14209258	.	+	.	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	CDS	14209259	14209344	1	+	2	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	exon	14209259	14209344	.	+	.	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	intron	14209345	14210003	.	+	.	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	CDS	14210004	14210095	1	+	0	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	exon	14210004	14210095	.	+	.	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	intron	14210096	14210169	.	+	.	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	CDS	14210170	14210284	1	+	1	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	exon	14210170	14210284	.	+	.	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	intron	14210285	14210383	.	+	.	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	CDS	14210384	14210623	1	+	0	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	exon	14210384	14210623	.	+	.	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
Ledus.S2	AUGUSTUS	stop_codon	14210624	14210626	.	+	0	transcript_id "Ledus.S2G190200.t1"; gene_id "Ledus.S2G190200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7107.t1 is derived from g6638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1574546	1577491	.	+	.	Ledus.C7G016800
Ledus.C7	AUGUSTUS	transcript	1574546	1577491	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	start_codon	1574546	1574548	.	+	0	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	CDS	1574546	1574881	0.65	+	0	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	exon	1574546	1574881	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	intron	1574882	1574973	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	CDS	1574974	1575093	1	+	0	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	exon	1574974	1575093	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	intron	1575094	1575257	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	CDS	1575258	1575692	0.98	+	0	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	exon	1575258	1575692	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	intron	1575693	1575833	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	CDS	1575834	1575924	1	+	0	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	exon	1575834	1575924	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	intron	1575925	1576051	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	CDS	1576052	1576296	1	+	2	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	exon	1576052	1576296	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	intron	1576297	1576488	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	CDS	1576489	1576653	1	+	0	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	exon	1576489	1576653	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	intron	1576654	1576743	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	CDS	1576744	1576818	1	+	0	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	exon	1576744	1576818	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	intron	1576819	1576909	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	CDS	1576910	1577041	1	+	0	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	exon	1576910	1577041	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	intron	1577042	1577135	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	CDS	1577136	1577192	1	+	0	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	exon	1577136	1577192	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	intron	1577193	1577290	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	CDS	1577291	1577491	1	+	0	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	exon	1577291	1577491	.	+	.	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
Ledus.C7	AUGUSTUS	stop_codon	1577492	1577494	.	+	0	transcript_id "Ledus.C7G016800.t1"; gene_id "Ledus.C7G016800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3551.t1 is derived from g987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9401751	9402038	.	+	.	Ledus.S1G097200
Ledus.S1	AUGUSTUS	transcript	9401751	9402038	.	+	.	transcript_id "Ledus.S1G097200.t1"; gene_id "Ledus.S1G097200"
Ledus.S1	AUGUSTUS	start_codon	9401751	9401753	.	+	0	transcript_id "Ledus.S1G097200.t1"; gene_id "Ledus.S1G097200"
Ledus.S1	AUGUSTUS	CDS	9401751	9402038	0.43	+	0	transcript_id "Ledus.S1G097200.t1"; gene_id "Ledus.S1G097200"
Ledus.S1	AUGUSTUS	exon	9401751	9402038	.	+	.	transcript_id "Ledus.S1G097200.t1"; gene_id "Ledus.S1G097200"
Ledus.S1	AUGUSTUS	stop_codon	9402039	9402041	.	+	0	transcript_id "Ledus.S1G097200.t1"; gene_id "Ledus.S1G097200"
# This transcript jg13153.t2 is derived from g6963.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13154.t1 is derived from g6964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7556059	7560073	.	-	.	Ledus.S6G021600
Ledus.S6	AUGUSTUS	transcript	7556059	7560073	.	-	.	transcript_id "Ledus.S6G021600.t1"; gene_id "Ledus.S6G021600"
Ledus.S6	AUGUSTUS	stop_codon	7556056	7556058	.	-	0	transcript_id "Ledus.S6G021600.t1"; gene_id "Ledus.S6G021600"
Ledus.S6	AUGUSTUS	CDS	7556059	7558065	0.58	-	0	transcript_id "Ledus.S6G021600.t1"; gene_id "Ledus.S6G021600"
Ledus.S6	AUGUSTUS	exon	7556059	7558065	.	-	.	transcript_id "Ledus.S6G021600.t1"; gene_id "Ledus.S6G021600"
Ledus.S6	AUGUSTUS	intron	7558066	7558200	.	-	.	transcript_id "Ledus.S6G021600.t1"; gene_id "Ledus.S6G021600"
Ledus.S6	AUGUSTUS	CDS	7558201	7558483	1	-	1	transcript_id "Ledus.S6G021600.t1"; gene_id "Ledus.S6G021600"
Ledus.S6	AUGUSTUS	exon	7558201	7558483	.	-	.	transcript_id "Ledus.S6G021600.t1"; gene_id "Ledus.S6G021600"
Ledus.S6	AUGUSTUS	intron	7558484	7558763	.	-	.	transcript_id "Ledus.S6G021600.t1"; gene_id "Ledus.S6G021600"
Ledus.S6	AUGUSTUS	CDS	7558764	7560073	0.7	-	0	transcript_id "Ledus.S6G021600.t1"; gene_id "Ledus.S6G021600"
Ledus.S6	AUGUSTUS	exon	7558764	7560073	.	-	.	transcript_id "Ledus.S6G021600.t1"; gene_id "Ledus.S6G021600"
Ledus.S6	AUGUSTUS	start_codon	7560071	7560073	.	-	0	transcript_id "Ledus.S6G021600.t1"; gene_id "Ledus.S6G021600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg377.t1 is derived from g7238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2028420	2031046	.	+	.	Ledus.S2G025900
Ledus.S2	AUGUSTUS	transcript	2028420	2031046	.	+	.	transcript_id "Ledus.S2G025900.t1"; gene_id "Ledus.S2G025900"
Ledus.S2	AUGUSTUS	start_codon	2028420	2028422	.	+	0	transcript_id "Ledus.S2G025900.t1"; gene_id "Ledus.S2G025900"
Ledus.S2	AUGUSTUS	CDS	2028420	2030154	0.89	+	0	transcript_id "Ledus.S2G025900.t1"; gene_id "Ledus.S2G025900"
Ledus.S2	AUGUSTUS	exon	2028420	2030154	.	+	.	transcript_id "Ledus.S2G025900.t1"; gene_id "Ledus.S2G025900"
Ledus.S2	AUGUSTUS	intron	2030155	2030291	.	+	.	transcript_id "Ledus.S2G025900.t1"; gene_id "Ledus.S2G025900"
Ledus.S2	AUGUSTUS	CDS	2030292	2031046	0.97	+	2	transcript_id "Ledus.S2G025900.t1"; gene_id "Ledus.S2G025900"
Ledus.S2	AUGUSTUS	exon	2030292	2031046	.	+	.	transcript_id "Ledus.S2G025900.t1"; gene_id "Ledus.S2G025900"
Ledus.S2	AUGUSTUS	stop_codon	2031047	2031049	.	+	0	transcript_id "Ledus.S2G025900.t1"; gene_id "Ledus.S2G025900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6865.t1 is derived from g4309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34808822	34811452	.	+	.	Ledus.S1G428600
Ledus.S1	AUGUSTUS	transcript	34808822	34811452	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	start_codon	34808822	34808824	.	+	0	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	CDS	34808822	34809024	0.98	+	0	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	exon	34808822	34809024	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	intron	34809025	34809263	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	CDS	34809264	34809326	1	+	1	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	exon	34809264	34809326	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	intron	34809327	34809452	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	CDS	34809453	34809512	1	+	1	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	exon	34809453	34809512	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	intron	34809513	34809646	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	CDS	34809647	34809737	1	+	1	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	exon	34809647	34809737	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	intron	34809738	34809839	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	CDS	34809840	34809894	1	+	0	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	exon	34809840	34809894	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	intron	34809895	34809982	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	CDS	34809983	34810062	1	+	2	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	exon	34809983	34810062	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	intron	34810063	34810146	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	CDS	34810147	34810263	1	+	0	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	exon	34810147	34810263	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	intron	34810264	34810358	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	CDS	34810359	34810443	1	+	0	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	exon	34810359	34810443	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	intron	34810444	34810550	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	CDS	34810551	34810642	1	+	2	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	exon	34810551	34810642	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	intron	34810643	34810746	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	CDS	34810747	34811000	0.98	+	0	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	exon	34810747	34811000	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	intron	34811001	34811094	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	CDS	34811095	34811183	1	+	1	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	exon	34811095	34811183	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	intron	34811184	34811315	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	CDS	34811316	34811452	0.99	+	2	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	exon	34811316	34811452	.	+	.	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
Ledus.S1	AUGUSTUS	stop_codon	34811453	34811455	.	+	0	transcript_id "Ledus.S1G428600.t1"; gene_id "Ledus.S1G428600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4847.t1 is derived from g2285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20116520	20117341	.	-	.	Ledus.S1G226800
Ledus.S1	AUGUSTUS	transcript	20116520	20117341	.	-	.	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	stop_codon	20116517	20116519	.	-	0	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	CDS	20116520	20116631	0.41	-	1	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	exon	20116520	20116631	.	-	.	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	intron	20116632	20116739	.	-	.	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	CDS	20116740	20116875	0.86	-	2	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	exon	20116740	20116875	.	-	.	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	intron	20116876	20117001	.	-	.	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	CDS	20117002	20117111	0.85	-	1	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	exon	20117002	20117111	.	-	.	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	intron	20117112	20117282	.	-	.	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	CDS	20117283	20117341	0.5	-	0	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	exon	20117283	20117341	.	-	.	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
Ledus.S1	AUGUSTUS	start_codon	20117339	20117341	.	-	0	transcript_id "Ledus.S1G226800.t1"; gene_id "Ledus.S1G226800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2275.t1 is derived from g9138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16882678	16883498	.	+	.	Ledus.S2G215700
Ledus.S2	AUGUSTUS	transcript	16882678	16883498	.	+	.	transcript_id "Ledus.S2G215700.t1"; gene_id "Ledus.S2G215700"
Ledus.S2	AUGUSTUS	start_codon	16882678	16882680	.	+	0	transcript_id "Ledus.S2G215700.t1"; gene_id "Ledus.S2G215700"
Ledus.S2	AUGUSTUS	CDS	16882678	16882746	0.27	+	0	transcript_id "Ledus.S2G215700.t1"; gene_id "Ledus.S2G215700"
Ledus.S2	AUGUSTUS	exon	16882678	16882746	.	+	.	transcript_id "Ledus.S2G215700.t1"; gene_id "Ledus.S2G215700"
Ledus.S2	AUGUSTUS	intron	16882747	16882821	.	+	.	transcript_id "Ledus.S2G215700.t1"; gene_id "Ledus.S2G215700"
Ledus.S2	AUGUSTUS	CDS	16882822	16883091	0.13	+	0	transcript_id "Ledus.S2G215700.t1"; gene_id "Ledus.S2G215700"
Ledus.S2	AUGUSTUS	exon	16882822	16883091	.	+	.	transcript_id "Ledus.S2G215700.t1"; gene_id "Ledus.S2G215700"
Ledus.S2	AUGUSTUS	intron	16883092	16883261	.	+	.	transcript_id "Ledus.S2G215700.t1"; gene_id "Ledus.S2G215700"
Ledus.S2	AUGUSTUS	CDS	16883262	16883498	0.71	+	0	transcript_id "Ledus.S2G215700.t1"; gene_id "Ledus.S2G215700"
Ledus.S2	AUGUSTUS	exon	16883262	16883498	.	+	.	transcript_id "Ledus.S2G215700.t1"; gene_id "Ledus.S2G215700"
Ledus.S2	AUGUSTUS	stop_codon	16883499	16883501	.	+	0	transcript_id "Ledus.S2G215700.t1"; gene_id "Ledus.S2G215700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4132.t1 is derived from g1568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14876084	14876999	.	+	.	Ledus.S1G155300
Ledus.S1	AUGUSTUS	transcript	14876084	14876999	.	+	.	transcript_id "Ledus.S1G155300.t1"; gene_id "Ledus.S1G155300"
Ledus.S1	AUGUSTUS	start_codon	14876084	14876086	.	+	0	transcript_id "Ledus.S1G155300.t1"; gene_id "Ledus.S1G155300"
Ledus.S1	AUGUSTUS	CDS	14876084	14876211	0.51	+	0	transcript_id "Ledus.S1G155300.t1"; gene_id "Ledus.S1G155300"
Ledus.S1	AUGUSTUS	exon	14876084	14876211	.	+	.	transcript_id "Ledus.S1G155300.t1"; gene_id "Ledus.S1G155300"
Ledus.S1	AUGUSTUS	intron	14876212	14876298	.	+	.	transcript_id "Ledus.S1G155300.t1"; gene_id "Ledus.S1G155300"
Ledus.S1	AUGUSTUS	CDS	14876299	14876522	0.98	+	1	transcript_id "Ledus.S1G155300.t1"; gene_id "Ledus.S1G155300"
Ledus.S1	AUGUSTUS	exon	14876299	14876522	.	+	.	transcript_id "Ledus.S1G155300.t1"; gene_id "Ledus.S1G155300"
Ledus.S1	AUGUSTUS	intron	14876523	14876607	.	+	.	transcript_id "Ledus.S1G155300.t1"; gene_id "Ledus.S1G155300"
Ledus.S1	AUGUSTUS	CDS	14876608	14876999	0.99	+	2	transcript_id "Ledus.S1G155300.t1"; gene_id "Ledus.S1G155300"
Ledus.S1	AUGUSTUS	exon	14876608	14876999	.	+	.	transcript_id "Ledus.S1G155300.t1"; gene_id "Ledus.S1G155300"
Ledus.S1	AUGUSTUS	stop_codon	14877000	14877002	.	+	0	transcript_id "Ledus.S1G155300.t1"; gene_id "Ledus.S1G155300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10025.t1 is derived from g11055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12001380	12001577	.	-	.	Ledus.S3G150200
Ledus.S3	AUGUSTUS	transcript	12001380	12001577	.	-	.	transcript_id "Ledus.S3G150200.t1"; gene_id "Ledus.S3G150200"
Ledus.S3	AUGUSTUS	stop_codon	12001377	12001379	.	-	0	transcript_id "Ledus.S3G150200.t1"; gene_id "Ledus.S3G150200"
Ledus.S3	AUGUSTUS	CDS	12001380	12001577	0.81	-	0	transcript_id "Ledus.S3G150200.t1"; gene_id "Ledus.S3G150200"
Ledus.S3	AUGUSTUS	exon	12001380	12001577	.	-	.	transcript_id "Ledus.S3G150200.t1"; gene_id "Ledus.S3G150200"
Ledus.S3	AUGUSTUS	start_codon	12001575	12001577	.	-	0	transcript_id "Ledus.S3G150200.t1"; gene_id "Ledus.S3G150200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4632.t1 is derived from g2069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18483856	18485366	.	-	.	Ledus.S1G205300
Ledus.S1	AUGUSTUS	transcript	18483856	18485366	.	-	.	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	stop_codon	18483853	18483855	.	-	0	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	CDS	18483856	18483904	0.96	-	1	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	exon	18483856	18483904	.	-	.	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	intron	18483905	18484012	.	-	.	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	CDS	18484013	18484400	0.81	-	2	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	exon	18484013	18484400	.	-	.	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	intron	18484401	18484574	.	-	.	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	CDS	18484575	18484581	0.31	-	0	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	exon	18484575	18484581	.	-	.	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	intron	18484582	18484710	.	-	.	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	CDS	18484711	18484835	0.92	-	2	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	exon	18484711	18484835	.	-	.	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	intron	18484836	18484924	.	-	.	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	CDS	18484925	18485366	0.36	-	0	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	exon	18484925	18485366	.	-	.	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
Ledus.S1	AUGUSTUS	start_codon	18485364	18485366	.	-	0	transcript_id "Ledus.S1G205300.t1"; gene_id "Ledus.S1G205300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11503.t1 is derived from g5121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4957139	4958883	.	+	.	Ledus.S4G065900
Ledus.S4	AUGUSTUS	transcript	4957139	4958883	.	+	.	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	start_codon	4957139	4957141	.	+	0	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	CDS	4957139	4957369	0.85	+	0	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	exon	4957139	4957369	.	+	.	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	intron	4957370	4957449	.	+	.	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	CDS	4957450	4957627	1	+	0	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	exon	4957450	4957627	.	+	.	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	intron	4957628	4957701	.	+	.	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	CDS	4957702	4957868	1	+	2	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	exon	4957702	4957868	.	+	.	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	intron	4957869	4958282	.	+	.	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	CDS	4958283	4958365	0.74	+	0	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	exon	4958283	4958365	.	+	.	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	intron	4958366	4958504	.	+	.	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	CDS	4958505	4958883	0.89	+	1	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	exon	4958505	4958883	.	+	.	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
Ledus.S4	AUGUSTUS	stop_codon	4958884	4958886	.	+	0	transcript_id "Ledus.S4G065900.t1"; gene_id "Ledus.S4G065900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg3838.t1 is derived from g1274.t5 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12970025	12972560	.	-	.	Ledus.S1G125900
Ledus.S1	AUGUSTUS	transcript	12970025	12972560	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	stop_codon	12970022	12970024	.	-	0	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970025	12970194	1	-	2	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970025	12970194	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970195	12970279	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970280	12970313	1	-	0	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970280	12970313	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970314	12970433	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970434	12970572	0.97	-	1	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970434	12970572	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970573	12970648	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970649	12970673	0.96	-	2	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970649	12970673	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970674	12970763	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970764	12970771	0.96	-	1	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970764	12970771	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970772	12970914	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970915	12971319	0.98	-	1	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970915	12971319	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12971320	12971393	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971394	12971441	0.97	-	1	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971394	12971441	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12971442	12971594	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971595	12971821	1	-	0	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971595	12971821	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12971822	12971909	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971910	12972168	1	-	1	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971910	12972168	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12972169	12972249	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12972250	12972280	1	-	2	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12972250	12972280	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12972281	12972424	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12972425	12972560	0.97	-	0	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12972425	12972560	.	-	.	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	start_codon	12972558	12972560	.	-	0	transcript_id "Ledus.S1G125900.t1"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	transcript	12970025	12972560	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	stop_codon	12970022	12970024	.	-	0	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970025	12970194	0.98	-	2	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970025	12970194	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970195	12970279	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970280	12970313	1	-	0	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970280	12970313	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970314	12970433	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970434	12970572	0.97	-	1	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970434	12970572	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970573	12970646	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970647	12970771	0.98	-	0	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970647	12970771	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970772	12970914	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970915	12970959	0.99	-	0	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970915	12970959	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970960	12971048	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971049	12971319	0.89	-	1	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971049	12971319	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12971320	12971393	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971394	12971441	0.97	-	1	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971394	12971441	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12971442	12971594	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971595	12971821	1	-	0	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971595	12971821	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12971822	12971909	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971910	12972168	1	-	1	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971910	12972168	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12972169	12972249	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12972250	12972280	1	-	2	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12972250	12972280	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12972281	12972424	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12972425	12972560	0.95	-	0	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12972425	12972560	.	-	.	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	start_codon	12972558	12972560	.	-	0	transcript_id "Ledus.S1G125900.t2"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	transcript	12970510	12972560	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	stop_codon	12970507	12970509	.	-	0	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970510	12970572	0.55	-	0	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970510	12970572	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970573	12970648	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970649	12970757	0.92	-	1	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970649	12970757	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970758	12970914	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970915	12971319	0.97	-	1	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970915	12971319	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12971320	12971393	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971394	12971441	0.95	-	1	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971394	12971441	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12971442	12971594	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971595	12971821	1	-	0	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971595	12971821	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12971822	12971909	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971910	12972168	1	-	1	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971910	12972168	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12972169	12972249	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12972250	12972280	1	-	2	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12972250	12972280	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12972281	12972424	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12972425	12972560	0.97	-	0	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12972425	12972560	.	-	.	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	start_codon	12972558	12972560	.	-	0	transcript_id "Ledus.S1G125900.t3"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	transcript	12970510	12972560	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	stop_codon	12970507	12970509	.	-	0	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970510	12970572	0.47	-	0	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970510	12970572	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970573	12970648	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970649	12970775	0.68	-	1	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970649	12970775	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12970776	12970914	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12970915	12971319	0.96	-	1	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12970915	12971319	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12971320	12971393	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971394	12971441	0.99	-	1	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971394	12971441	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12971442	12971594	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971595	12971821	1	-	0	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971595	12971821	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12971822	12971909	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12971910	12972168	1	-	1	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12971910	12972168	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12972169	12972249	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12972250	12972280	1	-	2	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12972250	12972280	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	intron	12972281	12972424	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	CDS	12972425	12972560	0.94	-	0	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	exon	12972425	12972560	.	-	.	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
Ledus.S1	AUGUSTUS	start_codon	12972558	12972560	.	-	0	transcript_id "Ledus.S1G125900.t4"; gene_id "Ledus.S1G125900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg6846.t1 is derived from g4290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34620340	34623905	.	+	.	Ledus.S1G426700
Ledus.S1	AUGUSTUS	transcript	34620340	34623905	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	start_codon	34620340	34620342	.	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34620340	34620438	1	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34620340	34620438	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34620439	34620529	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34620530	34620628	1	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34620530	34620628	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34620629	34620753	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34620754	34620806	0.99	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34620754	34620806	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34620807	34620936	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34620937	34620989	1	+	1	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34620937	34620989	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34620990	34621208	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34621209	34621329	1	+	2	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34621209	34621329	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34621330	34621494	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34621495	34621606	0.99	+	1	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34621495	34621606	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34621607	34621707	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34621708	34621778	1	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34621708	34621778	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34621779	34621910	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34621911	34621980	1	+	1	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34621911	34621980	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34621981	34622178	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34622179	34622241	1	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34622179	34622241	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34622242	34622377	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34622378	34622449	1	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34622378	34622449	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34622450	34622787	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34622788	34622898	1	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34622788	34622898	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34622899	34622997	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34622998	34623072	1	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34622998	34623072	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34623073	34623178	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34623179	34623271	0.99	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34623179	34623271	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34623272	34623371	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34623372	34623488	1	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34623372	34623488	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34623489	34623667	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34623668	34623724	1	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34623668	34623724	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34623725	34623842	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34623843	34623905	1	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34623843	34623905	.	+	.	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	stop_codon	34623906	34623908	.	+	0	transcript_id "Ledus.S1G426700.t1"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	transcript	34620340	34623905	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	start_codon	34620340	34620342	.	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34620340	34620438	0.97	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34620340	34620438	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34620439	34620535	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34620536	34620628	0.94	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34620536	34620628	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34620629	34620753	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34620754	34620806	1	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34620754	34620806	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34620807	34620936	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34620937	34620989	1	+	1	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34620937	34620989	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34620990	34621208	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34621209	34621329	1	+	2	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34621209	34621329	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34621330	34621494	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34621495	34621606	1	+	1	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34621495	34621606	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34621607	34621707	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34621708	34621778	1	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34621708	34621778	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34621779	34621910	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34621911	34621980	1	+	1	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34621911	34621980	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34621981	34622178	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34622179	34622241	1	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34622179	34622241	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34622242	34622377	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34622378	34622449	1	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34622378	34622449	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34622450	34622787	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34622788	34622898	1	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34622788	34622898	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34622899	34622997	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34622998	34623072	0.99	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34622998	34623072	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34623073	34623178	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34623179	34623271	0.98	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34623179	34623271	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34623272	34623371	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34623372	34623488	1	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34623372	34623488	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34623489	34623667	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34623668	34623724	1	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34623668	34623724	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34623725	34623842	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34623843	34623905	1	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34623843	34623905	.	+	.	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	stop_codon	34623906	34623908	.	+	0	transcript_id "Ledus.S1G426700.t2"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	transcript	34620340	34623905	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	start_codon	34620340	34620342	.	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34620340	34620438	0.99	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34620340	34620438	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34620439	34620529	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34620530	34620628	1	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34620530	34620628	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34620629	34620741	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34620742	34620806	0.88	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34620742	34620806	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34620807	34620936	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34620937	34620989	1	+	1	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34620937	34620989	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34620990	34621208	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34621209	34621329	1	+	2	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34621209	34621329	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34621330	34621494	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34621495	34621606	1	+	1	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34621495	34621606	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34621607	34621707	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34621708	34621778	1	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34621708	34621778	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34621779	34621910	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34621911	34621980	1	+	1	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34621911	34621980	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34621981	34622178	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34622179	34622241	1	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34622179	34622241	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34622242	34622377	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34622378	34622449	1	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34622378	34622449	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34622450	34622787	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34622788	34622898	1	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34622788	34622898	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34622899	34622997	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34622998	34623072	1	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34622998	34623072	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34623073	34623178	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34623179	34623271	0.99	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34623179	34623271	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34623272	34623371	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34623372	34623488	1	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34623372	34623488	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34623489	34623667	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34623668	34623724	1	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34623668	34623724	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	intron	34623725	34623842	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	CDS	34623843	34623905	0.98	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	exon	34623843	34623905	.	+	.	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
Ledus.S1	AUGUSTUS	stop_codon	34623906	34623908	.	+	0	transcript_id "Ledus.S1G426700.t3"; gene_id "Ledus.S1G426700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3420.t1 is derived from g855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8176478	8177317	.	+	.	Ledus.S1G084100
Ledus.S1	AUGUSTUS	transcript	8176478	8177317	.	+	.	transcript_id "Ledus.S1G084100.t1"; gene_id "Ledus.S1G084100"
Ledus.S1	AUGUSTUS	start_codon	8176478	8176480	.	+	0	transcript_id "Ledus.S1G084100.t1"; gene_id "Ledus.S1G084100"
Ledus.S1	AUGUSTUS	CDS	8176478	8176519	0.49	+	0	transcript_id "Ledus.S1G084100.t1"; gene_id "Ledus.S1G084100"
Ledus.S1	AUGUSTUS	exon	8176478	8176519	.	+	.	transcript_id "Ledus.S1G084100.t1"; gene_id "Ledus.S1G084100"
Ledus.S1	AUGUSTUS	intron	8176520	8176733	.	+	.	transcript_id "Ledus.S1G084100.t1"; gene_id "Ledus.S1G084100"
Ledus.S1	AUGUSTUS	CDS	8176734	8176846	0.24	+	0	transcript_id "Ledus.S1G084100.t1"; gene_id "Ledus.S1G084100"
Ledus.S1	AUGUSTUS	exon	8176734	8176846	.	+	.	transcript_id "Ledus.S1G084100.t1"; gene_id "Ledus.S1G084100"
Ledus.S1	AUGUSTUS	intron	8176847	8176974	.	+	.	transcript_id "Ledus.S1G084100.t1"; gene_id "Ledus.S1G084100"
Ledus.S1	AUGUSTUS	CDS	8176975	8177317	0.55	+	1	transcript_id "Ledus.S1G084100.t1"; gene_id "Ledus.S1G084100"
Ledus.S1	AUGUSTUS	exon	8176975	8177317	.	+	.	transcript_id "Ledus.S1G084100.t1"; gene_id "Ledus.S1G084100"
Ledus.S1	AUGUSTUS	stop_codon	8177318	8177320	.	+	0	transcript_id "Ledus.S1G084100.t1"; gene_id "Ledus.S1G084100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11715.t1 is derived from g5334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6188069	6189116	.	+	.	Ledus.S4G087100
Ledus.S4	AUGUSTUS	transcript	6188069	6189116	.	+	.	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	start_codon	6188069	6188071	.	+	0	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	CDS	6188069	6188082	0.59	+	0	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	exon	6188069	6188082	.	+	.	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	intron	6188083	6188203	.	+	.	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	CDS	6188204	6188292	0.86	+	1	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	exon	6188204	6188292	.	+	.	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	intron	6188293	6188475	.	+	.	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	CDS	6188476	6188611	0.83	+	2	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	exon	6188476	6188611	.	+	.	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	intron	6188612	6188872	.	+	.	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	CDS	6188873	6189116	0.64	+	1	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	exon	6188873	6189116	.	+	.	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
Ledus.S4	AUGUSTUS	stop_codon	6189117	6189119	.	+	0	transcript_id "Ledus.S4G087100.t1"; gene_id "Ledus.S4G087100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11316.t1 is derived from g4934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3547996	3549995	.	-	.	Ledus.S4G047200
Ledus.S4	AUGUSTUS	transcript	3547996	3549995	.	-	.	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	stop_codon	3547993	3547995	.	-	0	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	CDS	3547996	3548250	1	-	0	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	exon	3547996	3548250	.	-	.	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	intron	3548251	3548340	.	-	.	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	CDS	3548341	3548586	1	-	0	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	exon	3548341	3548586	.	-	.	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	intron	3548587	3548707	.	-	.	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	CDS	3548708	3548984	1	-	1	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	exon	3548708	3548984	.	-	.	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	intron	3548985	3549064	.	-	.	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	CDS	3549065	3549342	1	-	0	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	exon	3549065	3549342	.	-	.	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	intron	3549343	3549416	.	-	.	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	CDS	3549417	3549995	0.99	-	0	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	exon	3549417	3549995	.	-	.	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
Ledus.S4	AUGUSTUS	start_codon	3549993	3549995	.	-	0	transcript_id "Ledus.S4G047200.t1"; gene_id "Ledus.S4G047200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7333.t1 is derived from g12004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1239510	1241420	.	-	.	Ledus.S5G011100
Ledus.S5	AUGUSTUS	transcript	1239510	1241420	.	-	.	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	stop_codon	1239507	1239509	.	-	0	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	CDS	1239510	1240029	0.59	-	1	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	exon	1239510	1240029	.	-	.	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	intron	1240030	1240140	.	-	.	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	CDS	1240141	1240215	0.6	-	1	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	exon	1240141	1240215	.	-	.	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	intron	1240216	1240296	.	-	.	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	CDS	1240297	1240346	1	-	0	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	exon	1240297	1240346	.	-	.	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	intron	1240347	1240494	.	-	.	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	CDS	1240495	1240658	1	-	2	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	exon	1240495	1240658	.	-	.	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	intron	1240659	1240749	.	-	.	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	CDS	1240750	1240922	1	-	1	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	exon	1240750	1240922	.	-	.	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	intron	1240923	1241013	.	-	.	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	CDS	1241014	1241420	1	-	0	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	exon	1241014	1241420	.	-	.	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
Ledus.S5	AUGUSTUS	start_codon	1241418	1241420	.	-	0	transcript_id "Ledus.S5G011100.t1"; gene_id "Ledus.S5G011100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10806.t1 is derived from g11838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17858397	17860229	.	-	.	Ledus.S3G228300
Ledus.S3	AUGUSTUS	transcript	17858397	17860229	.	-	.	transcript_id "Ledus.S3G228300.t1"; gene_id "Ledus.S3G228300"
Ledus.S3	AUGUSTUS	stop_codon	17858394	17858396	.	-	0	transcript_id "Ledus.S3G228300.t1"; gene_id "Ledus.S3G228300"
Ledus.S3	AUGUSTUS	CDS	17858397	17860229	1	-	0	transcript_id "Ledus.S3G228300.t1"; gene_id "Ledus.S3G228300"
Ledus.S3	AUGUSTUS	exon	17858397	17860229	.	-	.	transcript_id "Ledus.S3G228300.t1"; gene_id "Ledus.S3G228300"
Ledus.S3	AUGUSTUS	start_codon	17860227	17860229	.	-	0	transcript_id "Ledus.S3G228300.t1"; gene_id "Ledus.S3G228300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4586.t1 is derived from g2023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17933177	17933815	.	-	.	Ledus.S1G200700
Ledus.S1	AUGUSTUS	transcript	17933177	17933815	.	-	.	transcript_id "Ledus.S1G200700.t1"; gene_id "Ledus.S1G200700"
Ledus.S1	AUGUSTUS	stop_codon	17933174	17933176	.	-	0	transcript_id "Ledus.S1G200700.t1"; gene_id "Ledus.S1G200700"
Ledus.S1	AUGUSTUS	CDS	17933177	17933815	0.8	-	0	transcript_id "Ledus.S1G200700.t1"; gene_id "Ledus.S1G200700"
Ledus.S1	AUGUSTUS	exon	17933177	17933815	.	-	.	transcript_id "Ledus.S1G200700.t1"; gene_id "Ledus.S1G200700"
Ledus.S1	AUGUSTUS	start_codon	17933813	17933815	.	-	0	transcript_id "Ledus.S1G200700.t1"; gene_id "Ledus.S1G200700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5900.t1 is derived from g3343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27690602	27691699	.	-	.	Ledus.S1G332100
Ledus.S1	AUGUSTUS	transcript	27690602	27691699	.	-	.	transcript_id "Ledus.S1G332100.t1"; gene_id "Ledus.S1G332100"
Ledus.S1	AUGUSTUS	stop_codon	27690599	27690601	.	-	0	transcript_id "Ledus.S1G332100.t1"; gene_id "Ledus.S1G332100"
Ledus.S1	AUGUSTUS	CDS	27690602	27691699	0.6	-	0	transcript_id "Ledus.S1G332100.t1"; gene_id "Ledus.S1G332100"
Ledus.S1	AUGUSTUS	exon	27690602	27691699	.	-	.	transcript_id "Ledus.S1G332100.t1"; gene_id "Ledus.S1G332100"
Ledus.S1	AUGUSTUS	start_codon	27691697	27691699	.	-	0	transcript_id "Ledus.S1G332100.t1"; gene_id "Ledus.S1G332100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13045.t1 is derived from g6855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4076595	4077900	.	-	.	Ledus.S6G010700
Ledus.S6	AUGUSTUS	transcript	4076595	4077900	.	-	.	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	stop_codon	4076592	4076594	.	-	0	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	CDS	4076595	4076656	0.6	-	2	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	exon	4076595	4076656	.	-	.	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	intron	4076657	4076753	.	-	.	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	CDS	4076754	4076833	0.65	-	1	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	exon	4076754	4076833	.	-	.	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	intron	4076834	4076914	.	-	.	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	CDS	4076915	4077148	0.97	-	1	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	exon	4076915	4077148	.	-	.	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	intron	4077149	4077283	.	-	.	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	CDS	4077284	4077611	0.95	-	2	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	exon	4077284	4077611	.	-	.	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	intron	4077612	4077734	.	-	.	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	CDS	4077735	4077900	0.76	-	0	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	exon	4077735	4077900	.	-	.	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
Ledus.S6	AUGUSTUS	start_codon	4077898	4077900	.	-	0	transcript_id "Ledus.S6G010700.t1"; gene_id "Ledus.S6G010700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4641.t1 is derived from g2078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18573079	18576331	.	+	.	Ledus.S1G206200
Ledus.S1	AUGUSTUS	transcript	18573079	18576331	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	start_codon	18573079	18573081	.	+	0	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	CDS	18573079	18573088	1	+	0	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	exon	18573079	18573088	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	intron	18573089	18573216	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	CDS	18573217	18573313	1	+	2	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	exon	18573217	18573313	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	intron	18573314	18573425	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	CDS	18573426	18573511	0.99	+	1	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	exon	18573426	18573511	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	intron	18573512	18573772	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	CDS	18573773	18573903	0.99	+	2	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	exon	18573773	18573903	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	intron	18573904	18574179	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	CDS	18574180	18574290	1	+	0	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	exon	18574180	18574290	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	intron	18574291	18574385	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	CDS	18574386	18574639	0.85	+	0	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	exon	18574386	18574639	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	intron	18574640	18574877	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	CDS	18574878	18574940	0.28	+	1	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	exon	18574878	18574940	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	intron	18574941	18575122	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	CDS	18575123	18575193	0.33	+	1	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	exon	18575123	18575193	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	intron	18575194	18575528	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	CDS	18575529	18575627	0.23	+	2	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	exon	18575529	18575627	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	intron	18575628	18575761	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	CDS	18575762	18575850	1	+	2	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	exon	18575762	18575850	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	intron	18575851	18575946	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	CDS	18575947	18576117	1	+	0	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	exon	18575947	18576117	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	intron	18576118	18576208	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	CDS	18576209	18576331	1	+	0	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	exon	18576209	18576331	.	+	.	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
Ledus.S1	AUGUSTUS	stop_codon	18576332	18576334	.	+	0	transcript_id "Ledus.S1G206200.t1"; gene_id "Ledus.S1G206200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13095.t1 is derived from g6905.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5434103	5435110	.	-	.	Ledus.S6G015700
Ledus.S6	AUGUSTUS	transcript	5434103	5435110	.	-	.	transcript_id "Ledus.S6G015700.t1"; gene_id "Ledus.S6G015700"
Ledus.S6	AUGUSTUS	stop_codon	5434100	5434102	.	-	0	transcript_id "Ledus.S6G015700.t1"; gene_id "Ledus.S6G015700"
Ledus.S6	AUGUSTUS	CDS	5434103	5435110	1	-	0	transcript_id "Ledus.S6G015700.t1"; gene_id "Ledus.S6G015700"
Ledus.S6	AUGUSTUS	exon	5434103	5435110	.	-	.	transcript_id "Ledus.S6G015700.t1"; gene_id "Ledus.S6G015700"
Ledus.S6	AUGUSTUS	start_codon	5435108	5435110	.	-	0	transcript_id "Ledus.S6G015700.t1"; gene_id "Ledus.S6G015700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11754.t1 is derived from g5373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6574098	6574474	.	+	.	Ledus.S4G091000
Ledus.S4	AUGUSTUS	transcript	6574098	6574474	.	+	.	transcript_id "Ledus.S4G091000.t1"; gene_id "Ledus.S4G091000"
Ledus.S4	AUGUSTUS	start_codon	6574098	6574100	.	+	0	transcript_id "Ledus.S4G091000.t1"; gene_id "Ledus.S4G091000"
Ledus.S4	AUGUSTUS	CDS	6574098	6574188	0.51	+	0	transcript_id "Ledus.S4G091000.t1"; gene_id "Ledus.S4G091000"
Ledus.S4	AUGUSTUS	exon	6574098	6574188	.	+	.	transcript_id "Ledus.S4G091000.t1"; gene_id "Ledus.S4G091000"
Ledus.S4	AUGUSTUS	intron	6574189	6574276	.	+	.	transcript_id "Ledus.S4G091000.t1"; gene_id "Ledus.S4G091000"
Ledus.S4	AUGUSTUS	CDS	6574277	6574330	1	+	2	transcript_id "Ledus.S4G091000.t1"; gene_id "Ledus.S4G091000"
Ledus.S4	AUGUSTUS	exon	6574277	6574330	.	+	.	transcript_id "Ledus.S4G091000.t1"; gene_id "Ledus.S4G091000"
Ledus.S4	AUGUSTUS	intron	6574331	6574412	.	+	.	transcript_id "Ledus.S4G091000.t1"; gene_id "Ledus.S4G091000"
Ledus.S4	AUGUSTUS	CDS	6574413	6574474	1	+	2	transcript_id "Ledus.S4G091000.t1"; gene_id "Ledus.S4G091000"
Ledus.S4	AUGUSTUS	exon	6574413	6574474	.	+	.	transcript_id "Ledus.S4G091000.t1"; gene_id "Ledus.S4G091000"
Ledus.S4	AUGUSTUS	stop_codon	6574475	6574477	.	+	0	transcript_id "Ledus.S4G091000.t1"; gene_id "Ledus.S4G091000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10367.t1 is derived from g11397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14457169	14460962	.	+	.	Ledus.S3G184400
Ledus.S3	AUGUSTUS	transcript	14457169	14460962	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	start_codon	14457169	14457171	.	+	0	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	CDS	14457169	14459105	0.86	+	0	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	exon	14457169	14459105	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	intron	14459106	14459211	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	CDS	14459212	14459574	0.85	+	1	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	exon	14459212	14459574	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	intron	14459575	14459663	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	CDS	14459664	14459792	0.98	+	1	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	exon	14459664	14459792	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	intron	14459793	14459934	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	CDS	14459935	14460070	1	+	1	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	exon	14459935	14460070	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	intron	14460071	14460240	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	CDS	14460241	14460329	1	+	0	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	exon	14460241	14460329	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	intron	14460330	14460440	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	CDS	14460441	14460552	0.99	+	1	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	exon	14460441	14460552	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	intron	14460553	14460652	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	CDS	14460653	14460759	1	+	0	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	exon	14460653	14460759	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	intron	14460760	14460859	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	CDS	14460860	14460962	0.75	+	1	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	exon	14460860	14460962	.	+	.	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
Ledus.S3	AUGUSTUS	stop_codon	14460963	14460965	.	+	0	transcript_id "Ledus.S3G184400.t1"; gene_id "Ledus.S3G184400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5093.t1 is derived from g2532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21543021	21545791	.	-	.	Ledus.S1G251400
Ledus.S1	AUGUSTUS	transcript	21543021	21545791	.	-	.	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	stop_codon	21543018	21543020	.	-	0	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	CDS	21543021	21543218	0.91	-	0	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	exon	21543021	21543218	.	-	.	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	intron	21543219	21543332	.	-	.	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	CDS	21543333	21544747	0.66	-	2	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	exon	21543333	21544747	.	-	.	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	intron	21544748	21544861	.	-	.	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	CDS	21544862	21545009	0.71	-	0	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	exon	21544862	21545009	.	-	.	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	intron	21545010	21545170	.	-	.	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	CDS	21545171	21545791	0.76	-	0	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	exon	21545171	21545791	.	-	.	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
Ledus.S1	AUGUSTUS	start_codon	21545789	21545791	.	-	0	transcript_id "Ledus.S1G251400.t1"; gene_id "Ledus.S1G251400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4213.t1 is derived from g1649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15597909	15598145	.	+	.	Ledus.S1G163400
Ledus.S1	AUGUSTUS	transcript	15597909	15598145	.	+	.	transcript_id "Ledus.S1G163400.t1"; gene_id "Ledus.S1G163400"
Ledus.S1	AUGUSTUS	start_codon	15597909	15597911	.	+	0	transcript_id "Ledus.S1G163400.t1"; gene_id "Ledus.S1G163400"
Ledus.S1	AUGUSTUS	CDS	15597909	15598145	0.53	+	0	transcript_id "Ledus.S1G163400.t1"; gene_id "Ledus.S1G163400"
Ledus.S1	AUGUSTUS	exon	15597909	15598145	.	+	.	transcript_id "Ledus.S1G163400.t1"; gene_id "Ledus.S1G163400"
Ledus.S1	AUGUSTUS	stop_codon	15598146	15598148	.	+	0	transcript_id "Ledus.S1G163400.t1"; gene_id "Ledus.S1G163400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1446.t1 is derived from g8307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10222123	10222428	.	+	.	Ledus.S2G132800
Ledus.S2	AUGUSTUS	transcript	10222123	10222428	.	+	.	transcript_id "Ledus.S2G132800.t1"; gene_id "Ledus.S2G132800"
Ledus.S2	AUGUSTUS	start_codon	10222123	10222125	.	+	0	transcript_id "Ledus.S2G132800.t1"; gene_id "Ledus.S2G132800"
Ledus.S2	AUGUSTUS	CDS	10222123	10222428	1	+	0	transcript_id "Ledus.S2G132800.t1"; gene_id "Ledus.S2G132800"
Ledus.S2	AUGUSTUS	exon	10222123	10222428	.	+	.	transcript_id "Ledus.S2G132800.t1"; gene_id "Ledus.S2G132800"
Ledus.S2	AUGUSTUS	stop_codon	10222429	10222431	.	+	0	transcript_id "Ledus.S2G132800.t1"; gene_id "Ledus.S2G132800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1996.t1 is derived from g8859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14113062	14114917	.	-	.	Ledus.S2G187800
Ledus.S2	AUGUSTUS	transcript	14113062	14114917	.	-	.	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	stop_codon	14113059	14113061	.	-	0	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	CDS	14113062	14113307	1	-	0	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	exon	14113062	14113307	.	-	.	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	intron	14113308	14113389	.	-	.	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	CDS	14113390	14114344	1	-	1	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	exon	14113390	14114344	.	-	.	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	intron	14114345	14114447	.	-	.	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	CDS	14114448	14114669	0.98	-	1	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	exon	14114448	14114669	.	-	.	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	intron	14114670	14114786	.	-	.	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	CDS	14114787	14114917	0.74	-	0	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	exon	14114787	14114917	.	-	.	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
Ledus.S2	AUGUSTUS	start_codon	14114915	14114917	.	-	0	transcript_id "Ledus.S2G187800.t1"; gene_id "Ledus.S2G187800"
# This transcript jg8132.t2 is derived from g12803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8133.t1 is derived from g12804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9303521	9304411	.	+	.	Ledus.S5G091100
Ledus.S5	AUGUSTUS	transcript	9303521	9304411	.	+	.	transcript_id "Ledus.S5G091100.t1"; gene_id "Ledus.S5G091100"
Ledus.S5	AUGUSTUS	start_codon	9303521	9303523	.	+	0	transcript_id "Ledus.S5G091100.t1"; gene_id "Ledus.S5G091100"
Ledus.S5	AUGUSTUS	CDS	9303521	9303598	0.94	+	0	transcript_id "Ledus.S5G091100.t1"; gene_id "Ledus.S5G091100"
Ledus.S5	AUGUSTUS	exon	9303521	9303598	.	+	.	transcript_id "Ledus.S5G091100.t1"; gene_id "Ledus.S5G091100"
Ledus.S5	AUGUSTUS	intron	9303599	9303679	.	+	.	transcript_id "Ledus.S5G091100.t1"; gene_id "Ledus.S5G091100"
Ledus.S5	AUGUSTUS	CDS	9303680	9304411	0.96	+	0	transcript_id "Ledus.S5G091100.t1"; gene_id "Ledus.S5G091100"
Ledus.S5	AUGUSTUS	exon	9303680	9304411	.	+	.	transcript_id "Ledus.S5G091100.t1"; gene_id "Ledus.S5G091100"
Ledus.S5	AUGUSTUS	stop_codon	9304412	9304414	.	+	0	transcript_id "Ledus.S5G091100.t1"; gene_id "Ledus.S5G091100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9312.t1 is derived from g10342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6003303	6005360	.	+	.	Ledus.S3G078900
Ledus.S3	AUGUSTUS	transcript	6003303	6005360	.	+	.	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	start_codon	6003303	6003305	.	+	0	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	CDS	6003303	6003359	1	+	0	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	exon	6003303	6003359	.	+	.	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	intron	6003360	6003450	.	+	.	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	CDS	6003451	6003730	0.56	+	0	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	exon	6003451	6003730	.	+	.	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	intron	6003731	6003844	.	+	.	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	CDS	6003845	6003987	0.8	+	2	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	exon	6003845	6003987	.	+	.	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	intron	6003988	6004085	.	+	.	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	CDS	6004086	6005360	1	+	0	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	exon	6004086	6005360	.	+	.	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
Ledus.S3	AUGUSTUS	stop_codon	6005361	6005363	.	+	0	transcript_id "Ledus.S3G078900.t1"; gene_id "Ledus.S3G078900"
# This transcript jg904.t2 is derived from g7765.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg904.t3 is derived from g7765.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg905.t1 is derived from g7766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6052175	6054184	.	+	.	Ledus.S2G078700
Ledus.S2	AUGUSTUS	transcript	6052175	6054184	.	+	.	transcript_id "Ledus.S2G078700.t1"; gene_id "Ledus.S2G078700"
Ledus.S2	AUGUSTUS	start_codon	6052175	6052177	.	+	0	transcript_id "Ledus.S2G078700.t1"; gene_id "Ledus.S2G078700"
Ledus.S2	AUGUSTUS	CDS	6052175	6054184	1	+	0	transcript_id "Ledus.S2G078700.t1"; gene_id "Ledus.S2G078700"
Ledus.S2	AUGUSTUS	exon	6052175	6054184	.	+	.	transcript_id "Ledus.S2G078700.t1"; gene_id "Ledus.S2G078700"
Ledus.S2	AUGUSTUS	stop_codon	6054185	6054187	.	+	0	transcript_id "Ledus.S2G078700.t1"; gene_id "Ledus.S2G078700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg123.t1 is derived from g6984.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	50640	54175	.	-	.	Ledus.S2G000500
Ledus.S2	AUGUSTUS	transcript	50640	54175	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	stop_codon	50637	50639	.	-	0	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	50640	50783	0.88	-	0	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	50640	50783	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	50784	50953	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	50954	51059	1	-	1	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	50954	51059	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	51060	51431	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	51432	51529	1	-	0	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	51432	51529	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	51530	51642	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	51643	51707	0.95	-	2	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	51643	51707	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	51708	51831	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	51832	51985	1	-	0	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	51832	51985	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	51986	52475	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	52476	52567	1	-	2	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	52476	52567	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	52568	52807	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	52808	52922	1	-	0	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	52808	52922	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	52923	53090	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	53091	53142	1	-	1	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	53091	53142	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	53143	53405	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	53406	53451	1	-	2	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	53406	53451	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	53452	53598	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	53599	53625	1	-	2	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	53599	53625	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	53626	53765	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	53766	53940	0.97	-	0	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	53766	53940	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	53941	54058	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	54059	54175	0.83	-	0	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	54059	54175	.	-	.	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	start_codon	54173	54175	.	-	0	transcript_id "Ledus.S2G000500.t1"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	transcript	50640	54175	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	stop_codon	50637	50639	.	-	0	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	50640	50783	0.87	-	0	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	50640	50783	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	50784	50953	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	50954	51059	1	-	1	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	50954	51059	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	51060	51431	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	51432	51529	1	-	0	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	51432	51529	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	51530	51642	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	51643	51707	0.97	-	2	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	51643	51707	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	51708	51831	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	51832	51985	1	-	0	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	51832	51985	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	51986	52475	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	52476	52567	1	-	2	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	52476	52567	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	52568	52807	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	52808	52922	1	-	0	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	52808	52922	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	52923	53090	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	53091	53142	1	-	1	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	53091	53142	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	53143	53297	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	53298	53451	0.99	-	2	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	53298	53451	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	53452	53598	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	53599	53625	1	-	2	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	53599	53625	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	53626	53765	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	53766	53940	0.94	-	0	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	53766	53940	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	intron	53941	54058	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	CDS	54059	54175	0.82	-	0	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	exon	54059	54175	.	-	.	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
Ledus.S2	AUGUSTUS	start_codon	54173	54175	.	-	0	transcript_id "Ledus.S2G000500.t2"; gene_id "Ledus.S2G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5324.t1 is derived from g2763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23338131	23339667	.	+	.	Ledus.S1G274500
Ledus.S1	AUGUSTUS	transcript	23338131	23339667	.	+	.	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	start_codon	23338131	23338133	.	+	0	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	CDS	23338131	23338230	0.62	+	0	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	exon	23338131	23338230	.	+	.	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	intron	23338231	23338454	.	+	.	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	CDS	23338455	23338648	0.54	+	2	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	exon	23338455	23338648	.	+	.	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	intron	23338649	23338817	.	+	.	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	CDS	23338818	23338956	0.23	+	0	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	exon	23338818	23338956	.	+	.	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	intron	23338957	23339173	.	+	.	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	CDS	23339174	23339667	0.28	+	2	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	exon	23339174	23339667	.	+	.	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
Ledus.S1	AUGUSTUS	stop_codon	23339668	23339670	.	+	0	transcript_id "Ledus.S1G274500.t1"; gene_id "Ledus.S1G274500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2329.t1 is derived from g9192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17199960	17200835	.	+	.	Ledus.S2G221100
Ledus.S2	AUGUSTUS	transcript	17199960	17200835	.	+	.	transcript_id "Ledus.S2G221100.t1"; gene_id "Ledus.S2G221100"
Ledus.S2	AUGUSTUS	start_codon	17199960	17199962	.	+	0	transcript_id "Ledus.S2G221100.t1"; gene_id "Ledus.S2G221100"
Ledus.S2	AUGUSTUS	CDS	17199960	17200835	0.79	+	0	transcript_id "Ledus.S2G221100.t1"; gene_id "Ledus.S2G221100"
Ledus.S2	AUGUSTUS	exon	17199960	17200835	.	+	.	transcript_id "Ledus.S2G221100.t1"; gene_id "Ledus.S2G221100"
Ledus.S2	AUGUSTUS	stop_codon	17200836	17200838	.	+	0	transcript_id "Ledus.S2G221100.t1"; gene_id "Ledus.S2G221100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3097.t1 is derived from g532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5833345	5834497	.	+	.	Ledus.S1G051800
Ledus.S1	AUGUSTUS	transcript	5833345	5834497	.	+	.	transcript_id "Ledus.S1G051800.t1"; gene_id "Ledus.S1G051800"
Ledus.S1	AUGUSTUS	start_codon	5833345	5833347	.	+	0	transcript_id "Ledus.S1G051800.t1"; gene_id "Ledus.S1G051800"
Ledus.S1	AUGUSTUS	CDS	5833345	5833390	0.98	+	0	transcript_id "Ledus.S1G051800.t1"; gene_id "Ledus.S1G051800"
Ledus.S1	AUGUSTUS	exon	5833345	5833390	.	+	.	transcript_id "Ledus.S1G051800.t1"; gene_id "Ledus.S1G051800"
Ledus.S1	AUGUSTUS	intron	5833391	5833478	.	+	.	transcript_id "Ledus.S1G051800.t1"; gene_id "Ledus.S1G051800"
Ledus.S1	AUGUSTUS	CDS	5833479	5833910	1	+	2	transcript_id "Ledus.S1G051800.t1"; gene_id "Ledus.S1G051800"
Ledus.S1	AUGUSTUS	exon	5833479	5833910	.	+	.	transcript_id "Ledus.S1G051800.t1"; gene_id "Ledus.S1G051800"
Ledus.S1	AUGUSTUS	intron	5833911	5834030	.	+	.	transcript_id "Ledus.S1G051800.t1"; gene_id "Ledus.S1G051800"
Ledus.S1	AUGUSTUS	CDS	5834031	5834497	0.96	+	2	transcript_id "Ledus.S1G051800.t1"; gene_id "Ledus.S1G051800"
Ledus.S1	AUGUSTUS	exon	5834031	5834497	.	+	.	transcript_id "Ledus.S1G051800.t1"; gene_id "Ledus.S1G051800"
Ledus.S1	AUGUSTUS	stop_codon	5834498	5834500	.	+	0	transcript_id "Ledus.S1G051800.t1"; gene_id "Ledus.S1G051800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg806.t1 is derived from g7667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5224421	5228351	.	+	.	Ledus.S2G068800
Ledus.S2	AUGUSTUS	transcript	5224421	5228351	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	start_codon	5224421	5224423	.	+	0	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	CDS	5224421	5224930	0.92	+	0	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	exon	5224421	5224930	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	intron	5224931	5225085	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	CDS	5225086	5225226	1	+	0	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	exon	5225086	5225226	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	intron	5225227	5225308	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	CDS	5225309	5225530	1	+	0	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	exon	5225309	5225530	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	intron	5225531	5225623	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	CDS	5225624	5225797	1	+	0	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	exon	5225624	5225797	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	intron	5225798	5225877	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	CDS	5225878	5225994	1	+	0	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	exon	5225878	5225994	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	intron	5225995	5226086	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	CDS	5226087	5227463	0.96	+	0	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	exon	5226087	5227463	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	intron	5227464	5227541	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	CDS	5227542	5227601	1	+	0	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	exon	5227542	5227601	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	intron	5227602	5227724	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	CDS	5227725	5228351	1	+	0	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	exon	5227725	5228351	.	+	.	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
Ledus.S2	AUGUSTUS	stop_codon	5228352	5228354	.	+	0	transcript_id "Ledus.S2G068800.t1"; gene_id "Ledus.S2G068800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11785.t1 is derived from g5404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6762099	6763706	.	-	.	Ledus.S4G094100
Ledus.S4	AUGUSTUS	transcript	6762099	6763706	.	-	.	transcript_id "Ledus.S4G094100.t1"; gene_id "Ledus.S4G094100"
Ledus.S4	AUGUSTUS	stop_codon	6762096	6762098	.	-	0	transcript_id "Ledus.S4G094100.t1"; gene_id "Ledus.S4G094100"
Ledus.S4	AUGUSTUS	CDS	6762099	6762578	0.95	-	0	transcript_id "Ledus.S4G094100.t1"; gene_id "Ledus.S4G094100"
Ledus.S4	AUGUSTUS	exon	6762099	6762578	.	-	.	transcript_id "Ledus.S4G094100.t1"; gene_id "Ledus.S4G094100"
Ledus.S4	AUGUSTUS	intron	6762579	6762699	.	-	.	transcript_id "Ledus.S4G094100.t1"; gene_id "Ledus.S4G094100"
Ledus.S4	AUGUSTUS	CDS	6762700	6762861	1	-	0	transcript_id "Ledus.S4G094100.t1"; gene_id "Ledus.S4G094100"
Ledus.S4	AUGUSTUS	exon	6762700	6762861	.	-	.	transcript_id "Ledus.S4G094100.t1"; gene_id "Ledus.S4G094100"
Ledus.S4	AUGUSTUS	intron	6762862	6763145	.	-	.	transcript_id "Ledus.S4G094100.t1"; gene_id "Ledus.S4G094100"
Ledus.S4	AUGUSTUS	CDS	6763146	6763706	0.72	-	0	transcript_id "Ledus.S4G094100.t1"; gene_id "Ledus.S4G094100"
Ledus.S4	AUGUSTUS	exon	6763146	6763706	.	-	.	transcript_id "Ledus.S4G094100.t1"; gene_id "Ledus.S4G094100"
Ledus.S4	AUGUSTUS	start_codon	6763704	6763706	.	-	0	transcript_id "Ledus.S4G094100.t1"; gene_id "Ledus.S4G094100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9794.t1 is derived from g10824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9857723	9858064	.	-	.	Ledus.S3G127100
Ledus.S3	AUGUSTUS	transcript	9857723	9858064	.	-	.	transcript_id "Ledus.S3G127100.t1"; gene_id "Ledus.S3G127100"
Ledus.S3	AUGUSTUS	stop_codon	9857720	9857722	.	-	0	transcript_id "Ledus.S3G127100.t1"; gene_id "Ledus.S3G127100"
Ledus.S3	AUGUSTUS	CDS	9857723	9858064	0.51	-	0	transcript_id "Ledus.S3G127100.t1"; gene_id "Ledus.S3G127100"
Ledus.S3	AUGUSTUS	exon	9857723	9858064	.	-	.	transcript_id "Ledus.S3G127100.t1"; gene_id "Ledus.S3G127100"
Ledus.S3	AUGUSTUS	start_codon	9858062	9858064	.	-	0	transcript_id "Ledus.S3G127100.t1"; gene_id "Ledus.S3G127100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg772.t1 is derived from g7633.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4901785	4902633	.	-	.	Ledus.S2G065400
Ledus.S2	AUGUSTUS	transcript	4901785	4902633	.	-	.	transcript_id "Ledus.S2G065400.t1"; gene_id "Ledus.S2G065400"
Ledus.S2	AUGUSTUS	stop_codon	4901782	4901784	.	-	0	transcript_id "Ledus.S2G065400.t1"; gene_id "Ledus.S2G065400"
Ledus.S2	AUGUSTUS	CDS	4901785	4902633	0.96	-	0	transcript_id "Ledus.S2G065400.t1"; gene_id "Ledus.S2G065400"
Ledus.S2	AUGUSTUS	exon	4901785	4902633	.	-	.	transcript_id "Ledus.S2G065400.t1"; gene_id "Ledus.S2G065400"
Ledus.S2	AUGUSTUS	start_codon	4902631	4902633	.	-	0	transcript_id "Ledus.S2G065400.t1"; gene_id "Ledus.S2G065400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4129.t1 is derived from g1565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14847442	14848498	.	-	.	Ledus.S1G155000
Ledus.S1	AUGUSTUS	transcript	14847442	14848498	.	-	.	transcript_id "Ledus.S1G155000.t1"; gene_id "Ledus.S1G155000"
Ledus.S1	AUGUSTUS	stop_codon	14847439	14847441	.	-	0	transcript_id "Ledus.S1G155000.t1"; gene_id "Ledus.S1G155000"
Ledus.S1	AUGUSTUS	CDS	14847442	14847948	1	-	0	transcript_id "Ledus.S1G155000.t1"; gene_id "Ledus.S1G155000"
Ledus.S1	AUGUSTUS	exon	14847442	14847948	.	-	.	transcript_id "Ledus.S1G155000.t1"; gene_id "Ledus.S1G155000"
Ledus.S1	AUGUSTUS	intron	14847949	14848042	.	-	.	transcript_id "Ledus.S1G155000.t1"; gene_id "Ledus.S1G155000"
Ledus.S1	AUGUSTUS	CDS	14848043	14848204	1	-	0	transcript_id "Ledus.S1G155000.t1"; gene_id "Ledus.S1G155000"
Ledus.S1	AUGUSTUS	exon	14848043	14848204	.	-	.	transcript_id "Ledus.S1G155000.t1"; gene_id "Ledus.S1G155000"
Ledus.S1	AUGUSTUS	intron	14848205	14848375	.	-	.	transcript_id "Ledus.S1G155000.t1"; gene_id "Ledus.S1G155000"
Ledus.S1	AUGUSTUS	CDS	14848376	14848498	0.69	-	0	transcript_id "Ledus.S1G155000.t1"; gene_id "Ledus.S1G155000"
Ledus.S1	AUGUSTUS	exon	14848376	14848498	.	-	.	transcript_id "Ledus.S1G155000.t1"; gene_id "Ledus.S1G155000"
Ledus.S1	AUGUSTUS	start_codon	14848496	14848498	.	-	0	transcript_id "Ledus.S1G155000.t1"; gene_id "Ledus.S1G155000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8557.t1 is derived from g9587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	161086	162884	.	-	.	Ledus.S3G003400
Ledus.S3	AUGUSTUS	transcript	161086	162884	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	stop_codon	161083	161085	.	-	0	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	161086	161181	1	-	0	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	161086	161181	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	intron	161182	161266	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	161267	161421	1	-	2	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	161267	161421	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	intron	161422	161526	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	161527	161690	1	-	1	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	161527	161690	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	intron	161691	161811	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	161812	161933	1	-	0	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	161812	161933	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	intron	161934	162087	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	162088	162303	1	-	0	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	162088	162303	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	intron	162304	162388	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	162389	162535	1	-	0	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	162389	162535	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	intron	162536	162611	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	162612	162884	0.78	-	0	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	162612	162884	.	-	.	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	start_codon	162882	162884	.	-	0	transcript_id "Ledus.S3G003400.t1"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	transcript	161086	162884	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	stop_codon	161083	161085	.	-	0	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	161086	161181	0.99	-	0	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	161086	161181	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	intron	161182	161266	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	161267	161421	1	-	2	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	161267	161421	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	intron	161422	161526	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	161527	161690	1	-	1	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	161527	161690	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	intron	161691	161811	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	161812	161933	1	-	0	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	161812	161933	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	intron	161934	162087	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	162088	162303	1	-	0	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	162088	162303	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	intron	162304	162388	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	162389	162535	1	-	0	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	162389	162535	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	intron	162536	162686	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	CDS	162687	162884	0.71	-	0	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	exon	162687	162884	.	-	.	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
Ledus.S3	AUGUSTUS	start_codon	162882	162884	.	-	0	transcript_id "Ledus.S3G003400.t2"; gene_id "Ledus.S3G003400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4039.t1 is derived from g1475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14281933	14283568	.	+	.	Ledus.S1G146000
Ledus.S1	AUGUSTUS	transcript	14281933	14283568	.	+	.	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	start_codon	14281933	14281935	.	+	0	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	CDS	14281933	14282017	0.8	+	0	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	exon	14281933	14282017	.	+	.	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	intron	14282018	14282499	.	+	.	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	CDS	14282500	14282505	0.93	+	2	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	exon	14282500	14282505	.	+	.	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	intron	14282506	14282591	.	+	.	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	CDS	14282592	14282662	0.93	+	2	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	exon	14282592	14282662	.	+	.	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	intron	14282663	14282745	.	+	.	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	CDS	14282746	14282882	1	+	0	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	exon	14282746	14282882	.	+	.	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	intron	14282883	14282960	.	+	.	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	CDS	14282961	14283282	1	+	1	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	exon	14282961	14283282	.	+	.	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	intron	14283283	14283361	.	+	.	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	CDS	14283362	14283568	1	+	0	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	exon	14283362	14283568	.	+	.	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
Ledus.S1	AUGUSTUS	stop_codon	14283569	14283571	.	+	0	transcript_id "Ledus.S1G146000.t1"; gene_id "Ledus.S1G146000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1326.t1 is derived from g8187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9285672	9286841	.	-	.	Ledus.S2G120800
Ledus.S2	AUGUSTUS	transcript	9285672	9286841	.	-	.	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	stop_codon	9285669	9285671	.	-	0	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	CDS	9285672	9285851	0.91	-	0	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	exon	9285672	9285851	.	-	.	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	intron	9285852	9285957	.	-	.	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	CDS	9285958	9286066	0.95	-	1	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	exon	9285958	9286066	.	-	.	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	intron	9286067	9286150	.	-	.	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	CDS	9286151	9286216	1	-	1	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	exon	9286151	9286216	.	-	.	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	intron	9286217	9286315	.	-	.	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	CDS	9286316	9286734	1	-	0	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	exon	9286316	9286734	.	-	.	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	intron	9286735	9286832	.	-	.	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	CDS	9286833	9286841	1	-	0	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	exon	9286833	9286841	.	-	.	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
Ledus.S2	AUGUSTUS	start_codon	9286839	9286841	.	-	0	transcript_id "Ledus.S2G120800.t1"; gene_id "Ledus.S2G120800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2278.t1 is derived from g9141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16902996	16904009	.	-	.	Ledus.S2G216000
Ledus.S2	AUGUSTUS	transcript	16902996	16904009	.	-	.	transcript_id "Ledus.S2G216000.t1"; gene_id "Ledus.S2G216000"
Ledus.S2	AUGUSTUS	stop_codon	16902993	16902995	.	-	0	transcript_id "Ledus.S2G216000.t1"; gene_id "Ledus.S2G216000"
Ledus.S2	AUGUSTUS	CDS	16902996	16904009	0.96	-	0	transcript_id "Ledus.S2G216000.t1"; gene_id "Ledus.S2G216000"
Ledus.S2	AUGUSTUS	exon	16902996	16904009	.	-	.	transcript_id "Ledus.S2G216000.t1"; gene_id "Ledus.S2G216000"
Ledus.S2	AUGUSTUS	start_codon	16904007	16904009	.	-	0	transcript_id "Ledus.S2G216000.t1"; gene_id "Ledus.S2G216000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10084.t1 is derived from g11114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12562287	12564716	.	-	.	Ledus.S3G156100
Ledus.S3	AUGUSTUS	transcript	12562287	12564716	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	stop_codon	12562284	12562286	.	-	0	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	CDS	12562287	12562373	0.73	-	0	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	exon	12562287	12562373	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	intron	12562374	12562499	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	CDS	12562500	12562551	1	-	1	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	exon	12562500	12562551	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	intron	12562552	12562651	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	CDS	12562652	12562720	1	-	1	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	exon	12562652	12562720	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	intron	12562721	12562799	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	CDS	12562800	12562858	1	-	0	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	exon	12562800	12562858	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	intron	12562859	12562954	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	CDS	12562955	12563026	1	-	0	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	exon	12562955	12563026	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	intron	12563027	12563171	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	CDS	12563172	12563265	1	-	1	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	exon	12563172	12563265	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	intron	12563266	12563343	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	CDS	12563344	12563389	1	-	2	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	exon	12563344	12563389	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	intron	12563390	12563513	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	CDS	12563514	12563613	1	-	0	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	exon	12563514	12563613	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	intron	12563614	12563768	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	CDS	12563769	12564140	0.98	-	0	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	exon	12563769	12564140	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	intron	12564141	12564246	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	CDS	12564247	12564372	0.99	-	0	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	exon	12564247	12564372	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	intron	12564373	12564448	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	CDS	12564449	12564496	1	-	0	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	exon	12564449	12564496	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	intron	12564497	12564581	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	CDS	12564582	12564716	0.98	-	0	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	exon	12564582	12564716	.	-	.	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
Ledus.S3	AUGUSTUS	start_codon	12564714	12564716	.	-	0	transcript_id "Ledus.S3G156100.t1"; gene_id "Ledus.S3G156100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7448.t1 is derived from g12119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2764047	2770359	.	-	.	Ledus.S5G022600
Ledus.S5	AUGUSTUS	transcript	2764047	2770359	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	stop_codon	2764044	2764046	.	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2764047	2764085	1	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2764047	2764085	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2764086	2764258	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2764259	2764281	1	-	2	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2764259	2764281	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2764282	2764352	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2764353	2764540	0.52	-	1	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2764353	2764540	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2764541	2764635	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2764636	2764706	1	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2764636	2764706	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2764707	2764794	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2764795	2764861	1	-	1	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2764795	2764861	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2764862	2764947	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2764948	2765016	0.99	-	1	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2764948	2765016	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2765017	2765118	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2765119	2765269	0.99	-	2	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2765119	2765269	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2765270	2765414	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2765415	2765490	1	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2765415	2765490	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2765491	2765639	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2765640	2765743	1	-	2	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2765640	2765743	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2765744	2765840	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2765841	2765937	1	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2765841	2765937	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2765938	2766026	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2766027	2766113	1	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2766027	2766113	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2766114	2766237	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2766238	2766324	1	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2766238	2766324	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2766325	2766467	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2766468	2766557	1	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2766468	2766557	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2766558	2766685	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2766686	2766763	1	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2766686	2766763	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2766764	2766912	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2766913	2767077	1	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2766913	2767077	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2767078	2767239	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2767240	2767390	1	-	1	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2767240	2767390	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2767391	2767611	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2767612	2767889	0.96	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2767612	2767889	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2767890	2768033	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2768034	2768195	1	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2768034	2768195	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2768196	2768288	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2768289	2768391	1	-	1	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2768289	2768391	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2768392	2768489	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2768490	2768593	1	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2768490	2768593	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2768594	2768688	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2768689	2768760	1	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2768689	2768760	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2768761	2769008	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2769009	2769102	0.81	-	1	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2769009	2769102	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2769103	2769437	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2769438	2769471	0.44	-	2	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2769438	2769471	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2769472	2769614	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2769615	2769664	0.76	-	1	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2769615	2769664	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2769665	2769805	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2769806	2769921	0.82	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2769806	2769921	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2769922	2769994	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2769995	2770090	0.84	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2769995	2770090	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	intron	2770091	2770215	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	CDS	2770216	2770359	0.68	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	exon	2770216	2770359	.	-	.	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
Ledus.S5	AUGUSTUS	start_codon	2770357	2770359	.	-	0	transcript_id "Ledus.S5G022600.t1"; gene_id "Ledus.S5G022600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12790.t1 is derived from g6412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14549655	14551258	.	+	.	Ledus.S4G194600
Ledus.S4	AUGUSTUS	transcript	14549655	14551258	.	+	.	transcript_id "Ledus.S4G194600.t1"; gene_id "Ledus.S4G194600"
Ledus.S4	AUGUSTUS	start_codon	14549655	14549657	.	+	0	transcript_id "Ledus.S4G194600.t1"; gene_id "Ledus.S4G194600"
Ledus.S4	AUGUSTUS	CDS	14549655	14550379	0.7	+	0	transcript_id "Ledus.S4G194600.t1"; gene_id "Ledus.S4G194600"
Ledus.S4	AUGUSTUS	exon	14549655	14550379	.	+	.	transcript_id "Ledus.S4G194600.t1"; gene_id "Ledus.S4G194600"
Ledus.S4	AUGUSTUS	intron	14550380	14550807	.	+	.	transcript_id "Ledus.S4G194600.t1"; gene_id "Ledus.S4G194600"
Ledus.S4	AUGUSTUS	CDS	14550808	14551258	0.61	+	1	transcript_id "Ledus.S4G194600.t1"; gene_id "Ledus.S4G194600"
Ledus.S4	AUGUSTUS	exon	14550808	14551258	.	+	.	transcript_id "Ledus.S4G194600.t1"; gene_id "Ledus.S4G194600"
Ledus.S4	AUGUSTUS	stop_codon	14551259	14551261	.	+	0	transcript_id "Ledus.S4G194600.t1"; gene_id "Ledus.S4G194600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg1771.t1 is derived from g8635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12429062	12430261	.	+	.	Ledus.S2G165400
Ledus.S2	AUGUSTUS	transcript	12429062	12430261	.	+	.	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	start_codon	12429062	12429064	.	+	0	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	CDS	12429062	12429406	0.47	+	0	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	exon	12429062	12429406	.	+	.	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	intron	12429407	12429702	.	+	.	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	CDS	12429703	12429753	1	+	0	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	exon	12429703	12429753	.	+	.	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	intron	12429754	12429927	.	+	.	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	CDS	12429928	12429994	1	+	0	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	exon	12429928	12429994	.	+	.	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	intron	12429995	12430160	.	+	.	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	CDS	12430161	12430261	1	+	2	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	exon	12430161	12430261	.	+	.	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	stop_codon	12430262	12430264	.	+	0	transcript_id "Ledus.S2G165400.t1"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	transcript	12429062	12430261	.	+	.	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	start_codon	12429062	12429064	.	+	0	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	CDS	12429062	12429406	0.43	+	0	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	exon	12429062	12429406	.	+	.	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	intron	12429407	12429702	.	+	.	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	CDS	12429703	12429753	1	+	0	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	exon	12429703	12429753	.	+	.	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	intron	12429754	12429924	.	+	.	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	CDS	12429925	12429994	1	+	0	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	exon	12429925	12429994	.	+	.	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	intron	12429995	12430160	.	+	.	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	CDS	12430161	12430261	1	+	2	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	exon	12430161	12430261	.	+	.	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
Ledus.S2	AUGUSTUS	stop_codon	12430262	12430264	.	+	0	transcript_id "Ledus.S2G165400.t2"; gene_id "Ledus.S2G165400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3159.t1 is derived from g594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6399991	6403219	.	-	.	Ledus.S1G058000
Ledus.S1	AUGUSTUS	transcript	6399991	6403219	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	stop_codon	6399988	6399990	.	-	0	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	CDS	6399991	6400215	0.62	-	0	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	exon	6399991	6400215	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	intron	6400216	6400383	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	CDS	6400384	6400644	0.85	-	0	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	exon	6400384	6400644	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	intron	6400645	6400754	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	CDS	6400755	6400873	1	-	2	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	exon	6400755	6400873	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	intron	6400874	6401029	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	CDS	6401030	6401389	0.99	-	2	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	exon	6401030	6401389	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	intron	6401390	6401613	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	CDS	6401614	6401775	1	-	2	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	exon	6401614	6401775	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	intron	6401776	6401941	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	CDS	6401942	6401986	1	-	2	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	exon	6401942	6401986	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	intron	6401987	6402145	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	CDS	6402146	6402724	0.88	-	2	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	exon	6402146	6402724	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	intron	6402725	6402859	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	CDS	6402860	6402983	0.55	-	0	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	exon	6402860	6402983	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	intron	6402984	6403075	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	CDS	6403076	6403219	0.91	-	0	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	exon	6403076	6403219	.	-	.	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
Ledus.S1	AUGUSTUS	start_codon	6403217	6403219	.	-	0	transcript_id "Ledus.S1G058000.t1"; gene_id "Ledus.S1G058000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2870.t1 is derived from g304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4297884	4298720	.	+	.	Ledus.S1G029100
Ledus.S1	AUGUSTUS	transcript	4297884	4298720	.	+	.	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	start_codon	4297884	4297886	.	+	0	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	CDS	4297884	4297914	0.73	+	0	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	exon	4297884	4297914	.	+	.	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	intron	4297915	4297999	.	+	.	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	CDS	4298000	4298081	1	+	2	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	exon	4298000	4298081	.	+	.	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	intron	4298082	4298161	.	+	.	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	CDS	4298162	4298333	1	+	1	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	exon	4298162	4298333	.	+	.	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	intron	4298334	4298465	.	+	.	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	CDS	4298466	4298535	1	+	0	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	exon	4298466	4298535	.	+	.	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	intron	4298536	4298616	.	+	.	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	CDS	4298617	4298720	1	+	2	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	exon	4298617	4298720	.	+	.	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
Ledus.S1	AUGUSTUS	stop_codon	4298721	4298723	.	+	0	transcript_id "Ledus.S1G029100.t1"; gene_id "Ledus.S1G029100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3171.t1 is derived from g606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6561498	6566423	.	+	.	Ledus.S1G059200
Ledus.S1	AUGUSTUS	transcript	6561498	6566423	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	start_codon	6561498	6561500	.	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6561498	6561563	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6561498	6561563	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6561564	6561663	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6561664	6561688	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6561664	6561688	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6561689	6561977	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6561978	6562054	0.95	+	2	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6561978	6562054	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6562055	6562132	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6562133	6562203	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6562133	6562203	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6562204	6562276	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6562277	6562322	1	+	1	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6562277	6562322	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6562323	6562519	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6562520	6562625	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6562520	6562625	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6562626	6562699	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6562700	6562842	1	+	2	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6562700	6562842	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6562843	6562925	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6562926	6563036	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6562926	6563036	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6563037	6563171	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6563172	6563335	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6563172	6563335	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6563336	6563473	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6563474	6563852	1	+	1	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6563474	6563852	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6563853	6563941	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6563942	6564050	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6563942	6564050	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6564051	6564251	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6564252	6564391	1	+	2	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6564252	6564391	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6564392	6564545	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6564546	6564683	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6564546	6564683	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6564684	6564777	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6564778	6564869	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6564778	6564869	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6564870	6565041	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6565042	6565171	1	+	1	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6565042	6565171	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6565172	6565266	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6565267	6565425	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6565267	6565425	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6565426	6565522	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6565523	6565693	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6565523	6565693	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6565694	6565769	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6565770	6565904	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6565770	6565904	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6565905	6566013	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6566014	6566085	1	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6566014	6566085	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	intron	6566086	6566204	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	CDS	6566205	6566423	0.99	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	exon	6566205	6566423	.	+	.	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
Ledus.S1	AUGUSTUS	stop_codon	6566424	6566426	.	+	0	transcript_id "Ledus.S1G059200.t1"; gene_id "Ledus.S1G059200"
# This transcript jg10479.t2 is derived from g11509.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10480.t1 is derived from g11510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15524679	15528098	.	+	.	Ledus.S3G195700
Ledus.S3	AUGUSTUS	transcript	15524679	15528098	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	start_codon	15524679	15524681	.	+	0	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15524679	15525025	0.49	+	0	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15524679	15525025	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15525026	15525214	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15525215	15525300	1	+	1	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15525215	15525300	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15525301	15525526	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15525527	15525666	1	+	2	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15525527	15525666	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15525667	15525810	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15525811	15525921	1	+	0	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15525811	15525921	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15525922	15526031	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15526032	15526130	0.97	+	0	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15526032	15526130	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15526131	15526238	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15526239	15526361	1	+	0	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15526239	15526361	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15526362	15526543	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15526544	15526606	0.99	+	0	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15526544	15526606	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15526607	15526708	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15526709	15526773	0.98	+	0	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15526709	15526773	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15526774	15526891	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15526892	15527001	0.99	+	1	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15526892	15527001	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15527002	15527263	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15527264	15527378	1	+	2	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15527264	15527378	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15527379	15527488	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15527489	15527554	1	+	1	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15527489	15527554	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15527555	15527640	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15527641	15527751	1	+	1	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15527641	15527751	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15527752	15527886	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15527887	15527953	1	+	1	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15527887	15527953	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	intron	15527954	15528053	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	CDS	15528054	15528098	0.99	+	0	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	exon	15528054	15528098	.	+	.	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
Ledus.S3	AUGUSTUS	stop_codon	15528099	15528101	.	+	0	transcript_id "Ledus.S3G195700.t1"; gene_id "Ledus.S3G195700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5071.t1 is derived from g2510.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21452578	21459725	.	+	.	Ledus.S1G249200
Ledus.S1	AUGUSTUS	transcript	21452578	21459725	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	start_codon	21452578	21452580	.	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21452578	21452763	0.78	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21452578	21452763	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21452764	21452922	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21452923	21452972	1	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21452923	21452972	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21452973	21453157	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21453158	21453218	1	+	1	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21453158	21453218	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21453219	21453407	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21453408	21453503	1	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21453408	21453503	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21453504	21453659	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21453660	21453809	1	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21453660	21453809	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21453810	21453927	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21453928	21454059	1	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21453928	21454059	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21454060	21454376	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21454377	21454504	1	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21454377	21454504	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21454505	21454642	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21454643	21454685	1	+	1	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21454643	21454685	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21454686	21454927	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21454928	21455011	1	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21454928	21455011	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21455012	21455150	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21455151	21455192	1	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21455151	21455192	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21455193	21455306	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21455307	21455377	1	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21455307	21455377	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21455378	21455485	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21455486	21455539	1	+	1	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21455486	21455539	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21455540	21455625	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21455626	21455731	1	+	1	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21455626	21455731	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21455732	21455831	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21455832	21455900	1	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21455832	21455900	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21455901	21456024	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21456025	21456280	0.58	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21456025	21456280	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21456281	21456432	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21456433	21456793	0.85	+	2	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21456433	21456793	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21456794	21456861	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21456862	21457040	1	+	1	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21456862	21457040	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21457041	21457112	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21457113	21457246	1	+	2	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21457113	21457246	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21457247	21457324	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21457325	21457465	0.94	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21457325	21457465	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21457466	21457578	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21457579	21458003	0.95	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21457579	21458003	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21458004	21458104	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21458105	21458441	1	+	1	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21458105	21458441	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21458442	21458531	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21458532	21458790	1	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21458532	21458790	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21458791	21458869	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21458870	21459003	1	+	2	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21458870	21459003	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21459004	21459088	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21459089	21459315	1	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21459089	21459315	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21459316	21459420	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21459421	21459531	1	+	1	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21459421	21459531	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21459532	21459667	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21459668	21459725	1	+	1	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21459668	21459725	.	+	.	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	stop_codon	21459726	21459728	.	+	0	transcript_id "Ledus.S1G249200.t1"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	transcript	21452578	21459725	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	start_codon	21452578	21452580	.	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21452578	21452763	0.69	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21452578	21452763	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21452764	21452922	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21452923	21452972	1	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21452923	21452972	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21452973	21453157	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21453158	21453218	1	+	1	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21453158	21453218	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21453219	21453407	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21453408	21453503	1	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21453408	21453503	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21453504	21453659	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21453660	21453809	0.96	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21453660	21453809	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21453810	21453927	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21453928	21454059	1	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21453928	21454059	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21454060	21454376	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21454377	21454504	1	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21454377	21454504	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21454505	21454642	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21454643	21454685	1	+	1	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21454643	21454685	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21454686	21454927	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21454928	21455011	1	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21454928	21455011	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21455012	21455150	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21455151	21455192	1	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21455151	21455192	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21455193	21455306	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21455307	21455377	1	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21455307	21455377	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21455378	21455485	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21455486	21455539	0.99	+	1	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21455486	21455539	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21455540	21455625	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21455626	21455731	1	+	1	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21455626	21455731	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21455732	21455831	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21455832	21455900	1	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21455832	21455900	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21455901	21456024	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21456025	21456280	0.46	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21456025	21456280	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21456281	21456432	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21456433	21456793	0.83	+	2	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21456433	21456793	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21456794	21456861	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21456862	21457040	1	+	1	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21456862	21457040	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21457041	21457112	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21457113	21457246	1	+	2	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21457113	21457246	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21457247	21457444	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21457445	21457465	0.42	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21457445	21457465	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21457466	21457578	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21457579	21458003	0.57	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21457579	21458003	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21458004	21458104	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21458105	21458441	1	+	1	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21458105	21458441	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21458442	21458531	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21458532	21458790	1	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21458532	21458790	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21458791	21458869	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21458870	21459003	1	+	2	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21458870	21459003	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21459004	21459088	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21459089	21459315	1	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21459089	21459315	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21459316	21459420	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21459421	21459531	1	+	1	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21459421	21459531	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	intron	21459532	21459667	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	CDS	21459668	21459725	1	+	1	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	exon	21459668	21459725	.	+	.	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
Ledus.S1	AUGUSTUS	stop_codon	21459726	21459728	.	+	0	transcript_id "Ledus.S1G249200.t2"; gene_id "Ledus.S1G249200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7078.t1 is derived from g6609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1285973	1290016	.	+	.	Ledus.C7G013900
Ledus.C7	AUGUSTUS	transcript	1285973	1290016	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	start_codon	1285973	1285975	.	+	0	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1285973	1286003	0.99	+	0	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1285973	1286003	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1286004	1286112	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1286113	1286180	0.99	+	2	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1286113	1286180	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1286181	1286272	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1286273	1286332	1	+	0	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1286273	1286332	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1286333	1286424	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1286425	1286639	1	+	0	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1286425	1286639	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1286640	1286736	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1286737	1286914	0.94	+	1	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1286737	1286914	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1286915	1287021	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1287022	1287144	0.99	+	0	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1287022	1287144	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1287145	1287312	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1287313	1287402	1	+	0	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1287313	1287402	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1287403	1287494	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1287495	1287637	1	+	0	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1287495	1287637	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1287638	1287942	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1287943	1288117	1	+	1	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1287943	1288117	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1288118	1288369	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1288370	1288561	1	+	0	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1288370	1288561	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1288562	1288768	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1288769	1288941	0.93	+	0	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1288769	1288941	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1288942	1289046	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1289047	1289250	0.99	+	1	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1289047	1289250	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1289251	1289334	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1289335	1289500	1	+	1	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1289335	1289500	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1289501	1289605	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1289606	1289827	1	+	0	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1289606	1289827	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	intron	1289828	1289914	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	CDS	1289915	1290016	1	+	0	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	exon	1289915	1290016	.	+	.	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
Ledus.C7	AUGUSTUS	stop_codon	1290017	1290019	.	+	0	transcript_id "Ledus.C7G013900.t1"; gene_id "Ledus.C7G013900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7957.t1 is derived from g12628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8140418	8140711	.	-	.	Ledus.S5G073500
Ledus.S5	AUGUSTUS	transcript	8140418	8140711	.	-	.	transcript_id "Ledus.S5G073500.t1"; gene_id "Ledus.S5G073500"
Ledus.S5	AUGUSTUS	stop_codon	8140415	8140417	.	-	0	transcript_id "Ledus.S5G073500.t1"; gene_id "Ledus.S5G073500"
Ledus.S5	AUGUSTUS	CDS	8140418	8140711	0.64	-	0	transcript_id "Ledus.S5G073500.t1"; gene_id "Ledus.S5G073500"
Ledus.S5	AUGUSTUS	exon	8140418	8140711	.	-	.	transcript_id "Ledus.S5G073500.t1"; gene_id "Ledus.S5G073500"
Ledus.S5	AUGUSTUS	start_codon	8140709	8140711	.	-	0	transcript_id "Ledus.S5G073500.t1"; gene_id "Ledus.S5G073500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10020.t1 is derived from g11050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11910576	11911009	.	+	.	Ledus.S3G149700
Ledus.S3	AUGUSTUS	transcript	11910576	11911009	.	+	.	transcript_id "Ledus.S3G149700.t1"; gene_id "Ledus.S3G149700"
Ledus.S3	AUGUSTUS	start_codon	11910576	11910578	.	+	0	transcript_id "Ledus.S3G149700.t1"; gene_id "Ledus.S3G149700"
Ledus.S3	AUGUSTUS	CDS	11910576	11910822	0.58	+	0	transcript_id "Ledus.S3G149700.t1"; gene_id "Ledus.S3G149700"
Ledus.S3	AUGUSTUS	exon	11910576	11910822	.	+	.	transcript_id "Ledus.S3G149700.t1"; gene_id "Ledus.S3G149700"
Ledus.S3	AUGUSTUS	intron	11910823	11910932	.	+	.	transcript_id "Ledus.S3G149700.t1"; gene_id "Ledus.S3G149700"
Ledus.S3	AUGUSTUS	CDS	11910933	11911009	0.6	+	2	transcript_id "Ledus.S3G149700.t1"; gene_id "Ledus.S3G149700"
Ledus.S3	AUGUSTUS	exon	11910933	11911009	.	+	.	transcript_id "Ledus.S3G149700.t1"; gene_id "Ledus.S3G149700"
Ledus.S3	AUGUSTUS	stop_codon	11911010	11911012	.	+	0	transcript_id "Ledus.S3G149700.t1"; gene_id "Ledus.S3G149700"
# This transcript jg4653.t2 is derived from g2091.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4654.t1 is derived from g2092.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18720692	18722264	.	+	.	Ledus.S1G207500
Ledus.S1	AUGUSTUS	transcript	18720692	18722264	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	start_codon	18720692	18720694	.	+	0	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	CDS	18720692	18720841	0.42	+	0	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	exon	18720692	18720841	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	intron	18720842	18721114	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	CDS	18721115	18721192	1	+	0	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	exon	18721115	18721192	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	intron	18721193	18721353	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	CDS	18721354	18721388	1	+	0	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	exon	18721354	18721388	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	intron	18721389	18721554	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	CDS	18721555	18721610	1	+	1	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	exon	18721555	18721610	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	intron	18721611	18721705	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	CDS	18721706	18721825	1	+	2	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	exon	18721706	18721825	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	intron	18721826	18721951	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	CDS	18721952	18721986	1	+	2	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	exon	18721952	18721986	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	intron	18721987	18722058	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	CDS	18722059	18722081	0.45	+	0	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	exon	18722059	18722081	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	intron	18722082	18722218	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	CDS	18722219	18722264	0.45	+	1	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	exon	18722219	18722264	.	+	.	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
Ledus.S1	AUGUSTUS	stop_codon	18722265	18722267	.	+	0	transcript_id "Ledus.S1G207500.t1"; gene_id "Ledus.S1G207500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3524.t1 is derived from g960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9089506	9089712	.	+	.	Ledus.S1G094500
Ledus.S1	AUGUSTUS	transcript	9089506	9089712	.	+	.	transcript_id "Ledus.S1G094500.t1"; gene_id "Ledus.S1G094500"
Ledus.S1	AUGUSTUS	start_codon	9089506	9089508	.	+	0	transcript_id "Ledus.S1G094500.t1"; gene_id "Ledus.S1G094500"
Ledus.S1	AUGUSTUS	CDS	9089506	9089712	0.85	+	0	transcript_id "Ledus.S1G094500.t1"; gene_id "Ledus.S1G094500"
Ledus.S1	AUGUSTUS	exon	9089506	9089712	.	+	.	transcript_id "Ledus.S1G094500.t1"; gene_id "Ledus.S1G094500"
Ledus.S1	AUGUSTUS	stop_codon	9089713	9089715	.	+	0	transcript_id "Ledus.S1G094500.t1"; gene_id "Ledus.S1G094500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6483.t1 is derived from g3926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31545734	31548752	.	-	.	Ledus.S1G390400
Ledus.S1	AUGUSTUS	transcript	31545734	31548752	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	stop_codon	31545731	31545733	.	-	0	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31545734	31545753	0.74	-	2	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31545734	31545753	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31545754	31545844	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31545845	31545850	0.31	-	2	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31545845	31545850	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31545851	31545963	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31545964	31546090	0.63	-	0	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31545964	31546090	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31546091	31546182	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31546183	31546284	1	-	0	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31546183	31546284	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31546285	31546390	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31546391	31546510	1	-	0	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31546391	31546510	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31546511	31546585	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31546586	31546672	1	-	0	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31546586	31546672	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31546673	31546819	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31546820	31546904	1	-	1	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31546820	31546904	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31546905	31547188	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31547189	31547343	1	-	0	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31547189	31547343	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31547344	31547436	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31547437	31547529	1	-	0	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31547437	31547529	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31547530	31547624	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31547625	31547711	1	-	0	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31547625	31547711	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31547712	31547837	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31547838	31548046	1	-	2	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31547838	31548046	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31548047	31548156	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31548157	31548232	1	-	0	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31548157	31548232	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31548233	31548356	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31548357	31548452	0.96	-	0	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31548357	31548452	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	intron	31548453	31548518	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	CDS	31548519	31548752	0.95	-	0	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	exon	31548519	31548752	.	-	.	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
Ledus.S1	AUGUSTUS	start_codon	31548750	31548752	.	-	0	transcript_id "Ledus.S1G390400.t1"; gene_id "Ledus.S1G390400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12711.t1 is derived from g6333.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14026601	14028058	.	+	.	Ledus.S4G186700
Ledus.S4	AUGUSTUS	transcript	14026601	14028058	.	+	.	transcript_id "Ledus.S4G186700.t1"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	start_codon	14026601	14026603	.	+	0	transcript_id "Ledus.S4G186700.t1"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	CDS	14026601	14026810	0.94	+	0	transcript_id "Ledus.S4G186700.t1"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	exon	14026601	14026810	.	+	.	transcript_id "Ledus.S4G186700.t1"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	intron	14026811	14027452	.	+	.	transcript_id "Ledus.S4G186700.t1"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	CDS	14027453	14028058	0.98	+	0	transcript_id "Ledus.S4G186700.t1"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	exon	14027453	14028058	.	+	.	transcript_id "Ledus.S4G186700.t1"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	stop_codon	14028059	14028061	.	+	0	transcript_id "Ledus.S4G186700.t1"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	transcript	14026601	14027102	.	+	.	transcript_id "Ledus.S4G186700.t2"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	start_codon	14026601	14026603	.	+	0	transcript_id "Ledus.S4G186700.t2"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	CDS	14026601	14026810	0.9	+	0	transcript_id "Ledus.S4G186700.t2"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	exon	14026601	14026810	.	+	.	transcript_id "Ledus.S4G186700.t2"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	intron	14026811	14027084	.	+	.	transcript_id "Ledus.S4G186700.t2"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	CDS	14027085	14027102	0.94	+	0	transcript_id "Ledus.S4G186700.t2"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	exon	14027085	14027102	.	+	.	transcript_id "Ledus.S4G186700.t2"; gene_id "Ledus.S4G186700"
Ledus.S4	AUGUSTUS	stop_codon	14027103	14027105	.	+	0	transcript_id "Ledus.S4G186700.t2"; gene_id "Ledus.S4G186700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1425.t1 is derived from g8287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9989911	10001676	.	-	.	Ledus.S2G130800
Ledus.S2	AUGUSTUS	transcript	9989911	10001676	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	stop_codon	9989908	9989910	.	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9989911	9993465	0.97	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9989911	9993465	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9993466	9993590	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9993591	9993777	1	-	1	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9993591	9993777	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9993778	9993880	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9993881	9994045	0.99	-	1	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9993881	9994045	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9994046	9994136	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9994137	9994321	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9994137	9994321	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9994322	9994400	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9994401	9994499	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9994401	9994499	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9994500	9994595	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9994596	9994702	1	-	2	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9994596	9994702	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9994703	9994834	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9994835	9995030	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9994835	9995030	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9995031	9995117	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9995118	9995228	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9995118	9995228	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9995229	9995328	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9995329	9995497	1	-	1	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9995329	9995497	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9995498	9995656	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9995657	9995785	1	-	1	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9995657	9995785	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9995786	9995865	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9995866	9996134	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9995866	9996134	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9996135	9996279	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9996280	9996456	0.99	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9996280	9996456	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9996457	9996574	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9996575	9996760	0.82	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9996575	9996760	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9996761	9996871	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9996872	9996954	1	-	2	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9996872	9996954	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9996955	9997158	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9997159	9997270	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9997159	9997270	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9997271	9997374	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9997375	9997491	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9997375	9997491	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9997492	9997566	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9997567	9997620	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9997567	9997620	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9997621	9997719	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9997720	9997875	0.99	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9997720	9997875	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9997876	9997981	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9997982	9998045	1	-	1	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9997982	9998045	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9998046	9998218	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9998219	9998298	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9998219	9998298	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9998299	9998399	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9998400	9998480	0.98	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9998400	9998480	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9998481	9998576	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9998577	9998678	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9998577	9998678	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9998679	9998784	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9998785	9998895	0.99	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9998785	9998895	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9998896	9999212	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9999213	9999337	1	-	2	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9999213	9999337	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9999338	9999478	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9999479	9999548	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9999479	9999548	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9999549	9999775	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9999776	9999883	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9999776	9999883	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	9999884	9999975	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	9999976	10000198	0.99	-	1	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	9999976	10000198	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	10000199	10000300	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	10000301	10000437	0.9	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	10000301	10000437	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	10000438	10000544	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	10000545	10000628	0.91	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	10000545	10000628	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	10000629	10000805	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	10000806	10000964	1	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	10000806	10000964	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	10000965	10001115	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	10001116	10001240	1	-	2	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	10001116	10001240	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	intron	10001241	10001357	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	CDS	10001358	10001676	0.74	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	exon	10001358	10001676	.	-	.	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
Ledus.S2	AUGUSTUS	start_codon	10001674	10001676	.	-	0	transcript_id "Ledus.S2G130800.t1"; gene_id "Ledus.S2G130800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6473.t1 is derived from g3916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31459852	31460280	.	-	.	Ledus.S1G389400
Ledus.S1	AUGUSTUS	transcript	31459852	31460280	.	-	.	transcript_id "Ledus.S1G389400.t1"; gene_id "Ledus.S1G389400"
Ledus.S1	AUGUSTUS	stop_codon	31459849	31459851	.	-	0	transcript_id "Ledus.S1G389400.t1"; gene_id "Ledus.S1G389400"
Ledus.S1	AUGUSTUS	CDS	31459852	31460280	0.39	-	0	transcript_id "Ledus.S1G389400.t1"; gene_id "Ledus.S1G389400"
Ledus.S1	AUGUSTUS	exon	31459852	31460280	.	-	.	transcript_id "Ledus.S1G389400.t1"; gene_id "Ledus.S1G389400"
Ledus.S1	AUGUSTUS	start_codon	31460278	31460280	.	-	0	transcript_id "Ledus.S1G389400.t1"; gene_id "Ledus.S1G389400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9694.t1 is derived from g10724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9084679	9084915	.	-	.	Ledus.S3G117100
Ledus.S3	AUGUSTUS	transcript	9084679	9084915	.	-	.	transcript_id "Ledus.S3G117100.t1"; gene_id "Ledus.S3G117100"
Ledus.S3	AUGUSTUS	stop_codon	9084676	9084678	.	-	0	transcript_id "Ledus.S3G117100.t1"; gene_id "Ledus.S3G117100"
Ledus.S3	AUGUSTUS	CDS	9084679	9084915	0.96	-	0	transcript_id "Ledus.S3G117100.t1"; gene_id "Ledus.S3G117100"
Ledus.S3	AUGUSTUS	exon	9084679	9084915	.	-	.	transcript_id "Ledus.S3G117100.t1"; gene_id "Ledus.S3G117100"
Ledus.S3	AUGUSTUS	start_codon	9084913	9084915	.	-	0	transcript_id "Ledus.S3G117100.t1"; gene_id "Ledus.S3G117100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5349.t1 is derived from g2788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23564967	23566241	.	-	.	Ledus.S1G277000
Ledus.S1	AUGUSTUS	transcript	23564967	23566241	.	-	.	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	stop_codon	23564964	23564966	.	-	0	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	CDS	23564967	23565024	0.88	-	1	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	exon	23564967	23565024	.	-	.	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	intron	23565025	23565264	.	-	.	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	CDS	23565265	23565351	0.79	-	1	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	exon	23565265	23565351	.	-	.	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	intron	23565352	23565532	.	-	.	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	CDS	23565533	23565870	0.89	-	0	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	exon	23565533	23565870	.	-	.	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	intron	23565871	23565983	.	-	.	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	CDS	23565984	23566241	0.24	-	0	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	exon	23565984	23566241	.	-	.	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
Ledus.S1	AUGUSTUS	start_codon	23566239	23566241	.	-	0	transcript_id "Ledus.S1G277000.t1"; gene_id "Ledus.S1G277000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10650.t1 is derived from g11680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16863259	16864956	.	-	.	Ledus.S3G212700
Ledus.S3	AUGUSTUS	transcript	16863259	16864956	.	-	.	transcript_id "Ledus.S3G212700.t1"; gene_id "Ledus.S3G212700"
Ledus.S3	AUGUSTUS	stop_codon	16863256	16863258	.	-	0	transcript_id "Ledus.S3G212700.t1"; gene_id "Ledus.S3G212700"
Ledus.S3	AUGUSTUS	CDS	16863259	16864956	1	-	0	transcript_id "Ledus.S3G212700.t1"; gene_id "Ledus.S3G212700"
Ledus.S3	AUGUSTUS	exon	16863259	16864956	.	-	.	transcript_id "Ledus.S3G212700.t1"; gene_id "Ledus.S3G212700"
Ledus.S3	AUGUSTUS	start_codon	16864954	16864956	.	-	0	transcript_id "Ledus.S3G212700.t1"; gene_id "Ledus.S3G212700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12288.t1 is derived from g5908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10899395	10899880	.	-	.	Ledus.S4G144400
Ledus.S4	AUGUSTUS	transcript	10899395	10899880	.	-	.	transcript_id "Ledus.S4G144400.t1"; gene_id "Ledus.S4G144400"
Ledus.S4	AUGUSTUS	stop_codon	10899392	10899394	.	-	0	transcript_id "Ledus.S4G144400.t1"; gene_id "Ledus.S4G144400"
Ledus.S4	AUGUSTUS	CDS	10899395	10899880	0.7	-	0	transcript_id "Ledus.S4G144400.t1"; gene_id "Ledus.S4G144400"
Ledus.S4	AUGUSTUS	exon	10899395	10899880	.	-	.	transcript_id "Ledus.S4G144400.t1"; gene_id "Ledus.S4G144400"
Ledus.S4	AUGUSTUS	start_codon	10899878	10899880	.	-	0	transcript_id "Ledus.S4G144400.t1"; gene_id "Ledus.S4G144400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10745.t1 is derived from g11776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17455154	17456887	.	+	.	Ledus.S3G222200
Ledus.S3	AUGUSTUS	transcript	17455154	17456887	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	start_codon	17455154	17455156	.	+	0	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	CDS	17455154	17455399	0.56	+	0	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	exon	17455154	17455399	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	intron	17455400	17455503	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	CDS	17455504	17455692	0.99	+	0	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	exon	17455504	17455692	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	intron	17455693	17455785	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	CDS	17455786	17455842	0.98	+	0	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	exon	17455786	17455842	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	intron	17455843	17455952	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	CDS	17455953	17456032	1	+	0	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	exon	17455953	17456032	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	intron	17456033	17456120	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	CDS	17456121	17456181	1	+	1	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	exon	17456121	17456181	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	intron	17456182	17456347	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	CDS	17456348	17456405	1	+	0	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	exon	17456348	17456405	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	intron	17456406	17456500	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	CDS	17456501	17456549	1	+	2	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	exon	17456501	17456549	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	intron	17456550	17456645	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	CDS	17456646	17456718	1	+	1	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	exon	17456646	17456718	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	intron	17456719	17456797	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	CDS	17456798	17456887	1	+	0	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	exon	17456798	17456887	.	+	.	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
Ledus.S3	AUGUSTUS	stop_codon	17456888	17456890	.	+	0	transcript_id "Ledus.S3G222200.t1"; gene_id "Ledus.S3G222200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7980.t1 is derived from g12651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8312763	8318055	.	-	.	Ledus.S5G075800
Ledus.S5	AUGUSTUS	transcript	8312763	8318055	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	stop_codon	8312760	8312762	.	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8312763	8312834	1	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8312763	8312834	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8312835	8312961	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8312962	8313012	1	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8312962	8313012	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8313013	8313097	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8313098	8313234	1	-	2	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8313098	8313234	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8313235	8313339	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8313340	8313418	1	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8313340	8313418	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8313419	8313508	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8313509	8313589	1	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8313509	8313589	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8313590	8313694	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8313695	8313856	0.97	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8313695	8313856	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8313857	8313988	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8313989	8314085	1	-	1	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8313989	8314085	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8314086	8314168	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8314169	8314329	1	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8314169	8314329	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8314330	8314425	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8314426	8314524	1	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8314426	8314524	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8314525	8314640	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8314641	8314853	0.71	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8314641	8314853	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8314854	8314970	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8314971	8315084	0.79	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8314971	8315084	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8315085	8315243	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8315244	8315381	1	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8315244	8315381	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8315382	8315578	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8315579	8315650	1	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8315579	8315650	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8315651	8315744	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8315745	8315877	1	-	1	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8315745	8315877	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8315878	8316006	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8316007	8316088	1	-	2	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8316007	8316088	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8316089	8316230	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8316231	8316362	1	-	2	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8316231	8316362	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8316363	8316440	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8316441	8316495	1	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8316441	8316495	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8316496	8316712	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8316713	8316886	1	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8316713	8316886	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8316887	8316997	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8316998	8317162	0.98	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8316998	8317162	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8317163	8317274	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8317275	8317374	0.51	-	1	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8317275	8317374	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8317375	8317545	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8317546	8317704	0.66	-	1	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8317546	8317704	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8317705	8317789	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8317790	8317858	0.97	-	1	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8317790	8317858	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	intron	8317859	8317999	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	CDS	8318000	8318055	0.96	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	exon	8318000	8318055	.	-	.	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
Ledus.S5	AUGUSTUS	start_codon	8318053	8318055	.	-	0	transcript_id "Ledus.S5G075800.t1"; gene_id "Ledus.S5G075800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6952.t1 is derived from g6483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	237128	244802	.	-	.	Ledus.C7G001300
Ledus.C7	AUGUSTUS	transcript	237128	244802	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	stop_codon	237125	237127	.	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	237128	237274	0.94	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	237128	237274	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	237275	237379	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	237380	237458	0.95	-	1	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	237380	237458	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	237459	237533	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	237534	237669	1	-	2	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	237534	237669	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	237670	237857	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	237858	237952	1	-	1	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	237858	237952	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	237953	238107	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	238108	238233	1	-	1	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	238108	238233	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	238234	238332	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	238333	238446	1	-	1	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	238333	238446	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	238447	238601	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	238602	238678	1	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	238602	238678	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	238679	238771	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	238772	238906	1	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	238772	238906	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	238907	238980	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	238981	239068	1	-	1	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	238981	239068	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	239069	239144	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	239145	239228	1	-	1	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	239145	239228	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	239229	239326	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	239327	239382	1	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	239327	239382	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	239383	239481	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	239482	239528	1	-	2	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	239482	239528	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	239529	239605	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	239606	239705	1	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	239606	239705	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	239706	239832	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	239833	239953	1	-	1	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	239833	239953	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	239954	240037	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	240038	240141	1	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	240038	240141	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	240142	240242	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	240243	240300	0.96	-	1	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	240243	240300	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	240301	240387	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	240388	240438	1	-	1	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	240388	240438	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	240439	240535	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	240536	240640	0.98	-	1	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	240536	240640	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	240641	240783	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	240784	240862	0.44	-	2	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	240784	240862	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	240863	240959	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	240960	241038	1	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	240960	241038	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	241039	241112	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	241113	241223	0.92	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	241113	241223	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	241224	241336	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	241337	241896	0.9	-	2	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	241337	241896	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	241897	241986	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	241987	242290	0.96	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	241987	242290	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	242291	242474	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	242475	242581	0.97	-	2	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	242475	242581	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	242582	242690	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	242691	242868	0.63	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	242691	242868	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	242869	242972	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	242973	243087	0.27	-	1	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	242973	243087	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	243088	243489	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	243490	244802	0.72	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	243490	244802	.	-	.	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	start_codon	244800	244802	.	-	0	transcript_id "Ledus.C7G001300.t1"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	transcript	237128	244802	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	stop_codon	237125	237127	.	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	237128	237274	0.95	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	237128	237274	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	237275	237379	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	237380	237458	0.98	-	1	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	237380	237458	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	237459	237533	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	237534	237669	1	-	2	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	237534	237669	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	237670	237857	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	237858	237952	1	-	1	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	237858	237952	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	237953	238053	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	238054	238233	0.66	-	1	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	238054	238233	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	238234	238332	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	238333	238446	1	-	1	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	238333	238446	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	238447	238601	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	238602	238678	1	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	238602	238678	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	238679	238771	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	238772	238906	1	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	238772	238906	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	238907	238980	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	238981	239068	1	-	1	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	238981	239068	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	239069	239144	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	239145	239228	1	-	1	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	239145	239228	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	239229	239326	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	239327	239382	1	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	239327	239382	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	239383	239481	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	239482	239528	1	-	2	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	239482	239528	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	239529	239605	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	239606	239705	1	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	239606	239705	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	239706	239832	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	239833	239953	0.99	-	1	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	239833	239953	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	239954	240037	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	240038	240141	1	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	240038	240141	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	240142	240242	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	240243	240300	0.93	-	1	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	240243	240300	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	240301	240387	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	240388	240438	1	-	1	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	240388	240438	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	240439	240535	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	240536	240640	1	-	1	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	240536	240640	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	240641	240783	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	240784	240862	0.33	-	2	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	240784	240862	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	240863	240959	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	240960	241038	1	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	240960	241038	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	241039	241112	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	241113	241223	0.97	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	241113	241223	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	241224	241336	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	241337	241896	0.94	-	2	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	241337	241896	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	241897	241986	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	241987	242290	0.96	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	241987	242290	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	242291	242474	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	242475	242581	0.98	-	2	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	242475	242581	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	242582	242690	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	242691	242868	0.71	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	242691	242868	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	242869	242972	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	242973	243087	0.27	-	1	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	242973	243087	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	intron	243088	243489	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	CDS	243490	244802	0.71	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	exon	243490	244802	.	-	.	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
Ledus.C7	AUGUSTUS	start_codon	244800	244802	.	-	0	transcript_id "Ledus.C7G001300.t2"; gene_id "Ledus.C7G001300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4040.t1 is derived from g1476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14283916	14284791	.	-	.	Ledus.S1G146100
Ledus.S1	AUGUSTUS	transcript	14283916	14284791	.	-	.	transcript_id "Ledus.S1G146100.t1"; gene_id "Ledus.S1G146100"
Ledus.S1	AUGUSTUS	stop_codon	14283913	14283915	.	-	0	transcript_id "Ledus.S1G146100.t1"; gene_id "Ledus.S1G146100"
Ledus.S1	AUGUSTUS	CDS	14283916	14284791	0.78	-	0	transcript_id "Ledus.S1G146100.t1"; gene_id "Ledus.S1G146100"
Ledus.S1	AUGUSTUS	exon	14283916	14284791	.	-	.	transcript_id "Ledus.S1G146100.t1"; gene_id "Ledus.S1G146100"
Ledus.S1	AUGUSTUS	start_codon	14284789	14284791	.	-	0	transcript_id "Ledus.S1G146100.t1"; gene_id "Ledus.S1G146100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8752.t1 is derived from g9782.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1818428	1820642	.	-	.	Ledus.S3G022900
Ledus.S3	AUGUSTUS	transcript	1818428	1820642	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	stop_codon	1818425	1818427	.	-	0	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	CDS	1818428	1818805	0.99	-	0	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	exon	1818428	1818805	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	intron	1818806	1818892	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	CDS	1818893	1819022	0.96	-	1	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	exon	1818893	1819022	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	intron	1819023	1819123	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	CDS	1819124	1819413	0.91	-	0	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	exon	1819124	1819413	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	intron	1819414	1819487	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	CDS	1819488	1819669	0.94	-	2	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	exon	1819488	1819669	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	intron	1819670	1819759	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	CDS	1819760	1819979	0.79	-	0	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	exon	1819760	1819979	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	intron	1819980	1820088	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	CDS	1820089	1820107	0.96	-	1	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	exon	1820089	1820107	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	intron	1820108	1820206	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	CDS	1820207	1820467	1	-	1	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	exon	1820207	1820467	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	intron	1820468	1820559	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	CDS	1820560	1820642	1	-	0	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	exon	1820560	1820642	.	-	.	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
Ledus.S3	AUGUSTUS	start_codon	1820640	1820642	.	-	0	transcript_id "Ledus.S3G022900.t1"; gene_id "Ledus.S3G022900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7975.t1 is derived from g12646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8298163	8299035	.	-	.	Ledus.S5G075300
Ledus.S5	AUGUSTUS	transcript	8298163	8299035	.	-	.	transcript_id "Ledus.S5G075300.t1"; gene_id "Ledus.S5G075300"
Ledus.S5	AUGUSTUS	stop_codon	8298160	8298162	.	-	0	transcript_id "Ledus.S5G075300.t1"; gene_id "Ledus.S5G075300"
Ledus.S5	AUGUSTUS	CDS	8298163	8298254	0.99	-	2	transcript_id "Ledus.S5G075300.t1"; gene_id "Ledus.S5G075300"
Ledus.S5	AUGUSTUS	exon	8298163	8298254	.	-	.	transcript_id "Ledus.S5G075300.t1"; gene_id "Ledus.S5G075300"
Ledus.S5	AUGUSTUS	intron	8298255	8298369	.	-	.	transcript_id "Ledus.S5G075300.t1"; gene_id "Ledus.S5G075300"
Ledus.S5	AUGUSTUS	CDS	8298370	8298472	1	-	0	transcript_id "Ledus.S5G075300.t1"; gene_id "Ledus.S5G075300"
Ledus.S5	AUGUSTUS	exon	8298370	8298472	.	-	.	transcript_id "Ledus.S5G075300.t1"; gene_id "Ledus.S5G075300"
Ledus.S5	AUGUSTUS	intron	8298473	8298645	.	-	.	transcript_id "Ledus.S5G075300.t1"; gene_id "Ledus.S5G075300"
Ledus.S5	AUGUSTUS	CDS	8298646	8299035	0.84	-	0	transcript_id "Ledus.S5G075300.t1"; gene_id "Ledus.S5G075300"
Ledus.S5	AUGUSTUS	exon	8298646	8299035	.	-	.	transcript_id "Ledus.S5G075300.t1"; gene_id "Ledus.S5G075300"
Ledus.S5	AUGUSTUS	start_codon	8299033	8299035	.	-	0	transcript_id "Ledus.S5G075300.t1"; gene_id "Ledus.S5G075300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11051.t1 is derived from g4669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1416119	1417240	.	-	.	Ledus.S4G020700
Ledus.S4	AUGUSTUS	transcript	1416119	1417240	.	-	.	transcript_id "Ledus.S4G020700.t1"; gene_id "Ledus.S4G020700"
Ledus.S4	AUGUSTUS	stop_codon	1416116	1416118	.	-	0	transcript_id "Ledus.S4G020700.t1"; gene_id "Ledus.S4G020700"
Ledus.S4	AUGUSTUS	CDS	1416119	1417240	0.96	-	0	transcript_id "Ledus.S4G020700.t1"; gene_id "Ledus.S4G020700"
Ledus.S4	AUGUSTUS	exon	1416119	1417240	.	-	.	transcript_id "Ledus.S4G020700.t1"; gene_id "Ledus.S4G020700"
Ledus.S4	AUGUSTUS	start_codon	1417238	1417240	.	-	0	transcript_id "Ledus.S4G020700.t1"; gene_id "Ledus.S4G020700"
# This transcript jg10734.t1 is derived from g11765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17406218	17407237	.	+	.	Ledus.S3G221100
Ledus.S3	AUGUSTUS	transcript	17406218	17407237	.	+	.	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	start_codon	17406218	17406220	.	+	0	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	CDS	17406218	17406264	0.94	+	0	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	exon	17406218	17406264	.	+	.	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	intron	17406265	17406435	.	+	.	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	CDS	17406436	17406477	0.85	+	1	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	exon	17406436	17406477	.	+	.	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	intron	17406478	17406825	.	+	.	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	CDS	17406826	17406849	0.83	+	1	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	exon	17406826	17406849	.	+	.	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	intron	17406850	17406984	.	+	.	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	CDS	17406985	17407237	0.83	+	1	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	exon	17406985	17407237	.	+	.	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
Ledus.S3	AUGUSTUS	stop_codon	17407238	17407240	.	+	0	transcript_id "Ledus.S3G221100.t1"; gene_id "Ledus.S3G221100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1783.t1 is derived from g8646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12517141	12519377	.	-	.	Ledus.S2G166500
Ledus.S2	AUGUSTUS	transcript	12517141	12519377	.	-	.	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	stop_codon	12517138	12517140	.	-	0	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	CDS	12517141	12517362	0.43	-	0	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	exon	12517141	12517362	.	-	.	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	intron	12517363	12517456	.	-	.	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	CDS	12517457	12517702	1	-	0	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	exon	12517457	12517702	.	-	.	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	intron	12517703	12517779	.	-	.	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	CDS	12517780	12517994	1	-	2	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	exon	12517780	12517994	.	-	.	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	intron	12517995	12518183	.	-	.	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	CDS	12518184	12518423	1	-	2	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	exon	12518184	12518423	.	-	.	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	intron	12518424	12518517	.	-	.	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	CDS	12518518	12518694	0.96	-	2	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	exon	12518518	12518694	.	-	.	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	intron	12518695	12518806	.	-	.	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	CDS	12518807	12519377	0.98	-	0	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	exon	12518807	12519377	.	-	.	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
Ledus.S2	AUGUSTUS	start_codon	12519375	12519377	.	-	0	transcript_id "Ledus.S2G166500.t1"; gene_id "Ledus.S2G166500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4550.t1 is derived from g1987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17621396	17626936	.	+	.	Ledus.S1G197100
Ledus.S1	AUGUSTUS	transcript	17621396	17626936	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	start_codon	17621396	17621398	.	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17621396	17621519	0.93	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17621396	17621519	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17621520	17621927	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17621928	17621960	0.93	+	2	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17621928	17621960	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17621961	17622110	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17622111	17623089	0.71	+	2	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17622111	17623089	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17623090	17623203	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17623204	17623357	0.86	+	1	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17623204	17623357	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17623358	17623472	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17623473	17623565	0.66	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17623473	17623565	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17623566	17623666	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17623667	17623755	1	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17623667	17623755	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17623756	17623959	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17623960	17624086	1	+	1	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17623960	17624086	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17624087	17624230	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17624231	17624350	1	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17624231	17624350	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17624351	17624683	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17624684	17624734	0.99	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17624684	17624734	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17624735	17624846	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17624847	17624908	0.99	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17624847	17624908	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17624909	17625012	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17625013	17625070	1	+	1	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17625013	17625070	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17625071	17625159	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17625160	17625285	1	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17625160	17625285	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17625286	17625488	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17625489	17625569	1	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17625489	17625569	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17625570	17625684	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17625685	17625814	1	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17625685	17625814	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17625815	17625952	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17625953	17626101	1	+	2	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17625953	17626101	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17626102	17626181	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17626182	17626463	1	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17626182	17626463	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17626464	17626571	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17626572	17626670	0.99	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17626572	17626670	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17626671	17626792	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17626793	17626838	0.59	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17626793	17626838	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	intron	17626839	17626934	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	CDS	17626935	17626936	0.6	+	2	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	exon	17626935	17626936	.	+	.	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
Ledus.S1	AUGUSTUS	stop_codon	17626937	17626939	.	+	0	transcript_id "Ledus.S1G197100.t1"; gene_id "Ledus.S1G197100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12684.t1 is derived from g6306.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13873660	13875217	.	-	.	Ledus.S4G184000
Ledus.S4	AUGUSTUS	transcript	13873660	13875217	.	-	.	transcript_id "Ledus.S4G184000.t1"; gene_id "Ledus.S4G184000"
Ledus.S4	AUGUSTUS	stop_codon	13873657	13873659	.	-	0	transcript_id "Ledus.S4G184000.t1"; gene_id "Ledus.S4G184000"
Ledus.S4	AUGUSTUS	CDS	13873660	13874812	1	-	1	transcript_id "Ledus.S4G184000.t1"; gene_id "Ledus.S4G184000"
Ledus.S4	AUGUSTUS	exon	13873660	13874812	.	-	.	transcript_id "Ledus.S4G184000.t1"; gene_id "Ledus.S4G184000"
Ledus.S4	AUGUSTUS	intron	13874813	13874897	.	-	.	transcript_id "Ledus.S4G184000.t1"; gene_id "Ledus.S4G184000"
Ledus.S4	AUGUSTUS	CDS	13874898	13875016	1	-	0	transcript_id "Ledus.S4G184000.t1"; gene_id "Ledus.S4G184000"
Ledus.S4	AUGUSTUS	exon	13874898	13875016	.	-	.	transcript_id "Ledus.S4G184000.t1"; gene_id "Ledus.S4G184000"
Ledus.S4	AUGUSTUS	intron	13875017	13875088	.	-	.	transcript_id "Ledus.S4G184000.t1"; gene_id "Ledus.S4G184000"
Ledus.S4	AUGUSTUS	CDS	13875089	13875217	0.99	-	0	transcript_id "Ledus.S4G184000.t1"; gene_id "Ledus.S4G184000"
Ledus.S4	AUGUSTUS	exon	13875089	13875217	.	-	.	transcript_id "Ledus.S4G184000.t1"; gene_id "Ledus.S4G184000"
Ledus.S4	AUGUSTUS	start_codon	13875215	13875217	.	-	0	transcript_id "Ledus.S4G184000.t1"; gene_id "Ledus.S4G184000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3705.t1 is derived from g1141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11022819	11023241	.	-	.	Ledus.S1G112600
Ledus.S1	AUGUSTUS	transcript	11022819	11023241	.	-	.	transcript_id "Ledus.S1G112600.t1"; gene_id "Ledus.S1G112600"
Ledus.S1	AUGUSTUS	stop_codon	11022816	11022818	.	-	0	transcript_id "Ledus.S1G112600.t1"; gene_id "Ledus.S1G112600"
Ledus.S1	AUGUSTUS	CDS	11022819	11023241	0.99	-	0	transcript_id "Ledus.S1G112600.t1"; gene_id "Ledus.S1G112600"
Ledus.S1	AUGUSTUS	exon	11022819	11023241	.	-	.	transcript_id "Ledus.S1G112600.t1"; gene_id "Ledus.S1G112600"
Ledus.S1	AUGUSTUS	start_codon	11023239	11023241	.	-	0	transcript_id "Ledus.S1G112600.t1"; gene_id "Ledus.S1G112600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12203.t1 is derived from g5822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10324354	10325963	.	-	.	Ledus.S4G135900
Ledus.S4	AUGUSTUS	transcript	10324354	10325963	.	-	.	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	stop_codon	10324351	10324353	.	-	0	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	CDS	10324354	10324600	0.98	-	1	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	exon	10324354	10324600	.	-	.	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	intron	10324601	10324671	.	-	.	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	CDS	10324672	10324969	0.79	-	2	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	exon	10324672	10324969	.	-	.	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	intron	10324970	10325092	.	-	.	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	CDS	10325093	10325308	0.52	-	2	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	exon	10325093	10325308	.	-	.	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	intron	10325309	10325476	.	-	.	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	CDS	10325477	10325963	0.35	-	0	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	exon	10325477	10325963	.	-	.	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
Ledus.S4	AUGUSTUS	start_codon	10325961	10325963	.	-	0	transcript_id "Ledus.S4G135900.t1"; gene_id "Ledus.S4G135900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9741.t1 is derived from g10771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9530628	9533929	.	+	.	Ledus.S3G121800
Ledus.S3	AUGUSTUS	transcript	9530628	9533929	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	start_codon	9530628	9530630	.	+	0	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	CDS	9530628	9531407	0.98	+	0	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	exon	9530628	9531407	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	intron	9531408	9531498	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	CDS	9531499	9531586	1	+	0	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	exon	9531499	9531586	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	intron	9531587	9531720	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	CDS	9531721	9531856	1	+	2	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	exon	9531721	9531856	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	intron	9531857	9531997	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	CDS	9531998	9532270	0.98	+	1	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	exon	9531998	9532270	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	intron	9532271	9532402	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	CDS	9532403	9532574	1	+	1	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	exon	9532403	9532574	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	intron	9532575	9532656	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	CDS	9532657	9532896	0.62	+	0	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	exon	9532657	9532896	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	intron	9532897	9533024	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	CDS	9533025	9533157	1	+	0	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	exon	9533025	9533157	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	intron	9533158	9533324	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	CDS	9533325	9533506	1	+	2	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	exon	9533325	9533506	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	intron	9533507	9533608	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	CDS	9533609	9533721	0.97	+	0	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	exon	9533609	9533721	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	intron	9533722	9533823	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	CDS	9533824	9533929	0.98	+	1	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	exon	9533824	9533929	.	+	.	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
Ledus.S3	AUGUSTUS	stop_codon	9533930	9533932	.	+	0	transcript_id "Ledus.S3G121800.t1"; gene_id "Ledus.S3G121800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9827.t1 is derived from g10857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10277776	10278556	.	-	.	Ledus.S3G130400
Ledus.S3	AUGUSTUS	transcript	10277776	10278556	.	-	.	transcript_id "Ledus.S3G130400.t1"; gene_id "Ledus.S3G130400"
Ledus.S3	AUGUSTUS	stop_codon	10277773	10277775	.	-	0	transcript_id "Ledus.S3G130400.t1"; gene_id "Ledus.S3G130400"
Ledus.S3	AUGUSTUS	CDS	10277776	10278203	0.39	-	2	transcript_id "Ledus.S3G130400.t1"; gene_id "Ledus.S3G130400"
Ledus.S3	AUGUSTUS	exon	10277776	10278203	.	-	.	transcript_id "Ledus.S3G130400.t1"; gene_id "Ledus.S3G130400"
Ledus.S3	AUGUSTUS	intron	10278204	10278300	.	-	.	transcript_id "Ledus.S3G130400.t1"; gene_id "Ledus.S3G130400"
Ledus.S3	AUGUSTUS	CDS	10278301	10278556	0.4	-	0	transcript_id "Ledus.S3G130400.t1"; gene_id "Ledus.S3G130400"
Ledus.S3	AUGUSTUS	exon	10278301	10278556	.	-	.	transcript_id "Ledus.S3G130400.t1"; gene_id "Ledus.S3G130400"
Ledus.S3	AUGUSTUS	start_codon	10278554	10278556	.	-	0	transcript_id "Ledus.S3G130400.t1"; gene_id "Ledus.S3G130400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4198.t1 is derived from g1634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15339179	15340420	.	+	.	Ledus.S1G161900
Ledus.S1	AUGUSTUS	transcript	15339179	15340420	.	+	.	transcript_id "Ledus.S1G161900.t1"; gene_id "Ledus.S1G161900"
Ledus.S1	AUGUSTUS	start_codon	15339179	15339181	.	+	0	transcript_id "Ledus.S1G161900.t1"; gene_id "Ledus.S1G161900"
Ledus.S1	AUGUSTUS	CDS	15339179	15339630	0.56	+	0	transcript_id "Ledus.S1G161900.t1"; gene_id "Ledus.S1G161900"
Ledus.S1	AUGUSTUS	exon	15339179	15339630	.	+	.	transcript_id "Ledus.S1G161900.t1"; gene_id "Ledus.S1G161900"
Ledus.S1	AUGUSTUS	intron	15339631	15339719	.	+	.	transcript_id "Ledus.S1G161900.t1"; gene_id "Ledus.S1G161900"
Ledus.S1	AUGUSTUS	CDS	15339720	15339988	0.95	+	1	transcript_id "Ledus.S1G161900.t1"; gene_id "Ledus.S1G161900"
Ledus.S1	AUGUSTUS	exon	15339720	15339988	.	+	.	transcript_id "Ledus.S1G161900.t1"; gene_id "Ledus.S1G161900"
Ledus.S1	AUGUSTUS	intron	15339989	15340118	.	+	.	transcript_id "Ledus.S1G161900.t1"; gene_id "Ledus.S1G161900"
Ledus.S1	AUGUSTUS	CDS	15340119	15340420	0.81	+	2	transcript_id "Ledus.S1G161900.t1"; gene_id "Ledus.S1G161900"
Ledus.S1	AUGUSTUS	exon	15340119	15340420	.	+	.	transcript_id "Ledus.S1G161900.t1"; gene_id "Ledus.S1G161900"
Ledus.S1	AUGUSTUS	stop_codon	15340421	15340423	.	+	0	transcript_id "Ledus.S1G161900.t1"; gene_id "Ledus.S1G161900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1480.t1 is derived from g8341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10487001	10492846	.	+	.	Ledus.S2G136200
Ledus.S2	AUGUSTUS	transcript	10487001	10492846	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	start_codon	10487001	10487003	.	+	0	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10487001	10488655	0.88	+	0	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10487001	10488655	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10488656	10488915	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10488916	10488999	0.93	+	1	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10488916	10488999	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10489000	10489230	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10489231	10489313	1	+	1	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10489231	10489313	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10489314	10489764	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10489765	10489836	0.78	+	2	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10489765	10489836	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10489837	10490158	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10490159	10490278	0.71	+	2	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10490159	10490278	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10490279	10490372	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10490373	10490464	1	+	2	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10490373	10490464	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10490465	10490563	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10490564	10490626	1	+	0	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10490564	10490626	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10490627	10490784	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10490785	10490883	1	+	0	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10490785	10490883	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10490884	10490993	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10490994	10491152	1	+	0	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10490994	10491152	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10491153	10491238	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10491239	10491310	1	+	0	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10491239	10491310	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10491311	10491401	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10491402	10491534	1	+	0	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10491402	10491534	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10491535	10491623	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10491624	10491688	1	+	2	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10491624	10491688	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10491689	10491820	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10491821	10491899	1	+	0	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10491821	10491899	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10491900	10491993	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10491994	10492095	1	+	2	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10491994	10492095	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10492096	10492178	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10492179	10492371	1	+	2	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10492179	10492371	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	intron	10492372	10492602	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	CDS	10492603	10492846	0.98	+	1	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	exon	10492603	10492846	.	+	.	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
Ledus.S2	AUGUSTUS	stop_codon	10492847	10492849	.	+	0	transcript_id "Ledus.S2G136200.t1"; gene_id "Ledus.S2G136200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10331.t1 is derived from g11361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14271369	14273310	.	-	.	Ledus.S3G180800
Ledus.S3	AUGUSTUS	transcript	14271369	14273310	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	stop_codon	14271366	14271368	.	-	0	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14271369	14271417	1	-	1	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14271369	14271417	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	intron	14271418	14271585	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14271586	14271664	1	-	2	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14271586	14271664	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	intron	14271665	14271802	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14271803	14271968	1	-	0	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14271803	14271968	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	intron	14271969	14272187	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14272188	14272234	1	-	2	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14272188	14272234	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	intron	14272235	14272379	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14272380	14272541	1	-	2	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14272380	14272541	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	intron	14272542	14272751	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14272752	14272872	1	-	0	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14272752	14272872	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	intron	14272873	14273103	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14273104	14273310	0.97	-	0	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14273104	14273310	.	-	.	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	start_codon	14273308	14273310	.	-	0	transcript_id "Ledus.S3G180800.t1"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	transcript	14271369	14273310	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	stop_codon	14271366	14271368	.	-	0	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14271369	14271417	1	-	1	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14271369	14271417	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	intron	14271418	14271585	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14271586	14271664	1	-	2	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14271586	14271664	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	intron	14271665	14271802	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14271803	14271980	1	-	0	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14271803	14271980	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	intron	14271981	14272187	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14272188	14272234	1	-	2	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14272188	14272234	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	intron	14272235	14272379	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14272380	14272541	1	-	2	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14272380	14272541	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	intron	14272542	14272751	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14272752	14272872	1	-	0	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14272752	14272872	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	intron	14272873	14273103	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	CDS	14273104	14273310	0.96	-	0	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	exon	14273104	14273310	.	-	.	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
Ledus.S3	AUGUSTUS	start_codon	14273308	14273310	.	-	0	transcript_id "Ledus.S3G180800.t2"; gene_id "Ledus.S3G180800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7397.t1 is derived from g12068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2066227	2070615	.	-	.	Ledus.S5G017500
Ledus.S5	AUGUSTUS	transcript	2066227	2070615	.	-	.	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	stop_codon	2066224	2066226	.	-	0	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	CDS	2066227	2067314	0.73	-	2	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	exon	2066227	2067314	.	-	.	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	intron	2067315	2067457	.	-	.	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	CDS	2067458	2068616	0.93	-	0	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	exon	2067458	2068616	.	-	.	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	intron	2068617	2068743	.	-	.	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	CDS	2068744	2068791	0.91	-	0	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	exon	2068744	2068791	.	-	.	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	intron	2068792	2068940	.	-	.	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	CDS	2068941	2070096	0.47	-	1	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	exon	2068941	2070096	.	-	.	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	intron	2070097	2070239	.	-	.	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	CDS	2070240	2070322	0.95	-	0	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	exon	2070240	2070322	.	-	.	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	intron	2070323	2070465	.	-	.	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	CDS	2070466	2070615	0.93	-	0	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	exon	2070466	2070615	.	-	.	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
Ledus.S5	AUGUSTUS	start_codon	2070613	2070615	.	-	0	transcript_id "Ledus.S5G017500.t1"; gene_id "Ledus.S5G017500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7053.t1 is derived from g6584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1075808	1076092	.	-	.	Ledus.C7G011400
Ledus.C7	AUGUSTUS	transcript	1075808	1076092	.	-	.	transcript_id "Ledus.C7G011400.t1"; gene_id "Ledus.C7G011400"
Ledus.C7	AUGUSTUS	stop_codon	1075805	1075807	.	-	0	transcript_id "Ledus.C7G011400.t1"; gene_id "Ledus.C7G011400"
Ledus.C7	AUGUSTUS	CDS	1075808	1076092	0.79	-	0	transcript_id "Ledus.C7G011400.t1"; gene_id "Ledus.C7G011400"
Ledus.C7	AUGUSTUS	exon	1075808	1076092	.	-	.	transcript_id "Ledus.C7G011400.t1"; gene_id "Ledus.C7G011400"
Ledus.C7	AUGUSTUS	start_codon	1076090	1076092	.	-	0	transcript_id "Ledus.C7G011400.t1"; gene_id "Ledus.C7G011400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8910.t1 is derived from g9940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3061984	3063792	.	+	.	Ledus.S3G038700
Ledus.S3	AUGUSTUS	transcript	3061984	3063792	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	start_codon	3061984	3061986	.	+	0	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	CDS	3061984	3062079	1	+	0	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	exon	3061984	3062079	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	intron	3062080	3062303	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	CDS	3062304	3062402	0.99	+	0	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	exon	3062304	3062402	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	intron	3062403	3062511	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	CDS	3062512	3062633	0.34	+	0	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	exon	3062512	3062633	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	intron	3062634	3062756	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	CDS	3062757	3062801	0.24	+	1	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	exon	3062757	3062801	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	intron	3062802	3063138	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	CDS	3063139	3063186	0.45	+	1	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	exon	3063139	3063186	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	intron	3063187	3063323	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	CDS	3063324	3063390	0.92	+	1	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	exon	3063324	3063390	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	intron	3063391	3063744	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	CDS	3063745	3063792	0.83	+	0	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	exon	3063745	3063792	.	+	.	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
Ledus.S3	AUGUSTUS	stop_codon	3063793	3063795	.	+	0	transcript_id "Ledus.S3G038700.t1"; gene_id "Ledus.S3G038700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6270.t1 is derived from g3713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30052513	30053895	.	-	.	Ledus.S1G369100
Ledus.S1	AUGUSTUS	transcript	30052513	30053895	.	-	.	transcript_id "Ledus.S1G369100.t1"; gene_id "Ledus.S1G369100"
Ledus.S1	AUGUSTUS	stop_codon	30052510	30052512	.	-	0	transcript_id "Ledus.S1G369100.t1"; gene_id "Ledus.S1G369100"
Ledus.S1	AUGUSTUS	CDS	30052513	30053895	0.89	-	0	transcript_id "Ledus.S1G369100.t1"; gene_id "Ledus.S1G369100"
Ledus.S1	AUGUSTUS	exon	30052513	30053895	.	-	.	transcript_id "Ledus.S1G369100.t1"; gene_id "Ledus.S1G369100"
Ledus.S1	AUGUSTUS	start_codon	30053893	30053895	.	-	0	transcript_id "Ledus.S1G369100.t1"; gene_id "Ledus.S1G369100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1018.t1 is derived from g7879.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6784330	6788529	.	-	.	Ledus.S2G090000
Ledus.S2	AUGUSTUS	transcript	6784330	6788529	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	stop_codon	6784327	6784329	.	-	0	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6784330	6784398	0.75	-	0	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6784330	6784398	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	intron	6784399	6784556	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6784557	6784610	1	-	0	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6784557	6784610	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	intron	6784611	6784702	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6784703	6784774	0.98	-	0	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6784703	6784774	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	intron	6784775	6784888	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6784889	6784976	0.97	-	1	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6784889	6784976	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	intron	6784977	6785083	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6785084	6785151	0.9	-	0	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6785084	6785151	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	intron	6785152	6785265	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6785266	6785373	0.97	-	0	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6785266	6785373	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	intron	6785374	6785464	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6785465	6785884	0.99	-	0	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6785465	6785884	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	intron	6785885	6786004	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6786005	6786089	1	-	1	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6786005	6786089	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	intron	6786090	6786180	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6786181	6786260	1	-	0	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6786181	6786260	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	intron	6786261	6786386	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6786387	6786464	1	-	0	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6786387	6786464	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	intron	6786465	6786691	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6786692	6786852	0.55	-	2	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6786692	6786852	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	intron	6786853	6786961	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6786962	6787012	0.37	-	2	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6786962	6787012	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	intron	6787013	6787094	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	CDS	6787095	6788529	0.92	-	0	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	exon	6787095	6788529	.	-	.	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
Ledus.S2	AUGUSTUS	start_codon	6788527	6788529	.	-	0	transcript_id "Ledus.S2G090000.t1"; gene_id "Ledus.S2G090000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10919.t1 is derived from g4537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	578063	578696	.	+	.	Ledus.S4G007500
Ledus.S4	AUGUSTUS	transcript	578063	578696	.	+	.	transcript_id "Ledus.S4G007500.t1"; gene_id "Ledus.S4G007500"
Ledus.S4	AUGUSTUS	start_codon	578063	578065	.	+	0	transcript_id "Ledus.S4G007500.t1"; gene_id "Ledus.S4G007500"
Ledus.S4	AUGUSTUS	CDS	578063	578135	0.45	+	0	transcript_id "Ledus.S4G007500.t1"; gene_id "Ledus.S4G007500"
Ledus.S4	AUGUSTUS	exon	578063	578135	.	+	.	transcript_id "Ledus.S4G007500.t1"; gene_id "Ledus.S4G007500"
Ledus.S4	AUGUSTUS	intron	578136	578217	.	+	.	transcript_id "Ledus.S4G007500.t1"; gene_id "Ledus.S4G007500"
Ledus.S4	AUGUSTUS	CDS	578218	578696	1	+	2	transcript_id "Ledus.S4G007500.t1"; gene_id "Ledus.S4G007500"
Ledus.S4	AUGUSTUS	exon	578218	578696	.	+	.	transcript_id "Ledus.S4G007500.t1"; gene_id "Ledus.S4G007500"
Ledus.S4	AUGUSTUS	stop_codon	578697	578699	.	+	0	transcript_id "Ledus.S4G007500.t1"; gene_id "Ledus.S4G007500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3406.t1 is derived from g841.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8111452	8112424	.	+	.	Ledus.S1G082700
Ledus.S1	AUGUSTUS	transcript	8111452	8112424	.	+	.	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	start_codon	8111452	8111454	.	+	0	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	CDS	8111452	8111555	0.75	+	0	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	exon	8111452	8111555	.	+	.	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	intron	8111556	8111626	.	+	.	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	CDS	8111627	8111892	1	+	1	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	exon	8111627	8111892	.	+	.	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	intron	8111893	8111977	.	+	.	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	CDS	8111978	8112108	1	+	2	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	exon	8111978	8112108	.	+	.	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	intron	8112109	8112193	.	+	.	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	CDS	8112194	8112424	1	+	0	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	exon	8112194	8112424	.	+	.	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
Ledus.S1	AUGUSTUS	stop_codon	8112425	8112427	.	+	0	transcript_id "Ledus.S1G082700.t1"; gene_id "Ledus.S1G082700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3433.t1 is derived from g868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8350711	8354075	.	+	.	Ledus.S1G085400
Ledus.S1	AUGUSTUS	transcript	8350711	8354075	.	+	.	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	start_codon	8350711	8350713	.	+	0	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	CDS	8350711	8350890	0.63	+	0	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	exon	8350711	8350890	.	+	.	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	intron	8350891	8350961	.	+	.	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	CDS	8350962	8351287	1	+	0	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	exon	8350962	8351287	.	+	.	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	intron	8351288	8351380	.	+	.	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	CDS	8351381	8352689	1	+	1	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	exon	8351381	8352689	.	+	.	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	intron	8352690	8352764	.	+	.	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	CDS	8352765	8353031	1	+	0	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	exon	8352765	8353031	.	+	.	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	intron	8353032	8353118	.	+	.	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	CDS	8353119	8354075	1	+	0	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	exon	8353119	8354075	.	+	.	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
Ledus.S1	AUGUSTUS	stop_codon	8354076	8354078	.	+	0	transcript_id "Ledus.S1G085400.t1"; gene_id "Ledus.S1G085400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10962.t1 is derived from g4580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	915093	916682	.	+	.	Ledus.S4G011800
Ledus.S4	AUGUSTUS	transcript	915093	916682	.	+	.	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	start_codon	915093	915095	.	+	0	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	CDS	915093	915245	0.51	+	0	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	exon	915093	915245	.	+	.	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	intron	915246	915354	.	+	.	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	CDS	915355	915461	1	+	0	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	exon	915355	915461	.	+	.	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	intron	915462	915550	.	+	.	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	CDS	915551	915683	1	+	1	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	exon	915551	915683	.	+	.	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	intron	915684	915815	.	+	.	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	CDS	915816	916086	1	+	0	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	exon	915816	916086	.	+	.	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	intron	916087	916175	.	+	.	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	CDS	916176	916403	1	+	2	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	exon	916176	916403	.	+	.	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	intron	916404	916482	.	+	.	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	CDS	916483	916682	0.99	+	2	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	exon	916483	916682	.	+	.	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
Ledus.S4	AUGUSTUS	stop_codon	916683	916685	.	+	0	transcript_id "Ledus.S4G011800.t1"; gene_id "Ledus.S4G011800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5172.t1 is derived from g2611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22153493	22155333	.	-	.	Ledus.S1G259300
Ledus.S1	AUGUSTUS	transcript	22153493	22155333	.	-	.	transcript_id "Ledus.S1G259300.t1"; gene_id "Ledus.S1G259300"
Ledus.S1	AUGUSTUS	stop_codon	22153490	22153492	.	-	0	transcript_id "Ledus.S1G259300.t1"; gene_id "Ledus.S1G259300"
Ledus.S1	AUGUSTUS	CDS	22153493	22155015	0.68	-	2	transcript_id "Ledus.S1G259300.t1"; gene_id "Ledus.S1G259300"
Ledus.S1	AUGUSTUS	exon	22153493	22155015	.	-	.	transcript_id "Ledus.S1G259300.t1"; gene_id "Ledus.S1G259300"
Ledus.S1	AUGUSTUS	intron	22155016	22155103	.	-	.	transcript_id "Ledus.S1G259300.t1"; gene_id "Ledus.S1G259300"
Ledus.S1	AUGUSTUS	CDS	22155104	22155160	0.94	-	2	transcript_id "Ledus.S1G259300.t1"; gene_id "Ledus.S1G259300"
Ledus.S1	AUGUSTUS	exon	22155104	22155160	.	-	.	transcript_id "Ledus.S1G259300.t1"; gene_id "Ledus.S1G259300"
Ledus.S1	AUGUSTUS	intron	22155161	22155290	.	-	.	transcript_id "Ledus.S1G259300.t1"; gene_id "Ledus.S1G259300"
Ledus.S1	AUGUSTUS	CDS	22155291	22155333	0.6	-	0	transcript_id "Ledus.S1G259300.t1"; gene_id "Ledus.S1G259300"
Ledus.S1	AUGUSTUS	exon	22155291	22155333	.	-	.	transcript_id "Ledus.S1G259300.t1"; gene_id "Ledus.S1G259300"
Ledus.S1	AUGUSTUS	start_codon	22155331	22155333	.	-	0	transcript_id "Ledus.S1G259300.t1"; gene_id "Ledus.S1G259300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6823.t1 is derived from g4267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34500869	34501760	.	+	.	Ledus.S1G424400
Ledus.S1	AUGUSTUS	transcript	34500869	34501760	.	+	.	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	start_codon	34500869	34500871	.	+	0	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	CDS	34500869	34500988	0.49	+	0	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	exon	34500869	34500988	.	+	.	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	intron	34500989	34501073	.	+	.	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	CDS	34501074	34501134	1	+	0	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	exon	34501074	34501134	.	+	.	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	intron	34501135	34501229	.	+	.	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	CDS	34501230	34501662	1	+	2	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	exon	34501230	34501662	.	+	.	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	intron	34501663	34501741	.	+	.	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	CDS	34501742	34501760	0.97	+	1	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	exon	34501742	34501760	.	+	.	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
Ledus.S1	AUGUSTUS	stop_codon	34501761	34501763	.	+	0	transcript_id "Ledus.S1G424400.t1"; gene_id "Ledus.S1G424400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6913.t1 is derived from g4357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35170315	35170617	.	+	.	Ledus.S1G433400
Ledus.S1	AUGUSTUS	transcript	35170315	35170617	.	+	.	transcript_id "Ledus.S1G433400.t1"; gene_id "Ledus.S1G433400"
Ledus.S1	AUGUSTUS	start_codon	35170315	35170317	.	+	0	transcript_id "Ledus.S1G433400.t1"; gene_id "Ledus.S1G433400"
Ledus.S1	AUGUSTUS	CDS	35170315	35170617	1	+	0	transcript_id "Ledus.S1G433400.t1"; gene_id "Ledus.S1G433400"
Ledus.S1	AUGUSTUS	exon	35170315	35170617	.	+	.	transcript_id "Ledus.S1G433400.t1"; gene_id "Ledus.S1G433400"
Ledus.S1	AUGUSTUS	stop_codon	35170618	35170620	.	+	0	transcript_id "Ledus.S1G433400.t1"; gene_id "Ledus.S1G433400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2569.t1 is derived from g9432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19018882	19021564	.	-	.	Ledus.S2G245100
Ledus.S2	AUGUSTUS	transcript	19018882	19021564	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	stop_codon	19018879	19018881	.	-	0	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	CDS	19018882	19019038	1	-	1	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	exon	19018882	19019038	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	intron	19019039	19019111	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	CDS	19019112	19019300	1	-	1	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	exon	19019112	19019300	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	intron	19019301	19019397	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	CDS	19019398	19019597	1	-	0	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	exon	19019398	19019597	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	intron	19019598	19019675	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	CDS	19019676	19019789	1	-	0	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	exon	19019676	19019789	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	intron	19019790	19019872	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	CDS	19019873	19020009	1	-	2	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	exon	19019873	19020009	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	intron	19020010	19020104	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	CDS	19020105	19020215	1	-	2	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	exon	19020105	19020215	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	intron	19020216	19020308	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	CDS	19020309	19020561	1	-	0	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	exon	19020309	19020561	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	intron	19020562	19020652	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	CDS	19020653	19020751	1	-	0	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	exon	19020653	19020751	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	intron	19020752	19020830	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	CDS	19020831	19021130	1	-	0	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	exon	19020831	19021130	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	intron	19021131	19021276	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	CDS	19021277	19021564	0.89	-	0	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	exon	19021277	19021564	.	-	.	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
Ledus.S2	AUGUSTUS	start_codon	19021562	19021564	.	-	0	transcript_id "Ledus.S2G245100.t1"; gene_id "Ledus.S2G245100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4698.t1 is derived from g2136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19120697	19121887	.	-	.	Ledus.S1G211900
Ledus.S1	AUGUSTUS	transcript	19120697	19121887	.	-	.	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	stop_codon	19120694	19120696	.	-	0	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	CDS	19120697	19120761	0.94	-	2	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	exon	19120697	19120761	.	-	.	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	intron	19120762	19120849	.	-	.	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	CDS	19120850	19120955	1	-	0	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	exon	19120850	19120955	.	-	.	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	intron	19120956	19121026	.	-	.	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	CDS	19121027	19121122	1	-	0	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	exon	19121027	19121122	.	-	.	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	intron	19121123	19121193	.	-	.	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	CDS	19121194	19121315	1	-	2	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	exon	19121194	19121315	.	-	.	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	intron	19121316	19121392	.	-	.	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	CDS	19121393	19121465	1	-	0	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	exon	19121393	19121465	.	-	.	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	intron	19121466	19121548	.	-	.	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	CDS	19121549	19121887	0.91	-	0	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	exon	19121549	19121887	.	-	.	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
Ledus.S1	AUGUSTUS	start_codon	19121885	19121887	.	-	0	transcript_id "Ledus.S1G211900.t1"; gene_id "Ledus.S1G211900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9100.t1 is derived from g10130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4580093	4580590	.	+	.	Ledus.S3G057700
Ledus.S3	AUGUSTUS	transcript	4580093	4580590	.	+	.	transcript_id "Ledus.S3G057700.t1"; gene_id "Ledus.S3G057700"
Ledus.S3	AUGUSTUS	start_codon	4580093	4580095	.	+	0	transcript_id "Ledus.S3G057700.t1"; gene_id "Ledus.S3G057700"
Ledus.S3	AUGUSTUS	CDS	4580093	4580590	0.95	+	0	transcript_id "Ledus.S3G057700.t1"; gene_id "Ledus.S3G057700"
Ledus.S3	AUGUSTUS	exon	4580093	4580590	.	+	.	transcript_id "Ledus.S3G057700.t1"; gene_id "Ledus.S3G057700"
Ledus.S3	AUGUSTUS	stop_codon	4580591	4580593	.	+	0	transcript_id "Ledus.S3G057700.t1"; gene_id "Ledus.S3G057700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1845.t1 is derived from g8708.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12927851	12928969	.	-	.	Ledus.S2G172700
Ledus.S2	AUGUSTUS	transcript	12927851	12928969	.	-	.	transcript_id "Ledus.S2G172700.t1"; gene_id "Ledus.S2G172700"
Ledus.S2	AUGUSTUS	stop_codon	12927848	12927850	.	-	0	transcript_id "Ledus.S2G172700.t1"; gene_id "Ledus.S2G172700"
Ledus.S2	AUGUSTUS	CDS	12927851	12928773	0.62	-	2	transcript_id "Ledus.S2G172700.t1"; gene_id "Ledus.S2G172700"
Ledus.S2	AUGUSTUS	exon	12927851	12928773	.	-	.	transcript_id "Ledus.S2G172700.t1"; gene_id "Ledus.S2G172700"
Ledus.S2	AUGUSTUS	intron	12928774	12928866	.	-	.	transcript_id "Ledus.S2G172700.t1"; gene_id "Ledus.S2G172700"
Ledus.S2	AUGUSTUS	CDS	12928867	12928969	0.59	-	0	transcript_id "Ledus.S2G172700.t1"; gene_id "Ledus.S2G172700"
Ledus.S2	AUGUSTUS	exon	12928867	12928969	.	-	.	transcript_id "Ledus.S2G172700.t1"; gene_id "Ledus.S2G172700"
Ledus.S2	AUGUSTUS	start_codon	12928967	12928969	.	-	0	transcript_id "Ledus.S2G172700.t1"; gene_id "Ledus.S2G172700"
Ledus.S2	AUGUSTUS	transcript	12927851	12928129	.	-	.	transcript_id "Ledus.S2G172700.t2"; gene_id "Ledus.S2G172700"
Ledus.S2	AUGUSTUS	stop_codon	12927848	12927850	.	-	0	transcript_id "Ledus.S2G172700.t2"; gene_id "Ledus.S2G172700"
Ledus.S2	AUGUSTUS	CDS	12927851	12928129	0.79	-	0	transcript_id "Ledus.S2G172700.t2"; gene_id "Ledus.S2G172700"
Ledus.S2	AUGUSTUS	exon	12927851	12928129	.	-	.	transcript_id "Ledus.S2G172700.t2"; gene_id "Ledus.S2G172700"
Ledus.S2	AUGUSTUS	start_codon	12928127	12928129	.	-	0	transcript_id "Ledus.S2G172700.t2"; gene_id "Ledus.S2G172700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12420.t1 is derived from g6041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11949161	11949835	.	+	.	Ledus.S4G157600
Ledus.S4	AUGUSTUS	transcript	11949161	11949835	.	+	.	transcript_id "Ledus.S4G157600.t1"; gene_id "Ledus.S4G157600"
Ledus.S4	AUGUSTUS	start_codon	11949161	11949163	.	+	0	transcript_id "Ledus.S4G157600.t1"; gene_id "Ledus.S4G157600"
Ledus.S4	AUGUSTUS	CDS	11949161	11949288	0.55	+	0	transcript_id "Ledus.S4G157600.t1"; gene_id "Ledus.S4G157600"
Ledus.S4	AUGUSTUS	exon	11949161	11949288	.	+	.	transcript_id "Ledus.S4G157600.t1"; gene_id "Ledus.S4G157600"
Ledus.S4	AUGUSTUS	intron	11949289	11949582	.	+	.	transcript_id "Ledus.S4G157600.t1"; gene_id "Ledus.S4G157600"
Ledus.S4	AUGUSTUS	CDS	11949583	11949835	0.6	+	1	transcript_id "Ledus.S4G157600.t1"; gene_id "Ledus.S4G157600"
Ledus.S4	AUGUSTUS	exon	11949583	11949835	.	+	.	transcript_id "Ledus.S4G157600.t1"; gene_id "Ledus.S4G157600"
Ledus.S4	AUGUSTUS	stop_codon	11949836	11949838	.	+	0	transcript_id "Ledus.S4G157600.t1"; gene_id "Ledus.S4G157600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13141.t1 is derived from g6951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7137992	7138369	.	+	.	Ledus.S6G020300
Ledus.S6	AUGUSTUS	transcript	7137992	7138369	.	+	.	transcript_id "Ledus.S6G020300.t1"; gene_id "Ledus.S6G020300"
Ledus.S6	AUGUSTUS	start_codon	7137992	7137994	.	+	0	transcript_id "Ledus.S6G020300.t1"; gene_id "Ledus.S6G020300"
Ledus.S6	AUGUSTUS	CDS	7137992	7138369	0.96	+	0	transcript_id "Ledus.S6G020300.t1"; gene_id "Ledus.S6G020300"
Ledus.S6	AUGUSTUS	exon	7137992	7138369	.	+	.	transcript_id "Ledus.S6G020300.t1"; gene_id "Ledus.S6G020300"
Ledus.S6	AUGUSTUS	stop_codon	7138370	7138372	.	+	0	transcript_id "Ledus.S6G020300.t1"; gene_id "Ledus.S6G020300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12480.t1 is derived from g6101.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12295935	12307944	.	+	.	Ledus.S4G163600
Ledus.S4	AUGUSTUS	transcript	12295935	12307944	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	start_codon	12295935	12295937	.	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12295935	12296306	0.92	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12295935	12296306	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12296307	12296407	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12296408	12296509	1	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12296408	12296509	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12296510	12296750	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12296751	12296858	1	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12296751	12296858	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12296859	12296991	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12296992	12297072	1	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12296992	12297072	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12297073	12297243	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12297244	12297332	1	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12297244	12297332	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12297333	12297600	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12297601	12301385	0.99	+	1	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12297601	12301385	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12301386	12301558	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12301559	12301623	1	+	2	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12301559	12301623	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12301624	12301710	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12301711	12301766	1	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12301711	12301766	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12301767	12301915	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12301916	12302735	0.96	+	1	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12301916	12302735	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12302736	12302888	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12302889	12303478	0.99	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12302889	12303478	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12303479	12303708	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12303709	12304009	0.88	+	1	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12303709	12304009	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12304010	12304083	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12304084	12304139	0.64	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12304084	12304139	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12304140	12304248	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12304249	12304294	0.69	+	1	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12304249	12304294	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12304295	12304425	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12304426	12305518	0.51	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12304426	12305518	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12305519	12305896	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12305897	12305958	0.28	+	2	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12305897	12305958	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12305959	12306039	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12306040	12306128	0.29	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12306040	12306128	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12306129	12306230	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12306231	12306280	0.48	+	1	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12306231	12306280	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12306281	12306358	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12306359	12306411	0.44	+	2	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12306359	12306411	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12306412	12306520	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12306521	12306586	0.56	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12306521	12306586	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12306587	12306675	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12306676	12306716	0.97	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12306676	12306716	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12306717	12306821	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12306822	12306958	0.96	+	1	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12306822	12306958	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12306959	12307054	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12307055	12307145	1	+	2	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12307055	12307145	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12307146	12307310	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12307311	12307382	1	+	1	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12307311	12307382	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12307383	12307480	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12307481	12307593	1	+	1	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12307481	12307593	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	intron	12307594	12307780	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	CDS	12307781	12307944	0.75	+	2	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	exon	12307781	12307944	.	+	.	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
Ledus.S4	AUGUSTUS	stop_codon	12307945	12307947	.	+	0	transcript_id "Ledus.S4G163600.t1"; gene_id "Ledus.S4G163600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg309.t1 is derived from g7170.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1546757	1551694	.	-	.	Ledus.S2G019100
Ledus.S2	AUGUSTUS	transcript	1546757	1551694	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	stop_codon	1546754	1546756	.	-	0	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1546757	1546888	0.99	-	0	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1546757	1546888	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1546889	1547447	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1547448	1547681	1	-	0	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1547448	1547681	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1547682	1547876	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1547877	1548181	1	-	2	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1547877	1548181	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1548182	1548324	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1548325	1548551	1	-	1	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1548325	1548551	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1548552	1548754	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1548755	1548826	1	-	1	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1548755	1548826	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1548827	1548983	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1548984	1549081	1	-	0	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1548984	1549081	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1549082	1549223	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1549224	1549280	1	-	0	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1549224	1549280	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1549281	1549463	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1549464	1549626	1	-	1	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1549464	1549626	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1549627	1549808	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1549809	1549872	1	-	2	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1549809	1549872	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1549873	1550022	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1550023	1550163	1	-	2	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1550023	1550163	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1550164	1551363	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1551364	1551694	0.9	-	0	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1551364	1551694	.	-	.	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	start_codon	1551692	1551694	.	-	0	transcript_id "Ledus.S2G019100.t1"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	transcript	1546757	1551694	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	stop_codon	1546754	1546756	.	-	0	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1546757	1546888	1	-	0	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1546757	1546888	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1546889	1547447	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1547448	1547681	1	-	0	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1547448	1547681	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1547682	1547876	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1547877	1548181	1	-	2	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1547877	1548181	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1548182	1548324	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1548325	1548551	1	-	1	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1548325	1548551	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1548552	1548754	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1548755	1548826	1	-	1	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1548755	1548826	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1548827	1548983	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1548984	1549081	1	-	0	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1548984	1549081	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1549082	1549223	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1549224	1549280	1	-	0	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1549224	1549280	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1549281	1549463	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1549464	1549626	1	-	1	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1549464	1549626	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1549627	1549790	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1549791	1549872	1	-	2	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1549791	1549872	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1549873	1550022	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1550023	1550163	1	-	2	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1550023	1550163	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	intron	1550164	1551363	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	CDS	1551364	1551694	0.87	-	0	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	exon	1551364	1551694	.	-	.	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
Ledus.S2	AUGUSTUS	start_codon	1551692	1551694	.	-	0	transcript_id "Ledus.S2G019100.t2"; gene_id "Ledus.S2G019100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9991.t1 is derived from g11021.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11762394	11763723	.	-	.	Ledus.S3G146800
Ledus.S3	AUGUSTUS	transcript	11762394	11763723	.	-	.	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	stop_codon	11762391	11762393	.	-	0	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	CDS	11762394	11762552	0.75	-	0	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	exon	11762394	11762552	.	-	.	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	intron	11762553	11762629	.	-	.	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	CDS	11762630	11762743	1	-	0	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	exon	11762630	11762743	.	-	.	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	intron	11762744	11762842	.	-	.	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	CDS	11762843	11762928	0.99	-	2	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	exon	11762843	11762928	.	-	.	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	intron	11762929	11763035	.	-	.	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	CDS	11763036	11763273	0.94	-	0	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	exon	11763036	11763273	.	-	.	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	intron	11763274	11763395	.	-	.	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	CDS	11763396	11763488	0.95	-	0	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	exon	11763396	11763488	.	-	.	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	intron	11763489	11763657	.	-	.	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	CDS	11763658	11763723	0.94	-	0	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	exon	11763658	11763723	.	-	.	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
Ledus.S3	AUGUSTUS	start_codon	11763721	11763723	.	-	0	transcript_id "Ledus.S3G146800.t1"; gene_id "Ledus.S3G146800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg471.t1 is derived from g7332.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2762812	2764761	.	+	.	Ledus.S2G035300
Ledus.S2	AUGUSTUS	transcript	2762812	2764761	.	+	.	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	start_codon	2762812	2762814	.	+	0	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	CDS	2762812	2763112	0.98	+	0	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	exon	2762812	2763112	.	+	.	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	intron	2763113	2763197	.	+	.	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	CDS	2763198	2763421	1	+	2	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	exon	2763198	2763421	.	+	.	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	intron	2763422	2763500	.	+	.	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	CDS	2763501	2763760	1	+	0	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	exon	2763501	2763760	.	+	.	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	intron	2763761	2763835	.	+	.	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	CDS	2763836	2764232	1	+	1	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	exon	2763836	2764232	.	+	.	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	intron	2764233	2764323	.	+	.	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	CDS	2764324	2764761	1	+	0	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	exon	2764324	2764761	.	+	.	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
Ledus.S2	AUGUSTUS	stop_codon	2764762	2764764	.	+	0	transcript_id "Ledus.S2G035300.t1"; gene_id "Ledus.S2G035300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2157.t1 is derived from g9020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15338954	15339220	.	+	.	Ledus.S2G203900
Ledus.S2	AUGUSTUS	transcript	15338954	15339220	.	+	.	transcript_id "Ledus.S2G203900.t1"; gene_id "Ledus.S2G203900"
Ledus.S2	AUGUSTUS	start_codon	15338954	15338956	.	+	0	transcript_id "Ledus.S2G203900.t1"; gene_id "Ledus.S2G203900"
Ledus.S2	AUGUSTUS	CDS	15338954	15339220	0.45	+	0	transcript_id "Ledus.S2G203900.t1"; gene_id "Ledus.S2G203900"
Ledus.S2	AUGUSTUS	exon	15338954	15339220	.	+	.	transcript_id "Ledus.S2G203900.t1"; gene_id "Ledus.S2G203900"
Ledus.S2	AUGUSTUS	stop_codon	15339221	15339223	.	+	0	transcript_id "Ledus.S2G203900.t1"; gene_id "Ledus.S2G203900"
# This transcript jg10762.t2 is derived from g11794.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10763.t1 is derived from g11795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17526465	17528570	.	-	.	Ledus.S3G224000
Ledus.S3	AUGUSTUS	transcript	17526465	17528444	.	-	.	transcript_id "Ledus.S3G224000.t1"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	stop_codon	17526462	17526464	.	-	0	transcript_id "Ledus.S3G224000.t1"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	CDS	17526465	17528444	0.99	-	0	transcript_id "Ledus.S3G224000.t1"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	exon	17526465	17528444	.	-	.	transcript_id "Ledus.S3G224000.t1"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	start_codon	17528442	17528444	.	-	0	transcript_id "Ledus.S3G224000.t1"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	transcript	17526465	17528570	.	-	.	transcript_id "Ledus.S3G224000.t2"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	stop_codon	17526462	17526464	.	-	0	transcript_id "Ledus.S3G224000.t2"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	CDS	17526465	17528570	0.98	-	0	transcript_id "Ledus.S3G224000.t2"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	exon	17526465	17528570	.	-	.	transcript_id "Ledus.S3G224000.t2"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	start_codon	17528568	17528570	.	-	0	transcript_id "Ledus.S3G224000.t2"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	transcript	17526465	17528552	.	-	.	transcript_id "Ledus.S3G224000.t3"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	stop_codon	17526462	17526464	.	-	0	transcript_id "Ledus.S3G224000.t3"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	CDS	17526465	17528552	0.96	-	0	transcript_id "Ledus.S3G224000.t3"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	exon	17526465	17528552	.	-	.	transcript_id "Ledus.S3G224000.t3"; gene_id "Ledus.S3G224000"
Ledus.S3	AUGUSTUS	start_codon	17528550	17528552	.	-	0	transcript_id "Ledus.S3G224000.t3"; gene_id "Ledus.S3G224000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4582.t1 is derived from g2019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17900807	17904504	.	+	.	Ledus.S1G200300
Ledus.S1	AUGUSTUS	transcript	17900807	17904504	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	start_codon	17900807	17900809	.	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17900807	17900950	0.93	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17900807	17900950	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17900951	17901052	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17901053	17901100	0.98	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17901053	17901100	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17901101	17901186	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17901187	17901335	1	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17901187	17901335	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17901336	17901434	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17901435	17901483	1	+	1	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17901435	17901483	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17901484	17901601	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17901602	17901658	0.99	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17901602	17901658	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17901659	17901766	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17901767	17901952	1	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17901767	17901952	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17901953	17902070	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17902071	17902211	1	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17902071	17902211	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17902212	17902454	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17902455	17902516	1	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17902455	17902516	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17902517	17902743	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17902744	17902840	1	+	1	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17902744	17902840	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17902841	17902927	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17902928	17903039	0.97	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17902928	17903039	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17903040	17903146	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17903147	17903223	1	+	2	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17903147	17903223	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17903224	17903431	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17903432	17903569	1	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17903432	17903569	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17903570	17903674	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17903675	17903839	1	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17903675	17903839	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17903840	17903955	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17903956	17904069	0.99	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17903956	17904069	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17904070	17904186	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17904187	17904280	1	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17904187	17904280	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	intron	17904281	17904394	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	CDS	17904395	17904504	1	+	2	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	exon	17904395	17904504	.	+	.	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
Ledus.S1	AUGUSTUS	stop_codon	17904505	17904507	.	+	0	transcript_id "Ledus.S1G200300.t1"; gene_id "Ledus.S1G200300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10245.t1 is derived from g11275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13799390	13800782	.	+	.	Ledus.S3G172200
Ledus.S3	AUGUSTUS	transcript	13799390	13800782	.	+	.	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	start_codon	13799390	13799392	.	+	0	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	CDS	13799390	13799782	0.64	+	0	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	exon	13799390	13799782	.	+	.	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	intron	13799783	13799933	.	+	.	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	CDS	13799934	13800092	0.76	+	0	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	exon	13799934	13800092	.	+	.	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	intron	13800093	13800194	.	+	.	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	CDS	13800195	13800281	0.98	+	0	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	exon	13800195	13800281	.	+	.	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	intron	13800282	13800399	.	+	.	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	CDS	13800400	13800520	1	+	0	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	exon	13800400	13800520	.	+	.	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	intron	13800521	13800618	.	+	.	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	CDS	13800619	13800782	1	+	2	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	exon	13800619	13800782	.	+	.	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
Ledus.S3	AUGUSTUS	stop_codon	13800783	13800785	.	+	0	transcript_id "Ledus.S3G172200.t1"; gene_id "Ledus.S3G172200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4173.t1 is derived from g1609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15191045	15191801	.	-	.	Ledus.S1G159400
Ledus.S1	AUGUSTUS	transcript	15191045	15191801	.	-	.	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	stop_codon	15191042	15191044	.	-	0	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	CDS	15191045	15191185	0.75	-	0	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	exon	15191045	15191185	.	-	.	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	intron	15191186	15191363	.	-	.	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	CDS	15191364	15191397	0.91	-	1	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	exon	15191364	15191397	.	-	.	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	intron	15191398	15191601	.	-	.	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	CDS	15191602	15191607	0.54	-	1	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	exon	15191602	15191607	.	-	.	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	intron	15191608	15191739	.	-	.	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	CDS	15191740	15191801	0.98	-	0	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	exon	15191740	15191801	.	-	.	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
Ledus.S1	AUGUSTUS	start_codon	15191799	15191801	.	-	0	transcript_id "Ledus.S1G159400.t1"; gene_id "Ledus.S1G159400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4341.t1 is derived from g1777.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16468576	16470414	.	-	.	Ledus.S1G176200
Ledus.S1	AUGUSTUS	transcript	16468576	16470414	.	-	.	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	stop_codon	16468573	16468575	.	-	0	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	CDS	16468576	16468880	1	-	2	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	exon	16468576	16468880	.	-	.	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	intron	16468881	16468957	.	-	.	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	CDS	16468958	16469072	1	-	0	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	exon	16468958	16469072	.	-	.	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	intron	16469073	16469158	.	-	.	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	CDS	16469159	16470234	0.9	-	2	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	exon	16469159	16470234	.	-	.	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	intron	16470235	16470341	.	-	.	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	CDS	16470342	16470414	0.8	-	0	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	exon	16470342	16470414	.	-	.	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
Ledus.S1	AUGUSTUS	start_codon	16470412	16470414	.	-	0	transcript_id "Ledus.S1G176200.t1"; gene_id "Ledus.S1G176200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5829.t1 is derived from g3271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27178929	27182406	.	-	.	Ledus.S1G325000
Ledus.S1	AUGUSTUS	transcript	27178929	27182406	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	stop_codon	27178495	27178497	.	-	0	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	CDS	27178929	27179073	0.87	-	1	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	exon	27178929	27179073	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	intron	27179074	27179467	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	CDS	27179468	27179712	0.6	-	0	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	exon	27179468	27179712	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	intron	27179713	27179798	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	CDS	27179799	27180056	1	-	0	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	exon	27179799	27180056	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	intron	27180057	27180156	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	CDS	27180157	27180197	0.65	-	2	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	exon	27180157	27180197	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	intron	27180198	27180267	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	CDS	27180268	27180333	0.49	-	2	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	exon	27180268	27180333	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	intron	27180334	27180715	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	CDS	27180716	27181057	0.89	-	2	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	exon	27180716	27181057	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	intron	27181058	27181146	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	CDS	27181147	27181351	0.99	-	0	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	exon	27181147	27181351	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	intron	27181352	27181463	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	CDS	27181464	27182276	0.95	-	0	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	exon	27181464	27182276	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	intron	27182277	27182364	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	CDS	27182365	27182406	0.95	-	0	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	exon	27182365	27182406	.	-	.	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
Ledus.S1	AUGUSTUS	start_codon	27182404	27182406	.	-	0	transcript_id "Ledus.S1G325000.t1"; gene_id "Ledus.S1G325000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8924.t1 is derived from g9954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3165797	3167964	.	-	.	Ledus.S3G040100
Ledus.S3	AUGUSTUS	transcript	3165797	3167964	.	-	.	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	stop_codon	3165794	3165796	.	-	0	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	CDS	3165797	3165799	1	-	0	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	exon	3165797	3165799	.	-	.	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	intron	3165800	3165881	.	-	.	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	CDS	3165882	3166097	1	-	0	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	exon	3165882	3166097	.	-	.	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	intron	3166098	3166202	.	-	.	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	CDS	3166203	3166570	0.94	-	2	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	exon	3166203	3166570	.	-	.	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	intron	3166571	3166658	.	-	.	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	CDS	3166659	3166943	1	-	2	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	exon	3166659	3166943	.	-	.	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	intron	3166944	3167056	.	-	.	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	CDS	3167057	3167193	1	-	1	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	exon	3167057	3167193	.	-	.	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	intron	3167194	3167293	.	-	.	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	CDS	3167294	3167964	0.85	-	0	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	exon	3167294	3167964	.	-	.	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
Ledus.S3	AUGUSTUS	start_codon	3167962	3167964	.	-	0	transcript_id "Ledus.S3G040100.t1"; gene_id "Ledus.S3G040100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7888.t1 is derived from g12559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7692867	7694012	.	+	.	Ledus.S5G066600
Ledus.S5	AUGUSTUS	transcript	7692867	7694012	.	+	.	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	start_codon	7692867	7692869	.	+	0	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	CDS	7692867	7692926	0.37	+	0	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	exon	7692867	7692926	.	+	.	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	intron	7692927	7693073	.	+	.	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	CDS	7693074	7693104	0.91	+	0	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	exon	7693074	7693104	.	+	.	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	intron	7693105	7693223	.	+	.	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	CDS	7693224	7693449	0.91	+	2	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	exon	7693224	7693449	.	+	.	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	intron	7693450	7693599	.	+	.	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	CDS	7693600	7693782	0.72	+	1	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	exon	7693600	7693782	.	+	.	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	intron	7693783	7693911	.	+	.	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	CDS	7693912	7693930	0.83	+	1	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	exon	7693912	7693930	.	+	.	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	intron	7693931	7694009	.	+	.	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	CDS	7694010	7694012	0.83	+	0	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	exon	7694010	7694012	.	+	.	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
Ledus.S5	AUGUSTUS	stop_codon	7694013	7694015	.	+	0	transcript_id "Ledus.S5G066600.t1"; gene_id "Ledus.S5G066600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11895.t1 is derived from g5514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7573938	7575443	.	-	.	Ledus.S4G105100
Ledus.S4	AUGUSTUS	transcript	7573938	7575443	.	-	.	transcript_id "Ledus.S4G105100.t1"; gene_id "Ledus.S4G105100"
Ledus.S4	AUGUSTUS	stop_codon	7573935	7573937	.	-	0	transcript_id "Ledus.S4G105100.t1"; gene_id "Ledus.S4G105100"
Ledus.S4	AUGUSTUS	CDS	7573938	7575443	0.96	-	0	transcript_id "Ledus.S4G105100.t1"; gene_id "Ledus.S4G105100"
Ledus.S4	AUGUSTUS	exon	7573938	7575443	.	-	.	transcript_id "Ledus.S4G105100.t1"; gene_id "Ledus.S4G105100"
Ledus.S4	AUGUSTUS	start_codon	7575441	7575443	.	-	0	transcript_id "Ledus.S4G105100.t1"; gene_id "Ledus.S4G105100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12699.t1 is derived from g6321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13961656	13963845	.	-	.	Ledus.S4G185500
Ledus.S4	AUGUSTUS	transcript	13961656	13963845	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	stop_codon	13961653	13961655	.	-	0	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	CDS	13961656	13961713	0.92	-	1	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	exon	13961656	13961713	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	intron	13961714	13961800	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	CDS	13961801	13962017	1	-	2	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	exon	13961801	13962017	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	intron	13962018	13962093	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	CDS	13962094	13962257	1	-	1	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	exon	13962094	13962257	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	intron	13962258	13962338	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	CDS	13962339	13962591	1	-	2	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	exon	13962339	13962591	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	intron	13962592	13962831	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	CDS	13962832	13963053	0.83	-	2	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	exon	13962832	13963053	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	intron	13963054	13963170	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	CDS	13963171	13963375	0.8	-	0	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	exon	13963171	13963375	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	intron	13963376	13963467	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	CDS	13963468	13963574	0.95	-	2	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	exon	13963468	13963574	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	intron	13963575	13963682	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	CDS	13963683	13963845	0.44	-	0	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	exon	13963683	13963845	.	-	.	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
Ledus.S4	AUGUSTUS	start_codon	13963843	13963845	.	-	0	transcript_id "Ledus.S4G185500.t1"; gene_id "Ledus.S4G185500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10924.t1 is derived from g4542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	622424	623329	.	-	.	Ledus.S4G008000
Ledus.S4	AUGUSTUS	transcript	622424	623329	.	-	.	transcript_id "Ledus.S4G008000.t1"; gene_id "Ledus.S4G008000"
Ledus.S4	AUGUSTUS	stop_codon	622421	622423	.	-	0	transcript_id "Ledus.S4G008000.t1"; gene_id "Ledus.S4G008000"
Ledus.S4	AUGUSTUS	CDS	622424	623215	0.6	-	0	transcript_id "Ledus.S4G008000.t1"; gene_id "Ledus.S4G008000"
Ledus.S4	AUGUSTUS	exon	622424	623215	.	-	.	transcript_id "Ledus.S4G008000.t1"; gene_id "Ledus.S4G008000"
Ledus.S4	AUGUSTUS	intron	623216	623293	.	-	.	transcript_id "Ledus.S4G008000.t1"; gene_id "Ledus.S4G008000"
Ledus.S4	AUGUSTUS	CDS	623294	623329	0.73	-	0	transcript_id "Ledus.S4G008000.t1"; gene_id "Ledus.S4G008000"
Ledus.S4	AUGUSTUS	exon	623294	623329	.	-	.	transcript_id "Ledus.S4G008000.t1"; gene_id "Ledus.S4G008000"
Ledus.S4	AUGUSTUS	start_codon	623327	623329	.	-	0	transcript_id "Ledus.S4G008000.t1"; gene_id "Ledus.S4G008000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6887.t1 is derived from g4331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34982061	34983439	.	-	.	Ledus.S1G430800
Ledus.S1	AUGUSTUS	transcript	34982061	34983439	.	-	.	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	stop_codon	34982058	34982060	.	-	0	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	CDS	34982061	34982217	1	-	1	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	exon	34982061	34982217	.	-	.	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	intron	34982218	34982300	.	-	.	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	CDS	34982301	34982689	1	-	0	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	exon	34982301	34982689	.	-	.	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	intron	34982690	34982768	.	-	.	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	CDS	34982769	34983181	1	-	2	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	exon	34982769	34983181	.	-	.	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	intron	34983182	34983288	.	-	.	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	CDS	34983289	34983439	0.95	-	0	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	exon	34983289	34983439	.	-	.	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
Ledus.S1	AUGUSTUS	start_codon	34983437	34983439	.	-	0	transcript_id "Ledus.S1G430800.t1"; gene_id "Ledus.S1G430800"
# This transcript jg4958.t2 is derived from g2396.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4959.t1 is derived from g2397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20888533	20889754	.	+	.	Ledus.S1G238000
Ledus.S1	AUGUSTUS	transcript	20888533	20889754	.	+	.	transcript_id "Ledus.S1G238000.t1"; gene_id "Ledus.S1G238000"
Ledus.S1	AUGUSTUS	start_codon	20888533	20888535	.	+	0	transcript_id "Ledus.S1G238000.t1"; gene_id "Ledus.S1G238000"
Ledus.S1	AUGUSTUS	CDS	20888533	20889109	0.73	+	0	transcript_id "Ledus.S1G238000.t1"; gene_id "Ledus.S1G238000"
Ledus.S1	AUGUSTUS	exon	20888533	20889109	.	+	.	transcript_id "Ledus.S1G238000.t1"; gene_id "Ledus.S1G238000"
Ledus.S1	AUGUSTUS	intron	20889110	20889215	.	+	.	transcript_id "Ledus.S1G238000.t1"; gene_id "Ledus.S1G238000"
Ledus.S1	AUGUSTUS	CDS	20889216	20889343	0.98	+	2	transcript_id "Ledus.S1G238000.t1"; gene_id "Ledus.S1G238000"
Ledus.S1	AUGUSTUS	exon	20889216	20889343	.	+	.	transcript_id "Ledus.S1G238000.t1"; gene_id "Ledus.S1G238000"
Ledus.S1	AUGUSTUS	intron	20889344	20889439	.	+	.	transcript_id "Ledus.S1G238000.t1"; gene_id "Ledus.S1G238000"
Ledus.S1	AUGUSTUS	CDS	20889440	20889754	0.66	+	0	transcript_id "Ledus.S1G238000.t1"; gene_id "Ledus.S1G238000"
Ledus.S1	AUGUSTUS	exon	20889440	20889754	.	+	.	transcript_id "Ledus.S1G238000.t1"; gene_id "Ledus.S1G238000"
Ledus.S1	AUGUSTUS	stop_codon	20889755	20889757	.	+	0	transcript_id "Ledus.S1G238000.t1"; gene_id "Ledus.S1G238000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5764.t1 is derived from g3205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26636190	26637368	.	+	.	Ledus.S1G318500
Ledus.S1	AUGUSTUS	transcript	26636190	26637368	.	+	.	transcript_id "Ledus.S1G318500.t1"; gene_id "Ledus.S1G318500"
Ledus.S1	AUGUSTUS	start_codon	26636190	26636192	.	+	0	transcript_id "Ledus.S1G318500.t1"; gene_id "Ledus.S1G318500"
Ledus.S1	AUGUSTUS	CDS	26636190	26636493	0.97	+	0	transcript_id "Ledus.S1G318500.t1"; gene_id "Ledus.S1G318500"
Ledus.S1	AUGUSTUS	exon	26636190	26636493	.	+	.	transcript_id "Ledus.S1G318500.t1"; gene_id "Ledus.S1G318500"
Ledus.S1	AUGUSTUS	intron	26636494	26636568	.	+	.	transcript_id "Ledus.S1G318500.t1"; gene_id "Ledus.S1G318500"
Ledus.S1	AUGUSTUS	CDS	26636569	26637368	1	+	2	transcript_id "Ledus.S1G318500.t1"; gene_id "Ledus.S1G318500"
Ledus.S1	AUGUSTUS	exon	26636569	26637368	.	+	.	transcript_id "Ledus.S1G318500.t1"; gene_id "Ledus.S1G318500"
Ledus.S1	AUGUSTUS	stop_codon	26637369	26637371	.	+	0	transcript_id "Ledus.S1G318500.t1"; gene_id "Ledus.S1G318500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4700.t1 is derived from g2138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19124185	19125339	.	-	.	Ledus.S1G212100
Ledus.S1	AUGUSTUS	transcript	19124185	19125339	.	-	.	transcript_id "Ledus.S1G212100.t1"; gene_id "Ledus.S1G212100"
Ledus.S1	AUGUSTUS	stop_codon	19124182	19124184	.	-	0	transcript_id "Ledus.S1G212100.t1"; gene_id "Ledus.S1G212100"
Ledus.S1	AUGUSTUS	CDS	19124185	19124253	1	-	0	transcript_id "Ledus.S1G212100.t1"; gene_id "Ledus.S1G212100"
Ledus.S1	AUGUSTUS	exon	19124185	19124253	.	-	.	transcript_id "Ledus.S1G212100.t1"; gene_id "Ledus.S1G212100"
Ledus.S1	AUGUSTUS	intron	19124254	19124411	.	-	.	transcript_id "Ledus.S1G212100.t1"; gene_id "Ledus.S1G212100"
Ledus.S1	AUGUSTUS	CDS	19124412	19124712	1	-	1	transcript_id "Ledus.S1G212100.t1"; gene_id "Ledus.S1G212100"
Ledus.S1	AUGUSTUS	exon	19124412	19124712	.	-	.	transcript_id "Ledus.S1G212100.t1"; gene_id "Ledus.S1G212100"
Ledus.S1	AUGUSTUS	intron	19124713	19124797	.	-	.	transcript_id "Ledus.S1G212100.t1"; gene_id "Ledus.S1G212100"
Ledus.S1	AUGUSTUS	CDS	19124798	19125339	0.92	-	0	transcript_id "Ledus.S1G212100.t1"; gene_id "Ledus.S1G212100"
Ledus.S1	AUGUSTUS	exon	19124798	19125339	.	-	.	transcript_id "Ledus.S1G212100.t1"; gene_id "Ledus.S1G212100"
Ledus.S1	AUGUSTUS	start_codon	19125337	19125339	.	-	0	transcript_id "Ledus.S1G212100.t1"; gene_id "Ledus.S1G212100"
# This transcript jg965.t2 is derived from g7827.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg966.t1 is derived from g7826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6372281	6372574	.	-	.	Ledus.S2G084700
Ledus.S2	AUGUSTUS	transcript	6372281	6372574	.	-	.	transcript_id "Ledus.S2G084700.t1"; gene_id "Ledus.S2G084700"
Ledus.S2	AUGUSTUS	stop_codon	6372278	6372280	.	-	0	transcript_id "Ledus.S2G084700.t1"; gene_id "Ledus.S2G084700"
Ledus.S2	AUGUSTUS	CDS	6372281	6372574	0.72	-	0	transcript_id "Ledus.S2G084700.t1"; gene_id "Ledus.S2G084700"
Ledus.S2	AUGUSTUS	exon	6372281	6372574	.	-	.	transcript_id "Ledus.S2G084700.t1"; gene_id "Ledus.S2G084700"
Ledus.S2	AUGUSTUS	start_codon	6372572	6372574	.	-	0	transcript_id "Ledus.S2G084700.t1"; gene_id "Ledus.S2G084700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3289.t1 is derived from g724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7295930	7298366	.	-	.	Ledus.S1G071000
Ledus.S1	AUGUSTUS	transcript	7295930	7298366	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	stop_codon	7295927	7295929	.	-	0	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7295930	7295981	1	-	1	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7295930	7295981	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	intron	7295982	7296067	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7296068	7296165	1	-	0	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7296068	7296165	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	intron	7296166	7296252	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7296253	7296378	1	-	0	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7296253	7296378	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	intron	7296379	7296487	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7296488	7296571	1	-	0	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7296488	7296571	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	intron	7296572	7296657	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7296658	7296774	1	-	0	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7296658	7296774	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	intron	7296775	7296872	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7296873	7296956	1	-	0	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7296873	7296956	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	intron	7296957	7297043	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7297044	7297091	1	-	0	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7297044	7297091	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	intron	7297092	7297182	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7297183	7297237	1	-	1	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7297183	7297237	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	intron	7297238	7297375	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7297376	7297431	1	-	0	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7297376	7297431	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	intron	7297432	7297552	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7297553	7297637	1	-	1	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7297553	7297637	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	intron	7297638	7297721	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7297722	7297795	1	-	0	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7297722	7297795	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	intron	7297796	7297971	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7297972	7298038	1	-	1	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7297972	7298038	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	intron	7298039	7298283	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	CDS	7298284	7298366	0.91	-	0	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	exon	7298284	7298366	.	-	.	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
Ledus.S1	AUGUSTUS	start_codon	7298364	7298366	.	-	0	transcript_id "Ledus.S1G071000.t1"; gene_id "Ledus.S1G071000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5227.t1 is derived from g2666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22591861	22594646	.	+	.	Ledus.S1G264800
Ledus.S1	AUGUSTUS	transcript	22591861	22594646	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	start_codon	22591861	22591863	.	+	0	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	CDS	22591861	22592048	0.57	+	0	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	exon	22591861	22592048	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	intron	22592049	22592137	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	CDS	22592138	22592330	0.93	+	1	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	exon	22592138	22592330	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	intron	22592331	22592428	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	CDS	22592429	22592493	0.92	+	0	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	exon	22592429	22592493	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	intron	22592494	22592591	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	CDS	22592592	22592694	0.77	+	1	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	exon	22592592	22592694	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	intron	22592695	22592786	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	CDS	22592787	22593476	0.68	+	0	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	exon	22592787	22593476	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	intron	22593477	22593590	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	CDS	22593591	22594556	0.87	+	0	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	exon	22593591	22594556	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	intron	22594557	22594640	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	CDS	22594641	22594646	0.72	+	0	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	exon	22594641	22594646	.	+	.	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
Ledus.S1	AUGUSTUS	stop_codon	22594647	22594649	.	+	0	transcript_id "Ledus.S1G264800.t1"; gene_id "Ledus.S1G264800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8450.t1 is derived from g13122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11750843	11753298	.	+	.	Ledus.S5G122800
Ledus.S5	AUGUSTUS	transcript	11750843	11753298	.	+	.	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	start_codon	11750843	11750845	.	+	0	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	CDS	11750843	11750884	0.75	+	0	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	exon	11750843	11750884	.	+	.	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	intron	11750885	11750973	.	+	.	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	CDS	11750974	11751261	0.85	+	0	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	exon	11750974	11751261	.	+	.	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	intron	11751262	11751376	.	+	.	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	CDS	11751377	11752336	0.95	+	0	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	exon	11751377	11752336	.	+	.	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	intron	11752337	11752448	.	+	.	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	CDS	11752449	11752528	1	+	0	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	exon	11752449	11752528	.	+	.	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	intron	11752529	11752676	.	+	.	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	CDS	11752677	11752748	1	+	1	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	exon	11752677	11752748	.	+	.	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	intron	11752749	11752889	.	+	.	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	CDS	11752890	11753298	0.84	+	1	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	exon	11752890	11753298	.	+	.	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
Ledus.S5	AUGUSTUS	stop_codon	11753299	11753301	.	+	0	transcript_id "Ledus.S5G122800.t1"; gene_id "Ledus.S5G122800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4701.t1 is derived from g2139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19125659	19126487	.	-	.	Ledus.S1G212200
Ledus.S1	AUGUSTUS	transcript	19125659	19126487	.	-	.	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	stop_codon	19125656	19125658	.	-	0	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	CDS	19125659	19125718	0.96	-	0	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	exon	19125659	19125718	.	-	.	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	intron	19125719	19125809	.	-	.	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	CDS	19125810	19125905	1	-	0	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	exon	19125810	19125905	.	-	.	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	intron	19125906	19126004	.	-	.	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	CDS	19126005	19126091	1	-	0	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	exon	19126005	19126091	.	-	.	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	intron	19126092	19126355	.	-	.	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	CDS	19126356	19126487	0.89	-	0	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	exon	19126356	19126487	.	-	.	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
Ledus.S1	AUGUSTUS	start_codon	19126485	19126487	.	-	0	transcript_id "Ledus.S1G212200.t1"; gene_id "Ledus.S1G212200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8620.t1 is derived from g9650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	738016	743066	.	+	.	Ledus.S3G009700
Ledus.S3	AUGUSTUS	transcript	738016	743066	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	start_codon	738016	738018	.	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	738016	738179	0.3	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	738016	738179	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	738180	738279	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	738280	738367	0.9	+	1	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	738280	738367	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	738368	738453	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	738454	738536	0.9	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	738454	738536	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	738537	738727	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	738728	738827	1	+	1	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	738728	738827	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	738828	739126	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	739127	739312	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	739127	739312	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	739313	739431	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	739432	739479	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	739432	739479	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	739480	739589	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	739590	739793	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	739590	739793	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	739794	739888	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	739889	739966	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	739889	739966	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	739967	740151	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	740152	740241	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	740152	740241	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	740242	740396	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	740397	740477	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	740397	740477	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	740478	740551	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	740552	740614	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	740552	740614	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	740615	740816	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	740817	740852	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	740817	740852	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	740853	740965	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	740966	741052	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	740966	741052	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	741053	741185	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	741186	741335	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	741186	741335	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	741336	741431	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	741432	741487	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	741432	741487	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	741488	741591	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	741592	741712	0.93	+	1	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	741592	741712	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	741713	741828	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	741829	741990	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	741829	741990	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	741991	742090	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	742091	742234	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	742091	742234	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	742235	742346	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	742347	742565	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	742347	742565	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	742566	742671	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	742672	742839	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	742672	742839	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	intron	742840	742967	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	CDS	742968	743066	1	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	exon	742968	743066	.	+	.	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
Ledus.S3	AUGUSTUS	stop_codon	743067	743069	.	+	0	transcript_id "Ledus.S3G009700.t1"; gene_id "Ledus.S3G009700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6467.t1 is derived from g3910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31400200	31400712	.	+	.	Ledus.S1G388800
Ledus.S1	AUGUSTUS	transcript	31400200	31400712	.	+	.	transcript_id "Ledus.S1G388800.t1"; gene_id "Ledus.S1G388800"
Ledus.S1	AUGUSTUS	start_codon	31400200	31400202	.	+	0	transcript_id "Ledus.S1G388800.t1"; gene_id "Ledus.S1G388800"
Ledus.S1	AUGUSTUS	CDS	31400200	31400712	0.8	+	0	transcript_id "Ledus.S1G388800.t1"; gene_id "Ledus.S1G388800"
Ledus.S1	AUGUSTUS	exon	31400200	31400712	.	+	.	transcript_id "Ledus.S1G388800.t1"; gene_id "Ledus.S1G388800"
Ledus.S1	AUGUSTUS	stop_codon	31400713	31400715	.	+	0	transcript_id "Ledus.S1G388800.t1"; gene_id "Ledus.S1G388800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1803.t1 is derived from g8666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12686503	12689376	.	-	.	Ledus.S2G168500
Ledus.S2	AUGUSTUS	transcript	12686503	12689376	.	-	.	transcript_id "Ledus.S2G168500.t1"; gene_id "Ledus.S2G168500"
Ledus.S2	AUGUSTUS	stop_codon	12686500	12686502	.	-	0	transcript_id "Ledus.S2G168500.t1"; gene_id "Ledus.S2G168500"
Ledus.S2	AUGUSTUS	CDS	12686503	12689376	0.89	-	0	transcript_id "Ledus.S2G168500.t1"; gene_id "Ledus.S2G168500"
Ledus.S2	AUGUSTUS	exon	12686503	12689376	.	-	.	transcript_id "Ledus.S2G168500.t1"; gene_id "Ledus.S2G168500"
Ledus.S2	AUGUSTUS	start_codon	12689374	12689376	.	-	0	transcript_id "Ledus.S2G168500.t1"; gene_id "Ledus.S2G168500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7193.t1 is derived from g6724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2060397	2061239	.	+	.	Ledus.C7G025400
Ledus.C7	AUGUSTUS	transcript	2060397	2061239	.	+	.	transcript_id "Ledus.C7G025400.t1"; gene_id "Ledus.C7G025400"
Ledus.C7	AUGUSTUS	start_codon	2060397	2060399	.	+	0	transcript_id "Ledus.C7G025400.t1"; gene_id "Ledus.C7G025400"
Ledus.C7	AUGUSTUS	CDS	2060397	2060553	0.36	+	0	transcript_id "Ledus.C7G025400.t1"; gene_id "Ledus.C7G025400"
Ledus.C7	AUGUSTUS	exon	2060397	2060553	.	+	.	transcript_id "Ledus.C7G025400.t1"; gene_id "Ledus.C7G025400"
Ledus.C7	AUGUSTUS	intron	2060554	2060622	.	+	.	transcript_id "Ledus.C7G025400.t1"; gene_id "Ledus.C7G025400"
Ledus.C7	AUGUSTUS	CDS	2060623	2060691	0.31	+	2	transcript_id "Ledus.C7G025400.t1"; gene_id "Ledus.C7G025400"
Ledus.C7	AUGUSTUS	exon	2060623	2060691	.	+	.	transcript_id "Ledus.C7G025400.t1"; gene_id "Ledus.C7G025400"
Ledus.C7	AUGUSTUS	intron	2060692	2061198	.	+	.	transcript_id "Ledus.C7G025400.t1"; gene_id "Ledus.C7G025400"
Ledus.C7	AUGUSTUS	CDS	2061199	2061239	0.64	+	2	transcript_id "Ledus.C7G025400.t1"; gene_id "Ledus.C7G025400"
Ledus.C7	AUGUSTUS	exon	2061199	2061239	.	+	.	transcript_id "Ledus.C7G025400.t1"; gene_id "Ledus.C7G025400"
Ledus.C7	AUGUSTUS	stop_codon	2061240	2061242	.	+	0	transcript_id "Ledus.C7G025400.t1"; gene_id "Ledus.C7G025400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3655.t1 is derived from g1091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10444360	10446889	.	+	.	Ledus.S1G107600
Ledus.S1	AUGUSTUS	transcript	10444360	10446889	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	start_codon	10444360	10444362	.	+	0	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	CDS	10444360	10444428	0.21	+	0	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	exon	10444360	10444428	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	intron	10444429	10444556	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	CDS	10444557	10444567	0.95	+	0	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	exon	10444557	10444567	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	intron	10444568	10444674	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	CDS	10444675	10444747	0.95	+	1	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	exon	10444675	10444747	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	intron	10444748	10444957	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	CDS	10444958	10445116	1	+	0	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	exon	10444958	10445116	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	intron	10445117	10445283	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	CDS	10445284	10445397	1	+	0	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	exon	10445284	10445397	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	intron	10445398	10445481	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	CDS	10445482	10445642	1	+	0	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	exon	10445482	10445642	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	intron	10445643	10445751	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	CDS	10445752	10445851	1	+	1	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	exon	10445752	10445851	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	intron	10445852	10445936	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	CDS	10445937	10446113	1	+	0	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	exon	10445937	10446113	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	intron	10446114	10446216	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	CDS	10446217	10446362	1	+	0	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	exon	10446217	10446362	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	intron	10446363	10446471	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	CDS	10446472	10446618	1	+	1	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	exon	10446472	10446618	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	intron	10446619	10446711	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	CDS	10446712	10446889	1	+	1	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	exon	10446712	10446889	.	+	.	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
Ledus.S1	AUGUSTUS	stop_codon	10446890	10446892	.	+	0	transcript_id "Ledus.S1G107600.t1"; gene_id "Ledus.S1G107600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9431.t1 is derived from g10461.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6705330	6706727	.	+	.	Ledus.S3G090800
Ledus.S3	AUGUSTUS	transcript	6705330	6706727	.	+	.	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	start_codon	6705330	6705332	.	+	0	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	CDS	6705330	6705819	0.45	+	0	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	exon	6705330	6705819	.	+	.	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	intron	6705820	6705911	.	+	.	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	CDS	6705912	6705921	0.51	+	2	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	exon	6705912	6705921	.	+	.	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	intron	6705922	6705987	.	+	.	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	CDS	6705988	6706096	1	+	1	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	exon	6705988	6706096	.	+	.	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	intron	6706097	6706171	.	+	.	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	CDS	6706172	6706486	0.68	+	0	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	exon	6706172	6706486	.	+	.	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	intron	6706487	6706573	.	+	.	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	CDS	6706574	6706646	0.78	+	0	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	exon	6706574	6706646	.	+	.	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	intron	6706647	6706716	.	+	.	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	CDS	6706717	6706727	0.78	+	2	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	exon	6706717	6706727	.	+	.	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
Ledus.S3	AUGUSTUS	stop_codon	6706728	6706730	.	+	0	transcript_id "Ledus.S3G090800.t1"; gene_id "Ledus.S3G090800"
# This transcript jg6470.t2 is derived from g3913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6471.t1 is derived from g3914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31427812	31432857	.	+	.	Ledus.S1G389200
Ledus.S1	AUGUSTUS	transcript	31427812	31432857	.	+	.	transcript_id "Ledus.S1G389200.t1"; gene_id "Ledus.S1G389200"
Ledus.S1	AUGUSTUS	start_codon	31427812	31427814	.	+	0	transcript_id "Ledus.S1G389200.t1"; gene_id "Ledus.S1G389200"
Ledus.S1	AUGUSTUS	CDS	31427812	31432857	1	+	0	transcript_id "Ledus.S1G389200.t1"; gene_id "Ledus.S1G389200"
Ledus.S1	AUGUSTUS	exon	31427812	31432857	.	+	.	transcript_id "Ledus.S1G389200.t1"; gene_id "Ledus.S1G389200"
Ledus.S1	AUGUSTUS	stop_codon	31432858	31432860	.	+	0	transcript_id "Ledus.S1G389200.t1"; gene_id "Ledus.S1G389200"
# This transcript jg6802.t2 is derived from g4246.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6802.t3 is derived from g4246.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6803.t1 is derived from g4247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34322878	34324452	.	-	.	Ledus.S1G422400
Ledus.S1	AUGUSTUS	transcript	34322878	34324452	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	stop_codon	34322875	34322877	.	-	0	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	CDS	34322878	34322931	1	-	0	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	exon	34322878	34322931	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	intron	34322932	34323010	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	CDS	34323011	34323068	1	-	1	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	exon	34323011	34323068	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	intron	34323069	34323182	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	CDS	34323183	34323270	1	-	2	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	exon	34323183	34323270	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	intron	34323271	34323392	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	CDS	34323393	34323438	1	-	0	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	exon	34323393	34323438	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	intron	34323439	34323577	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	CDS	34323578	34323613	1	-	0	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	exon	34323578	34323613	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	intron	34323614	34323748	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	CDS	34323749	34323820	1	-	0	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	exon	34323749	34323820	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	intron	34323821	34323961	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	CDS	34323962	34324074	0.93	-	2	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	exon	34323962	34324074	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	intron	34324075	34324192	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	CDS	34324193	34324330	0.94	-	2	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	exon	34324193	34324330	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	intron	34324331	34324409	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	CDS	34324410	34324452	0.93	-	0	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	exon	34324410	34324452	.	-	.	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
Ledus.S1	AUGUSTUS	start_codon	34324450	34324452	.	-	0	transcript_id "Ledus.S1G422400.t1"; gene_id "Ledus.S1G422400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13017.t1 is derived from g6827.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3124754	3125050	.	-	.	Ledus.S6G007900
Ledus.S6	AUGUSTUS	transcript	3124754	3125050	.	-	.	transcript_id "Ledus.S6G007900.t1"; gene_id "Ledus.S6G007900"
Ledus.S6	AUGUSTUS	stop_codon	3124751	3124753	.	-	0	transcript_id "Ledus.S6G007900.t1"; gene_id "Ledus.S6G007900"
Ledus.S6	AUGUSTUS	CDS	3124754	3125050	0.58	-	0	transcript_id "Ledus.S6G007900.t1"; gene_id "Ledus.S6G007900"
Ledus.S6	AUGUSTUS	exon	3124754	3125050	.	-	.	transcript_id "Ledus.S6G007900.t1"; gene_id "Ledus.S6G007900"
Ledus.S6	AUGUSTUS	start_codon	3125048	3125050	.	-	0	transcript_id "Ledus.S6G007900.t1"; gene_id "Ledus.S6G007900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg633.t1 is derived from g7494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3817525	3817872	.	-	.	Ledus.S2G051500
Ledus.S2	AUGUSTUS	transcript	3817525	3817872	.	-	.	transcript_id "Ledus.S2G051500.t1"; gene_id "Ledus.S2G051500"
Ledus.S2	AUGUSTUS	stop_codon	3817522	3817524	.	-	0	transcript_id "Ledus.S2G051500.t1"; gene_id "Ledus.S2G051500"
Ledus.S2	AUGUSTUS	CDS	3817525	3817872	0.5	-	0	transcript_id "Ledus.S2G051500.t1"; gene_id "Ledus.S2G051500"
Ledus.S2	AUGUSTUS	exon	3817525	3817872	.	-	.	transcript_id "Ledus.S2G051500.t1"; gene_id "Ledus.S2G051500"
Ledus.S2	AUGUSTUS	start_codon	3817870	3817872	.	-	0	transcript_id "Ledus.S2G051500.t1"; gene_id "Ledus.S2G051500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11933.t1 is derived from g5552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7863255	7864754	.	-	.	Ledus.S4G108900
Ledus.S4	AUGUSTUS	transcript	7863255	7864754	.	-	.	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	stop_codon	7863252	7863254	.	-	0	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	CDS	7863255	7863514	1	-	2	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	exon	7863255	7863514	.	-	.	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	intron	7863515	7863605	.	-	.	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	CDS	7863606	7863663	1	-	0	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	exon	7863606	7863663	.	-	.	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	intron	7863664	7863798	.	-	.	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	CDS	7863799	7863869	1	-	2	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	exon	7863799	7863869	.	-	.	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	intron	7863870	7864041	.	-	.	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	CDS	7864042	7864165	1	-	0	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	exon	7864042	7864165	.	-	.	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	intron	7864166	7864338	.	-	.	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	CDS	7864339	7864410	1	-	0	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	exon	7864339	7864410	.	-	.	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	intron	7864411	7864526	.	-	.	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	CDS	7864527	7864754	1	-	0	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	exon	7864527	7864754	.	-	.	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
Ledus.S4	AUGUSTUS	start_codon	7864752	7864754	.	-	0	transcript_id "Ledus.S4G108900.t1"; gene_id "Ledus.S4G108900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1953.t1 is derived from g8816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13703124	13704093	.	-	.	Ledus.S2G183500
Ledus.S2	AUGUSTUS	transcript	13703124	13704093	.	-	.	transcript_id "Ledus.S2G183500.t1"; gene_id "Ledus.S2G183500"
Ledus.S2	AUGUSTUS	stop_codon	13703121	13703123	.	-	0	transcript_id "Ledus.S2G183500.t1"; gene_id "Ledus.S2G183500"
Ledus.S2	AUGUSTUS	CDS	13703124	13703893	1	-	2	transcript_id "Ledus.S2G183500.t1"; gene_id "Ledus.S2G183500"
Ledus.S2	AUGUSTUS	exon	13703124	13703893	.	-	.	transcript_id "Ledus.S2G183500.t1"; gene_id "Ledus.S2G183500"
Ledus.S2	AUGUSTUS	intron	13703894	13704020	.	-	.	transcript_id "Ledus.S2G183500.t1"; gene_id "Ledus.S2G183500"
Ledus.S2	AUGUSTUS	CDS	13704021	13704093	1	-	0	transcript_id "Ledus.S2G183500.t1"; gene_id "Ledus.S2G183500"
Ledus.S2	AUGUSTUS	exon	13704021	13704093	.	-	.	transcript_id "Ledus.S2G183500.t1"; gene_id "Ledus.S2G183500"
Ledus.S2	AUGUSTUS	start_codon	13704091	13704093	.	-	0	transcript_id "Ledus.S2G183500.t1"; gene_id "Ledus.S2G183500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9932.t1 is derived from g10962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11299101	11299529	.	+	.	Ledus.S3G140900
Ledus.S3	AUGUSTUS	transcript	11299101	11299529	.	+	.	transcript_id "Ledus.S3G140900.t1"; gene_id "Ledus.S3G140900"
Ledus.S3	AUGUSTUS	start_codon	11299101	11299103	.	+	0	transcript_id "Ledus.S3G140900.t1"; gene_id "Ledus.S3G140900"
Ledus.S3	AUGUSTUS	CDS	11299101	11299529	0.81	+	0	transcript_id "Ledus.S3G140900.t1"; gene_id "Ledus.S3G140900"
Ledus.S3	AUGUSTUS	exon	11299101	11299529	.	+	.	transcript_id "Ledus.S3G140900.t1"; gene_id "Ledus.S3G140900"
Ledus.S3	AUGUSTUS	stop_codon	11299530	11299532	.	+	0	transcript_id "Ledus.S3G140900.t1"; gene_id "Ledus.S3G140900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7165.t1 is derived from g6696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1923503	1924129	.	-	.	Ledus.C7G022600
Ledus.C7	AUGUSTUS	transcript	1923503	1924129	.	-	.	transcript_id "Ledus.C7G022600.t1"; gene_id "Ledus.C7G022600"
Ledus.C7	AUGUSTUS	stop_codon	1923500	1923502	.	-	0	transcript_id "Ledus.C7G022600.t1"; gene_id "Ledus.C7G022600"
Ledus.C7	AUGUSTUS	CDS	1923503	1923525	0.99	-	2	transcript_id "Ledus.C7G022600.t1"; gene_id "Ledus.C7G022600"
Ledus.C7	AUGUSTUS	exon	1923503	1923525	.	-	.	transcript_id "Ledus.C7G022600.t1"; gene_id "Ledus.C7G022600"
Ledus.C7	AUGUSTUS	intron	1923526	1923816	.	-	.	transcript_id "Ledus.C7G022600.t1"; gene_id "Ledus.C7G022600"
Ledus.C7	AUGUSTUS	CDS	1923817	1924129	0.9	-	0	transcript_id "Ledus.C7G022600.t1"; gene_id "Ledus.C7G022600"
Ledus.C7	AUGUSTUS	exon	1923817	1924129	.	-	.	transcript_id "Ledus.C7G022600.t1"; gene_id "Ledus.C7G022600"
Ledus.C7	AUGUSTUS	start_codon	1924127	1924129	.	-	0	transcript_id "Ledus.C7G022600.t1"; gene_id "Ledus.C7G022600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5878.t1 is derived from g3320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27527306	27527992	.	-	.	Ledus.S1G329900
Ledus.S1	AUGUSTUS	transcript	27527306	27527992	.	-	.	transcript_id "Ledus.S1G329900.t1"; gene_id "Ledus.S1G329900"
Ledus.S1	AUGUSTUS	stop_codon	27527303	27527305	.	-	0	transcript_id "Ledus.S1G329900.t1"; gene_id "Ledus.S1G329900"
Ledus.S1	AUGUSTUS	CDS	27527306	27527388	0.27	-	2	transcript_id "Ledus.S1G329900.t1"; gene_id "Ledus.S1G329900"
Ledus.S1	AUGUSTUS	exon	27527306	27527388	.	-	.	transcript_id "Ledus.S1G329900.t1"; gene_id "Ledus.S1G329900"
Ledus.S1	AUGUSTUS	intron	27527389	27527540	.	-	.	transcript_id "Ledus.S1G329900.t1"; gene_id "Ledus.S1G329900"
Ledus.S1	AUGUSTUS	CDS	27527541	27527711	0.42	-	2	transcript_id "Ledus.S1G329900.t1"; gene_id "Ledus.S1G329900"
Ledus.S1	AUGUSTUS	exon	27527541	27527711	.	-	.	transcript_id "Ledus.S1G329900.t1"; gene_id "Ledus.S1G329900"
Ledus.S1	AUGUSTUS	intron	27527712	27527946	.	-	.	transcript_id "Ledus.S1G329900.t1"; gene_id "Ledus.S1G329900"
Ledus.S1	AUGUSTUS	CDS	27527947	27527992	0.89	-	0	transcript_id "Ledus.S1G329900.t1"; gene_id "Ledus.S1G329900"
Ledus.S1	AUGUSTUS	exon	27527947	27527992	.	-	.	transcript_id "Ledus.S1G329900.t1"; gene_id "Ledus.S1G329900"
Ledus.S1	AUGUSTUS	start_codon	27527990	27527992	.	-	0	transcript_id "Ledus.S1G329900.t1"; gene_id "Ledus.S1G329900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4762.t1 is derived from g2200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19640009	19643083	.	+	.	Ledus.S1G218300
Ledus.S1	AUGUSTUS	transcript	19640009	19643083	.	+	.	transcript_id "Ledus.S1G218300.t1"; gene_id "Ledus.S1G218300"
Ledus.S1	AUGUSTUS	start_codon	19640009	19640011	.	+	0	transcript_id "Ledus.S1G218300.t1"; gene_id "Ledus.S1G218300"
Ledus.S1	AUGUSTUS	CDS	19640009	19643083	0.9	+	0	transcript_id "Ledus.S1G218300.t1"; gene_id "Ledus.S1G218300"
Ledus.S1	AUGUSTUS	exon	19640009	19643083	.	+	.	transcript_id "Ledus.S1G218300.t1"; gene_id "Ledus.S1G218300"
Ledus.S1	AUGUSTUS	stop_codon	19643084	19643086	.	+	0	transcript_id "Ledus.S1G218300.t1"; gene_id "Ledus.S1G218300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11830.t1 is derived from g5449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7119137	7119938	.	+	.	Ledus.S4G098600
Ledus.S4	AUGUSTUS	transcript	7119137	7119938	.	+	.	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	start_codon	7119137	7119139	.	+	0	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	CDS	7119137	7119281	0.91	+	0	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	exon	7119137	7119281	.	+	.	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	intron	7119282	7119394	.	+	.	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	CDS	7119395	7119463	1	+	2	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	exon	7119395	7119463	.	+	.	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	intron	7119464	7119549	.	+	.	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	CDS	7119550	7119656	1	+	2	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	exon	7119550	7119656	.	+	.	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	intron	7119657	7119785	.	+	.	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	CDS	7119786	7119938	1	+	0	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	exon	7119786	7119938	.	+	.	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
Ledus.S4	AUGUSTUS	stop_codon	7119939	7119941	.	+	0	transcript_id "Ledus.S4G098600.t1"; gene_id "Ledus.S4G098600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4992.t1 is derived from g2430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21049617	21051896	.	-	.	Ledus.S1G241300
Ledus.S1	AUGUSTUS	transcript	21049617	21051896	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	stop_codon	21049614	21049616	.	-	0	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	CDS	21049617	21049715	0.98	-	0	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	exon	21049617	21049715	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	intron	21049716	21049817	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	CDS	21049818	21049904	0.99	-	0	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	exon	21049818	21049904	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	intron	21049905	21050002	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	CDS	21050003	21050122	0.89	-	0	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	exon	21050003	21050122	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	intron	21050123	21050193	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	CDS	21050194	21050475	1	-	0	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	exon	21050194	21050475	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	intron	21050476	21050590	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	CDS	21050591	21050671	1	-	0	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	exon	21050591	21050671	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	intron	21050672	21050826	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	CDS	21050827	21051102	1	-	0	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	exon	21050827	21051102	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	intron	21051103	21051545	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	CDS	21051546	21051896	0.73	-	0	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	exon	21051546	21051896	.	-	.	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
Ledus.S1	AUGUSTUS	start_codon	21051894	21051896	.	-	0	transcript_id "Ledus.S1G241300.t1"; gene_id "Ledus.S1G241300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9206.t1 is derived from g10236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5340063	5340710	.	+	.	Ledus.S3G068300
Ledus.S3	AUGUSTUS	transcript	5340063	5340710	.	+	.	transcript_id "Ledus.S3G068300.t1"; gene_id "Ledus.S3G068300"
Ledus.S3	AUGUSTUS	start_codon	5340063	5340065	.	+	0	transcript_id "Ledus.S3G068300.t1"; gene_id "Ledus.S3G068300"
Ledus.S3	AUGUSTUS	CDS	5340063	5340710	0.88	+	0	transcript_id "Ledus.S3G068300.t1"; gene_id "Ledus.S3G068300"
Ledus.S3	AUGUSTUS	exon	5340063	5340710	.	+	.	transcript_id "Ledus.S3G068300.t1"; gene_id "Ledus.S3G068300"
Ledus.S3	AUGUSTUS	stop_codon	5340711	5340713	.	+	0	transcript_id "Ledus.S3G068300.t1"; gene_id "Ledus.S3G068300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7769.t1 is derived from g12440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6421127	6421933	.	+	.	Ledus.S5G054700
Ledus.S5	AUGUSTUS	transcript	6421127	6421933	.	+	.	transcript_id "Ledus.S5G054700.t1"; gene_id "Ledus.S5G054700"
Ledus.S5	AUGUSTUS	start_codon	6421127	6421129	.	+	0	transcript_id "Ledus.S5G054700.t1"; gene_id "Ledus.S5G054700"
Ledus.S5	AUGUSTUS	CDS	6421127	6421933	0.68	+	0	transcript_id "Ledus.S5G054700.t1"; gene_id "Ledus.S5G054700"
Ledus.S5	AUGUSTUS	exon	6421127	6421933	.	+	.	transcript_id "Ledus.S5G054700.t1"; gene_id "Ledus.S5G054700"
Ledus.S5	AUGUSTUS	stop_codon	6421934	6421936	.	+	0	transcript_id "Ledus.S5G054700.t1"; gene_id "Ledus.S5G054700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7696.t1 is derived from g12367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5231727	5236191	.	+	.	Ledus.S5G047400
Ledus.S5	AUGUSTUS	transcript	5231727	5236191	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	start_codon	5231727	5231729	.	+	0	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	CDS	5231727	5231877	0.45	+	0	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	exon	5231727	5231877	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	intron	5231878	5231980	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	CDS	5231981	5232055	0.98	+	2	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	exon	5231981	5232055	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	intron	5232056	5232353	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	CDS	5232354	5232829	0.98	+	2	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	exon	5232354	5232829	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	intron	5232830	5232930	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	CDS	5232931	5233035	0.93	+	0	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	exon	5232931	5233035	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	intron	5233036	5233207	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	CDS	5233208	5233329	1	+	0	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	exon	5233208	5233329	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	intron	5233330	5233464	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	CDS	5233465	5233614	1	+	1	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	exon	5233465	5233614	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	intron	5233615	5233745	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	CDS	5233746	5233899	0.97	+	1	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	exon	5233746	5233899	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	intron	5233900	5234007	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	CDS	5234008	5234090	1	+	0	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	exon	5234008	5234090	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	intron	5234091	5234203	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	CDS	5234204	5234327	0.49	+	1	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	exon	5234204	5234327	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	intron	5234328	5234898	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	CDS	5234899	5234960	0.47	+	0	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	exon	5234899	5234960	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	intron	5234961	5235203	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	CDS	5235204	5235269	1	+	1	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	exon	5235204	5235269	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	intron	5235270	5235527	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	CDS	5235528	5236191	1	+	1	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	exon	5235528	5236191	.	+	.	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
Ledus.S5	AUGUSTUS	stop_codon	5236192	5236194	.	+	0	transcript_id "Ledus.S5G047400.t1"; gene_id "Ledus.S5G047400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6860.t1 is derived from g4304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34769618	34772215	.	-	.	Ledus.S1G428100
Ledus.S1	AUGUSTUS	transcript	34769618	34772215	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	stop_codon	34769615	34769617	.	-	0	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	CDS	34769618	34769785	0.89	-	0	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	exon	34769618	34769785	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	intron	34769786	34769897	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	CDS	34769898	34770056	0.99	-	0	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	exon	34769898	34770056	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	intron	34770057	34770149	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	CDS	34770150	34770249	1	-	1	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	exon	34770150	34770249	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	intron	34770250	34770338	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	CDS	34770339	34770402	1	-	2	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	exon	34770339	34770402	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	intron	34770403	34770553	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	CDS	34770554	34770626	0.99	-	0	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	exon	34770554	34770626	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	intron	34770627	34770738	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	CDS	34770739	34770884	0.99	-	2	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	exon	34770739	34770884	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	intron	34770885	34770990	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	CDS	34770991	34771177	1	-	0	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	exon	34770991	34771177	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	intron	34771178	34771338	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	CDS	34771339	34771498	1	-	1	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	exon	34771339	34771498	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	intron	34771499	34771628	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	CDS	34771629	34771762	0.69	-	0	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	exon	34771629	34771762	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	intron	34771763	34771873	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	CDS	34771874	34772215	0.97	-	0	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	exon	34771874	34772215	.	-	.	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
Ledus.S1	AUGUSTUS	start_codon	34772213	34772215	.	-	0	transcript_id "Ledus.S1G428100.t1"; gene_id "Ledus.S1G428100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7866.t1 is derived from g12537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7533091	7533741	.	-	.	Ledus.S5G064400
Ledus.S5	AUGUSTUS	transcript	7533091	7533741	.	-	.	transcript_id "Ledus.S5G064400.t1"; gene_id "Ledus.S5G064400"
Ledus.S5	AUGUSTUS	stop_codon	7533088	7533090	.	-	0	transcript_id "Ledus.S5G064400.t1"; gene_id "Ledus.S5G064400"
Ledus.S5	AUGUSTUS	CDS	7533091	7533228	1	-	0	transcript_id "Ledus.S5G064400.t1"; gene_id "Ledus.S5G064400"
Ledus.S5	AUGUSTUS	exon	7533091	7533228	.	-	.	transcript_id "Ledus.S5G064400.t1"; gene_id "Ledus.S5G064400"
Ledus.S5	AUGUSTUS	intron	7533229	7533422	.	-	.	transcript_id "Ledus.S5G064400.t1"; gene_id "Ledus.S5G064400"
Ledus.S5	AUGUSTUS	CDS	7533423	7533473	1	-	0	transcript_id "Ledus.S5G064400.t1"; gene_id "Ledus.S5G064400"
Ledus.S5	AUGUSTUS	exon	7533423	7533473	.	-	.	transcript_id "Ledus.S5G064400.t1"; gene_id "Ledus.S5G064400"
Ledus.S5	AUGUSTUS	intron	7533474	7533612	.	-	.	transcript_id "Ledus.S5G064400.t1"; gene_id "Ledus.S5G064400"
Ledus.S5	AUGUSTUS	CDS	7533613	7533741	0.96	-	0	transcript_id "Ledus.S5G064400.t1"; gene_id "Ledus.S5G064400"
Ledus.S5	AUGUSTUS	exon	7533613	7533741	.	-	.	transcript_id "Ledus.S5G064400.t1"; gene_id "Ledus.S5G064400"
Ledus.S5	AUGUSTUS	start_codon	7533739	7533741	.	-	0	transcript_id "Ledus.S5G064400.t1"; gene_id "Ledus.S5G064400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11356.t1 is derived from g4974.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3751861	3754746	.	+	.	Ledus.S4G051200
Ledus.S4	AUGUSTUS	transcript	3751861	3754746	.	+	.	transcript_id "Ledus.S4G051200.t1"; gene_id "Ledus.S4G051200"
Ledus.S4	AUGUSTUS	start_codon	3751861	3751863	.	+	0	transcript_id "Ledus.S4G051200.t1"; gene_id "Ledus.S4G051200"
Ledus.S4	AUGUSTUS	CDS	3751861	3754746	0.88	+	0	transcript_id "Ledus.S4G051200.t1"; gene_id "Ledus.S4G051200"
Ledus.S4	AUGUSTUS	exon	3751861	3754746	.	+	.	transcript_id "Ledus.S4G051200.t1"; gene_id "Ledus.S4G051200"
Ledus.S4	AUGUSTUS	stop_codon	3754747	3754749	.	+	0	transcript_id "Ledus.S4G051200.t1"; gene_id "Ledus.S4G051200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11656.t1 is derived from g5275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5750769	5756685	.	-	.	Ledus.S4G081200
Ledus.S4	AUGUSTUS	transcript	5750769	5756685	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	stop_codon	5750766	5750768	.	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5750769	5750846	0.23	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5750769	5750846	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5750847	5750957	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5750958	5751041	0.61	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5750958	5751041	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5751042	5751132	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5751133	5751240	1	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5751133	5751240	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5751241	5751411	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5751412	5751486	1	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5751412	5751486	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5751487	5751596	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5751597	5751716	1	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5751597	5751716	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5751717	5751940	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5751941	5752114	1	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5751941	5752114	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5752115	5752258	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5752259	5752375	1	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5752259	5752375	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5752376	5752501	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5752502	5752621	1	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5752502	5752621	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5752622	5752728	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5752729	5752800	1	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5752729	5752800	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5752801	5752962	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5752963	5753179	1	-	1	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5752963	5753179	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5753180	5753331	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5753332	5753444	1	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5753332	5753444	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5753445	5753627	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5753628	5753798	0.93	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5753628	5753798	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5753799	5754011	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5754012	5754152	1	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5754012	5754152	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5754153	5754283	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5754284	5754511	0.99	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5754284	5754511	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5754512	5754682	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5754683	5754760	1	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5754683	5754760	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5754761	5754991	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5754992	5755308	1	-	2	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5754992	5755308	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5755309	5755397	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5755398	5755681	1	-	1	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5755398	5755681	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5755682	5755791	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5755792	5755979	0.96	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5755792	5755979	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	intron	5755980	5756139	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	CDS	5756140	5756685	0.97	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	exon	5756140	5756685	.	-	.	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
Ledus.S4	AUGUSTUS	start_codon	5756683	5756685	.	-	0	transcript_id "Ledus.S4G081200.t1"; gene_id "Ledus.S4G081200"
# This transcript jg8522.t2 is derived from g13194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8523.t1 is derived from g13195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12459295	12460421	.	-	.	Ledus.S5G130100
Ledus.S5	AUGUSTUS	transcript	12459295	12460421	.	-	.	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	stop_codon	12459292	12459294	.	-	0	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	CDS	12459295	12459360	0.54	-	0	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	exon	12459295	12459360	.	-	.	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	intron	12459361	12459655	.	-	.	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	CDS	12459656	12459825	0.78	-	2	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	exon	12459656	12459825	.	-	.	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	intron	12459826	12459969	.	-	.	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	CDS	12459970	12460129	0.67	-	0	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	exon	12459970	12460129	.	-	.	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	intron	12460130	12460216	.	-	.	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	CDS	12460217	12460282	0.67	-	0	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	exon	12460217	12460282	.	-	.	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	intron	12460283	12460388	.	-	.	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	CDS	12460389	12460421	0.38	-	0	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	exon	12460389	12460421	.	-	.	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
Ledus.S5	AUGUSTUS	start_codon	12460419	12460421	.	-	0	transcript_id "Ledus.S5G130100.t1"; gene_id "Ledus.S5G130100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2804.t1 is derived from g238.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3855691	3858582	.	+	.	Ledus.S1G022500
Ledus.S1	AUGUSTUS	transcript	3855691	3858190	.	+	.	transcript_id "Ledus.S1G022500.t1"; gene_id "Ledus.S1G022500"
Ledus.S1	AUGUSTUS	start_codon	3855691	3855693	.	+	0	transcript_id "Ledus.S1G022500.t1"; gene_id "Ledus.S1G022500"
Ledus.S1	AUGUSTUS	CDS	3855691	3858070	0.72	+	0	transcript_id "Ledus.S1G022500.t1"; gene_id "Ledus.S1G022500"
Ledus.S1	AUGUSTUS	exon	3855691	3858070	.	+	.	transcript_id "Ledus.S1G022500.t1"; gene_id "Ledus.S1G022500"
Ledus.S1	AUGUSTUS	intron	3858071	3858158	.	+	.	transcript_id "Ledus.S1G022500.t1"; gene_id "Ledus.S1G022500"
Ledus.S1	AUGUSTUS	CDS	3858159	3858190	0.71	+	2	transcript_id "Ledus.S1G022500.t1"; gene_id "Ledus.S1G022500"
Ledus.S1	AUGUSTUS	exon	3858159	3858190	.	+	.	transcript_id "Ledus.S1G022500.t1"; gene_id "Ledus.S1G022500"
Ledus.S1	AUGUSTUS	stop_codon	3858191	3858193	.	+	0	transcript_id "Ledus.S1G022500.t1"; gene_id "Ledus.S1G022500"
Ledus.S1	AUGUSTUS	transcript	3855691	3858582	.	+	.	transcript_id "Ledus.S1G022500.t2"; gene_id "Ledus.S1G022500"
Ledus.S1	AUGUSTUS	start_codon	3855691	3855693	.	+	0	transcript_id "Ledus.S1G022500.t2"; gene_id "Ledus.S1G022500"
Ledus.S1	AUGUSTUS	CDS	3855691	3858582	0.98	+	0	transcript_id "Ledus.S1G022500.t2"; gene_id "Ledus.S1G022500"
Ledus.S1	AUGUSTUS	exon	3855691	3858582	.	+	.	transcript_id "Ledus.S1G022500.t2"; gene_id "Ledus.S1G022500"
Ledus.S1	AUGUSTUS	stop_codon	3858583	3858585	.	+	0	transcript_id "Ledus.S1G022500.t2"; gene_id "Ledus.S1G022500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9422.t1 is derived from g10452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6645000	6646787	.	-	.	Ledus.S3G089900
Ledus.S3	AUGUSTUS	transcript	6645000	6646787	.	-	.	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	stop_codon	6644997	6644999	.	-	0	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	CDS	6645000	6645292	1	-	2	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	exon	6645000	6645292	.	-	.	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	intron	6645293	6645433	.	-	.	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	CDS	6645434	6645815	1	-	0	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	exon	6645434	6645815	.	-	.	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	intron	6645816	6645938	.	-	.	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	CDS	6645939	6646207	1	-	2	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	exon	6645939	6646207	.	-	.	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	intron	6646208	6646297	.	-	.	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	CDS	6646298	6646787	0.96	-	0	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	exon	6646298	6646787	.	-	.	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
Ledus.S3	AUGUSTUS	start_codon	6646785	6646787	.	-	0	transcript_id "Ledus.S3G089900.t1"; gene_id "Ledus.S3G089900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9662.t1 is derived from g10692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8864102	8865775	.	+	.	Ledus.S3G113900
Ledus.S3	AUGUSTUS	transcript	8864102	8865775	.	+	.	transcript_id "Ledus.S3G113900.t1"; gene_id "Ledus.S3G113900"
Ledus.S3	AUGUSTUS	start_codon	8864102	8864104	.	+	0	transcript_id "Ledus.S3G113900.t1"; gene_id "Ledus.S3G113900"
Ledus.S3	AUGUSTUS	CDS	8864102	8864955	0.47	+	0	transcript_id "Ledus.S3G113900.t1"; gene_id "Ledus.S3G113900"
Ledus.S3	AUGUSTUS	exon	8864102	8864955	.	+	.	transcript_id "Ledus.S3G113900.t1"; gene_id "Ledus.S3G113900"
Ledus.S3	AUGUSTUS	intron	8864956	8865075	.	+	.	transcript_id "Ledus.S3G113900.t1"; gene_id "Ledus.S3G113900"
Ledus.S3	AUGUSTUS	CDS	8865076	8865775	1	+	1	transcript_id "Ledus.S3G113900.t1"; gene_id "Ledus.S3G113900"
Ledus.S3	AUGUSTUS	exon	8865076	8865775	.	+	.	transcript_id "Ledus.S3G113900.t1"; gene_id "Ledus.S3G113900"
Ledus.S3	AUGUSTUS	stop_codon	8865776	8865778	.	+	0	transcript_id "Ledus.S3G113900.t1"; gene_id "Ledus.S3G113900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3454.t1 is derived from g889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8431524	8431766	.	+	.	Ledus.S1G087500
Ledus.S1	AUGUSTUS	transcript	8431524	8431766	.	+	.	transcript_id "Ledus.S1G087500.t1"; gene_id "Ledus.S1G087500"
Ledus.S1	AUGUSTUS	start_codon	8431524	8431526	.	+	0	transcript_id "Ledus.S1G087500.t1"; gene_id "Ledus.S1G087500"
Ledus.S1	AUGUSTUS	CDS	8431524	8431766	0.37	+	0	transcript_id "Ledus.S1G087500.t1"; gene_id "Ledus.S1G087500"
Ledus.S1	AUGUSTUS	exon	8431524	8431766	.	+	.	transcript_id "Ledus.S1G087500.t1"; gene_id "Ledus.S1G087500"
Ledus.S1	AUGUSTUS	stop_codon	8431767	8431769	.	+	0	transcript_id "Ledus.S1G087500.t1"; gene_id "Ledus.S1G087500"
# This transcript jg1405.t2 is derived from g8266.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1405.t3 is derived from g8266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1406.t1 is derived from g8267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9911249	9912568	.	+	.	Ledus.S2G128800
Ledus.S2	AUGUSTUS	transcript	9911249	9912568	.	+	.	transcript_id "Ledus.S2G128800.t1"; gene_id "Ledus.S2G128800"
Ledus.S2	AUGUSTUS	start_codon	9911249	9911251	.	+	0	transcript_id "Ledus.S2G128800.t1"; gene_id "Ledus.S2G128800"
Ledus.S2	AUGUSTUS	CDS	9911249	9912568	1	+	0	transcript_id "Ledus.S2G128800.t1"; gene_id "Ledus.S2G128800"
Ledus.S2	AUGUSTUS	exon	9911249	9912568	.	+	.	transcript_id "Ledus.S2G128800.t1"; gene_id "Ledus.S2G128800"
Ledus.S2	AUGUSTUS	stop_codon	9912569	9912571	.	+	0	transcript_id "Ledus.S2G128800.t1"; gene_id "Ledus.S2G128800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5966.t1 is derived from g3409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28065578	28066821	.	-	.	Ledus.S1G338700
Ledus.S1	AUGUSTUS	transcript	28065578	28066821	.	-	.	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	stop_codon	28065575	28065577	.	-	0	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	CDS	28065578	28065600	0.47	-	2	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	exon	28065578	28065600	.	-	.	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	intron	28065601	28066085	.	-	.	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	CDS	28066086	28066195	0.44	-	1	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	exon	28066086	28066195	.	-	.	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	intron	28066196	28066361	.	-	.	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	CDS	28066362	28066484	0.8	-	1	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	exon	28066362	28066484	.	-	.	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	intron	28066485	28066708	.	-	.	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	CDS	28066709	28066821	0.89	-	0	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	exon	28066709	28066821	.	-	.	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	start_codon	28066819	28066821	.	-	0	transcript_id "Ledus.S1G338700.t1"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	transcript	28065578	28066821	.	-	.	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	stop_codon	28065575	28065577	.	-	0	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	CDS	28065578	28065600	0.46	-	2	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	exon	28065578	28065600	.	-	.	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	intron	28065601	28066085	.	-	.	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	CDS	28066086	28066195	0.43	-	1	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	exon	28066086	28066195	.	-	.	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	intron	28066196	28066361	.	-	.	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	CDS	28066362	28066472	0.75	-	1	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	exon	28066362	28066472	.	-	.	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	intron	28066473	28066708	.	-	.	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	CDS	28066709	28066821	0.81	-	0	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	exon	28066709	28066821	.	-	.	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
Ledus.S1	AUGUSTUS	start_codon	28066819	28066821	.	-	0	transcript_id "Ledus.S1G338700.t2"; gene_id "Ledus.S1G338700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9841.t1 is derived from g10871.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10457210	10457869	.	-	.	Ledus.S3G131800
Ledus.S3	AUGUSTUS	transcript	10457210	10457869	.	-	.	transcript_id "Ledus.S3G131800.t1"; gene_id "Ledus.S3G131800"
Ledus.S3	AUGUSTUS	stop_codon	10457207	10457209	.	-	0	transcript_id "Ledus.S3G131800.t1"; gene_id "Ledus.S3G131800"
Ledus.S3	AUGUSTUS	CDS	10457210	10457869	0.56	-	0	transcript_id "Ledus.S3G131800.t1"; gene_id "Ledus.S3G131800"
Ledus.S3	AUGUSTUS	exon	10457210	10457869	.	-	.	transcript_id "Ledus.S3G131800.t1"; gene_id "Ledus.S3G131800"
Ledus.S3	AUGUSTUS	start_codon	10457867	10457869	.	-	0	transcript_id "Ledus.S3G131800.t1"; gene_id "Ledus.S3G131800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5380.t1 is derived from g2819.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23929236	23930736	.	-	.	Ledus.S1G280100
Ledus.S1	AUGUSTUS	transcript	23929236	23930736	.	-	.	transcript_id "Ledus.S1G280100.t1"; gene_id "Ledus.S1G280100"
Ledus.S1	AUGUSTUS	stop_codon	23929233	23929235	.	-	0	transcript_id "Ledus.S1G280100.t1"; gene_id "Ledus.S1G280100"
Ledus.S1	AUGUSTUS	CDS	23929236	23930055	0.9	-	1	transcript_id "Ledus.S1G280100.t1"; gene_id "Ledus.S1G280100"
Ledus.S1	AUGUSTUS	exon	23929236	23930055	.	-	.	transcript_id "Ledus.S1G280100.t1"; gene_id "Ledus.S1G280100"
Ledus.S1	AUGUSTUS	intron	23930056	23930515	.	-	.	transcript_id "Ledus.S1G280100.t1"; gene_id "Ledus.S1G280100"
Ledus.S1	AUGUSTUS	CDS	23930516	23930736	0.22	-	0	transcript_id "Ledus.S1G280100.t1"; gene_id "Ledus.S1G280100"
Ledus.S1	AUGUSTUS	exon	23930516	23930736	.	-	.	transcript_id "Ledus.S1G280100.t1"; gene_id "Ledus.S1G280100"
Ledus.S1	AUGUSTUS	start_codon	23930734	23930736	.	-	0	transcript_id "Ledus.S1G280100.t1"; gene_id "Ledus.S1G280100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6925.t1 is derived from g4369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35489554	35491481	.	+	.	Ledus.S1G434600
Ledus.S1	AUGUSTUS	transcript	35489554	35491481	.	+	.	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	start_codon	35489554	35489556	.	+	0	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	CDS	35489554	35489620	0.76	+	0	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	exon	35489554	35489620	.	+	.	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	intron	35489621	35489704	.	+	.	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	CDS	35489705	35489784	1	+	2	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	exon	35489705	35489784	.	+	.	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	intron	35489785	35489901	.	+	.	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	CDS	35489902	35490361	0.92	+	0	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	exon	35489902	35490361	.	+	.	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	intron	35490362	35490529	.	+	.	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	CDS	35490530	35490701	1	+	2	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	exon	35490530	35490701	.	+	.	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	intron	35490702	35490827	.	+	.	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	CDS	35490828	35491096	1	+	1	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	exon	35490828	35491096	.	+	.	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	intron	35491097	35491191	.	+	.	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	CDS	35491192	35491481	0.94	+	2	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	exon	35491192	35491481	.	+	.	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
Ledus.S1	AUGUSTUS	stop_codon	35491482	35491484	.	+	0	transcript_id "Ledus.S1G434600.t1"; gene_id "Ledus.S1G434600"
# This transcript jg374.t2 is derived from g7235.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg375.t1 is derived from g7236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2011669	2013805	.	-	.	Ledus.S2G025700
Ledus.S2	AUGUSTUS	transcript	2011669	2013805	.	-	.	transcript_id "Ledus.S2G025700.t1"; gene_id "Ledus.S2G025700"
Ledus.S2	AUGUSTUS	stop_codon	2011666	2011668	.	-	0	transcript_id "Ledus.S2G025700.t1"; gene_id "Ledus.S2G025700"
Ledus.S2	AUGUSTUS	CDS	2011669	2012338	0.81	-	1	transcript_id "Ledus.S2G025700.t1"; gene_id "Ledus.S2G025700"
Ledus.S2	AUGUSTUS	exon	2011669	2012338	.	-	.	transcript_id "Ledus.S2G025700.t1"; gene_id "Ledus.S2G025700"
Ledus.S2	AUGUSTUS	intron	2012339	2012537	.	-	.	transcript_id "Ledus.S2G025700.t1"; gene_id "Ledus.S2G025700"
Ledus.S2	AUGUSTUS	CDS	2012538	2013805	1	-	0	transcript_id "Ledus.S2G025700.t1"; gene_id "Ledus.S2G025700"
Ledus.S2	AUGUSTUS	exon	2012538	2013805	.	-	.	transcript_id "Ledus.S2G025700.t1"; gene_id "Ledus.S2G025700"
Ledus.S2	AUGUSTUS	start_codon	2013803	2013805	.	-	0	transcript_id "Ledus.S2G025700.t1"; gene_id "Ledus.S2G025700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1714.t1 is derived from g8575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12083255	12085352	.	-	.	Ledus.S2G159600
Ledus.S2	AUGUSTUS	transcript	12083255	12085352	.	-	.	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	stop_codon	12083252	12083254	.	-	0	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	CDS	12083255	12083335	1	-	0	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	exon	12083255	12083335	.	-	.	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	intron	12083336	12083432	.	-	.	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	CDS	12083433	12083573	0.99	-	0	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	exon	12083433	12083573	.	-	.	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	intron	12083574	12083687	.	-	.	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	CDS	12083688	12083904	0.99	-	1	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	exon	12083688	12083904	.	-	.	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	intron	12083905	12084009	.	-	.	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	CDS	12084010	12084179	1	-	0	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	exon	12084010	12084179	.	-	.	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	intron	12084180	12084298	.	-	.	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	CDS	12084299	12084544	1	-	0	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	exon	12084299	12084544	.	-	.	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	intron	12084545	12084872	.	-	.	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	CDS	12084873	12085352	1	-	0	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	exon	12084873	12085352	.	-	.	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
Ledus.S2	AUGUSTUS	start_codon	12085350	12085352	.	-	0	transcript_id "Ledus.S2G159600.t1"; gene_id "Ledus.S2G159600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6060.t1 is derived from g3503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28787485	28790949	.	+	.	Ledus.S1G348100
Ledus.S1	AUGUSTUS	transcript	28787485	28790949	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	start_codon	28787485	28787487	.	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28787485	28787662	0.9	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28787485	28787662	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28787663	28787853	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28787854	28787915	1	+	2	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28787854	28787915	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28787916	28788056	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28788057	28788125	1	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28788057	28788125	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28788126	28788264	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28788265	28788435	1	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28788265	28788435	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28788436	28788565	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28788566	28788657	1	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28788566	28788657	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28788658	28788773	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28788774	28788831	1	+	1	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28788774	28788831	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28788832	28788919	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28788920	28788993	1	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28788920	28788993	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28788994	28789073	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28789074	28789242	1	+	1	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28789074	28789242	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28789243	28789339	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28789340	28789459	1	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28789340	28789459	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28789460	28789546	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28789547	28789648	1	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28789547	28789648	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28789649	28789771	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28789772	28789921	1	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28789772	28789921	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28789922	28790071	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28790072	28790152	1	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28790072	28790152	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28790153	28790243	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28790244	28790381	1	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28790244	28790381	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28790382	28790535	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28790536	28790612	0.71	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28790536	28790612	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28790613	28790723	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28790724	28790784	0.97	+	1	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28790724	28790784	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	intron	28790785	28790874	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	CDS	28790875	28790949	1	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	exon	28790875	28790949	.	+	.	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
Ledus.S1	AUGUSTUS	stop_codon	28790950	28790952	.	+	0	transcript_id "Ledus.S1G348100.t1"; gene_id "Ledus.S1G348100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12606.t1 is derived from g6228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13208510	13209877	.	-	.	Ledus.S4G176200
Ledus.S4	AUGUSTUS	transcript	13208510	13209877	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	stop_codon	13208507	13208509	.	-	0	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	CDS	13208510	13208590	1	-	0	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	exon	13208510	13208590	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	intron	13208591	13208670	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	CDS	13208671	13208721	1	-	0	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	exon	13208671	13208721	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	intron	13208722	13208809	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	CDS	13208810	13208962	0.99	-	0	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	exon	13208810	13208962	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	intron	13208963	13209066	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	CDS	13209067	13209178	1	-	1	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	exon	13209067	13209178	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	intron	13209179	13209267	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	CDS	13209268	13209386	1	-	0	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	exon	13209268	13209386	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	intron	13209387	13209473	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	CDS	13209474	13209733	1	-	2	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	exon	13209474	13209733	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	intron	13209734	13209813	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	CDS	13209814	13209877	1	-	0	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	exon	13209814	13209877	.	-	.	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
Ledus.S4	AUGUSTUS	start_codon	13209875	13209877	.	-	0	transcript_id "Ledus.S4G176200.t1"; gene_id "Ledus.S4G176200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10677.t1 is derived from g11707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17050508	17051647	.	-	.	Ledus.S3G215400
Ledus.S3	AUGUSTUS	transcript	17050508	17051647	.	-	.	transcript_id "Ledus.S3G215400.t1"; gene_id "Ledus.S3G215400"
Ledus.S3	AUGUSTUS	stop_codon	17050505	17050507	.	-	0	transcript_id "Ledus.S3G215400.t1"; gene_id "Ledus.S3G215400"
Ledus.S3	AUGUSTUS	CDS	17050508	17051194	0.99	-	0	transcript_id "Ledus.S3G215400.t1"; gene_id "Ledus.S3G215400"
Ledus.S3	AUGUSTUS	exon	17050508	17051194	.	-	.	transcript_id "Ledus.S3G215400.t1"; gene_id "Ledus.S3G215400"
Ledus.S3	AUGUSTUS	intron	17051195	17051329	.	-	.	transcript_id "Ledus.S3G215400.t1"; gene_id "Ledus.S3G215400"
Ledus.S3	AUGUSTUS	CDS	17051330	17051647	0.38	-	0	transcript_id "Ledus.S3G215400.t1"; gene_id "Ledus.S3G215400"
Ledus.S3	AUGUSTUS	exon	17051330	17051647	.	-	.	transcript_id "Ledus.S3G215400.t1"; gene_id "Ledus.S3G215400"
Ledus.S3	AUGUSTUS	start_codon	17051645	17051647	.	-	0	transcript_id "Ledus.S3G215400.t1"; gene_id "Ledus.S3G215400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3942.t1 is derived from g1378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13662078	13664707	.	-	.	Ledus.S1G136300
Ledus.S1	AUGUSTUS	transcript	13662078	13664707	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	stop_codon	13662075	13662077	.	-	0	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	CDS	13662078	13662206	0.93	-	0	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	exon	13662078	13662206	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	intron	13662207	13662308	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	CDS	13662309	13662443	0.81	-	0	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	exon	13662309	13662443	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	intron	13662444	13662545	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	CDS	13662546	13662594	0.97	-	1	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	exon	13662546	13662594	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	intron	13662595	13662715	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	CDS	13662716	13662775	1	-	1	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	exon	13662716	13662775	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	intron	13662776	13662910	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	CDS	13662911	13662996	1	-	0	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	exon	13662911	13662996	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	intron	13662997	13663078	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	CDS	13663079	13663159	1	-	0	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	exon	13663079	13663159	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	intron	13663160	13663309	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	CDS	13663310	13663412	1	-	1	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	exon	13663310	13663412	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	intron	13663413	13663520	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	CDS	13663521	13663628	1	-	1	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	exon	13663521	13663628	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	intron	13663629	13663724	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	CDS	13663725	13663845	1	-	2	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	exon	13663725	13663845	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	intron	13663846	13664140	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	CDS	13664141	13664250	0.89	-	1	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	exon	13664141	13664250	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	intron	13664251	13664330	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	CDS	13664331	13664359	0.89	-	0	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	exon	13664331	13664359	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	intron	13664360	13664581	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	CDS	13664582	13664707	0.89	-	0	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	exon	13664582	13664707	.	-	.	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
Ledus.S1	AUGUSTUS	start_codon	13664705	13664707	.	-	0	transcript_id "Ledus.S1G136300.t1"; gene_id "Ledus.S1G136300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4675.t1 is derived from g2113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18931896	18932825	.	+	.	Ledus.S1G209600
Ledus.S1	AUGUSTUS	transcript	18931896	18932825	.	+	.	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	start_codon	18931896	18931898	.	+	0	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	CDS	18931896	18932092	0.94	+	0	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	exon	18931896	18932092	.	+	.	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	intron	18932093	18932183	.	+	.	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	CDS	18932184	18932438	1	+	1	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	exon	18932184	18932438	.	+	.	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	intron	18932439	18932533	.	+	.	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	CDS	18932534	18932599	1	+	1	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	exon	18932534	18932599	.	+	.	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	intron	18932600	18932698	.	+	.	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	CDS	18932699	18932825	1	+	1	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	exon	18932699	18932825	.	+	.	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
Ledus.S1	AUGUSTUS	stop_codon	18932826	18932828	.	+	0	transcript_id "Ledus.S1G209600.t1"; gene_id "Ledus.S1G209600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2780.t1 is derived from g214.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3688065	3689112	.	-	.	Ledus.S1G020100
Ledus.S1	AUGUSTUS	transcript	3688065	3689112	.	-	.	transcript_id "Ledus.S1G020100.t1"; gene_id "Ledus.S1G020100"
Ledus.S1	AUGUSTUS	stop_codon	3688062	3688064	.	-	0	transcript_id "Ledus.S1G020100.t1"; gene_id "Ledus.S1G020100"
Ledus.S1	AUGUSTUS	CDS	3688065	3688386	0.48	-	1	transcript_id "Ledus.S1G020100.t1"; gene_id "Ledus.S1G020100"
Ledus.S1	AUGUSTUS	exon	3688065	3688386	.	-	.	transcript_id "Ledus.S1G020100.t1"; gene_id "Ledus.S1G020100"
Ledus.S1	AUGUSTUS	intron	3688387	3688705	.	-	.	transcript_id "Ledus.S1G020100.t1"; gene_id "Ledus.S1G020100"
Ledus.S1	AUGUSTUS	CDS	3688706	3689112	0.23	-	0	transcript_id "Ledus.S1G020100.t1"; gene_id "Ledus.S1G020100"
Ledus.S1	AUGUSTUS	exon	3688706	3689112	.	-	.	transcript_id "Ledus.S1G020100.t1"; gene_id "Ledus.S1G020100"
Ledus.S1	AUGUSTUS	start_codon	3689110	3689112	.	-	0	transcript_id "Ledus.S1G020100.t1"; gene_id "Ledus.S1G020100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7765.t1 is derived from g12436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6271531	6271853	.	-	.	Ledus.S5G054300
Ledus.S5	AUGUSTUS	transcript	6271531	6271853	.	-	.	transcript_id "Ledus.S5G054300.t1"; gene_id "Ledus.S5G054300"
Ledus.S5	AUGUSTUS	stop_codon	6271528	6271530	.	-	0	transcript_id "Ledus.S5G054300.t1"; gene_id "Ledus.S5G054300"
Ledus.S5	AUGUSTUS	CDS	6271531	6271534	0.54	-	1	transcript_id "Ledus.S5G054300.t1"; gene_id "Ledus.S5G054300"
Ledus.S5	AUGUSTUS	exon	6271531	6271534	.	-	.	transcript_id "Ledus.S5G054300.t1"; gene_id "Ledus.S5G054300"
Ledus.S5	AUGUSTUS	intron	6271535	6271641	.	-	.	transcript_id "Ledus.S5G054300.t1"; gene_id "Ledus.S5G054300"
Ledus.S5	AUGUSTUS	CDS	6271642	6271853	0.56	-	0	transcript_id "Ledus.S5G054300.t1"; gene_id "Ledus.S5G054300"
Ledus.S5	AUGUSTUS	exon	6271642	6271853	.	-	.	transcript_id "Ledus.S5G054300.t1"; gene_id "Ledus.S5G054300"
Ledus.S5	AUGUSTUS	start_codon	6271851	6271853	.	-	0	transcript_id "Ledus.S5G054300.t1"; gene_id "Ledus.S5G054300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2827.t1 is derived from g261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3986799	3989510	.	+	.	Ledus.S1G024800
Ledus.S1	AUGUSTUS	transcript	3986799	3989510	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	start_codon	3986799	3986801	.	+	0	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	CDS	3986799	3986968	0.71	+	0	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	exon	3986799	3986968	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	intron	3986969	3987045	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	CDS	3987046	3987133	0.92	+	1	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	exon	3987046	3987133	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	intron	3987134	3987246	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	CDS	3987247	3987346	1	+	0	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	exon	3987247	3987346	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	intron	3987347	3987477	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	CDS	3987478	3987551	1	+	2	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	exon	3987478	3987551	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	intron	3987552	3987647	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	CDS	3987648	3987719	1	+	0	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	exon	3987648	3987719	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	intron	3987720	3987813	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	CDS	3987814	3987891	1	+	0	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	exon	3987814	3987891	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	intron	3987892	3988092	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	CDS	3988093	3988214	1	+	0	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	exon	3988093	3988214	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	intron	3988215	3988293	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	CDS	3988294	3988366	1	+	1	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	exon	3988294	3988366	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	intron	3988367	3988487	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	CDS	3988488	3988549	0.99	+	0	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	exon	3988488	3988549	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	intron	3988550	3988634	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	CDS	3988635	3988976	0.81	+	1	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	exon	3988635	3988976	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	intron	3988977	3989102	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	CDS	3989103	3989205	0.83	+	1	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	exon	3989103	3989205	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	intron	3989206	3989315	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	CDS	3989316	3989510	0.94	+	0	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	exon	3989316	3989510	.	+	.	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
Ledus.S1	AUGUSTUS	stop_codon	3989511	3989513	.	+	0	transcript_id "Ledus.S1G024800.t1"; gene_id "Ledus.S1G024800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12605.t1 is derived from g6227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13204194	13204412	.	-	.	Ledus.S4G176100
Ledus.S4	AUGUSTUS	transcript	13204194	13204412	.	-	.	transcript_id "Ledus.S4G176100.t1"; gene_id "Ledus.S4G176100"
Ledus.S4	AUGUSTUS	stop_codon	13204191	13204193	.	-	0	transcript_id "Ledus.S4G176100.t1"; gene_id "Ledus.S4G176100"
Ledus.S4	AUGUSTUS	CDS	13204194	13204412	0.43	-	0	transcript_id "Ledus.S4G176100.t1"; gene_id "Ledus.S4G176100"
Ledus.S4	AUGUSTUS	exon	13204194	13204412	.	-	.	transcript_id "Ledus.S4G176100.t1"; gene_id "Ledus.S4G176100"
Ledus.S4	AUGUSTUS	start_codon	13204410	13204412	.	-	0	transcript_id "Ledus.S4G176100.t1"; gene_id "Ledus.S4G176100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2450.t1 is derived from g9313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18169088	18169426	.	-	.	Ledus.S2G233200
Ledus.S2	AUGUSTUS	transcript	18169088	18169426	.	-	.	transcript_id "Ledus.S2G233200.t1"; gene_id "Ledus.S2G233200"
Ledus.S2	AUGUSTUS	stop_codon	18169085	18169087	.	-	0	transcript_id "Ledus.S2G233200.t1"; gene_id "Ledus.S2G233200"
Ledus.S2	AUGUSTUS	CDS	18169088	18169426	0.78	-	0	transcript_id "Ledus.S2G233200.t1"; gene_id "Ledus.S2G233200"
Ledus.S2	AUGUSTUS	exon	18169088	18169426	.	-	.	transcript_id "Ledus.S2G233200.t1"; gene_id "Ledus.S2G233200"
Ledus.S2	AUGUSTUS	start_codon	18169424	18169426	.	-	0	transcript_id "Ledus.S2G233200.t1"; gene_id "Ledus.S2G233200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4986.t1 is derived from g2424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20996931	21000128	.	+	.	Ledus.S1G240700
Ledus.S1	AUGUSTUS	transcript	20996931	21000128	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	start_codon	20996931	20996933	.	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20996931	20996955	1	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20996931	20996955	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20996956	20997287	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20997288	20997533	1	+	2	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20997288	20997533	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20997534	20997629	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20997630	20997805	1	+	2	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20997630	20997805	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20997806	20997899	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20997900	20997992	1	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20997900	20997992	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20997993	20998085	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20998086	20998145	1	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20998086	20998145	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20998146	20998281	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20998282	20998554	1	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20998282	20998554	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20998555	20998647	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20998648	20998722	1	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20998648	20998722	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20998723	20998817	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20998818	20998874	1	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20998818	20998874	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20998875	20999022	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20999023	20999163	1	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20999023	20999163	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20999164	20999310	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20999311	20999361	0.99	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20999311	20999361	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20999362	20999465	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20999466	20999561	1	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20999466	20999561	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20999562	20999645	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20999646	20999729	1	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20999646	20999729	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20999730	20999832	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	20999833	20999935	1	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	20999833	20999935	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	intron	20999936	21000048	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	CDS	21000049	21000128	0.91	+	2	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	exon	21000049	21000128	.	+	.	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
Ledus.S1	AUGUSTUS	stop_codon	21000129	21000131	.	+	0	transcript_id "Ledus.S1G240700.t1"; gene_id "Ledus.S1G240700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9027.t1 is derived from g10057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3929712	3931094	.	-	.	Ledus.S3G050400
Ledus.S3	AUGUSTUS	transcript	3929712	3931094	.	-	.	transcript_id "Ledus.S3G050400.t1"; gene_id "Ledus.S3G050400"
Ledus.S3	AUGUSTUS	stop_codon	3929709	3929711	.	-	0	transcript_id "Ledus.S3G050400.t1"; gene_id "Ledus.S3G050400"
Ledus.S3	AUGUSTUS	CDS	3929712	3931094	0.94	-	0	transcript_id "Ledus.S3G050400.t1"; gene_id "Ledus.S3G050400"
Ledus.S3	AUGUSTUS	exon	3929712	3931094	.	-	.	transcript_id "Ledus.S3G050400.t1"; gene_id "Ledus.S3G050400"
Ledus.S3	AUGUSTUS	start_codon	3931092	3931094	.	-	0	transcript_id "Ledus.S3G050400.t1"; gene_id "Ledus.S3G050400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg536.t1 is derived from g7397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3096891	3097124	.	-	.	Ledus.S2G041800
Ledus.S2	AUGUSTUS	transcript	3096891	3097124	.	-	.	transcript_id "Ledus.S2G041800.t1"; gene_id "Ledus.S2G041800"
Ledus.S2	AUGUSTUS	stop_codon	3096888	3096890	.	-	0	transcript_id "Ledus.S2G041800.t1"; gene_id "Ledus.S2G041800"
Ledus.S2	AUGUSTUS	CDS	3096891	3097124	0.65	-	0	transcript_id "Ledus.S2G041800.t1"; gene_id "Ledus.S2G041800"
Ledus.S2	AUGUSTUS	exon	3096891	3097124	.	-	.	transcript_id "Ledus.S2G041800.t1"; gene_id "Ledus.S2G041800"
Ledus.S2	AUGUSTUS	start_codon	3097122	3097124	.	-	0	transcript_id "Ledus.S2G041800.t1"; gene_id "Ledus.S2G041800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6767.t1 is derived from g4210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34017592	34019277	.	-	.	Ledus.S1G418800
Ledus.S1	AUGUSTUS	transcript	34017592	34019277	.	-	.	transcript_id "Ledus.S1G418800.t1"; gene_id "Ledus.S1G418800"
Ledus.S1	AUGUSTUS	stop_codon	34017589	34017591	.	-	0	transcript_id "Ledus.S1G418800.t1"; gene_id "Ledus.S1G418800"
Ledus.S1	AUGUSTUS	CDS	34017592	34019277	0.81	-	0	transcript_id "Ledus.S1G418800.t1"; gene_id "Ledus.S1G418800"
Ledus.S1	AUGUSTUS	exon	34017592	34019277	.	-	.	transcript_id "Ledus.S1G418800.t1"; gene_id "Ledus.S1G418800"
Ledus.S1	AUGUSTUS	start_codon	34019275	34019277	.	-	0	transcript_id "Ledus.S1G418800.t1"; gene_id "Ledus.S1G418800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8031.t1 is derived from g12702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8592620	8593477	.	+	.	Ledus.S5G080900
Ledus.S5	AUGUSTUS	transcript	8592620	8593477	.	+	.	transcript_id "Ledus.S5G080900.t1"; gene_id "Ledus.S5G080900"
Ledus.S5	AUGUSTUS	start_codon	8592620	8592622	.	+	0	transcript_id "Ledus.S5G080900.t1"; gene_id "Ledus.S5G080900"
Ledus.S5	AUGUSTUS	CDS	8592620	8592800	0.64	+	0	transcript_id "Ledus.S5G080900.t1"; gene_id "Ledus.S5G080900"
Ledus.S5	AUGUSTUS	exon	8592620	8592800	.	+	.	transcript_id "Ledus.S5G080900.t1"; gene_id "Ledus.S5G080900"
Ledus.S5	AUGUSTUS	intron	8592801	8592956	.	+	.	transcript_id "Ledus.S5G080900.t1"; gene_id "Ledus.S5G080900"
Ledus.S5	AUGUSTUS	CDS	8592957	8593076	1	+	2	transcript_id "Ledus.S5G080900.t1"; gene_id "Ledus.S5G080900"
Ledus.S5	AUGUSTUS	exon	8592957	8593076	.	+	.	transcript_id "Ledus.S5G080900.t1"; gene_id "Ledus.S5G080900"
Ledus.S5	AUGUSTUS	intron	8593077	8593271	.	+	.	transcript_id "Ledus.S5G080900.t1"; gene_id "Ledus.S5G080900"
Ledus.S5	AUGUSTUS	CDS	8593272	8593477	0.93	+	2	transcript_id "Ledus.S5G080900.t1"; gene_id "Ledus.S5G080900"
Ledus.S5	AUGUSTUS	exon	8593272	8593477	.	+	.	transcript_id "Ledus.S5G080900.t1"; gene_id "Ledus.S5G080900"
Ledus.S5	AUGUSTUS	stop_codon	8593478	8593480	.	+	0	transcript_id "Ledus.S5G080900.t1"; gene_id "Ledus.S5G080900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6947.t1 is derived from g6478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	126007	127555	.	+	.	Ledus.C7G000800
Ledus.C7	AUGUSTUS	transcript	126007	127555	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	start_codon	126007	126009	.	+	0	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	CDS	126007	126046	0.53	+	0	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	exon	126007	126046	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	intron	126047	126131	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	CDS	126132	126185	0.59	+	2	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	exon	126132	126185	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	intron	126186	126272	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	CDS	126273	126394	1	+	2	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	exon	126273	126394	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	intron	126395	126482	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	CDS	126483	126763	1	+	0	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	exon	126483	126763	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	intron	126764	126840	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	CDS	126841	127006	1	+	1	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	exon	126841	127006	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	intron	127007	127116	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	CDS	127117	127409	1	+	0	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	exon	127117	127409	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	intron	127410	127482	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	CDS	127483	127555	1	+	1	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	exon	127483	127555	.	+	.	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
Ledus.C7	AUGUSTUS	stop_codon	127556	127558	.	+	0	transcript_id "Ledus.C7G000800.t1"; gene_id "Ledus.C7G000800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5777.t1 is derived from g3219.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26704118	26705471	.	+	.	Ledus.S1G319800
Ledus.S1	AUGUSTUS	transcript	26704118	26705471	.	+	.	transcript_id "Ledus.S1G319800.t1"; gene_id "Ledus.S1G319800"
Ledus.S1	AUGUSTUS	start_codon	26704118	26704120	.	+	0	transcript_id "Ledus.S1G319800.t1"; gene_id "Ledus.S1G319800"
Ledus.S1	AUGUSTUS	CDS	26704118	26704909	0.97	+	0	transcript_id "Ledus.S1G319800.t1"; gene_id "Ledus.S1G319800"
Ledus.S1	AUGUSTUS	exon	26704118	26704909	.	+	.	transcript_id "Ledus.S1G319800.t1"; gene_id "Ledus.S1G319800"
Ledus.S1	AUGUSTUS	intron	26704910	26704985	.	+	.	transcript_id "Ledus.S1G319800.t1"; gene_id "Ledus.S1G319800"
Ledus.S1	AUGUSTUS	CDS	26704986	26705471	1	+	0	transcript_id "Ledus.S1G319800.t1"; gene_id "Ledus.S1G319800"
Ledus.S1	AUGUSTUS	exon	26704986	26705471	.	+	.	transcript_id "Ledus.S1G319800.t1"; gene_id "Ledus.S1G319800"
Ledus.S1	AUGUSTUS	stop_codon	26705472	26705474	.	+	0	transcript_id "Ledus.S1G319800.t1"; gene_id "Ledus.S1G319800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg2985.t1 is derived from g420.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5160597	5163541	.	-	.	Ledus.S1G040600
Ledus.S1	AUGUSTUS	transcript	5160597	5163541	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	stop_codon	5160594	5160596	.	-	0	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5160597	5160665	1	-	0	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5160597	5160665	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5160666	5160754	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5160755	5160961	1	-	0	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5160755	5160961	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5160962	5161039	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5161040	5161166	1	-	1	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5161040	5161166	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5161167	5161251	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5161252	5161406	0.96	-	0	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5161252	5161406	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5161407	5161524	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5161525	5161697	0.96	-	2	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5161525	5161697	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5161698	5161869	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5161870	5161945	1	-	0	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5161870	5161945	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5161946	5162045	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5162046	5162120	1	-	0	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5162046	5162120	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5162121	5162276	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5162277	5162381	1	-	0	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5162277	5162381	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5162382	5162503	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5162504	5162653	1	-	0	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5162504	5162653	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5162654	5162782	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5162783	5163108	0.98	-	2	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5162783	5163108	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5163109	5163243	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5163244	5163541	0.38	-	0	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5163244	5163541	.	-	.	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	start_codon	5163539	5163541	.	-	0	transcript_id "Ledus.S1G040600.t1"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	transcript	5160597	5163541	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	stop_codon	5160594	5160596	.	-	0	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5160597	5160665	1	-	0	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5160597	5160665	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5160666	5160754	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5160755	5160961	1	-	0	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5160755	5160961	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5160962	5161039	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5161040	5161169	1	-	1	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5161040	5161169	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5161170	5161251	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5161252	5161406	0.97	-	0	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5161252	5161406	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5161407	5161524	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5161525	5161697	0.99	-	2	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5161525	5161697	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5161698	5161869	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5161870	5161945	1	-	0	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5161870	5161945	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5161946	5162045	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5162046	5162120	1	-	0	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5162046	5162120	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5162121	5162276	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5162277	5162381	1	-	0	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5162277	5162381	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5162382	5162503	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5162504	5162653	1	-	0	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5162504	5162653	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5162654	5162782	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5162783	5163108	1	-	2	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5162783	5163108	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5163109	5163243	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5163244	5163541	0.27	-	0	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5163244	5163541	.	-	.	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	start_codon	5163539	5163541	.	-	0	transcript_id "Ledus.S1G040600.t2"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	transcript	5160597	5163541	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	stop_codon	5160594	5160596	.	-	0	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5160597	5160665	1	-	0	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5160597	5160665	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5160666	5160754	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5160755	5160961	1	-	0	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5160755	5160961	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5160962	5161039	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5161040	5161166	1	-	1	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5161040	5161166	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5161167	5161251	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5161252	5161406	0.91	-	0	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5161252	5161406	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5161407	5161524	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5161525	5161697	0.91	-	2	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5161525	5161697	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5161698	5161869	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5161870	5161945	1	-	0	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5161870	5161945	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5161946	5162045	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5162046	5162113	0.99	-	2	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5162046	5162113	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5162114	5162276	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5162277	5162381	0.92	-	2	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5162277	5162381	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5162382	5162559	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5162560	5162653	0.94	-	0	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5162560	5162653	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5162654	5162782	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5162783	5163108	0.98	-	2	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5162783	5163108	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	intron	5163109	5163243	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	CDS	5163244	5163541	0.3	-	0	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	exon	5163244	5163541	.	-	.	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
Ledus.S1	AUGUSTUS	start_codon	5163539	5163541	.	-	0	transcript_id "Ledus.S1G040600.t3"; gene_id "Ledus.S1G040600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg238.t1 is derived from g7099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1050034	1054106	.	+	.	Ledus.S2G012000
Ledus.S2	AUGUSTUS	transcript	1050034	1054106	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	start_codon	1050034	1050036	.	+	0	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	CDS	1050034	1050167	0.45	+	0	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	exon	1050034	1050167	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	intron	1050168	1050363	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	CDS	1050364	1050452	0.62	+	1	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	exon	1050364	1050452	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	intron	1050453	1050553	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	CDS	1050554	1050650	0.65	+	2	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	exon	1050554	1050650	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	intron	1050651	1050732	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	CDS	1050733	1050824	0.44	+	1	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	exon	1050733	1050824	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	intron	1050825	1051133	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	CDS	1051134	1051372	0.61	+	2	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	exon	1051134	1051372	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	intron	1051373	1051603	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	CDS	1051604	1052711	0.32	+	0	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	exon	1051604	1052711	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	intron	1052712	1052834	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	CDS	1052835	1053026	0.96	+	2	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	exon	1052835	1053026	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	intron	1053027	1053160	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	CDS	1053161	1053345	0.91	+	2	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	exon	1053161	1053345	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	intron	1053346	1053458	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	CDS	1053459	1054106	1	+	0	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	exon	1053459	1054106	.	+	.	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
Ledus.S2	AUGUSTUS	stop_codon	1054107	1054109	.	+	0	transcript_id "Ledus.S2G012000.t1"; gene_id "Ledus.S2G012000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg974.t1 is derived from g7835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6401817	6405330	.	-	.	Ledus.S2G085600
Ledus.S2	AUGUSTUS	transcript	6401817	6405330	.	-	.	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	stop_codon	6401814	6401816	.	-	0	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	CDS	6401817	6402256	0.98	-	2	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	exon	6401817	6402256	.	-	.	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	intron	6402257	6402359	.	-	.	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	CDS	6402360	6402383	1	-	2	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	exon	6402360	6402383	.	-	.	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	intron	6402384	6402512	.	-	.	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	CDS	6402513	6402772	0.34	-	1	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	exon	6402513	6402772	.	-	.	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	intron	6402773	6403230	.	-	.	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	CDS	6403231	6405123	0.38	-	1	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	exon	6403231	6405123	.	-	.	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	intron	6405124	6405274	.	-	.	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	CDS	6405275	6405330	1	-	0	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	exon	6405275	6405330	.	-	.	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
Ledus.S2	AUGUSTUS	start_codon	6405328	6405330	.	-	0	transcript_id "Ledus.S2G085600.t1"; gene_id "Ledus.S2G085600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7145.t1 is derived from g6676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1754361	1755545	.	+	.	Ledus.C7G020600
Ledus.C7	AUGUSTUS	transcript	1754361	1755545	.	+	.	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	start_codon	1754361	1754363	.	+	0	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	CDS	1754361	1754537	0.31	+	0	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	exon	1754361	1754537	.	+	.	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	intron	1754538	1754612	.	+	.	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	CDS	1754613	1754876	0.84	+	0	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	exon	1754613	1754876	.	+	.	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	intron	1754877	1754948	.	+	.	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	CDS	1754949	1755083	0.82	+	0	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	exon	1754949	1755083	.	+	.	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	intron	1755084	1755185	.	+	.	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	CDS	1755186	1755344	0.58	+	0	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	exon	1755186	1755344	.	+	.	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	intron	1755345	1755431	.	+	.	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	CDS	1755432	1755545	0.84	+	0	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	exon	1755432	1755545	.	+	.	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
Ledus.C7	AUGUSTUS	stop_codon	1755546	1755548	.	+	0	transcript_id "Ledus.C7G020600.t1"; gene_id "Ledus.C7G020600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8426.t1 is derived from g13098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11571602	11573110	.	-	.	Ledus.S5G120400
Ledus.S5	AUGUSTUS	transcript	11571602	11573110	.	-	.	transcript_id "Ledus.S5G120400.t1"; gene_id "Ledus.S5G120400"
Ledus.S5	AUGUSTUS	stop_codon	11571599	11571601	.	-	0	transcript_id "Ledus.S5G120400.t1"; gene_id "Ledus.S5G120400"
Ledus.S5	AUGUSTUS	CDS	11571602	11571771	0.36	-	2	transcript_id "Ledus.S5G120400.t1"; gene_id "Ledus.S5G120400"
Ledus.S5	AUGUSTUS	exon	11571602	11571771	.	-	.	transcript_id "Ledus.S5G120400.t1"; gene_id "Ledus.S5G120400"
Ledus.S5	AUGUSTUS	intron	11571772	11571877	.	-	.	transcript_id "Ledus.S5G120400.t1"; gene_id "Ledus.S5G120400"
Ledus.S5	AUGUSTUS	CDS	11571878	11572390	0.55	-	2	transcript_id "Ledus.S5G120400.t1"; gene_id "Ledus.S5G120400"
Ledus.S5	AUGUSTUS	exon	11571878	11572390	.	-	.	transcript_id "Ledus.S5G120400.t1"; gene_id "Ledus.S5G120400"
Ledus.S5	AUGUSTUS	intron	11572391	11572485	.	-	.	transcript_id "Ledus.S5G120400.t1"; gene_id "Ledus.S5G120400"
Ledus.S5	AUGUSTUS	CDS	11572486	11573110	1	-	0	transcript_id "Ledus.S5G120400.t1"; gene_id "Ledus.S5G120400"
Ledus.S5	AUGUSTUS	exon	11572486	11573110	.	-	.	transcript_id "Ledus.S5G120400.t1"; gene_id "Ledus.S5G120400"
Ledus.S5	AUGUSTUS	start_codon	11573108	11573110	.	-	0	transcript_id "Ledus.S5G120400.t1"; gene_id "Ledus.S5G120400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6987.t1 is derived from g6518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	571609	571842	.	+	.	Ledus.C7G004800
Ledus.C7	AUGUSTUS	transcript	571609	571842	.	+	.	transcript_id "Ledus.C7G004800.t1"; gene_id "Ledus.C7G004800"
Ledus.C7	AUGUSTUS	start_codon	571609	571611	.	+	0	transcript_id "Ledus.C7G004800.t1"; gene_id "Ledus.C7G004800"
Ledus.C7	AUGUSTUS	CDS	571609	571842	0.94	+	0	transcript_id "Ledus.C7G004800.t1"; gene_id "Ledus.C7G004800"
Ledus.C7	AUGUSTUS	exon	571609	571842	.	+	.	transcript_id "Ledus.C7G004800.t1"; gene_id "Ledus.C7G004800"
Ledus.C7	AUGUSTUS	stop_codon	571843	571845	.	+	0	transcript_id "Ledus.C7G004800.t1"; gene_id "Ledus.C7G004800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg125.t1 is derived from g6986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	71176	75677	.	+	.	Ledus.S2G000700
Ledus.S2	AUGUSTUS	transcript	71176	75677	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	start_codon	71176	71178	.	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	71176	71301	0.88	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	71176	71301	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	71302	71391	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	71392	71538	1	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	71392	71538	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	71539	71689	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	71690	71873	1	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	71690	71873	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	71874	71984	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	71985	72178	1	+	2	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	71985	72178	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	72179	72284	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	72285	72527	0.85	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	72285	72527	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	72528	72656	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	72657	72779	1	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	72657	72779	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	72780	72910	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	72911	73069	1	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	72911	73069	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	73070	73419	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	73420	73592	1	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	73420	73592	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	73593	73732	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	73733	73845	0.99	+	1	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	73733	73845	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	73846	73928	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	73929	73981	0.99	+	2	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	73929	73981	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	73982	74249	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	74250	74334	1	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	74250	74334	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	74335	74569	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	74570	74679	1	+	2	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	74570	74679	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	74680	74871	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	74872	75096	1	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	74872	75096	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	75097	75200	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	75201	75266	0.87	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	75201	75266	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	75267	75373	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	75374	75468	1	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	75374	75468	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	intron	75469	75601	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	CDS	75602	75677	0.91	+	1	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	exon	75602	75677	.	+	.	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
Ledus.S2	AUGUSTUS	stop_codon	75678	75680	.	+	0	transcript_id "Ledus.S2G000700.t1"; gene_id "Ledus.S2G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2325.t1 is derived from g9188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17185408	17188188	.	-	.	Ledus.S2G220700
Ledus.S2	AUGUSTUS	transcript	17185408	17188188	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	stop_codon	17185405	17185407	.	-	0	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	CDS	17185408	17185465	1	-	1	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	exon	17185408	17185465	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	intron	17185466	17185637	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	CDS	17185638	17185733	1	-	1	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	exon	17185638	17185733	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	intron	17185734	17185864	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	CDS	17185865	17185927	0.94	-	1	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	exon	17185865	17185927	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	intron	17185928	17186034	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	CDS	17186035	17186123	0.94	-	0	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	exon	17186035	17186123	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	intron	17186124	17186235	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	CDS	17186236	17186274	0.82	-	0	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	exon	17186236	17186274	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	intron	17186275	17186378	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	CDS	17186379	17186462	0.99	-	0	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	exon	17186379	17186462	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	intron	17186463	17186607	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	CDS	17186608	17186655	1	-	0	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	exon	17186608	17186655	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	intron	17186656	17186800	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	CDS	17186801	17186872	1	-	0	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	exon	17186801	17186872	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	intron	17186873	17187058	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	CDS	17187059	17187153	1	-	2	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	exon	17187059	17187153	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	intron	17187154	17187406	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	CDS	17187407	17187495	1	-	1	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	exon	17187407	17187495	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	intron	17187496	17187586	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	CDS	17187587	17188188	1	-	0	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	exon	17187587	17188188	.	-	.	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
Ledus.S2	AUGUSTUS	start_codon	17188186	17188188	.	-	0	transcript_id "Ledus.S2G220700.t1"; gene_id "Ledus.S2G220700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5851.t1 is derived from g3293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27319095	27320147	.	+	.	Ledus.S1G327200
Ledus.S1	AUGUSTUS	transcript	27319095	27320147	.	+	.	transcript_id "Ledus.S1G327200.t1"; gene_id "Ledus.S1G327200"
Ledus.S1	AUGUSTUS	start_codon	27319095	27319097	.	+	0	transcript_id "Ledus.S1G327200.t1"; gene_id "Ledus.S1G327200"
Ledus.S1	AUGUSTUS	CDS	27319095	27319173	0.48	+	0	transcript_id "Ledus.S1G327200.t1"; gene_id "Ledus.S1G327200"
Ledus.S1	AUGUSTUS	exon	27319095	27319173	.	+	.	transcript_id "Ledus.S1G327200.t1"; gene_id "Ledus.S1G327200"
Ledus.S1	AUGUSTUS	intron	27319174	27319353	.	+	.	transcript_id "Ledus.S1G327200.t1"; gene_id "Ledus.S1G327200"
Ledus.S1	AUGUSTUS	CDS	27319354	27319759	0.54	+	2	transcript_id "Ledus.S1G327200.t1"; gene_id "Ledus.S1G327200"
Ledus.S1	AUGUSTUS	exon	27319354	27319759	.	+	.	transcript_id "Ledus.S1G327200.t1"; gene_id "Ledus.S1G327200"
Ledus.S1	AUGUSTUS	intron	27319760	27320083	.	+	.	transcript_id "Ledus.S1G327200.t1"; gene_id "Ledus.S1G327200"
Ledus.S1	AUGUSTUS	CDS	27320084	27320147	0.66	+	1	transcript_id "Ledus.S1G327200.t1"; gene_id "Ledus.S1G327200"
Ledus.S1	AUGUSTUS	exon	27320084	27320147	.	+	.	transcript_id "Ledus.S1G327200.t1"; gene_id "Ledus.S1G327200"
Ledus.S1	AUGUSTUS	stop_codon	27320148	27320150	.	+	0	transcript_id "Ledus.S1G327200.t1"; gene_id "Ledus.S1G327200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12700.t1 is derived from g6322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13963960	13966180	.	+	.	Ledus.S4G185600
Ledus.S4	AUGUSTUS	transcript	13963960	13966180	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	start_codon	13963960	13963962	.	+	0	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	CDS	13963960	13964250	0.82	+	0	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	exon	13963960	13964250	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	intron	13964251	13964324	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	CDS	13964325	13964378	1	+	0	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	exon	13964325	13964378	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	intron	13964379	13964467	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	CDS	13964468	13964542	1	+	0	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	exon	13964468	13964542	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	intron	13964543	13964644	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	CDS	13964645	13964767	1	+	0	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	exon	13964645	13964767	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	intron	13964768	13964853	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	CDS	13964854	13965045	1	+	0	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	exon	13964854	13965045	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	intron	13965046	13965115	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	CDS	13965116	13965199	1	+	0	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	exon	13965116	13965199	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	intron	13965200	13965296	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	CDS	13965297	13965389	1	+	0	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	exon	13965297	13965389	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	intron	13965390	13965602	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	CDS	13965603	13965656	1	+	0	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	exon	13965603	13965656	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	intron	13965657	13965742	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	CDS	13965743	13965825	1	+	0	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	exon	13965743	13965825	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	intron	13965826	13965907	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	CDS	13965908	13966015	1	+	1	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	exon	13965908	13966015	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	intron	13966016	13966101	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	CDS	13966102	13966180	0.75	+	1	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	exon	13966102	13966180	.	+	.	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
Ledus.S4	AUGUSTUS	stop_codon	13966181	13966183	.	+	0	transcript_id "Ledus.S4G185600.t1"; gene_id "Ledus.S4G185600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3240.t1 is derived from g675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7065018	7067852	.	-	.	Ledus.S1G066100
Ledus.S1	AUGUSTUS	transcript	7065018	7067852	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	stop_codon	7065015	7065017	.	-	0	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7065018	7065063	0.66	-	1	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7065018	7065063	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7065064	7065177	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7065178	7065276	0.6	-	1	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7065178	7065276	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7065277	7065397	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7065398	7065517	1	-	1	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7065398	7065517	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7065518	7065664	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7065665	7065750	1	-	0	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7065665	7065750	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7065751	7065952	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7065953	7066049	1	-	1	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7065953	7066049	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7066050	7066182	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7066183	7066270	1	-	2	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7066183	7066270	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7066271	7066415	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7066416	7066512	1	-	0	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7066416	7066512	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7066513	7066607	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7066608	7066703	0.96	-	0	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7066608	7066703	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7066704	7066812	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7066813	7066912	1	-	1	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7066813	7066912	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7066913	7067064	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7067065	7067183	1	-	0	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7067065	7067183	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7067184	7067317	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7067318	7067375	1	-	1	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7067318	7067375	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7067376	7067569	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7067570	7067698	1	-	1	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7067570	7067698	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7067699	7067811	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7067812	7067852	0.92	-	0	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7067812	7067852	.	-	.	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	start_codon	7067850	7067852	.	-	0	transcript_id "Ledus.S1G066100.t1"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	transcript	7065018	7067852	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	stop_codon	7065015	7065017	.	-	0	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7065018	7065063	0.7	-	1	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7065018	7065063	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7065064	7065177	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7065178	7065276	0.61	-	1	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7065178	7065276	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7065277	7065397	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7065398	7065517	1	-	1	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7065398	7065517	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7065518	7065596	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7065597	7065670	0.53	-	0	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7065597	7065670	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7065671	7065726	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7065727	7065750	0.57	-	0	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7065727	7065750	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7065751	7065952	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7065953	7066049	1	-	1	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7065953	7066049	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7066050	7066182	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7066183	7066270	1	-	2	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7066183	7066270	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7066271	7066415	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7066416	7066512	1	-	0	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7066416	7066512	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7066513	7066607	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7066608	7066703	0.95	-	0	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7066608	7066703	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7066704	7066812	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7066813	7066912	1	-	1	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7066813	7066912	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7066913	7067064	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7067065	7067183	1	-	0	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7067065	7067183	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7067184	7067317	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7067318	7067375	1	-	1	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7067318	7067375	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7067376	7067569	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7067570	7067698	1	-	1	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7067570	7067698	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	intron	7067699	7067811	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	CDS	7067812	7067852	0.98	-	0	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	exon	7067812	7067852	.	-	.	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
Ledus.S1	AUGUSTUS	start_codon	7067850	7067852	.	-	0	transcript_id "Ledus.S1G066100.t2"; gene_id "Ledus.S1G066100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6526.t1 is derived from g3969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32079648	32082365	.	+	.	Ledus.S1G394700
Ledus.S1	AUGUSTUS	transcript	32079648	32082365	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	start_codon	32079648	32079650	.	+	0	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32079648	32079681	0.59	+	0	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32079648	32079681	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32079682	32079779	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32079780	32079993	1	+	2	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32079780	32079993	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32079994	32080067	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32080068	32080139	0.9	+	1	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32080068	32080139	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32080140	32080240	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32080241	32080529	0.96	+	1	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32080241	32080529	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32080530	32080645	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32080646	32080789	1	+	0	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32080646	32080789	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32080790	32080868	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32080869	32080973	1	+	0	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32080869	32080973	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32080974	32081063	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32081064	32081283	1	+	0	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32081064	32081283	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32081284	32081450	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32081451	32081536	1	+	2	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32081451	32081536	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32081537	32081650	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32081651	32081770	0.63	+	0	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32081651	32081770	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32081771	32081875	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32081876	32082007	1	+	0	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32081876	32082007	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32082008	32082095	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32082096	32082365	1	+	0	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32082096	32082365	.	+	.	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	stop_codon	32082366	32082368	.	+	0	transcript_id "Ledus.S1G394700.t1"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	transcript	32079648	32082365	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	start_codon	32079648	32079650	.	+	0	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32079648	32079681	0.51	+	0	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32079648	32079681	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32079682	32079779	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32079780	32079993	1	+	2	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32079780	32079993	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32079994	32080067	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32080068	32080139	0.88	+	1	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32080068	32080139	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32080140	32080240	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32080241	32080529	0.97	+	1	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32080241	32080529	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32080530	32080645	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32080646	32080789	1	+	0	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32080646	32080789	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32080790	32080868	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32080869	32080973	1	+	0	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32080869	32080973	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32080974	32081063	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32081064	32081154	0.33	+	0	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32081064	32081154	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32081155	32081242	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32081243	32081283	0.32	+	2	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32081243	32081283	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32081284	32081650	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32081651	32081770	0.83	+	0	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32081651	32081770	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32081771	32081875	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32081876	32082007	1	+	0	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32081876	32082007	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	intron	32082008	32082095	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	CDS	32082096	32082365	0.99	+	0	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	exon	32082096	32082365	.	+	.	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
Ledus.S1	AUGUSTUS	stop_codon	32082366	32082368	.	+	0	transcript_id "Ledus.S1G394700.t2"; gene_id "Ledus.S1G394700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8645.t1 is derived from g9675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1061109	1062153	.	+	.	Ledus.S3G012200
Ledus.S3	AUGUSTUS	transcript	1061109	1062153	.	+	.	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	start_codon	1061109	1061111	.	+	0	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	CDS	1061109	1061161	0.43	+	0	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	exon	1061109	1061161	.	+	.	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	intron	1061162	1061329	.	+	.	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	CDS	1061330	1061454	0.71	+	1	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	exon	1061330	1061454	.	+	.	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	intron	1061455	1061618	.	+	.	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	CDS	1061619	1061750	0.25	+	2	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	exon	1061619	1061750	.	+	.	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	intron	1061751	1061913	.	+	.	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	CDS	1061914	1061970	0.37	+	2	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	exon	1061914	1061970	.	+	.	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	intron	1061971	1062136	.	+	.	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	CDS	1062137	1062153	0.52	+	2	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	exon	1062137	1062153	.	+	.	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
Ledus.S3	AUGUSTUS	stop_codon	1062154	1062156	.	+	0	transcript_id "Ledus.S3G012200.t1"; gene_id "Ledus.S3G012200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7816.t1 is derived from g12487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7043374	7044445	.	+	.	Ledus.S5G059400
Ledus.S5	AUGUSTUS	transcript	7043374	7044445	.	+	.	transcript_id "Ledus.S5G059400.t1"; gene_id "Ledus.S5G059400"
Ledus.S5	AUGUSTUS	start_codon	7043374	7043376	.	+	0	transcript_id "Ledus.S5G059400.t1"; gene_id "Ledus.S5G059400"
Ledus.S5	AUGUSTUS	CDS	7043374	7044181	0.87	+	0	transcript_id "Ledus.S5G059400.t1"; gene_id "Ledus.S5G059400"
Ledus.S5	AUGUSTUS	exon	7043374	7044181	.	+	.	transcript_id "Ledus.S5G059400.t1"; gene_id "Ledus.S5G059400"
Ledus.S5	AUGUSTUS	intron	7044182	7044362	.	+	.	transcript_id "Ledus.S5G059400.t1"; gene_id "Ledus.S5G059400"
Ledus.S5	AUGUSTUS	CDS	7044363	7044445	0.95	+	2	transcript_id "Ledus.S5G059400.t1"; gene_id "Ledus.S5G059400"
Ledus.S5	AUGUSTUS	exon	7044363	7044445	.	+	.	transcript_id "Ledus.S5G059400.t1"; gene_id "Ledus.S5G059400"
Ledus.S5	AUGUSTUS	stop_codon	7044446	7044448	.	+	0	transcript_id "Ledus.S5G059400.t1"; gene_id "Ledus.S5G059400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2415.t1 is derived from g9278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17994983	17999970	.	+	.	Ledus.S2G229700
Ledus.S2	AUGUSTUS	transcript	17994983	17999970	.	+	.	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	start_codon	17994983	17994985	.	+	0	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	CDS	17994983	17995015	0.03	+	0	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	exon	17994983	17995015	.	+	.	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	intron	17995016	17997616	.	+	.	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	CDS	17997617	17999189	1	+	0	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	exon	17997617	17999189	.	+	.	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	intron	17999190	17999288	.	+	.	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	CDS	17999289	17999697	0.72	+	2	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	exon	17999289	17999697	.	+	.	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	intron	17999698	17999894	.	+	.	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	CDS	17999895	17999970	0.01	+	1	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	exon	17999895	17999970	.	+	.	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
Ledus.S2	AUGUSTUS	stop_codon	17999971	17999973	.	+	0	transcript_id "Ledus.S2G229700.t1"; gene_id "Ledus.S2G229700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg449.t1 is derived from g7310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2660995	2663465	.	-	.	Ledus.S2G033100
Ledus.S2	AUGUSTUS	transcript	2660995	2663465	.	-	.	transcript_id "Ledus.S2G033100.t1"; gene_id "Ledus.S2G033100"
Ledus.S2	AUGUSTUS	stop_codon	2660992	2660994	.	-	0	transcript_id "Ledus.S2G033100.t1"; gene_id "Ledus.S2G033100"
Ledus.S2	AUGUSTUS	CDS	2660995	2662097	0.94	-	2	transcript_id "Ledus.S2G033100.t1"; gene_id "Ledus.S2G033100"
Ledus.S2	AUGUSTUS	exon	2660995	2662097	.	-	.	transcript_id "Ledus.S2G033100.t1"; gene_id "Ledus.S2G033100"
Ledus.S2	AUGUSTUS	intron	2662098	2662178	.	-	.	transcript_id "Ledus.S2G033100.t1"; gene_id "Ledus.S2G033100"
Ledus.S2	AUGUSTUS	CDS	2662179	2662477	1	-	1	transcript_id "Ledus.S2G033100.t1"; gene_id "Ledus.S2G033100"
Ledus.S2	AUGUSTUS	exon	2662179	2662477	.	-	.	transcript_id "Ledus.S2G033100.t1"; gene_id "Ledus.S2G033100"
Ledus.S2	AUGUSTUS	intron	2662478	2662596	.	-	.	transcript_id "Ledus.S2G033100.t1"; gene_id "Ledus.S2G033100"
Ledus.S2	AUGUSTUS	CDS	2662597	2663465	0.99	-	0	transcript_id "Ledus.S2G033100.t1"; gene_id "Ledus.S2G033100"
Ledus.S2	AUGUSTUS	exon	2662597	2663465	.	-	.	transcript_id "Ledus.S2G033100.t1"; gene_id "Ledus.S2G033100"
Ledus.S2	AUGUSTUS	start_codon	2663463	2663465	.	-	0	transcript_id "Ledus.S2G033100.t1"; gene_id "Ledus.S2G033100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12092.t1 is derived from g5711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9472803	9476723	.	+	.	Ledus.S4G124800
Ledus.S4	AUGUSTUS	transcript	9472803	9476723	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	start_codon	9472803	9472805	.	+	0	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9472803	9472859	0.44	+	0	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9472803	9472859	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9472860	9473038	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9473039	9473218	1	+	0	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9473039	9473218	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9473219	9473373	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9473374	9473487	0.45	+	0	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9473374	9473487	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9473488	9473571	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9473572	9473641	1	+	0	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9473572	9473641	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9473642	9473829	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9473830	9474098	1	+	2	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9473830	9474098	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9474099	9474250	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9474251	9474310	1	+	0	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9474251	9474310	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9474311	9474490	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9474491	9474644	1	+	0	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9474491	9474644	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9474645	9474752	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9474753	9474788	0.99	+	2	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9474753	9474788	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9474789	9474882	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9474883	9474942	1	+	2	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9474883	9474942	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9474943	9475147	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9475148	9475419	1	+	2	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9475148	9475419	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9475420	9475657	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9475658	9475729	1	+	0	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9475658	9475729	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9475730	9475831	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9475832	9475912	1	+	0	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9475832	9475912	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9475913	9476068	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9476069	9476254	1	+	0	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9476069	9476254	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9476255	9476394	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9476395	9476446	1	+	0	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9476395	9476446	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9476447	9476528	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9476529	9476615	1	+	2	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9476529	9476615	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	intron	9476616	9476697	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	CDS	9476698	9476723	1	+	2	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	exon	9476698	9476723	.	+	.	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
Ledus.S4	AUGUSTUS	stop_codon	9476724	9476726	.	+	0	transcript_id "Ledus.S4G124800.t1"; gene_id "Ledus.S4G124800"
# This transcript jg10689.t2 is derived from g11719.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10690.t1 is derived from g11720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17111085	17111345	.	-	.	Ledus.S3G216700
Ledus.S3	AUGUSTUS	transcript	17111085	17111345	.	-	.	transcript_id "Ledus.S3G216700.t1"; gene_id "Ledus.S3G216700"
Ledus.S3	AUGUSTUS	stop_codon	17111082	17111084	.	-	0	transcript_id "Ledus.S3G216700.t1"; gene_id "Ledus.S3G216700"
Ledus.S3	AUGUSTUS	CDS	17111085	17111345	0.54	-	0	transcript_id "Ledus.S3G216700.t1"; gene_id "Ledus.S3G216700"
Ledus.S3	AUGUSTUS	exon	17111085	17111345	.	-	.	transcript_id "Ledus.S3G216700.t1"; gene_id "Ledus.S3G216700"
Ledus.S3	AUGUSTUS	start_codon	17111343	17111345	.	-	0	transcript_id "Ledus.S3G216700.t1"; gene_id "Ledus.S3G216700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12287.t1 is derived from g5907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10896921	10897508	.	-	.	Ledus.S4G144300
Ledus.S4	AUGUSTUS	transcript	10896921	10897508	.	-	.	transcript_id "Ledus.S4G144300.t1"; gene_id "Ledus.S4G144300"
Ledus.S4	AUGUSTUS	stop_codon	10896918	10896920	.	-	0	transcript_id "Ledus.S4G144300.t1"; gene_id "Ledus.S4G144300"
Ledus.S4	AUGUSTUS	CDS	10896921	10897508	0.93	-	0	transcript_id "Ledus.S4G144300.t1"; gene_id "Ledus.S4G144300"
Ledus.S4	AUGUSTUS	exon	10896921	10897508	.	-	.	transcript_id "Ledus.S4G144300.t1"; gene_id "Ledus.S4G144300"
Ledus.S4	AUGUSTUS	start_codon	10897506	10897508	.	-	0	transcript_id "Ledus.S4G144300.t1"; gene_id "Ledus.S4G144300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8509.t1 is derived from g13181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12373028	12374443	.	-	.	Ledus.S5G128700
Ledus.S5	AUGUSTUS	transcript	12373028	12374443	.	-	.	transcript_id "Ledus.S5G128700.t1"; gene_id "Ledus.S5G128700"
Ledus.S5	AUGUSTUS	stop_codon	12373025	12373027	.	-	0	transcript_id "Ledus.S5G128700.t1"; gene_id "Ledus.S5G128700"
Ledus.S5	AUGUSTUS	CDS	12373028	12374443	0.95	-	0	transcript_id "Ledus.S5G128700.t1"; gene_id "Ledus.S5G128700"
Ledus.S5	AUGUSTUS	exon	12373028	12374443	.	-	.	transcript_id "Ledus.S5G128700.t1"; gene_id "Ledus.S5G128700"
Ledus.S5	AUGUSTUS	start_codon	12374441	12374443	.	-	0	transcript_id "Ledus.S5G128700.t1"; gene_id "Ledus.S5G128700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5501.t1 is derived from g2940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24643766	24646162	.	-	.	Ledus.S1G292200
Ledus.S1	AUGUSTUS	transcript	24643766	24646012	.	-	.	transcript_id "Ledus.S1G292200.t1"; gene_id "Ledus.S1G292200"
Ledus.S1	AUGUSTUS	stop_codon	24643763	24643765	.	-	0	transcript_id "Ledus.S1G292200.t1"; gene_id "Ledus.S1G292200"
Ledus.S1	AUGUSTUS	CDS	24643766	24646012	0.99	-	0	transcript_id "Ledus.S1G292200.t1"; gene_id "Ledus.S1G292200"
Ledus.S1	AUGUSTUS	exon	24643766	24646012	.	-	.	transcript_id "Ledus.S1G292200.t1"; gene_id "Ledus.S1G292200"
Ledus.S1	AUGUSTUS	start_codon	24646010	24646012	.	-	0	transcript_id "Ledus.S1G292200.t1"; gene_id "Ledus.S1G292200"
Ledus.S1	AUGUSTUS	transcript	24643766	24646162	.	-	.	transcript_id "Ledus.S1G292200.t2"; gene_id "Ledus.S1G292200"
Ledus.S1	AUGUSTUS	stop_codon	24643763	24643765	.	-	0	transcript_id "Ledus.S1G292200.t2"; gene_id "Ledus.S1G292200"
Ledus.S1	AUGUSTUS	CDS	24643766	24646162	0.57	-	0	transcript_id "Ledus.S1G292200.t2"; gene_id "Ledus.S1G292200"
Ledus.S1	AUGUSTUS	exon	24643766	24646162	.	-	.	transcript_id "Ledus.S1G292200.t2"; gene_id "Ledus.S1G292200"
Ledus.S1	AUGUSTUS	start_codon	24646160	24646162	.	-	0	transcript_id "Ledus.S1G292200.t2"; gene_id "Ledus.S1G292200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6717.t1 is derived from g4160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33514310	33516441	.	-	.	Ledus.S1G413800
Ledus.S1	AUGUSTUS	transcript	33514310	33516441	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	stop_codon	33514307	33514309	.	-	0	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	CDS	33514310	33514449	1	-	2	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	exon	33514310	33514449	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	intron	33514450	33514536	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	CDS	33514537	33514591	1	-	0	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	exon	33514537	33514591	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	intron	33514592	33514662	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	CDS	33514663	33514770	1	-	0	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	exon	33514663	33514770	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	intron	33514771	33514879	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	CDS	33514880	33515011	0.83	-	0	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	exon	33514880	33515011	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	intron	33515012	33515109	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	CDS	33515110	33515185	0.96	-	1	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	exon	33515110	33515185	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	intron	33515186	33515304	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	CDS	33515305	33515363	0.93	-	0	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	exon	33515305	33515363	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	intron	33515364	33515473	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	CDS	33515474	33515521	0.93	-	0	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	exon	33515474	33515521	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	intron	33515522	33515606	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	CDS	33515607	33515697	1	-	1	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	exon	33515607	33515697	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	intron	33515698	33515851	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	CDS	33515852	33516441	0.42	-	0	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	exon	33515852	33516441	.	-	.	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
Ledus.S1	AUGUSTUS	start_codon	33516439	33516441	.	-	0	transcript_id "Ledus.S1G413800.t1"; gene_id "Ledus.S1G413800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg523.t1 is derived from g7384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3029341	3031812	.	+	.	Ledus.S2G040500
Ledus.S2	AUGUSTUS	transcript	3029341	3031812	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	start_codon	3029341	3029343	.	+	0	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	CDS	3029341	3029345	1	+	0	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	exon	3029341	3029345	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	intron	3029346	3029549	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	CDS	3029550	3029573	1	+	1	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	exon	3029550	3029573	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	intron	3029574	3029684	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	CDS	3029685	3029790	0.98	+	1	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	exon	3029685	3029790	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	intron	3029791	3029901	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	CDS	3029902	3029970	1	+	0	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	exon	3029902	3029970	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	intron	3029971	3030340	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	CDS	3030341	3030541	1	+	0	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	exon	3030341	3030541	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	intron	3030542	3030695	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	CDS	3030696	3030988	1	+	0	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	exon	3030696	3030988	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	intron	3030989	3031076	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	CDS	3031077	3031338	0.99	+	1	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	exon	3031077	3031338	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	intron	3031339	3031443	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	CDS	3031444	3031652	1	+	0	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	exon	3031444	3031652	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	intron	3031653	3031748	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	CDS	3031749	3031812	1	+	1	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	exon	3031749	3031812	.	+	.	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
Ledus.S2	AUGUSTUS	stop_codon	3031813	3031815	.	+	0	transcript_id "Ledus.S2G040500.t1"; gene_id "Ledus.S2G040500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1312.t1 is derived from g8173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9216206	9216790	.	+	.	Ledus.S2G119400
Ledus.S2	AUGUSTUS	transcript	9216206	9216790	.	+	.	transcript_id "Ledus.S2G119400.t1"; gene_id "Ledus.S2G119400"
Ledus.S2	AUGUSTUS	start_codon	9216206	9216208	.	+	0	transcript_id "Ledus.S2G119400.t1"; gene_id "Ledus.S2G119400"
Ledus.S2	AUGUSTUS	CDS	9216206	9216297	0.73	+	0	transcript_id "Ledus.S2G119400.t1"; gene_id "Ledus.S2G119400"
Ledus.S2	AUGUSTUS	exon	9216206	9216297	.	+	.	transcript_id "Ledus.S2G119400.t1"; gene_id "Ledus.S2G119400"
Ledus.S2	AUGUSTUS	intron	9216298	9216420	.	+	.	transcript_id "Ledus.S2G119400.t1"; gene_id "Ledus.S2G119400"
Ledus.S2	AUGUSTUS	CDS	9216421	9216480	0.97	+	1	transcript_id "Ledus.S2G119400.t1"; gene_id "Ledus.S2G119400"
Ledus.S2	AUGUSTUS	exon	9216421	9216480	.	+	.	transcript_id "Ledus.S2G119400.t1"; gene_id "Ledus.S2G119400"
Ledus.S2	AUGUSTUS	intron	9216481	9216630	.	+	.	transcript_id "Ledus.S2G119400.t1"; gene_id "Ledus.S2G119400"
Ledus.S2	AUGUSTUS	CDS	9216631	9216790	0.91	+	1	transcript_id "Ledus.S2G119400.t1"; gene_id "Ledus.S2G119400"
Ledus.S2	AUGUSTUS	exon	9216631	9216790	.	+	.	transcript_id "Ledus.S2G119400.t1"; gene_id "Ledus.S2G119400"
Ledus.S2	AUGUSTUS	stop_codon	9216791	9216793	.	+	0	transcript_id "Ledus.S2G119400.t1"; gene_id "Ledus.S2G119400"
# This transcript jg11066.t2 is derived from g4684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11067.t1 is derived from g4685.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1594512	1595882	.	+	.	Ledus.S4G022300
Ledus.S4	AUGUSTUS	transcript	1594512	1595882	.	+	.	transcript_id "Ledus.S4G022300.t1"; gene_id "Ledus.S4G022300"
Ledus.S4	AUGUSTUS	start_codon	1594512	1594514	.	+	0	transcript_id "Ledus.S4G022300.t1"; gene_id "Ledus.S4G022300"
Ledus.S4	AUGUSTUS	CDS	1594512	1595042	0.99	+	0	transcript_id "Ledus.S4G022300.t1"; gene_id "Ledus.S4G022300"
Ledus.S4	AUGUSTUS	exon	1594512	1595042	.	+	.	transcript_id "Ledus.S4G022300.t1"; gene_id "Ledus.S4G022300"
Ledus.S4	AUGUSTUS	intron	1595043	1595142	.	+	.	transcript_id "Ledus.S4G022300.t1"; gene_id "Ledus.S4G022300"
Ledus.S4	AUGUSTUS	CDS	1595143	1595430	1	+	0	transcript_id "Ledus.S4G022300.t1"; gene_id "Ledus.S4G022300"
Ledus.S4	AUGUSTUS	exon	1595143	1595430	.	+	.	transcript_id "Ledus.S4G022300.t1"; gene_id "Ledus.S4G022300"
Ledus.S4	AUGUSTUS	intron	1595431	1595519	.	+	.	transcript_id "Ledus.S4G022300.t1"; gene_id "Ledus.S4G022300"
Ledus.S4	AUGUSTUS	CDS	1595520	1595882	1	+	0	transcript_id "Ledus.S4G022300.t1"; gene_id "Ledus.S4G022300"
Ledus.S4	AUGUSTUS	exon	1595520	1595882	.	+	.	transcript_id "Ledus.S4G022300.t1"; gene_id "Ledus.S4G022300"
Ledus.S4	AUGUSTUS	stop_codon	1595883	1595885	.	+	0	transcript_id "Ledus.S4G022300.t1"; gene_id "Ledus.S4G022300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6106.t1 is derived from g3549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28927641	28929819	.	-	.	Ledus.S1G352700
Ledus.S1	AUGUSTUS	transcript	28927641	28929819	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	stop_codon	28927638	28927640	.	-	0	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	CDS	28927641	28927850	0.99	-	0	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	exon	28927641	28927850	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	intron	28927851	28927929	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	CDS	28927930	28928130	0.99	-	0	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	exon	28927930	28928130	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	intron	28928131	28928259	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	CDS	28928260	28928385	1	-	0	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	exon	28928260	28928385	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	intron	28928386	28928662	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	CDS	28928663	28928809	1	-	0	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	exon	28928663	28928809	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	intron	28928810	28928904	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	CDS	28928905	28929093	1	-	0	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	exon	28928905	28929093	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	intron	28929094	28929275	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	CDS	28929276	28929434	0.99	-	0	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	exon	28929276	28929434	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	intron	28929435	28929541	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	CDS	28929542	28929604	1	-	0	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	exon	28929542	28929604	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	intron	28929605	28929738	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	CDS	28929739	28929819	0.99	-	0	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	exon	28929739	28929819	.	-	.	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
Ledus.S1	AUGUSTUS	start_codon	28929817	28929819	.	-	0	transcript_id "Ledus.S1G352700.t1"; gene_id "Ledus.S1G352700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7608.t1 is derived from g12279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4348738	4349025	.	-	.	Ledus.S5G038600
Ledus.S5	AUGUSTUS	transcript	4348738	4349025	.	-	.	transcript_id "Ledus.S5G038600.t1"; gene_id "Ledus.S5G038600"
Ledus.S5	AUGUSTUS	stop_codon	4348735	4348737	.	-	0	transcript_id "Ledus.S5G038600.t1"; gene_id "Ledus.S5G038600"
Ledus.S5	AUGUSTUS	CDS	4348738	4349025	0.5	-	0	transcript_id "Ledus.S5G038600.t1"; gene_id "Ledus.S5G038600"
Ledus.S5	AUGUSTUS	exon	4348738	4349025	.	-	.	transcript_id "Ledus.S5G038600.t1"; gene_id "Ledus.S5G038600"
Ledus.S5	AUGUSTUS	start_codon	4349023	4349025	.	-	0	transcript_id "Ledus.S5G038600.t1"; gene_id "Ledus.S5G038600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11698.t1 is derived from g5317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6054037	6056973	.	-	.	Ledus.S4G085400
Ledus.S4	AUGUSTUS	transcript	6054037	6056973	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	stop_codon	6054034	6054036	.	-	0	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6054037	6054125	1	-	2	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6054037	6054125	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	intron	6054126	6054209	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6054210	6054276	1	-	0	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6054210	6054276	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	intron	6054277	6054366	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6054367	6054462	1	-	0	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6054367	6054462	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	intron	6054463	6054541	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6054542	6054595	1	-	0	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6054542	6054595	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	intron	6054596	6054673	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6054674	6054725	1	-	1	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6054674	6054725	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	intron	6054726	6054880	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6054881	6054948	1	-	0	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6054881	6054948	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	intron	6054949	6055080	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6055081	6055260	0.97	-	0	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6055081	6055260	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	intron	6055261	6055403	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6055404	6055496	1	-	0	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6055404	6055496	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	intron	6055497	6055718	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6055719	6055799	1	-	0	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6055719	6055799	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	intron	6055800	6055916	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6055917	6055997	1	-	0	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6055917	6055997	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	intron	6055998	6056120	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6056121	6056204	1	-	0	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6056121	6056204	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	intron	6056205	6056299	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6056300	6056373	1	-	2	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6056300	6056373	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	intron	6056374	6056834	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	CDS	6056835	6056973	0.92	-	0	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	exon	6056835	6056973	.	-	.	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
Ledus.S4	AUGUSTUS	start_codon	6056971	6056973	.	-	0	transcript_id "Ledus.S4G085400.t1"; gene_id "Ledus.S4G085400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3151.t1 is derived from g586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6352151	6353187	.	-	.	Ledus.S1G057200
Ledus.S1	AUGUSTUS	transcript	6352151	6353187	.	-	.	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	stop_codon	6352148	6352150	.	-	0	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	CDS	6352151	6352241	0.99	-	1	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	exon	6352151	6352241	.	-	.	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	intron	6352242	6352338	.	-	.	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	CDS	6352339	6352428	1	-	1	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	exon	6352339	6352428	.	-	.	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	intron	6352429	6352555	.	-	.	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	CDS	6352556	6352700	1	-	2	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	exon	6352556	6352700	.	-	.	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	intron	6352701	6352784	.	-	.	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	CDS	6352785	6352885	1	-	1	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	exon	6352785	6352885	.	-	.	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	intron	6352886	6353027	.	-	.	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	CDS	6353028	6353068	1	-	0	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	exon	6353028	6353068	.	-	.	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	intron	6353069	6353175	.	-	.	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	CDS	6353176	6353187	0.85	-	0	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	exon	6353176	6353187	.	-	.	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
Ledus.S1	AUGUSTUS	start_codon	6353185	6353187	.	-	0	transcript_id "Ledus.S1G057200.t1"; gene_id "Ledus.S1G057200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3096.t1 is derived from g531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5829620	5830672	.	+	.	Ledus.S1G051700
Ledus.S1	AUGUSTUS	transcript	5829620	5830672	.	+	.	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	start_codon	5829620	5829622	.	+	0	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	CDS	5829620	5829835	1	+	0	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	exon	5829620	5829835	.	+	.	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	intron	5829836	5830014	.	+	.	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	CDS	5830015	5830111	1	+	0	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	exon	5830015	5830111	.	+	.	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	intron	5830112	5830192	.	+	.	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	CDS	5830193	5830284	0.97	+	2	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	exon	5830193	5830284	.	+	.	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	intron	5830285	5830600	.	+	.	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	CDS	5830601	5830672	0.96	+	0	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	exon	5830601	5830672	.	+	.	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
Ledus.S1	AUGUSTUS	stop_codon	5830673	5830675	.	+	0	transcript_id "Ledus.S1G051700.t1"; gene_id "Ledus.S1G051700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9531.t1 is derived from g10561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7607472	7610070	.	-	.	Ledus.S3G100800
Ledus.S3	AUGUSTUS	transcript	7607472	7610070	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	stop_codon	7607469	7607471	.	-	0	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	CDS	7607472	7607871	0.86	-	1	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	exon	7607472	7607871	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	intron	7607872	7607961	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	CDS	7607962	7608293	0.99	-	0	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	exon	7607962	7608293	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	intron	7608294	7608397	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	CDS	7608398	7608500	1	-	1	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	exon	7608398	7608500	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	intron	7608501	7608633	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	CDS	7608634	7608815	1	-	0	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	exon	7608634	7608815	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	intron	7608816	7608913	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	CDS	7608914	7609103	1	-	1	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	exon	7608914	7609103	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	intron	7609104	7609203	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	CDS	7609204	7609292	1	-	0	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	exon	7609204	7609292	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	intron	7609293	7609436	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	CDS	7609437	7609516	0.96	-	2	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	exon	7609437	7609516	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	intron	7609517	7609618	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	CDS	7609619	7609718	0.96	-	0	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	exon	7609619	7609718	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	intron	7609719	7609797	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	CDS	7609798	7610070	0.39	-	0	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	exon	7609798	7610070	.	-	.	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
Ledus.S3	AUGUSTUS	start_codon	7610068	7610070	.	-	0	transcript_id "Ledus.S3G100800.t1"; gene_id "Ledus.S3G100800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg46.t1 is derived from g9459.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	91154	93007	.	-	.	Ledus.C8G000600
Ledus.C8	AUGUSTUS	transcript	91154	93007	.	-	.	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	stop_codon	91151	91153	.	-	0	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	CDS	91154	91988	0.71	-	1	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	exon	91154	91988	.	-	.	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	intron	91989	92127	.	-	.	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	CDS	92128	92351	1	-	0	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	exon	92128	92351	.	-	.	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	intron	92352	92459	.	-	.	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	CDS	92460	92729	0.8	-	0	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	exon	92460	92729	.	-	.	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	intron	92730	92872	.	-	.	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	CDS	92873	93007	0.45	-	0	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	exon	92873	93007	.	-	.	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
Ledus.C8	AUGUSTUS	start_codon	93005	93007	.	-	0	transcript_id "Ledus.C8G000600.t1"; gene_id "Ledus.C8G000600"
# This transcript jg5916.t1 is derived from g3359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27766489	27767125	.	-	.	Ledus.S1G333700
Ledus.S1	AUGUSTUS	transcript	27766489	27767125	.	-	.	transcript_id "Ledus.S1G333700.t1"; gene_id "Ledus.S1G333700"
Ledus.S1	AUGUSTUS	stop_codon	27766486	27766488	.	-	0	transcript_id "Ledus.S1G333700.t1"; gene_id "Ledus.S1G333700"
Ledus.S1	AUGUSTUS	CDS	27766489	27767000	0.51	-	2	transcript_id "Ledus.S1G333700.t1"; gene_id "Ledus.S1G333700"
Ledus.S1	AUGUSTUS	exon	27766489	27767000	.	-	.	transcript_id "Ledus.S1G333700.t1"; gene_id "Ledus.S1G333700"
Ledus.S1	AUGUSTUS	intron	27767001	27767109	.	-	.	transcript_id "Ledus.S1G333700.t1"; gene_id "Ledus.S1G333700"
Ledus.S1	AUGUSTUS	CDS	27767110	27767125	0.45	-	0	transcript_id "Ledus.S1G333700.t1"; gene_id "Ledus.S1G333700"
Ledus.S1	AUGUSTUS	exon	27767110	27767125	.	-	.	transcript_id "Ledus.S1G333700.t1"; gene_id "Ledus.S1G333700"
Ledus.S1	AUGUSTUS	start_codon	27767123	27767125	.	-	0	transcript_id "Ledus.S1G333700.t1"; gene_id "Ledus.S1G333700"
# This transcript jg8723.t2 is derived from g9753.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8724.t1 is derived from g9754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1585370	1593282	.	-	.	Ledus.S3G020100
Ledus.S3	AUGUSTUS	transcript	1585370	1593282	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	stop_codon	1585367	1585369	.	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1585370	1585528	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1585370	1585528	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1585529	1585613	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1585614	1585784	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1585614	1585784	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1585785	1585868	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1585869	1586009	0.9	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1585869	1586009	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1586010	1586100	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1586101	1586175	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1586101	1586175	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1586176	1586273	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1586274	1586513	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1586274	1586513	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1586514	1586612	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1586613	1587038	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1586613	1587038	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1587039	1587209	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1587210	1587311	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1587210	1587311	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1587312	1587511	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1587512	1587566	1	-	1	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1587512	1587566	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1587567	1587657	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1587658	1587899	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1587658	1587899	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1587900	1588053	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1588054	1588173	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1588054	1588173	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1588174	1588358	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1588359	1588442	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1588359	1588442	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1588443	1588573	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1588574	1588627	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1588574	1588627	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1588628	1588718	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1588719	1588784	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1588719	1588784	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1588785	1588875	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1588876	1589062	1	-	1	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1588876	1589062	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1589063	1589218	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1589219	1589637	0.92	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1589219	1589637	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1589638	1589761	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1589762	1589887	0.9	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1589762	1589887	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1589888	1589991	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1589992	1590138	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1589992	1590138	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1590139	1590290	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1590291	1590323	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1590291	1590323	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1590324	1590415	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1590416	1590584	1	-	1	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1590416	1590584	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1590585	1590755	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1590756	1590789	1	-	2	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1590756	1590789	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1590790	1590939	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1590940	1591069	0.99	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1590940	1591069	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1591070	1591179	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1591180	1591257	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1591180	1591257	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1591258	1591388	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1591389	1591538	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1591389	1591538	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1591539	1591777	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1591778	1592043	0.99	-	2	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1591778	1592043	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1592044	1592147	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1592148	1592376	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1592148	1592376	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1592377	1592467	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1592468	1592554	1	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1592468	1592554	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1592555	1592664	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1592665	1593073	1	-	1	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1592665	1593073	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1593074	1593154	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1593155	1593282	0.88	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1593155	1593282	.	-	.	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	start_codon	1593280	1593282	.	-	0	transcript_id "Ledus.S3G020100.t1"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	transcript	1585370	1593282	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	stop_codon	1585367	1585369	.	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1585370	1585528	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1585370	1585528	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1585529	1585613	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1585614	1585784	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1585614	1585784	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1585785	1585868	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1585869	1586009	0.91	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1585869	1586009	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1586010	1586100	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1586101	1586175	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1586101	1586175	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1586176	1586273	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1586274	1586513	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1586274	1586513	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1586514	1586612	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1586613	1587038	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1586613	1587038	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1587039	1587209	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1587210	1587311	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1587210	1587311	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1587312	1587511	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1587512	1587566	1	-	1	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1587512	1587566	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1587567	1587657	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1587658	1587899	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1587658	1587899	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1587900	1588053	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1588054	1588173	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1588054	1588173	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1588174	1588358	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1588359	1588442	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1588359	1588442	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1588443	1588573	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1588574	1588627	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1588574	1588627	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1588628	1588718	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1588719	1588784	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1588719	1588784	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1588785	1588875	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1588876	1589062	1	-	1	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1588876	1589062	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1589063	1589218	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1589219	1589637	0.89	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1589219	1589637	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1589638	1589761	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1589762	1589887	0.87	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1589762	1589887	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1589888	1589991	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1589992	1590138	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1589992	1590138	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1590139	1590290	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1590291	1590323	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1590291	1590323	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1590324	1590415	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1590416	1590544	0.53	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1590416	1590544	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1590545	1590755	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1590756	1590789	0.53	-	1	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1590756	1590789	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1590790	1590939	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1590940	1590993	0.33	-	1	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1590940	1590993	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1590994	1591108	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1591109	1591257	0.35	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1591109	1591257	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1591258	1591388	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1591389	1591538	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1591389	1591538	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1591539	1591777	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1591778	1592043	0.96	-	2	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1591778	1592043	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1592044	1592147	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1592148	1592376	0.99	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1592148	1592376	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1592377	1592467	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1592468	1592554	1	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1592468	1592554	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1592555	1592664	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1592665	1593073	1	-	1	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1592665	1593073	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	intron	1593074	1593154	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	CDS	1593155	1593282	0.88	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	exon	1593155	1593282	.	-	.	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
Ledus.S3	AUGUSTUS	start_codon	1593280	1593282	.	-	0	transcript_id "Ledus.S3G020100.t2"; gene_id "Ledus.S3G020100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3192.t1 is derived from g627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6678460	6678924	.	-	.	Ledus.S1G061300
Ledus.S1	AUGUSTUS	transcript	6678460	6678924	.	-	.	transcript_id "Ledus.S1G061300.t1"; gene_id "Ledus.S1G061300"
Ledus.S1	AUGUSTUS	stop_codon	6678457	6678459	.	-	0	transcript_id "Ledus.S1G061300.t1"; gene_id "Ledus.S1G061300"
Ledus.S1	AUGUSTUS	CDS	6678460	6678924	0.52	-	0	transcript_id "Ledus.S1G061300.t1"; gene_id "Ledus.S1G061300"
Ledus.S1	AUGUSTUS	exon	6678460	6678924	.	-	.	transcript_id "Ledus.S1G061300.t1"; gene_id "Ledus.S1G061300"
Ledus.S1	AUGUSTUS	start_codon	6678922	6678924	.	-	0	transcript_id "Ledus.S1G061300.t1"; gene_id "Ledus.S1G061300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11288.t1 is derived from g4906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3379952	3381425	.	+	.	Ledus.S4G044400
Ledus.S4	AUGUSTUS	transcript	3379952	3381425	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	start_codon	3379952	3379954	.	+	0	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	CDS	3379952	3380026	0.94	+	0	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	exon	3379952	3380026	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	intron	3380027	3380188	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	CDS	3380189	3380259	0.93	+	0	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	exon	3380189	3380259	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	intron	3380260	3380355	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	CDS	3380356	3380375	0.97	+	1	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	exon	3380356	3380375	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	intron	3380376	3380450	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	CDS	3380451	3380538	0.97	+	2	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	exon	3380451	3380538	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	intron	3380539	3380756	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	CDS	3380757	3380805	0.69	+	1	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	exon	3380757	3380805	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	intron	3380806	3380893	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	CDS	3380894	3381100	0.78	+	0	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	exon	3380894	3381100	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	intron	3381101	3381392	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	CDS	3381393	3381425	0.97	+	0	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	exon	3381393	3381425	.	+	.	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
Ledus.S4	AUGUSTUS	stop_codon	3381426	3381428	.	+	0	transcript_id "Ledus.S4G044400.t1"; gene_id "Ledus.S4G044400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6084.t1 is derived from g3527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28848533	28849339	.	+	.	Ledus.S1G350500
Ledus.S1	AUGUSTUS	transcript	28848533	28849339	.	+	.	transcript_id "Ledus.S1G350500.t1"; gene_id "Ledus.S1G350500"
Ledus.S1	AUGUSTUS	start_codon	28848533	28848535	.	+	0	transcript_id "Ledus.S1G350500.t1"; gene_id "Ledus.S1G350500"
Ledus.S1	AUGUSTUS	CDS	28848533	28849339	0.7	+	0	transcript_id "Ledus.S1G350500.t1"; gene_id "Ledus.S1G350500"
Ledus.S1	AUGUSTUS	exon	28848533	28849339	.	+	.	transcript_id "Ledus.S1G350500.t1"; gene_id "Ledus.S1G350500"
Ledus.S1	AUGUSTUS	stop_codon	28849340	28849342	.	+	0	transcript_id "Ledus.S1G350500.t1"; gene_id "Ledus.S1G350500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12914.t1 is derived from g4406.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	303628	304758	.	-	.	Ledus.C9G002200
Ledus.C9	AUGUSTUS	transcript	303628	304758	.	-	.	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	stop_codon	303625	303627	.	-	0	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	CDS	303628	303659	0.52	-	2	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	exon	303628	303659	.	-	.	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	intron	303660	303847	.	-	.	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	CDS	303848	303983	0.89	-	0	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	exon	303848	303983	.	-	.	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	intron	303984	304080	.	-	.	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	CDS	304081	304265	1	-	2	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	exon	304081	304265	.	-	.	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	intron	304266	304394	.	-	.	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	CDS	304395	304758	0.84	-	0	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	exon	304395	304758	.	-	.	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
Ledus.C9	AUGUSTUS	start_codon	304756	304758	.	-	0	transcript_id "Ledus.C9G002200.t1"; gene_id "Ledus.C9G002200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1407.t1 is derived from g8268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9916017	9917021	.	-	.	Ledus.S2G128900
Ledus.S2	AUGUSTUS	transcript	9916017	9917021	.	-	.	transcript_id "Ledus.S2G128900.t1"; gene_id "Ledus.S2G128900"
Ledus.S2	AUGUSTUS	stop_codon	9916014	9916016	.	-	0	transcript_id "Ledus.S2G128900.t1"; gene_id "Ledus.S2G128900"
Ledus.S2	AUGUSTUS	CDS	9916017	9917021	0.97	-	0	transcript_id "Ledus.S2G128900.t1"; gene_id "Ledus.S2G128900"
Ledus.S2	AUGUSTUS	exon	9916017	9917021	.	-	.	transcript_id "Ledus.S2G128900.t1"; gene_id "Ledus.S2G128900"
Ledus.S2	AUGUSTUS	start_codon	9917019	9917021	.	-	0	transcript_id "Ledus.S2G128900.t1"; gene_id "Ledus.S2G128900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2950.t1 is derived from g385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4814182	4814737	.	-	.	Ledus.S1G037100
Ledus.S1	AUGUSTUS	transcript	4814182	4814737	.	-	.	transcript_id "Ledus.S1G037100.t1"; gene_id "Ledus.S1G037100"
Ledus.S1	AUGUSTUS	stop_codon	4814179	4814181	.	-	0	transcript_id "Ledus.S1G037100.t1"; gene_id "Ledus.S1G037100"
Ledus.S1	AUGUSTUS	CDS	4814182	4814502	0.76	-	0	transcript_id "Ledus.S1G037100.t1"; gene_id "Ledus.S1G037100"
Ledus.S1	AUGUSTUS	exon	4814182	4814502	.	-	.	transcript_id "Ledus.S1G037100.t1"; gene_id "Ledus.S1G037100"
Ledus.S1	AUGUSTUS	intron	4814503	4814617	.	-	.	transcript_id "Ledus.S1G037100.t1"; gene_id "Ledus.S1G037100"
Ledus.S1	AUGUSTUS	CDS	4814618	4814737	0.29	-	0	transcript_id "Ledus.S1G037100.t1"; gene_id "Ledus.S1G037100"
Ledus.S1	AUGUSTUS	exon	4814618	4814737	.	-	.	transcript_id "Ledus.S1G037100.t1"; gene_id "Ledus.S1G037100"
Ledus.S1	AUGUSTUS	start_codon	4814735	4814737	.	-	0	transcript_id "Ledus.S1G037100.t1"; gene_id "Ledus.S1G037100"
# This transcript jg4291.t2 is derived from g1727.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4292.t1 is derived from g1728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16082161	16082574	.	-	.	Ledus.S1G171300
Ledus.S1	AUGUSTUS	transcript	16082161	16082574	.	-	.	transcript_id "Ledus.S1G171300.t1"; gene_id "Ledus.S1G171300"
Ledus.S1	AUGUSTUS	stop_codon	16082158	16082160	.	-	0	transcript_id "Ledus.S1G171300.t1"; gene_id "Ledus.S1G171300"
Ledus.S1	AUGUSTUS	CDS	16082161	16082214	0.96	-	0	transcript_id "Ledus.S1G171300.t1"; gene_id "Ledus.S1G171300"
Ledus.S1	AUGUSTUS	exon	16082161	16082214	.	-	.	transcript_id "Ledus.S1G171300.t1"; gene_id "Ledus.S1G171300"
Ledus.S1	AUGUSTUS	intron	16082215	16082421	.	-	.	transcript_id "Ledus.S1G171300.t1"; gene_id "Ledus.S1G171300"
Ledus.S1	AUGUSTUS	CDS	16082422	16082574	1	-	0	transcript_id "Ledus.S1G171300.t1"; gene_id "Ledus.S1G171300"
Ledus.S1	AUGUSTUS	exon	16082422	16082574	.	-	.	transcript_id "Ledus.S1G171300.t1"; gene_id "Ledus.S1G171300"
Ledus.S1	AUGUSTUS	start_codon	16082572	16082574	.	-	0	transcript_id "Ledus.S1G171300.t1"; gene_id "Ledus.S1G171300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg944.t1 is derived from g7805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6248101	6249942	.	+	.	Ledus.S2G082600
Ledus.S2	AUGUSTUS	transcript	6248101	6249942	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	start_codon	6248101	6248103	.	+	0	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	CDS	6248101	6248233	1	+	0	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	exon	6248101	6248233	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	intron	6248234	6248321	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	CDS	6248322	6248552	1	+	2	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	exon	6248322	6248552	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	intron	6248553	6248641	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	CDS	6248642	6248926	1	+	2	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	exon	6248642	6248926	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	intron	6248927	6249007	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	CDS	6249008	6249138	1	+	2	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	exon	6249008	6249138	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	intron	6249139	6249288	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	CDS	6249289	6249510	0.95	+	0	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	exon	6249289	6249510	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	intron	6249511	6249599	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	CDS	6249600	6249680	0.8	+	0	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	exon	6249600	6249680	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	intron	6249681	6249921	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	CDS	6249922	6249942	0.88	+	0	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	exon	6249922	6249942	.	+	.	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
Ledus.S2	AUGUSTUS	stop_codon	6249943	6249945	.	+	0	transcript_id "Ledus.S2G082600.t1"; gene_id "Ledus.S2G082600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3200.t1 is derived from g635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6773118	6775664	.	-	.	Ledus.S1G062100
Ledus.S1	AUGUSTUS	transcript	6773118	6775664	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	stop_codon	6773115	6773117	.	-	0	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	CDS	6773118	6773411	1	-	0	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	exon	6773118	6773411	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	intron	6773412	6773684	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	CDS	6773685	6773747	0.52	-	0	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	exon	6773685	6773747	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	intron	6773748	6773962	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	CDS	6773963	6774079	0.95	-	0	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	exon	6773963	6774079	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	intron	6774080	6774161	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	CDS	6774162	6774267	0.95	-	1	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	exon	6774162	6774267	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	intron	6774268	6774342	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	CDS	6774343	6774511	0.83	-	2	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	exon	6774343	6774511	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	intron	6774512	6774586	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	CDS	6774587	6774836	0.99	-	0	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	exon	6774587	6774836	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	intron	6774837	6775026	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	CDS	6775027	6775406	0.57	-	2	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	exon	6775027	6775406	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	intron	6775407	6775483	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	CDS	6775484	6775664	0.49	-	0	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	exon	6775484	6775664	.	-	.	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
Ledus.S1	AUGUSTUS	start_codon	6775662	6775664	.	-	0	transcript_id "Ledus.S1G062100.t1"; gene_id "Ledus.S1G062100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10622.t1 is derived from g11652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16549862	16554907	.	+	.	Ledus.S3G209900
Ledus.S3	AUGUSTUS	transcript	16549862	16554907	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	start_codon	16549862	16549864	.	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16549862	16549994	0.63	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16549862	16549994	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16549995	16550068	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16550069	16550517	0.91	+	2	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16550069	16550517	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16550518	16550626	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16550627	16550858	1	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16550627	16550858	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16550859	16550967	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16550968	16551137	0.99	+	2	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16550968	16551137	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16551138	16551278	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16551279	16551464	1	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16551279	16551464	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16551465	16551547	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16551548	16551643	1	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16551548	16551643	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16551644	16551727	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16551728	16551925	1	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16551728	16551925	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16551926	16552043	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16552044	16552203	1	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16552044	16552203	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16552204	16552331	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16552332	16552564	1	+	2	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16552332	16552564	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16552565	16552756	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16552757	16552874	1	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16552757	16552874	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16552875	16553002	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16553003	16553079	1	+	2	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16553003	16553079	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16553080	16553199	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16553200	16553289	1	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16553200	16553289	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16553290	16553411	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16553412	16553555	1	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16553412	16553555	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16553556	16553665	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16553666	16553962	1	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16553666	16553962	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16553963	16554081	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16554082	16554162	1	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16554082	16554162	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16554163	16554304	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16554305	16554481	1	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16554305	16554481	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	intron	16554482	16554649	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	CDS	16554650	16554907	0.97	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	exon	16554650	16554907	.	+	.	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
Ledus.S3	AUGUSTUS	stop_codon	16554908	16554910	.	+	0	transcript_id "Ledus.S3G209900.t1"; gene_id "Ledus.S3G209900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1180.t1 is derived from g8041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8271323	8272227	.	-	.	Ledus.S2G106200
Ledus.S2	AUGUSTUS	transcript	8271323	8272227	.	-	.	transcript_id "Ledus.S2G106200.t1"; gene_id "Ledus.S2G106200"
Ledus.S2	AUGUSTUS	stop_codon	8271320	8271322	.	-	0	transcript_id "Ledus.S2G106200.t1"; gene_id "Ledus.S2G106200"
Ledus.S2	AUGUSTUS	CDS	8271323	8271761	0.99	-	1	transcript_id "Ledus.S2G106200.t1"; gene_id "Ledus.S2G106200"
Ledus.S2	AUGUSTUS	exon	8271323	8271761	.	-	.	transcript_id "Ledus.S2G106200.t1"; gene_id "Ledus.S2G106200"
Ledus.S2	AUGUSTUS	intron	8271762	8271844	.	-	.	transcript_id "Ledus.S2G106200.t1"; gene_id "Ledus.S2G106200"
Ledus.S2	AUGUSTUS	CDS	8271845	8272227	1	-	0	transcript_id "Ledus.S2G106200.t1"; gene_id "Ledus.S2G106200"
Ledus.S2	AUGUSTUS	exon	8271845	8272227	.	-	.	transcript_id "Ledus.S2G106200.t1"; gene_id "Ledus.S2G106200"
Ledus.S2	AUGUSTUS	start_codon	8272225	8272227	.	-	0	transcript_id "Ledus.S2G106200.t1"; gene_id "Ledus.S2G106200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11008.t1 is derived from g4626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1081229	1082329	.	-	.	Ledus.S4G016400
Ledus.S4	AUGUSTUS	transcript	1081229	1082329	.	-	.	transcript_id "Ledus.S4G016400.t1"; gene_id "Ledus.S4G016400"
Ledus.S4	AUGUSTUS	stop_codon	1081226	1081228	.	-	0	transcript_id "Ledus.S4G016400.t1"; gene_id "Ledus.S4G016400"
Ledus.S4	AUGUSTUS	CDS	1081229	1082329	1	-	0	transcript_id "Ledus.S4G016400.t1"; gene_id "Ledus.S4G016400"
Ledus.S4	AUGUSTUS	exon	1081229	1082329	.	-	.	transcript_id "Ledus.S4G016400.t1"; gene_id "Ledus.S4G016400"
Ledus.S4	AUGUSTUS	start_codon	1082327	1082329	.	-	0	transcript_id "Ledus.S4G016400.t1"; gene_id "Ledus.S4G016400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12490.t1 is derived from g6111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12353418	12355949	.	+	.	Ledus.S4G164600
Ledus.S4	AUGUSTUS	transcript	12353418	12355949	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	start_codon	12353418	12353420	.	+	0	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	CDS	12353418	12353493	0.99	+	0	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	exon	12353418	12353493	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	intron	12353494	12353607	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	CDS	12353608	12353681	0.99	+	2	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	exon	12353608	12353681	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	intron	12353682	12353801	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	CDS	12353802	12354009	1	+	0	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	exon	12353802	12354009	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	intron	12354010	12354093	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	CDS	12354094	12354374	1	+	2	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	exon	12354094	12354374	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	intron	12354375	12354462	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	CDS	12354463	12355166	0.95	+	0	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	exon	12354463	12355166	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	intron	12355167	12355244	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	CDS	12355245	12355654	0.98	+	1	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	exon	12355245	12355654	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	intron	12355655	12355758	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	CDS	12355759	12355949	1	+	2	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	exon	12355759	12355949	.	+	.	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
Ledus.S4	AUGUSTUS	stop_codon	12355950	12355952	.	+	0	transcript_id "Ledus.S4G164600.t1"; gene_id "Ledus.S4G164600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10845.t1 is derived from g4463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	34837	35793	.	-	.	Ledus.S4G000100
Ledus.S4	AUGUSTUS	transcript	34837	35793	.	-	.	transcript_id "Ledus.S4G000100.t1"; gene_id "Ledus.S4G000100"
Ledus.S4	AUGUSTUS	stop_codon	34834	34836	.	-	0	transcript_id "Ledus.S4G000100.t1"; gene_id "Ledus.S4G000100"
Ledus.S4	AUGUSTUS	CDS	34837	35793	1	-	0	transcript_id "Ledus.S4G000100.t1"; gene_id "Ledus.S4G000100"
Ledus.S4	AUGUSTUS	exon	34837	35793	.	-	.	transcript_id "Ledus.S4G000100.t1"; gene_id "Ledus.S4G000100"
Ledus.S4	AUGUSTUS	start_codon	35791	35793	.	-	0	transcript_id "Ledus.S4G000100.t1"; gene_id "Ledus.S4G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12251.t1 is derived from g5871.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10639082	10641443	.	-	.	Ledus.S4G140700
Ledus.S4	AUGUSTUS	transcript	10639082	10641443	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	stop_codon	10639079	10639081	.	-	0	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	CDS	10639082	10639083	1	-	2	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	exon	10639082	10639083	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	intron	10639084	10639222	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	CDS	10639223	10639391	1	-	0	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	exon	10639223	10639391	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	intron	10639392	10639472	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	CDS	10639473	10639616	1	-	0	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	exon	10639473	10639616	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	intron	10639617	10639702	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	CDS	10639703	10639819	0.86	-	0	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	exon	10639703	10639819	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	intron	10639820	10639921	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	CDS	10639922	10640029	0.86	-	0	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	exon	10639922	10640029	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	intron	10640030	10640117	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	CDS	10640118	10640215	0.79	-	2	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	exon	10640118	10640215	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	intron	10640216	10640322	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	CDS	10640323	10640492	0.84	-	1	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	exon	10640323	10640492	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	intron	10640493	10640577	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	CDS	10640578	10640659	0.7	-	2	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	exon	10640578	10640659	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	intron	10640660	10640772	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	CDS	10640773	10640847	0.6	-	2	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	exon	10640773	10640847	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	intron	10640848	10640957	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	CDS	10640958	10641196	1	-	1	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	exon	10640958	10641196	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	intron	10641197	10641264	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	CDS	10641265	10641443	0.65	-	0	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	exon	10641265	10641443	.	-	.	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
Ledus.S4	AUGUSTUS	start_codon	10641441	10641443	.	-	0	transcript_id "Ledus.S4G140700.t1"; gene_id "Ledus.S4G140700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4956.t1 is derived from g2394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20874954	20875472	.	-	.	Ledus.S1G237700
Ledus.S1	AUGUSTUS	transcript	20874954	20875472	.	-	.	transcript_id "Ledus.S1G237700.t1"; gene_id "Ledus.S1G237700"
Ledus.S1	AUGUSTUS	stop_codon	20874951	20874953	.	-	0	transcript_id "Ledus.S1G237700.t1"; gene_id "Ledus.S1G237700"
Ledus.S1	AUGUSTUS	CDS	20874954	20875472	0.85	-	0	transcript_id "Ledus.S1G237700.t1"; gene_id "Ledus.S1G237700"
Ledus.S1	AUGUSTUS	exon	20874954	20875472	.	-	.	transcript_id "Ledus.S1G237700.t1"; gene_id "Ledus.S1G237700"
Ledus.S1	AUGUSTUS	start_codon	20875470	20875472	.	-	0	transcript_id "Ledus.S1G237700.t1"; gene_id "Ledus.S1G237700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9871.t1 is derived from g10901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10781123	10782229	.	+	.	Ledus.S3G134800
Ledus.S3	AUGUSTUS	transcript	10781123	10782229	.	+	.	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	start_codon	10781123	10781125	.	+	0	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	CDS	10781123	10781150	0.3	+	0	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	exon	10781123	10781150	.	+	.	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	intron	10781151	10781263	.	+	.	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	CDS	10781264	10781373	1	+	2	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	exon	10781264	10781373	.	+	.	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	intron	10781374	10781457	.	+	.	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	CDS	10781458	10781599	1	+	0	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	exon	10781458	10781599	.	+	.	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	intron	10781600	10781673	.	+	.	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	CDS	10781674	10781828	1	+	2	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	exon	10781674	10781828	.	+	.	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	intron	10781829	10781917	.	+	.	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	CDS	10781918	10782229	0.84	+	0	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	exon	10781918	10782229	.	+	.	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
Ledus.S3	AUGUSTUS	stop_codon	10782230	10782232	.	+	0	transcript_id "Ledus.S3G134800.t1"; gene_id "Ledus.S3G134800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9613.t1 is derived from g10643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8413497	8416006	.	-	.	Ledus.S3G109000
Ledus.S3	AUGUSTUS	transcript	8413497	8416006	.	-	.	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	stop_codon	8413494	8413496	.	-	0	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	CDS	8413497	8415153	1	-	1	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	exon	8413497	8415153	.	-	.	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	intron	8415154	8415280	.	-	.	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	CDS	8415281	8415619	0.83	-	1	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	exon	8415281	8415619	.	-	.	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	intron	8415620	8415763	.	-	.	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	CDS	8415764	8415842	0.48	-	2	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	exon	8415764	8415842	.	-	.	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	intron	8415843	8415915	.	-	.	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	CDS	8415916	8416006	0.45	-	0	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	exon	8415916	8416006	.	-	.	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
Ledus.S3	AUGUSTUS	start_codon	8416004	8416006	.	-	0	transcript_id "Ledus.S3G109000.t1"; gene_id "Ledus.S3G109000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5340.t1 is derived from g2779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23468694	23469050	.	-	.	Ledus.S1G276100
Ledus.S1	AUGUSTUS	transcript	23468694	23469050	.	-	.	transcript_id "Ledus.S1G276100.t1"; gene_id "Ledus.S1G276100"
Ledus.S1	AUGUSTUS	stop_codon	23468691	23468693	.	-	0	transcript_id "Ledus.S1G276100.t1"; gene_id "Ledus.S1G276100"
Ledus.S1	AUGUSTUS	CDS	23468694	23469050	0.97	-	0	transcript_id "Ledus.S1G276100.t1"; gene_id "Ledus.S1G276100"
Ledus.S1	AUGUSTUS	exon	23468694	23469050	.	-	.	transcript_id "Ledus.S1G276100.t1"; gene_id "Ledus.S1G276100"
Ledus.S1	AUGUSTUS	start_codon	23469048	23469050	.	-	0	transcript_id "Ledus.S1G276100.t1"; gene_id "Ledus.S1G276100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13084.t1 is derived from g6894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5283574	5284571	.	-	.	Ledus.S6G014600
Ledus.S6	AUGUSTUS	transcript	5283574	5284571	.	-	.	transcript_id "Ledus.S6G014600.t1"; gene_id "Ledus.S6G014600"
Ledus.S6	AUGUSTUS	stop_codon	5283571	5283573	.	-	0	transcript_id "Ledus.S6G014600.t1"; gene_id "Ledus.S6G014600"
Ledus.S6	AUGUSTUS	CDS	5283574	5283578	0.54	-	2	transcript_id "Ledus.S6G014600.t1"; gene_id "Ledus.S6G014600"
Ledus.S6	AUGUSTUS	exon	5283574	5283578	.	-	.	transcript_id "Ledus.S6G014600.t1"; gene_id "Ledus.S6G014600"
Ledus.S6	AUGUSTUS	intron	5283579	5283664	.	-	.	transcript_id "Ledus.S6G014600.t1"; gene_id "Ledus.S6G014600"
Ledus.S6	AUGUSTUS	CDS	5283665	5284571	0.81	-	0	transcript_id "Ledus.S6G014600.t1"; gene_id "Ledus.S6G014600"
Ledus.S6	AUGUSTUS	exon	5283665	5284571	.	-	.	transcript_id "Ledus.S6G014600.t1"; gene_id "Ledus.S6G014600"
Ledus.S6	AUGUSTUS	start_codon	5284569	5284571	.	-	0	transcript_id "Ledus.S6G014600.t1"; gene_id "Ledus.S6G014600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3999.t1 is derived from g1435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13987631	13988137	.	+	.	Ledus.S1G142000
Ledus.S1	AUGUSTUS	transcript	13987631	13988137	.	+	.	transcript_id "Ledus.S1G142000.t1"; gene_id "Ledus.S1G142000"
Ledus.S1	AUGUSTUS	start_codon	13987631	13987633	.	+	0	transcript_id "Ledus.S1G142000.t1"; gene_id "Ledus.S1G142000"
Ledus.S1	AUGUSTUS	CDS	13987631	13988137	0.76	+	0	transcript_id "Ledus.S1G142000.t1"; gene_id "Ledus.S1G142000"
Ledus.S1	AUGUSTUS	exon	13987631	13988137	.	+	.	transcript_id "Ledus.S1G142000.t1"; gene_id "Ledus.S1G142000"
Ledus.S1	AUGUSTUS	stop_codon	13988138	13988140	.	+	0	transcript_id "Ledus.S1G142000.t1"; gene_id "Ledus.S1G142000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8173.t1 is derived from g12844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9671447	9673000	.	+	.	Ledus.S5G095100
Ledus.S5	AUGUSTUS	transcript	9671447	9673000	.	+	.	transcript_id "Ledus.S5G095100.t1"; gene_id "Ledus.S5G095100"
Ledus.S5	AUGUSTUS	start_codon	9671447	9671449	.	+	0	transcript_id "Ledus.S5G095100.t1"; gene_id "Ledus.S5G095100"
Ledus.S5	AUGUSTUS	CDS	9671447	9673000	0.82	+	0	transcript_id "Ledus.S5G095100.t1"; gene_id "Ledus.S5G095100"
Ledus.S5	AUGUSTUS	exon	9671447	9673000	.	+	.	transcript_id "Ledus.S5G095100.t1"; gene_id "Ledus.S5G095100"
Ledus.S5	AUGUSTUS	stop_codon	9673001	9673003	.	+	0	transcript_id "Ledus.S5G095100.t1"; gene_id "Ledus.S5G095100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg297.t1 is derived from g7158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1469309	1470213	.	-	.	Ledus.S2G017900
Ledus.S2	AUGUSTUS	transcript	1469309	1470213	.	-	.	transcript_id "Ledus.S2G017900.t1"; gene_id "Ledus.S2G017900"
Ledus.S2	AUGUSTUS	stop_codon	1469306	1469308	.	-	0	transcript_id "Ledus.S2G017900.t1"; gene_id "Ledus.S2G017900"
Ledus.S2	AUGUSTUS	CDS	1469309	1469647	0.66	-	0	transcript_id "Ledus.S2G017900.t1"; gene_id "Ledus.S2G017900"
Ledus.S2	AUGUSTUS	exon	1469309	1469647	.	-	.	transcript_id "Ledus.S2G017900.t1"; gene_id "Ledus.S2G017900"
Ledus.S2	AUGUSTUS	intron	1469648	1469837	.	-	.	transcript_id "Ledus.S2G017900.t1"; gene_id "Ledus.S2G017900"
Ledus.S2	AUGUSTUS	CDS	1469838	1469942	0.45	-	0	transcript_id "Ledus.S2G017900.t1"; gene_id "Ledus.S2G017900"
Ledus.S2	AUGUSTUS	exon	1469838	1469942	.	-	.	transcript_id "Ledus.S2G017900.t1"; gene_id "Ledus.S2G017900"
Ledus.S2	AUGUSTUS	intron	1469943	1470066	.	-	.	transcript_id "Ledus.S2G017900.t1"; gene_id "Ledus.S2G017900"
Ledus.S2	AUGUSTUS	CDS	1470067	1470213	0.71	-	0	transcript_id "Ledus.S2G017900.t1"; gene_id "Ledus.S2G017900"
Ledus.S2	AUGUSTUS	exon	1470067	1470213	.	-	.	transcript_id "Ledus.S2G017900.t1"; gene_id "Ledus.S2G017900"
Ledus.S2	AUGUSTUS	start_codon	1470211	1470213	.	-	0	transcript_id "Ledus.S2G017900.t1"; gene_id "Ledus.S2G017900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4472.t1 is derived from g1908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17236546	17237895	.	+	.	Ledus.S1G189300
Ledus.S1	AUGUSTUS	transcript	17236546	17237895	.	+	.	transcript_id "Ledus.S1G189300.t1"; gene_id "Ledus.S1G189300"
Ledus.S1	AUGUSTUS	start_codon	17236546	17236548	.	+	0	transcript_id "Ledus.S1G189300.t1"; gene_id "Ledus.S1G189300"
Ledus.S1	AUGUSTUS	CDS	17236546	17237895	1	+	0	transcript_id "Ledus.S1G189300.t1"; gene_id "Ledus.S1G189300"
Ledus.S1	AUGUSTUS	exon	17236546	17237895	.	+	.	transcript_id "Ledus.S1G189300.t1"; gene_id "Ledus.S1G189300"
Ledus.S1	AUGUSTUS	stop_codon	17237896	17237898	.	+	0	transcript_id "Ledus.S1G189300.t1"; gene_id "Ledus.S1G189300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8282.t1 is derived from g12953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10427888	10428556	.	-	.	Ledus.S5G106000
Ledus.S5	AUGUSTUS	transcript	10427888	10428556	.	-	.	transcript_id "Ledus.S5G106000.t1"; gene_id "Ledus.S5G106000"
Ledus.S5	AUGUSTUS	stop_codon	10427885	10427887	.	-	0	transcript_id "Ledus.S5G106000.t1"; gene_id "Ledus.S5G106000"
Ledus.S5	AUGUSTUS	CDS	10427888	10427968	0.96	-	0	transcript_id "Ledus.S5G106000.t1"; gene_id "Ledus.S5G106000"
Ledus.S5	AUGUSTUS	exon	10427888	10427968	.	-	.	transcript_id "Ledus.S5G106000.t1"; gene_id "Ledus.S5G106000"
Ledus.S5	AUGUSTUS	intron	10427969	10428152	.	-	.	transcript_id "Ledus.S5G106000.t1"; gene_id "Ledus.S5G106000"
Ledus.S5	AUGUSTUS	CDS	10428153	10428224	0.96	-	0	transcript_id "Ledus.S5G106000.t1"; gene_id "Ledus.S5G106000"
Ledus.S5	AUGUSTUS	exon	10428153	10428224	.	-	.	transcript_id "Ledus.S5G106000.t1"; gene_id "Ledus.S5G106000"
Ledus.S5	AUGUSTUS	intron	10428225	10428388	.	-	.	transcript_id "Ledus.S5G106000.t1"; gene_id "Ledus.S5G106000"
Ledus.S5	AUGUSTUS	CDS	10428389	10428556	0.56	-	0	transcript_id "Ledus.S5G106000.t1"; gene_id "Ledus.S5G106000"
Ledus.S5	AUGUSTUS	exon	10428389	10428556	.	-	.	transcript_id "Ledus.S5G106000.t1"; gene_id "Ledus.S5G106000"
Ledus.S5	AUGUSTUS	start_codon	10428554	10428556	.	-	0	transcript_id "Ledus.S5G106000.t1"; gene_id "Ledus.S5G106000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12485.t1 is derived from g6106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12319615	12319890	.	+	.	Ledus.S4G164100
Ledus.S4	AUGUSTUS	transcript	12319615	12319890	.	+	.	transcript_id "Ledus.S4G164100.t1"; gene_id "Ledus.S4G164100"
Ledus.S4	AUGUSTUS	start_codon	12319615	12319617	.	+	0	transcript_id "Ledus.S4G164100.t1"; gene_id "Ledus.S4G164100"
Ledus.S4	AUGUSTUS	CDS	12319615	12319890	0.8	+	0	transcript_id "Ledus.S4G164100.t1"; gene_id "Ledus.S4G164100"
Ledus.S4	AUGUSTUS	exon	12319615	12319890	.	+	.	transcript_id "Ledus.S4G164100.t1"; gene_id "Ledus.S4G164100"
Ledus.S4	AUGUSTUS	stop_codon	12319891	12319893	.	+	0	transcript_id "Ledus.S4G164100.t1"; gene_id "Ledus.S4G164100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6819.t1 is derived from g4263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34440788	34441507	.	-	.	Ledus.S1G424000
Ledus.S1	AUGUSTUS	transcript	34440788	34441507	.	-	.	transcript_id "Ledus.S1G424000.t1"; gene_id "Ledus.S1G424000"
Ledus.S1	AUGUSTUS	stop_codon	34440785	34440787	.	-	0	transcript_id "Ledus.S1G424000.t1"; gene_id "Ledus.S1G424000"
Ledus.S1	AUGUSTUS	CDS	34440788	34441507	0.95	-	0	transcript_id "Ledus.S1G424000.t1"; gene_id "Ledus.S1G424000"
Ledus.S1	AUGUSTUS	exon	34440788	34441507	.	-	.	transcript_id "Ledus.S1G424000.t1"; gene_id "Ledus.S1G424000"
Ledus.S1	AUGUSTUS	start_codon	34441505	34441507	.	-	0	transcript_id "Ledus.S1G424000.t1"; gene_id "Ledus.S1G424000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9523.t1 is derived from g10553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7579197	7580874	.	+	.	Ledus.S3G100000
Ledus.S3	AUGUSTUS	transcript	7579197	7580874	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	start_codon	7579197	7579199	.	+	0	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	CDS	7579197	7579301	0.97	+	0	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	exon	7579197	7579301	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	intron	7579302	7579396	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	CDS	7579397	7579642	1	+	0	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	exon	7579397	7579642	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	intron	7579643	7579863	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	CDS	7579864	7579911	1	+	0	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	exon	7579864	7579911	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	intron	7579912	7579989	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	CDS	7579990	7580046	1	+	0	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	exon	7579990	7580046	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	intron	7580047	7580137	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	CDS	7580138	7580239	0.91	+	0	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	exon	7580138	7580239	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	intron	7580240	7580342	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	CDS	7580343	7580408	1	+	0	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	exon	7580343	7580408	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	intron	7580409	7580567	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	CDS	7580568	7580669	1	+	0	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	exon	7580568	7580669	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	intron	7580670	7580760	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	CDS	7580761	7580874	1	+	0	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	exon	7580761	7580874	.	+	.	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
Ledus.S3	AUGUSTUS	stop_codon	7580875	7580877	.	+	0	transcript_id "Ledus.S3G100000.t1"; gene_id "Ledus.S3G100000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12050.t1 is derived from g5669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9199150	9199380	.	+	.	Ledus.S4G120600
Ledus.S4	AUGUSTUS	transcript	9199150	9199380	.	+	.	transcript_id "Ledus.S4G120600.t1"; gene_id "Ledus.S4G120600"
Ledus.S4	AUGUSTUS	start_codon	9199150	9199152	.	+	0	transcript_id "Ledus.S4G120600.t1"; gene_id "Ledus.S4G120600"
Ledus.S4	AUGUSTUS	CDS	9199150	9199380	0.7	+	0	transcript_id "Ledus.S4G120600.t1"; gene_id "Ledus.S4G120600"
Ledus.S4	AUGUSTUS	exon	9199150	9199380	.	+	.	transcript_id "Ledus.S4G120600.t1"; gene_id "Ledus.S4G120600"
Ledus.S4	AUGUSTUS	stop_codon	9199381	9199383	.	+	0	transcript_id "Ledus.S4G120600.t1"; gene_id "Ledus.S4G120600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3627.t1 is derived from g1063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10268629	10269651	.	+	.	Ledus.S1G104800
Ledus.S1	AUGUSTUS	transcript	10268629	10269651	.	+	.	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	start_codon	10268629	10268631	.	+	0	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	CDS	10268629	10269042	1	+	0	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	exon	10268629	10269042	.	+	.	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	intron	10269043	10269170	.	+	.	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	CDS	10269171	10269287	1	+	0	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	exon	10269171	10269287	.	+	.	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	intron	10269288	10269396	.	+	.	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	CDS	10269397	10269482	1	+	0	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	exon	10269397	10269482	.	+	.	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	intron	10269483	10269578	.	+	.	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	CDS	10269579	10269651	1	+	1	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	exon	10269579	10269651	.	+	.	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
Ledus.S1	AUGUSTUS	stop_codon	10269652	10269654	.	+	0	transcript_id "Ledus.S1G104800.t1"; gene_id "Ledus.S1G104800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6960.t1 is derived from g6491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	389134	390540	.	-	.	Ledus.C7G002100
Ledus.C7	AUGUSTUS	transcript	389134	390540	.	-	.	transcript_id "Ledus.C7G002100.t1"; gene_id "Ledus.C7G002100"
Ledus.C7	AUGUSTUS	stop_codon	389131	389133	.	-	0	transcript_id "Ledus.C7G002100.t1"; gene_id "Ledus.C7G002100"
Ledus.C7	AUGUSTUS	CDS	389134	390540	0.67	-	0	transcript_id "Ledus.C7G002100.t1"; gene_id "Ledus.C7G002100"
Ledus.C7	AUGUSTUS	exon	389134	390540	.	-	.	transcript_id "Ledus.C7G002100.t1"; gene_id "Ledus.C7G002100"
Ledus.C7	AUGUSTUS	start_codon	390538	390540	.	-	0	transcript_id "Ledus.C7G002100.t1"; gene_id "Ledus.C7G002100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5890.t1 is derived from g3333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27610187	27610652	.	-	.	Ledus.S1G331100
Ledus.S1	AUGUSTUS	transcript	27610187	27610652	.	-	.	transcript_id "Ledus.S1G331100.t1"; gene_id "Ledus.S1G331100"
Ledus.S1	AUGUSTUS	stop_codon	27610184	27610186	.	-	0	transcript_id "Ledus.S1G331100.t1"; gene_id "Ledus.S1G331100"
Ledus.S1	AUGUSTUS	CDS	27610187	27610205	0.76	-	1	transcript_id "Ledus.S1G331100.t1"; gene_id "Ledus.S1G331100"
Ledus.S1	AUGUSTUS	exon	27610187	27610205	.	-	.	transcript_id "Ledus.S1G331100.t1"; gene_id "Ledus.S1G331100"
Ledus.S1	AUGUSTUS	intron	27610206	27610350	.	-	.	transcript_id "Ledus.S1G331100.t1"; gene_id "Ledus.S1G331100"
Ledus.S1	AUGUSTUS	CDS	27610351	27610406	0.72	-	0	transcript_id "Ledus.S1G331100.t1"; gene_id "Ledus.S1G331100"
Ledus.S1	AUGUSTUS	exon	27610351	27610406	.	-	.	transcript_id "Ledus.S1G331100.t1"; gene_id "Ledus.S1G331100"
Ledus.S1	AUGUSTUS	intron	27610407	27610499	.	-	.	transcript_id "Ledus.S1G331100.t1"; gene_id "Ledus.S1G331100"
Ledus.S1	AUGUSTUS	CDS	27610500	27610652	0.4	-	0	transcript_id "Ledus.S1G331100.t1"; gene_id "Ledus.S1G331100"
Ledus.S1	AUGUSTUS	exon	27610500	27610652	.	-	.	transcript_id "Ledus.S1G331100.t1"; gene_id "Ledus.S1G331100"
Ledus.S1	AUGUSTUS	start_codon	27610650	27610652	.	-	0	transcript_id "Ledus.S1G331100.t1"; gene_id "Ledus.S1G331100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12027.t1 is derived from g5646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8974302	8974854	.	-	.	Ledus.S4G118300
Ledus.S4	AUGUSTUS	transcript	8974302	8974854	.	-	.	transcript_id "Ledus.S4G118300.t1"; gene_id "Ledus.S4G118300"
Ledus.S4	AUGUSTUS	stop_codon	8974299	8974301	.	-	0	transcript_id "Ledus.S4G118300.t1"; gene_id "Ledus.S4G118300"
Ledus.S4	AUGUSTUS	CDS	8974302	8974365	0.26	-	1	transcript_id "Ledus.S4G118300.t1"; gene_id "Ledus.S4G118300"
Ledus.S4	AUGUSTUS	exon	8974302	8974365	.	-	.	transcript_id "Ledus.S4G118300.t1"; gene_id "Ledus.S4G118300"
Ledus.S4	AUGUSTUS	intron	8974366	8974459	.	-	.	transcript_id "Ledus.S4G118300.t1"; gene_id "Ledus.S4G118300"
Ledus.S4	AUGUSTUS	CDS	8974460	8974854	0.11	-	0	transcript_id "Ledus.S4G118300.t1"; gene_id "Ledus.S4G118300"
Ledus.S4	AUGUSTUS	exon	8974460	8974854	.	-	.	transcript_id "Ledus.S4G118300.t1"; gene_id "Ledus.S4G118300"
Ledus.S4	AUGUSTUS	start_codon	8974852	8974854	.	-	0	transcript_id "Ledus.S4G118300.t1"; gene_id "Ledus.S4G118300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5895.t1 is derived from g3338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27682521	27683406	.	-	.	Ledus.S1G331600
Ledus.S1	AUGUSTUS	transcript	27682521	27683406	.	-	.	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	stop_codon	27682518	27682520	.	-	0	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	CDS	27682521	27682727	0.66	-	0	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	exon	27682521	27682727	.	-	.	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	intron	27682728	27682884	.	-	.	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	CDS	27682885	27682891	0.68	-	1	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	exon	27682885	27682891	.	-	.	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	intron	27682892	27682969	.	-	.	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	CDS	27682970	27682986	0.68	-	0	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	exon	27682970	27682986	.	-	.	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	intron	27682987	27683115	.	-	.	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	CDS	27683116	27683406	0.58	-	0	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	exon	27683116	27683406	.	-	.	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
Ledus.S1	AUGUSTUS	start_codon	27683404	27683406	.	-	0	transcript_id "Ledus.S1G331600.t1"; gene_id "Ledus.S1G331600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9542.t1 is derived from g10572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7659905	7661149	.	+	.	Ledus.S3G101900
Ledus.S3	AUGUSTUS	transcript	7659905	7661149	.	+	.	transcript_id "Ledus.S3G101900.t1"; gene_id "Ledus.S3G101900"
Ledus.S3	AUGUSTUS	start_codon	7659905	7659907	.	+	0	transcript_id "Ledus.S3G101900.t1"; gene_id "Ledus.S3G101900"
Ledus.S3	AUGUSTUS	CDS	7659905	7660016	0.99	+	0	transcript_id "Ledus.S3G101900.t1"; gene_id "Ledus.S3G101900"
Ledus.S3	AUGUSTUS	exon	7659905	7660016	.	+	.	transcript_id "Ledus.S3G101900.t1"; gene_id "Ledus.S3G101900"
Ledus.S3	AUGUSTUS	intron	7660017	7660200	.	+	.	transcript_id "Ledus.S3G101900.t1"; gene_id "Ledus.S3G101900"
Ledus.S3	AUGUSTUS	CDS	7660201	7660325	1	+	2	transcript_id "Ledus.S3G101900.t1"; gene_id "Ledus.S3G101900"
Ledus.S3	AUGUSTUS	exon	7660201	7660325	.	+	.	transcript_id "Ledus.S3G101900.t1"; gene_id "Ledus.S3G101900"
Ledus.S3	AUGUSTUS	intron	7660326	7660408	.	+	.	transcript_id "Ledus.S3G101900.t1"; gene_id "Ledus.S3G101900"
Ledus.S3	AUGUSTUS	CDS	7660409	7661149	0.28	+	0	transcript_id "Ledus.S3G101900.t1"; gene_id "Ledus.S3G101900"
Ledus.S3	AUGUSTUS	exon	7660409	7661149	.	+	.	transcript_id "Ledus.S3G101900.t1"; gene_id "Ledus.S3G101900"
Ledus.S3	AUGUSTUS	stop_codon	7661150	7661152	.	+	0	transcript_id "Ledus.S3G101900.t1"; gene_id "Ledus.S3G101900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9507.t1 is derived from g10537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7503892	7506156	.	+	.	Ledus.S3G098400
Ledus.S3	AUGUSTUS	transcript	7503892	7506156	.	+	.	transcript_id "Ledus.S3G098400.t1"; gene_id "Ledus.S3G098400"
Ledus.S3	AUGUSTUS	start_codon	7503892	7503894	.	+	0	transcript_id "Ledus.S3G098400.t1"; gene_id "Ledus.S3G098400"
Ledus.S3	AUGUSTUS	CDS	7503892	7505296	0.66	+	0	transcript_id "Ledus.S3G098400.t1"; gene_id "Ledus.S3G098400"
Ledus.S3	AUGUSTUS	exon	7503892	7505296	.	+	.	transcript_id "Ledus.S3G098400.t1"; gene_id "Ledus.S3G098400"
Ledus.S3	AUGUSTUS	intron	7505297	7505374	.	+	.	transcript_id "Ledus.S3G098400.t1"; gene_id "Ledus.S3G098400"
Ledus.S3	AUGUSTUS	CDS	7505375	7505595	0.98	+	2	transcript_id "Ledus.S3G098400.t1"; gene_id "Ledus.S3G098400"
Ledus.S3	AUGUSTUS	exon	7505375	7505595	.	+	.	transcript_id "Ledus.S3G098400.t1"; gene_id "Ledus.S3G098400"
Ledus.S3	AUGUSTUS	intron	7505596	7505709	.	+	.	transcript_id "Ledus.S3G098400.t1"; gene_id "Ledus.S3G098400"
Ledus.S3	AUGUSTUS	CDS	7505710	7506156	0.49	+	0	transcript_id "Ledus.S3G098400.t1"; gene_id "Ledus.S3G098400"
Ledus.S3	AUGUSTUS	exon	7505710	7506156	.	+	.	transcript_id "Ledus.S3G098400.t1"; gene_id "Ledus.S3G098400"
Ledus.S3	AUGUSTUS	stop_codon	7506157	7506159	.	+	0	transcript_id "Ledus.S3G098400.t1"; gene_id "Ledus.S3G098400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3026.t1 is derived from g461.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5381675	5383364	.	-	.	Ledus.S1G044700
Ledus.S1	AUGUSTUS	transcript	5381675	5383364	.	-	.	transcript_id "Ledus.S1G044700.t1"; gene_id "Ledus.S1G044700"
Ledus.S1	AUGUSTUS	stop_codon	5381672	5381674	.	-	0	transcript_id "Ledus.S1G044700.t1"; gene_id "Ledus.S1G044700"
Ledus.S1	AUGUSTUS	CDS	5381675	5382453	0.57	-	2	transcript_id "Ledus.S1G044700.t1"; gene_id "Ledus.S1G044700"
Ledus.S1	AUGUSTUS	exon	5381675	5382453	.	-	.	transcript_id "Ledus.S1G044700.t1"; gene_id "Ledus.S1G044700"
Ledus.S1	AUGUSTUS	intron	5382454	5382607	.	-	.	transcript_id "Ledus.S1G044700.t1"; gene_id "Ledus.S1G044700"
Ledus.S1	AUGUSTUS	CDS	5382608	5383364	0.64	-	0	transcript_id "Ledus.S1G044700.t1"; gene_id "Ledus.S1G044700"
Ledus.S1	AUGUSTUS	exon	5382608	5383364	.	-	.	transcript_id "Ledus.S1G044700.t1"; gene_id "Ledus.S1G044700"
Ledus.S1	AUGUSTUS	start_codon	5383362	5383364	.	-	0	transcript_id "Ledus.S1G044700.t1"; gene_id "Ledus.S1G044700"
# This transcript jg3774.t2 is derived from g1210.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3775.t1 is derived from g1211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11927344	11930384	.	+	.	Ledus.S1G119600
Ledus.S1	AUGUSTUS	transcript	11927344	11930384	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	start_codon	11927344	11927346	.	+	0	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11927344	11927382	0.96	+	0	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11927344	11927382	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	intron	11927383	11927476	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11927477	11927734	1	+	0	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11927477	11927734	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	intron	11927735	11927856	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11927857	11928153	1	+	0	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11927857	11928153	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	intron	11928154	11928337	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11928338	11928505	1	+	0	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11928338	11928505	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	intron	11928506	11928634	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11928635	11928802	1	+	0	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11928635	11928802	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	intron	11928803	11928990	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11928991	11929071	1	+	0	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11928991	11929071	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	intron	11929072	11929208	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11929209	11929275	1	+	0	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11929209	11929275	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	intron	11929276	11929373	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11929374	11929471	1	+	2	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11929374	11929471	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	intron	11929472	11929626	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11929627	11929699	1	+	0	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11929627	11929699	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	intron	11929700	11929780	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11929781	11929851	1	+	2	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11929781	11929851	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	intron	11929852	11929930	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11929931	11929980	1	+	0	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11929931	11929980	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	intron	11929981	11930108	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11930109	11930221	1	+	1	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11930109	11930221	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	intron	11930222	11930340	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	CDS	11930341	11930384	1	+	2	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	exon	11930341	11930384	.	+	.	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
Ledus.S1	AUGUSTUS	stop_codon	11930385	11930387	.	+	0	transcript_id "Ledus.S1G119600.t1"; gene_id "Ledus.S1G119600"
# This transcript jg4105.t2 is derived from g1541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4106.t1 is derived from g1542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14723020	14725902	.	-	.	Ledus.S1G152700
Ledus.S1	AUGUSTUS	transcript	14723020	14725902	.	-	.	transcript_id "Ledus.S1G152700.t1"; gene_id "Ledus.S1G152700"
Ledus.S1	AUGUSTUS	stop_codon	14723017	14723019	.	-	0	transcript_id "Ledus.S1G152700.t1"; gene_id "Ledus.S1G152700"
Ledus.S1	AUGUSTUS	CDS	14723020	14725902	0.99	-	0	transcript_id "Ledus.S1G152700.t1"; gene_id "Ledus.S1G152700"
Ledus.S1	AUGUSTUS	exon	14723020	14725902	.	-	.	transcript_id "Ledus.S1G152700.t1"; gene_id "Ledus.S1G152700"
Ledus.S1	AUGUSTUS	start_codon	14725900	14725902	.	-	0	transcript_id "Ledus.S1G152700.t1"; gene_id "Ledus.S1G152700"
# This transcript jg92.t2 is derived from g9505.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg92.t3 is derived from g9505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg92.t4 is derived from g9505.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg93.t1 is derived from g9506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	388223	389402	.	+	.	Ledus.C8G005300
Ledus.C8	AUGUSTUS	transcript	388223	389402	.	+	.	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	start_codon	388223	388225	.	+	0	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	CDS	388223	388428	0.91	+	0	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	exon	388223	388428	.	+	.	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	intron	388429	388604	.	+	.	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	CDS	388605	388703	1	+	1	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	exon	388605	388703	.	+	.	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	intron	388704	388790	.	+	.	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	CDS	388791	388899	1	+	1	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	exon	388791	388899	.	+	.	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	intron	388900	388982	.	+	.	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	CDS	388983	389054	1	+	0	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	exon	388983	389054	.	+	.	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	intron	389055	389196	.	+	.	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	CDS	389197	389202	1	+	0	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	exon	389197	389202	.	+	.	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	intron	389203	389288	.	+	.	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	CDS	389289	389402	0.95	+	0	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	exon	389289	389402	.	+	.	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
Ledus.C8	AUGUSTUS	stop_codon	389403	389405	.	+	0	transcript_id "Ledus.C8G005300.t1"; gene_id "Ledus.C8G005300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12531.t1 is derived from g6152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12748157	12751161	.	+	.	Ledus.S4G168700
Ledus.S4	AUGUSTUS	transcript	12748157	12751161	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	start_codon	12748157	12748159	.	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12748157	12748366	1	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12748157	12748366	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	intron	12748367	12748478	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12748479	12748575	0.99	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12748479	12748575	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	intron	12748576	12748666	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12748667	12748855	1	+	2	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12748667	12748855	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	intron	12748856	12749156	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12749157	12749257	1	+	2	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12749157	12749257	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	intron	12749258	12749347	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12749348	12749419	1	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12749348	12749419	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	intron	12749420	12749514	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12749515	12749598	1	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12749515	12749598	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	intron	12749599	12749748	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12749749	12749874	1	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12749749	12749874	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	intron	12749875	12750042	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12750043	12750192	1	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12750043	12750192	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	intron	12750193	12750273	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12750274	12750387	1	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12750274	12750387	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	intron	12750388	12750526	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12750527	12750565	1	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12750527	12750565	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	intron	12750566	12750661	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12750662	12750730	1	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12750662	12750730	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	intron	12750731	12750810	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12750811	12750909	1	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12750811	12750909	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	intron	12750910	12750999	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	CDS	12751000	12751161	0.99	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	exon	12751000	12751161	.	+	.	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
Ledus.S4	AUGUSTUS	stop_codon	12751162	12751164	.	+	0	transcript_id "Ledus.S4G168700.t1"; gene_id "Ledus.S4G168700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10893.t1 is derived from g4511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	346599	348476	.	-	.	Ledus.S4G004900
Ledus.S4	AUGUSTUS	transcript	346599	348476	.	-	.	transcript_id "Ledus.S4G004900.t1"; gene_id "Ledus.S4G004900"
Ledus.S4	AUGUSTUS	stop_codon	346596	346598	.	-	0	transcript_id "Ledus.S4G004900.t1"; gene_id "Ledus.S4G004900"
Ledus.S4	AUGUSTUS	CDS	346599	347355	1	-	1	transcript_id "Ledus.S4G004900.t1"; gene_id "Ledus.S4G004900"
Ledus.S4	AUGUSTUS	exon	346599	347355	.	-	.	transcript_id "Ledus.S4G004900.t1"; gene_id "Ledus.S4G004900"
Ledus.S4	AUGUSTUS	intron	347356	347688	.	-	.	transcript_id "Ledus.S4G004900.t1"; gene_id "Ledus.S4G004900"
Ledus.S4	AUGUSTUS	CDS	347689	348476	0.97	-	0	transcript_id "Ledus.S4G004900.t1"; gene_id "Ledus.S4G004900"
Ledus.S4	AUGUSTUS	exon	347689	348476	.	-	.	transcript_id "Ledus.S4G004900.t1"; gene_id "Ledus.S4G004900"
Ledus.S4	AUGUSTUS	start_codon	348474	348476	.	-	0	transcript_id "Ledus.S4G004900.t1"; gene_id "Ledus.S4G004900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg282.t1 is derived from g7143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1388851	1390140	.	-	.	Ledus.S2G016400
Ledus.S2	AUGUSTUS	transcript	1388851	1390140	.	-	.	transcript_id "Ledus.S2G016400.t1"; gene_id "Ledus.S2G016400"
Ledus.S2	AUGUSTUS	stop_codon	1388848	1388850	.	-	0	transcript_id "Ledus.S2G016400.t1"; gene_id "Ledus.S2G016400"
Ledus.S2	AUGUSTUS	CDS	1388851	1390140	0.99	-	0	transcript_id "Ledus.S2G016400.t1"; gene_id "Ledus.S2G016400"
Ledus.S2	AUGUSTUS	exon	1388851	1390140	.	-	.	transcript_id "Ledus.S2G016400.t1"; gene_id "Ledus.S2G016400"
Ledus.S2	AUGUSTUS	start_codon	1390138	1390140	.	-	0	transcript_id "Ledus.S2G016400.t1"; gene_id "Ledus.S2G016400"
Ledus.S2	AUGUSTUS	transcript	1388851	1389702	.	-	.	transcript_id "Ledus.S2G016400.t2"; gene_id "Ledus.S2G016400"
Ledus.S2	AUGUSTUS	stop_codon	1388848	1388850	.	-	0	transcript_id "Ledus.S2G016400.t2"; gene_id "Ledus.S2G016400"
Ledus.S2	AUGUSTUS	CDS	1388851	1389702	0.49	-	0	transcript_id "Ledus.S2G016400.t2"; gene_id "Ledus.S2G016400"
Ledus.S2	AUGUSTUS	exon	1388851	1389702	.	-	.	transcript_id "Ledus.S2G016400.t2"; gene_id "Ledus.S2G016400"
Ledus.S2	AUGUSTUS	start_codon	1389700	1389702	.	-	0	transcript_id "Ledus.S2G016400.t2"; gene_id "Ledus.S2G016400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg42.t1 is derived from g9455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	38913	39131	.	+	.	Ledus.C8G000200
Ledus.C8	AUGUSTUS	transcript	38913	39131	.	+	.	transcript_id "Ledus.C8G000200.t1"; gene_id "Ledus.C8G000200"
Ledus.C8	AUGUSTUS	start_codon	38913	38915	.	+	0	transcript_id "Ledus.C8G000200.t1"; gene_id "Ledus.C8G000200"
Ledus.C8	AUGUSTUS	CDS	38913	39131	0.64	+	0	transcript_id "Ledus.C8G000200.t1"; gene_id "Ledus.C8G000200"
Ledus.C8	AUGUSTUS	exon	38913	39131	.	+	.	transcript_id "Ledus.C8G000200.t1"; gene_id "Ledus.C8G000200"
Ledus.C8	AUGUSTUS	stop_codon	39132	39134	.	+	0	transcript_id "Ledus.C8G000200.t1"; gene_id "Ledus.C8G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1050.t1 is derived from g7911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7004973	7007091	.	+	.	Ledus.S2G093200
Ledus.S2	AUGUSTUS	transcript	7004973	7007091	.	+	.	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	start_codon	7004973	7004975	.	+	0	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	CDS	7004973	7005357	0.94	+	0	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	exon	7004973	7005357	.	+	.	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	intron	7005358	7005444	.	+	.	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	CDS	7005445	7005631	0.91	+	2	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	exon	7005445	7005631	.	+	.	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	intron	7005632	7006094	.	+	.	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	CDS	7006095	7006111	0.91	+	1	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	exon	7006095	7006111	.	+	.	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	intron	7006112	7006203	.	+	.	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	CDS	7006204	7006247	0.91	+	2	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	exon	7006204	7006247	.	+	.	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	intron	7006248	7006341	.	+	.	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	CDS	7006342	7006703	0.63	+	0	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	exon	7006342	7006703	.	+	.	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	intron	7006704	7006844	.	+	.	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	CDS	7006845	7007091	0.86	+	1	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	exon	7006845	7007091	.	+	.	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
Ledus.S2	AUGUSTUS	stop_codon	7007092	7007094	.	+	0	transcript_id "Ledus.S2G093200.t1"; gene_id "Ledus.S2G093200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2324.t1 is derived from g9187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17181880	17184627	.	+	.	Ledus.S2G220600
Ledus.S2	AUGUSTUS	transcript	17181880	17184627	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	start_codon	17181880	17181882	.	+	0	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	CDS	17181880	17182606	1	+	0	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	exon	17181880	17182606	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	intron	17182607	17183039	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	CDS	17183040	17183119	1	+	2	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	exon	17183040	17183119	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	intron	17183120	17183349	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	CDS	17183350	17183427	1	+	0	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	exon	17183350	17183427	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	intron	17183428	17183608	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	CDS	17183609	17183704	1	+	0	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	exon	17183609	17183704	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	intron	17183705	17183832	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	CDS	17183833	17183904	1	+	0	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	exon	17183833	17183904	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	intron	17183905	17184015	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	CDS	17184016	17184069	1	+	0	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	exon	17184016	17184069	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	intron	17184070	17184412	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	CDS	17184413	17184478	1	+	0	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	exon	17184413	17184478	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	intron	17184479	17184585	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	CDS	17184586	17184627	1	+	0	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	exon	17184586	17184627	.	+	.	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
Ledus.S2	AUGUSTUS	stop_codon	17184628	17184630	.	+	0	transcript_id "Ledus.S2G220600.t1"; gene_id "Ledus.S2G220600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11657.t1 is derived from g5276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5756873	5757775	.	-	.	Ledus.S4G081300
Ledus.S4	AUGUSTUS	transcript	5756873	5757775	.	-	.	transcript_id "Ledus.S4G081300.t1"; gene_id "Ledus.S4G081300"
Ledus.S4	AUGUSTUS	stop_codon	5756870	5756872	.	-	0	transcript_id "Ledus.S4G081300.t1"; gene_id "Ledus.S4G081300"
Ledus.S4	AUGUSTUS	CDS	5756873	5757775	0.98	-	0	transcript_id "Ledus.S4G081300.t1"; gene_id "Ledus.S4G081300"
Ledus.S4	AUGUSTUS	exon	5756873	5757775	.	-	.	transcript_id "Ledus.S4G081300.t1"; gene_id "Ledus.S4G081300"
Ledus.S4	AUGUSTUS	start_codon	5757773	5757775	.	-	0	transcript_id "Ledus.S4G081300.t1"; gene_id "Ledus.S4G081300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11694.t1 is derived from g5313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6044256	6046407	.	+	.	Ledus.S4G085000
Ledus.S4	AUGUSTUS	transcript	6044256	6046407	.	+	.	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	start_codon	6044256	6044258	.	+	0	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	CDS	6044256	6045080	0.36	+	0	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	exon	6044256	6045080	.	+	.	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	intron	6045081	6045171	.	+	.	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	CDS	6045172	6045480	0.99	+	0	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	exon	6045172	6045480	.	+	.	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	intron	6045481	6045587	.	+	.	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	CDS	6045588	6045719	0.97	+	0	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	exon	6045588	6045719	.	+	.	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	intron	6045720	6045881	.	+	.	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	CDS	6045882	6046201	0.91	+	0	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	exon	6045882	6046201	.	+	.	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	intron	6046202	6046313	.	+	.	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	CDS	6046314	6046407	1	+	1	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	exon	6046314	6046407	.	+	.	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
Ledus.S4	AUGUSTUS	stop_codon	6046408	6046410	.	+	0	transcript_id "Ledus.S4G085000.t1"; gene_id "Ledus.S4G085000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10423.t1 is derived from g11453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15062482	15066393	.	+	.	Ledus.S3G190000
Ledus.S3	AUGUSTUS	transcript	15062482	15066393	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	start_codon	15062482	15062484	.	+	0	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15062482	15062541	0.23	+	0	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15062482	15062541	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	intron	15062542	15062659	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15062660	15062731	0.36	+	0	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15062660	15062731	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	intron	15062732	15062813	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15062814	15063004	0.35	+	0	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15062814	15063004	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	intron	15063005	15063089	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15063090	15063213	1	+	1	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15063090	15063213	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	intron	15063214	15063341	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15063342	15063439	1	+	0	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15063342	15063439	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	intron	15063440	15063555	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15063556	15063669	0.99	+	1	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15063556	15063669	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	intron	15063670	15063783	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15063784	15063844	0.95	+	1	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15063784	15063844	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	intron	15063845	15063945	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15063946	15064095	0.95	+	0	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15063946	15064095	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	intron	15064096	15064307	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15064308	15064418	1	+	0	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15064308	15064418	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	intron	15064419	15064564	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15064565	15064732	1	+	0	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15064565	15064732	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	intron	15064733	15064876	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15064877	15064990	1	+	0	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15064877	15064990	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	intron	15064991	15065060	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15065061	15065117	1	+	0	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15065061	15065117	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	intron	15065118	15065253	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	CDS	15065254	15066393	0.88	+	0	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	exon	15065254	15066393	.	+	.	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
Ledus.S3	AUGUSTUS	stop_codon	15066394	15066396	.	+	0	transcript_id "Ledus.S3G190000.t1"; gene_id "Ledus.S3G190000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7956.t1 is derived from g12627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8116661	8117486	.	+	.	Ledus.S5G073400
Ledus.S5	AUGUSTUS	transcript	8116661	8117486	.	+	.	transcript_id "Ledus.S5G073400.t1"; gene_id "Ledus.S5G073400"
Ledus.S5	AUGUSTUS	start_codon	8116661	8116663	.	+	0	transcript_id "Ledus.S5G073400.t1"; gene_id "Ledus.S5G073400"
Ledus.S5	AUGUSTUS	CDS	8116661	8117239	0.87	+	0	transcript_id "Ledus.S5G073400.t1"; gene_id "Ledus.S5G073400"
Ledus.S5	AUGUSTUS	exon	8116661	8117239	.	+	.	transcript_id "Ledus.S5G073400.t1"; gene_id "Ledus.S5G073400"
Ledus.S5	AUGUSTUS	intron	8117240	8117324	.	+	.	transcript_id "Ledus.S5G073400.t1"; gene_id "Ledus.S5G073400"
Ledus.S5	AUGUSTUS	CDS	8117325	8117486	0.93	+	0	transcript_id "Ledus.S5G073400.t1"; gene_id "Ledus.S5G073400"
Ledus.S5	AUGUSTUS	exon	8117325	8117486	.	+	.	transcript_id "Ledus.S5G073400.t1"; gene_id "Ledus.S5G073400"
Ledus.S5	AUGUSTUS	stop_codon	8117487	8117489	.	+	0	transcript_id "Ledus.S5G073400.t1"; gene_id "Ledus.S5G073400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12525.t1 is derived from g6146.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12730870	12731323	.	-	.	Ledus.S4G168100
Ledus.S4	AUGUSTUS	transcript	12730893	12731323	.	-	.	transcript_id "Ledus.S4G168100.t1"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	stop_codon	12730890	12730892	.	-	0	transcript_id "Ledus.S4G168100.t1"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	CDS	12730893	12731007	0.75	-	1	transcript_id "Ledus.S4G168100.t1"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	exon	12730893	12731007	.	-	.	transcript_id "Ledus.S4G168100.t1"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	intron	12731008	12731141	.	-	.	transcript_id "Ledus.S4G168100.t1"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	CDS	12731142	12731323	0.65	-	0	transcript_id "Ledus.S4G168100.t1"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	exon	12731142	12731323	.	-	.	transcript_id "Ledus.S4G168100.t1"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	start_codon	12731321	12731323	.	-	0	transcript_id "Ledus.S4G168100.t1"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	transcript	12730870	12731323	.	-	.	transcript_id "Ledus.S4G168100.t2"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	stop_codon	12730867	12730869	.	-	0	transcript_id "Ledus.S4G168100.t2"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	CDS	12730870	12730999	0.6	-	1	transcript_id "Ledus.S4G168100.t2"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	exon	12730870	12730999	.	-	.	transcript_id "Ledus.S4G168100.t2"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	intron	12731000	12731141	.	-	.	transcript_id "Ledus.S4G168100.t2"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	CDS	12731142	12731323	0.66	-	0	transcript_id "Ledus.S4G168100.t2"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	exon	12731142	12731323	.	-	.	transcript_id "Ledus.S4G168100.t2"; gene_id "Ledus.S4G168100"
Ledus.S4	AUGUSTUS	start_codon	12731321	12731323	.	-	0	transcript_id "Ledus.S4G168100.t2"; gene_id "Ledus.S4G168100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3737.t1 is derived from g1173.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11260166	11264820	.	+	.	Ledus.S1G115800
Ledus.S1	AUGUSTUS	transcript	11260166	11264820	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	start_codon	11260166	11260168	.	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11260166	11260291	1	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11260166	11260291	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11260292	11260374	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11260375	11260482	1	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11260375	11260482	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11260483	11260744	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11260745	11260830	1	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11260745	11260830	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11260831	11261302	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11261303	11261387	1	+	1	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11261303	11261387	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11261388	11261468	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11261469	11261555	1	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11261469	11261555	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11261556	11261643	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11261644	11261705	1	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11261644	11261705	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11261706	11261852	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11261853	11262043	0.98	+	1	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11261853	11262043	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11262044	11262143	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11262144	11262204	1	+	2	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11262144	11262204	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11262205	11262327	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11262328	11262505	1	+	1	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11262328	11262505	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11262506	11262628	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11262629	11262667	1	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11262629	11262667	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11262668	11262801	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11262802	11262863	1	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11262802	11262863	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11262864	11262942	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11262943	11262979	1	+	1	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11262943	11262979	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11262980	11263077	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11263078	11263127	1	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11263078	11263127	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11263128	11263244	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11263245	11263314	1	+	1	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11263245	11263314	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11263315	11263479	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11263480	11263555	1	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11263480	11263555	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11263556	11263638	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11263639	11263709	1	+	2	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11263639	11263709	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11263710	11263856	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11263857	11263925	1	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11263857	11263925	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11263926	11264128	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11264129	11264162	0.7	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11264129	11264162	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11264163	11264603	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11264604	11264661	0.37	+	2	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11264604	11264661	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11264662	11264798	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11264799	11264820	0.46	+	1	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11264799	11264820	.	+	.	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	stop_codon	11264821	11264823	.	+	0	transcript_id "Ledus.S1G115800.t1"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	transcript	11260166	11264820	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	start_codon	11260166	11260168	.	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11260166	11260291	1	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11260166	11260291	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11260292	11260374	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11260375	11260482	1	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11260375	11260482	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11260483	11260744	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11260745	11260830	1	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11260745	11260830	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11260831	11261302	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11261303	11261387	1	+	1	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11261303	11261387	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11261388	11261468	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11261469	11261555	1	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11261469	11261555	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11261556	11261643	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11261644	11261705	1	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11261644	11261705	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11261706	11261852	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11261853	11262043	1	+	1	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11261853	11262043	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11262044	11262143	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11262144	11262204	1	+	2	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11262144	11262204	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11262205	11262327	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11262328	11262505	1	+	1	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11262328	11262505	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11262506	11262628	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11262629	11262667	1	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11262629	11262667	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11262668	11262801	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11262802	11262863	1	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11262802	11262863	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11262864	11262942	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11262943	11262979	1	+	1	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11262943	11262979	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11262980	11263077	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11263078	11263127	1	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11263078	11263127	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11263128	11263244	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11263245	11263404	0.95	+	1	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11263245	11263404	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11263405	11263479	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11263480	11263555	0.98	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11263480	11263555	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11263556	11263638	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11263639	11263709	1	+	2	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11263639	11263709	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11263710	11263856	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11263857	11263925	1	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11263857	11263925	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11263926	11264128	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11264129	11264162	0.66	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11264129	11264162	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11264163	11264603	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11264604	11264661	0.25	+	2	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11264604	11264661	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	intron	11264662	11264798	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	CDS	11264799	11264820	0.4	+	1	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	exon	11264799	11264820	.	+	.	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
Ledus.S1	AUGUSTUS	stop_codon	11264821	11264823	.	+	0	transcript_id "Ledus.S1G115800.t2"; gene_id "Ledus.S1G115800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13151.t1 is derived from g6961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7481402	7481899	.	-	.	Ledus.S6G021300
Ledus.S6	AUGUSTUS	transcript	7481402	7481899	.	-	.	transcript_id "Ledus.S6G021300.t1"; gene_id "Ledus.S6G021300"
Ledus.S6	AUGUSTUS	stop_codon	7481399	7481401	.	-	0	transcript_id "Ledus.S6G021300.t1"; gene_id "Ledus.S6G021300"
Ledus.S6	AUGUSTUS	CDS	7481402	7481899	0.68	-	0	transcript_id "Ledus.S6G021300.t1"; gene_id "Ledus.S6G021300"
Ledus.S6	AUGUSTUS	exon	7481402	7481899	.	-	.	transcript_id "Ledus.S6G021300.t1"; gene_id "Ledus.S6G021300"
Ledus.S6	AUGUSTUS	start_codon	7481897	7481899	.	-	0	transcript_id "Ledus.S6G021300.t1"; gene_id "Ledus.S6G021300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8015.t1 is derived from g12686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8487524	8488891	.	+	.	Ledus.S5G079300
Ledus.S5	AUGUSTUS	transcript	8487524	8488891	.	+	.	transcript_id "Ledus.S5G079300.t1"; gene_id "Ledus.S5G079300"
Ledus.S5	AUGUSTUS	start_codon	8487524	8487526	.	+	0	transcript_id "Ledus.S5G079300.t1"; gene_id "Ledus.S5G079300"
Ledus.S5	AUGUSTUS	CDS	8487524	8488891	0.48	+	0	transcript_id "Ledus.S5G079300.t1"; gene_id "Ledus.S5G079300"
Ledus.S5	AUGUSTUS	exon	8487524	8488891	.	+	.	transcript_id "Ledus.S5G079300.t1"; gene_id "Ledus.S5G079300"
Ledus.S5	AUGUSTUS	stop_codon	8488892	8488894	.	+	0	transcript_id "Ledus.S5G079300.t1"; gene_id "Ledus.S5G079300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3087.t1 is derived from g522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5799886	5802703	.	+	.	Ledus.S1G050800
Ledus.S1	AUGUSTUS	transcript	5799886	5802703	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	start_codon	5799886	5799888	.	+	0	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5799886	5800011	0.68	+	0	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5799886	5800011	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	intron	5800012	5800131	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5800132	5800284	1	+	0	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5800132	5800284	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	intron	5800285	5800374	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5800375	5800426	1	+	0	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5800375	5800426	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	intron	5800427	5800530	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5800531	5800800	1	+	2	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5800531	5800800	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	intron	5800801	5800931	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5800932	5801143	0.97	+	2	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5800932	5801143	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	intron	5801144	5801262	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5801263	5801383	0.85	+	0	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5801263	5801383	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	intron	5801384	5801493	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5801494	5801581	0.99	+	2	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5801494	5801581	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	intron	5801582	5801670	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5801671	5801749	1	+	1	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5801671	5801749	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	intron	5801750	5801825	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5801826	5801913	1	+	0	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5801826	5801913	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	intron	5801914	5802003	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5802004	5802044	1	+	2	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5802004	5802044	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	intron	5802045	5802135	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5802136	5802188	1	+	0	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5802136	5802188	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	intron	5802189	5802259	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5802260	5802416	1	+	1	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5802260	5802416	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	intron	5802417	5802526	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	CDS	5802527	5802703	0.93	+	0	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	exon	5802527	5802703	.	+	.	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
Ledus.S1	AUGUSTUS	stop_codon	5802704	5802706	.	+	0	transcript_id "Ledus.S1G050800.t1"; gene_id "Ledus.S1G050800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9035.t1 is derived from g10065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3956622	3959114	.	+	.	Ledus.S3G051200
Ledus.S3	AUGUSTUS	transcript	3956622	3959114	.	+	.	transcript_id "Ledus.S3G051200.t1"; gene_id "Ledus.S3G051200"
Ledus.S3	AUGUSTUS	start_codon	3956622	3956624	.	+	0	transcript_id "Ledus.S3G051200.t1"; gene_id "Ledus.S3G051200"
Ledus.S3	AUGUSTUS	CDS	3956622	3958628	0.07	+	0	transcript_id "Ledus.S3G051200.t1"; gene_id "Ledus.S3G051200"
Ledus.S3	AUGUSTUS	exon	3956622	3958628	.	+	.	transcript_id "Ledus.S3G051200.t1"; gene_id "Ledus.S3G051200"
Ledus.S3	AUGUSTUS	intron	3958629	3958746	.	+	.	transcript_id "Ledus.S3G051200.t1"; gene_id "Ledus.S3G051200"
Ledus.S3	AUGUSTUS	CDS	3958747	3958836	0.83	+	0	transcript_id "Ledus.S3G051200.t1"; gene_id "Ledus.S3G051200"
Ledus.S3	AUGUSTUS	exon	3958747	3958836	.	+	.	transcript_id "Ledus.S3G051200.t1"; gene_id "Ledus.S3G051200"
Ledus.S3	AUGUSTUS	intron	3958837	3958970	.	+	.	transcript_id "Ledus.S3G051200.t1"; gene_id "Ledus.S3G051200"
Ledus.S3	AUGUSTUS	CDS	3958971	3959114	0.93	+	0	transcript_id "Ledus.S3G051200.t1"; gene_id "Ledus.S3G051200"
Ledus.S3	AUGUSTUS	exon	3958971	3959114	.	+	.	transcript_id "Ledus.S3G051200.t1"; gene_id "Ledus.S3G051200"
Ledus.S3	AUGUSTUS	stop_codon	3959115	3959117	.	+	0	transcript_id "Ledus.S3G051200.t1"; gene_id "Ledus.S3G051200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5153.t1 is derived from g2592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21984045	21986603	.	-	.	Ledus.S1G257400
Ledus.S1	AUGUSTUS	transcript	21984045	21986603	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	stop_codon	21984042	21984044	.	-	0	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	CDS	21984045	21984176	1	-	0	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	exon	21984045	21984176	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	intron	21984177	21984286	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	CDS	21984287	21984331	0.86	-	0	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	exon	21984287	21984331	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	intron	21984332	21984482	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	CDS	21984483	21984617	1	-	0	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	exon	21984483	21984617	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	intron	21984618	21984776	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	CDS	21984777	21985528	1	-	2	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	exon	21984777	21985528	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	intron	21985529	21985658	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	CDS	21985659	21985764	1	-	0	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	exon	21985659	21985764	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	intron	21985765	21985943	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	CDS	21985944	21986060	1	-	0	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	exon	21985944	21986060	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	intron	21986061	21986186	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	CDS	21986187	21986603	0.75	-	0	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	exon	21986187	21986603	.	-	.	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
Ledus.S1	AUGUSTUS	start_codon	21986601	21986603	.	-	0	transcript_id "Ledus.S1G257400.t1"; gene_id "Ledus.S1G257400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9119.t1 is derived from g10149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4679197	4680609	.	-	.	Ledus.S3G059600
Ledus.S3	AUGUSTUS	transcript	4679197	4680609	.	-	.	transcript_id "Ledus.S3G059600.t1"; gene_id "Ledus.S3G059600"
Ledus.S3	AUGUSTUS	stop_codon	4679194	4679196	.	-	0	transcript_id "Ledus.S3G059600.t1"; gene_id "Ledus.S3G059600"
Ledus.S3	AUGUSTUS	CDS	4679197	4680609	1	-	0	transcript_id "Ledus.S3G059600.t1"; gene_id "Ledus.S3G059600"
Ledus.S3	AUGUSTUS	exon	4679197	4680609	.	-	.	transcript_id "Ledus.S3G059600.t1"; gene_id "Ledus.S3G059600"
Ledus.S3	AUGUSTUS	start_codon	4680607	4680609	.	-	0	transcript_id "Ledus.S3G059600.t1"; gene_id "Ledus.S3G059600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11341.t1 is derived from g4959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3685430	3688534	.	+	.	Ledus.S4G049700
Ledus.S4	AUGUSTUS	transcript	3685430	3688534	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	start_codon	3685430	3685432	.	+	0	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	CDS	3685430	3685516	0.88	+	0	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	exon	3685430	3685516	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	intron	3685517	3685638	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	CDS	3685639	3685671	0.95	+	0	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	exon	3685639	3685671	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	intron	3685672	3685808	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	CDS	3685809	3686027	0.94	+	0	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	exon	3685809	3686027	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	intron	3686028	3686589	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	CDS	3686590	3686910	0.99	+	0	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	exon	3686590	3686910	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	intron	3686911	3687168	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	CDS	3687169	3687330	1	+	0	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	exon	3687169	3687330	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	intron	3687331	3687550	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	CDS	3687551	3687625	0.96	+	0	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	exon	3687551	3687625	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	intron	3687626	3687741	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	CDS	3687742	3687851	1	+	0	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	exon	3687742	3687851	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	intron	3687852	3687935	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	CDS	3687936	3688008	1	+	1	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	exon	3687936	3688008	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	intron	3688009	3688096	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	CDS	3688097	3688239	0.48	+	0	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	exon	3688097	3688239	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	intron	3688240	3688318	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	CDS	3688319	3688353	0.51	+	1	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	exon	3688319	3688353	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	intron	3688354	3688502	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	CDS	3688503	3688534	0.51	+	2	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	exon	3688503	3688534	.	+	.	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
Ledus.S4	AUGUSTUS	stop_codon	3688535	3688537	.	+	0	transcript_id "Ledus.S4G049700.t1"; gene_id "Ledus.S4G049700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1884.t1 is derived from g8747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13183174	13184253	.	+	.	Ledus.S2G176600
Ledus.S2	AUGUSTUS	transcript	13183174	13184253	.	+	.	transcript_id "Ledus.S2G176600.t1"; gene_id "Ledus.S2G176600"
Ledus.S2	AUGUSTUS	start_codon	13183174	13183176	.	+	0	transcript_id "Ledus.S2G176600.t1"; gene_id "Ledus.S2G176600"
Ledus.S2	AUGUSTUS	CDS	13183174	13184253	0.85	+	0	transcript_id "Ledus.S2G176600.t1"; gene_id "Ledus.S2G176600"
Ledus.S2	AUGUSTUS	exon	13183174	13184253	.	+	.	transcript_id "Ledus.S2G176600.t1"; gene_id "Ledus.S2G176600"
Ledus.S2	AUGUSTUS	stop_codon	13184254	13184256	.	+	0	transcript_id "Ledus.S2G176600.t1"; gene_id "Ledus.S2G176600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8538.t1 is derived from g9568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	85929	88256	.	-	.	Ledus.S3G001500
Ledus.S3	AUGUSTUS	transcript	85929	88256	.	-	.	transcript_id "Ledus.S3G001500.t1"; gene_id "Ledus.S3G001500"
Ledus.S3	AUGUSTUS	stop_codon	85926	85928	.	-	0	transcript_id "Ledus.S3G001500.t1"; gene_id "Ledus.S3G001500"
Ledus.S3	AUGUSTUS	CDS	85929	88256	0.98	-	0	transcript_id "Ledus.S3G001500.t1"; gene_id "Ledus.S3G001500"
Ledus.S3	AUGUSTUS	exon	85929	88256	.	-	.	transcript_id "Ledus.S3G001500.t1"; gene_id "Ledus.S3G001500"
Ledus.S3	AUGUSTUS	start_codon	88254	88256	.	-	0	transcript_id "Ledus.S3G001500.t1"; gene_id "Ledus.S3G001500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4987.t1 is derived from g2425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21001814	21002191	.	+	.	Ledus.S1G240800
Ledus.S1	AUGUSTUS	transcript	21001814	21002191	.	+	.	transcript_id "Ledus.S1G240800.t1"; gene_id "Ledus.S1G240800"
Ledus.S1	AUGUSTUS	start_codon	21001814	21001816	.	+	0	transcript_id "Ledus.S1G240800.t1"; gene_id "Ledus.S1G240800"
Ledus.S1	AUGUSTUS	CDS	21001814	21001947	0.6	+	0	transcript_id "Ledus.S1G240800.t1"; gene_id "Ledus.S1G240800"
Ledus.S1	AUGUSTUS	exon	21001814	21001947	.	+	.	transcript_id "Ledus.S1G240800.t1"; gene_id "Ledus.S1G240800"
Ledus.S1	AUGUSTUS	intron	21001948	21002015	.	+	.	transcript_id "Ledus.S1G240800.t1"; gene_id "Ledus.S1G240800"
Ledus.S1	AUGUSTUS	CDS	21002016	21002068	0.75	+	1	transcript_id "Ledus.S1G240800.t1"; gene_id "Ledus.S1G240800"
Ledus.S1	AUGUSTUS	exon	21002016	21002068	.	+	.	transcript_id "Ledus.S1G240800.t1"; gene_id "Ledus.S1G240800"
Ledus.S1	AUGUSTUS	intron	21002069	21002162	.	+	.	transcript_id "Ledus.S1G240800.t1"; gene_id "Ledus.S1G240800"
Ledus.S1	AUGUSTUS	CDS	21002163	21002191	1	+	2	transcript_id "Ledus.S1G240800.t1"; gene_id "Ledus.S1G240800"
Ledus.S1	AUGUSTUS	exon	21002163	21002191	.	+	.	transcript_id "Ledus.S1G240800.t1"; gene_id "Ledus.S1G240800"
Ledus.S1	AUGUSTUS	stop_codon	21002192	21002194	.	+	0	transcript_id "Ledus.S1G240800.t1"; gene_id "Ledus.S1G240800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1688.t1 is derived from g8549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11851043	11851762	.	+	.	Ledus.S2G157000
Ledus.S2	AUGUSTUS	transcript	11851043	11851762	.	+	.	transcript_id "Ledus.S2G157000.t1"; gene_id "Ledus.S2G157000"
Ledus.S2	AUGUSTUS	start_codon	11851043	11851045	.	+	0	transcript_id "Ledus.S2G157000.t1"; gene_id "Ledus.S2G157000"
Ledus.S2	AUGUSTUS	CDS	11851043	11851762	1	+	0	transcript_id "Ledus.S2G157000.t1"; gene_id "Ledus.S2G157000"
Ledus.S2	AUGUSTUS	exon	11851043	11851762	.	+	.	transcript_id "Ledus.S2G157000.t1"; gene_id "Ledus.S2G157000"
Ledus.S2	AUGUSTUS	stop_codon	11851763	11851765	.	+	0	transcript_id "Ledus.S2G157000.t1"; gene_id "Ledus.S2G157000"
# This transcript jg5400.t2 is derived from g2839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5401.t1 is derived from g2840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24001003	24001575	.	+	.	Ledus.S1G282200
Ledus.S1	AUGUSTUS	transcript	24001003	24001575	.	+	.	transcript_id "Ledus.S1G282200.t1"; gene_id "Ledus.S1G282200"
Ledus.S1	AUGUSTUS	start_codon	24001003	24001005	.	+	0	transcript_id "Ledus.S1G282200.t1"; gene_id "Ledus.S1G282200"
Ledus.S1	AUGUSTUS	CDS	24001003	24001575	0.59	+	0	transcript_id "Ledus.S1G282200.t1"; gene_id "Ledus.S1G282200"
Ledus.S1	AUGUSTUS	exon	24001003	24001575	.	+	.	transcript_id "Ledus.S1G282200.t1"; gene_id "Ledus.S1G282200"
Ledus.S1	AUGUSTUS	stop_codon	24001576	24001578	.	+	0	transcript_id "Ledus.S1G282200.t1"; gene_id "Ledus.S1G282200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12186.t1 is derived from g5805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10203325	10204079	.	+	.	Ledus.S4G134200
Ledus.S4	AUGUSTUS	transcript	10203325	10204079	.	+	.	transcript_id "Ledus.S4G134200.t1"; gene_id "Ledus.S4G134200"
Ledus.S4	AUGUSTUS	start_codon	10203325	10203327	.	+	0	transcript_id "Ledus.S4G134200.t1"; gene_id "Ledus.S4G134200"
Ledus.S4	AUGUSTUS	CDS	10203325	10203521	0.4	+	0	transcript_id "Ledus.S4G134200.t1"; gene_id "Ledus.S4G134200"
Ledus.S4	AUGUSTUS	exon	10203325	10203521	.	+	.	transcript_id "Ledus.S4G134200.t1"; gene_id "Ledus.S4G134200"
Ledus.S4	AUGUSTUS	intron	10203522	10203585	.	+	.	transcript_id "Ledus.S4G134200.t1"; gene_id "Ledus.S4G134200"
Ledus.S4	AUGUSTUS	CDS	10203586	10203848	0.54	+	1	transcript_id "Ledus.S4G134200.t1"; gene_id "Ledus.S4G134200"
Ledus.S4	AUGUSTUS	exon	10203586	10203848	.	+	.	transcript_id "Ledus.S4G134200.t1"; gene_id "Ledus.S4G134200"
Ledus.S4	AUGUSTUS	intron	10203849	10203993	.	+	.	transcript_id "Ledus.S4G134200.t1"; gene_id "Ledus.S4G134200"
Ledus.S4	AUGUSTUS	CDS	10203994	10204079	0.76	+	2	transcript_id "Ledus.S4G134200.t1"; gene_id "Ledus.S4G134200"
Ledus.S4	AUGUSTUS	exon	10203994	10204079	.	+	.	transcript_id "Ledus.S4G134200.t1"; gene_id "Ledus.S4G134200"
Ledus.S4	AUGUSTUS	stop_codon	10204080	10204082	.	+	0	transcript_id "Ledus.S4G134200.t1"; gene_id "Ledus.S4G134200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4321.t1 is derived from g1757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16249386	16252452	.	+	.	Ledus.S1G174200
Ledus.S1	AUGUSTUS	transcript	16249386	16252452	.	+	.	transcript_id "Ledus.S1G174200.t1"; gene_id "Ledus.S1G174200"
Ledus.S1	AUGUSTUS	start_codon	16249386	16249388	.	+	0	transcript_id "Ledus.S1G174200.t1"; gene_id "Ledus.S1G174200"
Ledus.S1	AUGUSTUS	CDS	16249386	16249842	0.88	+	0	transcript_id "Ledus.S1G174200.t1"; gene_id "Ledus.S1G174200"
Ledus.S1	AUGUSTUS	exon	16249386	16249842	.	+	.	transcript_id "Ledus.S1G174200.t1"; gene_id "Ledus.S1G174200"
Ledus.S1	AUGUSTUS	intron	16249843	16250014	.	+	.	transcript_id "Ledus.S1G174200.t1"; gene_id "Ledus.S1G174200"
Ledus.S1	AUGUSTUS	CDS	16250015	16252452	0.99	+	2	transcript_id "Ledus.S1G174200.t1"; gene_id "Ledus.S1G174200"
Ledus.S1	AUGUSTUS	exon	16250015	16252452	.	+	.	transcript_id "Ledus.S1G174200.t1"; gene_id "Ledus.S1G174200"
Ledus.S1	AUGUSTUS	stop_codon	16252453	16252455	.	+	0	transcript_id "Ledus.S1G174200.t1"; gene_id "Ledus.S1G174200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12022.t1 is derived from g5641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8792531	8793651	.	+	.	Ledus.S4G117800
Ledus.S4	AUGUSTUS	transcript	8792531	8793651	.	+	.	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	start_codon	8792531	8792533	.	+	0	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	CDS	8792531	8792631	0.7	+	0	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	exon	8792531	8792631	.	+	.	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	intron	8792632	8792729	.	+	.	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	CDS	8792730	8792976	0.76	+	1	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	exon	8792730	8792976	.	+	.	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	intron	8792977	8793102	.	+	.	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	CDS	8793103	8793225	0.98	+	0	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	exon	8793103	8793225	.	+	.	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	intron	8793226	8793356	.	+	.	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	CDS	8793357	8793448	0.98	+	0	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	exon	8793357	8793448	.	+	.	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	intron	8793449	8793590	.	+	.	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	CDS	8793591	8793651	1	+	1	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	exon	8793591	8793651	.	+	.	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
Ledus.S4	AUGUSTUS	stop_codon	8793652	8793654	.	+	0	transcript_id "Ledus.S4G117800.t1"; gene_id "Ledus.S4G117800"
# This transcript jg2799.t2 is derived from g233.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2800.t1 is derived from g234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3845200	3846515	.	+	.	Ledus.S1G022100
Ledus.S1	AUGUSTUS	transcript	3845200	3846515	.	+	.	transcript_id "Ledus.S1G022100.t1"; gene_id "Ledus.S1G022100"
Ledus.S1	AUGUSTUS	start_codon	3845200	3845202	.	+	0	transcript_id "Ledus.S1G022100.t1"; gene_id "Ledus.S1G022100"
Ledus.S1	AUGUSTUS	CDS	3845200	3845958	0.93	+	0	transcript_id "Ledus.S1G022100.t1"; gene_id "Ledus.S1G022100"
Ledus.S1	AUGUSTUS	exon	3845200	3845958	.	+	.	transcript_id "Ledus.S1G022100.t1"; gene_id "Ledus.S1G022100"
Ledus.S1	AUGUSTUS	intron	3845959	3846047	.	+	.	transcript_id "Ledus.S1G022100.t1"; gene_id "Ledus.S1G022100"
Ledus.S1	AUGUSTUS	CDS	3846048	3846299	1	+	0	transcript_id "Ledus.S1G022100.t1"; gene_id "Ledus.S1G022100"
Ledus.S1	AUGUSTUS	exon	3846048	3846299	.	+	.	transcript_id "Ledus.S1G022100.t1"; gene_id "Ledus.S1G022100"
Ledus.S1	AUGUSTUS	intron	3846300	3846386	.	+	.	transcript_id "Ledus.S1G022100.t1"; gene_id "Ledus.S1G022100"
Ledus.S1	AUGUSTUS	CDS	3846387	3846515	0.84	+	0	transcript_id "Ledus.S1G022100.t1"; gene_id "Ledus.S1G022100"
Ledus.S1	AUGUSTUS	exon	3846387	3846515	.	+	.	transcript_id "Ledus.S1G022100.t1"; gene_id "Ledus.S1G022100"
Ledus.S1	AUGUSTUS	stop_codon	3846516	3846518	.	+	0	transcript_id "Ledus.S1G022100.t1"; gene_id "Ledus.S1G022100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12612.t1 is derived from g6234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13228273	13231288	.	-	.	Ledus.S4G176800
Ledus.S4	AUGUSTUS	transcript	13228273	13231288	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	stop_codon	13228270	13228272	.	-	0	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	CDS	13228273	13228302	1	-	0	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	exon	13228273	13228302	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	intron	13228303	13228397	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	CDS	13228398	13228529	1	-	0	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	exon	13228398	13228529	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	intron	13228530	13228603	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	CDS	13228604	13228774	0.63	-	0	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	exon	13228604	13228774	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	intron	13228775	13228885	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	CDS	13228886	13228949	0.93	-	1	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	exon	13228886	13228949	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	intron	13228950	13229033	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	CDS	13229034	13229182	1	-	0	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	exon	13229034	13229182	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	intron	13229183	13229301	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	CDS	13229302	13229355	1	-	0	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	exon	13229302	13229355	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	intron	13229356	13229446	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	CDS	13229447	13229617	1	-	0	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	exon	13229447	13229617	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	intron	13229618	13229760	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	CDS	13229761	13230039	1	-	0	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	exon	13229761	13230039	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	intron	13230040	13230134	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	CDS	13230135	13230360	1	-	1	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	exon	13230135	13230360	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	intron	13230361	13230872	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	CDS	13230873	13231288	0.85	-	0	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	exon	13230873	13231288	.	-	.	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
Ledus.S4	AUGUSTUS	start_codon	13231286	13231288	.	-	0	transcript_id "Ledus.S4G176800.t1"; gene_id "Ledus.S4G176800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12343.t1 is derived from g5964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11325102	11326106	.	-	.	Ledus.S4G149900
Ledus.S4	AUGUSTUS	transcript	11325102	11326106	.	-	.	transcript_id "Ledus.S4G149900.t1"; gene_id "Ledus.S4G149900"
Ledus.S4	AUGUSTUS	stop_codon	11325099	11325101	.	-	0	transcript_id "Ledus.S4G149900.t1"; gene_id "Ledus.S4G149900"
Ledus.S4	AUGUSTUS	CDS	11325102	11326106	0.65	-	0	transcript_id "Ledus.S4G149900.t1"; gene_id "Ledus.S4G149900"
Ledus.S4	AUGUSTUS	exon	11325102	11326106	.	-	.	transcript_id "Ledus.S4G149900.t1"; gene_id "Ledus.S4G149900"
Ledus.S4	AUGUSTUS	start_codon	11326104	11326106	.	-	0	transcript_id "Ledus.S4G149900.t1"; gene_id "Ledus.S4G149900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3337.t1 is derived from g772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7556292	7557664	.	-	.	Ledus.S1G075800
Ledus.S1	AUGUSTUS	transcript	7556292	7557664	.	-	.	transcript_id "Ledus.S1G075800.t1"; gene_id "Ledus.S1G075800"
Ledus.S1	AUGUSTUS	stop_codon	7556289	7556291	.	-	0	transcript_id "Ledus.S1G075800.t1"; gene_id "Ledus.S1G075800"
Ledus.S1	AUGUSTUS	CDS	7556292	7556538	0.94	-	1	transcript_id "Ledus.S1G075800.t1"; gene_id "Ledus.S1G075800"
Ledus.S1	AUGUSTUS	exon	7556292	7556538	.	-	.	transcript_id "Ledus.S1G075800.t1"; gene_id "Ledus.S1G075800"
Ledus.S1	AUGUSTUS	intron	7556539	7556687	.	-	.	transcript_id "Ledus.S1G075800.t1"; gene_id "Ledus.S1G075800"
Ledus.S1	AUGUSTUS	CDS	7556688	7557198	1	-	2	transcript_id "Ledus.S1G075800.t1"; gene_id "Ledus.S1G075800"
Ledus.S1	AUGUSTUS	exon	7556688	7557198	.	-	.	transcript_id "Ledus.S1G075800.t1"; gene_id "Ledus.S1G075800"
Ledus.S1	AUGUSTUS	intron	7557199	7557276	.	-	.	transcript_id "Ledus.S1G075800.t1"; gene_id "Ledus.S1G075800"
Ledus.S1	AUGUSTUS	CDS	7557277	7557664	0.77	-	0	transcript_id "Ledus.S1G075800.t1"; gene_id "Ledus.S1G075800"
Ledus.S1	AUGUSTUS	exon	7557277	7557664	.	-	.	transcript_id "Ledus.S1G075800.t1"; gene_id "Ledus.S1G075800"
Ledus.S1	AUGUSTUS	start_codon	7557662	7557664	.	-	0	transcript_id "Ledus.S1G075800.t1"; gene_id "Ledus.S1G075800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg338.t1 is derived from g7199.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1815481	1819387	.	-	.	Ledus.S2G022000
Ledus.S2	AUGUSTUS	transcript	1815481	1819387	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	stop_codon	1815478	1815480	.	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1815481	1815567	0.67	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1815481	1815567	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1815568	1815669	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1815670	1815767	0.85	-	2	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1815670	1815767	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1815768	1815873	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1815874	1815988	0.99	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1815874	1815988	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1815989	1816085	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1816086	1816133	1	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1816086	1816133	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1816134	1816352	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1816353	1816475	0.77	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1816353	1816475	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1816476	1816596	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1816597	1816691	0.7	-	2	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1816597	1816691	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1816692	1816802	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1816803	1816928	0.89	-	2	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1816803	1816928	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1816929	1817009	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1817010	1817116	1	-	1	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1817010	1817116	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1817117	1817255	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1817256	1817329	1	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1817256	1817329	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1817330	1817415	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1817416	1817577	1	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1817416	1817577	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1817578	1817669	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1817670	1817741	1	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1817670	1817741	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1817742	1817843	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1817844	1817910	0.96	-	1	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1817844	1817910	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1817911	1818010	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1818011	1818111	1	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1818011	1818111	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1818112	1818231	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1818232	1818294	0.99	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1818232	1818294	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1818295	1818455	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1818456	1818573	1	-	1	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1818456	1818573	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1818574	1818742	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1818743	1818806	1	-	2	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1818743	1818806	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1818807	1818888	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1818889	1819066	0.99	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1818889	1819066	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1819067	1819170	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1819171	1819254	1	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1819171	1819254	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	intron	1819255	1819384	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	CDS	1819385	1819387	0.9	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	exon	1819385	1819387	.	-	.	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
Ledus.S2	AUGUSTUS	start_codon	1819385	1819387	.	-	0	transcript_id "Ledus.S2G022000.t1"; gene_id "Ledus.S2G022000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13089.t1 is derived from g6899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5385046	5385270	.	-	.	Ledus.S6G015100
Ledus.S6	AUGUSTUS	transcript	5385046	5385270	.	-	.	transcript_id "Ledus.S6G015100.t1"; gene_id "Ledus.S6G015100"
Ledus.S6	AUGUSTUS	stop_codon	5385043	5385045	.	-	0	transcript_id "Ledus.S6G015100.t1"; gene_id "Ledus.S6G015100"
Ledus.S6	AUGUSTUS	CDS	5385046	5385270	0.95	-	0	transcript_id "Ledus.S6G015100.t1"; gene_id "Ledus.S6G015100"
Ledus.S6	AUGUSTUS	exon	5385046	5385270	.	-	.	transcript_id "Ledus.S6G015100.t1"; gene_id "Ledus.S6G015100"
Ledus.S6	AUGUSTUS	start_codon	5385268	5385270	.	-	0	transcript_id "Ledus.S6G015100.t1"; gene_id "Ledus.S6G015100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1722.t1 is derived from g8583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12136281	12137054	.	+	.	Ledus.S2G160400
Ledus.S2	AUGUSTUS	transcript	12136281	12137054	.	+	.	transcript_id "Ledus.S2G160400.t1"; gene_id "Ledus.S2G160400"
Ledus.S2	AUGUSTUS	start_codon	12136281	12136283	.	+	0	transcript_id "Ledus.S2G160400.t1"; gene_id "Ledus.S2G160400"
Ledus.S2	AUGUSTUS	CDS	12136281	12137054	0.99	+	0	transcript_id "Ledus.S2G160400.t1"; gene_id "Ledus.S2G160400"
Ledus.S2	AUGUSTUS	exon	12136281	12137054	.	+	.	transcript_id "Ledus.S2G160400.t1"; gene_id "Ledus.S2G160400"
Ledus.S2	AUGUSTUS	stop_codon	12137055	12137057	.	+	0	transcript_id "Ledus.S2G160400.t1"; gene_id "Ledus.S2G160400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5544.t1 is derived from g2983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25058902	25059489	.	+	.	Ledus.S1G296500
Ledus.S1	AUGUSTUS	transcript	25058902	25059489	.	+	.	transcript_id "Ledus.S1G296500.t1"; gene_id "Ledus.S1G296500"
Ledus.S1	AUGUSTUS	start_codon	25058902	25058904	.	+	0	transcript_id "Ledus.S1G296500.t1"; gene_id "Ledus.S1G296500"
Ledus.S1	AUGUSTUS	CDS	25058902	25059489	0.54	+	0	transcript_id "Ledus.S1G296500.t1"; gene_id "Ledus.S1G296500"
Ledus.S1	AUGUSTUS	exon	25058902	25059489	.	+	.	transcript_id "Ledus.S1G296500.t1"; gene_id "Ledus.S1G296500"
Ledus.S1	AUGUSTUS	stop_codon	25059490	25059492	.	+	0	transcript_id "Ledus.S1G296500.t1"; gene_id "Ledus.S1G296500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9428.t1 is derived from g10458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6694068	6696318	.	+	.	Ledus.S3G090500
Ledus.S3	AUGUSTUS	transcript	6694068	6696318	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	start_codon	6694068	6694070	.	+	0	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	CDS	6694068	6694415	0.91	+	0	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	exon	6694068	6694415	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	intron	6694416	6694551	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	CDS	6694552	6694872	0.91	+	0	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	exon	6694552	6694872	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	intron	6694873	6694961	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	CDS	6694962	6695078	1	+	0	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	exon	6694962	6695078	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	intron	6695079	6695167	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	CDS	6695168	6695253	1	+	0	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	exon	6695168	6695253	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	intron	6695254	6695438	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	CDS	6695439	6695673	1	+	1	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	exon	6695439	6695673	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	intron	6695674	6695849	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	CDS	6695850	6696011	0.66	+	0	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	exon	6695850	6696011	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	intron	6696012	6696294	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	CDS	6696295	6696318	0.34	+	0	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	exon	6696295	6696318	.	+	.	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
Ledus.S3	AUGUSTUS	stop_codon	6696319	6696321	.	+	0	transcript_id "Ledus.S3G090500.t1"; gene_id "Ledus.S3G090500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6169.t1 is derived from g3612.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29371177	29373657	.	+	.	Ledus.S1G359000
Ledus.S1	AUGUSTUS	transcript	29371190	29373657	.	+	.	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	start_codon	29371190	29371192	.	+	0	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	CDS	29371190	29371358	0.96	+	0	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	exon	29371190	29371358	.	+	.	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	intron	29371359	29371451	.	+	.	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	CDS	29371452	29371499	0.98	+	2	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	exon	29371452	29371499	.	+	.	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	intron	29371500	29371603	.	+	.	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	CDS	29371604	29372560	0.98	+	2	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	exon	29371604	29372560	.	+	.	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	intron	29372561	29372658	.	+	.	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	CDS	29372659	29372846	1	+	2	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	exon	29372659	29372846	.	+	.	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	intron	29372847	29373015	.	+	.	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	CDS	29373016	29373657	1	+	0	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	exon	29373016	29373657	.	+	.	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	stop_codon	29373658	29373660	.	+	0	transcript_id "Ledus.S1G359000.t1"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	transcript	29371177	29373657	.	+	.	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	start_codon	29371177	29371179	.	+	0	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	CDS	29371177	29371263	1	+	0	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	exon	29371177	29371263	.	+	.	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	intron	29371264	29371451	.	+	.	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	CDS	29371452	29371503	0.95	+	0	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	exon	29371452	29371503	.	+	.	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	intron	29371504	29371603	.	+	.	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	CDS	29371604	29372560	0.96	+	2	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	exon	29371604	29372560	.	+	.	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	intron	29372561	29372658	.	+	.	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	CDS	29372659	29372846	1	+	2	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	exon	29372659	29372846	.	+	.	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	intron	29372847	29373015	.	+	.	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	CDS	29373016	29373657	1	+	0	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	exon	29373016	29373657	.	+	.	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
Ledus.S1	AUGUSTUS	stop_codon	29373658	29373660	.	+	0	transcript_id "Ledus.S1G359000.t2"; gene_id "Ledus.S1G359000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4408.t1 is derived from g1844.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16933467	16935690	.	+	.	Ledus.S1G182900
Ledus.S1	AUGUSTUS	transcript	16933467	16935690	.	+	.	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	start_codon	16933467	16933469	.	+	0	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	CDS	16933467	16933536	0.94	+	0	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	exon	16933467	16933536	.	+	.	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	intron	16933537	16933634	.	+	.	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	CDS	16933635	16933757	0.7	+	2	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	exon	16933635	16933757	.	+	.	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	intron	16933758	16934051	.	+	.	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	CDS	16934052	16934269	0.99	+	2	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	exon	16934052	16934269	.	+	.	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	intron	16934270	16934577	.	+	.	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	CDS	16934578	16934974	0.94	+	0	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	exon	16934578	16934974	.	+	.	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	intron	16934975	16935367	.	+	.	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	CDS	16935368	16935690	1	+	2	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	exon	16935368	16935690	.	+	.	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	stop_codon	16935691	16935693	.	+	0	transcript_id "Ledus.S1G182900.t1"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	transcript	16933467	16935690	.	+	.	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	start_codon	16933467	16933469	.	+	0	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	CDS	16933467	16933536	0.93	+	0	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	exon	16933467	16933536	.	+	.	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	intron	16933537	16933634	.	+	.	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	CDS	16933635	16933757	0.72	+	2	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	exon	16933635	16933757	.	+	.	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	intron	16933758	16934051	.	+	.	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	CDS	16934052	16934269	0.98	+	2	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	exon	16934052	16934269	.	+	.	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	intron	16934270	16934577	.	+	.	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	CDS	16934578	16934974	0.92	+	0	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	exon	16934578	16934974	.	+	.	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	intron	16934975	16935373	.	+	.	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	CDS	16935374	16935690	1	+	2	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	exon	16935374	16935690	.	+	.	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
Ledus.S1	AUGUSTUS	stop_codon	16935691	16935693	.	+	0	transcript_id "Ledus.S1G182900.t2"; gene_id "Ledus.S1G182900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9173.t1 is derived from g10203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5243382	5243945	.	+	.	Ledus.S3G065000
Ledus.S3	AUGUSTUS	transcript	5243382	5243945	.	+	.	transcript_id "Ledus.S3G065000.t1"; gene_id "Ledus.S3G065000"
Ledus.S3	AUGUSTUS	start_codon	5243382	5243384	.	+	0	transcript_id "Ledus.S3G065000.t1"; gene_id "Ledus.S3G065000"
Ledus.S3	AUGUSTUS	CDS	5243382	5243945	1	+	0	transcript_id "Ledus.S3G065000.t1"; gene_id "Ledus.S3G065000"
Ledus.S3	AUGUSTUS	exon	5243382	5243945	.	+	.	transcript_id "Ledus.S3G065000.t1"; gene_id "Ledus.S3G065000"
Ledus.S3	AUGUSTUS	stop_codon	5243946	5243948	.	+	0	transcript_id "Ledus.S3G065000.t1"; gene_id "Ledus.S3G065000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10219.t1 is derived from g11249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13641779	13642312	.	-	.	Ledus.S3G169600
Ledus.S3	AUGUSTUS	transcript	13641779	13642312	.	-	.	transcript_id "Ledus.S3G169600.t1"; gene_id "Ledus.S3G169600"
Ledus.S3	AUGUSTUS	stop_codon	13641776	13641778	.	-	0	transcript_id "Ledus.S3G169600.t1"; gene_id "Ledus.S3G169600"
Ledus.S3	AUGUSTUS	CDS	13641779	13641895	0.98	-	0	transcript_id "Ledus.S3G169600.t1"; gene_id "Ledus.S3G169600"
Ledus.S3	AUGUSTUS	exon	13641779	13641895	.	-	.	transcript_id "Ledus.S3G169600.t1"; gene_id "Ledus.S3G169600"
Ledus.S3	AUGUSTUS	intron	13641896	13641991	.	-	.	transcript_id "Ledus.S3G169600.t1"; gene_id "Ledus.S3G169600"
Ledus.S3	AUGUSTUS	CDS	13641992	13642125	1	-	2	transcript_id "Ledus.S3G169600.t1"; gene_id "Ledus.S3G169600"
Ledus.S3	AUGUSTUS	exon	13641992	13642125	.	-	.	transcript_id "Ledus.S3G169600.t1"; gene_id "Ledus.S3G169600"
Ledus.S3	AUGUSTUS	intron	13642126	13642254	.	-	.	transcript_id "Ledus.S3G169600.t1"; gene_id "Ledus.S3G169600"
Ledus.S3	AUGUSTUS	CDS	13642255	13642312	0.9	-	0	transcript_id "Ledus.S3G169600.t1"; gene_id "Ledus.S3G169600"
Ledus.S3	AUGUSTUS	exon	13642255	13642312	.	-	.	transcript_id "Ledus.S3G169600.t1"; gene_id "Ledus.S3G169600"
Ledus.S3	AUGUSTUS	start_codon	13642310	13642312	.	-	0	transcript_id "Ledus.S3G169600.t1"; gene_id "Ledus.S3G169600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3970.t1 is derived from g1406.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13816308	13817116	.	-	.	Ledus.S1G139100
Ledus.S1	AUGUSTUS	transcript	13816308	13817116	.	-	.	transcript_id "Ledus.S1G139100.t1"; gene_id "Ledus.S1G139100"
Ledus.S1	AUGUSTUS	stop_codon	13816305	13816307	.	-	0	transcript_id "Ledus.S1G139100.t1"; gene_id "Ledus.S1G139100"
Ledus.S1	AUGUSTUS	CDS	13816308	13816746	0.32	-	1	transcript_id "Ledus.S1G139100.t1"; gene_id "Ledus.S1G139100"
Ledus.S1	AUGUSTUS	exon	13816308	13816746	.	-	.	transcript_id "Ledus.S1G139100.t1"; gene_id "Ledus.S1G139100"
Ledus.S1	AUGUSTUS	intron	13816747	13816864	.	-	.	transcript_id "Ledus.S1G139100.t1"; gene_id "Ledus.S1G139100"
Ledus.S1	AUGUSTUS	CDS	13816865	13816959	0.81	-	0	transcript_id "Ledus.S1G139100.t1"; gene_id "Ledus.S1G139100"
Ledus.S1	AUGUSTUS	exon	13816865	13816959	.	-	.	transcript_id "Ledus.S1G139100.t1"; gene_id "Ledus.S1G139100"
Ledus.S1	AUGUSTUS	intron	13816960	13817047	.	-	.	transcript_id "Ledus.S1G139100.t1"; gene_id "Ledus.S1G139100"
Ledus.S1	AUGUSTUS	CDS	13817048	13817116	0.37	-	0	transcript_id "Ledus.S1G139100.t1"; gene_id "Ledus.S1G139100"
Ledus.S1	AUGUSTUS	exon	13817048	13817116	.	-	.	transcript_id "Ledus.S1G139100.t1"; gene_id "Ledus.S1G139100"
Ledus.S1	AUGUSTUS	start_codon	13817114	13817116	.	-	0	transcript_id "Ledus.S1G139100.t1"; gene_id "Ledus.S1G139100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8184.t1 is derived from g12855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9713914	9715334	.	+	.	Ledus.S5G096200
Ledus.S5	AUGUSTUS	transcript	9713914	9715334	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	start_codon	9713914	9713916	.	+	0	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	CDS	9713914	9714025	0.83	+	0	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	exon	9713914	9714025	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	intron	9714026	9714140	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	CDS	9714141	9714199	0.78	+	2	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	exon	9714141	9714199	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	intron	9714200	9714329	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	CDS	9714330	9714401	1	+	0	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	exon	9714330	9714401	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	intron	9714402	9714566	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	CDS	9714567	9714667	1	+	0	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	exon	9714567	9714667	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	intron	9714668	9714760	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	CDS	9714761	9714853	1	+	1	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	exon	9714761	9714853	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	intron	9714854	9714949	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	CDS	9714950	9715083	0.93	+	1	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	exon	9714950	9715083	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	intron	9715084	9715203	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	CDS	9715204	9715334	0.71	+	2	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	exon	9715204	9715334	.	+	.	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
Ledus.S5	AUGUSTUS	stop_codon	9715335	9715337	.	+	0	transcript_id "Ledus.S5G096200.t1"; gene_id "Ledus.S5G096200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10248.t1 is derived from g11278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13806622	13807836	.	+	.	Ledus.S3G172500
Ledus.S3	AUGUSTUS	transcript	13806622	13807836	.	+	.	transcript_id "Ledus.S3G172500.t1"; gene_id "Ledus.S3G172500"
Ledus.S3	AUGUSTUS	start_codon	13806622	13806624	.	+	0	transcript_id "Ledus.S3G172500.t1"; gene_id "Ledus.S3G172500"
Ledus.S3	AUGUSTUS	CDS	13806622	13807119	0.99	+	0	transcript_id "Ledus.S3G172500.t1"; gene_id "Ledus.S3G172500"
Ledus.S3	AUGUSTUS	exon	13806622	13807119	.	+	.	transcript_id "Ledus.S3G172500.t1"; gene_id "Ledus.S3G172500"
Ledus.S3	AUGUSTUS	intron	13807120	13807212	.	+	.	transcript_id "Ledus.S3G172500.t1"; gene_id "Ledus.S3G172500"
Ledus.S3	AUGUSTUS	CDS	13807213	13807365	1	+	0	transcript_id "Ledus.S3G172500.t1"; gene_id "Ledus.S3G172500"
Ledus.S3	AUGUSTUS	exon	13807213	13807365	.	+	.	transcript_id "Ledus.S3G172500.t1"; gene_id "Ledus.S3G172500"
Ledus.S3	AUGUSTUS	intron	13807366	13807449	.	+	.	transcript_id "Ledus.S3G172500.t1"; gene_id "Ledus.S3G172500"
Ledus.S3	AUGUSTUS	CDS	13807450	13807836	0.99	+	0	transcript_id "Ledus.S3G172500.t1"; gene_id "Ledus.S3G172500"
Ledus.S3	AUGUSTUS	exon	13807450	13807836	.	+	.	transcript_id "Ledus.S3G172500.t1"; gene_id "Ledus.S3G172500"
Ledus.S3	AUGUSTUS	stop_codon	13807837	13807839	.	+	0	transcript_id "Ledus.S3G172500.t1"; gene_id "Ledus.S3G172500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4151.t1 is derived from g1587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14970753	14973674	.	+	.	Ledus.S1G157200
Ledus.S1	AUGUSTUS	transcript	14970753	14973674	.	+	.	transcript_id "Ledus.S1G157200.t1"; gene_id "Ledus.S1G157200"
Ledus.S1	AUGUSTUS	start_codon	14970753	14970755	.	+	0	transcript_id "Ledus.S1G157200.t1"; gene_id "Ledus.S1G157200"
Ledus.S1	AUGUSTUS	CDS	14970753	14970894	0.37	+	0	transcript_id "Ledus.S1G157200.t1"; gene_id "Ledus.S1G157200"
Ledus.S1	AUGUSTUS	exon	14970753	14970894	.	+	.	transcript_id "Ledus.S1G157200.t1"; gene_id "Ledus.S1G157200"
Ledus.S1	AUGUSTUS	intron	14970895	14971093	.	+	.	transcript_id "Ledus.S1G157200.t1"; gene_id "Ledus.S1G157200"
Ledus.S1	AUGUSTUS	CDS	14971094	14971224	0.96	+	2	transcript_id "Ledus.S1G157200.t1"; gene_id "Ledus.S1G157200"
Ledus.S1	AUGUSTUS	exon	14971094	14971224	.	+	.	transcript_id "Ledus.S1G157200.t1"; gene_id "Ledus.S1G157200"
Ledus.S1	AUGUSTUS	intron	14971225	14971436	.	+	.	transcript_id "Ledus.S1G157200.t1"; gene_id "Ledus.S1G157200"
Ledus.S1	AUGUSTUS	CDS	14971437	14973674	0.99	+	0	transcript_id "Ledus.S1G157200.t1"; gene_id "Ledus.S1G157200"
Ledus.S1	AUGUSTUS	exon	14971437	14973674	.	+	.	transcript_id "Ledus.S1G157200.t1"; gene_id "Ledus.S1G157200"
Ledus.S1	AUGUSTUS	stop_codon	14973675	14973677	.	+	0	transcript_id "Ledus.S1G157200.t1"; gene_id "Ledus.S1G157200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6410.t1 is derived from g3853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31118692	31120091	.	-	.	Ledus.S1G383100
Ledus.S1	AUGUSTUS	transcript	31118692	31120091	.	-	.	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	stop_codon	31118689	31118691	.	-	0	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	CDS	31118692	31118779	0.98	-	1	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	exon	31118692	31118779	.	-	.	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	intron	31118780	31118856	.	-	.	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	CDS	31118857	31119046	1	-	2	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	exon	31118857	31119046	.	-	.	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	intron	31119047	31119133	.	-	.	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	CDS	31119134	31119287	1	-	0	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	exon	31119134	31119287	.	-	.	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	intron	31119288	31119390	.	-	.	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	CDS	31119391	31119618	0.98	-	0	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	exon	31119391	31119618	.	-	.	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	intron	31119619	31119727	.	-	.	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	CDS	31119728	31119891	0.99	-	2	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	exon	31119728	31119891	.	-	.	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	intron	31119892	31119973	.	-	.	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	CDS	31119974	31120091	0.56	-	0	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	exon	31119974	31120091	.	-	.	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
Ledus.S1	AUGUSTUS	start_codon	31120089	31120091	.	-	0	transcript_id "Ledus.S1G383100.t1"; gene_id "Ledus.S1G383100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10299.t1 is derived from g11329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14125423	14126769	.	+	.	Ledus.S3G177600
Ledus.S3	AUGUSTUS	transcript	14125423	14126769	.	+	.	transcript_id "Ledus.S3G177600.t1"; gene_id "Ledus.S3G177600"
Ledus.S3	AUGUSTUS	start_codon	14125423	14125425	.	+	0	transcript_id "Ledus.S3G177600.t1"; gene_id "Ledus.S3G177600"
Ledus.S3	AUGUSTUS	CDS	14125423	14126769	0.54	+	0	transcript_id "Ledus.S3G177600.t1"; gene_id "Ledus.S3G177600"
Ledus.S3	AUGUSTUS	exon	14125423	14126769	.	+	.	transcript_id "Ledus.S3G177600.t1"; gene_id "Ledus.S3G177600"
Ledus.S3	AUGUSTUS	stop_codon	14126770	14126772	.	+	0	transcript_id "Ledus.S3G177600.t1"; gene_id "Ledus.S3G177600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6297.t1 is derived from g3740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30242857	30244940	.	+	.	Ledus.S1G371800
Ledus.S1	AUGUSTUS	transcript	30242857	30244940	.	+	.	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	start_codon	30242857	30242859	.	+	0	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	CDS	30242857	30243900	0.91	+	0	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	exon	30242857	30243900	.	+	.	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	intron	30243901	30244002	.	+	.	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	CDS	30244003	30244081	1	+	0	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	exon	30244003	30244081	.	+	.	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	intron	30244082	30244154	.	+	.	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	CDS	30244155	30244288	1	+	2	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	exon	30244155	30244288	.	+	.	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	intron	30244289	30244387	.	+	.	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	CDS	30244388	30244633	1	+	0	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	exon	30244388	30244633	.	+	.	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	intron	30244634	30244715	.	+	.	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	CDS	30244716	30244940	0.95	+	0	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	exon	30244716	30244940	.	+	.	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
Ledus.S1	AUGUSTUS	stop_codon	30244941	30244943	.	+	0	transcript_id "Ledus.S1G371800.t1"; gene_id "Ledus.S1G371800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8695.t1 is derived from g9725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1437385	1440987	.	-	.	Ledus.S3G017200
Ledus.S3	AUGUSTUS	transcript	1437385	1440987	.	-	.	transcript_id "Ledus.S3G017200.t1"; gene_id "Ledus.S3G017200"
Ledus.S3	AUGUSTUS	stop_codon	1437382	1437384	.	-	0	transcript_id "Ledus.S3G017200.t1"; gene_id "Ledus.S3G017200"
Ledus.S3	AUGUSTUS	CDS	1437385	1440987	1	-	0	transcript_id "Ledus.S3G017200.t1"; gene_id "Ledus.S3G017200"
Ledus.S3	AUGUSTUS	exon	1437385	1440987	.	-	.	transcript_id "Ledus.S3G017200.t1"; gene_id "Ledus.S3G017200"
Ledus.S3	AUGUSTUS	start_codon	1440985	1440987	.	-	0	transcript_id "Ledus.S3G017200.t1"; gene_id "Ledus.S3G017200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10721.t1 is derived from g11751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17367783	17369858	.	-	.	Ledus.S3G219800
Ledus.S3	AUGUSTUS	transcript	17367783	17369858	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	stop_codon	17367780	17367782	.	-	0	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	CDS	17367783	17367896	1	-	0	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	exon	17367783	17367896	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	intron	17367897	17367987	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	CDS	17367988	17368149	1	-	0	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	exon	17367988	17368149	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	intron	17368150	17368245	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	CDS	17368246	17368341	1	-	0	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	exon	17368246	17368341	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	intron	17368342	17368476	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	CDS	17368477	17368538	1	-	2	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	exon	17368477	17368538	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	intron	17368539	17368667	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	CDS	17368668	17368743	1	-	0	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	exon	17368668	17368743	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	intron	17368744	17368829	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	CDS	17368830	17368912	0.82	-	2	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	exon	17368830	17368912	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	intron	17368913	17369029	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	CDS	17369030	17369364	0.92	-	1	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	exon	17369030	17369364	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	intron	17369365	17369459	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	CDS	17369460	17369506	1	-	0	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	exon	17369460	17369506	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	intron	17369507	17369598	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	CDS	17369599	17369735	1	-	2	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	exon	17369599	17369735	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	intron	17369736	17369812	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	CDS	17369813	17369858	1	-	0	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	exon	17369813	17369858	.	-	.	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
Ledus.S3	AUGUSTUS	start_codon	17369856	17369858	.	-	0	transcript_id "Ledus.S3G219800.t1"; gene_id "Ledus.S3G219800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12338.t1 is derived from g5959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11297478	11301656	.	+	.	Ledus.S4G149400
Ledus.S4	AUGUSTUS	transcript	11297478	11301656	.	+	.	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	start_codon	11297478	11297480	.	+	0	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	CDS	11297478	11300562	0.7	+	0	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	exon	11297478	11300562	.	+	.	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	intron	11300563	11300640	.	+	.	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	CDS	11300641	11300895	1	+	2	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	exon	11300641	11300895	.	+	.	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	intron	11300896	11300977	.	+	.	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	CDS	11300978	11301194	0.52	+	2	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	exon	11300978	11301194	.	+	.	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	intron	11301195	11301377	.	+	.	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	CDS	11301378	11301514	0.28	+	1	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	exon	11301378	11301514	.	+	.	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	intron	11301515	11301597	.	+	.	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	CDS	11301598	11301656	0.52	+	2	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	exon	11301598	11301656	.	+	.	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
Ledus.S4	AUGUSTUS	stop_codon	11301657	11301659	.	+	0	transcript_id "Ledus.S4G149400.t1"; gene_id "Ledus.S4G149400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12632.t1 is derived from g6254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13413206	13413517	.	+	.	Ledus.S4G178800
Ledus.S4	AUGUSTUS	transcript	13413206	13413517	.	+	.	transcript_id "Ledus.S4G178800.t1"; gene_id "Ledus.S4G178800"
Ledus.S4	AUGUSTUS	start_codon	13413206	13413208	.	+	0	transcript_id "Ledus.S4G178800.t1"; gene_id "Ledus.S4G178800"
Ledus.S4	AUGUSTUS	CDS	13413206	13413517	0.88	+	0	transcript_id "Ledus.S4G178800.t1"; gene_id "Ledus.S4G178800"
Ledus.S4	AUGUSTUS	exon	13413206	13413517	.	+	.	transcript_id "Ledus.S4G178800.t1"; gene_id "Ledus.S4G178800"
Ledus.S4	AUGUSTUS	stop_codon	13413518	13413520	.	+	0	transcript_id "Ledus.S4G178800.t1"; gene_id "Ledus.S4G178800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5625.t1 is derived from g3064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25430646	25431690	.	-	.	Ledus.S1G304600
Ledus.S1	AUGUSTUS	transcript	25430646	25431690	.	-	.	transcript_id "Ledus.S1G304600.t1"; gene_id "Ledus.S1G304600"
Ledus.S1	AUGUSTUS	stop_codon	25430643	25430645	.	-	0	transcript_id "Ledus.S1G304600.t1"; gene_id "Ledus.S1G304600"
Ledus.S1	AUGUSTUS	CDS	25430646	25430744	0.83	-	0	transcript_id "Ledus.S1G304600.t1"; gene_id "Ledus.S1G304600"
Ledus.S1	AUGUSTUS	exon	25430646	25430744	.	-	.	transcript_id "Ledus.S1G304600.t1"; gene_id "Ledus.S1G304600"
Ledus.S1	AUGUSTUS	intron	25430745	25430841	.	-	.	transcript_id "Ledus.S1G304600.t1"; gene_id "Ledus.S1G304600"
Ledus.S1	AUGUSTUS	CDS	25430842	25431690	0.59	-	0	transcript_id "Ledus.S1G304600.t1"; gene_id "Ledus.S1G304600"
Ledus.S1	AUGUSTUS	exon	25430842	25431690	.	-	.	transcript_id "Ledus.S1G304600.t1"; gene_id "Ledus.S1G304600"
Ledus.S1	AUGUSTUS	start_codon	25431688	25431690	.	-	0	transcript_id "Ledus.S1G304600.t1"; gene_id "Ledus.S1G304600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12039.t1 is derived from g5658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9051344	9053968	.	-	.	Ledus.S4G119500
Ledus.S4	AUGUSTUS	transcript	9051344	9053968	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	stop_codon	9051341	9051343	.	-	0	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9051344	9052261	0.38	-	0	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9051344	9052261	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	intron	9052262	9052366	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9052367	9052400	0.47	-	1	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9052367	9052400	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	intron	9052401	9052531	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9052532	9052623	0.51	-	0	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9052532	9052623	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	intron	9052624	9052944	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9052945	9052968	0.7	-	0	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9052945	9052968	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	intron	9052969	9053086	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9053087	9053212	0.98	-	0	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9053087	9053212	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	intron	9053213	9053348	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9053349	9053507	1	-	0	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9053349	9053507	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	intron	9053508	9053689	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9053690	9053968	0.37	-	0	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9053690	9053968	.	-	.	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	start_codon	9053966	9053968	.	-	0	transcript_id "Ledus.S4G119500.t1"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	transcript	9051344	9053968	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	stop_codon	9051341	9051343	.	-	0	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9051344	9052261	0.29	-	0	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9051344	9052261	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	intron	9052262	9052366	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9052367	9052400	0.48	-	1	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9052367	9052400	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	intron	9052401	9052531	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9052532	9052623	0.5	-	0	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9052532	9052623	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	intron	9052624	9052944	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9052945	9052968	0.69	-	0	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9052945	9052968	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	intron	9052969	9053086	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9053087	9053254	0.99	-	0	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9053087	9053254	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	intron	9053255	9053348	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9053349	9053507	1	-	0	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9053349	9053507	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	intron	9053508	9053689	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	CDS	9053690	9053968	0.3	-	0	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	exon	9053690	9053968	.	-	.	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
Ledus.S4	AUGUSTUS	start_codon	9053966	9053968	.	-	0	transcript_id "Ledus.S4G119500.t2"; gene_id "Ledus.S4G119500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11413.t1 is derived from g5031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4121141	4122870	.	-	.	Ledus.S4G056900
Ledus.S4	AUGUSTUS	transcript	4121141	4122870	.	-	.	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	stop_codon	4121138	4121140	.	-	0	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	CDS	4121141	4121621	0.99	-	1	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	exon	4121141	4121621	.	-	.	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	intron	4121622	4121706	.	-	.	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	CDS	4121707	4122169	0.79	-	2	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	exon	4121707	4122169	.	-	.	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	intron	4122170	4122258	.	-	.	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	CDS	4122259	4122294	0.76	-	2	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	exon	4122259	4122294	.	-	.	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	intron	4122295	4122431	.	-	.	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	CDS	4122432	4122870	0.61	-	0	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	exon	4122432	4122870	.	-	.	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
Ledus.S4	AUGUSTUS	start_codon	4122868	4122870	.	-	0	transcript_id "Ledus.S4G056900.t1"; gene_id "Ledus.S4G056900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4711.t1 is derived from g2149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19185562	19188239	.	+	.	Ledus.S1G213200
Ledus.S1	AUGUSTUS	transcript	19185562	19188239	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	start_codon	19185562	19185564	.	+	0	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	CDS	19185562	19185627	0.9	+	0	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	exon	19185562	19185627	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	intron	19185628	19185703	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	CDS	19185704	19185835	1	+	0	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	exon	19185704	19185835	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	intron	19185836	19186052	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	CDS	19186053	19186332	1	+	0	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	exon	19186053	19186332	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	intron	19186333	19186413	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	CDS	19186414	19186532	1	+	2	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	exon	19186414	19186532	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	intron	19186533	19186605	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	CDS	19186606	19186735	1	+	0	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	exon	19186606	19186735	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	intron	19186736	19186824	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	CDS	19186825	19186901	1	+	2	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	exon	19186825	19186901	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	intron	19186902	19186986	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	CDS	19186987	19187184	1	+	0	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	exon	19186987	19187184	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	intron	19187185	19187326	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	CDS	19187327	19187513	1	+	0	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	exon	19187327	19187513	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	intron	19187514	19187581	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	CDS	19187582	19187778	1	+	2	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	exon	19187582	19187778	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	intron	19187779	19187874	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	CDS	19187875	19187960	1	+	0	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	exon	19187875	19187960	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	intron	19187961	19188058	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	CDS	19188059	19188239	0.86	+	1	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	exon	19188059	19188239	.	+	.	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
Ledus.S1	AUGUSTUS	stop_codon	19188240	19188242	.	+	0	transcript_id "Ledus.S1G213200.t1"; gene_id "Ledus.S1G213200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg58.t1 is derived from g9471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	168280	171248	.	+	.	Ledus.C8G001800
Ledus.C8	AUGUSTUS	transcript	168280	171248	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	start_codon	168280	168282	.	+	0	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	CDS	168280	168375	0.99	+	0	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	exon	168280	168375	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	intron	168376	168671	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	CDS	168672	168797	1	+	0	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	exon	168672	168797	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	intron	168798	168999	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	CDS	169000	169098	1	+	0	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	exon	169000	169098	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	intron	169099	169201	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	CDS	169202	169344	1	+	0	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	exon	169202	169344	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	intron	169345	169474	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	CDS	169475	169583	0.99	+	1	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	exon	169475	169583	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	intron	169584	169703	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	CDS	169704	169811	1	+	0	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	exon	169704	169811	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	intron	169812	170025	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	CDS	170026	170166	0.99	+	0	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	exon	170026	170166	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	intron	170167	170275	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	CDS	170276	170689	0.24	+	0	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	exon	170276	170689	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	intron	170690	170941	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	CDS	170942	171054	0.46	+	0	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	exon	170942	171054	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	intron	171055	171211	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	CDS	171212	171248	0.62	+	1	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	exon	171212	171248	.	+	.	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
Ledus.C8	AUGUSTUS	stop_codon	171249	171251	.	+	0	transcript_id "Ledus.C8G001800.t1"; gene_id "Ledus.C8G001800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12133.t1 is derived from g5752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9730927	9738037	.	+	.	Ledus.S4G128900
Ledus.S4	AUGUSTUS	transcript	9730927	9738037	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	start_codon	9730927	9730929	.	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9730927	9730970	0.97	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9730927	9730970	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9730971	9731255	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9731256	9731586	1	+	1	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9731256	9731586	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9731587	9731807	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9731808	9732058	1	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9731808	9732058	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9732059	9732145	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9732146	9732314	1	+	1	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9732146	9732314	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9732315	9732406	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9732407	9732762	0.99	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9732407	9732762	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9732763	9732911	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9732912	9732984	0.99	+	1	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9732912	9732984	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9732985	9733062	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9733063	9733137	0.87	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9733063	9733137	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9733138	9733282	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9733283	9733519	0.99	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9733283	9733519	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9733520	9734290	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9734291	9734503	1	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9734291	9734503	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9734504	9734673	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9734674	9734752	1	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9734674	9734752	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9734753	9734873	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9734874	9735007	1	+	2	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9734874	9735007	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9735008	9735136	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9735137	9735235	0.87	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9735137	9735235	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9735236	9735337	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9735338	9735442	1	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9735338	9735442	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9735443	9735546	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9735547	9735624	1	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9735547	9735624	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9735625	9735722	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9735723	9735809	0.53	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9735723	9735809	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9735810	9735892	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9735893	9735960	0.28	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9735893	9735960	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9735961	9736316	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9736317	9736383	0.48	+	1	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9736317	9736383	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9736384	9736457	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9736458	9736553	1	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9736458	9736553	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9736554	9736969	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9736970	9737009	1	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9736970	9737009	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9737010	9737122	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9737123	9737877	0.97	+	2	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9737123	9737877	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	intron	9737878	9737971	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	CDS	9737972	9738037	1	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	exon	9737972	9738037	.	+	.	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
Ledus.S4	AUGUSTUS	stop_codon	9738038	9738040	.	+	0	transcript_id "Ledus.S4G128900.t1"; gene_id "Ledus.S4G128900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4659.t1 is derived from g2097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18811140	18813218	.	+	.	Ledus.S1G208000
Ledus.S1	AUGUSTUS	transcript	18811140	18813218	.	+	.	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	start_codon	18811140	18811142	.	+	0	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	CDS	18811140	18811150	0.91	+	0	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	exon	18811140	18811150	.	+	.	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	intron	18811151	18811233	.	+	.	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	CDS	18811234	18811853	0.65	+	1	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	exon	18811234	18811853	.	+	.	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	intron	18811854	18811942	.	+	.	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	CDS	18811943	18812067	0.99	+	2	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	exon	18811943	18812067	.	+	.	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	intron	18812068	18812206	.	+	.	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	CDS	18812207	18812353	1	+	0	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	exon	18812207	18812353	.	+	.	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	intron	18812354	18812450	.	+	.	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	CDS	18812451	18812971	0.52	+	0	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	exon	18812451	18812971	.	+	.	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	intron	18812972	18813064	.	+	.	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	CDS	18813065	18813218	0.99	+	1	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	exon	18813065	18813218	.	+	.	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
Ledus.S1	AUGUSTUS	stop_codon	18813219	18813221	.	+	0	transcript_id "Ledus.S1G208000.t1"; gene_id "Ledus.S1G208000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5148.t1 is derived from g2587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21972608	21975808	.	+	.	Ledus.S1G256900
Ledus.S1	AUGUSTUS	transcript	21972608	21975808	.	+	.	transcript_id "Ledus.S1G256900.t1"; gene_id "Ledus.S1G256900"
Ledus.S1	AUGUSTUS	start_codon	21972608	21972610	.	+	0	transcript_id "Ledus.S1G256900.t1"; gene_id "Ledus.S1G256900"
Ledus.S1	AUGUSTUS	CDS	21972608	21975808	0.85	+	0	transcript_id "Ledus.S1G256900.t1"; gene_id "Ledus.S1G256900"
Ledus.S1	AUGUSTUS	exon	21972608	21975808	.	+	.	transcript_id "Ledus.S1G256900.t1"; gene_id "Ledus.S1G256900"
Ledus.S1	AUGUSTUS	stop_codon	21975809	21975811	.	+	0	transcript_id "Ledus.S1G256900.t1"; gene_id "Ledus.S1G256900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7742.t1 is derived from g12413.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5968266	5970574	.	+	.	Ledus.S5G052000
Ledus.S5	AUGUSTUS	transcript	5968266	5970574	.	+	.	transcript_id "Ledus.S5G052000.t1"; gene_id "Ledus.S5G052000"
Ledus.S5	AUGUSTUS	start_codon	5968266	5968268	.	+	0	transcript_id "Ledus.S5G052000.t1"; gene_id "Ledus.S5G052000"
Ledus.S5	AUGUSTUS	CDS	5968266	5968639	0.86	+	0	transcript_id "Ledus.S5G052000.t1"; gene_id "Ledus.S5G052000"
Ledus.S5	AUGUSTUS	exon	5968266	5968639	.	+	.	transcript_id "Ledus.S5G052000.t1"; gene_id "Ledus.S5G052000"
Ledus.S5	AUGUSTUS	intron	5968640	5968774	.	+	.	transcript_id "Ledus.S5G052000.t1"; gene_id "Ledus.S5G052000"
Ledus.S5	AUGUSTUS	CDS	5968775	5969755	0.86	+	1	transcript_id "Ledus.S5G052000.t1"; gene_id "Ledus.S5G052000"
Ledus.S5	AUGUSTUS	exon	5968775	5969755	.	+	.	transcript_id "Ledus.S5G052000.t1"; gene_id "Ledus.S5G052000"
Ledus.S5	AUGUSTUS	intron	5969756	5969874	.	+	.	transcript_id "Ledus.S5G052000.t1"; gene_id "Ledus.S5G052000"
Ledus.S5	AUGUSTUS	CDS	5969875	5970574	0.96	+	1	transcript_id "Ledus.S5G052000.t1"; gene_id "Ledus.S5G052000"
Ledus.S5	AUGUSTUS	exon	5969875	5970574	.	+	.	transcript_id "Ledus.S5G052000.t1"; gene_id "Ledus.S5G052000"
Ledus.S5	AUGUSTUS	stop_codon	5970575	5970577	.	+	0	transcript_id "Ledus.S5G052000.t1"; gene_id "Ledus.S5G052000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1982.t1 is derived from g8845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14035954	14037489	.	+	.	Ledus.S2G186400
Ledus.S2	AUGUSTUS	transcript	14035954	14037489	.	+	.	transcript_id "Ledus.S2G186400.t1"; gene_id "Ledus.S2G186400"
Ledus.S2	AUGUSTUS	start_codon	14035954	14035956	.	+	0	transcript_id "Ledus.S2G186400.t1"; gene_id "Ledus.S2G186400"
Ledus.S2	AUGUSTUS	CDS	14035954	14037489	0.63	+	0	transcript_id "Ledus.S2G186400.t1"; gene_id "Ledus.S2G186400"
Ledus.S2	AUGUSTUS	exon	14035954	14037489	.	+	.	transcript_id "Ledus.S2G186400.t1"; gene_id "Ledus.S2G186400"
Ledus.S2	AUGUSTUS	stop_codon	14037490	14037492	.	+	0	transcript_id "Ledus.S2G186400.t1"; gene_id "Ledus.S2G186400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11141.t1 is derived from g4759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2136740	2137294	.	-	.	Ledus.S4G029700
Ledus.S4	AUGUSTUS	transcript	2136740	2137294	.	-	.	transcript_id "Ledus.S4G029700.t1"; gene_id "Ledus.S4G029700"
Ledus.S4	AUGUSTUS	stop_codon	2136737	2136739	.	-	0	transcript_id "Ledus.S4G029700.t1"; gene_id "Ledus.S4G029700"
Ledus.S4	AUGUSTUS	CDS	2136740	2137294	0.66	-	0	transcript_id "Ledus.S4G029700.t1"; gene_id "Ledus.S4G029700"
Ledus.S4	AUGUSTUS	exon	2136740	2137294	.	-	.	transcript_id "Ledus.S4G029700.t1"; gene_id "Ledus.S4G029700"
Ledus.S4	AUGUSTUS	start_codon	2137292	2137294	.	-	0	transcript_id "Ledus.S4G029700.t1"; gene_id "Ledus.S4G029700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12026.t1 is derived from g5645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8917118	8917414	.	+	.	Ledus.S4G118200
Ledus.S4	AUGUSTUS	transcript	8917118	8917414	.	+	.	transcript_id "Ledus.S4G118200.t1"; gene_id "Ledus.S4G118200"
Ledus.S4	AUGUSTUS	start_codon	8917118	8917120	.	+	0	transcript_id "Ledus.S4G118200.t1"; gene_id "Ledus.S4G118200"
Ledus.S4	AUGUSTUS	CDS	8917118	8917414	0.83	+	0	transcript_id "Ledus.S4G118200.t1"; gene_id "Ledus.S4G118200"
Ledus.S4	AUGUSTUS	exon	8917118	8917414	.	+	.	transcript_id "Ledus.S4G118200.t1"; gene_id "Ledus.S4G118200"
Ledus.S4	AUGUSTUS	stop_codon	8917415	8917417	.	+	0	transcript_id "Ledus.S4G118200.t1"; gene_id "Ledus.S4G118200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6783.t1 is derived from g4227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34119263	34119748	.	+	.	Ledus.S1G420400
Ledus.S1	AUGUSTUS	transcript	34119263	34119748	.	+	.	transcript_id "Ledus.S1G420400.t1"; gene_id "Ledus.S1G420400"
Ledus.S1	AUGUSTUS	start_codon	34119263	34119265	.	+	0	transcript_id "Ledus.S1G420400.t1"; gene_id "Ledus.S1G420400"
Ledus.S1	AUGUSTUS	CDS	34119263	34119748	0.79	+	0	transcript_id "Ledus.S1G420400.t1"; gene_id "Ledus.S1G420400"
Ledus.S1	AUGUSTUS	exon	34119263	34119748	.	+	.	transcript_id "Ledus.S1G420400.t1"; gene_id "Ledus.S1G420400"
Ledus.S1	AUGUSTUS	stop_codon	34119749	34119751	.	+	0	transcript_id "Ledus.S1G420400.t1"; gene_id "Ledus.S1G420400"
# This transcript jg12272.t2 is derived from g5892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12273.t1 is derived from g5893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10730009	10730671	.	-	.	Ledus.S4G142900
Ledus.S4	AUGUSTUS	transcript	10730009	10730671	.	-	.	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	stop_codon	10730006	10730008	.	-	0	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	CDS	10730009	10730086	0.98	-	0	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	exon	10730009	10730086	.	-	.	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	intron	10730087	10730285	.	-	.	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	CDS	10730286	10730339	0.96	-	0	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	exon	10730286	10730339	.	-	.	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	intron	10730340	10730421	.	-	.	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	CDS	10730422	10730484	0.7	-	0	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	exon	10730422	10730484	.	-	.	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	intron	10730485	10730590	.	-	.	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	CDS	10730591	10730671	0.93	-	0	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	exon	10730591	10730671	.	-	.	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
Ledus.S4	AUGUSTUS	start_codon	10730669	10730671	.	-	0	transcript_id "Ledus.S4G142900.t1"; gene_id "Ledus.S4G142900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg793.t1 is derived from g7654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5129931	5132444	.	+	.	Ledus.S2G067500
Ledus.S2	AUGUSTUS	transcript	5129931	5132444	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	start_codon	5129931	5129933	.	+	0	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	CDS	5129931	5130131	0.97	+	0	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	exon	5129931	5130131	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	intron	5130132	5130212	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	CDS	5130213	5130398	1	+	0	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	exon	5130213	5130398	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	intron	5130399	5130491	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	CDS	5130492	5130604	1	+	0	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	exon	5130492	5130604	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	intron	5130605	5130673	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	CDS	5130674	5130857	1	+	1	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	exon	5130674	5130857	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	intron	5130858	5130940	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	CDS	5130941	5131038	1	+	0	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	exon	5130941	5131038	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	intron	5131039	5131111	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	CDS	5131112	5131319	1	+	1	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	exon	5131112	5131319	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	intron	5131320	5131395	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	CDS	5131396	5131653	1	+	0	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	exon	5131396	5131653	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	intron	5131654	5131730	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	CDS	5131731	5131868	0.96	+	0	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	exon	5131731	5131868	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	intron	5131869	5131982	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	CDS	5131983	5132444	0.46	+	0	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	exon	5131983	5132444	.	+	.	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
Ledus.S2	AUGUSTUS	stop_codon	5132445	5132447	.	+	0	transcript_id "Ledus.S2G067500.t1"; gene_id "Ledus.S2G067500"
# This transcript jg3482.t2 is derived from g917.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3482.t3 is derived from g917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3483.t1 is derived from g918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8672423	8674537	.	+	.	Ledus.S1G090400
Ledus.S1	AUGUSTUS	transcript	8672423	8674537	.	+	.	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	start_codon	8672423	8672425	.	+	0	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	CDS	8672423	8672478	0.86	+	0	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	exon	8672423	8672478	.	+	.	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	intron	8672479	8672787	.	+	.	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	CDS	8672788	8673070	0.98	+	1	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	exon	8672788	8673070	.	+	.	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	intron	8673071	8673312	.	+	.	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	CDS	8673313	8673436	1	+	0	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	exon	8673313	8673436	.	+	.	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	intron	8673437	8673548	.	+	.	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	CDS	8673549	8674317	1	+	2	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	exon	8673549	8674317	.	+	.	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	intron	8674318	8674470	.	+	.	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	CDS	8674471	8674537	0.59	+	1	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	exon	8674471	8674537	.	+	.	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
Ledus.S1	AUGUSTUS	stop_codon	8674538	8674540	.	+	0	transcript_id "Ledus.S1G090400.t1"; gene_id "Ledus.S1G090400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10319.t1 is derived from g11349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14219461	14221286	.	+	.	Ledus.S3G179600
Ledus.S3	AUGUSTUS	transcript	14219461	14221286	.	+	.	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	start_codon	14219461	14219463	.	+	0	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	CDS	14219461	14219707	0.9	+	0	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	exon	14219461	14219707	.	+	.	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	intron	14219708	14219802	.	+	.	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	CDS	14219803	14220023	1	+	2	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	exon	14219803	14220023	.	+	.	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	intron	14220024	14220089	.	+	.	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	CDS	14220090	14220293	1	+	0	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	exon	14220090	14220293	.	+	.	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	intron	14220294	14220388	.	+	.	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	CDS	14220389	14220604	1	+	0	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	exon	14220389	14220604	.	+	.	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	intron	14220605	14220697	.	+	.	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	CDS	14220698	14220884	1	+	0	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	exon	14220698	14220884	.	+	.	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	intron	14220885	14220975	.	+	.	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	CDS	14220976	14221286	1	+	2	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	exon	14220976	14221286	.	+	.	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
Ledus.S3	AUGUSTUS	stop_codon	14221287	14221289	.	+	0	transcript_id "Ledus.S3G179600.t1"; gene_id "Ledus.S3G179600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3444.t1 is derived from g879.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8397528	8398883	.	+	.	Ledus.S1G086500
Ledus.S1	AUGUSTUS	transcript	8397528	8398883	.	+	.	transcript_id "Ledus.S1G086500.t1"; gene_id "Ledus.S1G086500"
Ledus.S1	AUGUSTUS	start_codon	8397528	8397530	.	+	0	transcript_id "Ledus.S1G086500.t1"; gene_id "Ledus.S1G086500"
Ledus.S1	AUGUSTUS	CDS	8397528	8398883	0.72	+	0	transcript_id "Ledus.S1G086500.t1"; gene_id "Ledus.S1G086500"
Ledus.S1	AUGUSTUS	exon	8397528	8398883	.	+	.	transcript_id "Ledus.S1G086500.t1"; gene_id "Ledus.S1G086500"
Ledus.S1	AUGUSTUS	stop_codon	8398884	8398886	.	+	0	transcript_id "Ledus.S1G086500.t1"; gene_id "Ledus.S1G086500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5040.t1 is derived from g2479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21252090	21255193	.	-	.	Ledus.S1G246100
Ledus.S1	AUGUSTUS	transcript	21252090	21255193	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	stop_codon	21252087	21252089	.	-	0	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21252090	21252320	0.98	-	0	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21252090	21252320	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	intron	21252321	21252389	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21252390	21252471	1	-	1	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21252390	21252471	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	intron	21252472	21252555	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21252556	21252668	1	-	0	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21252556	21252668	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	intron	21252669	21252768	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21252769	21253109	0.99	-	2	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21252769	21253109	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	intron	21253110	21253245	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21253246	21253270	1	-	0	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21253246	21253270	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	intron	21253271	21253369	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21253370	21253459	1	-	0	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21253370	21253459	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	intron	21253460	21253551	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21253552	21253635	1	-	0	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21253552	21253635	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	intron	21253636	21253745	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21253746	21253842	0.99	-	1	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21253746	21253842	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	intron	21253843	21253945	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21253946	21254009	0.87	-	2	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21253946	21254009	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	intron	21254010	21254278	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21254279	21254341	1	-	2	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21254279	21254341	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	intron	21254342	21254436	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21254437	21254527	1	-	0	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21254437	21254527	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	intron	21254528	21254622	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21254623	21254684	1	-	2	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21254623	21254684	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	intron	21254685	21254772	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	CDS	21254773	21255193	0.89	-	0	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	exon	21254773	21255193	.	-	.	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
Ledus.S1	AUGUSTUS	start_codon	21255191	21255193	.	-	0	transcript_id "Ledus.S1G246100.t1"; gene_id "Ledus.S1G246100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg504.t1 is derived from g7365.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2956182	2958909	.	+	.	Ledus.S2G038600
Ledus.S2	AUGUSTUS	transcript	2956182	2958909	.	+	.	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	start_codon	2956182	2956184	.	+	0	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	CDS	2956182	2956756	0.97	+	0	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	exon	2956182	2956756	.	+	.	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	intron	2956757	2957270	.	+	.	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	CDS	2957271	2957404	0.98	+	1	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	exon	2957271	2957404	.	+	.	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	intron	2957405	2957541	.	+	.	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	CDS	2957542	2958200	0.65	+	2	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	exon	2957542	2958200	.	+	.	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	intron	2958201	2958876	.	+	.	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	CDS	2958877	2958909	1	+	0	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	exon	2958877	2958909	.	+	.	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	stop_codon	2958910	2958912	.	+	0	transcript_id "Ledus.S2G038600.t1"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	transcript	2956182	2958331	.	+	.	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	start_codon	2956182	2956184	.	+	0	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	CDS	2956182	2956756	0.96	+	0	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	exon	2956182	2956756	.	+	.	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	intron	2956757	2957270	.	+	.	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	CDS	2957271	2957404	0.95	+	1	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	exon	2957271	2957404	.	+	.	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	intron	2957405	2957541	.	+	.	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	CDS	2957542	2958200	0.23	+	2	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	exon	2957542	2958200	.	+	.	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	intron	2958201	2958313	.	+	.	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	CDS	2958314	2958331	0.38	+	0	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	exon	2958314	2958331	.	+	.	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
Ledus.S2	AUGUSTUS	stop_codon	2958332	2958334	.	+	0	transcript_id "Ledus.S2G038600.t2"; gene_id "Ledus.S2G038600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9660.t1 is derived from g10690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8857244	8858637	.	-	.	Ledus.S3G113700
Ledus.S3	AUGUSTUS	transcript	8857244	8858637	.	-	.	transcript_id "Ledus.S3G113700.t1"; gene_id "Ledus.S3G113700"
Ledus.S3	AUGUSTUS	stop_codon	8857241	8857243	.	-	0	transcript_id "Ledus.S3G113700.t1"; gene_id "Ledus.S3G113700"
Ledus.S3	AUGUSTUS	CDS	8857244	8858083	1	-	0	transcript_id "Ledus.S3G113700.t1"; gene_id "Ledus.S3G113700"
Ledus.S3	AUGUSTUS	exon	8857244	8858083	.	-	.	transcript_id "Ledus.S3G113700.t1"; gene_id "Ledus.S3G113700"
Ledus.S3	AUGUSTUS	intron	8858084	8858163	.	-	.	transcript_id "Ledus.S3G113700.t1"; gene_id "Ledus.S3G113700"
Ledus.S3	AUGUSTUS	CDS	8858164	8858423	0.99	-	2	transcript_id "Ledus.S3G113700.t1"; gene_id "Ledus.S3G113700"
Ledus.S3	AUGUSTUS	exon	8858164	8858423	.	-	.	transcript_id "Ledus.S3G113700.t1"; gene_id "Ledus.S3G113700"
Ledus.S3	AUGUSTUS	intron	8858424	8858513	.	-	.	transcript_id "Ledus.S3G113700.t1"; gene_id "Ledus.S3G113700"
Ledus.S3	AUGUSTUS	CDS	8858514	8858637	1	-	0	transcript_id "Ledus.S3G113700.t1"; gene_id "Ledus.S3G113700"
Ledus.S3	AUGUSTUS	exon	8858514	8858637	.	-	.	transcript_id "Ledus.S3G113700.t1"; gene_id "Ledus.S3G113700"
Ledus.S3	AUGUSTUS	start_codon	8858635	8858637	.	-	0	transcript_id "Ledus.S3G113700.t1"; gene_id "Ledus.S3G113700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1578.t1 is derived from g8439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11053426	11054616	.	+	.	Ledus.S2G146000
Ledus.S2	AUGUSTUS	transcript	11053426	11054616	.	+	.	transcript_id "Ledus.S2G146000.t1"; gene_id "Ledus.S2G146000"
Ledus.S2	AUGUSTUS	start_codon	11053426	11053428	.	+	0	transcript_id "Ledus.S2G146000.t1"; gene_id "Ledus.S2G146000"
Ledus.S2	AUGUSTUS	CDS	11053426	11054616	1	+	0	transcript_id "Ledus.S2G146000.t1"; gene_id "Ledus.S2G146000"
Ledus.S2	AUGUSTUS	exon	11053426	11054616	.	+	.	transcript_id "Ledus.S2G146000.t1"; gene_id "Ledus.S2G146000"
Ledus.S2	AUGUSTUS	stop_codon	11054617	11054619	.	+	0	transcript_id "Ledus.S2G146000.t1"; gene_id "Ledus.S2G146000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3123.t1 is derived from g558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6147421	6148557	.	+	.	Ledus.S1G054400
Ledus.S1	AUGUSTUS	transcript	6147421	6148557	.	+	.	transcript_id "Ledus.S1G054400.t1"; gene_id "Ledus.S1G054400"
Ledus.S1	AUGUSTUS	start_codon	6147421	6147423	.	+	0	transcript_id "Ledus.S1G054400.t1"; gene_id "Ledus.S1G054400"
Ledus.S1	AUGUSTUS	CDS	6147421	6148557	1	+	0	transcript_id "Ledus.S1G054400.t1"; gene_id "Ledus.S1G054400"
Ledus.S1	AUGUSTUS	exon	6147421	6148557	.	+	.	transcript_id "Ledus.S1G054400.t1"; gene_id "Ledus.S1G054400"
Ledus.S1	AUGUSTUS	stop_codon	6148558	6148560	.	+	0	transcript_id "Ledus.S1G054400.t1"; gene_id "Ledus.S1G054400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 6 different transcripts
# This transcript jg2701.t1 is derived from g134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2086766	2088643	.	+	.	Ledus.S1G012200
Ledus.S1	AUGUSTUS	transcript	2086766	2088156	.	+	.	transcript_id "Ledus.S1G012200.t1"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	start_codon	2086766	2086768	.	+	0	transcript_id "Ledus.S1G012200.t1"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	CDS	2086766	2087904	0.88	+	0	transcript_id "Ledus.S1G012200.t1"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	exon	2086766	2087904	.	+	.	transcript_id "Ledus.S1G012200.t1"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	intron	2087905	2088020	.	+	.	transcript_id "Ledus.S1G012200.t1"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	CDS	2088021	2088156	0.98	+	1	transcript_id "Ledus.S1G012200.t1"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	exon	2088021	2088156	.	+	.	transcript_id "Ledus.S1G012200.t1"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	stop_codon	2088157	2088159	.	+	0	transcript_id "Ledus.S1G012200.t1"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	transcript	2086766	2087394	.	+	.	transcript_id "Ledus.S1G012200.t2"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	start_codon	2086766	2086768	.	+	0	transcript_id "Ledus.S1G012200.t2"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	CDS	2086766	2087242	0.48	+	0	transcript_id "Ledus.S1G012200.t2"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	exon	2086766	2087242	.	+	.	transcript_id "Ledus.S1G012200.t2"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	intron	2087243	2087337	.	+	.	transcript_id "Ledus.S1G012200.t2"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	CDS	2087338	2087394	1	+	0	transcript_id "Ledus.S1G012200.t2"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	exon	2087338	2087394	.	+	.	transcript_id "Ledus.S1G012200.t2"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	stop_codon	2087395	2087397	.	+	0	transcript_id "Ledus.S1G012200.t2"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	transcript	2086766	2088643	.	+	.	transcript_id "Ledus.S1G012200.t3"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	start_codon	2086766	2086768	.	+	0	transcript_id "Ledus.S1G012200.t3"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	CDS	2086766	2088643	0.9	+	0	transcript_id "Ledus.S1G012200.t3"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	exon	2086766	2088643	.	+	.	transcript_id "Ledus.S1G012200.t3"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	stop_codon	2088644	2088646	.	+	0	transcript_id "Ledus.S1G012200.t3"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	transcript	2087642	2088643	.	+	.	transcript_id "Ledus.S1G012200.t4"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	start_codon	2087642	2087644	.	+	0	transcript_id "Ledus.S1G012200.t4"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	CDS	2087642	2088643	0.57	+	0	transcript_id "Ledus.S1G012200.t4"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	exon	2087642	2088643	.	+	.	transcript_id "Ledus.S1G012200.t4"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	stop_codon	2088644	2088646	.	+	0	transcript_id "Ledus.S1G012200.t4"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	transcript	2088341	2088643	.	+	.	transcript_id "Ledus.S1G012200.t5"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	start_codon	2088341	2088343	.	+	0	transcript_id "Ledus.S1G012200.t5"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	CDS	2088341	2088643	0.53	+	0	transcript_id "Ledus.S1G012200.t5"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	exon	2088341	2088643	.	+	.	transcript_id "Ledus.S1G012200.t5"; gene_id "Ledus.S1G012200"
Ledus.S1	AUGUSTUS	stop_codon	2088644	2088646	.	+	0	transcript_id "Ledus.S1G012200.t5"; gene_id "Ledus.S1G012200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7847.t1 is derived from g12518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7440248	7442076	.	-	.	Ledus.S5G062500
Ledus.S5	AUGUSTUS	transcript	7440248	7442076	.	-	.	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	stop_codon	7440245	7440247	.	-	0	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	CDS	7440248	7440439	0.83	-	0	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	exon	7440248	7440439	.	-	.	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	intron	7440440	7440515	.	-	.	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	CDS	7440516	7440861	0.91	-	1	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	exon	7440516	7440861	.	-	.	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	intron	7440862	7440951	.	-	.	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	CDS	7440952	7441067	0.81	-	0	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	exon	7440952	7441067	.	-	.	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	intron	7441068	7441167	.	-	.	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	CDS	7441168	7441515	0.99	-	0	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	exon	7441168	7441515	.	-	.	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	intron	7441516	7441596	.	-	.	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	CDS	7441597	7441814	1	-	2	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	exon	7441597	7441814	.	-	.	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	intron	7441815	7441898	.	-	.	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	CDS	7441899	7442076	0.64	-	0	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	exon	7441899	7442076	.	-	.	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
Ledus.S5	AUGUSTUS	start_codon	7442074	7442076	.	-	0	transcript_id "Ledus.S5G062500.t1"; gene_id "Ledus.S5G062500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg592.t1 is derived from g7453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3528282	3534081	.	-	.	Ledus.S2G047400
Ledus.S2	AUGUSTUS	transcript	3528282	3534081	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	stop_codon	3528279	3528281	.	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3528282	3528405	1	-	1	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3528282	3528405	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3528406	3528487	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3528488	3528699	0.99	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3528488	3528699	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3528700	3528850	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3528851	3528925	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3528851	3528925	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3528926	3529019	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3529020	3529082	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3529020	3529082	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3529083	3529160	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3529161	3529268	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3529161	3529268	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3529269	3529623	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3529624	3529782	0.99	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3529624	3529782	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3529783	3529893	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3529894	3529968	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3529894	3529968	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3529969	3530117	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3530118	3530201	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3530118	3530201	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3530202	3530336	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3530337	3530390	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3530337	3530390	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3530391	3530517	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3530518	3530631	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3530518	3530631	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3530632	3530717	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3530718	3530870	0.99	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3530718	3530870	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3530871	3530954	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3530955	3531027	1	-	1	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3530955	3531027	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3531028	3531143	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3531144	3531235	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3531144	3531235	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3531236	3531340	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3531341	3531439	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3531341	3531439	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3531440	3531579	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3531580	3531663	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3531580	3531663	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3531664	3531948	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3531949	3532080	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3531949	3532080	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3532081	3532167	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3532168	3532302	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3532168	3532302	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3532303	3532425	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3532426	3532474	1	-	1	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3532426	3532474	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3532475	3532654	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3532655	3532713	0.71	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3532655	3532713	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3532714	3532834	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3532835	3532938	0.66	-	2	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3532835	3532938	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3532939	3533085	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3533086	3533287	1	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3533086	3533287	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3533288	3533376	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3533377	3533548	1	-	1	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3533377	3533548	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3533549	3533723	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3533724	3533815	0.98	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3533724	3533815	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	intron	3533816	3533904	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	CDS	3533905	3534081	0.74	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	exon	3533905	3534081	.	-	.	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
Ledus.S2	AUGUSTUS	start_codon	3534079	3534081	.	-	0	transcript_id "Ledus.S2G047400.t1"; gene_id "Ledus.S2G047400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg977.t1 is derived from g7838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6439045	6439477	.	-	.	Ledus.S2G085900
Ledus.S2	AUGUSTUS	transcript	6439045	6439477	.	-	.	transcript_id "Ledus.S2G085900.t1"; gene_id "Ledus.S2G085900"
Ledus.S2	AUGUSTUS	stop_codon	6439042	6439044	.	-	0	transcript_id "Ledus.S2G085900.t1"; gene_id "Ledus.S2G085900"
Ledus.S2	AUGUSTUS	CDS	6439045	6439339	0.83	-	1	transcript_id "Ledus.S2G085900.t1"; gene_id "Ledus.S2G085900"
Ledus.S2	AUGUSTUS	exon	6439045	6439339	.	-	.	transcript_id "Ledus.S2G085900.t1"; gene_id "Ledus.S2G085900"
Ledus.S2	AUGUSTUS	intron	6439340	6439409	.	-	.	transcript_id "Ledus.S2G085900.t1"; gene_id "Ledus.S2G085900"
Ledus.S2	AUGUSTUS	CDS	6439410	6439477	0.36	-	0	transcript_id "Ledus.S2G085900.t1"; gene_id "Ledus.S2G085900"
Ledus.S2	AUGUSTUS	exon	6439410	6439477	.	-	.	transcript_id "Ledus.S2G085900.t1"; gene_id "Ledus.S2G085900"
Ledus.S2	AUGUSTUS	start_codon	6439475	6439477	.	-	0	transcript_id "Ledus.S2G085900.t1"; gene_id "Ledus.S2G085900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9772.t1 is derived from g10802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9732146	9735334	.	+	.	Ledus.S3G124900
Ledus.S3	AUGUSTUS	transcript	9732146	9735334	.	+	.	transcript_id "Ledus.S3G124900.t1"; gene_id "Ledus.S3G124900"
Ledus.S3	AUGUSTUS	start_codon	9732146	9732148	.	+	0	transcript_id "Ledus.S3G124900.t1"; gene_id "Ledus.S3G124900"
Ledus.S3	AUGUSTUS	CDS	9732146	9735334	1	+	0	transcript_id "Ledus.S3G124900.t1"; gene_id "Ledus.S3G124900"
Ledus.S3	AUGUSTUS	exon	9732146	9735334	.	+	.	transcript_id "Ledus.S3G124900.t1"; gene_id "Ledus.S3G124900"
Ledus.S3	AUGUSTUS	stop_codon	9735335	9735337	.	+	0	transcript_id "Ledus.S3G124900.t1"; gene_id "Ledus.S3G124900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9305.t1 is derived from g10335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5886958	5887329	.	+	.	Ledus.S3G078200
Ledus.S3	AUGUSTUS	transcript	5886958	5887329	.	+	.	transcript_id "Ledus.S3G078200.t1"; gene_id "Ledus.S3G078200"
Ledus.S3	AUGUSTUS	start_codon	5886958	5886960	.	+	0	transcript_id "Ledus.S3G078200.t1"; gene_id "Ledus.S3G078200"
Ledus.S3	AUGUSTUS	CDS	5886958	5887181	0.92	+	0	transcript_id "Ledus.S3G078200.t1"; gene_id "Ledus.S3G078200"
Ledus.S3	AUGUSTUS	exon	5886958	5887181	.	+	.	transcript_id "Ledus.S3G078200.t1"; gene_id "Ledus.S3G078200"
Ledus.S3	AUGUSTUS	intron	5887182	5887253	.	+	.	transcript_id "Ledus.S3G078200.t1"; gene_id "Ledus.S3G078200"
Ledus.S3	AUGUSTUS	CDS	5887254	5887329	0.92	+	1	transcript_id "Ledus.S3G078200.t1"; gene_id "Ledus.S3G078200"
Ledus.S3	AUGUSTUS	exon	5887254	5887329	.	+	.	transcript_id "Ledus.S3G078200.t1"; gene_id "Ledus.S3G078200"
Ledus.S3	AUGUSTUS	stop_codon	5887330	5887332	.	+	0	transcript_id "Ledus.S3G078200.t1"; gene_id "Ledus.S3G078200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2658.t1 is derived from g91.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1308821	1310777	.	-	.	Ledus.S1G007900
Ledus.S1	AUGUSTUS	transcript	1308821	1310777	.	-	.	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	stop_codon	1308818	1308820	.	-	0	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	CDS	1308821	1308871	0.6	-	0	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	exon	1308821	1308871	.	-	.	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	intron	1308872	1308939	.	-	.	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	CDS	1308940	1309219	0.65	-	1	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	exon	1308940	1309219	.	-	.	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	intron	1309220	1310081	.	-	.	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	CDS	1310082	1310144	0.63	-	1	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	exon	1310082	1310144	.	-	.	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	intron	1310145	1310325	.	-	.	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	CDS	1310326	1310332	0.62	-	2	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	exon	1310326	1310332	.	-	.	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	intron	1310333	1310418	.	-	.	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	CDS	1310419	1310486	0.85	-	1	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	exon	1310419	1310486	.	-	.	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	intron	1310487	1310652	.	-	.	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	CDS	1310653	1310777	0.75	-	0	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	exon	1310653	1310777	.	-	.	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
Ledus.S1	AUGUSTUS	start_codon	1310775	1310777	.	-	0	transcript_id "Ledus.S1G007900.t1"; gene_id "Ledus.S1G007900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4259.t1 is derived from g1695.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15800175	15801197	.	+	.	Ledus.S1G168000
Ledus.S1	AUGUSTUS	transcript	15800175	15801197	.	+	.	transcript_id "Ledus.S1G168000.t1"; gene_id "Ledus.S1G168000"
Ledus.S1	AUGUSTUS	start_codon	15800175	15800177	.	+	0	transcript_id "Ledus.S1G168000.t1"; gene_id "Ledus.S1G168000"
Ledus.S1	AUGUSTUS	CDS	15800175	15801197	0.96	+	0	transcript_id "Ledus.S1G168000.t1"; gene_id "Ledus.S1G168000"
Ledus.S1	AUGUSTUS	exon	15800175	15801197	.	+	.	transcript_id "Ledus.S1G168000.t1"; gene_id "Ledus.S1G168000"
Ledus.S1	AUGUSTUS	stop_codon	15801198	15801200	.	+	0	transcript_id "Ledus.S1G168000.t1"; gene_id "Ledus.S1G168000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8605.t1 is derived from g9635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	532345	532866	.	+	.	Ledus.S3G008200
Ledus.S3	AUGUSTUS	transcript	532345	532866	.	+	.	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	start_codon	532345	532347	.	+	0	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	CDS	532345	532403	0.96	+	0	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	exon	532345	532403	.	+	.	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	intron	532404	532496	.	+	.	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	CDS	532497	532538	0.66	+	1	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	exon	532497	532538	.	+	.	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	intron	532539	532643	.	+	.	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	CDS	532644	532695	0.47	+	1	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	exon	532644	532695	.	+	.	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	intron	532696	532809	.	+	.	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	CDS	532810	532866	0.57	+	0	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	exon	532810	532866	.	+	.	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
Ledus.S3	AUGUSTUS	stop_codon	532867	532869	.	+	0	transcript_id "Ledus.S3G008200.t1"; gene_id "Ledus.S3G008200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11563.t1 is derived from g5181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5291041	5291864	.	-	.	Ledus.S4G071900
Ledus.S4	AUGUSTUS	transcript	5291041	5291864	.	-	.	transcript_id "Ledus.S4G071900.t1"; gene_id "Ledus.S4G071900"
Ledus.S4	AUGUSTUS	stop_codon	5291038	5291040	.	-	0	transcript_id "Ledus.S4G071900.t1"; gene_id "Ledus.S4G071900"
Ledus.S4	AUGUSTUS	CDS	5291041	5291357	0.9	-	2	transcript_id "Ledus.S4G071900.t1"; gene_id "Ledus.S4G071900"
Ledus.S4	AUGUSTUS	exon	5291041	5291357	.	-	.	transcript_id "Ledus.S4G071900.t1"; gene_id "Ledus.S4G071900"
Ledus.S4	AUGUSTUS	intron	5291358	5291445	.	-	.	transcript_id "Ledus.S4G071900.t1"; gene_id "Ledus.S4G071900"
Ledus.S4	AUGUSTUS	CDS	5291446	5291509	1	-	0	transcript_id "Ledus.S4G071900.t1"; gene_id "Ledus.S4G071900"
Ledus.S4	AUGUSTUS	exon	5291446	5291509	.	-	.	transcript_id "Ledus.S4G071900.t1"; gene_id "Ledus.S4G071900"
Ledus.S4	AUGUSTUS	intron	5291510	5291600	.	-	.	transcript_id "Ledus.S4G071900.t1"; gene_id "Ledus.S4G071900"
Ledus.S4	AUGUSTUS	CDS	5291601	5291864	0.98	-	0	transcript_id "Ledus.S4G071900.t1"; gene_id "Ledus.S4G071900"
Ledus.S4	AUGUSTUS	exon	5291601	5291864	.	-	.	transcript_id "Ledus.S4G071900.t1"; gene_id "Ledus.S4G071900"
Ledus.S4	AUGUSTUS	start_codon	5291862	5291864	.	-	0	transcript_id "Ledus.S4G071900.t1"; gene_id "Ledus.S4G071900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1551.t1 is derived from g8412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10890070	10890693	.	+	.	Ledus.S2G143300
Ledus.S2	AUGUSTUS	transcript	10890070	10890693	.	+	.	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	start_codon	10890070	10890072	.	+	0	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	CDS	10890070	10890237	0.67	+	0	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	exon	10890070	10890237	.	+	.	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	intron	10890238	10890322	.	+	.	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	CDS	10890323	10890382	1	+	0	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	exon	10890323	10890382	.	+	.	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	intron	10890383	10890462	.	+	.	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	CDS	10890463	10890509	1	+	0	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	exon	10890463	10890509	.	+	.	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	intron	10890510	10890602	.	+	.	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	CDS	10890603	10890693	0.97	+	1	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	exon	10890603	10890693	.	+	.	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
Ledus.S2	AUGUSTUS	stop_codon	10890694	10890696	.	+	0	transcript_id "Ledus.S2G143300.t1"; gene_id "Ledus.S2G143300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10418.t1 is derived from g11448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15043870	15044085	.	+	.	Ledus.S3G189500
Ledus.S3	AUGUSTUS	transcript	15043870	15044085	.	+	.	transcript_id "Ledus.S3G189500.t1"; gene_id "Ledus.S3G189500"
Ledus.S3	AUGUSTUS	start_codon	15043870	15043872	.	+	0	transcript_id "Ledus.S3G189500.t1"; gene_id "Ledus.S3G189500"
Ledus.S3	AUGUSTUS	CDS	15043870	15044085	0.54	+	0	transcript_id "Ledus.S3G189500.t1"; gene_id "Ledus.S3G189500"
Ledus.S3	AUGUSTUS	exon	15043870	15044085	.	+	.	transcript_id "Ledus.S3G189500.t1"; gene_id "Ledus.S3G189500"
Ledus.S3	AUGUSTUS	stop_codon	15044086	15044088	.	+	0	transcript_id "Ledus.S3G189500.t1"; gene_id "Ledus.S3G189500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12403.t1 is derived from g6024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11678552	11680714	.	-	.	Ledus.S4G155900
Ledus.S4	AUGUSTUS	transcript	11678552	11680714	.	-	.	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	stop_codon	11678549	11678551	.	-	0	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	CDS	11678552	11678599	0.41	-	0	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	exon	11678552	11678599	.	-	.	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	intron	11678600	11678711	.	-	.	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	CDS	11678712	11679009	0.11	-	1	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	exon	11678712	11679009	.	-	.	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	intron	11679010	11679107	.	-	.	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	CDS	11679108	11679515	0.98	-	1	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	exon	11679108	11679515	.	-	.	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	intron	11679516	11679621	.	-	.	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	CDS	11679622	11679951	1	-	1	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	exon	11679622	11679951	.	-	.	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	intron	11679952	11680115	.	-	.	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	CDS	11680116	11680714	0.99	-	0	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	exon	11680116	11680714	.	-	.	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
Ledus.S4	AUGUSTUS	start_codon	11680712	11680714	.	-	0	transcript_id "Ledus.S4G155900.t1"; gene_id "Ledus.S4G155900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13123.t1 is derived from g6933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6440523	6440831	.	+	.	Ledus.S6G018500
Ledus.S6	AUGUSTUS	transcript	6440523	6440831	.	+	.	transcript_id "Ledus.S6G018500.t1"; gene_id "Ledus.S6G018500"
Ledus.S6	AUGUSTUS	start_codon	6440523	6440525	.	+	0	transcript_id "Ledus.S6G018500.t1"; gene_id "Ledus.S6G018500"
Ledus.S6	AUGUSTUS	CDS	6440523	6440831	0.83	+	0	transcript_id "Ledus.S6G018500.t1"; gene_id "Ledus.S6G018500"
Ledus.S6	AUGUSTUS	exon	6440523	6440831	.	+	.	transcript_id "Ledus.S6G018500.t1"; gene_id "Ledus.S6G018500"
Ledus.S6	AUGUSTUS	stop_codon	6440832	6440834	.	+	0	transcript_id "Ledus.S6G018500.t1"; gene_id "Ledus.S6G018500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8330.t1 is derived from g13002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10788158	10789236	.	+	.	Ledus.S5G110800
Ledus.S5	AUGUSTUS	transcript	10788158	10789236	.	+	.	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	start_codon	10788158	10788160	.	+	0	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	CDS	10788158	10788440	0.91	+	0	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	exon	10788158	10788440	.	+	.	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	intron	10788441	10788527	.	+	.	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	CDS	10788528	10788627	1	+	2	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	exon	10788528	10788627	.	+	.	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	intron	10788628	10788714	.	+	.	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	CDS	10788715	10788894	0.99	+	1	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	exon	10788715	10788894	.	+	.	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	intron	10788895	10788970	.	+	.	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	CDS	10788971	10789088	1	+	1	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	exon	10788971	10789088	.	+	.	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	intron	10789089	10789176	.	+	.	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	CDS	10789177	10789236	1	+	0	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	exon	10789177	10789236	.	+	.	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
Ledus.S5	AUGUSTUS	stop_codon	10789237	10789239	.	+	0	transcript_id "Ledus.S5G110800.t1"; gene_id "Ledus.S5G110800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4133.t1 is derived from g1569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14879179	14881125	.	+	.	Ledus.S1G155400
Ledus.S1	AUGUSTUS	transcript	14879179	14881125	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	start_codon	14879179	14879181	.	+	0	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	CDS	14879179	14879294	0.97	+	0	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	exon	14879179	14879294	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	intron	14879295	14879496	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	CDS	14879497	14879647	1	+	1	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	exon	14879497	14879647	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	intron	14879648	14879722	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	CDS	14879723	14879775	1	+	0	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	exon	14879723	14879775	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	intron	14879776	14879855	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	CDS	14879856	14879892	1	+	1	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	exon	14879856	14879892	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	intron	14879893	14879972	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	CDS	14879973	14880044	1	+	0	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	exon	14879973	14880044	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	intron	14880045	14880135	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	CDS	14880136	14880261	1	+	0	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	exon	14880136	14880261	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	intron	14880262	14880350	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	CDS	14880351	14880507	1	+	0	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	exon	14880351	14880507	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	intron	14880508	14880586	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	CDS	14880587	14880663	1	+	2	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	exon	14880587	14880663	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	intron	14880664	14880807	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	CDS	14880808	14880860	0.89	+	0	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	exon	14880808	14880860	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	intron	14880861	14880954	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	CDS	14880955	14880959	0.89	+	1	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	exon	14880955	14880959	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	intron	14880960	14881090	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	CDS	14881091	14881125	0.89	+	2	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	exon	14881091	14881125	.	+	.	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
Ledus.S1	AUGUSTUS	stop_codon	14881126	14881128	.	+	0	transcript_id "Ledus.S1G155400.t1"; gene_id "Ledus.S1G155400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg80.t1 is derived from g9493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	287860	288599	.	-	.	Ledus.C8G004000
Ledus.C8	AUGUSTUS	transcript	287860	288599	.	-	.	transcript_id "Ledus.C8G004000.t1"; gene_id "Ledus.C8G004000"
Ledus.C8	AUGUSTUS	stop_codon	287857	287859	.	-	0	transcript_id "Ledus.C8G004000.t1"; gene_id "Ledus.C8G004000"
Ledus.C8	AUGUSTUS	CDS	287860	287891	0.64	-	2	transcript_id "Ledus.C8G004000.t1"; gene_id "Ledus.C8G004000"
Ledus.C8	AUGUSTUS	exon	287860	287891	.	-	.	transcript_id "Ledus.C8G004000.t1"; gene_id "Ledus.C8G004000"
Ledus.C8	AUGUSTUS	intron	287892	288076	.	-	.	transcript_id "Ledus.C8G004000.t1"; gene_id "Ledus.C8G004000"
Ledus.C8	AUGUSTUS	CDS	288077	288599	0.66	-	0	transcript_id "Ledus.C8G004000.t1"; gene_id "Ledus.C8G004000"
Ledus.C8	AUGUSTUS	exon	288077	288599	.	-	.	transcript_id "Ledus.C8G004000.t1"; gene_id "Ledus.C8G004000"
Ledus.C8	AUGUSTUS	start_codon	288597	288599	.	-	0	transcript_id "Ledus.C8G004000.t1"; gene_id "Ledus.C8G004000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg180.t1 is derived from g7041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	558821	563174	.	+	.	Ledus.S2G006200
Ledus.S2	AUGUSTUS	transcript	558821	563174	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	start_codon	558821	558823	.	+	0	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	CDS	558821	559939	0.73	+	0	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	exon	558821	559939	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	intron	559940	560028	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	CDS	560029	561128	1	+	0	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	exon	560029	561128	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	intron	561129	561557	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	CDS	561558	561669	0.91	+	1	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	exon	561558	561669	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	intron	561670	561760	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	CDS	561761	561819	0.56	+	0	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	exon	561761	561819	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	intron	561820	562594	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	CDS	562595	562738	0.36	+	1	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	exon	562595	562738	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	intron	562739	562909	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	CDS	562910	562949	0.68	+	1	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	exon	562910	562949	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	intron	562950	563102	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	CDS	563103	563174	0.67	+	0	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	exon	563103	563174	.	+	.	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
Ledus.S2	AUGUSTUS	stop_codon	563175	563177	.	+	0	transcript_id "Ledus.S2G006200.t1"; gene_id "Ledus.S2G006200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11249.t1 is derived from g4867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2930270	2934116	.	+	.	Ledus.S4G040500
Ledus.S4	AUGUSTUS	transcript	2930270	2934116	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	start_codon	2930270	2930272	.	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2930270	2930327	1	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2930270	2930327	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2930328	2930421	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2930422	2930477	1	+	2	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2930422	2930477	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2930478	2930567	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2930568	2930664	1	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2930568	2930664	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2930665	2930740	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2930741	2930763	0.89	+	2	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2930741	2930763	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2930764	2930969	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2930970	2931085	1	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2930970	2931085	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2931086	2931172	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2931173	2931239	1	+	1	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2931173	2931239	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2931240	2931380	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2931381	2931422	1	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2931381	2931422	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2931423	2931514	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2931515	2931556	1	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2931515	2931556	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2931557	2931701	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2931702	2931778	0.96	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2931702	2931778	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2931779	2931898	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2931899	2932025	0.8	+	1	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2931899	2932025	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2932026	2932130	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2932131	2932298	0.99	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2932131	2932298	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2932299	2932460	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2932461	2932586	0.99	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2932461	2932586	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2932587	2932696	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2932697	2932807	1	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2932697	2932807	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2932808	2932904	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2932905	2933039	1	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2932905	2933039	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2933040	2933289	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2933290	2933364	1	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2933290	2933364	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2933365	2933442	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2933443	2933550	1	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2933443	2933550	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2933551	2933648	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2933649	2933744	0.99	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2933649	2933744	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2933745	2933858	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2933859	2933942	0.99	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2933859	2933942	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	intron	2933943	2934026	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	CDS	2934027	2934116	0.6	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	exon	2934027	2934116	.	+	.	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
Ledus.S4	AUGUSTUS	stop_codon	2934117	2934119	.	+	0	transcript_id "Ledus.S4G040500.t1"; gene_id "Ledus.S4G040500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3193.t1 is derived from g628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6680688	6681204	.	-	.	Ledus.S1G061400
Ledus.S1	AUGUSTUS	transcript	6680688	6681204	.	-	.	transcript_id "Ledus.S1G061400.t1"; gene_id "Ledus.S1G061400"
Ledus.S1	AUGUSTUS	stop_codon	6680685	6680687	.	-	0	transcript_id "Ledus.S1G061400.t1"; gene_id "Ledus.S1G061400"
Ledus.S1	AUGUSTUS	CDS	6680688	6680722	0.93	-	2	transcript_id "Ledus.S1G061400.t1"; gene_id "Ledus.S1G061400"
Ledus.S1	AUGUSTUS	exon	6680688	6680722	.	-	.	transcript_id "Ledus.S1G061400.t1"; gene_id "Ledus.S1G061400"
Ledus.S1	AUGUSTUS	intron	6680723	6680825	.	-	.	transcript_id "Ledus.S1G061400.t1"; gene_id "Ledus.S1G061400"
Ledus.S1	AUGUSTUS	CDS	6680826	6681204	0.97	-	0	transcript_id "Ledus.S1G061400.t1"; gene_id "Ledus.S1G061400"
Ledus.S1	AUGUSTUS	exon	6680826	6681204	.	-	.	transcript_id "Ledus.S1G061400.t1"; gene_id "Ledus.S1G061400"
Ledus.S1	AUGUSTUS	start_codon	6681202	6681204	.	-	0	transcript_id "Ledus.S1G061400.t1"; gene_id "Ledus.S1G061400"
# This transcript jg12076.t2 is derived from g5695.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12077.t1 is derived from g5696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9383637	9384779	.	-	.	Ledus.S4G123300
Ledus.S4	AUGUSTUS	transcript	9383637	9384779	.	-	.	transcript_id "Ledus.S4G123300.t1"; gene_id "Ledus.S4G123300"
Ledus.S4	AUGUSTUS	stop_codon	9383634	9383636	.	-	0	transcript_id "Ledus.S4G123300.t1"; gene_id "Ledus.S4G123300"
Ledus.S4	AUGUSTUS	CDS	9383637	9383822	0.96	-	0	transcript_id "Ledus.S4G123300.t1"; gene_id "Ledus.S4G123300"
Ledus.S4	AUGUSTUS	exon	9383637	9383822	.	-	.	transcript_id "Ledus.S4G123300.t1"; gene_id "Ledus.S4G123300"
Ledus.S4	AUGUSTUS	intron	9383823	9384011	.	-	.	transcript_id "Ledus.S4G123300.t1"; gene_id "Ledus.S4G123300"
Ledus.S4	AUGUSTUS	CDS	9384012	9384319	0.99	-	2	transcript_id "Ledus.S4G123300.t1"; gene_id "Ledus.S4G123300"
Ledus.S4	AUGUSTUS	exon	9384012	9384319	.	-	.	transcript_id "Ledus.S4G123300.t1"; gene_id "Ledus.S4G123300"
Ledus.S4	AUGUSTUS	intron	9384320	9384487	.	-	.	transcript_id "Ledus.S4G123300.t1"; gene_id "Ledus.S4G123300"
Ledus.S4	AUGUSTUS	CDS	9384488	9384779	0.85	-	0	transcript_id "Ledus.S4G123300.t1"; gene_id "Ledus.S4G123300"
Ledus.S4	AUGUSTUS	exon	9384488	9384779	.	-	.	transcript_id "Ledus.S4G123300.t1"; gene_id "Ledus.S4G123300"
Ledus.S4	AUGUSTUS	start_codon	9384777	9384779	.	-	0	transcript_id "Ledus.S4G123300.t1"; gene_id "Ledus.S4G123300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9463.t1 is derived from g10493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7150731	7154074	.	-	.	Ledus.S3G094000
Ledus.S3	AUGUSTUS	transcript	7150731	7154074	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	stop_codon	7150728	7150730	.	-	0	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	CDS	7150731	7150892	0.98	-	0	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	exon	7150731	7150892	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	intron	7150893	7150984	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	CDS	7150985	7151195	1	-	1	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	exon	7150985	7151195	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	intron	7151196	7151309	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	CDS	7151310	7151467	0.98	-	0	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	exon	7151310	7151467	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	intron	7151468	7151615	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	CDS	7151616	7151702	1	-	0	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	exon	7151616	7151702	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	intron	7151703	7151812	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	CDS	7151813	7152003	0.99	-	2	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	exon	7151813	7152003	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	intron	7152004	7152116	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	CDS	7152117	7152292	0.95	-	1	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	exon	7152117	7152292	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	intron	7152293	7152372	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	CDS	7152373	7152488	1	-	0	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	exon	7152373	7152488	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	intron	7152489	7152566	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	CDS	7152567	7153116	1	-	1	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	exon	7152567	7153116	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	intron	7153117	7153268	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	CDS	7153269	7154074	0.97	-	0	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	exon	7153269	7154074	.	-	.	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
Ledus.S3	AUGUSTUS	start_codon	7154072	7154074	.	-	0	transcript_id "Ledus.S3G094000.t1"; gene_id "Ledus.S3G094000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3063.t1 is derived from g498.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5611715	5612295	.	-	.	Ledus.S1G048400
Ledus.S1	AUGUSTUS	transcript	5611715	5612295	.	-	.	transcript_id "Ledus.S1G048400.t1"; gene_id "Ledus.S1G048400"
Ledus.S1	AUGUSTUS	stop_codon	5611712	5611714	.	-	0	transcript_id "Ledus.S1G048400.t1"; gene_id "Ledus.S1G048400"
Ledus.S1	AUGUSTUS	CDS	5611715	5611738	0.99	-	0	transcript_id "Ledus.S1G048400.t1"; gene_id "Ledus.S1G048400"
Ledus.S1	AUGUSTUS	exon	5611715	5611738	.	-	.	transcript_id "Ledus.S1G048400.t1"; gene_id "Ledus.S1G048400"
Ledus.S1	AUGUSTUS	intron	5611739	5611945	.	-	.	transcript_id "Ledus.S1G048400.t1"; gene_id "Ledus.S1G048400"
Ledus.S1	AUGUSTUS	CDS	5611946	5612148	0.79	-	2	transcript_id "Ledus.S1G048400.t1"; gene_id "Ledus.S1G048400"
Ledus.S1	AUGUSTUS	exon	5611946	5612148	.	-	.	transcript_id "Ledus.S1G048400.t1"; gene_id "Ledus.S1G048400"
Ledus.S1	AUGUSTUS	intron	5612149	5612288	.	-	.	transcript_id "Ledus.S1G048400.t1"; gene_id "Ledus.S1G048400"
Ledus.S1	AUGUSTUS	CDS	5612289	5612295	0.98	-	0	transcript_id "Ledus.S1G048400.t1"; gene_id "Ledus.S1G048400"
Ledus.S1	AUGUSTUS	exon	5612289	5612295	.	-	.	transcript_id "Ledus.S1G048400.t1"; gene_id "Ledus.S1G048400"
Ledus.S1	AUGUSTUS	start_codon	5612293	5612295	.	-	0	transcript_id "Ledus.S1G048400.t1"; gene_id "Ledus.S1G048400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4693.t1 is derived from g2131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19064831	19077156	.	-	.	Ledus.S1G211400
Ledus.S1	AUGUSTUS	transcript	19064831	19077156	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	stop_codon	19064828	19064830	.	-	0	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19064831	19064968	1	-	0	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19064831	19064968	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19064969	19065057	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19065058	19065156	0.64	-	0	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19065058	19065156	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19065157	19065254	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19065255	19065387	0.96	-	1	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19065255	19065387	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19065388	19065474	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19065475	19065748	1	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19065475	19065748	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19065749	19065848	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19065849	19065975	1	-	0	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19065849	19065975	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19065976	19066406	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19066407	19066645	1	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19066407	19066645	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19066646	19066774	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19066775	19066844	0.88	-	0	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19066775	19066844	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19066845	19066918	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19066919	19067252	0.41	-	1	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19066919	19067252	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19067253	19067467	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19067468	19067769	0.77	-	0	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19067468	19067769	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19067770	19067855	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19067856	19067960	1	-	0	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19067856	19067960	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19067961	19068044	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19068045	19068232	0.92	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19068045	19068232	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19068233	19068328	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19068329	19068476	0.92	-	0	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19068329	19068476	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19068477	19068560	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19068561	19068799	1	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19068561	19068799	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19068800	19068878	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19068879	19069099	1	-	1	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19068879	19069099	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19069100	19069196	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19069197	19069433	0.76	-	1	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19069197	19069433	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19069434	19069524	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19069525	19069672	0.55	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19069525	19069672	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19069673	19069763	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19069764	19070051	0.35	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19069764	19070051	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19070052	19070183	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19070184	19070507	0.8	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19070184	19070507	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19070508	19070594	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19070595	19070915	0.96	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19070595	19070915	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19070916	19070998	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19070999	19071310	1	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19070999	19071310	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19071311	19071387	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19071388	19071729	0.98	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19071388	19071729	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19071730	19071823	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19071824	19072174	1	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19071824	19072174	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19072175	19072304	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19072305	19072607	0.48	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19072305	19072607	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19072608	19072695	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19072696	19072743	0.99	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19072696	19072743	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19072744	19072841	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19072842	19073195	0.96	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19072842	19073195	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19073196	19073277	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19073278	19073637	0.97	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19073278	19073637	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19073638	19073734	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19073735	19074073	0.71	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19073735	19074073	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19074074	19074173	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19074174	19074533	0.74	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19074174	19074533	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19074534	19074621	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19074622	19074738	0.99	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19074622	19074738	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19074739	19074834	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19074835	19075065	0.87	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19074835	19075065	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19075066	19075160	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19075161	19075490	0.9	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19075161	19075490	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19075491	19075579	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19075580	19075909	1	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19075580	19075909	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19075910	19076002	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19076003	19076353	0.99	-	2	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19076003	19076353	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	intron	19076354	19076426	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	CDS	19076427	19077156	0.29	-	0	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	exon	19076427	19077156	.	-	.	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
Ledus.S1	AUGUSTUS	start_codon	19077154	19077156	.	-	0	transcript_id "Ledus.S1G211400.t1"; gene_id "Ledus.S1G211400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2657.t1 is derived from g90.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1231231	1231763	.	-	.	Ledus.S1G007800
Ledus.S1	AUGUSTUS	transcript	1231231	1231763	.	-	.	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	stop_codon	1231228	1231230	.	-	0	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	CDS	1231231	1231282	0.95	-	1	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	exon	1231231	1231282	.	-	.	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	intron	1231283	1231374	.	-	.	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	CDS	1231375	1231465	1	-	2	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	exon	1231375	1231465	.	-	.	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	intron	1231466	1231545	.	-	.	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	CDS	1231546	1231622	1	-	1	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	exon	1231546	1231622	.	-	.	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	intron	1231623	1231722	.	-	.	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	CDS	1231723	1231763	0.99	-	0	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	exon	1231723	1231763	.	-	.	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
Ledus.S1	AUGUSTUS	start_codon	1231761	1231763	.	-	0	transcript_id "Ledus.S1G007800.t1"; gene_id "Ledus.S1G007800"
# This transcript jg13121.t2 is derived from g6931.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg13121.t3 is derived from g6931.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg13121.t4 is derived from g6931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg13121.t5 is derived from g6931.t5 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13122.t1 is derived from g6932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6425230	6425550	.	+	.	Ledus.S6G018400
Ledus.S6	AUGUSTUS	transcript	6425230	6425550	.	+	.	transcript_id "Ledus.S6G018400.t1"; gene_id "Ledus.S6G018400"
Ledus.S6	AUGUSTUS	start_codon	6425230	6425232	.	+	0	transcript_id "Ledus.S6G018400.t1"; gene_id "Ledus.S6G018400"
Ledus.S6	AUGUSTUS	CDS	6425230	6425550	0.97	+	0	transcript_id "Ledus.S6G018400.t1"; gene_id "Ledus.S6G018400"
Ledus.S6	AUGUSTUS	exon	6425230	6425550	.	+	.	transcript_id "Ledus.S6G018400.t1"; gene_id "Ledus.S6G018400"
Ledus.S6	AUGUSTUS	stop_codon	6425551	6425553	.	+	0	transcript_id "Ledus.S6G018400.t1"; gene_id "Ledus.S6G018400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8615.t1 is derived from g9645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	667436	670546	.	+	.	Ledus.S3G009200
Ledus.S3	AUGUSTUS	transcript	667436	670546	.	+	.	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	start_codon	667436	667438	.	+	0	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	CDS	667436	670019	0.98	+	0	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	exon	667436	670019	.	+	.	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	intron	670020	670171	.	+	.	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	CDS	670172	670180	1	+	2	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	exon	670172	670180	.	+	.	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	intron	670181	670256	.	+	.	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	CDS	670257	670353	0.98	+	2	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	exon	670257	670353	.	+	.	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	intron	670354	670527	.	+	.	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	CDS	670528	670546	1	+	1	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	exon	670528	670546	.	+	.	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
Ledus.S3	AUGUSTUS	stop_codon	670547	670549	.	+	0	transcript_id "Ledus.S3G009200.t1"; gene_id "Ledus.S3G009200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1830.t1 is derived from g8693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12845607	12846431	.	-	.	Ledus.S2G171200
Ledus.S2	AUGUSTUS	transcript	12845607	12846431	.	-	.	transcript_id "Ledus.S2G171200.t1"; gene_id "Ledus.S2G171200"
Ledus.S2	AUGUSTUS	stop_codon	12845604	12845606	.	-	0	transcript_id "Ledus.S2G171200.t1"; gene_id "Ledus.S2G171200"
Ledus.S2	AUGUSTUS	CDS	12845607	12846431	0.96	-	0	transcript_id "Ledus.S2G171200.t1"; gene_id "Ledus.S2G171200"
Ledus.S2	AUGUSTUS	exon	12845607	12846431	.	-	.	transcript_id "Ledus.S2G171200.t1"; gene_id "Ledus.S2G171200"
Ledus.S2	AUGUSTUS	start_codon	12846429	12846431	.	-	0	transcript_id "Ledus.S2G171200.t1"; gene_id "Ledus.S2G171200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5595.t1 is derived from g3034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25310909	25313532	.	+	.	Ledus.S1G301600
Ledus.S1	AUGUSTUS	transcript	25310909	25313532	.	+	.	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	start_codon	25310909	25310911	.	+	0	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	CDS	25310909	25311158	0.95	+	0	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	exon	25310909	25311158	.	+	.	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	intron	25311159	25311299	.	+	.	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	CDS	25311300	25311451	1	+	2	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	exon	25311300	25311451	.	+	.	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	intron	25311452	25311546	.	+	.	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	CDS	25311547	25312849	1	+	0	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	exon	25311547	25312849	.	+	.	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	intron	25312850	25313032	.	+	.	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	CDS	25313033	25313532	1	+	2	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	exon	25313033	25313532	.	+	.	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
Ledus.S1	AUGUSTUS	stop_codon	25313533	25313535	.	+	0	transcript_id "Ledus.S1G301600.t1"; gene_id "Ledus.S1G301600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3511.t1 is derived from g946.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8974094	8976002	.	+	.	Ledus.S1G093200
Ledus.S1	AUGUSTUS	transcript	8974094	8976002	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	start_codon	8974094	8974096	.	+	0	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	CDS	8974094	8974205	0.65	+	0	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	exon	8974094	8974205	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	intron	8974206	8974314	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	CDS	8974315	8974414	0.96	+	2	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	exon	8974315	8974414	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	intron	8974415	8974494	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	CDS	8974495	8974630	1	+	1	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	exon	8974495	8974630	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	intron	8974631	8974785	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	CDS	8974786	8974913	1	+	0	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	exon	8974786	8974913	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	intron	8974914	8974994	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	CDS	8974995	8975142	1	+	1	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	exon	8974995	8975142	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	intron	8975143	8975240	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	CDS	8975241	8975346	1	+	0	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	exon	8975241	8975346	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	intron	8975347	8975438	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	CDS	8975439	8975488	1	+	2	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	exon	8975439	8975488	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	intron	8975489	8975570	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	CDS	8975571	8975627	1	+	0	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	exon	8975571	8975627	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	intron	8975628	8975702	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	CDS	8975703	8975812	1	+	0	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	exon	8975703	8975812	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	intron	8975813	8975947	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	CDS	8975948	8976002	1	+	1	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	exon	8975948	8976002	.	+	.	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
Ledus.S1	AUGUSTUS	stop_codon	8976003	8976005	.	+	0	transcript_id "Ledus.S1G093200.t1"; gene_id "Ledus.S1G093200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg702.t1 is derived from g7563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4322890	4326265	.	-	.	Ledus.S2G058400
Ledus.S2	AUGUSTUS	transcript	4322890	4326265	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	stop_codon	4322887	4322889	.	-	0	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	CDS	4322890	4323528	1	-	0	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	exon	4322890	4323528	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	intron	4323529	4323612	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	CDS	4323613	4323782	0.94	-	2	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	exon	4323613	4323782	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	intron	4323783	4324073	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	CDS	4324074	4324182	0.55	-	0	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	exon	4324074	4324182	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	intron	4324183	4324273	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	CDS	4324274	4324719	1	-	2	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	exon	4324274	4324719	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	intron	4324720	4324802	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	CDS	4324803	4325132	0.62	-	2	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	exon	4324803	4325132	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	intron	4325133	4325251	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	CDS	4325252	4325504	1	-	0	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	exon	4325252	4325504	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	intron	4325505	4325636	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	CDS	4325637	4325804	1	-	0	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	exon	4325637	4325804	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	intron	4325805	4326007	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	CDS	4326008	4326265	1	-	0	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	exon	4326008	4326265	.	-	.	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
Ledus.S2	AUGUSTUS	start_codon	4326263	4326265	.	-	0	transcript_id "Ledus.S2G058400.t1"; gene_id "Ledus.S2G058400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4781.t1 is derived from g2219.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19749543	19756140	.	-	.	Ledus.S1G220200
Ledus.S1	AUGUSTUS	transcript	19749543	19756140	.	-	.	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	stop_codon	19749540	19749542	.	-	0	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	CDS	19749543	19750721	1	-	0	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	exon	19749543	19750721	.	-	.	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	intron	19750722	19751291	.	-	.	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	CDS	19751292	19751317	0.06	-	2	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	exon	19751292	19751317	.	-	.	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	intron	19751318	19754928	.	-	.	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	CDS	19754929	19755617	0.71	-	1	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	exon	19754929	19755617	.	-	.	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	intron	19755618	19755976	.	-	.	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	CDS	19755977	19756140	0.09	-	0	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	exon	19755977	19756140	.	-	.	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
Ledus.S1	AUGUSTUS	start_codon	19756138	19756140	.	-	0	transcript_id "Ledus.S1G220200.t1"; gene_id "Ledus.S1G220200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1384.t1 is derived from g8245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9717171	9721403	.	+	.	Ledus.S2G126600
Ledus.S2	AUGUSTUS	transcript	9717171	9721403	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	start_codon	9717171	9717173	.	+	0	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	CDS	9717171	9717454	0.66	+	0	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	exon	9717171	9717454	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	intron	9717455	9717588	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	CDS	9717589	9717805	1	+	1	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	exon	9717589	9717805	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	intron	9717806	9717900	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	CDS	9717901	9717993	1	+	0	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	exon	9717901	9717993	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	intron	9717994	9718139	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	CDS	9718140	9718247	1	+	0	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	exon	9718140	9718247	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	intron	9718248	9718404	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	CDS	9718405	9718578	0.4	+	0	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	exon	9718405	9718578	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	intron	9718579	9718685	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	CDS	9718686	9718774	1	+	0	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	exon	9718686	9718774	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	intron	9718775	9718938	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	CDS	9718939	9719060	1	+	1	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	exon	9718939	9719060	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	intron	9719061	9719169	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	CDS	9719170	9719357	0.99	+	2	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	exon	9719170	9719357	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	intron	9719358	9719523	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	CDS	9719524	9719817	1	+	0	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	exon	9719524	9719817	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	intron	9719818	9719916	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	CDS	9719917	9720064	1	+	0	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	exon	9719917	9720064	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	intron	9720065	9720239	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	CDS	9720240	9720748	0.65	+	2	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	exon	9720240	9720748	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	intron	9720749	9721280	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	CDS	9721281	9721403	0.44	+	0	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	exon	9721281	9721403	.	+	.	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
Ledus.S2	AUGUSTUS	stop_codon	9721404	9721406	.	+	0	transcript_id "Ledus.S2G126600.t1"; gene_id "Ledus.S2G126600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg451.t1 is derived from g7312.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2665876	2666571	.	+	.	Ledus.S2G033300
Ledus.S2	AUGUSTUS	transcript	2665876	2666571	.	+	.	transcript_id "Ledus.S2G033300.t1"; gene_id "Ledus.S2G033300"
Ledus.S2	AUGUSTUS	start_codon	2665876	2665878	.	+	0	transcript_id "Ledus.S2G033300.t1"; gene_id "Ledus.S2G033300"
Ledus.S2	AUGUSTUS	CDS	2665876	2666056	0.32	+	0	transcript_id "Ledus.S2G033300.t1"; gene_id "Ledus.S2G033300"
Ledus.S2	AUGUSTUS	exon	2665876	2666056	.	+	.	transcript_id "Ledus.S2G033300.t1"; gene_id "Ledus.S2G033300"
Ledus.S2	AUGUSTUS	intron	2666057	2666152	.	+	.	transcript_id "Ledus.S2G033300.t1"; gene_id "Ledus.S2G033300"
Ledus.S2	AUGUSTUS	CDS	2666153	2666571	0.32	+	2	transcript_id "Ledus.S2G033300.t1"; gene_id "Ledus.S2G033300"
Ledus.S2	AUGUSTUS	exon	2666153	2666571	.	+	.	transcript_id "Ledus.S2G033300.t1"; gene_id "Ledus.S2G033300"
Ledus.S2	AUGUSTUS	stop_codon	2666572	2666574	.	+	0	transcript_id "Ledus.S2G033300.t1"; gene_id "Ledus.S2G033300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1313.t1 is derived from g8174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9216888	9218394	.	+	.	Ledus.S2G119500
Ledus.S2	AUGUSTUS	transcript	9216888	9218394	.	+	.	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	start_codon	9216888	9216890	.	+	0	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	CDS	9216888	9217031	0.94	+	0	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	exon	9216888	9217031	.	+	.	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	intron	9217032	9217227	.	+	.	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	CDS	9217228	9217469	1	+	0	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	exon	9217228	9217469	.	+	.	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	intron	9217470	9217550	.	+	.	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	CDS	9217551	9217706	0.95	+	1	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	exon	9217551	9217706	.	+	.	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	intron	9217707	9217820	.	+	.	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	CDS	9217821	9218006	0.99	+	1	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	exon	9217821	9218006	.	+	.	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	intron	9218007	9218098	.	+	.	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	CDS	9218099	9218280	1	+	1	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	exon	9218099	9218280	.	+	.	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	intron	9218281	9218371	.	+	.	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	CDS	9218372	9218394	1	+	2	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	exon	9218372	9218394	.	+	.	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
Ledus.S2	AUGUSTUS	stop_codon	9218395	9218397	.	+	0	transcript_id "Ledus.S2G119500.t1"; gene_id "Ledus.S2G119500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5484.t1 is derived from g2923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24489277	24491741	.	-	.	Ledus.S1G290500
Ledus.S1	AUGUSTUS	transcript	24489277	24491741	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	stop_codon	24489274	24489276	.	-	0	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	CDS	24489277	24489457	0.9	-	1	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	exon	24489277	24489457	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	intron	24489458	24489543	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	CDS	24489544	24489707	1	-	0	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	exon	24489544	24489707	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	intron	24489708	24489783	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	CDS	24489784	24489912	1	-	0	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	exon	24489784	24489912	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	intron	24489913	24489992	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	CDS	24489993	24490135	1	-	2	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	exon	24489993	24490135	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	intron	24490136	24490214	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	CDS	24490215	24490332	1	-	0	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	exon	24490215	24490332	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	intron	24490333	24490415	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	CDS	24490416	24490490	1	-	0	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	exon	24490416	24490490	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	intron	24490491	24490561	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	CDS	24490562	24490654	1	-	0	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	exon	24490562	24490654	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	intron	24490655	24490741	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	CDS	24490742	24490868	1	-	1	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	exon	24490742	24490868	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	intron	24490869	24490959	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	CDS	24490960	24491048	1	-	0	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	exon	24490960	24491048	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	intron	24491049	24491139	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	CDS	24491140	24491235	1	-	0	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	exon	24491140	24491235	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	intron	24491236	24491320	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	CDS	24491321	24491511	1	-	2	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	exon	24491321	24491511	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	intron	24491512	24491578	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	CDS	24491579	24491741	0.98	-	0	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	exon	24491579	24491741	.	-	.	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
Ledus.S1	AUGUSTUS	start_codon	24491739	24491741	.	-	0	transcript_id "Ledus.S1G290500.t1"; gene_id "Ledus.S1G290500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8667.t1 is derived from g9697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1283765	1289001	.	+	.	Ledus.S3G014400
Ledus.S3	AUGUSTUS	transcript	1283765	1289001	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	start_codon	1283765	1283767	.	+	0	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1283765	1285006	1	+	0	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1283765	1285006	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1285007	1285239	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1285240	1285521	0.98	+	0	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1285240	1285521	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1285522	1285641	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1285642	1285838	0.99	+	0	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1285642	1285838	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1285839	1285980	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1285981	1286122	1	+	1	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1285981	1286122	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1286123	1286673	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1286674	1286934	0.95	+	0	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1286674	1286934	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1286935	1287082	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1287083	1287155	1	+	0	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1287083	1287155	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1287156	1287275	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1287276	1287324	0.92	+	2	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1287276	1287324	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1287325	1287412	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1287413	1287635	1	+	1	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1287413	1287635	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1287636	1287726	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1287727	1287782	1	+	0	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1287727	1287782	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1287783	1287959	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1287960	1288028	1	+	1	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1287960	1288028	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1288029	1288263	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1288264	1288375	1	+	1	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1288264	1288375	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1288376	1288556	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1288557	1288646	1	+	0	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1288557	1288646	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1288647	1288730	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1288731	1288901	1	+	0	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1288731	1288901	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	intron	1288902	1288977	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	CDS	1288978	1289001	0.99	+	0	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	exon	1288978	1289001	.	+	.	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
Ledus.S3	AUGUSTUS	stop_codon	1289002	1289004	.	+	0	transcript_id "Ledus.S3G014400.t1"; gene_id "Ledus.S3G014400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4457.t1 is derived from g1893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17180353	17180760	.	-	.	Ledus.S1G187800
Ledus.S1	AUGUSTUS	transcript	17180353	17180760	.	-	.	transcript_id "Ledus.S1G187800.t1"; gene_id "Ledus.S1G187800"
Ledus.S1	AUGUSTUS	stop_codon	17180350	17180352	.	-	0	transcript_id "Ledus.S1G187800.t1"; gene_id "Ledus.S1G187800"
Ledus.S1	AUGUSTUS	CDS	17180353	17180760	1	-	0	transcript_id "Ledus.S1G187800.t1"; gene_id "Ledus.S1G187800"
Ledus.S1	AUGUSTUS	exon	17180353	17180760	.	-	.	transcript_id "Ledus.S1G187800.t1"; gene_id "Ledus.S1G187800"
Ledus.S1	AUGUSTUS	start_codon	17180758	17180760	.	-	0	transcript_id "Ledus.S1G187800.t1"; gene_id "Ledus.S1G187800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6435.t1 is derived from g3878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31234764	31237640	.	-	.	Ledus.S1G385600
Ledus.S1	AUGUSTUS	transcript	31234764	31237640	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	stop_codon	31234761	31234763	.	-	0	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	CDS	31234764	31235012	0.93	-	0	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	exon	31234764	31235012	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	intron	31235013	31235128	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	CDS	31235129	31235254	1	-	0	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	exon	31235129	31235254	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	intron	31235255	31235385	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	CDS	31235386	31235463	1	-	0	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	exon	31235386	31235463	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	intron	31235464	31235667	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	CDS	31235668	31235999	0.9	-	2	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	exon	31235668	31235999	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	intron	31236000	31236131	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	CDS	31236132	31236171	1	-	0	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	exon	31236132	31236171	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	intron	31236172	31236269	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	CDS	31236270	31236327	1	-	1	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	exon	31236270	31236327	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	intron	31236328	31236510	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	CDS	31236511	31236650	1	-	0	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	exon	31236511	31236650	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	intron	31236651	31236787	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	CDS	31236788	31236847	1	-	0	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	exon	31236788	31236847	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	intron	31236848	31236966	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	CDS	31236967	31237056	1	-	0	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	exon	31236967	31237056	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	intron	31237057	31237144	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	CDS	31237145	31237240	1	-	0	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	exon	31237145	31237240	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	intron	31237241	31237351	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	CDS	31237352	31237426	1	-	0	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	exon	31237352	31237426	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	intron	31237427	31237598	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	CDS	31237599	31237640	1	-	0	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	exon	31237599	31237640	.	-	.	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
Ledus.S1	AUGUSTUS	start_codon	31237638	31237640	.	-	0	transcript_id "Ledus.S1G385600.t1"; gene_id "Ledus.S1G385600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1103.t1 is derived from g7964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7530880	7536395	.	-	.	Ledus.S2G098500
Ledus.S2	AUGUSTUS	transcript	7530880	7536395	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	stop_codon	7530877	7530879	.	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7530880	7531374	0.62	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7530880	7531374	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7531375	7531457	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7531458	7531774	1	-	2	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7531458	7531774	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7531775	7531971	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7531972	7532067	1	-	2	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7531972	7532067	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7532068	7532283	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7532284	7532436	1	-	2	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7532284	7532436	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7532437	7532588	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7532589	7532658	1	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7532589	7532658	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7532659	7532767	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7532768	7532867	0.99	-	1	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7532768	7532867	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7532868	7532984	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7532985	7533111	0.99	-	2	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7532985	7533111	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7533112	7533236	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7533237	7533319	0.8	-	1	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7533237	7533319	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7533320	7533460	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7533461	7533569	0.76	-	2	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7533461	7533569	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7533570	7533687	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7533688	7533748	1	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7533688	7533748	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7533749	7533821	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7533822	7533914	1	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7533822	7533914	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7533915	7534153	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7534154	7534228	1	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7534154	7534228	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7534229	7534332	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7534333	7534406	0.96	-	2	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7534333	7534406	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7534407	7534509	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7534510	7534623	0.98	-	2	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7534510	7534623	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7534624	7534722	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7534723	7534855	1	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7534723	7534855	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7534856	7535007	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7535008	7535142	1	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7535008	7535142	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7535143	7535335	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7535336	7535692	1	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7535336	7535692	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7535693	7535799	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7535800	7535898	0.72	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7535800	7535898	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7535899	7536039	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7536040	7536177	0.47	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7536040	7536177	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	intron	7536178	7536323	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	CDS	7536324	7536395	0.36	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	exon	7536324	7536395	.	-	.	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
Ledus.S2	AUGUSTUS	start_codon	7536393	7536395	.	-	0	transcript_id "Ledus.S2G098500.t1"; gene_id "Ledus.S2G098500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4508.t1 is derived from g1944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17415689	17416712	.	-	.	Ledus.S1G192900
Ledus.S1	AUGUSTUS	transcript	17415689	17416712	.	-	.	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	stop_codon	17415686	17415688	.	-	0	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	CDS	17415689	17415731	0.93	-	1	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	exon	17415689	17415731	.	-	.	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	intron	17415732	17416150	.	-	.	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	CDS	17416151	17416399	0.49	-	1	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	exon	17416151	17416399	.	-	.	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	intron	17416400	17416475	.	-	.	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	CDS	17416476	17416565	0.38	-	1	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	exon	17416476	17416565	.	-	.	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	intron	17416566	17416680	.	-	.	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	CDS	17416681	17416712	0.51	-	0	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	exon	17416681	17416712	.	-	.	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
Ledus.S1	AUGUSTUS	start_codon	17416710	17416712	.	-	0	transcript_id "Ledus.S1G192900.t1"; gene_id "Ledus.S1G192900"
# This transcript jg3475.t2 is derived from g910.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3476.t1 is derived from g911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8646655	8648162	.	-	.	Ledus.S1G089700
Ledus.S1	AUGUSTUS	transcript	8646655	8648162	.	-	.	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	stop_codon	8646652	8646654	.	-	0	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	CDS	8646655	8647629	1	-	0	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	exon	8646655	8647629	.	-	.	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	intron	8647630	8647717	.	-	.	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	CDS	8647718	8647791	0.95	-	2	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	exon	8647718	8647791	.	-	.	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	intron	8647792	8647857	.	-	.	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	CDS	8647858	8647913	0.51	-	1	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	exon	8647858	8647913	.	-	.	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	intron	8647914	8648088	.	-	.	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	CDS	8648089	8648162	0.9	-	0	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	exon	8648089	8648162	.	-	.	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
Ledus.S1	AUGUSTUS	start_codon	8648160	8648162	.	-	0	transcript_id "Ledus.S1G089700.t1"; gene_id "Ledus.S1G089700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6177.t1 is derived from g3620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29412235	29414852	.	+	.	Ledus.S1G359800
Ledus.S1	AUGUSTUS	transcript	29412235	29414852	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	start_codon	29412235	29412237	.	+	0	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	CDS	29412235	29412351	0.91	+	0	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	exon	29412235	29412351	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	intron	29412352	29412466	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	CDS	29412467	29412661	0.98	+	0	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	exon	29412467	29412661	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	intron	29412662	29412758	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	CDS	29412759	29412878	1	+	0	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	exon	29412759	29412878	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	intron	29412879	29413091	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	CDS	29413092	29413146	1	+	0	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	exon	29413092	29413146	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	intron	29413147	29413309	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	CDS	29413310	29413368	1	+	2	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	exon	29413310	29413368	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	intron	29413369	29413577	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	CDS	29413578	29413718	1	+	0	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	exon	29413578	29413718	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	intron	29413719	29413817	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	CDS	29413818	29414003	0.99	+	0	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	exon	29413818	29414003	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	intron	29414004	29414116	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	CDS	29414117	29414153	1	+	0	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	exon	29414117	29414153	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	intron	29414154	29414263	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	CDS	29414264	29414433	0.99	+	2	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	exon	29414264	29414433	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	intron	29414434	29414654	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	CDS	29414655	29414738	1	+	0	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	exon	29414655	29414738	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	intron	29414739	29414831	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	CDS	29414832	29414852	1	+	0	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	exon	29414832	29414852	.	+	.	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
Ledus.S1	AUGUSTUS	stop_codon	29414853	29414855	.	+	0	transcript_id "Ledus.S1G359800.t1"; gene_id "Ledus.S1G359800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg2129.t1 is derived from g8992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14930165	14932689	.	+	.	Ledus.S2G201100
Ledus.S2	AUGUSTUS	transcript	14931314	14932689	.	+	.	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	start_codon	14931314	14931316	.	+	0	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14931314	14931427	0.6	+	0	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14931314	14931427	.	+	.	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14931428	14931507	.	+	.	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14931508	14931649	0.95	+	0	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14931508	14931649	.	+	.	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14931650	14931756	.	+	.	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14931757	14932007	0.95	+	2	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14931757	14932007	.	+	.	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14932008	14932146	.	+	.	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14932147	14932414	0.95	+	0	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14932147	14932414	.	+	.	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14932415	14932489	.	+	.	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14932490	14932689	0.85	+	2	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14932490	14932689	.	+	.	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	stop_codon	14932690	14932692	.	+	0	transcript_id "Ledus.S2G201100.t1"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	transcript	14931331	14932689	.	+	.	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	start_codon	14931331	14931333	.	+	0	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14931331	14931357	0.69	+	0	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14931331	14931357	.	+	.	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14931358	14931507	.	+	.	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14931508	14931649	0.66	+	0	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14931508	14931649	.	+	.	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14931650	14931756	.	+	.	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14931757	14932007	0.66	+	2	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14931757	14932007	.	+	.	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14932008	14932146	.	+	.	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14932147	14932414	0.92	+	0	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14932147	14932414	.	+	.	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14932415	14932489	.	+	.	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14932490	14932689	0.85	+	2	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14932490	14932689	.	+	.	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	stop_codon	14932690	14932692	.	+	0	transcript_id "Ledus.S2G201100.t2"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	transcript	14930165	14932689	.	+	.	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	start_codon	14930165	14930167	.	+	0	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14930165	14930876	0.41	+	0	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14930165	14930876	.	+	.	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14930877	14930978	.	+	.	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14930979	14930992	0.68	+	2	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14930979	14930992	.	+	.	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14930993	14931507	.	+	.	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14931508	14931649	0.63	+	0	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14931508	14931649	.	+	.	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14931650	14931756	.	+	.	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14931757	14932007	0.63	+	2	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14931757	14932007	.	+	.	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14932008	14932146	.	+	.	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14932147	14932414	0.94	+	0	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14932147	14932414	.	+	.	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	intron	14932415	14932489	.	+	.	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	CDS	14932490	14932689	0.84	+	2	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	exon	14932490	14932689	.	+	.	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
Ledus.S2	AUGUSTUS	stop_codon	14932690	14932692	.	+	0	transcript_id "Ledus.S2G201100.t3"; gene_id "Ledus.S2G201100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6174.t1 is derived from g3617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29394157	29399189	.	+	.	Ledus.S1G359500
Ledus.S1	AUGUSTUS	transcript	29394157	29399189	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	start_codon	29394157	29394159	.	+	0	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29394157	29394164	1	+	0	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29394157	29394164	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29394165	29394323	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29394324	29394534	1	+	1	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29394324	29394534	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29394535	29394631	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29394632	29394830	0.98	+	0	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29394632	29394830	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29394831	29394977	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29394978	29395359	1	+	2	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29394978	29395359	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29395360	29395533	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29395534	29395729	1	+	1	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29395534	29395729	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29395730	29395937	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29395938	29396105	1	+	0	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29395938	29396105	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29396106	29396197	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29396198	29396258	1	+	0	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29396198	29396258	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29396259	29396402	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29396403	29396469	1	+	2	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29396403	29396469	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29396470	29396623	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29396624	29396875	1	+	1	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29396624	29396875	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29396876	29397011	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29397012	29397243	0.96	+	1	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29397012	29397243	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29397244	29397326	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29397327	29397442	1	+	0	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29397327	29397442	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29397443	29397525	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29397526	29397602	1	+	1	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29397526	29397602	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29397603	29397724	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29397725	29397885	1	+	2	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29397725	29397885	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29397886	29397967	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29397968	29398162	1	+	0	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29397968	29398162	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29398163	29398253	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29398254	29398362	0.94	+	0	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29398254	29398362	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29398363	29398478	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29398479	29398561	1	+	2	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29398479	29398561	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29398562	29398645	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29398646	29398783	1	+	0	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29398646	29398783	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29398784	29398871	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29398872	29399054	1	+	0	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29398872	29399054	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	intron	29399055	29399144	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	CDS	29399145	29399189	1	+	0	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	exon	29399145	29399189	.	+	.	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
Ledus.S1	AUGUSTUS	stop_codon	29399190	29399192	.	+	0	transcript_id "Ledus.S1G359500.t1"; gene_id "Ledus.S1G359500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7021.t1 is derived from g6552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	861772	862866	.	+	.	Ledus.C7G008200
Ledus.C7	AUGUSTUS	transcript	861772	862866	.	+	.	transcript_id "Ledus.C7G008200.t1"; gene_id "Ledus.C7G008200"
Ledus.C7	AUGUSTUS	start_codon	861772	861774	.	+	0	transcript_id "Ledus.C7G008200.t1"; gene_id "Ledus.C7G008200"
Ledus.C7	AUGUSTUS	CDS	861772	862022	0.21	+	0	transcript_id "Ledus.C7G008200.t1"; gene_id "Ledus.C7G008200"
Ledus.C7	AUGUSTUS	exon	861772	862022	.	+	.	transcript_id "Ledus.C7G008200.t1"; gene_id "Ledus.C7G008200"
Ledus.C7	AUGUSTUS	intron	862023	862508	.	+	.	transcript_id "Ledus.C7G008200.t1"; gene_id "Ledus.C7G008200"
Ledus.C7	AUGUSTUS	CDS	862509	862866	0.22	+	1	transcript_id "Ledus.C7G008200.t1"; gene_id "Ledus.C7G008200"
Ledus.C7	AUGUSTUS	exon	862509	862866	.	+	.	transcript_id "Ledus.C7G008200.t1"; gene_id "Ledus.C7G008200"
Ledus.C7	AUGUSTUS	stop_codon	862867	862869	.	+	0	transcript_id "Ledus.C7G008200.t1"; gene_id "Ledus.C7G008200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5950.t1 is derived from g3393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28018757	28021727	.	-	.	Ledus.S1G337100
Ledus.S1	AUGUSTUS	transcript	28018757	28021727	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	stop_codon	28018754	28018756	.	-	0	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	CDS	28018757	28018960	1	-	0	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	exon	28018757	28018960	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	intron	28018961	28019116	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	CDS	28019117	28019175	0.97	-	2	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	exon	28019117	28019175	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	intron	28019176	28019294	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	CDS	28019295	28019439	1	-	0	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	exon	28019295	28019439	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	intron	28019440	28019544	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	CDS	28019545	28019674	1	-	1	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	exon	28019545	28019674	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	intron	28019675	28019768	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	CDS	28019769	28019866	1	-	0	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	exon	28019769	28019866	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	intron	28019867	28020093	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	CDS	28020094	28020235	1	-	1	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	exon	28020094	28020235	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	intron	28020236	28020343	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	CDS	28020344	28020435	1	-	0	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	exon	28020344	28020435	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	intron	28020436	28020633	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	CDS	28020634	28020738	1	-	0	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	exon	28020634	28020738	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	intron	28020739	28020847	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	CDS	28020848	28020919	0.96	-	0	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	exon	28020848	28020919	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	intron	28020920	28021003	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	CDS	28021004	28021039	1	-	0	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	exon	28021004	28021039	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	intron	28021040	28021667	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	CDS	28021668	28021727	0.54	-	0	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	exon	28021668	28021727	.	-	.	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
Ledus.S1	AUGUSTUS	start_codon	28021725	28021727	.	-	0	transcript_id "Ledus.S1G337100.t1"; gene_id "Ledus.S1G337100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3716.t1 is derived from g1152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11130613	11131124	.	-	.	Ledus.S1G113700
Ledus.S1	AUGUSTUS	transcript	11130613	11131124	.	-	.	transcript_id "Ledus.S1G113700.t1"; gene_id "Ledus.S1G113700"
Ledus.S1	AUGUSTUS	stop_codon	11130610	11130612	.	-	0	transcript_id "Ledus.S1G113700.t1"; gene_id "Ledus.S1G113700"
Ledus.S1	AUGUSTUS	CDS	11130613	11130901	0.74	-	1	transcript_id "Ledus.S1G113700.t1"; gene_id "Ledus.S1G113700"
Ledus.S1	AUGUSTUS	exon	11130613	11130901	.	-	.	transcript_id "Ledus.S1G113700.t1"; gene_id "Ledus.S1G113700"
Ledus.S1	AUGUSTUS	intron	11130902	11131035	.	-	.	transcript_id "Ledus.S1G113700.t1"; gene_id "Ledus.S1G113700"
Ledus.S1	AUGUSTUS	CDS	11131036	11131124	0.79	-	0	transcript_id "Ledus.S1G113700.t1"; gene_id "Ledus.S1G113700"
Ledus.S1	AUGUSTUS	exon	11131036	11131124	.	-	.	transcript_id "Ledus.S1G113700.t1"; gene_id "Ledus.S1G113700"
Ledus.S1	AUGUSTUS	start_codon	11131122	11131124	.	-	0	transcript_id "Ledus.S1G113700.t1"; gene_id "Ledus.S1G113700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11282.t1 is derived from g4900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3311595	3312090	.	+	.	Ledus.S4G043800
Ledus.S4	AUGUSTUS	transcript	3311595	3312090	.	+	.	transcript_id "Ledus.S4G043800.t1"; gene_id "Ledus.S4G043800"
Ledus.S4	AUGUSTUS	start_codon	3311595	3311597	.	+	0	transcript_id "Ledus.S4G043800.t1"; gene_id "Ledus.S4G043800"
Ledus.S4	AUGUSTUS	CDS	3311595	3311673	0.7	+	0	transcript_id "Ledus.S4G043800.t1"; gene_id "Ledus.S4G043800"
Ledus.S4	AUGUSTUS	exon	3311595	3311673	.	+	.	transcript_id "Ledus.S4G043800.t1"; gene_id "Ledus.S4G043800"
Ledus.S4	AUGUSTUS	intron	3311674	3311848	.	+	.	transcript_id "Ledus.S4G043800.t1"; gene_id "Ledus.S4G043800"
Ledus.S4	AUGUSTUS	CDS	3311849	3312090	0.59	+	2	transcript_id "Ledus.S4G043800.t1"; gene_id "Ledus.S4G043800"
Ledus.S4	AUGUSTUS	exon	3311849	3312090	.	+	.	transcript_id "Ledus.S4G043800.t1"; gene_id "Ledus.S4G043800"
Ledus.S4	AUGUSTUS	stop_codon	3312091	3312093	.	+	0	transcript_id "Ledus.S4G043800.t1"; gene_id "Ledus.S4G043800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5513.t1 is derived from g2952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24722270	24723454	.	-	.	Ledus.S1G293400
Ledus.S1	AUGUSTUS	transcript	24722270	24723454	.	-	.	transcript_id "Ledus.S1G293400.t1"; gene_id "Ledus.S1G293400"
Ledus.S1	AUGUSTUS	stop_codon	24722267	24722269	.	-	0	transcript_id "Ledus.S1G293400.t1"; gene_id "Ledus.S1G293400"
Ledus.S1	AUGUSTUS	CDS	24722270	24723454	0.52	-	0	transcript_id "Ledus.S1G293400.t1"; gene_id "Ledus.S1G293400"
Ledus.S1	AUGUSTUS	exon	24722270	24723454	.	-	.	transcript_id "Ledus.S1G293400.t1"; gene_id "Ledus.S1G293400"
Ledus.S1	AUGUSTUS	start_codon	24723452	24723454	.	-	0	transcript_id "Ledus.S1G293400.t1"; gene_id "Ledus.S1G293400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5414.t1 is derived from g2853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24038395	24039032	.	-	.	Ledus.S1G283500
Ledus.S1	AUGUSTUS	transcript	24038395	24039032	.	-	.	transcript_id "Ledus.S1G283500.t1"; gene_id "Ledus.S1G283500"
Ledus.S1	AUGUSTUS	stop_codon	24038392	24038394	.	-	0	transcript_id "Ledus.S1G283500.t1"; gene_id "Ledus.S1G283500"
Ledus.S1	AUGUSTUS	CDS	24038395	24038748	1	-	0	transcript_id "Ledus.S1G283500.t1"; gene_id "Ledus.S1G283500"
Ledus.S1	AUGUSTUS	exon	24038395	24038748	.	-	.	transcript_id "Ledus.S1G283500.t1"; gene_id "Ledus.S1G283500"
Ledus.S1	AUGUSTUS	intron	24038749	24038852	.	-	.	transcript_id "Ledus.S1G283500.t1"; gene_id "Ledus.S1G283500"
Ledus.S1	AUGUSTUS	CDS	24038853	24039032	0.58	-	0	transcript_id "Ledus.S1G283500.t1"; gene_id "Ledus.S1G283500"
Ledus.S1	AUGUSTUS	exon	24038853	24039032	.	-	.	transcript_id "Ledus.S1G283500.t1"; gene_id "Ledus.S1G283500"
Ledus.S1	AUGUSTUS	start_codon	24039030	24039032	.	-	0	transcript_id "Ledus.S1G283500.t1"; gene_id "Ledus.S1G283500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8553.t1 is derived from g9583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	140807	142517	.	-	.	Ledus.S3G003000
Ledus.S3	AUGUSTUS	transcript	140807	142517	.	-	.	transcript_id "Ledus.S3G003000.t1"; gene_id "Ledus.S3G003000"
Ledus.S3	AUGUSTUS	stop_codon	140804	140806	.	-	0	transcript_id "Ledus.S3G003000.t1"; gene_id "Ledus.S3G003000"
Ledus.S3	AUGUSTUS	CDS	140807	141933	0.58	-	2	transcript_id "Ledus.S3G003000.t1"; gene_id "Ledus.S3G003000"
Ledus.S3	AUGUSTUS	exon	140807	141933	.	-	.	transcript_id "Ledus.S3G003000.t1"; gene_id "Ledus.S3G003000"
Ledus.S3	AUGUSTUS	intron	141934	142010	.	-	.	transcript_id "Ledus.S3G003000.t1"; gene_id "Ledus.S3G003000"
Ledus.S3	AUGUSTUS	CDS	142011	142075	0.66	-	1	transcript_id "Ledus.S3G003000.t1"; gene_id "Ledus.S3G003000"
Ledus.S3	AUGUSTUS	exon	142011	142075	.	-	.	transcript_id "Ledus.S3G003000.t1"; gene_id "Ledus.S3G003000"
Ledus.S3	AUGUSTUS	intron	142076	142485	.	-	.	transcript_id "Ledus.S3G003000.t1"; gene_id "Ledus.S3G003000"
Ledus.S3	AUGUSTUS	CDS	142486	142517	0.96	-	0	transcript_id "Ledus.S3G003000.t1"; gene_id "Ledus.S3G003000"
Ledus.S3	AUGUSTUS	exon	142486	142517	.	-	.	transcript_id "Ledus.S3G003000.t1"; gene_id "Ledus.S3G003000"
Ledus.S3	AUGUSTUS	start_codon	142515	142517	.	-	0	transcript_id "Ledus.S3G003000.t1"; gene_id "Ledus.S3G003000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4067.t1 is derived from g1503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14423061	14423708	.	+	.	Ledus.S1G148800
Ledus.S1	AUGUSTUS	transcript	14423061	14423708	.	+	.	transcript_id "Ledus.S1G148800.t1"; gene_id "Ledus.S1G148800"
Ledus.S1	AUGUSTUS	start_codon	14423061	14423063	.	+	0	transcript_id "Ledus.S1G148800.t1"; gene_id "Ledus.S1G148800"
Ledus.S1	AUGUSTUS	CDS	14423061	14423708	0.93	+	0	transcript_id "Ledus.S1G148800.t1"; gene_id "Ledus.S1G148800"
Ledus.S1	AUGUSTUS	exon	14423061	14423708	.	+	.	transcript_id "Ledus.S1G148800.t1"; gene_id "Ledus.S1G148800"
Ledus.S1	AUGUSTUS	stop_codon	14423709	14423711	.	+	0	transcript_id "Ledus.S1G148800.t1"; gene_id "Ledus.S1G148800"
# This transcript jg2103.t2 is derived from g8966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2104.t1 is derived from g8967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14738601	14739010	.	+	.	Ledus.S2G198600
Ledus.S2	AUGUSTUS	transcript	14738601	14739010	.	+	.	transcript_id "Ledus.S2G198600.t1"; gene_id "Ledus.S2G198600"
Ledus.S2	AUGUSTUS	start_codon	14738601	14738603	.	+	0	transcript_id "Ledus.S2G198600.t1"; gene_id "Ledus.S2G198600"
Ledus.S2	AUGUSTUS	CDS	14738601	14738708	1	+	0	transcript_id "Ledus.S2G198600.t1"; gene_id "Ledus.S2G198600"
Ledus.S2	AUGUSTUS	exon	14738601	14738708	.	+	.	transcript_id "Ledus.S2G198600.t1"; gene_id "Ledus.S2G198600"
Ledus.S2	AUGUSTUS	intron	14738709	14738851	.	+	.	transcript_id "Ledus.S2G198600.t1"; gene_id "Ledus.S2G198600"
Ledus.S2	AUGUSTUS	CDS	14738852	14739010	1	+	0	transcript_id "Ledus.S2G198600.t1"; gene_id "Ledus.S2G198600"
Ledus.S2	AUGUSTUS	exon	14738852	14739010	.	+	.	transcript_id "Ledus.S2G198600.t1"; gene_id "Ledus.S2G198600"
Ledus.S2	AUGUSTUS	stop_codon	14739011	14739013	.	+	0	transcript_id "Ledus.S2G198600.t1"; gene_id "Ledus.S2G198600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9950.t1 is derived from g10980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11436629	11437105	.	-	.	Ledus.S3G142700
Ledus.S3	AUGUSTUS	transcript	11436629	11437105	.	-	.	transcript_id "Ledus.S3G142700.t1"; gene_id "Ledus.S3G142700"
Ledus.S3	AUGUSTUS	stop_codon	11436626	11436628	.	-	0	transcript_id "Ledus.S3G142700.t1"; gene_id "Ledus.S3G142700"
Ledus.S3	AUGUSTUS	CDS	11436629	11437105	0.89	-	0	transcript_id "Ledus.S3G142700.t1"; gene_id "Ledus.S3G142700"
Ledus.S3	AUGUSTUS	exon	11436629	11437105	.	-	.	transcript_id "Ledus.S3G142700.t1"; gene_id "Ledus.S3G142700"
Ledus.S3	AUGUSTUS	start_codon	11437103	11437105	.	-	0	transcript_id "Ledus.S3G142700.t1"; gene_id "Ledus.S3G142700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10113.t1 is derived from g11143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12887159	12887956	.	+	.	Ledus.S3G159000
Ledus.S3	AUGUSTUS	transcript	12887159	12887956	.	+	.	transcript_id "Ledus.S3G159000.t1"; gene_id "Ledus.S3G159000"
Ledus.S3	AUGUSTUS	start_codon	12887159	12887161	.	+	0	transcript_id "Ledus.S3G159000.t1"; gene_id "Ledus.S3G159000"
Ledus.S3	AUGUSTUS	CDS	12887159	12887956	0.69	+	0	transcript_id "Ledus.S3G159000.t1"; gene_id "Ledus.S3G159000"
Ledus.S3	AUGUSTUS	exon	12887159	12887956	.	+	.	transcript_id "Ledus.S3G159000.t1"; gene_id "Ledus.S3G159000"
Ledus.S3	AUGUSTUS	stop_codon	12887957	12887959	.	+	0	transcript_id "Ledus.S3G159000.t1"; gene_id "Ledus.S3G159000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8540.t1 is derived from g9570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	95023	95250	.	+	.	Ledus.S3G001700
Ledus.S3	AUGUSTUS	transcript	95023	95250	.	+	.	transcript_id "Ledus.S3G001700.t1"; gene_id "Ledus.S3G001700"
Ledus.S3	AUGUSTUS	start_codon	95023	95025	.	+	0	transcript_id "Ledus.S3G001700.t1"; gene_id "Ledus.S3G001700"
Ledus.S3	AUGUSTUS	CDS	95023	95250	0.66	+	0	transcript_id "Ledus.S3G001700.t1"; gene_id "Ledus.S3G001700"
Ledus.S3	AUGUSTUS	exon	95023	95250	.	+	.	transcript_id "Ledus.S3G001700.t1"; gene_id "Ledus.S3G001700"
Ledus.S3	AUGUSTUS	stop_codon	95251	95253	.	+	0	transcript_id "Ledus.S3G001700.t1"; gene_id "Ledus.S3G001700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3331.t1 is derived from g766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7498214	7498941	.	-	.	Ledus.S1G075200
Ledus.S1	AUGUSTUS	transcript	7498214	7498941	.	-	.	transcript_id "Ledus.S1G075200.t1"; gene_id "Ledus.S1G075200"
Ledus.S1	AUGUSTUS	stop_codon	7498211	7498213	.	-	0	transcript_id "Ledus.S1G075200.t1"; gene_id "Ledus.S1G075200"
Ledus.S1	AUGUSTUS	CDS	7498214	7498497	0.57	-	2	transcript_id "Ledus.S1G075200.t1"; gene_id "Ledus.S1G075200"
Ledus.S1	AUGUSTUS	exon	7498214	7498497	.	-	.	transcript_id "Ledus.S1G075200.t1"; gene_id "Ledus.S1G075200"
Ledus.S1	AUGUSTUS	intron	7498498	7498652	.	-	.	transcript_id "Ledus.S1G075200.t1"; gene_id "Ledus.S1G075200"
Ledus.S1	AUGUSTUS	CDS	7498653	7498941	0.43	-	0	transcript_id "Ledus.S1G075200.t1"; gene_id "Ledus.S1G075200"
Ledus.S1	AUGUSTUS	exon	7498653	7498941	.	-	.	transcript_id "Ledus.S1G075200.t1"; gene_id "Ledus.S1G075200"
Ledus.S1	AUGUSTUS	start_codon	7498939	7498941	.	-	0	transcript_id "Ledus.S1G075200.t1"; gene_id "Ledus.S1G075200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8566.t1 is derived from g9596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	203635	209867	.	-	.	Ledus.S3G004300
Ledus.S3	AUGUSTUS	transcript	203635	209867	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	stop_codon	203632	203634	.	-	0	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	203635	204564	0.93	-	0	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	203635	204564	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	204565	204653	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	204654	204756	1	-	1	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	204654	204756	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	204757	204854	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	204855	204997	1	-	0	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	204855	204997	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	204998	205184	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	205185	205284	1	-	1	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	205185	205284	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	205285	205407	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	205408	205497	1	-	1	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	205408	205497	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	205498	205579	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	205580	205619	1	-	2	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	205580	205619	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	205620	205763	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	205764	205872	1	-	0	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	205764	205872	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	205873	205950	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	205951	206117	0.9	-	2	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	205951	206117	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	206118	206222	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	206223	206326	1	-	1	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	206223	206326	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	206327	206437	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	206438	206512	1	-	1	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	206438	206512	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	206513	206747	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	206748	206876	0.4	-	1	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	206748	206876	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	206877	207162	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	207163	207197	0.4	-	0	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	207163	207197	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	207198	207414	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	207415	207428	0.4	-	2	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	207415	207428	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	207429	207900	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	207901	207979	0.57	-	0	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	207901	207979	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	207980	208119	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	208120	208227	1	-	0	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	208120	208227	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	208228	208378	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	208379	208611	0.64	-	2	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	208379	208611	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	208612	208727	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	208728	208835	0.56	-	2	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	208728	208835	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	208836	208927	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	208928	209078	1	-	0	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	208928	209078	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	209079	209262	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	209263	209360	1	-	2	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	209263	209360	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	intron	209361	209491	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	CDS	209492	209867	0.98	-	0	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	exon	209492	209867	.	-	.	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
Ledus.S3	AUGUSTUS	start_codon	209865	209867	.	-	0	transcript_id "Ledus.S3G004300.t1"; gene_id "Ledus.S3G004300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8665.t1 is derived from g9695.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1254671	1277296	.	+	.	Ledus.S3G014200
Ledus.S3	AUGUSTUS	transcript	1254671	1277296	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	start_codon	1254671	1254673	.	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1254671	1254767	0.86	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1254671	1254767	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1254768	1255435	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1255436	1255539	1	+	2	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1255436	1255539	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1255540	1255728	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1255729	1255863	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1255729	1255863	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1255864	1256075	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1256076	1256135	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1256076	1256135	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1256136	1256305	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1256306	1256400	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1256306	1256400	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1256401	1256537	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1256538	1256655	1	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1256538	1256655	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1256656	1256799	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1256800	1256901	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1256800	1256901	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1256902	1256996	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1256997	1257212	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1256997	1257212	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1257213	1257290	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1257291	1257451	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1257291	1257451	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1257452	1257596	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1257597	1257767	1	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1257597	1257767	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1257768	1257865	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1257866	1257955	0.69	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1257866	1257955	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1257956	1258065	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1258066	1258390	0.95	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1258066	1258390	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1258391	1258579	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1258580	1258684	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1258580	1258684	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1258685	1258783	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1258784	1258879	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1258784	1258879	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1258880	1259036	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1259037	1259104	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1259037	1259104	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1259105	1259340	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1259341	1259476	1	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1259341	1259476	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1259477	1259558	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1259559	1259753	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1259559	1259753	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1259754	1259913	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1259914	1260120	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1259914	1260120	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1260121	1260209	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1260210	1260308	0.43	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1260210	1260308	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1260309	1260439	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1260440	1260520	0.71	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1260440	1260520	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1260521	1260608	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1260609	1260707	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1260609	1260707	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1260708	1260843	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1260844	1261014	0.98	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1260844	1261014	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1261015	1261145	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1261146	1261220	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1261146	1261220	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1261221	1261293	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1261294	1261827	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1261294	1261827	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1261828	1261994	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1261995	1262351	0.99	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1261995	1262351	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1262352	1262513	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1262514	1262645	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1262514	1262645	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1262646	1262714	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1262715	1262828	0.61	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1262715	1262828	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1262829	1262939	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1262940	1263124	0.68	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1262940	1263124	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1263125	1263424	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1263425	1263533	0.97	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1263425	1263533	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1263534	1263642	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1263643	1263786	0.95	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1263643	1263786	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1263787	1263894	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1263895	1264212	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1263895	1264212	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1264213	1264511	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1264512	1265150	0.99	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1264512	1265150	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1265151	1265246	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1265247	1265441	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1265247	1265441	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1265442	1265556	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1265557	1265657	0.96	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1265557	1265657	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1265658	1265887	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1265888	1266180	0.96	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1265888	1266180	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1266181	1266305	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1266306	1266393	0.98	+	2	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1266306	1266393	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1266394	1266568	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1266569	1266868	0.72	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1266569	1266868	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1266869	1266972	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1266973	1267124	0.78	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1266973	1267124	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1267125	1267268	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1267269	1267347	0.82	+	2	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1267269	1267347	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1267348	1267511	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1267512	1267845	0.61	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1267512	1267845	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1267846	1267969	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1267970	1268128	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1267970	1268128	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1268129	1268204	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1268205	1268368	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1268205	1268368	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1268369	1268511	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1268512	1268695	0.94	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1268512	1268695	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1268696	1268805	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1268806	1269060	0.83	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1268806	1269060	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1269061	1269173	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1269174	1269368	0.62	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1269174	1269368	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1269369	1269518	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1269519	1269561	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1269519	1269561	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1269562	1269666	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1269667	1269815	1	+	2	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1269667	1269815	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1269816	1269990	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1269991	1270110	0.41	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1269991	1270110	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1270111	1270266	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1270267	1270512	0.3	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1270267	1270512	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1270513	1270645	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1270646	1271428	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1270646	1271428	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1271429	1271576	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1271577	1271650	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1271577	1271650	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1271651	1271737	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1271738	1272104	0.9	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1271738	1272104	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1272105	1272219	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1272220	1272318	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1272220	1272318	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1272319	1272454	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1272455	1272610	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1272455	1272610	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1272611	1272749	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1272750	1272931	0.99	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1272750	1272931	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1272932	1273036	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1273037	1273597	0.88	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1273037	1273597	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1273598	1273750	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1273751	1273928	1	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1273751	1273928	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1273929	1274055	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1274056	1274192	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1274056	1274192	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1274193	1274274	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1274275	1274401	1	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1274275	1274401	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1274402	1274559	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1274560	1274781	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1274560	1274781	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1274782	1274914	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1274915	1275274	0.91	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1274915	1275274	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1275275	1275377	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1275378	1275530	0.91	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1275378	1275530	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1275531	1275646	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1275647	1275862	0.78	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1275647	1275862	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1275863	1276055	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1276056	1276322	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1276056	1276322	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1276323	1276490	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1276491	1276543	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1276491	1276543	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1276544	1276642	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1276643	1276751	1	+	1	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1276643	1276751	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	intron	1276752	1276978	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	CDS	1276979	1277296	1	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	exon	1276979	1277296	.	+	.	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
Ledus.S3	AUGUSTUS	stop_codon	1277297	1277299	.	+	0	transcript_id "Ledus.S3G014200.t1"; gene_id "Ledus.S3G014200"
# This transcript jg5051.t2 is derived from g2490.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5052.t1 is derived from g2491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21326057	21326773	.	-	.	Ledus.S1G247300
Ledus.S1	AUGUSTUS	transcript	21326057	21326773	.	-	.	transcript_id "Ledus.S1G247300.t1"; gene_id "Ledus.S1G247300"
Ledus.S1	AUGUSTUS	stop_codon	21326054	21326056	.	-	0	transcript_id "Ledus.S1G247300.t1"; gene_id "Ledus.S1G247300"
Ledus.S1	AUGUSTUS	CDS	21326057	21326417	0.31	-	1	transcript_id "Ledus.S1G247300.t1"; gene_id "Ledus.S1G247300"
Ledus.S1	AUGUSTUS	exon	21326057	21326417	.	-	.	transcript_id "Ledus.S1G247300.t1"; gene_id "Ledus.S1G247300"
Ledus.S1	AUGUSTUS	intron	21326418	21326624	.	-	.	transcript_id "Ledus.S1G247300.t1"; gene_id "Ledus.S1G247300"
Ledus.S1	AUGUSTUS	CDS	21326625	21326773	0.79	-	0	transcript_id "Ledus.S1G247300.t1"; gene_id "Ledus.S1G247300"
Ledus.S1	AUGUSTUS	exon	21326625	21326773	.	-	.	transcript_id "Ledus.S1G247300.t1"; gene_id "Ledus.S1G247300"
Ledus.S1	AUGUSTUS	start_codon	21326771	21326773	.	-	0	transcript_id "Ledus.S1G247300.t1"; gene_id "Ledus.S1G247300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7310.t1 is derived from g11981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	971648	980893	.	-	.	Ledus.S5G008800
Ledus.S5	AUGUSTUS	transcript	971648	980893	.	-	.	transcript_id "Ledus.S5G008800.t1"; gene_id "Ledus.S5G008800"
Ledus.S5	AUGUSTUS	stop_codon	971645	971647	.	-	0	transcript_id "Ledus.S5G008800.t1"; gene_id "Ledus.S5G008800"
Ledus.S5	AUGUSTUS	CDS	971648	980478	0.61	-	2	transcript_id "Ledus.S5G008800.t1"; gene_id "Ledus.S5G008800"
Ledus.S5	AUGUSTUS	exon	971648	980478	.	-	.	transcript_id "Ledus.S5G008800.t1"; gene_id "Ledus.S5G008800"
Ledus.S5	AUGUSTUS	intron	980479	980622	.	-	.	transcript_id "Ledus.S5G008800.t1"; gene_id "Ledus.S5G008800"
Ledus.S5	AUGUSTUS	CDS	980623	980740	0.42	-	0	transcript_id "Ledus.S5G008800.t1"; gene_id "Ledus.S5G008800"
Ledus.S5	AUGUSTUS	exon	980623	980740	.	-	.	transcript_id "Ledus.S5G008800.t1"; gene_id "Ledus.S5G008800"
Ledus.S5	AUGUSTUS	intron	980741	980842	.	-	.	transcript_id "Ledus.S5G008800.t1"; gene_id "Ledus.S5G008800"
Ledus.S5	AUGUSTUS	CDS	980843	980893	0.97	-	0	transcript_id "Ledus.S5G008800.t1"; gene_id "Ledus.S5G008800"
Ledus.S5	AUGUSTUS	exon	980843	980893	.	-	.	transcript_id "Ledus.S5G008800.t1"; gene_id "Ledus.S5G008800"
Ledus.S5	AUGUSTUS	start_codon	980891	980893	.	-	0	transcript_id "Ledus.S5G008800.t1"; gene_id "Ledus.S5G008800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10587.t1 is derived from g11617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16263266	16265410	.	-	.	Ledus.S3G206400
Ledus.S3	AUGUSTUS	transcript	16263266	16265410	.	-	.	transcript_id "Ledus.S3G206400.t1"; gene_id "Ledus.S3G206400"
Ledus.S3	AUGUSTUS	stop_codon	16263263	16263265	.	-	0	transcript_id "Ledus.S3G206400.t1"; gene_id "Ledus.S3G206400"
Ledus.S3	AUGUSTUS	CDS	16263266	16265410	0.47	-	0	transcript_id "Ledus.S3G206400.t1"; gene_id "Ledus.S3G206400"
Ledus.S3	AUGUSTUS	exon	16263266	16265410	.	-	.	transcript_id "Ledus.S3G206400.t1"; gene_id "Ledus.S3G206400"
Ledus.S3	AUGUSTUS	start_codon	16265408	16265410	.	-	0	transcript_id "Ledus.S3G206400.t1"; gene_id "Ledus.S3G206400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11222.t1 is derived from g4840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2803190	2805848	.	-	.	Ledus.S4G037800
Ledus.S4	AUGUSTUS	transcript	2803190	2805848	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	stop_codon	2803187	2803189	.	-	0	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2803190	2803266	1	-	2	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2803190	2803266	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2803267	2803365	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2803366	2803486	1	-	0	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2803366	2803486	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2803487	2803648	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2803649	2803704	1	-	2	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2803649	2803704	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2803705	2803796	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2803797	2803870	1	-	1	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2803797	2803870	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2803871	2803957	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2803958	2804004	1	-	0	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2803958	2804004	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2804005	2804088	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2804089	2804134	1	-	1	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2804089	2804134	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2804135	2804245	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2804246	2804322	1	-	0	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2804246	2804322	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2804323	2804472	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2804473	2804529	1	-	0	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2804473	2804529	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2804530	2804649	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2804650	2804692	1	-	1	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2804650	2804692	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2804693	2804789	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2804790	2804896	1	-	0	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2804790	2804896	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2804897	2804996	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2804997	2805069	1	-	1	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2804997	2805069	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2805070	2805215	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2805216	2805303	0.98	-	2	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2805216	2805303	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2805304	2805408	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2805409	2805473	0.75	-	1	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2805409	2805473	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2805474	2805575	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2805576	2805608	1	-	1	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2805576	2805608	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	intron	2805609	2805732	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	CDS	2805733	2805848	1	-	0	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	exon	2805733	2805848	.	-	.	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
Ledus.S4	AUGUSTUS	start_codon	2805846	2805848	.	-	0	transcript_id "Ledus.S4G037800.t1"; gene_id "Ledus.S4G037800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4062.t1 is derived from g1498.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14409081	14412812	.	+	.	Ledus.S1G148300
Ledus.S1	AUGUSTUS	transcript	14409081	14412812	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	start_codon	14409081	14409083	.	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14409081	14409419	0.97	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14409081	14409419	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14409420	14409620	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14409621	14409767	1	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14409621	14409767	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14409768	14409892	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14409893	14410027	0.99	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14409893	14410027	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14410028	14410145	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14410146	14410263	0.99	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14410146	14410263	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14410264	14410466	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14410467	14410591	1	+	2	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14410467	14410591	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14410592	14410728	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14410729	14410854	1	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14410729	14410854	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14410855	14411110	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14411111	14411191	1	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14411111	14411191	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14411192	14411295	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14411296	14411358	1	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14411296	14411358	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14411359	14411483	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14411484	14411558	1	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14411484	14411558	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14411559	14411653	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14411654	14411732	1	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14411654	14411732	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14411733	14411877	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14411878	14411978	1	+	2	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14411878	14411978	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14411979	14412077	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14412078	14412191	1	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14412078	14412191	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14412192	14412328	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14412329	14412442	1	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14412329	14412442	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14412443	14412600	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14412601	14412672	1	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14412601	14412672	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	intron	14412673	14412761	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	CDS	14412762	14412812	1	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	exon	14412762	14412812	.	+	.	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
Ledus.S1	AUGUSTUS	stop_codon	14412813	14412815	.	+	0	transcript_id "Ledus.S1G148300.t1"; gene_id "Ledus.S1G148300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1087.t1 is derived from g7948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7455730	7456758	.	+	.	Ledus.S2G096900
Ledus.S2	AUGUSTUS	transcript	7455730	7456758	.	+	.	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	start_codon	7455730	7455732	.	+	0	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	CDS	7455730	7455981	0.59	+	0	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	exon	7455730	7455981	.	+	.	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	intron	7455982	7456068	.	+	.	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	CDS	7456069	7456129	1	+	0	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	exon	7456069	7456129	.	+	.	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	intron	7456130	7456227	.	+	.	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	CDS	7456228	7456290	1	+	2	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	exon	7456228	7456290	.	+	.	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	intron	7456291	7456435	.	+	.	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	CDS	7456436	7456494	1	+	2	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	exon	7456436	7456494	.	+	.	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	intron	7456495	7456596	.	+	.	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	CDS	7456597	7456758	1	+	0	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	exon	7456597	7456758	.	+	.	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
Ledus.S2	AUGUSTUS	stop_codon	7456759	7456761	.	+	0	transcript_id "Ledus.S2G096900.t1"; gene_id "Ledus.S2G096900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11512.t1 is derived from g5130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5003298	5006093	.	+	.	Ledus.S4G066800
Ledus.S4	AUGUSTUS	transcript	5003298	5006093	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	start_codon	5003298	5003300	.	+	0	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5003298	5003511	0.64	+	0	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5003298	5003511	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5003512	5003691	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5003692	5003743	0.84	+	2	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5003692	5003743	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5003744	5003885	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5003886	5003961	0.98	+	1	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5003886	5003961	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5003962	5004045	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5004046	5004120	1	+	0	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5004046	5004120	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5004121	5004330	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5004331	5004488	1	+	0	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5004331	5004488	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5004489	5004963	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5004964	5005195	1	+	1	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5004964	5005195	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5005196	5005307	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5005308	5005371	0.7	+	0	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5005308	5005371	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5005372	5005482	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5005483	5006093	0.91	+	2	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5005483	5006093	.	+	.	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	stop_codon	5006094	5006096	.	+	0	transcript_id "Ledus.S4G066800.t1"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	transcript	5003298	5006093	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	start_codon	5003298	5003300	.	+	0	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5003298	5003511	0.56	+	0	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5003298	5003511	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5003512	5003691	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5003692	5003743	0.79	+	2	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5003692	5003743	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5003744	5003885	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5003886	5003961	0.97	+	1	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5003886	5003961	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5003962	5004045	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5004046	5004120	0.99	+	0	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5004046	5004120	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5004121	5004963	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5004964	5005004	0.99	+	0	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5004964	5005004	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5005005	5005116	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5005117	5005195	0.98	+	1	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5005117	5005195	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5005196	5005307	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5005308	5005371	0.59	+	0	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5005308	5005371	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	intron	5005372	5005482	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	CDS	5005483	5006093	0.89	+	2	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	exon	5005483	5006093	.	+	.	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
Ledus.S4	AUGUSTUS	stop_codon	5006094	5006096	.	+	0	transcript_id "Ledus.S4G066800.t2"; gene_id "Ledus.S4G066800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg2847.t1 is derived from g281.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4148356	4149288	.	-	.	Ledus.S1G026800
Ledus.S1	AUGUSTUS	transcript	4148356	4149288	.	-	.	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	stop_codon	4148353	4148355	.	-	0	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	CDS	4148356	4148408	1	-	2	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	exon	4148356	4148408	.	-	.	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	intron	4148409	4148501	.	-	.	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	CDS	4148502	4148573	1	-	2	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	exon	4148502	4148573	.	-	.	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	intron	4148574	4148672	.	-	.	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	CDS	4148673	4148705	0.89	-	2	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	exon	4148673	4148705	.	-	.	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	intron	4148706	4148803	.	-	.	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	CDS	4148804	4148885	0.87	-	0	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	exon	4148804	4148885	.	-	.	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	intron	4148886	4148963	.	-	.	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	CDS	4148964	4148982	0.91	-	1	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	exon	4148964	4148982	.	-	.	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	intron	4148983	4149202	.	-	.	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	CDS	4149203	4149288	0.71	-	0	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	exon	4149203	4149288	.	-	.	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	start_codon	4149286	4149288	.	-	0	transcript_id "Ledus.S1G026800.t1"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	transcript	4148360	4149288	.	-	.	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	stop_codon	4148357	4148359	.	-	0	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	CDS	4148360	4148408	0.93	-	1	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	exon	4148360	4148408	.	-	.	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	intron	4148409	4148501	.	-	.	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	CDS	4148502	4148573	0.93	-	1	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	exon	4148502	4148573	.	-	.	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	intron	4148574	4148661	.	-	.	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	CDS	4148662	4148885	0.89	-	0	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	exon	4148662	4148885	.	-	.	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	intron	4148886	4148963	.	-	.	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	CDS	4148964	4148982	0.9	-	1	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	exon	4148964	4148982	.	-	.	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	intron	4148983	4149202	.	-	.	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	CDS	4149203	4149288	0.71	-	0	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	exon	4149203	4149288	.	-	.	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
Ledus.S1	AUGUSTUS	start_codon	4149286	4149288	.	-	0	transcript_id "Ledus.S1G026800.t2"; gene_id "Ledus.S1G026800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12257.t1 is derived from g5877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10676353	10679042	.	+	.	Ledus.S4G141300
Ledus.S4	AUGUSTUS	transcript	10676353	10679042	.	+	.	transcript_id "Ledus.S4G141300.t1"; gene_id "Ledus.S4G141300"
Ledus.S4	AUGUSTUS	start_codon	10676353	10676355	.	+	0	transcript_id "Ledus.S4G141300.t1"; gene_id "Ledus.S4G141300"
Ledus.S4	AUGUSTUS	CDS	10676353	10676556	0.81	+	0	transcript_id "Ledus.S4G141300.t1"; gene_id "Ledus.S4G141300"
Ledus.S4	AUGUSTUS	exon	10676353	10676556	.	+	.	transcript_id "Ledus.S4G141300.t1"; gene_id "Ledus.S4G141300"
Ledus.S4	AUGUSTUS	intron	10676557	10676668	.	+	.	transcript_id "Ledus.S4G141300.t1"; gene_id "Ledus.S4G141300"
Ledus.S4	AUGUSTUS	CDS	10676669	10677685	1	+	0	transcript_id "Ledus.S4G141300.t1"; gene_id "Ledus.S4G141300"
Ledus.S4	AUGUSTUS	exon	10676669	10677685	.	+	.	transcript_id "Ledus.S4G141300.t1"; gene_id "Ledus.S4G141300"
Ledus.S4	AUGUSTUS	intron	10677686	10677767	.	+	.	transcript_id "Ledus.S4G141300.t1"; gene_id "Ledus.S4G141300"
Ledus.S4	AUGUSTUS	CDS	10677768	10679042	0.97	+	0	transcript_id "Ledus.S4G141300.t1"; gene_id "Ledus.S4G141300"
Ledus.S4	AUGUSTUS	exon	10677768	10679042	.	+	.	transcript_id "Ledus.S4G141300.t1"; gene_id "Ledus.S4G141300"
Ledus.S4	AUGUSTUS	stop_codon	10679043	10679045	.	+	0	transcript_id "Ledus.S4G141300.t1"; gene_id "Ledus.S4G141300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10886.t1 is derived from g4504.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	318412	321470	.	+	.	Ledus.S4G004200
Ledus.S4	AUGUSTUS	transcript	318412	321470	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	start_codon	318412	318414	.	+	0	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	318412	318473	0.98	+	0	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	318412	318473	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	318474	318560	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	318561	318649	1	+	1	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	318561	318649	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	318650	318980	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	318981	319126	1	+	2	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	318981	319126	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	319127	319224	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	319225	319272	1	+	0	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	319225	319272	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	319273	319348	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	319349	319430	1	+	0	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	319349	319430	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	319431	319751	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	319752	319854	1	+	2	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	319752	319854	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	319855	320040	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	320041	320161	1	+	1	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	320041	320161	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	320162	320388	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	320389	320415	0.75	+	0	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	320389	320415	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	320416	320469	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	320470	320517	0.55	+	0	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	320470	320517	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	320518	320679	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	320680	320763	1	+	0	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	320680	320763	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	320764	320843	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	320844	320908	1	+	0	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	320844	320908	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	320909	321113	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	321114	321165	1	+	1	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	321114	321165	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	321166	321257	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	321258	321296	0.9	+	0	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	321258	321296	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	intron	321297	321398	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	CDS	321399	321470	0.96	+	0	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	exon	321399	321470	.	+	.	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
Ledus.S4	AUGUSTUS	stop_codon	321471	321473	.	+	0	transcript_id "Ledus.S4G004200.t1"; gene_id "Ledus.S4G004200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10616.t1 is derived from g11646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16461862	16463128	.	-	.	Ledus.S3G209300
Ledus.S3	AUGUSTUS	transcript	16461862	16463128	.	-	.	transcript_id "Ledus.S3G209300.t1"; gene_id "Ledus.S3G209300"
Ledus.S3	AUGUSTUS	stop_codon	16461859	16461861	.	-	0	transcript_id "Ledus.S3G209300.t1"; gene_id "Ledus.S3G209300"
Ledus.S3	AUGUSTUS	CDS	16461862	16461931	1	-	1	transcript_id "Ledus.S3G209300.t1"; gene_id "Ledus.S3G209300"
Ledus.S3	AUGUSTUS	exon	16461862	16461931	.	-	.	transcript_id "Ledus.S3G209300.t1"; gene_id "Ledus.S3G209300"
Ledus.S3	AUGUSTUS	intron	16461932	16462071	.	-	.	transcript_id "Ledus.S3G209300.t1"; gene_id "Ledus.S3G209300"
Ledus.S3	AUGUSTUS	CDS	16462072	16462598	1	-	0	transcript_id "Ledus.S3G209300.t1"; gene_id "Ledus.S3G209300"
Ledus.S3	AUGUSTUS	exon	16462072	16462598	.	-	.	transcript_id "Ledus.S3G209300.t1"; gene_id "Ledus.S3G209300"
Ledus.S3	AUGUSTUS	intron	16462599	16462696	.	-	.	transcript_id "Ledus.S3G209300.t1"; gene_id "Ledus.S3G209300"
Ledus.S3	AUGUSTUS	CDS	16462697	16463128	0.97	-	0	transcript_id "Ledus.S3G209300.t1"; gene_id "Ledus.S3G209300"
Ledus.S3	AUGUSTUS	exon	16462697	16463128	.	-	.	transcript_id "Ledus.S3G209300.t1"; gene_id "Ledus.S3G209300"
Ledus.S3	AUGUSTUS	start_codon	16463126	16463128	.	-	0	transcript_id "Ledus.S3G209300.t1"; gene_id "Ledus.S3G209300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10190.t1 is derived from g11220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13497115	13499042	.	+	.	Ledus.S3G166700
Ledus.S3	AUGUSTUS	transcript	13497115	13499042	.	+	.	transcript_id "Ledus.S3G166700.t1"; gene_id "Ledus.S3G166700"
Ledus.S3	AUGUSTUS	start_codon	13497115	13497117	.	+	0	transcript_id "Ledus.S3G166700.t1"; gene_id "Ledus.S3G166700"
Ledus.S3	AUGUSTUS	CDS	13497115	13497984	0.5	+	0	transcript_id "Ledus.S3G166700.t1"; gene_id "Ledus.S3G166700"
Ledus.S3	AUGUSTUS	exon	13497115	13497984	.	+	.	transcript_id "Ledus.S3G166700.t1"; gene_id "Ledus.S3G166700"
Ledus.S3	AUGUSTUS	intron	13497985	13498046	.	+	.	transcript_id "Ledus.S3G166700.t1"; gene_id "Ledus.S3G166700"
Ledus.S3	AUGUSTUS	CDS	13498047	13499042	0.89	+	0	transcript_id "Ledus.S3G166700.t1"; gene_id "Ledus.S3G166700"
Ledus.S3	AUGUSTUS	exon	13498047	13499042	.	+	.	transcript_id "Ledus.S3G166700.t1"; gene_id "Ledus.S3G166700"
Ledus.S3	AUGUSTUS	stop_codon	13499043	13499045	.	+	0	transcript_id "Ledus.S3G166700.t1"; gene_id "Ledus.S3G166700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10360.t1 is derived from g11390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14413381	14413818	.	-	.	Ledus.S3G183700
Ledus.S3	AUGUSTUS	transcript	14413381	14413818	.	-	.	transcript_id "Ledus.S3G183700.t1"; gene_id "Ledus.S3G183700"
Ledus.S3	AUGUSTUS	stop_codon	14413378	14413380	.	-	0	transcript_id "Ledus.S3G183700.t1"; gene_id "Ledus.S3G183700"
Ledus.S3	AUGUSTUS	CDS	14413381	14413818	0.59	-	0	transcript_id "Ledus.S3G183700.t1"; gene_id "Ledus.S3G183700"
Ledus.S3	AUGUSTUS	exon	14413381	14413818	.	-	.	transcript_id "Ledus.S3G183700.t1"; gene_id "Ledus.S3G183700"
Ledus.S3	AUGUSTUS	start_codon	14413816	14413818	.	-	0	transcript_id "Ledus.S3G183700.t1"; gene_id "Ledus.S3G183700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3762.t1 is derived from g1198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11700394	11703710	.	-	.	Ledus.S1G118300
Ledus.S1	AUGUSTUS	transcript	11700394	11703710	.	-	.	transcript_id "Ledus.S1G118300.t1"; gene_id "Ledus.S1G118300"
Ledus.S1	AUGUSTUS	stop_codon	11700391	11700393	.	-	0	transcript_id "Ledus.S1G118300.t1"; gene_id "Ledus.S1G118300"
Ledus.S1	AUGUSTUS	CDS	11700394	11702032	0.85	-	1	transcript_id "Ledus.S1G118300.t1"; gene_id "Ledus.S1G118300"
Ledus.S1	AUGUSTUS	exon	11700394	11702032	.	-	.	transcript_id "Ledus.S1G118300.t1"; gene_id "Ledus.S1G118300"
Ledus.S1	AUGUSTUS	intron	11702033	11702642	.	-	.	transcript_id "Ledus.S1G118300.t1"; gene_id "Ledus.S1G118300"
Ledus.S1	AUGUSTUS	CDS	11702643	11703039	0.97	-	2	transcript_id "Ledus.S1G118300.t1"; gene_id "Ledus.S1G118300"
Ledus.S1	AUGUSTUS	exon	11702643	11703039	.	-	.	transcript_id "Ledus.S1G118300.t1"; gene_id "Ledus.S1G118300"
Ledus.S1	AUGUSTUS	intron	11703040	11703556	.	-	.	transcript_id "Ledus.S1G118300.t1"; gene_id "Ledus.S1G118300"
Ledus.S1	AUGUSTUS	CDS	11703557	11703710	0.97	-	0	transcript_id "Ledus.S1G118300.t1"; gene_id "Ledus.S1G118300"
Ledus.S1	AUGUSTUS	exon	11703557	11703710	.	-	.	transcript_id "Ledus.S1G118300.t1"; gene_id "Ledus.S1G118300"
Ledus.S1	AUGUSTUS	start_codon	11703708	11703710	.	-	0	transcript_id "Ledus.S1G118300.t1"; gene_id "Ledus.S1G118300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6603.t1 is derived from g4046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32619369	32621396	.	-	.	Ledus.S1G402400
Ledus.S1	AUGUSTUS	transcript	32619369	32621396	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	stop_codon	32619366	32619368	.	-	0	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	CDS	32619369	32619528	1	-	1	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	exon	32619369	32619528	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	intron	32619529	32619643	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	CDS	32619644	32619705	1	-	0	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	exon	32619644	32619705	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	intron	32619706	32619780	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	CDS	32619781	32620200	1	-	0	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	exon	32619781	32620200	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	intron	32620201	32620287	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	CDS	32620288	32620659	0.99	-	0	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	exon	32620288	32620659	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	intron	32620660	32620789	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	CDS	32620790	32620847	0.53	-	1	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	exon	32620790	32620847	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	intron	32620848	32620929	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	CDS	32620930	32620974	0.27	-	1	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	exon	32620930	32620974	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	intron	32620975	32621223	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	CDS	32621224	32621396	0.32	-	0	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	exon	32621224	32621396	.	-	.	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
Ledus.S1	AUGUSTUS	start_codon	32621394	32621396	.	-	0	transcript_id "Ledus.S1G402400.t1"; gene_id "Ledus.S1G402400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6935.t1 is derived from g4379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35649289	35649597	.	-	.	Ledus.S1G435600
Ledus.S1	AUGUSTUS	transcript	35649289	35649597	.	-	.	transcript_id "Ledus.S1G435600.t1"; gene_id "Ledus.S1G435600"
Ledus.S1	AUGUSTUS	stop_codon	35649286	35649288	.	-	0	transcript_id "Ledus.S1G435600.t1"; gene_id "Ledus.S1G435600"
Ledus.S1	AUGUSTUS	CDS	35649289	35649597	0.52	-	0	transcript_id "Ledus.S1G435600.t1"; gene_id "Ledus.S1G435600"
Ledus.S1	AUGUSTUS	exon	35649289	35649597	.	-	.	transcript_id "Ledus.S1G435600.t1"; gene_id "Ledus.S1G435600"
Ledus.S1	AUGUSTUS	start_codon	35649595	35649597	.	-	0	transcript_id "Ledus.S1G435600.t1"; gene_id "Ledus.S1G435600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9757.t1 is derived from g10787.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9621733	9626318	.	+	.	Ledus.S3G123400
Ledus.S3	AUGUSTUS	transcript	9621733	9626318	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	start_codon	9621733	9621735	.	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9621733	9621996	0.84	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9621733	9621996	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	intron	9621997	9622157	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9622158	9622253	1	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9622158	9622253	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	intron	9622254	9622324	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9622325	9622408	1	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9622325	9622408	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	intron	9622409	9622631	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9622632	9622708	1	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9622632	9622708	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	intron	9622709	9622824	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9622825	9623356	1	+	1	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9622825	9623356	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	intron	9623357	9623796	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9623797	9623878	1	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9623797	9623878	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	intron	9623879	9624050	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9624051	9624166	1	+	2	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9624051	9624166	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	intron	9624167	9624317	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9624318	9624401	1	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9624318	9624401	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	intron	9624402	9624491	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9624492	9624617	1	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9624492	9624617	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	intron	9624618	9624886	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9624887	9625036	1	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9624887	9625036	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	intron	9625037	9625135	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9625136	9625183	1	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9625136	9625183	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	intron	9625184	9625356	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9625357	9625458	1	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9625357	9625458	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	intron	9625459	9625829	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	CDS	9625830	9626318	0.94	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	exon	9625830	9626318	.	+	.	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
Ledus.S3	AUGUSTUS	stop_codon	9626319	9626321	.	+	0	transcript_id "Ledus.S3G123400.t1"; gene_id "Ledus.S3G123400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10464.t1 is derived from g11494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15434776	15436114	.	-	.	Ledus.S3G194100
Ledus.S3	AUGUSTUS	transcript	15434776	15436114	.	-	.	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	stop_codon	15434773	15434775	.	-	0	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	CDS	15434776	15435001	1	-	1	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	exon	15434776	15435001	.	-	.	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	intron	15435002	15435182	.	-	.	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	CDS	15435183	15435219	0.96	-	2	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	exon	15435183	15435219	.	-	.	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	intron	15435220	15435322	.	-	.	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	CDS	15435323	15435425	1	-	0	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	exon	15435323	15435425	.	-	.	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	intron	15435426	15435506	.	-	.	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	CDS	15435507	15435654	1	-	1	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	exon	15435507	15435654	.	-	.	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	intron	15435655	15435746	.	-	.	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	CDS	15435747	15436114	0.76	-	0	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	exon	15435747	15436114	.	-	.	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
Ledus.S3	AUGUSTUS	start_codon	15436112	15436114	.	-	0	transcript_id "Ledus.S3G194100.t1"; gene_id "Ledus.S3G194100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5112.t1 is derived from g2551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21770033	21772799	.	-	.	Ledus.S1G253300
Ledus.S1	AUGUSTUS	transcript	21770033	21772799	.	-	.	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	stop_codon	21770030	21770032	.	-	0	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	CDS	21770033	21771045	0.82	-	2	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	exon	21770033	21771045	.	-	.	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	intron	21771046	21771128	.	-	.	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	CDS	21771129	21771216	0.83	-	0	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	exon	21771129	21771216	.	-	.	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	intron	21771217	21771355	.	-	.	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	CDS	21771356	21772285	0.82	-	0	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	exon	21771356	21772285	.	-	.	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	intron	21772286	21772370	.	-	.	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	CDS	21772371	21772799	1	-	0	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	exon	21772371	21772799	.	-	.	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
Ledus.S1	AUGUSTUS	start_codon	21772797	21772799	.	-	0	transcript_id "Ledus.S1G253300.t1"; gene_id "Ledus.S1G253300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8723.t1 is derived from g9753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1581649	1585302	.	+	.	Ledus.S3G020000
Ledus.S3	AUGUSTUS	transcript	1581649	1585302	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	start_codon	1581649	1581651	.	+	0	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1581649	1581698	1	+	0	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1581649	1581698	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1581699	1581938	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1581939	1582008	0.96	+	1	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1581939	1582008	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1582009	1582123	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1582124	1582164	1	+	0	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1582124	1582164	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1582165	1582324	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1582325	1582394	1	+	1	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1582325	1582394	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1582395	1582591	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1582592	1582657	0.97	+	0	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1582592	1582657	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1582658	1582770	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1582771	1582821	0.91	+	0	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1582771	1582821	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1582822	1582946	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1582947	1583086	0.97	+	0	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1582947	1583086	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1583087	1583243	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1583244	1583289	1	+	1	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1583244	1583289	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1583290	1583500	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1583501	1583526	1	+	0	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1583501	1583526	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1583527	1583639	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1583640	1583714	0.99	+	1	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1583640	1583714	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1583715	1583831	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1583832	1583885	1	+	1	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1583832	1583885	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1583886	1583973	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1583974	1584095	1	+	1	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1583974	1584095	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1584096	1584214	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1584215	1584427	0.63	+	2	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1584215	1584427	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1584428	1584517	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1584518	1584604	0.97	+	2	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1584518	1584604	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1584605	1584708	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1584709	1584857	1	+	2	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1584709	1584857	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1584858	1584930	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1584931	1585034	1	+	0	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1584931	1585034	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1585035	1585130	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1585131	1585302	1	+	1	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1585131	1585302	.	+	.	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	stop_codon	1585303	1585305	.	+	0	transcript_id "Ledus.S3G020000.t1"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	transcript	1581649	1585302	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	start_codon	1581649	1581651	.	+	0	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1581649	1581698	1	+	0	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1581649	1581698	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1581699	1581938	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1581939	1582008	0.92	+	1	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1581939	1582008	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1582009	1582123	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1582124	1582164	0.96	+	0	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1582124	1582164	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1582165	1582324	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1582325	1582394	1	+	1	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1582325	1582394	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1582395	1582591	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1582592	1582657	0.95	+	0	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1582592	1582657	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1582658	1582770	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1582771	1582821	0.93	+	0	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1582771	1582821	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1582822	1582946	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1582947	1583086	0.95	+	0	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1582947	1583086	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1583087	1583243	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1583244	1583289	1	+	1	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1583244	1583289	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1583290	1583500	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1583501	1583526	1	+	0	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1583501	1583526	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1583527	1583639	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1583640	1583714	0.99	+	1	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1583640	1583714	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1583715	1583860	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1583861	1583885	0.8	+	1	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1583861	1583885	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1583886	1583973	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1583974	1584095	0.8	+	0	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1583974	1584095	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1584096	1584258	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1584259	1584293	0.8	+	1	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1584259	1584293	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1584294	1584388	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1584389	1584427	0.93	+	2	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1584389	1584427	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1584428	1584517	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1584518	1584604	0.99	+	2	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1584518	1584604	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1584605	1584708	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1584709	1584857	1	+	2	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1584709	1584857	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1584858	1584930	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1584931	1585034	1	+	0	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1584931	1585034	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	intron	1585035	1585130	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	CDS	1585131	1585302	1	+	1	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	exon	1585131	1585302	.	+	.	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
Ledus.S3	AUGUSTUS	stop_codon	1585303	1585305	.	+	0	transcript_id "Ledus.S3G020000.t2"; gene_id "Ledus.S3G020000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1843.t1 is derived from g8706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12923219	12924331	.	+	.	Ledus.S2G172500
Ledus.S2	AUGUSTUS	transcript	12923219	12924331	.	+	.	transcript_id "Ledus.S2G172500.t1"; gene_id "Ledus.S2G172500"
Ledus.S2	AUGUSTUS	start_codon	12923219	12923221	.	+	0	transcript_id "Ledus.S2G172500.t1"; gene_id "Ledus.S2G172500"
Ledus.S2	AUGUSTUS	CDS	12923219	12924331	0.99	+	0	transcript_id "Ledus.S2G172500.t1"; gene_id "Ledus.S2G172500"
Ledus.S2	AUGUSTUS	exon	12923219	12924331	.	+	.	transcript_id "Ledus.S2G172500.t1"; gene_id "Ledus.S2G172500"
Ledus.S2	AUGUSTUS	stop_codon	12924332	12924334	.	+	0	transcript_id "Ledus.S2G172500.t1"; gene_id "Ledus.S2G172500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7068.t1 is derived from g6599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1186900	1189676	.	-	.	Ledus.C7G012900
Ledus.C7	AUGUSTUS	transcript	1186900	1189676	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	stop_codon	1186897	1186899	.	-	0	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	CDS	1186900	1187292	0.43	-	0	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	exon	1186900	1187292	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	intron	1187293	1187394	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	CDS	1187395	1187457	0.62	-	0	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	exon	1187395	1187457	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	intron	1187458	1187777	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	CDS	1187778	1187828	0.43	-	0	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	exon	1187778	1187828	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	intron	1187829	1187947	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	CDS	1187948	1188033	0.99	-	2	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	exon	1187948	1188033	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	intron	1188034	1188137	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	CDS	1188138	1188280	0.97	-	1	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	exon	1188138	1188280	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	intron	1188281	1188405	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	CDS	1188406	1188551	1	-	0	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	exon	1188406	1188551	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	intron	1188552	1188722	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	CDS	1188723	1188817	1	-	2	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	exon	1188723	1188817	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	intron	1188818	1188927	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	CDS	1188928	1188985	1	-	0	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	exon	1188928	1188985	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	intron	1188986	1189100	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	CDS	1189101	1189162	1	-	2	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	exon	1189101	1189162	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	intron	1189163	1189284	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	CDS	1189285	1189396	1	-	0	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	exon	1189285	1189396	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	intron	1189397	1189613	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	CDS	1189614	1189676	1	-	0	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	exon	1189614	1189676	.	-	.	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
Ledus.C7	AUGUSTUS	start_codon	1189674	1189676	.	-	0	transcript_id "Ledus.C7G012900.t1"; gene_id "Ledus.C7G012900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5813.t1 is derived from g3255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27067162	27068788	.	+	.	Ledus.S1G323400
Ledus.S1	AUGUSTUS	transcript	27067162	27068788	.	+	.	transcript_id "Ledus.S1G323400.t1"; gene_id "Ledus.S1G323400"
Ledus.S1	AUGUSTUS	start_codon	27067162	27067164	.	+	0	transcript_id "Ledus.S1G323400.t1"; gene_id "Ledus.S1G323400"
Ledus.S1	AUGUSTUS	CDS	27067162	27067557	0.86	+	0	transcript_id "Ledus.S1G323400.t1"; gene_id "Ledus.S1G323400"
Ledus.S1	AUGUSTUS	exon	27067162	27067557	.	+	.	transcript_id "Ledus.S1G323400.t1"; gene_id "Ledus.S1G323400"
Ledus.S1	AUGUSTUS	intron	27067558	27067641	.	+	.	transcript_id "Ledus.S1G323400.t1"; gene_id "Ledus.S1G323400"
Ledus.S1	AUGUSTUS	CDS	27067642	27068158	0.96	+	0	transcript_id "Ledus.S1G323400.t1"; gene_id "Ledus.S1G323400"
Ledus.S1	AUGUSTUS	exon	27067642	27068158	.	+	.	transcript_id "Ledus.S1G323400.t1"; gene_id "Ledus.S1G323400"
Ledus.S1	AUGUSTUS	intron	27068159	27068267	.	+	.	transcript_id "Ledus.S1G323400.t1"; gene_id "Ledus.S1G323400"
Ledus.S1	AUGUSTUS	CDS	27068268	27068788	1	+	2	transcript_id "Ledus.S1G323400.t1"; gene_id "Ledus.S1G323400"
Ledus.S1	AUGUSTUS	exon	27068268	27068788	.	+	.	transcript_id "Ledus.S1G323400.t1"; gene_id "Ledus.S1G323400"
Ledus.S1	AUGUSTUS	stop_codon	27068789	27068791	.	+	0	transcript_id "Ledus.S1G323400.t1"; gene_id "Ledus.S1G323400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5454.t1 is derived from g2893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24376167	24383662	.	+	.	Ledus.S1G287500
Ledus.S1	AUGUSTUS	transcript	24376167	24383662	.	+	.	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	start_codon	24376167	24376169	.	+	0	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	CDS	24376167	24376265	0.87	+	0	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	exon	24376167	24376265	.	+	.	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	intron	24376266	24376874	.	+	.	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	CDS	24376875	24376930	0.03	+	0	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	exon	24376875	24376930	.	+	.	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	intron	24376931	24377102	.	+	.	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	CDS	24377103	24377186	0.01	+	1	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	exon	24377103	24377186	.	+	.	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	intron	24377187	24380556	.	+	.	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	CDS	24380557	24380685	0.07	+	1	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	exon	24380557	24380685	.	+	.	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	intron	24380686	24382793	.	+	.	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	CDS	24382794	24382875	0.26	+	1	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	exon	24382794	24382875	.	+	.	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	intron	24382876	24383572	.	+	.	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	CDS	24383573	24383662	0.01	+	0	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	exon	24383573	24383662	.	+	.	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
Ledus.S1	AUGUSTUS	stop_codon	24383663	24383665	.	+	0	transcript_id "Ledus.S1G287500.t1"; gene_id "Ledus.S1G287500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8932.t1 is derived from g9962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3282979	3283191	.	-	.	Ledus.S3G040900
Ledus.S3	AUGUSTUS	transcript	3282979	3283191	.	-	.	transcript_id "Ledus.S3G040900.t1"; gene_id "Ledus.S3G040900"
Ledus.S3	AUGUSTUS	stop_codon	3282976	3282978	.	-	0	transcript_id "Ledus.S3G040900.t1"; gene_id "Ledus.S3G040900"
Ledus.S3	AUGUSTUS	CDS	3282979	3283191	0.79	-	0	transcript_id "Ledus.S3G040900.t1"; gene_id "Ledus.S3G040900"
Ledus.S3	AUGUSTUS	exon	3282979	3283191	.	-	.	transcript_id "Ledus.S3G040900.t1"; gene_id "Ledus.S3G040900"
Ledus.S3	AUGUSTUS	start_codon	3283189	3283191	.	-	0	transcript_id "Ledus.S3G040900.t1"; gene_id "Ledus.S3G040900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1207.t1 is derived from g8068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8602667	8604141	.	+	.	Ledus.S2G108900
Ledus.S2	AUGUSTUS	transcript	8602667	8604141	.	+	.	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	start_codon	8602667	8602669	.	+	0	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8602667	8602679	0.64	+	0	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8602667	8602679	.	+	.	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	intron	8602680	8602873	.	+	.	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8602874	8602928	0.55	+	2	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8602874	8602928	.	+	.	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	intron	8602929	8603078	.	+	.	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8603079	8603340	0.48	+	1	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8603079	8603340	.	+	.	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	intron	8603341	8603497	.	+	.	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8603498	8603599	1	+	0	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8603498	8603599	.	+	.	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	intron	8603600	8603688	.	+	.	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8603689	8603815	1	+	0	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8603689	8603815	.	+	.	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	intron	8603816	8603890	.	+	.	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8603891	8604141	1	+	2	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8603891	8604141	.	+	.	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	stop_codon	8604142	8604144	.	+	0	transcript_id "Ledus.S2G108900.t1"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	transcript	8602667	8604141	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	start_codon	8602667	8602669	.	+	0	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8602667	8602679	0.57	+	0	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8602667	8602679	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	intron	8602680	8602873	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8602874	8602928	0.46	+	2	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8602874	8602928	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	intron	8602929	8603078	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8603079	8603285	0.3	+	1	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8603079	8603285	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	intron	8603286	8603357	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8603358	8603418	0.65	+	1	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8603358	8603418	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	intron	8603419	8603497	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8603498	8603599	0.89	+	0	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8603498	8603599	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	intron	8603600	8603688	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8603689	8603815	1	+	0	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8603689	8603815	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	intron	8603816	8603890	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	CDS	8603891	8604141	1	+	2	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	exon	8603891	8604141	.	+	.	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
Ledus.S2	AUGUSTUS	stop_codon	8604142	8604144	.	+	0	transcript_id "Ledus.S2G108900.t2"; gene_id "Ledus.S2G108900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11942.t1 is derived from g5561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7902475	7906528	.	-	.	Ledus.S4G109800
Ledus.S4	AUGUSTUS	transcript	7902475	7906528	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	stop_codon	7902472	7902474	.	-	0	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	CDS	7902475	7902602	0.67	-	2	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	exon	7902475	7902602	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	intron	7902603	7902689	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	CDS	7902690	7902738	0.65	-	0	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	exon	7902690	7902738	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	intron	7902739	7902898	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	CDS	7902899	7902937	0.96	-	0	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	exon	7902899	7902937	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	intron	7902938	7903189	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	CDS	7903190	7903809	0.58	-	2	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	exon	7903190	7903809	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	intron	7903810	7903985	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	CDS	7903986	7904082	0.69	-	0	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	exon	7903986	7904082	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	intron	7904083	7904158	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	CDS	7904159	7905592	0.99	-	0	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	exon	7904159	7905592	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	intron	7905593	7905688	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	CDS	7905689	7906528	0.53	-	0	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	exon	7905689	7906528	.	-	.	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
Ledus.S4	AUGUSTUS	start_codon	7906526	7906528	.	-	0	transcript_id "Ledus.S4G109800.t1"; gene_id "Ledus.S4G109800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7545.t1 is derived from g12216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3782565	3783932	.	+	.	Ledus.S5G032300
Ledus.S5	AUGUSTUS	transcript	3782565	3783932	.	+	.	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	start_codon	3782565	3782567	.	+	0	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	CDS	3782565	3782927	0.51	+	0	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	exon	3782565	3782927	.	+	.	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	intron	3782928	3783020	.	+	.	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	CDS	3783021	3783222	1	+	0	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	exon	3783021	3783222	.	+	.	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	intron	3783223	3783304	.	+	.	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	CDS	3783305	3783539	1	+	2	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	exon	3783305	3783539	.	+	.	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	intron	3783540	3783616	.	+	.	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	CDS	3783617	3783932	0.99	+	1	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	exon	3783617	3783932	.	+	.	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
Ledus.S5	AUGUSTUS	stop_codon	3783933	3783935	.	+	0	transcript_id "Ledus.S5G032300.t1"; gene_id "Ledus.S5G032300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1604.t1 is derived from g8465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11319927	11325282	.	+	.	Ledus.S2G148600
Ledus.S2	AUGUSTUS	transcript	11319927	11325282	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	start_codon	11319927	11319929	.	+	0	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11319927	11319983	1	+	0	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11319927	11319983	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11319984	11320176	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11320177	11320220	1	+	0	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11320177	11320220	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11320221	11320395	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11320396	11320459	1	+	1	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11320396	11320459	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11320460	11320568	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11320569	11320686	0.51	+	0	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11320569	11320686	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11320687	11320844	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11320845	11320912	0.86	+	2	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11320845	11320912	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11320913	11321028	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11321029	11321126	1	+	0	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11321029	11321126	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11321127	11321366	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11321367	11321538	1	+	1	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11321367	11321538	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11321539	11321679	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11321680	11321899	0.91	+	0	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11321680	11321899	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11321900	11322093	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11322094	11322220	0.99	+	2	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11322094	11322220	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11322221	11322322	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11322323	11322432	1	+	1	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11322323	11322432	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11322433	11322525	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11322526	11322615	0.89	+	2	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11322526	11322615	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11322616	11322757	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11322758	11322886	0.52	+	2	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11322758	11322886	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11322887	11322976	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11322977	11323110	0.54	+	2	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11322977	11323110	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11323111	11323295	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11323296	11323412	0.92	+	0	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11323296	11323412	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11323413	11323530	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11323531	11323652	0.9	+	0	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11323531	11323652	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11323653	11323814	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11323815	11323938	0.98	+	1	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11323815	11323938	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11323939	11324052	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11324053	11324127	0.95	+	0	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11324053	11324127	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11324128	11324199	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11324200	11324245	1	+	0	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11324200	11324245	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11324246	11324397	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11324398	11324666	0.99	+	2	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11324398	11324666	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11324667	11324764	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11324765	11324957	1	+	0	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11324765	11324957	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	intron	11324958	11325070	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	CDS	11325071	11325282	0.74	+	2	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	exon	11325071	11325282	.	+	.	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
Ledus.S2	AUGUSTUS	stop_codon	11325283	11325285	.	+	0	transcript_id "Ledus.S2G148600.t1"; gene_id "Ledus.S2G148600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4307.t1 is derived from g1743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16134163	16134668	.	+	.	Ledus.S1G172800
Ledus.S1	AUGUSTUS	transcript	16134163	16134668	.	+	.	transcript_id "Ledus.S1G172800.t1"; gene_id "Ledus.S1G172800"
Ledus.S1	AUGUSTUS	start_codon	16134163	16134165	.	+	0	transcript_id "Ledus.S1G172800.t1"; gene_id "Ledus.S1G172800"
Ledus.S1	AUGUSTUS	CDS	16134163	16134309	0.36	+	0	transcript_id "Ledus.S1G172800.t1"; gene_id "Ledus.S1G172800"
Ledus.S1	AUGUSTUS	exon	16134163	16134309	.	+	.	transcript_id "Ledus.S1G172800.t1"; gene_id "Ledus.S1G172800"
Ledus.S1	AUGUSTUS	intron	16134310	16134431	.	+	.	transcript_id "Ledus.S1G172800.t1"; gene_id "Ledus.S1G172800"
Ledus.S1	AUGUSTUS	CDS	16134432	16134668	0.84	+	0	transcript_id "Ledus.S1G172800.t1"; gene_id "Ledus.S1G172800"
Ledus.S1	AUGUSTUS	exon	16134432	16134668	.	+	.	transcript_id "Ledus.S1G172800.t1"; gene_id "Ledus.S1G172800"
Ledus.S1	AUGUSTUS	stop_codon	16134669	16134671	.	+	0	transcript_id "Ledus.S1G172800.t1"; gene_id "Ledus.S1G172800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9840.t1 is derived from g10870.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10438470	10438763	.	-	.	Ledus.S3G131700
Ledus.S3	AUGUSTUS	transcript	10438470	10438763	.	-	.	transcript_id "Ledus.S3G131700.t1"; gene_id "Ledus.S3G131700"
Ledus.S3	AUGUSTUS	stop_codon	10438467	10438469	.	-	0	transcript_id "Ledus.S3G131700.t1"; gene_id "Ledus.S3G131700"
Ledus.S3	AUGUSTUS	CDS	10438470	10438763	0.43	-	0	transcript_id "Ledus.S3G131700.t1"; gene_id "Ledus.S3G131700"
Ledus.S3	AUGUSTUS	exon	10438470	10438763	.	-	.	transcript_id "Ledus.S3G131700.t1"; gene_id "Ledus.S3G131700"
Ledus.S3	AUGUSTUS	start_codon	10438761	10438763	.	-	0	transcript_id "Ledus.S3G131700.t1"; gene_id "Ledus.S3G131700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11212.t1 is derived from g4830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2755078	2757814	.	+	.	Ledus.S4G036800
Ledus.S4	AUGUSTUS	transcript	2755078	2757814	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	start_codon	2755078	2755080	.	+	0	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	CDS	2755078	2755103	0.83	+	0	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	exon	2755078	2755103	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	intron	2755104	2755233	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	CDS	2755234	2755374	0.46	+	1	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	exon	2755234	2755374	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	intron	2755375	2755555	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	CDS	2755556	2755614	0.42	+	1	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	exon	2755556	2755614	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	intron	2755615	2755920	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	CDS	2755921	2756105	0.26	+	2	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	exon	2755921	2756105	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	intron	2756106	2756191	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	CDS	2756192	2756476	0.83	+	0	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	exon	2756192	2756476	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	intron	2756477	2756568	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	CDS	2756569	2756691	1	+	0	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	exon	2756569	2756691	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	intron	2756692	2756799	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	CDS	2756800	2756852	1	+	0	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	exon	2756800	2756852	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	intron	2756853	2756951	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	CDS	2756952	2757093	0.99	+	1	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	exon	2756952	2757093	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	intron	2757094	2757198	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	CDS	2757199	2757294	0.73	+	0	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	exon	2757199	2757294	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	intron	2757295	2757397	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	CDS	2757398	2757469	1	+	0	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	exon	2757398	2757469	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	intron	2757470	2757542	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	CDS	2757543	2757629	1	+	0	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	exon	2757543	2757629	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	intron	2757630	2757715	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	CDS	2757716	2757814	0.88	+	0	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	exon	2757716	2757814	.	+	.	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
Ledus.S4	AUGUSTUS	stop_codon	2757815	2757817	.	+	0	transcript_id "Ledus.S4G036800.t1"; gene_id "Ledus.S4G036800"
# This transcript jg2445.t2 is derived from g9308.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2446.t1 is derived from g9309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18131660	18135585	.	-	.	Ledus.S2G232800
Ledus.S2	AUGUSTUS	transcript	18131660	18135585	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	stop_codon	18131657	18131659	.	-	0	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18131660	18131699	1	-	1	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18131660	18131699	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18131700	18132493	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18132494	18132585	1	-	0	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18132494	18132585	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18132586	18132679	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18132680	18132744	1	-	2	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18132680	18132744	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18132745	18132840	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18132841	18132935	1	-	1	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18132841	18132935	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18132936	18133084	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18133085	18133124	0.69	-	2	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18133085	18133124	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18133125	18133200	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18133201	18133232	0.59	-	1	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18133201	18133232	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18133233	18133464	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18133465	18133529	0.84	-	0	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18133465	18133529	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18133530	18133647	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18133648	18133729	0.9	-	1	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18133648	18133729	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18133730	18133875	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18133876	18133967	1	-	0	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18133876	18133967	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18133968	18134115	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18134116	18134248	1	-	1	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18134116	18134248	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18134249	18134492	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18134493	18134614	1	-	0	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18134493	18134614	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18134615	18134708	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18134709	18134810	1	-	0	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18134709	18134810	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18134811	18134906	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18134907	18134946	1	-	1	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18134907	18134946	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18134947	18135103	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18135104	18135175	1	-	1	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18135104	18135175	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18135176	18135249	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18135250	18135329	1	-	0	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18135250	18135329	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	intron	18135330	18135423	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	CDS	18135424	18135585	0.62	-	0	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	exon	18135424	18135585	.	-	.	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
Ledus.S2	AUGUSTUS	start_codon	18135583	18135585	.	-	0	transcript_id "Ledus.S2G232800.t1"; gene_id "Ledus.S2G232800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg660.t1 is derived from g7521.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3939447	3944132	.	-	.	Ledus.S2G054200
Ledus.S2	AUGUSTUS	transcript	3939447	3944132	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	stop_codon	3939444	3939446	.	-	0	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3939447	3939548	0.73	-	0	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3939447	3939548	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3939549	3939638	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3939639	3939736	1	-	2	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3939639	3939736	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3939737	3939826	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3939827	3940012	1	-	2	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3939827	3940012	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3940013	3940138	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3940139	3940256	1	-	0	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3940139	3940256	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3940257	3940350	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3940351	3940413	1	-	0	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3940351	3940413	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3940414	3940514	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3940515	3940598	1	-	0	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3940515	3940598	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3940599	3940756	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3940757	3940823	1	-	1	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3940757	3940823	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3940824	3940955	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3940956	3941083	1	-	0	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3940956	3941083	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3941084	3941160	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3941161	3941489	0.71	-	2	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3941161	3941489	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3941490	3941612	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3941613	3941662	1	-	1	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3941613	3941662	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3941663	3941795	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3941796	3941848	0.99	-	0	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3941796	3941848	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3941849	3941953	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3941954	3942071	0.99	-	1	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3941954	3942071	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3942072	3942165	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3942166	3942296	1	-	0	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3942166	3942296	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3942297	3942376	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3942377	3942719	0.97	-	1	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3942377	3942719	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3942720	3942951	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3942952	3943016	1	-	0	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3942952	3943016	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3943017	3943484	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3943485	3944132	0.31	-	0	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3943485	3944132	.	-	.	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	start_codon	3944130	3944132	.	-	0	transcript_id "Ledus.S2G054200.t1"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	transcript	3939447	3944132	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	stop_codon	3939444	3939446	.	-	0	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3939447	3939548	0.61	-	0	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3939447	3939548	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3939549	3939638	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3939639	3939744	0.98	-	1	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3939639	3939744	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3939745	3939826	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3939827	3939852	0.61	-	0	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3939827	3939852	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3939853	3939935	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3939936	3940012	0.55	-	2	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3939936	3940012	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3940013	3940138	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3940139	3940256	1	-	0	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3940139	3940256	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3940257	3940350	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3940351	3940413	1	-	0	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3940351	3940413	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3940414	3940514	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3940515	3940598	1	-	0	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3940515	3940598	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3940599	3940756	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3940757	3940823	1	-	1	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3940757	3940823	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3940824	3940955	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3940956	3941083	1	-	0	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3940956	3941083	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3941084	3941160	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3941161	3941489	0.78	-	2	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3941161	3941489	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3941490	3941612	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3941613	3941662	1	-	1	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3941613	3941662	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3941663	3941795	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3941796	3941848	1	-	0	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3941796	3941848	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3941849	3941953	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3941954	3942071	1	-	1	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3941954	3942071	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3942072	3942165	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3942166	3942296	1	-	0	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3942166	3942296	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3942297	3942376	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3942377	3942719	1	-	1	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3942377	3942719	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3942720	3942951	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3942952	3943016	1	-	0	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3942952	3943016	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	intron	3943017	3943484	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	CDS	3943485	3944132	0.26	-	0	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	exon	3943485	3944132	.	-	.	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
Ledus.S2	AUGUSTUS	start_codon	3944130	3944132	.	-	0	transcript_id "Ledus.S2G054200.t2"; gene_id "Ledus.S2G054200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9560.t1 is derived from g10590.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7778517	7780559	.	+	.	Ledus.S3G103700
Ledus.S3	AUGUSTUS	transcript	7778517	7780559	.	+	.	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	start_codon	7778517	7778519	.	+	0	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	CDS	7778517	7778653	0.56	+	0	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	exon	7778517	7778653	.	+	.	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	intron	7778654	7778799	.	+	.	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	CDS	7778800	7778809	0.79	+	1	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	exon	7778800	7778809	.	+	.	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	intron	7778810	7778882	.	+	.	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	CDS	7778883	7779015	0.73	+	0	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	exon	7778883	7779015	.	+	.	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	intron	7779016	7779101	.	+	.	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	CDS	7779102	7779658	0.73	+	2	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	exon	7779102	7779658	.	+	.	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	intron	7779659	7779752	.	+	.	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	CDS	7779753	7780559	1	+	0	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	exon	7779753	7780559	.	+	.	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
Ledus.S3	AUGUSTUS	stop_codon	7780560	7780562	.	+	0	transcript_id "Ledus.S3G103700.t1"; gene_id "Ledus.S3G103700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10782.t1 is derived from g11814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17614898	17621275	.	-	.	Ledus.S3G225900
Ledus.S3	AUGUSTUS	transcript	17614898	17621275	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	stop_codon	17614895	17614897	.	-	0	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17614898	17615634	1	-	2	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17614898	17615634	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	intron	17615635	17615939	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17615940	17616222	1	-	0	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17615940	17616222	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	intron	17616223	17616367	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17616368	17616425	1	-	1	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17616368	17616425	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	intron	17616426	17616585	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17616586	17616656	1	-	0	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17616586	17616656	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	intron	17616657	17616825	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17616826	17616900	1	-	0	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17616826	17616900	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	intron	17616901	17616999	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17617000	17617749	0.95	-	0	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17617000	17617749	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	intron	17617750	17618085	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17618086	17618148	1	-	0	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17618086	17618148	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	intron	17618149	17618306	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17618307	17618395	1	-	2	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17618307	17618395	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	intron	17618396	17618568	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17618569	17618631	1	-	2	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17618569	17618631	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	intron	17618632	17618754	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17618755	17618861	1	-	1	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17618755	17618861	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	intron	17618862	17618992	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17618993	17619799	1	-	1	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17618993	17619799	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	intron	17619800	17619941	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17619942	17620505	1	-	1	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17619942	17620505	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	intron	17620506	17620793	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	CDS	17620794	17621275	1	-	0	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	exon	17620794	17621275	.	-	.	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
Ledus.S3	AUGUSTUS	start_codon	17621273	17621275	.	-	0	transcript_id "Ledus.S3G225900.t1"; gene_id "Ledus.S3G225900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9706.t1 is derived from g10736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9208623	9209150	.	+	.	Ledus.S3G118300
Ledus.S3	AUGUSTUS	transcript	9208623	9209150	.	+	.	transcript_id "Ledus.S3G118300.t1"; gene_id "Ledus.S3G118300"
Ledus.S3	AUGUSTUS	start_codon	9208623	9208625	.	+	0	transcript_id "Ledus.S3G118300.t1"; gene_id "Ledus.S3G118300"
Ledus.S3	AUGUSTUS	CDS	9208623	9208938	0.15	+	0	transcript_id "Ledus.S3G118300.t1"; gene_id "Ledus.S3G118300"
Ledus.S3	AUGUSTUS	exon	9208623	9208938	.	+	.	transcript_id "Ledus.S3G118300.t1"; gene_id "Ledus.S3G118300"
Ledus.S3	AUGUSTUS	intron	9208939	9209070	.	+	.	transcript_id "Ledus.S3G118300.t1"; gene_id "Ledus.S3G118300"
Ledus.S3	AUGUSTUS	CDS	9209071	9209150	0.01	+	2	transcript_id "Ledus.S3G118300.t1"; gene_id "Ledus.S3G118300"
Ledus.S3	AUGUSTUS	exon	9209071	9209150	.	+	.	transcript_id "Ledus.S3G118300.t1"; gene_id "Ledus.S3G118300"
Ledus.S3	AUGUSTUS	stop_codon	9209151	9209153	.	+	0	transcript_id "Ledus.S3G118300.t1"; gene_id "Ledus.S3G118300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5612.t1 is derived from g3051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25373263	25375363	.	-	.	Ledus.S1G303300
Ledus.S1	AUGUSTUS	transcript	25373263	25375363	.	-	.	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	stop_codon	25373260	25373262	.	-	0	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	CDS	25373263	25373453	0.73	-	2	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	exon	25373263	25373453	.	-	.	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	intron	25373454	25373696	.	-	.	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	CDS	25373697	25373927	0.67	-	2	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	exon	25373697	25373927	.	-	.	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	intron	25373928	25374196	.	-	.	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	CDS	25374197	25374799	0.26	-	2	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	exon	25374197	25374799	.	-	.	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	intron	25374800	25374945	.	-	.	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	CDS	25374946	25375363	0.69	-	0	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	exon	25374946	25375363	.	-	.	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
Ledus.S1	AUGUSTUS	start_codon	25375361	25375363	.	-	0	transcript_id "Ledus.S1G303300.t1"; gene_id "Ledus.S1G303300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11672.t1 is derived from g5291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5865113	5868033	.	-	.	Ledus.S4G082800
Ledus.S4	AUGUSTUS	transcript	5865113	5868033	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	stop_codon	5865110	5865112	.	-	0	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5865113	5865238	0.83	-	0	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5865113	5865238	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5865239	5865406	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5865407	5865544	0.81	-	0	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5865407	5865544	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5865545	5865670	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5865671	5865794	1	-	1	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5865671	5865794	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5865795	5865876	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5865877	5865941	0.91	-	0	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5865877	5865941	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5865942	5866026	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5866027	5866083	0.88	-	0	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5866027	5866083	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5866084	5866178	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5866179	5866343	0.98	-	0	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5866179	5866343	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5866344	5866469	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5866470	5866529	0.98	-	0	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5866470	5866529	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5866530	5866606	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5866607	5866747	0.96	-	0	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5866607	5866747	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5866748	5866979	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5866980	5867026	0.54	-	2	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5866980	5867026	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5867027	5867116	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5867117	5867347	0.69	-	2	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5867117	5867347	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5867348	5867431	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5867432	5867504	0.43	-	0	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5867432	5867504	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5867505	5867594	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5867595	5867733	1	-	1	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5867595	5867733	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5867734	5867870	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5867871	5867886	1	-	2	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5867871	5867886	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	intron	5867887	5868008	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	CDS	5868009	5868033	0.92	-	0	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	exon	5868009	5868033	.	-	.	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
Ledus.S4	AUGUSTUS	start_codon	5868031	5868033	.	-	0	transcript_id "Ledus.S4G082800.t1"; gene_id "Ledus.S4G082800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9514.t1 is derived from g10544.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7531589	7534866	.	-	.	Ledus.S3G099100
Ledus.S3	AUGUSTUS	transcript	7531589	7534866	.	-	.	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	stop_codon	7531586	7531588	.	-	0	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	CDS	7531589	7531691	0.61	-	1	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	exon	7531589	7531691	.	-	.	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	intron	7531692	7531935	.	-	.	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	CDS	7531936	7531955	0.36	-	0	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	exon	7531936	7531955	.	-	.	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	intron	7531956	7532396	.	-	.	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	CDS	7532397	7532749	0.47	-	2	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	exon	7532397	7532749	.	-	.	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	intron	7532750	7532894	.	-	.	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	CDS	7532895	7534269	1	-	0	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	exon	7532895	7534269	.	-	.	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	intron	7534270	7534434	.	-	.	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	CDS	7534435	7534866	0.87	-	0	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	exon	7534435	7534866	.	-	.	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
Ledus.S3	AUGUSTUS	start_codon	7534864	7534866	.	-	0	transcript_id "Ledus.S3G099100.t1"; gene_id "Ledus.S3G099100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6824.t1 is derived from g4268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34510763	34511761	.	-	.	Ledus.S1G424500
Ledus.S1	AUGUSTUS	transcript	34510763	34511761	.	-	.	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	stop_codon	34510760	34510762	.	-	0	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	CDS	34510763	34510783	0.41	-	0	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	exon	34510763	34510783	.	-	.	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	intron	34510784	34511000	.	-	.	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	CDS	34511001	34511106	1	-	1	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	exon	34511001	34511106	.	-	.	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	intron	34511107	34511202	.	-	.	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	CDS	34511203	34511296	1	-	2	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	exon	34511203	34511296	.	-	.	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	intron	34511297	34511402	.	-	.	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	CDS	34511403	34511495	0.93	-	2	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	exon	34511403	34511495	.	-	.	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	intron	34511496	34511583	.	-	.	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	CDS	34511584	34511761	0.15	-	0	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	exon	34511584	34511761	.	-	.	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
Ledus.S1	AUGUSTUS	start_codon	34511759	34511761	.	-	0	transcript_id "Ledus.S1G424500.t1"; gene_id "Ledus.S1G424500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11708.t1 is derived from g5327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6154676	6154912	.	+	.	Ledus.S4G086400
Ledus.S4	AUGUSTUS	transcript	6154676	6154912	.	+	.	transcript_id "Ledus.S4G086400.t1"; gene_id "Ledus.S4G086400"
Ledus.S4	AUGUSTUS	start_codon	6154676	6154678	.	+	0	transcript_id "Ledus.S4G086400.t1"; gene_id "Ledus.S4G086400"
Ledus.S4	AUGUSTUS	CDS	6154676	6154912	0.93	+	0	transcript_id "Ledus.S4G086400.t1"; gene_id "Ledus.S4G086400"
Ledus.S4	AUGUSTUS	exon	6154676	6154912	.	+	.	transcript_id "Ledus.S4G086400.t1"; gene_id "Ledus.S4G086400"
Ledus.S4	AUGUSTUS	stop_codon	6154913	6154915	.	+	0	transcript_id "Ledus.S4G086400.t1"; gene_id "Ledus.S4G086400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12019.t1 is derived from g5638.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8774301	8775959	.	+	.	Ledus.S4G117500
Ledus.S4	AUGUSTUS	transcript	8774301	8775959	.	+	.	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	start_codon	8774301	8774303	.	+	0	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	CDS	8774301	8774360	0.96	+	0	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	exon	8774301	8774360	.	+	.	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	intron	8774361	8774690	.	+	.	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	CDS	8774691	8774776	0.75	+	0	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	exon	8774691	8774776	.	+	.	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	intron	8774777	8774862	.	+	.	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	CDS	8774863	8775485	0.75	+	1	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	exon	8774863	8775485	.	+	.	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	intron	8775486	8775948	.	+	.	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	CDS	8775949	8775959	1	+	2	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	exon	8775949	8775959	.	+	.	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	stop_codon	8775960	8775962	.	+	0	transcript_id "Ledus.S4G117500.t1"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	transcript	8774301	8775664	.	+	.	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	start_codon	8774301	8774303	.	+	0	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	CDS	8774301	8774360	0.98	+	0	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	exon	8774301	8774360	.	+	.	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	intron	8774361	8774690	.	+	.	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	CDS	8774691	8774776	0.64	+	0	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	exon	8774691	8774776	.	+	.	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	intron	8774777	8774862	.	+	.	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	CDS	8774863	8775485	0.64	+	1	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	exon	8774863	8775485	.	+	.	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	intron	8775486	8775632	.	+	.	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	CDS	8775633	8775664	1	+	2	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	exon	8775633	8775664	.	+	.	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
Ledus.S4	AUGUSTUS	stop_codon	8775665	8775667	.	+	0	transcript_id "Ledus.S4G117500.t2"; gene_id "Ledus.S4G117500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10888.t1 is derived from g4506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	326578	328557	.	-	.	Ledus.S4G004400
Ledus.S4	AUGUSTUS	transcript	326578	327838	.	-	.	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	stop_codon	326575	326577	.	-	0	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	326578	326697	1	-	0	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	326578	326697	.	-	.	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	326698	326794	.	-	.	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	326795	326881	1	-	0	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	326795	326881	.	-	.	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	326882	326964	.	-	.	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	326965	327188	1	-	2	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	326965	327188	.	-	.	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	327189	327265	.	-	.	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	327266	327569	1	-	0	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	327266	327569	.	-	.	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	327570	327650	.	-	.	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	327651	327749	1	-	0	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	327651	327749	.	-	.	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	327750	327832	.	-	.	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	327833	327838	0.78	-	0	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	327833	327838	.	-	.	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	start_codon	327836	327838	.	-	0	transcript_id "Ledus.S4G004400.t1"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	transcript	326578	328557	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	stop_codon	326575	326577	.	-	0	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	326578	326697	1	-	0	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	326578	326697	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	326698	326794	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	326795	326881	1	-	0	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	326795	326881	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	326882	326964	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	326965	327188	1	-	2	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	326965	327188	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	327189	327265	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	327266	327569	1	-	0	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	327266	327569	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	327570	327650	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	327651	327749	1	-	0	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	327651	327749	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	327750	327832	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	327833	327967	1	-	0	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	327833	327967	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	327968	328068	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	328069	328169	0.92	-	2	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	328069	328169	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	328170	328248	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	328249	328326	0.82	-	2	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	328249	328326	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	intron	328327	328469	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	CDS	328470	328557	0.52	-	0	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	exon	328470	328557	.	-	.	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
Ledus.S4	AUGUSTUS	start_codon	328555	328557	.	-	0	transcript_id "Ledus.S4G004400.t2"; gene_id "Ledus.S4G004400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11826.t1 is derived from g5445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7106549	7107693	.	+	.	Ledus.S4G098200
Ledus.S4	AUGUSTUS	transcript	7106549	7107693	.	+	.	transcript_id "Ledus.S4G098200.t1"; gene_id "Ledus.S4G098200"
Ledus.S4	AUGUSTUS	start_codon	7106549	7106551	.	+	0	transcript_id "Ledus.S4G098200.t1"; gene_id "Ledus.S4G098200"
Ledus.S4	AUGUSTUS	CDS	7106549	7106744	0.57	+	0	transcript_id "Ledus.S4G098200.t1"; gene_id "Ledus.S4G098200"
Ledus.S4	AUGUSTUS	exon	7106549	7106744	.	+	.	transcript_id "Ledus.S4G098200.t1"; gene_id "Ledus.S4G098200"
Ledus.S4	AUGUSTUS	intron	7106745	7106841	.	+	.	transcript_id "Ledus.S4G098200.t1"; gene_id "Ledus.S4G098200"
Ledus.S4	AUGUSTUS	CDS	7106842	7107083	0.78	+	2	transcript_id "Ledus.S4G098200.t1"; gene_id "Ledus.S4G098200"
Ledus.S4	AUGUSTUS	exon	7106842	7107083	.	+	.	transcript_id "Ledus.S4G098200.t1"; gene_id "Ledus.S4G098200"
Ledus.S4	AUGUSTUS	intron	7107084	7107603	.	+	.	transcript_id "Ledus.S4G098200.t1"; gene_id "Ledus.S4G098200"
Ledus.S4	AUGUSTUS	CDS	7107604	7107693	0.78	+	0	transcript_id "Ledus.S4G098200.t1"; gene_id "Ledus.S4G098200"
Ledus.S4	AUGUSTUS	exon	7107604	7107693	.	+	.	transcript_id "Ledus.S4G098200.t1"; gene_id "Ledus.S4G098200"
Ledus.S4	AUGUSTUS	stop_codon	7107694	7107696	.	+	0	transcript_id "Ledus.S4G098200.t1"; gene_id "Ledus.S4G098200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8573.t1 is derived from g9603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	247637	247933	.	+	.	Ledus.S3G005000
Ledus.S3	AUGUSTUS	transcript	247637	247933	.	+	.	transcript_id "Ledus.S3G005000.t1"; gene_id "Ledus.S3G005000"
Ledus.S3	AUGUSTUS	start_codon	247637	247639	.	+	0	transcript_id "Ledus.S3G005000.t1"; gene_id "Ledus.S3G005000"
Ledus.S3	AUGUSTUS	CDS	247637	247933	0.65	+	0	transcript_id "Ledus.S3G005000.t1"; gene_id "Ledus.S3G005000"
Ledus.S3	AUGUSTUS	exon	247637	247933	.	+	.	transcript_id "Ledus.S3G005000.t1"; gene_id "Ledus.S3G005000"
Ledus.S3	AUGUSTUS	stop_codon	247934	247936	.	+	0	transcript_id "Ledus.S3G005000.t1"; gene_id "Ledus.S3G005000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12009.t1 is derived from g5628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8660435	8661809	.	+	.	Ledus.S4G116500
Ledus.S4	AUGUSTUS	transcript	8660435	8661809	.	+	.	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	start_codon	8660435	8660437	.	+	0	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	CDS	8660435	8660886	0.88	+	0	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	exon	8660435	8660886	.	+	.	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	intron	8660887	8660981	.	+	.	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	CDS	8660982	8661143	0.97	+	1	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	exon	8660982	8661143	.	+	.	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	intron	8661144	8661229	.	+	.	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	CDS	8661230	8661475	0.99	+	1	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	exon	8661230	8661475	.	+	.	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	intron	8661476	8661556	.	+	.	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	CDS	8661557	8661701	1	+	1	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	exon	8661557	8661701	.	+	.	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	intron	8661702	8661782	.	+	.	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	CDS	8661783	8661809	1	+	0	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	exon	8661783	8661809	.	+	.	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
Ledus.S4	AUGUSTUS	stop_codon	8661810	8661812	.	+	0	transcript_id "Ledus.S4G116500.t1"; gene_id "Ledus.S4G116500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4150.t1 is derived from g1586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14968273	14970711	.	-	.	Ledus.S1G157100
Ledus.S1	AUGUSTUS	transcript	14968273	14970711	.	-	.	transcript_id "Ledus.S1G157100.t1"; gene_id "Ledus.S1G157100"
Ledus.S1	AUGUSTUS	stop_codon	14968270	14968272	.	-	0	transcript_id "Ledus.S1G157100.t1"; gene_id "Ledus.S1G157100"
Ledus.S1	AUGUSTUS	CDS	14968273	14969579	0.86	-	2	transcript_id "Ledus.S1G157100.t1"; gene_id "Ledus.S1G157100"
Ledus.S1	AUGUSTUS	exon	14968273	14969579	.	-	.	transcript_id "Ledus.S1G157100.t1"; gene_id "Ledus.S1G157100"
Ledus.S1	AUGUSTUS	intron	14969580	14969685	.	-	.	transcript_id "Ledus.S1G157100.t1"; gene_id "Ledus.S1G157100"
Ledus.S1	AUGUSTUS	CDS	14969686	14969754	0.92	-	2	transcript_id "Ledus.S1G157100.t1"; gene_id "Ledus.S1G157100"
Ledus.S1	AUGUSTUS	exon	14969686	14969754	.	-	.	transcript_id "Ledus.S1G157100.t1"; gene_id "Ledus.S1G157100"
Ledus.S1	AUGUSTUS	intron	14969755	14969972	.	-	.	transcript_id "Ledus.S1G157100.t1"; gene_id "Ledus.S1G157100"
Ledus.S1	AUGUSTUS	CDS	14969973	14970711	0.85	-	0	transcript_id "Ledus.S1G157100.t1"; gene_id "Ledus.S1G157100"
Ledus.S1	AUGUSTUS	exon	14969973	14970711	.	-	.	transcript_id "Ledus.S1G157100.t1"; gene_id "Ledus.S1G157100"
Ledus.S1	AUGUSTUS	start_codon	14970709	14970711	.	-	0	transcript_id "Ledus.S1G157100.t1"; gene_id "Ledus.S1G157100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11850.t1 is derived from g5469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7299772	7300645	.	+	.	Ledus.S4G100600
Ledus.S4	AUGUSTUS	transcript	7299772	7300645	.	+	.	transcript_id "Ledus.S4G100600.t1"; gene_id "Ledus.S4G100600"
Ledus.S4	AUGUSTUS	start_codon	7299772	7299774	.	+	0	transcript_id "Ledus.S4G100600.t1"; gene_id "Ledus.S4G100600"
Ledus.S4	AUGUSTUS	CDS	7299772	7299909	1	+	0	transcript_id "Ledus.S4G100600.t1"; gene_id "Ledus.S4G100600"
Ledus.S4	AUGUSTUS	exon	7299772	7299909	.	+	.	transcript_id "Ledus.S4G100600.t1"; gene_id "Ledus.S4G100600"
Ledus.S4	AUGUSTUS	intron	7299910	7300214	.	+	.	transcript_id "Ledus.S4G100600.t1"; gene_id "Ledus.S4G100600"
Ledus.S4	AUGUSTUS	CDS	7300215	7300364	1	+	0	transcript_id "Ledus.S4G100600.t1"; gene_id "Ledus.S4G100600"
Ledus.S4	AUGUSTUS	exon	7300215	7300364	.	+	.	transcript_id "Ledus.S4G100600.t1"; gene_id "Ledus.S4G100600"
Ledus.S4	AUGUSTUS	intron	7300365	7300582	.	+	.	transcript_id "Ledus.S4G100600.t1"; gene_id "Ledus.S4G100600"
Ledus.S4	AUGUSTUS	CDS	7300583	7300645	1	+	0	transcript_id "Ledus.S4G100600.t1"; gene_id "Ledus.S4G100600"
Ledus.S4	AUGUSTUS	exon	7300583	7300645	.	+	.	transcript_id "Ledus.S4G100600.t1"; gene_id "Ledus.S4G100600"
Ledus.S4	AUGUSTUS	stop_codon	7300646	7300648	.	+	0	transcript_id "Ledus.S4G100600.t1"; gene_id "Ledus.S4G100600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7168.t1 is derived from g6699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1933281	1939290	.	+	.	Ledus.C7G022900
Ledus.C7	AUGUSTUS	transcript	1933281	1939290	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	start_codon	1933281	1933283	.	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1933281	1934383	0.83	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1933281	1934383	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1934384	1934484	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1934485	1934923	1	+	1	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1934485	1934923	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1934924	1935014	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1935015	1935215	0.92	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1935015	1935215	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1935216	1935318	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1935319	1935612	0.99	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1935319	1935612	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1935613	1935748	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1935749	1936024	0.63	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1935749	1936024	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1936025	1936125	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1936126	1936206	0.9	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1936126	1936206	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1936207	1936382	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1936383	1936514	1	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1936383	1936514	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1936515	1936596	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1936597	1936770	1	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1936597	1936770	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1936771	1936848	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1936849	1936970	1	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1936849	1936970	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1936971	1937096	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1937097	1937298	0.99	+	1	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1937097	1937298	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1937299	1937415	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1937416	1937544	1	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1937416	1937544	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1937545	1937670	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1937671	1937853	1	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1937671	1937853	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1937854	1937940	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1937941	1938060	1	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1937941	1938060	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1938061	1938189	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1938190	1938375	1	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1938190	1938375	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1938376	1938534	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1938535	1938609	1	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1938535	1938609	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1938610	1938698	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1938699	1938758	1	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1938699	1938758	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1938759	1938851	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1938852	1938959	1	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1938852	1938959	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1938960	1939045	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1939046	1939126	1	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1939046	1939126	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	intron	1939127	1939221	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	CDS	1939222	1939290	1	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	exon	1939222	1939290	.	+	.	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
Ledus.C7	AUGUSTUS	stop_codon	1939291	1939293	.	+	0	transcript_id "Ledus.C7G022900.t1"; gene_id "Ledus.C7G022900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2373.t1 is derived from g9236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17711437	17713117	.	+	.	Ledus.S2G225500
Ledus.S2	AUGUSTUS	transcript	17711437	17713117	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	start_codon	17711437	17711439	.	+	0	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	CDS	17711437	17711601	0.99	+	0	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	exon	17711437	17711601	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	intron	17711602	17711743	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	CDS	17711744	17711817	1	+	0	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	exon	17711744	17711817	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	intron	17711818	17711905	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	CDS	17711906	17712009	1	+	1	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	exon	17711906	17712009	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	intron	17712010	17712140	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	CDS	17712141	17712160	0.99	+	2	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	exon	17712141	17712160	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	intron	17712161	17712369	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	CDS	17712370	17712421	1	+	0	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	exon	17712370	17712421	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	intron	17712422	17712495	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	CDS	17712496	17712924	0.98	+	2	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	exon	17712496	17712924	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	intron	17712925	17713019	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	CDS	17713020	17713117	0.99	+	2	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	exon	17713020	17713117	.	+	.	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
Ledus.S2	AUGUSTUS	stop_codon	17713118	17713120	.	+	0	transcript_id "Ledus.S2G225500.t1"; gene_id "Ledus.S2G225500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6992.t1 is derived from g6523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	603974	609052	.	-	.	Ledus.C7G005300
Ledus.C7	AUGUSTUS	transcript	603974	609052	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	stop_codon	603971	603973	.	-	0	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	CDS	603974	604100	0.99	-	1	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	exon	603974	604100	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	intron	604101	604319	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	CDS	604320	604357	0.95	-	0	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	exon	604320	604357	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	intron	604358	604437	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	CDS	604438	604524	0.94	-	0	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	exon	604438	604524	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	intron	604525	604641	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	CDS	604642	604705	0.73	-	1	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	exon	604642	604705	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	intron	604706	604881	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	CDS	604882	605442	1	-	1	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	exon	604882	605442	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	intron	605443	605779	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	CDS	605780	606018	1	-	0	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	exon	605780	606018	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	intron	606019	606202	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	CDS	606203	606282	1	-	2	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	exon	606203	606282	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	intron	606283	606717	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	CDS	606718	606795	1	-	2	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	exon	606718	606795	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	intron	606796	606936	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	CDS	606937	607137	1	-	2	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	exon	606937	607137	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	intron	607138	607383	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	CDS	607384	608761	0.98	-	0	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	exon	607384	608761	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	intron	608762	608968	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	CDS	608969	609052	0.94	-	0	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	exon	608969	609052	.	-	.	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
Ledus.C7	AUGUSTUS	start_codon	609050	609052	.	-	0	transcript_id "Ledus.C7G005300.t1"; gene_id "Ledus.C7G005300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3528.t1 is derived from g964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9162850	9163431	.	-	.	Ledus.S1G094900
Ledus.S1	AUGUSTUS	transcript	9162850	9163431	.	-	.	transcript_id "Ledus.S1G094900.t1"; gene_id "Ledus.S1G094900"
Ledus.S1	AUGUSTUS	stop_codon	9162847	9162849	.	-	0	transcript_id "Ledus.S1G094900.t1"; gene_id "Ledus.S1G094900"
Ledus.S1	AUGUSTUS	CDS	9162850	9163431	0.99	-	0	transcript_id "Ledus.S1G094900.t1"; gene_id "Ledus.S1G094900"
Ledus.S1	AUGUSTUS	exon	9162850	9163431	.	-	.	transcript_id "Ledus.S1G094900.t1"; gene_id "Ledus.S1G094900"
Ledus.S1	AUGUSTUS	start_codon	9163429	9163431	.	-	0	transcript_id "Ledus.S1G094900.t1"; gene_id "Ledus.S1G094900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2252.t1 is derived from g9115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16491402	16492346	.	+	.	Ledus.S2G213400
Ledus.S2	AUGUSTUS	transcript	16491402	16492346	.	+	.	transcript_id "Ledus.S2G213400.t1"; gene_id "Ledus.S2G213400"
Ledus.S2	AUGUSTUS	start_codon	16491402	16491404	.	+	0	transcript_id "Ledus.S2G213400.t1"; gene_id "Ledus.S2G213400"
Ledus.S2	AUGUSTUS	CDS	16491402	16491599	0.31	+	0	transcript_id "Ledus.S2G213400.t1"; gene_id "Ledus.S2G213400"
Ledus.S2	AUGUSTUS	exon	16491402	16491599	.	+	.	transcript_id "Ledus.S2G213400.t1"; gene_id "Ledus.S2G213400"
Ledus.S2	AUGUSTUS	intron	16491600	16491827	.	+	.	transcript_id "Ledus.S2G213400.t1"; gene_id "Ledus.S2G213400"
Ledus.S2	AUGUSTUS	CDS	16491828	16491905	0.93	+	0	transcript_id "Ledus.S2G213400.t1"; gene_id "Ledus.S2G213400"
Ledus.S2	AUGUSTUS	exon	16491828	16491905	.	+	.	transcript_id "Ledus.S2G213400.t1"; gene_id "Ledus.S2G213400"
Ledus.S2	AUGUSTUS	intron	16491906	16491986	.	+	.	transcript_id "Ledus.S2G213400.t1"; gene_id "Ledus.S2G213400"
Ledus.S2	AUGUSTUS	CDS	16491987	16492346	0.74	+	0	transcript_id "Ledus.S2G213400.t1"; gene_id "Ledus.S2G213400"
Ledus.S2	AUGUSTUS	exon	16491987	16492346	.	+	.	transcript_id "Ledus.S2G213400.t1"; gene_id "Ledus.S2G213400"
Ledus.S2	AUGUSTUS	stop_codon	16492347	16492349	.	+	0	transcript_id "Ledus.S2G213400.t1"; gene_id "Ledus.S2G213400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5657.t1 is derived from g3096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25609011	25612112	.	-	.	Ledus.S1G307800
Ledus.S1	AUGUSTUS	transcript	25609011	25612112	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	stop_codon	25609008	25609010	.	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25609011	25609130	0.55	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25609011	25609130	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25609131	25609212	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25609213	25609253	1	-	2	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25609213	25609253	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25609254	25609369	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25609370	25609432	0.98	-	2	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25609370	25609432	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25609433	25609524	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25609525	25609613	1	-	1	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25609525	25609613	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25609614	25609696	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25609697	25609791	1	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25609697	25609791	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25609792	25609883	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25609884	25609955	1	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25609884	25609955	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25609956	25610029	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25610030	25610110	1	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25610030	25610110	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25610111	25610251	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25610252	25610341	1	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25610252	25610341	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25610342	25610437	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25610438	25610539	1	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25610438	25610539	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25610540	25610660	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25610661	25610750	1	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25610661	25610750	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25610751	25610822	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25610823	25610907	1	-	1	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25610823	25610907	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25610908	25611024	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25611025	25611146	1	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25611025	25611146	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25611147	25611273	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25611274	25611345	1	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25611274	25611345	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25611346	25611438	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25611439	25611516	1	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25611439	25611516	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25611517	25611656	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25611657	25611756	0.99	-	1	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25611657	25611756	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	intron	25611757	25611867	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	CDS	25611868	25612112	0.68	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	exon	25611868	25612112	.	-	.	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
Ledus.S1	AUGUSTUS	start_codon	25612110	25612112	.	-	0	transcript_id "Ledus.S1G307800.t1"; gene_id "Ledus.S1G307800"
# This transcript jg12017.t2 is derived from g5636.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12018.t1 is derived from g5637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8726534	8727588	.	-	.	Ledus.S4G117400
Ledus.S4	AUGUSTUS	transcript	8726534	8727588	.	-	.	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	stop_codon	8726531	8726533	.	-	0	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	CDS	8726534	8726633	0.57	-	1	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	exon	8726534	8726633	.	-	.	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	intron	8726634	8726770	.	-	.	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	CDS	8726771	8726886	1	-	0	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	exon	8726771	8726886	.	-	.	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	intron	8726887	8726966	.	-	.	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	CDS	8726967	8727038	1	-	0	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	exon	8726967	8727038	.	-	.	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	intron	8727039	8727177	.	-	.	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	CDS	8727178	8727238	1	-	1	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	exon	8727178	8727238	.	-	.	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	intron	8727239	8727325	.	-	.	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	CDS	8727326	8727588	0.58	-	0	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	exon	8727326	8727588	.	-	.	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
Ledus.S4	AUGUSTUS	start_codon	8727586	8727588	.	-	0	transcript_id "Ledus.S4G117400.t1"; gene_id "Ledus.S4G117400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3791.t1 is derived from g1227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12198497	12199902	.	-	.	Ledus.S1G121200
Ledus.S1	AUGUSTUS	transcript	12198497	12199902	.	-	.	transcript_id "Ledus.S1G121200.t1"; gene_id "Ledus.S1G121200"
Ledus.S1	AUGUSTUS	stop_codon	12198494	12198496	.	-	0	transcript_id "Ledus.S1G121200.t1"; gene_id "Ledus.S1G121200"
Ledus.S1	AUGUSTUS	CDS	12198497	12199416	0.28	-	2	transcript_id "Ledus.S1G121200.t1"; gene_id "Ledus.S1G121200"
Ledus.S1	AUGUSTUS	exon	12198497	12199416	.	-	.	transcript_id "Ledus.S1G121200.t1"; gene_id "Ledus.S1G121200"
Ledus.S1	AUGUSTUS	intron	12199417	12199535	.	-	.	transcript_id "Ledus.S1G121200.t1"; gene_id "Ledus.S1G121200"
Ledus.S1	AUGUSTUS	CDS	12199536	12199902	0.3	-	0	transcript_id "Ledus.S1G121200.t1"; gene_id "Ledus.S1G121200"
Ledus.S1	AUGUSTUS	exon	12199536	12199902	.	-	.	transcript_id "Ledus.S1G121200.t1"; gene_id "Ledus.S1G121200"
Ledus.S1	AUGUSTUS	start_codon	12199900	12199902	.	-	0	transcript_id "Ledus.S1G121200.t1"; gene_id "Ledus.S1G121200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4185.t1 is derived from g1621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15244104	15245005	.	+	.	Ledus.S1G160600
Ledus.S1	AUGUSTUS	transcript	15244104	15245005	.	+	.	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	start_codon	15244104	15244106	.	+	0	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	CDS	15244104	15244220	0.68	+	0	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	exon	15244104	15244220	.	+	.	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	intron	15244221	15244293	.	+	.	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	CDS	15244294	15244348	0.77	+	0	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	exon	15244294	15244348	.	+	.	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	intron	15244349	15244455	.	+	.	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	CDS	15244456	15244624	0.86	+	2	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	exon	15244456	15244624	.	+	.	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	intron	15244625	15244716	.	+	.	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	CDS	15244717	15244765	0.98	+	1	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	exon	15244717	15244765	.	+	.	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	intron	15244766	15244930	.	+	.	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	CDS	15244931	15245005	0.72	+	0	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	exon	15244931	15245005	.	+	.	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
Ledus.S1	AUGUSTUS	stop_codon	15245006	15245008	.	+	0	transcript_id "Ledus.S1G160600.t1"; gene_id "Ledus.S1G160600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg4595.t1 is derived from g2032.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17985294	17989656	.	-	.	Ledus.S1G201600
Ledus.S1	AUGUSTUS	transcript	17985294	17989656	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	stop_codon	17985291	17985293	.	-	0	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17985294	17985387	1	-	1	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17985294	17985387	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17985388	17985658	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17985659	17985768	1	-	0	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17985659	17985768	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17985769	17986574	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17986575	17986739	1	-	0	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17986575	17986739	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17986740	17986909	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17986910	17987006	1	-	1	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17986910	17987006	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17987007	17987088	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17987089	17987219	1	-	0	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17987089	17987219	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17987220	17987329	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17987330	17987436	1	-	2	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17987330	17987436	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17987437	17988541	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17988542	17988995	1	-	0	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17988542	17988995	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17988996	17989458	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17989459	17989656	0.75	-	0	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17989459	17989656	.	-	.	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	start_codon	17989654	17989656	.	-	0	transcript_id "Ledus.S1G201600.t1"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	transcript	17985294	17989656	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	stop_codon	17985291	17985293	.	-	0	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17985294	17985387	1	-	1	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17985294	17985387	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17985388	17985658	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17985659	17985768	1	-	0	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17985659	17985768	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17985769	17986574	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17986575	17986745	1	-	0	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17986575	17986745	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17986746	17986909	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17986910	17987006	1	-	1	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17986910	17987006	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17987007	17987088	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17987089	17987219	1	-	0	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17987089	17987219	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17987220	17987329	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17987330	17987436	1	-	2	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17987330	17987436	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17987437	17988541	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17988542	17988995	0.99	-	0	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17988542	17988995	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17988996	17989458	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17989459	17989656	0.73	-	0	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17989459	17989656	.	-	.	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	start_codon	17989654	17989656	.	-	0	transcript_id "Ledus.S1G201600.t2"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	transcript	17985294	17989656	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	stop_codon	17985291	17985293	.	-	0	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17985294	17985387	1	-	1	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17985294	17985387	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17985388	17985658	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17985659	17985768	1	-	0	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17985659	17985768	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17985769	17986574	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17986575	17986745	1	-	0	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17986575	17986745	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17986746	17986909	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17986910	17987006	1	-	1	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17986910	17987006	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17987007	17987088	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17987089	17987219	1	-	0	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17987089	17987219	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17987220	17987329	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17987330	17987436	0.99	-	2	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17987330	17987436	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17987437	17988514	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17988515	17988995	0.99	-	0	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17988515	17988995	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17988996	17989458	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17989459	17989656	0.68	-	0	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17989459	17989656	.	-	.	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	start_codon	17989654	17989656	.	-	0	transcript_id "Ledus.S1G201600.t3"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	transcript	17985294	17989656	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	stop_codon	17985291	17985293	.	-	0	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17985294	17985387	1	-	1	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17985294	17985387	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17985388	17985658	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17985659	17985768	1	-	0	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17985659	17985768	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17985769	17986574	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17986575	17986745	0.99	-	0	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17986575	17986745	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17986746	17986909	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17986910	17987006	1	-	1	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17986910	17987006	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17987007	17987088	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17987089	17987219	1	-	0	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17987089	17987219	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17987220	17987329	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17987330	17987436	1	-	2	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17987330	17987436	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17987437	17988541	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17988542	17988995	0.99	-	0	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17988542	17988995	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	intron	17988996	17989416	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	CDS	17989417	17989656	0.39	-	0	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	exon	17989417	17989656	.	-	.	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
Ledus.S1	AUGUSTUS	start_codon	17989654	17989656	.	-	0	transcript_id "Ledus.S1G201600.t4"; gene_id "Ledus.S1G201600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8993.t1 is derived from g10023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3739288	3740481	.	-	.	Ledus.S3G047000
Ledus.S3	AUGUSTUS	transcript	3739288	3740481	.	-	.	transcript_id "Ledus.S3G047000.t1"; gene_id "Ledus.S3G047000"
Ledus.S3	AUGUSTUS	stop_codon	3739285	3739287	.	-	0	transcript_id "Ledus.S3G047000.t1"; gene_id "Ledus.S3G047000"
Ledus.S3	AUGUSTUS	CDS	3739288	3740481	1	-	0	transcript_id "Ledus.S3G047000.t1"; gene_id "Ledus.S3G047000"
Ledus.S3	AUGUSTUS	exon	3739288	3740481	.	-	.	transcript_id "Ledus.S3G047000.t1"; gene_id "Ledus.S3G047000"
Ledus.S3	AUGUSTUS	start_codon	3740479	3740481	.	-	0	transcript_id "Ledus.S3G047000.t1"; gene_id "Ledus.S3G047000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4900.t1 is derived from g2338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20570903	20571454	.	-	.	Ledus.S1G232100
Ledus.S1	AUGUSTUS	transcript	20570903	20571454	.	-	.	transcript_id "Ledus.S1G232100.t1"; gene_id "Ledus.S1G232100"
Ledus.S1	AUGUSTUS	stop_codon	20570900	20570902	.	-	0	transcript_id "Ledus.S1G232100.t1"; gene_id "Ledus.S1G232100"
Ledus.S1	AUGUSTUS	CDS	20570903	20571454	0.88	-	0	transcript_id "Ledus.S1G232100.t1"; gene_id "Ledus.S1G232100"
Ledus.S1	AUGUSTUS	exon	20570903	20571454	.	-	.	transcript_id "Ledus.S1G232100.t1"; gene_id "Ledus.S1G232100"
Ledus.S1	AUGUSTUS	start_codon	20571452	20571454	.	-	0	transcript_id "Ledus.S1G232100.t1"; gene_id "Ledus.S1G232100"
# This transcript jg10505.t2 is derived from g11535.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10506.t1 is derived from g11536.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15652616	15657291	.	-	.	Ledus.S3G198300
Ledus.S3	AUGUSTUS	transcript	15652616	15657291	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	stop_codon	15652613	15652615	.	-	0	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15652616	15652631	1	-	1	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15652616	15652631	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15652632	15652710	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15652711	15653346	1	-	1	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15652711	15653346	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15653347	15653497	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15653498	15653667	1	-	0	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15653498	15653667	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15653668	15653776	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15653777	15654000	1	-	2	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15653777	15654000	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15654001	15654237	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15654238	15654436	1	-	0	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15654238	15654436	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15654437	15654572	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15654573	15654758	1	-	0	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15654573	15654758	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15654759	15654845	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15654846	15654943	0.53	-	2	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15654846	15654943	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15654944	15655128	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15655129	15655204	0.57	-	0	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15655129	15655204	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15655205	15655311	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15655312	15657291	0.46	-	0	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15655312	15657291	.	-	.	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	start_codon	15657289	15657291	.	-	0	transcript_id "Ledus.S3G198300.t1"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	transcript	15652616	15657291	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	stop_codon	15652613	15652615	.	-	0	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15652616	15652631	1	-	1	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15652616	15652631	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15652632	15652710	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15652711	15653346	1	-	1	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15652711	15653346	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15653347	15653497	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15653498	15653667	1	-	0	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15653498	15653667	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15653668	15653776	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15653777	15654003	0.99	-	2	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15653777	15654003	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15654004	15654237	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15654238	15654436	1	-	0	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15654238	15654436	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15654437	15654572	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15654573	15654758	1	-	0	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15654573	15654758	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15654759	15654845	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15654846	15654943	0.46	-	2	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15654846	15654943	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15654944	15655128	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15655129	15655204	0.54	-	0	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15655129	15655204	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	intron	15655205	15655311	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	CDS	15655312	15657291	0.47	-	0	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	exon	15655312	15657291	.	-	.	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
Ledus.S3	AUGUSTUS	start_codon	15657289	15657291	.	-	0	transcript_id "Ledus.S3G198300.t2"; gene_id "Ledus.S3G198300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8972.t1 is derived from g10002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3620395	3625122	.	-	.	Ledus.S3G044900
Ledus.S3	AUGUSTUS	transcript	3620395	3625122	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	stop_codon	3620392	3620394	.	-	0	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3620395	3620578	0.66	-	1	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3620395	3620578	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3620579	3620659	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3620660	3620778	1	-	0	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3620660	3620778	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3620779	3621334	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3621335	3621622	1	-	0	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3621335	3621622	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3621623	3621708	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3621709	3622135	1	-	1	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3621709	3622135	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3622136	3622249	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3622250	3622630	1	-	1	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3622250	3622630	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3622631	3622765	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3622766	3622842	1	-	0	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3622766	3622842	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3622843	3622932	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3622933	3623091	1	-	0	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3622933	3623091	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3623092	3623192	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3623193	3623386	0.92	-	2	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3623193	3623386	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3623387	3623492	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3623493	3623631	1	-	0	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3623493	3623631	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3623632	3623737	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3623738	3623878	0.98	-	0	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3623738	3623878	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3623879	3623986	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3623987	3624458	0.99	-	1	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3623987	3624458	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3624459	3624569	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3624570	3624775	1	-	0	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3624570	3624775	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3624776	3624864	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3624865	3624936	1	-	0	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3624865	3624936	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	intron	3624937	3625020	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	CDS	3625021	3625122	0.99	-	0	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	exon	3625021	3625122	.	-	.	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
Ledus.S3	AUGUSTUS	start_codon	3625120	3625122	.	-	0	transcript_id "Ledus.S3G044900.t1"; gene_id "Ledus.S3G044900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9598.t1 is derived from g10628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8283684	8284511	.	+	.	Ledus.S3G107500
Ledus.S3	AUGUSTUS	transcript	8283684	8284511	.	+	.	transcript_id "Ledus.S3G107500.t1"; gene_id "Ledus.S3G107500"
Ledus.S3	AUGUSTUS	start_codon	8283684	8283686	.	+	0	transcript_id "Ledus.S3G107500.t1"; gene_id "Ledus.S3G107500"
Ledus.S3	AUGUSTUS	CDS	8283684	8283906	0.43	+	0	transcript_id "Ledus.S3G107500.t1"; gene_id "Ledus.S3G107500"
Ledus.S3	AUGUSTUS	exon	8283684	8283906	.	+	.	transcript_id "Ledus.S3G107500.t1"; gene_id "Ledus.S3G107500"
Ledus.S3	AUGUSTUS	intron	8283907	8284260	.	+	.	transcript_id "Ledus.S3G107500.t1"; gene_id "Ledus.S3G107500"
Ledus.S3	AUGUSTUS	CDS	8284261	8284511	0.35	+	2	transcript_id "Ledus.S3G107500.t1"; gene_id "Ledus.S3G107500"
Ledus.S3	AUGUSTUS	exon	8284261	8284511	.	+	.	transcript_id "Ledus.S3G107500.t1"; gene_id "Ledus.S3G107500"
Ledus.S3	AUGUSTUS	stop_codon	8284512	8284514	.	+	0	transcript_id "Ledus.S3G107500.t1"; gene_id "Ledus.S3G107500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7636.t1 is derived from g12307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4702142	4705095	.	-	.	Ledus.S5G041400
Ledus.S5	AUGUSTUS	transcript	4702142	4705095	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	stop_codon	4702139	4702141	.	-	0	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	CDS	4702142	4702189	0.34	-	0	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	exon	4702142	4702189	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	intron	4702190	4702344	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	CDS	4702345	4702524	0.94	-	0	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	exon	4702345	4702524	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	intron	4702525	4702767	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	CDS	4702768	4702884	1	-	0	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	exon	4702768	4702884	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	intron	4702885	4703051	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	CDS	4703052	4703225	0.94	-	0	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	exon	4703052	4703225	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	intron	4703226	4703316	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	CDS	4703317	4704098	0.8	-	2	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	exon	4703317	4704098	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	intron	4704099	4704248	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	CDS	4704249	4704816	0.94	-	0	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	exon	4704249	4704816	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	intron	4704817	4705056	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	CDS	4705057	4705095	0.57	-	0	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	exon	4705057	4705095	.	-	.	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
Ledus.S5	AUGUSTUS	start_codon	4705093	4705095	.	-	0	transcript_id "Ledus.S5G041400.t1"; gene_id "Ledus.S5G041400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4815.t1 is derived from g2253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19933601	19933864	.	+	.	Ledus.S1G223600
Ledus.S1	AUGUSTUS	transcript	19933601	19933864	.	+	.	transcript_id "Ledus.S1G223600.t1"; gene_id "Ledus.S1G223600"
Ledus.S1	AUGUSTUS	start_codon	19933601	19933603	.	+	0	transcript_id "Ledus.S1G223600.t1"; gene_id "Ledus.S1G223600"
Ledus.S1	AUGUSTUS	CDS	19933601	19933864	0.78	+	0	transcript_id "Ledus.S1G223600.t1"; gene_id "Ledus.S1G223600"
Ledus.S1	AUGUSTUS	exon	19933601	19933864	.	+	.	transcript_id "Ledus.S1G223600.t1"; gene_id "Ledus.S1G223600"
Ledus.S1	AUGUSTUS	stop_codon	19933865	19933867	.	+	0	transcript_id "Ledus.S1G223600.t1"; gene_id "Ledus.S1G223600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7319.t1 is derived from g11990.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1152190	1155542	.	+	.	Ledus.S5G009700
Ledus.S5	AUGUSTUS	transcript	1152190	1155542	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	start_codon	1152190	1152192	.	+	0	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	CDS	1152190	1152420	0.9	+	0	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	exon	1152190	1152420	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	intron	1152421	1152633	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	CDS	1152634	1152648	0.97	+	0	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	exon	1152634	1152648	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	intron	1152649	1152834	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	CDS	1152835	1152969	1	+	0	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	exon	1152835	1152969	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	intron	1152970	1153061	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	CDS	1153062	1153206	1	+	0	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	exon	1153062	1153206	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	intron	1153207	1153296	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	CDS	1153297	1153385	1	+	2	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	exon	1153297	1153385	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	intron	1153386	1153586	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	CDS	1153587	1153646	1	+	0	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	exon	1153587	1153646	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	intron	1153647	1153768	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	CDS	1153769	1153972	1	+	0	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	exon	1153769	1153972	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	intron	1153973	1154161	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	CDS	1154162	1154290	1	+	0	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	exon	1154162	1154290	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	intron	1154291	1154406	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	CDS	1154407	1155114	0.96	+	0	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	exon	1154407	1155114	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	intron	1155115	1155242	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	CDS	1155243	1155435	1	+	0	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	exon	1155243	1155435	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	intron	1155436	1155516	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	CDS	1155517	1155542	0.98	+	2	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	exon	1155517	1155542	.	+	.	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
Ledus.S5	AUGUSTUS	stop_codon	1155543	1155545	.	+	0	transcript_id "Ledus.S5G009700.t1"; gene_id "Ledus.S5G009700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8011.t1 is derived from g12682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8475081	8475881	.	+	.	Ledus.S5G078900
Ledus.S5	AUGUSTUS	transcript	8475081	8475881	.	+	.	transcript_id "Ledus.S5G078900.t1"; gene_id "Ledus.S5G078900"
Ledus.S5	AUGUSTUS	start_codon	8475081	8475083	.	+	0	transcript_id "Ledus.S5G078900.t1"; gene_id "Ledus.S5G078900"
Ledus.S5	AUGUSTUS	CDS	8475081	8475240	1	+	0	transcript_id "Ledus.S5G078900.t1"; gene_id "Ledus.S5G078900"
Ledus.S5	AUGUSTUS	exon	8475081	8475240	.	+	.	transcript_id "Ledus.S5G078900.t1"; gene_id "Ledus.S5G078900"
Ledus.S5	AUGUSTUS	intron	8475241	8475327	.	+	.	transcript_id "Ledus.S5G078900.t1"; gene_id "Ledus.S5G078900"
Ledus.S5	AUGUSTUS	CDS	8475328	8475390	0.91	+	2	transcript_id "Ledus.S5G078900.t1"; gene_id "Ledus.S5G078900"
Ledus.S5	AUGUSTUS	exon	8475328	8475390	.	+	.	transcript_id "Ledus.S5G078900.t1"; gene_id "Ledus.S5G078900"
Ledus.S5	AUGUSTUS	intron	8475391	8475465	.	+	.	transcript_id "Ledus.S5G078900.t1"; gene_id "Ledus.S5G078900"
Ledus.S5	AUGUSTUS	CDS	8475466	8475881	0.91	+	2	transcript_id "Ledus.S5G078900.t1"; gene_id "Ledus.S5G078900"
Ledus.S5	AUGUSTUS	exon	8475466	8475881	.	+	.	transcript_id "Ledus.S5G078900.t1"; gene_id "Ledus.S5G078900"
Ledus.S5	AUGUSTUS	stop_codon	8475882	8475884	.	+	0	transcript_id "Ledus.S5G078900.t1"; gene_id "Ledus.S5G078900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13175.t1 is derived from g4384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C21	AUGUSTUS	gene	50066	50719	.	-	.	Ledus.C21G000100
Ledus.C21	AUGUSTUS	transcript	50066	50719	.	-	.	transcript_id "Ledus.C21G000100.t1"; gene_id "Ledus.C21G000100"
Ledus.C21	AUGUSTUS	stop_codon	50063	50065	.	-	0	transcript_id "Ledus.C21G000100.t1"; gene_id "Ledus.C21G000100"
Ledus.C21	AUGUSTUS	CDS	50066	50719	0.92	-	0	transcript_id "Ledus.C21G000100.t1"; gene_id "Ledus.C21G000100"
Ledus.C21	AUGUSTUS	exon	50066	50719	.	-	.	transcript_id "Ledus.C21G000100.t1"; gene_id "Ledus.C21G000100"
Ledus.C21	AUGUSTUS	start_codon	50717	50719	.	-	0	transcript_id "Ledus.C21G000100.t1"; gene_id "Ledus.C21G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4626.t1 is derived from g2063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18341242	18341445	.	+	.	Ledus.S1G204700
Ledus.S1	AUGUSTUS	transcript	18341242	18341445	.	+	.	transcript_id "Ledus.S1G204700.t1"; gene_id "Ledus.S1G204700"
Ledus.S1	AUGUSTUS	start_codon	18341242	18341244	.	+	0	transcript_id "Ledus.S1G204700.t1"; gene_id "Ledus.S1G204700"
Ledus.S1	AUGUSTUS	CDS	18341242	18341445	0.4	+	0	transcript_id "Ledus.S1G204700.t1"; gene_id "Ledus.S1G204700"
Ledus.S1	AUGUSTUS	exon	18341242	18341445	.	+	.	transcript_id "Ledus.S1G204700.t1"; gene_id "Ledus.S1G204700"
Ledus.S1	AUGUSTUS	stop_codon	18341446	18341448	.	+	0	transcript_id "Ledus.S1G204700.t1"; gene_id "Ledus.S1G204700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6596.t1 is derived from g4039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32577933	32581314	.	-	.	Ledus.S1G401700
Ledus.S1	AUGUSTUS	transcript	32577933	32581314	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	stop_codon	32577930	32577932	.	-	0	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32577933	32578058	0.89	-	0	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32577933	32578058	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	intron	32578059	32578166	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32578167	32578251	0.91	-	1	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32578167	32578251	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	intron	32578252	32578342	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32578343	32578458	1	-	0	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32578343	32578458	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	intron	32578459	32578554	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32578555	32578647	1	-	0	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32578555	32578647	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	intron	32578648	32578735	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32578736	32578801	0.99	-	0	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32578736	32578801	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	intron	32578802	32578912	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32578913	32578978	0.99	-	0	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32578913	32578978	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	intron	32578979	32579087	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32579088	32579193	1	-	1	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32579088	32579193	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	intron	32579194	32579327	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32579328	32579389	1	-	0	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32579328	32579389	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	intron	32579390	32579535	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32579536	32579670	1	-	0	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32579536	32579670	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	intron	32579671	32579750	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32579751	32579855	1	-	0	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32579751	32579855	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	intron	32579856	32579939	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32579940	32580383	0.77	-	0	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32579940	32580383	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	intron	32580384	32580447	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32580448	32580499	0.45	-	1	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32580448	32580499	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	intron	32580500	32581231	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	CDS	32581232	32581314	0.6	-	0	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	exon	32581232	32581314	.	-	.	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
Ledus.S1	AUGUSTUS	start_codon	32581312	32581314	.	-	0	transcript_id "Ledus.S1G401700.t1"; gene_id "Ledus.S1G401700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2673.t1 is derived from g106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1585956	1588248	.	-	.	Ledus.S1G009400
Ledus.S1	AUGUSTUS	transcript	1585956	1588248	.	-	.	transcript_id "Ledus.S1G009400.t1"; gene_id "Ledus.S1G009400"
Ledus.S1	AUGUSTUS	stop_codon	1585953	1585955	.	-	0	transcript_id "Ledus.S1G009400.t1"; gene_id "Ledus.S1G009400"
Ledus.S1	AUGUSTUS	CDS	1585956	1585997	0.59	-	0	transcript_id "Ledus.S1G009400.t1"; gene_id "Ledus.S1G009400"
Ledus.S1	AUGUSTUS	exon	1585956	1585997	.	-	.	transcript_id "Ledus.S1G009400.t1"; gene_id "Ledus.S1G009400"
Ledus.S1	AUGUSTUS	intron	1585998	1586089	.	-	.	transcript_id "Ledus.S1G009400.t1"; gene_id "Ledus.S1G009400"
Ledus.S1	AUGUSTUS	CDS	1586090	1587870	0.79	-	2	transcript_id "Ledus.S1G009400.t1"; gene_id "Ledus.S1G009400"
Ledus.S1	AUGUSTUS	exon	1586090	1587870	.	-	.	transcript_id "Ledus.S1G009400.t1"; gene_id "Ledus.S1G009400"
Ledus.S1	AUGUSTUS	intron	1587871	1588097	.	-	.	transcript_id "Ledus.S1G009400.t1"; gene_id "Ledus.S1G009400"
Ledus.S1	AUGUSTUS	CDS	1588098	1588248	0.85	-	0	transcript_id "Ledus.S1G009400.t1"; gene_id "Ledus.S1G009400"
Ledus.S1	AUGUSTUS	exon	1588098	1588248	.	-	.	transcript_id "Ledus.S1G009400.t1"; gene_id "Ledus.S1G009400"
Ledus.S1	AUGUSTUS	start_codon	1588246	1588248	.	-	0	transcript_id "Ledus.S1G009400.t1"; gene_id "Ledus.S1G009400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7744.t1 is derived from g12415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5976408	5977070	.	+	.	Ledus.S5G052200
Ledus.S5	AUGUSTUS	transcript	5976408	5977070	.	+	.	transcript_id "Ledus.S5G052200.t1"; gene_id "Ledus.S5G052200"
Ledus.S5	AUGUSTUS	start_codon	5976408	5976410	.	+	0	transcript_id "Ledus.S5G052200.t1"; gene_id "Ledus.S5G052200"
Ledus.S5	AUGUSTUS	CDS	5976408	5976570	0.99	+	0	transcript_id "Ledus.S5G052200.t1"; gene_id "Ledus.S5G052200"
Ledus.S5	AUGUSTUS	exon	5976408	5976570	.	+	.	transcript_id "Ledus.S5G052200.t1"; gene_id "Ledus.S5G052200"
Ledus.S5	AUGUSTUS	intron	5976571	5976780	.	+	.	transcript_id "Ledus.S5G052200.t1"; gene_id "Ledus.S5G052200"
Ledus.S5	AUGUSTUS	CDS	5976781	5977070	1	+	2	transcript_id "Ledus.S5G052200.t1"; gene_id "Ledus.S5G052200"
Ledus.S5	AUGUSTUS	exon	5976781	5977070	.	+	.	transcript_id "Ledus.S5G052200.t1"; gene_id "Ledus.S5G052200"
Ledus.S5	AUGUSTUS	stop_codon	5977071	5977073	.	+	0	transcript_id "Ledus.S5G052200.t1"; gene_id "Ledus.S5G052200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4600.t1 is derived from g2037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18029628	18030800	.	-	.	Ledus.S1G202100
Ledus.S1	AUGUSTUS	transcript	18029628	18030800	.	-	.	transcript_id "Ledus.S1G202100.t1"; gene_id "Ledus.S1G202100"
Ledus.S1	AUGUSTUS	stop_codon	18029625	18029627	.	-	0	transcript_id "Ledus.S1G202100.t1"; gene_id "Ledus.S1G202100"
Ledus.S1	AUGUSTUS	CDS	18029628	18030800	0.96	-	0	transcript_id "Ledus.S1G202100.t1"; gene_id "Ledus.S1G202100"
Ledus.S1	AUGUSTUS	exon	18029628	18030800	.	-	.	transcript_id "Ledus.S1G202100.t1"; gene_id "Ledus.S1G202100"
Ledus.S1	AUGUSTUS	start_codon	18030798	18030800	.	-	0	transcript_id "Ledus.S1G202100.t1"; gene_id "Ledus.S1G202100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5469.t1 is derived from g2908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24457396	24460169	.	-	.	Ledus.S1G289000
Ledus.S1	AUGUSTUS	transcript	24457396	24460169	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	stop_codon	24457393	24457395	.	-	0	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	CDS	24457396	24457647	0.99	-	0	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	exon	24457396	24457647	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	intron	24457648	24457734	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	CDS	24457735	24457872	1	-	0	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	exon	24457735	24457872	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	intron	24457873	24457946	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	CDS	24457947	24458211	1	-	1	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	exon	24457947	24458211	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	intron	24458212	24458373	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	CDS	24458374	24458609	1	-	0	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	exon	24458374	24458609	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	intron	24458610	24458756	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	CDS	24458757	24459275	0.99	-	0	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	exon	24458757	24459275	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	intron	24459276	24459480	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	CDS	24459481	24459893	1	-	2	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	exon	24459481	24459893	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	intron	24459894	24459988	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	CDS	24459989	24460169	0.39	-	0	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	exon	24459989	24460169	.	-	.	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
Ledus.S1	AUGUSTUS	start_codon	24460167	24460169	.	-	0	transcript_id "Ledus.S1G289000.t1"; gene_id "Ledus.S1G289000"
# This transcript jg7317.t2 is derived from g11988.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7317.t3 is derived from g11988.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7317.t4 is derived from g11988.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7318.t1 is derived from g11989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1151267	1152041	.	-	.	Ledus.S5G009600
Ledus.S5	AUGUSTUS	transcript	1151267	1152041	.	-	.	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	stop_codon	1151264	1151266	.	-	0	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	CDS	1151267	1151348	1	-	1	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	exon	1151267	1151348	.	-	.	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	intron	1151349	1151446	.	-	.	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	CDS	1151447	1151561	1	-	2	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	exon	1151447	1151561	.	-	.	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	intron	1151562	1151636	.	-	.	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	CDS	1151637	1151746	1	-	1	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	exon	1151637	1151746	.	-	.	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	intron	1151747	1151829	.	-	.	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	CDS	1151830	1151899	1	-	2	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	exon	1151830	1151899	.	-	.	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	intron	1151900	1151974	.	-	.	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	CDS	1151975	1152041	1	-	0	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	exon	1151975	1152041	.	-	.	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
Ledus.S5	AUGUSTUS	start_codon	1152039	1152041	.	-	0	transcript_id "Ledus.S5G009600.t1"; gene_id "Ledus.S5G009600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2694.t1 is derived from g127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1995019	1996959	.	-	.	Ledus.S1G011500
Ledus.S1	AUGUSTUS	transcript	1995019	1996959	.	-	.	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	stop_codon	1995016	1995018	.	-	0	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	CDS	1995019	1995076	1	-	1	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	exon	1995019	1995076	.	-	.	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	intron	1995077	1995905	.	-	.	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	CDS	1995906	1996004	0.92	-	1	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	exon	1995906	1996004	.	-	.	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	intron	1996005	1996238	.	-	.	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	CDS	1996239	1996451	0.2	-	1	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	exon	1996239	1996451	.	-	.	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	intron	1996452	1996540	.	-	.	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	CDS	1996541	1996959	0.57	-	0	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	exon	1996541	1996959	.	-	.	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
Ledus.S1	AUGUSTUS	start_codon	1996957	1996959	.	-	0	transcript_id "Ledus.S1G011500.t1"; gene_id "Ledus.S1G011500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9113.t1 is derived from g10143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4664564	4665860	.	+	.	Ledus.S3G059000
Ledus.S3	AUGUSTUS	transcript	4664564	4665860	.	+	.	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	start_codon	4664564	4664566	.	+	0	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	CDS	4664564	4664781	0.63	+	0	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	exon	4664564	4664781	.	+	.	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	intron	4664782	4664845	.	+	.	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	CDS	4664846	4665042	0.67	+	1	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	exon	4664846	4665042	.	+	.	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	intron	4665043	4665408	.	+	.	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	CDS	4665409	4665567	1	+	2	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	exon	4665409	4665567	.	+	.	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	intron	4665568	4665843	.	+	.	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	CDS	4665844	4665860	1	+	2	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	exon	4665844	4665860	.	+	.	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
Ledus.S3	AUGUSTUS	stop_codon	4665861	4665863	.	+	0	transcript_id "Ledus.S3G059000.t1"; gene_id "Ledus.S3G059000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12564.t1 is derived from g6186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12886045	12886852	.	+	.	Ledus.S4G172000
Ledus.S4	AUGUSTUS	transcript	12886045	12886852	.	+	.	transcript_id "Ledus.S4G172000.t1"; gene_id "Ledus.S4G172000"
Ledus.S4	AUGUSTUS	start_codon	12886045	12886047	.	+	0	transcript_id "Ledus.S4G172000.t1"; gene_id "Ledus.S4G172000"
Ledus.S4	AUGUSTUS	CDS	12886045	12886374	0.5	+	0	transcript_id "Ledus.S4G172000.t1"; gene_id "Ledus.S4G172000"
Ledus.S4	AUGUSTUS	exon	12886045	12886374	.	+	.	transcript_id "Ledus.S4G172000.t1"; gene_id "Ledus.S4G172000"
Ledus.S4	AUGUSTUS	intron	12886375	12886441	.	+	.	transcript_id "Ledus.S4G172000.t1"; gene_id "Ledus.S4G172000"
Ledus.S4	AUGUSTUS	CDS	12886442	12886537	1	+	0	transcript_id "Ledus.S4G172000.t1"; gene_id "Ledus.S4G172000"
Ledus.S4	AUGUSTUS	exon	12886442	12886537	.	+	.	transcript_id "Ledus.S4G172000.t1"; gene_id "Ledus.S4G172000"
Ledus.S4	AUGUSTUS	intron	12886538	12886618	.	+	.	transcript_id "Ledus.S4G172000.t1"; gene_id "Ledus.S4G172000"
Ledus.S4	AUGUSTUS	CDS	12886619	12886852	1	+	0	transcript_id "Ledus.S4G172000.t1"; gene_id "Ledus.S4G172000"
Ledus.S4	AUGUSTUS	exon	12886619	12886852	.	+	.	transcript_id "Ledus.S4G172000.t1"; gene_id "Ledus.S4G172000"
Ledus.S4	AUGUSTUS	stop_codon	12886853	12886855	.	+	0	transcript_id "Ledus.S4G172000.t1"; gene_id "Ledus.S4G172000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10653.t1 is derived from g11683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16874168	16876505	.	+	.	Ledus.S3G213000
Ledus.S3	AUGUSTUS	transcript	16874168	16876505	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	start_codon	16874168	16874170	.	+	0	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	CDS	16874168	16874872	0.72	+	0	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	exon	16874168	16874872	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	intron	16874873	16874965	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	CDS	16874966	16875175	0.99	+	0	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	exon	16874966	16875175	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	intron	16875176	16875259	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	CDS	16875260	16875400	1	+	0	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	exon	16875260	16875400	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	intron	16875401	16875485	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	CDS	16875486	16875689	1	+	0	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	exon	16875486	16875689	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	intron	16875690	16875774	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	CDS	16875775	16875891	0.81	+	0	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	exon	16875775	16875891	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	intron	16875892	16876074	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	CDS	16876075	16876143	0.95	+	0	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	exon	16876075	16876143	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	intron	16876144	16876228	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	CDS	16876229	16876345	1	+	0	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	exon	16876229	16876345	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	intron	16876346	16876433	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	CDS	16876434	16876505	0.96	+	0	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	exon	16876434	16876505	.	+	.	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
Ledus.S3	AUGUSTUS	stop_codon	16876506	16876508	.	+	0	transcript_id "Ledus.S3G213000.t1"; gene_id "Ledus.S3G213000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4881.t1 is derived from g2319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20507978	20508364	.	-	.	Ledus.S1G230200
Ledus.S1	AUGUSTUS	transcript	20507978	20508364	.	-	.	transcript_id "Ledus.S1G230200.t1"; gene_id "Ledus.S1G230200"
Ledus.S1	AUGUSTUS	stop_codon	20507975	20507977	.	-	0	transcript_id "Ledus.S1G230200.t1"; gene_id "Ledus.S1G230200"
Ledus.S1	AUGUSTUS	CDS	20507978	20508364	1	-	0	transcript_id "Ledus.S1G230200.t1"; gene_id "Ledus.S1G230200"
Ledus.S1	AUGUSTUS	exon	20507978	20508364	.	-	.	transcript_id "Ledus.S1G230200.t1"; gene_id "Ledus.S1G230200"
Ledus.S1	AUGUSTUS	start_codon	20508362	20508364	.	-	0	transcript_id "Ledus.S1G230200.t1"; gene_id "Ledus.S1G230200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10059.t1 is derived from g11089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12317598	12320901	.	-	.	Ledus.S3G153600
Ledus.S3	AUGUSTUS	transcript	12317598	12320901	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	stop_codon	12317595	12317597	.	-	0	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	CDS	12317598	12317771	0.93	-	0	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	exon	12317598	12317771	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	intron	12317772	12317998	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	CDS	12317999	12318084	0.94	-	2	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	exon	12317999	12318084	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	intron	12318085	12318326	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	CDS	12318327	12318480	0.29	-	0	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	exon	12318327	12318480	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	intron	12318481	12318576	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	CDS	12318577	12318680	0.26	-	2	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	exon	12318577	12318680	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	intron	12318681	12319004	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	CDS	12319005	12319094	0.91	-	2	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	exon	12319005	12319094	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	intron	12319095	12319270	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	CDS	12319271	12319358	0.53	-	0	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	exon	12319271	12319358	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	intron	12319359	12319467	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	CDS	12319468	12319619	0.64	-	2	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	exon	12319468	12319619	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	intron	12319620	12319863	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	CDS	12319864	12319975	1	-	0	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	exon	12319864	12319975	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	intron	12319976	12320113	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	CDS	12320114	12320185	1	-	0	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	exon	12320114	12320185	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	intron	12320186	12320274	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	CDS	12320275	12320368	1	-	1	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	exon	12320275	12320368	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	intron	12320369	12320535	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	CDS	12320536	12320687	1	-	0	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	exon	12320536	12320687	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	intron	12320688	12320832	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	CDS	12320833	12320901	1	-	0	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	exon	12320833	12320901	.	-	.	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
Ledus.S3	AUGUSTUS	start_codon	12320899	12320901	.	-	0	transcript_id "Ledus.S3G153600.t1"; gene_id "Ledus.S3G153600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10766.t1 is derived from g11798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17540704	17545507	.	-	.	Ledus.S3G224300
Ledus.S3	AUGUSTUS	transcript	17540704	17545507	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	stop_codon	17540701	17540703	.	-	0	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	CDS	17540704	17540895	0.51	-	0	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	exon	17540704	17540895	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	intron	17540896	17541030	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	CDS	17541031	17541105	1	-	0	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	exon	17541031	17541105	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	intron	17541106	17541951	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	CDS	17541952	17542115	1	-	2	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	exon	17541952	17542115	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	intron	17542116	17542297	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	CDS	17542298	17542412	1	-	0	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	exon	17542298	17542412	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	intron	17542413	17542579	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	CDS	17542580	17542871	0.89	-	1	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	exon	17542580	17542871	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	intron	17542872	17542964	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	CDS	17542965	17543121	1	-	2	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	exon	17542965	17543121	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	intron	17543122	17543249	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	CDS	17543250	17543322	1	-	0	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	exon	17543250	17543322	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	intron	17543323	17543465	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	CDS	17543466	17543534	1	-	0	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	exon	17543466	17543534	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	intron	17543535	17543651	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	CDS	17543652	17543872	0.98	-	2	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	exon	17543652	17543872	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	intron	17543873	17544039	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	CDS	17544040	17544227	1	-	1	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	exon	17544040	17544227	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	intron	17544228	17544317	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	CDS	17544318	17545507	0.92	-	0	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	exon	17544318	17545507	.	-	.	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
Ledus.S3	AUGUSTUS	start_codon	17545505	17545507	.	-	0	transcript_id "Ledus.S3G224300.t1"; gene_id "Ledus.S3G224300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2029.t1 is derived from g8892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14254100	14255258	.	-	.	Ledus.S2G191100
Ledus.S2	AUGUSTUS	transcript	14254100	14255258	.	-	.	transcript_id "Ledus.S2G191100.t1"; gene_id "Ledus.S2G191100"
Ledus.S2	AUGUSTUS	stop_codon	14254097	14254099	.	-	0	transcript_id "Ledus.S2G191100.t1"; gene_id "Ledus.S2G191100"
Ledus.S2	AUGUSTUS	CDS	14254100	14255062	0.7	-	0	transcript_id "Ledus.S2G191100.t1"; gene_id "Ledus.S2G191100"
Ledus.S2	AUGUSTUS	exon	14254100	14255062	.	-	.	transcript_id "Ledus.S2G191100.t1"; gene_id "Ledus.S2G191100"
Ledus.S2	AUGUSTUS	intron	14255063	14255165	.	-	.	transcript_id "Ledus.S2G191100.t1"; gene_id "Ledus.S2G191100"
Ledus.S2	AUGUSTUS	CDS	14255166	14255258	0.7	-	0	transcript_id "Ledus.S2G191100.t1"; gene_id "Ledus.S2G191100"
Ledus.S2	AUGUSTUS	exon	14255166	14255258	.	-	.	transcript_id "Ledus.S2G191100.t1"; gene_id "Ledus.S2G191100"
Ledus.S2	AUGUSTUS	start_codon	14255256	14255258	.	-	0	transcript_id "Ledus.S2G191100.t1"; gene_id "Ledus.S2G191100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9266.t1 is derived from g10296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5670010	5670369	.	-	.	Ledus.S3G074300
Ledus.S3	AUGUSTUS	transcript	5670010	5670369	.	-	.	transcript_id "Ledus.S3G074300.t1"; gene_id "Ledus.S3G074300"
Ledus.S3	AUGUSTUS	stop_codon	5670007	5670009	.	-	0	transcript_id "Ledus.S3G074300.t1"; gene_id "Ledus.S3G074300"
Ledus.S3	AUGUSTUS	CDS	5670010	5670369	0.98	-	0	transcript_id "Ledus.S3G074300.t1"; gene_id "Ledus.S3G074300"
Ledus.S3	AUGUSTUS	exon	5670010	5670369	.	-	.	transcript_id "Ledus.S3G074300.t1"; gene_id "Ledus.S3G074300"
Ledus.S3	AUGUSTUS	start_codon	5670367	5670369	.	-	0	transcript_id "Ledus.S3G074300.t1"; gene_id "Ledus.S3G074300"
# This transcript jg11597.t2 is derived from g5215.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11598.t1 is derived from g5216.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5451322	5456503	.	+	.	Ledus.S4G075400
Ledus.S4	AUGUSTUS	transcript	5451322	5456503	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	start_codon	5451322	5451324	.	+	0	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5451322	5451355	0.99	+	0	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5451322	5451355	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5451356	5451637	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5451638	5451738	0.94	+	2	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5451638	5451738	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5451739	5451964	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5451965	5452136	1	+	0	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5451965	5452136	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5452137	5452254	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5452255	5452367	0.98	+	2	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5452255	5452367	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5452368	5452477	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5452478	5452814	0.98	+	0	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5452478	5452814	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5452815	5452926	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5452927	5453021	0.99	+	2	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5452927	5453021	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5453022	5453102	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5453103	5453236	1	+	0	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5453103	5453236	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5453237	5453365	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5453366	5453422	0.98	+	1	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5453366	5453422	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5453423	5453527	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5453528	5453605	1	+	1	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5453528	5453605	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5453606	5453712	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5453713	5453779	1	+	1	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5453713	5453779	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5453780	5453864	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5453865	5453909	1	+	0	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5453865	5453909	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5453910	5453994	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5453995	5454075	1	+	0	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5453995	5454075	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5454076	5454209	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5454210	5454411	1	+	0	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5454210	5454411	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5454412	5454491	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5454492	5454549	1	+	2	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5454492	5454549	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5454550	5454767	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5454768	5454890	1	+	1	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5454768	5454890	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5454891	5454992	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5454993	5455081	1	+	1	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5454993	5455081	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5455082	5455314	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5455315	5455407	1	+	2	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5455315	5455407	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5455408	5455539	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5455540	5455704	1	+	2	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5455540	5455704	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5455705	5455834	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5455835	5455968	0.9	+	2	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5455835	5455968	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5455969	5456070	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5456071	5456200	0.93	+	0	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5456071	5456200	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5456201	5456318	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5456319	5456503	1	+	2	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5456319	5456503	.	+	.	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	stop_codon	5456504	5456506	.	+	0	transcript_id "Ledus.S4G075400.t1"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	transcript	5451322	5456503	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	start_codon	5451322	5451324	.	+	0	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5451322	5451355	0.91	+	0	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5451322	5451355	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5451356	5451640	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5451641	5451738	0.91	+	2	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5451641	5451738	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5451739	5451964	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5451965	5452136	1	+	0	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5451965	5452136	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5452137	5452254	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5452255	5452367	0.97	+	2	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5452255	5452367	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5452368	5452477	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5452478	5452814	0.96	+	0	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5452478	5452814	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5452815	5452926	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5452927	5453021	0.99	+	2	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5452927	5453021	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5453022	5453102	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5453103	5453236	1	+	0	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5453103	5453236	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5453237	5453365	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5453366	5453422	0.98	+	1	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5453366	5453422	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5453423	5453527	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5453528	5453605	0.98	+	1	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5453528	5453605	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5453606	5453712	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5453713	5453779	1	+	1	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5453713	5453779	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5453780	5453864	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5453865	5453909	1	+	0	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5453865	5453909	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5453910	5453994	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5453995	5454075	1	+	0	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5453995	5454075	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5454076	5454209	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5454210	5454411	1	+	0	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5454210	5454411	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5454412	5454491	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5454492	5454549	1	+	2	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5454492	5454549	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5454550	5454767	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5454768	5454890	1	+	1	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5454768	5454890	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5454891	5454992	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5454993	5455081	1	+	1	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5454993	5455081	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5455082	5455314	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5455315	5455407	1	+	2	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5455315	5455407	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5455408	5455539	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5455540	5455704	1	+	2	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5455540	5455704	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5455705	5455834	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5455835	5455968	0.94	+	2	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5455835	5455968	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5455969	5456070	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5456071	5456200	0.96	+	0	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5456071	5456200	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	intron	5456201	5456318	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	CDS	5456319	5456503	1	+	2	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	exon	5456319	5456503	.	+	.	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
Ledus.S4	AUGUSTUS	stop_codon	5456504	5456506	.	+	0	transcript_id "Ledus.S4G075400.t2"; gene_id "Ledus.S4G075400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg678.t1 is derived from g7539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4148246	4150549	.	-	.	Ledus.S2G056000
Ledus.S2	AUGUSTUS	transcript	4148246	4150549	.	-	.	transcript_id "Ledus.S2G056000.t1"; gene_id "Ledus.S2G056000"
Ledus.S2	AUGUSTUS	stop_codon	4148243	4148245	.	-	0	transcript_id "Ledus.S2G056000.t1"; gene_id "Ledus.S2G056000"
Ledus.S2	AUGUSTUS	CDS	4148246	4150549	1	-	0	transcript_id "Ledus.S2G056000.t1"; gene_id "Ledus.S2G056000"
Ledus.S2	AUGUSTUS	exon	4148246	4150549	.	-	.	transcript_id "Ledus.S2G056000.t1"; gene_id "Ledus.S2G056000"
Ledus.S2	AUGUSTUS	start_codon	4150547	4150549	.	-	0	transcript_id "Ledus.S2G056000.t1"; gene_id "Ledus.S2G056000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6017.t1 is derived from g3460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28420638	28420913	.	-	.	Ledus.S1G343800
Ledus.S1	AUGUSTUS	transcript	28420638	28420913	.	-	.	transcript_id "Ledus.S1G343800.t1"; gene_id "Ledus.S1G343800"
Ledus.S1	AUGUSTUS	stop_codon	28420635	28420637	.	-	0	transcript_id "Ledus.S1G343800.t1"; gene_id "Ledus.S1G343800"
Ledus.S1	AUGUSTUS	CDS	28420638	28420913	0.94	-	0	transcript_id "Ledus.S1G343800.t1"; gene_id "Ledus.S1G343800"
Ledus.S1	AUGUSTUS	exon	28420638	28420913	.	-	.	transcript_id "Ledus.S1G343800.t1"; gene_id "Ledus.S1G343800"
Ledus.S1	AUGUSTUS	start_codon	28420911	28420913	.	-	0	transcript_id "Ledus.S1G343800.t1"; gene_id "Ledus.S1G343800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5746.t1 is derived from g3185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26441511	26442270	.	+	.	Ledus.S1G316700
Ledus.S1	AUGUSTUS	transcript	26441511	26442270	.	+	.	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	start_codon	26441511	26441513	.	+	0	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	CDS	26441511	26441624	0.33	+	0	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	exon	26441511	26441624	.	+	.	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	intron	26441625	26441754	.	+	.	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	CDS	26441755	26441823	0.6	+	0	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	exon	26441755	26441823	.	+	.	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	intron	26441824	26441906	.	+	.	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	CDS	26441907	26441972	0.45	+	0	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	exon	26441907	26441972	.	+	.	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	intron	26441973	26442077	.	+	.	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	CDS	26442078	26442112	0.61	+	0	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	exon	26442078	26442112	.	+	.	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	intron	26442113	26442209	.	+	.	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	CDS	26442210	26442270	0.61	+	1	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	exon	26442210	26442270	.	+	.	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
Ledus.S1	AUGUSTUS	stop_codon	26442271	26442273	.	+	0	transcript_id "Ledus.S1G316700.t1"; gene_id "Ledus.S1G316700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6889.t1 is derived from g4333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34998360	34998719	.	+	.	Ledus.S1G431000
Ledus.S1	AUGUSTUS	transcript	34998360	34998719	.	+	.	transcript_id "Ledus.S1G431000.t1"; gene_id "Ledus.S1G431000"
Ledus.S1	AUGUSTUS	start_codon	34998360	34998362	.	+	0	transcript_id "Ledus.S1G431000.t1"; gene_id "Ledus.S1G431000"
Ledus.S1	AUGUSTUS	CDS	34998360	34998719	0.63	+	0	transcript_id "Ledus.S1G431000.t1"; gene_id "Ledus.S1G431000"
Ledus.S1	AUGUSTUS	exon	34998360	34998719	.	+	.	transcript_id "Ledus.S1G431000.t1"; gene_id "Ledus.S1G431000"
Ledus.S1	AUGUSTUS	stop_codon	34998720	34998722	.	+	0	transcript_id "Ledus.S1G431000.t1"; gene_id "Ledus.S1G431000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9433.t1 is derived from g10463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6709249	6709827	.	-	.	Ledus.S3G091000
Ledus.S3	AUGUSTUS	transcript	6709249	6709827	.	-	.	transcript_id "Ledus.S3G091000.t1"; gene_id "Ledus.S3G091000"
Ledus.S3	AUGUSTUS	stop_codon	6709246	6709248	.	-	0	transcript_id "Ledus.S3G091000.t1"; gene_id "Ledus.S3G091000"
Ledus.S3	AUGUSTUS	CDS	6709249	6709827	1	-	0	transcript_id "Ledus.S3G091000.t1"; gene_id "Ledus.S3G091000"
Ledus.S3	AUGUSTUS	exon	6709249	6709827	.	-	.	transcript_id "Ledus.S3G091000.t1"; gene_id "Ledus.S3G091000"
Ledus.S3	AUGUSTUS	start_codon	6709825	6709827	.	-	0	transcript_id "Ledus.S3G091000.t1"; gene_id "Ledus.S3G091000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10986.t1 is derived from g4604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1013520	1014698	.	+	.	Ledus.S4G014200
Ledus.S4	AUGUSTUS	transcript	1013520	1014698	.	+	.	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	start_codon	1013520	1013522	.	+	0	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	CDS	1013520	1013679	0.87	+	0	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	exon	1013520	1013679	.	+	.	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	intron	1013680	1013769	.	+	.	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	CDS	1013770	1013912	1	+	2	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	exon	1013770	1013912	.	+	.	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	intron	1013913	1014000	.	+	.	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	CDS	1014001	1014258	0.55	+	0	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	exon	1014001	1014258	.	+	.	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	intron	1014259	1014335	.	+	.	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	CDS	1014336	1014383	0.55	+	0	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	exon	1014336	1014383	.	+	.	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	intron	1014384	1014470	.	+	.	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	CDS	1014471	1014698	0.54	+	0	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	exon	1014471	1014698	.	+	.	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	stop_codon	1014699	1014701	.	+	0	transcript_id "Ledus.S4G014200.t1"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	transcript	1013520	1014698	.	+	.	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	start_codon	1013520	1013522	.	+	0	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	CDS	1013520	1013679	0.77	+	0	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	exon	1013520	1013679	.	+	.	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	intron	1013680	1013769	.	+	.	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	CDS	1013770	1013891	0.81	+	2	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	exon	1013770	1013891	.	+	.	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	intron	1013892	1014000	.	+	.	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	CDS	1014001	1014258	0.63	+	0	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	exon	1014001	1014258	.	+	.	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	intron	1014259	1014335	.	+	.	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	CDS	1014336	1014383	0.63	+	0	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	exon	1014336	1014383	.	+	.	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	intron	1014384	1014470	.	+	.	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	CDS	1014471	1014698	0.62	+	0	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	exon	1014471	1014698	.	+	.	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
Ledus.S4	AUGUSTUS	stop_codon	1014699	1014701	.	+	0	transcript_id "Ledus.S4G014200.t2"; gene_id "Ledus.S4G014200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg588.t1 is derived from g7449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3481276	3481650	.	-	.	Ledus.S2G047000
Ledus.S2	AUGUSTUS	transcript	3481276	3481650	.	-	.	transcript_id "Ledus.S2G047000.t1"; gene_id "Ledus.S2G047000"
Ledus.S2	AUGUSTUS	stop_codon	3481273	3481275	.	-	0	transcript_id "Ledus.S2G047000.t1"; gene_id "Ledus.S2G047000"
Ledus.S2	AUGUSTUS	CDS	3481276	3481650	0.49	-	0	transcript_id "Ledus.S2G047000.t1"; gene_id "Ledus.S2G047000"
Ledus.S2	AUGUSTUS	exon	3481276	3481650	.	-	.	transcript_id "Ledus.S2G047000.t1"; gene_id "Ledus.S2G047000"
Ledus.S2	AUGUSTUS	start_codon	3481648	3481650	.	-	0	transcript_id "Ledus.S2G047000.t1"; gene_id "Ledus.S2G047000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11668.t1 is derived from g5287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5825582	5826761	.	-	.	Ledus.S4G082400
Ledus.S4	AUGUSTUS	transcript	5825582	5826761	.	-	.	transcript_id "Ledus.S4G082400.t1"; gene_id "Ledus.S4G082400"
Ledus.S4	AUGUSTUS	stop_codon	5825579	5825581	.	-	0	transcript_id "Ledus.S4G082400.t1"; gene_id "Ledus.S4G082400"
Ledus.S4	AUGUSTUS	CDS	5825582	5825640	0.42	-	2	transcript_id "Ledus.S4G082400.t1"; gene_id "Ledus.S4G082400"
Ledus.S4	AUGUSTUS	exon	5825582	5825640	.	-	.	transcript_id "Ledus.S4G082400.t1"; gene_id "Ledus.S4G082400"
Ledus.S4	AUGUSTUS	intron	5825641	5825808	.	-	.	transcript_id "Ledus.S4G082400.t1"; gene_id "Ledus.S4G082400"
Ledus.S4	AUGUSTUS	CDS	5825809	5826516	0.57	-	2	transcript_id "Ledus.S4G082400.t1"; gene_id "Ledus.S4G082400"
Ledus.S4	AUGUSTUS	exon	5825809	5826516	.	-	.	transcript_id "Ledus.S4G082400.t1"; gene_id "Ledus.S4G082400"
Ledus.S4	AUGUSTUS	intron	5826517	5826616	.	-	.	transcript_id "Ledus.S4G082400.t1"; gene_id "Ledus.S4G082400"
Ledus.S4	AUGUSTUS	CDS	5826617	5826761	0.81	-	0	transcript_id "Ledus.S4G082400.t1"; gene_id "Ledus.S4G082400"
Ledus.S4	AUGUSTUS	exon	5826617	5826761	.	-	.	transcript_id "Ledus.S4G082400.t1"; gene_id "Ledus.S4G082400"
Ledus.S4	AUGUSTUS	start_codon	5826759	5826761	.	-	0	transcript_id "Ledus.S4G082400.t1"; gene_id "Ledus.S4G082400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12668.t1 is derived from g6290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13796676	13801563	.	-	.	Ledus.S4G182400
Ledus.S4	AUGUSTUS	transcript	13796676	13801563	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	stop_codon	13796673	13796675	.	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13796676	13796775	1	-	1	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13796676	13796775	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13796776	13796870	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13796871	13796917	1	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13796871	13796917	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13796918	13797002	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13797003	13797086	1	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13797003	13797086	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13797087	13797201	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13797202	13797285	0.96	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13797202	13797285	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13797286	13797416	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13797417	13797500	1	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13797417	13797500	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13797501	13797595	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13797596	13797652	1	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13797596	13797652	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13797653	13797806	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13797807	13797866	1	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13797807	13797866	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13797867	13798025	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13798026	13798118	1	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13798026	13798118	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13798119	13798210	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13798211	13798277	1	-	1	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13798211	13798277	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13798278	13798435	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13798436	13798530	0.98	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13798436	13798530	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13798531	13798643	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13798644	13798892	1	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13798644	13798892	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13798893	13799004	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13799005	13799195	0.78	-	2	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13799005	13799195	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13799196	13799362	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13799363	13799482	0.88	-	2	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13799363	13799482	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13799483	13799592	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13799593	13799643	1	-	2	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13799593	13799643	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13799644	13799736	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13799737	13799959	1	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13799737	13799959	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13799960	13800053	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13800054	13800216	0.75	-	1	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13800054	13800216	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13800217	13800375	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13800376	13800517	0.8	-	2	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13800376	13800517	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13800518	13800644	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13800645	13800792	1	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13800645	13800792	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13800793	13801144	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13801145	13801422	1	-	2	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13801145	13801422	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	intron	13801423	13801529	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	CDS	13801530	13801563	0.85	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	exon	13801530	13801563	.	-	.	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
Ledus.S4	AUGUSTUS	start_codon	13801561	13801563	.	-	0	transcript_id "Ledus.S4G182400.t1"; gene_id "Ledus.S4G182400"
# This transcript jg6191.t2 is derived from g3634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6192.t1 is derived from g3635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29478354	29479697	.	-	.	Ledus.S1G361300
Ledus.S1	AUGUSTUS	transcript	29478354	29479697	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	stop_codon	29478351	29478353	.	-	0	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	CDS	29478354	29478429	1	-	1	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	exon	29478354	29478429	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	intron	29478430	29478507	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	CDS	29478508	29478635	1	-	0	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	exon	29478508	29478635	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	intron	29478636	29478717	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	CDS	29478718	29478780	1	-	0	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	exon	29478718	29478780	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	intron	29478781	29478867	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	CDS	29478868	29478922	1	-	1	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	exon	29478868	29478922	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	intron	29478923	29479078	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	CDS	29479079	29479152	1	-	0	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	exon	29479079	29479152	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	intron	29479153	29479332	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	CDS	29479333	29479476	1	-	0	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	exon	29479333	29479476	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	intron	29479477	29479646	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	CDS	29479647	29479697	1	-	0	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	exon	29479647	29479697	.	-	.	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
Ledus.S1	AUGUSTUS	start_codon	29479695	29479697	.	-	0	transcript_id "Ledus.S1G361300.t1"; gene_id "Ledus.S1G361300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4536.t1 is derived from g1973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17579509	17586035	.	+	.	Ledus.S1G195700
Ledus.S1	AUGUSTUS	transcript	17579509	17586035	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	start_codon	17579509	17579511	.	+	0	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	CDS	17579509	17580781	0.88	+	0	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	exon	17579509	17580781	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	intron	17580782	17580905	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	CDS	17580906	17581385	1	+	2	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	exon	17580906	17581385	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	intron	17581386	17581883	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	CDS	17581884	17582185	0.97	+	2	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	exon	17581884	17582185	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	intron	17582186	17582288	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	CDS	17582289	17583074	0.99	+	0	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	exon	17582289	17583074	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	intron	17583075	17583245	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	CDS	17583246	17583524	1	+	0	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	exon	17583246	17583524	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	intron	17583525	17583660	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	CDS	17583661	17583822	1	+	0	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	exon	17583661	17583822	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	intron	17583823	17583923	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	CDS	17583924	17584656	0.8	+	0	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	exon	17583924	17584656	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	intron	17584657	17584733	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	CDS	17584734	17584740	0.79	+	2	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	exon	17584734	17584740	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	intron	17584741	17584798	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	CDS	17584799	17584868	0.78	+	1	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	exon	17584799	17584868	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	intron	17584869	17584983	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	CDS	17584984	17585199	1	+	0	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	exon	17584984	17585199	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	intron	17585200	17585341	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	CDS	17585342	17585602	1	+	0	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	exon	17585342	17585602	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	intron	17585603	17585723	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	CDS	17585724	17586035	0.74	+	0	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	exon	17585724	17586035	.	+	.	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
Ledus.S1	AUGUSTUS	stop_codon	17586036	17586038	.	+	0	transcript_id "Ledus.S1G195700.t1"; gene_id "Ledus.S1G195700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3061.t1 is derived from g496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5606731	5607236	.	+	.	Ledus.S1G048200
Ledus.S1	AUGUSTUS	transcript	5606731	5607236	.	+	.	transcript_id "Ledus.S1G048200.t1"; gene_id "Ledus.S1G048200"
Ledus.S1	AUGUSTUS	start_codon	5606731	5606733	.	+	0	transcript_id "Ledus.S1G048200.t1"; gene_id "Ledus.S1G048200"
Ledus.S1	AUGUSTUS	CDS	5606731	5606785	1	+	0	transcript_id "Ledus.S1G048200.t1"; gene_id "Ledus.S1G048200"
Ledus.S1	AUGUSTUS	exon	5606731	5606785	.	+	.	transcript_id "Ledus.S1G048200.t1"; gene_id "Ledus.S1G048200"
Ledus.S1	AUGUSTUS	intron	5606786	5606880	.	+	.	transcript_id "Ledus.S1G048200.t1"; gene_id "Ledus.S1G048200"
Ledus.S1	AUGUSTUS	CDS	5606881	5606904	0.88	+	2	transcript_id "Ledus.S1G048200.t1"; gene_id "Ledus.S1G048200"
Ledus.S1	AUGUSTUS	exon	5606881	5606904	.	+	.	transcript_id "Ledus.S1G048200.t1"; gene_id "Ledus.S1G048200"
Ledus.S1	AUGUSTUS	intron	5606905	5606988	.	+	.	transcript_id "Ledus.S1G048200.t1"; gene_id "Ledus.S1G048200"
Ledus.S1	AUGUSTUS	CDS	5606989	5607236	0.75	+	2	transcript_id "Ledus.S1G048200.t1"; gene_id "Ledus.S1G048200"
Ledus.S1	AUGUSTUS	exon	5606989	5607236	.	+	.	transcript_id "Ledus.S1G048200.t1"; gene_id "Ledus.S1G048200"
Ledus.S1	AUGUSTUS	stop_codon	5607237	5607239	.	+	0	transcript_id "Ledus.S1G048200.t1"; gene_id "Ledus.S1G048200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2030.t1 is derived from g8893.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14255899	14258478	.	-	.	Ledus.S2G191200
Ledus.S2	AUGUSTUS	transcript	14255899	14258478	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	stop_codon	14255896	14255898	.	-	0	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	CDS	14255899	14256023	0.99	-	2	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	exon	14255899	14256023	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	intron	14256024	14256113	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	CDS	14256114	14256177	1	-	0	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	exon	14256114	14256177	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	intron	14256178	14256271	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	CDS	14256272	14256395	1	-	1	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	exon	14256272	14256395	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	intron	14256396	14256470	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	CDS	14256471	14256550	1	-	0	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	exon	14256471	14256550	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	intron	14256551	14256633	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	CDS	14256634	14256784	1	-	1	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	exon	14256634	14256784	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	intron	14256785	14256895	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	CDS	14256896	14257135	0.85	-	1	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	exon	14256896	14257135	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	intron	14257136	14257248	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	CDS	14257249	14257475	0.92	-	0	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	exon	14257249	14257475	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	intron	14257476	14257581	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	CDS	14257582	14257699	1	-	1	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	exon	14257582	14257699	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	intron	14257700	14257921	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	CDS	14257922	14258478	0.95	-	0	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	exon	14257922	14258478	.	-	.	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
Ledus.S2	AUGUSTUS	start_codon	14258476	14258478	.	-	0	transcript_id "Ledus.S2G191200.t1"; gene_id "Ledus.S2G191200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6411.t1 is derived from g3854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31122500	31124209	.	-	.	Ledus.S1G383200
Ledus.S1	AUGUSTUS	transcript	31122500	31124209	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	stop_codon	31122497	31122499	.	-	0	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	CDS	31122500	31122616	1	-	0	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	exon	31122500	31122616	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	intron	31122617	31122702	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	CDS	31122703	31122738	1	-	0	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	exon	31122703	31122738	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	intron	31122739	31122823	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	CDS	31122824	31122907	1	-	0	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	exon	31122824	31122907	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	intron	31122908	31123023	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	CDS	31123024	31123083	0.98	-	0	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	exon	31123024	31123083	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	intron	31123084	31123309	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	CDS	31123310	31123366	1	-	0	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	exon	31123310	31123366	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	intron	31123367	31123468	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	CDS	31123469	31123543	0.99	-	0	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	exon	31123469	31123543	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	intron	31123544	31123675	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	CDS	31123676	31123738	0.93	-	0	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	exon	31123676	31123738	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	intron	31123739	31123840	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	CDS	31123841	31124209	0.69	-	0	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	exon	31123841	31124209	.	-	.	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
Ledus.S1	AUGUSTUS	start_codon	31124207	31124209	.	-	0	transcript_id "Ledus.S1G383200.t1"; gene_id "Ledus.S1G383200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12683.t1 is derived from g6305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13871143	13871740	.	-	.	Ledus.S4G183900
Ledus.S4	AUGUSTUS	transcript	13871143	13871740	.	-	.	transcript_id "Ledus.S4G183900.t1"; gene_id "Ledus.S4G183900"
Ledus.S4	AUGUSTUS	stop_codon	13871140	13871142	.	-	0	transcript_id "Ledus.S4G183900.t1"; gene_id "Ledus.S4G183900"
Ledus.S4	AUGUSTUS	CDS	13871143	13871459	0.54	-	2	transcript_id "Ledus.S4G183900.t1"; gene_id "Ledus.S4G183900"
Ledus.S4	AUGUSTUS	exon	13871143	13871459	.	-	.	transcript_id "Ledus.S4G183900.t1"; gene_id "Ledus.S4G183900"
Ledus.S4	AUGUSTUS	intron	13871460	13871676	.	-	.	transcript_id "Ledus.S4G183900.t1"; gene_id "Ledus.S4G183900"
Ledus.S4	AUGUSTUS	CDS	13871677	13871740	0.55	-	0	transcript_id "Ledus.S4G183900.t1"; gene_id "Ledus.S4G183900"
Ledus.S4	AUGUSTUS	exon	13871677	13871740	.	-	.	transcript_id "Ledus.S4G183900.t1"; gene_id "Ledus.S4G183900"
Ledus.S4	AUGUSTUS	start_codon	13871738	13871740	.	-	0	transcript_id "Ledus.S4G183900.t1"; gene_id "Ledus.S4G183900"
# This transcript jg8218.t2 is derived from g12889.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8219.t1 is derived from g12890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9995466	9996254	.	-	.	Ledus.S5G099700
Ledus.S5	AUGUSTUS	transcript	9995466	9996254	.	-	.	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	stop_codon	9995463	9995465	.	-	0	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	CDS	9995466	9995589	1	-	1	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	exon	9995466	9995589	.	-	.	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	intron	9995590	9995673	.	-	.	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	CDS	9995674	9995702	1	-	0	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	exon	9995674	9995702	.	-	.	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	intron	9995703	9995810	.	-	.	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	CDS	9995811	9995912	1	-	0	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	exon	9995811	9995912	.	-	.	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	intron	9995913	9996251	.	-	.	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	CDS	9996252	9996254	0.96	-	0	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	exon	9996252	9996254	.	-	.	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
Ledus.S5	AUGUSTUS	start_codon	9996252	9996254	.	-	0	transcript_id "Ledus.S5G099700.t1"; gene_id "Ledus.S5G099700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9157.t1 is derived from g10187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4934294	4935128	.	-	.	Ledus.S3G063400
Ledus.S3	AUGUSTUS	transcript	4934294	4935128	.	-	.	transcript_id "Ledus.S3G063400.t1"; gene_id "Ledus.S3G063400"
Ledus.S3	AUGUSTUS	stop_codon	4934291	4934293	.	-	0	transcript_id "Ledus.S3G063400.t1"; gene_id "Ledus.S3G063400"
Ledus.S3	AUGUSTUS	CDS	4934294	4934583	0.59	-	2	transcript_id "Ledus.S3G063400.t1"; gene_id "Ledus.S3G063400"
Ledus.S3	AUGUSTUS	exon	4934294	4934583	.	-	.	transcript_id "Ledus.S3G063400.t1"; gene_id "Ledus.S3G063400"
Ledus.S3	AUGUSTUS	intron	4934584	4934716	.	-	.	transcript_id "Ledus.S3G063400.t1"; gene_id "Ledus.S3G063400"
Ledus.S3	AUGUSTUS	CDS	4934717	4934954	0.27	-	0	transcript_id "Ledus.S3G063400.t1"; gene_id "Ledus.S3G063400"
Ledus.S3	AUGUSTUS	exon	4934717	4934954	.	-	.	transcript_id "Ledus.S3G063400.t1"; gene_id "Ledus.S3G063400"
Ledus.S3	AUGUSTUS	intron	4934955	4935056	.	-	.	transcript_id "Ledus.S3G063400.t1"; gene_id "Ledus.S3G063400"
Ledus.S3	AUGUSTUS	CDS	4935057	4935128	0.49	-	0	transcript_id "Ledus.S3G063400.t1"; gene_id "Ledus.S3G063400"
Ledus.S3	AUGUSTUS	exon	4935057	4935128	.	-	.	transcript_id "Ledus.S3G063400.t1"; gene_id "Ledus.S3G063400"
Ledus.S3	AUGUSTUS	start_codon	4935126	4935128	.	-	0	transcript_id "Ledus.S3G063400.t1"; gene_id "Ledus.S3G063400"
# This transcript jg7748.t2 is derived from g12419.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7749.t1 is derived from g12420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6004483	6005159	.	+	.	Ledus.S5G052700
Ledus.S5	AUGUSTUS	transcript	6004483	6005159	.	+	.	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	start_codon	6004483	6004485	.	+	0	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	CDS	6004483	6004554	0.86	+	0	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	exon	6004483	6004554	.	+	.	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	intron	6004555	6004638	.	+	.	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	CDS	6004639	6004715	1	+	0	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	exon	6004639	6004715	.	+	.	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	intron	6004716	6004806	.	+	.	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	CDS	6004807	6004897	1	+	1	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	exon	6004807	6004897	.	+	.	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	intron	6004898	6004991	.	+	.	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	CDS	6004992	6005159	1	+	0	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	exon	6004992	6005159	.	+	.	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
Ledus.S5	AUGUSTUS	stop_codon	6005160	6005162	.	+	0	transcript_id "Ledus.S5G052700.t1"; gene_id "Ledus.S5G052700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11124.t1 is derived from g4742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2065262	2065570	.	-	.	Ledus.S4G028000
Ledus.S4	AUGUSTUS	transcript	2065262	2065570	.	-	.	transcript_id "Ledus.S4G028000.t1"; gene_id "Ledus.S4G028000"
Ledus.S4	AUGUSTUS	stop_codon	2065259	2065261	.	-	0	transcript_id "Ledus.S4G028000.t1"; gene_id "Ledus.S4G028000"
Ledus.S4	AUGUSTUS	CDS	2065262	2065570	0.94	-	0	transcript_id "Ledus.S4G028000.t1"; gene_id "Ledus.S4G028000"
Ledus.S4	AUGUSTUS	exon	2065262	2065570	.	-	.	transcript_id "Ledus.S4G028000.t1"; gene_id "Ledus.S4G028000"
Ledus.S4	AUGUSTUS	start_codon	2065568	2065570	.	-	0	transcript_id "Ledus.S4G028000.t1"; gene_id "Ledus.S4G028000"
# This transcript jg142.t2 is derived from g7003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg143.t1 is derived from g7004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	263175	264117	.	-	.	Ledus.S2G002500
Ledus.S2	AUGUSTUS	transcript	263175	264117	.	-	.	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	stop_codon	263172	263174	.	-	0	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	CDS	263175	263244	0.6	-	1	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	exon	263175	263244	.	-	.	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	intron	263245	263452	.	-	.	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	CDS	263453	263549	0.63	-	2	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	exon	263453	263549	.	-	.	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	intron	263550	263650	.	-	.	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	CDS	263651	263663	0.33	-	0	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	exon	263651	263663	.	-	.	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	intron	263664	263926	.	-	.	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	CDS	263927	263991	0.31	-	2	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	exon	263927	263991	.	-	.	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	intron	263992	264080	.	-	.	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	CDS	264081	264117	0.23	-	0	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	exon	264081	264117	.	-	.	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
Ledus.S2	AUGUSTUS	start_codon	264115	264117	.	-	0	transcript_id "Ledus.S2G002500.t1"; gene_id "Ledus.S2G002500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12482.t1 is derived from g6103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12312100	12312664	.	-	.	Ledus.S4G163800
Ledus.S4	AUGUSTUS	transcript	12312100	12312664	.	-	.	transcript_id "Ledus.S4G163800.t1"; gene_id "Ledus.S4G163800"
Ledus.S4	AUGUSTUS	stop_codon	12312097	12312099	.	-	0	transcript_id "Ledus.S4G163800.t1"; gene_id "Ledus.S4G163800"
Ledus.S4	AUGUSTUS	CDS	12312100	12312224	1	-	2	transcript_id "Ledus.S4G163800.t1"; gene_id "Ledus.S4G163800"
Ledus.S4	AUGUSTUS	exon	12312100	12312224	.	-	.	transcript_id "Ledus.S4G163800.t1"; gene_id "Ledus.S4G163800"
Ledus.S4	AUGUSTUS	intron	12312225	12312543	.	-	.	transcript_id "Ledus.S4G163800.t1"; gene_id "Ledus.S4G163800"
Ledus.S4	AUGUSTUS	CDS	12312544	12312664	0.94	-	0	transcript_id "Ledus.S4G163800.t1"; gene_id "Ledus.S4G163800"
Ledus.S4	AUGUSTUS	exon	12312544	12312664	.	-	.	transcript_id "Ledus.S4G163800.t1"; gene_id "Ledus.S4G163800"
Ledus.S4	AUGUSTUS	start_codon	12312662	12312664	.	-	0	transcript_id "Ledus.S4G163800.t1"; gene_id "Ledus.S4G163800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1343.t1 is derived from g8204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9338987	9342157	.	+	.	Ledus.S2G122500
Ledus.S2	AUGUSTUS	transcript	9338987	9342157	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	start_codon	9338987	9338989	.	+	0	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	CDS	9338987	9339088	0.91	+	0	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	exon	9338987	9339088	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	intron	9339089	9339177	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	CDS	9339178	9339272	1	+	0	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	exon	9339178	9339272	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	intron	9339273	9339348	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	CDS	9339349	9339449	1	+	1	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	exon	9339349	9339449	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	intron	9339450	9339529	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	CDS	9339530	9339685	1	+	2	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	exon	9339530	9339685	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	intron	9339686	9339744	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	CDS	9339745	9339856	1	+	2	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	exon	9339745	9339856	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	intron	9339857	9339933	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	CDS	9339934	9340147	1	+	1	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	exon	9339934	9340147	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	intron	9340148	9340227	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	CDS	9340228	9340551	1	+	0	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	exon	9340228	9340551	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	intron	9340552	9340635	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	CDS	9340636	9340724	1	+	0	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	exon	9340636	9340724	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	intron	9340725	9340796	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	CDS	9340797	9341024	1	+	1	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	exon	9340797	9341024	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	intron	9341025	9341110	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	CDS	9341111	9341222	1	+	1	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	exon	9341111	9341222	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	intron	9341223	9341297	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	CDS	9341298	9341514	1	+	0	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	exon	9341298	9341514	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	intron	9341515	9341579	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	CDS	9341580	9342157	1	+	2	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	exon	9341580	9342157	.	+	.	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
Ledus.S2	AUGUSTUS	stop_codon	9342158	9342160	.	+	0	transcript_id "Ledus.S2G122500.t1"; gene_id "Ledus.S2G122500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5283.t1 is derived from g2722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22849111	22850672	.	+	.	Ledus.S1G270400
Ledus.S1	AUGUSTUS	transcript	22849111	22850672	.	+	.	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	start_codon	22849111	22849113	.	+	0	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	CDS	22849111	22849650	0.74	+	0	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	exon	22849111	22849650	.	+	.	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	intron	22849651	22849736	.	+	.	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	CDS	22849737	22849988	1	+	0	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	exon	22849737	22849988	.	+	.	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	intron	22849989	22850069	.	+	.	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	CDS	22850070	22850351	1	+	0	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	exon	22850070	22850351	.	+	.	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	intron	22850352	22850440	.	+	.	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	CDS	22850441	22850530	1	+	0	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	exon	22850441	22850530	.	+	.	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	intron	22850531	22850660	.	+	.	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	CDS	22850661	22850672	1	+	0	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	exon	22850661	22850672	.	+	.	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
Ledus.S1	AUGUSTUS	stop_codon	22850673	22850675	.	+	0	transcript_id "Ledus.S1G270400.t1"; gene_id "Ledus.S1G270400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11102.t1 is derived from g4720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1791122	1792690	.	+	.	Ledus.S4G025800
Ledus.S4	AUGUSTUS	transcript	1791122	1792690	.	+	.	transcript_id "Ledus.S4G025800.t1"; gene_id "Ledus.S4G025800"
Ledus.S4	AUGUSTUS	start_codon	1791122	1791124	.	+	0	transcript_id "Ledus.S4G025800.t1"; gene_id "Ledus.S4G025800"
Ledus.S4	AUGUSTUS	CDS	1791122	1792690	1	+	0	transcript_id "Ledus.S4G025800.t1"; gene_id "Ledus.S4G025800"
Ledus.S4	AUGUSTUS	exon	1791122	1792690	.	+	.	transcript_id "Ledus.S4G025800.t1"; gene_id "Ledus.S4G025800"
Ledus.S4	AUGUSTUS	stop_codon	1792691	1792693	.	+	0	transcript_id "Ledus.S4G025800.t1"; gene_id "Ledus.S4G025800"
Ledus.S4	AUGUSTUS	transcript	1792451	1792690	.	+	.	transcript_id "Ledus.S4G025800.t2"; gene_id "Ledus.S4G025800"
Ledus.S4	AUGUSTUS	start_codon	1792451	1792453	.	+	0	transcript_id "Ledus.S4G025800.t2"; gene_id "Ledus.S4G025800"
Ledus.S4	AUGUSTUS	CDS	1792451	1792690	0.31	+	0	transcript_id "Ledus.S4G025800.t2"; gene_id "Ledus.S4G025800"
Ledus.S4	AUGUSTUS	exon	1792451	1792690	.	+	.	transcript_id "Ledus.S4G025800.t2"; gene_id "Ledus.S4G025800"
Ledus.S4	AUGUSTUS	stop_codon	1792691	1792693	.	+	0	transcript_id "Ledus.S4G025800.t2"; gene_id "Ledus.S4G025800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9178.t1 is derived from g10208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5256037	5257676	.	-	.	Ledus.S3G065500
Ledus.S3	AUGUSTUS	transcript	5256037	5257676	.	-	.	transcript_id "Ledus.S3G065500.t1"; gene_id "Ledus.S3G065500"
Ledus.S3	AUGUSTUS	stop_codon	5256034	5256036	.	-	0	transcript_id "Ledus.S3G065500.t1"; gene_id "Ledus.S3G065500"
Ledus.S3	AUGUSTUS	CDS	5256037	5256267	0.49	-	0	transcript_id "Ledus.S3G065500.t1"; gene_id "Ledus.S3G065500"
Ledus.S3	AUGUSTUS	exon	5256037	5256267	.	-	.	transcript_id "Ledus.S3G065500.t1"; gene_id "Ledus.S3G065500"
Ledus.S3	AUGUSTUS	intron	5256268	5256360	.	-	.	transcript_id "Ledus.S3G065500.t1"; gene_id "Ledus.S3G065500"
Ledus.S3	AUGUSTUS	CDS	5256361	5257407	0.89	-	0	transcript_id "Ledus.S3G065500.t1"; gene_id "Ledus.S3G065500"
Ledus.S3	AUGUSTUS	exon	5256361	5257407	.	-	.	transcript_id "Ledus.S3G065500.t1"; gene_id "Ledus.S3G065500"
Ledus.S3	AUGUSTUS	intron	5257408	5257529	.	-	.	transcript_id "Ledus.S3G065500.t1"; gene_id "Ledus.S3G065500"
Ledus.S3	AUGUSTUS	CDS	5257530	5257676	0.94	-	0	transcript_id "Ledus.S3G065500.t1"; gene_id "Ledus.S3G065500"
Ledus.S3	AUGUSTUS	exon	5257530	5257676	.	-	.	transcript_id "Ledus.S3G065500.t1"; gene_id "Ledus.S3G065500"
Ledus.S3	AUGUSTUS	start_codon	5257674	5257676	.	-	0	transcript_id "Ledus.S3G065500.t1"; gene_id "Ledus.S3G065500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10830.t1 is derived from g11862.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18095953	18096782	.	+	.	Ledus.S3G230700
Ledus.S3	AUGUSTUS	transcript	18095953	18096782	.	+	.	transcript_id "Ledus.S3G230700.t1"; gene_id "Ledus.S3G230700"
Ledus.S3	AUGUSTUS	start_codon	18095953	18095955	.	+	0	transcript_id "Ledus.S3G230700.t1"; gene_id "Ledus.S3G230700"
Ledus.S3	AUGUSTUS	CDS	18095953	18096061	0.38	+	0	transcript_id "Ledus.S3G230700.t1"; gene_id "Ledus.S3G230700"
Ledus.S3	AUGUSTUS	exon	18095953	18096061	.	+	.	transcript_id "Ledus.S3G230700.t1"; gene_id "Ledus.S3G230700"
Ledus.S3	AUGUSTUS	intron	18096062	18096165	.	+	.	transcript_id "Ledus.S3G230700.t1"; gene_id "Ledus.S3G230700"
Ledus.S3	AUGUSTUS	CDS	18096166	18096281	1	+	2	transcript_id "Ledus.S3G230700.t1"; gene_id "Ledus.S3G230700"
Ledus.S3	AUGUSTUS	exon	18096166	18096281	.	+	.	transcript_id "Ledus.S3G230700.t1"; gene_id "Ledus.S3G230700"
Ledus.S3	AUGUSTUS	intron	18096282	18096377	.	+	.	transcript_id "Ledus.S3G230700.t1"; gene_id "Ledus.S3G230700"
Ledus.S3	AUGUSTUS	CDS	18096378	18096782	1	+	0	transcript_id "Ledus.S3G230700.t1"; gene_id "Ledus.S3G230700"
Ledus.S3	AUGUSTUS	exon	18096378	18096782	.	+	.	transcript_id "Ledus.S3G230700.t1"; gene_id "Ledus.S3G230700"
Ledus.S3	AUGUSTUS	stop_codon	18096783	18096785	.	+	0	transcript_id "Ledus.S3G230700.t1"; gene_id "Ledus.S3G230700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1935.t1 is derived from g8798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13588468	13589825	.	-	.	Ledus.S2G181700
Ledus.S2	AUGUSTUS	transcript	13588468	13589825	.	-	.	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	stop_codon	13588465	13588467	.	-	0	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	CDS	13588468	13588518	1	-	0	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	exon	13588468	13588518	.	-	.	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	intron	13588519	13588610	.	-	.	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	CDS	13588611	13588677	1	-	1	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	exon	13588611	13588677	.	-	.	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	intron	13588678	13588883	.	-	.	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	CDS	13588884	13588971	1	-	2	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	exon	13588884	13588971	.	-	.	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	intron	13588972	13589058	.	-	.	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	CDS	13589059	13589335	0.99	-	0	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	exon	13589059	13589335	.	-	.	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	intron	13589336	13589663	.	-	.	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	CDS	13589664	13589825	0.98	-	0	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	exon	13589664	13589825	.	-	.	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	start_codon	13589823	13589825	.	-	0	transcript_id "Ledus.S2G181700.t1"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	transcript	13588468	13589825	.	-	.	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	stop_codon	13588465	13588467	.	-	0	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	CDS	13588468	13588518	0.99	-	0	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	exon	13588468	13588518	.	-	.	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	intron	13588519	13588610	.	-	.	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	CDS	13588611	13588686	1	-	1	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	exon	13588611	13588686	.	-	.	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	intron	13588687	13588883	.	-	.	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	CDS	13588884	13588971	1	-	2	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	exon	13588884	13588971	.	-	.	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	intron	13588972	13589058	.	-	.	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	CDS	13589059	13589335	0.99	-	0	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	exon	13589059	13589335	.	-	.	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	intron	13589336	13589663	.	-	.	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	CDS	13589664	13589825	0.96	-	0	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	exon	13589664	13589825	.	-	.	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
Ledus.S2	AUGUSTUS	start_codon	13589823	13589825	.	-	0	transcript_id "Ledus.S2G181700.t2"; gene_id "Ledus.S2G181700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7177.t1 is derived from g6708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1984605	1987061	.	-	.	Ledus.C7G023800
Ledus.C7	AUGUSTUS	transcript	1984605	1987061	.	-	.	transcript_id "Ledus.C7G023800.t1"; gene_id "Ledus.C7G023800"
Ledus.C7	AUGUSTUS	stop_codon	1984602	1984604	.	-	0	transcript_id "Ledus.C7G023800.t1"; gene_id "Ledus.C7G023800"
Ledus.C7	AUGUSTUS	CDS	1984605	1987061	0.73	-	0	transcript_id "Ledus.C7G023800.t1"; gene_id "Ledus.C7G023800"
Ledus.C7	AUGUSTUS	exon	1984605	1987061	.	-	.	transcript_id "Ledus.C7G023800.t1"; gene_id "Ledus.C7G023800"
Ledus.C7	AUGUSTUS	start_codon	1987059	1987061	.	-	0	transcript_id "Ledus.C7G023800.t1"; gene_id "Ledus.C7G023800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7972.t1 is derived from g12643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8291653	8292071	.	+	.	Ledus.S5G075000
Ledus.S5	AUGUSTUS	transcript	8291653	8292071	.	+	.	transcript_id "Ledus.S5G075000.t1"; gene_id "Ledus.S5G075000"
Ledus.S5	AUGUSTUS	start_codon	8291653	8291655	.	+	0	transcript_id "Ledus.S5G075000.t1"; gene_id "Ledus.S5G075000"
Ledus.S5	AUGUSTUS	CDS	8291653	8291808	0.68	+	0	transcript_id "Ledus.S5G075000.t1"; gene_id "Ledus.S5G075000"
Ledus.S5	AUGUSTUS	exon	8291653	8291808	.	+	.	transcript_id "Ledus.S5G075000.t1"; gene_id "Ledus.S5G075000"
Ledus.S5	AUGUSTUS	intron	8291809	8292017	.	+	.	transcript_id "Ledus.S5G075000.t1"; gene_id "Ledus.S5G075000"
Ledus.S5	AUGUSTUS	CDS	8292018	8292071	0.58	+	0	transcript_id "Ledus.S5G075000.t1"; gene_id "Ledus.S5G075000"
Ledus.S5	AUGUSTUS	exon	8292018	8292071	.	+	.	transcript_id "Ledus.S5G075000.t1"; gene_id "Ledus.S5G075000"
Ledus.S5	AUGUSTUS	stop_codon	8292072	8292074	.	+	0	transcript_id "Ledus.S5G075000.t1"; gene_id "Ledus.S5G075000"
# This transcript jg2035.t2 is derived from g8898.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2036.t1 is derived from g8899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14275503	14277547	.	+	.	Ledus.S2G191800
Ledus.S2	AUGUSTUS	transcript	14275503	14277547	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	start_codon	14275503	14275505	.	+	0	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	CDS	14275503	14275518	0.76	+	0	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	exon	14275503	14275518	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	intron	14275519	14275646	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	CDS	14275647	14275736	0.8	+	2	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	exon	14275647	14275736	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	intron	14275737	14276029	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	CDS	14276030	14276070	1	+	2	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	exon	14276030	14276070	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	intron	14276071	14276194	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	CDS	14276195	14276252	1	+	0	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	exon	14276195	14276252	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	intron	14276253	14276335	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	CDS	14276336	14276429	1	+	2	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	exon	14276336	14276429	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	intron	14276430	14276571	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	CDS	14276572	14276656	1	+	1	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	exon	14276572	14276656	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	intron	14276657	14276742	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	CDS	14276743	14276808	1	+	0	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	exon	14276743	14276808	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	intron	14276809	14276939	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	CDS	14276940	14276972	0.8	+	0	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	exon	14276940	14276972	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	intron	14276973	14277130	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	CDS	14277131	14277186	0.73	+	0	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	exon	14277131	14277186	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	intron	14277187	14277423	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	CDS	14277424	14277547	0.93	+	1	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	exon	14277424	14277547	.	+	.	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
Ledus.S2	AUGUSTUS	stop_codon	14277548	14277550	.	+	0	transcript_id "Ledus.S2G191800.t1"; gene_id "Ledus.S2G191800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1934.t1 is derived from g8797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13579386	13581644	.	+	.	Ledus.S2G181600
Ledus.S2	AUGUSTUS	transcript	13579386	13581644	.	+	.	transcript_id "Ledus.S2G181600.t1"; gene_id "Ledus.S2G181600"
Ledus.S2	AUGUSTUS	start_codon	13579386	13579388	.	+	0	transcript_id "Ledus.S2G181600.t1"; gene_id "Ledus.S2G181600"
Ledus.S2	AUGUSTUS	CDS	13579386	13581644	1	+	0	transcript_id "Ledus.S2G181600.t1"; gene_id "Ledus.S2G181600"
Ledus.S2	AUGUSTUS	exon	13579386	13581644	.	+	.	transcript_id "Ledus.S2G181600.t1"; gene_id "Ledus.S2G181600"
Ledus.S2	AUGUSTUS	stop_codon	13581645	13581647	.	+	0	transcript_id "Ledus.S2G181600.t1"; gene_id "Ledus.S2G181600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2137.t1 is derived from g9000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15050583	15051443	.	-	.	Ledus.S2G201900
Ledus.S2	AUGUSTUS	transcript	15050583	15051443	.	-	.	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	stop_codon	15050580	15050582	.	-	0	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	CDS	15050583	15050631	0.38	-	1	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	exon	15050583	15050631	.	-	.	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	intron	15050632	15050709	.	-	.	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	CDS	15050710	15050763	0.37	-	1	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	exon	15050710	15050763	.	-	.	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	intron	15050764	15050924	.	-	.	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	CDS	15050925	15051066	0.39	-	2	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	exon	15050925	15051066	.	-	.	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	intron	15051067	15051193	.	-	.	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	CDS	15051194	15051443	0.65	-	0	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	exon	15051194	15051443	.	-	.	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
Ledus.S2	AUGUSTUS	start_codon	15051441	15051443	.	-	0	transcript_id "Ledus.S2G201900.t1"; gene_id "Ledus.S2G201900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2301.t1 is derived from g9164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17096629	17097771	.	+	.	Ledus.S2G218300
Ledus.S2	AUGUSTUS	transcript	17096629	17097771	.	+	.	transcript_id "Ledus.S2G218300.t1"; gene_id "Ledus.S2G218300"
Ledus.S2	AUGUSTUS	start_codon	17096629	17096631	.	+	0	transcript_id "Ledus.S2G218300.t1"; gene_id "Ledus.S2G218300"
Ledus.S2	AUGUSTUS	CDS	17096629	17097771	0.78	+	0	transcript_id "Ledus.S2G218300.t1"; gene_id "Ledus.S2G218300"
Ledus.S2	AUGUSTUS	exon	17096629	17097771	.	+	.	transcript_id "Ledus.S2G218300.t1"; gene_id "Ledus.S2G218300"
Ledus.S2	AUGUSTUS	stop_codon	17097772	17097774	.	+	0	transcript_id "Ledus.S2G218300.t1"; gene_id "Ledus.S2G218300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2917.t1 is derived from g352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4575995	4579289	.	+	.	Ledus.S1G033800
Ledus.S1	AUGUSTUS	transcript	4575995	4579289	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	start_codon	4575995	4575997	.	+	0	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4575995	4576230	0.53	+	0	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4575995	4576230	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4576231	4576313	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4576314	4576545	1	+	1	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4576314	4576545	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4576546	4576631	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4576632	4576757	1	+	0	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4576632	4576757	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4576758	4576870	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4576871	4577020	1	+	0	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4576871	4577020	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4577021	4577096	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4577097	4577215	1	+	0	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4577097	4577215	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4577216	4577293	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4577294	4577370	1	+	1	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4577294	4577370	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4577371	4577464	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4577465	4577754	1	+	2	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4577465	4577754	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4577755	4577828	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4577829	4578071	1	+	0	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4577829	4578071	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4578072	4578179	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4578180	4578253	0.78	+	0	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4578180	4578253	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4578254	4578376	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4578377	4578470	0.78	+	1	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4578377	4578470	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4578471	4578555	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4578556	4578705	1	+	0	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4578556	4578705	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4578706	4578790	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4578791	4578865	1	+	0	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4578791	4578865	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4578866	4578938	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4578939	4579038	1	+	0	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4578939	4579038	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	intron	4579039	4579125	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	CDS	4579126	4579289	0.97	+	2	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	exon	4579126	4579289	.	+	.	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
Ledus.S1	AUGUSTUS	stop_codon	4579290	4579292	.	+	0	transcript_id "Ledus.S1G033800.t1"; gene_id "Ledus.S1G033800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7049.t1 is derived from g6580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1020755	1025288	.	-	.	Ledus.C7G011000
Ledus.C7	AUGUSTUS	transcript	1020755	1025288	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	stop_codon	1020752	1020754	.	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1020755	1020859	0.99	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1020755	1020859	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1020860	1020981	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1020982	1021047	1	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1020982	1021047	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1021048	1021135	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1021136	1021226	0.98	-	1	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1021136	1021226	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1021227	1021335	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1021336	1021514	1	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1021336	1021514	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1021515	1021630	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1021631	1021744	1	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1021631	1021744	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1021745	1021922	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1021923	1022036	1	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1021923	1022036	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1022037	1022129	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1022130	1022267	0.35	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1022130	1022267	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1022268	1022593	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1022594	1022750	0.59	-	1	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1022594	1022750	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1022751	1022837	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1022838	1022890	1	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1022838	1022890	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1022891	1022987	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1022988	1023050	1	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1022988	1023050	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1023051	1023247	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1023248	1023322	1	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1023248	1023322	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1023323	1023456	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1023457	1023519	1	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1023457	1023519	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1023520	1023618	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1023619	1023708	1	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1023619	1023708	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1023709	1023840	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1023841	1024215	0.98	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1023841	1024215	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1024216	1024292	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1024293	1024571	0.48	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1024293	1024571	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1024572	1024675	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1024676	1024751	0.97	-	1	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1024676	1024751	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1024752	1024869	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1024870	1024934	1	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1024870	1024934	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	intron	1024935	1025165	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	CDS	1025166	1025288	0.86	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	exon	1025166	1025288	.	-	.	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
Ledus.C7	AUGUSTUS	start_codon	1025286	1025288	.	-	0	transcript_id "Ledus.C7G011000.t1"; gene_id "Ledus.C7G011000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4157.t1 is derived from g1593.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15004245	15004858	.	-	.	Ledus.S1G157800
Ledus.S1	AUGUSTUS	transcript	15004245	15004858	.	-	.	transcript_id "Ledus.S1G157800.t1"; gene_id "Ledus.S1G157800"
Ledus.S1	AUGUSTUS	stop_codon	15004242	15004244	.	-	0	transcript_id "Ledus.S1G157800.t1"; gene_id "Ledus.S1G157800"
Ledus.S1	AUGUSTUS	CDS	15004245	15004409	0.77	-	0	transcript_id "Ledus.S1G157800.t1"; gene_id "Ledus.S1G157800"
Ledus.S1	AUGUSTUS	exon	15004245	15004409	.	-	.	transcript_id "Ledus.S1G157800.t1"; gene_id "Ledus.S1G157800"
Ledus.S1	AUGUSTUS	intron	15004410	15004753	.	-	.	transcript_id "Ledus.S1G157800.t1"; gene_id "Ledus.S1G157800"
Ledus.S1	AUGUSTUS	CDS	15004754	15004858	0.73	-	0	transcript_id "Ledus.S1G157800.t1"; gene_id "Ledus.S1G157800"
Ledus.S1	AUGUSTUS	exon	15004754	15004858	.	-	.	transcript_id "Ledus.S1G157800.t1"; gene_id "Ledus.S1G157800"
Ledus.S1	AUGUSTUS	start_codon	15004856	15004858	.	-	0	transcript_id "Ledus.S1G157800.t1"; gene_id "Ledus.S1G157800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6707.t1 is derived from g4150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33427616	33428101	.	-	.	Ledus.S1G412800
Ledus.S1	AUGUSTUS	transcript	33427616	33428101	.	-	.	transcript_id "Ledus.S1G412800.t1"; gene_id "Ledus.S1G412800"
Ledus.S1	AUGUSTUS	stop_codon	33427613	33427615	.	-	0	transcript_id "Ledus.S1G412800.t1"; gene_id "Ledus.S1G412800"
Ledus.S1	AUGUSTUS	CDS	33427616	33427680	0.65	-	2	transcript_id "Ledus.S1G412800.t1"; gene_id "Ledus.S1G412800"
Ledus.S1	AUGUSTUS	exon	33427616	33427680	.	-	.	transcript_id "Ledus.S1G412800.t1"; gene_id "Ledus.S1G412800"
Ledus.S1	AUGUSTUS	intron	33427681	33427830	.	-	.	transcript_id "Ledus.S1G412800.t1"; gene_id "Ledus.S1G412800"
Ledus.S1	AUGUSTUS	CDS	33427831	33428101	0.4	-	0	transcript_id "Ledus.S1G412800.t1"; gene_id "Ledus.S1G412800"
Ledus.S1	AUGUSTUS	exon	33427831	33428101	.	-	.	transcript_id "Ledus.S1G412800.t1"; gene_id "Ledus.S1G412800"
Ledus.S1	AUGUSTUS	start_codon	33428099	33428101	.	-	0	transcript_id "Ledus.S1G412800.t1"; gene_id "Ledus.S1G412800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4577.t1 is derived from g2014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17856189	17857789	.	-	.	Ledus.S1G199800
Ledus.S1	AUGUSTUS	transcript	17856189	17857789	.	-	.	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	stop_codon	17856186	17856188	.	-	0	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	CDS	17856189	17856408	1	-	1	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	exon	17856189	17856408	.	-	.	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	intron	17856409	17856504	.	-	.	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	CDS	17856505	17856722	1	-	0	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	exon	17856505	17856722	.	-	.	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	intron	17856723	17856808	.	-	.	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	CDS	17856809	17857174	1	-	0	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	exon	17856809	17857174	.	-	.	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	intron	17857175	17857255	.	-	.	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	CDS	17857256	17857446	0.99	-	2	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	exon	17857256	17857446	.	-	.	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	intron	17857447	17857527	.	-	.	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	CDS	17857528	17857789	0.64	-	0	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	exon	17857528	17857789	.	-	.	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
Ledus.S1	AUGUSTUS	start_codon	17857787	17857789	.	-	0	transcript_id "Ledus.S1G199800.t1"; gene_id "Ledus.S1G199800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2873.t1 is derived from g308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4302278	4303793	.	-	.	Ledus.S1G029400
Ledus.S1	AUGUSTUS	transcript	4302278	4303793	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	stop_codon	4302275	4302277	.	-	0	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	CDS	4302278	4302382	0.98	-	0	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	exon	4302278	4302382	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	intron	4302383	4302468	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	CDS	4302469	4302573	1	-	0	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	exon	4302469	4302573	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	intron	4302574	4302681	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	CDS	4302682	4302761	1	-	2	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	exon	4302682	4302761	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	intron	4302762	4302878	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	CDS	4302879	4303005	1	-	0	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	exon	4302879	4303005	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	intron	4303006	4303173	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	CDS	4303174	4303239	1	-	0	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	exon	4303174	4303239	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	intron	4303240	4303370	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	CDS	4303371	4303467	1	-	1	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	exon	4303371	4303467	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	intron	4303468	4303602	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	CDS	4303603	4303793	1	-	0	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	exon	4303603	4303793	.	-	.	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
Ledus.S1	AUGUSTUS	start_codon	4303791	4303793	.	-	0	transcript_id "Ledus.S1G029400.t1"; gene_id "Ledus.S1G029400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9893.t1 is derived from g10923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10991553	10999830	.	+	.	Ledus.S3G137000
Ledus.S3	AUGUSTUS	transcript	10991553	10999830	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	start_codon	10991553	10991555	.	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10991553	10991768	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10991553	10991768	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10991769	10991853	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10991854	10991952	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10991854	10991952	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10991953	10992146	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10992147	10992371	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10992147	10992371	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10992372	10992544	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10992545	10992655	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10992545	10992655	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10992656	10992838	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10992839	10992922	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10992839	10992922	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10992923	10993445	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10993446	10993505	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10993446	10993505	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10993506	10993670	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10993671	10993799	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10993671	10993799	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10993800	10993979	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10993980	10994041	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10993980	10994041	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10994042	10994253	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10994254	10994310	0.99	+	1	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10994254	10994310	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10994311	10994421	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10994422	10994548	1	+	1	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10994422	10994548	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10994549	10994632	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10994633	10994773	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10994633	10994773	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10994774	10995064	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10995065	10995151	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10995065	10995151	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10995152	10995638	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10995639	10995752	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10995639	10995752	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10995753	10995908	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10995909	10995988	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10995909	10995988	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10995989	10996335	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10996336	10996471	1	+	1	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10996336	10996471	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10996472	10996637	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10996638	10996787	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10996638	10996787	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10996788	10996987	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10996988	10997073	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10996988	10997073	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10997074	10997272	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10997273	10997454	1	+	1	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10997273	10997454	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10997455	10997623	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10997624	10997716	1	+	2	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10997624	10997716	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10997717	10997927	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10997928	10998115	1	+	2	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10997928	10998115	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10998116	10998588	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10998589	10998700	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10998589	10998700	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10998701	10999103	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10999104	10999255	1	+	2	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10999104	10999255	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10999256	10999381	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10999382	10999498	1	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10999382	10999498	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	intron	10999499	10999605	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	CDS	10999606	10999830	0.97	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	exon	10999606	10999830	.	+	.	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
Ledus.S3	AUGUSTUS	stop_codon	10999831	10999833	.	+	0	transcript_id "Ledus.S3G137000.t1"; gene_id "Ledus.S3G137000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12769.t1 is derived from g6391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14380460	14385165	.	-	.	Ledus.S4G192500
Ledus.S4	AUGUSTUS	transcript	14380460	14385165	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	stop_codon	14380457	14380459	.	-	0	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	CDS	14380460	14380524	0.74	-	2	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	exon	14380460	14380524	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	intron	14380525	14380932	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	CDS	14380933	14381251	0.82	-	0	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	exon	14380933	14381251	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	intron	14381252	14381522	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	CDS	14381523	14381604	1	-	1	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	exon	14381523	14381604	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	intron	14381605	14382433	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	CDS	14382434	14382564	1	-	0	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	exon	14382434	14382564	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	intron	14382565	14382727	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	CDS	14382728	14382826	1	-	0	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	exon	14382728	14382826	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	intron	14382827	14382923	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	CDS	14382924	14383079	1	-	0	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	exon	14382924	14383079	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	intron	14383080	14383234	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	CDS	14383235	14383309	1	-	0	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	exon	14383235	14383309	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	intron	14383310	14383529	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	CDS	14383530	14383712	1	-	0	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	exon	14383530	14383712	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	intron	14383713	14383855	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	CDS	14383856	14384006	1	-	1	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	exon	14383856	14384006	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	intron	14384007	14384890	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	CDS	14384891	14385165	0.31	-	0	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	exon	14384891	14385165	.	-	.	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
Ledus.S4	AUGUSTUS	start_codon	14385163	14385165	.	-	0	transcript_id "Ledus.S4G192500.t1"; gene_id "Ledus.S4G192500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9495.t1 is derived from g10525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7435361	7439603	.	-	.	Ledus.S3G097200
Ledus.S3	AUGUSTUS	transcript	7435361	7439603	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	stop_codon	7435358	7435360	.	-	0	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	CDS	7435361	7435447	0.95	-	0	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	exon	7435361	7435447	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	intron	7435448	7435534	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	CDS	7435535	7435593	1	-	2	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	exon	7435535	7435593	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	intron	7435594	7435705	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	CDS	7435706	7435770	1	-	1	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	exon	7435706	7435770	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	intron	7435771	7435945	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	CDS	7435946	7435998	1	-	0	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	exon	7435946	7435998	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	intron	7435999	7436151	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	CDS	7436152	7436235	1	-	0	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	exon	7436152	7436235	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	intron	7436236	7436397	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	CDS	7436398	7436450	1	-	2	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	exon	7436398	7436450	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	intron	7436451	7436760	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	CDS	7436761	7436838	1	-	2	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	exon	7436761	7436838	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	intron	7436839	7437023	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	CDS	7437024	7437090	1	-	0	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	exon	7437024	7437090	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	intron	7437091	7437483	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	CDS	7437484	7437789	0.93	-	0	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	exon	7437484	7437789	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	intron	7437790	7437864	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	CDS	7437865	7437932	0.8	-	2	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	exon	7437865	7437932	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	intron	7437933	7438040	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	CDS	7438041	7438109	0.48	-	2	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	exon	7438041	7438109	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	intron	7438110	7438225	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	CDS	7438226	7439603	0.77	-	0	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	exon	7438226	7439603	.	-	.	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
Ledus.S3	AUGUSTUS	start_codon	7439601	7439603	.	-	0	transcript_id "Ledus.S3G097200.t1"; gene_id "Ledus.S3G097200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8253.t1 is derived from g12924.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10166326	10166768	.	+	.	Ledus.S5G103100
Ledus.S5	AUGUSTUS	transcript	10166326	10166768	.	+	.	transcript_id "Ledus.S5G103100.t1"; gene_id "Ledus.S5G103100"
Ledus.S5	AUGUSTUS	start_codon	10166326	10166328	.	+	0	transcript_id "Ledus.S5G103100.t1"; gene_id "Ledus.S5G103100"
Ledus.S5	AUGUSTUS	CDS	10166326	10166365	0.98	+	0	transcript_id "Ledus.S5G103100.t1"; gene_id "Ledus.S5G103100"
Ledus.S5	AUGUSTUS	exon	10166326	10166365	.	+	.	transcript_id "Ledus.S5G103100.t1"; gene_id "Ledus.S5G103100"
Ledus.S5	AUGUSTUS	intron	10166366	10166439	.	+	.	transcript_id "Ledus.S5G103100.t1"; gene_id "Ledus.S5G103100"
Ledus.S5	AUGUSTUS	CDS	10166440	10166768	1	+	2	transcript_id "Ledus.S5G103100.t1"; gene_id "Ledus.S5G103100"
Ledus.S5	AUGUSTUS	exon	10166440	10166768	.	+	.	transcript_id "Ledus.S5G103100.t1"; gene_id "Ledus.S5G103100"
Ledus.S5	AUGUSTUS	stop_codon	10166769	10166771	.	+	0	transcript_id "Ledus.S5G103100.t1"; gene_id "Ledus.S5G103100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6518.t1 is derived from g3961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31838697	31839604	.	-	.	Ledus.S1G393900
Ledus.S1	AUGUSTUS	transcript	31838697	31839604	.	-	.	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	stop_codon	31838694	31838696	.	-	0	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	CDS	31838697	31838882	0.73	-	0	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	exon	31838697	31838882	.	-	.	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	intron	31838883	31839045	.	-	.	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	CDS	31839046	31839183	0.66	-	0	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	exon	31839046	31839183	.	-	.	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	intron	31839184	31839357	.	-	.	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	CDS	31839358	31839376	0.93	-	1	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	exon	31839358	31839376	.	-	.	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	intron	31839377	31839470	.	-	.	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	CDS	31839471	31839604	0.96	-	0	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	exon	31839471	31839604	.	-	.	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
Ledus.S1	AUGUSTUS	start_codon	31839602	31839604	.	-	0	transcript_id "Ledus.S1G393900.t1"; gene_id "Ledus.S1G393900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10691.t1 is derived from g11721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17123069	17127994	.	+	.	Ledus.S3G216800
Ledus.S3	AUGUSTUS	transcript	17123069	17127994	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	start_codon	17123069	17123071	.	+	0	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17123069	17123240	1	+	0	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17123069	17123240	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17123241	17123415	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17123416	17123607	1	+	2	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17123416	17123607	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17123608	17123688	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17123689	17123844	1	+	2	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17123689	17123844	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17123845	17123974	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17123975	17124268	1	+	2	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17123975	17124268	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17124269	17124364	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17124365	17124582	1	+	2	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17124365	17124582	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17124583	17124722	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17124723	17124797	1	+	0	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17124723	17124797	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17124798	17124956	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17124957	17125023	1	+	0	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17124957	17125023	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17125024	17125117	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17125118	17125443	0.86	+	2	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17125118	17125443	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17125444	17125546	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17125547	17125780	0.63	+	0	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17125547	17125780	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17125781	17125891	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17125892	17126079	0.69	+	0	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17125892	17126079	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17126080	17126257	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17126258	17126402	1	+	1	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17126258	17126402	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17126403	17126497	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17126498	17126606	0.92	+	0	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17126498	17126606	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17126607	17126709	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17126710	17126812	0.98	+	2	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17126710	17126812	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17126813	17126910	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17126911	17127115	1	+	1	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17126911	17127115	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17127116	17127210	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17127211	17127309	1	+	0	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17127211	17127309	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17127310	17127449	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17127450	17127508	0.95	+	0	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17127450	17127508	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17127509	17127631	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17127632	17127737	0.95	+	1	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17127632	17127737	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	intron	17127738	17127832	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	CDS	17127833	17127994	0.93	+	0	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	exon	17127833	17127994	.	+	.	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
Ledus.S3	AUGUSTUS	stop_codon	17127995	17127997	.	+	0	transcript_id "Ledus.S3G216800.t1"; gene_id "Ledus.S3G216800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10547.t1 is derived from g11577.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16053386	16058357	.	-	.	Ledus.S3G202400
Ledus.S3	AUGUSTUS	transcript	16053386	16058357	.	-	.	transcript_id "Ledus.S3G202400.t1"; gene_id "Ledus.S3G202400"
Ledus.S3	AUGUSTUS	stop_codon	16053383	16053385	.	-	0	transcript_id "Ledus.S3G202400.t1"; gene_id "Ledus.S3G202400"
Ledus.S3	AUGUSTUS	CDS	16053386	16057963	0.54	-	0	transcript_id "Ledus.S3G202400.t1"; gene_id "Ledus.S3G202400"
Ledus.S3	AUGUSTUS	exon	16053386	16057963	.	-	.	transcript_id "Ledus.S3G202400.t1"; gene_id "Ledus.S3G202400"
Ledus.S3	AUGUSTUS	intron	16057964	16058201	.	-	.	transcript_id "Ledus.S3G202400.t1"; gene_id "Ledus.S3G202400"
Ledus.S3	AUGUSTUS	CDS	16058202	16058357	0.82	-	0	transcript_id "Ledus.S3G202400.t1"; gene_id "Ledus.S3G202400"
Ledus.S3	AUGUSTUS	exon	16058202	16058357	.	-	.	transcript_id "Ledus.S3G202400.t1"; gene_id "Ledus.S3G202400"
Ledus.S3	AUGUSTUS	start_codon	16058355	16058357	.	-	0	transcript_id "Ledus.S3G202400.t1"; gene_id "Ledus.S3G202400"
Ledus.S3	AUGUSTUS	transcript	16053386	16056745	.	-	.	transcript_id "Ledus.S3G202400.t2"; gene_id "Ledus.S3G202400"
Ledus.S3	AUGUSTUS	stop_codon	16053383	16053385	.	-	0	transcript_id "Ledus.S3G202400.t2"; gene_id "Ledus.S3G202400"
Ledus.S3	AUGUSTUS	CDS	16053386	16056745	0.59	-	0	transcript_id "Ledus.S3G202400.t2"; gene_id "Ledus.S3G202400"
Ledus.S3	AUGUSTUS	exon	16053386	16056745	.	-	.	transcript_id "Ledus.S3G202400.t2"; gene_id "Ledus.S3G202400"
Ledus.S3	AUGUSTUS	start_codon	16056743	16056745	.	-	0	transcript_id "Ledus.S3G202400.t2"; gene_id "Ledus.S3G202400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg187.t1 is derived from g7048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	615782	617502	.	+	.	Ledus.S2G006900
Ledus.S2	AUGUSTUS	transcript	615782	617502	.	+	.	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	start_codon	615782	615784	.	+	0	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	CDS	615782	615896	0.95	+	0	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	exon	615782	615896	.	+	.	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	intron	615897	615979	.	+	.	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	CDS	615980	616515	1	+	2	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	exon	615980	616515	.	+	.	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	intron	616516	616593	.	+	.	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	CDS	616594	616824	1	+	0	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	exon	616594	616824	.	+	.	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	intron	616825	616906	.	+	.	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	CDS	616907	617179	1	+	0	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	exon	616907	617179	.	+	.	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	intron	617180	617271	.	+	.	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	CDS	617272	617502	1	+	0	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	exon	617272	617502	.	+	.	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
Ledus.S2	AUGUSTUS	stop_codon	617503	617505	.	+	0	transcript_id "Ledus.S2G006900.t1"; gene_id "Ledus.S2G006900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg478.t1 is derived from g7339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2807567	2809134	.	-	.	Ledus.S2G036000
Ledus.S2	AUGUSTUS	transcript	2807567	2809134	.	-	.	transcript_id "Ledus.S2G036000.t1"; gene_id "Ledus.S2G036000"
Ledus.S2	AUGUSTUS	stop_codon	2807564	2807566	.	-	0	transcript_id "Ledus.S2G036000.t1"; gene_id "Ledus.S2G036000"
Ledus.S2	AUGUSTUS	CDS	2807567	2808463	0.97	-	0	transcript_id "Ledus.S2G036000.t1"; gene_id "Ledus.S2G036000"
Ledus.S2	AUGUSTUS	exon	2807567	2808463	.	-	.	transcript_id "Ledus.S2G036000.t1"; gene_id "Ledus.S2G036000"
Ledus.S2	AUGUSTUS	intron	2808464	2808556	.	-	.	transcript_id "Ledus.S2G036000.t1"; gene_id "Ledus.S2G036000"
Ledus.S2	AUGUSTUS	CDS	2808557	2808682	1	-	0	transcript_id "Ledus.S2G036000.t1"; gene_id "Ledus.S2G036000"
Ledus.S2	AUGUSTUS	exon	2808557	2808682	.	-	.	transcript_id "Ledus.S2G036000.t1"; gene_id "Ledus.S2G036000"
Ledus.S2	AUGUSTUS	intron	2808683	2808762	.	-	.	transcript_id "Ledus.S2G036000.t1"; gene_id "Ledus.S2G036000"
Ledus.S2	AUGUSTUS	CDS	2808763	2809134	1	-	0	transcript_id "Ledus.S2G036000.t1"; gene_id "Ledus.S2G036000"
Ledus.S2	AUGUSTUS	exon	2808763	2809134	.	-	.	transcript_id "Ledus.S2G036000.t1"; gene_id "Ledus.S2G036000"
Ledus.S2	AUGUSTUS	start_codon	2809132	2809134	.	-	0	transcript_id "Ledus.S2G036000.t1"; gene_id "Ledus.S2G036000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8740.t1 is derived from g9770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1714911	1716077	.	+	.	Ledus.S3G021700
Ledus.S3	AUGUSTUS	transcript	1714911	1716077	.	+	.	transcript_id "Ledus.S3G021700.t1"; gene_id "Ledus.S3G021700"
Ledus.S3	AUGUSTUS	start_codon	1714911	1714913	.	+	0	transcript_id "Ledus.S3G021700.t1"; gene_id "Ledus.S3G021700"
Ledus.S3	AUGUSTUS	CDS	1714911	1716077	1	+	0	transcript_id "Ledus.S3G021700.t1"; gene_id "Ledus.S3G021700"
Ledus.S3	AUGUSTUS	exon	1714911	1716077	.	+	.	transcript_id "Ledus.S3G021700.t1"; gene_id "Ledus.S3G021700"
Ledus.S3	AUGUSTUS	stop_codon	1716078	1716080	.	+	0	transcript_id "Ledus.S3G021700.t1"; gene_id "Ledus.S3G021700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9011.t1 is derived from g10041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3859190	3869273	.	-	.	Ledus.S3G048800
Ledus.S3	AUGUSTUS	transcript	3859190	3869273	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	stop_codon	3859187	3859189	.	-	0	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3859190	3859517	0.94	-	1	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3859190	3859517	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3859518	3859604	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3859605	3859698	0.93	-	2	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3859605	3859698	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3859699	3859822	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3859823	3860225	0.9	-	0	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3859823	3860225	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3860226	3860371	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3860372	3860728	0.73	-	0	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3860372	3860728	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3860729	3860807	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3860808	3860969	0.97	-	0	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3860808	3860969	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3860970	3861095	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3861096	3861299	0.82	-	0	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3861096	3861299	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3861300	3861439	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3861440	3861643	0.84	-	0	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3861440	3861643	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3861644	3861763	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3861764	3861979	0.94	-	0	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3861764	3861979	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3861980	3862122	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3862123	3865290	0.62	-	0	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3862123	3865290	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3865291	3865739	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3865740	3865805	0.81	-	0	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3865740	3865805	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3865806	3865892	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3865893	3866029	1	-	2	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3865893	3866029	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3866030	3866158	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3866159	3866726	0.6	-	0	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3866159	3866726	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3866727	3867002	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3867003	3867801	0.96	-	1	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3867003	3867801	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3867802	3867889	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3867890	3868835	0.85	-	2	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3867890	3868835	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	intron	3868836	3868948	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	CDS	3868949	3869273	0.59	-	0	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	exon	3868949	3869273	.	-	.	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
Ledus.S3	AUGUSTUS	start_codon	3869271	3869273	.	-	0	transcript_id "Ledus.S3G048800.t1"; gene_id "Ledus.S3G048800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11040.t1 is derived from g4658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1364168	1364737	.	-	.	Ledus.S4G019600
Ledus.S4	AUGUSTUS	transcript	1364168	1364737	.	-	.	transcript_id "Ledus.S4G019600.t1"; gene_id "Ledus.S4G019600"
Ledus.S4	AUGUSTUS	stop_codon	1364165	1364167	.	-	0	transcript_id "Ledus.S4G019600.t1"; gene_id "Ledus.S4G019600"
Ledus.S4	AUGUSTUS	CDS	1364168	1364737	0.42	-	0	transcript_id "Ledus.S4G019600.t1"; gene_id "Ledus.S4G019600"
Ledus.S4	AUGUSTUS	exon	1364168	1364737	.	-	.	transcript_id "Ledus.S4G019600.t1"; gene_id "Ledus.S4G019600"
Ledus.S4	AUGUSTUS	start_codon	1364735	1364737	.	-	0	transcript_id "Ledus.S4G019600.t1"; gene_id "Ledus.S4G019600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6257.t1 is derived from g3700.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29918040	29919452	.	-	.	Ledus.S1G367800
Ledus.S1	AUGUSTUS	transcript	29918040	29919452	.	-	.	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	stop_codon	29918037	29918039	.	-	0	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	CDS	29918040	29918047	1	-	2	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	exon	29918040	29918047	.	-	.	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	intron	29918048	29918303	.	-	.	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	CDS	29918304	29918394	1	-	0	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	exon	29918304	29918394	.	-	.	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	intron	29918395	29918511	.	-	.	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	CDS	29918512	29918652	1	-	0	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	exon	29918512	29918652	.	-	.	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	intron	29918653	29918735	.	-	.	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	CDS	29918736	29919031	1	-	2	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	exon	29918736	29919031	.	-	.	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	intron	29919032	29919115	.	-	.	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	CDS	29919116	29919452	1	-	0	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	exon	29919116	29919452	.	-	.	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
Ledus.S1	AUGUSTUS	start_codon	29919450	29919452	.	-	0	transcript_id "Ledus.S1G367800.t1"; gene_id "Ledus.S1G367800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3119.t1 is derived from g554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6139249	6140733	.	+	.	Ledus.S1G054000
Ledus.S1	AUGUSTUS	transcript	6139249	6140733	.	+	.	transcript_id "Ledus.S1G054000.t1"; gene_id "Ledus.S1G054000"
Ledus.S1	AUGUSTUS	start_codon	6139249	6139251	.	+	0	transcript_id "Ledus.S1G054000.t1"; gene_id "Ledus.S1G054000"
Ledus.S1	AUGUSTUS	CDS	6139249	6140733	0.28	+	0	transcript_id "Ledus.S1G054000.t1"; gene_id "Ledus.S1G054000"
Ledus.S1	AUGUSTUS	exon	6139249	6140733	.	+	.	transcript_id "Ledus.S1G054000.t1"; gene_id "Ledus.S1G054000"
Ledus.S1	AUGUSTUS	stop_codon	6140734	6140736	.	+	0	transcript_id "Ledus.S1G054000.t1"; gene_id "Ledus.S1G054000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7720.t1 is derived from g12391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5555906	5556964	.	+	.	Ledus.S5G049800
Ledus.S5	AUGUSTUS	transcript	5555906	5556964	.	+	.	transcript_id "Ledus.S5G049800.t1"; gene_id "Ledus.S5G049800"
Ledus.S5	AUGUSTUS	start_codon	5555906	5555908	.	+	0	transcript_id "Ledus.S5G049800.t1"; gene_id "Ledus.S5G049800"
Ledus.S5	AUGUSTUS	CDS	5555906	5556964	0.57	+	0	transcript_id "Ledus.S5G049800.t1"; gene_id "Ledus.S5G049800"
Ledus.S5	AUGUSTUS	exon	5555906	5556964	.	+	.	transcript_id "Ledus.S5G049800.t1"; gene_id "Ledus.S5G049800"
Ledus.S5	AUGUSTUS	stop_codon	5556965	5556967	.	+	0	transcript_id "Ledus.S5G049800.t1"; gene_id "Ledus.S5G049800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg851.t1 is derived from g7712.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5674063	5675972	.	+	.	Ledus.S2G073300
Ledus.S2	AUGUSTUS	transcript	5674063	5675972	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	start_codon	5674063	5674065	.	+	0	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5674063	5674111	1	+	0	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5674063	5674111	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5674112	5674257	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5674258	5674357	1	+	2	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5674258	5674357	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5674358	5674559	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5674560	5674735	1	+	1	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5674560	5674735	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5674736	5674825	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5674826	5674947	0.95	+	2	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5674826	5674947	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5674948	5675004	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5675005	5675019	0.94	+	0	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5675005	5675019	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5675020	5675163	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5675164	5675229	0.75	+	0	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5675164	5675229	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5675230	5675343	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5675344	5675428	0.72	+	0	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5675344	5675428	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5675429	5675583	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5675584	5675664	1	+	2	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5675584	5675664	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5675665	5675802	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5675803	5675972	0.99	+	2	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5675803	5675972	.	+	.	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	stop_codon	5675973	5675975	.	+	0	transcript_id "Ledus.S2G073300.t1"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	transcript	5674063	5675972	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	start_codon	5674063	5674065	.	+	0	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5674063	5674111	1	+	0	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5674063	5674111	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5674112	5674257	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5674258	5674357	1	+	2	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5674258	5674357	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5674358	5674559	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5674560	5674735	1	+	1	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5674560	5674735	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5674736	5674825	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5674826	5674888	0.68	+	2	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5674826	5674888	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5674889	5675019	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5675020	5675066	0.48	+	2	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5675020	5675066	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5675067	5675163	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5675164	5675229	0.79	+	0	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5675164	5675229	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5675230	5675343	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5675344	5675428	0.72	+	0	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5675344	5675428	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5675429	5675583	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5675584	5675664	1	+	2	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5675584	5675664	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	intron	5675665	5675802	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	CDS	5675803	5675972	1	+	2	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	exon	5675803	5675972	.	+	.	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
Ledus.S2	AUGUSTUS	stop_codon	5675973	5675975	.	+	0	transcript_id "Ledus.S2G073300.t2"; gene_id "Ledus.S2G073300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9913.t1 is derived from g10943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11126650	11136243	.	+	.	Ledus.S3G139000
Ledus.S3	AUGUSTUS	transcript	11126650	11136243	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	start_codon	11126650	11126652	.	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11126650	11126991	0.48	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11126650	11126991	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11126992	11127071	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11127072	11127191	1	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11127072	11127191	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11127192	11127275	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11127276	11127392	1	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11127276	11127392	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11127393	11127467	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11127468	11127620	1	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11127468	11127620	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11127621	11127714	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11127715	11127815	1	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11127715	11127815	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11127816	11127915	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11127916	11128012	0.91	+	1	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11127916	11128012	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11128013	11128114	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11128115	11128224	0.91	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11128115	11128224	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11128225	11128760	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11128761	11128864	1	+	1	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11128761	11128864	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11128865	11128955	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11128956	11129135	1	+	2	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11128956	11129135	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11129136	11129299	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11129300	11129643	1	+	2	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11129300	11129643	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11129644	11129825	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11129826	11129896	1	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11129826	11129896	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11129897	11130034	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11130035	11130504	0.83	+	1	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11130035	11130504	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11130505	11130628	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11130629	11131501	0.92	+	2	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11130629	11131501	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11131502	11131615	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11131616	11131770	1	+	2	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11131616	11131770	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11131771	11131870	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11131871	11132032	1	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11131871	11132032	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11132033	11132252	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11132253	11133863	1	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11132253	11133863	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11133864	11133957	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11133958	11134176	1	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11133958	11134176	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11134177	11134357	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11134358	11134626	0.99	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11134358	11134626	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11134627	11134739	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11134740	11135045	0.98	+	1	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11134740	11135045	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11135046	11135142	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11135143	11135410	1	+	1	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11135143	11135410	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11135411	11135636	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11135637	11135894	1	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11135637	11135894	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	intron	11135895	11136000	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	CDS	11136001	11136243	0.99	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	exon	11136001	11136243	.	+	.	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
Ledus.S3	AUGUSTUS	stop_codon	11136244	11136246	.	+	0	transcript_id "Ledus.S3G139000.t1"; gene_id "Ledus.S3G139000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6460.t1 is derived from g3903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31369426	31370121	.	+	.	Ledus.S1G388100
Ledus.S1	AUGUSTUS	transcript	31369426	31370121	.	+	.	transcript_id "Ledus.S1G388100.t1"; gene_id "Ledus.S1G388100"
Ledus.S1	AUGUSTUS	start_codon	31369426	31369428	.	+	0	transcript_id "Ledus.S1G388100.t1"; gene_id "Ledus.S1G388100"
Ledus.S1	AUGUSTUS	CDS	31369426	31370121	0.73	+	0	transcript_id "Ledus.S1G388100.t1"; gene_id "Ledus.S1G388100"
Ledus.S1	AUGUSTUS	exon	31369426	31370121	.	+	.	transcript_id "Ledus.S1G388100.t1"; gene_id "Ledus.S1G388100"
Ledus.S1	AUGUSTUS	stop_codon	31370122	31370124	.	+	0	transcript_id "Ledus.S1G388100.t1"; gene_id "Ledus.S1G388100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10654.t1 is derived from g11684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16876771	16879438	.	+	.	Ledus.S3G213100
Ledus.S3	AUGUSTUS	transcript	16876771	16879438	.	+	.	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	start_codon	16876771	16876773	.	+	0	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	CDS	16876771	16876891	0.93	+	0	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	exon	16876771	16876891	.	+	.	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	intron	16876892	16877046	.	+	.	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	CDS	16877047	16877252	0.87	+	2	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	exon	16877047	16877252	.	+	.	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	intron	16877253	16877374	.	+	.	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	CDS	16877375	16877580	1	+	0	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	exon	16877375	16877580	.	+	.	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	intron	16877581	16877763	.	+	.	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	CDS	16877764	16877863	1	+	1	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	exon	16877764	16877863	.	+	.	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	intron	16877864	16878037	.	+	.	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	CDS	16878038	16879438	0.98	+	0	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	exon	16878038	16879438	.	+	.	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
Ledus.S3	AUGUSTUS	stop_codon	16879439	16879441	.	+	0	transcript_id "Ledus.S3G213100.t1"; gene_id "Ledus.S3G213100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10625.t1 is derived from g11655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16562726	16563580	.	-	.	Ledus.S3G210200
Ledus.S3	AUGUSTUS	transcript	16562726	16563580	.	-	.	transcript_id "Ledus.S3G210200.t1"; gene_id "Ledus.S3G210200"
Ledus.S3	AUGUSTUS	stop_codon	16562723	16562725	.	-	0	transcript_id "Ledus.S3G210200.t1"; gene_id "Ledus.S3G210200"
Ledus.S3	AUGUSTUS	CDS	16562726	16563580	0.85	-	0	transcript_id "Ledus.S3G210200.t1"; gene_id "Ledus.S3G210200"
Ledus.S3	AUGUSTUS	exon	16562726	16563580	.	-	.	transcript_id "Ledus.S3G210200.t1"; gene_id "Ledus.S3G210200"
Ledus.S3	AUGUSTUS	start_codon	16563578	16563580	.	-	0	transcript_id "Ledus.S3G210200.t1"; gene_id "Ledus.S3G210200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg784.t1 is derived from g7645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5076678	5079162	.	-	.	Ledus.S2G066600
Ledus.S2	AUGUSTUS	transcript	5076678	5079162	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	stop_codon	5076675	5076677	.	-	0	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	CDS	5076678	5076833	1	-	0	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	exon	5076678	5076833	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	intron	5076834	5076934	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	CDS	5076935	5077073	1	-	1	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	exon	5076935	5077073	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	intron	5077074	5077156	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	CDS	5077157	5077278	1	-	0	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	exon	5077157	5077278	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	intron	5077279	5077370	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	CDS	5077371	5077595	1	-	0	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	exon	5077371	5077595	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	intron	5077596	5077678	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	CDS	5077679	5077740	1	-	2	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	exon	5077679	5077740	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	intron	5077741	5077820	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	CDS	5077821	5077947	1	-	0	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	exon	5077821	5077947	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	intron	5077948	5078065	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	CDS	5078066	5078344	1	-	0	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	exon	5078066	5078344	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	intron	5078345	5078439	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	CDS	5078440	5079162	0.99	-	0	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	exon	5078440	5079162	.	-	.	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
Ledus.S2	AUGUSTUS	start_codon	5079160	5079162	.	-	0	transcript_id "Ledus.S2G066600.t1"; gene_id "Ledus.S2G066600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11507.t1 is derived from g5125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4962284	4964128	.	-	.	Ledus.S4G066300
Ledus.S4	AUGUSTUS	transcript	4962284	4964128	.	-	.	transcript_id "Ledus.S4G066300.t1"; gene_id "Ledus.S4G066300"
Ledus.S4	AUGUSTUS	stop_codon	4962281	4962283	.	-	0	transcript_id "Ledus.S4G066300.t1"; gene_id "Ledus.S4G066300"
Ledus.S4	AUGUSTUS	CDS	4962284	4964128	0.92	-	0	transcript_id "Ledus.S4G066300.t1"; gene_id "Ledus.S4G066300"
Ledus.S4	AUGUSTUS	exon	4962284	4964128	.	-	.	transcript_id "Ledus.S4G066300.t1"; gene_id "Ledus.S4G066300"
Ledus.S4	AUGUSTUS	start_codon	4964126	4964128	.	-	0	transcript_id "Ledus.S4G066300.t1"; gene_id "Ledus.S4G066300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6026.t1 is derived from g3469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28480111	28480545	.	+	.	Ledus.S1G344700
Ledus.S1	AUGUSTUS	transcript	28480111	28480545	.	+	.	transcript_id "Ledus.S1G344700.t1"; gene_id "Ledus.S1G344700"
Ledus.S1	AUGUSTUS	start_codon	28480111	28480113	.	+	0	transcript_id "Ledus.S1G344700.t1"; gene_id "Ledus.S1G344700"
Ledus.S1	AUGUSTUS	CDS	28480111	28480545	0.99	+	0	transcript_id "Ledus.S1G344700.t1"; gene_id "Ledus.S1G344700"
Ledus.S1	AUGUSTUS	exon	28480111	28480545	.	+	.	transcript_id "Ledus.S1G344700.t1"; gene_id "Ledus.S1G344700"
Ledus.S1	AUGUSTUS	stop_codon	28480546	28480548	.	+	0	transcript_id "Ledus.S1G344700.t1"; gene_id "Ledus.S1G344700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5050.t1 is derived from g2489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21312537	21316206	.	-	.	Ledus.S1G247100
Ledus.S1	AUGUSTUS	transcript	21312537	21316206	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	stop_codon	21312534	21312536	.	-	0	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21312537	21312583	1	-	2	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21312537	21312583	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	intron	21312584	21312658	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21312659	21313522	1	-	2	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21312659	21313522	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	intron	21313523	21313643	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21313644	21313891	1	-	1	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21313644	21313891	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	intron	21313892	21314020	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21314021	21314154	1	-	0	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21314021	21314154	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	intron	21314155	21314253	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21314254	21314265	1	-	0	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21314254	21314265	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	intron	21314266	21314309	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21314310	21314366	1	-	0	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21314310	21314366	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	intron	21314367	21314462	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21314463	21314558	1	-	0	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21314463	21314558	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	intron	21314559	21314674	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21314675	21314833	0.78	-	0	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21314675	21314833	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	intron	21314834	21314948	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21314949	21314997	1	-	1	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21314949	21314997	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	intron	21314998	21315268	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21315269	21315324	1	-	0	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21315269	21315324	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	intron	21315325	21315424	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21315425	21315504	1	-	2	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21315425	21315504	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	intron	21315505	21315602	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21315603	21315688	0.98	-	1	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21315603	21315688	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	intron	21315689	21315796	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	CDS	21315797	21316206	0.96	-	0	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	exon	21315797	21316206	.	-	.	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
Ledus.S1	AUGUSTUS	start_codon	21316204	21316206	.	-	0	transcript_id "Ledus.S1G247100.t1"; gene_id "Ledus.S1G247100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg865.t1 is derived from g7726.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5791261	5791551	.	+	.	Ledus.S2G074700
Ledus.S2	AUGUSTUS	transcript	5791261	5791551	.	+	.	transcript_id "Ledus.S2G074700.t1"; gene_id "Ledus.S2G074700"
Ledus.S2	AUGUSTUS	start_codon	5791261	5791263	.	+	0	transcript_id "Ledus.S2G074700.t1"; gene_id "Ledus.S2G074700"
Ledus.S2	AUGUSTUS	CDS	5791261	5791551	0.9	+	0	transcript_id "Ledus.S2G074700.t1"; gene_id "Ledus.S2G074700"
Ledus.S2	AUGUSTUS	exon	5791261	5791551	.	+	.	transcript_id "Ledus.S2G074700.t1"; gene_id "Ledus.S2G074700"
Ledus.S2	AUGUSTUS	stop_codon	5791552	5791554	.	+	0	transcript_id "Ledus.S2G074700.t1"; gene_id "Ledus.S2G074700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg149.t1 is derived from g7010.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	282202	282627	.	+	.	Ledus.S2G003100
Ledus.S2	AUGUSTUS	transcript	282202	282627	.	+	.	transcript_id "Ledus.S2G003100.t1"; gene_id "Ledus.S2G003100"
Ledus.S2	AUGUSTUS	start_codon	282202	282204	.	+	0	transcript_id "Ledus.S2G003100.t1"; gene_id "Ledus.S2G003100"
Ledus.S2	AUGUSTUS	CDS	282202	282627	0.53	+	0	transcript_id "Ledus.S2G003100.t1"; gene_id "Ledus.S2G003100"
Ledus.S2	AUGUSTUS	exon	282202	282627	.	+	.	transcript_id "Ledus.S2G003100.t1"; gene_id "Ledus.S2G003100"
Ledus.S2	AUGUSTUS	stop_codon	282628	282630	.	+	0	transcript_id "Ledus.S2G003100.t1"; gene_id "Ledus.S2G003100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4761.t1 is derived from g2199.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19636249	19639663	.	-	.	Ledus.S1G218200
Ledus.S1	AUGUSTUS	transcript	19636249	19639663	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	stop_codon	19636246	19636248	.	-	0	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	CDS	19636249	19636326	0.66	-	0	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	exon	19636249	19636326	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	intron	19636327	19636413	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	CDS	19636414	19636460	1	-	2	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	exon	19636414	19636460	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	intron	19636461	19638132	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	CDS	19638133	19638220	1	-	0	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	exon	19638133	19638220	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	intron	19638221	19638309	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	CDS	19638310	19638417	1	-	0	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	exon	19638310	19638417	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	intron	19638418	19638512	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	CDS	19638513	19638557	1	-	0	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	exon	19638513	19638557	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	intron	19638558	19638640	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	CDS	19638641	19638705	1	-	2	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	exon	19638641	19638705	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	intron	19638706	19638791	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	CDS	19638792	19638897	1	-	0	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	exon	19638792	19638897	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	intron	19638898	19638979	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	CDS	19638980	19639021	1	-	0	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	exon	19638980	19639021	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	intron	19639022	19639132	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	CDS	19639133	19639210	1	-	0	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	exon	19639133	19639210	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	intron	19639211	19639303	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	CDS	19639304	19639663	0.76	-	0	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	exon	19639304	19639663	.	-	.	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
Ledus.S1	AUGUSTUS	start_codon	19639661	19639663	.	-	0	transcript_id "Ledus.S1G218200.t1"; gene_id "Ledus.S1G218200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6419.t1 is derived from g3862.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31158333	31160219	.	-	.	Ledus.S1G384000
Ledus.S1	AUGUSTUS	transcript	31158333	31160219	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	stop_codon	31158330	31158332	.	-	0	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	CDS	31158333	31158499	0.98	-	2	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	exon	31158333	31158499	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	intron	31158500	31158586	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	CDS	31158587	31158740	1	-	0	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	exon	31158587	31158740	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	intron	31158741	31158839	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	CDS	31158840	31158938	1	-	0	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	exon	31158840	31158938	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	intron	31158939	31159023	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	CDS	31159024	31159237	1	-	1	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	exon	31159024	31159237	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	intron	31159238	31159363	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	CDS	31159364	31159566	1	-	0	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	exon	31159364	31159566	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	intron	31159567	31159664	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	CDS	31159665	31159741	1	-	2	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	exon	31159665	31159741	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	intron	31159742	31159824	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	CDS	31159825	31159900	1	-	0	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	exon	31159825	31159900	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	intron	31159901	31160042	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	CDS	31160043	31160219	0.99	-	0	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	exon	31160043	31160219	.	-	.	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
Ledus.S1	AUGUSTUS	start_codon	31160217	31160219	.	-	0	transcript_id "Ledus.S1G384000.t1"; gene_id "Ledus.S1G384000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4030.t1 is derived from g1466.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14262247	14263584	.	-	.	Ledus.S1G145100
Ledus.S1	AUGUSTUS	transcript	14262247	14263584	.	-	.	transcript_id "Ledus.S1G145100.t1"; gene_id "Ledus.S1G145100"
Ledus.S1	AUGUSTUS	stop_codon	14262244	14262246	.	-	0	transcript_id "Ledus.S1G145100.t1"; gene_id "Ledus.S1G145100"
Ledus.S1	AUGUSTUS	CDS	14262247	14263584	1	-	0	transcript_id "Ledus.S1G145100.t1"; gene_id "Ledus.S1G145100"
Ledus.S1	AUGUSTUS	exon	14262247	14263584	.	-	.	transcript_id "Ledus.S1G145100.t1"; gene_id "Ledus.S1G145100"
Ledus.S1	AUGUSTUS	start_codon	14263582	14263584	.	-	0	transcript_id "Ledus.S1G145100.t1"; gene_id "Ledus.S1G145100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7047.t1 is derived from g6578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1015700	1018088	.	+	.	Ledus.C7G010800
Ledus.C7	AUGUSTUS	transcript	1015700	1018088	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	start_codon	1015700	1015702	.	+	0	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	CDS	1015700	1015970	0.99	+	0	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	exon	1015700	1015970	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	intron	1015971	1016069	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	CDS	1016070	1016137	1	+	2	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	exon	1016070	1016137	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	intron	1016138	1016248	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	CDS	1016249	1016341	1	+	0	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	exon	1016249	1016341	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	intron	1016342	1016406	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	CDS	1016407	1016607	1	+	0	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	exon	1016407	1016607	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	intron	1016608	1016694	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	CDS	1016695	1016775	0.99	+	0	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	exon	1016695	1016775	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	intron	1016776	1016889	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	CDS	1016890	1016985	1	+	0	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	exon	1016890	1016985	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	intron	1016986	1017172	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	CDS	1017173	1017250	1	+	0	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	exon	1017173	1017250	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	intron	1017251	1017349	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	CDS	1017350	1017439	1	+	0	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	exon	1017350	1017439	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	intron	1017440	1017589	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	CDS	1017590	1017657	1	+	0	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	exon	1017590	1017657	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	intron	1017658	1017860	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	CDS	1017861	1017942	1	+	1	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	exon	1017861	1017942	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	intron	1017943	1018025	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	CDS	1018026	1018088	1	+	0	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	exon	1018026	1018088	.	+	.	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
Ledus.C7	AUGUSTUS	stop_codon	1018089	1018091	.	+	0	transcript_id "Ledus.C7G010800.t1"; gene_id "Ledus.C7G010800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7959.t1 is derived from g12630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8209776	8211035	.	-	.	Ledus.S5G073700
Ledus.S5	AUGUSTUS	transcript	8209776	8211035	.	-	.	transcript_id "Ledus.S5G073700.t1"; gene_id "Ledus.S5G073700"
Ledus.S5	AUGUSTUS	stop_codon	8209773	8209775	.	-	0	transcript_id "Ledus.S5G073700.t1"; gene_id "Ledus.S5G073700"
Ledus.S5	AUGUSTUS	CDS	8209776	8211035	0.95	-	0	transcript_id "Ledus.S5G073700.t1"; gene_id "Ledus.S5G073700"
Ledus.S5	AUGUSTUS	exon	8209776	8211035	.	-	.	transcript_id "Ledus.S5G073700.t1"; gene_id "Ledus.S5G073700"
Ledus.S5	AUGUSTUS	start_codon	8211033	8211035	.	-	0	transcript_id "Ledus.S5G073700.t1"; gene_id "Ledus.S5G073700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7921.t1 is derived from g12592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7849987	7850388	.	+	.	Ledus.S5G069900
Ledus.S5	AUGUSTUS	transcript	7849987	7850388	.	+	.	transcript_id "Ledus.S5G069900.t1"; gene_id "Ledus.S5G069900"
Ledus.S5	AUGUSTUS	start_codon	7849987	7849989	.	+	0	transcript_id "Ledus.S5G069900.t1"; gene_id "Ledus.S5G069900"
Ledus.S5	AUGUSTUS	CDS	7849987	7850388	0.35	+	0	transcript_id "Ledus.S5G069900.t1"; gene_id "Ledus.S5G069900"
Ledus.S5	AUGUSTUS	exon	7849987	7850388	.	+	.	transcript_id "Ledus.S5G069900.t1"; gene_id "Ledus.S5G069900"
Ledus.S5	AUGUSTUS	stop_codon	7850389	7850391	.	+	0	transcript_id "Ledus.S5G069900.t1"; gene_id "Ledus.S5G069900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2608.t1 is derived from g41.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	375457	376738	.	+	.	Ledus.S1G002900
Ledus.S1	AUGUSTUS	transcript	375457	376738	.	+	.	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	start_codon	375457	375459	.	+	0	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	CDS	375457	375669	1	+	0	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	exon	375457	375669	.	+	.	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	intron	375670	375756	.	+	.	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	CDS	375757	375960	1	+	0	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	exon	375757	375960	.	+	.	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	intron	375961	376037	.	+	.	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	CDS	376038	376307	1	+	0	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	exon	376038	376307	.	+	.	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	intron	376308	376399	.	+	.	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	CDS	376400	376738	1	+	0	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	exon	376400	376738	.	+	.	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
Ledus.S1	AUGUSTUS	stop_codon	376739	376741	.	+	0	transcript_id "Ledus.S1G002900.t1"; gene_id "Ledus.S1G002900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11404.t1 is derived from g5022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4019349	4020791	.	+	.	Ledus.S4G056000
Ledus.S4	AUGUSTUS	transcript	4019349	4020791	.	+	.	transcript_id "Ledus.S4G056000.t1"; gene_id "Ledus.S4G056000"
Ledus.S4	AUGUSTUS	start_codon	4019349	4019351	.	+	0	transcript_id "Ledus.S4G056000.t1"; gene_id "Ledus.S4G056000"
Ledus.S4	AUGUSTUS	CDS	4019349	4020791	1	+	0	transcript_id "Ledus.S4G056000.t1"; gene_id "Ledus.S4G056000"
Ledus.S4	AUGUSTUS	exon	4019349	4020791	.	+	.	transcript_id "Ledus.S4G056000.t1"; gene_id "Ledus.S4G056000"
Ledus.S4	AUGUSTUS	stop_codon	4020792	4020794	.	+	0	transcript_id "Ledus.S4G056000.t1"; gene_id "Ledus.S4G056000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9290.t1 is derived from g10320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5811714	5812591	.	+	.	Ledus.S3G076700
Ledus.S3	AUGUSTUS	transcript	5811714	5812591	.	+	.	transcript_id "Ledus.S3G076700.t1"; gene_id "Ledus.S3G076700"
Ledus.S3	AUGUSTUS	start_codon	5811714	5811716	.	+	0	transcript_id "Ledus.S3G076700.t1"; gene_id "Ledus.S3G076700"
Ledus.S3	AUGUSTUS	CDS	5811714	5811995	0.36	+	0	transcript_id "Ledus.S3G076700.t1"; gene_id "Ledus.S3G076700"
Ledus.S3	AUGUSTUS	exon	5811714	5811995	.	+	.	transcript_id "Ledus.S3G076700.t1"; gene_id "Ledus.S3G076700"
Ledus.S3	AUGUSTUS	intron	5811996	5812237	.	+	.	transcript_id "Ledus.S3G076700.t1"; gene_id "Ledus.S3G076700"
Ledus.S3	AUGUSTUS	CDS	5812238	5812591	0.79	+	0	transcript_id "Ledus.S3G076700.t1"; gene_id "Ledus.S3G076700"
Ledus.S3	AUGUSTUS	exon	5812238	5812591	.	+	.	transcript_id "Ledus.S3G076700.t1"; gene_id "Ledus.S3G076700"
Ledus.S3	AUGUSTUS	stop_codon	5812592	5812594	.	+	0	transcript_id "Ledus.S3G076700.t1"; gene_id "Ledus.S3G076700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11853.t1 is derived from g5472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7307163	7307932	.	+	.	Ledus.S4G100900
Ledus.S4	AUGUSTUS	transcript	7307163	7307932	.	+	.	transcript_id "Ledus.S4G100900.t1"; gene_id "Ledus.S4G100900"
Ledus.S4	AUGUSTUS	start_codon	7307163	7307165	.	+	0	transcript_id "Ledus.S4G100900.t1"; gene_id "Ledus.S4G100900"
Ledus.S4	AUGUSTUS	CDS	7307163	7307262	0.74	+	0	transcript_id "Ledus.S4G100900.t1"; gene_id "Ledus.S4G100900"
Ledus.S4	AUGUSTUS	exon	7307163	7307262	.	+	.	transcript_id "Ledus.S4G100900.t1"; gene_id "Ledus.S4G100900"
Ledus.S4	AUGUSTUS	intron	7307263	7307438	.	+	.	transcript_id "Ledus.S4G100900.t1"; gene_id "Ledus.S4G100900"
Ledus.S4	AUGUSTUS	CDS	7307439	7307496	0.79	+	2	transcript_id "Ledus.S4G100900.t1"; gene_id "Ledus.S4G100900"
Ledus.S4	AUGUSTUS	exon	7307439	7307496	.	+	.	transcript_id "Ledus.S4G100900.t1"; gene_id "Ledus.S4G100900"
Ledus.S4	AUGUSTUS	intron	7307497	7307592	.	+	.	transcript_id "Ledus.S4G100900.t1"; gene_id "Ledus.S4G100900"
Ledus.S4	AUGUSTUS	CDS	7307593	7307932	0.88	+	1	transcript_id "Ledus.S4G100900.t1"; gene_id "Ledus.S4G100900"
Ledus.S4	AUGUSTUS	exon	7307593	7307932	.	+	.	transcript_id "Ledus.S4G100900.t1"; gene_id "Ledus.S4G100900"
Ledus.S4	AUGUSTUS	stop_codon	7307933	7307935	.	+	0	transcript_id "Ledus.S4G100900.t1"; gene_id "Ledus.S4G100900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8575.t1 is derived from g9605.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	269095	270125	.	-	.	Ledus.S3G005200
Ledus.S3	AUGUSTUS	transcript	269095	270125	.	-	.	transcript_id "Ledus.S3G005200.t1"; gene_id "Ledus.S3G005200"
Ledus.S3	AUGUSTUS	stop_codon	269092	269094	.	-	0	transcript_id "Ledus.S3G005200.t1"; gene_id "Ledus.S3G005200"
Ledus.S3	AUGUSTUS	CDS	269095	269193	1	-	0	transcript_id "Ledus.S3G005200.t1"; gene_id "Ledus.S3G005200"
Ledus.S3	AUGUSTUS	exon	269095	269193	.	-	.	transcript_id "Ledus.S3G005200.t1"; gene_id "Ledus.S3G005200"
Ledus.S3	AUGUSTUS	intron	269194	269279	.	-	.	transcript_id "Ledus.S3G005200.t1"; gene_id "Ledus.S3G005200"
Ledus.S3	AUGUSTUS	CDS	269280	270125	0.72	-	0	transcript_id "Ledus.S3G005200.t1"; gene_id "Ledus.S3G005200"
Ledus.S3	AUGUSTUS	exon	269280	270125	.	-	.	transcript_id "Ledus.S3G005200.t1"; gene_id "Ledus.S3G005200"
Ledus.S3	AUGUSTUS	start_codon	270123	270125	.	-	0	transcript_id "Ledus.S3G005200.t1"; gene_id "Ledus.S3G005200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1639.t1 is derived from g8500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11513259	11515335	.	+	.	Ledus.S2G152100
Ledus.S2	AUGUSTUS	transcript	11513259	11515335	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	start_codon	11513259	11513261	.	+	0	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	CDS	11513259	11513852	0.86	+	0	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	exon	11513259	11513852	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	intron	11513853	11514005	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	CDS	11514006	11514074	1	+	0	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	exon	11514006	11514074	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	intron	11514075	11514247	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	CDS	11514248	11514379	1	+	0	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	exon	11514248	11514379	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	intron	11514380	11514482	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	CDS	11514483	11514536	1	+	0	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	exon	11514483	11514536	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	intron	11514537	11514636	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	CDS	11514637	11514681	1	+	0	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	exon	11514637	11514681	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	intron	11514682	11514808	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	CDS	11514809	11514951	1	+	0	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	exon	11514809	11514951	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	intron	11514952	11515064	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	CDS	11515065	11515190	1	+	1	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	exon	11515065	11515190	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	intron	11515191	11515289	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	CDS	11515290	11515335	0.9	+	1	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	exon	11515290	11515335	.	+	.	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
Ledus.S2	AUGUSTUS	stop_codon	11515336	11515338	.	+	0	transcript_id "Ledus.S2G152100.t1"; gene_id "Ledus.S2G152100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7109.t1 is derived from g6640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1579577	1580884	.	+	.	Ledus.C7G017000
Ledus.C7	AUGUSTUS	transcript	1579577	1580884	.	+	.	transcript_id "Ledus.C7G017000.t1"; gene_id "Ledus.C7G017000"
Ledus.C7	AUGUSTUS	start_codon	1579577	1579579	.	+	0	transcript_id "Ledus.C7G017000.t1"; gene_id "Ledus.C7G017000"
Ledus.C7	AUGUSTUS	CDS	1579577	1580884	0.99	+	0	transcript_id "Ledus.C7G017000.t1"; gene_id "Ledus.C7G017000"
Ledus.C7	AUGUSTUS	exon	1579577	1580884	.	+	.	transcript_id "Ledus.C7G017000.t1"; gene_id "Ledus.C7G017000"
Ledus.C7	AUGUSTUS	stop_codon	1580885	1580887	.	+	0	transcript_id "Ledus.C7G017000.t1"; gene_id "Ledus.C7G017000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4760.t1 is derived from g2198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19633931	19635748	.	+	.	Ledus.S1G218100
Ledus.S1	AUGUSTUS	transcript	19633931	19635748	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	start_codon	19633931	19633933	.	+	0	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	CDS	19633931	19634096	0.38	+	0	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	exon	19633931	19634096	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	intron	19634097	19634177	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	CDS	19634178	19634287	0.58	+	2	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	exon	19634178	19634287	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	intron	19634288	19634389	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	CDS	19634390	19634457	1	+	0	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	exon	19634390	19634457	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	intron	19634458	19634538	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	CDS	19634539	19634635	1	+	1	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	exon	19634539	19634635	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	intron	19634636	19634739	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	CDS	19634740	19634871	1	+	0	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	exon	19634740	19634871	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	intron	19634872	19634946	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	CDS	19634947	19635055	1	+	0	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	exon	19634947	19635055	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	intron	19635056	19635127	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	CDS	19635128	19635272	1	+	2	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	exon	19635128	19635272	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	intron	19635273	19635356	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	CDS	19635357	19635399	1	+	1	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	exon	19635357	19635399	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	intron	19635400	19635484	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	CDS	19635485	19635748	1	+	0	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	exon	19635485	19635748	.	+	.	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
Ledus.S1	AUGUSTUS	stop_codon	19635749	19635751	.	+	0	transcript_id "Ledus.S1G218100.t1"; gene_id "Ledus.S1G218100"
# This transcript jg5208.t2 is derived from g2647.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5208.t3 is derived from g2647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5209.t1 is derived from g2648.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22474469	22476923	.	-	.	Ledus.S1G263000
Ledus.S1	AUGUSTUS	transcript	22474469	22476923	.	-	.	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	stop_codon	22474466	22474468	.	-	0	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	CDS	22474469	22474527	0.78	-	2	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	exon	22474469	22474527	.	-	.	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	intron	22474528	22474620	.	-	.	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	CDS	22474621	22474700	0.77	-	1	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	exon	22474621	22474700	.	-	.	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	intron	22474701	22474813	.	-	.	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	CDS	22474814	22475321	0.84	-	2	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	exon	22474814	22475321	.	-	.	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	intron	22475322	22475808	.	-	.	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	CDS	22475809	22476692	1	-	1	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	exon	22475809	22476692	.	-	.	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	intron	22476693	22476780	.	-	.	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	CDS	22476781	22476923	0.96	-	0	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	exon	22476781	22476923	.	-	.	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	start_codon	22476921	22476923	.	-	0	transcript_id "Ledus.S1G263000.t1"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	transcript	22474469	22476923	.	-	.	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	stop_codon	22474466	22474468	.	-	0	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	CDS	22474469	22474527	0.84	-	2	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	exon	22474469	22474527	.	-	.	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	intron	22474528	22474620	.	-	.	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	CDS	22474621	22474700	0.67	-	1	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	exon	22474621	22474700	.	-	.	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	intron	22474701	22474813	.	-	.	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	CDS	22474814	22475195	0.69	-	2	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	exon	22474814	22475195	.	-	.	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	intron	22475196	22475808	.	-	.	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	CDS	22475809	22476692	0.91	-	1	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	exon	22475809	22476692	.	-	.	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	intron	22476693	22476780	.	-	.	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	CDS	22476781	22476923	0.97	-	0	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	exon	22476781	22476923	.	-	.	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
Ledus.S1	AUGUSTUS	start_codon	22476921	22476923	.	-	0	transcript_id "Ledus.S1G263000.t2"; gene_id "Ledus.S1G263000"
# This transcript jg11441.t2 is derived from g5059.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11442.t1 is derived from g5060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4351940	4352416	.	-	.	Ledus.S4G059800
Ledus.S4	AUGUSTUS	transcript	4351940	4352416	.	-	.	transcript_id "Ledus.S4G059800.t1"; gene_id "Ledus.S4G059800"
Ledus.S4	AUGUSTUS	stop_codon	4351937	4351939	.	-	0	transcript_id "Ledus.S4G059800.t1"; gene_id "Ledus.S4G059800"
Ledus.S4	AUGUSTUS	CDS	4351940	4352416	0.63	-	0	transcript_id "Ledus.S4G059800.t1"; gene_id "Ledus.S4G059800"
Ledus.S4	AUGUSTUS	exon	4351940	4352416	.	-	.	transcript_id "Ledus.S4G059800.t1"; gene_id "Ledus.S4G059800"
Ledus.S4	AUGUSTUS	start_codon	4352414	4352416	.	-	0	transcript_id "Ledus.S4G059800.t1"; gene_id "Ledus.S4G059800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2401.t1 is derived from g9264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17893383	17894243	.	-	.	Ledus.S2G228300
Ledus.S2	AUGUSTUS	transcript	17893383	17894243	.	-	.	transcript_id "Ledus.S2G228300.t1"; gene_id "Ledus.S2G228300"
Ledus.S2	AUGUSTUS	stop_codon	17893380	17893382	.	-	0	transcript_id "Ledus.S2G228300.t1"; gene_id "Ledus.S2G228300"
Ledus.S2	AUGUSTUS	CDS	17893383	17894243	0.7	-	0	transcript_id "Ledus.S2G228300.t1"; gene_id "Ledus.S2G228300"
Ledus.S2	AUGUSTUS	exon	17893383	17894243	.	-	.	transcript_id "Ledus.S2G228300.t1"; gene_id "Ledus.S2G228300"
Ledus.S2	AUGUSTUS	start_codon	17894241	17894243	.	-	0	transcript_id "Ledus.S2G228300.t1"; gene_id "Ledus.S2G228300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4382.t1 is derived from g1818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16738276	16740744	.	+	.	Ledus.S1G180300
Ledus.S1	AUGUSTUS	transcript	16738276	16740744	.	+	.	transcript_id "Ledus.S1G180300.t1"; gene_id "Ledus.S1G180300"
Ledus.S1	AUGUSTUS	start_codon	16738276	16738278	.	+	0	transcript_id "Ledus.S1G180300.t1"; gene_id "Ledus.S1G180300"
Ledus.S1	AUGUSTUS	CDS	16738276	16739672	0.94	+	0	transcript_id "Ledus.S1G180300.t1"; gene_id "Ledus.S1G180300"
Ledus.S1	AUGUSTUS	exon	16738276	16739672	.	+	.	transcript_id "Ledus.S1G180300.t1"; gene_id "Ledus.S1G180300"
Ledus.S1	AUGUSTUS	intron	16739673	16739802	.	+	.	transcript_id "Ledus.S1G180300.t1"; gene_id "Ledus.S1G180300"
Ledus.S1	AUGUSTUS	CDS	16739803	16740072	0.99	+	1	transcript_id "Ledus.S1G180300.t1"; gene_id "Ledus.S1G180300"
Ledus.S1	AUGUSTUS	exon	16739803	16740072	.	+	.	transcript_id "Ledus.S1G180300.t1"; gene_id "Ledus.S1G180300"
Ledus.S1	AUGUSTUS	intron	16740073	16740182	.	+	.	transcript_id "Ledus.S1G180300.t1"; gene_id "Ledus.S1G180300"
Ledus.S1	AUGUSTUS	CDS	16740183	16740744	0.97	+	1	transcript_id "Ledus.S1G180300.t1"; gene_id "Ledus.S1G180300"
Ledus.S1	AUGUSTUS	exon	16740183	16740744	.	+	.	transcript_id "Ledus.S1G180300.t1"; gene_id "Ledus.S1G180300"
Ledus.S1	AUGUSTUS	stop_codon	16740745	16740747	.	+	0	transcript_id "Ledus.S1G180300.t1"; gene_id "Ledus.S1G180300"
# This transcript jg6893.t2 is derived from g4337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6893.t3 is derived from g4337.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6894.t1 is derived from g4338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35049978	35051576	.	+	.	Ledus.S1G431500
Ledus.S1	AUGUSTUS	transcript	35049978	35051576	.	+	.	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	start_codon	35049978	35049980	.	+	0	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	CDS	35049978	35050761	0.82	+	0	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	exon	35049978	35050761	.	+	.	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	intron	35050762	35050861	.	+	.	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	CDS	35050862	35051025	1	+	2	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	exon	35050862	35051025	.	+	.	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	intron	35051026	35051124	.	+	.	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	CDS	35051125	35051232	0.92	+	0	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	exon	35051125	35051232	.	+	.	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	intron	35051233	35051342	.	+	.	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	CDS	35051343	35051576	0.85	+	0	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	exon	35051343	35051576	.	+	.	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
Ledus.S1	AUGUSTUS	stop_codon	35051577	35051579	.	+	0	transcript_id "Ledus.S1G431500.t1"; gene_id "Ledus.S1G431500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3314.t1 is derived from g749.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7438324	7439813	.	-	.	Ledus.S1G073500
Ledus.S1	AUGUSTUS	transcript	7438324	7439813	.	-	.	transcript_id "Ledus.S1G073500.t1"; gene_id "Ledus.S1G073500"
Ledus.S1	AUGUSTUS	stop_codon	7438321	7438323	.	-	0	transcript_id "Ledus.S1G073500.t1"; gene_id "Ledus.S1G073500"
Ledus.S1	AUGUSTUS	CDS	7438324	7438388	0.71	-	2	transcript_id "Ledus.S1G073500.t1"; gene_id "Ledus.S1G073500"
Ledus.S1	AUGUSTUS	exon	7438324	7438388	.	-	.	transcript_id "Ledus.S1G073500.t1"; gene_id "Ledus.S1G073500"
Ledus.S1	AUGUSTUS	intron	7438389	7438485	.	-	.	transcript_id "Ledus.S1G073500.t1"; gene_id "Ledus.S1G073500"
Ledus.S1	AUGUSTUS	CDS	7438486	7438552	1	-	0	transcript_id "Ledus.S1G073500.t1"; gene_id "Ledus.S1G073500"
Ledus.S1	AUGUSTUS	exon	7438486	7438552	.	-	.	transcript_id "Ledus.S1G073500.t1"; gene_id "Ledus.S1G073500"
Ledus.S1	AUGUSTUS	intron	7438553	7438700	.	-	.	transcript_id "Ledus.S1G073500.t1"; gene_id "Ledus.S1G073500"
Ledus.S1	AUGUSTUS	CDS	7438701	7439813	0.77	-	0	transcript_id "Ledus.S1G073500.t1"; gene_id "Ledus.S1G073500"
Ledus.S1	AUGUSTUS	exon	7438701	7439813	.	-	.	transcript_id "Ledus.S1G073500.t1"; gene_id "Ledus.S1G073500"
Ledus.S1	AUGUSTUS	start_codon	7439811	7439813	.	-	0	transcript_id "Ledus.S1G073500.t1"; gene_id "Ledus.S1G073500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10560.t1 is derived from g11590.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16142258	16144060	.	-	.	Ledus.S3G203700
Ledus.S3	AUGUSTUS	transcript	16142258	16144060	.	-	.	transcript_id "Ledus.S3G203700.t1"; gene_id "Ledus.S3G203700"
Ledus.S3	AUGUSTUS	stop_codon	16142255	16142257	.	-	0	transcript_id "Ledus.S3G203700.t1"; gene_id "Ledus.S3G203700"
Ledus.S3	AUGUSTUS	CDS	16142258	16144060	0.94	-	0	transcript_id "Ledus.S3G203700.t1"; gene_id "Ledus.S3G203700"
Ledus.S3	AUGUSTUS	exon	16142258	16144060	.	-	.	transcript_id "Ledus.S3G203700.t1"; gene_id "Ledus.S3G203700"
Ledus.S3	AUGUSTUS	start_codon	16144058	16144060	.	-	0	transcript_id "Ledus.S3G203700.t1"; gene_id "Ledus.S3G203700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10160.t1 is derived from g11190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13398001	13398839	.	-	.	Ledus.S3G163700
Ledus.S3	AUGUSTUS	transcript	13398001	13398839	.	-	.	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	stop_codon	13397998	13398000	.	-	0	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	CDS	13398001	13398129	0.99	-	0	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	exon	13398001	13398129	.	-	.	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	intron	13398130	13398252	.	-	.	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	CDS	13398253	13398381	1	-	0	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	exon	13398253	13398381	.	-	.	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	intron	13398382	13398451	.	-	.	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	CDS	13398452	13398505	1	-	0	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	exon	13398452	13398505	.	-	.	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	intron	13398506	13398596	.	-	.	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	CDS	13398597	13398839	1	-	0	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	exon	13398597	13398839	.	-	.	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
Ledus.S3	AUGUSTUS	start_codon	13398837	13398839	.	-	0	transcript_id "Ledus.S3G163700.t1"; gene_id "Ledus.S3G163700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg242.t1 is derived from g7103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1081851	1085199	.	+	.	Ledus.S2G012400
Ledus.S2	AUGUSTUS	transcript	1081851	1085199	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	start_codon	1081851	1081853	.	+	0	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	CDS	1081851	1082041	0.77	+	0	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	exon	1081851	1082041	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	intron	1082042	1082125	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	CDS	1082126	1082467	0.48	+	1	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	exon	1082126	1082467	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	intron	1082468	1082636	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	CDS	1082637	1082895	0.27	+	1	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	exon	1082637	1082895	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	intron	1082896	1083002	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	CDS	1083003	1083173	0.9	+	0	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	exon	1083003	1083173	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	intron	1083174	1083259	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	CDS	1083260	1083403	1	+	0	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	exon	1083260	1083403	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	intron	1083404	1083510	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	CDS	1083511	1083630	1	+	0	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	exon	1083511	1083630	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	intron	1083631	1083750	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	CDS	1083751	1083942	1	+	0	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	exon	1083751	1083942	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	intron	1083943	1084154	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	CDS	1084155	1084303	1	+	0	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	exon	1084155	1084303	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	intron	1084304	1084440	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	CDS	1084441	1084623	1	+	1	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	exon	1084441	1084623	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	intron	1084624	1084739	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	CDS	1084740	1085199	0.97	+	1	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	exon	1084740	1085199	.	+	.	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
Ledus.S2	AUGUSTUS	stop_codon	1085200	1085202	.	+	0	transcript_id "Ledus.S2G012400.t1"; gene_id "Ledus.S2G012400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10777.t1 is derived from g11809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17599047	17600727	.	+	.	Ledus.S3G225400
Ledus.S3	AUGUSTUS	transcript	17599047	17600727	.	+	.	transcript_id "Ledus.S3G225400.t1"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	start_codon	17599047	17599049	.	+	0	transcript_id "Ledus.S3G225400.t1"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	CDS	17599047	17600008	0.83	+	0	transcript_id "Ledus.S3G225400.t1"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	exon	17599047	17600008	.	+	.	transcript_id "Ledus.S3G225400.t1"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	intron	17600009	17600387	.	+	.	transcript_id "Ledus.S3G225400.t1"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	CDS	17600388	17600727	0.88	+	1	transcript_id "Ledus.S3G225400.t1"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	exon	17600388	17600727	.	+	.	transcript_id "Ledus.S3G225400.t1"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	stop_codon	17600728	17600730	.	+	0	transcript_id "Ledus.S3G225400.t1"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	transcript	17600210	17600727	.	+	.	transcript_id "Ledus.S3G225400.t2"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	start_codon	17600210	17600212	.	+	0	transcript_id "Ledus.S3G225400.t2"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	CDS	17600210	17600229	0.34	+	0	transcript_id "Ledus.S3G225400.t2"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	exon	17600210	17600229	.	+	.	transcript_id "Ledus.S3G225400.t2"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	intron	17600230	17600387	.	+	.	transcript_id "Ledus.S3G225400.t2"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	CDS	17600388	17600727	0.89	+	1	transcript_id "Ledus.S3G225400.t2"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	exon	17600388	17600727	.	+	.	transcript_id "Ledus.S3G225400.t2"; gene_id "Ledus.S3G225400"
Ledus.S3	AUGUSTUS	stop_codon	17600728	17600730	.	+	0	transcript_id "Ledus.S3G225400.t2"; gene_id "Ledus.S3G225400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg40.t1 is derived from g9552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C12	AUGUSTUS	gene	252774	253502	.	+	.	Ledus.C12G001100
Ledus.C12	AUGUSTUS	transcript	252774	253502	.	+	.	transcript_id "Ledus.C12G001100.t1"; gene_id "Ledus.C12G001100"
Ledus.C12	AUGUSTUS	start_codon	252774	252776	.	+	0	transcript_id "Ledus.C12G001100.t1"; gene_id "Ledus.C12G001100"
Ledus.C12	AUGUSTUS	CDS	252774	253502	0.81	+	0	transcript_id "Ledus.C12G001100.t1"; gene_id "Ledus.C12G001100"
Ledus.C12	AUGUSTUS	exon	252774	253502	.	+	.	transcript_id "Ledus.C12G001100.t1"; gene_id "Ledus.C12G001100"
Ledus.C12	AUGUSTUS	stop_codon	253503	253505	.	+	0	transcript_id "Ledus.C12G001100.t1"; gene_id "Ledus.C12G001100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4089.t1 is derived from g1525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14635763	14637883	.	-	.	Ledus.S1G151000
Ledus.S1	AUGUSTUS	transcript	14635763	14637883	.	-	.	transcript_id "Ledus.S1G151000.t1"; gene_id "Ledus.S1G151000"
Ledus.S1	AUGUSTUS	stop_codon	14635760	14635762	.	-	0	transcript_id "Ledus.S1G151000.t1"; gene_id "Ledus.S1G151000"
Ledus.S1	AUGUSTUS	CDS	14635763	14637883	0.91	-	0	transcript_id "Ledus.S1G151000.t1"; gene_id "Ledus.S1G151000"
Ledus.S1	AUGUSTUS	exon	14635763	14637883	.	-	.	transcript_id "Ledus.S1G151000.t1"; gene_id "Ledus.S1G151000"
Ledus.S1	AUGUSTUS	start_codon	14637881	14637883	.	-	0	transcript_id "Ledus.S1G151000.t1"; gene_id "Ledus.S1G151000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6317.t1 is derived from g3760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30466912	30474626	.	+	.	Ledus.S1G373800
Ledus.S1	AUGUSTUS	transcript	30466912	30474626	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	start_codon	30466912	30466914	.	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30466912	30467097	0.86	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30466912	30467097	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30467098	30467262	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30467263	30467347	1	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30467263	30467347	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30467348	30467476	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30467477	30468357	1	+	2	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30467477	30468357	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30468358	30468556	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30468557	30468757	1	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30468557	30468757	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30468758	30468859	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30468860	30468970	0.98	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30468860	30468970	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30468971	30469075	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30469076	30469509	1	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30469076	30469509	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30469510	30469623	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30469624	30469732	1	+	1	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30469624	30469732	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30469733	30469913	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30469914	30469994	1	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30469914	30469994	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30469995	30470073	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30470074	30470246	1	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30470074	30470246	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30470247	30470401	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30470402	30470527	1	+	1	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30470402	30470527	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30470528	30470614	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30470615	30470776	1	+	1	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30470615	30470776	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30470777	30470899	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30470900	30470957	1	+	1	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30470900	30470957	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30470958	30471096	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30471097	30471318	1	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30471097	30471318	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30471319	30471434	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30471435	30471581	1	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30471435	30471581	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30471582	30471759	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30471760	30472242	0.59	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30471760	30472242	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30472243	30472379	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30472380	30472643	0.99	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30472380	30472643	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30472644	30472758	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30472759	30472866	0.99	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30472759	30472866	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30472867	30473041	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30473042	30473136	1	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30473042	30473136	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30473137	30473224	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30473225	30473381	1	+	1	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30473225	30473381	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30473382	30473546	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30473547	30473750	1	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30473547	30473750	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30473751	30473869	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30473870	30474070	1	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30473870	30474070	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	intron	30474071	30474164	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	CDS	30474165	30474626	1	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	exon	30474165	30474626	.	+	.	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
Ledus.S1	AUGUSTUS	stop_codon	30474627	30474629	.	+	0	transcript_id "Ledus.S1G373800.t1"; gene_id "Ledus.S1G373800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12968.t1 is derived from g6778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1284965	1285273	.	+	.	Ledus.S6G003000
Ledus.S6	AUGUSTUS	transcript	1284965	1285273	.	+	.	transcript_id "Ledus.S6G003000.t1"; gene_id "Ledus.S6G003000"
Ledus.S6	AUGUSTUS	start_codon	1284965	1284967	.	+	0	transcript_id "Ledus.S6G003000.t1"; gene_id "Ledus.S6G003000"
Ledus.S6	AUGUSTUS	CDS	1284965	1285273	0.68	+	0	transcript_id "Ledus.S6G003000.t1"; gene_id "Ledus.S6G003000"
Ledus.S6	AUGUSTUS	exon	1284965	1285273	.	+	.	transcript_id "Ledus.S6G003000.t1"; gene_id "Ledus.S6G003000"
Ledus.S6	AUGUSTUS	stop_codon	1285274	1285276	.	+	0	transcript_id "Ledus.S6G003000.t1"; gene_id "Ledus.S6G003000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3302.t1 is derived from g737.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7380295	7382619	.	+	.	Ledus.S1G072300
Ledus.S1	AUGUSTUS	transcript	7380295	7382619	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	start_codon	7380295	7380297	.	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	CDS	7380295	7380420	1	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	exon	7380295	7380420	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	intron	7380421	7380503	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	CDS	7380504	7380617	1	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	exon	7380504	7380617	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	intron	7380618	7380717	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	CDS	7380718	7380828	1	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	exon	7380718	7380828	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	intron	7380829	7380910	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	CDS	7380911	7380973	1	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	exon	7380911	7380973	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	intron	7380974	7381050	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	CDS	7381051	7381164	1	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	exon	7381051	7381164	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	intron	7381165	7381250	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	CDS	7381251	7381400	1	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	exon	7381251	7381400	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	intron	7381401	7381479	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	CDS	7381480	7381557	1	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	exon	7381480	7381557	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	intron	7381558	7381628	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	CDS	7381629	7381850	0.98	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	exon	7381629	7381850	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	intron	7381851	7381957	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	CDS	7381958	7382044	1	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	exon	7381958	7382044	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	intron	7382045	7382139	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	CDS	7382140	7382259	1	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	exon	7382140	7382259	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	intron	7382260	7382338	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	CDS	7382339	7382431	1	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	exon	7382339	7382431	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	intron	7382432	7382511	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	CDS	7382512	7382619	1	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	exon	7382512	7382619	.	+	.	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
Ledus.S1	AUGUSTUS	stop_codon	7382620	7382622	.	+	0	transcript_id "Ledus.S1G072300.t1"; gene_id "Ledus.S1G072300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7205.t1 is derived from g6736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2131132	2131572	.	-	.	Ledus.C7G026600
Ledus.C7	AUGUSTUS	transcript	2131132	2131572	.	-	.	transcript_id "Ledus.C7G026600.t1"; gene_id "Ledus.C7G026600"
Ledus.C7	AUGUSTUS	stop_codon	2131129	2131131	.	-	0	transcript_id "Ledus.C7G026600.t1"; gene_id "Ledus.C7G026600"
Ledus.C7	AUGUSTUS	CDS	2131132	2131572	0.92	-	0	transcript_id "Ledus.C7G026600.t1"; gene_id "Ledus.C7G026600"
Ledus.C7	AUGUSTUS	exon	2131132	2131572	.	-	.	transcript_id "Ledus.C7G026600.t1"; gene_id "Ledus.C7G026600"
Ledus.C7	AUGUSTUS	start_codon	2131570	2131572	.	-	0	transcript_id "Ledus.C7G026600.t1"; gene_id "Ledus.C7G026600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6382.t1 is derived from g3825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30926365	30926628	.	+	.	Ledus.S1G380300
Ledus.S1	AUGUSTUS	transcript	30926365	30926628	.	+	.	transcript_id "Ledus.S1G380300.t1"; gene_id "Ledus.S1G380300"
Ledus.S1	AUGUSTUS	start_codon	30926365	30926367	.	+	0	transcript_id "Ledus.S1G380300.t1"; gene_id "Ledus.S1G380300"
Ledus.S1	AUGUSTUS	CDS	30926365	30926628	0.98	+	0	transcript_id "Ledus.S1G380300.t1"; gene_id "Ledus.S1G380300"
Ledus.S1	AUGUSTUS	exon	30926365	30926628	.	+	.	transcript_id "Ledus.S1G380300.t1"; gene_id "Ledus.S1G380300"
Ledus.S1	AUGUSTUS	stop_codon	30926629	30926631	.	+	0	transcript_id "Ledus.S1G380300.t1"; gene_id "Ledus.S1G380300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3971.t1 is derived from g1407.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13817553	13819024	.	-	.	Ledus.S1G139200
Ledus.S1	AUGUSTUS	transcript	13817553	13819024	.	-	.	transcript_id "Ledus.S1G139200.t1"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	stop_codon	13817550	13817552	.	-	0	transcript_id "Ledus.S1G139200.t1"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	CDS	13817553	13818615	0.57	-	1	transcript_id "Ledus.S1G139200.t1"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	exon	13817553	13818615	.	-	.	transcript_id "Ledus.S1G139200.t1"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	intron	13818616	13818812	.	-	.	transcript_id "Ledus.S1G139200.t1"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	CDS	13818813	13818842	1	-	1	transcript_id "Ledus.S1G139200.t1"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	exon	13818813	13818842	.	-	.	transcript_id "Ledus.S1G139200.t1"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	intron	13818843	13819004	.	-	.	transcript_id "Ledus.S1G139200.t1"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	CDS	13819005	13819024	0.99	-	0	transcript_id "Ledus.S1G139200.t1"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	exon	13819005	13819024	.	-	.	transcript_id "Ledus.S1G139200.t1"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	start_codon	13819022	13819024	.	-	0	transcript_id "Ledus.S1G139200.t1"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	transcript	13817553	13819007	.	-	.	transcript_id "Ledus.S1G139200.t2"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	stop_codon	13817550	13817552	.	-	0	transcript_id "Ledus.S1G139200.t2"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	CDS	13817553	13818548	0.51	-	0	transcript_id "Ledus.S1G139200.t2"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	exon	13817553	13818548	.	-	.	transcript_id "Ledus.S1G139200.t2"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	intron	13818549	13818812	.	-	.	transcript_id "Ledus.S1G139200.t2"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	CDS	13818813	13818842	0.98	-	0	transcript_id "Ledus.S1G139200.t2"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	exon	13818813	13818842	.	-	.	transcript_id "Ledus.S1G139200.t2"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	intron	13818843	13819004	.	-	.	transcript_id "Ledus.S1G139200.t2"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	CDS	13819005	13819007	0.98	-	0	transcript_id "Ledus.S1G139200.t2"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	exon	13819005	13819007	.	-	.	transcript_id "Ledus.S1G139200.t2"; gene_id "Ledus.S1G139200"
Ledus.S1	AUGUSTUS	start_codon	13819005	13819007	.	-	0	transcript_id "Ledus.S1G139200.t2"; gene_id "Ledus.S1G139200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3757.t1 is derived from g1193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11690996	11691318	.	+	.	Ledus.S1G117800
Ledus.S1	AUGUSTUS	transcript	11690996	11691318	.	+	.	transcript_id "Ledus.S1G117800.t1"; gene_id "Ledus.S1G117800"
Ledus.S1	AUGUSTUS	start_codon	11690996	11690998	.	+	0	transcript_id "Ledus.S1G117800.t1"; gene_id "Ledus.S1G117800"
Ledus.S1	AUGUSTUS	CDS	11690996	11691125	0.85	+	0	transcript_id "Ledus.S1G117800.t1"; gene_id "Ledus.S1G117800"
Ledus.S1	AUGUSTUS	exon	11690996	11691125	.	+	.	transcript_id "Ledus.S1G117800.t1"; gene_id "Ledus.S1G117800"
Ledus.S1	AUGUSTUS	intron	11691126	11691226	.	+	.	transcript_id "Ledus.S1G117800.t1"; gene_id "Ledus.S1G117800"
Ledus.S1	AUGUSTUS	CDS	11691227	11691318	0.88	+	2	transcript_id "Ledus.S1G117800.t1"; gene_id "Ledus.S1G117800"
Ledus.S1	AUGUSTUS	exon	11691227	11691318	.	+	.	transcript_id "Ledus.S1G117800.t1"; gene_id "Ledus.S1G117800"
Ledus.S1	AUGUSTUS	stop_codon	11691319	11691321	.	+	0	transcript_id "Ledus.S1G117800.t1"; gene_id "Ledus.S1G117800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg205.t1 is derived from g7066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	877783	880603	.	+	.	Ledus.S2G008700
Ledus.S2	AUGUSTUS	transcript	877783	880603	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	start_codon	877783	877785	.	+	0	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	CDS	877783	877829	0.44	+	0	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	exon	877783	877829	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	intron	877830	877916	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	CDS	877917	877927	0.53	+	1	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	exon	877917	877927	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	intron	877928	878146	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	CDS	878147	878211	0.53	+	2	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	exon	878147	878211	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	intron	878212	878489	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	CDS	878490	878619	0.53	+	0	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	exon	878490	878619	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	intron	878620	878706	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	CDS	878707	878924	0.53	+	2	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	exon	878707	878924	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	intron	878925	879010	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	CDS	879011	879558	0.7	+	0	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	exon	879011	879558	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	intron	879559	879660	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	CDS	879661	880603	0.88	+	1	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	exon	879661	880603	.	+	.	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
Ledus.S2	AUGUSTUS	stop_codon	880604	880606	.	+	0	transcript_id "Ledus.S2G008700.t1"; gene_id "Ledus.S2G008700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12088.t1 is derived from g5707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9463666	9464754	.	-	.	Ledus.S4G124400
Ledus.S4	AUGUSTUS	transcript	9463666	9464754	.	-	.	transcript_id "Ledus.S4G124400.t1"; gene_id "Ledus.S4G124400"
Ledus.S4	AUGUSTUS	stop_codon	9463663	9463665	.	-	0	transcript_id "Ledus.S4G124400.t1"; gene_id "Ledus.S4G124400"
Ledus.S4	AUGUSTUS	CDS	9463666	9464127	1	-	0	transcript_id "Ledus.S4G124400.t1"; gene_id "Ledus.S4G124400"
Ledus.S4	AUGUSTUS	exon	9463666	9464127	.	-	.	transcript_id "Ledus.S4G124400.t1"; gene_id "Ledus.S4G124400"
Ledus.S4	AUGUSTUS	intron	9464128	9464226	.	-	.	transcript_id "Ledus.S4G124400.t1"; gene_id "Ledus.S4G124400"
Ledus.S4	AUGUSTUS	CDS	9464227	9464754	0.94	-	0	transcript_id "Ledus.S4G124400.t1"; gene_id "Ledus.S4G124400"
Ledus.S4	AUGUSTUS	exon	9464227	9464754	.	-	.	transcript_id "Ledus.S4G124400.t1"; gene_id "Ledus.S4G124400"
Ledus.S4	AUGUSTUS	start_codon	9464752	9464754	.	-	0	transcript_id "Ledus.S4G124400.t1"; gene_id "Ledus.S4G124400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8035.t1 is derived from g12706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8650335	8651690	.	+	.	Ledus.S5G081300
Ledus.S5	AUGUSTUS	transcript	8650335	8651690	.	+	.	transcript_id "Ledus.S5G081300.t1"; gene_id "Ledus.S5G081300"
Ledus.S5	AUGUSTUS	start_codon	8650335	8650337	.	+	0	transcript_id "Ledus.S5G081300.t1"; gene_id "Ledus.S5G081300"
Ledus.S5	AUGUSTUS	CDS	8650335	8650586	0.65	+	0	transcript_id "Ledus.S5G081300.t1"; gene_id "Ledus.S5G081300"
Ledus.S5	AUGUSTUS	exon	8650335	8650586	.	+	.	transcript_id "Ledus.S5G081300.t1"; gene_id "Ledus.S5G081300"
Ledus.S5	AUGUSTUS	intron	8650587	8650680	.	+	.	transcript_id "Ledus.S5G081300.t1"; gene_id "Ledus.S5G081300"
Ledus.S5	AUGUSTUS	CDS	8650681	8650754	1	+	0	transcript_id "Ledus.S5G081300.t1"; gene_id "Ledus.S5G081300"
Ledus.S5	AUGUSTUS	exon	8650681	8650754	.	+	.	transcript_id "Ledus.S5G081300.t1"; gene_id "Ledus.S5G081300"
Ledus.S5	AUGUSTUS	intron	8650755	8651617	.	+	.	transcript_id "Ledus.S5G081300.t1"; gene_id "Ledus.S5G081300"
Ledus.S5	AUGUSTUS	CDS	8651618	8651690	0.6	+	1	transcript_id "Ledus.S5G081300.t1"; gene_id "Ledus.S5G081300"
Ledus.S5	AUGUSTUS	exon	8651618	8651690	.	+	.	transcript_id "Ledus.S5G081300.t1"; gene_id "Ledus.S5G081300"
Ledus.S5	AUGUSTUS	stop_codon	8651691	8651693	.	+	0	transcript_id "Ledus.S5G081300.t1"; gene_id "Ledus.S5G081300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9525.t1 is derived from g10555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7589790	7590827	.	+	.	Ledus.S3G100200
Ledus.S3	AUGUSTUS	transcript	7589790	7590827	.	+	.	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	start_codon	7589790	7589792	.	+	0	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	CDS	7589790	7590225	0.21	+	0	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	exon	7589790	7590225	.	+	.	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	intron	7590226	7590319	.	+	.	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	CDS	7590320	7590348	0.21	+	2	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	exon	7590320	7590348	.	+	.	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	intron	7590349	7590603	.	+	.	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	CDS	7590604	7590654	0.21	+	0	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	exon	7590604	7590654	.	+	.	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	intron	7590655	7590717	.	+	.	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	CDS	7590718	7590739	0.23	+	0	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	exon	7590718	7590739	.	+	.	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	intron	7590740	7590822	.	+	.	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	CDS	7590823	7590827	0.23	+	2	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	exon	7590823	7590827	.	+	.	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
Ledus.S3	AUGUSTUS	stop_codon	7590828	7590830	.	+	0	transcript_id "Ledus.S3G100200.t1"; gene_id "Ledus.S3G100200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9666.t1 is derived from g10696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8878846	8880009	.	-	.	Ledus.S3G114300
Ledus.S3	AUGUSTUS	transcript	8878846	8880009	.	-	.	transcript_id "Ledus.S3G114300.t1"; gene_id "Ledus.S3G114300"
Ledus.S3	AUGUSTUS	stop_codon	8878843	8878845	.	-	0	transcript_id "Ledus.S3G114300.t1"; gene_id "Ledus.S3G114300"
Ledus.S3	AUGUSTUS	CDS	8878846	8880009	0.42	-	0	transcript_id "Ledus.S3G114300.t1"; gene_id "Ledus.S3G114300"
Ledus.S3	AUGUSTUS	exon	8878846	8880009	.	-	.	transcript_id "Ledus.S3G114300.t1"; gene_id "Ledus.S3G114300"
Ledus.S3	AUGUSTUS	start_codon	8880007	8880009	.	-	0	transcript_id "Ledus.S3G114300.t1"; gene_id "Ledus.S3G114300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8053.t1 is derived from g12724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8841024	8842275	.	-	.	Ledus.S5G083100
Ledus.S5	AUGUSTUS	transcript	8841024	8842275	.	-	.	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	stop_codon	8841021	8841023	.	-	0	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	CDS	8841024	8841212	0.91	-	0	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	exon	8841024	8841212	.	-	.	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	intron	8841213	8841330	.	-	.	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	CDS	8841331	8841533	0.43	-	2	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	exon	8841331	8841533	.	-	.	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	intron	8841534	8841612	.	-	.	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	CDS	8841613	8841717	0.45	-	2	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	exon	8841613	8841717	.	-	.	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	intron	8841718	8841848	.	-	.	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	CDS	8841849	8841876	0.94	-	0	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	exon	8841849	8841876	.	-	.	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	intron	8841877	8842043	.	-	.	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	CDS	8842044	8842087	0.98	-	2	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	exon	8842044	8842087	.	-	.	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	intron	8842088	8842184	.	-	.	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	CDS	8842185	8842275	0.97	-	0	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	exon	8842185	8842275	.	-	.	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
Ledus.S5	AUGUSTUS	start_codon	8842273	8842275	.	-	0	transcript_id "Ledus.S5G083100.t1"; gene_id "Ledus.S5G083100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg951.t1 is derived from g7812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6276013	6277743	.	-	.	Ledus.S2G083300
Ledus.S2	AUGUSTUS	transcript	6276013	6277743	.	-	.	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	stop_codon	6276010	6276012	.	-	0	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	CDS	6276013	6276239	0.64	-	2	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	exon	6276013	6276239	.	-	.	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	intron	6276240	6276414	.	-	.	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	CDS	6276415	6276487	0.78	-	0	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	exon	6276415	6276487	.	-	.	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	intron	6276488	6276648	.	-	.	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	CDS	6276649	6276703	0.8	-	1	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	exon	6276649	6276703	.	-	.	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	intron	6276704	6276908	.	-	.	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	CDS	6276909	6277066	0.43	-	0	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	exon	6276909	6277066	.	-	.	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	intron	6277067	6277137	.	-	.	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	CDS	6277138	6277743	0.45	-	0	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	exon	6277138	6277743	.	-	.	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
Ledus.S2	AUGUSTUS	start_codon	6277741	6277743	.	-	0	transcript_id "Ledus.S2G083300.t1"; gene_id "Ledus.S2G083300"
# This transcript jg10693.t2 is derived from g11723.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10694.t1 is derived from g11724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17135849	17136143	.	-	.	Ledus.S3G217100
Ledus.S3	AUGUSTUS	transcript	17135849	17136143	.	-	.	transcript_id "Ledus.S3G217100.t1"; gene_id "Ledus.S3G217100"
Ledus.S3	AUGUSTUS	stop_codon	17135846	17135848	.	-	0	transcript_id "Ledus.S3G217100.t1"; gene_id "Ledus.S3G217100"
Ledus.S3	AUGUSTUS	CDS	17135849	17136017	0.43	-	1	transcript_id "Ledus.S3G217100.t1"; gene_id "Ledus.S3G217100"
Ledus.S3	AUGUSTUS	exon	17135849	17136017	.	-	.	transcript_id "Ledus.S3G217100.t1"; gene_id "Ledus.S3G217100"
Ledus.S3	AUGUSTUS	intron	17136018	17136084	.	-	.	transcript_id "Ledus.S3G217100.t1"; gene_id "Ledus.S3G217100"
Ledus.S3	AUGUSTUS	CDS	17136085	17136143	0.35	-	0	transcript_id "Ledus.S3G217100.t1"; gene_id "Ledus.S3G217100"
Ledus.S3	AUGUSTUS	exon	17136085	17136143	.	-	.	transcript_id "Ledus.S3G217100.t1"; gene_id "Ledus.S3G217100"
Ledus.S3	AUGUSTUS	start_codon	17136141	17136143	.	-	0	transcript_id "Ledus.S3G217100.t1"; gene_id "Ledus.S3G217100"
# This transcript jg2044.t2 is derived from g8907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2045.t1 is derived from g8908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14316619	14317916	.	+	.	Ledus.S2G192700
Ledus.S2	AUGUSTUS	transcript	14316619	14317916	.	+	.	transcript_id "Ledus.S2G192700.t1"; gene_id "Ledus.S2G192700"
Ledus.S2	AUGUSTUS	start_codon	14316619	14316621	.	+	0	transcript_id "Ledus.S2G192700.t1"; gene_id "Ledus.S2G192700"
Ledus.S2	AUGUSTUS	CDS	14316619	14316644	0.5	+	0	transcript_id "Ledus.S2G192700.t1"; gene_id "Ledus.S2G192700"
Ledus.S2	AUGUSTUS	exon	14316619	14316644	.	+	.	transcript_id "Ledus.S2G192700.t1"; gene_id "Ledus.S2G192700"
Ledus.S2	AUGUSTUS	intron	14316645	14317171	.	+	.	transcript_id "Ledus.S2G192700.t1"; gene_id "Ledus.S2G192700"
Ledus.S2	AUGUSTUS	CDS	14317172	14317247	0.01	+	1	transcript_id "Ledus.S2G192700.t1"; gene_id "Ledus.S2G192700"
Ledus.S2	AUGUSTUS	exon	14317172	14317247	.	+	.	transcript_id "Ledus.S2G192700.t1"; gene_id "Ledus.S2G192700"
Ledus.S2	AUGUSTUS	intron	14317248	14317616	.	+	.	transcript_id "Ledus.S2G192700.t1"; gene_id "Ledus.S2G192700"
Ledus.S2	AUGUSTUS	CDS	14317617	14317916	0.06	+	0	transcript_id "Ledus.S2G192700.t1"; gene_id "Ledus.S2G192700"
Ledus.S2	AUGUSTUS	exon	14317617	14317916	.	+	.	transcript_id "Ledus.S2G192700.t1"; gene_id "Ledus.S2G192700"
Ledus.S2	AUGUSTUS	stop_codon	14317917	14317919	.	+	0	transcript_id "Ledus.S2G192700.t1"; gene_id "Ledus.S2G192700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2773.t1 is derived from g207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3426457	3427439	.	+	.	Ledus.S1G019400
Ledus.S1	AUGUSTUS	transcript	3426457	3427439	.	+	.	transcript_id "Ledus.S1G019400.t1"; gene_id "Ledus.S1G019400"
Ledus.S1	AUGUSTUS	start_codon	3426457	3426459	.	+	0	transcript_id "Ledus.S1G019400.t1"; gene_id "Ledus.S1G019400"
Ledus.S1	AUGUSTUS	CDS	3426457	3426533	0.97	+	0	transcript_id "Ledus.S1G019400.t1"; gene_id "Ledus.S1G019400"
Ledus.S1	AUGUSTUS	exon	3426457	3426533	.	+	.	transcript_id "Ledus.S1G019400.t1"; gene_id "Ledus.S1G019400"
Ledus.S1	AUGUSTUS	intron	3426534	3426624	.	+	.	transcript_id "Ledus.S1G019400.t1"; gene_id "Ledus.S1G019400"
Ledus.S1	AUGUSTUS	CDS	3426625	3426918	1	+	1	transcript_id "Ledus.S1G019400.t1"; gene_id "Ledus.S1G019400"
Ledus.S1	AUGUSTUS	exon	3426625	3426918	.	+	.	transcript_id "Ledus.S1G019400.t1"; gene_id "Ledus.S1G019400"
Ledus.S1	AUGUSTUS	intron	3426919	3427006	.	+	.	transcript_id "Ledus.S1G019400.t1"; gene_id "Ledus.S1G019400"
Ledus.S1	AUGUSTUS	CDS	3427007	3427439	0.79	+	1	transcript_id "Ledus.S1G019400.t1"; gene_id "Ledus.S1G019400"
Ledus.S1	AUGUSTUS	exon	3427007	3427439	.	+	.	transcript_id "Ledus.S1G019400.t1"; gene_id "Ledus.S1G019400"
Ledus.S1	AUGUSTUS	stop_codon	3427440	3427442	.	+	0	transcript_id "Ledus.S1G019400.t1"; gene_id "Ledus.S1G019400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7601.t1 is derived from g12272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4303551	4305953	.	-	.	Ledus.S5G037900
Ledus.S5	AUGUSTUS	transcript	4303551	4305953	.	-	.	transcript_id "Ledus.S5G037900.t1"; gene_id "Ledus.S5G037900"
Ledus.S5	AUGUSTUS	stop_codon	4303548	4303550	.	-	0	transcript_id "Ledus.S5G037900.t1"; gene_id "Ledus.S5G037900"
Ledus.S5	AUGUSTUS	CDS	4303551	4304083	0.93	-	2	transcript_id "Ledus.S5G037900.t1"; gene_id "Ledus.S5G037900"
Ledus.S5	AUGUSTUS	exon	4303551	4304083	.	-	.	transcript_id "Ledus.S5G037900.t1"; gene_id "Ledus.S5G037900"
Ledus.S5	AUGUSTUS	intron	4304084	4304738	.	-	.	transcript_id "Ledus.S5G037900.t1"; gene_id "Ledus.S5G037900"
Ledus.S5	AUGUSTUS	CDS	4304739	4305093	0.42	-	0	transcript_id "Ledus.S5G037900.t1"; gene_id "Ledus.S5G037900"
Ledus.S5	AUGUSTUS	exon	4304739	4305093	.	-	.	transcript_id "Ledus.S5G037900.t1"; gene_id "Ledus.S5G037900"
Ledus.S5	AUGUSTUS	intron	4305094	4305218	.	-	.	transcript_id "Ledus.S5G037900.t1"; gene_id "Ledus.S5G037900"
Ledus.S5	AUGUSTUS	CDS	4305219	4305953	0.45	-	0	transcript_id "Ledus.S5G037900.t1"; gene_id "Ledus.S5G037900"
Ledus.S5	AUGUSTUS	exon	4305219	4305953	.	-	.	transcript_id "Ledus.S5G037900.t1"; gene_id "Ledus.S5G037900"
Ledus.S5	AUGUSTUS	start_codon	4305951	4305953	.	-	0	transcript_id "Ledus.S5G037900.t1"; gene_id "Ledus.S5G037900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12448.t1 is derived from g6069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12042230	12045110	.	+	.	Ledus.S4G160400
Ledus.S4	AUGUSTUS	transcript	12042230	12045110	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	start_codon	12042230	12042232	.	+	0	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	CDS	12042230	12042258	0.75	+	0	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	exon	12042230	12042258	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	intron	12042259	12042762	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	CDS	12042763	12042774	1	+	1	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	exon	12042763	12042774	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	intron	12042775	12043062	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	CDS	12043063	12043095	1	+	1	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	exon	12043063	12043095	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	intron	12043096	12043222	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	CDS	12043223	12043603	1	+	1	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	exon	12043223	12043603	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	intron	12043604	12043806	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	CDS	12043807	12043849	1	+	1	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	exon	12043807	12043849	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	intron	12043850	12044065	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	CDS	12044066	12044122	1	+	0	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	exon	12044066	12044122	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	intron	12044123	12044316	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	CDS	12044317	12044431	1	+	0	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	exon	12044317	12044431	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	intron	12044432	12044587	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	CDS	12044588	12044705	1	+	2	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	exon	12044588	12044705	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	intron	12044706	12044791	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	CDS	12044792	12044891	0.71	+	1	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	exon	12044792	12044891	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	intron	12044892	12044999	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	CDS	12045000	12045110	0.95	+	0	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	exon	12045000	12045110	.	+	.	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
Ledus.S4	AUGUSTUS	stop_codon	12045111	12045113	.	+	0	transcript_id "Ledus.S4G160400.t1"; gene_id "Ledus.S4G160400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4978.t1 is derived from g2416.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20952821	20957804	.	+	.	Ledus.S1G239900
Ledus.S1	AUGUSTUS	transcript	20952821	20957804	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	start_codon	20952821	20952823	.	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20952821	20952847	0.46	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20952821	20952847	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20952848	20952996	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20952997	20953119	0.95	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20952997	20953119	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20953120	20953231	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20953232	20953481	0.94	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20953232	20953481	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20953482	20953596	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20953597	20954234	0.99	+	2	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20953597	20954234	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20954235	20954410	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20954411	20955376	0.99	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20954411	20955376	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20955377	20955511	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20955512	20955846	1	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20955512	20955846	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20955847	20955928	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20955929	20956207	1	+	1	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20955929	20956207	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20956208	20956331	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20956332	20956584	0.9	+	1	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20956332	20956584	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20956585	20956692	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20956693	20956863	0.9	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20956693	20956863	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20956864	20956962	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20956963	20957055	1	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20956963	20957055	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20957056	20957151	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20957152	20957259	1	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20957152	20957259	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20957260	20957343	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20957344	20957460	1	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20957344	20957460	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20957461	20957547	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20957548	20957637	1	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20957548	20957637	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	intron	20957638	20957723	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	CDS	20957724	20957804	1	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	exon	20957724	20957804	.	+	.	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
Ledus.S1	AUGUSTUS	stop_codon	20957805	20957807	.	+	0	transcript_id "Ledus.S1G239900.t1"; gene_id "Ledus.S1G239900"
# This transcript jg1041.t2 is derived from g7902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1042.t1 is derived from g7903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6930960	6933743	.	-	.	Ledus.S2G092400
Ledus.S2	AUGUSTUS	transcript	6930960	6933743	.	-	.	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	stop_codon	6930957	6930959	.	-	0	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	CDS	6930960	6930974	0.92	-	0	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	exon	6930960	6930974	.	-	.	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	intron	6930975	6931069	.	-	.	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	CDS	6931070	6932747	0.52	-	1	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	exon	6931070	6932747	.	-	.	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	intron	6932748	6932836	.	-	.	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	CDS	6932837	6932905	0.94	-	1	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	exon	6932837	6932905	.	-	.	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	intron	6932906	6933231	.	-	.	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	CDS	6933232	6933242	1	-	0	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	exon	6933232	6933242	.	-	.	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	intron	6933243	6933386	.	-	.	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	CDS	6933387	6933605	1	-	0	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	exon	6933387	6933605	.	-	.	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	intron	6933606	6933692	.	-	.	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	CDS	6933693	6933743	1	-	0	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	exon	6933693	6933743	.	-	.	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
Ledus.S2	AUGUSTUS	start_codon	6933741	6933743	.	-	0	transcript_id "Ledus.S2G092400.t1"; gene_id "Ledus.S2G092400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9192.t1 is derived from g10222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5305304	5307028	.	+	.	Ledus.S3G066900
Ledus.S3	AUGUSTUS	transcript	5305304	5307028	.	+	.	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	start_codon	5305304	5305306	.	+	0	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	CDS	5305304	5306080	0.72	+	0	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	exon	5305304	5306080	.	+	.	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	intron	5306081	5306165	.	+	.	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	CDS	5306166	5306256	1	+	0	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	exon	5306166	5306256	.	+	.	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	intron	5306257	5306344	.	+	.	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	CDS	5306345	5306404	1	+	2	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	exon	5306345	5306404	.	+	.	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	intron	5306405	5306564	.	+	.	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	CDS	5306565	5306683	1	+	2	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	exon	5306565	5306683	.	+	.	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	intron	5306684	5306770	.	+	.	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	CDS	5306771	5306905	1	+	0	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	exon	5306771	5306905	.	+	.	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	intron	5306906	5306995	.	+	.	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	CDS	5306996	5307028	1	+	0	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	exon	5306996	5307028	.	+	.	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
Ledus.S3	AUGUSTUS	stop_codon	5307029	5307031	.	+	0	transcript_id "Ledus.S3G066900.t1"; gene_id "Ledus.S3G066900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11441.t1 is derived from g5059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4334199	4335983	.	+	.	Ledus.S4G059700
Ledus.S4	AUGUSTUS	transcript	4334199	4335983	.	+	.	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	start_codon	4334199	4334201	.	+	0	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	CDS	4334199	4334587	0.91	+	0	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	exon	4334199	4334587	.	+	.	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	intron	4334588	4334704	.	+	.	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	CDS	4334705	4334757	1	+	1	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	exon	4334705	4334757	.	+	.	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	intron	4334758	4334902	.	+	.	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	CDS	4334903	4334967	1	+	2	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	exon	4334903	4334967	.	+	.	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	intron	4334968	4335250	.	+	.	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	CDS	4335251	4335329	1	+	0	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	exon	4335251	4335329	.	+	.	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	intron	4335330	4335414	.	+	.	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	CDS	4335415	4335741	0.97	+	2	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	exon	4335415	4335741	.	+	.	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	intron	4335742	4335831	.	+	.	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	CDS	4335832	4335983	0.97	+	2	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	exon	4335832	4335983	.	+	.	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	stop_codon	4335984	4335986	.	+	0	transcript_id "Ledus.S4G059700.t1"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	transcript	4334199	4335983	.	+	.	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	start_codon	4334199	4334201	.	+	0	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	CDS	4334199	4334447	0.73	+	0	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	exon	4334199	4334447	.	+	.	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	intron	4334448	4334574	.	+	.	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	CDS	4334575	4334587	0.83	+	0	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	exon	4334575	4334587	.	+	.	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	intron	4334588	4334902	.	+	.	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	CDS	4334903	4334967	1	+	2	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	exon	4334903	4334967	.	+	.	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	intron	4334968	4335250	.	+	.	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	CDS	4335251	4335329	1	+	0	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	exon	4335251	4335329	.	+	.	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	intron	4335330	4335414	.	+	.	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	CDS	4335415	4335741	0.97	+	2	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	exon	4335415	4335741	.	+	.	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	intron	4335742	4335831	.	+	.	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	CDS	4335832	4335983	0.98	+	2	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	exon	4335832	4335983	.	+	.	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
Ledus.S4	AUGUSTUS	stop_codon	4335984	4335986	.	+	0	transcript_id "Ledus.S4G059700.t2"; gene_id "Ledus.S4G059700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7551.t1 is derived from g12222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3988783	3989906	.	+	.	Ledus.S5G032900
Ledus.S5	AUGUSTUS	transcript	3988783	3989906	.	+	.	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	start_codon	3988783	3988785	.	+	0	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	CDS	3988783	3989198	0.32	+	0	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	exon	3988783	3989198	.	+	.	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	intron	3989199	3989331	.	+	.	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	CDS	3989332	3989370	0.36	+	1	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	exon	3989332	3989370	.	+	.	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	intron	3989371	3989457	.	+	.	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	CDS	3989458	3989542	0.75	+	1	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	exon	3989458	3989542	.	+	.	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	intron	3989543	3989777	.	+	.	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	CDS	3989778	3989906	0.3	+	0	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	exon	3989778	3989906	.	+	.	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
Ledus.S5	AUGUSTUS	stop_codon	3989907	3989909	.	+	0	transcript_id "Ledus.S5G032900.t1"; gene_id "Ledus.S5G032900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8361.t1 is derived from g13033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11084639	11087560	.	-	.	Ledus.S5G113900
Ledus.S5	AUGUSTUS	transcript	11084639	11087560	.	-	.	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	stop_codon	11084636	11084638	.	-	0	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	CDS	11084639	11086546	0.94	-	0	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	exon	11084639	11086546	.	-	.	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	intron	11086547	11086627	.	-	.	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	CDS	11086628	11086855	1	-	0	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	exon	11086628	11086855	.	-	.	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	intron	11086856	11086949	.	-	.	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	CDS	11086950	11087011	1	-	2	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	exon	11086950	11087011	.	-	.	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	intron	11087012	11087105	.	-	.	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	CDS	11087106	11087217	1	-	0	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	exon	11087106	11087217	.	-	.	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	intron	11087218	11087299	.	-	.	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	CDS	11087300	11087434	1	-	0	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	exon	11087300	11087434	.	-	.	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	intron	11087435	11087527	.	-	.	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	CDS	11087528	11087560	0.98	-	0	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	exon	11087528	11087560	.	-	.	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
Ledus.S5	AUGUSTUS	start_codon	11087558	11087560	.	-	0	transcript_id "Ledus.S5G113900.t1"; gene_id "Ledus.S5G113900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8022.t1 is derived from g12693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8564519	8565727	.	-	.	Ledus.S5G080000
Ledus.S5	AUGUSTUS	transcript	8564519	8565727	.	-	.	transcript_id "Ledus.S5G080000.t1"; gene_id "Ledus.S5G080000"
Ledus.S5	AUGUSTUS	stop_codon	8564516	8564518	.	-	0	transcript_id "Ledus.S5G080000.t1"; gene_id "Ledus.S5G080000"
Ledus.S5	AUGUSTUS	CDS	8564519	8564929	0.51	-	0	transcript_id "Ledus.S5G080000.t1"; gene_id "Ledus.S5G080000"
Ledus.S5	AUGUSTUS	exon	8564519	8564929	.	-	.	transcript_id "Ledus.S5G080000.t1"; gene_id "Ledus.S5G080000"
Ledus.S5	AUGUSTUS	intron	8564930	8564986	.	-	.	transcript_id "Ledus.S5G080000.t1"; gene_id "Ledus.S5G080000"
Ledus.S5	AUGUSTUS	CDS	8564987	8565292	0.55	-	0	transcript_id "Ledus.S5G080000.t1"; gene_id "Ledus.S5G080000"
Ledus.S5	AUGUSTUS	exon	8564987	8565292	.	-	.	transcript_id "Ledus.S5G080000.t1"; gene_id "Ledus.S5G080000"
Ledus.S5	AUGUSTUS	intron	8565293	8565370	.	-	.	transcript_id "Ledus.S5G080000.t1"; gene_id "Ledus.S5G080000"
Ledus.S5	AUGUSTUS	CDS	8565371	8565727	0.22	-	0	transcript_id "Ledus.S5G080000.t1"; gene_id "Ledus.S5G080000"
Ledus.S5	AUGUSTUS	exon	8565371	8565727	.	-	.	transcript_id "Ledus.S5G080000.t1"; gene_id "Ledus.S5G080000"
Ledus.S5	AUGUSTUS	start_codon	8565725	8565727	.	-	0	transcript_id "Ledus.S5G080000.t1"; gene_id "Ledus.S5G080000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5571.t1 is derived from g3010.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25184650	25185420	.	+	.	Ledus.S1G299200
Ledus.S1	AUGUSTUS	transcript	25184650	25185420	.	+	.	transcript_id "Ledus.S1G299200.t1"; gene_id "Ledus.S1G299200"
Ledus.S1	AUGUSTUS	start_codon	25184650	25184652	.	+	0	transcript_id "Ledus.S1G299200.t1"; gene_id "Ledus.S1G299200"
Ledus.S1	AUGUSTUS	CDS	25184650	25184901	1	+	0	transcript_id "Ledus.S1G299200.t1"; gene_id "Ledus.S1G299200"
Ledus.S1	AUGUSTUS	exon	25184650	25184901	.	+	.	transcript_id "Ledus.S1G299200.t1"; gene_id "Ledus.S1G299200"
Ledus.S1	AUGUSTUS	intron	25184902	25184980	.	+	.	transcript_id "Ledus.S1G299200.t1"; gene_id "Ledus.S1G299200"
Ledus.S1	AUGUSTUS	CDS	25184981	25185103	1	+	0	transcript_id "Ledus.S1G299200.t1"; gene_id "Ledus.S1G299200"
Ledus.S1	AUGUSTUS	exon	25184981	25185103	.	+	.	transcript_id "Ledus.S1G299200.t1"; gene_id "Ledus.S1G299200"
Ledus.S1	AUGUSTUS	intron	25185104	25185183	.	+	.	transcript_id "Ledus.S1G299200.t1"; gene_id "Ledus.S1G299200"
Ledus.S1	AUGUSTUS	CDS	25185184	25185420	0.59	+	0	transcript_id "Ledus.S1G299200.t1"; gene_id "Ledus.S1G299200"
Ledus.S1	AUGUSTUS	exon	25185184	25185420	.	+	.	transcript_id "Ledus.S1G299200.t1"; gene_id "Ledus.S1G299200"
Ledus.S1	AUGUSTUS	stop_codon	25185421	25185423	.	+	0	transcript_id "Ledus.S1G299200.t1"; gene_id "Ledus.S1G299200"
# This transcript jg5104.t2 is derived from g2543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5105.t1 is derived from g2544.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21752622	21754233	.	+	.	Ledus.S1G252600
Ledus.S1	AUGUSTUS	transcript	21752622	21754233	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	start_codon	21752622	21752624	.	+	0	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	CDS	21752622	21752699	0.5	+	0	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	exon	21752622	21752699	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	intron	21752700	21752811	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	CDS	21752812	21752853	0.46	+	0	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	exon	21752812	21752853	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	intron	21752854	21752949	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	CDS	21752950	21753043	1	+	0	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	exon	21752950	21753043	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	intron	21753044	21753139	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	CDS	21753140	21753337	1	+	2	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	exon	21753140	21753337	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	intron	21753338	21753419	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	CDS	21753420	21753872	0.68	+	2	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	exon	21753420	21753872	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	intron	21753873	21754015	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	CDS	21754016	21754068	0.68	+	2	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	exon	21754016	21754068	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	intron	21754069	21754197	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	CDS	21754198	21754233	0.68	+	0	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	exon	21754198	21754233	.	+	.	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
Ledus.S1	AUGUSTUS	stop_codon	21754234	21754236	.	+	0	transcript_id "Ledus.S1G252600.t1"; gene_id "Ledus.S1G252600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11003.t1 is derived from g4621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1069033	1071538	.	+	.	Ledus.S4G015900
Ledus.S4	AUGUSTUS	transcript	1069033	1070570	.	+	.	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	start_codon	1069033	1069035	.	+	0	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1069033	1069170	0.79	+	0	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1069033	1069170	.	+	.	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	intron	1069171	1069383	.	+	.	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1069384	1069493	1	+	0	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1069384	1069493	.	+	.	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	intron	1069494	1069598	.	+	.	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1069599	1069869	1	+	1	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1069599	1069869	.	+	.	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	intron	1069870	1069961	.	+	.	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1069962	1070076	1	+	0	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1069962	1070076	.	+	.	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	intron	1070077	1070169	.	+	.	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1070170	1070570	0.87	+	2	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1070170	1070570	.	+	.	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	stop_codon	1070571	1070573	.	+	0	transcript_id "Ledus.S4G015900.t1"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	transcript	1069033	1071538	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	start_codon	1069033	1069035	.	+	0	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1069033	1069170	0.64	+	0	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1069033	1069170	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	intron	1069171	1069383	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1069384	1069493	1	+	0	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1069384	1069493	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	intron	1069494	1069598	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1069599	1069869	0.97	+	1	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1069599	1069869	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	intron	1069870	1069961	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1069962	1070076	0.97	+	0	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1069962	1070076	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	intron	1070077	1070169	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1070170	1070518	0.93	+	2	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1070170	1070518	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	intron	1070519	1070652	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1070653	1071024	0.95	+	1	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1070653	1071024	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	intron	1071025	1071136	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1071137	1071215	0.98	+	1	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1071137	1071215	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	intron	1071216	1071331	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	CDS	1071332	1071538	0.69	+	0	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	exon	1071332	1071538	.	+	.	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
Ledus.S4	AUGUSTUS	stop_codon	1071539	1071541	.	+	0	transcript_id "Ledus.S4G015900.t2"; gene_id "Ledus.S4G015900"
# This transcript jg5830.t2 is derived from g3272.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5831.t1 is derived from g3273.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27200417	27203702	.	-	.	Ledus.S1G325200
Ledus.S1	AUGUSTUS	transcript	27200417	27203152	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	stop_codon	27200414	27200416	.	-	0	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27200417	27200708	1	-	1	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27200417	27200708	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27200709	27200805	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27200806	27200909	0.95	-	0	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27200806	27200909	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27200910	27201025	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27201026	27201181	0.91	-	0	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27201026	27201181	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27201182	27201264	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27201265	27201385	1	-	1	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27201265	27201385	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27201386	27201472	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27201473	27201534	1	-	0	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27201473	27201534	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27201535	27201726	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27201727	27201783	1	-	0	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27201727	27201783	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27201784	27201935	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27201936	27202001	1	-	0	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27201936	27202001	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27202002	27202100	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27202101	27202145	1	-	0	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27202101	27202145	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27202146	27202273	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27202274	27202315	1	-	0	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27202274	27202315	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27202316	27202478	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27202479	27202565	1	-	0	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27202479	27202565	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27202566	27202795	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27202796	27203152	0.43	-	0	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27202796	27203152	.	-	.	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	start_codon	27203150	27203152	.	-	0	transcript_id "Ledus.S1G325200.t1"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	transcript	27200417	27203702	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	stop_codon	27200414	27200416	.	-	0	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27200417	27200708	0.97	-	1	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27200417	27200708	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27200709	27200805	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27200806	27200909	0.99	-	0	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27200806	27200909	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27200910	27201025	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27201026	27201181	0.97	-	0	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27201026	27201181	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27201182	27201264	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27201265	27201385	1	-	1	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27201265	27201385	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27201386	27201472	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27201473	27201534	1	-	0	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27201473	27201534	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27201535	27201726	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27201727	27201783	1	-	0	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27201727	27201783	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27201784	27201935	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27201936	27202001	1	-	0	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27201936	27202001	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27202002	27202100	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27202101	27202145	1	-	0	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27202101	27202145	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27202146	27202273	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27202274	27202315	1	-	0	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27202274	27202315	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27202316	27202478	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27202479	27202565	1	-	0	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27202479	27202565	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27202566	27202795	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27202796	27203329	0.74	-	0	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27202796	27203329	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	intron	27203330	27203645	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	CDS	27203646	27203702	0.74	-	0	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	exon	27203646	27203702	.	-	.	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
Ledus.S1	AUGUSTUS	start_codon	27203700	27203702	.	-	0	transcript_id "Ledus.S1G325200.t2"; gene_id "Ledus.S1G325200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8552.t1 is derived from g9582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	135220	137800	.	-	.	Ledus.S3G002900
Ledus.S3	AUGUSTUS	transcript	135220	137800	.	-	.	transcript_id "Ledus.S3G002900.t1"; gene_id "Ledus.S3G002900"
Ledus.S3	AUGUSTUS	stop_codon	135217	135219	.	-	0	transcript_id "Ledus.S3G002900.t1"; gene_id "Ledus.S3G002900"
Ledus.S3	AUGUSTUS	CDS	135220	137661	0.97	-	0	transcript_id "Ledus.S3G002900.t1"; gene_id "Ledus.S3G002900"
Ledus.S3	AUGUSTUS	exon	135220	137661	.	-	.	transcript_id "Ledus.S3G002900.t1"; gene_id "Ledus.S3G002900"
Ledus.S3	AUGUSTUS	intron	137662	137740	.	-	.	transcript_id "Ledus.S3G002900.t1"; gene_id "Ledus.S3G002900"
Ledus.S3	AUGUSTUS	CDS	137741	137800	0.71	-	0	transcript_id "Ledus.S3G002900.t1"; gene_id "Ledus.S3G002900"
Ledus.S3	AUGUSTUS	exon	137741	137800	.	-	.	transcript_id "Ledus.S3G002900.t1"; gene_id "Ledus.S3G002900"
Ledus.S3	AUGUSTUS	start_codon	137798	137800	.	-	0	transcript_id "Ledus.S3G002900.t1"; gene_id "Ledus.S3G002900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7522.t1 is derived from g12193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3573601	3576999	.	-	.	Ledus.S5G030000
Ledus.S5	AUGUSTUS	transcript	3573601	3576999	.	-	.	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	stop_codon	3573598	3573600	.	-	0	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	CDS	3573601	3573776	0.97	-	2	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	exon	3573601	3573776	.	-	.	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	intron	3573777	3573885	.	-	.	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	CDS	3573886	3574645	0.41	-	0	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	exon	3573886	3574645	.	-	.	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	intron	3574646	3574774	.	-	.	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	CDS	3574775	3576628	1	-	0	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	exon	3574775	3576628	.	-	.	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	intron	3576629	3576972	.	-	.	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	CDS	3576973	3576999	1	-	0	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	exon	3576973	3576999	.	-	.	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
Ledus.S5	AUGUSTUS	start_codon	3576997	3576999	.	-	0	transcript_id "Ledus.S5G030000.t1"; gene_id "Ledus.S5G030000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12391.t1 is derived from g6012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11607230	11609190	.	+	.	Ledus.S4G154700
Ledus.S4	AUGUSTUS	transcript	11607230	11609190	.	+	.	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	start_codon	11607230	11607232	.	+	0	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	CDS	11607230	11608249	0.94	+	0	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	exon	11607230	11608249	.	+	.	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	intron	11608250	11608340	.	+	.	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	CDS	11608341	11608480	0.99	+	0	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	exon	11608341	11608480	.	+	.	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	intron	11608481	11608563	.	+	.	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	CDS	11608564	11608845	0.82	+	1	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	exon	11608564	11608845	.	+	.	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	intron	11608846	11608937	.	+	.	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	CDS	11608938	11609190	0.86	+	1	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	exon	11608938	11609190	.	+	.	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
Ledus.S4	AUGUSTUS	stop_codon	11609191	11609193	.	+	0	transcript_id "Ledus.S4G154700.t1"; gene_id "Ledus.S4G154700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6561.t1 is derived from g4004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32403598	32407418	.	+	.	Ledus.S1G398200
Ledus.S1	AUGUSTUS	transcript	32403598	32407418	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	start_codon	32403598	32403600	.	+	0	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32403598	32403673	0.41	+	0	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32403598	32403673	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32403674	32404086	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32404087	32404338	1	+	2	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32404087	32404338	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32404339	32404457	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32404458	32404603	1	+	2	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32404458	32404603	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32404604	32404705	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32404706	32404777	1	+	0	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32404706	32404777	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32404778	32404860	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32404861	32404941	1	+	0	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32404861	32404941	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32404942	32405067	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32405068	32405184	1	+	0	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32405068	32405184	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32405185	32405281	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32405282	32405342	1	+	0	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32405282	32405342	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32405343	32405510	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32405511	32405586	1	+	2	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32405511	32405586	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32405587	32405669	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32405670	32405743	1	+	1	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32405670	32405743	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32405744	32405819	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32405820	32405963	0.5	+	2	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32405820	32405963	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32405964	32406102	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32406103	32406223	0.65	+	2	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32406103	32406223	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32406224	32406318	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32406319	32406387	0.68	+	1	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32406319	32406387	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32406388	32406464	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32406465	32406969	0.86	+	1	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32406465	32406969	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	intron	32406970	32407250	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	CDS	32407251	32407418	0.56	+	0	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	exon	32407251	32407418	.	+	.	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
Ledus.S1	AUGUSTUS	stop_codon	32407419	32407421	.	+	0	transcript_id "Ledus.S1G398200.t1"; gene_id "Ledus.S1G398200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12313.t1 is derived from g5934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11176111	11176848	.	+	.	Ledus.S4G146900
Ledus.S4	AUGUSTUS	transcript	11176111	11176848	.	+	.	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	start_codon	11176111	11176113	.	+	0	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	CDS	11176111	11176179	0.61	+	0	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	exon	11176111	11176179	.	+	.	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	intron	11176180	11176268	.	+	.	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	CDS	11176269	11176350	1	+	0	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	exon	11176269	11176350	.	+	.	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	intron	11176351	11176426	.	+	.	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	CDS	11176427	11176483	1	+	2	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	exon	11176427	11176483	.	+	.	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	intron	11176484	11176569	.	+	.	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	CDS	11176570	11176710	1	+	2	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	exon	11176570	11176710	.	+	.	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	intron	11176711	11176792	.	+	.	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	CDS	11176793	11176848	1	+	2	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	exon	11176793	11176848	.	+	.	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
Ledus.S4	AUGUSTUS	stop_codon	11176849	11176851	.	+	0	transcript_id "Ledus.S4G146900.t1"; gene_id "Ledus.S4G146900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4902.t1 is derived from g2340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20589300	20589851	.	-	.	Ledus.S1G232300
Ledus.S1	AUGUSTUS	transcript	20589300	20589851	.	-	.	transcript_id "Ledus.S1G232300.t1"; gene_id "Ledus.S1G232300"
Ledus.S1	AUGUSTUS	stop_codon	20589297	20589299	.	-	0	transcript_id "Ledus.S1G232300.t1"; gene_id "Ledus.S1G232300"
Ledus.S1	AUGUSTUS	CDS	20589300	20589851	0.93	-	0	transcript_id "Ledus.S1G232300.t1"; gene_id "Ledus.S1G232300"
Ledus.S1	AUGUSTUS	exon	20589300	20589851	.	-	.	transcript_id "Ledus.S1G232300.t1"; gene_id "Ledus.S1G232300"
Ledus.S1	AUGUSTUS	start_codon	20589849	20589851	.	-	0	transcript_id "Ledus.S1G232300.t1"; gene_id "Ledus.S1G232300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4058.t1 is derived from g1494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14371068	14372224	.	-	.	Ledus.S1G147900
Ledus.S1	AUGUSTUS	transcript	14371068	14372224	.	-	.	transcript_id "Ledus.S1G147900.t1"; gene_id "Ledus.S1G147900"
Ledus.S1	AUGUSTUS	stop_codon	14371065	14371067	.	-	0	transcript_id "Ledus.S1G147900.t1"; gene_id "Ledus.S1G147900"
Ledus.S1	AUGUSTUS	CDS	14371068	14372053	1	-	2	transcript_id "Ledus.S1G147900.t1"; gene_id "Ledus.S1G147900"
Ledus.S1	AUGUSTUS	exon	14371068	14372053	.	-	.	transcript_id "Ledus.S1G147900.t1"; gene_id "Ledus.S1G147900"
Ledus.S1	AUGUSTUS	intron	14372054	14372139	.	-	.	transcript_id "Ledus.S1G147900.t1"; gene_id "Ledus.S1G147900"
Ledus.S1	AUGUSTUS	CDS	14372140	14372224	0.74	-	0	transcript_id "Ledus.S1G147900.t1"; gene_id "Ledus.S1G147900"
Ledus.S1	AUGUSTUS	exon	14372140	14372224	.	-	.	transcript_id "Ledus.S1G147900.t1"; gene_id "Ledus.S1G147900"
Ledus.S1	AUGUSTUS	start_codon	14372222	14372224	.	-	0	transcript_id "Ledus.S1G147900.t1"; gene_id "Ledus.S1G147900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg572.t1 is derived from g7433.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3411311	3412174	.	-	.	Ledus.S2G045400
Ledus.S2	AUGUSTUS	transcript	3411311	3412174	.	-	.	transcript_id "Ledus.S2G045400.t1"; gene_id "Ledus.S2G045400"
Ledus.S2	AUGUSTUS	stop_codon	3411308	3411310	.	-	0	transcript_id "Ledus.S2G045400.t1"; gene_id "Ledus.S2G045400"
Ledus.S2	AUGUSTUS	CDS	3411311	3411472	0.98	-	0	transcript_id "Ledus.S2G045400.t1"; gene_id "Ledus.S2G045400"
Ledus.S2	AUGUSTUS	exon	3411311	3411472	.	-	.	transcript_id "Ledus.S2G045400.t1"; gene_id "Ledus.S2G045400"
Ledus.S2	AUGUSTUS	intron	3411473	3411820	.	-	.	transcript_id "Ledus.S2G045400.t1"; gene_id "Ledus.S2G045400"
Ledus.S2	AUGUSTUS	CDS	3411821	3412174	0.83	-	0	transcript_id "Ledus.S2G045400.t1"; gene_id "Ledus.S2G045400"
Ledus.S2	AUGUSTUS	exon	3411821	3412174	.	-	.	transcript_id "Ledus.S2G045400.t1"; gene_id "Ledus.S2G045400"
Ledus.S2	AUGUSTUS	start_codon	3412172	3412174	.	-	0	transcript_id "Ledus.S2G045400.t1"; gene_id "Ledus.S2G045400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7066.t1 is derived from g6597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1168000	1170656	.	+	.	Ledus.C7G012700
Ledus.C7	AUGUSTUS	transcript	1168000	1170656	.	+	.	transcript_id "Ledus.C7G012700.t1"; gene_id "Ledus.C7G012700"
Ledus.C7	AUGUSTUS	start_codon	1168000	1168002	.	+	0	transcript_id "Ledus.C7G012700.t1"; gene_id "Ledus.C7G012700"
Ledus.C7	AUGUSTUS	CDS	1168000	1168081	0.89	+	0	transcript_id "Ledus.C7G012700.t1"; gene_id "Ledus.C7G012700"
Ledus.C7	AUGUSTUS	exon	1168000	1168081	.	+	.	transcript_id "Ledus.C7G012700.t1"; gene_id "Ledus.C7G012700"
Ledus.C7	AUGUSTUS	intron	1168082	1168220	.	+	.	transcript_id "Ledus.C7G012700.t1"; gene_id "Ledus.C7G012700"
Ledus.C7	AUGUSTUS	CDS	1168221	1168315	1	+	2	transcript_id "Ledus.C7G012700.t1"; gene_id "Ledus.C7G012700"
Ledus.C7	AUGUSTUS	exon	1168221	1168315	.	+	.	transcript_id "Ledus.C7G012700.t1"; gene_id "Ledus.C7G012700"
Ledus.C7	AUGUSTUS	intron	1168316	1168406	.	+	.	transcript_id "Ledus.C7G012700.t1"; gene_id "Ledus.C7G012700"
Ledus.C7	AUGUSTUS	CDS	1168407	1170656	0.95	+	0	transcript_id "Ledus.C7G012700.t1"; gene_id "Ledus.C7G012700"
Ledus.C7	AUGUSTUS	exon	1168407	1170656	.	+	.	transcript_id "Ledus.C7G012700.t1"; gene_id "Ledus.C7G012700"
Ledus.C7	AUGUSTUS	stop_codon	1170657	1170659	.	+	0	transcript_id "Ledus.C7G012700.t1"; gene_id "Ledus.C7G012700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11393.t1 is derived from g5011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3975207	3976618	.	-	.	Ledus.S4G054900
Ledus.S4	AUGUSTUS	transcript	3975207	3976618	.	-	.	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	stop_codon	3975204	3975206	.	-	0	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	CDS	3975207	3975436	0.71	-	2	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	exon	3975207	3975436	.	-	.	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	intron	3975437	3975517	.	-	.	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	CDS	3975518	3975770	0.91	-	0	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	exon	3975518	3975770	.	-	.	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	intron	3975771	3975844	.	-	.	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	CDS	3975845	3976084	0.98	-	0	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	exon	3975845	3976084	.	-	.	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	intron	3976085	3976152	.	-	.	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	CDS	3976153	3976289	0.87	-	2	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	exon	3976153	3976289	.	-	.	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	intron	3976290	3976365	.	-	.	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	CDS	3976366	3976618	0.48	-	0	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	exon	3976366	3976618	.	-	.	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
Ledus.S4	AUGUSTUS	start_codon	3976616	3976618	.	-	0	transcript_id "Ledus.S4G054900.t1"; gene_id "Ledus.S4G054900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8354.t1 is derived from g13026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11007691	11008288	.	+	.	Ledus.S5G113200
Ledus.S5	AUGUSTUS	transcript	11007691	11008288	.	+	.	transcript_id "Ledus.S5G113200.t1"; gene_id "Ledus.S5G113200"
Ledus.S5	AUGUSTUS	start_codon	11007691	11007693	.	+	0	transcript_id "Ledus.S5G113200.t1"; gene_id "Ledus.S5G113200"
Ledus.S5	AUGUSTUS	CDS	11007691	11008054	0.79	+	0	transcript_id "Ledus.S5G113200.t1"; gene_id "Ledus.S5G113200"
Ledus.S5	AUGUSTUS	exon	11007691	11008054	.	+	.	transcript_id "Ledus.S5G113200.t1"; gene_id "Ledus.S5G113200"
Ledus.S5	AUGUSTUS	intron	11008055	11008142	.	+	.	transcript_id "Ledus.S5G113200.t1"; gene_id "Ledus.S5G113200"
Ledus.S5	AUGUSTUS	CDS	11008143	11008288	0.74	+	2	transcript_id "Ledus.S5G113200.t1"; gene_id "Ledus.S5G113200"
Ledus.S5	AUGUSTUS	exon	11008143	11008288	.	+	.	transcript_id "Ledus.S5G113200.t1"; gene_id "Ledus.S5G113200"
Ledus.S5	AUGUSTUS	stop_codon	11008289	11008291	.	+	0	transcript_id "Ledus.S5G113200.t1"; gene_id "Ledus.S5G113200"
# This transcript jg12835.t2 is derived from g9536.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12836.t1 is derived from g9537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C16	AUGUSTUS	gene	82008	82854	.	+	.	Ledus.C16G000700
Ledus.C16	AUGUSTUS	transcript	82008	82854	.	+	.	transcript_id "Ledus.C16G000700.t1"; gene_id "Ledus.C16G000700"
Ledus.C16	AUGUSTUS	start_codon	82008	82010	.	+	0	transcript_id "Ledus.C16G000700.t1"; gene_id "Ledus.C16G000700"
Ledus.C16	AUGUSTUS	CDS	82008	82049	0.86	+	0	transcript_id "Ledus.C16G000700.t1"; gene_id "Ledus.C16G000700"
Ledus.C16	AUGUSTUS	exon	82008	82049	.	+	.	transcript_id "Ledus.C16G000700.t1"; gene_id "Ledus.C16G000700"
Ledus.C16	AUGUSTUS	intron	82050	82144	.	+	.	transcript_id "Ledus.C16G000700.t1"; gene_id "Ledus.C16G000700"
Ledus.C16	AUGUSTUS	CDS	82145	82261	0.93	+	0	transcript_id "Ledus.C16G000700.t1"; gene_id "Ledus.C16G000700"
Ledus.C16	AUGUSTUS	exon	82145	82261	.	+	.	transcript_id "Ledus.C16G000700.t1"; gene_id "Ledus.C16G000700"
Ledus.C16	AUGUSTUS	intron	82262	82497	.	+	.	transcript_id "Ledus.C16G000700.t1"; gene_id "Ledus.C16G000700"
Ledus.C16	AUGUSTUS	CDS	82498	82854	0.23	+	0	transcript_id "Ledus.C16G000700.t1"; gene_id "Ledus.C16G000700"
Ledus.C16	AUGUSTUS	exon	82498	82854	.	+	.	transcript_id "Ledus.C16G000700.t1"; gene_id "Ledus.C16G000700"
Ledus.C16	AUGUSTUS	stop_codon	82855	82857	.	+	0	transcript_id "Ledus.C16G000700.t1"; gene_id "Ledus.C16G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2642.t1 is derived from g75.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1119293	1121168	.	+	.	Ledus.S1G006300
Ledus.S1	AUGUSTUS	transcript	1119293	1121168	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	start_codon	1119293	1119295	.	+	0	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	CDS	1119293	1119406	1	+	0	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	exon	1119293	1119406	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	intron	1119407	1119615	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	CDS	1119616	1119723	1	+	0	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	exon	1119616	1119723	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	intron	1119724	1119840	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	CDS	1119841	1119875	1	+	0	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	exon	1119841	1119875	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	intron	1119876	1119998	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	CDS	1119999	1120111	0.99	+	1	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	exon	1119999	1120111	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	intron	1120112	1120222	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	CDS	1120223	1120484	0.74	+	2	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	exon	1120223	1120484	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	intron	1120485	1120599	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	CDS	1120600	1120868	0.93	+	1	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	exon	1120600	1120868	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	intron	1120869	1120971	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	CDS	1120972	1121066	0.92	+	2	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	exon	1120972	1121066	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	intron	1121067	1121150	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	CDS	1121151	1121168	1	+	0	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	exon	1121151	1121168	.	+	.	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
Ledus.S1	AUGUSTUS	stop_codon	1121169	1121171	.	+	0	transcript_id "Ledus.S1G006300.t1"; gene_id "Ledus.S1G006300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2651.t1 is derived from g84.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1205949	1211475	.	+	.	Ledus.S1G007200
Ledus.S1	AUGUSTUS	transcript	1205949	1211475	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	start_codon	1205949	1205951	.	+	0	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	CDS	1205949	1206381	0.81	+	0	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	exon	1205949	1206381	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	intron	1206382	1206490	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	CDS	1206491	1206942	1	+	2	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	exon	1206491	1206942	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	intron	1206943	1207195	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	CDS	1207196	1207401	1	+	0	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	exon	1207196	1207401	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	intron	1207402	1207522	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	CDS	1207523	1207649	1	+	1	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	exon	1207523	1207649	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	intron	1207650	1207805	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	CDS	1207806	1207874	1	+	0	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	exon	1207806	1207874	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	intron	1207875	1208059	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	CDS	1208060	1208236	1	+	0	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	exon	1208060	1208236	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	intron	1208237	1208401	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	CDS	1208402	1208503	1	+	0	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	exon	1208402	1208503	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	intron	1208504	1208653	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	CDS	1208654	1208961	0.89	+	0	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	exon	1208654	1208961	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	intron	1208962	1209055	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	CDS	1209056	1209169	1	+	1	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	exon	1209056	1209169	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	intron	1209170	1209357	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	CDS	1209358	1210687	0.99	+	1	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	exon	1209358	1210687	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	intron	1210688	1210857	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	CDS	1210858	1210980	1	+	0	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	exon	1210858	1210980	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	intron	1210981	1211103	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	CDS	1211104	1211475	0.95	+	0	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	exon	1211104	1211475	.	+	.	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
Ledus.S1	AUGUSTUS	stop_codon	1211476	1211478	.	+	0	transcript_id "Ledus.S1G007200.t1"; gene_id "Ledus.S1G007200"
# This transcript jg3656.t2 is derived from g1092.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3657.t1 is derived from g1093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10463851	10464063	.	-	.	Ledus.S1G107800
Ledus.S1	AUGUSTUS	transcript	10463851	10464063	.	-	.	transcript_id "Ledus.S1G107800.t1"; gene_id "Ledus.S1G107800"
Ledus.S1	AUGUSTUS	stop_codon	10463848	10463850	.	-	0	transcript_id "Ledus.S1G107800.t1"; gene_id "Ledus.S1G107800"
Ledus.S1	AUGUSTUS	CDS	10463851	10464063	0.92	-	0	transcript_id "Ledus.S1G107800.t1"; gene_id "Ledus.S1G107800"
Ledus.S1	AUGUSTUS	exon	10463851	10464063	.	-	.	transcript_id "Ledus.S1G107800.t1"; gene_id "Ledus.S1G107800"
Ledus.S1	AUGUSTUS	start_codon	10464061	10464063	.	-	0	transcript_id "Ledus.S1G107800.t1"; gene_id "Ledus.S1G107800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3651.t1 is derived from g1087.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10422403	10424298	.	+	.	Ledus.S1G107200
Ledus.S1	AUGUSTUS	transcript	10422403	10424298	.	+	.	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	start_codon	10422403	10422405	.	+	0	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	CDS	10422403	10422765	0.79	+	0	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	exon	10422403	10422765	.	+	.	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	intron	10422766	10422850	.	+	.	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	CDS	10422851	10423054	0.98	+	0	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	exon	10422851	10423054	.	+	.	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	intron	10423055	10423144	.	+	.	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	CDS	10423145	10423513	0.98	+	0	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	exon	10423145	10423513	.	+	.	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	intron	10423514	10423599	.	+	.	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	CDS	10423600	10424298	1	+	0	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	exon	10423600	10424298	.	+	.	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
Ledus.S1	AUGUSTUS	stop_codon	10424299	10424301	.	+	0	transcript_id "Ledus.S1G107200.t1"; gene_id "Ledus.S1G107200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11821.t1 is derived from g5440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6975784	6976548	.	+	.	Ledus.S4G097700
Ledus.S4	AUGUSTUS	transcript	6975784	6976283	.	+	.	transcript_id "Ledus.S4G097700.t1"; gene_id "Ledus.S4G097700"
Ledus.S4	AUGUSTUS	start_codon	6975784	6975786	.	+	0	transcript_id "Ledus.S4G097700.t1"; gene_id "Ledus.S4G097700"
Ledus.S4	AUGUSTUS	CDS	6975784	6976189	0.62	+	0	transcript_id "Ledus.S4G097700.t1"; gene_id "Ledus.S4G097700"
Ledus.S4	AUGUSTUS	exon	6975784	6976189	.	+	.	transcript_id "Ledus.S4G097700.t1"; gene_id "Ledus.S4G097700"
Ledus.S4	AUGUSTUS	intron	6976190	6976275	.	+	.	transcript_id "Ledus.S4G097700.t1"; gene_id "Ledus.S4G097700"
Ledus.S4	AUGUSTUS	CDS	6976276	6976283	0.93	+	2	transcript_id "Ledus.S4G097700.t1"; gene_id "Ledus.S4G097700"
Ledus.S4	AUGUSTUS	exon	6976276	6976283	.	+	.	transcript_id "Ledus.S4G097700.t1"; gene_id "Ledus.S4G097700"
Ledus.S4	AUGUSTUS	stop_codon	6976284	6976286	.	+	0	transcript_id "Ledus.S4G097700.t1"; gene_id "Ledus.S4G097700"
Ledus.S4	AUGUSTUS	transcript	6975784	6976548	.	+	.	transcript_id "Ledus.S4G097700.t2"; gene_id "Ledus.S4G097700"
Ledus.S4	AUGUSTUS	start_codon	6975784	6975786	.	+	0	transcript_id "Ledus.S4G097700.t2"; gene_id "Ledus.S4G097700"
Ledus.S4	AUGUSTUS	CDS	6975784	6976548	0.6	+	0	transcript_id "Ledus.S4G097700.t2"; gene_id "Ledus.S4G097700"
Ledus.S4	AUGUSTUS	exon	6975784	6976548	.	+	.	transcript_id "Ledus.S4G097700.t2"; gene_id "Ledus.S4G097700"
Ledus.S4	AUGUSTUS	stop_codon	6976549	6976551	.	+	0	transcript_id "Ledus.S4G097700.t2"; gene_id "Ledus.S4G097700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10896.t1 is derived from g4514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	355236	359004	.	-	.	Ledus.S4G005200
Ledus.S4	AUGUSTUS	transcript	355236	359004	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	stop_codon	355233	355235	.	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	355236	355337	1	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	355236	355337	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	355338	355430	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	355431	355488	1	-	1	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	355431	355488	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	355489	355584	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	355585	355721	1	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	355585	355721	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	355722	355811	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	355812	355891	1	-	2	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	355812	355891	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	355892	356014	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	356015	356174	1	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	356015	356174	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	356175	356263	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	356264	356401	1	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	356264	356401	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	356402	356480	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	356481	356561	1	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	356481	356561	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	356562	356658	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	356659	356712	1	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	356659	356712	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	356713	356795	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	356796	356954	1	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	356796	356954	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	356955	357040	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	357041	357146	1	-	1	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	357041	357146	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	357147	357228	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	357229	357296	1	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	357229	357296	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	357297	357396	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	357397	357546	1	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	357397	357546	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	357547	357630	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	357631	357743	1	-	2	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	357631	357743	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	357744	357848	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	357849	358060	0.88	-	1	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	357849	358060	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	358061	358149	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	358150	358237	1	-	2	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	358150	358237	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	358238	358375	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	358376	358490	1	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	358376	358490	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	358491	358582	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	358583	358774	1	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	358583	358774	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	intron	358775	358854	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	CDS	358855	359004	0.54	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	exon	358855	359004	.	-	.	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
Ledus.S4	AUGUSTUS	start_codon	359002	359004	.	-	0	transcript_id "Ledus.S4G005200.t1"; gene_id "Ledus.S4G005200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13038.t1 is derived from g6848.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3776679	3777179	.	-	.	Ledus.S6G010000
Ledus.S6	AUGUSTUS	transcript	3776679	3777179	.	-	.	transcript_id "Ledus.S6G010000.t1"; gene_id "Ledus.S6G010000"
Ledus.S6	AUGUSTUS	stop_codon	3776676	3776678	.	-	0	transcript_id "Ledus.S6G010000.t1"; gene_id "Ledus.S6G010000"
Ledus.S6	AUGUSTUS	CDS	3776679	3777179	0.98	-	0	transcript_id "Ledus.S6G010000.t1"; gene_id "Ledus.S6G010000"
Ledus.S6	AUGUSTUS	exon	3776679	3777179	.	-	.	transcript_id "Ledus.S6G010000.t1"; gene_id "Ledus.S6G010000"
Ledus.S6	AUGUSTUS	start_codon	3777177	3777179	.	-	0	transcript_id "Ledus.S6G010000.t1"; gene_id "Ledus.S6G010000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10424.t1 is derived from g11454.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15067081	15067919	.	-	.	Ledus.S3G190100
Ledus.S3	AUGUSTUS	transcript	15067081	15067919	.	-	.	transcript_id "Ledus.S3G190100.t1"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	stop_codon	15067078	15067080	.	-	0	transcript_id "Ledus.S3G190100.t1"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	CDS	15067081	15067119	0.95	-	0	transcript_id "Ledus.S3G190100.t1"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	exon	15067081	15067119	.	-	.	transcript_id "Ledus.S3G190100.t1"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	intron	15067120	15067212	.	-	.	transcript_id "Ledus.S3G190100.t1"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	CDS	15067213	15067293	0.99	-	0	transcript_id "Ledus.S3G190100.t1"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	exon	15067213	15067293	.	-	.	transcript_id "Ledus.S3G190100.t1"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	intron	15067294	15067634	.	-	.	transcript_id "Ledus.S3G190100.t1"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	CDS	15067635	15067919	0.95	-	0	transcript_id "Ledus.S3G190100.t1"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	exon	15067635	15067919	.	-	.	transcript_id "Ledus.S3G190100.t1"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	start_codon	15067917	15067919	.	-	0	transcript_id "Ledus.S3G190100.t1"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	transcript	15067081	15067919	.	-	.	transcript_id "Ledus.S3G190100.t2"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	stop_codon	15067078	15067080	.	-	0	transcript_id "Ledus.S3G190100.t2"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	CDS	15067081	15067119	0.71	-	0	transcript_id "Ledus.S3G190100.t2"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	exon	15067081	15067119	.	-	.	transcript_id "Ledus.S3G190100.t2"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	intron	15067120	15067212	.	-	.	transcript_id "Ledus.S3G190100.t2"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	CDS	15067213	15067287	0.63	-	0	transcript_id "Ledus.S3G190100.t2"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	exon	15067213	15067287	.	-	.	transcript_id "Ledus.S3G190100.t2"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	intron	15067288	15067634	.	-	.	transcript_id "Ledus.S3G190100.t2"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	CDS	15067635	15067919	0.55	-	0	transcript_id "Ledus.S3G190100.t2"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	exon	15067635	15067919	.	-	.	transcript_id "Ledus.S3G190100.t2"; gene_id "Ledus.S3G190100"
Ledus.S3	AUGUSTUS	start_codon	15067917	15067919	.	-	0	transcript_id "Ledus.S3G190100.t2"; gene_id "Ledus.S3G190100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10899.t1 is derived from g4517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	376255	377546	.	+	.	Ledus.S4G005500
Ledus.S4	AUGUSTUS	transcript	376255	377546	.	+	.	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	start_codon	376255	376257	.	+	0	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	CDS	376255	376347	1	+	0	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	exon	376255	376347	.	+	.	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	intron	376348	376650	.	+	.	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	CDS	376651	376725	1	+	0	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	exon	376651	376725	.	+	.	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	intron	376726	376810	.	+	.	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	CDS	376811	376966	1	+	0	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	exon	376811	376966	.	+	.	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	intron	376967	377104	.	+	.	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	CDS	377105	377203	1	+	0	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	exon	377105	377203	.	+	.	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	intron	377204	377465	.	+	.	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	CDS	377466	377546	1	+	0	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	exon	377466	377546	.	+	.	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
Ledus.S4	AUGUSTUS	stop_codon	377547	377549	.	+	0	transcript_id "Ledus.S4G005500.t1"; gene_id "Ledus.S4G005500"
# This transcript jg5744.t2 is derived from g3183.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5745.t1 is derived from g3184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26439495	26441110	.	+	.	Ledus.S1G316600
Ledus.S1	AUGUSTUS	transcript	26439495	26441110	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	start_codon	26439495	26439497	.	+	0	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	CDS	26439495	26439593	1	+	0	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	exon	26439495	26439593	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	intron	26439594	26439719	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	CDS	26439720	26439776	1	+	0	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	exon	26439720	26439776	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	intron	26439777	26439893	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	CDS	26439894	26439944	1	+	0	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	exon	26439894	26439944	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	intron	26439945	26440072	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	CDS	26440073	26440135	1	+	0	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	exon	26440073	26440135	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	intron	26440136	26440302	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	CDS	26440303	26440353	1	+	0	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	exon	26440303	26440353	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	intron	26440354	26440472	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	CDS	26440473	26440539	1	+	0	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	exon	26440473	26440539	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	intron	26440540	26440652	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	CDS	26440653	26440735	1	+	2	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	exon	26440653	26440735	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	intron	26440736	26440828	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	CDS	26440829	26440921	1	+	0	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	exon	26440829	26440921	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	intron	26440922	26441005	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	CDS	26441006	26441110	0.88	+	0	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	exon	26441006	26441110	.	+	.	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
Ledus.S1	AUGUSTUS	stop_codon	26441111	26441113	.	+	0	transcript_id "Ledus.S1G316600.t1"; gene_id "Ledus.S1G316600"
# This transcript jg10433.t2 is derived from g11463.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10434.t1 is derived from g11464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15094458	15095002	.	-	.	Ledus.S3G191100
Ledus.S3	AUGUSTUS	transcript	15094458	15095002	.	-	.	transcript_id "Ledus.S3G191100.t1"; gene_id "Ledus.S3G191100"
Ledus.S3	AUGUSTUS	stop_codon	15094455	15094457	.	-	0	transcript_id "Ledus.S3G191100.t1"; gene_id "Ledus.S3G191100"
Ledus.S3	AUGUSTUS	CDS	15094458	15094570	0.92	-	2	transcript_id "Ledus.S3G191100.t1"; gene_id "Ledus.S3G191100"
Ledus.S3	AUGUSTUS	exon	15094458	15094570	.	-	.	transcript_id "Ledus.S3G191100.t1"; gene_id "Ledus.S3G191100"
Ledus.S3	AUGUSTUS	intron	15094571	15094699	.	-	.	transcript_id "Ledus.S3G191100.t1"; gene_id "Ledus.S3G191100"
Ledus.S3	AUGUSTUS	CDS	15094700	15094749	1	-	1	transcript_id "Ledus.S3G191100.t1"; gene_id "Ledus.S3G191100"
Ledus.S3	AUGUSTUS	exon	15094700	15094749	.	-	.	transcript_id "Ledus.S3G191100.t1"; gene_id "Ledus.S3G191100"
Ledus.S3	AUGUSTUS	intron	15094750	15094817	.	-	.	transcript_id "Ledus.S3G191100.t1"; gene_id "Ledus.S3G191100"
Ledus.S3	AUGUSTUS	CDS	15094818	15095002	0.72	-	0	transcript_id "Ledus.S3G191100.t1"; gene_id "Ledus.S3G191100"
Ledus.S3	AUGUSTUS	exon	15094818	15095002	.	-	.	transcript_id "Ledus.S3G191100.t1"; gene_id "Ledus.S3G191100"
Ledus.S3	AUGUSTUS	start_codon	15095000	15095002	.	-	0	transcript_id "Ledus.S3G191100.t1"; gene_id "Ledus.S3G191100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10277.t1 is derived from g11307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13975116	13978160	.	-	.	Ledus.S3G175400
Ledus.S3	AUGUSTUS	transcript	13975116	13978160	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	stop_codon	13975113	13975115	.	-	0	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13975116	13975211	0.99	-	0	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13975116	13975211	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13975212	13975303	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13975304	13975377	1	-	2	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13975304	13975377	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13975378	13975447	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13975448	13975508	1	-	0	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13975448	13975508	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13975509	13975612	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13975613	13975700	0.99	-	1	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13975613	13975700	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13975701	13975819	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13975820	13975914	0.99	-	0	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13975820	13975914	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13975915	13976077	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13976078	13976182	1	-	0	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13976078	13976182	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13976183	13976284	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13976285	13976394	1	-	2	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13976285	13976394	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13976395	13976581	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13976582	13976708	1	-	0	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13976582	13976708	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13976709	13976796	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13976797	13976925	1	-	0	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13976797	13976925	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13976926	13977114	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13977115	13977231	0.85	-	0	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13977115	13977231	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13977232	13977337	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13977338	13977541	1	-	0	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13977338	13977541	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13977542	13977697	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13977698	13977792	1	-	2	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13977698	13977792	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13977793	13977906	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13977907	13978001	0.51	-	1	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13977907	13978001	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	intron	13978002	13978104	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	CDS	13978105	13978160	0.33	-	0	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	exon	13978105	13978160	.	-	.	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
Ledus.S3	AUGUSTUS	start_codon	13978158	13978160	.	-	0	transcript_id "Ledus.S3G175400.t1"; gene_id "Ledus.S3G175400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7800.t1 is derived from g12471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6855710	6856714	.	-	.	Ledus.S5G057800
Ledus.S5	AUGUSTUS	transcript	6856281	6856714	.	-	.	transcript_id "Ledus.S5G057800.t1"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	stop_codon	6856278	6856280	.	-	0	transcript_id "Ledus.S5G057800.t1"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	CDS	6856281	6856286	1	-	0	transcript_id "Ledus.S5G057800.t1"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	exon	6856281	6856286	.	-	.	transcript_id "Ledus.S5G057800.t1"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	intron	6856287	6856372	.	-	.	transcript_id "Ledus.S5G057800.t1"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	CDS	6856373	6856714	1	-	0	transcript_id "Ledus.S5G057800.t1"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	exon	6856373	6856714	.	-	.	transcript_id "Ledus.S5G057800.t1"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	start_codon	6856712	6856714	.	-	0	transcript_id "Ledus.S5G057800.t1"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	transcript	6856143	6856714	.	-	.	transcript_id "Ledus.S5G057800.t2"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	stop_codon	6856140	6856142	.	-	0	transcript_id "Ledus.S5G057800.t2"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	CDS	6856143	6856214	0.96	-	0	transcript_id "Ledus.S5G057800.t2"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	exon	6856143	6856214	.	-	.	transcript_id "Ledus.S5G057800.t2"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	intron	6856215	6856294	.	-	.	transcript_id "Ledus.S5G057800.t2"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	CDS	6856295	6856714	1	-	0	transcript_id "Ledus.S5G057800.t2"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	exon	6856295	6856714	.	-	.	transcript_id "Ledus.S5G057800.t2"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	start_codon	6856712	6856714	.	-	0	transcript_id "Ledus.S5G057800.t2"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	transcript	6855710	6856714	.	-	.	transcript_id "Ledus.S5G057800.t3"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	stop_codon	6855707	6855709	.	-	0	transcript_id "Ledus.S5G057800.t3"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	CDS	6855710	6856714	1	-	0	transcript_id "Ledus.S5G057800.t3"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	exon	6855710	6856714	.	-	.	transcript_id "Ledus.S5G057800.t3"; gene_id "Ledus.S5G057800"
Ledus.S5	AUGUSTUS	start_codon	6856712	6856714	.	-	0	transcript_id "Ledus.S5G057800.t3"; gene_id "Ledus.S5G057800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1356.t1 is derived from g8217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9434922	9439095	.	-	.	Ledus.S2G123800
Ledus.S2	AUGUSTUS	transcript	9434922	9439095	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	stop_codon	9434919	9434921	.	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9434922	9434985	0.92	-	1	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9434922	9434985	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9434986	9435076	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9435077	9435091	0.97	-	1	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9435077	9435091	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9435092	9435169	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9435170	9435235	0.99	-	1	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9435170	9435235	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9435236	9435459	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9435460	9435533	1	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9435460	9435533	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9435534	9435658	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9435659	9435739	1	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9435659	9435739	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9435740	9435900	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9435901	9436035	1	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9435901	9436035	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9436036	9436119	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9436120	9436284	1	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9436120	9436284	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9436285	9436436	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9436437	9436499	1	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9436437	9436499	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9436500	9436631	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9436632	9436694	1	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9436632	9436694	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9436695	9436841	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9436842	9436895	1	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9436842	9436895	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9436896	9437159	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9437160	9437216	1	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9437160	9437216	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9437217	9437379	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9437380	9437448	1	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9437380	9437448	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9437449	9437566	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9437567	9437680	1	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9437567	9437680	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9437681	9437760	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9437761	9437832	1	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9437761	9437832	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9437833	9437986	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9437987	9438066	1	-	2	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9437987	9438066	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	intron	9438067	9438857	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	CDS	9438858	9439095	0.95	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	exon	9438858	9439095	.	-	.	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
Ledus.S2	AUGUSTUS	start_codon	9439093	9439095	.	-	0	transcript_id "Ledus.S2G123800.t1"; gene_id "Ledus.S2G123800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5794.t1 is derived from g3236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26903562	26905760	.	+	.	Ledus.S1G321500
Ledus.S1	AUGUSTUS	transcript	26903562	26905760	.	+	.	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	start_codon	26903562	26903564	.	+	0	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	CDS	26903562	26903627	0.41	+	0	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	exon	26903562	26903627	.	+	.	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	intron	26903628	26904072	.	+	.	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	CDS	26904073	26904234	0.99	+	0	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	exon	26904073	26904234	.	+	.	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	intron	26904235	26904330	.	+	.	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	CDS	26904331	26904565	1	+	0	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	exon	26904331	26904565	.	+	.	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	intron	26904566	26904635	.	+	.	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	CDS	26904636	26905006	0.99	+	2	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	exon	26904636	26905006	.	+	.	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	intron	26905007	26905112	.	+	.	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	CDS	26905113	26905760	1	+	0	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	exon	26905113	26905760	.	+	.	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
Ledus.S1	AUGUSTUS	stop_codon	26905761	26905763	.	+	0	transcript_id "Ledus.S1G321500.t1"; gene_id "Ledus.S1G321500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11955.t1 is derived from g5574.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8005520	8007203	.	-	.	Ledus.S4G111100
Ledus.S4	AUGUSTUS	transcript	8005520	8007203	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	stop_codon	8005517	8005519	.	-	0	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	CDS	8005520	8005772	0.99	-	1	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	exon	8005520	8005772	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	intron	8005773	8005878	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	CDS	8005879	8005935	1	-	1	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	exon	8005879	8005935	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	intron	8005936	8006024	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	CDS	8006025	8006097	1	-	2	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	exon	8006025	8006097	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	intron	8006098	8006183	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	CDS	8006184	8006358	1	-	0	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	exon	8006184	8006358	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	intron	8006359	8006434	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	CDS	8006435	8006473	1	-	0	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	exon	8006435	8006473	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	intron	8006474	8006569	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	CDS	8006570	8006624	1	-	1	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	exon	8006570	8006624	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	intron	8006625	8006781	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	CDS	8006782	8006828	1	-	0	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	exon	8006782	8006828	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	intron	8006829	8006907	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	CDS	8006908	8006971	1	-	1	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	exon	8006908	8006971	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	intron	8006972	8007045	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	CDS	8007046	8007203	0.93	-	0	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	exon	8007046	8007203	.	-	.	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
Ledus.S4	AUGUSTUS	start_codon	8007201	8007203	.	-	0	transcript_id "Ledus.S4G111100.t1"; gene_id "Ledus.S4G111100"
# This transcript jg10821.t2 is derived from g11853.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10822.t1 is derived from g11854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18046483	18046968	.	+	.	Ledus.S3G229900
Ledus.S3	AUGUSTUS	transcript	18046483	18046968	.	+	.	transcript_id "Ledus.S3G229900.t1"; gene_id "Ledus.S3G229900"
Ledus.S3	AUGUSTUS	start_codon	18046483	18046485	.	+	0	transcript_id "Ledus.S3G229900.t1"; gene_id "Ledus.S3G229900"
Ledus.S3	AUGUSTUS	CDS	18046483	18046675	1	+	0	transcript_id "Ledus.S3G229900.t1"; gene_id "Ledus.S3G229900"
Ledus.S3	AUGUSTUS	exon	18046483	18046675	.	+	.	transcript_id "Ledus.S3G229900.t1"; gene_id "Ledus.S3G229900"
Ledus.S3	AUGUSTUS	intron	18046676	18046774	.	+	.	transcript_id "Ledus.S3G229900.t1"; gene_id "Ledus.S3G229900"
Ledus.S3	AUGUSTUS	CDS	18046775	18046968	1	+	2	transcript_id "Ledus.S3G229900.t1"; gene_id "Ledus.S3G229900"
Ledus.S3	AUGUSTUS	exon	18046775	18046968	.	+	.	transcript_id "Ledus.S3G229900.t1"; gene_id "Ledus.S3G229900"
Ledus.S3	AUGUSTUS	stop_codon	18046969	18046971	.	+	0	transcript_id "Ledus.S3G229900.t1"; gene_id "Ledus.S3G229900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2739.t1 is derived from g173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2757430	2757666	.	-	.	Ledus.S1G016000
Ledus.S1	AUGUSTUS	transcript	2757430	2757666	.	-	.	transcript_id "Ledus.S1G016000.t1"; gene_id "Ledus.S1G016000"
Ledus.S1	AUGUSTUS	stop_codon	2757427	2757429	.	-	0	transcript_id "Ledus.S1G016000.t1"; gene_id "Ledus.S1G016000"
Ledus.S1	AUGUSTUS	CDS	2757430	2757666	0.71	-	0	transcript_id "Ledus.S1G016000.t1"; gene_id "Ledus.S1G016000"
Ledus.S1	AUGUSTUS	exon	2757430	2757666	.	-	.	transcript_id "Ledus.S1G016000.t1"; gene_id "Ledus.S1G016000"
Ledus.S1	AUGUSTUS	start_codon	2757664	2757666	.	-	0	transcript_id "Ledus.S1G016000.t1"; gene_id "Ledus.S1G016000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10921.t1 is derived from g4539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	590760	593270	.	-	.	Ledus.S4G007700
Ledus.S4	AUGUSTUS	transcript	590760	593270	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	stop_codon	590757	590759	.	-	0	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	CDS	590760	591023	1	-	0	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	exon	590760	591023	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	intron	591024	591126	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	CDS	591127	591421	1	-	1	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	exon	591127	591421	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	intron	591422	591515	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	CDS	591516	591645	1	-	2	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	exon	591516	591645	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	intron	591646	591753	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	CDS	591754	592147	0.97	-	0	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	exon	591754	592147	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	intron	592148	592233	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	CDS	592234	592338	1	-	0	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	exon	592234	592338	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	intron	592339	592413	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	CDS	592414	592539	1	-	0	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	exon	592414	592539	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	intron	592540	592625	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	CDS	592626	593270	0.99	-	0	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	exon	592626	593270	.	-	.	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
Ledus.S4	AUGUSTUS	start_codon	593268	593270	.	-	0	transcript_id "Ledus.S4G007700.t1"; gene_id "Ledus.S4G007700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1510.t1 is derived from g8371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10635009	10638039	.	-	.	Ledus.S2G139200
Ledus.S2	AUGUSTUS	transcript	10635009	10638039	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	stop_codon	10635006	10635008	.	-	0	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	CDS	10635009	10635042	1	-	1	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	exon	10635009	10635042	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	intron	10635043	10635432	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	CDS	10635433	10635528	1	-	1	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	exon	10635433	10635528	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	intron	10635529	10635710	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	CDS	10635711	10635772	1	-	0	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	exon	10635711	10635772	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	intron	10635773	10635947	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	CDS	10635948	10636109	1	-	0	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	exon	10635948	10636109	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	intron	10636110	10636276	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	CDS	10636277	10636449	0.93	-	2	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	exon	10636277	10636449	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	intron	10636450	10636523	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	CDS	10636524	10636717	1	-	1	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	exon	10636524	10636717	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	intron	10636718	10636839	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	CDS	10636840	10636943	1	-	0	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	exon	10636840	10636943	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	intron	10636944	10637075	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	CDS	10637076	10637317	1	-	2	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	exon	10637076	10637317	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	intron	10637318	10637972	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	CDS	10637973	10638039	0.97	-	0	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	exon	10637973	10638039	.	-	.	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
Ledus.S2	AUGUSTUS	start_codon	10638037	10638039	.	-	0	transcript_id "Ledus.S2G139200.t1"; gene_id "Ledus.S2G139200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11937.t1 is derived from g5556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7884276	7886420	.	-	.	Ledus.S4G109300
Ledus.S4	AUGUSTUS	transcript	7884276	7886420	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	stop_codon	7884273	7884275	.	-	0	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	CDS	7884276	7884301	0.72	-	2	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	exon	7884276	7884301	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	intron	7884302	7884401	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	CDS	7884402	7884549	0.69	-	0	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	exon	7884402	7884549	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	intron	7884550	7884689	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	CDS	7884690	7884890	0.99	-	0	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	exon	7884690	7884890	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	intron	7884891	7884973	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	CDS	7884974	7885360	0.98	-	0	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	exon	7884974	7885360	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	intron	7885361	7885443	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	CDS	7885444	7885743	0.78	-	0	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	exon	7885444	7885743	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	intron	7885744	7885827	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	CDS	7885828	7886043	0.79	-	0	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	exon	7885828	7886043	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	intron	7886044	7886117	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	CDS	7886118	7886420	0.48	-	0	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	exon	7886118	7886420	.	-	.	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
Ledus.S4	AUGUSTUS	start_codon	7886418	7886420	.	-	0	transcript_id "Ledus.S4G109300.t1"; gene_id "Ledus.S4G109300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7418.t1 is derived from g12089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2159423	2162524	.	-	.	Ledus.S5G019600
Ledus.S5	AUGUSTUS	transcript	2159423	2162524	.	-	.	transcript_id "Ledus.S5G019600.t1"; gene_id "Ledus.S5G019600"
Ledus.S5	AUGUSTUS	stop_codon	2159420	2159422	.	-	0	transcript_id "Ledus.S5G019600.t1"; gene_id "Ledus.S5G019600"
Ledus.S5	AUGUSTUS	CDS	2159423	2162524	0.61	-	0	transcript_id "Ledus.S5G019600.t1"; gene_id "Ledus.S5G019600"
Ledus.S5	AUGUSTUS	exon	2159423	2162524	.	-	.	transcript_id "Ledus.S5G019600.t1"; gene_id "Ledus.S5G019600"
Ledus.S5	AUGUSTUS	start_codon	2162522	2162524	.	-	0	transcript_id "Ledus.S5G019600.t1"; gene_id "Ledus.S5G019600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg78.t1 is derived from g9491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	266993	267334	.	+	.	Ledus.C8G003800
Ledus.C8	AUGUSTUS	transcript	266993	267334	.	+	.	transcript_id "Ledus.C8G003800.t1"; gene_id "Ledus.C8G003800"
Ledus.C8	AUGUSTUS	start_codon	266993	266995	.	+	0	transcript_id "Ledus.C8G003800.t1"; gene_id "Ledus.C8G003800"
Ledus.C8	AUGUSTUS	CDS	266993	267334	0.86	+	0	transcript_id "Ledus.C8G003800.t1"; gene_id "Ledus.C8G003800"
Ledus.C8	AUGUSTUS	exon	266993	267334	.	+	.	transcript_id "Ledus.C8G003800.t1"; gene_id "Ledus.C8G003800"
Ledus.C8	AUGUSTUS	stop_codon	267335	267337	.	+	0	transcript_id "Ledus.C8G003800.t1"; gene_id "Ledus.C8G003800"
# This transcript jg8598.t2 is derived from g9628.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8599.t1 is derived from g9629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	505290	507589	.	+	.	Ledus.S3G007600
Ledus.S3	AUGUSTUS	transcript	505290	507589	.	+	.	transcript_id "Ledus.S3G007600.t1"; gene_id "Ledus.S3G007600"
Ledus.S3	AUGUSTUS	start_codon	505290	505292	.	+	0	transcript_id "Ledus.S3G007600.t1"; gene_id "Ledus.S3G007600"
Ledus.S3	AUGUSTUS	CDS	505290	506042	0.69	+	0	transcript_id "Ledus.S3G007600.t1"; gene_id "Ledus.S3G007600"
Ledus.S3	AUGUSTUS	exon	505290	506042	.	+	.	transcript_id "Ledus.S3G007600.t1"; gene_id "Ledus.S3G007600"
Ledus.S3	AUGUSTUS	intron	506043	506341	.	+	.	transcript_id "Ledus.S3G007600.t1"; gene_id "Ledus.S3G007600"
Ledus.S3	AUGUSTUS	CDS	506342	507589	0.88	+	0	transcript_id "Ledus.S3G007600.t1"; gene_id "Ledus.S3G007600"
Ledus.S3	AUGUSTUS	exon	506342	507589	.	+	.	transcript_id "Ledus.S3G007600.t1"; gene_id "Ledus.S3G007600"
Ledus.S3	AUGUSTUS	stop_codon	507590	507592	.	+	0	transcript_id "Ledus.S3G007600.t1"; gene_id "Ledus.S3G007600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7968.t1 is derived from g12639.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8281273	8281965	.	+	.	Ledus.S5G074600
Ledus.S5	AUGUSTUS	transcript	8281273	8281965	.	+	.	transcript_id "Ledus.S5G074600.t1"; gene_id "Ledus.S5G074600"
Ledus.S5	AUGUSTUS	start_codon	8281273	8281275	.	+	0	transcript_id "Ledus.S5G074600.t1"; gene_id "Ledus.S5G074600"
Ledus.S5	AUGUSTUS	CDS	8281273	8281965	1	+	0	transcript_id "Ledus.S5G074600.t1"; gene_id "Ledus.S5G074600"
Ledus.S5	AUGUSTUS	exon	8281273	8281965	.	+	.	transcript_id "Ledus.S5G074600.t1"; gene_id "Ledus.S5G074600"
Ledus.S5	AUGUSTUS	stop_codon	8281966	8281968	.	+	0	transcript_id "Ledus.S5G074600.t1"; gene_id "Ledus.S5G074600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7612.t1 is derived from g12283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4358561	4358767	.	+	.	Ledus.S5G039000
Ledus.S5	AUGUSTUS	transcript	4358561	4358767	.	+	.	transcript_id "Ledus.S5G039000.t1"; gene_id "Ledus.S5G039000"
Ledus.S5	AUGUSTUS	start_codon	4358561	4358563	.	+	0	transcript_id "Ledus.S5G039000.t1"; gene_id "Ledus.S5G039000"
Ledus.S5	AUGUSTUS	CDS	4358561	4358767	0.71	+	0	transcript_id "Ledus.S5G039000.t1"; gene_id "Ledus.S5G039000"
Ledus.S5	AUGUSTUS	exon	4358561	4358767	.	+	.	transcript_id "Ledus.S5G039000.t1"; gene_id "Ledus.S5G039000"
Ledus.S5	AUGUSTUS	stop_codon	4358768	4358770	.	+	0	transcript_id "Ledus.S5G039000.t1"; gene_id "Ledus.S5G039000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12671.t1 is derived from g6293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13809492	13811003	.	-	.	Ledus.S4G182700
Ledus.S4	AUGUSTUS	transcript	13809492	13811003	.	-	.	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	stop_codon	13809489	13809491	.	-	0	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	CDS	13809492	13809648	1	-	1	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	exon	13809492	13809648	.	-	.	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	intron	13809649	13809729	.	-	.	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	CDS	13809730	13809950	1	-	0	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	exon	13809730	13809950	.	-	.	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	intron	13809951	13810074	.	-	.	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	CDS	13810075	13810425	0.99	-	0	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	exon	13810075	13810425	.	-	.	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	intron	13810426	13810526	.	-	.	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	CDS	13810527	13810711	1	-	2	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	exon	13810527	13810711	.	-	.	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	intron	13810712	13810795	.	-	.	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	CDS	13810796	13811003	1	-	0	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	exon	13810796	13811003	.	-	.	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
Ledus.S4	AUGUSTUS	start_codon	13811001	13811003	.	-	0	transcript_id "Ledus.S4G182700.t1"; gene_id "Ledus.S4G182700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8888.t1 is derived from g9918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2840963	2842459	.	-	.	Ledus.S3G036500
Ledus.S3	AUGUSTUS	transcript	2840963	2842459	.	-	.	transcript_id "Ledus.S3G036500.t1"; gene_id "Ledus.S3G036500"
Ledus.S3	AUGUSTUS	stop_codon	2840960	2840962	.	-	0	transcript_id "Ledus.S3G036500.t1"; gene_id "Ledus.S3G036500"
Ledus.S3	AUGUSTUS	CDS	2840963	2842459	0.25	-	0	transcript_id "Ledus.S3G036500.t1"; gene_id "Ledus.S3G036500"
Ledus.S3	AUGUSTUS	exon	2840963	2842459	.	-	.	transcript_id "Ledus.S3G036500.t1"; gene_id "Ledus.S3G036500"
Ledus.S3	AUGUSTUS	start_codon	2842457	2842459	.	-	0	transcript_id "Ledus.S3G036500.t1"; gene_id "Ledus.S3G036500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5074.t1 is derived from g2513.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21466150	21469052	.	+	.	Ledus.S1G249500
Ledus.S1	AUGUSTUS	transcript	21466150	21469052	.	+	.	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	start_codon	21466150	21466152	.	+	0	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	CDS	21466150	21466163	0.71	+	0	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	exon	21466150	21466163	.	+	.	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	intron	21466164	21466348	.	+	.	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	CDS	21466349	21466432	0.94	+	1	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	exon	21466349	21466432	.	+	.	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	intron	21466433	21466490	.	+	.	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	CDS	21466491	21466791	0.99	+	1	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	exon	21466491	21466791	.	+	.	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	intron	21466792	21466889	.	+	.	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	CDS	21466890	21467165	1	+	0	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	exon	21466890	21467165	.	+	.	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	intron	21467166	21467255	.	+	.	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	CDS	21467256	21467393	1	+	0	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	exon	21467256	21467393	.	+	.	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	intron	21467394	21467468	.	+	.	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	CDS	21467469	21469052	1	+	0	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	exon	21467469	21469052	.	+	.	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	stop_codon	21469053	21469055	.	+	0	transcript_id "Ledus.S1G249500.t1"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	transcript	21466150	21469052	.	+	.	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	start_codon	21466150	21466152	.	+	0	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	CDS	21466150	21466163	0.74	+	0	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	exon	21466150	21466163	.	+	.	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	intron	21466164	21466368	.	+	.	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	CDS	21466369	21466389	0.39	+	1	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	exon	21466369	21466389	.	+	.	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	intron	21466390	21466490	.	+	.	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	CDS	21466491	21466791	0.63	+	1	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	exon	21466491	21466791	.	+	.	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	intron	21466792	21466889	.	+	.	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	CDS	21466890	21467165	1	+	0	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	exon	21466890	21467165	.	+	.	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	intron	21467166	21467255	.	+	.	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	CDS	21467256	21467393	1	+	0	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	exon	21467256	21467393	.	+	.	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	intron	21467394	21467468	.	+	.	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	CDS	21467469	21469052	1	+	0	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	exon	21467469	21469052	.	+	.	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
Ledus.S1	AUGUSTUS	stop_codon	21469053	21469055	.	+	0	transcript_id "Ledus.S1G249500.t2"; gene_id "Ledus.S1G249500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8478.t1 is derived from g13150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12121106	12121799	.	+	.	Ledus.S5G125600
Ledus.S5	AUGUSTUS	transcript	12121106	12121799	.	+	.	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	start_codon	12121106	12121108	.	+	0	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	CDS	12121106	12121168	0.97	+	0	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	exon	12121106	12121168	.	+	.	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	intron	12121169	12121266	.	+	.	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	CDS	12121267	12121291	0.99	+	0	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	exon	12121267	12121291	.	+	.	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	intron	12121292	12121421	.	+	.	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	CDS	12121422	12121498	0.99	+	2	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	exon	12121422	12121498	.	+	.	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	intron	12121499	12121712	.	+	.	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	CDS	12121713	12121799	0.99	+	0	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	exon	12121713	12121799	.	+	.	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
Ledus.S5	AUGUSTUS	stop_codon	12121800	12121802	.	+	0	transcript_id "Ledus.S5G125600.t1"; gene_id "Ledus.S5G125600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8851.t1 is derived from g9881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2304645	2309136	.	+	.	Ledus.S3G032800
Ledus.S3	AUGUSTUS	transcript	2304645	2309136	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	start_codon	2304645	2304647	.	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2304645	2304753	0.89	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2304645	2304753	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2304754	2304830	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2304831	2305108	1	+	2	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2304831	2305108	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2305109	2305243	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2305244	2305499	1	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2305244	2305499	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2305500	2305573	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2305574	2305964	1	+	2	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2305574	2305964	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2305965	2306084	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2306085	2306343	1	+	1	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2306085	2306343	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2306344	2306455	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2306456	2306587	1	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2306456	2306587	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2306588	2306710	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2306711	2306785	1	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2306711	2306785	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2306786	2306907	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2306908	2307033	1	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2306908	2307033	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2307034	2307123	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2307124	2307233	1	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2307124	2307233	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2307234	2307321	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2307322	2307400	1	+	1	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2307322	2307400	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2307401	2307603	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2307604	2307741	1	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2307604	2307741	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2307742	2307836	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2307837	2307948	1	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2307837	2307948	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2307949	2308031	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2308032	2308195	1	+	2	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2308032	2308195	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2308196	2308293	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2308294	2308399	1	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2308294	2308399	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2308400	2308517	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2308518	2308594	0.99	+	2	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2308518	2308594	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2308595	2308703	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2308704	2308847	0.99	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2308704	2308847	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	intron	2308848	2309010	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	CDS	2309011	2309136	1	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	exon	2309011	2309136	.	+	.	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
Ledus.S3	AUGUSTUS	stop_codon	2309137	2309139	.	+	0	transcript_id "Ledus.S3G032800.t1"; gene_id "Ledus.S3G032800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7261.t1 is derived from g11932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	523527	528554	.	+	.	Ledus.S5G003900
Ledus.S5	AUGUSTUS	transcript	523527	528554	.	+	.	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	start_codon	523527	523529	.	+	0	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	CDS	523527	525726	0.9	+	0	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	exon	523527	525726	.	+	.	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	intron	525727	526088	.	+	.	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	CDS	526089	526570	1	+	2	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	exon	526089	526570	.	+	.	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	intron	526571	526743	.	+	.	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	CDS	526744	527062	1	+	0	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	exon	526744	527062	.	+	.	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	intron	527063	527212	.	+	.	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	CDS	527213	527311	1	+	2	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	exon	527213	527311	.	+	.	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	intron	527312	527403	.	+	.	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	CDS	527404	528554	0.78	+	2	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	exon	527404	528554	.	+	.	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
Ledus.S5	AUGUSTUS	stop_codon	528555	528557	.	+	0	transcript_id "Ledus.S5G003900.t1"; gene_id "Ledus.S5G003900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7565.t1 is derived from g12236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4074521	4076856	.	+	.	Ledus.S5G034300
Ledus.S5	AUGUSTUS	transcript	4074521	4076856	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	start_codon	4074521	4074523	.	+	0	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	CDS	4074521	4074686	1	+	0	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	exon	4074521	4074686	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	intron	4074687	4074773	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	CDS	4074774	4075030	1	+	2	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	exon	4074774	4075030	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	intron	4075031	4075117	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	CDS	4075118	4075179	1	+	0	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	exon	4075118	4075179	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	intron	4075180	4075389	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	CDS	4075390	4075608	1	+	1	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	exon	4075390	4075608	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	intron	4075609	4075705	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	CDS	4075706	4075832	1	+	1	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	exon	4075706	4075832	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	intron	4075833	4075915	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	CDS	4075916	4076295	1	+	0	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	exon	4075916	4076295	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	intron	4076296	4076378	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	CDS	4076379	4076523	1	+	1	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	exon	4076379	4076523	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	intron	4076524	4076610	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	CDS	4076611	4076856	1	+	0	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	exon	4076611	4076856	.	+	.	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
Ledus.S5	AUGUSTUS	stop_codon	4076857	4076859	.	+	0	transcript_id "Ledus.S5G034300.t1"; gene_id "Ledus.S5G034300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2583.t1 is derived from g16.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	108385	110967	.	-	.	Ledus.S1G000400
Ledus.S1	AUGUSTUS	transcript	108385	110967	.	-	.	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	stop_codon	108382	108384	.	-	0	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	CDS	108385	110200	0.97	-	1	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	exon	108385	110200	.	-	.	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	intron	110201	110311	.	-	.	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	CDS	110312	110503	0.57	-	1	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	exon	110312	110503	.	-	.	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	intron	110504	110688	.	-	.	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	CDS	110689	110770	0.35	-	2	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	exon	110689	110770	.	-	.	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	intron	110771	110879	.	-	.	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	CDS	110880	110967	0.31	-	0	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	exon	110880	110967	.	-	.	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	start_codon	110965	110967	.	-	0	transcript_id "Ledus.S1G000400.t1"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	transcript	108385	110115	.	-	.	transcript_id "Ledus.S1G000400.t2"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	stop_codon	108382	108384	.	-	0	transcript_id "Ledus.S1G000400.t2"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	CDS	108385	110115	0.66	-	0	transcript_id "Ledus.S1G000400.t2"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	exon	108385	110115	.	-	.	transcript_id "Ledus.S1G000400.t2"; gene_id "Ledus.S1G000400"
Ledus.S1	AUGUSTUS	start_codon	110113	110115	.	-	0	transcript_id "Ledus.S1G000400.t2"; gene_id "Ledus.S1G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6813.t1 is derived from g4257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34413046	34419309	.	-	.	Ledus.S1G423400
Ledus.S1	AUGUSTUS	transcript	34413046	34419309	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	stop_codon	34413043	34413045	.	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34413046	34413688	1	-	1	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34413046	34413688	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34413689	34413902	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34413903	34414031	1	-	1	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34413903	34414031	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34414032	34414251	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34414252	34414349	1	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34414252	34414349	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34414350	34414484	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34414485	34414586	1	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34414485	34414586	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34414587	34414685	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34414686	34414814	1	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34414686	34414814	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34414815	34414913	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34414914	34415078	0.99	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34414914	34415078	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34415079	34415188	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34415189	34415302	0.94	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34415189	34415302	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34415303	34415388	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34415389	34415457	1	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34415389	34415457	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34415458	34415539	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34415540	34415674	1	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34415540	34415674	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34415675	34415898	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34415899	34415955	0.83	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34415899	34415955	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34415956	34416061	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34416062	34416310	0.7	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34416062	34416310	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34416311	34416419	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34416420	34416656	0.86	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34416420	34416656	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34416657	34416778	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34416779	34416970	1	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34416779	34416970	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34416971	34417060	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34417061	34417270	1	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34417061	34417270	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34417271	34417426	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34417427	34417518	1	-	2	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34417427	34417518	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34417519	34417674	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34417675	34417923	1	-	2	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34417675	34417923	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34417924	34418170	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34418171	34418705	1	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34418171	34418705	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	intron	34418706	34418790	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	CDS	34418791	34419309	1	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	exon	34418791	34419309	.	-	.	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
Ledus.S1	AUGUSTUS	start_codon	34419307	34419309	.	-	0	transcript_id "Ledus.S1G423400.t1"; gene_id "Ledus.S1G423400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3607.t1 is derived from g1043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10184360	10185689	.	+	.	Ledus.S1G102800
Ledus.S1	AUGUSTUS	transcript	10184360	10185689	.	+	.	transcript_id "Ledus.S1G102800.t1"; gene_id "Ledus.S1G102800"
Ledus.S1	AUGUSTUS	start_codon	10184360	10184362	.	+	0	transcript_id "Ledus.S1G102800.t1"; gene_id "Ledus.S1G102800"
Ledus.S1	AUGUSTUS	CDS	10184360	10184854	0.43	+	0	transcript_id "Ledus.S1G102800.t1"; gene_id "Ledus.S1G102800"
Ledus.S1	AUGUSTUS	exon	10184360	10184854	.	+	.	transcript_id "Ledus.S1G102800.t1"; gene_id "Ledus.S1G102800"
Ledus.S1	AUGUSTUS	intron	10184855	10184936	.	+	.	transcript_id "Ledus.S1G102800.t1"; gene_id "Ledus.S1G102800"
Ledus.S1	AUGUSTUS	CDS	10184937	10185200	1	+	0	transcript_id "Ledus.S1G102800.t1"; gene_id "Ledus.S1G102800"
Ledus.S1	AUGUSTUS	exon	10184937	10185200	.	+	.	transcript_id "Ledus.S1G102800.t1"; gene_id "Ledus.S1G102800"
Ledus.S1	AUGUSTUS	intron	10185201	10185287	.	+	.	transcript_id "Ledus.S1G102800.t1"; gene_id "Ledus.S1G102800"
Ledus.S1	AUGUSTUS	CDS	10185288	10185689	0.54	+	0	transcript_id "Ledus.S1G102800.t1"; gene_id "Ledus.S1G102800"
Ledus.S1	AUGUSTUS	exon	10185288	10185689	.	+	.	transcript_id "Ledus.S1G102800.t1"; gene_id "Ledus.S1G102800"
Ledus.S1	AUGUSTUS	stop_codon	10185690	10185692	.	+	0	transcript_id "Ledus.S1G102800.t1"; gene_id "Ledus.S1G102800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg16.t1 is derived from g9539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C20	AUGUSTUS	gene	18076	20763	.	-	.	Ledus.C20G000200
Ledus.C20	AUGUSTUS	transcript	18076	20763	.	-	.	transcript_id "Ledus.C20G000200.t1"; gene_id "Ledus.C20G000200"
Ledus.C20	AUGUSTUS	stop_codon	18073	18075	.	-	0	transcript_id "Ledus.C20G000200.t1"; gene_id "Ledus.C20G000200"
Ledus.C20	AUGUSTUS	CDS	18076	20282	0.89	-	2	transcript_id "Ledus.C20G000200.t1"; gene_id "Ledus.C20G000200"
Ledus.C20	AUGUSTUS	exon	18076	20282	.	-	.	transcript_id "Ledus.C20G000200.t1"; gene_id "Ledus.C20G000200"
Ledus.C20	AUGUSTUS	intron	20283	20403	.	-	.	transcript_id "Ledus.C20G000200.t1"; gene_id "Ledus.C20G000200"
Ledus.C20	AUGUSTUS	CDS	20404	20409	0.9	-	2	transcript_id "Ledus.C20G000200.t1"; gene_id "Ledus.C20G000200"
Ledus.C20	AUGUSTUS	exon	20404	20409	.	-	.	transcript_id "Ledus.C20G000200.t1"; gene_id "Ledus.C20G000200"
Ledus.C20	AUGUSTUS	intron	20410	20615	.	-	.	transcript_id "Ledus.C20G000200.t1"; gene_id "Ledus.C20G000200"
Ledus.C20	AUGUSTUS	CDS	20616	20763	1	-	0	transcript_id "Ledus.C20G000200.t1"; gene_id "Ledus.C20G000200"
Ledus.C20	AUGUSTUS	exon	20616	20763	.	-	.	transcript_id "Ledus.C20G000200.t1"; gene_id "Ledus.C20G000200"
Ledus.C20	AUGUSTUS	start_codon	20761	20763	.	-	0	transcript_id "Ledus.C20G000200.t1"; gene_id "Ledus.C20G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7237.t1 is derived from g11908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	190761	192403	.	+	.	Ledus.S5G001500
Ledus.S5	AUGUSTUS	transcript	190761	192403	.	+	.	transcript_id "Ledus.S5G001500.t1"; gene_id "Ledus.S5G001500"
Ledus.S5	AUGUSTUS	start_codon	190761	190763	.	+	0	transcript_id "Ledus.S5G001500.t1"; gene_id "Ledus.S5G001500"
Ledus.S5	AUGUSTUS	CDS	190761	191219	0.99	+	0	transcript_id "Ledus.S5G001500.t1"; gene_id "Ledus.S5G001500"
Ledus.S5	AUGUSTUS	exon	190761	191219	.	+	.	transcript_id "Ledus.S5G001500.t1"; gene_id "Ledus.S5G001500"
Ledus.S5	AUGUSTUS	intron	191220	191368	.	+	.	transcript_id "Ledus.S5G001500.t1"; gene_id "Ledus.S5G001500"
Ledus.S5	AUGUSTUS	CDS	191369	192403	0.99	+	0	transcript_id "Ledus.S5G001500.t1"; gene_id "Ledus.S5G001500"
Ledus.S5	AUGUSTUS	exon	191369	192403	.	+	.	transcript_id "Ledus.S5G001500.t1"; gene_id "Ledus.S5G001500"
Ledus.S5	AUGUSTUS	stop_codon	192404	192406	.	+	0	transcript_id "Ledus.S5G001500.t1"; gene_id "Ledus.S5G001500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7197.t1 is derived from g6728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2074476	2076782	.	+	.	Ledus.C7G025800
Ledus.C7	AUGUSTUS	transcript	2074476	2076782	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	start_codon	2074476	2074478	.	+	0	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	CDS	2074476	2074913	0.84	+	0	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	exon	2074476	2074913	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	intron	2074914	2074984	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	CDS	2074985	2075170	1	+	0	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	exon	2074985	2075170	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	intron	2075171	2075252	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	CDS	2075253	2075337	1	+	0	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	exon	2075253	2075337	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	intron	2075338	2075426	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	CDS	2075427	2075574	1	+	2	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	exon	2075427	2075574	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	intron	2075575	2075650	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	CDS	2075651	2075731	1	+	1	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	exon	2075651	2075731	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	intron	2075732	2075821	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	CDS	2075822	2075993	1	+	1	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	exon	2075822	2075993	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	intron	2075994	2076059	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	CDS	2076060	2076219	1	+	0	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	exon	2076060	2076219	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	intron	2076220	2076299	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	CDS	2076300	2076403	1	+	2	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	exon	2076300	2076403	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	intron	2076404	2076485	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	CDS	2076486	2076782	1	+	0	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	exon	2076486	2076782	.	+	.	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
Ledus.C7	AUGUSTUS	stop_codon	2076783	2076785	.	+	0	transcript_id "Ledus.C7G025800.t1"; gene_id "Ledus.C7G025800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2929.t1 is derived from g364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4632502	4633389	.	-	.	Ledus.S1G035000
Ledus.S1	AUGUSTUS	transcript	4632502	4633389	.	-	.	transcript_id "Ledus.S1G035000.t1"; gene_id "Ledus.S1G035000"
Ledus.S1	AUGUSTUS	stop_codon	4632499	4632501	.	-	0	transcript_id "Ledus.S1G035000.t1"; gene_id "Ledus.S1G035000"
Ledus.S1	AUGUSTUS	CDS	4632502	4633389	1	-	0	transcript_id "Ledus.S1G035000.t1"; gene_id "Ledus.S1G035000"
Ledus.S1	AUGUSTUS	exon	4632502	4633389	.	-	.	transcript_id "Ledus.S1G035000.t1"; gene_id "Ledus.S1G035000"
Ledus.S1	AUGUSTUS	start_codon	4633387	4633389	.	-	0	transcript_id "Ledus.S1G035000.t1"; gene_id "Ledus.S1G035000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6181.t1 is derived from g3624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29440906	29443109	.	+	.	Ledus.S1G360200
Ledus.S1	AUGUSTUS	transcript	29440906	29443109	.	+	.	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	start_codon	29440906	29440908	.	+	0	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	CDS	29440906	29441530	0.16	+	0	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	exon	29440906	29441530	.	+	.	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	intron	29441531	29441616	.	+	.	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	CDS	29441617	29442113	1	+	2	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	exon	29441617	29442113	.	+	.	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	intron	29442114	29442204	.	+	.	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	CDS	29442205	29442315	0.91	+	0	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	exon	29442205	29442315	.	+	.	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	intron	29442316	29442432	.	+	.	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	CDS	29442433	29442809	0.91	+	0	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	exon	29442433	29442809	.	+	.	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	intron	29442810	29442895	.	+	.	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	CDS	29442896	29443109	0.77	+	1	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	exon	29442896	29443109	.	+	.	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
Ledus.S1	AUGUSTUS	stop_codon	29443110	29443112	.	+	0	transcript_id "Ledus.S1G360200.t1"; gene_id "Ledus.S1G360200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3134.t1 is derived from g569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6179650	6184273	.	+	.	Ledus.S1G055500
Ledus.S1	AUGUSTUS	transcript	6179650	6184273	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	start_codon	6179650	6179652	.	+	0	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	CDS	6179650	6179844	0.45	+	0	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	exon	6179650	6179844	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	intron	6179845	6179951	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	CDS	6179952	6180041	0.99	+	0	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	exon	6179952	6180041	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	intron	6180042	6180140	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	CDS	6180141	6180361	1	+	0	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	exon	6180141	6180361	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	intron	6180362	6180444	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	CDS	6180445	6180508	1	+	1	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	exon	6180445	6180508	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	intron	6180509	6180613	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	CDS	6180614	6181309	1	+	0	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	exon	6180614	6181309	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	intron	6181310	6181421	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	CDS	6181422	6181574	1	+	0	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	exon	6181422	6181574	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	intron	6181575	6181712	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	CDS	6181713	6182132	0.64	+	0	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	exon	6181713	6182132	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	intron	6182133	6182245	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	CDS	6182246	6182299	0.79	+	0	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	exon	6182246	6182299	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	intron	6182300	6182408	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	CDS	6182409	6182471	0.95	+	0	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	exon	6182409	6182471	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	intron	6182472	6182586	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	CDS	6182587	6183549	0.98	+	0	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	exon	6182587	6183549	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	intron	6183550	6183722	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	CDS	6183723	6183850	1	+	0	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	exon	6183723	6183850	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	intron	6183851	6184002	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	CDS	6184003	6184273	1	+	1	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	exon	6184003	6184273	.	+	.	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
Ledus.S1	AUGUSTUS	stop_codon	6184274	6184276	.	+	0	transcript_id "Ledus.S1G055500.t1"; gene_id "Ledus.S1G055500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11039.t1 is derived from g4657.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1355951	1357650	.	+	.	Ledus.S4G019500
Ledus.S4	AUGUSTUS	transcript	1355951	1357650	.	+	.	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	start_codon	1355951	1355953	.	+	0	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	CDS	1355951	1356241	1	+	0	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	exon	1355951	1356241	.	+	.	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	intron	1356242	1356429	.	+	.	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	CDS	1356430	1356552	0.97	+	0	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	exon	1356430	1356552	.	+	.	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	intron	1356553	1356663	.	+	.	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	CDS	1356664	1356843	0.97	+	0	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	exon	1356664	1356843	.	+	.	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	intron	1356844	1356919	.	+	.	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	CDS	1356920	1357001	1	+	0	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	exon	1356920	1357001	.	+	.	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	intron	1357002	1357078	.	+	.	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	CDS	1357079	1357143	1	+	2	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	exon	1357079	1357143	.	+	.	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	intron	1357144	1357254	.	+	.	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	CDS	1357255	1357650	0.92	+	0	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	exon	1357255	1357650	.	+	.	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
Ledus.S4	AUGUSTUS	stop_codon	1357651	1357653	.	+	0	transcript_id "Ledus.S4G019500.t1"; gene_id "Ledus.S4G019500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2497.t1 is derived from g9360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18477839	18480115	.	-	.	Ledus.S2G237900
Ledus.S2	AUGUSTUS	transcript	18477839	18480115	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	stop_codon	18477836	18477838	.	-	0	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	CDS	18477839	18478003	1	-	0	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	exon	18477839	18478003	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	intron	18478004	18478114	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	CDS	18478115	18478218	1	-	2	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	exon	18478115	18478218	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	intron	18478219	18478334	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	CDS	18478335	18478389	1	-	0	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	exon	18478335	18478389	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	intron	18478390	18478505	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	CDS	18478506	18478580	0.98	-	0	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	exon	18478506	18478580	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	intron	18478581	18478687	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	CDS	18478688	18478729	0.97	-	0	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	exon	18478688	18478729	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	intron	18478730	18478832	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	CDS	18478833	18478975	0.93	-	2	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	exon	18478833	18478975	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	intron	18478976	18479077	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	CDS	18479078	18479239	0.97	-	2	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	exon	18479078	18479239	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	intron	18479240	18480024	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	CDS	18480025	18480115	0.99	-	0	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	exon	18480025	18480115	.	-	.	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
Ledus.S2	AUGUSTUS	start_codon	18480113	18480115	.	-	0	transcript_id "Ledus.S2G237900.t1"; gene_id "Ledus.S2G237900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9844.t1 is derived from g10874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10483110	10489488	.	-	.	Ledus.S3G132100
Ledus.S3	AUGUSTUS	transcript	10483110	10489488	.	-	.	transcript_id "Ledus.S3G132100.t1"; gene_id "Ledus.S3G132100"
Ledus.S3	AUGUSTUS	stop_codon	10483107	10483109	.	-	0	transcript_id "Ledus.S3G132100.t1"; gene_id "Ledus.S3G132100"
Ledus.S3	AUGUSTUS	CDS	10483110	10487996	0.96	-	0	transcript_id "Ledus.S3G132100.t1"; gene_id "Ledus.S3G132100"
Ledus.S3	AUGUSTUS	exon	10483110	10487996	.	-	.	transcript_id "Ledus.S3G132100.t1"; gene_id "Ledus.S3G132100"
Ledus.S3	AUGUSTUS	intron	10487997	10488090	.	-	.	transcript_id "Ledus.S3G132100.t1"; gene_id "Ledus.S3G132100"
Ledus.S3	AUGUSTUS	CDS	10488091	10488459	0.56	-	0	transcript_id "Ledus.S3G132100.t1"; gene_id "Ledus.S3G132100"
Ledus.S3	AUGUSTUS	exon	10488091	10488459	.	-	.	transcript_id "Ledus.S3G132100.t1"; gene_id "Ledus.S3G132100"
Ledus.S3	AUGUSTUS	intron	10488460	10489413	.	-	.	transcript_id "Ledus.S3G132100.t1"; gene_id "Ledus.S3G132100"
Ledus.S3	AUGUSTUS	CDS	10489414	10489488	0.84	-	0	transcript_id "Ledus.S3G132100.t1"; gene_id "Ledus.S3G132100"
Ledus.S3	AUGUSTUS	exon	10489414	10489488	.	-	.	transcript_id "Ledus.S3G132100.t1"; gene_id "Ledus.S3G132100"
Ledus.S3	AUGUSTUS	start_codon	10489486	10489488	.	-	0	transcript_id "Ledus.S3G132100.t1"; gene_id "Ledus.S3G132100"
# This transcript jg3661.t2 is derived from g1097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3662.t1 is derived from g1098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10550247	10553696	.	+	.	Ledus.S1G108300
Ledus.S1	AUGUSTUS	transcript	10550247	10553696	.	+	.	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	start_codon	10550247	10550249	.	+	0	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	CDS	10550247	10551033	0.56	+	0	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	exon	10550247	10551033	.	+	.	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	intron	10551034	10551165	.	+	.	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	CDS	10551166	10551950	1	+	2	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	exon	10551166	10551950	.	+	.	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	intron	10551951	10552211	.	+	.	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	CDS	10552212	10552898	0.97	+	0	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	exon	10552212	10552898	.	+	.	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	intron	10552899	10553063	.	+	.	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	CDS	10553064	10553696	0.66	+	0	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	exon	10553064	10553696	.	+	.	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
Ledus.S1	AUGUSTUS	stop_codon	10553697	10553699	.	+	0	transcript_id "Ledus.S1G108300.t1"; gene_id "Ledus.S1G108300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8625.t1 is derived from g9655.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	763873	765516	.	+	.	Ledus.S3G010200
Ledus.S3	AUGUSTUS	transcript	763873	764821	.	+	.	transcript_id "Ledus.S3G010200.t1"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	start_codon	763873	763875	.	+	0	transcript_id "Ledus.S3G010200.t1"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	CDS	763873	764723	0.92	+	0	transcript_id "Ledus.S3G010200.t1"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	exon	763873	764723	.	+	.	transcript_id "Ledus.S3G010200.t1"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	intron	764724	764820	.	+	.	transcript_id "Ledus.S3G010200.t1"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	CDS	764821	764821	0.79	+	1	transcript_id "Ledus.S3G010200.t1"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	exon	764821	764821	.	+	.	transcript_id "Ledus.S3G010200.t1"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	stop_codon	764822	764824	.	+	0	transcript_id "Ledus.S3G010200.t1"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	transcript	763873	765233	.	+	.	transcript_id "Ledus.S3G010200.t2"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	start_codon	763873	763875	.	+	0	transcript_id "Ledus.S3G010200.t2"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	CDS	763873	765051	0.59	+	0	transcript_id "Ledus.S3G010200.t2"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	exon	763873	765051	.	+	.	transcript_id "Ledus.S3G010200.t2"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	intron	765052	765212	.	+	.	transcript_id "Ledus.S3G010200.t2"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	CDS	765213	765233	0.62	+	0	transcript_id "Ledus.S3G010200.t2"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	exon	765213	765233	.	+	.	transcript_id "Ledus.S3G010200.t2"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	stop_codon	765234	765236	.	+	0	transcript_id "Ledus.S3G010200.t2"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	transcript	763873	765516	.	+	.	transcript_id "Ledus.S3G010200.t3"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	start_codon	763873	763875	.	+	0	transcript_id "Ledus.S3G010200.t3"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	CDS	763873	765516	0.99	+	0	transcript_id "Ledus.S3G010200.t3"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	exon	763873	765516	.	+	.	transcript_id "Ledus.S3G010200.t3"; gene_id "Ledus.S3G010200"
Ledus.S3	AUGUSTUS	stop_codon	765517	765519	.	+	0	transcript_id "Ledus.S3G010200.t3"; gene_id "Ledus.S3G010200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6363.t1 is derived from g3806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30771131	30779845	.	-	.	Ledus.S1G378400
Ledus.S1	AUGUSTUS	transcript	30771131	30779845	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	stop_codon	30771128	30771130	.	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30771131	30771178	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30771131	30771178	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30771179	30771250	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30771251	30771331	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30771251	30771331	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30771332	30771642	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30771643	30771699	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30771643	30771699	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30771700	30771790	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30771791	30771928	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30771791	30771928	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30771929	30772005	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30772006	30772071	0.97	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30772006	30772071	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30772072	30772172	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30772173	30772256	0.97	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30772173	30772256	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30772257	30772693	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30772694	30772806	0.96	-	2	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30772694	30772806	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30772807	30772907	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30772908	30773022	0.88	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30772908	30773022	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30773023	30773126	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30773127	30773316	0.99	-	1	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30773127	30773316	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30773317	30773409	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30773410	30773519	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30773410	30773519	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30773520	30773708	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30773709	30773804	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30773709	30773804	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30773805	30773932	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30773933	30773995	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30773933	30773995	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30773996	30774157	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30774158	30774235	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30774158	30774235	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30774236	30774417	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30774418	30774530	1	-	2	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30774418	30774530	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30774531	30774688	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30774689	30774746	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30774689	30774746	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30774747	30774946	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30774947	30775070	1	-	1	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30774947	30775070	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30775071	30775149	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30775150	30775211	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30775150	30775211	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30775212	30775341	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30775342	30775406	1	-	2	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30775342	30775406	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30775407	30775497	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30775498	30775567	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30775498	30775567	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30775568	30775710	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30775711	30775770	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30775711	30775770	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30775771	30775921	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30775922	30776052	1	-	2	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30775922	30776052	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30776053	30776202	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30776203	30776278	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30776203	30776278	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30776279	30776535	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30776536	30776604	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30776536	30776604	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30776605	30776733	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30776734	30776781	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30776734	30776781	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30776782	30776962	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30776963	30777069	0.91	-	2	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30776963	30777069	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30777070	30777226	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30777227	30777290	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30777227	30777290	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30777291	30777401	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30777402	30777518	0.68	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30777402	30777518	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30777519	30777820	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30777821	30777933	0.99	-	2	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30777821	30777933	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30777934	30778143	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30778144	30778315	1	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30778144	30778315	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30778316	30778489	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30778490	30778546	0.7	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30778490	30778546	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30778547	30778676	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30778677	30778756	0.33	-	2	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30778677	30778756	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30778757	30778930	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30778931	30778977	0.95	-	1	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30778931	30778977	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30778978	30779111	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30779112	30779179	0.35	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30779112	30779179	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30779180	30779303	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30779304	30779398	0.56	-	2	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30779304	30779398	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30779399	30779596	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30779597	30779601	0.98	-	1	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30779597	30779601	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	intron	30779602	30779711	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	CDS	30779712	30779845	0.46	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	exon	30779712	30779845	.	-	.	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
Ledus.S1	AUGUSTUS	start_codon	30779843	30779845	.	-	0	transcript_id "Ledus.S1G378400.t1"; gene_id "Ledus.S1G378400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4090.t1 is derived from g1526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14643699	14646726	.	-	.	Ledus.S1G151100
Ledus.S1	AUGUSTUS	transcript	14643699	14646726	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	stop_codon	14643696	14643698	.	-	0	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	CDS	14643699	14643928	0.99	-	2	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	exon	14643699	14643928	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	intron	14643929	14644022	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	CDS	14644023	14644116	0.99	-	0	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	exon	14644023	14644116	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	intron	14644117	14644232	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	CDS	14644233	14644392	0.99	-	1	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	exon	14644233	14644392	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	intron	14644393	14644500	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	CDS	14644501	14644678	1	-	2	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	exon	14644501	14644678	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	intron	14644679	14644757	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	CDS	14644758	14644893	1	-	0	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	exon	14644758	14644893	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	intron	14644894	14644966	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	CDS	14644967	14645319	0.46	-	2	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	exon	14644967	14645319	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	intron	14645320	14645491	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	CDS	14645492	14645715	1	-	1	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	exon	14645492	14645715	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	intron	14645716	14645863	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	CDS	14645864	14645964	1	-	0	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	exon	14645864	14645964	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	intron	14645965	14646037	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	CDS	14646038	14646268	0.99	-	0	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	exon	14646038	14646268	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	intron	14646269	14646369	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	CDS	14646370	14646581	0.93	-	2	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	exon	14646370	14646581	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	intron	14646582	14646659	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	CDS	14646660	14646726	0.99	-	0	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	exon	14646660	14646726	.	-	.	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
Ledus.S1	AUGUSTUS	start_codon	14646724	14646726	.	-	0	transcript_id "Ledus.S1G151100.t1"; gene_id "Ledus.S1G151100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13004.t1 is derived from g6814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2412779	2413464	.	-	.	Ledus.S6G006600
Ledus.S6	AUGUSTUS	transcript	2412779	2413464	.	-	.	transcript_id "Ledus.S6G006600.t1"; gene_id "Ledus.S6G006600"
Ledus.S6	AUGUSTUS	stop_codon	2412776	2412778	.	-	0	transcript_id "Ledus.S6G006600.t1"; gene_id "Ledus.S6G006600"
Ledus.S6	AUGUSTUS	CDS	2412779	2412849	0.3	-	2	transcript_id "Ledus.S6G006600.t1"; gene_id "Ledus.S6G006600"
Ledus.S6	AUGUSTUS	exon	2412779	2412849	.	-	.	transcript_id "Ledus.S6G006600.t1"; gene_id "Ledus.S6G006600"
Ledus.S6	AUGUSTUS	intron	2412850	2412923	.	-	.	transcript_id "Ledus.S6G006600.t1"; gene_id "Ledus.S6G006600"
Ledus.S6	AUGUSTUS	CDS	2412924	2413464	0.48	-	0	transcript_id "Ledus.S6G006600.t1"; gene_id "Ledus.S6G006600"
Ledus.S6	AUGUSTUS	exon	2412924	2413464	.	-	.	transcript_id "Ledus.S6G006600.t1"; gene_id "Ledus.S6G006600"
Ledus.S6	AUGUSTUS	start_codon	2413462	2413464	.	-	0	transcript_id "Ledus.S6G006600.t1"; gene_id "Ledus.S6G006600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5923.t1 is derived from g3366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27864069	27865510	.	-	.	Ledus.S1G334400
Ledus.S1	AUGUSTUS	transcript	27864069	27865510	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	stop_codon	27864066	27864068	.	-	0	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	CDS	27864069	27864158	0.86	-	0	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	exon	27864069	27864158	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	intron	27864159	27864244	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	CDS	27864245	27864334	1	-	0	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	exon	27864245	27864334	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	intron	27864335	27864446	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	CDS	27864447	27864554	1	-	0	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	exon	27864447	27864554	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	intron	27864555	27864705	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	CDS	27864706	27864860	1	-	2	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	exon	27864706	27864860	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	intron	27864861	27864969	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	CDS	27864970	27865105	1	-	0	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	exon	27864970	27865105	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	intron	27865106	27865188	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	CDS	27865189	27865299	1	-	0	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	exon	27865189	27865299	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	intron	27865300	27865459	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	CDS	27865460	27865510	1	-	0	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	exon	27865460	27865510	.	-	.	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
Ledus.S1	AUGUSTUS	start_codon	27865508	27865510	.	-	0	transcript_id "Ledus.S1G334400.t1"; gene_id "Ledus.S1G334400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8867.t1 is derived from g9897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2601832	2602068	.	+	.	Ledus.S3G034400
Ledus.S3	AUGUSTUS	transcript	2601832	2602068	.	+	.	transcript_id "Ledus.S3G034400.t1"; gene_id "Ledus.S3G034400"
Ledus.S3	AUGUSTUS	start_codon	2601832	2601834	.	+	0	transcript_id "Ledus.S3G034400.t1"; gene_id "Ledus.S3G034400"
Ledus.S3	AUGUSTUS	CDS	2601832	2602068	0.62	+	0	transcript_id "Ledus.S3G034400.t1"; gene_id "Ledus.S3G034400"
Ledus.S3	AUGUSTUS	exon	2601832	2602068	.	+	.	transcript_id "Ledus.S3G034400.t1"; gene_id "Ledus.S3G034400"
Ledus.S3	AUGUSTUS	stop_codon	2602069	2602071	.	+	0	transcript_id "Ledus.S3G034400.t1"; gene_id "Ledus.S3G034400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4625.t1 is derived from g2062.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18338036	18341134	.	-	.	Ledus.S1G204600
Ledus.S1	AUGUSTUS	transcript	18338036	18341134	.	-	.	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	stop_codon	18338033	18338035	.	-	0	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	CDS	18338036	18340631	0.29	-	1	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	exon	18338036	18340631	.	-	.	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	intron	18340632	18340763	.	-	.	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	CDS	18340764	18340833	0.36	-	2	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	exon	18340764	18340833	.	-	.	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	intron	18340834	18340912	.	-	.	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	CDS	18340913	18340963	0.38	-	2	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	exon	18340913	18340963	.	-	.	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	intron	18340964	18341109	.	-	.	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	CDS	18341110	18341134	0.92	-	0	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	exon	18341110	18341134	.	-	.	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
Ledus.S1	AUGUSTUS	start_codon	18341132	18341134	.	-	0	transcript_id "Ledus.S1G204600.t1"; gene_id "Ledus.S1G204600"
# This transcript jg10823.t2 is derived from g11855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10824.t1 is derived from g11856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18060630	18066652	.	-	.	Ledus.S3G230100
Ledus.S3	AUGUSTUS	transcript	18060630	18066652	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	stop_codon	18060627	18060629	.	-	0	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18060630	18060676	0.43	-	2	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18060630	18060676	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18060677	18060792	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18060793	18060859	0.43	-	0	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18060793	18060859	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18060860	18060945	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18060946	18061068	1	-	0	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18060946	18061068	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18061069	18061166	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18061167	18061226	1	-	0	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18061167	18061226	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18061227	18061390	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18061391	18061585	0.64	-	0	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18061391	18061585	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18061586	18061703	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18061704	18061919	0.98	-	0	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18061704	18061919	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18061920	18062039	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18062040	18062243	1	-	0	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18062040	18062243	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18062244	18062384	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18062385	18062606	1	-	0	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18062385	18062606	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18062607	18062806	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18062807	18062998	0.42	-	0	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18062807	18062998	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18062999	18063400	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18063401	18065178	0.96	-	2	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18063401	18065178	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18065179	18065376	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18065377	18065489	1	-	1	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18065377	18065489	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18065490	18065626	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18065627	18065682	1	-	0	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18065627	18065682	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18065683	18065770	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18065771	18065823	1	-	2	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18065771	18065823	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18065824	18065926	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18065927	18066030	1	-	1	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18065927	18066030	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	intron	18066031	18066608	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	CDS	18066609	18066652	0.82	-	0	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	exon	18066609	18066652	.	-	.	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
Ledus.S3	AUGUSTUS	start_codon	18066650	18066652	.	-	0	transcript_id "Ledus.S3G230100.t1"; gene_id "Ledus.S3G230100"
# This transcript jg10324.t2 is derived from g11354.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10325.t1 is derived from g11355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14231665	14233448	.	+	.	Ledus.S3G180200
Ledus.S3	AUGUSTUS	transcript	14231665	14233448	.	+	.	transcript_id "Ledus.S3G180200.t1"; gene_id "Ledus.S3G180200"
Ledus.S3	AUGUSTUS	start_codon	14231665	14231667	.	+	0	transcript_id "Ledus.S3G180200.t1"; gene_id "Ledus.S3G180200"
Ledus.S3	AUGUSTUS	CDS	14231665	14232821	0.47	+	0	transcript_id "Ledus.S3G180200.t1"; gene_id "Ledus.S3G180200"
Ledus.S3	AUGUSTUS	exon	14231665	14232821	.	+	.	transcript_id "Ledus.S3G180200.t1"; gene_id "Ledus.S3G180200"
Ledus.S3	AUGUSTUS	intron	14232822	14232913	.	+	.	transcript_id "Ledus.S3G180200.t1"; gene_id "Ledus.S3G180200"
Ledus.S3	AUGUSTUS	CDS	14232914	14233448	0.74	+	1	transcript_id "Ledus.S3G180200.t1"; gene_id "Ledus.S3G180200"
Ledus.S3	AUGUSTUS	exon	14232914	14233448	.	+	.	transcript_id "Ledus.S3G180200.t1"; gene_id "Ledus.S3G180200"
Ledus.S3	AUGUSTUS	stop_codon	14233449	14233451	.	+	0	transcript_id "Ledus.S3G180200.t1"; gene_id "Ledus.S3G180200"
# This transcript jg757.t2 is derived from g7618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg758.t1 is derived from g7619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4853836	4854188	.	-	.	Ledus.S2G064000
Ledus.S2	AUGUSTUS	transcript	4853836	4854188	.	-	.	transcript_id "Ledus.S2G064000.t1"; gene_id "Ledus.S2G064000"
Ledus.S2	AUGUSTUS	stop_codon	4853833	4853835	.	-	0	transcript_id "Ledus.S2G064000.t1"; gene_id "Ledus.S2G064000"
Ledus.S2	AUGUSTUS	CDS	4853836	4853924	0.82	-	2	transcript_id "Ledus.S2G064000.t1"; gene_id "Ledus.S2G064000"
Ledus.S2	AUGUSTUS	exon	4853836	4853924	.	-	.	transcript_id "Ledus.S2G064000.t1"; gene_id "Ledus.S2G064000"
Ledus.S2	AUGUSTUS	intron	4853925	4854076	.	-	.	transcript_id "Ledus.S2G064000.t1"; gene_id "Ledus.S2G064000"
Ledus.S2	AUGUSTUS	CDS	4854077	4854188	0.86	-	0	transcript_id "Ledus.S2G064000.t1"; gene_id "Ledus.S2G064000"
Ledus.S2	AUGUSTUS	exon	4854077	4854188	.	-	.	transcript_id "Ledus.S2G064000.t1"; gene_id "Ledus.S2G064000"
Ledus.S2	AUGUSTUS	start_codon	4854186	4854188	.	-	0	transcript_id "Ledus.S2G064000.t1"; gene_id "Ledus.S2G064000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8795.t1 is derived from g9825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2023346	2025513	.	+	.	Ledus.S3G027200
Ledus.S3	AUGUSTUS	transcript	2023346	2025513	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	start_codon	2023346	2023348	.	+	0	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	CDS	2023346	2023521	0.92	+	0	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	exon	2023346	2023521	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	intron	2023522	2023625	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	CDS	2023626	2023868	0.79	+	1	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	exon	2023626	2023868	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	intron	2023869	2024063	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	CDS	2024064	2024110	1	+	1	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	exon	2024064	2024110	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	intron	2024111	2024204	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	CDS	2024205	2024323	1	+	2	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	exon	2024205	2024323	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	intron	2024324	2024418	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	CDS	2024419	2024567	1	+	0	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	exon	2024419	2024567	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	intron	2024568	2024717	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	CDS	2024718	2024827	1	+	1	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	exon	2024718	2024827	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	intron	2024828	2024924	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	CDS	2024925	2025024	0.63	+	2	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	exon	2024925	2025024	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	intron	2025025	2025135	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	CDS	2025136	2025259	0.67	+	1	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	exon	2025136	2025259	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	intron	2025260	2025360	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	CDS	2025361	2025513	1	+	0	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	exon	2025361	2025513	.	+	.	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
Ledus.S3	AUGUSTUS	stop_codon	2025514	2025516	.	+	0	transcript_id "Ledus.S3G027200.t1"; gene_id "Ledus.S3G027200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg333.t1 is derived from g7194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1787608	1792063	.	+	.	Ledus.S2G021500
Ledus.S2	AUGUSTUS	transcript	1787608	1792063	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	start_codon	1787608	1787610	.	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1787608	1789242	0.92	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1787608	1789242	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1789243	1789387	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1789388	1789531	0.92	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1789388	1789531	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1789532	1789655	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1789656	1789754	0.94	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1789656	1789754	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1789755	1789908	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1789909	1790115	1	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1789909	1790115	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1790116	1790260	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1790261	1790320	1	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1790261	1790320	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1790321	1790457	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1790458	1790565	1	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1790458	1790565	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1790566	1790658	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1790659	1790874	1	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1790659	1790874	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1790875	1791052	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1791053	1791151	1	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1791053	1791151	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1791152	1791303	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1791304	1791414	1	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1791304	1791414	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1791415	1791498	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1791499	1791624	1	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1791499	1791624	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1791625	1791705	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1791706	1791849	1	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1791706	1791849	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1791850	1791955	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1791956	1792063	1	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1791956	1792063	.	+	.	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	stop_codon	1792064	1792066	.	+	0	transcript_id "Ledus.S2G021500.t1"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	transcript	1787608	1792063	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	start_codon	1787608	1787610	.	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1787608	1789242	0.88	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1787608	1789242	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1789243	1789387	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1789388	1789531	0.93	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1789388	1789531	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1789532	1789655	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1789656	1789754	0.94	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1789656	1789754	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1789755	1789908	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1789909	1790115	1	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1789909	1790115	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1790116	1790260	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1790261	1790320	1	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1790261	1790320	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1790321	1790457	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1790458	1790565	1	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1790458	1790565	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1790566	1790658	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1790659	1790748	0.51	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1790659	1790748	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1790749	1790897	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1790898	1790906	0.87	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1790898	1790906	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1790907	1791052	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1791053	1791151	0.99	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1791053	1791151	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1791152	1791303	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1791304	1791414	1	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1791304	1791414	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1791415	1791498	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1791499	1791624	1	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1791499	1791624	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1791625	1791705	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1791706	1791849	1	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1791706	1791849	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	intron	1791850	1791955	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	CDS	1791956	1792063	1	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	exon	1791956	1792063	.	+	.	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
Ledus.S2	AUGUSTUS	stop_codon	1792064	1792066	.	+	0	transcript_id "Ledus.S2G021500.t2"; gene_id "Ledus.S2G021500"
# This transcript jg11130.t2 is derived from g4748.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11131.t1 is derived from g4749.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2092179	2092946	.	+	.	Ledus.S4G028700
Ledus.S4	AUGUSTUS	transcript	2092179	2092946	.	+	.	transcript_id "Ledus.S4G028700.t1"; gene_id "Ledus.S4G028700"
Ledus.S4	AUGUSTUS	start_codon	2092179	2092181	.	+	0	transcript_id "Ledus.S4G028700.t1"; gene_id "Ledus.S4G028700"
Ledus.S4	AUGUSTUS	CDS	2092179	2092268	1	+	0	transcript_id "Ledus.S4G028700.t1"; gene_id "Ledus.S4G028700"
Ledus.S4	AUGUSTUS	exon	2092179	2092268	.	+	.	transcript_id "Ledus.S4G028700.t1"; gene_id "Ledus.S4G028700"
Ledus.S4	AUGUSTUS	intron	2092269	2092397	.	+	.	transcript_id "Ledus.S4G028700.t1"; gene_id "Ledus.S4G028700"
Ledus.S4	AUGUSTUS	CDS	2092398	2092946	1	+	0	transcript_id "Ledus.S4G028700.t1"; gene_id "Ledus.S4G028700"
Ledus.S4	AUGUSTUS	exon	2092398	2092946	.	+	.	transcript_id "Ledus.S4G028700.t1"; gene_id "Ledus.S4G028700"
Ledus.S4	AUGUSTUS	stop_codon	2092947	2092949	.	+	0	transcript_id "Ledus.S4G028700.t1"; gene_id "Ledus.S4G028700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3002.t1 is derived from g437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5223906	5226232	.	-	.	Ledus.S1G042300
Ledus.S1	AUGUSTUS	transcript	5223906	5226232	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	stop_codon	5223903	5223905	.	-	0	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	CDS	5223906	5224049	0.98	-	0	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	exon	5223906	5224049	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	intron	5224050	5224131	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	CDS	5224132	5224253	0.93	-	2	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	exon	5224132	5224253	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	intron	5224254	5224364	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	CDS	5224365	5224494	0.42	-	0	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	exon	5224365	5224494	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	intron	5224495	5224602	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	CDS	5224603	5224677	0.94	-	0	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	exon	5224603	5224677	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	intron	5224678	5224750	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	CDS	5224751	5224793	0.98	-	1	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	exon	5224751	5224793	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	intron	5224794	5224902	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	CDS	5224903	5225037	0.96	-	1	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	exon	5224903	5225037	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	intron	5225038	5225134	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	CDS	5225135	5225474	1	-	2	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	exon	5225135	5225474	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	intron	5225475	5225718	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	CDS	5225719	5225747	0.88	-	1	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	exon	5225719	5225747	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	intron	5225748	5225866	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	CDS	5225867	5225983	1	-	1	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	exon	5225867	5225983	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	intron	5225984	5226191	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	CDS	5226192	5226232	0.27	-	0	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	exon	5226192	5226232	.	-	.	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
Ledus.S1	AUGUSTUS	start_codon	5226230	5226232	.	-	0	transcript_id "Ledus.S1G042300.t1"; gene_id "Ledus.S1G042300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3179.t1 is derived from g614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6599194	6600575	.	+	.	Ledus.S1G060000
Ledus.S1	AUGUSTUS	transcript	6599194	6600575	.	+	.	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	start_codon	6599194	6599196	.	+	0	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	CDS	6599194	6599310	0.5	+	0	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	exon	6599194	6599310	.	+	.	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	intron	6599311	6599521	.	+	.	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	CDS	6599522	6599528	0.91	+	0	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	exon	6599522	6599528	.	+	.	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	intron	6599529	6599605	.	+	.	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	CDS	6599606	6599827	0.65	+	2	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	exon	6599606	6599827	.	+	.	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	intron	6599828	6600024	.	+	.	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	CDS	6600025	6600575	0.87	+	2	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	exon	6600025	6600575	.	+	.	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
Ledus.S1	AUGUSTUS	stop_codon	6600576	6600578	.	+	0	transcript_id "Ledus.S1G060000.t1"; gene_id "Ledus.S1G060000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7191.t1 is derived from g6722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2049359	2052646	.	-	.	Ledus.C7G025200
Ledus.C7	AUGUSTUS	transcript	2049359	2052646	.	-	.	transcript_id "Ledus.C7G025200.t1"; gene_id "Ledus.C7G025200"
Ledus.C7	AUGUSTUS	stop_codon	2049356	2049358	.	-	0	transcript_id "Ledus.C7G025200.t1"; gene_id "Ledus.C7G025200"
Ledus.C7	AUGUSTUS	CDS	2049359	2049480	0.76	-	2	transcript_id "Ledus.C7G025200.t1"; gene_id "Ledus.C7G025200"
Ledus.C7	AUGUSTUS	exon	2049359	2049480	.	-	.	transcript_id "Ledus.C7G025200.t1"; gene_id "Ledus.C7G025200"
Ledus.C7	AUGUSTUS	intron	2049481	2049616	.	-	.	transcript_id "Ledus.C7G025200.t1"; gene_id "Ledus.C7G025200"
Ledus.C7	AUGUSTUS	CDS	2049617	2052356	0.82	-	0	transcript_id "Ledus.C7G025200.t1"; gene_id "Ledus.C7G025200"
Ledus.C7	AUGUSTUS	exon	2049617	2052356	.	-	.	transcript_id "Ledus.C7G025200.t1"; gene_id "Ledus.C7G025200"
Ledus.C7	AUGUSTUS	intron	2052357	2052502	.	-	.	transcript_id "Ledus.C7G025200.t1"; gene_id "Ledus.C7G025200"
Ledus.C7	AUGUSTUS	CDS	2052503	2052646	0.3	-	0	transcript_id "Ledus.C7G025200.t1"; gene_id "Ledus.C7G025200"
Ledus.C7	AUGUSTUS	exon	2052503	2052646	.	-	.	transcript_id "Ledus.C7G025200.t1"; gene_id "Ledus.C7G025200"
Ledus.C7	AUGUSTUS	start_codon	2052644	2052646	.	-	0	transcript_id "Ledus.C7G025200.t1"; gene_id "Ledus.C7G025200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7877.t1 is derived from g12548.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7583175	7583966	.	-	.	Ledus.S5G065500
Ledus.S5	AUGUSTUS	transcript	7583175	7583966	.	-	.	transcript_id "Ledus.S5G065500.t1"; gene_id "Ledus.S5G065500"
Ledus.S5	AUGUSTUS	stop_codon	7583172	7583174	.	-	0	transcript_id "Ledus.S5G065500.t1"; gene_id "Ledus.S5G065500"
Ledus.S5	AUGUSTUS	CDS	7583175	7583966	1	-	0	transcript_id "Ledus.S5G065500.t1"; gene_id "Ledus.S5G065500"
Ledus.S5	AUGUSTUS	exon	7583175	7583966	.	-	.	transcript_id "Ledus.S5G065500.t1"; gene_id "Ledus.S5G065500"
Ledus.S5	AUGUSTUS	start_codon	7583964	7583966	.	-	0	transcript_id "Ledus.S5G065500.t1"; gene_id "Ledus.S5G065500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12640.t1 is derived from g6262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13564995	13565548	.	-	.	Ledus.S4G179600
Ledus.S4	AUGUSTUS	transcript	13564995	13565548	.	-	.	transcript_id "Ledus.S4G179600.t1"; gene_id "Ledus.S4G179600"
Ledus.S4	AUGUSTUS	stop_codon	13564992	13564994	.	-	0	transcript_id "Ledus.S4G179600.t1"; gene_id "Ledus.S4G179600"
Ledus.S4	AUGUSTUS	CDS	13564995	13565178	1	-	1	transcript_id "Ledus.S4G179600.t1"; gene_id "Ledus.S4G179600"
Ledus.S4	AUGUSTUS	exon	13564995	13565178	.	-	.	transcript_id "Ledus.S4G179600.t1"; gene_id "Ledus.S4G179600"
Ledus.S4	AUGUSTUS	intron	13565179	13565261	.	-	.	transcript_id "Ledus.S4G179600.t1"; gene_id "Ledus.S4G179600"
Ledus.S4	AUGUSTUS	CDS	13565262	13565377	1	-	0	transcript_id "Ledus.S4G179600.t1"; gene_id "Ledus.S4G179600"
Ledus.S4	AUGUSTUS	exon	13565262	13565377	.	-	.	transcript_id "Ledus.S4G179600.t1"; gene_id "Ledus.S4G179600"
Ledus.S4	AUGUSTUS	intron	13565378	13565449	.	-	.	transcript_id "Ledus.S4G179600.t1"; gene_id "Ledus.S4G179600"
Ledus.S4	AUGUSTUS	CDS	13565450	13565548	0.98	-	0	transcript_id "Ledus.S4G179600.t1"; gene_id "Ledus.S4G179600"
Ledus.S4	AUGUSTUS	exon	13565450	13565548	.	-	.	transcript_id "Ledus.S4G179600.t1"; gene_id "Ledus.S4G179600"
Ledus.S4	AUGUSTUS	start_codon	13565546	13565548	.	-	0	transcript_id "Ledus.S4G179600.t1"; gene_id "Ledus.S4G179600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10601.t1 is derived from g11631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16306095	16309921	.	+	.	Ledus.S3G207800
Ledus.S3	AUGUSTUS	transcript	16306095	16309921	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	start_codon	16306095	16306097	.	+	0	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16306095	16306127	0.97	+	0	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16306095	16306127	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16306128	16306429	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16306430	16306521	1	+	0	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16306430	16306521	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16306522	16306666	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16306667	16306801	1	+	1	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16306667	16306801	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16306802	16307037	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16307038	16307094	1	+	1	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16307038	16307094	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16307095	16307187	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16307188	16307260	1	+	1	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16307188	16307260	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16307261	16307446	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16307447	16307605	1	+	0	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16307447	16307605	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16307606	16307774	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16307775	16307924	1	+	0	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16307775	16307924	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16307925	16308100	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16308101	16308356	1	+	0	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16308101	16308356	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16308357	16308454	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16308455	16308576	1	+	2	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16308455	16308576	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16308577	16308664	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16308665	16308751	1	+	0	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16308665	16308751	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16308752	16308849	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16308850	16308938	1	+	0	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16308850	16308938	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16308939	16309036	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16309037	16309099	0.95	+	1	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16309037	16309099	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16309100	16309385	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16309386	16309482	1	+	1	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16309386	16309482	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16309483	16309614	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16309615	16309773	1	+	0	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16309615	16309773	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16309774	16309912	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16309913	16309921	1	+	0	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16309913	16309921	.	+	.	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	stop_codon	16309922	16309924	.	+	0	transcript_id "Ledus.S3G207800.t1"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	transcript	16306095	16309921	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	start_codon	16306095	16306097	.	+	0	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16306095	16306127	0.99	+	0	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16306095	16306127	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16306128	16306429	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16306430	16306500	0.99	+	0	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16306430	16306500	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16306501	16306666	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16306667	16306801	1	+	1	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16306667	16306801	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16306802	16307037	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16307038	16307094	1	+	1	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16307038	16307094	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16307095	16307187	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16307188	16307260	1	+	1	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16307188	16307260	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16307261	16307446	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16307447	16307605	1	+	0	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16307447	16307605	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16307606	16307774	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16307775	16307924	1	+	0	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16307775	16307924	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16307925	16308100	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16308101	16308356	1	+	0	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16308101	16308356	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16308357	16308454	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16308455	16308576	1	+	2	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16308455	16308576	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16308577	16308664	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16308665	16308751	1	+	0	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16308665	16308751	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16308752	16308849	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16308850	16308938	1	+	0	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16308850	16308938	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16308939	16309036	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16309037	16309099	0.92	+	1	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16309037	16309099	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16309100	16309385	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16309386	16309482	1	+	1	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16309386	16309482	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16309483	16309614	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16309615	16309773	1	+	0	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16309615	16309773	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	intron	16309774	16309912	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	CDS	16309913	16309921	1	+	0	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	exon	16309913	16309921	.	+	.	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
Ledus.S3	AUGUSTUS	stop_codon	16309922	16309924	.	+	0	transcript_id "Ledus.S3G207800.t2"; gene_id "Ledus.S3G207800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8003.t1 is derived from g12674.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8420869	8424535	.	-	.	Ledus.S5G078100
Ledus.S5	AUGUSTUS	transcript	8420869	8424535	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	stop_codon	8420866	8420868	.	-	0	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	CDS	8420869	8421041	0.61	-	2	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	exon	8420869	8421041	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	intron	8421042	8421129	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	CDS	8421130	8421319	1	-	0	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	exon	8421130	8421319	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	intron	8421320	8421405	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	CDS	8421406	8421564	0.97	-	0	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	exon	8421406	8421564	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	intron	8421565	8421698	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	CDS	8421699	8421809	0.97	-	0	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	exon	8421699	8421809	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	intron	8421810	8421952	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	CDS	8421953	8422042	1	-	0	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	exon	8421953	8422042	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	intron	8422043	8422122	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	CDS	8422123	8422193	1	-	2	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	exon	8422123	8422193	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	intron	8422194	8422307	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	CDS	8422308	8423005	0.66	-	1	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	exon	8422308	8423005	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	intron	8423006	8423247	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	CDS	8423248	8423331	0.88	-	1	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	exon	8423248	8423331	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	intron	8423332	8423565	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	CDS	8423566	8423649	0.85	-	1	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	exon	8423566	8423649	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	intron	8423650	8423766	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	CDS	8423767	8423868	0.97	-	1	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	exon	8423767	8423868	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	intron	8423869	8423985	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	CDS	8423986	8424077	1	-	0	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	exon	8423986	8424077	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	intron	8424078	8424172	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	CDS	8424173	8424535	1	-	0	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	exon	8424173	8424535	.	-	.	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
Ledus.S5	AUGUSTUS	start_codon	8424533	8424535	.	-	0	transcript_id "Ledus.S5G078100.t1"; gene_id "Ledus.S5G078100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg800.t1 is derived from g7661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5202351	5207929	.	-	.	Ledus.S2G068200
Ledus.S2	AUGUSTUS	transcript	5202351	5207929	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	stop_codon	5202348	5202350	.	-	0	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5202351	5202446	0.44	-	0	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5202351	5202446	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5202447	5202535	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5202536	5202692	1	-	1	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5202536	5202692	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5202693	5202772	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5202773	5202893	1	-	2	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5202773	5202893	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5202894	5203031	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5203032	5203065	1	-	0	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5203032	5203065	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5203066	5203169	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5203170	5204161	0.99	-	2	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5203170	5204161	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5204162	5204246	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5204247	5204558	1	-	2	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5204247	5204558	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5204559	5204687	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5204688	5204824	0.99	-	1	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5204688	5204824	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5204825	5205042	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5205043	5205178	0.95	-	2	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5205043	5205178	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5205179	5205303	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5205304	5206484	1	-	1	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5205304	5206484	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5206485	5206666	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5206667	5206725	1	-	0	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5206667	5206725	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5206726	5206861	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5206862	5206914	1	-	2	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5206862	5206914	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5206915	5207083	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5207084	5207175	0.99	-	1	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5207084	5207175	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5207176	5207319	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5207320	5207590	1	-	2	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5207320	5207590	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5207591	5207805	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5207806	5207929	0.62	-	0	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5207806	5207929	.	-	.	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	start_codon	5207927	5207929	.	-	0	transcript_id "Ledus.S2G068200.t1"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	transcript	5202351	5207929	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	stop_codon	5202348	5202350	.	-	0	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5202351	5202446	0.41	-	0	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5202351	5202446	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5202447	5202535	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5202536	5202692	1	-	1	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5202536	5202692	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5202693	5202772	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5202773	5202893	1	-	2	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5202773	5202893	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5202894	5203031	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5203032	5203065	1	-	0	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5203032	5203065	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5203066	5203169	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5203170	5204161	0.98	-	2	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5203170	5204161	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5204162	5204246	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5204247	5204558	1	-	2	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5204247	5204558	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5204559	5204687	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5204688	5204824	1	-	1	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5204688	5204824	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5204825	5205042	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5205043	5205178	0.97	-	2	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5205043	5205178	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5205179	5205303	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5205304	5206484	1	-	1	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5205304	5206484	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5206485	5206666	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5206667	5206725	1	-	0	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5206667	5206725	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5206726	5206861	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5206862	5206914	1	-	2	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5206862	5206914	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5206915	5207083	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5207084	5207178	1	-	1	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5207084	5207178	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5207179	5207319	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5207320	5207590	0.98	-	2	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5207320	5207590	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	intron	5207591	5207805	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	CDS	5207806	5207929	0.58	-	0	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	exon	5207806	5207929	.	-	.	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
Ledus.S2	AUGUSTUS	start_codon	5207927	5207929	.	-	0	transcript_id "Ledus.S2G068200.t2"; gene_id "Ledus.S2G068200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg656.t1 is derived from g7517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3925636	3927966	.	+	.	Ledus.S2G053800
Ledus.S2	AUGUSTUS	transcript	3925636	3927966	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	start_codon	3925636	3925638	.	+	0	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	CDS	3925636	3925694	1	+	0	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	exon	3925636	3925694	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	intron	3925695	3925798	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	CDS	3925799	3925910	1	+	1	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	exon	3925799	3925910	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	intron	3925911	3926108	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	CDS	3926109	3926127	1	+	0	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	exon	3926109	3926127	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	intron	3926128	3926277	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	CDS	3926278	3926366	1	+	2	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	exon	3926278	3926366	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	intron	3926367	3926505	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	CDS	3926506	3926559	1	+	0	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	exon	3926506	3926559	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	intron	3926560	3926649	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	CDS	3926650	3926720	1	+	0	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	exon	3926650	3926720	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	intron	3926721	3926833	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	CDS	3926834	3926915	1	+	1	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	exon	3926834	3926915	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	intron	3926916	3927064	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	CDS	3927065	3927161	1	+	0	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	exon	3927065	3927161	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	intron	3927162	3927335	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	CDS	3927336	3927361	0.63	+	2	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	exon	3927336	3927361	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	intron	3927362	3927903	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	CDS	3927904	3927966	0.62	+	0	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	exon	3927904	3927966	.	+	.	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
Ledus.S2	AUGUSTUS	stop_codon	3927967	3927969	.	+	0	transcript_id "Ledus.S2G053800.t1"; gene_id "Ledus.S2G053800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12473.t1 is derived from g6094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12195292	12198107	.	+	.	Ledus.S4G162900
Ledus.S4	AUGUSTUS	transcript	12195292	12198107	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	start_codon	12195292	12195294	.	+	0	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	CDS	12195292	12195595	0.76	+	0	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	exon	12195292	12195595	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	intron	12195596	12195665	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	CDS	12195666	12195775	1	+	2	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	exon	12195666	12195775	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	intron	12195776	12195866	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	CDS	12195867	12196145	0.57	+	0	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	exon	12195867	12196145	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	intron	12196146	12196246	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	CDS	12196247	12196383	0.92	+	0	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	exon	12196247	12196383	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	intron	12196384	12196490	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	CDS	12196491	12196674	0.95	+	1	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	exon	12196491	12196674	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	intron	12196675	12196754	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	CDS	12196755	12197456	1	+	0	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	exon	12196755	12197456	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	intron	12197457	12197681	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	CDS	12197682	12197790	0.99	+	0	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	exon	12197682	12197790	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	intron	12197791	12197868	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	CDS	12197869	12198107	0.82	+	2	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	exon	12197869	12198107	.	+	.	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
Ledus.S4	AUGUSTUS	stop_codon	12198108	12198110	.	+	0	transcript_id "Ledus.S4G162900.t1"; gene_id "Ledus.S4G162900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10661.t1 is derived from g11691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16922488	16924400	.	+	.	Ledus.S3G213800
Ledus.S3	AUGUSTUS	transcript	16922488	16924400	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	start_codon	16922488	16922490	.	+	0	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	CDS	16922488	16922830	0.87	+	0	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	exon	16922488	16922830	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	intron	16922831	16922910	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	CDS	16922911	16923137	1	+	2	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	exon	16922911	16923137	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	intron	16923138	16923224	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	CDS	16923225	16923325	1	+	0	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	exon	16923225	16923325	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	intron	16923326	16923407	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	CDS	16923408	16923528	1	+	1	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	exon	16923408	16923528	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	intron	16923529	16923619	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	CDS	16923620	16923742	1	+	0	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	exon	16923620	16923742	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	intron	16923743	16923850	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	CDS	16923851	16923925	0.99	+	0	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	exon	16923851	16923925	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	intron	16923926	16924040	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	CDS	16924041	16924156	1	+	0	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	exon	16924041	16924156	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	intron	16924157	16924243	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	CDS	16924244	16924400	1	+	1	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	exon	16924244	16924400	.	+	.	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
Ledus.S3	AUGUSTUS	stop_codon	16924401	16924403	.	+	0	transcript_id "Ledus.S3G213800.t1"; gene_id "Ledus.S3G213800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11674.t1 is derived from g5293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5907911	5910208	.	-	.	Ledus.S4G083000
Ledus.S4	AUGUSTUS	transcript	5908641	5910208	.	-	.	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	stop_codon	5908638	5908640	.	-	0	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	CDS	5908641	5908649	1	-	0	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	exon	5908641	5908649	.	-	.	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	intron	5908650	5908866	.	-	.	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	CDS	5908867	5909071	1	-	1	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	exon	5908867	5909071	.	-	.	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	intron	5909072	5909166	.	-	.	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	CDS	5909167	5909271	0.99	-	1	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	exon	5909167	5909271	.	-	.	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	intron	5909272	5909387	.	-	.	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	CDS	5909388	5909395	1	-	0	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	exon	5909388	5909395	.	-	.	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	intron	5909396	5910142	.	-	.	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	CDS	5910143	5910208	0.8	-	0	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	exon	5910143	5910208	.	-	.	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	start_codon	5910206	5910208	.	-	0	transcript_id "Ledus.S4G083000.t1"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	transcript	5907911	5910208	.	-	.	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	stop_codon	5907908	5907910	.	-	0	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	CDS	5907911	5908012	1	-	0	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	exon	5907911	5908012	.	-	.	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	intron	5908013	5908866	.	-	.	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	CDS	5908867	5909071	1	-	1	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	exon	5908867	5909071	.	-	.	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	intron	5909072	5909166	.	-	.	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	CDS	5909167	5909271	1	-	1	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	exon	5909167	5909271	.	-	.	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	intron	5909272	5909387	.	-	.	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	CDS	5909388	5909395	1	-	0	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	exon	5909388	5909395	.	-	.	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	intron	5909396	5910142	.	-	.	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	CDS	5910143	5910208	0.77	-	0	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	exon	5910143	5910208	.	-	.	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
Ledus.S4	AUGUSTUS	start_codon	5910206	5910208	.	-	0	transcript_id "Ledus.S4G083000.t2"; gene_id "Ledus.S4G083000"
# This transcript jg9806.t2 is derived from g10836.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9807.t1 is derived from g10837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9976388	9976603	.	-	.	Ledus.S3G128400
Ledus.S3	AUGUSTUS	transcript	9976388	9976603	.	-	.	transcript_id "Ledus.S3G128400.t1"; gene_id "Ledus.S3G128400"
Ledus.S3	AUGUSTUS	stop_codon	9976385	9976387	.	-	0	transcript_id "Ledus.S3G128400.t1"; gene_id "Ledus.S3G128400"
Ledus.S3	AUGUSTUS	CDS	9976388	9976603	0.83	-	0	transcript_id "Ledus.S3G128400.t1"; gene_id "Ledus.S3G128400"
Ledus.S3	AUGUSTUS	exon	9976388	9976603	.	-	.	transcript_id "Ledus.S3G128400.t1"; gene_id "Ledus.S3G128400"
Ledus.S3	AUGUSTUS	start_codon	9976601	9976603	.	-	0	transcript_id "Ledus.S3G128400.t1"; gene_id "Ledus.S3G128400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4787.t1 is derived from g2225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19766337	19774306	.	+	.	Ledus.S1G220800
Ledus.S1	AUGUSTUS	transcript	19766337	19774306	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	start_codon	19766337	19766339	.	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19766337	19766538	0.65	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19766337	19766538	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19766539	19766685	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19766686	19766750	1	+	2	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19766686	19766750	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19766751	19766881	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19766882	19766989	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19766882	19766989	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19766990	19767098	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19767099	19767146	0.98	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19767099	19767146	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19767147	19767236	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19767237	19767369	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19767237	19767369	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19767370	19767540	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19767541	19767725	1	+	2	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19767541	19767725	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19767726	19767862	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19767863	19767961	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19767863	19767961	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19767962	19768038	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19768039	19768107	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19768039	19768107	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19768108	19768202	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19768203	19768310	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19768203	19768310	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19768311	19768411	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19768412	19768524	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19768412	19768524	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19768525	19768662	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19768663	19768789	1	+	1	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19768663	19768789	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19768790	19768933	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19768934	19769053	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19768934	19769053	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19769054	19769182	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19769183	19769254	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19769183	19769254	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19769255	19769429	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19769430	19769495	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19769430	19769495	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19769496	19769586	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19769587	19769676	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19769587	19769676	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19769677	19769836	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19769837	19769893	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19769837	19769893	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19769894	19770074	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19770075	19770128	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19770075	19770128	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19770129	19770252	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19770253	19770441	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19770253	19770441	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19770442	19770532	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19770533	19770619	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19770533	19770619	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19770620	19770777	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19770778	19770869	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19770778	19770869	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19770870	19770971	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19770972	19771074	1	+	1	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19770972	19771074	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19771075	19771203	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19771204	19771359	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19771204	19771359	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19771360	19771454	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19771455	19771544	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19771455	19771544	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19771545	19771653	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19771654	19771707	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19771654	19771707	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19771708	19771835	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19771836	19771907	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19771836	19771907	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19771908	19771992	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19771993	19772256	0.99	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19771993	19772256	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19772257	19772429	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19772430	19772519	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19772430	19772519	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19772520	19772677	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19772678	19772743	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19772678	19772743	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19772744	19772823	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19772824	19773009	1	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19772824	19773009	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19773010	19773074	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19773075	19773626	0.98	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19773075	19773626	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	intron	19773627	19773715	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	CDS	19773716	19774306	0.81	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	exon	19773716	19774306	.	+	.	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
Ledus.S1	AUGUSTUS	stop_codon	19774307	19774309	.	+	0	transcript_id "Ledus.S1G220800.t1"; gene_id "Ledus.S1G220800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4681.t1 is derived from g2119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18969344	18975534	.	+	.	Ledus.S1G210200
Ledus.S1	AUGUSTUS	transcript	18969344	18975534	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	start_codon	18969344	18969346	.	+	0	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18969344	18970430	0.99	+	0	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18969344	18970430	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18970431	18970993	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18970994	18971406	1	+	2	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18970994	18971406	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18971407	18971505	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18971506	18973545	0.94	+	0	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18971506	18973545	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18973546	18973697	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18973698	18973871	0.93	+	0	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18973698	18973871	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18973872	18974006	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18974007	18974337	0.82	+	0	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18974007	18974337	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18974338	18974551	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18974552	18974625	1	+	2	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18974552	18974625	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18974626	18974730	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18974731	18974853	1	+	0	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18974731	18974853	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18974854	18975024	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18975025	18975534	1	+	0	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18975025	18975534	.	+	.	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	stop_codon	18975535	18975537	.	+	0	transcript_id "Ledus.S1G210200.t1"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	transcript	18969344	18975534	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	start_codon	18969344	18969346	.	+	0	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18969344	18970516	0.95	+	0	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18969344	18970516	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18970517	18970595	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18970596	18970602	1	+	0	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18970596	18970602	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18970603	18970993	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18970994	18971406	0.98	+	2	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18970994	18971406	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18971407	18971505	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18971506	18973545	0.91	+	0	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18971506	18973545	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18973546	18973697	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18973698	18973871	0.96	+	0	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18973698	18973871	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18973872	18974006	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18974007	18974337	0.67	+	0	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18974007	18974337	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18974338	18974551	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18974552	18974625	1	+	2	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18974552	18974625	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18974626	18974730	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18974731	18974853	1	+	0	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18974731	18974853	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	intron	18974854	18975024	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	CDS	18975025	18975534	1	+	0	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	exon	18975025	18975534	.	+	.	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
Ledus.S1	AUGUSTUS	stop_codon	18975535	18975537	.	+	0	transcript_id "Ledus.S1G210200.t2"; gene_id "Ledus.S1G210200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10646.t1 is derived from g11676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16854972	16855349	.	-	.	Ledus.S3G212300
Ledus.S3	AUGUSTUS	transcript	16854972	16855349	.	-	.	transcript_id "Ledus.S3G212300.t1"; gene_id "Ledus.S3G212300"
Ledus.S3	AUGUSTUS	stop_codon	16854969	16854971	.	-	0	transcript_id "Ledus.S3G212300.t1"; gene_id "Ledus.S3G212300"
Ledus.S3	AUGUSTUS	CDS	16854972	16855349	0.99	-	0	transcript_id "Ledus.S3G212300.t1"; gene_id "Ledus.S3G212300"
Ledus.S3	AUGUSTUS	exon	16854972	16855349	.	-	.	transcript_id "Ledus.S3G212300.t1"; gene_id "Ledus.S3G212300"
Ledus.S3	AUGUSTUS	start_codon	16855347	16855349	.	-	0	transcript_id "Ledus.S3G212300.t1"; gene_id "Ledus.S3G212300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg435.t1 is derived from g7296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2496001	2501872	.	-	.	Ledus.S2G031700
Ledus.S2	AUGUSTUS	transcript	2496001	2501872	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	stop_codon	2495998	2496000	.	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2496001	2496154	0.49	-	1	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2496001	2496154	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2496155	2496251	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2496252	2496376	0.51	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2496252	2496376	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2496377	2496459	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2496460	2496564	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2496460	2496564	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2496565	2496641	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2496642	2496704	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2496642	2496704	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2496705	2496843	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2496844	2496978	0.99	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2496844	2496978	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2496979	2497082	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2497083	2497166	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2497083	2497166	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2497167	2497400	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2497401	2497487	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2497401	2497487	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2497488	2497602	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2497603	2497662	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2497603	2497662	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2497663	2497745	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2497746	2497862	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2497746	2497862	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2497863	2497956	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2497957	2498154	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2497957	2498154	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2498155	2498351	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2498352	2498468	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2498352	2498468	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2498469	2498697	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2498698	2498763	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2498698	2498763	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2498764	2498852	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2498853	2499080	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2498853	2499080	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2499081	2499367	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2499368	2499447	1	-	2	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2499368	2499447	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2499448	2499742	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2499743	2499851	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2499743	2499851	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2499852	2500032	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2500033	2500131	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2500033	2500131	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2500132	2500290	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2500291	2500418	1	-	2	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2500291	2500418	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2500419	2500560	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2500561	2500639	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2500561	2500639	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2500640	2500802	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2500803	2500891	1	-	2	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2500803	2500891	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2500892	2500990	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2500991	2501195	1	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2500991	2501195	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2501196	2501358	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2501359	2501412	0.99	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2501359	2501412	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2501413	2501522	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2501523	2501538	0.6	-	1	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2501523	2501538	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	intron	2501539	2501789	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	CDS	2501790	2501872	0.6	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	exon	2501790	2501872	.	-	.	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
Ledus.S2	AUGUSTUS	start_codon	2501870	2501872	.	-	0	transcript_id "Ledus.S2G031700.t1"; gene_id "Ledus.S2G031700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1740.t1 is derived from g8602.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12287651	12289824	.	-	.	Ledus.S2G162200
Ledus.S2	AUGUSTUS	transcript	12287651	12289824	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	stop_codon	12287648	12287650	.	-	0	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12287651	12287698	0.99	-	0	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12287651	12287698	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12287699	12287789	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12287790	12287909	1	-	0	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12287790	12287909	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12287910	12287980	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12287981	12288034	1	-	0	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12287981	12288034	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12288035	12288151	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12288152	12288215	1	-	1	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12288152	12288215	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12288216	12288392	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12288393	12288430	1	-	0	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12288393	12288430	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12288431	12288667	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12288668	12288726	1	-	2	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12288668	12288726	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12288727	12288849	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12288850	12288889	1	-	0	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12288850	12288889	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12288890	12288988	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12288989	12289064	1	-	1	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12288989	12289064	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12289065	12289175	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12289176	12289441	0.89	-	0	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12289176	12289441	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12289442	12289590	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12289591	12289824	0.39	-	0	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12289591	12289824	.	-	.	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	start_codon	12289822	12289824	.	-	0	transcript_id "Ledus.S2G162200.t1"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	transcript	12287651	12289824	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	stop_codon	12287648	12287650	.	-	0	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12287651	12287698	0.99	-	0	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12287651	12287698	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12287699	12287789	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12287790	12287909	1	-	0	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12287790	12287909	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12287910	12287980	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12287981	12288034	0.99	-	0	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12287981	12288034	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12288035	12288151	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12288152	12288215	1	-	1	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12288152	12288215	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12288216	12288392	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12288393	12288430	1	-	0	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12288393	12288430	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12288431	12288667	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12288668	12288726	1	-	2	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12288668	12288726	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12288727	12288849	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12288850	12288889	1	-	0	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12288850	12288889	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12288890	12288988	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12288989	12289064	1	-	1	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12288989	12289064	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12289065	12289175	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12289176	12289441	0.9	-	0	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12289176	12289441	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	intron	12289442	12289626	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	CDS	12289627	12289824	0.3	-	0	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	exon	12289627	12289824	.	-	.	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
Ledus.S2	AUGUSTUS	start_codon	12289822	12289824	.	-	0	transcript_id "Ledus.S2G162200.t2"; gene_id "Ledus.S2G162200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10792.t1 is derived from g11824.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17770783	17772157	.	+	.	Ledus.S3G226900
Ledus.S3	AUGUSTUS	transcript	17770783	17772157	.	+	.	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	start_codon	17770783	17770785	.	+	0	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	CDS	17770783	17771001	0.41	+	0	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	exon	17770783	17771001	.	+	.	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	intron	17771002	17771099	.	+	.	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	CDS	17771100	17771107	0.96	+	0	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	exon	17771100	17771107	.	+	.	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	intron	17771108	17771241	.	+	.	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	CDS	17771242	17771303	0.96	+	1	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	exon	17771242	17771303	.	+	.	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	intron	17771304	17771654	.	+	.	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	CDS	17771655	17771703	0.98	+	2	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	exon	17771655	17771703	.	+	.	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	intron	17771704	17771931	.	+	.	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	CDS	17771932	17772157	0.86	+	1	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	exon	17771932	17772157	.	+	.	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	stop_codon	17772158	17772160	.	+	0	transcript_id "Ledus.S3G226900.t1"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	transcript	17770973	17772157	.	+	.	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	start_codon	17770973	17770975	.	+	0	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	CDS	17770973	17771001	0.51	+	0	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	exon	17770973	17771001	.	+	.	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	intron	17771002	17771099	.	+	.	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	CDS	17771100	17771338	0.89	+	1	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	exon	17771100	17771338	.	+	.	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	intron	17771339	17771654	.	+	.	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	CDS	17771655	17771703	0.98	+	2	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	exon	17771655	17771703	.	+	.	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	intron	17771704	17771931	.	+	.	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	CDS	17771932	17772157	0.81	+	1	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	exon	17771932	17772157	.	+	.	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
Ledus.S3	AUGUSTUS	stop_codon	17772158	17772160	.	+	0	transcript_id "Ledus.S3G226900.t2"; gene_id "Ledus.S3G226900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2384.t1 is derived from g9247.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17834050	17836357	.	+	.	Ledus.S2G226600
Ledus.S2	AUGUSTUS	transcript	17834050	17836357	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	start_codon	17834050	17834052	.	+	0	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	CDS	17834050	17834069	0.81	+	0	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	exon	17834050	17834069	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	intron	17834070	17834208	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	CDS	17834209	17834299	0.77	+	1	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	exon	17834209	17834299	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	intron	17834300	17834411	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	CDS	17834412	17834594	1	+	0	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	exon	17834412	17834594	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	intron	17834595	17834673	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	CDS	17834674	17834885	1	+	0	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	exon	17834674	17834885	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	intron	17834886	17835062	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	CDS	17835063	17835226	1	+	1	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	exon	17835063	17835226	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	intron	17835227	17835302	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	CDS	17835303	17835461	1	+	2	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	exon	17835303	17835461	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	intron	17835462	17835596	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	CDS	17835597	17835790	0.97	+	2	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	exon	17835597	17835790	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	intron	17835791	17835914	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	CDS	17835915	17836014	0.64	+	0	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	exon	17835915	17836014	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	intron	17836015	17836226	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	CDS	17836227	17836357	0.87	+	2	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	exon	17836227	17836357	.	+	.	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
Ledus.S2	AUGUSTUS	stop_codon	17836358	17836360	.	+	0	transcript_id "Ledus.S2G226600.t1"; gene_id "Ledus.S2G226600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11642.t1 is derived from g5261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5711129	5714755	.	+	.	Ledus.S4G079800
Ledus.S4	AUGUSTUS	transcript	5711129	5714755	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	start_codon	5711129	5711131	.	+	0	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	CDS	5711129	5711143	1	+	0	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	exon	5711129	5711143	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	intron	5711144	5711299	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	CDS	5711300	5711430	1	+	0	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	exon	5711300	5711430	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	intron	5711431	5711569	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	CDS	5711570	5711670	1	+	1	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	exon	5711570	5711670	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	intron	5711671	5712057	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	CDS	5712058	5712230	1	+	2	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	exon	5712058	5712230	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	intron	5712231	5712342	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	CDS	5712343	5712574	1	+	0	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	exon	5712343	5712574	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	intron	5712575	5712705	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	CDS	5712706	5712824	1	+	2	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	exon	5712706	5712824	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	intron	5712825	5713674	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	CDS	5713675	5713731	1	+	0	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	exon	5713675	5713731	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	intron	5713732	5713868	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	CDS	5713869	5714053	1	+	0	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	exon	5713869	5714053	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	intron	5714054	5714151	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	CDS	5714152	5714296	1	+	1	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	exon	5714152	5714296	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	intron	5714297	5714402	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	CDS	5714403	5714486	1	+	0	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	exon	5714403	5714486	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	intron	5714487	5714592	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	CDS	5714593	5714656	0.99	+	0	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	exon	5714593	5714656	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	intron	5714657	5714747	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	CDS	5714748	5714755	1	+	2	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	exon	5714748	5714755	.	+	.	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
Ledus.S4	AUGUSTUS	stop_codon	5714756	5714758	.	+	0	transcript_id "Ledus.S4G079800.t1"; gene_id "Ledus.S4G079800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3516.t1 is derived from g951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9026016	9027723	.	-	.	Ledus.S1G093700
Ledus.S1	AUGUSTUS	transcript	9026016	9027723	.	-	.	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	stop_codon	9026013	9026015	.	-	0	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	CDS	9026016	9026454	1	-	1	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	exon	9026016	9026454	.	-	.	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	intron	9026455	9026541	.	-	.	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	CDS	9026542	9026729	0.97	-	0	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	exon	9026542	9026729	.	-	.	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	intron	9026730	9026810	.	-	.	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	CDS	9026811	9027441	0.28	-	1	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	exon	9026811	9027441	.	-	.	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	intron	9027442	9027536	.	-	.	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	CDS	9027537	9027582	0.32	-	2	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	exon	9027537	9027582	.	-	.	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	intron	9027583	9027668	.	-	.	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	CDS	9027669	9027723	0.77	-	0	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	exon	9027669	9027723	.	-	.	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
Ledus.S1	AUGUSTUS	start_codon	9027721	9027723	.	-	0	transcript_id "Ledus.S1G093700.t1"; gene_id "Ledus.S1G093700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12428.t1 is derived from g6049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11975835	11977164	.	+	.	Ledus.S4G158400
Ledus.S4	AUGUSTUS	transcript	11975835	11977164	.	+	.	transcript_id "Ledus.S4G158400.t1"; gene_id "Ledus.S4G158400"
Ledus.S4	AUGUSTUS	start_codon	11975835	11975837	.	+	0	transcript_id "Ledus.S4G158400.t1"; gene_id "Ledus.S4G158400"
Ledus.S4	AUGUSTUS	CDS	11975835	11976173	1	+	0	transcript_id "Ledus.S4G158400.t1"; gene_id "Ledus.S4G158400"
Ledus.S4	AUGUSTUS	exon	11975835	11976173	.	+	.	transcript_id "Ledus.S4G158400.t1"; gene_id "Ledus.S4G158400"
Ledus.S4	AUGUSTUS	intron	11976174	11976262	.	+	.	transcript_id "Ledus.S4G158400.t1"; gene_id "Ledus.S4G158400"
Ledus.S4	AUGUSTUS	CDS	11976263	11976579	1	+	0	transcript_id "Ledus.S4G158400.t1"; gene_id "Ledus.S4G158400"
Ledus.S4	AUGUSTUS	exon	11976263	11976579	.	+	.	transcript_id "Ledus.S4G158400.t1"; gene_id "Ledus.S4G158400"
Ledus.S4	AUGUSTUS	intron	11976580	11976683	.	+	.	transcript_id "Ledus.S4G158400.t1"; gene_id "Ledus.S4G158400"
Ledus.S4	AUGUSTUS	CDS	11976684	11977164	1	+	1	transcript_id "Ledus.S4G158400.t1"; gene_id "Ledus.S4G158400"
Ledus.S4	AUGUSTUS	exon	11976684	11977164	.	+	.	transcript_id "Ledus.S4G158400.t1"; gene_id "Ledus.S4G158400"
Ledus.S4	AUGUSTUS	stop_codon	11977165	11977167	.	+	0	transcript_id "Ledus.S4G158400.t1"; gene_id "Ledus.S4G158400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3109.t1 is derived from g544.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6008651	6009352	.	-	.	Ledus.S1G053000
Ledus.S1	AUGUSTUS	transcript	6008651	6009352	.	-	.	transcript_id "Ledus.S1G053000.t1"; gene_id "Ledus.S1G053000"
Ledus.S1	AUGUSTUS	stop_codon	6008648	6008650	.	-	0	transcript_id "Ledus.S1G053000.t1"; gene_id "Ledus.S1G053000"
Ledus.S1	AUGUSTUS	CDS	6008651	6009352	0.98	-	0	transcript_id "Ledus.S1G053000.t1"; gene_id "Ledus.S1G053000"
Ledus.S1	AUGUSTUS	exon	6008651	6009352	.	-	.	transcript_id "Ledus.S1G053000.t1"; gene_id "Ledus.S1G053000"
Ledus.S1	AUGUSTUS	start_codon	6009350	6009352	.	-	0	transcript_id "Ledus.S1G053000.t1"; gene_id "Ledus.S1G053000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8905.t1 is derived from g9935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2971668	2972529	.	+	.	Ledus.S3G038200
Ledus.S3	AUGUSTUS	transcript	2971668	2972529	.	+	.	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	start_codon	2971668	2971670	.	+	0	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	CDS	2971668	2971765	1	+	0	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	exon	2971668	2971765	.	+	.	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	intron	2971766	2971855	.	+	.	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	CDS	2971856	2971885	1	+	1	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	exon	2971856	2971885	.	+	.	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	intron	2971886	2971970	.	+	.	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	CDS	2971971	2972072	1	+	1	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	exon	2971971	2972072	.	+	.	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	intron	2972073	2972161	.	+	.	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	CDS	2972162	2972269	1	+	1	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	exon	2972162	2972269	.	+	.	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	intron	2972270	2972345	.	+	.	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	CDS	2972346	2972400	1	+	1	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	exon	2972346	2972400	.	+	.	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	intron	2972401	2972469	.	+	.	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	CDS	2972470	2972529	1	+	0	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	exon	2972470	2972529	.	+	.	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
Ledus.S3	AUGUSTUS	stop_codon	2972530	2972532	.	+	0	transcript_id "Ledus.S3G038200.t1"; gene_id "Ledus.S3G038200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2501.t1 is derived from g9364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18489390	18493008	.	+	.	Ledus.S2G238300
Ledus.S2	AUGUSTUS	transcript	18489390	18493008	.	+	.	transcript_id "Ledus.S2G238300.t1"; gene_id "Ledus.S2G238300"
Ledus.S2	AUGUSTUS	start_codon	18489390	18489392	.	+	0	transcript_id "Ledus.S2G238300.t1"; gene_id "Ledus.S2G238300"
Ledus.S2	AUGUSTUS	CDS	18489390	18491290	0.95	+	0	transcript_id "Ledus.S2G238300.t1"; gene_id "Ledus.S2G238300"
Ledus.S2	AUGUSTUS	exon	18489390	18491290	.	+	.	transcript_id "Ledus.S2G238300.t1"; gene_id "Ledus.S2G238300"
Ledus.S2	AUGUSTUS	intron	18491291	18491372	.	+	.	transcript_id "Ledus.S2G238300.t1"; gene_id "Ledus.S2G238300"
Ledus.S2	AUGUSTUS	CDS	18491373	18493008	1	+	1	transcript_id "Ledus.S2G238300.t1"; gene_id "Ledus.S2G238300"
Ledus.S2	AUGUSTUS	exon	18491373	18493008	.	+	.	transcript_id "Ledus.S2G238300.t1"; gene_id "Ledus.S2G238300"
Ledus.S2	AUGUSTUS	stop_codon	18493009	18493011	.	+	0	transcript_id "Ledus.S2G238300.t1"; gene_id "Ledus.S2G238300"
# This transcript jg7954.t2 is derived from g12625.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7955.t1 is derived from g12626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8114851	8115087	.	-	.	Ledus.S5G073300
Ledus.S5	AUGUSTUS	transcript	8114851	8115087	.	-	.	transcript_id "Ledus.S5G073300.t1"; gene_id "Ledus.S5G073300"
Ledus.S5	AUGUSTUS	stop_codon	8114848	8114850	.	-	0	transcript_id "Ledus.S5G073300.t1"; gene_id "Ledus.S5G073300"
Ledus.S5	AUGUSTUS	CDS	8114851	8115087	0.79	-	0	transcript_id "Ledus.S5G073300.t1"; gene_id "Ledus.S5G073300"
Ledus.S5	AUGUSTUS	exon	8114851	8115087	.	-	.	transcript_id "Ledus.S5G073300.t1"; gene_id "Ledus.S5G073300"
Ledus.S5	AUGUSTUS	start_codon	8115085	8115087	.	-	0	transcript_id "Ledus.S5G073300.t1"; gene_id "Ledus.S5G073300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12036.t1 is derived from g5655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9041862	9044066	.	+	.	Ledus.S4G119200
Ledus.S4	AUGUSTUS	transcript	9041862	9044066	.	+	.	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	start_codon	9041862	9041864	.	+	0	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	CDS	9041862	9042124	0.85	+	0	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	exon	9041862	9042124	.	+	.	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	intron	9042125	9042809	.	+	.	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	CDS	9042810	9042954	1	+	1	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	exon	9042810	9042954	.	+	.	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	intron	9042955	9043032	.	+	.	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	CDS	9043033	9043147	1	+	0	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	exon	9043033	9043147	.	+	.	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	intron	9043148	9043358	.	+	.	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	CDS	9043359	9043422	1	+	2	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	exon	9043359	9043422	.	+	.	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	intron	9043423	9043552	.	+	.	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	CDS	9043553	9043718	0.93	+	1	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	exon	9043553	9043718	.	+	.	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	intron	9043719	9043832	.	+	.	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	CDS	9043833	9044066	0.9	+	0	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	exon	9043833	9044066	.	+	.	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
Ledus.S4	AUGUSTUS	stop_codon	9044067	9044069	.	+	0	transcript_id "Ledus.S4G119200.t1"; gene_id "Ledus.S4G119200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10963.t1 is derived from g4581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	916771	923357	.	-	.	Ledus.S4G011900
Ledus.S4	AUGUSTUS	transcript	916771	923357	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	stop_codon	916768	916770	.	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	916771	916851	0.97	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	916771	916851	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	916852	916952	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	916953	917144	0.63	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	916953	917144	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	917145	917211	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	917212	917394	1	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	917212	917394	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	917395	917519	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	917520	917732	0.61	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	917520	917732	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	917733	917848	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	917849	918010	0.57	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	917849	918010	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	918011	918113	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	918114	918335	0.99	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	918114	918335	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	918336	918437	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	918438	918599	0.99	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	918438	918599	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	918600	918692	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	918693	918836	1	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	918693	918836	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	918837	918936	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	918937	919035	0.94	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	918937	919035	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	919036	919138	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	919139	919256	0.85	-	1	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	919139	919256	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	919257	919426	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	919427	919611	1	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	919427	919611	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	919612	919782	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	919783	919872	1	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	919783	919872	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	919873	919964	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	919965	920008	1	-	2	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	919965	920008	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	920009	920127	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	920128	920215	0.9	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	920128	920215	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	920216	920320	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	920321	920428	0.97	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	920321	920428	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	920429	920596	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	920597	920653	0.99	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	920597	920653	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	920654	920763	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	920764	920832	0.77	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	920764	920832	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	920833	920927	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	920928	920984	1	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	920928	920984	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	920985	921225	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	921226	921295	1	-	1	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	921226	921295	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	921296	921384	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	921385	921604	0.97	-	2	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	921385	921604	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	921605	921823	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	921824	921904	0.98	-	2	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	921824	921904	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	921905	922021	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	922022	922130	0.98	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	922022	922130	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	922131	922219	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	922220	922337	1	-	1	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	922220	922337	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	922338	922497	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	922498	922841	1	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	922498	922841	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	922842	922969	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	922970	923241	0.99	-	2	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	922970	923241	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	intron	923242	923335	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	CDS	923336	923357	1	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	exon	923336	923357	.	-	.	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
Ledus.S4	AUGUSTUS	start_codon	923355	923357	.	-	0	transcript_id "Ledus.S4G011900.t1"; gene_id "Ledus.S4G011900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1362.t1 is derived from g8223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9466419	9467302	.	-	.	Ledus.S2G124400
Ledus.S2	AUGUSTUS	transcript	9466419	9467302	.	-	.	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	stop_codon	9466416	9466418	.	-	0	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	CDS	9466419	9466544	0.98	-	0	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	exon	9466419	9466544	.	-	.	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	intron	9466545	9466628	.	-	.	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	CDS	9466629	9466721	1	-	0	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	exon	9466629	9466721	.	-	.	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	intron	9466722	9466811	.	-	.	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	CDS	9466812	9466922	1	-	0	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	exon	9466812	9466922	.	-	.	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	intron	9466923	9467022	.	-	.	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	CDS	9467023	9467084	1	-	2	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	exon	9467023	9467084	.	-	.	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	intron	9467085	9467178	.	-	.	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	CDS	9467179	9467302	1	-	0	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	exon	9467179	9467302	.	-	.	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
Ledus.S2	AUGUSTUS	start_codon	9467300	9467302	.	-	0	transcript_id "Ledus.S2G124400.t1"; gene_id "Ledus.S2G124400"
# This transcript jg703.t2 is derived from g7564.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg704.t1 is derived from g7565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4331372	4333996	.	+	.	Ledus.S2G058600
Ledus.S2	AUGUSTUS	transcript	4331372	4333996	.	+	.	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	start_codon	4331372	4331374	.	+	0	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4331372	4331534	0.97	+	0	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4331372	4331534	.	+	.	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	intron	4331535	4331615	.	+	.	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4331616	4331708	1	+	2	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4331616	4331708	.	+	.	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	intron	4331709	4331811	.	+	.	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4331812	4331877	1	+	2	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4331812	4331877	.	+	.	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	intron	4331878	4333016	.	+	.	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4333017	4333384	0.82	+	2	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4333017	4333384	.	+	.	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	intron	4333385	4333478	.	+	.	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4333479	4333574	0.81	+	0	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4333479	4333574	.	+	.	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	intron	4333575	4333849	.	+	.	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4333850	4333996	0.59	+	0	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4333850	4333996	.	+	.	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	stop_codon	4333997	4333999	.	+	0	transcript_id "Ledus.S2G058600.t1"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	transcript	4331372	4333996	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	start_codon	4331372	4331374	.	+	0	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4331372	4331534	0.98	+	0	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4331372	4331534	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	intron	4331535	4331615	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4331616	4331708	1	+	2	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4331616	4331708	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	intron	4331709	4331811	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4331812	4331892	0.46	+	2	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4331812	4331892	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	intron	4331893	4332556	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4332557	4332586	0.48	+	2	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4332557	4332586	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	intron	4332587	4333016	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4333017	4333384	0.83	+	2	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4333017	4333384	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	intron	4333385	4333478	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4333479	4333574	0.75	+	0	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4333479	4333574	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	intron	4333575	4333849	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	CDS	4333850	4333996	0.59	+	0	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	exon	4333850	4333996	.	+	.	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
Ledus.S2	AUGUSTUS	stop_codon	4333997	4333999	.	+	0	transcript_id "Ledus.S2G058600.t2"; gene_id "Ledus.S2G058600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2996.t1 is derived from g431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5197532	5201221	.	-	.	Ledus.S1G041700
Ledus.S1	AUGUSTUS	transcript	5197532	5201221	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	stop_codon	5197529	5197531	.	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5197532	5197582	0.99	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5197532	5197582	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5197583	5197726	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5197727	5197781	0.65	-	1	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5197727	5197781	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5197782	5197892	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5197893	5197972	0.64	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5197893	5197972	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5197973	5198099	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5198100	5198233	1	-	2	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5198100	5198233	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5198234	5198423	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5198424	5198531	1	-	2	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5198424	5198531	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5198532	5198629	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5198630	5198699	1	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5198630	5198699	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5198700	5198845	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5198846	5198923	1	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5198846	5198923	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5198924	5199173	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5199174	5199293	1	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5199174	5199293	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5199294	5199464	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5199465	5199524	1	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5199465	5199524	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5199525	5199643	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5199644	5199688	0.98	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5199644	5199688	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5199689	5199968	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5199969	5200046	1	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5199969	5200046	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5200047	5200163	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5200164	5200220	1	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5200164	5200220	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5200221	5200351	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5200352	5200468	1	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5200352	5200468	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5200469	5200674	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5200675	5200836	0.73	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5200675	5200836	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5200837	5200922	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5200923	5200999	0.74	-	2	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5200923	5200999	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	intron	5201000	5201193	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	CDS	5201194	5201221	0.77	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	exon	5201194	5201221	.	-	.	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
Ledus.S1	AUGUSTUS	start_codon	5201219	5201221	.	-	0	transcript_id "Ledus.S1G041700.t1"; gene_id "Ledus.S1G041700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3272.t1 is derived from g707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7199569	7200093	.	+	.	Ledus.S1G069300
Ledus.S1	AUGUSTUS	transcript	7199569	7200093	.	+	.	transcript_id "Ledus.S1G069300.t1"; gene_id "Ledus.S1G069300"
Ledus.S1	AUGUSTUS	start_codon	7199569	7199571	.	+	0	transcript_id "Ledus.S1G069300.t1"; gene_id "Ledus.S1G069300"
Ledus.S1	AUGUSTUS	CDS	7199569	7200093	0.56	+	0	transcript_id "Ledus.S1G069300.t1"; gene_id "Ledus.S1G069300"
Ledus.S1	AUGUSTUS	exon	7199569	7200093	.	+	.	transcript_id "Ledus.S1G069300.t1"; gene_id "Ledus.S1G069300"
Ledus.S1	AUGUSTUS	stop_codon	7200094	7200096	.	+	0	transcript_id "Ledus.S1G069300.t1"; gene_id "Ledus.S1G069300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11697.t1 is derived from g5316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6051031	6053494	.	-	.	Ledus.S4G085300
Ledus.S4	AUGUSTUS	transcript	6051031	6053494	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	stop_codon	6051028	6051030	.	-	0	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	CDS	6051031	6051218	0.32	-	2	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	exon	6051031	6051218	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	intron	6051219	6051521	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	CDS	6051522	6051606	0.53	-	0	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	exon	6051522	6051606	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	intron	6051607	6051847	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	CDS	6051848	6051898	0.59	-	0	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	exon	6051848	6051898	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	intron	6051899	6052023	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	CDS	6052024	6052144	0.74	-	1	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	exon	6052024	6052144	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	intron	6052145	6052253	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	CDS	6052254	6052381	0.87	-	0	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	exon	6052254	6052381	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	intron	6052382	6052473	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	CDS	6052474	6052603	1	-	1	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	exon	6052474	6052603	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	intron	6052604	6052693	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	CDS	6052694	6052777	1	-	1	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	exon	6052694	6052777	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	intron	6052778	6052877	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	CDS	6052878	6053108	1	-	1	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	exon	6052878	6053108	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	intron	6053109	6053246	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	CDS	6053247	6053494	0.77	-	0	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	exon	6053247	6053494	.	-	.	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
Ledus.S4	AUGUSTUS	start_codon	6053492	6053494	.	-	0	transcript_id "Ledus.S4G085300.t1"; gene_id "Ledus.S4G085300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4349.t1 is derived from g1785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16516624	16520271	.	-	.	Ledus.S1G177000
Ledus.S1	AUGUSTUS	transcript	16516624	16520271	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	stop_codon	16516621	16516623	.	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16516624	16516682	0.99	-	2	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16516624	16516682	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16516683	16516782	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16516783	16516834	1	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16516783	16516834	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16516835	16516926	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16516927	16517001	1	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16516927	16517001	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16517002	16517116	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16517117	16517188	1	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16517117	16517188	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16517189	16517304	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16517305	16517364	1	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16517305	16517364	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16517365	16517446	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16517447	16517574	1	-	2	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16517447	16517574	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16517575	16517703	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16517704	16517989	1	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16517704	16517989	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16517990	16518100	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16518101	16518156	1	-	2	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16518101	16518156	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16518157	16518266	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16518267	16518364	0.99	-	1	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16518267	16518364	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16518365	16518512	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16518513	16518550	1	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16518513	16518550	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16518551	16518696	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16518697	16518811	1	-	1	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16518697	16518811	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16518812	16518958	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16518959	16519017	1	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16518959	16519017	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16519018	16519133	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16519134	16519167	1	-	1	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16519134	16519167	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16519168	16519296	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16519297	16519370	1	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16519297	16519370	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16519371	16519498	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16519499	16519582	1	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16519499	16519582	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16519583	16519670	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16519671	16519820	0.72	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16519671	16519820	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16519821	16519950	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16519951	16520013	0.73	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16519951	16520013	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	intron	16520014	16520145	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	CDS	16520146	16520271	0.98	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	exon	16520146	16520271	.	-	.	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
Ledus.S1	AUGUSTUS	start_codon	16520269	16520271	.	-	0	transcript_id "Ledus.S1G177000.t1"; gene_id "Ledus.S1G177000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11091.t1 is derived from g4709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1715028	1715759	.	+	.	Ledus.S4G024700
Ledus.S4	AUGUSTUS	transcript	1715028	1715759	.	+	.	transcript_id "Ledus.S4G024700.t1"; gene_id "Ledus.S4G024700"
Ledus.S4	AUGUSTUS	start_codon	1715028	1715030	.	+	0	transcript_id "Ledus.S4G024700.t1"; gene_id "Ledus.S4G024700"
Ledus.S4	AUGUSTUS	CDS	1715028	1715759	0.99	+	0	transcript_id "Ledus.S4G024700.t1"; gene_id "Ledus.S4G024700"
Ledus.S4	AUGUSTUS	exon	1715028	1715759	.	+	.	transcript_id "Ledus.S4G024700.t1"; gene_id "Ledus.S4G024700"
Ledus.S4	AUGUSTUS	stop_codon	1715760	1715762	.	+	0	transcript_id "Ledus.S4G024700.t1"; gene_id "Ledus.S4G024700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11217.t1 is derived from g4835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2769226	2769620	.	-	.	Ledus.S4G037300
Ledus.S4	AUGUSTUS	transcript	2769226	2769620	.	-	.	transcript_id "Ledus.S4G037300.t1"; gene_id "Ledus.S4G037300"
Ledus.S4	AUGUSTUS	stop_codon	2769223	2769225	.	-	0	transcript_id "Ledus.S4G037300.t1"; gene_id "Ledus.S4G037300"
Ledus.S4	AUGUSTUS	CDS	2769226	2769440	0.84	-	2	transcript_id "Ledus.S4G037300.t1"; gene_id "Ledus.S4G037300"
Ledus.S4	AUGUSTUS	exon	2769226	2769440	.	-	.	transcript_id "Ledus.S4G037300.t1"; gene_id "Ledus.S4G037300"
Ledus.S4	AUGUSTUS	intron	2769441	2769517	.	-	.	transcript_id "Ledus.S4G037300.t1"; gene_id "Ledus.S4G037300"
Ledus.S4	AUGUSTUS	CDS	2769518	2769620	1	-	0	transcript_id "Ledus.S4G037300.t1"; gene_id "Ledus.S4G037300"
Ledus.S4	AUGUSTUS	exon	2769518	2769620	.	-	.	transcript_id "Ledus.S4G037300.t1"; gene_id "Ledus.S4G037300"
Ledus.S4	AUGUSTUS	start_codon	2769618	2769620	.	-	0	transcript_id "Ledus.S4G037300.t1"; gene_id "Ledus.S4G037300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10549.t1 is derived from g11579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16064499	16064948	.	+	.	Ledus.S3G202600
Ledus.S3	AUGUSTUS	transcript	16064499	16064948	.	+	.	transcript_id "Ledus.S3G202600.t1"; gene_id "Ledus.S3G202600"
Ledus.S3	AUGUSTUS	start_codon	16064499	16064501	.	+	0	transcript_id "Ledus.S3G202600.t1"; gene_id "Ledus.S3G202600"
Ledus.S3	AUGUSTUS	CDS	16064499	16064662	0.51	+	0	transcript_id "Ledus.S3G202600.t1"; gene_id "Ledus.S3G202600"
Ledus.S3	AUGUSTUS	exon	16064499	16064662	.	+	.	transcript_id "Ledus.S3G202600.t1"; gene_id "Ledus.S3G202600"
Ledus.S3	AUGUSTUS	intron	16064663	16064764	.	+	.	transcript_id "Ledus.S3G202600.t1"; gene_id "Ledus.S3G202600"
Ledus.S3	AUGUSTUS	CDS	16064765	16064948	0.26	+	1	transcript_id "Ledus.S3G202600.t1"; gene_id "Ledus.S3G202600"
Ledus.S3	AUGUSTUS	exon	16064765	16064948	.	+	.	transcript_id "Ledus.S3G202600.t1"; gene_id "Ledus.S3G202600"
Ledus.S3	AUGUSTUS	stop_codon	16064949	16064951	.	+	0	transcript_id "Ledus.S3G202600.t1"; gene_id "Ledus.S3G202600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7440.t1 is derived from g12111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2697473	2698669	.	-	.	Ledus.S5G021800
Ledus.S5	AUGUSTUS	transcript	2697473	2698669	.	-	.	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	stop_codon	2697470	2697472	.	-	0	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	CDS	2697473	2697746	0.8	-	1	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	exon	2697473	2697746	.	-	.	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	intron	2697747	2697874	.	-	.	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	CDS	2697875	2698080	0.43	-	0	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	exon	2697875	2698080	.	-	.	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	intron	2698081	2698198	.	-	.	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	CDS	2698199	2698452	0.41	-	2	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	exon	2698199	2698452	.	-	.	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	intron	2698453	2698641	.	-	.	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	CDS	2698642	2698669	0.38	-	0	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	exon	2698642	2698669	.	-	.	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
Ledus.S5	AUGUSTUS	start_codon	2698667	2698669	.	-	0	transcript_id "Ledus.S5G021800.t1"; gene_id "Ledus.S5G021800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7885.t1 is derived from g12556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7618122	7618888	.	-	.	Ledus.S5G066300
Ledus.S5	AUGUSTUS	transcript	7618122	7618888	.	-	.	transcript_id "Ledus.S5G066300.t1"; gene_id "Ledus.S5G066300"
Ledus.S5	AUGUSTUS	stop_codon	7618119	7618121	.	-	0	transcript_id "Ledus.S5G066300.t1"; gene_id "Ledus.S5G066300"
Ledus.S5	AUGUSTUS	CDS	7618122	7618283	1	-	0	transcript_id "Ledus.S5G066300.t1"; gene_id "Ledus.S5G066300"
Ledus.S5	AUGUSTUS	exon	7618122	7618283	.	-	.	transcript_id "Ledus.S5G066300.t1"; gene_id "Ledus.S5G066300"
Ledus.S5	AUGUSTUS	intron	7618284	7618404	.	-	.	transcript_id "Ledus.S5G066300.t1"; gene_id "Ledus.S5G066300"
Ledus.S5	AUGUSTUS	CDS	7618405	7618713	1	-	0	transcript_id "Ledus.S5G066300.t1"; gene_id "Ledus.S5G066300"
Ledus.S5	AUGUSTUS	exon	7618405	7618713	.	-	.	transcript_id "Ledus.S5G066300.t1"; gene_id "Ledus.S5G066300"
Ledus.S5	AUGUSTUS	intron	7618714	7618834	.	-	.	transcript_id "Ledus.S5G066300.t1"; gene_id "Ledus.S5G066300"
Ledus.S5	AUGUSTUS	CDS	7618835	7618888	0.99	-	0	transcript_id "Ledus.S5G066300.t1"; gene_id "Ledus.S5G066300"
Ledus.S5	AUGUSTUS	exon	7618835	7618888	.	-	.	transcript_id "Ledus.S5G066300.t1"; gene_id "Ledus.S5G066300"
Ledus.S5	AUGUSTUS	start_codon	7618886	7618888	.	-	0	transcript_id "Ledus.S5G066300.t1"; gene_id "Ledus.S5G066300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7189.t1 is derived from g6720.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2044460	2046829	.	+	.	Ledus.C7G025000
Ledus.C7	AUGUSTUS	transcript	2044460	2046829	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	start_codon	2044460	2044462	.	+	0	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	CDS	2044460	2044848	0.99	+	0	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	exon	2044460	2044848	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	intron	2044849	2044938	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	CDS	2044939	2045008	1	+	1	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	exon	2044939	2045008	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	intron	2045009	2045190	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	CDS	2045191	2045271	0.76	+	0	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	exon	2045191	2045271	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	intron	2045272	2045364	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	CDS	2045365	2045378	0.57	+	0	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	exon	2045365	2045378	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	intron	2045379	2045451	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	CDS	2045452	2045491	0.41	+	1	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	exon	2045452	2045491	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	intron	2045492	2045682	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	CDS	2045683	2045750	0.58	+	0	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	exon	2045683	2045750	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	intron	2045751	2045822	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	CDS	2045823	2045827	0.67	+	1	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	exon	2045823	2045827	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	intron	2045828	2045915	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	CDS	2045916	2046829	0.75	+	2	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	exon	2045916	2046829	.	+	.	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
Ledus.C7	AUGUSTUS	stop_codon	2046830	2046832	.	+	0	transcript_id "Ledus.C7G025000.t1"; gene_id "Ledus.C7G025000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8962.t1 is derived from g9992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3542964	3543546	.	+	.	Ledus.S3G043900
Ledus.S3	AUGUSTUS	transcript	3542964	3543546	.	+	.	transcript_id "Ledus.S3G043900.t1"; gene_id "Ledus.S3G043900"
Ledus.S3	AUGUSTUS	start_codon	3542964	3542966	.	+	0	transcript_id "Ledus.S3G043900.t1"; gene_id "Ledus.S3G043900"
Ledus.S3	AUGUSTUS	CDS	3542964	3543174	0.99	+	0	transcript_id "Ledus.S3G043900.t1"; gene_id "Ledus.S3G043900"
Ledus.S3	AUGUSTUS	exon	3542964	3543174	.	+	.	transcript_id "Ledus.S3G043900.t1"; gene_id "Ledus.S3G043900"
Ledus.S3	AUGUSTUS	intron	3543175	3543283	.	+	.	transcript_id "Ledus.S3G043900.t1"; gene_id "Ledus.S3G043900"
Ledus.S3	AUGUSTUS	CDS	3543284	3543546	1	+	2	transcript_id "Ledus.S3G043900.t1"; gene_id "Ledus.S3G043900"
Ledus.S3	AUGUSTUS	exon	3543284	3543546	.	+	.	transcript_id "Ledus.S3G043900.t1"; gene_id "Ledus.S3G043900"
Ledus.S3	AUGUSTUS	stop_codon	3543547	3543549	.	+	0	transcript_id "Ledus.S3G043900.t1"; gene_id "Ledus.S3G043900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg954.t1 is derived from g7815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6302193	6302477	.	+	.	Ledus.S2G083600
Ledus.S2	AUGUSTUS	transcript	6302193	6302477	.	+	.	transcript_id "Ledus.S2G083600.t1"; gene_id "Ledus.S2G083600"
Ledus.S2	AUGUSTUS	start_codon	6302193	6302195	.	+	0	transcript_id "Ledus.S2G083600.t1"; gene_id "Ledus.S2G083600"
Ledus.S2	AUGUSTUS	CDS	6302193	6302477	0.56	+	0	transcript_id "Ledus.S2G083600.t1"; gene_id "Ledus.S2G083600"
Ledus.S2	AUGUSTUS	exon	6302193	6302477	.	+	.	transcript_id "Ledus.S2G083600.t1"; gene_id "Ledus.S2G083600"
Ledus.S2	AUGUSTUS	stop_codon	6302478	6302480	.	+	0	transcript_id "Ledus.S2G083600.t1"; gene_id "Ledus.S2G083600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg664.t1 is derived from g7525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3983740	3986013	.	-	.	Ledus.S2G054600
Ledus.S2	AUGUSTUS	transcript	3983740	3986013	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	stop_codon	3983737	3983739	.	-	0	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3983740	3983748	0.81	-	0	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3983740	3983748	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3983749	3983833	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3983834	3983912	0.77	-	1	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3983834	3983912	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3983913	3983982	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3983983	3984160	0.66	-	2	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3983983	3984160	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3984161	3984255	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3984256	3984331	0.89	-	0	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3984256	3984331	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3984332	3984411	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3984412	3984516	1	-	0	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3984412	3984516	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3984517	3984605	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3984606	3984783	0.98	-	1	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3984606	3984783	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3984784	3984871	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3984872	3984947	1	-	2	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3984872	3984947	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3984948	3985065	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3985066	3985099	0.95	-	0	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3985066	3985099	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3985100	3985210	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3985211	3985350	0.83	-	2	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3985211	3985350	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3985351	3985450	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3985451	3985637	1	-	0	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3985451	3985637	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3985638	3985725	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3985726	3986013	1	-	0	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3985726	3986013	.	-	.	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	start_codon	3986011	3986013	.	-	0	transcript_id "Ledus.S2G054600.t1"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	transcript	3983740	3986013	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	stop_codon	3983737	3983739	.	-	0	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3983740	3983748	0.82	-	0	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3983740	3983748	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3983749	3983833	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3983834	3983912	0.75	-	1	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3983834	3983912	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3983913	3983982	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3983983	3984160	0.57	-	2	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3983983	3984160	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3984161	3984255	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3984256	3984331	0.78	-	0	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3984256	3984331	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3984332	3984411	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3984412	3984516	1	-	0	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3984412	3984516	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3984517	3984605	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3984606	3984783	1	-	1	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3984606	3984783	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3984784	3984871	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3984872	3984947	1	-	2	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3984872	3984947	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3984948	3985065	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3985066	3985099	0.93	-	0	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3985066	3985099	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3985100	3985210	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3985211	3985347	0.77	-	2	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3985211	3985347	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3985348	3985450	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3985451	3985637	0.96	-	0	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3985451	3985637	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	intron	3985638	3985725	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	CDS	3985726	3986013	1	-	0	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	exon	3985726	3986013	.	-	.	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
Ledus.S2	AUGUSTUS	start_codon	3986011	3986013	.	-	0	transcript_id "Ledus.S2G054600.t2"; gene_id "Ledus.S2G054600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11502.t1 is derived from g5120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4952882	4956872	.	-	.	Ledus.S4G065800
Ledus.S4	AUGUSTUS	transcript	4952882	4956872	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	stop_codon	4952879	4952881	.	-	0	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	CDS	4952882	4953285	0.96	-	2	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	exon	4952882	4953285	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	intron	4953286	4953364	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	CDS	4953365	4953803	1	-	0	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	exon	4953365	4953803	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	intron	4953804	4953911	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	CDS	4953912	4954187	1	-	0	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	exon	4953912	4954187	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	intron	4954188	4954277	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	CDS	4954278	4954404	1	-	1	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	exon	4954278	4954404	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	intron	4954405	4954481	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	CDS	4954482	4954729	1	-	0	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	exon	4954482	4954729	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	intron	4954730	4955444	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	CDS	4955445	4956354	1	-	1	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	exon	4955445	4956354	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	intron	4956355	4956453	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	CDS	4956454	4956872	0.93	-	0	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	exon	4956454	4956872	.	-	.	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
Ledus.S4	AUGUSTUS	start_codon	4956870	4956872	.	-	0	transcript_id "Ledus.S4G065800.t1"; gene_id "Ledus.S4G065800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3751.t1 is derived from g1187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11571023	11572290	.	-	.	Ledus.S1G117200
Ledus.S1	AUGUSTUS	transcript	11571023	11572290	.	-	.	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	stop_codon	11571020	11571022	.	-	0	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	CDS	11571023	11571118	1	-	0	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	exon	11571023	11571118	.	-	.	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	intron	11571119	11571267	.	-	.	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	CDS	11571268	11571630	0.99	-	0	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	exon	11571268	11571630	.	-	.	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	intron	11571631	11571716	.	-	.	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	CDS	11571717	11571892	1	-	2	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	exon	11571717	11571892	.	-	.	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	intron	11571893	11571969	.	-	.	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	CDS	11571970	11572033	1	-	0	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	exon	11571970	11572033	.	-	.	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	intron	11572034	11572146	.	-	.	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	CDS	11572147	11572290	0.83	-	0	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	exon	11572147	11572290	.	-	.	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
Ledus.S1	AUGUSTUS	start_codon	11572288	11572290	.	-	0	transcript_id "Ledus.S1G117200.t1"; gene_id "Ledus.S1G117200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5335.t1 is derived from g2774.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23418579	23423017	.	-	.	Ledus.S1G275600
Ledus.S1	AUGUSTUS	transcript	23418579	23423017	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	stop_codon	23418576	23418578	.	-	0	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23418579	23419296	0.42	-	1	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23418579	23419296	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23419297	23419368	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23419369	23419628	0.44	-	0	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23419369	23419628	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23419629	23419693	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23419694	23420029	0.35	-	0	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23419694	23420029	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23420030	23420184	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23420185	23420492	0.33	-	2	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23420185	23420492	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23420493	23420807	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23420808	23420914	0.52	-	1	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23420808	23420914	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23420915	23421036	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23421037	23421120	0.88	-	1	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23421037	23421120	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23421121	23421226	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23421227	23421311	0.64	-	2	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23421227	23421311	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23421312	23421416	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23421417	23421571	1	-	1	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23421417	23421571	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23421572	23421668	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23421669	23421749	1	-	1	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23421669	23421749	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23421750	23421830	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23421831	23421892	1	-	0	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23421831	23421892	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23421893	23422020	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23422021	23422089	0.99	-	0	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23422021	23422089	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23422090	23422206	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23422207	23422255	1	-	1	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23422207	23422255	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23422256	23422371	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23422372	23422435	0.9	-	2	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23422372	23422435	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23422436	23422565	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23422566	23422615	0.77	-	1	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23422566	23422615	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	intron	23422616	23422778	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	CDS	23422779	23423017	0.98	-	0	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	exon	23422779	23423017	.	-	.	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
Ledus.S1	AUGUSTUS	start_codon	23423015	23423017	.	-	0	transcript_id "Ledus.S1G275600.t1"; gene_id "Ledus.S1G275600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12577.t1 is derived from g6199.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12934590	12934863	.	-	.	Ledus.S4G173300
Ledus.S4	AUGUSTUS	transcript	12934590	12934863	.	-	.	transcript_id "Ledus.S4G173300.t1"; gene_id "Ledus.S4G173300"
Ledus.S4	AUGUSTUS	stop_codon	12934587	12934589	.	-	0	transcript_id "Ledus.S4G173300.t1"; gene_id "Ledus.S4G173300"
Ledus.S4	AUGUSTUS	CDS	12934590	12934663	0.43	-	2	transcript_id "Ledus.S4G173300.t1"; gene_id "Ledus.S4G173300"
Ledus.S4	AUGUSTUS	exon	12934590	12934663	.	-	.	transcript_id "Ledus.S4G173300.t1"; gene_id "Ledus.S4G173300"
Ledus.S4	AUGUSTUS	intron	12934664	12934739	.	-	.	transcript_id "Ledus.S4G173300.t1"; gene_id "Ledus.S4G173300"
Ledus.S4	AUGUSTUS	CDS	12934740	12934863	0.34	-	0	transcript_id "Ledus.S4G173300.t1"; gene_id "Ledus.S4G173300"
Ledus.S4	AUGUSTUS	exon	12934740	12934863	.	-	.	transcript_id "Ledus.S4G173300.t1"; gene_id "Ledus.S4G173300"
Ledus.S4	AUGUSTUS	start_codon	12934861	12934863	.	-	0	transcript_id "Ledus.S4G173300.t1"; gene_id "Ledus.S4G173300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 5 different transcripts
# This transcript jg11028.t1 is derived from g4646.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1287666	1291597	.	-	.	Ledus.S4G018400
Ledus.S4	AUGUSTUS	transcript	1287666	1290554	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	stop_codon	1287663	1287665	.	-	0	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1287666	1287935	1	-	0	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1287666	1287935	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1287936	1288034	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1288035	1288346	1	-	0	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1288035	1288346	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1288347	1288432	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1288433	1288562	1	-	1	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1288433	1288562	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1288563	1288970	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1288971	1289044	1	-	0	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1288971	1289044	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1289045	1289880	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1289881	1290095	1	-	2	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1289881	1290095	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1290096	1290184	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1290185	1290245	1	-	0	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1290185	1290245	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1290246	1290494	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1290495	1290554	0.97	-	0	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1290495	1290554	.	-	.	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	start_codon	1290552	1290554	.	-	0	transcript_id "Ledus.S4G018400.t1"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	transcript	1287666	1290554	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	stop_codon	1287663	1287665	.	-	0	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1287666	1287935	1	-	0	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1287666	1287935	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1287936	1288034	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1288035	1288346	1	-	0	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1288035	1288346	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1288347	1288432	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1288433	1288556	1	-	1	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1288433	1288556	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1288557	1288970	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1288971	1289044	1	-	0	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1288971	1289044	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1289045	1289880	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1289881	1290095	1	-	2	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1289881	1290095	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1290096	1290184	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1290185	1290245	1	-	0	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1290185	1290245	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1290246	1290494	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1290495	1290554	0.95	-	0	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1290495	1290554	.	-	.	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	start_codon	1290552	1290554	.	-	0	transcript_id "Ledus.S4G018400.t2"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	transcript	1290942	1291597	.	-	.	transcript_id "Ledus.S4G018400.t3"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	stop_codon	1290939	1290941	.	-	0	transcript_id "Ledus.S4G018400.t3"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1290942	1290963	0.94	-	1	transcript_id "Ledus.S4G018400.t3"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1290942	1290963	.	-	.	transcript_id "Ledus.S4G018400.t3"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1290964	1291160	.	-	.	transcript_id "Ledus.S4G018400.t3"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1291161	1291262	0.99	-	1	transcript_id "Ledus.S4G018400.t3"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1291161	1291262	.	-	.	transcript_id "Ledus.S4G018400.t3"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1291263	1291499	.	-	.	transcript_id "Ledus.S4G018400.t3"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1291500	1291597	0.85	-	0	transcript_id "Ledus.S4G018400.t3"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1291500	1291597	.	-	.	transcript_id "Ledus.S4G018400.t3"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	start_codon	1291595	1291597	.	-	0	transcript_id "Ledus.S4G018400.t3"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	transcript	1287666	1291597	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	stop_codon	1287663	1287665	.	-	0	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1287666	1287935	0.98	-	0	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1287666	1287935	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1287936	1288034	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1288035	1288346	1	-	0	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1288035	1288346	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1288347	1288432	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1288433	1288562	1	-	1	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1288433	1288562	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1288563	1288970	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1288971	1289044	1	-	0	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1288971	1289044	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1289045	1289880	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1289881	1290095	1	-	2	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1289881	1290095	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1290096	1290184	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1290185	1290245	1	-	0	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1290185	1290245	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1290246	1290494	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1290495	1290593	0.6	-	0	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1290495	1290593	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1290594	1290679	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1290680	1290690	0.57	-	2	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1290680	1290690	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1290691	1290942	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1290943	1290963	0.6	-	2	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1290943	1290963	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1290964	1291191	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1291192	1291262	0.99	-	1	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1291192	1291262	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1291263	1291499	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1291500	1291597	0.85	-	0	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1291500	1291597	.	-	.	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	start_codon	1291595	1291597	.	-	0	transcript_id "Ledus.S4G018400.t4"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	transcript	1287666	1290554	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	stop_codon	1287663	1287665	.	-	0	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1287666	1287935	0.97	-	0	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1287666	1287935	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1287936	1288034	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1288035	1288346	1	-	0	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1288035	1288346	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1288347	1288432	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1288433	1288562	1	-	1	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1288433	1288562	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1288563	1288970	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1288971	1289044	1	-	0	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1288971	1289044	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1289045	1289880	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1289881	1290083	0.38	-	2	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1289881	1290083	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1290084	1290184	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1290185	1290245	0.48	-	0	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1290185	1290245	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	intron	1290246	1290494	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	CDS	1290495	1290554	0.49	-	0	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	exon	1290495	1290554	.	-	.	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
Ledus.S4	AUGUSTUS	start_codon	1290552	1290554	.	-	0	transcript_id "Ledus.S4G018400.t5"; gene_id "Ledus.S4G018400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg711.t1 is derived from g7572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4346141	4348533	.	-	.	Ledus.S2G059300
Ledus.S2	AUGUSTUS	transcript	4346141	4348533	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	stop_codon	4346138	4346140	.	-	0	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	CDS	4346141	4346252	0.7	-	1	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	exon	4346141	4346252	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	intron	4346253	4346343	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	CDS	4346344	4346609	0.99	-	0	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	exon	4346344	4346609	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	intron	4346610	4346801	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	CDS	4346802	4346877	1	-	1	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	exon	4346802	4346877	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	intron	4346878	4347042	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	CDS	4347043	4347128	1	-	0	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	exon	4347043	4347128	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	intron	4347129	4347442	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	CDS	4347443	4347505	1	-	0	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	exon	4347443	4347505	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	intron	4347506	4347686	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	CDS	4347687	4347839	1	-	0	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	exon	4347687	4347839	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	intron	4347840	4348392	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	CDS	4348393	4348533	0.95	-	0	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	exon	4348393	4348533	.	-	.	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
Ledus.S2	AUGUSTUS	start_codon	4348531	4348533	.	-	0	transcript_id "Ledus.S2G059300.t1"; gene_id "Ledus.S2G059300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12280.t1 is derived from g5900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10827682	10828971	.	-	.	Ledus.S4G143600
Ledus.S4	AUGUSTUS	transcript	10827682	10828971	.	-	.	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	stop_codon	10827679	10827681	.	-	0	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	CDS	10827682	10827807	1	-	0	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	exon	10827682	10827807	.	-	.	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	intron	10827808	10827898	.	-	.	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	CDS	10827899	10827958	1	-	0	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	exon	10827899	10827958	.	-	.	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	intron	10827959	10828042	.	-	.	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	CDS	10828043	10828096	1	-	0	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	exon	10828043	10828096	.	-	.	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	intron	10828097	10828343	.	-	.	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	CDS	10828344	10828411	1	-	2	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	exon	10828344	10828411	.	-	.	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	intron	10828412	10828586	.	-	.	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	CDS	10828587	10828730	1	-	2	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	exon	10828587	10828730	.	-	.	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	intron	10828731	10828859	.	-	.	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	CDS	10828860	10828971	0.96	-	0	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	exon	10828860	10828971	.	-	.	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
Ledus.S4	AUGUSTUS	start_codon	10828969	10828971	.	-	0	transcript_id "Ledus.S4G143600.t1"; gene_id "Ledus.S4G143600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7996.t1 is derived from g12667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8396835	8402594	.	-	.	Ledus.S5G077400
Ledus.S5	AUGUSTUS	transcript	8396835	8402594	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	stop_codon	8396832	8396834	.	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8396835	8396921	0.7	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8396835	8396921	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8396922	8397047	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8397048	8397119	0.99	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8397048	8397119	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8397120	8397344	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8397345	8398070	0.94	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8397345	8398070	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8398071	8398254	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8398255	8398308	1	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8398255	8398308	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8398309	8398517	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8398518	8398677	1	-	1	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8398518	8398677	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8398678	8398874	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8398875	8398938	1	-	2	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8398875	8398938	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8398939	8399064	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8399065	8399335	0.99	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8399065	8399335	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8399336	8399501	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8399502	8399777	0.71	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8399502	8399777	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8399778	8399995	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8399996	8400056	0.94	-	1	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8399996	8400056	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8400057	8400225	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8400226	8400335	1	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8400226	8400335	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8400336	8400461	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8400462	8400665	1	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8400462	8400665	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8400666	8400782	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8400783	8400918	0.99	-	1	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8400783	8400918	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8400919	8400996	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8400997	8401122	1	-	1	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8400997	8401122	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8401123	8401235	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8401236	8401342	1	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8401236	8401342	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8401343	8401492	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8401493	8401569	1	-	2	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8401493	8401569	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8401570	8401651	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8401652	8401796	1	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8401652	8401796	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8401797	8401895	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8401896	8401938	1	-	1	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8401896	8401938	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8401939	8402105	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8402106	8402140	1	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8402106	8402140	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8402141	8402236	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8402237	8402315	0.92	-	1	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8402237	8402315	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	intron	8402316	8402562	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	CDS	8402563	8402594	0.49	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	exon	8402563	8402594	.	-	.	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
Ledus.S5	AUGUSTUS	start_codon	8402592	8402594	.	-	0	transcript_id "Ledus.S5G077400.t1"; gene_id "Ledus.S5G077400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7385.t1 is derived from g12056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1955276	1955683	.	-	.	Ledus.S5G016300
Ledus.S5	AUGUSTUS	transcript	1955276	1955683	.	-	.	transcript_id "Ledus.S5G016300.t1"; gene_id "Ledus.S5G016300"
Ledus.S5	AUGUSTUS	stop_codon	1955273	1955275	.	-	0	transcript_id "Ledus.S5G016300.t1"; gene_id "Ledus.S5G016300"
Ledus.S5	AUGUSTUS	CDS	1955276	1955683	0.93	-	0	transcript_id "Ledus.S5G016300.t1"; gene_id "Ledus.S5G016300"
Ledus.S5	AUGUSTUS	exon	1955276	1955683	.	-	.	transcript_id "Ledus.S5G016300.t1"; gene_id "Ledus.S5G016300"
Ledus.S5	AUGUSTUS	start_codon	1955681	1955683	.	-	0	transcript_id "Ledus.S5G016300.t1"; gene_id "Ledus.S5G016300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7694.t1 is derived from g12365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5228933	5230007	.	-	.	Ledus.S5G047200
Ledus.S5	AUGUSTUS	transcript	5228933	5230007	.	-	.	transcript_id "Ledus.S5G047200.t1"; gene_id "Ledus.S5G047200"
Ledus.S5	AUGUSTUS	stop_codon	5228930	5228932	.	-	0	transcript_id "Ledus.S5G047200.t1"; gene_id "Ledus.S5G047200"
Ledus.S5	AUGUSTUS	CDS	5228933	5229741	0.89	-	2	transcript_id "Ledus.S5G047200.t1"; gene_id "Ledus.S5G047200"
Ledus.S5	AUGUSTUS	exon	5228933	5229741	.	-	.	transcript_id "Ledus.S5G047200.t1"; gene_id "Ledus.S5G047200"
Ledus.S5	AUGUSTUS	intron	5229742	5229937	.	-	.	transcript_id "Ledus.S5G047200.t1"; gene_id "Ledus.S5G047200"
Ledus.S5	AUGUSTUS	CDS	5229938	5230007	0.98	-	0	transcript_id "Ledus.S5G047200.t1"; gene_id "Ledus.S5G047200"
Ledus.S5	AUGUSTUS	exon	5229938	5230007	.	-	.	transcript_id "Ledus.S5G047200.t1"; gene_id "Ledus.S5G047200"
Ledus.S5	AUGUSTUS	start_codon	5230005	5230007	.	-	0	transcript_id "Ledus.S5G047200.t1"; gene_id "Ledus.S5G047200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3086.t1 is derived from g521.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5799040	5799710	.	-	.	Ledus.S1G050700
Ledus.S1	AUGUSTUS	transcript	5799040	5799710	.	-	.	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	stop_codon	5799037	5799039	.	-	0	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	CDS	5799040	5799252	1	-	0	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	exon	5799040	5799252	.	-	.	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	intron	5799253	5799334	.	-	.	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	CDS	5799335	5799397	1	-	0	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	exon	5799335	5799397	.	-	.	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	intron	5799398	5799507	.	-	.	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	CDS	5799508	5799580	0.97	-	1	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	exon	5799508	5799580	.	-	.	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	intron	5799581	5799666	.	-	.	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	CDS	5799667	5799710	1	-	0	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	exon	5799667	5799710	.	-	.	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
Ledus.S1	AUGUSTUS	start_codon	5799708	5799710	.	-	0	transcript_id "Ledus.S1G050700.t1"; gene_id "Ledus.S1G050700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6611.t1 is derived from g4054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32644239	32645462	.	-	.	Ledus.S1G403200
Ledus.S1	AUGUSTUS	transcript	32644239	32645462	.	-	.	transcript_id "Ledus.S1G403200.t1"; gene_id "Ledus.S1G403200"
Ledus.S1	AUGUSTUS	stop_codon	32644236	32644238	.	-	0	transcript_id "Ledus.S1G403200.t1"; gene_id "Ledus.S1G403200"
Ledus.S1	AUGUSTUS	CDS	32644239	32645462	0.69	-	0	transcript_id "Ledus.S1G403200.t1"; gene_id "Ledus.S1G403200"
Ledus.S1	AUGUSTUS	exon	32644239	32645462	.	-	.	transcript_id "Ledus.S1G403200.t1"; gene_id "Ledus.S1G403200"
Ledus.S1	AUGUSTUS	start_codon	32645460	32645462	.	-	0	transcript_id "Ledus.S1G403200.t1"; gene_id "Ledus.S1G403200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8908.t1 is derived from g9938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2983520	2987347	.	+	.	Ledus.S3G038500
Ledus.S3	AUGUSTUS	transcript	2983520	2987347	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	start_codon	2983520	2983522	.	+	0	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2983520	2983529	1	+	0	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2983520	2983529	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2983530	2983719	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2983720	2984038	1	+	2	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2983720	2984038	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2984039	2984248	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2984249	2984287	0.99	+	1	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2984249	2984287	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2984288	2984402	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2984403	2984429	0.99	+	1	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2984403	2984429	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2984430	2984521	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2984522	2984603	1	+	1	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2984522	2984603	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2984604	2984961	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2984962	2985030	0.47	+	0	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2984962	2985030	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2985031	2985129	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2985130	2985331	0.72	+	0	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2985130	2985331	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2985332	2985421	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2985422	2985552	1	+	2	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2985422	2985552	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2985553	2985623	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2985624	2985679	1	+	0	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2985624	2985679	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2985680	2985774	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2985775	2985854	1	+	1	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2985775	2985854	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2985855	2985935	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2985936	2986018	1	+	2	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2985936	2986018	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2986019	2986087	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2986088	2986165	1	+	0	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2986088	2986165	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2986166	2986283	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2986284	2986352	1	+	0	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2986284	2986352	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2986353	2986436	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2986437	2986505	1	+	0	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2986437	2986505	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2986506	2986585	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2986586	2986632	1	+	0	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2986586	2986632	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2986633	2986754	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2986755	2986845	0.97	+	1	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2986755	2986845	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2986846	2986997	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2986998	2987112	0.94	+	0	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2986998	2987112	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	intron	2987113	2987309	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	CDS	2987310	2987347	1	+	2	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	exon	2987310	2987347	.	+	.	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
Ledus.S3	AUGUSTUS	stop_codon	2987348	2987350	.	+	0	transcript_id "Ledus.S3G038500.t1"; gene_id "Ledus.S3G038500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8454.t1 is derived from g13126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11780849	11782528	.	+	.	Ledus.S5G123200
Ledus.S5	AUGUSTUS	transcript	11780849	11782528	.	+	.	transcript_id "Ledus.S5G123200.t1"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	start_codon	11780849	11780851	.	+	0	transcript_id "Ledus.S5G123200.t1"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	CDS	11780849	11782528	1	+	0	transcript_id "Ledus.S5G123200.t1"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	exon	11780849	11782528	.	+	.	transcript_id "Ledus.S5G123200.t1"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	stop_codon	11782529	11782531	.	+	0	transcript_id "Ledus.S5G123200.t1"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	transcript	11781548	11782528	.	+	.	transcript_id "Ledus.S5G123200.t2"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	start_codon	11781548	11781550	.	+	0	transcript_id "Ledus.S5G123200.t2"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	CDS	11781548	11782528	0.76	+	0	transcript_id "Ledus.S5G123200.t2"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	exon	11781548	11782528	.	+	.	transcript_id "Ledus.S5G123200.t2"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	stop_codon	11782529	11782531	.	+	0	transcript_id "Ledus.S5G123200.t2"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	transcript	11782070	11782528	.	+	.	transcript_id "Ledus.S5G123200.t3"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	start_codon	11782070	11782072	.	+	0	transcript_id "Ledus.S5G123200.t3"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	CDS	11782070	11782528	0.68	+	0	transcript_id "Ledus.S5G123200.t3"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	exon	11782070	11782528	.	+	.	transcript_id "Ledus.S5G123200.t3"; gene_id "Ledus.S5G123200"
Ledus.S5	AUGUSTUS	stop_codon	11782529	11782531	.	+	0	transcript_id "Ledus.S5G123200.t3"; gene_id "Ledus.S5G123200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6245.t1 is derived from g3688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29876649	29877199	.	-	.	Ledus.S1G366600
Ledus.S1	AUGUSTUS	transcript	29876649	29877199	.	-	.	transcript_id "Ledus.S1G366600.t1"; gene_id "Ledus.S1G366600"
Ledus.S1	AUGUSTUS	stop_codon	29876646	29876648	.	-	0	transcript_id "Ledus.S1G366600.t1"; gene_id "Ledus.S1G366600"
Ledus.S1	AUGUSTUS	CDS	29876649	29876745	0.44	-	1	transcript_id "Ledus.S1G366600.t1"; gene_id "Ledus.S1G366600"
Ledus.S1	AUGUSTUS	exon	29876649	29876745	.	-	.	transcript_id "Ledus.S1G366600.t1"; gene_id "Ledus.S1G366600"
Ledus.S1	AUGUSTUS	intron	29876746	29877041	.	-	.	transcript_id "Ledus.S1G366600.t1"; gene_id "Ledus.S1G366600"
Ledus.S1	AUGUSTUS	CDS	29877042	29877199	0.68	-	0	transcript_id "Ledus.S1G366600.t1"; gene_id "Ledus.S1G366600"
Ledus.S1	AUGUSTUS	exon	29877042	29877199	.	-	.	transcript_id "Ledus.S1G366600.t1"; gene_id "Ledus.S1G366600"
Ledus.S1	AUGUSTUS	start_codon	29877197	29877199	.	-	0	transcript_id "Ledus.S1G366600.t1"; gene_id "Ledus.S1G366600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4749.t1 is derived from g2187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19593996	19596142	.	-	.	Ledus.S1G217000
Ledus.S1	AUGUSTUS	transcript	19593996	19596142	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	stop_codon	19593993	19593995	.	-	0	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19593996	19594224	1	-	1	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19593996	19594224	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19594225	19594311	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19594312	19594387	1	-	2	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19594312	19594387	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19594388	19594478	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19594479	19594561	1	-	1	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19594479	19594561	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19594562	19594669	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19594670	19594776	1	-	0	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19594670	19594776	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19594777	19594860	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19594861	19594920	1	-	0	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19594861	19594920	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19594921	19595078	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19595079	19595180	1	-	0	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19595079	19595180	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19595181	19595346	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19595347	19595445	1	-	0	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19595347	19595445	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19595446	19595561	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19595562	19595826	1	-	1	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19595562	19595826	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19595827	19596137	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19596138	19596142	1	-	0	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19596138	19596142	.	-	.	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	start_codon	19596140	19596142	.	-	0	transcript_id "Ledus.S1G217000.t1"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	transcript	19593996	19595944	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	stop_codon	19593993	19593995	.	-	0	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19593996	19594224	0.98	-	1	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19593996	19594224	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19594225	19594311	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19594312	19594387	1	-	2	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19594312	19594387	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19594388	19594478	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19594479	19594561	0.99	-	1	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19594479	19594561	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19594562	19594669	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19594670	19594776	0.99	-	0	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19594670	19594776	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19594777	19594860	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19594861	19594920	1	-	0	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19594861	19594920	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19594921	19595078	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19595079	19595180	1	-	0	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19595079	19595180	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19595181	19595346	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19595347	19595445	1	-	0	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19595347	19595445	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19595446	19595561	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19595562	19595650	0.2	-	2	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19595562	19595650	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19595651	19595801	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19595802	19595806	0.2	-	1	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19595802	19595806	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	intron	19595807	19595888	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	CDS	19595889	19595944	0.5	-	0	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	exon	19595889	19595944	.	-	.	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
Ledus.S1	AUGUSTUS	start_codon	19595942	19595944	.	-	0	transcript_id "Ledus.S1G217000.t2"; gene_id "Ledus.S1G217000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3578.t1 is derived from g1014.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9772374	9773339	.	+	.	Ledus.S1G099900
Ledus.S1	AUGUSTUS	transcript	9772374	9773339	.	+	.	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	start_codon	9772374	9772376	.	+	0	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	CDS	9772374	9772575	0.25	+	0	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	exon	9772374	9772575	.	+	.	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	intron	9772576	9772695	.	+	.	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	CDS	9772696	9772775	0.33	+	2	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	exon	9772696	9772775	.	+	.	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	intron	9772776	9772898	.	+	.	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	CDS	9772899	9772922	0.74	+	0	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	exon	9772899	9772922	.	+	.	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	intron	9772923	9773018	.	+	.	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	CDS	9773019	9773339	0.6	+	0	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	exon	9773019	9773339	.	+	.	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	stop_codon	9773340	9773342	.	+	0	transcript_id "Ledus.S1G099900.t1"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	transcript	9772374	9773085	.	+	.	transcript_id "Ledus.S1G099900.t2"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	start_codon	9772374	9772376	.	+	0	transcript_id "Ledus.S1G099900.t2"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	CDS	9772374	9772498	0.22	+	0	transcript_id "Ledus.S1G099900.t2"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	exon	9772374	9772498	.	+	.	transcript_id "Ledus.S1G099900.t2"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	intron	9772499	9772826	.	+	.	transcript_id "Ledus.S1G099900.t2"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	CDS	9772827	9772922	0.38	+	1	transcript_id "Ledus.S1G099900.t2"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	exon	9772827	9772922	.	+	.	transcript_id "Ledus.S1G099900.t2"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	intron	9772923	9772988	.	+	.	transcript_id "Ledus.S1G099900.t2"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	CDS	9772989	9773085	0.38	+	1	transcript_id "Ledus.S1G099900.t2"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	exon	9772989	9773085	.	+	.	transcript_id "Ledus.S1G099900.t2"; gene_id "Ledus.S1G099900"
Ledus.S1	AUGUSTUS	stop_codon	9773086	9773088	.	+	0	transcript_id "Ledus.S1G099900.t2"; gene_id "Ledus.S1G099900"
# This transcript jg4765.t2 is derived from g2203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4766.t1 is derived from g2204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19662448	19663336	.	-	.	Ledus.S1G218700
Ledus.S1	AUGUSTUS	transcript	19662448	19663336	.	-	.	transcript_id "Ledus.S1G218700.t1"; gene_id "Ledus.S1G218700"
Ledus.S1	AUGUSTUS	stop_codon	19662445	19662447	.	-	0	transcript_id "Ledus.S1G218700.t1"; gene_id "Ledus.S1G218700"
Ledus.S1	AUGUSTUS	CDS	19662448	19662510	0.84	-	0	transcript_id "Ledus.S1G218700.t1"; gene_id "Ledus.S1G218700"
Ledus.S1	AUGUSTUS	exon	19662448	19662510	.	-	.	transcript_id "Ledus.S1G218700.t1"; gene_id "Ledus.S1G218700"
Ledus.S1	AUGUSTUS	intron	19662511	19662580	.	-	.	transcript_id "Ledus.S1G218700.t1"; gene_id "Ledus.S1G218700"
Ledus.S1	AUGUSTUS	CDS	19662581	19663336	1	-	0	transcript_id "Ledus.S1G218700.t1"; gene_id "Ledus.S1G218700"
Ledus.S1	AUGUSTUS	exon	19662581	19663336	.	-	.	transcript_id "Ledus.S1G218700.t1"; gene_id "Ledus.S1G218700"
Ledus.S1	AUGUSTUS	start_codon	19663334	19663336	.	-	0	transcript_id "Ledus.S1G218700.t1"; gene_id "Ledus.S1G218700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3084.t1 is derived from g519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5794630	5796424	.	+	.	Ledus.S1G050500
Ledus.S1	AUGUSTUS	transcript	5794630	5796424	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	start_codon	5794630	5794632	.	+	0	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5794630	5794721	0.99	+	0	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5794630	5794721	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5794722	5794799	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5794800	5794947	1	+	1	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5794800	5794947	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5794948	5795028	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5795029	5795114	1	+	0	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5795029	5795114	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5795115	5795254	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5795255	5795367	1	+	1	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5795255	5795367	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5795368	5795480	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5795481	5795546	0.94	+	2	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5795481	5795546	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5795547	5795633	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5795634	5795770	0.5	+	2	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5795634	5795770	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5795771	5795896	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5795897	5795962	1	+	0	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5795897	5795962	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5795963	5796061	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5796062	5796424	1	+	0	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5796062	5796424	.	+	.	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	stop_codon	5796425	5796427	.	+	0	transcript_id "Ledus.S1G050500.t1"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	transcript	5794630	5796424	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	start_codon	5794630	5794632	.	+	0	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5794630	5794721	1	+	0	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5794630	5794721	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5794722	5794793	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5794794	5794947	1	+	1	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5794794	5794947	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5794948	5795028	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5795029	5795114	1	+	0	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5795029	5795114	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5795115	5795254	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5795255	5795367	1	+	1	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5795255	5795367	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5795368	5795480	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5795481	5795546	0.93	+	2	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5795481	5795546	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5795547	5795633	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5795634	5795770	0.43	+	2	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5795634	5795770	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5795771	5795896	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5795897	5795962	1	+	0	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5795897	5795962	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	intron	5795963	5796061	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	CDS	5796062	5796424	1	+	0	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	exon	5796062	5796424	.	+	.	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
Ledus.S1	AUGUSTUS	stop_codon	5796425	5796427	.	+	0	transcript_id "Ledus.S1G050500.t2"; gene_id "Ledus.S1G050500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8146.t1 is derived from g12817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9368507	9369764	.	+	.	Ledus.S5G092400
Ledus.S5	AUGUSTUS	transcript	9368507	9369764	.	+	.	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	start_codon	9368507	9368509	.	+	0	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	CDS	9368507	9368743	0.86	+	0	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	exon	9368507	9368743	.	+	.	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	intron	9368744	9368826	.	+	.	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	CDS	9368827	9369018	1	+	0	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	exon	9368827	9369018	.	+	.	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	intron	9369019	9369104	.	+	.	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	CDS	9369105	9369270	1	+	0	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	exon	9369105	9369270	.	+	.	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	intron	9369271	9369363	.	+	.	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	CDS	9369364	9369764	0.99	+	2	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	exon	9369364	9369764	.	+	.	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
Ledus.S5	AUGUSTUS	stop_codon	9369765	9369767	.	+	0	transcript_id "Ledus.S5G092400.t1"; gene_id "Ledus.S5G092400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10209.t1 is derived from g11239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13609931	13611283	.	+	.	Ledus.S3G168600
Ledus.S3	AUGUSTUS	transcript	13609931	13611283	.	+	.	transcript_id "Ledus.S3G168600.t1"; gene_id "Ledus.S3G168600"
Ledus.S3	AUGUSTUS	start_codon	13609931	13609933	.	+	0	transcript_id "Ledus.S3G168600.t1"; gene_id "Ledus.S3G168600"
Ledus.S3	AUGUSTUS	CDS	13609931	13611283	0.95	+	0	transcript_id "Ledus.S3G168600.t1"; gene_id "Ledus.S3G168600"
Ledus.S3	AUGUSTUS	exon	13609931	13611283	.	+	.	transcript_id "Ledus.S3G168600.t1"; gene_id "Ledus.S3G168600"
Ledus.S3	AUGUSTUS	stop_codon	13611284	13611286	.	+	0	transcript_id "Ledus.S3G168600.t1"; gene_id "Ledus.S3G168600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5051.t1 is derived from g2490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21316877	21320844	.	-	.	Ledus.S1G247200
Ledus.S1	AUGUSTUS	transcript	21316877	21320844	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	stop_codon	21316874	21316876	.	-	0	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21316877	21316983	0.98	-	2	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21316877	21316983	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21316984	21317086	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21317087	21317165	1	-	0	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21317087	21317165	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21317166	21317246	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21317247	21317552	1	-	0	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21317247	21317552	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21317553	21317651	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21317652	21317811	1	-	1	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21317652	21317811	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21317812	21317902	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21317903	21318076	1	-	1	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21317903	21318076	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21318077	21318197	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21318198	21318313	1	-	0	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21318198	21318313	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21318314	21318412	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21318413	21318508	1	-	0	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21318413	21318508	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21318509	21318610	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21318611	21318997	0.98	-	0	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21318611	21318997	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21318998	21319074	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21319075	21319482	1	-	0	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21319075	21319482	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21319483	21319553	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21319554	21319667	1	-	0	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21319554	21319667	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21319668	21319754	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21319755	21319803	1	-	1	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21319755	21319803	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21319804	21319902	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21319903	21320062	1	-	2	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21319903	21320062	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21320063	21320156	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21320157	21320844	0.48	-	0	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21320157	21320844	.	-	.	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	start_codon	21320842	21320844	.	-	0	transcript_id "Ledus.S1G247200.t1"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	transcript	21316877	21320844	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	stop_codon	21316874	21316876	.	-	0	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21316877	21316983	0.95	-	2	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21316877	21316983	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21316984	21317086	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21317087	21317165	0.99	-	0	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21317087	21317165	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21317166	21317246	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21317247	21317552	1	-	0	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21317247	21317552	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21317553	21317651	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21317652	21317811	1	-	1	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21317652	21317811	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21317812	21317902	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21317903	21318076	1	-	1	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21317903	21318076	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21318077	21318197	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21318198	21318313	1	-	0	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21318198	21318313	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21318314	21318412	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21318413	21318508	0.98	-	0	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21318413	21318508	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21318509	21318610	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21318611	21318997	0.95	-	0	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21318611	21318997	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21318998	21319158	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21319159	21319482	0.95	-	0	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21319159	21319482	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21319483	21319553	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21319554	21319667	1	-	0	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21319554	21319667	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21319668	21319754	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21319755	21319803	1	-	1	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21319755	21319803	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21319804	21319902	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21319903	21320062	1	-	2	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21319903	21320062	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	intron	21320063	21320156	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	CDS	21320157	21320844	0.38	-	0	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	exon	21320157	21320844	.	-	.	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
Ledus.S1	AUGUSTUS	start_codon	21320842	21320844	.	-	0	transcript_id "Ledus.S1G247200.t2"; gene_id "Ledus.S1G247200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6722.t1 is derived from g4165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33531958	33533853	.	-	.	Ledus.S1G414300
Ledus.S1	AUGUSTUS	transcript	33531958	33533853	.	-	.	transcript_id "Ledus.S1G414300.t1"; gene_id "Ledus.S1G414300"
Ledus.S1	AUGUSTUS	stop_codon	33531955	33531957	.	-	0	transcript_id "Ledus.S1G414300.t1"; gene_id "Ledus.S1G414300"
Ledus.S1	AUGUSTUS	CDS	33531958	33533853	0.57	-	0	transcript_id "Ledus.S1G414300.t1"; gene_id "Ledus.S1G414300"
Ledus.S1	AUGUSTUS	exon	33531958	33533853	.	-	.	transcript_id "Ledus.S1G414300.t1"; gene_id "Ledus.S1G414300"
Ledus.S1	AUGUSTUS	start_codon	33533851	33533853	.	-	0	transcript_id "Ledus.S1G414300.t1"; gene_id "Ledus.S1G414300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11511.t1 is derived from g5129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5001736	5002955	.	-	.	Ledus.S4G066700
Ledus.S4	AUGUSTUS	transcript	5001736	5002955	.	-	.	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	stop_codon	5001733	5001735	.	-	0	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	CDS	5001736	5002213	1	-	1	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	exon	5001736	5002213	.	-	.	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	intron	5002214	5002293	.	-	.	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	CDS	5002294	5002426	1	-	2	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	exon	5002294	5002426	.	-	.	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	intron	5002427	5002519	.	-	.	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	CDS	5002520	5002556	1	-	0	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	exon	5002520	5002556	.	-	.	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	intron	5002557	5002639	.	-	.	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	CDS	5002640	5002748	1	-	1	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	exon	5002640	5002748	.	-	.	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	intron	5002749	5002821	.	-	.	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	CDS	5002822	5002955	0.98	-	0	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	exon	5002822	5002955	.	-	.	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
Ledus.S4	AUGUSTUS	start_codon	5002953	5002955	.	-	0	transcript_id "Ledus.S4G066700.t1"; gene_id "Ledus.S4G066700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12368.t1 is derived from g5989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11463703	11464590	.	-	.	Ledus.S4G152400
Ledus.S4	AUGUSTUS	transcript	11463703	11464590	.	-	.	transcript_id "Ledus.S4G152400.t1"; gene_id "Ledus.S4G152400"
Ledus.S4	AUGUSTUS	stop_codon	11463700	11463702	.	-	0	transcript_id "Ledus.S4G152400.t1"; gene_id "Ledus.S4G152400"
Ledus.S4	AUGUSTUS	CDS	11463703	11464590	0.81	-	0	transcript_id "Ledus.S4G152400.t1"; gene_id "Ledus.S4G152400"
Ledus.S4	AUGUSTUS	exon	11463703	11464590	.	-	.	transcript_id "Ledus.S4G152400.t1"; gene_id "Ledus.S4G152400"
Ledus.S4	AUGUSTUS	start_codon	11464588	11464590	.	-	0	transcript_id "Ledus.S4G152400.t1"; gene_id "Ledus.S4G152400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3623.t1 is derived from g1059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10248090	10248879	.	+	.	Ledus.S1G104400
Ledus.S1	AUGUSTUS	transcript	10248090	10248879	.	+	.	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	start_codon	10248090	10248092	.	+	0	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	CDS	10248090	10248358	1	+	0	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	exon	10248090	10248358	.	+	.	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	intron	10248359	10248433	.	+	.	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	CDS	10248434	10248505	1	+	1	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	exon	10248434	10248505	.	+	.	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	intron	10248506	10248617	.	+	.	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	CDS	10248618	10248726	1	+	1	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	exon	10248618	10248726	.	+	.	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	intron	10248727	10248825	.	+	.	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	CDS	10248826	10248879	1	+	0	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	exon	10248826	10248879	.	+	.	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
Ledus.S1	AUGUSTUS	stop_codon	10248880	10248882	.	+	0	transcript_id "Ledus.S1G104400.t1"; gene_id "Ledus.S1G104400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2792.t1 is derived from g226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3805731	3807648	.	-	.	Ledus.S1G021300
Ledus.S1	AUGUSTUS	transcript	3805731	3807648	.	-	.	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	stop_codon	3805728	3805730	.	-	0	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	CDS	3805731	3806000	1	-	0	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	exon	3805731	3806000	.	-	.	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	intron	3806001	3806104	.	-	.	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	CDS	3806105	3806907	1	-	2	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	exon	3806105	3806907	.	-	.	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	intron	3806908	3806999	.	-	.	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	CDS	3807000	3807132	1	-	0	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	exon	3807000	3807132	.	-	.	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	intron	3807133	3807216	.	-	.	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	CDS	3807217	3807648	0.71	-	0	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	exon	3807217	3807648	.	-	.	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
Ledus.S1	AUGUSTUS	start_codon	3807646	3807648	.	-	0	transcript_id "Ledus.S1G021300.t1"; gene_id "Ledus.S1G021300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12247.t1 is derived from g5867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10631622	10632290	.	-	.	Ledus.S4G140300
Ledus.S4	AUGUSTUS	transcript	10631622	10632290	.	-	.	transcript_id "Ledus.S4G140300.t1"; gene_id "Ledus.S4G140300"
Ledus.S4	AUGUSTUS	stop_codon	10631619	10631621	.	-	0	transcript_id "Ledus.S4G140300.t1"; gene_id "Ledus.S4G140300"
Ledus.S4	AUGUSTUS	CDS	10631622	10632290	0.59	-	0	transcript_id "Ledus.S4G140300.t1"; gene_id "Ledus.S4G140300"
Ledus.S4	AUGUSTUS	exon	10631622	10632290	.	-	.	transcript_id "Ledus.S4G140300.t1"; gene_id "Ledus.S4G140300"
Ledus.S4	AUGUSTUS	start_codon	10632288	10632290	.	-	0	transcript_id "Ledus.S4G140300.t1"; gene_id "Ledus.S4G140300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10545.t1 is derived from g11575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16048037	16051481	.	-	.	Ledus.S3G202200
Ledus.S3	AUGUSTUS	transcript	16048037	16051481	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	stop_codon	16048034	16048036	.	-	0	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16048037	16048124	1	-	1	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16048037	16048124	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16048125	16048219	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16048220	16048285	1	-	1	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16048220	16048285	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16048286	16048359	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16048360	16048391	1	-	0	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16048360	16048391	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16048392	16048473	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16048474	16048541	1	-	2	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16048474	16048541	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16048542	16048615	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16048616	16048706	1	-	0	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16048616	16048706	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16048707	16048895	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16048896	16048961	1	-	0	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16048896	16048961	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16048962	16049099	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16049100	16049212	1	-	2	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16049100	16049212	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16049213	16049348	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16049349	16049544	1	-	0	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16049349	16049544	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16049545	16049676	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16049677	16049744	1	-	2	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16049677	16049744	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16049745	16049863	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16049864	16049993	1	-	0	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16049864	16049993	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16049994	16050108	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16050109	16050170	1	-	2	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16050109	16050170	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16050171	16050347	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16050348	16050426	1	-	0	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16050348	16050426	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16050427	16050585	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16050586	16050652	1	-	1	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16050586	16050652	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	intron	16050653	16051449	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	CDS	16051450	16051481	1	-	0	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	exon	16051450	16051481	.	-	.	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
Ledus.S3	AUGUSTUS	start_codon	16051479	16051481	.	-	0	transcript_id "Ledus.S3G202200.t1"; gene_id "Ledus.S3G202200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9442.t1 is derived from g10472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6783188	6783493	.	-	.	Ledus.S3G091900
Ledus.S3	AUGUSTUS	transcript	6783188	6783493	.	-	.	transcript_id "Ledus.S3G091900.t1"; gene_id "Ledus.S3G091900"
Ledus.S3	AUGUSTUS	stop_codon	6783185	6783187	.	-	0	transcript_id "Ledus.S3G091900.t1"; gene_id "Ledus.S3G091900"
Ledus.S3	AUGUSTUS	CDS	6783188	6783493	0.23	-	0	transcript_id "Ledus.S3G091900.t1"; gene_id "Ledus.S3G091900"
Ledus.S3	AUGUSTUS	exon	6783188	6783493	.	-	.	transcript_id "Ledus.S3G091900.t1"; gene_id "Ledus.S3G091900"
Ledus.S3	AUGUSTUS	start_codon	6783491	6783493	.	-	0	transcript_id "Ledus.S3G091900.t1"; gene_id "Ledus.S3G091900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8662.t1 is derived from g9692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1230386	1230736	.	-	.	Ledus.S3G013900
Ledus.S3	AUGUSTUS	transcript	1230386	1230736	.	-	.	transcript_id "Ledus.S3G013900.t1"; gene_id "Ledus.S3G013900"
Ledus.S3	AUGUSTUS	stop_codon	1230383	1230385	.	-	0	transcript_id "Ledus.S3G013900.t1"; gene_id "Ledus.S3G013900"
Ledus.S3	AUGUSTUS	CDS	1230386	1230736	0.84	-	0	transcript_id "Ledus.S3G013900.t1"; gene_id "Ledus.S3G013900"
Ledus.S3	AUGUSTUS	exon	1230386	1230736	.	-	.	transcript_id "Ledus.S3G013900.t1"; gene_id "Ledus.S3G013900"
Ledus.S3	AUGUSTUS	start_codon	1230734	1230736	.	-	0	transcript_id "Ledus.S3G013900.t1"; gene_id "Ledus.S3G013900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg177.t1 is derived from g7038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	547042	548325	.	-	.	Ledus.S2G005900
Ledus.S2	AUGUSTUS	transcript	547042	548325	.	-	.	transcript_id "Ledus.S2G005900.t1"; gene_id "Ledus.S2G005900"
Ledus.S2	AUGUSTUS	stop_codon	547039	547041	.	-	0	transcript_id "Ledus.S2G005900.t1"; gene_id "Ledus.S2G005900"
Ledus.S2	AUGUSTUS	CDS	547042	548325	1	-	0	transcript_id "Ledus.S2G005900.t1"; gene_id "Ledus.S2G005900"
Ledus.S2	AUGUSTUS	exon	547042	548325	.	-	.	transcript_id "Ledus.S2G005900.t1"; gene_id "Ledus.S2G005900"
Ledus.S2	AUGUSTUS	start_codon	548323	548325	.	-	0	transcript_id "Ledus.S2G005900.t1"; gene_id "Ledus.S2G005900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11434.t1 is derived from g5052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4264634	4269144	.	-	.	Ledus.S4G059000
Ledus.S4	AUGUSTUS	transcript	4264634	4269144	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	stop_codon	4264631	4264633	.	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4264634	4264648	0.22	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4264634	4264648	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4264649	4264802	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4264803	4264833	0.72	-	1	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4264803	4264833	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4264834	4264977	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4264978	4265085	0.82	-	1	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4264978	4265085	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4265086	4265152	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4265153	4265331	0.77	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4265153	4265331	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4265332	4265501	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4265502	4265528	0.79	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4265502	4265528	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4265529	4265616	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4265617	4265718	1	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4265617	4265718	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4265719	4265812	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4265813	4265893	1	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4265813	4265893	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4265894	4265993	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4265994	4266089	1	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4265994	4266089	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4266090	4266192	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4266193	4266297	0.84	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4266193	4266297	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4266298	4266403	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4266404	4266478	0.99	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4266404	4266478	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4266479	4266561	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4266562	4266621	1	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4266562	4266621	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4266622	4266724	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4266725	4266855	1	-	2	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4266725	4266855	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4266856	4266943	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4266944	4267019	1	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4266944	4267019	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4267020	4267121	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4267122	4267191	1	-	1	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4267122	4267191	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4267192	4267391	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4267392	4267453	1	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4267392	4267453	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4267454	4267557	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4267558	4267641	0.63	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4267558	4267641	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4267642	4267746	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4267747	4267821	1	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4267747	4267821	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4267822	4267986	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4267987	4268124	1	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4267987	4268124	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4268125	4268216	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4268217	4268275	1	-	2	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4268217	4268275	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4268276	4268394	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4268395	4268559	1	-	2	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4268395	4268559	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	intron	4268560	4268810	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	CDS	4268811	4269144	1	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	exon	4268811	4269144	.	-	.	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
Ledus.S4	AUGUSTUS	start_codon	4269142	4269144	.	-	0	transcript_id "Ledus.S4G059000.t1"; gene_id "Ledus.S4G059000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1021.t1 is derived from g7882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6796471	6797772	.	+	.	Ledus.S2G090300
Ledus.S2	AUGUSTUS	transcript	6796471	6797772	.	+	.	transcript_id "Ledus.S2G090300.t1"; gene_id "Ledus.S2G090300"
Ledus.S2	AUGUSTUS	start_codon	6796471	6796473	.	+	0	transcript_id "Ledus.S2G090300.t1"; gene_id "Ledus.S2G090300"
Ledus.S2	AUGUSTUS	CDS	6796471	6796525	0.78	+	0	transcript_id "Ledus.S2G090300.t1"; gene_id "Ledus.S2G090300"
Ledus.S2	AUGUSTUS	exon	6796471	6796525	.	+	.	transcript_id "Ledus.S2G090300.t1"; gene_id "Ledus.S2G090300"
Ledus.S2	AUGUSTUS	intron	6796526	6797056	.	+	.	transcript_id "Ledus.S2G090300.t1"; gene_id "Ledus.S2G090300"
Ledus.S2	AUGUSTUS	CDS	6797057	6797772	0.96	+	2	transcript_id "Ledus.S2G090300.t1"; gene_id "Ledus.S2G090300"
Ledus.S2	AUGUSTUS	exon	6797057	6797772	.	+	.	transcript_id "Ledus.S2G090300.t1"; gene_id "Ledus.S2G090300"
Ledus.S2	AUGUSTUS	stop_codon	6797773	6797775	.	+	0	transcript_id "Ledus.S2G090300.t1"; gene_id "Ledus.S2G090300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6427.t1 is derived from g3870.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31202839	31204520	.	-	.	Ledus.S1G384800
Ledus.S1	AUGUSTUS	transcript	31202839	31204520	.	-	.	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	stop_codon	31202836	31202838	.	-	0	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	CDS	31202839	31203538	0.93	-	1	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	exon	31202839	31203538	.	-	.	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	intron	31203539	31203654	.	-	.	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	CDS	31203655	31203824	0.94	-	0	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	exon	31203655	31203824	.	-	.	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	intron	31203825	31203952	.	-	.	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	CDS	31203953	31204065	1	-	2	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	exon	31203953	31204065	.	-	.	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	intron	31204066	31204444	.	-	.	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	CDS	31204445	31204520	0.89	-	0	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	exon	31204445	31204520	.	-	.	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
Ledus.S1	AUGUSTUS	start_codon	31204518	31204520	.	-	0	transcript_id "Ledus.S1G384800.t1"; gene_id "Ledus.S1G384800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6979.t1 is derived from g6510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	519106	521007	.	-	.	Ledus.C7G004000
Ledus.C7	AUGUSTUS	transcript	519106	521007	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	stop_codon	519103	519105	.	-	0	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	CDS	519106	519172	1	-	1	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	exon	519106	519172	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	intron	519173	519253	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	CDS	519254	519350	1	-	2	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	exon	519254	519350	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	intron	519351	519448	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	CDS	519449	519584	0.97	-	0	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	exon	519449	519584	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	intron	519585	519699	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	CDS	519700	519849	0.91	-	0	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	exon	519700	519849	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	intron	519850	519942	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	CDS	519943	520012	1	-	1	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	exon	519943	520012	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	intron	520013	520102	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	CDS	520103	520224	1	-	0	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	exon	520103	520224	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	intron	520225	520308	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	CDS	520309	520444	1	-	1	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	exon	520309	520444	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	intron	520445	520532	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	CDS	520533	520879	1	-	0	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	exon	520533	520879	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	intron	520880	520953	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	CDS	520954	521007	0.66	-	0	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	exon	520954	521007	.	-	.	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
Ledus.C7	AUGUSTUS	start_codon	521005	521007	.	-	0	transcript_id "Ledus.C7G004000.t1"; gene_id "Ledus.C7G004000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10937.t1 is derived from g4555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	703154	706275	.	+	.	Ledus.S4G009300
Ledus.S4	AUGUSTUS	transcript	703154	706275	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	start_codon	703154	703156	.	+	0	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	CDS	703154	703382	0.85	+	0	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	exon	703154	703382	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	intron	703383	703484	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	CDS	703485	703618	0.96	+	2	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	exon	703485	703618	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	intron	703619	703712	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	CDS	703713	703842	1	+	0	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	exon	703713	703842	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	intron	703843	704011	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	CDS	704012	704169	1	+	2	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	exon	704012	704169	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	intron	704170	704281	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	CDS	704282	704383	0.87	+	0	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	exon	704282	704383	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	intron	704384	704490	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	CDS	704491	704595	0.98	+	0	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	exon	704491	704595	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	intron	704596	704682	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	CDS	704683	704811	0.99	+	0	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	exon	704683	704811	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	intron	704812	704920	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	CDS	704921	705061	0.98	+	0	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	exon	704921	705061	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	intron	705062	705144	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	CDS	705145	705245	1	+	0	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	exon	705145	705245	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	intron	705246	705320	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	CDS	705321	705392	0.75	+	1	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	exon	705321	705392	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	intron	705393	705491	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	CDS	705492	706275	0.77	+	1	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	exon	705492	706275	.	+	.	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
Ledus.S4	AUGUSTUS	stop_codon	706276	706278	.	+	0	transcript_id "Ledus.S4G009300.t1"; gene_id "Ledus.S4G009300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3979.t1 is derived from g1415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13901046	13901708	.	+	.	Ledus.S1G140000
Ledus.S1	AUGUSTUS	transcript	13901046	13901708	.	+	.	transcript_id "Ledus.S1G140000.t1"; gene_id "Ledus.S1G140000"
Ledus.S1	AUGUSTUS	start_codon	13901046	13901048	.	+	0	transcript_id "Ledus.S1G140000.t1"; gene_id "Ledus.S1G140000"
Ledus.S1	AUGUSTUS	CDS	13901046	13901526	0.21	+	0	transcript_id "Ledus.S1G140000.t1"; gene_id "Ledus.S1G140000"
Ledus.S1	AUGUSTUS	exon	13901046	13901526	.	+	.	transcript_id "Ledus.S1G140000.t1"; gene_id "Ledus.S1G140000"
Ledus.S1	AUGUSTUS	intron	13901527	13901610	.	+	.	transcript_id "Ledus.S1G140000.t1"; gene_id "Ledus.S1G140000"
Ledus.S1	AUGUSTUS	CDS	13901611	13901708	0.42	+	2	transcript_id "Ledus.S1G140000.t1"; gene_id "Ledus.S1G140000"
Ledus.S1	AUGUSTUS	exon	13901611	13901708	.	+	.	transcript_id "Ledus.S1G140000.t1"; gene_id "Ledus.S1G140000"
Ledus.S1	AUGUSTUS	stop_codon	13901709	13901711	.	+	0	transcript_id "Ledus.S1G140000.t1"; gene_id "Ledus.S1G140000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2655.t1 is derived from g88.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1222496	1223014	.	+	.	Ledus.S1G007600
Ledus.S1	AUGUSTUS	transcript	1222496	1223014	.	+	.	transcript_id "Ledus.S1G007600.t1"; gene_id "Ledus.S1G007600"
Ledus.S1	AUGUSTUS	start_codon	1222496	1222498	.	+	0	transcript_id "Ledus.S1G007600.t1"; gene_id "Ledus.S1G007600"
Ledus.S1	AUGUSTUS	CDS	1222496	1223014	0.47	+	0	transcript_id "Ledus.S1G007600.t1"; gene_id "Ledus.S1G007600"
Ledus.S1	AUGUSTUS	exon	1222496	1223014	.	+	.	transcript_id "Ledus.S1G007600.t1"; gene_id "Ledus.S1G007600"
Ledus.S1	AUGUSTUS	stop_codon	1223015	1223017	.	+	0	transcript_id "Ledus.S1G007600.t1"; gene_id "Ledus.S1G007600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2814.t1 is derived from g248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3907864	3908657	.	-	.	Ledus.S1G023500
Ledus.S1	AUGUSTUS	transcript	3907864	3908657	.	-	.	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	stop_codon	3907861	3907863	.	-	0	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	CDS	3907864	3907937	0.99	-	2	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	exon	3907864	3907937	.	-	.	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	intron	3907938	3908134	.	-	.	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	CDS	3908135	3908204	0.71	-	0	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	exon	3908135	3908204	.	-	.	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	intron	3908205	3908442	.	-	.	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	CDS	3908443	3908551	0.52	-	1	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	exon	3908443	3908551	.	-	.	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	intron	3908552	3908640	.	-	.	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	CDS	3908641	3908657	0.54	-	0	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	exon	3908641	3908657	.	-	.	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
Ledus.S1	AUGUSTUS	start_codon	3908655	3908657	.	-	0	transcript_id "Ledus.S1G023500.t1"; gene_id "Ledus.S1G023500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg371.t1 is derived from g7232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1998580	1999960	.	-	.	Ledus.S2G025300
Ledus.S2	AUGUSTUS	transcript	1998580	1999960	.	-	.	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	stop_codon	1998577	1998579	.	-	0	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	CDS	1998580	1999288	1	-	1	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	exon	1998580	1999288	.	-	.	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	intron	1999289	1999387	.	-	.	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	CDS	1999388	1999518	1	-	0	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	exon	1999388	1999518	.	-	.	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	intron	1999519	1999603	.	-	.	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	CDS	1999604	1999742	1	-	1	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	exon	1999604	1999742	.	-	.	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	intron	1999743	1999820	.	-	.	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	CDS	1999821	1999960	0.96	-	0	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	exon	1999821	1999960	.	-	.	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
Ledus.S2	AUGUSTUS	start_codon	1999958	1999960	.	-	0	transcript_id "Ledus.S2G025300.t1"; gene_id "Ledus.S2G025300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12225.t1 is derived from g5844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10495158	10496265	.	-	.	Ledus.S4G138100
Ledus.S4	AUGUSTUS	transcript	10495158	10496265	.	-	.	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	stop_codon	10495155	10495157	.	-	0	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	CDS	10495158	10495530	1	-	1	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	exon	10495158	10495530	.	-	.	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	intron	10495531	10495618	.	-	.	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	CDS	10495619	10495775	0.99	-	2	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	exon	10495619	10495775	.	-	.	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	intron	10495776	10495847	.	-	.	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	CDS	10495848	10496079	1	-	0	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	exon	10495848	10496079	.	-	.	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	intron	10496080	10496154	.	-	.	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	CDS	10496155	10496265	0.95	-	0	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	exon	10496155	10496265	.	-	.	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
Ledus.S4	AUGUSTUS	start_codon	10496263	10496265	.	-	0	transcript_id "Ledus.S4G138100.t1"; gene_id "Ledus.S4G138100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11781.t1 is derived from g5400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6746306	6747412	.	-	.	Ledus.S4G093700
Ledus.S4	AUGUSTUS	transcript	6746306	6747412	.	-	.	transcript_id "Ledus.S4G093700.t1"; gene_id "Ledus.S4G093700"
Ledus.S4	AUGUSTUS	stop_codon	6746303	6746305	.	-	0	transcript_id "Ledus.S4G093700.t1"; gene_id "Ledus.S4G093700"
Ledus.S4	AUGUSTUS	CDS	6746306	6747412	0.99	-	0	transcript_id "Ledus.S4G093700.t1"; gene_id "Ledus.S4G093700"
Ledus.S4	AUGUSTUS	exon	6746306	6747412	.	-	.	transcript_id "Ledus.S4G093700.t1"; gene_id "Ledus.S4G093700"
Ledus.S4	AUGUSTUS	start_codon	6747410	6747412	.	-	0	transcript_id "Ledus.S4G093700.t1"; gene_id "Ledus.S4G093700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6294.t1 is derived from g3737.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30160729	30161235	.	-	.	Ledus.S1G371500
Ledus.S1	AUGUSTUS	transcript	30160729	30161235	.	-	.	transcript_id "Ledus.S1G371500.t1"; gene_id "Ledus.S1G371500"
Ledus.S1	AUGUSTUS	stop_codon	30160726	30160728	.	-	0	transcript_id "Ledus.S1G371500.t1"; gene_id "Ledus.S1G371500"
Ledus.S1	AUGUSTUS	CDS	30160729	30161235	0.97	-	0	transcript_id "Ledus.S1G371500.t1"; gene_id "Ledus.S1G371500"
Ledus.S1	AUGUSTUS	exon	30160729	30161235	.	-	.	transcript_id "Ledus.S1G371500.t1"; gene_id "Ledus.S1G371500"
Ledus.S1	AUGUSTUS	start_codon	30161233	30161235	.	-	0	transcript_id "Ledus.S1G371500.t1"; gene_id "Ledus.S1G371500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8521.t1 is derived from g13193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12445268	12446721	.	+	.	Ledus.S5G129900
Ledus.S5	AUGUSTUS	transcript	12445268	12446721	.	+	.	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	start_codon	12445268	12445270	.	+	0	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	CDS	12445268	12445293	0.96	+	0	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	exon	12445268	12445293	.	+	.	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	intron	12445294	12445374	.	+	.	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	CDS	12445375	12445624	1	+	1	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	exon	12445375	12445624	.	+	.	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	intron	12445625	12445739	.	+	.	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	CDS	12445740	12445838	1	+	0	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	exon	12445740	12445838	.	+	.	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	intron	12445839	12445928	.	+	.	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	CDS	12445929	12445973	1	+	0	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	exon	12445929	12445973	.	+	.	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	intron	12445974	12446062	.	+	.	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	CDS	12446063	12446200	1	+	0	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	exon	12446063	12446200	.	+	.	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	intron	12446201	12446376	.	+	.	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	CDS	12446377	12446721	0.88	+	0	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	exon	12446377	12446721	.	+	.	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
Ledus.S5	AUGUSTUS	stop_codon	12446722	12446724	.	+	0	transcript_id "Ledus.S5G129900.t1"; gene_id "Ledus.S5G129900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8419.t1 is derived from g13091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11552003	11553171	.	-	.	Ledus.S5G119700
Ledus.S5	AUGUSTUS	transcript	11552003	11553171	.	-	.	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	stop_codon	11552000	11552002	.	-	0	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	CDS	11552003	11552059	1	-	0	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	exon	11552003	11552059	.	-	.	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	intron	11552060	11552159	.	-	.	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	CDS	11552160	11552216	1	-	0	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	exon	11552160	11552216	.	-	.	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	intron	11552217	11552335	.	-	.	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	CDS	11552336	11552407	1	-	0	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	exon	11552336	11552407	.	-	.	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	intron	11552408	11552488	.	-	.	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	CDS	11552489	11552528	1	-	1	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	exon	11552489	11552528	.	-	.	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	intron	11552529	11552747	.	-	.	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	CDS	11552748	11552851	1	-	0	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	exon	11552748	11552851	.	-	.	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	intron	11552852	11552943	.	-	.	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	CDS	11552944	11553171	0.56	-	0	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	exon	11552944	11553171	.	-	.	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
Ledus.S5	AUGUSTUS	start_codon	11553169	11553171	.	-	0	transcript_id "Ledus.S5G119700.t1"; gene_id "Ledus.S5G119700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9862.t1 is derived from g10892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10649390	10650028	.	+	.	Ledus.S3G133900
Ledus.S3	AUGUSTUS	transcript	10649390	10650028	.	+	.	transcript_id "Ledus.S3G133900.t1"; gene_id "Ledus.S3G133900"
Ledus.S3	AUGUSTUS	start_codon	10649390	10649392	.	+	0	transcript_id "Ledus.S3G133900.t1"; gene_id "Ledus.S3G133900"
Ledus.S3	AUGUSTUS	CDS	10649390	10650028	0.92	+	0	transcript_id "Ledus.S3G133900.t1"; gene_id "Ledus.S3G133900"
Ledus.S3	AUGUSTUS	exon	10649390	10650028	.	+	.	transcript_id "Ledus.S3G133900.t1"; gene_id "Ledus.S3G133900"
Ledus.S3	AUGUSTUS	stop_codon	10650029	10650031	.	+	0	transcript_id "Ledus.S3G133900.t1"; gene_id "Ledus.S3G133900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8611.t1 is derived from g9641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	654939	656462	.	+	.	Ledus.S3G008800
Ledus.S3	AUGUSTUS	transcript	654939	656462	.	+	.	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	start_codon	654939	654941	.	+	0	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	CDS	654939	655006	0.4	+	0	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	exon	654939	655006	.	+	.	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	intron	655007	655126	.	+	.	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	CDS	655127	655225	0.61	+	1	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	exon	655127	655225	.	+	.	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	intron	655226	655443	.	+	.	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	CDS	655444	655777	0.82	+	1	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	exon	655444	655777	.	+	.	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	intron	655778	655883	.	+	.	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	CDS	655884	656121	0.99	+	0	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	exon	655884	656121	.	+	.	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	intron	656122	656217	.	+	.	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	CDS	656218	656462	0.98	+	2	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	exon	656218	656462	.	+	.	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
Ledus.S3	AUGUSTUS	stop_codon	656463	656465	.	+	0	transcript_id "Ledus.S3G008800.t1"; gene_id "Ledus.S3G008800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1663.t1 is derived from g8524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11762472	11763026	.	+	.	Ledus.S2G154500
Ledus.S2	AUGUSTUS	transcript	11762472	11763026	.	+	.	transcript_id "Ledus.S2G154500.t1"; gene_id "Ledus.S2G154500"
Ledus.S2	AUGUSTUS	start_codon	11762472	11762474	.	+	0	transcript_id "Ledus.S2G154500.t1"; gene_id "Ledus.S2G154500"
Ledus.S2	AUGUSTUS	CDS	11762472	11763026	1	+	0	transcript_id "Ledus.S2G154500.t1"; gene_id "Ledus.S2G154500"
Ledus.S2	AUGUSTUS	exon	11762472	11763026	.	+	.	transcript_id "Ledus.S2G154500.t1"; gene_id "Ledus.S2G154500"
Ledus.S2	AUGUSTUS	stop_codon	11763027	11763029	.	+	0	transcript_id "Ledus.S2G154500.t1"; gene_id "Ledus.S2G154500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11038.t1 is derived from g4656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1350211	1354269	.	-	.	Ledus.S4G019400
Ledus.S4	AUGUSTUS	transcript	1350211	1354269	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	stop_codon	1350208	1350210	.	-	0	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	CDS	1350211	1350239	0.92	-	2	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	exon	1350211	1350239	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	intron	1350240	1350993	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	CDS	1350994	1351040	0.41	-	1	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	exon	1350994	1351040	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	intron	1351041	1351694	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	CDS	1351695	1351843	0.42	-	0	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	exon	1351695	1351843	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	intron	1351844	1351968	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	CDS	1351969	1352030	0.92	-	2	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	exon	1351969	1352030	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	intron	1352031	1352509	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	CDS	1352510	1352534	0.81	-	0	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	exon	1352510	1352534	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	intron	1352535	1352683	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	CDS	1352684	1353050	1	-	1	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	exon	1352684	1353050	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	intron	1353051	1353147	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	CDS	1353148	1353874	1	-	2	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	exon	1353148	1353874	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	intron	1353875	1353965	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	CDS	1353966	1354269	0.4	-	0	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	exon	1353966	1354269	.	-	.	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
Ledus.S4	AUGUSTUS	start_codon	1354267	1354269	.	-	0	transcript_id "Ledus.S4G019400.t1"; gene_id "Ledus.S4G019400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6692.t1 is derived from g4135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33296695	33298347	.	-	.	Ledus.S1G411300
Ledus.S1	AUGUSTUS	transcript	33296695	33298347	.	-	.	transcript_id "Ledus.S1G411300.t1"; gene_id "Ledus.S1G411300"
Ledus.S1	AUGUSTUS	stop_codon	33296692	33296694	.	-	0	transcript_id "Ledus.S1G411300.t1"; gene_id "Ledus.S1G411300"
Ledus.S1	AUGUSTUS	CDS	33296695	33297942	1	-	0	transcript_id "Ledus.S1G411300.t1"; gene_id "Ledus.S1G411300"
Ledus.S1	AUGUSTUS	exon	33296695	33297942	.	-	.	transcript_id "Ledus.S1G411300.t1"; gene_id "Ledus.S1G411300"
Ledus.S1	AUGUSTUS	intron	33297943	33298059	.	-	.	transcript_id "Ledus.S1G411300.t1"; gene_id "Ledus.S1G411300"
Ledus.S1	AUGUSTUS	CDS	33298060	33298347	1	-	0	transcript_id "Ledus.S1G411300.t1"; gene_id "Ledus.S1G411300"
Ledus.S1	AUGUSTUS	exon	33298060	33298347	.	-	.	transcript_id "Ledus.S1G411300.t1"; gene_id "Ledus.S1G411300"
Ledus.S1	AUGUSTUS	start_codon	33298345	33298347	.	-	0	transcript_id "Ledus.S1G411300.t1"; gene_id "Ledus.S1G411300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3924.t1 is derived from g1360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13576391	13577308	.	-	.	Ledus.S1G134500
Ledus.S1	AUGUSTUS	transcript	13576391	13577308	.	-	.	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	stop_codon	13576388	13576390	.	-	0	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	CDS	13576391	13576498	0.5	-	0	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	exon	13576391	13576498	.	-	.	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	intron	13576499	13576600	.	-	.	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	CDS	13576601	13576672	1	-	0	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	exon	13576601	13576672	.	-	.	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	intron	13576673	13576749	.	-	.	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	CDS	13576750	13576812	0.99	-	0	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	exon	13576750	13576812	.	-	.	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	intron	13576813	13576924	.	-	.	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	CDS	13576925	13577308	0.75	-	0	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	exon	13576925	13577308	.	-	.	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
Ledus.S1	AUGUSTUS	start_codon	13577306	13577308	.	-	0	transcript_id "Ledus.S1G134500.t1"; gene_id "Ledus.S1G134500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7697.t1 is derived from g12368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5237006	5241535	.	-	.	Ledus.S5G047500
Ledus.S5	AUGUSTUS	transcript	5237006	5241535	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	stop_codon	5237003	5237005	.	-	0	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	CDS	5237006	5237123	0.38	-	1	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	exon	5237006	5237123	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	intron	5237124	5237290	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	CDS	5237291	5237628	1	-	0	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	exon	5237291	5237628	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	intron	5237629	5237702	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	CDS	5237703	5238135	1	-	1	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	exon	5237703	5238135	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	intron	5238136	5238289	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	CDS	5238290	5238542	1	-	2	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	exon	5238290	5238542	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	intron	5238543	5238701	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	CDS	5238702	5239035	1	-	0	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	exon	5238702	5239035	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	intron	5239036	5239277	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	CDS	5239278	5240468	0.55	-	0	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	exon	5239278	5240468	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	intron	5240469	5240554	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	CDS	5240555	5241211	0.99	-	0	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	exon	5240555	5241211	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	intron	5241212	5241346	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	CDS	5241347	5241535	0.89	-	0	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	exon	5241347	5241535	.	-	.	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
Ledus.S5	AUGUSTUS	start_codon	5241533	5241535	.	-	0	transcript_id "Ledus.S5G047500.t1"; gene_id "Ledus.S5G047500"
# This transcript jg11112.t2 is derived from g4729.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11113.t1 is derived from g4731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1913953	1914591	.	+	.	Ledus.S4G026900
Ledus.S4	AUGUSTUS	transcript	1913953	1914591	.	+	.	transcript_id "Ledus.S4G026900.t1"; gene_id "Ledus.S4G026900"
Ledus.S4	AUGUSTUS	start_codon	1913953	1913955	.	+	0	transcript_id "Ledus.S4G026900.t1"; gene_id "Ledus.S4G026900"
Ledus.S4	AUGUSTUS	CDS	1913953	1914591	0.94	+	0	transcript_id "Ledus.S4G026900.t1"; gene_id "Ledus.S4G026900"
Ledus.S4	AUGUSTUS	exon	1913953	1914591	.	+	.	transcript_id "Ledus.S4G026900.t1"; gene_id "Ledus.S4G026900"
Ledus.S4	AUGUSTUS	stop_codon	1914592	1914594	.	+	0	transcript_id "Ledus.S4G026900.t1"; gene_id "Ledus.S4G026900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4556.t1 is derived from g1993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17664768	17668174	.	-	.	Ledus.S1G197700
Ledus.S1	AUGUSTUS	transcript	17664768	17668174	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	stop_codon	17664765	17664767	.	-	0	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17664768	17664911	0.54	-	0	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17664768	17664911	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17664912	17665021	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17665022	17665179	0.99	-	2	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17665022	17665179	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17665180	17665272	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17665273	17665345	1	-	0	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17665273	17665345	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17665346	17665473	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17665474	17665572	1	-	0	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17665474	17665572	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17665573	17665659	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17665660	17665759	1	-	1	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17665660	17665759	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17665760	17665843	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17665844	17665933	1	-	1	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17665844	17665933	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17665934	17666027	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17666028	17666083	1	-	0	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17666028	17666083	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17666084	17666169	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17666170	17666267	1	-	2	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17666170	17666267	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17666268	17666361	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17666362	17666552	1	-	1	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17666362	17666552	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17666553	17666642	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17666643	17666763	0.93	-	2	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17666643	17666763	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17666764	17666895	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17666896	17666992	0.93	-	0	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17666896	17666992	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17666993	17667095	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17667096	17667191	1	-	0	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17667096	17667191	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17667192	17667267	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17667268	17667371	1	-	2	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17667268	17667371	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17667372	17667455	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17667456	17667592	1	-	1	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17667456	17667592	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17667593	17667686	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17667687	17667849	1	-	2	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17667687	17667849	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17667850	17667938	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17667939	17668107	1	-	0	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17667939	17668107	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	intron	17668108	17668171	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	CDS	17668172	17668174	1	-	0	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	exon	17668172	17668174	.	-	.	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
Ledus.S1	AUGUSTUS	start_codon	17668172	17668174	.	-	0	transcript_id "Ledus.S1G197700.t1"; gene_id "Ledus.S1G197700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4093.t1 is derived from g1529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14665971	14667668	.	+	.	Ledus.S1G151400
Ledus.S1	AUGUSTUS	transcript	14665971	14667668	.	+	.	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	start_codon	14665971	14665973	.	+	0	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	CDS	14665971	14666031	1	+	0	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	exon	14665971	14666031	.	+	.	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	intron	14666032	14666192	.	+	.	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	CDS	14666193	14666920	1	+	2	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	exon	14666193	14666920	.	+	.	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	intron	14666921	14667008	.	+	.	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	CDS	14667009	14667222	0.98	+	0	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	exon	14667009	14667222	.	+	.	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	intron	14667223	14667429	.	+	.	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	CDS	14667430	14667668	0.99	+	2	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	exon	14667430	14667668	.	+	.	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
Ledus.S1	AUGUSTUS	stop_codon	14667669	14667671	.	+	0	transcript_id "Ledus.S1G151400.t1"; gene_id "Ledus.S1G151400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1469.t1 is derived from g8330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10358467	10359064	.	+	.	Ledus.S2G135100
Ledus.S2	AUGUSTUS	transcript	10358467	10359064	.	+	.	transcript_id "Ledus.S2G135100.t1"; gene_id "Ledus.S2G135100"
Ledus.S2	AUGUSTUS	start_codon	10358467	10358469	.	+	0	transcript_id "Ledus.S2G135100.t1"; gene_id "Ledus.S2G135100"
Ledus.S2	AUGUSTUS	CDS	10358467	10358654	0.27	+	0	transcript_id "Ledus.S2G135100.t1"; gene_id "Ledus.S2G135100"
Ledus.S2	AUGUSTUS	exon	10358467	10358654	.	+	.	transcript_id "Ledus.S2G135100.t1"; gene_id "Ledus.S2G135100"
Ledus.S2	AUGUSTUS	intron	10358655	10358745	.	+	.	transcript_id "Ledus.S2G135100.t1"; gene_id "Ledus.S2G135100"
Ledus.S2	AUGUSTUS	CDS	10358746	10359064	0.25	+	1	transcript_id "Ledus.S2G135100.t1"; gene_id "Ledus.S2G135100"
Ledus.S2	AUGUSTUS	exon	10358746	10359064	.	+	.	transcript_id "Ledus.S2G135100.t1"; gene_id "Ledus.S2G135100"
Ledus.S2	AUGUSTUS	stop_codon	10359065	10359067	.	+	0	transcript_id "Ledus.S2G135100.t1"; gene_id "Ledus.S2G135100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11842.t1 is derived from g5461.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7236504	7237343	.	-	.	Ledus.S4G099800
Ledus.S4	AUGUSTUS	transcript	7236504	7237343	.	-	.	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	stop_codon	7236501	7236503	.	-	0	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	CDS	7236504	7236572	1	-	0	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	exon	7236504	7236572	.	-	.	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	intron	7236573	7236752	.	-	.	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	CDS	7236753	7236866	1	-	0	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	exon	7236753	7236866	.	-	.	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	intron	7236867	7237188	.	-	.	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	CDS	7237189	7237213	1	-	1	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	exon	7237189	7237213	.	-	.	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	intron	7237214	7237320	.	-	.	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	CDS	7237321	7237343	1	-	0	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	exon	7237321	7237343	.	-	.	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
Ledus.S4	AUGUSTUS	start_codon	7237341	7237343	.	-	0	transcript_id "Ledus.S4G099800.t1"; gene_id "Ledus.S4G099800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5486.t1 is derived from g2925.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24493472	24499264	.	+	.	Ledus.S1G290700
Ledus.S1	AUGUSTUS	transcript	24493472	24499264	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	start_codon	24493472	24493474	.	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24493472	24493587	0.16	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24493472	24493587	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24493588	24493735	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24493736	24493814	0.17	+	1	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24493736	24493814	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24493815	24494048	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24494049	24494158	0.26	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24494049	24494158	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24494159	24494282	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24494283	24494328	0.61	+	1	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24494283	24494328	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24494329	24494877	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24494878	24495616	0.64	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24494878	24495616	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24495617	24495836	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24495837	24495937	1	+	2	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24495837	24495937	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24495938	24496140	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24496141	24496260	1	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24496141	24496260	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24496261	24496405	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24496406	24496495	1	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24496406	24496495	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24496496	24496567	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24496568	24496683	1	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24496568	24496683	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24496684	24496808	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24496809	24496908	1	+	1	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24496809	24496908	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24496909	24497072	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24497073	24497144	0.98	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24497073	24497144	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24497145	24497246	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24497247	24497294	1	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24497247	24497294	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24497295	24497398	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24497399	24497476	1	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24497399	24497476	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24497477	24497608	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24497609	24497728	0.99	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24497609	24497728	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24497729	24497830	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24497831	24497936	0.98	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24497831	24497936	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24497937	24498029	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24498030	24498193	1	+	2	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24498030	24498193	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24498194	24498316	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24498317	24498451	1	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24498317	24498451	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24498452	24498552	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24498553	24498683	0.71	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24498553	24498683	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24498684	24498773	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24498774	24498836	1	+	1	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24498774	24498836	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24498837	24498971	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24498972	24499050	0.99	+	1	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24498972	24499050	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24499051	24499156	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24499157	24499264	1	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24499157	24499264	.	+	.	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	stop_codon	24499265	24499267	.	+	0	transcript_id "Ledus.S1G290700.t1"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	transcript	24493472	24499264	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	start_codon	24493472	24493474	.	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24493472	24493587	0.15	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24493472	24493587	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24493588	24493735	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24493736	24493814	0.16	+	1	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24493736	24493814	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24493815	24494048	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24494049	24494158	0.23	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24494049	24494158	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24494159	24494282	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24494283	24494328	0.61	+	1	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24494283	24494328	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24494329	24494877	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24494878	24495604	0.55	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24494878	24495604	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24495605	24495836	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24495837	24495937	1	+	2	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24495837	24495937	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24495938	24496140	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24496141	24496260	1	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24496141	24496260	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24496261	24496405	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24496406	24496495	1	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24496406	24496495	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24496496	24496567	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24496568	24496683	1	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24496568	24496683	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24496684	24496808	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24496809	24496908	1	+	1	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24496809	24496908	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24496909	24497072	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24497073	24497144	0.98	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24497073	24497144	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24497145	24497246	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24497247	24497294	1	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24497247	24497294	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24497295	24497398	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24497399	24497476	1	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24497399	24497476	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24497477	24497608	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24497609	24497728	0.97	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24497609	24497728	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24497729	24497830	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24497831	24497936	0.93	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24497831	24497936	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24497937	24498029	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24498030	24498193	1	+	2	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24498030	24498193	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24498194	24498316	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24498317	24498451	0.99	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24498317	24498451	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24498452	24498552	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24498553	24498683	0.67	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24498553	24498683	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24498684	24498773	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24498774	24498836	1	+	1	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24498774	24498836	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24498837	24498971	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24498972	24499050	1	+	1	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24498972	24499050	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	intron	24499051	24499156	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	CDS	24499157	24499264	1	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	exon	24499157	24499264	.	+	.	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
Ledus.S1	AUGUSTUS	stop_codon	24499265	24499267	.	+	0	transcript_id "Ledus.S1G290700.t2"; gene_id "Ledus.S1G290700"
# This transcript jg165.t2 is derived from g7026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg165.t3 is derived from g7026.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg166.t1 is derived from g7027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	496046	498506	.	-	.	Ledus.S2G004800
Ledus.S2	AUGUSTUS	transcript	496046	498506	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	stop_codon	496043	496045	.	-	0	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	CDS	496046	496141	0.93	-	0	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	exon	496046	496141	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	intron	496142	496233	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	CDS	496234	496342	1	-	1	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	exon	496234	496342	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	intron	496343	496422	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	CDS	496423	496516	0.99	-	2	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	exon	496423	496516	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	intron	496517	496623	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	CDS	496624	496687	0.99	-	0	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	exon	496624	496687	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	intron	496688	496796	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	CDS	496797	496909	1	-	2	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	exon	496797	496909	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	intron	496910	497051	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	CDS	497052	497178	1	-	0	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	exon	497052	497178	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	intron	497179	497262	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	CDS	497263	497412	1	-	0	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	exon	497263	497412	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	intron	497413	497577	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	CDS	497578	497674	1	-	1	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	exon	497578	497674	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	intron	497675	497863	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	CDS	497864	498114	1	-	0	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	exon	497864	498114	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	intron	498115	498323	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	CDS	498324	498506	0.94	-	0	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	exon	498324	498506	.	-	.	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
Ledus.S2	AUGUSTUS	start_codon	498504	498506	.	-	0	transcript_id "Ledus.S2G004800.t1"; gene_id "Ledus.S2G004800"
# This transcript jg9285.t2 is derived from g10315.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9286.t1 is derived from g10316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5790493	5792214	.	+	.	Ledus.S3G076300
Ledus.S3	AUGUSTUS	transcript	5790493	5792214	.	+	.	transcript_id "Ledus.S3G076300.t1"; gene_id "Ledus.S3G076300"
Ledus.S3	AUGUSTUS	start_codon	5790493	5790495	.	+	0	transcript_id "Ledus.S3G076300.t1"; gene_id "Ledus.S3G076300"
Ledus.S3	AUGUSTUS	CDS	5790493	5791007	0.97	+	0	transcript_id "Ledus.S3G076300.t1"; gene_id "Ledus.S3G076300"
Ledus.S3	AUGUSTUS	exon	5790493	5791007	.	+	.	transcript_id "Ledus.S3G076300.t1"; gene_id "Ledus.S3G076300"
Ledus.S3	AUGUSTUS	intron	5791008	5791244	.	+	.	transcript_id "Ledus.S3G076300.t1"; gene_id "Ledus.S3G076300"
Ledus.S3	AUGUSTUS	CDS	5791245	5792214	0.99	+	1	transcript_id "Ledus.S3G076300.t1"; gene_id "Ledus.S3G076300"
Ledus.S3	AUGUSTUS	exon	5791245	5792214	.	+	.	transcript_id "Ledus.S3G076300.t1"; gene_id "Ledus.S3G076300"
Ledus.S3	AUGUSTUS	stop_codon	5792215	5792217	.	+	0	transcript_id "Ledus.S3G076300.t1"; gene_id "Ledus.S3G076300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5111.t1 is derived from g2550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21767671	21769489	.	+	.	Ledus.S1G253200
Ledus.S1	AUGUSTUS	transcript	21767671	21769489	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	start_codon	21767671	21767673	.	+	0	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	CDS	21767671	21767899	0.73	+	0	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	exon	21767671	21767899	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	intron	21767900	21767980	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	CDS	21767981	21768219	1	+	2	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	exon	21767981	21768219	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	intron	21768220	21768306	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	CDS	21768307	21768433	1	+	0	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	exon	21768307	21768433	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	intron	21768434	21768527	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	CDS	21768528	21768599	1	+	2	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	exon	21768528	21768599	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	intron	21768600	21768687	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	CDS	21768688	21768871	1	+	2	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	exon	21768688	21768871	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	intron	21768872	21768967	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	CDS	21768968	21769106	1	+	1	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	exon	21768968	21769106	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	intron	21769107	21769237	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	CDS	21769238	21769489	0.72	+	0	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	exon	21769238	21769489	.	+	.	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
Ledus.S1	AUGUSTUS	stop_codon	21769490	21769492	.	+	0	transcript_id "Ledus.S1G253200.t1"; gene_id "Ledus.S1G253200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12687.t1 is derived from g6309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13883758	13884415	.	-	.	Ledus.S4G184300
Ledus.S4	AUGUSTUS	transcript	13883758	13884415	.	-	.	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	stop_codon	13883755	13883757	.	-	0	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	CDS	13883758	13883945	0.94	-	2	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	exon	13883758	13883945	.	-	.	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	intron	13883946	13884037	.	-	.	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	CDS	13884038	13884116	1	-	0	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	exon	13884038	13884116	.	-	.	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	intron	13884117	13884219	.	-	.	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	CDS	13884220	13884321	0.81	-	0	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	exon	13884220	13884321	.	-	.	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	intron	13884322	13884406	.	-	.	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	CDS	13884407	13884415	0.9	-	0	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	exon	13884407	13884415	.	-	.	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
Ledus.S4	AUGUSTUS	start_codon	13884413	13884415	.	-	0	transcript_id "Ledus.S4G184300.t1"; gene_id "Ledus.S4G184300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2812.t1 is derived from g246.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3902287	3904151	.	-	.	Ledus.S1G023300
Ledus.S1	AUGUSTUS	transcript	3902287	3904151	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	stop_codon	3902284	3902286	.	-	0	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	CDS	3902287	3902374	0.39	-	1	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	exon	3902287	3902374	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	intron	3902375	3902486	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	CDS	3902487	3902557	0.39	-	0	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	exon	3902487	3902557	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	intron	3902558	3902646	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	CDS	3902647	3902880	1	-	0	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	exon	3902647	3902880	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	intron	3902881	3903009	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	CDS	3903010	3903115	1	-	1	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	exon	3903010	3903115	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	intron	3903116	3903189	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	CDS	3903190	3903360	1	-	1	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	exon	3903190	3903360	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	intron	3903361	3903437	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	CDS	3903438	3903667	1	-	0	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	exon	3903438	3903667	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	intron	3903668	3903757	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	CDS	3903758	3903874	0.95	-	0	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	exon	3903758	3903874	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	intron	3903875	3903977	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	CDS	3903978	3904151	0.95	-	0	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	exon	3903978	3904151	.	-	.	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
Ledus.S1	AUGUSTUS	start_codon	3904149	3904151	.	-	0	transcript_id "Ledus.S1G023300.t1"; gene_id "Ledus.S1G023300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12454.t1 is derived from g6075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12082664	12084494	.	-	.	Ledus.S4G161000
Ledus.S4	AUGUSTUS	transcript	12082664	12084494	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	stop_codon	12082661	12082663	.	-	0	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	CDS	12082664	12082717	0.96	-	0	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	exon	12082664	12082717	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	intron	12082718	12082866	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	CDS	12082867	12082978	0.64	-	1	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	exon	12082867	12082978	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	intron	12082979	12083072	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	CDS	12083073	12083087	0.63	-	1	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	exon	12083073	12083087	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	intron	12083088	12083164	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	CDS	12083165	12083222	0.97	-	2	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	exon	12083165	12083222	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	intron	12083223	12083431	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	CDS	12083432	12083537	0.47	-	0	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	exon	12083432	12083537	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	intron	12083538	12083867	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	CDS	12083868	12083975	0.68	-	0	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	exon	12083868	12083975	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	intron	12083976	12084091	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	CDS	12084092	12084187	1	-	0	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	exon	12084092	12084187	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	intron	12084188	12084263	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	CDS	12084264	12084494	0.43	-	0	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	exon	12084264	12084494	.	-	.	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
Ledus.S4	AUGUSTUS	start_codon	12084492	12084494	.	-	0	transcript_id "Ledus.S4G161000.t1"; gene_id "Ledus.S4G161000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2511.t1 is derived from g9374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18526040	18528393	.	+	.	Ledus.S2G239300
Ledus.S2	AUGUSTUS	transcript	18526040	18528393	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	start_codon	18526040	18526042	.	+	0	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	CDS	18526040	18526138	1	+	0	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	exon	18526040	18526138	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	intron	18526139	18526218	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	CDS	18526219	18526290	1	+	0	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	exon	18526219	18526290	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	intron	18526291	18526380	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	CDS	18526381	18526473	1	+	0	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	exon	18526381	18526473	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	intron	18526474	18526613	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	CDS	18526614	18526695	1	+	0	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	exon	18526614	18526695	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	intron	18526696	18526794	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	CDS	18526795	18526851	1	+	2	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	exon	18526795	18526851	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	intron	18526852	18527064	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	CDS	18527065	18527129	1	+	2	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	exon	18527065	18527129	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	intron	18527130	18527293	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	CDS	18527294	18527389	1	+	0	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	exon	18527294	18527389	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	intron	18527390	18527502	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	CDS	18527503	18527589	1	+	0	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	exon	18527503	18527589	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	intron	18527590	18527688	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	CDS	18527689	18527769	1	+	0	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	exon	18527689	18527769	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	intron	18527770	18527874	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	CDS	18527875	18528393	0.8	+	0	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	exon	18527875	18528393	.	+	.	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
Ledus.S2	AUGUSTUS	stop_codon	18528394	18528396	.	+	0	transcript_id "Ledus.S2G239300.t1"; gene_id "Ledus.S2G239300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5496.t1 is derived from g2935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24620630	24623636	.	-	.	Ledus.S1G291700
Ledus.S1	AUGUSTUS	transcript	24620630	24623636	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	stop_codon	24620627	24620629	.	-	0	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	CDS	24620630	24620908	0.71	-	0	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	exon	24620630	24620908	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	intron	24620909	24621009	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	CDS	24621010	24621210	0.9	-	0	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	exon	24621010	24621210	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	intron	24621211	24621339	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	CDS	24621340	24621480	1	-	0	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	exon	24621340	24621480	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	intron	24621481	24621628	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	CDS	24621629	24621859	0.95	-	0	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	exon	24621629	24621859	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	intron	24621860	24621979	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	CDS	24621980	24622703	0.68	-	1	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	exon	24621980	24622703	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	intron	24622704	24622792	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	CDS	24622793	24622921	0.99	-	1	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	exon	24622793	24622921	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	intron	24622922	24623015	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	CDS	24623016	24623102	0.58	-	1	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	exon	24623016	24623102	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	intron	24623103	24623330	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	CDS	24623331	24623347	0.63	-	0	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	exon	24623331	24623347	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	intron	24623348	24623576	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	CDS	24623577	24623636	0.93	-	0	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	exon	24623577	24623636	.	-	.	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
Ledus.S1	AUGUSTUS	start_codon	24623634	24623636	.	-	0	transcript_id "Ledus.S1G291700.t1"; gene_id "Ledus.S1G291700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2495.t1 is derived from g9358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18476532	18476957	.	-	.	Ledus.S2G237700
Ledus.S2	AUGUSTUS	transcript	18476532	18476957	.	-	.	transcript_id "Ledus.S2G237700.t1"; gene_id "Ledus.S2G237700"
Ledus.S2	AUGUSTUS	stop_codon	18476529	18476531	.	-	0	transcript_id "Ledus.S2G237700.t1"; gene_id "Ledus.S2G237700"
Ledus.S2	AUGUSTUS	CDS	18476532	18476957	1	-	0	transcript_id "Ledus.S2G237700.t1"; gene_id "Ledus.S2G237700"
Ledus.S2	AUGUSTUS	exon	18476532	18476957	.	-	.	transcript_id "Ledus.S2G237700.t1"; gene_id "Ledus.S2G237700"
Ledus.S2	AUGUSTUS	start_codon	18476955	18476957	.	-	0	transcript_id "Ledus.S2G237700.t1"; gene_id "Ledus.S2G237700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9669.t1 is derived from g10699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8955313	8955711	.	+	.	Ledus.S3G114600
Ledus.S3	AUGUSTUS	transcript	8955313	8955711	.	+	.	transcript_id "Ledus.S3G114600.t1"; gene_id "Ledus.S3G114600"
Ledus.S3	AUGUSTUS	start_codon	8955313	8955315	.	+	0	transcript_id "Ledus.S3G114600.t1"; gene_id "Ledus.S3G114600"
Ledus.S3	AUGUSTUS	CDS	8955313	8955711	0.66	+	0	transcript_id "Ledus.S3G114600.t1"; gene_id "Ledus.S3G114600"
Ledus.S3	AUGUSTUS	exon	8955313	8955711	.	+	.	transcript_id "Ledus.S3G114600.t1"; gene_id "Ledus.S3G114600"
Ledus.S3	AUGUSTUS	stop_codon	8955712	8955714	.	+	0	transcript_id "Ledus.S3G114600.t1"; gene_id "Ledus.S3G114600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6188.t1 is derived from g3631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29462698	29464371	.	-	.	Ledus.S1G360900
Ledus.S1	AUGUSTUS	transcript	29462698	29464371	.	-	.	transcript_id "Ledus.S1G360900.t1"; gene_id "Ledus.S1G360900"
Ledus.S1	AUGUSTUS	stop_codon	29462695	29462697	.	-	0	transcript_id "Ledus.S1G360900.t1"; gene_id "Ledus.S1G360900"
Ledus.S1	AUGUSTUS	CDS	29462698	29464371	1	-	0	transcript_id "Ledus.S1G360900.t1"; gene_id "Ledus.S1G360900"
Ledus.S1	AUGUSTUS	exon	29462698	29464371	.	-	.	transcript_id "Ledus.S1G360900.t1"; gene_id "Ledus.S1G360900"
Ledus.S1	AUGUSTUS	start_codon	29464369	29464371	.	-	0	transcript_id "Ledus.S1G360900.t1"; gene_id "Ledus.S1G360900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3452.t1 is derived from g887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8426762	8427484	.	-	.	Ledus.S1G087300
Ledus.S1	AUGUSTUS	transcript	8426762	8427484	.	-	.	transcript_id "Ledus.S1G087300.t1"; gene_id "Ledus.S1G087300"
Ledus.S1	AUGUSTUS	stop_codon	8426759	8426761	.	-	0	transcript_id "Ledus.S1G087300.t1"; gene_id "Ledus.S1G087300"
Ledus.S1	AUGUSTUS	CDS	8426762	8426950	0.92	-	0	transcript_id "Ledus.S1G087300.t1"; gene_id "Ledus.S1G087300"
Ledus.S1	AUGUSTUS	exon	8426762	8426950	.	-	.	transcript_id "Ledus.S1G087300.t1"; gene_id "Ledus.S1G087300"
Ledus.S1	AUGUSTUS	intron	8426951	8427046	.	-	.	transcript_id "Ledus.S1G087300.t1"; gene_id "Ledus.S1G087300"
Ledus.S1	AUGUSTUS	CDS	8427047	8427179	1	-	1	transcript_id "Ledus.S1G087300.t1"; gene_id "Ledus.S1G087300"
Ledus.S1	AUGUSTUS	exon	8427047	8427179	.	-	.	transcript_id "Ledus.S1G087300.t1"; gene_id "Ledus.S1G087300"
Ledus.S1	AUGUSTUS	intron	8427180	8427281	.	-	.	transcript_id "Ledus.S1G087300.t1"; gene_id "Ledus.S1G087300"
Ledus.S1	AUGUSTUS	CDS	8427282	8427484	0.46	-	0	transcript_id "Ledus.S1G087300.t1"; gene_id "Ledus.S1G087300"
Ledus.S1	AUGUSTUS	exon	8427282	8427484	.	-	.	transcript_id "Ledus.S1G087300.t1"; gene_id "Ledus.S1G087300"
Ledus.S1	AUGUSTUS	start_codon	8427482	8427484	.	-	0	transcript_id "Ledus.S1G087300.t1"; gene_id "Ledus.S1G087300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3962.t1 is derived from g1398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13775828	13777086	.	+	.	Ledus.S1G138300
Ledus.S1	AUGUSTUS	transcript	13775828	13777086	.	+	.	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	start_codon	13775828	13775830	.	+	0	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	CDS	13775828	13776114	0.36	+	0	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	exon	13775828	13776114	.	+	.	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	intron	13776115	13776228	.	+	.	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	CDS	13776229	13776407	0.99	+	1	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	exon	13776229	13776407	.	+	.	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	intron	13776408	13776490	.	+	.	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	CDS	13776491	13776552	0.63	+	2	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	exon	13776491	13776552	.	+	.	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	intron	13776553	13776993	.	+	.	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	CDS	13776994	13777086	0.61	+	0	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	exon	13776994	13777086	.	+	.	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
Ledus.S1	AUGUSTUS	stop_codon	13777087	13777089	.	+	0	transcript_id "Ledus.S1G138300.t1"; gene_id "Ledus.S1G138300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10256.t1 is derived from g11286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13844794	13847845	.	-	.	Ledus.S3G173300
Ledus.S3	AUGUSTUS	transcript	13844794	13847845	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	stop_codon	13844791	13844793	.	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13844794	13845012	0.99	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13844794	13845012	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13845013	13845096	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13845097	13845207	1	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13845097	13845207	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13845208	13845315	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13845316	13845444	1	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13845316	13845444	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13845445	13845530	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13845531	13845666	0.92	-	1	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13845531	13845666	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13845667	13845774	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13845775	13845887	1	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13845775	13845887	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13845888	13846001	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13846002	13846074	0.99	-	1	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13846002	13846074	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13846075	13846236	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13846237	13846286	1	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13846237	13846286	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13846287	13846428	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13846429	13846530	1	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13846429	13846530	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13846531	13846717	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13846718	13846849	1	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13846718	13846849	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13846850	13846948	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13846949	13847113	1	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13846949	13847113	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13847114	13847188	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13847189	13847266	1	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13847189	13847266	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13847267	13847342	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13847343	13847421	1	-	1	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13847343	13847421	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13847422	13847485	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13847486	13847546	1	-	2	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13847486	13847546	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13847547	13847640	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13847641	13847677	1	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13847641	13847677	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13847678	13847842	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13847843	13847845	0.92	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13847843	13847845	.	-	.	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	start_codon	13847843	13847845	.	-	0	transcript_id "Ledus.S3G173300.t1"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	transcript	13844794	13847814	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	stop_codon	13844791	13844793	.	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13844794	13845012	0.98	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13844794	13845012	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13845013	13845096	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13845097	13845207	1	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13845097	13845207	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13845208	13845315	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13845316	13845444	1	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13845316	13845444	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13845445	13845530	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13845531	13845666	0.94	-	1	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13845531	13845666	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13845667	13845774	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13845775	13845887	1	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13845775	13845887	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13845888	13846001	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13846002	13846074	1	-	1	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13846002	13846074	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13846075	13846236	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13846237	13846286	1	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13846237	13846286	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13846287	13846428	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13846429	13846530	1	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13846429	13846530	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13846531	13846717	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13846718	13846849	1	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13846718	13846849	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13846850	13846948	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13846949	13847113	1	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13846949	13847113	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13847114	13847188	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13847189	13847266	1	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13847189	13847266	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13847267	13847342	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13847343	13847421	1	-	1	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13847343	13847421	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13847422	13847485	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13847486	13847546	1	-	2	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13847486	13847546	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13847547	13847640	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13847641	13847677	1	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13847641	13847677	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	intron	13847678	13847811	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	CDS	13847812	13847814	0.91	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	exon	13847812	13847814	.	-	.	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
Ledus.S3	AUGUSTUS	start_codon	13847812	13847814	.	-	0	transcript_id "Ledus.S3G173300.t2"; gene_id "Ledus.S3G173300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10352.t1 is derived from g11382.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14365151	14369885	.	-	.	Ledus.S3G182900
Ledus.S3	AUGUSTUS	transcript	14365151	14369885	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	stop_codon	14365148	14365150	.	-	0	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	CDS	14365151	14365893	0.79	-	2	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	exon	14365151	14365893	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	intron	14365894	14366068	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	CDS	14366069	14366138	1	-	0	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	exon	14366069	14366138	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	intron	14366139	14366228	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	CDS	14366229	14366322	1	-	1	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	exon	14366229	14366322	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	intron	14366323	14366454	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	CDS	14366455	14366540	1	-	0	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	exon	14366455	14366540	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	intron	14366541	14366641	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	CDS	14366642	14366710	1	-	0	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	exon	14366642	14366710	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	intron	14366711	14366863	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	CDS	14366864	14366911	1	-	0	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	exon	14366864	14366911	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	intron	14366912	14367052	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	CDS	14367053	14367128	0.98	-	1	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	exon	14367053	14367128	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	intron	14367129	14367243	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	CDS	14367244	14367334	1	-	2	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	exon	14367244	14367334	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	intron	14367335	14367647	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	CDS	14367648	14367696	0.93	-	0	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	exon	14367648	14367696	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	intron	14367697	14368076	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	CDS	14368077	14368508	1	-	0	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	exon	14368077	14368508	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	intron	14368509	14368613	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	CDS	14368614	14369885	0.92	-	0	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	exon	14368614	14369885	.	-	.	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
Ledus.S3	AUGUSTUS	start_codon	14369883	14369885	.	-	0	transcript_id "Ledus.S3G182900.t1"; gene_id "Ledus.S3G182900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6014.t1 is derived from g3457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28337453	28338629	.	-	.	Ledus.S1G343500
Ledus.S1	AUGUSTUS	transcript	28337453	28338629	.	-	.	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	stop_codon	28337450	28337452	.	-	0	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	CDS	28337453	28337554	1	-	0	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	exon	28337453	28337554	.	-	.	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	intron	28337555	28337649	.	-	.	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	CDS	28337650	28337722	1	-	1	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	exon	28337650	28337722	.	-	.	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	intron	28337723	28337819	.	-	.	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	CDS	28337820	28337937	1	-	2	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	exon	28337820	28337937	.	-	.	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	intron	28337938	28338171	.	-	.	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	CDS	28338172	28338268	1	-	0	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	exon	28338172	28338268	.	-	.	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	intron	28338269	28338349	.	-	.	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	CDS	28338350	28338445	1	-	0	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	exon	28338350	28338445	.	-	.	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	intron	28338446	28338545	.	-	.	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	CDS	28338546	28338629	0.28	-	0	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	exon	28338546	28338629	.	-	.	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
Ledus.S1	AUGUSTUS	start_codon	28338627	28338629	.	-	0	transcript_id "Ledus.S1G343500.t1"; gene_id "Ledus.S1G343500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4733.t1 is derived from g2171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19379947	19380174	.	-	.	Ledus.S1G215400
Ledus.S1	AUGUSTUS	transcript	19379947	19380174	.	-	.	transcript_id "Ledus.S1G215400.t1"; gene_id "Ledus.S1G215400"
Ledus.S1	AUGUSTUS	stop_codon	19379944	19379946	.	-	0	transcript_id "Ledus.S1G215400.t1"; gene_id "Ledus.S1G215400"
Ledus.S1	AUGUSTUS	CDS	19379947	19380174	0.43	-	0	transcript_id "Ledus.S1G215400.t1"; gene_id "Ledus.S1G215400"
Ledus.S1	AUGUSTUS	exon	19379947	19380174	.	-	.	transcript_id "Ledus.S1G215400.t1"; gene_id "Ledus.S1G215400"
Ledus.S1	AUGUSTUS	start_codon	19380172	19380174	.	-	0	transcript_id "Ledus.S1G215400.t1"; gene_id "Ledus.S1G215400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg304.t1 is derived from g7165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1516559	1519420	.	-	.	Ledus.S2G018600
Ledus.S2	AUGUSTUS	transcript	1516559	1519420	.	-	.	transcript_id "Ledus.S2G018600.t1"; gene_id "Ledus.S2G018600"
Ledus.S2	AUGUSTUS	stop_codon	1516556	1516558	.	-	0	transcript_id "Ledus.S2G018600.t1"; gene_id "Ledus.S2G018600"
Ledus.S2	AUGUSTUS	CDS	1516559	1516790	0.61	-	1	transcript_id "Ledus.S2G018600.t1"; gene_id "Ledus.S2G018600"
Ledus.S2	AUGUSTUS	exon	1516559	1516790	.	-	.	transcript_id "Ledus.S2G018600.t1"; gene_id "Ledus.S2G018600"
Ledus.S2	AUGUSTUS	intron	1516791	1516866	.	-	.	transcript_id "Ledus.S2G018600.t1"; gene_id "Ledus.S2G018600"
Ledus.S2	AUGUSTUS	CDS	1516867	1517288	1	-	0	transcript_id "Ledus.S2G018600.t1"; gene_id "Ledus.S2G018600"
Ledus.S2	AUGUSTUS	exon	1516867	1517288	.	-	.	transcript_id "Ledus.S2G018600.t1"; gene_id "Ledus.S2G018600"
Ledus.S2	AUGUSTUS	intron	1517289	1517413	.	-	.	transcript_id "Ledus.S2G018600.t1"; gene_id "Ledus.S2G018600"
Ledus.S2	AUGUSTUS	CDS	1517414	1519420	0.97	-	0	transcript_id "Ledus.S2G018600.t1"; gene_id "Ledus.S2G018600"
Ledus.S2	AUGUSTUS	exon	1517414	1519420	.	-	.	transcript_id "Ledus.S2G018600.t1"; gene_id "Ledus.S2G018600"
Ledus.S2	AUGUSTUS	start_codon	1519418	1519420	.	-	0	transcript_id "Ledus.S2G018600.t1"; gene_id "Ledus.S2G018600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1877.t1 is derived from g8740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13144306	13148678	.	-	.	Ledus.S2G175900
Ledus.S2	AUGUSTUS	transcript	13144306	13148678	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	stop_codon	13144303	13144305	.	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13144306	13144425	0.64	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13144306	13144425	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13144426	13144537	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13144538	13144847	0.8	-	1	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13144538	13144847	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13144848	13144939	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13144940	13145151	1	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13144940	13145151	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13145152	13145346	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13145347	13145454	0.88	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13145347	13145454	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13145455	13145585	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13145586	13145696	0.79	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13145586	13145696	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13145697	13145829	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13145830	13145939	0.92	-	2	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13145830	13145939	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13145940	13146018	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13146019	13146155	0.91	-	1	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13146019	13146155	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13146156	13146235	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13146236	13146339	0.87	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13146236	13146339	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13146340	13146529	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13146530	13146727	1	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13146530	13146727	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13146728	13146818	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13146819	13146943	1	-	2	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13146819	13146943	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13146944	13147030	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13147031	13147118	1	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13147031	13147118	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13147119	13147206	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13147207	13147312	1	-	1	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13147207	13147312	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13147313	13147397	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13147398	13147486	0.94	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13147398	13147486	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13147487	13147562	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13147563	13147706	0.95	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13147563	13147706	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13147707	13147783	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13147784	13147876	0.99	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13147784	13147876	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13147877	13147972	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13147973	13148039	1	-	1	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13147973	13148039	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13148040	13148117	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13148118	13148230	0.99	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13148118	13148230	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13148231	13148305	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13148306	13148401	0.99	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13148306	13148401	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	intron	13148402	13148474	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	CDS	13148475	13148678	0.75	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	exon	13148475	13148678	.	-	.	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
Ledus.S2	AUGUSTUS	start_codon	13148676	13148678	.	-	0	transcript_id "Ledus.S2G175900.t1"; gene_id "Ledus.S2G175900"
# This transcript jg4326.t2 is derived from g1762.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4327.t1 is derived from g1763.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16337801	16342093	.	+	.	Ledus.S1G174800
Ledus.S1	AUGUSTUS	transcript	16337801	16339733	.	+	.	transcript_id "Ledus.S1G174800.t1"; gene_id "Ledus.S1G174800"
Ledus.S1	AUGUSTUS	start_codon	16337801	16337803	.	+	0	transcript_id "Ledus.S1G174800.t1"; gene_id "Ledus.S1G174800"
Ledus.S1	AUGUSTUS	CDS	16337801	16339626	0.85	+	0	transcript_id "Ledus.S1G174800.t1"; gene_id "Ledus.S1G174800"
Ledus.S1	AUGUSTUS	exon	16337801	16339626	.	+	.	transcript_id "Ledus.S1G174800.t1"; gene_id "Ledus.S1G174800"
Ledus.S1	AUGUSTUS	intron	16339627	16339711	.	+	.	transcript_id "Ledus.S1G174800.t1"; gene_id "Ledus.S1G174800"
Ledus.S1	AUGUSTUS	CDS	16339712	16339733	0.94	+	1	transcript_id "Ledus.S1G174800.t1"; gene_id "Ledus.S1G174800"
Ledus.S1	AUGUSTUS	exon	16339712	16339733	.	+	.	transcript_id "Ledus.S1G174800.t1"; gene_id "Ledus.S1G174800"
Ledus.S1	AUGUSTUS	stop_codon	16339734	16339736	.	+	0	transcript_id "Ledus.S1G174800.t1"; gene_id "Ledus.S1G174800"
Ledus.S1	AUGUSTUS	transcript	16337801	16342093	.	+	.	transcript_id "Ledus.S1G174800.t2"; gene_id "Ledus.S1G174800"
Ledus.S1	AUGUSTUS	start_codon	16337801	16337803	.	+	0	transcript_id "Ledus.S1G174800.t2"; gene_id "Ledus.S1G174800"
Ledus.S1	AUGUSTUS	CDS	16337801	16342093	0.95	+	0	transcript_id "Ledus.S1G174800.t2"; gene_id "Ledus.S1G174800"
Ledus.S1	AUGUSTUS	exon	16337801	16342093	.	+	.	transcript_id "Ledus.S1G174800.t2"; gene_id "Ledus.S1G174800"
Ledus.S1	AUGUSTUS	stop_codon	16342094	16342096	.	+	0	transcript_id "Ledus.S1G174800.t2"; gene_id "Ledus.S1G174800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1197.t1 is derived from g8058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8517179	8519476	.	+	.	Ledus.S2G107900
Ledus.S2	AUGUSTUS	transcript	8517179	8519476	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	start_codon	8517179	8517181	.	+	0	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	CDS	8517179	8517788	0.5	+	0	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	exon	8517179	8517788	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	intron	8517789	8517902	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	CDS	8517903	8518015	1	+	2	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	exon	8517903	8518015	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	intron	8518016	8518162	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	CDS	8518163	8518270	1	+	0	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	exon	8518163	8518270	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	intron	8518271	8518359	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	CDS	8518360	8518414	1	+	0	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	exon	8518360	8518414	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	intron	8518415	8518565	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	CDS	8518566	8518748	1	+	2	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	exon	8518566	8518748	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	intron	8518749	8518827	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	CDS	8518828	8518925	1	+	2	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	exon	8518828	8518925	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	intron	8518926	8519058	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	CDS	8519059	8519255	1	+	0	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	exon	8519059	8519255	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	intron	8519256	8519376	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	CDS	8519377	8519476	1	+	1	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	exon	8519377	8519476	.	+	.	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
Ledus.S2	AUGUSTUS	stop_codon	8519477	8519479	.	+	0	transcript_id "Ledus.S2G107900.t1"; gene_id "Ledus.S2G107900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg291.t1 is derived from g7152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1438033	1438302	.	-	.	Ledus.S2G017300
Ledus.S2	AUGUSTUS	transcript	1438033	1438302	.	-	.	transcript_id "Ledus.S2G017300.t1"; gene_id "Ledus.S2G017300"
Ledus.S2	AUGUSTUS	stop_codon	1438030	1438032	.	-	0	transcript_id "Ledus.S2G017300.t1"; gene_id "Ledus.S2G017300"
Ledus.S2	AUGUSTUS	CDS	1438033	1438302	0.62	-	0	transcript_id "Ledus.S2G017300.t1"; gene_id "Ledus.S2G017300"
Ledus.S2	AUGUSTUS	exon	1438033	1438302	.	-	.	transcript_id "Ledus.S2G017300.t1"; gene_id "Ledus.S2G017300"
Ledus.S2	AUGUSTUS	start_codon	1438300	1438302	.	-	0	transcript_id "Ledus.S2G017300.t1"; gene_id "Ledus.S2G017300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5810.t1 is derived from g3252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27057015	27058553	.	-	.	Ledus.S1G323100
Ledus.S1	AUGUSTUS	transcript	27057015	27058553	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	stop_codon	27057012	27057014	.	-	0	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	CDS	27057015	27057139	1	-	2	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	exon	27057015	27057139	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	intron	27057140	27057256	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	CDS	27057257	27057357	1	-	1	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	exon	27057257	27057357	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	intron	27057358	27057432	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	CDS	27057433	27057536	1	-	0	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	exon	27057433	27057536	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	intron	27057537	27057635	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	CDS	27057636	27057770	1	-	0	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	exon	27057636	27057770	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	intron	27057771	27057924	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	CDS	27057925	27058031	1	-	2	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	exon	27057925	27058031	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	intron	27058032	27058181	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	CDS	27058182	27058311	1	-	0	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	exon	27058182	27058311	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	intron	27058312	27058430	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	CDS	27058431	27058553	0.98	-	0	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	exon	27058431	27058553	.	-	.	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
Ledus.S1	AUGUSTUS	start_codon	27058551	27058553	.	-	0	transcript_id "Ledus.S1G323100.t1"; gene_id "Ledus.S1G323100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5367.t1 is derived from g2806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23767407	23767968	.	-	.	Ledus.S1G278800
Ledus.S1	AUGUSTUS	transcript	23767407	23767968	.	-	.	transcript_id "Ledus.S1G278800.t1"; gene_id "Ledus.S1G278800"
Ledus.S1	AUGUSTUS	stop_codon	23767404	23767406	.	-	0	transcript_id "Ledus.S1G278800.t1"; gene_id "Ledus.S1G278800"
Ledus.S1	AUGUSTUS	CDS	23767407	23767719	0.49	-	1	transcript_id "Ledus.S1G278800.t1"; gene_id "Ledus.S1G278800"
Ledus.S1	AUGUSTUS	exon	23767407	23767719	.	-	.	transcript_id "Ledus.S1G278800.t1"; gene_id "Ledus.S1G278800"
Ledus.S1	AUGUSTUS	intron	23767720	23767816	.	-	.	transcript_id "Ledus.S1G278800.t1"; gene_id "Ledus.S1G278800"
Ledus.S1	AUGUSTUS	CDS	23767817	23767968	0.44	-	0	transcript_id "Ledus.S1G278800.t1"; gene_id "Ledus.S1G278800"
Ledus.S1	AUGUSTUS	exon	23767817	23767968	.	-	.	transcript_id "Ledus.S1G278800.t1"; gene_id "Ledus.S1G278800"
Ledus.S1	AUGUSTUS	start_codon	23767966	23767968	.	-	0	transcript_id "Ledus.S1G278800.t1"; gene_id "Ledus.S1G278800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4665.t1 is derived from g2103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18832479	18832844	.	-	.	Ledus.S1G208600
Ledus.S1	AUGUSTUS	transcript	18832479	18832844	.	-	.	transcript_id "Ledus.S1G208600.t1"; gene_id "Ledus.S1G208600"
Ledus.S1	AUGUSTUS	stop_codon	18832476	18832478	.	-	0	transcript_id "Ledus.S1G208600.t1"; gene_id "Ledus.S1G208600"
Ledus.S1	AUGUSTUS	CDS	18832479	18832657	1	-	2	transcript_id "Ledus.S1G208600.t1"; gene_id "Ledus.S1G208600"
Ledus.S1	AUGUSTUS	exon	18832479	18832657	.	-	.	transcript_id "Ledus.S1G208600.t1"; gene_id "Ledus.S1G208600"
Ledus.S1	AUGUSTUS	intron	18832658	18832750	.	-	.	transcript_id "Ledus.S1G208600.t1"; gene_id "Ledus.S1G208600"
Ledus.S1	AUGUSTUS	CDS	18832751	18832844	0.88	-	0	transcript_id "Ledus.S1G208600.t1"; gene_id "Ledus.S1G208600"
Ledus.S1	AUGUSTUS	exon	18832751	18832844	.	-	.	transcript_id "Ledus.S1G208600.t1"; gene_id "Ledus.S1G208600"
Ledus.S1	AUGUSTUS	start_codon	18832842	18832844	.	-	0	transcript_id "Ledus.S1G208600.t1"; gene_id "Ledus.S1G208600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11134.t1 is derived from g4752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2112594	2113272	.	-	.	Ledus.S4G029000
Ledus.S4	AUGUSTUS	transcript	2112594	2113272	.	-	.	transcript_id "Ledus.S4G029000.t1"; gene_id "Ledus.S4G029000"
Ledus.S4	AUGUSTUS	stop_codon	2112591	2112593	.	-	0	transcript_id "Ledus.S4G029000.t1"; gene_id "Ledus.S4G029000"
Ledus.S4	AUGUSTUS	CDS	2112594	2112709	0.4	-	2	transcript_id "Ledus.S4G029000.t1"; gene_id "Ledus.S4G029000"
Ledus.S4	AUGUSTUS	exon	2112594	2112709	.	-	.	transcript_id "Ledus.S4G029000.t1"; gene_id "Ledus.S4G029000"
Ledus.S4	AUGUSTUS	intron	2112710	2112902	.	-	.	transcript_id "Ledus.S4G029000.t1"; gene_id "Ledus.S4G029000"
Ledus.S4	AUGUSTUS	CDS	2112903	2113272	0.51	-	0	transcript_id "Ledus.S4G029000.t1"; gene_id "Ledus.S4G029000"
Ledus.S4	AUGUSTUS	exon	2112903	2113272	.	-	.	transcript_id "Ledus.S4G029000.t1"; gene_id "Ledus.S4G029000"
Ledus.S4	AUGUSTUS	start_codon	2113270	2113272	.	-	0	transcript_id "Ledus.S4G029000.t1"; gene_id "Ledus.S4G029000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7217.t1 is derived from g6748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2282372	2283922	.	-	.	Ledus.C7G027800
Ledus.C7	AUGUSTUS	transcript	2282372	2283922	.	-	.	transcript_id "Ledus.C7G027800.t1"; gene_id "Ledus.C7G027800"
Ledus.C7	AUGUSTUS	stop_codon	2282369	2282371	.	-	0	transcript_id "Ledus.C7G027800.t1"; gene_id "Ledus.C7G027800"
Ledus.C7	AUGUSTUS	CDS	2282372	2283922	0.91	-	0	transcript_id "Ledus.C7G027800.t1"; gene_id "Ledus.C7G027800"
Ledus.C7	AUGUSTUS	exon	2282372	2283922	.	-	.	transcript_id "Ledus.C7G027800.t1"; gene_id "Ledus.C7G027800"
Ledus.C7	AUGUSTUS	start_codon	2283920	2283922	.	-	0	transcript_id "Ledus.C7G027800.t1"; gene_id "Ledus.C7G027800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6304.t1 is derived from g3747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30392650	30392949	.	+	.	Ledus.S1G372500
Ledus.S1	AUGUSTUS	transcript	30392650	30392949	.	+	.	transcript_id "Ledus.S1G372500.t1"; gene_id "Ledus.S1G372500"
Ledus.S1	AUGUSTUS	start_codon	30392650	30392652	.	+	0	transcript_id "Ledus.S1G372500.t1"; gene_id "Ledus.S1G372500"
Ledus.S1	AUGUSTUS	CDS	30392650	30392949	0.91	+	0	transcript_id "Ledus.S1G372500.t1"; gene_id "Ledus.S1G372500"
Ledus.S1	AUGUSTUS	exon	30392650	30392949	.	+	.	transcript_id "Ledus.S1G372500.t1"; gene_id "Ledus.S1G372500"
Ledus.S1	AUGUSTUS	stop_codon	30392950	30392952	.	+	0	transcript_id "Ledus.S1G372500.t1"; gene_id "Ledus.S1G372500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9577.t1 is derived from g10607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7892393	7893552	.	-	.	Ledus.S3G105400
Ledus.S3	AUGUSTUS	transcript	7892393	7893552	.	-	.	transcript_id "Ledus.S3G105400.t1"; gene_id "Ledus.S3G105400"
Ledus.S3	AUGUSTUS	stop_codon	7892390	7892392	.	-	0	transcript_id "Ledus.S3G105400.t1"; gene_id "Ledus.S3G105400"
Ledus.S3	AUGUSTUS	CDS	7892393	7892707	0.58	-	0	transcript_id "Ledus.S3G105400.t1"; gene_id "Ledus.S3G105400"
Ledus.S3	AUGUSTUS	exon	7892393	7892707	.	-	.	transcript_id "Ledus.S3G105400.t1"; gene_id "Ledus.S3G105400"
Ledus.S3	AUGUSTUS	intron	7892708	7893315	.	-	.	transcript_id "Ledus.S3G105400.t1"; gene_id "Ledus.S3G105400"
Ledus.S3	AUGUSTUS	CDS	7893316	7893552	0.45	-	0	transcript_id "Ledus.S3G105400.t1"; gene_id "Ledus.S3G105400"
Ledus.S3	AUGUSTUS	exon	7893316	7893552	.	-	.	transcript_id "Ledus.S3G105400.t1"; gene_id "Ledus.S3G105400"
Ledus.S3	AUGUSTUS	start_codon	7893550	7893552	.	-	0	transcript_id "Ledus.S3G105400.t1"; gene_id "Ledus.S3G105400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg221.t1 is derived from g7082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	961323	965725	.	-	.	Ledus.S2G010300
Ledus.S2	AUGUSTUS	transcript	961323	965725	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	stop_codon	961320	961322	.	-	0	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	961323	961490	0.83	-	0	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	961323	961490	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	961491	961590	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	961591	961867	1	-	1	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	961591	961867	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	961868	962025	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	962026	962057	1	-	0	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	962026	962057	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	962058	962176	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	962177	962392	0.95	-	0	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	962177	962392	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	962393	962500	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	962501	962743	0.97	-	0	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	962501	962743	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	962744	962847	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	962848	962985	0.99	-	0	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	962848	962985	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	962986	963083	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	963084	963632	1	-	0	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	963084	963632	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	963633	963711	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	963712	963888	1	-	0	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	963712	963888	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	963889	964169	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	964170	965311	1	-	2	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	964170	965311	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	965312	965571	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	965572	965725	0.63	-	0	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	965572	965725	.	-	.	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	start_codon	965723	965725	.	-	0	transcript_id "Ledus.S2G010300.t1"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	transcript	961323	965434	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	stop_codon	961320	961322	.	-	0	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	961323	961490	0.87	-	0	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	961323	961490	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	961491	961590	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	961591	961867	1	-	1	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	961591	961867	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	961868	962025	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	962026	962057	1	-	0	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	962026	962057	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	962058	962176	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	962177	962392	0.95	-	0	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	962177	962392	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	962393	962500	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	962501	962743	0.95	-	0	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	962501	962743	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	962744	962847	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	962848	962985	1	-	0	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	962848	962985	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	962986	963083	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	963084	963632	0.99	-	0	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	963084	963632	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	963633	963711	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	963712	963888	0.88	-	0	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	963712	963888	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	963889	963955	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	963956	963961	0.87	-	0	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	963956	963961	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	963962	964169	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	964170	965311	1	-	2	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	964170	965311	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	intron	965312	965406	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	CDS	965407	965434	0.76	-	0	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	exon	965407	965434	.	-	.	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
Ledus.S2	AUGUSTUS	start_codon	965432	965434	.	-	0	transcript_id "Ledus.S2G010300.t2"; gene_id "Ledus.S2G010300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12794.t1 is derived from g6416.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14605914	14606138	.	-	.	Ledus.S4G195000
Ledus.S4	AUGUSTUS	transcript	14605914	14606138	.	-	.	transcript_id "Ledus.S4G195000.t1"; gene_id "Ledus.S4G195000"
Ledus.S4	AUGUSTUS	stop_codon	14605911	14605913	.	-	0	transcript_id "Ledus.S4G195000.t1"; gene_id "Ledus.S4G195000"
Ledus.S4	AUGUSTUS	CDS	14605914	14606138	1	-	0	transcript_id "Ledus.S4G195000.t1"; gene_id "Ledus.S4G195000"
Ledus.S4	AUGUSTUS	exon	14605914	14606138	.	-	.	transcript_id "Ledus.S4G195000.t1"; gene_id "Ledus.S4G195000"
Ledus.S4	AUGUSTUS	start_codon	14606136	14606138	.	-	0	transcript_id "Ledus.S4G195000.t1"; gene_id "Ledus.S4G195000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2022.t1 is derived from g8885.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14218177	14218972	.	+	.	Ledus.S2G190400
Ledus.S2	AUGUSTUS	transcript	14218177	14218972	.	+	.	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	start_codon	14218177	14218179	.	+	0	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	CDS	14218177	14218260	0.65	+	0	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	exon	14218177	14218260	.	+	.	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	intron	14218261	14218417	.	+	.	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	CDS	14218418	14218465	0.72	+	0	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	exon	14218418	14218465	.	+	.	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	intron	14218466	14218538	.	+	.	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	CDS	14218539	14218592	1	+	0	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	exon	14218539	14218592	.	+	.	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	intron	14218593	14218673	.	+	.	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	CDS	14218674	14218757	1	+	0	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	exon	14218674	14218757	.	+	.	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	intron	14218758	14218849	.	+	.	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	CDS	14218850	14218972	0.95	+	0	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	exon	14218850	14218972	.	+	.	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	stop_codon	14218973	14218975	.	+	0	transcript_id "Ledus.S2G190400.t1"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	transcript	14218177	14218972	.	+	.	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	start_codon	14218177	14218179	.	+	0	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	CDS	14218177	14218260	0.71	+	0	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	exon	14218177	14218260	.	+	.	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	intron	14218261	14218417	.	+	.	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	CDS	14218418	14218465	0.77	+	0	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	exon	14218418	14218465	.	+	.	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	intron	14218466	14218538	.	+	.	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	CDS	14218539	14218592	0.74	+	0	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	exon	14218539	14218592	.	+	.	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	intron	14218593	14218688	.	+	.	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	CDS	14218689	14218757	0.66	+	0	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	exon	14218689	14218757	.	+	.	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	intron	14218758	14218849	.	+	.	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	CDS	14218850	14218972	0.95	+	0	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	exon	14218850	14218972	.	+	.	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
Ledus.S2	AUGUSTUS	stop_codon	14218973	14218975	.	+	0	transcript_id "Ledus.S2G190400.t2"; gene_id "Ledus.S2G190400"
# This transcript jg11317.t2 is derived from g4935.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11318.t1 is derived from g4936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3556316	3560084	.	-	.	Ledus.S4G047400
Ledus.S4	AUGUSTUS	transcript	3556316	3560084	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	stop_codon	3556313	3556315	.	-	0	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	CDS	3556316	3556735	0.92	-	0	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	exon	3556316	3556735	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	intron	3556736	3556820	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	CDS	3556821	3556951	1	-	2	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	exon	3556821	3556951	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	intron	3556952	3557022	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	CDS	3557023	3557149	1	-	0	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	exon	3557023	3557149	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	intron	3557150	3557238	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	CDS	3557239	3557355	1	-	0	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	exon	3557239	3557355	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	intron	3557356	3557445	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	CDS	3557446	3557551	1	-	1	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	exon	3557446	3557551	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	intron	3557552	3557648	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	CDS	3557649	3557704	1	-	0	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	exon	3557649	3557704	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	intron	3557705	3557799	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	CDS	3557800	3557934	1	-	0	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	exon	3557800	3557934	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	intron	3557935	3558019	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	CDS	3558020	3558124	0.99	-	0	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	exon	3558020	3558124	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	intron	3558125	3558245	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	CDS	3558246	3558362	0.98	-	0	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	exon	3558246	3558362	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	intron	3558363	3558456	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	CDS	3558457	3558633	1	-	0	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	exon	3558457	3558633	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	intron	3558634	3558709	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	CDS	3558710	3559737	1	-	2	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	exon	3558710	3559737	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	intron	3559738	3559816	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	CDS	3559817	3560084	1	-	0	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	exon	3559817	3560084	.	-	.	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
Ledus.S4	AUGUSTUS	start_codon	3560082	3560084	.	-	0	transcript_id "Ledus.S4G047400.t1"; gene_id "Ledus.S4G047400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9665.t1 is derived from g10695.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8873343	8875775	.	+	.	Ledus.S3G114200
Ledus.S3	AUGUSTUS	transcript	8873343	8875775	.	+	.	transcript_id "Ledus.S3G114200.t1"; gene_id "Ledus.S3G114200"
Ledus.S3	AUGUSTUS	start_codon	8873343	8873345	.	+	0	transcript_id "Ledus.S3G114200.t1"; gene_id "Ledus.S3G114200"
Ledus.S3	AUGUSTUS	CDS	8873343	8875775	1	+	0	transcript_id "Ledus.S3G114200.t1"; gene_id "Ledus.S3G114200"
Ledus.S3	AUGUSTUS	exon	8873343	8875775	.	+	.	transcript_id "Ledus.S3G114200.t1"; gene_id "Ledus.S3G114200"
Ledus.S3	AUGUSTUS	stop_codon	8875776	8875778	.	+	0	transcript_id "Ledus.S3G114200.t1"; gene_id "Ledus.S3G114200"
# This transcript jg4327.t2 is derived from g1763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4328.t1 is derived from g1764.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16342118	16343499	.	+	.	Ledus.S1G174900
Ledus.S1	AUGUSTUS	transcript	16342118	16342915	.	+	.	transcript_id "Ledus.S1G174900.t1"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	start_codon	16342118	16342120	.	+	0	transcript_id "Ledus.S1G174900.t1"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	CDS	16342118	16342216	0.54	+	0	transcript_id "Ledus.S1G174900.t1"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	exon	16342118	16342216	.	+	.	transcript_id "Ledus.S1G174900.t1"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	intron	16342217	16342453	.	+	.	transcript_id "Ledus.S1G174900.t1"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	CDS	16342454	16342824	0.85	+	0	transcript_id "Ledus.S1G174900.t1"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	exon	16342454	16342824	.	+	.	transcript_id "Ledus.S1G174900.t1"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	intron	16342825	16342914	.	+	.	transcript_id "Ledus.S1G174900.t1"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	CDS	16342915	16342915	0.99	+	1	transcript_id "Ledus.S1G174900.t1"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	exon	16342915	16342915	.	+	.	transcript_id "Ledus.S1G174900.t1"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	stop_codon	16342916	16342918	.	+	0	transcript_id "Ledus.S1G174900.t1"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	transcript	16342118	16343499	.	+	.	transcript_id "Ledus.S1G174900.t2"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	start_codon	16342118	16342120	.	+	0	transcript_id "Ledus.S1G174900.t2"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	CDS	16342118	16342216	0.6	+	0	transcript_id "Ledus.S1G174900.t2"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	exon	16342118	16342216	.	+	.	transcript_id "Ledus.S1G174900.t2"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	intron	16342217	16342453	.	+	.	transcript_id "Ledus.S1G174900.t2"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	CDS	16342454	16342816	0.92	+	0	transcript_id "Ledus.S1G174900.t2"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	exon	16342454	16342816	.	+	.	transcript_id "Ledus.S1G174900.t2"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	intron	16342817	16342914	.	+	.	transcript_id "Ledus.S1G174900.t2"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	CDS	16342915	16343499	0.78	+	0	transcript_id "Ledus.S1G174900.t2"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	exon	16342915	16343499	.	+	.	transcript_id "Ledus.S1G174900.t2"; gene_id "Ledus.S1G174900"
Ledus.S1	AUGUSTUS	stop_codon	16343500	16343502	.	+	0	transcript_id "Ledus.S1G174900.t2"; gene_id "Ledus.S1G174900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg893.t1 is derived from g7754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5996351	5998836	.	-	.	Ledus.S2G077500
Ledus.S2	AUGUSTUS	transcript	5997474	5998836	.	-	.	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	stop_codon	5997471	5997473	.	-	0	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5997474	5997482	0.8	-	0	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5997474	5997482	.	-	.	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5997483	5997572	.	-	.	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5997573	5997714	0.9	-	1	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5997573	5997714	.	-	.	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5997715	5997874	.	-	.	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5997875	5997943	0.98	-	1	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5997875	5997943	.	-	.	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5997944	5998053	.	-	.	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5998054	5998396	0.98	-	2	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5998054	5998396	.	-	.	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5998397	5998527	.	-	.	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5998528	5998590	0.47	-	2	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5998528	5998590	.	-	.	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5998591	5998721	.	-	.	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5998722	5998836	0.51	-	0	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5998722	5998836	.	-	.	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	start_codon	5998834	5998836	.	-	0	transcript_id "Ledus.S2G077500.t1"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	transcript	5996351	5998836	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	stop_codon	5996348	5996350	.	-	0	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5996351	5996428	1	-	0	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5996351	5996428	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5996429	5996610	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5996611	5996678	0.4	-	2	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5996611	5996678	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5996679	5996786	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5996787	5996929	0.34	-	1	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5996787	5996929	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5996930	5997060	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5997061	5997083	0.98	-	0	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5997061	5997083	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5997084	5997572	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5997573	5997714	1	-	1	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5997573	5997714	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5997715	5997874	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5997875	5997943	1	-	1	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5997875	5997943	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5997944	5998053	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5998054	5998396	0.99	-	2	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5998054	5998396	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5998397	5998527	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5998528	5998590	0.45	-	2	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5998528	5998590	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	intron	5998591	5998721	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	CDS	5998722	5998836	0.51	-	0	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	exon	5998722	5998836	.	-	.	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
Ledus.S2	AUGUSTUS	start_codon	5998834	5998836	.	-	0	transcript_id "Ledus.S2G077500.t2"; gene_id "Ledus.S2G077500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8527.t1 is derived from g9557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	39700	40703	.	-	.	Ledus.S3G000400
Ledus.S3	AUGUSTUS	transcript	39700	40703	.	-	.	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	stop_codon	39697	39699	.	-	0	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	CDS	39700	40056	1	-	0	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	exon	39700	40056	.	-	.	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	intron	40057	40149	.	-	.	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	CDS	40150	40341	1	-	0	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	exon	40150	40341	.	-	.	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	intron	40342	40436	.	-	.	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	CDS	40437	40560	1	-	1	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	exon	40437	40560	.	-	.	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	intron	40561	40644	.	-	.	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	CDS	40645	40703	0.59	-	0	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	exon	40645	40703	.	-	.	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
Ledus.S3	AUGUSTUS	start_codon	40701	40703	.	-	0	transcript_id "Ledus.S3G000400.t1"; gene_id "Ledus.S3G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4449.t1 is derived from g1885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17162981	17163942	.	-	.	Ledus.S1G187000
Ledus.S1	AUGUSTUS	transcript	17162981	17163942	.	-	.	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	stop_codon	17162978	17162980	.	-	0	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	CDS	17162981	17163074	0.75	-	1	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	exon	17162981	17163074	.	-	.	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	intron	17163075	17163337	.	-	.	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	CDS	17163338	17163446	0.73	-	2	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	exon	17163338	17163446	.	-	.	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	intron	17163447	17163706	.	-	.	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	CDS	17163707	17163783	0.45	-	1	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	exon	17163707	17163783	.	-	.	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	intron	17163784	17163877	.	-	.	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	CDS	17163878	17163942	0.39	-	0	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	exon	17163878	17163942	.	-	.	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
Ledus.S1	AUGUSTUS	start_codon	17163940	17163942	.	-	0	transcript_id "Ledus.S1G187000.t1"; gene_id "Ledus.S1G187000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12131.t1 is derived from g5750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9681679	9685094	.	+	.	Ledus.S4G128700
Ledus.S4	AUGUSTUS	transcript	9681679	9685094	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	start_codon	9681679	9681681	.	+	0	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	CDS	9681679	9681837	0.61	+	0	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	exon	9681679	9681837	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	intron	9681838	9681920	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	CDS	9681921	9682012	0.86	+	0	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	exon	9681921	9682012	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	intron	9682013	9682087	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	CDS	9682088	9682185	0.86	+	1	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	exon	9682088	9682185	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	intron	9682186	9682271	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	CDS	9682272	9682430	1	+	2	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	exon	9682272	9682430	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	intron	9682431	9682512	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	CDS	9682513	9682627	0.89	+	2	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	exon	9682513	9682627	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	intron	9682628	9682731	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	CDS	9682732	9682948	0.89	+	1	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	exon	9682732	9682948	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	intron	9682949	9683031	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	CDS	9683032	9683343	1	+	0	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	exon	9683032	9683343	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	intron	9683344	9683429	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	CDS	9683430	9683533	1	+	0	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	exon	9683430	9683533	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	intron	9683534	9683640	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	CDS	9683641	9683877	0.96	+	1	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	exon	9683641	9683877	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	intron	9683878	9683969	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	CDS	9683970	9684087	1	+	1	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	exon	9683970	9684087	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	intron	9684088	9684183	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	CDS	9684184	9684397	1	+	0	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	exon	9684184	9684397	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	intron	9684398	9684513	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	CDS	9684514	9685094	0.85	+	2	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	exon	9684514	9685094	.	+	.	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
Ledus.S4	AUGUSTUS	stop_codon	9685095	9685097	.	+	0	transcript_id "Ledus.S4G128700.t1"; gene_id "Ledus.S4G128700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2098.t1 is derived from g8961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14714278	14715821	.	+	.	Ledus.S2G198000
Ledus.S2	AUGUSTUS	transcript	14714278	14715821	.	+	.	transcript_id "Ledus.S2G198000.t1"; gene_id "Ledus.S2G198000"
Ledus.S2	AUGUSTUS	start_codon	14714278	14714280	.	+	0	transcript_id "Ledus.S2G198000.t1"; gene_id "Ledus.S2G198000"
Ledus.S2	AUGUSTUS	CDS	14714278	14714493	0.6	+	0	transcript_id "Ledus.S2G198000.t1"; gene_id "Ledus.S2G198000"
Ledus.S2	AUGUSTUS	exon	14714278	14714493	.	+	.	transcript_id "Ledus.S2G198000.t1"; gene_id "Ledus.S2G198000"
Ledus.S2	AUGUSTUS	intron	14714494	14714583	.	+	.	transcript_id "Ledus.S2G198000.t1"; gene_id "Ledus.S2G198000"
Ledus.S2	AUGUSTUS	CDS	14714584	14714830	0.96	+	0	transcript_id "Ledus.S2G198000.t1"; gene_id "Ledus.S2G198000"
Ledus.S2	AUGUSTUS	exon	14714584	14714830	.	+	.	transcript_id "Ledus.S2G198000.t1"; gene_id "Ledus.S2G198000"
Ledus.S2	AUGUSTUS	intron	14714831	14715189	.	+	.	transcript_id "Ledus.S2G198000.t1"; gene_id "Ledus.S2G198000"
Ledus.S2	AUGUSTUS	CDS	14715190	14715821	1	+	2	transcript_id "Ledus.S2G198000.t1"; gene_id "Ledus.S2G198000"
Ledus.S2	AUGUSTUS	exon	14715190	14715821	.	+	.	transcript_id "Ledus.S2G198000.t1"; gene_id "Ledus.S2G198000"
Ledus.S2	AUGUSTUS	stop_codon	14715822	14715824	.	+	0	transcript_id "Ledus.S2G198000.t1"; gene_id "Ledus.S2G198000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12483.t1 is derived from g6104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12312785	12313897	.	+	.	Ledus.S4G163900
Ledus.S4	AUGUSTUS	transcript	12312785	12313897	.	+	.	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	start_codon	12312785	12312787	.	+	0	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	CDS	12312785	12312847	1	+	0	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	exon	12312785	12312847	.	+	.	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	intron	12312848	12313022	.	+	.	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	CDS	12313023	12313105	1	+	0	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	exon	12313023	12313105	.	+	.	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	intron	12313106	12313210	.	+	.	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	CDS	12313211	12313360	1	+	1	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	exon	12313211	12313360	.	+	.	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	intron	12313361	12313439	.	+	.	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	CDS	12313440	12313542	1	+	1	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	exon	12313440	12313542	.	+	.	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	intron	12313543	12313634	.	+	.	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	CDS	12313635	12313697	0.98	+	0	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	exon	12313635	12313697	.	+	.	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	intron	12313698	12313822	.	+	.	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	CDS	12313823	12313897	0.7	+	0	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	exon	12313823	12313897	.	+	.	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
Ledus.S4	AUGUSTUS	stop_codon	12313898	12313900	.	+	0	transcript_id "Ledus.S4G163900.t1"; gene_id "Ledus.S4G163900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5939.t1 is derived from g3382.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27934526	27936092	.	+	.	Ledus.S1G336000
Ledus.S1	AUGUSTUS	transcript	27934526	27936092	.	+	.	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	start_codon	27934526	27934528	.	+	0	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	CDS	27934526	27935200	0.99	+	0	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	exon	27934526	27935200	.	+	.	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	intron	27935201	27935291	.	+	.	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	CDS	27935292	27935540	1	+	0	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	exon	27935292	27935540	.	+	.	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	intron	27935541	27935625	.	+	.	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	CDS	27935626	27935748	0.95	+	0	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	exon	27935626	27935748	.	+	.	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	intron	27935749	27935834	.	+	.	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	CDS	27935835	27936092	1	+	0	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	exon	27935835	27936092	.	+	.	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
Ledus.S1	AUGUSTUS	stop_codon	27936093	27936095	.	+	0	transcript_id "Ledus.S1G336000.t1"; gene_id "Ledus.S1G336000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8285.t1 is derived from g12956.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10432173	10433252	.	-	.	Ledus.S5G106300
Ledus.S5	AUGUSTUS	transcript	10432173	10433252	.	-	.	transcript_id "Ledus.S5G106300.t1"; gene_id "Ledus.S5G106300"
Ledus.S5	AUGUSTUS	stop_codon	10432170	10432172	.	-	0	transcript_id "Ledus.S5G106300.t1"; gene_id "Ledus.S5G106300"
Ledus.S5	AUGUSTUS	CDS	10432173	10433252	0.96	-	0	transcript_id "Ledus.S5G106300.t1"; gene_id "Ledus.S5G106300"
Ledus.S5	AUGUSTUS	exon	10432173	10433252	.	-	.	transcript_id "Ledus.S5G106300.t1"; gene_id "Ledus.S5G106300"
Ledus.S5	AUGUSTUS	start_codon	10433250	10433252	.	-	0	transcript_id "Ledus.S5G106300.t1"; gene_id "Ledus.S5G106300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7516.t1 is derived from g12187.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3550725	3551248	.	-	.	Ledus.S5G029400
Ledus.S5	AUGUSTUS	transcript	3550725	3551248	.	-	.	transcript_id "Ledus.S5G029400.t1"; gene_id "Ledus.S5G029400"
Ledus.S5	AUGUSTUS	stop_codon	3550722	3550724	.	-	0	transcript_id "Ledus.S5G029400.t1"; gene_id "Ledus.S5G029400"
Ledus.S5	AUGUSTUS	CDS	3550725	3550868	1	-	0	transcript_id "Ledus.S5G029400.t1"; gene_id "Ledus.S5G029400"
Ledus.S5	AUGUSTUS	exon	3550725	3550868	.	-	.	transcript_id "Ledus.S5G029400.t1"; gene_id "Ledus.S5G029400"
Ledus.S5	AUGUSTUS	intron	3550869	3550950	.	-	.	transcript_id "Ledus.S5G029400.t1"; gene_id "Ledus.S5G029400"
Ledus.S5	AUGUSTUS	CDS	3550951	3551092	1	-	1	transcript_id "Ledus.S5G029400.t1"; gene_id "Ledus.S5G029400"
Ledus.S5	AUGUSTUS	exon	3550951	3551092	.	-	.	transcript_id "Ledus.S5G029400.t1"; gene_id "Ledus.S5G029400"
Ledus.S5	AUGUSTUS	intron	3551093	3551174	.	-	.	transcript_id "Ledus.S5G029400.t1"; gene_id "Ledus.S5G029400"
Ledus.S5	AUGUSTUS	CDS	3551175	3551248	1	-	0	transcript_id "Ledus.S5G029400.t1"; gene_id "Ledus.S5G029400"
Ledus.S5	AUGUSTUS	exon	3551175	3551248	.	-	.	transcript_id "Ledus.S5G029400.t1"; gene_id "Ledus.S5G029400"
Ledus.S5	AUGUSTUS	start_codon	3551246	3551248	.	-	0	transcript_id "Ledus.S5G029400.t1"; gene_id "Ledus.S5G029400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13174.t1 is derived from g9448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C41	AUGUSTUS	gene	16181	16809	.	+	.	Ledus.C41G000500
Ledus.C41	AUGUSTUS	transcript	16181	16809	.	+	.	transcript_id "Ledus.C41G000500.t1"; gene_id "Ledus.C41G000500"
Ledus.C41	AUGUSTUS	start_codon	16181	16183	.	+	0	transcript_id "Ledus.C41G000500.t1"; gene_id "Ledus.C41G000500"
Ledus.C41	AUGUSTUS	CDS	16181	16645	0.66	+	0	transcript_id "Ledus.C41G000500.t1"; gene_id "Ledus.C41G000500"
Ledus.C41	AUGUSTUS	exon	16181	16645	.	+	.	transcript_id "Ledus.C41G000500.t1"; gene_id "Ledus.C41G000500"
Ledus.C41	AUGUSTUS	intron	16646	16728	.	+	.	transcript_id "Ledus.C41G000500.t1"; gene_id "Ledus.C41G000500"
Ledus.C41	AUGUSTUS	CDS	16729	16809	0.58	+	0	transcript_id "Ledus.C41G000500.t1"; gene_id "Ledus.C41G000500"
Ledus.C41	AUGUSTUS	exon	16729	16809	.	+	.	transcript_id "Ledus.C41G000500.t1"; gene_id "Ledus.C41G000500"
Ledus.C41	AUGUSTUS	stop_codon	16810	16812	.	+	0	transcript_id "Ledus.C41G000500.t1"; gene_id "Ledus.C41G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7099.t1 is derived from g6630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1538031	1539565	.	-	.	Ledus.C7G016000
Ledus.C7	AUGUSTUS	transcript	1538031	1539565	.	-	.	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	stop_codon	1538028	1538030	.	-	0	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	CDS	1538031	1538041	1	-	2	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	exon	1538031	1538041	.	-	.	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	intron	1538042	1538184	.	-	.	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	CDS	1538185	1538367	1	-	2	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	exon	1538185	1538367	.	-	.	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	intron	1538368	1538452	.	-	.	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	CDS	1538453	1538558	1	-	0	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	exon	1538453	1538558	.	-	.	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	intron	1538559	1538693	.	-	.	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	CDS	1538694	1538785	0.41	-	2	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	exon	1538694	1538785	.	-	.	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	intron	1538786	1539108	.	-	.	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	CDS	1539109	1539565	0.35	-	0	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	exon	1539109	1539565	.	-	.	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
Ledus.C7	AUGUSTUS	start_codon	1539563	1539565	.	-	0	transcript_id "Ledus.C7G016000.t1"; gene_id "Ledus.C7G016000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7044.t1 is derived from g6575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	999430	1005216	.	-	.	Ledus.C7G010500
Ledus.C7	AUGUSTUS	transcript	999430	1005216	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	stop_codon	999427	999429	.	-	0	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	CDS	999430	999498	1	-	0	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	exon	999430	999498	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	intron	999499	999718	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	CDS	999719	999859	1	-	0	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	exon	999719	999859	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	intron	999860	1000041	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	CDS	1000042	1000173	1	-	0	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	exon	1000042	1000173	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	intron	1000174	1000548	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	CDS	1000549	1000738	1	-	1	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	exon	1000549	1000738	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	intron	1000739	1000991	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	CDS	1000992	1001160	0.99	-	2	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	exon	1000992	1001160	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	intron	1001161	1001290	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	CDS	1001291	1001393	1	-	0	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	exon	1001291	1001393	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	intron	1001394	1001629	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	CDS	1001630	1001740	0.84	-	0	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	exon	1001630	1001740	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	intron	1001741	1001868	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	CDS	1001869	1001986	0.93	-	1	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	exon	1001869	1001986	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	intron	1001987	1002097	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	CDS	1002098	1002237	1	-	0	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	exon	1002098	1002237	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	intron	1002238	1002380	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	CDS	1002381	1002608	0.77	-	0	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	exon	1002381	1002608	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	intron	1002609	1002696	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	CDS	1002697	1002861	0.75	-	0	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	exon	1002697	1002861	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	intron	1002862	1003026	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	CDS	1003027	1005216	0.84	-	0	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	exon	1003027	1005216	.	-	.	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
Ledus.C7	AUGUSTUS	start_codon	1005214	1005216	.	-	0	transcript_id "Ledus.C7G010500.t1"; gene_id "Ledus.C7G010500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12945.t1 is derived from g6755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	421487	423247	.	-	.	Ledus.S6G000700
Ledus.S6	AUGUSTUS	transcript	421487	423247	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	stop_codon	421484	421486	.	-	0	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	421487	421674	0.83	-	2	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	421487	421674	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	intron	421675	422270	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	422271	422327	0.93	-	2	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	422271	422327	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	intron	422328	422518	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	422519	422528	0.95	-	0	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	422519	422528	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	intron	422529	422675	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	422676	422733	0.89	-	1	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	422676	422733	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	intron	422734	422900	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	422901	422920	0.89	-	0	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	422901	422920	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	intron	422921	422998	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	422999	423093	0.89	-	2	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	422999	423093	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	intron	423094	423216	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	423217	423247	0.59	-	0	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	423217	423247	.	-	.	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	start_codon	423245	423247	.	-	0	transcript_id "Ledus.S6G000700.t1"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	transcript	421487	423247	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	stop_codon	421484	421486	.	-	0	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	421487	421674	0.76	-	2	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	421487	421674	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	intron	421675	422270	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	422271	422334	0.94	-	0	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	422271	422334	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	intron	422335	422518	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	422519	422528	0.95	-	1	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	422519	422528	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	intron	422529	422675	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	422676	422686	0.95	-	0	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	422676	422686	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	intron	422687	422900	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	422901	422920	0.89	-	2	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	422901	422920	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	intron	422921	422994	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	422995	423093	0.91	-	2	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	422995	423093	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	intron	423094	423216	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	CDS	423217	423247	0.63	-	0	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	exon	423217	423247	.	-	.	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
Ledus.S6	AUGUSTUS	start_codon	423245	423247	.	-	0	transcript_id "Ledus.S6G000700.t2"; gene_id "Ledus.S6G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10470.t1 is derived from g11500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15462134	15463264	.	-	.	Ledus.S3G194700
Ledus.S3	AUGUSTUS	transcript	15462134	15463264	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	stop_codon	15462131	15462133	.	-	0	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	CDS	15462134	15462292	0.99	-	0	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	exon	15462134	15462292	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	intron	15462293	15462367	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	CDS	15462368	15462372	1	-	2	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	exon	15462368	15462372	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	intron	15462373	15462419	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	CDS	15462420	15462457	1	-	1	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	exon	15462420	15462457	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	intron	15462458	15462546	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	CDS	15462547	15462599	1	-	0	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	exon	15462547	15462599	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	intron	15462600	15462694	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	CDS	15462695	15462769	1	-	0	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	exon	15462695	15462769	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	intron	15462770	15462896	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	CDS	15462897	15462937	1	-	2	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	exon	15462897	15462937	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	intron	15462938	15463230	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	CDS	15463231	15463264	0.63	-	0	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	exon	15463231	15463264	.	-	.	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
Ledus.S3	AUGUSTUS	start_codon	15463262	15463264	.	-	0	transcript_id "Ledus.S3G194700.t1"; gene_id "Ledus.S3G194700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11390.t1 is derived from g5008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3960647	3962405	.	-	.	Ledus.S4G054600
Ledus.S4	AUGUSTUS	transcript	3960647	3962405	.	-	.	transcript_id "Ledus.S4G054600.t1"; gene_id "Ledus.S4G054600"
Ledus.S4	AUGUSTUS	stop_codon	3960644	3960646	.	-	0	transcript_id "Ledus.S4G054600.t1"; gene_id "Ledus.S4G054600"
Ledus.S4	AUGUSTUS	CDS	3960647	3960653	1	-	1	transcript_id "Ledus.S4G054600.t1"; gene_id "Ledus.S4G054600"
Ledus.S4	AUGUSTUS	exon	3960647	3960653	.	-	.	transcript_id "Ledus.S4G054600.t1"; gene_id "Ledus.S4G054600"
Ledus.S4	AUGUSTUS	intron	3960654	3960831	.	-	.	transcript_id "Ledus.S4G054600.t1"; gene_id "Ledus.S4G054600"
Ledus.S4	AUGUSTUS	CDS	3960832	3962405	0.94	-	0	transcript_id "Ledus.S4G054600.t1"; gene_id "Ledus.S4G054600"
Ledus.S4	AUGUSTUS	exon	3960832	3962405	.	-	.	transcript_id "Ledus.S4G054600.t1"; gene_id "Ledus.S4G054600"
Ledus.S4	AUGUSTUS	start_codon	3962403	3962405	.	-	0	transcript_id "Ledus.S4G054600.t1"; gene_id "Ledus.S4G054600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11428.t1 is derived from g5046.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4244080	4244658	.	+	.	Ledus.S4G058400
Ledus.S4	AUGUSTUS	transcript	4244080	4244658	.	+	.	transcript_id "Ledus.S4G058400.t1"; gene_id "Ledus.S4G058400"
Ledus.S4	AUGUSTUS	start_codon	4244080	4244082	.	+	0	transcript_id "Ledus.S4G058400.t1"; gene_id "Ledus.S4G058400"
Ledus.S4	AUGUSTUS	CDS	4244080	4244279	0.93	+	0	transcript_id "Ledus.S4G058400.t1"; gene_id "Ledus.S4G058400"
Ledus.S4	AUGUSTUS	exon	4244080	4244279	.	+	.	transcript_id "Ledus.S4G058400.t1"; gene_id "Ledus.S4G058400"
Ledus.S4	AUGUSTUS	intron	4244280	4244369	.	+	.	transcript_id "Ledus.S4G058400.t1"; gene_id "Ledus.S4G058400"
Ledus.S4	AUGUSTUS	CDS	4244370	4244658	0.82	+	1	transcript_id "Ledus.S4G058400.t1"; gene_id "Ledus.S4G058400"
Ledus.S4	AUGUSTUS	exon	4244370	4244658	.	+	.	transcript_id "Ledus.S4G058400.t1"; gene_id "Ledus.S4G058400"
Ledus.S4	AUGUSTUS	stop_codon	4244659	4244661	.	+	0	transcript_id "Ledus.S4G058400.t1"; gene_id "Ledus.S4G058400"
# This transcript jg8592.t2 is derived from g9622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8593.t1 is derived from g9623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	491473	493157	.	+	.	Ledus.S3G007000
Ledus.S3	AUGUSTUS	transcript	491473	493157	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	start_codon	491473	491475	.	+	0	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	CDS	491473	491559	0.98	+	0	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	exon	491473	491559	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	intron	491560	491805	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	CDS	491806	492017	1	+	0	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	exon	491806	492017	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	intron	492018	492164	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	CDS	492165	492444	1	+	1	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	exon	492165	492444	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	intron	492445	492532	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	CDS	492533	492604	1	+	0	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	exon	492533	492604	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	intron	492605	492678	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	CDS	492679	492795	1	+	0	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	exon	492679	492795	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	intron	492796	492885	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	CDS	492886	492951	1	+	0	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	exon	492886	492951	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	intron	492952	493043	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	CDS	493044	493157	1	+	0	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	exon	493044	493157	.	+	.	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
Ledus.S3	AUGUSTUS	stop_codon	493158	493160	.	+	0	transcript_id "Ledus.S3G007000.t1"; gene_id "Ledus.S3G007000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4597.t1 is derived from g2034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18014287	18015499	.	+	.	Ledus.S1G201800
Ledus.S1	AUGUSTUS	transcript	18014287	18015499	.	+	.	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	start_codon	18014287	18014289	.	+	0	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	CDS	18014287	18014374	0.93	+	0	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	exon	18014287	18014374	.	+	.	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	intron	18014375	18014580	.	+	.	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	CDS	18014581	18014652	0.78	+	2	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	exon	18014581	18014652	.	+	.	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	intron	18014653	18014748	.	+	.	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	CDS	18014749	18014837	0.63	+	2	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	exon	18014749	18014837	.	+	.	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	intron	18014838	18014964	.	+	.	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	CDS	18014965	18015039	0.75	+	0	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	exon	18014965	18015039	.	+	.	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	intron	18015040	18015167	.	+	.	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	CDS	18015168	18015340	0.87	+	0	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	exon	18015168	18015340	.	+	.	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	intron	18015341	18015477	.	+	.	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	CDS	18015478	18015499	0.99	+	1	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	exon	18015478	18015499	.	+	.	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
Ledus.S1	AUGUSTUS	stop_codon	18015500	18015502	.	+	0	transcript_id "Ledus.S1G201800.t1"; gene_id "Ledus.S1G201800"
# This transcript jg8975.t1 is derived from g10005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3640622	3640954	.	+	.	Ledus.S3G045200
Ledus.S3	AUGUSTUS	transcript	3640622	3640954	.	+	.	transcript_id "Ledus.S3G045200.t1"; gene_id "Ledus.S3G045200"
Ledus.S3	AUGUSTUS	start_codon	3640622	3640624	.	+	0	transcript_id "Ledus.S3G045200.t1"; gene_id "Ledus.S3G045200"
Ledus.S3	AUGUSTUS	CDS	3640622	3640954	0.77	+	0	transcript_id "Ledus.S3G045200.t1"; gene_id "Ledus.S3G045200"
Ledus.S3	AUGUSTUS	exon	3640622	3640954	.	+	.	transcript_id "Ledus.S3G045200.t1"; gene_id "Ledus.S3G045200"
Ledus.S3	AUGUSTUS	stop_codon	3640955	3640957	.	+	0	transcript_id "Ledus.S3G045200.t1"; gene_id "Ledus.S3G045200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11143.t1 is derived from g4761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2140156	2142359	.	+	.	Ledus.S4G029900
Ledus.S4	AUGUSTUS	transcript	2140156	2142359	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	start_codon	2140156	2140158	.	+	0	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	CDS	2140156	2140320	0.84	+	0	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	exon	2140156	2140320	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	intron	2140321	2140407	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	CDS	2140408	2140473	0.9	+	0	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	exon	2140408	2140473	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	intron	2140474	2140575	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	CDS	2140576	2140640	1	+	0	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	exon	2140576	2140640	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	intron	2140641	2140754	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	CDS	2140755	2140870	1	+	1	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	exon	2140755	2140870	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	intron	2140871	2140995	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	CDS	2140996	2141071	1	+	2	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	exon	2140996	2141071	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	intron	2141072	2141202	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	CDS	2141203	2141279	1	+	1	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	exon	2141203	2141279	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	intron	2141280	2141402	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	CDS	2141403	2141464	1	+	2	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	exon	2141403	2141464	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	intron	2141465	2141544	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	CDS	2141545	2141676	1	+	0	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	exon	2141545	2141676	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	intron	2141677	2141832	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	CDS	2141833	2141886	1	+	0	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	exon	2141833	2141886	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	intron	2141887	2141966	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	CDS	2141967	2142032	1	+	0	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	exon	2141967	2142032	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	intron	2142033	2142145	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	CDS	2142146	2142220	1	+	0	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	exon	2142146	2142220	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	intron	2142221	2142311	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	CDS	2142312	2142359	1	+	0	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	exon	2142312	2142359	.	+	.	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
Ledus.S4	AUGUSTUS	stop_codon	2142360	2142362	.	+	0	transcript_id "Ledus.S4G029900.t1"; gene_id "Ledus.S4G029900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6599.t1 is derived from g4042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32597852	32598587	.	+	.	Ledus.S1G402000
Ledus.S1	AUGUSTUS	transcript	32597852	32598587	.	+	.	transcript_id "Ledus.S1G402000.t1"; gene_id "Ledus.S1G402000"
Ledus.S1	AUGUSTUS	start_codon	32597852	32597854	.	+	0	transcript_id "Ledus.S1G402000.t1"; gene_id "Ledus.S1G402000"
Ledus.S1	AUGUSTUS	CDS	32597852	32598083	0.91	+	0	transcript_id "Ledus.S1G402000.t1"; gene_id "Ledus.S1G402000"
Ledus.S1	AUGUSTUS	exon	32597852	32598083	.	+	.	transcript_id "Ledus.S1G402000.t1"; gene_id "Ledus.S1G402000"
Ledus.S1	AUGUSTUS	intron	32598084	32598189	.	+	.	transcript_id "Ledus.S1G402000.t1"; gene_id "Ledus.S1G402000"
Ledus.S1	AUGUSTUS	CDS	32598190	32598587	0.54	+	2	transcript_id "Ledus.S1G402000.t1"; gene_id "Ledus.S1G402000"
Ledus.S1	AUGUSTUS	exon	32598190	32598587	.	+	.	transcript_id "Ledus.S1G402000.t1"; gene_id "Ledus.S1G402000"
Ledus.S1	AUGUSTUS	stop_codon	32598588	32598590	.	+	0	transcript_id "Ledus.S1G402000.t1"; gene_id "Ledus.S1G402000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2002.t1 is derived from g8865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14135900	14136664	.	+	.	Ledus.S2G188400
Ledus.S2	AUGUSTUS	transcript	14135900	14136664	.	+	.	transcript_id "Ledus.S2G188400.t1"; gene_id "Ledus.S2G188400"
Ledus.S2	AUGUSTUS	start_codon	14135900	14135902	.	+	0	transcript_id "Ledus.S2G188400.t1"; gene_id "Ledus.S2G188400"
Ledus.S2	AUGUSTUS	CDS	14135900	14136505	0.45	+	0	transcript_id "Ledus.S2G188400.t1"; gene_id "Ledus.S2G188400"
Ledus.S2	AUGUSTUS	exon	14135900	14136505	.	+	.	transcript_id "Ledus.S2G188400.t1"; gene_id "Ledus.S2G188400"
Ledus.S2	AUGUSTUS	intron	14136506	14136586	.	+	.	transcript_id "Ledus.S2G188400.t1"; gene_id "Ledus.S2G188400"
Ledus.S2	AUGUSTUS	CDS	14136587	14136664	0.99	+	0	transcript_id "Ledus.S2G188400.t1"; gene_id "Ledus.S2G188400"
Ledus.S2	AUGUSTUS	exon	14136587	14136664	.	+	.	transcript_id "Ledus.S2G188400.t1"; gene_id "Ledus.S2G188400"
Ledus.S2	AUGUSTUS	stop_codon	14136665	14136667	.	+	0	transcript_id "Ledus.S2G188400.t1"; gene_id "Ledus.S2G188400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4376.t1 is derived from g1812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16698920	16700137	.	-	.	Ledus.S1G179700
Ledus.S1	AUGUSTUS	transcript	16698920	16700137	.	-	.	transcript_id "Ledus.S1G179700.t1"; gene_id "Ledus.S1G179700"
Ledus.S1	AUGUSTUS	stop_codon	16698917	16698919	.	-	0	transcript_id "Ledus.S1G179700.t1"; gene_id "Ledus.S1G179700"
Ledus.S1	AUGUSTUS	CDS	16698920	16698988	0.42	-	0	transcript_id "Ledus.S1G179700.t1"; gene_id "Ledus.S1G179700"
Ledus.S1	AUGUSTUS	exon	16698920	16698988	.	-	.	transcript_id "Ledus.S1G179700.t1"; gene_id "Ledus.S1G179700"
Ledus.S1	AUGUSTUS	intron	16698989	16699291	.	-	.	transcript_id "Ledus.S1G179700.t1"; gene_id "Ledus.S1G179700"
Ledus.S1	AUGUSTUS	CDS	16699292	16700137	0.55	-	0	transcript_id "Ledus.S1G179700.t1"; gene_id "Ledus.S1G179700"
Ledus.S1	AUGUSTUS	exon	16699292	16700137	.	-	.	transcript_id "Ledus.S1G179700.t1"; gene_id "Ledus.S1G179700"
Ledus.S1	AUGUSTUS	start_codon	16700135	16700137	.	-	0	transcript_id "Ledus.S1G179700.t1"; gene_id "Ledus.S1G179700"
# This transcript jg7298.t2 is derived from g11969.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7299.t1 is derived from g11970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	865878	866640	.	+	.	Ledus.S5G007700
Ledus.S5	AUGUSTUS	transcript	865878	866640	.	+	.	transcript_id "Ledus.S5G007700.t1"; gene_id "Ledus.S5G007700"
Ledus.S5	AUGUSTUS	start_codon	865878	865880	.	+	0	transcript_id "Ledus.S5G007700.t1"; gene_id "Ledus.S5G007700"
Ledus.S5	AUGUSTUS	CDS	865878	866003	0.57	+	0	transcript_id "Ledus.S5G007700.t1"; gene_id "Ledus.S5G007700"
Ledus.S5	AUGUSTUS	exon	865878	866003	.	+	.	transcript_id "Ledus.S5G007700.t1"; gene_id "Ledus.S5G007700"
Ledus.S5	AUGUSTUS	intron	866004	866343	.	+	.	transcript_id "Ledus.S5G007700.t1"; gene_id "Ledus.S5G007700"
Ledus.S5	AUGUSTUS	CDS	866344	866373	0.32	+	0	transcript_id "Ledus.S5G007700.t1"; gene_id "Ledus.S5G007700"
Ledus.S5	AUGUSTUS	exon	866344	866373	.	+	.	transcript_id "Ledus.S5G007700.t1"; gene_id "Ledus.S5G007700"
Ledus.S5	AUGUSTUS	intron	866374	866598	.	+	.	transcript_id "Ledus.S5G007700.t1"; gene_id "Ledus.S5G007700"
Ledus.S5	AUGUSTUS	CDS	866599	866640	0.99	+	0	transcript_id "Ledus.S5G007700.t1"; gene_id "Ledus.S5G007700"
Ledus.S5	AUGUSTUS	exon	866599	866640	.	+	.	transcript_id "Ledus.S5G007700.t1"; gene_id "Ledus.S5G007700"
Ledus.S5	AUGUSTUS	stop_codon	866641	866643	.	+	0	transcript_id "Ledus.S5G007700.t1"; gene_id "Ledus.S5G007700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6710.t1 is derived from g4153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33447645	33450675	.	-	.	Ledus.S1G413100
Ledus.S1	AUGUSTUS	transcript	33447645	33450675	.	-	.	transcript_id "Ledus.S1G413100.t1"; gene_id "Ledus.S1G413100"
Ledus.S1	AUGUSTUS	stop_codon	33447642	33447644	.	-	0	transcript_id "Ledus.S1G413100.t1"; gene_id "Ledus.S1G413100"
Ledus.S1	AUGUSTUS	CDS	33447645	33450398	0.96	-	0	transcript_id "Ledus.S1G413100.t1"; gene_id "Ledus.S1G413100"
Ledus.S1	AUGUSTUS	exon	33447645	33450398	.	-	.	transcript_id "Ledus.S1G413100.t1"; gene_id "Ledus.S1G413100"
Ledus.S1	AUGUSTUS	intron	33450399	33450498	.	-	.	transcript_id "Ledus.S1G413100.t1"; gene_id "Ledus.S1G413100"
Ledus.S1	AUGUSTUS	CDS	33450499	33450675	0.84	-	0	transcript_id "Ledus.S1G413100.t1"; gene_id "Ledus.S1G413100"
Ledus.S1	AUGUSTUS	exon	33450499	33450675	.	-	.	transcript_id "Ledus.S1G413100.t1"; gene_id "Ledus.S1G413100"
Ledus.S1	AUGUSTUS	start_codon	33450673	33450675	.	-	0	transcript_id "Ledus.S1G413100.t1"; gene_id "Ledus.S1G413100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4601.t1 is derived from g2038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18033754	18034062	.	+	.	Ledus.S1G202200
Ledus.S1	AUGUSTUS	transcript	18033754	18034062	.	+	.	transcript_id "Ledus.S1G202200.t1"; gene_id "Ledus.S1G202200"
Ledus.S1	AUGUSTUS	start_codon	18033754	18033756	.	+	0	transcript_id "Ledus.S1G202200.t1"; gene_id "Ledus.S1G202200"
Ledus.S1	AUGUSTUS	CDS	18033754	18034062	0.94	+	0	transcript_id "Ledus.S1G202200.t1"; gene_id "Ledus.S1G202200"
Ledus.S1	AUGUSTUS	exon	18033754	18034062	.	+	.	transcript_id "Ledus.S1G202200.t1"; gene_id "Ledus.S1G202200"
Ledus.S1	AUGUSTUS	stop_codon	18034063	18034065	.	+	0	transcript_id "Ledus.S1G202200.t1"; gene_id "Ledus.S1G202200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg31.t1 is derived from g9543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C12	AUGUSTUS	gene	15035	20201	.	-	.	Ledus.C12G000200
Ledus.C12	AUGUSTUS	transcript	15035	20201	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	stop_codon	15032	15034	.	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	15035	15148	1	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	15035	15148	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	15149	15224	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	15225	15292	1	-	2	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	15225	15292	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	15293	15367	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	15368	15425	1	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	15368	15425	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	15426	15539	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	15540	15726	1	-	1	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	15540	15726	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	15727	15912	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	15913	15989	1	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	15913	15989	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	15990	16084	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	16085	16321	1	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	16085	16321	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	16322	16576	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	16577	16705	1	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	16577	16705	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	16706	16846	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	16847	16999	1	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	16847	16999	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	17000	17073	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	17074	17364	1	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	17074	17364	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	17365	17469	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	17470	17587	1	-	1	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	17470	17587	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	17588	17759	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	17760	18031	1	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	17760	18031	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	18032	18408	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	18409	18684	1	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	18409	18684	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	18685	18815	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	18816	18992	1	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	18816	18992	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	18993	19092	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	19093	19194	1	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	19093	19194	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	19195	19503	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	19504	19751	1	-	2	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	19504	19751	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	intron	19752	19966	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	CDS	19967	20201	0.69	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	exon	19967	20201	.	-	.	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
Ledus.C12	AUGUSTUS	start_codon	20199	20201	.	-	0	transcript_id "Ledus.C12G000200.t1"; gene_id "Ledus.C12G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3025.t1 is derived from g460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5380935	5381360	.	-	.	Ledus.S1G044600
Ledus.S1	AUGUSTUS	transcript	5380935	5381360	.	-	.	transcript_id "Ledus.S1G044600.t1"; gene_id "Ledus.S1G044600"
Ledus.S1	AUGUSTUS	stop_codon	5380932	5380934	.	-	0	transcript_id "Ledus.S1G044600.t1"; gene_id "Ledus.S1G044600"
Ledus.S1	AUGUSTUS	CDS	5380935	5381122	0.45	-	2	transcript_id "Ledus.S1G044600.t1"; gene_id "Ledus.S1G044600"
Ledus.S1	AUGUSTUS	exon	5380935	5381122	.	-	.	transcript_id "Ledus.S1G044600.t1"; gene_id "Ledus.S1G044600"
Ledus.S1	AUGUSTUS	intron	5381123	5381293	.	-	.	transcript_id "Ledus.S1G044600.t1"; gene_id "Ledus.S1G044600"
Ledus.S1	AUGUSTUS	CDS	5381294	5381360	0.49	-	0	transcript_id "Ledus.S1G044600.t1"; gene_id "Ledus.S1G044600"
Ledus.S1	AUGUSTUS	exon	5381294	5381360	.	-	.	transcript_id "Ledus.S1G044600.t1"; gene_id "Ledus.S1G044600"
Ledus.S1	AUGUSTUS	start_codon	5381358	5381360	.	-	0	transcript_id "Ledus.S1G044600.t1"; gene_id "Ledus.S1G044600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6482.t1 is derived from g3925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31541600	31542237	.	-	.	Ledus.S1G390300
Ledus.S1	AUGUSTUS	transcript	31541600	31542237	.	-	.	transcript_id "Ledus.S1G390300.t1"; gene_id "Ledus.S1G390300"
Ledus.S1	AUGUSTUS	stop_codon	31541597	31541599	.	-	0	transcript_id "Ledus.S1G390300.t1"; gene_id "Ledus.S1G390300"
Ledus.S1	AUGUSTUS	CDS	31541600	31541740	0.91	-	0	transcript_id "Ledus.S1G390300.t1"; gene_id "Ledus.S1G390300"
Ledus.S1	AUGUSTUS	exon	31541600	31541740	.	-	.	transcript_id "Ledus.S1G390300.t1"; gene_id "Ledus.S1G390300"
Ledus.S1	AUGUSTUS	intron	31541741	31542147	.	-	.	transcript_id "Ledus.S1G390300.t1"; gene_id "Ledus.S1G390300"
Ledus.S1	AUGUSTUS	CDS	31542148	31542237	0.91	-	0	transcript_id "Ledus.S1G390300.t1"; gene_id "Ledus.S1G390300"
Ledus.S1	AUGUSTUS	exon	31542148	31542237	.	-	.	transcript_id "Ledus.S1G390300.t1"; gene_id "Ledus.S1G390300"
Ledus.S1	AUGUSTUS	start_codon	31542235	31542237	.	-	0	transcript_id "Ledus.S1G390300.t1"; gene_id "Ledus.S1G390300"
# This transcript jg4265.t2 is derived from g1701.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4266.t1 is derived from g1702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15823724	15826219	.	-	.	Ledus.S1G168700
Ledus.S1	AUGUSTUS	transcript	15823724	15826219	.	-	.	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	stop_codon	15823721	15823723	.	-	0	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	CDS	15823724	15823800	0.96	-	2	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	exon	15823724	15823800	.	-	.	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	intron	15823801	15824202	.	-	.	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	CDS	15824203	15825182	0.76	-	1	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	exon	15824203	15825182	.	-	.	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	intron	15825183	15825311	.	-	.	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	CDS	15825312	15825449	0.37	-	1	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	exon	15825312	15825449	.	-	.	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	intron	15825450	15825773	.	-	.	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	CDS	15825774	15825891	0.76	-	2	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	exon	15825774	15825891	.	-	.	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	intron	15825892	15825978	.	-	.	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	CDS	15825979	15826219	0.93	-	0	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	exon	15825979	15826219	.	-	.	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
Ledus.S1	AUGUSTUS	start_codon	15826217	15826219	.	-	0	transcript_id "Ledus.S1G168700.t1"; gene_id "Ledus.S1G168700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9238.t1 is derived from g10268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5550996	5552825	.	+	.	Ledus.S3G071500
Ledus.S3	AUGUSTUS	transcript	5550996	5552825	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	start_codon	5550996	5550998	.	+	0	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	CDS	5550996	5551136	0.92	+	0	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	exon	5550996	5551136	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	intron	5551137	5551218	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	CDS	5551219	5551344	1	+	0	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	exon	5551219	5551344	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	intron	5551345	5551423	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	CDS	5551424	5551609	1	+	0	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	exon	5551424	5551609	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	intron	5551610	5551706	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	CDS	5551707	5551788	1	+	0	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	exon	5551707	5551788	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	intron	5551789	5551876	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	CDS	5551877	5552098	1	+	2	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	exon	5551877	5552098	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	intron	5552099	5552179	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	CDS	5552180	5552280	1	+	2	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	exon	5552180	5552280	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	intron	5552281	5552360	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	CDS	5552361	5552432	1	+	0	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	exon	5552361	5552432	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	intron	5552433	5552555	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	CDS	5552556	5552825	1	+	0	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	exon	5552556	5552825	.	+	.	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
Ledus.S3	AUGUSTUS	stop_codon	5552826	5552828	.	+	0	transcript_id "Ledus.S3G071500.t1"; gene_id "Ledus.S3G071500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1109.t1 is derived from g7970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7575865	7580014	.	-	.	Ledus.S2G099100
Ledus.S2	AUGUSTUS	transcript	7575865	7580014	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	stop_codon	7575862	7575864	.	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7575865	7575980	1	-	2	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7575865	7575980	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	intron	7575981	7576103	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7576104	7576227	1	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7576104	7576227	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	intron	7576228	7576439	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7576440	7576763	1	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7576440	7576763	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	intron	7576764	7576856	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7576857	7576982	1	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7576857	7576982	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	intron	7576983	7577064	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7577065	7577173	1	-	1	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7577065	7577173	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	intron	7577174	7577297	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7577298	7577422	1	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7577298	7577422	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	intron	7577423	7577525	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7577526	7577639	0.97	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7577526	7577639	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	intron	7577640	7577753	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7577754	7577840	1	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7577754	7577840	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	intron	7577841	7577955	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7577956	7578141	1	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7577956	7578141	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	intron	7578142	7578295	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7578296	7578361	1	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7578296	7578361	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	intron	7578362	7578608	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7578609	7578734	1	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7578609	7578734	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	intron	7578735	7578816	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7578817	7578882	1	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7578817	7578882	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	intron	7578883	7578979	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	CDS	7578980	7580014	0.94	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	exon	7578980	7580014	.	-	.	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
Ledus.S2	AUGUSTUS	start_codon	7580012	7580014	.	-	0	transcript_id "Ledus.S2G099100.t1"; gene_id "Ledus.S2G099100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5729.t1 is derived from g3168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26285181	26289417	.	+	.	Ledus.S1G315000
Ledus.S1	AUGUSTUS	transcript	26285181	26289417	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	start_codon	26285181	26285183	.	+	0	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26285181	26285424	0.98	+	0	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26285181	26285424	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26285425	26285508	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26285509	26285792	1	+	2	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26285509	26285792	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26285793	26285872	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26285873	26286144	1	+	0	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26285873	26286144	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26286145	26286223	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26286224	26286505	1	+	1	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26286224	26286505	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26286506	26286574	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26286575	26286828	1	+	1	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26286575	26286828	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26286829	26286911	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26286912	26287026	1	+	2	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26286912	26287026	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26287027	26287105	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26287106	26287177	1	+	1	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26287106	26287177	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26287178	26287263	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26287264	26287335	1	+	1	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26287264	26287335	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26287336	26287443	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26287444	26287512	1	+	1	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26287444	26287512	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26287513	26287602	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26287603	26287883	0.91	+	1	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26287603	26287883	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26287884	26287972	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26287973	26288184	1	+	2	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26287973	26288184	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26288185	26288267	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26288268	26288394	1	+	0	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26288268	26288394	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26288395	26288481	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26288482	26288547	1	+	2	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26288482	26288547	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26288548	26288628	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26288629	26288815	1	+	2	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26288629	26288815	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26288816	26288892	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26288893	26289019	1	+	1	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26288893	26289019	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	intron	26289020	26289099	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	CDS	26289100	26289417	0.99	+	0	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	exon	26289100	26289417	.	+	.	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
Ledus.S1	AUGUSTUS	stop_codon	26289418	26289420	.	+	0	transcript_id "Ledus.S1G315000.t1"; gene_id "Ledus.S1G315000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9258.t1 is derived from g10288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5633722	5634600	.	+	.	Ledus.S3G073500
Ledus.S3	AUGUSTUS	transcript	5633722	5634600	.	+	.	transcript_id "Ledus.S3G073500.t1"; gene_id "Ledus.S3G073500"
Ledus.S3	AUGUSTUS	start_codon	5633722	5633724	.	+	0	transcript_id "Ledus.S3G073500.t1"; gene_id "Ledus.S3G073500"
Ledus.S3	AUGUSTUS	CDS	5633722	5634600	0.92	+	0	transcript_id "Ledus.S3G073500.t1"; gene_id "Ledus.S3G073500"
Ledus.S3	AUGUSTUS	exon	5633722	5634600	.	+	.	transcript_id "Ledus.S3G073500.t1"; gene_id "Ledus.S3G073500"
Ledus.S3	AUGUSTUS	stop_codon	5634601	5634603	.	+	0	transcript_id "Ledus.S3G073500.t1"; gene_id "Ledus.S3G073500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6063.t1 is derived from g3506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28797802	28798794	.	+	.	Ledus.S1G348400
Ledus.S1	AUGUSTUS	transcript	28797802	28798794	.	+	.	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	start_codon	28797802	28797804	.	+	0	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	CDS	28797802	28797859	1	+	0	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	exon	28797802	28797859	.	+	.	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	intron	28797860	28798065	.	+	.	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	CDS	28798066	28798134	1	+	2	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	exon	28798066	28798134	.	+	.	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	intron	28798135	28798292	.	+	.	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	CDS	28798293	28798408	1	+	2	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	exon	28798293	28798408	.	+	.	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	intron	28798409	28798560	.	+	.	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	CDS	28798561	28798623	1	+	0	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	exon	28798561	28798623	.	+	.	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	intron	28798624	28798719	.	+	.	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	CDS	28798720	28798794	0.75	+	0	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	exon	28798720	28798794	.	+	.	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
Ledus.S1	AUGUSTUS	stop_codon	28798795	28798797	.	+	0	transcript_id "Ledus.S1G348400.t1"; gene_id "Ledus.S1G348400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13167.t1 is derived from g6977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7876645	7876848	.	+	.	Ledus.S6G022900
Ledus.S6	AUGUSTUS	transcript	7876645	7876848	.	+	.	transcript_id "Ledus.S6G022900.t1"; gene_id "Ledus.S6G022900"
Ledus.S6	AUGUSTUS	start_codon	7876645	7876647	.	+	0	transcript_id "Ledus.S6G022900.t1"; gene_id "Ledus.S6G022900"
Ledus.S6	AUGUSTUS	CDS	7876645	7876848	0.83	+	0	transcript_id "Ledus.S6G022900.t1"; gene_id "Ledus.S6G022900"
Ledus.S6	AUGUSTUS	exon	7876645	7876848	.	+	.	transcript_id "Ledus.S6G022900.t1"; gene_id "Ledus.S6G022900"
Ledus.S6	AUGUSTUS	stop_codon	7876849	7876851	.	+	0	transcript_id "Ledus.S6G022900.t1"; gene_id "Ledus.S6G022900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5010.t1 is derived from g2448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21116455	21117051	.	+	.	Ledus.S1G243100
Ledus.S1	AUGUSTUS	transcript	21116455	21117051	.	+	.	transcript_id "Ledus.S1G243100.t1"; gene_id "Ledus.S1G243100"
Ledus.S1	AUGUSTUS	start_codon	21116455	21116457	.	+	0	transcript_id "Ledus.S1G243100.t1"; gene_id "Ledus.S1G243100"
Ledus.S1	AUGUSTUS	CDS	21116455	21117051	0.89	+	0	transcript_id "Ledus.S1G243100.t1"; gene_id "Ledus.S1G243100"
Ledus.S1	AUGUSTUS	exon	21116455	21117051	.	+	.	transcript_id "Ledus.S1G243100.t1"; gene_id "Ledus.S1G243100"
Ledus.S1	AUGUSTUS	stop_codon	21117052	21117054	.	+	0	transcript_id "Ledus.S1G243100.t1"; gene_id "Ledus.S1G243100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1104.t1 is derived from g7965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7536498	7536911	.	+	.	Ledus.S2G098600
Ledus.S2	AUGUSTUS	transcript	7536498	7536911	.	+	.	transcript_id "Ledus.S2G098600.t1"; gene_id "Ledus.S2G098600"
Ledus.S2	AUGUSTUS	start_codon	7536498	7536500	.	+	0	transcript_id "Ledus.S2G098600.t1"; gene_id "Ledus.S2G098600"
Ledus.S2	AUGUSTUS	CDS	7536498	7536911	0.89	+	0	transcript_id "Ledus.S2G098600.t1"; gene_id "Ledus.S2G098600"
Ledus.S2	AUGUSTUS	exon	7536498	7536911	.	+	.	transcript_id "Ledus.S2G098600.t1"; gene_id "Ledus.S2G098600"
Ledus.S2	AUGUSTUS	stop_codon	7536912	7536914	.	+	0	transcript_id "Ledus.S2G098600.t1"; gene_id "Ledus.S2G098600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6523.t1 is derived from g3966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31871443	31875891	.	+	.	Ledus.S1G394400
Ledus.S1	AUGUSTUS	transcript	31871443	31875891	.	+	.	transcript_id "Ledus.S1G394400.t1"; gene_id "Ledus.S1G394400"
Ledus.S1	AUGUSTUS	start_codon	31871443	31871445	.	+	0	transcript_id "Ledus.S1G394400.t1"; gene_id "Ledus.S1G394400"
Ledus.S1	AUGUSTUS	CDS	31871443	31871892	0.84	+	0	transcript_id "Ledus.S1G394400.t1"; gene_id "Ledus.S1G394400"
Ledus.S1	AUGUSTUS	exon	31871443	31871892	.	+	.	transcript_id "Ledus.S1G394400.t1"; gene_id "Ledus.S1G394400"
Ledus.S1	AUGUSTUS	intron	31871893	31875765	.	+	.	transcript_id "Ledus.S1G394400.t1"; gene_id "Ledus.S1G394400"
Ledus.S1	AUGUSTUS	CDS	31875766	31875891	0.01	+	0	transcript_id "Ledus.S1G394400.t1"; gene_id "Ledus.S1G394400"
Ledus.S1	AUGUSTUS	exon	31875766	31875891	.	+	.	transcript_id "Ledus.S1G394400.t1"; gene_id "Ledus.S1G394400"
Ledus.S1	AUGUSTUS	stop_codon	31875892	31875894	.	+	0	transcript_id "Ledus.S1G394400.t1"; gene_id "Ledus.S1G394400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8806.t1 is derived from g9836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2052926	2055346	.	-	.	Ledus.S3G028300
Ledus.S3	AUGUSTUS	transcript	2052926	2055346	.	-	.	transcript_id "Ledus.S3G028300.t1"; gene_id "Ledus.S3G028300"
Ledus.S3	AUGUSTUS	stop_codon	2052923	2052925	.	-	0	transcript_id "Ledus.S3G028300.t1"; gene_id "Ledus.S3G028300"
Ledus.S3	AUGUSTUS	CDS	2052926	2055346	1	-	0	transcript_id "Ledus.S3G028300.t1"; gene_id "Ledus.S3G028300"
Ledus.S3	AUGUSTUS	exon	2052926	2055346	.	-	.	transcript_id "Ledus.S3G028300.t1"; gene_id "Ledus.S3G028300"
Ledus.S3	AUGUSTUS	start_codon	2055344	2055346	.	-	0	transcript_id "Ledus.S3G028300.t1"; gene_id "Ledus.S3G028300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1536.t1 is derived from g8397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10843381	10844496	.	+	.	Ledus.S2G141800
Ledus.S2	AUGUSTUS	transcript	10843381	10844496	.	+	.	transcript_id "Ledus.S2G141800.t1"; gene_id "Ledus.S2G141800"
Ledus.S2	AUGUSTUS	start_codon	10843381	10843383	.	+	0	transcript_id "Ledus.S2G141800.t1"; gene_id "Ledus.S2G141800"
Ledus.S2	AUGUSTUS	CDS	10843381	10844496	0.42	+	0	transcript_id "Ledus.S2G141800.t1"; gene_id "Ledus.S2G141800"
Ledus.S2	AUGUSTUS	exon	10843381	10844496	.	+	.	transcript_id "Ledus.S2G141800.t1"; gene_id "Ledus.S2G141800"
Ledus.S2	AUGUSTUS	stop_codon	10844497	10844499	.	+	0	transcript_id "Ledus.S2G141800.t1"; gene_id "Ledus.S2G141800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7544.t1 is derived from g12215.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3759923	3760453	.	+	.	Ledus.S5G032200
Ledus.S5	AUGUSTUS	transcript	3759923	3760453	.	+	.	transcript_id "Ledus.S5G032200.t1"; gene_id "Ledus.S5G032200"
Ledus.S5	AUGUSTUS	start_codon	3759923	3759925	.	+	0	transcript_id "Ledus.S5G032200.t1"; gene_id "Ledus.S5G032200"
Ledus.S5	AUGUSTUS	CDS	3759923	3760088	1	+	0	transcript_id "Ledus.S5G032200.t1"; gene_id "Ledus.S5G032200"
Ledus.S5	AUGUSTUS	exon	3759923	3760088	.	+	.	transcript_id "Ledus.S5G032200.t1"; gene_id "Ledus.S5G032200"
Ledus.S5	AUGUSTUS	intron	3760089	3760223	.	+	.	transcript_id "Ledus.S5G032200.t1"; gene_id "Ledus.S5G032200"
Ledus.S5	AUGUSTUS	CDS	3760224	3760453	1	+	2	transcript_id "Ledus.S5G032200.t1"; gene_id "Ledus.S5G032200"
Ledus.S5	AUGUSTUS	exon	3760224	3760453	.	+	.	transcript_id "Ledus.S5G032200.t1"; gene_id "Ledus.S5G032200"
Ledus.S5	AUGUSTUS	stop_codon	3760454	3760456	.	+	0	transcript_id "Ledus.S5G032200.t1"; gene_id "Ledus.S5G032200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3980.t1 is derived from g1416.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13903377	13904738	.	-	.	Ledus.S1G140100
Ledus.S1	AUGUSTUS	transcript	13903377	13904738	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	stop_codon	13903374	13903376	.	-	0	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	CDS	13903377	13903486	1	-	2	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	exon	13903377	13903486	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	intron	13903487	13903583	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	CDS	13903584	13903625	1	-	2	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	exon	13903584	13903625	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	intron	13903626	13903723	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	CDS	13903724	13903784	1	-	0	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	exon	13903724	13903784	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	intron	13903785	13903852	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	CDS	13903853	13903912	1	-	0	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	exon	13903853	13903912	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	intron	13903913	13904014	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	CDS	13904015	13904081	1	-	1	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	exon	13904015	13904081	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	intron	13904082	13904162	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	CDS	13904163	13904235	1	-	2	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	exon	13904163	13904235	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	intron	13904236	13904336	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	CDS	13904337	13904490	1	-	0	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	exon	13904337	13904490	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	intron	13904491	13904579	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	CDS	13904580	13904738	0.98	-	0	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	exon	13904580	13904738	.	-	.	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
Ledus.S1	AUGUSTUS	start_codon	13904736	13904738	.	-	0	transcript_id "Ledus.S1G140100.t1"; gene_id "Ledus.S1G140100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8401.t1 is derived from g13073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11487324	11488601	.	+	.	Ledus.S5G117900
Ledus.S5	AUGUSTUS	transcript	11487324	11488601	.	+	.	transcript_id "Ledus.S5G117900.t1"; gene_id "Ledus.S5G117900"
Ledus.S5	AUGUSTUS	start_codon	11487324	11487326	.	+	0	transcript_id "Ledus.S5G117900.t1"; gene_id "Ledus.S5G117900"
Ledus.S5	AUGUSTUS	CDS	11487324	11488601	1	+	0	transcript_id "Ledus.S5G117900.t1"; gene_id "Ledus.S5G117900"
Ledus.S5	AUGUSTUS	exon	11487324	11488601	.	+	.	transcript_id "Ledus.S5G117900.t1"; gene_id "Ledus.S5G117900"
Ledus.S5	AUGUSTUS	stop_codon	11488602	11488604	.	+	0	transcript_id "Ledus.S5G117900.t1"; gene_id "Ledus.S5G117900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7986.t1 is derived from g12657.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8353536	8356516	.	-	.	Ledus.S5G076400
Ledus.S5	AUGUSTUS	transcript	8353536	8356516	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	stop_codon	8353533	8353535	.	-	0	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	CDS	8353536	8353601	1	-	0	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	exon	8353536	8353601	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	intron	8353602	8353699	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	CDS	8353700	8353777	1	-	0	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	exon	8353700	8353777	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	intron	8353778	8353888	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	CDS	8353889	8353943	0.99	-	1	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	exon	8353889	8353943	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	intron	8353944	8354056	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	CDS	8354057	8354220	1	-	0	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	exon	8354057	8354220	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	intron	8354221	8354354	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	CDS	8354355	8354435	1	-	0	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	exon	8354355	8354435	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	intron	8354436	8354666	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	CDS	8354667	8354734	1	-	2	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	exon	8354667	8354734	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	intron	8354735	8354870	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	CDS	8354871	8354999	1	-	2	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	exon	8354871	8354999	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	intron	8355000	8355142	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	CDS	8355143	8355228	1	-	1	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	exon	8355143	8355228	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	intron	8355229	8355348	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	CDS	8355349	8355446	1	-	0	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	exon	8355349	8355446	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	intron	8355447	8355565	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	CDS	8355566	8356052	0.45	-	1	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	exon	8355566	8356052	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	intron	8356053	8356311	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	CDS	8356312	8356339	0.96	-	2	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	exon	8356312	8356339	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	intron	8356340	8356416	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	CDS	8356417	8356516	1	-	0	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	exon	8356417	8356516	.	-	.	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
Ledus.S5	AUGUSTUS	start_codon	8356514	8356516	.	-	0	transcript_id "Ledus.S5G076400.t1"; gene_id "Ledus.S5G076400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9195.t1 is derived from g10225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5310307	5313801	.	-	.	Ledus.S3G067200
Ledus.S3	AUGUSTUS	transcript	5310307	5313801	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	stop_codon	5310304	5310306	.	-	0	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	CDS	5310307	5310522	0.98	-	0	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	exon	5310307	5310522	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	intron	5310523	5310688	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	CDS	5310689	5310929	0.75	-	1	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	exon	5310689	5310929	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	intron	5310930	5311050	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	CDS	5311051	5311163	0.65	-	0	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	exon	5311051	5311163	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	intron	5311164	5311269	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	CDS	5311270	5311463	0.68	-	2	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	exon	5311270	5311463	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	intron	5311464	5311610	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	CDS	5311611	5311867	1	-	1	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	exon	5311611	5311867	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	intron	5311868	5311971	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	CDS	5311972	5312149	0.99	-	2	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	exon	5311972	5312149	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	intron	5312150	5312251	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	CDS	5312252	5312394	1	-	1	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	exon	5312252	5312394	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	intron	5312395	5312513	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	CDS	5312514	5312683	1	-	0	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	exon	5312514	5312683	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	intron	5312684	5312874	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	CDS	5312875	5312970	1	-	0	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	exon	5312875	5312970	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	intron	5312971	5313270	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	CDS	5313271	5313502	0.94	-	1	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	exon	5313271	5313502	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	intron	5313503	5313616	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	CDS	5313617	5313801	0.89	-	0	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	exon	5313617	5313801	.	-	.	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
Ledus.S3	AUGUSTUS	start_codon	5313799	5313801	.	-	0	transcript_id "Ledus.S3G067200.t1"; gene_id "Ledus.S3G067200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6385.t1 is derived from g3828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30959676	30961596	.	+	.	Ledus.S1G380600
Ledus.S1	AUGUSTUS	transcript	30959676	30961596	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	start_codon	30959676	30959678	.	+	0	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	CDS	30959676	30959709	1	+	0	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	exon	30959676	30959709	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	intron	30959710	30959877	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	CDS	30959878	30960044	0.88	+	2	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	exon	30959878	30960044	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	intron	30960045	30960156	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	CDS	30960157	30960228	1	+	0	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	exon	30960157	30960228	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	intron	30960229	30960317	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	CDS	30960318	30960404	1	+	0	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	exon	30960318	30960404	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	intron	30960405	30960538	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	CDS	30960539	30960595	1	+	0	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	exon	30960539	30960595	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	intron	30960596	30960678	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	CDS	30960679	30960771	1	+	0	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	exon	30960679	30960771	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	intron	30960772	30960911	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	CDS	30960912	30960956	0.5	+	0	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	exon	30960912	30960956	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	intron	30960957	30961103	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	CDS	30961104	30961179	0.83	+	0	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	exon	30961104	30961179	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	intron	30961180	30961308	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	CDS	30961309	30961379	0.97	+	2	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	exon	30961309	30961379	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	intron	30961380	30961476	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	CDS	30961477	30961596	0.97	+	0	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	exon	30961477	30961596	.	+	.	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
Ledus.S1	AUGUSTUS	stop_codon	30961597	30961599	.	+	0	transcript_id "Ledus.S1G380600.t1"; gene_id "Ledus.S1G380600"
# This transcript jg10268.t2 is derived from g11298.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10268.t3 is derived from g11298.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10269.t1 is derived from g11299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13917836	13920181	.	+	.	Ledus.S3G174600
Ledus.S3	AUGUSTUS	transcript	13917836	13920181	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	start_codon	13917836	13917838	.	+	0	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	CDS	13917836	13917909	0.38	+	0	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	exon	13917836	13917909	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	intron	13917910	13918057	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	CDS	13918058	13918292	0.41	+	1	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	exon	13918058	13918292	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	intron	13918293	13918395	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	CDS	13918396	13918459	1	+	0	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	exon	13918396	13918459	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	intron	13918460	13918544	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	CDS	13918545	13918654	0.48	+	2	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	exon	13918545	13918654	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	intron	13918655	13918955	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	CDS	13918956	13919117	0.33	+	0	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	exon	13918956	13919117	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	intron	13919118	13919192	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	CDS	13919193	13919264	1	+	0	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	exon	13919193	13919264	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	intron	13919265	13919438	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	CDS	13919439	13919605	1	+	0	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	exon	13919439	13919605	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	intron	13919606	13919699	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	CDS	13919700	13919811	1	+	1	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	exon	13919700	13919811	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	intron	13919812	13920010	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	CDS	13920011	13920181	0.71	+	0	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	exon	13920011	13920181	.	+	.	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
Ledus.S3	AUGUSTUS	stop_codon	13920182	13920184	.	+	0	transcript_id "Ledus.S3G174600.t1"; gene_id "Ledus.S3G174600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9832.t1 is derived from g10862.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10353213	10353458	.	-	.	Ledus.S3G130900
Ledus.S3	AUGUSTUS	transcript	10353213	10353458	.	-	.	transcript_id "Ledus.S3G130900.t1"; gene_id "Ledus.S3G130900"
Ledus.S3	AUGUSTUS	stop_codon	10353210	10353212	.	-	0	transcript_id "Ledus.S3G130900.t1"; gene_id "Ledus.S3G130900"
Ledus.S3	AUGUSTUS	CDS	10353213	10353458	0.84	-	0	transcript_id "Ledus.S3G130900.t1"; gene_id "Ledus.S3G130900"
Ledus.S3	AUGUSTUS	exon	10353213	10353458	.	-	.	transcript_id "Ledus.S3G130900.t1"; gene_id "Ledus.S3G130900"
Ledus.S3	AUGUSTUS	start_codon	10353456	10353458	.	-	0	transcript_id "Ledus.S3G130900.t1"; gene_id "Ledus.S3G130900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3380.t1 is derived from g815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7967158	7970549	.	+	.	Ledus.S1G080100
Ledus.S1	AUGUSTUS	transcript	7967158	7970549	.	+	.	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	start_codon	7967158	7967160	.	+	0	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	CDS	7967158	7967376	0.97	+	0	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	exon	7967158	7967376	.	+	.	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	intron	7967377	7967479	.	+	.	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	CDS	7967480	7967653	0.99	+	0	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	exon	7967480	7967653	.	+	.	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	intron	7967654	7967836	.	+	.	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	CDS	7967837	7968151	1	+	0	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	exon	7967837	7968151	.	+	.	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	intron	7968152	7968270	.	+	.	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	CDS	7968271	7970100	1	+	0	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	exon	7968271	7970100	.	+	.	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	intron	7970101	7970186	.	+	.	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	CDS	7970187	7970549	1	+	0	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	exon	7970187	7970549	.	+	.	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
Ledus.S1	AUGUSTUS	stop_codon	7970550	7970552	.	+	0	transcript_id "Ledus.S1G080100.t1"; gene_id "Ledus.S1G080100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1043.t1 is derived from g7904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6933828	6937055	.	+	.	Ledus.S2G092500
Ledus.S2	AUGUSTUS	transcript	6933828	6937055	.	+	.	transcript_id "Ledus.S2G092500.t1"; gene_id "Ledus.S2G092500"
Ledus.S2	AUGUSTUS	start_codon	6933828	6933830	.	+	0	transcript_id "Ledus.S2G092500.t1"; gene_id "Ledus.S2G092500"
Ledus.S2	AUGUSTUS	CDS	6933828	6933842	0.53	+	0	transcript_id "Ledus.S2G092500.t1"; gene_id "Ledus.S2G092500"
Ledus.S2	AUGUSTUS	exon	6933828	6933842	.	+	.	transcript_id "Ledus.S2G092500.t1"; gene_id "Ledus.S2G092500"
Ledus.S2	AUGUSTUS	intron	6933843	6933922	.	+	.	transcript_id "Ledus.S2G092500.t1"; gene_id "Ledus.S2G092500"
Ledus.S2	AUGUSTUS	CDS	6933923	6934119	0.99	+	0	transcript_id "Ledus.S2G092500.t1"; gene_id "Ledus.S2G092500"
Ledus.S2	AUGUSTUS	exon	6933923	6934119	.	+	.	transcript_id "Ledus.S2G092500.t1"; gene_id "Ledus.S2G092500"
Ledus.S2	AUGUSTUS	intron	6934120	6934198	.	+	.	transcript_id "Ledus.S2G092500.t1"; gene_id "Ledus.S2G092500"
Ledus.S2	AUGUSTUS	CDS	6934199	6937055	0.55	+	1	transcript_id "Ledus.S2G092500.t1"; gene_id "Ledus.S2G092500"
Ledus.S2	AUGUSTUS	exon	6934199	6937055	.	+	.	transcript_id "Ledus.S2G092500.t1"; gene_id "Ledus.S2G092500"
Ledus.S2	AUGUSTUS	stop_codon	6937056	6937058	.	+	0	transcript_id "Ledus.S2G092500.t1"; gene_id "Ledus.S2G092500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9394.t1 is derived from g10424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6520334	6521793	.	-	.	Ledus.S3G087100
Ledus.S3	AUGUSTUS	transcript	6520334	6521793	.	-	.	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	stop_codon	6520331	6520333	.	-	0	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	CDS	6520334	6520423	1	-	0	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	exon	6520334	6520423	.	-	.	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	intron	6520424	6520501	.	-	.	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	CDS	6520502	6520600	1	-	0	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	exon	6520502	6520600	.	-	.	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	intron	6520601	6520687	.	-	.	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	CDS	6520688	6520869	1	-	2	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	exon	6520688	6520869	.	-	.	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	intron	6520870	6520946	.	-	.	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	CDS	6520947	6521047	1	-	1	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	exon	6520947	6521047	.	-	.	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	intron	6521048	6521153	.	-	.	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	CDS	6521154	6521314	0.59	-	0	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	exon	6521154	6521314	.	-	.	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	intron	6521315	6521502	.	-	.	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	CDS	6521503	6521793	0.67	-	0	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	exon	6521503	6521793	.	-	.	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
Ledus.S3	AUGUSTUS	start_codon	6521791	6521793	.	-	0	transcript_id "Ledus.S3G087100.t1"; gene_id "Ledus.S3G087100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2051.t1 is derived from g8914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14336689	14338314	.	-	.	Ledus.S2G193300
Ledus.S2	AUGUSTUS	transcript	14336689	14338314	.	-	.	transcript_id "Ledus.S2G193300.t1"; gene_id "Ledus.S2G193300"
Ledus.S2	AUGUSTUS	stop_codon	14336686	14336688	.	-	0	transcript_id "Ledus.S2G193300.t1"; gene_id "Ledus.S2G193300"
Ledus.S2	AUGUSTUS	CDS	14336689	14338314	0.94	-	0	transcript_id "Ledus.S2G193300.t1"; gene_id "Ledus.S2G193300"
Ledus.S2	AUGUSTUS	exon	14336689	14338314	.	-	.	transcript_id "Ledus.S2G193300.t1"; gene_id "Ledus.S2G193300"
Ledus.S2	AUGUSTUS	start_codon	14338312	14338314	.	-	0	transcript_id "Ledus.S2G193300.t1"; gene_id "Ledus.S2G193300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11479.t1 is derived from g5097.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4669475	4676191	.	+	.	Ledus.S4G063500
Ledus.S4	AUGUSTUS	transcript	4669475	4676191	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	start_codon	4669475	4669477	.	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4669475	4669663	1	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4669475	4669663	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4669664	4669736	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4669737	4669947	1	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4669737	4669947	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4669948	4670022	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4670023	4670095	1	+	2	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4670023	4670095	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4670096	4670182	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4670183	4670327	0.66	+	1	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4670183	4670327	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4670328	4670532	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4670533	4670639	0.82	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4670533	4670639	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4670640	4670773	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4670774	4670911	1	+	1	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4670774	4670911	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4670912	4671077	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4671078	4671210	0.71	+	1	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4671078	4671210	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4671211	4671298	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4671299	4671433	0.6	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4671299	4671433	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4671434	4671562	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4671563	4671720	0.92	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4671563	4671720	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4671721	4671833	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4671834	4671908	0.9	+	1	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4671834	4671908	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4671909	4672021	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4672022	4672157	0.95	+	1	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4672022	4672157	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4672158	4672274	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4672275	4672559	0.96	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4672275	4672559	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4672560	4672667	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4672668	4672715	0.37	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4672668	4672715	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4672716	4673114	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4673115	4673253	0.38	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4673115	4673253	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4673254	4673365	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4673366	4673419	1	+	2	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4673366	4673419	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4673420	4673615	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4673616	4673780	1	+	2	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4673616	4673780	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4673781	4674001	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4674002	4674117	0.97	+	2	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4674002	4674117	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4674118	4674219	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4674220	4674246	0.94	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4674220	4674246	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4674247	4674398	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4674399	4674560	0.99	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4674399	4674560	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4674561	4674648	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4674649	4674742	0.75	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4674649	4674742	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4674743	4674889	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4674890	4675046	0.77	+	2	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4674890	4675046	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4675047	4675202	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4675203	4675302	1	+	1	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4675203	4675302	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4675303	4675399	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4675400	4675448	1	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4675400	4675448	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4675449	4675556	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4675557	4675688	1	+	2	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4675557	4675688	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4675689	4675828	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4675829	4675923	1	+	2	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4675829	4675923	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4675924	4676023	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4676024	4676191	1	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4676024	4676191	.	+	.	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	stop_codon	4676192	4676194	.	+	0	transcript_id "Ledus.S4G063500.t1"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	transcript	4669475	4676191	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	start_codon	4669475	4669477	.	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4669475	4669663	1	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4669475	4669663	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4669664	4669736	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4669737	4669947	1	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4669737	4669947	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4669948	4670022	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4670023	4670095	1	+	2	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4670023	4670095	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4670096	4670182	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4670183	4670327	0.61	+	1	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4670183	4670327	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4670328	4670532	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4670533	4670639	0.74	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4670533	4670639	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4670640	4670773	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4670774	4670911	0.99	+	1	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4670774	4670911	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4670912	4671077	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4671078	4671210	0.64	+	1	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4671078	4671210	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4671211	4671298	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4671299	4671433	0.51	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4671299	4671433	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4671434	4671562	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4671563	4671720	0.92	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4671563	4671720	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4671721	4671833	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4671834	4671908	0.88	+	1	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4671834	4671908	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4671909	4672021	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4672022	4672157	0.96	+	1	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4672022	4672157	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4672158	4672274	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4672275	4672559	0.95	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4672275	4672559	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4672560	4672667	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4672668	4672715	0.42	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4672668	4672715	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4672716	4673114	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4673115	4673253	0.42	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4673115	4673253	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4673254	4673365	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4673366	4673419	1	+	2	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4673366	4673419	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4673420	4673615	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4673616	4673780	1	+	2	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4673616	4673780	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4673781	4674001	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4674002	4674117	1	+	2	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4674002	4674117	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4674118	4674230	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4674231	4674246	1	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4674231	4674246	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4674247	4674402	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4674403	4674560	1	+	2	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4674403	4674560	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4674561	4674648	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4674649	4674742	0.72	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4674649	4674742	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4674743	4674889	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4674890	4675046	0.74	+	2	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4674890	4675046	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4675047	4675202	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4675203	4675302	1	+	1	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4675203	4675302	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4675303	4675399	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4675400	4675448	0.99	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4675400	4675448	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4675449	4675556	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4675557	4675688	0.98	+	2	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4675557	4675688	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4675689	4675828	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4675829	4675923	1	+	2	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4675829	4675923	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	intron	4675924	4676023	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	CDS	4676024	4676191	1	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	exon	4676024	4676191	.	+	.	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
Ledus.S4	AUGUSTUS	stop_codon	4676192	4676194	.	+	0	transcript_id "Ledus.S4G063500.t2"; gene_id "Ledus.S4G063500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7169.t1 is derived from g6700.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1940527	1943012	.	+	.	Ledus.C7G023000
Ledus.C7	AUGUSTUS	transcript	1940527	1943012	.	+	.	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	start_codon	1940527	1940529	.	+	0	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	CDS	1940527	1940855	0.99	+	0	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	exon	1940527	1940855	.	+	.	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	intron	1940856	1940944	.	+	.	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	CDS	1940945	1941197	1	+	1	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	exon	1940945	1941197	.	+	.	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	intron	1941198	1941302	.	+	.	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	CDS	1941303	1942151	0.99	+	0	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	exon	1941303	1942151	.	+	.	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	intron	1942152	1942229	.	+	.	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	CDS	1942230	1942476	1	+	0	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	exon	1942230	1942476	.	+	.	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	intron	1942477	1942569	.	+	.	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	CDS	1942570	1943012	0.98	+	2	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	exon	1942570	1943012	.	+	.	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
Ledus.C7	AUGUSTUS	stop_codon	1943013	1943015	.	+	0	transcript_id "Ledus.C7G023000.t1"; gene_id "Ledus.C7G023000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8912.t1 is derived from g9942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3073279	3073887	.	+	.	Ledus.S3G038900
Ledus.S3	AUGUSTUS	transcript	3073279	3073887	.	+	.	transcript_id "Ledus.S3G038900.t1"; gene_id "Ledus.S3G038900"
Ledus.S3	AUGUSTUS	start_codon	3073279	3073281	.	+	0	transcript_id "Ledus.S3G038900.t1"; gene_id "Ledus.S3G038900"
Ledus.S3	AUGUSTUS	CDS	3073279	3073887	0.93	+	0	transcript_id "Ledus.S3G038900.t1"; gene_id "Ledus.S3G038900"
Ledus.S3	AUGUSTUS	exon	3073279	3073887	.	+	.	transcript_id "Ledus.S3G038900.t1"; gene_id "Ledus.S3G038900"
Ledus.S3	AUGUSTUS	stop_codon	3073888	3073890	.	+	0	transcript_id "Ledus.S3G038900.t1"; gene_id "Ledus.S3G038900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1248.t1 is derived from g8109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8858479	8862721	.	-	.	Ledus.S2G113000
Ledus.S2	AUGUSTUS	transcript	8858479	8862721	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	stop_codon	8858476	8858478	.	-	0	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8858479	8858661	1	-	0	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8858479	8858661	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8858662	8858743	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8858744	8858917	1	-	0	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8858744	8858917	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8858918	8859007	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8859008	8859206	1	-	1	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8859008	8859206	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8859207	8859319	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8859320	8859419	0.99	-	2	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8859320	8859419	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8859420	8859501	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8859502	8859580	1	-	0	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8859502	8859580	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8859581	8859660	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8859661	8859771	1	-	0	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8859661	8859771	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8859772	8859847	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8859848	8859939	0.63	-	2	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8859848	8859939	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8859940	8860092	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8860093	8860188	0.56	-	2	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8860093	8860188	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8860189	8860537	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8860538	8860634	0.6	-	0	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8860538	8860634	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8860635	8860742	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8860743	8860805	0.94	-	0	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8860743	8860805	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8860806	8860894	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8860895	8861080	1	-	0	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8860895	8861080	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8861081	8861190	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8861191	8861307	1	-	0	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8861191	8861307	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8861308	8861407	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8861408	8861545	1	-	0	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8861408	8861545	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8861546	8861647	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8861648	8861996	1	-	1	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8861648	8861996	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8861997	8862099	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8862100	8862217	0.99	-	2	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8862100	8862217	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8862218	8862330	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8862331	8862516	1	-	2	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8862331	8862516	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	intron	8862517	8862606	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	CDS	8862607	8862721	0.66	-	0	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	exon	8862607	8862721	.	-	.	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
Ledus.S2	AUGUSTUS	start_codon	8862719	8862721	.	-	0	transcript_id "Ledus.S2G113000.t1"; gene_id "Ledus.S2G113000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8663.t1 is derived from g9693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1238128	1238424	.	-	.	Ledus.S3G014000
Ledus.S3	AUGUSTUS	transcript	1238128	1238424	.	-	.	transcript_id "Ledus.S3G014000.t1"; gene_id "Ledus.S3G014000"
Ledus.S3	AUGUSTUS	stop_codon	1238125	1238127	.	-	0	transcript_id "Ledus.S3G014000.t1"; gene_id "Ledus.S3G014000"
Ledus.S3	AUGUSTUS	CDS	1238128	1238424	0.55	-	0	transcript_id "Ledus.S3G014000.t1"; gene_id "Ledus.S3G014000"
Ledus.S3	AUGUSTUS	exon	1238128	1238424	.	-	.	transcript_id "Ledus.S3G014000.t1"; gene_id "Ledus.S3G014000"
Ledus.S3	AUGUSTUS	start_codon	1238422	1238424	.	-	0	transcript_id "Ledus.S3G014000.t1"; gene_id "Ledus.S3G014000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11043.t1 is derived from g4661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1373394	1374193	.	+	.	Ledus.S4G019900
Ledus.S4	AUGUSTUS	transcript	1373394	1374193	.	+	.	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	start_codon	1373394	1373396	.	+	0	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	CDS	1373394	1373535	1	+	0	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	exon	1373394	1373535	.	+	.	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	intron	1373536	1373628	.	+	.	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	CDS	1373629	1373819	1	+	2	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	exon	1373629	1373819	.	+	.	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	intron	1373820	1373896	.	+	.	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	CDS	1373897	1373969	1	+	0	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	exon	1373897	1373969	.	+	.	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	intron	1373970	1374110	.	+	.	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	CDS	1374111	1374193	0.51	+	2	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	exon	1374111	1374193	.	+	.	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
Ledus.S4	AUGUSTUS	stop_codon	1374194	1374196	.	+	0	transcript_id "Ledus.S4G019900.t1"; gene_id "Ledus.S4G019900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6475.t1 is derived from g3918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31477266	31478202	.	-	.	Ledus.S1G389600
Ledus.S1	AUGUSTUS	transcript	31477266	31478202	.	-	.	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	stop_codon	31477263	31477265	.	-	0	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	CDS	31477266	31477347	0.44	-	1	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	exon	31477266	31477347	.	-	.	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	intron	31477348	31477720	.	-	.	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	CDS	31477721	31477771	0.65	-	1	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	exon	31477721	31477771	.	-	.	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	intron	31477772	31477887	.	-	.	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	CDS	31477888	31478079	0.21	-	1	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	exon	31477888	31478079	.	-	.	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	intron	31478080	31478176	.	-	.	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	CDS	31478177	31478202	0.72	-	0	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	exon	31478177	31478202	.	-	.	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
Ledus.S1	AUGUSTUS	start_codon	31478200	31478202	.	-	0	transcript_id "Ledus.S1G389600.t1"; gene_id "Ledus.S1G389600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7065.t1 is derived from g6596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1165059	1167822	.	-	.	Ledus.C7G012600
Ledus.C7	AUGUSTUS	transcript	1165059	1167822	.	-	.	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	stop_codon	1165056	1165058	.	-	0	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	CDS	1165059	1167286	0.96	-	2	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	exon	1165059	1167286	.	-	.	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	intron	1167287	1167373	.	-	.	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	CDS	1167374	1167442	0.54	-	2	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	exon	1167374	1167442	.	-	.	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	intron	1167443	1167535	.	-	.	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	CDS	1167536	1167612	0.54	-	1	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	exon	1167536	1167612	.	-	.	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	intron	1167613	1167703	.	-	.	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	CDS	1167704	1167822	0.63	-	0	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	exon	1167704	1167822	.	-	.	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
Ledus.C7	AUGUSTUS	start_codon	1167820	1167822	.	-	0	transcript_id "Ledus.C7G012600.t1"; gene_id "Ledus.C7G012600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2858.t1 is derived from g292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4220428	4221531	.	+	.	Ledus.S1G027900
Ledus.S1	AUGUSTUS	transcript	4220428	4221531	.	+	.	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	start_codon	4220428	4220430	.	+	0	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	CDS	4220428	4220700	0.7	+	0	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	exon	4220428	4220700	.	+	.	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	intron	4220701	4220804	.	+	.	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	CDS	4220805	4220906	1	+	0	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	exon	4220805	4220906	.	+	.	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	intron	4220907	4221027	.	+	.	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	CDS	4221028	4221178	0.69	+	0	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	exon	4221028	4221178	.	+	.	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	intron	4221179	4221314	.	+	.	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	CDS	4221315	4221400	0.76	+	2	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	exon	4221315	4221400	.	+	.	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	intron	4221401	4221492	.	+	.	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	CDS	4221493	4221531	1	+	0	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	exon	4221493	4221531	.	+	.	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
Ledus.S1	AUGUSTUS	stop_codon	4221532	4221534	.	+	0	transcript_id "Ledus.S1G027900.t1"; gene_id "Ledus.S1G027900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg439.t1 is derived from g7300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2568396	2568738	.	-	.	Ledus.S2G032100
Ledus.S2	AUGUSTUS	transcript	2568396	2568738	.	-	.	transcript_id "Ledus.S2G032100.t1"; gene_id "Ledus.S2G032100"
Ledus.S2	AUGUSTUS	stop_codon	2568393	2568395	.	-	0	transcript_id "Ledus.S2G032100.t1"; gene_id "Ledus.S2G032100"
Ledus.S2	AUGUSTUS	CDS	2568396	2568624	0.72	-	1	transcript_id "Ledus.S2G032100.t1"; gene_id "Ledus.S2G032100"
Ledus.S2	AUGUSTUS	exon	2568396	2568624	.	-	.	transcript_id "Ledus.S2G032100.t1"; gene_id "Ledus.S2G032100"
Ledus.S2	AUGUSTUS	intron	2568625	2568718	.	-	.	transcript_id "Ledus.S2G032100.t1"; gene_id "Ledus.S2G032100"
Ledus.S2	AUGUSTUS	CDS	2568719	2568738	1	-	0	transcript_id "Ledus.S2G032100.t1"; gene_id "Ledus.S2G032100"
Ledus.S2	AUGUSTUS	exon	2568719	2568738	.	-	.	transcript_id "Ledus.S2G032100.t1"; gene_id "Ledus.S2G032100"
Ledus.S2	AUGUSTUS	start_codon	2568736	2568738	.	-	0	transcript_id "Ledus.S2G032100.t1"; gene_id "Ledus.S2G032100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13079.t1 is derived from g6889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5159140	5159439	.	+	.	Ledus.S6G014100
Ledus.S6	AUGUSTUS	transcript	5159140	5159439	.	+	.	transcript_id "Ledus.S6G014100.t1"; gene_id "Ledus.S6G014100"
Ledus.S6	AUGUSTUS	start_codon	5159140	5159142	.	+	0	transcript_id "Ledus.S6G014100.t1"; gene_id "Ledus.S6G014100"
Ledus.S6	AUGUSTUS	CDS	5159140	5159439	0.7	+	0	transcript_id "Ledus.S6G014100.t1"; gene_id "Ledus.S6G014100"
Ledus.S6	AUGUSTUS	exon	5159140	5159439	.	+	.	transcript_id "Ledus.S6G014100.t1"; gene_id "Ledus.S6G014100"
Ledus.S6	AUGUSTUS	stop_codon	5159440	5159442	.	+	0	transcript_id "Ledus.S6G014100.t1"; gene_id "Ledus.S6G014100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11382.t1 is derived from g5000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3893407	3895335	.	+	.	Ledus.S4G053800
Ledus.S4	AUGUSTUS	transcript	3893407	3895335	.	+	.	transcript_id "Ledus.S4G053800.t1"; gene_id "Ledus.S4G053800"
Ledus.S4	AUGUSTUS	start_codon	3893407	3893409	.	+	0	transcript_id "Ledus.S4G053800.t1"; gene_id "Ledus.S4G053800"
Ledus.S4	AUGUSTUS	CDS	3893407	3895335	0.96	+	0	transcript_id "Ledus.S4G053800.t1"; gene_id "Ledus.S4G053800"
Ledus.S4	AUGUSTUS	exon	3893407	3895335	.	+	.	transcript_id "Ledus.S4G053800.t1"; gene_id "Ledus.S4G053800"
Ledus.S4	AUGUSTUS	stop_codon	3895336	3895338	.	+	0	transcript_id "Ledus.S4G053800.t1"; gene_id "Ledus.S4G053800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3136.t1 is derived from g571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6190667	6191050	.	+	.	Ledus.S1G055700
Ledus.S1	AUGUSTUS	transcript	6190667	6191050	.	+	.	transcript_id "Ledus.S1G055700.t1"; gene_id "Ledus.S1G055700"
Ledus.S1	AUGUSTUS	start_codon	6190667	6190669	.	+	0	transcript_id "Ledus.S1G055700.t1"; gene_id "Ledus.S1G055700"
Ledus.S1	AUGUSTUS	CDS	6190667	6190675	0.39	+	0	transcript_id "Ledus.S1G055700.t1"; gene_id "Ledus.S1G055700"
Ledus.S1	AUGUSTUS	exon	6190667	6190675	.	+	.	transcript_id "Ledus.S1G055700.t1"; gene_id "Ledus.S1G055700"
Ledus.S1	AUGUSTUS	intron	6190676	6190786	.	+	.	transcript_id "Ledus.S1G055700.t1"; gene_id "Ledus.S1G055700"
Ledus.S1	AUGUSTUS	CDS	6190787	6191050	0.86	+	0	transcript_id "Ledus.S1G055700.t1"; gene_id "Ledus.S1G055700"
Ledus.S1	AUGUSTUS	exon	6190787	6191050	.	+	.	transcript_id "Ledus.S1G055700.t1"; gene_id "Ledus.S1G055700"
Ledus.S1	AUGUSTUS	stop_codon	6191051	6191053	.	+	0	transcript_id "Ledus.S1G055700.t1"; gene_id "Ledus.S1G055700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11120.t1 is derived from g4738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1969583	1970043	.	-	.	Ledus.S4G027600
Ledus.S4	AUGUSTUS	transcript	1969583	1970043	.	-	.	transcript_id "Ledus.S4G027600.t1"; gene_id "Ledus.S4G027600"
Ledus.S4	AUGUSTUS	stop_codon	1969580	1969582	.	-	0	transcript_id "Ledus.S4G027600.t1"; gene_id "Ledus.S4G027600"
Ledus.S4	AUGUSTUS	CDS	1969583	1969771	0.36	-	0	transcript_id "Ledus.S4G027600.t1"; gene_id "Ledus.S4G027600"
Ledus.S4	AUGUSTUS	exon	1969583	1969771	.	-	.	transcript_id "Ledus.S4G027600.t1"; gene_id "Ledus.S4G027600"
Ledus.S4	AUGUSTUS	intron	1969772	1969875	.	-	.	transcript_id "Ledus.S4G027600.t1"; gene_id "Ledus.S4G027600"
Ledus.S4	AUGUSTUS	CDS	1969876	1970043	0.32	-	0	transcript_id "Ledus.S4G027600.t1"; gene_id "Ledus.S4G027600"
Ledus.S4	AUGUSTUS	exon	1969876	1970043	.	-	.	transcript_id "Ledus.S4G027600.t1"; gene_id "Ledus.S4G027600"
Ledus.S4	AUGUSTUS	start_codon	1970041	1970043	.	-	0	transcript_id "Ledus.S4G027600.t1"; gene_id "Ledus.S4G027600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7147.t1 is derived from g6678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1771249	1772017	.	-	.	Ledus.C7G020800
Ledus.C7	AUGUSTUS	transcript	1771249	1772017	.	-	.	transcript_id "Ledus.C7G020800.t1"; gene_id "Ledus.C7G020800"
Ledus.C7	AUGUSTUS	stop_codon	1771246	1771248	.	-	0	transcript_id "Ledus.C7G020800.t1"; gene_id "Ledus.C7G020800"
Ledus.C7	AUGUSTUS	CDS	1771249	1771469	0.77	-	2	transcript_id "Ledus.C7G020800.t1"; gene_id "Ledus.C7G020800"
Ledus.C7	AUGUSTUS	exon	1771249	1771469	.	-	.	transcript_id "Ledus.C7G020800.t1"; gene_id "Ledus.C7G020800"
Ledus.C7	AUGUSTUS	intron	1771470	1771890	.	-	.	transcript_id "Ledus.C7G020800.t1"; gene_id "Ledus.C7G020800"
Ledus.C7	AUGUSTUS	CDS	1771891	1772017	0.81	-	0	transcript_id "Ledus.C7G020800.t1"; gene_id "Ledus.C7G020800"
Ledus.C7	AUGUSTUS	exon	1771891	1772017	.	-	.	transcript_id "Ledus.C7G020800.t1"; gene_id "Ledus.C7G020800"
Ledus.C7	AUGUSTUS	start_codon	1772015	1772017	.	-	0	transcript_id "Ledus.C7G020800.t1"; gene_id "Ledus.C7G020800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2139.t1 is derived from g9002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15061854	15062425	.	-	.	Ledus.S2G202100
Ledus.S2	AUGUSTUS	transcript	15061854	15062425	.	-	.	transcript_id "Ledus.S2G202100.t1"; gene_id "Ledus.S2G202100"
Ledus.S2	AUGUSTUS	stop_codon	15061851	15061853	.	-	0	transcript_id "Ledus.S2G202100.t1"; gene_id "Ledus.S2G202100"
Ledus.S2	AUGUSTUS	CDS	15061854	15062142	0.43	-	1	transcript_id "Ledus.S2G202100.t1"; gene_id "Ledus.S2G202100"
Ledus.S2	AUGUSTUS	exon	15061854	15062142	.	-	.	transcript_id "Ledus.S2G202100.t1"; gene_id "Ledus.S2G202100"
Ledus.S2	AUGUSTUS	intron	15062143	15062330	.	-	.	transcript_id "Ledus.S2G202100.t1"; gene_id "Ledus.S2G202100"
Ledus.S2	AUGUSTUS	CDS	15062331	15062425	0.58	-	0	transcript_id "Ledus.S2G202100.t1"; gene_id "Ledus.S2G202100"
Ledus.S2	AUGUSTUS	exon	15062331	15062425	.	-	.	transcript_id "Ledus.S2G202100.t1"; gene_id "Ledus.S2G202100"
Ledus.S2	AUGUSTUS	start_codon	15062423	15062425	.	-	0	transcript_id "Ledus.S2G202100.t1"; gene_id "Ledus.S2G202100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3882.t1 is derived from g1318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13370496	13371782	.	+	.	Ledus.S1G130300
Ledus.S1	AUGUSTUS	transcript	13370496	13371782	.	+	.	transcript_id "Ledus.S1G130300.t1"; gene_id "Ledus.S1G130300"
Ledus.S1	AUGUSTUS	start_codon	13370496	13370498	.	+	0	transcript_id "Ledus.S1G130300.t1"; gene_id "Ledus.S1G130300"
Ledus.S1	AUGUSTUS	CDS	13370496	13370605	0.28	+	0	transcript_id "Ledus.S1G130300.t1"; gene_id "Ledus.S1G130300"
Ledus.S1	AUGUSTUS	exon	13370496	13370605	.	+	.	transcript_id "Ledus.S1G130300.t1"; gene_id "Ledus.S1G130300"
Ledus.S1	AUGUSTUS	intron	13370606	13370839	.	+	.	transcript_id "Ledus.S1G130300.t1"; gene_id "Ledus.S1G130300"
Ledus.S1	AUGUSTUS	CDS	13370840	13371782	0.82	+	1	transcript_id "Ledus.S1G130300.t1"; gene_id "Ledus.S1G130300"
Ledus.S1	AUGUSTUS	exon	13370840	13371782	.	+	.	transcript_id "Ledus.S1G130300.t1"; gene_id "Ledus.S1G130300"
Ledus.S1	AUGUSTUS	stop_codon	13371783	13371785	.	+	0	transcript_id "Ledus.S1G130300.t1"; gene_id "Ledus.S1G130300"
# This transcript jg3120.t2 is derived from g555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3120.t3 is derived from g555.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3120.t4 is derived from g555.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3121.t1 is derived from g556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6145021	6146313	.	+	.	Ledus.S1G054200
Ledus.S1	AUGUSTUS	transcript	6145021	6146313	.	+	.	transcript_id "Ledus.S1G054200.t1"; gene_id "Ledus.S1G054200"
Ledus.S1	AUGUSTUS	start_codon	6145021	6145023	.	+	0	transcript_id "Ledus.S1G054200.t1"; gene_id "Ledus.S1G054200"
Ledus.S1	AUGUSTUS	CDS	6145021	6146313	1	+	0	transcript_id "Ledus.S1G054200.t1"; gene_id "Ledus.S1G054200"
Ledus.S1	AUGUSTUS	exon	6145021	6146313	.	+	.	transcript_id "Ledus.S1G054200.t1"; gene_id "Ledus.S1G054200"
Ledus.S1	AUGUSTUS	stop_codon	6146314	6146316	.	+	0	transcript_id "Ledus.S1G054200.t1"; gene_id "Ledus.S1G054200"
Ledus.S1	AUGUSTUS	transcript	6145162	6146313	.	+	.	transcript_id "Ledus.S1G054200.t2"; gene_id "Ledus.S1G054200"
Ledus.S1	AUGUSTUS	start_codon	6145162	6145164	.	+	0	transcript_id "Ledus.S1G054200.t2"; gene_id "Ledus.S1G054200"
Ledus.S1	AUGUSTUS	CDS	6145162	6146313	0.87	+	0	transcript_id "Ledus.S1G054200.t2"; gene_id "Ledus.S1G054200"
Ledus.S1	AUGUSTUS	exon	6145162	6146313	.	+	.	transcript_id "Ledus.S1G054200.t2"; gene_id "Ledus.S1G054200"
Ledus.S1	AUGUSTUS	stop_codon	6146314	6146316	.	+	0	transcript_id "Ledus.S1G054200.t2"; gene_id "Ledus.S1G054200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10420.t1 is derived from g11450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15047910	15050144	.	+	.	Ledus.S3G189700
Ledus.S3	AUGUSTUS	transcript	15047910	15050144	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	start_codon	15047910	15047912	.	+	0	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	CDS	15047910	15048044	0.48	+	0	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	exon	15047910	15048044	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	intron	15048045	15048246	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	CDS	15048247	15048347	0.85	+	0	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	exon	15048247	15048347	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	intron	15048348	15048449	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	CDS	15048450	15048550	0.88	+	1	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	exon	15048450	15048550	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	intron	15048551	15048671	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	CDS	15048672	15048738	0.7	+	2	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	exon	15048672	15048738	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	intron	15048739	15048846	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	CDS	15048847	15048946	0.99	+	1	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	exon	15048847	15048946	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	intron	15048947	15049117	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	CDS	15049118	15049234	1	+	0	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	exon	15049118	15049234	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	intron	15049235	15049363	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	CDS	15049364	15049501	1	+	0	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	exon	15049364	15049501	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	intron	15049502	15049670	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	CDS	15049671	15049755	1	+	0	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	exon	15049671	15049755	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	intron	15049756	15049854	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	CDS	15049855	15049904	1	+	2	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	exon	15049855	15049904	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	intron	15049905	15050003	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	CDS	15050004	15050144	1	+	0	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	exon	15050004	15050144	.	+	.	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
Ledus.S3	AUGUSTUS	stop_codon	15050145	15050147	.	+	0	transcript_id "Ledus.S3G189700.t1"; gene_id "Ledus.S3G189700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2074.t1 is derived from g8937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14518145	14518791	.	+	.	Ledus.S2G195600
Ledus.S2	AUGUSTUS	transcript	14518145	14518791	.	+	.	transcript_id "Ledus.S2G195600.t1"; gene_id "Ledus.S2G195600"
Ledus.S2	AUGUSTUS	start_codon	14518145	14518147	.	+	0	transcript_id "Ledus.S2G195600.t1"; gene_id "Ledus.S2G195600"
Ledus.S2	AUGUSTUS	CDS	14518145	14518369	0.44	+	0	transcript_id "Ledus.S2G195600.t1"; gene_id "Ledus.S2G195600"
Ledus.S2	AUGUSTUS	exon	14518145	14518369	.	+	.	transcript_id "Ledus.S2G195600.t1"; gene_id "Ledus.S2G195600"
Ledus.S2	AUGUSTUS	intron	14518370	14518593	.	+	.	transcript_id "Ledus.S2G195600.t1"; gene_id "Ledus.S2G195600"
Ledus.S2	AUGUSTUS	CDS	14518594	14518791	0.64	+	0	transcript_id "Ledus.S2G195600.t1"; gene_id "Ledus.S2G195600"
Ledus.S2	AUGUSTUS	exon	14518594	14518791	.	+	.	transcript_id "Ledus.S2G195600.t1"; gene_id "Ledus.S2G195600"
Ledus.S2	AUGUSTUS	stop_codon	14518792	14518794	.	+	0	transcript_id "Ledus.S2G195600.t1"; gene_id "Ledus.S2G195600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg121.t1 is derived from g6982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	28749	28964	.	+	.	Ledus.S2G000300
Ledus.S2	AUGUSTUS	transcript	28749	28964	.	+	.	transcript_id "Ledus.S2G000300.t1"; gene_id "Ledus.S2G000300"
Ledus.S2	AUGUSTUS	start_codon	28749	28751	.	+	0	transcript_id "Ledus.S2G000300.t1"; gene_id "Ledus.S2G000300"
Ledus.S2	AUGUSTUS	CDS	28749	28964	0.79	+	0	transcript_id "Ledus.S2G000300.t1"; gene_id "Ledus.S2G000300"
Ledus.S2	AUGUSTUS	exon	28749	28964	.	+	.	transcript_id "Ledus.S2G000300.t1"; gene_id "Ledus.S2G000300"
Ledus.S2	AUGUSTUS	stop_codon	28965	28967	.	+	0	transcript_id "Ledus.S2G000300.t1"; gene_id "Ledus.S2G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11060.t1 is derived from g4678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1526681	1528487	.	+	.	Ledus.S4G021600
Ledus.S4	AUGUSTUS	transcript	1526681	1528487	.	+	.	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	start_codon	1526681	1526683	.	+	0	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	CDS	1526681	1526698	1	+	0	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	exon	1526681	1526698	.	+	.	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	intron	1526699	1526856	.	+	.	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	CDS	1526857	1527119	1	+	0	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	exon	1526857	1527119	.	+	.	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	intron	1527120	1527293	.	+	.	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	CDS	1527294	1527438	0.95	+	1	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	exon	1527294	1527438	.	+	.	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	intron	1527439	1527556	.	+	.	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	CDS	1527557	1527656	1	+	0	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	exon	1527557	1527656	.	+	.	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	intron	1527657	1527779	.	+	.	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	CDS	1527780	1528008	1	+	2	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	exon	1527780	1528008	.	+	.	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	intron	1528009	1528318	.	+	.	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	CDS	1528319	1528487	0.63	+	1	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	exon	1528319	1528487	.	+	.	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
Ledus.S4	AUGUSTUS	stop_codon	1528488	1528490	.	+	0	transcript_id "Ledus.S4G021600.t1"; gene_id "Ledus.S4G021600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12815.t1 is derived from g6437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15021155	15021460	.	-	.	Ledus.S4G197100
Ledus.S4	AUGUSTUS	transcript	15021155	15021460	.	-	.	transcript_id "Ledus.S4G197100.t1"; gene_id "Ledus.S4G197100"
Ledus.S4	AUGUSTUS	stop_codon	15021152	15021154	.	-	0	transcript_id "Ledus.S4G197100.t1"; gene_id "Ledus.S4G197100"
Ledus.S4	AUGUSTUS	CDS	15021155	15021460	0.97	-	0	transcript_id "Ledus.S4G197100.t1"; gene_id "Ledus.S4G197100"
Ledus.S4	AUGUSTUS	exon	15021155	15021460	.	-	.	transcript_id "Ledus.S4G197100.t1"; gene_id "Ledus.S4G197100"
Ledus.S4	AUGUSTUS	start_codon	15021458	15021460	.	-	0	transcript_id "Ledus.S4G197100.t1"; gene_id "Ledus.S4G197100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12122.t1 is derived from g5741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9644663	9646701	.	-	.	Ledus.S4G127800
Ledus.S4	AUGUSTUS	transcript	9644663	9646701	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	stop_codon	9644660	9644662	.	-	0	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	CDS	9644663	9644776	1	-	0	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	exon	9644663	9644776	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	intron	9644777	9644869	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	CDS	9644870	9644983	1	-	0	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	exon	9644870	9644983	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	intron	9644984	9645079	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	CDS	9645080	9645205	1	-	0	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	exon	9645080	9645205	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	intron	9645206	9645354	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	CDS	9645355	9645434	1	-	2	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	exon	9645355	9645434	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	intron	9645435	9645526	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	CDS	9645527	9645608	1	-	0	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	exon	9645527	9645608	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	intron	9645609	9645799	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	CDS	9645800	9645874	1	-	0	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	exon	9645800	9645874	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	intron	9645875	9646452	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	CDS	9646453	9646701	0.95	-	0	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	exon	9646453	9646701	.	-	.	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
Ledus.S4	AUGUSTUS	start_codon	9646699	9646701	.	-	0	transcript_id "Ledus.S4G127800.t1"; gene_id "Ledus.S4G127800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8574.t1 is derived from g9604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	267723	268396	.	+	.	Ledus.S3G005100
Ledus.S3	AUGUSTUS	transcript	267723	268396	.	+	.	transcript_id "Ledus.S3G005100.t1"; gene_id "Ledus.S3G005100"
Ledus.S3	AUGUSTUS	start_codon	267723	267725	.	+	0	transcript_id "Ledus.S3G005100.t1"; gene_id "Ledus.S3G005100"
Ledus.S3	AUGUSTUS	CDS	267723	267909	0.69	+	0	transcript_id "Ledus.S3G005100.t1"; gene_id "Ledus.S3G005100"
Ledus.S3	AUGUSTUS	exon	267723	267909	.	+	.	transcript_id "Ledus.S3G005100.t1"; gene_id "Ledus.S3G005100"
Ledus.S3	AUGUSTUS	intron	267910	268094	.	+	.	transcript_id "Ledus.S3G005100.t1"; gene_id "Ledus.S3G005100"
Ledus.S3	AUGUSTUS	CDS	268095	268212	0.6	+	2	transcript_id "Ledus.S3G005100.t1"; gene_id "Ledus.S3G005100"
Ledus.S3	AUGUSTUS	exon	268095	268212	.	+	.	transcript_id "Ledus.S3G005100.t1"; gene_id "Ledus.S3G005100"
Ledus.S3	AUGUSTUS	intron	268213	268326	.	+	.	transcript_id "Ledus.S3G005100.t1"; gene_id "Ledus.S3G005100"
Ledus.S3	AUGUSTUS	CDS	268327	268396	0.56	+	1	transcript_id "Ledus.S3G005100.t1"; gene_id "Ledus.S3G005100"
Ledus.S3	AUGUSTUS	exon	268327	268396	.	+	.	transcript_id "Ledus.S3G005100.t1"; gene_id "Ledus.S3G005100"
Ledus.S3	AUGUSTUS	stop_codon	268397	268399	.	+	0	transcript_id "Ledus.S3G005100.t1"; gene_id "Ledus.S3G005100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11837.t1 is derived from g5456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7202665	7204552	.	-	.	Ledus.S4G099300
Ledus.S4	AUGUSTUS	transcript	7202665	7204552	.	-	.	transcript_id "Ledus.S4G099300.t1"; gene_id "Ledus.S4G099300"
Ledus.S4	AUGUSTUS	stop_codon	7202662	7202664	.	-	0	transcript_id "Ledus.S4G099300.t1"; gene_id "Ledus.S4G099300"
Ledus.S4	AUGUSTUS	CDS	7202665	7203231	0.89	-	0	transcript_id "Ledus.S4G099300.t1"; gene_id "Ledus.S4G099300"
Ledus.S4	AUGUSTUS	exon	7202665	7203231	.	-	.	transcript_id "Ledus.S4G099300.t1"; gene_id "Ledus.S4G099300"
Ledus.S4	AUGUSTUS	intron	7203232	7203313	.	-	.	transcript_id "Ledus.S4G099300.t1"; gene_id "Ledus.S4G099300"
Ledus.S4	AUGUSTUS	CDS	7203314	7204552	0.67	-	0	transcript_id "Ledus.S4G099300.t1"; gene_id "Ledus.S4G099300"
Ledus.S4	AUGUSTUS	exon	7203314	7204552	.	-	.	transcript_id "Ledus.S4G099300.t1"; gene_id "Ledus.S4G099300"
Ledus.S4	AUGUSTUS	start_codon	7204550	7204552	.	-	0	transcript_id "Ledus.S4G099300.t1"; gene_id "Ledus.S4G099300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2259.t1 is derived from g9122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16652880	16653465	.	+	.	Ledus.S2G214100
Ledus.S2	AUGUSTUS	transcript	16652880	16653465	.	+	.	transcript_id "Ledus.S2G214100.t1"; gene_id "Ledus.S2G214100"
Ledus.S2	AUGUSTUS	start_codon	16652880	16652882	.	+	0	transcript_id "Ledus.S2G214100.t1"; gene_id "Ledus.S2G214100"
Ledus.S2	AUGUSTUS	CDS	16652880	16653120	0.83	+	0	transcript_id "Ledus.S2G214100.t1"; gene_id "Ledus.S2G214100"
Ledus.S2	AUGUSTUS	exon	16652880	16653120	.	+	.	transcript_id "Ledus.S2G214100.t1"; gene_id "Ledus.S2G214100"
Ledus.S2	AUGUSTUS	intron	16653121	16653244	.	+	.	transcript_id "Ledus.S2G214100.t1"; gene_id "Ledus.S2G214100"
Ledus.S2	AUGUSTUS	CDS	16653245	16653465	0.98	+	2	transcript_id "Ledus.S2G214100.t1"; gene_id "Ledus.S2G214100"
Ledus.S2	AUGUSTUS	exon	16653245	16653465	.	+	.	transcript_id "Ledus.S2G214100.t1"; gene_id "Ledus.S2G214100"
Ledus.S2	AUGUSTUS	stop_codon	16653466	16653468	.	+	0	transcript_id "Ledus.S2G214100.t1"; gene_id "Ledus.S2G214100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9552.t1 is derived from g10582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7755622	7757370	.	-	.	Ledus.S3G102900
Ledus.S3	AUGUSTUS	transcript	7755622	7757370	.	-	.	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	stop_codon	7755619	7755621	.	-	0	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	CDS	7755622	7756081	0.99	-	1	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	exon	7755622	7756081	.	-	.	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	intron	7756082	7756217	.	-	.	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	CDS	7756218	7756285	1	-	0	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	exon	7756218	7756285	.	-	.	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	intron	7756286	7756374	.	-	.	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	CDS	7756375	7756643	1	-	2	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	exon	7756375	7756643	.	-	.	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	intron	7756644	7756733	.	-	.	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	CDS	7756734	7756797	1	-	0	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	exon	7756734	7756797	.	-	.	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	intron	7756798	7756933	.	-	.	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	CDS	7756934	7757087	1	-	1	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	exon	7756934	7757087	.	-	.	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	intron	7757088	7757212	.	-	.	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	CDS	7757213	7757370	0.6	-	0	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	exon	7757213	7757370	.	-	.	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
Ledus.S3	AUGUSTUS	start_codon	7757368	7757370	.	-	0	transcript_id "Ledus.S3G102900.t1"; gene_id "Ledus.S3G102900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6914.t1 is derived from g4358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35188111	35188317	.	-	.	Ledus.S1G433500
Ledus.S1	AUGUSTUS	transcript	35188111	35188317	.	-	.	transcript_id "Ledus.S1G433500.t1"; gene_id "Ledus.S1G433500"
Ledus.S1	AUGUSTUS	stop_codon	35188108	35188110	.	-	0	transcript_id "Ledus.S1G433500.t1"; gene_id "Ledus.S1G433500"
Ledus.S1	AUGUSTUS	CDS	35188111	35188317	0.49	-	0	transcript_id "Ledus.S1G433500.t1"; gene_id "Ledus.S1G433500"
Ledus.S1	AUGUSTUS	exon	35188111	35188317	.	-	.	transcript_id "Ledus.S1G433500.t1"; gene_id "Ledus.S1G433500"
Ledus.S1	AUGUSTUS	start_codon	35188315	35188317	.	-	0	transcript_id "Ledus.S1G433500.t1"; gene_id "Ledus.S1G433500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2126.t1 is derived from g8989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14848551	14850130	.	+	.	Ledus.S2G200800
Ledus.S2	AUGUSTUS	transcript	14848551	14850130	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	start_codon	14848551	14848553	.	+	0	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	CDS	14848551	14848614	0.49	+	0	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	exon	14848551	14848614	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	intron	14848615	14848856	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	CDS	14848857	14848947	1	+	2	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	exon	14848857	14848947	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	intron	14848948	14849023	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	CDS	14849024	14849098	1	+	1	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	exon	14849024	14849098	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	intron	14849099	14849176	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	CDS	14849177	14849213	1	+	1	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	exon	14849177	14849213	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	intron	14849214	14849325	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	CDS	14849326	14849409	1	+	0	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	exon	14849326	14849409	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	intron	14849410	14849512	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	CDS	14849513	14849573	0.99	+	0	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	exon	14849513	14849573	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	intron	14849574	14849676	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	CDS	14849677	14849777	0.95	+	2	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	exon	14849677	14849777	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	intron	14849778	14849870	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	CDS	14849871	14849936	1	+	0	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	exon	14849871	14849936	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	intron	14849937	14850028	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	CDS	14850029	14850130	0.98	+	0	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	exon	14850029	14850130	.	+	.	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
Ledus.S2	AUGUSTUS	stop_codon	14850131	14850133	.	+	0	transcript_id "Ledus.S2G200800.t1"; gene_id "Ledus.S2G200800"
# This transcript jg5069.t2 is derived from g2508.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5070.t1 is derived from g2509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21450542	21451831	.	+	.	Ledus.S1G249100
Ledus.S1	AUGUSTUS	transcript	21450542	21451831	.	+	.	transcript_id "Ledus.S1G249100.t1"; gene_id "Ledus.S1G249100"
Ledus.S1	AUGUSTUS	start_codon	21450542	21450544	.	+	0	transcript_id "Ledus.S1G249100.t1"; gene_id "Ledus.S1G249100"
Ledus.S1	AUGUSTUS	CDS	21450542	21451831	0.64	+	0	transcript_id "Ledus.S1G249100.t1"; gene_id "Ledus.S1G249100"
Ledus.S1	AUGUSTUS	exon	21450542	21451831	.	+	.	transcript_id "Ledus.S1G249100.t1"; gene_id "Ledus.S1G249100"
Ledus.S1	AUGUSTUS	stop_codon	21451832	21451834	.	+	0	transcript_id "Ledus.S1G249100.t1"; gene_id "Ledus.S1G249100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg227.t1 is derived from g7088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1001079	1003408	.	+	.	Ledus.S2G010900
Ledus.S2	AUGUSTUS	transcript	1001079	1003408	.	+	.	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	start_codon	1001079	1001081	.	+	0	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	CDS	1001079	1002068	0.83	+	0	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	exon	1001079	1002068	.	+	.	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	intron	1002069	1002156	.	+	.	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	CDS	1002157	1002290	0.65	+	0	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	exon	1002157	1002290	.	+	.	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	intron	1002291	1002411	.	+	.	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	CDS	1002412	1002525	0.87	+	1	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	exon	1002412	1002525	.	+	.	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	intron	1002526	1002606	.	+	.	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	CDS	1002607	1002775	1	+	1	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	exon	1002607	1002775	.	+	.	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	intron	1002776	1002857	.	+	.	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	CDS	1002858	1002926	1	+	0	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	exon	1002858	1002926	.	+	.	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	intron	1002927	1003018	.	+	.	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	CDS	1003019	1003408	1	+	0	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	exon	1003019	1003408	.	+	.	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
Ledus.S2	AUGUSTUS	stop_codon	1003409	1003411	.	+	0	transcript_id "Ledus.S2G010900.t1"; gene_id "Ledus.S2G010900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg56.t1 is derived from g9469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	152710	154556	.	+	.	Ledus.C8G001600
Ledus.C8	AUGUSTUS	transcript	152710	154556	.	+	.	transcript_id "Ledus.C8G001600.t1"; gene_id "Ledus.C8G001600"
Ledus.C8	AUGUSTUS	start_codon	152710	152712	.	+	0	transcript_id "Ledus.C8G001600.t1"; gene_id "Ledus.C8G001600"
Ledus.C8	AUGUSTUS	CDS	152710	153018	0.93	+	0	transcript_id "Ledus.C8G001600.t1"; gene_id "Ledus.C8G001600"
Ledus.C8	AUGUSTUS	exon	152710	153018	.	+	.	transcript_id "Ledus.C8G001600.t1"; gene_id "Ledus.C8G001600"
Ledus.C8	AUGUSTUS	intron	153019	153117	.	+	.	transcript_id "Ledus.C8G001600.t1"; gene_id "Ledus.C8G001600"
Ledus.C8	AUGUSTUS	CDS	153118	153429	1	+	0	transcript_id "Ledus.C8G001600.t1"; gene_id "Ledus.C8G001600"
Ledus.C8	AUGUSTUS	exon	153118	153429	.	+	.	transcript_id "Ledus.C8G001600.t1"; gene_id "Ledus.C8G001600"
Ledus.C8	AUGUSTUS	intron	153430	153806	.	+	.	transcript_id "Ledus.C8G001600.t1"; gene_id "Ledus.C8G001600"
Ledus.C8	AUGUSTUS	CDS	153807	154556	1	+	0	transcript_id "Ledus.C8G001600.t1"; gene_id "Ledus.C8G001600"
Ledus.C8	AUGUSTUS	exon	153807	154556	.	+	.	transcript_id "Ledus.C8G001600.t1"; gene_id "Ledus.C8G001600"
Ledus.C8	AUGUSTUS	stop_codon	154557	154559	.	+	0	transcript_id "Ledus.C8G001600.t1"; gene_id "Ledus.C8G001600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1559.t1 is derived from g8420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10931398	10932782	.	+	.	Ledus.S2G144100
Ledus.S2	AUGUSTUS	transcript	10931398	10932782	.	+	.	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	start_codon	10931398	10931400	.	+	0	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	CDS	10931398	10931508	0.97	+	0	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	exon	10931398	10931508	.	+	.	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	intron	10931509	10931602	.	+	.	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	CDS	10931603	10931665	1	+	0	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	exon	10931603	10931665	.	+	.	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	intron	10931666	10931753	.	+	.	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	CDS	10931754	10931993	1	+	0	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	exon	10931754	10931993	.	+	.	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	intron	10931994	10932113	.	+	.	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	CDS	10932114	10932782	1	+	0	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	exon	10932114	10932782	.	+	.	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
Ledus.S2	AUGUSTUS	stop_codon	10932783	10932785	.	+	0	transcript_id "Ledus.S2G144100.t1"; gene_id "Ledus.S2G144100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7688.t1 is derived from g12359.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5189010	5189363	.	-	.	Ledus.S5G046600
Ledus.S5	AUGUSTUS	transcript	5189010	5189363	.	-	.	transcript_id "Ledus.S5G046600.t1"; gene_id "Ledus.S5G046600"
Ledus.S5	AUGUSTUS	stop_codon	5189007	5189009	.	-	0	transcript_id "Ledus.S5G046600.t1"; gene_id "Ledus.S5G046600"
Ledus.S5	AUGUSTUS	CDS	5189010	5189363	0.38	-	0	transcript_id "Ledus.S5G046600.t1"; gene_id "Ledus.S5G046600"
Ledus.S5	AUGUSTUS	exon	5189010	5189363	.	-	.	transcript_id "Ledus.S5G046600.t1"; gene_id "Ledus.S5G046600"
Ledus.S5	AUGUSTUS	start_codon	5189361	5189363	.	-	0	transcript_id "Ledus.S5G046600.t1"; gene_id "Ledus.S5G046600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8554.t1 is derived from g9584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	152172	153074	.	+	.	Ledus.S3G003100
Ledus.S3	AUGUSTUS	transcript	152172	153074	.	+	.	transcript_id "Ledus.S3G003100.t1"; gene_id "Ledus.S3G003100"
Ledus.S3	AUGUSTUS	start_codon	152172	152174	.	+	0	transcript_id "Ledus.S3G003100.t1"; gene_id "Ledus.S3G003100"
Ledus.S3	AUGUSTUS	CDS	152172	153074	0.6	+	0	transcript_id "Ledus.S3G003100.t1"; gene_id "Ledus.S3G003100"
Ledus.S3	AUGUSTUS	exon	152172	153074	.	+	.	transcript_id "Ledus.S3G003100.t1"; gene_id "Ledus.S3G003100"
Ledus.S3	AUGUSTUS	stop_codon	153075	153077	.	+	0	transcript_id "Ledus.S3G003100.t1"; gene_id "Ledus.S3G003100"
# This transcript jg5382.t2 is derived from g2821.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5383.t1 is derived from g2822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23950499	23951215	.	-	.	Ledus.S1G280400
Ledus.S1	AUGUSTUS	transcript	23950499	23951215	.	-	.	transcript_id "Ledus.S1G280400.t1"; gene_id "Ledus.S1G280400"
Ledus.S1	AUGUSTUS	stop_codon	23950496	23950498	.	-	0	transcript_id "Ledus.S1G280400.t1"; gene_id "Ledus.S1G280400"
Ledus.S1	AUGUSTUS	CDS	23950499	23951215	0.35	-	0	transcript_id "Ledus.S1G280400.t1"; gene_id "Ledus.S1G280400"
Ledus.S1	AUGUSTUS	exon	23950499	23951215	.	-	.	transcript_id "Ledus.S1G280400.t1"; gene_id "Ledus.S1G280400"
Ledus.S1	AUGUSTUS	start_codon	23951213	23951215	.	-	0	transcript_id "Ledus.S1G280400.t1"; gene_id "Ledus.S1G280400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1393.t1 is derived from g8254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9745297	9745862	.	-	.	Ledus.S2G127500
Ledus.S2	AUGUSTUS	transcript	9745297	9745862	.	-	.	transcript_id "Ledus.S2G127500.t1"; gene_id "Ledus.S2G127500"
Ledus.S2	AUGUSTUS	stop_codon	9745294	9745296	.	-	0	transcript_id "Ledus.S2G127500.t1"; gene_id "Ledus.S2G127500"
Ledus.S2	AUGUSTUS	CDS	9745297	9745342	0.86	-	1	transcript_id "Ledus.S2G127500.t1"; gene_id "Ledus.S2G127500"
Ledus.S2	AUGUSTUS	exon	9745297	9745342	.	-	.	transcript_id "Ledus.S2G127500.t1"; gene_id "Ledus.S2G127500"
Ledus.S2	AUGUSTUS	intron	9745343	9745431	.	-	.	transcript_id "Ledus.S2G127500.t1"; gene_id "Ledus.S2G127500"
Ledus.S2	AUGUSTUS	CDS	9745432	9745495	1	-	2	transcript_id "Ledus.S2G127500.t1"; gene_id "Ledus.S2G127500"
Ledus.S2	AUGUSTUS	exon	9745432	9745495	.	-	.	transcript_id "Ledus.S2G127500.t1"; gene_id "Ledus.S2G127500"
Ledus.S2	AUGUSTUS	intron	9745496	9745747	.	-	.	transcript_id "Ledus.S2G127500.t1"; gene_id "Ledus.S2G127500"
Ledus.S2	AUGUSTUS	CDS	9745748	9745862	0.65	-	0	transcript_id "Ledus.S2G127500.t1"; gene_id "Ledus.S2G127500"
Ledus.S2	AUGUSTUS	exon	9745748	9745862	.	-	.	transcript_id "Ledus.S2G127500.t1"; gene_id "Ledus.S2G127500"
Ledus.S2	AUGUSTUS	start_codon	9745860	9745862	.	-	0	transcript_id "Ledus.S2G127500.t1"; gene_id "Ledus.S2G127500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg972.t1 is derived from g7833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6390293	6391141	.	-	.	Ledus.S2G085400
Ledus.S2	AUGUSTUS	transcript	6390293	6391141	.	-	.	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	stop_codon	6390290	6390292	.	-	0	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	CDS	6390293	6390376	1	-	0	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	exon	6390293	6390376	.	-	.	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	intron	6390377	6390461	.	-	.	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	CDS	6390462	6390548	1	-	0	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	exon	6390462	6390548	.	-	.	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	intron	6390549	6390649	.	-	.	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	CDS	6390650	6390733	1	-	0	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	exon	6390650	6390733	.	-	.	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	intron	6390734	6390818	.	-	.	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	CDS	6390819	6390941	1	-	0	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	exon	6390819	6390941	.	-	.	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	intron	6390942	6391036	.	-	.	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	CDS	6391037	6391141	0.57	-	0	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	exon	6391037	6391141	.	-	.	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
Ledus.S2	AUGUSTUS	start_codon	6391139	6391141	.	-	0	transcript_id "Ledus.S2G085400.t1"; gene_id "Ledus.S2G085400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8480.t1 is derived from g13152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12125145	12126001	.	-	.	Ledus.S5G125800
Ledus.S5	AUGUSTUS	transcript	12125145	12126001	.	-	.	transcript_id "Ledus.S5G125800.t1"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	stop_codon	12125142	12125144	.	-	0	transcript_id "Ledus.S5G125800.t1"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	CDS	12125145	12125326	0.89	-	2	transcript_id "Ledus.S5G125800.t1"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	exon	12125145	12125326	.	-	.	transcript_id "Ledus.S5G125800.t1"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	intron	12125327	12125421	.	-	.	transcript_id "Ledus.S5G125800.t1"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	CDS	12125422	12125700	1	-	2	transcript_id "Ledus.S5G125800.t1"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	exon	12125422	12125700	.	-	.	transcript_id "Ledus.S5G125800.t1"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	intron	12125701	12125964	.	-	.	transcript_id "Ledus.S5G125800.t1"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	CDS	12125965	12126001	0.43	-	0	transcript_id "Ledus.S5G125800.t1"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	exon	12125965	12126001	.	-	.	transcript_id "Ledus.S5G125800.t1"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	start_codon	12125999	12126001	.	-	0	transcript_id "Ledus.S5G125800.t1"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	transcript	12125145	12126001	.	-	.	transcript_id "Ledus.S5G125800.t2"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	stop_codon	12125142	12125144	.	-	0	transcript_id "Ledus.S5G125800.t2"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	CDS	12125145	12125323	0.9	-	2	transcript_id "Ledus.S5G125800.t2"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	exon	12125145	12125323	.	-	.	transcript_id "Ledus.S5G125800.t2"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	intron	12125324	12125421	.	-	.	transcript_id "Ledus.S5G125800.t2"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	CDS	12125422	12125700	1	-	2	transcript_id "Ledus.S5G125800.t2"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	exon	12125422	12125700	.	-	.	transcript_id "Ledus.S5G125800.t2"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	intron	12125701	12125964	.	-	.	transcript_id "Ledus.S5G125800.t2"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	CDS	12125965	12126001	0.3	-	0	transcript_id "Ledus.S5G125800.t2"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	exon	12125965	12126001	.	-	.	transcript_id "Ledus.S5G125800.t2"; gene_id "Ledus.S5G125800"
Ledus.S5	AUGUSTUS	start_codon	12125999	12126001	.	-	0	transcript_id "Ledus.S5G125800.t2"; gene_id "Ledus.S5G125800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5992.t1 is derived from g3435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28185759	28186893	.	+	.	Ledus.S1G341300
Ledus.S1	AUGUSTUS	transcript	28185759	28186893	.	+	.	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	start_codon	28185759	28185761	.	+	0	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	CDS	28185759	28186010	0.97	+	0	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	exon	28185759	28186010	.	+	.	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	intron	28186011	28186138	.	+	.	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	CDS	28186139	28186291	1	+	0	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	exon	28186139	28186291	.	+	.	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	intron	28186292	28186386	.	+	.	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	CDS	28186387	28186446	1	+	0	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	exon	28186387	28186446	.	+	.	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	intron	28186447	28186582	.	+	.	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	CDS	28186583	28186752	0.96	+	0	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	exon	28186583	28186752	.	+	.	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	intron	28186753	28186865	.	+	.	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	CDS	28186866	28186893	0.95	+	1	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	exon	28186866	28186893	.	+	.	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
Ledus.S1	AUGUSTUS	stop_codon	28186894	28186896	.	+	0	transcript_id "Ledus.S1G341300.t1"; gene_id "Ledus.S1G341300"
# This transcript jg9978.t2 is derived from g11008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9978.t3 is derived from g11008.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9979.t1 is derived from g11009.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11721172	11723924	.	-	.	Ledus.S3G145600
Ledus.S3	AUGUSTUS	transcript	11721172	11723924	.	-	.	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	stop_codon	11721169	11721171	.	-	0	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	CDS	11721172	11722988	1	-	2	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	exon	11721172	11722988	.	-	.	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	intron	11722989	11723085	.	-	.	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	CDS	11723086	11723320	1	-	0	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	exon	11723086	11723320	.	-	.	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	intron	11723321	11723423	.	-	.	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	CDS	11723424	11723659	1	-	2	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	exon	11723424	11723659	.	-	.	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	intron	11723660	11723890	.	-	.	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	CDS	11723891	11723924	0.89	-	0	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	exon	11723891	11723924	.	-	.	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	start_codon	11723922	11723924	.	-	0	transcript_id "Ledus.S3G145600.t1"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	transcript	11721172	11723904	.	-	.	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	stop_codon	11721169	11721171	.	-	0	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	CDS	11721172	11722988	0.99	-	2	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	exon	11721172	11722988	.	-	.	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	intron	11722989	11723085	.	-	.	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	CDS	11723086	11723320	1	-	0	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	exon	11723086	11723320	.	-	.	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	intron	11723321	11723423	.	-	.	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	CDS	11723424	11723655	0.86	-	1	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	exon	11723424	11723655	.	-	.	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	intron	11723656	11723890	.	-	.	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	CDS	11723891	11723904	0.86	-	0	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	exon	11723891	11723904	.	-	.	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
Ledus.S3	AUGUSTUS	start_codon	11723902	11723904	.	-	0	transcript_id "Ledus.S3G145600.t2"; gene_id "Ledus.S3G145600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6305.t1 is derived from g3748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30413928	30415362	.	+	.	Ledus.S1G372600
Ledus.S1	AUGUSTUS	transcript	30413928	30415362	.	+	.	transcript_id "Ledus.S1G372600.t1"; gene_id "Ledus.S1G372600"
Ledus.S1	AUGUSTUS	start_codon	30413928	30413930	.	+	0	transcript_id "Ledus.S1G372600.t1"; gene_id "Ledus.S1G372600"
Ledus.S1	AUGUSTUS	CDS	30413928	30414385	0.73	+	0	transcript_id "Ledus.S1G372600.t1"; gene_id "Ledus.S1G372600"
Ledus.S1	AUGUSTUS	exon	30413928	30414385	.	+	.	transcript_id "Ledus.S1G372600.t1"; gene_id "Ledus.S1G372600"
Ledus.S1	AUGUSTUS	intron	30414386	30414467	.	+	.	transcript_id "Ledus.S1G372600.t1"; gene_id "Ledus.S1G372600"
Ledus.S1	AUGUSTUS	CDS	30414468	30415362	0.64	+	1	transcript_id "Ledus.S1G372600.t1"; gene_id "Ledus.S1G372600"
Ledus.S1	AUGUSTUS	exon	30414468	30415362	.	+	.	transcript_id "Ledus.S1G372600.t1"; gene_id "Ledus.S1G372600"
Ledus.S1	AUGUSTUS	stop_codon	30415363	30415365	.	+	0	transcript_id "Ledus.S1G372600.t1"; gene_id "Ledus.S1G372600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7897.t1 is derived from g12568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7720119	7724451	.	-	.	Ledus.S5G067500
Ledus.S5	AUGUSTUS	transcript	7720119	7724451	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	stop_codon	7720116	7720118	.	-	0	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7720119	7720313	0.95	-	0	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7720119	7720313	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7720314	7720384	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7720385	7720466	1	-	1	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7720385	7720466	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7720467	7720546	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7720547	7720855	0.65	-	1	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7720547	7720855	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7720856	7720959	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7720960	7721125	0.62	-	2	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7720960	7721125	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7721126	7721552	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7721553	7721802	0.63	-	0	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7721553	7721802	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7721803	7721885	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7721886	7722070	0.99	-	2	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7721886	7722070	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7722071	7722172	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7722173	7722311	0.97	-	0	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7722173	7722311	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7722312	7722449	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7722450	7722504	0.96	-	1	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7722450	7722504	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7722505	7722624	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7722625	7722692	1	-	0	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7722625	7722692	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7722693	7722858	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7722859	7723155	1	-	0	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7722859	7723155	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7723156	7723257	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7723258	7723332	1	-	0	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7723258	7723332	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7723333	7723407	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7723408	7723501	1	-	1	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7723408	7723501	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7723502	7723645	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7723646	7723723	1	-	1	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7723646	7723723	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7723724	7723838	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7723839	7723987	1	-	0	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7723839	7723987	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7723988	7724070	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7724071	7724223	1	-	0	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7724071	7724223	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7724224	7724328	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7724329	7724451	0.7	-	0	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7724329	7724451	.	-	.	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	start_codon	7724449	7724451	.	-	0	transcript_id "Ledus.S5G067500.t1"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	transcript	7720119	7724451	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	stop_codon	7720116	7720118	.	-	0	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7720119	7720313	0.93	-	0	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7720119	7720313	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7720314	7720384	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7720385	7720466	1	-	1	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7720385	7720466	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7720467	7720546	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7720547	7720855	0.6	-	1	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7720547	7720855	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7720856	7720959	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7720960	7721125	0.54	-	2	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7720960	7721125	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7721126	7721552	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7721553	7721802	0.61	-	0	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7721553	7721802	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7721803	7721885	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7721886	7722070	1	-	2	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7721886	7722070	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7722071	7722172	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7722173	7722311	0.96	-	0	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7722173	7722311	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7722312	7722449	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7722450	7722504	0.97	-	1	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7722450	7722504	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7722505	7722673	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7722674	7722717	0.52	-	0	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7722674	7722717	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7722718	7722858	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7722859	7723155	0.53	-	0	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7722859	7723155	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7723156	7723257	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7723258	7723332	1	-	0	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7723258	7723332	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7723333	7723407	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7723408	7723501	1	-	1	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7723408	7723501	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7723502	7723645	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7723646	7723723	1	-	1	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7723646	7723723	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7723724	7723838	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7723839	7723987	1	-	0	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7723839	7723987	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7723988	7724070	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7724071	7724223	1	-	0	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7724071	7724223	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	intron	7724224	7724328	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	CDS	7724329	7724451	0.65	-	0	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	exon	7724329	7724451	.	-	.	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
Ledus.S5	AUGUSTUS	start_codon	7724449	7724451	.	-	0	transcript_id "Ledus.S5G067500.t2"; gene_id "Ledus.S5G067500"
# This transcript jg9592.t2 is derived from g10622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9593.t1 is derived from g10623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8163210	8165634	.	-	.	Ledus.S3G107000
Ledus.S3	AUGUSTUS	transcript	8163210	8165634	.	-	.	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	stop_codon	8163207	8163209	.	-	0	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	CDS	8163210	8163654	0.88	-	1	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	exon	8163210	8163654	.	-	.	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	intron	8163655	8163744	.	-	.	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	CDS	8163745	8163929	1	-	0	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	exon	8163745	8163929	.	-	.	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	intron	8163930	8164034	.	-	.	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	CDS	8164035	8164759	1	-	2	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	exon	8164035	8164759	.	-	.	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	intron	8164760	8164866	.	-	.	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	CDS	8164867	8165433	0.98	-	2	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	exon	8164867	8165433	.	-	.	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	intron	8165434	8165549	.	-	.	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	CDS	8165550	8165634	0.95	-	0	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	exon	8165550	8165634	.	-	.	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	start_codon	8165632	8165634	.	-	0	transcript_id "Ledus.S3G107000.t1"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	transcript	8163210	8165425	.	-	.	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	stop_codon	8163207	8163209	.	-	0	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	CDS	8163210	8163654	0.9	-	1	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	exon	8163210	8163654	.	-	.	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	intron	8163655	8163744	.	-	.	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	CDS	8163745	8163929	1	-	0	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	exon	8163745	8163929	.	-	.	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	intron	8163930	8164034	.	-	.	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	CDS	8164035	8164759	0.99	-	2	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	exon	8164035	8164759	.	-	.	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	intron	8164760	8164866	.	-	.	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	CDS	8164867	8165425	0.85	-	0	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	exon	8164867	8165425	.	-	.	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
Ledus.S3	AUGUSTUS	start_codon	8165423	8165425	.	-	0	transcript_id "Ledus.S3G107000.t2"; gene_id "Ledus.S3G107000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1458.t1 is derived from g8319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10301250	10302810	.	+	.	Ledus.S2G134000
Ledus.S2	AUGUSTUS	transcript	10301250	10302810	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	start_codon	10301250	10301252	.	+	0	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	CDS	10301250	10301325	0.94	+	0	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	exon	10301250	10301325	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	intron	10301326	10301714	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	CDS	10301715	10301730	1	+	2	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	exon	10301715	10301730	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	intron	10301731	10301875	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	CDS	10301876	10302006	1	+	1	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	exon	10301876	10302006	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	intron	10302007	10302141	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	CDS	10302142	10302262	1	+	2	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	exon	10302142	10302262	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	intron	10302263	10302356	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	CDS	10302357	10302460	1	+	1	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	exon	10302357	10302460	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	intron	10302461	10302561	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	CDS	10302562	10302683	1	+	2	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	exon	10302562	10302683	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	intron	10302684	10302762	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	CDS	10302763	10302810	1	+	0	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	exon	10302763	10302810	.	+	.	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
Ledus.S2	AUGUSTUS	stop_codon	10302811	10302813	.	+	0	transcript_id "Ledus.S2G134000.t1"; gene_id "Ledus.S2G134000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6333.t1 is derived from g3776.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30563295	30564400	.	+	.	Ledus.S1G375400
Ledus.S1	AUGUSTUS	transcript	30563295	30564400	.	+	.	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	start_codon	30563295	30563297	.	+	0	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	CDS	30563295	30563390	1	+	0	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	exon	30563295	30563390	.	+	.	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	intron	30563391	30563466	.	+	.	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	CDS	30563467	30563691	1	+	0	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	exon	30563467	30563691	.	+	.	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	intron	30563692	30563777	.	+	.	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	CDS	30563778	30563972	1	+	0	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	exon	30563778	30563972	.	+	.	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	intron	30563973	30564055	.	+	.	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	CDS	30564056	30564117	1	+	0	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	exon	30564056	30564117	.	+	.	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	intron	30564118	30564204	.	+	.	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	CDS	30564205	30564400	1	+	1	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	exon	30564205	30564400	.	+	.	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
Ledus.S1	AUGUSTUS	stop_codon	30564401	30564403	.	+	0	transcript_id "Ledus.S1G375400.t1"; gene_id "Ledus.S1G375400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9728.t1 is derived from g10758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9462205	9465941	.	-	.	Ledus.S3G120500
Ledus.S3	AUGUSTUS	transcript	9462205	9465941	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	stop_codon	9462202	9462204	.	-	0	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	CDS	9462205	9462488	0.32	-	2	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	exon	9462205	9462488	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	intron	9462489	9462597	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	CDS	9462598	9462778	0.97	-	0	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	exon	9462598	9462778	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	intron	9462779	9462894	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	CDS	9462895	9462960	0.97	-	0	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	exon	9462895	9462960	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	intron	9462961	9463331	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	CDS	9463332	9463477	0.99	-	2	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	exon	9463332	9463477	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	intron	9463478	9463585	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	CDS	9463586	9463664	0.98	-	0	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	exon	9463586	9463664	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	intron	9463665	9463771	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	CDS	9463772	9463849	1	-	0	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	exon	9463772	9463849	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	intron	9463850	9464438	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	CDS	9464439	9464603	1	-	0	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	exon	9464439	9464603	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	intron	9464604	9464783	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	CDS	9464784	9465941	0.23	-	0	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	exon	9464784	9465941	.	-	.	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
Ledus.S3	AUGUSTUS	start_codon	9465939	9465941	.	-	0	transcript_id "Ledus.S3G120500.t1"; gene_id "Ledus.S3G120500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2364.t1 is derived from g9227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17590311	17592876	.	-	.	Ledus.S2G224600
Ledus.S2	AUGUSTUS	transcript	17590311	17592876	.	-	.	transcript_id "Ledus.S2G224600.t1"; gene_id "Ledus.S2G224600"
Ledus.S2	AUGUSTUS	stop_codon	17590308	17590310	.	-	0	transcript_id "Ledus.S2G224600.t1"; gene_id "Ledus.S2G224600"
Ledus.S2	AUGUSTUS	CDS	17590311	17590386	0.01	-	1	transcript_id "Ledus.S2G224600.t1"; gene_id "Ledus.S2G224600"
Ledus.S2	AUGUSTUS	exon	17590311	17590386	.	-	.	transcript_id "Ledus.S2G224600.t1"; gene_id "Ledus.S2G224600"
Ledus.S2	AUGUSTUS	intron	17590387	17591437	.	-	.	transcript_id "Ledus.S2G224600.t1"; gene_id "Ledus.S2G224600"
Ledus.S2	AUGUSTUS	CDS	17591438	17592876	0.73	-	0	transcript_id "Ledus.S2G224600.t1"; gene_id "Ledus.S2G224600"
Ledus.S2	AUGUSTUS	exon	17591438	17592876	.	-	.	transcript_id "Ledus.S2G224600.t1"; gene_id "Ledus.S2G224600"
Ledus.S2	AUGUSTUS	start_codon	17592874	17592876	.	-	0	transcript_id "Ledus.S2G224600.t1"; gene_id "Ledus.S2G224600"
# This transcript jg1771.t2 is derived from g8635.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1772.t1 is derived from g8634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12428999	12429400	.	-	.	Ledus.S2G165300
Ledus.S2	AUGUSTUS	transcript	12428999	12429400	.	-	.	transcript_id "Ledus.S2G165300.t1"; gene_id "Ledus.S2G165300"
Ledus.S2	AUGUSTUS	stop_codon	12428996	12428998	.	-	0	transcript_id "Ledus.S2G165300.t1"; gene_id "Ledus.S2G165300"
Ledus.S2	AUGUSTUS	CDS	12428999	12429400	0.53	-	0	transcript_id "Ledus.S2G165300.t1"; gene_id "Ledus.S2G165300"
Ledus.S2	AUGUSTUS	exon	12428999	12429400	.	-	.	transcript_id "Ledus.S2G165300.t1"; gene_id "Ledus.S2G165300"
Ledus.S2	AUGUSTUS	start_codon	12429398	12429400	.	-	0	transcript_id "Ledus.S2G165300.t1"; gene_id "Ledus.S2G165300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7434.t1 is derived from g12105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2614193	2614525	.	+	.	Ledus.S5G021200
Ledus.S5	AUGUSTUS	transcript	2614193	2614525	.	+	.	transcript_id "Ledus.S5G021200.t1"; gene_id "Ledus.S5G021200"
Ledus.S5	AUGUSTUS	start_codon	2614193	2614195	.	+	0	transcript_id "Ledus.S5G021200.t1"; gene_id "Ledus.S5G021200"
Ledus.S5	AUGUSTUS	CDS	2614193	2614525	1	+	0	transcript_id "Ledus.S5G021200.t1"; gene_id "Ledus.S5G021200"
Ledus.S5	AUGUSTUS	exon	2614193	2614525	.	+	.	transcript_id "Ledus.S5G021200.t1"; gene_id "Ledus.S5G021200"
Ledus.S5	AUGUSTUS	stop_codon	2614526	2614528	.	+	0	transcript_id "Ledus.S5G021200.t1"; gene_id "Ledus.S5G021200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6034.t1 is derived from g3477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28606505	28609805	.	-	.	Ledus.S1G345500
Ledus.S1	AUGUSTUS	transcript	28606505	28609805	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	stop_codon	28606502	28606504	.	-	0	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28606505	28606738	0.98	-	0	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28606505	28606738	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28606739	28606827	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28606828	28607277	0.98	-	0	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28606828	28607277	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28607278	28607371	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28607372	28607461	1	-	0	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28607372	28607461	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28607462	28607608	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28607609	28607681	1	-	1	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28607609	28607681	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28607682	28607864	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28607865	28607921	1	-	1	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28607865	28607921	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28607922	28608101	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28608102	28608166	1	-	0	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28608102	28608166	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28608167	28608320	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28608321	28608372	1	-	1	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28608321	28608372	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28608373	28608494	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28608495	28608548	1	-	1	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28608495	28608548	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28608549	28608734	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28608735	28608817	1	-	0	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28608735	28608817	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28608818	28608922	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28608923	28608958	1	-	0	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28608923	28608958	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28608959	28609231	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28609232	28609337	1	-	1	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28609232	28609337	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28609338	28609482	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28609483	28609569	0.99	-	1	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28609483	28609569	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28609570	28609680	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28609681	28609805	0.71	-	0	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28609681	28609805	.	-	.	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	start_codon	28609803	28609805	.	-	0	transcript_id "Ledus.S1G345500.t1"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	transcript	28606505	28609805	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	stop_codon	28606502	28606504	.	-	0	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28606505	28606738	0.97	-	0	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28606505	28606738	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28606739	28606827	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28606828	28607277	0.96	-	0	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28606828	28607277	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28607278	28607371	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28607372	28607461	1	-	0	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28607372	28607461	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28607462	28607608	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28607609	28607681	1	-	1	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28607609	28607681	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28607682	28607864	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28607865	28607921	1	-	1	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28607865	28607921	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28607922	28608101	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28608102	28608166	1	-	0	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28608102	28608166	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28608167	28608320	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28608321	28608372	1	-	1	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28608321	28608372	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28608373	28608494	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28608495	28608576	0.99	-	2	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28608495	28608576	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28608577	28608734	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28608735	28608753	0.99	-	0	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28608735	28608753	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28608754	28608922	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28608923	28608958	1	-	0	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28608923	28608958	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28608959	28609231	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28609232	28609337	1	-	1	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28609232	28609337	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28609338	28609482	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28609483	28609569	1	-	1	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28609483	28609569	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	intron	28609570	28609680	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	CDS	28609681	28609805	0.73	-	0	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	exon	28609681	28609805	.	-	.	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
Ledus.S1	AUGUSTUS	start_codon	28609803	28609805	.	-	0	transcript_id "Ledus.S1G345500.t2"; gene_id "Ledus.S1G345500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg987.t1 is derived from g7848.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6515934	6519465	.	+	.	Ledus.S2G086900
Ledus.S2	AUGUSTUS	transcript	6515934	6519465	.	+	.	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	start_codon	6515934	6515936	.	+	0	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	CDS	6515934	6516080	0.89	+	0	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	exon	6515934	6516080	.	+	.	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	intron	6516081	6516226	.	+	.	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	CDS	6516227	6516555	0.96	+	0	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	exon	6516227	6516555	.	+	.	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	intron	6516556	6516648	.	+	.	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	CDS	6516649	6517930	1	+	1	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	exon	6516649	6517930	.	+	.	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	intron	6517931	6518110	.	+	.	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	CDS	6518111	6518380	0.99	+	0	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	exon	6518111	6518380	.	+	.	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	intron	6518381	6518487	.	+	.	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	CDS	6518488	6519465	0.97	+	0	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	exon	6518488	6519465	.	+	.	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
Ledus.S2	AUGUSTUS	stop_codon	6519466	6519468	.	+	0	transcript_id "Ledus.S2G086900.t1"; gene_id "Ledus.S2G086900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1259.t1 is derived from g8120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8938892	8939725	.	-	.	Ledus.S2G114100
Ledus.S2	AUGUSTUS	transcript	8938892	8939725	.	-	.	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	stop_codon	8938889	8938891	.	-	0	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	CDS	8938892	8938963	0.54	-	0	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	exon	8938892	8938963	.	-	.	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	intron	8938964	8939147	.	-	.	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	CDS	8939148	8939171	0.53	-	0	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	exon	8939148	8939171	.	-	.	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	intron	8939172	8939391	.	-	.	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	CDS	8939392	8939484	0.4	-	0	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	exon	8939392	8939484	.	-	.	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	intron	8939485	8939701	.	-	.	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	CDS	8939702	8939725	0.79	-	0	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	exon	8939702	8939725	.	-	.	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
Ledus.S2	AUGUSTUS	start_codon	8939723	8939725	.	-	0	transcript_id "Ledus.S2G114100.t1"; gene_id "Ledus.S2G114100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11001.t1 is derived from g4619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1064597	1065141	.	-	.	Ledus.S4G015700
Ledus.S4	AUGUSTUS	transcript	1064597	1065141	.	-	.	transcript_id "Ledus.S4G015700.t1"; gene_id "Ledus.S4G015700"
Ledus.S4	AUGUSTUS	stop_codon	1064594	1064596	.	-	0	transcript_id "Ledus.S4G015700.t1"; gene_id "Ledus.S4G015700"
Ledus.S4	AUGUSTUS	CDS	1064597	1064934	0.84	-	2	transcript_id "Ledus.S4G015700.t1"; gene_id "Ledus.S4G015700"
Ledus.S4	AUGUSTUS	exon	1064597	1064934	.	-	.	transcript_id "Ledus.S4G015700.t1"; gene_id "Ledus.S4G015700"
Ledus.S4	AUGUSTUS	intron	1064935	1065026	.	-	.	transcript_id "Ledus.S4G015700.t1"; gene_id "Ledus.S4G015700"
Ledus.S4	AUGUSTUS	CDS	1065027	1065141	0.59	-	0	transcript_id "Ledus.S4G015700.t1"; gene_id "Ledus.S4G015700"
Ledus.S4	AUGUSTUS	exon	1065027	1065141	.	-	.	transcript_id "Ledus.S4G015700.t1"; gene_id "Ledus.S4G015700"
Ledus.S4	AUGUSTUS	start_codon	1065139	1065141	.	-	0	transcript_id "Ledus.S4G015700.t1"; gene_id "Ledus.S4G015700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13035.t1 is derived from g6845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3706273	3706509	.	-	.	Ledus.S6G009700
Ledus.S6	AUGUSTUS	transcript	3706273	3706509	.	-	.	transcript_id "Ledus.S6G009700.t1"; gene_id "Ledus.S6G009700"
Ledus.S6	AUGUSTUS	stop_codon	3706270	3706272	.	-	0	transcript_id "Ledus.S6G009700.t1"; gene_id "Ledus.S6G009700"
Ledus.S6	AUGUSTUS	CDS	3706273	3706509	0.67	-	0	transcript_id "Ledus.S6G009700.t1"; gene_id "Ledus.S6G009700"
Ledus.S6	AUGUSTUS	exon	3706273	3706509	.	-	.	transcript_id "Ledus.S6G009700.t1"; gene_id "Ledus.S6G009700"
Ledus.S6	AUGUSTUS	start_codon	3706507	3706509	.	-	0	transcript_id "Ledus.S6G009700.t1"; gene_id "Ledus.S6G009700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7128.t1 is derived from g6659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1698569	1698997	.	-	.	Ledus.C7G018900
Ledus.C7	AUGUSTUS	transcript	1698569	1698997	.	-	.	transcript_id "Ledus.C7G018900.t1"; gene_id "Ledus.C7G018900"
Ledus.C7	AUGUSTUS	stop_codon	1698566	1698568	.	-	0	transcript_id "Ledus.C7G018900.t1"; gene_id "Ledus.C7G018900"
Ledus.C7	AUGUSTUS	CDS	1698569	1698997	0.4	-	0	transcript_id "Ledus.C7G018900.t1"; gene_id "Ledus.C7G018900"
Ledus.C7	AUGUSTUS	exon	1698569	1698997	.	-	.	transcript_id "Ledus.C7G018900.t1"; gene_id "Ledus.C7G018900"
Ledus.C7	AUGUSTUS	start_codon	1698995	1698997	.	-	0	transcript_id "Ledus.C7G018900.t1"; gene_id "Ledus.C7G018900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4961.t1 is derived from g2399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20891934	20894258	.	-	.	Ledus.S1G238200
Ledus.S1	AUGUSTUS	transcript	20891934	20894258	.	-	.	transcript_id "Ledus.S1G238200.t1"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	stop_codon	20891931	20891933	.	-	0	transcript_id "Ledus.S1G238200.t1"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	CDS	20891934	20894258	0.86	-	0	transcript_id "Ledus.S1G238200.t1"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	exon	20891934	20894258	.	-	.	transcript_id "Ledus.S1G238200.t1"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	start_codon	20894256	20894258	.	-	0	transcript_id "Ledus.S1G238200.t1"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	transcript	20892403	20894258	.	-	.	transcript_id "Ledus.S1G238200.t2"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	stop_codon	20892400	20892402	.	-	0	transcript_id "Ledus.S1G238200.t2"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	CDS	20892403	20892427	0.66	-	1	transcript_id "Ledus.S1G238200.t2"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	exon	20892403	20892427	.	-	.	transcript_id "Ledus.S1G238200.t2"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	intron	20892428	20892606	.	-	.	transcript_id "Ledus.S1G238200.t2"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	CDS	20892607	20894258	0.15	-	0	transcript_id "Ledus.S1G238200.t2"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	exon	20892607	20894258	.	-	.	transcript_id "Ledus.S1G238200.t2"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	start_codon	20894256	20894258	.	-	0	transcript_id "Ledus.S1G238200.t2"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	transcript	20891934	20893151	.	-	.	transcript_id "Ledus.S1G238200.t3"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	stop_codon	20891931	20891933	.	-	0	transcript_id "Ledus.S1G238200.t3"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	CDS	20891934	20893151	0.44	-	0	transcript_id "Ledus.S1G238200.t3"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	exon	20891934	20893151	.	-	.	transcript_id "Ledus.S1G238200.t3"; gene_id "Ledus.S1G238200"
Ledus.S1	AUGUSTUS	start_codon	20893149	20893151	.	-	0	transcript_id "Ledus.S1G238200.t3"; gene_id "Ledus.S1G238200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5884.t1 is derived from g3326.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27582086	27584786	.	+	.	Ledus.S1G330500
Ledus.S1	AUGUSTUS	transcript	27582086	27584786	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	start_codon	27582086	27582088	.	+	0	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	CDS	27582086	27582421	0.99	+	0	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	exon	27582086	27582421	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	intron	27582422	27582527	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	CDS	27582528	27582602	0.99	+	0	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	exon	27582528	27582602	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	intron	27582603	27582844	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	CDS	27582845	27582916	1	+	0	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	exon	27582845	27582916	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	intron	27582917	27583000	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	CDS	27583001	27583086	1	+	0	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	exon	27583001	27583086	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	intron	27583087	27583278	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	CDS	27583279	27583399	0.93	+	1	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	exon	27583279	27583399	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	intron	27583400	27583503	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	CDS	27583504	27583622	0.93	+	0	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	exon	27583504	27583622	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	intron	27583623	27583700	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	CDS	27583701	27583763	1	+	1	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	exon	27583701	27583763	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	intron	27583764	27583894	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	CDS	27583895	27584046	1	+	1	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	exon	27583895	27584046	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	intron	27584047	27584146	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	CDS	27584147	27584232	1	+	2	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	exon	27584147	27584232	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	intron	27584233	27584412	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	CDS	27584413	27584537	1	+	0	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	exon	27584413	27584537	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	intron	27584538	27584629	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	CDS	27584630	27584786	0.87	+	1	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	exon	27584630	27584786	.	+	.	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
Ledus.S1	AUGUSTUS	stop_codon	27584787	27584789	.	+	0	transcript_id "Ledus.S1G330500.t1"; gene_id "Ledus.S1G330500"
# This transcript jg3297.t2 is derived from g732.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3297.t3 is derived from g732.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3298.t1 is derived from g733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7366174	7367679	.	-	.	Ledus.S1G071900
Ledus.S1	AUGUSTUS	transcript	7366174	7367679	.	-	.	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	stop_codon	7366171	7366173	.	-	0	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	CDS	7366174	7366779	0.99	-	0	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	exon	7366174	7366779	.	-	.	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	intron	7366780	7366906	.	-	.	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	CDS	7366907	7367079	0.75	-	2	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	exon	7366907	7367079	.	-	.	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	intron	7367080	7367204	.	-	.	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	CDS	7367205	7367293	0.78	-	1	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	exon	7367205	7367293	.	-	.	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	intron	7367294	7367416	.	-	.	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	CDS	7367417	7367679	0.87	-	0	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	exon	7367417	7367679	.	-	.	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	start_codon	7367677	7367679	.	-	0	transcript_id "Ledus.S1G071900.t1"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	transcript	7366174	7367113	.	-	.	transcript_id "Ledus.S1G071900.t2"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	stop_codon	7366171	7366173	.	-	0	transcript_id "Ledus.S1G071900.t2"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	CDS	7366174	7366779	0.96	-	0	transcript_id "Ledus.S1G071900.t2"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	exon	7366174	7366779	.	-	.	transcript_id "Ledus.S1G071900.t2"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	intron	7366780	7366906	.	-	.	transcript_id "Ledus.S1G071900.t2"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	CDS	7366907	7367113	0.64	-	0	transcript_id "Ledus.S1G071900.t2"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	exon	7366907	7367113	.	-	.	transcript_id "Ledus.S1G071900.t2"; gene_id "Ledus.S1G071900"
Ledus.S1	AUGUSTUS	start_codon	7367111	7367113	.	-	0	transcript_id "Ledus.S1G071900.t2"; gene_id "Ledus.S1G071900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5839.t1 is derived from g3281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27248112	27250852	.	+	.	Ledus.S1G326000
Ledus.S1	AUGUSTUS	transcript	27249538	27250852	.	+	.	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	start_codon	27249538	27249540	.	+	0	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27249538	27249819	0.67	+	0	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27249538	27249819	.	+	.	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	intron	27249820	27249894	.	+	.	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27249895	27249957	0.69	+	0	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27249895	27249957	.	+	.	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	intron	27249958	27250053	.	+	.	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27250054	27250215	0.94	+	0	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27250054	27250215	.	+	.	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	intron	27250216	27250315	.	+	.	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27250316	27250424	0.73	+	0	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27250316	27250424	.	+	.	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	intron	27250425	27250519	.	+	.	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27250520	27250560	0.33	+	2	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27250520	27250560	.	+	.	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	intron	27250561	27250774	.	+	.	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27250775	27250852	0.49	+	0	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27250775	27250852	.	+	.	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	stop_codon	27250853	27250855	.	+	0	transcript_id "Ledus.S1G326000.t1"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	transcript	27248112	27250852	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	start_codon	27248112	27248114	.	+	0	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27248112	27248698	0.68	+	0	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27248112	27248698	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	intron	27248699	27248895	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27248896	27249000	0.55	+	1	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27248896	27249000	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	intron	27249001	27249443	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27249444	27249819	0.5	+	1	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27249444	27249819	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	intron	27249820	27249894	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27249895	27249957	0.62	+	0	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27249895	27249957	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	intron	27249958	27250053	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27250054	27250215	0.91	+	0	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27250054	27250215	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	intron	27250216	27250315	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27250316	27250424	0.76	+	0	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27250316	27250424	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	intron	27250425	27250519	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27250520	27250560	0.4	+	2	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27250520	27250560	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	intron	27250561	27250774	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	CDS	27250775	27250852	0.53	+	0	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	exon	27250775	27250852	.	+	.	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
Ledus.S1	AUGUSTUS	stop_codon	27250853	27250855	.	+	0	transcript_id "Ledus.S1G326000.t2"; gene_id "Ledus.S1G326000"
# This transcript jg12048.t2 is derived from g5667.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12049.t1 is derived from g5668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9190569	9191465	.	-	.	Ledus.S4G120500
Ledus.S4	AUGUSTUS	transcript	9190569	9191465	.	-	.	transcript_id "Ledus.S4G120500.t1"; gene_id "Ledus.S4G120500"
Ledus.S4	AUGUSTUS	stop_codon	9190566	9190568	.	-	0	transcript_id "Ledus.S4G120500.t1"; gene_id "Ledus.S4G120500"
Ledus.S4	AUGUSTUS	CDS	9190569	9190938	0.38	-	1	transcript_id "Ledus.S4G120500.t1"; gene_id "Ledus.S4G120500"
Ledus.S4	AUGUSTUS	exon	9190569	9190938	.	-	.	transcript_id "Ledus.S4G120500.t1"; gene_id "Ledus.S4G120500"
Ledus.S4	AUGUSTUS	intron	9190939	9191388	.	-	.	transcript_id "Ledus.S4G120500.t1"; gene_id "Ledus.S4G120500"
Ledus.S4	AUGUSTUS	CDS	9191389	9191465	0.4	-	0	transcript_id "Ledus.S4G120500.t1"; gene_id "Ledus.S4G120500"
Ledus.S4	AUGUSTUS	exon	9191389	9191465	.	-	.	transcript_id "Ledus.S4G120500.t1"; gene_id "Ledus.S4G120500"
Ledus.S4	AUGUSTUS	start_codon	9191463	9191465	.	-	0	transcript_id "Ledus.S4G120500.t1"; gene_id "Ledus.S4G120500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7321.t1 is derived from g11992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1165966	1167916	.	-	.	Ledus.S5G009900
Ledus.S5	AUGUSTUS	transcript	1165966	1167916	.	-	.	transcript_id "Ledus.S5G009900.t1"; gene_id "Ledus.S5G009900"
Ledus.S5	AUGUSTUS	stop_codon	1165963	1165965	.	-	0	transcript_id "Ledus.S5G009900.t1"; gene_id "Ledus.S5G009900"
Ledus.S5	AUGUSTUS	CDS	1165966	1166904	0.98	-	0	transcript_id "Ledus.S5G009900.t1"; gene_id "Ledus.S5G009900"
Ledus.S5	AUGUSTUS	exon	1165966	1166904	.	-	.	transcript_id "Ledus.S5G009900.t1"; gene_id "Ledus.S5G009900"
Ledus.S5	AUGUSTUS	intron	1166905	1166989	.	-	.	transcript_id "Ledus.S5G009900.t1"; gene_id "Ledus.S5G009900"
Ledus.S5	AUGUSTUS	CDS	1166990	1167916	0.94	-	0	transcript_id "Ledus.S5G009900.t1"; gene_id "Ledus.S5G009900"
Ledus.S5	AUGUSTUS	exon	1166990	1167916	.	-	.	transcript_id "Ledus.S5G009900.t1"; gene_id "Ledus.S5G009900"
Ledus.S5	AUGUSTUS	start_codon	1167914	1167916	.	-	0	transcript_id "Ledus.S5G009900.t1"; gene_id "Ledus.S5G009900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5785.t1 is derived from g3227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26766815	26767021	.	+	.	Ledus.S1G320600
Ledus.S1	AUGUSTUS	transcript	26766815	26767021	.	+	.	transcript_id "Ledus.S1G320600.t1"; gene_id "Ledus.S1G320600"
Ledus.S1	AUGUSTUS	start_codon	26766815	26766817	.	+	0	transcript_id "Ledus.S1G320600.t1"; gene_id "Ledus.S1G320600"
Ledus.S1	AUGUSTUS	CDS	26766815	26767021	0.5	+	0	transcript_id "Ledus.S1G320600.t1"; gene_id "Ledus.S1G320600"
Ledus.S1	AUGUSTUS	exon	26766815	26767021	.	+	.	transcript_id "Ledus.S1G320600.t1"; gene_id "Ledus.S1G320600"
Ledus.S1	AUGUSTUS	stop_codon	26767022	26767024	.	+	0	transcript_id "Ledus.S1G320600.t1"; gene_id "Ledus.S1G320600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10941.t1 is derived from g4559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	742697	744178	.	+	.	Ledus.S4G009700
Ledus.S4	AUGUSTUS	transcript	742697	744178	.	+	.	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	start_codon	742697	742699	.	+	0	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	CDS	742697	742951	1	+	0	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	exon	742697	742951	.	+	.	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	intron	742952	743051	.	+	.	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	CDS	743052	743169	1	+	0	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	exon	743052	743169	.	+	.	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	intron	743170	743256	.	+	.	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	CDS	743257	743450	1	+	2	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	exon	743257	743450	.	+	.	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	intron	743451	743534	.	+	.	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	CDS	743535	743721	1	+	0	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	exon	743535	743721	.	+	.	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	intron	743722	743792	.	+	.	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	CDS	743793	743985	1	+	2	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	exon	743793	743985	.	+	.	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	intron	743986	744066	.	+	.	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	CDS	744067	744178	1	+	1	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	exon	744067	744178	.	+	.	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
Ledus.S4	AUGUSTUS	stop_codon	744179	744181	.	+	0	transcript_id "Ledus.S4G009700.t1"; gene_id "Ledus.S4G009700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5085.t1 is derived from g2524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21489426	21491371	.	+	.	Ledus.S1G250600
Ledus.S1	AUGUSTUS	transcript	21489426	21491371	.	+	.	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	start_codon	21489426	21489428	.	+	0	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	CDS	21489426	21489615	0.49	+	0	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	exon	21489426	21489615	.	+	.	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	intron	21489616	21489744	.	+	.	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	CDS	21489745	21490394	1	+	2	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	exon	21489745	21490394	.	+	.	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	intron	21490395	21490567	.	+	.	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	CDS	21490568	21490933	0.94	+	0	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	exon	21490568	21490933	.	+	.	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	intron	21490934	21491152	.	+	.	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	CDS	21491153	21491371	0.98	+	0	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	exon	21491153	21491371	.	+	.	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
Ledus.S1	AUGUSTUS	stop_codon	21491372	21491374	.	+	0	transcript_id "Ledus.S1G250600.t1"; gene_id "Ledus.S1G250600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12980.t1 is derived from g6790.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1518466	1519653	.	-	.	Ledus.S6G004200
Ledus.S6	AUGUSTUS	transcript	1518466	1519653	.	-	.	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	stop_codon	1518463	1518465	.	-	0	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	CDS	1518466	1518615	0.94	-	0	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	exon	1518466	1518615	.	-	.	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	intron	1518616	1518705	.	-	.	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	CDS	1518706	1518829	1	-	1	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	exon	1518706	1518829	.	-	.	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	intron	1518830	1518910	.	-	.	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	CDS	1518911	1519002	1	-	0	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	exon	1518911	1519002	.	-	.	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	intron	1519003	1519096	.	-	.	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	CDS	1519097	1519220	1	-	1	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	exon	1519097	1519220	.	-	.	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	intron	1519221	1519374	.	-	.	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	CDS	1519375	1519448	1	-	0	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	exon	1519375	1519448	.	-	.	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	intron	1519449	1519644	.	-	.	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	CDS	1519645	1519653	0.7	-	0	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	exon	1519645	1519653	.	-	.	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
Ledus.S6	AUGUSTUS	start_codon	1519651	1519653	.	-	0	transcript_id "Ledus.S6G004200.t1"; gene_id "Ledus.S6G004200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8139.t1 is derived from g12810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9330213	9332207	.	-	.	Ledus.S5G091700
Ledus.S5	AUGUSTUS	transcript	9330213	9332207	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	stop_codon	9330210	9330212	.	-	0	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	CDS	9330213	9330614	1	-	0	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	exon	9330213	9330614	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	intron	9330615	9330700	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	CDS	9330701	9330826	1	-	0	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	exon	9330701	9330826	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	intron	9330827	9330903	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	CDS	9330904	9331089	1	-	0	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	exon	9330904	9331089	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	intron	9331090	9331203	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	CDS	9331204	9331421	0.99	-	2	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	exon	9331204	9331421	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	intron	9331422	9331520	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	CDS	9331521	9331640	1	-	2	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	exon	9331521	9331640	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	intron	9331641	9331730	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	CDS	9331731	9331863	1	-	0	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	exon	9331731	9331863	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	intron	9331864	9331955	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	CDS	9331956	9332207	1	-	0	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	exon	9331956	9332207	.	-	.	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
Ledus.S5	AUGUSTUS	start_codon	9332205	9332207	.	-	0	transcript_id "Ledus.S5G091700.t1"; gene_id "Ledus.S5G091700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6503.t1 is derived from g3946.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31701736	31702038	.	+	.	Ledus.S1G392400
Ledus.S1	AUGUSTUS	transcript	31701736	31702038	.	+	.	transcript_id "Ledus.S1G392400.t1"; gene_id "Ledus.S1G392400"
Ledus.S1	AUGUSTUS	start_codon	31701736	31701738	.	+	0	transcript_id "Ledus.S1G392400.t1"; gene_id "Ledus.S1G392400"
Ledus.S1	AUGUSTUS	CDS	31701736	31702038	0.92	+	0	transcript_id "Ledus.S1G392400.t1"; gene_id "Ledus.S1G392400"
Ledus.S1	AUGUSTUS	exon	31701736	31702038	.	+	.	transcript_id "Ledus.S1G392400.t1"; gene_id "Ledus.S1G392400"
Ledus.S1	AUGUSTUS	stop_codon	31702039	31702041	.	+	0	transcript_id "Ledus.S1G392400.t1"; gene_id "Ledus.S1G392400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7938.t1 is derived from g12609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7966077	7967579	.	+	.	Ledus.S5G071600
Ledus.S5	AUGUSTUS	transcript	7966077	7967579	.	+	.	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	start_codon	7966077	7966079	.	+	0	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	CDS	7966077	7966465	0.96	+	0	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	exon	7966077	7966465	.	+	.	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	intron	7966466	7966553	.	+	.	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	CDS	7966554	7966725	1	+	1	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	exon	7966554	7966725	.	+	.	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	intron	7966726	7966813	.	+	.	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	CDS	7966814	7967020	1	+	0	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	exon	7966814	7967020	.	+	.	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	intron	7967021	7967115	.	+	.	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	CDS	7967116	7967351	1	+	0	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	exon	7967116	7967351	.	+	.	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	intron	7967352	7967437	.	+	.	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	CDS	7967438	7967579	0.99	+	1	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	exon	7967438	7967579	.	+	.	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
Ledus.S5	AUGUSTUS	stop_codon	7967580	7967582	.	+	0	transcript_id "Ledus.S5G071600.t1"; gene_id "Ledus.S5G071600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2015.t1 is derived from g8878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14189942	14197114	.	+	.	Ledus.S2G189700
Ledus.S2	AUGUSTUS	transcript	14189942	14197114	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	start_codon	14189942	14189944	.	+	0	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	CDS	14189942	14190032	0.98	+	0	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	exon	14189942	14190032	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	intron	14190033	14190209	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	CDS	14190210	14190268	1	+	2	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	exon	14190210	14190268	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	intron	14190269	14190433	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	CDS	14190434	14190565	1	+	0	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	exon	14190434	14190565	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	intron	14190566	14190651	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	CDS	14190652	14190758	1	+	0	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	exon	14190652	14190758	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	intron	14190759	14190909	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	CDS	14190910	14193262	0.45	+	1	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	exon	14190910	14193262	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	intron	14193263	14193511	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	CDS	14193512	14193684	0.38	+	0	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	exon	14193512	14193684	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	intron	14193685	14193777	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	CDS	14193778	14197114	0.98	+	1	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	exon	14193778	14197114	.	+	.	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
Ledus.S2	AUGUSTUS	stop_codon	14197115	14197117	.	+	0	transcript_id "Ledus.S2G189700.t1"; gene_id "Ledus.S2G189700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1715.t1 is derived from g8576.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12085924	12091196	.	+	.	Ledus.S2G159700
Ledus.S2	AUGUSTUS	transcript	12085924	12091196	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	start_codon	12085924	12085926	.	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12085924	12086097	1	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12085924	12086097	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12086098	12086262	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12086263	12086574	0.92	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12086263	12086574	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12086575	12086689	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12086690	12086962	0.99	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12086690	12086962	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12086963	12087148	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12087149	12087196	1	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12087149	12087196	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12087197	12087307	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12087308	12087373	1	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12087308	12087373	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12087374	12087469	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12087470	12087573	1	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12087470	12087573	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12087574	12087757	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12087758	12087851	0.95	+	1	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12087758	12087851	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12087852	12087956	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12087957	12088013	0.98	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12087957	12088013	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12088014	12088104	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12088105	12088549	0.55	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12088105	12088549	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12088550	12088650	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12088651	12088805	0.98	+	2	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12088651	12088805	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12088806	12089572	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12089573	12089638	1	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12089573	12089638	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12089639	12089727	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12089728	12089796	1	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12089728	12089796	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12089797	12089887	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12089888	12089983	1	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12089888	12089983	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12089984	12090083	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12090084	12090152	1	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12090084	12090152	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12090153	12090300	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12090301	12090347	1	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12090301	12090347	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12090348	12090438	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12090439	12090502	1	+	1	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12090439	12090502	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12090503	12090594	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12090595	12090672	1	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12090595	12090672	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12090673	12090761	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12090762	12090824	1	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12090762	12090824	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12090825	12090929	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12090930	12091013	0.87	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12090930	12091013	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	intron	12091014	12091094	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	CDS	12091095	12091196	1	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	exon	12091095	12091196	.	+	.	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
Ledus.S2	AUGUSTUS	stop_codon	12091197	12091199	.	+	0	transcript_id "Ledus.S2G159700.t1"; gene_id "Ledus.S2G159700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10475.t1 is derived from g11505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15484576	15489421	.	+	.	Ledus.S3G195200
Ledus.S3	AUGUSTUS	transcript	15484576	15489421	.	+	.	transcript_id "Ledus.S3G195200.t1"; gene_id "Ledus.S3G195200"
Ledus.S3	AUGUSTUS	start_codon	15484576	15484578	.	+	0	transcript_id "Ledus.S3G195200.t1"; gene_id "Ledus.S3G195200"
Ledus.S3	AUGUSTUS	CDS	15484576	15485689	0.73	+	0	transcript_id "Ledus.S3G195200.t1"; gene_id "Ledus.S3G195200"
Ledus.S3	AUGUSTUS	exon	15484576	15485689	.	+	.	transcript_id "Ledus.S3G195200.t1"; gene_id "Ledus.S3G195200"
Ledus.S3	AUGUSTUS	intron	15485690	15485777	.	+	.	transcript_id "Ledus.S3G195200.t1"; gene_id "Ledus.S3G195200"
Ledus.S3	AUGUSTUS	CDS	15485778	15487108	1	+	2	transcript_id "Ledus.S3G195200.t1"; gene_id "Ledus.S3G195200"
Ledus.S3	AUGUSTUS	exon	15485778	15487108	.	+	.	transcript_id "Ledus.S3G195200.t1"; gene_id "Ledus.S3G195200"
Ledus.S3	AUGUSTUS	intron	15487109	15488122	.	+	.	transcript_id "Ledus.S3G195200.t1"; gene_id "Ledus.S3G195200"
Ledus.S3	AUGUSTUS	CDS	15488123	15489421	0.92	+	0	transcript_id "Ledus.S3G195200.t1"; gene_id "Ledus.S3G195200"
Ledus.S3	AUGUSTUS	exon	15488123	15489421	.	+	.	transcript_id "Ledus.S3G195200.t1"; gene_id "Ledus.S3G195200"
Ledus.S3	AUGUSTUS	stop_codon	15489422	15489424	.	+	0	transcript_id "Ledus.S3G195200.t1"; gene_id "Ledus.S3G195200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9123.t1 is derived from g10153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4693667	4699062	.	-	.	Ledus.S3G060000
Ledus.S3	AUGUSTUS	transcript	4693667	4697738	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	stop_codon	4693664	4693666	.	-	0	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4693667	4695022	1	-	0	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4693667	4695022	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4695023	4695109	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4695110	4695718	0.99	-	0	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4695110	4695718	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4695719	4695833	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4695834	4695885	1	-	1	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4695834	4695885	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4695886	4695971	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4695972	4696045	1	-	0	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4695972	4696045	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4696046	4696144	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4696145	4696194	0.86	-	2	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4696145	4696194	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4696195	4696307	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4696308	4696389	1	-	0	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4696308	4696389	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4696390	4696489	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4696490	4696539	1	-	2	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4696490	4696539	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4696540	4696809	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4696810	4696852	1	-	0	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4696810	4696852	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4696853	4696938	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4696939	4697019	1	-	0	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4696939	4697019	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4697020	4697103	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4697104	4697149	1	-	1	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4697104	4697149	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4697150	4697246	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4697247	4697293	1	-	0	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4697247	4697293	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4697294	4697362	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4697363	4697428	1	-	0	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4697363	4697428	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4697429	4697502	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4697503	4697569	1	-	1	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4697503	4697569	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4697570	4697658	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4697659	4697738	0.59	-	0	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4697659	4697738	.	-	.	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	start_codon	4697736	4697738	.	-	0	transcript_id "Ledus.S3G060000.t1"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	transcript	4693667	4699062	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	stop_codon	4693664	4693666	.	-	0	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4693667	4695022	1	-	0	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4693667	4695022	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4695023	4695109	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4695110	4695718	0.99	-	0	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4695110	4695718	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4695719	4695833	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4695834	4695885	1	-	1	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4695834	4695885	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4695886	4695971	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4695972	4696045	1	-	0	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4695972	4696045	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4696046	4696144	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4696145	4696194	0.91	-	2	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4696145	4696194	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4696195	4696307	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4696308	4696389	1	-	0	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4696308	4696389	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4696390	4696489	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4696490	4696539	1	-	2	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4696490	4696539	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4696540	4696809	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4696810	4696852	1	-	0	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4696810	4696852	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4696853	4696938	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4696939	4697019	1	-	0	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4696939	4697019	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4697020	4697103	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4697104	4697149	1	-	1	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4697104	4697149	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4697150	4697246	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4697247	4697293	1	-	0	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4697247	4697293	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4697294	4697362	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4697363	4697428	1	-	0	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4697363	4697428	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4697429	4697502	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4697503	4697569	1	-	1	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4697503	4697569	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4697570	4698042	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4698043	4698145	0.39	-	2	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4698043	4698145	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4698146	4698224	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4698225	4698275	0.26	-	2	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4698225	4698275	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4698276	4698624	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4698625	4698682	0.34	-	0	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4698625	4698682	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	intron	4698683	4699020	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	CDS	4699021	4699062	0.68	-	0	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	exon	4699021	4699062	.	-	.	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
Ledus.S3	AUGUSTUS	start_codon	4699060	4699062	.	-	0	transcript_id "Ledus.S3G060000.t2"; gene_id "Ledus.S3G060000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9515.t1 is derived from g10545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7535388	7536432	.	+	.	Ledus.S3G099200
Ledus.S3	AUGUSTUS	transcript	7535388	7536432	.	+	.	transcript_id "Ledus.S3G099200.t1"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	start_codon	7535388	7535390	.	+	0	transcript_id "Ledus.S3G099200.t1"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	CDS	7535388	7535457	0.94	+	0	transcript_id "Ledus.S3G099200.t1"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	exon	7535388	7535457	.	+	.	transcript_id "Ledus.S3G099200.t1"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	intron	7535458	7535516	.	+	.	transcript_id "Ledus.S3G099200.t1"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	CDS	7535517	7535578	0.99	+	2	transcript_id "Ledus.S3G099200.t1"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	exon	7535517	7535578	.	+	.	transcript_id "Ledus.S3G099200.t1"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	intron	7535579	7536033	.	+	.	transcript_id "Ledus.S3G099200.t1"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	CDS	7536034	7536432	0.99	+	0	transcript_id "Ledus.S3G099200.t1"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	exon	7536034	7536432	.	+	.	transcript_id "Ledus.S3G099200.t1"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	stop_codon	7536433	7536435	.	+	0	transcript_id "Ledus.S3G099200.t1"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	transcript	7535388	7536242	.	+	.	transcript_id "Ledus.S3G099200.t2"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	start_codon	7535388	7535390	.	+	0	transcript_id "Ledus.S3G099200.t2"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	CDS	7535388	7535457	0.94	+	0	transcript_id "Ledus.S3G099200.t2"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	exon	7535388	7535457	.	+	.	transcript_id "Ledus.S3G099200.t2"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	intron	7535458	7535554	.	+	.	transcript_id "Ledus.S3G099200.t2"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	CDS	7535555	7535578	0.95	+	2	transcript_id "Ledus.S3G099200.t2"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	exon	7535555	7535578	.	+	.	transcript_id "Ledus.S3G099200.t2"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	intron	7535579	7536033	.	+	.	transcript_id "Ledus.S3G099200.t2"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	CDS	7536034	7536242	0.95	+	2	transcript_id "Ledus.S3G099200.t2"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	exon	7536034	7536242	.	+	.	transcript_id "Ledus.S3G099200.t2"; gene_id "Ledus.S3G099200"
Ledus.S3	AUGUSTUS	stop_codon	7536243	7536245	.	+	0	transcript_id "Ledus.S3G099200.t2"; gene_id "Ledus.S3G099200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12076.t1 is derived from g5695.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9361695	9367888	.	-	.	Ledus.S4G123200
Ledus.S4	AUGUSTUS	transcript	9361695	9367888	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	stop_codon	9361692	9361694	.	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9361695	9361796	0.79	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9361695	9361796	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9361797	9361962	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9361963	9362064	1	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9361963	9362064	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9362065	9362279	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9362280	9362375	1	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9362280	9362375	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9362376	9362454	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9362455	9362598	0.88	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9362455	9362598	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9362599	9362710	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9362711	9362758	0.89	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9362711	9362758	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9362759	9362836	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9362837	9362938	1	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9362837	9362938	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9362939	9363024	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9363025	9363200	1	-	2	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9363025	9363200	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9363201	9363315	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9363316	9363385	1	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9363316	9363385	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9363386	9363986	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9363987	9364198	1	-	2	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9363987	9364198	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9364199	9364287	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9364288	9364458	1	-	2	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9364288	9364458	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9364459	9364547	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9364548	9364619	1	-	2	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9364548	9364619	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9364620	9364745	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9364746	9364810	1	-	1	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9364746	9364810	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9364811	9364966	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9364967	9365062	1	-	1	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9364967	9365062	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9365063	9365184	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9365185	9365285	1	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9365185	9365285	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9365286	9365498	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9365499	9365542	0.99	-	2	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9365499	9365542	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9365543	9365850	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9365851	9365976	1	-	2	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9365851	9365976	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9365977	9366302	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9366303	9366379	1	-	1	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9366303	9366379	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9366380	9366500	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9366501	9366556	1	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9366501	9366556	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9366557	9366648	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9366649	9366714	1	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9366649	9366714	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9366715	9366850	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9366851	9366904	1	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9366851	9366904	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9366905	9367050	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9367051	9367125	1	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9367051	9367125	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9367126	9367300	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9367301	9367559	1	-	1	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9367301	9367559	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9367560	9367817	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9367818	9367888	0.4	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9367818	9367888	.	-	.	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	start_codon	9367886	9367888	.	-	0	transcript_id "Ledus.S4G123200.t1"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	transcript	9361695	9367888	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	stop_codon	9361692	9361694	.	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9361695	9361796	0.74	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9361695	9361796	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9361797	9361962	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9361963	9362064	1	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9361963	9362064	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9362065	9362279	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9362280	9362375	1	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9362280	9362375	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9362376	9362454	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9362455	9362598	0.88	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9362455	9362598	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9362599	9362710	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9362711	9362758	0.88	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9362711	9362758	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9362759	9362836	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9362837	9362938	1	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9362837	9362938	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9362939	9363024	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9363025	9363200	1	-	2	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9363025	9363200	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9363201	9363315	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9363316	9363385	1	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9363316	9363385	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9363386	9363549	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9363550	9363657	1	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9363550	9363657	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9363658	9363986	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9363987	9364198	1	-	2	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9363987	9364198	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9364199	9364287	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9364288	9364458	1	-	2	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9364288	9364458	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9364459	9364547	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9364548	9364619	1	-	2	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9364548	9364619	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9364620	9364745	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9364746	9364810	1	-	1	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9364746	9364810	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9364811	9364966	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9364967	9365062	1	-	1	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9364967	9365062	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9365063	9365184	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9365185	9365285	1	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9365185	9365285	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9365286	9365498	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9365499	9365533	1	-	2	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9365499	9365533	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9365534	9365850	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9365851	9365976	1	-	2	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9365851	9365976	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9365977	9366302	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9366303	9366379	1	-	1	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9366303	9366379	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9366380	9366500	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9366501	9366556	1	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9366501	9366556	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9366557	9366648	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9366649	9366714	1	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9366649	9366714	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9366715	9366850	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9366851	9366904	1	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9366851	9366904	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9366905	9367050	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9367051	9367125	1	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9367051	9367125	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9367126	9367300	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9367301	9367559	1	-	1	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9367301	9367559	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	intron	9367560	9367817	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	CDS	9367818	9367888	0.36	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	exon	9367818	9367888	.	-	.	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
Ledus.S4	AUGUSTUS	start_codon	9367886	9367888	.	-	0	transcript_id "Ledus.S4G123200.t2"; gene_id "Ledus.S4G123200"
# This transcript jg9481.t2 is derived from g10511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9481.t3 is derived from g10511.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9482.t1 is derived from g10512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7301436	7303381	.	+	.	Ledus.S3G095900
Ledus.S3	AUGUSTUS	transcript	7301436	7303381	.	+	.	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	start_codon	7301436	7301438	.	+	0	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	CDS	7301436	7301454	0.86	+	0	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	exon	7301436	7301454	.	+	.	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	intron	7301455	7301524	.	+	.	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	CDS	7301525	7301610	0.72	+	2	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	exon	7301525	7301610	.	+	.	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	intron	7301611	7301750	.	+	.	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	CDS	7301751	7301804	0.87	+	0	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	exon	7301751	7301804	.	+	.	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	intron	7301805	7301888	.	+	.	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	CDS	7301889	7301973	1	+	0	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	exon	7301889	7301973	.	+	.	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	intron	7301974	7302283	.	+	.	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	CDS	7302284	7302333	0.96	+	2	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	exon	7302284	7302333	.	+	.	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	intron	7302334	7302397	.	+	.	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	CDS	7302398	7303381	0.99	+	0	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	exon	7302398	7303381	.	+	.	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
Ledus.S3	AUGUSTUS	stop_codon	7303382	7303384	.	+	0	transcript_id "Ledus.S3G095900.t1"; gene_id "Ledus.S3G095900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8252.t1 is derived from g12923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10164548	10165754	.	+	.	Ledus.S5G103000
Ledus.S5	AUGUSTUS	transcript	10164548	10165754	.	+	.	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	start_codon	10164548	10164550	.	+	0	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	CDS	10164548	10164987	0.94	+	0	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	exon	10164548	10164987	.	+	.	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	intron	10164988	10165187	.	+	.	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	CDS	10165188	10165261	1	+	1	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	exon	10165188	10165261	.	+	.	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	intron	10165262	10165379	.	+	.	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	CDS	10165380	10165451	0.92	+	2	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	exon	10165380	10165451	.	+	.	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	intron	10165452	10165565	.	+	.	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	CDS	10165566	10165592	0.92	+	2	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	exon	10165566	10165592	.	+	.	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	intron	10165593	10165680	.	+	.	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	CDS	10165681	10165754	0.91	+	2	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	exon	10165681	10165754	.	+	.	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
Ledus.S5	AUGUSTUS	stop_codon	10165755	10165757	.	+	0	transcript_id "Ledus.S5G103000.t1"; gene_id "Ledus.S5G103000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7617.t1 is derived from g12288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4397875	4400581	.	+	.	Ledus.S5G039500
Ledus.S5	AUGUSTUS	transcript	4397875	4400581	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	start_codon	4397875	4397877	.	+	0	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	CDS	4397875	4398246	0.69	+	0	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	exon	4397875	4398246	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	intron	4398247	4398333	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	CDS	4398334	4398441	1	+	0	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	exon	4398334	4398441	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	intron	4398442	4398537	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	CDS	4398538	4398623	1	+	0	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	exon	4398538	4398623	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	intron	4398624	4398751	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	CDS	4398752	4399158	0.99	+	1	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	exon	4398752	4399158	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	intron	4399159	4399286	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	CDS	4399287	4399462	0.86	+	2	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	exon	4399287	4399462	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	intron	4399463	4399583	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	CDS	4399584	4399672	0.86	+	0	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	exon	4399584	4399672	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	intron	4399673	4399749	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	CDS	4399750	4399883	1	+	1	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	exon	4399750	4399883	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	intron	4399884	4400009	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	CDS	4400010	4400312	0.9	+	2	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	exon	4400010	4400312	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	intron	4400313	4400408	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	CDS	4400409	4400581	0.94	+	2	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	exon	4400409	4400581	.	+	.	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
Ledus.S5	AUGUSTUS	stop_codon	4400582	4400584	.	+	0	transcript_id "Ledus.S5G039500.t1"; gene_id "Ledus.S5G039500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6592.t1 is derived from g4035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32563438	32565335	.	-	.	Ledus.S1G401300
Ledus.S1	AUGUSTUS	transcript	32563438	32565335	.	-	.	transcript_id "Ledus.S1G401300.t1"; gene_id "Ledus.S1G401300"
Ledus.S1	AUGUSTUS	stop_codon	32563435	32563437	.	-	0	transcript_id "Ledus.S1G401300.t1"; gene_id "Ledus.S1G401300"
Ledus.S1	AUGUSTUS	CDS	32563438	32564483	1	-	2	transcript_id "Ledus.S1G401300.t1"; gene_id "Ledus.S1G401300"
Ledus.S1	AUGUSTUS	exon	32563438	32564483	.	-	.	transcript_id "Ledus.S1G401300.t1"; gene_id "Ledus.S1G401300"
Ledus.S1	AUGUSTUS	intron	32564484	32565307	.	-	.	transcript_id "Ledus.S1G401300.t1"; gene_id "Ledus.S1G401300"
Ledus.S1	AUGUSTUS	CDS	32565308	32565335	1	-	0	transcript_id "Ledus.S1G401300.t1"; gene_id "Ledus.S1G401300"
Ledus.S1	AUGUSTUS	exon	32565308	32565335	.	-	.	transcript_id "Ledus.S1G401300.t1"; gene_id "Ledus.S1G401300"
Ledus.S1	AUGUSTUS	start_codon	32565333	32565335	.	-	0	transcript_id "Ledus.S1G401300.t1"; gene_id "Ledus.S1G401300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg4779.t1 is derived from g2217.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19698633	19705746	.	-	.	Ledus.S1G220000
Ledus.S1	AUGUSTUS	transcript	19698633	19705746	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	stop_codon	19698630	19698632	.	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19698633	19698750	0.78	-	1	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19698633	19698750	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19698751	19698846	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19698847	19698878	0.68	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19698847	19698878	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19698879	19699046	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699047	19699133	0.69	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699047	19699133	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19699134	19699315	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699316	19699486	1	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699316	19699486	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19699487	19699643	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699644	19699766	1	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699644	19699766	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19699767	19699910	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699911	19700639	1	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699911	19700639	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19700640	19700737	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19700738	19701172	0.99	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19700738	19701172	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19701173	19701269	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19701270	19701502	1	-	2	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19701270	19701502	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19701503	19701641	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19701642	19702314	0.94	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19701642	19702314	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19702315	19702775	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19702776	19702847	1	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19702776	19702847	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19702848	19702949	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19702950	19703114	0.99	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19702950	19703114	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19703115	19703275	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19703276	19703586	0.9	-	2	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19703276	19703586	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19703587	19703664	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19703665	19703734	1	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19703665	19703734	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19703735	19703993	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19703994	19704197	1	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19703994	19704197	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704198	19704329	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19704330	19704416	1	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19704330	19704416	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704417	19704609	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19704610	19704731	0.98	-	2	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19704610	19704731	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704732	19704849	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19704850	19704943	0.79	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19704850	19704943	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704944	19705014	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19705015	19705146	0.57	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19705015	19705146	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19705147	19705620	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19705621	19705746	0.89	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19705621	19705746	.	-	.	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	start_codon	19705744	19705746	.	-	0	transcript_id "Ledus.S1G220000.t1"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	transcript	19698633	19705746	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	stop_codon	19698630	19698632	.	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19698633	19698750	0.87	-	1	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19698633	19698750	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19698751	19698846	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19698847	19698878	0.84	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19698847	19698878	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19698879	19698964	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19698965	19698969	0.88	-	2	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19698965	19698969	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19698970	19699029	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699030	19699084	0.63	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699030	19699084	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19699085	19699315	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699316	19699486	0.99	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699316	19699486	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19699487	19699643	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699644	19699766	1	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699644	19699766	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19699767	19699910	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699911	19700639	1	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699911	19700639	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19700640	19700737	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19700738	19701172	1	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19700738	19701172	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19701173	19701269	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19701270	19701502	1	-	2	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19701270	19701502	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19701503	19701641	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19701642	19702314	0.99	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19701642	19702314	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19702315	19702775	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19702776	19702847	1	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19702776	19702847	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19702848	19702949	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19702950	19703114	0.97	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19702950	19703114	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19703115	19703275	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19703276	19703586	0.89	-	2	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19703276	19703586	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19703587	19703664	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19703665	19703734	1	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19703665	19703734	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19703735	19703993	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19703994	19704197	1	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19703994	19704197	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704198	19704329	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19704330	19704416	1	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19704330	19704416	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704417	19704609	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19704610	19704731	0.98	-	2	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19704610	19704731	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704732	19704849	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19704850	19704943	0.81	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19704850	19704943	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704944	19705014	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19705015	19705146	0.56	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19705015	19705146	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19705147	19705620	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19705621	19705746	0.87	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19705621	19705746	.	-	.	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	start_codon	19705744	19705746	.	-	0	transcript_id "Ledus.S1G220000.t2"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	transcript	19698633	19705746	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	stop_codon	19698630	19698632	.	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19698633	19698750	0.76	-	1	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19698633	19698750	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19698751	19698846	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19698847	19698878	0.65	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19698847	19698878	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19698879	19699046	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699047	19699133	0.67	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699047	19699133	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19699134	19699315	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699316	19699486	1	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699316	19699486	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19699487	19699643	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699644	19699766	1	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699644	19699766	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19699767	19699910	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699911	19700639	1	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699911	19700639	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19700640	19700737	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19700738	19701172	1	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19700738	19701172	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19701173	19701269	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19701270	19701502	1	-	2	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19701270	19701502	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19701503	19701641	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19701642	19702317	0.97	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19701642	19702317	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19702318	19702775	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19702776	19702847	1	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19702776	19702847	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19702848	19702949	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19702950	19703114	0.97	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19702950	19703114	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19703115	19703275	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19703276	19703586	0.89	-	2	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19703276	19703586	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19703587	19703664	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19703665	19703734	1	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19703665	19703734	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19703735	19703993	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19703994	19704197	1	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19703994	19704197	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704198	19704329	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19704330	19704416	1	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19704330	19704416	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704417	19704609	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19704610	19704731	1	-	2	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19704610	19704731	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704732	19704849	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19704850	19704943	0.83	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19704850	19704943	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704944	19705014	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19705015	19705146	0.57	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19705015	19705146	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19705147	19705620	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19705621	19705746	0.9	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19705621	19705746	.	-	.	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	start_codon	19705744	19705746	.	-	0	transcript_id "Ledus.S1G220000.t3"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	transcript	19698633	19705746	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	stop_codon	19698630	19698632	.	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19698633	19698750	0.62	-	1	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19698633	19698750	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19698751	19698846	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19698847	19698878	0.45	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19698847	19698878	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19698879	19699046	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699047	19699133	0.52	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699047	19699133	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19699134	19699315	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699316	19699486	1	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699316	19699486	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19699487	19699643	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699644	19699766	1	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699644	19699766	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19699767	19699910	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19699911	19700639	0.99	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19699911	19700639	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19700640	19700737	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19700738	19701172	0.99	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19700738	19701172	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19701173	19701269	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19701270	19701502	1	-	2	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19701270	19701502	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19701503	19701641	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19701642	19702509	0.69	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19701642	19702509	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19702510	19702775	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19702776	19702847	1	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19702776	19702847	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19702848	19702949	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19702950	19703114	0.99	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19702950	19703114	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19703115	19703275	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19703276	19703586	0.91	-	2	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19703276	19703586	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19703587	19703664	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19703665	19703734	1	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19703665	19703734	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19703735	19703993	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19703994	19704197	1	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19703994	19704197	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704198	19704329	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19704330	19704416	1	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19704330	19704416	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704417	19704609	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19704610	19704731	0.98	-	2	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19704610	19704731	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704732	19704849	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19704850	19704943	0.81	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19704850	19704943	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19704944	19705014	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19705015	19705146	0.53	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19705015	19705146	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	intron	19705147	19705620	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	CDS	19705621	19705746	0.88	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	exon	19705621	19705746	.	-	.	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
Ledus.S1	AUGUSTUS	start_codon	19705744	19705746	.	-	0	transcript_id "Ledus.S1G220000.t4"; gene_id "Ledus.S1G220000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8394.t1 is derived from g13066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11463898	11464599	.	+	.	Ledus.S5G117200
Ledus.S5	AUGUSTUS	transcript	11463898	11464599	.	+	.	transcript_id "Ledus.S5G117200.t1"; gene_id "Ledus.S5G117200"
Ledus.S5	AUGUSTUS	start_codon	11463898	11463900	.	+	0	transcript_id "Ledus.S5G117200.t1"; gene_id "Ledus.S5G117200"
Ledus.S5	AUGUSTUS	CDS	11463898	11464599	0.54	+	0	transcript_id "Ledus.S5G117200.t1"; gene_id "Ledus.S5G117200"
Ledus.S5	AUGUSTUS	exon	11463898	11464599	.	+	.	transcript_id "Ledus.S5G117200.t1"; gene_id "Ledus.S5G117200"
Ledus.S5	AUGUSTUS	stop_codon	11464600	11464602	.	+	0	transcript_id "Ledus.S5G117200.t1"; gene_id "Ledus.S5G117200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg403.t1 is derived from g7264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2232079	2234154	.	+	.	Ledus.S2G028500
Ledus.S2	AUGUSTUS	transcript	2232079	2234154	.	+	.	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	start_codon	2232079	2232081	.	+	0	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	CDS	2232079	2232996	1	+	0	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	exon	2232079	2232996	.	+	.	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	intron	2232997	2233189	.	+	.	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	CDS	2233190	2233580	1	+	0	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	exon	2233190	2233580	.	+	.	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	intron	2233581	2233689	.	+	.	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	CDS	2233690	2233791	1	+	2	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	exon	2233690	2233791	.	+	.	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	intron	2233792	2233912	.	+	.	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	CDS	2233913	2234154	1	+	2	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	exon	2233913	2234154	.	+	.	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
Ledus.S2	AUGUSTUS	stop_codon	2234155	2234157	.	+	0	transcript_id "Ledus.S2G028500.t1"; gene_id "Ledus.S2G028500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11984.t1 is derived from g5603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8299032	8300373	.	+	.	Ledus.S4G114000
Ledus.S4	AUGUSTUS	transcript	8299032	8300373	.	+	.	transcript_id "Ledus.S4G114000.t1"; gene_id "Ledus.S4G114000"
Ledus.S4	AUGUSTUS	start_codon	8299032	8299034	.	+	0	transcript_id "Ledus.S4G114000.t1"; gene_id "Ledus.S4G114000"
Ledus.S4	AUGUSTUS	CDS	8299032	8299114	0.54	+	0	transcript_id "Ledus.S4G114000.t1"; gene_id "Ledus.S4G114000"
Ledus.S4	AUGUSTUS	exon	8299032	8299114	.	+	.	transcript_id "Ledus.S4G114000.t1"; gene_id "Ledus.S4G114000"
Ledus.S4	AUGUSTUS	intron	8299115	8299265	.	+	.	transcript_id "Ledus.S4G114000.t1"; gene_id "Ledus.S4G114000"
Ledus.S4	AUGUSTUS	CDS	8299266	8299392	1	+	1	transcript_id "Ledus.S4G114000.t1"; gene_id "Ledus.S4G114000"
Ledus.S4	AUGUSTUS	exon	8299266	8299392	.	+	.	transcript_id "Ledus.S4G114000.t1"; gene_id "Ledus.S4G114000"
Ledus.S4	AUGUSTUS	intron	8299393	8299545	.	+	.	transcript_id "Ledus.S4G114000.t1"; gene_id "Ledus.S4G114000"
Ledus.S4	AUGUSTUS	CDS	8299546	8300373	0.79	+	0	transcript_id "Ledus.S4G114000.t1"; gene_id "Ledus.S4G114000"
Ledus.S4	AUGUSTUS	exon	8299546	8300373	.	+	.	transcript_id "Ledus.S4G114000.t1"; gene_id "Ledus.S4G114000"
Ledus.S4	AUGUSTUS	stop_codon	8300374	8300376	.	+	0	transcript_id "Ledus.S4G114000.t1"; gene_id "Ledus.S4G114000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10045.t1 is derived from g11075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12167655	12168872	.	+	.	Ledus.S3G152200
Ledus.S3	AUGUSTUS	transcript	12167655	12168872	.	+	.	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	start_codon	12167655	12167657	.	+	0	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	CDS	12167655	12167825	0.85	+	0	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	exon	12167655	12167825	.	+	.	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	intron	12167826	12167950	.	+	.	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	CDS	12167951	12168071	1	+	0	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	exon	12167951	12168071	.	+	.	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	intron	12168072	12168161	.	+	.	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	CDS	12168162	12168217	1	+	2	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	exon	12168162	12168217	.	+	.	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	intron	12168218	12168368	.	+	.	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	CDS	12168369	12168527	0.77	+	0	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	exon	12168369	12168527	.	+	.	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	intron	12168528	12168636	.	+	.	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	CDS	12168637	12168722	0.44	+	0	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	exon	12168637	12168722	.	+	.	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	intron	12168723	12168820	.	+	.	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	CDS	12168821	12168872	0.99	+	1	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	exon	12168821	12168872	.	+	.	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
Ledus.S3	AUGUSTUS	stop_codon	12168873	12168875	.	+	0	transcript_id "Ledus.S3G152200.t1"; gene_id "Ledus.S3G152200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1494.t1 is derived from g8355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10583258	10585250	.	+	.	Ledus.S2G137600
Ledus.S2	AUGUSTUS	transcript	10583258	10585250	.	+	.	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	start_codon	10583258	10583260	.	+	0	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	CDS	10583258	10583733	0.57	+	0	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	exon	10583258	10583733	.	+	.	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	intron	10583734	10583823	.	+	.	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	CDS	10583824	10583941	1	+	1	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	exon	10583824	10583941	.	+	.	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	intron	10583942	10584226	.	+	.	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	CDS	10584227	10584374	1	+	0	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	exon	10584227	10584374	.	+	.	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	intron	10584375	10584451	.	+	.	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	CDS	10584452	10584600	1	+	2	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	exon	10584452	10584600	.	+	.	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	intron	10584601	10584686	.	+	.	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	CDS	10584687	10584838	1	+	0	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	exon	10584687	10584838	.	+	.	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	intron	10584839	10584922	.	+	.	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	CDS	10584923	10585250	0.85	+	1	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	exon	10584923	10585250	.	+	.	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
Ledus.S2	AUGUSTUS	stop_codon	10585251	10585253	.	+	0	transcript_id "Ledus.S2G137600.t1"; gene_id "Ledus.S2G137600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4064.t1 is derived from g1500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14416148	14418386	.	+	.	Ledus.S1G148500
Ledus.S1	AUGUSTUS	transcript	14416148	14418386	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	start_codon	14416148	14416150	.	+	0	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	CDS	14416148	14416241	0.86	+	0	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	exon	14416148	14416241	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	intron	14416242	14416344	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	CDS	14416345	14416394	0.84	+	2	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	exon	14416345	14416394	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	intron	14416395	14416496	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	CDS	14416497	14416552	1	+	0	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	exon	14416497	14416552	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	intron	14416553	14416757	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	CDS	14416758	14416773	1	+	1	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	exon	14416758	14416773	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	intron	14416774	14416914	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	CDS	14416915	14416962	1	+	0	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	exon	14416915	14416962	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	intron	14416963	14417122	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	CDS	14417123	14417187	1	+	0	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	exon	14417123	14417187	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	intron	14417188	14417378	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	CDS	14417379	14417562	0.7	+	1	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	exon	14417379	14417562	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	intron	14417563	14417655	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	CDS	14417656	14417739	1	+	0	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	exon	14417656	14417739	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	intron	14417740	14417871	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	CDS	14417872	14418009	1	+	0	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	exon	14417872	14418009	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	intron	14418010	14418122	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	CDS	14418123	14418191	1	+	0	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	exon	14418123	14418191	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	intron	14418192	14418278	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	CDS	14418279	14418386	0.94	+	0	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	exon	14418279	14418386	.	+	.	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
Ledus.S1	AUGUSTUS	stop_codon	14418387	14418389	.	+	0	transcript_id "Ledus.S1G148500.t1"; gene_id "Ledus.S1G148500"
# This transcript jg3153.t2 is derived from g588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3154.t1 is derived from g589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6358950	6363490	.	-	.	Ledus.S1G057500
Ledus.S1	AUGUSTUS	transcript	6358950	6363490	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	stop_codon	6358947	6358949	.	-	0	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	CDS	6358950	6359303	1	-	0	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	exon	6358950	6359303	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	intron	6359304	6359391	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	CDS	6359392	6359585	1	-	2	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	exon	6359392	6359585	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	intron	6359586	6359672	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	CDS	6359673	6359799	1	-	0	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	exon	6359673	6359799	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	intron	6359800	6359936	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	CDS	6359937	6360047	1	-	0	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	exon	6359937	6360047	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	intron	6360048	6360164	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	CDS	6360165	6360236	1	-	0	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	exon	6360165	6360236	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	intron	6360237	6360329	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	CDS	6360330	6360419	1	-	0	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	exon	6360330	6360419	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	intron	6360420	6360538	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	CDS	6360539	6360649	0.59	-	0	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	exon	6360539	6360649	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	intron	6360650	6360828	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	CDS	6360829	6361383	0.98	-	0	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	exon	6360829	6361383	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	intron	6361384	6361503	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	CDS	6361504	6362577	0.97	-	0	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	exon	6361504	6362577	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	intron	6362578	6362888	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	CDS	6362889	6362921	1	-	0	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	exon	6362889	6362921	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	intron	6362922	6363021	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	CDS	6363022	6363071	1	-	2	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	exon	6363022	6363071	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	intron	6363072	6363447	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	CDS	6363448	6363490	0.98	-	0	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	exon	6363448	6363490	.	-	.	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
Ledus.S1	AUGUSTUS	start_codon	6363488	6363490	.	-	0	transcript_id "Ledus.S1G057500.t1"; gene_id "Ledus.S1G057500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1582.t1 is derived from g8443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11113466	11113969	.	+	.	Ledus.S2G146400
Ledus.S2	AUGUSTUS	transcript	11113466	11113969	.	+	.	transcript_id "Ledus.S2G146400.t1"; gene_id "Ledus.S2G146400"
Ledus.S2	AUGUSTUS	start_codon	11113466	11113468	.	+	0	transcript_id "Ledus.S2G146400.t1"; gene_id "Ledus.S2G146400"
Ledus.S2	AUGUSTUS	CDS	11113466	11113969	0.53	+	0	transcript_id "Ledus.S2G146400.t1"; gene_id "Ledus.S2G146400"
Ledus.S2	AUGUSTUS	exon	11113466	11113969	.	+	.	transcript_id "Ledus.S2G146400.t1"; gene_id "Ledus.S2G146400"
Ledus.S2	AUGUSTUS	stop_codon	11113970	11113972	.	+	0	transcript_id "Ledus.S2G146400.t1"; gene_id "Ledus.S2G146400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1230.t1 is derived from g8091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8751425	8753771	.	-	.	Ledus.S2G111200
Ledus.S2	AUGUSTUS	transcript	8751425	8753771	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	stop_codon	8751422	8751424	.	-	0	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	CDS	8751425	8751482	1	-	1	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	exon	8751425	8751482	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	intron	8751483	8751557	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	CDS	8751558	8751689	0.98	-	1	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	exon	8751558	8751689	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	intron	8751690	8751804	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	CDS	8751805	8751885	0.96	-	1	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	exon	8751805	8751885	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	intron	8751886	8752041	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	CDS	8752042	8752108	1	-	2	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	exon	8752042	8752108	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	intron	8752109	8752222	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	CDS	8752223	8752281	0.95	-	1	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	exon	8752223	8752281	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	intron	8752282	8752400	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	CDS	8752401	8752576	0.95	-	0	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	exon	8752401	8752576	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	intron	8752577	8752691	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	CDS	8752692	8752754	1	-	0	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	exon	8752692	8752754	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	intron	8752755	8752858	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	CDS	8752859	8752982	1	-	1	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	exon	8752859	8752982	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	intron	8752983	8753073	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	CDS	8753074	8753183	1	-	0	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	exon	8753074	8753183	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	intron	8753184	8753300	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	CDS	8753301	8753377	1	-	2	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	exon	8753301	8753377	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	intron	8753378	8753455	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	CDS	8753456	8753771	0.94	-	0	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	exon	8753456	8753771	.	-	.	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
Ledus.S2	AUGUSTUS	start_codon	8753769	8753771	.	-	0	transcript_id "Ledus.S2G111200.t1"; gene_id "Ledus.S2G111200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12588.t1 is derived from g6210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13012056	13018559	.	+	.	Ledus.S4G174400
Ledus.S4	AUGUSTUS	transcript	13012056	13018559	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	start_codon	13012056	13012058	.	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13012056	13012121	1	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13012056	13012121	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13012122	13012671	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13012672	13012782	1	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13012672	13012782	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13012783	13012939	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13012940	13013107	1	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13012940	13013107	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13013108	13013304	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13013305	13013377	0.66	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13013305	13013377	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13013378	13013438	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13013439	13013553	0.73	+	2	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13013439	13013553	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13013554	13013643	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13013644	13014279	0.62	+	1	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13013644	13014279	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13014280	13014545	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13014546	13014746	0.95	+	1	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13014546	13014746	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13014747	13015144	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13015145	13015217	1	+	1	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13015145	13015217	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13015218	13015339	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13015340	13015383	1	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13015340	13015383	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13015384	13015481	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13015482	13015524	1	+	1	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13015482	13015524	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13015525	13015654	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13015655	13016182	1	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13015655	13016182	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13016183	13016445	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13016446	13016517	1	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13016446	13016517	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13016518	13016635	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13016636	13016680	1	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13016636	13016680	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13016681	13016849	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13016850	13016926	1	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13016850	13016926	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13016927	13017056	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13017057	13017121	1	+	1	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13017057	13017121	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13017122	13017213	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13017214	13017280	1	+	2	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13017214	13017280	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13017281	13017447	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13017448	13017561	1	+	1	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13017448	13017561	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13017562	13017678	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13017679	13017752	0.9	+	1	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13017679	13017752	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13017753	13017852	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13017853	13017950	0.99	+	2	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13017853	13017950	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13017951	13018054	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13018055	13018120	1	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13018055	13018120	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13018121	13018218	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13018219	13018290	1	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13018219	13018290	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13018291	13018363	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13018364	13018417	1	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13018364	13018417	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	intron	13018418	13018505	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	CDS	13018506	13018559	0.74	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	exon	13018506	13018559	.	+	.	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
Ledus.S4	AUGUSTUS	stop_codon	13018560	13018562	.	+	0	transcript_id "Ledus.S4G174400.t1"; gene_id "Ledus.S4G174400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10577.t1 is derived from g11607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16226223	16226438	.	-	.	Ledus.S3G205400
Ledus.S3	AUGUSTUS	transcript	16226223	16226438	.	-	.	transcript_id "Ledus.S3G205400.t1"; gene_id "Ledus.S3G205400"
Ledus.S3	AUGUSTUS	stop_codon	16226220	16226222	.	-	0	transcript_id "Ledus.S3G205400.t1"; gene_id "Ledus.S3G205400"
Ledus.S3	AUGUSTUS	CDS	16226223	16226438	0.9	-	0	transcript_id "Ledus.S3G205400.t1"; gene_id "Ledus.S3G205400"
Ledus.S3	AUGUSTUS	exon	16226223	16226438	.	-	.	transcript_id "Ledus.S3G205400.t1"; gene_id "Ledus.S3G205400"
Ledus.S3	AUGUSTUS	start_codon	16226436	16226438	.	-	0	transcript_id "Ledus.S3G205400.t1"; gene_id "Ledus.S3G205400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3933.t1 is derived from g1369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13634319	13635465	.	+	.	Ledus.S1G135400
Ledus.S1	AUGUSTUS	transcript	13634319	13635465	.	+	.	transcript_id "Ledus.S1G135400.t1"; gene_id "Ledus.S1G135400"
Ledus.S1	AUGUSTUS	start_codon	13634319	13634321	.	+	0	transcript_id "Ledus.S1G135400.t1"; gene_id "Ledus.S1G135400"
Ledus.S1	AUGUSTUS	CDS	13634319	13634977	0.97	+	0	transcript_id "Ledus.S1G135400.t1"; gene_id "Ledus.S1G135400"
Ledus.S1	AUGUSTUS	exon	13634319	13634977	.	+	.	transcript_id "Ledus.S1G135400.t1"; gene_id "Ledus.S1G135400"
Ledus.S1	AUGUSTUS	intron	13634978	13635290	.	+	.	transcript_id "Ledus.S1G135400.t1"; gene_id "Ledus.S1G135400"
Ledus.S1	AUGUSTUS	CDS	13635291	13635465	0.31	+	1	transcript_id "Ledus.S1G135400.t1"; gene_id "Ledus.S1G135400"
Ledus.S1	AUGUSTUS	exon	13635291	13635465	.	+	.	transcript_id "Ledus.S1G135400.t1"; gene_id "Ledus.S1G135400"
Ledus.S1	AUGUSTUS	stop_codon	13635466	13635468	.	+	0	transcript_id "Ledus.S1G135400.t1"; gene_id "Ledus.S1G135400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg86.t1 is derived from g9499.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	363551	365833	.	-	.	Ledus.C8G004600
Ledus.C8	AUGUSTUS	transcript	363551	365833	.	-	.	transcript_id "Ledus.C8G004600.t1"; gene_id "Ledus.C8G004600"
Ledus.C8	AUGUSTUS	stop_codon	363548	363550	.	-	0	transcript_id "Ledus.C8G004600.t1"; gene_id "Ledus.C8G004600"
Ledus.C8	AUGUSTUS	CDS	363551	365833	0.5	-	0	transcript_id "Ledus.C8G004600.t1"; gene_id "Ledus.C8G004600"
Ledus.C8	AUGUSTUS	exon	363551	365833	.	-	.	transcript_id "Ledus.C8G004600.t1"; gene_id "Ledus.C8G004600"
Ledus.C8	AUGUSTUS	start_codon	365831	365833	.	-	0	transcript_id "Ledus.C8G004600.t1"; gene_id "Ledus.C8G004600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7380.t1 is derived from g12051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1904190	1904426	.	-	.	Ledus.S5G015800
Ledus.S5	AUGUSTUS	transcript	1904190	1904426	.	-	.	transcript_id "Ledus.S5G015800.t1"; gene_id "Ledus.S5G015800"
Ledus.S5	AUGUSTUS	stop_codon	1904187	1904189	.	-	0	transcript_id "Ledus.S5G015800.t1"; gene_id "Ledus.S5G015800"
Ledus.S5	AUGUSTUS	CDS	1904190	1904426	0.97	-	0	transcript_id "Ledus.S5G015800.t1"; gene_id "Ledus.S5G015800"
Ledus.S5	AUGUSTUS	exon	1904190	1904426	.	-	.	transcript_id "Ledus.S5G015800.t1"; gene_id "Ledus.S5G015800"
Ledus.S5	AUGUSTUS	start_codon	1904424	1904426	.	-	0	transcript_id "Ledus.S5G015800.t1"; gene_id "Ledus.S5G015800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3094.t1 is derived from g529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5822427	5825904	.	-	.	Ledus.S1G051500
Ledus.S1	AUGUSTUS	transcript	5822427	5825904	.	-	.	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	stop_codon	5822424	5822426	.	-	0	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	CDS	5822427	5825300	0.79	-	0	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	exon	5822427	5825300	.	-	.	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	intron	5825301	5825379	.	-	.	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	CDS	5825380	5825426	1	-	2	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	exon	5825380	5825426	.	-	.	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	intron	5825427	5825513	.	-	.	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	CDS	5825514	5825652	1	-	0	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	exon	5825514	5825652	.	-	.	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	intron	5825653	5825727	.	-	.	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	CDS	5825728	5825904	0.87	-	0	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	exon	5825728	5825904	.	-	.	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
Ledus.S1	AUGUSTUS	start_codon	5825902	5825904	.	-	0	transcript_id "Ledus.S1G051500.t1"; gene_id "Ledus.S1G051500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg578.t1 is derived from g7439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3433976	3434489	.	+	.	Ledus.S2G046000
Ledus.S2	AUGUSTUS	transcript	3433976	3434489	.	+	.	transcript_id "Ledus.S2G046000.t1"; gene_id "Ledus.S2G046000"
Ledus.S2	AUGUSTUS	start_codon	3433976	3433978	.	+	0	transcript_id "Ledus.S2G046000.t1"; gene_id "Ledus.S2G046000"
Ledus.S2	AUGUSTUS	CDS	3433976	3434056	0.96	+	0	transcript_id "Ledus.S2G046000.t1"; gene_id "Ledus.S2G046000"
Ledus.S2	AUGUSTUS	exon	3433976	3434056	.	+	.	transcript_id "Ledus.S2G046000.t1"; gene_id "Ledus.S2G046000"
Ledus.S2	AUGUSTUS	intron	3434057	3434144	.	+	.	transcript_id "Ledus.S2G046000.t1"; gene_id "Ledus.S2G046000"
Ledus.S2	AUGUSTUS	CDS	3434145	3434230	1	+	0	transcript_id "Ledus.S2G046000.t1"; gene_id "Ledus.S2G046000"
Ledus.S2	AUGUSTUS	exon	3434145	3434230	.	+	.	transcript_id "Ledus.S2G046000.t1"; gene_id "Ledus.S2G046000"
Ledus.S2	AUGUSTUS	intron	3434231	3434389	.	+	.	transcript_id "Ledus.S2G046000.t1"; gene_id "Ledus.S2G046000"
Ledus.S2	AUGUSTUS	CDS	3434390	3434489	0.49	+	1	transcript_id "Ledus.S2G046000.t1"; gene_id "Ledus.S2G046000"
Ledus.S2	AUGUSTUS	exon	3434390	3434489	.	+	.	transcript_id "Ledus.S2G046000.t1"; gene_id "Ledus.S2G046000"
Ledus.S2	AUGUSTUS	stop_codon	3434490	3434492	.	+	0	transcript_id "Ledus.S2G046000.t1"; gene_id "Ledus.S2G046000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg654.t1 is derived from g7515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3906560	3913789	.	+	.	Ledus.S2G053600
Ledus.S2	AUGUSTUS	transcript	3906560	3913789	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	start_codon	3906560	3906562	.	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3906560	3906620	0.48	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3906560	3906620	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3906621	3907045	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3907046	3907869	0.67	+	2	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3907046	3907869	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3907870	3907964	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3907965	3908042	1	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3907965	3908042	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3908043	3908125	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3908126	3908237	1	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3908126	3908237	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3908238	3908351	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3908352	3908997	1	+	2	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3908352	3908997	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3908998	3909125	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3909126	3909324	1	+	1	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3909126	3909324	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3909325	3909495	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3909496	3909930	1	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3909496	3909930	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3909931	3910012	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3910013	3910267	0.88	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3910013	3910267	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3910268	3910371	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3910372	3910546	1	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3910372	3910546	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3910547	3910720	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3910721	3911001	0.77	+	2	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3910721	3911001	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3911002	3911219	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3911220	3911475	1	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3911220	3911475	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3911476	3911560	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3911561	3911772	1	+	2	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3911561	3911772	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3911773	3911867	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3911868	3912065	1	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3911868	3912065	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3912066	3912164	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3912165	3912314	1	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3912165	3912314	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3912315	3912423	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3912424	3912972	1	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3912424	3912972	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3912973	3913082	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3913083	3913256	1	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3913083	3913256	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	intron	3913257	3913384	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	CDS	3913385	3913789	1	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	exon	3913385	3913789	.	+	.	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
Ledus.S2	AUGUSTUS	stop_codon	3913790	3913792	.	+	0	transcript_id "Ledus.S2G053600.t1"; gene_id "Ledus.S2G053600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11018.t1 is derived from g4636.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1162695	1165435	.	+	.	Ledus.S4G017400
Ledus.S4	AUGUSTUS	transcript	1162695	1165435	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	start_codon	1162695	1162697	.	+	0	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	CDS	1162695	1162837	0.85	+	0	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	exon	1162695	1162837	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	intron	1162838	1163168	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	CDS	1163169	1163275	1	+	1	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	exon	1163169	1163275	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	intron	1163276	1163396	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	CDS	1163397	1163446	1	+	2	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	exon	1163397	1163446	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	intron	1163447	1163554	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	CDS	1163555	1163644	1	+	0	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	exon	1163555	1163644	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	intron	1163645	1163734	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	CDS	1163735	1163856	1	+	0	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	exon	1163735	1163856	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	intron	1163857	1163971	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	CDS	1163972	1164088	1	+	1	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	exon	1163972	1164088	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	intron	1164089	1164968	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	CDS	1164969	1165044	1	+	1	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	exon	1164969	1165044	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	intron	1165045	1165252	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	CDS	1165253	1165435	1	+	0	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	exon	1165253	1165435	.	+	.	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
Ledus.S4	AUGUSTUS	stop_codon	1165436	1165438	.	+	0	transcript_id "Ledus.S4G017400.t1"; gene_id "Ledus.S4G017400"
# This transcript jg2411.t2 is derived from g9274.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2412.t1 is derived from g9275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17982308	17983477	.	+	.	Ledus.S2G229400
Ledus.S2	AUGUSTUS	transcript	17982308	17983477	.	+	.	transcript_id "Ledus.S2G229400.t1"; gene_id "Ledus.S2G229400"
Ledus.S2	AUGUSTUS	start_codon	17982308	17982310	.	+	0	transcript_id "Ledus.S2G229400.t1"; gene_id "Ledus.S2G229400"
Ledus.S2	AUGUSTUS	CDS	17982308	17983477	1	+	0	transcript_id "Ledus.S2G229400.t1"; gene_id "Ledus.S2G229400"
Ledus.S2	AUGUSTUS	exon	17982308	17983477	.	+	.	transcript_id "Ledus.S2G229400.t1"; gene_id "Ledus.S2G229400"
Ledus.S2	AUGUSTUS	stop_codon	17983478	17983480	.	+	0	transcript_id "Ledus.S2G229400.t1"; gene_id "Ledus.S2G229400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12789.t1 is derived from g6411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14509675	14512199	.	+	.	Ledus.S4G194500
Ledus.S4	AUGUSTUS	transcript	14509675	14512199	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	start_codon	14509675	14509677	.	+	0	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	CDS	14509675	14509852	1	+	0	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	exon	14509675	14509852	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	intron	14509853	14510236	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	CDS	14510237	14510350	1	+	2	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	exon	14510237	14510350	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	intron	14510351	14510846	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	CDS	14510847	14510960	1	+	2	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	exon	14510847	14510960	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	intron	14510961	14511128	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	CDS	14511129	14511241	1	+	2	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	exon	14511129	14511241	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	intron	14511242	14511461	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	CDS	14511462	14511524	1	+	0	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	exon	14511462	14511524	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	intron	14511525	14511736	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	CDS	14511737	14511796	0.99	+	0	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	exon	14511737	14511796	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	intron	14511797	14511937	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	CDS	14511938	14511984	0.98	+	0	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	exon	14511938	14511984	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	intron	14511985	14512162	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	CDS	14512163	14512199	0.98	+	1	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	exon	14512163	14512199	.	+	.	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
Ledus.S4	AUGUSTUS	stop_codon	14512200	14512202	.	+	0	transcript_id "Ledus.S4G194500.t1"; gene_id "Ledus.S4G194500"
# This transcript jg6336.t2 is derived from g3779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6337.t1 is derived from g3780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30577086	30579230	.	+	.	Ledus.S1G375800
Ledus.S1	AUGUSTUS	transcript	30577086	30579230	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	start_codon	30577086	30577088	.	+	0	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	CDS	30577086	30577447	1	+	0	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	exon	30577086	30577447	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	intron	30577448	30577545	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	CDS	30577546	30577630	1	+	1	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	exon	30577546	30577630	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	intron	30577631	30577812	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	CDS	30577813	30577899	1	+	0	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	exon	30577813	30577899	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	intron	30577900	30577980	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	CDS	30577981	30578042	1	+	0	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	exon	30577981	30578042	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	intron	30578043	30578133	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	CDS	30578134	30578257	0.97	+	1	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	exon	30578134	30578257	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	intron	30578258	30578372	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	CDS	30578373	30578429	0.99	+	0	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	exon	30578373	30578429	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	intron	30578430	30578577	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	CDS	30578578	30578687	1	+	0	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	exon	30578578	30578687	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	intron	30578688	30578812	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	CDS	30578813	30579003	1	+	1	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	exon	30578813	30579003	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	intron	30579004	30579090	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	CDS	30579091	30579230	0.92	+	2	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	exon	30579091	30579230	.	+	.	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
Ledus.S1	AUGUSTUS	stop_codon	30579231	30579233	.	+	0	transcript_id "Ledus.S1G375800.t1"; gene_id "Ledus.S1G375800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7203.t1 is derived from g6734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2102254	2103273	.	+	.	Ledus.C7G026400
Ledus.C7	AUGUSTUS	transcript	2102273	2103273	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	start_codon	2102273	2102275	.	+	0	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102273	2102286	0.82	+	0	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102273	2102286	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102287	2102369	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102370	2102432	0.97	+	1	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102370	2102432	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102433	2102512	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102513	2102561	1	+	1	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102513	2102561	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102562	2102642	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102643	2102729	1	+	0	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102643	2102729	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102730	2102823	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102824	2102934	1	+	0	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102824	2102934	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102935	2103008	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2103009	2103097	1	+	0	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2103009	2103097	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2103098	2103176	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2103177	2103273	1	+	1	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2103177	2103273	.	+	.	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	stop_codon	2103274	2103276	.	+	0	transcript_id "Ledus.C7G026400.t1"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	transcript	2102254	2103273	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	start_codon	2102254	2102256	.	+	0	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102254	2102286	0.54	+	0	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102254	2102286	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102287	2102369	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102370	2102428	1	+	0	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102370	2102428	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102429	2102512	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102513	2102561	1	+	1	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102513	2102561	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102562	2102642	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102643	2102729	1	+	0	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102643	2102729	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102730	2102823	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102824	2102934	1	+	0	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102824	2102934	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102935	2103008	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2103009	2103097	1	+	0	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2103009	2103097	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2103098	2103176	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2103177	2103273	1	+	1	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2103177	2103273	.	+	.	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	stop_codon	2103274	2103276	.	+	0	transcript_id "Ledus.C7G026400.t2"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	transcript	2102254	2103273	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	start_codon	2102254	2102256	.	+	0	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102254	2102286	0.52	+	0	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102254	2102286	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102287	2102366	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102367	2102428	1	+	0	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102367	2102428	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102429	2102512	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102513	2102561	1	+	1	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102513	2102561	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102562	2102642	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102643	2102729	1	+	0	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102643	2102729	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102730	2102823	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2102824	2102934	1	+	0	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2102824	2102934	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2102935	2103008	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2103009	2103097	1	+	0	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2103009	2103097	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	intron	2103098	2103176	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	CDS	2103177	2103273	1	+	1	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	exon	2103177	2103273	.	+	.	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
Ledus.C7	AUGUSTUS	stop_codon	2103274	2103276	.	+	0	transcript_id "Ledus.C7G026400.t3"; gene_id "Ledus.C7G026400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8855.t1 is derived from g9885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2321926	2323362	.	-	.	Ledus.S3G033200
Ledus.S3	AUGUSTUS	transcript	2321926	2323362	.	-	.	transcript_id "Ledus.S3G033200.t1"; gene_id "Ledus.S3G033200"
Ledus.S3	AUGUSTUS	stop_codon	2321923	2321925	.	-	0	transcript_id "Ledus.S3G033200.t1"; gene_id "Ledus.S3G033200"
Ledus.S3	AUGUSTUS	CDS	2321926	2323121	1	-	2	transcript_id "Ledus.S3G033200.t1"; gene_id "Ledus.S3G033200"
Ledus.S3	AUGUSTUS	exon	2321926	2323121	.	-	.	transcript_id "Ledus.S3G033200.t1"; gene_id "Ledus.S3G033200"
Ledus.S3	AUGUSTUS	intron	2323122	2323217	.	-	.	transcript_id "Ledus.S3G033200.t1"; gene_id "Ledus.S3G033200"
Ledus.S3	AUGUSTUS	CDS	2323218	2323362	1	-	0	transcript_id "Ledus.S3G033200.t1"; gene_id "Ledus.S3G033200"
Ledus.S3	AUGUSTUS	exon	2323218	2323362	.	-	.	transcript_id "Ledus.S3G033200.t1"; gene_id "Ledus.S3G033200"
Ledus.S3	AUGUSTUS	start_codon	2323360	2323362	.	-	0	transcript_id "Ledus.S3G033200.t1"; gene_id "Ledus.S3G033200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg619.t1 is derived from g7480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3696066	3705099	.	+	.	Ledus.S2G050100
Ledus.S2	AUGUSTUS	transcript	3696066	3705099	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	start_codon	3696066	3696068	.	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3696066	3696742	0.93	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3696066	3696742	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3696743	3696818	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3696819	3696886	1	+	1	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3696819	3696886	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3696887	3697094	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3697095	3697138	0.77	+	2	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3697095	3697138	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3697139	3697267	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3697268	3697591	0.96	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3697268	3697591	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3697592	3697764	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3697765	3698004	0.97	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3697765	3698004	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3698005	3698361	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3698362	3698621	0.76	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3698362	3698621	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3698622	3698712	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3698713	3699547	0.82	+	1	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3698713	3699547	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3699548	3699649	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3699650	3699925	0.91	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3699650	3699925	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3699926	3700093	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3700094	3700210	1	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3700094	3700210	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3700211	3700295	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3700296	3700685	0.99	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3700296	3700685	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3700686	3701008	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3701009	3702020	0.96	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3701009	3702020	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3702021	3702125	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3702126	3702691	0.89	+	2	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3702126	3702691	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3702692	3702793	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3702794	3702916	1	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3702794	3702916	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3702917	3703064	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3703065	3703145	1	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3703065	3703145	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3703146	3703292	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3703293	3703346	1	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3703293	3703346	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3703347	3703747	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3703748	3703899	0.96	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3703748	3703899	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3703900	3704079	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3704080	3704104	0.99	+	1	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3704080	3704104	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3704105	3704194	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3704195	3704311	0.99	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3704195	3704311	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	intron	3704312	3705072	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	CDS	3705073	3705099	1	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	exon	3705073	3705099	.	+	.	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
Ledus.S2	AUGUSTUS	stop_codon	3705100	3705102	.	+	0	transcript_id "Ledus.S2G050100.t1"; gene_id "Ledus.S2G050100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7458.t1 is derived from g12129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2861166	2864525	.	+	.	Ledus.S5G023600
Ledus.S5	AUGUSTUS	transcript	2861166	2864525	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	start_codon	2861166	2861168	.	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2861166	2861225	1	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2861166	2861225	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2861226	2861308	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2861309	2861413	1	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2861309	2861413	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2861414	2861605	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2861606	2861680	1	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2861606	2861680	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2861681	2861773	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2861774	2861903	1	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2861774	2861903	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2861904	2862000	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2862001	2862092	1	+	2	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2862001	2862092	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2862093	2862199	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2862200	2862250	0.98	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2862200	2862250	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2862251	2862357	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2862358	2862437	0.95	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2862358	2862437	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2862438	2862526	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2862527	2862581	1	+	1	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2862527	2862581	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2862582	2862685	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2862686	2862787	1	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2862686	2862787	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2862788	2862874	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2862875	2862926	1	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2862875	2862926	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2862927	2863064	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2863065	2863110	1	+	2	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2863065	2863110	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2863111	2863199	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2863200	2863255	0.98	+	1	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2863200	2863255	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2863256	2863364	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2863365	2863416	0.93	+	2	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2863365	2863416	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2863417	2863548	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2863549	2863628	1	+	1	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2863549	2863628	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2863629	2863703	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2863704	2863774	1	+	2	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2863704	2863774	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2863775	2863859	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2863860	2863900	1	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2863860	2863900	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2863901	2864002	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2864003	2864102	1	+	1	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2864003	2864102	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2864103	2864187	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2864188	2864259	1	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2864188	2864259	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2864260	2864328	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2864329	2864406	1	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2864329	2864406	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	intron	2864407	2864492	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	CDS	2864493	2864525	1	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	exon	2864493	2864525	.	+	.	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
Ledus.S5	AUGUSTUS	stop_codon	2864526	2864528	.	+	0	transcript_id "Ledus.S5G023600.t1"; gene_id "Ledus.S5G023600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12347.t1 is derived from g5968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11341047	11342657	.	-	.	Ledus.S4G150300
Ledus.S4	AUGUSTUS	transcript	11341047	11342657	.	-	.	transcript_id "Ledus.S4G150300.t1"; gene_id "Ledus.S4G150300"
Ledus.S4	AUGUSTUS	stop_codon	11341044	11341046	.	-	0	transcript_id "Ledus.S4G150300.t1"; gene_id "Ledus.S4G150300"
Ledus.S4	AUGUSTUS	CDS	11341047	11342657	1	-	0	transcript_id "Ledus.S4G150300.t1"; gene_id "Ledus.S4G150300"
Ledus.S4	AUGUSTUS	exon	11341047	11342657	.	-	.	transcript_id "Ledus.S4G150300.t1"; gene_id "Ledus.S4G150300"
Ledus.S4	AUGUSTUS	start_codon	11342655	11342657	.	-	0	transcript_id "Ledus.S4G150300.t1"; gene_id "Ledus.S4G150300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg824.t1 is derived from g7685.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5324521	5324862	.	+	.	Ledus.S2G070600
Ledus.S2	AUGUSTUS	transcript	5324521	5324862	.	+	.	transcript_id "Ledus.S2G070600.t1"; gene_id "Ledus.S2G070600"
Ledus.S2	AUGUSTUS	start_codon	5324521	5324523	.	+	0	transcript_id "Ledus.S2G070600.t1"; gene_id "Ledus.S2G070600"
Ledus.S2	AUGUSTUS	CDS	5324521	5324862	0.99	+	0	transcript_id "Ledus.S2G070600.t1"; gene_id "Ledus.S2G070600"
Ledus.S2	AUGUSTUS	exon	5324521	5324862	.	+	.	transcript_id "Ledus.S2G070600.t1"; gene_id "Ledus.S2G070600"
Ledus.S2	AUGUSTUS	stop_codon	5324863	5324865	.	+	0	transcript_id "Ledus.S2G070600.t1"; gene_id "Ledus.S2G070600"
# This transcript jg1747.t2 is derived from g8609.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg1747.t3 is derived from g8609.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1748.t1 is derived from g8610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12310738	12312087	.	+	.	Ledus.S2G163000
Ledus.S2	AUGUSTUS	transcript	12310738	12312087	.	+	.	transcript_id "Ledus.S2G163000.t1"; gene_id "Ledus.S2G163000"
Ledus.S2	AUGUSTUS	start_codon	12310738	12310740	.	+	0	transcript_id "Ledus.S2G163000.t1"; gene_id "Ledus.S2G163000"
Ledus.S2	AUGUSTUS	CDS	12310738	12312087	0.81	+	0	transcript_id "Ledus.S2G163000.t1"; gene_id "Ledus.S2G163000"
Ledus.S2	AUGUSTUS	exon	12310738	12312087	.	+	.	transcript_id "Ledus.S2G163000.t1"; gene_id "Ledus.S2G163000"
Ledus.S2	AUGUSTUS	stop_codon	12312088	12312090	.	+	0	transcript_id "Ledus.S2G163000.t1"; gene_id "Ledus.S2G163000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8381.t1 is derived from g13053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11391958	11392182	.	-	.	Ledus.S5G115900
Ledus.S5	AUGUSTUS	transcript	11391958	11392182	.	-	.	transcript_id "Ledus.S5G115900.t1"; gene_id "Ledus.S5G115900"
Ledus.S5	AUGUSTUS	stop_codon	11391955	11391957	.	-	0	transcript_id "Ledus.S5G115900.t1"; gene_id "Ledus.S5G115900"
Ledus.S5	AUGUSTUS	CDS	11391958	11392182	0.33	-	0	transcript_id "Ledus.S5G115900.t1"; gene_id "Ledus.S5G115900"
Ledus.S5	AUGUSTUS	exon	11391958	11392182	.	-	.	transcript_id "Ledus.S5G115900.t1"; gene_id "Ledus.S5G115900"
Ledus.S5	AUGUSTUS	start_codon	11392180	11392182	.	-	0	transcript_id "Ledus.S5G115900.t1"; gene_id "Ledus.S5G115900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9736.t1 is derived from g10766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9495371	9498259	.	+	.	Ledus.S3G121300
Ledus.S3	AUGUSTUS	transcript	9495371	9498259	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	start_codon	9495371	9495373	.	+	0	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	CDS	9495371	9495487	0.85	+	0	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	exon	9495371	9495487	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	intron	9495488	9495749	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	CDS	9495750	9495870	1	+	0	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	exon	9495750	9495870	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	intron	9495871	9495973	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	CDS	9495974	9496023	0.96	+	2	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	exon	9495974	9496023	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	intron	9496024	9496200	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	CDS	9496201	9496276	0.48	+	0	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	exon	9496201	9496276	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	intron	9496277	9496392	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	CDS	9496393	9496458	0.89	+	2	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	exon	9496393	9496458	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	intron	9496459	9496596	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	CDS	9496597	9496658	1	+	2	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	exon	9496597	9496658	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	intron	9496659	9496854	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	CDS	9496855	9497506	0.9	+	0	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	exon	9496855	9497506	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	intron	9497507	9497709	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	CDS	9497710	9497910	1	+	2	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	exon	9497710	9497910	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	intron	9497911	9498089	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	CDS	9498090	9498259	1	+	2	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	exon	9498090	9498259	.	+	.	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
Ledus.S3	AUGUSTUS	stop_codon	9498260	9498262	.	+	0	transcript_id "Ledus.S3G121300.t1"; gene_id "Ledus.S3G121300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12658.t1 is derived from g6280.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13656452	13656768	.	-	.	Ledus.S4G181400
Ledus.S4	AUGUSTUS	transcript	13656452	13656768	.	-	.	transcript_id "Ledus.S4G181400.t1"; gene_id "Ledus.S4G181400"
Ledus.S4	AUGUSTUS	stop_codon	13656449	13656451	.	-	0	transcript_id "Ledus.S4G181400.t1"; gene_id "Ledus.S4G181400"
Ledus.S4	AUGUSTUS	CDS	13656452	13656615	0.17	-	2	transcript_id "Ledus.S4G181400.t1"; gene_id "Ledus.S4G181400"
Ledus.S4	AUGUSTUS	exon	13656452	13656615	.	-	.	transcript_id "Ledus.S4G181400.t1"; gene_id "Ledus.S4G181400"
Ledus.S4	AUGUSTUS	intron	13656616	13656710	.	-	.	transcript_id "Ledus.S4G181400.t1"; gene_id "Ledus.S4G181400"
Ledus.S4	AUGUSTUS	CDS	13656711	13656768	0.18	-	0	transcript_id "Ledus.S4G181400.t1"; gene_id "Ledus.S4G181400"
Ledus.S4	AUGUSTUS	exon	13656711	13656768	.	-	.	transcript_id "Ledus.S4G181400.t1"; gene_id "Ledus.S4G181400"
Ledus.S4	AUGUSTUS	start_codon	13656766	13656768	.	-	0	transcript_id "Ledus.S4G181400.t1"; gene_id "Ledus.S4G181400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11909.t1 is derived from g5528.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7706955	7708073	.	-	.	Ledus.S4G106500
Ledus.S4	AUGUSTUS	transcript	7706955	7708073	.	-	.	transcript_id "Ledus.S4G106500.t1"; gene_id "Ledus.S4G106500"
Ledus.S4	AUGUSTUS	stop_codon	7706952	7706954	.	-	0	transcript_id "Ledus.S4G106500.t1"; gene_id "Ledus.S4G106500"
Ledus.S4	AUGUSTUS	CDS	7706955	7708073	0.91	-	0	transcript_id "Ledus.S4G106500.t1"; gene_id "Ledus.S4G106500"
Ledus.S4	AUGUSTUS	exon	7706955	7708073	.	-	.	transcript_id "Ledus.S4G106500.t1"; gene_id "Ledus.S4G106500"
Ledus.S4	AUGUSTUS	start_codon	7708071	7708073	.	-	0	transcript_id "Ledus.S4G106500.t1"; gene_id "Ledus.S4G106500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7307.t1 is derived from g11978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	929491	929796	.	-	.	Ledus.S5G008500
Ledus.S5	AUGUSTUS	transcript	929491	929796	.	-	.	transcript_id "Ledus.S5G008500.t1"; gene_id "Ledus.S5G008500"
Ledus.S5	AUGUSTUS	stop_codon	929488	929490	.	-	0	transcript_id "Ledus.S5G008500.t1"; gene_id "Ledus.S5G008500"
Ledus.S5	AUGUSTUS	CDS	929491	929796	0.52	-	0	transcript_id "Ledus.S5G008500.t1"; gene_id "Ledus.S5G008500"
Ledus.S5	AUGUSTUS	exon	929491	929796	.	-	.	transcript_id "Ledus.S5G008500.t1"; gene_id "Ledus.S5G008500"
Ledus.S5	AUGUSTUS	start_codon	929794	929796	.	-	0	transcript_id "Ledus.S5G008500.t1"; gene_id "Ledus.S5G008500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5688.t1 is derived from g3127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25899367	25899717	.	-	.	Ledus.S1G310900
Ledus.S1	AUGUSTUS	transcript	25899367	25899717	.	-	.	transcript_id "Ledus.S1G310900.t1"; gene_id "Ledus.S1G310900"
Ledus.S1	AUGUSTUS	stop_codon	25899364	25899366	.	-	0	transcript_id "Ledus.S1G310900.t1"; gene_id "Ledus.S1G310900"
Ledus.S1	AUGUSTUS	CDS	25899367	25899717	0.91	-	0	transcript_id "Ledus.S1G310900.t1"; gene_id "Ledus.S1G310900"
Ledus.S1	AUGUSTUS	exon	25899367	25899717	.	-	.	transcript_id "Ledus.S1G310900.t1"; gene_id "Ledus.S1G310900"
Ledus.S1	AUGUSTUS	start_codon	25899715	25899717	.	-	0	transcript_id "Ledus.S1G310900.t1"; gene_id "Ledus.S1G310900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12898.t1 is derived from g4390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	152379	154343	.	+	.	Ledus.C9G000600
Ledus.C9	AUGUSTUS	transcript	152379	154343	.	+	.	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	start_codon	152379	152381	.	+	0	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	CDS	152379	152870	0.99	+	0	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	exon	152379	152870	.	+	.	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	intron	152871	153140	.	+	.	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	CDS	153141	153371	1	+	0	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	exon	153141	153371	.	+	.	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	intron	153372	153480	.	+	.	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	CDS	153481	153639	0.99	+	0	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	exon	153481	153639	.	+	.	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	intron	153640	153746	.	+	.	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	CDS	153747	153899	1	+	0	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	exon	153747	153899	.	+	.	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	intron	153900	154016	.	+	.	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	CDS	154017	154100	1	+	0	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	exon	154017	154100	.	+	.	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	intron	154101	154211	.	+	.	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	CDS	154212	154343	0.96	+	0	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	exon	154212	154343	.	+	.	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
Ledus.C9	AUGUSTUS	stop_codon	154344	154346	.	+	0	transcript_id "Ledus.C9G000600.t1"; gene_id "Ledus.C9G000600"
# This transcript jg3099.t2 is derived from g534.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3100.t1 is derived from g535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5839410	5846095	.	-	.	Ledus.S1G052100
Ledus.S1	AUGUSTUS	transcript	5839410	5846095	.	-	.	transcript_id "Ledus.S1G052100.t1"; gene_id "Ledus.S1G052100"
Ledus.S1	AUGUSTUS	stop_codon	5839407	5839409	.	-	0	transcript_id "Ledus.S1G052100.t1"; gene_id "Ledus.S1G052100"
Ledus.S1	AUGUSTUS	CDS	5839410	5846000	0.98	-	0	transcript_id "Ledus.S1G052100.t1"; gene_id "Ledus.S1G052100"
Ledus.S1	AUGUSTUS	exon	5839410	5846000	.	-	.	transcript_id "Ledus.S1G052100.t1"; gene_id "Ledus.S1G052100"
Ledus.S1	AUGUSTUS	intron	5846001	5846086	.	-	.	transcript_id "Ledus.S1G052100.t1"; gene_id "Ledus.S1G052100"
Ledus.S1	AUGUSTUS	CDS	5846087	5846095	1	-	0	transcript_id "Ledus.S1G052100.t1"; gene_id "Ledus.S1G052100"
Ledus.S1	AUGUSTUS	exon	5846087	5846095	.	-	.	transcript_id "Ledus.S1G052100.t1"; gene_id "Ledus.S1G052100"
Ledus.S1	AUGUSTUS	start_codon	5846093	5846095	.	-	0	transcript_id "Ledus.S1G052100.t1"; gene_id "Ledus.S1G052100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3809.t1 is derived from g1245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12515856	12516965	.	-	.	Ledus.S1G123000
Ledus.S1	AUGUSTUS	transcript	12515856	12516965	.	-	.	transcript_id "Ledus.S1G123000.t1"; gene_id "Ledus.S1G123000"
Ledus.S1	AUGUSTUS	stop_codon	12515853	12515855	.	-	0	transcript_id "Ledus.S1G123000.t1"; gene_id "Ledus.S1G123000"
Ledus.S1	AUGUSTUS	CDS	12515856	12515890	0.42	-	2	transcript_id "Ledus.S1G123000.t1"; gene_id "Ledus.S1G123000"
Ledus.S1	AUGUSTUS	exon	12515856	12515890	.	-	.	transcript_id "Ledus.S1G123000.t1"; gene_id "Ledus.S1G123000"
Ledus.S1	AUGUSTUS	intron	12515891	12516187	.	-	.	transcript_id "Ledus.S1G123000.t1"; gene_id "Ledus.S1G123000"
Ledus.S1	AUGUSTUS	CDS	12516188	12516965	0.36	-	0	transcript_id "Ledus.S1G123000.t1"; gene_id "Ledus.S1G123000"
Ledus.S1	AUGUSTUS	exon	12516188	12516965	.	-	.	transcript_id "Ledus.S1G123000.t1"; gene_id "Ledus.S1G123000"
Ledus.S1	AUGUSTUS	start_codon	12516963	12516965	.	-	0	transcript_id "Ledus.S1G123000.t1"; gene_id "Ledus.S1G123000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2562.t1 is derived from g9425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18977142	18985276	.	-	.	Ledus.S2G244400
Ledus.S2	AUGUSTUS	transcript	18977142	18985276	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	stop_codon	18977139	18977141	.	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18977142	18977252	0.92	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18977142	18977252	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18977253	18977364	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18977365	18977472	0.97	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18977365	18977472	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18977473	18977598	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18977599	18977700	1	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18977599	18977700	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18977701	18977777	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18977778	18977853	1	-	1	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18977778	18977853	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18977854	18977932	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18977933	18978036	0.97	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18977933	18978036	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18978037	18978144	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18978145	18978201	0.95	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18978145	18978201	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18978202	18978360	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18978361	18978465	1	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18978361	18978465	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18978466	18978561	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18978562	18978642	1	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18978562	18978642	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18978643	18978802	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18978803	18978959	0.87	-	1	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18978803	18978959	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18978960	18979060	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18979061	18979122	0.97	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18979061	18979122	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18979123	18979215	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18979216	18979278	1	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18979216	18979278	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18979279	18979355	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18979356	18979413	1	-	1	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18979356	18979413	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18979414	18979535	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18979536	18979604	1	-	1	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18979536	18979604	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18979605	18979770	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18979771	18980201	1	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18979771	18980201	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18980202	18980387	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18980388	18980474	1	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18980388	18980474	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18980475	18980576	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18980577	18980676	0.98	-	1	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18980577	18980676	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18980677	18980828	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18980829	18980876	1	-	1	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18980829	18980876	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18980877	18981208	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18981209	18981315	1	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18981209	18981315	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18981316	18981445	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18981446	18981592	1	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18981446	18981592	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18981593	18981765	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18981766	18981800	1	-	2	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18981766	18981800	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18981801	18981982	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18981983	18982023	1	-	1	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18981983	18982023	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18982024	18982236	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18982237	18982325	1	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18982237	18982325	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18982326	18982640	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18982641	18982733	1	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18982641	18982733	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18982734	18983022	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18983023	18983095	1	-	1	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18983023	18983095	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18983096	18983268	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18983269	18983398	1	-	2	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18983269	18983398	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18983399	18983494	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18983495	18983565	1	-	1	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18983495	18983565	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18983566	18983750	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18983751	18984025	1	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18983751	18984025	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18984026	18984262	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18984263	18984355	1	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18984263	18984355	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18984356	18984602	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18984603	18984828	1	-	1	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18984603	18984828	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18984829	18984909	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18984910	18984971	0.96	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18984910	18984971	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18984972	18985130	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18985131	18985178	0.74	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18985131	18985178	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	intron	18985179	18985261	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	CDS	18985262	18985276	0.93	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	exon	18985262	18985276	.	-	.	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
Ledus.S2	AUGUSTUS	start_codon	18985274	18985276	.	-	0	transcript_id "Ledus.S2G244400.t1"; gene_id "Ledus.S2G244400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9990.t1 is derived from g11020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11760531	11762276	.	+	.	Ledus.S3G146700
Ledus.S3	AUGUSTUS	transcript	11760531	11762276	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	start_codon	11760531	11760533	.	+	0	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	CDS	11760531	11760889	0.68	+	0	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	exon	11760531	11760889	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	intron	11760890	11760960	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	CDS	11760961	11761107	0.53	+	1	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	exon	11760961	11761107	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	intron	11761108	11761180	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	CDS	11761181	11761411	1	+	1	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	exon	11761181	11761411	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	intron	11761412	11761494	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	CDS	11761495	11761597	0.99	+	1	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	exon	11761495	11761597	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	intron	11761598	11761709	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	CDS	11761710	11761783	0.91	+	0	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	exon	11761710	11761783	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	intron	11761784	11761976	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	CDS	11761977	11762047	0.73	+	1	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	exon	11761977	11762047	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	intron	11762048	11762145	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	CDS	11762146	11762276	0.99	+	2	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	exon	11762146	11762276	.	+	.	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
Ledus.S3	AUGUSTUS	stop_codon	11762277	11762279	.	+	0	transcript_id "Ledus.S3G146700.t1"; gene_id "Ledus.S3G146700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4162.t1 is derived from g1598.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15055504	15056522	.	+	.	Ledus.S1G158300
Ledus.S1	AUGUSTUS	transcript	15055504	15056522	.	+	.	transcript_id "Ledus.S1G158300.t1"; gene_id "Ledus.S1G158300"
Ledus.S1	AUGUSTUS	start_codon	15055504	15055506	.	+	0	transcript_id "Ledus.S1G158300.t1"; gene_id "Ledus.S1G158300"
Ledus.S1	AUGUSTUS	CDS	15055504	15055779	0.52	+	0	transcript_id "Ledus.S1G158300.t1"; gene_id "Ledus.S1G158300"
Ledus.S1	AUGUSTUS	exon	15055504	15055779	.	+	.	transcript_id "Ledus.S1G158300.t1"; gene_id "Ledus.S1G158300"
Ledus.S1	AUGUSTUS	intron	15055780	15056348	.	+	.	transcript_id "Ledus.S1G158300.t1"; gene_id "Ledus.S1G158300"
Ledus.S1	AUGUSTUS	CDS	15056349	15056522	0.96	+	0	transcript_id "Ledus.S1G158300.t1"; gene_id "Ledus.S1G158300"
Ledus.S1	AUGUSTUS	exon	15056349	15056522	.	+	.	transcript_id "Ledus.S1G158300.t1"; gene_id "Ledus.S1G158300"
Ledus.S1	AUGUSTUS	stop_codon	15056523	15056525	.	+	0	transcript_id "Ledus.S1G158300.t1"; gene_id "Ledus.S1G158300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6081.t1 is derived from g3524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28841542	28842933	.	-	.	Ledus.S1G350200
Ledus.S1	AUGUSTUS	transcript	28841542	28842933	.	-	.	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	stop_codon	28841539	28841541	.	-	0	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	CDS	28841542	28841679	1	-	0	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	exon	28841542	28841679	.	-	.	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	intron	28841680	28841749	.	-	.	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	CDS	28841750	28841880	1	-	2	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	exon	28841750	28841880	.	-	.	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	intron	28841881	28841973	.	-	.	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	CDS	28841974	28842100	1	-	0	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	exon	28841974	28842100	.	-	.	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	intron	28842101	28842177	.	-	.	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	CDS	28842178	28842365	1	-	2	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	exon	28842178	28842365	.	-	.	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	intron	28842366	28842435	.	-	.	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	CDS	28842436	28842595	1	-	0	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	exon	28842436	28842595	.	-	.	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	intron	28842596	28842708	.	-	.	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	CDS	28842709	28842933	0.89	-	0	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	exon	28842709	28842933	.	-	.	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
Ledus.S1	AUGUSTUS	start_codon	28842931	28842933	.	-	0	transcript_id "Ledus.S1G350200.t1"; gene_id "Ledus.S1G350200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7459.t1 is derived from g12130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2864899	2865621	.	-	.	Ledus.S5G023700
Ledus.S5	AUGUSTUS	transcript	2864899	2865621	.	-	.	transcript_id "Ledus.S5G023700.t1"; gene_id "Ledus.S5G023700"
Ledus.S5	AUGUSTUS	stop_codon	2864896	2864898	.	-	0	transcript_id "Ledus.S5G023700.t1"; gene_id "Ledus.S5G023700"
Ledus.S5	AUGUSTUS	CDS	2864899	2864997	0.58	-	0	transcript_id "Ledus.S5G023700.t1"; gene_id "Ledus.S5G023700"
Ledus.S5	AUGUSTUS	exon	2864899	2864997	.	-	.	transcript_id "Ledus.S5G023700.t1"; gene_id "Ledus.S5G023700"
Ledus.S5	AUGUSTUS	intron	2864998	2865081	.	-	.	transcript_id "Ledus.S5G023700.t1"; gene_id "Ledus.S5G023700"
Ledus.S5	AUGUSTUS	CDS	2865082	2865212	1	-	2	transcript_id "Ledus.S5G023700.t1"; gene_id "Ledus.S5G023700"
Ledus.S5	AUGUSTUS	exon	2865082	2865212	.	-	.	transcript_id "Ledus.S5G023700.t1"; gene_id "Ledus.S5G023700"
Ledus.S5	AUGUSTUS	intron	2865213	2865329	.	-	.	transcript_id "Ledus.S5G023700.t1"; gene_id "Ledus.S5G023700"
Ledus.S5	AUGUSTUS	CDS	2865330	2865621	1	-	0	transcript_id "Ledus.S5G023700.t1"; gene_id "Ledus.S5G023700"
Ledus.S5	AUGUSTUS	exon	2865330	2865621	.	-	.	transcript_id "Ledus.S5G023700.t1"; gene_id "Ledus.S5G023700"
Ledus.S5	AUGUSTUS	start_codon	2865619	2865621	.	-	0	transcript_id "Ledus.S5G023700.t1"; gene_id "Ledus.S5G023700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13134.t1 is derived from g6944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6776931	6777263	.	+	.	Ledus.S6G019600
Ledus.S6	AUGUSTUS	transcript	6776931	6777263	.	+	.	transcript_id "Ledus.S6G019600.t1"; gene_id "Ledus.S6G019600"
Ledus.S6	AUGUSTUS	start_codon	6776931	6776933	.	+	0	transcript_id "Ledus.S6G019600.t1"; gene_id "Ledus.S6G019600"
Ledus.S6	AUGUSTUS	CDS	6776931	6777263	0.98	+	0	transcript_id "Ledus.S6G019600.t1"; gene_id "Ledus.S6G019600"
Ledus.S6	AUGUSTUS	exon	6776931	6777263	.	+	.	transcript_id "Ledus.S6G019600.t1"; gene_id "Ledus.S6G019600"
Ledus.S6	AUGUSTUS	stop_codon	6777264	6777266	.	+	0	transcript_id "Ledus.S6G019600.t1"; gene_id "Ledus.S6G019600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9320.t1 is derived from g10350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6068586	6070957	.	+	.	Ledus.S3G079700
Ledus.S3	AUGUSTUS	transcript	6068586	6070957	.	+	.	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	start_codon	6068586	6068588	.	+	0	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	CDS	6068586	6068662	0.53	+	0	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	exon	6068586	6068662	.	+	.	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	intron	6068663	6068755	.	+	.	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	CDS	6068756	6068815	0.99	+	1	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	exon	6068756	6068815	.	+	.	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	intron	6068816	6068908	.	+	.	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	CDS	6068909	6069560	0.73	+	1	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	exon	6068909	6069560	.	+	.	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	intron	6069561	6069695	.	+	.	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	CDS	6069696	6070129	0.99	+	0	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	exon	6069696	6070129	.	+	.	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	intron	6070130	6070235	.	+	.	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	CDS	6070236	6070334	1	+	1	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	exon	6070236	6070334	.	+	.	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	intron	6070335	6070416	.	+	.	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	CDS	6070417	6070957	1	+	1	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	exon	6070417	6070957	.	+	.	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
Ledus.S3	AUGUSTUS	stop_codon	6070958	6070960	.	+	0	transcript_id "Ledus.S3G079700.t1"; gene_id "Ledus.S3G079700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6703.t1 is derived from g4146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33417252	33420597	.	-	.	Ledus.S1G412400
Ledus.S1	AUGUSTUS	transcript	33417252	33420597	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	stop_codon	33417249	33417251	.	-	0	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33417252	33417368	1	-	0	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33417252	33417368	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	intron	33417369	33417451	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33417452	33417568	1	-	0	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33417452	33417568	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	intron	33417569	33417647	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33417648	33417765	1	-	1	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33417648	33417765	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	intron	33417766	33417848	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33417849	33417946	1	-	0	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33417849	33417946	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	intron	33417947	33418032	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33418033	33418282	0.99	-	1	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33418033	33418282	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	intron	33418283	33418397	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33418398	33418479	1	-	2	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33418398	33418479	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	intron	33418480	33418593	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33418594	33418706	1	-	1	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33418594	33418706	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	intron	33418707	33418835	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33418836	33419197	0.88	-	0	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33418836	33419197	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	intron	33419198	33419419	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33419420	33419590	1	-	0	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33419420	33419590	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	intron	33419591	33419815	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33419816	33419908	1	-	0	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33419816	33419908	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	intron	33419909	33419989	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33419990	33420072	0.94	-	2	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33419990	33420072	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	intron	33420073	33420179	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33420180	33420334	0.73	-	1	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33420180	33420334	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	intron	33420335	33420412	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	CDS	33420413	33420597	1	-	0	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	exon	33420413	33420597	.	-	.	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
Ledus.S1	AUGUSTUS	start_codon	33420595	33420597	.	-	0	transcript_id "Ledus.S1G412400.t1"; gene_id "Ledus.S1G412400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10596.t1 is derived from g11626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16288402	16289135	.	+	.	Ledus.S3G207300
Ledus.S3	AUGUSTUS	transcript	16288402	16289135	.	+	.	transcript_id "Ledus.S3G207300.t1"; gene_id "Ledus.S3G207300"
Ledus.S3	AUGUSTUS	start_codon	16288402	16288404	.	+	0	transcript_id "Ledus.S3G207300.t1"; gene_id "Ledus.S3G207300"
Ledus.S3	AUGUSTUS	CDS	16288402	16288713	0.92	+	0	transcript_id "Ledus.S3G207300.t1"; gene_id "Ledus.S3G207300"
Ledus.S3	AUGUSTUS	exon	16288402	16288713	.	+	.	transcript_id "Ledus.S3G207300.t1"; gene_id "Ledus.S3G207300"
Ledus.S3	AUGUSTUS	intron	16288714	16288853	.	+	.	transcript_id "Ledus.S3G207300.t1"; gene_id "Ledus.S3G207300"
Ledus.S3	AUGUSTUS	CDS	16288854	16289135	1	+	0	transcript_id "Ledus.S3G207300.t1"; gene_id "Ledus.S3G207300"
Ledus.S3	AUGUSTUS	exon	16288854	16289135	.	+	.	transcript_id "Ledus.S3G207300.t1"; gene_id "Ledus.S3G207300"
Ledus.S3	AUGUSTUS	stop_codon	16289136	16289138	.	+	0	transcript_id "Ledus.S3G207300.t1"; gene_id "Ledus.S3G207300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6331.t1 is derived from g3774.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30548216	30549352	.	+	.	Ledus.S1G375200
Ledus.S1	AUGUSTUS	transcript	30548216	30549352	.	+	.	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	start_codon	30548216	30548218	.	+	0	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	CDS	30548216	30548365	0.78	+	0	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	exon	30548216	30548365	.	+	.	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	intron	30548366	30548445	.	+	.	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	CDS	30548446	30548685	1	+	0	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	exon	30548446	30548685	.	+	.	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	intron	30548686	30548793	.	+	.	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	CDS	30548794	30549046	1	+	0	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	exon	30548794	30549046	.	+	.	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	intron	30549047	30549134	.	+	.	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	CDS	30549135	30549352	1	+	2	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	exon	30549135	30549352	.	+	.	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
Ledus.S1	AUGUSTUS	stop_codon	30549353	30549355	.	+	0	transcript_id "Ledus.S1G375200.t1"; gene_id "Ledus.S1G375200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6415.t1 is derived from g3858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31145022	31146332	.	-	.	Ledus.S1G383600
Ledus.S1	AUGUSTUS	transcript	31145022	31146332	.	-	.	transcript_id "Ledus.S1G383600.t1"; gene_id "Ledus.S1G383600"
Ledus.S1	AUGUSTUS	stop_codon	31145019	31145021	.	-	0	transcript_id "Ledus.S1G383600.t1"; gene_id "Ledus.S1G383600"
Ledus.S1	AUGUSTUS	CDS	31145022	31146332	0.76	-	0	transcript_id "Ledus.S1G383600.t1"; gene_id "Ledus.S1G383600"
Ledus.S1	AUGUSTUS	exon	31145022	31146332	.	-	.	transcript_id "Ledus.S1G383600.t1"; gene_id "Ledus.S1G383600"
Ledus.S1	AUGUSTUS	start_codon	31146330	31146332	.	-	0	transcript_id "Ledus.S1G383600.t1"; gene_id "Ledus.S1G383600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10495.t1 is derived from g11525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15612670	15620072	.	+	.	Ledus.S3G197200
Ledus.S3	AUGUSTUS	transcript	15612670	15620072	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	start_codon	15612670	15612672	.	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15612670	15612703	0.69	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15612670	15612703	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15612704	15612841	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15612842	15613076	0.98	+	2	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15612842	15613076	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15613077	15613222	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15613223	15613493	0.77	+	1	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15613223	15613493	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15613494	15613595	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15613596	15613694	0.77	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15613596	15613694	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15613695	15613791	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15613792	15613994	1	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15613792	15613994	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15613995	15614189	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15614190	15614437	0.61	+	1	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15614190	15614437	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15614438	15614593	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15614594	15614781	0.81	+	2	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15614594	15614781	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15614782	15614921	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15614922	15615107	0.69	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15614922	15615107	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15615108	15615233	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15615234	15615339	1	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15615234	15615339	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15615340	15615488	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15615489	15616207	1	+	2	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15615489	15616207	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15616208	15616355	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15616356	15616479	1	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15616356	15616479	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15616480	15616772	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15616773	15617266	0.9	+	2	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15616773	15617266	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15617267	15617471	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15617472	15617609	0.93	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15617472	15617609	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15617610	15617754	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15617755	15617937	0.8	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15617755	15617937	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15617938	15618055	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15618056	15618178	1	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15618056	15618178	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15618179	15618308	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15618309	15618430	0.93	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15618309	15618430	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15618431	15618551	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15618552	15618819	1	+	1	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15618552	15618819	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15618820	15619010	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15619011	15619295	0.99	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15619011	15619295	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15619296	15619458	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15619459	15619542	1	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15619459	15619542	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	intron	15619543	15619625	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	CDS	15619626	15620072	0.7	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	exon	15619626	15620072	.	+	.	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
Ledus.S3	AUGUSTUS	stop_codon	15620073	15620075	.	+	0	transcript_id "Ledus.S3G197200.t1"; gene_id "Ledus.S3G197200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3161.t1 is derived from g596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6455384	6457171	.	-	.	Ledus.S1G058200
Ledus.S1	AUGUSTUS	transcript	6455384	6457171	.	-	.	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	stop_codon	6455381	6455383	.	-	0	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	CDS	6455384	6455473	1	-	0	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	exon	6455384	6455473	.	-	.	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	intron	6455474	6455638	.	-	.	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	CDS	6455639	6455746	1	-	0	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	exon	6455639	6455746	.	-	.	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	intron	6455747	6455833	.	-	.	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	CDS	6455834	6456037	1	-	0	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	exon	6455834	6456037	.	-	.	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	intron	6456038	6456298	.	-	.	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	CDS	6456299	6456556	1	-	0	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	exon	6456299	6456556	.	-	.	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	intron	6456557	6456811	.	-	.	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	CDS	6456812	6457171	0.82	-	0	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	exon	6456812	6457171	.	-	.	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
Ledus.S1	AUGUSTUS	start_codon	6457169	6457171	.	-	0	transcript_id "Ledus.S1G058200.t1"; gene_id "Ledus.S1G058200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1025.t1 is derived from g7886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6825248	6825621	.	+	.	Ledus.S2G090700
Ledus.S2	AUGUSTUS	transcript	6825248	6825621	.	+	.	transcript_id "Ledus.S2G090700.t1"; gene_id "Ledus.S2G090700"
Ledus.S2	AUGUSTUS	start_codon	6825248	6825250	.	+	0	transcript_id "Ledus.S2G090700.t1"; gene_id "Ledus.S2G090700"
Ledus.S2	AUGUSTUS	CDS	6825248	6825524	0.72	+	0	transcript_id "Ledus.S2G090700.t1"; gene_id "Ledus.S2G090700"
Ledus.S2	AUGUSTUS	exon	6825248	6825524	.	+	.	transcript_id "Ledus.S2G090700.t1"; gene_id "Ledus.S2G090700"
Ledus.S2	AUGUSTUS	intron	6825525	6825613	.	+	.	transcript_id "Ledus.S2G090700.t1"; gene_id "Ledus.S2G090700"
Ledus.S2	AUGUSTUS	CDS	6825614	6825621	1	+	2	transcript_id "Ledus.S2G090700.t1"; gene_id "Ledus.S2G090700"
Ledus.S2	AUGUSTUS	exon	6825614	6825621	.	+	.	transcript_id "Ledus.S2G090700.t1"; gene_id "Ledus.S2G090700"
Ledus.S2	AUGUSTUS	stop_codon	6825622	6825624	.	+	0	transcript_id "Ledus.S2G090700.t1"; gene_id "Ledus.S2G090700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8717.t1 is derived from g9747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1567114	1567536	.	+	.	Ledus.S3G019400
Ledus.S3	AUGUSTUS	transcript	1567114	1567536	.	+	.	transcript_id "Ledus.S3G019400.t1"; gene_id "Ledus.S3G019400"
Ledus.S3	AUGUSTUS	start_codon	1567114	1567116	.	+	0	transcript_id "Ledus.S3G019400.t1"; gene_id "Ledus.S3G019400"
Ledus.S3	AUGUSTUS	CDS	1567114	1567536	0.88	+	0	transcript_id "Ledus.S3G019400.t1"; gene_id "Ledus.S3G019400"
Ledus.S3	AUGUSTUS	exon	1567114	1567536	.	+	.	transcript_id "Ledus.S3G019400.t1"; gene_id "Ledus.S3G019400"
Ledus.S3	AUGUSTUS	stop_codon	1567537	1567539	.	+	0	transcript_id "Ledus.S3G019400.t1"; gene_id "Ledus.S3G019400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7465.t1 is derived from g12136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2950423	2950949	.	-	.	Ledus.S5G024300
Ledus.S5	AUGUSTUS	transcript	2950423	2950949	.	-	.	transcript_id "Ledus.S5G024300.t1"; gene_id "Ledus.S5G024300"
Ledus.S5	AUGUSTUS	stop_codon	2950420	2950422	.	-	0	transcript_id "Ledus.S5G024300.t1"; gene_id "Ledus.S5G024300"
Ledus.S5	AUGUSTUS	CDS	2950423	2950823	0.5	-	2	transcript_id "Ledus.S5G024300.t1"; gene_id "Ledus.S5G024300"
Ledus.S5	AUGUSTUS	exon	2950423	2950823	.	-	.	transcript_id "Ledus.S5G024300.t1"; gene_id "Ledus.S5G024300"
Ledus.S5	AUGUSTUS	intron	2950824	2950891	.	-	.	transcript_id "Ledus.S5G024300.t1"; gene_id "Ledus.S5G024300"
Ledus.S5	AUGUSTUS	CDS	2950892	2950949	0.4	-	0	transcript_id "Ledus.S5G024300.t1"; gene_id "Ledus.S5G024300"
Ledus.S5	AUGUSTUS	exon	2950892	2950949	.	-	.	transcript_id "Ledus.S5G024300.t1"; gene_id "Ledus.S5G024300"
Ledus.S5	AUGUSTUS	start_codon	2950947	2950949	.	-	0	transcript_id "Ledus.S5G024300.t1"; gene_id "Ledus.S5G024300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10262.t1 is derived from g11292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13892517	13893733	.	-	.	Ledus.S3G173900
Ledus.S3	AUGUSTUS	transcript	13892517	13893733	.	-	.	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	stop_codon	13892514	13892516	.	-	0	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	CDS	13892517	13892604	0.46	-	1	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	exon	13892517	13892604	.	-	.	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	intron	13892605	13892696	.	-	.	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	CDS	13892697	13892743	0.58	-	0	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	exon	13892697	13892743	.	-	.	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	intron	13892744	13892852	.	-	.	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	CDS	13892853	13893452	0.75	-	0	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	exon	13892853	13893452	.	-	.	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	intron	13893453	13893568	.	-	.	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	CDS	13893569	13893733	0.78	-	0	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	exon	13893569	13893733	.	-	.	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
Ledus.S3	AUGUSTUS	start_codon	13893731	13893733	.	-	0	transcript_id "Ledus.S3G173900.t1"; gene_id "Ledus.S3G173900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1298.t1 is derived from g8159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9170596	9170847	.	-	.	Ledus.S2G118000
Ledus.S2	AUGUSTUS	transcript	9170596	9170847	.	-	.	transcript_id "Ledus.S2G118000.t1"; gene_id "Ledus.S2G118000"
Ledus.S2	AUGUSTUS	stop_codon	9170593	9170595	.	-	0	transcript_id "Ledus.S2G118000.t1"; gene_id "Ledus.S2G118000"
Ledus.S2	AUGUSTUS	CDS	9170596	9170847	0.77	-	0	transcript_id "Ledus.S2G118000.t1"; gene_id "Ledus.S2G118000"
Ledus.S2	AUGUSTUS	exon	9170596	9170847	.	-	.	transcript_id "Ledus.S2G118000.t1"; gene_id "Ledus.S2G118000"
Ledus.S2	AUGUSTUS	start_codon	9170845	9170847	.	-	0	transcript_id "Ledus.S2G118000.t1"; gene_id "Ledus.S2G118000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8251.t1 is derived from g12922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10161981	10163037	.	-	.	Ledus.S5G102900
Ledus.S5	AUGUSTUS	transcript	10161981	10163037	.	-	.	transcript_id "Ledus.S5G102900.t1"; gene_id "Ledus.S5G102900"
Ledus.S5	AUGUSTUS	stop_codon	10161978	10161980	.	-	0	transcript_id "Ledus.S5G102900.t1"; gene_id "Ledus.S5G102900"
Ledus.S5	AUGUSTUS	CDS	10161981	10162493	1	-	0	transcript_id "Ledus.S5G102900.t1"; gene_id "Ledus.S5G102900"
Ledus.S5	AUGUSTUS	exon	10161981	10162493	.	-	.	transcript_id "Ledus.S5G102900.t1"; gene_id "Ledus.S5G102900"
Ledus.S5	AUGUSTUS	intron	10162494	10162585	.	-	.	transcript_id "Ledus.S5G102900.t1"; gene_id "Ledus.S5G102900"
Ledus.S5	AUGUSTUS	CDS	10162586	10162798	1	-	0	transcript_id "Ledus.S5G102900.t1"; gene_id "Ledus.S5G102900"
Ledus.S5	AUGUSTUS	exon	10162586	10162798	.	-	.	transcript_id "Ledus.S5G102900.t1"; gene_id "Ledus.S5G102900"
Ledus.S5	AUGUSTUS	intron	10162799	10163013	.	-	.	transcript_id "Ledus.S5G102900.t1"; gene_id "Ledus.S5G102900"
Ledus.S5	AUGUSTUS	CDS	10163014	10163037	0.48	-	0	transcript_id "Ledus.S5G102900.t1"; gene_id "Ledus.S5G102900"
Ledus.S5	AUGUSTUS	exon	10163014	10163037	.	-	.	transcript_id "Ledus.S5G102900.t1"; gene_id "Ledus.S5G102900"
Ledus.S5	AUGUSTUS	start_codon	10163035	10163037	.	-	0	transcript_id "Ledus.S5G102900.t1"; gene_id "Ledus.S5G102900"
# This transcript jg8239.t2 is derived from g12910.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8240.t1 is derived from g12911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10089732	10090581	.	+	.	Ledus.S5G101800
Ledus.S5	AUGUSTUS	transcript	10089732	10090581	.	+	.	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	start_codon	10089732	10089734	.	+	0	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	CDS	10089732	10089779	0.85	+	0	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	exon	10089732	10089779	.	+	.	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	intron	10089780	10089881	.	+	.	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	CDS	10089882	10090010	0.97	+	0	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	exon	10089882	10090010	.	+	.	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	intron	10090011	10090093	.	+	.	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	CDS	10090094	10090164	1	+	0	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	exon	10090094	10090164	.	+	.	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	intron	10090165	10090295	.	+	.	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	CDS	10090296	10090581	1	+	1	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	exon	10090296	10090581	.	+	.	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
Ledus.S5	AUGUSTUS	stop_codon	10090582	10090584	.	+	0	transcript_id "Ledus.S5G101800.t1"; gene_id "Ledus.S5G101800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7554.t1 is derived from g12225.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4028612	4034280	.	+	.	Ledus.S5G033200
Ledus.S5	AUGUSTUS	transcript	4028612	4034280	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	start_codon	4028612	4028614	.	+	0	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4028612	4028755	0.61	+	0	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4028612	4028755	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4028756	4028842	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4028843	4029067	0.91	+	0	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4028843	4029067	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4029068	4029234	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4029235	4029249	0.69	+	0	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4029235	4029249	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4029250	4029335	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4029336	4029356	0.65	+	0	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4029336	4029356	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4029357	4029463	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4029464	4029603	0.55	+	0	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4029464	4029603	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4029604	4029772	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4029773	4029854	1	+	1	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4029773	4029854	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4029855	4029990	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4029991	4030095	1	+	0	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4029991	4030095	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4030096	4030191	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4030192	4030342	1	+	0	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4030192	4030342	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4030343	4030543	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4030544	4031033	0.94	+	2	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4030544	4031033	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4031034	4031233	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4031234	4031330	1	+	1	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4031234	4031330	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4031331	4031425	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4031426	4031600	1	+	0	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4031426	4031600	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4031601	4031863	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4031864	4031946	1	+	2	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4031864	4031946	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4031947	4032120	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4032121	4032486	0.99	+	0	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4032121	4032486	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4032487	4032569	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4032570	4032622	1	+	0	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4032570	4032622	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4032623	4032763	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4032764	4032811	1	+	1	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4032764	4032811	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4032812	4032913	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4032914	4033027	0.91	+	1	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4032914	4033027	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4033028	4033129	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4033130	4033194	0.96	+	1	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4033130	4033194	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4033195	4033391	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4033392	4034138	0.95	+	2	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4033392	4034138	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4034139	4034278	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4034279	4034280	1	+	2	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4034279	4034280	.	+	.	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	stop_codon	4034281	4034283	.	+	0	transcript_id "Ledus.S5G033200.t1"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	transcript	4028612	4034280	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	start_codon	4028612	4028614	.	+	0	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4028612	4028755	0.66	+	0	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4028612	4028755	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4028756	4028842	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4028843	4029067	0.87	+	0	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4028843	4029067	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4029068	4029234	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4029235	4029249	0.65	+	0	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4029235	4029249	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4029250	4029335	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4029336	4029356	0.53	+	0	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4029336	4029356	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4029357	4029463	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4029464	4029603	0.46	+	0	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4029464	4029603	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4029604	4029772	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4029773	4029854	1	+	1	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4029773	4029854	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4029855	4029990	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4029991	4030095	1	+	0	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4029991	4030095	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4030096	4030194	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4030195	4030342	1	+	0	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4030195	4030342	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4030343	4030543	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4030544	4031033	0.93	+	2	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4030544	4031033	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4031034	4031233	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4031234	4031330	1	+	1	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4031234	4031330	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4031331	4031425	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4031426	4031600	1	+	0	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4031426	4031600	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4031601	4031863	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4031864	4031946	1	+	2	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4031864	4031946	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4031947	4032120	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4032121	4032486	1	+	0	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4032121	4032486	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4032487	4032569	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4032570	4032622	1	+	0	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4032570	4032622	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4032623	4032763	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4032764	4032811	1	+	1	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4032764	4032811	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4032812	4032913	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4032914	4033027	0.94	+	1	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4032914	4033027	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4033028	4033129	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4033130	4033194	0.97	+	1	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4033130	4033194	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4033195	4033391	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4033392	4034138	0.97	+	2	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4033392	4034138	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	intron	4034139	4034278	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	CDS	4034279	4034280	1	+	2	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	exon	4034279	4034280	.	+	.	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
Ledus.S5	AUGUSTUS	stop_codon	4034281	4034283	.	+	0	transcript_id "Ledus.S5G033200.t2"; gene_id "Ledus.S5G033200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9396.t1 is derived from g10426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6525697	6528042	.	+	.	Ledus.S3G087300
Ledus.S3	AUGUSTUS	transcript	6525697	6528042	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	start_codon	6525697	6525699	.	+	0	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	CDS	6525697	6525711	0.93	+	0	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	exon	6525697	6525711	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	intron	6525712	6525836	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	CDS	6525837	6525862	1	+	0	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	exon	6525837	6525862	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	intron	6525863	6526050	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	CDS	6526051	6526319	1	+	1	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	exon	6526051	6526319	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	intron	6526320	6526603	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	CDS	6526604	6526710	1	+	2	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	exon	6526604	6526710	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	intron	6526711	6526835	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	CDS	6526836	6527081	0.99	+	0	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	exon	6526836	6527081	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	intron	6527082	6527173	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	CDS	6527174	6527254	1	+	0	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	exon	6527174	6527254	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	intron	6527255	6527383	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	CDS	6527384	6527617	0.98	+	0	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	exon	6527384	6527617	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	intron	6527618	6527697	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	CDS	6527698	6528042	0.83	+	0	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	exon	6527698	6528042	.	+	.	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
Ledus.S3	AUGUSTUS	stop_codon	6528043	6528045	.	+	0	transcript_id "Ledus.S3G087300.t1"; gene_id "Ledus.S3G087300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9392.t1 is derived from g10422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6516683	6517899	.	-	.	Ledus.S3G086900
Ledus.S3	AUGUSTUS	transcript	6516683	6517899	.	-	.	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	stop_codon	6516680	6516682	.	-	0	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	CDS	6516683	6516765	1	-	2	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	exon	6516683	6516765	.	-	.	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	intron	6516766	6516846	.	-	.	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	CDS	6516847	6516910	1	-	0	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	exon	6516847	6516910	.	-	.	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	intron	6516911	6516992	.	-	.	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	CDS	6516993	6517114	1	-	2	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	exon	6516993	6517114	.	-	.	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	intron	6517115	6517241	.	-	.	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	CDS	6517242	6517383	1	-	0	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	exon	6517242	6517383	.	-	.	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	intron	6517384	6517818	.	-	.	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	CDS	6517819	6517899	0.96	-	0	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	exon	6517819	6517899	.	-	.	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
Ledus.S3	AUGUSTUS	start_codon	6517897	6517899	.	-	0	transcript_id "Ledus.S3G086900.t1"; gene_id "Ledus.S3G086900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9629.t1 is derived from g10659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8460208	8460724	.	+	.	Ledus.S3G110600
Ledus.S3	AUGUSTUS	transcript	8460208	8460724	.	+	.	transcript_id "Ledus.S3G110600.t1"; gene_id "Ledus.S3G110600"
Ledus.S3	AUGUSTUS	start_codon	8460208	8460210	.	+	0	transcript_id "Ledus.S3G110600.t1"; gene_id "Ledus.S3G110600"
Ledus.S3	AUGUSTUS	CDS	8460208	8460234	0.79	+	0	transcript_id "Ledus.S3G110600.t1"; gene_id "Ledus.S3G110600"
Ledus.S3	AUGUSTUS	exon	8460208	8460234	.	+	.	transcript_id "Ledus.S3G110600.t1"; gene_id "Ledus.S3G110600"
Ledus.S3	AUGUSTUS	intron	8460235	8460354	.	+	.	transcript_id "Ledus.S3G110600.t1"; gene_id "Ledus.S3G110600"
Ledus.S3	AUGUSTUS	CDS	8460355	8460555	0.6	+	0	transcript_id "Ledus.S3G110600.t1"; gene_id "Ledus.S3G110600"
Ledus.S3	AUGUSTUS	exon	8460355	8460555	.	+	.	transcript_id "Ledus.S3G110600.t1"; gene_id "Ledus.S3G110600"
Ledus.S3	AUGUSTUS	intron	8460556	8460643	.	+	.	transcript_id "Ledus.S3G110600.t1"; gene_id "Ledus.S3G110600"
Ledus.S3	AUGUSTUS	CDS	8460644	8460724	0.89	+	0	transcript_id "Ledus.S3G110600.t1"; gene_id "Ledus.S3G110600"
Ledus.S3	AUGUSTUS	exon	8460644	8460724	.	+	.	transcript_id "Ledus.S3G110600.t1"; gene_id "Ledus.S3G110600"
Ledus.S3	AUGUSTUS	stop_codon	8460725	8460727	.	+	0	transcript_id "Ledus.S3G110600.t1"; gene_id "Ledus.S3G110600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6995.t1 is derived from g6526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	629548	632002	.	+	.	Ledus.C7G005600
Ledus.C7	AUGUSTUS	transcript	629548	632002	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	start_codon	629548	629550	.	+	0	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	CDS	629548	629592	0.39	+	0	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	exon	629548	629592	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	intron	629593	629726	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	CDS	629727	629749	0.83	+	0	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	exon	629727	629749	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	intron	629750	629851	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	CDS	629852	629919	0.69	+	1	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	exon	629852	629919	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	intron	629920	630022	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	CDS	630023	630074	0.66	+	2	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	exon	630023	630074	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	intron	630075	630185	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	CDS	630186	630273	0.71	+	1	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	exon	630186	630273	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	intron	630274	630360	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	CDS	630361	630428	1	+	0	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	exon	630361	630428	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	intron	630429	630897	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	CDS	630898	631045	1	+	1	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	exon	630898	631045	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	intron	631046	631144	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	CDS	631145	631225	1	+	0	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	exon	631145	631225	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	intron	631226	631338	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	CDS	631339	631425	1	+	0	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	exon	631339	631425	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	intron	631426	631523	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	CDS	631524	631609	1	+	0	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	exon	631524	631609	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	intron	631610	631704	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	CDS	631705	631825	0.72	+	1	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	exon	631705	631825	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	intron	631826	631930	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	CDS	631931	632002	0.72	+	0	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	exon	631931	632002	.	+	.	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
Ledus.C7	AUGUSTUS	stop_codon	632003	632005	.	+	0	transcript_id "Ledus.C7G005600.t1"; gene_id "Ledus.C7G005600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9606.t1 is derived from g10636.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8343727	8344023	.	-	.	Ledus.S3G108300
Ledus.S3	AUGUSTUS	transcript	8343727	8344023	.	-	.	transcript_id "Ledus.S3G108300.t1"; gene_id "Ledus.S3G108300"
Ledus.S3	AUGUSTUS	stop_codon	8343724	8343726	.	-	0	transcript_id "Ledus.S3G108300.t1"; gene_id "Ledus.S3G108300"
Ledus.S3	AUGUSTUS	CDS	8343727	8344023	0.78	-	0	transcript_id "Ledus.S3G108300.t1"; gene_id "Ledus.S3G108300"
Ledus.S3	AUGUSTUS	exon	8343727	8344023	.	-	.	transcript_id "Ledus.S3G108300.t1"; gene_id "Ledus.S3G108300"
Ledus.S3	AUGUSTUS	start_codon	8344021	8344023	.	-	0	transcript_id "Ledus.S3G108300.t1"; gene_id "Ledus.S3G108300"
# This transcript jg4220.t2 is derived from g1656.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4221.t1 is derived from g1657.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15630078	15632004	.	-	.	Ledus.S1G164200
Ledus.S1	AUGUSTUS	transcript	15630078	15632004	.	-	.	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	stop_codon	15630075	15630077	.	-	0	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	CDS	15630078	15630339	0.87	-	1	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	exon	15630078	15630339	.	-	.	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	intron	15630340	15630462	.	-	.	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	CDS	15630463	15630659	1	-	0	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	exon	15630463	15630659	.	-	.	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	intron	15630660	15630776	.	-	.	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	CDS	15630777	15630882	1	-	1	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	exon	15630777	15630882	.	-	.	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	intron	15630883	15630997	.	-	.	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	CDS	15630998	15632004	0.93	-	0	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	exon	15630998	15632004	.	-	.	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
Ledus.S1	AUGUSTUS	start_codon	15632002	15632004	.	-	0	transcript_id "Ledus.S1G164200.t1"; gene_id "Ledus.S1G164200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2756.t1 is derived from g190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3190885	3191091	.	+	.	Ledus.S1G017700
Ledus.S1	AUGUSTUS	transcript	3190885	3191091	.	+	.	transcript_id "Ledus.S1G017700.t1"; gene_id "Ledus.S1G017700"
Ledus.S1	AUGUSTUS	start_codon	3190885	3190887	.	+	0	transcript_id "Ledus.S1G017700.t1"; gene_id "Ledus.S1G017700"
Ledus.S1	AUGUSTUS	CDS	3190885	3191091	0.83	+	0	transcript_id "Ledus.S1G017700.t1"; gene_id "Ledus.S1G017700"
Ledus.S1	AUGUSTUS	exon	3190885	3191091	.	+	.	transcript_id "Ledus.S1G017700.t1"; gene_id "Ledus.S1G017700"
Ledus.S1	AUGUSTUS	stop_codon	3191092	3191094	.	+	0	transcript_id "Ledus.S1G017700.t1"; gene_id "Ledus.S1G017700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2491.t1 is derived from g9354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18451052	18451994	.	-	.	Ledus.S2G237300
Ledus.S2	AUGUSTUS	transcript	18451052	18451994	.	-	.	transcript_id "Ledus.S2G237300.t1"; gene_id "Ledus.S2G237300"
Ledus.S2	AUGUSTUS	stop_codon	18451049	18451051	.	-	0	transcript_id "Ledus.S2G237300.t1"; gene_id "Ledus.S2G237300"
Ledus.S2	AUGUSTUS	CDS	18451052	18451306	1	-	0	transcript_id "Ledus.S2G237300.t1"; gene_id "Ledus.S2G237300"
Ledus.S2	AUGUSTUS	exon	18451052	18451306	.	-	.	transcript_id "Ledus.S2G237300.t1"; gene_id "Ledus.S2G237300"
Ledus.S2	AUGUSTUS	intron	18451307	18451475	.	-	.	transcript_id "Ledus.S2G237300.t1"; gene_id "Ledus.S2G237300"
Ledus.S2	AUGUSTUS	CDS	18451476	18451654	1	-	2	transcript_id "Ledus.S2G237300.t1"; gene_id "Ledus.S2G237300"
Ledus.S2	AUGUSTUS	exon	18451476	18451654	.	-	.	transcript_id "Ledus.S2G237300.t1"; gene_id "Ledus.S2G237300"
Ledus.S2	AUGUSTUS	intron	18451655	18451828	.	-	.	transcript_id "Ledus.S2G237300.t1"; gene_id "Ledus.S2G237300"
Ledus.S2	AUGUSTUS	CDS	18451829	18451994	1	-	0	transcript_id "Ledus.S2G237300.t1"; gene_id "Ledus.S2G237300"
Ledus.S2	AUGUSTUS	exon	18451829	18451994	.	-	.	transcript_id "Ledus.S2G237300.t1"; gene_id "Ledus.S2G237300"
Ledus.S2	AUGUSTUS	start_codon	18451992	18451994	.	-	0	transcript_id "Ledus.S2G237300.t1"; gene_id "Ledus.S2G237300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6564.t1 is derived from g4007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32421240	32422251	.	+	.	Ledus.S1G398500
Ledus.S1	AUGUSTUS	transcript	32421240	32422251	.	+	.	transcript_id "Ledus.S1G398500.t1"; gene_id "Ledus.S1G398500"
Ledus.S1	AUGUSTUS	start_codon	32421240	32421242	.	+	0	transcript_id "Ledus.S1G398500.t1"; gene_id "Ledus.S1G398500"
Ledus.S1	AUGUSTUS	CDS	32421240	32422110	1	+	0	transcript_id "Ledus.S1G398500.t1"; gene_id "Ledus.S1G398500"
Ledus.S1	AUGUSTUS	exon	32421240	32422110	.	+	.	transcript_id "Ledus.S1G398500.t1"; gene_id "Ledus.S1G398500"
Ledus.S1	AUGUSTUS	intron	32422111	32422204	.	+	.	transcript_id "Ledus.S1G398500.t1"; gene_id "Ledus.S1G398500"
Ledus.S1	AUGUSTUS	CDS	32422205	32422251	0.95	+	2	transcript_id "Ledus.S1G398500.t1"; gene_id "Ledus.S1G398500"
Ledus.S1	AUGUSTUS	exon	32422205	32422251	.	+	.	transcript_id "Ledus.S1G398500.t1"; gene_id "Ledus.S1G398500"
Ledus.S1	AUGUSTUS	stop_codon	32422252	32422254	.	+	0	transcript_id "Ledus.S1G398500.t1"; gene_id "Ledus.S1G398500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3004.t1 is derived from g439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5230011	5232568	.	-	.	Ledus.S1G042500
Ledus.S1	AUGUSTUS	transcript	5230011	5232568	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	stop_codon	5230008	5230010	.	-	0	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	CDS	5230011	5230160	1	-	0	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	exon	5230011	5230160	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	intron	5230161	5230230	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	CDS	5230231	5230416	1	-	0	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	exon	5230231	5230416	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	intron	5230417	5230488	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	CDS	5230489	5230731	1	-	0	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	exon	5230489	5230731	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	intron	5230732	5231502	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	CDS	5231503	5231658	1	-	0	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	exon	5231503	5231658	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	intron	5231659	5231735	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	CDS	5231736	5231803	1	-	2	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	exon	5231736	5231803	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	intron	5231804	5231883	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	CDS	5231884	5232136	1	-	0	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	exon	5231884	5232136	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	intron	5232137	5232415	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	CDS	5232416	5232568	0.3	-	0	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	exon	5232416	5232568	.	-	.	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
Ledus.S1	AUGUSTUS	start_codon	5232566	5232568	.	-	0	transcript_id "Ledus.S1G042500.t1"; gene_id "Ledus.S1G042500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6458.t1 is derived from g3901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31359248	31362667	.	-	.	Ledus.S1G387900
Ledus.S1	AUGUSTUS	transcript	31359248	31362667	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	stop_codon	31359245	31359247	.	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31359248	31359364	0.98	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31359248	31359364	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	intron	31359365	31359466	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31359467	31359733	0.96	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31359467	31359733	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	intron	31359734	31359848	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31359849	31360040	0.95	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31359849	31360040	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	intron	31360041	31360235	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31360236	31360381	1	-	2	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31360236	31360381	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	intron	31360382	31360468	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31360469	31360610	1	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31360469	31360610	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	intron	31360611	31360708	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31360709	31360993	1	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31360709	31360993	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	intron	31360994	31361181	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31361182	31361277	0.95	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31361182	31361277	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	intron	31361278	31361381	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31361382	31361522	1	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31361382	31361522	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	intron	31361523	31361618	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31361619	31361681	1	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31361619	31361681	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	intron	31361682	31361802	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31361803	31361874	1	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31361803	31361874	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	intron	31361875	31362039	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31362040	31362139	1	-	1	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31362040	31362139	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	intron	31362140	31362220	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31362221	31362312	1	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31362221	31362312	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	intron	31362313	31362451	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	CDS	31362452	31362667	0.69	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	exon	31362452	31362667	.	-	.	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
Ledus.S1	AUGUSTUS	start_codon	31362665	31362667	.	-	0	transcript_id "Ledus.S1G387900.t1"; gene_id "Ledus.S1G387900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg256.t1 is derived from g7117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1188434	1188803	.	-	.	Ledus.S2G013800
Ledus.S2	AUGUSTUS	transcript	1188434	1188803	.	-	.	transcript_id "Ledus.S2G013800.t1"; gene_id "Ledus.S2G013800"
Ledus.S2	AUGUSTUS	stop_codon	1188431	1188433	.	-	0	transcript_id "Ledus.S2G013800.t1"; gene_id "Ledus.S2G013800"
Ledus.S2	AUGUSTUS	CDS	1188434	1188589	0.62	-	0	transcript_id "Ledus.S2G013800.t1"; gene_id "Ledus.S2G013800"
Ledus.S2	AUGUSTUS	exon	1188434	1188589	.	-	.	transcript_id "Ledus.S2G013800.t1"; gene_id "Ledus.S2G013800"
Ledus.S2	AUGUSTUS	intron	1188590	1188752	.	-	.	transcript_id "Ledus.S2G013800.t1"; gene_id "Ledus.S2G013800"
Ledus.S2	AUGUSTUS	CDS	1188753	1188803	0.92	-	0	transcript_id "Ledus.S2G013800.t1"; gene_id "Ledus.S2G013800"
Ledus.S2	AUGUSTUS	exon	1188753	1188803	.	-	.	transcript_id "Ledus.S2G013800.t1"; gene_id "Ledus.S2G013800"
Ledus.S2	AUGUSTUS	start_codon	1188801	1188803	.	-	0	transcript_id "Ledus.S2G013800.t1"; gene_id "Ledus.S2G013800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2834.t1 is derived from g268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4017036	4018798	.	+	.	Ledus.S1G025500
Ledus.S1	AUGUSTUS	transcript	4017036	4018798	.	+	.	transcript_id "Ledus.S1G025500.t1"; gene_id "Ledus.S1G025500"
Ledus.S1	AUGUSTUS	start_codon	4017036	4017038	.	+	0	transcript_id "Ledus.S1G025500.t1"; gene_id "Ledus.S1G025500"
Ledus.S1	AUGUSTUS	CDS	4017036	4017617	0.97	+	0	transcript_id "Ledus.S1G025500.t1"; gene_id "Ledus.S1G025500"
Ledus.S1	AUGUSTUS	exon	4017036	4017617	.	+	.	transcript_id "Ledus.S1G025500.t1"; gene_id "Ledus.S1G025500"
Ledus.S1	AUGUSTUS	intron	4017618	4017901	.	+	.	transcript_id "Ledus.S1G025500.t1"; gene_id "Ledus.S1G025500"
Ledus.S1	AUGUSTUS	CDS	4017902	4018798	1	+	0	transcript_id "Ledus.S1G025500.t1"; gene_id "Ledus.S1G025500"
Ledus.S1	AUGUSTUS	exon	4017902	4018798	.	+	.	transcript_id "Ledus.S1G025500.t1"; gene_id "Ledus.S1G025500"
Ledus.S1	AUGUSTUS	stop_codon	4018799	4018801	.	+	0	transcript_id "Ledus.S1G025500.t1"; gene_id "Ledus.S1G025500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9418.t1 is derived from g10448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6621179	6622862	.	+	.	Ledus.S3G089500
Ledus.S3	AUGUSTUS	transcript	6621179	6622862	.	+	.	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	start_codon	6621179	6621181	.	+	0	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	CDS	6621179	6621403	0.47	+	0	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	exon	6621179	6621403	.	+	.	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	intron	6621404	6621534	.	+	.	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	CDS	6621535	6621792	1	+	0	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	exon	6621535	6621792	.	+	.	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	intron	6621793	6621906	.	+	.	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	CDS	6621907	6621975	1	+	0	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	exon	6621907	6621975	.	+	.	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	intron	6621976	6622053	.	+	.	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	CDS	6622054	6622222	1	+	0	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	exon	6622054	6622222	.	+	.	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	intron	6622223	6622401	.	+	.	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	CDS	6622402	6622862	0.69	+	2	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	exon	6622402	6622862	.	+	.	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	stop_codon	6622863	6622865	.	+	0	transcript_id "Ledus.S3G089500.t1"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	transcript	6621179	6621605	.	+	.	transcript_id "Ledus.S3G089500.t2"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	start_codon	6621179	6621181	.	+	0	transcript_id "Ledus.S3G089500.t2"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	CDS	6621179	6621434	0.32	+	0	transcript_id "Ledus.S3G089500.t2"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	exon	6621179	6621434	.	+	.	transcript_id "Ledus.S3G089500.t2"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	intron	6621435	6621534	.	+	.	transcript_id "Ledus.S3G089500.t2"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	CDS	6621535	6621605	0.64	+	2	transcript_id "Ledus.S3G089500.t2"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	exon	6621535	6621605	.	+	.	transcript_id "Ledus.S3G089500.t2"; gene_id "Ledus.S3G089500"
Ledus.S3	AUGUSTUS	stop_codon	6621606	6621608	.	+	0	transcript_id "Ledus.S3G089500.t2"; gene_id "Ledus.S3G089500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10029.t1 is derived from g11059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12080379	12083957	.	-	.	Ledus.S3G150600
Ledus.S3	AUGUSTUS	transcript	12080379	12083957	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	stop_codon	12080376	12080378	.	-	0	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	CDS	12080379	12080924	0.96	-	0	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	exon	12080379	12080924	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	intron	12080925	12081067	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	CDS	12081068	12081244	1	-	0	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	exon	12081068	12081244	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	intron	12081245	12081400	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	CDS	12081401	12081685	1	-	0	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	exon	12081401	12081685	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	intron	12081686	12081822	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	CDS	12081823	12082107	1	-	0	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	exon	12081823	12082107	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	intron	12082108	12082277	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	CDS	12082278	12082424	1	-	0	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	exon	12082278	12082424	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	intron	12082425	12082573	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	CDS	12082574	12082697	1	-	1	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	exon	12082574	12082697	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	intron	12082698	12082881	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	CDS	12082882	12082949	1	-	0	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	exon	12082882	12082949	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	intron	12082950	12083040	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	CDS	12083041	12083148	1	-	0	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	exon	12083041	12083148	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	intron	12083149	12083230	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	CDS	12083231	12083378	1	-	1	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	exon	12083231	12083378	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	intron	12083379	12083474	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	CDS	12083475	12083527	1	-	0	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	exon	12083475	12083527	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	intron	12083528	12083747	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	CDS	12083748	12083957	1	-	0	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	exon	12083748	12083957	.	-	.	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
Ledus.S3	AUGUSTUS	start_codon	12083955	12083957	.	-	0	transcript_id "Ledus.S3G150600.t1"; gene_id "Ledus.S3G150600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9611.t1 is derived from g10641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8390077	8391877	.	+	.	Ledus.S3G108800
Ledus.S3	AUGUSTUS	transcript	8390077	8391877	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	start_codon	8390077	8390079	.	+	0	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	CDS	8390077	8390394	0.98	+	0	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	exon	8390077	8390394	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	intron	8390395	8390518	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	CDS	8390519	8390589	1	+	0	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	exon	8390519	8390589	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	intron	8390590	8390770	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	CDS	8390771	8390929	1	+	1	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	exon	8390771	8390929	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	intron	8390930	8391117	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	CDS	8391118	8391184	1	+	1	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	exon	8391118	8391184	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	intron	8391185	8391268	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	CDS	8391269	8391364	1	+	0	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	exon	8391269	8391364	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	intron	8391365	8391450	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	CDS	8391451	8391497	1	+	0	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	exon	8391451	8391497	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	intron	8391498	8391595	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	CDS	8391596	8391676	1	+	1	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	exon	8391596	8391676	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	intron	8391677	8391753	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	CDS	8391754	8391877	1	+	1	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	exon	8391754	8391877	.	+	.	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
Ledus.S3	AUGUSTUS	stop_codon	8391878	8391880	.	+	0	transcript_id "Ledus.S3G108800.t1"; gene_id "Ledus.S3G108800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12698.t1 is derived from g6320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13960139	13961581	.	-	.	Ledus.S4G185400
Ledus.S4	AUGUSTUS	transcript	13960139	13961581	.	-	.	transcript_id "Ledus.S4G185400.t1"; gene_id "Ledus.S4G185400"
Ledus.S4	AUGUSTUS	stop_codon	13960136	13960138	.	-	0	transcript_id "Ledus.S4G185400.t1"; gene_id "Ledus.S4G185400"
Ledus.S4	AUGUSTUS	CDS	13960139	13961581	0.89	-	0	transcript_id "Ledus.S4G185400.t1"; gene_id "Ledus.S4G185400"
Ledus.S4	AUGUSTUS	exon	13960139	13961581	.	-	.	transcript_id "Ledus.S4G185400.t1"; gene_id "Ledus.S4G185400"
Ledus.S4	AUGUSTUS	start_codon	13961579	13961581	.	-	0	transcript_id "Ledus.S4G185400.t1"; gene_id "Ledus.S4G185400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2128.t1 is derived from g8991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14928601	14929917	.	-	.	Ledus.S2G201000
Ledus.S2	AUGUSTUS	transcript	14928601	14929917	.	-	.	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	stop_codon	14928598	14928600	.	-	0	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	CDS	14928601	14928678	0.91	-	0	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	exon	14928601	14928678	.	-	.	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	intron	14928679	14928780	.	-	.	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	CDS	14928781	14928849	1	-	0	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	exon	14928781	14928849	.	-	.	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	intron	14928850	14928931	.	-	.	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	CDS	14928932	14929243	1	-	0	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	exon	14928932	14929243	.	-	.	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	intron	14929244	14929343	.	-	.	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	CDS	14929344	14929464	1	-	1	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	exon	14929344	14929464	.	-	.	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	intron	14929465	14929544	.	-	.	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	CDS	14929545	14929625	0.99	-	1	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	exon	14929545	14929625	.	-	.	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	intron	14929626	14929726	.	-	.	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	CDS	14929727	14929917	0.99	-	0	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	exon	14929727	14929917	.	-	.	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
Ledus.S2	AUGUSTUS	start_codon	14929915	14929917	.	-	0	transcript_id "Ledus.S2G201000.t1"; gene_id "Ledus.S2G201000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg992.t1 is derived from g7853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6530674	6533574	.	-	.	Ledus.S2G087400
Ledus.S2	AUGUSTUS	transcript	6530674	6533574	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	stop_codon	6530671	6530673	.	-	0	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6530674	6531027	0.93	-	0	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6530674	6531027	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6531028	6531112	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6531113	6531173	0.99	-	1	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6531113	6531173	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6531174	6531281	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6531282	6531349	1	-	0	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6531282	6531349	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6531350	6531491	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6531492	6531527	1	-	0	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6531492	6531527	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6531528	6531604	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6531605	6531784	1	-	0	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6531605	6531784	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6531785	6531885	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6531886	6531926	1	-	2	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6531886	6531926	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6531927	6532011	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6532012	6532061	1	-	1	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6532012	6532061	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6532062	6532160	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6532161	6532246	1	-	0	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6532161	6532246	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6532247	6532348	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6532349	6532423	1	-	0	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6532349	6532423	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6532424	6532501	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6532502	6532569	1	-	2	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6532502	6532569	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6532570	6532656	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6532657	6532708	1	-	0	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6532657	6532708	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6532709	6532783	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6532784	6532900	1	-	0	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6532784	6532900	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6532901	6532972	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6532973	6533235	1	-	2	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6532973	6533235	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6533236	6533317	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6533318	6533375	1	-	0	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6533318	6533375	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	intron	6533376	6533460	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	CDS	6533461	6533574	0.94	-	0	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	exon	6533461	6533574	.	-	.	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
Ledus.S2	AUGUSTUS	start_codon	6533572	6533574	.	-	0	transcript_id "Ledus.S2G087400.t1"; gene_id "Ledus.S2G087400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4287.t1 is derived from g1723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16070412	16071863	.	+	.	Ledus.S1G170800
Ledus.S1	AUGUSTUS	transcript	16070412	16071863	.	+	.	transcript_id "Ledus.S1G170800.t1"; gene_id "Ledus.S1G170800"
Ledus.S1	AUGUSTUS	start_codon	16070412	16070414	.	+	0	transcript_id "Ledus.S1G170800.t1"; gene_id "Ledus.S1G170800"
Ledus.S1	AUGUSTUS	CDS	16070412	16071350	0.51	+	0	transcript_id "Ledus.S1G170800.t1"; gene_id "Ledus.S1G170800"
Ledus.S1	AUGUSTUS	exon	16070412	16071350	.	+	.	transcript_id "Ledus.S1G170800.t1"; gene_id "Ledus.S1G170800"
Ledus.S1	AUGUSTUS	intron	16071351	16071444	.	+	.	transcript_id "Ledus.S1G170800.t1"; gene_id "Ledus.S1G170800"
Ledus.S1	AUGUSTUS	CDS	16071445	16071548	1	+	0	transcript_id "Ledus.S1G170800.t1"; gene_id "Ledus.S1G170800"
Ledus.S1	AUGUSTUS	exon	16071445	16071548	.	+	.	transcript_id "Ledus.S1G170800.t1"; gene_id "Ledus.S1G170800"
Ledus.S1	AUGUSTUS	intron	16071549	16071718	.	+	.	transcript_id "Ledus.S1G170800.t1"; gene_id "Ledus.S1G170800"
Ledus.S1	AUGUSTUS	CDS	16071719	16071863	1	+	1	transcript_id "Ledus.S1G170800.t1"; gene_id "Ledus.S1G170800"
Ledus.S1	AUGUSTUS	exon	16071719	16071863	.	+	.	transcript_id "Ledus.S1G170800.t1"; gene_id "Ledus.S1G170800"
Ledus.S1	AUGUSTUS	stop_codon	16071864	16071866	.	+	0	transcript_id "Ledus.S1G170800.t1"; gene_id "Ledus.S1G170800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12327.t1 is derived from g5948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11222045	11224497	.	-	.	Ledus.S4G148300
Ledus.S4	AUGUSTUS	transcript	11222045	11224497	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	stop_codon	11222042	11222044	.	-	0	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11222045	11222160	1	-	2	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11222045	11222160	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	intron	11222161	11222252	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11222253	11222343	1	-	0	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11222253	11222343	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	intron	11222344	11222427	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11222428	11222529	0.98	-	0	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11222428	11222529	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	intron	11222530	11222640	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11222641	11222691	1	-	0	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11222641	11222691	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	intron	11222692	11222788	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11222789	11222833	1	-	0	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11222789	11222833	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	intron	11222834	11222924	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11222925	11222980	1	-	2	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11222925	11222980	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	intron	11222981	11223067	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11223068	11223135	1	-	1	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11223068	11223135	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	intron	11223136	11223244	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11223245	11223411	0.92	-	0	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11223245	11223411	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	intron	11223412	11223533	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11223534	11223602	1	-	0	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11223534	11223602	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	intron	11223603	11223718	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11223719	11223781	1	-	0	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11223719	11223781	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	intron	11223782	11223939	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11223940	11224057	1	-	1	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11223940	11224057	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	intron	11224058	11224149	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11224150	11224205	1	-	0	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11224150	11224205	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	intron	11224206	11224287	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	CDS	11224288	11224497	0.61	-	0	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	exon	11224288	11224497	.	-	.	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
Ledus.S4	AUGUSTUS	start_codon	11224495	11224497	.	-	0	transcript_id "Ledus.S4G148300.t1"; gene_id "Ledus.S4G148300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1271.t1 is derived from g8132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9002433	9003677	.	-	.	Ledus.S2G115300
Ledus.S2	AUGUSTUS	transcript	9002433	9003677	.	-	.	transcript_id "Ledus.S2G115300.t1"; gene_id "Ledus.S2G115300"
Ledus.S2	AUGUSTUS	stop_codon	9002430	9002432	.	-	0	transcript_id "Ledus.S2G115300.t1"; gene_id "Ledus.S2G115300"
Ledus.S2	AUGUSTUS	CDS	9002433	9003368	0.93	-	0	transcript_id "Ledus.S2G115300.t1"; gene_id "Ledus.S2G115300"
Ledus.S2	AUGUSTUS	exon	9002433	9003368	.	-	.	transcript_id "Ledus.S2G115300.t1"; gene_id "Ledus.S2G115300"
Ledus.S2	AUGUSTUS	intron	9003369	9003455	.	-	.	transcript_id "Ledus.S2G115300.t1"; gene_id "Ledus.S2G115300"
Ledus.S2	AUGUSTUS	CDS	9003456	9003677	0.42	-	0	transcript_id "Ledus.S2G115300.t1"; gene_id "Ledus.S2G115300"
Ledus.S2	AUGUSTUS	exon	9003456	9003677	.	-	.	transcript_id "Ledus.S2G115300.t1"; gene_id "Ledus.S2G115300"
Ledus.S2	AUGUSTUS	start_codon	9003675	9003677	.	-	0	transcript_id "Ledus.S2G115300.t1"; gene_id "Ledus.S2G115300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7253.t1 is derived from g11924.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	492442	492722	.	-	.	Ledus.S5G003100
Ledus.S5	AUGUSTUS	transcript	492442	492722	.	-	.	transcript_id "Ledus.S5G003100.t1"; gene_id "Ledus.S5G003100"
Ledus.S5	AUGUSTUS	stop_codon	492439	492441	.	-	0	transcript_id "Ledus.S5G003100.t1"; gene_id "Ledus.S5G003100"
Ledus.S5	AUGUSTUS	CDS	492442	492511	0.93	-	1	transcript_id "Ledus.S5G003100.t1"; gene_id "Ledus.S5G003100"
Ledus.S5	AUGUSTUS	exon	492442	492511	.	-	.	transcript_id "Ledus.S5G003100.t1"; gene_id "Ledus.S5G003100"
Ledus.S5	AUGUSTUS	intron	492512	492564	.	-	.	transcript_id "Ledus.S5G003100.t1"; gene_id "Ledus.S5G003100"
Ledus.S5	AUGUSTUS	CDS	492565	492722	0.8	-	0	transcript_id "Ledus.S5G003100.t1"; gene_id "Ledus.S5G003100"
Ledus.S5	AUGUSTUS	exon	492565	492722	.	-	.	transcript_id "Ledus.S5G003100.t1"; gene_id "Ledus.S5G003100"
Ledus.S5	AUGUSTUS	start_codon	492720	492722	.	-	0	transcript_id "Ledus.S5G003100.t1"; gene_id "Ledus.S5G003100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10089.t1 is derived from g11119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12595716	12597632	.	-	.	Ledus.S3G156600
Ledus.S3	AUGUSTUS	transcript	12595716	12597632	.	-	.	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	stop_codon	12595713	12595715	.	-	0	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	CDS	12595716	12596894	0.98	-	0	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	exon	12595716	12596894	.	-	.	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	intron	12596895	12596973	.	-	.	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	CDS	12596974	12597162	1	-	0	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	exon	12596974	12597162	.	-	.	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	intron	12597163	12597347	.	-	.	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	CDS	12597348	12597390	0.47	-	1	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	exon	12597348	12597390	.	-	.	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	intron	12597391	12597621	.	-	.	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	CDS	12597622	12597632	0.37	-	0	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	exon	12597622	12597632	.	-	.	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
Ledus.S3	AUGUSTUS	start_codon	12597630	12597632	.	-	0	transcript_id "Ledus.S3G156600.t1"; gene_id "Ledus.S3G156600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10856.t1 is derived from g4474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	118729	120621	.	-	.	Ledus.S4G001200
Ledus.S4	AUGUSTUS	transcript	118729	120621	.	-	.	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	stop_codon	118726	118728	.	-	0	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	CDS	118729	118880	0.99	-	2	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	exon	118729	118880	.	-	.	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	intron	118881	119036	.	-	.	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	CDS	119037	119300	1	-	2	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	exon	119037	119300	.	-	.	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	intron	119301	119438	.	-	.	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	CDS	119439	119529	1	-	0	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	exon	119439	119529	.	-	.	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	intron	119530	119631	.	-	.	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	CDS	119632	119664	1	-	0	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	exon	119632	119664	.	-	.	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	intron	119665	119765	.	-	.	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	CDS	119766	120365	0.73	-	0	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	exon	119766	120365	.	-	.	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	intron	120366	120483	.	-	.	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	CDS	120484	120621	0.73	-	0	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	exon	120484	120621	.	-	.	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
Ledus.S4	AUGUSTUS	start_codon	120619	120621	.	-	0	transcript_id "Ledus.S4G001200.t1"; gene_id "Ledus.S4G001200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9116.t1 is derived from g10146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4670242	4671471	.	+	.	Ledus.S3G059300
Ledus.S3	AUGUSTUS	transcript	4670242	4671471	.	+	.	transcript_id "Ledus.S3G059300.t1"; gene_id "Ledus.S3G059300"
Ledus.S3	AUGUSTUS	start_codon	4670242	4670244	.	+	0	transcript_id "Ledus.S3G059300.t1"; gene_id "Ledus.S3G059300"
Ledus.S3	AUGUSTUS	CDS	4670242	4671471	0.63	+	0	transcript_id "Ledus.S3G059300.t1"; gene_id "Ledus.S3G059300"
Ledus.S3	AUGUSTUS	exon	4670242	4671471	.	+	.	transcript_id "Ledus.S3G059300.t1"; gene_id "Ledus.S3G059300"
Ledus.S3	AUGUSTUS	stop_codon	4671472	4671474	.	+	0	transcript_id "Ledus.S3G059300.t1"; gene_id "Ledus.S3G059300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8448.t1 is derived from g13120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11737250	11742183	.	+	.	Ledus.S5G122600
Ledus.S5	AUGUSTUS	transcript	11737250	11742183	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	start_codon	11737250	11737252	.	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11737250	11737333	0.93	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11737250	11737333	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11737334	11737416	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11737417	11737578	1	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11737417	11737578	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11737579	11738665	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11738666	11738765	1	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11738666	11738765	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11738766	11739006	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11739007	11739072	1	+	2	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11739007	11739072	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11739073	11739158	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11739159	11739241	1	+	2	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11739159	11739241	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11739242	11739361	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11739362	11739433	1	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11739362	11739433	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11739434	11739837	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11739838	11739987	0.99	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11739838	11739987	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11739988	11740106	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11740107	11740172	0.98	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11740107	11740172	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11740173	11740307	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11740308	11740373	1	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11740308	11740373	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11740374	11740473	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11740474	11740584	1	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11740474	11740584	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11740585	11740729	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11740730	11740819	1	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11740730	11740819	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11740820	11740928	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11740929	11741035	1	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11740929	11741035	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11741036	11741110	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11741111	11741225	1	+	1	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11741111	11741225	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11741226	11741327	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11741328	11741393	0.99	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11741328	11741393	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11741394	11741509	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11741510	11741625	1	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11741510	11741625	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11741626	11741812	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11741813	11741949	0.68	+	1	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11741813	11741949	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	intron	11741950	11742127	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	CDS	11742128	11742183	0.5	+	2	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	exon	11742128	11742183	.	+	.	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
Ledus.S5	AUGUSTUS	stop_codon	11742184	11742186	.	+	0	transcript_id "Ledus.S5G122600.t1"; gene_id "Ledus.S5G122600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4107.t1 is derived from g1543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14726249	14729868	.	-	.	Ledus.S1G152800
Ledus.S1	AUGUSTUS	transcript	14726249	14729868	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	stop_codon	14726246	14726248	.	-	0	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14726249	14726489	1	-	1	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14726249	14726489	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14726490	14726573	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14726574	14726707	1	-	0	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14726574	14726707	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14726708	14726790	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14726791	14727202	1	-	1	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14726791	14727202	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14727203	14727283	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14727284	14727385	1	-	1	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14727284	14727385	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14727386	14727483	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14727484	14727609	0.99	-	1	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14727484	14727609	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14727610	14727705	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14727706	14727744	0.83	-	1	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14727706	14727744	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14727745	14727942	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14727943	14728055	0.95	-	0	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14727943	14728055	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14728056	14728196	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14728197	14728262	0.97	-	0	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14728197	14728262	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14728263	14728377	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14728378	14728454	0.99	-	2	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14728378	14728454	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14728455	14728604	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14728605	14728759	1	-	1	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14728605	14728759	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14728760	14728847	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14728848	14729002	1	-	0	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14728848	14729002	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14729003	14729160	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14729161	14729322	0.99	-	0	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14729161	14729322	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14729323	14729440	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14729441	14729636	0.84	-	1	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14729441	14729636	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	intron	14729637	14729809	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	CDS	14729810	14729868	0.25	-	0	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	exon	14729810	14729868	.	-	.	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
Ledus.S1	AUGUSTUS	start_codon	14729866	14729868	.	-	0	transcript_id "Ledus.S1G152800.t1"; gene_id "Ledus.S1G152800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7378.t1 is derived from g12049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1757828	1760705	.	-	.	Ledus.S5G015600
Ledus.S5	AUGUSTUS	transcript	1757828	1760705	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	stop_codon	1757825	1757827	.	-	0	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	CDS	1757828	1757883	0.83	-	2	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	exon	1757828	1757883	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	intron	1757884	1758075	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	CDS	1758076	1758235	0.83	-	0	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	exon	1758076	1758235	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	intron	1758236	1758337	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	CDS	1758338	1758433	1	-	0	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	exon	1758338	1758433	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	intron	1758434	1758516	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	CDS	1758517	1758594	1	-	0	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	exon	1758517	1758594	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	intron	1758595	1758669	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	CDS	1758670	1758687	0.99	-	0	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	exon	1758670	1758687	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	intron	1758688	1758815	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	CDS	1758816	1758893	1	-	0	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	exon	1758816	1758893	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	intron	1758894	1759033	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	CDS	1759034	1759570	1	-	0	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	exon	1759034	1759570	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	intron	1759571	1759834	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	CDS	1759835	1759928	0.56	-	1	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	exon	1759835	1759928	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	intron	1759929	1760311	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	CDS	1760312	1760330	0.45	-	2	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	exon	1760312	1760330	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	intron	1760331	1760677	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	CDS	1760678	1760705	0.52	-	0	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	exon	1760678	1760705	.	-	.	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
Ledus.S5	AUGUSTUS	start_codon	1760703	1760705	.	-	0	transcript_id "Ledus.S5G015600.t1"; gene_id "Ledus.S5G015600"
# This transcript jg10428.t2 is derived from g11458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10429.t1 is derived from g11459.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15082310	15085586	.	+	.	Ledus.S3G190600
Ledus.S3	AUGUSTUS	transcript	15082310	15085586	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	start_codon	15082310	15082312	.	+	0	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	CDS	15082310	15082930	0.56	+	0	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	exon	15082310	15082930	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	intron	15082931	15083025	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	CDS	15083026	15083211	1	+	0	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	exon	15083026	15083211	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	intron	15083212	15083314	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	CDS	15083315	15083401	1	+	0	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	exon	15083315	15083401	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	intron	15083402	15083503	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	CDS	15083504	15083583	1	+	0	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	exon	15083504	15083583	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	intron	15083584	15083672	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	CDS	15083673	15083754	1	+	1	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	exon	15083673	15083754	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	intron	15083755	15083967	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	CDS	15083968	15083988	1	+	0	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	exon	15083968	15083988	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	intron	15083989	15084101	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	CDS	15084102	15084147	1	+	0	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	exon	15084102	15084147	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	intron	15084148	15084243	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	CDS	15084244	15084362	1	+	2	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	exon	15084244	15084362	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	intron	15084363	15084476	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	CDS	15084477	15084800	1	+	0	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	exon	15084477	15084800	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	intron	15084801	15084897	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	CDS	15084898	15084987	1	+	0	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	exon	15084898	15084987	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	intron	15084988	15085124	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	CDS	15085125	15085234	1	+	0	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	exon	15085125	15085234	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	intron	15085235	15085333	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	CDS	15085334	15085586	0.91	+	1	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	exon	15085334	15085586	.	+	.	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
Ledus.S3	AUGUSTUS	stop_codon	15085587	15085589	.	+	0	transcript_id "Ledus.S3G190600.t1"; gene_id "Ledus.S3G190600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg968.t1 is derived from g7829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6379228	6381710	.	-	.	Ledus.S2G085000
Ledus.S2	AUGUSTUS	transcript	6379228	6381710	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	stop_codon	6379225	6379227	.	-	0	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6379228	6379893	1	-	0	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6379228	6379893	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6379894	6379991	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6379992	6380135	1	-	0	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6379992	6380135	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6380136	6380227	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6380228	6380317	1	-	0	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6380228	6380317	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6380318	6380449	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6380450	6380643	1	-	2	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6380450	6380643	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6380644	6380743	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6380744	6380802	1	-	1	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6380744	6380802	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6380803	6380887	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6380888	6380967	1	-	0	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6380888	6380967	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6380968	6381051	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6381052	6381104	1	-	2	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6381052	6381104	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6381105	6381326	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6381327	6381413	0.86	-	2	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6381327	6381413	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6381414	6381508	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6381509	6381710	0.78	-	0	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6381509	6381710	.	-	.	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	start_codon	6381708	6381710	.	-	0	transcript_id "Ledus.S2G085000.t1"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	transcript	6379228	6381458	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	stop_codon	6379225	6379227	.	-	0	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6379228	6379893	1	-	0	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6379228	6379893	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6379894	6379991	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6379992	6380135	1	-	0	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6379992	6380135	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6380136	6380227	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6380228	6380317	1	-	0	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6380228	6380317	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6380318	6380449	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6380450	6380643	1	-	2	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6380450	6380643	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6380644	6380743	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6380744	6380802	1	-	1	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6380744	6380802	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6380803	6380887	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6380888	6380967	1	-	0	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6380888	6380967	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6380968	6381051	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6381052	6381133	0.64	-	1	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6381052	6381133	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6381134	6381215	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6381216	6381245	0.58	-	1	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6381216	6381245	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6381246	6381326	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6381327	6381367	0.51	-	0	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6381327	6381367	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	intron	6381368	6381434	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	CDS	6381435	6381458	0.15	-	0	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	exon	6381435	6381458	.	-	.	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
Ledus.S2	AUGUSTUS	start_codon	6381456	6381458	.	-	0	transcript_id "Ledus.S2G085000.t2"; gene_id "Ledus.S2G085000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2740.t1 is derived from g174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2768665	2768901	.	-	.	Ledus.S1G016100
Ledus.S1	AUGUSTUS	transcript	2768665	2768901	.	-	.	transcript_id "Ledus.S1G016100.t1"; gene_id "Ledus.S1G016100"
Ledus.S1	AUGUSTUS	stop_codon	2768662	2768664	.	-	0	transcript_id "Ledus.S1G016100.t1"; gene_id "Ledus.S1G016100"
Ledus.S1	AUGUSTUS	CDS	2768665	2768901	0.93	-	0	transcript_id "Ledus.S1G016100.t1"; gene_id "Ledus.S1G016100"
Ledus.S1	AUGUSTUS	exon	2768665	2768901	.	-	.	transcript_id "Ledus.S1G016100.t1"; gene_id "Ledus.S1G016100"
Ledus.S1	AUGUSTUS	start_codon	2768899	2768901	.	-	0	transcript_id "Ledus.S1G016100.t1"; gene_id "Ledus.S1G016100"
# This transcript jg9201.t2 is derived from g10231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9202.t1 is derived from g10232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5327574	5328185	.	+	.	Ledus.S3G067900
Ledus.S3	AUGUSTUS	transcript	5327574	5328185	.	+	.	transcript_id "Ledus.S3G067900.t1"; gene_id "Ledus.S3G067900"
Ledus.S3	AUGUSTUS	start_codon	5327574	5327576	.	+	0	transcript_id "Ledus.S3G067900.t1"; gene_id "Ledus.S3G067900"
Ledus.S3	AUGUSTUS	CDS	5327574	5328185	0.86	+	0	transcript_id "Ledus.S3G067900.t1"; gene_id "Ledus.S3G067900"
Ledus.S3	AUGUSTUS	exon	5327574	5328185	.	+	.	transcript_id "Ledus.S3G067900.t1"; gene_id "Ledus.S3G067900"
Ledus.S3	AUGUSTUS	stop_codon	5328186	5328188	.	+	0	transcript_id "Ledus.S3G067900.t1"; gene_id "Ledus.S3G067900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12085.t1 is derived from g5704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9443153	9446536	.	-	.	Ledus.S4G124100
Ledus.S4	AUGUSTUS	transcript	9443153	9446536	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	stop_codon	9443150	9443152	.	-	0	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9443153	9443230	1	-	0	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9443153	9443230	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	intron	9443231	9443356	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9443357	9443401	1	-	0	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9443357	9443401	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	intron	9443402	9443487	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9443488	9443602	1	-	1	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9443488	9443602	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	intron	9443603	9443718	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9443719	9443861	1	-	0	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9443719	9443861	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	intron	9443862	9444013	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9444014	9444104	1	-	1	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9444014	9444104	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	intron	9444105	9444280	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9444281	9444397	1	-	1	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9444281	9444397	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	intron	9444398	9444512	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9444513	9444651	0.78	-	2	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9444513	9444651	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	intron	9444652	9444753	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9444754	9444802	0.81	-	0	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9444754	9444802	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	intron	9444803	9444888	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9444889	9444981	1	-	0	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9444889	9444981	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	intron	9444982	9445067	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9445068	9445162	1	-	2	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9445068	9445162	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	intron	9445163	9445331	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9445332	9445422	1	-	0	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9445332	9445422	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	intron	9445423	9445506	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9445507	9445684	1	-	1	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9445507	9445684	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	intron	9445685	9446453	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	CDS	9446454	9446536	1	-	0	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	exon	9446454	9446536	.	-	.	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
Ledus.S4	AUGUSTUS	start_codon	9446534	9446536	.	-	0	transcript_id "Ledus.S4G124100.t1"; gene_id "Ledus.S4G124100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5999.t1 is derived from g3442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28207891	28208880	.	+	.	Ledus.S1G342000
Ledus.S1	AUGUSTUS	transcript	28207891	28208880	.	+	.	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	start_codon	28207891	28207893	.	+	0	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	CDS	28207891	28208088	0.95	+	0	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	exon	28207891	28208088	.	+	.	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	intron	28208089	28208174	.	+	.	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	CDS	28208175	28208286	0.99	+	0	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	exon	28208175	28208286	.	+	.	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	intron	28208287	28208399	.	+	.	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	CDS	28208400	28208564	0.93	+	2	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	exon	28208400	28208564	.	+	.	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	intron	28208565	28208657	.	+	.	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	CDS	28208658	28208704	1	+	2	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	exon	28208658	28208704	.	+	.	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	intron	28208705	28208781	.	+	.	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	CDS	28208782	28208880	1	+	0	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	exon	28208782	28208880	.	+	.	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
Ledus.S1	AUGUSTUS	stop_codon	28208881	28208883	.	+	0	transcript_id "Ledus.S1G342000.t1"; gene_id "Ledus.S1G342000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2243.t1 is derived from g9106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16442617	16443773	.	+	.	Ledus.S2G212500
Ledus.S2	AUGUSTUS	transcript	16442617	16443773	.	+	.	transcript_id "Ledus.S2G212500.t1"; gene_id "Ledus.S2G212500"
Ledus.S2	AUGUSTUS	start_codon	16442617	16442619	.	+	0	transcript_id "Ledus.S2G212500.t1"; gene_id "Ledus.S2G212500"
Ledus.S2	AUGUSTUS	CDS	16442617	16442803	0.25	+	0	transcript_id "Ledus.S2G212500.t1"; gene_id "Ledus.S2G212500"
Ledus.S2	AUGUSTUS	exon	16442617	16442803	.	+	.	transcript_id "Ledus.S2G212500.t1"; gene_id "Ledus.S2G212500"
Ledus.S2	AUGUSTUS	intron	16442804	16443624	.	+	.	transcript_id "Ledus.S2G212500.t1"; gene_id "Ledus.S2G212500"
Ledus.S2	AUGUSTUS	CDS	16443625	16443773	0.01	+	2	transcript_id "Ledus.S2G212500.t1"; gene_id "Ledus.S2G212500"
Ledus.S2	AUGUSTUS	exon	16443625	16443773	.	+	.	transcript_id "Ledus.S2G212500.t1"; gene_id "Ledus.S2G212500"
Ledus.S2	AUGUSTUS	stop_codon	16443774	16443776	.	+	0	transcript_id "Ledus.S2G212500.t1"; gene_id "Ledus.S2G212500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4882.t1 is derived from g2320.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20508420	20511035	.	+	.	Ledus.S1G230300
Ledus.S1	AUGUSTUS	transcript	20508420	20511035	.	+	.	transcript_id "Ledus.S1G230300.t1"; gene_id "Ledus.S1G230300"
Ledus.S1	AUGUSTUS	start_codon	20508420	20508422	.	+	0	transcript_id "Ledus.S1G230300.t1"; gene_id "Ledus.S1G230300"
Ledus.S1	AUGUSTUS	CDS	20508420	20511035	0.95	+	0	transcript_id "Ledus.S1G230300.t1"; gene_id "Ledus.S1G230300"
Ledus.S1	AUGUSTUS	exon	20508420	20511035	.	+	.	transcript_id "Ledus.S1G230300.t1"; gene_id "Ledus.S1G230300"
Ledus.S1	AUGUSTUS	stop_codon	20511036	20511038	.	+	0	transcript_id "Ledus.S1G230300.t1"; gene_id "Ledus.S1G230300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4061.t1 is derived from g1497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14382428	14382664	.	+	.	Ledus.S1G148200
Ledus.S1	AUGUSTUS	transcript	14382428	14382664	.	+	.	transcript_id "Ledus.S1G148200.t1"; gene_id "Ledus.S1G148200"
Ledus.S1	AUGUSTUS	start_codon	14382428	14382430	.	+	0	transcript_id "Ledus.S1G148200.t1"; gene_id "Ledus.S1G148200"
Ledus.S1	AUGUSTUS	CDS	14382428	14382664	0.55	+	0	transcript_id "Ledus.S1G148200.t1"; gene_id "Ledus.S1G148200"
Ledus.S1	AUGUSTUS	exon	14382428	14382664	.	+	.	transcript_id "Ledus.S1G148200.t1"; gene_id "Ledus.S1G148200"
Ledus.S1	AUGUSTUS	stop_codon	14382665	14382667	.	+	0	transcript_id "Ledus.S1G148200.t1"; gene_id "Ledus.S1G148200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5961.t1 is derived from g3404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28055607	28057461	.	+	.	Ledus.S1G338200
Ledus.S1	AUGUSTUS	transcript	28055607	28057461	.	+	.	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	start_codon	28055607	28055609	.	+	0	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	CDS	28055607	28056206	0.78	+	0	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	exon	28055607	28056206	.	+	.	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	intron	28056207	28056291	.	+	.	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	CDS	28056292	28056367	1	+	0	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	exon	28056292	28056367	.	+	.	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	intron	28056368	28056448	.	+	.	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	CDS	28056449	28056632	1	+	2	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	exon	28056449	28056632	.	+	.	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	intron	28056633	28056727	.	+	.	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	CDS	28056728	28056803	1	+	1	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	exon	28056728	28056803	.	+	.	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	intron	28056804	28056894	.	+	.	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	CDS	28056895	28057020	1	+	0	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	exon	28056895	28057020	.	+	.	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	intron	28057021	28057107	.	+	.	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	CDS	28057108	28057461	0.99	+	0	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	exon	28057108	28057461	.	+	.	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
Ledus.S1	AUGUSTUS	stop_codon	28057462	28057464	.	+	0	transcript_id "Ledus.S1G338200.t1"; gene_id "Ledus.S1G338200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7844.t1 is derived from g12515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7428139	7428360	.	+	.	Ledus.S5G062200
Ledus.S5	AUGUSTUS	transcript	7428139	7428360	.	+	.	transcript_id "Ledus.S5G062200.t1"; gene_id "Ledus.S5G062200"
Ledus.S5	AUGUSTUS	start_codon	7428139	7428141	.	+	0	transcript_id "Ledus.S5G062200.t1"; gene_id "Ledus.S5G062200"
Ledus.S5	AUGUSTUS	CDS	7428139	7428360	0.8	+	0	transcript_id "Ledus.S5G062200.t1"; gene_id "Ledus.S5G062200"
Ledus.S5	AUGUSTUS	exon	7428139	7428360	.	+	.	transcript_id "Ledus.S5G062200.t1"; gene_id "Ledus.S5G062200"
Ledus.S5	AUGUSTUS	stop_codon	7428361	7428363	.	+	0	transcript_id "Ledus.S5G062200.t1"; gene_id "Ledus.S5G062200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10246.t1 is derived from g11276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13801371	13803324	.	-	.	Ledus.S3G172300
Ledus.S3	AUGUSTUS	transcript	13801371	13803324	.	-	.	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	stop_codon	13801368	13801370	.	-	0	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	CDS	13801371	13801700	0.54	-	0	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	exon	13801371	13801700	.	-	.	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	intron	13801701	13801828	.	-	.	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	CDS	13801829	13802420	0.99	-	1	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	exon	13801829	13802420	.	-	.	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	intron	13802421	13802538	.	-	.	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	CDS	13802539	13802624	1	-	0	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	exon	13802539	13802624	.	-	.	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	intron	13802625	13802715	.	-	.	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	CDS	13802716	13802795	1	-	2	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	exon	13802716	13802795	.	-	.	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	intron	13802796	13802974	.	-	.	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	CDS	13802975	13803134	1	-	0	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	exon	13802975	13803134	.	-	.	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	intron	13803135	13803219	.	-	.	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	CDS	13803220	13803324	0.57	-	0	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	exon	13803220	13803324	.	-	.	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
Ledus.S3	AUGUSTUS	start_codon	13803322	13803324	.	-	0	transcript_id "Ledus.S3G172300.t1"; gene_id "Ledus.S3G172300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11690.t1 is derived from g5309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6029845	6032040	.	-	.	Ledus.S4G084600
Ledus.S4	AUGUSTUS	transcript	6029845	6032040	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	stop_codon	6029842	6029844	.	-	0	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	CDS	6029845	6030014	0.73	-	2	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	exon	6029845	6030014	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	intron	6030015	6030132	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	CDS	6030133	6030352	0.76	-	0	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	exon	6030133	6030352	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	intron	6030353	6030421	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	CDS	6030422	6030478	1	-	0	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	exon	6030422	6030478	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	intron	6030479	6030556	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	CDS	6030557	6030656	1	-	1	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	exon	6030557	6030656	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	intron	6030657	6030731	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	CDS	6030732	6030843	1	-	2	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	exon	6030732	6030843	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	intron	6030844	6030937	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	CDS	6030938	6031018	1	-	2	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	exon	6030938	6031018	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	intron	6031019	6031094	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	CDS	6031095	6031330	1	-	1	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	exon	6031095	6031330	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	intron	6031331	6031420	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	CDS	6031421	6031545	1	-	0	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	exon	6031421	6031545	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	intron	6031546	6031695	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	CDS	6031696	6032040	0.53	-	0	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	exon	6031696	6032040	.	-	.	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
Ledus.S4	AUGUSTUS	start_codon	6032038	6032040	.	-	0	transcript_id "Ledus.S4G084600.t1"; gene_id "Ledus.S4G084600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3892.t1 is derived from g1328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13442910	13443149	.	+	.	Ledus.S1G131300
Ledus.S1	AUGUSTUS	transcript	13442910	13443149	.	+	.	transcript_id "Ledus.S1G131300.t1"; gene_id "Ledus.S1G131300"
Ledus.S1	AUGUSTUS	start_codon	13442910	13442912	.	+	0	transcript_id "Ledus.S1G131300.t1"; gene_id "Ledus.S1G131300"
Ledus.S1	AUGUSTUS	CDS	13442910	13443149	0.96	+	0	transcript_id "Ledus.S1G131300.t1"; gene_id "Ledus.S1G131300"
Ledus.S1	AUGUSTUS	exon	13442910	13443149	.	+	.	transcript_id "Ledus.S1G131300.t1"; gene_id "Ledus.S1G131300"
Ledus.S1	AUGUSTUS	stop_codon	13443150	13443152	.	+	0	transcript_id "Ledus.S1G131300.t1"; gene_id "Ledus.S1G131300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4528.t1 is derived from g1965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17525826	17526080	.	-	.	Ledus.S1G194900
Ledus.S1	AUGUSTUS	transcript	17525826	17526080	.	-	.	transcript_id "Ledus.S1G194900.t1"; gene_id "Ledus.S1G194900"
Ledus.S1	AUGUSTUS	stop_codon	17525823	17525825	.	-	0	transcript_id "Ledus.S1G194900.t1"; gene_id "Ledus.S1G194900"
Ledus.S1	AUGUSTUS	CDS	17525826	17526080	0.55	-	0	transcript_id "Ledus.S1G194900.t1"; gene_id "Ledus.S1G194900"
Ledus.S1	AUGUSTUS	exon	17525826	17526080	.	-	.	transcript_id "Ledus.S1G194900.t1"; gene_id "Ledus.S1G194900"
Ledus.S1	AUGUSTUS	start_codon	17526078	17526080	.	-	0	transcript_id "Ledus.S1G194900.t1"; gene_id "Ledus.S1G194900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3697.t1 is derived from g1133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10961743	10963285	.	+	.	Ledus.S1G111800
Ledus.S1	AUGUSTUS	transcript	10961743	10963285	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	start_codon	10961743	10961745	.	+	0	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	CDS	10961743	10961813	0.97	+	0	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	exon	10961743	10961813	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	intron	10961814	10961911	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	CDS	10961912	10962049	0.49	+	1	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	exon	10961912	10962049	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	intron	10962050	10962255	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	CDS	10962256	10962353	0.77	+	1	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	exon	10962256	10962353	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	intron	10962354	10962489	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	CDS	10962490	10962562	1	+	2	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	exon	10962490	10962562	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	intron	10962563	10962703	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	CDS	10962704	10962791	1	+	1	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	exon	10962704	10962791	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	intron	10962792	10962916	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	CDS	10962917	10962973	1	+	0	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	exon	10962917	10962973	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	intron	10962974	10963067	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	CDS	10963068	10963146	1	+	0	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	exon	10963068	10963146	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	intron	10963147	10963274	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	CDS	10963275	10963285	1	+	2	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	exon	10963275	10963285	.	+	.	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
Ledus.S1	AUGUSTUS	stop_codon	10963286	10963288	.	+	0	transcript_id "Ledus.S1G111800.t1"; gene_id "Ledus.S1G111800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8163.t1 is derived from g12834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9542688	9542897	.	-	.	Ledus.S5G094100
Ledus.S5	AUGUSTUS	transcript	9542688	9542897	.	-	.	transcript_id "Ledus.S5G094100.t1"; gene_id "Ledus.S5G094100"
Ledus.S5	AUGUSTUS	stop_codon	9542685	9542687	.	-	0	transcript_id "Ledus.S5G094100.t1"; gene_id "Ledus.S5G094100"
Ledus.S5	AUGUSTUS	CDS	9542688	9542897	0.57	-	0	transcript_id "Ledus.S5G094100.t1"; gene_id "Ledus.S5G094100"
Ledus.S5	AUGUSTUS	exon	9542688	9542897	.	-	.	transcript_id "Ledus.S5G094100.t1"; gene_id "Ledus.S5G094100"
Ledus.S5	AUGUSTUS	start_codon	9542895	9542897	.	-	0	transcript_id "Ledus.S5G094100.t1"; gene_id "Ledus.S5G094100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11308.t1 is derived from g4926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3487173	3488000	.	-	.	Ledus.S4G046400
Ledus.S4	AUGUSTUS	transcript	3487173	3488000	.	-	.	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	stop_codon	3487170	3487172	.	-	0	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	CDS	3487173	3487360	1	-	2	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	exon	3487173	3487360	.	-	.	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	intron	3487361	3487453	.	-	.	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	CDS	3487454	3487532	1	-	0	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	exon	3487454	3487532	.	-	.	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	intron	3487533	3487668	.	-	.	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	CDS	3487669	3487746	1	-	0	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	exon	3487669	3487746	.	-	.	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	intron	3487747	3487829	.	-	.	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	CDS	3487830	3488000	0.61	-	0	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	exon	3487830	3488000	.	-	.	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
Ledus.S4	AUGUSTUS	start_codon	3487998	3488000	.	-	0	transcript_id "Ledus.S4G046400.t1"; gene_id "Ledus.S4G046400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1183.t1 is derived from g8044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8359717	8360227	.	+	.	Ledus.S2G106500
Ledus.S2	AUGUSTUS	transcript	8359717	8360227	.	+	.	transcript_id "Ledus.S2G106500.t1"; gene_id "Ledus.S2G106500"
Ledus.S2	AUGUSTUS	start_codon	8359717	8359719	.	+	0	transcript_id "Ledus.S2G106500.t1"; gene_id "Ledus.S2G106500"
Ledus.S2	AUGUSTUS	CDS	8359717	8359978	0.58	+	0	transcript_id "Ledus.S2G106500.t1"; gene_id "Ledus.S2G106500"
Ledus.S2	AUGUSTUS	exon	8359717	8359978	.	+	.	transcript_id "Ledus.S2G106500.t1"; gene_id "Ledus.S2G106500"
Ledus.S2	AUGUSTUS	intron	8359979	8360069	.	+	.	transcript_id "Ledus.S2G106500.t1"; gene_id "Ledus.S2G106500"
Ledus.S2	AUGUSTUS	CDS	8360070	8360227	0.58	+	2	transcript_id "Ledus.S2G106500.t1"; gene_id "Ledus.S2G106500"
Ledus.S2	AUGUSTUS	exon	8360070	8360227	.	+	.	transcript_id "Ledus.S2G106500.t1"; gene_id "Ledus.S2G106500"
Ledus.S2	AUGUSTUS	stop_codon	8360228	8360230	.	+	0	transcript_id "Ledus.S2G106500.t1"; gene_id "Ledus.S2G106500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8468.t1 is derived from g13140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11986200	11986505	.	-	.	Ledus.S5G124600
Ledus.S5	AUGUSTUS	transcript	11986200	11986505	.	-	.	transcript_id "Ledus.S5G124600.t1"; gene_id "Ledus.S5G124600"
Ledus.S5	AUGUSTUS	stop_codon	11986197	11986199	.	-	0	transcript_id "Ledus.S5G124600.t1"; gene_id "Ledus.S5G124600"
Ledus.S5	AUGUSTUS	CDS	11986200	11986505	0.36	-	0	transcript_id "Ledus.S5G124600.t1"; gene_id "Ledus.S5G124600"
Ledus.S5	AUGUSTUS	exon	11986200	11986505	.	-	.	transcript_id "Ledus.S5G124600.t1"; gene_id "Ledus.S5G124600"
Ledus.S5	AUGUSTUS	start_codon	11986503	11986505	.	-	0	transcript_id "Ledus.S5G124600.t1"; gene_id "Ledus.S5G124600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8197.t1 is derived from g12868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9804158	9806618	.	+	.	Ledus.S5G097500
Ledus.S5	AUGUSTUS	transcript	9804158	9806618	.	+	.	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	start_codon	9804158	9804160	.	+	0	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	CDS	9804158	9804694	0.94	+	0	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	exon	9804158	9804694	.	+	.	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	intron	9804695	9804795	.	+	.	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	CDS	9804796	9805461	1	+	0	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	exon	9804796	9805461	.	+	.	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	intron	9805462	9805553	.	+	.	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	CDS	9805554	9805677	0.61	+	0	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	exon	9805554	9805677	.	+	.	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	intron	9805678	9805795	.	+	.	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	CDS	9805796	9806447	0.54	+	2	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	exon	9805796	9806447	.	+	.	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	intron	9806448	9806551	.	+	.	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	CDS	9806552	9806618	0.9	+	1	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	exon	9806552	9806618	.	+	.	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
Ledus.S5	AUGUSTUS	stop_codon	9806619	9806621	.	+	0	transcript_id "Ledus.S5G097500.t1"; gene_id "Ledus.S5G097500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7924.t1 is derived from g12595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7856357	7860370	.	-	.	Ledus.S5G070200
Ledus.S5	AUGUSTUS	transcript	7856357	7860370	.	-	.	transcript_id "Ledus.S5G070200.t1"; gene_id "Ledus.S5G070200"
Ledus.S5	AUGUSTUS	stop_codon	7856354	7856356	.	-	0	transcript_id "Ledus.S5G070200.t1"; gene_id "Ledus.S5G070200"
Ledus.S5	AUGUSTUS	CDS	7856357	7860370	0.58	-	0	transcript_id "Ledus.S5G070200.t1"; gene_id "Ledus.S5G070200"
Ledus.S5	AUGUSTUS	exon	7856357	7860370	.	-	.	transcript_id "Ledus.S5G070200.t1"; gene_id "Ledus.S5G070200"
Ledus.S5	AUGUSTUS	start_codon	7860368	7860370	.	-	0	transcript_id "Ledus.S5G070200.t1"; gene_id "Ledus.S5G070200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7085.t1 is derived from g6616.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1472688	1480641	.	+	.	Ledus.C7G014600
Ledus.C7	AUGUSTUS	transcript	1472688	1480641	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	start_codon	1472688	1472690	.	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1472688	1472908	0.9	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1472688	1472908	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1472909	1473126	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1473127	1473295	0.95	+	1	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1473127	1473295	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1473296	1473561	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1473562	1473696	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1473562	1473696	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1473697	1473925	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1473926	1474255	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1473926	1474255	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1474256	1474407	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1474408	1474845	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1474408	1474845	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1474846	1474943	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1474944	1474994	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1474944	1474994	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1474995	1475079	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1475080	1475174	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1475080	1475174	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1475175	1475321	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1475322	1476020	0.48	+	1	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1475322	1476020	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1476021	1476170	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1476171	1476216	1	+	1	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1476171	1476216	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1476217	1476431	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1476432	1476524	0.98	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1476432	1476524	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1476525	1476633	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1476634	1476689	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1476634	1476689	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1476690	1477252	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1477253	1477376	1	+	1	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1477253	1477376	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1477377	1477893	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1477894	1478114	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1477894	1478114	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1478115	1478208	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1478209	1478272	1	+	1	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1478209	1478272	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1478273	1478409	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1478410	1478583	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1478410	1478583	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1478584	1478696	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1478697	1478739	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1478697	1478739	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1478740	1478837	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1478838	1479028	1	+	2	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1478838	1479028	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1479029	1479224	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1479225	1479299	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1479225	1479299	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1479300	1479391	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1479392	1479466	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1479392	1479466	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1479467	1479552	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1479553	1480035	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1479553	1480035	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1480036	1480123	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1480124	1480180	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1480124	1480180	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1480181	1480273	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1480274	1480315	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1480274	1480315	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1480316	1480403	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1480404	1480466	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1480404	1480466	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1480467	1480554	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1480555	1480641	1	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1480555	1480641	.	+	.	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	stop_codon	1480642	1480644	.	+	0	transcript_id "Ledus.C7G014600.t1"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	transcript	1472688	1480641	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	start_codon	1472688	1472690	.	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1472688	1472908	0.92	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1472688	1472908	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1472909	1473126	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1473127	1473295	0.83	+	1	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1473127	1473295	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1473296	1473558	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1473559	1473696	0.83	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1473559	1473696	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1473697	1473925	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1473926	1474255	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1473926	1474255	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1474256	1474407	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1474408	1474845	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1474408	1474845	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1474846	1474943	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1474944	1474994	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1474944	1474994	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1474995	1475079	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1475080	1475174	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1475080	1475174	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1475175	1475321	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1475322	1476020	0.45	+	1	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1475322	1476020	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1476021	1476170	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1476171	1476216	1	+	1	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1476171	1476216	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1476217	1476431	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1476432	1476524	0.96	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1476432	1476524	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1476525	1476633	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1476634	1476689	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1476634	1476689	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1476690	1477252	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1477253	1477376	1	+	1	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1477253	1477376	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1477377	1477893	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1477894	1478114	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1477894	1478114	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1478115	1478208	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1478209	1478272	1	+	1	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1478209	1478272	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1478273	1478409	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1478410	1478583	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1478410	1478583	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1478584	1478696	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1478697	1478739	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1478697	1478739	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1478740	1478837	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1478838	1479028	1	+	2	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1478838	1479028	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1479029	1479224	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1479225	1479299	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1479225	1479299	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1479300	1479391	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1479392	1479466	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1479392	1479466	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1479467	1479552	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1479553	1480035	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1479553	1480035	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1480036	1480123	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1480124	1480180	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1480124	1480180	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1480181	1480273	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1480274	1480315	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1480274	1480315	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1480316	1480403	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1480404	1480466	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1480404	1480466	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	intron	1480467	1480554	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	CDS	1480555	1480641	1	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	exon	1480555	1480641	.	+	.	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
Ledus.C7	AUGUSTUS	stop_codon	1480642	1480644	.	+	0	transcript_id "Ledus.C7G014600.t2"; gene_id "Ledus.C7G014600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12336.t1 is derived from g5957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11272476	11272859	.	+	.	Ledus.S4G149200
Ledus.S4	AUGUSTUS	transcript	11272476	11272859	.	+	.	transcript_id "Ledus.S4G149200.t1"; gene_id "Ledus.S4G149200"
Ledus.S4	AUGUSTUS	start_codon	11272476	11272478	.	+	0	transcript_id "Ledus.S4G149200.t1"; gene_id "Ledus.S4G149200"
Ledus.S4	AUGUSTUS	CDS	11272476	11272859	0.77	+	0	transcript_id "Ledus.S4G149200.t1"; gene_id "Ledus.S4G149200"
Ledus.S4	AUGUSTUS	exon	11272476	11272859	.	+	.	transcript_id "Ledus.S4G149200.t1"; gene_id "Ledus.S4G149200"
Ledus.S4	AUGUSTUS	stop_codon	11272860	11272862	.	+	0	transcript_id "Ledus.S4G149200.t1"; gene_id "Ledus.S4G149200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13111.t1 is derived from g6921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5916488	5916685	.	+	.	Ledus.S6G017300
Ledus.S6	AUGUSTUS	transcript	5916488	5916685	.	+	.	transcript_id "Ledus.S6G017300.t1"; gene_id "Ledus.S6G017300"
Ledus.S6	AUGUSTUS	start_codon	5916488	5916490	.	+	0	transcript_id "Ledus.S6G017300.t1"; gene_id "Ledus.S6G017300"
Ledus.S6	AUGUSTUS	CDS	5916488	5916685	0.68	+	0	transcript_id "Ledus.S6G017300.t1"; gene_id "Ledus.S6G017300"
Ledus.S6	AUGUSTUS	exon	5916488	5916685	.	+	.	transcript_id "Ledus.S6G017300.t1"; gene_id "Ledus.S6G017300"
Ledus.S6	AUGUSTUS	stop_codon	5916686	5916688	.	+	0	transcript_id "Ledus.S6G017300.t1"; gene_id "Ledus.S6G017300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9412.t1 is derived from g10442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6598727	6600060	.	+	.	Ledus.S3G088900
Ledus.S3	AUGUSTUS	transcript	6598727	6600060	.	+	.	transcript_id "Ledus.S3G088900.t1"; gene_id "Ledus.S3G088900"
Ledus.S3	AUGUSTUS	start_codon	6598727	6598729	.	+	0	transcript_id "Ledus.S3G088900.t1"; gene_id "Ledus.S3G088900"
Ledus.S3	AUGUSTUS	CDS	6598727	6599318	0.97	+	0	transcript_id "Ledus.S3G088900.t1"; gene_id "Ledus.S3G088900"
Ledus.S3	AUGUSTUS	exon	6598727	6599318	.	+	.	transcript_id "Ledus.S3G088900.t1"; gene_id "Ledus.S3G088900"
Ledus.S3	AUGUSTUS	intron	6599319	6599461	.	+	.	transcript_id "Ledus.S3G088900.t1"; gene_id "Ledus.S3G088900"
Ledus.S3	AUGUSTUS	CDS	6599462	6600060	1	+	2	transcript_id "Ledus.S3G088900.t1"; gene_id "Ledus.S3G088900"
Ledus.S3	AUGUSTUS	exon	6599462	6600060	.	+	.	transcript_id "Ledus.S3G088900.t1"; gene_id "Ledus.S3G088900"
Ledus.S3	AUGUSTUS	stop_codon	6600061	6600063	.	+	0	transcript_id "Ledus.S3G088900.t1"; gene_id "Ledus.S3G088900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg690.t1 is derived from g7551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4197648	4200642	.	+	.	Ledus.S2G057200
Ledus.S2	AUGUSTUS	transcript	4197648	4200642	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	start_codon	4197648	4197650	.	+	0	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	CDS	4197648	4197758	0.62	+	0	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	exon	4197648	4197758	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	intron	4197759	4197834	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	CDS	4197835	4197929	1	+	0	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	exon	4197835	4197929	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	intron	4197930	4198008	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	CDS	4198009	4198106	1	+	1	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	exon	4198009	4198106	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	intron	4198107	4198181	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	CDS	4198182	4198328	1	+	2	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	exon	4198182	4198328	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	intron	4198329	4198406	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	CDS	4198407	4198509	1	+	2	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	exon	4198407	4198509	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	intron	4198510	4198601	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	CDS	4198602	4198768	1	+	1	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	exon	4198602	4198768	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	intron	4198769	4198868	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	CDS	4198869	4199322	0.83	+	2	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	exon	4198869	4199322	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	intron	4199323	4199401	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	CDS	4199402	4199629	1	+	1	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	exon	4199402	4199629	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	intron	4199630	4199702	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	CDS	4199703	4200031	1	+	1	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	exon	4199703	4200031	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	intron	4200032	4200106	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	CDS	4200107	4200642	1	+	2	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	exon	4200107	4200642	.	+	.	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
Ledus.S2	AUGUSTUS	stop_codon	4200643	4200645	.	+	0	transcript_id "Ledus.S2G057200.t1"; gene_id "Ledus.S2G057200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5188.t1 is derived from g2627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22323489	22325756	.	-	.	Ledus.S1G260900
Ledus.S1	AUGUSTUS	transcript	22323489	22325756	.	-	.	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	stop_codon	22323486	22323488	.	-	0	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	CDS	22323489	22323940	0.8	-	2	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	exon	22323489	22323940	.	-	.	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	intron	22323941	22324043	.	-	.	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	CDS	22324044	22324306	0.45	-	1	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	exon	22324044	22324306	.	-	.	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	intron	22324307	22324476	.	-	.	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	CDS	22324477	22324835	0.53	-	0	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	exon	22324477	22324835	.	-	.	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	intron	22324836	22324940	.	-	.	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	CDS	22324941	22325158	0.42	-	2	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	exon	22324941	22325158	.	-	.	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	intron	22325159	22325335	.	-	.	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	CDS	22325336	22325756	0.24	-	0	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	exon	22325336	22325756	.	-	.	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
Ledus.S1	AUGUSTUS	start_codon	22325754	22325756	.	-	0	transcript_id "Ledus.S1G260900.t1"; gene_id "Ledus.S1G260900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1752.t1 is derived from g8614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12331523	12332886	.	+	.	Ledus.S2G163400
Ledus.S2	AUGUSTUS	transcript	12331523	12332886	.	+	.	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	start_codon	12331523	12331525	.	+	0	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	CDS	12331523	12331631	1	+	0	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	exon	12331523	12331631	.	+	.	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	intron	12331632	12331723	.	+	.	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	CDS	12331724	12331948	1	+	2	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	exon	12331724	12331948	.	+	.	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	intron	12331949	12332030	.	+	.	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	CDS	12332031	12332237	1	+	2	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	exon	12332031	12332237	.	+	.	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	intron	12332238	12332329	.	+	.	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	CDS	12332330	12332593	0.99	+	2	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	exon	12332330	12332593	.	+	.	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	intron	12332594	12332674	.	+	.	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	CDS	12332675	12332886	0.87	+	2	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	exon	12332675	12332886	.	+	.	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
Ledus.S2	AUGUSTUS	stop_codon	12332887	12332889	.	+	0	transcript_id "Ledus.S2G163400.t1"; gene_id "Ledus.S2G163400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3280.t1 is derived from g715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7231947	7233565	.	+	.	Ledus.S1G070100
Ledus.S1	AUGUSTUS	transcript	7231947	7233565	.	+	.	transcript_id "Ledus.S1G070100.t1"; gene_id "Ledus.S1G070100"
Ledus.S1	AUGUSTUS	start_codon	7231947	7231949	.	+	0	transcript_id "Ledus.S1G070100.t1"; gene_id "Ledus.S1G070100"
Ledus.S1	AUGUSTUS	CDS	7231947	7232414	0.99	+	0	transcript_id "Ledus.S1G070100.t1"; gene_id "Ledus.S1G070100"
Ledus.S1	AUGUSTUS	exon	7231947	7232414	.	+	.	transcript_id "Ledus.S1G070100.t1"; gene_id "Ledus.S1G070100"
Ledus.S1	AUGUSTUS	intron	7232415	7232493	.	+	.	transcript_id "Ledus.S1G070100.t1"; gene_id "Ledus.S1G070100"
Ledus.S1	AUGUSTUS	CDS	7232494	7233364	0.99	+	0	transcript_id "Ledus.S1G070100.t1"; gene_id "Ledus.S1G070100"
Ledus.S1	AUGUSTUS	exon	7232494	7233364	.	+	.	transcript_id "Ledus.S1G070100.t1"; gene_id "Ledus.S1G070100"
Ledus.S1	AUGUSTUS	intron	7233365	7233482	.	+	.	transcript_id "Ledus.S1G070100.t1"; gene_id "Ledus.S1G070100"
Ledus.S1	AUGUSTUS	CDS	7233483	7233565	0.4	+	2	transcript_id "Ledus.S1G070100.t1"; gene_id "Ledus.S1G070100"
Ledus.S1	AUGUSTUS	exon	7233483	7233565	.	+	.	transcript_id "Ledus.S1G070100.t1"; gene_id "Ledus.S1G070100"
Ledus.S1	AUGUSTUS	stop_codon	7233566	7233568	.	+	0	transcript_id "Ledus.S1G070100.t1"; gene_id "Ledus.S1G070100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9041.t1 is derived from g10071.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4037427	4037696	.	-	.	Ledus.S3G051800
Ledus.S3	AUGUSTUS	transcript	4037427	4037696	.	-	.	transcript_id "Ledus.S3G051800.t1"; gene_id "Ledus.S3G051800"
Ledus.S3	AUGUSTUS	stop_codon	4037424	4037426	.	-	0	transcript_id "Ledus.S3G051800.t1"; gene_id "Ledus.S3G051800"
Ledus.S3	AUGUSTUS	CDS	4037427	4037696	1	-	0	transcript_id "Ledus.S3G051800.t1"; gene_id "Ledus.S3G051800"
Ledus.S3	AUGUSTUS	exon	4037427	4037696	.	-	.	transcript_id "Ledus.S3G051800.t1"; gene_id "Ledus.S3G051800"
Ledus.S3	AUGUSTUS	start_codon	4037694	4037696	.	-	0	transcript_id "Ledus.S3G051800.t1"; gene_id "Ledus.S3G051800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8239.t1 is derived from g12910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10087852	10089373	.	+	.	Ledus.S5G101700
Ledus.S5	AUGUSTUS	transcript	10087852	10089373	.	+	.	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	start_codon	10087852	10087854	.	+	0	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10087852	10087934	0.95	+	0	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10087852	10087934	.	+	.	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	intron	10087935	10088029	.	+	.	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10088030	10088646	0.97	+	1	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10088030	10088646	.	+	.	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	intron	10088647	10088741	.	+	.	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10088742	10088819	1	+	2	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10088742	10088819	.	+	.	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	intron	10088820	10088891	.	+	.	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10088892	10088965	0.98	+	2	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10088892	10088965	.	+	.	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	intron	10088966	10089067	.	+	.	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10089068	10089175	1	+	0	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10089068	10089175	.	+	.	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	intron	10089176	10089259	.	+	.	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10089260	10089373	0.87	+	0	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10089260	10089373	.	+	.	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	stop_codon	10089374	10089376	.	+	0	transcript_id "Ledus.S5G101700.t1"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	transcript	10087852	10089373	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	start_codon	10087852	10087854	.	+	0	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10087852	10087934	0.96	+	0	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10087852	10087934	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	intron	10087935	10088029	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10088030	10088514	0.49	+	1	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10088030	10088514	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	intron	10088515	10088585	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10088586	10088646	0.54	+	2	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10088586	10088646	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	intron	10088647	10088736	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10088737	10088819	0.64	+	1	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10088737	10088819	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	intron	10088820	10088891	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10088892	10088965	1	+	2	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10088892	10088965	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	intron	10088966	10089067	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10089068	10089175	1	+	0	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10089068	10089175	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	intron	10089176	10089259	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	CDS	10089260	10089373	0.81	+	0	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	exon	10089260	10089373	.	+	.	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
Ledus.S5	AUGUSTUS	stop_codon	10089374	10089376	.	+	0	transcript_id "Ledus.S5G101700.t2"; gene_id "Ledus.S5G101700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5693.t1 is derived from g3132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25943412	25944137	.	-	.	Ledus.S1G311400
Ledus.S1	AUGUSTUS	transcript	25943412	25944137	.	-	.	transcript_id "Ledus.S1G311400.t1"; gene_id "Ledus.S1G311400"
Ledus.S1	AUGUSTUS	stop_codon	25943409	25943411	.	-	0	transcript_id "Ledus.S1G311400.t1"; gene_id "Ledus.S1G311400"
Ledus.S1	AUGUSTUS	CDS	25943412	25944137	0.73	-	0	transcript_id "Ledus.S1G311400.t1"; gene_id "Ledus.S1G311400"
Ledus.S1	AUGUSTUS	exon	25943412	25944137	.	-	.	transcript_id "Ledus.S1G311400.t1"; gene_id "Ledus.S1G311400"
Ledus.S1	AUGUSTUS	start_codon	25944135	25944137	.	-	0	transcript_id "Ledus.S1G311400.t1"; gene_id "Ledus.S1G311400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6127.t1 is derived from g3570.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29063866	29064319	.	+	.	Ledus.S1G354800
Ledus.S1	AUGUSTUS	transcript	29063866	29064319	.	+	.	transcript_id "Ledus.S1G354800.t1"; gene_id "Ledus.S1G354800"
Ledus.S1	AUGUSTUS	start_codon	29063866	29063868	.	+	0	transcript_id "Ledus.S1G354800.t1"; gene_id "Ledus.S1G354800"
Ledus.S1	AUGUSTUS	CDS	29063866	29063967	0.68	+	0	transcript_id "Ledus.S1G354800.t1"; gene_id "Ledus.S1G354800"
Ledus.S1	AUGUSTUS	exon	29063866	29063967	.	+	.	transcript_id "Ledus.S1G354800.t1"; gene_id "Ledus.S1G354800"
Ledus.S1	AUGUSTUS	intron	29063968	29064079	.	+	.	transcript_id "Ledus.S1G354800.t1"; gene_id "Ledus.S1G354800"
Ledus.S1	AUGUSTUS	CDS	29064080	29064319	0.88	+	0	transcript_id "Ledus.S1G354800.t1"; gene_id "Ledus.S1G354800"
Ledus.S1	AUGUSTUS	exon	29064080	29064319	.	+	.	transcript_id "Ledus.S1G354800.t1"; gene_id "Ledus.S1G354800"
Ledus.S1	AUGUSTUS	stop_codon	29064320	29064322	.	+	0	transcript_id "Ledus.S1G354800.t1"; gene_id "Ledus.S1G354800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7496.t1 is derived from g12167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3453245	3454218	.	-	.	Ledus.S5G027400
Ledus.S5	AUGUSTUS	transcript	3453245	3454218	.	-	.	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	stop_codon	3453242	3453244	.	-	0	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	CDS	3453245	3453358	0.88	-	0	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	exon	3453245	3453358	.	-	.	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	intron	3453359	3453436	.	-	.	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	CDS	3453437	3453537	0.89	-	2	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	exon	3453437	3453537	.	-	.	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	intron	3453538	3453644	.	-	.	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	CDS	3453645	3453684	0.71	-	0	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	exon	3453645	3453684	.	-	.	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	intron	3453685	3453909	.	-	.	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	CDS	3453910	3454218	0.58	-	0	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	exon	3453910	3454218	.	-	.	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
Ledus.S5	AUGUSTUS	start_codon	3454216	3454218	.	-	0	transcript_id "Ledus.S5G027400.t1"; gene_id "Ledus.S5G027400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4433.t1 is derived from g1869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17097327	17098271	.	+	.	Ledus.S1G185400
Ledus.S1	AUGUSTUS	transcript	17097327	17098271	.	+	.	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	start_codon	17097327	17097329	.	+	0	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	CDS	17097327	17097698	0.57	+	0	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	exon	17097327	17097698	.	+	.	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	intron	17097699	17097790	.	+	.	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	CDS	17097791	17097839	0.58	+	0	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	exon	17097791	17097839	.	+	.	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	intron	17097840	17097927	.	+	.	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	CDS	17097928	17097959	0.48	+	2	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	exon	17097928	17097959	.	+	.	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	intron	17097960	17098052	.	+	.	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	CDS	17098053	17098271	0.9	+	0	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	exon	17098053	17098271	.	+	.	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
Ledus.S1	AUGUSTUS	stop_codon	17098272	17098274	.	+	0	transcript_id "Ledus.S1G185400.t1"; gene_id "Ledus.S1G185400"
# This transcript jg10552.t2 is derived from g11582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10552.t3 is derived from g11582.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10553.t1 is derived from g11583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16073544	16075295	.	-	.	Ledus.S3G203000
Ledus.S3	AUGUSTUS	transcript	16073544	16075295	.	-	.	transcript_id "Ledus.S3G203000.t1"; gene_id "Ledus.S3G203000"
Ledus.S3	AUGUSTUS	stop_codon	16073541	16073543	.	-	0	transcript_id "Ledus.S3G203000.t1"; gene_id "Ledus.S3G203000"
Ledus.S3	AUGUSTUS	CDS	16073544	16075295	0.92	-	0	transcript_id "Ledus.S3G203000.t1"; gene_id "Ledus.S3G203000"
Ledus.S3	AUGUSTUS	exon	16073544	16075295	.	-	.	transcript_id "Ledus.S3G203000.t1"; gene_id "Ledus.S3G203000"
Ledus.S3	AUGUSTUS	start_codon	16075293	16075295	.	-	0	transcript_id "Ledus.S3G203000.t1"; gene_id "Ledus.S3G203000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1240.t1 is derived from g8101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8796156	8797938	.	-	.	Ledus.S2G112200
Ledus.S2	AUGUSTUS	transcript	8796156	8797938	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	stop_codon	8796153	8796155	.	-	0	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	CDS	8796156	8796263	1	-	0	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	exon	8796156	8796263	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	intron	8796264	8796384	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	CDS	8796385	8796525	0.88	-	0	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	exon	8796385	8796525	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	intron	8796526	8796586	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	CDS	8796587	8796668	0.99	-	1	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	exon	8796587	8796668	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	intron	8796669	8796742	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	CDS	8796743	8796885	1	-	0	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	exon	8796743	8796885	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	intron	8796886	8796970	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	CDS	8796971	8797093	1	-	0	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	exon	8796971	8797093	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	intron	8797094	8797179	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	CDS	8797180	8797204	1	-	1	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	exon	8797180	8797204	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	intron	8797205	8797316	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	CDS	8797317	8797370	1	-	1	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	exon	8797317	8797370	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	intron	8797371	8797521	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	CDS	8797522	8797637	1	-	0	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	exon	8797522	8797637	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	intron	8797638	8797722	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	CDS	8797723	8797938	0.46	-	0	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	exon	8797723	8797938	.	-	.	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
Ledus.S2	AUGUSTUS	start_codon	8797936	8797938	.	-	0	transcript_id "Ledus.S2G112200.t1"; gene_id "Ledus.S2G112200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg210.t1 is derived from g7071.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	905438	905842	.	-	.	Ledus.S2G009200
Ledus.S2	AUGUSTUS	transcript	905438	905842	.	-	.	transcript_id "Ledus.S2G009200.t1"; gene_id "Ledus.S2G009200"
Ledus.S2	AUGUSTUS	stop_codon	905435	905437	.	-	0	transcript_id "Ledus.S2G009200.t1"; gene_id "Ledus.S2G009200"
Ledus.S2	AUGUSTUS	CDS	905438	905842	1	-	0	transcript_id "Ledus.S2G009200.t1"; gene_id "Ledus.S2G009200"
Ledus.S2	AUGUSTUS	exon	905438	905842	.	-	.	transcript_id "Ledus.S2G009200.t1"; gene_id "Ledus.S2G009200"
Ledus.S2	AUGUSTUS	start_codon	905840	905842	.	-	0	transcript_id "Ledus.S2G009200.t1"; gene_id "Ledus.S2G009200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5974.t1 is derived from g3417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28114732	28116419	.	-	.	Ledus.S1G339500
Ledus.S1	AUGUSTUS	transcript	28114732	28116419	.	-	.	transcript_id "Ledus.S1G339500.t1"; gene_id "Ledus.S1G339500"
Ledus.S1	AUGUSTUS	stop_codon	28114729	28114731	.	-	0	transcript_id "Ledus.S1G339500.t1"; gene_id "Ledus.S1G339500"
Ledus.S1	AUGUSTUS	CDS	28114732	28115766	0.82	-	0	transcript_id "Ledus.S1G339500.t1"; gene_id "Ledus.S1G339500"
Ledus.S1	AUGUSTUS	exon	28114732	28115766	.	-	.	transcript_id "Ledus.S1G339500.t1"; gene_id "Ledus.S1G339500"
Ledus.S1	AUGUSTUS	intron	28115767	28115847	.	-	.	transcript_id "Ledus.S1G339500.t1"; gene_id "Ledus.S1G339500"
Ledus.S1	AUGUSTUS	CDS	28115848	28115996	1	-	2	transcript_id "Ledus.S1G339500.t1"; gene_id "Ledus.S1G339500"
Ledus.S1	AUGUSTUS	exon	28115848	28115996	.	-	.	transcript_id "Ledus.S1G339500.t1"; gene_id "Ledus.S1G339500"
Ledus.S1	AUGUSTUS	intron	28115997	28116073	.	-	.	transcript_id "Ledus.S1G339500.t1"; gene_id "Ledus.S1G339500"
Ledus.S1	AUGUSTUS	CDS	28116074	28116419	1	-	0	transcript_id "Ledus.S1G339500.t1"; gene_id "Ledus.S1G339500"
Ledus.S1	AUGUSTUS	exon	28116074	28116419	.	-	.	transcript_id "Ledus.S1G339500.t1"; gene_id "Ledus.S1G339500"
Ledus.S1	AUGUSTUS	start_codon	28116417	28116419	.	-	0	transcript_id "Ledus.S1G339500.t1"; gene_id "Ledus.S1G339500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4045.t1 is derived from g1481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14305134	14307402	.	+	.	Ledus.S1G146600
Ledus.S1	AUGUSTUS	transcript	14305134	14307402	.	+	.	transcript_id "Ledus.S1G146600.t1"; gene_id "Ledus.S1G146600"
Ledus.S1	AUGUSTUS	start_codon	14305134	14305136	.	+	0	transcript_id "Ledus.S1G146600.t1"; gene_id "Ledus.S1G146600"
Ledus.S1	AUGUSTUS	CDS	14305134	14305352	0.97	+	0	transcript_id "Ledus.S1G146600.t1"; gene_id "Ledus.S1G146600"
Ledus.S1	AUGUSTUS	exon	14305134	14305352	.	+	.	transcript_id "Ledus.S1G146600.t1"; gene_id "Ledus.S1G146600"
Ledus.S1	AUGUSTUS	intron	14305353	14305464	.	+	.	transcript_id "Ledus.S1G146600.t1"; gene_id "Ledus.S1G146600"
Ledus.S1	AUGUSTUS	CDS	14305465	14307402	0.38	+	0	transcript_id "Ledus.S1G146600.t1"; gene_id "Ledus.S1G146600"
Ledus.S1	AUGUSTUS	exon	14305465	14307402	.	+	.	transcript_id "Ledus.S1G146600.t1"; gene_id "Ledus.S1G146600"
Ledus.S1	AUGUSTUS	stop_codon	14307403	14307405	.	+	0	transcript_id "Ledus.S1G146600.t1"; gene_id "Ledus.S1G146600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12023.t1 is derived from g5642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8839329	8841025	.	-	.	Ledus.S4G117900
Ledus.S4	AUGUSTUS	transcript	8839329	8841025	.	-	.	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	stop_codon	8839326	8839328	.	-	0	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	CDS	8839329	8839374	1	-	1	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	exon	8839329	8839374	.	-	.	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	intron	8839375	8839466	.	-	.	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	CDS	8839467	8839591	1	-	0	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	exon	8839467	8839591	.	-	.	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	intron	8839592	8839731	.	-	.	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	CDS	8839732	8839812	1	-	0	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	exon	8839732	8839812	.	-	.	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	intron	8839813	8840020	.	-	.	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	CDS	8840021	8840161	1	-	0	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	exon	8840021	8840161	.	-	.	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	intron	8840162	8840279	.	-	.	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	CDS	8840280	8840479	0.99	-	2	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	exon	8840280	8840479	.	-	.	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	intron	8840480	8840796	.	-	.	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	CDS	8840797	8841025	0.97	-	0	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	exon	8840797	8841025	.	-	.	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
Ledus.S4	AUGUSTUS	start_codon	8841023	8841025	.	-	0	transcript_id "Ledus.S4G117900.t1"; gene_id "Ledus.S4G117900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8860.t1 is derived from g9890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2335757	2341565	.	+	.	Ledus.S3G033700
Ledus.S3	AUGUSTUS	transcript	2335757	2341565	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	start_codon	2335757	2335759	.	+	0	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2335757	2335909	1	+	0	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2335757	2335909	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2335910	2336013	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2336014	2336363	0.5	+	0	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2336014	2336363	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2336364	2336499	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2336500	2336523	0.9	+	1	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2336500	2336523	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2336524	2336618	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2336619	2336698	0.99	+	1	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2336619	2336698	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2336699	2336792	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2336793	2337782	0.98	+	2	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2336793	2337782	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2337783	2337934	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2337935	2338065	1	+	2	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2337935	2338065	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2338066	2338178	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2338179	2338845	0.43	+	0	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2338179	2338845	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2338846	2338908	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2338909	2338932	0.49	+	2	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2338909	2338932	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2338933	2339077	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2339078	2339151	1	+	2	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2339078	2339151	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2339152	2339289	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2339290	2339385	0.57	+	0	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2339290	2339385	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2339386	2339714	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2339715	2339819	0.5	+	0	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2339715	2339819	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2339820	2339972	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2339973	2339987	0.54	+	0	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2339973	2339987	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2339988	2340305	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2340306	2341447	0.86	+	0	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2340306	2341447	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	intron	2341448	2341537	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	CDS	2341538	2341565	1	+	1	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	exon	2341538	2341565	.	+	.	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
Ledus.S3	AUGUSTUS	stop_codon	2341566	2341568	.	+	0	transcript_id "Ledus.S3G033700.t1"; gene_id "Ledus.S3G033700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6525.t1 is derived from g3968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32076429	32079125	.	+	.	Ledus.S1G394600
Ledus.S1	AUGUSTUS	transcript	32076429	32079125	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	start_codon	32076429	32076431	.	+	0	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	CDS	32076429	32076692	1	+	0	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	exon	32076429	32076692	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	intron	32076693	32077115	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	CDS	32077116	32077208	0.98	+	0	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	exon	32077116	32077208	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	intron	32077209	32077322	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	CDS	32077323	32077430	0.99	+	0	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	exon	32077323	32077430	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	intron	32077431	32077929	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	CDS	32077930	32078044	0.95	+	0	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	exon	32077930	32078044	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	intron	32078045	32078161	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	CDS	32078162	32078295	0.97	+	2	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	exon	32078162	32078295	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	intron	32078296	32078402	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	CDS	32078403	32078504	0.99	+	0	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	exon	32078403	32078504	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	intron	32078505	32078594	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	CDS	32078595	32078687	1	+	0	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	exon	32078595	32078687	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	intron	32078688	32078787	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	CDS	32078788	32078923	1	+	0	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	exon	32078788	32078923	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	intron	32078924	32079012	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	CDS	32079013	32079125	0.81	+	2	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	exon	32079013	32079125	.	+	.	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
Ledus.S1	AUGUSTUS	stop_codon	32079126	32079128	.	+	0	transcript_id "Ledus.S1G394600.t1"; gene_id "Ledus.S1G394600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6208.t1 is derived from g3651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29650981	29653387	.	+	.	Ledus.S1G362900
Ledus.S1	AUGUSTUS	transcript	29650981	29653387	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	start_codon	29650981	29650983	.	+	0	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	CDS	29650981	29651141	0.98	+	0	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	exon	29650981	29651141	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	intron	29651142	29651230	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	CDS	29651231	29651446	1	+	1	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	exon	29651231	29651446	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	intron	29651447	29651546	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	CDS	29651547	29651637	1	+	1	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	exon	29651547	29651637	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	intron	29651638	29651725	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	CDS	29651726	29651905	1	+	0	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	exon	29651726	29651905	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	intron	29651906	29652023	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	CDS	29652024	29652113	0.93	+	0	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	exon	29652024	29652113	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	intron	29652114	29652273	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	CDS	29652274	29652381	1	+	0	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	exon	29652274	29652381	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	intron	29652382	29652504	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	CDS	29652505	29652558	0.91	+	0	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	exon	29652505	29652558	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	intron	29652559	29652667	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	CDS	29652668	29652782	0.97	+	0	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	exon	29652668	29652782	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	intron	29652783	29652884	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	CDS	29652885	29653045	0.98	+	2	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	exon	29652885	29653045	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	intron	29653046	29653122	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	CDS	29653123	29653218	0.74	+	0	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	exon	29653123	29653218	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	intron	29653219	29653336	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	CDS	29653337	29653387	0.73	+	0	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	exon	29653337	29653387	.	+	.	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
Ledus.S1	AUGUSTUS	stop_codon	29653388	29653390	.	+	0	transcript_id "Ledus.S1G362900.t1"; gene_id "Ledus.S1G362900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12413.t1 is derived from g6034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11866545	11870509	.	+	.	Ledus.S4G156900
Ledus.S4	AUGUSTUS	transcript	11866545	11870509	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	start_codon	11866545	11866547	.	+	0	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	CDS	11866545	11866656	0.98	+	0	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	exon	11866545	11866656	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	intron	11866657	11866745	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	CDS	11866746	11866786	1	+	2	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	exon	11866746	11866786	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	intron	11866787	11866967	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	CDS	11866968	11867090	1	+	0	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	exon	11866968	11867090	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	intron	11867091	11867247	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	CDS	11867248	11867335	1	+	0	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	exon	11867248	11867335	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	intron	11867336	11867477	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	CDS	11867478	11867563	1	+	2	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	exon	11867478	11867563	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	intron	11867564	11867664	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	CDS	11867665	11867877	0.98	+	0	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	exon	11867665	11867877	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	intron	11867878	11868036	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	CDS	11868037	11868206	1	+	0	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	exon	11868037	11868206	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	intron	11868207	11868350	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	CDS	11868351	11868509	1	+	1	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	exon	11868351	11868509	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	intron	11868510	11868598	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	CDS	11868599	11868679	1	+	1	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	exon	11868599	11868679	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	intron	11868680	11868846	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	CDS	11868847	11868901	1	+	1	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	exon	11868847	11868901	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	intron	11868902	11869017	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	CDS	11869018	11869119	0.52	+	0	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	exon	11869018	11869119	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	intron	11869120	11869471	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	CDS	11869472	11870509	0.51	+	0	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	exon	11869472	11870509	.	+	.	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
Ledus.S4	AUGUSTUS	stop_codon	11870510	11870512	.	+	0	transcript_id "Ledus.S4G156900.t1"; gene_id "Ledus.S4G156900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10140.t1 is derived from g11170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13014537	13014815	.	+	.	Ledus.S3G161700
Ledus.S3	AUGUSTUS	transcript	13014537	13014815	.	+	.	transcript_id "Ledus.S3G161700.t1"; gene_id "Ledus.S3G161700"
Ledus.S3	AUGUSTUS	start_codon	13014537	13014539	.	+	0	transcript_id "Ledus.S3G161700.t1"; gene_id "Ledus.S3G161700"
Ledus.S3	AUGUSTUS	CDS	13014537	13014815	0.89	+	0	transcript_id "Ledus.S3G161700.t1"; gene_id "Ledus.S3G161700"
Ledus.S3	AUGUSTUS	exon	13014537	13014815	.	+	.	transcript_id "Ledus.S3G161700.t1"; gene_id "Ledus.S3G161700"
Ledus.S3	AUGUSTUS	stop_codon	13014816	13014818	.	+	0	transcript_id "Ledus.S3G161700.t1"; gene_id "Ledus.S3G161700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6412.t1 is derived from g3855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31124497	31125326	.	-	.	Ledus.S1G383300
Ledus.S1	AUGUSTUS	transcript	31124497	31125326	.	-	.	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	stop_codon	31124494	31124496	.	-	0	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	CDS	31124497	31124718	0.75	-	0	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	exon	31124497	31124718	.	-	.	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	intron	31124719	31124965	.	-	.	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	CDS	31124966	31124994	1	-	2	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	exon	31124966	31124994	.	-	.	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	intron	31124995	31125144	.	-	.	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	CDS	31125145	31125176	0.93	-	1	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	exon	31125145	31125176	.	-	.	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	intron	31125177	31125237	.	-	.	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	CDS	31125238	31125326	0.76	-	0	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	exon	31125238	31125326	.	-	.	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	start_codon	31125324	31125326	.	-	0	transcript_id "Ledus.S1G383300.t1"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	transcript	31124600	31125326	.	-	.	transcript_id "Ledus.S1G383300.t2"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	stop_codon	31124597	31124599	.	-	0	transcript_id "Ledus.S1G383300.t2"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	CDS	31124600	31124718	0.47	-	2	transcript_id "Ledus.S1G383300.t2"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	exon	31124600	31124718	.	-	.	transcript_id "Ledus.S1G383300.t2"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	intron	31124719	31125144	.	-	.	transcript_id "Ledus.S1G383300.t2"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	CDS	31125145	31125176	0.65	-	1	transcript_id "Ledus.S1G383300.t2"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	exon	31125145	31125176	.	-	.	transcript_id "Ledus.S1G383300.t2"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	intron	31125177	31125237	.	-	.	transcript_id "Ledus.S1G383300.t2"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	CDS	31125238	31125326	0.58	-	0	transcript_id "Ledus.S1G383300.t2"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	exon	31125238	31125326	.	-	.	transcript_id "Ledus.S1G383300.t2"; gene_id "Ledus.S1G383300"
Ledus.S1	AUGUSTUS	start_codon	31125324	31125326	.	-	0	transcript_id "Ledus.S1G383300.t2"; gene_id "Ledus.S1G383300"
# This transcript jg9544.t2 is derived from g10574.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9545.t1 is derived from g10575.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7714884	7715775	.	+	.	Ledus.S3G102200
Ledus.S3	AUGUSTUS	transcript	7714884	7715775	.	+	.	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	start_codon	7714884	7714886	.	+	0	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	CDS	7714884	7714926	0.65	+	0	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	exon	7714884	7714926	.	+	.	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	intron	7714927	7715013	.	+	.	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	CDS	7715014	7715018	0.38	+	2	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	exon	7715014	7715018	.	+	.	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	intron	7715019	7715329	.	+	.	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	CDS	7715330	7715377	0.35	+	0	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	exon	7715330	7715377	.	+	.	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	intron	7715378	7715475	.	+	.	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	CDS	7715476	7715633	0.25	+	0	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	exon	7715476	7715633	.	+	.	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	intron	7715634	7715774	.	+	.	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	CDS	7715775	7715775	0.51	+	1	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	exon	7715775	7715775	.	+	.	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
Ledus.S3	AUGUSTUS	stop_codon	7715776	7715778	.	+	0	transcript_id "Ledus.S3G102200.t1"; gene_id "Ledus.S3G102200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12072.t1 is derived from g5691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9333405	9335100	.	+	.	Ledus.S4G122800
Ledus.S4	AUGUSTUS	transcript	9333405	9335100	.	+	.	transcript_id "Ledus.S4G122800.t1"; gene_id "Ledus.S4G122800"
Ledus.S4	AUGUSTUS	start_codon	9333405	9333407	.	+	0	transcript_id "Ledus.S4G122800.t1"; gene_id "Ledus.S4G122800"
Ledus.S4	AUGUSTUS	CDS	9333405	9334837	0.75	+	0	transcript_id "Ledus.S4G122800.t1"; gene_id "Ledus.S4G122800"
Ledus.S4	AUGUSTUS	exon	9333405	9334837	.	+	.	transcript_id "Ledus.S4G122800.t1"; gene_id "Ledus.S4G122800"
Ledus.S4	AUGUSTUS	intron	9334838	9334931	.	+	.	transcript_id "Ledus.S4G122800.t1"; gene_id "Ledus.S4G122800"
Ledus.S4	AUGUSTUS	CDS	9334932	9335100	1	+	1	transcript_id "Ledus.S4G122800.t1"; gene_id "Ledus.S4G122800"
Ledus.S4	AUGUSTUS	exon	9334932	9335100	.	+	.	transcript_id "Ledus.S4G122800.t1"; gene_id "Ledus.S4G122800"
Ledus.S4	AUGUSTUS	stop_codon	9335101	9335103	.	+	0	transcript_id "Ledus.S4G122800.t1"; gene_id "Ledus.S4G122800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11049.t1 is derived from g4667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1414766	1415170	.	+	.	Ledus.S4G020500
Ledus.S4	AUGUSTUS	transcript	1414766	1415170	.	+	.	transcript_id "Ledus.S4G020500.t1"; gene_id "Ledus.S4G020500"
Ledus.S4	AUGUSTUS	start_codon	1414766	1414768	.	+	0	transcript_id "Ledus.S4G020500.t1"; gene_id "Ledus.S4G020500"
Ledus.S4	AUGUSTUS	CDS	1414766	1415170	0.7	+	0	transcript_id "Ledus.S4G020500.t1"; gene_id "Ledus.S4G020500"
Ledus.S4	AUGUSTUS	exon	1414766	1415170	.	+	.	transcript_id "Ledus.S4G020500.t1"; gene_id "Ledus.S4G020500"
Ledus.S4	AUGUSTUS	stop_codon	1415171	1415173	.	+	0	transcript_id "Ledus.S4G020500.t1"; gene_id "Ledus.S4G020500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10743.t1 is derived from g11774.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17445370	17446235	.	-	.	Ledus.S3G222000
Ledus.S3	AUGUSTUS	transcript	17445370	17446235	.	-	.	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	stop_codon	17445367	17445369	.	-	0	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	CDS	17445370	17445429	0.99	-	0	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	exon	17445370	17445429	.	-	.	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	intron	17445430	17445554	.	-	.	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	CDS	17445555	17445668	1	-	0	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	exon	17445555	17445668	.	-	.	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	intron	17445669	17445753	.	-	.	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	CDS	17445754	17445906	1	-	0	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	exon	17445754	17445906	.	-	.	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	intron	17445907	17445984	.	-	.	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	CDS	17445985	17446068	1	-	0	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	exon	17445985	17446068	.	-	.	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	intron	17446069	17446166	.	-	.	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	CDS	17446167	17446235	1	-	0	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	exon	17446167	17446235	.	-	.	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
Ledus.S3	AUGUSTUS	start_codon	17446233	17446235	.	-	0	transcript_id "Ledus.S3G222000.t1"; gene_id "Ledus.S3G222000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5277.t1 is derived from g2716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22834679	22835067	.	+	.	Ledus.S1G269800
Ledus.S1	AUGUSTUS	transcript	22834679	22835067	.	+	.	transcript_id "Ledus.S1G269800.t1"; gene_id "Ledus.S1G269800"
Ledus.S1	AUGUSTUS	start_codon	22834679	22834681	.	+	0	transcript_id "Ledus.S1G269800.t1"; gene_id "Ledus.S1G269800"
Ledus.S1	AUGUSTUS	CDS	22834679	22834699	0.71	+	0	transcript_id "Ledus.S1G269800.t1"; gene_id "Ledus.S1G269800"
Ledus.S1	AUGUSTUS	exon	22834679	22834699	.	+	.	transcript_id "Ledus.S1G269800.t1"; gene_id "Ledus.S1G269800"
Ledus.S1	AUGUSTUS	intron	22834700	22834771	.	+	.	transcript_id "Ledus.S1G269800.t1"; gene_id "Ledus.S1G269800"
Ledus.S1	AUGUSTUS	CDS	22834772	22834906	0.8	+	0	transcript_id "Ledus.S1G269800.t1"; gene_id "Ledus.S1G269800"
Ledus.S1	AUGUSTUS	exon	22834772	22834906	.	+	.	transcript_id "Ledus.S1G269800.t1"; gene_id "Ledus.S1G269800"
Ledus.S1	AUGUSTUS	intron	22834907	22835001	.	+	.	transcript_id "Ledus.S1G269800.t1"; gene_id "Ledus.S1G269800"
Ledus.S1	AUGUSTUS	CDS	22835002	22835067	1	+	0	transcript_id "Ledus.S1G269800.t1"; gene_id "Ledus.S1G269800"
Ledus.S1	AUGUSTUS	exon	22835002	22835067	.	+	.	transcript_id "Ledus.S1G269800.t1"; gene_id "Ledus.S1G269800"
Ledus.S1	AUGUSTUS	stop_codon	22835068	22835070	.	+	0	transcript_id "Ledus.S1G269800.t1"; gene_id "Ledus.S1G269800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7922.t1 is derived from g12593.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7852564	7853302	.	-	.	Ledus.S5G070000
Ledus.S5	AUGUSTUS	transcript	7852564	7853302	.	-	.	transcript_id "Ledus.S5G070000.t1"; gene_id "Ledus.S5G070000"
Ledus.S5	AUGUSTUS	stop_codon	7852561	7852563	.	-	0	transcript_id "Ledus.S5G070000.t1"; gene_id "Ledus.S5G070000"
Ledus.S5	AUGUSTUS	CDS	7852564	7852722	0.93	-	0	transcript_id "Ledus.S5G070000.t1"; gene_id "Ledus.S5G070000"
Ledus.S5	AUGUSTUS	exon	7852564	7852722	.	-	.	transcript_id "Ledus.S5G070000.t1"; gene_id "Ledus.S5G070000"
Ledus.S5	AUGUSTUS	intron	7852723	7852836	.	-	.	transcript_id "Ledus.S5G070000.t1"; gene_id "Ledus.S5G070000"
Ledus.S5	AUGUSTUS	CDS	7852837	7852909	0.77	-	1	transcript_id "Ledus.S5G070000.t1"; gene_id "Ledus.S5G070000"
Ledus.S5	AUGUSTUS	exon	7852837	7852909	.	-	.	transcript_id "Ledus.S5G070000.t1"; gene_id "Ledus.S5G070000"
Ledus.S5	AUGUSTUS	intron	7852910	7853066	.	-	.	transcript_id "Ledus.S5G070000.t1"; gene_id "Ledus.S5G070000"
Ledus.S5	AUGUSTUS	CDS	7853067	7853302	0.7	-	0	transcript_id "Ledus.S5G070000.t1"; gene_id "Ledus.S5G070000"
Ledus.S5	AUGUSTUS	exon	7853067	7853302	.	-	.	transcript_id "Ledus.S5G070000.t1"; gene_id "Ledus.S5G070000"
Ledus.S5	AUGUSTUS	start_codon	7853300	7853302	.	-	0	transcript_id "Ledus.S5G070000.t1"; gene_id "Ledus.S5G070000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3638.t1 is derived from g1074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10324609	10327432	.	-	.	Ledus.S1G105900
Ledus.S1	AUGUSTUS	transcript	10324609	10327432	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	stop_codon	10324606	10324608	.	-	0	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	CDS	10324609	10324628	1	-	2	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	exon	10324609	10324628	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	intron	10324629	10324785	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	CDS	10324786	10324977	0.51	-	2	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	exon	10324786	10324977	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	intron	10324978	10325053	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	CDS	10325054	10325154	0.92	-	1	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	exon	10325054	10325154	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	intron	10325155	10325248	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	CDS	10325249	10325281	1	-	1	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	exon	10325249	10325281	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	intron	10325282	10325419	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	CDS	10325420	10325553	0.71	-	0	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	exon	10325420	10325553	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	intron	10325554	10325655	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	CDS	10325656	10325706	0.98	-	0	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	exon	10325656	10325706	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	intron	10325707	10325890	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	CDS	10325891	10326087	1	-	2	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	exon	10325891	10326087	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	intron	10326088	10327032	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	CDS	10327033	10327432	0.84	-	0	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	exon	10327033	10327432	.	-	.	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
Ledus.S1	AUGUSTUS	start_codon	10327430	10327432	.	-	0	transcript_id "Ledus.S1G105900.t1"; gene_id "Ledus.S1G105900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7288.t1 is derived from g11959.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	764977	779408	.	+	.	Ledus.S5G006600
Ledus.S5	AUGUSTUS	transcript	764977	779408	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	start_codon	764977	764979	.	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	764977	765075	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	764977	765075	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	765076	765418	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	765419	765722	0.97	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	765419	765722	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	765723	765848	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	765849	766053	0.94	+	2	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	765849	766053	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	766054	766159	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	766160	766496	1	+	1	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	766160	766496	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	766497	766595	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	766596	766709	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	766596	766709	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	766710	766786	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	766787	766915	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	766787	766915	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	766916	767303	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	767304	767495	0.99	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	767304	767495	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	767496	767890	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	767891	768028	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	767891	768028	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	768029	768116	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	768117	768242	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	768117	768242	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	768243	768327	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	768328	768578	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	768328	768578	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	768579	768910	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	768911	769014	1	+	1	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	768911	769014	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	769015	769159	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	769160	769254	1	+	2	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	769160	769254	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	769255	769343	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	769344	769694	0.88	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	769344	769694	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	769695	769963	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	769964	770179	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	769964	770179	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	770180	770404	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	770405	770516	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	770405	770516	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	770517	770647	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	770648	770745	1	+	2	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	770648	770745	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	770746	770829	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	770830	770975	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	770830	770975	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	770976	771067	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	771068	771176	1	+	1	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	771068	771176	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	771177	771246	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	771247	771393	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	771247	771393	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	771394	771525	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	771526	771573	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	771526	771573	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	771574	771693	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	771694	771822	0.96	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	771694	771822	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	771823	771949	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	771950	772049	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	771950	772049	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	772050	772139	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	772140	772315	1	+	2	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	772140	772315	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	772316	772440	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	772441	772529	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	772441	772529	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	772530	772609	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	772610	772715	1	+	1	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	772610	772715	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	772716	772975	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	772976	773071	0.97	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	772976	773071	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	773072	773174	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	773175	773324	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	773175	773324	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	773325	773463	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	773464	773646	0.92	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	773464	773646	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	773647	773764	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	773765	773976	0.95	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	773765	773976	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	773977	774096	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	774097	774211	1	+	1	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	774097	774211	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	774212	774359	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	774360	774476	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	774360	774476	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	774477	774574	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	774575	774643	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	774575	774643	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	774644	774737	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	774738	774815	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	774738	774815	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	774816	775089	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	775090	775206	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	775090	775206	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	775207	775339	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	775340	775469	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	775340	775469	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	775470	775607	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	775608	775711	1	+	2	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	775608	775711	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	775712	775810	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	775811	775939	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	775811	775939	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	775940	776076	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	776077	776163	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	776077	776163	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	776164	776398	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	776399	776545	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	776399	776545	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	776546	776714	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	776715	776834	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	776715	776834	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	776835	777067	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	777068	777115	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	777068	777115	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	777116	777198	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	777199	777333	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	777199	777333	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	777334	777461	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	777462	777523	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	777462	777523	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	777524	777823	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	777824	777977	1	+	1	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	777824	777977	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	777978	778134	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	778135	778326	0.89	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	778135	778326	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	778327	778416	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	778417	778521	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	778417	778521	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	778522	778646	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	778647	778781	1	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	778647	778781	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	778782	778875	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	778876	779103	0.97	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	778876	779103	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	intron	779104	779228	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	CDS	779229	779408	0.99	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	exon	779229	779408	.	+	.	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
Ledus.S5	AUGUSTUS	stop_codon	779409	779411	.	+	0	transcript_id "Ledus.S5G006600.t1"; gene_id "Ledus.S5G006600"
# This transcript jg8455.t2 is derived from g13127.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8456.t1 is derived from g13128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11787278	11788308	.	-	.	Ledus.S5G123400
Ledus.S5	AUGUSTUS	transcript	11787278	11788308	.	-	.	transcript_id "Ledus.S5G123400.t1"; gene_id "Ledus.S5G123400"
Ledus.S5	AUGUSTUS	stop_codon	11787275	11787277	.	-	0	transcript_id "Ledus.S5G123400.t1"; gene_id "Ledus.S5G123400"
Ledus.S5	AUGUSTUS	CDS	11787278	11787654	0.98	-	2	transcript_id "Ledus.S5G123400.t1"; gene_id "Ledus.S5G123400"
Ledus.S5	AUGUSTUS	exon	11787278	11787654	.	-	.	transcript_id "Ledus.S5G123400.t1"; gene_id "Ledus.S5G123400"
Ledus.S5	AUGUSTUS	intron	11787655	11787797	.	-	.	transcript_id "Ledus.S5G123400.t1"; gene_id "Ledus.S5G123400"
Ledus.S5	AUGUSTUS	CDS	11787798	11788308	1	-	0	transcript_id "Ledus.S5G123400.t1"; gene_id "Ledus.S5G123400"
Ledus.S5	AUGUSTUS	exon	11787798	11788308	.	-	.	transcript_id "Ledus.S5G123400.t1"; gene_id "Ledus.S5G123400"
Ledus.S5	AUGUSTUS	start_codon	11788306	11788308	.	-	0	transcript_id "Ledus.S5G123400.t1"; gene_id "Ledus.S5G123400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12761.t1 is derived from g6383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14342571	14344822	.	-	.	Ledus.S4G191700
Ledus.S4	AUGUSTUS	transcript	14342571	14344822	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	stop_codon	14342568	14342570	.	-	0	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	CDS	14342571	14342704	0.91	-	2	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	exon	14342571	14342704	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	intron	14342705	14342836	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	CDS	14342837	14342918	1	-	0	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	exon	14342837	14342918	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	intron	14342919	14343084	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	CDS	14343085	14343146	1	-	2	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	exon	14343085	14343146	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	intron	14343147	14343289	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	CDS	14343290	14343413	0.96	-	0	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	exon	14343290	14343413	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	intron	14343414	14343517	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	CDS	14343518	14343688	0.88	-	0	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	exon	14343518	14343688	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	intron	14343689	14343919	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	CDS	14343920	14344128	1	-	2	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	exon	14343920	14344128	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	intron	14344129	14344677	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	CDS	14344678	14344822	0.99	-	0	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	exon	14344678	14344822	.	-	.	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
Ledus.S4	AUGUSTUS	start_codon	14344820	14344822	.	-	0	transcript_id "Ledus.S4G191700.t1"; gene_id "Ledus.S4G191700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12994.t1 is derived from g6804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2086396	2087015	.	-	.	Ledus.S6G005600
Ledus.S6	AUGUSTUS	transcript	2086396	2087015	.	-	.	transcript_id "Ledus.S6G005600.t1"; gene_id "Ledus.S6G005600"
Ledus.S6	AUGUSTUS	stop_codon	2086393	2086395	.	-	0	transcript_id "Ledus.S6G005600.t1"; gene_id "Ledus.S6G005600"
Ledus.S6	AUGUSTUS	CDS	2086396	2086548	0.61	-	0	transcript_id "Ledus.S6G005600.t1"; gene_id "Ledus.S6G005600"
Ledus.S6	AUGUSTUS	exon	2086396	2086548	.	-	.	transcript_id "Ledus.S6G005600.t1"; gene_id "Ledus.S6G005600"
Ledus.S6	AUGUSTUS	intron	2086549	2086691	.	-	.	transcript_id "Ledus.S6G005600.t1"; gene_id "Ledus.S6G005600"
Ledus.S6	AUGUSTUS	CDS	2086692	2087015	0.54	-	0	transcript_id "Ledus.S6G005600.t1"; gene_id "Ledus.S6G005600"
Ledus.S6	AUGUSTUS	exon	2086692	2087015	.	-	.	transcript_id "Ledus.S6G005600.t1"; gene_id "Ledus.S6G005600"
Ledus.S6	AUGUSTUS	start_codon	2087013	2087015	.	-	0	transcript_id "Ledus.S6G005600.t1"; gene_id "Ledus.S6G005600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1027.t1 is derived from g7888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6836849	6843811	.	-	.	Ledus.S2G090900
Ledus.S2	AUGUSTUS	transcript	6836849	6843811	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	stop_codon	6836846	6836848	.	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6836849	6836876	1	-	1	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6836849	6836876	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6836877	6836956	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6836957	6837042	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6836957	6837042	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6837043	6837153	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6837154	6837191	1	-	2	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6837154	6837191	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6837192	6837343	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6837344	6837416	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6837344	6837416	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6837417	6837531	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6837532	6837594	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6837532	6837594	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6837595	6837716	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6837717	6837817	1	-	2	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6837717	6837817	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6837818	6837929	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6837930	6838113	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6837930	6838113	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6838114	6838197	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6838198	6839238	0.95	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6838198	6839238	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6839239	6839350	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6839351	6839417	1	-	1	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6839351	6839417	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6839418	6839504	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6839505	6839620	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6839505	6839620	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6839621	6839837	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6839838	6839924	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6839838	6839924	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6839925	6840141	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6840142	6840231	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6840142	6840231	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6840232	6840330	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6840331	6840399	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6840331	6840399	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6840400	6840495	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6840496	6840567	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6840496	6840567	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6840568	6840781	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6840782	6840839	1	-	1	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6840782	6840839	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6840840	6841089	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6841090	6841144	1	-	2	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6841090	6841144	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6841145	6841315	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6841316	6841383	1	-	1	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6841316	6841383	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6841384	6841545	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6841546	6841628	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6841546	6841628	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6841629	6841710	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6841711	6841774	1	-	1	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6841711	6841774	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6841775	6841900	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6841901	6841972	1	-	1	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6841901	6841972	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6841973	6842048	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6842049	6842108	1	-	1	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6842049	6842108	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6842109	6842232	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6842233	6842290	1	-	2	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6842233	6842290	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6842291	6842407	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6842408	6842441	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6842408	6842441	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6842442	6842664	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6842665	6842757	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6842665	6842757	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6842758	6842942	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6842943	6843011	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6842943	6843011	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6843012	6843159	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6843160	6843360	1	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6843160	6843360	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6843361	6843503	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6843504	6843634	1	-	2	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6843504	6843634	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	intron	6843635	6843720	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	CDS	6843721	6843811	0.91	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	exon	6843721	6843811	.	-	.	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
Ledus.S2	AUGUSTUS	start_codon	6843809	6843811	.	-	0	transcript_id "Ledus.S2G090900.t1"; gene_id "Ledus.S2G090900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4063.t1 is derived from g1499.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14413286	14415682	.	-	.	Ledus.S1G148400
Ledus.S1	AUGUSTUS	transcript	14413286	14415682	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	stop_codon	14413283	14413285	.	-	0	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	CDS	14413286	14413362	0.99	-	2	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	exon	14413286	14413362	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	intron	14413363	14413443	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	CDS	14413444	14413488	1	-	2	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	exon	14413444	14413488	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	intron	14413489	14413571	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	CDS	14413572	14413775	1	-	2	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	exon	14413572	14413775	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	intron	14413776	14413861	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	CDS	14413862	14413952	0.89	-	0	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	exon	14413862	14413952	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	intron	14413953	14414069	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	CDS	14414070	14414144	0.88	-	0	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	exon	14414070	14414144	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	intron	14414145	14414271	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	CDS	14414272	14414411	1	-	2	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	exon	14414272	14414411	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	intron	14414412	14414512	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	CDS	14414513	14414808	1	-	1	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	exon	14414513	14414808	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	intron	14414809	14414964	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	CDS	14414965	14415025	0.99	-	2	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	exon	14414965	14415025	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	intron	14415026	14415151	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	CDS	14415152	14415260	1	-	0	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	exon	14415152	14415260	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	intron	14415261	14415460	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	CDS	14415461	14415682	0.91	-	0	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	exon	14415461	14415682	.	-	.	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
Ledus.S1	AUGUSTUS	start_codon	14415680	14415682	.	-	0	transcript_id "Ledus.S1G148400.t1"; gene_id "Ledus.S1G148400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10517.t1 is derived from g11547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15777177	15777938	.	-	.	Ledus.S3G199400
Ledus.S3	AUGUSTUS	transcript	15777177	15777938	.	-	.	transcript_id "Ledus.S3G199400.t1"; gene_id "Ledus.S3G199400"
Ledus.S3	AUGUSTUS	stop_codon	15777174	15777176	.	-	0	transcript_id "Ledus.S3G199400.t1"; gene_id "Ledus.S3G199400"
Ledus.S3	AUGUSTUS	CDS	15777177	15777234	0.57	-	1	transcript_id "Ledus.S3G199400.t1"; gene_id "Ledus.S3G199400"
Ledus.S3	AUGUSTUS	exon	15777177	15777234	.	-	.	transcript_id "Ledus.S3G199400.t1"; gene_id "Ledus.S3G199400"
Ledus.S3	AUGUSTUS	intron	15777235	15777341	.	-	.	transcript_id "Ledus.S3G199400.t1"; gene_id "Ledus.S3G199400"
Ledus.S3	AUGUSTUS	CDS	15777342	15777640	0.37	-	0	transcript_id "Ledus.S3G199400.t1"; gene_id "Ledus.S3G199400"
Ledus.S3	AUGUSTUS	exon	15777342	15777640	.	-	.	transcript_id "Ledus.S3G199400.t1"; gene_id "Ledus.S3G199400"
Ledus.S3	AUGUSTUS	intron	15777641	15777788	.	-	.	transcript_id "Ledus.S3G199400.t1"; gene_id "Ledus.S3G199400"
Ledus.S3	AUGUSTUS	CDS	15777789	15777938	0.9	-	0	transcript_id "Ledus.S3G199400.t1"; gene_id "Ledus.S3G199400"
Ledus.S3	AUGUSTUS	exon	15777789	15777938	.	-	.	transcript_id "Ledus.S3G199400.t1"; gene_id "Ledus.S3G199400"
Ledus.S3	AUGUSTUS	start_codon	15777936	15777938	.	-	0	transcript_id "Ledus.S3G199400.t1"; gene_id "Ledus.S3G199400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8612.t1 is derived from g9642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	656917	657717	.	+	.	Ledus.S3G008900
Ledus.S3	AUGUSTUS	transcript	656917	657717	.	+	.	transcript_id "Ledus.S3G008900.t1"; gene_id "Ledus.S3G008900"
Ledus.S3	AUGUSTUS	start_codon	656917	656919	.	+	0	transcript_id "Ledus.S3G008900.t1"; gene_id "Ledus.S3G008900"
Ledus.S3	AUGUSTUS	CDS	656917	657717	0.61	+	0	transcript_id "Ledus.S3G008900.t1"; gene_id "Ledus.S3G008900"
Ledus.S3	AUGUSTUS	exon	656917	657717	.	+	.	transcript_id "Ledus.S3G008900.t1"; gene_id "Ledus.S3G008900"
Ledus.S3	AUGUSTUS	stop_codon	657718	657720	.	+	0	transcript_id "Ledus.S3G008900.t1"; gene_id "Ledus.S3G008900"
# This transcript jg2298.t2 is derived from g9161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2299.t1 is derived from g9162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17093085	17095097	.	+	.	Ledus.S2G218100
Ledus.S2	AUGUSTUS	transcript	17093085	17095097	.	+	.	transcript_id "Ledus.S2G218100.t1"; gene_id "Ledus.S2G218100"
Ledus.S2	AUGUSTUS	start_codon	17093085	17093087	.	+	0	transcript_id "Ledus.S2G218100.t1"; gene_id "Ledus.S2G218100"
Ledus.S2	AUGUSTUS	CDS	17093085	17094672	0.23	+	0	transcript_id "Ledus.S2G218100.t1"; gene_id "Ledus.S2G218100"
Ledus.S2	AUGUSTUS	exon	17093085	17094672	.	+	.	transcript_id "Ledus.S2G218100.t1"; gene_id "Ledus.S2G218100"
Ledus.S2	AUGUSTUS	intron	17094673	17094787	.	+	.	transcript_id "Ledus.S2G218100.t1"; gene_id "Ledus.S2G218100"
Ledus.S2	AUGUSTUS	CDS	17094788	17094840	0.48	+	2	transcript_id "Ledus.S2G218100.t1"; gene_id "Ledus.S2G218100"
Ledus.S2	AUGUSTUS	exon	17094788	17094840	.	+	.	transcript_id "Ledus.S2G218100.t1"; gene_id "Ledus.S2G218100"
Ledus.S2	AUGUSTUS	intron	17094841	17094923	.	+	.	transcript_id "Ledus.S2G218100.t1"; gene_id "Ledus.S2G218100"
Ledus.S2	AUGUSTUS	CDS	17094924	17095097	0.63	+	0	transcript_id "Ledus.S2G218100.t1"; gene_id "Ledus.S2G218100"
Ledus.S2	AUGUSTUS	exon	17094924	17095097	.	+	.	transcript_id "Ledus.S2G218100.t1"; gene_id "Ledus.S2G218100"
Ledus.S2	AUGUSTUS	stop_codon	17095098	17095100	.	+	0	transcript_id "Ledus.S2G218100.t1"; gene_id "Ledus.S2G218100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5717.t1 is derived from g3156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26203110	26203307	.	+	.	Ledus.S1G313800
Ledus.S1	AUGUSTUS	transcript	26203110	26203307	.	+	.	transcript_id "Ledus.S1G313800.t1"; gene_id "Ledus.S1G313800"
Ledus.S1	AUGUSTUS	start_codon	26203110	26203112	.	+	0	transcript_id "Ledus.S1G313800.t1"; gene_id "Ledus.S1G313800"
Ledus.S1	AUGUSTUS	CDS	26203110	26203307	0.89	+	0	transcript_id "Ledus.S1G313800.t1"; gene_id "Ledus.S1G313800"
Ledus.S1	AUGUSTUS	exon	26203110	26203307	.	+	.	transcript_id "Ledus.S1G313800.t1"; gene_id "Ledus.S1G313800"
Ledus.S1	AUGUSTUS	stop_codon	26203308	26203310	.	+	0	transcript_id "Ledus.S1G313800.t1"; gene_id "Ledus.S1G313800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12318.t1 is derived from g5939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11191097	11193237	.	+	.	Ledus.S4G147400
Ledus.S4	AUGUSTUS	transcript	11191097	11193237	.	+	.	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	start_codon	11191097	11191099	.	+	0	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	CDS	11191097	11191621	0.64	+	0	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	exon	11191097	11191621	.	+	.	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	intron	11191622	11191761	.	+	.	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	CDS	11191762	11192175	0.85	+	0	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	exon	11191762	11192175	.	+	.	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	intron	11192176	11192289	.	+	.	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	CDS	11192290	11192535	0.98	+	0	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	exon	11192290	11192535	.	+	.	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	intron	11192536	11192635	.	+	.	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	CDS	11192636	11193012	1	+	0	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	exon	11192636	11193012	.	+	.	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	intron	11193013	11193110	.	+	.	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	CDS	11193111	11193237	0.89	+	1	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	exon	11193111	11193237	.	+	.	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
Ledus.S4	AUGUSTUS	stop_codon	11193238	11193240	.	+	0	transcript_id "Ledus.S4G147400.t1"; gene_id "Ledus.S4G147400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg206.t1 is derived from g7067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	881156	883809	.	-	.	Ledus.S2G008800
Ledus.S2	AUGUSTUS	transcript	881156	883809	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	stop_codon	881153	881155	.	-	0	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	CDS	881156	881389	1	-	0	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	exon	881156	881389	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	intron	881390	881599	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	CDS	881600	882139	0.56	-	0	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	exon	881600	882139	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	intron	882140	882322	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	CDS	882323	882574	0.92	-	0	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	exon	882323	882574	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	intron	882575	882726	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	CDS	882727	882876	1	-	0	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	exon	882727	882876	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	intron	882877	883099	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	CDS	883100	883329	0.93	-	2	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	exon	883100	883329	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	intron	883330	883448	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	CDS	883449	883476	0.95	-	0	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	exon	883449	883476	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	intron	883477	883734	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	CDS	883735	883809	0.52	-	0	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	exon	883735	883809	.	-	.	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
Ledus.S2	AUGUSTUS	start_codon	883807	883809	.	-	0	transcript_id "Ledus.S2G008800.t1"; gene_id "Ledus.S2G008800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2855.t1 is derived from g289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4210603	4210998	.	+	.	Ledus.S1G027600
Ledus.S1	AUGUSTUS	transcript	4210603	4210998	.	+	.	transcript_id "Ledus.S1G027600.t1"; gene_id "Ledus.S1G027600"
Ledus.S1	AUGUSTUS	start_codon	4210603	4210605	.	+	0	transcript_id "Ledus.S1G027600.t1"; gene_id "Ledus.S1G027600"
Ledus.S1	AUGUSTUS	CDS	4210603	4210998	0.67	+	0	transcript_id "Ledus.S1G027600.t1"; gene_id "Ledus.S1G027600"
Ledus.S1	AUGUSTUS	exon	4210603	4210998	.	+	.	transcript_id "Ledus.S1G027600.t1"; gene_id "Ledus.S1G027600"
Ledus.S1	AUGUSTUS	stop_codon	4210999	4211001	.	+	0	transcript_id "Ledus.S1G027600.t1"; gene_id "Ledus.S1G027600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11110.t1 is derived from g4728.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1905930	1907810	.	-	.	Ledus.S4G026600
Ledus.S4	AUGUSTUS	transcript	1905930	1907588	.	-	.	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	stop_codon	1905927	1905929	.	-	0	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	CDS	1905930	1907018	1	-	0	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	exon	1905930	1907018	.	-	.	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	intron	1907019	1907111	.	-	.	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	CDS	1907112	1907122	0.71	-	2	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	exon	1907112	1907122	.	-	.	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	intron	1907123	1907220	.	-	.	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	CDS	1907221	1907299	0.6	-	0	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	exon	1907221	1907299	.	-	.	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	intron	1907300	1907522	.	-	.	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	CDS	1907523	1907588	0.92	-	0	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	exon	1907523	1907588	.	-	.	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	start_codon	1907586	1907588	.	-	0	transcript_id "Ledus.S4G026600.t1"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	transcript	1905930	1907810	.	-	.	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	stop_codon	1905927	1905929	.	-	0	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	CDS	1905930	1907018	1	-	0	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	exon	1905930	1907018	.	-	.	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	intron	1907019	1907111	.	-	.	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	CDS	1907112	1907122	0.64	-	2	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	exon	1907112	1907122	.	-	.	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	intron	1907123	1907220	.	-	.	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	CDS	1907221	1907299	0.53	-	0	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	exon	1907221	1907299	.	-	.	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	intron	1907300	1907753	.	-	.	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	CDS	1907754	1907810	0.87	-	0	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	exon	1907754	1907810	.	-	.	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
Ledus.S4	AUGUSTUS	start_codon	1907808	1907810	.	-	0	transcript_id "Ledus.S4G026600.t2"; gene_id "Ledus.S4G026600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3555.t1 is derived from g991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9541268	9542622	.	-	.	Ledus.S1G097600
Ledus.S1	AUGUSTUS	transcript	9541268	9542622	.	-	.	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	stop_codon	9541265	9541267	.	-	0	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	CDS	9541268	9541430	0.98	-	1	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	exon	9541268	9541430	.	-	.	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	intron	9541431	9541524	.	-	.	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	CDS	9541525	9541729	1	-	2	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	exon	9541525	9541729	.	-	.	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	intron	9541730	9542309	.	-	.	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	CDS	9542310	9542414	0.84	-	2	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	exon	9542310	9542414	.	-	.	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	intron	9542415	9542519	.	-	.	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	CDS	9542520	9542622	0.81	-	0	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	exon	9542520	9542622	.	-	.	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
Ledus.S1	AUGUSTUS	start_codon	9542620	9542622	.	-	0	transcript_id "Ledus.S1G097600.t1"; gene_id "Ledus.S1G097600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5540.t1 is derived from g2979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25043511	25045463	.	+	.	Ledus.S1G296100
Ledus.S1	AUGUSTUS	transcript	25043511	25045463	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	start_codon	25043511	25043513	.	+	0	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25043511	25043764	0.97	+	0	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25043511	25043764	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25043765	25043856	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25043857	25043955	1	+	1	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25043857	25043955	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25043956	25044043	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25044044	25044416	1	+	1	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25044044	25044416	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25044417	25044516	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25044517	25044651	1	+	0	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25044517	25044651	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25044652	25044751	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25044752	25044834	1	+	0	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25044752	25044834	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25044835	25044943	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25044944	25045052	1	+	1	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25044944	25045052	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25045053	25045385	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25045386	25045463	0.81	+	0	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25045386	25045463	.	+	.	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	stop_codon	25045464	25045466	.	+	0	transcript_id "Ledus.S1G296100.t1"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	transcript	25043511	25045463	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	start_codon	25043511	25043513	.	+	0	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25043511	25043764	0.93	+	0	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25043511	25043764	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25043765	25043856	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25043857	25043955	1	+	1	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25043857	25043955	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25043956	25044038	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25044039	25044044	0.85	+	1	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25044039	25044044	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25044045	25044139	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25044140	25044416	0.89	+	1	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25044140	25044416	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25044417	25044516	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25044517	25044651	1	+	0	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25044517	25044651	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25044652	25044751	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25044752	25044834	1	+	0	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25044752	25044834	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25044835	25044943	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25044944	25045052	1	+	1	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25044944	25045052	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	intron	25045053	25045385	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	CDS	25045386	25045463	0.87	+	0	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	exon	25045386	25045463	.	+	.	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
Ledus.S1	AUGUSTUS	stop_codon	25045464	25045466	.	+	0	transcript_id "Ledus.S1G296100.t2"; gene_id "Ledus.S1G296100"
# This transcript jg6145.t2 is derived from g3588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6146.t1 is derived from g3589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29272330	29273108	.	-	.	Ledus.S1G356700
Ledus.S1	AUGUSTUS	transcript	29272330	29273108	.	-	.	transcript_id "Ledus.S1G356700.t1"; gene_id "Ledus.S1G356700"
Ledus.S1	AUGUSTUS	stop_codon	29272327	29272329	.	-	0	transcript_id "Ledus.S1G356700.t1"; gene_id "Ledus.S1G356700"
Ledus.S1	AUGUSTUS	CDS	29272330	29272767	0.67	-	0	transcript_id "Ledus.S1G356700.t1"; gene_id "Ledus.S1G356700"
Ledus.S1	AUGUSTUS	exon	29272330	29272767	.	-	.	transcript_id "Ledus.S1G356700.t1"; gene_id "Ledus.S1G356700"
Ledus.S1	AUGUSTUS	intron	29272768	29273021	.	-	.	transcript_id "Ledus.S1G356700.t1"; gene_id "Ledus.S1G356700"
Ledus.S1	AUGUSTUS	CDS	29273022	29273108	0.69	-	0	transcript_id "Ledus.S1G356700.t1"; gene_id "Ledus.S1G356700"
Ledus.S1	AUGUSTUS	exon	29273022	29273108	.	-	.	transcript_id "Ledus.S1G356700.t1"; gene_id "Ledus.S1G356700"
Ledus.S1	AUGUSTUS	start_codon	29273106	29273108	.	-	0	transcript_id "Ledus.S1G356700.t1"; gene_id "Ledus.S1G356700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3308.t1 is derived from g743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7423692	7424674	.	+	.	Ledus.S1G072900
Ledus.S1	AUGUSTUS	transcript	7423692	7424674	.	+	.	transcript_id "Ledus.S1G072900.t1"; gene_id "Ledus.S1G072900"
Ledus.S1	AUGUSTUS	start_codon	7423692	7423694	.	+	0	transcript_id "Ledus.S1G072900.t1"; gene_id "Ledus.S1G072900"
Ledus.S1	AUGUSTUS	CDS	7423692	7423877	1	+	0	transcript_id "Ledus.S1G072900.t1"; gene_id "Ledus.S1G072900"
Ledus.S1	AUGUSTUS	exon	7423692	7423877	.	+	.	transcript_id "Ledus.S1G072900.t1"; gene_id "Ledus.S1G072900"
Ledus.S1	AUGUSTUS	intron	7423878	7423992	.	+	.	transcript_id "Ledus.S1G072900.t1"; gene_id "Ledus.S1G072900"
Ledus.S1	AUGUSTUS	CDS	7423993	7424297	0.92	+	0	transcript_id "Ledus.S1G072900.t1"; gene_id "Ledus.S1G072900"
Ledus.S1	AUGUSTUS	exon	7423993	7424297	.	+	.	transcript_id "Ledus.S1G072900.t1"; gene_id "Ledus.S1G072900"
Ledus.S1	AUGUSTUS	intron	7424298	7424385	.	+	.	transcript_id "Ledus.S1G072900.t1"; gene_id "Ledus.S1G072900"
Ledus.S1	AUGUSTUS	CDS	7424386	7424674	0.78	+	1	transcript_id "Ledus.S1G072900.t1"; gene_id "Ledus.S1G072900"
Ledus.S1	AUGUSTUS	exon	7424386	7424674	.	+	.	transcript_id "Ledus.S1G072900.t1"; gene_id "Ledus.S1G072900"
Ledus.S1	AUGUSTUS	stop_codon	7424675	7424677	.	+	0	transcript_id "Ledus.S1G072900.t1"; gene_id "Ledus.S1G072900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4929.t1 is derived from g2367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20732653	20735143	.	-	.	Ledus.S1G235000
Ledus.S1	AUGUSTUS	transcript	20732653	20735143	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	stop_codon	20732650	20732652	.	-	0	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	CDS	20732653	20733063	0.98	-	0	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	exon	20732653	20733063	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	intron	20733064	20733206	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	CDS	20733207	20733272	1	-	0	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	exon	20733207	20733272	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	intron	20733273	20733348	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	CDS	20733349	20733422	1	-	2	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	exon	20733349	20733422	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	intron	20733423	20733651	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	CDS	20733652	20733766	0.97	-	0	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	exon	20733652	20733766	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	intron	20733767	20733867	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	CDS	20733868	20733918	0.88	-	0	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	exon	20733868	20733918	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	intron	20733919	20733999	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	CDS	20734000	20734059	1	-	0	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	exon	20734000	20734059	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	intron	20734060	20734179	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	CDS	20734180	20734214	1	-	2	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	exon	20734180	20734214	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	intron	20734215	20734322	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	CDS	20734323	20734535	0.99	-	2	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	exon	20734323	20734535	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	intron	20734536	20734644	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	CDS	20734645	20734797	1	-	2	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	exon	20734645	20734797	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	intron	20734798	20734894	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	CDS	20734895	20734945	1	-	2	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	exon	20734895	20734945	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	intron	20734946	20735103	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	CDS	20735104	20735143	0.99	-	0	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	exon	20735104	20735143	.	-	.	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
Ledus.S1	AUGUSTUS	start_codon	20735141	20735143	.	-	0	transcript_id "Ledus.S1G235000.t1"; gene_id "Ledus.S1G235000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9283.t1 is derived from g10313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5769067	5771272	.	-	.	Ledus.S3G076000
Ledus.S3	AUGUSTUS	transcript	5769067	5771272	.	-	.	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	stop_codon	5769064	5769066	.	-	0	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	CDS	5769067	5769106	0.63	-	1	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	exon	5769067	5769106	.	-	.	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	intron	5769107	5769277	.	-	.	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	CDS	5769278	5769313	0.69	-	1	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	exon	5769278	5769313	.	-	.	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	intron	5769314	5769399	.	-	.	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	CDS	5769400	5769451	0.94	-	2	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	exon	5769400	5769451	.	-	.	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	intron	5769452	5769701	.	-	.	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	CDS	5769702	5769952	0.65	-	1	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	exon	5769702	5769952	.	-	.	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	intron	5769953	5770043	.	-	.	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	CDS	5770044	5771272	0.45	-	0	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	exon	5770044	5771272	.	-	.	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
Ledus.S3	AUGUSTUS	start_codon	5771270	5771272	.	-	0	transcript_id "Ledus.S3G076000.t1"; gene_id "Ledus.S3G076000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11896.t1 is derived from g5515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7576903	7577676	.	+	.	Ledus.S4G105200
Ledus.S4	AUGUSTUS	transcript	7576903	7577676	.	+	.	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	start_codon	7576903	7576905	.	+	0	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	CDS	7576903	7576957	0.76	+	0	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	exon	7576903	7576957	.	+	.	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	intron	7576958	7577234	.	+	.	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	CDS	7577235	7577304	0.99	+	2	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	exon	7577235	7577304	.	+	.	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	intron	7577305	7577380	.	+	.	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	CDS	7577381	7577434	0.97	+	1	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	exon	7577381	7577434	.	+	.	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	intron	7577435	7577651	.	+	.	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	CDS	7577652	7577676	0.95	+	1	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	exon	7577652	7577676	.	+	.	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
Ledus.S4	AUGUSTUS	stop_codon	7577677	7577679	.	+	0	transcript_id "Ledus.S4G105200.t1"; gene_id "Ledus.S4G105200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2142.t1 is derived from g9005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15120854	15121081	.	-	.	Ledus.S2G202400
Ledus.S2	AUGUSTUS	transcript	15120854	15121081	.	-	.	transcript_id "Ledus.S2G202400.t1"; gene_id "Ledus.S2G202400"
Ledus.S2	AUGUSTUS	stop_codon	15120851	15120853	.	-	0	transcript_id "Ledus.S2G202400.t1"; gene_id "Ledus.S2G202400"
Ledus.S2	AUGUSTUS	CDS	15120854	15121081	0.98	-	0	transcript_id "Ledus.S2G202400.t1"; gene_id "Ledus.S2G202400"
Ledus.S2	AUGUSTUS	exon	15120854	15121081	.	-	.	transcript_id "Ledus.S2G202400.t1"; gene_id "Ledus.S2G202400"
Ledus.S2	AUGUSTUS	start_codon	15121079	15121081	.	-	0	transcript_id "Ledus.S2G202400.t1"; gene_id "Ledus.S2G202400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg18.t1 is derived from g9541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C20	AUGUSTUS	gene	66945	68443	.	-	.	Ledus.C20G000400
Ledus.C20	AUGUSTUS	transcript	66945	68443	.	-	.	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	stop_codon	66942	66944	.	-	0	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	CDS	66945	66993	0.44	-	1	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	exon	66945	66993	.	-	.	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	intron	66994	67091	.	-	.	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	CDS	67092	67430	0.48	-	1	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	exon	67092	67430	.	-	.	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	intron	67431	67635	.	-	.	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	CDS	67636	67688	0.59	-	0	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	exon	67636	67688	.	-	.	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	intron	67689	67812	.	-	.	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	CDS	67813	67943	0.74	-	2	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	exon	67813	67943	.	-	.	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	intron	67944	68113	.	-	.	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	CDS	68114	68147	0.81	-	0	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	exon	68114	68147	.	-	.	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	intron	68148	68347	.	-	.	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	CDS	68348	68443	0.61	-	0	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	exon	68348	68443	.	-	.	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
Ledus.C20	AUGUSTUS	start_codon	68441	68443	.	-	0	transcript_id "Ledus.C20G000400.t1"; gene_id "Ledus.C20G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4018.t1 is derived from g1454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14097129	14098119	.	+	.	Ledus.S1G143900
Ledus.S1	AUGUSTUS	transcript	14097129	14098119	.	+	.	transcript_id "Ledus.S1G143900.t1"; gene_id "Ledus.S1G143900"
Ledus.S1	AUGUSTUS	start_codon	14097129	14097131	.	+	0	transcript_id "Ledus.S1G143900.t1"; gene_id "Ledus.S1G143900"
Ledus.S1	AUGUSTUS	CDS	14097129	14097437	1	+	0	transcript_id "Ledus.S1G143900.t1"; gene_id "Ledus.S1G143900"
Ledus.S1	AUGUSTUS	exon	14097129	14097437	.	+	.	transcript_id "Ledus.S1G143900.t1"; gene_id "Ledus.S1G143900"
Ledus.S1	AUGUSTUS	intron	14097438	14097606	.	+	.	transcript_id "Ledus.S1G143900.t1"; gene_id "Ledus.S1G143900"
Ledus.S1	AUGUSTUS	CDS	14097607	14097714	1	+	0	transcript_id "Ledus.S1G143900.t1"; gene_id "Ledus.S1G143900"
Ledus.S1	AUGUSTUS	exon	14097607	14097714	.	+	.	transcript_id "Ledus.S1G143900.t1"; gene_id "Ledus.S1G143900"
Ledus.S1	AUGUSTUS	intron	14097715	14097810	.	+	.	transcript_id "Ledus.S1G143900.t1"; gene_id "Ledus.S1G143900"
Ledus.S1	AUGUSTUS	CDS	14097811	14098119	0.95	+	0	transcript_id "Ledus.S1G143900.t1"; gene_id "Ledus.S1G143900"
Ledus.S1	AUGUSTUS	exon	14097811	14098119	.	+	.	transcript_id "Ledus.S1G143900.t1"; gene_id "Ledus.S1G143900"
Ledus.S1	AUGUSTUS	stop_codon	14098120	14098122	.	+	0	transcript_id "Ledus.S1G143900.t1"; gene_id "Ledus.S1G143900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5600.t1 is derived from g3039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25321399	25324553	.	-	.	Ledus.S1G302100
Ledus.S1	AUGUSTUS	transcript	25321399	25324553	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	stop_codon	25321396	25321398	.	-	0	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25321399	25321512	1	-	0	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25321399	25321512	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25321513	25321598	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25321599	25321678	1	-	2	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25321599	25321678	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25321679	25321885	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25321886	25321937	1	-	0	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25321886	25321937	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25321938	25322052	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25322053	25322124	1	-	0	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25322053	25322124	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25322125	25322203	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25322204	25322371	1	-	0	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25322204	25322371	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25322372	25322453	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25322454	25322564	0.99	-	0	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25322454	25322564	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25322565	25322674	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25322675	25322844	0.99	-	2	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25322675	25322844	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25322845	25322937	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25322938	25323011	1	-	1	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25322938	25323011	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25323012	25323099	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25323100	25323248	1	-	0	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25323100	25323248	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25323249	25323369	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25323370	25323487	0.98	-	1	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25323370	25323487	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25323488	25323562	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25323563	25323681	1	-	0	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25323563	25323681	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25323682	25323766	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25323767	25323828	1	-	2	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25323767	25323828	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25323829	25323909	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25323910	25324028	1	-	1	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25323910	25324028	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25324029	25324122	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25324123	25324358	1	-	0	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25324123	25324358	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	intron	25324359	25324427	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	CDS	25324428	25324553	0.96	-	0	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	exon	25324428	25324553	.	-	.	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
Ledus.S1	AUGUSTUS	start_codon	25324551	25324553	.	-	0	transcript_id "Ledus.S1G302100.t1"; gene_id "Ledus.S1G302100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7091.t1 is derived from g6622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1506279	1510023	.	+	.	Ledus.C7G015200
Ledus.C7	AUGUSTUS	transcript	1506279	1510023	.	+	.	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	start_codon	1506279	1506281	.	+	0	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	CDS	1506279	1508382	0.89	+	0	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	exon	1506279	1508382	.	+	.	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	intron	1508383	1508474	.	+	.	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	CDS	1508475	1509291	1	+	2	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	exon	1508475	1509291	.	+	.	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	intron	1509292	1509418	.	+	.	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	CDS	1509419	1509712	1	+	1	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	exon	1509419	1509712	.	+	.	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	intron	1509713	1509803	.	+	.	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	CDS	1509804	1510023	1	+	1	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	exon	1509804	1510023	.	+	.	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
Ledus.C7	AUGUSTUS	stop_codon	1510024	1510026	.	+	0	transcript_id "Ledus.C7G015200.t1"; gene_id "Ledus.C7G015200"
# This transcript jg1129.t2 is derived from g7990.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1130.t1 is derived from g7991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7849836	7851384	.	+	.	Ledus.S2G101200
Ledus.S2	AUGUSTUS	transcript	7849836	7851384	.	+	.	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	start_codon	7849836	7849838	.	+	0	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	CDS	7849836	7850090	1	+	0	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	exon	7849836	7850090	.	+	.	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	intron	7850091	7850233	.	+	.	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	CDS	7850234	7850413	1	+	0	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	exon	7850234	7850413	.	+	.	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	intron	7850414	7850513	.	+	.	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	CDS	7850514	7850595	1	+	0	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	exon	7850514	7850595	.	+	.	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	intron	7850596	7850682	.	+	.	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	CDS	7850683	7850790	1	+	2	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	exon	7850683	7850790	.	+	.	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	intron	7850791	7850921	.	+	.	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	CDS	7850922	7851080	1	+	2	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	exon	7850922	7851080	.	+	.	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	intron	7851081	7851181	.	+	.	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	CDS	7851182	7851384	0.88	+	2	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	exon	7851182	7851384	.	+	.	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
Ledus.S2	AUGUSTUS	stop_codon	7851385	7851387	.	+	0	transcript_id "Ledus.S2G101200.t1"; gene_id "Ledus.S2G101200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10318.t1 is derived from g11348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14215594	14218832	.	-	.	Ledus.S3G179500
Ledus.S3	AUGUSTUS	transcript	14215594	14218832	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	stop_codon	14215591	14215593	.	-	0	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	CDS	14215594	14215740	1	-	0	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	exon	14215594	14215740	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	intron	14215741	14215819	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	CDS	14215820	14215948	1	-	0	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	exon	14215820	14215948	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	intron	14215949	14216035	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	CDS	14216036	14216244	1	-	2	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	exon	14216036	14216244	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	intron	14216245	14216324	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	CDS	14216325	14217457	1	-	1	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	exon	14216325	14217457	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	intron	14217458	14217559	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	CDS	14217560	14217686	0.99	-	2	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	exon	14217560	14217686	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	intron	14217687	14217778	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	CDS	14217779	14217936	1	-	1	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	exon	14217779	14217936	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	intron	14217937	14218021	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	CDS	14218022	14218473	0.99	-	0	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	exon	14218022	14218473	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	intron	14218474	14218565	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	CDS	14218566	14218832	0.68	-	0	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	exon	14218566	14218832	.	-	.	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
Ledus.S3	AUGUSTUS	start_codon	14218830	14218832	.	-	0	transcript_id "Ledus.S3G179500.t1"; gene_id "Ledus.S3G179500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8514.t1 is derived from g13186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12404854	12405606	.	-	.	Ledus.S5G129200
Ledus.S5	AUGUSTUS	transcript	12404854	12405606	.	-	.	transcript_id "Ledus.S5G129200.t1"; gene_id "Ledus.S5G129200"
Ledus.S5	AUGUSTUS	stop_codon	12404851	12404853	.	-	0	transcript_id "Ledus.S5G129200.t1"; gene_id "Ledus.S5G129200"
Ledus.S5	AUGUSTUS	CDS	12404854	12405053	0.96	-	2	transcript_id "Ledus.S5G129200.t1"; gene_id "Ledus.S5G129200"
Ledus.S5	AUGUSTUS	exon	12404854	12405053	.	-	.	transcript_id "Ledus.S5G129200.t1"; gene_id "Ledus.S5G129200"
Ledus.S5	AUGUSTUS	intron	12405054	12405260	.	-	.	transcript_id "Ledus.S5G129200.t1"; gene_id "Ledus.S5G129200"
Ledus.S5	AUGUSTUS	CDS	12405261	12405606	0.82	-	0	transcript_id "Ledus.S5G129200.t1"; gene_id "Ledus.S5G129200"
Ledus.S5	AUGUSTUS	exon	12405261	12405606	.	-	.	transcript_id "Ledus.S5G129200.t1"; gene_id "Ledus.S5G129200"
Ledus.S5	AUGUSTUS	start_codon	12405604	12405606	.	-	0	transcript_id "Ledus.S5G129200.t1"; gene_id "Ledus.S5G129200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2956.t1 is derived from g391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4896634	4897383	.	-	.	Ledus.S1G037700
Ledus.S1	AUGUSTUS	transcript	4896634	4897383	.	-	.	transcript_id "Ledus.S1G037700.t1"; gene_id "Ledus.S1G037700"
Ledus.S1	AUGUSTUS	stop_codon	4896631	4896633	.	-	0	transcript_id "Ledus.S1G037700.t1"; gene_id "Ledus.S1G037700"
Ledus.S1	AUGUSTUS	CDS	4896634	4897383	0.82	-	0	transcript_id "Ledus.S1G037700.t1"; gene_id "Ledus.S1G037700"
Ledus.S1	AUGUSTUS	exon	4896634	4897383	.	-	.	transcript_id "Ledus.S1G037700.t1"; gene_id "Ledus.S1G037700"
Ledus.S1	AUGUSTUS	start_codon	4897381	4897383	.	-	0	transcript_id "Ledus.S1G037700.t1"; gene_id "Ledus.S1G037700"
# This transcript jg10453.t2 is derived from g11483.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10453.t3 is derived from g11483.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10454.t1 is derived from g11484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15256482	15259331	.	+	.	Ledus.S3G193100
Ledus.S3	AUGUSTUS	transcript	15256482	15259331	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	start_codon	15256482	15256484	.	+	0	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	CDS	15256482	15256704	0.77	+	0	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	exon	15256482	15256704	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	intron	15256705	15256787	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	CDS	15256788	15256878	1	+	2	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	exon	15256788	15256878	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	intron	15256879	15256945	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	CDS	15256946	15257143	1	+	1	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	exon	15256946	15257143	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	intron	15257144	15257236	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	CDS	15257237	15257474	1	+	1	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	exon	15257237	15257474	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	intron	15257475	15257570	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	CDS	15257571	15257898	0.93	+	0	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	exon	15257571	15257898	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	intron	15257899	15257993	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	CDS	15257994	15258243	1	+	2	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	exon	15257994	15258243	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	intron	15258244	15258318	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	CDS	15258319	15259046	0.9	+	1	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	exon	15258319	15259046	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	intron	15259047	15259182	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	CDS	15259183	15259331	0.74	+	2	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	exon	15259183	15259331	.	+	.	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
Ledus.S3	AUGUSTUS	stop_codon	15259332	15259334	.	+	0	transcript_id "Ledus.S3G193100.t1"; gene_id "Ledus.S3G193100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7161.t1 is derived from g6692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1913535	1914789	.	-	.	Ledus.C7G022200
Ledus.C7	AUGUSTUS	transcript	1913535	1914789	.	-	.	transcript_id "Ledus.C7G022200.t1"; gene_id "Ledus.C7G022200"
Ledus.C7	AUGUSTUS	stop_codon	1913532	1913534	.	-	0	transcript_id "Ledus.C7G022200.t1"; gene_id "Ledus.C7G022200"
Ledus.C7	AUGUSTUS	CDS	1913535	1914415	0.33	-	2	transcript_id "Ledus.C7G022200.t1"; gene_id "Ledus.C7G022200"
Ledus.C7	AUGUSTUS	exon	1913535	1914415	.	-	.	transcript_id "Ledus.C7G022200.t1"; gene_id "Ledus.C7G022200"
Ledus.C7	AUGUSTUS	intron	1914416	1914584	.	-	.	transcript_id "Ledus.C7G022200.t1"; gene_id "Ledus.C7G022200"
Ledus.C7	AUGUSTUS	CDS	1914585	1914789	0.41	-	0	transcript_id "Ledus.C7G022200.t1"; gene_id "Ledus.C7G022200"
Ledus.C7	AUGUSTUS	exon	1914585	1914789	.	-	.	transcript_id "Ledus.C7G022200.t1"; gene_id "Ledus.C7G022200"
Ledus.C7	AUGUSTUS	start_codon	1914787	1914789	.	-	0	transcript_id "Ledus.C7G022200.t1"; gene_id "Ledus.C7G022200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3344.t1 is derived from g779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7612470	7612989	.	-	.	Ledus.S1G076500
Ledus.S1	AUGUSTUS	transcript	7612470	7612989	.	-	.	transcript_id "Ledus.S1G076500.t1"; gene_id "Ledus.S1G076500"
Ledus.S1	AUGUSTUS	stop_codon	7612467	7612469	.	-	0	transcript_id "Ledus.S1G076500.t1"; gene_id "Ledus.S1G076500"
Ledus.S1	AUGUSTUS	CDS	7612470	7612478	0.94	-	0	transcript_id "Ledus.S1G076500.t1"; gene_id "Ledus.S1G076500"
Ledus.S1	AUGUSTUS	exon	7612470	7612478	.	-	.	transcript_id "Ledus.S1G076500.t1"; gene_id "Ledus.S1G076500"
Ledus.S1	AUGUSTUS	intron	7612479	7612749	.	-	.	transcript_id "Ledus.S1G076500.t1"; gene_id "Ledus.S1G076500"
Ledus.S1	AUGUSTUS	CDS	7612750	7612989	0.52	-	0	transcript_id "Ledus.S1G076500.t1"; gene_id "Ledus.S1G076500"
Ledus.S1	AUGUSTUS	exon	7612750	7612989	.	-	.	transcript_id "Ledus.S1G076500.t1"; gene_id "Ledus.S1G076500"
Ledus.S1	AUGUSTUS	start_codon	7612987	7612989	.	-	0	transcript_id "Ledus.S1G076500.t1"; gene_id "Ledus.S1G076500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13007.t1 is derived from g6817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2643849	2644085	.	+	.	Ledus.S6G006900
Ledus.S6	AUGUSTUS	transcript	2643849	2644085	.	+	.	transcript_id "Ledus.S6G006900.t1"; gene_id "Ledus.S6G006900"
Ledus.S6	AUGUSTUS	start_codon	2643849	2643851	.	+	0	transcript_id "Ledus.S6G006900.t1"; gene_id "Ledus.S6G006900"
Ledus.S6	AUGUSTUS	CDS	2643849	2644085	0.53	+	0	transcript_id "Ledus.S6G006900.t1"; gene_id "Ledus.S6G006900"
Ledus.S6	AUGUSTUS	exon	2643849	2644085	.	+	.	transcript_id "Ledus.S6G006900.t1"; gene_id "Ledus.S6G006900"
Ledus.S6	AUGUSTUS	stop_codon	2644086	2644088	.	+	0	transcript_id "Ledus.S6G006900.t1"; gene_id "Ledus.S6G006900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12889.t1 is derived from g4462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	387049	387351	.	+	.	Ledus.C10G003200
Ledus.C10	AUGUSTUS	transcript	387049	387351	.	+	.	transcript_id "Ledus.C10G003200.t1"; gene_id "Ledus.C10G003200"
Ledus.C10	AUGUSTUS	start_codon	387049	387051	.	+	0	transcript_id "Ledus.C10G003200.t1"; gene_id "Ledus.C10G003200"
Ledus.C10	AUGUSTUS	CDS	387049	387351	0.63	+	0	transcript_id "Ledus.C10G003200.t1"; gene_id "Ledus.C10G003200"
Ledus.C10	AUGUSTUS	exon	387049	387351	.	+	.	transcript_id "Ledus.C10G003200.t1"; gene_id "Ledus.C10G003200"
Ledus.C10	AUGUSTUS	stop_codon	387352	387354	.	+	0	transcript_id "Ledus.C10G003200.t1"; gene_id "Ledus.C10G003200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8447.t1 is derived from g13119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11734963	11736998	.	-	.	Ledus.S5G122500
Ledus.S5	AUGUSTUS	transcript	11734963	11736998	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	stop_codon	11734960	11734962	.	-	0	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	CDS	11734963	11735229	0.9	-	0	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	exon	11734963	11735229	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	intron	11735230	11735327	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	CDS	11735328	11735471	1	-	0	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	exon	11735328	11735471	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	intron	11735472	11735563	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	CDS	11735564	11735837	0.9	-	1	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	exon	11735564	11735837	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	intron	11735838	11736224	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	CDS	11736225	11736305	0.53	-	1	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	exon	11736225	11736305	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	intron	11736306	11736385	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	CDS	11736386	11736494	0.96	-	2	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	exon	11736386	11736494	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	intron	11736495	11736615	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	CDS	11736616	11736762	0.99	-	2	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	exon	11736616	11736762	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	intron	11736763	11736856	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	CDS	11736857	11736998	0.91	-	0	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	exon	11736857	11736998	.	-	.	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
Ledus.S5	AUGUSTUS	start_codon	11736996	11736998	.	-	0	transcript_id "Ledus.S5G122500.t1"; gene_id "Ledus.S5G122500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7251.t1 is derived from g11922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	455796	462766	.	+	.	Ledus.S5G002900
Ledus.S5	AUGUSTUS	transcript	455796	462766	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	start_codon	455796	455798	.	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	455796	455962	1	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	455796	455962	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	455963	456136	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	456137	456320	1	+	1	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	456137	456320	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	456321	456404	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	456405	456503	0.98	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	456405	456503	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	456504	456607	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	456608	456808	1	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	456608	456808	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	456809	456900	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	456901	457246	1	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	456901	457246	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	457247	457386	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	457387	457526	1	+	2	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	457387	457526	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	457527	457685	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	457686	457761	1	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	457686	457761	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	457762	457850	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	457851	457886	1	+	2	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	457851	457886	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	457887	458021	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	458022	458054	0.99	+	2	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	458022	458054	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	458055	458624	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	458625	458749	0.83	+	2	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	458625	458749	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	458750	458824	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	458825	458979	1	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	458825	458979	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	458980	459104	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	459105	459229	1	+	1	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	459105	459229	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	459230	459317	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	459318	459572	0.86	+	2	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	459318	459572	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	459573	459654	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	459655	460389	1	+	2	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	459655	460389	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	460390	460491	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	460492	460592	0.99	+	2	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	460492	460592	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	460593	460715	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	460716	461360	0.95	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	460716	461360	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	461361	461474	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	461475	461575	1	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	461475	461575	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	461576	461698	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	461699	461837	0.99	+	1	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	461699	461837	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	461838	461938	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	461939	462094	0.83	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	461939	462094	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	462095	462181	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	462182	462342	0.91	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	462182	462342	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	462343	462426	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	462427	462538	1	+	1	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	462427	462538	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	intron	462539	462622	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	CDS	462623	462766	0.8	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	exon	462623	462766	.	+	.	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
Ledus.S5	AUGUSTUS	stop_codon	462767	462769	.	+	0	transcript_id "Ledus.S5G002900.t1"; gene_id "Ledus.S5G002900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1223.t1 is derived from g8084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8724070	8734399	.	+	.	Ledus.S2G110500
Ledus.S2	AUGUSTUS	transcript	8724070	8734399	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	start_codon	8724070	8724072	.	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8724070	8725592	0.86	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8724070	8725592	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8725593	8725724	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8725725	8725782	1	+	1	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8725725	8725782	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8725783	8725946	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8725947	8726069	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8725947	8726069	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8726070	8726154	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8726155	8726212	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8726155	8726212	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8726213	8726295	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8726296	8726432	1	+	2	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8726296	8726432	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8726433	8726533	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8726534	8726692	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8726534	8726692	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8726693	8726814	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8726815	8726901	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8726815	8726901	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8726902	8726976	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8726977	8727180	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8726977	8727180	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8727181	8727319	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8727320	8727472	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8727320	8727472	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8727473	8727570	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8727571	8727762	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8727571	8727762	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8727763	8727847	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8727848	8727919	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8727848	8727919	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8727920	8728037	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8728038	8728133	0.99	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8728038	8728133	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8728134	8728873	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8728874	8728981	0.91	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8728874	8728981	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8728982	8729084	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8729085	8729201	0.53	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8729085	8729201	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8729202	8729329	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8729330	8729537	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8729330	8729537	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8729538	8729679	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8729680	8729747	1	+	2	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8729680	8729747	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8729748	8729914	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8729915	8729973	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8729915	8729973	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8729974	8730139	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8730140	8730271	0.99	+	1	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8730140	8730271	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8730272	8730378	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8730379	8730541	1	+	1	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8730379	8730541	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8730542	8730641	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8730642	8730965	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8730642	8730965	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8730966	8731152	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8731153	8731338	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8731153	8731338	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8731339	8731441	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8731442	8731515	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8731442	8731515	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8731516	8731666	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8731667	8731745	1	+	1	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8731667	8731745	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8731746	8731938	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8731939	8732091	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8731939	8732091	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8732092	8732210	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8732211	8732350	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8732211	8732350	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8732351	8732434	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8732435	8732558	1	+	1	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8732435	8732558	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8732559	8732648	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8732649	8732716	0.67	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8732649	8732716	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8732717	8732825	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8732826	8732970	1	+	1	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8732826	8732970	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8732971	8733118	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8733119	8733265	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8733119	8733265	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8733266	8733345	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8733346	8733441	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8733346	8733441	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8733442	8733515	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8733516	8733644	0.62	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8733516	8733644	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8733645	8733790	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8733791	8734038	1	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8733791	8734038	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	intron	8734039	8734125	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	CDS	8734126	8734399	0.96	+	1	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	exon	8734126	8734399	.	+	.	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
Ledus.S2	AUGUSTUS	stop_codon	8734400	8734402	.	+	0	transcript_id "Ledus.S2G110500.t1"; gene_id "Ledus.S2G110500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4429.t1 is derived from g1865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17068265	17072655	.	+	.	Ledus.S1G185000
Ledus.S1	AUGUSTUS	transcript	17068265	17072655	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	start_codon	17068265	17068267	.	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17068265	17068501	0.88	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17068265	17068501	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17068502	17068595	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17068596	17068775	1	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17068596	17068775	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17068776	17068881	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17068882	17069058	1	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17068882	17069058	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17069059	17069161	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17069162	17069247	1	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17069162	17069247	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17069248	17069403	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17069404	17069593	1	+	1	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17069404	17069593	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17069594	17069775	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17069776	17069868	0.97	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17069776	17069868	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17069869	17069976	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17069977	17070161	1	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17069977	17070161	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17070162	17070335	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17070336	17070453	1	+	1	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17070336	17070453	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17070454	17070589	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17070590	17070721	1	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17070590	17070721	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17070722	17070804	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17070805	17071023	0.99	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17070805	17071023	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17071024	17071133	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17071134	17071337	1	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17071134	17071337	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17071338	17071535	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17071536	17071694	1	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17071536	17071694	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17071695	17071807	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17071808	17072071	0.59	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17071808	17072071	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17072072	17072186	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17072187	17072377	1	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17072187	17072377	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	intron	17072378	17072531	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	CDS	17072532	17072655	1	+	1	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	exon	17072532	17072655	.	+	.	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
Ledus.S1	AUGUSTUS	stop_codon	17072656	17072658	.	+	0	transcript_id "Ledus.S1G185000.t1"; gene_id "Ledus.S1G185000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9081.t1 is derived from g10111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4431101	4432968	.	+	.	Ledus.S3G055800
Ledus.S3	AUGUSTUS	transcript	4431101	4432968	.	+	.	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	start_codon	4431101	4431103	.	+	0	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	CDS	4431101	4431392	0.93	+	0	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	exon	4431101	4431392	.	+	.	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	intron	4431393	4431479	.	+	.	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	CDS	4431480	4431794	1	+	2	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	exon	4431480	4431794	.	+	.	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	intron	4431795	4431887	.	+	.	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	CDS	4431888	4432183	1	+	2	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	exon	4431888	4432183	.	+	.	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	intron	4432184	4432277	.	+	.	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	CDS	4432278	4432503	1	+	0	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	exon	4432278	4432503	.	+	.	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	intron	4432504	4432591	.	+	.	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	CDS	4432592	4432968	0.93	+	2	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	exon	4432592	4432968	.	+	.	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
Ledus.S3	AUGUSTUS	stop_codon	4432969	4432971	.	+	0	transcript_id "Ledus.S3G055800.t1"; gene_id "Ledus.S3G055800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12486.t1 is derived from g6107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12332899	12333192	.	-	.	Ledus.S4G164200
Ledus.S4	AUGUSTUS	transcript	12332899	12333192	.	-	.	transcript_id "Ledus.S4G164200.t1"; gene_id "Ledus.S4G164200"
Ledus.S4	AUGUSTUS	stop_codon	12332896	12332898	.	-	0	transcript_id "Ledus.S4G164200.t1"; gene_id "Ledus.S4G164200"
Ledus.S4	AUGUSTUS	CDS	12332899	12333192	0.69	-	0	transcript_id "Ledus.S4G164200.t1"; gene_id "Ledus.S4G164200"
Ledus.S4	AUGUSTUS	exon	12332899	12333192	.	-	.	transcript_id "Ledus.S4G164200.t1"; gene_id "Ledus.S4G164200"
Ledus.S4	AUGUSTUS	start_codon	12333190	12333192	.	-	0	transcript_id "Ledus.S4G164200.t1"; gene_id "Ledus.S4G164200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg674.t1 is derived from g7535.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4038870	4043543	.	-	.	Ledus.S2G055600
Ledus.S2	AUGUSTUS	transcript	4038870	4042437	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	stop_codon	4038867	4038869	.	-	0	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4038870	4038937	0.36	-	2	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4038870	4038937	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4038938	4039051	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4039052	4039251	0.81	-	1	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4039052	4039251	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4039252	4039389	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4039390	4039486	1	-	2	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4039390	4039486	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4039487	4039610	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4039611	4039659	1	-	0	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4039611	4039659	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4039660	4039861	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4039862	4039954	1	-	0	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4039862	4039954	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4039955	4040090	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4040091	4040322	1	-	1	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4040091	4040322	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4040323	4040405	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4040406	4040511	1	-	2	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4040406	4040511	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4040512	4040642	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4040643	4040734	1	-	1	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4040643	4040734	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4040735	4040820	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4040821	4040929	1	-	2	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4040821	4040929	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4040930	4041049	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4041050	4041149	1	-	0	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4041050	4041149	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4041150	4041241	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4041242	4041382	1	-	0	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4041242	4041382	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4041383	4041589	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4041590	4041754	1	-	0	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4041590	4041754	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4041755	4041838	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4041839	4042012	1	-	0	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4041839	4042012	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4042013	4042110	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4042111	4042437	0.77	-	0	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4042111	4042437	.	-	.	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	start_codon	4042435	4042437	.	-	0	transcript_id "Ledus.S2G055600.t1"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	transcript	4038870	4043543	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	stop_codon	4038867	4038869	.	-	0	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4038870	4038937	0.36	-	2	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4038870	4038937	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4038938	4039051	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4039052	4039251	0.7	-	1	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4039052	4039251	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4039252	4039389	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4039390	4039486	1	-	2	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4039390	4039486	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4039487	4039610	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4039611	4039659	1	-	0	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4039611	4039659	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4039660	4039861	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4039862	4039954	1	-	0	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4039862	4039954	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4039955	4040090	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4040091	4040322	1	-	1	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4040091	4040322	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4040323	4040405	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4040406	4040511	1	-	2	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4040406	4040511	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4040512	4040642	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4040643	4040734	1	-	1	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4040643	4040734	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4040735	4040820	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4040821	4040929	1	-	2	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4040821	4040929	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4040930	4041049	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4041050	4041149	1	-	0	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4041050	4041149	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4041150	4041241	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4041242	4041382	1	-	0	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4041242	4041382	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4041383	4041589	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4041590	4041754	1	-	0	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4041590	4041754	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4041755	4041838	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4041839	4042012	1	-	0	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4041839	4042012	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4042013	4042110	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4042111	4042239	0.54	-	0	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4042111	4042239	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4042240	4042344	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4042345	4042460	0.54	-	2	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4042345	4042460	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4042461	4042576	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4042577	4042721	0.9	-	0	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4042577	4042721	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4042722	4042829	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4042830	4042893	0.98	-	1	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4042830	4042893	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4042894	4043037	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4043038	4043543	0.37	-	0	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4043038	4043543	.	-	.	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	start_codon	4043541	4043543	.	-	0	transcript_id "Ledus.S2G055600.t2"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	transcript	4042491	4043543	.	-	.	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	stop_codon	4042488	4042490	.	-	0	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4042491	4042492	0.9	-	2	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4042491	4042492	.	-	.	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4042493	4042576	.	-	.	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4042577	4042721	0.94	-	0	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4042577	4042721	.	-	.	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4042722	4042829	.	-	.	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4042830	4042893	0.98	-	1	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4042830	4042893	.	-	.	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	intron	4042894	4043037	.	-	.	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	CDS	4043038	4043543	0.46	-	0	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	exon	4043038	4043543	.	-	.	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
Ledus.S2	AUGUSTUS	start_codon	4043541	4043543	.	-	0	transcript_id "Ledus.S2G055600.t3"; gene_id "Ledus.S2G055600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2172.t1 is derived from g9035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15722049	15722743	.	-	.	Ledus.S2G205400
Ledus.S2	AUGUSTUS	transcript	15722049	15722743	.	-	.	transcript_id "Ledus.S2G205400.t1"; gene_id "Ledus.S2G205400"
Ledus.S2	AUGUSTUS	stop_codon	15722046	15722048	.	-	0	transcript_id "Ledus.S2G205400.t1"; gene_id "Ledus.S2G205400"
Ledus.S2	AUGUSTUS	CDS	15722049	15722624	0.93	-	0	transcript_id "Ledus.S2G205400.t1"; gene_id "Ledus.S2G205400"
Ledus.S2	AUGUSTUS	exon	15722049	15722624	.	-	.	transcript_id "Ledus.S2G205400.t1"; gene_id "Ledus.S2G205400"
Ledus.S2	AUGUSTUS	intron	15722625	15722707	.	-	.	transcript_id "Ledus.S2G205400.t1"; gene_id "Ledus.S2G205400"
Ledus.S2	AUGUSTUS	CDS	15722708	15722743	0.67	-	0	transcript_id "Ledus.S2G205400.t1"; gene_id "Ledus.S2G205400"
Ledus.S2	AUGUSTUS	exon	15722708	15722743	.	-	.	transcript_id "Ledus.S2G205400.t1"; gene_id "Ledus.S2G205400"
Ledus.S2	AUGUSTUS	start_codon	15722741	15722743	.	-	0	transcript_id "Ledus.S2G205400.t1"; gene_id "Ledus.S2G205400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8362.t1 is derived from g13034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11091980	11093118	.	-	.	Ledus.S5G114000
Ledus.S5	AUGUSTUS	transcript	11091980	11093118	.	-	.	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	stop_codon	11091977	11091979	.	-	0	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	CDS	11091980	11092343	1	-	1	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	exon	11091980	11092343	.	-	.	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	intron	11092344	11092423	.	-	.	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	CDS	11092424	11092577	1	-	2	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	exon	11092424	11092577	.	-	.	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	intron	11092578	11092670	.	-	.	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	CDS	11092671	11092799	1	-	2	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	exon	11092671	11092799	.	-	.	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	intron	11092800	11092943	.	-	.	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	CDS	11092944	11093118	0.62	-	0	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	exon	11092944	11093118	.	-	.	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
Ledus.S5	AUGUSTUS	start_codon	11093116	11093118	.	-	0	transcript_id "Ledus.S5G114000.t1"; gene_id "Ledus.S5G114000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8291.t1 is derived from g12962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10513861	10514130	.	+	.	Ledus.S5G106900
Ledus.S5	AUGUSTUS	transcript	10513861	10514130	.	+	.	transcript_id "Ledus.S5G106900.t1"; gene_id "Ledus.S5G106900"
Ledus.S5	AUGUSTUS	start_codon	10513861	10513863	.	+	0	transcript_id "Ledus.S5G106900.t1"; gene_id "Ledus.S5G106900"
Ledus.S5	AUGUSTUS	CDS	10513861	10514130	1	+	0	transcript_id "Ledus.S5G106900.t1"; gene_id "Ledus.S5G106900"
Ledus.S5	AUGUSTUS	exon	10513861	10514130	.	+	.	transcript_id "Ledus.S5G106900.t1"; gene_id "Ledus.S5G106900"
Ledus.S5	AUGUSTUS	stop_codon	10514131	10514133	.	+	0	transcript_id "Ledus.S5G106900.t1"; gene_id "Ledus.S5G106900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8278.t1 is derived from g12949.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10391091	10399603	.	+	.	Ledus.S5G105600
Ledus.S5	AUGUSTUS	transcript	10391091	10399603	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	start_codon	10391091	10391093	.	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10391091	10391326	0.9	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10391091	10391326	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10391327	10391844	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10391845	10391893	1	+	1	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10391845	10391893	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10391894	10392124	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10392125	10392184	1	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10392125	10392184	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10392185	10392314	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10392315	10392406	1	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10392315	10392406	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10392407	10392547	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10392548	10392599	1	+	1	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10392548	10392599	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10392600	10392717	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10392718	10392780	1	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10392718	10392780	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10392781	10393059	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10393060	10393109	1	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10393060	10393109	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10393110	10393416	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10393417	10393492	1	+	1	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10393417	10393492	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10393493	10393801	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10393802	10394011	1	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10393802	10394011	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10394012	10394195	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10394196	10394302	1	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10394196	10394302	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10394303	10394436	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10394437	10394545	1	+	1	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10394437	10394545	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10394546	10394649	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10394650	10394850	0.84	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10394650	10394850	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10394851	10394959	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10394960	10395175	0.69	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10394960	10395175	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10395176	10395350	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10395351	10395461	1	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10395351	10395461	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10395462	10395550	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10395551	10395826	0.99	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10395551	10395826	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10395827	10396009	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10396010	10396284	0.97	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10396010	10396284	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10396285	10396456	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10396457	10396811	1	+	1	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10396457	10396811	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10396812	10396915	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10396916	10397200	0.99	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10396916	10397200	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10397201	10397294	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10397295	10397849	0.73	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10397295	10397849	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10397850	10397998	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10397999	10398075	0.87	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10397999	10398075	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	intron	10398076	10398270	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	CDS	10398271	10399603	0.86	+	1	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	exon	10398271	10399603	.	+	.	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
Ledus.S5	AUGUSTUS	stop_codon	10399604	10399606	.	+	0	transcript_id "Ledus.S5G105600.t1"; gene_id "Ledus.S5G105600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6934.t1 is derived from g4378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35642869	35643171	.	+	.	Ledus.S1G435500
Ledus.S1	AUGUSTUS	transcript	35642869	35643171	.	+	.	transcript_id "Ledus.S1G435500.t1"; gene_id "Ledus.S1G435500"
Ledus.S1	AUGUSTUS	start_codon	35642869	35642871	.	+	0	transcript_id "Ledus.S1G435500.t1"; gene_id "Ledus.S1G435500"
Ledus.S1	AUGUSTUS	CDS	35642869	35643171	0.93	+	0	transcript_id "Ledus.S1G435500.t1"; gene_id "Ledus.S1G435500"
Ledus.S1	AUGUSTUS	exon	35642869	35643171	.	+	.	transcript_id "Ledus.S1G435500.t1"; gene_id "Ledus.S1G435500"
Ledus.S1	AUGUSTUS	stop_codon	35643172	35643174	.	+	0	transcript_id "Ledus.S1G435500.t1"; gene_id "Ledus.S1G435500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg708.t1 is derived from g7569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4339173	4343190	.	+	.	Ledus.S2G059000
Ledus.S2	AUGUSTUS	transcript	4339173	4343190	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	start_codon	4339173	4339175	.	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4339173	4339284	1	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4339173	4339284	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4339285	4339358	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4339359	4339456	1	+	2	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4339359	4339456	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4339457	4339530	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4339531	4339622	1	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4339531	4339622	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4339623	4339695	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4339696	4339767	1	+	1	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4339696	4339767	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4339768	4339858	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4339859	4339961	1	+	1	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4339859	4339961	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4339962	4340109	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4340110	4340324	1	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4340110	4340324	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4340325	4340430	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4340431	4340498	1	+	1	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4340431	4340498	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4340499	4340593	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4340594	4340675	1	+	2	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4340594	4340675	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4340676	4340785	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4340786	4340951	0.94	+	1	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4340786	4340951	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4340952	4341126	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4341127	4341174	1	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4341127	4341174	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4341175	4341270	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4341271	4341361	1	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4341271	4341361	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4341362	4341445	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4341446	4341535	1	+	2	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4341446	4341535	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4341536	4341611	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4341612	4341691	1	+	2	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4341612	4341691	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4341692	4341771	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4341772	4341881	1	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4341772	4341881	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4341882	4341975	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4341976	4342000	1	+	1	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4341976	4342000	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4342001	4342256	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4342257	4342445	1	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4342257	4342445	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4342446	4342564	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4342565	4342639	0.95	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4342565	4342639	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4342640	4342727	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4342728	4342805	0.95	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4342728	4342805	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4342806	4342889	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4342890	4342901	0.88	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4342890	4342901	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4342902	4342966	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4342967	4343043	0.39	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4342967	4343043	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	intron	4343044	4343129	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	CDS	4343130	4343190	0.9	+	1	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	exon	4343130	4343190	.	+	.	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
Ledus.S2	AUGUSTUS	stop_codon	4343191	4343193	.	+	0	transcript_id "Ledus.S2G059000.t1"; gene_id "Ledus.S2G059000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3065.t1 is derived from g500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5623546	5624638	.	+	.	Ledus.S1G048600
Ledus.S1	AUGUSTUS	transcript	5623546	5624638	.	+	.	transcript_id "Ledus.S1G048600.t1"; gene_id "Ledus.S1G048600"
Ledus.S1	AUGUSTUS	start_codon	5623546	5623548	.	+	0	transcript_id "Ledus.S1G048600.t1"; gene_id "Ledus.S1G048600"
Ledus.S1	AUGUSTUS	CDS	5623546	5623582	1	+	0	transcript_id "Ledus.S1G048600.t1"; gene_id "Ledus.S1G048600"
Ledus.S1	AUGUSTUS	exon	5623546	5623582	.	+	.	transcript_id "Ledus.S1G048600.t1"; gene_id "Ledus.S1G048600"
Ledus.S1	AUGUSTUS	intron	5623583	5623663	.	+	.	transcript_id "Ledus.S1G048600.t1"; gene_id "Ledus.S1G048600"
Ledus.S1	AUGUSTUS	CDS	5623664	5623963	1	+	2	transcript_id "Ledus.S1G048600.t1"; gene_id "Ledus.S1G048600"
Ledus.S1	AUGUSTUS	exon	5623664	5623963	.	+	.	transcript_id "Ledus.S1G048600.t1"; gene_id "Ledus.S1G048600"
Ledus.S1	AUGUSTUS	intron	5623964	5624585	.	+	.	transcript_id "Ledus.S1G048600.t1"; gene_id "Ledus.S1G048600"
Ledus.S1	AUGUSTUS	CDS	5624586	5624638	1	+	2	transcript_id "Ledus.S1G048600.t1"; gene_id "Ledus.S1G048600"
Ledus.S1	AUGUSTUS	exon	5624586	5624638	.	+	.	transcript_id "Ledus.S1G048600.t1"; gene_id "Ledus.S1G048600"
Ledus.S1	AUGUSTUS	stop_codon	5624639	5624641	.	+	0	transcript_id "Ledus.S1G048600.t1"; gene_id "Ledus.S1G048600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6878.t1 is derived from g4322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34918356	34921884	.	-	.	Ledus.S1G429900
Ledus.S1	AUGUSTUS	transcript	34918356	34921884	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	stop_codon	34918353	34918355	.	-	0	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	CDS	34918356	34919133	1	-	1	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	exon	34918356	34919133	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	intron	34919134	34919208	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	CDS	34919209	34919475	1	-	1	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	exon	34919209	34919475	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	intron	34919476	34919539	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	CDS	34919540	34919844	1	-	0	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	exon	34919540	34919844	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	intron	34919845	34919939	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	CDS	34919940	34920047	1	-	0	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	exon	34919940	34920047	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	intron	34920048	34920119	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	CDS	34920120	34920205	1	-	2	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	exon	34920120	34920205	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	intron	34920206	34920286	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	CDS	34920287	34920610	1	-	2	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	exon	34920287	34920610	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	intron	34920611	34920696	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	CDS	34920697	34920937	1	-	0	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	exon	34920697	34920937	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	intron	34920938	34921008	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	CDS	34921009	34921292	1	-	2	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	exon	34921009	34921292	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	intron	34921293	34921365	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	CDS	34921366	34921781	0.99	-	1	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	exon	34921366	34921781	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	intron	34921782	34921873	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	CDS	34921874	34921884	0.71	-	0	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	exon	34921874	34921884	.	-	.	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
Ledus.S1	AUGUSTUS	start_codon	34921882	34921884	.	-	0	transcript_id "Ledus.S1G429900.t1"; gene_id "Ledus.S1G429900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7017.t1 is derived from g6548.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	826446	828806	.	+	.	Ledus.C7G007800
Ledus.C7	AUGUSTUS	transcript	826446	828806	.	+	.	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	start_codon	826446	826448	.	+	0	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	CDS	826446	826680	0.99	+	0	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	exon	826446	826680	.	+	.	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	intron	826681	826768	.	+	.	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	CDS	826769	826922	1	+	2	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	exon	826769	826922	.	+	.	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	intron	826923	827064	.	+	.	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	CDS	827065	827226	1	+	1	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	exon	827065	827226	.	+	.	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	intron	827227	827309	.	+	.	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	CDS	827310	827922	1	+	1	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	exon	827310	827922	.	+	.	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	intron	827923	827998	.	+	.	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	CDS	827999	828409	0.89	+	0	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	exon	827999	828409	.	+	.	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	intron	828410	828521	.	+	.	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	CDS	828522	828806	0.98	+	0	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	exon	828522	828806	.	+	.	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
Ledus.C7	AUGUSTUS	stop_codon	828807	828809	.	+	0	transcript_id "Ledus.C7G007800.t1"; gene_id "Ledus.C7G007800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5213.t1 is derived from g2652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22486303	22488178	.	-	.	Ledus.S1G263400
Ledus.S1	AUGUSTUS	transcript	22486303	22488178	.	-	.	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	stop_codon	22486300	22486302	.	-	0	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	CDS	22486303	22486953	0.99	-	0	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	exon	22486303	22486953	.	-	.	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	intron	22486954	22487022	.	-	.	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	CDS	22487023	22487222	1	-	2	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	exon	22487023	22487222	.	-	.	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	intron	22487223	22487297	.	-	.	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	CDS	22487298	22487367	1	-	0	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	exon	22487298	22487367	.	-	.	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	intron	22487368	22487441	.	-	.	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	CDS	22487442	22487805	0.89	-	1	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	exon	22487442	22487805	.	-	.	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	intron	22487806	22487876	.	-	.	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	CDS	22487877	22488178	0.92	-	0	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	exon	22487877	22488178	.	-	.	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
Ledus.S1	AUGUSTUS	start_codon	22488176	22488178	.	-	0	transcript_id "Ledus.S1G263400.t1"; gene_id "Ledus.S1G263400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12784.t1 is derived from g6406.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14459222	14460493	.	+	.	Ledus.S4G194000
Ledus.S4	AUGUSTUS	transcript	14459222	14460493	.	+	.	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	start_codon	14459222	14459224	.	+	0	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	CDS	14459222	14459227	0.52	+	0	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	exon	14459222	14459227	.	+	.	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	intron	14459228	14459317	.	+	.	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	CDS	14459318	14459587	0.99	+	0	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	exon	14459318	14459587	.	+	.	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	intron	14459588	14459667	.	+	.	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	CDS	14459668	14459883	0.99	+	0	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	exon	14459668	14459883	.	+	.	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	intron	14459884	14459977	.	+	.	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	CDS	14459978	14460493	1	+	0	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	exon	14459978	14460493	.	+	.	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
Ledus.S4	AUGUSTUS	stop_codon	14460494	14460496	.	+	0	transcript_id "Ledus.S4G194000.t1"; gene_id "Ledus.S4G194000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5634.t1 is derived from g3073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25454408	25460051	.	+	.	Ledus.S1G305500
Ledus.S1	AUGUSTUS	transcript	25454408	25460051	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	start_codon	25454408	25454410	.	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25454408	25454590	1	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25454408	25454590	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25454591	25454906	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25454907	25454969	0.94	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25454907	25454969	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25454970	25455074	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25455075	25455130	0.97	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25455075	25455130	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25455131	25455348	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25455349	25455420	1	+	1	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25455349	25455420	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25455421	25455531	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25455532	25455637	1	+	1	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25455532	25455637	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25455638	25455780	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25455781	25455831	1	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25455781	25455831	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25455832	25455953	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25455954	25456049	1	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25455954	25456049	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25456050	25456182	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25456183	25456242	0.99	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25456183	25456242	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25456243	25456354	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25456355	25456468	0.99	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25456355	25456468	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25456469	25456566	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25456567	25456653	1	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25456567	25456653	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25456654	25456886	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25456887	25456990	1	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25456887	25456990	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25456991	25457182	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25457183	25457278	1	+	1	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25457183	25457278	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25457279	25457368	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25457369	25457489	1	+	1	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25457369	25457489	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25457490	25457690	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25457691	25457771	0.97	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25457691	25457771	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25457772	25457873	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25457874	25458014	0.95	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25457874	25458014	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25458015	25458104	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25458105	25458356	1	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25458105	25458356	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25458357	25458463	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25458464	25458607	1	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25458464	25458607	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25458608	25458741	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25458742	25458928	1	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25458742	25458928	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25458929	25459100	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25459101	25459198	1	+	2	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25459101	25459198	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25459199	25459369	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25459370	25459449	1	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25459370	25459449	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25459450	25459575	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25459576	25459669	1	+	1	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25459576	25459669	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25459670	25459767	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25459768	25459854	1	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25459768	25459854	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	intron	25459855	25459991	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	CDS	25459992	25460051	1	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	exon	25459992	25460051	.	+	.	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
Ledus.S1	AUGUSTUS	stop_codon	25460052	25460054	.	+	0	transcript_id "Ledus.S1G305500.t1"; gene_id "Ledus.S1G305500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6818.t1 is derived from g4262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34435513	34436638	.	-	.	Ledus.S1G423900
Ledus.S1	AUGUSTUS	transcript	34435513	34436638	.	-	.	transcript_id "Ledus.S1G423900.t1"; gene_id "Ledus.S1G423900"
Ledus.S1	AUGUSTUS	stop_codon	34435510	34435512	.	-	0	transcript_id "Ledus.S1G423900.t1"; gene_id "Ledus.S1G423900"
Ledus.S1	AUGUSTUS	CDS	34435513	34435515	0.63	-	0	transcript_id "Ledus.S1G423900.t1"; gene_id "Ledus.S1G423900"
Ledus.S1	AUGUSTUS	exon	34435513	34435515	.	-	.	transcript_id "Ledus.S1G423900.t1"; gene_id "Ledus.S1G423900"
Ledus.S1	AUGUSTUS	intron	34435516	34435645	.	-	.	transcript_id "Ledus.S1G423900.t1"; gene_id "Ledus.S1G423900"
Ledus.S1	AUGUSTUS	CDS	34435646	34436638	0.82	-	0	transcript_id "Ledus.S1G423900.t1"; gene_id "Ledus.S1G423900"
Ledus.S1	AUGUSTUS	exon	34435646	34436638	.	-	.	transcript_id "Ledus.S1G423900.t1"; gene_id "Ledus.S1G423900"
Ledus.S1	AUGUSTUS	start_codon	34436636	34436638	.	-	0	transcript_id "Ledus.S1G423900.t1"; gene_id "Ledus.S1G423900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12328.t1 is derived from g5949.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11225069	11226096	.	+	.	Ledus.S4G148400
Ledus.S4	AUGUSTUS	transcript	11225069	11226096	.	+	.	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	start_codon	11225069	11225071	.	+	0	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	CDS	11225069	11225154	0.69	+	0	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	exon	11225069	11225154	.	+	.	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	intron	11225155	11225239	.	+	.	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	CDS	11225240	11225331	1	+	1	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	exon	11225240	11225331	.	+	.	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	intron	11225332	11225408	.	+	.	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	CDS	11225409	11225539	1	+	2	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	exon	11225409	11225539	.	+	.	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	intron	11225540	11225607	.	+	.	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	CDS	11225608	11226096	0.32	+	0	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	exon	11225608	11226096	.	+	.	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
Ledus.S4	AUGUSTUS	stop_codon	11226097	11226099	.	+	0	transcript_id "Ledus.S4G148400.t1"; gene_id "Ledus.S4G148400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5736.t1 is derived from g3175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26411316	26411873	.	-	.	Ledus.S1G315700
Ledus.S1	AUGUSTUS	transcript	26411316	26411873	.	-	.	transcript_id "Ledus.S1G315700.t1"; gene_id "Ledus.S1G315700"
Ledus.S1	AUGUSTUS	stop_codon	26411313	26411315	.	-	0	transcript_id "Ledus.S1G315700.t1"; gene_id "Ledus.S1G315700"
Ledus.S1	AUGUSTUS	CDS	26411316	26411554	0.58	-	2	transcript_id "Ledus.S1G315700.t1"; gene_id "Ledus.S1G315700"
Ledus.S1	AUGUSTUS	exon	26411316	26411554	.	-	.	transcript_id "Ledus.S1G315700.t1"; gene_id "Ledus.S1G315700"
Ledus.S1	AUGUSTUS	intron	26411555	26411797	.	-	.	transcript_id "Ledus.S1G315700.t1"; gene_id "Ledus.S1G315700"
Ledus.S1	AUGUSTUS	CDS	26411798	26411873	0.27	-	0	transcript_id "Ledus.S1G315700.t1"; gene_id "Ledus.S1G315700"
Ledus.S1	AUGUSTUS	exon	26411798	26411873	.	-	.	transcript_id "Ledus.S1G315700.t1"; gene_id "Ledus.S1G315700"
Ledus.S1	AUGUSTUS	start_codon	26411871	26411873	.	-	0	transcript_id "Ledus.S1G315700.t1"; gene_id "Ledus.S1G315700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10194.t1 is derived from g11224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13512551	13514772	.	-	.	Ledus.S3G167100
Ledus.S3	AUGUSTUS	transcript	13512551	13514772	.	-	.	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	stop_codon	13512548	13512550	.	-	0	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	CDS	13512551	13512694	0.57	-	0	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	exon	13512551	13512694	.	-	.	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	intron	13512695	13512912	.	-	.	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	CDS	13512913	13513141	1	-	1	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	exon	13512913	13513141	.	-	.	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	intron	13513142	13513231	.	-	.	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	CDS	13513232	13513335	1	-	0	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	exon	13513232	13513335	.	-	.	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	intron	13513336	13513791	.	-	.	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	CDS	13513792	13514276	0.74	-	2	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	exon	13513792	13514276	.	-	.	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	intron	13514277	13514495	.	-	.	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	CDS	13514496	13514532	0.74	-	0	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	exon	13514496	13514532	.	-	.	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	intron	13514533	13514652	.	-	.	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	CDS	13514653	13514772	0.61	-	0	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	exon	13514653	13514772	.	-	.	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
Ledus.S3	AUGUSTUS	start_codon	13514770	13514772	.	-	0	transcript_id "Ledus.S3G167100.t1"; gene_id "Ledus.S3G167100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4816.t1 is derived from g2254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19936691	19939429	.	+	.	Ledus.S1G223700
Ledus.S1	AUGUSTUS	transcript	19936691	19939429	.	+	.	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	start_codon	19936691	19936693	.	+	0	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	CDS	19936691	19936797	0.51	+	0	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	exon	19936691	19936797	.	+	.	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	intron	19936798	19936984	.	+	.	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	CDS	19936985	19937619	0.66	+	1	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	exon	19936985	19937619	.	+	.	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	intron	19937620	19937757	.	+	.	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	CDS	19937758	19938683	0.93	+	2	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	exon	19937758	19938683	.	+	.	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	intron	19938684	19939040	.	+	.	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	CDS	19939041	19939063	0.96	+	0	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	exon	19939041	19939063	.	+	.	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	intron	19939064	19939208	.	+	.	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	CDS	19939209	19939226	0.96	+	1	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	exon	19939209	19939226	.	+	.	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	intron	19939227	19939425	.	+	.	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	CDS	19939426	19939429	0.96	+	1	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	exon	19939426	19939429	.	+	.	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
Ledus.S1	AUGUSTUS	stop_codon	19939430	19939432	.	+	0	transcript_id "Ledus.S1G223700.t1"; gene_id "Ledus.S1G223700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10821.t1 is derived from g11853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18041943	18044311	.	+	.	Ledus.S3G229800
Ledus.S3	AUGUSTUS	transcript	18041943	18044311	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	start_codon	18041943	18041945	.	+	0	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18041943	18042101	1	+	0	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18041943	18042101	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18042102	18042186	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18042187	18042262	1	+	0	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18042187	18042262	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18042263	18042496	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18042497	18042585	1	+	2	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18042497	18042585	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18042586	18042824	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18042825	18042914	0.8	+	0	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18042825	18042914	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18042915	18043020	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18043021	18043065	0.8	+	0	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18043021	18043065	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18043066	18043195	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18043196	18043266	1	+	0	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18043196	18043266	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18043267	18043360	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18043361	18043493	1	+	1	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18043361	18043493	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18043494	18044069	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18044070	18044170	1	+	0	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18044070	18044170	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18044171	18044304	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18044305	18044311	1	+	1	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18044305	18044311	.	+	.	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	stop_codon	18044312	18044314	.	+	0	transcript_id "Ledus.S3G229800.t1"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	transcript	18041943	18043696	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	start_codon	18041943	18041945	.	+	0	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18041943	18042101	0.98	+	0	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18041943	18042101	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18042102	18042186	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18042187	18042262	1	+	0	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18042187	18042262	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18042263	18042496	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18042497	18042585	1	+	2	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18042497	18042585	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18042586	18042824	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18042825	18042914	0.69	+	0	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18042825	18042914	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18042915	18043020	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18043021	18043065	0.69	+	0	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18043021	18043065	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18043066	18043195	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18043196	18043266	1	+	0	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18043196	18043266	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18043267	18043360	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18043361	18043493	1	+	1	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18043361	18043493	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	intron	18043494	18043672	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	CDS	18043673	18043696	1	+	0	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	exon	18043673	18043696	.	+	.	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
Ledus.S3	AUGUSTUS	stop_codon	18043697	18043699	.	+	0	transcript_id "Ledus.S3G229800.t2"; gene_id "Ledus.S3G229800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8429.t1 is derived from g13101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11584105	11585533	.	-	.	Ledus.S5G120700
Ledus.S5	AUGUSTUS	transcript	11584105	11585533	.	-	.	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	stop_codon	11584102	11584104	.	-	0	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	CDS	11584105	11584641	1	-	0	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	exon	11584105	11584641	.	-	.	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	intron	11584642	11584805	.	-	.	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	CDS	11584806	11584885	1	-	2	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	exon	11584806	11584885	.	-	.	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	intron	11584886	11584979	.	-	.	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	CDS	11584980	11585337	1	-	0	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	exon	11584980	11585337	.	-	.	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	intron	11585338	11585461	.	-	.	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	CDS	11585462	11585533	0.74	-	0	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	exon	11585462	11585533	.	-	.	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
Ledus.S5	AUGUSTUS	start_codon	11585531	11585533	.	-	0	transcript_id "Ledus.S5G120700.t1"; gene_id "Ledus.S5G120700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9917.t1 is derived from g10947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11203055	11206228	.	+	.	Ledus.S3G139400
Ledus.S3	AUGUSTUS	transcript	11203055	11206228	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	start_codon	11203055	11203057	.	+	0	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11203055	11203648	1	+	0	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11203055	11203648	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11203649	11204092	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11204093	11204248	1	+	0	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11204093	11204248	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11204249	11204357	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11204358	11204792	1	+	0	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11204358	11204792	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11204793	11204877	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11204878	11204982	1	+	0	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11204878	11204982	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11204983	11205067	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11205068	11205208	1	+	0	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11205068	11205208	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11205209	11205363	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11205364	11205567	1	+	0	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11205364	11205567	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11205568	11205655	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11205656	11205754	1	+	0	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11205656	11205754	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11205755	11205941	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11205942	11206053	0.76	+	0	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11205942	11206053	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11206054	11206160	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11206161	11206228	0.51	+	2	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11206161	11206228	.	+	.	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	stop_codon	11206229	11206231	.	+	0	transcript_id "Ledus.S3G139400.t1"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	transcript	11203055	11206228	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	start_codon	11203055	11203057	.	+	0	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11203055	11203648	0.99	+	0	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11203055	11203648	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11203649	11204104	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11204105	11204248	1	+	0	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11204105	11204248	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11204249	11204357	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11204358	11204792	1	+	0	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11204358	11204792	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11204793	11204877	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11204878	11204982	1	+	0	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11204878	11204982	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11204983	11205067	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11205068	11205208	1	+	0	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11205068	11205208	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11205209	11205363	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11205364	11205567	1	+	0	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11205364	11205567	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11205568	11205655	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11205656	11205754	1	+	0	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11205656	11205754	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11205755	11205941	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11205942	11206053	0.79	+	0	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11205942	11206053	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	intron	11206054	11206160	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	CDS	11206161	11206228	0.46	+	2	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	exon	11206161	11206228	.	+	.	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
Ledus.S3	AUGUSTUS	stop_codon	11206229	11206231	.	+	0	transcript_id "Ledus.S3G139400.t2"; gene_id "Ledus.S3G139400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1367.t1 is derived from g8228.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9484186	9484906	.	-	.	Ledus.S2G124900
Ledus.S2	AUGUSTUS	transcript	9484186	9484906	.	-	.	transcript_id "Ledus.S2G124900.t1"; gene_id "Ledus.S2G124900"
Ledus.S2	AUGUSTUS	stop_codon	9484183	9484185	.	-	0	transcript_id "Ledus.S2G124900.t1"; gene_id "Ledus.S2G124900"
Ledus.S2	AUGUSTUS	CDS	9484186	9484302	1	-	0	transcript_id "Ledus.S2G124900.t1"; gene_id "Ledus.S2G124900"
Ledus.S2	AUGUSTUS	exon	9484186	9484302	.	-	.	transcript_id "Ledus.S2G124900.t1"; gene_id "Ledus.S2G124900"
Ledus.S2	AUGUSTUS	intron	9484303	9484370	.	-	.	transcript_id "Ledus.S2G124900.t1"; gene_id "Ledus.S2G124900"
Ledus.S2	AUGUSTUS	CDS	9484371	9484502	1	-	0	transcript_id "Ledus.S2G124900.t1"; gene_id "Ledus.S2G124900"
Ledus.S2	AUGUSTUS	exon	9484371	9484502	.	-	.	transcript_id "Ledus.S2G124900.t1"; gene_id "Ledus.S2G124900"
Ledus.S2	AUGUSTUS	intron	9484503	9484825	.	-	.	transcript_id "Ledus.S2G124900.t1"; gene_id "Ledus.S2G124900"
Ledus.S2	AUGUSTUS	CDS	9484826	9484906	1	-	0	transcript_id "Ledus.S2G124900.t1"; gene_id "Ledus.S2G124900"
Ledus.S2	AUGUSTUS	exon	9484826	9484906	.	-	.	transcript_id "Ledus.S2G124900.t1"; gene_id "Ledus.S2G124900"
Ledus.S2	AUGUSTUS	start_codon	9484904	9484906	.	-	0	transcript_id "Ledus.S2G124900.t1"; gene_id "Ledus.S2G124900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg57.t1 is derived from g9470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	162797	163454	.	+	.	Ledus.C8G001700
Ledus.C8	AUGUSTUS	transcript	162797	163454	.	+	.	transcript_id "Ledus.C8G001700.t1"; gene_id "Ledus.C8G001700"
Ledus.C8	AUGUSTUS	start_codon	162797	162799	.	+	0	transcript_id "Ledus.C8G001700.t1"; gene_id "Ledus.C8G001700"
Ledus.C8	AUGUSTUS	CDS	162797	162873	0.24	+	0	transcript_id "Ledus.C8G001700.t1"; gene_id "Ledus.C8G001700"
Ledus.C8	AUGUSTUS	exon	162797	162873	.	+	.	transcript_id "Ledus.C8G001700.t1"; gene_id "Ledus.C8G001700"
Ledus.C8	AUGUSTUS	intron	162874	163075	.	+	.	transcript_id "Ledus.C8G001700.t1"; gene_id "Ledus.C8G001700"
Ledus.C8	AUGUSTUS	CDS	163076	163454	0.53	+	1	transcript_id "Ledus.C8G001700.t1"; gene_id "Ledus.C8G001700"
Ledus.C8	AUGUSTUS	exon	163076	163454	.	+	.	transcript_id "Ledus.C8G001700.t1"; gene_id "Ledus.C8G001700"
Ledus.C8	AUGUSTUS	stop_codon	163455	163457	.	+	0	transcript_id "Ledus.C8G001700.t1"; gene_id "Ledus.C8G001700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11347.t1 is derived from g4965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3712139	3713905	.	-	.	Ledus.S4G050300
Ledus.S4	AUGUSTUS	transcript	3712139	3713905	.	-	.	transcript_id "Ledus.S4G050300.t1"; gene_id "Ledus.S4G050300"
Ledus.S4	AUGUSTUS	stop_codon	3712136	3712138	.	-	0	transcript_id "Ledus.S4G050300.t1"; gene_id "Ledus.S4G050300"
Ledus.S4	AUGUSTUS	CDS	3712139	3713905	0.25	-	0	transcript_id "Ledus.S4G050300.t1"; gene_id "Ledus.S4G050300"
Ledus.S4	AUGUSTUS	exon	3712139	3713905	.	-	.	transcript_id "Ledus.S4G050300.t1"; gene_id "Ledus.S4G050300"
Ledus.S4	AUGUSTUS	start_codon	3713903	3713905	.	-	0	transcript_id "Ledus.S4G050300.t1"; gene_id "Ledus.S4G050300"
# This transcript jg10227.t2 is derived from g11257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10228.t1 is derived from g11258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13671194	13672814	.	-	.	Ledus.S3G170500
Ledus.S3	AUGUSTUS	transcript	13671194	13672814	.	-	.	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	stop_codon	13671191	13671193	.	-	0	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	CDS	13671194	13671348	0.83	-	2	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	exon	13671194	13671348	.	-	.	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	intron	13671349	13671497	.	-	.	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	CDS	13671498	13671588	0.52	-	0	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	exon	13671498	13671588	.	-	.	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	intron	13671589	13671753	.	-	.	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	CDS	13671754	13671914	0.85	-	2	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	exon	13671754	13671914	.	-	.	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	intron	13671915	13671989	.	-	.	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	CDS	13671990	13672063	0.98	-	1	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	exon	13671990	13672063	.	-	.	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	intron	13672064	13672497	.	-	.	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	CDS	13672498	13672814	0.8	-	0	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	exon	13672498	13672814	.	-	.	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
Ledus.S3	AUGUSTUS	start_codon	13672812	13672814	.	-	0	transcript_id "Ledus.S3G170500.t1"; gene_id "Ledus.S3G170500"
# This transcript jg7682.t2 is derived from g12353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7683.t1 is derived from g12354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5167867	5168334	.	-	.	Ledus.S5G046100
Ledus.S5	AUGUSTUS	transcript	5167867	5168334	.	-	.	transcript_id "Ledus.S5G046100.t1"; gene_id "Ledus.S5G046100"
Ledus.S5	AUGUSTUS	stop_codon	5167864	5167866	.	-	0	transcript_id "Ledus.S5G046100.t1"; gene_id "Ledus.S5G046100"
Ledus.S5	AUGUSTUS	CDS	5167867	5168217	0.98	-	0	transcript_id "Ledus.S5G046100.t1"; gene_id "Ledus.S5G046100"
Ledus.S5	AUGUSTUS	exon	5167867	5168217	.	-	.	transcript_id "Ledus.S5G046100.t1"; gene_id "Ledus.S5G046100"
Ledus.S5	AUGUSTUS	intron	5168218	5168310	.	-	.	transcript_id "Ledus.S5G046100.t1"; gene_id "Ledus.S5G046100"
Ledus.S5	AUGUSTUS	CDS	5168311	5168334	0.94	-	0	transcript_id "Ledus.S5G046100.t1"; gene_id "Ledus.S5G046100"
Ledus.S5	AUGUSTUS	exon	5168311	5168334	.	-	.	transcript_id "Ledus.S5G046100.t1"; gene_id "Ledus.S5G046100"
Ledus.S5	AUGUSTUS	start_codon	5168332	5168334	.	-	0	transcript_id "Ledus.S5G046100.t1"; gene_id "Ledus.S5G046100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5672.t1 is derived from g3111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25740656	25740937	.	+	.	Ledus.S1G309300
Ledus.S1	AUGUSTUS	transcript	25740656	25740937	.	+	.	transcript_id "Ledus.S1G309300.t1"; gene_id "Ledus.S1G309300"
Ledus.S1	AUGUSTUS	start_codon	25740656	25740658	.	+	0	transcript_id "Ledus.S1G309300.t1"; gene_id "Ledus.S1G309300"
Ledus.S1	AUGUSTUS	CDS	25740656	25740937	0.88	+	0	transcript_id "Ledus.S1G309300.t1"; gene_id "Ledus.S1G309300"
Ledus.S1	AUGUSTUS	exon	25740656	25740937	.	+	.	transcript_id "Ledus.S1G309300.t1"; gene_id "Ledus.S1G309300"
Ledus.S1	AUGUSTUS	stop_codon	25740938	25740940	.	+	0	transcript_id "Ledus.S1G309300.t1"; gene_id "Ledus.S1G309300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg101.t1 is derived from g9514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	415166	417292	.	-	.	Ledus.C8G006100
Ledus.C8	AUGUSTUS	transcript	415166	417292	.	-	.	transcript_id "Ledus.C8G006100.t1"; gene_id "Ledus.C8G006100"
Ledus.C8	AUGUSTUS	stop_codon	415163	415165	.	-	0	transcript_id "Ledus.C8G006100.t1"; gene_id "Ledus.C8G006100"
Ledus.C8	AUGUSTUS	CDS	415166	416618	0.74	-	1	transcript_id "Ledus.C8G006100.t1"; gene_id "Ledus.C8G006100"
Ledus.C8	AUGUSTUS	exon	415166	416618	.	-	.	transcript_id "Ledus.C8G006100.t1"; gene_id "Ledus.C8G006100"
Ledus.C8	AUGUSTUS	intron	416619	416728	.	-	.	transcript_id "Ledus.C8G006100.t1"; gene_id "Ledus.C8G006100"
Ledus.C8	AUGUSTUS	CDS	416729	417123	0.64	-	0	transcript_id "Ledus.C8G006100.t1"; gene_id "Ledus.C8G006100"
Ledus.C8	AUGUSTUS	exon	416729	417123	.	-	.	transcript_id "Ledus.C8G006100.t1"; gene_id "Ledus.C8G006100"
Ledus.C8	AUGUSTUS	intron	417124	417214	.	-	.	transcript_id "Ledus.C8G006100.t1"; gene_id "Ledus.C8G006100"
Ledus.C8	AUGUSTUS	CDS	417215	417292	0.97	-	0	transcript_id "Ledus.C8G006100.t1"; gene_id "Ledus.C8G006100"
Ledus.C8	AUGUSTUS	exon	417215	417292	.	-	.	transcript_id "Ledus.C8G006100.t1"; gene_id "Ledus.C8G006100"
Ledus.C8	AUGUSTUS	start_codon	417290	417292	.	-	0	transcript_id "Ledus.C8G006100.t1"; gene_id "Ledus.C8G006100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11220.t1 is derived from g4838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2800155	2801199	.	-	.	Ledus.S4G037600
Ledus.S4	AUGUSTUS	transcript	2800155	2801199	.	-	.	transcript_id "Ledus.S4G037600.t1"; gene_id "Ledus.S4G037600"
Ledus.S4	AUGUSTUS	stop_codon	2800152	2800154	.	-	0	transcript_id "Ledus.S4G037600.t1"; gene_id "Ledus.S4G037600"
Ledus.S4	AUGUSTUS	CDS	2800155	2800450	0.85	-	2	transcript_id "Ledus.S4G037600.t1"; gene_id "Ledus.S4G037600"
Ledus.S4	AUGUSTUS	exon	2800155	2800450	.	-	.	transcript_id "Ledus.S4G037600.t1"; gene_id "Ledus.S4G037600"
Ledus.S4	AUGUSTUS	intron	2800451	2800546	.	-	.	transcript_id "Ledus.S4G037600.t1"; gene_id "Ledus.S4G037600"
Ledus.S4	AUGUSTUS	CDS	2800547	2800919	0.6	-	0	transcript_id "Ledus.S4G037600.t1"; gene_id "Ledus.S4G037600"
Ledus.S4	AUGUSTUS	exon	2800547	2800919	.	-	.	transcript_id "Ledus.S4G037600.t1"; gene_id "Ledus.S4G037600"
Ledus.S4	AUGUSTUS	intron	2800920	2801136	.	-	.	transcript_id "Ledus.S4G037600.t1"; gene_id "Ledus.S4G037600"
Ledus.S4	AUGUSTUS	CDS	2801137	2801199	1	-	0	transcript_id "Ledus.S4G037600.t1"; gene_id "Ledus.S4G037600"
Ledus.S4	AUGUSTUS	exon	2801137	2801199	.	-	.	transcript_id "Ledus.S4G037600.t1"; gene_id "Ledus.S4G037600"
Ledus.S4	AUGUSTUS	start_codon	2801197	2801199	.	-	0	transcript_id "Ledus.S4G037600.t1"; gene_id "Ledus.S4G037600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4947.t1 is derived from g2385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20832187	20833156	.	+	.	Ledus.S1G236800
Ledus.S1	AUGUSTUS	transcript	20832187	20833156	.	+	.	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	start_codon	20832187	20832189	.	+	0	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	CDS	20832187	20832210	0.6	+	0	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	exon	20832187	20832210	.	+	.	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	intron	20832211	20832305	.	+	.	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	CDS	20832306	20832475	0.38	+	0	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	exon	20832306	20832475	.	+	.	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	intron	20832476	20832722	.	+	.	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	CDS	20832723	20832921	0.83	+	1	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	exon	20832723	20832921	.	+	.	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	intron	20832922	20833045	.	+	.	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	CDS	20833046	20833156	0.85	+	0	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	exon	20833046	20833156	.	+	.	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
Ledus.S1	AUGUSTUS	stop_codon	20833157	20833159	.	+	0	transcript_id "Ledus.S1G236800.t1"; gene_id "Ledus.S1G236800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10917.t1 is derived from g4535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	562866	564515	.	-	.	Ledus.S4G007300
Ledus.S4	AUGUSTUS	transcript	562866	564515	.	-	.	transcript_id "Ledus.S4G007300.t1"; gene_id "Ledus.S4G007300"
Ledus.S4	AUGUSTUS	stop_codon	562863	562865	.	-	0	transcript_id "Ledus.S4G007300.t1"; gene_id "Ledus.S4G007300"
Ledus.S4	AUGUSTUS	CDS	562866	562991	0.68	-	0	transcript_id "Ledus.S4G007300.t1"; gene_id "Ledus.S4G007300"
Ledus.S4	AUGUSTUS	exon	562866	562991	.	-	.	transcript_id "Ledus.S4G007300.t1"; gene_id "Ledus.S4G007300"
Ledus.S4	AUGUSTUS	intron	562992	563564	.	-	.	transcript_id "Ledus.S4G007300.t1"; gene_id "Ledus.S4G007300"
Ledus.S4	AUGUSTUS	CDS	563565	564515	0.14	-	0	transcript_id "Ledus.S4G007300.t1"; gene_id "Ledus.S4G007300"
Ledus.S4	AUGUSTUS	exon	563565	564515	.	-	.	transcript_id "Ledus.S4G007300.t1"; gene_id "Ledus.S4G007300"
Ledus.S4	AUGUSTUS	start_codon	564513	564515	.	-	0	transcript_id "Ledus.S4G007300.t1"; gene_id "Ledus.S4G007300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg266.t1 is derived from g7127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1295695	1296366	.	+	.	Ledus.S2G014800
Ledus.S2	AUGUSTUS	transcript	1295695	1296366	.	+	.	transcript_id "Ledus.S2G014800.t1"; gene_id "Ledus.S2G014800"
Ledus.S2	AUGUSTUS	start_codon	1295695	1295697	.	+	0	transcript_id "Ledus.S2G014800.t1"; gene_id "Ledus.S2G014800"
Ledus.S2	AUGUSTUS	CDS	1295695	1296218	0.8	+	0	transcript_id "Ledus.S2G014800.t1"; gene_id "Ledus.S2G014800"
Ledus.S2	AUGUSTUS	exon	1295695	1296218	.	+	.	transcript_id "Ledus.S2G014800.t1"; gene_id "Ledus.S2G014800"
Ledus.S2	AUGUSTUS	intron	1296219	1296290	.	+	.	transcript_id "Ledus.S2G014800.t1"; gene_id "Ledus.S2G014800"
Ledus.S2	AUGUSTUS	CDS	1296291	1296366	0.37	+	1	transcript_id "Ledus.S2G014800.t1"; gene_id "Ledus.S2G014800"
Ledus.S2	AUGUSTUS	exon	1296291	1296366	.	+	.	transcript_id "Ledus.S2G014800.t1"; gene_id "Ledus.S2G014800"
Ledus.S2	AUGUSTUS	stop_codon	1296367	1296369	.	+	0	transcript_id "Ledus.S2G014800.t1"; gene_id "Ledus.S2G014800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10770.t1 is derived from g11802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17568489	17569985	.	-	.	Ledus.S3G224700
Ledus.S3	AUGUSTUS	transcript	17568489	17569985	.	-	.	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	stop_codon	17568486	17568488	.	-	0	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	CDS	17568489	17568590	0.82	-	0	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	exon	17568489	17568590	.	-	.	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	intron	17568591	17568821	.	-	.	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	CDS	17568822	17569004	1	-	0	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	exon	17568822	17569004	.	-	.	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	intron	17569005	17569086	.	-	.	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	CDS	17569087	17569177	1	-	1	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	exon	17569087	17569177	.	-	.	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	intron	17569178	17569418	.	-	.	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	CDS	17569419	17569552	1	-	0	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	exon	17569419	17569552	.	-	.	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	intron	17569553	17569645	.	-	.	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	CDS	17569646	17569705	0.88	-	0	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	exon	17569646	17569705	.	-	.	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	intron	17569706	17569781	.	-	.	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	CDS	17569782	17569985	0.32	-	0	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	exon	17569782	17569985	.	-	.	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
Ledus.S3	AUGUSTUS	start_codon	17569983	17569985	.	-	0	transcript_id "Ledus.S3G224700.t1"; gene_id "Ledus.S3G224700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9639.t1 is derived from g10669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8563607	8563962	.	+	.	Ledus.S3G111600
Ledus.S3	AUGUSTUS	transcript	8563607	8563962	.	+	.	transcript_id "Ledus.S3G111600.t1"; gene_id "Ledus.S3G111600"
Ledus.S3	AUGUSTUS	start_codon	8563607	8563609	.	+	0	transcript_id "Ledus.S3G111600.t1"; gene_id "Ledus.S3G111600"
Ledus.S3	AUGUSTUS	CDS	8563607	8563766	0.98	+	0	transcript_id "Ledus.S3G111600.t1"; gene_id "Ledus.S3G111600"
Ledus.S3	AUGUSTUS	exon	8563607	8563766	.	+	.	transcript_id "Ledus.S3G111600.t1"; gene_id "Ledus.S3G111600"
Ledus.S3	AUGUSTUS	intron	8563767	8563906	.	+	.	transcript_id "Ledus.S3G111600.t1"; gene_id "Ledus.S3G111600"
Ledus.S3	AUGUSTUS	CDS	8563907	8563962	0.5	+	2	transcript_id "Ledus.S3G111600.t1"; gene_id "Ledus.S3G111600"
Ledus.S3	AUGUSTUS	exon	8563907	8563962	.	+	.	transcript_id "Ledus.S3G111600.t1"; gene_id "Ledus.S3G111600"
Ledus.S3	AUGUSTUS	stop_codon	8563963	8563965	.	+	0	transcript_id "Ledus.S3G111600.t1"; gene_id "Ledus.S3G111600"
# This transcript jg10506.t2 is derived from g11536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10507.t1 is derived from g11537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15657404	15658075	.	-	.	Ledus.S3G198400
Ledus.S3	AUGUSTUS	transcript	15657404	15658075	.	-	.	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	stop_codon	15657401	15657403	.	-	0	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	CDS	15657404	15657408	0.44	-	2	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	exon	15657404	15657408	.	-	.	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	intron	15657409	15657549	.	-	.	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	CDS	15657550	15657581	0.32	-	1	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	exon	15657550	15657581	.	-	.	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	intron	15657582	15657806	.	-	.	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	CDS	15657807	15657966	0.4	-	2	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	exon	15657807	15657966	.	-	.	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	intron	15657967	15658041	.	-	.	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	CDS	15658042	15658075	0.35	-	0	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	exon	15658042	15658075	.	-	.	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
Ledus.S3	AUGUSTUS	start_codon	15658073	15658075	.	-	0	transcript_id "Ledus.S3G198400.t1"; gene_id "Ledus.S3G198400"
# This transcript jg3229.t2 is derived from g664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3230.t1 is derived from g665.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7008536	7010423	.	-	.	Ledus.S1G065100
Ledus.S1	AUGUSTUS	transcript	7008536	7010423	.	-	.	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	stop_codon	7008533	7008535	.	-	0	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	CDS	7008536	7008739	1	-	0	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	exon	7008536	7008739	.	-	.	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	intron	7008740	7008824	.	-	.	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	CDS	7008825	7009066	1	-	2	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	exon	7008825	7009066	.	-	.	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	intron	7009067	7009212	.	-	.	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	CDS	7009213	7009354	0.94	-	0	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	exon	7009213	7009354	.	-	.	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	intron	7009355	7009459	.	-	.	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	CDS	7009460	7009612	0.98	-	0	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	exon	7009460	7009612	.	-	.	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	intron	7009613	7010144	.	-	.	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	CDS	7010145	7010423	0.48	-	0	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	exon	7010145	7010423	.	-	.	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
Ledus.S1	AUGUSTUS	start_codon	7010421	7010423	.	-	0	transcript_id "Ledus.S1G065100.t1"; gene_id "Ledus.S1G065100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1422.t1 is derived from g8283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9977891	9981047	.	-	.	Ledus.S2G130400
Ledus.S2	AUGUSTUS	transcript	9977891	9981047	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	stop_codon	9977888	9977890	.	-	0	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	CDS	9977891	9978058	1	-	0	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	exon	9977891	9978058	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	intron	9978059	9978152	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	CDS	9978153	9978259	1	-	2	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	exon	9978153	9978259	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	intron	9978260	9978349	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	CDS	9978350	9978551	1	-	0	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	exon	9978350	9978551	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	intron	9978552	9978652	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	CDS	9978653	9978983	0.77	-	1	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	exon	9978653	9978983	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	intron	9978984	9979096	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	CDS	9979097	9979257	1	-	0	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	exon	9979097	9979257	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	intron	9979258	9979365	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	CDS	9979366	9979561	1	-	1	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	exon	9979366	9979561	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	intron	9979562	9979650	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	CDS	9979651	9981047	0.61	-	0	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	exon	9979651	9981047	.	-	.	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
Ledus.S2	AUGUSTUS	start_codon	9981045	9981047	.	-	0	transcript_id "Ledus.S2G130400.t1"; gene_id "Ledus.S2G130400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5312.t1 is derived from g2751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23260827	23265837	.	+	.	Ledus.S1G273300
Ledus.S1	AUGUSTUS	transcript	23260827	23265837	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	start_codon	23260827	23260829	.	+	0	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23260827	23260955	1	+	0	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23260827	23260955	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23260956	23261133	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23261134	23261459	0.94	+	0	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23261134	23261459	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23261460	23261618	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23261619	23261774	1	+	1	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23261619	23261774	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23261775	23261925	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23261926	23262010	1	+	1	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23261926	23262010	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23262011	23262236	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23262237	23262464	1	+	0	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23262237	23262464	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23262465	23262623	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23262624	23262671	1	+	0	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23262624	23262671	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23262672	23262790	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23262791	23262863	1	+	0	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23262791	23262863	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23262864	23263188	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23263189	23263624	1	+	2	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23263189	23263624	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23263625	23263881	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23263882	23264005	1	+	1	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23263882	23264005	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23264006	23264210	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23264211	23264425	1	+	0	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23264211	23264425	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23264426	23264552	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23264553	23264684	0.99	+	1	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23264553	23264684	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23264685	23264835	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23264836	23264926	1	+	1	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23264836	23264926	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23264927	23265020	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23265021	23265068	1	+	0	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23265021	23265068	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23265069	23265149	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23265150	23265278	1	+	0	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23265150	23265278	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23265279	23265399	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23265400	23265477	1	+	0	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23265400	23265477	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	intron	23265478	23265567	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	CDS	23265568	23265837	0.99	+	0	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	exon	23265568	23265837	.	+	.	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
Ledus.S1	AUGUSTUS	stop_codon	23265838	23265840	.	+	0	transcript_id "Ledus.S1G273300.t1"; gene_id "Ledus.S1G273300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11974.t1 is derived from g5593.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8236281	8237157	.	+	.	Ledus.S4G113000
Ledus.S4	AUGUSTUS	transcript	8236335	8237157	.	+	.	transcript_id "Ledus.S4G113000.t1"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	start_codon	8236335	8236337	.	+	0	transcript_id "Ledus.S4G113000.t1"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	CDS	8236335	8236625	0.56	+	0	transcript_id "Ledus.S4G113000.t1"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	exon	8236335	8236625	.	+	.	transcript_id "Ledus.S4G113000.t1"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	intron	8236626	8236713	.	+	.	transcript_id "Ledus.S4G113000.t1"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	CDS	8236714	8237157	0.59	+	0	transcript_id "Ledus.S4G113000.t1"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	exon	8236714	8237157	.	+	.	transcript_id "Ledus.S4G113000.t1"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	stop_codon	8237158	8237160	.	+	0	transcript_id "Ledus.S4G113000.t1"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	transcript	8236281	8237157	.	+	.	transcript_id "Ledus.S4G113000.t2"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	start_codon	8236281	8236283	.	+	0	transcript_id "Ledus.S4G113000.t2"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	CDS	8236281	8236625	0.36	+	0	transcript_id "Ledus.S4G113000.t2"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	exon	8236281	8236625	.	+	.	transcript_id "Ledus.S4G113000.t2"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	intron	8236626	8236713	.	+	.	transcript_id "Ledus.S4G113000.t2"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	CDS	8236714	8237157	0.61	+	0	transcript_id "Ledus.S4G113000.t2"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	exon	8236714	8237157	.	+	.	transcript_id "Ledus.S4G113000.t2"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	stop_codon	8237158	8237160	.	+	0	transcript_id "Ledus.S4G113000.t2"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	transcript	8236281	8236727	.	+	.	transcript_id "Ledus.S4G113000.t3"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	start_codon	8236281	8236283	.	+	0	transcript_id "Ledus.S4G113000.t3"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	CDS	8236281	8236727	0.71	+	0	transcript_id "Ledus.S4G113000.t3"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	exon	8236281	8236727	.	+	.	transcript_id "Ledus.S4G113000.t3"; gene_id "Ledus.S4G113000"
Ledus.S4	AUGUSTUS	stop_codon	8236728	8236730	.	+	0	transcript_id "Ledus.S4G113000.t3"; gene_id "Ledus.S4G113000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12598.t1 is derived from g6220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13037610	13040770	.	-	.	Ledus.S4G175400
Ledus.S4	AUGUSTUS	transcript	13037610	13040770	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	stop_codon	13037607	13037609	.	-	0	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13037610	13037996	1	-	0	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13037610	13037996	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13037997	13038090	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13038091	13038234	1	-	0	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13038091	13038234	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13038235	13038354	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13038355	13038474	0.98	-	0	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13038355	13038474	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13038475	13038615	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13038616	13038668	1	-	2	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13038616	13038668	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13038669	13038797	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13038798	13038864	1	-	0	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13038798	13038864	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13038865	13038953	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13038954	13039026	1	-	1	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13038954	13039026	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13039027	13039169	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13039170	13039211	1	-	1	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13039170	13039211	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13039212	13039306	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13039307	13039356	0.99	-	0	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13039307	13039356	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13039357	13039470	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13039471	13039535	1	-	2	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13039471	13039535	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13039536	13039789	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13039790	13039922	1	-	0	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13039790	13039922	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13039923	13040155	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13040156	13040243	1	-	1	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13040156	13040243	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13040244	13040326	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13040327	13040403	1	-	0	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13040327	13040403	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13040404	13040539	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13040540	13040611	1	-	0	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13040540	13040611	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	intron	13040612	13040713	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	CDS	13040714	13040770	0.94	-	0	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	exon	13040714	13040770	.	-	.	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
Ledus.S4	AUGUSTUS	start_codon	13040768	13040770	.	-	0	transcript_id "Ledus.S4G175400.t1"; gene_id "Ledus.S4G175400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1555.t1 is derived from g8416.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10908670	10909095	.	+	.	Ledus.S2G143700
Ledus.S2	AUGUSTUS	transcript	10908670	10909095	.	+	.	transcript_id "Ledus.S2G143700.t1"; gene_id "Ledus.S2G143700"
Ledus.S2	AUGUSTUS	start_codon	10908670	10908672	.	+	0	transcript_id "Ledus.S2G143700.t1"; gene_id "Ledus.S2G143700"
Ledus.S2	AUGUSTUS	CDS	10908670	10909095	1	+	0	transcript_id "Ledus.S2G143700.t1"; gene_id "Ledus.S2G143700"
Ledus.S2	AUGUSTUS	exon	10908670	10909095	.	+	.	transcript_id "Ledus.S2G143700.t1"; gene_id "Ledus.S2G143700"
Ledus.S2	AUGUSTUS	stop_codon	10909096	10909098	.	+	0	transcript_id "Ledus.S2G143700.t1"; gene_id "Ledus.S2G143700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg231.t1 is derived from g7092.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1014506	1015012	.	+	.	Ledus.S2G011300
Ledus.S2	AUGUSTUS	transcript	1014506	1015012	.	+	.	transcript_id "Ledus.S2G011300.t1"; gene_id "Ledus.S2G011300"
Ledus.S2	AUGUSTUS	start_codon	1014506	1014508	.	+	0	transcript_id "Ledus.S2G011300.t1"; gene_id "Ledus.S2G011300"
Ledus.S2	AUGUSTUS	CDS	1014506	1014656	0.74	+	0	transcript_id "Ledus.S2G011300.t1"; gene_id "Ledus.S2G011300"
Ledus.S2	AUGUSTUS	exon	1014506	1014656	.	+	.	transcript_id "Ledus.S2G011300.t1"; gene_id "Ledus.S2G011300"
Ledus.S2	AUGUSTUS	intron	1014657	1014728	.	+	.	transcript_id "Ledus.S2G011300.t1"; gene_id "Ledus.S2G011300"
Ledus.S2	AUGUSTUS	CDS	1014729	1015012	0.44	+	2	transcript_id "Ledus.S2G011300.t1"; gene_id "Ledus.S2G011300"
Ledus.S2	AUGUSTUS	exon	1014729	1015012	.	+	.	transcript_id "Ledus.S2G011300.t1"; gene_id "Ledus.S2G011300"
Ledus.S2	AUGUSTUS	stop_codon	1015013	1015015	.	+	0	transcript_id "Ledus.S2G011300.t1"; gene_id "Ledus.S2G011300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1022.t1 is derived from g7883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6798057	6801625	.	+	.	Ledus.S2G090400
Ledus.S2	AUGUSTUS	transcript	6798057	6801625	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	start_codon	6798057	6798059	.	+	0	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	CDS	6798057	6798276	0.98	+	0	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	exon	6798057	6798276	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	intron	6798277	6798363	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	CDS	6798364	6798509	1	+	2	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	exon	6798364	6798509	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	intron	6798510	6798589	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	CDS	6798590	6798727	1	+	0	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	exon	6798590	6798727	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	intron	6798728	6798821	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	CDS	6798822	6798932	1	+	0	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	exon	6798822	6798932	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	intron	6798933	6799030	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	CDS	6799031	6799158	0.81	+	0	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	exon	6799031	6799158	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	intron	6799159	6799241	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	CDS	6799242	6799292	0.81	+	1	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	exon	6799242	6799292	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	intron	6799293	6799423	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	CDS	6799424	6799621	0.65	+	1	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	exon	6799424	6799621	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	intron	6799622	6799742	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	CDS	6799743	6800079	0.99	+	1	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	exon	6799743	6800079	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	intron	6800080	6800261	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	CDS	6800262	6800378	0.98	+	0	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	exon	6800262	6800378	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	intron	6800379	6800480	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	CDS	6800481	6800657	0.99	+	0	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	exon	6800481	6800657	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	intron	6800658	6800730	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	CDS	6800731	6801264	0.83	+	0	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	exon	6800731	6801264	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	intron	6801265	6801367	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	CDS	6801368	6801625	0.72	+	0	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	exon	6801368	6801625	.	+	.	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
Ledus.S2	AUGUSTUS	stop_codon	6801626	6801628	.	+	0	transcript_id "Ledus.S2G090400.t1"; gene_id "Ledus.S2G090400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2901.t1 is derived from g336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4479994	4482625	.	+	.	Ledus.S1G032200
Ledus.S1	AUGUSTUS	transcript	4479994	4482625	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	start_codon	4479994	4479996	.	+	0	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4479994	4480039	0.86	+	0	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4479994	4480039	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	intron	4480040	4480126	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4480127	4480240	1	+	2	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4480127	4480240	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	intron	4480241	4480325	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4480326	4480388	0.99	+	2	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4480326	4480388	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	intron	4480389	4480473	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4480474	4480705	0.99	+	2	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4480474	4480705	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	intron	4480706	4480785	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4480786	4480845	1	+	1	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4480786	4480845	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	intron	4480846	4480933	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4480934	4481210	1	+	1	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4480934	4481210	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	intron	4481211	4481288	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4481289	4481419	1	+	0	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4481289	4481419	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	intron	4481420	4481516	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4481517	4481615	1	+	1	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4481517	4481615	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	intron	4481616	4481738	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4481739	4481790	0.96	+	1	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4481739	4481790	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	intron	4481791	4481871	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4481872	4482049	1	+	0	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4481872	4482049	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	intron	4482050	4482131	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4482132	4482193	0.95	+	2	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4482132	4482193	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	intron	4482194	4482283	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4482284	4482460	1	+	0	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4482284	4482460	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	intron	4482461	4482550	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	CDS	4482551	4482625	1	+	0	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	exon	4482551	4482625	.	+	.	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
Ledus.S1	AUGUSTUS	stop_codon	4482626	4482628	.	+	0	transcript_id "Ledus.S1G032200.t1"; gene_id "Ledus.S1G032200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3749.t1 is derived from g1185.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11561546	11563369	.	-	.	Ledus.S1G117000
Ledus.S1	AUGUSTUS	transcript	11562445	11563369	.	-	.	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	stop_codon	11562442	11562444	.	-	0	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	CDS	11562445	11562480	0.85	-	0	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	exon	11562445	11562480	.	-	.	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	intron	11562481	11562652	.	-	.	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	CDS	11562653	11562665	0.81	-	1	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	exon	11562653	11562665	.	-	.	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	intron	11562666	11562792	.	-	.	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	CDS	11562793	11562874	0.55	-	2	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	exon	11562793	11562874	.	-	.	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	intron	11562875	11563086	.	-	.	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	CDS	11563087	11563135	0.71	-	0	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	exon	11563087	11563135	.	-	.	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	intron	11563136	11563231	.	-	.	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	CDS	11563232	11563369	0.31	-	0	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	exon	11563232	11563369	.	-	.	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	start_codon	11563367	11563369	.	-	0	transcript_id "Ledus.S1G117000.t1"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	transcript	11561546	11563369	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	stop_codon	11561543	11561545	.	-	0	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	CDS	11561546	11561548	0.93	-	0	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	exon	11561546	11561548	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	intron	11561549	11561811	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	CDS	11561812	11561837	0.76	-	2	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	exon	11561812	11561837	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	intron	11561838	11561900	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	CDS	11561901	11561931	0.76	-	0	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	exon	11561901	11561931	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	intron	11561932	11562087	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	CDS	11562088	11562124	0.27	-	1	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	exon	11562088	11562124	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	intron	11562125	11562473	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	CDS	11562474	11562480	0.51	-	2	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	exon	11562474	11562480	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	intron	11562481	11563092	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	CDS	11563093	11563135	0.82	-	0	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	exon	11563093	11563135	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	intron	11563136	11563231	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	CDS	11563232	11563369	0.28	-	0	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	exon	11563232	11563369	.	-	.	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
Ledus.S1	AUGUSTUS	start_codon	11563367	11563369	.	-	0	transcript_id "Ledus.S1G117000.t2"; gene_id "Ledus.S1G117000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3169.t1 is derived from g604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6550353	6551909	.	+	.	Ledus.S1G059000
Ledus.S1	AUGUSTUS	transcript	6550353	6551909	.	+	.	transcript_id "Ledus.S1G059000.t1"; gene_id "Ledus.S1G059000"
Ledus.S1	AUGUSTUS	start_codon	6550353	6550355	.	+	0	transcript_id "Ledus.S1G059000.t1"; gene_id "Ledus.S1G059000"
Ledus.S1	AUGUSTUS	CDS	6550353	6551909	0.82	+	0	transcript_id "Ledus.S1G059000.t1"; gene_id "Ledus.S1G059000"
Ledus.S1	AUGUSTUS	exon	6550353	6551909	.	+	.	transcript_id "Ledus.S1G059000.t1"; gene_id "Ledus.S1G059000"
Ledus.S1	AUGUSTUS	stop_codon	6551910	6551912	.	+	0	transcript_id "Ledus.S1G059000.t1"; gene_id "Ledus.S1G059000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12613.t1 is derived from g6235.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13234661	13236405	.	+	.	Ledus.S4G176900
Ledus.S4	AUGUSTUS	transcript	13234661	13236405	.	+	.	transcript_id "Ledus.S4G176900.t1"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	start_codon	13234661	13234663	.	+	0	transcript_id "Ledus.S4G176900.t1"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	CDS	13234661	13234729	0.76	+	0	transcript_id "Ledus.S4G176900.t1"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	exon	13234661	13234729	.	+	.	transcript_id "Ledus.S4G176900.t1"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	intron	13234730	13234980	.	+	.	transcript_id "Ledus.S4G176900.t1"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	CDS	13234981	13235061	0.7	+	0	transcript_id "Ledus.S4G176900.t1"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	exon	13234981	13235061	.	+	.	transcript_id "Ledus.S4G176900.t1"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	intron	13235062	13235193	.	+	.	transcript_id "Ledus.S4G176900.t1"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	CDS	13235194	13236405	0.71	+	0	transcript_id "Ledus.S4G176900.t1"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	exon	13235194	13236405	.	+	.	transcript_id "Ledus.S4G176900.t1"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	stop_codon	13236406	13236408	.	+	0	transcript_id "Ledus.S4G176900.t1"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	transcript	13235797	13236405	.	+	.	transcript_id "Ledus.S4G176900.t2"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	start_codon	13235797	13235799	.	+	0	transcript_id "Ledus.S4G176900.t2"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	CDS	13235797	13236405	1	+	0	transcript_id "Ledus.S4G176900.t2"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	exon	13235797	13236405	.	+	.	transcript_id "Ledus.S4G176900.t2"; gene_id "Ledus.S4G176900"
Ledus.S4	AUGUSTUS	stop_codon	13236406	13236408	.	+	0	transcript_id "Ledus.S4G176900.t2"; gene_id "Ledus.S4G176900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg216.t1 is derived from g7077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	945487	946465	.	-	.	Ledus.S2G009800
Ledus.S2	AUGUSTUS	transcript	945487	946465	.	-	.	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	stop_codon	945484	945486	.	-	0	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	CDS	945487	945552	0.93	-	0	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	exon	945487	945552	.	-	.	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	intron	945553	945707	.	-	.	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	CDS	945708	945767	0.98	-	0	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	exon	945708	945767	.	-	.	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	intron	945768	945875	.	-	.	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	CDS	945876	945942	1	-	1	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	exon	945876	945942	.	-	.	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	intron	945943	946031	.	-	.	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	CDS	946032	946084	1	-	0	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	exon	946032	946084	.	-	.	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	intron	946085	946306	.	-	.	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	CDS	946307	946465	1	-	0	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	exon	946307	946465	.	-	.	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
Ledus.S2	AUGUSTUS	start_codon	946463	946465	.	-	0	transcript_id "Ledus.S2G009800.t1"; gene_id "Ledus.S2G009800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg2369.t1 is derived from g9232.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17630877	17637208	.	-	.	Ledus.S2G225100
Ledus.S2	AUGUSTUS	transcript	17630877	17637208	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	stop_codon	17630874	17630876	.	-	0	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17630877	17631007	0.61	-	2	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17630877	17631007	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17631008	17631106	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17631107	17631532	0.53	-	2	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17631107	17631532	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17631533	17631878	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17631879	17634030	0.99	-	0	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17631879	17634030	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17634031	17634227	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17634228	17635811	1	-	0	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17634228	17635811	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17635812	17635911	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17635912	17636029	1	-	1	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17635912	17636029	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636030	17636211	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17636212	17636317	1	-	2	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17636212	17636317	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636318	17636477	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17636478	17636625	0.9	-	0	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17636478	17636625	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636626	17636711	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17636712	17636869	0.96	-	2	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17636712	17636869	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636870	17637009	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17637010	17637208	0.48	-	0	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17637010	17637208	.	-	.	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	start_codon	17637206	17637208	.	-	0	transcript_id "Ledus.S2G225100.t1"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	transcript	17630877	17637208	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	stop_codon	17630874	17630876	.	-	0	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17630877	17631007	0.57	-	2	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17630877	17631007	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17631008	17631106	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17631107	17631535	0.48	-	2	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17631107	17631535	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17631536	17631878	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17631879	17634030	0.99	-	0	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17631879	17634030	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17634031	17634227	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17634228	17635811	0.99	-	0	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17634228	17635811	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17635812	17635911	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17635912	17636029	1	-	1	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17635912	17636029	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636030	17636211	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17636212	17636317	1	-	2	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17636212	17636317	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636318	17636477	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17636478	17636625	0.86	-	0	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17636478	17636625	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636626	17636711	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17636712	17636869	0.97	-	2	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17636712	17636869	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636870	17637009	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17637010	17637208	0.55	-	0	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17637010	17637208	.	-	.	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	start_codon	17637206	17637208	.	-	0	transcript_id "Ledus.S2G225100.t2"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	transcript	17630877	17637208	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	stop_codon	17630874	17630876	.	-	0	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17630877	17631007	0.62	-	2	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17630877	17631007	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17631008	17631106	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17631107	17631535	0.38	-	2	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17631107	17631535	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17631536	17631848	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17631849	17634030	0.76	-	0	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17631849	17634030	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17634031	17634227	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17634228	17635811	1	-	0	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17634228	17635811	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17635812	17635911	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17635912	17636029	1	-	1	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17635912	17636029	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636030	17636211	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17636212	17636317	1	-	2	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17636212	17636317	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636318	17636477	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17636478	17636625	0.91	-	0	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17636478	17636625	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636626	17636711	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17636712	17636869	0.96	-	2	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17636712	17636869	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636870	17637009	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17637010	17637208	0.49	-	0	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17637010	17637208	.	-	.	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	start_codon	17637206	17637208	.	-	0	transcript_id "Ledus.S2G225100.t3"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	transcript	17630877	17637208	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	stop_codon	17630874	17630876	.	-	0	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17630877	17631007	0.71	-	2	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17630877	17631007	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17631008	17631106	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17631107	17631535	0.56	-	2	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17631107	17631535	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17631536	17631697	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17631698	17631731	0.41	-	0	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17631698	17631731	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17631732	17631828	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17631829	17634030	0.33	-	0	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17631829	17634030	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17634031	17634227	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17634228	17635811	1	-	0	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17634228	17635811	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17635812	17635911	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17635912	17636029	1	-	1	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17635912	17636029	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636030	17636211	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17636212	17636317	1	-	2	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17636212	17636317	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636318	17636477	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17636478	17636625	0.87	-	0	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17636478	17636625	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636626	17636711	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17636712	17636869	0.95	-	2	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17636712	17636869	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	intron	17636870	17637009	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	CDS	17637010	17637208	0.43	-	0	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	exon	17637010	17637208	.	-	.	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
Ledus.S2	AUGUSTUS	start_codon	17637206	17637208	.	-	0	transcript_id "Ledus.S2G225100.t4"; gene_id "Ledus.S2G225100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11625.t1 is derived from g5243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5618943	5619338	.	-	.	Ledus.S4G078100
Ledus.S4	AUGUSTUS	transcript	5618943	5619338	.	-	.	transcript_id "Ledus.S4G078100.t1"; gene_id "Ledus.S4G078100"
Ledus.S4	AUGUSTUS	stop_codon	5618940	5618942	.	-	0	transcript_id "Ledus.S4G078100.t1"; gene_id "Ledus.S4G078100"
Ledus.S4	AUGUSTUS	CDS	5618943	5619338	0.94	-	0	transcript_id "Ledus.S4G078100.t1"; gene_id "Ledus.S4G078100"
Ledus.S4	AUGUSTUS	exon	5618943	5619338	.	-	.	transcript_id "Ledus.S4G078100.t1"; gene_id "Ledus.S4G078100"
Ledus.S4	AUGUSTUS	start_codon	5619336	5619338	.	-	0	transcript_id "Ledus.S4G078100.t1"; gene_id "Ledus.S4G078100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12513.t1 is derived from g6134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12582791	12587488	.	+	.	Ledus.S4G166900
Ledus.S4	AUGUSTUS	transcript	12582791	12587488	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	start_codon	12582791	12582793	.	+	0	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12582791	12583070	0.56	+	0	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12582791	12583070	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12583071	12583401	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12583402	12583529	0.53	+	2	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12583402	12583529	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12583530	12583715	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12583716	12583775	0.82	+	0	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12583716	12583775	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12583776	12583881	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12583882	12583953	1	+	0	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12583882	12583953	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12583954	12584042	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12584043	12584164	1	+	0	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12584043	12584164	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12584165	12584264	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12584265	12584405	1	+	1	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12584265	12584405	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12584406	12584508	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12584509	12584619	0.99	+	1	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12584509	12584619	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12584620	12584874	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12584875	12585154	0.99	+	1	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12584875	12585154	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12585155	12585311	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12585312	12585568	0.49	+	0	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12585312	12585568	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12585569	12585960	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12585961	12586097	0.31	+	1	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12585961	12586097	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12586098	12586499	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12586500	12586697	1	+	2	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12586500	12586697	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12586698	12586852	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12586853	12586908	1	+	2	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12586853	12586908	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12586909	12587000	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12587001	12587055	1	+	0	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12587001	12587055	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12587056	12587138	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12587139	12587219	1	+	2	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12587139	12587219	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	intron	12587220	12587303	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	CDS	12587304	12587488	0.99	+	2	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	exon	12587304	12587488	.	+	.	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
Ledus.S4	AUGUSTUS	stop_codon	12587489	12587491	.	+	0	transcript_id "Ledus.S4G166900.t1"; gene_id "Ledus.S4G166900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12096.t1 is derived from g5715.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9485833	9486438	.	+	.	Ledus.S4G125200
Ledus.S4	AUGUSTUS	transcript	9485833	9486438	.	+	.	transcript_id "Ledus.S4G125200.t1"; gene_id "Ledus.S4G125200"
Ledus.S4	AUGUSTUS	start_codon	9485833	9485835	.	+	0	transcript_id "Ledus.S4G125200.t1"; gene_id "Ledus.S4G125200"
Ledus.S4	AUGUSTUS	CDS	9485833	9486438	0.83	+	0	transcript_id "Ledus.S4G125200.t1"; gene_id "Ledus.S4G125200"
Ledus.S4	AUGUSTUS	exon	9485833	9486438	.	+	.	transcript_id "Ledus.S4G125200.t1"; gene_id "Ledus.S4G125200"
Ledus.S4	AUGUSTUS	stop_codon	9486439	9486441	.	+	0	transcript_id "Ledus.S4G125200.t1"; gene_id "Ledus.S4G125200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg165.t1 is derived from g7026.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	489281	495663	.	+	.	Ledus.S2G004700
Ledus.S2	AUGUSTUS	transcript	489281	495663	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	start_codon	489281	489283	.	+	0	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	489281	490758	0.78	+	0	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	489281	490758	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	490759	490938	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	490939	490997	1	+	1	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	490939	490997	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	490998	491369	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	491370	492128	1	+	2	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	491370	492128	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	492129	492219	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	492220	493448	1	+	2	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	492220	493448	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	493449	493540	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	493541	493649	1	+	0	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	493541	493649	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	493650	493801	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	493802	493991	1	+	2	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	493802	493991	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	493992	494140	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	494141	494208	1	+	1	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	494141	494208	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	494209	494282	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	494283	494380	1	+	2	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	494283	494380	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	494381	494455	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	494456	495340	1	+	0	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	494456	495340	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	495341	495654	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	495655	495663	1	+	0	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	495655	495663	.	+	.	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	stop_codon	495664	495666	.	+	0	transcript_id "Ledus.S2G004700.t1"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	transcript	489281	495663	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	start_codon	489281	489283	.	+	0	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	489281	490758	0.81	+	0	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	489281	490758	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	490759	490938	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	490939	490997	1	+	1	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	490939	490997	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	490998	491369	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	491370	492128	0.99	+	2	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	491370	492128	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	492129	492222	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	492223	493448	0.99	+	2	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	492223	493448	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	493449	493540	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	493541	493649	1	+	0	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	493541	493649	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	493650	493801	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	493802	493991	1	+	2	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	493802	493991	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	493992	494140	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	494141	494208	1	+	1	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	494141	494208	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	494209	494282	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	494283	494380	1	+	2	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	494283	494380	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	494381	494455	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	494456	495340	0.98	+	0	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	494456	495340	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	495341	495654	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	495655	495663	1	+	0	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	495655	495663	.	+	.	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	stop_codon	495664	495666	.	+	0	transcript_id "Ledus.S2G004700.t2"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	transcript	489281	495592	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	start_codon	489281	489283	.	+	0	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	489281	490758	0.75	+	0	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	489281	490758	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	490759	490938	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	490939	490997	1	+	1	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	490939	490997	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	490998	491369	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	491370	492128	1	+	2	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	491370	492128	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	492129	492219	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	492220	493448	0.99	+	2	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	492220	493448	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	493449	493540	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	493541	493649	1	+	0	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	493541	493649	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	493650	493801	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	493802	493991	1	+	2	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	493802	493991	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	493992	494140	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	494141	494208	1	+	1	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	494141	494208	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	494209	494282	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	494283	494380	1	+	2	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	494283	494380	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	494381	494455	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	494456	495340	0.91	+	0	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	494456	495340	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	intron	495341	495466	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	CDS	495467	495592	0.82	+	0	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	exon	495467	495592	.	+	.	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
Ledus.S2	AUGUSTUS	stop_codon	495593	495595	.	+	0	transcript_id "Ledus.S2G004700.t3"; gene_id "Ledus.S2G004700"
# This transcript jg2063.t2 is derived from g8926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2064.t1 is derived from g8927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14415061	14418934	.	+	.	Ledus.S2G194600
Ledus.S2	AUGUSTUS	transcript	14415061	14418934	.	+	.	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	start_codon	14415061	14415063	.	+	0	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	CDS	14415061	14415078	1	+	0	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	exon	14415061	14415078	.	+	.	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	intron	14415079	14415170	.	+	.	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	CDS	14415171	14415236	1	+	0	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	exon	14415171	14415236	.	+	.	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	intron	14415237	14415365	.	+	.	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	CDS	14415366	14415418	1	+	0	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	exon	14415366	14415418	.	+	.	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	intron	14415419	14415528	.	+	.	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	CDS	14415529	14415637	1	+	1	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	exon	14415529	14415637	.	+	.	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	intron	14415638	14415733	.	+	.	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	CDS	14415734	14418718	0.92	+	0	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	exon	14415734	14418718	.	+	.	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	intron	14418719	14418841	.	+	.	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	CDS	14418842	14418934	0.92	+	0	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	exon	14418842	14418934	.	+	.	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
Ledus.S2	AUGUSTUS	stop_codon	14418935	14418937	.	+	0	transcript_id "Ledus.S2G194600.t1"; gene_id "Ledus.S2G194600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7396.t1 is derived from g12067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2065694	2065987	.	-	.	Ledus.S5G017400
Ledus.S5	AUGUSTUS	transcript	2065694	2065987	.	-	.	transcript_id "Ledus.S5G017400.t1"; gene_id "Ledus.S5G017400"
Ledus.S5	AUGUSTUS	stop_codon	2065691	2065693	.	-	0	transcript_id "Ledus.S5G017400.t1"; gene_id "Ledus.S5G017400"
Ledus.S5	AUGUSTUS	CDS	2065694	2065987	0.6	-	0	transcript_id "Ledus.S5G017400.t1"; gene_id "Ledus.S5G017400"
Ledus.S5	AUGUSTUS	exon	2065694	2065987	.	-	.	transcript_id "Ledus.S5G017400.t1"; gene_id "Ledus.S5G017400"
Ledus.S5	AUGUSTUS	start_codon	2065985	2065987	.	-	0	transcript_id "Ledus.S5G017400.t1"; gene_id "Ledus.S5G017400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6901.t1 is derived from g4345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35081358	35082744	.	-	.	Ledus.S1G432200
Ledus.S1	AUGUSTUS	transcript	35081358	35082744	.	-	.	transcript_id "Ledus.S1G432200.t1"; gene_id "Ledus.S1G432200"
Ledus.S1	AUGUSTUS	stop_codon	35081355	35081357	.	-	0	transcript_id "Ledus.S1G432200.t1"; gene_id "Ledus.S1G432200"
Ledus.S1	AUGUSTUS	CDS	35081358	35081651	1	-	0	transcript_id "Ledus.S1G432200.t1"; gene_id "Ledus.S1G432200"
Ledus.S1	AUGUSTUS	exon	35081358	35081651	.	-	.	transcript_id "Ledus.S1G432200.t1"; gene_id "Ledus.S1G432200"
Ledus.S1	AUGUSTUS	intron	35081652	35081756	.	-	.	transcript_id "Ledus.S1G432200.t1"; gene_id "Ledus.S1G432200"
Ledus.S1	AUGUSTUS	CDS	35081757	35082131	1	-	0	transcript_id "Ledus.S1G432200.t1"; gene_id "Ledus.S1G432200"
Ledus.S1	AUGUSTUS	exon	35081757	35082131	.	-	.	transcript_id "Ledus.S1G432200.t1"; gene_id "Ledus.S1G432200"
Ledus.S1	AUGUSTUS	intron	35082132	35082243	.	-	.	transcript_id "Ledus.S1G432200.t1"; gene_id "Ledus.S1G432200"
Ledus.S1	AUGUSTUS	CDS	35082244	35082744	0.92	-	0	transcript_id "Ledus.S1G432200.t1"; gene_id "Ledus.S1G432200"
Ledus.S1	AUGUSTUS	exon	35082244	35082744	.	-	.	transcript_id "Ledus.S1G432200.t1"; gene_id "Ledus.S1G432200"
Ledus.S1	AUGUSTUS	start_codon	35082742	35082744	.	-	0	transcript_id "Ledus.S1G432200.t1"; gene_id "Ledus.S1G432200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4043.t1 is derived from g1479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14298213	14301518	.	-	.	Ledus.S1G146400
Ledus.S1	AUGUSTUS	transcript	14298213	14301518	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	stop_codon	14298210	14298212	.	-	0	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	CDS	14298213	14298378	0.97	-	1	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	exon	14298213	14298378	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	intron	14298379	14298462	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	CDS	14298463	14298653	0.97	-	0	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	exon	14298463	14298653	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	intron	14298654	14298740	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	CDS	14298741	14298908	1	-	0	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	exon	14298741	14298908	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	intron	14298909	14299003	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	CDS	14299004	14299171	1	-	0	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	exon	14299004	14299171	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	intron	14299172	14299269	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	CDS	14299270	14299477	1	-	1	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	exon	14299270	14299477	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	intron	14299478	14299566	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	CDS	14299567	14299761	1	-	1	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	exon	14299567	14299761	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	intron	14299762	14299855	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	CDS	14299856	14299944	1	-	0	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	exon	14299856	14299944	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	intron	14299945	14300076	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	CDS	14300077	14300144	1	-	2	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	exon	14300077	14300144	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	intron	14300145	14300232	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	CDS	14300233	14300311	1	-	0	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	exon	14300233	14300311	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	intron	14300312	14300388	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	CDS	14300389	14301097	0.39	-	1	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	exon	14300389	14301097	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	intron	14301098	14301324	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	CDS	14301325	14301518	0.59	-	0	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	exon	14301325	14301518	.	-	.	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
Ledus.S1	AUGUSTUS	start_codon	14301516	14301518	.	-	0	transcript_id "Ledus.S1G146400.t1"; gene_id "Ledus.S1G146400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1089.t1 is derived from g7950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7459504	7461284	.	-	.	Ledus.S2G097100
Ledus.S2	AUGUSTUS	transcript	7459504	7461284	.	-	.	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	stop_codon	7459501	7459503	.	-	0	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	CDS	7459504	7459659	0.58	-	0	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	exon	7459504	7459659	.	-	.	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	intron	7459660	7459796	.	-	.	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	CDS	7459797	7459973	0.87	-	0	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	exon	7459797	7459973	.	-	.	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	intron	7459974	7460062	.	-	.	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	CDS	7460063	7460206	0.86	-	0	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	exon	7460063	7460206	.	-	.	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	intron	7460207	7460319	.	-	.	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	CDS	7460320	7460443	1	-	1	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	exon	7460320	7460443	.	-	.	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	intron	7460444	7460683	.	-	.	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	CDS	7460684	7461132	0.98	-	0	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	exon	7460684	7461132	.	-	.	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	intron	7461133	7461257	.	-	.	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	CDS	7461258	7461284	0.94	-	0	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	exon	7461258	7461284	.	-	.	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
Ledus.S2	AUGUSTUS	start_codon	7461282	7461284	.	-	0	transcript_id "Ledus.S2G097100.t1"; gene_id "Ledus.S2G097100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2635.t1 is derived from g68.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	953755	954592	.	+	.	Ledus.S1G005600
Ledus.S1	AUGUSTUS	transcript	953755	954592	.	+	.	transcript_id "Ledus.S1G005600.t1"; gene_id "Ledus.S1G005600"
Ledus.S1	AUGUSTUS	start_codon	953755	953757	.	+	0	transcript_id "Ledus.S1G005600.t1"; gene_id "Ledus.S1G005600"
Ledus.S1	AUGUSTUS	CDS	953755	954035	0.92	+	0	transcript_id "Ledus.S1G005600.t1"; gene_id "Ledus.S1G005600"
Ledus.S1	AUGUSTUS	exon	953755	954035	.	+	.	transcript_id "Ledus.S1G005600.t1"; gene_id "Ledus.S1G005600"
Ledus.S1	AUGUSTUS	intron	954036	954135	.	+	.	transcript_id "Ledus.S1G005600.t1"; gene_id "Ledus.S1G005600"
Ledus.S1	AUGUSTUS	CDS	954136	954279	0.29	+	1	transcript_id "Ledus.S1G005600.t1"; gene_id "Ledus.S1G005600"
Ledus.S1	AUGUSTUS	exon	954136	954279	.	+	.	transcript_id "Ledus.S1G005600.t1"; gene_id "Ledus.S1G005600"
Ledus.S1	AUGUSTUS	intron	954280	954414	.	+	.	transcript_id "Ledus.S1G005600.t1"; gene_id "Ledus.S1G005600"
Ledus.S1	AUGUSTUS	CDS	954415	954592	0.47	+	1	transcript_id "Ledus.S1G005600.t1"; gene_id "Ledus.S1G005600"
Ledus.S1	AUGUSTUS	exon	954415	954592	.	+	.	transcript_id "Ledus.S1G005600.t1"; gene_id "Ledus.S1G005600"
Ledus.S1	AUGUSTUS	stop_codon	954593	954595	.	+	0	transcript_id "Ledus.S1G005600.t1"; gene_id "Ledus.S1G005600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12762.t1 is derived from g6384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14350113	14351079	.	+	.	Ledus.S4G191800
Ledus.S4	AUGUSTUS	transcript	14350113	14351079	.	+	.	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	start_codon	14350113	14350115	.	+	0	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	CDS	14350113	14350146	0.87	+	0	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	exon	14350113	14350146	.	+	.	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	intron	14350147	14350309	.	+	.	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	CDS	14350310	14350433	1	+	2	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	exon	14350310	14350433	.	+	.	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	intron	14350434	14350535	.	+	.	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	CDS	14350536	14350764	1	+	1	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	exon	14350536	14350764	.	+	.	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	intron	14350765	14351055	.	+	.	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	CDS	14351056	14351079	0.99	+	0	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	exon	14351056	14351079	.	+	.	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
Ledus.S4	AUGUSTUS	stop_codon	14351080	14351082	.	+	0	transcript_id "Ledus.S4G191800.t1"; gene_id "Ledus.S4G191800"
# This transcript jg10322.t2 is derived from g11352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10323.t1 is derived from g11353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14227358	14228544	.	+	.	Ledus.S3G180000
Ledus.S3	AUGUSTUS	transcript	14227358	14228544	.	+	.	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	start_codon	14227358	14227360	.	+	0	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	CDS	14227358	14227406	1	+	0	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	exon	14227358	14227406	.	+	.	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	intron	14227407	14227501	.	+	.	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	CDS	14227502	14227604	1	+	2	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	exon	14227502	14227604	.	+	.	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	intron	14227605	14227683	.	+	.	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	CDS	14227684	14227730	1	+	1	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	exon	14227684	14227730	.	+	.	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	intron	14227731	14227825	.	+	.	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	CDS	14227826	14228544	1	+	2	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	exon	14227826	14228544	.	+	.	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
Ledus.S3	AUGUSTUS	stop_codon	14228545	14228547	.	+	0	transcript_id "Ledus.S3G180000.t1"; gene_id "Ledus.S3G180000"
# This transcript jg11319.t2 is derived from g4937.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11319.t3 is derived from g4937.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11320.t1 is derived from g4938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3576035	3577740	.	+	.	Ledus.S4G047600
Ledus.S4	AUGUSTUS	transcript	3577232	3577740	.	+	.	transcript_id "Ledus.S4G047600.t1"; gene_id "Ledus.S4G047600"
Ledus.S4	AUGUSTUS	start_codon	3577232	3577234	.	+	0	transcript_id "Ledus.S4G047600.t1"; gene_id "Ledus.S4G047600"
Ledus.S4	AUGUSTUS	CDS	3577232	3577488	0.31	+	0	transcript_id "Ledus.S4G047600.t1"; gene_id "Ledus.S4G047600"
Ledus.S4	AUGUSTUS	exon	3577232	3577488	.	+	.	transcript_id "Ledus.S4G047600.t1"; gene_id "Ledus.S4G047600"
Ledus.S4	AUGUSTUS	intron	3577489	3577640	.	+	.	transcript_id "Ledus.S4G047600.t1"; gene_id "Ledus.S4G047600"
Ledus.S4	AUGUSTUS	CDS	3577641	3577740	0.75	+	1	transcript_id "Ledus.S4G047600.t1"; gene_id "Ledus.S4G047600"
Ledus.S4	AUGUSTUS	exon	3577641	3577740	.	+	.	transcript_id "Ledus.S4G047600.t1"; gene_id "Ledus.S4G047600"
Ledus.S4	AUGUSTUS	stop_codon	3577741	3577743	.	+	0	transcript_id "Ledus.S4G047600.t1"; gene_id "Ledus.S4G047600"
Ledus.S4	AUGUSTUS	transcript	3576035	3577489	.	+	.	transcript_id "Ledus.S4G047600.t2"; gene_id "Ledus.S4G047600"
Ledus.S4	AUGUSTUS	start_codon	3576035	3576037	.	+	0	transcript_id "Ledus.S4G047600.t2"; gene_id "Ledus.S4G047600"
Ledus.S4	AUGUSTUS	CDS	3576035	3577489	0.52	+	0	transcript_id "Ledus.S4G047600.t2"; gene_id "Ledus.S4G047600"
Ledus.S4	AUGUSTUS	exon	3576035	3577489	.	+	.	transcript_id "Ledus.S4G047600.t2"; gene_id "Ledus.S4G047600"
Ledus.S4	AUGUSTUS	stop_codon	3577490	3577492	.	+	0	transcript_id "Ledus.S4G047600.t2"; gene_id "Ledus.S4G047600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1847.t1 is derived from g8710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12932816	12933109	.	-	.	Ledus.S2G172900
Ledus.S2	AUGUSTUS	transcript	12932816	12933109	.	-	.	transcript_id "Ledus.S2G172900.t1"; gene_id "Ledus.S2G172900"
Ledus.S2	AUGUSTUS	stop_codon	12932813	12932815	.	-	0	transcript_id "Ledus.S2G172900.t1"; gene_id "Ledus.S2G172900"
Ledus.S2	AUGUSTUS	CDS	12932816	12933109	0.6	-	0	transcript_id "Ledus.S2G172900.t1"; gene_id "Ledus.S2G172900"
Ledus.S2	AUGUSTUS	exon	12932816	12933109	.	-	.	transcript_id "Ledus.S2G172900.t1"; gene_id "Ledus.S2G172900"
Ledus.S2	AUGUSTUS	start_codon	12933107	12933109	.	-	0	transcript_id "Ledus.S2G172900.t1"; gene_id "Ledus.S2G172900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6900.t1 is derived from g4344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35066950	35068906	.	+	.	Ledus.S1G432100
Ledus.S1	AUGUSTUS	transcript	35066950	35068906	.	+	.	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	start_codon	35066950	35066952	.	+	0	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	CDS	35066950	35067371	1	+	0	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	exon	35066950	35067371	.	+	.	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	intron	35067372	35067463	.	+	.	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	CDS	35067464	35067785	0.91	+	1	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	exon	35067464	35067785	.	+	.	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	intron	35067786	35067887	.	+	.	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	CDS	35067888	35068183	0.9	+	0	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	exon	35067888	35068183	.	+	.	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	intron	35068184	35068268	.	+	.	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	CDS	35068269	35068615	1	+	1	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	exon	35068269	35068615	.	+	.	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	intron	35068616	35068691	.	+	.	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	CDS	35068692	35068906	0.3	+	2	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	exon	35068692	35068906	.	+	.	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
Ledus.S1	AUGUSTUS	stop_codon	35068907	35068909	.	+	0	transcript_id "Ledus.S1G432100.t1"; gene_id "Ledus.S1G432100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1060.t1 is derived from g7921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7171484	7172719	.	+	.	Ledus.S2G094200
Ledus.S2	AUGUSTUS	transcript	7171484	7172719	.	+	.	transcript_id "Ledus.S2G094200.t1"; gene_id "Ledus.S2G094200"
Ledus.S2	AUGUSTUS	start_codon	7171484	7171486	.	+	0	transcript_id "Ledus.S2G094200.t1"; gene_id "Ledus.S2G094200"
Ledus.S2	AUGUSTUS	CDS	7171484	7171547	0.87	+	0	transcript_id "Ledus.S2G094200.t1"; gene_id "Ledus.S2G094200"
Ledus.S2	AUGUSTUS	exon	7171484	7171547	.	+	.	transcript_id "Ledus.S2G094200.t1"; gene_id "Ledus.S2G094200"
Ledus.S2	AUGUSTUS	intron	7171548	7171866	.	+	.	transcript_id "Ledus.S2G094200.t1"; gene_id "Ledus.S2G094200"
Ledus.S2	AUGUSTUS	CDS	7171867	7172495	0.44	+	2	transcript_id "Ledus.S2G094200.t1"; gene_id "Ledus.S2G094200"
Ledus.S2	AUGUSTUS	exon	7171867	7172495	.	+	.	transcript_id "Ledus.S2G094200.t1"; gene_id "Ledus.S2G094200"
Ledus.S2	AUGUSTUS	intron	7172496	7172566	.	+	.	transcript_id "Ledus.S2G094200.t1"; gene_id "Ledus.S2G094200"
Ledus.S2	AUGUSTUS	CDS	7172567	7172719	0.69	+	0	transcript_id "Ledus.S2G094200.t1"; gene_id "Ledus.S2G094200"
Ledus.S2	AUGUSTUS	exon	7172567	7172719	.	+	.	transcript_id "Ledus.S2G094200.t1"; gene_id "Ledus.S2G094200"
Ledus.S2	AUGUSTUS	stop_codon	7172720	7172722	.	+	0	transcript_id "Ledus.S2G094200.t1"; gene_id "Ledus.S2G094200"
# This transcript jg5397.t2 is derived from g2836.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5397.t3 is derived from g2836.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5398.t1 is derived from g2837.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23992787	23995329	.	+	.	Ledus.S1G281900
Ledus.S1	AUGUSTUS	transcript	23992787	23995329	.	+	.	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	start_codon	23992787	23992789	.	+	0	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	CDS	23992787	23993984	0.93	+	0	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	exon	23992787	23993984	.	+	.	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	intron	23993985	23994147	.	+	.	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	CDS	23994148	23994684	0.97	+	2	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	exon	23994148	23994684	.	+	.	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	intron	23994685	23994873	.	+	.	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	CDS	23994874	23994897	0.99	+	2	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	exon	23994874	23994897	.	+	.	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	intron	23994898	23995128	.	+	.	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	CDS	23995129	23995170	0.97	+	2	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	exon	23995129	23995170	.	+	.	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	intron	23995171	23995261	.	+	.	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	CDS	23995262	23995329	0.97	+	2	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	exon	23995262	23995329	.	+	.	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	stop_codon	23995330	23995332	.	+	0	transcript_id "Ledus.S1G281900.t1"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	transcript	23992787	23995056	.	+	.	transcript_id "Ledus.S1G281900.t2"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	start_codon	23992787	23992789	.	+	0	transcript_id "Ledus.S1G281900.t2"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	CDS	23992787	23993984	0.96	+	0	transcript_id "Ledus.S1G281900.t2"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	exon	23992787	23993984	.	+	.	transcript_id "Ledus.S1G281900.t2"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	intron	23993985	23994147	.	+	.	transcript_id "Ledus.S1G281900.t2"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	CDS	23994148	23994684	0.94	+	2	transcript_id "Ledus.S1G281900.t2"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	exon	23994148	23994684	.	+	.	transcript_id "Ledus.S1G281900.t2"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	intron	23994685	23995051	.	+	.	transcript_id "Ledus.S1G281900.t2"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	CDS	23995052	23995056	0.51	+	2	transcript_id "Ledus.S1G281900.t2"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	exon	23995052	23995056	.	+	.	transcript_id "Ledus.S1G281900.t2"; gene_id "Ledus.S1G281900"
Ledus.S1	AUGUSTUS	stop_codon	23995057	23995059	.	+	0	transcript_id "Ledus.S1G281900.t2"; gene_id "Ledus.S1G281900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6721.t1 is derived from g4164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33524936	33526924	.	-	.	Ledus.S1G414200
Ledus.S1	AUGUSTUS	transcript	33524936	33526924	.	-	.	transcript_id "Ledus.S1G414200.t1"; gene_id "Ledus.S1G414200"
Ledus.S1	AUGUSTUS	stop_codon	33524933	33524935	.	-	0	transcript_id "Ledus.S1G414200.t1"; gene_id "Ledus.S1G414200"
Ledus.S1	AUGUSTUS	CDS	33524936	33526924	0.8	-	0	transcript_id "Ledus.S1G414200.t1"; gene_id "Ledus.S1G414200"
Ledus.S1	AUGUSTUS	exon	33524936	33526924	.	-	.	transcript_id "Ledus.S1G414200.t1"; gene_id "Ledus.S1G414200"
Ledus.S1	AUGUSTUS	start_codon	33526922	33526924	.	-	0	transcript_id "Ledus.S1G414200.t1"; gene_id "Ledus.S1G414200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1579.t1 is derived from g8440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11097371	11098248	.	+	.	Ledus.S2G146100
Ledus.S2	AUGUSTUS	transcript	11097371	11098248	.	+	.	transcript_id "Ledus.S2G146100.t1"; gene_id "Ledus.S2G146100"
Ledus.S2	AUGUSTUS	start_codon	11097371	11097373	.	+	0	transcript_id "Ledus.S2G146100.t1"; gene_id "Ledus.S2G146100"
Ledus.S2	AUGUSTUS	CDS	11097371	11097869	0.33	+	0	transcript_id "Ledus.S2G146100.t1"; gene_id "Ledus.S2G146100"
Ledus.S2	AUGUSTUS	exon	11097371	11097869	.	+	.	transcript_id "Ledus.S2G146100.t1"; gene_id "Ledus.S2G146100"
Ledus.S2	AUGUSTUS	intron	11097870	11097961	.	+	.	transcript_id "Ledus.S2G146100.t1"; gene_id "Ledus.S2G146100"
Ledus.S2	AUGUSTUS	CDS	11097962	11098248	0.91	+	2	transcript_id "Ledus.S2G146100.t1"; gene_id "Ledus.S2G146100"
Ledus.S2	AUGUSTUS	exon	11097962	11098248	.	+	.	transcript_id "Ledus.S2G146100.t1"; gene_id "Ledus.S2G146100"
Ledus.S2	AUGUSTUS	stop_codon	11098249	11098251	.	+	0	transcript_id "Ledus.S2G146100.t1"; gene_id "Ledus.S2G146100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10779.t1 is derived from g11811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17607149	17608228	.	-	.	Ledus.S3G225600
Ledus.S3	AUGUSTUS	transcript	17607149	17608228	.	-	.	transcript_id "Ledus.S3G225600.t1"; gene_id "Ledus.S3G225600"
Ledus.S3	AUGUSTUS	stop_codon	17607146	17607148	.	-	0	transcript_id "Ledus.S3G225600.t1"; gene_id "Ledus.S3G225600"
Ledus.S3	AUGUSTUS	CDS	17607149	17607769	0.99	-	0	transcript_id "Ledus.S3G225600.t1"; gene_id "Ledus.S3G225600"
Ledus.S3	AUGUSTUS	exon	17607149	17607769	.	-	.	transcript_id "Ledus.S3G225600.t1"; gene_id "Ledus.S3G225600"
Ledus.S3	AUGUSTUS	intron	17607770	17607865	.	-	.	transcript_id "Ledus.S3G225600.t1"; gene_id "Ledus.S3G225600"
Ledus.S3	AUGUSTUS	CDS	17607866	17608228	0.99	-	0	transcript_id "Ledus.S3G225600.t1"; gene_id "Ledus.S3G225600"
Ledus.S3	AUGUSTUS	exon	17607866	17608228	.	-	.	transcript_id "Ledus.S3G225600.t1"; gene_id "Ledus.S3G225600"
Ledus.S3	AUGUSTUS	start_codon	17608226	17608228	.	-	0	transcript_id "Ledus.S3G225600.t1"; gene_id "Ledus.S3G225600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12054.t1 is derived from g5673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9213007	9213216	.	+	.	Ledus.S4G121000
Ledus.S4	AUGUSTUS	transcript	9213007	9213216	.	+	.	transcript_id "Ledus.S4G121000.t1"; gene_id "Ledus.S4G121000"
Ledus.S4	AUGUSTUS	start_codon	9213007	9213009	.	+	0	transcript_id "Ledus.S4G121000.t1"; gene_id "Ledus.S4G121000"
Ledus.S4	AUGUSTUS	CDS	9213007	9213216	0.98	+	0	transcript_id "Ledus.S4G121000.t1"; gene_id "Ledus.S4G121000"
Ledus.S4	AUGUSTUS	exon	9213007	9213216	.	+	.	transcript_id "Ledus.S4G121000.t1"; gene_id "Ledus.S4G121000"
Ledus.S4	AUGUSTUS	stop_codon	9213217	9213219	.	+	0	transcript_id "Ledus.S4G121000.t1"; gene_id "Ledus.S4G121000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1753.t1 is derived from g8615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12337938	12341384	.	+	.	Ledus.S2G163500
Ledus.S2	AUGUSTUS	transcript	12337938	12341384	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	start_codon	12337938	12337940	.	+	0	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12337938	12338053	0.45	+	0	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12337938	12338053	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12338054	12338345	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12338346	12338634	0.76	+	1	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12338346	12338634	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12338635	12338742	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12338743	12338993	0.99	+	0	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12338743	12338993	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12338994	12339096	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12339097	12339388	0.97	+	1	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12339097	12339388	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12339389	12339482	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12339483	12339635	1	+	0	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12339483	12339635	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12339636	12339724	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12339725	12339912	0.7	+	0	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12339725	12339912	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12339913	12340009	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12340010	12340048	0.91	+	1	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12340010	12340048	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12340049	12340195	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12340196	12341384	0.94	+	1	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12340196	12341384	.	+	.	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	stop_codon	12341385	12341387	.	+	0	transcript_id "Ledus.S2G163500.t1"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	transcript	12337938	12341384	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	start_codon	12337938	12337940	.	+	0	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12337938	12338053	0.52	+	0	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12337938	12338053	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12338054	12338345	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12338346	12338634	0.67	+	1	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12338346	12338634	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12338635	12338742	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12338743	12338993	1	+	0	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12338743	12338993	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12338994	12339096	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12339097	12339388	0.99	+	1	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12339097	12339388	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12339389	12339482	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12339483	12339635	1	+	0	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12339483	12339635	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12339636	12339724	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12339725	12339912	0.57	+	0	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12339725	12339912	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12339913	12340009	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12340010	12340048	0.73	+	1	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12340010	12340048	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	intron	12340049	12340192	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	CDS	12340193	12341384	0.82	+	1	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	exon	12340193	12341384	.	+	.	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
Ledus.S2	AUGUSTUS	stop_codon	12341385	12341387	.	+	0	transcript_id "Ledus.S2G163500.t2"; gene_id "Ledus.S2G163500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2550.t1 is derived from g9413.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18887546	18891357	.	-	.	Ledus.S2G243200
Ledus.S2	AUGUSTUS	transcript	18887546	18891357	.	-	.	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	stop_codon	18887543	18887545	.	-	0	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	CDS	18887546	18888868	0.75	-	0	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	exon	18887546	18888868	.	-	.	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	intron	18888869	18888983	.	-	.	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	CDS	18888984	18889203	0.92	-	1	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	exon	18888984	18889203	.	-	.	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	intron	18889204	18889559	.	-	.	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	CDS	18889560	18890128	0.78	-	0	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	exon	18889560	18890128	.	-	.	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	intron	18890129	18890238	.	-	.	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	CDS	18890239	18891357	0.8	-	0	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	exon	18890239	18891357	.	-	.	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
Ledus.S2	AUGUSTUS	start_codon	18891355	18891357	.	-	0	transcript_id "Ledus.S2G243200.t1"; gene_id "Ledus.S2G243200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3748.t1 is derived from g1184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11559702	11560744	.	-	.	Ledus.S1G116900
Ledus.S1	AUGUSTUS	transcript	11559702	11560744	.	-	.	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	stop_codon	11559699	11559701	.	-	0	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	CDS	11559702	11559863	0.42	-	0	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	exon	11559702	11559863	.	-	.	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	intron	11559864	11560250	.	-	.	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	CDS	11560251	11560381	0.68	-	2	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	exon	11560251	11560381	.	-	.	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	intron	11560382	11560514	.	-	.	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	CDS	11560515	11560569	1	-	0	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	exon	11560515	11560569	.	-	.	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	intron	11560570	11560651	.	-	.	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	CDS	11560652	11560744	1	-	0	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	exon	11560652	11560744	.	-	.	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
Ledus.S1	AUGUSTUS	start_codon	11560742	11560744	.	-	0	transcript_id "Ledus.S1G116900.t1"; gene_id "Ledus.S1G116900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9600.t1 is derived from g10630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8285853	8287082	.	+	.	Ledus.S3G107700
Ledus.S3	AUGUSTUS	transcript	8285853	8287082	.	+	.	transcript_id "Ledus.S3G107700.t1"; gene_id "Ledus.S3G107700"
Ledus.S3	AUGUSTUS	start_codon	8285853	8285855	.	+	0	transcript_id "Ledus.S3G107700.t1"; gene_id "Ledus.S3G107700"
Ledus.S3	AUGUSTUS	CDS	8285853	8287082	0.63	+	0	transcript_id "Ledus.S3G107700.t1"; gene_id "Ledus.S3G107700"
Ledus.S3	AUGUSTUS	exon	8285853	8287082	.	+	.	transcript_id "Ledus.S3G107700.t1"; gene_id "Ledus.S3G107700"
Ledus.S3	AUGUSTUS	stop_codon	8287083	8287085	.	+	0	transcript_id "Ledus.S3G107700.t1"; gene_id "Ledus.S3G107700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12121.t1 is derived from g5740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9642883	9644437	.	+	.	Ledus.S4G127700
Ledus.S4	AUGUSTUS	transcript	9642883	9644437	.	+	.	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	start_codon	9642883	9642885	.	+	0	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	CDS	9642883	9642981	0.93	+	0	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	exon	9642883	9642981	.	+	.	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	intron	9642982	9643124	.	+	.	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	CDS	9643125	9643206	1	+	0	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	exon	9643125	9643206	.	+	.	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	intron	9643207	9643495	.	+	.	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	CDS	9643496	9643583	0.97	+	2	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	exon	9643496	9643583	.	+	.	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	intron	9643584	9643661	.	+	.	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	CDS	9643662	9643737	1	+	1	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	exon	9643662	9643737	.	+	.	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	intron	9643738	9643831	.	+	.	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	CDS	9643832	9643896	1	+	0	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	exon	9643832	9643896	.	+	.	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	intron	9643897	9643977	.	+	.	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	CDS	9643978	9644437	1	+	1	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	exon	9643978	9644437	.	+	.	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
Ledus.S4	AUGUSTUS	stop_codon	9644438	9644440	.	+	0	transcript_id "Ledus.S4G127700.t1"; gene_id "Ledus.S4G127700"
# This transcript jg8778.t2 is derived from g9808.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8779.t1 is derived from g9809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1927153	1928695	.	+	.	Ledus.S3G025600
Ledus.S3	AUGUSTUS	transcript	1927153	1928695	.	+	.	transcript_id "Ledus.S3G025600.t1"; gene_id "Ledus.S3G025600"
Ledus.S3	AUGUSTUS	start_codon	1927153	1927155	.	+	0	transcript_id "Ledus.S3G025600.t1"; gene_id "Ledus.S3G025600"
Ledus.S3	AUGUSTUS	CDS	1927153	1927988	0.75	+	0	transcript_id "Ledus.S3G025600.t1"; gene_id "Ledus.S3G025600"
Ledus.S3	AUGUSTUS	exon	1927153	1927988	.	+	.	transcript_id "Ledus.S3G025600.t1"; gene_id "Ledus.S3G025600"
Ledus.S3	AUGUSTUS	intron	1927989	1928182	.	+	.	transcript_id "Ledus.S3G025600.t1"; gene_id "Ledus.S3G025600"
Ledus.S3	AUGUSTUS	CDS	1928183	1928432	1	+	1	transcript_id "Ledus.S3G025600.t1"; gene_id "Ledus.S3G025600"
Ledus.S3	AUGUSTUS	exon	1928183	1928432	.	+	.	transcript_id "Ledus.S3G025600.t1"; gene_id "Ledus.S3G025600"
Ledus.S3	AUGUSTUS	intron	1928433	1928518	.	+	.	transcript_id "Ledus.S3G025600.t1"; gene_id "Ledus.S3G025600"
Ledus.S3	AUGUSTUS	CDS	1928519	1928695	0.92	+	0	transcript_id "Ledus.S3G025600.t1"; gene_id "Ledus.S3G025600"
Ledus.S3	AUGUSTUS	exon	1928519	1928695	.	+	.	transcript_id "Ledus.S3G025600.t1"; gene_id "Ledus.S3G025600"
Ledus.S3	AUGUSTUS	stop_codon	1928696	1928698	.	+	0	transcript_id "Ledus.S3G025600.t1"; gene_id "Ledus.S3G025600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2693.t1 is derived from g126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1989894	1994298	.	+	.	Ledus.S1G011400
Ledus.S1	AUGUSTUS	transcript	1989894	1994298	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	start_codon	1989894	1989896	.	+	0	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	CDS	1989894	1990736	1	+	0	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	exon	1989894	1990736	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	intron	1990737	1990845	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	CDS	1990846	1990951	0.54	+	0	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	exon	1990846	1990951	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	intron	1990952	1991174	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	CDS	1991175	1991826	0.36	+	2	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	exon	1991175	1991826	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	intron	1991827	1992119	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	CDS	1992120	1992207	0.29	+	1	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	exon	1992120	1992207	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	intron	1992208	1992507	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	CDS	1992508	1992556	0.41	+	0	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	exon	1992508	1992556	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	intron	1992557	1992746	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	CDS	1992747	1992856	0.88	+	2	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	exon	1992747	1992856	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	intron	1992857	1993044	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	CDS	1993045	1993218	1	+	0	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	exon	1993045	1993218	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	intron	1993219	1993309	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	CDS	1993310	1993375	0.53	+	0	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	exon	1993310	1993375	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	intron	1993376	1993478	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	CDS	1993479	1993511	0.28	+	0	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	exon	1993479	1993511	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	intron	1993512	1993632	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	CDS	1993633	1993746	0.81	+	0	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	exon	1993633	1993746	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	intron	1993747	1993900	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	CDS	1993901	1994048	0.62	+	0	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	exon	1993901	1994048	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	intron	1994049	1994146	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	CDS	1994147	1994298	0.66	+	2	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	exon	1994147	1994298	.	+	.	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
Ledus.S1	AUGUSTUS	stop_codon	1994299	1994301	.	+	0	transcript_id "Ledus.S1G011400.t1"; gene_id "Ledus.S1G011400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5361.t1 is derived from g2800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23656318	23660646	.	-	.	Ledus.S1G278200
Ledus.S1	AUGUSTUS	transcript	23656318	23660646	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	stop_codon	23656315	23656317	.	-	0	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23656318	23656410	0.51	-	0	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23656318	23656410	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23656411	23656548	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23656549	23656567	0.57	-	1	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23656549	23656567	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23656568	23656799	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23656800	23657320	0.68	-	0	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23656800	23657320	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23657321	23657424	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23657425	23657554	1	-	1	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23657425	23657554	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23657555	23657655	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23657656	23657939	0.97	-	0	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23657656	23657939	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23657940	23658056	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23658057	23658183	0.95	-	1	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23658057	23658183	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23658184	23658269	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23658270	23658358	1	-	0	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23658270	23658358	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23658359	23658490	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23658491	23658561	1	-	2	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23658491	23658561	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23658562	23658671	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23658672	23658786	0.78	-	0	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23658672	23658786	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23658787	23658898	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23658899	23658965	0.95	-	1	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23658899	23658965	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23658966	23659372	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23659373	23659441	0.99	-	1	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23659373	23659441	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23659442	23659674	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23659675	23660292	0.3	-	1	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23659675	23660292	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23660293	23660337	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23660338	23660431	0.65	-	2	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23660338	23660431	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	intron	23660432	23660585	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	CDS	23660586	23660646	0.99	-	0	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	exon	23660586	23660646	.	-	.	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
Ledus.S1	AUGUSTUS	start_codon	23660644	23660646	.	-	0	transcript_id "Ledus.S1G278200.t1"; gene_id "Ledus.S1G278200"
# This transcript jg11758.t2 is derived from g5376.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11759.t1 is derived from g5378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6604027	6605265	.	+	.	Ledus.S4G091500
Ledus.S4	AUGUSTUS	transcript	6604027	6605265	.	+	.	transcript_id "Ledus.S4G091500.t1"; gene_id "Ledus.S4G091500"
Ledus.S4	AUGUSTUS	start_codon	6604027	6604029	.	+	0	transcript_id "Ledus.S4G091500.t1"; gene_id "Ledus.S4G091500"
Ledus.S4	AUGUSTUS	CDS	6604027	6605265	1	+	0	transcript_id "Ledus.S4G091500.t1"; gene_id "Ledus.S4G091500"
Ledus.S4	AUGUSTUS	exon	6604027	6605265	.	+	.	transcript_id "Ledus.S4G091500.t1"; gene_id "Ledus.S4G091500"
Ledus.S4	AUGUSTUS	stop_codon	6605266	6605268	.	+	0	transcript_id "Ledus.S4G091500.t1"; gene_id "Ledus.S4G091500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5366.t1 is derived from g2805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23752760	23752957	.	+	.	Ledus.S1G278700
Ledus.S1	AUGUSTUS	transcript	23752760	23752957	.	+	.	transcript_id "Ledus.S1G278700.t1"; gene_id "Ledus.S1G278700"
Ledus.S1	AUGUSTUS	start_codon	23752760	23752762	.	+	0	transcript_id "Ledus.S1G278700.t1"; gene_id "Ledus.S1G278700"
Ledus.S1	AUGUSTUS	CDS	23752760	23752957	0.39	+	0	transcript_id "Ledus.S1G278700.t1"; gene_id "Ledus.S1G278700"
Ledus.S1	AUGUSTUS	exon	23752760	23752957	.	+	.	transcript_id "Ledus.S1G278700.t1"; gene_id "Ledus.S1G278700"
Ledus.S1	AUGUSTUS	stop_codon	23752958	23752960	.	+	0	transcript_id "Ledus.S1G278700.t1"; gene_id "Ledus.S1G278700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10371.t1 is derived from g11401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14578504	14579488	.	-	.	Ledus.S3G184800
Ledus.S3	AUGUSTUS	transcript	14578504	14579488	.	-	.	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	stop_codon	14578501	14578503	.	-	0	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	CDS	14578504	14578576	1	-	1	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	exon	14578504	14578576	.	-	.	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	intron	14578577	14578669	.	-	.	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	CDS	14578670	14578717	1	-	1	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	exon	14578670	14578717	.	-	.	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	intron	14578718	14578851	.	-	.	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	CDS	14578852	14578885	0.51	-	2	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	exon	14578852	14578885	.	-	.	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	intron	14578886	14578985	.	-	.	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	CDS	14578986	14579087	1	-	2	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	exon	14578986	14579087	.	-	.	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	intron	14579088	14579226	.	-	.	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	CDS	14579227	14579247	0.79	-	2	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	exon	14579227	14579247	.	-	.	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	intron	14579248	14579421	.	-	.	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	CDS	14579422	14579488	0.94	-	0	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	exon	14579422	14579488	.	-	.	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
Ledus.S3	AUGUSTUS	start_codon	14579486	14579488	.	-	0	transcript_id "Ledus.S3G184800.t1"; gene_id "Ledus.S3G184800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7056.t1 is derived from g6587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1110800	1116282	.	-	.	Ledus.C7G011700
Ledus.C7	AUGUSTUS	transcript	1110800	1116282	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	stop_codon	1110797	1110799	.	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1110800	1110859	0.73	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1110800	1110859	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1110860	1110995	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1110996	1111093	0.43	-	2	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1110996	1111093	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1111094	1111163	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1111164	1111210	0.48	-	1	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1111164	1111210	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1111211	1111310	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1111311	1111437	1	-	2	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1111311	1111437	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1111438	1111991	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1111992	1112091	1	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1111992	1112091	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1112092	1112401	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1112402	1112473	1	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1112402	1112473	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1112474	1112647	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1112648	1112695	1	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1112648	1112695	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1112696	1112832	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1112833	1112922	1	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1112833	1112922	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1112923	1113020	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1113021	1113111	1	-	1	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1113021	1113111	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1113112	1113231	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1113232	1113339	0.93	-	1	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1113232	1113339	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1113340	1113454	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1113455	1113543	1	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1113455	1113543	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1113544	1113689	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1113690	1113794	1	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1113690	1113794	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1113795	1113966	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1113967	1114139	0.91	-	2	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1113967	1114139	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1114140	1114251	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1114252	1114342	0.95	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1114252	1114342	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1114343	1114463	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1114464	1114572	1	-	1	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1114464	1114572	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1114573	1114894	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1114895	1115019	1	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1114895	1115019	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1115020	1115378	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1115379	1115561	1	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1115379	1115561	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1115562	1115889	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1115890	1115928	0.97	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1115890	1115928	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	intron	1115929	1116093	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	CDS	1116094	1116282	0.5	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	exon	1116094	1116282	.	-	.	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
Ledus.C7	AUGUSTUS	start_codon	1116280	1116282	.	-	0	transcript_id "Ledus.C7G011700.t1"; gene_id "Ledus.C7G011700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5431.t1 is derived from g2870.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24134393	24136235	.	+	.	Ledus.S1G285200
Ledus.S1	AUGUSTUS	transcript	24134393	24136235	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	start_codon	24134393	24134395	.	+	0	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	CDS	24134393	24134416	0.24	+	0	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	exon	24134393	24134416	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	intron	24134417	24134600	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	CDS	24134601	24134664	0.77	+	0	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	exon	24134601	24134664	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	intron	24134665	24134753	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	CDS	24134754	24135008	1	+	2	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	exon	24134754	24135008	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	intron	24135009	24135097	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	CDS	24135098	24135220	1	+	2	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	exon	24135098	24135220	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	intron	24135221	24135304	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	CDS	24135305	24135373	1	+	2	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	exon	24135305	24135373	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	intron	24135374	24135454	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	CDS	24135455	24135644	1	+	2	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	exon	24135455	24135644	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	intron	24135645	24135723	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	CDS	24135724	24135850	1	+	1	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	exon	24135724	24135850	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	intron	24135851	24135938	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	CDS	24135939	24136235	0.76	+	0	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	exon	24135939	24136235	.	+	.	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
Ledus.S1	AUGUSTUS	stop_codon	24136236	24136238	.	+	0	transcript_id "Ledus.S1G285200.t1"; gene_id "Ledus.S1G285200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5770.t1 is derived from g3211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26671397	26673334	.	-	.	Ledus.S1G319100
Ledus.S1	AUGUSTUS	transcript	26671397	26673334	.	-	.	transcript_id "Ledus.S1G319100.t1"; gene_id "Ledus.S1G319100"
Ledus.S1	AUGUSTUS	stop_codon	26671394	26671396	.	-	0	transcript_id "Ledus.S1G319100.t1"; gene_id "Ledus.S1G319100"
Ledus.S1	AUGUSTUS	CDS	26671397	26673334	1	-	0	transcript_id "Ledus.S1G319100.t1"; gene_id "Ledus.S1G319100"
Ledus.S1	AUGUSTUS	exon	26671397	26673334	.	-	.	transcript_id "Ledus.S1G319100.t1"; gene_id "Ledus.S1G319100"
Ledus.S1	AUGUSTUS	start_codon	26673332	26673334	.	-	0	transcript_id "Ledus.S1G319100.t1"; gene_id "Ledus.S1G319100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4226.t1 is derived from g1662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15648475	15650786	.	+	.	Ledus.S1G164700
Ledus.S1	AUGUSTUS	transcript	15648475	15650786	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	start_codon	15648475	15648477	.	+	0	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	CDS	15648475	15649457	0.95	+	0	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	exon	15648475	15649457	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	intron	15649458	15649550	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	CDS	15649551	15649646	0.89	+	1	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	exon	15649551	15649646	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	intron	15649647	15649812	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	CDS	15649813	15649886	0.92	+	1	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	exon	15649813	15649886	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	intron	15649887	15649964	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	CDS	15649965	15650089	1	+	2	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	exon	15649965	15650089	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	intron	15650090	15650184	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	CDS	15650185	15650281	1	+	0	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	exon	15650185	15650281	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	intron	15650282	15650357	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	CDS	15650358	15650467	1	+	2	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	exon	15650358	15650467	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	intron	15650468	15650564	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	CDS	15650565	15650639	1	+	0	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	exon	15650565	15650639	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	intron	15650640	15650738	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	CDS	15650739	15650786	1	+	0	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	exon	15650739	15650786	.	+	.	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
Ledus.S1	AUGUSTUS	stop_codon	15650787	15650789	.	+	0	transcript_id "Ledus.S1G164700.t1"; gene_id "Ledus.S1G164700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10124.t1 is derived from g11154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12949579	12950683	.	+	.	Ledus.S3G160100
Ledus.S3	AUGUSTUS	transcript	12949579	12950683	.	+	.	transcript_id "Ledus.S3G160100.t1"; gene_id "Ledus.S3G160100"
Ledus.S3	AUGUSTUS	start_codon	12949579	12949581	.	+	0	transcript_id "Ledus.S3G160100.t1"; gene_id "Ledus.S3G160100"
Ledus.S3	AUGUSTUS	CDS	12949579	12949849	0.65	+	0	transcript_id "Ledus.S3G160100.t1"; gene_id "Ledus.S3G160100"
Ledus.S3	AUGUSTUS	exon	12949579	12949849	.	+	.	transcript_id "Ledus.S3G160100.t1"; gene_id "Ledus.S3G160100"
Ledus.S3	AUGUSTUS	intron	12949850	12949937	.	+	.	transcript_id "Ledus.S3G160100.t1"; gene_id "Ledus.S3G160100"
Ledus.S3	AUGUSTUS	CDS	12949938	12950683	0.86	+	2	transcript_id "Ledus.S3G160100.t1"; gene_id "Ledus.S3G160100"
Ledus.S3	AUGUSTUS	exon	12949938	12950683	.	+	.	transcript_id "Ledus.S3G160100.t1"; gene_id "Ledus.S3G160100"
Ledus.S3	AUGUSTUS	stop_codon	12950684	12950686	.	+	0	transcript_id "Ledus.S3G160100.t1"; gene_id "Ledus.S3G160100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9095.t1 is derived from g10125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4555266	4558275	.	+	.	Ledus.S3G057200
Ledus.S3	AUGUSTUS	transcript	4555266	4558275	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	start_codon	4555266	4555268	.	+	0	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	CDS	4555266	4555352	0.63	+	0	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	exon	4555266	4555352	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	intron	4555353	4555491	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	CDS	4555492	4555590	1	+	0	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	exon	4555492	4555590	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	intron	4555591	4555749	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	CDS	4555750	4555834	1	+	0	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	exon	4555750	4555834	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	intron	4555835	4555926	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	CDS	4555927	4555996	1	+	2	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	exon	4555927	4555996	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	intron	4555997	4556096	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	CDS	4556097	4556157	1	+	1	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	exon	4556097	4556157	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	intron	4556158	4556266	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	CDS	4556267	4556320	1	+	0	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	exon	4556267	4556320	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	intron	4556321	4556414	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	CDS	4556415	4556574	1	+	0	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	exon	4556415	4556574	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	intron	4556575	4556788	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	CDS	4556789	4556873	1	+	2	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	exon	4556789	4556873	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	intron	4556874	4556966	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	CDS	4556967	4557076	1	+	1	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	exon	4556967	4557076	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	intron	4557077	4557175	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	CDS	4557176	4557282	1	+	2	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	exon	4557176	4557282	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	intron	4557283	4557406	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	CDS	4557407	4557517	1	+	0	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	exon	4557407	4557517	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	intron	4557518	4558143	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	CDS	4558144	4558275	1	+	0	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	exon	4558144	4558275	.	+	.	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
Ledus.S3	AUGUSTUS	stop_codon	4558276	4558278	.	+	0	transcript_id "Ledus.S3G057200.t1"; gene_id "Ledus.S3G057200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3184.t1 is derived from g619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6635998	6646153	.	-	.	Ledus.S1G060500
Ledus.S1	AUGUSTUS	transcript	6635998	6646153	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	stop_codon	6635995	6635997	.	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6635998	6636231	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6635998	6636231	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6636232	6636323	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6636324	6637046	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6636324	6637046	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6637047	6637151	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6637152	6637637	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6637152	6637637	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6637638	6637872	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6637873	6638238	0.87	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6637873	6638238	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6638239	6638384	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6638385	6638461	0.9	-	2	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6638385	6638461	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6638462	6638537	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6638538	6638875	0.91	-	1	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6638538	6638875	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6638876	6639010	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6639011	6639167	1	-	2	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6639011	6639167	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6639168	6639256	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6639257	6639389	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6639257	6639389	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6639390	6639651	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6639652	6639963	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6639652	6639963	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6639964	6640063	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6640064	6640387	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6640064	6640387	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6640388	6640483	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6640484	6640568	1	-	1	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6640484	6640568	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6640569	6640821	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6640822	6640910	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6640822	6640910	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6640911	6641010	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6641011	6641086	0.98	-	1	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6641011	6641086	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6641087	6641204	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6641205	6641305	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6641205	6641305	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6641306	6641563	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6641564	6641650	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6641564	6641650	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6641651	6641793	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6641794	6641837	1	-	2	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6641794	6641837	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6641838	6642045	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6642046	6642133	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6642046	6642133	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6642134	6642256	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6642257	6642317	1	-	1	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6642257	6642317	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6642318	6642441	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6642442	6642494	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6642442	6642494	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6642495	6642578	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6642579	6642786	1	-	1	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6642579	6642786	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6642787	6643032	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6643033	6643156	1	-	2	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6643033	6643156	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6643157	6643400	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6643401	6643521	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6643401	6643521	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6643522	6643855	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6643856	6643969	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6643856	6643969	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6643970	6644114	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6644115	6644184	1	-	1	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6644115	6644184	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6644185	6644398	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6644399	6644475	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6644399	6644475	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6644476	6644704	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6644705	6644839	0.99	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6644705	6644839	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6644840	6645153	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6645154	6645289	0.82	-	1	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6645154	6645289	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6645290	6645404	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6645405	6645496	0.99	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6645405	6645496	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6645497	6645642	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6645643	6645729	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6645643	6645729	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6645730	6645838	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6645839	6645958	1	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6645839	6645958	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	intron	6645959	6646042	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	CDS	6646043	6646153	0.82	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	exon	6646043	6646153	.	-	.	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
Ledus.S1	AUGUSTUS	start_codon	6646151	6646153	.	-	0	transcript_id "Ledus.S1G060500.t1"; gene_id "Ledus.S1G060500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12349.t1 is derived from g5970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11355174	11356402	.	+	.	Ledus.S4G150500
Ledus.S4	AUGUSTUS	transcript	11355174	11356402	.	+	.	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	start_codon	11355174	11355176	.	+	0	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	CDS	11355174	11355331	0.98	+	0	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	exon	11355174	11355331	.	+	.	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	intron	11355332	11355398	.	+	.	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	CDS	11355399	11355508	1	+	1	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	exon	11355399	11355508	.	+	.	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	intron	11355509	11355598	.	+	.	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	CDS	11355599	11355677	1	+	2	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	exon	11355599	11355677	.	+	.	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	intron	11355678	11355784	.	+	.	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	CDS	11355785	11355923	1	+	1	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	exon	11355785	11355923	.	+	.	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	intron	11355924	11355997	.	+	.	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	CDS	11355998	11356111	0.71	+	0	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	exon	11355998	11356111	.	+	.	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	intron	11356112	11356213	.	+	.	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	CDS	11356214	11356402	0.76	+	0	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	exon	11356214	11356402	.	+	.	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
Ledus.S4	AUGUSTUS	stop_codon	11356403	11356405	.	+	0	transcript_id "Ledus.S4G150500.t1"; gene_id "Ledus.S4G150500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4072.t1 is derived from g1508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14467394	14470308	.	-	.	Ledus.S1G149300
Ledus.S1	AUGUSTUS	transcript	14467394	14470308	.	-	.	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	stop_codon	14467391	14467393	.	-	0	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	CDS	14467394	14467591	0.01	-	0	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	exon	14467394	14467591	.	-	.	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	intron	14467592	14468194	.	-	.	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	CDS	14468195	14468254	0.95	-	0	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	exon	14468195	14468254	.	-	.	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	intron	14468255	14469590	.	-	.	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	CDS	14469591	14469769	0.81	-	2	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	exon	14469591	14469769	.	-	.	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	intron	14469770	14470193	.	-	.	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	CDS	14470194	14470308	0.13	-	0	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	exon	14470194	14470308	.	-	.	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
Ledus.S1	AUGUSTUS	start_codon	14470306	14470308	.	-	0	transcript_id "Ledus.S1G149300.t1"; gene_id "Ledus.S1G149300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2613.t1 is derived from g46.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	472010	472624	.	+	.	Ledus.S1G003400
Ledus.S1	AUGUSTUS	transcript	472010	472624	.	+	.	transcript_id "Ledus.S1G003400.t1"; gene_id "Ledus.S1G003400"
Ledus.S1	AUGUSTUS	start_codon	472010	472012	.	+	0	transcript_id "Ledus.S1G003400.t1"; gene_id "Ledus.S1G003400"
Ledus.S1	AUGUSTUS	CDS	472010	472624	0.34	+	0	transcript_id "Ledus.S1G003400.t1"; gene_id "Ledus.S1G003400"
Ledus.S1	AUGUSTUS	exon	472010	472624	.	+	.	transcript_id "Ledus.S1G003400.t1"; gene_id "Ledus.S1G003400"
Ledus.S1	AUGUSTUS	stop_codon	472625	472627	.	+	0	transcript_id "Ledus.S1G003400.t1"; gene_id "Ledus.S1G003400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg9143.t1 is derived from g10173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4826694	4830757	.	-	.	Ledus.S3G062000
Ledus.S3	AUGUSTUS	transcript	4826694	4829512	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	stop_codon	4826691	4826693	.	-	0	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4826694	4826858	1	-	0	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4826694	4826858	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4826859	4826926	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4826927	4827112	1	-	0	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4826927	4827112	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4827113	4827218	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4827219	4827358	1	-	2	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4827219	4827358	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4827359	4827488	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4827489	4827596	1	-	2	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4827489	4827596	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4827597	4827680	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4827681	4827784	1	-	1	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4827681	4827784	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4827785	4827865	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4827866	4828023	1	-	0	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4827866	4828023	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4828024	4828115	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4828116	4828298	1	-	0	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4828116	4828298	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4828299	4828403	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4828404	4828541	1	-	0	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4828404	4828541	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4828542	4828663	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4828664	4828937	0.85	-	1	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4828664	4828937	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4828938	4829018	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4829019	4829087	0.69	-	1	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4829019	4829087	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4829088	4829477	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4829478	4829512	0.26	-	0	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4829478	4829512	.	-	.	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	start_codon	4829510	4829512	.	-	0	transcript_id "Ledus.S3G062000.t1"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	transcript	4826694	4830757	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	stop_codon	4826691	4826693	.	-	0	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4826694	4826858	1	-	0	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4826694	4826858	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4826859	4826926	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4826927	4827112	1	-	0	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4826927	4827112	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4827113	4827218	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4827219	4827358	1	-	2	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4827219	4827358	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4827359	4827488	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4827489	4827596	1	-	2	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4827489	4827596	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4827597	4827680	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4827681	4827784	1	-	1	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4827681	4827784	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4827785	4827865	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4827866	4828023	1	-	0	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4827866	4828023	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4828024	4828115	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4828116	4828298	1	-	0	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4828116	4828298	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4828299	4828403	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4828404	4828541	0.99	-	0	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4828404	4828541	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4828542	4828663	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4828664	4828937	0.53	-	1	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4828664	4828937	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4828938	4829079	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4829080	4829087	0.55	-	0	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4829080	4829087	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4829088	4829294	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4829295	4829421	0.62	-	1	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4829295	4829421	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4829422	4829705	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4829706	4830205	0.81	-	0	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4829706	4830205	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4830206	4830337	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4830338	4830757	1	-	0	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4830338	4830757	.	-	.	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	start_codon	4830755	4830757	.	-	0	transcript_id "Ledus.S3G062000.t2"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	transcript	4829705	4830757	.	-	.	transcript_id "Ledus.S3G062000.t3"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	stop_codon	4829702	4829704	.	-	0	transcript_id "Ledus.S3G062000.t3"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4829705	4830205	0.46	-	0	transcript_id "Ledus.S3G062000.t3"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4829705	4830205	.	-	.	transcript_id "Ledus.S3G062000.t3"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4830206	4830337	.	-	.	transcript_id "Ledus.S3G062000.t3"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4830338	4830757	1	-	0	transcript_id "Ledus.S3G062000.t3"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4830338	4830757	.	-	.	transcript_id "Ledus.S3G062000.t3"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	start_codon	4830755	4830757	.	-	0	transcript_id "Ledus.S3G062000.t3"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	transcript	4826694	4830757	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	stop_codon	4826691	4826693	.	-	0	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4826694	4826858	0.99	-	0	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4826694	4826858	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4826859	4826926	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4826927	4827112	0.99	-	0	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4826927	4827112	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4827113	4827218	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4827219	4827358	1	-	2	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4827219	4827358	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4827359	4827488	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4827489	4827596	1	-	2	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4827489	4827596	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4827597	4827680	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4827681	4827784	1	-	1	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4827681	4827784	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4827785	4827865	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4827866	4828023	1	-	0	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4827866	4828023	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4828024	4828115	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4828116	4828298	1	-	0	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4828116	4828298	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4828299	4828403	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4828404	4828541	0.98	-	0	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4828404	4828541	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4828542	4828663	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4828664	4828937	0.78	-	1	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4828664	4828937	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4828938	4829018	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4829019	4829087	0.55	-	1	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4829019	4829087	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4829088	4829312	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4829313	4829349	0.52	-	2	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4829313	4829349	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4829350	4829477	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4829478	4829572	0.26	-	1	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4829478	4829572	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4829573	4829705	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4829706	4830205	0.85	-	0	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4829706	4830205	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	intron	4830206	4830337	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	CDS	4830338	4830757	1	-	0	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	exon	4830338	4830757	.	-	.	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
Ledus.S3	AUGUSTUS	start_codon	4830755	4830757	.	-	0	transcript_id "Ledus.S3G062000.t4"; gene_id "Ledus.S3G062000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3036.t1 is derived from g471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5433488	5434869	.	+	.	Ledus.S1G045700
Ledus.S1	AUGUSTUS	transcript	5433488	5434869	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	start_codon	5433488	5433490	.	+	0	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	CDS	5433488	5433637	0.67	+	0	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	exon	5433488	5433637	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	intron	5433638	5433725	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	CDS	5433726	5433778	1	+	0	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	exon	5433726	5433778	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	intron	5433779	5433876	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	CDS	5433877	5433986	1	+	1	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	exon	5433877	5433986	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	intron	5433987	5434131	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	CDS	5434132	5434299	1	+	2	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	exon	5434132	5434299	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	intron	5434300	5434385	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	CDS	5434386	5434483	1	+	2	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	exon	5434386	5434483	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	intron	5434484	5434570	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	CDS	5434571	5434697	1	+	0	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	exon	5434571	5434697	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	intron	5434698	5434801	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	CDS	5434802	5434869	1	+	2	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	exon	5434802	5434869	.	+	.	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
Ledus.S1	AUGUSTUS	stop_codon	5434870	5434872	.	+	0	transcript_id "Ledus.S1G045700.t1"; gene_id "Ledus.S1G045700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3919.t1 is derived from g1355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13558258	13564049	.	+	.	Ledus.S1G134000
Ledus.S1	AUGUSTUS	transcript	13558258	13564049	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	start_codon	13558258	13558260	.	+	0	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13558258	13559717	0.83	+	0	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13558258	13559717	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13559718	13559810	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13559811	13559865	1	+	1	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13559811	13559865	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13559866	13559960	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13559961	13560187	1	+	0	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13559961	13560187	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13560188	13560283	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13560284	13560616	1	+	1	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13560284	13560616	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13560617	13560699	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13560700	13560946	1	+	1	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13560700	13560946	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13560947	13561035	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13561036	13561164	1	+	0	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13561036	13561164	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13561165	13561264	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13561265	13561480	1	+	0	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13561265	13561480	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13561481	13561598	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13561599	13561722	1	+	0	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13561599	13561722	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13561723	13561818	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13561819	13562051	0.54	+	2	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13561819	13562051	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13562052	13562326	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13562327	13562452	0.87	+	0	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13562327	13562452	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13562453	13562532	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13562533	13562713	1	+	0	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13562533	13562713	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13562714	13562824	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13562825	13562967	1	+	2	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13562825	13562967	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13562968	13563067	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13563068	13563131	1	+	0	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13563068	13563131	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13563132	13563208	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13563209	13563261	1	+	2	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13563209	13563261	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13563262	13563358	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13563359	13563414	0.92	+	0	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13563359	13563414	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13563415	13563502	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13563503	13563595	0.63	+	1	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13563503	13563595	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13563596	13563682	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13563683	13563877	1	+	1	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13563683	13563877	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13563878	13563961	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13563962	13564049	1	+	1	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13563962	13564049	.	+	.	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	stop_codon	13564050	13564052	.	+	0	transcript_id "Ledus.S1G134000.t1"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	transcript	13558258	13564049	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	start_codon	13558258	13558260	.	+	0	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13558258	13559717	0.82	+	0	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13558258	13559717	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13559718	13559810	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13559811	13559865	1	+	1	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13559811	13559865	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13559866	13559960	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13559961	13560187	1	+	0	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13559961	13560187	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13560188	13560283	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13560284	13560616	1	+	1	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13560284	13560616	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13560617	13560699	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13560700	13560946	1	+	1	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13560700	13560946	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13560947	13561035	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13561036	13561164	1	+	0	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13561036	13561164	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13561165	13561264	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13561265	13561480	1	+	0	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13561265	13561480	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13561481	13561598	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13561599	13561722	1	+	0	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13561599	13561722	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13561723	13561818	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13561819	13562051	0.58	+	2	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13561819	13562051	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13562052	13562326	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13562327	13562452	0.87	+	0	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13562327	13562452	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13562453	13562529	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13562530	13562713	1	+	0	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13562530	13562713	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13562714	13562824	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13562825	13562967	1	+	2	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13562825	13562967	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13562968	13563067	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13563068	13563131	1	+	0	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13563068	13563131	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13563132	13563208	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13563209	13563261	1	+	2	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13563209	13563261	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13563262	13563358	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13563359	13563414	0.9	+	0	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13563359	13563414	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13563415	13563502	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13563503	13563595	0.51	+	1	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13563503	13563595	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13563596	13563682	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13563683	13563877	0.99	+	1	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13563683	13563877	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	intron	13563878	13563961	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	CDS	13563962	13564049	1	+	1	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	exon	13563962	13564049	.	+	.	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
Ledus.S1	AUGUSTUS	stop_codon	13564050	13564052	.	+	0	transcript_id "Ledus.S1G134000.t2"; gene_id "Ledus.S1G134000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg117.t1 is derived from g6459.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C15	AUGUSTUS	gene	17389	19561	.	+	.	Ledus.C15G000100
Ledus.C15	AUGUSTUS	transcript	17389	19561	.	+	.	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	start_codon	17389	17391	.	+	0	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	CDS	17389	17776	0.52	+	0	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	exon	17389	17776	.	+	.	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	intron	17777	17894	.	+	.	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	CDS	17895	18098	0.91	+	2	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	exon	17895	18098	.	+	.	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	intron	18099	18295	.	+	.	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	CDS	18296	18432	1	+	2	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	exon	18296	18432	.	+	.	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	intron	18433	18562	.	+	.	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	CDS	18563	18823	1	+	0	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	exon	18563	18823	.	+	.	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	intron	18824	18975	.	+	.	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	CDS	18976	19231	0.94	+	0	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	exon	18976	19231	.	+	.	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	intron	19232	19337	.	+	.	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	CDS	19338	19561	0.74	+	2	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	exon	19338	19561	.	+	.	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
Ledus.C15	AUGUSTUS	stop_codon	19562	19564	.	+	0	transcript_id "Ledus.C15G000100.t1"; gene_id "Ledus.C15G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10351.t1 is derived from g11381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14363433	14364404	.	+	.	Ledus.S3G182800
Ledus.S3	AUGUSTUS	transcript	14363433	14364404	.	+	.	transcript_id "Ledus.S3G182800.t1"; gene_id "Ledus.S3G182800"
Ledus.S3	AUGUSTUS	start_codon	14363433	14363435	.	+	0	transcript_id "Ledus.S3G182800.t1"; gene_id "Ledus.S3G182800"
Ledus.S3	AUGUSTUS	CDS	14363433	14364404	1	+	0	transcript_id "Ledus.S3G182800.t1"; gene_id "Ledus.S3G182800"
Ledus.S3	AUGUSTUS	exon	14363433	14364404	.	+	.	transcript_id "Ledus.S3G182800.t1"; gene_id "Ledus.S3G182800"
Ledus.S3	AUGUSTUS	stop_codon	14364405	14364407	.	+	0	transcript_id "Ledus.S3G182800.t1"; gene_id "Ledus.S3G182800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg783.t1 is derived from g7644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5075885	5076637	.	+	.	Ledus.S2G066500
Ledus.S2	AUGUSTUS	transcript	5075885	5076637	.	+	.	transcript_id "Ledus.S2G066500.t1"; gene_id "Ledus.S2G066500"
Ledus.S2	AUGUSTUS	start_codon	5075885	5075887	.	+	0	transcript_id "Ledus.S2G066500.t1"; gene_id "Ledus.S2G066500"
Ledus.S2	AUGUSTUS	CDS	5075885	5076211	0.74	+	0	transcript_id "Ledus.S2G066500.t1"; gene_id "Ledus.S2G066500"
Ledus.S2	AUGUSTUS	exon	5075885	5076211	.	+	.	transcript_id "Ledus.S2G066500.t1"; gene_id "Ledus.S2G066500"
Ledus.S2	AUGUSTUS	intron	5076212	5076275	.	+	.	transcript_id "Ledus.S2G066500.t1"; gene_id "Ledus.S2G066500"
Ledus.S2	AUGUSTUS	CDS	5076276	5076404	1	+	0	transcript_id "Ledus.S2G066500.t1"; gene_id "Ledus.S2G066500"
Ledus.S2	AUGUSTUS	exon	5076276	5076404	.	+	.	transcript_id "Ledus.S2G066500.t1"; gene_id "Ledus.S2G066500"
Ledus.S2	AUGUSTUS	intron	5076405	5076484	.	+	.	transcript_id "Ledus.S2G066500.t1"; gene_id "Ledus.S2G066500"
Ledus.S2	AUGUSTUS	CDS	5076485	5076637	1	+	0	transcript_id "Ledus.S2G066500.t1"; gene_id "Ledus.S2G066500"
Ledus.S2	AUGUSTUS	exon	5076485	5076637	.	+	.	transcript_id "Ledus.S2G066500.t1"; gene_id "Ledus.S2G066500"
Ledus.S2	AUGUSTUS	stop_codon	5076638	5076640	.	+	0	transcript_id "Ledus.S2G066500.t1"; gene_id "Ledus.S2G066500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9212.t1 is derived from g10242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5428623	5432297	.	+	.	Ledus.S3G068900
Ledus.S3	AUGUSTUS	transcript	5428623	5432297	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	start_codon	5428623	5428625	.	+	0	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5428623	5428700	0.98	+	0	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5428623	5428700	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5428701	5428795	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5428796	5428867	1	+	0	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5428796	5428867	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5428868	5428957	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5428958	5429037	1	+	0	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5428958	5429037	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5429038	5429137	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5429138	5429363	1	+	1	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5429138	5429363	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5429364	5429543	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5429544	5429576	1	+	0	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5429544	5429576	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5429577	5429673	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5429674	5429756	1	+	0	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5429674	5429756	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5429757	5429953	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5429954	5430026	1	+	1	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5429954	5430026	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5430027	5430175	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5430176	5430539	1	+	0	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5430176	5430539	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5430540	5430713	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5430714	5431045	1	+	2	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5430714	5431045	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5431046	5431129	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5431130	5431194	0.83	+	0	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5431130	5431194	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5431195	5431304	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5431305	5431345	0.75	+	1	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5431305	5431345	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5431346	5431412	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5431413	5431476	0.95	+	2	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5431413	5431476	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5431477	5431572	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5431573	5432008	1	+	1	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5431573	5432008	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	intron	5432009	5432093	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	CDS	5432094	5432297	0.99	+	0	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	exon	5432094	5432297	.	+	.	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
Ledus.S3	AUGUSTUS	stop_codon	5432298	5432300	.	+	0	transcript_id "Ledus.S3G068900.t1"; gene_id "Ledus.S3G068900"
# This transcript jg8600.t2 is derived from g9630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8601.t1 is derived from g9631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	511152	516103	.	-	.	Ledus.S3G007800
Ledus.S3	AUGUSTUS	transcript	511152	516103	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	stop_codon	511149	511151	.	-	0	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	CDS	511152	512722	0.98	-	2	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	exon	511152	512722	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	intron	512723	512882	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	CDS	512883	512985	1	-	0	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	exon	512883	512985	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	intron	512986	513081	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	CDS	513082	513095	1	-	2	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	exon	513082	513095	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	intron	513096	513213	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	CDS	513214	513449	1	-	1	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	exon	513214	513449	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	intron	513450	513538	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	CDS	513539	513572	1	-	2	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	exon	513539	513572	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	intron	513573	513660	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	CDS	513661	513676	1	-	0	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	exon	513661	513676	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	intron	513677	513859	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	CDS	513860	513879	1	-	2	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	exon	513860	513879	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	intron	513880	513963	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	CDS	513964	514291	0.57	-	0	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	exon	513964	514291	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	intron	514292	514435	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	CDS	514436	514689	0.99	-	2	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	exon	514436	514689	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	intron	514690	514814	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	CDS	514815	515175	0.93	-	0	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	exon	514815	515175	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	intron	515176	515301	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	CDS	515302	515777	0.96	-	2	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	exon	515302	515777	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	intron	515778	515940	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	CDS	515941	516103	0.98	-	0	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	exon	515941	516103	.	-	.	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
Ledus.S3	AUGUSTUS	start_codon	516101	516103	.	-	0	transcript_id "Ledus.S3G007800.t1"; gene_id "Ledus.S3G007800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10884.t1 is derived from g4502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	313157	315908	.	+	.	Ledus.S4G004000
Ledus.S4	AUGUSTUS	transcript	313157	315908	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	start_codon	313157	313159	.	+	0	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	313157	313309	0.96	+	0	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	313157	313309	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	intron	313310	313399	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	313400	313525	1	+	0	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	313400	313525	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	intron	313526	313674	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	313675	313830	1	+	0	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	313675	313830	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	intron	313831	313923	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	313924	314103	1	+	0	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	313924	314103	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	intron	314104	314190	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	314191	314307	1	+	0	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	314191	314307	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	intron	314308	314454	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	314455	314508	1	+	0	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	314455	314508	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	intron	314509	314599	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	314600	314671	1	+	0	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	314600	314671	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	intron	314672	314786	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	314787	314895	1	+	0	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	314787	314895	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	intron	314896	315039	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	315040	315136	0.94	+	2	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	315040	315136	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	intron	315137	315251	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	315252	315346	0.95	+	1	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	315252	315346	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	intron	315347	315439	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	315440	315514	1	+	2	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	315440	315514	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	intron	315515	315607	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	315608	315691	0.99	+	2	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	315608	315691	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	intron	315692	315798	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	CDS	315799	315908	0.93	+	2	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	exon	315799	315908	.	+	.	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
Ledus.S4	AUGUSTUS	stop_codon	315909	315911	.	+	0	transcript_id "Ledus.S4G004000.t1"; gene_id "Ledus.S4G004000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7654.t1 is derived from g12325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4825014	4825896	.	-	.	Ledus.S5G043200
Ledus.S5	AUGUSTUS	transcript	4825014	4825896	.	-	.	transcript_id "Ledus.S5G043200.t1"; gene_id "Ledus.S5G043200"
Ledus.S5	AUGUSTUS	stop_codon	4825011	4825013	.	-	0	transcript_id "Ledus.S5G043200.t1"; gene_id "Ledus.S5G043200"
Ledus.S5	AUGUSTUS	CDS	4825014	4825212	0.65	-	1	transcript_id "Ledus.S5G043200.t1"; gene_id "Ledus.S5G043200"
Ledus.S5	AUGUSTUS	exon	4825014	4825212	.	-	.	transcript_id "Ledus.S5G043200.t1"; gene_id "Ledus.S5G043200"
Ledus.S5	AUGUSTUS	intron	4825213	4825341	.	-	.	transcript_id "Ledus.S5G043200.t1"; gene_id "Ledus.S5G043200"
Ledus.S5	AUGUSTUS	CDS	4825342	4825445	1	-	0	transcript_id "Ledus.S5G043200.t1"; gene_id "Ledus.S5G043200"
Ledus.S5	AUGUSTUS	exon	4825342	4825445	.	-	.	transcript_id "Ledus.S5G043200.t1"; gene_id "Ledus.S5G043200"
Ledus.S5	AUGUSTUS	intron	4825446	4825536	.	-	.	transcript_id "Ledus.S5G043200.t1"; gene_id "Ledus.S5G043200"
Ledus.S5	AUGUSTUS	CDS	4825537	4825896	0.97	-	0	transcript_id "Ledus.S5G043200.t1"; gene_id "Ledus.S5G043200"
Ledus.S5	AUGUSTUS	exon	4825537	4825896	.	-	.	transcript_id "Ledus.S5G043200.t1"; gene_id "Ledus.S5G043200"
Ledus.S5	AUGUSTUS	start_codon	4825894	4825896	.	-	0	transcript_id "Ledus.S5G043200.t1"; gene_id "Ledus.S5G043200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1965.t1 is derived from g8828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13846440	13849910	.	-	.	Ledus.S2G184700
Ledus.S2	AUGUSTUS	transcript	13846440	13849910	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	stop_codon	13846437	13846439	.	-	0	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13846440	13846559	0.59	-	0	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13846440	13846559	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	intron	13846560	13846658	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13846659	13846809	1	-	1	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13846659	13846809	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	intron	13846810	13846910	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13846911	13847023	1	-	0	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13846911	13847023	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	intron	13847024	13847241	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13847242	13847353	1	-	1	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13847242	13847353	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	intron	13847354	13847497	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13847498	13847713	1	-	1	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13847498	13847713	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	intron	13847714	13847832	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13847833	13847954	1	-	0	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13847833	13847954	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	intron	13847955	13848094	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13848095	13848166	1	-	0	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13848095	13848166	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	intron	13848167	13848358	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13848359	13848585	1	-	2	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13848359	13848585	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	intron	13848586	13848666	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13848667	13848842	1	-	1	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13848667	13848842	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	intron	13848843	13848983	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13848984	13849090	1	-	0	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13848984	13849090	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	intron	13849091	13849222	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13849223	13849565	1	-	1	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13849223	13849565	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	intron	13849566	13849652	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13849653	13849699	1	-	0	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13849653	13849699	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	intron	13849700	13849835	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	CDS	13849836	13849910	1	-	0	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	exon	13849836	13849910	.	-	.	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
Ledus.S2	AUGUSTUS	start_codon	13849908	13849910	.	-	0	transcript_id "Ledus.S2G184700.t1"; gene_id "Ledus.S2G184700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10633.t1 is derived from g11663.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16626240	16634370	.	-	.	Ledus.S3G211000
Ledus.S3	AUGUSTUS	transcript	16626240	16634370	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	stop_codon	16626237	16626239	.	-	0	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16626240	16626348	0.95	-	1	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16626240	16626348	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16626349	16626581	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16626582	16626658	0.62	-	0	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16626582	16626658	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16626659	16627040	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16627041	16627079	0.96	-	0	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16627041	16627079	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16627080	16627227	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16627228	16627370	1	-	2	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16627228	16627370	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16627371	16627604	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16627605	16627646	1	-	2	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16627605	16627646	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16627647	16627990	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16627991	16628052	1	-	1	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16627991	16628052	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16628053	16628198	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16628199	16628388	1	-	2	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16628199	16628388	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16628389	16628711	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16628712	16628851	1	-	1	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16628712	16628851	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16628852	16628973	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16628974	16629034	1	-	2	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16628974	16629034	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16629035	16629163	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16629164	16629232	1	-	2	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16629164	16629232	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16629233	16629350	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16629351	16629454	1	-	1	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16629351	16629454	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16629455	16629545	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16629546	16629584	1	-	1	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16629546	16629584	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16629585	16629679	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16629680	16630005	1	-	0	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16629680	16630005	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16630006	16630162	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16630163	16630393	0.83	-	0	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16630163	16630393	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16630394	16630761	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16630762	16630799	0.85	-	2	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16630762	16630799	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16630800	16630915	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16630916	16630973	0.98	-	0	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16630916	16630973	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16630974	16631056	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16631057	16631115	1	-	2	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16631057	16631115	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16631116	16631260	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16631261	16631342	1	-	0	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16631261	16631342	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16631343	16631409	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16631410	16633140	1	-	0	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16631410	16633140	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16633141	16633269	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16633270	16633414	1	-	1	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16633270	16633414	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16633415	16633546	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16633547	16633653	1	-	0	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16633547	16633653	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	intron	16633654	16633743	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	CDS	16633744	16634370	0.65	-	0	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	exon	16633744	16634370	.	-	.	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
Ledus.S3	AUGUSTUS	start_codon	16634368	16634370	.	-	0	transcript_id "Ledus.S3G211000.t1"; gene_id "Ledus.S3G211000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1768.t1 is derived from g8630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12417631	12419728	.	-	.	Ledus.S2G165000
Ledus.S2	AUGUSTUS	transcript	12417631	12419728	.	-	.	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	stop_codon	12417628	12417630	.	-	0	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	CDS	12417631	12418199	1	-	2	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	exon	12417631	12418199	.	-	.	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	intron	12418200	12418271	.	-	.	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	CDS	12418272	12418503	1	-	0	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	exon	12418272	12418503	.	-	.	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	intron	12418504	12418585	.	-	.	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	CDS	12418586	12418934	1	-	1	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	exon	12418586	12418934	.	-	.	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	intron	12418935	12419029	.	-	.	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	CDS	12419030	12419255	1	-	2	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	exon	12419030	12419255	.	-	.	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	intron	12419256	12419349	.	-	.	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	CDS	12419350	12419728	1	-	0	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	exon	12419350	12419728	.	-	.	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
Ledus.S2	AUGUSTUS	start_codon	12419726	12419728	.	-	0	transcript_id "Ledus.S2G165000.t1"; gene_id "Ledus.S2G165000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11882.t1 is derived from g5501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7524317	7525362	.	+	.	Ledus.S4G103800
Ledus.S4	AUGUSTUS	transcript	7524317	7525362	.	+	.	transcript_id "Ledus.S4G103800.t1"; gene_id "Ledus.S4G103800"
Ledus.S4	AUGUSTUS	start_codon	7524317	7524319	.	+	0	transcript_id "Ledus.S4G103800.t1"; gene_id "Ledus.S4G103800"
Ledus.S4	AUGUSTUS	CDS	7524317	7524615	0.93	+	0	transcript_id "Ledus.S4G103800.t1"; gene_id "Ledus.S4G103800"
Ledus.S4	AUGUSTUS	exon	7524317	7524615	.	+	.	transcript_id "Ledus.S4G103800.t1"; gene_id "Ledus.S4G103800"
Ledus.S4	AUGUSTUS	intron	7524616	7524679	.	+	.	transcript_id "Ledus.S4G103800.t1"; gene_id "Ledus.S4G103800"
Ledus.S4	AUGUSTUS	CDS	7524680	7524911	1	+	1	transcript_id "Ledus.S4G103800.t1"; gene_id "Ledus.S4G103800"
Ledus.S4	AUGUSTUS	exon	7524680	7524911	.	+	.	transcript_id "Ledus.S4G103800.t1"; gene_id "Ledus.S4G103800"
Ledus.S4	AUGUSTUS	intron	7524912	7524981	.	+	.	transcript_id "Ledus.S4G103800.t1"; gene_id "Ledus.S4G103800"
Ledus.S4	AUGUSTUS	CDS	7524982	7525362	0.93	+	0	transcript_id "Ledus.S4G103800.t1"; gene_id "Ledus.S4G103800"
Ledus.S4	AUGUSTUS	exon	7524982	7525362	.	+	.	transcript_id "Ledus.S4G103800.t1"; gene_id "Ledus.S4G103800"
Ledus.S4	AUGUSTUS	stop_codon	7525363	7525365	.	+	0	transcript_id "Ledus.S4G103800.t1"; gene_id "Ledus.S4G103800"
# This transcript jg11299.t2 is derived from g4917.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11300.t1 is derived from g4918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3467969	3468280	.	-	.	Ledus.S4G045600
Ledus.S4	AUGUSTUS	transcript	3467969	3468280	.	-	.	transcript_id "Ledus.S4G045600.t1"; gene_id "Ledus.S4G045600"
Ledus.S4	AUGUSTUS	stop_codon	3467966	3467968	.	-	0	transcript_id "Ledus.S4G045600.t1"; gene_id "Ledus.S4G045600"
Ledus.S4	AUGUSTUS	CDS	3467969	3468280	1	-	0	transcript_id "Ledus.S4G045600.t1"; gene_id "Ledus.S4G045600"
Ledus.S4	AUGUSTUS	exon	3467969	3468280	.	-	.	transcript_id "Ledus.S4G045600.t1"; gene_id "Ledus.S4G045600"
Ledus.S4	AUGUSTUS	start_codon	3468278	3468280	.	-	0	transcript_id "Ledus.S4G045600.t1"; gene_id "Ledus.S4G045600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg848.t1 is derived from g7709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5665563	5668144	.	-	.	Ledus.S2G073000
Ledus.S2	AUGUSTUS	transcript	5665563	5667803	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	stop_codon	5665560	5665562	.	-	0	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5665563	5665655	0.97	-	0	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5665563	5665655	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5665656	5665765	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5665766	5665863	0.93	-	2	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5665766	5665863	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5665864	5665946	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5665947	5666115	1	-	0	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5665947	5666115	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5666116	5666241	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5666242	5666294	1	-	2	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5666242	5666294	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5666295	5666384	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5666385	5666440	1	-	1	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5666385	5666440	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5666441	5666569	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5666570	5666733	1	-	0	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5666570	5666733	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5666734	5666813	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5666814	5667056	1	-	0	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5666814	5667056	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5667057	5667131	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5667132	5667202	1	-	2	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5667132	5667202	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5667203	5667303	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5667304	5667371	1	-	1	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5667304	5667371	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5667372	5667466	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5667467	5667598	1	-	1	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5667467	5667598	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5667599	5667696	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5667697	5667803	0.94	-	0	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5667697	5667803	.	-	.	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	start_codon	5667801	5667803	.	-	0	transcript_id "Ledus.S2G073000.t1"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	transcript	5665563	5668144	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	stop_codon	5665560	5665562	.	-	0	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5665563	5665655	0.96	-	0	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5665563	5665655	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5665656	5665765	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5665766	5665863	0.92	-	2	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5665766	5665863	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5665864	5665946	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5665947	5666115	1	-	0	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5665947	5666115	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5666116	5666241	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5666242	5666294	1	-	2	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5666242	5666294	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5666295	5666384	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5666385	5666440	1	-	1	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5666385	5666440	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5666441	5666569	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5666570	5666733	0.99	-	0	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5666570	5666733	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5666734	5666813	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5666814	5667056	1	-	0	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5666814	5667056	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5667057	5667131	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5667132	5667202	1	-	2	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5667132	5667202	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5667203	5667303	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5667304	5667371	1	-	1	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5667304	5667371	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5667372	5667466	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5667467	5667608	1	-	2	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5667467	5667608	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	intron	5667609	5667903	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	CDS	5667904	5668144	0.54	-	0	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	exon	5667904	5668144	.	-	.	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
Ledus.S2	AUGUSTUS	start_codon	5668142	5668144	.	-	0	transcript_id "Ledus.S2G073000.t2"; gene_id "Ledus.S2G073000"
# This transcript jg5479.t2 is derived from g2918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5480.t1 is derived from g2919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24483763	24485664	.	-	.	Ledus.S1G290100
Ledus.S1	AUGUSTUS	transcript	24483763	24485664	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	stop_codon	24483760	24483762	.	-	0	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	CDS	24483763	24483801	1	-	0	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	exon	24483763	24483801	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	intron	24483802	24483892	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	CDS	24483893	24484033	1	-	0	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	exon	24483893	24484033	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	intron	24484034	24484120	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	CDS	24484121	24484228	1	-	0	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	exon	24484121	24484228	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	intron	24484229	24484313	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	CDS	24484314	24484361	1	-	0	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	exon	24484314	24484361	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	intron	24484362	24484476	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	CDS	24484477	24484692	1	-	0	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	exon	24484477	24484692	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	intron	24484693	24484786	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	CDS	24484787	24484851	0.98	-	2	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	exon	24484787	24484851	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	intron	24484852	24484955	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	CDS	24484956	24485080	1	-	1	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	exon	24484956	24485080	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	intron	24485081	24485180	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	CDS	24485181	24485370	1	-	2	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	exon	24485181	24485370	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	intron	24485371	24485501	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	CDS	24485502	24485664	1	-	0	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	exon	24485502	24485664	.	-	.	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
Ledus.S1	AUGUSTUS	start_codon	24485662	24485664	.	-	0	transcript_id "Ledus.S1G290100.t1"; gene_id "Ledus.S1G290100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5498.t1 is derived from g2937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24638101	24638630	.	+	.	Ledus.S1G291900
Ledus.S1	AUGUSTUS	transcript	24638101	24638630	.	+	.	transcript_id "Ledus.S1G291900.t1"; gene_id "Ledus.S1G291900"
Ledus.S1	AUGUSTUS	start_codon	24638101	24638103	.	+	0	transcript_id "Ledus.S1G291900.t1"; gene_id "Ledus.S1G291900"
Ledus.S1	AUGUSTUS	CDS	24638101	24638163	0.99	+	0	transcript_id "Ledus.S1G291900.t1"; gene_id "Ledus.S1G291900"
Ledus.S1	AUGUSTUS	exon	24638101	24638163	.	+	.	transcript_id "Ledus.S1G291900.t1"; gene_id "Ledus.S1G291900"
Ledus.S1	AUGUSTUS	intron	24638164	24638243	.	+	.	transcript_id "Ledus.S1G291900.t1"; gene_id "Ledus.S1G291900"
Ledus.S1	AUGUSTUS	CDS	24638244	24638349	1	+	0	transcript_id "Ledus.S1G291900.t1"; gene_id "Ledus.S1G291900"
Ledus.S1	AUGUSTUS	exon	24638244	24638349	.	+	.	transcript_id "Ledus.S1G291900.t1"; gene_id "Ledus.S1G291900"
Ledus.S1	AUGUSTUS	intron	24638350	24638463	.	+	.	transcript_id "Ledus.S1G291900.t1"; gene_id "Ledus.S1G291900"
Ledus.S1	AUGUSTUS	CDS	24638464	24638630	0.97	+	2	transcript_id "Ledus.S1G291900.t1"; gene_id "Ledus.S1G291900"
Ledus.S1	AUGUSTUS	exon	24638464	24638630	.	+	.	transcript_id "Ledus.S1G291900.t1"; gene_id "Ledus.S1G291900"
Ledus.S1	AUGUSTUS	stop_codon	24638631	24638633	.	+	0	transcript_id "Ledus.S1G291900.t1"; gene_id "Ledus.S1G291900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4746.t1 is derived from g2184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19528701	19529428	.	+	.	Ledus.S1G216700
Ledus.S1	AUGUSTUS	transcript	19528701	19529428	.	+	.	transcript_id "Ledus.S1G216700.t1"; gene_id "Ledus.S1G216700"
Ledus.S1	AUGUSTUS	start_codon	19528701	19528703	.	+	0	transcript_id "Ledus.S1G216700.t1"; gene_id "Ledus.S1G216700"
Ledus.S1	AUGUSTUS	CDS	19528701	19529143	1	+	0	transcript_id "Ledus.S1G216700.t1"; gene_id "Ledus.S1G216700"
Ledus.S1	AUGUSTUS	exon	19528701	19529143	.	+	.	transcript_id "Ledus.S1G216700.t1"; gene_id "Ledus.S1G216700"
Ledus.S1	AUGUSTUS	intron	19529144	19529316	.	+	.	transcript_id "Ledus.S1G216700.t1"; gene_id "Ledus.S1G216700"
Ledus.S1	AUGUSTUS	CDS	19529317	19529428	1	+	1	transcript_id "Ledus.S1G216700.t1"; gene_id "Ledus.S1G216700"
Ledus.S1	AUGUSTUS	exon	19529317	19529428	.	+	.	transcript_id "Ledus.S1G216700.t1"; gene_id "Ledus.S1G216700"
Ledus.S1	AUGUSTUS	stop_codon	19529429	19529431	.	+	0	transcript_id "Ledus.S1G216700.t1"; gene_id "Ledus.S1G216700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8522.t1 is derived from g13194.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12453625	12457398	.	+	.	Ledus.S5G130000
Ledus.S5	AUGUSTUS	transcript	12453625	12457398	.	+	.	transcript_id "Ledus.S5G130000.t1"; gene_id "Ledus.S5G130000"
Ledus.S5	AUGUSTUS	start_codon	12453625	12453627	.	+	0	transcript_id "Ledus.S5G130000.t1"; gene_id "Ledus.S5G130000"
Ledus.S5	AUGUSTUS	CDS	12453625	12457398	1	+	0	transcript_id "Ledus.S5G130000.t1"; gene_id "Ledus.S5G130000"
Ledus.S5	AUGUSTUS	exon	12453625	12457398	.	+	.	transcript_id "Ledus.S5G130000.t1"; gene_id "Ledus.S5G130000"
Ledus.S5	AUGUSTUS	stop_codon	12457399	12457401	.	+	0	transcript_id "Ledus.S5G130000.t1"; gene_id "Ledus.S5G130000"
Ledus.S5	AUGUSTUS	transcript	12456064	12457398	.	+	.	transcript_id "Ledus.S5G130000.t2"; gene_id "Ledus.S5G130000"
Ledus.S5	AUGUSTUS	start_codon	12456064	12456066	.	+	0	transcript_id "Ledus.S5G130000.t2"; gene_id "Ledus.S5G130000"
Ledus.S5	AUGUSTUS	CDS	12456064	12457398	1	+	0	transcript_id "Ledus.S5G130000.t2"; gene_id "Ledus.S5G130000"
Ledus.S5	AUGUSTUS	exon	12456064	12457398	.	+	.	transcript_id "Ledus.S5G130000.t2"; gene_id "Ledus.S5G130000"
Ledus.S5	AUGUSTUS	stop_codon	12457399	12457401	.	+	0	transcript_id "Ledus.S5G130000.t2"; gene_id "Ledus.S5G130000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9497.t1 is derived from g10527.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7443416	7444861	.	-	.	Ledus.S3G097400
Ledus.S3	AUGUSTUS	transcript	7443416	7444861	.	-	.	transcript_id "Ledus.S3G097400.t1"; gene_id "Ledus.S3G097400"
Ledus.S3	AUGUSTUS	stop_codon	7443413	7443415	.	-	0	transcript_id "Ledus.S3G097400.t1"; gene_id "Ledus.S3G097400"
Ledus.S3	AUGUSTUS	CDS	7443416	7444861	0.74	-	0	transcript_id "Ledus.S3G097400.t1"; gene_id "Ledus.S3G097400"
Ledus.S3	AUGUSTUS	exon	7443416	7444861	.	-	.	transcript_id "Ledus.S3G097400.t1"; gene_id "Ledus.S3G097400"
Ledus.S3	AUGUSTUS	start_codon	7444859	7444861	.	-	0	transcript_id "Ledus.S3G097400.t1"; gene_id "Ledus.S3G097400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5941.t1 is derived from g3384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27957956	27958219	.	-	.	Ledus.S1G336200
Ledus.S1	AUGUSTUS	transcript	27957956	27958219	.	-	.	transcript_id "Ledus.S1G336200.t1"; gene_id "Ledus.S1G336200"
Ledus.S1	AUGUSTUS	stop_codon	27957953	27957955	.	-	0	transcript_id "Ledus.S1G336200.t1"; gene_id "Ledus.S1G336200"
Ledus.S1	AUGUSTUS	CDS	27957956	27958219	0.99	-	0	transcript_id "Ledus.S1G336200.t1"; gene_id "Ledus.S1G336200"
Ledus.S1	AUGUSTUS	exon	27957956	27958219	.	-	.	transcript_id "Ledus.S1G336200.t1"; gene_id "Ledus.S1G336200"
Ledus.S1	AUGUSTUS	start_codon	27958217	27958219	.	-	0	transcript_id "Ledus.S1G336200.t1"; gene_id "Ledus.S1G336200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1538.t1 is derived from g8399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10848515	10848865	.	-	.	Ledus.S2G142000
Ledus.S2	AUGUSTUS	transcript	10848515	10848865	.	-	.	transcript_id "Ledus.S2G142000.t1"; gene_id "Ledus.S2G142000"
Ledus.S2	AUGUSTUS	stop_codon	10848512	10848514	.	-	0	transcript_id "Ledus.S2G142000.t1"; gene_id "Ledus.S2G142000"
Ledus.S2	AUGUSTUS	CDS	10848515	10848865	0.62	-	0	transcript_id "Ledus.S2G142000.t1"; gene_id "Ledus.S2G142000"
Ledus.S2	AUGUSTUS	exon	10848515	10848865	.	-	.	transcript_id "Ledus.S2G142000.t1"; gene_id "Ledus.S2G142000"
Ledus.S2	AUGUSTUS	start_codon	10848863	10848865	.	-	0	transcript_id "Ledus.S2G142000.t1"; gene_id "Ledus.S2G142000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10740.t1 is derived from g11771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17423037	17426107	.	+	.	Ledus.S3G221700
Ledus.S3	AUGUSTUS	transcript	17423037	17426107	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	start_codon	17423037	17423039	.	+	0	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	CDS	17423037	17423052	0.81	+	0	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	exon	17423037	17423052	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	intron	17423053	17423194	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	CDS	17423195	17423220	0.76	+	2	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	exon	17423195	17423220	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	intron	17423221	17423535	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	CDS	17423536	17423775	0.93	+	0	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	exon	17423536	17423775	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	intron	17423776	17423945	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	CDS	17423946	17424110	1	+	0	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	exon	17423946	17424110	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	intron	17424111	17424249	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	CDS	17424250	17424406	0.99	+	0	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	exon	17424250	17424406	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	intron	17424407	17424521	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	CDS	17424522	17424607	1	+	2	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	exon	17424522	17424607	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	intron	17424608	17424713	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	CDS	17424714	17424913	1	+	0	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	exon	17424714	17424913	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	intron	17424914	17425027	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	CDS	17425028	17425076	1	+	1	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	exon	17425028	17425076	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	intron	17425077	17425281	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	CDS	17425282	17425512	1	+	0	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	exon	17425282	17425512	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	intron	17425513	17425599	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	CDS	17425600	17425806	1	+	0	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	exon	17425600	17425806	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	intron	17425807	17425924	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	CDS	17425925	17426107	1	+	0	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	exon	17425925	17426107	.	+	.	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
Ledus.S3	AUGUSTUS	stop_codon	17426108	17426110	.	+	0	transcript_id "Ledus.S3G221700.t1"; gene_id "Ledus.S3G221700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7442.t1 is derived from g12113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2704983	2706004	.	+	.	Ledus.S5G022000
Ledus.S5	AUGUSTUS	transcript	2704983	2706004	.	+	.	transcript_id "Ledus.S5G022000.t1"; gene_id "Ledus.S5G022000"
Ledus.S5	AUGUSTUS	start_codon	2704983	2704985	.	+	0	transcript_id "Ledus.S5G022000.t1"; gene_id "Ledus.S5G022000"
Ledus.S5	AUGUSTUS	CDS	2704983	2705137	0.16	+	0	transcript_id "Ledus.S5G022000.t1"; gene_id "Ledus.S5G022000"
Ledus.S5	AUGUSTUS	exon	2704983	2705137	.	+	.	transcript_id "Ledus.S5G022000.t1"; gene_id "Ledus.S5G022000"
Ledus.S5	AUGUSTUS	intron	2705138	2705248	.	+	.	transcript_id "Ledus.S5G022000.t1"; gene_id "Ledus.S5G022000"
Ledus.S5	AUGUSTUS	CDS	2705249	2705355	0.4	+	1	transcript_id "Ledus.S5G022000.t1"; gene_id "Ledus.S5G022000"
Ledus.S5	AUGUSTUS	exon	2705249	2705355	.	+	.	transcript_id "Ledus.S5G022000.t1"; gene_id "Ledus.S5G022000"
Ledus.S5	AUGUSTUS	intron	2705356	2705426	.	+	.	transcript_id "Ledus.S5G022000.t1"; gene_id "Ledus.S5G022000"
Ledus.S5	AUGUSTUS	CDS	2705427	2706004	0.36	+	2	transcript_id "Ledus.S5G022000.t1"; gene_id "Ledus.S5G022000"
Ledus.S5	AUGUSTUS	exon	2705427	2706004	.	+	.	transcript_id "Ledus.S5G022000.t1"; gene_id "Ledus.S5G022000"
Ledus.S5	AUGUSTUS	stop_codon	2706005	2706007	.	+	0	transcript_id "Ledus.S5G022000.t1"; gene_id "Ledus.S5G022000"
# This transcript jg12817.t2 is derived from g6439.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12817.t3 is derived from g6439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12818.t1 is derived from g6440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15040428	15042895	.	+	.	Ledus.S4G197400
Ledus.S4	AUGUSTUS	transcript	15040428	15042895	.	+	.	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	start_codon	15040428	15040430	.	+	0	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	CDS	15040428	15041653	0.99	+	0	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	exon	15040428	15041653	.	+	.	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	intron	15041654	15041736	.	+	.	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	CDS	15041737	15041887	1	+	1	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	exon	15041737	15041887	.	+	.	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	intron	15041888	15042088	.	+	.	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	CDS	15042089	15042370	1	+	0	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	exon	15042089	15042370	.	+	.	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	intron	15042371	15042523	.	+	.	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	CDS	15042524	15042673	1	+	0	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	exon	15042524	15042673	.	+	.	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	intron	15042674	15042770	.	+	.	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	CDS	15042771	15042818	0.88	+	0	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	exon	15042771	15042818	.	+	.	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	intron	15042819	15042889	.	+	.	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	CDS	15042890	15042895	0.84	+	0	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	exon	15042890	15042895	.	+	.	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
Ledus.S4	AUGUSTUS	stop_codon	15042896	15042898	.	+	0	transcript_id "Ledus.S4G197400.t1"; gene_id "Ledus.S4G197400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2395.t1 is derived from g9258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17864164	17865912	.	+	.	Ledus.S2G227700
Ledus.S2	AUGUSTUS	transcript	17864164	17865912	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	start_codon	17864164	17864166	.	+	0	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	CDS	17864164	17864169	0.99	+	0	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	exon	17864164	17864169	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	intron	17864170	17864251	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	CDS	17864252	17864506	0.99	+	0	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	exon	17864252	17864506	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	intron	17864507	17864638	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	CDS	17864639	17864760	1	+	0	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	exon	17864639	17864760	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	intron	17864761	17864972	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	CDS	17864973	17865056	1	+	1	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	exon	17864973	17865056	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	intron	17865057	17865192	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	CDS	17865193	17865289	1	+	1	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	exon	17865193	17865289	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	intron	17865290	17865370	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	CDS	17865371	17865587	1	+	0	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	exon	17865371	17865587	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	intron	17865588	17865676	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	CDS	17865677	17865729	1	+	2	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	exon	17865677	17865729	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	intron	17865730	17865816	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	CDS	17865817	17865912	1	+	0	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	exon	17865817	17865912	.	+	.	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
Ledus.S2	AUGUSTUS	stop_codon	17865913	17865915	.	+	0	transcript_id "Ledus.S2G227700.t1"; gene_id "Ledus.S2G227700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6070.t1 is derived from g3513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28813362	28814084	.	+	.	Ledus.S1G349100
Ledus.S1	AUGUSTUS	transcript	28813362	28814084	.	+	.	transcript_id "Ledus.S1G349100.t1"; gene_id "Ledus.S1G349100"
Ledus.S1	AUGUSTUS	start_codon	28813362	28813364	.	+	0	transcript_id "Ledus.S1G349100.t1"; gene_id "Ledus.S1G349100"
Ledus.S1	AUGUSTUS	CDS	28813362	28813586	0.82	+	0	transcript_id "Ledus.S1G349100.t1"; gene_id "Ledus.S1G349100"
Ledus.S1	AUGUSTUS	exon	28813362	28813586	.	+	.	transcript_id "Ledus.S1G349100.t1"; gene_id "Ledus.S1G349100"
Ledus.S1	AUGUSTUS	intron	28813587	28813656	.	+	.	transcript_id "Ledus.S1G349100.t1"; gene_id "Ledus.S1G349100"
Ledus.S1	AUGUSTUS	CDS	28813657	28813700	0.93	+	0	transcript_id "Ledus.S1G349100.t1"; gene_id "Ledus.S1G349100"
Ledus.S1	AUGUSTUS	exon	28813657	28813700	.	+	.	transcript_id "Ledus.S1G349100.t1"; gene_id "Ledus.S1G349100"
Ledus.S1	AUGUSTUS	intron	28813701	28813993	.	+	.	transcript_id "Ledus.S1G349100.t1"; gene_id "Ledus.S1G349100"
Ledus.S1	AUGUSTUS	CDS	28813994	28814084	0.48	+	1	transcript_id "Ledus.S1G349100.t1"; gene_id "Ledus.S1G349100"
Ledus.S1	AUGUSTUS	exon	28813994	28814084	.	+	.	transcript_id "Ledus.S1G349100.t1"; gene_id "Ledus.S1G349100"
Ledus.S1	AUGUSTUS	stop_codon	28814085	28814087	.	+	0	transcript_id "Ledus.S1G349100.t1"; gene_id "Ledus.S1G349100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2435.t1 is derived from g9298.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18104513	18106753	.	+	.	Ledus.S2G231700
Ledus.S2	AUGUSTUS	transcript	18104513	18106753	.	+	.	transcript_id "Ledus.S2G231700.t1"; gene_id "Ledus.S2G231700"
Ledus.S2	AUGUSTUS	start_codon	18104513	18104515	.	+	0	transcript_id "Ledus.S2G231700.t1"; gene_id "Ledus.S2G231700"
Ledus.S2	AUGUSTUS	CDS	18104513	18106753	0.99	+	0	transcript_id "Ledus.S2G231700.t1"; gene_id "Ledus.S2G231700"
Ledus.S2	AUGUSTUS	exon	18104513	18106753	.	+	.	transcript_id "Ledus.S2G231700.t1"; gene_id "Ledus.S2G231700"
Ledus.S2	AUGUSTUS	stop_codon	18106754	18106756	.	+	0	transcript_id "Ledus.S2G231700.t1"; gene_id "Ledus.S2G231700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10680.t1 is derived from g11710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17056295	17058169	.	+	.	Ledus.S3G215700
Ledus.S3	AUGUSTUS	transcript	17056295	17058169	.	+	.	transcript_id "Ledus.S3G215700.t1"; gene_id "Ledus.S3G215700"
Ledus.S3	AUGUSTUS	start_codon	17056295	17056297	.	+	0	transcript_id "Ledus.S3G215700.t1"; gene_id "Ledus.S3G215700"
Ledus.S3	AUGUSTUS	CDS	17056295	17058169	0.8	+	0	transcript_id "Ledus.S3G215700.t1"; gene_id "Ledus.S3G215700"
Ledus.S3	AUGUSTUS	exon	17056295	17058169	.	+	.	transcript_id "Ledus.S3G215700.t1"; gene_id "Ledus.S3G215700"
Ledus.S3	AUGUSTUS	stop_codon	17058170	17058172	.	+	0	transcript_id "Ledus.S3G215700.t1"; gene_id "Ledus.S3G215700"
Ledus.S3	AUGUSTUS	transcript	17056790	17058169	.	+	.	transcript_id "Ledus.S3G215700.t2"; gene_id "Ledus.S3G215700"
Ledus.S3	AUGUSTUS	start_codon	17056790	17056792	.	+	0	transcript_id "Ledus.S3G215700.t2"; gene_id "Ledus.S3G215700"
Ledus.S3	AUGUSTUS	CDS	17056790	17058169	0.69	+	0	transcript_id "Ledus.S3G215700.t2"; gene_id "Ledus.S3G215700"
Ledus.S3	AUGUSTUS	exon	17056790	17058169	.	+	.	transcript_id "Ledus.S3G215700.t2"; gene_id "Ledus.S3G215700"
Ledus.S3	AUGUSTUS	stop_codon	17058170	17058172	.	+	0	transcript_id "Ledus.S3G215700.t2"; gene_id "Ledus.S3G215700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12189.t1 is derived from g5808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10224802	10229254	.	-	.	Ledus.S4G134500
Ledus.S4	AUGUSTUS	transcript	10224802	10229254	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	stop_codon	10224799	10224801	.	-	0	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10224802	10225030	1	-	1	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10224802	10225030	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10225031	10225119	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10225120	10225215	1	-	1	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10225120	10225215	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10225216	10225304	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10225305	10225489	1	-	0	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10225305	10225489	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10225490	10225602	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10225603	10225816	1	-	1	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10225603	10225816	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10225817	10226005	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10226006	10226139	1	-	0	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10226006	10226139	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10226140	10226257	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10226258	10226386	1	-	0	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10226258	10226386	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10226387	10226531	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10226532	10226712	1	-	1	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10226532	10226712	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10226713	10226837	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10226838	10226926	1	-	0	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10226838	10226926	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10226927	10227019	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10227020	10227087	1	-	2	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10227020	10227087	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10227088	10227270	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10227271	10227334	1	-	0	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10227271	10227334	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10227335	10227499	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10227500	10227640	0.75	-	0	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10227500	10227640	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10227641	10227747	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10227748	10228042	0.59	-	1	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10227748	10228042	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10228043	10228186	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10228187	10228553	0.45	-	2	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10228187	10228553	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10228554	10228865	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10228866	10229108	0.36	-	2	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10228866	10229108	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	intron	10229109	10229199	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	CDS	10229200	10229254	0.69	-	0	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	exon	10229200	10229254	.	-	.	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
Ledus.S4	AUGUSTUS	start_codon	10229252	10229254	.	-	0	transcript_id "Ledus.S4G134500.t1"; gene_id "Ledus.S4G134500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12603.t1 is derived from g6225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13117999	13119230	.	+	.	Ledus.S4G175900
Ledus.S4	AUGUSTUS	transcript	13117999	13119230	.	+	.	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	start_codon	13117999	13118001	.	+	0	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	CDS	13117999	13118131	0.71	+	0	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	exon	13117999	13118131	.	+	.	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	intron	13118132	13118362	.	+	.	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	CDS	13118363	13118474	0.92	+	2	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	exon	13118363	13118474	.	+	.	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	intron	13118475	13118561	.	+	.	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	CDS	13118562	13118673	0.99	+	1	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	exon	13118562	13118673	.	+	.	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	intron	13118674	13118777	.	+	.	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	CDS	13118778	13118930	0.94	+	0	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	exon	13118778	13118930	.	+	.	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	intron	13118931	13119018	.	+	.	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	CDS	13119019	13119069	1	+	0	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	exon	13119019	13119069	.	+	.	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	intron	13119070	13119149	.	+	.	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	CDS	13119150	13119230	1	+	0	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	exon	13119150	13119230	.	+	.	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
Ledus.S4	AUGUSTUS	stop_codon	13119231	13119233	.	+	0	transcript_id "Ledus.S4G175900.t1"; gene_id "Ledus.S4G175900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6779.t1 is derived from g4223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34089470	34090345	.	+	.	Ledus.S1G420000
Ledus.S1	AUGUSTUS	transcript	34089470	34090345	.	+	.	transcript_id "Ledus.S1G420000.t1"; gene_id "Ledus.S1G420000"
Ledus.S1	AUGUSTUS	start_codon	34089470	34089472	.	+	0	transcript_id "Ledus.S1G420000.t1"; gene_id "Ledus.S1G420000"
Ledus.S1	AUGUSTUS	CDS	34089470	34089942	0.85	+	0	transcript_id "Ledus.S1G420000.t1"; gene_id "Ledus.S1G420000"
Ledus.S1	AUGUSTUS	exon	34089470	34089942	.	+	.	transcript_id "Ledus.S1G420000.t1"; gene_id "Ledus.S1G420000"
Ledus.S1	AUGUSTUS	intron	34089943	34090056	.	+	.	transcript_id "Ledus.S1G420000.t1"; gene_id "Ledus.S1G420000"
Ledus.S1	AUGUSTUS	CDS	34090057	34090345	0.63	+	1	transcript_id "Ledus.S1G420000.t1"; gene_id "Ledus.S1G420000"
Ledus.S1	AUGUSTUS	exon	34090057	34090345	.	+	.	transcript_id "Ledus.S1G420000.t1"; gene_id "Ledus.S1G420000"
Ledus.S1	AUGUSTUS	stop_codon	34090346	34090348	.	+	0	transcript_id "Ledus.S1G420000.t1"; gene_id "Ledus.S1G420000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10236.t1 is derived from g11266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13722383	13724656	.	-	.	Ledus.S3G171300
Ledus.S3	AUGUSTUS	transcript	13722383	13724656	.	-	.	transcript_id "Ledus.S3G171300.t1"; gene_id "Ledus.S3G171300"
Ledus.S3	AUGUSTUS	stop_codon	13722380	13722382	.	-	0	transcript_id "Ledus.S3G171300.t1"; gene_id "Ledus.S3G171300"
Ledus.S3	AUGUSTUS	CDS	13722383	13722445	0.98	-	0	transcript_id "Ledus.S3G171300.t1"; gene_id "Ledus.S3G171300"
Ledus.S3	AUGUSTUS	exon	13722383	13722445	.	-	.	transcript_id "Ledus.S3G171300.t1"; gene_id "Ledus.S3G171300"
Ledus.S3	AUGUSTUS	intron	13722446	13722616	.	-	.	transcript_id "Ledus.S3G171300.t1"; gene_id "Ledus.S3G171300"
Ledus.S3	AUGUSTUS	CDS	13722617	13722695	0.93	-	1	transcript_id "Ledus.S3G171300.t1"; gene_id "Ledus.S3G171300"
Ledus.S3	AUGUSTUS	exon	13722617	13722695	.	-	.	transcript_id "Ledus.S3G171300.t1"; gene_id "Ledus.S3G171300"
Ledus.S3	AUGUSTUS	intron	13722696	13722830	.	-	.	transcript_id "Ledus.S3G171300.t1"; gene_id "Ledus.S3G171300"
Ledus.S3	AUGUSTUS	CDS	13722831	13724656	0.89	-	0	transcript_id "Ledus.S3G171300.t1"; gene_id "Ledus.S3G171300"
Ledus.S3	AUGUSTUS	exon	13722831	13724656	.	-	.	transcript_id "Ledus.S3G171300.t1"; gene_id "Ledus.S3G171300"
Ledus.S3	AUGUSTUS	start_codon	13724654	13724656	.	-	0	transcript_id "Ledus.S3G171300.t1"; gene_id "Ledus.S3G171300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8914.t1 is derived from g9944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3085166	3087670	.	+	.	Ledus.S3G039100
Ledus.S3	AUGUSTUS	transcript	3085166	3087670	.	+	.	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	start_codon	3085166	3085168	.	+	0	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	CDS	3085166	3085699	0.29	+	0	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	exon	3085166	3085699	.	+	.	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	intron	3085700	3085798	.	+	.	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	CDS	3085799	3085876	1	+	0	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	exon	3085799	3085876	.	+	.	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	intron	3085877	3085994	.	+	.	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	CDS	3085995	3086525	0.94	+	0	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	exon	3085995	3086525	.	+	.	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	intron	3086526	3086629	.	+	.	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	CDS	3086630	3087670	1	+	0	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	exon	3086630	3087670	.	+	.	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
Ledus.S3	AUGUSTUS	stop_codon	3087671	3087673	.	+	0	transcript_id "Ledus.S3G039100.t1"; gene_id "Ledus.S3G039100"
# This transcript jg10539.t2 is derived from g11569.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10540.t1 is derived from g11570.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16022293	16024652	.	-	.	Ledus.S3G201700
Ledus.S3	AUGUSTUS	transcript	16022440	16024652	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	stop_codon	16022437	16022439	.	-	0	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16022440	16022504	0.98	-	2	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16022440	16022504	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	intron	16022505	16022583	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16022584	16022617	0.98	-	0	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16022584	16022617	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	intron	16022618	16022749	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16022750	16023688	1	-	0	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16022750	16023688	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	intron	16023689	16023784	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16023785	16023964	1	-	0	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16023785	16023964	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	intron	16023965	16024056	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16024057	16024227	1	-	0	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16024057	16024227	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	intron	16024228	16024391	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16024392	16024539	1	-	1	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16024392	16024539	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	intron	16024540	16024608	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16024609	16024652	0.42	-	0	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16024609	16024652	.	-	.	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	start_codon	16024650	16024652	.	-	0	transcript_id "Ledus.S3G201700.t1"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	transcript	16022293	16024652	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	stop_codon	16022290	16022292	.	-	0	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16022293	16022345	0.94	-	2	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16022293	16022345	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	intron	16022346	16022583	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16022584	16022617	0.94	-	0	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16022584	16022617	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	intron	16022618	16022749	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16022750	16023688	0.98	-	0	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16022750	16023688	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	intron	16023689	16023784	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16023785	16023964	1	-	0	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16023785	16023964	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	intron	16023965	16024056	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16024057	16024227	1	-	0	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16024057	16024227	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	intron	16024228	16024391	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16024392	16024539	1	-	1	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16024392	16024539	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	intron	16024540	16024608	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	CDS	16024609	16024652	0.44	-	0	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	exon	16024609	16024652	.	-	.	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
Ledus.S3	AUGUSTUS	start_codon	16024650	16024652	.	-	0	transcript_id "Ledus.S3G201700.t2"; gene_id "Ledus.S3G201700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1816.t1 is derived from g8679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12728543	12728740	.	-	.	Ledus.S2G169800
Ledus.S2	AUGUSTUS	transcript	12728543	12728740	.	-	.	transcript_id "Ledus.S2G169800.t1"; gene_id "Ledus.S2G169800"
Ledus.S2	AUGUSTUS	stop_codon	12728540	12728542	.	-	0	transcript_id "Ledus.S2G169800.t1"; gene_id "Ledus.S2G169800"
Ledus.S2	AUGUSTUS	CDS	12728543	12728740	0.95	-	0	transcript_id "Ledus.S2G169800.t1"; gene_id "Ledus.S2G169800"
Ledus.S2	AUGUSTUS	exon	12728543	12728740	.	-	.	transcript_id "Ledus.S2G169800.t1"; gene_id "Ledus.S2G169800"
Ledus.S2	AUGUSTUS	start_codon	12728738	12728740	.	-	0	transcript_id "Ledus.S2G169800.t1"; gene_id "Ledus.S2G169800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11780.t1 is derived from g5399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6745176	6745720	.	+	.	Ledus.S4G093600
Ledus.S4	AUGUSTUS	transcript	6745176	6745720	.	+	.	transcript_id "Ledus.S4G093600.t1"; gene_id "Ledus.S4G093600"
Ledus.S4	AUGUSTUS	start_codon	6745176	6745178	.	+	0	transcript_id "Ledus.S4G093600.t1"; gene_id "Ledus.S4G093600"
Ledus.S4	AUGUSTUS	CDS	6745176	6745381	0.28	+	0	transcript_id "Ledus.S4G093600.t1"; gene_id "Ledus.S4G093600"
Ledus.S4	AUGUSTUS	exon	6745176	6745381	.	+	.	transcript_id "Ledus.S4G093600.t1"; gene_id "Ledus.S4G093600"
Ledus.S4	AUGUSTUS	intron	6745382	6745497	.	+	.	transcript_id "Ledus.S4G093600.t1"; gene_id "Ledus.S4G093600"
Ledus.S4	AUGUSTUS	CDS	6745498	6745577	0.98	+	1	transcript_id "Ledus.S4G093600.t1"; gene_id "Ledus.S4G093600"
Ledus.S4	AUGUSTUS	exon	6745498	6745577	.	+	.	transcript_id "Ledus.S4G093600.t1"; gene_id "Ledus.S4G093600"
Ledus.S4	AUGUSTUS	intron	6745578	6745664	.	+	.	transcript_id "Ledus.S4G093600.t1"; gene_id "Ledus.S4G093600"
Ledus.S4	AUGUSTUS	CDS	6745665	6745720	0.98	+	2	transcript_id "Ledus.S4G093600.t1"; gene_id "Ledus.S4G093600"
Ledus.S4	AUGUSTUS	exon	6745665	6745720	.	+	.	transcript_id "Ledus.S4G093600.t1"; gene_id "Ledus.S4G093600"
Ledus.S4	AUGUSTUS	stop_codon	6745721	6745723	.	+	0	transcript_id "Ledus.S4G093600.t1"; gene_id "Ledus.S4G093600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3934.t1 is derived from g1370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13635616	13636179	.	+	.	Ledus.S1G135500
Ledus.S1	AUGUSTUS	transcript	13635616	13636179	.	+	.	transcript_id "Ledus.S1G135500.t1"; gene_id "Ledus.S1G135500"
Ledus.S1	AUGUSTUS	start_codon	13635616	13635618	.	+	0	transcript_id "Ledus.S1G135500.t1"; gene_id "Ledus.S1G135500"
Ledus.S1	AUGUSTUS	CDS	13635616	13636179	0.31	+	0	transcript_id "Ledus.S1G135500.t1"; gene_id "Ledus.S1G135500"
Ledus.S1	AUGUSTUS	exon	13635616	13636179	.	+	.	transcript_id "Ledus.S1G135500.t1"; gene_id "Ledus.S1G135500"
Ledus.S1	AUGUSTUS	stop_codon	13636180	13636182	.	+	0	transcript_id "Ledus.S1G135500.t1"; gene_id "Ledus.S1G135500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4487.t1 is derived from g1923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17312409	17312963	.	+	.	Ledus.S1G190800
Ledus.S1	AUGUSTUS	transcript	17312409	17312963	.	+	.	transcript_id "Ledus.S1G190800.t1"; gene_id "Ledus.S1G190800"
Ledus.S1	AUGUSTUS	start_codon	17312409	17312411	.	+	0	transcript_id "Ledus.S1G190800.t1"; gene_id "Ledus.S1G190800"
Ledus.S1	AUGUSTUS	CDS	17312409	17312963	0.97	+	0	transcript_id "Ledus.S1G190800.t1"; gene_id "Ledus.S1G190800"
Ledus.S1	AUGUSTUS	exon	17312409	17312963	.	+	.	transcript_id "Ledus.S1G190800.t1"; gene_id "Ledus.S1G190800"
Ledus.S1	AUGUSTUS	stop_codon	17312964	17312966	.	+	0	transcript_id "Ledus.S1G190800.t1"; gene_id "Ledus.S1G190800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12160.t1 is derived from g5779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10048746	10050527	.	+	.	Ledus.S4G131600
Ledus.S4	AUGUSTUS	transcript	10048746	10050527	.	+	.	transcript_id "Ledus.S4G131600.t1"; gene_id "Ledus.S4G131600"
Ledus.S4	AUGUSTUS	start_codon	10048746	10048748	.	+	0	transcript_id "Ledus.S4G131600.t1"; gene_id "Ledus.S4G131600"
Ledus.S4	AUGUSTUS	CDS	10048746	10050527	0.87	+	0	transcript_id "Ledus.S4G131600.t1"; gene_id "Ledus.S4G131600"
Ledus.S4	AUGUSTUS	exon	10048746	10050527	.	+	.	transcript_id "Ledus.S4G131600.t1"; gene_id "Ledus.S4G131600"
Ledus.S4	AUGUSTUS	stop_codon	10050528	10050530	.	+	0	transcript_id "Ledus.S4G131600.t1"; gene_id "Ledus.S4G131600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8144.t1 is derived from g12815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9359747	9364299	.	+	.	Ledus.S5G092200
Ledus.S5	AUGUSTUS	transcript	9359747	9364299	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	start_codon	9359747	9359749	.	+	0	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9359747	9359828	0.94	+	0	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9359747	9359828	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9359829	9359927	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9359928	9360054	1	+	2	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9359928	9360054	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9360055	9360146	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9360147	9360290	1	+	1	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9360147	9360290	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9360291	9360388	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9360389	9360460	1	+	1	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9360389	9360460	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9360461	9360555	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9360556	9360627	1	+	1	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9360556	9360627	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9360628	9360725	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9360726	9360800	1	+	1	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9360726	9360800	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9360801	9360973	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9360974	9361045	1	+	1	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9360974	9361045	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9361046	9361209	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9361210	9361281	0.99	+	1	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9361210	9361281	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9361282	9361398	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9361399	9361464	0.77	+	1	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9361399	9361464	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9361465	9361572	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9361573	9361638	0.99	+	1	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9361573	9361638	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9361639	9361727	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9361728	9361787	1	+	1	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9361728	9361787	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9361788	9361901	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9361902	9362002	1	+	1	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9361902	9362002	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9362003	9362102	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9362103	9362303	1	+	2	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9362103	9362303	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9362304	9362392	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9362393	9362715	1	+	2	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9362393	9362715	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9362716	9362805	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9362806	9362857	1	+	0	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9362806	9362857	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9362858	9362968	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9362969	9363060	1	+	2	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9362969	9363060	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9363061	9363156	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9363157	9363302	1	+	0	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9363157	9363302	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9363303	9363388	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9363389	9363536	1	+	1	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9363389	9363536	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9363537	9363672	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9363673	9363822	1	+	0	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9363673	9363822	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9363823	9363918	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9363919	9363954	0.55	+	0	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9363919	9363954	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9363955	9364107	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9364108	9364113	1	+	0	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9364108	9364113	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	intron	9364114	9364251	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	CDS	9364252	9364299	1	+	0	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	exon	9364252	9364299	.	+	.	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
Ledus.S5	AUGUSTUS	stop_codon	9364300	9364302	.	+	0	transcript_id "Ledus.S5G092200.t1"; gene_id "Ledus.S5G092200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12475.t1 is derived from g6096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12200080	12203580	.	-	.	Ledus.S4G163100
Ledus.S4	AUGUSTUS	transcript	12200080	12203580	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	stop_codon	12200077	12200079	.	-	0	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	CDS	12200080	12200190	1	-	0	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	exon	12200080	12200190	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	intron	12200191	12200266	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	CDS	12200267	12200375	1	-	1	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	exon	12200267	12200375	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	intron	12200376	12200460	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	CDS	12200461	12200609	1	-	0	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	exon	12200461	12200609	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	intron	12200610	12200677	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	CDS	12200678	12200780	1	-	1	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	exon	12200678	12200780	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	intron	12200781	12200885	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	CDS	12200886	12201061	1	-	0	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	exon	12200886	12201061	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	intron	12201062	12201277	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	CDS	12201278	12201340	0.97	-	0	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	exon	12201278	12201340	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	intron	12201341	12201441	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	CDS	12201442	12201530	0.96	-	2	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	exon	12201442	12201530	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	intron	12201531	12201760	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	CDS	12201761	12201871	1	-	2	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	exon	12201761	12201871	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	intron	12201872	12201944	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	CDS	12201945	12202079	1	-	2	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	exon	12201945	12202079	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	intron	12202080	12202226	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	CDS	12202227	12202392	1	-	0	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	exon	12202227	12202392	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	intron	12202393	12202584	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	CDS	12202585	12202863	1	-	0	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	exon	12202585	12202863	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	intron	12202864	12203274	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	CDS	12203275	12203580	1	-	0	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	exon	12203275	12203580	.	-	.	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
Ledus.S4	AUGUSTUS	start_codon	12203578	12203580	.	-	0	transcript_id "Ledus.S4G163100.t1"; gene_id "Ledus.S4G163100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5400.t1 is derived from g2839.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23998886	24000982	.	+	.	Ledus.S1G282100
Ledus.S1	AUGUSTUS	transcript	23998886	24000982	.	+	.	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	start_codon	23998886	23998888	.	+	0	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	CDS	23998886	23999458	0.58	+	0	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	exon	23998886	23999458	.	+	.	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	intron	23999459	23999545	.	+	.	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	CDS	23999546	23999657	0.98	+	0	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	exon	23999546	23999657	.	+	.	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	intron	23999658	23999794	.	+	.	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	CDS	23999795	23999919	0.66	+	2	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	exon	23999795	23999919	.	+	.	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	intron	23999920	24000035	.	+	.	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	CDS	24000036	24000229	0.83	+	0	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	exon	24000036	24000229	.	+	.	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	intron	24000230	24000353	.	+	.	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	CDS	24000354	24000608	0.9	+	1	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	exon	24000354	24000608	.	+	.	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	intron	24000609	24000762	.	+	.	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	CDS	24000763	24000982	0.72	+	1	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	exon	24000763	24000982	.	+	.	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	stop_codon	24000983	24000985	.	+	0	transcript_id "Ledus.S1G282100.t1"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	transcript	23998886	24000982	.	+	.	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	start_codon	23998886	23998888	.	+	0	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	CDS	23998886	23999458	0.54	+	0	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	exon	23998886	23999458	.	+	.	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	intron	23999459	23999545	.	+	.	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	CDS	23999546	23999683	0.99	+	0	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	exon	23999546	23999683	.	+	.	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	intron	23999684	23999794	.	+	.	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	CDS	23999795	23999932	0.56	+	0	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	exon	23999795	23999932	.	+	.	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	intron	23999933	24000035	.	+	.	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	CDS	24000036	24000229	0.99	+	0	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	exon	24000036	24000229	.	+	.	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	intron	24000230	24000353	.	+	.	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	CDS	24000354	24000608	0.77	+	1	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	exon	24000354	24000608	.	+	.	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	intron	24000609	24000762	.	+	.	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	CDS	24000763	24000982	0.66	+	1	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	exon	24000763	24000982	.	+	.	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
Ledus.S1	AUGUSTUS	stop_codon	24000983	24000985	.	+	0	transcript_id "Ledus.S1G282100.t2"; gene_id "Ledus.S1G282100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg883.t1 is derived from g7744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5958422	5961100	.	+	.	Ledus.S2G076500
Ledus.S2	AUGUSTUS	transcript	5958422	5961100	.	+	.	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	start_codon	5958422	5958424	.	+	0	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	CDS	5958422	5959921	1	+	0	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	exon	5958422	5959921	.	+	.	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	intron	5959922	5960047	.	+	.	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	CDS	5960048	5960515	1	+	0	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	exon	5960048	5960515	.	+	.	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	intron	5960516	5960605	.	+	.	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	CDS	5960606	5960755	0.6	+	0	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	exon	5960606	5960755	.	+	.	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	intron	5960756	5960863	.	+	.	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	CDS	5960864	5960938	0.42	+	0	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	exon	5960864	5960938	.	+	.	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	intron	5960939	5961082	.	+	.	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	CDS	5961083	5961100	0.64	+	0	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	exon	5961083	5961100	.	+	.	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
Ledus.S2	AUGUSTUS	stop_codon	5961101	5961103	.	+	0	transcript_id "Ledus.S2G076500.t1"; gene_id "Ledus.S2G076500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12890.t1 is derived from g1.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C19	AUGUSTUS	gene	57255	57554	.	-	.	Ledus.C19G000100
Ledus.C19	AUGUSTUS	transcript	57255	57554	.	-	.	transcript_id "Ledus.C19G000100.t1"; gene_id "Ledus.C19G000100"
Ledus.C19	AUGUSTUS	stop_codon	57252	57254	.	-	0	transcript_id "Ledus.C19G000100.t1"; gene_id "Ledus.C19G000100"
Ledus.C19	AUGUSTUS	CDS	57255	57554	0.98	-	0	transcript_id "Ledus.C19G000100.t1"; gene_id "Ledus.C19G000100"
Ledus.C19	AUGUSTUS	exon	57255	57554	.	-	.	transcript_id "Ledus.C19G000100.t1"; gene_id "Ledus.C19G000100"
Ledus.C19	AUGUSTUS	start_codon	57552	57554	.	-	0	transcript_id "Ledus.C19G000100.t1"; gene_id "Ledus.C19G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11747.t1 is derived from g5366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6550517	6551146	.	+	.	Ledus.S4G090300
Ledus.S4	AUGUSTUS	transcript	6550517	6551146	.	+	.	transcript_id "Ledus.S4G090300.t1"; gene_id "Ledus.S4G090300"
Ledus.S4	AUGUSTUS	start_codon	6550517	6550519	.	+	0	transcript_id "Ledus.S4G090300.t1"; gene_id "Ledus.S4G090300"
Ledus.S4	AUGUSTUS	CDS	6550517	6551146	1	+	0	transcript_id "Ledus.S4G090300.t1"; gene_id "Ledus.S4G090300"
Ledus.S4	AUGUSTUS	exon	6550517	6551146	.	+	.	transcript_id "Ledus.S4G090300.t1"; gene_id "Ledus.S4G090300"
Ledus.S4	AUGUSTUS	stop_codon	6551147	6551149	.	+	0	transcript_id "Ledus.S4G090300.t1"; gene_id "Ledus.S4G090300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5475.t1 is derived from g2914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24476357	24476946	.	+	.	Ledus.S1G289600
Ledus.S1	AUGUSTUS	transcript	24476357	24476946	.	+	.	transcript_id "Ledus.S1G289600.t1"; gene_id "Ledus.S1G289600"
Ledus.S1	AUGUSTUS	start_codon	24476357	24476359	.	+	0	transcript_id "Ledus.S1G289600.t1"; gene_id "Ledus.S1G289600"
Ledus.S1	AUGUSTUS	CDS	24476357	24476486	1	+	0	transcript_id "Ledus.S1G289600.t1"; gene_id "Ledus.S1G289600"
Ledus.S1	AUGUSTUS	exon	24476357	24476486	.	+	.	transcript_id "Ledus.S1G289600.t1"; gene_id "Ledus.S1G289600"
Ledus.S1	AUGUSTUS	intron	24476487	24476566	.	+	.	transcript_id "Ledus.S1G289600.t1"; gene_id "Ledus.S1G289600"
Ledus.S1	AUGUSTUS	CDS	24476567	24476946	1	+	2	transcript_id "Ledus.S1G289600.t1"; gene_id "Ledus.S1G289600"
Ledus.S1	AUGUSTUS	exon	24476567	24476946	.	+	.	transcript_id "Ledus.S1G289600.t1"; gene_id "Ledus.S1G289600"
Ledus.S1	AUGUSTUS	stop_codon	24476947	24476949	.	+	0	transcript_id "Ledus.S1G289600.t1"; gene_id "Ledus.S1G289600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9223.t1 is derived from g10253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5474737	5481702	.	+	.	Ledus.S3G070000
Ledus.S3	AUGUSTUS	transcript	5474737	5481702	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	start_codon	5474737	5474739	.	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5474737	5475090	0.96	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5474737	5475090	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5475091	5475189	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5475190	5475330	1	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5475190	5475330	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5475331	5475456	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5475457	5475526	1	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5475457	5475526	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5475527	5475609	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5475610	5475674	1	+	2	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5475610	5475674	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5475675	5475745	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5475746	5475830	1	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5475746	5475830	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5475831	5476105	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5476106	5476141	0.81	+	2	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5476106	5476141	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5476142	5476258	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5476259	5476350	0.89	+	2	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5476259	5476350	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5476351	5476427	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5476428	5476493	1	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5476428	5476493	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5476494	5476579	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5476580	5476644	1	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5476580	5476644	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5476645	5476743	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5476744	5476864	0.6	+	1	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5476744	5476864	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5476865	5476970	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5476971	5477036	0.89	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5476971	5477036	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5477037	5477158	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5477159	5477274	0.97	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5477159	5477274	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5477275	5477383	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5477384	5477474	0.84	+	1	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5477384	5477474	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5477475	5477726	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5477727	5477810	0.99	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5477727	5477810	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5477811	5477911	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5477912	5478004	0.99	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5477912	5478004	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5478005	5478117	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5478118	5478213	0.97	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5478118	5478213	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5478214	5478295	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5478296	5478381	1	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5478296	5478381	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5478382	5478475	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5478476	5478554	1	+	1	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5478476	5478554	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5478555	5478708	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5478709	5478822	0.98	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5478709	5478822	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5478823	5478948	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5478949	5479044	0.99	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5478949	5479044	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5479045	5479134	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5479135	5479213	0.62	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5479135	5479213	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5479214	5479306	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5479307	5479575	0.98	+	2	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5479307	5479575	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5479576	5479722	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5479723	5479778	1	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5479723	5479778	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5479779	5479858	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5479859	5479970	1	+	1	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5479859	5479970	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5479971	5480066	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5480067	5480147	1	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5480067	5480147	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5480148	5480228	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5480229	5480308	1	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5480229	5480308	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5480309	5480396	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5480397	5480451	1	+	1	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5480397	5480451	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5480452	5480642	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5480643	5480742	0.97	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5480643	5480742	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5480743	5480861	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5480862	5481042	0.51	+	2	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5480862	5481042	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5481043	5481135	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5481136	5481259	1	+	1	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5481136	5481259	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5481260	5481341	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5481342	5481416	1	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5481342	5481416	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	intron	5481417	5481534	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	CDS	5481535	5481702	1	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	exon	5481535	5481702	.	+	.	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
Ledus.S3	AUGUSTUS	stop_codon	5481703	5481705	.	+	0	transcript_id "Ledus.S3G070000.t1"; gene_id "Ledus.S3G070000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3760.t1 is derived from g1196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11693376	11694442	.	+	.	Ledus.S1G118100
Ledus.S1	AUGUSTUS	transcript	11693376	11694442	.	+	.	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	start_codon	11693376	11693378	.	+	0	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	CDS	11693376	11693518	0.58	+	0	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	exon	11693376	11693518	.	+	.	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	intron	11693519	11693610	.	+	.	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	CDS	11693611	11693813	0.41	+	1	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	exon	11693611	11693813	.	+	.	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	intron	11693814	11693911	.	+	.	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	CDS	11693912	11693932	0.5	+	2	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	exon	11693912	11693932	.	+	.	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	intron	11693933	11694120	.	+	.	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	CDS	11694121	11694187	0.56	+	2	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	exon	11694121	11694187	.	+	.	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	intron	11694188	11694279	.	+	.	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	CDS	11694280	11694442	1	+	1	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	exon	11694280	11694442	.	+	.	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
Ledus.S1	AUGUSTUS	stop_codon	11694443	11694445	.	+	0	transcript_id "Ledus.S1G118100.t1"; gene_id "Ledus.S1G118100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4500.t1 is derived from g1936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17390525	17391745	.	+	.	Ledus.S1G192100
Ledus.S1	AUGUSTUS	transcript	17390525	17391745	.	+	.	transcript_id "Ledus.S1G192100.t1"; gene_id "Ledus.S1G192100"
Ledus.S1	AUGUSTUS	start_codon	17390525	17390527	.	+	0	transcript_id "Ledus.S1G192100.t1"; gene_id "Ledus.S1G192100"
Ledus.S1	AUGUSTUS	CDS	17390525	17391745	1	+	0	transcript_id "Ledus.S1G192100.t1"; gene_id "Ledus.S1G192100"
Ledus.S1	AUGUSTUS	exon	17390525	17391745	.	+	.	transcript_id "Ledus.S1G192100.t1"; gene_id "Ledus.S1G192100"
Ledus.S1	AUGUSTUS	stop_codon	17391746	17391748	.	+	0	transcript_id "Ledus.S1G192100.t1"; gene_id "Ledus.S1G192100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11398.t1 is derived from g5016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4004306	4005858	.	-	.	Ledus.S4G055400
Ledus.S4	AUGUSTUS	transcript	4004306	4005858	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	stop_codon	4004303	4004305	.	-	0	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	CDS	4004306	4004425	0.29	-	0	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	exon	4004306	4004425	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	intron	4004426	4004566	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	CDS	4004567	4004622	0.55	-	2	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	exon	4004567	4004622	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	intron	4004623	4004821	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	CDS	4004822	4004943	0.72	-	1	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	exon	4004822	4004943	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	intron	4004944	4005023	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	CDS	4005024	4005055	0.91	-	0	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	exon	4005024	4005055	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	intron	4005056	4005245	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	CDS	4005246	4005253	0.61	-	2	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	exon	4005246	4005253	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	intron	4005254	4005406	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	CDS	4005407	4005561	0.59	-	1	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	exon	4005407	4005561	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	intron	4005562	4005688	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	CDS	4005689	4005858	0.4	-	0	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	exon	4005689	4005858	.	-	.	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
Ledus.S4	AUGUSTUS	start_codon	4005856	4005858	.	-	0	transcript_id "Ledus.S4G055400.t1"; gene_id "Ledus.S4G055400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12307.t1 is derived from g5928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11147560	11150928	.	+	.	Ledus.S4G146300
Ledus.S4	AUGUSTUS	transcript	11147560	11150928	.	+	.	transcript_id "Ledus.S4G146300.t1"; gene_id "Ledus.S4G146300"
Ledus.S4	AUGUSTUS	start_codon	11147560	11147562	.	+	0	transcript_id "Ledus.S4G146300.t1"; gene_id "Ledus.S4G146300"
Ledus.S4	AUGUSTUS	CDS	11147560	11150928	0.96	+	0	transcript_id "Ledus.S4G146300.t1"; gene_id "Ledus.S4G146300"
Ledus.S4	AUGUSTUS	exon	11147560	11150928	.	+	.	transcript_id "Ledus.S4G146300.t1"; gene_id "Ledus.S4G146300"
Ledus.S4	AUGUSTUS	stop_codon	11150929	11150931	.	+	0	transcript_id "Ledus.S4G146300.t1"; gene_id "Ledus.S4G146300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4803.t1 is derived from g2241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19859572	19861844	.	-	.	Ledus.S1G222400
Ledus.S1	AUGUSTUS	transcript	19859572	19861844	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	stop_codon	19859569	19859571	.	-	0	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	CDS	19859572	19859760	0.98	-	0	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	exon	19859572	19859760	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	intron	19859761	19859877	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	CDS	19859878	19860009	0.98	-	0	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	exon	19859878	19860009	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	intron	19860010	19860109	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	CDS	19860110	19860177	1	-	2	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	exon	19860110	19860177	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	intron	19860178	19860269	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	CDS	19860270	19860302	1	-	2	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	exon	19860270	19860302	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	intron	19860303	19860449	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	CDS	19860450	19860543	1	-	0	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	exon	19860450	19860543	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	intron	19860544	19860647	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	CDS	19860648	19860698	0.85	-	0	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	exon	19860648	19860698	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	intron	19860699	19860802	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	CDS	19860803	19860874	1	-	0	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	exon	19860803	19860874	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	intron	19860875	19860953	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	CDS	19860954	19861022	1	-	0	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	exon	19860954	19861022	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	intron	19861023	19861102	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	CDS	19861103	19861213	1	-	0	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	exon	19861103	19861213	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	intron	19861214	19861308	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	CDS	19861309	19861405	1	-	1	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	exon	19861309	19861405	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	intron	19861406	19861785	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	CDS	19861786	19861844	0.98	-	0	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	exon	19861786	19861844	.	-	.	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
Ledus.S1	AUGUSTUS	start_codon	19861842	19861844	.	-	0	transcript_id "Ledus.S1G222400.t1"; gene_id "Ledus.S1G222400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8498.t1 is derived from g13170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12236306	12236785	.	+	.	Ledus.S5G127600
Ledus.S5	AUGUSTUS	transcript	12236306	12236785	.	+	.	transcript_id "Ledus.S5G127600.t1"; gene_id "Ledus.S5G127600"
Ledus.S5	AUGUSTUS	start_codon	12236306	12236308	.	+	0	transcript_id "Ledus.S5G127600.t1"; gene_id "Ledus.S5G127600"
Ledus.S5	AUGUSTUS	CDS	12236306	12236785	0.35	+	0	transcript_id "Ledus.S5G127600.t1"; gene_id "Ledus.S5G127600"
Ledus.S5	AUGUSTUS	exon	12236306	12236785	.	+	.	transcript_id "Ledus.S5G127600.t1"; gene_id "Ledus.S5G127600"
Ledus.S5	AUGUSTUS	stop_codon	12236786	12236788	.	+	0	transcript_id "Ledus.S5G127600.t1"; gene_id "Ledus.S5G127600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10181.t1 is derived from g11211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13473119	13474553	.	-	.	Ledus.S3G165800
Ledus.S3	AUGUSTUS	transcript	13473119	13474553	.	-	.	transcript_id "Ledus.S3G165800.t1"; gene_id "Ledus.S3G165800"
Ledus.S3	AUGUSTUS	stop_codon	13473116	13473118	.	-	0	transcript_id "Ledus.S3G165800.t1"; gene_id "Ledus.S3G165800"
Ledus.S3	AUGUSTUS	CDS	13473119	13474140	1	-	2	transcript_id "Ledus.S3G165800.t1"; gene_id "Ledus.S3G165800"
Ledus.S3	AUGUSTUS	exon	13473119	13474140	.	-	.	transcript_id "Ledus.S3G165800.t1"; gene_id "Ledus.S3G165800"
Ledus.S3	AUGUSTUS	intron	13474141	13474225	.	-	.	transcript_id "Ledus.S3G165800.t1"; gene_id "Ledus.S3G165800"
Ledus.S3	AUGUSTUS	CDS	13474226	13474553	0.99	-	0	transcript_id "Ledus.S3G165800.t1"; gene_id "Ledus.S3G165800"
Ledus.S3	AUGUSTUS	exon	13474226	13474553	.	-	.	transcript_id "Ledus.S3G165800.t1"; gene_id "Ledus.S3G165800"
Ledus.S3	AUGUSTUS	start_codon	13474551	13474553	.	-	0	transcript_id "Ledus.S3G165800.t1"; gene_id "Ledus.S3G165800"
# This transcript jg5106.t2 is derived from g2545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5107.t1 is derived from g2546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21755967	21757929	.	+	.	Ledus.S1G252800
Ledus.S1	AUGUSTUS	transcript	21755967	21757929	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	start_codon	21755967	21755969	.	+	0	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	CDS	21755967	21756064	0.64	+	0	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	exon	21755967	21756064	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	intron	21756065	21756381	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	CDS	21756382	21756461	0.65	+	1	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	exon	21756382	21756461	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	intron	21756462	21756656	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	CDS	21756657	21756673	0.75	+	2	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	exon	21756657	21756673	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	intron	21756674	21756837	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	CDS	21756838	21756903	0.78	+	0	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	exon	21756838	21756903	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	intron	21756904	21757063	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	CDS	21757064	21757213	0.71	+	0	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	exon	21757064	21757213	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	intron	21757214	21757429	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	CDS	21757430	21757461	0.92	+	0	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	exon	21757430	21757461	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	intron	21757462	21757534	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	CDS	21757535	21757542	0.93	+	1	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	exon	21757535	21757542	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	intron	21757543	21757780	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	CDS	21757781	21757929	0.93	+	2	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	exon	21757781	21757929	.	+	.	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
Ledus.S1	AUGUSTUS	stop_codon	21757930	21757932	.	+	0	transcript_id "Ledus.S1G252800.t1"; gene_id "Ledus.S1G252800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4202.t1 is derived from g1638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15353417	15353853	.	-	.	Ledus.S1G162300
Ledus.S1	AUGUSTUS	transcript	15353417	15353853	.	-	.	transcript_id "Ledus.S1G162300.t1"; gene_id "Ledus.S1G162300"
Ledus.S1	AUGUSTUS	stop_codon	15353414	15353416	.	-	0	transcript_id "Ledus.S1G162300.t1"; gene_id "Ledus.S1G162300"
Ledus.S1	AUGUSTUS	CDS	15353417	15353454	0.51	-	2	transcript_id "Ledus.S1G162300.t1"; gene_id "Ledus.S1G162300"
Ledus.S1	AUGUSTUS	exon	15353417	15353454	.	-	.	transcript_id "Ledus.S1G162300.t1"; gene_id "Ledus.S1G162300"
Ledus.S1	AUGUSTUS	intron	15353455	15353663	.	-	.	transcript_id "Ledus.S1G162300.t1"; gene_id "Ledus.S1G162300"
Ledus.S1	AUGUSTUS	CDS	15353664	15353853	0.22	-	0	transcript_id "Ledus.S1G162300.t1"; gene_id "Ledus.S1G162300"
Ledus.S1	AUGUSTUS	exon	15353664	15353853	.	-	.	transcript_id "Ledus.S1G162300.t1"; gene_id "Ledus.S1G162300"
Ledus.S1	AUGUSTUS	start_codon	15353851	15353853	.	-	0	transcript_id "Ledus.S1G162300.t1"; gene_id "Ledus.S1G162300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12823.t1 is derived from g6445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15068584	15070884	.	+	.	Ledus.S4G197900
Ledus.S4	AUGUSTUS	transcript	15068584	15070884	.	+	.	transcript_id "Ledus.S4G197900.t1"; gene_id "Ledus.S4G197900"
Ledus.S4	AUGUSTUS	start_codon	15068584	15068586	.	+	0	transcript_id "Ledus.S4G197900.t1"; gene_id "Ledus.S4G197900"
Ledus.S4	AUGUSTUS	CDS	15068584	15070884	0.54	+	0	transcript_id "Ledus.S4G197900.t1"; gene_id "Ledus.S4G197900"
Ledus.S4	AUGUSTUS	exon	15068584	15070884	.	+	.	transcript_id "Ledus.S4G197900.t1"; gene_id "Ledus.S4G197900"
Ledus.S4	AUGUSTUS	stop_codon	15070885	15070887	.	+	0	transcript_id "Ledus.S4G197900.t1"; gene_id "Ledus.S4G197900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12123.t1 is derived from g5742.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9646961	9647230	.	-	.	Ledus.S4G127900
Ledus.S4	AUGUSTUS	transcript	9646961	9647230	.	-	.	transcript_id "Ledus.S4G127900.t1"; gene_id "Ledus.S4G127900"
Ledus.S4	AUGUSTUS	stop_codon	9646958	9646960	.	-	0	transcript_id "Ledus.S4G127900.t1"; gene_id "Ledus.S4G127900"
Ledus.S4	AUGUSTUS	CDS	9646961	9647230	0.33	-	0	transcript_id "Ledus.S4G127900.t1"; gene_id "Ledus.S4G127900"
Ledus.S4	AUGUSTUS	exon	9646961	9647230	.	-	.	transcript_id "Ledus.S4G127900.t1"; gene_id "Ledus.S4G127900"
Ledus.S4	AUGUSTUS	start_codon	9647228	9647230	.	-	0	transcript_id "Ledus.S4G127900.t1"; gene_id "Ledus.S4G127900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12484.t1 is derived from g6105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12314555	12316455	.	+	.	Ledus.S4G164000
Ledus.S4	AUGUSTUS	transcript	12314555	12316455	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	start_codon	12314555	12314557	.	+	0	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	CDS	12314555	12315103	0.76	+	0	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	exon	12314555	12315103	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	intron	12315104	12315171	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	CDS	12315172	12315305	1	+	0	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	exon	12315172	12315305	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	intron	12315306	12315406	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	CDS	12315407	12315520	1	+	1	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	exon	12315407	12315520	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	intron	12315521	12315593	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	CDS	12315594	12315771	0.99	+	1	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	exon	12315594	12315771	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	intron	12315772	12315882	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	CDS	12315883	12315951	1	+	0	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	exon	12315883	12315951	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	intron	12315952	12316021	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	CDS	12316022	12316268	0.53	+	0	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	exon	12316022	12316268	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	intron	12316269	12316372	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	CDS	12316373	12316455	0.53	+	2	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	exon	12316373	12316455	.	+	.	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
Ledus.S4	AUGUSTUS	stop_codon	12316456	12316458	.	+	0	transcript_id "Ledus.S4G164000.t1"; gene_id "Ledus.S4G164000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7154.t1 is derived from g6685.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1819542	1821918	.	+	.	Ledus.C7G021500
Ledus.C7	AUGUSTUS	transcript	1819542	1821918	.	+	.	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	start_codon	1819542	1819544	.	+	0	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	CDS	1819542	1820789	0.76	+	0	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	exon	1819542	1820789	.	+	.	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	intron	1820790	1820873	.	+	.	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	CDS	1820874	1820990	0.82	+	0	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	exon	1820874	1820990	.	+	.	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	intron	1820991	1821089	.	+	.	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	CDS	1821090	1821190	0.46	+	0	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	exon	1821090	1821190	.	+	.	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	intron	1821191	1821277	.	+	.	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	CDS	1821278	1821407	0.48	+	1	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	exon	1821278	1821407	.	+	.	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	intron	1821408	1821510	.	+	.	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	CDS	1821511	1821918	0.93	+	0	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	exon	1821511	1821918	.	+	.	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
Ledus.C7	AUGUSTUS	stop_codon	1821919	1821921	.	+	0	transcript_id "Ledus.C7G021500.t1"; gene_id "Ledus.C7G021500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10645.t1 is derived from g11675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16853636	16854115	.	-	.	Ledus.S3G212200
Ledus.S3	AUGUSTUS	transcript	16853636	16854115	.	-	.	transcript_id "Ledus.S3G212200.t1"; gene_id "Ledus.S3G212200"
Ledus.S3	AUGUSTUS	stop_codon	16853633	16853635	.	-	0	transcript_id "Ledus.S3G212200.t1"; gene_id "Ledus.S3G212200"
Ledus.S3	AUGUSTUS	CDS	16853636	16853887	0.37	-	0	transcript_id "Ledus.S3G212200.t1"; gene_id "Ledus.S3G212200"
Ledus.S3	AUGUSTUS	exon	16853636	16853887	.	-	.	transcript_id "Ledus.S3G212200.t1"; gene_id "Ledus.S3G212200"
Ledus.S3	AUGUSTUS	intron	16853888	16853968	.	-	.	transcript_id "Ledus.S3G212200.t1"; gene_id "Ledus.S3G212200"
Ledus.S3	AUGUSTUS	CDS	16853969	16854115	0.99	-	0	transcript_id "Ledus.S3G212200.t1"; gene_id "Ledus.S3G212200"
Ledus.S3	AUGUSTUS	exon	16853969	16854115	.	-	.	transcript_id "Ledus.S3G212200.t1"; gene_id "Ledus.S3G212200"
Ledus.S3	AUGUSTUS	start_codon	16854113	16854115	.	-	0	transcript_id "Ledus.S3G212200.t1"; gene_id "Ledus.S3G212200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12470.t1 is derived from g6091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12183492	12185167	.	+	.	Ledus.S4G162600
Ledus.S4	AUGUSTUS	transcript	12183492	12185167	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	start_codon	12183492	12183494	.	+	0	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	CDS	12183492	12183665	0.31	+	0	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	exon	12183492	12183665	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	intron	12183666	12183777	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	CDS	12183778	12183882	1	+	0	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	exon	12183778	12183882	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	intron	12183883	12183979	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	CDS	12183980	12184057	0.95	+	0	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	exon	12183980	12184057	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	intron	12184058	12184159	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	CDS	12184160	12184301	0.95	+	0	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	exon	12184160	12184301	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	intron	12184302	12184384	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	CDS	12184385	12184455	1	+	2	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	exon	12184385	12184455	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	intron	12184456	12184531	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	CDS	12184532	12184628	1	+	0	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	exon	12184532	12184628	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	intron	12184629	12184713	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	CDS	12184714	12184835	1	+	2	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	exon	12184714	12184835	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	intron	12184836	12184912	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	CDS	12184913	12185167	1	+	0	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	exon	12184913	12185167	.	+	.	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
Ledus.S4	AUGUSTUS	stop_codon	12185168	12185170	.	+	0	transcript_id "Ledus.S4G162600.t1"; gene_id "Ledus.S4G162600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12253.t1 is derived from g5873.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10646110	10651894	.	+	.	Ledus.S4G140900
Ledus.S4	AUGUSTUS	transcript	10646110	10651894	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	start_codon	10646110	10646112	.	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10646110	10646120	0.69	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10646110	10646120	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10646121	10646262	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10646263	10646337	0.88	+	1	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10646263	10646337	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10646338	10646552	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10646553	10646564	0.87	+	1	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10646553	10646564	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10646565	10646665	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10646666	10647047	0.87	+	1	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10646666	10647047	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10647048	10647328	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10647329	10647598	1	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10647329	10647598	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10647599	10647721	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10647722	10647901	0.96	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10647722	10647901	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10647902	10648013	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10648014	10648289	1	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10648014	10648289	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10648290	10648419	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10648420	10648552	1	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10648420	10648552	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10648553	10648642	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10648643	10648733	1	+	2	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10648643	10648733	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10648734	10648821	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10648822	10648924	1	+	1	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10648822	10648924	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10648925	10649087	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10649088	10649191	1	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10649088	10649191	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10649192	10649285	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10649286	10649379	0.98	+	1	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10649286	10649379	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10649380	10649482	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10649483	10649638	0.99	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10649483	10649638	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10649639	10649749	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10649750	10649812	0.99	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10649750	10649812	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10649813	10649915	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10649916	10649981	1	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10649916	10649981	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10649982	10650073	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10650074	10650274	1	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10650074	10650274	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10650275	10650363	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10650364	10650441	1	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10650364	10650441	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10650442	10650531	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10650532	10650651	1	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10650532	10650651	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10650652	10650746	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10650747	10650827	1	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10650747	10650827	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10650828	10650948	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10650949	10651034	1	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10650949	10651034	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10651035	10651129	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10651130	10651211	1	+	1	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10651130	10651211	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10651212	10651294	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10651295	10651894	0.94	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10651295	10651894	.	+	.	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	stop_codon	10651895	10651897	.	+	0	transcript_id "Ledus.S4G140900.t1"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	transcript	10646110	10651894	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	start_codon	10646110	10646112	.	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10646110	10646120	0.61	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10646110	10646120	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10646121	10646262	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10646263	10646291	0.8	+	1	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10646263	10646291	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10646292	10646552	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10646553	10646564	0.72	+	2	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10646553	10646564	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10646565	10646679	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10646680	10647047	0.72	+	2	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10646680	10647047	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10647048	10647328	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10647329	10647598	1	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10647329	10647598	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10647599	10647721	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10647722	10647901	0.96	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10647722	10647901	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10647902	10648013	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10648014	10648289	1	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10648014	10648289	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10648290	10648419	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10648420	10648552	1	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10648420	10648552	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10648553	10648642	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10648643	10648733	1	+	2	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10648643	10648733	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10648734	10648821	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10648822	10648924	1	+	1	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10648822	10648924	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10648925	10649087	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10649088	10649191	1	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10649088	10649191	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10649192	10649285	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10649286	10649379	1	+	1	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10649286	10649379	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10649380	10649482	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10649483	10649638	1	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10649483	10649638	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10649639	10649749	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10649750	10649812	0.95	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10649750	10649812	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10649813	10649915	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10649916	10649981	1	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10649916	10649981	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10649982	10650073	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10650074	10650274	1	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10650074	10650274	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10650275	10650363	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10650364	10650441	1	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10650364	10650441	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10650442	10650531	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10650532	10650651	1	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10650532	10650651	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10650652	10650746	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10650747	10650827	1	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10650747	10650827	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10650828	10650948	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10650949	10651034	1	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10650949	10651034	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10651035	10651129	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10651130	10651211	1	+	1	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10651130	10651211	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	intron	10651212	10651294	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	CDS	10651295	10651894	0.96	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	exon	10651295	10651894	.	+	.	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
Ledus.S4	AUGUSTUS	stop_codon	10651895	10651897	.	+	0	transcript_id "Ledus.S4G140900.t2"; gene_id "Ledus.S4G140900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5375.t1 is derived from g2814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23881916	23882977	.	-	.	Ledus.S1G279600
Ledus.S1	AUGUSTUS	transcript	23881916	23882977	.	-	.	transcript_id "Ledus.S1G279600.t1"; gene_id "Ledus.S1G279600"
Ledus.S1	AUGUSTUS	stop_codon	23881913	23881915	.	-	0	transcript_id "Ledus.S1G279600.t1"; gene_id "Ledus.S1G279600"
Ledus.S1	AUGUSTUS	CDS	23881916	23881923	0.53	-	2	transcript_id "Ledus.S1G279600.t1"; gene_id "Ledus.S1G279600"
Ledus.S1	AUGUSTUS	exon	23881916	23881923	.	-	.	transcript_id "Ledus.S1G279600.t1"; gene_id "Ledus.S1G279600"
Ledus.S1	AUGUSTUS	intron	23881924	23882031	.	-	.	transcript_id "Ledus.S1G279600.t1"; gene_id "Ledus.S1G279600"
Ledus.S1	AUGUSTUS	CDS	23882032	23882711	0.49	-	1	transcript_id "Ledus.S1G279600.t1"; gene_id "Ledus.S1G279600"
Ledus.S1	AUGUSTUS	exon	23882032	23882711	.	-	.	transcript_id "Ledus.S1G279600.t1"; gene_id "Ledus.S1G279600"
Ledus.S1	AUGUSTUS	intron	23882712	23882792	.	-	.	transcript_id "Ledus.S1G279600.t1"; gene_id "Ledus.S1G279600"
Ledus.S1	AUGUSTUS	CDS	23882793	23882977	0.63	-	0	transcript_id "Ledus.S1G279600.t1"; gene_id "Ledus.S1G279600"
Ledus.S1	AUGUSTUS	exon	23882793	23882977	.	-	.	transcript_id "Ledus.S1G279600.t1"; gene_id "Ledus.S1G279600"
Ledus.S1	AUGUSTUS	start_codon	23882975	23882977	.	-	0	transcript_id "Ledus.S1G279600.t1"; gene_id "Ledus.S1G279600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10800.t1 is derived from g11832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17835495	17836944	.	-	.	Ledus.S3G227700
Ledus.S3	AUGUSTUS	transcript	17835495	17836944	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	stop_codon	17835492	17835494	.	-	0	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	CDS	17835495	17835584	1	-	0	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	exon	17835495	17835584	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	intron	17835585	17835661	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	CDS	17835662	17835781	1	-	0	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	exon	17835662	17835781	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	intron	17835782	17835866	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	CDS	17835867	17835898	1	-	2	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	exon	17835867	17835898	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	intron	17835899	17836006	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	CDS	17836007	17836036	0.98	-	2	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	exon	17836007	17836036	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	intron	17836037	17836118	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	CDS	17836119	17836291	1	-	1	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	exon	17836119	17836291	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	intron	17836292	17836381	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	CDS	17836382	17836518	1	-	0	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	exon	17836382	17836518	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	intron	17836519	17836650	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	CDS	17836651	17836779	1	-	0	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	exon	17836651	17836779	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	intron	17836780	17836854	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	CDS	17836855	17836944	0.98	-	0	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	exon	17836855	17836944	.	-	.	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
Ledus.S3	AUGUSTUS	start_codon	17836942	17836944	.	-	0	transcript_id "Ledus.S3G227700.t1"; gene_id "Ledus.S3G227700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9860.t1 is derived from g10890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10634863	10640709	.	-	.	Ledus.S3G133700
Ledus.S3	AUGUSTUS	transcript	10634863	10640709	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	stop_codon	10634860	10634862	.	-	0	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	CDS	10634863	10636068	1	-	0	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	exon	10634863	10636068	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	intron	10636069	10636181	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	CDS	10636182	10636423	1	-	2	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	exon	10636182	10636423	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	intron	10636424	10636544	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	CDS	10636545	10636972	0.99	-	1	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	exon	10636545	10636972	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	intron	10636973	10637105	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	CDS	10637106	10637473	0.99	-	0	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	exon	10637106	10637473	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	intron	10637474	10637592	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	CDS	10637593	10637816	1	-	2	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	exon	10637593	10637816	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	intron	10637817	10638174	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	CDS	10638175	10638303	1	-	2	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	exon	10638175	10638303	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	intron	10638304	10638375	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	CDS	10638376	10638491	1	-	1	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	exon	10638376	10638491	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	intron	10638492	10638808	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	CDS	10638809	10639068	1	-	0	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	exon	10638809	10639068	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	intron	10639069	10639240	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	CDS	10639241	10639441	1	-	0	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	exon	10639241	10639441	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	intron	10639442	10639688	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	CDS	10639689	10639864	1	-	2	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	exon	10639689	10639864	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	intron	10639865	10640218	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	CDS	10640219	10640273	1	-	0	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	exon	10640219	10640273	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	intron	10640274	10640364	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	CDS	10640365	10640709	1	-	0	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	exon	10640365	10640709	.	-	.	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
Ledus.S3	AUGUSTUS	start_codon	10640707	10640709	.	-	0	transcript_id "Ledus.S3G133700.t1"; gene_id "Ledus.S3G133700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12566.t1 is derived from g6188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12891997	12892894	.	+	.	Ledus.S4G172200
Ledus.S4	AUGUSTUS	transcript	12891997	12892894	.	+	.	transcript_id "Ledus.S4G172200.t1"; gene_id "Ledus.S4G172200"
Ledus.S4	AUGUSTUS	start_codon	12891997	12891999	.	+	0	transcript_id "Ledus.S4G172200.t1"; gene_id "Ledus.S4G172200"
Ledus.S4	AUGUSTUS	CDS	12891997	12892162	0.31	+	0	transcript_id "Ledus.S4G172200.t1"; gene_id "Ledus.S4G172200"
Ledus.S4	AUGUSTUS	exon	12891997	12892162	.	+	.	transcript_id "Ledus.S4G172200.t1"; gene_id "Ledus.S4G172200"
Ledus.S4	AUGUSTUS	intron	12892163	12892241	.	+	.	transcript_id "Ledus.S4G172200.t1"; gene_id "Ledus.S4G172200"
Ledus.S4	AUGUSTUS	CDS	12892242	12892894	0.5	+	2	transcript_id "Ledus.S4G172200.t1"; gene_id "Ledus.S4G172200"
Ledus.S4	AUGUSTUS	exon	12892242	12892894	.	+	.	transcript_id "Ledus.S4G172200.t1"; gene_id "Ledus.S4G172200"
Ledus.S4	AUGUSTUS	stop_codon	12892895	12892897	.	+	0	transcript_id "Ledus.S4G172200.t1"; gene_id "Ledus.S4G172200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10200.t1 is derived from g11230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13533437	13535093	.	+	.	Ledus.S3G167700
Ledus.S3	AUGUSTUS	transcript	13533437	13535093	.	+	.	transcript_id "Ledus.S3G167700.t1"; gene_id "Ledus.S3G167700"
Ledus.S3	AUGUSTUS	start_codon	13533437	13533439	.	+	0	transcript_id "Ledus.S3G167700.t1"; gene_id "Ledus.S3G167700"
Ledus.S3	AUGUSTUS	CDS	13533437	13533613	0.2	+	0	transcript_id "Ledus.S3G167700.t1"; gene_id "Ledus.S3G167700"
Ledus.S3	AUGUSTUS	exon	13533437	13533613	.	+	.	transcript_id "Ledus.S3G167700.t1"; gene_id "Ledus.S3G167700"
Ledus.S3	AUGUSTUS	intron	13533614	13533879	.	+	.	transcript_id "Ledus.S3G167700.t1"; gene_id "Ledus.S3G167700"
Ledus.S3	AUGUSTUS	CDS	13533880	13534236	0.18	+	0	transcript_id "Ledus.S3G167700.t1"; gene_id "Ledus.S3G167700"
Ledus.S3	AUGUSTUS	exon	13533880	13534236	.	+	.	transcript_id "Ledus.S3G167700.t1"; gene_id "Ledus.S3G167700"
Ledus.S3	AUGUSTUS	intron	13534237	13535021	.	+	.	transcript_id "Ledus.S3G167700.t1"; gene_id "Ledus.S3G167700"
Ledus.S3	AUGUSTUS	CDS	13535022	13535093	0.01	+	0	transcript_id "Ledus.S3G167700.t1"; gene_id "Ledus.S3G167700"
Ledus.S3	AUGUSTUS	exon	13535022	13535093	.	+	.	transcript_id "Ledus.S3G167700.t1"; gene_id "Ledus.S3G167700"
Ledus.S3	AUGUSTUS	stop_codon	13535094	13535096	.	+	0	transcript_id "Ledus.S3G167700.t1"; gene_id "Ledus.S3G167700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9798.t1 is derived from g10828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9910007	9915966	.	+	.	Ledus.S3G127500
Ledus.S3	AUGUSTUS	transcript	9910007	9915966	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	start_codon	9910007	9910009	.	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9910007	9910324	0.99	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9910007	9910324	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9910325	9910408	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9910409	9911089	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9910409	9911089	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9911090	9911240	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9911241	9911384	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9911241	9911384	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9911385	9911630	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9911631	9911921	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9911631	9911921	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9911922	9912026	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9912027	9912215	0.98	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9912027	9912215	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9912216	9912381	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9912382	9912546	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9912382	9912546	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9912547	9912647	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9912648	9912707	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9912648	9912707	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9912708	9912848	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9912849	9912911	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9912849	9912911	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9912912	9913090	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9913091	9913182	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9913091	9913182	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9913183	9913329	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9913330	9913426	1	+	1	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9913330	9913426	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9913427	9913612	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9913613	9913729	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9913613	9913729	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9913730	9913827	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9913828	9914046	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9913828	9914046	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9914047	9914124	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9914125	9914265	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9914125	9914265	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9914266	9914430	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9914431	9914598	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9914431	9914598	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9914599	9914688	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9914689	9914873	0.99	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9914689	9914873	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9914874	9914989	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9914990	9915083	0.99	+	1	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9914990	9915083	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9915084	9915175	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9915176	9915264	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9915176	9915264	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9915265	9915347	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9915348	9915573	1	+	1	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9915348	9915573	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9915574	9915667	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9915668	9915742	1	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9915668	9915742	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9915743	9915855	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9915856	9915966	0.98	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9915856	9915966	.	+	.	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	stop_codon	9915967	9915969	.	+	0	transcript_id "Ledus.S3G127500.t1"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	transcript	9910007	9915966	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	start_codon	9910007	9910009	.	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9910007	9910324	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9910007	9910324	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9910325	9910408	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9910409	9911089	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9910409	9911089	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9911090	9911246	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9911247	9911384	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9911247	9911384	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9911385	9911630	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9911631	9911921	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9911631	9911921	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9911922	9912026	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9912027	9912215	0.97	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9912027	9912215	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9912216	9912381	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9912382	9912546	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9912382	9912546	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9912547	9912647	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9912648	9912707	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9912648	9912707	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9912708	9912848	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9912849	9912911	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9912849	9912911	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9912912	9913090	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9913091	9913182	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9913091	9913182	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9913183	9913329	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9913330	9913426	1	+	1	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9913330	9913426	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9913427	9913612	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9913613	9913729	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9913613	9913729	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9913730	9913827	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9913828	9914046	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9913828	9914046	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9914047	9914124	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9914125	9914265	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9914125	9914265	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9914266	9914430	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9914431	9914598	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9914431	9914598	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9914599	9914688	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9914689	9914873	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9914689	9914873	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9914874	9914989	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9914990	9915083	1	+	1	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9914990	9915083	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9915084	9915175	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9915176	9915264	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9915176	9915264	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9915265	9915347	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9915348	9915573	1	+	1	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9915348	9915573	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9915574	9915667	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9915668	9915742	1	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9915668	9915742	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	intron	9915743	9915855	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	CDS	9915856	9915966	0.97	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	exon	9915856	9915966	.	+	.	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
Ledus.S3	AUGUSTUS	stop_codon	9915967	9915969	.	+	0	transcript_id "Ledus.S3G127500.t2"; gene_id "Ledus.S3G127500"
# This transcript jg6097.t2 is derived from g3540.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6097.t3 is derived from g3540.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6098.t1 is derived from g3541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28902450	28905543	.	+	.	Ledus.S1G351900
Ledus.S1	AUGUSTUS	transcript	28902450	28905543	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	start_codon	28902450	28902452	.	+	0	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	CDS	28902450	28902521	0.83	+	0	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	exon	28902450	28902521	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	intron	28902522	28902608	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	CDS	28902609	28902794	1	+	0	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	exon	28902609	28902794	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	intron	28902795	28902891	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	CDS	28902892	28903114	0.98	+	0	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	exon	28902892	28903114	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	intron	28903115	28903202	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	CDS	28903203	28903414	1	+	2	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	exon	28903203	28903414	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	intron	28903415	28903568	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	CDS	28903569	28903705	1	+	0	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	exon	28903569	28903705	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	intron	28903706	28903792	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	CDS	28903793	28903878	1	+	1	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	exon	28903793	28903878	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	intron	28903879	28903975	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	CDS	28903976	28904130	1	+	2	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	exon	28903976	28904130	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	intron	28904131	28904204	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	CDS	28904205	28904705	1	+	0	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	exon	28904205	28904705	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	intron	28904706	28904798	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	CDS	28904799	28904954	1	+	0	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	exon	28904799	28904954	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	intron	28904955	28905028	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	CDS	28905029	28905189	1	+	0	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	exon	28905029	28905189	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	intron	28905190	28905272	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	CDS	28905273	28905543	0.78	+	1	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	exon	28905273	28905543	.	+	.	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
Ledus.S1	AUGUSTUS	stop_codon	28905544	28905546	.	+	0	transcript_id "Ledus.S1G351900.t1"; gene_id "Ledus.S1G351900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10552.t1 is derived from g11582.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16071143	16073316	.	-	.	Ledus.S3G202900
Ledus.S3	AUGUSTUS	transcript	16071143	16071945	.	-	.	transcript_id "Ledus.S3G202900.t1"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	stop_codon	16071140	16071142	.	-	0	transcript_id "Ledus.S3G202900.t1"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	CDS	16071143	16071366	0.46	-	2	transcript_id "Ledus.S3G202900.t1"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	exon	16071143	16071366	.	-	.	transcript_id "Ledus.S3G202900.t1"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	intron	16071367	16071530	.	-	.	transcript_id "Ledus.S3G202900.t1"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	CDS	16071531	16071945	0.47	-	0	transcript_id "Ledus.S3G202900.t1"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	exon	16071531	16071945	.	-	.	transcript_id "Ledus.S3G202900.t1"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	start_codon	16071943	16071945	.	-	0	transcript_id "Ledus.S3G202900.t1"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	transcript	16071526	16073226	.	-	.	transcript_id "Ledus.S3G202900.t2"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	stop_codon	16071523	16071525	.	-	0	transcript_id "Ledus.S3G202900.t2"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	CDS	16071526	16073226	0.79	-	0	transcript_id "Ledus.S3G202900.t2"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	exon	16071526	16073226	.	-	.	transcript_id "Ledus.S3G202900.t2"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	start_codon	16073224	16073226	.	-	0	transcript_id "Ledus.S3G202900.t2"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	transcript	16071526	16073316	.	-	.	transcript_id "Ledus.S3G202900.t3"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	stop_codon	16071523	16071525	.	-	0	transcript_id "Ledus.S3G202900.t3"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	CDS	16071526	16073316	0.4	-	0	transcript_id "Ledus.S3G202900.t3"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	exon	16071526	16073316	.	-	.	transcript_id "Ledus.S3G202900.t3"; gene_id "Ledus.S3G202900"
Ledus.S3	AUGUSTUS	start_codon	16073314	16073316	.	-	0	transcript_id "Ledus.S3G202900.t3"; gene_id "Ledus.S3G202900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8618.t1 is derived from g9648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	690174	690377	.	-	.	Ledus.S3G009500
Ledus.S3	AUGUSTUS	transcript	690174	690377	.	-	.	transcript_id "Ledus.S3G009500.t1"; gene_id "Ledus.S3G009500"
Ledus.S3	AUGUSTUS	stop_codon	690171	690173	.	-	0	transcript_id "Ledus.S3G009500.t1"; gene_id "Ledus.S3G009500"
Ledus.S3	AUGUSTUS	CDS	690174	690377	0.65	-	0	transcript_id "Ledus.S3G009500.t1"; gene_id "Ledus.S3G009500"
Ledus.S3	AUGUSTUS	exon	690174	690377	.	-	.	transcript_id "Ledus.S3G009500.t1"; gene_id "Ledus.S3G009500"
Ledus.S3	AUGUSTUS	start_codon	690375	690377	.	-	0	transcript_id "Ledus.S3G009500.t1"; gene_id "Ledus.S3G009500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6557.t1 is derived from g4000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32342568	32342870	.	-	.	Ledus.S1G397800
Ledus.S1	AUGUSTUS	transcript	32342568	32342870	.	-	.	transcript_id "Ledus.S1G397800.t1"; gene_id "Ledus.S1G397800"
Ledus.S1	AUGUSTUS	stop_codon	32342565	32342567	.	-	0	transcript_id "Ledus.S1G397800.t1"; gene_id "Ledus.S1G397800"
Ledus.S1	AUGUSTUS	CDS	32342568	32342870	0.63	-	0	transcript_id "Ledus.S1G397800.t1"; gene_id "Ledus.S1G397800"
Ledus.S1	AUGUSTUS	exon	32342568	32342870	.	-	.	transcript_id "Ledus.S1G397800.t1"; gene_id "Ledus.S1G397800"
Ledus.S1	AUGUSTUS	start_codon	32342868	32342870	.	-	0	transcript_id "Ledus.S1G397800.t1"; gene_id "Ledus.S1G397800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4160.t1 is derived from g1596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15033592	15033975	.	+	.	Ledus.S1G158100
Ledus.S1	AUGUSTUS	transcript	15033592	15033975	.	+	.	transcript_id "Ledus.S1G158100.t1"; gene_id "Ledus.S1G158100"
Ledus.S1	AUGUSTUS	start_codon	15033592	15033594	.	+	0	transcript_id "Ledus.S1G158100.t1"; gene_id "Ledus.S1G158100"
Ledus.S1	AUGUSTUS	CDS	15033592	15033975	0.33	+	0	transcript_id "Ledus.S1G158100.t1"; gene_id "Ledus.S1G158100"
Ledus.S1	AUGUSTUS	exon	15033592	15033975	.	+	.	transcript_id "Ledus.S1G158100.t1"; gene_id "Ledus.S1G158100"
Ledus.S1	AUGUSTUS	stop_codon	15033976	15033978	.	+	0	transcript_id "Ledus.S1G158100.t1"; gene_id "Ledus.S1G158100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6219.t1 is derived from g3662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29723892	29726108	.	-	.	Ledus.S1G364000
Ledus.S1	AUGUSTUS	transcript	29723892	29726108	.	-	.	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	stop_codon	29723889	29723891	.	-	0	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	CDS	29723892	29724074	1	-	0	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	exon	29723892	29724074	.	-	.	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	intron	29724075	29724169	.	-	.	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	CDS	29724170	29724566	0.53	-	1	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	exon	29724170	29724566	.	-	.	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	intron	29724567	29724828	.	-	.	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	CDS	29724829	29725049	0.8	-	0	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	exon	29724829	29725049	.	-	.	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	intron	29725050	29725139	.	-	.	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	CDS	29725140	29725343	1	-	0	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	exon	29725140	29725343	.	-	.	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	intron	29725344	29725427	.	-	.	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	CDS	29725428	29726108	0.5	-	0	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	exon	29725428	29726108	.	-	.	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
Ledus.S1	AUGUSTUS	start_codon	29726106	29726108	.	-	0	transcript_id "Ledus.S1G364000.t1"; gene_id "Ledus.S1G364000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4825.t1 is derived from g2263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19971175	19972036	.	+	.	Ledus.S1G224600
Ledus.S1	AUGUSTUS	transcript	19971175	19972036	.	+	.	transcript_id "Ledus.S1G224600.t1"; gene_id "Ledus.S1G224600"
Ledus.S1	AUGUSTUS	start_codon	19971175	19971177	.	+	0	transcript_id "Ledus.S1G224600.t1"; gene_id "Ledus.S1G224600"
Ledus.S1	AUGUSTUS	CDS	19971175	19971244	0.97	+	0	transcript_id "Ledus.S1G224600.t1"; gene_id "Ledus.S1G224600"
Ledus.S1	AUGUSTUS	exon	19971175	19971244	.	+	.	transcript_id "Ledus.S1G224600.t1"; gene_id "Ledus.S1G224600"
Ledus.S1	AUGUSTUS	intron	19971245	19971365	.	+	.	transcript_id "Ledus.S1G224600.t1"; gene_id "Ledus.S1G224600"
Ledus.S1	AUGUSTUS	CDS	19971366	19972036	0.25	+	2	transcript_id "Ledus.S1G224600.t1"; gene_id "Ledus.S1G224600"
Ledus.S1	AUGUSTUS	exon	19971366	19972036	.	+	.	transcript_id "Ledus.S1G224600.t1"; gene_id "Ledus.S1G224600"
Ledus.S1	AUGUSTUS	stop_codon	19972037	19972039	.	+	0	transcript_id "Ledus.S1G224600.t1"; gene_id "Ledus.S1G224600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5656.t1 is derived from g3095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25607180	25607977	.	-	.	Ledus.S1G307700
Ledus.S1	AUGUSTUS	transcript	25607180	25607977	.	-	.	transcript_id "Ledus.S1G307700.t1"; gene_id "Ledus.S1G307700"
Ledus.S1	AUGUSTUS	stop_codon	25607177	25607179	.	-	0	transcript_id "Ledus.S1G307700.t1"; gene_id "Ledus.S1G307700"
Ledus.S1	AUGUSTUS	CDS	25607180	25607977	0.87	-	0	transcript_id "Ledus.S1G307700.t1"; gene_id "Ledus.S1G307700"
Ledus.S1	AUGUSTUS	exon	25607180	25607977	.	-	.	transcript_id "Ledus.S1G307700.t1"; gene_id "Ledus.S1G307700"
Ledus.S1	AUGUSTUS	start_codon	25607975	25607977	.	-	0	transcript_id "Ledus.S1G307700.t1"; gene_id "Ledus.S1G307700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6924.t1 is derived from g4368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35465781	35465987	.	+	.	Ledus.S1G434500
Ledus.S1	AUGUSTUS	transcript	35465781	35465987	.	+	.	transcript_id "Ledus.S1G434500.t1"; gene_id "Ledus.S1G434500"
Ledus.S1	AUGUSTUS	start_codon	35465781	35465783	.	+	0	transcript_id "Ledus.S1G434500.t1"; gene_id "Ledus.S1G434500"
Ledus.S1	AUGUSTUS	CDS	35465781	35465987	0.61	+	0	transcript_id "Ledus.S1G434500.t1"; gene_id "Ledus.S1G434500"
Ledus.S1	AUGUSTUS	exon	35465781	35465987	.	+	.	transcript_id "Ledus.S1G434500.t1"; gene_id "Ledus.S1G434500"
Ledus.S1	AUGUSTUS	stop_codon	35465988	35465990	.	+	0	transcript_id "Ledus.S1G434500.t1"; gene_id "Ledus.S1G434500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6424.t1 is derived from g3867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31190469	31192325	.	+	.	Ledus.S1G384500
Ledus.S1	AUGUSTUS	transcript	31190469	31192325	.	+	.	transcript_id "Ledus.S1G384500.t1"; gene_id "Ledus.S1G384500"
Ledus.S1	AUGUSTUS	start_codon	31190469	31190471	.	+	0	transcript_id "Ledus.S1G384500.t1"; gene_id "Ledus.S1G384500"
Ledus.S1	AUGUSTUS	CDS	31190469	31192325	0.38	+	0	transcript_id "Ledus.S1G384500.t1"; gene_id "Ledus.S1G384500"
Ledus.S1	AUGUSTUS	exon	31190469	31192325	.	+	.	transcript_id "Ledus.S1G384500.t1"; gene_id "Ledus.S1G384500"
Ledus.S1	AUGUSTUS	stop_codon	31192326	31192328	.	+	0	transcript_id "Ledus.S1G384500.t1"; gene_id "Ledus.S1G384500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10815.t1 is derived from g11847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18017652	18018269	.	-	.	Ledus.S3G229200
Ledus.S3	AUGUSTUS	transcript	18017652	18018269	.	-	.	transcript_id "Ledus.S3G229200.t1"; gene_id "Ledus.S3G229200"
Ledus.S3	AUGUSTUS	stop_codon	18017649	18017651	.	-	0	transcript_id "Ledus.S3G229200.t1"; gene_id "Ledus.S3G229200"
Ledus.S3	AUGUSTUS	CDS	18017652	18018269	0.6	-	0	transcript_id "Ledus.S3G229200.t1"; gene_id "Ledus.S3G229200"
Ledus.S3	AUGUSTUS	exon	18017652	18018269	.	-	.	transcript_id "Ledus.S3G229200.t1"; gene_id "Ledus.S3G229200"
Ledus.S3	AUGUSTUS	start_codon	18018267	18018269	.	-	0	transcript_id "Ledus.S3G229200.t1"; gene_id "Ledus.S3G229200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5740.t1 is derived from g3179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26425666	26427831	.	-	.	Ledus.S1G316100
Ledus.S1	AUGUSTUS	transcript	26425666	26427831	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	stop_codon	26425663	26425665	.	-	0	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	CDS	26425666	26425733	1	-	2	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	exon	26425666	26425733	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	intron	26425734	26425825	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	CDS	26425826	26425876	0.62	-	2	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	exon	26425826	26425876	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	intron	26425877	26426002	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	CDS	26426003	26426054	0.62	-	0	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	exon	26426003	26426054	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	intron	26426055	26426130	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	CDS	26426131	26426220	1	-	0	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	exon	26426131	26426220	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	intron	26426221	26426306	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	CDS	26426307	26426402	0.98	-	0	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	exon	26426307	26426402	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	intron	26426403	26426508	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	CDS	26426509	26426608	0.95	-	1	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	exon	26426509	26426608	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	intron	26426609	26426791	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	CDS	26426792	26426847	1	-	0	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	exon	26426792	26426847	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	intron	26426848	26426966	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	CDS	26426967	26427002	0.98	-	0	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	exon	26426967	26427002	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	intron	26427003	26427106	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	CDS	26427107	26427183	0.97	-	2	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	exon	26427107	26427183	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	intron	26427184	26427288	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	CDS	26427289	26427355	0.96	-	0	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	exon	26427289	26427355	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	intron	26427356	26427458	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	CDS	26427459	26427503	1	-	0	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	exon	26427459	26427503	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	intron	26427504	26427759	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	CDS	26427760	26427831	0.68	-	0	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	exon	26427760	26427831	.	-	.	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
Ledus.S1	AUGUSTUS	start_codon	26427829	26427831	.	-	0	transcript_id "Ledus.S1G316100.t1"; gene_id "Ledus.S1G316100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9356.t1 is derived from g10386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6341937	6344570	.	+	.	Ledus.S3G083300
Ledus.S3	AUGUSTUS	transcript	6341937	6344570	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	start_codon	6341937	6341939	.	+	0	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6341937	6342374	0.68	+	0	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6341937	6342374	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6342375	6342556	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6342557	6342947	1	+	0	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6342557	6342947	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6342948	6343095	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343096	6343138	1	+	2	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343096	6343138	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6343139	6343284	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343285	6343390	1	+	1	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343285	6343390	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6343391	6343485	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343486	6343596	1	+	0	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343486	6343596	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6343597	6343751	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343752	6343893	0.98	+	0	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343752	6343893	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6343894	6343998	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343999	6344040	0.92	+	2	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343999	6344040	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6344041	6344219	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6344220	6344286	0.9	+	2	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6344220	6344286	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6344287	6344389	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6344390	6344570	0.83	+	1	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6344390	6344570	.	+	.	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	stop_codon	6344571	6344573	.	+	0	transcript_id "Ledus.S3G083300.t1"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	transcript	6341937	6344570	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	start_codon	6341937	6341939	.	+	0	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6341937	6342374	0.65	+	0	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6341937	6342374	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6342375	6342556	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6342557	6342947	1	+	0	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6342557	6342947	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6342948	6343095	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343096	6343138	1	+	2	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343096	6343138	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6343139	6343293	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343294	6343390	1	+	1	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343294	6343390	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6343391	6343485	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343486	6343596	1	+	0	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343486	6343596	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6343597	6343751	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343752	6343893	0.99	+	0	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343752	6343893	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6343894	6343998	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343999	6344040	0.87	+	2	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343999	6344040	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6344041	6344219	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6344220	6344286	0.94	+	2	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6344220	6344286	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6344287	6344389	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6344390	6344570	0.85	+	1	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6344390	6344570	.	+	.	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	stop_codon	6344571	6344573	.	+	0	transcript_id "Ledus.S3G083300.t2"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	transcript	6341937	6344570	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	start_codon	6341937	6341939	.	+	0	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6341937	6342374	0.72	+	0	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6341937	6342374	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6342375	6342605	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6342606	6342655	0.82	+	0	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6342606	6342655	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6342656	6342750	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6342751	6342947	0.8	+	1	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6342751	6342947	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6342948	6343095	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343096	6343138	1	+	2	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343096	6343138	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6343139	6343293	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343294	6343390	0.79	+	1	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343294	6343390	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6343391	6343485	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343486	6343596	1	+	0	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343486	6343596	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6343597	6343751	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343752	6343893	0.99	+	0	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343752	6343893	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6343894	6343998	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6343999	6344040	0.84	+	2	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6343999	6344040	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6344041	6344219	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6344220	6344286	0.98	+	2	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6344220	6344286	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	intron	6344287	6344389	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	CDS	6344390	6344570	0.82	+	1	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	exon	6344390	6344570	.	+	.	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
Ledus.S3	AUGUSTUS	stop_codon	6344571	6344573	.	+	0	transcript_id "Ledus.S3G083300.t3"; gene_id "Ledus.S3G083300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12315.t1 is derived from g5936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11178899	11180693	.	-	.	Ledus.S4G147100
Ledus.S4	AUGUSTUS	transcript	11178899	11180693	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	stop_codon	11178896	11178898	.	-	0	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	CDS	11178899	11178955	1	-	0	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	exon	11178899	11178955	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	intron	11178956	11179038	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	CDS	11179039	11179194	1	-	0	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	exon	11179039	11179194	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	intron	11179195	11179275	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	CDS	11179276	11179422	1	-	0	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	exon	11179276	11179422	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	intron	11179423	11179547	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	CDS	11179548	11179635	1	-	1	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	exon	11179548	11179635	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	intron	11179636	11179758	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	CDS	11179759	11179904	1	-	0	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	exon	11179759	11179904	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	intron	11179905	11180033	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	CDS	11180034	11180268	1	-	1	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	exon	11180034	11180268	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	intron	11180269	11180367	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	CDS	11180368	11180693	1	-	0	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	exon	11180368	11180693	.	-	.	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
Ledus.S4	AUGUSTUS	start_codon	11180691	11180693	.	-	0	transcript_id "Ledus.S4G147100.t1"; gene_id "Ledus.S4G147100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9353.t1 is derived from g10383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6337524	6337840	.	+	.	Ledus.S3G083000
Ledus.S3	AUGUSTUS	transcript	6337524	6337840	.	+	.	transcript_id "Ledus.S3G083000.t1"; gene_id "Ledus.S3G083000"
Ledus.S3	AUGUSTUS	start_codon	6337524	6337526	.	+	0	transcript_id "Ledus.S3G083000.t1"; gene_id "Ledus.S3G083000"
Ledus.S3	AUGUSTUS	CDS	6337524	6337682	0.92	+	0	transcript_id "Ledus.S3G083000.t1"; gene_id "Ledus.S3G083000"
Ledus.S3	AUGUSTUS	exon	6337524	6337682	.	+	.	transcript_id "Ledus.S3G083000.t1"; gene_id "Ledus.S3G083000"
Ledus.S3	AUGUSTUS	intron	6337683	6337777	.	+	.	transcript_id "Ledus.S3G083000.t1"; gene_id "Ledus.S3G083000"
Ledus.S3	AUGUSTUS	CDS	6337778	6337840	1	+	0	transcript_id "Ledus.S3G083000.t1"; gene_id "Ledus.S3G083000"
Ledus.S3	AUGUSTUS	exon	6337778	6337840	.	+	.	transcript_id "Ledus.S3G083000.t1"; gene_id "Ledus.S3G083000"
Ledus.S3	AUGUSTUS	stop_codon	6337841	6337843	.	+	0	transcript_id "Ledus.S3G083000.t1"; gene_id "Ledus.S3G083000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3549.t1 is derived from g985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9396073	9398010	.	+	.	Ledus.S1G097000
Ledus.S1	AUGUSTUS	transcript	9396073	9398010	.	+	.	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	start_codon	9396073	9396075	.	+	0	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	CDS	9396073	9396204	0.64	+	0	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	exon	9396073	9396204	.	+	.	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	intron	9396205	9396567	.	+	.	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	CDS	9396568	9396791	0.48	+	0	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	exon	9396568	9396791	.	+	.	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	intron	9396792	9396939	.	+	.	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	CDS	9396940	9397294	0.23	+	1	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	exon	9396940	9397294	.	+	.	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	intron	9397295	9397379	.	+	.	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	CDS	9397380	9397504	0.29	+	0	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	exon	9397380	9397504	.	+	.	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	intron	9397505	9397751	.	+	.	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	CDS	9397752	9398010	0.25	+	1	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	exon	9397752	9398010	.	+	.	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
Ledus.S1	AUGUSTUS	stop_codon	9398011	9398013	.	+	0	transcript_id "Ledus.S1G097000.t1"; gene_id "Ledus.S1G097000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1814.t1 is derived from g8677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12723876	12725054	.	+	.	Ledus.S2G169600
Ledus.S2	AUGUSTUS	transcript	12723876	12725054	.	+	.	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	start_codon	12723876	12723878	.	+	0	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	CDS	12723876	12724188	0.41	+	0	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	exon	12723876	12724188	.	+	.	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	intron	12724189	12724417	.	+	.	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	CDS	12724418	12724522	0.28	+	2	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	exon	12724418	12724522	.	+	.	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	intron	12724523	12724707	.	+	.	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	CDS	12724708	12724736	0.21	+	2	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	exon	12724708	12724736	.	+	.	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	intron	12724737	12724823	.	+	.	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	CDS	12724824	12725054	0.64	+	0	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	exon	12724824	12725054	.	+	.	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
Ledus.S2	AUGUSTUS	stop_codon	12725055	12725057	.	+	0	transcript_id "Ledus.S2G169600.t1"; gene_id "Ledus.S2G169600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1922.t1 is derived from g8785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13428384	13428980	.	-	.	Ledus.S2G180400
Ledus.S2	AUGUSTUS	transcript	13428384	13428980	.	-	.	transcript_id "Ledus.S2G180400.t1"; gene_id "Ledus.S2G180400"
Ledus.S2	AUGUSTUS	stop_codon	13428381	13428383	.	-	0	transcript_id "Ledus.S2G180400.t1"; gene_id "Ledus.S2G180400"
Ledus.S2	AUGUSTUS	CDS	13428384	13428980	0.96	-	0	transcript_id "Ledus.S2G180400.t1"; gene_id "Ledus.S2G180400"
Ledus.S2	AUGUSTUS	exon	13428384	13428980	.	-	.	transcript_id "Ledus.S2G180400.t1"; gene_id "Ledus.S2G180400"
Ledus.S2	AUGUSTUS	start_codon	13428978	13428980	.	-	0	transcript_id "Ledus.S2G180400.t1"; gene_id "Ledus.S2G180400"
# This transcript jg10111.t2 is derived from g11141.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10112.t1 is derived from g11142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12884741	12886739	.	-	.	Ledus.S3G158900
Ledus.S3	AUGUSTUS	transcript	12884741	12886739	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	stop_codon	12884738	12884740	.	-	0	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	CDS	12884741	12884836	0.79	-	0	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	exon	12884741	12884836	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	intron	12884837	12884972	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	CDS	12884973	12885019	1	-	2	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	exon	12884973	12885019	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	intron	12885020	12885150	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	CDS	12885151	12885268	1	-	0	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	exon	12885151	12885268	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	intron	12885269	12885439	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	CDS	12885440	12885514	1	-	0	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	exon	12885440	12885514	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	intron	12885515	12885705	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	CDS	12885706	12885760	1	-	1	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	exon	12885706	12885760	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	intron	12885761	12885904	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	CDS	12885905	12885957	1	-	0	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	exon	12885905	12885957	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	intron	12885958	12886044	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	CDS	12886045	12886111	1	-	1	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	exon	12886045	12886111	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	intron	12886112	12886323	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	CDS	12886324	12886448	1	-	0	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	exon	12886324	12886448	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	intron	12886449	12886571	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	CDS	12886572	12886739	0.88	-	0	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	exon	12886572	12886739	.	-	.	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
Ledus.S3	AUGUSTUS	start_codon	12886737	12886739	.	-	0	transcript_id "Ledus.S3G158900.t1"; gene_id "Ledus.S3G158900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3143.t1 is derived from g578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6241383	6242023	.	-	.	Ledus.S1G056400
Ledus.S1	AUGUSTUS	transcript	6241383	6242023	.	-	.	transcript_id "Ledus.S1G056400.t1"; gene_id "Ledus.S1G056400"
Ledus.S1	AUGUSTUS	stop_codon	6241380	6241382	.	-	0	transcript_id "Ledus.S1G056400.t1"; gene_id "Ledus.S1G056400"
Ledus.S1	AUGUSTUS	CDS	6241383	6241600	1	-	2	transcript_id "Ledus.S1G056400.t1"; gene_id "Ledus.S1G056400"
Ledus.S1	AUGUSTUS	exon	6241383	6241600	.	-	.	transcript_id "Ledus.S1G056400.t1"; gene_id "Ledus.S1G056400"
Ledus.S1	AUGUSTUS	intron	6241601	6241708	.	-	.	transcript_id "Ledus.S1G056400.t1"; gene_id "Ledus.S1G056400"
Ledus.S1	AUGUSTUS	CDS	6241709	6241831	0.4	-	2	transcript_id "Ledus.S1G056400.t1"; gene_id "Ledus.S1G056400"
Ledus.S1	AUGUSTUS	exon	6241709	6241831	.	-	.	transcript_id "Ledus.S1G056400.t1"; gene_id "Ledus.S1G056400"
Ledus.S1	AUGUSTUS	intron	6241832	6241986	.	-	.	transcript_id "Ledus.S1G056400.t1"; gene_id "Ledus.S1G056400"
Ledus.S1	AUGUSTUS	CDS	6241987	6242023	0.44	-	0	transcript_id "Ledus.S1G056400.t1"; gene_id "Ledus.S1G056400"
Ledus.S1	AUGUSTUS	exon	6241987	6242023	.	-	.	transcript_id "Ledus.S1G056400.t1"; gene_id "Ledus.S1G056400"
Ledus.S1	AUGUSTUS	start_codon	6242021	6242023	.	-	0	transcript_id "Ledus.S1G056400.t1"; gene_id "Ledus.S1G056400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2240.t1 is derived from g9103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16325344	16326418	.	+	.	Ledus.S2G212200
Ledus.S2	AUGUSTUS	transcript	16325344	16326418	.	+	.	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	start_codon	16325344	16325346	.	+	0	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	CDS	16325344	16325676	0.88	+	0	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	exon	16325344	16325676	.	+	.	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	intron	16325677	16325934	.	+	.	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	CDS	16325935	16326024	0.97	+	0	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	exon	16325935	16326024	.	+	.	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	intron	16326025	16326110	.	+	.	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	CDS	16326111	16326163	0.53	+	0	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	exon	16326111	16326163	.	+	.	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	intron	16326164	16326225	.	+	.	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	CDS	16326226	16326418	0.46	+	1	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	exon	16326226	16326418	.	+	.	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
Ledus.S2	AUGUSTUS	stop_codon	16326419	16326421	.	+	0	transcript_id "Ledus.S2G212200.t1"; gene_id "Ledus.S2G212200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8026.t1 is derived from g12697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8581495	8583059	.	+	.	Ledus.S5G080400
Ledus.S5	AUGUSTUS	transcript	8581495	8583059	.	+	.	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	start_codon	8581495	8581497	.	+	0	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	CDS	8581495	8581827	0.9	+	0	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	exon	8581495	8581827	.	+	.	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	intron	8581828	8581903	.	+	.	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	CDS	8581904	8582077	1	+	0	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	exon	8581904	8582077	.	+	.	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	intron	8582078	8582163	.	+	.	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	CDS	8582164	8582297	1	+	0	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	exon	8582164	8582297	.	+	.	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	intron	8582298	8582388	.	+	.	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	CDS	8582389	8582479	0.7	+	1	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	exon	8582389	8582479	.	+	.	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	intron	8582480	8582685	.	+	.	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	CDS	8582686	8582863	0.38	+	0	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	exon	8582686	8582863	.	+	.	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	intron	8582864	8583033	.	+	.	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	CDS	8583034	8583059	0.47	+	2	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	exon	8583034	8583059	.	+	.	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
Ledus.S5	AUGUSTUS	stop_codon	8583060	8583062	.	+	0	transcript_id "Ledus.S5G080400.t1"; gene_id "Ledus.S5G080400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7908.t1 is derived from g12579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7773047	7777241	.	+	.	Ledus.S5G068600
Ledus.S5	AUGUSTUS	transcript	7773047	7777241	.	+	.	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	start_codon	7773047	7773049	.	+	0	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	CDS	7773047	7775120	0.26	+	0	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	exon	7773047	7775120	.	+	.	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	intron	7775121	7775368	.	+	.	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	CDS	7775369	7776285	1	+	2	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	exon	7775369	7776285	.	+	.	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	intron	7776286	7776618	.	+	.	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	CDS	7776619	7776671	1	+	0	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	exon	7776619	7776671	.	+	.	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	intron	7776672	7776985	.	+	.	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	CDS	7776986	7777241	0.99	+	1	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	exon	7776986	7777241	.	+	.	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
Ledus.S5	AUGUSTUS	stop_codon	7777242	7777244	.	+	0	transcript_id "Ledus.S5G068600.t1"; gene_id "Ledus.S5G068600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9654.t1 is derived from g10684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8838977	8840332	.	+	.	Ledus.S3G113100
Ledus.S3	AUGUSTUS	transcript	8838977	8840332	.	+	.	transcript_id "Ledus.S3G113100.t1"; gene_id "Ledus.S3G113100"
Ledus.S3	AUGUSTUS	start_codon	8838977	8838979	.	+	0	transcript_id "Ledus.S3G113100.t1"; gene_id "Ledus.S3G113100"
Ledus.S3	AUGUSTUS	CDS	8838977	8840332	1	+	0	transcript_id "Ledus.S3G113100.t1"; gene_id "Ledus.S3G113100"
Ledus.S3	AUGUSTUS	exon	8838977	8840332	.	+	.	transcript_id "Ledus.S3G113100.t1"; gene_id "Ledus.S3G113100"
Ledus.S3	AUGUSTUS	stop_codon	8840333	8840335	.	+	0	transcript_id "Ledus.S3G113100.t1"; gene_id "Ledus.S3G113100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13.t1 is derived from g9442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C45	AUGUSTUS	gene	2601	2986	.	-	.	Ledus.C45G000100
Ledus.C45	AUGUSTUS	transcript	2601	2986	.	-	.	transcript_id "Ledus.C45G000100.t1"; gene_id "Ledus.C45G000100"
Ledus.C45	AUGUSTUS	stop_codon	2598	2600	.	-	0	transcript_id "Ledus.C45G000100.t1"; gene_id "Ledus.C45G000100"
Ledus.C45	AUGUSTUS	CDS	2601	2693	0.35	-	0	transcript_id "Ledus.C45G000100.t1"; gene_id "Ledus.C45G000100"
Ledus.C45	AUGUSTUS	exon	2601	2693	.	-	.	transcript_id "Ledus.C45G000100.t1"; gene_id "Ledus.C45G000100"
Ledus.C45	AUGUSTUS	intron	2694	2767	.	-	.	transcript_id "Ledus.C45G000100.t1"; gene_id "Ledus.C45G000100"
Ledus.C45	AUGUSTUS	CDS	2768	2986	0.33	-	0	transcript_id "Ledus.C45G000100.t1"; gene_id "Ledus.C45G000100"
Ledus.C45	AUGUSTUS	exon	2768	2986	.	-	.	transcript_id "Ledus.C45G000100.t1"; gene_id "Ledus.C45G000100"
Ledus.C45	AUGUSTUS	start_codon	2984	2986	.	-	0	transcript_id "Ledus.C45G000100.t1"; gene_id "Ledus.C45G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg994.t1 is derived from g7855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6534709	6535297	.	+	.	Ledus.S2G087600
Ledus.S2	AUGUSTUS	transcript	6534709	6535297	.	+	.	transcript_id "Ledus.S2G087600.t1"; gene_id "Ledus.S2G087600"
Ledus.S2	AUGUSTUS	start_codon	6534709	6534711	.	+	0	transcript_id "Ledus.S2G087600.t1"; gene_id "Ledus.S2G087600"
Ledus.S2	AUGUSTUS	CDS	6534709	6534859	0.62	+	0	transcript_id "Ledus.S2G087600.t1"; gene_id "Ledus.S2G087600"
Ledus.S2	AUGUSTUS	exon	6534709	6534859	.	+	.	transcript_id "Ledus.S2G087600.t1"; gene_id "Ledus.S2G087600"
Ledus.S2	AUGUSTUS	intron	6534860	6535004	.	+	.	transcript_id "Ledus.S2G087600.t1"; gene_id "Ledus.S2G087600"
Ledus.S2	AUGUSTUS	CDS	6535005	6535297	0.88	+	2	transcript_id "Ledus.S2G087600.t1"; gene_id "Ledus.S2G087600"
Ledus.S2	AUGUSTUS	exon	6535005	6535297	.	+	.	transcript_id "Ledus.S2G087600.t1"; gene_id "Ledus.S2G087600"
Ledus.S2	AUGUSTUS	stop_codon	6535298	6535300	.	+	0	transcript_id "Ledus.S2G087600.t1"; gene_id "Ledus.S2G087600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1756.t1 is derived from g8618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12345741	12346407	.	+	.	Ledus.S2G163800
Ledus.S2	AUGUSTUS	transcript	12345741	12346407	.	+	.	transcript_id "Ledus.S2G163800.t1"; gene_id "Ledus.S2G163800"
Ledus.S2	AUGUSTUS	start_codon	12345741	12345743	.	+	0	transcript_id "Ledus.S2G163800.t1"; gene_id "Ledus.S2G163800"
Ledus.S2	AUGUSTUS	CDS	12345741	12345922	0.78	+	0	transcript_id "Ledus.S2G163800.t1"; gene_id "Ledus.S2G163800"
Ledus.S2	AUGUSTUS	exon	12345741	12345922	.	+	.	transcript_id "Ledus.S2G163800.t1"; gene_id "Ledus.S2G163800"
Ledus.S2	AUGUSTUS	intron	12345923	12346100	.	+	.	transcript_id "Ledus.S2G163800.t1"; gene_id "Ledus.S2G163800"
Ledus.S2	AUGUSTUS	CDS	12346101	12346407	1	+	1	transcript_id "Ledus.S2G163800.t1"; gene_id "Ledus.S2G163800"
Ledus.S2	AUGUSTUS	exon	12346101	12346407	.	+	.	transcript_id "Ledus.S2G163800.t1"; gene_id "Ledus.S2G163800"
Ledus.S2	AUGUSTUS	stop_codon	12346408	12346410	.	+	0	transcript_id "Ledus.S2G163800.t1"; gene_id "Ledus.S2G163800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4714.t1 is derived from g2152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19213682	19215256	.	-	.	Ledus.S1G213500
Ledus.S1	AUGUSTUS	transcript	19213682	19215256	.	-	.	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	stop_codon	19213679	19213681	.	-	0	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	CDS	19213682	19214086	0.52	-	0	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	exon	19213682	19214086	.	-	.	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	intron	19214087	19214249	.	-	.	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	CDS	19214250	19214298	0.26	-	1	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	exon	19214250	19214298	.	-	.	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	intron	19214299	19214505	.	-	.	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	CDS	19214506	19214894	0.26	-	0	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	exon	19214506	19214894	.	-	.	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	intron	19214895	19214992	.	-	.	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	CDS	19214993	19215256	0.9	-	0	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	exon	19214993	19215256	.	-	.	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
Ledus.S1	AUGUSTUS	start_codon	19215254	19215256	.	-	0	transcript_id "Ledus.S1G213500.t1"; gene_id "Ledus.S1G213500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9030.t1 is derived from g10060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3936644	3938874	.	+	.	Ledus.S3G050700
Ledus.S3	AUGUSTUS	transcript	3936644	3938874	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	start_codon	3936644	3936646	.	+	0	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	CDS	3936644	3936834	0.7	+	0	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	exon	3936644	3936834	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	intron	3936835	3936920	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	CDS	3936921	3937095	0.9	+	1	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	exon	3936921	3937095	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	intron	3937096	3937211	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	CDS	3937212	3937370	0.99	+	0	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	exon	3937212	3937370	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	intron	3937371	3937518	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	CDS	3937519	3937615	1	+	0	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	exon	3937519	3937615	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	intron	3937616	3937701	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	CDS	3937702	3937772	1	+	2	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	exon	3937702	3937772	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	intron	3937773	3937868	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	CDS	3937869	3937920	1	+	0	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	exon	3937869	3937920	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	intron	3937921	3938026	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	CDS	3938027	3938075	1	+	2	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	exon	3938027	3938075	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	intron	3938076	3938175	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	CDS	3938176	3938334	1	+	1	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	exon	3938176	3938334	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	intron	3938335	3938421	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	CDS	3938422	3938541	1	+	1	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	exon	3938422	3938541	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	intron	3938542	3938630	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	CDS	3938631	3938874	1	+	1	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	exon	3938631	3938874	.	+	.	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
Ledus.S3	AUGUSTUS	stop_codon	3938875	3938877	.	+	0	transcript_id "Ledus.S3G050700.t1"; gene_id "Ledus.S3G050700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10699.t1 is derived from g11729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17264617	17265521	.	+	.	Ledus.S3G217600
Ledus.S3	AUGUSTUS	transcript	17264617	17265521	.	+	.	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	start_codon	17264617	17264619	.	+	0	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	CDS	17264617	17264652	0.86	+	0	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	exon	17264617	17264652	.	+	.	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	intron	17264653	17264748	.	+	.	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	CDS	17264749	17264788	0.98	+	0	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	exon	17264749	17264788	.	+	.	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	intron	17264789	17264938	.	+	.	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	CDS	17264939	17265007	0.74	+	2	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	exon	17264939	17265007	.	+	.	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	intron	17265008	17265148	.	+	.	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	CDS	17265149	17265342	0.9	+	2	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	exon	17265149	17265342	.	+	.	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	intron	17265343	17265434	.	+	.	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	CDS	17265435	17265521	0.83	+	0	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	exon	17265435	17265521	.	+	.	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
Ledus.S3	AUGUSTUS	stop_codon	17265522	17265524	.	+	0	transcript_id "Ledus.S3G217600.t1"; gene_id "Ledus.S3G217600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12595.t1 is derived from g6217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13032614	13034365	.	+	.	Ledus.S4G175100
Ledus.S4	AUGUSTUS	transcript	13032614	13034365	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	start_codon	13032614	13032616	.	+	0	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	CDS	13032614	13032841	0.76	+	0	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	exon	13032614	13032841	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	intron	13032842	13032947	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	CDS	13032948	13033341	0.97	+	0	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	exon	13032948	13033341	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	intron	13033342	13033454	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	CDS	13033455	13033492	1	+	2	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	exon	13033455	13033492	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	intron	13033493	13033581	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	CDS	13033582	13033626	1	+	0	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	exon	13033582	13033626	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	intron	13033627	13033723	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	CDS	13033724	13033848	1	+	0	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	exon	13033724	13033848	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	intron	13033849	13034031	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	CDS	13034032	13034140	1	+	1	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	exon	13034032	13034140	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	intron	13034141	13034226	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	CDS	13034227	13034250	0.66	+	0	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	exon	13034227	13034250	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	intron	13034251	13034335	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	CDS	13034336	13034365	0.48	+	0	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	exon	13034336	13034365	.	+	.	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
Ledus.S4	AUGUSTUS	stop_codon	13034366	13034368	.	+	0	transcript_id "Ledus.S4G175100.t1"; gene_id "Ledus.S4G175100"
# This transcript jg674.t2 is derived from g7535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg674.t3 is derived from g7535.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg675.t1 is derived from g7536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4043921	4050001	.	+	.	Ledus.S2G055700
Ledus.S2	AUGUSTUS	transcript	4043921	4050001	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	start_codon	4043921	4043923	.	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4043921	4044499	0.75	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4043921	4044499	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4044500	4044613	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4044614	4044856	1	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4044614	4044856	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4044857	4044977	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4044978	4045364	1	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4044978	4045364	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4045365	4045492	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4045493	4045975	0.9	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4045493	4045975	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4045976	4046132	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4046133	4046272	0.85	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4046133	4046272	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4046273	4046495	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4046496	4046515	0.91	+	1	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4046496	4046515	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4046516	4046637	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4046638	4046763	0.49	+	2	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4046638	4046763	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4046764	4046844	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4046845	4047019	0.58	+	2	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4046845	4047019	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4047020	4047092	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4047093	4047155	1	+	1	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4047093	4047155	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4047156	4047233	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4047234	4047363	1	+	1	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4047234	4047363	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4047364	4047443	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4047444	4047531	1	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4047444	4047531	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4047532	4047600	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4047601	4047743	1	+	2	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4047601	4047743	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4047744	4047806	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4047807	4047894	1	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4047807	4047894	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4047895	4047970	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4047971	4048083	1	+	2	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4047971	4048083	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4048084	4048164	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4048165	4048357	1	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4048165	4048357	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4048358	4048432	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4048433	4048536	1	+	2	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4048433	4048536	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4048537	4048622	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4048623	4048730	1	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4048623	4048730	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4048731	4048866	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4048867	4049037	0.99	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4048867	4049037	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4049038	4049147	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4049148	4049293	0.99	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4049148	4049293	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4049294	4049382	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4049383	4049554	1	+	1	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4049383	4049554	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4049555	4049639	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4049640	4049754	0.85	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4049640	4049754	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	intron	4049755	4049939	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	CDS	4049940	4050001	0.85	+	2	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	exon	4049940	4050001	.	+	.	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
Ledus.S2	AUGUSTUS	stop_codon	4050002	4050004	.	+	0	transcript_id "Ledus.S2G055700.t1"; gene_id "Ledus.S2G055700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12166.t1 is derived from g5785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10069667	10070606	.	+	.	Ledus.S4G132200
Ledus.S4	AUGUSTUS	transcript	10069667	10070606	.	+	.	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	start_codon	10069667	10069669	.	+	0	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	CDS	10069667	10069744	1	+	0	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	exon	10069667	10069744	.	+	.	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	intron	10069745	10069833	.	+	.	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	CDS	10069834	10069924	1	+	0	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	exon	10069834	10069924	.	+	.	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	intron	10069925	10070014	.	+	.	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	CDS	10070015	10070147	1	+	2	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	exon	10070015	10070147	.	+	.	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	intron	10070148	10070234	.	+	.	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	CDS	10070235	10070304	1	+	1	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	exon	10070235	10070304	.	+	.	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	intron	10070305	10070379	.	+	.	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	CDS	10070380	10070440	1	+	0	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	exon	10070380	10070440	.	+	.	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	intron	10070441	10070517	.	+	.	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	CDS	10070518	10070606	0.97	+	2	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	exon	10070518	10070606	.	+	.	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
Ledus.S4	AUGUSTUS	stop_codon	10070607	10070609	.	+	0	transcript_id "Ledus.S4G132200.t1"; gene_id "Ledus.S4G132200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9824.t1 is derived from g10854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10261514	10262175	.	-	.	Ledus.S3G130100
Ledus.S3	AUGUSTUS	transcript	10261514	10262175	.	-	.	transcript_id "Ledus.S3G130100.t1"; gene_id "Ledus.S3G130100"
Ledus.S3	AUGUSTUS	stop_codon	10261511	10261513	.	-	0	transcript_id "Ledus.S3G130100.t1"; gene_id "Ledus.S3G130100"
Ledus.S3	AUGUSTUS	CDS	10261514	10261848	0.34	-	2	transcript_id "Ledus.S3G130100.t1"; gene_id "Ledus.S3G130100"
Ledus.S3	AUGUSTUS	exon	10261514	10261848	.	-	.	transcript_id "Ledus.S3G130100.t1"; gene_id "Ledus.S3G130100"
Ledus.S3	AUGUSTUS	intron	10261849	10262099	.	-	.	transcript_id "Ledus.S3G130100.t1"; gene_id "Ledus.S3G130100"
Ledus.S3	AUGUSTUS	CDS	10262100	10262175	0.92	-	0	transcript_id "Ledus.S3G130100.t1"; gene_id "Ledus.S3G130100"
Ledus.S3	AUGUSTUS	exon	10262100	10262175	.	-	.	transcript_id "Ledus.S3G130100.t1"; gene_id "Ledus.S3G130100"
Ledus.S3	AUGUSTUS	start_codon	10262173	10262175	.	-	0	transcript_id "Ledus.S3G130100.t1"; gene_id "Ledus.S3G130100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2785.t1 is derived from g219.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3701017	3702727	.	-	.	Ledus.S1G020600
Ledus.S1	AUGUSTUS	transcript	3701017	3702727	.	-	.	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	stop_codon	3701014	3701016	.	-	0	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	CDS	3701017	3701189	0.54	-	2	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	exon	3701017	3701189	.	-	.	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	intron	3701190	3701332	.	-	.	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	CDS	3701333	3701603	1	-	0	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	exon	3701333	3701603	.	-	.	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	intron	3701604	3701837	.	-	.	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	CDS	3701838	3702186	1	-	1	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	exon	3701838	3702186	.	-	.	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	intron	3702187	3702278	.	-	.	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	CDS	3702279	3702727	1	-	0	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	exon	3702279	3702727	.	-	.	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
Ledus.S1	AUGUSTUS	start_codon	3702725	3702727	.	-	0	transcript_id "Ledus.S1G020600.t1"; gene_id "Ledus.S1G020600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12499.t1 is derived from g6120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12390122	12390885	.	+	.	Ledus.S4G165500
Ledus.S4	AUGUSTUS	transcript	12390122	12390885	.	+	.	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	start_codon	12390122	12390124	.	+	0	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	CDS	12390122	12390279	0.55	+	0	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	exon	12390122	12390279	.	+	.	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	intron	12390280	12390394	.	+	.	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	CDS	12390395	12390521	1	+	1	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	exon	12390395	12390521	.	+	.	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	intron	12390522	12390598	.	+	.	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	CDS	12390599	12390667	1	+	0	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	exon	12390599	12390667	.	+	.	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	intron	12390668	12390756	.	+	.	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	CDS	12390757	12390885	1	+	0	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	exon	12390757	12390885	.	+	.	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
Ledus.S4	AUGUSTUS	stop_codon	12390967	12390969	.	+	0	transcript_id "Ledus.S4G165500.t1"; gene_id "Ledus.S4G165500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11486.t1 is derived from g5104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4883393	4885143	.	+	.	Ledus.S4G064200
Ledus.S4	AUGUSTUS	transcript	4883393	4885143	.	+	.	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	start_codon	4883393	4883395	.	+	0	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	CDS	4883393	4883590	0.91	+	0	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	exon	4883393	4883590	.	+	.	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	intron	4883591	4883666	.	+	.	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	CDS	4883667	4883916	1	+	0	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	exon	4883667	4883916	.	+	.	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	intron	4883917	4884018	.	+	.	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	CDS	4884019	4885030	0.88	+	2	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	exon	4884019	4885030	.	+	.	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	intron	4885031	4885124	.	+	.	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	CDS	4885125	4885143	0.9	+	1	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	exon	4885125	4885143	.	+	.	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
Ledus.S4	AUGUSTUS	stop_codon	4885144	4885146	.	+	0	transcript_id "Ledus.S4G064200.t1"; gene_id "Ledus.S4G064200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11664.t1 is derived from g5283.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5813020	5813724	.	-	.	Ledus.S4G082000
Ledus.S4	AUGUSTUS	transcript	5813020	5813724	.	-	.	transcript_id "Ledus.S4G082000.t1"; gene_id "Ledus.S4G082000"
Ledus.S4	AUGUSTUS	stop_codon	5813017	5813019	.	-	0	transcript_id "Ledus.S4G082000.t1"; gene_id "Ledus.S4G082000"
Ledus.S4	AUGUSTUS	CDS	5813020	5813499	1	-	0	transcript_id "Ledus.S4G082000.t1"; gene_id "Ledus.S4G082000"
Ledus.S4	AUGUSTUS	exon	5813020	5813499	.	-	.	transcript_id "Ledus.S4G082000.t1"; gene_id "Ledus.S4G082000"
Ledus.S4	AUGUSTUS	intron	5813500	5813589	.	-	.	transcript_id "Ledus.S4G082000.t1"; gene_id "Ledus.S4G082000"
Ledus.S4	AUGUSTUS	CDS	5813590	5813724	0.75	-	0	transcript_id "Ledus.S4G082000.t1"; gene_id "Ledus.S4G082000"
Ledus.S4	AUGUSTUS	exon	5813590	5813724	.	-	.	transcript_id "Ledus.S4G082000.t1"; gene_id "Ledus.S4G082000"
Ledus.S4	AUGUSTUS	start_codon	5813722	5813724	.	-	0	transcript_id "Ledus.S4G082000.t1"; gene_id "Ledus.S4G082000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12406.t1 is derived from g6027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11766380	11767018	.	+	.	Ledus.S4G156200
Ledus.S4	AUGUSTUS	transcript	11766380	11767018	.	+	.	transcript_id "Ledus.S4G156200.t1"; gene_id "Ledus.S4G156200"
Ledus.S4	AUGUSTUS	start_codon	11766380	11766382	.	+	0	transcript_id "Ledus.S4G156200.t1"; gene_id "Ledus.S4G156200"
Ledus.S4	AUGUSTUS	CDS	11766380	11767018	0.65	+	0	transcript_id "Ledus.S4G156200.t1"; gene_id "Ledus.S4G156200"
Ledus.S4	AUGUSTUS	exon	11766380	11767018	.	+	.	transcript_id "Ledus.S4G156200.t1"; gene_id "Ledus.S4G156200"
Ledus.S4	AUGUSTUS	stop_codon	11767019	11767021	.	+	0	transcript_id "Ledus.S4G156200.t1"; gene_id "Ledus.S4G156200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8479.t1 is derived from g13151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12123702	12124765	.	+	.	Ledus.S5G125700
Ledus.S5	AUGUSTUS	transcript	12123702	12124765	.	+	.	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	start_codon	12123702	12123704	.	+	0	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	CDS	12123702	12123735	0.92	+	0	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	exon	12123702	12123735	.	+	.	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	intron	12123736	12123813	.	+	.	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	CDS	12123814	12124128	0.51	+	2	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	exon	12123814	12124128	.	+	.	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	intron	12124129	12124295	.	+	.	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	CDS	12124296	12124364	0.44	+	2	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	exon	12124296	12124364	.	+	.	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	intron	12124365	12124591	.	+	.	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	CDS	12124592	12124643	1	+	2	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	exon	12124592	12124643	.	+	.	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	intron	12124644	12124716	.	+	.	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	CDS	12124717	12124765	1	+	1	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	exon	12124717	12124765	.	+	.	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
Ledus.S5	AUGUSTUS	stop_codon	12124766	12124768	.	+	0	transcript_id "Ledus.S5G125700.t1"; gene_id "Ledus.S5G125700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9024.t1 is derived from g10054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3911974	3912392	.	+	.	Ledus.S3G050100
Ledus.S3	AUGUSTUS	transcript	3911974	3912392	.	+	.	transcript_id "Ledus.S3G050100.t1"; gene_id "Ledus.S3G050100"
Ledus.S3	AUGUSTUS	start_codon	3911974	3911976	.	+	0	transcript_id "Ledus.S3G050100.t1"; gene_id "Ledus.S3G050100"
Ledus.S3	AUGUSTUS	CDS	3911974	3912247	0.55	+	0	transcript_id "Ledus.S3G050100.t1"; gene_id "Ledus.S3G050100"
Ledus.S3	AUGUSTUS	exon	3911974	3912247	.	+	.	transcript_id "Ledus.S3G050100.t1"; gene_id "Ledus.S3G050100"
Ledus.S3	AUGUSTUS	intron	3912248	3912318	.	+	.	transcript_id "Ledus.S3G050100.t1"; gene_id "Ledus.S3G050100"
Ledus.S3	AUGUSTUS	CDS	3912319	3912392	0.83	+	2	transcript_id "Ledus.S3G050100.t1"; gene_id "Ledus.S3G050100"
Ledus.S3	AUGUSTUS	exon	3912319	3912392	.	+	.	transcript_id "Ledus.S3G050100.t1"; gene_id "Ledus.S3G050100"
Ledus.S3	AUGUSTUS	stop_codon	3912393	3912395	.	+	0	transcript_id "Ledus.S3G050100.t1"; gene_id "Ledus.S3G050100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7602.t1 is derived from g12273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4306140	4306823	.	-	.	Ledus.S5G038000
Ledus.S5	AUGUSTUS	transcript	4306140	4306823	.	-	.	transcript_id "Ledus.S5G038000.t1"; gene_id "Ledus.S5G038000"
Ledus.S5	AUGUSTUS	stop_codon	4306137	4306139	.	-	0	transcript_id "Ledus.S5G038000.t1"; gene_id "Ledus.S5G038000"
Ledus.S5	AUGUSTUS	CDS	4306140	4306823	0.91	-	0	transcript_id "Ledus.S5G038000.t1"; gene_id "Ledus.S5G038000"
Ledus.S5	AUGUSTUS	exon	4306140	4306823	.	-	.	transcript_id "Ledus.S5G038000.t1"; gene_id "Ledus.S5G038000"
Ledus.S5	AUGUSTUS	start_codon	4306821	4306823	.	-	0	transcript_id "Ledus.S5G038000.t1"; gene_id "Ledus.S5G038000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12167.t1 is derived from g5786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10070892	10071287	.	-	.	Ledus.S4G132300
Ledus.S4	AUGUSTUS	transcript	10070892	10071287	.	-	.	transcript_id "Ledus.S4G132300.t1"; gene_id "Ledus.S4G132300"
Ledus.S4	AUGUSTUS	stop_codon	10070889	10070891	.	-	0	transcript_id "Ledus.S4G132300.t1"; gene_id "Ledus.S4G132300"
Ledus.S4	AUGUSTUS	CDS	10070892	10070894	1	-	0	transcript_id "Ledus.S4G132300.t1"; gene_id "Ledus.S4G132300"
Ledus.S4	AUGUSTUS	exon	10070892	10070894	.	-	.	transcript_id "Ledus.S4G132300.t1"; gene_id "Ledus.S4G132300"
Ledus.S4	AUGUSTUS	intron	10070895	10070984	.	-	.	transcript_id "Ledus.S4G132300.t1"; gene_id "Ledus.S4G132300"
Ledus.S4	AUGUSTUS	CDS	10070985	10071287	0.84	-	0	transcript_id "Ledus.S4G132300.t1"; gene_id "Ledus.S4G132300"
Ledus.S4	AUGUSTUS	exon	10070985	10071287	.	-	.	transcript_id "Ledus.S4G132300.t1"; gene_id "Ledus.S4G132300"
Ledus.S4	AUGUSTUS	start_codon	10071285	10071287	.	-	0	transcript_id "Ledus.S4G132300.t1"; gene_id "Ledus.S4G132300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5800.t1 is derived from g3242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26976524	26977184	.	+	.	Ledus.S1G322100
Ledus.S1	AUGUSTUS	transcript	26976524	26977184	.	+	.	transcript_id "Ledus.S1G322100.t1"; gene_id "Ledus.S1G322100"
Ledus.S1	AUGUSTUS	start_codon	26976524	26976526	.	+	0	transcript_id "Ledus.S1G322100.t1"; gene_id "Ledus.S1G322100"
Ledus.S1	AUGUSTUS	CDS	26976524	26976563	0.67	+	0	transcript_id "Ledus.S1G322100.t1"; gene_id "Ledus.S1G322100"
Ledus.S1	AUGUSTUS	exon	26976524	26976563	.	+	.	transcript_id "Ledus.S1G322100.t1"; gene_id "Ledus.S1G322100"
Ledus.S1	AUGUSTUS	intron	26976564	26976651	.	+	.	transcript_id "Ledus.S1G322100.t1"; gene_id "Ledus.S1G322100"
Ledus.S1	AUGUSTUS	CDS	26976652	26976794	1	+	2	transcript_id "Ledus.S1G322100.t1"; gene_id "Ledus.S1G322100"
Ledus.S1	AUGUSTUS	exon	26976652	26976794	.	+	.	transcript_id "Ledus.S1G322100.t1"; gene_id "Ledus.S1G322100"
Ledus.S1	AUGUSTUS	intron	26976795	26976890	.	+	.	transcript_id "Ledus.S1G322100.t1"; gene_id "Ledus.S1G322100"
Ledus.S1	AUGUSTUS	CDS	26976891	26977184	0.34	+	0	transcript_id "Ledus.S1G322100.t1"; gene_id "Ledus.S1G322100"
Ledus.S1	AUGUSTUS	exon	26976891	26977184	.	+	.	transcript_id "Ledus.S1G322100.t1"; gene_id "Ledus.S1G322100"
Ledus.S1	AUGUSTUS	stop_codon	26977185	26977187	.	+	0	transcript_id "Ledus.S1G322100.t1"; gene_id "Ledus.S1G322100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg673.t1 is derived from g7534.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4037191	4037571	.	+	.	Ledus.S2G055500
Ledus.S2	AUGUSTUS	transcript	4037191	4037571	.	+	.	transcript_id "Ledus.S2G055500.t1"; gene_id "Ledus.S2G055500"
Ledus.S2	AUGUSTUS	start_codon	4037191	4037193	.	+	0	transcript_id "Ledus.S2G055500.t1"; gene_id "Ledus.S2G055500"
Ledus.S2	AUGUSTUS	CDS	4037191	4037571	0.68	+	0	transcript_id "Ledus.S2G055500.t1"; gene_id "Ledus.S2G055500"
Ledus.S2	AUGUSTUS	exon	4037191	4037571	.	+	.	transcript_id "Ledus.S2G055500.t1"; gene_id "Ledus.S2G055500"
Ledus.S2	AUGUSTUS	stop_codon	4037572	4037574	.	+	0	transcript_id "Ledus.S2G055500.t1"; gene_id "Ledus.S2G055500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6052.t1 is derived from g3495.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28718674	28728670	.	-	.	Ledus.S1G347300
Ledus.S1	AUGUSTUS	transcript	28718674	28728670	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	stop_codon	28718671	28718673	.	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28718674	28718997	0.97	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28718674	28718997	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28718998	28719102	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28719103	28719357	1	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28719103	28719357	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28719358	28719439	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28719440	28719611	1	-	1	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28719440	28719611	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28719612	28719694	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28719695	28719922	1	-	1	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28719695	28719922	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28719923	28720007	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28720008	28720141	1	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28720008	28720141	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28720142	28720249	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28720250	28720333	0.99	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28720250	28720333	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28720334	28720436	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28720437	28720727	1	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28720437	28720727	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28720728	28720831	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28720832	28721164	0.99	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28720832	28721164	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28721165	28721274	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28721275	28721441	1	-	2	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28721275	28721441	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28721442	28721595	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28721596	28721727	1	-	2	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28721596	28721727	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28721728	28721817	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28721818	28721974	0.7	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28721818	28721974	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28721975	28722088	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28722089	28722192	1	-	2	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28722089	28722192	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28722193	28722280	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28722281	28722441	1	-	1	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28722281	28722441	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28722442	28722544	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28722545	28722861	0.99	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28722545	28722861	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28722862	28722996	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28722997	28723278	1	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28722997	28723278	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28723279	28723370	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28723371	28723672	1	-	2	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28723371	28723672	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28723673	28723776	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28723777	28723867	0.94	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28723777	28723867	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28723868	28723979	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28723980	28724033	0.98	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28723980	28724033	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28724034	28724138	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28724139	28724215	1	-	2	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28724139	28724215	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28724216	28724346	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28724347	28724506	1	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28724347	28724506	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28724507	28724616	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28724617	28724701	0.99	-	1	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28724617	28724701	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28724702	28724796	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28724797	28724885	1	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28724797	28724885	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28724886	28725061	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28725062	28725182	1	-	1	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28725062	28725182	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28725183	28725273	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28725274	28725662	0.91	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28725274	28725662	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28725663	28725752	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28725753	28725833	0.54	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28725753	28725833	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28725834	28726300	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28726301	28726392	0.57	-	2	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28726301	28726392	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28726393	28726524	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28726525	28726560	0.6	-	2	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28726525	28726560	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28726561	28726633	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28726634	28726780	0.77	-	2	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28726634	28726780	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28726781	28726876	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28726877	28727019	1	-	1	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28726877	28727019	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28727020	28727101	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28727102	28727312	1	-	2	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28727102	28727312	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28727313	28727396	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28727397	28727534	1	-	2	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28727397	28727534	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28727535	28727614	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28727615	28727861	1	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28727615	28727861	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28727862	28727944	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28727945	28728281	1	-	1	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28727945	28728281	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28728282	28728366	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28728367	28728455	1	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28728367	28728455	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	intron	28728456	28728538	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	CDS	28728539	28728670	0.69	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	exon	28728539	28728670	.	-	.	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
Ledus.S1	AUGUSTUS	start_codon	28728668	28728670	.	-	0	transcript_id "Ledus.S1G347300.t1"; gene_id "Ledus.S1G347300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg397.t1 is derived from g7258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2223533	2224270	.	+	.	Ledus.S2G027900
Ledus.S2	AUGUSTUS	transcript	2223533	2224270	.	+	.	transcript_id "Ledus.S2G027900.t1"; gene_id "Ledus.S2G027900"
Ledus.S2	AUGUSTUS	start_codon	2223533	2223535	.	+	0	transcript_id "Ledus.S2G027900.t1"; gene_id "Ledus.S2G027900"
Ledus.S2	AUGUSTUS	CDS	2223533	2223891	0.79	+	0	transcript_id "Ledus.S2G027900.t1"; gene_id "Ledus.S2G027900"
Ledus.S2	AUGUSTUS	exon	2223533	2223891	.	+	.	transcript_id "Ledus.S2G027900.t1"; gene_id "Ledus.S2G027900"
Ledus.S2	AUGUSTUS	intron	2223892	2223989	.	+	.	transcript_id "Ledus.S2G027900.t1"; gene_id "Ledus.S2G027900"
Ledus.S2	AUGUSTUS	CDS	2223990	2224071	1	+	1	transcript_id "Ledus.S2G027900.t1"; gene_id "Ledus.S2G027900"
Ledus.S2	AUGUSTUS	exon	2223990	2224071	.	+	.	transcript_id "Ledus.S2G027900.t1"; gene_id "Ledus.S2G027900"
Ledus.S2	AUGUSTUS	intron	2224072	2224159	.	+	.	transcript_id "Ledus.S2G027900.t1"; gene_id "Ledus.S2G027900"
Ledus.S2	AUGUSTUS	CDS	2224160	2224270	0.79	+	0	transcript_id "Ledus.S2G027900.t1"; gene_id "Ledus.S2G027900"
Ledus.S2	AUGUSTUS	exon	2224160	2224270	.	+	.	transcript_id "Ledus.S2G027900.t1"; gene_id "Ledus.S2G027900"
Ledus.S2	AUGUSTUS	stop_codon	2224271	2224273	.	+	0	transcript_id "Ledus.S2G027900.t1"; gene_id "Ledus.S2G027900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12269.t1 is derived from g5889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10715334	10719098	.	-	.	Ledus.S4G142500
Ledus.S4	AUGUSTUS	transcript	10715334	10719098	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	stop_codon	10715331	10715333	.	-	0	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10715334	10715520	0.83	-	1	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10715334	10715520	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10715521	10715608	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10715609	10715905	1	-	1	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10715609	10715905	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10715906	10716042	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10716043	10716227	0.92	-	0	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10716043	10716227	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10716228	10716323	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10716324	10716608	0.94	-	0	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10716324	10716608	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10716609	10716732	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10716733	10716841	1	-	1	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10716733	10716841	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10716842	10716934	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10716935	10717573	1	-	1	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10716935	10717573	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10717574	10717704	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10717705	10717811	0.72	-	0	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10717705	10717811	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10717812	10717912	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10717913	10718101	1	-	0	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10717913	10718101	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10718102	10718274	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10718275	10718388	1	-	0	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10718275	10718388	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10718389	10718462	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10718463	10718559	1	-	1	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10718463	10718559	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10718560	10718649	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10718650	10719098	0.91	-	0	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10718650	10719098	.	-	.	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	start_codon	10719096	10719098	.	-	0	transcript_id "Ledus.S4G142500.t1"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	transcript	10715334	10719098	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	stop_codon	10715331	10715333	.	-	0	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10715334	10715520	0.82	-	1	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10715334	10715520	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10715521	10715608	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10715609	10715905	1	-	1	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10715609	10715905	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10715906	10716042	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10716043	10716227	0.91	-	0	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10716043	10716227	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10716228	10716323	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10716324	10716608	0.93	-	0	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10716324	10716608	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10716609	10716732	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10716733	10716841	1	-	1	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10716733	10716841	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10716842	10716934	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10716935	10717573	0.98	-	1	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10716935	10717573	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10717574	10717704	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10717705	10717870	0.49	-	2	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10717705	10717870	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10717871	10718071	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10718072	10718101	0.61	-	2	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10718072	10718101	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10718102	10718285	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10718286	10718388	0.71	-	0	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10718286	10718388	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10718389	10718462	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10718463	10718559	1	-	1	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10718463	10718559	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	intron	10718560	10718649	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	CDS	10718650	10719098	0.85	-	0	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	exon	10718650	10719098	.	-	.	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
Ledus.S4	AUGUSTUS	start_codon	10719096	10719098	.	-	0	transcript_id "Ledus.S4G142500.t2"; gene_id "Ledus.S4G142500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2687.t1 is derived from g120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1791993	1794500	.	-	.	Ledus.S1G010800
Ledus.S1	AUGUSTUS	transcript	1791993	1794500	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	stop_codon	1791990	1791992	.	-	0	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	CDS	1791993	1792568	0.76	-	0	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	exon	1791993	1792568	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	intron	1792569	1792696	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	CDS	1792697	1792753	1	-	0	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	exon	1792697	1792753	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	intron	1792754	1792850	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	CDS	1792851	1792947	1	-	1	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	exon	1792851	1792947	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	intron	1792948	1793090	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	CDS	1793091	1793182	1	-	0	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	exon	1793091	1793182	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	intron	1793183	1793273	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	CDS	1793274	1793319	1	-	1	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	exon	1793274	1793319	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	intron	1793320	1793490	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	CDS	1793491	1793645	1	-	0	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	exon	1793491	1793645	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	intron	1793646	1793761	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	CDS	1793762	1793990	1	-	1	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	exon	1793762	1793990	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	intron	1793991	1794118	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	CDS	1794119	1794195	1	-	0	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	exon	1794119	1794195	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	intron	1794196	1794335	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	CDS	1794336	1794500	0.32	-	0	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	exon	1794336	1794500	.	-	.	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
Ledus.S1	AUGUSTUS	start_codon	1794498	1794500	.	-	0	transcript_id "Ledus.S1G010800.t1"; gene_id "Ledus.S1G010800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4275.t1 is derived from g1711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15907847	15911213	.	+	.	Ledus.S1G169600
Ledus.S1	AUGUSTUS	transcript	15907847	15911213	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	start_codon	15907847	15907849	.	+	0	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	CDS	15907847	15908565	0.25	+	0	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	exon	15907847	15908565	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	intron	15908566	15909034	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	CDS	15909035	15909200	1	+	1	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	exon	15909035	15909200	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	intron	15909201	15909390	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	CDS	15909391	15909514	1	+	0	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	exon	15909391	15909514	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	intron	15909515	15909704	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	CDS	15909705	15909817	1	+	2	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	exon	15909705	15909817	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	intron	15909818	15909904	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	CDS	15909905	15910273	0.99	+	0	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	exon	15909905	15910273	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	intron	15910274	15910393	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	CDS	15910394	15910651	0.99	+	0	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	exon	15910394	15910651	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	intron	15910652	15910757	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	CDS	15910758	15910847	1	+	0	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	exon	15910758	15910847	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	intron	15910848	15910940	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	CDS	15910941	15911213	0.97	+	0	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	exon	15910941	15911213	.	+	.	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
Ledus.S1	AUGUSTUS	stop_codon	15911214	15911216	.	+	0	transcript_id "Ledus.S1G169600.t1"; gene_id "Ledus.S1G169600"
# This transcript jg7137.t2 is derived from g6668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7138.t1 is derived from g6669.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1724842	1725870	.	+	.	Ledus.C7G019900
Ledus.C7	AUGUSTUS	transcript	1724842	1725870	.	+	.	transcript_id "Ledus.C7G019900.t1"; gene_id "Ledus.C7G019900"
Ledus.C7	AUGUSTUS	start_codon	1724842	1724844	.	+	0	transcript_id "Ledus.C7G019900.t1"; gene_id "Ledus.C7G019900"
Ledus.C7	AUGUSTUS	CDS	1724842	1725024	0.61	+	0	transcript_id "Ledus.C7G019900.t1"; gene_id "Ledus.C7G019900"
Ledus.C7	AUGUSTUS	exon	1724842	1725024	.	+	.	transcript_id "Ledus.C7G019900.t1"; gene_id "Ledus.C7G019900"
Ledus.C7	AUGUSTUS	intron	1725025	1725651	.	+	.	transcript_id "Ledus.C7G019900.t1"; gene_id "Ledus.C7G019900"
Ledus.C7	AUGUSTUS	CDS	1725652	1725683	0.99	+	0	transcript_id "Ledus.C7G019900.t1"; gene_id "Ledus.C7G019900"
Ledus.C7	AUGUSTUS	exon	1725652	1725683	.	+	.	transcript_id "Ledus.C7G019900.t1"; gene_id "Ledus.C7G019900"
Ledus.C7	AUGUSTUS	intron	1725684	1725821	.	+	.	transcript_id "Ledus.C7G019900.t1"; gene_id "Ledus.C7G019900"
Ledus.C7	AUGUSTUS	CDS	1725822	1725870	0.9	+	1	transcript_id "Ledus.C7G019900.t1"; gene_id "Ledus.C7G019900"
Ledus.C7	AUGUSTUS	exon	1725822	1725870	.	+	.	transcript_id "Ledus.C7G019900.t1"; gene_id "Ledus.C7G019900"
Ledus.C7	AUGUSTUS	stop_codon	1725871	1725873	.	+	0	transcript_id "Ledus.C7G019900.t1"; gene_id "Ledus.C7G019900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7984.t1 is derived from g12655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8340505	8341122	.	+	.	Ledus.S5G076200
Ledus.S5	AUGUSTUS	transcript	8340505	8341122	.	+	.	transcript_id "Ledus.S5G076200.t1"; gene_id "Ledus.S5G076200"
Ledus.S5	AUGUSTUS	start_codon	8340505	8340507	.	+	0	transcript_id "Ledus.S5G076200.t1"; gene_id "Ledus.S5G076200"
Ledus.S5	AUGUSTUS	CDS	8340505	8341122	0.95	+	0	transcript_id "Ledus.S5G076200.t1"; gene_id "Ledus.S5G076200"
Ledus.S5	AUGUSTUS	exon	8340505	8341122	.	+	.	transcript_id "Ledus.S5G076200.t1"; gene_id "Ledus.S5G076200"
Ledus.S5	AUGUSTUS	stop_codon	8341123	8341125	.	+	0	transcript_id "Ledus.S5G076200.t1"; gene_id "Ledus.S5G076200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3599.t1 is derived from g1035.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9936490	9943226	.	-	.	Ledus.S1G102000
Ledus.S1	AUGUSTUS	transcript	9939398	9943226	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	stop_codon	9939395	9939397	.	-	0	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9939398	9939413	0.86	-	1	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9939398	9939413	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9939414	9939554	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9939555	9939693	0.86	-	2	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9939555	9939693	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9939694	9939832	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9939833	9939911	1	-	0	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9939833	9939911	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9939912	9940029	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9940030	9940122	0.9	-	0	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9940030	9940122	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9940123	9940234	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9940235	9940429	0.93	-	0	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9940235	9940429	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9940430	9940522	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9940523	9940846	1	-	0	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9940523	9940846	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9940847	9941115	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9941116	9941542	1	-	1	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9941116	9941542	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9941543	9941669	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9941670	9941748	0.99	-	2	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9941670	9941748	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9941749	9941863	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9941864	9941967	0.84	-	1	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9941864	9941967	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9941968	9942177	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9942178	9942269	1	-	0	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9942178	9942269	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9942270	9942415	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9942416	9942469	1	-	0	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9942416	9942469	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9942470	9942576	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9942577	9942661	1	-	1	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9942577	9942661	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9942662	9942787	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9942788	9942936	1	-	0	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9942788	9942936	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9942937	9943196	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9943197	9943226	0.96	-	0	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9943197	9943226	.	-	.	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	start_codon	9943224	9943226	.	-	0	transcript_id "Ledus.S1G102000.t1"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	transcript	9936490	9943226	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	stop_codon	9936487	9936489	.	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9936490	9936594	0.73	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9936490	9936594	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9936595	9936682	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9936683	9936745	1	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9936683	9936745	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9936746	9936840	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9936841	9937052	1	-	2	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9936841	9937052	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9937053	9937219	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9937220	9937562	0.96	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9937220	9937562	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9937563	9937744	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9937745	9937859	1	-	1	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9937745	9937859	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9937860	9937945	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9937946	9938016	1	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9937946	9938016	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9938017	9938165	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9938166	9938289	1	-	1	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9938166	9938289	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9938290	9938475	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9938476	9938603	1	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9938476	9938603	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9938604	9938694	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9938695	9939020	0.82	-	2	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9938695	9939020	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9939021	9939130	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9939131	9939413	0.72	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9939131	9939413	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9939414	9939565	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9939566	9939693	1	-	2	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9939566	9939693	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9939694	9939832	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9939833	9939911	1	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9939833	9939911	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9939912	9940029	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9940030	9940122	0.86	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9940030	9940122	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9940123	9940234	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9940235	9940429	0.88	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9940235	9940429	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9940430	9940522	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9940523	9940846	1	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9940523	9940846	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9940847	9941115	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9941116	9941542	1	-	1	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9941116	9941542	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9941543	9941669	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9941670	9941748	1	-	2	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9941670	9941748	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9941749	9941863	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9941864	9941967	0.86	-	1	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9941864	9941967	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9941968	9942177	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9942178	9942269	1	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9942178	9942269	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9942270	9942415	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9942416	9942469	1	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9942416	9942469	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9942470	9942576	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9942577	9942661	1	-	1	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9942577	9942661	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9942662	9942787	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9942788	9942936	1	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9942788	9942936	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	intron	9942937	9943196	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	CDS	9943197	9943226	0.94	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	exon	9943197	9943226	.	-	.	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
Ledus.S1	AUGUSTUS	start_codon	9943224	9943226	.	-	0	transcript_id "Ledus.S1G102000.t2"; gene_id "Ledus.S1G102000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2838.t1 is derived from g272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4111888	4112505	.	-	.	Ledus.S1G025900
Ledus.S1	AUGUSTUS	transcript	4111888	4112505	.	-	.	transcript_id "Ledus.S1G025900.t1"; gene_id "Ledus.S1G025900"
Ledus.S1	AUGUSTUS	stop_codon	4111885	4111887	.	-	0	transcript_id "Ledus.S1G025900.t1"; gene_id "Ledus.S1G025900"
Ledus.S1	AUGUSTUS	CDS	4111888	4112217	0.39	-	0	transcript_id "Ledus.S1G025900.t1"; gene_id "Ledus.S1G025900"
Ledus.S1	AUGUSTUS	exon	4111888	4112217	.	-	.	transcript_id "Ledus.S1G025900.t1"; gene_id "Ledus.S1G025900"
Ledus.S1	AUGUSTUS	intron	4112218	4112307	.	-	.	transcript_id "Ledus.S1G025900.t1"; gene_id "Ledus.S1G025900"
Ledus.S1	AUGUSTUS	CDS	4112308	4112505	0.37	-	0	transcript_id "Ledus.S1G025900.t1"; gene_id "Ledus.S1G025900"
Ledus.S1	AUGUSTUS	exon	4112308	4112505	.	-	.	transcript_id "Ledus.S1G025900.t1"; gene_id "Ledus.S1G025900"
Ledus.S1	AUGUSTUS	start_codon	4112503	4112505	.	-	0	transcript_id "Ledus.S1G025900.t1"; gene_id "Ledus.S1G025900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6801.t1 is derived from g4245.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34315227	34317404	.	-	.	Ledus.S1G422200
Ledus.S1	AUGUSTUS	transcript	34315450	34317404	.	-	.	transcript_id "Ledus.S1G422200.t1"; gene_id "Ledus.S1G422200"
Ledus.S1	AUGUSTUS	stop_codon	34315447	34315449	.	-	0	transcript_id "Ledus.S1G422200.t1"; gene_id "Ledus.S1G422200"
Ledus.S1	AUGUSTUS	CDS	34315450	34315450	0.64	-	1	transcript_id "Ledus.S1G422200.t1"; gene_id "Ledus.S1G422200"
Ledus.S1	AUGUSTUS	exon	34315450	34315450	.	-	.	transcript_id "Ledus.S1G422200.t1"; gene_id "Ledus.S1G422200"
Ledus.S1	AUGUSTUS	intron	34315451	34315539	.	-	.	transcript_id "Ledus.S1G422200.t1"; gene_id "Ledus.S1G422200"
Ledus.S1	AUGUSTUS	CDS	34315540	34317404	0.32	-	0	transcript_id "Ledus.S1G422200.t1"; gene_id "Ledus.S1G422200"
Ledus.S1	AUGUSTUS	exon	34315540	34317404	.	-	.	transcript_id "Ledus.S1G422200.t1"; gene_id "Ledus.S1G422200"
Ledus.S1	AUGUSTUS	start_codon	34317402	34317404	.	-	0	transcript_id "Ledus.S1G422200.t1"; gene_id "Ledus.S1G422200"
Ledus.S1	AUGUSTUS	transcript	34315227	34317404	.	-	.	transcript_id "Ledus.S1G422200.t2"; gene_id "Ledus.S1G422200"
Ledus.S1	AUGUSTUS	stop_codon	34315224	34315226	.	-	0	transcript_id "Ledus.S1G422200.t2"; gene_id "Ledus.S1G422200"
Ledus.S1	AUGUSTUS	CDS	34315227	34317404	0.96	-	0	transcript_id "Ledus.S1G422200.t2"; gene_id "Ledus.S1G422200"
Ledus.S1	AUGUSTUS	exon	34315227	34317404	.	-	.	transcript_id "Ledus.S1G422200.t2"; gene_id "Ledus.S1G422200"
Ledus.S1	AUGUSTUS	start_codon	34317402	34317404	.	-	0	transcript_id "Ledus.S1G422200.t2"; gene_id "Ledus.S1G422200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4977.t1 is derived from g2415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20949687	20952491	.	-	.	Ledus.S1G239800
Ledus.S1	AUGUSTUS	transcript	20949687	20952491	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	stop_codon	20949684	20949686	.	-	0	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20949687	20949868	0.51	-	2	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20949687	20949868	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20949869	20950030	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20950031	20950127	0.41	-	0	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20950031	20950127	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20950128	20950222	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20950223	20950232	0.39	-	1	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20950223	20950232	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20950233	20950369	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20950370	20950383	0.29	-	0	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20950370	20950383	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20950384	20950451	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20950452	20950521	1	-	1	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20950452	20950521	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20950522	20950619	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20950620	20950735	1	-	0	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20950620	20950735	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20950736	20950818	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20950819	20950935	1	-	0	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20950819	20950935	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20950936	20951019	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20951020	20951101	1	-	1	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20951020	20951101	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20951102	20951295	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20951296	20951372	1	-	0	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20951296	20951372	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20951373	20951508	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20951509	20951562	1	-	0	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20951509	20951562	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20951563	20951669	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20951670	20951750	1	-	0	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20951670	20951750	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20951751	20951879	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20951880	20951954	1	-	0	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20951880	20951954	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20951955	20952036	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20952037	20952118	1	-	1	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20952037	20952118	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	intron	20952119	20952207	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	CDS	20952208	20952491	0.96	-	0	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	exon	20952208	20952491	.	-	.	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
Ledus.S1	AUGUSTUS	start_codon	20952489	20952491	.	-	0	transcript_id "Ledus.S1G239800.t1"; gene_id "Ledus.S1G239800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2185.t1 is derived from g9048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15821565	15823450	.	-	.	Ledus.S2G206700
Ledus.S2	AUGUSTUS	transcript	15821565	15823450	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	stop_codon	15821562	15821564	.	-	0	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	CDS	15821565	15821771	0.97	-	0	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	exon	15821565	15821771	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	intron	15821772	15821848	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	CDS	15821849	15821908	1	-	0	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	exon	15821849	15821908	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	intron	15821909	15821987	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	CDS	15821988	15822076	1	-	2	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	exon	15821988	15822076	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	intron	15822077	15822169	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	CDS	15822170	15822291	1	-	1	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	exon	15822170	15822291	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	intron	15822292	15822386	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	CDS	15822387	15822493	1	-	0	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	exon	15822387	15822493	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	intron	15822494	15822589	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	CDS	15822590	15822660	1	-	2	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	exon	15822590	15822660	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	intron	15822661	15822745	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	CDS	15822746	15822839	1	-	0	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	exon	15822746	15822839	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	intron	15822840	15822915	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	CDS	15822916	15823073	1	-	2	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	exon	15822916	15823073	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	intron	15823074	15823168	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	CDS	15823169	15823231	1	-	2	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	exon	15823169	15823231	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	intron	15823232	15823323	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	CDS	15823324	15823450	0.91	-	0	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	exon	15823324	15823450	.	-	.	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
Ledus.S2	AUGUSTUS	start_codon	15823448	15823450	.	-	0	transcript_id "Ledus.S2G206700.t1"; gene_id "Ledus.S2G206700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7214.t1 is derived from g6745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2254804	2255469	.	-	.	Ledus.C7G027500
Ledus.C7	AUGUSTUS	transcript	2254804	2255469	.	-	.	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	stop_codon	2254801	2254803	.	-	0	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	CDS	2254804	2254838	0.99	-	2	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	exon	2254804	2254838	.	-	.	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	intron	2254839	2254928	.	-	.	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	CDS	2254929	2255074	0.94	-	1	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	exon	2254929	2255074	.	-	.	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	intron	2255075	2255241	.	-	.	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	CDS	2255242	2255373	0.98	-	1	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	exon	2255242	2255373	.	-	.	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	intron	2255374	2255461	.	-	.	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	CDS	2255462	2255469	0.77	-	0	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	exon	2255462	2255469	.	-	.	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
Ledus.C7	AUGUSTUS	start_codon	2255467	2255469	.	-	0	transcript_id "Ledus.C7G027500.t1"; gene_id "Ledus.C7G027500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5755.t1 is derived from g3196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26508332	26511226	.	+	.	Ledus.S1G317600
Ledus.S1	AUGUSTUS	transcript	26508332	26511226	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	start_codon	26508332	26508334	.	+	0	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	CDS	26508332	26508455	0.91	+	0	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	exon	26508332	26508455	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	intron	26508456	26508594	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	CDS	26508595	26508801	1	+	2	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	exon	26508595	26508801	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	intron	26508802	26508893	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	CDS	26508894	26509606	0.64	+	2	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	exon	26508894	26509606	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	intron	26509607	26509732	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	CDS	26509733	26509869	0.67	+	0	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	exon	26509733	26509869	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	intron	26509870	26509969	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	CDS	26509970	26510057	0.91	+	1	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	exon	26509970	26510057	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	intron	26510058	26510250	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	CDS	26510251	26510265	0.97	+	0	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	exon	26510251	26510265	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	intron	26510266	26510324	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	CDS	26510325	26510930	0.71	+	0	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	exon	26510325	26510930	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	intron	26510931	26511031	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	CDS	26511032	26511226	0.61	+	0	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	exon	26511032	26511226	.	+	.	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
Ledus.S1	AUGUSTUS	stop_codon	26511227	26511229	.	+	0	transcript_id "Ledus.S1G317600.t1"; gene_id "Ledus.S1G317600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8370.t1 is derived from g13042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11253023	11259956	.	+	.	Ledus.S5G114800
Ledus.S5	AUGUSTUS	transcript	11253023	11259956	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	start_codon	11253023	11253025	.	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11253023	11253073	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11253023	11253073	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11253074	11253713	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11253714	11253792	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11253714	11253792	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11253793	11253973	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11253974	11254056	1	+	2	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11253974	11254056	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11254057	11254149	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11254150	11254299	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11254150	11254299	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11254300	11254424	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11254425	11254540	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11254425	11254540	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11254541	11254676	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11254677	11254782	1	+	1	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11254677	11254782	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11254783	11254919	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11254920	11254991	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11254920	11254991	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11254992	11255159	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11255160	11255275	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11255160	11255275	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11255276	11255365	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11255366	11255501	1	+	1	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11255366	11255501	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11255502	11255699	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11255700	11255777	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11255700	11255777	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11255778	11255985	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11255986	11256039	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11255986	11256039	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11256040	11256136	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11256137	11256207	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11256137	11256207	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11256208	11256288	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11256289	11256343	1	+	1	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11256289	11256343	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11256344	11256435	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11256436	11256531	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11256436	11256531	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11256532	11256695	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11256696	11256824	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11256696	11256824	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11256825	11256991	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11256992	11257074	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11256992	11257074	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11257075	11257178	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11257179	11257409	0.99	+	1	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11257179	11257409	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11257410	11257497	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11257498	11257633	1	+	1	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11257498	11257633	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11257634	11257723	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11257724	11257846	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11257724	11257846	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11257847	11257952	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11257953	11258084	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11257953	11258084	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11258085	11258598	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11258599	11258655	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11258599	11258655	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11258656	11258800	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11258801	11258898	1	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11258801	11258898	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11258899	11259123	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11259124	11259182	1	+	1	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11259124	11259182	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11259183	11259263	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11259264	11259375	1	+	2	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11259264	11259375	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11259376	11259501	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11259502	11259614	1	+	1	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11259502	11259614	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11259615	11259748	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11259749	11259838	1	+	2	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11259749	11259838	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	intron	11259839	11259930	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	CDS	11259931	11259956	1	+	2	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	exon	11259931	11259956	.	+	.	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
Ledus.S5	AUGUSTUS	stop_codon	11259957	11259959	.	+	0	transcript_id "Ledus.S5G114800.t1"; gene_id "Ledus.S5G114800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5091.t1 is derived from g2530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21527121	21527768	.	+	.	Ledus.S1G251200
Ledus.S1	AUGUSTUS	transcript	21527121	21527768	.	+	.	transcript_id "Ledus.S1G251200.t1"; gene_id "Ledus.S1G251200"
Ledus.S1	AUGUSTUS	start_codon	21527121	21527123	.	+	0	transcript_id "Ledus.S1G251200.t1"; gene_id "Ledus.S1G251200"
Ledus.S1	AUGUSTUS	CDS	21527121	21527768	1	+	0	transcript_id "Ledus.S1G251200.t1"; gene_id "Ledus.S1G251200"
Ledus.S1	AUGUSTUS	exon	21527121	21527768	.	+	.	transcript_id "Ledus.S1G251200.t1"; gene_id "Ledus.S1G251200"
Ledus.S1	AUGUSTUS	stop_codon	21527769	21527771	.	+	0	transcript_id "Ledus.S1G251200.t1"; gene_id "Ledus.S1G251200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg699.t1 is derived from g7560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4294556	4297013	.	+	.	Ledus.S2G058100
Ledus.S2	AUGUSTUS	transcript	4294556	4297013	.	+	.	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	start_codon	4294556	4294558	.	+	0	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	CDS	4294556	4295536	0.88	+	0	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	exon	4294556	4295536	.	+	.	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	intron	4295537	4295622	.	+	.	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	CDS	4295623	4296014	0.86	+	0	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	exon	4295623	4296014	.	+	.	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	intron	4296015	4296159	.	+	.	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	CDS	4296160	4296223	1	+	1	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	exon	4296160	4296223	.	+	.	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	intron	4296224	4296332	.	+	.	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	CDS	4296333	4297013	0.99	+	0	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	exon	4296333	4297013	.	+	.	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	stop_codon	4297014	4297016	.	+	0	transcript_id "Ledus.S2G058100.t1"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	transcript	4294556	4297013	.	+	.	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	start_codon	4294556	4294558	.	+	0	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	CDS	4294556	4295536	0.79	+	0	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	exon	4294556	4295536	.	+	.	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	intron	4295537	4295622	.	+	.	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	CDS	4295623	4296014	0.89	+	0	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	exon	4295623	4296014	.	+	.	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	intron	4296015	4296156	.	+	.	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	CDS	4296157	4296223	1	+	1	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	exon	4296157	4296223	.	+	.	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	intron	4296224	4296332	.	+	.	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	CDS	4296333	4297013	1	+	0	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	exon	4296333	4297013	.	+	.	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
Ledus.S2	AUGUSTUS	stop_codon	4297014	4297016	.	+	0	transcript_id "Ledus.S2G058100.t2"; gene_id "Ledus.S2G058100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5500.t1 is derived from g2939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24642494	24643556	.	-	.	Ledus.S1G292100
Ledus.S1	AUGUSTUS	transcript	24642494	24643556	.	-	.	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	stop_codon	24642491	24642493	.	-	0	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	CDS	24642494	24642614	0.86	-	1	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	exon	24642494	24642614	.	-	.	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	intron	24642615	24643046	.	-	.	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	CDS	24643047	24643148	1	-	1	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	exon	24643047	24643148	.	-	.	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	intron	24643149	24643306	.	-	.	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	CDS	24643307	24643361	1	-	2	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	exon	24643307	24643361	.	-	.	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	intron	24643362	24643531	.	-	.	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	CDS	24643532	24643556	1	-	0	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	exon	24643532	24643556	.	-	.	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
Ledus.S1	AUGUSTUS	start_codon	24643554	24643556	.	-	0	transcript_id "Ledus.S1G292100.t1"; gene_id "Ledus.S1G292100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10196.t1 is derived from g11226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13520685	13521207	.	+	.	Ledus.S3G167300
Ledus.S3	AUGUSTUS	transcript	13520685	13521207	.	+	.	transcript_id "Ledus.S3G167300.t1"; gene_id "Ledus.S3G167300"
Ledus.S3	AUGUSTUS	start_codon	13520685	13520687	.	+	0	transcript_id "Ledus.S3G167300.t1"; gene_id "Ledus.S3G167300"
Ledus.S3	AUGUSTUS	CDS	13520685	13521035	0.68	+	0	transcript_id "Ledus.S3G167300.t1"; gene_id "Ledus.S3G167300"
Ledus.S3	AUGUSTUS	exon	13520685	13521035	.	+	.	transcript_id "Ledus.S3G167300.t1"; gene_id "Ledus.S3G167300"
Ledus.S3	AUGUSTUS	intron	13521036	13521180	.	+	.	transcript_id "Ledus.S3G167300.t1"; gene_id "Ledus.S3G167300"
Ledus.S3	AUGUSTUS	CDS	13521181	13521207	0.71	+	0	transcript_id "Ledus.S3G167300.t1"; gene_id "Ledus.S3G167300"
Ledus.S3	AUGUSTUS	exon	13521181	13521207	.	+	.	transcript_id "Ledus.S3G167300.t1"; gene_id "Ledus.S3G167300"
Ledus.S3	AUGUSTUS	stop_codon	13521208	13521210	.	+	0	transcript_id "Ledus.S3G167300.t1"; gene_id "Ledus.S3G167300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg603.t1 is derived from g7464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3589175	3590047	.	-	.	Ledus.S2G048500
Ledus.S2	AUGUSTUS	transcript	3589175	3590047	.	-	.	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	stop_codon	3589172	3589174	.	-	0	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	CDS	3589175	3589358	0.96	-	1	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	exon	3589175	3589358	.	-	.	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	intron	3589359	3589465	.	-	.	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	CDS	3589466	3589602	1	-	0	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	exon	3589466	3589602	.	-	.	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	intron	3589603	3589724	.	-	.	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	CDS	3589725	3589838	1	-	0	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	exon	3589725	3589838	.	-	.	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	intron	3589839	3589966	.	-	.	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	CDS	3589967	3590047	0.69	-	0	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	exon	3589967	3590047	.	-	.	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
Ledus.S2	AUGUSTUS	start_codon	3590045	3590047	.	-	0	transcript_id "Ledus.S2G048500.t1"; gene_id "Ledus.S2G048500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5476.t1 is derived from g2915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24477168	24479018	.	-	.	Ledus.S1G289700
Ledus.S1	AUGUSTUS	transcript	24477168	24479018	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	stop_codon	24477165	24477167	.	-	0	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	CDS	24477168	24477389	1	-	0	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	exon	24477168	24477389	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	intron	24477390	24477493	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	CDS	24477494	24477655	0.96	-	0	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	exon	24477494	24477655	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	intron	24477656	24477772	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	CDS	24477773	24477836	1	-	1	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	exon	24477773	24477836	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	intron	24477837	24477926	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	CDS	24477927	24478030	1	-	0	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	exon	24477927	24478030	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	intron	24478031	24478175	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	CDS	24478176	24478301	1	-	0	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	exon	24478176	24478301	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	intron	24478302	24478383	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	CDS	24478384	24478778	1	-	2	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	exon	24478384	24478778	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	intron	24478779	24478927	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	CDS	24478928	24479018	0.76	-	0	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	exon	24478928	24479018	.	-	.	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
Ledus.S1	AUGUSTUS	start_codon	24479016	24479018	.	-	0	transcript_id "Ledus.S1G289700.t1"; gene_id "Ledus.S1G289700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5823.t1 is derived from g3265.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27101476	27104695	.	+	.	Ledus.S1G324400
Ledus.S1	AUGUSTUS	transcript	27101476	27104695	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	start_codon	27101476	27101478	.	+	0	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27101476	27101596	0.5	+	0	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27101476	27101596	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27101597	27101746	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27101747	27101859	1	+	2	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27101747	27101859	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27101860	27101954	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27101955	27102072	1	+	0	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27101955	27102072	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27102073	27102204	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27102205	27102285	1	+	2	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27102205	27102285	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27102286	27102571	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27102572	27102791	1	+	2	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27102572	27102791	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27102792	27102962	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27102963	27103026	1	+	1	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27102963	27103026	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27103027	27103126	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27103127	27103219	1	+	0	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27103127	27103219	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27103220	27103429	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27103430	27103538	0.94	+	0	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27103430	27103538	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27103539	27103647	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27103648	27103697	1	+	2	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27103648	27103697	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27103698	27103819	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27103820	27103910	1	+	0	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27103820	27103910	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27103911	27104071	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27104072	27104145	0.84	+	2	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27104072	27104145	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27104146	27104255	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27104256	27104354	1	+	0	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27104256	27104354	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27104355	27104440	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27104441	27104507	0.98	+	0	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27104441	27104507	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	intron	27104508	27104609	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	CDS	27104610	27104695	0.98	+	2	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	exon	27104610	27104695	.	+	.	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
Ledus.S1	AUGUSTUS	stop_codon	27104696	27104698	.	+	0	transcript_id "Ledus.S1G324400.t1"; gene_id "Ledus.S1G324400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2854.t1 is derived from g288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4206636	4207769	.	+	.	Ledus.S1G027500
Ledus.S1	AUGUSTUS	transcript	4206636	4207769	.	+	.	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	start_codon	4206636	4206638	.	+	0	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	CDS	4206636	4206676	0.6	+	0	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	exon	4206636	4206676	.	+	.	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	intron	4206677	4206763	.	+	.	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	CDS	4206764	4206772	0.61	+	1	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	exon	4206764	4206772	.	+	.	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	intron	4206773	4206852	.	+	.	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	CDS	4206853	4206969	0.64	+	1	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	exon	4206853	4206969	.	+	.	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	intron	4206970	4207063	.	+	.	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	CDS	4207064	4207169	1	+	1	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	exon	4207064	4207169	.	+	.	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	intron	4207170	4207258	.	+	.	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	CDS	4207259	4207376	1	+	0	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	exon	4207259	4207376	.	+	.	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	intron	4207377	4207512	.	+	.	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	CDS	4207513	4207769	1	+	2	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	exon	4207513	4207769	.	+	.	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
Ledus.S1	AUGUSTUS	stop_codon	4207770	4207772	.	+	0	transcript_id "Ledus.S1G027500.t1"; gene_id "Ledus.S1G027500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6182.t1 is derived from g3625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29444055	29445488	.	-	.	Ledus.S1G360300
Ledus.S1	AUGUSTUS	transcript	29444055	29445488	.	-	.	transcript_id "Ledus.S1G360300.t1"; gene_id "Ledus.S1G360300"
Ledus.S1	AUGUSTUS	stop_codon	29444052	29444054	.	-	0	transcript_id "Ledus.S1G360300.t1"; gene_id "Ledus.S1G360300"
Ledus.S1	AUGUSTUS	CDS	29444055	29444513	0.97	-	0	transcript_id "Ledus.S1G360300.t1"; gene_id "Ledus.S1G360300"
Ledus.S1	AUGUSTUS	exon	29444055	29444513	.	-	.	transcript_id "Ledus.S1G360300.t1"; gene_id "Ledus.S1G360300"
Ledus.S1	AUGUSTUS	intron	29444514	29444615	.	-	.	transcript_id "Ledus.S1G360300.t1"; gene_id "Ledus.S1G360300"
Ledus.S1	AUGUSTUS	CDS	29444616	29445488	0.99	-	0	transcript_id "Ledus.S1G360300.t1"; gene_id "Ledus.S1G360300"
Ledus.S1	AUGUSTUS	exon	29444616	29445488	.	-	.	transcript_id "Ledus.S1G360300.t1"; gene_id "Ledus.S1G360300"
Ledus.S1	AUGUSTUS	start_codon	29445486	29445488	.	-	0	transcript_id "Ledus.S1G360300.t1"; gene_id "Ledus.S1G360300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13077.t1 is derived from g6887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5110252	5110941	.	+	.	Ledus.S6G013900
Ledus.S6	AUGUSTUS	transcript	5110252	5110941	.	+	.	transcript_id "Ledus.S6G013900.t1"; gene_id "Ledus.S6G013900"
Ledus.S6	AUGUSTUS	start_codon	5110252	5110254	.	+	0	transcript_id "Ledus.S6G013900.t1"; gene_id "Ledus.S6G013900"
Ledus.S6	AUGUSTUS	CDS	5110252	5110941	0.99	+	0	transcript_id "Ledus.S6G013900.t1"; gene_id "Ledus.S6G013900"
Ledus.S6	AUGUSTUS	exon	5110252	5110941	.	+	.	transcript_id "Ledus.S6G013900.t1"; gene_id "Ledus.S6G013900"
Ledus.S6	AUGUSTUS	stop_codon	5110942	5110944	.	+	0	transcript_id "Ledus.S6G013900.t1"; gene_id "Ledus.S6G013900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12941.t1 is derived from g6751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	94288	94497	.	-	.	Ledus.S6G000300
Ledus.S6	AUGUSTUS	transcript	94288	94497	.	-	.	transcript_id "Ledus.S6G000300.t1"; gene_id "Ledus.S6G000300"
Ledus.S6	AUGUSTUS	stop_codon	94285	94287	.	-	0	transcript_id "Ledus.S6G000300.t1"; gene_id "Ledus.S6G000300"
Ledus.S6	AUGUSTUS	CDS	94288	94497	0.71	-	0	transcript_id "Ledus.S6G000300.t1"; gene_id "Ledus.S6G000300"
Ledus.S6	AUGUSTUS	exon	94288	94497	.	-	.	transcript_id "Ledus.S6G000300.t1"; gene_id "Ledus.S6G000300"
Ledus.S6	AUGUSTUS	start_codon	94495	94497	.	-	0	transcript_id "Ledus.S6G000300.t1"; gene_id "Ledus.S6G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6822.t1 is derived from g4266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34499414	34500523	.	+	.	Ledus.S1G424300
Ledus.S1	AUGUSTUS	transcript	34499414	34500523	.	+	.	transcript_id "Ledus.S1G424300.t1"; gene_id "Ledus.S1G424300"
Ledus.S1	AUGUSTUS	start_codon	34499414	34499416	.	+	0	transcript_id "Ledus.S1G424300.t1"; gene_id "Ledus.S1G424300"
Ledus.S1	AUGUSTUS	CDS	34499414	34500523	0.93	+	0	transcript_id "Ledus.S1G424300.t1"; gene_id "Ledus.S1G424300"
Ledus.S1	AUGUSTUS	exon	34499414	34500523	.	+	.	transcript_id "Ledus.S1G424300.t1"; gene_id "Ledus.S1G424300"
Ledus.S1	AUGUSTUS	stop_codon	34500524	34500526	.	+	0	transcript_id "Ledus.S1G424300.t1"; gene_id "Ledus.S1G424300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4364.t1 is derived from g1800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16620802	16623505	.	-	.	Ledus.S1G178500
Ledus.S1	AUGUSTUS	transcript	16620802	16623505	.	-	.	transcript_id "Ledus.S1G178500.t1"; gene_id "Ledus.S1G178500"
Ledus.S1	AUGUSTUS	stop_codon	16620799	16620801	.	-	0	transcript_id "Ledus.S1G178500.t1"; gene_id "Ledus.S1G178500"
Ledus.S1	AUGUSTUS	CDS	16620802	16620875	0.61	-	2	transcript_id "Ledus.S1G178500.t1"; gene_id "Ledus.S1G178500"
Ledus.S1	AUGUSTUS	exon	16620802	16620875	.	-	.	transcript_id "Ledus.S1G178500.t1"; gene_id "Ledus.S1G178500"
Ledus.S1	AUGUSTUS	intron	16620876	16621005	.	-	.	transcript_id "Ledus.S1G178500.t1"; gene_id "Ledus.S1G178500"
Ledus.S1	AUGUSTUS	CDS	16621006	16623505	0.56	-	0	transcript_id "Ledus.S1G178500.t1"; gene_id "Ledus.S1G178500"
Ledus.S1	AUGUSTUS	exon	16621006	16623505	.	-	.	transcript_id "Ledus.S1G178500.t1"; gene_id "Ledus.S1G178500"
Ledus.S1	AUGUSTUS	start_codon	16623503	16623505	.	-	0	transcript_id "Ledus.S1G178500.t1"; gene_id "Ledus.S1G178500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13012.t1 is derived from g6822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2843791	2844805	.	-	.	Ledus.S6G007400
Ledus.S6	AUGUSTUS	transcript	2843791	2844805	.	-	.	transcript_id "Ledus.S6G007400.t1"; gene_id "Ledus.S6G007400"
Ledus.S6	AUGUSTUS	stop_codon	2843788	2843790	.	-	0	transcript_id "Ledus.S6G007400.t1"; gene_id "Ledus.S6G007400"
Ledus.S6	AUGUSTUS	CDS	2843791	2844241	0.95	-	1	transcript_id "Ledus.S6G007400.t1"; gene_id "Ledus.S6G007400"
Ledus.S6	AUGUSTUS	exon	2843791	2844241	.	-	.	transcript_id "Ledus.S6G007400.t1"; gene_id "Ledus.S6G007400"
Ledus.S6	AUGUSTUS	intron	2844242	2844569	.	-	.	transcript_id "Ledus.S6G007400.t1"; gene_id "Ledus.S6G007400"
Ledus.S6	AUGUSTUS	CDS	2844570	2844805	0.98	-	0	transcript_id "Ledus.S6G007400.t1"; gene_id "Ledus.S6G007400"
Ledus.S6	AUGUSTUS	exon	2844570	2844805	.	-	.	transcript_id "Ledus.S6G007400.t1"; gene_id "Ledus.S6G007400"
Ledus.S6	AUGUSTUS	start_codon	2844803	2844805	.	-	0	transcript_id "Ledus.S6G007400.t1"; gene_id "Ledus.S6G007400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4658.t1 is derived from g2096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18807838	18808227	.	-	.	Ledus.S1G207900
Ledus.S1	AUGUSTUS	transcript	18807838	18808227	.	-	.	transcript_id "Ledus.S1G207900.t1"; gene_id "Ledus.S1G207900"
Ledus.S1	AUGUSTUS	stop_codon	18807835	18807837	.	-	0	transcript_id "Ledus.S1G207900.t1"; gene_id "Ledus.S1G207900"
Ledus.S1	AUGUSTUS	CDS	18807838	18808227	0.97	-	0	transcript_id "Ledus.S1G207900.t1"; gene_id "Ledus.S1G207900"
Ledus.S1	AUGUSTUS	exon	18807838	18808227	.	-	.	transcript_id "Ledus.S1G207900.t1"; gene_id "Ledus.S1G207900"
Ledus.S1	AUGUSTUS	start_codon	18808225	18808227	.	-	0	transcript_id "Ledus.S1G207900.t1"; gene_id "Ledus.S1G207900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9336.t1 is derived from g10366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6189729	6193229	.	+	.	Ledus.S3G081300
Ledus.S3	AUGUSTUS	transcript	6189729	6193229	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	start_codon	6189729	6189731	.	+	0	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	CDS	6189729	6190607	0.62	+	0	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	exon	6189729	6190607	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	intron	6190608	6190695	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	CDS	6190696	6191511	0.94	+	0	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	exon	6190696	6191511	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	intron	6191512	6191684	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	CDS	6191685	6191748	1	+	0	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	exon	6191685	6191748	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	intron	6191749	6191828	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	CDS	6191829	6192235	0.92	+	2	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	exon	6191829	6192235	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	intron	6192236	6192340	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	CDS	6192341	6192559	0.97	+	0	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	exon	6192341	6192559	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	intron	6192560	6192727	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	CDS	6192728	6192838	0.96	+	0	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	exon	6192728	6192838	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	intron	6192839	6192938	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	CDS	6192939	6193229	0.98	+	0	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	exon	6192939	6193229	.	+	.	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
Ledus.S3	AUGUSTUS	stop_codon	6193230	6193232	.	+	0	transcript_id "Ledus.S3G081300.t1"; gene_id "Ledus.S3G081300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1076.t1 is derived from g7937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7298157	7299762	.	+	.	Ledus.S2G095800
Ledus.S2	AUGUSTUS	transcript	7298157	7299762	.	+	.	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	start_codon	7298157	7298159	.	+	0	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	CDS	7298157	7298208	0.75	+	0	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	exon	7298157	7298208	.	+	.	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	intron	7298209	7298321	.	+	.	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	CDS	7298322	7298993	0.43	+	2	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	exon	7298322	7298993	.	+	.	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	intron	7298994	7299167	.	+	.	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	CDS	7299168	7299211	0.63	+	2	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	exon	7299168	7299211	.	+	.	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	intron	7299212	7299496	.	+	.	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	CDS	7299497	7299562	0.67	+	0	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	exon	7299497	7299562	.	+	.	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	intron	7299563	7299702	.	+	.	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	CDS	7299703	7299762	1	+	0	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	exon	7299703	7299762	.	+	.	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
Ledus.S2	AUGUSTUS	stop_codon	7299763	7299765	.	+	0	transcript_id "Ledus.S2G095800.t1"; gene_id "Ledus.S2G095800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11592.t1 is derived from g5210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5430043	5431033	.	+	.	Ledus.S4G074800
Ledus.S4	AUGUSTUS	transcript	5430043	5431033	.	+	.	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	start_codon	5430043	5430045	.	+	0	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	CDS	5430043	5430142	1	+	0	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	exon	5430043	5430142	.	+	.	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	intron	5430143	5430219	.	+	.	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	CDS	5430220	5430278	1	+	2	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	exon	5430220	5430278	.	+	.	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	intron	5430279	5430352	.	+	.	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	CDS	5430353	5430535	1	+	0	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	exon	5430353	5430535	.	+	.	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	intron	5430536	5430619	.	+	.	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	CDS	5430620	5430790	1	+	0	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	exon	5430620	5430790	.	+	.	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	intron	5430791	5430880	.	+	.	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	CDS	5430881	5431033	0.98	+	0	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	exon	5430881	5431033	.	+	.	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
Ledus.S4	AUGUSTUS	stop_codon	5431034	5431036	.	+	0	transcript_id "Ledus.S4G074800.t1"; gene_id "Ledus.S4G074800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2024.t1 is derived from g8887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14221044	14222349	.	+	.	Ledus.S2G190600
Ledus.S2	AUGUSTUS	transcript	14221044	14222349	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	start_codon	14221044	14221046	.	+	0	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	CDS	14221044	14221194	0.99	+	0	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	exon	14221044	14221194	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	intron	14221195	14221269	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	CDS	14221270	14221368	1	+	2	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	exon	14221270	14221368	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	intron	14221369	14221519	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	CDS	14221520	14221593	1	+	2	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	exon	14221520	14221593	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	intron	14221594	14221687	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	CDS	14221688	14221810	1	+	0	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	exon	14221688	14221810	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	intron	14221811	14221914	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	CDS	14221915	14221986	1	+	0	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	exon	14221915	14221986	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	intron	14221987	14222069	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	CDS	14222070	14222166	1	+	0	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	exon	14222070	14222166	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	intron	14222167	14222251	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	CDS	14222252	14222349	1	+	2	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	exon	14222252	14222349	.	+	.	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
Ledus.S2	AUGUSTUS	stop_codon	14222350	14222352	.	+	0	transcript_id "Ledus.S2G190600.t1"; gene_id "Ledus.S2G190600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3891.t1 is derived from g1327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13427055	13432847	.	-	.	Ledus.S1G131200
Ledus.S1	AUGUSTUS	transcript	13427055	13432847	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	stop_codon	13427052	13427054	.	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13427055	13427956	1	-	2	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13427055	13427956	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13427957	13428036	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13428037	13428154	1	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13428037	13428154	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13428155	13428246	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13428247	13428415	0.95	-	1	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13428247	13428415	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13428416	13428528	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13428529	13428605	0.99	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13428529	13428605	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13428606	13428718	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13428719	13428805	0.93	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13428719	13428805	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13428806	13428915	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13428916	13429002	1	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13428916	13429002	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13429003	13429153	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13429154	13429271	1	-	1	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13429154	13429271	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13429272	13429367	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13429368	13429659	0.63	-	2	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13429368	13429659	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13429660	13429948	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13429949	13430157	1	-	1	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13429949	13430157	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13430158	13430246	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13430247	13430299	1	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13430247	13430299	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13430300	13430403	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13430404	13430574	0.99	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13430404	13430574	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13430575	13430683	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13430684	13430768	0.99	-	1	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13430684	13430768	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13430769	13430885	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13430886	13431064	1	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13430886	13431064	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13431065	13431154	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13431155	13431280	1	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13431155	13431280	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13431281	13431399	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13431400	13431531	1	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13431400	13431531	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13431532	13431678	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13431679	13431765	1	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13431679	13431765	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13431766	13431924	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13431925	13432549	1	-	1	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13431925	13432549	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	intron	13432550	13432641	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	CDS	13432642	13432847	0.98	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	exon	13432642	13432847	.	-	.	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
Ledus.S1	AUGUSTUS	start_codon	13432845	13432847	.	-	0	transcript_id "Ledus.S1G131200.t1"; gene_id "Ledus.S1G131200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg96.t1 is derived from g9509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	400375	400758	.	-	.	Ledus.C8G005600
Ledus.C8	AUGUSTUS	transcript	400375	400758	.	-	.	transcript_id "Ledus.C8G005600.t1"; gene_id "Ledus.C8G005600"
Ledus.C8	AUGUSTUS	stop_codon	400372	400374	.	-	0	transcript_id "Ledus.C8G005600.t1"; gene_id "Ledus.C8G005600"
Ledus.C8	AUGUSTUS	CDS	400375	400758	0.94	-	0	transcript_id "Ledus.C8G005600.t1"; gene_id "Ledus.C8G005600"
Ledus.C8	AUGUSTUS	exon	400375	400758	.	-	.	transcript_id "Ledus.C8G005600.t1"; gene_id "Ledus.C8G005600"
Ledus.C8	AUGUSTUS	start_codon	400756	400758	.	-	0	transcript_id "Ledus.C8G005600.t1"; gene_id "Ledus.C8G005600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg734.t1 is derived from g7595.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4671803	4676373	.	+	.	Ledus.S2G061600
Ledus.S2	AUGUSTUS	transcript	4671803	4676373	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	start_codon	4671803	4671805	.	+	0	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4671803	4671939	0.99	+	0	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4671803	4671939	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4671940	4672106	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4672107	4672161	1	+	1	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4672107	4672161	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4672162	4672317	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4672318	4672375	1	+	0	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4672318	4672375	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4672376	4672667	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4672668	4672762	0.95	+	2	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4672668	4672762	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4672763	4672866	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4672867	4672970	0.98	+	0	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4672867	4672970	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4672971	4673096	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4673097	4673225	1	+	1	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4673097	4673225	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4673226	4673326	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4673327	4675279	0.98	+	1	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4673327	4675279	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4675280	4675476	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4675477	4675573	0.99	+	1	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4675477	4675573	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4675574	4675686	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4675687	4675932	0.99	+	0	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4675687	4675932	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4675933	4676077	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4676078	4676208	0.78	+	0	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4676078	4676208	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4676209	4676303	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4676304	4676373	0.67	+	1	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4676304	4676373	.	+	.	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	stop_codon	4676374	4676376	.	+	0	transcript_id "Ledus.S2G061600.t1"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	transcript	4671803	4675466	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	start_codon	4671803	4671805	.	+	0	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4671803	4671939	1	+	0	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4671803	4671939	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4671940	4672106	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4672107	4672161	1	+	1	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4672107	4672161	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4672162	4672317	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4672318	4672375	1	+	0	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4672318	4672375	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4672376	4672667	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4672668	4672762	0.95	+	2	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4672668	4672762	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4672763	4672866	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4672867	4672970	0.97	+	0	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4672867	4672970	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4672971	4673096	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4673097	4673225	0.98	+	1	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4673097	4673225	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4673226	4673326	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4673327	4675279	0.66	+	1	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4673327	4675279	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	intron	4675280	4675462	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	CDS	4675463	4675466	0.39	+	1	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	exon	4675463	4675466	.	+	.	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
Ledus.S2	AUGUSTUS	stop_codon	4675467	4675469	.	+	0	transcript_id "Ledus.S2G061600.t2"; gene_id "Ledus.S2G061600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5077.t1 is derived from g2516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21473799	21474285	.	-	.	Ledus.S1G249800
Ledus.S1	AUGUSTUS	transcript	21473799	21474285	.	-	.	transcript_id "Ledus.S1G249800.t1"; gene_id "Ledus.S1G249800"
Ledus.S1	AUGUSTUS	stop_codon	21473796	21473798	.	-	0	transcript_id "Ledus.S1G249800.t1"; gene_id "Ledus.S1G249800"
Ledus.S1	AUGUSTUS	CDS	21473799	21473941	0.72	-	2	transcript_id "Ledus.S1G249800.t1"; gene_id "Ledus.S1G249800"
Ledus.S1	AUGUSTUS	exon	21473799	21473941	.	-	.	transcript_id "Ledus.S1G249800.t1"; gene_id "Ledus.S1G249800"
Ledus.S1	AUGUSTUS	intron	21473942	21474068	.	-	.	transcript_id "Ledus.S1G249800.t1"; gene_id "Ledus.S1G249800"
Ledus.S1	AUGUSTUS	CDS	21474069	21474285	0.65	-	0	transcript_id "Ledus.S1G249800.t1"; gene_id "Ledus.S1G249800"
Ledus.S1	AUGUSTUS	exon	21474069	21474285	.	-	.	transcript_id "Ledus.S1G249800.t1"; gene_id "Ledus.S1G249800"
Ledus.S1	AUGUSTUS	start_codon	21474283	21474285	.	-	0	transcript_id "Ledus.S1G249800.t1"; gene_id "Ledus.S1G249800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2730.t1 is derived from g164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2670315	2673074	.	+	.	Ledus.S1G015100
Ledus.S1	AUGUSTUS	transcript	2670315	2673074	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	start_codon	2670315	2670317	.	+	0	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	CDS	2670315	2670734	0.38	+	0	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	exon	2670315	2670734	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	intron	2670735	2670831	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	CDS	2670832	2670906	1	+	0	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	exon	2670832	2670906	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	intron	2670907	2671054	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	CDS	2671055	2671108	1	+	0	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	exon	2671055	2671108	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	intron	2671109	2671193	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	CDS	2671194	2671272	1	+	0	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	exon	2671194	2671272	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	intron	2671273	2671378	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	CDS	2671379	2671506	1	+	2	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	exon	2671379	2671506	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	intron	2671507	2671690	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	CDS	2671691	2671774	1	+	0	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	exon	2671691	2671774	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	intron	2671775	2671944	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	CDS	2671945	2672028	1	+	0	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	exon	2671945	2672028	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	intron	2672029	2672144	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	CDS	2672145	2672296	1	+	0	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	exon	2672145	2672296	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	intron	2672297	2672381	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	CDS	2672382	2672532	1	+	1	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	exon	2672382	2672532	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	intron	2672533	2672666	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	CDS	2672667	2673074	0.94	+	0	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	exon	2672667	2673074	.	+	.	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
Ledus.S1	AUGUSTUS	stop_codon	2673075	2673077	.	+	0	transcript_id "Ledus.S1G015100.t1"; gene_id "Ledus.S1G015100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6206.t1 is derived from g3649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29618777	29623029	.	-	.	Ledus.S1G362700
Ledus.S1	AUGUSTUS	transcript	29618777	29623029	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	stop_codon	29618774	29618776	.	-	0	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29618777	29618942	0.78	-	1	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29618777	29618942	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29618943	29619035	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29619036	29619214	1	-	0	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29619036	29619214	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29619215	29619311	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29619312	29619463	1	-	2	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29619312	29619463	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29619464	29619562	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29619563	29619629	0.99	-	0	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29619563	29619629	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29619630	29619739	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29619740	29619887	0.97	-	1	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29619740	29619887	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29619888	29620002	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29620003	29620126	0.75	-	2	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29620003	29620126	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29620127	29620229	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29620230	29620322	0.86	-	2	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29620230	29620322	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29620323	29620454	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29620455	29620669	0.98	-	1	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29620455	29620669	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29620670	29620762	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29620763	29620849	1	-	1	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29620763	29620849	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29620850	29621037	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29621038	29621129	1	-	0	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29621038	29621129	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29621130	29621280	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29621281	29621397	1	-	0	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29621281	29621397	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29621398	29621601	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29621602	29621654	1	-	2	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29621602	29621654	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29621655	29621757	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29621758	29621975	0.96	-	1	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29621758	29621975	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29621976	29622080	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29622081	29622185	0.49	-	1	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29622081	29622185	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29622186	29622290	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29622291	29622383	0.49	-	1	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29622291	29622383	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29622384	29622526	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29622527	29622653	0.93	-	2	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29622527	29622653	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29622654	29622720	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29622721	29622771	0.85	-	2	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29622721	29622771	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	intron	29622772	29623013	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	CDS	29623014	29623029	0.86	-	0	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	exon	29623014	29623029	.	-	.	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
Ledus.S1	AUGUSTUS	start_codon	29623027	29623029	.	-	0	transcript_id "Ledus.S1G362700.t1"; gene_id "Ledus.S1G362700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6590.t1 is derived from g4033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32544676	32545595	.	-	.	Ledus.S1G401100
Ledus.S1	AUGUSTUS	transcript	32544676	32545595	.	-	.	transcript_id "Ledus.S1G401100.t1"; gene_id "Ledus.S1G401100"
Ledus.S1	AUGUSTUS	stop_codon	32544673	32544675	.	-	0	transcript_id "Ledus.S1G401100.t1"; gene_id "Ledus.S1G401100"
Ledus.S1	AUGUSTUS	CDS	32544676	32544825	0.01	-	0	transcript_id "Ledus.S1G401100.t1"; gene_id "Ledus.S1G401100"
Ledus.S1	AUGUSTUS	exon	32544676	32544825	.	-	.	transcript_id "Ledus.S1G401100.t1"; gene_id "Ledus.S1G401100"
Ledus.S1	AUGUSTUS	intron	32544826	32545544	.	-	.	transcript_id "Ledus.S1G401100.t1"; gene_id "Ledus.S1G401100"
Ledus.S1	AUGUSTUS	CDS	32545545	32545595	0.01	-	0	transcript_id "Ledus.S1G401100.t1"; gene_id "Ledus.S1G401100"
Ledus.S1	AUGUSTUS	exon	32545545	32545595	.	-	.	transcript_id "Ledus.S1G401100.t1"; gene_id "Ledus.S1G401100"
Ledus.S1	AUGUSTUS	start_codon	32545593	32545595	.	-	0	transcript_id "Ledus.S1G401100.t1"; gene_id "Ledus.S1G401100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4529.t1 is derived from g1966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17535956	17536258	.	-	.	Ledus.S1G195000
Ledus.S1	AUGUSTUS	transcript	17535956	17536258	.	-	.	transcript_id "Ledus.S1G195000.t1"; gene_id "Ledus.S1G195000"
Ledus.S1	AUGUSTUS	stop_codon	17535953	17535955	.	-	0	transcript_id "Ledus.S1G195000.t1"; gene_id "Ledus.S1G195000"
Ledus.S1	AUGUSTUS	CDS	17535956	17536258	0.39	-	0	transcript_id "Ledus.S1G195000.t1"; gene_id "Ledus.S1G195000"
Ledus.S1	AUGUSTUS	exon	17535956	17536258	.	-	.	transcript_id "Ledus.S1G195000.t1"; gene_id "Ledus.S1G195000"
Ledus.S1	AUGUSTUS	start_codon	17536256	17536258	.	-	0	transcript_id "Ledus.S1G195000.t1"; gene_id "Ledus.S1G195000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1529.t1 is derived from g8390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10810842	10812844	.	+	.	Ledus.S2G141100
Ledus.S2	AUGUSTUS	transcript	10810842	10812844	.	+	.	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	start_codon	10810842	10810844	.	+	0	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	CDS	10810842	10811047	0.32	+	0	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	exon	10810842	10811047	.	+	.	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	intron	10811048	10811159	.	+	.	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	CDS	10811160	10812039	0.99	+	1	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	exon	10811160	10812039	.	+	.	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	intron	10812040	10812167	.	+	.	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	CDS	10812168	10812427	1	+	0	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	exon	10812168	10812427	.	+	.	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	intron	10812428	10812516	.	+	.	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	CDS	10812517	10812844	0.9	+	1	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	exon	10812517	10812844	.	+	.	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
Ledus.S2	AUGUSTUS	stop_codon	10812845	10812847	.	+	0	transcript_id "Ledus.S2G141100.t1"; gene_id "Ledus.S2G141100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9760.t1 is derived from g10790.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9639601	9641376	.	-	.	Ledus.S3G123700
Ledus.S3	AUGUSTUS	transcript	9639601	9641376	.	-	.	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	stop_codon	9639598	9639600	.	-	0	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	CDS	9639601	9640271	1	-	2	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	exon	9639601	9640271	.	-	.	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	intron	9640272	9640352	.	-	.	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	CDS	9640353	9640622	1	-	2	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	exon	9640353	9640622	.	-	.	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	intron	9640623	9640710	.	-	.	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	CDS	9640711	9641117	1	-	1	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	exon	9640711	9641117	.	-	.	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	intron	9641118	9641299	.	-	.	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	CDS	9641300	9641376	0.69	-	0	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	exon	9641300	9641376	.	-	.	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
Ledus.S3	AUGUSTUS	start_codon	9641374	9641376	.	-	0	transcript_id "Ledus.S3G123700.t1"; gene_id "Ledus.S3G123700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7092.t1 is derived from g6623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1510343	1511913	.	-	.	Ledus.C7G015300
Ledus.C7	AUGUSTUS	transcript	1510343	1511913	.	-	.	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	stop_codon	1510340	1510342	.	-	0	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	CDS	1510343	1510573	1	-	0	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	exon	1510343	1510573	.	-	.	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	intron	1510574	1510696	.	-	.	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	CDS	1510697	1510796	0.67	-	1	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	exon	1510697	1510796	.	-	.	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	intron	1510797	1510897	.	-	.	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	CDS	1510898	1511067	0.76	-	0	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	exon	1510898	1511067	.	-	.	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	intron	1511068	1511198	.	-	.	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	CDS	1511199	1511306	1	-	0	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	exon	1511199	1511306	.	-	.	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	intron	1511307	1511394	.	-	.	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	CDS	1511395	1511913	0.68	-	0	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	exon	1511395	1511913	.	-	.	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
Ledus.C7	AUGUSTUS	start_codon	1511911	1511913	.	-	0	transcript_id "Ledus.C7G015300.t1"; gene_id "Ledus.C7G015300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11862.t1 is derived from g5481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7422464	7423121	.	-	.	Ledus.S4G101800
Ledus.S4	AUGUSTUS	transcript	7422464	7423121	.	-	.	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	stop_codon	7422461	7422463	.	-	0	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	CDS	7422464	7422602	0.87	-	1	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	exon	7422464	7422602	.	-	.	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	intron	7422603	7422683	.	-	.	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	CDS	7422684	7422712	1	-	0	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	exon	7422684	7422712	.	-	.	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	intron	7422713	7422801	.	-	.	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	CDS	7422802	7422843	1	-	0	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	exon	7422802	7422843	.	-	.	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	intron	7422844	7422935	.	-	.	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	CDS	7422936	7423121	0.91	-	0	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	exon	7422936	7423121	.	-	.	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
Ledus.S4	AUGUSTUS	start_codon	7423119	7423121	.	-	0	transcript_id "Ledus.S4G101800.t1"; gene_id "Ledus.S4G101800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5321.t1 is derived from g2760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23295641	23297566	.	-	.	Ledus.S1G274200
Ledus.S1	AUGUSTUS	transcript	23295641	23297566	.	-	.	transcript_id "Ledus.S1G274200.t1"; gene_id "Ledus.S1G274200"
Ledus.S1	AUGUSTUS	stop_codon	23295638	23295640	.	-	0	transcript_id "Ledus.S1G274200.t1"; gene_id "Ledus.S1G274200"
Ledus.S1	AUGUSTUS	CDS	23295641	23297566	0.82	-	0	transcript_id "Ledus.S1G274200.t1"; gene_id "Ledus.S1G274200"
Ledus.S1	AUGUSTUS	exon	23295641	23297566	.	-	.	transcript_id "Ledus.S1G274200.t1"; gene_id "Ledus.S1G274200"
Ledus.S1	AUGUSTUS	start_codon	23297564	23297566	.	-	0	transcript_id "Ledus.S1G274200.t1"; gene_id "Ledus.S1G274200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8328.t1 is derived from g13000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10775993	10777620	.	+	.	Ledus.S5G110600
Ledus.S5	AUGUSTUS	transcript	10775993	10777620	.	+	.	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	start_codon	10775993	10775995	.	+	0	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	CDS	10775993	10776014	0.66	+	0	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	exon	10775993	10776014	.	+	.	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	intron	10776015	10776151	.	+	.	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	CDS	10776152	10776183	0.61	+	2	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	exon	10776152	10776183	.	+	.	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	intron	10776184	10776401	.	+	.	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	CDS	10776402	10776909	0.56	+	0	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	exon	10776402	10776909	.	+	.	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	intron	10776910	10777063	.	+	.	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	CDS	10777064	10777620	0.98	+	2	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	exon	10777064	10777620	.	+	.	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
Ledus.S5	AUGUSTUS	stop_codon	10777621	10777623	.	+	0	transcript_id "Ledus.S5G110600.t1"; gene_id "Ledus.S5G110600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7570.t1 is derived from g12241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4092666	4094483	.	-	.	Ledus.S5G034800
Ledus.S5	AUGUSTUS	transcript	4092666	4094483	.	-	.	transcript_id "Ledus.S5G034800.t1"; gene_id "Ledus.S5G034800"
Ledus.S5	AUGUSTUS	stop_codon	4092663	4092665	.	-	0	transcript_id "Ledus.S5G034800.t1"; gene_id "Ledus.S5G034800"
Ledus.S5	AUGUSTUS	CDS	4092666	4094483	0.51	-	0	transcript_id "Ledus.S5G034800.t1"; gene_id "Ledus.S5G034800"
Ledus.S5	AUGUSTUS	exon	4092666	4094483	.	-	.	transcript_id "Ledus.S5G034800.t1"; gene_id "Ledus.S5G034800"
Ledus.S5	AUGUSTUS	start_codon	4094481	4094483	.	-	0	transcript_id "Ledus.S5G034800.t1"; gene_id "Ledus.S5G034800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12415.t1 is derived from g6036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11890434	11890724	.	-	.	Ledus.S4G157100
Ledus.S4	AUGUSTUS	transcript	11890434	11890724	.	-	.	transcript_id "Ledus.S4G157100.t1"; gene_id "Ledus.S4G157100"
Ledus.S4	AUGUSTUS	stop_codon	11890431	11890433	.	-	0	transcript_id "Ledus.S4G157100.t1"; gene_id "Ledus.S4G157100"
Ledus.S4	AUGUSTUS	CDS	11890434	11890724	0.96	-	0	transcript_id "Ledus.S4G157100.t1"; gene_id "Ledus.S4G157100"
Ledus.S4	AUGUSTUS	exon	11890434	11890724	.	-	.	transcript_id "Ledus.S4G157100.t1"; gene_id "Ledus.S4G157100"
Ledus.S4	AUGUSTUS	start_codon	11890722	11890724	.	-	0	transcript_id "Ledus.S4G157100.t1"; gene_id "Ledus.S4G157100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12136.t1 is derived from g5755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9765865	9770662	.	+	.	Ledus.S4G129200
Ledus.S4	AUGUSTUS	transcript	9765865	9770662	.	+	.	transcript_id "Ledus.S4G129200.t1"; gene_id "Ledus.S4G129200"
Ledus.S4	AUGUSTUS	start_codon	9765865	9765867	.	+	0	transcript_id "Ledus.S4G129200.t1"; gene_id "Ledus.S4G129200"
Ledus.S4	AUGUSTUS	CDS	9765865	9766317	0.69	+	0	transcript_id "Ledus.S4G129200.t1"; gene_id "Ledus.S4G129200"
Ledus.S4	AUGUSTUS	exon	9765865	9766317	.	+	.	transcript_id "Ledus.S4G129200.t1"; gene_id "Ledus.S4G129200"
Ledus.S4	AUGUSTUS	intron	9766318	9766399	.	+	.	transcript_id "Ledus.S4G129200.t1"; gene_id "Ledus.S4G129200"
Ledus.S4	AUGUSTUS	CDS	9766400	9770662	1	+	0	transcript_id "Ledus.S4G129200.t1"; gene_id "Ledus.S4G129200"
Ledus.S4	AUGUSTUS	exon	9766400	9770662	.	+	.	transcript_id "Ledus.S4G129200.t1"; gene_id "Ledus.S4G129200"
Ledus.S4	AUGUSTUS	stop_codon	9770663	9770665	.	+	0	transcript_id "Ledus.S4G129200.t1"; gene_id "Ledus.S4G129200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9836.t1 is derived from g10866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10413825	10414043	.	+	.	Ledus.S3G131300
Ledus.S3	AUGUSTUS	transcript	10413825	10414043	.	+	.	transcript_id "Ledus.S3G131300.t1"; gene_id "Ledus.S3G131300"
Ledus.S3	AUGUSTUS	start_codon	10413825	10413827	.	+	0	transcript_id "Ledus.S3G131300.t1"; gene_id "Ledus.S3G131300"
Ledus.S3	AUGUSTUS	CDS	10413825	10414043	0.9	+	0	transcript_id "Ledus.S3G131300.t1"; gene_id "Ledus.S3G131300"
Ledus.S3	AUGUSTUS	exon	10413825	10414043	.	+	.	transcript_id "Ledus.S3G131300.t1"; gene_id "Ledus.S3G131300"
Ledus.S3	AUGUSTUS	stop_codon	10414044	10414046	.	+	0	transcript_id "Ledus.S3G131300.t1"; gene_id "Ledus.S3G131300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5602.t1 is derived from g3041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25327617	25328451	.	+	.	Ledus.S1G302300
Ledus.S1	AUGUSTUS	transcript	25327617	25328451	.	+	.	transcript_id "Ledus.S1G302300.t1"; gene_id "Ledus.S1G302300"
Ledus.S1	AUGUSTUS	start_codon	25327617	25327619	.	+	0	transcript_id "Ledus.S1G302300.t1"; gene_id "Ledus.S1G302300"
Ledus.S1	AUGUSTUS	CDS	25327617	25327700	0.9	+	0	transcript_id "Ledus.S1G302300.t1"; gene_id "Ledus.S1G302300"
Ledus.S1	AUGUSTUS	exon	25327617	25327700	.	+	.	transcript_id "Ledus.S1G302300.t1"; gene_id "Ledus.S1G302300"
Ledus.S1	AUGUSTUS	intron	25327701	25328019	.	+	.	transcript_id "Ledus.S1G302300.t1"; gene_id "Ledus.S1G302300"
Ledus.S1	AUGUSTUS	CDS	25328020	25328099	0.95	+	0	transcript_id "Ledus.S1G302300.t1"; gene_id "Ledus.S1G302300"
Ledus.S1	AUGUSTUS	exon	25328020	25328099	.	+	.	transcript_id "Ledus.S1G302300.t1"; gene_id "Ledus.S1G302300"
Ledus.S1	AUGUSTUS	intron	25328100	25328372	.	+	.	transcript_id "Ledus.S1G302300.t1"; gene_id "Ledus.S1G302300"
Ledus.S1	AUGUSTUS	CDS	25328373	25328451	0.97	+	1	transcript_id "Ledus.S1G302300.t1"; gene_id "Ledus.S1G302300"
Ledus.S1	AUGUSTUS	exon	25328373	25328451	.	+	.	transcript_id "Ledus.S1G302300.t1"; gene_id "Ledus.S1G302300"
Ledus.S1	AUGUSTUS	stop_codon	25328452	25328454	.	+	0	transcript_id "Ledus.S1G302300.t1"; gene_id "Ledus.S1G302300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7854.t1 is derived from g12525.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7500390	7501891	.	+	.	Ledus.S5G063200
Ledus.S5	AUGUSTUS	transcript	7500390	7501891	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	start_codon	7500390	7500392	.	+	0	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	CDS	7500390	7500451	1	+	0	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	exon	7500390	7500451	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	intron	7500452	7500544	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	CDS	7500545	7500612	1	+	1	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	exon	7500545	7500612	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	intron	7500613	7500706	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	CDS	7500707	7500826	1	+	2	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	exon	7500707	7500826	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	intron	7500827	7500981	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	CDS	7500982	7501055	1	+	2	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	exon	7500982	7501055	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	intron	7501056	7501194	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	CDS	7501195	7501252	1	+	0	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	exon	7501195	7501252	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	intron	7501253	7501340	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	CDS	7501341	7501464	0.92	+	2	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	exon	7501341	7501464	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	intron	7501465	7501547	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	CDS	7501548	7501667	0.89	+	1	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	exon	7501548	7501667	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	intron	7501668	7501764	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	CDS	7501765	7501891	0.98	+	1	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	exon	7501765	7501891	.	+	.	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
Ledus.S5	AUGUSTUS	stop_codon	7501892	7501894	.	+	0	transcript_id "Ledus.S5G063200.t1"; gene_id "Ledus.S5G063200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9443.t1 is derived from g10473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6811880	6812347	.	+	.	Ledus.S3G092000
Ledus.S3	AUGUSTUS	transcript	6811880	6812347	.	+	.	transcript_id "Ledus.S3G092000.t1"; gene_id "Ledus.S3G092000"
Ledus.S3	AUGUSTUS	start_codon	6811880	6811882	.	+	0	transcript_id "Ledus.S3G092000.t1"; gene_id "Ledus.S3G092000"
Ledus.S3	AUGUSTUS	CDS	6811880	6812347	0.51	+	0	transcript_id "Ledus.S3G092000.t1"; gene_id "Ledus.S3G092000"
Ledus.S3	AUGUSTUS	exon	6811880	6812347	.	+	.	transcript_id "Ledus.S3G092000.t1"; gene_id "Ledus.S3G092000"
Ledus.S3	AUGUSTUS	stop_codon	6812348	6812350	.	+	0	transcript_id "Ledus.S3G092000.t1"; gene_id "Ledus.S3G092000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9288.t1 is derived from g10318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5794799	5797684	.	+	.	Ledus.S3G076500
Ledus.S3	AUGUSTUS	transcript	5794799	5797684	.	+	.	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	start_codon	5794799	5794801	.	+	0	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	CDS	5794799	5794962	1	+	0	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	exon	5794799	5794962	.	+	.	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	intron	5794963	5795067	.	+	.	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	CDS	5795068	5795111	0.94	+	1	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	exon	5795068	5795111	.	+	.	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	intron	5795112	5795215	.	+	.	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	CDS	5795216	5796588	0.88	+	2	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	exon	5795216	5796588	.	+	.	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	intron	5796589	5796689	.	+	.	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	CDS	5796690	5797248	0.92	+	0	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	exon	5796690	5797248	.	+	.	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	intron	5797249	5797461	.	+	.	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	CDS	5797462	5797561	1	+	2	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	exon	5797462	5797561	.	+	.	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	intron	5797562	5797647	.	+	.	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	CDS	5797648	5797684	1	+	1	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	exon	5797648	5797684	.	+	.	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
Ledus.S3	AUGUSTUS	stop_codon	5797685	5797687	.	+	0	transcript_id "Ledus.S3G076500.t1"; gene_id "Ledus.S3G076500"
# This transcript jg11675.t2 is derived from g5294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11676.t1 is derived from g5295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5924465	5928579	.	+	.	Ledus.S4G083200
Ledus.S4	AUGUSTUS	transcript	5924465	5928579	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	start_codon	5924465	5924467	.	+	0	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5924465	5924701	0.84	+	0	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5924465	5924701	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5924702	5924776	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5924777	5924949	1	+	0	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5924777	5924949	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5924950	5925112	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5925113	5925185	1	+	1	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5925113	5925185	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5925186	5925308	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5925309	5925443	1	+	0	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5925309	5925443	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5925444	5925576	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5925577	5925787	1	+	0	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5925577	5925787	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5925788	5925866	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5925867	5926015	1	+	2	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5925867	5926015	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5926016	5926108	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5926109	5926207	1	+	0	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5926109	5926207	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5926208	5926294	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5926295	5926361	1	+	0	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5926295	5926361	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5926362	5926459	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5926460	5926622	1	+	2	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5926460	5926622	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5926623	5926749	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5926750	5926844	1	+	1	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5926750	5926844	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5926845	5926947	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5926948	5927056	1	+	2	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5926948	5927056	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5927057	5927208	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5927209	5927374	1	+	1	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5927209	5927374	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5927375	5927455	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5927456	5927617	1	+	0	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5927456	5927617	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5927618	5927744	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5927745	5927928	1	+	0	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5927745	5927928	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5927929	5928060	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5928061	5928212	1	+	2	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5928061	5928212	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5928213	5928308	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5928309	5928315	1	+	0	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5928309	5928315	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5928316	5928359	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5928360	5928378	1	+	2	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5928360	5928378	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	intron	5928379	5928467	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	CDS	5928468	5928579	0.71	+	1	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	exon	5928468	5928579	.	+	.	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
Ledus.S4	AUGUSTUS	stop_codon	5928580	5928582	.	+	0	transcript_id "Ledus.S4G083200.t1"; gene_id "Ledus.S4G083200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11450.t1 is derived from g5068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4387580	4388992	.	-	.	Ledus.S4G060600
Ledus.S4	AUGUSTUS	transcript	4387580	4388992	.	-	.	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	stop_codon	4387577	4387579	.	-	0	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	CDS	4387580	4387689	1	-	2	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	exon	4387580	4387689	.	-	.	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	intron	4387690	4387786	.	-	.	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	CDS	4387787	4388249	0.97	-	0	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	exon	4387787	4388249	.	-	.	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	intron	4388250	4388487	.	-	.	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	CDS	4388488	4388750	0.61	-	2	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	exon	4388488	4388750	.	-	.	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	intron	4388751	4388868	.	-	.	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	CDS	4388869	4388992	0.71	-	0	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	exon	4388869	4388992	.	-	.	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
Ledus.S4	AUGUSTUS	start_codon	4388990	4388992	.	-	0	transcript_id "Ledus.S4G060600.t1"; gene_id "Ledus.S4G060600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6753.t1 is derived from g4196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33771838	33773689	.	-	.	Ledus.S1G417400
Ledus.S1	AUGUSTUS	transcript	33771838	33773689	.	-	.	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	stop_codon	33771835	33771837	.	-	0	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	CDS	33771838	33771957	1	-	0	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	exon	33771838	33771957	.	-	.	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	intron	33771958	33772092	.	-	.	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	CDS	33772093	33772133	1	-	2	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	exon	33772093	33772133	.	-	.	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	intron	33772134	33772242	.	-	.	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	CDS	33772243	33772448	1	-	1	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	exon	33772243	33772448	.	-	.	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	intron	33772449	33772541	.	-	.	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	CDS	33772542	33772639	1	-	0	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	exon	33772542	33772639	.	-	.	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	intron	33772640	33772769	.	-	.	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	CDS	33772770	33772870	1	-	2	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	exon	33772770	33772870	.	-	.	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	intron	33772871	33773316	.	-	.	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	CDS	33773317	33773689	0.95	-	0	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	exon	33773317	33773689	.	-	.	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	start_codon	33773687	33773689	.	-	0	transcript_id "Ledus.S1G417400.t1"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	transcript	33771838	33773689	.	-	.	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	stop_codon	33771835	33771837	.	-	0	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	CDS	33771838	33771957	1	-	0	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	exon	33771838	33771957	.	-	.	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	intron	33771958	33772057	.	-	.	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	CDS	33772058	33772065	0.87	-	2	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	exon	33772058	33772065	.	-	.	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	intron	33772066	33772242	.	-	.	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	CDS	33772243	33772448	0.92	-	1	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	exon	33772243	33772448	.	-	.	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	intron	33772449	33772541	.	-	.	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	CDS	33772542	33772639	1	-	0	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	exon	33772542	33772639	.	-	.	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	intron	33772640	33772769	.	-	.	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	CDS	33772770	33772870	1	-	2	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	exon	33772770	33772870	.	-	.	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	intron	33772871	33773316	.	-	.	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	CDS	33773317	33773689	0.98	-	0	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	exon	33773317	33773689	.	-	.	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
Ledus.S1	AUGUSTUS	start_codon	33773687	33773689	.	-	0	transcript_id "Ledus.S1G417400.t2"; gene_id "Ledus.S1G417400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7874.t1 is derived from g12545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7561352	7566839	.	+	.	Ledus.S5G065200
Ledus.S5	AUGUSTUS	transcript	7561352	7566839	.	+	.	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	start_codon	7561352	7561354	.	+	0	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	CDS	7561352	7561719	0.85	+	0	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	exon	7561352	7561719	.	+	.	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	intron	7561720	7562159	.	+	.	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	CDS	7562160	7562400	0.6	+	1	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	exon	7562160	7562400	.	+	.	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	intron	7562401	7562470	.	+	.	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	CDS	7562471	7563058	0.96	+	0	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	exon	7562471	7563058	.	+	.	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	intron	7563059	7563173	.	+	.	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	CDS	7563174	7563363	0.94	+	0	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	exon	7563174	7563363	.	+	.	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	intron	7563364	7563453	.	+	.	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	CDS	7563454	7566839	0.95	+	2	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	exon	7563454	7566839	.	+	.	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
Ledus.S5	AUGUSTUS	stop_codon	7566840	7566842	.	+	0	transcript_id "Ledus.S5G065200.t1"; gene_id "Ledus.S5G065200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg906.t1 is derived from g7767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6057065	6058312	.	+	.	Ledus.S2G078800
Ledus.S2	AUGUSTUS	transcript	6057065	6058312	.	+	.	transcript_id "Ledus.S2G078800.t1"; gene_id "Ledus.S2G078800"
Ledus.S2	AUGUSTUS	start_codon	6057065	6057067	.	+	0	transcript_id "Ledus.S2G078800.t1"; gene_id "Ledus.S2G078800"
Ledus.S2	AUGUSTUS	CDS	6057065	6057394	0.99	+	0	transcript_id "Ledus.S2G078800.t1"; gene_id "Ledus.S2G078800"
Ledus.S2	AUGUSTUS	exon	6057065	6057394	.	+	.	transcript_id "Ledus.S2G078800.t1"; gene_id "Ledus.S2G078800"
Ledus.S2	AUGUSTUS	intron	6057395	6057478	.	+	.	transcript_id "Ledus.S2G078800.t1"; gene_id "Ledus.S2G078800"
Ledus.S2	AUGUSTUS	CDS	6057479	6058312	1	+	0	transcript_id "Ledus.S2G078800.t1"; gene_id "Ledus.S2G078800"
Ledus.S2	AUGUSTUS	exon	6057479	6058312	.	+	.	transcript_id "Ledus.S2G078800.t1"; gene_id "Ledus.S2G078800"
Ledus.S2	AUGUSTUS	stop_codon	6058313	6058315	.	+	0	transcript_id "Ledus.S2G078800.t1"; gene_id "Ledus.S2G078800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3518.t1 is derived from g953.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9030297	9031128	.	-	.	Ledus.S1G093900
Ledus.S1	AUGUSTUS	transcript	9030297	9031128	.	-	.	transcript_id "Ledus.S1G093900.t1"; gene_id "Ledus.S1G093900"
Ledus.S1	AUGUSTUS	stop_codon	9030294	9030296	.	-	0	transcript_id "Ledus.S1G093900.t1"; gene_id "Ledus.S1G093900"
Ledus.S1	AUGUSTUS	CDS	9030297	9030928	0.96	-	2	transcript_id "Ledus.S1G093900.t1"; gene_id "Ledus.S1G093900"
Ledus.S1	AUGUSTUS	exon	9030297	9030928	.	-	.	transcript_id "Ledus.S1G093900.t1"; gene_id "Ledus.S1G093900"
Ledus.S1	AUGUSTUS	intron	9030929	9031004	.	-	.	transcript_id "Ledus.S1G093900.t1"; gene_id "Ledus.S1G093900"
Ledus.S1	AUGUSTUS	CDS	9031005	9031128	0.95	-	0	transcript_id "Ledus.S1G093900.t1"; gene_id "Ledus.S1G093900"
Ledus.S1	AUGUSTUS	exon	9031005	9031128	.	-	.	transcript_id "Ledus.S1G093900.t1"; gene_id "Ledus.S1G093900"
Ledus.S1	AUGUSTUS	start_codon	9031126	9031128	.	-	0	transcript_id "Ledus.S1G093900.t1"; gene_id "Ledus.S1G093900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12853.t1 is derived from g11887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	227627	231233	.	-	.	Ledus.C11G001700
Ledus.C11	AUGUSTUS	transcript	227627	231233	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	stop_codon	227624	227626	.	-	0	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	CDS	227627	228754	0.64	-	0	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	exon	227627	228754	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	intron	228755	228875	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	CDS	228876	229020	0.38	-	1	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	exon	228876	229020	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	intron	229021	229182	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	CDS	229183	229219	0.86	-	2	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	exon	229183	229219	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	intron	229220	229360	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	CDS	229361	229421	1	-	0	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	exon	229361	229421	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	intron	229422	229505	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	CDS	229506	229592	1	-	0	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	exon	229506	229592	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	intron	229593	229710	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	CDS	229711	229776	0.91	-	0	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	exon	229711	229776	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	intron	229777	230028	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	CDS	230029	230118	1	-	0	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	exon	230029	230118	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	intron	230119	230197	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	CDS	230198	230278	1	-	0	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	exon	230198	230278	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	intron	230279	230356	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	CDS	230357	230434	1	-	0	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	exon	230357	230434	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	intron	230435	230545	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	CDS	230546	230636	1	-	1	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	exon	230546	230636	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	intron	230637	230776	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	CDS	230777	230924	1	-	2	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	exon	230777	230924	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	intron	230925	231121	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	CDS	231122	231233	1	-	0	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	exon	231122	231233	.	-	.	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
Ledus.C11	AUGUSTUS	start_codon	231231	231233	.	-	0	transcript_id "Ledus.C11G001700.t1"; gene_id "Ledus.C11G001700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1619.t1 is derived from g8480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11452351	11456035	.	-	.	Ledus.S2G150100
Ledus.S2	AUGUSTUS	transcript	11452351	11456035	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	stop_codon	11452348	11452350	.	-	0	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	CDS	11452351	11452610	0.95	-	2	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	exon	11452351	11452610	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	intron	11452611	11452719	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	CDS	11452720	11453121	0.6	-	2	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	exon	11452720	11453121	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	intron	11453122	11453229	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	CDS	11453230	11453324	0.64	-	1	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	exon	11453230	11453324	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	intron	11453325	11453427	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	CDS	11453428	11453540	0.65	-	0	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	exon	11453428	11453540	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	intron	11453541	11453667	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	CDS	11453668	11454030	0.73	-	0	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	exon	11453668	11454030	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	intron	11454031	11454212	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	CDS	11454213	11454390	1	-	1	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	exon	11454213	11454390	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	intron	11454391	11454578	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	CDS	11454579	11454722	1	-	1	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	exon	11454579	11454722	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	intron	11454723	11455089	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	CDS	11455090	11455364	0.98	-	0	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	exon	11455090	11455364	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	intron	11455365	11455477	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	CDS	11455478	11455701	0.65	-	2	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	exon	11455478	11455701	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	intron	11455702	11455890	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	CDS	11455891	11456035	0.36	-	0	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	exon	11455891	11456035	.	-	.	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
Ledus.S2	AUGUSTUS	start_codon	11456033	11456035	.	-	0	transcript_id "Ledus.S2G150100.t1"; gene_id "Ledus.S2G150100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg816.t1 is derived from g7677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5276414	5276641	.	+	.	Ledus.S2G069800
Ledus.S2	AUGUSTUS	transcript	5276414	5276641	.	+	.	transcript_id "Ledus.S2G069800.t1"; gene_id "Ledus.S2G069800"
Ledus.S2	AUGUSTUS	start_codon	5276414	5276416	.	+	0	transcript_id "Ledus.S2G069800.t1"; gene_id "Ledus.S2G069800"
Ledus.S2	AUGUSTUS	CDS	5276414	5276641	0.97	+	0	transcript_id "Ledus.S2G069800.t1"; gene_id "Ledus.S2G069800"
Ledus.S2	AUGUSTUS	exon	5276414	5276641	.	+	.	transcript_id "Ledus.S2G069800.t1"; gene_id "Ledus.S2G069800"
Ledus.S2	AUGUSTUS	stop_codon	5276642	5276644	.	+	0	transcript_id "Ledus.S2G069800.t1"; gene_id "Ledus.S2G069800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2979.t1 is derived from g414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5063364	5063882	.	-	.	Ledus.S1G040000
Ledus.S1	AUGUSTUS	transcript	5063364	5063882	.	-	.	transcript_id "Ledus.S1G040000.t1"; gene_id "Ledus.S1G040000"
Ledus.S1	AUGUSTUS	stop_codon	5063361	5063363	.	-	0	transcript_id "Ledus.S1G040000.t1"; gene_id "Ledus.S1G040000"
Ledus.S1	AUGUSTUS	CDS	5063364	5063882	0.88	-	0	transcript_id "Ledus.S1G040000.t1"; gene_id "Ledus.S1G040000"
Ledus.S1	AUGUSTUS	exon	5063364	5063882	.	-	.	transcript_id "Ledus.S1G040000.t1"; gene_id "Ledus.S1G040000"
Ledus.S1	AUGUSTUS	start_codon	5063880	5063882	.	-	0	transcript_id "Ledus.S1G040000.t1"; gene_id "Ledus.S1G040000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8824.t1 is derived from g9854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2171422	2173371	.	+	.	Ledus.S3G030100
Ledus.S3	AUGUSTUS	transcript	2171422	2173371	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	start_codon	2171422	2171424	.	+	0	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	CDS	2171422	2171669	0.66	+	0	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	exon	2171422	2171669	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	intron	2171670	2171757	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	CDS	2171758	2171884	1	+	1	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	exon	2171758	2171884	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	intron	2171885	2171981	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	CDS	2171982	2172020	1	+	0	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	exon	2171982	2172020	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	intron	2172021	2172180	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	CDS	2172181	2172277	1	+	0	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	exon	2172181	2172277	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	intron	2172278	2172445	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	CDS	2172446	2172534	1	+	2	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	exon	2172446	2172534	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	intron	2172535	2172663	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	CDS	2172664	2172739	1	+	0	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	exon	2172664	2172739	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	intron	2172740	2172826	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	CDS	2172827	2173257	1	+	2	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	exon	2172827	2173257	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	intron	2173258	2173350	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	CDS	2173351	2173371	0.79	+	0	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	exon	2173351	2173371	.	+	.	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
Ledus.S3	AUGUSTUS	stop_codon	2173372	2173374	.	+	0	transcript_id "Ledus.S3G030100.t1"; gene_id "Ledus.S3G030100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3670.t1 is derived from g1106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10591713	10592320	.	+	.	Ledus.S1G109100
Ledus.S1	AUGUSTUS	transcript	10591713	10592320	.	+	.	transcript_id "Ledus.S1G109100.t1"; gene_id "Ledus.S1G109100"
Ledus.S1	AUGUSTUS	start_codon	10591713	10591715	.	+	0	transcript_id "Ledus.S1G109100.t1"; gene_id "Ledus.S1G109100"
Ledus.S1	AUGUSTUS	CDS	10591713	10591715	1	+	0	transcript_id "Ledus.S1G109100.t1"; gene_id "Ledus.S1G109100"
Ledus.S1	AUGUSTUS	exon	10591713	10591715	.	+	.	transcript_id "Ledus.S1G109100.t1"; gene_id "Ledus.S1G109100"
Ledus.S1	AUGUSTUS	intron	10591716	10592037	.	+	.	transcript_id "Ledus.S1G109100.t1"; gene_id "Ledus.S1G109100"
Ledus.S1	AUGUSTUS	CDS	10592038	10592194	1	+	0	transcript_id "Ledus.S1G109100.t1"; gene_id "Ledus.S1G109100"
Ledus.S1	AUGUSTUS	exon	10592038	10592194	.	+	.	transcript_id "Ledus.S1G109100.t1"; gene_id "Ledus.S1G109100"
Ledus.S1	AUGUSTUS	intron	10592195	10592276	.	+	.	transcript_id "Ledus.S1G109100.t1"; gene_id "Ledus.S1G109100"
Ledus.S1	AUGUSTUS	CDS	10592277	10592320	1	+	2	transcript_id "Ledus.S1G109100.t1"; gene_id "Ledus.S1G109100"
Ledus.S1	AUGUSTUS	exon	10592277	10592320	.	+	.	transcript_id "Ledus.S1G109100.t1"; gene_id "Ledus.S1G109100"
Ledus.S1	AUGUSTUS	stop_codon	10592321	10592323	.	+	0	transcript_id "Ledus.S1G109100.t1"; gene_id "Ledus.S1G109100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7638.t1 is derived from g12309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4764670	4765809	.	-	.	Ledus.S5G041600
Ledus.S5	AUGUSTUS	transcript	4764670	4765809	.	-	.	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	stop_codon	4764667	4764669	.	-	0	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	CDS	4764670	4764720	0.9	-	0	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	exon	4764670	4764720	.	-	.	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	intron	4764721	4764857	.	-	.	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	CDS	4764858	4764954	0.91	-	1	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	exon	4764858	4764954	.	-	.	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	intron	4764955	4765089	.	-	.	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	CDS	4765090	4765193	0.94	-	0	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	exon	4765090	4765193	.	-	.	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	intron	4765194	4765284	.	-	.	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	CDS	4765285	4765809	0.54	-	0	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	exon	4765285	4765809	.	-	.	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
Ledus.S5	AUGUSTUS	start_codon	4765807	4765809	.	-	0	transcript_id "Ledus.S5G041600.t1"; gene_id "Ledus.S5G041600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5933.t1 is derived from g3376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27898485	27901636	.	+	.	Ledus.S1G335400
Ledus.S1	AUGUSTUS	transcript	27898485	27901636	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	start_codon	27898485	27898487	.	+	0	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27898485	27898706	0.98	+	0	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27898485	27898706	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27898707	27898793	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27898794	27898856	1	+	0	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27898794	27898856	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27898857	27898928	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27898929	27899017	1	+	0	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27898929	27899017	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27899018	27899128	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27899129	27899180	1	+	1	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27899129	27899180	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27899181	27899260	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27899261	27899307	1	+	0	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27899261	27899307	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27899308	27899385	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27899386	27899449	1	+	1	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27899386	27899449	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27899450	27899538	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27899539	27899607	1	+	0	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27899539	27899607	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27899608	27899677	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27899678	27899800	1	+	0	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27899678	27899800	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27899801	27899890	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27899891	27899977	1	+	0	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27899891	27899977	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27899978	27900070	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27900071	27900191	1	+	0	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27900071	27900191	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27900192	27900272	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27900273	27900428	1	+	2	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27900273	27900428	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27900429	27900523	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27900524	27900622	0.83	+	2	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27900524	27900622	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27900623	27900704	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27900705	27901492	0.83	+	2	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27900705	27901492	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	intron	27901493	27901594	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	CDS	27901595	27901636	0.79	+	0	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	exon	27901595	27901636	.	+	.	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
Ledus.S1	AUGUSTUS	stop_codon	27901637	27901639	.	+	0	transcript_id "Ledus.S1G335400.t1"; gene_id "Ledus.S1G335400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4194.t1 is derived from g1630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15316259	15317370	.	-	.	Ledus.S1G161500
Ledus.S1	AUGUSTUS	transcript	15316259	15317370	.	-	.	transcript_id "Ledus.S1G161500.t1"; gene_id "Ledus.S1G161500"
Ledus.S1	AUGUSTUS	stop_codon	15316256	15316258	.	-	0	transcript_id "Ledus.S1G161500.t1"; gene_id "Ledus.S1G161500"
Ledus.S1	AUGUSTUS	CDS	15316259	15316488	0.63	-	2	transcript_id "Ledus.S1G161500.t1"; gene_id "Ledus.S1G161500"
Ledus.S1	AUGUSTUS	exon	15316259	15316488	.	-	.	transcript_id "Ledus.S1G161500.t1"; gene_id "Ledus.S1G161500"
Ledus.S1	AUGUSTUS	intron	15316489	15316650	.	-	.	transcript_id "Ledus.S1G161500.t1"; gene_id "Ledus.S1G161500"
Ledus.S1	AUGUSTUS	CDS	15316651	15316757	1	-	1	transcript_id "Ledus.S1G161500.t1"; gene_id "Ledus.S1G161500"
Ledus.S1	AUGUSTUS	exon	15316651	15316757	.	-	.	transcript_id "Ledus.S1G161500.t1"; gene_id "Ledus.S1G161500"
Ledus.S1	AUGUSTUS	intron	15316758	15316867	.	-	.	transcript_id "Ledus.S1G161500.t1"; gene_id "Ledus.S1G161500"
Ledus.S1	AUGUSTUS	CDS	15316868	15317370	0.37	-	0	transcript_id "Ledus.S1G161500.t1"; gene_id "Ledus.S1G161500"
Ledus.S1	AUGUSTUS	exon	15316868	15317370	.	-	.	transcript_id "Ledus.S1G161500.t1"; gene_id "Ledus.S1G161500"
Ledus.S1	AUGUSTUS	start_codon	15317368	15317370	.	-	0	transcript_id "Ledus.S1G161500.t1"; gene_id "Ledus.S1G161500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9692.t1 is derived from g10722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9061404	9062399	.	+	.	Ledus.S3G116900
Ledus.S3	AUGUSTUS	transcript	9061404	9062399	.	+	.	transcript_id "Ledus.S3G116900.t1"; gene_id "Ledus.S3G116900"
Ledus.S3	AUGUSTUS	start_codon	9061404	9061406	.	+	0	transcript_id "Ledus.S3G116900.t1"; gene_id "Ledus.S3G116900"
Ledus.S3	AUGUSTUS	CDS	9061404	9062399	0.98	+	0	transcript_id "Ledus.S3G116900.t1"; gene_id "Ledus.S3G116900"
Ledus.S3	AUGUSTUS	exon	9061404	9062399	.	+	.	transcript_id "Ledus.S3G116900.t1"; gene_id "Ledus.S3G116900"
Ledus.S3	AUGUSTUS	stop_codon	9062400	9062402	.	+	0	transcript_id "Ledus.S3G116900.t1"; gene_id "Ledus.S3G116900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6872.t1 is derived from g4316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34892389	34893868	.	-	.	Ledus.S1G429300
Ledus.S1	AUGUSTUS	transcript	34892389	34893868	.	-	.	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	stop_codon	34892386	34892388	.	-	0	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	CDS	34892389	34893226	0.99	-	1	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	exon	34892389	34893226	.	-	.	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	intron	34893227	34893305	.	-	.	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	CDS	34893306	34893578	1	-	1	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	exon	34893306	34893578	.	-	.	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	intron	34893579	34893663	.	-	.	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	CDS	34893664	34893761	1	-	0	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	exon	34893664	34893761	.	-	.	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	intron	34893762	34893856	.	-	.	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	CDS	34893857	34893868	1	-	0	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	exon	34893857	34893868	.	-	.	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
Ledus.S1	AUGUSTUS	start_codon	34893866	34893868	.	-	0	transcript_id "Ledus.S1G429300.t1"; gene_id "Ledus.S1G429300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg175.t1 is derived from g7036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	540133	543894	.	-	.	Ledus.S2G005700
Ledus.S2	AUGUSTUS	transcript	540133	543894	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	stop_codon	540130	540132	.	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	540133	540300	0.95	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	540133	540300	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	540301	540388	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	540389	540454	1	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	540389	540454	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	540455	540551	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	540552	540608	1	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	540552	540608	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	540609	540696	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	540697	540753	1	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	540697	540753	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	540754	540827	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	540828	540962	1	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	540828	540962	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	540963	541059	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	541060	541149	1	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	541060	541149	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	541150	541226	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	541227	541375	1	-	2	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	541227	541375	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	541376	541469	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	541470	541749	1	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	541470	541749	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	541750	541841	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	541842	541904	1	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	541842	541904	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	541905	542034	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	542035	542163	0.98	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	542035	542163	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	542164	542271	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	542272	542322	0.98	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	542272	542322	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	542323	542408	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	542409	542509	1	-	2	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	542409	542509	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	542510	542596	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	542597	542687	1	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	542597	542687	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	542688	542771	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	542772	542873	1	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	542772	542873	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	542874	542969	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	542970	542993	1	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	542970	542993	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	542994	543083	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	543084	543271	0.96	-	2	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	543084	543271	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	543272	543389	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	543390	543894	0.59	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	543390	543894	.	-	.	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	start_codon	543892	543894	.	-	0	transcript_id "Ledus.S2G005700.t1"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	transcript	540133	543894	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	stop_codon	540130	540132	.	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	540133	540300	0.92	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	540133	540300	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	540301	540388	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	540389	540454	1	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	540389	540454	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	540455	540551	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	540552	540608	1	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	540552	540608	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	540609	540696	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	540697	540753	1	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	540697	540753	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	540754	540827	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	540828	540962	1	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	540828	540962	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	540963	541059	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	541060	541149	1	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	541060	541149	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	541150	541226	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	541227	541375	1	-	2	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	541227	541375	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	541376	541469	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	541470	541749	1	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	541470	541749	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	541750	541841	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	541842	541904	1	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	541842	541904	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	541905	542034	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	542035	542191	0.45	-	1	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	542035	542191	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	542192	542271	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	542272	542322	0.45	-	1	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	542272	542322	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	542323	542408	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	542409	542509	0.57	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	542409	542509	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	542510	542600	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	542601	542687	0.57	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	542601	542687	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	542688	542771	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	542772	542873	1	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	542772	542873	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	542874	542969	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	542970	542993	1	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	542970	542993	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	542994	543083	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	543084	543271	0.97	-	2	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	543084	543271	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	intron	543272	543389	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	CDS	543390	543894	0.54	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	exon	543390	543894	.	-	.	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
Ledus.S2	AUGUSTUS	start_codon	543892	543894	.	-	0	transcript_id "Ledus.S2G005700.t2"; gene_id "Ledus.S2G005700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg164.t1 is derived from g7025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	424947	425153	.	+	.	Ledus.S2G004600
Ledus.S2	AUGUSTUS	transcript	424947	425153	.	+	.	transcript_id "Ledus.S2G004600.t1"; gene_id "Ledus.S2G004600"
Ledus.S2	AUGUSTUS	start_codon	424947	424949	.	+	0	transcript_id "Ledus.S2G004600.t1"; gene_id "Ledus.S2G004600"
Ledus.S2	AUGUSTUS	CDS	424947	425153	0.87	+	0	transcript_id "Ledus.S2G004600.t1"; gene_id "Ledus.S2G004600"
Ledus.S2	AUGUSTUS	exon	424947	425153	.	+	.	transcript_id "Ledus.S2G004600.t1"; gene_id "Ledus.S2G004600"
Ledus.S2	AUGUSTUS	stop_codon	425154	425156	.	+	0	transcript_id "Ledus.S2G004600.t1"; gene_id "Ledus.S2G004600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3788.t1 is derived from g1224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12153771	12154435	.	+	.	Ledus.S1G120900
Ledus.S1	AUGUSTUS	transcript	12153771	12154435	.	+	.	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	start_codon	12153771	12153773	.	+	0	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	CDS	12153771	12153852	1	+	0	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	exon	12153771	12153852	.	+	.	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	intron	12153853	12153984	.	+	.	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	CDS	12153985	12154079	1	+	2	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	exon	12153985	12154079	.	+	.	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	intron	12154080	12154157	.	+	.	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	CDS	12154158	12154264	1	+	0	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	exon	12154158	12154264	.	+	.	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	intron	12154265	12154335	.	+	.	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	CDS	12154336	12154435	0.98	+	1	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	exon	12154336	12154435	.	+	.	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
Ledus.S1	AUGUSTUS	stop_codon	12154436	12154438	.	+	0	transcript_id "Ledus.S1G120900.t1"; gene_id "Ledus.S1G120900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8180.t1 is derived from g12851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9697936	9698513	.	-	.	Ledus.S5G095800
Ledus.S5	AUGUSTUS	transcript	9697936	9698513	.	-	.	transcript_id "Ledus.S5G095800.t1"; gene_id "Ledus.S5G095800"
Ledus.S5	AUGUSTUS	stop_codon	9697933	9697935	.	-	0	transcript_id "Ledus.S5G095800.t1"; gene_id "Ledus.S5G095800"
Ledus.S5	AUGUSTUS	CDS	9697936	9698006	1	-	2	transcript_id "Ledus.S5G095800.t1"; gene_id "Ledus.S5G095800"
Ledus.S5	AUGUSTUS	exon	9697936	9698006	.	-	.	transcript_id "Ledus.S5G095800.t1"; gene_id "Ledus.S5G095800"
Ledus.S5	AUGUSTUS	intron	9698007	9698099	.	-	.	transcript_id "Ledus.S5G095800.t1"; gene_id "Ledus.S5G095800"
Ledus.S5	AUGUSTUS	CDS	9698100	9698306	1	-	2	transcript_id "Ledus.S5G095800.t1"; gene_id "Ledus.S5G095800"
Ledus.S5	AUGUSTUS	exon	9698100	9698306	.	-	.	transcript_id "Ledus.S5G095800.t1"; gene_id "Ledus.S5G095800"
Ledus.S5	AUGUSTUS	intron	9698307	9698398	.	-	.	transcript_id "Ledus.S5G095800.t1"; gene_id "Ledus.S5G095800"
Ledus.S5	AUGUSTUS	CDS	9698399	9698513	0.96	-	0	transcript_id "Ledus.S5G095800.t1"; gene_id "Ledus.S5G095800"
Ledus.S5	AUGUSTUS	exon	9698399	9698513	.	-	.	transcript_id "Ledus.S5G095800.t1"; gene_id "Ledus.S5G095800"
Ledus.S5	AUGUSTUS	start_codon	9698511	9698513	.	-	0	transcript_id "Ledus.S5G095800.t1"; gene_id "Ledus.S5G095800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10079.t1 is derived from g11109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12549534	12551081	.	-	.	Ledus.S3G155600
Ledus.S3	AUGUSTUS	transcript	12549534	12551081	.	-	.	transcript_id "Ledus.S3G155600.t1"; gene_id "Ledus.S3G155600"
Ledus.S3	AUGUSTUS	stop_codon	12549531	12549533	.	-	0	transcript_id "Ledus.S3G155600.t1"; gene_id "Ledus.S3G155600"
Ledus.S3	AUGUSTUS	CDS	12549534	12551081	0.99	-	0	transcript_id "Ledus.S3G155600.t1"; gene_id "Ledus.S3G155600"
Ledus.S3	AUGUSTUS	exon	12549534	12551081	.	-	.	transcript_id "Ledus.S3G155600.t1"; gene_id "Ledus.S3G155600"
Ledus.S3	AUGUSTUS	start_codon	12551079	12551081	.	-	0	transcript_id "Ledus.S3G155600.t1"; gene_id "Ledus.S3G155600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8475.t1 is derived from g13147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12097057	12108204	.	-	.	Ledus.S5G125300
Ledus.S5	AUGUSTUS	transcript	12097057	12108204	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	stop_codon	12097054	12097056	.	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12097057	12097605	1	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12097057	12097605	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12097606	12097701	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12097702	12098491	1	-	1	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12097702	12098491	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12098492	12098624	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12098625	12098765	1	-	1	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12098625	12098765	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12098766	12098912	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12098913	12099268	1	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12098913	12099268	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12099269	12099415	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12099416	12099614	1	-	1	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12099416	12099614	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12099615	12099718	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12099719	12099921	1	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12099719	12099921	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12099922	12100081	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12100082	12100287	1	-	2	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12100082	12100287	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12100288	12100548	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12100549	12100690	1	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12100549	12100690	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12100691	12100776	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12100777	12100847	1	-	2	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12100777	12100847	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12100848	12100943	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12100944	12101043	1	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12100944	12101043	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12101044	12101156	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12101157	12101369	1	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12101157	12101369	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12101370	12101649	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12101650	12101797	1	-	1	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12101650	12101797	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12101798	12102030	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12102031	12102119	0.99	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12102031	12102119	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12102120	12102229	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12102230	12102520	0.99	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12102230	12102520	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12102521	12102677	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12102678	12102903	0.3	-	1	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12102678	12102903	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12102904	12103033	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12103034	12103197	0.29	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12103034	12103197	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12103198	12103387	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12103388	12103440	0.89	-	2	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12103388	12103440	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12103441	12103774	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12103775	12104000	0.75	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12103775	12104000	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12104001	12104165	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12104166	12104492	1	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12104166	12104492	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12104493	12104620	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12104621	12104780	1	-	1	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12104621	12104780	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12104781	12104988	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12104989	12105158	1	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12104989	12105158	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12105159	12105242	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12105243	12105312	0.83	-	1	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12105243	12105312	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12105313	12105483	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12105484	12105602	0.48	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12105484	12105602	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12105603	12105959	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12105960	12106040	0.94	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12105960	12106040	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12106041	12106194	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12106195	12106405	1	-	1	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12106195	12106405	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12106406	12106491	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12106492	12106651	0.99	-	2	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12106492	12106651	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12106652	12106754	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12106755	12106808	0.95	-	2	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12106755	12106808	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12106809	12107028	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12107029	12107116	0.77	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12107029	12107116	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12107117	12107211	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12107212	12107337	1	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12107212	12107337	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12107338	12107546	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12107547	12107612	1	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12107547	12107612	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12107613	12107708	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12107709	12107881	1	-	2	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12107709	12107881	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12107882	12107965	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12107966	12108021	1	-	1	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12107966	12108021	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	intron	12108022	12108106	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	CDS	12108107	12108204	1	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	exon	12108107	12108204	.	-	.	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
Ledus.S5	AUGUSTUS	start_codon	12108202	12108204	.	-	0	transcript_id "Ledus.S5G125300.t1"; gene_id "Ledus.S5G125300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7246.t1 is derived from g11917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	287021	288164	.	-	.	Ledus.S5G002400
Ledus.S5	AUGUSTUS	transcript	287021	288164	.	-	.	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	stop_codon	287018	287020	.	-	0	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	CDS	287021	287089	0.99	-	0	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	exon	287021	287089	.	-	.	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	intron	287090	287169	.	-	.	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	CDS	287170	287265	1	-	0	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	exon	287170	287265	.	-	.	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	intron	287266	287364	.	-	.	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	CDS	287365	287448	1	-	0	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	exon	287365	287448	.	-	.	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	intron	287449	287569	.	-	.	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	CDS	287570	287670	0.99	-	2	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	exon	287570	287670	.	-	.	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	intron	287671	287767	.	-	.	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	CDS	287768	288164	0.51	-	0	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	exon	287768	288164	.	-	.	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
Ledus.S5	AUGUSTUS	start_codon	288162	288164	.	-	0	transcript_id "Ledus.S5G002400.t1"; gene_id "Ledus.S5G002400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12190.t1 is derived from g5809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10229500	10232090	.	-	.	Ledus.S4G134600
Ledus.S4	AUGUSTUS	transcript	10229500	10232090	.	-	.	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	stop_codon	10229497	10229499	.	-	0	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	CDS	10229500	10229916	0.79	-	0	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	exon	10229500	10229916	.	-	.	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	intron	10229917	10230139	.	-	.	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	CDS	10230140	10230312	1	-	2	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	exon	10230140	10230312	.	-	.	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	intron	10230313	10230456	.	-	.	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	CDS	10230457	10230592	1	-	0	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	exon	10230457	10230592	.	-	.	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	intron	10230593	10230713	.	-	.	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	CDS	10230714	10231181	0.71	-	0	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	exon	10230714	10231181	.	-	.	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	intron	10231182	10231292	.	-	.	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	CDS	10231293	10231612	0.71	-	2	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	exon	10231293	10231612	.	-	.	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	intron	10231613	10231738	.	-	.	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	CDS	10231739	10232090	1	-	0	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	exon	10231739	10232090	.	-	.	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
Ledus.S4	AUGUSTUS	start_codon	10232088	10232090	.	-	0	transcript_id "Ledus.S4G134600.t1"; gene_id "Ledus.S4G134600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3413.t1 is derived from g848.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8146292	8149684	.	-	.	Ledus.S1G083400
Ledus.S1	AUGUSTUS	transcript	8146292	8149684	.	-	.	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	stop_codon	8146289	8146291	.	-	0	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	CDS	8146292	8146365	0.99	-	2	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	exon	8146292	8146365	.	-	.	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	intron	8146366	8146652	.	-	.	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	CDS	8146653	8148244	0.88	-	1	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	exon	8146653	8148244	.	-	.	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	intron	8148245	8148354	.	-	.	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	CDS	8148355	8148515	1	-	0	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	exon	8148355	8148515	.	-	.	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	intron	8148516	8148606	.	-	.	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	CDS	8148607	8148726	1	-	0	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	exon	8148607	8148726	.	-	.	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	intron	8148727	8148823	.	-	.	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	CDS	8148824	8148880	0.72	-	0	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	exon	8148824	8148880	.	-	.	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	intron	8148881	8149348	.	-	.	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	CDS	8149349	8149684	0.52	-	0	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	exon	8149349	8149684	.	-	.	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
Ledus.S1	AUGUSTUS	start_codon	8149682	8149684	.	-	0	transcript_id "Ledus.S1G083400.t1"; gene_id "Ledus.S1G083400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4265.t1 is derived from g1701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15818608	15822481	.	+	.	Ledus.S1G168600
Ledus.S1	AUGUSTUS	transcript	15818608	15822481	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	start_codon	15818608	15818610	.	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15818608	15818610	0.81	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15818608	15818610	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15818611	15818714	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15818715	15818787	0.81	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15818715	15818787	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15818788	15818865	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15818866	15818996	1	+	2	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15818866	15818996	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15818997	15819077	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15819078	15819137	1	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15819078	15819137	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15819138	15819265	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15819266	15819322	0.97	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15819266	15819322	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15819323	15819445	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15819446	15819778	0.97	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15819446	15819778	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15819779	15819877	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15819878	15819998	1	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15819878	15819998	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15819999	15820229	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15820230	15820294	0.79	+	2	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15820230	15820294	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15820295	15820373	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15820374	15820467	0.38	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15820374	15820467	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15820468	15820567	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15820568	15820656	0.51	+	2	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15820568	15820656	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15820657	15820762	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15820763	15820894	0.74	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15820763	15820894	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15820895	15821059	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15821060	15821152	1	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15821060	15821152	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15821153	15821237	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15821238	15821308	1	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15821238	15821308	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15821309	15821468	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15821469	15821692	1	+	1	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15821469	15821692	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15821693	15821779	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15821780	15821823	1	+	2	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15821780	15821823	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15821824	15821908	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15821909	15821958	1	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15821909	15821958	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15821959	15822047	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15822048	15822093	1	+	1	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15822048	15822093	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15822094	15822165	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15822166	15822216	1	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15822166	15822216	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15822217	15822328	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15822329	15822481	0.97	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15822329	15822481	.	+	.	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	stop_codon	15822482	15822484	.	+	0	transcript_id "Ledus.S1G168600.t1"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	transcript	15818608	15822481	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	start_codon	15818608	15818610	.	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15818608	15818610	0.74	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15818608	15818610	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15818611	15818714	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15818715	15818787	0.74	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15818715	15818787	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15818788	15818865	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15818866	15818996	1	+	2	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15818866	15818996	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15818997	15819077	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15819078	15819137	1	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15819078	15819137	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15819138	15819296	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15819297	15819322	0.49	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15819297	15819322	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15819323	15819420	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15819421	15819778	0.49	+	1	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15819421	15819778	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15819779	15819877	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15819878	15819998	1	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15819878	15819998	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15819999	15820229	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15820230	15820294	0.76	+	2	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15820230	15820294	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15820295	15820373	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15820374	15820467	0.37	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15820374	15820467	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15820468	15820567	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15820568	15820656	0.52	+	2	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15820568	15820656	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15820657	15820762	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15820763	15820894	0.74	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15820763	15820894	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15820895	15821059	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15821060	15821152	1	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15821060	15821152	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15821153	15821237	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15821238	15821308	1	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15821238	15821308	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15821309	15821468	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15821469	15821692	1	+	1	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15821469	15821692	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15821693	15821779	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15821780	15821823	1	+	2	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15821780	15821823	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15821824	15821908	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15821909	15821958	1	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15821909	15821958	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15821959	15822047	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15822048	15822093	1	+	1	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15822048	15822093	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15822094	15822165	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15822166	15822216	1	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15822166	15822216	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	intron	15822217	15822328	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	CDS	15822329	15822481	1	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	exon	15822329	15822481	.	+	.	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
Ledus.S1	AUGUSTUS	stop_codon	15822482	15822484	.	+	0	transcript_id "Ledus.S1G168600.t2"; gene_id "Ledus.S1G168600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1894.t1 is derived from g8757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13205536	13207612	.	+	.	Ledus.S2G177600
Ledus.S2	AUGUSTUS	transcript	13205536	13207612	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	start_codon	13205536	13205538	.	+	0	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	CDS	13205536	13205612	0.37	+	0	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	exon	13205536	13205612	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	intron	13205613	13205805	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	CDS	13205806	13206101	0.89	+	1	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	exon	13205806	13206101	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	intron	13206102	13206276	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	CDS	13206277	13206359	1	+	2	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	exon	13206277	13206359	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	intron	13206360	13206519	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	CDS	13206520	13206579	1	+	0	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	exon	13206520	13206579	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	intron	13206580	13206794	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	CDS	13206795	13206903	1	+	0	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	exon	13206795	13206903	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	intron	13206904	13206992	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	CDS	13206993	13207045	1	+	2	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	exon	13206993	13207045	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	intron	13207046	13207165	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	CDS	13207166	13207246	1	+	0	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	exon	13207166	13207246	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	intron	13207247	13207342	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	CDS	13207343	13207455	1	+	0	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	exon	13207343	13207455	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	intron	13207456	13207551	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	CDS	13207552	13207612	1	+	1	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	exon	13207552	13207612	.	+	.	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
Ledus.S2	AUGUSTUS	stop_codon	13207613	13207615	.	+	0	transcript_id "Ledus.S2G177600.t1"; gene_id "Ledus.S2G177600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3128.t1 is derived from g563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6156882	6159432	.	+	.	Ledus.S1G054900
Ledus.S1	AUGUSTUS	transcript	6156882	6159432	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	start_codon	6156882	6156884	.	+	0	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	CDS	6156882	6157015	0.4	+	0	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	exon	6156882	6157015	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	intron	6157016	6157096	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	CDS	6157097	6157651	0.54	+	1	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	exon	6157097	6157651	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	intron	6157652	6157758	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	CDS	6157759	6157878	1	+	1	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	exon	6157759	6157878	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	intron	6157879	6158014	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	CDS	6158015	6158147	1	+	1	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	exon	6158015	6158147	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	intron	6158148	6158295	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	CDS	6158296	6158463	1	+	0	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	exon	6158296	6158463	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	intron	6158464	6158552	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	CDS	6158553	6158610	0.44	+	0	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	exon	6158553	6158610	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	intron	6158611	6158812	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	CDS	6158813	6158897	0.85	+	2	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	exon	6158813	6158897	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	intron	6158898	6159257	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	CDS	6159258	6159279	0.88	+	1	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	exon	6159258	6159279	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	intron	6159280	6159378	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	CDS	6159379	6159432	0.88	+	0	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	exon	6159379	6159432	.	+	.	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
Ledus.S1	AUGUSTUS	stop_codon	6159433	6159435	.	+	0	transcript_id "Ledus.S1G054900.t1"; gene_id "Ledus.S1G054900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8742.t1 is derived from g9772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1747268	1748134	.	+	.	Ledus.S3G021900
Ledus.S3	AUGUSTUS	transcript	1747268	1748134	.	+	.	transcript_id "Ledus.S3G021900.t1"; gene_id "Ledus.S3G021900"
Ledus.S3	AUGUSTUS	start_codon	1747268	1747270	.	+	0	transcript_id "Ledus.S3G021900.t1"; gene_id "Ledus.S3G021900"
Ledus.S3	AUGUSTUS	CDS	1747268	1748134	0.97	+	0	transcript_id "Ledus.S3G021900.t1"; gene_id "Ledus.S3G021900"
Ledus.S3	AUGUSTUS	exon	1747268	1748134	.	+	.	transcript_id "Ledus.S3G021900.t1"; gene_id "Ledus.S3G021900"
Ledus.S3	AUGUSTUS	stop_codon	1748135	1748137	.	+	0	transcript_id "Ledus.S3G021900.t1"; gene_id "Ledus.S3G021900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9670.t1 is derived from g10700.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8966990	8969776	.	+	.	Ledus.S3G114700
Ledus.S3	AUGUSTUS	transcript	8966990	8969776	.	+	.	transcript_id "Ledus.S3G114700.t1"; gene_id "Ledus.S3G114700"
Ledus.S3	AUGUSTUS	start_codon	8966990	8966992	.	+	0	transcript_id "Ledus.S3G114700.t1"; gene_id "Ledus.S3G114700"
Ledus.S3	AUGUSTUS	CDS	8966990	8969776	1	+	0	transcript_id "Ledus.S3G114700.t1"; gene_id "Ledus.S3G114700"
Ledus.S3	AUGUSTUS	exon	8966990	8969776	.	+	.	transcript_id "Ledus.S3G114700.t1"; gene_id "Ledus.S3G114700"
Ledus.S3	AUGUSTUS	stop_codon	8969777	8969779	.	+	0	transcript_id "Ledus.S3G114700.t1"; gene_id "Ledus.S3G114700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10173.t1 is derived from g11203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13444562	13445542	.	-	.	Ledus.S3G165000
Ledus.S3	AUGUSTUS	transcript	13444562	13445542	.	-	.	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	stop_codon	13444559	13444561	.	-	0	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	CDS	13444562	13444855	1	-	0	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	exon	13444562	13444855	.	-	.	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	intron	13444856	13444984	.	-	.	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	CDS	13444985	13445098	1	-	0	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	exon	13444985	13445098	.	-	.	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	intron	13445099	13445198	.	-	.	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	CDS	13445199	13445309	0.99	-	0	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	exon	13445199	13445309	.	-	.	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	intron	13445310	13445434	.	-	.	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	CDS	13445435	13445542	0.75	-	0	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	exon	13445435	13445542	.	-	.	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
Ledus.S3	AUGUSTUS	start_codon	13445540	13445542	.	-	0	transcript_id "Ledus.S3G165000.t1"; gene_id "Ledus.S3G165000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1686.t1 is derived from g8547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11840035	11842122	.	+	.	Ledus.S2G156800
Ledus.S2	AUGUSTUS	transcript	11840035	11842122	.	+	.	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	start_codon	11840035	11840037	.	+	0	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	CDS	11840035	11840152	0.69	+	0	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	exon	11840035	11840152	.	+	.	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	intron	11840153	11840254	.	+	.	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	CDS	11840255	11840472	0.86	+	2	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	exon	11840255	11840472	.	+	.	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	intron	11840473	11840560	.	+	.	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	CDS	11840561	11841123	0.78	+	0	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	exon	11840561	11841123	.	+	.	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	intron	11841124	11841221	.	+	.	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	CDS	11841222	11842122	0.97	+	1	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	exon	11841222	11842122	.	+	.	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
Ledus.S2	AUGUSTUS	stop_codon	11842123	11842125	.	+	0	transcript_id "Ledus.S2G156800.t1"; gene_id "Ledus.S2G156800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3570.t1 is derived from g1006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9693442	9693804	.	-	.	Ledus.S1G099100
Ledus.S1	AUGUSTUS	transcript	9693442	9693804	.	-	.	transcript_id "Ledus.S1G099100.t1"; gene_id "Ledus.S1G099100"
Ledus.S1	AUGUSTUS	stop_codon	9693439	9693441	.	-	0	transcript_id "Ledus.S1G099100.t1"; gene_id "Ledus.S1G099100"
Ledus.S1	AUGUSTUS	CDS	9693442	9693804	0.97	-	0	transcript_id "Ledus.S1G099100.t1"; gene_id "Ledus.S1G099100"
Ledus.S1	AUGUSTUS	exon	9693442	9693804	.	-	.	transcript_id "Ledus.S1G099100.t1"; gene_id "Ledus.S1G099100"
Ledus.S1	AUGUSTUS	start_codon	9693802	9693804	.	-	0	transcript_id "Ledus.S1G099100.t1"; gene_id "Ledus.S1G099100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4214.t1 is derived from g1650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15605468	15610328	.	-	.	Ledus.S1G163500
Ledus.S1	AUGUSTUS	transcript	15605468	15610328	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	stop_codon	15605465	15605467	.	-	0	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	CDS	15605468	15606382	0.96	-	0	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	exon	15605468	15606382	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	intron	15606383	15606534	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	CDS	15606535	15606600	1	-	0	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	exon	15606535	15606600	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	intron	15606601	15606701	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	CDS	15606702	15606767	1	-	0	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	exon	15606702	15606767	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	intron	15606768	15607101	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	CDS	15607102	15607179	1	-	0	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	exon	15607102	15607179	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	intron	15607180	15607293	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	CDS	15607294	15607629	0.99	-	0	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	exon	15607294	15607629	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	intron	15607630	15608595	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	CDS	15608596	15609342	0.97	-	0	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	exon	15608596	15609342	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	intron	15609343	15609430	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	CDS	15609431	15609448	1	-	0	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	exon	15609431	15609448	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	intron	15609449	15609516	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	CDS	15609517	15609556	0.92	-	1	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	exon	15609517	15609556	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	intron	15609557	15609751	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	CDS	15609752	15609785	1	-	2	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	exon	15609752	15609785	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	intron	15609786	15610177	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	CDS	15610178	15610328	0.37	-	0	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	exon	15610178	15610328	.	-	.	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
Ledus.S1	AUGUSTUS	start_codon	15610326	15610328	.	-	0	transcript_id "Ledus.S1G163500.t1"; gene_id "Ledus.S1G163500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg253.t1 is derived from g7114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1172671	1175495	.	-	.	Ledus.S2G013500
Ledus.S2	AUGUSTUS	transcript	1172671	1175495	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	stop_codon	1172668	1172670	.	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1172671	1172739	1	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1172671	1172739	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1172740	1172830	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1172831	1172872	1	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1172831	1172872	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1172873	1172961	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1172962	1173018	1	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1172962	1173018	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1173019	1173103	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1173104	1173154	1	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1173104	1173154	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1173155	1173219	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1173220	1173318	1	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1173220	1173318	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1173319	1173408	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1173409	1173486	1	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1173409	1173486	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1173487	1173609	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1173610	1173692	0.97	-	2	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1173610	1173692	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1173693	1173820	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1173821	1173920	1	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1173821	1173920	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1173921	1174018	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1174019	1174090	0.74	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1174019	1174090	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1174091	1174199	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1174200	1174301	1	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1174200	1174301	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1174302	1174378	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1174379	1174512	1	-	2	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1174379	1174512	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1174513	1174620	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1174621	1174708	1	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1174621	1174708	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1174709	1174777	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1174778	1174891	0.94	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1174778	1174891	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1174892	1174996	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1174997	1175056	0.94	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1174997	1175056	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1175057	1175144	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1175145	1175273	1	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1175145	1175273	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	intron	1175274	1175351	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	CDS	1175352	1175495	1	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	exon	1175352	1175495	.	-	.	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
Ledus.S2	AUGUSTUS	start_codon	1175493	1175495	.	-	0	transcript_id "Ledus.S2G013500.t1"; gene_id "Ledus.S2G013500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8911.t1 is derived from g9941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3071848	3072558	.	+	.	Ledus.S3G038800
Ledus.S3	AUGUSTUS	transcript	3071848	3072558	.	+	.	transcript_id "Ledus.S3G038800.t1"; gene_id "Ledus.S3G038800"
Ledus.S3	AUGUSTUS	start_codon	3071848	3071850	.	+	0	transcript_id "Ledus.S3G038800.t1"; gene_id "Ledus.S3G038800"
Ledus.S3	AUGUSTUS	CDS	3071848	3072558	1	+	0	transcript_id "Ledus.S3G038800.t1"; gene_id "Ledus.S3G038800"
Ledus.S3	AUGUSTUS	exon	3071848	3072558	.	+	.	transcript_id "Ledus.S3G038800.t1"; gene_id "Ledus.S3G038800"
Ledus.S3	AUGUSTUS	stop_codon	3072559	3072561	.	+	0	transcript_id "Ledus.S3G038800.t1"; gene_id "Ledus.S3G038800"
# This transcript jg264.t2 is derived from g7125.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg265.t1 is derived from g7126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1290606	1295512	.	-	.	Ledus.S2G014700
Ledus.S2	AUGUSTUS	transcript	1290606	1295512	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	stop_codon	1290603	1290605	.	-	0	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1290606	1290836	0.95	-	0	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1290606	1290836	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	intron	1290837	1290942	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1290943	1291140	0.99	-	0	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1290943	1291140	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	intron	1291141	1291237	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1291238	1291557	1	-	2	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1291238	1291557	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	intron	1291558	1291752	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1291753	1291880	1	-	1	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1291753	1291880	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	intron	1291881	1292051	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1292052	1292208	1	-	2	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1292052	1292208	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	intron	1292209	1292449	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1292450	1292599	1	-	2	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1292450	1292599	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	intron	1292600	1292697	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1292698	1292929	0.92	-	0	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1292698	1292929	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	intron	1292930	1293059	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1293060	1293263	1	-	0	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1293060	1293263	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	intron	1293264	1293427	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1293428	1293535	1	-	0	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1293428	1293535	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	intron	1293536	1293692	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1293693	1293883	0.98	-	2	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1293693	1293883	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	intron	1293884	1294010	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1294011	1294149	0.98	-	0	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1294011	1294149	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	intron	1294150	1294282	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1294283	1295244	0.99	-	2	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1294283	1295244	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	intron	1295245	1295433	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	CDS	1295434	1295512	0.99	-	0	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	exon	1295434	1295512	.	-	.	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
Ledus.S2	AUGUSTUS	start_codon	1295510	1295512	.	-	0	transcript_id "Ledus.S2G014700.t1"; gene_id "Ledus.S2G014700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7384.t1 is derived from g12055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1953282	1954469	.	+	.	Ledus.S5G016200
Ledus.S5	AUGUSTUS	transcript	1953282	1954469	.	+	.	transcript_id "Ledus.S5G016200.t1"; gene_id "Ledus.S5G016200"
Ledus.S5	AUGUSTUS	start_codon	1953282	1953284	.	+	0	transcript_id "Ledus.S5G016200.t1"; gene_id "Ledus.S5G016200"
Ledus.S5	AUGUSTUS	CDS	1953282	1954469	0.72	+	0	transcript_id "Ledus.S5G016200.t1"; gene_id "Ledus.S5G016200"
Ledus.S5	AUGUSTUS	exon	1953282	1954469	.	+	.	transcript_id "Ledus.S5G016200.t1"; gene_id "Ledus.S5G016200"
Ledus.S5	AUGUSTUS	stop_codon	1954470	1954472	.	+	0	transcript_id "Ledus.S5G016200.t1"; gene_id "Ledus.S5G016200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5279.t1 is derived from g2718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22838938	22840101	.	+	.	Ledus.S1G270000
Ledus.S1	AUGUSTUS	transcript	22838938	22840101	.	+	.	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	start_codon	22838938	22838940	.	+	0	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	CDS	22838938	22839051	0.58	+	0	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	exon	22838938	22839051	.	+	.	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	intron	22839052	22839135	.	+	.	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	CDS	22839136	22839268	0.93	+	0	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	exon	22839136	22839268	.	+	.	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	intron	22839269	22839339	.	+	.	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	CDS	22839340	22839524	1	+	2	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	exon	22839340	22839524	.	+	.	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	intron	22839525	22839597	.	+	.	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	CDS	22839598	22839818	0.94	+	0	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	exon	22839598	22839818	.	+	.	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	intron	22839819	22839911	.	+	.	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	CDS	22839912	22840101	0.98	+	1	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	exon	22839912	22840101	.	+	.	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
Ledus.S1	AUGUSTUS	stop_codon	22840102	22840104	.	+	0	transcript_id "Ledus.S1G270000.t1"; gene_id "Ledus.S1G270000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8868.t1 is derived from g9898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2603311	2604708	.	+	.	Ledus.S3G034500
Ledus.S3	AUGUSTUS	transcript	2603311	2604708	.	+	.	transcript_id "Ledus.S3G034500.t1"; gene_id "Ledus.S3G034500"
Ledus.S3	AUGUSTUS	start_codon	2603311	2603313	.	+	0	transcript_id "Ledus.S3G034500.t1"; gene_id "Ledus.S3G034500"
Ledus.S3	AUGUSTUS	CDS	2603311	2604708	1	+	0	transcript_id "Ledus.S3G034500.t1"; gene_id "Ledus.S3G034500"
Ledus.S3	AUGUSTUS	exon	2603311	2604708	.	+	.	transcript_id "Ledus.S3G034500.t1"; gene_id "Ledus.S3G034500"
Ledus.S3	AUGUSTUS	stop_codon	2604709	2604711	.	+	0	transcript_id "Ledus.S3G034500.t1"; gene_id "Ledus.S3G034500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10337.t1 is derived from g11367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14321454	14322142	.	+	.	Ledus.S3G181400
Ledus.S3	AUGUSTUS	transcript	14321454	14322142	.	+	.	transcript_id "Ledus.S3G181400.t1"; gene_id "Ledus.S3G181400"
Ledus.S3	AUGUSTUS	start_codon	14321454	14321456	.	+	0	transcript_id "Ledus.S3G181400.t1"; gene_id "Ledus.S3G181400"
Ledus.S3	AUGUSTUS	CDS	14321454	14321456	0.98	+	0	transcript_id "Ledus.S3G181400.t1"; gene_id "Ledus.S3G181400"
Ledus.S3	AUGUSTUS	exon	14321454	14321456	.	+	.	transcript_id "Ledus.S3G181400.t1"; gene_id "Ledus.S3G181400"
Ledus.S3	AUGUSTUS	intron	14321457	14321549	.	+	.	transcript_id "Ledus.S3G181400.t1"; gene_id "Ledus.S3G181400"
Ledus.S3	AUGUSTUS	CDS	14321550	14321560	1	+	0	transcript_id "Ledus.S3G181400.t1"; gene_id "Ledus.S3G181400"
Ledus.S3	AUGUSTUS	exon	14321550	14321560	.	+	.	transcript_id "Ledus.S3G181400.t1"; gene_id "Ledus.S3G181400"
Ledus.S3	AUGUSTUS	intron	14321561	14321946	.	+	.	transcript_id "Ledus.S3G181400.t1"; gene_id "Ledus.S3G181400"
Ledus.S3	AUGUSTUS	CDS	14321947	14322142	0.7	+	1	transcript_id "Ledus.S3G181400.t1"; gene_id "Ledus.S3G181400"
Ledus.S3	AUGUSTUS	exon	14321947	14322142	.	+	.	transcript_id "Ledus.S3G181400.t1"; gene_id "Ledus.S3G181400"
Ledus.S3	AUGUSTUS	stop_codon	14322143	14322145	.	+	0	transcript_id "Ledus.S3G181400.t1"; gene_id "Ledus.S3G181400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4819.t1 is derived from g2257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19943393	19945145	.	-	.	Ledus.S1G224000
Ledus.S1	AUGUSTUS	transcript	19943393	19945145	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	stop_codon	19943390	19943392	.	-	0	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	CDS	19943393	19943467	0.97	-	0	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	exon	19943393	19943467	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	intron	19943468	19943589	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	CDS	19943590	19943670	0.99	-	0	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	exon	19943590	19943670	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	intron	19943671	19943754	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	CDS	19943755	19943802	1	-	0	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	exon	19943755	19943802	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	intron	19943803	19943878	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	CDS	19943879	19944038	1	-	1	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	exon	19943879	19944038	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	intron	19944039	19944123	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	CDS	19944124	19944275	1	-	0	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	exon	19944124	19944275	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	intron	19944276	19944368	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	CDS	19944369	19944448	1	-	2	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	exon	19944369	19944448	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	intron	19944449	19944554	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	CDS	19944555	19944627	0.96	-	0	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	exon	19944555	19944627	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	intron	19944628	19944817	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	CDS	19944818	19944867	1	-	2	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	exon	19944818	19944867	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	intron	19944868	19945009	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	CDS	19945010	19945145	0.76	-	0	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	exon	19945010	19945145	.	-	.	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
Ledus.S1	AUGUSTUS	start_codon	19945143	19945145	.	-	0	transcript_id "Ledus.S1G224000.t1"; gene_id "Ledus.S1G224000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg292.t1 is derived from g7153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1453674	1456261	.	+	.	Ledus.S2G017400
Ledus.S2	AUGUSTUS	transcript	1453674	1456261	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	start_codon	1453674	1453676	.	+	0	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1453674	1453770	0.97	+	0	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1453674	1453770	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	intron	1453771	1453999	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1454000	1454036	0.99	+	2	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1454000	1454036	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	intron	1454037	1454097	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1454098	1454155	0.94	+	1	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1454098	1454155	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	intron	1454156	1454369	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1454370	1454772	1	+	0	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1454370	1454772	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	intron	1454773	1455427	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1455428	1455583	1	+	2	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1455428	1455583	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	intron	1455584	1455720	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1455721	1455948	1	+	2	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1455721	1455948	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	intron	1455949	1456052	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1456053	1456261	0.98	+	2	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1456053	1456261	.	+	.	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	stop_codon	1456262	1456264	.	+	0	transcript_id "Ledus.S2G017400.t1"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	transcript	1453674	1456261	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	start_codon	1453674	1453676	.	+	0	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1453674	1453770	0.86	+	0	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1453674	1453770	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	intron	1453771	1453999	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1454000	1454036	0.98	+	2	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1454000	1454036	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	intron	1454037	1454097	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1454098	1454155	0.93	+	1	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1454098	1454155	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	intron	1454156	1454381	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1454382	1454772	0.98	+	0	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1454382	1454772	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	intron	1454773	1455427	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1455428	1455583	1	+	2	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1455428	1455583	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	intron	1455584	1455720	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1455721	1455948	1	+	2	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1455721	1455948	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	intron	1455949	1456052	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	CDS	1456053	1456261	0.98	+	2	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	exon	1456053	1456261	.	+	.	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
Ledus.S2	AUGUSTUS	stop_codon	1456262	1456264	.	+	0	transcript_id "Ledus.S2G017400.t2"; gene_id "Ledus.S2G017400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9047.t1 is derived from g10077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4155895	4156197	.	+	.	Ledus.S3G052400
Ledus.S3	AUGUSTUS	transcript	4155895	4156197	.	+	.	transcript_id "Ledus.S3G052400.t1"; gene_id "Ledus.S3G052400"
Ledus.S3	AUGUSTUS	start_codon	4155895	4155897	.	+	0	transcript_id "Ledus.S3G052400.t1"; gene_id "Ledus.S3G052400"
Ledus.S3	AUGUSTUS	CDS	4155895	4156197	0.77	+	0	transcript_id "Ledus.S3G052400.t1"; gene_id "Ledus.S3G052400"
Ledus.S3	AUGUSTUS	exon	4155895	4156197	.	+	.	transcript_id "Ledus.S3G052400.t1"; gene_id "Ledus.S3G052400"
Ledus.S3	AUGUSTUS	stop_codon	4156198	4156200	.	+	0	transcript_id "Ledus.S3G052400.t1"; gene_id "Ledus.S3G052400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2378.t1 is derived from g9241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17741850	17743108	.	+	.	Ledus.S2G226000
Ledus.S2	AUGUSTUS	transcript	17741850	17743108	.	+	.	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	start_codon	17741850	17741852	.	+	0	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	CDS	17741850	17742086	0.97	+	0	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	exon	17741850	17742086	.	+	.	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	intron	17742087	17742170	.	+	.	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	CDS	17742171	17742362	1	+	0	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	exon	17742171	17742362	.	+	.	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	intron	17742363	17742437	.	+	.	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	CDS	17742438	17742618	1	+	0	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	exon	17742438	17742618	.	+	.	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	intron	17742619	17742698	.	+	.	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	CDS	17742699	17743108	0.99	+	2	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	exon	17742699	17743108	.	+	.	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
Ledus.S2	AUGUSTUS	stop_codon	17743109	17743111	.	+	0	transcript_id "Ledus.S2G226000.t1"; gene_id "Ledus.S2G226000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2612.t1 is derived from g45.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	440690	441296	.	-	.	Ledus.S1G003300
Ledus.S1	AUGUSTUS	transcript	440690	441296	.	-	.	transcript_id "Ledus.S1G003300.t1"; gene_id "Ledus.S1G003300"
Ledus.S1	AUGUSTUS	stop_codon	440687	440689	.	-	0	transcript_id "Ledus.S1G003300.t1"; gene_id "Ledus.S1G003300"
Ledus.S1	AUGUSTUS	CDS	440690	440810	1	-	1	transcript_id "Ledus.S1G003300.t1"; gene_id "Ledus.S1G003300"
Ledus.S1	AUGUSTUS	exon	440690	440810	.	-	.	transcript_id "Ledus.S1G003300.t1"; gene_id "Ledus.S1G003300"
Ledus.S1	AUGUSTUS	intron	440811	441129	.	-	.	transcript_id "Ledus.S1G003300.t1"; gene_id "Ledus.S1G003300"
Ledus.S1	AUGUSTUS	CDS	441130	441296	0.91	-	0	transcript_id "Ledus.S1G003300.t1"; gene_id "Ledus.S1G003300"
Ledus.S1	AUGUSTUS	exon	441130	441296	.	-	.	transcript_id "Ledus.S1G003300.t1"; gene_id "Ledus.S1G003300"
Ledus.S1	AUGUSTUS	start_codon	441294	441296	.	-	0	transcript_id "Ledus.S1G003300.t1"; gene_id "Ledus.S1G003300"
# This transcript jg3834.t2 is derived from g1270.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3835.t1 is derived from g1271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12962076	12964014	.	-	.	Ledus.S1G125600
Ledus.S1	AUGUSTUS	transcript	12962076	12964014	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	stop_codon	12962073	12962075	.	-	0	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	CDS	12962076	12962202	1	-	1	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	exon	12962076	12962202	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	intron	12962203	12962276	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	CDS	12962277	12962334	1	-	2	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	exon	12962277	12962334	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	intron	12962335	12962418	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	CDS	12962419	12962600	1	-	1	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	exon	12962419	12962600	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	intron	12962601	12962818	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	CDS	12962819	12962934	1	-	0	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	exon	12962819	12962934	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	intron	12962935	12963014	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	CDS	12963015	12963101	1	-	0	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	exon	12963015	12963101	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	intron	12963102	12963279	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	CDS	12963280	12963423	0.84	-	0	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	exon	12963280	12963423	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	intron	12963424	12963538	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	CDS	12963539	12963655	0.83	-	0	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	exon	12963539	12963655	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	intron	12963656	12963732	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	CDS	12963733	12963861	1	-	0	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	exon	12963733	12963861	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	intron	12963862	12963936	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	CDS	12963937	12964014	0.91	-	0	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	exon	12963937	12964014	.	-	.	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
Ledus.S1	AUGUSTUS	start_codon	12964012	12964014	.	-	0	transcript_id "Ledus.S1G125600.t1"; gene_id "Ledus.S1G125600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg12383.t1 is derived from g6005.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11567062	11570296	.	-	.	Ledus.S4G154000
Ledus.S4	AUGUSTUS	transcript	11567100	11570296	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	stop_codon	11567097	11567099	.	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11567100	11567107	0.97	-	2	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11567100	11567107	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11567108	11567246	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11567247	11567337	0.97	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11567247	11567337	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11567338	11567440	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11567441	11567554	0.99	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11567441	11567554	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11567555	11567643	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11567644	11567970	0.95	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11567644	11567970	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11567971	11568091	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11568092	11568322	0.94	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11568092	11568322	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11568323	11568468	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11568469	11568673	0.89	-	1	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11568469	11568673	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11568674	11568779	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11568780	11568859	0.99	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11568780	11568859	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11568860	11569016	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569017	11569091	0.98	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569017	11569091	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569092	11569188	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569189	11569290	1	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569189	11569290	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569291	11569388	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569389	11569513	1	-	2	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569389	11569513	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569514	11569600	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569601	11569721	1	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569601	11569721	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569722	11569798	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569799	11569849	1	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569799	11569849	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569850	11569932	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569933	11570037	1	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569933	11570037	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11570038	11570212	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11570213	11570296	0.35	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11570213	11570296	.	-	.	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	start_codon	11570294	11570296	.	-	0	transcript_id "Ledus.S4G154000.t1"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	transcript	11567062	11570296	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	stop_codon	11567059	11567061	.	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11567062	11567090	0.91	-	2	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11567062	11567090	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11567091	11567246	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11567247	11567337	0.91	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11567247	11567337	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11567338	11567440	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11567441	11567554	0.91	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11567441	11567554	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11567555	11567643	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11567644	11567970	0.95	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11567644	11567970	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11567971	11568091	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11568092	11568322	0.94	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11568092	11568322	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11568323	11568468	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11568469	11568673	0.87	-	1	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11568469	11568673	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11568674	11568779	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11568780	11568859	0.99	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11568780	11568859	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11568860	11569016	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569017	11569091	0.99	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569017	11569091	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569092	11569188	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569189	11569290	1	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569189	11569290	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569291	11569388	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569389	11569513	1	-	2	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569389	11569513	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569514	11569600	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569601	11569721	1	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569601	11569721	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569722	11569798	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569799	11569849	1	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569799	11569849	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569850	11569932	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569933	11570037	1	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569933	11570037	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11570038	11570212	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11570213	11570296	0.42	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11570213	11570296	.	-	.	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	start_codon	11570294	11570296	.	-	0	transcript_id "Ledus.S4G154000.t2"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	transcript	11567100	11570296	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	stop_codon	11567097	11567099	.	-	0	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11567100	11567107	0.56	-	2	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11567100	11567107	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11567108	11567246	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11567247	11567337	0.98	-	0	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11567247	11567337	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11567338	11567440	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11567441	11567554	0.95	-	0	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11567441	11567554	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11567555	11567643	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11567644	11567970	0.98	-	0	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11567644	11567970	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11567971	11568091	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11568092	11568322	0.98	-	0	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11568092	11568322	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11568323	11568468	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11568469	11568673	0.94	-	1	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11568469	11568673	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11568674	11568908	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11568909	11568964	0.85	-	0	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11568909	11568964	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11568965	11569188	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569189	11569290	1	-	0	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569189	11569290	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569291	11569388	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569389	11569513	1	-	2	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569389	11569513	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569514	11569600	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569601	11569721	1	-	0	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569601	11569721	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569722	11569798	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569799	11569849	1	-	0	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569799	11569849	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11569850	11569932	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11569933	11570037	1	-	0	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11569933	11570037	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	intron	11570038	11570212	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	CDS	11570213	11570296	0.4	-	0	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	exon	11570213	11570296	.	-	.	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
Ledus.S4	AUGUSTUS	start_codon	11570294	11570296	.	-	0	transcript_id "Ledus.S4G154000.t3"; gene_id "Ledus.S4G154000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8320.t1 is derived from g12992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10721821	10723296	.	+	.	Ledus.S5G109800
Ledus.S5	AUGUSTUS	transcript	10721821	10723296	.	+	.	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	start_codon	10721821	10721823	.	+	0	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	CDS	10721821	10721993	1	+	0	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	exon	10721821	10721993	.	+	.	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	intron	10721994	10722063	.	+	.	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	CDS	10722064	10722143	1	+	1	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	exon	10722064	10722143	.	+	.	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	intron	10722144	10722216	.	+	.	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	CDS	10722217	10722287	1	+	2	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	exon	10722217	10722287	.	+	.	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	intron	10722288	10722375	.	+	.	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	CDS	10722376	10722585	1	+	0	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	exon	10722376	10722585	.	+	.	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	intron	10722586	10722718	.	+	.	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	CDS	10722719	10722929	0.89	+	0	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	exon	10722719	10722929	.	+	.	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	intron	10722930	10723039	.	+	.	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	CDS	10723040	10723296	0.73	+	2	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	exon	10723040	10723296	.	+	.	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
Ledus.S5	AUGUSTUS	stop_codon	10723297	10723299	.	+	0	transcript_id "Ledus.S5G109800.t1"; gene_id "Ledus.S5G109800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10514.t1 is derived from g11544.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15753639	15753836	.	+	.	Ledus.S3G199100
Ledus.S3	AUGUSTUS	transcript	15753639	15753836	.	+	.	transcript_id "Ledus.S3G199100.t1"; gene_id "Ledus.S3G199100"
Ledus.S3	AUGUSTUS	start_codon	15753639	15753641	.	+	0	transcript_id "Ledus.S3G199100.t1"; gene_id "Ledus.S3G199100"
Ledus.S3	AUGUSTUS	CDS	15753639	15753836	0.97	+	0	transcript_id "Ledus.S3G199100.t1"; gene_id "Ledus.S3G199100"
Ledus.S3	AUGUSTUS	exon	15753639	15753836	.	+	.	transcript_id "Ledus.S3G199100.t1"; gene_id "Ledus.S3G199100"
Ledus.S3	AUGUSTUS	stop_codon	15753837	15753839	.	+	0	transcript_id "Ledus.S3G199100.t1"; gene_id "Ledus.S3G199100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6853.t1 is derived from g4297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34651649	34651912	.	+	.	Ledus.S1G427400
Ledus.S1	AUGUSTUS	transcript	34651649	34651912	.	+	.	transcript_id "Ledus.S1G427400.t1"; gene_id "Ledus.S1G427400"
Ledus.S1	AUGUSTUS	start_codon	34651649	34651651	.	+	0	transcript_id "Ledus.S1G427400.t1"; gene_id "Ledus.S1G427400"
Ledus.S1	AUGUSTUS	CDS	34651649	34651912	0.41	+	0	transcript_id "Ledus.S1G427400.t1"; gene_id "Ledus.S1G427400"
Ledus.S1	AUGUSTUS	exon	34651649	34651912	.	+	.	transcript_id "Ledus.S1G427400.t1"; gene_id "Ledus.S1G427400"
Ledus.S1	AUGUSTUS	stop_codon	34651913	34651915	.	+	0	transcript_id "Ledus.S1G427400.t1"; gene_id "Ledus.S1G427400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2235.t1 is derived from g9098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16227266	16227786	.	-	.	Ledus.S2G211700
Ledus.S2	AUGUSTUS	transcript	16227266	16227786	.	-	.	transcript_id "Ledus.S2G211700.t1"; gene_id "Ledus.S2G211700"
Ledus.S2	AUGUSTUS	stop_codon	16227263	16227265	.	-	0	transcript_id "Ledus.S2G211700.t1"; gene_id "Ledus.S2G211700"
Ledus.S2	AUGUSTUS	CDS	16227266	16227568	0.46	-	0	transcript_id "Ledus.S2G211700.t1"; gene_id "Ledus.S2G211700"
Ledus.S2	AUGUSTUS	exon	16227266	16227568	.	-	.	transcript_id "Ledus.S2G211700.t1"; gene_id "Ledus.S2G211700"
Ledus.S2	AUGUSTUS	intron	16227569	16227651	.	-	.	transcript_id "Ledus.S2G211700.t1"; gene_id "Ledus.S2G211700"
Ledus.S2	AUGUSTUS	CDS	16227652	16227786	0.56	-	0	transcript_id "Ledus.S2G211700.t1"; gene_id "Ledus.S2G211700"
Ledus.S2	AUGUSTUS	exon	16227652	16227786	.	-	.	transcript_id "Ledus.S2G211700.t1"; gene_id "Ledus.S2G211700"
Ledus.S2	AUGUSTUS	start_codon	16227784	16227786	.	-	0	transcript_id "Ledus.S2G211700.t1"; gene_id "Ledus.S2G211700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4246.t1 is derived from g1682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15749058	15749744	.	-	.	Ledus.S1G166700
Ledus.S1	AUGUSTUS	transcript	15749058	15749744	.	-	.	transcript_id "Ledus.S1G166700.t1"; gene_id "Ledus.S1G166700"
Ledus.S1	AUGUSTUS	stop_codon	15749055	15749057	.	-	0	transcript_id "Ledus.S1G166700.t1"; gene_id "Ledus.S1G166700"
Ledus.S1	AUGUSTUS	CDS	15749058	15749744	1	-	0	transcript_id "Ledus.S1G166700.t1"; gene_id "Ledus.S1G166700"
Ledus.S1	AUGUSTUS	exon	15749058	15749744	.	-	.	transcript_id "Ledus.S1G166700.t1"; gene_id "Ledus.S1G166700"
Ledus.S1	AUGUSTUS	start_codon	15749742	15749744	.	-	0	transcript_id "Ledus.S1G166700.t1"; gene_id "Ledus.S1G166700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9260.t1 is derived from g10290.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5639557	5639959	.	+	.	Ledus.S3G073700
Ledus.S3	AUGUSTUS	transcript	5639557	5639959	.	+	.	transcript_id "Ledus.S3G073700.t1"; gene_id "Ledus.S3G073700"
Ledus.S3	AUGUSTUS	start_codon	5639557	5639559	.	+	0	transcript_id "Ledus.S3G073700.t1"; gene_id "Ledus.S3G073700"
Ledus.S3	AUGUSTUS	CDS	5639557	5639640	0.82	+	0	transcript_id "Ledus.S3G073700.t1"; gene_id "Ledus.S3G073700"
Ledus.S3	AUGUSTUS	exon	5639557	5639640	.	+	.	transcript_id "Ledus.S3G073700.t1"; gene_id "Ledus.S3G073700"
Ledus.S3	AUGUSTUS	intron	5639641	5639836	.	+	.	transcript_id "Ledus.S3G073700.t1"; gene_id "Ledus.S3G073700"
Ledus.S3	AUGUSTUS	CDS	5639837	5639959	0.82	+	0	transcript_id "Ledus.S3G073700.t1"; gene_id "Ledus.S3G073700"
Ledus.S3	AUGUSTUS	exon	5639837	5639959	.	+	.	transcript_id "Ledus.S3G073700.t1"; gene_id "Ledus.S3G073700"
Ledus.S3	AUGUSTUS	stop_codon	5639960	5639962	.	+	0	transcript_id "Ledus.S3G073700.t1"; gene_id "Ledus.S3G073700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3814.t1 is derived from g1250.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12596484	12596702	.	-	.	Ledus.S1G123500
Ledus.S1	AUGUSTUS	transcript	12596484	12596702	.	-	.	transcript_id "Ledus.S1G123500.t1"; gene_id "Ledus.S1G123500"
Ledus.S1	AUGUSTUS	stop_codon	12596481	12596483	.	-	0	transcript_id "Ledus.S1G123500.t1"; gene_id "Ledus.S1G123500"
Ledus.S1	AUGUSTUS	CDS	12596484	12596702	1	-	0	transcript_id "Ledus.S1G123500.t1"; gene_id "Ledus.S1G123500"
Ledus.S1	AUGUSTUS	exon	12596484	12596702	.	-	.	transcript_id "Ledus.S1G123500.t1"; gene_id "Ledus.S1G123500"
Ledus.S1	AUGUSTUS	start_codon	12596700	12596702	.	-	0	transcript_id "Ledus.S1G123500.t1"; gene_id "Ledus.S1G123500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11753.t1 is derived from g5372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6568696	6573907	.	-	.	Ledus.S4G090900
Ledus.S4	AUGUSTUS	transcript	6568696	6573907	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	stop_codon	6568693	6568695	.	-	0	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6568696	6568892	1	-	2	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6568696	6568892	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6568893	6569035	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6569036	6569509	1	-	2	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6569036	6569509	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6569510	6569600	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6569601	6569712	1	-	0	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6569601	6569712	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6569713	6569816	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6569817	6570815	0.97	-	0	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6569817	6570815	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6570816	6570945	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6570946	6571051	0.72	-	1	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6570946	6571051	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6571052	6571209	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6571210	6571364	0.73	-	0	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6571210	6571364	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6571365	6571442	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6571443	6571595	1	-	0	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6571443	6571595	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6571596	6571691	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6571692	6571976	1	-	0	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6571692	6571976	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6571977	6572054	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6572055	6572240	1	-	0	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6572055	6572240	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6572241	6572464	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6572465	6572957	1	-	1	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6572465	6572957	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6572958	6573077	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6573078	6573202	1	-	0	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6573078	6573202	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6573203	6573298	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6573299	6573395	1	-	1	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6573299	6573395	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6573396	6573546	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6573547	6573659	1	-	0	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6573547	6573659	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	intron	6573660	6573802	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	CDS	6573803	6573907	0.67	-	0	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	exon	6573803	6573907	.	-	.	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
Ledus.S4	AUGUSTUS	start_codon	6573905	6573907	.	-	0	transcript_id "Ledus.S4G090900.t1"; gene_id "Ledus.S4G090900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11561.t1 is derived from g5179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5278864	5285784	.	-	.	Ledus.S4G071700
Ledus.S4	AUGUSTUS	transcript	5278864	5285784	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	stop_codon	5278861	5278863	.	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5278864	5279076	1	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5278864	5279076	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5279077	5279155	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5279156	5279375	1	-	1	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5279156	5279375	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5279376	5279469	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5279470	5279685	0.61	-	1	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5279470	5279685	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5279686	5279982	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5279983	5280005	0.48	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5279983	5280005	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5280006	5280093	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5280094	5280177	0.89	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5280094	5280177	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5280178	5280265	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5280266	5280440	1	-	1	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5280266	5280440	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5280441	5280550	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5280551	5280592	1	-	1	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5280551	5280592	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5280593	5280679	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5280680	5280797	1	-	2	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5280680	5280797	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5280798	5280873	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5280874	5281471	0.5	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5280874	5281471	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5281472	5281634	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5281635	5281726	0.71	-	2	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5281635	5281726	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5281727	5281851	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5281852	5282037	0.84	-	2	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5281852	5282037	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5282038	5282214	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5282215	5282521	0.92	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5282215	5282521	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5282522	5282698	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5282699	5282781	0.89	-	2	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5282699	5282781	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5282782	5282948	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5282949	5283015	0.99	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5282949	5283015	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5283016	5283106	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5283107	5283145	1	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5283107	5283145	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5283146	5283290	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5283291	5283368	1	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5283291	5283368	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5283369	5283447	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5283448	5283573	1	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5283448	5283573	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5283574	5283660	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5283661	5283738	1	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5283661	5283738	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5283739	5283877	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5283878	5283961	0.98	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5283878	5283961	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5283962	5284083	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5284084	5284203	0.95	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5284084	5284203	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5284204	5284320	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5284321	5284410	0.98	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5284321	5284410	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5284411	5284492	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5284493	5284611	0.99	-	2	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5284493	5284611	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5284612	5284692	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5284693	5284766	0.89	-	1	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5284693	5284766	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	intron	5284767	5285416	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	CDS	5285417	5285784	0.93	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	exon	5285417	5285784	.	-	.	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
Ledus.S4	AUGUSTUS	start_codon	5285782	5285784	.	-	0	transcript_id "Ledus.S4G071700.t1"; gene_id "Ledus.S4G071700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg566.t1 is derived from g7427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3368987	3371144	.	-	.	Ledus.S2G044800
Ledus.S2	AUGUSTUS	transcript	3368987	3371144	.	-	.	transcript_id "Ledus.S2G044800.t1"; gene_id "Ledus.S2G044800"
Ledus.S2	AUGUSTUS	stop_codon	3368984	3368986	.	-	0	transcript_id "Ledus.S2G044800.t1"; gene_id "Ledus.S2G044800"
Ledus.S2	AUGUSTUS	CDS	3368987	3370830	0.77	-	2	transcript_id "Ledus.S2G044800.t1"; gene_id "Ledus.S2G044800"
Ledus.S2	AUGUSTUS	exon	3368987	3370830	.	-	.	transcript_id "Ledus.S2G044800.t1"; gene_id "Ledus.S2G044800"
Ledus.S2	AUGUSTUS	intron	3370831	3370999	.	-	.	transcript_id "Ledus.S2G044800.t1"; gene_id "Ledus.S2G044800"
Ledus.S2	AUGUSTUS	CDS	3371000	3371144	0.82	-	0	transcript_id "Ledus.S2G044800.t1"; gene_id "Ledus.S2G044800"
Ledus.S2	AUGUSTUS	exon	3371000	3371144	.	-	.	transcript_id "Ledus.S2G044800.t1"; gene_id "Ledus.S2G044800"
Ledus.S2	AUGUSTUS	start_codon	3371142	3371144	.	-	0	transcript_id "Ledus.S2G044800.t1"; gene_id "Ledus.S2G044800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6986.t1 is derived from g6517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	543773	545344	.	+	.	Ledus.C7G004700
Ledus.C7	AUGUSTUS	transcript	543773	545344	.	+	.	transcript_id "Ledus.C7G004700.t1"; gene_id "Ledus.C7G004700"
Ledus.C7	AUGUSTUS	start_codon	543773	543775	.	+	0	transcript_id "Ledus.C7G004700.t1"; gene_id "Ledus.C7G004700"
Ledus.C7	AUGUSTUS	CDS	543773	545344	0.67	+	0	transcript_id "Ledus.C7G004700.t1"; gene_id "Ledus.C7G004700"
Ledus.C7	AUGUSTUS	exon	543773	545344	.	+	.	transcript_id "Ledus.C7G004700.t1"; gene_id "Ledus.C7G004700"
Ledus.C7	AUGUSTUS	stop_codon	545345	545347	.	+	0	transcript_id "Ledus.C7G004700.t1"; gene_id "Ledus.C7G004700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10512.t1 is derived from g11542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15747712	15748308	.	+	.	Ledus.S3G198900
Ledus.S3	AUGUSTUS	transcript	15747712	15748308	.	+	.	transcript_id "Ledus.S3G198900.t1"; gene_id "Ledus.S3G198900"
Ledus.S3	AUGUSTUS	start_codon	15747712	15747714	.	+	0	transcript_id "Ledus.S3G198900.t1"; gene_id "Ledus.S3G198900"
Ledus.S3	AUGUSTUS	CDS	15747712	15747894	1	+	0	transcript_id "Ledus.S3G198900.t1"; gene_id "Ledus.S3G198900"
Ledus.S3	AUGUSTUS	exon	15747712	15747894	.	+	.	transcript_id "Ledus.S3G198900.t1"; gene_id "Ledus.S3G198900"
Ledus.S3	AUGUSTUS	intron	15747895	15748251	.	+	.	transcript_id "Ledus.S3G198900.t1"; gene_id "Ledus.S3G198900"
Ledus.S3	AUGUSTUS	CDS	15748252	15748308	0.99	+	0	transcript_id "Ledus.S3G198900.t1"; gene_id "Ledus.S3G198900"
Ledus.S3	AUGUSTUS	exon	15748252	15748308	.	+	.	transcript_id "Ledus.S3G198900.t1"; gene_id "Ledus.S3G198900"
Ledus.S3	AUGUSTUS	stop_codon	15748309	15748311	.	+	0	transcript_id "Ledus.S3G198900.t1"; gene_id "Ledus.S3G198900"
# This transcript jg1162.t2 is derived from g8023.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1163.t1 is derived from g8024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8021708	8025036	.	+	.	Ledus.S2G104500
Ledus.S2	AUGUSTUS	transcript	8021708	8025036	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	start_codon	8021708	8021710	.	+	0	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8021708	8021818	0.97	+	0	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8021708	8021818	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8021819	8021916	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8021917	8022166	0.97	+	0	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8021917	8022166	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8022167	8022286	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8022287	8022477	0.93	+	2	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8022287	8022477	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8022478	8022637	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8022638	8023135	1	+	0	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8022638	8023135	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8023136	8023274	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8023275	8023419	0.73	+	0	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8023275	8023419	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8023420	8023534	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8023535	8023640	0.59	+	2	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8023535	8023640	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8023641	8023760	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8023761	8023854	0.76	+	1	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8023761	8023854	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8023855	8024011	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8024012	8024229	0.99	+	0	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8024012	8024229	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8024230	8024313	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8024314	8024413	1	+	1	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8024314	8024413	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8024414	8024609	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8024610	8024726	1	+	0	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8024610	8024726	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8024727	8024802	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8024803	8024859	1	+	0	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8024803	8024859	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8024860	8024940	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8024941	8025036	1	+	0	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8024941	8025036	.	+	.	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	stop_codon	8025037	8025039	.	+	0	transcript_id "Ledus.S2G104500.t1"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	transcript	8021708	8025036	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	start_codon	8021708	8021710	.	+	0	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8021708	8021818	0.93	+	0	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8021708	8021818	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8021819	8021916	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8021917	8022166	0.97	+	0	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8021917	8022166	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8022167	8022286	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8022287	8022477	0.96	+	2	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8022287	8022477	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8022478	8022637	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8022638	8022989	0.6	+	0	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8022638	8022989	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8022990	8023102	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8023103	8023135	0.73	+	2	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8023103	8023135	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8023136	8023287	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8023288	8023419	0.74	+	2	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8023288	8023419	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8023420	8023534	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8023535	8023640	0.58	+	2	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8023535	8023640	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8023641	8023760	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8023761	8023854	0.76	+	1	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8023761	8023854	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8023855	8024011	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8024012	8024229	1	+	0	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8024012	8024229	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8024230	8024313	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8024314	8024413	1	+	1	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8024314	8024413	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8024414	8024609	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8024610	8024726	1	+	0	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8024610	8024726	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8024727	8024802	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8024803	8024859	1	+	0	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8024803	8024859	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	intron	8024860	8024940	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	CDS	8024941	8025036	1	+	0	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	exon	8024941	8025036	.	+	.	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
Ledus.S2	AUGUSTUS	stop_codon	8025037	8025039	.	+	0	transcript_id "Ledus.S2G104500.t2"; gene_id "Ledus.S2G104500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1112.t1 is derived from g7973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7595569	7598318	.	+	.	Ledus.S2G099400
Ledus.S2	AUGUSTUS	transcript	7595569	7598318	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	start_codon	7595569	7595571	.	+	0	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	CDS	7595569	7595599	0.73	+	0	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	exon	7595569	7595599	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	intron	7595600	7595693	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	CDS	7595694	7595800	1	+	2	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	exon	7595694	7595800	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	intron	7595801	7595880	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	CDS	7595881	7595969	1	+	0	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	exon	7595881	7595969	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	intron	7595970	7596044	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	CDS	7596045	7596158	1	+	1	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	exon	7596045	7596158	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	intron	7596159	7596552	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	CDS	7596553	7596640	1	+	1	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	exon	7596553	7596640	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	intron	7596641	7596763	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	CDS	7596764	7596849	1	+	0	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	exon	7596764	7596849	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	intron	7596850	7596973	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	CDS	7596974	7597076	0.95	+	1	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	exon	7596974	7597076	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	intron	7597077	7597228	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	CDS	7597229	7597326	1	+	0	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	exon	7597229	7597326	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	intron	7597327	7597463	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	CDS	7597464	7597893	0.95	+	1	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	exon	7597464	7597893	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	intron	7597894	7598009	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	CDS	7598010	7598318	1	+	0	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	exon	7598010	7598318	.	+	.	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
Ledus.S2	AUGUSTUS	stop_codon	7598319	7598321	.	+	0	transcript_id "Ledus.S2G099400.t1"; gene_id "Ledus.S2G099400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12738.t1 is derived from g6360.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14167242	14167898	.	+	.	Ledus.S4G189400
Ledus.S4	AUGUSTUS	transcript	14167242	14167898	.	+	.	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	start_codon	14167242	14167244	.	+	0	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	CDS	14167242	14167331	0.99	+	0	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	exon	14167242	14167331	.	+	.	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	intron	14167332	14167516	.	+	.	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	CDS	14167517	14167554	1	+	0	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	exon	14167517	14167554	.	+	.	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	intron	14167555	14167649	.	+	.	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	CDS	14167650	14167749	1	+	1	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	exon	14167650	14167749	.	+	.	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	intron	14167750	14167826	.	+	.	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	CDS	14167827	14167898	0.88	+	0	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	exon	14167827	14167898	.	+	.	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
Ledus.S4	AUGUSTUS	stop_codon	14167899	14167901	.	+	0	transcript_id "Ledus.S4G189400.t1"; gene_id "Ledus.S4G189400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5298.t1 is derived from g2737.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22974358	22974840	.	+	.	Ledus.S1G271900
Ledus.S1	AUGUSTUS	transcript	22974358	22974840	.	+	.	transcript_id "Ledus.S1G271900.t1"; gene_id "Ledus.S1G271900"
Ledus.S1	AUGUSTUS	start_codon	22974358	22974360	.	+	0	transcript_id "Ledus.S1G271900.t1"; gene_id "Ledus.S1G271900"
Ledus.S1	AUGUSTUS	CDS	22974358	22974840	0.45	+	0	transcript_id "Ledus.S1G271900.t1"; gene_id "Ledus.S1G271900"
Ledus.S1	AUGUSTUS	exon	22974358	22974840	.	+	.	transcript_id "Ledus.S1G271900.t1"; gene_id "Ledus.S1G271900"
Ledus.S1	AUGUSTUS	stop_codon	22974841	22974843	.	+	0	transcript_id "Ledus.S1G271900.t1"; gene_id "Ledus.S1G271900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2576.t1 is derived from g9439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19171165	19175429	.	+	.	Ledus.S2G245800
Ledus.S2	AUGUSTUS	transcript	19171165	19175429	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	start_codon	19171165	19171167	.	+	0	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19171165	19171286	1	+	0	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19171165	19171286	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19171287	19171516	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19171517	19171589	1	+	1	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19171517	19171589	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19171590	19171726	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19171727	19171792	1	+	0	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19171727	19171792	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19171793	19171977	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19171978	19172043	1	+	0	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19171978	19172043	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19172044	19172167	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19172168	19172274	1	+	0	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19172168	19172274	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19172275	19172423	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19172424	19172475	1	+	1	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19172424	19172475	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19172476	19172619	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19172620	19172685	0.97	+	0	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19172620	19172685	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19172686	19172800	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19172801	19172865	1	+	0	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19172801	19172865	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19172866	19173281	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19173282	19173366	0.67	+	1	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19173282	19173366	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19173367	19173451	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19173452	19173521	0.82	+	0	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19173452	19173521	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19173522	19173737	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19173738	19173836	0.54	+	2	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19173738	19173836	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19173837	19173939	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19173940	19173991	0.66	+	2	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19173940	19173991	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19173992	19174185	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19174186	19174237	1	+	1	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19174186	19174237	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19174238	19174335	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19174336	19174452	1	+	0	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19174336	19174452	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	intron	19174453	19174613	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	CDS	19174614	19175429	0.82	+	0	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	exon	19174614	19175429	.	+	.	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
Ledus.S2	AUGUSTUS	stop_codon	19175430	19175432	.	+	0	transcript_id "Ledus.S2G245800.t1"; gene_id "Ledus.S2G245800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5846.t1 is derived from g3288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27262947	27265481	.	-	.	Ledus.S1G326700
Ledus.S1	AUGUSTUS	transcript	27262947	27265481	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	stop_codon	27262944	27262946	.	-	0	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	CDS	27262947	27262950	1	-	1	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	exon	27262947	27262950	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	intron	27262951	27263126	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	CDS	27263127	27263962	0.67	-	0	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	exon	27263127	27263962	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	intron	27263963	27264129	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	CDS	27264130	27264213	1	-	0	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	exon	27264130	27264213	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	intron	27264214	27264326	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	CDS	27264327	27264375	1	-	1	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	exon	27264327	27264375	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	intron	27264376	27264510	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	CDS	27264511	27264553	1	-	2	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	exon	27264511	27264553	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	intron	27264554	27264702	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	CDS	27264703	27264760	1	-	0	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	exon	27264703	27264760	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	intron	27264761	27264930	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	CDS	27264931	27265057	1	-	1	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	exon	27264931	27265057	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	intron	27265058	27265356	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	CDS	27265357	27265481	0.96	-	0	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	exon	27265357	27265481	.	-	.	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
Ledus.S1	AUGUSTUS	start_codon	27265479	27265481	.	-	0	transcript_id "Ledus.S1G326700.t1"; gene_id "Ledus.S1G326700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6988.t1 is derived from g6519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	588877	590392	.	-	.	Ledus.C7G004900
Ledus.C7	AUGUSTUS	transcript	588877	590392	.	-	.	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	stop_codon	588874	588876	.	-	0	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	CDS	588877	589014	0.99	-	0	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	exon	588877	589014	.	-	.	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	intron	589015	589148	.	-	.	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	CDS	589149	589260	1	-	1	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	exon	589149	589260	.	-	.	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	intron	589261	589451	.	-	.	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	CDS	589452	589715	0.97	-	1	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	exon	589452	589715	.	-	.	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	intron	589716	589822	.	-	.	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	CDS	589823	589925	1	-	2	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	exon	589823	589925	.	-	.	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	intron	589926	590085	.	-	.	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	CDS	590086	590164	1	-	0	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	exon	590086	590164	.	-	.	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	intron	590165	590269	.	-	.	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	CDS	590270	590392	0.98	-	0	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	exon	590270	590392	.	-	.	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
Ledus.C7	AUGUSTUS	start_codon	590390	590392	.	-	0	transcript_id "Ledus.C7G004900.t1"; gene_id "Ledus.C7G004900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg12649.t1 is derived from g6271.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13609174	13613468	.	+	.	Ledus.S4G180500
Ledus.S4	AUGUSTUS	transcript	13609174	13613468	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	start_codon	13609174	13609176	.	+	0	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13609174	13609228	1	+	0	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13609174	13609228	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13609229	13609432	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13609433	13609509	1	+	2	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13609433	13609509	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13609510	13609669	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13609670	13609727	0.97	+	0	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13609670	13609727	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13609728	13610005	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13610006	13610551	0.92	+	2	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13610006	13610551	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13610552	13610647	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13610648	13610859	1	+	2	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13610648	13610859	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13610860	13610991	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13610992	13611114	1	+	0	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13610992	13611114	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13611115	13611216	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13611217	13611420	0.98	+	0	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13611217	13611420	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13611421	13611523	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13611524	13613077	0.95	+	0	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13611524	13613077	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13613078	13613235	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13613236	13613297	0.59	+	0	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13613236	13613297	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13613298	13613428	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13613429	13613468	0.77	+	1	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13613429	13613468	.	+	.	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	stop_codon	13613469	13613471	.	+	0	transcript_id "Ledus.S4G180500.t1"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	transcript	13609174	13613468	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	start_codon	13609174	13609176	.	+	0	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13609174	13609228	1	+	0	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13609174	13609228	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13609229	13609438	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13609439	13609509	1	+	2	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13609439	13609509	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13609510	13609669	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13609670	13609727	0.95	+	0	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13609670	13609727	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13609728	13610005	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13610006	13610551	0.91	+	2	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13610006	13610551	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13610552	13610647	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13610648	13610859	0.99	+	2	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13610648	13610859	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13610860	13610991	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13610992	13611114	0.99	+	0	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13610992	13611114	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13611115	13611216	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13611217	13611420	0.92	+	0	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13611217	13611420	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13611421	13611523	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13611524	13613077	0.87	+	0	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13611524	13613077	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13613078	13613235	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13613236	13613297	0.57	+	0	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13613236	13613297	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13613298	13613428	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13613429	13613468	0.77	+	1	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13613429	13613468	.	+	.	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	stop_codon	13613469	13613471	.	+	0	transcript_id "Ledus.S4G180500.t2"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	transcript	13609174	13613468	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	start_codon	13609174	13609176	.	+	0	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13609174	13609228	0.69	+	0	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13609174	13609228	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13609229	13609438	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13609439	13609509	0.68	+	2	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13609439	13609509	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13609510	13609675	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13609676	13609727	0.68	+	0	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13609676	13609727	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13609728	13610005	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13610006	13610551	0.65	+	2	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13610006	13610551	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13610552	13610647	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13610648	13610859	1	+	2	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13610648	13610859	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13610860	13610991	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13610992	13611114	1	+	0	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13610992	13611114	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13611115	13611216	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13611217	13611420	0.91	+	0	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13611217	13611420	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13611421	13611523	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13611524	13613077	0.91	+	0	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13611524	13613077	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13613078	13613235	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13613236	13613297	0.63	+	0	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13613236	13613297	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	intron	13613298	13613428	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	CDS	13613429	13613468	0.75	+	1	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	exon	13613429	13613468	.	+	.	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
Ledus.S4	AUGUSTUS	stop_codon	13613469	13613471	.	+	0	transcript_id "Ledus.S4G180500.t3"; gene_id "Ledus.S4G180500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8014.t1 is derived from g12685.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8486369	8487411	.	+	.	Ledus.S5G079200
Ledus.S5	AUGUSTUS	transcript	8486369	8487411	.	+	.	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	start_codon	8486369	8486371	.	+	0	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	CDS	8486369	8486377	0.3	+	0	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	exon	8486369	8486377	.	+	.	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	intron	8486378	8486679	.	+	.	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	CDS	8486680	8486713	0.26	+	0	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	exon	8486680	8486713	.	+	.	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	intron	8486714	8486758	.	+	.	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	CDS	8486759	8486775	0.31	+	2	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	exon	8486759	8486775	.	+	.	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	intron	8486776	8486968	.	+	.	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	CDS	8486969	8487209	0.3	+	0	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	exon	8486969	8487209	.	+	.	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	intron	8487210	8487406	.	+	.	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	CDS	8487407	8487411	0.83	+	2	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	exon	8487407	8487411	.	+	.	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
Ledus.S5	AUGUSTUS	stop_codon	8487412	8487414	.	+	0	transcript_id "Ledus.S5G079200.t1"; gene_id "Ledus.S5G079200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2622.t1 is derived from g55.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	597935	600018	.	-	.	Ledus.S1G004300
Ledus.S1	AUGUSTUS	transcript	597935	600018	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	stop_codon	597932	597934	.	-	0	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	CDS	597935	598429	0.98	-	0	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	exon	597935	598429	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	intron	598430	598516	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	CDS	598517	598699	1	-	0	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	exon	598517	598699	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	intron	598700	598794	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	CDS	598795	599100	1	-	0	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	exon	598795	599100	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	intron	599101	599183	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	CDS	599184	599375	1	-	0	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	exon	599184	599375	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	intron	599376	599465	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	CDS	599466	599585	1	-	0	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	exon	599466	599585	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	intron	599586	599669	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	CDS	599670	599852	0.98	-	0	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	exon	599670	599852	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	intron	599853	599955	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	CDS	599956	600018	0.67	-	0	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	exon	599956	600018	.	-	.	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
Ledus.S1	AUGUSTUS	start_codon	600016	600018	.	-	0	transcript_id "Ledus.S1G004300.t1"; gene_id "Ledus.S1G004300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5306.t1 is derived from g2745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23222669	23223046	.	-	.	Ledus.S1G272700
Ledus.S1	AUGUSTUS	transcript	23222669	23223046	.	-	.	transcript_id "Ledus.S1G272700.t1"; gene_id "Ledus.S1G272700"
Ledus.S1	AUGUSTUS	stop_codon	23222666	23222668	.	-	0	transcript_id "Ledus.S1G272700.t1"; gene_id "Ledus.S1G272700"
Ledus.S1	AUGUSTUS	CDS	23222669	23222751	0.23	-	2	transcript_id "Ledus.S1G272700.t1"; gene_id "Ledus.S1G272700"
Ledus.S1	AUGUSTUS	exon	23222669	23222751	.	-	.	transcript_id "Ledus.S1G272700.t1"; gene_id "Ledus.S1G272700"
Ledus.S1	AUGUSTUS	intron	23222752	23222844	.	-	.	transcript_id "Ledus.S1G272700.t1"; gene_id "Ledus.S1G272700"
Ledus.S1	AUGUSTUS	CDS	23222845	23223046	0.36	-	0	transcript_id "Ledus.S1G272700.t1"; gene_id "Ledus.S1G272700"
Ledus.S1	AUGUSTUS	exon	23222845	23223046	.	-	.	transcript_id "Ledus.S1G272700.t1"; gene_id "Ledus.S1G272700"
Ledus.S1	AUGUSTUS	start_codon	23223044	23223046	.	-	0	transcript_id "Ledus.S1G272700.t1"; gene_id "Ledus.S1G272700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2735.t1 is derived from g169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2684644	2687505	.	+	.	Ledus.S1G015600
Ledus.S1	AUGUSTUS	transcript	2684644	2687505	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	start_codon	2684644	2684646	.	+	0	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	CDS	2684644	2684725	0.51	+	0	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	exon	2684644	2684725	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	intron	2684726	2684829	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	CDS	2684830	2685127	0.97	+	2	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	exon	2684830	2685127	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	intron	2685128	2685278	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	CDS	2685279	2685347	1	+	1	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	exon	2685279	2685347	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	intron	2685348	2685471	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	CDS	2685472	2685544	1	+	1	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	exon	2685472	2685544	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	intron	2685545	2685816	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	CDS	2685817	2685834	0.33	+	0	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	exon	2685817	2685834	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	intron	2685835	2685916	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	CDS	2685917	2685954	0.43	+	0	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	exon	2685917	2685954	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	intron	2685955	2686293	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	CDS	2686294	2686301	0.49	+	1	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	exon	2686294	2686301	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	intron	2686302	2686486	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	CDS	2686487	2687505	0.13	+	2	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	exon	2686487	2687505	.	+	.	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
Ledus.S1	AUGUSTUS	stop_codon	2687506	2687508	.	+	0	transcript_id "Ledus.S1G015600.t1"; gene_id "Ledus.S1G015600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5869.t1 is derived from g3311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27477856	27481616	.	+	.	Ledus.S1G329000
Ledus.S1	AUGUSTUS	transcript	27477856	27481616	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	start_codon	27477856	27477858	.	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27477856	27478039	0.68	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27477856	27478039	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27478040	27478104	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27478105	27478262	1	+	2	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27478105	27478262	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27478263	27478349	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27478350	27478456	1	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27478350	27478456	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27478457	27478525	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27478526	27478626	1	+	1	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27478526	27478626	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27478627	27478706	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27478707	27478783	1	+	2	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27478707	27478783	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27478784	27478873	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27478874	27478993	1	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27478874	27478993	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27478994	27479080	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27479081	27479311	1	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27479081	27479311	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27479312	27479401	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27479402	27479518	1	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27479402	27479518	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27479519	27479606	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27479607	27479681	1	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27479607	27479681	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27479682	27479767	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27479768	27479845	1	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27479768	27479845	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27479846	27479939	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27479940	27479999	1	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27479940	27479999	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27480000	27480092	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27480093	27480155	1	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27480093	27480155	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27480156	27480262	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27480263	27480407	1	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27480263	27480407	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27480408	27480491	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27480492	27480627	1	+	2	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27480492	27480627	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27480628	27480714	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27480715	27480792	1	+	1	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27480715	27480792	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27480793	27480888	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27480889	27481048	1	+	1	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27480889	27481048	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27481049	27481145	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27481146	27481244	1	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27481146	27481244	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27481245	27481331	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27481332	27481436	1	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27481332	27481436	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	intron	27481437	27481517	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	CDS	27481518	27481616	1	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	exon	27481518	27481616	.	+	.	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
Ledus.S1	AUGUSTUS	stop_codon	27481617	27481619	.	+	0	transcript_id "Ledus.S1G329000.t1"; gene_id "Ledus.S1G329000"
# This transcript jg6668.t2 is derived from g4111.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6669.t1 is derived from g4112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32973806	32975227	.	-	.	Ledus.S1G409000
Ledus.S1	AUGUSTUS	transcript	32973806	32975227	.	-	.	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	stop_codon	32973803	32973805	.	-	0	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	CDS	32973806	32973934	0.89	-	0	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	exon	32973806	32973934	.	-	.	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	intron	32973935	32974029	.	-	.	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	CDS	32974030	32974233	1	-	0	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	exon	32974030	32974233	.	-	.	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	intron	32974234	32974322	.	-	.	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	CDS	32974323	32974416	1	-	1	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	exon	32974323	32974416	.	-	.	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	intron	32974417	32974487	.	-	.	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	CDS	32974488	32974595	1	-	1	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	exon	32974488	32974595	.	-	.	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	intron	32974596	32974699	.	-	.	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	CDS	32974700	32974832	0.98	-	2	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	exon	32974700	32974832	.	-	.	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	intron	32974833	32974941	.	-	.	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	CDS	32974942	32975227	0.67	-	0	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	exon	32974942	32975227	.	-	.	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
Ledus.S1	AUGUSTUS	start_codon	32975225	32975227	.	-	0	transcript_id "Ledus.S1G409000.t1"; gene_id "Ledus.S1G409000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10053.t1 is derived from g11083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12190996	12192443	.	-	.	Ledus.S3G153000
Ledus.S3	AUGUSTUS	transcript	12190996	12192443	.	-	.	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	stop_codon	12190993	12190995	.	-	0	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	CDS	12190996	12191075	1	-	2	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	exon	12190996	12191075	.	-	.	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	intron	12191076	12191329	.	-	.	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	CDS	12191330	12191372	0.86	-	0	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	exon	12191330	12191372	.	-	.	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	intron	12191373	12191457	.	-	.	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	CDS	12191458	12191533	0.8	-	1	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	exon	12191458	12191533	.	-	.	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	intron	12191534	12191844	.	-	.	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	CDS	12191845	12192443	0.37	-	0	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	exon	12191845	12192443	.	-	.	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
Ledus.S3	AUGUSTUS	start_codon	12192441	12192443	.	-	0	transcript_id "Ledus.S3G153000.t1"; gene_id "Ledus.S3G153000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9342.t1 is derived from g10372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6250858	6251947	.	-	.	Ledus.S3G081900
Ledus.S3	AUGUSTUS	transcript	6250858	6251947	.	-	.	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	stop_codon	6250855	6250857	.	-	0	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	CDS	6250858	6251034	0.92	-	0	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	exon	6250858	6251034	.	-	.	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	intron	6251035	6251101	.	-	.	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	CDS	6251102	6251254	1	-	0	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	exon	6251102	6251254	.	-	.	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	intron	6251255	6251344	.	-	.	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	CDS	6251345	6251573	0.44	-	1	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	exon	6251345	6251573	.	-	.	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	intron	6251574	6251738	.	-	.	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	CDS	6251739	6251947	0.69	-	0	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	exon	6251739	6251947	.	-	.	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
Ledus.S3	AUGUSTUS	start_codon	6251945	6251947	.	-	0	transcript_id "Ledus.S3G081900.t1"; gene_id "Ledus.S3G081900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5549.t1 is derived from g2988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25070463	25073660	.	+	.	Ledus.S1G297000
Ledus.S1	AUGUSTUS	transcript	25070463	25073660	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	start_codon	25070463	25070465	.	+	0	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	CDS	25070463	25070513	0.51	+	0	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	exon	25070463	25070513	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	intron	25070514	25070644	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	CDS	25070645	25070722	1	+	0	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	exon	25070645	25070722	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	intron	25070723	25070825	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	CDS	25070826	25070908	1	+	0	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	exon	25070826	25070908	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	intron	25070909	25071063	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	CDS	25071064	25071165	1	+	1	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	exon	25071064	25071165	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	intron	25071166	25071268	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	CDS	25071269	25071518	0.94	+	1	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	exon	25071269	25071518	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	intron	25071519	25071618	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	CDS	25071619	25071723	1	+	0	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	exon	25071619	25071723	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	intron	25071724	25071952	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	CDS	25071953	25072053	1	+	0	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	exon	25071953	25072053	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	intron	25072054	25072175	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	CDS	25072176	25072314	0.82	+	1	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	exon	25072176	25072314	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	intron	25072315	25072424	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	CDS	25072425	25072537	0.87	+	0	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	exon	25072425	25072537	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	intron	25072538	25072672	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	CDS	25072673	25073660	0.97	+	1	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	exon	25072673	25073660	.	+	.	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
Ledus.S1	AUGUSTUS	stop_codon	25073661	25073663	.	+	0	transcript_id "Ledus.S1G297000.t1"; gene_id "Ledus.S1G297000"
# This transcript jg1350.t2 is derived from g8211.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1351.t1 is derived from g8212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9415716	9417712	.	+	.	Ledus.S2G123300
Ledus.S2	AUGUSTUS	transcript	9415716	9417712	.	+	.	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	start_codon	9415716	9415718	.	+	0	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	CDS	9415716	9416040	0.95	+	0	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	exon	9415716	9416040	.	+	.	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	intron	9416041	9416275	.	+	.	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	CDS	9416276	9416694	1	+	2	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	exon	9416276	9416694	.	+	.	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	intron	9416695	9416902	.	+	.	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	CDS	9416903	9417048	1	+	0	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	exon	9416903	9417048	.	+	.	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	intron	9417049	9417154	.	+	.	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	CDS	9417155	9417215	1	+	1	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	exon	9417155	9417215	.	+	.	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	intron	9417216	9417304	.	+	.	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	CDS	9417305	9417712	0.99	+	0	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	exon	9417305	9417712	.	+	.	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
Ledus.S2	AUGUSTUS	stop_codon	9417713	9417715	.	+	0	transcript_id "Ledus.S2G123300.t1"; gene_id "Ledus.S2G123300"
# This transcript jg6848.t2 is derived from g4292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6849.t1 is derived from g4293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34636136	34638421	.	-	.	Ledus.S1G427000
Ledus.S1	AUGUSTUS	transcript	34636136	34638421	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	stop_codon	34636133	34636135	.	-	0	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	CDS	34636136	34636486	0.99	-	0	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	exon	34636136	34636486	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	intron	34636487	34636587	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	CDS	34636588	34636782	1	-	0	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	exon	34636588	34636782	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	intron	34636783	34636892	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	CDS	34636893	34637054	1	-	0	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	exon	34636893	34637054	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	intron	34637055	34637138	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	CDS	34637139	34637396	0.99	-	0	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	exon	34637139	34637396	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	intron	34637397	34637479	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	CDS	34637480	34637626	1	-	0	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	exon	34637480	34637626	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	intron	34637627	34637702	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	CDS	34637703	34637864	1	-	0	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	exon	34637703	34637864	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	intron	34637865	34637948	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	CDS	34637949	34638109	1	-	2	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	exon	34637949	34638109	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	intron	34638110	34638216	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	CDS	34638217	34638421	0.95	-	0	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	exon	34638217	34638421	.	-	.	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
Ledus.S1	AUGUSTUS	start_codon	34638419	34638421	.	-	0	transcript_id "Ledus.S1G427000.t1"; gene_id "Ledus.S1G427000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5603.t1 is derived from g3042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25329287	25332071	.	+	.	Ledus.S1G302400
Ledus.S1	AUGUSTUS	transcript	25329287	25332071	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	start_codon	25329287	25329289	.	+	0	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25329287	25329452	0.9	+	0	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25329287	25329452	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	intron	25329453	25329541	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25329542	25329589	1	+	2	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25329542	25329589	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	intron	25329590	25329674	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25329675	25329735	1	+	2	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25329675	25329735	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	intron	25329736	25329831	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25329832	25330001	1	+	1	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25329832	25330001	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	intron	25330002	25330135	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25330136	25330270	1	+	2	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25330136	25330270	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	intron	25330271	25330400	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25330401	25330477	1	+	2	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25330401	25330477	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	intron	25330478	25330609	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25330610	25330875	0.99	+	0	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25330610	25330875	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	intron	25330876	25331020	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25331021	25331077	1	+	1	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25331021	25331077	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	intron	25331078	25331177	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25331178	25331346	1	+	1	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25331178	25331346	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	intron	25331347	25331442	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25331443	25331500	1	+	0	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25331443	25331500	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	intron	25331501	25331617	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25331618	25331703	0.9	+	2	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25331618	25331703	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	intron	25331704	25331805	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25331806	25331862	1	+	0	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25331806	25331862	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	intron	25331863	25331960	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	CDS	25331961	25332071	1	+	0	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	exon	25331961	25332071	.	+	.	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
Ledus.S1	AUGUSTUS	stop_codon	25332072	25332074	.	+	0	transcript_id "Ledus.S1G302400.t1"; gene_id "Ledus.S1G302400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3176.t1 is derived from g611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6586703	6587995	.	+	.	Ledus.S1G059700
Ledus.S1	AUGUSTUS	transcript	6586703	6587995	.	+	.	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	start_codon	6586703	6586705	.	+	0	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	CDS	6586703	6586906	0.98	+	0	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	exon	6586703	6586906	.	+	.	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	intron	6586907	6587124	.	+	.	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	CDS	6587125	6587249	1	+	0	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	exon	6587125	6587249	.	+	.	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	intron	6587250	6587394	.	+	.	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	CDS	6587395	6587476	0.68	+	1	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	exon	6587395	6587476	.	+	.	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	intron	6587477	6587584	.	+	.	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	CDS	6587585	6587710	0.95	+	0	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	exon	6587585	6587710	.	+	.	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	intron	6587711	6587827	.	+	.	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	CDS	6587828	6587995	1	+	0	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	exon	6587828	6587995	.	+	.	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
Ledus.S1	AUGUSTUS	stop_codon	6587996	6587998	.	+	0	transcript_id "Ledus.S1G059700.t1"; gene_id "Ledus.S1G059700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2061.t1 is derived from g8924.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14392140	14392513	.	+	.	Ledus.S2G194300
Ledus.S2	AUGUSTUS	transcript	14392140	14392513	.	+	.	transcript_id "Ledus.S2G194300.t1"; gene_id "Ledus.S2G194300"
Ledus.S2	AUGUSTUS	start_codon	14392140	14392142	.	+	0	transcript_id "Ledus.S2G194300.t1"; gene_id "Ledus.S2G194300"
Ledus.S2	AUGUSTUS	CDS	14392140	14392324	0.87	+	0	transcript_id "Ledus.S2G194300.t1"; gene_id "Ledus.S2G194300"
Ledus.S2	AUGUSTUS	exon	14392140	14392324	.	+	.	transcript_id "Ledus.S2G194300.t1"; gene_id "Ledus.S2G194300"
Ledus.S2	AUGUSTUS	intron	14392325	14392455	.	+	.	transcript_id "Ledus.S2G194300.t1"; gene_id "Ledus.S2G194300"
Ledus.S2	AUGUSTUS	CDS	14392456	14392513	0.89	+	1	transcript_id "Ledus.S2G194300.t1"; gene_id "Ledus.S2G194300"
Ledus.S2	AUGUSTUS	exon	14392456	14392513	.	+	.	transcript_id "Ledus.S2G194300.t1"; gene_id "Ledus.S2G194300"
Ledus.S2	AUGUSTUS	stop_codon	14392514	14392516	.	+	0	transcript_id "Ledus.S2G194300.t1"; gene_id "Ledus.S2G194300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6488.t1 is derived from g3931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31594633	31596960	.	+	.	Ledus.S1G390900
Ledus.S1	AUGUSTUS	transcript	31594633	31596960	.	+	.	transcript_id "Ledus.S1G390900.t1"; gene_id "Ledus.S1G390900"
Ledus.S1	AUGUSTUS	start_codon	31594633	31594635	.	+	0	transcript_id "Ledus.S1G390900.t1"; gene_id "Ledus.S1G390900"
Ledus.S1	AUGUSTUS	CDS	31594633	31596960	0.99	+	0	transcript_id "Ledus.S1G390900.t1"; gene_id "Ledus.S1G390900"
Ledus.S1	AUGUSTUS	exon	31594633	31596960	.	+	.	transcript_id "Ledus.S1G390900.t1"; gene_id "Ledus.S1G390900"
Ledus.S1	AUGUSTUS	stop_codon	31596961	31596963	.	+	0	transcript_id "Ledus.S1G390900.t1"; gene_id "Ledus.S1G390900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7126.t1 is derived from g6657.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1691742	1693728	.	-	.	Ledus.C7G018700
Ledus.C7	AUGUSTUS	transcript	1691742	1693728	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	stop_codon	1691739	1691741	.	-	0	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	CDS	1691742	1691820	1	-	1	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	exon	1691742	1691820	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	intron	1691821	1691902	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	CDS	1691903	1692081	0.7	-	0	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	exon	1691903	1692081	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	intron	1692082	1692159	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	CDS	1692160	1692325	0.74	-	1	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	exon	1692160	1692325	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	intron	1692326	1692431	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	CDS	1692432	1692516	1	-	2	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	exon	1692432	1692516	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	intron	1692517	1692633	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	CDS	1692634	1692739	0.82	-	0	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	exon	1692634	1692739	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	intron	1692740	1692831	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	CDS	1692832	1692933	0.94	-	0	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	exon	1692832	1692933	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	intron	1692934	1693019	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	CDS	1693020	1693072	0.66	-	2	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	exon	1693020	1693072	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	intron	1693073	1693176	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	CDS	1693177	1693357	0.58	-	0	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	exon	1693177	1693357	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	intron	1693358	1693440	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	CDS	1693441	1693728	1	-	0	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	exon	1693441	1693728	.	-	.	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
Ledus.C7	AUGUSTUS	start_codon	1693726	1693728	.	-	0	transcript_id "Ledus.C7G018700.t1"; gene_id "Ledus.C7G018700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13057.t1 is derived from g6867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4292824	4293234	.	-	.	Ledus.S6G011900
Ledus.S6	AUGUSTUS	transcript	4292824	4293234	.	-	.	transcript_id "Ledus.S6G011900.t1"; gene_id "Ledus.S6G011900"
Ledus.S6	AUGUSTUS	stop_codon	4292821	4292823	.	-	0	transcript_id "Ledus.S6G011900.t1"; gene_id "Ledus.S6G011900"
Ledus.S6	AUGUSTUS	CDS	4292824	4293109	0.65	-	1	transcript_id "Ledus.S6G011900.t1"; gene_id "Ledus.S6G011900"
Ledus.S6	AUGUSTUS	exon	4292824	4293109	.	-	.	transcript_id "Ledus.S6G011900.t1"; gene_id "Ledus.S6G011900"
Ledus.S6	AUGUSTUS	intron	4293110	4293211	.	-	.	transcript_id "Ledus.S6G011900.t1"; gene_id "Ledus.S6G011900"
Ledus.S6	AUGUSTUS	CDS	4293212	4293234	0.58	-	0	transcript_id "Ledus.S6G011900.t1"; gene_id "Ledus.S6G011900"
Ledus.S6	AUGUSTUS	exon	4293212	4293234	.	-	.	transcript_id "Ledus.S6G011900.t1"; gene_id "Ledus.S6G011900"
Ledus.S6	AUGUSTUS	start_codon	4293232	4293234	.	-	0	transcript_id "Ledus.S6G011900.t1"; gene_id "Ledus.S6G011900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11508.t1 is derived from g5126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4964208	4969782	.	+	.	Ledus.S4G066400
Ledus.S4	AUGUSTUS	transcript	4964208	4969782	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	start_codon	4964208	4964210	.	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4964208	4964251	0.36	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4964208	4964251	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4964252	4964332	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4964333	4964475	0.99	+	1	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4964333	4964475	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4964476	4964577	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4964578	4964756	1	+	2	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4964578	4964756	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4964757	4965308	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4965309	4965398	1	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4965309	4965398	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4965399	4965475	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4965476	4965672	0.82	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4965476	4965672	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4965673	4966160	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4966161	4966377	0.39	+	1	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4966161	4966377	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4966378	4966456	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4966457	4966588	1	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4966457	4966588	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4966589	4966726	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4966727	4966834	1	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4966727	4966834	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4966835	4966908	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4966909	4966954	1	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4966909	4966954	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4966955	4967023	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4967024	4967133	1	+	2	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4967024	4967133	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4967134	4967228	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4967229	4967391	1	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4967229	4967391	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4967392	4967463	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4967464	4967624	1	+	2	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4967464	4967624	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4967625	4967704	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4967705	4967827	1	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4967705	4967827	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4967828	4967919	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4967920	4968122	1	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4967920	4968122	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4968123	4968200	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4968201	4968338	1	+	1	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4968201	4968338	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4968339	4968437	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4968438	4968576	1	+	1	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4968438	4968576	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4968577	4968672	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4968673	4968865	0.96	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4968673	4968865	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4968866	4968967	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4968968	4969063	0.95	+	2	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4968968	4969063	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4969064	4969142	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4969143	4969282	1	+	2	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4969143	4969282	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4969283	4969368	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4969369	4969782	1	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4969369	4969782	.	+	.	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	stop_codon	4969783	4969785	.	+	0	transcript_id "Ledus.S4G066400.t1"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	transcript	4964208	4969782	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	start_codon	4964208	4964210	.	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4964208	4964251	0.43	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4964208	4964251	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4964252	4964332	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4964333	4964475	1	+	1	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4964333	4964475	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4964476	4964577	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4964578	4964756	0.98	+	2	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4964578	4964756	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4964757	4965260	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4965261	4965281	0.68	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4965261	4965281	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4965282	4965338	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4965339	4965398	0.68	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4965339	4965398	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4965399	4965475	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4965476	4965672	0.83	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4965476	4965672	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4965673	4966160	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4966161	4966377	0.51	+	1	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4966161	4966377	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4966378	4966456	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4966457	4966588	1	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4966457	4966588	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4966589	4966726	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4966727	4966834	1	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4966727	4966834	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4966835	4966908	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4966909	4966954	1	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4966909	4966954	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4966955	4967023	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4967024	4967133	1	+	2	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4967024	4967133	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4967134	4967228	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4967229	4967391	1	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4967229	4967391	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4967392	4967463	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4967464	4967624	1	+	2	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4967464	4967624	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4967625	4967704	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4967705	4967827	1	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4967705	4967827	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4967828	4967919	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4967920	4968122	1	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4967920	4968122	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4968123	4968200	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4968201	4968338	1	+	1	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4968201	4968338	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4968339	4968437	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4968438	4968576	1	+	1	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4968438	4968576	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4968577	4968672	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4968673	4968865	0.89	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4968673	4968865	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4968866	4968967	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4968968	4969063	0.99	+	2	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4968968	4969063	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4969064	4969142	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4969143	4969282	1	+	2	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4969143	4969282	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	intron	4969283	4969368	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	CDS	4969369	4969782	1	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	exon	4969369	4969782	.	+	.	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
Ledus.S4	AUGUSTUS	stop_codon	4969783	4969785	.	+	0	transcript_id "Ledus.S4G066400.t2"; gene_id "Ledus.S4G066400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg765.t1 is derived from g7626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4868890	4869889	.	+	.	Ledus.S2G064700
Ledus.S2	AUGUSTUS	transcript	4868890	4869889	.	+	.	transcript_id "Ledus.S2G064700.t1"; gene_id "Ledus.S2G064700"
Ledus.S2	AUGUSTUS	start_codon	4868890	4868892	.	+	0	transcript_id "Ledus.S2G064700.t1"; gene_id "Ledus.S2G064700"
Ledus.S2	AUGUSTUS	CDS	4868890	4869264	1	+	0	transcript_id "Ledus.S2G064700.t1"; gene_id "Ledus.S2G064700"
Ledus.S2	AUGUSTUS	exon	4868890	4869264	.	+	.	transcript_id "Ledus.S2G064700.t1"; gene_id "Ledus.S2G064700"
Ledus.S2	AUGUSTUS	intron	4869265	4869358	.	+	.	transcript_id "Ledus.S2G064700.t1"; gene_id "Ledus.S2G064700"
Ledus.S2	AUGUSTUS	CDS	4869359	4869889	1	+	0	transcript_id "Ledus.S2G064700.t1"; gene_id "Ledus.S2G064700"
Ledus.S2	AUGUSTUS	exon	4869359	4869889	.	+	.	transcript_id "Ledus.S2G064700.t1"; gene_id "Ledus.S2G064700"
Ledus.S2	AUGUSTUS	stop_codon	4869890	4869892	.	+	0	transcript_id "Ledus.S2G064700.t1"; gene_id "Ledus.S2G064700"
# This transcript jg6664.t2 is derived from g4107.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6665.t1 is derived from g4108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32954745	32958479	.	+	.	Ledus.S1G408600
Ledus.S1	AUGUSTUS	transcript	32954745	32958479	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	start_codon	32954745	32954747	.	+	0	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32954745	32954853	0.45	+	0	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32954745	32954853	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32954854	32955057	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32955058	32955069	0.82	+	2	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32955058	32955069	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32955070	32955162	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32955163	32955290	0.92	+	2	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32955163	32955290	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32955291	32955563	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32955564	32955688	1	+	0	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32955564	32955688	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32955689	32955881	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32955882	32955975	1	+	1	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32955882	32955975	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32955976	32956132	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32956133	32956358	1	+	0	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32956133	32956358	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32956359	32956514	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32956515	32956651	1	+	2	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32956515	32956651	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32956652	32956746	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32956747	32956872	1	+	0	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32956747	32956872	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32956873	32957027	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32957028	32957056	1	+	0	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32957028	32957056	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32957057	32957154	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32957155	32957284	1	+	1	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32957155	32957284	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32957285	32957512	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32957513	32957643	1	+	0	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32957513	32957643	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32957644	32957796	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32957797	32957890	1	+	1	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32957797	32957890	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32957891	32957967	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32957968	32958045	1	+	0	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32957968	32958045	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32958046	32958129	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32958130	32958263	1	+	0	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32958130	32958263	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32958264	32958358	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32958359	32958479	0.98	+	1	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32958359	32958479	.	+	.	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	stop_codon	32958480	32958482	.	+	0	transcript_id "Ledus.S1G408600.t1"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	transcript	32954745	32958479	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	start_codon	32954745	32954747	.	+	0	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32954745	32954853	0.37	+	0	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32954745	32954853	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32954854	32955057	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32955058	32955072	0.58	+	2	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32955058	32955072	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32955073	32955162	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32955163	32955290	0.77	+	2	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32955163	32955290	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32955291	32955563	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32955564	32955688	1	+	0	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32955564	32955688	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32955689	32955881	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32955882	32955975	1	+	1	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32955882	32955975	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32955976	32956132	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32956133	32956358	1	+	0	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32956133	32956358	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32956359	32956514	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32956515	32956651	1	+	2	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32956515	32956651	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32956652	32956746	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32956747	32956872	1	+	0	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32956747	32956872	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32956873	32957027	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32957028	32957056	1	+	0	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32957028	32957056	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32957057	32957154	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32957155	32957284	1	+	1	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32957155	32957284	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32957285	32957512	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32957513	32957643	1	+	0	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32957513	32957643	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32957644	32957796	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32957797	32957890	1	+	1	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32957797	32957890	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32957891	32957967	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32957968	32958045	1	+	0	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32957968	32958045	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32958046	32958129	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32958130	32958263	1	+	0	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32958130	32958263	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	intron	32958264	32958358	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	CDS	32958359	32958479	0.97	+	1	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	exon	32958359	32958479	.	+	.	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
Ledus.S1	AUGUSTUS	stop_codon	32958480	32958482	.	+	0	transcript_id "Ledus.S1G408600.t2"; gene_id "Ledus.S1G408600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2522.t1 is derived from g9385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18573887	18574934	.	+	.	Ledus.S2G240400
Ledus.S2	AUGUSTUS	transcript	18573887	18574934	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	start_codon	18573887	18573889	.	+	0	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	CDS	18573887	18573937	1	+	0	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	exon	18573887	18573937	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	intron	18573938	18574022	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	CDS	18574023	18574095	1	+	0	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	exon	18574023	18574095	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	intron	18574096	18574188	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	CDS	18574189	18574313	1	+	2	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	exon	18574189	18574313	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	intron	18574314	18574392	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	CDS	18574393	18574492	1	+	0	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	exon	18574393	18574492	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	intron	18574493	18574577	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	CDS	18574578	18574644	1	+	2	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	exon	18574578	18574644	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	intron	18574645	18574711	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	CDS	18574712	18574790	1	+	1	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	exon	18574712	18574790	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	intron	18574791	18574886	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	CDS	18574887	18574934	1	+	0	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	exon	18574887	18574934	.	+	.	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
Ledus.S2	AUGUSTUS	stop_codon	18574935	18574937	.	+	0	transcript_id "Ledus.S2G240400.t1"; gene_id "Ledus.S2G240400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5725.t1 is derived from g3164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26230489	26232285	.	-	.	Ledus.S1G314600
Ledus.S1	AUGUSTUS	transcript	26230489	26232285	.	-	.	transcript_id "Ledus.S1G314600.t1"; gene_id "Ledus.S1G314600"
Ledus.S1	AUGUSTUS	stop_codon	26230486	26230488	.	-	0	transcript_id "Ledus.S1G314600.t1"; gene_id "Ledus.S1G314600"
Ledus.S1	AUGUSTUS	CDS	26230489	26232285	0.86	-	0	transcript_id "Ledus.S1G314600.t1"; gene_id "Ledus.S1G314600"
Ledus.S1	AUGUSTUS	exon	26230489	26232285	.	-	.	transcript_id "Ledus.S1G314600.t1"; gene_id "Ledus.S1G314600"
Ledus.S1	AUGUSTUS	start_codon	26232283	26232285	.	-	0	transcript_id "Ledus.S1G314600.t1"; gene_id "Ledus.S1G314600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3188.t1 is derived from g623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6669222	6672274	.	+	.	Ledus.S1G060900
Ledus.S1	AUGUSTUS	transcript	6669222	6672274	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	start_codon	6669222	6669224	.	+	0	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6669222	6669329	1	+	0	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6669222	6669329	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6669330	6669793	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6669794	6669905	1	+	0	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6669794	6669905	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6669906	6669993	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6669994	6670172	1	+	2	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6669994	6670172	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6670173	6670264	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6670265	6670426	1	+	0	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6670265	6670426	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6670427	6670517	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6670518	6670627	0.99	+	0	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6670518	6670627	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6670628	6670734	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6670735	6670873	0.99	+	1	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6670735	6670873	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6670874	6671032	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6671033	6671258	1	+	0	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6671033	6671258	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6671259	6671354	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6671355	6671403	1	+	2	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6671355	6671403	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6671404	6671596	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6671597	6671810	1	+	1	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6671597	6671810	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6671811	6671888	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6671889	6672047	1	+	0	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6671889	6672047	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6672048	6672136	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6672137	6672274	0.56	+	0	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6672137	6672274	.	+	.	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	stop_codon	6672275	6672277	.	+	0	transcript_id "Ledus.S1G060900.t1"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	transcript	6669222	6672274	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	start_codon	6669222	6669224	.	+	0	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6669222	6669329	0.99	+	0	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6669222	6669329	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6669330	6669793	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6669794	6669905	1	+	0	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6669794	6669905	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6669906	6669993	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6669994	6670172	1	+	2	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6669994	6670172	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6670173	6670264	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6670265	6670363	1	+	0	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6670265	6670363	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6670364	6670517	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6670518	6670627	1	+	0	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6670518	6670627	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6670628	6670734	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6670735	6670873	1	+	1	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6670735	6670873	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6670874	6671032	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6671033	6671258	1	+	0	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6671033	6671258	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6671259	6671354	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6671355	6671403	1	+	2	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6671355	6671403	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6671404	6671596	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6671597	6671810	1	+	1	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6671597	6671810	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6671811	6671888	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6671889	6672047	1	+	0	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6671889	6672047	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	intron	6672048	6672136	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	CDS	6672137	6672274	0.52	+	0	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	exon	6672137	6672274	.	+	.	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
Ledus.S1	AUGUSTUS	stop_codon	6672275	6672277	.	+	0	transcript_id "Ledus.S1G060900.t2"; gene_id "Ledus.S1G060900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg812.t1 is derived from g7673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5251607	5252939	.	-	.	Ledus.S2G069400
Ledus.S2	AUGUSTUS	transcript	5251607	5252939	.	-	.	transcript_id "Ledus.S2G069400.t1"; gene_id "Ledus.S2G069400"
Ledus.S2	AUGUSTUS	stop_codon	5251604	5251606	.	-	0	transcript_id "Ledus.S2G069400.t1"; gene_id "Ledus.S2G069400"
Ledus.S2	AUGUSTUS	CDS	5251607	5252521	1	-	0	transcript_id "Ledus.S2G069400.t1"; gene_id "Ledus.S2G069400"
Ledus.S2	AUGUSTUS	exon	5251607	5252521	.	-	.	transcript_id "Ledus.S2G069400.t1"; gene_id "Ledus.S2G069400"
Ledus.S2	AUGUSTUS	intron	5252522	5252594	.	-	.	transcript_id "Ledus.S2G069400.t1"; gene_id "Ledus.S2G069400"
Ledus.S2	AUGUSTUS	CDS	5252595	5252939	1	-	0	transcript_id "Ledus.S2G069400.t1"; gene_id "Ledus.S2G069400"
Ledus.S2	AUGUSTUS	exon	5252595	5252939	.	-	.	transcript_id "Ledus.S2G069400.t1"; gene_id "Ledus.S2G069400"
Ledus.S2	AUGUSTUS	start_codon	5252937	5252939	.	-	0	transcript_id "Ledus.S2G069400.t1"; gene_id "Ledus.S2G069400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1293.t1 is derived from g8154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9132356	9133641	.	+	.	Ledus.S2G117500
Ledus.S2	AUGUSTUS	transcript	9132356	9133641	.	+	.	transcript_id "Ledus.S2G117500.t1"; gene_id "Ledus.S2G117500"
Ledus.S2	AUGUSTUS	start_codon	9132356	9132358	.	+	0	transcript_id "Ledus.S2G117500.t1"; gene_id "Ledus.S2G117500"
Ledus.S2	AUGUSTUS	CDS	9132356	9132766	0.96	+	0	transcript_id "Ledus.S2G117500.t1"; gene_id "Ledus.S2G117500"
Ledus.S2	AUGUSTUS	exon	9132356	9132766	.	+	.	transcript_id "Ledus.S2G117500.t1"; gene_id "Ledus.S2G117500"
Ledus.S2	AUGUSTUS	intron	9132767	9133064	.	+	.	transcript_id "Ledus.S2G117500.t1"; gene_id "Ledus.S2G117500"
Ledus.S2	AUGUSTUS	CDS	9133065	9133322	1	+	0	transcript_id "Ledus.S2G117500.t1"; gene_id "Ledus.S2G117500"
Ledus.S2	AUGUSTUS	exon	9133065	9133322	.	+	.	transcript_id "Ledus.S2G117500.t1"; gene_id "Ledus.S2G117500"
Ledus.S2	AUGUSTUS	intron	9133323	9133443	.	+	.	transcript_id "Ledus.S2G117500.t1"; gene_id "Ledus.S2G117500"
Ledus.S2	AUGUSTUS	CDS	9133444	9133641	1	+	0	transcript_id "Ledus.S2G117500.t1"; gene_id "Ledus.S2G117500"
Ledus.S2	AUGUSTUS	exon	9133444	9133641	.	+	.	transcript_id "Ledus.S2G117500.t1"; gene_id "Ledus.S2G117500"
Ledus.S2	AUGUSTUS	stop_codon	9133642	9133644	.	+	0	transcript_id "Ledus.S2G117500.t1"; gene_id "Ledus.S2G117500"
# This transcript jg10825.t2 is derived from g11857.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10826.t1 is derived from g11858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18075137	18080777	.	-	.	Ledus.S3G230300
Ledus.S3	AUGUSTUS	transcript	18075137	18080777	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	stop_codon	18075134	18075136	.	-	0	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	CDS	18075137	18077558	1	-	1	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	exon	18075137	18077558	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	intron	18077559	18077654	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	CDS	18077655	18077794	1	-	0	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	exon	18077655	18077794	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	intron	18077795	18077880	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	CDS	18077881	18077939	1	-	2	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	exon	18077881	18077939	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	intron	18077940	18078020	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	CDS	18078021	18078241	0.19	-	1	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	exon	18078021	18078241	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	intron	18078242	18078643	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	CDS	18078644	18078995	0.2	-	2	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	exon	18078644	18078995	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	intron	18078996	18079089	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	CDS	18079090	18079109	0.21	-	1	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	exon	18079090	18079109	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	intron	18079110	18080299	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	CDS	18080300	18080407	0.88	-	1	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	exon	18080300	18080407	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	intron	18080408	18080533	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	CDS	18080534	18080677	0.61	-	1	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	exon	18080534	18080677	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	intron	18080678	18080757	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	CDS	18080758	18080777	0.74	-	0	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	exon	18080758	18080777	.	-	.	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
Ledus.S3	AUGUSTUS	start_codon	18080775	18080777	.	-	0	transcript_id "Ledus.S3G230300.t1"; gene_id "Ledus.S3G230300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2953.t1 is derived from g388.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4843141	4844036	.	+	.	Ledus.S1G037400
Ledus.S1	AUGUSTUS	transcript	4843141	4844036	.	+	.	transcript_id "Ledus.S1G037400.t1"; gene_id "Ledus.S1G037400"
Ledus.S1	AUGUSTUS	start_codon	4843141	4843143	.	+	0	transcript_id "Ledus.S1G037400.t1"; gene_id "Ledus.S1G037400"
Ledus.S1	AUGUSTUS	CDS	4843141	4843240	0.43	+	0	transcript_id "Ledus.S1G037400.t1"; gene_id "Ledus.S1G037400"
Ledus.S1	AUGUSTUS	exon	4843141	4843240	.	+	.	transcript_id "Ledus.S1G037400.t1"; gene_id "Ledus.S1G037400"
Ledus.S1	AUGUSTUS	intron	4843241	4843680	.	+	.	transcript_id "Ledus.S1G037400.t1"; gene_id "Ledus.S1G037400"
Ledus.S1	AUGUSTUS	CDS	4843681	4844036	0.5	+	2	transcript_id "Ledus.S1G037400.t1"; gene_id "Ledus.S1G037400"
Ledus.S1	AUGUSTUS	exon	4843681	4844036	.	+	.	transcript_id "Ledus.S1G037400.t1"; gene_id "Ledus.S1G037400"
Ledus.S1	AUGUSTUS	stop_codon	4844037	4844039	.	+	0	transcript_id "Ledus.S1G037400.t1"; gene_id "Ledus.S1G037400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12739.t1 is derived from g6361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14168186	14168866	.	-	.	Ledus.S4G189500
Ledus.S4	AUGUSTUS	transcript	14168186	14168866	.	-	.	transcript_id "Ledus.S4G189500.t1"; gene_id "Ledus.S4G189500"
Ledus.S4	AUGUSTUS	stop_codon	14168183	14168185	.	-	0	transcript_id "Ledus.S4G189500.t1"; gene_id "Ledus.S4G189500"
Ledus.S4	AUGUSTUS	CDS	14168186	14168866	0.98	-	0	transcript_id "Ledus.S4G189500.t1"; gene_id "Ledus.S4G189500"
Ledus.S4	AUGUSTUS	exon	14168186	14168866	.	-	.	transcript_id "Ledus.S4G189500.t1"; gene_id "Ledus.S4G189500"
Ledus.S4	AUGUSTUS	start_codon	14168864	14168866	.	-	0	transcript_id "Ledus.S4G189500.t1"; gene_id "Ledus.S4G189500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11917.t1 is derived from g5536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7741054	7741416	.	+	.	Ledus.S4G107300
Ledus.S4	AUGUSTUS	transcript	7741054	7741416	.	+	.	transcript_id "Ledus.S4G107300.t1"; gene_id "Ledus.S4G107300"
Ledus.S4	AUGUSTUS	start_codon	7741054	7741056	.	+	0	transcript_id "Ledus.S4G107300.t1"; gene_id "Ledus.S4G107300"
Ledus.S4	AUGUSTUS	CDS	7741054	7741201	0.52	+	0	transcript_id "Ledus.S4G107300.t1"; gene_id "Ledus.S4G107300"
Ledus.S4	AUGUSTUS	exon	7741054	7741201	.	+	.	transcript_id "Ledus.S4G107300.t1"; gene_id "Ledus.S4G107300"
Ledus.S4	AUGUSTUS	intron	7741202	7741306	.	+	.	transcript_id "Ledus.S4G107300.t1"; gene_id "Ledus.S4G107300"
Ledus.S4	AUGUSTUS	CDS	7741307	7741416	0.55	+	2	transcript_id "Ledus.S4G107300.t1"; gene_id "Ledus.S4G107300"
Ledus.S4	AUGUSTUS	exon	7741307	7741416	.	+	.	transcript_id "Ledus.S4G107300.t1"; gene_id "Ledus.S4G107300"
Ledus.S4	AUGUSTUS	stop_codon	7741417	7741419	.	+	0	transcript_id "Ledus.S4G107300.t1"; gene_id "Ledus.S4G107300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6785.t1 is derived from g4229.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34136534	34138619	.	+	.	Ledus.S1G420600
Ledus.S1	AUGUSTUS	transcript	34136534	34138619	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	start_codon	34136534	34136536	.	+	0	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34136534	34136674	0.52	+	0	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34136534	34136674	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34136675	34136754	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34136755	34136790	0.55	+	0	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34136755	34136790	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34136791	34136868	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34136869	34137292	1	+	0	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34136869	34137292	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34137293	34137413	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34137414	34137464	1	+	2	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34137414	34137464	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34137465	34137546	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34137547	34137719	1	+	2	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34137547	34137719	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34137720	34137815	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34137816	34138051	1	+	0	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34137816	34138051	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34138052	34138149	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34138150	34138342	1	+	1	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34138150	34138342	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34138343	34138439	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34138440	34138619	1	+	0	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34138440	34138619	.	+	.	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	stop_codon	34138620	34138622	.	+	0	transcript_id "Ledus.S1G420600.t1"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	transcript	34136534	34138619	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	start_codon	34136534	34136536	.	+	0	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34136534	34136674	0.33	+	0	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34136534	34136674	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34136675	34136754	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34136755	34136778	0.54	+	0	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34136755	34136778	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34136779	34136868	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34136869	34137292	0.97	+	0	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34136869	34137292	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34137293	34137413	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34137414	34137464	1	+	2	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34137414	34137464	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34137465	34137546	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34137547	34137719	1	+	2	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34137547	34137719	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34137720	34137815	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34137816	34138051	1	+	0	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34137816	34138051	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34138052	34138149	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34138150	34138342	1	+	1	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34138150	34138342	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	intron	34138343	34138439	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	CDS	34138440	34138619	1	+	0	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	exon	34138440	34138619	.	+	.	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
Ledus.S1	AUGUSTUS	stop_codon	34138620	34138622	.	+	0	transcript_id "Ledus.S1G420600.t2"; gene_id "Ledus.S1G420600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11330.t1 is derived from g4948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3609332	3610132	.	-	.	Ledus.S4G048600
Ledus.S4	AUGUSTUS	transcript	3609332	3610132	.	-	.	transcript_id "Ledus.S4G048600.t1"; gene_id "Ledus.S4G048600"
Ledus.S4	AUGUSTUS	stop_codon	3609329	3609331	.	-	0	transcript_id "Ledus.S4G048600.t1"; gene_id "Ledus.S4G048600"
Ledus.S4	AUGUSTUS	CDS	3609332	3610132	0.98	-	0	transcript_id "Ledus.S4G048600.t1"; gene_id "Ledus.S4G048600"
Ledus.S4	AUGUSTUS	exon	3609332	3610132	.	-	.	transcript_id "Ledus.S4G048600.t1"; gene_id "Ledus.S4G048600"
Ledus.S4	AUGUSTUS	start_codon	3610130	3610132	.	-	0	transcript_id "Ledus.S4G048600.t1"; gene_id "Ledus.S4G048600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg615.t1 is derived from g7476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3667729	3675002	.	-	.	Ledus.S2G049700
Ledus.S2	AUGUSTUS	transcript	3667729	3675002	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	stop_codon	3667726	3667728	.	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3667729	3668595	0.88	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3667729	3668595	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3668596	3668702	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3668703	3670245	0.52	-	1	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3668703	3670245	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3670246	3670373	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3670374	3670543	0.24	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3670374	3670543	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3670544	3670988	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3670989	3671120	0.75	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3670989	3671120	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3671121	3671209	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3671210	3671278	1	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3671210	3671278	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3671279	3671365	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3671366	3671446	1	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3671366	3671446	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3671447	3671575	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3671576	3671650	1	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3671576	3671650	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3671651	3671749	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3671750	3671948	0.99	-	1	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3671750	3671948	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3671949	3672070	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3672071	3672126	1	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3672071	3672126	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3672127	3672252	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3672253	3672300	1	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3672253	3672300	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3672301	3672471	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3672472	3672678	1	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3672472	3672678	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3672679	3672775	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3672776	3672940	0.99	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3672776	3672940	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3672941	3673493	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3673494	3673721	0.98	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3673494	3673721	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3673722	3673845	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3673846	3674175	1	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3673846	3674175	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	intron	3674176	3674249	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	CDS	3674250	3675002	0.98	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	exon	3674250	3675002	.	-	.	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
Ledus.S2	AUGUSTUS	start_codon	3675000	3675002	.	-	0	transcript_id "Ledus.S2G049700.t1"; gene_id "Ledus.S2G049700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1693.t1 is derived from g8554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11867362	11867688	.	+	.	Ledus.S2G157500
Ledus.S2	AUGUSTUS	transcript	11867362	11867688	.	+	.	transcript_id "Ledus.S2G157500.t1"; gene_id "Ledus.S2G157500"
Ledus.S2	AUGUSTUS	start_codon	11867362	11867364	.	+	0	transcript_id "Ledus.S2G157500.t1"; gene_id "Ledus.S2G157500"
Ledus.S2	AUGUSTUS	CDS	11867362	11867688	0.88	+	0	transcript_id "Ledus.S2G157500.t1"; gene_id "Ledus.S2G157500"
Ledus.S2	AUGUSTUS	exon	11867362	11867688	.	+	.	transcript_id "Ledus.S2G157500.t1"; gene_id "Ledus.S2G157500"
Ledus.S2	AUGUSTUS	stop_codon	11867689	11867691	.	+	0	transcript_id "Ledus.S2G157500.t1"; gene_id "Ledus.S2G157500"
# This transcript jg11196.t2 is derived from g4814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11197.t1 is derived from g4815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2660179	2660901	.	-	.	Ledus.S4G035300
Ledus.S4	AUGUSTUS	transcript	2660179	2660901	.	-	.	transcript_id "Ledus.S4G035300.t1"; gene_id "Ledus.S4G035300"
Ledus.S4	AUGUSTUS	stop_codon	2660176	2660178	.	-	0	transcript_id "Ledus.S4G035300.t1"; gene_id "Ledus.S4G035300"
Ledus.S4	AUGUSTUS	CDS	2660179	2660901	0.59	-	0	transcript_id "Ledus.S4G035300.t1"; gene_id "Ledus.S4G035300"
Ledus.S4	AUGUSTUS	exon	2660179	2660901	.	-	.	transcript_id "Ledus.S4G035300.t1"; gene_id "Ledus.S4G035300"
Ledus.S4	AUGUSTUS	start_codon	2660899	2660901	.	-	0	transcript_id "Ledus.S4G035300.t1"; gene_id "Ledus.S4G035300"
# This transcript jg6412.t2 is derived from g3855.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6413.t1 is derived from g3856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31125507	31127828	.	+	.	Ledus.S1G383400
Ledus.S1	AUGUSTUS	transcript	31125507	31127828	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	start_codon	31125507	31125509	.	+	0	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	CDS	31125507	31125878	0.91	+	0	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	exon	31125507	31125878	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	intron	31125879	31125985	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	CDS	31125986	31126184	0.88	+	0	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	exon	31125986	31126184	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	intron	31126185	31126275	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	CDS	31126276	31126342	1	+	2	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	exon	31126276	31126342	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	intron	31126343	31126407	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	CDS	31126408	31126471	1	+	1	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	exon	31126408	31126471	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	intron	31126472	31126601	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	CDS	31126602	31126682	1	+	0	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	exon	31126602	31126682	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	intron	31126683	31126783	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	CDS	31126784	31126870	1	+	0	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	exon	31126784	31126870	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	intron	31126871	31126963	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	CDS	31126964	31127040	0.65	+	0	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	exon	31126964	31127040	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	intron	31127041	31127225	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	CDS	31127226	31127274	0.99	+	1	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	exon	31127226	31127274	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	intron	31127275	31127374	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	CDS	31127375	31127499	0.99	+	0	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	exon	31127375	31127499	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	intron	31127500	31127614	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	CDS	31127615	31127828	0.99	+	1	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	exon	31127615	31127828	.	+	.	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
Ledus.S1	AUGUSTUS	stop_codon	31127829	31127831	.	+	0	transcript_id "Ledus.S1G383400.t1"; gene_id "Ledus.S1G383400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11624.t1 is derived from g5242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5617708	5618124	.	+	.	Ledus.S4G078000
Ledus.S4	AUGUSTUS	transcript	5617708	5618124	.	+	.	transcript_id "Ledus.S4G078000.t1"; gene_id "Ledus.S4G078000"
Ledus.S4	AUGUSTUS	start_codon	5617708	5617710	.	+	0	transcript_id "Ledus.S4G078000.t1"; gene_id "Ledus.S4G078000"
Ledus.S4	AUGUSTUS	CDS	5617708	5618124	0.88	+	0	transcript_id "Ledus.S4G078000.t1"; gene_id "Ledus.S4G078000"
Ledus.S4	AUGUSTUS	exon	5617708	5618124	.	+	.	transcript_id "Ledus.S4G078000.t1"; gene_id "Ledus.S4G078000"
Ledus.S4	AUGUSTUS	stop_codon	5618125	5618127	.	+	0	transcript_id "Ledus.S4G078000.t1"; gene_id "Ledus.S4G078000"
# This transcript jg2816.t2 is derived from g250.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2817.t1 is derived from g251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3919107	3921596	.	+	.	Ledus.S1G023800
Ledus.S1	AUGUSTUS	transcript	3919107	3921596	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	start_codon	3919107	3919109	.	+	0	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	CDS	3919107	3919317	0.66	+	0	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	exon	3919107	3919317	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	intron	3919318	3919405	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	CDS	3919406	3919867	1	+	2	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	exon	3919406	3919867	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	intron	3919868	3919949	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	CDS	3919950	3920044	1	+	2	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	exon	3919950	3920044	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	intron	3920045	3920170	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	CDS	3920171	3920254	1	+	0	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	exon	3920171	3920254	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	intron	3920255	3920362	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	CDS	3920363	3920440	1	+	0	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	exon	3920363	3920440	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	intron	3920441	3920532	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	CDS	3920533	3920733	1	+	0	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	exon	3920533	3920733	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	intron	3920734	3920824	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	CDS	3920825	3920932	1	+	0	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	exon	3920825	3920932	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	intron	3920933	3921026	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	CDS	3921027	3921101	1	+	0	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	exon	3921027	3921101	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	intron	3921102	3921182	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	CDS	3921183	3921388	1	+	0	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	exon	3921183	3921388	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	intron	3921389	3921469	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	CDS	3921470	3921596	0.94	+	1	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	exon	3921470	3921596	.	+	.	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
Ledus.S1	AUGUSTUS	stop_codon	3921597	3921599	.	+	0	transcript_id "Ledus.S1G023800.t1"; gene_id "Ledus.S1G023800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11722.t1 is derived from g5341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6265646	6272045	.	-	.	Ledus.S4G087800
Ledus.S4	AUGUSTUS	transcript	6265646	6272045	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	stop_codon	6265643	6265645	.	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6265646	6265828	0.89	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6265646	6265828	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6265829	6265999	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6266000	6266092	1	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6266000	6266092	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6266093	6266194	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6266195	6266242	0.95	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6266195	6266242	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6266243	6266352	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6266353	6266414	1	-	2	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6266353	6266414	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6266415	6266542	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6266543	6266660	1	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6266543	6266660	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6266661	6266813	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6266814	6266936	1	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6266814	6266936	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6266937	6267020	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6267021	6267103	1	-	2	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6267021	6267103	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6267104	6267182	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6267183	6267249	0.93	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6267183	6267249	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6267250	6267354	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6267355	6267459	1	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6267355	6267459	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6267460	6267615	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6267616	6267791	1	-	2	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6267616	6267791	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6267792	6267916	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6267917	6268016	1	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6267917	6268016	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6268017	6268121	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6268122	6268217	1	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6268122	6268217	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6268218	6268313	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6268314	6268379	1	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6268314	6268379	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6268380	6268526	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6268527	6268589	1	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6268527	6268589	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6268590	6268696	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6268697	6268774	1	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6268697	6268774	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6268775	6268943	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6268944	6269045	1	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6268944	6269045	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6269046	6269293	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6269294	6269428	0.9	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6269294	6269428	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6269429	6269577	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6269578	6269621	0.72	-	2	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6269578	6269621	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6269622	6269840	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6269841	6269904	0.76	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6269841	6269904	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6269905	6269995	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6269996	6270049	0.99	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6269996	6270049	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6270050	6270139	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6270140	6270194	0.96	-	1	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6270140	6270194	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6270195	6270309	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6270310	6270355	1	-	2	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6270310	6270355	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6270356	6270463	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6270464	6270494	0.99	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6270464	6270494	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6270495	6270608	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6270609	6270668	1	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6270609	6270668	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6270669	6270774	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6270775	6270892	0.89	-	1	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6270775	6270892	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6270893	6270988	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6270989	6271054	0.96	-	1	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6270989	6271054	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6271055	6271141	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6271142	6271815	0.98	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6271142	6271815	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6271816	6271958	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6271959	6272045	0.76	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6271959	6272045	.	-	.	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	start_codon	6272043	6272045	.	-	0	transcript_id "Ledus.S4G087800.t1"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	transcript	6265646	6272045	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	stop_codon	6265643	6265645	.	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6265646	6265894	0.89	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6265646	6265894	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6265895	6265999	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6266000	6266092	1	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6266000	6266092	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6266093	6266194	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6266195	6266242	0.94	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6266195	6266242	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6266243	6266352	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6266353	6266414	1	-	2	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6266353	6266414	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6266415	6266542	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6266543	6266660	1	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6266543	6266660	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6266661	6266813	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6266814	6266936	1	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6266814	6266936	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6266937	6267020	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6267021	6267103	1	-	2	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6267021	6267103	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6267104	6267182	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6267183	6267249	0.97	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6267183	6267249	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6267250	6267354	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6267355	6267459	0.99	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6267355	6267459	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6267460	6267615	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6267616	6267791	1	-	2	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6267616	6267791	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6267792	6267916	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6267917	6268016	0.99	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6267917	6268016	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6268017	6268121	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6268122	6268217	1	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6268122	6268217	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6268218	6268313	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6268314	6268379	1	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6268314	6268379	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6268380	6268526	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6268527	6268589	1	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6268527	6268589	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6268590	6268696	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6268697	6268774	1	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6268697	6268774	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6268775	6268943	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6268944	6269045	1	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6268944	6269045	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6269046	6269293	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6269294	6269428	0.88	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6269294	6269428	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6269429	6269577	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6269578	6269621	0.72	-	2	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6269578	6269621	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6269622	6269840	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6269841	6269904	0.73	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6269841	6269904	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6269905	6269995	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6269996	6270049	0.99	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6269996	6270049	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6270050	6270139	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6270140	6270194	0.96	-	1	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6270140	6270194	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6270195	6270309	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6270310	6270355	0.99	-	2	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6270310	6270355	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6270356	6270463	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6270464	6270494	0.99	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6270464	6270494	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6270495	6270608	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6270609	6270668	1	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6270609	6270668	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6270669	6270774	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6270775	6270892	0.84	-	1	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6270775	6270892	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6270893	6270988	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6270989	6271054	0.96	-	1	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6270989	6271054	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6271055	6271141	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6271142	6271815	0.99	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6271142	6271815	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	intron	6271816	6271958	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	CDS	6271959	6272045	0.82	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	exon	6271959	6272045	.	-	.	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
Ledus.S4	AUGUSTUS	start_codon	6272043	6272045	.	-	0	transcript_id "Ledus.S4G087800.t2"; gene_id "Ledus.S4G087800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9365.t1 is derived from g10395.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6391945	6392310	.	-	.	Ledus.S3G084200
Ledus.S3	AUGUSTUS	transcript	6391945	6392310	.	-	.	transcript_id "Ledus.S3G084200.t1"; gene_id "Ledus.S3G084200"
Ledus.S3	AUGUSTUS	stop_codon	6391942	6391944	.	-	0	transcript_id "Ledus.S3G084200.t1"; gene_id "Ledus.S3G084200"
Ledus.S3	AUGUSTUS	CDS	6391945	6392310	0.57	-	0	transcript_id "Ledus.S3G084200.t1"; gene_id "Ledus.S3G084200"
Ledus.S3	AUGUSTUS	exon	6391945	6392310	.	-	.	transcript_id "Ledus.S3G084200.t1"; gene_id "Ledus.S3G084200"
Ledus.S3	AUGUSTUS	start_codon	6392308	6392310	.	-	0	transcript_id "Ledus.S3G084200.t1"; gene_id "Ledus.S3G084200"
# This transcript jg4480.t2 is derived from g1916.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4481.t1 is derived from g1917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17270944	17271290	.	+	.	Ledus.S1G190200
Ledus.S1	AUGUSTUS	transcript	17270944	17271290	.	+	.	transcript_id "Ledus.S1G190200.t1"; gene_id "Ledus.S1G190200"
Ledus.S1	AUGUSTUS	start_codon	17270944	17270946	.	+	0	transcript_id "Ledus.S1G190200.t1"; gene_id "Ledus.S1G190200"
Ledus.S1	AUGUSTUS	CDS	17270944	17271079	0.97	+	0	transcript_id "Ledus.S1G190200.t1"; gene_id "Ledus.S1G190200"
Ledus.S1	AUGUSTUS	exon	17270944	17271079	.	+	.	transcript_id "Ledus.S1G190200.t1"; gene_id "Ledus.S1G190200"
Ledus.S1	AUGUSTUS	intron	17271080	17271189	.	+	.	transcript_id "Ledus.S1G190200.t1"; gene_id "Ledus.S1G190200"
Ledus.S1	AUGUSTUS	CDS	17271190	17271290	0.99	+	2	transcript_id "Ledus.S1G190200.t1"; gene_id "Ledus.S1G190200"
Ledus.S1	AUGUSTUS	exon	17271190	17271290	.	+	.	transcript_id "Ledus.S1G190200.t1"; gene_id "Ledus.S1G190200"
Ledus.S1	AUGUSTUS	stop_codon	17271291	17271293	.	+	0	transcript_id "Ledus.S1G190200.t1"; gene_id "Ledus.S1G190200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3464.t1 is derived from g899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8500531	8500983	.	+	.	Ledus.S1G088500
Ledus.S1	AUGUSTUS	transcript	8500531	8500983	.	+	.	transcript_id "Ledus.S1G088500.t1"; gene_id "Ledus.S1G088500"
Ledus.S1	AUGUSTUS	start_codon	8500531	8500533	.	+	0	transcript_id "Ledus.S1G088500.t1"; gene_id "Ledus.S1G088500"
Ledus.S1	AUGUSTUS	CDS	8500531	8500983	0.8	+	0	transcript_id "Ledus.S1G088500.t1"; gene_id "Ledus.S1G088500"
Ledus.S1	AUGUSTUS	exon	8500531	8500983	.	+	.	transcript_id "Ledus.S1G088500.t1"; gene_id "Ledus.S1G088500"
Ledus.S1	AUGUSTUS	stop_codon	8500984	8500986	.	+	0	transcript_id "Ledus.S1G088500.t1"; gene_id "Ledus.S1G088500"
# This transcript jg1740.t2 is derived from g8602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1741.t1 is derived from g8603.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12290680	12292835	.	-	.	Ledus.S2G162300
Ledus.S2	AUGUSTUS	transcript	12290680	12292835	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	stop_codon	12290677	12290679	.	-	0	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	CDS	12290680	12290877	0.42	-	0	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	exon	12290680	12290877	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	intron	12290878	12290982	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	CDS	12290983	12291100	1	-	1	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	exon	12290983	12291100	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	intron	12291101	12291190	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	CDS	12291191	12291351	1	-	0	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	exon	12291191	12291351	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	intron	12291352	12291451	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	CDS	12291452	12291593	1	-	1	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	exon	12291452	12291593	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	intron	12291594	12291690	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	CDS	12291691	12291769	0.98	-	2	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	exon	12291691	12291769	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	intron	12291770	12291883	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	CDS	12291884	12292014	0.98	-	1	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	exon	12291884	12292014	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	intron	12292015	12292122	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	CDS	12292123	12292225	1	-	2	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	exon	12292123	12292225	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	intron	12292226	12292305	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	CDS	12292306	12292513	1	-	0	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	exon	12292306	12292513	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	intron	12292514	12292601	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	CDS	12292602	12292835	0.84	-	0	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	exon	12292602	12292835	.	-	.	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
Ledus.S2	AUGUSTUS	start_codon	12292833	12292835	.	-	0	transcript_id "Ledus.S2G162300.t1"; gene_id "Ledus.S2G162300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3496.t1 is derived from g931.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8771330	8773094	.	-	.	Ledus.S1G091700
Ledus.S1	AUGUSTUS	transcript	8771330	8773094	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	stop_codon	8771327	8771329	.	-	0	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	CDS	8771330	8771473	1	-	0	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	exon	8771330	8771473	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	intron	8771474	8771557	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	CDS	8771558	8771656	1	-	0	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	exon	8771558	8771656	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	intron	8771657	8771738	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	CDS	8771739	8771813	1	-	0	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	exon	8771739	8771813	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	intron	8771814	8771911	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	CDS	8771912	8772012	1	-	2	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	exon	8771912	8772012	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	intron	8772013	8772322	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	CDS	8772323	8772446	1	-	0	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	exon	8772323	8772446	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	intron	8772447	8772522	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	CDS	8772523	8772729	1	-	0	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	exon	8772523	8772729	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	intron	8772730	8772815	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	CDS	8772816	8772923	1	-	0	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	exon	8772816	8772923	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	intron	8772924	8773019	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	CDS	8773020	8773094	0.43	-	0	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	exon	8773020	8773094	.	-	.	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
Ledus.S1	AUGUSTUS	start_codon	8773092	8773094	.	-	0	transcript_id "Ledus.S1G091700.t1"; gene_id "Ledus.S1G091700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2108.t1 is derived from g8971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14767880	14769452	.	-	.	Ledus.S2G199000
Ledus.S2	AUGUSTUS	transcript	14767880	14769452	.	-	.	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	stop_codon	14767877	14767879	.	-	0	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	CDS	14767880	14768392	0.83	-	0	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	exon	14767880	14768392	.	-	.	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	intron	14768393	14768545	.	-	.	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	CDS	14768546	14768922	0.24	-	2	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	exon	14768546	14768922	.	-	.	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	intron	14768923	14769096	.	-	.	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	CDS	14769097	14769153	0.76	-	2	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	exon	14769097	14769153	.	-	.	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	intron	14769154	14769262	.	-	.	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	CDS	14769263	14769452	0.6	-	0	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	exon	14769263	14769452	.	-	.	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
Ledus.S2	AUGUSTUS	start_codon	14769450	14769452	.	-	0	transcript_id "Ledus.S2G199000.t1"; gene_id "Ledus.S2G199000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3815.t1 is derived from g1251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12599053	12599482	.	-	.	Ledus.S1G123600
Ledus.S1	AUGUSTUS	transcript	12599053	12599482	.	-	.	transcript_id "Ledus.S1G123600.t1"; gene_id "Ledus.S1G123600"
Ledus.S1	AUGUSTUS	stop_codon	12599050	12599052	.	-	0	transcript_id "Ledus.S1G123600.t1"; gene_id "Ledus.S1G123600"
Ledus.S1	AUGUSTUS	CDS	12599053	12599291	1	-	2	transcript_id "Ledus.S1G123600.t1"; gene_id "Ledus.S1G123600"
Ledus.S1	AUGUSTUS	exon	12599053	12599291	.	-	.	transcript_id "Ledus.S1G123600.t1"; gene_id "Ledus.S1G123600"
Ledus.S1	AUGUSTUS	intron	12599292	12599355	.	-	.	transcript_id "Ledus.S1G123600.t1"; gene_id "Ledus.S1G123600"
Ledus.S1	AUGUSTUS	CDS	12599356	12599482	1	-	0	transcript_id "Ledus.S1G123600.t1"; gene_id "Ledus.S1G123600"
Ledus.S1	AUGUSTUS	exon	12599356	12599482	.	-	.	transcript_id "Ledus.S1G123600.t1"; gene_id "Ledus.S1G123600"
Ledus.S1	AUGUSTUS	start_codon	12599480	12599482	.	-	0	transcript_id "Ledus.S1G123600.t1"; gene_id "Ledus.S1G123600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12592.t1 is derived from g6214.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13026903	13029151	.	-	.	Ledus.S4G174800
Ledus.S4	AUGUSTUS	transcript	13026903	13029151	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	stop_codon	13026900	13026902	.	-	0	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	CDS	13026903	13027236	0.97	-	1	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	exon	13026903	13027236	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	intron	13027237	13027356	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	CDS	13027357	13027515	0.97	-	1	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	exon	13027357	13027515	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	intron	13027516	13027621	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	CDS	13027622	13028011	1	-	1	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	exon	13027622	13028011	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	intron	13028012	13028357	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	CDS	13028358	13028439	0.6	-	2	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	exon	13028358	13028439	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	intron	13028440	13028536	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	CDS	13028537	13028549	0.6	-	0	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	exon	13028537	13028549	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	intron	13028550	13028708	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	CDS	13028709	13028791	0.54	-	2	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	exon	13028709	13028791	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	intron	13028792	13028856	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	CDS	13028857	13029151	0.33	-	0	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	exon	13028857	13029151	.	-	.	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
Ledus.S4	AUGUSTUS	start_codon	13029149	13029151	.	-	0	transcript_id "Ledus.S4G174800.t1"; gene_id "Ledus.S4G174800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6982.t1 is derived from g6514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	525547	529361	.	+	.	Ledus.C7G004400
Ledus.C7	AUGUSTUS	transcript	525547	529361	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	start_codon	525547	525549	.	+	0	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	CDS	525547	525863	1	+	0	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	exon	525547	525863	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	intron	525864	525985	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	CDS	525986	526156	1	+	1	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	exon	525986	526156	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	intron	526157	526280	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	CDS	526281	526416	1	+	1	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	exon	526281	526416	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	intron	526417	526593	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	CDS	526594	526695	1	+	0	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	exon	526594	526695	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	intron	526696	526780	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	CDS	526781	526900	1	+	0	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	exon	526781	526900	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	intron	526901	527060	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	CDS	527061	527153	0.87	+	0	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	exon	527061	527153	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	intron	527154	527244	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	CDS	527245	527585	0.98	+	0	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	exon	527245	527585	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	intron	527586	527659	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	CDS	527660	527905	0.94	+	1	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	exon	527660	527905	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	intron	527906	528001	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	CDS	528002	528326	0.95	+	1	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	exon	528002	528326	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	intron	528327	528427	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	CDS	528428	528661	1	+	0	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	exon	528428	528661	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	intron	528662	528812	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	CDS	528813	529361	0.33	+	0	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	exon	528813	529361	.	+	.	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
Ledus.C7	AUGUSTUS	stop_codon	529362	529364	.	+	0	transcript_id "Ledus.C7G004400.t1"; gene_id "Ledus.C7G004400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7372.t1 is derived from g12043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1633652	1635986	.	-	.	Ledus.S5G015000
Ledus.S5	AUGUSTUS	transcript	1633652	1635986	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	stop_codon	1633649	1633651	.	-	0	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	CDS	1633652	1633684	0.96	-	0	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	exon	1633652	1633684	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	intron	1633685	1633793	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	CDS	1633794	1633874	0.97	-	0	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	exon	1633794	1633874	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	intron	1633875	1633971	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	CDS	1633972	1634052	1	-	0	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	exon	1633972	1634052	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	intron	1634053	1634137	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	CDS	1634138	1634182	1	-	0	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	exon	1634138	1634182	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	intron	1634183	1634349	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	CDS	1634350	1634404	0.99	-	1	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	exon	1634350	1634404	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	intron	1634405	1634515	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	CDS	1634516	1634641	1	-	1	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	exon	1634516	1634641	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	intron	1634642	1634736	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	CDS	1634737	1634818	1	-	2	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	exon	1634737	1634818	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	intron	1634819	1635324	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	CDS	1635325	1635331	0.99	-	0	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	exon	1635325	1635331	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	intron	1635332	1635432	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	CDS	1635433	1635479	0.66	-	2	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	exon	1635433	1635479	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	intron	1635480	1635555	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	CDS	1635556	1635624	0.79	-	2	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	exon	1635556	1635624	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	intron	1635625	1635889	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	CDS	1635890	1635986	0.49	-	0	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	exon	1635890	1635986	.	-	.	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
Ledus.S5	AUGUSTUS	start_codon	1635984	1635986	.	-	0	transcript_id "Ledus.S5G015000.t1"; gene_id "Ledus.S5G015000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4420.t1 is derived from g1856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17031663	17034626	.	-	.	Ledus.S1G184100
Ledus.S1	AUGUSTUS	transcript	17031663	17034626	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	stop_codon	17031660	17031662	.	-	0	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	CDS	17031663	17032076	0.82	-	0	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	exon	17031663	17032076	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	intron	17032077	17032164	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	CDS	17032165	17032302	0.97	-	0	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	exon	17032165	17032302	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	intron	17032303	17032391	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	CDS	17032392	17032545	0.99	-	1	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	exon	17032392	17032545	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	intron	17032546	17032645	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	CDS	17032646	17032717	0.9	-	1	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	exon	17032646	17032717	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	intron	17032718	17032794	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	CDS	17032795	17032846	1	-	2	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	exon	17032795	17032846	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	intron	17032847	17032950	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	CDS	17032951	17033009	1	-	1	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	exon	17032951	17033009	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	intron	17033010	17033105	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	CDS	17033106	17033390	0.93	-	1	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	exon	17033106	17033390	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	intron	17033391	17033476	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	CDS	17033477	17033661	0.6	-	0	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	exon	17033477	17033661	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	intron	17033662	17034002	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	CDS	17034003	17034118	0.98	-	2	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	exon	17034003	17034118	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	intron	17034119	17034490	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	CDS	17034491	17034626	0.49	-	0	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	exon	17034491	17034626	.	-	.	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
Ledus.S1	AUGUSTUS	start_codon	17034624	17034626	.	-	0	transcript_id "Ledus.S1G184100.t1"; gene_id "Ledus.S1G184100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12147.t1 is derived from g5766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9916694	9917518	.	+	.	Ledus.S4G130300
Ledus.S4	AUGUSTUS	transcript	9916694	9917518	.	+	.	transcript_id "Ledus.S4G130300.t1"; gene_id "Ledus.S4G130300"
Ledus.S4	AUGUSTUS	start_codon	9916694	9916696	.	+	0	transcript_id "Ledus.S4G130300.t1"; gene_id "Ledus.S4G130300"
Ledus.S4	AUGUSTUS	CDS	9916694	9917518	0.43	+	0	transcript_id "Ledus.S4G130300.t1"; gene_id "Ledus.S4G130300"
Ledus.S4	AUGUSTUS	exon	9916694	9917518	.	+	.	transcript_id "Ledus.S4G130300.t1"; gene_id "Ledus.S4G130300"
Ledus.S4	AUGUSTUS	stop_codon	9917519	9917521	.	+	0	transcript_id "Ledus.S4G130300.t1"; gene_id "Ledus.S4G130300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2815.t1 is derived from g249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3911097	3914357	.	-	.	Ledus.S1G023600
Ledus.S1	AUGUSTUS	transcript	3911097	3914357	.	-	.	transcript_id "Ledus.S1G023600.t1"; gene_id "Ledus.S1G023600"
Ledus.S1	AUGUSTUS	stop_codon	3911094	3911096	.	-	0	transcript_id "Ledus.S1G023600.t1"; gene_id "Ledus.S1G023600"
Ledus.S1	AUGUSTUS	CDS	3911097	3914357	1	-	0	transcript_id "Ledus.S1G023600.t1"; gene_id "Ledus.S1G023600"
Ledus.S1	AUGUSTUS	exon	3911097	3914357	.	-	.	transcript_id "Ledus.S1G023600.t1"; gene_id "Ledus.S1G023600"
Ledus.S1	AUGUSTUS	start_codon	3914355	3914357	.	-	0	transcript_id "Ledus.S1G023600.t1"; gene_id "Ledus.S1G023600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13107.t1 is derived from g6917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5892525	5892731	.	-	.	Ledus.S6G016900
Ledus.S6	AUGUSTUS	transcript	5892525	5892731	.	-	.	transcript_id "Ledus.S6G016900.t1"; gene_id "Ledus.S6G016900"
Ledus.S6	AUGUSTUS	stop_codon	5892522	5892524	.	-	0	transcript_id "Ledus.S6G016900.t1"; gene_id "Ledus.S6G016900"
Ledus.S6	AUGUSTUS	CDS	5892525	5892731	0.51	-	0	transcript_id "Ledus.S6G016900.t1"; gene_id "Ledus.S6G016900"
Ledus.S6	AUGUSTUS	exon	5892525	5892731	.	-	.	transcript_id "Ledus.S6G016900.t1"; gene_id "Ledus.S6G016900"
Ledus.S6	AUGUSTUS	start_codon	5892729	5892731	.	-	0	transcript_id "Ledus.S6G016900.t1"; gene_id "Ledus.S6G016900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6940.t1 is derived from g6471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	4422	4652	.	-	.	Ledus.C7G000100
Ledus.C7	AUGUSTUS	transcript	4422	4652	.	-	.	transcript_id "Ledus.C7G000100.t1"; gene_id "Ledus.C7G000100"
Ledus.C7	AUGUSTUS	stop_codon	4419	4421	.	-	0	transcript_id "Ledus.C7G000100.t1"; gene_id "Ledus.C7G000100"
Ledus.C7	AUGUSTUS	CDS	4422	4652	0.85	-	0	transcript_id "Ledus.C7G000100.t1"; gene_id "Ledus.C7G000100"
Ledus.C7	AUGUSTUS	exon	4422	4652	.	-	.	transcript_id "Ledus.C7G000100.t1"; gene_id "Ledus.C7G000100"
Ledus.C7	AUGUSTUS	start_codon	4650	4652	.	-	0	transcript_id "Ledus.C7G000100.t1"; gene_id "Ledus.C7G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5701.t1 is derived from g3140.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26017566	26020397	.	+	.	Ledus.S1G312200
Ledus.S1	AUGUSTUS	transcript	26017566	26020397	.	+	.	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	start_codon	26017566	26017568	.	+	0	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	CDS	26017566	26017814	0.5	+	0	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	exon	26017566	26017814	.	+	.	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	intron	26017815	26017915	.	+	.	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	CDS	26017916	26019707	0.48	+	0	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	exon	26017916	26019707	.	+	.	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	intron	26019708	26019849	.	+	.	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	CDS	26019850	26020024	0.18	+	2	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	exon	26019850	26020024	.	+	.	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	intron	26020025	26020100	.	+	.	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	CDS	26020101	26020125	0.48	+	1	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	exon	26020101	26020125	.	+	.	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	intron	26020126	26020358	.	+	.	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	CDS	26020359	26020397	0.49	+	0	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	exon	26020359	26020397	.	+	.	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
Ledus.S1	AUGUSTUS	stop_codon	26020398	26020400	.	+	0	transcript_id "Ledus.S1G312200.t1"; gene_id "Ledus.S1G312200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8375.t1 is derived from g13047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11290227	11290502	.	-	.	Ledus.S5G115300
Ledus.S5	AUGUSTUS	transcript	11290227	11290502	.	-	.	transcript_id "Ledus.S5G115300.t1"; gene_id "Ledus.S5G115300"
Ledus.S5	AUGUSTUS	stop_codon	11290224	11290226	.	-	0	transcript_id "Ledus.S5G115300.t1"; gene_id "Ledus.S5G115300"
Ledus.S5	AUGUSTUS	CDS	11290227	11290502	1	-	0	transcript_id "Ledus.S5G115300.t1"; gene_id "Ledus.S5G115300"
Ledus.S5	AUGUSTUS	exon	11290227	11290502	.	-	.	transcript_id "Ledus.S5G115300.t1"; gene_id "Ledus.S5G115300"
Ledus.S5	AUGUSTUS	start_codon	11290500	11290502	.	-	0	transcript_id "Ledus.S5G115300.t1"; gene_id "Ledus.S5G115300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2192.t1 is derived from g9055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15874612	15875924	.	+	.	Ledus.S2G207400
Ledus.S2	AUGUSTUS	transcript	15874612	15875924	.	+	.	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	start_codon	15874612	15874614	.	+	0	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	CDS	15874612	15874723	0.9	+	0	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	exon	15874612	15874723	.	+	.	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	intron	15874724	15874816	.	+	.	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	CDS	15874817	15874827	1	+	2	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	exon	15874817	15874827	.	+	.	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	intron	15874828	15875040	.	+	.	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	CDS	15875041	15875229	1	+	0	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	exon	15875041	15875229	.	+	.	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	intron	15875230	15875709	.	+	.	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	CDS	15875710	15875758	1	+	0	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	exon	15875710	15875758	.	+	.	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	intron	15875759	15875904	.	+	.	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	CDS	15875905	15875924	1	+	2	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	exon	15875905	15875924	.	+	.	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
Ledus.S2	AUGUSTUS	stop_codon	15875925	15875927	.	+	0	transcript_id "Ledus.S2G207400.t1"; gene_id "Ledus.S2G207400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2933.t1 is derived from g368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4648488	4651555	.	-	.	Ledus.S1G035400
Ledus.S1	AUGUSTUS	transcript	4648488	4651555	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	stop_codon	4648485	4648487	.	-	0	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	CDS	4648488	4648658	1	-	0	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	exon	4648488	4648658	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	intron	4648659	4648760	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	CDS	4648761	4648878	1	-	1	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	exon	4648761	4648878	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	intron	4648879	4648952	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	CDS	4648953	4649179	1	-	0	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	exon	4648953	4649179	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	intron	4649180	4649268	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	CDS	4649269	4649562	1	-	0	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	exon	4649269	4649562	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	intron	4649563	4649647	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	CDS	4649648	4649733	1	-	2	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	exon	4649648	4649733	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	intron	4649734	4649815	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	CDS	4649816	4649908	1	-	2	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	exon	4649816	4649908	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	intron	4649909	4649980	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	CDS	4649981	4650076	1	-	2	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	exon	4649981	4650076	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	intron	4650077	4650150	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	CDS	4650151	4650258	1	-	2	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	exon	4650151	4650258	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	intron	4650259	4650340	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	CDS	4650341	4650502	0.48	-	2	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	exon	4650341	4650502	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	intron	4650503	4650563	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	CDS	4650564	4650627	0.72	-	0	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	exon	4650564	4650627	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	intron	4650628	4650704	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	CDS	4650705	4650719	0.53	-	0	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	exon	4650705	4650719	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	intron	4650720	4651330	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	CDS	4651331	4651555	0.59	-	0	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	exon	4651331	4651555	.	-	.	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
Ledus.S1	AUGUSTUS	start_codon	4651553	4651555	.	-	0	transcript_id "Ledus.S1G035400.t1"; gene_id "Ledus.S1G035400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10539.t1 is derived from g11569.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16013662	16015144	.	+	.	Ledus.S3G201600
Ledus.S3	AUGUSTUS	transcript	16013662	16015144	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	start_codon	16013662	16013664	.	+	0	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16013662	16013721	0.89	+	0	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16013662	16013721	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	intron	16013722	16013798	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16013799	16013964	1	+	0	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16013799	16013964	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	intron	16013965	16014072	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16014073	16014128	0.99	+	2	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16014073	16014128	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	intron	16014129	16014211	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16014212	16014330	1	+	0	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16014212	16014330	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	intron	16014331	16014544	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16014545	16014764	0.99	+	1	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16014545	16014764	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	intron	16014765	16014853	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16014854	16014974	1	+	0	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16014854	16014974	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	intron	16014975	16015058	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16015059	16015144	1	+	2	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16015059	16015144	.	+	.	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	stop_codon	16015145	16015147	.	+	0	transcript_id "Ledus.S3G201600.t1"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	transcript	16013662	16015144	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	start_codon	16013662	16013664	.	+	0	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16013662	16013721	0.85	+	0	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16013662	16013721	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	intron	16013722	16013798	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16013799	16013964	0.99	+	0	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16013799	16013964	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	intron	16013965	16014072	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16014073	16014128	1	+	2	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16014073	16014128	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	intron	16014129	16014211	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16014212	16014330	1	+	0	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16014212	16014330	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	intron	16014331	16014544	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16014545	16014764	1	+	1	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16014545	16014764	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	intron	16014765	16014853	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16014854	16014974	1	+	0	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16014854	16014974	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	intron	16014975	16015055	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	CDS	16015056	16015144	1	+	2	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	exon	16015056	16015144	.	+	.	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
Ledus.S3	AUGUSTUS	stop_codon	16015145	16015147	.	+	0	transcript_id "Ledus.S3G201600.t2"; gene_id "Ledus.S3G201600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9590.t1 is derived from g10620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8111480	8116677	.	+	.	Ledus.S3G106700
Ledus.S3	AUGUSTUS	transcript	8111480	8116677	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	start_codon	8111480	8111482	.	+	0	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8111480	8111684	0.54	+	0	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8111480	8111684	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8111685	8111808	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8111809	8112023	1	+	2	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8111809	8112023	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8112024	8112116	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8112117	8112274	1	+	0	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8112117	8112274	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8112275	8112425	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8112426	8112613	1	+	1	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8112426	8112613	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8112614	8112770	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8112771	8113023	0.94	+	2	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8112771	8113023	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8113024	8113133	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8113134	8113210	0.91	+	1	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8113134	8113210	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8113211	8113392	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8113393	8113572	1	+	2	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8113393	8113572	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8113573	8113688	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8113689	8113861	0.74	+	2	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8113689	8113861	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8113862	8114229	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8114230	8114290	0.64	+	0	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8114230	8114290	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8114291	8114433	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8114434	8114575	0.8	+	2	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8114434	8114575	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8114576	8114679	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8114680	8114830	0.99	+	1	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8114680	8114830	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8114831	8114910	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8114911	8115107	1	+	0	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8114911	8115107	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8115108	8115195	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8115196	8115717	1	+	1	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8115196	8115717	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8115718	8115815	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8115816	8115987	1	+	1	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8115816	8115987	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8115988	8116125	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8116126	8116263	1	+	0	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8116126	8116263	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8116264	8116346	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8116347	8116457	1	+	0	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8116347	8116457	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	intron	8116458	8116545	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	CDS	8116546	8116677	0.99	+	0	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	exon	8116546	8116677	.	+	.	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
Ledus.S3	AUGUSTUS	stop_codon	8116678	8116680	.	+	0	transcript_id "Ledus.S3G106700.t1"; gene_id "Ledus.S3G106700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9837.t1 is derived from g10867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10419114	10419908	.	+	.	Ledus.S3G131400
Ledus.S3	AUGUSTUS	transcript	10419114	10419908	.	+	.	transcript_id "Ledus.S3G131400.t1"; gene_id "Ledus.S3G131400"
Ledus.S3	AUGUSTUS	start_codon	10419114	10419116	.	+	0	transcript_id "Ledus.S3G131400.t1"; gene_id "Ledus.S3G131400"
Ledus.S3	AUGUSTUS	CDS	10419114	10419908	0.28	+	0	transcript_id "Ledus.S3G131400.t1"; gene_id "Ledus.S3G131400"
Ledus.S3	AUGUSTUS	exon	10419114	10419908	.	+	.	transcript_id "Ledus.S3G131400.t1"; gene_id "Ledus.S3G131400"
Ledus.S3	AUGUSTUS	stop_codon	10419909	10419911	.	+	0	transcript_id "Ledus.S3G131400.t1"; gene_id "Ledus.S3G131400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8886.t1 is derived from g9916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2834510	2834773	.	+	.	Ledus.S3G036300
Ledus.S3	AUGUSTUS	transcript	2834510	2834773	.	+	.	transcript_id "Ledus.S3G036300.t1"; gene_id "Ledus.S3G036300"
Ledus.S3	AUGUSTUS	start_codon	2834510	2834512	.	+	0	transcript_id "Ledus.S3G036300.t1"; gene_id "Ledus.S3G036300"
Ledus.S3	AUGUSTUS	CDS	2834510	2834773	0.63	+	0	transcript_id "Ledus.S3G036300.t1"; gene_id "Ledus.S3G036300"
Ledus.S3	AUGUSTUS	exon	2834510	2834773	.	+	.	transcript_id "Ledus.S3G036300.t1"; gene_id "Ledus.S3G036300"
Ledus.S3	AUGUSTUS	stop_codon	2834774	2834776	.	+	0	transcript_id "Ledus.S3G036300.t1"; gene_id "Ledus.S3G036300"
# This transcript jg11586.t2 is derived from g5204.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11587.t1 is derived from g5205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5411138	5412250	.	+	.	Ledus.S4G074300
Ledus.S4	AUGUSTUS	transcript	5411138	5412250	.	+	.	transcript_id "Ledus.S4G074300.t1"; gene_id "Ledus.S4G074300"
Ledus.S4	AUGUSTUS	start_codon	5411138	5411140	.	+	0	transcript_id "Ledus.S4G074300.t1"; gene_id "Ledus.S4G074300"
Ledus.S4	AUGUSTUS	CDS	5411138	5412250	1	+	0	transcript_id "Ledus.S4G074300.t1"; gene_id "Ledus.S4G074300"
Ledus.S4	AUGUSTUS	exon	5411138	5412250	.	+	.	transcript_id "Ledus.S4G074300.t1"; gene_id "Ledus.S4G074300"
Ledus.S4	AUGUSTUS	stop_codon	5412251	5412253	.	+	0	transcript_id "Ledus.S4G074300.t1"; gene_id "Ledus.S4G074300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8140.t1 is derived from g12811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9350188	9351641	.	-	.	Ledus.S5G091800
Ledus.S5	AUGUSTUS	transcript	9350188	9351641	.	-	.	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	stop_codon	9350185	9350187	.	-	0	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	CDS	9350188	9350763	0.43	-	0	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	exon	9350188	9350763	.	-	.	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	intron	9350764	9350885	.	-	.	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	CDS	9350886	9351050	1	-	0	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	exon	9350886	9351050	.	-	.	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	intron	9351051	9351194	.	-	.	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	CDS	9351195	9351309	1	-	1	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	exon	9351195	9351309	.	-	.	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	intron	9351310	9351453	.	-	.	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	CDS	9351454	9351641	0.98	-	0	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	exon	9351454	9351641	.	-	.	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
Ledus.S5	AUGUSTUS	start_codon	9351639	9351641	.	-	0	transcript_id "Ledus.S5G091800.t1"; gene_id "Ledus.S5G091800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9786.t1 is derived from g10816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9791865	9792957	.	-	.	Ledus.S3G126300
Ledus.S3	AUGUSTUS	transcript	9791865	9792957	.	-	.	transcript_id "Ledus.S3G126300.t1"; gene_id "Ledus.S3G126300"
Ledus.S3	AUGUSTUS	stop_codon	9791862	9791864	.	-	0	transcript_id "Ledus.S3G126300.t1"; gene_id "Ledus.S3G126300"
Ledus.S3	AUGUSTUS	CDS	9791865	9792061	0.17	-	2	transcript_id "Ledus.S3G126300.t1"; gene_id "Ledus.S3G126300"
Ledus.S3	AUGUSTUS	exon	9791865	9792061	.	-	.	transcript_id "Ledus.S3G126300.t1"; gene_id "Ledus.S3G126300"
Ledus.S3	AUGUSTUS	intron	9792062	9792343	.	-	.	transcript_id "Ledus.S3G126300.t1"; gene_id "Ledus.S3G126300"
Ledus.S3	AUGUSTUS	CDS	9792344	9792406	0.47	-	2	transcript_id "Ledus.S3G126300.t1"; gene_id "Ledus.S3G126300"
Ledus.S3	AUGUSTUS	exon	9792344	9792406	.	-	.	transcript_id "Ledus.S3G126300.t1"; gene_id "Ledus.S3G126300"
Ledus.S3	AUGUSTUS	intron	9792407	9792521	.	-	.	transcript_id "Ledus.S3G126300.t1"; gene_id "Ledus.S3G126300"
Ledus.S3	AUGUSTUS	CDS	9792522	9792957	0.21	-	0	transcript_id "Ledus.S3G126300.t1"; gene_id "Ledus.S3G126300"
Ledus.S3	AUGUSTUS	exon	9792522	9792957	.	-	.	transcript_id "Ledus.S3G126300.t1"; gene_id "Ledus.S3G126300"
Ledus.S3	AUGUSTUS	start_codon	9792955	9792957	.	-	0	transcript_id "Ledus.S3G126300.t1"; gene_id "Ledus.S3G126300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3432.t1 is derived from g867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8330028	8333730	.	+	.	Ledus.S1G085300
Ledus.S1	AUGUSTUS	transcript	8330028	8333730	.	+	.	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	start_codon	8330028	8330030	.	+	0	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	CDS	8330028	8330201	0.44	+	0	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	exon	8330028	8330201	.	+	.	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	intron	8330202	8330273	.	+	.	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	CDS	8330274	8330605	1	+	0	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	exon	8330274	8330605	.	+	.	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	intron	8330606	8330692	.	+	.	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	CDS	8330693	8332019	1	+	1	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	exon	8330693	8332019	.	+	.	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	intron	8332020	8332088	.	+	.	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	CDS	8332089	8332367	1	+	0	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	exon	8332089	8332367	.	+	.	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	intron	8332368	8332452	.	+	.	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	CDS	8332453	8333512	0.99	+	0	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	exon	8332453	8333512	.	+	.	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	intron	8333513	8333704	.	+	.	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	CDS	8333705	8333730	0.99	+	2	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	exon	8333705	8333730	.	+	.	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
Ledus.S1	AUGUSTUS	stop_codon	8333731	8333733	.	+	0	transcript_id "Ledus.S1G085300.t1"; gene_id "Ledus.S1G085300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4870.t1 is derived from g2308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20446493	20448336	.	-	.	Ledus.S1G229100
Ledus.S1	AUGUSTUS	transcript	20446493	20448336	.	-	.	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	stop_codon	20446490	20446492	.	-	0	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	CDS	20446493	20446505	0.99	-	1	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	exon	20446493	20446505	.	-	.	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	intron	20446506	20446582	.	-	.	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	CDS	20446583	20447313	0.66	-	0	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	exon	20446583	20447313	.	-	.	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	intron	20447314	20447425	.	-	.	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	CDS	20447426	20447533	1	-	0	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	exon	20447426	20447533	.	-	.	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	intron	20447534	20447679	.	-	.	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	CDS	20447680	20447891	1	-	2	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	exon	20447680	20447891	.	-	.	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	intron	20447892	20448032	.	-	.	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	CDS	20448033	20448336	0.83	-	0	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	exon	20448033	20448336	.	-	.	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
Ledus.S1	AUGUSTUS	start_codon	20448334	20448336	.	-	0	transcript_id "Ledus.S1G229100.t1"; gene_id "Ledus.S1G229100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9073.t1 is derived from g10103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4367290	4368042	.	+	.	Ledus.S3G055000
Ledus.S3	AUGUSTUS	transcript	4367290	4368042	.	+	.	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	start_codon	4367290	4367292	.	+	0	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	CDS	4367290	4367512	0.63	+	0	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	exon	4367290	4367512	.	+	.	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	intron	4367513	4367598	.	+	.	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	CDS	4367599	4367616	0.63	+	2	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	exon	4367599	4367616	.	+	.	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	intron	4367617	4367706	.	+	.	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	CDS	4367707	4367758	0.99	+	2	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	exon	4367707	4367758	.	+	.	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	intron	4367759	4367802	.	+	.	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	CDS	4367803	4367826	1	+	1	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	exon	4367803	4367826	.	+	.	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	intron	4367827	4368035	.	+	.	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	CDS	4368036	4368042	1	+	1	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	exon	4368036	4368042	.	+	.	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
Ledus.S3	AUGUSTUS	stop_codon	4368043	4368045	.	+	0	transcript_id "Ledus.S3G055000.t1"; gene_id "Ledus.S3G055000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1564.t1 is derived from g8425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10970436	10971422	.	-	.	Ledus.S2G144600
Ledus.S2	AUGUSTUS	transcript	10970436	10971422	.	-	.	transcript_id "Ledus.S2G144600.t1"; gene_id "Ledus.S2G144600"
Ledus.S2	AUGUSTUS	stop_codon	10970433	10970435	.	-	0	transcript_id "Ledus.S2G144600.t1"; gene_id "Ledus.S2G144600"
Ledus.S2	AUGUSTUS	CDS	10970436	10971422	0.97	-	0	transcript_id "Ledus.S2G144600.t1"; gene_id "Ledus.S2G144600"
Ledus.S2	AUGUSTUS	exon	10970436	10971422	.	-	.	transcript_id "Ledus.S2G144600.t1"; gene_id "Ledus.S2G144600"
Ledus.S2	AUGUSTUS	start_codon	10971420	10971422	.	-	0	transcript_id "Ledus.S2G144600.t1"; gene_id "Ledus.S2G144600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1144.t1 is derived from g8005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7911948	7912828	.	+	.	Ledus.S2G102600
Ledus.S2	AUGUSTUS	transcript	7911948	7912828	.	+	.	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	start_codon	7911948	7911950	.	+	0	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	CDS	7911948	7911968	1	+	0	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	exon	7911948	7911968	.	+	.	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	intron	7911969	7912063	.	+	.	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	CDS	7912064	7912189	1	+	0	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	exon	7912064	7912189	.	+	.	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	intron	7912190	7912280	.	+	.	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	CDS	7912281	7912595	1	+	0	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	exon	7912281	7912595	.	+	.	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	intron	7912596	7912669	.	+	.	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	CDS	7912670	7912828	0.78	+	0	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	exon	7912670	7912828	.	+	.	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
Ledus.S2	AUGUSTUS	stop_codon	7912829	7912831	.	+	0	transcript_id "Ledus.S2G102600.t1"; gene_id "Ledus.S2G102600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12337.t1 is derived from g5958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11293946	11296344	.	+	.	Ledus.S4G149300
Ledus.S4	AUGUSTUS	transcript	11293946	11296344	.	+	.	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	start_codon	11293946	11293948	.	+	0	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	CDS	11293946	11294419	0.24	+	0	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	exon	11293946	11294419	.	+	.	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	intron	11294420	11294771	.	+	.	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	CDS	11294772	11295002	1	+	0	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	exon	11294772	11295002	.	+	.	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	intron	11295003	11295300	.	+	.	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	CDS	11295301	11295549	1	+	0	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	exon	11295301	11295549	.	+	.	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	intron	11295550	11295911	.	+	.	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	CDS	11295912	11296007	1	+	0	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	exon	11295912	11296007	.	+	.	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	intron	11296008	11296230	.	+	.	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	CDS	11296231	11296344	0.94	+	0	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	exon	11296231	11296344	.	+	.	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
Ledus.S4	AUGUSTUS	stop_codon	11296345	11296347	.	+	0	transcript_id "Ledus.S4G149300.t1"; gene_id "Ledus.S4G149300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1190.t1 is derived from g8051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8424786	8426933	.	-	.	Ledus.S2G107200
Ledus.S2	AUGUSTUS	transcript	8424786	8426933	.	-	.	transcript_id "Ledus.S2G107200.t1"; gene_id "Ledus.S2G107200"
Ledus.S2	AUGUSTUS	stop_codon	8424783	8424785	.	-	0	transcript_id "Ledus.S2G107200.t1"; gene_id "Ledus.S2G107200"
Ledus.S2	AUGUSTUS	CDS	8424786	8426933	0.84	-	0	transcript_id "Ledus.S2G107200.t1"; gene_id "Ledus.S2G107200"
Ledus.S2	AUGUSTUS	exon	8424786	8426933	.	-	.	transcript_id "Ledus.S2G107200.t1"; gene_id "Ledus.S2G107200"
Ledus.S2	AUGUSTUS	start_codon	8426931	8426933	.	-	0	transcript_id "Ledus.S2G107200.t1"; gene_id "Ledus.S2G107200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2204.t1 is derived from g9067.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15980516	15982312	.	-	.	Ledus.S2G208600
Ledus.S2	AUGUSTUS	transcript	15980516	15982312	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	stop_codon	15980513	15980515	.	-	0	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15980516	15980646	1	-	2	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15980516	15980646	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15980647	15980718	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15980719	15980968	1	-	0	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15980719	15980968	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15980969	15981045	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15981046	15981147	1	-	0	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15981046	15981147	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15981148	15981239	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15981240	15981312	1	-	1	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15981240	15981312	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15981313	15981391	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15981392	15981488	1	-	2	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15981392	15981488	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15981489	15981639	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15981640	15981825	1	-	2	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15981640	15981825	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15981826	15981913	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15981914	15981961	1	-	2	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15981914	15981961	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15981962	15982044	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15982045	15982153	1	-	0	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15982045	15982153	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15982154	15982225	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15982226	15982312	0.99	-	0	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15982226	15982312	.	-	.	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	start_codon	15982310	15982312	.	-	0	transcript_id "Ledus.S2G208600.t1"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	transcript	15980516	15981981	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	stop_codon	15980513	15980515	.	-	0	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15980516	15980646	1	-	2	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15980516	15980646	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15980647	15980718	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15980719	15980968	1	-	0	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15980719	15980968	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15980969	15981045	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15981046	15981147	1	-	0	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15981046	15981147	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15981148	15981239	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15981240	15981312	1	-	1	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15981240	15981312	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15981313	15981391	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15981392	15981488	1	-	2	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15981392	15981488	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15981489	15981639	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15981640	15981821	0.97	-	1	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15981640	15981821	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	intron	15981822	15981913	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	CDS	15981914	15981981	0.54	-	0	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	exon	15981914	15981981	.	-	.	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
Ledus.S2	AUGUSTUS	start_codon	15981979	15981981	.	-	0	transcript_id "Ledus.S2G208600.t2"; gene_id "Ledus.S2G208600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg606.t1 is derived from g7467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3596393	3598993	.	-	.	Ledus.S2G048800
Ledus.S2	AUGUSTUS	transcript	3596393	3598993	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	stop_codon	3596390	3596392	.	-	0	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	CDS	3596393	3596827	0.7	-	0	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	exon	3596393	3596827	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	intron	3596828	3596935	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	CDS	3596936	3597206	0.99	-	1	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	exon	3596936	3597206	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	intron	3597207	3597305	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	CDS	3597306	3597377	1	-	1	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	exon	3597306	3597377	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	intron	3597378	3597499	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	CDS	3597500	3597536	1	-	2	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	exon	3597500	3597536	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	intron	3597537	3597661	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	CDS	3597662	3597720	1	-	1	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	exon	3597662	3597720	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	intron	3597721	3597814	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	CDS	3597815	3598102	1	-	1	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	exon	3597815	3598102	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	intron	3598103	3598208	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	CDS	3598209	3598402	0.84	-	0	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	exon	3598209	3598402	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	intron	3598403	3598552	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	CDS	3598553	3598731	1	-	2	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	exon	3598553	3598731	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	intron	3598732	3598839	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	CDS	3598840	3598993	0.78	-	0	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	exon	3598840	3598993	.	-	.	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
Ledus.S2	AUGUSTUS	start_codon	3598991	3598993	.	-	0	transcript_id "Ledus.S2G048800.t1"; gene_id "Ledus.S2G048800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6031.t1 is derived from g3474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28552490	28552750	.	+	.	Ledus.S1G345200
Ledus.S1	AUGUSTUS	transcript	28552490	28552750	.	+	.	transcript_id "Ledus.S1G345200.t1"; gene_id "Ledus.S1G345200"
Ledus.S1	AUGUSTUS	start_codon	28552490	28552492	.	+	0	transcript_id "Ledus.S1G345200.t1"; gene_id "Ledus.S1G345200"
Ledus.S1	AUGUSTUS	CDS	28552490	28552750	0.46	+	0	transcript_id "Ledus.S1G345200.t1"; gene_id "Ledus.S1G345200"
Ledus.S1	AUGUSTUS	exon	28552490	28552750	.	+	.	transcript_id "Ledus.S1G345200.t1"; gene_id "Ledus.S1G345200"
Ledus.S1	AUGUSTUS	stop_codon	28552751	28552753	.	+	0	transcript_id "Ledus.S1G345200.t1"; gene_id "Ledus.S1G345200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10226.t1 is derived from g11256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13659971	13661683	.	-	.	Ledus.S3G170300
Ledus.S3	AUGUSTUS	transcript	13659971	13661683	.	-	.	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	stop_codon	13659968	13659970	.	-	0	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	CDS	13659971	13660278	0.88	-	2	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	exon	13659971	13660278	.	-	.	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	intron	13660279	13660434	.	-	.	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	CDS	13660435	13660510	1	-	0	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	exon	13660435	13660510	.	-	.	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	intron	13660511	13660691	.	-	.	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	CDS	13660692	13660757	1	-	0	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	exon	13660692	13660757	.	-	.	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	intron	13660758	13660897	.	-	.	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	CDS	13660898	13660999	1	-	0	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	exon	13660898	13660999	.	-	.	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	intron	13661000	13661088	.	-	.	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	CDS	13661089	13661151	1	-	0	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	exon	13661089	13661151	.	-	.	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	intron	13661152	13661242	.	-	.	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	CDS	13661243	13661683	0.97	-	0	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	exon	13661243	13661683	.	-	.	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
Ledus.S3	AUGUSTUS	start_codon	13661681	13661683	.	-	0	transcript_id "Ledus.S3G170300.t1"; gene_id "Ledus.S3G170300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3916.t1 is derived from g1352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13546485	13546901	.	+	.	Ledus.S1G133700
Ledus.S1	AUGUSTUS	transcript	13546485	13546901	.	+	.	transcript_id "Ledus.S1G133700.t1"; gene_id "Ledus.S1G133700"
Ledus.S1	AUGUSTUS	start_codon	13546485	13546487	.	+	0	transcript_id "Ledus.S1G133700.t1"; gene_id "Ledus.S1G133700"
Ledus.S1	AUGUSTUS	CDS	13546485	13546901	0.39	+	0	transcript_id "Ledus.S1G133700.t1"; gene_id "Ledus.S1G133700"
Ledus.S1	AUGUSTUS	exon	13546485	13546901	.	+	.	transcript_id "Ledus.S1G133700.t1"; gene_id "Ledus.S1G133700"
Ledus.S1	AUGUSTUS	stop_codon	13546902	13546904	.	+	0	transcript_id "Ledus.S1G133700.t1"; gene_id "Ledus.S1G133700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4385.t1 is derived from g1821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16747482	16750447	.	+	.	Ledus.S1G180600
Ledus.S1	AUGUSTUS	transcript	16747482	16750447	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	start_codon	16747482	16747484	.	+	0	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	CDS	16747482	16747796	0.85	+	0	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	exon	16747482	16747796	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	intron	16747797	16747885	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	CDS	16747886	16748065	1	+	0	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	exon	16747886	16748065	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	intron	16748066	16748151	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	CDS	16748152	16748280	0.99	+	0	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	exon	16748152	16748280	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	intron	16748281	16748395	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	CDS	16748396	16748446	0.97	+	0	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	exon	16748396	16748446	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	intron	16748447	16748512	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	CDS	16748513	16748572	0.97	+	0	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	exon	16748513	16748572	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	intron	16748573	16748823	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	CDS	16748824	16748930	1	+	0	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	exon	16748824	16748930	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	intron	16748931	16749053	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	CDS	16749054	16749174	1	+	1	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	exon	16749054	16749174	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	intron	16749175	16749264	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	CDS	16749265	16749326	1	+	0	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	exon	16749265	16749326	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	intron	16749327	16749478	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	CDS	16749479	16749781	1	+	1	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	exon	16749479	16749781	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	intron	16749782	16749953	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	CDS	16749954	16750248	1	+	1	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	exon	16749954	16750248	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	intron	16750249	16750330	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	CDS	16750331	16750447	1	+	0	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	exon	16750331	16750447	.	+	.	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
Ledus.S1	AUGUSTUS	stop_codon	16750448	16750450	.	+	0	transcript_id "Ledus.S1G180600.t1"; gene_id "Ledus.S1G180600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5406.t1 is derived from g2845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24015087	24017111	.	-	.	Ledus.S1G282700
Ledus.S1	AUGUSTUS	transcript	24015087	24017111	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	stop_codon	24015084	24015086	.	-	0	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	CDS	24015087	24015591	0.96	-	1	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	exon	24015087	24015591	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	intron	24015592	24015675	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	CDS	24015676	24015802	1	-	2	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	exon	24015676	24015802	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	intron	24015803	24015897	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	CDS	24015898	24016009	1	-	0	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	exon	24015898	24016009	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	intron	24016010	24016096	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	CDS	24016097	24016246	1	-	0	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	exon	24016097	24016246	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	intron	24016247	24016313	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	CDS	24016314	24016365	1	-	1	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	exon	24016314	24016365	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	intron	24016366	24016464	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	CDS	24016465	24016612	1	-	2	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	exon	24016465	24016612	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	intron	24016613	24016711	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	CDS	24016712	24016820	1	-	0	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	exon	24016712	24016820	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	intron	24016821	24016944	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	CDS	24016945	24017002	1	-	1	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	exon	24016945	24017002	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	intron	24017003	24017082	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	CDS	24017083	24017111	0.62	-	0	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	exon	24017083	24017111	.	-	.	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
Ledus.S1	AUGUSTUS	start_codon	24017109	24017111	.	-	0	transcript_id "Ledus.S1G282700.t1"; gene_id "Ledus.S1G282700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3981.t1 is derived from g1417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13904892	13906876	.	+	.	Ledus.S1G140200
Ledus.S1	AUGUSTUS	transcript	13904892	13906876	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	start_codon	13904892	13904894	.	+	0	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	CDS	13904892	13905137	1	+	0	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	exon	13904892	13905137	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	intron	13905138	13905224	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	CDS	13905225	13905856	1	+	0	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	exon	13905225	13905856	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	intron	13905857	13905930	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	CDS	13905931	13905987	1	+	1	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	exon	13905931	13905987	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	intron	13905988	13906068	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	CDS	13906069	13906307	1	+	1	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	exon	13906069	13906307	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	intron	13906308	13906384	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	CDS	13906385	13906503	1	+	2	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	exon	13906385	13906503	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	intron	13906504	13906607	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	CDS	13906608	13906694	0.87	+	0	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	exon	13906608	13906694	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	intron	13906695	13906768	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	CDS	13906769	13906876	0.99	+	0	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	exon	13906769	13906876	.	+	.	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
Ledus.S1	AUGUSTUS	stop_codon	13906877	13906879	.	+	0	transcript_id "Ledus.S1G140200.t1"; gene_id "Ledus.S1G140200"
# This transcript jg12780.t2 is derived from g6402.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12781.t1 is derived from g6403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14450519	14451147	.	-	.	Ledus.S4G193700
Ledus.S4	AUGUSTUS	transcript	14450519	14451147	.	-	.	transcript_id "Ledus.S4G193700.t1"; gene_id "Ledus.S4G193700"
Ledus.S4	AUGUSTUS	stop_codon	14450516	14450518	.	-	0	transcript_id "Ledus.S4G193700.t1"; gene_id "Ledus.S4G193700"
Ledus.S4	AUGUSTUS	CDS	14450519	14450949	1	-	2	transcript_id "Ledus.S4G193700.t1"; gene_id "Ledus.S4G193700"
Ledus.S4	AUGUSTUS	exon	14450519	14450949	.	-	.	transcript_id "Ledus.S4G193700.t1"; gene_id "Ledus.S4G193700"
Ledus.S4	AUGUSTUS	intron	14450950	14451023	.	-	.	transcript_id "Ledus.S4G193700.t1"; gene_id "Ledus.S4G193700"
Ledus.S4	AUGUSTUS	CDS	14451024	14451147	1	-	0	transcript_id "Ledus.S4G193700.t1"; gene_id "Ledus.S4G193700"
Ledus.S4	AUGUSTUS	exon	14451024	14451147	.	-	.	transcript_id "Ledus.S4G193700.t1"; gene_id "Ledus.S4G193700"
Ledus.S4	AUGUSTUS	start_codon	14451145	14451147	.	-	0	transcript_id "Ledus.S4G193700.t1"; gene_id "Ledus.S4G193700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3336.t1 is derived from g771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7552324	7554972	.	+	.	Ledus.S1G075700
Ledus.S1	AUGUSTUS	transcript	7552324	7554972	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	start_codon	7552324	7552326	.	+	0	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	CDS	7552324	7552732	0.33	+	0	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	exon	7552324	7552732	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	intron	7552733	7552841	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	CDS	7552842	7553033	0.99	+	2	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	exon	7552842	7553033	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	intron	7553034	7553116	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	CDS	7553117	7553382	0.99	+	2	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	exon	7553117	7553382	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	intron	7553383	7553483	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	CDS	7553484	7553616	1	+	0	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	exon	7553484	7553616	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	intron	7553617	7553724	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	CDS	7553725	7553785	1	+	2	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	exon	7553725	7553785	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	intron	7553786	7553868	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	CDS	7553869	7553965	1	+	1	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	exon	7553869	7553965	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	intron	7553966	7554054	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	CDS	7554055	7554163	1	+	0	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	exon	7554055	7554163	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	intron	7554164	7554391	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	CDS	7554392	7554510	0.98	+	2	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	exon	7554392	7554510	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	intron	7554511	7554618	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	CDS	7554619	7554708	1	+	0	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	exon	7554619	7554708	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	intron	7554709	7554789	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	CDS	7554790	7554972	1	+	0	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	exon	7554790	7554972	.	+	.	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
Ledus.S1	AUGUSTUS	stop_codon	7554973	7554975	.	+	0	transcript_id "Ledus.S1G075700.t1"; gene_id "Ledus.S1G075700"
# This transcript jg1192.t2 is derived from g8053.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1193.t1 is derived from g8054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8452418	8456805	.	-	.	Ledus.S2G107500
Ledus.S2	AUGUSTUS	transcript	8452418	8456805	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	stop_codon	8452415	8452417	.	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8452418	8452552	0.91	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8452418	8452552	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8452553	8452650	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8452651	8452798	0.92	-	1	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8452651	8452798	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8452799	8452914	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8452915	8453058	0.99	-	1	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8452915	8453058	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8453059	8453140	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8453141	8453295	1	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8453141	8453295	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8453296	8453369	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8453370	8453507	0.85	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8453370	8453507	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8453508	8453618	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8453619	8453789	1	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8453619	8453789	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8453790	8453881	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8453882	8454076	1	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8453882	8454076	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8454077	8454169	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8454170	8454291	1	-	2	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8454170	8454291	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8454292	8454439	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8454440	8454575	1	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8454440	8454575	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8454576	8454738	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8454739	8454834	1	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8454739	8454834	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8454835	8454934	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8454935	8455082	1	-	1	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8454935	8455082	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8455083	8455232	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8455233	8455408	1	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8455233	8455408	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8455409	8455504	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8455505	8455714	1	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8455505	8455714	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8455715	8455963	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8455964	8456122	1	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8455964	8456122	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8456123	8456209	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8456210	8456306	1	-	1	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8456210	8456306	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8456307	8456418	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8456419	8456515	0.91	-	2	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8456419	8456515	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8456516	8456699	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8456700	8456805	1	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8456700	8456805	.	-	.	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	start_codon	8456803	8456805	.	-	0	transcript_id "Ledus.S2G107500.t1"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	transcript	8452418	8456805	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	stop_codon	8452415	8452417	.	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8452418	8452552	0.91	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8452418	8452552	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8452553	8452650	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8452651	8452798	0.94	-	1	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8452651	8452798	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8452799	8452914	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8452915	8453058	0.99	-	1	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8452915	8453058	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8453059	8453140	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8453141	8453295	1	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8453141	8453295	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8453296	8453369	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8453370	8453507	0.79	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8453370	8453507	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8453508	8453618	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8453619	8453789	1	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8453619	8453789	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8453790	8453881	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8453882	8454076	1	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8453882	8454076	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8454077	8454169	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8454170	8454291	1	-	2	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8454170	8454291	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8454292	8454439	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8454440	8454575	1	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8454440	8454575	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8454576	8454738	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8454739	8454834	1	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8454739	8454834	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8454835	8454934	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8454935	8455082	1	-	1	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8454935	8455082	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8455083	8455232	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8455233	8455408	1	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8455233	8455408	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8455409	8455504	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8455505	8455605	0.81	-	2	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8455505	8455605	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8455606	8455714	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8455715	8455721	0.95	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8455715	8455721	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8455722	8455963	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8455964	8456122	0.96	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8455964	8456122	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8456123	8456209	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8456210	8456306	1	-	1	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8456210	8456306	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8456307	8456418	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8456419	8456515	0.9	-	2	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8456419	8456515	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	intron	8456516	8456699	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	CDS	8456700	8456805	1	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	exon	8456700	8456805	.	-	.	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
Ledus.S2	AUGUSTUS	start_codon	8456803	8456805	.	-	0	transcript_id "Ledus.S2G107500.t2"; gene_id "Ledus.S2G107500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1149.t1 is derived from g8010.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7941369	7942667	.	-	.	Ledus.S2G103100
Ledus.S2	AUGUSTUS	transcript	7941369	7942667	.	-	.	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	stop_codon	7941366	7941368	.	-	0	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	CDS	7941369	7941686	1	-	0	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	exon	7941369	7941686	.	-	.	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	intron	7941687	7941773	.	-	.	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	CDS	7941774	7941889	1	-	2	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	exon	7941774	7941889	.	-	.	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	intron	7941890	7941989	.	-	.	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	CDS	7941990	7942434	0.43	-	0	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	exon	7941990	7942434	.	-	.	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	intron	7942435	7942517	.	-	.	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	CDS	7942518	7942667	0.61	-	0	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	exon	7942518	7942667	.	-	.	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
Ledus.S2	AUGUSTUS	start_codon	7942665	7942667	.	-	0	transcript_id "Ledus.S2G103100.t1"; gene_id "Ledus.S2G103100"
# This transcript jg4666.t2 is derived from g2104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4667.t1 is derived from g2105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18904583	18907064	.	-	.	Ledus.S1G208800
Ledus.S1	AUGUSTUS	transcript	18904583	18907064	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	stop_codon	18904580	18904582	.	-	0	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	CDS	18904583	18904678	1	-	0	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	exon	18904583	18904678	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	intron	18904679	18904779	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	CDS	18904780	18904938	0.92	-	0	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	exon	18904780	18904938	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	intron	18904939	18905028	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	CDS	18905029	18905115	1	-	0	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	exon	18905029	18905115	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	intron	18905116	18905210	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	CDS	18905211	18905433	0.5	-	1	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	exon	18905211	18905433	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	intron	18905434	18905618	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	CDS	18905619	18906073	0.94	-	0	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	exon	18905619	18906073	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	intron	18906074	18906164	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	CDS	18906165	18906242	1	-	0	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	exon	18906165	18906242	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	intron	18906243	18906327	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	CDS	18906328	18906462	1	-	0	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	exon	18906328	18906462	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	intron	18906463	18906647	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	CDS	18906648	18906805	0.71	-	2	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	exon	18906648	18906805	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	intron	18906806	18906883	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	CDS	18906884	18907064	1	-	0	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	exon	18906884	18907064	.	-	.	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
Ledus.S1	AUGUSTUS	start_codon	18907062	18907064	.	-	0	transcript_id "Ledus.S1G208800.t1"; gene_id "Ledus.S1G208800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6358.t1 is derived from g3801.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30733351	30734284	.	-	.	Ledus.S1G377900
Ledus.S1	AUGUSTUS	transcript	30733351	30734284	.	-	.	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	stop_codon	30733348	30733350	.	-	0	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	CDS	30733351	30733572	0.96	-	0	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	exon	30733351	30733572	.	-	.	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	intron	30733573	30733735	.	-	.	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	CDS	30733736	30733808	1	-	1	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	exon	30733736	30733808	.	-	.	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	intron	30733809	30733896	.	-	.	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	CDS	30733897	30733971	0.23	-	1	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	exon	30733897	30733971	.	-	.	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	intron	30733972	30734024	.	-	.	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	CDS	30734025	30734030	0.23	-	1	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	exon	30734025	30734030	.	-	.	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	intron	30734031	30734177	.	-	.	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	CDS	30734178	30734284	0.5	-	0	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	exon	30734178	30734284	.	-	.	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	start_codon	30734282	30734284	.	-	0	transcript_id "Ledus.S1G377900.t1"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	transcript	30733351	30734284	.	-	.	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	stop_codon	30733348	30733350	.	-	0	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	CDS	30733351	30733572	0.98	-	0	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	exon	30733351	30733572	.	-	.	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	intron	30733573	30733735	.	-	.	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	CDS	30733736	30733798	0.75	-	0	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	exon	30733736	30733798	.	-	.	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	intron	30733799	30733896	.	-	.	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	CDS	30733897	30733919	0.38	-	2	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	exon	30733897	30733919	.	-	.	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	intron	30733920	30734022	.	-	.	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	CDS	30734023	30734030	0.3	-	1	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	exon	30734023	30734030	.	-	.	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	intron	30734031	30734177	.	-	.	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	CDS	30734178	30734284	0.53	-	0	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	exon	30734178	30734284	.	-	.	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
Ledus.S1	AUGUSTUS	start_codon	30734282	30734284	.	-	0	transcript_id "Ledus.S1G377900.t2"; gene_id "Ledus.S1G377900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3724.t1 is derived from g1160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11192974	11194411	.	+	.	Ledus.S1G114500
Ledus.S1	AUGUSTUS	transcript	11192974	11194411	.	+	.	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	start_codon	11192974	11192976	.	+	0	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	CDS	11192974	11193163	0.67	+	0	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	exon	11192974	11193163	.	+	.	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	intron	11193164	11193243	.	+	.	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	CDS	11193244	11193428	1	+	2	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	exon	11193244	11193428	.	+	.	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	intron	11193429	11193532	.	+	.	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	CDS	11193533	11193733	1	+	0	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	exon	11193533	11193733	.	+	.	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	intron	11193734	11193824	.	+	.	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	CDS	11193825	11193986	1	+	0	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	exon	11193825	11193986	.	+	.	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	intron	11193987	11194072	.	+	.	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	CDS	11194073	11194411	1	+	0	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	exon	11194073	11194411	.	+	.	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
Ledus.S1	AUGUSTUS	stop_codon	11194412	11194414	.	+	0	transcript_id "Ledus.S1G114500.t1"; gene_id "Ledus.S1G114500"
# This transcript jg7203.t2 is derived from g6734.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7203.t3 is derived from g6734.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7204.t1 is derived from g6735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2130350	2131026	.	+	.	Ledus.C7G026500
Ledus.C7	AUGUSTUS	transcript	2130350	2131026	.	+	.	transcript_id "Ledus.C7G026500.t1"; gene_id "Ledus.C7G026500"
Ledus.C7	AUGUSTUS	start_codon	2130350	2130352	.	+	0	transcript_id "Ledus.C7G026500.t1"; gene_id "Ledus.C7G026500"
Ledus.C7	AUGUSTUS	CDS	2130350	2130691	0.28	+	0	transcript_id "Ledus.C7G026500.t1"; gene_id "Ledus.C7G026500"
Ledus.C7	AUGUSTUS	exon	2130350	2130691	.	+	.	transcript_id "Ledus.C7G026500.t1"; gene_id "Ledus.C7G026500"
Ledus.C7	AUGUSTUS	intron	2130692	2130891	.	+	.	transcript_id "Ledus.C7G026500.t1"; gene_id "Ledus.C7G026500"
Ledus.C7	AUGUSTUS	CDS	2130892	2131026	0.88	+	0	transcript_id "Ledus.C7G026500.t1"; gene_id "Ledus.C7G026500"
Ledus.C7	AUGUSTUS	exon	2130892	2131026	.	+	.	transcript_id "Ledus.C7G026500.t1"; gene_id "Ledus.C7G026500"
Ledus.C7	AUGUSTUS	stop_codon	2131027	2131029	.	+	0	transcript_id "Ledus.C7G026500.t1"; gene_id "Ledus.C7G026500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg191.t1 is derived from g7052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	699648	701228	.	-	.	Ledus.S2G007300
Ledus.S2	AUGUSTUS	transcript	699648	701228	.	-	.	transcript_id "Ledus.S2G007300.t1"; gene_id "Ledus.S2G007300"
Ledus.S2	AUGUSTUS	stop_codon	699645	699647	.	-	0	transcript_id "Ledus.S2G007300.t1"; gene_id "Ledus.S2G007300"
Ledus.S2	AUGUSTUS	CDS	699648	701228	0.89	-	0	transcript_id "Ledus.S2G007300.t1"; gene_id "Ledus.S2G007300"
Ledus.S2	AUGUSTUS	exon	699648	701228	.	-	.	transcript_id "Ledus.S2G007300.t1"; gene_id "Ledus.S2G007300"
Ledus.S2	AUGUSTUS	start_codon	701226	701228	.	-	0	transcript_id "Ledus.S2G007300.t1"; gene_id "Ledus.S2G007300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg482.t1 is derived from g7343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2835544	2836624	.	-	.	Ledus.S2G036400
Ledus.S2	AUGUSTUS	transcript	2835544	2836624	.	-	.	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	stop_codon	2835541	2835543	.	-	0	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	CDS	2835544	2835734	0.98	-	2	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	exon	2835544	2835734	.	-	.	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	intron	2835735	2835820	.	-	.	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	CDS	2835821	2835898	0.94	-	2	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	exon	2835821	2835898	.	-	.	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	intron	2835899	2836010	.	-	.	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	CDS	2836011	2836068	0.99	-	0	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	exon	2836011	2836068	.	-	.	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	intron	2836069	2836189	.	-	.	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	CDS	2836190	2836311	1	-	2	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	exon	2836190	2836311	.	-	.	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	intron	2836312	2836473	.	-	.	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	CDS	2836474	2836624	0.86	-	0	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	exon	2836474	2836624	.	-	.	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
Ledus.S2	AUGUSTUS	start_codon	2836622	2836624	.	-	0	transcript_id "Ledus.S2G036400.t1"; gene_id "Ledus.S2G036400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg773.t1 is derived from g7634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4903888	4905716	.	+	.	Ledus.S2G065500
Ledus.S2	AUGUSTUS	transcript	4903888	4905716	.	+	.	transcript_id "Ledus.S2G065500.t1"; gene_id "Ledus.S2G065500"
Ledus.S2	AUGUSTUS	start_codon	4903888	4903890	.	+	0	transcript_id "Ledus.S2G065500.t1"; gene_id "Ledus.S2G065500"
Ledus.S2	AUGUSTUS	CDS	4903888	4904151	1	+	0	transcript_id "Ledus.S2G065500.t1"; gene_id "Ledus.S2G065500"
Ledus.S2	AUGUSTUS	exon	4903888	4904151	.	+	.	transcript_id "Ledus.S2G065500.t1"; gene_id "Ledus.S2G065500"
Ledus.S2	AUGUSTUS	intron	4904152	4904329	.	+	.	transcript_id "Ledus.S2G065500.t1"; gene_id "Ledus.S2G065500"
Ledus.S2	AUGUSTUS	CDS	4904330	4904791	1	+	0	transcript_id "Ledus.S2G065500.t1"; gene_id "Ledus.S2G065500"
Ledus.S2	AUGUSTUS	exon	4904330	4904791	.	+	.	transcript_id "Ledus.S2G065500.t1"; gene_id "Ledus.S2G065500"
Ledus.S2	AUGUSTUS	intron	4904792	4904909	.	+	.	transcript_id "Ledus.S2G065500.t1"; gene_id "Ledus.S2G065500"
Ledus.S2	AUGUSTUS	CDS	4904910	4905716	1	+	0	transcript_id "Ledus.S2G065500.t1"; gene_id "Ledus.S2G065500"
Ledus.S2	AUGUSTUS	exon	4904910	4905716	.	+	.	transcript_id "Ledus.S2G065500.t1"; gene_id "Ledus.S2G065500"
Ledus.S2	AUGUSTUS	stop_codon	4905717	4905719	.	+	0	transcript_id "Ledus.S2G065500.t1"; gene_id "Ledus.S2G065500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4006.t1 is derived from g1442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14045663	14046748	.	-	.	Ledus.S1G142700
Ledus.S1	AUGUSTUS	transcript	14045663	14046748	.	-	.	transcript_id "Ledus.S1G142700.t1"; gene_id "Ledus.S1G142700"
Ledus.S1	AUGUSTUS	stop_codon	14045660	14045662	.	-	0	transcript_id "Ledus.S1G142700.t1"; gene_id "Ledus.S1G142700"
Ledus.S1	AUGUSTUS	CDS	14045663	14046748	0.78	-	0	transcript_id "Ledus.S1G142700.t1"; gene_id "Ledus.S1G142700"
Ledus.S1	AUGUSTUS	exon	14045663	14046748	.	-	.	transcript_id "Ledus.S1G142700.t1"; gene_id "Ledus.S1G142700"
Ledus.S1	AUGUSTUS	start_codon	14046746	14046748	.	-	0	transcript_id "Ledus.S1G142700.t1"; gene_id "Ledus.S1G142700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7987.t1 is derived from g12658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8358746	8359204	.	-	.	Ledus.S5G076500
Ledus.S5	AUGUSTUS	transcript	8358746	8359204	.	-	.	transcript_id "Ledus.S5G076500.t1"; gene_id "Ledus.S5G076500"
Ledus.S5	AUGUSTUS	stop_codon	8358743	8358745	.	-	0	transcript_id "Ledus.S5G076500.t1"; gene_id "Ledus.S5G076500"
Ledus.S5	AUGUSTUS	CDS	8358746	8358881	0.47	-	1	transcript_id "Ledus.S5G076500.t1"; gene_id "Ledus.S5G076500"
Ledus.S5	AUGUSTUS	exon	8358746	8358881	.	-	.	transcript_id "Ledus.S5G076500.t1"; gene_id "Ledus.S5G076500"
Ledus.S5	AUGUSTUS	intron	8358882	8358959	.	-	.	transcript_id "Ledus.S5G076500.t1"; gene_id "Ledus.S5G076500"
Ledus.S5	AUGUSTUS	CDS	8358960	8359204	0.29	-	0	transcript_id "Ledus.S5G076500.t1"; gene_id "Ledus.S5G076500"
Ledus.S5	AUGUSTUS	exon	8358960	8359204	.	-	.	transcript_id "Ledus.S5G076500.t1"; gene_id "Ledus.S5G076500"
Ledus.S5	AUGUSTUS	start_codon	8359202	8359204	.	-	0	transcript_id "Ledus.S5G076500.t1"; gene_id "Ledus.S5G076500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg892.t1 is derived from g7753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5991558	5996292	.	+	.	Ledus.S2G077400
Ledus.S2	AUGUSTUS	transcript	5991558	5996292	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	start_codon	5991558	5991560	.	+	0	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5991558	5991590	1	+	0	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5991558	5991590	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5991591	5991831	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5991832	5991992	1	+	0	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5991832	5991992	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5991993	5992073	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5992074	5992134	1	+	1	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5992074	5992134	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5992135	5992223	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5992224	5993760	0.99	+	0	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5992224	5993760	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5993761	5993902	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5993903	5993934	1	+	2	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5993903	5993934	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5993935	5994078	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5994079	5994226	0.6	+	0	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5994079	5994226	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5994227	5994320	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5994321	5994418	0.99	+	2	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5994321	5994418	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5994419	5994588	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5994589	5994633	1	+	0	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5994589	5994633	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5994634	5994721	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5994722	5994827	1	+	0	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5994722	5994827	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5994828	5994909	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5994910	5995036	0.95	+	2	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5994910	5995036	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5995037	5995139	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5995140	5995255	1	+	1	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5995140	5995255	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5995256	5995347	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5995348	5995424	1	+	2	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5995348	5995424	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5995425	5995614	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5995615	5995749	0.99	+	0	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5995615	5995749	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5995750	5995858	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5995859	5995927	0.98	+	0	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5995859	5995927	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	intron	5995928	5996022	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	CDS	5996023	5996292	1	+	0	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	exon	5996023	5996292	.	+	.	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
Ledus.S2	AUGUSTUS	stop_codon	5996293	5996295	.	+	0	transcript_id "Ledus.S2G077400.t1"; gene_id "Ledus.S2G077400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3398.t1 is derived from g833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8084217	8085335	.	+	.	Ledus.S1G081900
Ledus.S1	AUGUSTUS	transcript	8084217	8085335	.	+	.	transcript_id "Ledus.S1G081900.t1"; gene_id "Ledus.S1G081900"
Ledus.S1	AUGUSTUS	start_codon	8084217	8084219	.	+	0	transcript_id "Ledus.S1G081900.t1"; gene_id "Ledus.S1G081900"
Ledus.S1	AUGUSTUS	CDS	8084217	8085335	0.93	+	0	transcript_id "Ledus.S1G081900.t1"; gene_id "Ledus.S1G081900"
Ledus.S1	AUGUSTUS	exon	8084217	8085335	.	+	.	transcript_id "Ledus.S1G081900.t1"; gene_id "Ledus.S1G081900"
Ledus.S1	AUGUSTUS	stop_codon	8085336	8085338	.	+	0	transcript_id "Ledus.S1G081900.t1"; gene_id "Ledus.S1G081900"
# This transcript jg8088.t2 is derived from g12759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8089.t1 is derived from g12760.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9106341	9107366	.	-	.	Ledus.S5G086700
Ledus.S5	AUGUSTUS	transcript	9106341	9107366	.	-	.	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	stop_codon	9106338	9106340	.	-	0	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	CDS	9106341	9106432	1	-	2	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	exon	9106341	9106432	.	-	.	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	intron	9106433	9106545	.	-	.	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	CDS	9106546	9106643	1	-	1	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	exon	9106546	9106643	.	-	.	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	intron	9106644	9106788	.	-	.	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	CDS	9106789	9106895	1	-	0	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	exon	9106789	9106895	.	-	.	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	intron	9106896	9107264	.	-	.	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	CDS	9107265	9107366	0.9	-	0	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	exon	9107265	9107366	.	-	.	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	start_codon	9107364	9107366	.	-	0	transcript_id "Ledus.S5G086700.t1"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	transcript	9106341	9107366	.	-	.	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	stop_codon	9106338	9106340	.	-	0	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	CDS	9106341	9106432	1	-	2	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	exon	9106341	9106432	.	-	.	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	intron	9106433	9106545	.	-	.	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	CDS	9106546	9106643	0.99	-	1	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	exon	9106546	9106643	.	-	.	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	intron	9106644	9106788	.	-	.	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	CDS	9106789	9106910	1	-	0	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	exon	9106789	9106910	.	-	.	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	intron	9106911	9107264	.	-	.	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	CDS	9107265	9107366	0.91	-	0	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	exon	9107265	9107366	.	-	.	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
Ledus.S5	AUGUSTUS	start_codon	9107364	9107366	.	-	0	transcript_id "Ledus.S5G086700.t2"; gene_id "Ledus.S5G086700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5067.t1 is derived from g2506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21430321	21432266	.	-	.	Ledus.S1G248800
Ledus.S1	AUGUSTUS	transcript	21430321	21432266	.	-	.	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	stop_codon	21430318	21430320	.	-	0	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	CDS	21430321	21430439	0.32	-	2	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	exon	21430321	21430439	.	-	.	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	intron	21430440	21430685	.	-	.	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	CDS	21430686	21430907	1	-	2	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	exon	21430686	21430907	.	-	.	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	intron	21430908	21431398	.	-	.	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	CDS	21431399	21431633	1	-	0	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	exon	21431399	21431633	.	-	.	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	intron	21431634	21431729	.	-	.	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	CDS	21431730	21431856	0.82	-	1	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	exon	21431730	21431856	.	-	.	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	intron	21431857	21431956	.	-	.	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	CDS	21431957	21432030	0.98	-	0	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	exon	21431957	21432030	.	-	.	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	intron	21432031	21432227	.	-	.	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	CDS	21432228	21432266	0.86	-	0	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	exon	21432228	21432266	.	-	.	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
Ledus.S1	AUGUSTUS	start_codon	21432264	21432266	.	-	0	transcript_id "Ledus.S1G248800.t1"; gene_id "Ledus.S1G248800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3116.t1 is derived from g551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6125014	6127616	.	+	.	Ledus.S1G053700
Ledus.S1	AUGUSTUS	transcript	6125014	6127616	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	start_codon	6125014	6125016	.	+	0	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6125014	6125095	0.6	+	0	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6125014	6125095	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	intron	6125096	6125186	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6125187	6125242	1	+	2	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6125187	6125242	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	intron	6125243	6125388	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6125389	6125520	1	+	0	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6125389	6125520	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	intron	6125521	6125632	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6125633	6125716	1	+	0	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6125633	6125716	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	intron	6125717	6125889	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6125890	6126005	1	+	0	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6125890	6126005	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	intron	6126006	6126109	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6126110	6126211	1	+	1	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6126110	6126211	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	intron	6126212	6126369	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6126370	6126483	1	+	1	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6126370	6126483	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	intron	6126484	6126593	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6126594	6126650	1	+	1	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6126594	6126650	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	intron	6126651	6126803	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6126804	6126870	1	+	1	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6126804	6126870	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	intron	6126871	6127028	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6127029	6127082	1	+	0	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6127029	6127082	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	intron	6127083	6127199	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6127200	6127274	1	+	0	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6127200	6127274	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	intron	6127275	6127395	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6127396	6127431	1	+	0	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6127396	6127431	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	intron	6127432	6127508	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	CDS	6127509	6127616	0.97	+	0	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	exon	6127509	6127616	.	+	.	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
Ledus.S1	AUGUSTUS	stop_codon	6127617	6127619	.	+	0	transcript_id "Ledus.S1G053700.t1"; gene_id "Ledus.S1G053700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6389.t1 is derived from g3832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30970957	30972135	.	-	.	Ledus.S1G381000
Ledus.S1	AUGUSTUS	transcript	30970957	30972135	.	-	.	transcript_id "Ledus.S1G381000.t1"; gene_id "Ledus.S1G381000"
Ledus.S1	AUGUSTUS	stop_codon	30970954	30970956	.	-	0	transcript_id "Ledus.S1G381000.t1"; gene_id "Ledus.S1G381000"
Ledus.S1	AUGUSTUS	CDS	30970957	30972135	0.91	-	0	transcript_id "Ledus.S1G381000.t1"; gene_id "Ledus.S1G381000"
Ledus.S1	AUGUSTUS	exon	30970957	30972135	.	-	.	transcript_id "Ledus.S1G381000.t1"; gene_id "Ledus.S1G381000"
Ledus.S1	AUGUSTUS	start_codon	30972133	30972135	.	-	0	transcript_id "Ledus.S1G381000.t1"; gene_id "Ledus.S1G381000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2833.t1 is derived from g267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4013115	4014665	.	+	.	Ledus.S1G025400
Ledus.S1	AUGUSTUS	transcript	4013115	4014665	.	+	.	transcript_id "Ledus.S1G025400.t1"; gene_id "Ledus.S1G025400"
Ledus.S1	AUGUSTUS	start_codon	4013115	4013117	.	+	0	transcript_id "Ledus.S1G025400.t1"; gene_id "Ledus.S1G025400"
Ledus.S1	AUGUSTUS	CDS	4013115	4014665	0.97	+	0	transcript_id "Ledus.S1G025400.t1"; gene_id "Ledus.S1G025400"
Ledus.S1	AUGUSTUS	exon	4013115	4014665	.	+	.	transcript_id "Ledus.S1G025400.t1"; gene_id "Ledus.S1G025400"
Ledus.S1	AUGUSTUS	stop_codon	4014666	4014668	.	+	0	transcript_id "Ledus.S1G025400.t1"; gene_id "Ledus.S1G025400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11660.t1 is derived from g5279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5800665	5801355	.	-	.	Ledus.S4G081600
Ledus.S4	AUGUSTUS	transcript	5800665	5801355	.	-	.	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	stop_codon	5800662	5800664	.	-	0	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	CDS	5800665	5800707	1	-	1	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	exon	5800665	5800707	.	-	.	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	intron	5800708	5800787	.	-	.	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	CDS	5800788	5800846	1	-	0	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	exon	5800788	5800846	.	-	.	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	intron	5800847	5800942	.	-	.	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	CDS	5800943	5801048	0.95	-	1	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	exon	5800943	5801048	.	-	.	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	intron	5801049	5801151	.	-	.	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	CDS	5801152	5801201	0.98	-	0	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	exon	5801152	5801201	.	-	.	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	intron	5801202	5801277	.	-	.	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	CDS	5801278	5801355	1	-	0	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	exon	5801278	5801355	.	-	.	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
Ledus.S4	AUGUSTUS	start_codon	5801353	5801355	.	-	0	transcript_id "Ledus.S4G081600.t1"; gene_id "Ledus.S4G081600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg319.t1 is derived from g7180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1616504	1617160	.	+	.	Ledus.S2G020100
Ledus.S2	AUGUSTUS	transcript	1616504	1617160	.	+	.	transcript_id "Ledus.S2G020100.t1"; gene_id "Ledus.S2G020100"
Ledus.S2	AUGUSTUS	start_codon	1616504	1616506	.	+	0	transcript_id "Ledus.S2G020100.t1"; gene_id "Ledus.S2G020100"
Ledus.S2	AUGUSTUS	CDS	1616504	1617160	0.95	+	0	transcript_id "Ledus.S2G020100.t1"; gene_id "Ledus.S2G020100"
Ledus.S2	AUGUSTUS	exon	1616504	1617160	.	+	.	transcript_id "Ledus.S2G020100.t1"; gene_id "Ledus.S2G020100"
Ledus.S2	AUGUSTUS	stop_codon	1617161	1617163	.	+	0	transcript_id "Ledus.S2G020100.t1"; gene_id "Ledus.S2G020100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6725.t1 is derived from g4168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33539911	33542092	.	-	.	Ledus.S1G414600
Ledus.S1	AUGUSTUS	transcript	33539911	33542092	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	stop_codon	33539908	33539910	.	-	0	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	CDS	33539911	33540059	1	-	2	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	exon	33539911	33540059	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	intron	33540060	33540141	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	CDS	33540142	33540212	0.96	-	1	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	exon	33540142	33540212	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	intron	33540213	33540315	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	CDS	33540316	33540432	0.74	-	1	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	exon	33540316	33540432	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	intron	33540433	33540540	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	CDS	33540541	33540664	0.91	-	2	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	exon	33540541	33540664	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	intron	33540665	33540782	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	CDS	33540783	33540855	1	-	0	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	exon	33540783	33540855	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	intron	33540856	33541088	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	CDS	33541089	33541182	1	-	1	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	exon	33541089	33541182	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	intron	33541183	33541263	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	CDS	33541264	33541355	1	-	0	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	exon	33541264	33541355	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	intron	33541356	33541437	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	CDS	33541438	33541582	1	-	1	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	exon	33541438	33541582	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	intron	33541583	33541680	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	CDS	33541681	33541775	1	-	0	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	exon	33541681	33541775	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	intron	33541776	33541894	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	CDS	33541895	33542092	1	-	0	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	exon	33541895	33542092	.	-	.	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
Ledus.S1	AUGUSTUS	start_codon	33542090	33542092	.	-	0	transcript_id "Ledus.S1G414600.t1"; gene_id "Ledus.S1G414600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5772.t1 is derived from g3213.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26683974	26686071	.	-	.	Ledus.S1G319300
Ledus.S1	AUGUSTUS	transcript	26683974	26686071	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	stop_codon	26683971	26683973	.	-	0	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	CDS	26683974	26684147	0.99	-	0	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	exon	26683974	26684147	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	intron	26684148	26684237	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	CDS	26684238	26684354	1	-	0	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	exon	26684238	26684354	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	intron	26684355	26684446	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	CDS	26684447	26684572	1	-	0	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	exon	26684447	26684572	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	intron	26684573	26684667	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	CDS	26684668	26684763	0.98	-	0	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	exon	26684668	26684763	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	intron	26684764	26684883	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	CDS	26684884	26685024	0.98	-	0	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	exon	26684884	26685024	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	intron	26685025	26685192	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	CDS	26685193	26685303	1	-	0	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	exon	26685193	26685303	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	intron	26685304	26685633	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	CDS	26685634	26686071	0.89	-	0	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	exon	26685634	26686071	.	-	.	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
Ledus.S1	AUGUSTUS	start_codon	26686069	26686071	.	-	0	transcript_id "Ledus.S1G319300.t1"; gene_id "Ledus.S1G319300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg760.t1 is derived from g7621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4855984	4856779	.	-	.	Ledus.S2G064200
Ledus.S2	AUGUSTUS	transcript	4855984	4856779	.	-	.	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	stop_codon	4855981	4855983	.	-	0	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	CDS	4855984	4856085	1	-	0	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	exon	4855984	4856085	.	-	.	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	intron	4856086	4856176	.	-	.	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	CDS	4856177	4856284	1	-	0	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	exon	4856177	4856284	.	-	.	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	intron	4856285	4856365	.	-	.	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	CDS	4856366	4856471	1	-	1	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	exon	4856366	4856471	.	-	.	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	intron	4856472	4856556	.	-	.	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	CDS	4856557	4856578	1	-	2	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	exon	4856557	4856578	.	-	.	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	intron	4856579	4856673	.	-	.	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	CDS	4856674	4856779	1	-	0	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	exon	4856674	4856779	.	-	.	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
Ledus.S2	AUGUSTUS	start_codon	4856777	4856779	.	-	0	transcript_id "Ledus.S2G064200.t1"; gene_id "Ledus.S2G064200"
# This transcript jg9681.t2 is derived from g10711.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9682.t1 is derived from g10712.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8991634	8994345	.	+	.	Ledus.S3G115900
Ledus.S3	AUGUSTUS	transcript	8991634	8994345	.	+	.	transcript_id "Ledus.S3G115900.t1"; gene_id "Ledus.S3G115900"
Ledus.S3	AUGUSTUS	start_codon	8991634	8991636	.	+	0	transcript_id "Ledus.S3G115900.t1"; gene_id "Ledus.S3G115900"
Ledus.S3	AUGUSTUS	CDS	8991634	8994345	0.76	+	0	transcript_id "Ledus.S3G115900.t1"; gene_id "Ledus.S3G115900"
Ledus.S3	AUGUSTUS	exon	8991634	8994345	.	+	.	transcript_id "Ledus.S3G115900.t1"; gene_id "Ledus.S3G115900"
Ledus.S3	AUGUSTUS	stop_codon	8994346	8994348	.	+	0	transcript_id "Ledus.S3G115900.t1"; gene_id "Ledus.S3G115900"
# This transcript jg4779.t2 is derived from g2217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4779.t3 is derived from g2217.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4779.t4 is derived from g2217.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4780.t1 is derived from g2218.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19744801	19747837	.	-	.	Ledus.S1G220100
Ledus.S1	AUGUSTUS	transcript	19744801	19747837	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	stop_codon	19744798	19744800	.	-	0	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	CDS	19744801	19744895	0.47	-	2	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	exon	19744801	19744895	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	intron	19744896	19745116	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	CDS	19745117	19745183	0.74	-	0	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	exon	19745117	19745183	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	intron	19745184	19745321	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	CDS	19745322	19745391	1	-	1	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	exon	19745322	19745391	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	intron	19745392	19745598	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	CDS	19745599	19745690	1	-	0	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	exon	19745599	19745690	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	intron	19745691	19745832	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	CDS	19745833	19745926	1	-	1	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	exon	19745833	19745926	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	intron	19745927	19746088	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	CDS	19746089	19746224	0.99	-	2	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	exon	19746089	19746224	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	intron	19746225	19746327	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	CDS	19746328	19746403	1	-	0	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	exon	19746328	19746403	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	intron	19746404	19746492	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	CDS	19746493	19746672	1	-	0	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	exon	19746493	19746672	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	intron	19746673	19746764	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	CDS	19746765	19746769	0.87	-	2	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	exon	19746765	19746769	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	intron	19746770	19746970	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	CDS	19746971	19746983	0.43	-	0	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	exon	19746971	19746983	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	intron	19746984	19747189	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	CDS	19747190	19747317	1	-	2	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	exon	19747190	19747317	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	intron	19747318	19747434	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	CDS	19747435	19747837	0.45	-	0	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	exon	19747435	19747837	.	-	.	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
Ledus.S1	AUGUSTUS	start_codon	19747835	19747837	.	-	0	transcript_id "Ledus.S1G220100.t1"; gene_id "Ledus.S1G220100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8973.t1 is derived from g10003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3636200	3636601	.	-	.	Ledus.S3G045000
Ledus.S3	AUGUSTUS	transcript	3636200	3636601	.	-	.	transcript_id "Ledus.S3G045000.t1"; gene_id "Ledus.S3G045000"
Ledus.S3	AUGUSTUS	stop_codon	3636197	3636199	.	-	0	transcript_id "Ledus.S3G045000.t1"; gene_id "Ledus.S3G045000"
Ledus.S3	AUGUSTUS	CDS	3636200	3636462	0.72	-	2	transcript_id "Ledus.S3G045000.t1"; gene_id "Ledus.S3G045000"
Ledus.S3	AUGUSTUS	exon	3636200	3636462	.	-	.	transcript_id "Ledus.S3G045000.t1"; gene_id "Ledus.S3G045000"
Ledus.S3	AUGUSTUS	intron	3636463	3636570	.	-	.	transcript_id "Ledus.S3G045000.t1"; gene_id "Ledus.S3G045000"
Ledus.S3	AUGUSTUS	CDS	3636571	3636601	0.7	-	0	transcript_id "Ledus.S3G045000.t1"; gene_id "Ledus.S3G045000"
Ledus.S3	AUGUSTUS	exon	3636571	3636601	.	-	.	transcript_id "Ledus.S3G045000.t1"; gene_id "Ledus.S3G045000"
Ledus.S3	AUGUSTUS	start_codon	3636599	3636601	.	-	0	transcript_id "Ledus.S3G045000.t1"; gene_id "Ledus.S3G045000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3497.t1 is derived from g932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8773454	8776169	.	-	.	Ledus.S1G091800
Ledus.S1	AUGUSTUS	transcript	8773454	8776169	.	-	.	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	stop_codon	8773451	8773453	.	-	0	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	CDS	8773454	8774042	1	-	1	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	exon	8773454	8774042	.	-	.	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	intron	8774043	8774143	.	-	.	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	CDS	8774144	8774272	1	-	1	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	exon	8774144	8774272	.	-	.	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	intron	8774273	8774345	.	-	.	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	CDS	8774346	8775889	1	-	0	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	exon	8774346	8775889	.	-	.	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	intron	8775890	8775971	.	-	.	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	CDS	8775972	8776169	0.51	-	0	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	exon	8775972	8776169	.	-	.	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
Ledus.S1	AUGUSTUS	start_codon	8776167	8776169	.	-	0	transcript_id "Ledus.S1G091800.t1"; gene_id "Ledus.S1G091800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6967.t1 is derived from g6498.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	421635	428993	.	+	.	Ledus.C7G002800
Ledus.C7	AUGUSTUS	transcript	421635	428993	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	start_codon	421635	421637	.	+	0	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	421635	422053	0.32	+	0	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	421635	422053	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	422054	422155	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	422156	424818	1	+	1	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	422156	424818	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	424819	425039	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	425040	425157	1	+	2	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	425040	425157	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	425158	425295	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	425296	425377	1	+	1	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	425296	425377	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	425378	425467	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	425468	425570	1	+	0	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	425468	425570	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	425571	425667	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	425668	425764	1	+	2	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	425668	425764	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	425765	426033	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	426034	426136	1	+	1	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	426034	426136	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	426137	426318	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	426319	426453	1	+	0	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	426319	426453	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	426454	426637	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	426638	426685	1	+	0	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	426638	426685	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	426686	426784	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	426785	426879	1	+	0	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	426785	426879	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	426880	427032	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	427033	427098	1	+	1	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	427033	427098	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	427099	427196	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	427197	427356	1	+	1	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	427197	427356	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	427357	427435	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	427436	427546	1	+	0	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	427436	427546	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	427547	427633	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	427634	427683	1	+	0	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	427634	427683	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	427684	427774	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	427775	427809	1	+	1	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	427775	427809	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	427810	427888	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	427889	427950	1	+	2	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	427889	427950	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	427951	428120	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	428121	428282	1	+	0	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	428121	428282	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	428283	428372	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	428373	428461	1	+	0	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	428373	428461	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	428462	428614	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	428615	428714	0.98	+	1	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	428615	428714	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	intron	428715	428816	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	CDS	428817	428993	0.38	+	0	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	exon	428817	428993	.	+	.	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
Ledus.C7	AUGUSTUS	stop_codon	428994	428996	.	+	0	transcript_id "Ledus.C7G002800.t1"; gene_id "Ledus.C7G002800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1414.t1 is derived from g8275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9949996	9950292	.	+	.	Ledus.S2G129600
Ledus.S2	AUGUSTUS	transcript	9949996	9950292	.	+	.	transcript_id "Ledus.S2G129600.t1"; gene_id "Ledus.S2G129600"
Ledus.S2	AUGUSTUS	start_codon	9949996	9949998	.	+	0	transcript_id "Ledus.S2G129600.t1"; gene_id "Ledus.S2G129600"
Ledus.S2	AUGUSTUS	CDS	9949996	9950292	0.56	+	0	transcript_id "Ledus.S2G129600.t1"; gene_id "Ledus.S2G129600"
Ledus.S2	AUGUSTUS	exon	9949996	9950292	.	+	.	transcript_id "Ledus.S2G129600.t1"; gene_id "Ledus.S2G129600"
Ledus.S2	AUGUSTUS	stop_codon	9950293	9950295	.	+	0	transcript_id "Ledus.S2G129600.t1"; gene_id "Ledus.S2G129600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10172.t1 is derived from g11202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13442767	13444460	.	+	.	Ledus.S3G164900
Ledus.S3	AUGUSTUS	transcript	13442767	13444460	.	+	.	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	start_codon	13442767	13442769	.	+	0	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	CDS	13442767	13442848	0.97	+	0	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	exon	13442767	13442848	.	+	.	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	intron	13442849	13442917	.	+	.	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	CDS	13442918	13443139	1	+	2	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	exon	13442918	13443139	.	+	.	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	intron	13443140	13443212	.	+	.	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	CDS	13443213	13443368	1	+	2	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	exon	13443213	13443368	.	+	.	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	intron	13443369	13443441	.	+	.	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	CDS	13443442	13443657	0.7	+	2	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	exon	13443442	13443657	.	+	.	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	intron	13443658	13443785	.	+	.	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	CDS	13443786	13443943	0.93	+	2	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	exon	13443786	13443943	.	+	.	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	intron	13443944	13444025	.	+	.	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	CDS	13444026	13444460	1	+	0	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	exon	13444026	13444460	.	+	.	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
Ledus.S3	AUGUSTUS	stop_codon	13444461	13444463	.	+	0	transcript_id "Ledus.S3G164900.t1"; gene_id "Ledus.S3G164900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2505.t1 is derived from g9368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18504361	18508068	.	+	.	Ledus.S2G238700
Ledus.S2	AUGUSTUS	transcript	18504361	18508068	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	start_codon	18504361	18504363	.	+	0	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18504361	18504449	0.51	+	0	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18504361	18504449	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18504450	18504938	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18504939	18505021	1	+	1	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18504939	18505021	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18505022	18505146	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18505147	18505199	1	+	2	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18505147	18505199	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18505200	18505292	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18505293	18505367	1	+	0	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18505293	18505367	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18505368	18505459	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18505460	18505552	1	+	0	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18505460	18505552	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18505553	18505631	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18505632	18505880	1	+	0	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18505632	18505880	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18505881	18506061	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18506062	18506134	1	+	0	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18506062	18506134	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18506135	18506228	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18506229	18506329	1	+	2	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18506229	18506329	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18506330	18506529	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18506530	18506615	1	+	0	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18506530	18506615	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18506616	18506739	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18506740	18506815	1	+	1	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18506740	18506815	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18506816	18506911	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18506912	18506979	1	+	0	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18506912	18506979	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18506980	18507103	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18507104	18507170	1	+	1	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18507104	18507170	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18507171	18507319	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18507320	18507415	1	+	0	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18507320	18507415	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18507416	18507594	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18507595	18507697	1	+	0	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18507595	18507697	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18507698	18507787	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18507788	18507883	1	+	2	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18507788	18507883	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	intron	18507884	18508000	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	CDS	18508001	18508068	0.99	+	2	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	exon	18508001	18508068	.	+	.	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
Ledus.S2	AUGUSTUS	stop_codon	18508069	18508071	.	+	0	transcript_id "Ledus.S2G238700.t1"; gene_id "Ledus.S2G238700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3848.t1 is derived from g1284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13159989	13160501	.	+	.	Ledus.S1G126900
Ledus.S1	AUGUSTUS	transcript	13159989	13160501	.	+	.	transcript_id "Ledus.S1G126900.t1"; gene_id "Ledus.S1G126900"
Ledus.S1	AUGUSTUS	start_codon	13159989	13159991	.	+	0	transcript_id "Ledus.S1G126900.t1"; gene_id "Ledus.S1G126900"
Ledus.S1	AUGUSTUS	CDS	13159989	13160022	0.73	+	0	transcript_id "Ledus.S1G126900.t1"; gene_id "Ledus.S1G126900"
Ledus.S1	AUGUSTUS	exon	13159989	13160022	.	+	.	transcript_id "Ledus.S1G126900.t1"; gene_id "Ledus.S1G126900"
Ledus.S1	AUGUSTUS	intron	13160023	13160115	.	+	.	transcript_id "Ledus.S1G126900.t1"; gene_id "Ledus.S1G126900"
Ledus.S1	AUGUSTUS	CDS	13160116	13160501	0.77	+	2	transcript_id "Ledus.S1G126900.t1"; gene_id "Ledus.S1G126900"
Ledus.S1	AUGUSTUS	exon	13160116	13160501	.	+	.	transcript_id "Ledus.S1G126900.t1"; gene_id "Ledus.S1G126900"
Ledus.S1	AUGUSTUS	stop_codon	13160502	13160504	.	+	0	transcript_id "Ledus.S1G126900.t1"; gene_id "Ledus.S1G126900"
# This transcript jg5562.t2 is derived from g3001.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5563.t1 is derived from g3002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25163612	25164337	.	+	.	Ledus.S1G298400
Ledus.S1	AUGUSTUS	transcript	25163612	25164337	.	+	.	transcript_id "Ledus.S1G298400.t1"; gene_id "Ledus.S1G298400"
Ledus.S1	AUGUSTUS	start_codon	25163612	25163614	.	+	0	transcript_id "Ledus.S1G298400.t1"; gene_id "Ledus.S1G298400"
Ledus.S1	AUGUSTUS	CDS	25163612	25164337	1	+	0	transcript_id "Ledus.S1G298400.t1"; gene_id "Ledus.S1G298400"
Ledus.S1	AUGUSTUS	exon	25163612	25164337	.	+	.	transcript_id "Ledus.S1G298400.t1"; gene_id "Ledus.S1G298400"
Ledus.S1	AUGUSTUS	stop_codon	25164338	25164340	.	+	0	transcript_id "Ledus.S1G298400.t1"; gene_id "Ledus.S1G298400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10015.t1 is derived from g11045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11876316	11878136	.	-	.	Ledus.S3G149200
Ledus.S3	AUGUSTUS	transcript	11876316	11878136	.	-	.	transcript_id "Ledus.S3G149200.t1"; gene_id "Ledus.S3G149200"
Ledus.S3	AUGUSTUS	stop_codon	11876313	11876315	.	-	0	transcript_id "Ledus.S3G149200.t1"; gene_id "Ledus.S3G149200"
Ledus.S3	AUGUSTUS	CDS	11876316	11877892	0.75	-	2	transcript_id "Ledus.S3G149200.t1"; gene_id "Ledus.S3G149200"
Ledus.S3	AUGUSTUS	exon	11876316	11877892	.	-	.	transcript_id "Ledus.S3G149200.t1"; gene_id "Ledus.S3G149200"
Ledus.S3	AUGUSTUS	intron	11877893	11877967	.	-	.	transcript_id "Ledus.S3G149200.t1"; gene_id "Ledus.S3G149200"
Ledus.S3	AUGUSTUS	CDS	11877968	11878136	0.63	-	0	transcript_id "Ledus.S3G149200.t1"; gene_id "Ledus.S3G149200"
Ledus.S3	AUGUSTUS	exon	11877968	11878136	.	-	.	transcript_id "Ledus.S3G149200.t1"; gene_id "Ledus.S3G149200"
Ledus.S3	AUGUSTUS	start_codon	11878134	11878136	.	-	0	transcript_id "Ledus.S3G149200.t1"; gene_id "Ledus.S3G149200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1836.t1 is derived from g8699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12899458	12900344	.	+	.	Ledus.S2G171800
Ledus.S2	AUGUSTUS	transcript	12899458	12900344	.	+	.	transcript_id "Ledus.S2G171800.t1"; gene_id "Ledus.S2G171800"
Ledus.S2	AUGUSTUS	start_codon	12899458	12899460	.	+	0	transcript_id "Ledus.S2G171800.t1"; gene_id "Ledus.S2G171800"
Ledus.S2	AUGUSTUS	CDS	12899458	12899553	0.68	+	0	transcript_id "Ledus.S2G171800.t1"; gene_id "Ledus.S2G171800"
Ledus.S2	AUGUSTUS	exon	12899458	12899553	.	+	.	transcript_id "Ledus.S2G171800.t1"; gene_id "Ledus.S2G171800"
Ledus.S2	AUGUSTUS	intron	12899554	12899836	.	+	.	transcript_id "Ledus.S2G171800.t1"; gene_id "Ledus.S2G171800"
Ledus.S2	AUGUSTUS	CDS	12899837	12900107	0.99	+	0	transcript_id "Ledus.S2G171800.t1"; gene_id "Ledus.S2G171800"
Ledus.S2	AUGUSTUS	exon	12899837	12900107	.	+	.	transcript_id "Ledus.S2G171800.t1"; gene_id "Ledus.S2G171800"
Ledus.S2	AUGUSTUS	intron	12900108	12900204	.	+	.	transcript_id "Ledus.S2G171800.t1"; gene_id "Ledus.S2G171800"
Ledus.S2	AUGUSTUS	CDS	12900205	12900344	0.46	+	2	transcript_id "Ledus.S2G171800.t1"; gene_id "Ledus.S2G171800"
Ledus.S2	AUGUSTUS	exon	12900205	12900344	.	+	.	transcript_id "Ledus.S2G171800.t1"; gene_id "Ledus.S2G171800"
Ledus.S2	AUGUSTUS	stop_codon	12900345	12900347	.	+	0	transcript_id "Ledus.S2G171800.t1"; gene_id "Ledus.S2G171800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7729.t1 is derived from g12400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5598641	5602866	.	+	.	Ledus.S5G050700
Ledus.S5	AUGUSTUS	transcript	5598641	5602866	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	start_codon	5598641	5598643	.	+	0	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5598641	5598663	0.8	+	0	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5598641	5598663	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5598664	5598759	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5598760	5598820	0.95	+	1	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5598760	5598820	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5598821	5598994	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5598995	5599261	0.99	+	0	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5598995	5599261	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5599262	5599439	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5599440	5599631	1	+	0	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5599440	5599631	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5599632	5599852	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5599853	5599951	1	+	0	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5599853	5599951	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5599952	5600081	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5600082	5600213	1	+	0	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5600082	5600213	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5600214	5600302	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5600303	5600545	1	+	0	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5600303	5600545	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5600546	5600764	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5600765	5601064	0.99	+	0	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5600765	5601064	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5601065	5601223	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5601224	5601369	0.93	+	0	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5601224	5601369	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5601370	5601593	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5601594	5601671	1	+	1	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5601594	5601671	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5601672	5601786	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5601787	5601919	1	+	1	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5601787	5601919	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5601920	5602077	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5602078	5602330	1	+	0	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5602078	5602330	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5602331	5602426	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5602427	5602604	1	+	2	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5602427	5602604	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	intron	5602605	5602742	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	CDS	5602743	5602866	0.81	+	1	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	exon	5602743	5602866	.	+	.	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
Ledus.S5	AUGUSTUS	stop_codon	5602867	5602869	.	+	0	transcript_id "Ledus.S5G050700.t1"; gene_id "Ledus.S5G050700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12807.t1 is derived from g6429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14868882	14871893	.	+	.	Ledus.S4G196300
Ledus.S4	AUGUSTUS	transcript	14868882	14871893	.	+	.	transcript_id "Ledus.S4G196300.t1"; gene_id "Ledus.S4G196300"
Ledus.S4	AUGUSTUS	start_codon	14868882	14868884	.	+	0	transcript_id "Ledus.S4G196300.t1"; gene_id "Ledus.S4G196300"
Ledus.S4	AUGUSTUS	CDS	14868882	14871893	1	+	0	transcript_id "Ledus.S4G196300.t1"; gene_id "Ledus.S4G196300"
Ledus.S4	AUGUSTUS	exon	14868882	14871893	.	+	.	transcript_id "Ledus.S4G196300.t1"; gene_id "Ledus.S4G196300"
Ledus.S4	AUGUSTUS	stop_codon	14871894	14871896	.	+	0	transcript_id "Ledus.S4G196300.t1"; gene_id "Ledus.S4G196300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10768.t1 is derived from g11800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17559306	17561972	.	-	.	Ledus.S3G224500
Ledus.S3	AUGUSTUS	transcript	17559306	17561972	.	-	.	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	stop_codon	17559303	17559305	.	-	0	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	CDS	17559306	17559715	0.84	-	2	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	exon	17559306	17559715	.	-	.	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	intron	17559716	17559802	.	-	.	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	CDS	17559803	17560099	0.77	-	2	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	exon	17559803	17560099	.	-	.	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	intron	17560100	17560432	.	-	.	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	CDS	17560433	17561524	0.72	-	2	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	exon	17560433	17561524	.	-	.	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	intron	17561525	17561605	.	-	.	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	CDS	17561606	17561617	0.99	-	2	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	exon	17561606	17561617	.	-	.	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	intron	17561618	17561760	.	-	.	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	CDS	17561761	17561780	1	-	1	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	exon	17561761	17561780	.	-	.	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	intron	17561781	17561952	.	-	.	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	CDS	17561953	17561972	0.78	-	0	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	exon	17561953	17561972	.	-	.	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
Ledus.S3	AUGUSTUS	start_codon	17561970	17561972	.	-	0	transcript_id "Ledus.S3G224500.t1"; gene_id "Ledus.S3G224500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11663.t1 is derived from g5282.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5809670	5810818	.	-	.	Ledus.S4G081900
Ledus.S4	AUGUSTUS	transcript	5809670	5810818	.	-	.	transcript_id "Ledus.S4G081900.t1"; gene_id "Ledus.S4G081900"
Ledus.S4	AUGUSTUS	stop_codon	5809667	5809669	.	-	0	transcript_id "Ledus.S4G081900.t1"; gene_id "Ledus.S4G081900"
Ledus.S4	AUGUSTUS	CDS	5809670	5810818	0.63	-	0	transcript_id "Ledus.S4G081900.t1"; gene_id "Ledus.S4G081900"
Ledus.S4	AUGUSTUS	exon	5809670	5810818	.	-	.	transcript_id "Ledus.S4G081900.t1"; gene_id "Ledus.S4G081900"
Ledus.S4	AUGUSTUS	start_codon	5810816	5810818	.	-	0	transcript_id "Ledus.S4G081900.t1"; gene_id "Ledus.S4G081900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8826.t1 is derived from g9856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2184339	2184740	.	+	.	Ledus.S3G030300
Ledus.S3	AUGUSTUS	transcript	2184339	2184740	.	+	.	transcript_id "Ledus.S3G030300.t1"; gene_id "Ledus.S3G030300"
Ledus.S3	AUGUSTUS	start_codon	2184339	2184341	.	+	0	transcript_id "Ledus.S3G030300.t1"; gene_id "Ledus.S3G030300"
Ledus.S3	AUGUSTUS	CDS	2184339	2184740	0.41	+	0	transcript_id "Ledus.S3G030300.t1"; gene_id "Ledus.S3G030300"
Ledus.S3	AUGUSTUS	exon	2184339	2184740	.	+	.	transcript_id "Ledus.S3G030300.t1"; gene_id "Ledus.S3G030300"
Ledus.S3	AUGUSTUS	stop_codon	2184741	2184743	.	+	0	transcript_id "Ledus.S3G030300.t1"; gene_id "Ledus.S3G030300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2255.t1 is derived from g9118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16584195	16585450	.	-	.	Ledus.S2G213700
Ledus.S2	AUGUSTUS	transcript	16584195	16585450	.	-	.	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	stop_codon	16584192	16584194	.	-	0	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	CDS	16584195	16584554	0.65	-	0	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	exon	16584195	16584554	.	-	.	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	intron	16584555	16584644	.	-	.	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	CDS	16584645	16584725	0.63	-	0	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	exon	16584645	16584725	.	-	.	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	intron	16584726	16584803	.	-	.	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	CDS	16584804	16584990	0.85	-	1	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	exon	16584804	16584990	.	-	.	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	intron	16584991	16585361	.	-	.	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	CDS	16585362	16585450	0.43	-	0	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	exon	16585362	16585450	.	-	.	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
Ledus.S2	AUGUSTUS	start_codon	16585448	16585450	.	-	0	transcript_id "Ledus.S2G213700.t1"; gene_id "Ledus.S2G213700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12812.t1 is derived from g6434.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14962415	14965591	.	-	.	Ledus.S4G196800
Ledus.S4	AUGUSTUS	transcript	14962415	14965591	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	stop_codon	14962412	14962414	.	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14962415	14962441	0.92	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14962415	14962441	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	intron	14962442	14962660	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14962661	14962708	0.85	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14962661	14962708	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	intron	14962709	14962890	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14962891	14963010	0.76	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14962891	14963010	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	intron	14963011	14963276	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14963277	14963300	0.76	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14963277	14963300	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	intron	14963301	14963364	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14963365	14963394	0.76	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14963365	14963394	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	intron	14963395	14963523	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14963524	14963568	1	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14963524	14963568	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	intron	14963569	14963763	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14963764	14963808	0.99	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14963764	14963808	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	intron	14963809	14963917	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14963918	14964157	1	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14963918	14964157	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	intron	14964158	14964386	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14964387	14964461	1	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14964387	14964461	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	intron	14964462	14964747	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14964748	14964869	1	-	2	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14964748	14964869	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	intron	14964870	14965019	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14965020	14965158	1	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14965020	14965158	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	intron	14965159	14965263	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14965264	14965293	1	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14965264	14965293	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	intron	14965294	14965375	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	CDS	14965376	14965591	0.35	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	exon	14965376	14965591	.	-	.	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
Ledus.S4	AUGUSTUS	start_codon	14965589	14965591	.	-	0	transcript_id "Ledus.S4G196800.t1"; gene_id "Ledus.S4G196800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6963.t1 is derived from g6494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	410227	414721	.	+	.	Ledus.C7G002400
Ledus.C7	AUGUSTUS	transcript	410227	414721	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	start_codon	410227	410229	.	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	410227	410386	0.34	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	410227	410386	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	410387	410559	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	410560	410777	1	+	2	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	410560	410777	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	410778	410857	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	410858	411049	1	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	410858	411049	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	411050	411145	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	411146	411197	1	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	411146	411197	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	411198	411335	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	411336	411430	1	+	2	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	411336	411430	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	411431	411637	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	411638	411827	1	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	411638	411827	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	411828	411977	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	411978	412083	1	+	2	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	411978	412083	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	412084	412190	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	412191	412335	0.98	+	1	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	412191	412335	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	412336	412443	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	412444	412602	1	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	412444	412602	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	412603	412728	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	412729	412917	0.99	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	412729	412917	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	412918	413032	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	413033	413191	1	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	413033	413191	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	413192	413354	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	413355	413470	1	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	413355	413470	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	413471	413623	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	413624	413780	0.53	+	1	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	413624	413780	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	413781	413884	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	413885	413932	0.54	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	413885	413932	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	413933	414024	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	414025	414050	0.54	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	414025	414050	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	414051	414146	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	414147	414260	0.52	+	1	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	414147	414260	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	414261	414404	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	414405	414507	0.99	+	1	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	414405	414507	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	intron	414508	414709	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	CDS	414710	414721	1	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	exon	414710	414721	.	+	.	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
Ledus.C7	AUGUSTUS	stop_codon	414722	414724	.	+	0	transcript_id "Ledus.C7G002400.t1"; gene_id "Ledus.C7G002400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7773.t1 is derived from g12444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6427740	6428736	.	+	.	Ledus.S5G055100
Ledus.S5	AUGUSTUS	transcript	6427740	6428736	.	+	.	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	start_codon	6427740	6427742	.	+	0	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	CDS	6427740	6427897	0.74	+	0	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	exon	6427740	6427897	.	+	.	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	intron	6427898	6427977	.	+	.	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	CDS	6427978	6428080	1	+	1	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	exon	6427978	6428080	.	+	.	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	intron	6428081	6428168	.	+	.	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	CDS	6428169	6428309	1	+	0	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	exon	6428169	6428309	.	+	.	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	intron	6428310	6428382	.	+	.	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	CDS	6428383	6428505	0.6	+	0	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	exon	6428383	6428505	.	+	.	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	intron	6428506	6428586	.	+	.	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	CDS	6428587	6428736	0.91	+	0	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	exon	6428587	6428736	.	+	.	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
Ledus.S5	AUGUSTUS	stop_codon	6428737	6428739	.	+	0	transcript_id "Ledus.S5G055100.t1"; gene_id "Ledus.S5G055100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12819.t1 is derived from g6441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15043166	15053256	.	+	.	Ledus.S4G197500
Ledus.S4	AUGUSTUS	transcript	15043166	15053256	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	start_codon	15043166	15043168	.	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15043166	15043206	0.58	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15043166	15043206	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15043207	15043388	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15043389	15043566	0.99	+	1	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15043389	15043566	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15043567	15043664	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15043665	15043829	0.92	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15043665	15043829	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15043830	15043910	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15043911	15044053	0.67	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15043911	15044053	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15044054	15044172	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15044173	15044278	0.95	+	1	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15044173	15044278	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15044279	15044538	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15044539	15044625	1	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15044539	15044625	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15044626	15044710	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15044711	15044782	1	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15044711	15044782	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15044783	15044968	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15044969	15045067	1	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15044969	15045067	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15045068	15045198	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15045199	15045340	1	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15045199	15045340	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15045341	15045513	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15045514	15045893	1	+	2	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15045514	15045893	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15045894	15046093	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15046094	15046491	0.93	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15046094	15046491	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15046492	15046611	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15046612	15047007	0.99	+	1	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15046612	15047007	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15047008	15047170	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15047171	15047398	0.65	+	1	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15047171	15047398	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15047399	15047742	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15047743	15047833	1	+	1	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15047743	15047833	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15047834	15047933	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15047934	15048011	0.99	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15047934	15048011	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15048012	15048127	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15048128	15048412	0.95	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15048128	15048412	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15048413	15048531	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15048532	15048729	0.97	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15048532	15048729	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15048730	15048860	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15048861	15049334	0.82	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15048861	15049334	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15049335	15049520	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15049521	15049682	1	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15049521	15049682	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15049683	15049776	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15049777	15050079	1	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15049777	15050079	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15050080	15050256	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15050257	15050339	1	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15050257	15050339	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15050340	15050472	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15050473	15050577	1	+	1	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15050473	15050577	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15050578	15050701	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15050702	15050942	0.89	+	1	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15050702	15050942	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15050943	15051050	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15051051	15051416	0.46	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15051051	15051416	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15051417	15051706	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15051707	15051808	1	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15051707	15051808	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15051809	15051895	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15051896	15052036	1	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15051896	15052036	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15052037	15052219	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15052220	15052308	1	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15052220	15052308	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15052309	15052411	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15052412	15052494	1	+	1	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15052412	15052494	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15052495	15052581	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15052582	15052697	0.96	+	2	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15052582	15052697	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15052698	15052806	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15052807	15052892	1	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15052807	15052892	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15052893	15052974	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15052975	15053074	0.93	+	1	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15052975	15053074	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	intron	15053075	15053193	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	CDS	15053194	15053256	0.92	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	exon	15053194	15053256	.	+	.	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
Ledus.S4	AUGUSTUS	stop_codon	15053257	15053259	.	+	0	transcript_id "Ledus.S4G197500.t1"; gene_id "Ledus.S4G197500"
# This transcript jg8734.t2 is derived from g9764.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8735.t1 is derived from g9765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1682700	1685093	.	+	.	Ledus.S3G021200
Ledus.S3	AUGUSTUS	transcript	1682700	1685093	.	+	.	transcript_id "Ledus.S3G021200.t1"; gene_id "Ledus.S3G021200"
Ledus.S3	AUGUSTUS	start_codon	1682700	1682702	.	+	0	transcript_id "Ledus.S3G021200.t1"; gene_id "Ledus.S3G021200"
Ledus.S3	AUGUSTUS	CDS	1682700	1685093	0.99	+	0	transcript_id "Ledus.S3G021200.t1"; gene_id "Ledus.S3G021200"
Ledus.S3	AUGUSTUS	exon	1682700	1685093	.	+	.	transcript_id "Ledus.S3G021200.t1"; gene_id "Ledus.S3G021200"
Ledus.S3	AUGUSTUS	stop_codon	1685094	1685096	.	+	0	transcript_id "Ledus.S3G021200.t1"; gene_id "Ledus.S3G021200"
Ledus.S3	AUGUSTUS	transcript	1682742	1685093	.	+	.	transcript_id "Ledus.S3G021200.t2"; gene_id "Ledus.S3G021200"
Ledus.S3	AUGUSTUS	start_codon	1682742	1682744	.	+	0	transcript_id "Ledus.S3G021200.t2"; gene_id "Ledus.S3G021200"
Ledus.S3	AUGUSTUS	CDS	1682742	1685093	0.81	+	0	transcript_id "Ledus.S3G021200.t2"; gene_id "Ledus.S3G021200"
Ledus.S3	AUGUSTUS	exon	1682742	1685093	.	+	.	transcript_id "Ledus.S3G021200.t2"; gene_id "Ledus.S3G021200"
Ledus.S3	AUGUSTUS	stop_codon	1685094	1685096	.	+	0	transcript_id "Ledus.S3G021200.t2"; gene_id "Ledus.S3G021200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4170.t1 is derived from g1606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15097922	15099337	.	-	.	Ledus.S1G159100
Ledus.S1	AUGUSTUS	transcript	15097922	15099337	.	-	.	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	stop_codon	15097919	15097921	.	-	0	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	CDS	15097922	15098202	1	-	2	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	exon	15097922	15098202	.	-	.	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	intron	15098203	15098286	.	-	.	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	CDS	15098287	15098487	1	-	2	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	exon	15098287	15098487	.	-	.	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	intron	15098488	15098633	.	-	.	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	CDS	15098634	15098727	1	-	0	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	exon	15098634	15098727	.	-	.	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	intron	15098728	15098821	.	-	.	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	CDS	15098822	15098983	1	-	0	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	exon	15098822	15098983	.	-	.	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	intron	15098984	15099100	.	-	.	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	CDS	15099101	15099337	0.66	-	0	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	exon	15099101	15099337	.	-	.	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
Ledus.S1	AUGUSTUS	start_codon	15099335	15099337	.	-	0	transcript_id "Ledus.S1G159100.t1"; gene_id "Ledus.S1G159100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7571.t1 is derived from g12242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4095297	4096406	.	-	.	Ledus.S5G034900
Ledus.S5	AUGUSTUS	transcript	4095297	4096406	.	-	.	transcript_id "Ledus.S5G034900.t1"; gene_id "Ledus.S5G034900"
Ledus.S5	AUGUSTUS	stop_codon	4095294	4095296	.	-	0	transcript_id "Ledus.S5G034900.t1"; gene_id "Ledus.S5G034900"
Ledus.S5	AUGUSTUS	CDS	4095297	4096406	0.95	-	0	transcript_id "Ledus.S5G034900.t1"; gene_id "Ledus.S5G034900"
Ledus.S5	AUGUSTUS	exon	4095297	4096406	.	-	.	transcript_id "Ledus.S5G034900.t1"; gene_id "Ledus.S5G034900"
Ledus.S5	AUGUSTUS	start_codon	4096404	4096406	.	-	0	transcript_id "Ledus.S5G034900.t1"; gene_id "Ledus.S5G034900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10578.t1 is derived from g11608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16227498	16233744	.	-	.	Ledus.S3G205500
Ledus.S3	AUGUSTUS	transcript	16227498	16233744	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	stop_codon	16227495	16227497	.	-	0	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	CDS	16227498	16227602	0.94	-	0	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	exon	16227498	16227602	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	intron	16227603	16227726	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	CDS	16227727	16227814	0.94	-	1	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	exon	16227727	16227814	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	intron	16227815	16227920	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	CDS	16227921	16228058	0.99	-	1	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	exon	16227921	16228058	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	intron	16228059	16228221	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	CDS	16228222	16228325	1	-	0	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	exon	16228222	16228325	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	intron	16228326	16228485	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	CDS	16228486	16228544	0.3	-	2	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	exon	16228486	16228544	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	intron	16228545	16228622	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	CDS	16228623	16228788	1	-	0	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	exon	16228623	16228788	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	intron	16228789	16229003	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	CDS	16229004	16231568	0.32	-	0	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	exon	16229004	16231568	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	intron	16231569	16231908	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	CDS	16231909	16232019	1	-	0	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	exon	16231909	16232019	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	intron	16232020	16232114	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	CDS	16232115	16232225	1	-	0	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	exon	16232115	16232225	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	intron	16232226	16232374	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	CDS	16232375	16232677	1	-	0	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	exon	16232375	16232677	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	intron	16232678	16232985	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	CDS	16232986	16233380	0.84	-	2	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	exon	16232986	16233380	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	intron	16233381	16233476	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	CDS	16233477	16233744	0.82	-	0	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	exon	16233477	16233744	.	-	.	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
Ledus.S3	AUGUSTUS	start_codon	16233742	16233744	.	-	0	transcript_id "Ledus.S3G205500.t1"; gene_id "Ledus.S3G205500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg95.t1 is derived from g9508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	398873	399915	.	-	.	Ledus.C8G005500
Ledus.C8	AUGUSTUS	transcript	398873	399915	.	-	.	transcript_id "Ledus.C8G005500.t1"; gene_id "Ledus.C8G005500"
Ledus.C8	AUGUSTUS	stop_codon	398870	398872	.	-	0	transcript_id "Ledus.C8G005500.t1"; gene_id "Ledus.C8G005500"
Ledus.C8	AUGUSTUS	CDS	398873	399018	0.99	-	2	transcript_id "Ledus.C8G005500.t1"; gene_id "Ledus.C8G005500"
Ledus.C8	AUGUSTUS	exon	398873	399018	.	-	.	transcript_id "Ledus.C8G005500.t1"; gene_id "Ledus.C8G005500"
Ledus.C8	AUGUSTUS	intron	399019	399140	.	-	.	transcript_id "Ledus.C8G005500.t1"; gene_id "Ledus.C8G005500"
Ledus.C8	AUGUSTUS	CDS	399141	399232	0.55	-	1	transcript_id "Ledus.C8G005500.t1"; gene_id "Ledus.C8G005500"
Ledus.C8	AUGUSTUS	exon	399141	399232	.	-	.	transcript_id "Ledus.C8G005500.t1"; gene_id "Ledus.C8G005500"
Ledus.C8	AUGUSTUS	intron	399233	399337	.	-	.	transcript_id "Ledus.C8G005500.t1"; gene_id "Ledus.C8G005500"
Ledus.C8	AUGUSTUS	CDS	399338	399915	0.58	-	0	transcript_id "Ledus.C8G005500.t1"; gene_id "Ledus.C8G005500"
Ledus.C8	AUGUSTUS	exon	399338	399915	.	-	.	transcript_id "Ledus.C8G005500.t1"; gene_id "Ledus.C8G005500"
Ledus.C8	AUGUSTUS	start_codon	399913	399915	.	-	0	transcript_id "Ledus.C8G005500.t1"; gene_id "Ledus.C8G005500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6140.t1 is derived from g3583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29170768	29171747	.	+	.	Ledus.S1G356100
Ledus.S1	AUGUSTUS	transcript	29170768	29171747	.	+	.	transcript_id "Ledus.S1G356100.t1"; gene_id "Ledus.S1G356100"
Ledus.S1	AUGUSTUS	start_codon	29170768	29170770	.	+	0	transcript_id "Ledus.S1G356100.t1"; gene_id "Ledus.S1G356100"
Ledus.S1	AUGUSTUS	CDS	29170768	29170831	0.53	+	0	transcript_id "Ledus.S1G356100.t1"; gene_id "Ledus.S1G356100"
Ledus.S1	AUGUSTUS	exon	29170768	29170831	.	+	.	transcript_id "Ledus.S1G356100.t1"; gene_id "Ledus.S1G356100"
Ledus.S1	AUGUSTUS	intron	29170832	29171067	.	+	.	transcript_id "Ledus.S1G356100.t1"; gene_id "Ledus.S1G356100"
Ledus.S1	AUGUSTUS	CDS	29171068	29171747	1	+	2	transcript_id "Ledus.S1G356100.t1"; gene_id "Ledus.S1G356100"
Ledus.S1	AUGUSTUS	exon	29171068	29171747	.	+	.	transcript_id "Ledus.S1G356100.t1"; gene_id "Ledus.S1G356100"
Ledus.S1	AUGUSTUS	stop_codon	29171748	29171750	.	+	0	transcript_id "Ledus.S1G356100.t1"; gene_id "Ledus.S1G356100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5098.t1 is derived from g2537.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21581965	21582847	.	+	.	Ledus.S1G251900
Ledus.S1	AUGUSTUS	transcript	21581965	21582847	.	+	.	transcript_id "Ledus.S1G251900.t1"; gene_id "Ledus.S1G251900"
Ledus.S1	AUGUSTUS	start_codon	21581965	21581967	.	+	0	transcript_id "Ledus.S1G251900.t1"; gene_id "Ledus.S1G251900"
Ledus.S1	AUGUSTUS	CDS	21581965	21582063	0.35	+	0	transcript_id "Ledus.S1G251900.t1"; gene_id "Ledus.S1G251900"
Ledus.S1	AUGUSTUS	exon	21581965	21582063	.	+	.	transcript_id "Ledus.S1G251900.t1"; gene_id "Ledus.S1G251900"
Ledus.S1	AUGUSTUS	intron	21582064	21582382	.	+	.	transcript_id "Ledus.S1G251900.t1"; gene_id "Ledus.S1G251900"
Ledus.S1	AUGUSTUS	CDS	21582383	21582847	0.85	+	0	transcript_id "Ledus.S1G251900.t1"; gene_id "Ledus.S1G251900"
Ledus.S1	AUGUSTUS	exon	21582383	21582847	.	+	.	transcript_id "Ledus.S1G251900.t1"; gene_id "Ledus.S1G251900"
Ledus.S1	AUGUSTUS	stop_codon	21582848	21582850	.	+	0	transcript_id "Ledus.S1G251900.t1"; gene_id "Ledus.S1G251900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10574.t1 is derived from g11604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16220976	16221977	.	-	.	Ledus.S3G205100
Ledus.S3	AUGUSTUS	transcript	16220976	16221977	.	-	.	transcript_id "Ledus.S3G205100.t1"; gene_id "Ledus.S3G205100"
Ledus.S3	AUGUSTUS	stop_codon	16220973	16220975	.	-	0	transcript_id "Ledus.S3G205100.t1"; gene_id "Ledus.S3G205100"
Ledus.S3	AUGUSTUS	CDS	16220976	16221977	0.4	-	0	transcript_id "Ledus.S3G205100.t1"; gene_id "Ledus.S3G205100"
Ledus.S3	AUGUSTUS	exon	16220976	16221977	.	-	.	transcript_id "Ledus.S3G205100.t1"; gene_id "Ledus.S3G205100"
Ledus.S3	AUGUSTUS	start_codon	16221975	16221977	.	-	0	transcript_id "Ledus.S3G205100.t1"; gene_id "Ledus.S3G205100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4505.t1 is derived from g1941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17407471	17412392	.	+	.	Ledus.S1G192600
Ledus.S1	AUGUSTUS	transcript	17407471	17412392	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	start_codon	17407471	17407473	.	+	0	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	CDS	17407471	17410074	0.67	+	0	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	exon	17407471	17410074	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	intron	17410075	17410270	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	CDS	17410271	17410408	0.89	+	0	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	exon	17410271	17410408	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	intron	17410409	17410612	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	CDS	17410613	17410678	1	+	0	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	exon	17410613	17410678	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	intron	17410679	17410902	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	CDS	17410903	17410944	1	+	0	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	exon	17410903	17410944	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	intron	17410945	17411065	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	CDS	17411066	17411161	1	+	0	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	exon	17411066	17411161	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	intron	17411162	17411246	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	CDS	17411247	17411354	1	+	0	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	exon	17411247	17411354	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	intron	17411355	17411523	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	CDS	17411524	17411610	1	+	0	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	exon	17411524	17411610	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	intron	17411611	17411763	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	CDS	17411764	17411843	1	+	0	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	exon	17411764	17411843	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	intron	17411844	17411923	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	CDS	17411924	17411976	1	+	1	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	exon	17411924	17411976	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	intron	17411977	17412072	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	CDS	17412073	17412392	0.99	+	2	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	exon	17412073	17412392	.	+	.	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
Ledus.S1	AUGUSTUS	stop_codon	17412393	17412395	.	+	0	transcript_id "Ledus.S1G192600.t1"; gene_id "Ledus.S1G192600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6037.t1 is derived from g3480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28616152	28619027	.	-	.	Ledus.S1G345800
Ledus.S1	AUGUSTUS	transcript	28616152	28619027	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	stop_codon	28616149	28616151	.	-	0	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28616152	28616376	0.96	-	0	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28616152	28616376	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	intron	28616377	28616481	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28616482	28616551	1	-	1	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28616482	28616551	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	intron	28616552	28616709	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28616710	28616872	0.92	-	2	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28616710	28616872	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	intron	28616873	28616988	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28616989	28617151	0.73	-	0	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28616989	28617151	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	intron	28617152	28617273	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28617274	28617321	0.77	-	0	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28617274	28617321	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	intron	28617322	28617480	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28617481	28617534	1	-	0	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28617481	28617534	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	intron	28617535	28617627	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28617628	28617741	1	-	0	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28617628	28617741	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	intron	28617742	28617842	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28617843	28617941	0.99	-	0	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28617843	28617941	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	intron	28617942	28618063	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28618064	28618180	0.99	-	0	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28618064	28618180	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	intron	28618181	28618279	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28618280	28618372	1	-	0	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28618280	28618372	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	intron	28618373	28618508	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28618509	28618547	0.95	-	0	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28618509	28618547	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	intron	28618548	28618658	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28618659	28618810	0.93	-	2	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28618659	28618810	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	intron	28618811	28618948	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	CDS	28618949	28619027	0.96	-	0	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	exon	28618949	28619027	.	-	.	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
Ledus.S1	AUGUSTUS	start_codon	28619025	28619027	.	-	0	transcript_id "Ledus.S1G345800.t1"; gene_id "Ledus.S1G345800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12442.t1 is derived from g6063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12024242	12025576	.	+	.	Ledus.S4G159800
Ledus.S4	AUGUSTUS	transcript	12024242	12025576	.	+	.	transcript_id "Ledus.S4G159800.t1"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	start_codon	12024242	12024244	.	+	0	transcript_id "Ledus.S4G159800.t1"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	CDS	12024242	12024406	0.91	+	0	transcript_id "Ledus.S4G159800.t1"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	exon	12024242	12024406	.	+	.	transcript_id "Ledus.S4G159800.t1"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	intron	12024407	12024506	.	+	.	transcript_id "Ledus.S4G159800.t1"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	CDS	12024507	12024940	1	+	0	transcript_id "Ledus.S4G159800.t1"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	exon	12024507	12024940	.	+	.	transcript_id "Ledus.S4G159800.t1"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	intron	12024941	12025134	.	+	.	transcript_id "Ledus.S4G159800.t1"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	CDS	12025135	12025576	0.99	+	1	transcript_id "Ledus.S4G159800.t1"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	exon	12025135	12025576	.	+	.	transcript_id "Ledus.S4G159800.t1"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	stop_codon	12025577	12025579	.	+	0	transcript_id "Ledus.S4G159800.t1"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	transcript	12024242	12025576	.	+	.	transcript_id "Ledus.S4G159800.t2"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	start_codon	12024242	12024244	.	+	0	transcript_id "Ledus.S4G159800.t2"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	CDS	12024242	12024406	0.9	+	0	transcript_id "Ledus.S4G159800.t2"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	exon	12024242	12024406	.	+	.	transcript_id "Ledus.S4G159800.t2"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	intron	12024407	12024506	.	+	.	transcript_id "Ledus.S4G159800.t2"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	CDS	12024507	12024940	1	+	0	transcript_id "Ledus.S4G159800.t2"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	exon	12024507	12024940	.	+	.	transcript_id "Ledus.S4G159800.t2"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	intron	12024941	12025131	.	+	.	transcript_id "Ledus.S4G159800.t2"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	CDS	12025132	12025576	0.96	+	1	transcript_id "Ledus.S4G159800.t2"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	exon	12025132	12025576	.	+	.	transcript_id "Ledus.S4G159800.t2"; gene_id "Ledus.S4G159800"
Ledus.S4	AUGUSTUS	stop_codon	12025577	12025579	.	+	0	transcript_id "Ledus.S4G159800.t2"; gene_id "Ledus.S4G159800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg558.t1 is derived from g7419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3351746	3352511	.	-	.	Ledus.S2G044000
Ledus.S2	AUGUSTUS	transcript	3351746	3352511	.	-	.	transcript_id "Ledus.S2G044000.t1"; gene_id "Ledus.S2G044000"
Ledus.S2	AUGUSTUS	stop_codon	3351743	3351745	.	-	0	transcript_id "Ledus.S2G044000.t1"; gene_id "Ledus.S2G044000"
Ledus.S2	AUGUSTUS	CDS	3351746	3352240	0.64	-	0	transcript_id "Ledus.S2G044000.t1"; gene_id "Ledus.S2G044000"
Ledus.S2	AUGUSTUS	exon	3351746	3352240	.	-	.	transcript_id "Ledus.S2G044000.t1"; gene_id "Ledus.S2G044000"
Ledus.S2	AUGUSTUS	intron	3352241	3352385	.	-	.	transcript_id "Ledus.S2G044000.t1"; gene_id "Ledus.S2G044000"
Ledus.S2	AUGUSTUS	CDS	3352386	3352511	0.44	-	0	transcript_id "Ledus.S2G044000.t1"; gene_id "Ledus.S2G044000"
Ledus.S2	AUGUSTUS	exon	3352386	3352511	.	-	.	transcript_id "Ledus.S2G044000.t1"; gene_id "Ledus.S2G044000"
Ledus.S2	AUGUSTUS	start_codon	3352509	3352511	.	-	0	transcript_id "Ledus.S2G044000.t1"; gene_id "Ledus.S2G044000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7582.t1 is derived from g12253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4183084	4184788	.	-	.	Ledus.S5G036000
Ledus.S5	AUGUSTUS	transcript	4183084	4184788	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	stop_codon	4183081	4183083	.	-	0	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	CDS	4183084	4183233	1	-	0	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	exon	4183084	4183233	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	intron	4183234	4183312	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	CDS	4183313	4183391	1	-	1	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	exon	4183313	4183391	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	intron	4183392	4183480	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	CDS	4183481	4183576	1	-	1	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	exon	4183481	4183576	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	intron	4183577	4183677	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	CDS	4183678	4183799	0.78	-	0	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	exon	4183678	4183799	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	intron	4183800	4183888	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	CDS	4183889	4183963	0.58	-	0	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	exon	4183889	4183963	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	intron	4183964	4184048	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	CDS	4184049	4184130	0.75	-	1	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	exon	4184049	4184130	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	intron	4184131	4184205	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	CDS	4184206	4184311	0.91	-	2	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	exon	4184206	4184311	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	intron	4184312	4184421	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	CDS	4184422	4184451	0.37	-	2	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	exon	4184422	4184451	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	intron	4184452	4184557	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	CDS	4184558	4184627	0.41	-	0	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	exon	4184558	4184627	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	intron	4184628	4184761	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	CDS	4184762	4184788	0.33	-	0	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	exon	4184762	4184788	.	-	.	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
Ledus.S5	AUGUSTUS	start_codon	4184786	4184788	.	-	0	transcript_id "Ledus.S5G036000.t1"; gene_id "Ledus.S5G036000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6075.t1 is derived from g3518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28821894	28823818	.	-	.	Ledus.S1G349600
Ledus.S1	AUGUSTUS	transcript	28821894	28823818	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	stop_codon	28821891	28821893	.	-	0	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	CDS	28821894	28822011	0.65	-	1	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	exon	28821894	28822011	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	intron	28822012	28822153	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	CDS	28822154	28822227	1	-	0	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	exon	28822154	28822227	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	intron	28822228	28822373	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	CDS	28822374	28822455	1	-	1	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	exon	28822374	28822455	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	intron	28822456	28822570	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	CDS	28822571	28822662	0.99	-	0	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	exon	28822571	28822662	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	intron	28822663	28822749	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	CDS	28822750	28822827	0.99	-	0	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	exon	28822750	28822827	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	intron	28822828	28822904	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	CDS	28822905	28823069	0.49	-	0	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	exon	28822905	28823069	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	intron	28823070	28823189	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	CDS	28823190	28823277	0.69	-	1	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	exon	28823190	28823277	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	intron	28823278	28823543	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	CDS	28823544	28823818	0.99	-	0	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	exon	28823544	28823818	.	-	.	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
Ledus.S1	AUGUSTUS	start_codon	28823816	28823818	.	-	0	transcript_id "Ledus.S1G349600.t1"; gene_id "Ledus.S1G349600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10266.t1 is derived from g11296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13908713	13909447	.	-	.	Ledus.S3G174300
Ledus.S3	AUGUSTUS	transcript	13908713	13909447	.	-	.	transcript_id "Ledus.S3G174300.t1"; gene_id "Ledus.S3G174300"
Ledus.S3	AUGUSTUS	stop_codon	13908710	13908712	.	-	0	transcript_id "Ledus.S3G174300.t1"; gene_id "Ledus.S3G174300"
Ledus.S3	AUGUSTUS	CDS	13908713	13908905	0.93	-	1	transcript_id "Ledus.S3G174300.t1"; gene_id "Ledus.S3G174300"
Ledus.S3	AUGUSTUS	exon	13908713	13908905	.	-	.	transcript_id "Ledus.S3G174300.t1"; gene_id "Ledus.S3G174300"
Ledus.S3	AUGUSTUS	intron	13908906	13909274	.	-	.	transcript_id "Ledus.S3G174300.t1"; gene_id "Ledus.S3G174300"
Ledus.S3	AUGUSTUS	CDS	13909275	13909447	0.97	-	0	transcript_id "Ledus.S3G174300.t1"; gene_id "Ledus.S3G174300"
Ledus.S3	AUGUSTUS	exon	13909275	13909447	.	-	.	transcript_id "Ledus.S3G174300.t1"; gene_id "Ledus.S3G174300"
Ledus.S3	AUGUSTUS	start_codon	13909445	13909447	.	-	0	transcript_id "Ledus.S3G174300.t1"; gene_id "Ledus.S3G174300"
# This transcript jg11674.t2 is derived from g5293.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11675.t1 is derived from g5294.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5912745	5915338	.	+	.	Ledus.S4G083100
Ledus.S4	AUGUSTUS	transcript	5912745	5915338	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	start_codon	5912745	5912747	.	+	0	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5912745	5912855	0.98	+	0	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5912745	5912855	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5912856	5912939	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5912940	5913012	1	+	0	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5912940	5913012	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5913013	5913091	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5913092	5913322	1	+	2	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5913092	5913322	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5913323	5913422	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5913423	5913604	1	+	2	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5913423	5913604	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5913605	5913691	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5913692	5913832	1	+	0	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5913692	5913832	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5913833	5913909	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5913910	5913969	1	+	0	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5913910	5913969	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5913970	5914120	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5914121	5914285	0.96	+	0	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5914121	5914285	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5914286	5914388	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5914389	5914445	0.97	+	0	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5914389	5914445	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5914446	5914522	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5914523	5914587	1	+	0	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5914523	5914587	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5914588	5914675	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5914676	5914799	1	+	1	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5914676	5914799	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5914800	5914920	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5914921	5915058	1	+	0	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5914921	5915058	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5915059	5915209	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5915210	5915338	1	+	0	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5915210	5915338	.	+	.	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	stop_codon	5915339	5915341	.	+	0	transcript_id "Ledus.S4G083100.t1"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	transcript	5912745	5915338	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	start_codon	5912745	5912747	.	+	0	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5912745	5912855	0.96	+	0	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5912745	5912855	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5912856	5912939	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5912940	5913012	1	+	0	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5912940	5913012	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5913013	5913091	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5913092	5913322	1	+	2	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5913092	5913322	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5913323	5913422	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5913423	5913604	1	+	2	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5913423	5913604	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5913605	5913691	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5913692	5913832	1	+	0	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5913692	5913832	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5913833	5913909	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5913910	5913969	1	+	0	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5913910	5913969	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5913970	5914120	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5914121	5914285	0.97	+	0	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5914121	5914285	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5914286	5914388	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5914389	5914445	0.98	+	0	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5914389	5914445	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5914446	5914522	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5914523	5914587	1	+	0	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5914523	5914587	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5914588	5914675	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5914676	5914799	1	+	1	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5914676	5914799	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5914800	5914920	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5914921	5915058	1	+	0	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5914921	5915058	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	intron	5915059	5915278	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	CDS	5915279	5915338	0.85	+	0	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	exon	5915279	5915338	.	+	.	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
Ledus.S4	AUGUSTUS	stop_codon	5915339	5915341	.	+	0	transcript_id "Ledus.S4G083100.t2"; gene_id "Ledus.S4G083100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10809.t1 is derived from g11841.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17872619	17873869	.	-	.	Ledus.S3G228600
Ledus.S3	AUGUSTUS	transcript	17872619	17873869	.	-	.	transcript_id "Ledus.S3G228600.t1"; gene_id "Ledus.S3G228600"
Ledus.S3	AUGUSTUS	stop_codon	17872616	17872618	.	-	0	transcript_id "Ledus.S3G228600.t1"; gene_id "Ledus.S3G228600"
Ledus.S3	AUGUSTUS	CDS	17872619	17873869	0.9	-	0	transcript_id "Ledus.S3G228600.t1"; gene_id "Ledus.S3G228600"
Ledus.S3	AUGUSTUS	exon	17872619	17873869	.	-	.	transcript_id "Ledus.S3G228600.t1"; gene_id "Ledus.S3G228600"
Ledus.S3	AUGUSTUS	start_codon	17873867	17873869	.	-	0	transcript_id "Ledus.S3G228600.t1"; gene_id "Ledus.S3G228600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5718.t1 is derived from g3157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26210611	26214711	.	+	.	Ledus.S1G313900
Ledus.S1	AUGUSTUS	transcript	26210611	26214711	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	start_codon	26210611	26210613	.	+	0	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26210611	26210701	0.98	+	0	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26210611	26210701	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26210702	26210789	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26210790	26211073	1	+	2	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26210790	26211073	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26211074	26211145	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26211146	26211414	1	+	0	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26211146	26211414	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26211415	26211488	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26211489	26211770	1	+	1	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26211489	26211770	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26211771	26211837	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26211838	26212091	1	+	1	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26211838	26212091	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26212092	26212190	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26212191	26212305	1	+	2	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26212191	26212305	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26212306	26212378	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26212379	26212450	1	+	1	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26212379	26212450	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26212451	26212535	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26212536	26212607	1	+	1	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26212536	26212607	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26212608	26212708	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26212709	26212777	1	+	1	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26212709	26212777	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26212778	26212856	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26212857	26213125	0.8	+	1	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26212857	26213125	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26213126	26213214	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26213215	26213426	1	+	2	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26213215	26213426	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26213427	26213514	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26213515	26213641	1	+	0	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26213515	26213641	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26213642	26213723	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26213724	26213789	1	+	2	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26213724	26213789	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26213790	26213883	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26213884	26214070	1	+	2	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26213884	26214070	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26214071	26214163	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26214164	26214290	1	+	1	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26214164	26214290	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	intron	26214291	26214378	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	CDS	26214379	26214711	1	+	0	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	exon	26214379	26214711	.	+	.	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
Ledus.S1	AUGUSTUS	stop_codon	26214712	26214714	.	+	0	transcript_id "Ledus.S1G313900.t1"; gene_id "Ledus.S1G313900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10091.t1 is derived from g11121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12603240	12604703	.	+	.	Ledus.S3G156800
Ledus.S3	AUGUSTUS	transcript	12603240	12604703	.	+	.	transcript_id "Ledus.S3G156800.t1"; gene_id "Ledus.S3G156800"
Ledus.S3	AUGUSTUS	start_codon	12603240	12603242	.	+	0	transcript_id "Ledus.S3G156800.t1"; gene_id "Ledus.S3G156800"
Ledus.S3	AUGUSTUS	CDS	12603240	12604703	1	+	0	transcript_id "Ledus.S3G156800.t1"; gene_id "Ledus.S3G156800"
Ledus.S3	AUGUSTUS	exon	12603240	12604703	.	+	.	transcript_id "Ledus.S3G156800.t1"; gene_id "Ledus.S3G156800"
Ledus.S3	AUGUSTUS	stop_codon	12604704	12604706	.	+	0	transcript_id "Ledus.S3G156800.t1"; gene_id "Ledus.S3G156800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4127.t1 is derived from g1563.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14842259	14845039	.	-	.	Ledus.S1G154800
Ledus.S1	AUGUSTUS	transcript	14842259	14845039	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	stop_codon	14842256	14842258	.	-	0	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	CDS	14842259	14842318	0.99	-	0	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	exon	14842259	14842318	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	intron	14842319	14842398	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	CDS	14842399	14842534	1	-	1	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	exon	14842399	14842534	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	intron	14842535	14842612	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	CDS	14842613	14842730	1	-	2	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	exon	14842613	14842730	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	intron	14842731	14843013	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	CDS	14843014	14843115	1	-	2	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	exon	14843014	14843115	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	intron	14843116	14843292	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	CDS	14843293	14843360	1	-	1	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	exon	14843293	14843360	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	intron	14843361	14843905	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	CDS	14843906	14844123	1	-	0	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	exon	14843906	14844123	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	intron	14844124	14844306	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	CDS	14844307	14844708	1	-	0	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	exon	14844307	14844708	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	intron	14844709	14844958	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	CDS	14844959	14845039	0.71	-	0	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	exon	14844959	14845039	.	-	.	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
Ledus.S1	AUGUSTUS	start_codon	14845037	14845039	.	-	0	transcript_id "Ledus.S1G154800.t1"; gene_id "Ledus.S1G154800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9056.t1 is derived from g10086.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4238789	4244622	.	-	.	Ledus.S3G053300
Ledus.S3	AUGUSTUS	transcript	4238789	4244622	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	stop_codon	4238786	4238788	.	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4238789	4239067	1	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4238789	4239067	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4239068	4239164	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4239165	4239250	0.99	-	2	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4239165	4239250	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4239251	4239364	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4239365	4239437	1	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4239365	4239437	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4239438	4239517	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4239518	4239577	1	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4239518	4239577	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4239578	4239691	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4239692	4239737	0.95	-	1	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4239692	4239737	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4239738	4239916	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4239917	4240014	1	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4239917	4240014	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4240015	4240099	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4240100	4240156	1	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4240100	4240156	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4240157	4240252	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4240253	4240297	1	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4240253	4240297	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4240298	4240398	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4240399	4240584	0.99	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4240399	4240584	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4240585	4240724	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4240725	4240852	1	-	2	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4240725	4240852	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4240853	4240938	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4240939	4241018	1	-	1	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4240939	4241018	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4241019	4241103	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4241104	4242067	0.94	-	2	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4241104	4242067	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4242068	4242169	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4242170	4242275	1	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4242170	4242275	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4242276	4242440	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4242441	4242640	0.99	-	2	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4242441	4242640	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4242641	4242803	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4242804	4242819	0.99	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4242804	4242819	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4242820	4242964	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4242965	4243127	1	-	1	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4242965	4243127	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4243128	4243218	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4243219	4243311	1	-	1	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4243219	4243311	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4243312	4243448	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4243449	4243506	1	-	2	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4243449	4243506	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4243507	4243708	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4243709	4243766	1	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4243709	4243766	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4243767	4243857	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4243858	4244012	1	-	2	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4243858	4244012	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4244013	4244231	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4244232	4244279	1	-	2	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4244232	4244279	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4244280	4244358	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4244359	4244410	1	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4244359	4244410	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4244411	4244496	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4244497	4244622	1	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4244497	4244622	.	-	.	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	start_codon	4244620	4244622	.	-	0	transcript_id "Ledus.S3G053300.t1"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	transcript	4238789	4244622	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	stop_codon	4238786	4238788	.	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4238789	4239067	1	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4238789	4239067	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4239068	4239164	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4239165	4239250	0.97	-	2	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4239165	4239250	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4239251	4239364	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4239365	4239437	1	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4239365	4239437	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4239438	4239517	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4239518	4239577	1	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4239518	4239577	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4239578	4239691	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4239692	4239737	0.97	-	1	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4239692	4239737	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4239738	4239916	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4239917	4240014	1	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4239917	4240014	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4240015	4240099	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4240100	4240156	1	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4240100	4240156	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4240157	4240252	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4240253	4240297	1	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4240253	4240297	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4240298	4240398	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4240399	4240584	0.98	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4240399	4240584	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4240585	4240724	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4240725	4240852	1	-	2	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4240725	4240852	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4240853	4240938	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4240939	4241018	1	-	1	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4240939	4241018	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4241019	4241103	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4241104	4242067	0.94	-	2	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4241104	4242067	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4242068	4242169	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4242170	4242278	1	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4242170	4242278	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4242279	4242440	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4242441	4242640	0.95	-	2	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4242441	4242640	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4242641	4242803	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4242804	4242819	0.95	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4242804	4242819	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4242820	4242964	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4242965	4243127	1	-	1	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4242965	4243127	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4243128	4243218	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4243219	4243311	1	-	1	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4243219	4243311	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4243312	4243448	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4243449	4243506	1	-	2	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4243449	4243506	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4243507	4243708	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4243709	4243766	1	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4243709	4243766	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4243767	4243857	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4243858	4244012	1	-	2	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4243858	4244012	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4244013	4244231	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4244232	4244279	1	-	2	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4244232	4244279	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4244280	4244358	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4244359	4244410	1	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4244359	4244410	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	intron	4244411	4244496	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	CDS	4244497	4244622	1	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	exon	4244497	4244622	.	-	.	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
Ledus.S3	AUGUSTUS	start_codon	4244620	4244622	.	-	0	transcript_id "Ledus.S3G053300.t2"; gene_id "Ledus.S3G053300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2475.t1 is derived from g9338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18366292	18366819	.	-	.	Ledus.S2G235700
Ledus.S2	AUGUSTUS	transcript	18366292	18366819	.	-	.	transcript_id "Ledus.S2G235700.t1"; gene_id "Ledus.S2G235700"
Ledus.S2	AUGUSTUS	stop_codon	18366289	18366291	.	-	0	transcript_id "Ledus.S2G235700.t1"; gene_id "Ledus.S2G235700"
Ledus.S2	AUGUSTUS	CDS	18366292	18366421	1	-	1	transcript_id "Ledus.S2G235700.t1"; gene_id "Ledus.S2G235700"
Ledus.S2	AUGUSTUS	exon	18366292	18366421	.	-	.	transcript_id "Ledus.S2G235700.t1"; gene_id "Ledus.S2G235700"
Ledus.S2	AUGUSTUS	intron	18366422	18366625	.	-	.	transcript_id "Ledus.S2G235700.t1"; gene_id "Ledus.S2G235700"
Ledus.S2	AUGUSTUS	CDS	18366626	18366819	0.29	-	0	transcript_id "Ledus.S2G235700.t1"; gene_id "Ledus.S2G235700"
Ledus.S2	AUGUSTUS	exon	18366626	18366819	.	-	.	transcript_id "Ledus.S2G235700.t1"; gene_id "Ledus.S2G235700"
Ledus.S2	AUGUSTUS	start_codon	18366817	18366819	.	-	0	transcript_id "Ledus.S2G235700.t1"; gene_id "Ledus.S2G235700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9126.t1 is derived from g10156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4706611	4707144	.	-	.	Ledus.S3G060300
Ledus.S3	AUGUSTUS	transcript	4706611	4707144	.	-	.	transcript_id "Ledus.S3G060300.t1"; gene_id "Ledus.S3G060300"
Ledus.S3	AUGUSTUS	stop_codon	4706608	4706610	.	-	0	transcript_id "Ledus.S3G060300.t1"; gene_id "Ledus.S3G060300"
Ledus.S3	AUGUSTUS	CDS	4706611	4707144	1	-	0	transcript_id "Ledus.S3G060300.t1"; gene_id "Ledus.S3G060300"
Ledus.S3	AUGUSTUS	exon	4706611	4707144	.	-	.	transcript_id "Ledus.S3G060300.t1"; gene_id "Ledus.S3G060300"
Ledus.S3	AUGUSTUS	start_codon	4707142	4707144	.	-	0	transcript_id "Ledus.S3G060300.t1"; gene_id "Ledus.S3G060300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8102.t1 is derived from g12773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9144195	9144392	.	-	.	Ledus.S5G088000
Ledus.S5	AUGUSTUS	transcript	9144195	9144392	.	-	.	transcript_id "Ledus.S5G088000.t1"; gene_id "Ledus.S5G088000"
Ledus.S5	AUGUSTUS	stop_codon	9144192	9144194	.	-	0	transcript_id "Ledus.S5G088000.t1"; gene_id "Ledus.S5G088000"
Ledus.S5	AUGUSTUS	CDS	9144195	9144392	0.44	-	0	transcript_id "Ledus.S5G088000.t1"; gene_id "Ledus.S5G088000"
Ledus.S5	AUGUSTUS	exon	9144195	9144392	.	-	.	transcript_id "Ledus.S5G088000.t1"; gene_id "Ledus.S5G088000"
Ledus.S5	AUGUSTUS	start_codon	9144390	9144392	.	-	0	transcript_id "Ledus.S5G088000.t1"; gene_id "Ledus.S5G088000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5464.t1 is derived from g2903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24412701	24413558	.	+	.	Ledus.S1G288500
Ledus.S1	AUGUSTUS	transcript	24412701	24413558	.	+	.	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	start_codon	24412701	24412703	.	+	0	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	CDS	24412701	24412865	0.98	+	0	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	exon	24412701	24412865	.	+	.	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	intron	24412866	24412970	.	+	.	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	CDS	24412971	24413076	0.97	+	0	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	exon	24412971	24413076	.	+	.	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	intron	24413077	24413183	.	+	.	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	CDS	24413184	24413332	0.97	+	2	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	exon	24413184	24413332	.	+	.	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	intron	24413333	24413465	.	+	.	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	CDS	24413466	24413558	1	+	0	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	exon	24413466	24413558	.	+	.	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
Ledus.S1	AUGUSTUS	stop_codon	24413559	24413561	.	+	0	transcript_id "Ledus.S1G288500.t1"; gene_id "Ledus.S1G288500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12302.t1 is derived from g5922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11115298	11117163	.	-	.	Ledus.S4G145800
Ledus.S4	AUGUSTUS	transcript	11115298	11117163	.	-	.	transcript_id "Ledus.S4G145800.t1"; gene_id "Ledus.S4G145800"
Ledus.S4	AUGUSTUS	stop_codon	11115295	11115297	.	-	0	transcript_id "Ledus.S4G145800.t1"; gene_id "Ledus.S4G145800"
Ledus.S4	AUGUSTUS	CDS	11115298	11115444	0.68	-	0	transcript_id "Ledus.S4G145800.t1"; gene_id "Ledus.S4G145800"
Ledus.S4	AUGUSTUS	exon	11115298	11115444	.	-	.	transcript_id "Ledus.S4G145800.t1"; gene_id "Ledus.S4G145800"
Ledus.S4	AUGUSTUS	intron	11115445	11115535	.	-	.	transcript_id "Ledus.S4G145800.t1"; gene_id "Ledus.S4G145800"
Ledus.S4	AUGUSTUS	CDS	11115536	11116329	0.99	-	2	transcript_id "Ledus.S4G145800.t1"; gene_id "Ledus.S4G145800"
Ledus.S4	AUGUSTUS	exon	11115536	11116329	.	-	.	transcript_id "Ledus.S4G145800.t1"; gene_id "Ledus.S4G145800"
Ledus.S4	AUGUSTUS	intron	11116330	11116433	.	-	.	transcript_id "Ledus.S4G145800.t1"; gene_id "Ledus.S4G145800"
Ledus.S4	AUGUSTUS	CDS	11116434	11117163	0.68	-	0	transcript_id "Ledus.S4G145800.t1"; gene_id "Ledus.S4G145800"
Ledus.S4	AUGUSTUS	exon	11116434	11117163	.	-	.	transcript_id "Ledus.S4G145800.t1"; gene_id "Ledus.S4G145800"
Ledus.S4	AUGUSTUS	start_codon	11117161	11117163	.	-	0	transcript_id "Ledus.S4G145800.t1"; gene_id "Ledus.S4G145800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7388.t1 is derived from g12059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2027519	2027824	.	+	.	Ledus.S5G016600
Ledus.S5	AUGUSTUS	transcript	2027519	2027824	.	+	.	transcript_id "Ledus.S5G016600.t1"; gene_id "Ledus.S5G016600"
Ledus.S5	AUGUSTUS	start_codon	2027519	2027521	.	+	0	transcript_id "Ledus.S5G016600.t1"; gene_id "Ledus.S5G016600"
Ledus.S5	AUGUSTUS	CDS	2027519	2027824	0.95	+	0	transcript_id "Ledus.S5G016600.t1"; gene_id "Ledus.S5G016600"
Ledus.S5	AUGUSTUS	exon	2027519	2027824	.	+	.	transcript_id "Ledus.S5G016600.t1"; gene_id "Ledus.S5G016600"
Ledus.S5	AUGUSTUS	stop_codon	2027825	2027827	.	+	0	transcript_id "Ledus.S5G016600.t1"; gene_id "Ledus.S5G016600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8960.t1 is derived from g9990.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3529856	3531058	.	-	.	Ledus.S3G043700
Ledus.S3	AUGUSTUS	transcript	3529856	3531058	.	-	.	transcript_id "Ledus.S3G043700.t1"; gene_id "Ledus.S3G043700"
Ledus.S3	AUGUSTUS	stop_codon	3529853	3529855	.	-	0	transcript_id "Ledus.S3G043700.t1"; gene_id "Ledus.S3G043700"
Ledus.S3	AUGUSTUS	CDS	3529856	3531058	1	-	0	transcript_id "Ledus.S3G043700.t1"; gene_id "Ledus.S3G043700"
Ledus.S3	AUGUSTUS	exon	3529856	3531058	.	-	.	transcript_id "Ledus.S3G043700.t1"; gene_id "Ledus.S3G043700"
Ledus.S3	AUGUSTUS	start_codon	3531056	3531058	.	-	0	transcript_id "Ledus.S3G043700.t1"; gene_id "Ledus.S3G043700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4256.t1 is derived from g1692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15786739	15789286	.	-	.	Ledus.S1G167700
Ledus.S1	AUGUSTUS	transcript	15786739	15789286	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	stop_codon	15786736	15786738	.	-	0	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15786739	15786921	0.97	-	0	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15786739	15786921	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15786922	15787116	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15787117	15787260	1	-	0	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15787117	15787260	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15787261	15787346	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15787347	15787473	1	-	1	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15787347	15787473	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15787474	15787573	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15787574	15787653	1	-	0	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15787574	15787653	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15787654	15787742	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15787743	15787994	1	-	0	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15787743	15787994	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15787995	15788099	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15788100	15788228	1	-	0	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15788100	15788228	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15788229	15788318	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15788319	15788368	1	-	2	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15788319	15788368	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15788369	15788479	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15788480	15788582	1	-	0	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15788480	15788582	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15788583	15788682	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15788683	15788829	1	-	0	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15788683	15788829	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15788830	15788905	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15788906	15788967	1	-	2	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15788906	15788967	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15788968	15789067	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15789068	15789119	1	-	0	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15789068	15789119	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15789120	15789277	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15789278	15789286	1	-	0	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15789278	15789286	.	-	.	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	start_codon	15789284	15789286	.	-	0	transcript_id "Ledus.S1G167700.t1"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	transcript	15786739	15789286	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	stop_codon	15786736	15786738	.	-	0	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15786739	15786921	0.93	-	0	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15786739	15786921	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15786922	15787116	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15787117	15787260	1	-	0	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15787117	15787260	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15787261	15787346	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15787347	15787473	1	-	1	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15787347	15787473	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15787474	15787573	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15787574	15787653	1	-	0	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15787574	15787653	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15787654	15787742	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15787743	15787994	1	-	0	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15787743	15787994	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15787995	15788099	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15788100	15788228	1	-	0	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15788100	15788228	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15788229	15788318	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15788319	15788368	0.99	-	2	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15788319	15788368	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15788369	15788479	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15788480	15788582	0.99	-	0	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15788480	15788582	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15788583	15788682	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15788683	15788799	0.57	-	0	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15788683	15788799	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15788800	15788905	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15788906	15788967	1	-	2	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15788906	15788967	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15788968	15789067	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15789068	15789119	1	-	0	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15789068	15789119	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	intron	15789120	15789277	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	CDS	15789278	15789286	1	-	0	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	exon	15789278	15789286	.	-	.	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
Ledus.S1	AUGUSTUS	start_codon	15789284	15789286	.	-	0	transcript_id "Ledus.S1G167700.t2"; gene_id "Ledus.S1G167700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9450.t1 is derived from g10480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7049295	7055121	.	-	.	Ledus.S3G092700
Ledus.S3	AUGUSTUS	transcript	7049295	7055121	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	stop_codon	7049292	7049294	.	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7049295	7049372	0.86	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7049295	7049372	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7049373	7049505	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7049506	7049647	0.96	-	1	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7049506	7049647	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7049648	7049731	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7049732	7049922	1	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7049732	7049922	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7049923	7050008	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7050009	7050176	1	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7050009	7050176	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7050177	7050270	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7050271	7050435	0.99	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7050271	7050435	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7050436	7050543	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7050544	7050751	0.98	-	1	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7050544	7050751	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7050752	7050860	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7050861	7051058	1	-	1	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7050861	7051058	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7051059	7051140	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7051141	7051229	1	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7051141	7051229	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7051230	7051325	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7051326	7051393	1	-	2	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7051326	7051393	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7051394	7051647	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7051648	7051777	1	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7051648	7051777	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7051778	7051875	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7051876	7052269	0.91	-	1	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7051876	7052269	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7052270	7052363	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7052364	7052402	0.81	-	1	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7052364	7052402	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7052403	7052536	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7052537	7052772	0.46	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7052537	7052772	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7052773	7052865	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7052866	7052915	1	-	2	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7052866	7052915	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7052916	7052997	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7052998	7053164	1	-	1	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7052998	7053164	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7053165	7053244	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7053245	7053381	1	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7053245	7053381	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7053382	7053474	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7053475	7053636	1	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7053475	7053636	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7053637	7053780	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7053781	7053873	1	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7053781	7053873	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7053874	7053955	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7053956	7054018	1	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7053956	7054018	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7054019	7054125	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7054126	7054271	0.85	-	2	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7054126	7054271	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7054272	7054371	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7054372	7054538	1	-	1	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7054372	7054538	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7054539	7054637	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7054638	7054821	1	-	2	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7054638	7054821	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	intron	7054822	7055045	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	CDS	7055046	7055121	1	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	exon	7055046	7055121	.	-	.	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
Ledus.S3	AUGUSTUS	start_codon	7055119	7055121	.	-	0	transcript_id "Ledus.S3G092700.t1"; gene_id "Ledus.S3G092700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9385.t1 is derived from g10415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6462624	6462959	.	-	.	Ledus.S3G086200
Ledus.S3	AUGUSTUS	transcript	6462624	6462959	.	-	.	transcript_id "Ledus.S3G086200.t1"; gene_id "Ledus.S3G086200"
Ledus.S3	AUGUSTUS	stop_codon	6462621	6462623	.	-	0	transcript_id "Ledus.S3G086200.t1"; gene_id "Ledus.S3G086200"
Ledus.S3	AUGUSTUS	CDS	6462624	6462959	0.86	-	0	transcript_id "Ledus.S3G086200.t1"; gene_id "Ledus.S3G086200"
Ledus.S3	AUGUSTUS	exon	6462624	6462959	.	-	.	transcript_id "Ledus.S3G086200.t1"; gene_id "Ledus.S3G086200"
Ledus.S3	AUGUSTUS	start_codon	6462957	6462959	.	-	0	transcript_id "Ledus.S3G086200.t1"; gene_id "Ledus.S3G086200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8499.t1 is derived from g13171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12286999	12291623	.	-	.	Ledus.S5G127700
Ledus.S5	AUGUSTUS	transcript	12286999	12291623	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	stop_codon	12286996	12286998	.	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12286999	12287109	0.88	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12286999	12287109	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12287110	12287193	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12287194	12287289	1	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12287194	12287289	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12287290	12287384	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12287385	12287497	1	-	2	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12287385	12287497	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12287498	12287607	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12287608	12287681	1	-	1	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12287608	12287681	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12287682	12287780	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12287781	12287864	0.99	-	1	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12287781	12287864	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12287865	12287973	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12287974	12288017	0.99	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12287974	12288017	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12288018	12288094	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12288095	12288238	1	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12288095	12288238	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12288239	12288345	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12288346	12288407	1	-	2	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12288346	12288407	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12288408	12288611	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12288612	12288704	1	-	2	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12288612	12288704	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12288705	12288834	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12288835	12288965	1	-	1	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12288835	12288965	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12288966	12289156	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12289157	12289215	1	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12289157	12289215	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12289216	12289321	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12289322	12289405	1	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12289322	12289405	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12289406	12289721	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12289722	12289895	1	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12289722	12289895	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12289896	12289981	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12289982	12290071	1	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12289982	12290071	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12290072	12290203	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12290204	12290275	1	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12290204	12290275	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12290276	12290390	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12290391	12290438	0.97	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12290391	12290438	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12290439	12290558	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12290559	12290671	1	-	2	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12290559	12290671	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12290672	12290756	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12290757	12290820	1	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12290757	12290820	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12290821	12290937	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12290938	12291011	1	-	2	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12290938	12291011	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	intron	12291012	12291586	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	CDS	12291587	12291623	1	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	exon	12291587	12291623	.	-	.	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
Ledus.S5	AUGUSTUS	start_codon	12291621	12291623	.	-	0	transcript_id "Ledus.S5G127700.t1"; gene_id "Ledus.S5G127700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6444.t1 is derived from g3887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31274394	31275791	.	+	.	Ledus.S1G386500
Ledus.S1	AUGUSTUS	transcript	31274394	31275791	.	+	.	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	start_codon	31274394	31274396	.	+	0	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	CDS	31274394	31274478	1	+	0	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	exon	31274394	31274478	.	+	.	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	intron	31274479	31274563	.	+	.	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	CDS	31274564	31274674	1	+	2	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	exon	31274564	31274674	.	+	.	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	intron	31274675	31274739	.	+	.	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	CDS	31274740	31275044	1	+	2	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	exon	31274740	31275044	.	+	.	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	intron	31275045	31275125	.	+	.	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	CDS	31275126	31275791	0.2	+	0	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	exon	31275126	31275791	.	+	.	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
Ledus.S1	AUGUSTUS	stop_codon	31275792	31275794	.	+	0	transcript_id "Ledus.S1G386500.t1"; gene_id "Ledus.S1G386500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1463.t1 is derived from g8324.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10339104	10339806	.	+	.	Ledus.S2G134500
Ledus.S2	AUGUSTUS	transcript	10339104	10339806	.	+	.	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	start_codon	10339104	10339106	.	+	0	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	CDS	10339104	10339204	0.43	+	0	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	exon	10339104	10339204	.	+	.	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	intron	10339205	10339319	.	+	.	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	CDS	10339320	10339419	0.99	+	1	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	exon	10339320	10339419	.	+	.	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	intron	10339420	10339555	.	+	.	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	CDS	10339556	10339601	0.79	+	0	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	exon	10339556	10339601	.	+	.	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	intron	10339602	10339708	.	+	.	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	CDS	10339709	10339806	0.75	+	2	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	exon	10339709	10339806	.	+	.	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
Ledus.S2	AUGUSTUS	stop_codon	10339807	10339809	.	+	0	transcript_id "Ledus.S2G134500.t1"; gene_id "Ledus.S2G134500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11752.t1 is derived from g5371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6562196	6568403	.	+	.	Ledus.S4G090800
Ledus.S4	AUGUSTUS	transcript	6562196	6568403	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	start_codon	6562196	6562198	.	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6562196	6562971	0.96	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6562196	6562971	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6562972	6563085	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6563086	6563219	1	+	1	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6563086	6563219	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6563220	6563293	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6563294	6563411	1	+	2	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6563294	6563411	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6563412	6563734	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6563735	6563924	0.55	+	1	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6563735	6563924	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6563925	6564062	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6564063	6564410	0.94	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6564063	6564410	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6564411	6564495	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6564496	6564574	1	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6564496	6564574	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6564575	6564646	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6564647	6564743	0.99	+	2	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6564647	6564743	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6564744	6564830	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6564831	6564867	1	+	1	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6564831	6564867	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6564868	6564966	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6564967	6565107	1	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6564967	6565107	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6565108	6565206	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6565207	6565320	0.97	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6565207	6565320	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6565321	6565663	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6565664	6565786	0.76	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6565664	6565786	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6565787	6566125	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6566126	6566355	0.91	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6566126	6566355	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6566356	6566656	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6566657	6566866	0.93	+	1	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6566657	6566866	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6566867	6566963	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6566964	6567243	1	+	1	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6566964	6567243	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6567244	6567329	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6567330	6567467	1	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6567330	6567467	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6567468	6567592	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6567593	6567676	1	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6567593	6567676	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6567677	6567824	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6567825	6567848	1	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6567825	6567848	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6567849	6567962	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6567963	6568027	1	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6567963	6568027	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6568028	6568118	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6568119	6568223	0.97	+	1	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6568119	6568223	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	intron	6568224	6568306	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	CDS	6568307	6568403	0.85	+	1	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	exon	6568307	6568403	.	+	.	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
Ledus.S4	AUGUSTUS	stop_codon	6568404	6568406	.	+	0	transcript_id "Ledus.S4G090800.t1"; gene_id "Ledus.S4G090800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8409.t1 is derived from g13081.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11509109	11510802	.	+	.	Ledus.S5G118700
Ledus.S5	AUGUSTUS	transcript	11509109	11510802	.	+	.	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	start_codon	11509109	11509111	.	+	0	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	CDS	11509109	11509187	0.99	+	0	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	exon	11509109	11509187	.	+	.	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	intron	11509188	11510011	.	+	.	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	CDS	11510012	11510297	0.73	+	2	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	exon	11510012	11510297	.	+	.	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	intron	11510298	11510518	.	+	.	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	CDS	11510519	11510543	0.35	+	1	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	exon	11510519	11510543	.	+	.	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	intron	11510544	11510757	.	+	.	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	CDS	11510758	11510802	0.33	+	0	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	exon	11510758	11510802	.	+	.	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
Ledus.S5	AUGUSTUS	stop_codon	11510803	11510805	.	+	0	transcript_id "Ledus.S5G118700.t1"; gene_id "Ledus.S5G118700"
# This transcript jg5803.t2 is derived from g3245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5804.t1 is derived from g3246.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27021461	27022360	.	+	.	Ledus.S1G322500
Ledus.S1	AUGUSTUS	transcript	27021461	27022360	.	+	.	transcript_id "Ledus.S1G322500.t1"; gene_id "Ledus.S1G322500"
Ledus.S1	AUGUSTUS	start_codon	27021461	27021463	.	+	0	transcript_id "Ledus.S1G322500.t1"; gene_id "Ledus.S1G322500"
Ledus.S1	AUGUSTUS	CDS	27021461	27022360	1	+	0	transcript_id "Ledus.S1G322500.t1"; gene_id "Ledus.S1G322500"
Ledus.S1	AUGUSTUS	exon	27021461	27022360	.	+	.	transcript_id "Ledus.S1G322500.t1"; gene_id "Ledus.S1G322500"
Ledus.S1	AUGUSTUS	stop_codon	27022361	27022363	.	+	0	transcript_id "Ledus.S1G322500.t1"; gene_id "Ledus.S1G322500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12568.t1 is derived from g6190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12903893	12905597	.	-	.	Ledus.S4G172400
Ledus.S4	AUGUSTUS	transcript	12903893	12905597	.	-	.	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	stop_codon	12903890	12903892	.	-	0	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	CDS	12903893	12904110	0.83	-	2	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	exon	12903893	12904110	.	-	.	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	intron	12904111	12904228	.	-	.	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	CDS	12904229	12904406	0.61	-	0	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	exon	12904229	12904406	.	-	.	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	intron	12904407	12904531	.	-	.	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	CDS	12904532	12904633	0.69	-	0	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	exon	12904532	12904633	.	-	.	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	intron	12904634	12905001	.	-	.	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	CDS	12905002	12905169	0.53	-	0	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	exon	12905002	12905169	.	-	.	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	intron	12905170	12905348	.	-	.	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	CDS	12905349	12905597	0.52	-	0	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	exon	12905349	12905597	.	-	.	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
Ledus.S4	AUGUSTUS	start_codon	12905595	12905597	.	-	0	transcript_id "Ledus.S4G172400.t1"; gene_id "Ledus.S4G172400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11420.t1 is derived from g5038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4160918	4171525	.	-	.	Ledus.S4G057600
Ledus.S4	AUGUSTUS	transcript	4160918	4171525	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	stop_codon	4160915	4160917	.	-	0	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4160918	4161038	0.98	-	1	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4160918	4161038	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4161039	4161141	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4161142	4161251	0.97	-	0	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4161142	4161251	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4161252	4161340	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4161341	4161510	1	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4161341	4161510	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4161511	4161651	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4161652	4161823	1	-	0	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4161652	4161823	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4161824	4161914	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4161915	4162168	1	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4161915	4162168	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4162169	4162250	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4162251	4162471	0.98	-	1	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4162251	4162471	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4162472	4162550	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4162551	4162724	0.99	-	1	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4162551	4162724	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4162725	4162860	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4162861	4163081	1	-	0	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4162861	4163081	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4163082	4163174	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4163175	4163299	0.98	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4163175	4163299	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4163300	4163424	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4163425	4163730	0.99	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4163425	4163730	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4163731	4163837	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4163838	4164197	1	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4163838	4164197	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4164198	4164291	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4164292	4164627	0.89	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4164292	4164627	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4164628	4164707	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4164708	4165055	0.53	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4164708	4165055	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4165056	4165167	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4165168	4165521	1	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4165168	4165521	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4165522	4165609	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4165610	4165933	1	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4165610	4165933	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4165934	4166024	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4166025	4166366	1	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4166025	4166366	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4166367	4166481	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4166482	4166850	0.45	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4166482	4166850	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4166851	4166975	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4166976	4167371	0.5	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4166976	4167371	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4167372	4167463	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4167464	4167841	0.79	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4167464	4167841	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4167842	4167961	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4167962	4168142	0.48	-	0	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4167962	4168142	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4168143	4168241	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4168242	4168321	0.75	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4168242	4168321	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4168322	4168576	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4168577	4168933	0.42	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4168577	4168933	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4168934	4169114	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4169115	4169486	0.2	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4169115	4169486	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4169487	4169670	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4169671	4170027	0.82	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4169671	4170027	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4170028	4170202	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4170203	4170213	0.63	-	1	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4170203	4170213	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4170214	4170311	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4170312	4170350	0.52	-	1	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4170312	4170350	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4170351	4170445	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4170446	4170650	0.63	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4170446	4170650	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4170651	4170749	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4170750	4171235	1	-	2	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4170750	4171235	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	intron	4171236	4171443	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	CDS	4171444	4171525	0.38	-	0	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	exon	4171444	4171525	.	-	.	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
Ledus.S4	AUGUSTUS	start_codon	4171523	4171525	.	-	0	transcript_id "Ledus.S4G057600.t1"; gene_id "Ledus.S4G057600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8124.t1 is derived from g12795.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9230036	9230734	.	+	.	Ledus.S5G090200
Ledus.S5	AUGUSTUS	transcript	9230036	9230734	.	+	.	transcript_id "Ledus.S5G090200.t1"; gene_id "Ledus.S5G090200"
Ledus.S5	AUGUSTUS	start_codon	9230036	9230038	.	+	0	transcript_id "Ledus.S5G090200.t1"; gene_id "Ledus.S5G090200"
Ledus.S5	AUGUSTUS	CDS	9230036	9230734	0.94	+	0	transcript_id "Ledus.S5G090200.t1"; gene_id "Ledus.S5G090200"
Ledus.S5	AUGUSTUS	exon	9230036	9230734	.	+	.	transcript_id "Ledus.S5G090200.t1"; gene_id "Ledus.S5G090200"
Ledus.S5	AUGUSTUS	stop_codon	9230735	9230737	.	+	0	transcript_id "Ledus.S5G090200.t1"; gene_id "Ledus.S5G090200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8919.t1 is derived from g9949.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3152391	3153338	.	+	.	Ledus.S3G039600
Ledus.S3	AUGUSTUS	transcript	3152391	3153338	.	+	.	transcript_id "Ledus.S3G039600.t1"; gene_id "Ledus.S3G039600"
Ledus.S3	AUGUSTUS	start_codon	3152391	3152393	.	+	0	transcript_id "Ledus.S3G039600.t1"; gene_id "Ledus.S3G039600"
Ledus.S3	AUGUSTUS	CDS	3152391	3153338	0.22	+	0	transcript_id "Ledus.S3G039600.t1"; gene_id "Ledus.S3G039600"
Ledus.S3	AUGUSTUS	exon	3152391	3153338	.	+	.	transcript_id "Ledus.S3G039600.t1"; gene_id "Ledus.S3G039600"
Ledus.S3	AUGUSTUS	stop_codon	3153339	3153341	.	+	0	transcript_id "Ledus.S3G039600.t1"; gene_id "Ledus.S3G039600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4706.t1 is derived from g2144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19143543	19143824	.	-	.	Ledus.S1G212700
Ledus.S1	AUGUSTUS	transcript	19143543	19143824	.	-	.	transcript_id "Ledus.S1G212700.t1"; gene_id "Ledus.S1G212700"
Ledus.S1	AUGUSTUS	stop_codon	19143540	19143542	.	-	0	transcript_id "Ledus.S1G212700.t1"; gene_id "Ledus.S1G212700"
Ledus.S1	AUGUSTUS	CDS	19143543	19143824	0.03	-	0	transcript_id "Ledus.S1G212700.t1"; gene_id "Ledus.S1G212700"
Ledus.S1	AUGUSTUS	exon	19143543	19143824	.	-	.	transcript_id "Ledus.S1G212700.t1"; gene_id "Ledus.S1G212700"
Ledus.S1	AUGUSTUS	start_codon	19143822	19143824	.	-	0	transcript_id "Ledus.S1G212700.t1"; gene_id "Ledus.S1G212700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg607.t1 is derived from g7468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3600160	3601349	.	-	.	Ledus.S2G048900
Ledus.S2	AUGUSTUS	transcript	3600160	3601349	.	-	.	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	stop_codon	3600157	3600159	.	-	0	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	CDS	3600160	3600182	0.98	-	2	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	exon	3600160	3600182	.	-	.	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	intron	3600183	3600337	.	-	.	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	CDS	3600338	3600500	0.55	-	0	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	exon	3600338	3600500	.	-	.	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	intron	3600501	3600659	.	-	.	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	CDS	3600660	3600992	0.13	-	0	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	exon	3600660	3600992	.	-	.	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	intron	3600993	3601048	.	-	.	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	CDS	3601049	3601095	0.18	-	2	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	exon	3601049	3601095	.	-	.	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	intron	3601096	3601282	.	-	.	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	CDS	3601283	3601349	0.74	-	0	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	exon	3601283	3601349	.	-	.	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
Ledus.S2	AUGUSTUS	start_codon	3601347	3601349	.	-	0	transcript_id "Ledus.S2G048900.t1"; gene_id "Ledus.S2G048900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9400.t1 is derived from g10430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6554624	6559243	.	-	.	Ledus.S3G087700
Ledus.S3	AUGUSTUS	transcript	6554624	6559243	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	stop_codon	6554621	6554623	.	-	0	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6554624	6555174	0.99	-	2	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6554624	6555174	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6555175	6555483	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6555484	6556214	1	-	1	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6555484	6556214	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6556215	6556340	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6556341	6556462	1	-	0	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6556341	6556462	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6556463	6556625	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6556626	6556685	1	-	0	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6556626	6556685	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6556686	6556776	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6556777	6556875	1	-	0	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6556777	6556875	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6556876	6556966	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6556967	6557017	1	-	0	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6556967	6557017	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6557018	6557134	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6557135	6557336	1	-	1	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6557135	6557336	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6557337	6557428	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6557429	6557631	1	-	0	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6557429	6557631	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6557632	6557783	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6557784	6557870	1	-	0	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6557784	6557870	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6557871	6557974	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6557975	6558093	1	-	2	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6557975	6558093	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6558094	6558238	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6558239	6558355	1	-	2	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6558239	6558355	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6558356	6558448	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6558449	6558552	1	-	1	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6558449	6558552	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6558553	6558649	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6558650	6558858	0.99	-	0	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6558650	6558858	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	intron	6558859	6558940	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	CDS	6558941	6559243	1	-	0	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	exon	6558941	6559243	.	-	.	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
Ledus.S3	AUGUSTUS	start_codon	6559241	6559243	.	-	0	transcript_id "Ledus.S3G087700.t1"; gene_id "Ledus.S3G087700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7828.t1 is derived from g12499.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7297538	7298202	.	-	.	Ledus.S5G060600
Ledus.S5	AUGUSTUS	transcript	7297538	7298202	.	-	.	transcript_id "Ledus.S5G060600.t1"; gene_id "Ledus.S5G060600"
Ledus.S5	AUGUSTUS	stop_codon	7297535	7297537	.	-	0	transcript_id "Ledus.S5G060600.t1"; gene_id "Ledus.S5G060600"
Ledus.S5	AUGUSTUS	CDS	7297538	7297933	1	-	0	transcript_id "Ledus.S5G060600.t1"; gene_id "Ledus.S5G060600"
Ledus.S5	AUGUSTUS	exon	7297538	7297933	.	-	.	transcript_id "Ledus.S5G060600.t1"; gene_id "Ledus.S5G060600"
Ledus.S5	AUGUSTUS	intron	7297934	7298019	.	-	.	transcript_id "Ledus.S5G060600.t1"; gene_id "Ledus.S5G060600"
Ledus.S5	AUGUSTUS	CDS	7298020	7298202	0.75	-	0	transcript_id "Ledus.S5G060600.t1"; gene_id "Ledus.S5G060600"
Ledus.S5	AUGUSTUS	exon	7298020	7298202	.	-	.	transcript_id "Ledus.S5G060600.t1"; gene_id "Ledus.S5G060600"
Ledus.S5	AUGUSTUS	start_codon	7298200	7298202	.	-	0	transcript_id "Ledus.S5G060600.t1"; gene_id "Ledus.S5G060600"
# This transcript jg3939.t1 is derived from g1375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13655971	13656453	.	+	.	Ledus.S1G136000
Ledus.S1	AUGUSTUS	transcript	13655971	13656453	.	+	.	transcript_id "Ledus.S1G136000.t1"; gene_id "Ledus.S1G136000"
Ledus.S1	AUGUSTUS	start_codon	13655971	13655973	.	+	0	transcript_id "Ledus.S1G136000.t1"; gene_id "Ledus.S1G136000"
Ledus.S1	AUGUSTUS	CDS	13655971	13656453	0.8	+	0	transcript_id "Ledus.S1G136000.t1"; gene_id "Ledus.S1G136000"
Ledus.S1	AUGUSTUS	exon	13655971	13656453	.	+	.	transcript_id "Ledus.S1G136000.t1"; gene_id "Ledus.S1G136000"
Ledus.S1	AUGUSTUS	stop_codon	13656454	13656456	.	+	0	transcript_id "Ledus.S1G136000.t1"; gene_id "Ledus.S1G136000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5883.t1 is derived from g3325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27580873	27581652	.	-	.	Ledus.S1G330400
Ledus.S1	AUGUSTUS	transcript	27580873	27581652	.	-	.	transcript_id "Ledus.S1G330400.t1"; gene_id "Ledus.S1G330400"
Ledus.S1	AUGUSTUS	stop_codon	27580870	27580872	.	-	0	transcript_id "Ledus.S1G330400.t1"; gene_id "Ledus.S1G330400"
Ledus.S1	AUGUSTUS	CDS	27580873	27581260	0.97	-	1	transcript_id "Ledus.S1G330400.t1"; gene_id "Ledus.S1G330400"
Ledus.S1	AUGUSTUS	exon	27580873	27581260	.	-	.	transcript_id "Ledus.S1G330400.t1"; gene_id "Ledus.S1G330400"
Ledus.S1	AUGUSTUS	intron	27581261	27581401	.	-	.	transcript_id "Ledus.S1G330400.t1"; gene_id "Ledus.S1G330400"
Ledus.S1	AUGUSTUS	CDS	27581402	27581652	0.63	-	0	transcript_id "Ledus.S1G330400.t1"; gene_id "Ledus.S1G330400"
Ledus.S1	AUGUSTUS	exon	27581402	27581652	.	-	.	transcript_id "Ledus.S1G330400.t1"; gene_id "Ledus.S1G330400"
Ledus.S1	AUGUSTUS	start_codon	27581650	27581652	.	-	0	transcript_id "Ledus.S1G330400.t1"; gene_id "Ledus.S1G330400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5060.t1 is derived from g2499.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21379677	21381914	.	+	.	Ledus.S1G248100
Ledus.S1	AUGUSTUS	transcript	21379677	21381914	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	start_codon	21379677	21379679	.	+	0	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	CDS	21379677	21379740	0.9	+	0	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	exon	21379677	21379740	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	intron	21379741	21379887	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	CDS	21379888	21379935	1	+	2	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	exon	21379888	21379935	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	intron	21379936	21380083	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	CDS	21380084	21380155	1	+	2	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	exon	21380084	21380155	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	intron	21380156	21380233	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	CDS	21380234	21380283	1	+	2	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	exon	21380234	21380283	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	intron	21380284	21380579	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	CDS	21380580	21380645	0.95	+	0	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	exon	21380580	21380645	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	intron	21380646	21380766	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	CDS	21380767	21380854	0.42	+	0	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	exon	21380767	21380854	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	intron	21380855	21380998	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	CDS	21380999	21381042	0.38	+	2	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	exon	21380999	21381042	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	intron	21381043	21381152	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	CDS	21381153	21381223	1	+	0	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	exon	21381153	21381223	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	intron	21381224	21381311	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	CDS	21381312	21381363	1	+	1	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	exon	21381312	21381363	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	intron	21381364	21381466	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	CDS	21381467	21381556	1	+	0	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	exon	21381467	21381556	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	intron	21381557	21381644	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	CDS	21381645	21381740	1	+	0	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	exon	21381645	21381740	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	intron	21381741	21381809	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	CDS	21381810	21381914	1	+	0	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	exon	21381810	21381914	.	+	.	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
Ledus.S1	AUGUSTUS	stop_codon	21381915	21381917	.	+	0	transcript_id "Ledus.S1G248100.t1"; gene_id "Ledus.S1G248100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4998.t1 is derived from g2436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21078291	21078983	.	+	.	Ledus.S1G241900
Ledus.S1	AUGUSTUS	transcript	21078291	21078983	.	+	.	transcript_id "Ledus.S1G241900.t1"; gene_id "Ledus.S1G241900"
Ledus.S1	AUGUSTUS	start_codon	21078291	21078293	.	+	0	transcript_id "Ledus.S1G241900.t1"; gene_id "Ledus.S1G241900"
Ledus.S1	AUGUSTUS	CDS	21078291	21078983	0.71	+	0	transcript_id "Ledus.S1G241900.t1"; gene_id "Ledus.S1G241900"
Ledus.S1	AUGUSTUS	exon	21078291	21078983	.	+	.	transcript_id "Ledus.S1G241900.t1"; gene_id "Ledus.S1G241900"
Ledus.S1	AUGUSTUS	stop_codon	21078984	21078986	.	+	0	transcript_id "Ledus.S1G241900.t1"; gene_id "Ledus.S1G241900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5734.t1 is derived from g3173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26340462	26341304	.	+	.	Ledus.S1G315500
Ledus.S1	AUGUSTUS	transcript	26340462	26341304	.	+	.	transcript_id "Ledus.S1G315500.t1"; gene_id "Ledus.S1G315500"
Ledus.S1	AUGUSTUS	start_codon	26340462	26340464	.	+	0	transcript_id "Ledus.S1G315500.t1"; gene_id "Ledus.S1G315500"
Ledus.S1	AUGUSTUS	CDS	26340462	26340791	0.42	+	0	transcript_id "Ledus.S1G315500.t1"; gene_id "Ledus.S1G315500"
Ledus.S1	AUGUSTUS	exon	26340462	26340791	.	+	.	transcript_id "Ledus.S1G315500.t1"; gene_id "Ledus.S1G315500"
Ledus.S1	AUGUSTUS	intron	26340792	26340866	.	+	.	transcript_id "Ledus.S1G315500.t1"; gene_id "Ledus.S1G315500"
Ledus.S1	AUGUSTUS	CDS	26340867	26340961	0.66	+	0	transcript_id "Ledus.S1G315500.t1"; gene_id "Ledus.S1G315500"
Ledus.S1	AUGUSTUS	exon	26340867	26340961	.	+	.	transcript_id "Ledus.S1G315500.t1"; gene_id "Ledus.S1G315500"
Ledus.S1	AUGUSTUS	intron	26340962	26341045	.	+	.	transcript_id "Ledus.S1G315500.t1"; gene_id "Ledus.S1G315500"
Ledus.S1	AUGUSTUS	CDS	26341046	26341304	0.62	+	1	transcript_id "Ledus.S1G315500.t1"; gene_id "Ledus.S1G315500"
Ledus.S1	AUGUSTUS	exon	26341046	26341304	.	+	.	transcript_id "Ledus.S1G315500.t1"; gene_id "Ledus.S1G315500"
Ledus.S1	AUGUSTUS	stop_codon	26341305	26341307	.	+	0	transcript_id "Ledus.S1G315500.t1"; gene_id "Ledus.S1G315500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7283.t1 is derived from g11954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	736008	738104	.	-	.	Ledus.S5G006100
Ledus.S5	AUGUSTUS	transcript	736008	738104	.	-	.	transcript_id "Ledus.S5G006100.t1"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	stop_codon	736005	736007	.	-	0	transcript_id "Ledus.S5G006100.t1"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	CDS	736008	737731	1	-	2	transcript_id "Ledus.S5G006100.t1"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	exon	736008	737731	.	-	.	transcript_id "Ledus.S5G006100.t1"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	intron	737732	737887	.	-	.	transcript_id "Ledus.S5G006100.t1"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	CDS	737888	738104	1	-	0	transcript_id "Ledus.S5G006100.t1"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	exon	737888	738104	.	-	.	transcript_id "Ledus.S5G006100.t1"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	start_codon	738102	738104	.	-	0	transcript_id "Ledus.S5G006100.t1"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	transcript	736480	738104	.	-	.	transcript_id "Ledus.S5G006100.t2"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	stop_codon	736477	736479	.	-	0	transcript_id "Ledus.S5G006100.t2"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	CDS	736480	736518	1	-	0	transcript_id "Ledus.S5G006100.t2"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	exon	736480	736518	.	-	.	transcript_id "Ledus.S5G006100.t2"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	intron	736519	736601	.	-	.	transcript_id "Ledus.S5G006100.t2"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	CDS	736602	737731	0.99	-	2	transcript_id "Ledus.S5G006100.t2"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	exon	736602	737731	.	-	.	transcript_id "Ledus.S5G006100.t2"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	intron	737732	737887	.	-	.	transcript_id "Ledus.S5G006100.t2"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	CDS	737888	738104	0.98	-	0	transcript_id "Ledus.S5G006100.t2"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	exon	737888	738104	.	-	.	transcript_id "Ledus.S5G006100.t2"; gene_id "Ledus.S5G006100"
Ledus.S5	AUGUSTUS	start_codon	738102	738104	.	-	0	transcript_id "Ledus.S5G006100.t2"; gene_id "Ledus.S5G006100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5310.t1 is derived from g2749.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23256493	23257945	.	-	.	Ledus.S1G273100
Ledus.S1	AUGUSTUS	transcript	23256493	23257945	.	-	.	transcript_id "Ledus.S1G273100.t1"; gene_id "Ledus.S1G273100"
Ledus.S1	AUGUSTUS	stop_codon	23256490	23256492	.	-	0	transcript_id "Ledus.S1G273100.t1"; gene_id "Ledus.S1G273100"
Ledus.S1	AUGUSTUS	CDS	23256493	23257421	0.67	-	2	transcript_id "Ledus.S1G273100.t1"; gene_id "Ledus.S1G273100"
Ledus.S1	AUGUSTUS	exon	23256493	23257421	.	-	.	transcript_id "Ledus.S1G273100.t1"; gene_id "Ledus.S1G273100"
Ledus.S1	AUGUSTUS	intron	23257422	23257617	.	-	.	transcript_id "Ledus.S1G273100.t1"; gene_id "Ledus.S1G273100"
Ledus.S1	AUGUSTUS	CDS	23257618	23257945	0.74	-	0	transcript_id "Ledus.S1G273100.t1"; gene_id "Ledus.S1G273100"
Ledus.S1	AUGUSTUS	exon	23257618	23257945	.	-	.	transcript_id "Ledus.S1G273100.t1"; gene_id "Ledus.S1G273100"
Ledus.S1	AUGUSTUS	start_codon	23257943	23257945	.	-	0	transcript_id "Ledus.S1G273100.t1"; gene_id "Ledus.S1G273100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12659.t1 is derived from g6281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13688295	13688630	.	-	.	Ledus.S4G181500
Ledus.S4	AUGUSTUS	transcript	13688295	13688630	.	-	.	transcript_id "Ledus.S4G181500.t1"; gene_id "Ledus.S4G181500"
Ledus.S4	AUGUSTUS	stop_codon	13688292	13688294	.	-	0	transcript_id "Ledus.S4G181500.t1"; gene_id "Ledus.S4G181500"
Ledus.S4	AUGUSTUS	CDS	13688295	13688630	0.64	-	0	transcript_id "Ledus.S4G181500.t1"; gene_id "Ledus.S4G181500"
Ledus.S4	AUGUSTUS	exon	13688295	13688630	.	-	.	transcript_id "Ledus.S4G181500.t1"; gene_id "Ledus.S4G181500"
Ledus.S4	AUGUSTUS	start_codon	13688628	13688630	.	-	0	transcript_id "Ledus.S4G181500.t1"; gene_id "Ledus.S4G181500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg695.t1 is derived from g7556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4222505	4223799	.	+	.	Ledus.S2G057700
Ledus.S2	AUGUSTUS	transcript	4222505	4223799	.	+	.	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	start_codon	4222505	4222507	.	+	0	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	CDS	4222505	4222641	0.55	+	0	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	exon	4222505	4222641	.	+	.	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	intron	4222642	4222837	.	+	.	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	CDS	4222838	4222954	1	+	1	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	exon	4222838	4222954	.	+	.	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	intron	4222955	4223142	.	+	.	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	CDS	4223143	4223148	0.91	+	1	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	exon	4223143	4223148	.	+	.	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	intron	4223149	4223518	.	+	.	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	CDS	4223519	4223548	0.8	+	1	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	exon	4223519	4223548	.	+	.	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	intron	4223549	4223795	.	+	.	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	CDS	4223796	4223799	0.89	+	1	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	exon	4223796	4223799	.	+	.	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
Ledus.S2	AUGUSTUS	stop_codon	4223800	4223802	.	+	0	transcript_id "Ledus.S2G057700.t1"; gene_id "Ledus.S2G057700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7783.t1 is derived from g12454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6545741	6548676	.	-	.	Ledus.S5G056100
Ledus.S5	AUGUSTUS	transcript	6545741	6548676	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	stop_codon	6545738	6545740	.	-	0	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	CDS	6545741	6545857	0.99	-	0	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	exon	6545741	6545857	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	intron	6545858	6545965	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	CDS	6545966	6546077	1	-	1	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	exon	6545966	6546077	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	intron	6546078	6546237	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	CDS	6546238	6546338	1	-	0	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	exon	6546238	6546338	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	intron	6546339	6546459	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	CDS	6546460	6546573	1	-	0	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	exon	6546460	6546573	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	intron	6546574	6546674	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	CDS	6546675	6546779	0.97	-	0	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	exon	6546675	6546779	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	intron	6546780	6546871	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	CDS	6546872	6546958	1	-	0	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	exon	6546872	6546958	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	intron	6546959	6547153	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	CDS	6547154	6547213	1	-	0	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	exon	6547154	6547213	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	intron	6547214	6547340	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	CDS	6547341	6547388	1	-	0	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	exon	6547341	6547388	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	intron	6547389	6547647	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	CDS	6547648	6548312	0.89	-	2	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	exon	6547648	6548312	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	intron	6548313	6548476	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	CDS	6548477	6548501	0.9	-	0	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	exon	6548477	6548501	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	intron	6548502	6548565	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	CDS	6548566	6548584	0.81	-	1	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	exon	6548566	6548584	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	intron	6548585	6548662	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	CDS	6548663	6548676	0.91	-	0	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	exon	6548663	6548676	.	-	.	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
Ledus.S5	AUGUSTUS	start_codon	6548674	6548676	.	-	0	transcript_id "Ledus.S5G056100.t1"; gene_id "Ledus.S5G056100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2127.t1 is derived from g8990.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14850912	14851228	.	+	.	Ledus.S2G200900
Ledus.S2	AUGUSTUS	transcript	14850912	14851228	.	+	.	transcript_id "Ledus.S2G200900.t1"; gene_id "Ledus.S2G200900"
Ledus.S2	AUGUSTUS	start_codon	14850912	14850914	.	+	0	transcript_id "Ledus.S2G200900.t1"; gene_id "Ledus.S2G200900"
Ledus.S2	AUGUSTUS	CDS	14850912	14850988	1	+	0	transcript_id "Ledus.S2G200900.t1"; gene_id "Ledus.S2G200900"
Ledus.S2	AUGUSTUS	exon	14850912	14850988	.	+	.	transcript_id "Ledus.S2G200900.t1"; gene_id "Ledus.S2G200900"
Ledus.S2	AUGUSTUS	intron	14850989	14851062	.	+	.	transcript_id "Ledus.S2G200900.t1"; gene_id "Ledus.S2G200900"
Ledus.S2	AUGUSTUS	CDS	14851063	14851228	1	+	1	transcript_id "Ledus.S2G200900.t1"; gene_id "Ledus.S2G200900"
Ledus.S2	AUGUSTUS	exon	14851063	14851228	.	+	.	transcript_id "Ledus.S2G200900.t1"; gene_id "Ledus.S2G200900"
Ledus.S2	AUGUSTUS	stop_codon	14851229	14851231	.	+	0	transcript_id "Ledus.S2G200900.t1"; gene_id "Ledus.S2G200900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg754.t1 is derived from g7615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4831647	4831934	.	-	.	Ledus.S2G063600
Ledus.S2	AUGUSTUS	transcript	4831647	4831934	.	-	.	transcript_id "Ledus.S2G063600.t1"; gene_id "Ledus.S2G063600"
Ledus.S2	AUGUSTUS	stop_codon	4831644	4831646	.	-	0	transcript_id "Ledus.S2G063600.t1"; gene_id "Ledus.S2G063600"
Ledus.S2	AUGUSTUS	CDS	4831647	4831934	0.29	-	0	transcript_id "Ledus.S2G063600.t1"; gene_id "Ledus.S2G063600"
Ledus.S2	AUGUSTUS	exon	4831647	4831934	.	-	.	transcript_id "Ledus.S2G063600.t1"; gene_id "Ledus.S2G063600"
Ledus.S2	AUGUSTUS	start_codon	4831932	4831934	.	-	0	transcript_id "Ledus.S2G063600.t1"; gene_id "Ledus.S2G063600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7930.t1 is derived from g12601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7907802	7908002	.	-	.	Ledus.S5G070800
Ledus.S5	AUGUSTUS	transcript	7907802	7908002	.	-	.	transcript_id "Ledus.S5G070800.t1"; gene_id "Ledus.S5G070800"
Ledus.S5	AUGUSTUS	stop_codon	7907799	7907801	.	-	0	transcript_id "Ledus.S5G070800.t1"; gene_id "Ledus.S5G070800"
Ledus.S5	AUGUSTUS	CDS	7907802	7908002	0.48	-	0	transcript_id "Ledus.S5G070800.t1"; gene_id "Ledus.S5G070800"
Ledus.S5	AUGUSTUS	exon	7907802	7908002	.	-	.	transcript_id "Ledus.S5G070800.t1"; gene_id "Ledus.S5G070800"
Ledus.S5	AUGUSTUS	start_codon	7908000	7908002	.	-	0	transcript_id "Ledus.S5G070800.t1"; gene_id "Ledus.S5G070800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11905.t1 is derived from g5524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7666960	7667968	.	+	.	Ledus.S4G106100
Ledus.S4	AUGUSTUS	transcript	7666960	7667968	.	+	.	transcript_id "Ledus.S4G106100.t1"; gene_id "Ledus.S4G106100"
Ledus.S4	AUGUSTUS	start_codon	7666960	7666962	.	+	0	transcript_id "Ledus.S4G106100.t1"; gene_id "Ledus.S4G106100"
Ledus.S4	AUGUSTUS	CDS	7666960	7667317	0.45	+	0	transcript_id "Ledus.S4G106100.t1"; gene_id "Ledus.S4G106100"
Ledus.S4	AUGUSTUS	exon	7666960	7667317	.	+	.	transcript_id "Ledus.S4G106100.t1"; gene_id "Ledus.S4G106100"
Ledus.S4	AUGUSTUS	intron	7667318	7667786	.	+	.	transcript_id "Ledus.S4G106100.t1"; gene_id "Ledus.S4G106100"
Ledus.S4	AUGUSTUS	CDS	7667787	7667968	0.86	+	2	transcript_id "Ledus.S4G106100.t1"; gene_id "Ledus.S4G106100"
Ledus.S4	AUGUSTUS	exon	7667787	7667968	.	+	.	transcript_id "Ledus.S4G106100.t1"; gene_id "Ledus.S4G106100"
Ledus.S4	AUGUSTUS	stop_codon	7667969	7667971	.	+	0	transcript_id "Ledus.S4G106100.t1"; gene_id "Ledus.S4G106100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7592.t1 is derived from g12263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4267702	4271638	.	+	.	Ledus.S5G037000
Ledus.S5	AUGUSTUS	transcript	4267702	4271638	.	+	.	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	start_codon	4267702	4267704	.	+	0	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	CDS	4267702	4270591	0.56	+	0	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	exon	4267702	4270591	.	+	.	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	intron	4270592	4270743	.	+	.	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	CDS	4270744	4270799	0.62	+	2	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	exon	4270744	4270799	.	+	.	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	intron	4270800	4270896	.	+	.	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	CDS	4270897	4270971	1	+	0	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	exon	4270897	4270971	.	+	.	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	intron	4270972	4271260	.	+	.	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	CDS	4271261	4271313	1	+	0	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	exon	4271261	4271313	.	+	.	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	intron	4271314	4271392	.	+	.	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	CDS	4271393	4271448	1	+	1	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	exon	4271393	4271448	.	+	.	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	intron	4271449	4271534	.	+	.	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	CDS	4271535	4271638	1	+	2	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	exon	4271535	4271638	.	+	.	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
Ledus.S5	AUGUSTUS	stop_codon	4271639	4271641	.	+	0	transcript_id "Ledus.S5G037000.t1"; gene_id "Ledus.S5G037000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg841.t1 is derived from g7702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5625987	5627390	.	-	.	Ledus.S2G072300
Ledus.S2	AUGUSTUS	transcript	5625987	5627390	.	-	.	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	stop_codon	5625984	5625986	.	-	0	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	CDS	5625987	5626211	0.88	-	0	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	exon	5625987	5626211	.	-	.	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	intron	5626212	5626274	.	-	.	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	CDS	5626275	5626312	0.51	-	2	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	exon	5626275	5626312	.	-	.	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	intron	5626313	5626400	.	-	.	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	CDS	5626401	5626981	0.32	-	1	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	exon	5626401	5626981	.	-	.	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	intron	5626982	5627055	.	-	.	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	CDS	5627056	5627390	0.08	-	0	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	exon	5627056	5627390	.	-	.	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
Ledus.S2	AUGUSTUS	start_codon	5627388	5627390	.	-	0	transcript_id "Ledus.S2G072300.t1"; gene_id "Ledus.S2G072300"
# This transcript jg11978.t2 is derived from g5597.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11979.t1 is derived from g5598.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8252685	8255027	.	-	.	Ledus.S4G113500
Ledus.S4	AUGUSTUS	transcript	8252685	8255027	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	stop_codon	8252682	8252684	.	-	0	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	CDS	8252685	8252813	1	-	0	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	exon	8252685	8252813	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	intron	8252814	8252926	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	CDS	8252927	8253032	1	-	1	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	exon	8252927	8253032	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	intron	8253033	8253124	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	CDS	8253125	8253180	1	-	0	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	exon	8253125	8253180	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	intron	8253181	8253440	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	CDS	8253441	8253500	1	-	0	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	exon	8253441	8253500	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	intron	8253501	8253622	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	CDS	8253623	8253707	1	-	1	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	exon	8253623	8253707	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	intron	8253708	8253781	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	CDS	8253782	8253838	1	-	1	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	exon	8253782	8253838	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	intron	8253839	8254100	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	CDS	8254101	8254195	1	-	0	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	exon	8254101	8254195	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	intron	8254196	8254448	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	CDS	8254449	8254577	0.99	-	0	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	exon	8254449	8254577	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	intron	8254578	8254678	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	CDS	8254679	8254733	1	-	1	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	exon	8254679	8254733	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	intron	8254734	8254875	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	CDS	8254876	8255027	0.93	-	0	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	exon	8254876	8255027	.	-	.	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
Ledus.S4	AUGUSTUS	start_codon	8255025	8255027	.	-	0	transcript_id "Ledus.S4G113500.t1"; gene_id "Ledus.S4G113500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9224.t1 is derived from g10254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5487386	5487688	.	+	.	Ledus.S3G070100
Ledus.S3	AUGUSTUS	transcript	5487386	5487688	.	+	.	transcript_id "Ledus.S3G070100.t1"; gene_id "Ledus.S3G070100"
Ledus.S3	AUGUSTUS	start_codon	5487386	5487388	.	+	0	transcript_id "Ledus.S3G070100.t1"; gene_id "Ledus.S3G070100"
Ledus.S3	AUGUSTUS	CDS	5487386	5487688	0.83	+	0	transcript_id "Ledus.S3G070100.t1"; gene_id "Ledus.S3G070100"
Ledus.S3	AUGUSTUS	exon	5487386	5487688	.	+	.	transcript_id "Ledus.S3G070100.t1"; gene_id "Ledus.S3G070100"
Ledus.S3	AUGUSTUS	stop_codon	5487689	5487691	.	+	0	transcript_id "Ledus.S3G070100.t1"; gene_id "Ledus.S3G070100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3383.t1 is derived from g818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7978391	7981563	.	+	.	Ledus.S1G080400
Ledus.S1	AUGUSTUS	transcript	7978391	7981563	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	start_codon	7978391	7978393	.	+	0	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	CDS	7978391	7978433	0.99	+	0	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	exon	7978391	7978433	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	intron	7978434	7978656	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	CDS	7978657	7978768	1	+	2	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	exon	7978657	7978768	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	intron	7978769	7979026	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	CDS	7979027	7979162	1	+	1	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	exon	7979027	7979162	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	intron	7979163	7979246	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	CDS	7979247	7979300	1	+	0	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	exon	7979247	7979300	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	intron	7979301	7979394	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	CDS	7979395	7979486	1	+	0	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	exon	7979395	7979486	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	intron	7979487	7979661	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	CDS	7979662	7980176	0.48	+	1	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	exon	7979662	7980176	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	intron	7980177	7980251	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	CDS	7980252	7980348	0.42	+	2	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	exon	7980252	7980348	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	intron	7980349	7980843	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	CDS	7980844	7980899	0.58	+	1	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	exon	7980844	7980899	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	intron	7980900	7981022	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	CDS	7981023	7981144	1	+	2	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	exon	7981023	7981144	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	intron	7981145	7981247	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	CDS	7981248	7981348	1	+	0	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	exon	7981248	7981348	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	intron	7981349	7981430	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	CDS	7981431	7981563	1	+	1	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	exon	7981431	7981563	.	+	.	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
Ledus.S1	AUGUSTUS	stop_codon	7981564	7981566	.	+	0	transcript_id "Ledus.S1G080400.t1"; gene_id "Ledus.S1G080400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2354.t1 is derived from g9217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17407336	17408713	.	+	.	Ledus.S2G223600
Ledus.S2	AUGUSTUS	transcript	17407336	17408713	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	start_codon	17407336	17407338	.	+	0	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	CDS	17407336	17407534	0.41	+	0	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	exon	17407336	17407534	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	intron	17407535	17407611	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	CDS	17407612	17407640	0.77	+	2	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	exon	17407612	17407640	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	intron	17407641	17407748	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	CDS	17407749	17407905	0.75	+	0	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	exon	17407749	17407905	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	intron	17407906	17407996	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	CDS	17407997	17408067	0.81	+	2	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	exon	17407997	17408067	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	intron	17408068	17408159	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	CDS	17408160	17408241	0.68	+	0	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	exon	17408160	17408241	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	intron	17408242	17408365	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	CDS	17408366	17408466	0.34	+	2	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	exon	17408366	17408466	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	intron	17408467	17408659	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	CDS	17408660	17408713	0.92	+	0	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	exon	17408660	17408713	.	+	.	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
Ledus.S2	AUGUSTUS	stop_codon	17408714	17408716	.	+	0	transcript_id "Ledus.S2G223600.t1"; gene_id "Ledus.S2G223600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10003.t1 is derived from g11033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11806908	11810909	.	+	.	Ledus.S3G148000
Ledus.S3	AUGUSTUS	transcript	11806908	11810909	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	start_codon	11806908	11806910	.	+	0	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	CDS	11806908	11807207	0.56	+	0	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	exon	11806908	11807207	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	intron	11807208	11807359	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	CDS	11807360	11807523	1	+	0	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	exon	11807360	11807523	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	intron	11807524	11807650	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	CDS	11807651	11807779	1	+	1	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	exon	11807651	11807779	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	intron	11807780	11807960	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	CDS	11807961	11808102	1	+	1	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	exon	11807961	11808102	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	intron	11808103	11808298	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	CDS	11808299	11808360	1	+	0	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	exon	11808299	11808360	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	intron	11808361	11808439	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	CDS	11808440	11808662	1	+	1	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	exon	11808440	11808662	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	intron	11808663	11808851	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	CDS	11808852	11809673	1	+	0	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	exon	11808852	11809673	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	intron	11809674	11809772	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	CDS	11809773	11809880	1	+	0	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	exon	11809773	11809880	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	intron	11809881	11809964	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	CDS	11809965	11810214	1	+	0	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	exon	11809965	11810214	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	intron	11810215	11810305	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	CDS	11810306	11810558	1	+	2	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	exon	11810306	11810558	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	intron	11810559	11810678	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	CDS	11810679	11810765	1	+	1	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	exon	11810679	11810765	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	intron	11810766	11810863	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	CDS	11810864	11810909	1	+	1	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	exon	11810864	11810909	.	+	.	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
Ledus.S3	AUGUSTUS	stop_codon	11810910	11810912	.	+	0	transcript_id "Ledus.S3G148000.t1"; gene_id "Ledus.S3G148000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9579.t1 is derived from g10609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7924169	7924585	.	+	.	Ledus.S3G105600
Ledus.S3	AUGUSTUS	transcript	7924169	7924585	.	+	.	transcript_id "Ledus.S3G105600.t1"; gene_id "Ledus.S3G105600"
Ledus.S3	AUGUSTUS	start_codon	7924169	7924171	.	+	0	transcript_id "Ledus.S3G105600.t1"; gene_id "Ledus.S3G105600"
Ledus.S3	AUGUSTUS	CDS	7924169	7924585	0.72	+	0	transcript_id "Ledus.S3G105600.t1"; gene_id "Ledus.S3G105600"
Ledus.S3	AUGUSTUS	exon	7924169	7924585	.	+	.	transcript_id "Ledus.S3G105600.t1"; gene_id "Ledus.S3G105600"
Ledus.S3	AUGUSTUS	stop_codon	7924586	7924588	.	+	0	transcript_id "Ledus.S3G105600.t1"; gene_id "Ledus.S3G105600"
# This transcript jg10668.t2 is derived from g11698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10669.t1 is derived from g11699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16996743	16998088	.	-	.	Ledus.S3G214600
Ledus.S3	AUGUSTUS	transcript	16996743	16998088	.	-	.	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	stop_codon	16996740	16996742	.	-	0	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	CDS	16996743	16997042	0.99	-	0	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	exon	16996743	16997042	.	-	.	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	intron	16997043	16997139	.	-	.	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	CDS	16997140	16997222	1	-	2	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	exon	16997140	16997222	.	-	.	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	intron	16997223	16997284	.	-	.	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	CDS	16997285	16997406	1	-	1	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	exon	16997285	16997406	.	-	.	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	intron	16997407	16997478	.	-	.	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	CDS	16997479	16997744	0.63	-	0	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	exon	16997479	16997744	.	-	.	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	intron	16997745	16997824	.	-	.	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	CDS	16997825	16998088	0.8	-	0	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	exon	16997825	16998088	.	-	.	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
Ledus.S3	AUGUSTUS	start_codon	16998086	16998088	.	-	0	transcript_id "Ledus.S3G214600.t1"; gene_id "Ledus.S3G214600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg43.t1 is derived from g9456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	41669	44895	.	-	.	Ledus.C8G000300
Ledus.C8	AUGUSTUS	transcript	41669	44895	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	stop_codon	41666	41668	.	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	41669	41851	1	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	41669	41851	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	41852	41935	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	41936	42019	1	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	41936	42019	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	42020	42115	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	42116	42169	1	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	42116	42169	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	42170	42289	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	42290	42337	1	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	42290	42337	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	42338	42460	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	42461	42543	1	-	2	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	42461	42543	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	42544	42641	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	42642	42792	0.92	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	42642	42792	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	42793	42898	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	42899	43036	1	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	42899	43036	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	43037	43186	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	43187	43318	1	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	43187	43318	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	43319	43410	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	43411	43616	1	-	2	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	43411	43616	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	43617	43716	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	43717	43828	1	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	43717	43828	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	43829	43929	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	43930	43989	1	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	43930	43989	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	43990	44108	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	44109	44207	1	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	44109	44207	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	44208	44357	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	44358	44413	1	-	2	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	44358	44413	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	intron	44414	44837	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	CDS	44838	44895	1	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	exon	44838	44895	.	-	.	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
Ledus.C8	AUGUSTUS	start_codon	44893	44895	.	-	0	transcript_id "Ledus.C8G000300.t1"; gene_id "Ledus.C8G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7428.t1 is derived from g12099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2450066	2451616	.	-	.	Ledus.S5G020600
Ledus.S5	AUGUSTUS	transcript	2450066	2451616	.	-	.	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	stop_codon	2450063	2450065	.	-	0	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	CDS	2450066	2450444	0.57	-	1	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	exon	2450066	2450444	.	-	.	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	intron	2450445	2450841	.	-	.	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	CDS	2450842	2450946	1	-	1	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	exon	2450842	2450946	.	-	.	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	intron	2450947	2451161	.	-	.	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	CDS	2451162	2451283	1	-	0	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	exon	2451162	2451283	.	-	.	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	intron	2451284	2451415	.	-	.	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	CDS	2451416	2451616	0.4	-	0	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	exon	2451416	2451616	.	-	.	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
Ledus.S5	AUGUSTUS	start_codon	2451614	2451616	.	-	0	transcript_id "Ledus.S5G020600.t1"; gene_id "Ledus.S5G020600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11009.t1 is derived from g4627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1085456	1086690	.	-	.	Ledus.S4G016500
Ledus.S4	AUGUSTUS	transcript	1085456	1086690	.	-	.	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	stop_codon	1085453	1085455	.	-	0	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	CDS	1085456	1085665	1	-	0	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	exon	1085456	1085665	.	-	.	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	intron	1085666	1085759	.	-	.	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	CDS	1085760	1085852	1	-	0	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	exon	1085760	1085852	.	-	.	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	intron	1085853	1085947	.	-	.	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	CDS	1085948	1086318	1	-	2	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	exon	1085948	1086318	.	-	.	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	intron	1086319	1086449	.	-	.	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	CDS	1086450	1086690	1	-	0	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	exon	1086450	1086690	.	-	.	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
Ledus.S4	AUGUSTUS	start_codon	1086688	1086690	.	-	0	transcript_id "Ledus.S4G016500.t1"; gene_id "Ledus.S4G016500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10092.t1 is derived from g11122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12604801	12605961	.	-	.	Ledus.S3G156900
Ledus.S3	AUGUSTUS	transcript	12604801	12605961	.	-	.	transcript_id "Ledus.S3G156900.t1"; gene_id "Ledus.S3G156900"
Ledus.S3	AUGUSTUS	stop_codon	12604798	12604800	.	-	0	transcript_id "Ledus.S3G156900.t1"; gene_id "Ledus.S3G156900"
Ledus.S3	AUGUSTUS	CDS	12604801	12605064	1	-	0	transcript_id "Ledus.S3G156900.t1"; gene_id "Ledus.S3G156900"
Ledus.S3	AUGUSTUS	exon	12604801	12605064	.	-	.	transcript_id "Ledus.S3G156900.t1"; gene_id "Ledus.S3G156900"
Ledus.S3	AUGUSTUS	intron	12605065	12605147	.	-	.	transcript_id "Ledus.S3G156900.t1"; gene_id "Ledus.S3G156900"
Ledus.S3	AUGUSTUS	CDS	12605148	12605294	1	-	0	transcript_id "Ledus.S3G156900.t1"; gene_id "Ledus.S3G156900"
Ledus.S3	AUGUSTUS	exon	12605148	12605294	.	-	.	transcript_id "Ledus.S3G156900.t1"; gene_id "Ledus.S3G156900"
Ledus.S3	AUGUSTUS	intron	12605295	12605394	.	-	.	transcript_id "Ledus.S3G156900.t1"; gene_id "Ledus.S3G156900"
Ledus.S3	AUGUSTUS	CDS	12605395	12605961	0.99	-	0	transcript_id "Ledus.S3G156900.t1"; gene_id "Ledus.S3G156900"
Ledus.S3	AUGUSTUS	exon	12605395	12605961	.	-	.	transcript_id "Ledus.S3G156900.t1"; gene_id "Ledus.S3G156900"
Ledus.S3	AUGUSTUS	start_codon	12605959	12605961	.	-	0	transcript_id "Ledus.S3G156900.t1"; gene_id "Ledus.S3G156900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg11860.t1 is derived from g5479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7401414	7404594	.	+	.	Ledus.S4G101600
Ledus.S4	AUGUSTUS	transcript	7402039	7403185	.	+	.	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	start_codon	7402039	7402041	.	+	0	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7402039	7402104	0.97	+	0	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7402039	7402104	.	+	.	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7402105	7402509	.	+	.	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7402510	7402576	1	+	0	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7402510	7402576	.	+	.	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7402577	7402715	.	+	.	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7402716	7402807	1	+	2	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7402716	7402807	.	+	.	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7402808	7402936	.	+	.	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7402937	7402999	1	+	0	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7402937	7402999	.	+	.	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7403000	7403092	.	+	.	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7403093	7403185	0.34	+	0	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7403093	7403185	.	+	.	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	stop_codon	7403186	7403188	.	+	0	transcript_id "Ledus.S4G101600.t1"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	transcript	7401414	7404594	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	start_codon	7401414	7401416	.	+	0	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7401414	7401599	0.87	+	0	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7401414	7401599	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7401600	7401719	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7401720	7401864	0.81	+	0	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7401720	7401864	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7401865	7401968	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7401969	7402104	0.96	+	2	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7401969	7402104	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7402105	7402291	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7402292	7402331	0.7	+	1	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7402292	7402331	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7402332	7402509	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7402510	7402576	1	+	0	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7402510	7402576	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7402577	7402715	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7402716	7402807	1	+	2	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7402716	7402807	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7402808	7402936	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7402937	7402999	1	+	0	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7402937	7402999	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7403000	7403092	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7403093	7403163	0.95	+	0	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7403093	7403163	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7403164	7403260	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7403261	7403313	1	+	1	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7403261	7403313	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7403314	7403509	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7403510	7403650	0.95	+	2	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7403510	7403650	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7403651	7403774	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7403775	7403935	0.67	+	2	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7403775	7403935	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7403936	7404068	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7404069	7404197	0.96	+	0	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7404069	7404197	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7404198	7404294	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7404295	7404417	1	+	0	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7404295	7404417	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7404418	7404498	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7404499	7404594	1	+	0	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7404499	7404594	.	+	.	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	stop_codon	7404595	7404597	.	+	0	transcript_id "Ledus.S4G101600.t2"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	transcript	7403252	7404594	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	start_codon	7403252	7403254	.	+	0	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7403252	7403260	0.81	+	0	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7403252	7403260	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7403261	7403509	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7403510	7403556	0.73	+	0	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7403510	7403556	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7403557	7403638	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7403639	7403650	0.82	+	1	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7403639	7403650	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7403651	7403774	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7403775	7403877	0.83	+	1	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7403775	7403877	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7403878	7404068	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7404069	7404197	0.99	+	0	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7404069	7404197	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7404198	7404294	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7404295	7404417	1	+	0	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7404295	7404417	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7404418	7404498	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7404499	7404594	1	+	0	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7404499	7404594	.	+	.	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	stop_codon	7404595	7404597	.	+	0	transcript_id "Ledus.S4G101600.t3"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	transcript	7401414	7403185	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	start_codon	7401414	7401416	.	+	0	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7401414	7401599	0.94	+	0	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7401414	7401599	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7401600	7401719	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7401720	7401864	0.82	+	0	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7401720	7401864	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7401865	7401968	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7401969	7402104	0.97	+	2	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7401969	7402104	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7402105	7402291	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7402292	7402331	0.71	+	1	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7402292	7402331	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7402332	7402509	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7402510	7402576	1	+	0	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7402510	7402576	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7402577	7402715	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7402716	7402807	1	+	2	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7402716	7402807	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7402808	7402936	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7402937	7402999	1	+	0	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7402937	7402999	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	intron	7403000	7403092	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	CDS	7403093	7403185	0.41	+	0	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	exon	7403093	7403185	.	+	.	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
Ledus.S4	AUGUSTUS	stop_codon	7403186	7403188	.	+	0	transcript_id "Ledus.S4G101600.t4"; gene_id "Ledus.S4G101600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4898.t1 is derived from g2336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20567819	20568446	.	-	.	Ledus.S1G231900
Ledus.S1	AUGUSTUS	transcript	20567819	20568446	.	-	.	transcript_id "Ledus.S1G231900.t1"; gene_id "Ledus.S1G231900"
Ledus.S1	AUGUSTUS	stop_codon	20567816	20567818	.	-	0	transcript_id "Ledus.S1G231900.t1"; gene_id "Ledus.S1G231900"
Ledus.S1	AUGUSTUS	CDS	20567819	20568142	0.91	-	0	transcript_id "Ledus.S1G231900.t1"; gene_id "Ledus.S1G231900"
Ledus.S1	AUGUSTUS	exon	20567819	20568142	.	-	.	transcript_id "Ledus.S1G231900.t1"; gene_id "Ledus.S1G231900"
Ledus.S1	AUGUSTUS	intron	20568143	20568242	.	-	.	transcript_id "Ledus.S1G231900.t1"; gene_id "Ledus.S1G231900"
Ledus.S1	AUGUSTUS	CDS	20568243	20568446	0.79	-	0	transcript_id "Ledus.S1G231900.t1"; gene_id "Ledus.S1G231900"
Ledus.S1	AUGUSTUS	exon	20568243	20568446	.	-	.	transcript_id "Ledus.S1G231900.t1"; gene_id "Ledus.S1G231900"
Ledus.S1	AUGUSTUS	start_codon	20568444	20568446	.	-	0	transcript_id "Ledus.S1G231900.t1"; gene_id "Ledus.S1G231900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg539.t1 is derived from g7400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3115469	3119690	.	-	.	Ledus.S2G042100
Ledus.S2	AUGUSTUS	transcript	3115469	3119690	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	stop_codon	3115466	3115468	.	-	0	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3115469	3115789	0.96	-	0	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3115469	3115789	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	intron	3115790	3115868	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3115869	3116048	1	-	0	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3115869	3116048	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	intron	3116049	3116199	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3116200	3116317	1	-	1	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3116200	3116317	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	intron	3116318	3116393	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3116394	3116674	1	-	0	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3116394	3116674	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	intron	3116675	3116901	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3116902	3117083	1	-	2	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3116902	3117083	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	intron	3117084	3117179	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3117180	3117436	0.96	-	1	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3117180	3117436	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	intron	3117437	3117591	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3117592	3117662	1	-	0	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3117592	3117662	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	intron	3117663	3117786	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3117787	3118277	0.99	-	2	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3117787	3118277	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	intron	3118278	3118419	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3118420	3118565	1	-	1	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3118420	3118565	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	intron	3118566	3118745	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3118746	3118863	1	-	2	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3118746	3118863	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	intron	3118864	3118975	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3118976	3119058	1	-	1	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3118976	3119058	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	intron	3119059	3119170	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3119171	3119281	1	-	1	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3119171	3119281	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	intron	3119282	3119490	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	CDS	3119491	3119690	0.43	-	0	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	exon	3119491	3119690	.	-	.	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
Ledus.S2	AUGUSTUS	start_codon	3119688	3119690	.	-	0	transcript_id "Ledus.S2G042100.t1"; gene_id "Ledus.S2G042100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12241.t1 is derived from g5861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10607764	10610829	.	-	.	Ledus.S4G139700
Ledus.S4	AUGUSTUS	transcript	10607764	10610829	.	-	.	transcript_id "Ledus.S4G139700.t1"; gene_id "Ledus.S4G139700"
Ledus.S4	AUGUSTUS	stop_codon	10607761	10607763	.	-	0	transcript_id "Ledus.S4G139700.t1"; gene_id "Ledus.S4G139700"
Ledus.S4	AUGUSTUS	CDS	10607764	10610829	0.78	-	0	transcript_id "Ledus.S4G139700.t1"; gene_id "Ledus.S4G139700"
Ledus.S4	AUGUSTUS	exon	10607764	10610829	.	-	.	transcript_id "Ledus.S4G139700.t1"; gene_id "Ledus.S4G139700"
Ledus.S4	AUGUSTUS	start_codon	10610827	10610829	.	-	0	transcript_id "Ledus.S4G139700.t1"; gene_id "Ledus.S4G139700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5784.t1 is derived from g3226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26749911	26752059	.	-	.	Ledus.S1G320500
Ledus.S1	AUGUSTUS	transcript	26749911	26752059	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	stop_codon	26749908	26749910	.	-	0	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	CDS	26749911	26749983	0.67	-	1	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	exon	26749911	26749983	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	intron	26749984	26750155	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	CDS	26750156	26750235	0.75	-	0	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	exon	26750156	26750235	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	intron	26750236	26750425	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	CDS	26750426	26750639	0.5	-	1	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	exon	26750426	26750639	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	intron	26750640	26750879	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	CDS	26750880	26751011	0.52	-	1	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	exon	26750880	26751011	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	intron	26751012	26751079	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	CDS	26751080	26751213	0.62	-	0	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	exon	26751080	26751213	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	intron	26751214	26751466	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	CDS	26751467	26751612	0.41	-	2	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	exon	26751467	26751612	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	intron	26751613	26751731	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	CDS	26751732	26752059	0.4	-	0	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	exon	26751732	26752059	.	-	.	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
Ledus.S1	AUGUSTUS	start_codon	26752057	26752059	.	-	0	transcript_id "Ledus.S1G320500.t1"; gene_id "Ledus.S1G320500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9506.t1 is derived from g10536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7503137	7503702	.	+	.	Ledus.S3G098300
Ledus.S3	AUGUSTUS	transcript	7503137	7503702	.	+	.	transcript_id "Ledus.S3G098300.t1"; gene_id "Ledus.S3G098300"
Ledus.S3	AUGUSTUS	start_codon	7503137	7503139	.	+	0	transcript_id "Ledus.S3G098300.t1"; gene_id "Ledus.S3G098300"
Ledus.S3	AUGUSTUS	CDS	7503137	7503256	0.59	+	0	transcript_id "Ledus.S3G098300.t1"; gene_id "Ledus.S3G098300"
Ledus.S3	AUGUSTUS	exon	7503137	7503256	.	+	.	transcript_id "Ledus.S3G098300.t1"; gene_id "Ledus.S3G098300"
Ledus.S3	AUGUSTUS	intron	7503257	7503380	.	+	.	transcript_id "Ledus.S3G098300.t1"; gene_id "Ledus.S3G098300"
Ledus.S3	AUGUSTUS	CDS	7503381	7503466	0.71	+	0	transcript_id "Ledus.S3G098300.t1"; gene_id "Ledus.S3G098300"
Ledus.S3	AUGUSTUS	exon	7503381	7503466	.	+	.	transcript_id "Ledus.S3G098300.t1"; gene_id "Ledus.S3G098300"
Ledus.S3	AUGUSTUS	intron	7503467	7503602	.	+	.	transcript_id "Ledus.S3G098300.t1"; gene_id "Ledus.S3G098300"
Ledus.S3	AUGUSTUS	CDS	7503603	7503702	0.63	+	1	transcript_id "Ledus.S3G098300.t1"; gene_id "Ledus.S3G098300"
Ledus.S3	AUGUSTUS	exon	7503603	7503702	.	+	.	transcript_id "Ledus.S3G098300.t1"; gene_id "Ledus.S3G098300"
Ledus.S3	AUGUSTUS	stop_codon	7503703	7503705	.	+	0	transcript_id "Ledus.S3G098300.t1"; gene_id "Ledus.S3G098300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6492.t1 is derived from g3935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31607947	31609883	.	-	.	Ledus.S1G391300
Ledus.S1	AUGUSTUS	transcript	31607947	31609883	.	-	.	transcript_id "Ledus.S1G391300.t1"; gene_id "Ledus.S1G391300"
Ledus.S1	AUGUSTUS	stop_codon	31607944	31607946	.	-	0	transcript_id "Ledus.S1G391300.t1"; gene_id "Ledus.S1G391300"
Ledus.S1	AUGUSTUS	CDS	31607947	31608034	0.99	-	1	transcript_id "Ledus.S1G391300.t1"; gene_id "Ledus.S1G391300"
Ledus.S1	AUGUSTUS	exon	31607947	31608034	.	-	.	transcript_id "Ledus.S1G391300.t1"; gene_id "Ledus.S1G391300"
Ledus.S1	AUGUSTUS	intron	31608035	31608434	.	-	.	transcript_id "Ledus.S1G391300.t1"; gene_id "Ledus.S1G391300"
Ledus.S1	AUGUSTUS	CDS	31608435	31608560	0.52	-	1	transcript_id "Ledus.S1G391300.t1"; gene_id "Ledus.S1G391300"
Ledus.S1	AUGUSTUS	exon	31608435	31608560	.	-	.	transcript_id "Ledus.S1G391300.t1"; gene_id "Ledus.S1G391300"
Ledus.S1	AUGUSTUS	intron	31608561	31608732	.	-	.	transcript_id "Ledus.S1G391300.t1"; gene_id "Ledus.S1G391300"
Ledus.S1	AUGUSTUS	CDS	31608733	31609883	0.44	-	0	transcript_id "Ledus.S1G391300.t1"; gene_id "Ledus.S1G391300"
Ledus.S1	AUGUSTUS	exon	31608733	31609883	.	-	.	transcript_id "Ledus.S1G391300.t1"; gene_id "Ledus.S1G391300"
Ledus.S1	AUGUSTUS	start_codon	31609881	31609883	.	-	0	transcript_id "Ledus.S1G391300.t1"; gene_id "Ledus.S1G391300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11198.t1 is derived from g4816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2676278	2679378	.	-	.	Ledus.S4G035400
Ledus.S4	AUGUSTUS	transcript	2676278	2679378	.	-	.	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	stop_codon	2676275	2676277	.	-	0	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	CDS	2676278	2676829	1	-	0	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	exon	2676278	2676829	.	-	.	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	intron	2676830	2676914	.	-	.	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	CDS	2676915	2677612	1	-	2	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	exon	2676915	2677612	.	-	.	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	intron	2677613	2677701	.	-	.	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	CDS	2677702	2677986	1	-	2	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	exon	2677702	2677986	.	-	.	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	intron	2677987	2678080	.	-	.	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	CDS	2678081	2678330	1	-	0	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	exon	2678081	2678330	.	-	.	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	intron	2678331	2678403	.	-	.	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	CDS	2678404	2679378	0.71	-	0	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	exon	2678404	2679378	.	-	.	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
Ledus.S4	AUGUSTUS	start_codon	2679376	2679378	.	-	0	transcript_id "Ledus.S4G035400.t1"; gene_id "Ledus.S4G035400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9931.t1 is derived from g10961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11262113	11262796	.	+	.	Ledus.S3G140800
Ledus.S3	AUGUSTUS	transcript	11262113	11262796	.	+	.	transcript_id "Ledus.S3G140800.t1"; gene_id "Ledus.S3G140800"
Ledus.S3	AUGUSTUS	start_codon	11262113	11262115	.	+	0	transcript_id "Ledus.S3G140800.t1"; gene_id "Ledus.S3G140800"
Ledus.S3	AUGUSTUS	CDS	11262113	11262796	0.94	+	0	transcript_id "Ledus.S3G140800.t1"; gene_id "Ledus.S3G140800"
Ledus.S3	AUGUSTUS	exon	11262113	11262796	.	+	.	transcript_id "Ledus.S3G140800.t1"; gene_id "Ledus.S3G140800"
Ledus.S3	AUGUSTUS	stop_codon	11262797	11262799	.	+	0	transcript_id "Ledus.S3G140800.t1"; gene_id "Ledus.S3G140800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4312.t1 is derived from g1748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16157668	16158218	.	-	.	Ledus.S1G173300
Ledus.S1	AUGUSTUS	transcript	16157668	16158218	.	-	.	transcript_id "Ledus.S1G173300.t1"; gene_id "Ledus.S1G173300"
Ledus.S1	AUGUSTUS	stop_codon	16157665	16157667	.	-	0	transcript_id "Ledus.S1G173300.t1"; gene_id "Ledus.S1G173300"
Ledus.S1	AUGUSTUS	CDS	16157668	16157781	0.62	-	0	transcript_id "Ledus.S1G173300.t1"; gene_id "Ledus.S1G173300"
Ledus.S1	AUGUSTUS	exon	16157668	16157781	.	-	.	transcript_id "Ledus.S1G173300.t1"; gene_id "Ledus.S1G173300"
Ledus.S1	AUGUSTUS	intron	16157782	16157900	.	-	.	transcript_id "Ledus.S1G173300.t1"; gene_id "Ledus.S1G173300"
Ledus.S1	AUGUSTUS	CDS	16157901	16158218	0.42	-	0	transcript_id "Ledus.S1G173300.t1"; gene_id "Ledus.S1G173300"
Ledus.S1	AUGUSTUS	exon	16157901	16158218	.	-	.	transcript_id "Ledus.S1G173300.t1"; gene_id "Ledus.S1G173300"
Ledus.S1	AUGUSTUS	start_codon	16158216	16158218	.	-	0	transcript_id "Ledus.S1G173300.t1"; gene_id "Ledus.S1G173300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4788.t1 is derived from g2226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19778618	19784404	.	-	.	Ledus.S1G220900
Ledus.S1	AUGUSTUS	transcript	19778618	19784404	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	stop_codon	19778615	19778617	.	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19778618	19778949	0.91	-	2	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19778618	19778949	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19778950	19779051	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19779052	19779124	0.44	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19779052	19779124	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19779125	19779312	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19779313	19779384	0.48	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19779313	19779384	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19779385	19779521	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19779522	19779662	1	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19779522	19779662	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19779663	19779854	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19779855	19779960	1	-	1	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19779855	19779960	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19779961	19780106	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19780107	19780245	0.62	-	2	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19780107	19780245	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19780246	19780438	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19780439	19780571	0.99	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19780439	19780571	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19780572	19780715	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19780716	19780833	1	-	1	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19780716	19780833	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19780834	19780918	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19780919	19781154	0.94	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19780919	19781154	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19781155	19781270	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19781271	19781435	1	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19781271	19781435	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19781436	19781626	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19781627	19781836	1	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19781627	19781836	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19781837	19781966	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19781967	19782041	0.95	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19781967	19782041	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19782042	19782170	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19782171	19782299	0.88	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19782171	19782299	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19782300	19782429	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19782430	19782504	1	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19782430	19782504	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19782505	19782590	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19782591	19782956	1	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19782591	19782956	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19782957	19783042	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19783043	19783171	1	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19783043	19783171	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19783172	19783370	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19783371	19783466	1	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19783371	19783466	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19783467	19783556	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19783557	19783714	1	-	2	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19783557	19783714	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19783715	19783832	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19783833	19783988	0.99	-	2	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19783833	19783988	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	intron	19783989	19784226	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	CDS	19784227	19784404	0.55	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	exon	19784227	19784404	.	-	.	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
Ledus.S1	AUGUSTUS	start_codon	19784402	19784404	.	-	0	transcript_id "Ledus.S1G220900.t1"; gene_id "Ledus.S1G220900"
# This transcript jg7063.t2 is derived from g6594.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7064.t1 is derived from g6595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1162081	1164500	.	+	.	Ledus.C7G012500
Ledus.C7	AUGUSTUS	transcript	1162081	1164500	.	+	.	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	start_codon	1162081	1162083	.	+	0	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	CDS	1162081	1162299	0.73	+	0	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	exon	1162081	1162299	.	+	.	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	intron	1162300	1162379	.	+	.	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	CDS	1162380	1162491	0.48	+	0	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	exon	1162380	1162491	.	+	.	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	intron	1162492	1162572	.	+	.	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	CDS	1162573	1163783	0.45	+	2	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	exon	1162573	1163783	.	+	.	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	intron	1163784	1163867	.	+	.	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	CDS	1163868	1164005	1	+	0	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	exon	1163868	1164005	.	+	.	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	intron	1164006	1164084	.	+	.	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	CDS	1164085	1164256	1	+	0	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	exon	1164085	1164256	.	+	.	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	intron	1164257	1164354	.	+	.	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	CDS	1164355	1164500	1	+	2	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	exon	1164355	1164500	.	+	.	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
Ledus.C7	AUGUSTUS	stop_codon	1164501	1164503	.	+	0	transcript_id "Ledus.C7G012500.t1"; gene_id "Ledus.C7G012500"
# This transcript jg3084.t2 is derived from g519.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3085.t1 is derived from g520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5797456	5798664	.	+	.	Ledus.S1G050600
Ledus.S1	AUGUSTUS	transcript	5797456	5798664	.	+	.	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	start_codon	5797456	5797458	.	+	0	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	CDS	5797456	5797633	1	+	0	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	exon	5797456	5797633	.	+	.	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	intron	5797634	5797784	.	+	.	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	CDS	5797785	5797833	1	+	2	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	exon	5797785	5797833	.	+	.	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	intron	5797834	5798050	.	+	.	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	CDS	5798051	5798210	0.98	+	1	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	exon	5798051	5798210	.	+	.	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	intron	5798211	5798327	.	+	.	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	CDS	5798328	5798417	0.94	+	0	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	exon	5798328	5798417	.	+	.	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	intron	5798418	5798562	.	+	.	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	CDS	5798563	5798664	0.75	+	0	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	exon	5798563	5798664	.	+	.	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
Ledus.S1	AUGUSTUS	stop_codon	5798665	5798667	.	+	0	transcript_id "Ledus.S1G050600.t1"; gene_id "Ledus.S1G050600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11460.t1 is derived from g5078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4419752	4424293	.	+	.	Ledus.S4G061600
Ledus.S4	AUGUSTUS	transcript	4419752	4424293	.	+	.	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	start_codon	4419752	4419754	.	+	0	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	CDS	4419752	4422108	0.81	+	0	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	exon	4419752	4422108	.	+	.	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	intron	4422109	4422234	.	+	.	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	CDS	4422235	4423593	1	+	1	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	exon	4422235	4423593	.	+	.	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	intron	4423594	4423723	.	+	.	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	CDS	4423724	4423753	0.88	+	1	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	exon	4423724	4423753	.	+	.	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	intron	4423754	4423842	.	+	.	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	CDS	4423843	4423901	0.76	+	1	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	exon	4423843	4423901	.	+	.	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	intron	4423902	4424089	.	+	.	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	CDS	4424090	4424191	1	+	2	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	exon	4424090	4424191	.	+	.	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	intron	4424192	4424276	.	+	.	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	CDS	4424277	4424293	1	+	2	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	exon	4424277	4424293	.	+	.	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
Ledus.S4	AUGUSTUS	stop_codon	4424294	4424296	.	+	0	transcript_id "Ledus.S4G061600.t1"; gene_id "Ledus.S4G061600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10938.t1 is derived from g4556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	728710	732005	.	-	.	Ledus.S4G009400
Ledus.S4	AUGUSTUS	transcript	728710	732005	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	stop_codon	728707	728709	.	-	0	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	CDS	728710	728859	0.52	-	0	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	exon	728710	728859	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	intron	728860	729153	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	CDS	729154	729255	0.94	-	0	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	exon	729154	729255	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	intron	729256	729411	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	CDS	729412	729545	0.3	-	2	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	exon	729412	729545	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	intron	729546	729698	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	CDS	729699	730013	0.98	-	2	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	exon	729699	730013	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	intron	730014	730083	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	CDS	730084	730453	1	-	0	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	exon	730084	730453	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	intron	730454	730533	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	CDS	730534	730624	0.99	-	1	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	exon	730534	730624	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	intron	730625	730698	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	CDS	730699	730886	0.93	-	0	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	exon	730699	730886	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	intron	730887	731078	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	CDS	731079	731154	0.86	-	1	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	exon	731079	731154	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	intron	731155	731238	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	CDS	731239	731333	0.85	-	0	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	exon	731239	731333	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	intron	731334	731409	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	CDS	731410	731571	0.55	-	0	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	exon	731410	731571	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	intron	731572	731646	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	CDS	731647	731802	0.59	-	0	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	exon	731647	731802	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	intron	731803	731885	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	CDS	731886	732005	0.78	-	0	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	exon	731886	732005	.	-	.	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
Ledus.S4	AUGUSTUS	start_codon	732003	732005	.	-	0	transcript_id "Ledus.S4G009400.t1"; gene_id "Ledus.S4G009400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1417.t1 is derived from g8278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9964387	9965154	.	+	.	Ledus.S2G129900
Ledus.S2	AUGUSTUS	transcript	9964387	9965154	.	+	.	transcript_id "Ledus.S2G129900.t1"; gene_id "Ledus.S2G129900"
Ledus.S2	AUGUSTUS	start_codon	9964387	9964389	.	+	0	transcript_id "Ledus.S2G129900.t1"; gene_id "Ledus.S2G129900"
Ledus.S2	AUGUSTUS	CDS	9964387	9965154	0.9	+	0	transcript_id "Ledus.S2G129900.t1"; gene_id "Ledus.S2G129900"
Ledus.S2	AUGUSTUS	exon	9964387	9965154	.	+	.	transcript_id "Ledus.S2G129900.t1"; gene_id "Ledus.S2G129900"
Ledus.S2	AUGUSTUS	stop_codon	9965155	9965157	.	+	0	transcript_id "Ledus.S2G129900.t1"; gene_id "Ledus.S2G129900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10399.t1 is derived from g11429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14799744	14800166	.	-	.	Ledus.S3G187600
Ledus.S3	AUGUSTUS	transcript	14799744	14800166	.	-	.	transcript_id "Ledus.S3G187600.t1"; gene_id "Ledus.S3G187600"
Ledus.S3	AUGUSTUS	stop_codon	14799741	14799743	.	-	0	transcript_id "Ledus.S3G187600.t1"; gene_id "Ledus.S3G187600"
Ledus.S3	AUGUSTUS	CDS	14799744	14800166	1	-	0	transcript_id "Ledus.S3G187600.t1"; gene_id "Ledus.S3G187600"
Ledus.S3	AUGUSTUS	exon	14799744	14800166	.	-	.	transcript_id "Ledus.S3G187600.t1"; gene_id "Ledus.S3G187600"
Ledus.S3	AUGUSTUS	start_codon	14800164	14800166	.	-	0	transcript_id "Ledus.S3G187600.t1"; gene_id "Ledus.S3G187600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11825.t1 is derived from g5444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7036964	7037161	.	+	.	Ledus.S4G098100
Ledus.S4	AUGUSTUS	transcript	7036964	7037161	.	+	.	transcript_id "Ledus.S4G098100.t1"; gene_id "Ledus.S4G098100"
Ledus.S4	AUGUSTUS	start_codon	7036964	7036966	.	+	0	transcript_id "Ledus.S4G098100.t1"; gene_id "Ledus.S4G098100"
Ledus.S4	AUGUSTUS	CDS	7036964	7037161	0.62	+	0	transcript_id "Ledus.S4G098100.t1"; gene_id "Ledus.S4G098100"
Ledus.S4	AUGUSTUS	exon	7036964	7037161	.	+	.	transcript_id "Ledus.S4G098100.t1"; gene_id "Ledus.S4G098100"
Ledus.S4	AUGUSTUS	stop_codon	7037162	7037164	.	+	0	transcript_id "Ledus.S4G098100.t1"; gene_id "Ledus.S4G098100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7798.t1 is derived from g12469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6814121	6814904	.	+	.	Ledus.S5G057600
Ledus.S5	AUGUSTUS	transcript	6814121	6814904	.	+	.	transcript_id "Ledus.S5G057600.t1"; gene_id "Ledus.S5G057600"
Ledus.S5	AUGUSTUS	start_codon	6814121	6814123	.	+	0	transcript_id "Ledus.S5G057600.t1"; gene_id "Ledus.S5G057600"
Ledus.S5	AUGUSTUS	CDS	6814121	6814251	0.76	+	0	transcript_id "Ledus.S5G057600.t1"; gene_id "Ledus.S5G057600"
Ledus.S5	AUGUSTUS	exon	6814121	6814251	.	+	.	transcript_id "Ledus.S5G057600.t1"; gene_id "Ledus.S5G057600"
Ledus.S5	AUGUSTUS	intron	6814252	6814390	.	+	.	transcript_id "Ledus.S5G057600.t1"; gene_id "Ledus.S5G057600"
Ledus.S5	AUGUSTUS	CDS	6814391	6814904	0.55	+	1	transcript_id "Ledus.S5G057600.t1"; gene_id "Ledus.S5G057600"
Ledus.S5	AUGUSTUS	exon	6814391	6814904	.	+	.	transcript_id "Ledus.S5G057600.t1"; gene_id "Ledus.S5G057600"
Ledus.S5	AUGUSTUS	stop_codon	6814905	6814907	.	+	0	transcript_id "Ledus.S5G057600.t1"; gene_id "Ledus.S5G057600"
# This transcript jg9813.t1 is derived from g10842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10082058	10082906	.	-	.	Ledus.S3G128900
Ledus.S3	AUGUSTUS	transcript	10082058	10082906	.	-	.	transcript_id "Ledus.S3G128900.t1"; gene_id "Ledus.S3G128900"
Ledus.S3	AUGUSTUS	stop_codon	10082055	10082057	.	-	0	transcript_id "Ledus.S3G128900.t1"; gene_id "Ledus.S3G128900"
Ledus.S3	AUGUSTUS	CDS	10082058	10082906	0.49	-	0	transcript_id "Ledus.S3G128900.t1"; gene_id "Ledus.S3G128900"
Ledus.S3	AUGUSTUS	exon	10082058	10082906	.	-	.	transcript_id "Ledus.S3G128900.t1"; gene_id "Ledus.S3G128900"
Ledus.S3	AUGUSTUS	start_codon	10082904	10082906	.	-	0	transcript_id "Ledus.S3G128900.t1"; gene_id "Ledus.S3G128900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1323.t1 is derived from g8184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9254854	9258796	.	-	.	Ledus.S2G120500
Ledus.S2	AUGUSTUS	transcript	9254854	9258796	.	-	.	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	stop_codon	9254851	9254853	.	-	0	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	CDS	9254854	9257812	0.86	-	1	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	exon	9254854	9257812	.	-	.	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	intron	9257813	9257924	.	-	.	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	CDS	9257925	9258055	0.92	-	0	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	exon	9257925	9258055	.	-	.	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	intron	9258056	9258194	.	-	.	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	CDS	9258195	9258247	1	-	2	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	exon	9258195	9258247	.	-	.	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	intron	9258248	9258330	.	-	.	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	CDS	9258331	9258444	0.55	-	2	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	exon	9258331	9258444	.	-	.	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	intron	9258445	9258612	.	-	.	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	CDS	9258613	9258796	0.96	-	0	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	exon	9258613	9258796	.	-	.	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
Ledus.S2	AUGUSTUS	start_codon	9258794	9258796	.	-	0	transcript_id "Ledus.S2G120500.t1"; gene_id "Ledus.S2G120500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11339.t1 is derived from g4957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3669525	3670541	.	+	.	Ledus.S4G049500
Ledus.S4	AUGUSTUS	transcript	3669525	3670541	.	+	.	transcript_id "Ledus.S4G049500.t1"; gene_id "Ledus.S4G049500"
Ledus.S4	AUGUSTUS	start_codon	3669525	3669527	.	+	0	transcript_id "Ledus.S4G049500.t1"; gene_id "Ledus.S4G049500"
Ledus.S4	AUGUSTUS	CDS	3669525	3669612	0.56	+	0	transcript_id "Ledus.S4G049500.t1"; gene_id "Ledus.S4G049500"
Ledus.S4	AUGUSTUS	exon	3669525	3669612	.	+	.	transcript_id "Ledus.S4G049500.t1"; gene_id "Ledus.S4G049500"
Ledus.S4	AUGUSTUS	intron	3669613	3669900	.	+	.	transcript_id "Ledus.S4G049500.t1"; gene_id "Ledus.S4G049500"
Ledus.S4	AUGUSTUS	CDS	3669901	3670010	1	+	2	transcript_id "Ledus.S4G049500.t1"; gene_id "Ledus.S4G049500"
Ledus.S4	AUGUSTUS	exon	3669901	3670010	.	+	.	transcript_id "Ledus.S4G049500.t1"; gene_id "Ledus.S4G049500"
Ledus.S4	AUGUSTUS	intron	3670011	3670256	.	+	.	transcript_id "Ledus.S4G049500.t1"; gene_id "Ledus.S4G049500"
Ledus.S4	AUGUSTUS	CDS	3670257	3670541	0.98	+	0	transcript_id "Ledus.S4G049500.t1"; gene_id "Ledus.S4G049500"
Ledus.S4	AUGUSTUS	exon	3670257	3670541	.	+	.	transcript_id "Ledus.S4G049500.t1"; gene_id "Ledus.S4G049500"
Ledus.S4	AUGUSTUS	stop_codon	3670542	3670544	.	+	0	transcript_id "Ledus.S4G049500.t1"; gene_id "Ledus.S4G049500"
# This transcript jg7304.t2 is derived from g11975.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7305.t1 is derived from g11976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	904969	906366	.	-	.	Ledus.S5G008300
Ledus.S5	AUGUSTUS	transcript	904969	906366	.	-	.	transcript_id "Ledus.S5G008300.t1"; gene_id "Ledus.S5G008300"
Ledus.S5	AUGUSTUS	stop_codon	904966	904968	.	-	0	transcript_id "Ledus.S5G008300.t1"; gene_id "Ledus.S5G008300"
Ledus.S5	AUGUSTUS	CDS	904969	904971	0.93	-	0	transcript_id "Ledus.S5G008300.t1"; gene_id "Ledus.S5G008300"
Ledus.S5	AUGUSTUS	exon	904969	904971	.	-	.	transcript_id "Ledus.S5G008300.t1"; gene_id "Ledus.S5G008300"
Ledus.S5	AUGUSTUS	intron	904972	905166	.	-	.	transcript_id "Ledus.S5G008300.t1"; gene_id "Ledus.S5G008300"
Ledus.S5	AUGUSTUS	CDS	905167	906366	0.54	-	0	transcript_id "Ledus.S5G008300.t1"; gene_id "Ledus.S5G008300"
Ledus.S5	AUGUSTUS	exon	905167	906366	.	-	.	transcript_id "Ledus.S5G008300.t1"; gene_id "Ledus.S5G008300"
Ledus.S5	AUGUSTUS	start_codon	906364	906366	.	-	0	transcript_id "Ledus.S5G008300.t1"; gene_id "Ledus.S5G008300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7878.t1 is derived from g12549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7584693	7587525	.	-	.	Ledus.S5G065600
Ledus.S5	AUGUSTUS	transcript	7584693	7587525	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	stop_codon	7584690	7584692	.	-	0	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7584693	7584788	0.85	-	0	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7584693	7584788	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7584789	7584869	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7584870	7584944	1	-	0	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7584870	7584944	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7584945	7585035	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7585036	7585134	1	-	0	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7585036	7585134	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7585135	7585255	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7585256	7585318	1	-	0	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7585256	7585318	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7585319	7585396	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7585397	7585479	0.99	-	2	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7585397	7585479	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7585480	7585585	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7585586	7585822	0.56	-	2	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7585586	7585822	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7585823	7585920	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7585921	7586008	0.64	-	0	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7585921	7586008	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7586009	7586103	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7586104	7586185	0.99	-	1	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7586104	7586185	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7586186	7586309	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7586310	7586359	1	-	0	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7586310	7586359	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7586360	7586453	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7586454	7586540	1	-	0	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7586454	7586540	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7586541	7586625	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7586626	7586720	0.87	-	2	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7586626	7586720	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7586721	7586825	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7586826	7586913	0.9	-	0	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7586826	7586913	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7586914	7586999	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7587000	7587094	1	-	2	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7587000	7587094	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	intron	7587095	7587185	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	CDS	7587186	7587525	0.82	-	0	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	exon	7587186	7587525	.	-	.	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
Ledus.S5	AUGUSTUS	start_codon	7587523	7587525	.	-	0	transcript_id "Ledus.S5G065600.t1"; gene_id "Ledus.S5G065600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6384.t1 is derived from g3827.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30955839	30957656	.	-	.	Ledus.S1G380500
Ledus.S1	AUGUSTUS	transcript	30955839	30957656	.	-	.	transcript_id "Ledus.S1G380500.t1"; gene_id "Ledus.S1G380500"
Ledus.S1	AUGUSTUS	stop_codon	30955836	30955838	.	-	0	transcript_id "Ledus.S1G380500.t1"; gene_id "Ledus.S1G380500"
Ledus.S1	AUGUSTUS	CDS	30955839	30957656	0.65	-	0	transcript_id "Ledus.S1G380500.t1"; gene_id "Ledus.S1G380500"
Ledus.S1	AUGUSTUS	exon	30955839	30957656	.	-	.	transcript_id "Ledus.S1G380500.t1"; gene_id "Ledus.S1G380500"
Ledus.S1	AUGUSTUS	start_codon	30957654	30957656	.	-	0	transcript_id "Ledus.S1G380500.t1"; gene_id "Ledus.S1G380500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg151.t1 is derived from g7012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	298747	300448	.	-	.	Ledus.S2G003300
Ledus.S2	AUGUSTUS	transcript	298747	300448	.	-	.	transcript_id "Ledus.S2G003300.t1"; gene_id "Ledus.S2G003300"
Ledus.S2	AUGUSTUS	stop_codon	298744	298746	.	-	0	transcript_id "Ledus.S2G003300.t1"; gene_id "Ledus.S2G003300"
Ledus.S2	AUGUSTUS	CDS	298747	299376	1	-	0	transcript_id "Ledus.S2G003300.t1"; gene_id "Ledus.S2G003300"
Ledus.S2	AUGUSTUS	exon	298747	299376	.	-	.	transcript_id "Ledus.S2G003300.t1"; gene_id "Ledus.S2G003300"
Ledus.S2	AUGUSTUS	intron	299377	299449	.	-	.	transcript_id "Ledus.S2G003300.t1"; gene_id "Ledus.S2G003300"
Ledus.S2	AUGUSTUS	CDS	299450	300448	0.98	-	0	transcript_id "Ledus.S2G003300.t1"; gene_id "Ledus.S2G003300"
Ledus.S2	AUGUSTUS	exon	299450	300448	.	-	.	transcript_id "Ledus.S2G003300.t1"; gene_id "Ledus.S2G003300"
Ledus.S2	AUGUSTUS	start_codon	300446	300448	.	-	0	transcript_id "Ledus.S2G003300.t1"; gene_id "Ledus.S2G003300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8378.t1 is derived from g13050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11357082	11357642	.	+	.	Ledus.S5G115600
Ledus.S5	AUGUSTUS	transcript	11357082	11357642	.	+	.	transcript_id "Ledus.S5G115600.t1"; gene_id "Ledus.S5G115600"
Ledus.S5	AUGUSTUS	start_codon	11357082	11357084	.	+	0	transcript_id "Ledus.S5G115600.t1"; gene_id "Ledus.S5G115600"
Ledus.S5	AUGUSTUS	CDS	11357082	11357642	0.96	+	0	transcript_id "Ledus.S5G115600.t1"; gene_id "Ledus.S5G115600"
Ledus.S5	AUGUSTUS	exon	11357082	11357642	.	+	.	transcript_id "Ledus.S5G115600.t1"; gene_id "Ledus.S5G115600"
Ledus.S5	AUGUSTUS	stop_codon	11357643	11357645	.	+	0	transcript_id "Ledus.S5G115600.t1"; gene_id "Ledus.S5G115600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9538.t1 is derived from g10568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7626461	7631308	.	+	.	Ledus.S3G101500
Ledus.S3	AUGUSTUS	transcript	7626461	7631308	.	+	.	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	start_codon	7626461	7626463	.	+	0	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	CDS	7626461	7627961	1	+	0	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	exon	7626461	7627961	.	+	.	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	intron	7627962	7628061	.	+	.	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	CDS	7628062	7629362	1	+	2	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	exon	7628062	7629362	.	+	.	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	intron	7629363	7629465	.	+	.	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	CDS	7629466	7630775	0.98	+	0	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	exon	7629466	7630775	.	+	.	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	intron	7630776	7630886	.	+	.	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	CDS	7630887	7630932	0.99	+	1	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	exon	7630887	7630932	.	+	.	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	intron	7630933	7631008	.	+	.	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	CDS	7631009	7631133	0.99	+	0	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	exon	7631009	7631133	.	+	.	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	intron	7631134	7631286	.	+	.	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	CDS	7631287	7631308	0.98	+	1	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	exon	7631287	7631308	.	+	.	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
Ledus.S3	AUGUSTUS	stop_codon	7631309	7631311	.	+	0	transcript_id "Ledus.S3G101500.t1"; gene_id "Ledus.S3G101500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3362.t1 is derived from g797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7863328	7864149	.	+	.	Ledus.S1G078300
Ledus.S1	AUGUSTUS	transcript	7863328	7864149	.	+	.	transcript_id "Ledus.S1G078300.t1"; gene_id "Ledus.S1G078300"
Ledus.S1	AUGUSTUS	start_codon	7863328	7863330	.	+	0	transcript_id "Ledus.S1G078300.t1"; gene_id "Ledus.S1G078300"
Ledus.S1	AUGUSTUS	CDS	7863328	7863448	0.87	+	0	transcript_id "Ledus.S1G078300.t1"; gene_id "Ledus.S1G078300"
Ledus.S1	AUGUSTUS	exon	7863328	7863448	.	+	.	transcript_id "Ledus.S1G078300.t1"; gene_id "Ledus.S1G078300"
Ledus.S1	AUGUSTUS	intron	7863449	7863666	.	+	.	transcript_id "Ledus.S1G078300.t1"; gene_id "Ledus.S1G078300"
Ledus.S1	AUGUSTUS	CDS	7863667	7863839	0.65	+	2	transcript_id "Ledus.S1G078300.t1"; gene_id "Ledus.S1G078300"
Ledus.S1	AUGUSTUS	exon	7863667	7863839	.	+	.	transcript_id "Ledus.S1G078300.t1"; gene_id "Ledus.S1G078300"
Ledus.S1	AUGUSTUS	intron	7863840	7864026	.	+	.	transcript_id "Ledus.S1G078300.t1"; gene_id "Ledus.S1G078300"
Ledus.S1	AUGUSTUS	CDS	7864027	7864149	0.58	+	0	transcript_id "Ledus.S1G078300.t1"; gene_id "Ledus.S1G078300"
Ledus.S1	AUGUSTUS	exon	7864027	7864149	.	+	.	transcript_id "Ledus.S1G078300.t1"; gene_id "Ledus.S1G078300"
Ledus.S1	AUGUSTUS	stop_codon	7864150	7864152	.	+	0	transcript_id "Ledus.S1G078300.t1"; gene_id "Ledus.S1G078300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8287.t1 is derived from g12958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10499103	10499523	.	+	.	Ledus.S5G106500
Ledus.S5	AUGUSTUS	transcript	10499103	10499523	.	+	.	transcript_id "Ledus.S5G106500.t1"; gene_id "Ledus.S5G106500"
Ledus.S5	AUGUSTUS	start_codon	10499103	10499105	.	+	0	transcript_id "Ledus.S5G106500.t1"; gene_id "Ledus.S5G106500"
Ledus.S5	AUGUSTUS	CDS	10499103	10499248	0.51	+	0	transcript_id "Ledus.S5G106500.t1"; gene_id "Ledus.S5G106500"
Ledus.S5	AUGUSTUS	exon	10499103	10499248	.	+	.	transcript_id "Ledus.S5G106500.t1"; gene_id "Ledus.S5G106500"
Ledus.S5	AUGUSTUS	intron	10499249	10499327	.	+	.	transcript_id "Ledus.S5G106500.t1"; gene_id "Ledus.S5G106500"
Ledus.S5	AUGUSTUS	CDS	10499328	10499523	0.4	+	1	transcript_id "Ledus.S5G106500.t1"; gene_id "Ledus.S5G106500"
Ledus.S5	AUGUSTUS	exon	10499328	10499523	.	+	.	transcript_id "Ledus.S5G106500.t1"; gene_id "Ledus.S5G106500"
Ledus.S5	AUGUSTUS	stop_codon	10499524	10499526	.	+	0	transcript_id "Ledus.S5G106500.t1"; gene_id "Ledus.S5G106500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2906.t1 is derived from g341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4516706	4516903	.	+	.	Ledus.S1G032700
Ledus.S1	AUGUSTUS	transcript	4516706	4516903	.	+	.	transcript_id "Ledus.S1G032700.t1"; gene_id "Ledus.S1G032700"
Ledus.S1	AUGUSTUS	start_codon	4516706	4516708	.	+	0	transcript_id "Ledus.S1G032700.t1"; gene_id "Ledus.S1G032700"
Ledus.S1	AUGUSTUS	CDS	4516706	4516903	0.52	+	0	transcript_id "Ledus.S1G032700.t1"; gene_id "Ledus.S1G032700"
Ledus.S1	AUGUSTUS	exon	4516706	4516903	.	+	.	transcript_id "Ledus.S1G032700.t1"; gene_id "Ledus.S1G032700"
Ledus.S1	AUGUSTUS	stop_codon	4516904	4516906	.	+	0	transcript_id "Ledus.S1G032700.t1"; gene_id "Ledus.S1G032700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9829.t1 is derived from g10859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10298630	10302653	.	+	.	Ledus.S3G130600
Ledus.S3	AUGUSTUS	transcript	10298630	10302653	.	+	.	transcript_id "Ledus.S3G130600.t1"; gene_id "Ledus.S3G130600"
Ledus.S3	AUGUSTUS	start_codon	10298630	10298632	.	+	0	transcript_id "Ledus.S3G130600.t1"; gene_id "Ledus.S3G130600"
Ledus.S3	AUGUSTUS	CDS	10298630	10299985	0.47	+	0	transcript_id "Ledus.S3G130600.t1"; gene_id "Ledus.S3G130600"
Ledus.S3	AUGUSTUS	exon	10298630	10299985	.	+	.	transcript_id "Ledus.S3G130600.t1"; gene_id "Ledus.S3G130600"
Ledus.S3	AUGUSTUS	intron	10299986	10300194	.	+	.	transcript_id "Ledus.S3G130600.t1"; gene_id "Ledus.S3G130600"
Ledus.S3	AUGUSTUS	CDS	10300195	10300887	0.92	+	0	transcript_id "Ledus.S3G130600.t1"; gene_id "Ledus.S3G130600"
Ledus.S3	AUGUSTUS	exon	10300195	10300887	.	+	.	transcript_id "Ledus.S3G130600.t1"; gene_id "Ledus.S3G130600"
Ledus.S3	AUGUSTUS	intron	10300888	10301114	.	+	.	transcript_id "Ledus.S3G130600.t1"; gene_id "Ledus.S3G130600"
Ledus.S3	AUGUSTUS	CDS	10301115	10302653	1	+	0	transcript_id "Ledus.S3G130600.t1"; gene_id "Ledus.S3G130600"
Ledus.S3	AUGUSTUS	exon	10301115	10302653	.	+	.	transcript_id "Ledus.S3G130600.t1"; gene_id "Ledus.S3G130600"
Ledus.S3	AUGUSTUS	stop_codon	10302654	10302656	.	+	0	transcript_id "Ledus.S3G130600.t1"; gene_id "Ledus.S3G130600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9759.t1 is derived from g10789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9631952	9634003	.	-	.	Ledus.S3G123600
Ledus.S3	AUGUSTUS	transcript	9631952	9634003	.	-	.	transcript_id "Ledus.S3G123600.t1"; gene_id "Ledus.S3G123600"
Ledus.S3	AUGUSTUS	stop_codon	9631949	9631951	.	-	0	transcript_id "Ledus.S3G123600.t1"; gene_id "Ledus.S3G123600"
Ledus.S3	AUGUSTUS	CDS	9631952	9634003	1	-	0	transcript_id "Ledus.S3G123600.t1"; gene_id "Ledus.S3G123600"
Ledus.S3	AUGUSTUS	exon	9631952	9634003	.	-	.	transcript_id "Ledus.S3G123600.t1"; gene_id "Ledus.S3G123600"
Ledus.S3	AUGUSTUS	start_codon	9634001	9634003	.	-	0	transcript_id "Ledus.S3G123600.t1"; gene_id "Ledus.S3G123600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2283.t1 is derived from g9146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16920077	16922432	.	-	.	Ledus.S2G216500
Ledus.S2	AUGUSTUS	transcript	16920077	16922432	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	stop_codon	16920074	16920076	.	-	0	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	CDS	16920077	16920130	0.54	-	0	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	exon	16920077	16920130	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	intron	16920131	16920234	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	CDS	16920235	16920260	0.68	-	2	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	exon	16920235	16920260	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	intron	16920261	16920413	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	CDS	16920414	16920474	0.82	-	0	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	exon	16920414	16920474	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	intron	16920475	16920892	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	CDS	16920893	16921015	0.46	-	0	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	exon	16920893	16921015	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	intron	16921016	16921198	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	CDS	16921199	16921408	0.76	-	0	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	exon	16921199	16921408	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	intron	16921409	16921505	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	CDS	16921506	16921627	1	-	2	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	exon	16921506	16921627	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	intron	16921628	16922362	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	CDS	16922363	16922432	0.74	-	0	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	exon	16922363	16922432	.	-	.	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
Ledus.S2	AUGUSTUS	start_codon	16922430	16922432	.	-	0	transcript_id "Ledus.S2G216500.t1"; gene_id "Ledus.S2G216500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1812.t1 is derived from g8675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12720430	12721963	.	-	.	Ledus.S2G169400
Ledus.S2	AUGUSTUS	transcript	12720430	12721963	.	-	.	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	stop_codon	12720427	12720429	.	-	0	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	CDS	12720430	12720495	0.71	-	0	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	exon	12720430	12720495	.	-	.	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	intron	12720496	12720593	.	-	.	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	CDS	12720594	12720693	0.38	-	1	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	exon	12720594	12720693	.	-	.	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	intron	12720694	12720792	.	-	.	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	CDS	12720793	12721093	0.5	-	2	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	exon	12720793	12721093	.	-	.	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	intron	12721094	12721281	.	-	.	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	CDS	12721282	12721350	0.59	-	2	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	exon	12721282	12721350	.	-	.	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	intron	12721351	12721431	.	-	.	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	CDS	12721432	12721535	0.87	-	1	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	exon	12721432	12721535	.	-	.	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	intron	12721536	12721724	.	-	.	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	CDS	12721725	12721963	0.88	-	0	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	exon	12721725	12721963	.	-	.	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
Ledus.S2	AUGUSTUS	start_codon	12721961	12721963	.	-	0	transcript_id "Ledus.S2G169400.t1"; gene_id "Ledus.S2G169400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg963.t1 is derived from g7824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6368513	6369174	.	+	.	Ledus.S2G084500
Ledus.S2	AUGUSTUS	transcript	6368513	6369174	.	+	.	transcript_id "Ledus.S2G084500.t1"; gene_id "Ledus.S2G084500"
Ledus.S2	AUGUSTUS	start_codon	6368513	6368515	.	+	0	transcript_id "Ledus.S2G084500.t1"; gene_id "Ledus.S2G084500"
Ledus.S2	AUGUSTUS	CDS	6368513	6368775	0.44	+	0	transcript_id "Ledus.S2G084500.t1"; gene_id "Ledus.S2G084500"
Ledus.S2	AUGUSTUS	exon	6368513	6368775	.	+	.	transcript_id "Ledus.S2G084500.t1"; gene_id "Ledus.S2G084500"
Ledus.S2	AUGUSTUS	intron	6368776	6369059	.	+	.	transcript_id "Ledus.S2G084500.t1"; gene_id "Ledus.S2G084500"
Ledus.S2	AUGUSTUS	CDS	6369060	6369174	0.91	+	1	transcript_id "Ledus.S2G084500.t1"; gene_id "Ledus.S2G084500"
Ledus.S2	AUGUSTUS	exon	6369060	6369174	.	+	.	transcript_id "Ledus.S2G084500.t1"; gene_id "Ledus.S2G084500"
Ledus.S2	AUGUSTUS	stop_codon	6369175	6369177	.	+	0	transcript_id "Ledus.S2G084500.t1"; gene_id "Ledus.S2G084500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12198.t1 is derived from g5817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10259715	10260156	.	+	.	Ledus.S4G135400
Ledus.S4	AUGUSTUS	transcript	10259715	10260156	.	+	.	transcript_id "Ledus.S4G135400.t1"; gene_id "Ledus.S4G135400"
Ledus.S4	AUGUSTUS	start_codon	10259715	10259717	.	+	0	transcript_id "Ledus.S4G135400.t1"; gene_id "Ledus.S4G135400"
Ledus.S4	AUGUSTUS	CDS	10259715	10259768	0.94	+	0	transcript_id "Ledus.S4G135400.t1"; gene_id "Ledus.S4G135400"
Ledus.S4	AUGUSTUS	exon	10259715	10259768	.	+	.	transcript_id "Ledus.S4G135400.t1"; gene_id "Ledus.S4G135400"
Ledus.S4	AUGUSTUS	intron	10259769	10259928	.	+	.	transcript_id "Ledus.S4G135400.t1"; gene_id "Ledus.S4G135400"
Ledus.S4	AUGUSTUS	CDS	10259929	10260156	0.97	+	0	transcript_id "Ledus.S4G135400.t1"; gene_id "Ledus.S4G135400"
Ledus.S4	AUGUSTUS	exon	10259929	10260156	.	+	.	transcript_id "Ledus.S4G135400.t1"; gene_id "Ledus.S4G135400"
Ledus.S4	AUGUSTUS	stop_codon	10260157	10260159	.	+	0	transcript_id "Ledus.S4G135400.t1"; gene_id "Ledus.S4G135400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11584.t1 is derived from g5202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5398373	5398876	.	+	.	Ledus.S4G074000
Ledus.S4	AUGUSTUS	transcript	5398373	5398761	.	+	.	transcript_id "Ledus.S4G074000.t1"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	start_codon	5398373	5398375	.	+	0	transcript_id "Ledus.S4G074000.t1"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	CDS	5398373	5398594	0.73	+	0	transcript_id "Ledus.S4G074000.t1"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	exon	5398373	5398594	.	+	.	transcript_id "Ledus.S4G074000.t1"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	intron	5398595	5398737	.	+	.	transcript_id "Ledus.S4G074000.t1"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	CDS	5398738	5398761	0.6	+	0	transcript_id "Ledus.S4G074000.t1"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	exon	5398738	5398761	.	+	.	transcript_id "Ledus.S4G074000.t1"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	stop_codon	5398762	5398764	.	+	0	transcript_id "Ledus.S4G074000.t1"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	transcript	5398373	5398876	.	+	.	transcript_id "Ledus.S4G074000.t2"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	start_codon	5398373	5398375	.	+	0	transcript_id "Ledus.S4G074000.t2"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	CDS	5398373	5398587	0.64	+	0	transcript_id "Ledus.S4G074000.t2"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	exon	5398373	5398587	.	+	.	transcript_id "Ledus.S4G074000.t2"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	intron	5398588	5398737	.	+	.	transcript_id "Ledus.S4G074000.t2"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	CDS	5398738	5398876	0.65	+	1	transcript_id "Ledus.S4G074000.t2"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	exon	5398738	5398876	.	+	.	transcript_id "Ledus.S4G074000.t2"; gene_id "Ledus.S4G074000"
Ledus.S4	AUGUSTUS	stop_codon	5398877	5398879	.	+	0	transcript_id "Ledus.S4G074000.t2"; gene_id "Ledus.S4G074000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11684.t1 is derived from g5303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5966363	5968249	.	+	.	Ledus.S4G084000
Ledus.S4	AUGUSTUS	transcript	5966363	5968249	.	+	.	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	start_codon	5966363	5966365	.	+	0	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	CDS	5966363	5966674	0.7	+	0	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	exon	5966363	5966674	.	+	.	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	intron	5966675	5966745	.	+	.	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	CDS	5966746	5967052	0.71	+	0	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	exon	5966746	5967052	.	+	.	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	intron	5967053	5967129	.	+	.	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	CDS	5967130	5967513	0.45	+	2	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	exon	5967130	5967513	.	+	.	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	intron	5967514	5967620	.	+	.	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	CDS	5967621	5968249	0.87	+	2	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	exon	5967621	5968249	.	+	.	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
Ledus.S4	AUGUSTUS	stop_codon	5968250	5968252	.	+	0	transcript_id "Ledus.S4G084000.t1"; gene_id "Ledus.S4G084000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3357.t1 is derived from g792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7830315	7833315	.	-	.	Ledus.S1G077800
Ledus.S1	AUGUSTUS	transcript	7830315	7833315	.	-	.	transcript_id "Ledus.S1G077800.t1"; gene_id "Ledus.S1G077800"
Ledus.S1	AUGUSTUS	stop_codon	7830312	7830314	.	-	0	transcript_id "Ledus.S1G077800.t1"; gene_id "Ledus.S1G077800"
Ledus.S1	AUGUSTUS	CDS	7830315	7830658	1	-	2	transcript_id "Ledus.S1G077800.t1"; gene_id "Ledus.S1G077800"
Ledus.S1	AUGUSTUS	exon	7830315	7830658	.	-	.	transcript_id "Ledus.S1G077800.t1"; gene_id "Ledus.S1G077800"
Ledus.S1	AUGUSTUS	intron	7830659	7830779	.	-	.	transcript_id "Ledus.S1G077800.t1"; gene_id "Ledus.S1G077800"
Ledus.S1	AUGUSTUS	CDS	7830780	7833315	0.62	-	0	transcript_id "Ledus.S1G077800.t1"; gene_id "Ledus.S1G077800"
Ledus.S1	AUGUSTUS	exon	7830780	7833315	.	-	.	transcript_id "Ledus.S1G077800.t1"; gene_id "Ledus.S1G077800"
Ledus.S1	AUGUSTUS	start_codon	7833313	7833315	.	-	0	transcript_id "Ledus.S1G077800.t1"; gene_id "Ledus.S1G077800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10182.t1 is derived from g11212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13474892	13477042	.	-	.	Ledus.S3G165900
Ledus.S3	AUGUSTUS	transcript	13474892	13477042	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	stop_codon	13474889	13474891	.	-	0	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	CDS	13474892	13475562	0.96	-	2	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	exon	13474892	13475562	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	intron	13475563	13475635	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	CDS	13475636	13475739	0.99	-	1	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	exon	13475636	13475739	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	intron	13475740	13475838	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	CDS	13475839	13475984	0.99	-	0	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	exon	13475839	13475984	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	intron	13475985	13476072	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	CDS	13476073	13476102	1	-	0	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	exon	13476073	13476102	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	intron	13476103	13476204	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	CDS	13476205	13476288	0.82	-	0	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	exon	13476205	13476288	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	intron	13476289	13476420	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	CDS	13476421	13476530	1	-	2	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	exon	13476421	13476530	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	intron	13476531	13476625	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	CDS	13476626	13476723	0.81	-	1	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	exon	13476626	13476723	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	intron	13476724	13476847	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	CDS	13476848	13476867	0.81	-	0	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	exon	13476848	13476867	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	intron	13476868	13477003	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	CDS	13477004	13477042	0.72	-	0	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	exon	13477004	13477042	.	-	.	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
Ledus.S3	AUGUSTUS	start_codon	13477040	13477042	.	-	0	transcript_id "Ledus.S3G165900.t1"; gene_id "Ledus.S3G165900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3284.t1 is derived from g719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7241357	7243347	.	+	.	Ledus.S1G070500
Ledus.S1	AUGUSTUS	transcript	7241357	7243347	.	+	.	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	start_codon	7241357	7241359	.	+	0	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	CDS	7241357	7241605	0.78	+	0	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	exon	7241357	7241605	.	+	.	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	intron	7241606	7241697	.	+	.	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	CDS	7241698	7241932	0.99	+	0	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	exon	7241698	7241932	.	+	.	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	intron	7241933	7242011	.	+	.	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	CDS	7242012	7242109	0.57	+	2	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	exon	7242012	7242109	.	+	.	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	intron	7242110	7242197	.	+	.	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	CDS	7242198	7242385	0.99	+	0	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	exon	7242198	7242385	.	+	.	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	intron	7242386	7242478	.	+	.	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	CDS	7242479	7243117	0.98	+	1	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	exon	7242479	7243117	.	+	.	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	intron	7243118	7243238	.	+	.	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	CDS	7243239	7243347	0.96	+	1	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	exon	7243239	7243347	.	+	.	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
Ledus.S1	AUGUSTUS	stop_codon	7243348	7243350	.	+	0	transcript_id "Ledus.S1G070500.t1"; gene_id "Ledus.S1G070500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8710.t1 is derived from g9740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1546924	1547407	.	-	.	Ledus.S3G018700
Ledus.S3	AUGUSTUS	transcript	1546924	1547407	.	-	.	transcript_id "Ledus.S3G018700.t1"; gene_id "Ledus.S3G018700"
Ledus.S3	AUGUSTUS	stop_codon	1546921	1546923	.	-	0	transcript_id "Ledus.S3G018700.t1"; gene_id "Ledus.S3G018700"
Ledus.S3	AUGUSTUS	CDS	1546924	1546963	0.71	-	1	transcript_id "Ledus.S3G018700.t1"; gene_id "Ledus.S3G018700"
Ledus.S3	AUGUSTUS	exon	1546924	1546963	.	-	.	transcript_id "Ledus.S3G018700.t1"; gene_id "Ledus.S3G018700"
Ledus.S3	AUGUSTUS	intron	1546964	1547051	.	-	.	transcript_id "Ledus.S3G018700.t1"; gene_id "Ledus.S3G018700"
Ledus.S3	AUGUSTUS	CDS	1547052	1547200	0.99	-	0	transcript_id "Ledus.S3G018700.t1"; gene_id "Ledus.S3G018700"
Ledus.S3	AUGUSTUS	exon	1547052	1547200	.	-	.	transcript_id "Ledus.S3G018700.t1"; gene_id "Ledus.S3G018700"
Ledus.S3	AUGUSTUS	intron	1547201	1547284	.	-	.	transcript_id "Ledus.S3G018700.t1"; gene_id "Ledus.S3G018700"
Ledus.S3	AUGUSTUS	CDS	1547285	1547407	0.98	-	0	transcript_id "Ledus.S3G018700.t1"; gene_id "Ledus.S3G018700"
Ledus.S3	AUGUSTUS	exon	1547285	1547407	.	-	.	transcript_id "Ledus.S3G018700.t1"; gene_id "Ledus.S3G018700"
Ledus.S3	AUGUSTUS	start_codon	1547405	1547407	.	-	0	transcript_id "Ledus.S3G018700.t1"; gene_id "Ledus.S3G018700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4108.t1 is derived from g1544.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14731079	14732890	.	+	.	Ledus.S1G152900
Ledus.S1	AUGUSTUS	transcript	14731079	14732890	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	start_codon	14731079	14731081	.	+	0	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	CDS	14731079	14731228	0.52	+	0	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	exon	14731079	14731228	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	intron	14731229	14731310	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	CDS	14731311	14731413	1	+	0	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	exon	14731311	14731413	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	intron	14731414	14731497	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	CDS	14731498	14731607	1	+	2	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	exon	14731498	14731607	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	intron	14731608	14731724	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	CDS	14731725	14731793	0.92	+	0	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	exon	14731725	14731793	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	intron	14731794	14731901	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	CDS	14731902	14732017	0.93	+	0	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	exon	14731902	14732017	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	intron	14732018	14732110	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	CDS	14732111	14732165	0.98	+	1	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	exon	14732111	14732165	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	intron	14732166	14732276	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	CDS	14732277	14732397	0.98	+	0	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	exon	14732277	14732397	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	intron	14732398	14732487	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	CDS	14732488	14732535	1	+	2	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	exon	14732488	14732535	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	intron	14732536	14732605	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	CDS	14732606	14732700	1	+	2	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	exon	14732606	14732700	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	intron	14732701	14732791	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	CDS	14732792	14732890	0.99	+	0	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	exon	14732792	14732890	.	+	.	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
Ledus.S1	AUGUSTUS	stop_codon	14732891	14732893	.	+	0	transcript_id "Ledus.S1G152900.t1"; gene_id "Ledus.S1G152900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8718.t1 is derived from g9748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1568800	1570224	.	-	.	Ledus.S3G019500
Ledus.S3	AUGUSTUS	transcript	1568800	1570224	.	-	.	transcript_id "Ledus.S3G019500.t1"; gene_id "Ledus.S3G019500"
Ledus.S3	AUGUSTUS	stop_codon	1568797	1568799	.	-	0	transcript_id "Ledus.S3G019500.t1"; gene_id "Ledus.S3G019500"
Ledus.S3	AUGUSTUS	CDS	1568800	1570224	0.91	-	0	transcript_id "Ledus.S3G019500.t1"; gene_id "Ledus.S3G019500"
Ledus.S3	AUGUSTUS	exon	1568800	1570224	.	-	.	transcript_id "Ledus.S3G019500.t1"; gene_id "Ledus.S3G019500"
Ledus.S3	AUGUSTUS	start_codon	1570222	1570224	.	-	0	transcript_id "Ledus.S3G019500.t1"; gene_id "Ledus.S3G019500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7052.t1 is derived from g6583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1054291	1054500	.	+	.	Ledus.C7G011300
Ledus.C7	AUGUSTUS	transcript	1054291	1054500	.	+	.	transcript_id "Ledus.C7G011300.t1"; gene_id "Ledus.C7G011300"
Ledus.C7	AUGUSTUS	start_codon	1054291	1054293	.	+	0	transcript_id "Ledus.C7G011300.t1"; gene_id "Ledus.C7G011300"
Ledus.C7	AUGUSTUS	CDS	1054291	1054500	0.53	+	0	transcript_id "Ledus.C7G011300.t1"; gene_id "Ledus.C7G011300"
Ledus.C7	AUGUSTUS	exon	1054291	1054500	.	+	.	transcript_id "Ledus.C7G011300.t1"; gene_id "Ledus.C7G011300"
Ledus.C7	AUGUSTUS	stop_codon	1054501	1054503	.	+	0	transcript_id "Ledus.C7G011300.t1"; gene_id "Ledus.C7G011300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg569.t1 is derived from g7430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3393126	3395859	.	+	.	Ledus.S2G045100
Ledus.S2	AUGUSTUS	transcript	3393126	3395859	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	start_codon	3393126	3393128	.	+	0	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	CDS	3393126	3393383	1	+	0	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	exon	3393126	3393383	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	intron	3393384	3393568	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	CDS	3393569	3393717	1	+	0	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	exon	3393569	3393717	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	intron	3393718	3393836	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	CDS	3393837	3394032	1	+	1	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	exon	3393837	3394032	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	intron	3394033	3394153	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	CDS	3394154	3394364	1	+	0	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	exon	3394154	3394364	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	intron	3394365	3394453	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	CDS	3394454	3394763	1	+	2	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	exon	3394454	3394763	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	intron	3394764	3394931	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	CDS	3394932	3395303	1	+	1	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	exon	3394932	3395303	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	intron	3395304	3395443	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	CDS	3395444	3395521	1	+	1	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	exon	3395444	3395521	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	intron	3395522	3395615	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	CDS	3395616	3395859	1	+	1	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	exon	3395616	3395859	.	+	.	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
Ledus.S2	AUGUSTUS	stop_codon	3395860	3395862	.	+	0	transcript_id "Ledus.S2G045100.t1"; gene_id "Ledus.S2G045100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg50.t1 is derived from g9463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	117933	122412	.	-	.	Ledus.C8G001000
Ledus.C8	AUGUSTUS	transcript	117933	122412	.	-	.	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	stop_codon	117930	117932	.	-	0	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	CDS	117933	118020	0.68	-	1	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	exon	117933	118020	.	-	.	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	intron	118021	118675	.	-	.	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	CDS	118676	118749	0.59	-	0	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	exon	118676	118749	.	-	.	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	intron	118750	119249	.	-	.	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	CDS	119250	120831	0.62	-	1	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	exon	119250	120831	.	-	.	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	intron	120832	120921	.	-	.	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	CDS	120922	121883	0.75	-	0	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	exon	120922	121883	.	-	.	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	intron	121884	122011	.	-	.	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	CDS	122012	122044	0.74	-	0	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	exon	122012	122044	.	-	.	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	intron	122045	122295	.	-	.	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	CDS	122296	122412	0.79	-	0	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	exon	122296	122412	.	-	.	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
Ledus.C8	AUGUSTUS	start_codon	122410	122412	.	-	0	transcript_id "Ledus.C8G001000.t1"; gene_id "Ledus.C8G001000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12258.t1 is derived from g5878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10679802	10682711	.	+	.	Ledus.S4G141400
Ledus.S4	AUGUSTUS	transcript	10679802	10682711	.	+	.	transcript_id "Ledus.S4G141400.t1"; gene_id "Ledus.S4G141400"
Ledus.S4	AUGUSTUS	start_codon	10679802	10679804	.	+	0	transcript_id "Ledus.S4G141400.t1"; gene_id "Ledus.S4G141400"
Ledus.S4	AUGUSTUS	CDS	10679802	10681235	1	+	0	transcript_id "Ledus.S4G141400.t1"; gene_id "Ledus.S4G141400"
Ledus.S4	AUGUSTUS	exon	10679802	10681235	.	+	.	transcript_id "Ledus.S4G141400.t1"; gene_id "Ledus.S4G141400"
Ledus.S4	AUGUSTUS	intron	10681236	10681318	.	+	.	transcript_id "Ledus.S4G141400.t1"; gene_id "Ledus.S4G141400"
Ledus.S4	AUGUSTUS	CDS	10681319	10681462	1	+	0	transcript_id "Ledus.S4G141400.t1"; gene_id "Ledus.S4G141400"
Ledus.S4	AUGUSTUS	exon	10681319	10681462	.	+	.	transcript_id "Ledus.S4G141400.t1"; gene_id "Ledus.S4G141400"
Ledus.S4	AUGUSTUS	intron	10681463	10681580	.	+	.	transcript_id "Ledus.S4G141400.t1"; gene_id "Ledus.S4G141400"
Ledus.S4	AUGUSTUS	CDS	10681581	10682711	1	+	0	transcript_id "Ledus.S4G141400.t1"; gene_id "Ledus.S4G141400"
Ledus.S4	AUGUSTUS	exon	10681581	10682711	.	+	.	transcript_id "Ledus.S4G141400.t1"; gene_id "Ledus.S4G141400"
Ledus.S4	AUGUSTUS	stop_codon	10682712	10682714	.	+	0	transcript_id "Ledus.S4G141400.t1"; gene_id "Ledus.S4G141400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9251.t1 is derived from g10281.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5618336	5618812	.	-	.	Ledus.S3G072800
Ledus.S3	AUGUSTUS	transcript	5618336	5618812	.	-	.	transcript_id "Ledus.S3G072800.t1"; gene_id "Ledus.S3G072800"
Ledus.S3	AUGUSTUS	stop_codon	5618333	5618335	.	-	0	transcript_id "Ledus.S3G072800.t1"; gene_id "Ledus.S3G072800"
Ledus.S3	AUGUSTUS	CDS	5618336	5618812	0.04	-	0	transcript_id "Ledus.S3G072800.t1"; gene_id "Ledus.S3G072800"
Ledus.S3	AUGUSTUS	exon	5618336	5618812	.	-	.	transcript_id "Ledus.S3G072800.t1"; gene_id "Ledus.S3G072800"
Ledus.S3	AUGUSTUS	start_codon	5618810	5618812	.	-	0	transcript_id "Ledus.S3G072800.t1"; gene_id "Ledus.S3G072800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5444.t1 is derived from g2883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24321086	24321865	.	+	.	Ledus.S1G286500
Ledus.S1	AUGUSTUS	transcript	24321086	24321865	.	+	.	transcript_id "Ledus.S1G286500.t1"; gene_id "Ledus.S1G286500"
Ledus.S1	AUGUSTUS	start_codon	24321086	24321088	.	+	0	transcript_id "Ledus.S1G286500.t1"; gene_id "Ledus.S1G286500"
Ledus.S1	AUGUSTUS	CDS	24321086	24321865	0.71	+	0	transcript_id "Ledus.S1G286500.t1"; gene_id "Ledus.S1G286500"
Ledus.S1	AUGUSTUS	exon	24321086	24321865	.	+	.	transcript_id "Ledus.S1G286500.t1"; gene_id "Ledus.S1G286500"
Ledus.S1	AUGUSTUS	stop_codon	24321866	24321868	.	+	0	transcript_id "Ledus.S1G286500.t1"; gene_id "Ledus.S1G286500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8435.t1 is derived from g13107.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11686542	11688633	.	-	.	Ledus.S5G121300
Ledus.S5	AUGUSTUS	transcript	11686542	11688633	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	stop_codon	11686539	11686541	.	-	0	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11686542	11686609	1	-	2	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11686542	11686609	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11686610	11686734	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11686735	11686772	1	-	1	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11686735	11686772	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11686773	11686855	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11686856	11686939	1	-	1	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11686856	11686939	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11686940	11687037	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11687038	11687147	1	-	0	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11687038	11687147	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11687148	11687229	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11687230	11687340	1	-	0	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11687230	11687340	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11687341	11687489	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11687490	11687568	0.79	-	1	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11687490	11687568	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11687569	11687752	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11687753	11687829	0.95	-	0	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11687753	11687829	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11687830	11687982	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11687983	11688038	0.95	-	2	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11687983	11688038	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11688039	11688140	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11688141	11688633	0.71	-	0	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11688141	11688633	.	-	.	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	start_codon	11688631	11688633	.	-	0	transcript_id "Ledus.S5G121300.t1"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	transcript	11686542	11688633	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	stop_codon	11686539	11686541	.	-	0	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11686542	11686609	1	-	2	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11686542	11686609	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11686610	11686734	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11686735	11686772	1	-	1	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11686735	11686772	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11686773	11686855	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11686856	11686939	1	-	1	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11686856	11686939	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11686940	11687037	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11687038	11687147	1	-	0	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11687038	11687147	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11687148	11687229	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11687230	11687340	1	-	0	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11687230	11687340	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11687341	11687489	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11687490	11687568	0.82	-	1	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11687490	11687568	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11687569	11687669	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11687670	11687752	0.56	-	0	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11687670	11687752	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11687753	11687982	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11687983	11688038	0.83	-	2	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11687983	11688038	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	intron	11688039	11688140	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	CDS	11688141	11688633	0.77	-	0	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	exon	11688141	11688633	.	-	.	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
Ledus.S5	AUGUSTUS	start_codon	11688631	11688633	.	-	0	transcript_id "Ledus.S5G121300.t2"; gene_id "Ledus.S5G121300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7948.t1 is derived from g12619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8049338	8050603	.	+	.	Ledus.S5G072600
Ledus.S5	AUGUSTUS	transcript	8049338	8050603	.	+	.	transcript_id "Ledus.S5G072600.t1"; gene_id "Ledus.S5G072600"
Ledus.S5	AUGUSTUS	start_codon	8049338	8049340	.	+	0	transcript_id "Ledus.S5G072600.t1"; gene_id "Ledus.S5G072600"
Ledus.S5	AUGUSTUS	CDS	8049338	8050603	0.54	+	0	transcript_id "Ledus.S5G072600.t1"; gene_id "Ledus.S5G072600"
Ledus.S5	AUGUSTUS	exon	8049338	8050603	.	+	.	transcript_id "Ledus.S5G072600.t1"; gene_id "Ledus.S5G072600"
Ledus.S5	AUGUSTUS	stop_codon	8050604	8050606	.	+	0	transcript_id "Ledus.S5G072600.t1"; gene_id "Ledus.S5G072600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2738.t1 is derived from g172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2755197	2755496	.	-	.	Ledus.S1G015900
Ledus.S1	AUGUSTUS	transcript	2755197	2755496	.	-	.	transcript_id "Ledus.S1G015900.t1"; gene_id "Ledus.S1G015900"
Ledus.S1	AUGUSTUS	stop_codon	2755194	2755196	.	-	0	transcript_id "Ledus.S1G015900.t1"; gene_id "Ledus.S1G015900"
Ledus.S1	AUGUSTUS	CDS	2755197	2755496	0.93	-	0	transcript_id "Ledus.S1G015900.t1"; gene_id "Ledus.S1G015900"
Ledus.S1	AUGUSTUS	exon	2755197	2755496	.	-	.	transcript_id "Ledus.S1G015900.t1"; gene_id "Ledus.S1G015900"
Ledus.S1	AUGUSTUS	start_codon	2755494	2755496	.	-	0	transcript_id "Ledus.S1G015900.t1"; gene_id "Ledus.S1G015900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3576.t1 is derived from g1012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9755748	9757743	.	-	.	Ledus.S1G099700
Ledus.S1	AUGUSTUS	transcript	9755748	9757743	.	-	.	transcript_id "Ledus.S1G099700.t1"; gene_id "Ledus.S1G099700"
Ledus.S1	AUGUSTUS	stop_codon	9755745	9755747	.	-	0	transcript_id "Ledus.S1G099700.t1"; gene_id "Ledus.S1G099700"
Ledus.S1	AUGUSTUS	CDS	9755748	9757352	1	-	0	transcript_id "Ledus.S1G099700.t1"; gene_id "Ledus.S1G099700"
Ledus.S1	AUGUSTUS	exon	9755748	9757352	.	-	.	transcript_id "Ledus.S1G099700.t1"; gene_id "Ledus.S1G099700"
Ledus.S1	AUGUSTUS	intron	9757353	9757443	.	-	.	transcript_id "Ledus.S1G099700.t1"; gene_id "Ledus.S1G099700"
Ledus.S1	AUGUSTUS	CDS	9757444	9757743	0.48	-	0	transcript_id "Ledus.S1G099700.t1"; gene_id "Ledus.S1G099700"
Ledus.S1	AUGUSTUS	exon	9757444	9757743	.	-	.	transcript_id "Ledus.S1G099700.t1"; gene_id "Ledus.S1G099700"
Ledus.S1	AUGUSTUS	start_codon	9757741	9757743	.	-	0	transcript_id "Ledus.S1G099700.t1"; gene_id "Ledus.S1G099700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1071.t1 is derived from g7932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7223719	7225371	.	+	.	Ledus.S2G095300
Ledus.S2	AUGUSTUS	transcript	7223719	7225371	.	+	.	transcript_id "Ledus.S2G095300.t1"; gene_id "Ledus.S2G095300"
Ledus.S2	AUGUSTUS	start_codon	7223719	7223721	.	+	0	transcript_id "Ledus.S2G095300.t1"; gene_id "Ledus.S2G095300"
Ledus.S2	AUGUSTUS	CDS	7223719	7223727	0.93	+	0	transcript_id "Ledus.S2G095300.t1"; gene_id "Ledus.S2G095300"
Ledus.S2	AUGUSTUS	exon	7223719	7223727	.	+	.	transcript_id "Ledus.S2G095300.t1"; gene_id "Ledus.S2G095300"
Ledus.S2	AUGUSTUS	intron	7223728	7223818	.	+	.	transcript_id "Ledus.S2G095300.t1"; gene_id "Ledus.S2G095300"
Ledus.S2	AUGUSTUS	CDS	7223819	7224569	0.31	+	0	transcript_id "Ledus.S2G095300.t1"; gene_id "Ledus.S2G095300"
Ledus.S2	AUGUSTUS	exon	7223819	7224569	.	+	.	transcript_id "Ledus.S2G095300.t1"; gene_id "Ledus.S2G095300"
Ledus.S2	AUGUSTUS	intron	7224570	7224655	.	+	.	transcript_id "Ledus.S2G095300.t1"; gene_id "Ledus.S2G095300"
Ledus.S2	AUGUSTUS	CDS	7224656	7225371	0.57	+	2	transcript_id "Ledus.S2G095300.t1"; gene_id "Ledus.S2G095300"
Ledus.S2	AUGUSTUS	exon	7224656	7225371	.	+	.	transcript_id "Ledus.S2G095300.t1"; gene_id "Ledus.S2G095300"
Ledus.S2	AUGUSTUS	stop_codon	7225372	7225374	.	+	0	transcript_id "Ledus.S2G095300.t1"; gene_id "Ledus.S2G095300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5879.t1 is derived from g3321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27538339	27548489	.	+	.	Ledus.S1G330000
Ledus.S1	AUGUSTUS	transcript	27538339	27548489	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	start_codon	27538339	27538341	.	+	0	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27538339	27538497	1	+	0	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27538339	27538497	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27538498	27538578	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27538579	27538666	1	+	0	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27538579	27538666	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27538667	27538766	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27538767	27538824	1	+	2	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27538767	27538824	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27538825	27538920	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27538921	27539134	1	+	1	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27538921	27539134	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27539135	27539223	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27539224	27539261	1	+	0	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27539224	27539261	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27539262	27539347	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27539348	27539404	1	+	1	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27539348	27539404	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27539405	27539487	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27539488	27539551	1	+	1	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27539488	27539551	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27539552	27539635	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27539636	27540160	1	+	0	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27539636	27540160	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27540161	27540254	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27540255	27540356	1	+	0	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27540255	27540356	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27540357	27540490	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27540491	27540976	1	+	0	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27540491	27540976	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27540977	27541143	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27541144	27541691	0.67	+	0	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27541144	27541691	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27541692	27541945	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27541946	27543995	0.72	+	1	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27541946	27543995	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27543996	27544179	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27544180	27544313	1	+	0	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27544180	27544313	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27544314	27544407	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27544408	27544525	1	+	1	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27544408	27544525	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27544526	27544701	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27544702	27544769	1	+	0	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27544702	27544769	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27544770	27544866	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27544867	27545692	0.91	+	1	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27544867	27545692	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	intron	27545693	27545828	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	CDS	27545829	27548489	0.99	+	0	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	exon	27545829	27548489	.	+	.	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
Ledus.S1	AUGUSTUS	stop_codon	27548490	27548492	.	+	0	transcript_id "Ledus.S1G330000.t1"; gene_id "Ledus.S1G330000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5001.t1 is derived from g2439.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21091146	21095053	.	-	.	Ledus.S1G242200
Ledus.S1	AUGUSTUS	transcript	21091146	21095053	.	-	.	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	stop_codon	21091143	21091145	.	-	0	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	CDS	21091146	21093185	0.98	-	0	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	exon	21091146	21093185	.	-	.	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	intron	21093186	21093357	.	-	.	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	CDS	21093358	21093429	1	-	0	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	exon	21093358	21093429	.	-	.	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	intron	21093430	21093616	.	-	.	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	CDS	21093617	21093703	1	-	0	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	exon	21093617	21093703	.	-	.	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	intron	21093704	21093844	.	-	.	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	CDS	21093845	21094078	1	-	0	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	exon	21093845	21094078	.	-	.	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	intron	21094079	21094198	.	-	.	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	CDS	21094199	21094285	1	-	0	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	exon	21094199	21094285	.	-	.	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	intron	21094286	21094801	.	-	.	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	CDS	21094802	21095053	1	-	0	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	exon	21094802	21095053	.	-	.	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
Ledus.S1	AUGUSTUS	start_codon	21095051	21095053	.	-	0	transcript_id "Ledus.S1G242200.t1"; gene_id "Ledus.S1G242200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7468.t1 is derived from g12139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2981033	2981532	.	-	.	Ledus.S5G024600
Ledus.S5	AUGUSTUS	transcript	2981033	2981532	.	-	.	transcript_id "Ledus.S5G024600.t1"; gene_id "Ledus.S5G024600"
Ledus.S5	AUGUSTUS	stop_codon	2981030	2981032	.	-	0	transcript_id "Ledus.S5G024600.t1"; gene_id "Ledus.S5G024600"
Ledus.S5	AUGUSTUS	CDS	2981033	2981298	0.99	-	2	transcript_id "Ledus.S5G024600.t1"; gene_id "Ledus.S5G024600"
Ledus.S5	AUGUSTUS	exon	2981033	2981298	.	-	.	transcript_id "Ledus.S5G024600.t1"; gene_id "Ledus.S5G024600"
Ledus.S5	AUGUSTUS	intron	2981299	2981432	.	-	.	transcript_id "Ledus.S5G024600.t1"; gene_id "Ledus.S5G024600"
Ledus.S5	AUGUSTUS	CDS	2981433	2981532	0.85	-	0	transcript_id "Ledus.S5G024600.t1"; gene_id "Ledus.S5G024600"
Ledus.S5	AUGUSTUS	exon	2981433	2981532	.	-	.	transcript_id "Ledus.S5G024600.t1"; gene_id "Ledus.S5G024600"
Ledus.S5	AUGUSTUS	start_codon	2981530	2981532	.	-	0	transcript_id "Ledus.S5G024600.t1"; gene_id "Ledus.S5G024600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7401.t1 is derived from g12072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2097761	2098735	.	+	.	Ledus.S5G017900
Ledus.S5	AUGUSTUS	transcript	2097761	2098735	.	+	.	transcript_id "Ledus.S5G017900.t1"; gene_id "Ledus.S5G017900"
Ledus.S5	AUGUSTUS	start_codon	2097761	2097763	.	+	0	transcript_id "Ledus.S5G017900.t1"; gene_id "Ledus.S5G017900"
Ledus.S5	AUGUSTUS	CDS	2097761	2098735	1	+	0	transcript_id "Ledus.S5G017900.t1"; gene_id "Ledus.S5G017900"
Ledus.S5	AUGUSTUS	exon	2097761	2098735	.	+	.	transcript_id "Ledus.S5G017900.t1"; gene_id "Ledus.S5G017900"
Ledus.S5	AUGUSTUS	stop_codon	2098736	2098738	.	+	0	transcript_id "Ledus.S5G017900.t1"; gene_id "Ledus.S5G017900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8246.t1 is derived from g12917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10145297	10147921	.	+	.	Ledus.S5G102400
Ledus.S5	AUGUSTUS	transcript	10145297	10147921	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	start_codon	10145297	10145299	.	+	0	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	CDS	10145297	10145461	0.72	+	0	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	exon	10145297	10145461	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	intron	10145462	10145549	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	CDS	10145550	10145617	0.57	+	0	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	exon	10145550	10145617	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	intron	10145618	10145681	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	CDS	10145682	10145956	0.97	+	1	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	exon	10145682	10145956	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	intron	10145957	10146030	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	CDS	10146031	10147185	0.74	+	2	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	exon	10146031	10147185	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	intron	10147186	10147260	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	CDS	10147261	10147348	0.98	+	2	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	exon	10147261	10147348	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	intron	10147349	10147424	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	CDS	10147425	10147484	0.98	+	1	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	exon	10147425	10147484	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	intron	10147485	10147560	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	CDS	10147561	10147633	0.98	+	1	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	exon	10147561	10147633	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	intron	10147634	10147723	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	CDS	10147724	10147921	0.98	+	0	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	exon	10147724	10147921	.	+	.	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
Ledus.S5	AUGUSTUS	stop_codon	10147922	10147924	.	+	0	transcript_id "Ledus.S5G102400.t1"; gene_id "Ledus.S5G102400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10795.t1 is derived from g11827.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17780350	17785217	.	+	.	Ledus.S3G227200
Ledus.S3	AUGUSTUS	transcript	17780350	17785217	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	start_codon	17780350	17780352	.	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17780350	17780718	0.8	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17780350	17780718	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17780719	17780822	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17780823	17781515	0.94	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17780823	17781515	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17781516	17781622	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17781623	17781866	1	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17781623	17781866	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17781867	17782006	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17782007	17782148	1	+	2	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17782007	17782148	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17782149	17782302	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17782303	17782552	1	+	1	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17782303	17782552	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17782553	17782673	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17782674	17782883	1	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17782674	17782883	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17782884	17783031	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17783032	17783322	1	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17783032	17783322	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17783323	17783414	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17783415	17783486	0.99	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17783415	17783486	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17783487	17783598	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17783599	17783685	0.99	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17783599	17783685	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17783686	17783813	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17783814	17783936	1	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17783814	17783936	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17783937	17784022	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17784023	17784133	1	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17784023	17784133	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17784134	17784236	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17784237	17784275	1	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17784237	17784275	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17784276	17784497	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17784498	17784619	1	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17784498	17784619	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17784620	17784711	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17784712	17784856	1	+	1	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17784712	17784856	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17784857	17784935	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17784936	17785043	1	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17784936	17785043	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	intron	17785044	17785124	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	CDS	17785125	17785217	0.99	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	exon	17785125	17785217	.	+	.	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
Ledus.S3	AUGUSTUS	stop_codon	17785218	17785220	.	+	0	transcript_id "Ledus.S3G227200.t1"; gene_id "Ledus.S3G227200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg10340.t1 is derived from g11370.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14326696	14330342	.	-	.	Ledus.S3G181700
Ledus.S3	AUGUSTUS	transcript	14326696	14330342	.	-	.	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	stop_codon	14326693	14326695	.	-	0	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	CDS	14326696	14328210	0.99	-	0	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	exon	14326696	14328210	.	-	.	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	intron	14328211	14328309	.	-	.	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	CDS	14328310	14328853	1	-	1	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	exon	14328310	14328853	.	-	.	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	intron	14328854	14328935	.	-	.	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	CDS	14328936	14329321	0.95	-	0	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	exon	14328936	14329321	.	-	.	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	intron	14329322	14329426	.	-	.	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	CDS	14329427	14329671	0.94	-	2	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	exon	14329427	14329671	.	-	.	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	intron	14329672	14329750	.	-	.	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	CDS	14329751	14330342	0.8	-	0	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	exon	14329751	14330342	.	-	.	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	start_codon	14330340	14330342	.	-	0	transcript_id "Ledus.S3G181700.t1"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	transcript	14326696	14328042	.	-	.	transcript_id "Ledus.S3G181700.t2"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	stop_codon	14326693	14326695	.	-	0	transcript_id "Ledus.S3G181700.t2"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	CDS	14326696	14328042	0.97	-	0	transcript_id "Ledus.S3G181700.t2"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	exon	14326696	14328042	.	-	.	transcript_id "Ledus.S3G181700.t2"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	start_codon	14328040	14328042	.	-	0	transcript_id "Ledus.S3G181700.t2"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	transcript	14326696	14327712	.	-	.	transcript_id "Ledus.S3G181700.t3"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	stop_codon	14326693	14326695	.	-	0	transcript_id "Ledus.S3G181700.t3"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	CDS	14326696	14327712	0.49	-	0	transcript_id "Ledus.S3G181700.t3"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	exon	14326696	14327712	.	-	.	transcript_id "Ledus.S3G181700.t3"; gene_id "Ledus.S3G181700"
Ledus.S3	AUGUSTUS	start_codon	14327710	14327712	.	-	0	transcript_id "Ledus.S3G181700.t3"; gene_id "Ledus.S3G181700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2462.t1 is derived from g9325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18273107	18274693	.	-	.	Ledus.S2G234400
Ledus.S2	AUGUSTUS	transcript	18273107	18274693	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	stop_codon	18273104	18273106	.	-	0	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	CDS	18273107	18273126	1	-	2	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	exon	18273107	18273126	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	intron	18273127	18273211	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	CDS	18273212	18273329	1	-	0	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	exon	18273212	18273329	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	intron	18273330	18273431	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	CDS	18273432	18273485	1	-	0	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	exon	18273432	18273485	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	intron	18273486	18273606	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	CDS	18273607	18273661	1	-	1	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	exon	18273607	18273661	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	intron	18273662	18273742	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	CDS	18273743	18273848	1	-	2	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	exon	18273743	18273848	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	intron	18273849	18273945	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	CDS	18273946	18274009	1	-	0	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	exon	18273946	18274009	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	intron	18274010	18274140	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	CDS	18274141	18274228	1	-	1	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	exon	18274141	18274228	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	intron	18274229	18274313	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	CDS	18274314	18274509	1	-	2	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	exon	18274314	18274509	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	intron	18274510	18274602	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	CDS	18274603	18274693	0.96	-	0	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	exon	18274603	18274693	.	-	.	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
Ledus.S2	AUGUSTUS	start_codon	18274691	18274693	.	-	0	transcript_id "Ledus.S2G234400.t1"; gene_id "Ledus.S2G234400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12989.t1 is derived from g6799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1917499	1917705	.	-	.	Ledus.S6G005100
Ledus.S6	AUGUSTUS	transcript	1917499	1917705	.	-	.	transcript_id "Ledus.S6G005100.t1"; gene_id "Ledus.S6G005100"
Ledus.S6	AUGUSTUS	stop_codon	1917496	1917498	.	-	0	transcript_id "Ledus.S6G005100.t1"; gene_id "Ledus.S6G005100"
Ledus.S6	AUGUSTUS	CDS	1917499	1917705	0.5	-	0	transcript_id "Ledus.S6G005100.t1"; gene_id "Ledus.S6G005100"
Ledus.S6	AUGUSTUS	exon	1917499	1917705	.	-	.	transcript_id "Ledus.S6G005100.t1"; gene_id "Ledus.S6G005100"
Ledus.S6	AUGUSTUS	start_codon	1917703	1917705	.	-	0	transcript_id "Ledus.S6G005100.t1"; gene_id "Ledus.S6G005100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg796.t1 is derived from g7657.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5142807	5143445	.	+	.	Ledus.S2G067800
Ledus.S2	AUGUSTUS	transcript	5142807	5143445	.	+	.	transcript_id "Ledus.S2G067800.t1"; gene_id "Ledus.S2G067800"
Ledus.S2	AUGUSTUS	start_codon	5142807	5142809	.	+	0	transcript_id "Ledus.S2G067800.t1"; gene_id "Ledus.S2G067800"
Ledus.S2	AUGUSTUS	CDS	5142807	5143445	0.48	+	0	transcript_id "Ledus.S2G067800.t1"; gene_id "Ledus.S2G067800"
Ledus.S2	AUGUSTUS	exon	5142807	5143445	.	+	.	transcript_id "Ledus.S2G067800.t1"; gene_id "Ledus.S2G067800"
Ledus.S2	AUGUSTUS	stop_codon	5143446	5143448	.	+	0	transcript_id "Ledus.S2G067800.t1"; gene_id "Ledus.S2G067800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8346.t1 is derived from g13018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10920965	10922125	.	-	.	Ledus.S5G112400
Ledus.S5	AUGUSTUS	transcript	10920965	10922125	.	-	.	transcript_id "Ledus.S5G112400.t1"; gene_id "Ledus.S5G112400"
Ledus.S5	AUGUSTUS	stop_codon	10920962	10920964	.	-	0	transcript_id "Ledus.S5G112400.t1"; gene_id "Ledus.S5G112400"
Ledus.S5	AUGUSTUS	CDS	10920965	10921639	1	-	0	transcript_id "Ledus.S5G112400.t1"; gene_id "Ledus.S5G112400"
Ledus.S5	AUGUSTUS	exon	10920965	10921639	.	-	.	transcript_id "Ledus.S5G112400.t1"; gene_id "Ledus.S5G112400"
Ledus.S5	AUGUSTUS	intron	10921640	10921714	.	-	.	transcript_id "Ledus.S5G112400.t1"; gene_id "Ledus.S5G112400"
Ledus.S5	AUGUSTUS	CDS	10921715	10922125	1	-	0	transcript_id "Ledus.S5G112400.t1"; gene_id "Ledus.S5G112400"
Ledus.S5	AUGUSTUS	exon	10921715	10922125	.	-	.	transcript_id "Ledus.S5G112400.t1"; gene_id "Ledus.S5G112400"
Ledus.S5	AUGUSTUS	start_codon	10922123	10922125	.	-	0	transcript_id "Ledus.S5G112400.t1"; gene_id "Ledus.S5G112400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10014.t1 is derived from g11044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11875509	11876042	.	+	.	Ledus.S3G149100
Ledus.S3	AUGUSTUS	transcript	11875509	11876042	.	+	.	transcript_id "Ledus.S3G149100.t1"; gene_id "Ledus.S3G149100"
Ledus.S3	AUGUSTUS	start_codon	11875509	11875511	.	+	0	transcript_id "Ledus.S3G149100.t1"; gene_id "Ledus.S3G149100"
Ledus.S3	AUGUSTUS	CDS	11875509	11875658	0.45	+	0	transcript_id "Ledus.S3G149100.t1"; gene_id "Ledus.S3G149100"
Ledus.S3	AUGUSTUS	exon	11875509	11875658	.	+	.	transcript_id "Ledus.S3G149100.t1"; gene_id "Ledus.S3G149100"
Ledus.S3	AUGUSTUS	intron	11875659	11875741	.	+	.	transcript_id "Ledus.S3G149100.t1"; gene_id "Ledus.S3G149100"
Ledus.S3	AUGUSTUS	CDS	11875742	11875806	0.97	+	0	transcript_id "Ledus.S3G149100.t1"; gene_id "Ledus.S3G149100"
Ledus.S3	AUGUSTUS	exon	11875742	11875806	.	+	.	transcript_id "Ledus.S3G149100.t1"; gene_id "Ledus.S3G149100"
Ledus.S3	AUGUSTUS	intron	11875807	11875999	.	+	.	transcript_id "Ledus.S3G149100.t1"; gene_id "Ledus.S3G149100"
Ledus.S3	AUGUSTUS	CDS	11876000	11876042	1	+	1	transcript_id "Ledus.S3G149100.t1"; gene_id "Ledus.S3G149100"
Ledus.S3	AUGUSTUS	exon	11876000	11876042	.	+	.	transcript_id "Ledus.S3G149100.t1"; gene_id "Ledus.S3G149100"
Ledus.S3	AUGUSTUS	stop_codon	11876043	11876045	.	+	0	transcript_id "Ledus.S3G149100.t1"; gene_id "Ledus.S3G149100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13009.t1 is derived from g6819.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2739255	2739551	.	-	.	Ledus.S6G007100
Ledus.S6	AUGUSTUS	transcript	2739255	2739551	.	-	.	transcript_id "Ledus.S6G007100.t1"; gene_id "Ledus.S6G007100"
Ledus.S6	AUGUSTUS	stop_codon	2739252	2739254	.	-	0	transcript_id "Ledus.S6G007100.t1"; gene_id "Ledus.S6G007100"
Ledus.S6	AUGUSTUS	CDS	2739255	2739551	0.99	-	0	transcript_id "Ledus.S6G007100.t1"; gene_id "Ledus.S6G007100"
Ledus.S6	AUGUSTUS	exon	2739255	2739551	.	-	.	transcript_id "Ledus.S6G007100.t1"; gene_id "Ledus.S6G007100"
Ledus.S6	AUGUSTUS	start_codon	2739549	2739551	.	-	0	transcript_id "Ledus.S6G007100.t1"; gene_id "Ledus.S6G007100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3625.t1 is derived from g1061.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10258949	10261370	.	-	.	Ledus.S1G104600
Ledus.S1	AUGUSTUS	transcript	10258949	10261370	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	stop_codon	10258946	10258948	.	-	0	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10258949	10259382	0.52	-	2	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10258949	10259382	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10259383	10259509	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10259510	10259639	1	-	0	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10259510	10259639	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10259640	10259782	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10259783	10259951	1	-	1	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10259783	10259951	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10259952	10260024	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10260025	10260155	1	-	0	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10260025	10260155	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10260156	10260344	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10260345	10260527	1	-	0	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10260345	10260527	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10260528	10260742	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10260743	10260934	1	-	0	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10260743	10260934	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10260935	10261026	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10261027	10261086	1	-	0	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10261027	10261086	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10261087	10261175	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10261176	10261370	1	-	0	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10261176	10261370	.	-	.	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	start_codon	10261368	10261370	.	-	0	transcript_id "Ledus.S1G104600.t1"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	transcript	10258949	10261370	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	stop_codon	10258946	10258948	.	-	0	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10258949	10259382	0.47	-	2	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10258949	10259382	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10259383	10259509	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10259510	10259639	1	-	0	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10259510	10259639	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10259640	10259782	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10259783	10259951	1	-	1	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10259783	10259951	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10259952	10260024	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10260025	10260086	0.97	-	0	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10260025	10260086	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10260087	10260344	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10260345	10260527	1	-	0	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10260345	10260527	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10260528	10260742	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10260743	10260934	1	-	0	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10260743	10260934	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10260935	10261026	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10261027	10261086	1	-	0	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10261027	10261086	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	intron	10261087	10261175	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	CDS	10261176	10261370	0.99	-	0	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	exon	10261176	10261370	.	-	.	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
Ledus.S1	AUGUSTUS	start_codon	10261368	10261370	.	-	0	transcript_id "Ledus.S1G104600.t2"; gene_id "Ledus.S1G104600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6319.t1 is derived from g3762.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30476407	30480694	.	-	.	Ledus.S1G374000
Ledus.S1	AUGUSTUS	transcript	30476407	30480694	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	stop_codon	30476404	30476406	.	-	0	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30476407	30476812	0.99	-	1	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30476407	30476812	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30476813	30476894	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30476895	30476989	1	-	0	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30476895	30476989	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30476990	30477094	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30477095	30477183	0.95	-	2	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30477095	30477183	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30477184	30477288	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30477289	30477352	0.79	-	0	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30477289	30477352	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30477353	30477523	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30477524	30477736	0.92	-	0	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30477524	30477736	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30477737	30477827	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30477828	30477984	1	-	1	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30477828	30477984	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30477985	30478071	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30478072	30478172	1	-	0	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30478072	30478172	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30478173	30478280	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30478281	30478395	1	-	1	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30478281	30478395	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30478396	30478493	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30478494	30478557	1	-	2	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30478494	30478557	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30478558	30478677	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30478678	30478780	1	-	0	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30478678	30478780	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30478781	30478870	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30478871	30478972	1	-	0	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30478871	30478972	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30478973	30479056	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30479057	30479105	1	-	1	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30479057	30479105	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30479106	30479186	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30479187	30479305	1	-	0	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30479187	30479305	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30479306	30479563	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30479564	30479746	1	-	0	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30479564	30479746	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30479747	30479850	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30479851	30479972	1	-	2	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30479851	30479972	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30479973	30480051	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30480052	30480170	1	-	1	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30480052	30480170	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	intron	30480171	30480329	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	CDS	30480330	30480694	0.58	-	0	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	exon	30480330	30480694	.	-	.	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
Ledus.S1	AUGUSTUS	start_codon	30480692	30480694	.	-	0	transcript_id "Ledus.S1G374000.t1"; gene_id "Ledus.S1G374000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5023.t1 is derived from g2462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21186510	21195762	.	-	.	Ledus.S1G244400
Ledus.S1	AUGUSTUS	transcript	21186510	21195762	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	stop_codon	21186507	21186509	.	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21186510	21186740	0.99	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21186510	21186740	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21186741	21186847	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21186848	21187570	0.7	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21186848	21187570	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21187571	21187669	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21187670	21188179	1	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21187670	21188179	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21188180	21188390	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21188391	21188756	1	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21188391	21188756	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21188757	21188933	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21188934	21189468	1	-	1	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21188934	21189468	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21189469	21189594	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21189595	21189751	1	-	2	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21189595	21189751	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21189752	21189856	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21189857	21189989	1	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21189857	21189989	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21189990	21190106	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21190107	21190412	0.99	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21190107	21190412	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21190413	21190502	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21190503	21190835	1	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21190503	21190835	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21190836	21190922	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21190923	21191010	1	-	1	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21190923	21191010	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21191011	21191202	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21191203	21191300	1	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21191203	21191300	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21191301	21191382	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21191383	21191473	0.96	-	1	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21191383	21191473	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21191474	21191592	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21191593	21191687	0.99	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21191593	21191687	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21191688	21191865	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21191866	21191952	1	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21191866	21191952	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21191953	21192077	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21192078	21192121	1	-	2	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21192078	21192121	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21192122	21192373	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21192374	21192461	1	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21192374	21192461	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21192462	21192575	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21192576	21192636	0.96	-	1	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21192576	21192636	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21192637	21192770	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21192771	21192823	1	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21192771	21192823	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21192824	21192903	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21192904	21193102	0.81	-	1	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21192904	21193102	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21193103	21193226	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21193227	21193350	0.81	-	2	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21193227	21193350	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21193351	21193444	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21193445	21193565	1	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21193445	21193565	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21193566	21193673	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21193674	21193784	1	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21193674	21193784	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21193785	21193960	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21193961	21194039	1	-	1	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21193961	21194039	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21194040	21194212	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21194213	21194289	1	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21194213	21194289	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21194290	21194418	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21194419	21194553	1	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21194419	21194553	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21194554	21194794	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21194795	21194936	1	-	1	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21194795	21194936	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21194937	21195048	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21195049	21195140	0.99	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21195049	21195140	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21195141	21195257	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21195258	21195344	0.98	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21195258	21195344	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21195345	21195456	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21195457	21195585	0.98	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21195457	21195585	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	intron	21195586	21195672	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	CDS	21195673	21195762	0.99	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	exon	21195673	21195762	.	-	.	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
Ledus.S1	AUGUSTUS	start_codon	21195760	21195762	.	-	0	transcript_id "Ledus.S1G244400.t1"; gene_id "Ledus.S1G244400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg60.t1 is derived from g9473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	174367	175556	.	-	.	Ledus.C8G002000
Ledus.C8	AUGUSTUS	transcript	174367	175556	.	-	.	transcript_id "Ledus.C8G002000.t1"; gene_id "Ledus.C8G002000"
Ledus.C8	AUGUSTUS	stop_codon	174364	174366	.	-	0	transcript_id "Ledus.C8G002000.t1"; gene_id "Ledus.C8G002000"
Ledus.C8	AUGUSTUS	CDS	174367	174618	0.83	-	0	transcript_id "Ledus.C8G002000.t1"; gene_id "Ledus.C8G002000"
Ledus.C8	AUGUSTUS	exon	174367	174618	.	-	.	transcript_id "Ledus.C8G002000.t1"; gene_id "Ledus.C8G002000"
Ledus.C8	AUGUSTUS	intron	174619	174695	.	-	.	transcript_id "Ledus.C8G002000.t1"; gene_id "Ledus.C8G002000"
Ledus.C8	AUGUSTUS	CDS	174696	175556	1	-	0	transcript_id "Ledus.C8G002000.t1"; gene_id "Ledus.C8G002000"
Ledus.C8	AUGUSTUS	exon	174696	175556	.	-	.	transcript_id "Ledus.C8G002000.t1"; gene_id "Ledus.C8G002000"
Ledus.C8	AUGUSTUS	start_codon	175554	175556	.	-	0	transcript_id "Ledus.C8G002000.t1"; gene_id "Ledus.C8G002000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12187.t1 is derived from g5806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10207085	10208655	.	-	.	Ledus.S4G134300
Ledus.S4	AUGUSTUS	transcript	10207085	10208655	.	-	.	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	stop_codon	10207082	10207084	.	-	0	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	CDS	10207085	10207147	0.98	-	0	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	exon	10207085	10207147	.	-	.	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	intron	10207148	10207331	.	-	.	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	CDS	10207332	10207412	0.94	-	0	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	exon	10207332	10207412	.	-	.	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	intron	10207413	10207499	.	-	.	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	CDS	10207500	10207843	0.51	-	2	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	exon	10207500	10207843	.	-	.	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	intron	10207844	10207943	.	-	.	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	CDS	10207944	10208655	0.32	-	0	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	exon	10207944	10208655	.	-	.	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
Ledus.S4	AUGUSTUS	start_codon	10208653	10208655	.	-	0	transcript_id "Ledus.S4G134300.t1"; gene_id "Ledus.S4G134300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2309.t1 is derived from g9172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17124109	17124705	.	+	.	Ledus.S2G219100
Ledus.S2	AUGUSTUS	transcript	17124109	17124705	.	+	.	transcript_id "Ledus.S2G219100.t1"; gene_id "Ledus.S2G219100"
Ledus.S2	AUGUSTUS	start_codon	17124109	17124111	.	+	0	transcript_id "Ledus.S2G219100.t1"; gene_id "Ledus.S2G219100"
Ledus.S2	AUGUSTUS	CDS	17124109	17124705	0.42	+	0	transcript_id "Ledus.S2G219100.t1"; gene_id "Ledus.S2G219100"
Ledus.S2	AUGUSTUS	exon	17124109	17124705	.	+	.	transcript_id "Ledus.S2G219100.t1"; gene_id "Ledus.S2G219100"
Ledus.S2	AUGUSTUS	stop_codon	17124706	17124708	.	+	0	transcript_id "Ledus.S2G219100.t1"; gene_id "Ledus.S2G219100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10942.t1 is derived from g4560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	744348	745612	.	-	.	Ledus.S4G009800
Ledus.S4	AUGUSTUS	transcript	744348	745612	.	-	.	transcript_id "Ledus.S4G009800.t1"; gene_id "Ledus.S4G009800"
Ledus.S4	AUGUSTUS	stop_codon	744345	744347	.	-	0	transcript_id "Ledus.S4G009800.t1"; gene_id "Ledus.S4G009800"
Ledus.S4	AUGUSTUS	CDS	744348	745103	1	-	0	transcript_id "Ledus.S4G009800.t1"; gene_id "Ledus.S4G009800"
Ledus.S4	AUGUSTUS	exon	744348	745103	.	-	.	transcript_id "Ledus.S4G009800.t1"; gene_id "Ledus.S4G009800"
Ledus.S4	AUGUSTUS	intron	745104	745191	.	-	.	transcript_id "Ledus.S4G009800.t1"; gene_id "Ledus.S4G009800"
Ledus.S4	AUGUSTUS	CDS	745192	745476	1	-	0	transcript_id "Ledus.S4G009800.t1"; gene_id "Ledus.S4G009800"
Ledus.S4	AUGUSTUS	exon	745192	745476	.	-	.	transcript_id "Ledus.S4G009800.t1"; gene_id "Ledus.S4G009800"
Ledus.S4	AUGUSTUS	intron	745477	745597	.	-	.	transcript_id "Ledus.S4G009800.t1"; gene_id "Ledus.S4G009800"
Ledus.S4	AUGUSTUS	CDS	745598	745612	0.88	-	0	transcript_id "Ledus.S4G009800.t1"; gene_id "Ledus.S4G009800"
Ledus.S4	AUGUSTUS	exon	745598	745612	.	-	.	transcript_id "Ledus.S4G009800.t1"; gene_id "Ledus.S4G009800"
Ledus.S4	AUGUSTUS	start_codon	745610	745612	.	-	0	transcript_id "Ledus.S4G009800.t1"; gene_id "Ledus.S4G009800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9885.t1 is derived from g10915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10920763	10925372	.	-	.	Ledus.S3G136200
Ledus.S3	AUGUSTUS	transcript	10920763	10925372	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	stop_codon	10920760	10920762	.	-	0	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	CDS	10920763	10920763	0.96	-	1	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	exon	10920763	10920763	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	intron	10920764	10920849	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	CDS	10920850	10920873	0.96	-	1	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	exon	10920850	10920873	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	intron	10920874	10921114	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	CDS	10921115	10921275	1	-	0	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	exon	10921115	10921275	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	intron	10921276	10921443	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	CDS	10921444	10921848	1	-	0	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	exon	10921444	10921848	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	intron	10921849	10921952	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	CDS	10921953	10922486	0.69	-	0	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	exon	10921953	10922486	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	intron	10922487	10922661	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	CDS	10922662	10922917	1	-	1	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	exon	10922662	10922917	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	intron	10922918	10923045	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	CDS	10923046	10923285	1	-	1	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	exon	10923046	10923285	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	intron	10923286	10923433	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	CDS	10923434	10923518	0.83	-	2	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	exon	10923434	10923518	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	intron	10923519	10923644	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	CDS	10923645	10923959	0.48	-	2	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	exon	10923645	10923959	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	intron	10923960	10924065	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	CDS	10924066	10924127	0.99	-	1	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	exon	10924066	10924127	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	intron	10924128	10924280	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	CDS	10924281	10924559	1	-	1	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	exon	10924281	10924559	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	intron	10924560	10924662	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	CDS	10924663	10925372	0.99	-	0	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	exon	10924663	10925372	.	-	.	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
Ledus.S3	AUGUSTUS	start_codon	10925370	10925372	.	-	0	transcript_id "Ledus.S3G136200.t1"; gene_id "Ledus.S3G136200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11405.t1 is derived from g5023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4021255	4024008	.	-	.	Ledus.S4G056100
Ledus.S4	AUGUSTUS	transcript	4021255	4024008	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	stop_codon	4021252	4021254	.	-	0	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	CDS	4021255	4021449	0.96	-	0	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	exon	4021255	4021449	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	intron	4021450	4021562	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	CDS	4021563	4021673	0.97	-	0	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	exon	4021563	4021673	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	intron	4021674	4021758	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	CDS	4021759	4021937	1	-	2	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	exon	4021759	4021937	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	intron	4021938	4022035	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	CDS	4022036	4022133	1	-	1	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	exon	4022036	4022133	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	intron	4022134	4022223	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	CDS	4022224	4022489	1	-	0	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	exon	4022224	4022489	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	intron	4022490	4022625	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	CDS	4022626	4022781	1	-	0	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	exon	4022626	4022781	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	intron	4022782	4022874	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	CDS	4022875	4023063	1	-	0	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	exon	4022875	4023063	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	intron	4023064	4023156	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	CDS	4023157	4023270	1	-	0	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	exon	4023157	4023270	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	intron	4023271	4023358	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	CDS	4023359	4023510	1	-	2	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	exon	4023359	4023510	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	intron	4023511	4023668	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	CDS	4023669	4023831	0.99	-	0	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	exon	4023669	4023831	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	intron	4023832	4023966	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	CDS	4023967	4024008	0.92	-	0	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	exon	4023967	4024008	.	-	.	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
Ledus.S4	AUGUSTUS	start_codon	4024006	4024008	.	-	0	transcript_id "Ledus.S4G056100.t1"; gene_id "Ledus.S4G056100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3703.t1 is derived from g1139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11012779	11015697	.	-	.	Ledus.S1G112400
Ledus.S1	AUGUSTUS	transcript	11012779	11015697	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	stop_codon	11012776	11012778	.	-	0	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	CDS	11012779	11012912	0.77	-	2	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	exon	11012779	11012912	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	intron	11012913	11013135	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	CDS	11013136	11013194	1	-	1	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	exon	11013136	11013194	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	intron	11013195	11013452	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	CDS	11013453	11013513	1	-	2	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	exon	11013453	11013513	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	intron	11013514	11013655	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	CDS	11013656	11013680	0.89	-	0	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	exon	11013656	11013680	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	intron	11013681	11013772	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	CDS	11013773	11013796	0.89	-	0	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	exon	11013773	11013796	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	intron	11013797	11014014	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	CDS	11014015	11014107	1	-	0	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	exon	11014015	11014107	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	intron	11014108	11014265	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	CDS	11014266	11014296	1	-	1	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	exon	11014266	11014296	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	intron	11014297	11014505	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	CDS	11014506	11014605	1	-	2	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	exon	11014506	11014605	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	intron	11014606	11014771	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	CDS	11014772	11014886	0.96	-	0	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	exon	11014772	11014886	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	intron	11014887	11015005	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	CDS	11015006	11015080	0.69	-	0	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	exon	11015006	11015080	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	intron	11015081	11015395	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	CDS	11015396	11015424	0.63	-	2	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	exon	11015396	11015424	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	intron	11015425	11015597	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	CDS	11015598	11015697	0.64	-	0	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	exon	11015598	11015697	.	-	.	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
Ledus.S1	AUGUSTUS	start_codon	11015695	11015697	.	-	0	transcript_id "Ledus.S1G112400.t1"; gene_id "Ledus.S1G112400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8617.t1 is derived from g9647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	678968	681037	.	-	.	Ledus.S3G009400
Ledus.S3	AUGUSTUS	transcript	678968	681037	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	stop_codon	678965	678967	.	-	0	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	CDS	678968	679245	0.4	-	2	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	exon	678968	679245	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	intron	679246	679425	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	CDS	679426	679544	0.87	-	1	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	exon	679426	679544	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	intron	679545	679660	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	CDS	679661	679913	0.37	-	2	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	exon	679661	679913	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	intron	679914	680019	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	CDS	680020	680050	0.42	-	0	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	exon	680020	680050	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	intron	680051	680196	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	CDS	680197	680242	1	-	1	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	exon	680197	680242	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	intron	680243	680379	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	CDS	680380	680452	1	-	2	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	exon	680380	680452	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	intron	680453	680967	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	CDS	680968	681037	0.88	-	0	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	exon	680968	681037	.	-	.	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
Ledus.S3	AUGUSTUS	start_codon	681035	681037	.	-	0	transcript_id "Ledus.S3G009400.t1"; gene_id "Ledus.S3G009400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6971.t1 is derived from g6502.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	495156	495515	.	-	.	Ledus.C7G003200
Ledus.C7	AUGUSTUS	transcript	495156	495515	.	-	.	transcript_id "Ledus.C7G003200.t1"; gene_id "Ledus.C7G003200"
Ledus.C7	AUGUSTUS	stop_codon	495153	495155	.	-	0	transcript_id "Ledus.C7G003200.t1"; gene_id "Ledus.C7G003200"
Ledus.C7	AUGUSTUS	CDS	495156	495515	0.77	-	0	transcript_id "Ledus.C7G003200.t1"; gene_id "Ledus.C7G003200"
Ledus.C7	AUGUSTUS	exon	495156	495515	.	-	.	transcript_id "Ledus.C7G003200.t1"; gene_id "Ledus.C7G003200"
Ledus.C7	AUGUSTUS	start_codon	495513	495515	.	-	0	transcript_id "Ledus.C7G003200.t1"; gene_id "Ledus.C7G003200"
# This transcript jg6801.t2 is derived from g4245.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg6802.t1 is derived from g4246.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34318367	34320671	.	+	.	Ledus.S1G422300
Ledus.S1	AUGUSTUS	transcript	34318367	34320671	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	start_codon	34318367	34318369	.	+	0	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34318367	34318375	0.68	+	0	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34318367	34318375	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34318376	34318949	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34318950	34318998	0.59	+	0	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34318950	34318998	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34318999	34319110	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34319111	34319226	0.42	+	2	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34319111	34319226	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34319227	34319347	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34319348	34319591	0.47	+	0	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34319348	34319591	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34319592	34319690	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34319691	34319779	1	+	2	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34319691	34319779	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34319780	34319861	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34319862	34319940	0.99	+	0	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34319862	34319940	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34319941	34320075	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34320076	34320105	0.89	+	2	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34320076	34320105	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34320106	34320278	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34320279	34320353	0.97	+	2	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34320279	34320353	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34320354	34320522	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34320523	34320671	1	+	2	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34320523	34320671	.	+	.	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	stop_codon	34320926	34320928	.	+	0	transcript_id "Ledus.S1G422300.t1"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	transcript	34318367	34320671	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	start_codon	34318367	34318369	.	+	0	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34318367	34318375	0.65	+	0	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34318367	34318375	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34318376	34318949	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34318950	34318998	0.54	+	0	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34318950	34318998	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34318999	34319110	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34319111	34319226	0.37	+	2	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34319111	34319226	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34319227	34319347	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34319348	34319591	0.4	+	0	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34319348	34319591	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34319592	34319690	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34319691	34319779	1	+	2	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34319691	34319779	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34319780	34319876	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34319877	34319940	1	+	0	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34319877	34319940	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34319941	34320075	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34320076	34320105	0.9	+	2	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34320076	34320105	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34320106	34320278	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34320279	34320353	0.97	+	2	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34320279	34320353	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34320354	34320522	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34320523	34320671	1	+	2	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34320523	34320671	.	+	.	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	stop_codon	34320926	34320928	.	+	0	transcript_id "Ledus.S1G422300.t2"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	transcript	34318367	34320671	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	start_codon	34318367	34318369	.	+	0	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34318367	34318375	0.66	+	0	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34318367	34318375	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34318376	34318949	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34318950	34318998	0.52	+	0	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34318950	34318998	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34318999	34319110	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34319111	34319226	0.37	+	2	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34319111	34319226	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34319227	34319347	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34319348	34319591	0.39	+	0	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34319348	34319591	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34319592	34319708	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34319709	34319779	1	+	2	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34319709	34319779	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34319780	34319876	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34319877	34319940	0.98	+	0	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34319877	34319940	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34319941	34320075	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34320076	34320105	0.89	+	2	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34320076	34320105	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34320106	34320278	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34320279	34320353	0.99	+	2	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34320279	34320353	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	intron	34320354	34320522	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	CDS	34320523	34320671	1	+	2	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	exon	34320523	34320671	.	+	.	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
Ledus.S1	AUGUSTUS	stop_codon	34320926	34320928	.	+	0	transcript_id "Ledus.S1G422300.t3"; gene_id "Ledus.S1G422300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6927.t1 is derived from g4371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35520653	35520967	.	-	.	Ledus.S1G434800
Ledus.S1	AUGUSTUS	transcript	35520653	35520967	.	-	.	transcript_id "Ledus.S1G434800.t1"; gene_id "Ledus.S1G434800"
Ledus.S1	AUGUSTUS	stop_codon	35520650	35520652	.	-	0	transcript_id "Ledus.S1G434800.t1"; gene_id "Ledus.S1G434800"
Ledus.S1	AUGUSTUS	CDS	35520653	35520967	0.59	-	0	transcript_id "Ledus.S1G434800.t1"; gene_id "Ledus.S1G434800"
Ledus.S1	AUGUSTUS	exon	35520653	35520967	.	-	.	transcript_id "Ledus.S1G434800.t1"; gene_id "Ledus.S1G434800"
Ledus.S1	AUGUSTUS	start_codon	35520965	35520967	.	-	0	transcript_id "Ledus.S1G434800.t1"; gene_id "Ledus.S1G434800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5922.t1 is derived from g3365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27863223	27863900	.	+	.	Ledus.S1G334300
Ledus.S1	AUGUSTUS	transcript	27863223	27863900	.	+	.	transcript_id "Ledus.S1G334300.t1"; gene_id "Ledus.S1G334300"
Ledus.S1	AUGUSTUS	start_codon	27863223	27863225	.	+	0	transcript_id "Ledus.S1G334300.t1"; gene_id "Ledus.S1G334300"
Ledus.S1	AUGUSTUS	CDS	27863223	27863612	0.9	+	0	transcript_id "Ledus.S1G334300.t1"; gene_id "Ledus.S1G334300"
Ledus.S1	AUGUSTUS	exon	27863223	27863612	.	+	.	transcript_id "Ledus.S1G334300.t1"; gene_id "Ledus.S1G334300"
Ledus.S1	AUGUSTUS	intron	27863613	27863681	.	+	.	transcript_id "Ledus.S1G334300.t1"; gene_id "Ledus.S1G334300"
Ledus.S1	AUGUSTUS	CDS	27863682	27863900	0.56	+	0	transcript_id "Ledus.S1G334300.t1"; gene_id "Ledus.S1G334300"
Ledus.S1	AUGUSTUS	exon	27863682	27863900	.	+	.	transcript_id "Ledus.S1G334300.t1"; gene_id "Ledus.S1G334300"
Ledus.S1	AUGUSTUS	stop_codon	27863901	27863903	.	+	0	transcript_id "Ledus.S1G334300.t1"; gene_id "Ledus.S1G334300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7461.t1 is derived from g12132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2902968	2903264	.	-	.	Ledus.S5G023900
Ledus.S5	AUGUSTUS	transcript	2902968	2903264	.	-	.	transcript_id "Ledus.S5G023900.t1"; gene_id "Ledus.S5G023900"
Ledus.S5	AUGUSTUS	stop_codon	2902965	2902967	.	-	0	transcript_id "Ledus.S5G023900.t1"; gene_id "Ledus.S5G023900"
Ledus.S5	AUGUSTUS	CDS	2902968	2903264	0.83	-	0	transcript_id "Ledus.S5G023900.t1"; gene_id "Ledus.S5G023900"
Ledus.S5	AUGUSTUS	exon	2902968	2903264	.	-	.	transcript_id "Ledus.S5G023900.t1"; gene_id "Ledus.S5G023900"
Ledus.S5	AUGUSTUS	start_codon	2903262	2903264	.	-	0	transcript_id "Ledus.S5G023900.t1"; gene_id "Ledus.S5G023900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12575.t1 is derived from g6197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12932193	12932732	.	-	.	Ledus.S4G173100
Ledus.S4	AUGUSTUS	transcript	12932193	12932732	.	-	.	transcript_id "Ledus.S4G173100.t1"; gene_id "Ledus.S4G173100"
Ledus.S4	AUGUSTUS	stop_codon	12932190	12932192	.	-	0	transcript_id "Ledus.S4G173100.t1"; gene_id "Ledus.S4G173100"
Ledus.S4	AUGUSTUS	CDS	12932193	12932490	1	-	1	transcript_id "Ledus.S4G173100.t1"; gene_id "Ledus.S4G173100"
Ledus.S4	AUGUSTUS	exon	12932193	12932490	.	-	.	transcript_id "Ledus.S4G173100.t1"; gene_id "Ledus.S4G173100"
Ledus.S4	AUGUSTUS	intron	12932491	12932577	.	-	.	transcript_id "Ledus.S4G173100.t1"; gene_id "Ledus.S4G173100"
Ledus.S4	AUGUSTUS	CDS	12932578	12932732	0.95	-	0	transcript_id "Ledus.S4G173100.t1"; gene_id "Ledus.S4G173100"
Ledus.S4	AUGUSTUS	exon	12932578	12932732	.	-	.	transcript_id "Ledus.S4G173100.t1"; gene_id "Ledus.S4G173100"
Ledus.S4	AUGUSTUS	start_codon	12932730	12932732	.	-	0	transcript_id "Ledus.S4G173100.t1"; gene_id "Ledus.S4G173100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3558.t1 is derived from g994.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9546973	9551373	.	-	.	Ledus.S1G097900
Ledus.S1	AUGUSTUS	transcript	9546973	9551373	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	stop_codon	9546970	9546972	.	-	0	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9546973	9547107	0.48	-	0	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9546973	9547107	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9547108	9547188	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9547189	9547357	1	-	1	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9547189	9547357	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9547358	9547438	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9547439	9547608	1	-	0	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9547439	9547608	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9547609	9547721	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9547722	9547900	1	-	2	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9547722	9547900	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9547901	9548037	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9548038	9548103	1	-	2	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9548038	9548103	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9548104	9548249	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9548250	9548423	1	-	2	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9548250	9548423	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9548424	9548505	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9548506	9548804	1	-	1	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9548506	9548804	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9548805	9548899	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9548900	9549000	1	-	0	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9548900	9549000	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9549001	9549133	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9549134	9549218	1	-	1	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9549134	9549218	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9549219	9549354	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9549355	9549508	1	-	2	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9549355	9549508	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9549509	9549659	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9549660	9549820	1	-	1	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9549660	9549820	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9549821	9549983	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9549984	9550290	0.99	-	2	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9549984	9550290	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9550291	9551071	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9551072	9551162	0.87	-	0	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9551072	9551162	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	intron	9551163	9551346	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	CDS	9551347	9551373	0.5	-	0	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	exon	9551347	9551373	.	-	.	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
Ledus.S1	AUGUSTUS	start_codon	9551371	9551373	.	-	0	transcript_id "Ledus.S1G097900.t1"; gene_id "Ledus.S1G097900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3799.t1 is derived from g1235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12309495	12309758	.	-	.	Ledus.S1G122000
Ledus.S1	AUGUSTUS	transcript	12309495	12309758	.	-	.	transcript_id "Ledus.S1G122000.t1"; gene_id "Ledus.S1G122000"
Ledus.S1	AUGUSTUS	stop_codon	12309492	12309494	.	-	0	transcript_id "Ledus.S1G122000.t1"; gene_id "Ledus.S1G122000"
Ledus.S1	AUGUSTUS	CDS	12309495	12309758	0.71	-	0	transcript_id "Ledus.S1G122000.t1"; gene_id "Ledus.S1G122000"
Ledus.S1	AUGUSTUS	exon	12309495	12309758	.	-	.	transcript_id "Ledus.S1G122000.t1"; gene_id "Ledus.S1G122000"
Ledus.S1	AUGUSTUS	start_codon	12309756	12309758	.	-	0	transcript_id "Ledus.S1G122000.t1"; gene_id "Ledus.S1G122000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg955.t1 is derived from g7816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6304754	6306252	.	+	.	Ledus.S2G083700
Ledus.S2	AUGUSTUS	transcript	6304754	6306252	.	+	.	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	start_codon	6304754	6304756	.	+	0	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	CDS	6304754	6305092	0.72	+	0	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	exon	6304754	6305092	.	+	.	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	intron	6305093	6305163	.	+	.	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	CDS	6305164	6305321	0.67	+	0	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	exon	6305164	6305321	.	+	.	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	intron	6305322	6305537	.	+	.	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	CDS	6305538	6305580	0.25	+	1	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	exon	6305538	6305580	.	+	.	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	intron	6305581	6305741	.	+	.	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	CDS	6305742	6305814	0.32	+	0	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	exon	6305742	6305814	.	+	.	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	intron	6305815	6305989	.	+	.	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	CDS	6305990	6306252	0.3	+	2	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	exon	6305990	6306252	.	+	.	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
Ledus.S2	AUGUSTUS	stop_codon	6306253	6306255	.	+	0	transcript_id "Ledus.S2G083700.t1"; gene_id "Ledus.S2G083700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11183.t1 is derived from g4801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2489289	2490491	.	-	.	Ledus.S4G033900
Ledus.S4	AUGUSTUS	transcript	2489289	2490491	.	-	.	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	stop_codon	2489286	2489288	.	-	0	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	CDS	2489289	2489289	1	-	1	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	exon	2489289	2489289	.	-	.	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	intron	2489290	2489460	.	-	.	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	CDS	2489461	2489662	0.94	-	2	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	exon	2489461	2489662	.	-	.	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	intron	2489663	2489742	.	-	.	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	CDS	2489743	2489808	0.96	-	2	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	exon	2489743	2489808	.	-	.	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	intron	2489809	2489931	.	-	.	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	CDS	2489932	2490025	0.99	-	0	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	exon	2489932	2490025	.	-	.	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	intron	2490026	2490138	.	-	.	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	CDS	2490139	2490207	0.99	-	0	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	exon	2490139	2490207	.	-	.	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	intron	2490208	2490344	.	-	.	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	CDS	2490345	2490491	0.5	-	0	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	exon	2490345	2490491	.	-	.	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
Ledus.S4	AUGUSTUS	start_codon	2490489	2490491	.	-	0	transcript_id "Ledus.S4G033900.t1"; gene_id "Ledus.S4G033900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13069.t1 is derived from g6879.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4917439	4919419	.	-	.	Ledus.S6G013100
Ledus.S6	AUGUSTUS	transcript	4917439	4919419	.	-	.	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	stop_codon	4917278	4917280	.	-	0	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	CDS	4917439	4917485	1	-	2	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	exon	4917439	4917485	.	-	.	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	intron	4917486	4917636	.	-	.	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	CDS	4917637	4917785	1	-	1	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	exon	4917637	4917785	.	-	.	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	intron	4917786	4917880	.	-	.	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	CDS	4917881	4917990	1	-	0	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	exon	4917881	4917990	.	-	.	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	intron	4917991	4918114	.	-	.	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	CDS	4918115	4918202	1	-	1	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	exon	4918115	4918202	.	-	.	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	intron	4918203	4918359	.	-	.	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	CDS	4918360	4918666	1	-	2	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	exon	4918360	4918666	.	-	.	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	intron	4918667	4919346	.	-	.	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	CDS	4919347	4919419	0.83	-	0	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	exon	4919347	4919419	.	-	.	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
Ledus.S6	AUGUSTUS	start_codon	4919417	4919419	.	-	0	transcript_id "Ledus.S6G013100.t1"; gene_id "Ledus.S6G013100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4470.t1 is derived from g1906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17232617	17233876	.	-	.	Ledus.S1G189100
Ledus.S1	AUGUSTUS	transcript	17232617	17233876	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	stop_codon	17232614	17232616	.	-	0	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	CDS	17232617	17232752	1	-	1	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	exon	17232617	17232752	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	intron	17232753	17232824	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	CDS	17232825	17232933	1	-	2	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	exon	17232825	17232933	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	intron	17232934	17232991	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	CDS	17232992	17233075	1	-	2	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	exon	17232992	17233075	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	intron	17233076	17233167	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	CDS	17233168	17233250	1	-	1	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	exon	17233168	17233250	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	intron	17233251	17233340	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	CDS	17233341	17233378	1	-	0	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	exon	17233341	17233378	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	intron	17233379	17233468	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	CDS	17233469	17233549	1	-	0	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	exon	17233469	17233549	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	intron	17233550	17233652	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	CDS	17233653	17233783	0.97	-	2	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	exon	17233653	17233783	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	intron	17233784	17233869	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	CDS	17233870	17233876	0.9	-	0	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	exon	17233870	17233876	.	-	.	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
Ledus.S1	AUGUSTUS	start_codon	17233874	17233876	.	-	0	transcript_id "Ledus.S1G189100.t1"; gene_id "Ledus.S1G189100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9878.t1 is derived from g10908.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10893007	10898658	.	-	.	Ledus.S3G135500
Ledus.S3	AUGUSTUS	transcript	10893007	10898658	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	stop_codon	10893004	10893006	.	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10893007	10893070	0.62	-	1	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10893007	10893070	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10893071	10893304	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10893305	10893888	0.81	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10893305	10893888	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10893889	10893998	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10893999	10894097	0.99	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10893999	10894097	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10894098	10894178	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10894179	10894577	1	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10894179	10894577	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10894578	10894754	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10894755	10895105	1	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10894755	10895105	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10895106	10895201	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10895202	10895234	0.52	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10895202	10895234	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10895235	10895354	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10895355	10895585	0.97	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10895355	10895585	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10895586	10895926	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10895927	10896205	0.93	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10895927	10896205	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10896206	10896320	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10896321	10896509	0.62	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10896321	10896509	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10896510	10896610	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10896611	10896755	1	-	1	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10896611	10896755	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10896756	10896971	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10896972	10897027	1	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10896972	10897027	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10897028	10897155	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10897156	10897257	0.82	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10897156	10897257	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10897258	10897391	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10897392	10897652	0.96	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10897392	10897652	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10897653	10898036	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10898037	10898101	1	-	2	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10898037	10898101	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10898102	10898194	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10898195	10898338	0.97	-	2	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10898195	10898338	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10898339	10898630	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10898631	10898658	0.97	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10898631	10898658	.	-	.	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	start_codon	10898656	10898658	.	-	0	transcript_id "Ledus.S3G135500.t1"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	transcript	10893007	10898658	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	stop_codon	10893004	10893006	.	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10893007	10893070	0.51	-	1	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10893007	10893070	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10893071	10893304	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10893305	10893888	0.78	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10893305	10893888	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10893889	10893998	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10893999	10894097	0.99	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10893999	10894097	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10894098	10894178	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10894179	10894577	1	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10894179	10894577	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10894578	10894754	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10894755	10895108	1	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10894755	10895108	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10895109	10895201	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10895202	10895234	0.5	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10895202	10895234	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10895235	10895354	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10895355	10895585	0.99	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10895355	10895585	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10895586	10895926	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10895927	10896205	0.96	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10895927	10896205	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10896206	10896320	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10896321	10896509	0.55	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10896321	10896509	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10896510	10896610	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10896611	10896755	1	-	1	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10896611	10896755	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10896756	10896971	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10896972	10897027	1	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10896972	10897027	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10897028	10897155	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10897156	10897257	0.78	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10897156	10897257	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10897258	10897391	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10897392	10897652	1	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10897392	10897652	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10897653	10898036	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10898037	10898101	1	-	2	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10898037	10898101	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10898102	10898194	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10898195	10898338	0.97	-	2	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10898195	10898338	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	intron	10898339	10898630	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	CDS	10898631	10898658	0.97	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	exon	10898631	10898658	.	-	.	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
Ledus.S3	AUGUSTUS	start_codon	10898656	10898658	.	-	0	transcript_id "Ledus.S3G135500.t2"; gene_id "Ledus.S3G135500"
# This transcript jg1850.t2 is derived from g8713.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1851.t1 is derived from g8714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12953269	12953571	.	-	.	Ledus.S2G173300
Ledus.S2	AUGUSTUS	transcript	12953269	12953571	.	-	.	transcript_id "Ledus.S2G173300.t1"; gene_id "Ledus.S2G173300"
Ledus.S2	AUGUSTUS	stop_codon	12953266	12953268	.	-	0	transcript_id "Ledus.S2G173300.t1"; gene_id "Ledus.S2G173300"
Ledus.S2	AUGUSTUS	CDS	12953269	12953571	0.5	-	0	transcript_id "Ledus.S2G173300.t1"; gene_id "Ledus.S2G173300"
Ledus.S2	AUGUSTUS	exon	12953269	12953571	.	-	.	transcript_id "Ledus.S2G173300.t1"; gene_id "Ledus.S2G173300"
Ledus.S2	AUGUSTUS	start_codon	12953569	12953571	.	-	0	transcript_id "Ledus.S2G173300.t1"; gene_id "Ledus.S2G173300"
# This transcript jg10700.t2 is derived from g11730.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10701.t1 is derived from g11731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17273064	17276417	.	-	.	Ledus.S3G217800
Ledus.S3	AUGUSTUS	transcript	17273064	17276417	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	stop_codon	17273061	17273063	.	-	0	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	CDS	17273064	17274188	1	-	0	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	exon	17273064	17274188	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	intron	17274189	17274308	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	CDS	17274309	17274436	1	-	2	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	exon	17274309	17274436	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	intron	17274437	17274528	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	CDS	17274529	17274566	1	-	1	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	exon	17274529	17274566	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	intron	17274567	17274689	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	CDS	17274690	17274902	0.99	-	1	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	exon	17274690	17274902	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	intron	17274903	17274997	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	CDS	17274998	17275159	1	-	1	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	exon	17274998	17275159	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	intron	17275160	17275237	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	CDS	17275238	17275419	1	-	0	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	exon	17275238	17275419	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	intron	17275420	17275512	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	CDS	17275513	17275619	1	-	2	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	exon	17275513	17275619	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	intron	17275620	17275722	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	CDS	17275723	17275890	1	-	2	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	exon	17275723	17275890	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	intron	17275891	17275966	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	CDS	17275967	17276050	1	-	2	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	exon	17275967	17276050	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	intron	17276051	17276170	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	CDS	17276171	17276417	0.98	-	0	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	exon	17276171	17276417	.	-	.	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
Ledus.S3	AUGUSTUS	start_codon	17276415	17276417	.	-	0	transcript_id "Ledus.S3G217800.t1"; gene_id "Ledus.S3G217800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6910.t1 is derived from g4354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35128464	35129717	.	+	.	Ledus.S1G433100
Ledus.S1	AUGUSTUS	transcript	35128464	35129717	.	+	.	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	start_codon	35128464	35128466	.	+	0	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	CDS	35128464	35128580	0.98	+	0	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	exon	35128464	35128580	.	+	.	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	intron	35128581	35128858	.	+	.	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	CDS	35128859	35128973	1	+	0	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	exon	35128859	35128973	.	+	.	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	intron	35128974	35129158	.	+	.	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	CDS	35129159	35129427	1	+	2	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	exon	35129159	35129427	.	+	.	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	intron	35129428	35129513	.	+	.	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	CDS	35129514	35129717	0.98	+	0	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	exon	35129514	35129717	.	+	.	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
Ledus.S1	AUGUSTUS	stop_codon	35129718	35129720	.	+	0	transcript_id "Ledus.S1G433100.t1"; gene_id "Ledus.S1G433100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3262.t1 is derived from g697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7165743	7167248	.	-	.	Ledus.S1G068300
Ledus.S1	AUGUSTUS	transcript	7165743	7167248	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	stop_codon	7165740	7165742	.	-	0	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	CDS	7165743	7165832	0.85	-	0	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	exon	7165743	7165832	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	intron	7165833	7165921	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	CDS	7165922	7166003	1	-	1	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	exon	7165922	7166003	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	intron	7166004	7166095	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	CDS	7166096	7166171	1	-	2	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	exon	7166096	7166171	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	intron	7166172	7166280	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	CDS	7166281	7166353	1	-	0	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	exon	7166281	7166353	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	intron	7166354	7166439	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	CDS	7166440	7166504	1	-	2	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	exon	7166440	7166504	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	intron	7166505	7166617	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	CDS	7166618	7166741	0.9	-	0	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	exon	7166618	7166741	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	intron	7166742	7166833	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	CDS	7166834	7166910	1	-	2	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	exon	7166834	7166910	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	intron	7166911	7166993	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	CDS	7166994	7167095	1	-	2	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	exon	7166994	7167095	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	intron	7167096	7167190	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	CDS	7167191	7167248	0.94	-	0	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	exon	7167191	7167248	.	-	.	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
Ledus.S1	AUGUSTUS	start_codon	7167246	7167248	.	-	0	transcript_id "Ledus.S1G068300.t1"; gene_id "Ledus.S1G068300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3550.t1 is derived from g986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9398293	9398889	.	+	.	Ledus.S1G097100
Ledus.S1	AUGUSTUS	transcript	9398293	9398889	.	+	.	transcript_id "Ledus.S1G097100.t1"; gene_id "Ledus.S1G097100"
Ledus.S1	AUGUSTUS	start_codon	9398293	9398295	.	+	0	transcript_id "Ledus.S1G097100.t1"; gene_id "Ledus.S1G097100"
Ledus.S1	AUGUSTUS	CDS	9398293	9398889	0.45	+	0	transcript_id "Ledus.S1G097100.t1"; gene_id "Ledus.S1G097100"
Ledus.S1	AUGUSTUS	exon	9398293	9398889	.	+	.	transcript_id "Ledus.S1G097100.t1"; gene_id "Ledus.S1G097100"
Ledus.S1	AUGUSTUS	stop_codon	9398890	9398892	.	+	0	transcript_id "Ledus.S1G097100.t1"; gene_id "Ledus.S1G097100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg924.t1 is derived from g7785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6181205	6182388	.	+	.	Ledus.S2G080600
Ledus.S2	AUGUSTUS	transcript	6181205	6182388	.	+	.	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	start_codon	6181205	6181207	.	+	0	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	CDS	6181205	6181382	0.75	+	0	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	exon	6181205	6181382	.	+	.	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	intron	6181383	6181540	.	+	.	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	CDS	6181541	6181581	0.71	+	2	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	exon	6181541	6181581	.	+	.	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	intron	6181582	6181650	.	+	.	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	CDS	6181651	6181773	1	+	0	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	exon	6181651	6181773	.	+	.	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	intron	6181774	6181851	.	+	.	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	CDS	6181852	6181980	1	+	0	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	exon	6181852	6181980	.	+	.	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	intron	6181981	6182067	.	+	.	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	CDS	6182068	6182197	1	+	0	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	exon	6182068	6182197	.	+	.	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	intron	6182198	6182299	.	+	.	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	CDS	6182300	6182388	1	+	2	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	exon	6182300	6182388	.	+	.	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
Ledus.S2	AUGUSTUS	stop_codon	6182389	6182391	.	+	0	transcript_id "Ledus.S2G080600.t1"; gene_id "Ledus.S2G080600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10107.t1 is derived from g11137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12734603	12735545	.	-	.	Ledus.S3G158400
Ledus.S3	AUGUSTUS	transcript	12734603	12735545	.	-	.	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	stop_codon	12734600	12734602	.	-	0	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	CDS	12734603	12734776	1	-	0	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	exon	12734603	12734776	.	-	.	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	intron	12734777	12734871	.	-	.	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	CDS	12734872	12735008	1	-	2	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	exon	12734872	12735008	.	-	.	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	intron	12735009	12735092	.	-	.	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	CDS	12735093	12735229	1	-	1	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	exon	12735093	12735229	.	-	.	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	intron	12735230	12735318	.	-	.	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	CDS	12735319	12735545	1	-	0	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	exon	12735319	12735545	.	-	.	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
Ledus.S3	AUGUSTUS	start_codon	12735543	12735545	.	-	0	transcript_id "Ledus.S3G158400.t1"; gene_id "Ledus.S3G158400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7988.t1 is derived from g12659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8360363	8361977	.	+	.	Ledus.S5G076600
Ledus.S5	AUGUSTUS	transcript	8360363	8361977	.	+	.	transcript_id "Ledus.S5G076600.t1"; gene_id "Ledus.S5G076600"
Ledus.S5	AUGUSTUS	start_codon	8360363	8360365	.	+	0	transcript_id "Ledus.S5G076600.t1"; gene_id "Ledus.S5G076600"
Ledus.S5	AUGUSTUS	CDS	8360363	8360489	0.79	+	0	transcript_id "Ledus.S5G076600.t1"; gene_id "Ledus.S5G076600"
Ledus.S5	AUGUSTUS	exon	8360363	8360489	.	+	.	transcript_id "Ledus.S5G076600.t1"; gene_id "Ledus.S5G076600"
Ledus.S5	AUGUSTUS	intron	8360490	8360580	.	+	.	transcript_id "Ledus.S5G076600.t1"; gene_id "Ledus.S5G076600"
Ledus.S5	AUGUSTUS	CDS	8360581	8360679	1	+	2	transcript_id "Ledus.S5G076600.t1"; gene_id "Ledus.S5G076600"
Ledus.S5	AUGUSTUS	exon	8360581	8360679	.	+	.	transcript_id "Ledus.S5G076600.t1"; gene_id "Ledus.S5G076600"
Ledus.S5	AUGUSTUS	intron	8360680	8360766	.	+	.	transcript_id "Ledus.S5G076600.t1"; gene_id "Ledus.S5G076600"
Ledus.S5	AUGUSTUS	CDS	8360767	8361977	0.95	+	2	transcript_id "Ledus.S5G076600.t1"; gene_id "Ledus.S5G076600"
Ledus.S5	AUGUSTUS	exon	8360767	8361977	.	+	.	transcript_id "Ledus.S5G076600.t1"; gene_id "Ledus.S5G076600"
Ledus.S5	AUGUSTUS	stop_codon	8361978	8361980	.	+	0	transcript_id "Ledus.S5G076600.t1"; gene_id "Ledus.S5G076600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10850.t1 is derived from g4468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	74604	74897	.	+	.	Ledus.S4G000600
Ledus.S4	AUGUSTUS	transcript	74604	74897	.	+	.	transcript_id "Ledus.S4G000600.t1"; gene_id "Ledus.S4G000600"
Ledus.S4	AUGUSTUS	start_codon	74604	74606	.	+	0	transcript_id "Ledus.S4G000600.t1"; gene_id "Ledus.S4G000600"
Ledus.S4	AUGUSTUS	CDS	74604	74897	1	+	0	transcript_id "Ledus.S4G000600.t1"; gene_id "Ledus.S4G000600"
Ledus.S4	AUGUSTUS	exon	74604	74897	.	+	.	transcript_id "Ledus.S4G000600.t1"; gene_id "Ledus.S4G000600"
Ledus.S4	AUGUSTUS	stop_codon	74898	74900	.	+	0	transcript_id "Ledus.S4G000600.t1"; gene_id "Ledus.S4G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11994.t1 is derived from g5613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8374043	8375818	.	-	.	Ledus.S4G115000
Ledus.S4	AUGUSTUS	transcript	8374043	8375818	.	-	.	transcript_id "Ledus.S4G115000.t1"; gene_id "Ledus.S4G115000"
Ledus.S4	AUGUSTUS	stop_codon	8374040	8374042	.	-	0	transcript_id "Ledus.S4G115000.t1"; gene_id "Ledus.S4G115000"
Ledus.S4	AUGUSTUS	CDS	8374043	8375818	0.71	-	0	transcript_id "Ledus.S4G115000.t1"; gene_id "Ledus.S4G115000"
Ledus.S4	AUGUSTUS	exon	8374043	8375818	.	-	.	transcript_id "Ledus.S4G115000.t1"; gene_id "Ledus.S4G115000"
Ledus.S4	AUGUSTUS	start_codon	8375816	8375818	.	-	0	transcript_id "Ledus.S4G115000.t1"; gene_id "Ledus.S4G115000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7935.t1 is derived from g12606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7935366	7936441	.	-	.	Ledus.S5G071300
Ledus.S5	AUGUSTUS	transcript	7935366	7936441	.	-	.	transcript_id "Ledus.S5G071300.t1"; gene_id "Ledus.S5G071300"
Ledus.S5	AUGUSTUS	stop_codon	7935363	7935365	.	-	0	transcript_id "Ledus.S5G071300.t1"; gene_id "Ledus.S5G071300"
Ledus.S5	AUGUSTUS	CDS	7935366	7936190	0.92	-	0	transcript_id "Ledus.S5G071300.t1"; gene_id "Ledus.S5G071300"
Ledus.S5	AUGUSTUS	exon	7935366	7936190	.	-	.	transcript_id "Ledus.S5G071300.t1"; gene_id "Ledus.S5G071300"
Ledus.S5	AUGUSTUS	intron	7936191	7936438	.	-	.	transcript_id "Ledus.S5G071300.t1"; gene_id "Ledus.S5G071300"
Ledus.S5	AUGUSTUS	CDS	7936439	7936441	0.87	-	0	transcript_id "Ledus.S5G071300.t1"; gene_id "Ledus.S5G071300"
Ledus.S5	AUGUSTUS	exon	7936439	7936441	.	-	.	transcript_id "Ledus.S5G071300.t1"; gene_id "Ledus.S5G071300"
Ledus.S5	AUGUSTUS	start_codon	7936439	7936441	.	-	0	transcript_id "Ledus.S5G071300.t1"; gene_id "Ledus.S5G071300"
# This transcript jg426.t2 is derived from g7287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg427.t1 is derived from g7288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2400410	2400993	.	+	.	Ledus.S2G030900
Ledus.S2	AUGUSTUS	transcript	2400410	2400993	.	+	.	transcript_id "Ledus.S2G030900.t1"; gene_id "Ledus.S2G030900"
Ledus.S2	AUGUSTUS	start_codon	2400410	2400412	.	+	0	transcript_id "Ledus.S2G030900.t1"; gene_id "Ledus.S2G030900"
Ledus.S2	AUGUSTUS	CDS	2400410	2400581	0.31	+	0	transcript_id "Ledus.S2G030900.t1"; gene_id "Ledus.S2G030900"
Ledus.S2	AUGUSTUS	exon	2400410	2400581	.	+	.	transcript_id "Ledus.S2G030900.t1"; gene_id "Ledus.S2G030900"
Ledus.S2	AUGUSTUS	intron	2400582	2400673	.	+	.	transcript_id "Ledus.S2G030900.t1"; gene_id "Ledus.S2G030900"
Ledus.S2	AUGUSTUS	CDS	2400674	2400993	1	+	2	transcript_id "Ledus.S2G030900.t1"; gene_id "Ledus.S2G030900"
Ledus.S2	AUGUSTUS	exon	2400674	2400993	.	+	.	transcript_id "Ledus.S2G030900.t1"; gene_id "Ledus.S2G030900"
Ledus.S2	AUGUSTUS	stop_codon	2400994	2400996	.	+	0	transcript_id "Ledus.S2G030900.t1"; gene_id "Ledus.S2G030900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10837.t1 is derived from g6.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C22	AUGUSTUS	gene	14821	15747	.	-	.	Ledus.C22G000400
Ledus.C22	AUGUSTUS	transcript	14821	15747	.	-	.	transcript_id "Ledus.C22G000400.t1"; gene_id "Ledus.C22G000400"
Ledus.C22	AUGUSTUS	stop_codon	14818	14820	.	-	0	transcript_id "Ledus.C22G000400.t1"; gene_id "Ledus.C22G000400"
Ledus.C22	AUGUSTUS	CDS	14821	15747	0.16	-	0	transcript_id "Ledus.C22G000400.t1"; gene_id "Ledus.C22G000400"
Ledus.C22	AUGUSTUS	exon	14821	15747	.	-	.	transcript_id "Ledus.C22G000400.t1"; gene_id "Ledus.C22G000400"
Ledus.C22	AUGUSTUS	start_codon	15745	15747	.	-	0	transcript_id "Ledus.C22G000400.t1"; gene_id "Ledus.C22G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11323.t1 is derived from g4941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3586430	3588118	.	-	.	Ledus.S4G047900
Ledus.S4	AUGUSTUS	transcript	3586430	3588118	.	-	.	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	stop_codon	3586427	3586429	.	-	0	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	CDS	3586430	3586670	0.84	-	1	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	exon	3586430	3586670	.	-	.	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	intron	3586671	3586760	.	-	.	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	CDS	3586761	3586810	0.99	-	0	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	exon	3586761	3586810	.	-	.	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	intron	3586811	3586904	.	-	.	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	CDS	3586905	3587049	1	-	1	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	exon	3586905	3587049	.	-	.	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	intron	3587050	3587381	.	-	.	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	CDS	3587382	3587535	1	-	2	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	exon	3587382	3587535	.	-	.	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	intron	3587536	3587651	.	-	.	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	CDS	3587652	3587914	1	-	1	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	exon	3587652	3587914	.	-	.	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	intron	3587915	3588071	.	-	.	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	CDS	3588072	3588118	0.84	-	0	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	exon	3588072	3588118	.	-	.	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
Ledus.S4	AUGUSTUS	start_codon	3588116	3588118	.	-	0	transcript_id "Ledus.S4G047900.t1"; gene_id "Ledus.S4G047900"
# This transcript jg3546.t2 is derived from g982.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3547.t1 is derived from g983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9385326	9387871	.	+	.	Ledus.S1G096800
Ledus.S1	AUGUSTUS	transcript	9385326	9387871	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	start_codon	9385326	9385328	.	+	0	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	CDS	9385326	9385550	0.99	+	0	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	exon	9385326	9385550	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	intron	9385551	9385648	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	CDS	9385649	9385750	1	+	0	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	exon	9385649	9385750	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	intron	9385751	9385851	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	CDS	9385852	9385902	1	+	0	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	exon	9385852	9385902	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	intron	9385903	9385974	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	CDS	9385975	9386095	1	+	0	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	exon	9385975	9386095	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	intron	9386096	9386176	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	CDS	9386177	9386301	1	+	2	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	exon	9386177	9386301	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	intron	9386302	9386388	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	CDS	9386389	9386490	1	+	0	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	exon	9386389	9386490	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	intron	9386491	9386639	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	CDS	9386640	9386714	1	+	0	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	exon	9386640	9386714	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	intron	9386715	9386795	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	CDS	9386796	9386875	1	+	0	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	exon	9386796	9386875	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	intron	9386876	9386971	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	CDS	9386972	9387167	1	+	1	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	exon	9386972	9387167	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	intron	9387168	9387296	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	CDS	9387297	9387398	1	+	0	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	exon	9387297	9387398	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	intron	9387399	9387487	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	CDS	9387488	9387871	0.94	+	0	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	exon	9387488	9387871	.	+	.	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
Ledus.S1	AUGUSTUS	stop_codon	9387872	9387874	.	+	0	transcript_id "Ledus.S1G096800.t1"; gene_id "Ledus.S1G096800"
# This transcript jg11801.t2 is derived from g5420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11802.t1 is derived from g5421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6854245	6855520	.	+	.	Ledus.S4G095800
Ledus.S4	AUGUSTUS	transcript	6854245	6855520	.	+	.	transcript_id "Ledus.S4G095800.t1"; gene_id "Ledus.S4G095800"
Ledus.S4	AUGUSTUS	start_codon	6854245	6854247	.	+	0	transcript_id "Ledus.S4G095800.t1"; gene_id "Ledus.S4G095800"
Ledus.S4	AUGUSTUS	CDS	6854245	6854605	0.8	+	0	transcript_id "Ledus.S4G095800.t1"; gene_id "Ledus.S4G095800"
Ledus.S4	AUGUSTUS	exon	6854245	6854605	.	+	.	transcript_id "Ledus.S4G095800.t1"; gene_id "Ledus.S4G095800"
Ledus.S4	AUGUSTUS	intron	6854606	6854743	.	+	.	transcript_id "Ledus.S4G095800.t1"; gene_id "Ledus.S4G095800"
Ledus.S4	AUGUSTUS	CDS	6854744	6855056	0.52	+	2	transcript_id "Ledus.S4G095800.t1"; gene_id "Ledus.S4G095800"
Ledus.S4	AUGUSTUS	exon	6854744	6855056	.	+	.	transcript_id "Ledus.S4G095800.t1"; gene_id "Ledus.S4G095800"
Ledus.S4	AUGUSTUS	intron	6855057	6855426	.	+	.	transcript_id "Ledus.S4G095800.t1"; gene_id "Ledus.S4G095800"
Ledus.S4	AUGUSTUS	CDS	6855427	6855520	0.97	+	1	transcript_id "Ledus.S4G095800.t1"; gene_id "Ledus.S4G095800"
Ledus.S4	AUGUSTUS	exon	6855427	6855520	.	+	.	transcript_id "Ledus.S4G095800.t1"; gene_id "Ledus.S4G095800"
Ledus.S4	AUGUSTUS	stop_codon	6855521	6855523	.	+	0	transcript_id "Ledus.S4G095800.t1"; gene_id "Ledus.S4G095800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2572.t1 is derived from g9435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19032696	19034849	.	-	.	Ledus.S2G245400
Ledus.S2	AUGUSTUS	transcript	19032696	19034849	.	-	.	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	stop_codon	19032693	19032695	.	-	0	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	CDS	19032696	19033256	0.98	-	0	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	exon	19032696	19033256	.	-	.	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	intron	19033257	19033355	.	-	.	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	CDS	19033356	19033432	0.93	-	2	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	exon	19033356	19033432	.	-	.	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	intron	19033433	19033540	.	-	.	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	CDS	19033541	19034039	0.9	-	0	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	exon	19033541	19034039	.	-	.	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	intron	19034040	19034143	.	-	.	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	CDS	19034144	19034418	1	-	2	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	exon	19034144	19034418	.	-	.	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	intron	19034419	19034511	.	-	.	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	CDS	19034512	19034628	1	-	2	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	exon	19034512	19034628	.	-	.	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	intron	19034629	19034764	.	-	.	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	CDS	19034765	19034849	0.99	-	0	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	exon	19034765	19034849	.	-	.	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
Ledus.S2	AUGUSTUS	start_codon	19034847	19034849	.	-	0	transcript_id "Ledus.S2G245400.t1"; gene_id "Ledus.S2G245400"
# This transcript jg10338.t2 is derived from g11368.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10338.t3 is derived from g11368.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10339.t1 is derived from g11369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14325740	14326654	.	+	.	Ledus.S3G181600
Ledus.S3	AUGUSTUS	transcript	14325740	14326654	.	+	.	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	start_codon	14325740	14325742	.	+	0	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	CDS	14325740	14325858	0.41	+	0	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	exon	14325740	14325858	.	+	.	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	intron	14325859	14326014	.	+	.	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	CDS	14326015	14326120	1	+	1	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	exon	14326015	14326120	.	+	.	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	intron	14326121	14326195	.	+	.	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	CDS	14326196	14326245	1	+	0	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	exon	14326196	14326245	.	+	.	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	intron	14326246	14326425	.	+	.	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	CDS	14326426	14326471	0.55	+	1	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	exon	14326426	14326471	.	+	.	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	intron	14326472	14326591	.	+	.	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	CDS	14326592	14326654	0.8	+	0	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	exon	14326592	14326654	.	+	.	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
Ledus.S3	AUGUSTUS	stop_codon	14326655	14326657	.	+	0	transcript_id "Ledus.S3G181600.t1"; gene_id "Ledus.S3G181600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5521.t1 is derived from g2960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24850181	24855030	.	-	.	Ledus.S1G294200
Ledus.S1	AUGUSTUS	transcript	24850181	24855030	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	stop_codon	24850178	24850180	.	-	0	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24850181	24850984	1	-	0	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24850181	24850984	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24850985	24851070	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24851071	24851175	1	-	0	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24851071	24851175	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24851176	24851265	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24851266	24851429	1	-	2	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24851266	24851429	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24851430	24851521	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24851522	24851559	1	-	1	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24851522	24851559	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24851560	24851646	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24851647	24851862	1	-	1	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24851647	24851862	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24851863	24851961	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24851962	24852123	1	-	1	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24851962	24852123	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24852124	24852259	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24852260	24852545	1	-	2	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24852260	24852545	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24852546	24852629	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24852630	24852800	0.98	-	2	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24852630	24852800	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24852801	24852907	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24852908	24852994	0.96	-	2	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24852908	24852994	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24852995	24853109	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24853110	24853209	0.86	-	0	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24853110	24853209	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24853210	24853308	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24853309	24853418	1	-	2	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24853309	24853418	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24853419	24853507	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24853508	24853670	1	-	0	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24853508	24853670	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24853671	24853758	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24853759	24854058	1	-	0	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24853759	24854058	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24854059	24854168	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24854169	24854464	1	-	2	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24854169	24854464	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	intron	24854465	24854615	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	CDS	24854616	24855030	0.99	-	0	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	exon	24854616	24855030	.	-	.	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
Ledus.S1	AUGUSTUS	start_codon	24855028	24855030	.	-	0	transcript_id "Ledus.S1G294200.t1"; gene_id "Ledus.S1G294200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5357.t1 is derived from g2796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23631542	23632130	.	+	.	Ledus.S1G277800
Ledus.S1	AUGUSTUS	transcript	23631542	23632130	.	+	.	transcript_id "Ledus.S1G277800.t1"; gene_id "Ledus.S1G277800"
Ledus.S1	AUGUSTUS	start_codon	23631542	23631544	.	+	0	transcript_id "Ledus.S1G277800.t1"; gene_id "Ledus.S1G277800"
Ledus.S1	AUGUSTUS	CDS	23631542	23631733	0.92	+	0	transcript_id "Ledus.S1G277800.t1"; gene_id "Ledus.S1G277800"
Ledus.S1	AUGUSTUS	exon	23631542	23631733	.	+	.	transcript_id "Ledus.S1G277800.t1"; gene_id "Ledus.S1G277800"
Ledus.S1	AUGUSTUS	intron	23631734	23631857	.	+	.	transcript_id "Ledus.S1G277800.t1"; gene_id "Ledus.S1G277800"
Ledus.S1	AUGUSTUS	CDS	23631858	23632130	0.98	+	0	transcript_id "Ledus.S1G277800.t1"; gene_id "Ledus.S1G277800"
Ledus.S1	AUGUSTUS	exon	23631858	23632130	.	+	.	transcript_id "Ledus.S1G277800.t1"; gene_id "Ledus.S1G277800"
Ledus.S1	AUGUSTUS	stop_codon	23632131	23632133	.	+	0	transcript_id "Ledus.S1G277800.t1"; gene_id "Ledus.S1G277800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10281.t1 is derived from g11311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14000681	14000980	.	+	.	Ledus.S3G175800
Ledus.S3	AUGUSTUS	transcript	14000681	14000980	.	+	.	transcript_id "Ledus.S3G175800.t1"; gene_id "Ledus.S3G175800"
Ledus.S3	AUGUSTUS	start_codon	14000681	14000683	.	+	0	transcript_id "Ledus.S3G175800.t1"; gene_id "Ledus.S3G175800"
Ledus.S3	AUGUSTUS	CDS	14000681	14000980	0.55	+	0	transcript_id "Ledus.S3G175800.t1"; gene_id "Ledus.S3G175800"
Ledus.S3	AUGUSTUS	exon	14000681	14000980	.	+	.	transcript_id "Ledus.S3G175800.t1"; gene_id "Ledus.S3G175800"
Ledus.S3	AUGUSTUS	stop_codon	14000981	14000983	.	+	0	transcript_id "Ledus.S3G175800.t1"; gene_id "Ledus.S3G175800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4854.t1 is derived from g2292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20226522	20228463	.	-	.	Ledus.S1G227500
Ledus.S1	AUGUSTUS	transcript	20226522	20228463	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	stop_codon	20226519	20226521	.	-	0	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	CDS	20226522	20226540	0.99	-	1	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	exon	20226522	20226540	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	intron	20226541	20226822	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	CDS	20226823	20226914	0.95	-	0	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	exon	20226823	20226914	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	intron	20226915	20227258	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	CDS	20227259	20227288	0.51	-	0	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	exon	20227259	20227288	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	intron	20227289	20227452	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	CDS	20227453	20227534	0.53	-	1	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	exon	20227453	20227534	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	intron	20227535	20227655	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	CDS	20227656	20227753	0.52	-	0	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	exon	20227656	20227753	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	intron	20227754	20227954	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	CDS	20227955	20228035	1	-	0	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	exon	20227955	20228035	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	intron	20228036	20228183	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	CDS	20228184	20228275	1	-	2	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	exon	20228184	20228275	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	intron	20228276	20228432	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	CDS	20228433	20228463	0.67	-	0	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	exon	20228433	20228463	.	-	.	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
Ledus.S1	AUGUSTUS	start_codon	20228461	20228463	.	-	0	transcript_id "Ledus.S1G227500.t1"; gene_id "Ledus.S1G227500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9903.t1 is derived from g10933.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11070052	11072789	.	+	.	Ledus.S3G138000
Ledus.S3	AUGUSTUS	transcript	11070052	11072789	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	start_codon	11070052	11070054	.	+	0	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11070052	11070070	0.93	+	0	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11070052	11070070	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11070071	11070159	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11070160	11070287	0.93	+	2	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11070160	11070287	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11070288	11070381	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11070382	11070463	1	+	0	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11070382	11070463	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11070464	11070750	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11070751	11070886	1	+	2	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11070751	11070886	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11070887	11071058	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11071059	11071331	0.81	+	1	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11071059	11071331	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11071332	11071441	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11071442	11071595	0.81	+	1	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11071442	11071595	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11071596	11071680	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11071681	11071920	1	+	0	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11071681	11071920	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11071921	11072014	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11072015	11072147	1	+	0	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11072015	11072147	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11072148	11072225	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11072226	11072407	1	+	2	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11072226	11072407	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11072408	11072489	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11072490	11072602	1	+	0	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11072490	11072602	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11072603	11072683	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11072684	11072789	1	+	1	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11072684	11072789	.	+	.	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	stop_codon	11072790	11072792	.	+	0	transcript_id "Ledus.S3G138000.t1"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	transcript	11070052	11072789	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	start_codon	11070052	11070054	.	+	0	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11070052	11070070	0.89	+	0	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11070052	11070070	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11070071	11070159	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11070160	11070287	0.89	+	2	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11070160	11070287	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11070288	11070381	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11070382	11070463	1	+	0	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11070382	11070463	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11070464	11070750	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11070751	11070886	1	+	2	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11070751	11070886	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11070887	11071058	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11071059	11071331	0.76	+	1	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11071059	11071331	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11071332	11071441	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11071442	11071595	0.8	+	1	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11071442	11071595	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11071596	11071680	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11071681	11071920	1	+	0	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11071681	11071920	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11071921	11072014	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11072015	11072147	1	+	0	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11072015	11072147	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11072148	11072234	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11072235	11072407	0.99	+	2	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11072235	11072407	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11072408	11072489	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11072490	11072602	1	+	0	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11072490	11072602	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	intron	11072603	11072683	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	CDS	11072684	11072789	1	+	1	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	exon	11072684	11072789	.	+	.	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
Ledus.S3	AUGUSTUS	stop_codon	11072790	11072792	.	+	0	transcript_id "Ledus.S3G138000.t2"; gene_id "Ledus.S3G138000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12227.t1 is derived from g5846.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10500296	10505576	.	-	.	Ledus.S4G138300
Ledus.S4	AUGUSTUS	transcript	10500296	10505576	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	stop_codon	10500293	10500295	.	-	0	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10500296	10500330	0.52	-	2	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10500296	10500330	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10500331	10500537	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10500538	10500782	0.61	-	1	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10500538	10500782	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10500783	10500890	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10500891	10502421	0.98	-	2	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10500891	10502421	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10502422	10502510	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10502511	10502572	1	-	1	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10502511	10502572	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10502573	10502694	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10502695	10502767	1	-	2	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10502695	10502767	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10502768	10502839	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10502840	10502907	1	-	1	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10502840	10502907	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10502908	10503000	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10503001	10503185	1	-	0	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10503001	10503185	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10503186	10503336	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10503337	10503478	1	-	1	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10503337	10503478	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10503479	10503580	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10503581	10503619	1	-	1	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10503581	10503619	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10503620	10503749	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10503750	10503805	0.84	-	0	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10503750	10503805	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10503806	10503906	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10503907	10503960	0.8	-	0	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10503907	10503960	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10503961	10504062	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10504063	10504166	1	-	2	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10504063	10504166	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10504167	10504259	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10504260	10504363	1	-	1	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10504260	10504363	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10504364	10504505	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10504506	10504588	1	-	0	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10504506	10504588	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10504589	10504709	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10504710	10504831	1	-	2	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10504710	10504831	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10504832	10504916	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10504917	10504996	0.81	-	1	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10504917	10504996	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10504997	10505136	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10505137	10505171	0.81	-	0	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10505137	10505171	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10505172	10505259	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10505260	10505373	0.92	-	0	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10505260	10505373	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	intron	10505374	10505483	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	CDS	10505484	10505576	0.61	-	0	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	exon	10505484	10505576	.	-	.	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
Ledus.S4	AUGUSTUS	start_codon	10505574	10505576	.	-	0	transcript_id "Ledus.S4G138300.t1"; gene_id "Ledus.S4G138300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1683.t1 is derived from g8544.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11823798	11825657	.	+	.	Ledus.S2G156500
Ledus.S2	AUGUSTUS	transcript	11823798	11825657	.	+	.	transcript_id "Ledus.S2G156500.t1"; gene_id "Ledus.S2G156500"
Ledus.S2	AUGUSTUS	start_codon	11823798	11823800	.	+	0	transcript_id "Ledus.S2G156500.t1"; gene_id "Ledus.S2G156500"
Ledus.S2	AUGUSTUS	CDS	11823798	11825657	0.55	+	0	transcript_id "Ledus.S2G156500.t1"; gene_id "Ledus.S2G156500"
Ledus.S2	AUGUSTUS	exon	11823798	11825657	.	+	.	transcript_id "Ledus.S2G156500.t1"; gene_id "Ledus.S2G156500"
Ledus.S2	AUGUSTUS	stop_codon	11825658	11825660	.	+	0	transcript_id "Ledus.S2G156500.t1"; gene_id "Ledus.S2G156500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4743.t1 is derived from g2181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19509333	19515982	.	-	.	Ledus.S1G216400
Ledus.S1	AUGUSTUS	transcript	19509333	19515982	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	stop_codon	19509330	19509332	.	-	0	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19509333	19509451	1	-	2	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19509333	19509451	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19509452	19509609	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19509610	19509717	0.96	-	2	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19509610	19509717	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19509718	19510205	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19510206	19510331	0.86	-	2	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19510206	19510331	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19510332	19510478	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19510479	19510566	1	-	0	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19510479	19510566	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19510567	19510738	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19510739	19510861	1	-	0	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19510739	19510861	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19510862	19510954	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19510955	19511102	1	-	1	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19510955	19511102	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19511103	19511210	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19511211	19511374	0.67	-	0	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19511211	19511374	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19511375	19511457	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19511458	19511610	1	-	0	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19511458	19511610	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19511611	19511750	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19511751	19511855	1	-	0	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19511751	19511855	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19511856	19511956	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19511957	19514698	0.96	-	0	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19511957	19514698	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19514699	19514788	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19514789	19515300	0.96	-	2	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19514789	19515300	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19515301	19515561	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19515562	19515982	0.62	-	0	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19515562	19515982	.	-	.	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	start_codon	19515980	19515982	.	-	0	transcript_id "Ledus.S1G216400.t1"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	transcript	19509400	19515982	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	stop_codon	19509397	19509399	.	-	0	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19509400	19509451	0.96	-	1	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19509400	19509451	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19509452	19509605	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19509606	19509717	0.91	-	2	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19509606	19509717	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19509718	19510205	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19510206	19510331	0.91	-	2	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19510206	19510331	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19510332	19510478	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19510479	19510566	1	-	0	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19510479	19510566	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19510567	19510738	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19510739	19510861	1	-	0	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19510739	19510861	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19510862	19510954	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19510955	19511102	1	-	1	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19510955	19511102	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19511103	19511210	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19511211	19511374	0.78	-	0	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19511211	19511374	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19511375	19511457	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19511458	19511610	1	-	0	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19511458	19511610	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19511611	19511750	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19511751	19511855	1	-	0	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19511751	19511855	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19511856	19511956	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19511957	19514698	0.92	-	0	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19511957	19514698	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19514699	19514788	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19514789	19515300	0.92	-	2	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19514789	19515300	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19515301	19515561	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19515562	19515982	0.6	-	0	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19515562	19515982	.	-	.	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	start_codon	19515980	19515982	.	-	0	transcript_id "Ledus.S1G216400.t2"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	transcript	19509333	19515982	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	stop_codon	19509330	19509332	.	-	0	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19509333	19509451	1	-	2	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19509333	19509451	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19509452	19509609	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19509610	19509717	0.93	-	2	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19509610	19509717	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19509718	19510205	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19510206	19510331	0.83	-	2	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19510206	19510331	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19510332	19510478	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19510479	19510566	1	-	0	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19510479	19510566	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19510567	19510738	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19510739	19510861	1	-	0	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19510739	19510861	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19510862	19510954	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19510955	19511102	1	-	1	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19510955	19511102	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19511103	19511210	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19511211	19511374	0.74	-	0	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19511211	19511374	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19511375	19511457	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19511458	19511610	1	-	0	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19511458	19511610	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19511611	19511750	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19511751	19511855	1	-	0	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19511751	19511855	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19511856	19511956	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19511957	19514698	0.91	-	0	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19511957	19514698	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19514699	19514788	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19514789	19515291	0.91	-	2	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19514789	19515291	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	intron	19515292	19515561	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	CDS	19515562	19515982	0.67	-	0	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	exon	19515562	19515982	.	-	.	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
Ledus.S1	AUGUSTUS	start_codon	19515980	19515982	.	-	0	transcript_id "Ledus.S1G216400.t3"; gene_id "Ledus.S1G216400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2341.t1 is derived from g9204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17358335	17360576	.	+	.	Ledus.S2G222300
Ledus.S2	AUGUSTUS	transcript	17358335	17360576	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	start_codon	17358335	17358337	.	+	0	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	CDS	17358335	17358647	0.94	+	0	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	exon	17358335	17358647	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	intron	17358648	17358735	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	CDS	17358736	17359022	1	+	2	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	exon	17358736	17359022	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	intron	17359023	17359105	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	CDS	17359106	17359202	1	+	0	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	exon	17359106	17359202	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	intron	17359203	17359306	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	CDS	17359307	17359647	1	+	2	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	exon	17359307	17359647	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	intron	17359648	17359733	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	CDS	17359734	17359884	1	+	0	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	exon	17359734	17359884	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	intron	17359885	17359975	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	CDS	17359976	17360139	1	+	2	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	exon	17359976	17360139	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	intron	17360140	17360243	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	CDS	17360244	17360576	0.93	+	0	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	exon	17360244	17360576	.	+	.	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
Ledus.S2	AUGUSTUS	stop_codon	17360577	17360579	.	+	0	transcript_id "Ledus.S2G222300.t1"; gene_id "Ledus.S2G222300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3648.t1 is derived from g1084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10373703	10378162	.	+	.	Ledus.S1G106900
Ledus.S1	AUGUSTUS	transcript	10373703	10378162	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	start_codon	10373703	10373705	.	+	0	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	CDS	10373703	10374048	0.6	+	0	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	exon	10373703	10374048	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	intron	10374049	10374169	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	CDS	10374170	10375380	0.98	+	2	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	exon	10374170	10375380	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	intron	10375381	10375495	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	CDS	10375496	10375820	0.98	+	0	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	exon	10375496	10375820	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	intron	10375821	10376014	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	CDS	10376015	10376197	1	+	2	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	exon	10376015	10376197	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	intron	10376198	10376286	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	CDS	10376287	10376570	1	+	2	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	exon	10376287	10376570	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	intron	10376571	10376651	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	CDS	10376652	10376768	1	+	0	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	exon	10376652	10376768	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	intron	10376769	10376909	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	CDS	10376910	10377181	1	+	0	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	exon	10376910	10377181	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	intron	10377182	10377267	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	CDS	10377268	10377454	0.97	+	1	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	exon	10377268	10377454	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	intron	10377455	10377567	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	CDS	10377568	10377846	0.97	+	0	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	exon	10377568	10377846	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	intron	10377847	10377943	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	CDS	10377944	10378162	0.93	+	0	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	exon	10377944	10378162	.	+	.	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
Ledus.S1	AUGUSTUS	stop_codon	10378163	10378165	.	+	0	transcript_id "Ledus.S1G106900.t1"; gene_id "Ledus.S1G106900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3257.t1 is derived from g692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7149181	7150638	.	+	.	Ledus.S1G067800
Ledus.S1	AUGUSTUS	transcript	7149181	7150638	.	+	.	transcript_id "Ledus.S1G067800.t1"; gene_id "Ledus.S1G067800"
Ledus.S1	AUGUSTUS	start_codon	7149181	7149183	.	+	0	transcript_id "Ledus.S1G067800.t1"; gene_id "Ledus.S1G067800"
Ledus.S1	AUGUSTUS	CDS	7149181	7150638	0.74	+	0	transcript_id "Ledus.S1G067800.t1"; gene_id "Ledus.S1G067800"
Ledus.S1	AUGUSTUS	exon	7149181	7150638	.	+	.	transcript_id "Ledus.S1G067800.t1"; gene_id "Ledus.S1G067800"
Ledus.S1	AUGUSTUS	stop_codon	7150639	7150641	.	+	0	transcript_id "Ledus.S1G067800.t1"; gene_id "Ledus.S1G067800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10322.t1 is derived from g11352.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14224906	14227082	.	-	.	Ledus.S3G179900
Ledus.S3	AUGUSTUS	transcript	14224906	14227082	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	stop_codon	14224903	14224905	.	-	0	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14224906	14225008	0.96	-	1	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14224906	14225008	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14225009	14225087	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14225088	14225149	1	-	0	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14225088	14225149	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14225150	14225237	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14225238	14225285	1	-	0	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14225238	14225285	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14225286	14225393	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14225394	14225435	1	-	0	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14225394	14225435	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14225436	14225519	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14225520	14226590	0.41	-	0	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14225520	14226590	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14226591	14226675	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14226676	14226712	0.47	-	1	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14226676	14226712	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14226713	14226843	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14226844	14226893	1	-	0	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14226844	14226893	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14226894	14226980	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14226981	14227082	0.49	-	0	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14226981	14227082	.	-	.	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	start_codon	14227080	14227082	.	-	0	transcript_id "Ledus.S3G179900.t1"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	transcript	14224906	14227082	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	stop_codon	14224903	14224905	.	-	0	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14224906	14225008	0.99	-	1	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14224906	14225008	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14225009	14225087	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14225088	14225149	1	-	0	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14225088	14225149	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14225150	14225237	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14225238	14225285	1	-	0	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14225238	14225285	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14225286	14225393	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14225394	14225435	1	-	0	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14225394	14225435	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14225436	14225519	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14225520	14226590	0.43	-	0	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14225520	14226590	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14226591	14226675	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14226676	14226727	0.29	-	1	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14226676	14226727	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14226728	14226843	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14226844	14226893	0.96	-	0	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14226844	14226893	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	intron	14226894	14226980	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	CDS	14226981	14227082	0.53	-	0	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	exon	14226981	14227082	.	-	.	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
Ledus.S3	AUGUSTUS	start_codon	14227080	14227082	.	-	0	transcript_id "Ledus.S3G179900.t2"; gene_id "Ledus.S3G179900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11596.t1 is derived from g5214.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5443634	5443963	.	-	.	Ledus.S4G075200
Ledus.S4	AUGUSTUS	transcript	5443634	5443963	.	-	.	transcript_id "Ledus.S4G075200.t1"; gene_id "Ledus.S4G075200"
Ledus.S4	AUGUSTUS	stop_codon	5443631	5443633	.	-	0	transcript_id "Ledus.S4G075200.t1"; gene_id "Ledus.S4G075200"
Ledus.S4	AUGUSTUS	CDS	5443634	5443963	0.79	-	0	transcript_id "Ledus.S4G075200.t1"; gene_id "Ledus.S4G075200"
Ledus.S4	AUGUSTUS	exon	5443634	5443963	.	-	.	transcript_id "Ledus.S4G075200.t1"; gene_id "Ledus.S4G075200"
Ledus.S4	AUGUSTUS	start_codon	5443961	5443963	.	-	0	transcript_id "Ledus.S4G075200.t1"; gene_id "Ledus.S4G075200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3249.t1 is derived from g684.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7128182	7130045	.	+	.	Ledus.S1G067000
Ledus.S1	AUGUSTUS	transcript	7128182	7130045	.	+	.	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	start_codon	7128182	7128184	.	+	0	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	CDS	7128182	7128415	0.97	+	0	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	exon	7128182	7128415	.	+	.	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	intron	7128416	7128713	.	+	.	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	CDS	7128714	7128813	1	+	0	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	exon	7128714	7128813	.	+	.	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	intron	7128814	7129155	.	+	.	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	CDS	7129156	7129213	1	+	2	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	exon	7129156	7129213	.	+	.	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	intron	7129214	7129332	.	+	.	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	CDS	7129333	7129439	1	+	1	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	exon	7129333	7129439	.	+	.	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	intron	7129440	7129577	.	+	.	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	CDS	7129578	7129835	1	+	2	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	exon	7129578	7129835	.	+	.	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	intron	7129836	7130007	.	+	.	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	CDS	7130008	7130045	1	+	2	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	exon	7130008	7130045	.	+	.	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
Ledus.S1	AUGUSTUS	stop_codon	7130046	7130048	.	+	0	transcript_id "Ledus.S1G067000.t1"; gene_id "Ledus.S1G067000"
# This transcript jg3867.t2 is derived from g1303.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3868.t1 is derived from g1304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13269639	13270571	.	-	.	Ledus.S1G128900
Ledus.S1	AUGUSTUS	transcript	13269639	13270571	.	-	.	transcript_id "Ledus.S1G128900.t1"; gene_id "Ledus.S1G128900"
Ledus.S1	AUGUSTUS	stop_codon	13269636	13269638	.	-	0	transcript_id "Ledus.S1G128900.t1"; gene_id "Ledus.S1G128900"
Ledus.S1	AUGUSTUS	CDS	13269639	13270071	0.99	-	1	transcript_id "Ledus.S1G128900.t1"; gene_id "Ledus.S1G128900"
Ledus.S1	AUGUSTUS	exon	13269639	13270071	.	-	.	transcript_id "Ledus.S1G128900.t1"; gene_id "Ledus.S1G128900"
Ledus.S1	AUGUSTUS	intron	13270072	13270344	.	-	.	transcript_id "Ledus.S1G128900.t1"; gene_id "Ledus.S1G128900"
Ledus.S1	AUGUSTUS	CDS	13270345	13270571	0.85	-	0	transcript_id "Ledus.S1G128900.t1"; gene_id "Ledus.S1G128900"
Ledus.S1	AUGUSTUS	exon	13270345	13270571	.	-	.	transcript_id "Ledus.S1G128900.t1"; gene_id "Ledus.S1G128900"
Ledus.S1	AUGUSTUS	start_codon	13270569	13270571	.	-	0	transcript_id "Ledus.S1G128900.t1"; gene_id "Ledus.S1G128900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5161.t1 is derived from g2600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22038786	22040072	.	+	.	Ledus.S1G258200
Ledus.S1	AUGUSTUS	transcript	22038786	22040072	.	+	.	transcript_id "Ledus.S1G258200.t1"; gene_id "Ledus.S1G258200"
Ledus.S1	AUGUSTUS	start_codon	22038786	22038788	.	+	0	transcript_id "Ledus.S1G258200.t1"; gene_id "Ledus.S1G258200"
Ledus.S1	AUGUSTUS	CDS	22038786	22040072	0.92	+	0	transcript_id "Ledus.S1G258200.t1"; gene_id "Ledus.S1G258200"
Ledus.S1	AUGUSTUS	exon	22038786	22040072	.	+	.	transcript_id "Ledus.S1G258200.t1"; gene_id "Ledus.S1G258200"
Ledus.S1	AUGUSTUS	stop_codon	22040073	22040075	.	+	0	transcript_id "Ledus.S1G258200.t1"; gene_id "Ledus.S1G258200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1523.t1 is derived from g8384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10782772	10784229	.	+	.	Ledus.S2G140500
Ledus.S2	AUGUSTUS	transcript	10782772	10784229	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	start_codon	10782772	10782774	.	+	0	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	CDS	10782772	10782851	0.87	+	0	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	exon	10782772	10782851	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	intron	10782852	10783011	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	CDS	10783012	10783117	0.87	+	1	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	exon	10783012	10783117	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	intron	10783118	10783204	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	CDS	10783205	10783240	1	+	0	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	exon	10783205	10783240	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	intron	10783241	10783332	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	CDS	10783333	10783470	0.96	+	0	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	exon	10783333	10783470	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	intron	10783471	10783589	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	CDS	10783590	10783676	0.96	+	0	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	exon	10783590	10783676	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	intron	10783677	10783780	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	CDS	10783781	10783828	0.94	+	0	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	exon	10783781	10783828	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	intron	10783829	10783916	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	CDS	10783917	10783993	1	+	0	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	exon	10783917	10783993	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	intron	10783994	10784093	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	CDS	10784094	10784229	0.99	+	1	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	exon	10784094	10784229	.	+	.	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
Ledus.S2	AUGUSTUS	stop_codon	10784230	10784232	.	+	0	transcript_id "Ledus.S2G140500.t1"; gene_id "Ledus.S2G140500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2274.t1 is derived from g9137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16878781	16879503	.	-	.	Ledus.S2G215600
Ledus.S2	AUGUSTUS	transcript	16878781	16879503	.	-	.	transcript_id "Ledus.S2G215600.t1"; gene_id "Ledus.S2G215600"
Ledus.S2	AUGUSTUS	stop_codon	16878778	16878780	.	-	0	transcript_id "Ledus.S2G215600.t1"; gene_id "Ledus.S2G215600"
Ledus.S2	AUGUSTUS	CDS	16878781	16879028	0.89	-	2	transcript_id "Ledus.S2G215600.t1"; gene_id "Ledus.S2G215600"
Ledus.S2	AUGUSTUS	exon	16878781	16879028	.	-	.	transcript_id "Ledus.S2G215600.t1"; gene_id "Ledus.S2G215600"
Ledus.S2	AUGUSTUS	intron	16879029	16879358	.	-	.	transcript_id "Ledus.S2G215600.t1"; gene_id "Ledus.S2G215600"
Ledus.S2	AUGUSTUS	CDS	16879359	16879503	0.76	-	0	transcript_id "Ledus.S2G215600.t1"; gene_id "Ledus.S2G215600"
Ledus.S2	AUGUSTUS	exon	16879359	16879503	.	-	.	transcript_id "Ledus.S2G215600.t1"; gene_id "Ledus.S2G215600"
Ledus.S2	AUGUSTUS	start_codon	16879501	16879503	.	-	0	transcript_id "Ledus.S2G215600.t1"; gene_id "Ledus.S2G215600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5036.t1 is derived from g2475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21238195	21238908	.	+	.	Ledus.S1G245700
Ledus.S1	AUGUSTUS	transcript	21238195	21238908	.	+	.	transcript_id "Ledus.S1G245700.t1"; gene_id "Ledus.S1G245700"
Ledus.S1	AUGUSTUS	start_codon	21238195	21238197	.	+	0	transcript_id "Ledus.S1G245700.t1"; gene_id "Ledus.S1G245700"
Ledus.S1	AUGUSTUS	CDS	21238195	21238252	1	+	0	transcript_id "Ledus.S1G245700.t1"; gene_id "Ledus.S1G245700"
Ledus.S1	AUGUSTUS	exon	21238195	21238252	.	+	.	transcript_id "Ledus.S1G245700.t1"; gene_id "Ledus.S1G245700"
Ledus.S1	AUGUSTUS	intron	21238253	21238345	.	+	.	transcript_id "Ledus.S1G245700.t1"; gene_id "Ledus.S1G245700"
Ledus.S1	AUGUSTUS	CDS	21238346	21238908	1	+	2	transcript_id "Ledus.S1G245700.t1"; gene_id "Ledus.S1G245700"
Ledus.S1	AUGUSTUS	exon	21238346	21238908	.	+	.	transcript_id "Ledus.S1G245700.t1"; gene_id "Ledus.S1G245700"
Ledus.S1	AUGUSTUS	stop_codon	21238909	21238911	.	+	0	transcript_id "Ledus.S1G245700.t1"; gene_id "Ledus.S1G245700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2027.t1 is derived from g8890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14252006	14252500	.	-	.	Ledus.S2G190900
Ledus.S2	AUGUSTUS	transcript	14252006	14252500	.	-	.	transcript_id "Ledus.S2G190900.t1"; gene_id "Ledus.S2G190900"
Ledus.S2	AUGUSTUS	stop_codon	14252003	14252005	.	-	0	transcript_id "Ledus.S2G190900.t1"; gene_id "Ledus.S2G190900"
Ledus.S2	AUGUSTUS	CDS	14252006	14252500	0.8	-	0	transcript_id "Ledus.S2G190900.t1"; gene_id "Ledus.S2G190900"
Ledus.S2	AUGUSTUS	exon	14252006	14252500	.	-	.	transcript_id "Ledus.S2G190900.t1"; gene_id "Ledus.S2G190900"
Ledus.S2	AUGUSTUS	start_codon	14252498	14252500	.	-	0	transcript_id "Ledus.S2G190900.t1"; gene_id "Ledus.S2G190900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3548.t1 is derived from g984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9389131	9391674	.	+	.	Ledus.S1G096900
Ledus.S1	AUGUSTUS	transcript	9389131	9391674	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	start_codon	9389131	9389133	.	+	0	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	CDS	9389131	9389141	0.79	+	0	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	exon	9389131	9389141	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	intron	9389142	9389214	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	CDS	9389215	9389299	0.51	+	1	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	exon	9389215	9389299	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	intron	9389300	9389388	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	CDS	9389389	9389524	1	+	0	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	exon	9389389	9389524	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	intron	9389525	9389610	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	CDS	9389611	9389989	1	+	2	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	exon	9389611	9389989	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	intron	9389990	9390060	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	CDS	9390061	9391018	0.89	+	1	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	exon	9390061	9391018	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	intron	9391019	9391098	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	CDS	9391099	9391157	0.89	+	0	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	exon	9391099	9391157	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	intron	9391158	9391251	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	CDS	9391252	9391339	0.28	+	1	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	exon	9391252	9391339	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	intron	9391340	9391587	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	CDS	9391588	9391674	0.22	+	0	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	exon	9391588	9391674	.	+	.	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
Ledus.S1	AUGUSTUS	stop_codon	9391675	9391677	.	+	0	transcript_id "Ledus.S1G096900.t1"; gene_id "Ledus.S1G096900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11782.t1 is derived from g5401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6750177	6751118	.	-	.	Ledus.S4G093800
Ledus.S4	AUGUSTUS	transcript	6750177	6751118	.	-	.	transcript_id "Ledus.S4G093800.t1"; gene_id "Ledus.S4G093800"
Ledus.S4	AUGUSTUS	stop_codon	6750174	6750176	.	-	0	transcript_id "Ledus.S4G093800.t1"; gene_id "Ledus.S4G093800"
Ledus.S4	AUGUSTUS	CDS	6750177	6750293	1	-	0	transcript_id "Ledus.S4G093800.t1"; gene_id "Ledus.S4G093800"
Ledus.S4	AUGUSTUS	exon	6750177	6750293	.	-	.	transcript_id "Ledus.S4G093800.t1"; gene_id "Ledus.S4G093800"
Ledus.S4	AUGUSTUS	intron	6750294	6750368	.	-	.	transcript_id "Ledus.S4G093800.t1"; gene_id "Ledus.S4G093800"
Ledus.S4	AUGUSTUS	CDS	6750369	6751118	0.61	-	0	transcript_id "Ledus.S4G093800.t1"; gene_id "Ledus.S4G093800"
Ledus.S4	AUGUSTUS	exon	6750369	6751118	.	-	.	transcript_id "Ledus.S4G093800.t1"; gene_id "Ledus.S4G093800"
Ledus.S4	AUGUSTUS	start_codon	6751116	6751118	.	-	0	transcript_id "Ledus.S4G093800.t1"; gene_id "Ledus.S4G093800"
# This transcript jg4224.t2 is derived from g1660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4225.t1 is derived from g1661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15646490	15648273	.	-	.	Ledus.S1G164600
Ledus.S1	AUGUSTUS	transcript	15646490	15648273	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	stop_codon	15646487	15646489	.	-	0	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	CDS	15646490	15646560	0.7	-	2	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	exon	15646490	15646560	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	intron	15646561	15646907	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	CDS	15646908	15647123	0.6	-	2	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	exon	15646908	15647123	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	intron	15647124	15647344	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	CDS	15647345	15647375	0.57	-	0	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	exon	15647345	15647375	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	intron	15647376	15647456	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	CDS	15647457	15647631	0.2	-	1	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	exon	15647457	15647631	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	intron	15647632	15647755	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	CDS	15647756	15647819	0.56	-	2	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	exon	15647756	15647819	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	intron	15647820	15647910	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	CDS	15647911	15647944	0.5	-	0	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	exon	15647911	15647944	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	intron	15647945	15648195	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	CDS	15648196	15648273	0.36	-	0	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	exon	15648196	15648273	.	-	.	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
Ledus.S1	AUGUSTUS	start_codon	15648271	15648273	.	-	0	transcript_id "Ledus.S1G164600.t1"; gene_id "Ledus.S1G164600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9653.t1 is derived from g10683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8787315	8791080	.	+	.	Ledus.S3G113000
Ledus.S3	AUGUSTUS	transcript	8787315	8791080	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	start_codon	8787315	8787317	.	+	0	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	CDS	8787315	8787459	0.76	+	0	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	exon	8787315	8787459	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	intron	8787460	8787575	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	CDS	8787576	8787673	0.68	+	2	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	exon	8787576	8787673	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	intron	8787674	8787774	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	CDS	8787775	8787860	0.96	+	0	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	exon	8787775	8787860	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	intron	8787861	8788003	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	CDS	8788004	8788229	0.99	+	1	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	exon	8788004	8788229	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	intron	8788230	8788321	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	CDS	8788322	8788383	1	+	0	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	exon	8788322	8788383	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	intron	8788384	8788555	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	CDS	8788556	8790935	0.97	+	1	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	exon	8788556	8790935	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	intron	8790936	8791014	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	CDS	8791015	8791080	1	+	0	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	exon	8791015	8791080	.	+	.	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
Ledus.S3	AUGUSTUS	stop_codon	8791081	8791083	.	+	0	transcript_id "Ledus.S3G113000.t1"; gene_id "Ledus.S3G113000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6845.t1 is derived from g4289.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34613000	34616026	.	+	.	Ledus.S1G426600
Ledus.S1	AUGUSTUS	transcript	34613000	34616026	.	+	.	transcript_id "Ledus.S1G426600.t1"; gene_id "Ledus.S1G426600"
Ledus.S1	AUGUSTUS	start_codon	34613000	34613002	.	+	0	transcript_id "Ledus.S1G426600.t1"; gene_id "Ledus.S1G426600"
Ledus.S1	AUGUSTUS	CDS	34613000	34614608	0.6	+	0	transcript_id "Ledus.S1G426600.t1"; gene_id "Ledus.S1G426600"
Ledus.S1	AUGUSTUS	exon	34613000	34614608	.	+	.	transcript_id "Ledus.S1G426600.t1"; gene_id "Ledus.S1G426600"
Ledus.S1	AUGUSTUS	intron	34614609	34614854	.	+	.	transcript_id "Ledus.S1G426600.t1"; gene_id "Ledus.S1G426600"
Ledus.S1	AUGUSTUS	CDS	34614855	34616026	1	+	2	transcript_id "Ledus.S1G426600.t1"; gene_id "Ledus.S1G426600"
Ledus.S1	AUGUSTUS	exon	34614855	34616026	.	+	.	transcript_id "Ledus.S1G426600.t1"; gene_id "Ledus.S1G426600"
Ledus.S1	AUGUSTUS	stop_codon	34616027	34616029	.	+	0	transcript_id "Ledus.S1G426600.t1"; gene_id "Ledus.S1G426600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12849.t1 is derived from g11883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	210698	210940	.	+	.	Ledus.C11G001300
Ledus.C11	AUGUSTUS	transcript	210698	210940	.	+	.	transcript_id "Ledus.C11G001300.t1"; gene_id "Ledus.C11G001300"
Ledus.C11	AUGUSTUS	start_codon	210698	210700	.	+	0	transcript_id "Ledus.C11G001300.t1"; gene_id "Ledus.C11G001300"
Ledus.C11	AUGUSTUS	CDS	210698	210940	0.71	+	0	transcript_id "Ledus.C11G001300.t1"; gene_id "Ledus.C11G001300"
Ledus.C11	AUGUSTUS	exon	210698	210940	.	+	.	transcript_id "Ledus.C11G001300.t1"; gene_id "Ledus.C11G001300"
Ledus.C11	AUGUSTUS	stop_codon	210941	210943	.	+	0	transcript_id "Ledus.C11G001300.t1"; gene_id "Ledus.C11G001300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3834.t1 is derived from g1270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12958414	12960030	.	+	.	Ledus.S1G125500
Ledus.S1	AUGUSTUS	transcript	12958414	12960030	.	+	.	transcript_id "Ledus.S1G125500.t1"; gene_id "Ledus.S1G125500"
Ledus.S1	AUGUSTUS	start_codon	12958414	12958416	.	+	0	transcript_id "Ledus.S1G125500.t1"; gene_id "Ledus.S1G125500"
Ledus.S1	AUGUSTUS	CDS	12958414	12960030	0.66	+	0	transcript_id "Ledus.S1G125500.t1"; gene_id "Ledus.S1G125500"
Ledus.S1	AUGUSTUS	exon	12958414	12960030	.	+	.	transcript_id "Ledus.S1G125500.t1"; gene_id "Ledus.S1G125500"
Ledus.S1	AUGUSTUS	stop_codon	12960031	12960033	.	+	0	transcript_id "Ledus.S1G125500.t1"; gene_id "Ledus.S1G125500"
Ledus.S1	AUGUSTUS	transcript	12959392	12960030	.	+	.	transcript_id "Ledus.S1G125500.t2"; gene_id "Ledus.S1G125500"
Ledus.S1	AUGUSTUS	start_codon	12959392	12959394	.	+	0	transcript_id "Ledus.S1G125500.t2"; gene_id "Ledus.S1G125500"
Ledus.S1	AUGUSTUS	CDS	12959392	12960030	0.47	+	0	transcript_id "Ledus.S1G125500.t2"; gene_id "Ledus.S1G125500"
Ledus.S1	AUGUSTUS	exon	12959392	12960030	.	+	.	transcript_id "Ledus.S1G125500.t2"; gene_id "Ledus.S1G125500"
Ledus.S1	AUGUSTUS	stop_codon	12960031	12960033	.	+	0	transcript_id "Ledus.S1G125500.t2"; gene_id "Ledus.S1G125500"
# This transcript jg4681.t2 is derived from g2119.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4682.t1 is derived from g2120.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18975613	18979107	.	+	.	Ledus.S1G210300
Ledus.S1	AUGUSTUS	transcript	18975613	18979107	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	start_codon	18975613	18975615	.	+	0	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	CDS	18975613	18975625	1	+	0	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	exon	18975613	18975625	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	intron	18975626	18975711	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	CDS	18975712	18975776	1	+	2	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	exon	18975712	18975776	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	intron	18975777	18975856	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	CDS	18975857	18976059	0.68	+	0	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	exon	18975857	18976059	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	intron	18976060	18976259	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	CDS	18976260	18976467	0.69	+	1	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	exon	18976260	18976467	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	intron	18976468	18976616	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	CDS	18976617	18977402	1	+	0	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	exon	18976617	18977402	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	intron	18977403	18977496	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	CDS	18977497	18977793	1	+	0	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	exon	18977497	18977793	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	intron	18977794	18977890	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	CDS	18977891	18978088	1	+	0	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	exon	18977891	18978088	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	intron	18978089	18978185	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	CDS	18978186	18978320	1	+	0	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	exon	18978186	18978320	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	intron	18978321	18978433	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	CDS	18978434	18978550	1	+	0	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	exon	18978434	18978550	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	intron	18978551	18978627	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	CDS	18978628	18978786	0.98	+	0	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	exon	18978628	18978786	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	intron	18978787	18978915	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	CDS	18978916	18979107	0.91	+	0	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	exon	18978916	18979107	.	+	.	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
Ledus.S1	AUGUSTUS	stop_codon	18979108	18979110	.	+	0	transcript_id "Ledus.S1G210300.t1"; gene_id "Ledus.S1G210300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5598.t1 is derived from g3037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25319061	25319975	.	-	.	Ledus.S1G301900
Ledus.S1	AUGUSTUS	transcript	25319061	25319975	.	-	.	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	stop_codon	25319058	25319060	.	-	0	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	CDS	25319061	25319174	0.54	-	0	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	exon	25319061	25319174	.	-	.	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	intron	25319175	25319275	.	-	.	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	CDS	25319276	25319341	0.95	-	0	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	exon	25319276	25319341	.	-	.	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	intron	25319342	25319426	.	-	.	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	CDS	25319427	25319603	0.87	-	0	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	exon	25319427	25319603	.	-	.	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	intron	25319604	25319789	.	-	.	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	CDS	25319790	25319975	0.93	-	0	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	exon	25319790	25319975	.	-	.	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
Ledus.S1	AUGUSTUS	start_codon	25319973	25319975	.	-	0	transcript_id "Ledus.S1G301900.t1"; gene_id "Ledus.S1G301900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3367.t1 is derived from g802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7878493	7880612	.	-	.	Ledus.S1G078800
Ledus.S1	AUGUSTUS	transcript	7878493	7880612	.	-	.	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	stop_codon	7878490	7878492	.	-	0	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	CDS	7878493	7879040	0.52	-	2	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	exon	7878493	7879040	.	-	.	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	intron	7879041	7879162	.	-	.	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	CDS	7879163	7879280	0.58	-	0	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	exon	7879163	7879280	.	-	.	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	intron	7879281	7880048	.	-	.	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	CDS	7880049	7880102	0.72	-	0	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	exon	7880049	7880102	.	-	.	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	intron	7880103	7880257	.	-	.	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	CDS	7880258	7880285	0.32	-	1	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	exon	7880258	7880285	.	-	.	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	intron	7880286	7880457	.	-	.	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	CDS	7880458	7880612	0.34	-	0	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	exon	7880458	7880612	.	-	.	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
Ledus.S1	AUGUSTUS	start_codon	7880610	7880612	.	-	0	transcript_id "Ledus.S1G078800.t1"; gene_id "Ledus.S1G078800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2193.t1 is derived from g9056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15879234	15881842	.	-	.	Ledus.S2G207500
Ledus.S2	AUGUSTUS	transcript	15879234	15881842	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	stop_codon	15879231	15879233	.	-	0	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15879234	15879746	0.99	-	0	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15879234	15879746	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	intron	15879747	15879889	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15879890	15879950	1	-	1	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15879890	15879950	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	intron	15879951	15880042	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15880043	15880156	1	-	1	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15880043	15880156	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	intron	15880157	15881145	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15881146	15881239	1	-	2	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15881146	15881239	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	intron	15881240	15881349	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15881350	15881422	1	-	0	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15881350	15881422	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	intron	15881423	15881632	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15881633	15881670	0.5	-	2	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15881633	15881670	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	intron	15881671	15881726	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15881727	15881752	0.47	-	1	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15881727	15881752	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	intron	15881753	15881834	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15881835	15881842	0.5	-	0	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15881835	15881842	.	-	.	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	start_codon	15881840	15881842	.	-	0	transcript_id "Ledus.S2G207500.t1"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	transcript	15880998	15881842	.	-	.	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	stop_codon	15880995	15880997	.	-	0	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15880998	15881049	0.93	-	1	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15880998	15881049	.	-	.	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	intron	15881050	15881145	.	-	.	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15881146	15881239	1	-	2	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15881146	15881239	.	-	.	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	intron	15881240	15881349	.	-	.	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15881350	15881422	1	-	0	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15881350	15881422	.	-	.	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	intron	15881423	15881632	.	-	.	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15881633	15881670	0.39	-	2	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15881633	15881670	.	-	.	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	intron	15881671	15881726	.	-	.	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15881727	15881752	0.39	-	1	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15881727	15881752	.	-	.	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	intron	15881753	15881834	.	-	.	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	CDS	15881835	15881842	0.4	-	0	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	exon	15881835	15881842	.	-	.	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
Ledus.S2	AUGUSTUS	start_codon	15881840	15881842	.	-	0	transcript_id "Ledus.S2G207500.t2"; gene_id "Ledus.S2G207500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9052.t1 is derived from g10082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4225740	4227136	.	+	.	Ledus.S3G052900
Ledus.S3	AUGUSTUS	transcript	4225740	4227136	.	+	.	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	start_codon	4225740	4225742	.	+	0	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	CDS	4225740	4225958	0.7	+	0	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	exon	4225740	4225958	.	+	.	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	intron	4225959	4226038	.	+	.	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	CDS	4226039	4226242	1	+	0	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	exon	4226039	4226242	.	+	.	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	intron	4226243	4226338	.	+	.	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	CDS	4226339	4226511	0.99	+	0	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	exon	4226339	4226511	.	+	.	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	intron	4226512	4226606	.	+	.	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	CDS	4226607	4226712	1	+	1	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	exon	4226607	4226712	.	+	.	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	intron	4226713	4226809	.	+	.	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	CDS	4226810	4227136	1	+	0	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	exon	4226810	4227136	.	+	.	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
Ledus.S3	AUGUSTUS	stop_codon	4227137	4227139	.	+	0	transcript_id "Ledus.S3G052900.t1"; gene_id "Ledus.S3G052900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1045.t1 is derived from g7906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6953623	6955322	.	-	.	Ledus.S2G092700
Ledus.S2	AUGUSTUS	transcript	6953623	6955322	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	stop_codon	6953620	6953622	.	-	0	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	CDS	6953623	6953859	0.99	-	0	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	exon	6953623	6953859	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	intron	6953860	6953951	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	CDS	6953952	6954057	1	-	1	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	exon	6953952	6954057	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	intron	6954058	6954144	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	CDS	6954145	6954338	1	-	0	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	exon	6954145	6954338	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	intron	6954339	6954418	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	CDS	6954419	6954519	1	-	2	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	exon	6954419	6954519	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	intron	6954520	6954605	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	CDS	6954606	6954726	1	-	0	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	exon	6954606	6954726	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	intron	6954727	6954796	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	CDS	6954797	6955035	0.97	-	2	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	exon	6954797	6955035	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	intron	6955036	6955123	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	CDS	6955124	6955322	0.72	-	0	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	exon	6955124	6955322	.	-	.	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
Ledus.S2	AUGUSTUS	start_codon	6955320	6955322	.	-	0	transcript_id "Ledus.S2G092700.t1"; gene_id "Ledus.S2G092700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11458.t1 is derived from g5076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4412310	4418504	.	+	.	Ledus.S4G061400
Ledus.S4	AUGUSTUS	transcript	4412310	4418504	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	start_codon	4412310	4412312	.	+	0	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4412310	4412393	1	+	0	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4412310	4412393	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4412394	4412590	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4412591	4412702	1	+	0	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4412591	4412702	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4412703	4412863	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4412864	4412935	1	+	2	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4412864	4412935	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4412936	4413246	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4413247	4413348	0.53	+	2	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4413247	4413348	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4413349	4413449	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4413450	4413618	0.51	+	2	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4413450	4413618	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4413619	4413740	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4413741	4413839	1	+	1	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4413741	4413839	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4413840	4413937	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4413938	4414087	1	+	1	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4413938	4414087	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4414088	4414227	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4414228	4414267	1	+	1	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4414228	4414267	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4414268	4414377	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4414378	4414441	0.68	+	0	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4414378	4414441	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4414442	4414548	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4414549	4414634	1	+	2	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4414549	4414634	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4414635	4414770	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4414771	4414869	0.83	+	0	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4414771	4414869	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4414870	4414977	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4414978	4415093	1	+	0	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4414978	4415093	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4415094	4415216	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4415217	4415347	1	+	1	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4415217	4415347	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4415348	4415494	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4415495	4415565	1	+	2	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4415495	4415565	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4415566	4415721	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4415722	4415827	1	+	0	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4415722	4415827	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4415828	4415920	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4415921	4416060	1	+	2	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4415921	4416060	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4416061	4416331	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4416332	4416490	1	+	0	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4416332	4416490	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4416491	4416565	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4416566	4416666	1	+	0	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4416566	4416666	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4416667	4416900	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4416901	4417064	0.91	+	1	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4416901	4417064	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4417065	4417175	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4417176	4417368	0.9	+	2	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4417176	4417368	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4417369	4417494	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4417495	4417594	1	+	1	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4417495	4417594	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4417595	4417678	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4417679	4417847	1	+	0	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4417679	4417847	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4417848	4417977	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4417978	4418060	0.99	+	2	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4417978	4418060	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4418061	4418162	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4418163	4418239	0.65	+	0	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4418163	4418239	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	intron	4418240	4418335	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	CDS	4418336	4418504	1	+	1	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	exon	4418336	4418504	.	+	.	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
Ledus.S4	AUGUSTUS	stop_codon	4418505	4418507	.	+	0	transcript_id "Ledus.S4G061400.t1"; gene_id "Ledus.S4G061400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2534.t1 is derived from g9397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18734244	18739625	.	-	.	Ledus.S2G241600
Ledus.S2	AUGUSTUS	transcript	18734244	18739625	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	stop_codon	18734241	18734243	.	-	0	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	CDS	18734244	18734301	0.98	-	1	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	exon	18734244	18734301	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	intron	18734302	18735129	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	CDS	18735130	18735215	0.81	-	0	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	exon	18735130	18735215	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	intron	18735216	18735411	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	CDS	18735412	18735676	0.52	-	1	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	exon	18735412	18735676	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	intron	18735677	18735765	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	CDS	18735766	18737072	0.92	-	0	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	exon	18735766	18737072	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	intron	18737073	18737197	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	CDS	18737198	18737241	0.98	-	2	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	exon	18737198	18737241	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	intron	18737242	18737329	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	CDS	18737330	18737951	0.54	-	0	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	exon	18737330	18737951	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	intron	18737952	18738134	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	CDS	18738135	18738338	1	-	0	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	exon	18738135	18738338	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	intron	18738339	18738468	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	CDS	18738469	18738576	0.58	-	0	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	exon	18738469	18738576	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	intron	18738577	18738703	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	CDS	18738704	18738889	1	-	0	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	exon	18738704	18738889	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	intron	18738890	18738986	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	CDS	18738987	18739432	0.98	-	2	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	exon	18738987	18739432	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	intron	18739433	18739558	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	CDS	18739559	18739625	0.57	-	0	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	exon	18739559	18739625	.	-	.	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
Ledus.S2	AUGUSTUS	start_codon	18739623	18739625	.	-	0	transcript_id "Ledus.S2G241600.t1"; gene_id "Ledus.S2G241600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5005.t1 is derived from g2443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21104496	21106783	.	+	.	Ledus.S1G242600
Ledus.S1	AUGUSTUS	transcript	21104496	21106783	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	start_codon	21104496	21104498	.	+	0	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	CDS	21104496	21105104	0.99	+	0	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	exon	21104496	21105104	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	intron	21105105	21105190	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	CDS	21105191	21105358	1	+	0	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	exon	21105191	21105358	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	intron	21105359	21105445	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	CDS	21105446	21105596	1	+	0	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	exon	21105446	21105596	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	intron	21105597	21105703	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	CDS	21105704	21105815	1	+	2	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	exon	21105704	21105815	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	intron	21105816	21105905	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	CDS	21105906	21106000	1	+	1	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	exon	21105906	21106000	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	intron	21106001	21106106	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	CDS	21106107	21106375	1	+	2	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	exon	21106107	21106375	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	intron	21106376	21106469	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	CDS	21106470	21106568	1	+	0	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	exon	21106470	21106568	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	intron	21106569	21106663	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	CDS	21106664	21106783	1	+	0	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	exon	21106664	21106783	.	+	.	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
Ledus.S1	AUGUSTUS	stop_codon	21106784	21106786	.	+	0	transcript_id "Ledus.S1G242600.t1"; gene_id "Ledus.S1G242600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg13170.t1 is derived from g9444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C41	AUGUSTUS	gene	305	5050	.	+	.	Ledus.C41G000100
Ledus.C41	AUGUSTUS	transcript	305	2351	.	+	.	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	start_codon	305	307	.	+	0	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	305	400	0.64	+	0	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	305	400	.	+	.	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	401	917	.	+	.	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	918	1097	1	+	0	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	918	1097	.	+	.	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	1098	1193	.	+	.	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	1194	1378	1	+	0	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	1194	1378	.	+	.	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	1379	1491	.	+	.	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	1492	1648	0.89	+	1	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	1492	1648	.	+	.	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	1649	1746	.	+	.	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	1747	1832	1	+	0	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	1747	1832	.	+	.	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	1833	2347	.	+	.	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	2348	2351	1	+	1	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	2348	2351	.	+	.	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	stop_codon	2352	2354	.	+	0	transcript_id "Ledus.C41G000100.t1"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	transcript	2402	5050	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	start_codon	2402	2404	.	+	0	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	2402	2467	0.85	+	0	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	2402	2467	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	2468	2606	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	2607	2708	1	+	0	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	2607	2708	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	2709	2806	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	2807	2914	1	+	0	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	2807	2914	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	2915	3048	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	3049	3113	1	+	0	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	3049	3113	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	3114	3255	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	3256	3373	1	+	1	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	3256	3373	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	3374	3517	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	3518	3691	1	+	0	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	3518	3691	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	3692	3837	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	3838	3905	1	+	0	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	3838	3905	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	3906	3997	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	3998	4908	0.57	+	1	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	3998	4908	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	intron	4909	5009	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	CDS	5010	5050	0.25	+	2	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	exon	5010	5050	.	+	.	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
Ledus.C41	AUGUSTUS	stop_codon	5051	5053	.	+	0	transcript_id "Ledus.C41G000100.t2"; gene_id "Ledus.C41G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg347.t1 is derived from g7208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1842872	1845123	.	+	.	Ledus.S2G022900
Ledus.S2	AUGUSTUS	transcript	1842872	1845123	.	+	.	transcript_id "Ledus.S2G022900.t1"; gene_id "Ledus.S2G022900"
Ledus.S2	AUGUSTUS	start_codon	1842872	1842874	.	+	0	transcript_id "Ledus.S2G022900.t1"; gene_id "Ledus.S2G022900"
Ledus.S2	AUGUSTUS	CDS	1842872	1843185	0.59	+	0	transcript_id "Ledus.S2G022900.t1"; gene_id "Ledus.S2G022900"
Ledus.S2	AUGUSTUS	exon	1842872	1843185	.	+	.	transcript_id "Ledus.S2G022900.t1"; gene_id "Ledus.S2G022900"
Ledus.S2	AUGUSTUS	intron	1843186	1843276	.	+	.	transcript_id "Ledus.S2G022900.t1"; gene_id "Ledus.S2G022900"
Ledus.S2	AUGUSTUS	CDS	1843277	1844365	1	+	1	transcript_id "Ledus.S2G022900.t1"; gene_id "Ledus.S2G022900"
Ledus.S2	AUGUSTUS	exon	1843277	1844365	.	+	.	transcript_id "Ledus.S2G022900.t1"; gene_id "Ledus.S2G022900"
Ledus.S2	AUGUSTUS	intron	1844366	1844573	.	+	.	transcript_id "Ledus.S2G022900.t1"; gene_id "Ledus.S2G022900"
Ledus.S2	AUGUSTUS	CDS	1844574	1845123	0.97	+	1	transcript_id "Ledus.S2G022900.t1"; gene_id "Ledus.S2G022900"
Ledus.S2	AUGUSTUS	exon	1844574	1845123	.	+	.	transcript_id "Ledus.S2G022900.t1"; gene_id "Ledus.S2G022900"
Ledus.S2	AUGUSTUS	stop_codon	1845124	1845126	.	+	0	transcript_id "Ledus.S2G022900.t1"; gene_id "Ledus.S2G022900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4480.t1 is derived from g1916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17266198	17269989	.	+	.	Ledus.S1G190100
Ledus.S1	AUGUSTUS	transcript	17266198	17269989	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	start_codon	17266198	17266200	.	+	0	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17266198	17266339	1	+	0	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17266198	17266339	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17266340	17266424	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17266425	17266769	1	+	2	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17266425	17266769	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17266770	17266980	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17266981	17267186	1	+	2	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17266981	17267186	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17267187	17267462	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17267463	17267568	1	+	0	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17267463	17267568	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17267569	17267743	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17267744	17268003	1	+	2	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17267744	17268003	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17268004	17268341	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17268342	17268477	1	+	0	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17268342	17268477	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17268478	17268686	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17268687	17268781	1	+	2	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17268687	17268781	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17268782	17268910	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17268911	17268964	1	+	0	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17268911	17268964	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17268965	17269056	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17269057	17269170	1	+	0	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17269057	17269170	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17269171	17269263	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17269264	17269362	1	+	0	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17269264	17269362	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17269363	17269452	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17269453	17269572	1	+	0	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17269453	17269572	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17269573	17269661	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17269662	17269748	1	+	0	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17269662	17269748	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17269749	17269824	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17269825	17269989	1	+	0	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17269825	17269989	.	+	.	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	stop_codon	17269990	17269992	.	+	0	transcript_id "Ledus.S1G190100.t1"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	transcript	17266198	17269989	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	start_codon	17266198	17266200	.	+	0	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17266198	17266339	0.98	+	0	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17266198	17266339	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17266340	17266424	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17266425	17266769	0.82	+	2	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17266425	17266769	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17266770	17266890	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17266891	17266924	0.83	+	2	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17266891	17266924	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17266925	17267080	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17267081	17267186	1	+	1	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17267081	17267186	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17267187	17267462	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17267463	17267568	1	+	0	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17267463	17267568	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17267569	17267743	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17267744	17268003	1	+	2	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17267744	17268003	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17268004	17268341	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17268342	17268477	1	+	0	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17268342	17268477	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17268478	17268686	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17268687	17268781	1	+	2	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17268687	17268781	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17268782	17268910	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17268911	17268964	1	+	0	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17268911	17268964	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17268965	17269056	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17269057	17269170	1	+	0	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17269057	17269170	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17269171	17269263	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17269264	17269362	1	+	0	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17269264	17269362	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17269363	17269452	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17269453	17269572	1	+	0	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17269453	17269572	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17269573	17269661	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17269662	17269748	1	+	0	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17269662	17269748	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	intron	17269749	17269824	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	CDS	17269825	17269989	0.97	+	0	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	exon	17269825	17269989	.	+	.	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
Ledus.S1	AUGUSTUS	stop_codon	17269990	17269992	.	+	0	transcript_id "Ledus.S1G190100.t2"; gene_id "Ledus.S1G190100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4633.t1 is derived from g2070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18492487	18493997	.	-	.	Ledus.S1G205400
Ledus.S1	AUGUSTUS	transcript	18492487	18493997	.	-	.	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	stop_codon	18492484	18492486	.	-	0	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	CDS	18492487	18492535	0.94	-	1	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	exon	18492487	18492535	.	-	.	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	intron	18492536	18492643	.	-	.	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	CDS	18492644	18493031	0.8	-	2	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	exon	18492644	18493031	.	-	.	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	intron	18493032	18493205	.	-	.	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	CDS	18493206	18493212	0.35	-	0	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	exon	18493206	18493212	.	-	.	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	intron	18493213	18493341	.	-	.	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	CDS	18493342	18493466	0.86	-	2	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	exon	18493342	18493466	.	-	.	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	intron	18493467	18493555	.	-	.	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	CDS	18493556	18493997	0.35	-	0	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	exon	18493556	18493997	.	-	.	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
Ledus.S1	AUGUSTUS	start_codon	18493995	18493997	.	-	0	transcript_id "Ledus.S1G205400.t1"; gene_id "Ledus.S1G205400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg518.t1 is derived from g7379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3018623	3019894	.	-	.	Ledus.S2G040000
Ledus.S2	AUGUSTUS	transcript	3018623	3019894	.	-	.	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	stop_codon	3018620	3018622	.	-	0	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	CDS	3018623	3018670	0.98	-	0	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	exon	3018623	3018670	.	-	.	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	intron	3018671	3018807	.	-	.	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	CDS	3018808	3018873	1	-	0	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	exon	3018808	3018873	.	-	.	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	intron	3018874	3019082	.	-	.	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	CDS	3019083	3019208	1	-	0	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	exon	3019083	3019208	.	-	.	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	intron	3019209	3019317	.	-	.	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	CDS	3019318	3019489	1	-	1	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	exon	3019318	3019489	.	-	.	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	intron	3019490	3019640	.	-	.	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	CDS	3019641	3019894	0.6	-	0	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	exon	3019641	3019894	.	-	.	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
Ledus.S2	AUGUSTUS	start_codon	3019892	3019894	.	-	0	transcript_id "Ledus.S2G040000.t1"; gene_id "Ledus.S2G040000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7371.t1 is derived from g12042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1629213	1630703	.	-	.	Ledus.S5G014900
Ledus.S5	AUGUSTUS	transcript	1629213	1630703	.	-	.	transcript_id "Ledus.S5G014900.t1"; gene_id "Ledus.S5G014900"
Ledus.S5	AUGUSTUS	stop_codon	1629210	1629212	.	-	0	transcript_id "Ledus.S5G014900.t1"; gene_id "Ledus.S5G014900"
Ledus.S5	AUGUSTUS	CDS	1629213	1630703	1	-	0	transcript_id "Ledus.S5G014900.t1"; gene_id "Ledus.S5G014900"
Ledus.S5	AUGUSTUS	exon	1629213	1630703	.	-	.	transcript_id "Ledus.S5G014900.t1"; gene_id "Ledus.S5G014900"
Ledus.S5	AUGUSTUS	start_codon	1630701	1630703	.	-	0	transcript_id "Ledus.S5G014900.t1"; gene_id "Ledus.S5G014900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5344.t1 is derived from g2783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23484275	23484646	.	-	.	Ledus.S1G276500
Ledus.S1	AUGUSTUS	transcript	23484275	23484646	.	-	.	transcript_id "Ledus.S1G276500.t1"; gene_id "Ledus.S1G276500"
Ledus.S1	AUGUSTUS	stop_codon	23484272	23484274	.	-	0	transcript_id "Ledus.S1G276500.t1"; gene_id "Ledus.S1G276500"
Ledus.S1	AUGUSTUS	CDS	23484275	23484646	1	-	0	transcript_id "Ledus.S1G276500.t1"; gene_id "Ledus.S1G276500"
Ledus.S1	AUGUSTUS	exon	23484275	23484646	.	-	.	transcript_id "Ledus.S1G276500.t1"; gene_id "Ledus.S1G276500"
Ledus.S1	AUGUSTUS	start_codon	23484644	23484646	.	-	0	transcript_id "Ledus.S1G276500.t1"; gene_id "Ledus.S1G276500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2760.t1 is derived from g194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3290699	3290932	.	+	.	Ledus.S1G018100
Ledus.S1	AUGUSTUS	transcript	3290699	3290932	.	+	.	transcript_id "Ledus.S1G018100.t1"; gene_id "Ledus.S1G018100"
Ledus.S1	AUGUSTUS	start_codon	3290699	3290701	.	+	0	transcript_id "Ledus.S1G018100.t1"; gene_id "Ledus.S1G018100"
Ledus.S1	AUGUSTUS	CDS	3290699	3290932	0.66	+	0	transcript_id "Ledus.S1G018100.t1"; gene_id "Ledus.S1G018100"
Ledus.S1	AUGUSTUS	exon	3290699	3290932	.	+	.	transcript_id "Ledus.S1G018100.t1"; gene_id "Ledus.S1G018100"
Ledus.S1	AUGUSTUS	stop_codon	3290933	3290935	.	+	0	transcript_id "Ledus.S1G018100.t1"; gene_id "Ledus.S1G018100"
# This transcript jg10725.t2 is derived from g11755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10726.t1 is derived from g11756.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17386107	17387528	.	-	.	Ledus.S3G220300
Ledus.S3	AUGUSTUS	transcript	17386107	17387528	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	stop_codon	17386104	17386106	.	-	0	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	CDS	17386107	17386130	1	-	0	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	exon	17386107	17386130	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	intron	17386131	17386224	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	CDS	17386225	17386278	1	-	0	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	exon	17386225	17386278	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	intron	17386279	17386370	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	CDS	17386371	17386460	1	-	0	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	exon	17386371	17386460	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	intron	17386461	17386540	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	CDS	17386541	17386588	1	-	0	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	exon	17386541	17386588	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	intron	17386589	17386672	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	CDS	17386673	17386724	1	-	1	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	exon	17386673	17386724	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	intron	17386725	17386824	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	CDS	17386825	17386926	1	-	1	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	exon	17386825	17386926	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	intron	17386927	17387015	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	CDS	17387016	17387073	1	-	2	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	exon	17387016	17387073	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	intron	17387074	17387161	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	CDS	17387162	17387244	1	-	1	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	exon	17387162	17387244	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	intron	17387245	17387418	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	CDS	17387419	17387528	0.55	-	0	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	exon	17387419	17387528	.	-	.	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
Ledus.S3	AUGUSTUS	start_codon	17387526	17387528	.	-	0	transcript_id "Ledus.S3G220300.t1"; gene_id "Ledus.S3G220300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4578.t1 is derived from g2015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17858434	17860040	.	-	.	Ledus.S1G199900
Ledus.S1	AUGUSTUS	transcript	17858434	17860040	.	-	.	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	stop_codon	17858431	17858433	.	-	0	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	CDS	17858434	17858653	1	-	1	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	exon	17858434	17858653	.	-	.	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	intron	17858654	17858752	.	-	.	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	CDS	17858753	17858970	1	-	0	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	exon	17858753	17858970	.	-	.	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	intron	17858971	17859056	.	-	.	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	CDS	17859057	17859425	1	-	0	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	exon	17859057	17859425	.	-	.	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	intron	17859426	17859504	.	-	.	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	CDS	17859505	17859695	1	-	2	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	exon	17859505	17859695	.	-	.	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	intron	17859696	17859778	.	-	.	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	CDS	17859779	17860040	0.67	-	0	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	exon	17859779	17860040	.	-	.	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
Ledus.S1	AUGUSTUS	start_codon	17860038	17860040	.	-	0	transcript_id "Ledus.S1G199900.t1"; gene_id "Ledus.S1G199900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6776.t1 is derived from g4220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34046800	34049485	.	-	.	Ledus.S1G419700
Ledus.S1	AUGUSTUS	transcript	34046800	34049485	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	stop_codon	34046797	34046799	.	-	0	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	CDS	34046800	34046876	0.99	-	2	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	exon	34046800	34046876	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	intron	34046877	34046966	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	CDS	34046967	34047107	1	-	2	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	exon	34046967	34047107	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	intron	34047108	34047205	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	CDS	34047206	34047299	1	-	0	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	exon	34047206	34047299	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	intron	34047300	34047370	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	CDS	34047371	34047604	1	-	0	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	exon	34047371	34047604	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	intron	34047605	34047681	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	CDS	34047682	34047735	1	-	0	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	exon	34047682	34047735	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	intron	34047736	34047855	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	CDS	34047856	34047942	0.93	-	0	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	exon	34047856	34047942	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	intron	34047943	34048021	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	CDS	34048022	34048101	0.99	-	2	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	exon	34048022	34048101	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	intron	34048102	34048213	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	CDS	34048214	34048250	0.99	-	0	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	exon	34048214	34048250	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	intron	34048251	34048367	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	CDS	34048368	34048423	0.99	-	2	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	exon	34048368	34048423	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	intron	34048424	34048801	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	CDS	34048802	34049002	0.96	-	2	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	exon	34048802	34049002	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	intron	34049003	34049086	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	CDS	34049087	34049246	0.99	-	0	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	exon	34049087	34049246	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	intron	34049247	34049338	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	CDS	34049339	34049485	0.54	-	0	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	exon	34049339	34049485	.	-	.	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
Ledus.S1	AUGUSTUS	start_codon	34049483	34049485	.	-	0	transcript_id "Ledus.S1G419700.t1"; gene_id "Ledus.S1G419700"
# This transcript jg4668.t2 is derived from g2106.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4668.t3 is derived from g2106.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4669.t1 is derived from g2107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18914209	18914517	.	-	.	Ledus.S1G209000
Ledus.S1	AUGUSTUS	transcript	18914209	18914517	.	-	.	transcript_id "Ledus.S1G209000.t1"; gene_id "Ledus.S1G209000"
Ledus.S1	AUGUSTUS	stop_codon	18914206	18914208	.	-	0	transcript_id "Ledus.S1G209000.t1"; gene_id "Ledus.S1G209000"
Ledus.S1	AUGUSTUS	CDS	18914209	18914517	0.99	-	0	transcript_id "Ledus.S1G209000.t1"; gene_id "Ledus.S1G209000"
Ledus.S1	AUGUSTUS	exon	18914209	18914517	.	-	.	transcript_id "Ledus.S1G209000.t1"; gene_id "Ledus.S1G209000"
Ledus.S1	AUGUSTUS	start_codon	18914515	18914517	.	-	0	transcript_id "Ledus.S1G209000.t1"; gene_id "Ledus.S1G209000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11762.t1 is derived from g5381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6629339	6632595	.	-	.	Ledus.S4G091800
Ledus.S4	AUGUSTUS	transcript	6629339	6632595	.	-	.	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	stop_codon	6629336	6629338	.	-	0	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	CDS	6629339	6629599	0.54	-	0	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	exon	6629339	6629599	.	-	.	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	intron	6629600	6629683	.	-	.	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	CDS	6629684	6632287	0.9	-	0	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	exon	6629684	6632287	.	-	.	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	intron	6632288	6632377	.	-	.	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	CDS	6632378	6632460	1	-	2	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	exon	6632378	6632460	.	-	.	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	intron	6632461	6632546	.	-	.	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	CDS	6632547	6632595	1	-	0	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	exon	6632547	6632595	.	-	.	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	start_codon	6632593	6632595	.	-	0	transcript_id "Ledus.S4G091800.t1"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	transcript	6629339	6632595	.	-	.	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	stop_codon	6629336	6629338	.	-	0	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	CDS	6629339	6629599	0.56	-	0	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	exon	6629339	6629599	.	-	.	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	intron	6629600	6629683	.	-	.	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	CDS	6629684	6632287	0.86	-	0	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	exon	6629684	6632287	.	-	.	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	intron	6632288	6632377	.	-	.	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	CDS	6632378	6632460	1	-	2	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	exon	6632378	6632460	.	-	.	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	intron	6632461	6632549	.	-	.	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	CDS	6632550	6632595	1	-	0	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	exon	6632550	6632595	.	-	.	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
Ledus.S4	AUGUSTUS	start_codon	6632593	6632595	.	-	0	transcript_id "Ledus.S4G091800.t2"; gene_id "Ledus.S4G091800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg418.t1 is derived from g7279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2340651	2343718	.	+	.	Ledus.S2G030000
Ledus.S2	AUGUSTUS	transcript	2340651	2343718	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	start_codon	2340651	2340653	.	+	0	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	CDS	2340651	2341354	0.74	+	0	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	exon	2340651	2341354	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	intron	2341355	2341446	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	CDS	2341447	2341466	0.84	+	1	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	exon	2341447	2341466	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	intron	2341467	2341668	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	CDS	2341669	2341853	0.65	+	2	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	exon	2341669	2341853	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	intron	2341854	2342256	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	CDS	2342257	2342507	0.84	+	0	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	exon	2342257	2342507	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	intron	2342508	2342606	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	CDS	2342607	2342660	0.93	+	1	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	exon	2342607	2342660	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	intron	2342661	2342772	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	CDS	2342773	2342815	1	+	1	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	exon	2342773	2342815	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	intron	2342816	2342912	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	CDS	2342913	2343005	0.69	+	0	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	exon	2342913	2343005	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	intron	2343006	2343123	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	CDS	2343124	2343186	0.61	+	0	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	exon	2343124	2343186	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	intron	2343187	2343297	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	CDS	2343298	2343393	0.94	+	0	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	exon	2343298	2343393	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	intron	2343394	2343469	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	CDS	2343470	2343547	1	+	0	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	exon	2343470	2343547	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	intron	2343548	2343634	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	CDS	2343635	2343718	1	+	0	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	exon	2343635	2343718	.	+	.	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
Ledus.S2	AUGUSTUS	stop_codon	2343719	2343721	.	+	0	transcript_id "Ledus.S2G030000.t1"; gene_id "Ledus.S2G030000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9865.t1 is derived from g10895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10675675	10684237	.	+	.	Ledus.S3G134200
Ledus.S3	AUGUSTUS	transcript	10675675	10684237	.	+	.	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	start_codon	10675675	10675677	.	+	0	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	CDS	10675675	10675717	0.75	+	0	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	exon	10675675	10675717	.	+	.	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	intron	10675718	10675892	.	+	.	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	CDS	10675893	10675916	0.8	+	2	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	exon	10675893	10675916	.	+	.	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	intron	10675917	10678170	.	+	.	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	CDS	10678171	10679163	0.01	+	2	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	exon	10678171	10679163	.	+	.	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	intron	10679164	10684226	.	+	.	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	CDS	10684227	10684237	0.03	+	2	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	exon	10684227	10684237	.	+	.	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
Ledus.S3	AUGUSTUS	stop_codon	10684238	10684240	.	+	0	transcript_id "Ledus.S3G134200.t1"; gene_id "Ledus.S3G134200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1612.t1 is derived from g8473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11388511	11389962	.	+	.	Ledus.S2G149400
Ledus.S2	AUGUSTUS	transcript	11388511	11389962	.	+	.	transcript_id "Ledus.S2G149400.t1"; gene_id "Ledus.S2G149400"
Ledus.S2	AUGUSTUS	start_codon	11388511	11388513	.	+	0	transcript_id "Ledus.S2G149400.t1"; gene_id "Ledus.S2G149400"
Ledus.S2	AUGUSTUS	CDS	11388511	11388569	0.03	+	0	transcript_id "Ledus.S2G149400.t1"; gene_id "Ledus.S2G149400"
Ledus.S2	AUGUSTUS	exon	11388511	11388569	.	+	.	transcript_id "Ledus.S2G149400.t1"; gene_id "Ledus.S2G149400"
Ledus.S2	AUGUSTUS	intron	11388570	11388651	.	+	.	transcript_id "Ledus.S2G149400.t1"; gene_id "Ledus.S2G149400"
Ledus.S2	AUGUSTUS	CDS	11388652	11389136	0.68	+	1	transcript_id "Ledus.S2G149400.t1"; gene_id "Ledus.S2G149400"
Ledus.S2	AUGUSTUS	exon	11388652	11389136	.	+	.	transcript_id "Ledus.S2G149400.t1"; gene_id "Ledus.S2G149400"
Ledus.S2	AUGUSTUS	intron	11389137	11389282	.	+	.	transcript_id "Ledus.S2G149400.t1"; gene_id "Ledus.S2G149400"
Ledus.S2	AUGUSTUS	CDS	11389283	11389962	0.93	+	2	transcript_id "Ledus.S2G149400.t1"; gene_id "Ledus.S2G149400"
Ledus.S2	AUGUSTUS	exon	11389283	11389962	.	+	.	transcript_id "Ledus.S2G149400.t1"; gene_id "Ledus.S2G149400"
Ledus.S2	AUGUSTUS	stop_codon	11389963	11389965	.	+	0	transcript_id "Ledus.S2G149400.t1"; gene_id "Ledus.S2G149400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3053.t1 is derived from g488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5550854	5558028	.	+	.	Ledus.S1G047400
Ledus.S1	AUGUSTUS	transcript	5550854	5558028	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	start_codon	5550854	5550856	.	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5550854	5550956	0.61	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5550854	5550956	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5550957	5551078	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5551079	5551149	0.5	+	2	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5551079	5551149	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5551150	5552171	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5552172	5552275	0.94	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5552172	5552275	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5552276	5552389	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5552390	5552476	0.94	+	1	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5552390	5552476	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5552477	5552631	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5552632	5552707	1	+	1	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5552632	5552707	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5552708	5552877	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5552878	5552952	1	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5552878	5552952	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5552953	5553102	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5553103	5553156	1	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5553103	5553156	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5553157	5553268	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5553269	5553328	0.99	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5553269	5553328	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5553329	5553701	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5553702	5553818	1	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5553702	5553818	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5553819	5553984	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5553985	5554079	1	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5553985	5554079	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5554080	5554283	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5554284	5554486	1	+	1	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5554284	5554486	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5554487	5554657	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5554658	5554758	1	+	2	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5554658	5554758	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5554759	5554888	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5554889	5554992	1	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5554889	5554992	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5554993	5555092	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5555093	5555258	1	+	1	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5555093	5555258	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5555259	5555429	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5555430	5555543	1	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5555430	5555543	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5555544	5555789	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5555790	5555872	1	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5555790	5555872	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5555873	5556100	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5556101	5556248	1	+	1	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5556101	5556248	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5556249	5556405	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5556406	5556432	1	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5556406	5556432	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5556433	5556613	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5556614	5556687	1	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5556614	5556687	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5556688	5556884	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5556885	5557761	0.64	+	1	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5556885	5557761	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	intron	5557762	5557911	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	CDS	5557912	5558028	0.76	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	exon	5557912	5558028	.	+	.	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
Ledus.S1	AUGUSTUS	stop_codon	5558029	5558031	.	+	0	transcript_id "Ledus.S1G047400.t1"; gene_id "Ledus.S1G047400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12542.t1 is derived from g6164.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12807957	12808349	.	-	.	Ledus.S4G169800
Ledus.S4	AUGUSTUS	transcript	12807957	12808349	.	-	.	transcript_id "Ledus.S4G169800.t1"; gene_id "Ledus.S4G169800"
Ledus.S4	AUGUSTUS	stop_codon	12807954	12807956	.	-	0	transcript_id "Ledus.S4G169800.t1"; gene_id "Ledus.S4G169800"
Ledus.S4	AUGUSTUS	CDS	12807957	12808120	0.46	-	2	transcript_id "Ledus.S4G169800.t1"; gene_id "Ledus.S4G169800"
Ledus.S4	AUGUSTUS	exon	12807957	12808120	.	-	.	transcript_id "Ledus.S4G169800.t1"; gene_id "Ledus.S4G169800"
Ledus.S4	AUGUSTUS	intron	12808121	12808207	.	-	.	transcript_id "Ledus.S4G169800.t1"; gene_id "Ledus.S4G169800"
Ledus.S4	AUGUSTUS	CDS	12808208	12808349	0.52	-	0	transcript_id "Ledus.S4G169800.t1"; gene_id "Ledus.S4G169800"
Ledus.S4	AUGUSTUS	exon	12808208	12808349	.	-	.	transcript_id "Ledus.S4G169800.t1"; gene_id "Ledus.S4G169800"
Ledus.S4	AUGUSTUS	start_codon	12808347	12808349	.	-	0	transcript_id "Ledus.S4G169800.t1"; gene_id "Ledus.S4G169800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4778.t1 is derived from g2216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19697736	19698587	.	+	.	Ledus.S1G219900
Ledus.S1	AUGUSTUS	transcript	19697736	19698587	.	+	.	transcript_id "Ledus.S1G219900.t1"; gene_id "Ledus.S1G219900"
Ledus.S1	AUGUSTUS	start_codon	19697736	19697738	.	+	0	transcript_id "Ledus.S1G219900.t1"; gene_id "Ledus.S1G219900"
Ledus.S1	AUGUSTUS	CDS	19697736	19698587	0.95	+	0	transcript_id "Ledus.S1G219900.t1"; gene_id "Ledus.S1G219900"
Ledus.S1	AUGUSTUS	exon	19697736	19698587	.	+	.	transcript_id "Ledus.S1G219900.t1"; gene_id "Ledus.S1G219900"
Ledus.S1	AUGUSTUS	stop_codon	19698588	19698590	.	+	0	transcript_id "Ledus.S1G219900.t1"; gene_id "Ledus.S1G219900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12370.t1 is derived from g5991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11467787	11469388	.	-	.	Ledus.S4G152600
Ledus.S4	AUGUSTUS	transcript	11467787	11469388	.	-	.	transcript_id "Ledus.S4G152600.t1"; gene_id "Ledus.S4G152600"
Ledus.S4	AUGUSTUS	stop_codon	11467784	11467786	.	-	0	transcript_id "Ledus.S4G152600.t1"; gene_id "Ledus.S4G152600"
Ledus.S4	AUGUSTUS	CDS	11467787	11469388	0.66	-	0	transcript_id "Ledus.S4G152600.t1"; gene_id "Ledus.S4G152600"
Ledus.S4	AUGUSTUS	exon	11467787	11469388	.	-	.	transcript_id "Ledus.S4G152600.t1"; gene_id "Ledus.S4G152600"
Ledus.S4	AUGUSTUS	start_codon	11469386	11469388	.	-	0	transcript_id "Ledus.S4G152600.t1"; gene_id "Ledus.S4G152600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5630.t1 is derived from g3069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25444849	25448037	.	+	.	Ledus.S1G305100
Ledus.S1	AUGUSTUS	transcript	25444849	25448037	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	start_codon	25444849	25444851	.	+	0	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	CDS	25444849	25446103	0.97	+	0	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	exon	25444849	25446103	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	intron	25446104	25446190	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	CDS	25446191	25446355	1	+	2	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	exon	25446191	25446355	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	intron	25446356	25446438	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	CDS	25446439	25446583	1	+	2	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	exon	25446439	25446583	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	intron	25446584	25446794	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	CDS	25446795	25446873	1	+	1	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	exon	25446795	25446873	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	intron	25446874	25446958	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	CDS	25446959	25447081	0.97	+	0	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	exon	25446959	25447081	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	intron	25447082	25447194	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	CDS	25447195	25447272	1	+	0	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	exon	25447195	25447272	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	intron	25447273	25447367	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	CDS	25447368	25447471	0.99	+	0	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	exon	25447368	25447471	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	intron	25447472	25447572	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	CDS	25447573	25447660	1	+	1	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	exon	25447573	25447660	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	intron	25447661	25447754	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	CDS	25447755	25447853	1	+	0	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	exon	25447755	25447853	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	intron	25447854	25447947	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	CDS	25447948	25448037	1	+	0	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	exon	25447948	25448037	.	+	.	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
Ledus.S1	AUGUSTUS	stop_codon	25448038	25448040	.	+	0	transcript_id "Ledus.S1G305100.t1"; gene_id "Ledus.S1G305100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7172.t1 is derived from g6703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1946186	1946903	.	+	.	Ledus.C7G023300
Ledus.C7	AUGUSTUS	transcript	1946186	1946903	.	+	.	transcript_id "Ledus.C7G023300.t1"; gene_id "Ledus.C7G023300"
Ledus.C7	AUGUSTUS	start_codon	1946186	1946188	.	+	0	transcript_id "Ledus.C7G023300.t1"; gene_id "Ledus.C7G023300"
Ledus.C7	AUGUSTUS	CDS	1946186	1946235	1	+	0	transcript_id "Ledus.C7G023300.t1"; gene_id "Ledus.C7G023300"
Ledus.C7	AUGUSTUS	exon	1946186	1946235	.	+	.	transcript_id "Ledus.C7G023300.t1"; gene_id "Ledus.C7G023300"
Ledus.C7	AUGUSTUS	intron	1946236	1946330	.	+	.	transcript_id "Ledus.C7G023300.t1"; gene_id "Ledus.C7G023300"
Ledus.C7	AUGUSTUS	CDS	1946331	1946463	1	+	1	transcript_id "Ledus.C7G023300.t1"; gene_id "Ledus.C7G023300"
Ledus.C7	AUGUSTUS	exon	1946331	1946463	.	+	.	transcript_id "Ledus.C7G023300.t1"; gene_id "Ledus.C7G023300"
Ledus.C7	AUGUSTUS	intron	1946464	1946843	.	+	.	transcript_id "Ledus.C7G023300.t1"; gene_id "Ledus.C7G023300"
Ledus.C7	AUGUSTUS	CDS	1946844	1946903	0.98	+	0	transcript_id "Ledus.C7G023300.t1"; gene_id "Ledus.C7G023300"
Ledus.C7	AUGUSTUS	exon	1946844	1946903	.	+	.	transcript_id "Ledus.C7G023300.t1"; gene_id "Ledus.C7G023300"
Ledus.C7	AUGUSTUS	stop_codon	1946904	1946906	.	+	0	transcript_id "Ledus.C7G023300.t1"; gene_id "Ledus.C7G023300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3438.t1 is derived from g873.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8373074	8379545	.	-	.	Ledus.S1G085900
Ledus.S1	AUGUSTUS	transcript	8373074	8379545	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	stop_codon	8373071	8373073	.	-	0	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8373074	8373116	1	-	1	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8373074	8373116	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8373117	8373209	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8373210	8373437	0.92	-	1	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8373210	8373437	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8373438	8373550	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8373551	8373802	1	-	1	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8373551	8373802	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8373803	8373889	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8373890	8374107	1	-	0	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8373890	8374107	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8374108	8374200	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8374201	8374371	1	-	0	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8374201	8374371	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8374372	8374577	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8374578	8374687	1	-	2	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8374578	8374687	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8374688	8374770	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8374771	8374940	1	-	1	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8374771	8374940	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8374941	8375136	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8375137	8375345	1	-	0	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8375137	8375345	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8375346	8375557	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8375558	8375647	1	-	0	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8375558	8375647	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8375648	8375763	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8375764	8375903	1	-	2	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8375764	8375903	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8375904	8376134	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8376135	8376242	1	-	2	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8376135	8376242	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8376243	8376554	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8376555	8376713	0.7	-	2	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8376555	8376713	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8376714	8376812	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8376813	8376906	0.85	-	0	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8376813	8376906	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8376907	8377137	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8377138	8377408	0.88	-	1	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8377138	8377408	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8377409	8377596	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8377597	8377863	1	-	1	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8377597	8377863	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8377864	8378019	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8378020	8378255	1	-	0	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8378020	8378255	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8378256	8378428	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8378429	8378662	1	-	0	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8378429	8378662	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8378663	8378769	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8378770	8379006	0.79	-	0	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8378770	8379006	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	intron	8379007	8379101	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	CDS	8379102	8379545	0.91	-	0	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	exon	8379102	8379545	.	-	.	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
Ledus.S1	AUGUSTUS	start_codon	8379543	8379545	.	-	0	transcript_id "Ledus.S1G085900.t1"; gene_id "Ledus.S1G085900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1729.t1 is derived from g8590.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12200812	12202239	.	+	.	Ledus.S2G161100
Ledus.S2	AUGUSTUS	transcript	12200812	12202239	.	+	.	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	start_codon	12200812	12200814	.	+	0	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	CDS	12200812	12200913	0.99	+	0	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	exon	12200812	12200913	.	+	.	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	intron	12200914	12201083	.	+	.	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	CDS	12201084	12201267	1	+	0	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	exon	12201084	12201267	.	+	.	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	intron	12201268	12201396	.	+	.	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	CDS	12201397	12201554	1	+	2	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	exon	12201397	12201554	.	+	.	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	intron	12201555	12201703	.	+	.	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	CDS	12201704	12201916	1	+	0	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	exon	12201704	12201916	.	+	.	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	intron	12201917	12202014	.	+	.	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	CDS	12202015	12202239	0.97	+	0	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	exon	12202015	12202239	.	+	.	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
Ledus.S2	AUGUSTUS	stop_codon	12202240	12202242	.	+	0	transcript_id "Ledus.S2G161100.t1"; gene_id "Ledus.S2G161100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9618.t1 is derived from g10648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8429279	8432388	.	-	.	Ledus.S3G109500
Ledus.S3	AUGUSTUS	transcript	8429279	8432388	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	stop_codon	8429276	8429278	.	-	0	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	CDS	8429279	8429581	0.98	-	0	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	exon	8429279	8429581	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	intron	8429582	8429700	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	CDS	8429701	8429828	0.79	-	2	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	exon	8429701	8429828	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	intron	8429829	8430032	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	CDS	8430033	8430159	0.67	-	0	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	exon	8430033	8430159	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	intron	8430160	8430305	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	CDS	8430306	8430438	0.98	-	1	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	exon	8430306	8430438	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	intron	8430439	8430587	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	CDS	8430588	8430739	0.57	-	0	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	exon	8430588	8430739	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	intron	8430740	8431044	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	CDS	8431045	8431065	0.63	-	0	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	exon	8431045	8431065	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	intron	8431066	8431212	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	CDS	8431213	8431288	0.99	-	1	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	exon	8431213	8431288	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	intron	8431289	8431382	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	CDS	8431383	8431488	0.57	-	2	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	exon	8431383	8431488	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	intron	8431489	8431567	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	CDS	8431568	8431669	0.64	-	2	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	exon	8431568	8431669	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	intron	8431670	8431757	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	CDS	8431758	8431874	0.97	-	2	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	exon	8431758	8431874	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	intron	8431875	8431956	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	CDS	8431957	8432089	0.98	-	0	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	exon	8431957	8432089	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	intron	8432090	8432181	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	CDS	8432182	8432388	0.97	-	0	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	exon	8432182	8432388	.	-	.	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
Ledus.S3	AUGUSTUS	start_codon	8432386	8432388	.	-	0	transcript_id "Ledus.S3G109500.t1"; gene_id "Ledus.S3G109500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11903.t1 is derived from g5522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7664127	7664720	.	+	.	Ledus.S4G105900
Ledus.S4	AUGUSTUS	transcript	7664127	7664720	.	+	.	transcript_id "Ledus.S4G105900.t1"; gene_id "Ledus.S4G105900"
Ledus.S4	AUGUSTUS	start_codon	7664127	7664129	.	+	0	transcript_id "Ledus.S4G105900.t1"; gene_id "Ledus.S4G105900"
Ledus.S4	AUGUSTUS	CDS	7664127	7664720	0.37	+	0	transcript_id "Ledus.S4G105900.t1"; gene_id "Ledus.S4G105900"
Ledus.S4	AUGUSTUS	exon	7664127	7664720	.	+	.	transcript_id "Ledus.S4G105900.t1"; gene_id "Ledus.S4G105900"
Ledus.S4	AUGUSTUS	stop_codon	7664721	7664723	.	+	0	transcript_id "Ledus.S4G105900.t1"; gene_id "Ledus.S4G105900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11881.t1 is derived from g5500.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7520386	7523873	.	+	.	Ledus.S4G103700
Ledus.S4	AUGUSTUS	transcript	7520386	7523873	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	start_codon	7520386	7520388	.	+	0	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7520386	7520477	0.87	+	0	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7520386	7520477	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	intron	7520478	7520637	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7520638	7520852	0.89	+	1	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7520638	7520852	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	intron	7520853	7520970	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7520971	7521182	1	+	2	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7520971	7521182	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	intron	7521183	7521344	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7521345	7521439	1	+	0	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7521345	7521439	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	intron	7521440	7521583	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7521584	7521698	1	+	1	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7521584	7521698	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	intron	7521699	7521882	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7521883	7522088	1	+	0	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7521883	7522088	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	intron	7522089	7522188	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7522189	7522338	1	+	1	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7522189	7522338	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	intron	7522339	7522428	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7522429	7522549	1	+	1	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7522429	7522549	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	intron	7522550	7522704	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7522705	7522934	1	+	0	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7522705	7522934	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	intron	7522935	7523126	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7523127	7523327	1	+	1	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7523127	7523327	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	intron	7523328	7523428	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7523429	7523645	0.56	+	1	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7523429	7523645	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	intron	7523646	7523725	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7523726	7523764	0.95	+	0	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7523726	7523764	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	intron	7523765	7523846	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	CDS	7523847	7523873	0.95	+	0	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	exon	7523847	7523873	.	+	.	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
Ledus.S4	AUGUSTUS	stop_codon	7523874	7523876	.	+	0	transcript_id "Ledus.S4G103700.t1"; gene_id "Ledus.S4G103700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8535.t1 is derived from g9565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	74417	78142	.	-	.	Ledus.S3G001200
Ledus.S3	AUGUSTUS	transcript	74417	78142	.	-	.	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	stop_codon	74414	74416	.	-	0	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	CDS	74417	74925	0.98	-	2	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	exon	74417	74925	.	-	.	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	intron	74926	75012	.	-	.	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	CDS	75013	76721	0.52	-	1	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	exon	75013	76721	.	-	.	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	intron	76722	76814	.	-	.	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	CDS	76815	76851	0.61	-	2	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	exon	76815	76851	.	-	.	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	intron	76852	78018	.	-	.	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	CDS	78019	78142	0.48	-	0	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	exon	78019	78142	.	-	.	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
Ledus.S3	AUGUSTUS	start_codon	78140	78142	.	-	0	transcript_id "Ledus.S3G001200.t1"; gene_id "Ledus.S3G001200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8715.t1 is derived from g9745.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1560001	1563018	.	-	.	Ledus.S3G019200
Ledus.S3	AUGUSTUS	transcript	1560001	1562586	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	stop_codon	1559998	1560000	.	-	0	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1560001	1560128	1	-	2	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1560001	1560128	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1560129	1560208	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1560209	1560431	0.52	-	0	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1560209	1560431	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1560432	1560546	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1560547	1560648	0.83	-	0	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1560547	1560648	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1560649	1560739	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1560740	1560900	1	-	2	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1560740	1560900	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1560901	1561111	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1561112	1561196	1	-	0	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1561112	1561196	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1561197	1561448	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1561449	1561515	1	-	1	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1561449	1561515	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1561516	1561696	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1561697	1561804	1	-	1	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1561697	1561804	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1561805	1561876	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1561877	1561942	0.85	-	1	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1561877	1561942	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1561943	1562057	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1562058	1562122	0.91	-	0	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1562058	1562122	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1562123	1562225	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1562226	1562444	1	-	0	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1562226	1562444	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1562445	1562529	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1562530	1562586	0.99	-	0	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1562530	1562586	.	-	.	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	start_codon	1562584	1562586	.	-	0	transcript_id "Ledus.S3G019200.t1"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	transcript	1560001	1563018	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	stop_codon	1559998	1560000	.	-	0	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1560001	1560128	1	-	2	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1560001	1560128	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1560129	1560208	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1560209	1560431	0.5	-	0	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1560209	1560431	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1560432	1560546	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1560547	1560648	0.82	-	0	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1560547	1560648	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1560649	1560739	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1560740	1560900	1	-	2	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1560740	1560900	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1560901	1561111	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1561112	1561196	1	-	0	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1561112	1561196	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1561197	1561448	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1561449	1561515	1	-	1	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1561449	1561515	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1561516	1561696	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1561697	1561804	1	-	1	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1561697	1561804	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1561805	1561876	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1561877	1561942	0.87	-	1	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1561877	1561942	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1561943	1562057	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1562058	1562122	0.9	-	0	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1562058	1562122	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1562123	1562225	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1562226	1562444	1	-	0	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1562226	1562444	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1562445	1562529	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1562530	1562635	0.88	-	1	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1562530	1562635	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	intron	1562636	1562926	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	CDS	1562927	1563018	0.64	-	0	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	exon	1562927	1563018	.	-	.	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
Ledus.S3	AUGUSTUS	start_codon	1563016	1563018	.	-	0	transcript_id "Ledus.S3G019200.t2"; gene_id "Ledus.S3G019200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9816.t1 is derived from g10846.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10092551	10096977	.	-	.	Ledus.S3G129300
Ledus.S3	AUGUSTUS	transcript	10092551	10096977	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	stop_codon	10092548	10092550	.	-	0	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10092551	10092614	0.96	-	1	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10092551	10092614	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10092615	10092745	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10092746	10092839	1	-	2	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10092746	10092839	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10092840	10092926	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10092927	10093138	0.95	-	1	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10092927	10093138	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10093139	10093273	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10093274	10093514	1	-	2	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10093274	10093514	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10093515	10093605	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10093606	10093718	1	-	1	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10093606	10093718	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10093719	10093858	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10093859	10094188	1	-	1	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10093859	10094188	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10094189	10094281	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10094282	10094451	1	-	0	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10094282	10094451	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10094452	10094593	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10094594	10095130	0.85	-	0	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10094594	10095130	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10095131	10095233	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10095234	10095461	0.98	-	0	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10095234	10095461	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10095462	10095627	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10095628	10095718	1	-	1	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10095628	10095718	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10095719	10095809	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10095810	10095948	1	-	2	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10095810	10095948	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10095949	10096167	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10096168	10096206	0.99	-	2	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10096168	10096206	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10096207	10096297	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10096298	10096400	0.92	-	0	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10096298	10096400	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10096401	10096603	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10096604	10096735	0.8	-	0	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10096604	10096735	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	intron	10096736	10096917	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	CDS	10096918	10096977	0.53	-	0	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	exon	10096918	10096977	.	-	.	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
Ledus.S3	AUGUSTUS	start_codon	10096975	10096977	.	-	0	transcript_id "Ledus.S3G129300.t1"; gene_id "Ledus.S3G129300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5147.t1 is derived from g2586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21972266	21972529	.	+	.	Ledus.S1G256800
Ledus.S1	AUGUSTUS	transcript	21972266	21972529	.	+	.	transcript_id "Ledus.S1G256800.t1"; gene_id "Ledus.S1G256800"
Ledus.S1	AUGUSTUS	start_codon	21972266	21972268	.	+	0	transcript_id "Ledus.S1G256800.t1"; gene_id "Ledus.S1G256800"
Ledus.S1	AUGUSTUS	CDS	21972266	21972529	0.86	+	0	transcript_id "Ledus.S1G256800.t1"; gene_id "Ledus.S1G256800"
Ledus.S1	AUGUSTUS	exon	21972266	21972529	.	+	.	transcript_id "Ledus.S1G256800.t1"; gene_id "Ledus.S1G256800"
Ledus.S1	AUGUSTUS	stop_codon	21972530	21972532	.	+	0	transcript_id "Ledus.S1G256800.t1"; gene_id "Ledus.S1G256800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7613.t1 is derived from g12284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4361157	4361480	.	-	.	Ledus.S5G039100
Ledus.S5	AUGUSTUS	transcript	4361157	4361480	.	-	.	transcript_id "Ledus.S5G039100.t1"; gene_id "Ledus.S5G039100"
Ledus.S5	AUGUSTUS	stop_codon	4361154	4361156	.	-	0	transcript_id "Ledus.S5G039100.t1"; gene_id "Ledus.S5G039100"
Ledus.S5	AUGUSTUS	CDS	4361157	4361480	0.98	-	0	transcript_id "Ledus.S5G039100.t1"; gene_id "Ledus.S5G039100"
Ledus.S5	AUGUSTUS	exon	4361157	4361480	.	-	.	transcript_id "Ledus.S5G039100.t1"; gene_id "Ledus.S5G039100"
Ledus.S5	AUGUSTUS	start_codon	4361478	4361480	.	-	0	transcript_id "Ledus.S5G039100.t1"; gene_id "Ledus.S5G039100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7180.t1 is derived from g6711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2017765	2019288	.	-	.	Ledus.C7G024100
Ledus.C7	AUGUSTUS	transcript	2017765	2019288	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	stop_codon	2017762	2017764	.	-	0	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	CDS	2017765	2017882	1	-	1	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	exon	2017765	2017882	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	intron	2017883	2017981	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	CDS	2017982	2018094	0.62	-	0	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	exon	2017982	2018094	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	intron	2018095	2018320	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	CDS	2018321	2018395	1	-	0	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	exon	2018321	2018395	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	intron	2018396	2018477	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	CDS	2018478	2018591	1	-	0	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	exon	2018478	2018591	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	intron	2018592	2018701	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	CDS	2018702	2018782	1	-	0	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	exon	2018702	2018782	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	intron	2018783	2018873	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	CDS	2018874	2018995	1	-	2	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	exon	2018874	2018995	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	intron	2018996	2019185	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	CDS	2019186	2019288	0.47	-	0	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	exon	2019186	2019288	.	-	.	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
Ledus.C7	AUGUSTUS	start_codon	2019286	2019288	.	-	0	transcript_id "Ledus.C7G024100.t1"; gene_id "Ledus.C7G024100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1625.t1 is derived from g8486.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11472430	11474222	.	+	.	Ledus.S2G150700
Ledus.S2	AUGUSTUS	transcript	11472430	11474222	.	+	.	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	start_codon	11472430	11472432	.	+	0	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	CDS	11472430	11473287	0.68	+	0	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	exon	11472430	11473287	.	+	.	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	intron	11473288	11473414	.	+	.	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	CDS	11473415	11473491	1	+	0	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	exon	11473415	11473491	.	+	.	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	intron	11473492	11473686	.	+	.	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	CDS	11473687	11473962	1	+	1	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	exon	11473687	11473962	.	+	.	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	intron	11473963	11474107	.	+	.	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	CDS	11474108	11474222	1	+	1	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	exon	11474108	11474222	.	+	.	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	stop_codon	11474223	11474225	.	+	0	transcript_id "Ledus.S2G150700.t1"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	transcript	11472430	11474222	.	+	.	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	start_codon	11472430	11472432	.	+	0	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	CDS	11472430	11473287	0.67	+	0	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	exon	11472430	11473287	.	+	.	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	intron	11473288	11473414	.	+	.	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	CDS	11473415	11473491	1	+	0	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	exon	11473415	11473491	.	+	.	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	intron	11473492	11473689	.	+	.	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	CDS	11473690	11473962	1	+	1	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	exon	11473690	11473962	.	+	.	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	intron	11473963	11474107	.	+	.	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	CDS	11474108	11474222	1	+	1	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	exon	11474108	11474222	.	+	.	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
Ledus.S2	AUGUSTUS	stop_codon	11474223	11474225	.	+	0	transcript_id "Ledus.S2G150700.t2"; gene_id "Ledus.S2G150700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7124.t1 is derived from g6655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1686610	1687102	.	-	.	Ledus.C7G018500
Ledus.C7	AUGUSTUS	transcript	1686610	1687102	.	-	.	transcript_id "Ledus.C7G018500.t1"; gene_id "Ledus.C7G018500"
Ledus.C7	AUGUSTUS	stop_codon	1686607	1686609	.	-	0	transcript_id "Ledus.C7G018500.t1"; gene_id "Ledus.C7G018500"
Ledus.C7	AUGUSTUS	CDS	1686610	1686659	0.98	-	2	transcript_id "Ledus.C7G018500.t1"; gene_id "Ledus.C7G018500"
Ledus.C7	AUGUSTUS	exon	1686610	1686659	.	-	.	transcript_id "Ledus.C7G018500.t1"; gene_id "Ledus.C7G018500"
Ledus.C7	AUGUSTUS	intron	1686660	1686746	.	-	.	transcript_id "Ledus.C7G018500.t1"; gene_id "Ledus.C7G018500"
Ledus.C7	AUGUSTUS	CDS	1686747	1686831	1	-	0	transcript_id "Ledus.C7G018500.t1"; gene_id "Ledus.C7G018500"
Ledus.C7	AUGUSTUS	exon	1686747	1686831	.	-	.	transcript_id "Ledus.C7G018500.t1"; gene_id "Ledus.C7G018500"
Ledus.C7	AUGUSTUS	intron	1686832	1686976	.	-	.	transcript_id "Ledus.C7G018500.t1"; gene_id "Ledus.C7G018500"
Ledus.C7	AUGUSTUS	CDS	1686977	1687102	0.63	-	0	transcript_id "Ledus.C7G018500.t1"; gene_id "Ledus.C7G018500"
Ledus.C7	AUGUSTUS	exon	1686977	1687102	.	-	.	transcript_id "Ledus.C7G018500.t1"; gene_id "Ledus.C7G018500"
Ledus.C7	AUGUSTUS	start_codon	1687100	1687102	.	-	0	transcript_id "Ledus.C7G018500.t1"; gene_id "Ledus.C7G018500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2857.t1 is derived from g291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4217319	4218771	.	-	.	Ledus.S1G027800
Ledus.S1	AUGUSTUS	transcript	4217319	4218771	.	-	.	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	stop_codon	4217316	4217318	.	-	0	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	CDS	4217319	4217417	0.81	-	0	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	exon	4217319	4217417	.	-	.	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	intron	4217418	4217555	.	-	.	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	CDS	4217556	4217674	0.94	-	2	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	exon	4217556	4217674	.	-	.	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	intron	4217675	4217803	.	-	.	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	CDS	4217804	4217949	0.94	-	1	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	exon	4217804	4217949	.	-	.	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	intron	4217950	4218556	.	-	.	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	CDS	4218557	4218771	0.83	-	0	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	exon	4218557	4218771	.	-	.	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
Ledus.S1	AUGUSTUS	start_codon	4218769	4218771	.	-	0	transcript_id "Ledus.S1G027800.t1"; gene_id "Ledus.S1G027800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9608.t1 is derived from g10638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8380912	8384552	.	+	.	Ledus.S3G108500
Ledus.S3	AUGUSTUS	transcript	8380912	8384552	.	+	.	transcript_id "Ledus.S3G108500.t1"; gene_id "Ledus.S3G108500"
Ledus.S3	AUGUSTUS	start_codon	8380912	8380914	.	+	0	transcript_id "Ledus.S3G108500.t1"; gene_id "Ledus.S3G108500"
Ledus.S3	AUGUSTUS	CDS	8380912	8383179	0.06	+	0	transcript_id "Ledus.S3G108500.t1"; gene_id "Ledus.S3G108500"
Ledus.S3	AUGUSTUS	exon	8380912	8383179	.	+	.	transcript_id "Ledus.S3G108500.t1"; gene_id "Ledus.S3G108500"
Ledus.S3	AUGUSTUS	intron	8383180	8383339	.	+	.	transcript_id "Ledus.S3G108500.t1"; gene_id "Ledus.S3G108500"
Ledus.S3	AUGUSTUS	CDS	8383340	8384161	0.55	+	0	transcript_id "Ledus.S3G108500.t1"; gene_id "Ledus.S3G108500"
Ledus.S3	AUGUSTUS	exon	8383340	8384161	.	+	.	transcript_id "Ledus.S3G108500.t1"; gene_id "Ledus.S3G108500"
Ledus.S3	AUGUSTUS	intron	8384162	8384351	.	+	.	transcript_id "Ledus.S3G108500.t1"; gene_id "Ledus.S3G108500"
Ledus.S3	AUGUSTUS	CDS	8384352	8384552	0.24	+	0	transcript_id "Ledus.S3G108500.t1"; gene_id "Ledus.S3G108500"
Ledus.S3	AUGUSTUS	exon	8384352	8384552	.	+	.	transcript_id "Ledus.S3G108500.t1"; gene_id "Ledus.S3G108500"
Ledus.S3	AUGUSTUS	stop_codon	8384553	8384555	.	+	0	transcript_id "Ledus.S3G108500.t1"; gene_id "Ledus.S3G108500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12719.t1 is derived from g6341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14060343	14061392	.	-	.	Ledus.S4G187500
Ledus.S4	AUGUSTUS	transcript	14060343	14061392	.	-	.	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	stop_codon	14060340	14060342	.	-	0	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	CDS	14060343	14060540	1	-	0	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	exon	14060343	14060540	.	-	.	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	intron	14060541	14060628	.	-	.	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	CDS	14060629	14060796	1	-	0	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	exon	14060629	14060796	.	-	.	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	intron	14060797	14060871	.	-	.	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	CDS	14060872	14061077	1	-	2	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	exon	14060872	14061077	.	-	.	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	intron	14061078	14061157	.	-	.	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	CDS	14061158	14061392	0.91	-	0	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	exon	14061158	14061392	.	-	.	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
Ledus.S4	AUGUSTUS	start_codon	14061390	14061392	.	-	0	transcript_id "Ledus.S4G187500.t1"; gene_id "Ledus.S4G187500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7837.t1 is derived from g12508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7394548	7396159	.	+	.	Ledus.S5G061500
Ledus.S5	AUGUSTUS	transcript	7394548	7396159	.	+	.	transcript_id "Ledus.S5G061500.t1"; gene_id "Ledus.S5G061500"
Ledus.S5	AUGUSTUS	start_codon	7394548	7394550	.	+	0	transcript_id "Ledus.S5G061500.t1"; gene_id "Ledus.S5G061500"
Ledus.S5	AUGUSTUS	CDS	7394548	7394680	0.97	+	0	transcript_id "Ledus.S5G061500.t1"; gene_id "Ledus.S5G061500"
Ledus.S5	AUGUSTUS	exon	7394548	7394680	.	+	.	transcript_id "Ledus.S5G061500.t1"; gene_id "Ledus.S5G061500"
Ledus.S5	AUGUSTUS	intron	7394681	7395192	.	+	.	transcript_id "Ledus.S5G061500.t1"; gene_id "Ledus.S5G061500"
Ledus.S5	AUGUSTUS	CDS	7395193	7395863	1	+	2	transcript_id "Ledus.S5G061500.t1"; gene_id "Ledus.S5G061500"
Ledus.S5	AUGUSTUS	exon	7395193	7395863	.	+	.	transcript_id "Ledus.S5G061500.t1"; gene_id "Ledus.S5G061500"
Ledus.S5	AUGUSTUS	intron	7395864	7395955	.	+	.	transcript_id "Ledus.S5G061500.t1"; gene_id "Ledus.S5G061500"
Ledus.S5	AUGUSTUS	CDS	7395956	7396159	0.98	+	0	transcript_id "Ledus.S5G061500.t1"; gene_id "Ledus.S5G061500"
Ledus.S5	AUGUSTUS	exon	7395956	7396159	.	+	.	transcript_id "Ledus.S5G061500.t1"; gene_id "Ledus.S5G061500"
Ledus.S5	AUGUSTUS	stop_codon	7396160	7396162	.	+	0	transcript_id "Ledus.S5G061500.t1"; gene_id "Ledus.S5G061500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11848.t1 is derived from g5467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7290086	7296451	.	+	.	Ledus.S4G100400
Ledus.S4	AUGUSTUS	transcript	7290086	7296451	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	start_codon	7290086	7290088	.	+	0	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7290086	7290164	0.84	+	0	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7290086	7290164	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	intron	7290165	7290269	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7290270	7290334	1	+	2	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7290270	7290334	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	intron	7290335	7290429	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7290430	7290522	1	+	0	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7290430	7290522	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	intron	7290523	7290611	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7290612	7290684	1	+	0	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7290612	7290684	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	intron	7290685	7290801	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7290802	7291095	1	+	2	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7290802	7291095	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	intron	7291096	7291200	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7291201	7291268	1	+	2	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7291201	7291268	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	intron	7291269	7291355	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7291356	7291487	0.99	+	0	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7291356	7291487	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	intron	7291488	7291617	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7291618	7291659	1	+	0	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7291618	7291659	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	intron	7291660	7291756	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7291757	7292221	1	+	0	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7291757	7292221	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	intron	7292222	7292304	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7292305	7292778	1	+	0	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7292305	7292778	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	intron	7292779	7292859	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7292860	7293975	1	+	0	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7292860	7293975	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	intron	7293976	7294089	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7294090	7294425	1	+	0	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7294090	7294425	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	intron	7294426	7294495	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	CDS	7294496	7296451	0.96	+	0	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	exon	7294496	7296451	.	+	.	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
Ledus.S4	AUGUSTUS	stop_codon	7296452	7296454	.	+	0	transcript_id "Ledus.S4G100400.t1"; gene_id "Ledus.S4G100400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1344.t1 is derived from g8205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9350597	9352018	.	-	.	Ledus.S2G122600
Ledus.S2	AUGUSTUS	transcript	9350597	9352018	.	-	.	transcript_id "Ledus.S2G122600.t1"; gene_id "Ledus.S2G122600"
Ledus.S2	AUGUSTUS	stop_codon	9350594	9350596	.	-	0	transcript_id "Ledus.S2G122600.t1"; gene_id "Ledus.S2G122600"
Ledus.S2	AUGUSTUS	CDS	9350597	9352018	0.97	-	0	transcript_id "Ledus.S2G122600.t1"; gene_id "Ledus.S2G122600"
Ledus.S2	AUGUSTUS	exon	9350597	9352018	.	-	.	transcript_id "Ledus.S2G122600.t1"; gene_id "Ledus.S2G122600"
Ledus.S2	AUGUSTUS	start_codon	9352016	9352018	.	-	0	transcript_id "Ledus.S2G122600.t1"; gene_id "Ledus.S2G122600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9388.t1 is derived from g10418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6476073	6476697	.	-	.	Ledus.S3G086500
Ledus.S3	AUGUSTUS	transcript	6476073	6476697	.	-	.	transcript_id "Ledus.S3G086500.t1"; gene_id "Ledus.S3G086500"
Ledus.S3	AUGUSTUS	stop_codon	6476070	6476072	.	-	0	transcript_id "Ledus.S3G086500.t1"; gene_id "Ledus.S3G086500"
Ledus.S3	AUGUSTUS	CDS	6476073	6476365	0.64	-	2	transcript_id "Ledus.S3G086500.t1"; gene_id "Ledus.S3G086500"
Ledus.S3	AUGUSTUS	exon	6476073	6476365	.	-	.	transcript_id "Ledus.S3G086500.t1"; gene_id "Ledus.S3G086500"
Ledus.S3	AUGUSTUS	intron	6476366	6476486	.	-	.	transcript_id "Ledus.S3G086500.t1"; gene_id "Ledus.S3G086500"
Ledus.S3	AUGUSTUS	CDS	6476487	6476697	0.57	-	0	transcript_id "Ledus.S3G086500.t1"; gene_id "Ledus.S3G086500"
Ledus.S3	AUGUSTUS	exon	6476487	6476697	.	-	.	transcript_id "Ledus.S3G086500.t1"; gene_id "Ledus.S3G086500"
Ledus.S3	AUGUSTUS	start_codon	6476695	6476697	.	-	0	transcript_id "Ledus.S3G086500.t1"; gene_id "Ledus.S3G086500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1095.t1 is derived from g7956.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7496694	7498237	.	-	.	Ledus.S2G097700
Ledus.S2	AUGUSTUS	transcript	7496694	7498237	.	-	.	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	stop_codon	7496691	7496693	.	-	0	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	CDS	7496694	7496954	0.96	-	0	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	exon	7496694	7496954	.	-	.	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	intron	7496955	7497035	.	-	.	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	CDS	7497036	7497165	0.96	-	1	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	exon	7497036	7497165	.	-	.	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	intron	7497166	7497252	.	-	.	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	CDS	7497253	7497356	0.99	-	0	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	exon	7497253	7497356	.	-	.	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	intron	7497357	7497431	.	-	.	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	CDS	7497432	7498077	0.6	-	1	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	exon	7497432	7498077	.	-	.	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	intron	7498078	7498148	.	-	.	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	CDS	7498149	7498237	0.58	-	0	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	exon	7498149	7498237	.	-	.	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
Ledus.S2	AUGUSTUS	start_codon	7498235	7498237	.	-	0	transcript_id "Ledus.S2G097700.t1"; gene_id "Ledus.S2G097700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10327.t1 is derived from g11357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14237082	14237973	.	+	.	Ledus.S3G180400
Ledus.S3	AUGUSTUS	transcript	14237082	14237973	.	+	.	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	start_codon	14237082	14237084	.	+	0	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	CDS	14237082	14237121	0.57	+	0	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	exon	14237082	14237121	.	+	.	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	intron	14237122	14237310	.	+	.	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	CDS	14237311	14237381	1	+	2	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	exon	14237311	14237381	.	+	.	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	intron	14237382	14237536	.	+	.	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	CDS	14237537	14237617	1	+	0	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	exon	14237537	14237617	.	+	.	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	intron	14237618	14237699	.	+	.	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	CDS	14237700	14237743	1	+	0	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	exon	14237700	14237743	.	+	.	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	intron	14237744	14237876	.	+	.	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	CDS	14237877	14237973	1	+	1	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	exon	14237877	14237973	.	+	.	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
Ledus.S3	AUGUSTUS	stop_codon	14237974	14237976	.	+	0	transcript_id "Ledus.S3G180400.t1"; gene_id "Ledus.S3G180400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8257.t1 is derived from g12928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10239533	10239841	.	-	.	Ledus.S5G103500
Ledus.S5	AUGUSTUS	transcript	10239533	10239841	.	-	.	transcript_id "Ledus.S5G103500.t1"; gene_id "Ledus.S5G103500"
Ledus.S5	AUGUSTUS	stop_codon	10239530	10239532	.	-	0	transcript_id "Ledus.S5G103500.t1"; gene_id "Ledus.S5G103500"
Ledus.S5	AUGUSTUS	CDS	10239533	10239841	1	-	0	transcript_id "Ledus.S5G103500.t1"; gene_id "Ledus.S5G103500"
Ledus.S5	AUGUSTUS	exon	10239533	10239841	.	-	.	transcript_id "Ledus.S5G103500.t1"; gene_id "Ledus.S5G103500"
Ledus.S5	AUGUSTUS	start_codon	10239839	10239841	.	-	0	transcript_id "Ledus.S5G103500.t1"; gene_id "Ledus.S5G103500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9778.t1 is derived from g10808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9756076	9757056	.	-	.	Ledus.S3G125500
Ledus.S3	AUGUSTUS	transcript	9756076	9757056	.	-	.	transcript_id "Ledus.S3G125500.t1"; gene_id "Ledus.S3G125500"
Ledus.S3	AUGUSTUS	stop_codon	9756073	9756075	.	-	0	transcript_id "Ledus.S3G125500.t1"; gene_id "Ledus.S3G125500"
Ledus.S3	AUGUSTUS	CDS	9756076	9757056	0.71	-	0	transcript_id "Ledus.S3G125500.t1"; gene_id "Ledus.S3G125500"
Ledus.S3	AUGUSTUS	exon	9756076	9757056	.	-	.	transcript_id "Ledus.S3G125500.t1"; gene_id "Ledus.S3G125500"
Ledus.S3	AUGUSTUS	start_codon	9757054	9757056	.	-	0	transcript_id "Ledus.S3G125500.t1"; gene_id "Ledus.S3G125500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9938.t1 is derived from g10968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11312531	11313241	.	+	.	Ledus.S3G141500
Ledus.S3	AUGUSTUS	transcript	11312531	11313241	.	+	.	transcript_id "Ledus.S3G141500.t1"; gene_id "Ledus.S3G141500"
Ledus.S3	AUGUSTUS	start_codon	11312531	11312533	.	+	0	transcript_id "Ledus.S3G141500.t1"; gene_id "Ledus.S3G141500"
Ledus.S3	AUGUSTUS	CDS	11312531	11312694	0.98	+	0	transcript_id "Ledus.S3G141500.t1"; gene_id "Ledus.S3G141500"
Ledus.S3	AUGUSTUS	exon	11312531	11312694	.	+	.	transcript_id "Ledus.S3G141500.t1"; gene_id "Ledus.S3G141500"
Ledus.S3	AUGUSTUS	intron	11312695	11312892	.	+	.	transcript_id "Ledus.S3G141500.t1"; gene_id "Ledus.S3G141500"
Ledus.S3	AUGUSTUS	CDS	11312893	11313241	0.86	+	1	transcript_id "Ledus.S3G141500.t1"; gene_id "Ledus.S3G141500"
Ledus.S3	AUGUSTUS	exon	11312893	11313241	.	+	.	transcript_id "Ledus.S3G141500.t1"; gene_id "Ledus.S3G141500"
Ledus.S3	AUGUSTUS	stop_codon	11313242	11313244	.	+	0	transcript_id "Ledus.S3G141500.t1"; gene_id "Ledus.S3G141500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8831.t1 is derived from g9861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2198457	2199601	.	-	.	Ledus.S3G030800
Ledus.S3	AUGUSTUS	transcript	2198457	2199601	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	stop_codon	2198454	2198456	.	-	0	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	CDS	2198457	2198552	0.87	-	0	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	exon	2198457	2198552	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	intron	2198553	2198650	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	CDS	2198651	2198812	1	-	0	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	exon	2198651	2198812	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	intron	2198813	2198905	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	CDS	2198906	2199001	1	-	0	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	exon	2198906	2199001	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	intron	2199002	2199093	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	CDS	2199094	2199126	1	-	0	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	exon	2199094	2199126	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	intron	2199127	2199241	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	CDS	2199242	2199299	0.99	-	1	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	exon	2199242	2199299	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	intron	2199300	2199372	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	CDS	2199373	2199422	1	-	0	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	exon	2199373	2199422	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	intron	2199423	2199514	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	CDS	2199515	2199601	0.98	-	0	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	exon	2199515	2199601	.	-	.	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
Ledus.S3	AUGUSTUS	start_codon	2199599	2199601	.	-	0	transcript_id "Ledus.S3G030800.t1"; gene_id "Ledus.S3G030800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9416.t1 is derived from g10446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6609886	6613933	.	+	.	Ledus.S3G089300
Ledus.S3	AUGUSTUS	transcript	6609886	6613933	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	start_codon	6609886	6609888	.	+	0	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6609886	6609961	0.58	+	0	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6609886	6609961	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6609962	6610102	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6610103	6610422	1	+	2	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6610103	6610422	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6610423	6610678	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6610679	6610797	1	+	0	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6610679	6610797	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6610798	6610947	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6610948	6611045	1	+	1	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6610948	6611045	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6611046	6611132	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6611133	6611192	1	+	2	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6611133	6611192	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6611193	6611281	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6611282	6611328	1	+	2	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6611282	6611328	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6611329	6611416	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6611417	6611611	1	+	0	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6611417	6611611	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6611612	6611786	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6611787	6611833	1	+	0	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6611787	6611833	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6611834	6612019	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6612020	6612086	1	+	1	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6612020	6612086	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6612087	6612255	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6612256	6612356	1	+	0	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6612256	6612356	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6612357	6612562	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6612563	6612664	1	+	1	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6612563	6612664	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6612665	6612885	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6612886	6613024	1	+	1	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6612886	6613024	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6613025	6613240	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6613241	6613303	1	+	0	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6613241	6613303	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6613304	6613386	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6613387	6613470	1	+	0	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6613387	6613470	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	intron	6613471	6613585	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	CDS	6613586	6613933	0.9	+	0	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	exon	6613586	6613933	.	+	.	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
Ledus.S3	AUGUSTUS	stop_codon	6613934	6613936	.	+	0	transcript_id "Ledus.S3G089300.t1"; gene_id "Ledus.S3G089300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg6893.t1 is derived from g4337.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35018536	35023622	.	+	.	Ledus.S1G431400
Ledus.S1	AUGUSTUS	transcript	35018536	35019613	.	+	.	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	start_codon	35018536	35018538	.	+	0	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35018536	35019012	0.92	+	0	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35018536	35019012	.	+	.	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35019013	35019119	.	+	.	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35019120	35019173	1	+	0	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35019120	35019173	.	+	.	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35019174	35019248	.	+	.	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35019249	35019411	1	+	0	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35019249	35019411	.	+	.	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35019412	35019602	.	+	.	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35019603	35019613	1	+	2	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35019603	35019613	.	+	.	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	stop_codon	35019614	35019616	.	+	0	transcript_id "Ledus.S1G431400.t1"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	transcript	35018536	35023622	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	start_codon	35018536	35018538	.	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35018536	35019012	0.9	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35018536	35019012	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35019013	35019119	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35019120	35019173	1	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35019120	35019173	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35019174	35019248	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35019249	35019411	0.99	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35019249	35019411	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35019412	35020153	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35020154	35020234	1	+	2	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35020154	35020234	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35020235	35020309	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35020310	35020590	1	+	2	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35020310	35020590	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35020591	35020680	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35020681	35020863	0.71	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35020681	35020863	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35020864	35021039	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35021040	35021138	0.78	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35021040	35021138	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35021139	35021259	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35021260	35021409	1	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35021260	35021409	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35021410	35021512	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35021513	35021659	0.91	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35021513	35021659	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35021660	35021742	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35021743	35021793	1	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35021743	35021793	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35021794	35021875	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35021876	35022066	1	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35021876	35022066	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35022067	35022149	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35022150	35022285	1	+	1	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35022150	35022285	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35022286	35022373	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35022374	35022471	1	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35022374	35022471	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35022472	35022542	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35022543	35022777	1	+	1	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35022543	35022777	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35022778	35022867	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35022868	35023071	1	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35022868	35023071	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35023072	35023162	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35023163	35023243	1	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35023163	35023243	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35023244	35023322	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35023323	35023622	1	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35023323	35023622	.	+	.	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	stop_codon	35023623	35023625	.	+	0	transcript_id "Ledus.S1G431400.t2"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	transcript	35019852	35023622	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	start_codon	35019852	35019854	.	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35019852	35019855	0.46	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35019852	35019855	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35019856	35020153	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35020154	35020234	0.5	+	2	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35020154	35020234	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35020235	35020309	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35020310	35020590	1	+	2	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35020310	35020590	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35020591	35020680	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35020681	35020863	0.82	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35020681	35020863	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35020864	35021039	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35021040	35021138	0.85	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35021040	35021138	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35021139	35021259	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35021260	35021409	1	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35021260	35021409	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35021410	35021512	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35021513	35021659	0.94	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35021513	35021659	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35021660	35021742	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35021743	35021793	1	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35021743	35021793	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35021794	35021875	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35021876	35022066	1	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35021876	35022066	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35022067	35022149	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35022150	35022285	1	+	1	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35022150	35022285	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35022286	35022373	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35022374	35022471	1	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35022374	35022471	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35022472	35022542	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35022543	35022777	1	+	1	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35022543	35022777	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35022778	35022867	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35022868	35023071	1	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35022868	35023071	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35023072	35023162	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35023163	35023243	1	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35023163	35023243	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	intron	35023244	35023322	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	CDS	35023323	35023622	1	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	exon	35023323	35023622	.	+	.	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
Ledus.S1	AUGUSTUS	stop_codon	35023623	35023625	.	+	0	transcript_id "Ledus.S1G431400.t3"; gene_id "Ledus.S1G431400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9300.t1 is derived from g10330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5871365	5876730	.	+	.	Ledus.S3G077700
Ledus.S3	AUGUSTUS	transcript	5871365	5876730	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	start_codon	5871365	5871367	.	+	0	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5871365	5872122	0.65	+	0	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5871365	5872122	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5872123	5872497	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5872498	5872774	1	+	1	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5872498	5872774	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5872775	5872860	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5872861	5873232	1	+	0	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5872861	5873232	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5873233	5873312	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5873313	5873714	1	+	0	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5873313	5873714	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5873715	5873818	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5873819	5875065	1	+	0	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5873819	5875065	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5875066	5875151	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5875152	5875307	1	+	1	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5875152	5875307	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5875308	5875731	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5875732	5875966	1	+	1	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5875732	5875966	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5875967	5876048	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5876049	5876389	1	+	0	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5876049	5876389	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5876390	5876465	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5876466	5876730	0.99	+	1	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5876466	5876730	.	+	.	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	stop_codon	5876731	5876733	.	+	0	transcript_id "Ledus.S3G077700.t1"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	transcript	5871365	5876730	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	start_codon	5871365	5871367	.	+	0	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5871365	5872122	0.57	+	0	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5871365	5872122	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5872123	5872497	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5872498	5872774	1	+	1	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5872498	5872774	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5872775	5872860	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5872861	5873232	0.99	+	0	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5872861	5873232	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5873233	5873312	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5873313	5873714	0.99	+	0	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5873313	5873714	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5873715	5873818	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5873819	5875065	1	+	0	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5873819	5875065	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5875066	5875151	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5875152	5875307	1	+	1	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5875152	5875307	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5875308	5875731	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5875732	5875966	1	+	1	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5875732	5875966	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5875967	5876045	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5876046	5876389	1	+	0	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5876046	5876389	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	intron	5876390	5876465	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	CDS	5876466	5876730	1	+	1	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	exon	5876466	5876730	.	+	.	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
Ledus.S3	AUGUSTUS	stop_codon	5876731	5876733	.	+	0	transcript_id "Ledus.S3G077700.t2"; gene_id "Ledus.S3G077700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8660.t1 is derived from g9690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1188059	1188763	.	-	.	Ledus.S3G013700
Ledus.S3	AUGUSTUS	transcript	1188059	1188763	.	-	.	transcript_id "Ledus.S3G013700.t1"; gene_id "Ledus.S3G013700"
Ledus.S3	AUGUSTUS	stop_codon	1188056	1188058	.	-	0	transcript_id "Ledus.S3G013700.t1"; gene_id "Ledus.S3G013700"
Ledus.S3	AUGUSTUS	CDS	1188059	1188763	0.85	-	0	transcript_id "Ledus.S3G013700.t1"; gene_id "Ledus.S3G013700"
Ledus.S3	AUGUSTUS	exon	1188059	1188763	.	-	.	transcript_id "Ledus.S3G013700.t1"; gene_id "Ledus.S3G013700"
Ledus.S3	AUGUSTUS	start_codon	1188761	1188763	.	-	0	transcript_id "Ledus.S3G013700.t1"; gene_id "Ledus.S3G013700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3580.t1 is derived from g1016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9775433	9776719	.	-	.	Ledus.S1G100100
Ledus.S1	AUGUSTUS	transcript	9775433	9776719	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	stop_codon	9775430	9775432	.	-	0	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	CDS	9775433	9775507	0.68	-	0	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	exon	9775433	9775507	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	intron	9775508	9775604	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	CDS	9775605	9775683	1	-	1	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	exon	9775605	9775683	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	intron	9775684	9775761	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	CDS	9775762	9775827	1	-	1	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	exon	9775762	9775827	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	intron	9775828	9775913	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	CDS	9775914	9775967	1	-	1	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	exon	9775914	9775967	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	intron	9775968	9776063	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	CDS	9776064	9776159	1	-	1	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	exon	9776064	9776159	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	intron	9776160	9776251	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	CDS	9776252	9776309	1	-	2	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	exon	9776252	9776309	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	intron	9776310	9776389	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	CDS	9776390	9776438	1	-	0	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	exon	9776390	9776438	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	intron	9776439	9776518	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	CDS	9776519	9776719	0.99	-	0	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	exon	9776519	9776719	.	-	.	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
Ledus.S1	AUGUSTUS	start_codon	9776717	9776719	.	-	0	transcript_id "Ledus.S1G100100.t1"; gene_id "Ledus.S1G100100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11583.t1 is derived from g5201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5390866	5398187	.	-	.	Ledus.S4G073900
Ledus.S4	AUGUSTUS	transcript	5390866	5398187	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	stop_codon	5390863	5390865	.	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5390866	5391042	0.99	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5390866	5391042	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5391043	5391149	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5391150	5391245	0.97	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5391150	5391245	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5391246	5391351	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5391352	5391447	1	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5391352	5391447	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5391448	5391603	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5391604	5391681	1	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5391604	5391681	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5391682	5391823	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5391824	5391930	1	-	2	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5391824	5391930	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5391931	5392047	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5392048	5392182	1	-	2	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5392048	5392182	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5392183	5392272	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5392273	5392372	1	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5392273	5392372	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5392373	5392471	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5392472	5392650	0.96	-	2	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5392472	5392650	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5392651	5392751	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5392752	5392869	0.98	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5392752	5392869	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5392870	5392975	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5392976	5393047	0.84	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5392976	5393047	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5393048	5393189	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5393190	5393282	1	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5393190	5393282	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5393283	5393533	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5393534	5393692	1	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5393534	5393692	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5393693	5393886	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5393887	5394072	1	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5393887	5394072	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5394073	5394184	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5394185	5394277	0.99	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5394185	5394277	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5394278	5394526	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5394527	5394607	1	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5394527	5394607	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5394608	5394770	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5394771	5395001	1	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5394771	5395001	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5395002	5395177	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5395178	5395279	0.92	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5395178	5395279	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5395280	5395391	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5395392	5395601	0.88	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5395392	5395601	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5395602	5395858	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5395859	5395969	1	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5395859	5395969	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5395970	5396063	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5396064	5396231	0.99	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5396064	5396231	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5396232	5396404	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5396405	5396576	1	-	1	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5396405	5396576	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5396577	5396686	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5396687	5396753	1	-	2	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5396687	5396753	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5396754	5396884	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5396885	5397170	1	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5396885	5397170	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5397171	5397314	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5397315	5397379	1	-	2	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5397315	5397379	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5397380	5397624	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5397625	5397800	1	-	1	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5397625	5397800	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	intron	5397801	5398179	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	CDS	5398180	5398187	1	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	exon	5398180	5398187	.	-	.	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
Ledus.S4	AUGUSTUS	start_codon	5398185	5398187	.	-	0	transcript_id "Ledus.S4G073900.t1"; gene_id "Ledus.S4G073900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3361.t1 is derived from g796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7845769	7847220	.	+	.	Ledus.S1G078200
Ledus.S1	AUGUSTUS	transcript	7845769	7847220	.	+	.	transcript_id "Ledus.S1G078200.t1"; gene_id "Ledus.S1G078200"
Ledus.S1	AUGUSTUS	start_codon	7845769	7845771	.	+	0	transcript_id "Ledus.S1G078200.t1"; gene_id "Ledus.S1G078200"
Ledus.S1	AUGUSTUS	CDS	7845769	7847220	1	+	0	transcript_id "Ledus.S1G078200.t1"; gene_id "Ledus.S1G078200"
Ledus.S1	AUGUSTUS	exon	7845769	7847220	.	+	.	transcript_id "Ledus.S1G078200.t1"; gene_id "Ledus.S1G078200"
Ledus.S1	AUGUSTUS	stop_codon	7847221	7847223	.	+	0	transcript_id "Ledus.S1G078200.t1"; gene_id "Ledus.S1G078200"
# This transcript jg311.t2 is derived from g7172.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg312.t1 is derived from g7173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1575714	1577413	.	+	.	Ledus.S2G019400
Ledus.S2	AUGUSTUS	transcript	1575714	1577413	.	+	.	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	start_codon	1575714	1575716	.	+	0	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	CDS	1575714	1575853	0.97	+	0	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	exon	1575714	1575853	.	+	.	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	intron	1575854	1575996	.	+	.	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	CDS	1575997	1576072	1	+	1	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	exon	1575997	1576072	.	+	.	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	intron	1576073	1576186	.	+	.	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	CDS	1576187	1576337	0.99	+	0	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	exon	1576187	1576337	.	+	.	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	intron	1576338	1576425	.	+	.	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	CDS	1576426	1576515	0.99	+	2	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	exon	1576426	1576515	.	+	.	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	intron	1576516	1576637	.	+	.	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	CDS	1576638	1576793	0.92	+	2	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	exon	1576638	1576793	.	+	.	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	intron	1576794	1576883	.	+	.	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	CDS	1576884	1577413	1	+	2	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	exon	1576884	1577413	.	+	.	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
Ledus.S2	AUGUSTUS	stop_codon	1577414	1577416	.	+	0	transcript_id "Ledus.S2G019400.t1"; gene_id "Ledus.S2G019400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1334.t1 is derived from g8195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9306314	9309057	.	-	.	Ledus.S2G121600
Ledus.S2	AUGUSTUS	transcript	9306314	9309057	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	stop_codon	9306311	9306313	.	-	0	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9306314	9306411	0.97	-	2	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9306314	9306411	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	intron	9306412	9306522	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9306523	9306643	0.96	-	0	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9306523	9306643	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	intron	9306644	9306734	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9306735	9306809	1	-	0	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9306735	9306809	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	intron	9306810	9306934	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9306935	9307062	1	-	2	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9306935	9307062	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	intron	9307063	9307144	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9307145	9307361	0.92	-	0	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9307145	9307361	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	intron	9307362	9307466	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9307467	9307549	0.92	-	2	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9307467	9307549	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	intron	9307550	9307717	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9307718	9307844	1	-	0	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9307718	9307844	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	intron	9307845	9307989	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9307990	9308049	1	-	0	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9307990	9308049	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	intron	9308050	9308143	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9308144	9308254	1	-	0	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9308144	9308254	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	intron	9308255	9308341	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9308342	9308458	1	-	0	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9308342	9308458	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	intron	9308459	9308552	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9308553	9308702	1	-	0	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9308553	9308702	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	intron	9308703	9308779	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9308780	9308884	1	-	0	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9308780	9308884	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	intron	9308885	9308952	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	CDS	9308953	9309057	0.95	-	0	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	exon	9308953	9309057	.	-	.	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
Ledus.S2	AUGUSTUS	start_codon	9309055	9309057	.	-	0	transcript_id "Ledus.S2G121600.t1"; gene_id "Ledus.S2G121600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7105.t1 is derived from g6636.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1563802	1565693	.	+	.	Ledus.C7G016600
Ledus.C7	AUGUSTUS	transcript	1563802	1565693	.	+	.	transcript_id "Ledus.C7G016600.t1"; gene_id "Ledus.C7G016600"
Ledus.C7	AUGUSTUS	start_codon	1563802	1563804	.	+	0	transcript_id "Ledus.C7G016600.t1"; gene_id "Ledus.C7G016600"
Ledus.C7	AUGUSTUS	CDS	1563802	1564698	0.87	+	0	transcript_id "Ledus.C7G016600.t1"; gene_id "Ledus.C7G016600"
Ledus.C7	AUGUSTUS	exon	1563802	1564698	.	+	.	transcript_id "Ledus.C7G016600.t1"; gene_id "Ledus.C7G016600"
Ledus.C7	AUGUSTUS	intron	1564699	1564904	.	+	.	transcript_id "Ledus.C7G016600.t1"; gene_id "Ledus.C7G016600"
Ledus.C7	AUGUSTUS	CDS	1564905	1565693	1	+	0	transcript_id "Ledus.C7G016600.t1"; gene_id "Ledus.C7G016600"
Ledus.C7	AUGUSTUS	exon	1564905	1565693	.	+	.	transcript_id "Ledus.C7G016600.t1"; gene_id "Ledus.C7G016600"
Ledus.C7	AUGUSTUS	stop_codon	1565694	1565696	.	+	0	transcript_id "Ledus.C7G016600.t1"; gene_id "Ledus.C7G016600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12942.t1 is derived from g6752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	210302	210598	.	+	.	Ledus.S6G000400
Ledus.S6	AUGUSTUS	transcript	210302	210598	.	+	.	transcript_id "Ledus.S6G000400.t1"; gene_id "Ledus.S6G000400"
Ledus.S6	AUGUSTUS	start_codon	210302	210304	.	+	0	transcript_id "Ledus.S6G000400.t1"; gene_id "Ledus.S6G000400"
Ledus.S6	AUGUSTUS	CDS	210302	210598	0.94	+	0	transcript_id "Ledus.S6G000400.t1"; gene_id "Ledus.S6G000400"
Ledus.S6	AUGUSTUS	exon	210302	210598	.	+	.	transcript_id "Ledus.S6G000400.t1"; gene_id "Ledus.S6G000400"
Ledus.S6	AUGUSTUS	stop_codon	210599	210601	.	+	0	transcript_id "Ledus.S6G000400.t1"; gene_id "Ledus.S6G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9281.t1 is derived from g10311.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5765169	5766692	.	+	.	Ledus.S3G075800
Ledus.S3	AUGUSTUS	transcript	5765169	5766692	.	+	.	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	start_codon	5765169	5765171	.	+	0	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	CDS	5765169	5765774	0.43	+	0	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	exon	5765169	5765774	.	+	.	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	intron	5765775	5765872	.	+	.	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	CDS	5765873	5766064	1	+	0	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	exon	5765873	5766064	.	+	.	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	intron	5766065	5766173	.	+	.	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	CDS	5766174	5766380	1	+	0	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	exon	5766174	5766380	.	+	.	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	intron	5766381	5766464	.	+	.	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	CDS	5766465	5766692	1	+	0	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	exon	5766465	5766692	.	+	.	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
Ledus.S3	AUGUSTUS	stop_codon	5766693	5766695	.	+	0	transcript_id "Ledus.S3G075800.t1"; gene_id "Ledus.S3G075800"
# This transcript jg9603.t2 is derived from g10633.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9603.t3 is derived from g10633.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9604.t1 is derived from g10634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8294292	8295542	.	+	.	Ledus.S3G108100
Ledus.S3	AUGUSTUS	transcript	8294292	8295542	.	+	.	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	start_codon	8294292	8294294	.	+	0	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	CDS	8294292	8294582	0.83	+	0	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	exon	8294292	8294582	.	+	.	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	intron	8294583	8294708	.	+	.	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	CDS	8294709	8294810	1	+	0	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	exon	8294709	8294810	.	+	.	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	intron	8294811	8294971	.	+	.	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	CDS	8294972	8295083	0.35	+	0	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	exon	8294972	8295083	.	+	.	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	intron	8295084	8295220	.	+	.	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	CDS	8295221	8295251	0.57	+	2	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	exon	8295221	8295251	.	+	.	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	intron	8295252	8295496	.	+	.	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	CDS	8295497	8295542	0.62	+	1	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	exon	8295497	8295542	.	+	.	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
Ledus.S3	AUGUSTUS	stop_codon	8295543	8295545	.	+	0	transcript_id "Ledus.S3G108100.t1"; gene_id "Ledus.S3G108100"
# This transcript jg1227.t2 is derived from g8088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1228.t1 is derived from g8089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8744852	8748472	.	+	.	Ledus.S2G111000
Ledus.S2	AUGUSTUS	transcript	8744852	8748472	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	start_codon	8744852	8744854	.	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8744852	8745040	0.87	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8744852	8745040	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8745041	8745118	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8745119	8745418	1	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8745119	8745418	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8745419	8745503	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8745504	8745692	0.55	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8745504	8745692	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8745693	8745803	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8745804	8746136	0.58	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8745804	8746136	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8746137	8746250	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8746251	8746304	0.99	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8746251	8746304	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8746305	8746432	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8746433	8746498	0.95	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8746433	8746498	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8746499	8746631	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8746632	8746720	1	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8746632	8746720	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8746721	8746817	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8746818	8746914	1	+	1	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8746818	8746914	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8746915	8746989	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8746990	8747162	1	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8746990	8747162	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8747163	8747266	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8747267	8747306	0.68	+	1	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8747267	8747306	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8747307	8747440	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8747441	8747565	0.92	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8747441	8747565	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8747566	8747676	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8747677	8747752	0.93	+	1	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8747677	8747752	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8747753	8747851	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8747852	8747941	1	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8747852	8747941	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8747942	8748041	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8748042	8748231	0.66	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8748042	8748231	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	intron	8748232	8748335	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	CDS	8748336	8748472	0.62	+	2	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	exon	8748336	8748472	.	+	.	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
Ledus.S2	AUGUSTUS	stop_codon	8748473	8748475	.	+	0	transcript_id "Ledus.S2G111000.t1"; gene_id "Ledus.S2G111000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8449.t1 is derived from g13121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11743522	11747262	.	+	.	Ledus.S5G122700
Ledus.S5	AUGUSTUS	transcript	11743522	11747262	.	+	.	transcript_id "Ledus.S5G122700.t1"; gene_id "Ledus.S5G122700"
Ledus.S5	AUGUSTUS	start_codon	11743522	11743524	.	+	0	transcript_id "Ledus.S5G122700.t1"; gene_id "Ledus.S5G122700"
Ledus.S5	AUGUSTUS	CDS	11743522	11747262	0.64	+	0	transcript_id "Ledus.S5G122700.t1"; gene_id "Ledus.S5G122700"
Ledus.S5	AUGUSTUS	exon	11743522	11747262	.	+	.	transcript_id "Ledus.S5G122700.t1"; gene_id "Ledus.S5G122700"
Ledus.S5	AUGUSTUS	stop_codon	11747263	11747265	.	+	0	transcript_id "Ledus.S5G122700.t1"; gene_id "Ledus.S5G122700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8021.t1 is derived from g12692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8561198	8562303	.	+	.	Ledus.S5G079900
Ledus.S5	AUGUSTUS	transcript	8561198	8562303	.	+	.	transcript_id "Ledus.S5G079900.t1"; gene_id "Ledus.S5G079900"
Ledus.S5	AUGUSTUS	start_codon	8561198	8561200	.	+	0	transcript_id "Ledus.S5G079900.t1"; gene_id "Ledus.S5G079900"
Ledus.S5	AUGUSTUS	CDS	8561198	8561355	0.58	+	0	transcript_id "Ledus.S5G079900.t1"; gene_id "Ledus.S5G079900"
Ledus.S5	AUGUSTUS	exon	8561198	8561355	.	+	.	transcript_id "Ledus.S5G079900.t1"; gene_id "Ledus.S5G079900"
Ledus.S5	AUGUSTUS	intron	8561356	8561527	.	+	.	transcript_id "Ledus.S5G079900.t1"; gene_id "Ledus.S5G079900"
Ledus.S5	AUGUSTUS	CDS	8561528	8561954	0.21	+	1	transcript_id "Ledus.S5G079900.t1"; gene_id "Ledus.S5G079900"
Ledus.S5	AUGUSTUS	exon	8561528	8561954	.	+	.	transcript_id "Ledus.S5G079900.t1"; gene_id "Ledus.S5G079900"
Ledus.S5	AUGUSTUS	intron	8561955	8562030	.	+	.	transcript_id "Ledus.S5G079900.t1"; gene_id "Ledus.S5G079900"
Ledus.S5	AUGUSTUS	CDS	8562031	8562303	0.9	+	0	transcript_id "Ledus.S5G079900.t1"; gene_id "Ledus.S5G079900"
Ledus.S5	AUGUSTUS	exon	8562031	8562303	.	+	.	transcript_id "Ledus.S5G079900.t1"; gene_id "Ledus.S5G079900"
Ledus.S5	AUGUSTUS	stop_codon	8562304	8562306	.	+	0	transcript_id "Ledus.S5G079900.t1"; gene_id "Ledus.S5G079900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2789.t1 is derived from g223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3713815	3715533	.	-	.	Ledus.S1G021000
Ledus.S1	AUGUSTUS	transcript	3713815	3715533	.	-	.	transcript_id "Ledus.S1G021000.t1"; gene_id "Ledus.S1G021000"
Ledus.S1	AUGUSTUS	stop_codon	3713812	3713814	.	-	0	transcript_id "Ledus.S1G021000.t1"; gene_id "Ledus.S1G021000"
Ledus.S1	AUGUSTUS	CDS	3713815	3715533	0.98	-	0	transcript_id "Ledus.S1G021000.t1"; gene_id "Ledus.S1G021000"
Ledus.S1	AUGUSTUS	exon	3713815	3715533	.	-	.	transcript_id "Ledus.S1G021000.t1"; gene_id "Ledus.S1G021000"
Ledus.S1	AUGUSTUS	start_codon	3715531	3715533	.	-	0	transcript_id "Ledus.S1G021000.t1"; gene_id "Ledus.S1G021000"
Ledus.S1	AUGUSTUS	transcript	3713815	3714501	.	-	.	transcript_id "Ledus.S1G021000.t2"; gene_id "Ledus.S1G021000"
Ledus.S1	AUGUSTUS	stop_codon	3713812	3713814	.	-	0	transcript_id "Ledus.S1G021000.t2"; gene_id "Ledus.S1G021000"
Ledus.S1	AUGUSTUS	CDS	3713815	3714501	0.97	-	0	transcript_id "Ledus.S1G021000.t2"; gene_id "Ledus.S1G021000"
Ledus.S1	AUGUSTUS	exon	3713815	3714501	.	-	.	transcript_id "Ledus.S1G021000.t2"; gene_id "Ledus.S1G021000"
Ledus.S1	AUGUSTUS	start_codon	3714499	3714501	.	-	0	transcript_id "Ledus.S1G021000.t2"; gene_id "Ledus.S1G021000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6805.t1 is derived from g4249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34331143	34331439	.	+	.	Ledus.S1G422600
Ledus.S1	AUGUSTUS	transcript	34331143	34331439	.	+	.	transcript_id "Ledus.S1G422600.t1"; gene_id "Ledus.S1G422600"
Ledus.S1	AUGUSTUS	start_codon	34331143	34331145	.	+	0	transcript_id "Ledus.S1G422600.t1"; gene_id "Ledus.S1G422600"
Ledus.S1	AUGUSTUS	CDS	34331143	34331439	0.54	+	0	transcript_id "Ledus.S1G422600.t1"; gene_id "Ledus.S1G422600"
Ledus.S1	AUGUSTUS	exon	34331143	34331439	.	+	.	transcript_id "Ledus.S1G422600.t1"; gene_id "Ledus.S1G422600"
Ledus.S1	AUGUSTUS	stop_codon	34331440	34331442	.	+	0	transcript_id "Ledus.S1G422600.t1"; gene_id "Ledus.S1G422600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9919.t1 is derived from g10949.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11211093	11222781	.	+	.	Ledus.S3G139600
Ledus.S3	AUGUSTUS	transcript	11211093	11222781	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	start_codon	11211093	11211095	.	+	0	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	CDS	11211093	11214459	0.64	+	0	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	exon	11211093	11214459	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	intron	11214460	11214707	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	CDS	11214708	11214943	1	+	2	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	exon	11214708	11214943	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	intron	11214944	11215191	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	CDS	11215192	11217854	0.95	+	0	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	exon	11215192	11217854	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	intron	11217855	11217963	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	CDS	11217964	11218990	0.93	+	1	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	exon	11217964	11218990	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	intron	11218991	11219083	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	CDS	11219084	11219242	1	+	0	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	exon	11219084	11219242	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	intron	11219243	11219385	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	CDS	11219386	11219516	0.72	+	0	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	exon	11219386	11219516	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	intron	11219517	11219621	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	CDS	11219622	11222241	0.78	+	1	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	exon	11219622	11222241	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	intron	11222242	11222324	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	CDS	11222325	11222339	0.82	+	0	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	exon	11222325	11222339	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	intron	11222340	11222512	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	CDS	11222513	11222608	1	+	0	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	exon	11222513	11222608	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	intron	11222609	11222760	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	CDS	11222761	11222781	1	+	0	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	exon	11222761	11222781	.	+	.	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
Ledus.S3	AUGUSTUS	stop_codon	11222782	11222784	.	+	0	transcript_id "Ledus.S3G139600.t1"; gene_id "Ledus.S3G139600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11193.t1 is derived from g4811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2605337	2608479	.	+	.	Ledus.S4G034900
Ledus.S4	AUGUSTUS	transcript	2605337	2608479	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	start_codon	2605337	2605339	.	+	0	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	CDS	2605337	2605427	0.84	+	0	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	exon	2605337	2605427	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	intron	2605428	2605525	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	CDS	2605526	2605569	1	+	2	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	exon	2605526	2605569	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	intron	2605570	2605670	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	CDS	2605671	2605755	1	+	0	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	exon	2605671	2605755	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	intron	2605756	2605874	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	CDS	2605875	2605963	1	+	2	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	exon	2605875	2605963	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	intron	2605964	2606065	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	CDS	2606066	2606093	0.9	+	0	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	exon	2606066	2606093	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	intron	2606094	2606222	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	CDS	2606223	2606310	1	+	2	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	exon	2606223	2606310	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	intron	2606311	2606539	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	CDS	2606540	2606606	1	+	1	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	exon	2606540	2606606	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	intron	2606607	2606991	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	CDS	2606992	2607112	1	+	0	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	exon	2606992	2607112	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	intron	2607113	2607227	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	CDS	2607228	2607619	0.99	+	2	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	exon	2607228	2607619	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	intron	2607620	2607727	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	CDS	2607728	2608108	1	+	0	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	exon	2607728	2608108	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	intron	2608109	2608224	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	CDS	2608225	2608329	1	+	0	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	exon	2608225	2608329	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	intron	2608330	2608419	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	CDS	2608420	2608479	1	+	0	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	exon	2608420	2608479	.	+	.	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
Ledus.S4	AUGUSTUS	stop_codon	2608480	2608482	.	+	0	transcript_id "Ledus.S4G034900.t1"; gene_id "Ledus.S4G034900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3390.t1 is derived from g825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8028124	8029434	.	-	.	Ledus.S1G081100
Ledus.S1	AUGUSTUS	transcript	8028124	8029434	.	-	.	transcript_id "Ledus.S1G081100.t1"; gene_id "Ledus.S1G081100"
Ledus.S1	AUGUSTUS	stop_codon	8028121	8028123	.	-	0	transcript_id "Ledus.S1G081100.t1"; gene_id "Ledus.S1G081100"
Ledus.S1	AUGUSTUS	CDS	8028124	8028743	1	-	2	transcript_id "Ledus.S1G081100.t1"; gene_id "Ledus.S1G081100"
Ledus.S1	AUGUSTUS	exon	8028124	8028743	.	-	.	transcript_id "Ledus.S1G081100.t1"; gene_id "Ledus.S1G081100"
Ledus.S1	AUGUSTUS	intron	8028744	8028833	.	-	.	transcript_id "Ledus.S1G081100.t1"; gene_id "Ledus.S1G081100"
Ledus.S1	AUGUSTUS	CDS	8028834	8029434	0.9	-	0	transcript_id "Ledus.S1G081100.t1"; gene_id "Ledus.S1G081100"
Ledus.S1	AUGUSTUS	exon	8028834	8029434	.	-	.	transcript_id "Ledus.S1G081100.t1"; gene_id "Ledus.S1G081100"
Ledus.S1	AUGUSTUS	start_codon	8029432	8029434	.	-	0	transcript_id "Ledus.S1G081100.t1"; gene_id "Ledus.S1G081100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg531.t1 is derived from g7392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3062920	3063219	.	-	.	Ledus.S2G041300
Ledus.S2	AUGUSTUS	transcript	3062920	3063219	.	-	.	transcript_id "Ledus.S2G041300.t1"; gene_id "Ledus.S2G041300"
Ledus.S2	AUGUSTUS	stop_codon	3062917	3062919	.	-	0	transcript_id "Ledus.S2G041300.t1"; gene_id "Ledus.S2G041300"
Ledus.S2	AUGUSTUS	CDS	3062920	3063219	0.53	-	0	transcript_id "Ledus.S2G041300.t1"; gene_id "Ledus.S2G041300"
Ledus.S2	AUGUSTUS	exon	3062920	3063219	.	-	.	transcript_id "Ledus.S2G041300.t1"; gene_id "Ledus.S2G041300"
Ledus.S2	AUGUSTUS	start_codon	3063217	3063219	.	-	0	transcript_id "Ledus.S2G041300.t1"; gene_id "Ledus.S2G041300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4291.t1 is derived from g1727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16079927	16082020	.	-	.	Ledus.S1G171200
Ledus.S1	AUGUSTUS	transcript	16079927	16082020	.	-	.	transcript_id "Ledus.S1G171200.t1"; gene_id "Ledus.S1G171200"
Ledus.S1	AUGUSTUS	stop_codon	16079924	16079926	.	-	0	transcript_id "Ledus.S1G171200.t1"; gene_id "Ledus.S1G171200"
Ledus.S1	AUGUSTUS	CDS	16079927	16082020	0.96	-	0	transcript_id "Ledus.S1G171200.t1"; gene_id "Ledus.S1G171200"
Ledus.S1	AUGUSTUS	exon	16079927	16082020	.	-	.	transcript_id "Ledus.S1G171200.t1"; gene_id "Ledus.S1G171200"
Ledus.S1	AUGUSTUS	start_codon	16082018	16082020	.	-	0	transcript_id "Ledus.S1G171200.t1"; gene_id "Ledus.S1G171200"
Ledus.S1	AUGUSTUS	transcript	16080336	16082020	.	-	.	transcript_id "Ledus.S1G171200.t2"; gene_id "Ledus.S1G171200"
Ledus.S1	AUGUSTUS	stop_codon	16080333	16080335	.	-	0	transcript_id "Ledus.S1G171200.t2"; gene_id "Ledus.S1G171200"
Ledus.S1	AUGUSTUS	CDS	16080336	16080347	0.38	-	0	transcript_id "Ledus.S1G171200.t2"; gene_id "Ledus.S1G171200"
Ledus.S1	AUGUSTUS	exon	16080336	16080347	.	-	.	transcript_id "Ledus.S1G171200.t2"; gene_id "Ledus.S1G171200"
Ledus.S1	AUGUSTUS	intron	16080348	16080436	.	-	.	transcript_id "Ledus.S1G171200.t2"; gene_id "Ledus.S1G171200"
Ledus.S1	AUGUSTUS	CDS	16080437	16082020	0.26	-	0	transcript_id "Ledus.S1G171200.t2"; gene_id "Ledus.S1G171200"
Ledus.S1	AUGUSTUS	exon	16080437	16082020	.	-	.	transcript_id "Ledus.S1G171200.t2"; gene_id "Ledus.S1G171200"
Ledus.S1	AUGUSTUS	start_codon	16082018	16082020	.	-	0	transcript_id "Ledus.S1G171200.t2"; gene_id "Ledus.S1G171200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9434.t1 is derived from g10464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6709926	6712112	.	+	.	Ledus.S3G091100
Ledus.S3	AUGUSTUS	transcript	6709926	6712112	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	start_codon	6709926	6709928	.	+	0	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	CDS	6709926	6710053	1	+	0	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	exon	6709926	6710053	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	intron	6710054	6710146	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	CDS	6710147	6710356	1	+	1	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	exon	6710147	6710356	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	intron	6710357	6710441	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	CDS	6710442	6710537	1	+	1	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	exon	6710442	6710537	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	intron	6710538	6710683	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	CDS	6710684	6710798	1	+	1	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	exon	6710684	6710798	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	intron	6710799	6710938	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	CDS	6710939	6711019	1	+	0	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	exon	6710939	6711019	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	intron	6711020	6711115	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	CDS	6711116	6711304	1	+	0	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	exon	6711116	6711304	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	intron	6711305	6711380	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	CDS	6711381	6712112	1	+	0	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	exon	6711381	6712112	.	+	.	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
Ledus.S3	AUGUSTUS	stop_codon	6712113	6712115	.	+	0	transcript_id "Ledus.S3G091100.t1"; gene_id "Ledus.S3G091100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9006.t1 is derived from g10036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3827622	3828371	.	-	.	Ledus.S3G048300
Ledus.S3	AUGUSTUS	transcript	3827622	3828371	.	-	.	transcript_id "Ledus.S3G048300.t1"; gene_id "Ledus.S3G048300"
Ledus.S3	AUGUSTUS	stop_codon	3827619	3827621	.	-	0	transcript_id "Ledus.S3G048300.t1"; gene_id "Ledus.S3G048300"
Ledus.S3	AUGUSTUS	CDS	3827622	3828371	0.94	-	0	transcript_id "Ledus.S3G048300.t1"; gene_id "Ledus.S3G048300"
Ledus.S3	AUGUSTUS	exon	3827622	3828371	.	-	.	transcript_id "Ledus.S3G048300.t1"; gene_id "Ledus.S3G048300"
Ledus.S3	AUGUSTUS	start_codon	3828369	3828371	.	-	0	transcript_id "Ledus.S3G048300.t1"; gene_id "Ledus.S3G048300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2300.t1 is derived from g9163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17095262	17096440	.	-	.	Ledus.S2G218200
Ledus.S2	AUGUSTUS	transcript	17095262	17096440	.	-	.	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	stop_codon	17095259	17095261	.	-	0	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	CDS	17095262	17095412	1	-	1	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	exon	17095262	17095412	.	-	.	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	intron	17095413	17095504	.	-	.	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	CDS	17095505	17095653	1	-	0	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	exon	17095505	17095653	.	-	.	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	intron	17095654	17095831	.	-	.	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	CDS	17095832	17095933	1	-	0	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	exon	17095832	17095933	.	-	.	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	intron	17095934	17096044	.	-	.	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	CDS	17096045	17096120	1	-	1	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	exon	17096045	17096120	.	-	.	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	intron	17096121	17096219	.	-	.	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	CDS	17096220	17096440	0.84	-	0	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	exon	17096220	17096440	.	-	.	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
Ledus.S2	AUGUSTUS	start_codon	17096438	17096440	.	-	0	transcript_id "Ledus.S2G218200.t1"; gene_id "Ledus.S2G218200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg2868.t1 is derived from g302.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4277645	4293993	.	-	.	Ledus.S1G028900
Ledus.S1	AUGUSTUS	transcript	4277645	4293993	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	stop_codon	4277642	4277644	.	-	0	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4277645	4277774	0.77	-	1	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4277645	4277774	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4277775	4277859	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4277860	4277899	0.76	-	2	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4277860	4277899	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4277900	4278047	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4278048	4278161	0.56	-	2	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4278048	4278161	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4278162	4278342	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4278343	4278362	0.94	-	1	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4278343	4278362	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4278363	4278556	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4278557	4278650	0.49	-	2	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4278557	4278650	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4278651	4278747	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4278748	4279921	0.97	-	0	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4278748	4279921	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4279922	4280019	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4280020	4280604	0.55	-	0	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4280020	4280604	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4280605	4280713	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4280714	4280850	0.91	-	2	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4280714	4280850	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4280851	4280931	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4280932	4281114	0.54	-	2	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4280932	4281114	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4281115	4281246	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4281247	4281465	0.99	-	2	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4281247	4281465	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4281466	4281567	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4281568	4282204	0.57	-	0	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4281568	4282204	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4282205	4282382	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4282383	4283208	1	-	1	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4282383	4283208	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4283209	4283310	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4283311	4283534	0.98	-	0	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4283311	4283534	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4283535	4283682	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4283683	4284720	0.98	-	0	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4283683	4284720	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4284721	4284928	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4284929	4285169	1	-	1	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4284929	4285169	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4285170	4285338	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4285339	4285369	0.99	-	2	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4285339	4285369	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4285370	4285483	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4285484	4285820	0.84	-	0	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4285484	4285820	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4285821	4286049	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4286050	4286162	0.62	-	2	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4286050	4286162	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4286163	4286324	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4286325	4286619	0.75	-	0	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4286325	4286619	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4286620	4286753	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4286754	4288108	0.96	-	2	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4286754	4288108	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4288109	4288256	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4288257	4288643	0.9	-	2	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4288257	4288643	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4288644	4288807	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4288808	4289680	0.96	-	2	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4288808	4289680	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4289681	4289898	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4289899	4291564	0.95	-	0	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4289899	4291564	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4291565	4291729	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4291730	4292681	0.44	-	1	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4291730	4292681	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4292682	4292845	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4292846	4293226	0.99	-	1	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4292846	4293226	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4293227	4293330	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4293331	4293709	0.97	-	2	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4293331	4293709	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4293710	4293804	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4293805	4293904	1	-	0	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4293805	4293904	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4293905	4293990	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4293991	4293993	1	-	0	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4293991	4293993	.	-	.	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	start_codon	4293991	4293993	.	-	0	transcript_id "Ledus.S1G028900.t1"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	transcript	4277645	4293993	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	stop_codon	4277642	4277644	.	-	0	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4277645	4277774	0.72	-	1	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4277645	4277774	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4277775	4277859	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4277860	4277899	0.72	-	2	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4277860	4277899	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4277900	4278047	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4278048	4278161	0.49	-	2	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4278048	4278161	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4278162	4278342	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4278343	4278362	0.93	-	1	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4278343	4278362	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4278363	4278556	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4278557	4278650	0.46	-	2	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4278557	4278650	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4278651	4278747	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4278748	4279921	0.97	-	0	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4278748	4279921	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4279922	4280019	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4280020	4280604	0.61	-	0	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4280020	4280604	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4280605	4280713	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4280714	4280850	0.96	-	2	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4280714	4280850	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4280851	4280931	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4280932	4281114	0.6	-	2	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4280932	4281114	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4281115	4281246	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4281247	4281465	0.97	-	2	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4281247	4281465	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4281466	4281567	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4281568	4282204	0.49	-	0	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4281568	4282204	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4282205	4282382	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4282383	4283208	1	-	1	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4282383	4283208	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4283209	4283310	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4283311	4283534	0.98	-	0	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4283311	4283534	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4283535	4283682	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4283683	4284720	0.98	-	0	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4283683	4284720	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4284721	4284928	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4284929	4285169	1	-	1	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4284929	4285169	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4285170	4285446	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4285447	4285820	0.79	-	0	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4285447	4285820	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4285821	4286049	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4286050	4286162	0.67	-	2	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4286050	4286162	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4286163	4286324	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4286325	4286619	0.86	-	0	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4286325	4286619	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4286620	4286753	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4286754	4288108	0.92	-	2	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4286754	4288108	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4288109	4288256	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4288257	4288643	0.95	-	2	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4288257	4288643	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4288644	4288807	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4288808	4289680	0.95	-	2	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4288808	4289680	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4289681	4289898	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4289899	4291472	0.85	-	1	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4289899	4291472	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4291473	4291564	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4291565	4291569	0.87	-	0	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4291565	4291569	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4291570	4291729	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4291730	4292681	0.39	-	1	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4291730	4292681	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4292682	4292845	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4292846	4293226	0.95	-	1	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4292846	4293226	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4293227	4293330	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4293331	4293709	0.93	-	2	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4293331	4293709	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4293710	4293804	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4293805	4293904	1	-	0	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4293805	4293904	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4293905	4293990	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4293991	4293993	1	-	0	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4293991	4293993	.	-	.	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	start_codon	4293991	4293993	.	-	0	transcript_id "Ledus.S1G028900.t2"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	transcript	4277645	4293993	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	stop_codon	4277642	4277644	.	-	0	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4277645	4277774	0.73	-	1	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4277645	4277774	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4277775	4277859	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4277860	4277899	0.72	-	2	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4277860	4277899	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4277900	4278047	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4278048	4278161	0.51	-	2	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4278048	4278161	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4278162	4278342	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4278343	4278362	0.84	-	1	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4278343	4278362	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4278363	4278556	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4278557	4278650	0.44	-	2	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4278557	4278650	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4278651	4278747	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4278748	4279921	0.93	-	0	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4278748	4279921	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4279922	4280019	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4280020	4280604	0.64	-	0	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4280020	4280604	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4280605	4280713	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4280714	4280850	0.86	-	2	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4280714	4280850	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4280851	4280931	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4280932	4281114	0.59	-	2	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4280932	4281114	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4281115	4281246	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4281247	4281465	0.99	-	2	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4281247	4281465	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4281466	4281567	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4281568	4282204	0.49	-	0	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4281568	4282204	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4282205	4282382	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4282383	4283208	1	-	1	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4282383	4283208	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4283209	4283310	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4283311	4283534	1	-	0	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4283311	4283534	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4283535	4283682	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4283683	4284720	0.97	-	0	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4283683	4284720	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4284721	4284928	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4284929	4285169	1	-	1	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4284929	4285169	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4285170	4285446	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4285447	4285820	0.8	-	0	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4285447	4285820	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4285821	4286049	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4286050	4286162	0.59	-	2	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4286050	4286162	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4286163	4286324	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4286325	4286619	0.78	-	0	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4286325	4286619	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4286620	4286753	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4286754	4288108	0.95	-	2	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4286754	4288108	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4288109	4288256	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4288257	4288643	0.94	-	2	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4288257	4288643	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4288644	4288807	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4288808	4289680	0.96	-	2	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4288808	4289680	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4289681	4289898	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4289899	4291564	0.96	-	0	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4289899	4291564	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4291565	4291729	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4291730	4292681	0.5	-	1	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4291730	4292681	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4292682	4292845	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4292846	4293226	0.99	-	1	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4292846	4293226	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4293227	4293330	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4293331	4293709	0.97	-	2	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4293331	4293709	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4293710	4293804	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4293805	4293904	1	-	0	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4293805	4293904	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	intron	4293905	4293990	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	CDS	4293991	4293993	1	-	0	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	exon	4293991	4293993	.	-	.	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
Ledus.S1	AUGUSTUS	start_codon	4293991	4293993	.	-	0	transcript_id "Ledus.S1G028900.t3"; gene_id "Ledus.S1G028900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9737.t1 is derived from g10767.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9498648	9502674	.	-	.	Ledus.S3G121400
Ledus.S3	AUGUSTUS	transcript	9498648	9502674	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	stop_codon	9498554	9498556	.	-	0	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	CDS	9498648	9498702	1	-	1	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	exon	9498648	9498702	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	intron	9498703	9498809	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	CDS	9498810	9498980	0.5	-	1	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	exon	9498810	9498980	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	intron	9498981	9499095	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	CDS	9499096	9499137	0.85	-	1	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	exon	9499096	9499137	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	intron	9499138	9499316	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	CDS	9499317	9499540	1	-	0	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	exon	9499317	9499540	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	intron	9499541	9499662	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	CDS	9499663	9499723	1	-	1	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	exon	9499663	9499723	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	intron	9499724	9499853	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	CDS	9499854	9501408	0.73	-	2	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	exon	9499854	9501408	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	intron	9501409	9501530	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	CDS	9501531	9501890	0.82	-	2	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	exon	9501531	9501890	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	intron	9501891	9502553	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	CDS	9502554	9502674	0.85	-	0	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	exon	9502554	9502674	.	-	.	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
Ledus.S3	AUGUSTUS	start_codon	9502672	9502674	.	-	0	transcript_id "Ledus.S3G121400.t1"; gene_id "Ledus.S3G121400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10785.t1 is derived from g11817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17690821	17693893	.	+	.	Ledus.S3G226200
Ledus.S3	AUGUSTUS	transcript	17690879	17693893	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	start_codon	17690879	17690881	.	+	0	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17690879	17690980	0.81	+	0	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17690879	17690980	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17690981	17692203	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17692204	17692706	1	+	0	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17692204	17692706	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17692707	17692829	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17692830	17692902	1	+	1	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17692830	17692902	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17692903	17693071	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17693072	17693152	1	+	0	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17693072	17693152	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17693153	17693255	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17693256	17693319	1	+	0	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17693256	17693319	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17693320	17693429	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17693430	17693517	1	+	2	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17693430	17693517	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17693518	17693622	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17693623	17693707	0.91	+	1	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17693623	17693707	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17693708	17693806	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17693807	17693893	0.98	+	0	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17693807	17693893	.	+	.	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	stop_codon	17693894	17693896	.	+	0	transcript_id "Ledus.S3G226200.t1"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	transcript	17690821	17693893	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	start_codon	17690821	17690823	.	+	0	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17690821	17690980	0.28	+	0	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17690821	17690980	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17690981	17691080	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17691081	17691226	0.19	+	2	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17691081	17691226	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17691227	17692203	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17692204	17692706	0.4	+	0	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17692204	17692706	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17692707	17692829	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17692830	17692902	1	+	1	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17692830	17692902	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17692903	17693071	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17693072	17693152	1	+	0	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17693072	17693152	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17693153	17693255	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17693256	17693319	1	+	0	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17693256	17693319	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17693320	17693429	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17693430	17693517	0.97	+	2	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17693430	17693517	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17693518	17693622	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17693623	17693707	0.93	+	1	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17693623	17693707	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	intron	17693708	17693806	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	CDS	17693807	17693893	0.96	+	0	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	exon	17693807	17693893	.	+	.	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
Ledus.S3	AUGUSTUS	stop_codon	17693894	17693896	.	+	0	transcript_id "Ledus.S3G226200.t2"; gene_id "Ledus.S3G226200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2783.t1 is derived from g217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3694378	3694933	.	-	.	Ledus.S1G020400
Ledus.S1	AUGUSTUS	transcript	3694378	3694933	.	-	.	transcript_id "Ledus.S1G020400.t1"; gene_id "Ledus.S1G020400"
Ledus.S1	AUGUSTUS	stop_codon	3694375	3694377	.	-	0	transcript_id "Ledus.S1G020400.t1"; gene_id "Ledus.S1G020400"
Ledus.S1	AUGUSTUS	CDS	3694378	3694530	0.94	-	0	transcript_id "Ledus.S1G020400.t1"; gene_id "Ledus.S1G020400"
Ledus.S1	AUGUSTUS	exon	3694378	3694530	.	-	.	transcript_id "Ledus.S1G020400.t1"; gene_id "Ledus.S1G020400"
Ledus.S1	AUGUSTUS	intron	3694531	3694703	.	-	.	transcript_id "Ledus.S1G020400.t1"; gene_id "Ledus.S1G020400"
Ledus.S1	AUGUSTUS	CDS	3694704	3694862	0.83	-	0	transcript_id "Ledus.S1G020400.t1"; gene_id "Ledus.S1G020400"
Ledus.S1	AUGUSTUS	exon	3694704	3694862	.	-	.	transcript_id "Ledus.S1G020400.t1"; gene_id "Ledus.S1G020400"
Ledus.S1	AUGUSTUS	intron	3694863	3694927	.	-	.	transcript_id "Ledus.S1G020400.t1"; gene_id "Ledus.S1G020400"
Ledus.S1	AUGUSTUS	CDS	3694928	3694933	0.31	-	0	transcript_id "Ledus.S1G020400.t1"; gene_id "Ledus.S1G020400"
Ledus.S1	AUGUSTUS	exon	3694928	3694933	.	-	.	transcript_id "Ledus.S1G020400.t1"; gene_id "Ledus.S1G020400"
Ledus.S1	AUGUSTUS	start_codon	3694931	3694933	.	-	0	transcript_id "Ledus.S1G020400.t1"; gene_id "Ledus.S1G020400"
# This transcript jg1426.t1 is derived from g8286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9989880	9990137	.	+	.	Ledus.S2G130700
Ledus.S2	AUGUSTUS	transcript	9989880	9990137	.	+	.	transcript_id "Ledus.S2G130700.t1"; gene_id "Ledus.S2G130700"
Ledus.S2	AUGUSTUS	start_codon	9989880	9989882	.	+	0	transcript_id "Ledus.S2G130700.t1"; gene_id "Ledus.S2G130700"
Ledus.S2	AUGUSTUS	CDS	9989880	9990137	0.8	+	0	transcript_id "Ledus.S2G130700.t1"; gene_id "Ledus.S2G130700"
Ledus.S2	AUGUSTUS	exon	9989880	9990137	.	+	.	transcript_id "Ledus.S2G130700.t1"; gene_id "Ledus.S2G130700"
Ledus.S2	AUGUSTUS	stop_codon	9990138	9990140	.	+	0	transcript_id "Ledus.S2G130700.t1"; gene_id "Ledus.S2G130700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11665.t1 is derived from g5284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5814099	5816883	.	+	.	Ledus.S4G082100
Ledus.S4	AUGUSTUS	transcript	5814099	5816883	.	+	.	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	start_codon	5814099	5814101	.	+	0	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	CDS	5814099	5815607	0.81	+	0	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	exon	5814099	5815607	.	+	.	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	intron	5815608	5815688	.	+	.	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	CDS	5815689	5815745	1	+	0	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	exon	5815689	5815745	.	+	.	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	intron	5815746	5815841	.	+	.	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	CDS	5815842	5816040	1	+	0	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	exon	5815842	5816040	.	+	.	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	intron	5816041	5816128	.	+	.	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	CDS	5816129	5816247	1	+	2	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	exon	5816129	5816247	.	+	.	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	intron	5816248	5816347	.	+	.	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	CDS	5816348	5816524	1	+	0	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	exon	5816348	5816524	.	+	.	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	intron	5816525	5816607	.	+	.	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	CDS	5816608	5816883	1	+	0	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	exon	5816608	5816883	.	+	.	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
Ledus.S4	AUGUSTUS	stop_codon	5816884	5816886	.	+	0	transcript_id "Ledus.S4G082100.t1"; gene_id "Ledus.S4G082100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8659.t1 is derived from g9689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1182999	1185450	.	-	.	Ledus.S3G013600
Ledus.S3	AUGUSTUS	transcript	1182999	1185450	.	-	.	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	stop_codon	1182996	1182998	.	-	0	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	CDS	1182999	1183241	0.91	-	0	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	exon	1182999	1183241	.	-	.	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	intron	1183242	1183330	.	-	.	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	CDS	1183331	1184032	1	-	0	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	exon	1183331	1184032	.	-	.	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	intron	1184033	1184438	.	-	.	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	CDS	1184439	1184582	1	-	0	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	exon	1184439	1184582	.	-	.	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	intron	1184583	1184763	.	-	.	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	CDS	1184764	1185015	1	-	0	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	exon	1184764	1185015	.	-	.	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	intron	1185016	1185231	.	-	.	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	CDS	1185232	1185450	0.41	-	0	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	exon	1185232	1185450	.	-	.	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
Ledus.S3	AUGUSTUS	start_codon	1185448	1185450	.	-	0	transcript_id "Ledus.S3G013600.t1"; gene_id "Ledus.S3G013600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3720.t1 is derived from g1156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11151220	11154389	.	+	.	Ledus.S1G114100
Ledus.S1	AUGUSTUS	transcript	11151220	11154389	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	start_codon	11151220	11151222	.	+	0	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	CDS	11151220	11151300	0.55	+	0	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	exon	11151220	11151300	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	intron	11151301	11151375	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	CDS	11151376	11151538	0.4	+	0	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	exon	11151376	11151538	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	intron	11151539	11151937	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	CDS	11151938	11152252	0.15	+	2	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	exon	11151938	11152252	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	intron	11152253	11152630	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	CDS	11152631	11152671	0.56	+	2	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	exon	11152631	11152671	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	intron	11152672	11152819	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	CDS	11152820	11153244	0.6	+	0	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	exon	11152820	11153244	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	intron	11153245	11153330	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	CDS	11153331	11153857	0.77	+	1	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	exon	11153331	11153857	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	intron	11153858	11154177	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	CDS	11154178	11154389	0.82	+	2	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	exon	11154178	11154389	.	+	.	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
Ledus.S1	AUGUSTUS	stop_codon	11154390	11154392	.	+	0	transcript_id "Ledus.S1G114100.t1"; gene_id "Ledus.S1G114100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12000.t1 is derived from g5619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8401548	8402912	.	-	.	Ledus.S4G115600
Ledus.S4	AUGUSTUS	transcript	8401548	8402912	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	stop_codon	8401545	8401547	.	-	0	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	CDS	8401548	8401604	1	-	0	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	exon	8401548	8401604	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	intron	8401605	8401840	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	CDS	8401841	8401912	1	-	0	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	exon	8401841	8401912	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	intron	8401913	8402024	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	CDS	8402025	8402100	0.99	-	1	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	exon	8402025	8402100	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	intron	8402101	8402207	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	CDS	8402208	8402250	1	-	2	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	exon	8402208	8402250	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	intron	8402251	8402333	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	CDS	8402334	8402535	1	-	0	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	exon	8402334	8402535	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	intron	8402536	8402625	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	CDS	8402626	8402718	0.98	-	0	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	exon	8402626	8402718	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	intron	8402719	8402825	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	CDS	8402826	8402912	0.89	-	0	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	exon	8402826	8402912	.	-	.	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
Ledus.S4	AUGUSTUS	start_codon	8402910	8402912	.	-	0	transcript_id "Ledus.S4G115600.t1"; gene_id "Ledus.S4G115600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8127.t1 is derived from g12798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9242471	9243941	.	-	.	Ledus.S5G090500
Ledus.S5	AUGUSTUS	transcript	9242471	9243941	.	-	.	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	stop_codon	9242468	9242470	.	-	0	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	CDS	9242471	9242614	0.79	-	0	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	exon	9242471	9242614	.	-	.	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	intron	9242615	9242769	.	-	.	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	CDS	9242770	9242832	1	-	0	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	exon	9242770	9242832	.	-	.	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	intron	9242833	9243097	.	-	.	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	CDS	9243098	9243218	1	-	1	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	exon	9243098	9243218	.	-	.	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	intron	9243219	9243429	.	-	.	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	CDS	9243430	9243571	1	-	2	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	exon	9243430	9243571	.	-	.	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	intron	9243572	9243751	.	-	.	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	CDS	9243752	9243941	0.98	-	0	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	exon	9243752	9243941	.	-	.	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
Ledus.S5	AUGUSTUS	start_codon	9243939	9243941	.	-	0	transcript_id "Ledus.S5G090500.t1"; gene_id "Ledus.S5G090500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3492.t1 is derived from g927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8746733	8748695	.	-	.	Ledus.S1G091300
Ledus.S1	AUGUSTUS	transcript	8746733	8748695	.	-	.	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	stop_codon	8746730	8746732	.	-	0	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	CDS	8746733	8747097	1	-	2	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	exon	8746733	8747097	.	-	.	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	intron	8747098	8747229	.	-	.	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	CDS	8747230	8748019	1	-	0	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	exon	8747230	8748019	.	-	.	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	intron	8748020	8748109	.	-	.	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	CDS	8748110	8748263	1	-	1	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	exon	8748110	8748263	.	-	.	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	intron	8748264	8748416	.	-	.	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	CDS	8748417	8748439	1	-	0	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	exon	8748417	8748439	.	-	.	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	intron	8748440	8748587	.	-	.	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	CDS	8748588	8748695	0.35	-	0	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	exon	8748588	8748695	.	-	.	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
Ledus.S1	AUGUSTUS	start_codon	8748693	8748695	.	-	0	transcript_id "Ledus.S1G091300.t1"; gene_id "Ledus.S1G091300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10037.t1 is derived from g11067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12112791	12121258	.	+	.	Ledus.S3G151400
Ledus.S3	AUGUSTUS	transcript	12112791	12121258	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	start_codon	12112791	12112793	.	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12112791	12112937	0.79	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12112791	12112937	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12112938	12113105	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12113106	12113213	1	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12113106	12113213	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12113214	12113341	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12113342	12113490	1	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12113342	12113490	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12113491	12113576	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12113577	12113658	1	+	1	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12113577	12113658	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12113659	12113832	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12113833	12114263	0.99	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12113833	12114263	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12114264	12114564	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12114565	12115006	0.79	+	1	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12114565	12115006	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12115007	12115095	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12115096	12115319	1	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12115096	12115319	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12115320	12115504	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12115505	12115700	1	+	1	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12115505	12115700	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12115701	12115959	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12115960	12116117	1	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12115960	12116117	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12116118	12116218	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12116219	12116393	1	+	1	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12116219	12116393	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12116394	12116488	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12116489	12116542	0.76	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12116489	12116542	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12116543	12116661	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12116662	12116841	0.9	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12116662	12116841	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12116842	12116946	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12116947	12117059	0.98	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12116947	12117059	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12117060	12117183	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12117184	12117369	1	+	1	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12117184	12117369	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12117370	12117547	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12117548	12117605	1	+	1	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12117548	12117605	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12117606	12117736	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12117737	12117796	1	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12117737	12117796	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12117797	12117910	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12117911	12117952	1	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12117911	12117952	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12117953	12118050	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12118051	12118163	1	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12118051	12118163	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12118164	12118482	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12118483	12118618	1	+	1	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12118483	12118618	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12118619	12118702	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12118703	12118780	1	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12118703	12118780	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12118781	12118973	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12118974	12119161	0.25	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12118974	12119161	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12119162	12119383	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12119384	12119448	0.5	+	1	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12119384	12119448	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12119449	12119962	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12119963	12120001	0.95	+	2	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12119963	12120001	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12120002	12120247	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12120248	12120487	1	+	2	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12120248	12120487	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12120488	12120587	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12120588	12120787	0.63	+	2	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12120588	12120787	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12120788	12120895	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12120896	12121070	0.72	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12120896	12121070	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12121071	12121169	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12121170	12121258	1	+	2	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12121170	12121258	.	+	.	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	stop_codon	12121259	12121261	.	+	0	transcript_id "Ledus.S3G151400.t1"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	transcript	12112791	12121258	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	start_codon	12112791	12112793	.	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12112791	12112937	0.74	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12112791	12112937	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12112938	12113105	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12113106	12113213	1	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12113106	12113213	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12113214	12113341	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12113342	12113490	1	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12113342	12113490	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12113491	12113576	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12113577	12113658	1	+	1	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12113577	12113658	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12113659	12113832	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12113833	12114263	0.98	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12113833	12114263	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12114264	12114564	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12114565	12115006	0.77	+	1	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12114565	12115006	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12115007	12115095	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12115096	12115319	1	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12115096	12115319	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12115320	12115504	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12115505	12115700	1	+	1	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12115505	12115700	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12115701	12115959	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12115960	12116117	1	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12115960	12116117	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12116118	12116218	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12116219	12116393	1	+	1	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12116219	12116393	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12116394	12116488	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12116489	12116542	0.73	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12116489	12116542	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12116543	12116661	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12116662	12116841	0.93	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12116662	12116841	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12116842	12116946	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12116947	12117059	0.92	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12116947	12117059	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12117060	12117183	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12117184	12117229	0.7	+	1	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12117184	12117229	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12117230	12117350	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12117351	12117373	0.8	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12117351	12117373	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12117374	12117547	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12117548	12117605	1	+	1	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12117548	12117605	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12117606	12117736	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12117737	12117796	1	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12117737	12117796	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12117797	12117910	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12117911	12117952	1	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12117911	12117952	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12117953	12118050	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12118051	12118163	1	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12118051	12118163	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12118164	12118482	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12118483	12118618	1	+	1	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12118483	12118618	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12118619	12118702	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12118703	12118780	1	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12118703	12118780	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12118781	12118973	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12118974	12119161	0.24	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12118974	12119161	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12119162	12119383	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12119384	12119448	0.48	+	1	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12119384	12119448	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12119449	12119962	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12119963	12120001	0.97	+	2	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12119963	12120001	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12120002	12120247	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12120248	12120487	1	+	2	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12120248	12120487	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12120488	12120587	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12120588	12120787	0.66	+	2	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12120588	12120787	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12120788	12120895	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12120896	12121070	0.83	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12120896	12121070	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	intron	12121071	12121169	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	CDS	12121170	12121258	1	+	2	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	exon	12121170	12121258	.	+	.	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
Ledus.S3	AUGUSTUS	stop_codon	12121259	12121261	.	+	0	transcript_id "Ledus.S3G151400.t2"; gene_id "Ledus.S3G151400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11436.t1 is derived from g5054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4284775	4287750	.	+	.	Ledus.S4G059200
Ledus.S4	AUGUSTUS	transcript	4284775	4287750	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	start_codon	4284775	4284777	.	+	0	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	CDS	4284775	4284889	0.24	+	0	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	exon	4284775	4284889	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	intron	4284890	4285018	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	CDS	4285019	4285088	0.77	+	2	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	exon	4285019	4285088	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	intron	4285089	4285235	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	CDS	4285236	4285294	1	+	1	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	exon	4285236	4285294	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	intron	4285295	4285500	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	CDS	4285501	4285582	1	+	2	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	exon	4285501	4285582	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	intron	4285583	4285828	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	CDS	4285829	4285949	1	+	1	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	exon	4285829	4285949	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	intron	4285950	4286070	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	CDS	4286071	4286112	1	+	0	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	exon	4286071	4286112	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	intron	4286113	4286275	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	CDS	4286276	4286929	1	+	0	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	exon	4286276	4286929	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	intron	4286930	4287047	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	CDS	4287048	4287167	1	+	0	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	exon	4287048	4287167	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	intron	4287168	4287387	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	CDS	4287388	4287615	1	+	0	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	exon	4287388	4287615	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	intron	4287616	4287714	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	CDS	4287715	4287750	1	+	0	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	exon	4287715	4287750	.	+	.	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
Ledus.S4	AUGUSTUS	stop_codon	4287751	4287753	.	+	0	transcript_id "Ledus.S4G059200.t1"; gene_id "Ledus.S4G059200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg184.t1 is derived from g7045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	610129	611496	.	-	.	Ledus.S2G006600
Ledus.S2	AUGUSTUS	transcript	610129	611496	.	-	.	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	stop_codon	610126	610128	.	-	0	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	CDS	610129	610178	0.8	-	2	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	exon	610129	610178	.	-	.	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	intron	610179	610262	.	-	.	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	CDS	610263	610276	0.76	-	1	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	exon	610263	610276	.	-	.	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	intron	610277	610385	.	-	.	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	CDS	610386	610461	0.91	-	2	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	exon	610386	610461	.	-	.	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	intron	610462	610610	.	-	.	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	CDS	610611	611496	0.97	-	0	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	exon	610611	611496	.	-	.	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
Ledus.S2	AUGUSTUS	start_codon	611494	611496	.	-	0	transcript_id "Ledus.S2G006600.t1"; gene_id "Ledus.S2G006600"
# This transcript jg11651.t2 is derived from g5270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11652.t1 is derived from g5271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5740006	5741245	.	-	.	Ledus.S4G080800
Ledus.S4	AUGUSTUS	transcript	5740006	5741245	.	-	.	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	stop_codon	5740003	5740005	.	-	0	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	CDS	5740006	5740134	0.74	-	0	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	exon	5740006	5740134	.	-	.	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	intron	5740135	5740240	.	-	.	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	CDS	5740241	5740391	0.75	-	1	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	exon	5740241	5740391	.	-	.	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	intron	5740392	5740578	.	-	.	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	CDS	5740579	5740775	0.62	-	0	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	exon	5740579	5740775	.	-	.	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	intron	5740776	5740887	.	-	.	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	CDS	5740888	5740970	0.59	-	2	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	exon	5740888	5740970	.	-	.	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	intron	5740971	5741046	.	-	.	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	CDS	5741047	5741245	0.5	-	0	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	exon	5741047	5741245	.	-	.	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
Ledus.S4	AUGUSTUS	start_codon	5741243	5741245	.	-	0	transcript_id "Ledus.S4G080800.t1"; gene_id "Ledus.S4G080800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg716.t1 is derived from g7577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4430454	4433087	.	-	.	Ledus.S2G059800
Ledus.S2	AUGUSTUS	transcript	4430454	4433087	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	stop_codon	4430451	4430453	.	-	0	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	CDS	4430454	4430564	0.7	-	0	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	exon	4430454	4430564	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	intron	4430565	4430665	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	CDS	4430666	4430725	0.97	-	0	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	exon	4430666	4430725	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	intron	4430726	4430834	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	CDS	4430835	4430901	0.99	-	1	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	exon	4430835	4430901	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	intron	4430902	4430997	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	CDS	4430998	4431050	1	-	0	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	exon	4430998	4431050	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	intron	4431051	4431165	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	CDS	4431166	4431336	1	-	0	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	exon	4431166	4431336	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	intron	4431337	4431462	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	CDS	4431463	4431548	1	-	2	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	exon	4431463	4431548	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	intron	4431549	4431766	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	CDS	4431767	4432055	0.99	-	0	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	exon	4431767	4432055	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	intron	4432056	4432163	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	CDS	4432164	4433087	0.99	-	0	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	exon	4432164	4433087	.	-	.	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
Ledus.S2	AUGUSTUS	start_codon	4433085	4433087	.	-	0	transcript_id "Ledus.S2G059800.t1"; gene_id "Ledus.S2G059800"
# This transcript jg4478.t2 is derived from g1914.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4479.t1 is derived from g1915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17264671	17265970	.	-	.	Ledus.S1G190000
Ledus.S1	AUGUSTUS	transcript	17264671	17265970	.	-	.	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	stop_codon	17264668	17264670	.	-	0	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	CDS	17264671	17265018	0.91	-	0	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	exon	17264671	17265018	.	-	.	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	intron	17265019	17265132	.	-	.	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	CDS	17265133	17265407	1	-	2	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	exon	17265133	17265407	.	-	.	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	intron	17265408	17265619	.	-	.	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	CDS	17265620	17265700	1	-	2	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	exon	17265620	17265700	.	-	.	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	intron	17265701	17265792	.	-	.	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	CDS	17265793	17265970	1	-	0	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	exon	17265793	17265970	.	-	.	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
Ledus.S1	AUGUSTUS	start_codon	17265968	17265970	.	-	0	transcript_id "Ledus.S1G190000.t1"; gene_id "Ledus.S1G190000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5910.t1 is derived from g3353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27740203	27742033	.	-	.	Ledus.S1G333100
Ledus.S1	AUGUSTUS	transcript	27740203	27742033	.	-	.	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	stop_codon	27740200	27740202	.	-	0	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	CDS	27740203	27740319	0.51	-	0	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	exon	27740203	27740319	.	-	.	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	intron	27740320	27740543	.	-	.	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	CDS	27740544	27740766	0.83	-	1	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	exon	27740544	27740766	.	-	.	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	intron	27740767	27740858	.	-	.	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	CDS	27740859	27741064	1	-	0	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	exon	27740859	27741064	.	-	.	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	intron	27741065	27741158	.	-	.	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	CDS	27741159	27741432	1	-	1	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	exon	27741159	27741432	.	-	.	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	intron	27741433	27741599	.	-	.	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	CDS	27741600	27742033	0.55	-	0	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	exon	27741600	27742033	.	-	.	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
Ledus.S1	AUGUSTUS	start_codon	27742031	27742033	.	-	0	transcript_id "Ledus.S1G333100.t1"; gene_id "Ledus.S1G333100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11971.t1 is derived from g5590.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8161559	8164225	.	-	.	Ledus.S4G112700
Ledus.S4	AUGUSTUS	transcript	8161559	8164225	.	-	.	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	stop_codon	8161556	8161558	.	-	0	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	CDS	8161559	8161804	0.89	-	0	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	exon	8161559	8161804	.	-	.	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	intron	8161805	8161928	.	-	.	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	CDS	8161929	8162195	1	-	0	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	exon	8161929	8162195	.	-	.	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	intron	8162196	8162374	.	-	.	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	CDS	8162375	8162815	1	-	0	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	exon	8162375	8162815	.	-	.	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	intron	8162816	8162937	.	-	.	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	CDS	8162938	8163024	1	-	0	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	exon	8162938	8163024	.	-	.	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	intron	8163025	8163181	.	-	.	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	CDS	8163182	8163900	1	-	2	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	exon	8163182	8163900	.	-	.	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	intron	8163901	8164173	.	-	.	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	CDS	8164174	8164225	1	-	0	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	exon	8164174	8164225	.	-	.	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
Ledus.S4	AUGUSTUS	start_codon	8164223	8164225	.	-	0	transcript_id "Ledus.S4G112700.t1"; gene_id "Ledus.S4G112700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9145.t1 is derived from g10175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4872251	4872487	.	-	.	Ledus.S3G062200
Ledus.S3	AUGUSTUS	transcript	4872251	4872487	.	-	.	transcript_id "Ledus.S3G062200.t1"; gene_id "Ledus.S3G062200"
Ledus.S3	AUGUSTUS	stop_codon	4872248	4872250	.	-	0	transcript_id "Ledus.S3G062200.t1"; gene_id "Ledus.S3G062200"
Ledus.S3	AUGUSTUS	CDS	4872251	4872487	0.49	-	0	transcript_id "Ledus.S3G062200.t1"; gene_id "Ledus.S3G062200"
Ledus.S3	AUGUSTUS	exon	4872251	4872487	.	-	.	transcript_id "Ledus.S3G062200.t1"; gene_id "Ledus.S3G062200"
Ledus.S3	AUGUSTUS	start_codon	4872485	4872487	.	-	0	transcript_id "Ledus.S3G062200.t1"; gene_id "Ledus.S3G062200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4534.t1 is derived from g1971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17571960	17576547	.	-	.	Ledus.S1G195500
Ledus.S1	AUGUSTUS	transcript	17571960	17576547	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	stop_codon	17571957	17571959	.	-	0	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17571960	17571986	0.97	-	0	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17571960	17571986	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17571987	17572263	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17572264	17572366	0.84	-	1	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17572264	17572366	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17572367	17572470	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17572471	17572522	0.96	-	2	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17572471	17572522	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17572523	17572686	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17572687	17573866	0.98	-	0	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17572687	17573866	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17573867	17573986	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17573987	17574076	1	-	0	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17573987	17574076	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17574077	17574172	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17574173	17574248	1	-	1	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17574173	17574248	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17574249	17574334	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17574335	17574552	1	-	0	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17574335	17574552	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17574553	17574671	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17574672	17574887	1	-	0	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17574672	17574887	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17574888	17574980	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17574981	17575166	0.99	-	0	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17574981	17575166	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17575167	17575265	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17575266	17575388	1	-	0	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17575266	17575388	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17575389	17575489	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17575490	17575605	0.97	-	2	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17575490	17575605	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17575606	17575694	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17575695	17576098	0.8	-	1	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17575695	17576098	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17576099	17576174	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17576175	17576300	0.78	-	1	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17576175	17576300	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	intron	17576301	17576479	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	CDS	17576480	17576547	0.84	-	0	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	exon	17576480	17576547	.	-	.	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
Ledus.S1	AUGUSTUS	start_codon	17576545	17576547	.	-	0	transcript_id "Ledus.S1G195500.t1"; gene_id "Ledus.S1G195500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6293.t1 is derived from g3736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30159003	30160443	.	+	.	Ledus.S1G371400
Ledus.S1	AUGUSTUS	transcript	30159003	30160443	.	+	.	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	start_codon	30159003	30159005	.	+	0	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	CDS	30159003	30159112	0.99	+	0	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	exon	30159003	30159112	.	+	.	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	intron	30159113	30159384	.	+	.	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	CDS	30159385	30159496	0.98	+	1	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	exon	30159385	30159496	.	+	.	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	intron	30159497	30159599	.	+	.	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	CDS	30159600	30159671	0.97	+	0	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	exon	30159600	30159671	.	+	.	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	intron	30159672	30159846	.	+	.	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	CDS	30159847	30160037	1	+	0	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	exon	30159847	30160037	.	+	.	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	intron	30160038	30160128	.	+	.	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	CDS	30160129	30160191	0.81	+	1	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	exon	30160129	30160191	.	+	.	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	intron	30160192	30160406	.	+	.	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	CDS	30160407	30160443	0.8	+	1	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	exon	30160407	30160443	.	+	.	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
Ledus.S1	AUGUSTUS	stop_codon	30160444	30160446	.	+	0	transcript_id "Ledus.S1G371400.t1"; gene_id "Ledus.S1G371400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5472.t1 is derived from g2911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24467942	24469722	.	+	.	Ledus.S1G289300
Ledus.S1	AUGUSTUS	transcript	24467942	24469722	.	+	.	transcript_id "Ledus.S1G289300.t1"; gene_id "Ledus.S1G289300"
Ledus.S1	AUGUSTUS	start_codon	24467942	24467944	.	+	0	transcript_id "Ledus.S1G289300.t1"; gene_id "Ledus.S1G289300"
Ledus.S1	AUGUSTUS	CDS	24467942	24468067	0.79	+	0	transcript_id "Ledus.S1G289300.t1"; gene_id "Ledus.S1G289300"
Ledus.S1	AUGUSTUS	exon	24467942	24468067	.	+	.	transcript_id "Ledus.S1G289300.t1"; gene_id "Ledus.S1G289300"
Ledus.S1	AUGUSTUS	intron	24468068	24468135	.	+	.	transcript_id "Ledus.S1G289300.t1"; gene_id "Ledus.S1G289300"
Ledus.S1	AUGUSTUS	CDS	24468136	24469722	0.97	+	0	transcript_id "Ledus.S1G289300.t1"; gene_id "Ledus.S1G289300"
Ledus.S1	AUGUSTUS	exon	24468136	24469722	.	+	.	transcript_id "Ledus.S1G289300.t1"; gene_id "Ledus.S1G289300"
Ledus.S1	AUGUSTUS	stop_codon	24469723	24469725	.	+	0	transcript_id "Ledus.S1G289300.t1"; gene_id "Ledus.S1G289300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1175.t1 is derived from g8036.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8212182	8212463	.	+	.	Ledus.S2G105700
Ledus.S2	AUGUSTUS	transcript	8212182	8212463	.	+	.	transcript_id "Ledus.S2G105700.t1"; gene_id "Ledus.S2G105700"
Ledus.S2	AUGUSTUS	start_codon	8212182	8212184	.	+	0	transcript_id "Ledus.S2G105700.t1"; gene_id "Ledus.S2G105700"
Ledus.S2	AUGUSTUS	CDS	8212182	8212463	0.97	+	0	transcript_id "Ledus.S2G105700.t1"; gene_id "Ledus.S2G105700"
Ledus.S2	AUGUSTUS	exon	8212182	8212463	.	+	.	transcript_id "Ledus.S2G105700.t1"; gene_id "Ledus.S2G105700"
Ledus.S2	AUGUSTUS	stop_codon	8212464	8212466	.	+	0	transcript_id "Ledus.S2G105700.t1"; gene_id "Ledus.S2G105700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7207.t1 is derived from g6738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2147052	2155373	.	+	.	Ledus.C7G026800
Ledus.C7	AUGUSTUS	transcript	2147052	2155373	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	start_codon	2147052	2147054	.	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2147052	2147224	0.74	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2147052	2147224	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2147225	2147320	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2147321	2147382	0.75	+	1	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2147321	2147382	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2147383	2147676	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2147677	2147840	0.75	+	2	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2147677	2147840	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2147841	2148123	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2148124	2148221	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2148124	2148221	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2148222	2148471	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2148472	2148599	1	+	1	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2148472	2148599	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2148600	2148729	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2148730	2148841	0.99	+	2	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2148730	2148841	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2148842	2148964	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2148965	2149151	0.97	+	1	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2148965	2149151	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2149152	2149241	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2149242	2149421	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2149242	2149421	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2149422	2149690	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2149691	2149813	0.86	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2149691	2149813	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2149814	2150000	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2150001	2150088	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2150001	2150088	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2150089	2150312	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2150313	2150428	1	+	2	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2150313	2150428	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2150429	2150644	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2150645	2150973	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2150645	2150973	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2150974	2151145	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2151146	2151242	1	+	1	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2151146	2151242	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2151243	2151399	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2151400	2151561	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2151400	2151561	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2151562	2151643	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2151644	2151730	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2151644	2151730	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2151731	2151888	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2151889	2151975	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2151889	2151975	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2151976	2152058	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2152059	2152199	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2152059	2152199	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2152200	2152346	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2152347	2152472	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2152347	2152472	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2152473	2152605	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2152606	2152704	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2152606	2152704	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2152705	2152880	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2152881	2152948	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2152881	2152948	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2152949	2153477	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2153478	2153544	1	+	1	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2153478	2153544	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2153545	2153685	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2153686	2153856	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2153686	2153856	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2153857	2154041	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2154042	2154131	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2154042	2154131	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2154132	2154315	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2154316	2154396	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2154316	2154396	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2154397	2154527	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2154528	2154601	1	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2154528	2154601	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2154602	2154730	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2154731	2154802	1	+	1	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2154731	2154802	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2154803	2155021	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2155022	2155114	1	+	1	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2155022	2155114	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	intron	2155115	2155309	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	CDS	2155310	2155373	0.57	+	1	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	exon	2155310	2155373	.	+	.	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
Ledus.C7	AUGUSTUS	stop_codon	2155374	2155376	.	+	0	transcript_id "Ledus.C7G026800.t1"; gene_id "Ledus.C7G026800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13098.t1 is derived from g6908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5528754	5529053	.	+	.	Ledus.S6G016000
Ledus.S6	AUGUSTUS	transcript	5528754	5529053	.	+	.	transcript_id "Ledus.S6G016000.t1"; gene_id "Ledus.S6G016000"
Ledus.S6	AUGUSTUS	start_codon	5528754	5528756	.	+	0	transcript_id "Ledus.S6G016000.t1"; gene_id "Ledus.S6G016000"
Ledus.S6	AUGUSTUS	CDS	5528754	5529053	0.92	+	0	transcript_id "Ledus.S6G016000.t1"; gene_id "Ledus.S6G016000"
Ledus.S6	AUGUSTUS	exon	5528754	5529053	.	+	.	transcript_id "Ledus.S6G016000.t1"; gene_id "Ledus.S6G016000"
Ledus.S6	AUGUSTUS	stop_codon	5529054	5529056	.	+	0	transcript_id "Ledus.S6G016000.t1"; gene_id "Ledus.S6G016000"
# This transcript jg9174.t2 is derived from g10204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9175.t1 is derived from g10205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5250700	5252757	.	+	.	Ledus.S3G065200
Ledus.S3	AUGUSTUS	transcript	5250700	5252757	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	start_codon	5250700	5250702	.	+	0	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	CDS	5250700	5251088	0.55	+	0	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	exon	5250700	5251088	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	intron	5251089	5251163	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	CDS	5251164	5251367	1	+	1	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	exon	5251164	5251367	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	intron	5251368	5251500	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	CDS	5251501	5251561	1	+	1	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	exon	5251501	5251561	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	intron	5251562	5251654	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	CDS	5251655	5251717	1	+	0	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	exon	5251655	5251717	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	intron	5251718	5251863	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	CDS	5251864	5251939	1	+	0	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	exon	5251864	5251939	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	intron	5251940	5252025	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	CDS	5252026	5252135	1	+	2	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	exon	5252026	5252135	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	intron	5252136	5252245	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	CDS	5252246	5252335	1	+	0	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	exon	5252246	5252335	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	intron	5252336	5252412	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	CDS	5252413	5252544	1	+	0	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	exon	5252413	5252544	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	intron	5252545	5252631	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	CDS	5252632	5252757	1	+	0	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	exon	5252632	5252757	.	+	.	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
Ledus.S3	AUGUSTUS	stop_codon	5252758	5252760	.	+	0	transcript_id "Ledus.S3G065200.t1"; gene_id "Ledus.S3G065200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4489.t1 is derived from g1925.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17314169	17315330	.	+	.	Ledus.S1G191000
Ledus.S1	AUGUSTUS	transcript	17314169	17315330	.	+	.	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	start_codon	17314169	17314171	.	+	0	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	CDS	17314169	17314523	0.96	+	0	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	exon	17314169	17314523	.	+	.	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	intron	17314524	17314594	.	+	.	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	CDS	17314595	17314638	0.99	+	2	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	exon	17314595	17314638	.	+	.	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	intron	17314639	17314736	.	+	.	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	CDS	17314737	17314848	0.99	+	0	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	exon	17314737	17314848	.	+	.	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	intron	17314849	17314935	.	+	.	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	CDS	17314936	17315330	0.95	+	2	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	exon	17314936	17315330	.	+	.	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
Ledus.S1	AUGUSTUS	stop_codon	17315331	17315333	.	+	0	transcript_id "Ledus.S1G191000.t1"; gene_id "Ledus.S1G191000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5749.t1 is derived from g3189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26467124	26474575	.	-	.	Ledus.S1G317000
Ledus.S1	AUGUSTUS	transcript	26467124	26474575	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	stop_codon	26467121	26467123	.	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26467124	26467306	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26467124	26467306	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26467307	26467428	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26467429	26467527	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26467429	26467527	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26467528	26467625	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26467626	26467716	1	-	1	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26467626	26467716	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26467717	26467901	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26467902	26467958	1	-	1	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26467902	26467958	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26467959	26468092	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26468093	26468268	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26468093	26468268	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26468269	26468407	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26468408	26468476	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26468408	26468476	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26468477	26468595	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26468596	26468674	1	-	1	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26468596	26468674	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26468675	26468843	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26468844	26468920	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26468844	26468920	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26468921	26469080	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26469081	26469194	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26469081	26469194	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26469195	26469325	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26469326	26469416	1	-	1	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26469326	26469416	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26469417	26469564	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26469565	26469653	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26469565	26469653	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26469654	26469742	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26469743	26469844	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26469743	26469844	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26469845	26469931	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26469932	26470014	1	-	2	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26469932	26470014	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26470015	26470323	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26470324	26470492	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26470324	26470492	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26470493	26470575	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26470576	26470698	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26470576	26470698	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26470699	26470841	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26470842	26470997	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26470842	26470997	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26470998	26471081	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26471082	26471234	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26471082	26471234	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26471235	26471410	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26471411	26471559	0.49	-	2	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26471411	26471559	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26471560	26471663	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26471664	26471745	0.52	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26471664	26471745	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26471746	26471973	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26471974	26472030	0.97	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26471974	26472030	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26472031	26472096	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26472097	26472420	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26472097	26472420	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26472421	26472511	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26472512	26472551	1	-	1	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26472512	26472551	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26472552	26472651	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26472652	26472700	1	-	2	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26472652	26472700	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26472701	26472796	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26472797	26472872	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26472797	26472872	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26472873	26472969	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26472970	26473062	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26472970	26473062	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26473063	26473158	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26473159	26473239	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26473159	26473239	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26473240	26473331	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26473332	26473394	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26473332	26473394	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26473395	26473486	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26473487	26473550	1	-	1	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26473487	26473550	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26473551	26473647	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26473648	26473765	0.96	-	2	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26473648	26473765	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26473766	26473875	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26473876	26473898	0.97	-	1	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26473876	26473898	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26473899	26473990	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26473991	26474049	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26473991	26474049	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26474050	26474144	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26474145	26474228	1	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26474145	26474228	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26474229	26474322	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26474323	26474401	1	-	1	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26474323	26474401	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	intron	26474402	26474486	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	CDS	26474487	26474575	0.58	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	exon	26474487	26474575	.	-	.	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
Ledus.S1	AUGUSTUS	start_codon	26474573	26474575	.	-	0	transcript_id "Ledus.S1G317000.t1"; gene_id "Ledus.S1G317000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2769.t1 is derived from g203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3411956	3415207	.	-	.	Ledus.S1G019000
Ledus.S1	AUGUSTUS	transcript	3411956	3415207	.	-	.	transcript_id "Ledus.S1G019000.t1"; gene_id "Ledus.S1G019000"
Ledus.S1	AUGUSTUS	stop_codon	3411953	3411955	.	-	0	transcript_id "Ledus.S1G019000.t1"; gene_id "Ledus.S1G019000"
Ledus.S1	AUGUSTUS	CDS	3411956	3415207	0.95	-	0	transcript_id "Ledus.S1G019000.t1"; gene_id "Ledus.S1G019000"
Ledus.S1	AUGUSTUS	exon	3411956	3415207	.	-	.	transcript_id "Ledus.S1G019000.t1"; gene_id "Ledus.S1G019000"
Ledus.S1	AUGUSTUS	start_codon	3415205	3415207	.	-	0	transcript_id "Ledus.S1G019000.t1"; gene_id "Ledus.S1G019000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8585.t1 is derived from g9615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	390280	390960	.	-	.	Ledus.S3G006200
Ledus.S3	AUGUSTUS	transcript	390280	390960	.	-	.	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	stop_codon	390277	390279	.	-	0	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	CDS	390280	390379	0.8	-	1	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	exon	390280	390379	.	-	.	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	intron	390380	390472	.	-	.	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	CDS	390473	390518	1	-	2	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	exon	390473	390518	.	-	.	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	intron	390519	390604	.	-	.	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	CDS	390605	390757	0.48	-	2	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	exon	390605	390757	.	-	.	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	intron	390758	390926	.	-	.	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	CDS	390927	390960	0.69	-	0	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	exon	390927	390960	.	-	.	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
Ledus.S3	AUGUSTUS	start_codon	390958	390960	.	-	0	transcript_id "Ledus.S3G006200.t1"; gene_id "Ledus.S3G006200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8466.t1 is derived from g13138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11926637	11927570	.	-	.	Ledus.S5G124400
Ledus.S5	AUGUSTUS	transcript	11926637	11927570	.	-	.	transcript_id "Ledus.S5G124400.t1"; gene_id "Ledus.S5G124400"
Ledus.S5	AUGUSTUS	stop_codon	11926634	11926636	.	-	0	transcript_id "Ledus.S5G124400.t1"; gene_id "Ledus.S5G124400"
Ledus.S5	AUGUSTUS	CDS	11926637	11926888	0.5	-	0	transcript_id "Ledus.S5G124400.t1"; gene_id "Ledus.S5G124400"
Ledus.S5	AUGUSTUS	exon	11926637	11926888	.	-	.	transcript_id "Ledus.S5G124400.t1"; gene_id "Ledus.S5G124400"
Ledus.S5	AUGUSTUS	intron	11926889	11926995	.	-	.	transcript_id "Ledus.S5G124400.t1"; gene_id "Ledus.S5G124400"
Ledus.S5	AUGUSTUS	CDS	11926996	11927265	0.48	-	0	transcript_id "Ledus.S5G124400.t1"; gene_id "Ledus.S5G124400"
Ledus.S5	AUGUSTUS	exon	11926996	11927265	.	-	.	transcript_id "Ledus.S5G124400.t1"; gene_id "Ledus.S5G124400"
Ledus.S5	AUGUSTUS	intron	11927266	11927438	.	-	.	transcript_id "Ledus.S5G124400.t1"; gene_id "Ledus.S5G124400"
Ledus.S5	AUGUSTUS	CDS	11927439	11927570	0.71	-	0	transcript_id "Ledus.S5G124400.t1"; gene_id "Ledus.S5G124400"
Ledus.S5	AUGUSTUS	exon	11927439	11927570	.	-	.	transcript_id "Ledus.S5G124400.t1"; gene_id "Ledus.S5G124400"
Ledus.S5	AUGUSTUS	start_codon	11927568	11927570	.	-	0	transcript_id "Ledus.S5G124400.t1"; gene_id "Ledus.S5G124400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12099.t1 is derived from g5718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9498163	9499649	.	+	.	Ledus.S4G125500
Ledus.S4	AUGUSTUS	transcript	9498163	9499649	.	+	.	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	start_codon	9498163	9498165	.	+	0	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	CDS	9498163	9498191	0.47	+	0	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	exon	9498163	9498191	.	+	.	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	intron	9498192	9498314	.	+	.	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	CDS	9498315	9498323	0.79	+	1	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	exon	9498315	9498323	.	+	.	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	intron	9498324	9498401	.	+	.	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	CDS	9498402	9498407	0.56	+	1	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	exon	9498402	9498407	.	+	.	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	intron	9498408	9498502	.	+	.	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	CDS	9498503	9499649	0.98	+	1	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	exon	9498503	9499649	.	+	.	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
Ledus.S4	AUGUSTUS	stop_codon	9499650	9499652	.	+	0	transcript_id "Ledus.S4G125500.t1"; gene_id "Ledus.S4G125500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3583.t1 is derived from g1019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9806323	9809890	.	+	.	Ledus.S1G100400
Ledus.S1	AUGUSTUS	transcript	9806323	9809890	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	start_codon	9806323	9806325	.	+	0	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	CDS	9806323	9806497	0.83	+	0	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	exon	9806323	9806497	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	intron	9806498	9806610	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	CDS	9806611	9806747	0.92	+	2	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	exon	9806611	9806747	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	intron	9806748	9806838	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	CDS	9806839	9807200	1	+	0	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	exon	9806839	9807200	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	intron	9807201	9807287	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	CDS	9807288	9807384	1	+	1	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	exon	9807288	9807384	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	intron	9807385	9807472	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	CDS	9807473	9807760	1	+	0	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	exon	9807473	9807760	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	intron	9807761	9807851	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	CDS	9807852	9808776	0.57	+	0	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	exon	9807852	9808776	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	intron	9808777	9808949	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	CDS	9808950	9808986	0.5	+	2	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	exon	9808950	9808986	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	intron	9808987	9809086	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	CDS	9809087	9809178	0.47	+	1	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	exon	9809087	9809178	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	intron	9809179	9809345	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	CDS	9809346	9809404	0.35	+	2	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	exon	9809346	9809404	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	intron	9809405	9809522	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	CDS	9809523	9809719	0.67	+	0	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	exon	9809523	9809719	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	intron	9809720	9809814	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	CDS	9809815	9809890	0.99	+	1	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	exon	9809815	9809890	.	+	.	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
Ledus.S1	AUGUSTUS	stop_codon	9809891	9809893	.	+	0	transcript_id "Ledus.S1G100400.t1"; gene_id "Ledus.S1G100400"
# This transcript jg10477.t2 is derived from g11507.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10478.t1 is derived from g11508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15512295	15512618	.	+	.	Ledus.S3G195500
Ledus.S3	AUGUSTUS	transcript	15512295	15512618	.	+	.	transcript_id "Ledus.S3G195500.t1"; gene_id "Ledus.S3G195500"
Ledus.S3	AUGUSTUS	start_codon	15512295	15512297	.	+	0	transcript_id "Ledus.S3G195500.t1"; gene_id "Ledus.S3G195500"
Ledus.S3	AUGUSTUS	CDS	15512295	15512618	0.43	+	0	transcript_id "Ledus.S3G195500.t1"; gene_id "Ledus.S3G195500"
Ledus.S3	AUGUSTUS	exon	15512295	15512618	.	+	.	transcript_id "Ledus.S3G195500.t1"; gene_id "Ledus.S3G195500"
Ledus.S3	AUGUSTUS	stop_codon	15512619	15512621	.	+	0	transcript_id "Ledus.S3G195500.t1"; gene_id "Ledus.S3G195500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10618.t1 is derived from g11648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16468032	16468466	.	-	.	Ledus.S3G209500
Ledus.S3	AUGUSTUS	transcript	16468032	16468466	.	-	.	transcript_id "Ledus.S3G209500.t1"; gene_id "Ledus.S3G209500"
Ledus.S3	AUGUSTUS	stop_codon	16468029	16468031	.	-	0	transcript_id "Ledus.S3G209500.t1"; gene_id "Ledus.S3G209500"
Ledus.S3	AUGUSTUS	CDS	16468032	16468466	0.47	-	0	transcript_id "Ledus.S3G209500.t1"; gene_id "Ledus.S3G209500"
Ledus.S3	AUGUSTUS	exon	16468032	16468466	.	-	.	transcript_id "Ledus.S3G209500.t1"; gene_id "Ledus.S3G209500"
Ledus.S3	AUGUSTUS	start_codon	16468464	16468466	.	-	0	transcript_id "Ledus.S3G209500.t1"; gene_id "Ledus.S3G209500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13027.t1 is derived from g6837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3417948	3418415	.	+	.	Ledus.S6G008900
Ledus.S6	AUGUSTUS	transcript	3417948	3418415	.	+	.	transcript_id "Ledus.S6G008900.t1"; gene_id "Ledus.S6G008900"
Ledus.S6	AUGUSTUS	start_codon	3417948	3417950	.	+	0	transcript_id "Ledus.S6G008900.t1"; gene_id "Ledus.S6G008900"
Ledus.S6	AUGUSTUS	CDS	3417948	3418415	0.83	+	0	transcript_id "Ledus.S6G008900.t1"; gene_id "Ledus.S6G008900"
Ledus.S6	AUGUSTUS	exon	3417948	3418415	.	+	.	transcript_id "Ledus.S6G008900.t1"; gene_id "Ledus.S6G008900"
Ledus.S6	AUGUSTUS	stop_codon	3418416	3418418	.	+	0	transcript_id "Ledus.S6G008900.t1"; gene_id "Ledus.S6G008900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7178.t1 is derived from g6709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1987592	1989689	.	-	.	Ledus.C7G023900
Ledus.C7	AUGUSTUS	transcript	1987592	1989689	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	stop_codon	1987589	1987591	.	-	0	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	CDS	1987592	1987801	1	-	0	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	exon	1987592	1987801	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	intron	1987802	1987902	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	CDS	1987903	1988061	0.99	-	0	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	exon	1987903	1988061	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	intron	1988062	1988157	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	CDS	1988158	1988475	1	-	0	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	exon	1988158	1988475	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	intron	1988476	1988575	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	CDS	1988576	1988836	1	-	0	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	exon	1988576	1988836	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	intron	1988837	1988966	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	CDS	1988967	1989044	1	-	0	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	exon	1988967	1989044	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	intron	1989045	1989133	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	CDS	1989134	1989367	1	-	0	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	exon	1989134	1989367	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	intron	1989368	1989458	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	CDS	1989459	1989689	1	-	0	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	exon	1989459	1989689	.	-	.	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
Ledus.C7	AUGUSTUS	start_codon	1989687	1989689	.	-	0	transcript_id "Ledus.C7G023900.t1"; gene_id "Ledus.C7G023900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4357.t1 is derived from g1793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16561708	16562979	.	-	.	Ledus.S1G177800
Ledus.S1	AUGUSTUS	transcript	16561708	16562979	.	-	.	transcript_id "Ledus.S1G177800.t1"; gene_id "Ledus.S1G177800"
Ledus.S1	AUGUSTUS	stop_codon	16561705	16561707	.	-	0	transcript_id "Ledus.S1G177800.t1"; gene_id "Ledus.S1G177800"
Ledus.S1	AUGUSTUS	CDS	16561708	16562979	0.69	-	0	transcript_id "Ledus.S1G177800.t1"; gene_id "Ledus.S1G177800"
Ledus.S1	AUGUSTUS	exon	16561708	16562979	.	-	.	transcript_id "Ledus.S1G177800.t1"; gene_id "Ledus.S1G177800"
Ledus.S1	AUGUSTUS	start_codon	16562977	16562979	.	-	0	transcript_id "Ledus.S1G177800.t1"; gene_id "Ledus.S1G177800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9707.t1 is derived from g10737.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9230183	9233163	.	-	.	Ledus.S3G118400
Ledus.S3	AUGUSTUS	transcript	9230183	9233163	.	-	.	transcript_id "Ledus.S3G118400.t1"; gene_id "Ledus.S3G118400"
Ledus.S3	AUGUSTUS	stop_codon	9230180	9230182	.	-	0	transcript_id "Ledus.S3G118400.t1"; gene_id "Ledus.S3G118400"
Ledus.S3	AUGUSTUS	CDS	9230183	9230377	0.12	-	0	transcript_id "Ledus.S3G118400.t1"; gene_id "Ledus.S3G118400"
Ledus.S3	AUGUSTUS	exon	9230183	9230377	.	-	.	transcript_id "Ledus.S3G118400.t1"; gene_id "Ledus.S3G118400"
Ledus.S3	AUGUSTUS	intron	9230378	9231536	.	-	.	transcript_id "Ledus.S3G118400.t1"; gene_id "Ledus.S3G118400"
Ledus.S3	AUGUSTUS	CDS	9231537	9231665	0.03	-	0	transcript_id "Ledus.S3G118400.t1"; gene_id "Ledus.S3G118400"
Ledus.S3	AUGUSTUS	exon	9231537	9231665	.	-	.	transcript_id "Ledus.S3G118400.t1"; gene_id "Ledus.S3G118400"
Ledus.S3	AUGUSTUS	intron	9231666	9232266	.	-	.	transcript_id "Ledus.S3G118400.t1"; gene_id "Ledus.S3G118400"
Ledus.S3	AUGUSTUS	CDS	9232267	9233163	0.01	-	0	transcript_id "Ledus.S3G118400.t1"; gene_id "Ledus.S3G118400"
Ledus.S3	AUGUSTUS	exon	9232267	9233163	.	-	.	transcript_id "Ledus.S3G118400.t1"; gene_id "Ledus.S3G118400"
Ledus.S3	AUGUSTUS	start_codon	9233161	9233163	.	-	0	transcript_id "Ledus.S3G118400.t1"; gene_id "Ledus.S3G118400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10634.t1 is derived from g11664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16674804	16676292	.	+	.	Ledus.S3G211100
Ledus.S3	AUGUSTUS	transcript	16674804	16676292	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	start_codon	16674804	16674806	.	+	0	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	CDS	16674804	16674926	0.54	+	0	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	exon	16674804	16674926	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	intron	16674927	16675002	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	CDS	16675003	16675053	0.77	+	0	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	exon	16675003	16675053	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	intron	16675054	16675305	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	CDS	16675306	16675335	0.85	+	0	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	exon	16675306	16675335	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	intron	16675336	16675408	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	CDS	16675409	16675441	0.91	+	0	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	exon	16675409	16675441	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	intron	16675442	16675534	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	CDS	16675535	16675676	1	+	0	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	exon	16675535	16675676	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	intron	16675677	16675755	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	CDS	16675756	16675910	1	+	2	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	exon	16675756	16675910	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	intron	16675911	16675986	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	CDS	16675987	16676292	0.98	+	0	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	exon	16675987	16676292	.	+	.	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
Ledus.S3	AUGUSTUS	stop_codon	16676293	16676295	.	+	0	transcript_id "Ledus.S3G211100.t1"; gene_id "Ledus.S3G211100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9505.t1 is derived from g10535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7499169	7503064	.	-	.	Ledus.S3G098200
Ledus.S3	AUGUSTUS	transcript	7499169	7503064	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	stop_codon	7499166	7499168	.	-	0	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7499169	7499336	1	-	0	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7499169	7499336	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7499337	7499506	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7499507	7499550	1	-	2	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7499507	7499550	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7499551	7499770	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7499771	7499834	1	-	0	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7499771	7499834	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7499835	7499933	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7499934	7500167	1	-	0	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7499934	7500167	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7500168	7500245	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7500246	7500389	1	-	0	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7500246	7500389	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7500390	7500731	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7500732	7501124	1	-	0	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7500732	7501124	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7501125	7501258	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7501259	7501334	1	-	1	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7501259	7501334	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7501335	7501424	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7501425	7501524	1	-	2	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7501425	7501524	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7501525	7501665	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7501666	7501699	1	-	0	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7501666	7501699	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7501700	7501788	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7501789	7501873	1	-	1	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7501789	7501873	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7501874	7501981	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7501982	7502046	1	-	0	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7501982	7502046	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7502047	7502205	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7502206	7502304	1	-	0	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7502206	7502304	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7502305	7502466	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7502467	7502532	1	-	0	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7502467	7502532	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	intron	7502533	7502797	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	CDS	7502798	7503064	1	-	0	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	exon	7502798	7503064	.	-	.	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
Ledus.S3	AUGUSTUS	start_codon	7503062	7503064	.	-	0	transcript_id "Ledus.S3G098200.t1"; gene_id "Ledus.S3G098200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10651.t1 is derived from g11681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16869877	16870840	.	+	.	Ledus.S3G212800
Ledus.S3	AUGUSTUS	transcript	16869877	16870840	.	+	.	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	start_codon	16869877	16869879	.	+	0	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	CDS	16869877	16869918	0.91	+	0	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	exon	16869877	16869918	.	+	.	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	intron	16869919	16870087	.	+	.	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	CDS	16870088	16870114	1	+	0	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	exon	16870088	16870114	.	+	.	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	intron	16870115	16870280	.	+	.	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	CDS	16870281	16870343	1	+	0	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	exon	16870281	16870343	.	+	.	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	intron	16870344	16870461	.	+	.	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	CDS	16870462	16870540	1	+	0	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	exon	16870462	16870540	.	+	.	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	intron	16870541	16870668	.	+	.	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	CDS	16870669	16870714	1	+	2	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	exon	16870669	16870714	.	+	.	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	intron	16870715	16870833	.	+	.	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	CDS	16870834	16870840	1	+	1	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	exon	16870834	16870840	.	+	.	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
Ledus.S3	AUGUSTUS	stop_codon	16870841	16870843	.	+	0	transcript_id "Ledus.S3G212800.t1"; gene_id "Ledus.S3G212800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9239.t1 is derived from g10269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5553027	5559054	.	-	.	Ledus.S3G071600
Ledus.S3	AUGUSTUS	transcript	5553027	5559054	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	stop_codon	5553024	5553026	.	-	0	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5553027	5553129	0.58	-	1	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5553027	5553129	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	intron	5553130	5553242	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5553243	5553565	0.46	-	0	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5553243	5553565	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	intron	5553566	5553675	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5553676	5553894	0.83	-	0	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5553676	5553894	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	intron	5553895	5553990	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5553991	5554342	0.99	-	1	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5553991	5554342	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	intron	5554343	5554668	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5554669	5554883	1	-	0	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5554669	5554883	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	intron	5554884	5554971	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5554972	5555395	1	-	1	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5554972	5555395	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	intron	5555396	5555501	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5555502	5555749	1	-	0	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5555502	5555749	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	intron	5555750	5555845	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5555846	5556058	1	-	0	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5555846	5556058	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	intron	5556059	5556138	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5556139	5557816	0.99	-	1	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5556139	5557816	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	intron	5557817	5558003	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5558004	5558266	1	-	0	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5558004	5558266	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	intron	5558267	5558357	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5558358	5558484	1	-	1	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5558358	5558484	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	intron	5558485	5558622	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5558623	5558792	1	-	0	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5558623	5558792	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	intron	5558793	5558892	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	CDS	5558893	5559054	1	-	0	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	exon	5558893	5559054	.	-	.	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
Ledus.S3	AUGUSTUS	start_codon	5559052	5559054	.	-	0	transcript_id "Ledus.S3G071600.t1"; gene_id "Ledus.S3G071600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2072.t1 is derived from g8935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14494538	14495179	.	-	.	Ledus.S2G195400
Ledus.S2	AUGUSTUS	transcript	14494538	14495179	.	-	.	transcript_id "Ledus.S2G195400.t1"; gene_id "Ledus.S2G195400"
Ledus.S2	AUGUSTUS	stop_codon	14494535	14494537	.	-	0	transcript_id "Ledus.S2G195400.t1"; gene_id "Ledus.S2G195400"
Ledus.S2	AUGUSTUS	CDS	14494538	14495179	0.87	-	0	transcript_id "Ledus.S2G195400.t1"; gene_id "Ledus.S2G195400"
Ledus.S2	AUGUSTUS	exon	14494538	14495179	.	-	.	transcript_id "Ledus.S2G195400.t1"; gene_id "Ledus.S2G195400"
Ledus.S2	AUGUSTUS	start_codon	14495177	14495179	.	-	0	transcript_id "Ledus.S2G195400.t1"; gene_id "Ledus.S2G195400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7788.t1 is derived from g12459.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6670208	6670510	.	-	.	Ledus.S5G056600
Ledus.S5	AUGUSTUS	transcript	6670208	6670510	.	-	.	transcript_id "Ledus.S5G056600.t1"; gene_id "Ledus.S5G056600"
Ledus.S5	AUGUSTUS	stop_codon	6670205	6670207	.	-	0	transcript_id "Ledus.S5G056600.t1"; gene_id "Ledus.S5G056600"
Ledus.S5	AUGUSTUS	CDS	6670208	6670510	0.95	-	0	transcript_id "Ledus.S5G056600.t1"; gene_id "Ledus.S5G056600"
Ledus.S5	AUGUSTUS	exon	6670208	6670510	.	-	.	transcript_id "Ledus.S5G056600.t1"; gene_id "Ledus.S5G056600"
Ledus.S5	AUGUSTUS	start_codon	6670508	6670510	.	-	0	transcript_id "Ledus.S5G056600.t1"; gene_id "Ledus.S5G056600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8300.t1 is derived from g12971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10596547	10597770	.	+	.	Ledus.S5G107800
Ledus.S5	AUGUSTUS	transcript	10596547	10597770	.	+	.	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	start_codon	10596547	10596549	.	+	0	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	CDS	10596547	10596582	1	+	0	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	exon	10596547	10596582	.	+	.	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	intron	10596583	10596755	.	+	.	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	CDS	10596756	10596842	1	+	0	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	exon	10596756	10596842	.	+	.	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	intron	10596843	10597014	.	+	.	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	CDS	10597015	10597051	0.75	+	0	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	exon	10597015	10597051	.	+	.	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	intron	10597052	10597150	.	+	.	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	CDS	10597151	10597209	0.88	+	2	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	exon	10597151	10597209	.	+	.	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	intron	10597210	10597349	.	+	.	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	CDS	10597350	10597413	0.71	+	0	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	exon	10597350	10597413	.	+	.	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	intron	10597414	10597684	.	+	.	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	CDS	10597685	10597770	0.57	+	2	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	exon	10597685	10597770	.	+	.	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
Ledus.S5	AUGUSTUS	stop_codon	10597771	10597773	.	+	0	transcript_id "Ledus.S5G107800.t1"; gene_id "Ledus.S5G107800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1200.t1 is derived from g8061.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8523390	8527565	.	-	.	Ledus.S2G108200
Ledus.S2	AUGUSTUS	transcript	8523390	8527565	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	stop_codon	8523387	8523389	.	-	0	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	CDS	8523390	8524273	0.94	-	2	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	exon	8523390	8524273	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	intron	8524274	8524422	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	CDS	8524423	8524482	0.95	-	2	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	exon	8524423	8524482	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	intron	8524483	8524566	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	CDS	8524567	8524688	0.99	-	1	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	exon	8524567	8524688	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	intron	8524689	8524860	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	CDS	8524861	8525034	0.96	-	1	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	exon	8524861	8525034	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	intron	8525035	8525147	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	CDS	8525148	8525344	0.92	-	0	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	exon	8525148	8525344	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	intron	8525345	8525509	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	CDS	8525510	8525607	1	-	2	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	exon	8525510	8525607	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	intron	8525608	8525710	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	CDS	8525711	8525896	0.98	-	2	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	exon	8525711	8525896	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	intron	8525897	8526030	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	CDS	8526031	8526085	1	-	0	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	exon	8526031	8526085	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	intron	8526086	8526184	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	CDS	8526185	8526292	1	-	0	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	exon	8526185	8526292	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	intron	8526293	8526429	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	CDS	8526430	8526542	1	-	2	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	exon	8526430	8526542	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	intron	8526543	8526877	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	CDS	8526878	8527565	0.66	-	0	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	exon	8526878	8527565	.	-	.	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
Ledus.S2	AUGUSTUS	start_codon	8527563	8527565	.	-	0	transcript_id "Ledus.S2G108200.t1"; gene_id "Ledus.S2G108200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1058.t1 is derived from g7919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7073302	7073712	.	+	.	Ledus.S2G094000
Ledus.S2	AUGUSTUS	transcript	7073302	7073712	.	+	.	transcript_id "Ledus.S2G094000.t1"; gene_id "Ledus.S2G094000"
Ledus.S2	AUGUSTUS	start_codon	7073302	7073304	.	+	0	transcript_id "Ledus.S2G094000.t1"; gene_id "Ledus.S2G094000"
Ledus.S2	AUGUSTUS	CDS	7073302	7073712	0.98	+	0	transcript_id "Ledus.S2G094000.t1"; gene_id "Ledus.S2G094000"
Ledus.S2	AUGUSTUS	exon	7073302	7073712	.	+	.	transcript_id "Ledus.S2G094000.t1"; gene_id "Ledus.S2G094000"
Ledus.S2	AUGUSTUS	stop_codon	7073713	7073715	.	+	0	transcript_id "Ledus.S2G094000.t1"; gene_id "Ledus.S2G094000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11798.t1 is derived from g5417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6833189	6834850	.	-	.	Ledus.S4G095400
Ledus.S4	AUGUSTUS	transcript	6833189	6834850	.	-	.	transcript_id "Ledus.S4G095400.t1"; gene_id "Ledus.S4G095400"
Ledus.S4	AUGUSTUS	stop_codon	6833186	6833188	.	-	0	transcript_id "Ledus.S4G095400.t1"; gene_id "Ledus.S4G095400"
Ledus.S4	AUGUSTUS	CDS	6833189	6834850	0.91	-	0	transcript_id "Ledus.S4G095400.t1"; gene_id "Ledus.S4G095400"
Ledus.S4	AUGUSTUS	exon	6833189	6834850	.	-	.	transcript_id "Ledus.S4G095400.t1"; gene_id "Ledus.S4G095400"
Ledus.S4	AUGUSTUS	start_codon	6834848	6834850	.	-	0	transcript_id "Ledus.S4G095400.t1"; gene_id "Ledus.S4G095400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg477.t1 is derived from g7338.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2806050	2806824	.	-	.	Ledus.S2G035900
Ledus.S2	AUGUSTUS	transcript	2806050	2806824	.	-	.	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	stop_codon	2806047	2806049	.	-	0	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	CDS	2806050	2806052	1	-	0	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	exon	2806050	2806052	.	-	.	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	intron	2806053	2806264	.	-	.	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	CDS	2806265	2806491	1	-	2	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	exon	2806265	2806491	.	-	.	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	intron	2806492	2806577	.	-	.	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	CDS	2806578	2806644	1	-	0	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	exon	2806578	2806644	.	-	.	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	intron	2806645	2806731	.	-	.	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	CDS	2806732	2806824	0.88	-	0	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	exon	2806732	2806824	.	-	.	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
Ledus.S2	AUGUSTUS	start_codon	2806822	2806824	.	-	0	transcript_id "Ledus.S2G035900.t1"; gene_id "Ledus.S2G035900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6937.t1 is derived from g4381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35661836	35663941	.	-	.	Ledus.S1G435800
Ledus.S1	AUGUSTUS	transcript	35661836	35663941	.	-	.	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	stop_codon	35661833	35661835	.	-	0	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	CDS	35661836	35662253	0.85	-	1	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	exon	35661836	35662253	.	-	.	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	intron	35662254	35662348	.	-	.	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	CDS	35662349	35663289	0.86	-	0	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	exon	35662349	35663289	.	-	.	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	intron	35663290	35663373	.	-	.	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	CDS	35663374	35663465	1	-	2	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	exon	35663374	35663465	.	-	.	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	intron	35663466	35663635	.	-	.	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	CDS	35663636	35663696	0.92	-	0	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	exon	35663636	35663696	.	-	.	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	intron	35663697	35663878	.	-	.	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	CDS	35663879	35663941	0.82	-	0	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	exon	35663879	35663941	.	-	.	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
Ledus.S1	AUGUSTUS	start_codon	35663939	35663941	.	-	0	transcript_id "Ledus.S1G435800.t1"; gene_id "Ledus.S1G435800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6826.t1 is derived from g4270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34532826	34533299	.	+	.	Ledus.S1G424700
Ledus.S1	AUGUSTUS	transcript	34532826	34533299	.	+	.	transcript_id "Ledus.S1G424700.t1"; gene_id "Ledus.S1G424700"
Ledus.S1	AUGUSTUS	start_codon	34532826	34532828	.	+	0	transcript_id "Ledus.S1G424700.t1"; gene_id "Ledus.S1G424700"
Ledus.S1	AUGUSTUS	CDS	34532826	34533299	1	+	0	transcript_id "Ledus.S1G424700.t1"; gene_id "Ledus.S1G424700"
Ledus.S1	AUGUSTUS	exon	34532826	34533299	.	+	.	transcript_id "Ledus.S1G424700.t1"; gene_id "Ledus.S1G424700"
Ledus.S1	AUGUSTUS	stop_codon	34533300	34533302	.	+	0	transcript_id "Ledus.S1G424700.t1"; gene_id "Ledus.S1G424700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7616.t1 is derived from g12287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4383963	4384462	.	-	.	Ledus.S5G039400
Ledus.S5	AUGUSTUS	transcript	4383963	4384462	.	-	.	transcript_id "Ledus.S5G039400.t1"; gene_id "Ledus.S5G039400"
Ledus.S5	AUGUSTUS	stop_codon	4383960	4383962	.	-	0	transcript_id "Ledus.S5G039400.t1"; gene_id "Ledus.S5G039400"
Ledus.S5	AUGUSTUS	CDS	4383963	4384257	0.99	-	1	transcript_id "Ledus.S5G039400.t1"; gene_id "Ledus.S5G039400"
Ledus.S5	AUGUSTUS	exon	4383963	4384257	.	-	.	transcript_id "Ledus.S5G039400.t1"; gene_id "Ledus.S5G039400"
Ledus.S5	AUGUSTUS	intron	4384258	4384358	.	-	.	transcript_id "Ledus.S5G039400.t1"; gene_id "Ledus.S5G039400"
Ledus.S5	AUGUSTUS	CDS	4384359	4384462	0.69	-	0	transcript_id "Ledus.S5G039400.t1"; gene_id "Ledus.S5G039400"
Ledus.S5	AUGUSTUS	exon	4384359	4384462	.	-	.	transcript_id "Ledus.S5G039400.t1"; gene_id "Ledus.S5G039400"
Ledus.S5	AUGUSTUS	start_codon	4384460	4384462	.	-	0	transcript_id "Ledus.S5G039400.t1"; gene_id "Ledus.S5G039400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8487.t1 is derived from g13159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12178950	12180005	.	+	.	Ledus.S5G126500
Ledus.S5	AUGUSTUS	transcript	12178950	12180005	.	+	.	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	start_codon	12178950	12178952	.	+	0	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	CDS	12178950	12179187	0.95	+	0	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	exon	12178950	12179187	.	+	.	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	intron	12179188	12179271	.	+	.	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	CDS	12179272	12179403	1	+	2	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	exon	12179272	12179403	.	+	.	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	intron	12179404	12179493	.	+	.	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	CDS	12179494	12179726	1	+	2	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	exon	12179494	12179726	.	+	.	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	intron	12179727	12179807	.	+	.	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	CDS	12179808	12180005	1	+	0	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	exon	12179808	12180005	.	+	.	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
Ledus.S5	AUGUSTUS	stop_codon	12180006	12180008	.	+	0	transcript_id "Ledus.S5G126500.t1"; gene_id "Ledus.S5G126500"
# This transcript jg2789.t2 is derived from g223.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2790.t1 is derived from g224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3800385	3804396	.	+	.	Ledus.S1G021100
Ledus.S1	AUGUSTUS	transcript	3800385	3804396	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	start_codon	3800385	3800387	.	+	0	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	CDS	3800385	3800935	0.79	+	0	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	exon	3800385	3800935	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	intron	3800936	3801161	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	CDS	3801162	3801869	0.85	+	1	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	exon	3801162	3801869	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	intron	3801870	3802047	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	CDS	3802048	3802135	1	+	1	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	exon	3802048	3802135	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	intron	3802136	3802300	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	CDS	3802301	3802363	1	+	0	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	exon	3802301	3802363	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	intron	3802364	3802489	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	CDS	3802490	3802650	1	+	0	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	exon	3802490	3802650	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	intron	3802651	3802752	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	CDS	3802753	3802828	1	+	1	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	exon	3802753	3802828	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	intron	3802829	3802932	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	CDS	3802933	3802992	1	+	0	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	exon	3802933	3802992	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	intron	3802993	3803088	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	CDS	3803089	3803205	1	+	0	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	exon	3803089	3803205	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	intron	3803206	3803332	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	CDS	3803333	3803587	1	+	0	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	exon	3803333	3803587	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	intron	3803588	3803679	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	CDS	3803680	3803777	0.99	+	0	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	exon	3803680	3803777	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	intron	3803778	3803897	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	CDS	3803898	3804396	0.99	+	1	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	exon	3803898	3804396	.	+	.	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
Ledus.S1	AUGUSTUS	stop_codon	3804397	3804399	.	+	0	transcript_id "Ledus.S1G021100.t1"; gene_id "Ledus.S1G021100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11887.t1 is derived from g5506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7543298	7545198	.	-	.	Ledus.S4G104300
Ledus.S4	AUGUSTUS	transcript	7543298	7545198	.	-	.	transcript_id "Ledus.S4G104300.t1"; gene_id "Ledus.S4G104300"
Ledus.S4	AUGUSTUS	stop_codon	7543295	7543297	.	-	0	transcript_id "Ledus.S4G104300.t1"; gene_id "Ledus.S4G104300"
Ledus.S4	AUGUSTUS	CDS	7543298	7543696	1	-	0	transcript_id "Ledus.S4G104300.t1"; gene_id "Ledus.S4G104300"
Ledus.S4	AUGUSTUS	exon	7543298	7543696	.	-	.	transcript_id "Ledus.S4G104300.t1"; gene_id "Ledus.S4G104300"
Ledus.S4	AUGUSTUS	intron	7543697	7543787	.	-	.	transcript_id "Ledus.S4G104300.t1"; gene_id "Ledus.S4G104300"
Ledus.S4	AUGUSTUS	CDS	7543788	7545014	0.78	-	0	transcript_id "Ledus.S4G104300.t1"; gene_id "Ledus.S4G104300"
Ledus.S4	AUGUSTUS	exon	7543788	7545014	.	-	.	transcript_id "Ledus.S4G104300.t1"; gene_id "Ledus.S4G104300"
Ledus.S4	AUGUSTUS	intron	7545015	7545096	.	-	.	transcript_id "Ledus.S4G104300.t1"; gene_id "Ledus.S4G104300"
Ledus.S4	AUGUSTUS	CDS	7545097	7545198	0.77	-	0	transcript_id "Ledus.S4G104300.t1"; gene_id "Ledus.S4G104300"
Ledus.S4	AUGUSTUS	exon	7545097	7545198	.	-	.	transcript_id "Ledus.S4G104300.t1"; gene_id "Ledus.S4G104300"
Ledus.S4	AUGUSTUS	start_codon	7545196	7545198	.	-	0	transcript_id "Ledus.S4G104300.t1"; gene_id "Ledus.S4G104300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4445.t1 is derived from g1881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17138466	17139269	.	-	.	Ledus.S1G186600
Ledus.S1	AUGUSTUS	transcript	17138466	17139269	.	-	.	transcript_id "Ledus.S1G186600.t1"; gene_id "Ledus.S1G186600"
Ledus.S1	AUGUSTUS	stop_codon	17138463	17138465	.	-	0	transcript_id "Ledus.S1G186600.t1"; gene_id "Ledus.S1G186600"
Ledus.S1	AUGUSTUS	CDS	17138466	17139269	0.57	-	0	transcript_id "Ledus.S1G186600.t1"; gene_id "Ledus.S1G186600"
Ledus.S1	AUGUSTUS	exon	17138466	17139269	.	-	.	transcript_id "Ledus.S1G186600.t1"; gene_id "Ledus.S1G186600"
Ledus.S1	AUGUSTUS	start_codon	17139267	17139269	.	-	0	transcript_id "Ledus.S1G186600.t1"; gene_id "Ledus.S1G186600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12001.t1 is derived from g5620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8407443	8407908	.	-	.	Ledus.S4G115700
Ledus.S4	AUGUSTUS	transcript	8407443	8407908	.	-	.	transcript_id "Ledus.S4G115700.t1"; gene_id "Ledus.S4G115700"
Ledus.S4	AUGUSTUS	stop_codon	8407440	8407442	.	-	0	transcript_id "Ledus.S4G115700.t1"; gene_id "Ledus.S4G115700"
Ledus.S4	AUGUSTUS	CDS	8407443	8407676	0.75	-	0	transcript_id "Ledus.S4G115700.t1"; gene_id "Ledus.S4G115700"
Ledus.S4	AUGUSTUS	exon	8407443	8407676	.	-	.	transcript_id "Ledus.S4G115700.t1"; gene_id "Ledus.S4G115700"
Ledus.S4	AUGUSTUS	intron	8407677	8407758	.	-	.	transcript_id "Ledus.S4G115700.t1"; gene_id "Ledus.S4G115700"
Ledus.S4	AUGUSTUS	CDS	8407759	8407908	0.41	-	0	transcript_id "Ledus.S4G115700.t1"; gene_id "Ledus.S4G115700"
Ledus.S4	AUGUSTUS	exon	8407759	8407908	.	-	.	transcript_id "Ledus.S4G115700.t1"; gene_id "Ledus.S4G115700"
Ledus.S4	AUGUSTUS	start_codon	8407906	8407908	.	-	0	transcript_id "Ledus.S4G115700.t1"; gene_id "Ledus.S4G115700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1234.t1 is derived from g8095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8771614	8774979	.	+	.	Ledus.S2G111600
Ledus.S2	AUGUSTUS	transcript	8771614	8774979	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	start_codon	8771614	8771616	.	+	0	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	CDS	8771614	8772705	1	+	0	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	exon	8771614	8772705	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	intron	8772706	8772820	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	CDS	8772821	8772902	1	+	0	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	exon	8772821	8772902	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	intron	8772903	8773007	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	CDS	8773008	8773104	1	+	2	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	exon	8773008	8773104	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	intron	8773105	8773237	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	CDS	8773238	8773301	1	+	1	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	exon	8773238	8773301	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	intron	8773302	8773434	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	CDS	8773435	8773491	1	+	0	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	exon	8773435	8773491	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	intron	8773492	8773627	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	CDS	8773628	8773665	1	+	0	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	exon	8773628	8773665	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	intron	8773666	8773762	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	CDS	8773763	8773844	1	+	1	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	exon	8773763	8773844	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	intron	8773845	8773987	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	CDS	8773988	8774073	1	+	0	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	exon	8773988	8774073	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	intron	8774074	8774687	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	CDS	8774688	8774832	0.99	+	1	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	exon	8774688	8774832	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	intron	8774833	8774928	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	CDS	8774929	8774979	1	+	0	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	exon	8774929	8774979	.	+	.	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
Ledus.S2	AUGUSTUS	stop_codon	8774980	8774982	.	+	0	transcript_id "Ledus.S2G111600.t1"; gene_id "Ledus.S2G111600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9740.t1 is derived from g10770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9519780	9520016	.	-	.	Ledus.S3G121700
Ledus.S3	AUGUSTUS	transcript	9519780	9520016	.	-	.	transcript_id "Ledus.S3G121700.t1"; gene_id "Ledus.S3G121700"
Ledus.S3	AUGUSTUS	stop_codon	9519777	9519779	.	-	0	transcript_id "Ledus.S3G121700.t1"; gene_id "Ledus.S3G121700"
Ledus.S3	AUGUSTUS	CDS	9519780	9520016	0.93	-	0	transcript_id "Ledus.S3G121700.t1"; gene_id "Ledus.S3G121700"
Ledus.S3	AUGUSTUS	exon	9519780	9520016	.	-	.	transcript_id "Ledus.S3G121700.t1"; gene_id "Ledus.S3G121700"
Ledus.S3	AUGUSTUS	start_codon	9520014	9520016	.	-	0	transcript_id "Ledus.S3G121700.t1"; gene_id "Ledus.S3G121700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3894.t1 is derived from g1330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13465642	13466437	.	-	.	Ledus.S1G131500
Ledus.S1	AUGUSTUS	transcript	13465642	13466437	.	-	.	transcript_id "Ledus.S1G131500.t1"; gene_id "Ledus.S1G131500"
Ledus.S1	AUGUSTUS	stop_codon	13465639	13465641	.	-	0	transcript_id "Ledus.S1G131500.t1"; gene_id "Ledus.S1G131500"
Ledus.S1	AUGUSTUS	CDS	13465642	13465866	0.97	-	0	transcript_id "Ledus.S1G131500.t1"; gene_id "Ledus.S1G131500"
Ledus.S1	AUGUSTUS	exon	13465642	13465866	.	-	.	transcript_id "Ledus.S1G131500.t1"; gene_id "Ledus.S1G131500"
Ledus.S1	AUGUSTUS	intron	13465867	13465961	.	-	.	transcript_id "Ledus.S1G131500.t1"; gene_id "Ledus.S1G131500"
Ledus.S1	AUGUSTUS	CDS	13465962	13466094	1	-	1	transcript_id "Ledus.S1G131500.t1"; gene_id "Ledus.S1G131500"
Ledus.S1	AUGUSTUS	exon	13465962	13466094	.	-	.	transcript_id "Ledus.S1G131500.t1"; gene_id "Ledus.S1G131500"
Ledus.S1	AUGUSTUS	intron	13466095	13466168	.	-	.	transcript_id "Ledus.S1G131500.t1"; gene_id "Ledus.S1G131500"
Ledus.S1	AUGUSTUS	CDS	13466169	13466437	1	-	0	transcript_id "Ledus.S1G131500.t1"; gene_id "Ledus.S1G131500"
Ledus.S1	AUGUSTUS	exon	13466169	13466437	.	-	.	transcript_id "Ledus.S1G131500.t1"; gene_id "Ledus.S1G131500"
Ledus.S1	AUGUSTUS	start_codon	13466435	13466437	.	-	0	transcript_id "Ledus.S1G131500.t1"; gene_id "Ledus.S1G131500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4747.t1 is derived from g2185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19536283	19536696	.	-	.	Ledus.S1G216800
Ledus.S1	AUGUSTUS	transcript	19536283	19536696	.	-	.	transcript_id "Ledus.S1G216800.t1"; gene_id "Ledus.S1G216800"
Ledus.S1	AUGUSTUS	stop_codon	19536280	19536282	.	-	0	transcript_id "Ledus.S1G216800.t1"; gene_id "Ledus.S1G216800"
Ledus.S1	AUGUSTUS	CDS	19536283	19536696	0.75	-	0	transcript_id "Ledus.S1G216800.t1"; gene_id "Ledus.S1G216800"
Ledus.S1	AUGUSTUS	exon	19536283	19536696	.	-	.	transcript_id "Ledus.S1G216800.t1"; gene_id "Ledus.S1G216800"
Ledus.S1	AUGUSTUS	start_codon	19536694	19536696	.	-	0	transcript_id "Ledus.S1G216800.t1"; gene_id "Ledus.S1G216800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5814.t1 is derived from g3256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27069892	27071397	.	-	.	Ledus.S1G323500
Ledus.S1	AUGUSTUS	transcript	27069892	27071397	.	-	.	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	stop_codon	27069889	27069891	.	-	0	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	CDS	27069892	27070152	0.96	-	0	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	exon	27069892	27070152	.	-	.	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	intron	27070153	27070257	.	-	.	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	CDS	27070258	27070390	0.95	-	1	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	exon	27070258	27070390	.	-	.	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	intron	27070391	27070566	.	-	.	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	CDS	27070567	27070803	1	-	1	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	exon	27070567	27070803	.	-	.	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	intron	27070804	27070896	.	-	.	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	CDS	27070897	27070964	1	-	0	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	exon	27070897	27070964	.	-	.	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	intron	27070965	27071151	.	-	.	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	CDS	27071152	27071397	0.77	-	0	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	exon	27071152	27071397	.	-	.	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
Ledus.S1	AUGUSTUS	start_codon	27071395	27071397	.	-	0	transcript_id "Ledus.S1G323500.t1"; gene_id "Ledus.S1G323500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7347.t1 is derived from g12018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1317126	1319072	.	-	.	Ledus.S5G012500
Ledus.S5	AUGUSTUS	transcript	1317126	1319072	.	-	.	transcript_id "Ledus.S5G012500.t1"; gene_id "Ledus.S5G012500"
Ledus.S5	AUGUSTUS	stop_codon	1317123	1317125	.	-	0	transcript_id "Ledus.S5G012500.t1"; gene_id "Ledus.S5G012500"
Ledus.S5	AUGUSTUS	CDS	1317126	1319072	1	-	0	transcript_id "Ledus.S5G012500.t1"; gene_id "Ledus.S5G012500"
Ledus.S5	AUGUSTUS	exon	1317126	1319072	.	-	.	transcript_id "Ledus.S5G012500.t1"; gene_id "Ledus.S5G012500"
Ledus.S5	AUGUSTUS	start_codon	1319070	1319072	.	-	0	transcript_id "Ledus.S5G012500.t1"; gene_id "Ledus.S5G012500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7292.t1 is derived from g11963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	827598	828204	.	-	.	Ledus.S5G007000
Ledus.S5	AUGUSTUS	transcript	827598	828204	.	-	.	transcript_id "Ledus.S5G007000.t1"; gene_id "Ledus.S5G007000"
Ledus.S5	AUGUSTUS	stop_codon	827595	827597	.	-	0	transcript_id "Ledus.S5G007000.t1"; gene_id "Ledus.S5G007000"
Ledus.S5	AUGUSTUS	CDS	827598	827784	0.59	-	1	transcript_id "Ledus.S5G007000.t1"; gene_id "Ledus.S5G007000"
Ledus.S5	AUGUSTUS	exon	827598	827784	.	-	.	transcript_id "Ledus.S5G007000.t1"; gene_id "Ledus.S5G007000"
Ledus.S5	AUGUSTUS	intron	827785	828106	.	-	.	transcript_id "Ledus.S5G007000.t1"; gene_id "Ledus.S5G007000"
Ledus.S5	AUGUSTUS	CDS	828107	828204	0.28	-	0	transcript_id "Ledus.S5G007000.t1"; gene_id "Ledus.S5G007000"
Ledus.S5	AUGUSTUS	exon	828107	828204	.	-	.	transcript_id "Ledus.S5G007000.t1"; gene_id "Ledus.S5G007000"
Ledus.S5	AUGUSTUS	start_codon	828202	828204	.	-	0	transcript_id "Ledus.S5G007000.t1"; gene_id "Ledus.S5G007000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg372.t1 is derived from g7233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2000333	2003848	.	+	.	Ledus.S2G025400
Ledus.S2	AUGUSTUS	transcript	2000333	2003848	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	start_codon	2000333	2000335	.	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2000333	2000361	1	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2000333	2000361	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2000362	2000484	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2000485	2000558	1	+	1	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2000485	2000558	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2000559	2000633	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2000634	2000695	1	+	2	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2000634	2000695	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2000696	2000815	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2000816	2000968	1	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2000816	2000968	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2000969	2001162	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2001163	2001211	0.85	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2001163	2001211	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2001212	2001314	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2001315	2001398	1	+	2	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2001315	2001398	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2001399	2001534	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2001535	2001638	1	+	2	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2001535	2001638	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2001639	2001761	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2001762	2001848	1	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2001762	2001848	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2001849	2001998	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2001999	2002052	1	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2001999	2002052	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2002053	2002196	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2002197	2002292	1	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2002197	2002292	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2002293	2002382	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2002383	2002510	1	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2002383	2002510	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2002511	2002722	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2002723	2002849	0.96	+	1	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2002723	2002849	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2002850	2002962	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2002963	2003022	1	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2002963	2003022	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2003023	2003154	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2003155	2003262	0.83	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2003155	2003262	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2003263	2003380	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2003381	2003481	0.99	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2003381	2003481	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2003482	2003591	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2003592	2003643	0.99	+	1	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2003592	2003643	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	intron	2003644	2003752	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	CDS	2003753	2003848	0.97	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	exon	2003753	2003848	.	+	.	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
Ledus.S2	AUGUSTUS	stop_codon	2003849	2003851	.	+	0	transcript_id "Ledus.S2G025400.t1"; gene_id "Ledus.S2G025400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4649.t1 is derived from g2087.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18640678	18643807	.	+	.	Ledus.S1G207000
Ledus.S1	AUGUSTUS	transcript	18640678	18643807	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	start_codon	18640678	18640680	.	+	0	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	CDS	18640678	18642312	0.15	+	0	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	exon	18640678	18642312	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	intron	18642313	18642405	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	CDS	18642406	18642621	1	+	0	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	exon	18642406	18642621	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	intron	18642622	18642708	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	CDS	18642709	18642774	1	+	0	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	exon	18642709	18642774	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	intron	18642775	18642863	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	CDS	18642864	18642932	1	+	0	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	exon	18642864	18642932	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	intron	18642933	18643014	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	CDS	18643015	18643086	1	+	0	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	exon	18643015	18643086	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	intron	18643087	18643182	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	CDS	18643183	18643464	1	+	0	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	exon	18643183	18643464	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	intron	18643465	18643582	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	CDS	18643583	18643697	0.78	+	0	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	exon	18643583	18643697	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	intron	18643698	18643772	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	CDS	18643773	18643807	1	+	2	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	exon	18643773	18643807	.	+	.	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
Ledus.S1	AUGUSTUS	stop_codon	18643808	18643810	.	+	0	transcript_id "Ledus.S1G207000.t1"; gene_id "Ledus.S1G207000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10584.t1 is derived from g11614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16255556	16257516	.	+	.	Ledus.S3G206100
Ledus.S3	AUGUSTUS	transcript	16255556	16257516	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	start_codon	16255556	16255558	.	+	0	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	CDS	16255556	16255703	0.49	+	0	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	exon	16255556	16255703	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	intron	16255704	16256029	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	CDS	16256030	16256438	1	+	2	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	exon	16256030	16256438	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	intron	16256439	16256522	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	CDS	16256523	16256562	0.7	+	1	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	exon	16256523	16256562	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	intron	16256563	16256643	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	CDS	16256644	16256759	0.71	+	0	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	exon	16256644	16256759	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	intron	16256760	16256852	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	CDS	16256853	16256867	0.97	+	1	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	exon	16256853	16256867	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	intron	16256868	16257209	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	CDS	16257210	16257357	0.63	+	1	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	exon	16257210	16257357	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	intron	16257358	16257441	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	CDS	16257442	16257516	0.74	+	0	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	exon	16257442	16257516	.	+	.	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
Ledus.S3	AUGUSTUS	stop_codon	16257517	16257519	.	+	0	transcript_id "Ledus.S3G206100.t1"; gene_id "Ledus.S3G206100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5792.t1 is derived from g3234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26893523	26895508	.	+	.	Ledus.S1G321300
Ledus.S1	AUGUSTUS	transcript	26893523	26895508	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	start_codon	26893523	26893525	.	+	0	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	CDS	26893523	26893577	1	+	0	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	exon	26893523	26893577	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	intron	26893578	26893729	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	CDS	26893730	26893846	1	+	2	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	exon	26893730	26893846	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	intron	26893847	26893955	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	CDS	26893956	26894149	0.97	+	2	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	exon	26893956	26894149	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	intron	26894150	26894256	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	CDS	26894257	26894362	0.94	+	0	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	exon	26894257	26894362	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	intron	26894363	26894472	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	CDS	26894473	26894665	0.98	+	2	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	exon	26894473	26894665	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	intron	26894666	26894755	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	CDS	26894756	26894895	1	+	1	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	exon	26894756	26894895	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	intron	26894896	26894979	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	CDS	26894980	26895146	1	+	2	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	exon	26894980	26895146	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	intron	26895147	26895226	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	CDS	26895227	26895508	0.75	+	0	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	exon	26895227	26895508	.	+	.	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
Ledus.S1	AUGUSTUS	stop_codon	26895509	26895511	.	+	0	transcript_id "Ledus.S1G321300.t1"; gene_id "Ledus.S1G321300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10659.t1 is derived from g11689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16887769	16890135	.	-	.	Ledus.S3G213600
Ledus.S3	AUGUSTUS	transcript	16887769	16890135	.	-	.	transcript_id "Ledus.S3G213600.t1"; gene_id "Ledus.S3G213600"
Ledus.S3	AUGUSTUS	stop_codon	16887766	16887768	.	-	0	transcript_id "Ledus.S3G213600.t1"; gene_id "Ledus.S3G213600"
Ledus.S3	AUGUSTUS	CDS	16887769	16890135	1	-	0	transcript_id "Ledus.S3G213600.t1"; gene_id "Ledus.S3G213600"
Ledus.S3	AUGUSTUS	exon	16887769	16890135	.	-	.	transcript_id "Ledus.S3G213600.t1"; gene_id "Ledus.S3G213600"
Ledus.S3	AUGUSTUS	start_codon	16890133	16890135	.	-	0	transcript_id "Ledus.S3G213600.t1"; gene_id "Ledus.S3G213600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6088.t1 is derived from g3531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28867280	28869408	.	+	.	Ledus.S1G350900
Ledus.S1	AUGUSTUS	transcript	28867280	28869408	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	start_codon	28867280	28867282	.	+	0	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	CDS	28867280	28867284	1	+	0	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	exon	28867280	28867284	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	intron	28867285	28867369	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	CDS	28867370	28867415	1	+	1	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	exon	28867370	28867415	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	intron	28867416	28867582	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	CDS	28867583	28867644	1	+	0	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	exon	28867583	28867644	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	intron	28867645	28867734	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	CDS	28867735	28867854	1	+	1	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	exon	28867735	28867854	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	intron	28867855	28867943	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	CDS	28867944	28868043	1	+	1	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	exon	28867944	28868043	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	intron	28868044	28868138	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	CDS	28868139	28868219	1	+	0	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	exon	28868139	28868219	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	intron	28868220	28868370	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	CDS	28868371	28868423	1	+	0	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	exon	28868371	28868423	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	intron	28868424	28868524	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	CDS	28868525	28868675	0.96	+	1	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	exon	28868525	28868675	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	intron	28868676	28868781	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	CDS	28868782	28868838	0.93	+	0	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	exon	28868782	28868838	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	intron	28868839	28868947	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	CDS	28868948	28869069	0.8	+	0	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	exon	28868948	28869069	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	intron	28869070	28869185	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	CDS	28869186	28869408	0.37	+	1	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	exon	28869186	28869408	.	+	.	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
Ledus.S1	AUGUSTUS	stop_codon	28869409	28869411	.	+	0	transcript_id "Ledus.S1G350900.t1"; gene_id "Ledus.S1G350900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8623.t1 is derived from g9653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	751868	754522	.	+	.	Ledus.S3G010000
Ledus.S3	AUGUSTUS	transcript	751868	754522	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	start_codon	751868	751870	.	+	0	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	CDS	751868	751903	0.79	+	0	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	exon	751868	751903	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	intron	751904	752119	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	CDS	752120	752230	0.99	+	0	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	exon	752120	752230	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	intron	752231	752465	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	CDS	752466	752552	1	+	0	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	exon	752466	752552	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	intron	752553	752709	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	CDS	752710	752747	1	+	0	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	exon	752710	752747	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	intron	752748	752916	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	CDS	752917	752998	1	+	1	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	exon	752917	752998	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	intron	752999	753200	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	CDS	753201	753304	0.66	+	0	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	exon	753201	753304	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	intron	753305	753407	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	CDS	753408	753585	0.66	+	1	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	exon	753408	753585	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	intron	753586	753684	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	CDS	753685	753777	1	+	0	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	exon	753685	753777	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	intron	753778	753992	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	CDS	753993	754011	0.98	+	0	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	exon	753993	754011	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	intron	754012	754164	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	CDS	754165	754207	1	+	2	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	exon	754165	754207	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	intron	754208	754360	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	CDS	754361	754444	0.83	+	1	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	exon	754361	754444	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	intron	754445	754521	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	CDS	754522	754522	0.78	+	1	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	exon	754522	754522	.	+	.	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
Ledus.S3	AUGUSTUS	stop_codon	754523	754525	.	+	0	transcript_id "Ledus.S3G010000.t1"; gene_id "Ledus.S3G010000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg122.t1 is derived from g6983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	30224	33223	.	-	.	Ledus.S2G000400
Ledus.S2	AUGUSTUS	transcript	30224	33223	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	stop_codon	30221	30223	.	-	0	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	CDS	30224	30475	0.89	-	0	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	exon	30224	30475	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	intron	30476	30591	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	CDS	30592	30792	1	-	0	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	exon	30592	30792	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	intron	30793	30953	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	CDS	30954	31262	1	-	0	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	exon	30954	31262	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	intron	31263	31386	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	CDS	31387	31764	0.96	-	0	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	exon	31387	31764	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	intron	31765	31861	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	CDS	31862	32115	1	-	2	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	exon	31862	32115	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	intron	32116	32246	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	CDS	32247	32394	1	-	0	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	exon	32247	32394	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	intron	32395	32477	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	CDS	32478	32627	1	-	0	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	exon	32478	32627	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	intron	32628	32706	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	CDS	32707	32953	1	-	1	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	exon	32707	32953	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	intron	32954	33089	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	CDS	33090	33223	0.93	-	0	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	exon	33090	33223	.	-	.	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
Ledus.S2	AUGUSTUS	start_codon	33221	33223	.	-	0	transcript_id "Ledus.S2G000400.t1"; gene_id "Ledus.S2G000400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4020.t1 is derived from g1456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14101699	14104611	.	+	.	Ledus.S1G144100
Ledus.S1	AUGUSTUS	transcript	14101699	14104611	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	start_codon	14101699	14101701	.	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14101699	14101710	0.96	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14101699	14101710	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14101711	14101784	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14101785	14101901	1	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14101785	14101901	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14101902	14102019	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14102020	14102078	1	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14102020	14102078	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14102079	14102167	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14102168	14102227	1	+	1	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14102168	14102227	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14102228	14102323	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14102324	14102377	1	+	1	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14102324	14102377	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14102378	14102464	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14102465	14102513	1	+	1	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14102465	14102513	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14102514	14102600	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14102601	14102648	0.93	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14102601	14102648	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14102649	14102762	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14102763	14102828	1	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14102763	14102828	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14102829	14102957	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14102958	14103008	1	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14102958	14103008	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14103009	14103153	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14103154	14103273	1	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14103154	14103273	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14103274	14103410	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14103411	14103495	0.81	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14103411	14103495	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14103496	14103596	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14103597	14103678	1	+	2	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14103597	14103678	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14103679	14103771	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14103772	14103886	1	+	1	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14103772	14103886	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14103887	14103987	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14103988	14104044	0.93	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14103988	14104044	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14104045	14104149	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14104150	14104196	1	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14104150	14104196	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14104197	14104271	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14104272	14104326	1	+	1	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14104272	14104326	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	intron	14104327	14104494	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	CDS	14104495	14104611	1	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	exon	14104495	14104611	.	+	.	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
Ledus.S1	AUGUSTUS	stop_codon	14104612	14104614	.	+	0	transcript_id "Ledus.S1G144100.t1"; gene_id "Ledus.S1G144100"
# This transcript jg1907.t2 is derived from g8770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1908.t1 is derived from g8771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13340098	13345473	.	-	.	Ledus.S2G179000
Ledus.S2	AUGUSTUS	transcript	13340098	13345473	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	stop_codon	13340095	13340097	.	-	0	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13340098	13340424	0.92	-	0	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13340098	13340424	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13340425	13340631	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13340632	13340769	1	-	0	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13340632	13340769	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13340770	13340916	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13340917	13341066	1	-	0	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13340917	13341066	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13341067	13341165	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13341166	13341226	1	-	1	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13341166	13341226	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13341227	13341326	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13341327	13341392	1	-	1	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13341327	13341392	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13341393	13341516	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13341517	13341975	1	-	1	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13341517	13341975	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13341976	13342116	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13342117	13342413	1	-	1	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13342117	13342413	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13342414	13342588	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13342589	13342708	1	-	1	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13342589	13342708	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13342709	13342981	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13342982	13343485	1	-	1	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13342982	13343485	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13343486	13343685	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13343686	13343795	1	-	0	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13343686	13343795	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13343796	13343979	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13343980	13344028	1	-	1	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13343980	13344028	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13344029	13344147	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13344148	13344258	1	-	1	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13344148	13344258	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13344259	13344445	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13344446	13344647	1	-	2	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13344446	13344647	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13344648	13345142	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13345143	13345181	0.67	-	2	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13345143	13345181	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13345182	13345269	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13345270	13345276	0.67	-	0	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13345270	13345276	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13345277	13345371	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13345372	13345473	0.67	-	0	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13345372	13345473	.	-	.	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	start_codon	13345471	13345473	.	-	0	transcript_id "Ledus.S2G179000.t1"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	transcript	13340098	13345473	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	stop_codon	13340095	13340097	.	-	0	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13340098	13340424	0.89	-	0	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13340098	13340424	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13340425	13340631	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13340632	13340769	1	-	0	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13340632	13340769	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13340770	13340916	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13340917	13341066	1	-	0	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13340917	13341066	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13341067	13341165	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13341166	13341226	1	-	1	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13341166	13341226	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13341227	13341326	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13341327	13341392	1	-	1	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13341327	13341392	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13341393	13341516	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13341517	13341975	1	-	1	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13341517	13341975	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13341976	13342116	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13342117	13342413	1	-	1	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13342117	13342413	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13342414	13342588	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13342589	13342708	1	-	1	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13342589	13342708	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13342709	13342981	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13342982	13343485	1	-	1	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13342982	13343485	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13343486	13343685	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13343686	13343795	1	-	0	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13343686	13343795	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13343796	13343979	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13343980	13344028	1	-	1	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13343980	13344028	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13344029	13344147	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13344148	13344258	1	-	1	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13344148	13344258	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13344259	13344445	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13344446	13344650	0.96	-	2	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13344446	13344650	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13344651	13345142	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13345143	13345181	0.64	-	2	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13345143	13345181	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13345182	13345269	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13345270	13345276	0.64	-	0	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13345270	13345276	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	intron	13345277	13345371	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	CDS	13345372	13345473	0.64	-	0	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	exon	13345372	13345473	.	-	.	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
Ledus.S2	AUGUSTUS	start_codon	13345471	13345473	.	-	0	transcript_id "Ledus.S2G179000.t2"; gene_id "Ledus.S2G179000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10569.t1 is derived from g11599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16201996	16206145	.	+	.	Ledus.S3G204600
Ledus.S3	AUGUSTUS	transcript	16201996	16206145	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	start_codon	16201996	16201998	.	+	0	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16201996	16202024	0.32	+	0	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16201996	16202024	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16202025	16202097	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16202098	16202152	0.33	+	1	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16202098	16202152	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16202153	16202248	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16202249	16202633	0.77	+	0	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16202249	16202633	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16202634	16203276	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16203277	16203975	0.99	+	2	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16203277	16203975	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16203976	16204121	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16204122	16204192	1	+	2	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16204122	16204192	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16204193	16204284	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16204285	16204354	1	+	0	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16204285	16204354	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16204355	16204446	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16204447	16204530	1	+	2	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16204447	16204530	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16204531	16204698	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16204699	16204775	1	+	2	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16204699	16204775	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16204776	16204881	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16204882	16204963	1	+	0	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16204882	16204963	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16204964	16205051	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16205052	16205134	0.99	+	2	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16205052	16205134	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16205135	16205241	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16205242	16205308	0.94	+	0	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16205242	16205308	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16205309	16205518	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16205519	16205653	0.99	+	2	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16205519	16205653	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16205654	16205764	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16205765	16205874	1	+	2	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16205765	16205874	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	intron	16205875	16206019	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	CDS	16206020	16206145	0.49	+	0	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	exon	16206020	16206145	.	+	.	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
Ledus.S3	AUGUSTUS	stop_codon	16206146	16206148	.	+	0	transcript_id "Ledus.S3G204600.t1"; gene_id "Ledus.S3G204600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2678.t1 is derived from g111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1621515	1621991	.	+	.	Ledus.S1G009900
Ledus.S1	AUGUSTUS	transcript	1621515	1621991	.	+	.	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	start_codon	1621515	1621517	.	+	0	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	CDS	1621515	1621546	0.45	+	0	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	exon	1621515	1621546	.	+	.	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	intron	1621547	1621617	.	+	.	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	CDS	1621618	1621669	0.61	+	1	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	exon	1621618	1621669	.	+	.	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	intron	1621670	1621740	.	+	.	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	CDS	1621741	1621884	1	+	0	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	exon	1621741	1621884	.	+	.	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	intron	1621885	1621973	.	+	.	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	CDS	1621974	1621991	1	+	0	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	exon	1621974	1621991	.	+	.	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
Ledus.S1	AUGUSTUS	stop_codon	1621992	1621994	.	+	0	transcript_id "Ledus.S1G009900.t1"; gene_id "Ledus.S1G009900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2489.t1 is derived from g9352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18447866	18448918	.	+	.	Ledus.S2G237100
Ledus.S2	AUGUSTUS	transcript	18447866	18448918	.	+	.	transcript_id "Ledus.S2G237100.t1"; gene_id "Ledus.S2G237100"
Ledus.S2	AUGUSTUS	start_codon	18447866	18447868	.	+	0	transcript_id "Ledus.S2G237100.t1"; gene_id "Ledus.S2G237100"
Ledus.S2	AUGUSTUS	CDS	18447866	18448918	0.68	+	0	transcript_id "Ledus.S2G237100.t1"; gene_id "Ledus.S2G237100"
Ledus.S2	AUGUSTUS	exon	18447866	18448918	.	+	.	transcript_id "Ledus.S2G237100.t1"; gene_id "Ledus.S2G237100"
Ledus.S2	AUGUSTUS	stop_codon	18448919	18448921	.	+	0	transcript_id "Ledus.S2G237100.t1"; gene_id "Ledus.S2G237100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8396.t1 is derived from g13068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11471197	11472510	.	-	.	Ledus.S5G117400
Ledus.S5	AUGUSTUS	transcript	11471197	11472510	.	-	.	transcript_id "Ledus.S5G117400.t1"; gene_id "Ledus.S5G117400"
Ledus.S5	AUGUSTUS	stop_codon	11471194	11471196	.	-	0	transcript_id "Ledus.S5G117400.t1"; gene_id "Ledus.S5G117400"
Ledus.S5	AUGUSTUS	CDS	11471197	11471888	1	-	2	transcript_id "Ledus.S5G117400.t1"; gene_id "Ledus.S5G117400"
Ledus.S5	AUGUSTUS	exon	11471197	11471888	.	-	.	transcript_id "Ledus.S5G117400.t1"; gene_id "Ledus.S5G117400"
Ledus.S5	AUGUSTUS	intron	11471889	11471963	.	-	.	transcript_id "Ledus.S5G117400.t1"; gene_id "Ledus.S5G117400"
Ledus.S5	AUGUSTUS	CDS	11471964	11472132	1	-	0	transcript_id "Ledus.S5G117400.t1"; gene_id "Ledus.S5G117400"
Ledus.S5	AUGUSTUS	exon	11471964	11472132	.	-	.	transcript_id "Ledus.S5G117400.t1"; gene_id "Ledus.S5G117400"
Ledus.S5	AUGUSTUS	intron	11472133	11472219	.	-	.	transcript_id "Ledus.S5G117400.t1"; gene_id "Ledus.S5G117400"
Ledus.S5	AUGUSTUS	CDS	11472220	11472510	0.69	-	0	transcript_id "Ledus.S5G117400.t1"; gene_id "Ledus.S5G117400"
Ledus.S5	AUGUSTUS	exon	11472220	11472510	.	-	.	transcript_id "Ledus.S5G117400.t1"; gene_id "Ledus.S5G117400"
Ledus.S5	AUGUSTUS	start_codon	11472508	11472510	.	-	0	transcript_id "Ledus.S5G117400.t1"; gene_id "Ledus.S5G117400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8801.t1 is derived from g9831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2044281	2045552	.	-	.	Ledus.S3G027800
Ledus.S3	AUGUSTUS	transcript	2044281	2045552	.	-	.	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	stop_codon	2044278	2044280	.	-	0	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	CDS	2044281	2044324	0.9	-	2	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	exon	2044281	2044324	.	-	.	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	intron	2044325	2044427	.	-	.	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	CDS	2044428	2044701	0.2	-	0	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	exon	2044428	2044701	.	-	.	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	intron	2044702	2044844	.	-	.	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	CDS	2044845	2044886	0.26	-	0	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	exon	2044845	2044886	.	-	.	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	intron	2044887	2044984	.	-	.	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	CDS	2044985	2045101	1	-	0	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	exon	2044985	2045101	.	-	.	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	intron	2045102	2045196	.	-	.	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	CDS	2045197	2045368	1	-	1	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	exon	2045197	2045368	.	-	.	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	intron	2045369	2045442	.	-	.	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	CDS	2045443	2045552	0.96	-	0	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	exon	2045443	2045552	.	-	.	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
Ledus.S3	AUGUSTUS	start_codon	2045550	2045552	.	-	0	transcript_id "Ledus.S3G027800.t1"; gene_id "Ledus.S3G027800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1306.t1 is derived from g8167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9195654	9196750	.	-	.	Ledus.S2G118800
Ledus.S2	AUGUSTUS	transcript	9195654	9196750	.	-	.	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	stop_codon	9195651	9195653	.	-	0	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	CDS	9195654	9195711	1	-	1	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	exon	9195654	9195711	.	-	.	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	intron	9195712	9195793	.	-	.	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	CDS	9195794	9195864	0.96	-	0	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	exon	9195794	9195864	.	-	.	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	intron	9195865	9195973	.	-	.	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	CDS	9195974	9196047	0.81	-	2	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	exon	9195974	9196047	.	-	.	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	intron	9196048	9196233	.	-	.	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	CDS	9196234	9196309	1	-	0	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	exon	9196234	9196309	.	-	.	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	intron	9196310	9196427	.	-	.	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	CDS	9196428	9196505	1	-	0	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	exon	9196428	9196505	.	-	.	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	intron	9196506	9196687	.	-	.	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	CDS	9196688	9196750	1	-	0	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	exon	9196688	9196750	.	-	.	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
Ledus.S2	AUGUSTUS	start_codon	9196748	9196750	.	-	0	transcript_id "Ledus.S2G118800.t1"; gene_id "Ledus.S2G118800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5272.t1 is derived from g2711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22812175	22814837	.	-	.	Ledus.S1G269300
Ledus.S1	AUGUSTUS	transcript	22812175	22814837	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	stop_codon	22812172	22812174	.	-	0	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	CDS	22812175	22812339	1	-	0	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	exon	22812175	22812339	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	intron	22812340	22812433	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	CDS	22812434	22812790	0.99	-	0	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	exon	22812434	22812790	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	intron	22812791	22812862	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	CDS	22812863	22813114	0.94	-	0	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	exon	22812863	22813114	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	intron	22813115	22813199	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	CDS	22813200	22813343	1	-	0	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	exon	22813200	22813343	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	intron	22813344	22813433	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	CDS	22813434	22813541	1	-	0	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	exon	22813434	22813541	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	intron	22813542	22813637	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	CDS	22813638	22813838	1	-	0	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	exon	22813638	22813838	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	intron	22813839	22813993	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	CDS	22813994	22814206	1	-	0	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	exon	22813994	22814206	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	intron	22814207	22814414	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	CDS	22814415	22814837	0.75	-	0	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	exon	22814415	22814837	.	-	.	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
Ledus.S1	AUGUSTUS	start_codon	22814835	22814837	.	-	0	transcript_id "Ledus.S1G269300.t1"; gene_id "Ledus.S1G269300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3789.t1 is derived from g1225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12154737	12157099	.	-	.	Ledus.S1G121000
Ledus.S1	AUGUSTUS	transcript	12154737	12157099	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	stop_codon	12154734	12154736	.	-	0	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	CDS	12154737	12154902	0.93	-	1	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	exon	12154737	12154902	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	intron	12154903	12155001	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	CDS	12155002	12155150	1	-	0	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	exon	12155002	12155150	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	intron	12155151	12155228	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	CDS	12155229	12155315	1	-	0	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	exon	12155229	12155315	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	intron	12155316	12155405	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	CDS	12155406	12155496	1	-	1	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	exon	12155406	12155496	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	intron	12155497	12155644	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	CDS	12155645	12155871	1	-	0	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	exon	12155645	12155871	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	intron	12155872	12155993	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	CDS	12155994	12156153	0.99	-	1	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	exon	12155994	12156153	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	intron	12156154	12156247	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	CDS	12156248	12156392	1	-	2	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	exon	12156248	12156392	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	intron	12156393	12156660	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	CDS	12156661	12157099	0.92	-	0	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	exon	12156661	12157099	.	-	.	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
Ledus.S1	AUGUSTUS	start_codon	12157097	12157099	.	-	0	transcript_id "Ledus.S1G121000.t1"; gene_id "Ledus.S1G121000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2417.t1 is derived from g9280.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18011305	18015416	.	+	.	Ledus.S2G229900
Ledus.S2	AUGUSTUS	transcript	18011305	18015416	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	start_codon	18011305	18011307	.	+	0	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	CDS	18011305	18011385	0.54	+	0	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	exon	18011305	18011385	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	intron	18011386	18011959	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	CDS	18011960	18012053	0.53	+	0	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	exon	18011960	18012053	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	intron	18012054	18012202	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	CDS	18012203	18012227	0.36	+	2	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	exon	18012203	18012227	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	intron	18012228	18012307	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	CDS	18012308	18012402	0.75	+	1	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	exon	18012308	18012402	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	intron	18012403	18012810	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	CDS	18012811	18012852	0.9	+	2	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	exon	18012811	18012852	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	intron	18012853	18013119	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	CDS	18013120	18013205	1	+	2	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	exon	18013120	18013205	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	intron	18013206	18013300	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	CDS	18013301	18013350	1	+	0	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	exon	18013301	18013350	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	intron	18013351	18013505	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	CDS	18013506	18013575	1	+	1	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	exon	18013506	18013575	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	intron	18013576	18013670	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	CDS	18013671	18013752	1	+	0	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	exon	18013671	18013752	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	intron	18013753	18013896	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	CDS	18013897	18014297	1	+	2	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	exon	18013897	18014297	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	intron	18014298	18014429	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	CDS	18014430	18015125	0.88	+	0	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	exon	18014430	18015125	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	intron	18015126	18015221	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	CDS	18015222	18015416	1	+	0	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	exon	18015222	18015416	.	+	.	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
Ledus.S2	AUGUSTUS	stop_codon	18015417	18015419	.	+	0	transcript_id "Ledus.S2G229900.t1"; gene_id "Ledus.S2G229900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5217.t1 is derived from g2656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22518768	22519004	.	-	.	Ledus.S1G263800
Ledus.S1	AUGUSTUS	transcript	22518768	22519004	.	-	.	transcript_id "Ledus.S1G263800.t1"; gene_id "Ledus.S1G263800"
Ledus.S1	AUGUSTUS	stop_codon	22518765	22518767	.	-	0	transcript_id "Ledus.S1G263800.t1"; gene_id "Ledus.S1G263800"
Ledus.S1	AUGUSTUS	CDS	22518768	22519004	0.89	-	0	transcript_id "Ledus.S1G263800.t1"; gene_id "Ledus.S1G263800"
Ledus.S1	AUGUSTUS	exon	22518768	22519004	.	-	.	transcript_id "Ledus.S1G263800.t1"; gene_id "Ledus.S1G263800"
Ledus.S1	AUGUSTUS	start_codon	22519002	22519004	.	-	0	transcript_id "Ledus.S1G263800.t1"; gene_id "Ledus.S1G263800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11207.t1 is derived from g4825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2709774	2711541	.	-	.	Ledus.S4G036300
Ledus.S4	AUGUSTUS	transcript	2709774	2711541	.	-	.	transcript_id "Ledus.S4G036300.t1"; gene_id "Ledus.S4G036300"
Ledus.S4	AUGUSTUS	stop_codon	2709771	2709773	.	-	0	transcript_id "Ledus.S4G036300.t1"; gene_id "Ledus.S4G036300"
Ledus.S4	AUGUSTUS	CDS	2709774	2710283	1	-	0	transcript_id "Ledus.S4G036300.t1"; gene_id "Ledus.S4G036300"
Ledus.S4	AUGUSTUS	exon	2709774	2710283	.	-	.	transcript_id "Ledus.S4G036300.t1"; gene_id "Ledus.S4G036300"
Ledus.S4	AUGUSTUS	intron	2710284	2710386	.	-	.	transcript_id "Ledus.S4G036300.t1"; gene_id "Ledus.S4G036300"
Ledus.S4	AUGUSTUS	CDS	2710387	2710983	1	-	0	transcript_id "Ledus.S4G036300.t1"; gene_id "Ledus.S4G036300"
Ledus.S4	AUGUSTUS	exon	2710387	2710983	.	-	.	transcript_id "Ledus.S4G036300.t1"; gene_id "Ledus.S4G036300"
Ledus.S4	AUGUSTUS	intron	2710984	2711070	.	-	.	transcript_id "Ledus.S4G036300.t1"; gene_id "Ledus.S4G036300"
Ledus.S4	AUGUSTUS	CDS	2711071	2711541	0.78	-	0	transcript_id "Ledus.S4G036300.t1"; gene_id "Ledus.S4G036300"
Ledus.S4	AUGUSTUS	exon	2711071	2711541	.	-	.	transcript_id "Ledus.S4G036300.t1"; gene_id "Ledus.S4G036300"
Ledus.S4	AUGUSTUS	start_codon	2711539	2711541	.	-	0	transcript_id "Ledus.S4G036300.t1"; gene_id "Ledus.S4G036300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5057.t1 is derived from g2496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21335668	21336238	.	-	.	Ledus.S1G247800
Ledus.S1	AUGUSTUS	transcript	21335668	21336238	.	-	.	transcript_id "Ledus.S1G247800.t1"; gene_id "Ledus.S1G247800"
Ledus.S1	AUGUSTUS	stop_codon	21335665	21335667	.	-	0	transcript_id "Ledus.S1G247800.t1"; gene_id "Ledus.S1G247800"
Ledus.S1	AUGUSTUS	CDS	21335668	21335767	0.79	-	1	transcript_id "Ledus.S1G247800.t1"; gene_id "Ledus.S1G247800"
Ledus.S1	AUGUSTUS	exon	21335668	21335767	.	-	.	transcript_id "Ledus.S1G247800.t1"; gene_id "Ledus.S1G247800"
Ledus.S1	AUGUSTUS	intron	21335768	21335858	.	-	.	transcript_id "Ledus.S1G247800.t1"; gene_id "Ledus.S1G247800"
Ledus.S1	AUGUSTUS	CDS	21335859	21336238	0.9	-	0	transcript_id "Ledus.S1G247800.t1"; gene_id "Ledus.S1G247800"
Ledus.S1	AUGUSTUS	exon	21335859	21336238	.	-	.	transcript_id "Ledus.S1G247800.t1"; gene_id "Ledus.S1G247800"
Ledus.S1	AUGUSTUS	start_codon	21336236	21336238	.	-	0	transcript_id "Ledus.S1G247800.t1"; gene_id "Ledus.S1G247800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2928.t1 is derived from g363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4627762	4628527	.	+	.	Ledus.S1G034900
Ledus.S1	AUGUSTUS	transcript	4627762	4628527	.	+	.	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	start_codon	4627762	4627764	.	+	0	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	CDS	4627762	4628014	0.87	+	0	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	exon	4627762	4628014	.	+	.	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	intron	4628015	4628103	.	+	.	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	CDS	4628104	4628211	0.97	+	2	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	exon	4628104	4628211	.	+	.	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	intron	4628212	4628285	.	+	.	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	CDS	4628286	4628381	0.51	+	2	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	exon	4628286	4628381	.	+	.	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	intron	4628382	4628453	.	+	.	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	CDS	4628454	4628527	0.34	+	2	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	exon	4628454	4628527	.	+	.	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
Ledus.S1	AUGUSTUS	stop_codon	4628528	4628530	.	+	0	transcript_id "Ledus.S1G034900.t1"; gene_id "Ledus.S1G034900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9647.t1 is derived from g10677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8733197	8735794	.	+	.	Ledus.S3G112400
Ledus.S3	AUGUSTUS	transcript	8733197	8735794	.	+	.	transcript_id "Ledus.S3G112400.t1"; gene_id "Ledus.S3G112400"
Ledus.S3	AUGUSTUS	start_codon	8733197	8733199	.	+	0	transcript_id "Ledus.S3G112400.t1"; gene_id "Ledus.S3G112400"
Ledus.S3	AUGUSTUS	CDS	8733197	8733387	0.55	+	0	transcript_id "Ledus.S3G112400.t1"; gene_id "Ledus.S3G112400"
Ledus.S3	AUGUSTUS	exon	8733197	8733387	.	+	.	transcript_id "Ledus.S3G112400.t1"; gene_id "Ledus.S3G112400"
Ledus.S3	AUGUSTUS	intron	8733388	8733480	.	+	.	transcript_id "Ledus.S3G112400.t1"; gene_id "Ledus.S3G112400"
Ledus.S3	AUGUSTUS	CDS	8733481	8735794	0.99	+	1	transcript_id "Ledus.S3G112400.t1"; gene_id "Ledus.S3G112400"
Ledus.S3	AUGUSTUS	exon	8733481	8735794	.	+	.	transcript_id "Ledus.S3G112400.t1"; gene_id "Ledus.S3G112400"
Ledus.S3	AUGUSTUS	stop_codon	8735795	8735797	.	+	0	transcript_id "Ledus.S3G112400.t1"; gene_id "Ledus.S3G112400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2883.t1 is derived from g318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4393820	4394374	.	-	.	Ledus.S1G030400
Ledus.S1	AUGUSTUS	transcript	4393820	4394374	.	-	.	transcript_id "Ledus.S1G030400.t1"; gene_id "Ledus.S1G030400"
Ledus.S1	AUGUSTUS	stop_codon	4393817	4393819	.	-	0	transcript_id "Ledus.S1G030400.t1"; gene_id "Ledus.S1G030400"
Ledus.S1	AUGUSTUS	CDS	4393820	4393880	0.53	-	1	transcript_id "Ledus.S1G030400.t1"; gene_id "Ledus.S1G030400"
Ledus.S1	AUGUSTUS	exon	4393820	4393880	.	-	.	transcript_id "Ledus.S1G030400.t1"; gene_id "Ledus.S1G030400"
Ledus.S1	AUGUSTUS	intron	4393881	4393961	.	-	.	transcript_id "Ledus.S1G030400.t1"; gene_id "Ledus.S1G030400"
Ledus.S1	AUGUSTUS	CDS	4393962	4394036	0.46	-	1	transcript_id "Ledus.S1G030400.t1"; gene_id "Ledus.S1G030400"
Ledus.S1	AUGUSTUS	exon	4393962	4394036	.	-	.	transcript_id "Ledus.S1G030400.t1"; gene_id "Ledus.S1G030400"
Ledus.S1	AUGUSTUS	intron	4394037	4394231	.	-	.	transcript_id "Ledus.S1G030400.t1"; gene_id "Ledus.S1G030400"
Ledus.S1	AUGUSTUS	CDS	4394232	4394374	0.39	-	0	transcript_id "Ledus.S1G030400.t1"; gene_id "Ledus.S1G030400"
Ledus.S1	AUGUSTUS	exon	4394232	4394374	.	-	.	transcript_id "Ledus.S1G030400.t1"; gene_id "Ledus.S1G030400"
Ledus.S1	AUGUSTUS	start_codon	4394372	4394374	.	-	0	transcript_id "Ledus.S1G030400.t1"; gene_id "Ledus.S1G030400"
# This transcript jg11564.t2 is derived from g5182.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11565.t1 is derived from g5183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5294080	5296148	.	+	.	Ledus.S4G072100
Ledus.S4	AUGUSTUS	transcript	5294080	5296148	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	start_codon	5294080	5294082	.	+	0	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	CDS	5294080	5294199	0.91	+	0	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	exon	5294080	5294199	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	intron	5294200	5294294	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	CDS	5294295	5294394	1	+	0	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	exon	5294295	5294394	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	intron	5294395	5294482	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	CDS	5294483	5294544	1	+	2	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	exon	5294483	5294544	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	intron	5294545	5294624	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	CDS	5294625	5294681	1	+	0	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	exon	5294625	5294681	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	intron	5294682	5294762	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	CDS	5294763	5294822	1	+	0	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	exon	5294763	5294822	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	intron	5294823	5294899	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	CDS	5294900	5294956	0.77	+	0	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	exon	5294900	5294956	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	intron	5294957	5295069	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	CDS	5295070	5295112	0.64	+	0	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	exon	5295070	5295112	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	intron	5295113	5295224	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	CDS	5295225	5295302	0.83	+	2	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	exon	5295225	5295302	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	intron	5295303	5295397	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	CDS	5295398	5295728	1	+	2	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	exon	5295398	5295728	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	intron	5295729	5295828	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	CDS	5295829	5295994	1	+	1	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	exon	5295829	5295994	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	intron	5295995	5296061	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	CDS	5296062	5296148	1	+	0	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	exon	5296062	5296148	.	+	.	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
Ledus.S4	AUGUSTUS	stop_codon	5296149	5296151	.	+	0	transcript_id "Ledus.S4G072100.t1"; gene_id "Ledus.S4G072100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12417.t1 is derived from g6038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11928936	11931652	.	-	.	Ledus.S4G157300
Ledus.S4	AUGUSTUS	transcript	11928936	11931652	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	stop_codon	11928933	11928935	.	-	0	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	CDS	11928936	11928958	1	-	2	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	exon	11928936	11928958	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	intron	11928959	11929174	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	CDS	11929175	11929238	1	-	0	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	exon	11929175	11929238	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	intron	11929239	11929379	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	CDS	11929380	11929520	1	-	0	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	exon	11929380	11929520	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	intron	11929521	11929613	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	CDS	11929614	11929747	1	-	2	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	exon	11929614	11929747	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	intron	11929748	11929979	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	CDS	11929980	11930048	1	-	2	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	exon	11929980	11930048	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	intron	11930049	11930138	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	CDS	11930139	11930203	1	-	1	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	exon	11930139	11930203	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	intron	11930204	11930313	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	CDS	11930314	11930351	1	-	0	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	exon	11930314	11930351	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	intron	11930352	11930518	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	CDS	11930519	11930617	1	-	0	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	exon	11930519	11930617	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	intron	11930618	11930731	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	CDS	11930732	11930908	0.99	-	0	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	exon	11930732	11930908	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	intron	11930909	11931040	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	CDS	11931041	11931652	0.89	-	0	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	exon	11931041	11931652	.	-	.	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
Ledus.S4	AUGUSTUS	start_codon	11931650	11931652	.	-	0	transcript_id "Ledus.S4G157300.t1"; gene_id "Ledus.S4G157300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9569.t1 is derived from g10599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7858828	7863730	.	-	.	Ledus.S3G104600
Ledus.S3	AUGUSTUS	transcript	7858828	7863730	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	stop_codon	7858825	7858827	.	-	0	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7858828	7859142	0.98	-	0	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7858828	7859142	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7859143	7859261	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7859262	7859434	0.95	-	2	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7859262	7859434	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7859435	7859604	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7859605	7859764	0.99	-	0	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7859605	7859764	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7859765	7859885	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7859886	7859935	1	-	2	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7859886	7859935	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7859936	7860027	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7860028	7860102	1	-	2	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7860028	7860102	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7860103	7860190	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7860191	7860296	0.99	-	0	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7860191	7860296	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7860297	7860399	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7860400	7860540	0.99	-	0	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7860400	7860540	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7860541	7860691	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7860692	7860783	0.43	-	2	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7860692	7860783	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7860784	7860952	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7860953	7860997	0.5	-	2	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7860953	7860997	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7860998	7861124	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7861125	7861213	0.98	-	1	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7861125	7861213	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7861214	7861373	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7861374	7861660	1	-	0	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7861374	7861660	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7861661	7861751	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7861752	7861956	1	-	1	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7861752	7861956	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7861957	7862088	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7862089	7862212	1	-	2	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7862089	7862212	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7862213	7862387	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7862388	7862496	1	-	0	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7862388	7862496	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7862497	7862580	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7862581	7862638	1	-	1	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7862581	7862638	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7862639	7862814	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7862815	7862911	1	-	2	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7862815	7862911	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7862912	7863072	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7863073	7863209	1	-	1	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7863073	7863209	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7863210	7863346	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7863347	7863423	1	-	0	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7863347	7863423	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7863424	7863508	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7863509	7863560	0.74	-	1	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7863509	7863560	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	intron	7863561	7863683	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	CDS	7863684	7863730	0.63	-	0	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	exon	7863684	7863730	.	-	.	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
Ledus.S3	AUGUSTUS	start_codon	7863728	7863730	.	-	0	transcript_id "Ledus.S3G104600.t1"; gene_id "Ledus.S3G104600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4849.t1 is derived from g2287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20193611	20195051	.	-	.	Ledus.S1G227000
Ledus.S1	AUGUSTUS	transcript	20193611	20195051	.	-	.	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	stop_codon	20193608	20193610	.	-	0	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	CDS	20193611	20193663	0.39	-	2	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	exon	20193611	20193663	.	-	.	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	intron	20193664	20193802	.	-	.	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	CDS	20193803	20193952	0.65	-	2	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	exon	20193803	20193952	.	-	.	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	intron	20193953	20194049	.	-	.	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	CDS	20194050	20194272	1	-	0	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	exon	20194050	20194272	.	-	.	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	intron	20194273	20194368	.	-	.	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	CDS	20194369	20194538	1	-	2	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	exon	20194369	20194538	.	-	.	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	intron	20194539	20194626	.	-	.	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	CDS	20194627	20194786	1	-	0	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	exon	20194627	20194786	.	-	.	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	intron	20194787	20194865	.	-	.	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	CDS	20194866	20195051	0.96	-	0	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	exon	20194866	20195051	.	-	.	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
Ledus.S1	AUGUSTUS	start_codon	20195049	20195051	.	-	0	transcript_id "Ledus.S1G227000.t1"; gene_id "Ledus.S1G227000"
# This transcript jg11264.t2 is derived from g4882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11265.t1 is derived from g4883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3084350	3085849	.	-	.	Ledus.S4G042100
Ledus.S4	AUGUSTUS	transcript	3084350	3085849	.	-	.	transcript_id "Ledus.S4G042100.t1"; gene_id "Ledus.S4G042100"
Ledus.S4	AUGUSTUS	stop_codon	3084347	3084349	.	-	0	transcript_id "Ledus.S4G042100.t1"; gene_id "Ledus.S4G042100"
Ledus.S4	AUGUSTUS	CDS	3084350	3085496	0.98	-	1	transcript_id "Ledus.S4G042100.t1"; gene_id "Ledus.S4G042100"
Ledus.S4	AUGUSTUS	exon	3084350	3085496	.	-	.	transcript_id "Ledus.S4G042100.t1"; gene_id "Ledus.S4G042100"
Ledus.S4	AUGUSTUS	intron	3085497	3085589	.	-	.	transcript_id "Ledus.S4G042100.t1"; gene_id "Ledus.S4G042100"
Ledus.S4	AUGUSTUS	CDS	3085590	3085849	0.95	-	0	transcript_id "Ledus.S4G042100.t1"; gene_id "Ledus.S4G042100"
Ledus.S4	AUGUSTUS	exon	3085590	3085849	.	-	.	transcript_id "Ledus.S4G042100.t1"; gene_id "Ledus.S4G042100"
Ledus.S4	AUGUSTUS	start_codon	3085847	3085849	.	-	0	transcript_id "Ledus.S4G042100.t1"; gene_id "Ledus.S4G042100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10449.t1 is derived from g11479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15210648	15212439	.	+	.	Ledus.S3G192600
Ledus.S3	AUGUSTUS	transcript	15210648	15212439	.	+	.	transcript_id "Ledus.S3G192600.t1"; gene_id "Ledus.S3G192600"
Ledus.S3	AUGUSTUS	start_codon	15210648	15210650	.	+	0	transcript_id "Ledus.S3G192600.t1"; gene_id "Ledus.S3G192600"
Ledus.S3	AUGUSTUS	CDS	15210648	15211364	0.89	+	0	transcript_id "Ledus.S3G192600.t1"; gene_id "Ledus.S3G192600"
Ledus.S3	AUGUSTUS	exon	15210648	15211364	.	+	.	transcript_id "Ledus.S3G192600.t1"; gene_id "Ledus.S3G192600"
Ledus.S3	AUGUSTUS	intron	15211365	15211598	.	+	.	transcript_id "Ledus.S3G192600.t1"; gene_id "Ledus.S3G192600"
Ledus.S3	AUGUSTUS	CDS	15211599	15212135	1	+	0	transcript_id "Ledus.S3G192600.t1"; gene_id "Ledus.S3G192600"
Ledus.S3	AUGUSTUS	exon	15211599	15212135	.	+	.	transcript_id "Ledus.S3G192600.t1"; gene_id "Ledus.S3G192600"
Ledus.S3	AUGUSTUS	intron	15212136	15212232	.	+	.	transcript_id "Ledus.S3G192600.t1"; gene_id "Ledus.S3G192600"
Ledus.S3	AUGUSTUS	CDS	15212233	15212439	1	+	0	transcript_id "Ledus.S3G192600.t1"; gene_id "Ledus.S3G192600"
Ledus.S3	AUGUSTUS	exon	15212233	15212439	.	+	.	transcript_id "Ledus.S3G192600.t1"; gene_id "Ledus.S3G192600"
Ledus.S3	AUGUSTUS	stop_codon	15212440	15212442	.	+	0	transcript_id "Ledus.S3G192600.t1"; gene_id "Ledus.S3G192600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2530.t1 is derived from g9393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18626803	18629587	.	-	.	Ledus.S2G241200
Ledus.S2	AUGUSTUS	transcript	18626803	18629587	.	-	.	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	stop_codon	18626800	18626802	.	-	0	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	CDS	18626803	18627006	1	-	0	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	exon	18626803	18627006	.	-	.	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	intron	18627007	18627113	.	-	.	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	CDS	18627114	18627179	1	-	0	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	exon	18627114	18627179	.	-	.	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	intron	18627180	18627270	.	-	.	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	CDS	18627271	18627336	1	-	0	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	exon	18627271	18627336	.	-	.	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	intron	18627337	18627425	.	-	.	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	CDS	18627426	18627590	1	-	0	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	exon	18627426	18627590	.	-	.	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	intron	18627591	18627688	.	-	.	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	CDS	18627689	18629587	0.54	-	0	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	exon	18627689	18629587	.	-	.	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
Ledus.S2	AUGUSTUS	start_codon	18629585	18629587	.	-	0	transcript_id "Ledus.S2G241200.t1"; gene_id "Ledus.S2G241200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2330.t1 is derived from g9193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17214630	17216045	.	-	.	Ledus.S2G221200
Ledus.S2	AUGUSTUS	transcript	17214630	17216045	.	-	.	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	stop_codon	17214627	17214629	.	-	0	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	CDS	17214630	17214875	1	-	0	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	exon	17214630	17214875	.	-	.	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	intron	17214876	17214980	.	-	.	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	CDS	17214981	17215302	0.97	-	1	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	exon	17214981	17215302	.	-	.	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	intron	17215303	17215428	.	-	.	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	CDS	17215429	17215520	1	-	0	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	exon	17215429	17215520	.	-	.	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	intron	17215521	17215622	.	-	.	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	CDS	17215623	17216045	0.72	-	0	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	exon	17215623	17216045	.	-	.	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
Ledus.S2	AUGUSTUS	start_codon	17216043	17216045	.	-	0	transcript_id "Ledus.S2G221200.t1"; gene_id "Ledus.S2G221200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2097.t1 is derived from g8960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14713415	14713997	.	+	.	Ledus.S2G197900
Ledus.S2	AUGUSTUS	transcript	14713415	14713997	.	+	.	transcript_id "Ledus.S2G197900.t1"; gene_id "Ledus.S2G197900"
Ledus.S2	AUGUSTUS	start_codon	14713415	14713417	.	+	0	transcript_id "Ledus.S2G197900.t1"; gene_id "Ledus.S2G197900"
Ledus.S2	AUGUSTUS	CDS	14713415	14713496	0.96	+	0	transcript_id "Ledus.S2G197900.t1"; gene_id "Ledus.S2G197900"
Ledus.S2	AUGUSTUS	exon	14713415	14713496	.	+	.	transcript_id "Ledus.S2G197900.t1"; gene_id "Ledus.S2G197900"
Ledus.S2	AUGUSTUS	intron	14713497	14713700	.	+	.	transcript_id "Ledus.S2G197900.t1"; gene_id "Ledus.S2G197900"
Ledus.S2	AUGUSTUS	CDS	14713701	14713815	1	+	2	transcript_id "Ledus.S2G197900.t1"; gene_id "Ledus.S2G197900"
Ledus.S2	AUGUSTUS	exon	14713701	14713815	.	+	.	transcript_id "Ledus.S2G197900.t1"; gene_id "Ledus.S2G197900"
Ledus.S2	AUGUSTUS	intron	14713816	14713951	.	+	.	transcript_id "Ledus.S2G197900.t1"; gene_id "Ledus.S2G197900"
Ledus.S2	AUGUSTUS	CDS	14713952	14713997	0.64	+	1	transcript_id "Ledus.S2G197900.t1"; gene_id "Ledus.S2G197900"
Ledus.S2	AUGUSTUS	exon	14713952	14713997	.	+	.	transcript_id "Ledus.S2G197900.t1"; gene_id "Ledus.S2G197900"
Ledus.S2	AUGUSTUS	stop_codon	14713998	14714000	.	+	0	transcript_id "Ledus.S2G197900.t1"; gene_id "Ledus.S2G197900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10542.t1 is derived from g11572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16042841	16043147	.	+	.	Ledus.S3G201900
Ledus.S3	AUGUSTUS	transcript	16042841	16043147	.	+	.	transcript_id "Ledus.S3G201900.t1"; gene_id "Ledus.S3G201900"
Ledus.S3	AUGUSTUS	start_codon	16042841	16042843	.	+	0	transcript_id "Ledus.S3G201900.t1"; gene_id "Ledus.S3G201900"
Ledus.S3	AUGUSTUS	CDS	16042841	16042979	0.83	+	0	transcript_id "Ledus.S3G201900.t1"; gene_id "Ledus.S3G201900"
Ledus.S3	AUGUSTUS	exon	16042841	16042979	.	+	.	transcript_id "Ledus.S3G201900.t1"; gene_id "Ledus.S3G201900"
Ledus.S3	AUGUSTUS	intron	16042980	16043082	.	+	.	transcript_id "Ledus.S3G201900.t1"; gene_id "Ledus.S3G201900"
Ledus.S3	AUGUSTUS	CDS	16043083	16043147	0.81	+	2	transcript_id "Ledus.S3G201900.t1"; gene_id "Ledus.S3G201900"
Ledus.S3	AUGUSTUS	exon	16043083	16043147	.	+	.	transcript_id "Ledus.S3G201900.t1"; gene_id "Ledus.S3G201900"
Ledus.S3	AUGUSTUS	stop_codon	16043148	16043150	.	+	0	transcript_id "Ledus.S3G201900.t1"; gene_id "Ledus.S3G201900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg923.t1 is derived from g7784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6180077	6180930	.	-	.	Ledus.S2G080500
Ledus.S2	AUGUSTUS	transcript	6180077	6180930	.	-	.	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	stop_codon	6180074	6180076	.	-	0	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	CDS	6180077	6180149	0.94	-	1	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	exon	6180077	6180149	.	-	.	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	intron	6180150	6180354	.	-	.	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	CDS	6180355	6180437	0.85	-	0	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	exon	6180355	6180437	.	-	.	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	intron	6180438	6180647	.	-	.	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	CDS	6180648	6180719	0.37	-	0	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	exon	6180648	6180719	.	-	.	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	intron	6180720	6180900	.	-	.	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	CDS	6180901	6180930	0.74	-	0	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	exon	6180901	6180930	.	-	.	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
Ledus.S2	AUGUSTUS	start_codon	6180928	6180930	.	-	0	transcript_id "Ledus.S2G080500.t1"; gene_id "Ledus.S2G080500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6657.t1 is derived from g4100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32940954	32941940	.	-	.	Ledus.S1G407800
Ledus.S1	AUGUSTUS	transcript	32940954	32941940	.	-	.	transcript_id "Ledus.S1G407800.t1"; gene_id "Ledus.S1G407800"
Ledus.S1	AUGUSTUS	stop_codon	32940951	32940953	.	-	0	transcript_id "Ledus.S1G407800.t1"; gene_id "Ledus.S1G407800"
Ledus.S1	AUGUSTUS	CDS	32940954	32941940	0.76	-	0	transcript_id "Ledus.S1G407800.t1"; gene_id "Ledus.S1G407800"
Ledus.S1	AUGUSTUS	exon	32940954	32941940	.	-	.	transcript_id "Ledus.S1G407800.t1"; gene_id "Ledus.S1G407800"
Ledus.S1	AUGUSTUS	start_codon	32941938	32941940	.	-	0	transcript_id "Ledus.S1G407800.t1"; gene_id "Ledus.S1G407800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg961.t1 is derived from g7822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6348806	6349467	.	+	.	Ledus.S2G084300
Ledus.S2	AUGUSTUS	transcript	6348806	6349467	.	+	.	transcript_id "Ledus.S2G084300.t1"; gene_id "Ledus.S2G084300"
Ledus.S2	AUGUSTUS	start_codon	6348806	6348808	.	+	0	transcript_id "Ledus.S2G084300.t1"; gene_id "Ledus.S2G084300"
Ledus.S2	AUGUSTUS	CDS	6348806	6349068	0.37	+	0	transcript_id "Ledus.S2G084300.t1"; gene_id "Ledus.S2G084300"
Ledus.S2	AUGUSTUS	exon	6348806	6349068	.	+	.	transcript_id "Ledus.S2G084300.t1"; gene_id "Ledus.S2G084300"
Ledus.S2	AUGUSTUS	intron	6349069	6349352	.	+	.	transcript_id "Ledus.S2G084300.t1"; gene_id "Ledus.S2G084300"
Ledus.S2	AUGUSTUS	CDS	6349353	6349467	0.91	+	1	transcript_id "Ledus.S2G084300.t1"; gene_id "Ledus.S2G084300"
Ledus.S2	AUGUSTUS	exon	6349353	6349467	.	+	.	transcript_id "Ledus.S2G084300.t1"; gene_id "Ledus.S2G084300"
Ledus.S2	AUGUSTUS	stop_codon	6349468	6349470	.	+	0	transcript_id "Ledus.S2G084300.t1"; gene_id "Ledus.S2G084300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7322.t1 is derived from g11993.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1169817	1172208	.	-	.	Ledus.S5G010000
Ledus.S5	AUGUSTUS	transcript	1169817	1172208	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	stop_codon	1169814	1169816	.	-	0	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	CDS	1169817	1169874	0.98	-	1	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	exon	1169817	1169874	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	intron	1169875	1169971	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	CDS	1169972	1170036	1	-	0	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	exon	1169972	1170036	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	intron	1170037	1170150	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	CDS	1170151	1170201	0.98	-	0	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	exon	1170151	1170201	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	intron	1170202	1170309	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	CDS	1170310	1170375	0.94	-	0	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	exon	1170310	1170375	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	intron	1170376	1170502	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	CDS	1170503	1170570	1	-	2	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	exon	1170503	1170570	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	intron	1170571	1170657	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	CDS	1170658	1170748	1	-	0	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	exon	1170658	1170748	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	intron	1170749	1170847	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	CDS	1170848	1170913	1	-	0	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	exon	1170848	1170913	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	intron	1170914	1171074	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	CDS	1171075	1171170	1	-	0	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	exon	1171075	1171170	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	intron	1171171	1171311	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	CDS	1171312	1171410	1	-	0	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	exon	1171312	1171410	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	intron	1171411	1171560	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	CDS	1171561	1171647	1	-	0	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	exon	1171561	1171647	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	intron	1171648	1171741	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	CDS	1171742	1171804	1	-	0	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	exon	1171742	1171804	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	intron	1171805	1171947	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	CDS	1171948	1172208	0.97	-	0	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	exon	1171948	1172208	.	-	.	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
Ledus.S5	AUGUSTUS	start_codon	1172206	1172208	.	-	0	transcript_id "Ledus.S5G010000.t1"; gene_id "Ledus.S5G010000"
# This transcript jg10221.t2 is derived from g11251.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10221.t3 is derived from g11251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10221.t4 is derived from g11251.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10222.t1 is derived from g11252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13646324	13648412	.	+	.	Ledus.S3G169900
Ledus.S3	AUGUSTUS	transcript	13646324	13648412	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	start_codon	13646324	13646326	.	+	0	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	CDS	13646324	13646917	0.96	+	0	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	exon	13646324	13646917	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	intron	13646918	13647013	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	CDS	13647014	13647046	1	+	0	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	exon	13647014	13647046	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	intron	13647047	13647181	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	CDS	13647182	13647272	1	+	0	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	exon	13647182	13647272	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	intron	13647273	13647431	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	CDS	13647432	13647695	0.37	+	2	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	exon	13647432	13647695	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	intron	13647696	13647803	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	CDS	13647804	13647986	0.39	+	2	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	exon	13647804	13647986	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	intron	13647987	13648096	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	CDS	13648097	13648200	0.69	+	2	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	exon	13648097	13648200	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	intron	13648201	13648331	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	CDS	13648332	13648412	0.95	+	0	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	exon	13648332	13648412	.	+	.	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
Ledus.S3	AUGUSTUS	stop_codon	13648413	13648415	.	+	0	transcript_id "Ledus.S3G169900.t1"; gene_id "Ledus.S3G169900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12017.t1 is derived from g5636.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8724145	8726167	.	-	.	Ledus.S4G117300
Ledus.S4	AUGUSTUS	transcript	8724145	8726167	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	stop_codon	8724142	8724144	.	-	0	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8724145	8724216	1	-	0	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8724145	8724216	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8724217	8724303	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8724304	8724345	1	-	0	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8724304	8724345	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8724346	8724487	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8724488	8724592	1	-	0	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8724488	8724592	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8724593	8724721	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8724722	8724769	1	-	0	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8724722	8724769	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8724770	8725006	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8725007	8725117	1	-	0	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8725007	8725117	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8725118	8725203	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8725204	8725323	1	-	0	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8725204	8725323	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8725324	8725408	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8725409	8725444	1	-	0	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8725409	8725444	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8725445	8725660	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8725661	8725772	0.89	-	1	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8725661	8725772	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8725773	8725898	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8725899	8726167	0.25	-	0	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8725899	8726167	.	-	.	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	start_codon	8726165	8726167	.	-	0	transcript_id "Ledus.S4G117300.t1"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	transcript	8724145	8726167	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	stop_codon	8724142	8724144	.	-	0	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8724145	8724216	1	-	0	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8724145	8724216	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8724217	8724303	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8724304	8724345	1	-	0	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8724304	8724345	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8724346	8724487	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8724488	8724592	1	-	0	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8724488	8724592	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8724593	8724721	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8724722	8724769	1	-	0	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8724722	8724769	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8724770	8725006	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8725007	8725117	1	-	0	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8725007	8725117	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8725118	8725203	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8725204	8725323	1	-	0	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8725204	8725323	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8725324	8725408	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8725409	8725514	0.9	-	1	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8725409	8725514	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8725515	8725576	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8725577	8725594	0.85	-	1	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8725577	8725594	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8725595	8725746	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8725747	8725836	0.31	-	1	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8725747	8725836	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	intron	8725837	8725898	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	CDS	8725899	8726167	0.15	-	0	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	exon	8725899	8726167	.	-	.	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
Ledus.S4	AUGUSTUS	start_codon	8726165	8726167	.	-	0	transcript_id "Ledus.S4G117300.t2"; gene_id "Ledus.S4G117300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11325.t1 is derived from g4943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3590679	3591158	.	-	.	Ledus.S4G048100
Ledus.S4	AUGUSTUS	transcript	3590679	3591158	.	-	.	transcript_id "Ledus.S4G048100.t1"; gene_id "Ledus.S4G048100"
Ledus.S4	AUGUSTUS	stop_codon	3590676	3590678	.	-	0	transcript_id "Ledus.S4G048100.t1"; gene_id "Ledus.S4G048100"
Ledus.S4	AUGUSTUS	CDS	3590679	3591158	0.96	-	0	transcript_id "Ledus.S4G048100.t1"; gene_id "Ledus.S4G048100"
Ledus.S4	AUGUSTUS	exon	3590679	3591158	.	-	.	transcript_id "Ledus.S4G048100.t1"; gene_id "Ledus.S4G048100"
Ledus.S4	AUGUSTUS	start_codon	3591156	3591158	.	-	0	transcript_id "Ledus.S4G048100.t1"; gene_id "Ledus.S4G048100"
# This transcript jg3992.t2 is derived from g1428.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3993.t1 is derived from g1429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13942179	13942957	.	+	.	Ledus.S1G141400
Ledus.S1	AUGUSTUS	transcript	13942179	13942957	.	+	.	transcript_id "Ledus.S1G141400.t1"; gene_id "Ledus.S1G141400"
Ledus.S1	AUGUSTUS	start_codon	13942179	13942181	.	+	0	transcript_id "Ledus.S1G141400.t1"; gene_id "Ledus.S1G141400"
Ledus.S1	AUGUSTUS	CDS	13942179	13942318	0.57	+	0	transcript_id "Ledus.S1G141400.t1"; gene_id "Ledus.S1G141400"
Ledus.S1	AUGUSTUS	exon	13942179	13942318	.	+	.	transcript_id "Ledus.S1G141400.t1"; gene_id "Ledus.S1G141400"
Ledus.S1	AUGUSTUS	intron	13942319	13942416	.	+	.	transcript_id "Ledus.S1G141400.t1"; gene_id "Ledus.S1G141400"
Ledus.S1	AUGUSTUS	CDS	13942417	13942575	0.69	+	1	transcript_id "Ledus.S1G141400.t1"; gene_id "Ledus.S1G141400"
Ledus.S1	AUGUSTUS	exon	13942417	13942575	.	+	.	transcript_id "Ledus.S1G141400.t1"; gene_id "Ledus.S1G141400"
Ledus.S1	AUGUSTUS	intron	13942576	13942722	.	+	.	transcript_id "Ledus.S1G141400.t1"; gene_id "Ledus.S1G141400"
Ledus.S1	AUGUSTUS	CDS	13942723	13942957	0.99	+	1	transcript_id "Ledus.S1G141400.t1"; gene_id "Ledus.S1G141400"
Ledus.S1	AUGUSTUS	exon	13942723	13942957	.	+	.	transcript_id "Ledus.S1G141400.t1"; gene_id "Ledus.S1G141400"
Ledus.S1	AUGUSTUS	stop_codon	13942958	13942960	.	+	0	transcript_id "Ledus.S1G141400.t1"; gene_id "Ledus.S1G141400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7245.t1 is derived from g11916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	264935	266079	.	-	.	Ledus.S5G002300
Ledus.S5	AUGUSTUS	transcript	264935	266079	.	-	.	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	stop_codon	264932	264934	.	-	0	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	CDS	264935	265003	1	-	0	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	exon	264935	265003	.	-	.	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	intron	265004	265083	.	-	.	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	CDS	265084	265179	1	-	0	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	exon	265084	265179	.	-	.	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	intron	265180	265278	.	-	.	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	CDS	265279	265362	1	-	0	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	exon	265279	265362	.	-	.	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	intron	265363	265483	.	-	.	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	CDS	265484	265584	1	-	2	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	exon	265484	265584	.	-	.	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	intron	265585	265682	.	-	.	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	CDS	265683	266079	0.68	-	0	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	exon	265683	266079	.	-	.	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
Ledus.S5	AUGUSTUS	start_codon	266077	266079	.	-	0	transcript_id "Ledus.S5G002300.t1"; gene_id "Ledus.S5G002300"
# This transcript jg4974.t2 is derived from g2412.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4975.t1 is derived from g2413.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20943752	20944099	.	-	.	Ledus.S1G239600
Ledus.S1	AUGUSTUS	transcript	20943752	20944099	.	-	.	transcript_id "Ledus.S1G239600.t1"; gene_id "Ledus.S1G239600"
Ledus.S1	AUGUSTUS	stop_codon	20943749	20943751	.	-	0	transcript_id "Ledus.S1G239600.t1"; gene_id "Ledus.S1G239600"
Ledus.S1	AUGUSTUS	CDS	20943752	20944099	0.88	-	0	transcript_id "Ledus.S1G239600.t1"; gene_id "Ledus.S1G239600"
Ledus.S1	AUGUSTUS	exon	20943752	20944099	.	-	.	transcript_id "Ledus.S1G239600.t1"; gene_id "Ledus.S1G239600"
Ledus.S1	AUGUSTUS	start_codon	20944097	20944099	.	-	0	transcript_id "Ledus.S1G239600.t1"; gene_id "Ledus.S1G239600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1310.t1 is derived from g8171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9214181	9214759	.	+	.	Ledus.S2G119200
Ledus.S2	AUGUSTUS	transcript	9214181	9214759	.	+	.	transcript_id "Ledus.S2G119200.t1"; gene_id "Ledus.S2G119200"
Ledus.S2	AUGUSTUS	start_codon	9214181	9214183	.	+	0	transcript_id "Ledus.S2G119200.t1"; gene_id "Ledus.S2G119200"
Ledus.S2	AUGUSTUS	CDS	9214181	9214759	0.99	+	0	transcript_id "Ledus.S2G119200.t1"; gene_id "Ledus.S2G119200"
Ledus.S2	AUGUSTUS	exon	9214181	9214759	.	+	.	transcript_id "Ledus.S2G119200.t1"; gene_id "Ledus.S2G119200"
Ledus.S2	AUGUSTUS	stop_codon	9214760	9214762	.	+	0	transcript_id "Ledus.S2G119200.t1"; gene_id "Ledus.S2G119200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11603.t1 is derived from g5221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5475363	5476256	.	+	.	Ledus.S4G075900
Ledus.S4	AUGUSTUS	transcript	5475363	5476256	.	+	.	transcript_id "Ledus.S4G075900.t1"; gene_id "Ledus.S4G075900"
Ledus.S4	AUGUSTUS	start_codon	5475363	5475365	.	+	0	transcript_id "Ledus.S4G075900.t1"; gene_id "Ledus.S4G075900"
Ledus.S4	AUGUSTUS	CDS	5475363	5476256	0.58	+	0	transcript_id "Ledus.S4G075900.t1"; gene_id "Ledus.S4G075900"
Ledus.S4	AUGUSTUS	exon	5475363	5476256	.	+	.	transcript_id "Ledus.S4G075900.t1"; gene_id "Ledus.S4G075900"
Ledus.S4	AUGUSTUS	stop_codon	5476257	5476259	.	+	0	transcript_id "Ledus.S4G075900.t1"; gene_id "Ledus.S4G075900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5845.t1 is derived from g3287.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27261491	27262538	.	+	.	Ledus.S1G326600
Ledus.S1	AUGUSTUS	transcript	27261491	27262538	.	+	.	transcript_id "Ledus.S1G326600.t1"; gene_id "Ledus.S1G326600"
Ledus.S1	AUGUSTUS	start_codon	27261491	27261493	.	+	0	transcript_id "Ledus.S1G326600.t1"; gene_id "Ledus.S1G326600"
Ledus.S1	AUGUSTUS	CDS	27261491	27261850	0.71	+	0	transcript_id "Ledus.S1G326600.t1"; gene_id "Ledus.S1G326600"
Ledus.S1	AUGUSTUS	exon	27261491	27261850	.	+	.	transcript_id "Ledus.S1G326600.t1"; gene_id "Ledus.S1G326600"
Ledus.S1	AUGUSTUS	intron	27261851	27261943	.	+	.	transcript_id "Ledus.S1G326600.t1"; gene_id "Ledus.S1G326600"
Ledus.S1	AUGUSTUS	CDS	27261944	27262163	0.99	+	0	transcript_id "Ledus.S1G326600.t1"; gene_id "Ledus.S1G326600"
Ledus.S1	AUGUSTUS	exon	27261944	27262163	.	+	.	transcript_id "Ledus.S1G326600.t1"; gene_id "Ledus.S1G326600"
Ledus.S1	AUGUSTUS	intron	27262164	27262242	.	+	.	transcript_id "Ledus.S1G326600.t1"; gene_id "Ledus.S1G326600"
Ledus.S1	AUGUSTUS	CDS	27262243	27262538	1	+	2	transcript_id "Ledus.S1G326600.t1"; gene_id "Ledus.S1G326600"
Ledus.S1	AUGUSTUS	exon	27262243	27262538	.	+	.	transcript_id "Ledus.S1G326600.t1"; gene_id "Ledus.S1G326600"
Ledus.S1	AUGUSTUS	stop_codon	27262539	27262541	.	+	0	transcript_id "Ledus.S1G326600.t1"; gene_id "Ledus.S1G326600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8292.t1 is derived from g12963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10532586	10536178	.	+	.	Ledus.S5G107000
Ledus.S5	AUGUSTUS	transcript	10532586	10536178	.	+	.	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	start_codon	10532586	10532588	.	+	0	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	CDS	10532586	10532852	0.66	+	0	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	exon	10532586	10532852	.	+	.	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	intron	10532853	10532922	.	+	.	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	CDS	10532923	10533025	1	+	0	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	exon	10532923	10533025	.	+	.	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	intron	10533026	10533114	.	+	.	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	CDS	10533115	10533218	1	+	2	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	exon	10533115	10533218	.	+	.	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	intron	10533219	10533295	.	+	.	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	CDS	10533296	10536178	0.95	+	0	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	exon	10533296	10536178	.	+	.	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
Ledus.S5	AUGUSTUS	stop_codon	10536179	10536181	.	+	0	transcript_id "Ledus.S5G107000.t1"; gene_id "Ledus.S5G107000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3447.t1 is derived from g882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8412739	8413782	.	+	.	Ledus.S1G086800
Ledus.S1	AUGUSTUS	transcript	8412739	8413782	.	+	.	transcript_id "Ledus.S1G086800.t1"; gene_id "Ledus.S1G086800"
Ledus.S1	AUGUSTUS	start_codon	8412739	8412741	.	+	0	transcript_id "Ledus.S1G086800.t1"; gene_id "Ledus.S1G086800"
Ledus.S1	AUGUSTUS	CDS	8412739	8413782	0.44	+	0	transcript_id "Ledus.S1G086800.t1"; gene_id "Ledus.S1G086800"
Ledus.S1	AUGUSTUS	exon	8412739	8413782	.	+	.	transcript_id "Ledus.S1G086800.t1"; gene_id "Ledus.S1G086800"
Ledus.S1	AUGUSTUS	stop_codon	8413783	8413785	.	+	0	transcript_id "Ledus.S1G086800.t1"; gene_id "Ledus.S1G086800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg161.t1 is derived from g7022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	408646	412180	.	-	.	Ledus.S2G004300
Ledus.S2	AUGUSTUS	transcript	408646	412180	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	stop_codon	408643	408645	.	-	0	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	CDS	408646	408883	0.93	-	1	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	exon	408646	408883	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	intron	408884	408963	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	CDS	408964	409164	1	-	1	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	exon	408964	409164	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	intron	409165	409333	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	CDS	409334	409569	1	-	0	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	exon	409334	409569	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	intron	409570	409656	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	CDS	409657	409777	1	-	1	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	exon	409657	409777	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	intron	409778	409999	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	CDS	410000	410040	1	-	0	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	exon	410000	410040	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	intron	410041	410123	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	CDS	410124	410232	1	-	1	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	exon	410124	410232	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	intron	410233	410326	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	CDS	410327	410532	1	-	0	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	exon	410327	410532	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	intron	410533	410644	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	CDS	410645	410759	1	-	1	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	exon	410645	410759	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	intron	410760	410873	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	CDS	410874	410968	1	-	0	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	exon	410874	410968	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	intron	410969	411155	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	CDS	411156	411415	1	-	2	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	exon	411156	411415	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	intron	411416	411582	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	CDS	411583	411703	1	-	0	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	exon	411583	411703	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	intron	411704	412039	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	CDS	412040	412180	0.51	-	0	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	exon	412040	412180	.	-	.	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
Ledus.S2	AUGUSTUS	start_codon	412178	412180	.	-	0	transcript_id "Ledus.S2G004300.t1"; gene_id "Ledus.S2G004300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12376.t1 is derived from g5997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11490118	11490747	.	+	.	Ledus.S4G153200
Ledus.S4	AUGUSTUS	transcript	11490118	11490747	.	+	.	transcript_id "Ledus.S4G153200.t1"; gene_id "Ledus.S4G153200"
Ledus.S4	AUGUSTUS	start_codon	11490118	11490120	.	+	0	transcript_id "Ledus.S4G153200.t1"; gene_id "Ledus.S4G153200"
Ledus.S4	AUGUSTUS	CDS	11490118	11490747	0.81	+	0	transcript_id "Ledus.S4G153200.t1"; gene_id "Ledus.S4G153200"
Ledus.S4	AUGUSTUS	exon	11490118	11490747	.	+	.	transcript_id "Ledus.S4G153200.t1"; gene_id "Ledus.S4G153200"
Ledus.S4	AUGUSTUS	stop_codon	11490748	11490750	.	+	0	transcript_id "Ledus.S4G153200.t1"; gene_id "Ledus.S4G153200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7823.t1 is derived from g12494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7241969	7242367	.	+	.	Ledus.S5G060100
Ledus.S5	AUGUSTUS	transcript	7241969	7242367	.	+	.	transcript_id "Ledus.S5G060100.t1"; gene_id "Ledus.S5G060100"
Ledus.S5	AUGUSTUS	start_codon	7241969	7241971	.	+	0	transcript_id "Ledus.S5G060100.t1"; gene_id "Ledus.S5G060100"
Ledus.S5	AUGUSTUS	CDS	7241969	7242167	0.33	+	0	transcript_id "Ledus.S5G060100.t1"; gene_id "Ledus.S5G060100"
Ledus.S5	AUGUSTUS	exon	7241969	7242167	.	+	.	transcript_id "Ledus.S5G060100.t1"; gene_id "Ledus.S5G060100"
Ledus.S5	AUGUSTUS	intron	7242168	7242256	.	+	.	transcript_id "Ledus.S5G060100.t1"; gene_id "Ledus.S5G060100"
Ledus.S5	AUGUSTUS	CDS	7242257	7242279	1	+	2	transcript_id "Ledus.S5G060100.t1"; gene_id "Ledus.S5G060100"
Ledus.S5	AUGUSTUS	exon	7242257	7242279	.	+	.	transcript_id "Ledus.S5G060100.t1"; gene_id "Ledus.S5G060100"
Ledus.S5	AUGUSTUS	intron	7242280	7242364	.	+	.	transcript_id "Ledus.S5G060100.t1"; gene_id "Ledus.S5G060100"
Ledus.S5	AUGUSTUS	CDS	7242365	7242367	1	+	0	transcript_id "Ledus.S5G060100.t1"; gene_id "Ledus.S5G060100"
Ledus.S5	AUGUSTUS	exon	7242365	7242367	.	+	.	transcript_id "Ledus.S5G060100.t1"; gene_id "Ledus.S5G060100"
Ledus.S5	AUGUSTUS	stop_codon	7242368	7242370	.	+	0	transcript_id "Ledus.S5G060100.t1"; gene_id "Ledus.S5G060100"
# This transcript jg416.t2 is derived from g7277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg417.t1 is derived from g7278.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2338612	2340363	.	-	.	Ledus.S2G029900
Ledus.S2	AUGUSTUS	transcript	2338612	2340363	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	stop_codon	2338609	2338611	.	-	0	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	CDS	2338612	2338671	0.42	-	0	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	exon	2338612	2338671	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	intron	2338672	2338763	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	CDS	2338764	2338815	0.42	-	1	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	exon	2338764	2338815	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	intron	2338816	2338923	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	CDS	2338924	2339021	0.42	-	0	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	exon	2338924	2339021	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	intron	2339022	2339108	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	CDS	2339109	2339151	1	-	1	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	exon	2339109	2339151	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	intron	2339152	2339248	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	CDS	2339249	2339325	1	-	0	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	exon	2339249	2339325	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	intron	2339326	2339472	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	CDS	2339473	2339817	0.99	-	0	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	exon	2339473	2339817	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	intron	2339818	2339904	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	CDS	2339905	2339984	1	-	2	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	exon	2339905	2339984	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	intron	2339985	2340076	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	CDS	2340077	2340179	1	-	0	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	exon	2340077	2340179	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	intron	2340180	2340285	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	CDS	2340286	2340363	0.69	-	0	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	exon	2340286	2340363	.	-	.	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
Ledus.S2	AUGUSTUS	start_codon	2340361	2340363	.	-	0	transcript_id "Ledus.S2G029900.t1"; gene_id "Ledus.S2G029900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7152.t1 is derived from g6683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1811404	1813741	.	+	.	Ledus.C7G021300
Ledus.C7	AUGUSTUS	transcript	1811404	1813741	.	+	.	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	start_codon	1811404	1811406	.	+	0	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	CDS	1811404	1811761	0.98	+	0	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	exon	1811404	1811761	.	+	.	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	intron	1811762	1811859	.	+	.	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	CDS	1811860	1812179	1	+	2	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	exon	1811860	1812179	.	+	.	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	intron	1812180	1812298	.	+	.	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	CDS	1812299	1812472	1	+	0	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	exon	1812299	1812472	.	+	.	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	intron	1812473	1812562	.	+	.	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	CDS	1812563	1812747	1	+	0	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	exon	1812563	1812747	.	+	.	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	intron	1812748	1812845	.	+	.	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	CDS	1812846	1813386	0.99	+	1	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	exon	1812846	1813386	.	+	.	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	intron	1813387	1813738	.	+	.	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	CDS	1813739	1813741	0.99	+	0	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	exon	1813739	1813741	.	+	.	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
Ledus.C7	AUGUSTUS	stop_codon	1813742	1813744	.	+	0	transcript_id "Ledus.C7G021300.t1"; gene_id "Ledus.C7G021300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12444.t1 is derived from g6065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12028823	12033714	.	+	.	Ledus.S4G160000
Ledus.S4	AUGUSTUS	transcript	12028941	12033714	.	+	.	transcript_id "Ledus.S4G160000.t1"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	start_codon	12028941	12028943	.	+	0	transcript_id "Ledus.S4G160000.t1"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	CDS	12028941	12029054	1	+	0	transcript_id "Ledus.S4G160000.t1"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	exon	12028941	12029054	.	+	.	transcript_id "Ledus.S4G160000.t1"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	intron	12029055	12029555	.	+	.	transcript_id "Ledus.S4G160000.t1"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	CDS	12029556	12029724	1	+	0	transcript_id "Ledus.S4G160000.t1"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	exon	12029556	12029724	.	+	.	transcript_id "Ledus.S4G160000.t1"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	intron	12029725	12029797	.	+	.	transcript_id "Ledus.S4G160000.t1"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	CDS	12029798	12033714	1	+	2	transcript_id "Ledus.S4G160000.t1"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	exon	12029798	12033714	.	+	.	transcript_id "Ledus.S4G160000.t1"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	stop_codon	12033715	12033717	.	+	0	transcript_id "Ledus.S4G160000.t1"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	transcript	12028823	12033714	.	+	.	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	start_codon	12028823	12028825	.	+	0	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	CDS	12028823	12028902	0.95	+	0	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	exon	12028823	12028902	.	+	.	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	intron	12028903	12029018	.	+	.	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	CDS	12029019	12029054	0.95	+	1	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	exon	12029019	12029054	.	+	.	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	intron	12029055	12029569	.	+	.	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	CDS	12029570	12029724	0.99	+	1	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	exon	12029570	12029724	.	+	.	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	intron	12029725	12029797	.	+	.	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	CDS	12029798	12033714	1	+	2	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	exon	12029798	12033714	.	+	.	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
Ledus.S4	AUGUSTUS	stop_codon	12033715	12033717	.	+	0	transcript_id "Ledus.S4G160000.t2"; gene_id "Ledus.S4G160000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9039.t1 is derived from g10069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4010205	4010771	.	+	.	Ledus.S3G051600
Ledus.S3	AUGUSTUS	transcript	4010205	4010771	.	+	.	transcript_id "Ledus.S3G051600.t1"; gene_id "Ledus.S3G051600"
Ledus.S3	AUGUSTUS	start_codon	4010205	4010207	.	+	0	transcript_id "Ledus.S3G051600.t1"; gene_id "Ledus.S3G051600"
Ledus.S3	AUGUSTUS	CDS	4010205	4010220	0.64	+	0	transcript_id "Ledus.S3G051600.t1"; gene_id "Ledus.S3G051600"
Ledus.S3	AUGUSTUS	exon	4010205	4010220	.	+	.	transcript_id "Ledus.S3G051600.t1"; gene_id "Ledus.S3G051600"
Ledus.S3	AUGUSTUS	intron	4010221	4010508	.	+	.	transcript_id "Ledus.S3G051600.t1"; gene_id "Ledus.S3G051600"
Ledus.S3	AUGUSTUS	CDS	4010509	4010771	0.54	+	2	transcript_id "Ledus.S3G051600.t1"; gene_id "Ledus.S3G051600"
Ledus.S3	AUGUSTUS	exon	4010509	4010771	.	+	.	transcript_id "Ledus.S3G051600.t1"; gene_id "Ledus.S3G051600"
Ledus.S3	AUGUSTUS	stop_codon	4010772	4010774	.	+	0	transcript_id "Ledus.S3G051600.t1"; gene_id "Ledus.S3G051600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9486.t1 is derived from g10516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7318375	7323934	.	-	.	Ledus.S3G096300
Ledus.S3	AUGUSTUS	transcript	7318375	7323934	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	stop_codon	7318372	7318374	.	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7318375	7318470	1	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7318375	7318470	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7318471	7318570	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7318571	7318633	1	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7318571	7318633	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7318634	7318742	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7318743	7318851	1	-	1	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7318743	7318851	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7318852	7318951	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7318952	7318997	1	-	2	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7318952	7318997	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7318998	7319137	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7319138	7319372	1	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7319138	7319372	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7319373	7319463	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7319464	7319542	1	-	1	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7319464	7319542	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7319543	7319632	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7319633	7319811	1	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7319633	7319811	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7319812	7320045	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7320046	7320110	1	-	2	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7320046	7320110	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7320111	7320234	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7320235	7320303	1	-	2	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7320235	7320303	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7320304	7320487	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7320488	7320732	1	-	1	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7320488	7320732	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7320733	7320880	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7320881	7320981	1	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7320881	7320981	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7320982	7321123	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7321124	7321366	0.98	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7321124	7321366	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7321367	7321504	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7321505	7321552	0.96	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7321505	7321552	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7321553	7321659	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7321660	7321884	0.97	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7321660	7321884	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7321885	7321963	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7321964	7322038	1	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7321964	7322038	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7322039	7322189	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7322190	7322306	1	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7322190	7322306	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7322307	7322432	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7322433	7322525	1	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7322433	7322525	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7322526	7322627	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7322628	7322705	0.91	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7322628	7322705	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7322706	7322807	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7322808	7322870	0.99	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7322808	7322870	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7322871	7322952	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7322953	7323024	1	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7322953	7323024	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7323025	7323122	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7323123	7323234	1	-	1	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7323123	7323234	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7323235	7323320	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7323321	7323364	1	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7323321	7323364	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7323365	7323458	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7323459	7323530	1	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7323459	7323530	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	intron	7323531	7323607	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	CDS	7323608	7323934	0.99	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	exon	7323608	7323934	.	-	.	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
Ledus.S3	AUGUSTUS	start_codon	7323932	7323934	.	-	0	transcript_id "Ledus.S3G096300.t1"; gene_id "Ledus.S3G096300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg82.t1 is derived from g9495.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	319057	323059	.	+	.	Ledus.C8G004200
Ledus.C8	AUGUSTUS	transcript	319057	323059	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	start_codon	319057	319059	.	+	0	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	CDS	319057	319145	0.77	+	0	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	exon	319057	319145	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	intron	319146	319336	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	CDS	319337	320216	0.86	+	1	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	exon	319337	320216	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	intron	320217	320340	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	CDS	320341	320859	0.97	+	0	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	exon	320341	320859	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	intron	320860	321087	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	CDS	321088	321339	1	+	0	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	exon	321088	321339	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	intron	321340	321490	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	CDS	321491	321772	1	+	0	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	exon	321491	321772	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	intron	321773	321937	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	CDS	321938	322017	1	+	0	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	exon	321938	322017	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	intron	322018	322239	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	CDS	322240	322366	1	+	1	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	exon	322240	322366	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	intron	322367	322505	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	CDS	322506	322512	0.72	+	0	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	exon	322506	322512	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	intron	322513	322616	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	CDS	322617	322700	0.71	+	2	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	exon	322617	322700	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	intron	322701	322964	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	CDS	322965	323059	0.75	+	2	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	exon	322965	323059	.	+	.	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
Ledus.C8	AUGUSTUS	stop_codon	323060	323062	.	+	0	transcript_id "Ledus.C8G004200.t1"; gene_id "Ledus.C8G004200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1321.t1 is derived from g8182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9247479	9249240	.	+	.	Ledus.S2G120300
Ledus.S2	AUGUSTUS	transcript	9247479	9249240	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	start_codon	9247479	9247481	.	+	0	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	CDS	9247479	9247756	0.98	+	0	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	exon	9247479	9247756	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	intron	9247757	9247848	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	CDS	9247849	9247964	1	+	1	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	exon	9247849	9247964	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	intron	9247965	9248043	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	CDS	9248044	9248093	1	+	2	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	exon	9248044	9248093	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	intron	9248094	9248195	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	CDS	9248196	9248426	1	+	0	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	exon	9248196	9248426	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	intron	9248427	9248525	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	CDS	9248526	9248690	1	+	0	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	exon	9248526	9248690	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	intron	9248691	9248775	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	CDS	9248776	9248871	1	+	0	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	exon	9248776	9248871	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	intron	9248872	9248955	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	CDS	9248956	9248976	1	+	0	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	exon	9248956	9248976	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	intron	9248977	9249072	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	CDS	9249073	9249240	1	+	0	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	exon	9249073	9249240	.	+	.	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
Ledus.S2	AUGUSTUS	stop_codon	9249241	9249243	.	+	0	transcript_id "Ledus.S2G120300.t1"; gene_id "Ledus.S2G120300"
# This transcript jg3906.t2 is derived from g1342.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3907.t1 is derived from g1343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13522181	13523950	.	-	.	Ledus.S1G132800
Ledus.S1	AUGUSTUS	transcript	13522181	13522639	.	-	.	transcript_id "Ledus.S1G132800.t1"; gene_id "Ledus.S1G132800"
Ledus.S1	AUGUSTUS	stop_codon	13522178	13522180	.	-	0	transcript_id "Ledus.S1G132800.t1"; gene_id "Ledus.S1G132800"
Ledus.S1	AUGUSTUS	CDS	13522181	13522639	0.9	-	0	transcript_id "Ledus.S1G132800.t1"; gene_id "Ledus.S1G132800"
Ledus.S1	AUGUSTUS	exon	13522181	13522639	.	-	.	transcript_id "Ledus.S1G132800.t1"; gene_id "Ledus.S1G132800"
Ledus.S1	AUGUSTUS	start_codon	13522637	13522639	.	-	0	transcript_id "Ledus.S1G132800.t1"; gene_id "Ledus.S1G132800"
Ledus.S1	AUGUSTUS	transcript	13522181	13523950	.	-	.	transcript_id "Ledus.S1G132800.t2"; gene_id "Ledus.S1G132800"
Ledus.S1	AUGUSTUS	stop_codon	13522178	13522180	.	-	0	transcript_id "Ledus.S1G132800.t2"; gene_id "Ledus.S1G132800"
Ledus.S1	AUGUSTUS	CDS	13522181	13523950	0.62	-	0	transcript_id "Ledus.S1G132800.t2"; gene_id "Ledus.S1G132800"
Ledus.S1	AUGUSTUS	exon	13522181	13523950	.	-	.	transcript_id "Ledus.S1G132800.t2"; gene_id "Ledus.S1G132800"
Ledus.S1	AUGUSTUS	start_codon	13523948	13523950	.	-	0	transcript_id "Ledus.S1G132800.t2"; gene_id "Ledus.S1G132800"
# This transcript jg10414.t2 is derived from g11444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10415.t1 is derived from g11445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15036359	15037670	.	-	.	Ledus.S3G189200
Ledus.S3	AUGUSTUS	transcript	15036359	15037670	.	-	.	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	stop_codon	15036356	15036358	.	-	0	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	CDS	15036359	15036442	0.99	-	0	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	exon	15036359	15036442	.	-	.	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	intron	15036443	15036533	.	-	.	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	CDS	15036534	15036722	1	-	0	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	exon	15036534	15036722	.	-	.	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	intron	15036723	15036885	.	-	.	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	CDS	15036886	15036956	0.67	-	2	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	exon	15036886	15036956	.	-	.	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	intron	15036957	15037061	.	-	.	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	CDS	15037062	15037329	0.69	-	0	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	exon	15037062	15037329	.	-	.	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	intron	15037330	15037440	.	-	.	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	CDS	15037441	15037466	0.72	-	2	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	exon	15037441	15037466	.	-	.	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	intron	15037467	15037654	.	-	.	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	CDS	15037655	15037670	1	-	0	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	exon	15037655	15037670	.	-	.	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
Ledus.S3	AUGUSTUS	start_codon	15037668	15037670	.	-	0	transcript_id "Ledus.S3G189200.t1"; gene_id "Ledus.S3G189200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4909.t1 is derived from g2347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20599834	20600388	.	-	.	Ledus.S1G233000
Ledus.S1	AUGUSTUS	transcript	20599834	20600388	.	-	.	transcript_id "Ledus.S1G233000.t1"; gene_id "Ledus.S1G233000"
Ledus.S1	AUGUSTUS	stop_codon	20599831	20599833	.	-	0	transcript_id "Ledus.S1G233000.t1"; gene_id "Ledus.S1G233000"
Ledus.S1	AUGUSTUS	CDS	20599834	20600388	0.87	-	0	transcript_id "Ledus.S1G233000.t1"; gene_id "Ledus.S1G233000"
Ledus.S1	AUGUSTUS	exon	20599834	20600388	.	-	.	transcript_id "Ledus.S1G233000.t1"; gene_id "Ledus.S1G233000"
Ledus.S1	AUGUSTUS	start_codon	20600386	20600388	.	-	0	transcript_id "Ledus.S1G233000.t1"; gene_id "Ledus.S1G233000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3632.t1 is derived from g1068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10312101	10313632	.	-	.	Ledus.S1G105300
Ledus.S1	AUGUSTUS	transcript	10312101	10313632	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	stop_codon	10312098	10312100	.	-	0	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	CDS	10312101	10312180	0.9	-	2	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	exon	10312101	10312180	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	intron	10312181	10312350	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	CDS	10312351	10312404	0.52	-	2	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	exon	10312351	10312404	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	intron	10312405	10312648	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	CDS	10312649	10312819	0.87	-	2	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	exon	10312649	10312819	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	intron	10312820	10312911	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	CDS	10312912	10312959	1	-	2	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	exon	10312912	10312959	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	intron	10312960	10313064	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	CDS	10313065	10313220	0.31	-	2	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	exon	10313065	10313220	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	intron	10313221	10313317	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	CDS	10313318	10313362	0.47	-	2	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	exon	10313318	10313362	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	intron	10313363	10313460	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	CDS	10313461	10313632	0.21	-	0	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	exon	10313461	10313632	.	-	.	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
Ledus.S1	AUGUSTUS	start_codon	10313630	10313632	.	-	0	transcript_id "Ledus.S1G105300.t1"; gene_id "Ledus.S1G105300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2526.t1 is derived from g9389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18589919	18591100	.	+	.	Ledus.S2G240800
Ledus.S2	AUGUSTUS	transcript	18589919	18591100	.	+	.	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	start_codon	18589919	18589921	.	+	0	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	CDS	18589919	18590087	0.78	+	0	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	exon	18589919	18590087	.	+	.	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	intron	18590088	18590180	.	+	.	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	CDS	18590181	18590283	1	+	2	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	exon	18590181	18590283	.	+	.	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	intron	18590284	18590400	.	+	.	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	CDS	18590401	18590512	1	+	1	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	exon	18590401	18590512	.	+	.	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	intron	18590513	18590648	.	+	.	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	CDS	18590649	18590701	0.96	+	0	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	exon	18590649	18590701	.	+	.	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	intron	18590702	18590767	.	+	.	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	CDS	18590768	18590826	0.61	+	1	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	exon	18590768	18590826	.	+	.	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	intron	18590827	18591026	.	+	.	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	CDS	18591027	18591100	0.6	+	2	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	exon	18591027	18591100	.	+	.	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
Ledus.S2	AUGUSTUS	stop_codon	18591101	18591103	.	+	0	transcript_id "Ledus.S2G240800.t1"; gene_id "Ledus.S2G240800"
# This transcript jg4462.t2 is derived from g1898.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4463.t1 is derived from g1899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17196862	17197351	.	-	.	Ledus.S1G188400
Ledus.S1	AUGUSTUS	transcript	17196862	17197351	.	-	.	transcript_id "Ledus.S1G188400.t1"; gene_id "Ledus.S1G188400"
Ledus.S1	AUGUSTUS	stop_codon	17196859	17196861	.	-	0	transcript_id "Ledus.S1G188400.t1"; gene_id "Ledus.S1G188400"
Ledus.S1	AUGUSTUS	CDS	17196862	17197077	1	-	0	transcript_id "Ledus.S1G188400.t1"; gene_id "Ledus.S1G188400"
Ledus.S1	AUGUSTUS	exon	17196862	17197077	.	-	.	transcript_id "Ledus.S1G188400.t1"; gene_id "Ledus.S1G188400"
Ledus.S1	AUGUSTUS	intron	17197078	17197174	.	-	.	transcript_id "Ledus.S1G188400.t1"; gene_id "Ledus.S1G188400"
Ledus.S1	AUGUSTUS	CDS	17197175	17197351	1	-	0	transcript_id "Ledus.S1G188400.t1"; gene_id "Ledus.S1G188400"
Ledus.S1	AUGUSTUS	exon	17197175	17197351	.	-	.	transcript_id "Ledus.S1G188400.t1"; gene_id "Ledus.S1G188400"
Ledus.S1	AUGUSTUS	start_codon	17197349	17197351	.	-	0	transcript_id "Ledus.S1G188400.t1"; gene_id "Ledus.S1G188400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3952.t1 is derived from g1388.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13703742	13704479	.	-	.	Ledus.S1G137300
Ledus.S1	AUGUSTUS	transcript	13703742	13704479	.	-	.	transcript_id "Ledus.S1G137300.t1"; gene_id "Ledus.S1G137300"
Ledus.S1	AUGUSTUS	stop_codon	13703739	13703741	.	-	0	transcript_id "Ledus.S1G137300.t1"; gene_id "Ledus.S1G137300"
Ledus.S1	AUGUSTUS	CDS	13703742	13704193	1	-	2	transcript_id "Ledus.S1G137300.t1"; gene_id "Ledus.S1G137300"
Ledus.S1	AUGUSTUS	exon	13703742	13704193	.	-	.	transcript_id "Ledus.S1G137300.t1"; gene_id "Ledus.S1G137300"
Ledus.S1	AUGUSTUS	intron	13704194	13704277	.	-	.	transcript_id "Ledus.S1G137300.t1"; gene_id "Ledus.S1G137300"
Ledus.S1	AUGUSTUS	CDS	13704278	13704479	0.96	-	0	transcript_id "Ledus.S1G137300.t1"; gene_id "Ledus.S1G137300"
Ledus.S1	AUGUSTUS	exon	13704278	13704479	.	-	.	transcript_id "Ledus.S1G137300.t1"; gene_id "Ledus.S1G137300"
Ledus.S1	AUGUSTUS	start_codon	13704477	13704479	.	-	0	transcript_id "Ledus.S1G137300.t1"; gene_id "Ledus.S1G137300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6147.t1 is derived from g3590.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29284532	29285113	.	+	.	Ledus.S1G356800
Ledus.S1	AUGUSTUS	transcript	29284532	29285113	.	+	.	transcript_id "Ledus.S1G356800.t1"; gene_id "Ledus.S1G356800"
Ledus.S1	AUGUSTUS	start_codon	29284532	29284534	.	+	0	transcript_id "Ledus.S1G356800.t1"; gene_id "Ledus.S1G356800"
Ledus.S1	AUGUSTUS	CDS	29284532	29285113	0.57	+	0	transcript_id "Ledus.S1G356800.t1"; gene_id "Ledus.S1G356800"
Ledus.S1	AUGUSTUS	exon	29284532	29285113	.	+	.	transcript_id "Ledus.S1G356800.t1"; gene_id "Ledus.S1G356800"
Ledus.S1	AUGUSTUS	stop_codon	29285114	29285116	.	+	0	transcript_id "Ledus.S1G356800.t1"; gene_id "Ledus.S1G356800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2295.t1 is derived from g9158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17064642	17067129	.	-	.	Ledus.S2G217700
Ledus.S2	AUGUSTUS	transcript	17064642	17067129	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	stop_codon	17064639	17064641	.	-	0	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	CDS	17064642	17064711	1	-	1	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	exon	17064642	17064711	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	intron	17064712	17064799	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	CDS	17064800	17064921	1	-	0	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	exon	17064800	17064921	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	intron	17064922	17065014	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	CDS	17065015	17065091	1	-	2	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	exon	17065015	17065091	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	intron	17065092	17065164	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	CDS	17065165	17065247	0.96	-	1	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	exon	17065165	17065247	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	intron	17065248	17065359	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	CDS	17065360	17065445	0.78	-	0	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	exon	17065360	17065445	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	intron	17065446	17065570	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	CDS	17065571	17065634	0.54	-	1	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	exon	17065571	17065634	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	intron	17065635	17065921	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	CDS	17065922	17066062	1	-	1	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	exon	17065922	17066062	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	intron	17066063	17066177	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	CDS	17066178	17066230	0.88	-	0	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	exon	17066178	17066230	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	intron	17066231	17066337	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	CDS	17066338	17066500	0.99	-	1	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	exon	17066338	17066500	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	intron	17066501	17066714	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	CDS	17066715	17066780	1	-	1	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	exon	17066715	17066780	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	intron	17066781	17066986	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	CDS	17066987	17067129	0.92	-	0	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	exon	17066987	17067129	.	-	.	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
Ledus.S2	AUGUSTUS	start_codon	17067127	17067129	.	-	0	transcript_id "Ledus.S2G217700.t1"; gene_id "Ledus.S2G217700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12827.t1 is derived from g6449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15247572	15248003	.	+	.	Ledus.S4G198300
Ledus.S4	AUGUSTUS	transcript	15247572	15248003	.	+	.	transcript_id "Ledus.S4G198300.t1"; gene_id "Ledus.S4G198300"
Ledus.S4	AUGUSTUS	start_codon	15247572	15247574	.	+	0	transcript_id "Ledus.S4G198300.t1"; gene_id "Ledus.S4G198300"
Ledus.S4	AUGUSTUS	CDS	15247572	15247703	0.37	+	0	transcript_id "Ledus.S4G198300.t1"; gene_id "Ledus.S4G198300"
Ledus.S4	AUGUSTUS	exon	15247572	15247703	.	+	.	transcript_id "Ledus.S4G198300.t1"; gene_id "Ledus.S4G198300"
Ledus.S4	AUGUSTUS	intron	15247704	15247910	.	+	.	transcript_id "Ledus.S4G198300.t1"; gene_id "Ledus.S4G198300"
Ledus.S4	AUGUSTUS	CDS	15247911	15248003	0.43	+	0	transcript_id "Ledus.S4G198300.t1"; gene_id "Ledus.S4G198300"
Ledus.S4	AUGUSTUS	exon	15247911	15248003	.	+	.	transcript_id "Ledus.S4G198300.t1"; gene_id "Ledus.S4G198300"
Ledus.S4	AUGUSTUS	stop_codon	15248004	15248006	.	+	0	transcript_id "Ledus.S4G198300.t1"; gene_id "Ledus.S4G198300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2232.t1 is derived from g9095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16217763	16218556	.	-	.	Ledus.S2G211400
Ledus.S2	AUGUSTUS	transcript	16217763	16218556	.	-	.	transcript_id "Ledus.S2G211400.t1"; gene_id "Ledus.S2G211400"
Ledus.S2	AUGUSTUS	stop_codon	16217760	16217762	.	-	0	transcript_id "Ledus.S2G211400.t1"; gene_id "Ledus.S2G211400"
Ledus.S2	AUGUSTUS	CDS	16217763	16218104	0.86	-	0	transcript_id "Ledus.S2G211400.t1"; gene_id "Ledus.S2G211400"
Ledus.S2	AUGUSTUS	exon	16217763	16218104	.	-	.	transcript_id "Ledus.S2G211400.t1"; gene_id "Ledus.S2G211400"
Ledus.S2	AUGUSTUS	intron	16218105	16218226	.	-	.	transcript_id "Ledus.S2G211400.t1"; gene_id "Ledus.S2G211400"
Ledus.S2	AUGUSTUS	CDS	16218227	16218556	0.91	-	0	transcript_id "Ledus.S2G211400.t1"; gene_id "Ledus.S2G211400"
Ledus.S2	AUGUSTUS	exon	16218227	16218556	.	-	.	transcript_id "Ledus.S2G211400.t1"; gene_id "Ledus.S2G211400"
Ledus.S2	AUGUSTUS	start_codon	16218554	16218556	.	-	0	transcript_id "Ledus.S2G211400.t1"; gene_id "Ledus.S2G211400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9599.t1 is derived from g10629.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8284915	8285746	.	-	.	Ledus.S3G107600
Ledus.S3	AUGUSTUS	transcript	8284915	8285746	.	-	.	transcript_id "Ledus.S3G107600.t1"; gene_id "Ledus.S3G107600"
Ledus.S3	AUGUSTUS	stop_codon	8284912	8284914	.	-	0	transcript_id "Ledus.S3G107600.t1"; gene_id "Ledus.S3G107600"
Ledus.S3	AUGUSTUS	CDS	8284915	8285546	0.94	-	2	transcript_id "Ledus.S3G107600.t1"; gene_id "Ledus.S3G107600"
Ledus.S3	AUGUSTUS	exon	8284915	8285546	.	-	.	transcript_id "Ledus.S3G107600.t1"; gene_id "Ledus.S3G107600"
Ledus.S3	AUGUSTUS	intron	8285547	8285622	.	-	.	transcript_id "Ledus.S3G107600.t1"; gene_id "Ledus.S3G107600"
Ledus.S3	AUGUSTUS	CDS	8285623	8285746	0.95	-	0	transcript_id "Ledus.S3G107600.t1"; gene_id "Ledus.S3G107600"
Ledus.S3	AUGUSTUS	exon	8285623	8285746	.	-	.	transcript_id "Ledus.S3G107600.t1"; gene_id "Ledus.S3G107600"
Ledus.S3	AUGUSTUS	start_codon	8285744	8285746	.	-	0	transcript_id "Ledus.S3G107600.t1"; gene_id "Ledus.S3G107600"
# This transcript jg8819.t2 is derived from g9849.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8820.t1 is derived from g9850.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2132249	2135812	.	+	.	Ledus.S3G029700
Ledus.S3	AUGUSTUS	transcript	2132249	2135812	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	start_codon	2132249	2132251	.	+	0	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	CDS	2132249	2133421	1	+	0	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	exon	2132249	2133421	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	intron	2133422	2133518	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	CDS	2133519	2133683	1	+	0	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	exon	2133519	2133683	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	intron	2133684	2133894	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	CDS	2133895	2134677	1	+	0	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	exon	2133895	2134677	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	intron	2134678	2134757	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	CDS	2134758	2134868	1	+	0	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	exon	2134758	2134868	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	intron	2134869	2134951	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	CDS	2134952	2135212	0.99	+	0	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	exon	2134952	2135212	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	intron	2135213	2135287	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	CDS	2135288	2135511	1	+	0	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	exon	2135288	2135511	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	intron	2135512	2135607	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	CDS	2135608	2135812	1	+	1	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	exon	2135608	2135812	.	+	.	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	stop_codon	2135813	2135815	.	+	0	transcript_id "Ledus.S3G029700.t1"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	transcript	2132249	2133914	.	+	.	transcript_id "Ledus.S3G029700.t2"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	start_codon	2132249	2132251	.	+	0	transcript_id "Ledus.S3G029700.t2"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	CDS	2132249	2133421	0.99	+	0	transcript_id "Ledus.S3G029700.t2"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	exon	2132249	2133421	.	+	.	transcript_id "Ledus.S3G029700.t2"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	intron	2133422	2133518	.	+	.	transcript_id "Ledus.S3G029700.t2"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	CDS	2133519	2133672	0.81	+	0	transcript_id "Ledus.S3G029700.t2"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	exon	2133519	2133672	.	+	.	transcript_id "Ledus.S3G029700.t2"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	intron	2133673	2133894	.	+	.	transcript_id "Ledus.S3G029700.t2"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	CDS	2133895	2133914	0.78	+	2	transcript_id "Ledus.S3G029700.t2"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	exon	2133895	2133914	.	+	.	transcript_id "Ledus.S3G029700.t2"; gene_id "Ledus.S3G029700"
Ledus.S3	AUGUSTUS	stop_codon	2133915	2133917	.	+	0	transcript_id "Ledus.S3G029700.t2"; gene_id "Ledus.S3G029700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13006.t1 is derived from g6816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2605940	2606428	.	+	.	Ledus.S6G006800
Ledus.S6	AUGUSTUS	transcript	2605940	2606428	.	+	.	transcript_id "Ledus.S6G006800.t1"; gene_id "Ledus.S6G006800"
Ledus.S6	AUGUSTUS	start_codon	2605940	2605942	.	+	0	transcript_id "Ledus.S6G006800.t1"; gene_id "Ledus.S6G006800"
Ledus.S6	AUGUSTUS	CDS	2605940	2606052	0.99	+	0	transcript_id "Ledus.S6G006800.t1"; gene_id "Ledus.S6G006800"
Ledus.S6	AUGUSTUS	exon	2605940	2606052	.	+	.	transcript_id "Ledus.S6G006800.t1"; gene_id "Ledus.S6G006800"
Ledus.S6	AUGUSTUS	intron	2606053	2606218	.	+	.	transcript_id "Ledus.S6G006800.t1"; gene_id "Ledus.S6G006800"
Ledus.S6	AUGUSTUS	CDS	2606219	2606256	1	+	1	transcript_id "Ledus.S6G006800.t1"; gene_id "Ledus.S6G006800"
Ledus.S6	AUGUSTUS	exon	2606219	2606256	.	+	.	transcript_id "Ledus.S6G006800.t1"; gene_id "Ledus.S6G006800"
Ledus.S6	AUGUSTUS	intron	2606257	2606342	.	+	.	transcript_id "Ledus.S6G006800.t1"; gene_id "Ledus.S6G006800"
Ledus.S6	AUGUSTUS	CDS	2606343	2606428	0.9	+	2	transcript_id "Ledus.S6G006800.t1"; gene_id "Ledus.S6G006800"
Ledus.S6	AUGUSTUS	exon	2606343	2606428	.	+	.	transcript_id "Ledus.S6G006800.t1"; gene_id "Ledus.S6G006800"
Ledus.S6	AUGUSTUS	stop_codon	2606429	2606431	.	+	0	transcript_id "Ledus.S6G006800.t1"; gene_id "Ledus.S6G006800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7993.t1 is derived from g12664.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8378207	8380935	.	-	.	Ledus.S5G077100
Ledus.S5	AUGUSTUS	transcript	8378207	8380935	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	stop_codon	8378204	8378206	.	-	0	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8378207	8378801	0.97	-	1	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8378207	8378801	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8378802	8378906	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8378907	8378972	0.97	-	1	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8378907	8378972	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8378973	8379074	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8379075	8379117	1	-	2	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8379075	8379117	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8379118	8379276	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8379277	8379348	1	-	2	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8379277	8379348	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8379349	8379433	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8379434	8379553	0.98	-	2	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8379434	8379553	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8379554	8379760	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8379761	8379800	0.99	-	0	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8379761	8379800	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8379801	8380007	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8380008	8380156	0.38	-	2	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8380008	8380156	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8380157	8380209	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8380210	8380322	0.85	-	1	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8380210	8380322	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8380323	8380424	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8380425	8380468	0.94	-	0	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8380425	8380468	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8380469	8380557	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8380558	8380632	1	-	0	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8380558	8380632	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8380633	8380732	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8380733	8380802	1	-	1	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8380733	8380802	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8380803	8380891	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8380892	8380935	0.99	-	0	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8380892	8380935	.	-	.	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	start_codon	8380933	8380935	.	-	0	transcript_id "Ledus.S5G077100.t1"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	transcript	8378207	8380935	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	stop_codon	8378204	8378206	.	-	0	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8378207	8378801	0.99	-	1	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8378207	8378801	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8378802	8378906	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8378907	8378972	0.95	-	1	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8378907	8378972	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8378973	8379074	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8379075	8379117	1	-	2	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8379075	8379117	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8379118	8379276	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8379277	8379348	1	-	2	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8379277	8379348	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8379349	8379433	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8379434	8379553	0.97	-	2	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8379434	8379553	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8379554	8379654	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8379655	8379730	1	-	0	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8379655	8379730	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8379731	8380007	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8380008	8380156	0.42	-	2	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8380008	8380156	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8380157	8380209	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8380210	8380322	0.83	-	1	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8380210	8380322	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8380323	8380424	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8380425	8380468	0.93	-	0	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8380425	8380468	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8380469	8380557	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8380558	8380632	1	-	0	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8380558	8380632	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8380633	8380732	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8380733	8380802	1	-	1	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8380733	8380802	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	intron	8380803	8380891	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	CDS	8380892	8380935	0.98	-	0	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	exon	8380892	8380935	.	-	.	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
Ledus.S5	AUGUSTUS	start_codon	8380933	8380935	.	-	0	transcript_id "Ledus.S5G077100.t2"; gene_id "Ledus.S5G077100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg69.t1 is derived from g9482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	223732	225047	.	-	.	Ledus.C8G002900
Ledus.C8	AUGUSTUS	transcript	223732	225047	.	-	.	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	stop_codon	223729	223731	.	-	0	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	CDS	223732	223925	0.97	-	2	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	exon	223732	223925	.	-	.	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	intron	223926	224026	.	-	.	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	CDS	224027	224152	1	-	2	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	exon	224027	224152	.	-	.	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	intron	224153	224229	.	-	.	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	CDS	224230	224548	1	-	0	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	exon	224230	224548	.	-	.	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	intron	224549	224624	.	-	.	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	CDS	224625	225047	1	-	0	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	exon	224625	225047	.	-	.	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
Ledus.C8	AUGUSTUS	start_codon	225045	225047	.	-	0	transcript_id "Ledus.C8G002900.t1"; gene_id "Ledus.C8G002900"
# This transcript jg11512.t2 is derived from g5130.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11513.t1 is derived from g5131.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5006507	5006813	.	+	.	Ledus.S4G066900
Ledus.S4	AUGUSTUS	transcript	5006507	5006813	.	+	.	transcript_id "Ledus.S4G066900.t1"; gene_id "Ledus.S4G066900"
Ledus.S4	AUGUSTUS	start_codon	5006507	5006509	.	+	0	transcript_id "Ledus.S4G066900.t1"; gene_id "Ledus.S4G066900"
Ledus.S4	AUGUSTUS	CDS	5006507	5006568	0.73	+	0	transcript_id "Ledus.S4G066900.t1"; gene_id "Ledus.S4G066900"
Ledus.S4	AUGUSTUS	exon	5006507	5006568	.	+	.	transcript_id "Ledus.S4G066900.t1"; gene_id "Ledus.S4G066900"
Ledus.S4	AUGUSTUS	intron	5006569	5006650	.	+	.	transcript_id "Ledus.S4G066900.t1"; gene_id "Ledus.S4G066900"
Ledus.S4	AUGUSTUS	CDS	5006651	5006813	1	+	1	transcript_id "Ledus.S4G066900.t1"; gene_id "Ledus.S4G066900"
Ledus.S4	AUGUSTUS	exon	5006651	5006813	.	+	.	transcript_id "Ledus.S4G066900.t1"; gene_id "Ledus.S4G066900"
Ledus.S4	AUGUSTUS	stop_codon	5006814	5006816	.	+	0	transcript_id "Ledus.S4G066900.t1"; gene_id "Ledus.S4G066900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9148.t1 is derived from g10178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4888454	4890310	.	-	.	Ledus.S3G062500
Ledus.S3	AUGUSTUS	transcript	4888454	4890310	.	-	.	transcript_id "Ledus.S3G062500.t1"; gene_id "Ledus.S3G062500"
Ledus.S3	AUGUSTUS	stop_codon	4888451	4888453	.	-	0	transcript_id "Ledus.S3G062500.t1"; gene_id "Ledus.S3G062500"
Ledus.S3	AUGUSTUS	CDS	4888454	4890310	0.96	-	0	transcript_id "Ledus.S3G062500.t1"; gene_id "Ledus.S3G062500"
Ledus.S3	AUGUSTUS	exon	4888454	4890310	.	-	.	transcript_id "Ledus.S3G062500.t1"; gene_id "Ledus.S3G062500"
Ledus.S3	AUGUSTUS	start_codon	4890308	4890310	.	-	0	transcript_id "Ledus.S3G062500.t1"; gene_id "Ledus.S3G062500"
Ledus.S3	AUGUSTUS	transcript	4888454	4889431	.	-	.	transcript_id "Ledus.S3G062500.t2"; gene_id "Ledus.S3G062500"
Ledus.S3	AUGUSTUS	stop_codon	4888451	4888453	.	-	0	transcript_id "Ledus.S3G062500.t2"; gene_id "Ledus.S3G062500"
Ledus.S3	AUGUSTUS	CDS	4888454	4889431	0.88	-	0	transcript_id "Ledus.S3G062500.t2"; gene_id "Ledus.S3G062500"
Ledus.S3	AUGUSTUS	exon	4888454	4889431	.	-	.	transcript_id "Ledus.S3G062500.t2"; gene_id "Ledus.S3G062500"
Ledus.S3	AUGUSTUS	start_codon	4889429	4889431	.	-	0	transcript_id "Ledus.S3G062500.t2"; gene_id "Ledus.S3G062500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1078.t1 is derived from g7939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7304005	7307710	.	-	.	Ledus.S2G096000
Ledus.S2	AUGUSTUS	transcript	7304005	7307710	.	-	.	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	stop_codon	7304002	7304004	.	-	0	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	CDS	7304005	7304145	0.55	-	0	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	exon	7304005	7304145	.	-	.	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	intron	7304146	7304245	.	-	.	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	CDS	7304246	7304377	0.98	-	0	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	exon	7304246	7304377	.	-	.	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	intron	7304378	7304582	.	-	.	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	CDS	7304583	7304643	0.9	-	1	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	exon	7304583	7304643	.	-	.	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	intron	7304644	7304735	.	-	.	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	CDS	7304736	7307710	0.86	-	0	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	exon	7304736	7307710	.	-	.	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
Ledus.S2	AUGUSTUS	start_codon	7307708	7307710	.	-	0	transcript_id "Ledus.S2G096000.t1"; gene_id "Ledus.S2G096000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg562.t1 is derived from g7423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3358589	3359386	.	-	.	Ledus.S2G044400
Ledus.S2	AUGUSTUS	transcript	3358589	3359386	.	-	.	transcript_id "Ledus.S2G044400.t1"; gene_id "Ledus.S2G044400"
Ledus.S2	AUGUSTUS	stop_codon	3358586	3358588	.	-	0	transcript_id "Ledus.S2G044400.t1"; gene_id "Ledus.S2G044400"
Ledus.S2	AUGUSTUS	CDS	3358589	3358616	0.41	-	1	transcript_id "Ledus.S2G044400.t1"; gene_id "Ledus.S2G044400"
Ledus.S2	AUGUSTUS	exon	3358589	3358616	.	-	.	transcript_id "Ledus.S2G044400.t1"; gene_id "Ledus.S2G044400"
Ledus.S2	AUGUSTUS	intron	3358617	3358808	.	-	.	transcript_id "Ledus.S2G044400.t1"; gene_id "Ledus.S2G044400"
Ledus.S2	AUGUSTUS	CDS	3358809	3359386	0.29	-	0	transcript_id "Ledus.S2G044400.t1"; gene_id "Ledus.S2G044400"
Ledus.S2	AUGUSTUS	exon	3358809	3359386	.	-	.	transcript_id "Ledus.S2G044400.t1"; gene_id "Ledus.S2G044400"
Ledus.S2	AUGUSTUS	start_codon	3359384	3359386	.	-	0	transcript_id "Ledus.S2G044400.t1"; gene_id "Ledus.S2G044400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4502.t1 is derived from g1938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17394658	17395151	.	-	.	Ledus.S1G192300
Ledus.S1	AUGUSTUS	transcript	17394658	17395151	.	-	.	transcript_id "Ledus.S1G192300.t1"; gene_id "Ledus.S1G192300"
Ledus.S1	AUGUSTUS	stop_codon	17394655	17394657	.	-	0	transcript_id "Ledus.S1G192300.t1"; gene_id "Ledus.S1G192300"
Ledus.S1	AUGUSTUS	CDS	17394658	17394698	0.72	-	2	transcript_id "Ledus.S1G192300.t1"; gene_id "Ledus.S1G192300"
Ledus.S1	AUGUSTUS	exon	17394658	17394698	.	-	.	transcript_id "Ledus.S1G192300.t1"; gene_id "Ledus.S1G192300"
Ledus.S1	AUGUSTUS	intron	17394699	17394874	.	-	.	transcript_id "Ledus.S1G192300.t1"; gene_id "Ledus.S1G192300"
Ledus.S1	AUGUSTUS	CDS	17394875	17395151	0.81	-	0	transcript_id "Ledus.S1G192300.t1"; gene_id "Ledus.S1G192300"
Ledus.S1	AUGUSTUS	exon	17394875	17395151	.	-	.	transcript_id "Ledus.S1G192300.t1"; gene_id "Ledus.S1G192300"
Ledus.S1	AUGUSTUS	start_codon	17395149	17395151	.	-	0	transcript_id "Ledus.S1G192300.t1"; gene_id "Ledus.S1G192300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg804.t1 is derived from g7665.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5216632	5217578	.	-	.	Ledus.S2G068600
Ledus.S2	AUGUSTUS	transcript	5216632	5217578	.	-	.	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	stop_codon	5216629	5216631	.	-	0	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	CDS	5216632	5216971	0.99	-	1	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	exon	5216632	5216971	.	-	.	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	intron	5216972	5217070	.	-	.	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	CDS	5217071	5217271	0.98	-	1	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	exon	5217071	5217271	.	-	.	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	intron	5217272	5217364	.	-	.	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	CDS	5217365	5217430	0.67	-	1	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	exon	5217365	5217430	.	-	.	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	intron	5217431	5217522	.	-	.	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	CDS	5217523	5217578	0.65	-	0	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	exon	5217523	5217578	.	-	.	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
Ledus.S2	AUGUSTUS	start_codon	5217576	5217578	.	-	0	transcript_id "Ledus.S2G068600.t1"; gene_id "Ledus.S2G068600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11372.t1 is derived from g4990.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3875502	3876452	.	+	.	Ledus.S4G052800
Ledus.S4	AUGUSTUS	transcript	3875502	3876452	.	+	.	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	start_codon	3875502	3875504	.	+	0	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	CDS	3875502	3875552	1	+	0	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	exon	3875502	3875552	.	+	.	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	intron	3875553	3875626	.	+	.	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	CDS	3875627	3875869	1	+	0	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	exon	3875627	3875869	.	+	.	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	intron	3875870	3875969	.	+	.	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	CDS	3875970	3876107	1	+	0	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	exon	3875970	3876107	.	+	.	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	intron	3876108	3876196	.	+	.	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	CDS	3876197	3876255	1	+	0	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	exon	3876197	3876255	.	+	.	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	intron	3876256	3876331	.	+	.	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	CDS	3876332	3876452	1	+	1	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	exon	3876332	3876452	.	+	.	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
Ledus.S4	AUGUSTUS	stop_codon	3876453	3876455	.	+	0	transcript_id "Ledus.S4G052800.t1"; gene_id "Ledus.S4G052800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9945.t1 is derived from g10975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11424664	11425932	.	-	.	Ledus.S3G142200
Ledus.S3	AUGUSTUS	transcript	11424664	11425932	.	-	.	transcript_id "Ledus.S3G142200.t1"; gene_id "Ledus.S3G142200"
Ledus.S3	AUGUSTUS	stop_codon	11424661	11424663	.	-	0	transcript_id "Ledus.S3G142200.t1"; gene_id "Ledus.S3G142200"
Ledus.S3	AUGUSTUS	CDS	11424664	11424785	0.47	-	2	transcript_id "Ledus.S3G142200.t1"; gene_id "Ledus.S3G142200"
Ledus.S3	AUGUSTUS	exon	11424664	11424785	.	-	.	transcript_id "Ledus.S3G142200.t1"; gene_id "Ledus.S3G142200"
Ledus.S3	AUGUSTUS	intron	11424786	11424973	.	-	.	transcript_id "Ledus.S3G142200.t1"; gene_id "Ledus.S3G142200"
Ledus.S3	AUGUSTUS	CDS	11424974	11425067	1	-	0	transcript_id "Ledus.S3G142200.t1"; gene_id "Ledus.S3G142200"
Ledus.S3	AUGUSTUS	exon	11424974	11425067	.	-	.	transcript_id "Ledus.S3G142200.t1"; gene_id "Ledus.S3G142200"
Ledus.S3	AUGUSTUS	intron	11425068	11425929	.	-	.	transcript_id "Ledus.S3G142200.t1"; gene_id "Ledus.S3G142200"
Ledus.S3	AUGUSTUS	CDS	11425930	11425932	0.99	-	0	transcript_id "Ledus.S3G142200.t1"; gene_id "Ledus.S3G142200"
Ledus.S3	AUGUSTUS	exon	11425930	11425932	.	-	.	transcript_id "Ledus.S3G142200.t1"; gene_id "Ledus.S3G142200"
Ledus.S3	AUGUSTUS	start_codon	11425930	11425932	.	-	0	transcript_id "Ledus.S3G142200.t1"; gene_id "Ledus.S3G142200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8178.t1 is derived from g12849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9691332	9692292	.	+	.	Ledus.S5G095600
Ledus.S5	AUGUSTUS	transcript	9691332	9692292	.	+	.	transcript_id "Ledus.S5G095600.t1"; gene_id "Ledus.S5G095600"
Ledus.S5	AUGUSTUS	start_codon	9691332	9691334	.	+	0	transcript_id "Ledus.S5G095600.t1"; gene_id "Ledus.S5G095600"
Ledus.S5	AUGUSTUS	CDS	9691332	9691674	0.87	+	0	transcript_id "Ledus.S5G095600.t1"; gene_id "Ledus.S5G095600"
Ledus.S5	AUGUSTUS	exon	9691332	9691674	.	+	.	transcript_id "Ledus.S5G095600.t1"; gene_id "Ledus.S5G095600"
Ledus.S5	AUGUSTUS	intron	9691675	9691745	.	+	.	transcript_id "Ledus.S5G095600.t1"; gene_id "Ledus.S5G095600"
Ledus.S5	AUGUSTUS	CDS	9691746	9692031	0.55	+	2	transcript_id "Ledus.S5G095600.t1"; gene_id "Ledus.S5G095600"
Ledus.S5	AUGUSTUS	exon	9691746	9692031	.	+	.	transcript_id "Ledus.S5G095600.t1"; gene_id "Ledus.S5G095600"
Ledus.S5	AUGUSTUS	intron	9692032	9692252	.	+	.	transcript_id "Ledus.S5G095600.t1"; gene_id "Ledus.S5G095600"
Ledus.S5	AUGUSTUS	CDS	9692253	9692292	0.56	+	1	transcript_id "Ledus.S5G095600.t1"; gene_id "Ledus.S5G095600"
Ledus.S5	AUGUSTUS	exon	9692253	9692292	.	+	.	transcript_id "Ledus.S5G095600.t1"; gene_id "Ledus.S5G095600"
Ledus.S5	AUGUSTUS	stop_codon	9692293	9692295	.	+	0	transcript_id "Ledus.S5G095600.t1"; gene_id "Ledus.S5G095600"
# This transcript jg12452.t2 is derived from g6073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12453.t1 is derived from g6074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12081808	12082269	.	+	.	Ledus.S4G160900
Ledus.S4	AUGUSTUS	transcript	12081808	12082269	.	+	.	transcript_id "Ledus.S4G160900.t1"; gene_id "Ledus.S4G160900"
Ledus.S4	AUGUSTUS	start_codon	12081808	12081810	.	+	0	transcript_id "Ledus.S4G160900.t1"; gene_id "Ledus.S4G160900"
Ledus.S4	AUGUSTUS	CDS	12081808	12082269	1	+	0	transcript_id "Ledus.S4G160900.t1"; gene_id "Ledus.S4G160900"
Ledus.S4	AUGUSTUS	exon	12081808	12082269	.	+	.	transcript_id "Ledus.S4G160900.t1"; gene_id "Ledus.S4G160900"
Ledus.S4	AUGUSTUS	stop_codon	12082270	12082272	.	+	0	transcript_id "Ledus.S4G160900.t1"; gene_id "Ledus.S4G160900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8155.t1 is derived from g12826.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9434611	9438894	.	+	.	Ledus.S5G093300
Ledus.S5	AUGUSTUS	transcript	9434611	9438894	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	start_codon	9434611	9434613	.	+	0	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9434611	9434701	0.78	+	0	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9434611	9434701	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9434702	9434777	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9434778	9434907	0.96	+	2	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9434778	9434907	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9434908	9435009	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9435010	9435198	1	+	1	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9435010	9435198	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9435199	9435272	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9435273	9435341	1	+	1	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9435273	9435341	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9435342	9435418	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9435419	9435490	1	+	1	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9435419	9435490	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9435491	9435568	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9435569	9435637	1	+	1	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9435569	9435637	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9435638	9435716	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9435717	9435788	1	+	1	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9435717	9435788	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9435789	9435873	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9435874	9435945	1	+	1	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9435874	9435945	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9435946	9436028	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9436029	9436100	1	+	1	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9436029	9436100	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9436101	9436193	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9436194	9436268	1	+	1	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9436194	9436268	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9436269	9436357	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9436358	9436426	1	+	1	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9436358	9436426	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9436427	9436519	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9436520	9436570	1	+	1	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9436520	9436570	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9436571	9436669	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9436670	9436887	0.96	+	1	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9436670	9436887	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9436888	9436960	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9436961	9437116	1	+	2	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9436961	9437116	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9437117	9437208	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9437209	9437492	1	+	2	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9437209	9437492	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9437493	9437603	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9437604	9437655	1	+	0	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9437604	9437655	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9437656	9437758	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9437759	9437850	1	+	2	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9437759	9437850	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9437851	9437946	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9437947	9438092	1	+	0	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9437947	9438092	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9438093	9438195	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9438196	9438340	1	+	1	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9438196	9438340	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9438341	9438422	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9438423	9438569	0.99	+	0	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9438423	9438569	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	intron	9438570	9438678	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	CDS	9438679	9438894	0.99	+	0	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	exon	9438679	9438894	.	+	.	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
Ledus.S5	AUGUSTUS	stop_codon	9438895	9438897	.	+	0	transcript_id "Ledus.S5G093300.t1"; gene_id "Ledus.S5G093300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7609.t1 is derived from g12280.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4350430	4351443	.	-	.	Ledus.S5G038700
Ledus.S5	AUGUSTUS	transcript	4350430	4351443	.	-	.	transcript_id "Ledus.S5G038700.t1"; gene_id "Ledus.S5G038700"
Ledus.S5	AUGUSTUS	stop_codon	4350427	4350429	.	-	0	transcript_id "Ledus.S5G038700.t1"; gene_id "Ledus.S5G038700"
Ledus.S5	AUGUSTUS	CDS	4350430	4350564	0.55	-	0	transcript_id "Ledus.S5G038700.t1"; gene_id "Ledus.S5G038700"
Ledus.S5	AUGUSTUS	exon	4350430	4350564	.	-	.	transcript_id "Ledus.S5G038700.t1"; gene_id "Ledus.S5G038700"
Ledus.S5	AUGUSTUS	intron	4350565	4350715	.	-	.	transcript_id "Ledus.S5G038700.t1"; gene_id "Ledus.S5G038700"
Ledus.S5	AUGUSTUS	CDS	4350716	4350878	0.48	-	1	transcript_id "Ledus.S5G038700.t1"; gene_id "Ledus.S5G038700"
Ledus.S5	AUGUSTUS	exon	4350716	4350878	.	-	.	transcript_id "Ledus.S5G038700.t1"; gene_id "Ledus.S5G038700"
Ledus.S5	AUGUSTUS	intron	4350879	4351114	.	-	.	transcript_id "Ledus.S5G038700.t1"; gene_id "Ledus.S5G038700"
Ledus.S5	AUGUSTUS	CDS	4351115	4351443	0.49	-	0	transcript_id "Ledus.S5G038700.t1"; gene_id "Ledus.S5G038700"
Ledus.S5	AUGUSTUS	exon	4351115	4351443	.	-	.	transcript_id "Ledus.S5G038700.t1"; gene_id "Ledus.S5G038700"
Ledus.S5	AUGUSTUS	start_codon	4351441	4351443	.	-	0	transcript_id "Ledus.S5G038700.t1"; gene_id "Ledus.S5G038700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12179.t1 is derived from g5798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10162407	10163689	.	+	.	Ledus.S4G133500
Ledus.S4	AUGUSTUS	transcript	10162407	10163689	.	+	.	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	start_codon	10162407	10162409	.	+	0	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	CDS	10162407	10162532	0.96	+	0	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	exon	10162407	10162532	.	+	.	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	intron	10162533	10162934	.	+	.	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	CDS	10162935	10162976	1	+	0	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	exon	10162935	10162976	.	+	.	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	intron	10162977	10163292	.	+	.	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	CDS	10163293	10163374	1	+	0	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	exon	10163293	10163374	.	+	.	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	intron	10163375	10163490	.	+	.	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	CDS	10163491	10163546	0.88	+	2	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	exon	10163491	10163546	.	+	.	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	intron	10163547	10163653	.	+	.	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	CDS	10163654	10163689	0.52	+	0	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	exon	10163654	10163689	.	+	.	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
Ledus.S4	AUGUSTUS	stop_codon	10163690	10163692	.	+	0	transcript_id "Ledus.S4G133500.t1"; gene_id "Ledus.S4G133500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3828.t1 is derived from g1264.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12840852	12846207	.	-	.	Ledus.S1G124900
Ledus.S1	AUGUSTUS	transcript	12840852	12846207	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	stop_codon	12840849	12840851	.	-	0	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12840852	12841063	0.87	-	2	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12840852	12841063	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12841064	12841176	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12841177	12841369	0.99	-	0	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12841177	12841369	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12841370	12841467	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12841468	12841736	0.99	-	2	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12841468	12841736	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12841737	12841888	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12841889	12841934	1	-	0	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12841889	12841934	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12841935	12842006	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12842007	12842081	1	-	0	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12842007	12842081	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12842082	12842195	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12842196	12842319	0.94	-	1	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12842196	12842319	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12842320	12842481	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12842482	12842603	0.91	-	0	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12842482	12842603	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12842604	12842721	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12842722	12842838	0.96	-	0	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12842722	12842838	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12842839	12843023	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12843024	12843157	0.99	-	2	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12843024	12843157	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12843158	12843247	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12843248	12843376	1	-	2	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12843248	12843376	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12843377	12843518	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12843519	12843608	1	-	2	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12843519	12843608	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12843609	12843701	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12843702	12843811	1	-	1	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12843702	12843811	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12843812	12843913	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12843914	12844040	0.95	-	2	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12843914	12844040	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12844041	12844234	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12844235	12844454	0.96	-	0	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12844235	12844454	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12844455	12844595	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12844596	12844767	1	-	1	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12844596	12844767	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12844768	12845007	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12845008	12845105	1	-	0	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12845008	12845105	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12845106	12845221	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12845222	12845289	0.93	-	2	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12845222	12845289	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12845290	12845447	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12845448	12845565	0.8	-	0	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12845448	12845565	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12845566	12845674	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12845675	12845738	1	-	1	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12845675	12845738	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12845739	12845913	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12845914	12845957	1	-	0	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12845914	12845957	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12845958	12846150	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12846151	12846207	1	-	0	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12846151	12846207	.	-	.	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	start_codon	12846205	12846207	.	-	0	transcript_id "Ledus.S1G124900.t1"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	transcript	12840852	12846207	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	stop_codon	12840849	12840851	.	-	0	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12840852	12841063	0.77	-	2	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12840852	12841063	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12841064	12841176	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12841177	12841369	0.99	-	0	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12841177	12841369	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12841370	12841467	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12841468	12841736	1	-	2	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12841468	12841736	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12841737	12841888	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12841889	12841934	1	-	0	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12841889	12841934	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12841935	12842006	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12842007	12842081	1	-	0	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12842007	12842081	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12842082	12842195	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12842196	12842319	0.93	-	1	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12842196	12842319	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12842320	12842481	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12842482	12842603	0.88	-	0	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12842482	12842603	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12842604	12842721	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12842722	12842838	0.91	-	0	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12842722	12842838	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12842839	12843023	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12843024	12843157	1	-	2	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12843024	12843157	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12843158	12843247	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12843248	12843376	1	-	2	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12843248	12843376	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12843377	12843518	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12843519	12843611	0.99	-	2	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12843519	12843611	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12843612	12843701	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12843702	12843811	1	-	1	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12843702	12843811	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12843812	12843913	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12843914	12844040	0.95	-	2	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12843914	12844040	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12844041	12844234	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12844235	12844454	0.99	-	0	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12844235	12844454	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12844455	12844595	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12844596	12844767	1	-	1	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12844596	12844767	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12844768	12845007	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12845008	12845105	1	-	0	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12845008	12845105	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12845106	12845221	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12845222	12845289	0.92	-	2	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12845222	12845289	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12845290	12845447	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12845448	12845565	0.78	-	0	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12845448	12845565	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12845566	12845674	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12845675	12845738	1	-	1	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12845675	12845738	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12845739	12845913	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12845914	12845957	1	-	0	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12845914	12845957	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	intron	12845958	12846150	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	CDS	12846151	12846207	1	-	0	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	exon	12846151	12846207	.	-	.	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
Ledus.S1	AUGUSTUS	start_codon	12846205	12846207	.	-	0	transcript_id "Ledus.S1G124900.t2"; gene_id "Ledus.S1G124900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3372.t1 is derived from g807.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7928568	7932089	.	+	.	Ledus.S1G079300
Ledus.S1	AUGUSTUS	transcript	7928568	7932089	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	start_codon	7928568	7928570	.	+	0	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	CDS	7928568	7928741	0.93	+	0	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	exon	7928568	7928741	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	intron	7928742	7929312	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	CDS	7929313	7929374	1	+	0	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	exon	7929313	7929374	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	intron	7929375	7929858	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	CDS	7929859	7929961	0.58	+	1	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	exon	7929859	7929961	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	intron	7929962	7930066	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	CDS	7930067	7930143	0.93	+	0	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	exon	7930067	7930143	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	intron	7930144	7930254	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	CDS	7930255	7930316	1	+	1	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	exon	7930255	7930316	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	intron	7930317	7930421	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	CDS	7930422	7930509	0.99	+	2	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	exon	7930422	7930509	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	intron	7930510	7930614	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	CDS	7930615	7930690	0.98	+	1	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	exon	7930615	7930690	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	intron	7930691	7930854	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	CDS	7930855	7930885	1	+	0	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	exon	7930855	7930885	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	intron	7930886	7930988	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	CDS	7930989	7931138	1	+	2	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	exon	7930989	7931138	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	intron	7931139	7931241	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	CDS	7931242	7931345	0.93	+	2	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	exon	7931242	7931345	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	intron	7931346	7931446	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	CDS	7931447	7931620	0.99	+	0	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	exon	7931447	7931620	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	intron	7931621	7931774	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	CDS	7931775	7932089	0.99	+	0	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	exon	7931775	7932089	.	+	.	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
Ledus.S1	AUGUSTUS	stop_codon	7932090	7932092	.	+	0	transcript_id "Ledus.S1G079300.t1"; gene_id "Ledus.S1G079300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4748.t1 is derived from g2186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19537038	19538592	.	-	.	Ledus.S1G216900
Ledus.S1	AUGUSTUS	transcript	19537038	19538592	.	-	.	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	stop_codon	19537035	19537037	.	-	0	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	CDS	19537038	19537115	0.93	-	0	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	exon	19537038	19537115	.	-	.	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	intron	19537116	19537273	.	-	.	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	CDS	19537274	19537362	1	-	2	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	exon	19537274	19537362	.	-	.	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	intron	19537363	19537892	.	-	.	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	CDS	19537893	19537947	0.88	-	0	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	exon	19537893	19537947	.	-	.	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	intron	19537948	19538202	.	-	.	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	CDS	19538203	19538592	0.52	-	0	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	exon	19538203	19538592	.	-	.	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
Ledus.S1	AUGUSTUS	start_codon	19538590	19538592	.	-	0	transcript_id "Ledus.S1G216900.t1"; gene_id "Ledus.S1G216900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11230.t1 is derived from g4848.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2833128	2836964	.	-	.	Ledus.S4G038600
Ledus.S4	AUGUSTUS	transcript	2833128	2836964	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	stop_codon	2833125	2833127	.	-	0	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2833128	2833152	0.75	-	1	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2833128	2833152	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	intron	2833153	2833324	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2833325	2833537	0.84	-	1	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2833325	2833537	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	intron	2833538	2833632	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2833633	2833992	1	-	1	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2833633	2833992	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	intron	2833993	2834077	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2834078	2834192	1	-	2	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2834078	2834192	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	intron	2834193	2834275	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2834276	2834304	0.59	-	1	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2834276	2834304	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	intron	2834305	2834426	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2834427	2834518	0.57	-	0	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2834427	2834518	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	intron	2834519	2834781	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2834782	2835004	0.33	-	1	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2834782	2835004	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	intron	2835005	2835098	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2835099	2835391	0.6	-	0	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2835099	2835391	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	intron	2835392	2835500	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2835501	2835640	0.99	-	2	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2835501	2835640	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	intron	2835641	2835774	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2835775	2835980	1	-	1	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2835775	2835980	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	intron	2835981	2836110	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2836111	2836217	1	-	0	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2836111	2836217	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	intron	2836218	2836365	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2836366	2836545	1	-	0	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2836366	2836545	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	intron	2836546	2836667	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	CDS	2836668	2836964	0.99	-	0	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	exon	2836668	2836964	.	-	.	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
Ledus.S4	AUGUSTUS	start_codon	2836962	2836964	.	-	0	transcript_id "Ledus.S4G038600.t1"; gene_id "Ledus.S4G038600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2664.t1 is derived from g97.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1448617	1452026	.	-	.	Ledus.S1G008500
Ledus.S1	AUGUSTUS	transcript	1448617	1452026	.	-	.	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	stop_codon	1448614	1448616	.	-	0	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	CDS	1448617	1449012	1	-	0	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	exon	1448617	1449012	.	-	.	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	intron	1449013	1449175	.	-	.	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	CDS	1449176	1449427	1	-	0	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	exon	1449176	1449427	.	-	.	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	intron	1449428	1449558	.	-	.	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	CDS	1449559	1449759	1	-	0	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	exon	1449559	1449759	.	-	.	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	intron	1449760	1449882	.	-	.	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	CDS	1449883	1450053	1	-	0	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	exon	1449883	1450053	.	-	.	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	intron	1450054	1450143	.	-	.	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	CDS	1450144	1450328	1	-	2	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	exon	1450144	1450328	.	-	.	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	intron	1450329	1450405	.	-	.	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	CDS	1450406	1452026	1	-	0	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	exon	1450406	1452026	.	-	.	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
Ledus.S1	AUGUSTUS	start_codon	1452024	1452026	.	-	0	transcript_id "Ledus.S1G008500.t1"; gene_id "Ledus.S1G008500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg313.t1 is derived from g7174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1586231	1588422	.	+	.	Ledus.S2G019500
Ledus.S2	AUGUSTUS	transcript	1586231	1588422	.	+	.	transcript_id "Ledus.S2G019500.t1"; gene_id "Ledus.S2G019500"
Ledus.S2	AUGUSTUS	start_codon	1586231	1586233	.	+	0	transcript_id "Ledus.S2G019500.t1"; gene_id "Ledus.S2G019500"
Ledus.S2	AUGUSTUS	CDS	1586231	1586368	0.67	+	0	transcript_id "Ledus.S2G019500.t1"; gene_id "Ledus.S2G019500"
Ledus.S2	AUGUSTUS	exon	1586231	1586368	.	+	.	transcript_id "Ledus.S2G019500.t1"; gene_id "Ledus.S2G019500"
Ledus.S2	AUGUSTUS	intron	1586369	1586550	.	+	.	transcript_id "Ledus.S2G019500.t1"; gene_id "Ledus.S2G019500"
Ledus.S2	AUGUSTUS	CDS	1586551	1586688	1	+	0	transcript_id "Ledus.S2G019500.t1"; gene_id "Ledus.S2G019500"
Ledus.S2	AUGUSTUS	exon	1586551	1586688	.	+	.	transcript_id "Ledus.S2G019500.t1"; gene_id "Ledus.S2G019500"
Ledus.S2	AUGUSTUS	intron	1586689	1586799	.	+	.	transcript_id "Ledus.S2G019500.t1"; gene_id "Ledus.S2G019500"
Ledus.S2	AUGUSTUS	CDS	1586800	1588422	0.9	+	0	transcript_id "Ledus.S2G019500.t1"; gene_id "Ledus.S2G019500"
Ledus.S2	AUGUSTUS	exon	1586800	1588422	.	+	.	transcript_id "Ledus.S2G019500.t1"; gene_id "Ledus.S2G019500"
Ledus.S2	AUGUSTUS	stop_codon	1588423	1588425	.	+	0	transcript_id "Ledus.S2G019500.t1"; gene_id "Ledus.S2G019500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5906.t1 is derived from g3349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27733609	27734830	.	-	.	Ledus.S1G332700
Ledus.S1	AUGUSTUS	transcript	27733609	27734830	.	-	.	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	stop_codon	27733606	27733608	.	-	0	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	CDS	27733609	27733767	0.89	-	0	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	exon	27733609	27733767	.	-	.	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	intron	27733768	27733899	.	-	.	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	CDS	27733900	27733984	1	-	1	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	exon	27733900	27733984	.	-	.	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	intron	27733985	27734094	.	-	.	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	CDS	27734095	27734366	0.94	-	0	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	exon	27734095	27734366	.	-	.	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	intron	27734367	27734481	.	-	.	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	CDS	27734482	27734604	0.99	-	0	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	exon	27734482	27734604	.	-	.	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	intron	27734605	27734716	.	-	.	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	CDS	27734717	27734830	0.56	-	0	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	exon	27734717	27734830	.	-	.	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
Ledus.S1	AUGUSTUS	start_codon	27734828	27734830	.	-	0	transcript_id "Ledus.S1G332700.t1"; gene_id "Ledus.S1G332700"
# This transcript jg7059.t2 is derived from g6590.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7059.t3 is derived from g6590.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7059.t4 is derived from g6590.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7060.t1 is derived from g6591.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1142913	1150573	.	-	.	Ledus.C7G012100
Ledus.C7	AUGUSTUS	transcript	1142913	1150573	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	stop_codon	1142910	1142912	.	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1142913	1142966	0.98	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1142913	1142966	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1142967	1143040	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1143041	1143136	0.98	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1143041	1143136	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1143137	1143246	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1143247	1143308	1	-	2	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1143247	1143308	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1143309	1143396	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1143397	1143461	1	-	1	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1143397	1143461	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1143462	1143553	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1143554	1143622	1	-	1	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1143554	1143622	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1143623	1143784	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1143785	1143877	1	-	1	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1143785	1143877	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1143878	1144003	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1144004	1144107	1	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1144004	1144107	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1144108	1144436	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1144437	1144517	1	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1144437	1144517	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1144518	1144672	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1144673	1144762	1	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1144673	1144762	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1144763	1144904	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1144905	1144956	1	-	1	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1144905	1144956	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1144957	1145038	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1145039	1145110	1	-	1	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1145039	1145110	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1145111	1145241	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1145242	1145317	1	-	2	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1145242	1145317	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1145318	1145397	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1145398	1145510	1	-	1	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1145398	1145510	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1145511	1145655	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1145656	1145803	1	-	2	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1145656	1145803	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1145804	1145946	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1145947	1146024	0.98	-	2	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1145947	1146024	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1146025	1146200	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1146201	1146330	0.66	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1146201	1146330	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1146331	1146429	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1146430	1146629	0.61	-	2	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1146430	1146629	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1146630	1146870	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1146871	1146928	0.99	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1146871	1146928	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1146929	1147042	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1147043	1147152	1	-	2	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1147043	1147152	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1147153	1147291	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1147292	1147440	0.47	-	1	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1147292	1147440	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1147441	1147841	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1147842	1147921	0.59	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1147842	1147921	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1147922	1148016	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1148017	1148088	1	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1148017	1148088	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1148089	1148190	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1148191	1148286	0.92	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1148191	1148286	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1148287	1148468	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1148469	1148612	1	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1148469	1148612	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1148613	1148724	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1148725	1148775	1	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1148725	1148775	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1148776	1149022	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1149023	1149133	1	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1149023	1149133	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1149134	1149303	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1149304	1149361	1	-	1	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1149304	1149361	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1149362	1149867	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1149868	1149934	1	-	2	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1149868	1149934	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1149935	1150020	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1150021	1150171	0.98	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1150021	1150171	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	intron	1150172	1150492	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	CDS	1150493	1150573	0.65	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	exon	1150493	1150573	.	-	.	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
Ledus.C7	AUGUSTUS	start_codon	1150571	1150573	.	-	0	transcript_id "Ledus.C7G012100.t1"; gene_id "Ledus.C7G012100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5369.t1 is derived from g2808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23769899	23770741	.	-	.	Ledus.S1G279000
Ledus.S1	AUGUSTUS	transcript	23769899	23770741	.	-	.	transcript_id "Ledus.S1G279000.t1"; gene_id "Ledus.S1G279000"
Ledus.S1	AUGUSTUS	stop_codon	23769896	23769898	.	-	0	transcript_id "Ledus.S1G279000.t1"; gene_id "Ledus.S1G279000"
Ledus.S1	AUGUSTUS	CDS	23769899	23770741	0.41	-	0	transcript_id "Ledus.S1G279000.t1"; gene_id "Ledus.S1G279000"
Ledus.S1	AUGUSTUS	exon	23769899	23770741	.	-	.	transcript_id "Ledus.S1G279000.t1"; gene_id "Ledus.S1G279000"
Ledus.S1	AUGUSTUS	start_codon	23770739	23770741	.	-	0	transcript_id "Ledus.S1G279000.t1"; gene_id "Ledus.S1G279000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6074.t1 is derived from g3517.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28819517	28821759	.	-	.	Ledus.S1G349500
Ledus.S1	AUGUSTUS	transcript	28819517	28821759	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	stop_codon	28819514	28819516	.	-	0	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	CDS	28819517	28819654	0.7	-	0	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	exon	28819517	28819654	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	intron	28819655	28819904	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	CDS	28819905	28820006	0.91	-	0	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	exon	28819905	28820006	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	intron	28820007	28820099	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	CDS	28820100	28820258	1	-	0	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	exon	28820100	28820258	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	intron	28820259	28820786	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	CDS	28820787	28820843	1	-	0	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	exon	28820787	28820843	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	intron	28820844	28820976	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	CDS	28820977	28821036	1	-	0	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	exon	28820977	28821036	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	intron	28821037	28821171	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	CDS	28821172	28821249	1	-	0	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	exon	28821172	28821249	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	intron	28821250	28821376	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	CDS	28821377	28821512	1	-	1	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	exon	28821377	28821512	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	intron	28821513	28821697	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	CDS	28821698	28821759	0.77	-	0	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	exon	28821698	28821759	.	-	.	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
Ledus.S1	AUGUSTUS	start_codon	28821757	28821759	.	-	0	transcript_id "Ledus.S1G349500.t1"; gene_id "Ledus.S1G349500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11301.t1 is derived from g4919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3468606	3470777	.	+	.	Ledus.S4G045700
Ledus.S4	AUGUSTUS	transcript	3468606	3470777	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	start_codon	3468606	3468608	.	+	0	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	CDS	3468606	3468619	0.87	+	0	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	exon	3468606	3468619	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	intron	3468620	3468710	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	CDS	3468711	3468831	1	+	1	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	exon	3468711	3468831	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	intron	3468832	3468920	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	CDS	3468921	3469016	1	+	0	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	exon	3468921	3469016	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	intron	3469017	3469130	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	CDS	3469131	3469193	0.94	+	0	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	exon	3469131	3469193	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	intron	3469194	3469271	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	CDS	3469272	3469370	0.78	+	0	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	exon	3469272	3469370	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	intron	3469371	3469645	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	CDS	3469646	3469705	1	+	0	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	exon	3469646	3469705	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	intron	3469706	3469812	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	CDS	3469813	3469916	1	+	0	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	exon	3469813	3469916	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	intron	3469917	3470146	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	CDS	3470147	3470228	1	+	1	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	exon	3470147	3470228	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	intron	3470229	3470514	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	CDS	3470515	3470595	0.85	+	0	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	exon	3470515	3470595	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	intron	3470596	3470708	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	CDS	3470709	3470777	0.21	+	0	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	exon	3470709	3470777	.	+	.	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
Ledus.S4	AUGUSTUS	stop_codon	3470778	3470780	.	+	0	transcript_id "Ledus.S4G045700.t1"; gene_id "Ledus.S4G045700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4828.t1 is derived from g2266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20011778	20012642	.	+	.	Ledus.S1G224900
Ledus.S1	AUGUSTUS	transcript	20011778	20012642	.	+	.	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	start_codon	20011778	20011780	.	+	0	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	CDS	20011778	20011967	0.99	+	0	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	exon	20011778	20011967	.	+	.	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	intron	20011968	20012089	.	+	.	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	CDS	20012090	20012225	0.83	+	2	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	exon	20012090	20012225	.	+	.	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	intron	20012226	20012333	.	+	.	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	CDS	20012334	20012444	0.58	+	1	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	exon	20012334	20012444	.	+	.	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	intron	20012445	20012593	.	+	.	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	CDS	20012594	20012642	0.53	+	1	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	exon	20012594	20012642	.	+	.	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
Ledus.S1	AUGUSTUS	stop_codon	20012643	20012645	.	+	0	transcript_id "Ledus.S1G224900.t1"; gene_id "Ledus.S1G224900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3225.t1 is derived from g660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6987225	6987929	.	-	.	Ledus.S1G064600
Ledus.S1	AUGUSTUS	transcript	6987225	6987929	.	-	.	transcript_id "Ledus.S1G064600.t1"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	stop_codon	6987222	6987224	.	-	0	transcript_id "Ledus.S1G064600.t1"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	CDS	6987225	6987347	1	-	0	transcript_id "Ledus.S1G064600.t1"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	exon	6987225	6987347	.	-	.	transcript_id "Ledus.S1G064600.t1"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	intron	6987348	6987580	.	-	.	transcript_id "Ledus.S1G064600.t1"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	CDS	6987581	6987691	1	-	0	transcript_id "Ledus.S1G064600.t1"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	exon	6987581	6987691	.	-	.	transcript_id "Ledus.S1G064600.t1"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	intron	6987692	6987773	.	-	.	transcript_id "Ledus.S1G064600.t1"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	CDS	6987774	6987929	0.96	-	0	transcript_id "Ledus.S1G064600.t1"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	exon	6987774	6987929	.	-	.	transcript_id "Ledus.S1G064600.t1"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	start_codon	6987927	6987929	.	-	0	transcript_id "Ledus.S1G064600.t1"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	transcript	6987225	6987929	.	-	.	transcript_id "Ledus.S1G064600.t2"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	stop_codon	6987222	6987224	.	-	0	transcript_id "Ledus.S1G064600.t2"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	CDS	6987225	6987347	0.76	-	0	transcript_id "Ledus.S1G064600.t2"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	exon	6987225	6987347	.	-	.	transcript_id "Ledus.S1G064600.t2"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	intron	6987348	6987567	.	-	.	transcript_id "Ledus.S1G064600.t2"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	CDS	6987568	6987666	0.33	-	0	transcript_id "Ledus.S1G064600.t2"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	exon	6987568	6987666	.	-	.	transcript_id "Ledus.S1G064600.t2"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	intron	6987667	6987773	.	-	.	transcript_id "Ledus.S1G064600.t2"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	CDS	6987774	6987929	0.32	-	0	transcript_id "Ledus.S1G064600.t2"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	exon	6987774	6987929	.	-	.	transcript_id "Ledus.S1G064600.t2"; gene_id "Ledus.S1G064600"
Ledus.S1	AUGUSTUS	start_codon	6987927	6987929	.	-	0	transcript_id "Ledus.S1G064600.t2"; gene_id "Ledus.S1G064600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11913.t1 is derived from g5532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7721294	7724647	.	+	.	Ledus.S4G106900
Ledus.S4	AUGUSTUS	transcript	7721294	7724647	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	start_codon	7721294	7721296	.	+	0	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7721294	7721570	0.69	+	0	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7721294	7721570	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	intron	7721571	7721968	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7721969	7722077	1	+	2	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7721969	7722077	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	intron	7722078	7722176	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7722177	7722244	1	+	1	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7722177	7722244	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	intron	7722245	7722326	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7722327	7722459	1	+	2	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7722327	7722459	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	intron	7722460	7722570	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7722571	7722670	1	+	1	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7722571	7722670	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	intron	7722671	7722790	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7722791	7722903	1	+	0	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7722791	7722903	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	intron	7722904	7723148	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7723149	7723242	1	+	1	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7723149	7723242	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	intron	7723243	7723354	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7723355	7723508	1	+	0	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7723355	7723508	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	intron	7723509	7723659	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7723660	7723806	1	+	2	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7723660	7723806	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	intron	7723807	7723897	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7723898	7723971	1	+	2	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7723898	7723971	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	intron	7723972	7724080	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7724081	7724169	1	+	0	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7724081	7724169	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	intron	7724170	7724263	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7724264	7724378	1	+	1	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7724264	7724378	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	intron	7724379	7724467	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	CDS	7724468	7724647	1	+	0	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	exon	7724468	7724647	.	+	.	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
Ledus.S4	AUGUSTUS	stop_codon	7724648	7724650	.	+	0	transcript_id "Ledus.S4G106900.t1"; gene_id "Ledus.S4G106900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7879.t1 is derived from g12550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7587972	7594184	.	+	.	Ledus.S5G065700
Ledus.S5	AUGUSTUS	transcript	7587972	7594184	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	start_codon	7587972	7587974	.	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7587972	7588348	0.84	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7587972	7588348	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7588349	7588578	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7588579	7588939	0.96	+	1	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7588579	7588939	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7588940	7589017	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7589018	7589242	0.96	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7589018	7589242	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7589243	7589331	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7589332	7589590	1	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7589332	7589590	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7589591	7589670	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7589671	7589858	1	+	2	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7589671	7589858	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7589859	7589954	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7589955	7590020	1	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7589955	7590020	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7590021	7590654	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7590655	7590816	0.4	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7590655	7590816	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7590817	7591869	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7591870	7592070	1	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7591870	7592070	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7592071	7592171	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7592172	7592283	0.98	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7592172	7592283	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7592284	7592395	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7592396	7592796	0.99	+	2	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7592396	7592796	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7592797	7592936	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7592937	7592969	0.4	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7592937	7592969	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7592970	7593111	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7593112	7593216	1	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7593112	7593216	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7593217	7593365	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7593366	7593440	1	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7593366	7593440	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7593441	7593531	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7593532	7593576	1	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7593532	7593576	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7593577	7593666	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7593667	7593795	0.96	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7593667	7593795	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7593796	7593920	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7593921	7594025	1	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7593921	7594025	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7594026	7594118	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7594119	7594184	1	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7594119	7594184	.	+	.	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	stop_codon	7594185	7594187	.	+	0	transcript_id "Ledus.S5G065700.t1"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	transcript	7587972	7594184	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	start_codon	7587972	7587974	.	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7587972	7588348	0.85	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7587972	7588348	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7588349	7588578	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7588579	7588939	1	+	1	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7588579	7588939	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7588940	7589017	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7589018	7589242	0.97	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7589018	7589242	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7589243	7589331	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7589332	7589590	1	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7589332	7589590	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7589591	7589661	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7589662	7589858	0.95	+	2	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7589662	7589858	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7589859	7589954	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7589955	7590020	0.99	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7589955	7590020	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7590021	7590654	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7590655	7590816	0.47	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7590655	7590816	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7590817	7591869	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7591870	7592070	1	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7591870	7592070	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7592071	7592171	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7592172	7592283	0.99	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7592172	7592283	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7592284	7592395	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7592396	7592796	1	+	2	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7592396	7592796	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7592797	7592936	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7592937	7592969	0.33	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7592937	7592969	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7592970	7593111	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7593112	7593216	1	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7593112	7593216	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7593217	7593365	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7593366	7593440	1	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7593366	7593440	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7593441	7593531	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7593532	7593576	1	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7593532	7593576	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7593577	7593666	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7593667	7593795	0.96	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7593667	7593795	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7593796	7593920	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7593921	7594025	1	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7593921	7594025	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	intron	7594026	7594118	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	CDS	7594119	7594184	1	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	exon	7594119	7594184	.	+	.	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
Ledus.S5	AUGUSTUS	stop_codon	7594185	7594187	.	+	0	transcript_id "Ledus.S5G065700.t2"; gene_id "Ledus.S5G065700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1736.t1 is derived from g8598.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12243615	12244013	.	-	.	Ledus.S2G161800
Ledus.S2	AUGUSTUS	transcript	12243615	12244013	.	-	.	transcript_id "Ledus.S2G161800.t1"; gene_id "Ledus.S2G161800"
Ledus.S2	AUGUSTUS	stop_codon	12243612	12243614	.	-	0	transcript_id "Ledus.S2G161800.t1"; gene_id "Ledus.S2G161800"
Ledus.S2	AUGUSTUS	CDS	12243615	12244013	0.84	-	0	transcript_id "Ledus.S2G161800.t1"; gene_id "Ledus.S2G161800"
Ledus.S2	AUGUSTUS	exon	12243615	12244013	.	-	.	transcript_id "Ledus.S2G161800.t1"; gene_id "Ledus.S2G161800"
Ledus.S2	AUGUSTUS	start_codon	12244011	12244013	.	-	0	transcript_id "Ledus.S2G161800.t1"; gene_id "Ledus.S2G161800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg802.t1 is derived from g7663.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5212825	5213953	.	-	.	Ledus.S2G068400
Ledus.S2	AUGUSTUS	transcript	5212825	5213953	.	-	.	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	stop_codon	5212822	5212824	.	-	0	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	CDS	5212825	5213036	0.89	-	2	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	exon	5212825	5213036	.	-	.	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	intron	5213037	5213112	.	-	.	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	CDS	5213113	5213239	0.78	-	0	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	exon	5213113	5213239	.	-	.	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	intron	5213240	5213344	.	-	.	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	CDS	5213345	5213584	0.96	-	0	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	exon	5213345	5213584	.	-	.	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	intron	5213585	5213692	.	-	.	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	CDS	5213693	5213953	0.57	-	0	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	exon	5213693	5213953	.	-	.	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
Ledus.S2	AUGUSTUS	start_codon	5213951	5213953	.	-	0	transcript_id "Ledus.S2G068400.t1"; gene_id "Ledus.S2G068400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8344.t1 is derived from g13016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10911029	10912100	.	-	.	Ledus.S5G112200
Ledus.S5	AUGUSTUS	transcript	10911029	10912100	.	-	.	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	stop_codon	10911026	10911028	.	-	0	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	CDS	10911029	10911128	1	-	1	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	exon	10911029	10911128	.	-	.	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	intron	10911129	10911194	.	-	.	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	CDS	10911195	10911337	0.84	-	0	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	exon	10911195	10911337	.	-	.	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	intron	10911338	10911625	.	-	.	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	CDS	10911626	10911883	0.53	-	0	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	exon	10911626	10911883	.	-	.	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	intron	10911884	10911995	.	-	.	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	CDS	10911996	10912100	0.75	-	0	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	exon	10911996	10912100	.	-	.	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
Ledus.S5	AUGUSTUS	start_codon	10912098	10912100	.	-	0	transcript_id "Ledus.S5G112200.t1"; gene_id "Ledus.S5G112200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3047.t1 is derived from g482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5509544	5510726	.	+	.	Ledus.S1G046800
Ledus.S1	AUGUSTUS	transcript	5509544	5510726	.	+	.	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	start_codon	5509544	5509546	.	+	0	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	CDS	5509544	5509563	0.55	+	0	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	exon	5509544	5509563	.	+	.	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	intron	5509564	5509659	.	+	.	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	CDS	5509660	5509731	0.55	+	1	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	exon	5509660	5509731	.	+	.	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	intron	5509732	5509961	.	+	.	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	CDS	5509962	5510052	0.49	+	1	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	exon	5509962	5510052	.	+	.	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	intron	5510053	5510136	.	+	.	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	CDS	5510137	5510177	1	+	0	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	exon	5510137	5510177	.	+	.	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	intron	5510178	5510653	.	+	.	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	CDS	5510654	5510726	1	+	1	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	exon	5510654	5510726	.	+	.	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	stop_codon	5510727	5510729	.	+	0	transcript_id "Ledus.S1G046800.t1"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	transcript	5509544	5510718	.	+	.	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	start_codon	5509544	5509546	.	+	0	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	CDS	5509544	5509563	0.43	+	0	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	exon	5509544	5509563	.	+	.	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	intron	5509564	5509659	.	+	.	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	CDS	5509660	5509731	0.42	+	1	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	exon	5509660	5509731	.	+	.	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	intron	5509732	5509961	.	+	.	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	CDS	5509962	5510052	0.37	+	1	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	exon	5509962	5510052	.	+	.	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	intron	5510053	5510136	.	+	.	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	CDS	5510137	5510177	0.99	+	0	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	exon	5510137	5510177	.	+	.	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	intron	5510178	5510334	.	+	.	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	CDS	5510335	5510444	0.98	+	1	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	exon	5510335	5510444	.	+	.	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	intron	5510445	5510653	.	+	.	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	CDS	5510654	5510718	1	+	2	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	exon	5510654	5510718	.	+	.	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
Ledus.S1	AUGUSTUS	stop_codon	5510719	5510721	.	+	0	transcript_id "Ledus.S1G046800.t2"; gene_id "Ledus.S1G046800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4331.t1 is derived from g1767.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16383914	16386645	.	+	.	Ledus.S1G175200
Ledus.S1	AUGUSTUS	transcript	16383914	16386645	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	start_codon	16383914	16383916	.	+	0	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16383914	16383944	0.98	+	0	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16383914	16383944	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16383945	16384024	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16384025	16384127	0.92	+	2	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16384025	16384127	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16384128	16384450	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16384451	16384533	0.93	+	1	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16384451	16384533	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16384534	16384639	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16384640	16384742	0.84	+	2	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16384640	16384742	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16384743	16384865	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16384866	16385141	0.96	+	1	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16384866	16385141	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16385142	16385231	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16385232	16385505	1	+	1	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16385232	16385505	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16385506	16385583	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16385584	16385934	1	+	0	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16385584	16385934	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16385935	16386021	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16386022	16386645	0.98	+	0	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16386022	16386645	.	+	.	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	stop_codon	16386646	16386648	.	+	0	transcript_id "Ledus.S1G175200.t1"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	transcript	16383939	16386645	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	start_codon	16383939	16383941	.	+	0	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16383939	16383944	0.26	+	0	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16383939	16383944	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16383945	16384109	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16384110	16384165	0.27	+	0	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16384110	16384165	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16384166	16384450	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16384451	16384533	0.91	+	1	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16384451	16384533	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16384534	16384639	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16384640	16384742	0.82	+	2	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16384640	16384742	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16384743	16384865	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16384866	16385141	0.96	+	1	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16384866	16385141	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16385142	16385231	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16385232	16385505	1	+	1	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16385232	16385505	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16385506	16385583	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16385584	16385934	1	+	0	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16385584	16385934	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	intron	16385935	16386021	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	CDS	16386022	16386645	0.99	+	0	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	exon	16386022	16386645	.	+	.	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
Ledus.S1	AUGUSTUS	stop_codon	16386646	16386648	.	+	0	transcript_id "Ledus.S1G175200.t2"; gene_id "Ledus.S1G175200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg45.t1 is derived from g9458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	81747	86037	.	+	.	Ledus.C8G000500
Ledus.C8	AUGUSTUS	transcript	81747	86037	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	start_codon	81747	81749	.	+	0	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	81747	81875	0.55	+	0	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	81747	81875	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	81876	82014	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	82015	82078	1	+	0	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	82015	82078	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	82079	82330	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	82331	82435	1	+	2	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	82331	82435	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	82436	82591	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	82592	82693	1	+	2	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	82592	82693	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	82694	82873	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	82874	82924	1	+	2	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	82874	82924	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	82925	83012	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	83013	83074	1	+	2	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	83013	83074	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	83075	83174	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	83175	83265	1	+	0	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	83175	83265	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	83266	83542	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	83543	83607	1	+	2	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	83543	83607	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	83608	83731	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	83732	83926	1	+	0	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	83732	83926	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	83927	84074	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	84075	84194	1	+	0	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	84075	84194	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	84195	84356	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	84357	84427	1	+	0	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	84357	84427	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	84428	84553	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	84554	84779	1	+	1	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	84554	84779	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	84780	85017	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	85018	85068	1	+	0	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	85018	85068	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	85069	85274	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	85275	85503	1	+	0	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	85275	85503	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	85504	85681	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	85682	85821	1	+	2	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	85682	85821	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	intron	85822	85911	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	CDS	85912	86037	0.8	+	0	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	exon	85912	86037	.	+	.	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
Ledus.C8	AUGUSTUS	stop_codon	86038	86040	.	+	0	transcript_id "Ledus.C8G000500.t1"; gene_id "Ledus.C8G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg140.t1 is derived from g7001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	253842	255638	.	+	.	Ledus.S2G002200
Ledus.S2	AUGUSTUS	transcript	253842	255638	.	+	.	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	start_codon	253842	253844	.	+	0	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	CDS	253842	254666	0.7	+	0	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	exon	253842	254666	.	+	.	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	intron	254667	254752	.	+	.	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	CDS	254753	254878	1	+	0	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	exon	254753	254878	.	+	.	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	intron	254879	254975	.	+	.	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	CDS	254976	255380	1	+	0	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	exon	254976	255380	.	+	.	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	intron	255381	255470	.	+	.	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	CDS	255471	255638	1	+	0	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	exon	255471	255638	.	+	.	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
Ledus.S2	AUGUSTUS	stop_codon	255639	255641	.	+	0	transcript_id "Ledus.S2G002200.t1"; gene_id "Ledus.S2G002200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6716.t1 is derived from g4159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33501966	33503255	.	-	.	Ledus.S1G413700
Ledus.S1	AUGUSTUS	transcript	33501966	33503255	.	-	.	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	stop_codon	33501963	33501965	.	-	0	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	CDS	33501966	33501977	0.93	-	0	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	exon	33501966	33501977	.	-	.	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	intron	33501978	33502063	.	-	.	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	CDS	33502064	33502578	1	-	2	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	exon	33502064	33502578	.	-	.	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	intron	33502579	33502657	.	-	.	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	CDS	33502658	33502695	1	-	1	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	exon	33502658	33502695	.	-	.	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	intron	33502696	33502805	.	-	.	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	CDS	33502806	33502985	1	-	1	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	exon	33502806	33502985	.	-	.	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	intron	33502986	33503196	.	-	.	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	CDS	33503197	33503255	0.93	-	0	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	exon	33503197	33503255	.	-	.	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
Ledus.S1	AUGUSTUS	start_codon	33503253	33503255	.	-	0	transcript_id "Ledus.S1G413700.t1"; gene_id "Ledus.S1G413700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9650.t1 is derived from g10680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8776259	8776867	.	-	.	Ledus.S3G112700
Ledus.S3	AUGUSTUS	transcript	8776259	8776867	.	-	.	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	stop_codon	8776256	8776258	.	-	0	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	CDS	8776259	8776395	1	-	2	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	exon	8776259	8776395	.	-	.	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	intron	8776396	8776495	.	-	.	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	CDS	8776496	8776568	0.74	-	0	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	exon	8776496	8776568	.	-	.	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	intron	8776569	8776679	.	-	.	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	CDS	8776680	8776729	0.52	-	2	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	exon	8776680	8776729	.	-	.	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	intron	8776730	8776839	.	-	.	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	CDS	8776840	8776867	0.88	-	0	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	exon	8776840	8776867	.	-	.	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
Ledus.S3	AUGUSTUS	start_codon	8776865	8776867	.	-	0	transcript_id "Ledus.S3G112700.t1"; gene_id "Ledus.S3G112700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4871.t1 is derived from g2309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20448834	20451376	.	+	.	Ledus.S1G229200
Ledus.S1	AUGUSTUS	transcript	20448834	20451376	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	start_codon	20448834	20448836	.	+	0	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	CDS	20448834	20448924	0.77	+	0	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	exon	20448834	20448924	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	intron	20448925	20449151	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	CDS	20449152	20449294	1	+	2	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	exon	20449152	20449294	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	intron	20449295	20449372	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	CDS	20449373	20449570	0.56	+	0	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	exon	20449373	20449570	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	intron	20449571	20449677	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	CDS	20449678	20449798	0.96	+	0	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	exon	20449678	20449798	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	intron	20449799	20450081	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	CDS	20450082	20450293	1	+	2	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	exon	20450082	20450293	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	intron	20450294	20450386	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	CDS	20450387	20450566	1	+	0	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	exon	20450387	20450566	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	intron	20450567	20450653	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	CDS	20450654	20450842	1	+	0	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	exon	20450654	20450842	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	intron	20450843	20450950	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	CDS	20450951	20451039	1	+	0	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	exon	20450951	20451039	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	intron	20451040	20451123	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	CDS	20451124	20451376	1	+	1	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	exon	20451124	20451376	.	+	.	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
Ledus.S1	AUGUSTUS	stop_codon	20451377	20451379	.	+	0	transcript_id "Ledus.S1G229200.t1"; gene_id "Ledus.S1G229200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8682.t1 is derived from g9712.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1341652	1342535	.	-	.	Ledus.S3G015900
Ledus.S3	AUGUSTUS	transcript	1341652	1342535	.	-	.	transcript_id "Ledus.S3G015900.t1"; gene_id "Ledus.S3G015900"
Ledus.S3	AUGUSTUS	stop_codon	1341649	1341651	.	-	0	transcript_id "Ledus.S3G015900.t1"; gene_id "Ledus.S3G015900"
Ledus.S3	AUGUSTUS	CDS	1341652	1341821	1	-	2	transcript_id "Ledus.S3G015900.t1"; gene_id "Ledus.S3G015900"
Ledus.S3	AUGUSTUS	exon	1341652	1341821	.	-	.	transcript_id "Ledus.S3G015900.t1"; gene_id "Ledus.S3G015900"
Ledus.S3	AUGUSTUS	intron	1341822	1341947	.	-	.	transcript_id "Ledus.S3G015900.t1"; gene_id "Ledus.S3G015900"
Ledus.S3	AUGUSTUS	CDS	1341948	1341965	1	-	2	transcript_id "Ledus.S3G015900.t1"; gene_id "Ledus.S3G015900"
Ledus.S3	AUGUSTUS	exon	1341948	1341965	.	-	.	transcript_id "Ledus.S3G015900.t1"; gene_id "Ledus.S3G015900"
Ledus.S3	AUGUSTUS	intron	1341966	1342132	.	-	.	transcript_id "Ledus.S3G015900.t1"; gene_id "Ledus.S3G015900"
Ledus.S3	AUGUSTUS	CDS	1342133	1342535	0.96	-	0	transcript_id "Ledus.S3G015900.t1"; gene_id "Ledus.S3G015900"
Ledus.S3	AUGUSTUS	exon	1342133	1342535	.	-	.	transcript_id "Ledus.S3G015900.t1"; gene_id "Ledus.S3G015900"
Ledus.S3	AUGUSTUS	start_codon	1342533	1342535	.	-	0	transcript_id "Ledus.S3G015900.t1"; gene_id "Ledus.S3G015900"
# This transcript jg12442.t2 is derived from g6063.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12443.t1 is derived from g6064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12026874	12028732	.	-	.	Ledus.S4G159900
Ledus.S4	AUGUSTUS	transcript	12026874	12028732	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	stop_codon	12026871	12026873	.	-	0	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	CDS	12026874	12026921	0.41	-	0	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	exon	12026874	12026921	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	intron	12026922	12027221	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	CDS	12027222	12027363	0.41	-	1	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	exon	12027222	12027363	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	intron	12027364	12027638	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	CDS	12027639	12027712	0.41	-	0	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	exon	12027639	12027712	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	intron	12027713	12027807	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	CDS	12027808	12027840	0.4	-	0	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	exon	12027808	12027840	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	intron	12027841	12027946	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	CDS	12027947	12028142	0.96	-	1	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	exon	12027947	12028142	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	intron	12028143	12028254	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	CDS	12028255	12028502	0.99	-	0	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	exon	12028255	12028502	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	intron	12028503	12028582	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	CDS	12028583	12028732	0.99	-	0	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	exon	12028583	12028732	.	-	.	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
Ledus.S4	AUGUSTUS	start_codon	12028730	12028732	.	-	0	transcript_id "Ledus.S4G159900.t1"; gene_id "Ledus.S4G159900"
# This transcript jg11831.t2 is derived from g5450.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11832.t1 is derived from g5451.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7151787	7151996	.	+	.	Ledus.S4G098800
Ledus.S4	AUGUSTUS	transcript	7151787	7151996	.	+	.	transcript_id "Ledus.S4G098800.t1"; gene_id "Ledus.S4G098800"
Ledus.S4	AUGUSTUS	start_codon	7151787	7151789	.	+	0	transcript_id "Ledus.S4G098800.t1"; gene_id "Ledus.S4G098800"
Ledus.S4	AUGUSTUS	CDS	7151787	7151996	0.99	+	0	transcript_id "Ledus.S4G098800.t1"; gene_id "Ledus.S4G098800"
Ledus.S4	AUGUSTUS	exon	7151787	7151996	.	+	.	transcript_id "Ledus.S4G098800.t1"; gene_id "Ledus.S4G098800"
Ledus.S4	AUGUSTUS	stop_codon	7151997	7151999	.	+	0	transcript_id "Ledus.S4G098800.t1"; gene_id "Ledus.S4G098800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9687.t1 is derived from g10717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9008517	9009642	.	+	.	Ledus.S3G116400
Ledus.S3	AUGUSTUS	transcript	9008517	9009642	.	+	.	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	start_codon	9008517	9008519	.	+	0	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	CDS	9008517	9008555	0.86	+	0	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	exon	9008517	9008555	.	+	.	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	intron	9008556	9008675	.	+	.	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	CDS	9008676	9008778	1	+	0	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	exon	9008676	9008778	.	+	.	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	intron	9008779	9008864	.	+	.	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	CDS	9008865	9008940	1	+	2	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	exon	9008865	9008940	.	+	.	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	intron	9008941	9009108	.	+	.	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	CDS	9009109	9009190	1	+	1	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	exon	9009109	9009190	.	+	.	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	intron	9009191	9009312	.	+	.	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	CDS	9009313	9009408	0.99	+	0	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	exon	9009313	9009408	.	+	.	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	intron	9009409	9009492	.	+	.	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	CDS	9009493	9009642	0.83	+	0	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	exon	9009493	9009642	.	+	.	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
Ledus.S3	AUGUSTUS	stop_codon	9009643	9009645	.	+	0	transcript_id "Ledus.S3G116400.t1"; gene_id "Ledus.S3G116400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1654.t1 is derived from g8515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11725022	11727822	.	-	.	Ledus.S2G153600
Ledus.S2	AUGUSTUS	transcript	11725022	11727822	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	stop_codon	11725019	11725021	.	-	0	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	CDS	11725022	11725062	0.9	-	2	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	exon	11725022	11725062	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	intron	11725063	11725251	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	CDS	11725252	11725296	0.88	-	2	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	exon	11725252	11725296	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	intron	11725297	11725386	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	CDS	11725387	11725454	0.63	-	1	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	exon	11725387	11725454	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	intron	11725455	11725558	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	CDS	11725559	11725629	0.99	-	0	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	exon	11725559	11725629	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	intron	11725630	11725728	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	CDS	11725729	11725866	1	-	0	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	exon	11725729	11725866	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	intron	11725867	11725957	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	CDS	11725958	11726194	0.94	-	0	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	exon	11725958	11726194	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	intron	11726195	11726309	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	CDS	11726310	11726980	0.8	-	2	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	exon	11726310	11726980	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	intron	11726981	11727155	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	CDS	11727156	11727450	0.97	-	0	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	exon	11727156	11727450	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	intron	11727451	11727582	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	CDS	11727583	11727822	0.5	-	0	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	exon	11727583	11727822	.	-	.	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
Ledus.S2	AUGUSTUS	start_codon	11727820	11727822	.	-	0	transcript_id "Ledus.S2G153600.t1"; gene_id "Ledus.S2G153600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2258.t1 is derived from g9121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16595688	16596125	.	-	.	Ledus.S2G214000
Ledus.S2	AUGUSTUS	transcript	16595688	16596125	.	-	.	transcript_id "Ledus.S2G214000.t1"; gene_id "Ledus.S2G214000"
Ledus.S2	AUGUSTUS	stop_codon	16595685	16595687	.	-	0	transcript_id "Ledus.S2G214000.t1"; gene_id "Ledus.S2G214000"
Ledus.S2	AUGUSTUS	CDS	16595688	16595729	0.64	-	0	transcript_id "Ledus.S2G214000.t1"; gene_id "Ledus.S2G214000"
Ledus.S2	AUGUSTUS	exon	16595688	16595729	.	-	.	transcript_id "Ledus.S2G214000.t1"; gene_id "Ledus.S2G214000"
Ledus.S2	AUGUSTUS	intron	16595730	16595876	.	-	.	transcript_id "Ledus.S2G214000.t1"; gene_id "Ledus.S2G214000"
Ledus.S2	AUGUSTUS	CDS	16595877	16596125	0.49	-	0	transcript_id "Ledus.S2G214000.t1"; gene_id "Ledus.S2G214000"
Ledus.S2	AUGUSTUS	exon	16595877	16596125	.	-	.	transcript_id "Ledus.S2G214000.t1"; gene_id "Ledus.S2G214000"
Ledus.S2	AUGUSTUS	start_codon	16596123	16596125	.	-	0	transcript_id "Ledus.S2G214000.t1"; gene_id "Ledus.S2G214000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg5397.t1 is derived from g2836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23989570	23991930	.	+	.	Ledus.S1G281800
Ledus.S1	AUGUSTUS	transcript	23989570	23991736	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	start_codon	23989570	23989572	.	+	0	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23989570	23990085	0.83	+	0	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23989570	23990085	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990086	23990231	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990232	23990285	1	+	0	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990232	23990285	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990286	23990400	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990401	23990550	1	+	0	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990401	23990550	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990551	23990674	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990675	23990843	0.88	+	0	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990675	23990843	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990844	23990962	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990963	23991054	0.99	+	2	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990963	23991054	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23991055	23991132	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23991133	23991236	1	+	0	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23991133	23991236	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23991237	23991313	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23991314	23991586	0.98	+	1	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23991314	23991586	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23991587	23991681	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23991682	23991736	0.98	+	1	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23991682	23991736	.	+	.	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	stop_codon	23991737	23991739	.	+	0	transcript_id "Ledus.S1G281800.t1"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	transcript	23989570	23991930	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	start_codon	23989570	23989572	.	+	0	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23989570	23990085	0.95	+	0	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23989570	23990085	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990086	23990231	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990232	23990285	1	+	0	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990232	23990285	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990286	23990400	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990401	23990550	1	+	0	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990401	23990550	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990551	23990674	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990675	23990843	0.91	+	0	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990675	23990843	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990844	23990962	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990963	23991054	0.97	+	2	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990963	23991054	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23991055	23991132	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23991133	23991236	1	+	0	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23991133	23991236	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23991237	23991313	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23991314	23991586	1	+	1	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23991314	23991586	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23991587	23991668	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23991669	23991930	0.55	+	1	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23991669	23991930	.	+	.	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	stop_codon	23991931	23991933	.	+	0	transcript_id "Ledus.S1G281800.t2"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	transcript	23989570	23991736	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	start_codon	23989570	23989572	.	+	0	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23989570	23990013	0.41	+	0	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23989570	23990013	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990014	23990074	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990075	23990085	0.5	+	0	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990075	23990085	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990086	23990224	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990225	23990285	0.51	+	1	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990225	23990285	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990286	23990400	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990401	23990550	0.53	+	0	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990401	23990550	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990551	23990674	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990675	23990843	0.9	+	0	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990675	23990843	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23990844	23990962	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23990963	23991054	0.98	+	2	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23990963	23991054	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23991055	23991132	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23991133	23991236	1	+	0	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23991133	23991236	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23991237	23991313	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23991314	23991586	0.96	+	1	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23991314	23991586	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	intron	23991587	23991681	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	CDS	23991682	23991736	0.67	+	1	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	exon	23991682	23991736	.	+	.	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
Ledus.S1	AUGUSTUS	stop_codon	23991737	23991739	.	+	0	transcript_id "Ledus.S1G281800.t3"; gene_id "Ledus.S1G281800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6515.t1 is derived from g3958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31824630	31825955	.	-	.	Ledus.S1G393600
Ledus.S1	AUGUSTUS	transcript	31824630	31825955	.	-	.	transcript_id "Ledus.S1G393600.t1"; gene_id "Ledus.S1G393600"
Ledus.S1	AUGUSTUS	stop_codon	31824627	31824629	.	-	0	transcript_id "Ledus.S1G393600.t1"; gene_id "Ledus.S1G393600"
Ledus.S1	AUGUSTUS	CDS	31824630	31825955	0.98	-	0	transcript_id "Ledus.S1G393600.t1"; gene_id "Ledus.S1G393600"
Ledus.S1	AUGUSTUS	exon	31824630	31825955	.	-	.	transcript_id "Ledus.S1G393600.t1"; gene_id "Ledus.S1G393600"
Ledus.S1	AUGUSTUS	start_codon	31825953	31825955	.	-	0	transcript_id "Ledus.S1G393600.t1"; gene_id "Ledus.S1G393600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3145.t1 is derived from g580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6249198	6250324	.	-	.	Ledus.S1G056600
Ledus.S1	AUGUSTUS	transcript	6249198	6250324	.	-	.	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	stop_codon	6249195	6249197	.	-	0	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	CDS	6249198	6249359	0.64	-	0	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	exon	6249198	6249359	.	-	.	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	intron	6249360	6249488	.	-	.	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	CDS	6249489	6249593	1	-	0	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	exon	6249489	6249593	.	-	.	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	intron	6249594	6249703	.	-	.	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	CDS	6249704	6249765	0.88	-	2	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	exon	6249704	6249765	.	-	.	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	intron	6249766	6249900	.	-	.	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	CDS	6249901	6250089	0.61	-	2	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	exon	6249901	6250089	.	-	.	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	intron	6250090	6250272	.	-	.	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	CDS	6250273	6250324	0.74	-	0	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	exon	6250273	6250324	.	-	.	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
Ledus.S1	AUGUSTUS	start_codon	6250322	6250324	.	-	0	transcript_id "Ledus.S1G056600.t1"; gene_id "Ledus.S1G056600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3045.t1 is derived from g480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5486790	5489005	.	-	.	Ledus.S1G046600
Ledus.S1	AUGUSTUS	transcript	5486790	5489005	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	stop_codon	5486787	5486789	.	-	0	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	CDS	5486790	5486988	0.99	-	1	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	exon	5486790	5486988	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	intron	5486989	5487110	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	CDS	5487111	5487238	0.98	-	0	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	exon	5487111	5487238	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	intron	5487239	5487318	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	CDS	5487319	5487714	1	-	0	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	exon	5487319	5487714	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	intron	5487715	5487869	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	CDS	5487870	5487975	1	-	1	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	exon	5487870	5487975	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	intron	5487976	5488108	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	CDS	5488109	5488191	1	-	0	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	exon	5488109	5488191	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	intron	5488192	5488284	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	CDS	5488285	5488412	1	-	2	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	exon	5488285	5488412	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	intron	5488413	5488496	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	CDS	5488497	5488567	0.99	-	1	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	exon	5488497	5488567	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	intron	5488568	5488668	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	CDS	5488669	5488720	0.99	-	2	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	exon	5488669	5488720	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	intron	5488721	5488950	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	CDS	5488951	5489005	0.89	-	0	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	exon	5488951	5489005	.	-	.	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
Ledus.S1	AUGUSTUS	start_codon	5489003	5489005	.	-	0	transcript_id "Ledus.S1G046600.t1"; gene_id "Ledus.S1G046600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10518.t1 is derived from g11548.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15784382	15784882	.	-	.	Ledus.S3G199500
Ledus.S3	AUGUSTUS	transcript	15784382	15784882	.	-	.	transcript_id "Ledus.S3G199500.t1"; gene_id "Ledus.S3G199500"
Ledus.S3	AUGUSTUS	stop_codon	15784379	15784381	.	-	0	transcript_id "Ledus.S3G199500.t1"; gene_id "Ledus.S3G199500"
Ledus.S3	AUGUSTUS	CDS	15784382	15784882	0.36	-	0	transcript_id "Ledus.S3G199500.t1"; gene_id "Ledus.S3G199500"
Ledus.S3	AUGUSTUS	exon	15784382	15784882	.	-	.	transcript_id "Ledus.S3G199500.t1"; gene_id "Ledus.S3G199500"
Ledus.S3	AUGUSTUS	start_codon	15784880	15784882	.	-	0	transcript_id "Ledus.S3G199500.t1"; gene_id "Ledus.S3G199500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11901.t1 is derived from g5520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7598318	7603682	.	+	.	Ledus.S4G105700
Ledus.S4	AUGUSTUS	transcript	7598318	7603682	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	start_codon	7598318	7598320	.	+	0	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	CDS	7598318	7598950	0.91	+	0	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	exon	7598318	7598950	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	intron	7598951	7599030	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	CDS	7599031	7599085	1	+	0	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	exon	7599031	7599085	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	intron	7599086	7599562	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	CDS	7599563	7599741	1	+	2	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	exon	7599563	7599741	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	intron	7599742	7599816	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	CDS	7599817	7600274	1	+	0	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	exon	7599817	7600274	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	intron	7600275	7600350	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	CDS	7600351	7600580	1	+	1	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	exon	7600351	7600580	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	intron	7600581	7600668	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	CDS	7600669	7602005	1	+	2	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	exon	7600669	7602005	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	intron	7602006	7602085	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	CDS	7602086	7603083	1	+	0	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	exon	7602086	7603083	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	intron	7603084	7603166	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	CDS	7603167	7603443	0.29	+	1	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	exon	7603167	7603443	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	intron	7603444	7603523	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	CDS	7603524	7603541	0.56	+	0	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	exon	7603524	7603541	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	intron	7603542	7603622	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	CDS	7603623	7603682	0.59	+	0	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	exon	7603623	7603682	.	+	.	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
Ledus.S4	AUGUSTUS	stop_codon	7603683	7603685	.	+	0	transcript_id "Ledus.S4G105700.t1"; gene_id "Ledus.S4G105700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13161.t1 is derived from g6971.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7699529	7699825	.	-	.	Ledus.S6G022300
Ledus.S6	AUGUSTUS	transcript	7699529	7699825	.	-	.	transcript_id "Ledus.S6G022300.t1"; gene_id "Ledus.S6G022300"
Ledus.S6	AUGUSTUS	stop_codon	7699526	7699528	.	-	0	transcript_id "Ledus.S6G022300.t1"; gene_id "Ledus.S6G022300"
Ledus.S6	AUGUSTUS	CDS	7699529	7699825	0.98	-	0	transcript_id "Ledus.S6G022300.t1"; gene_id "Ledus.S6G022300"
Ledus.S6	AUGUSTUS	exon	7699529	7699825	.	-	.	transcript_id "Ledus.S6G022300.t1"; gene_id "Ledus.S6G022300"
Ledus.S6	AUGUSTUS	start_codon	7699823	7699825	.	-	0	transcript_id "Ledus.S6G022300.t1"; gene_id "Ledus.S6G022300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3870.t1 is derived from g1306.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13276459	13283567	.	-	.	Ledus.S1G129100
Ledus.S1	AUGUSTUS	transcript	13276459	13283567	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	stop_codon	13276456	13276458	.	-	0	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13276459	13276690	0.96	-	1	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13276459	13276690	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13276691	13277086	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13277087	13277229	0.98	-	0	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13277087	13277229	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13277230	13277335	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13277336	13277446	1	-	0	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13277336	13277446	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13277447	13277582	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13277583	13277732	1	-	0	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13277583	13277732	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13277733	13277851	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13277852	13281823	0.35	-	0	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13277852	13281823	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13281824	13282000	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13282001	13282042	1	-	0	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13282001	13282042	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13282043	13282133	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13282134	13282320	1	-	1	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13282134	13282320	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13282321	13282499	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13282500	13282537	1	-	0	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13282500	13282537	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13282538	13282811	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13282812	13282934	0.88	-	0	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13282812	13282934	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13282935	13283035	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13283036	13283236	0.73	-	0	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13283036	13283236	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13283237	13283489	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13283490	13283567	0.54	-	0	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13283490	13283567	.	-	.	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	start_codon	13283565	13283567	.	-	0	transcript_id "Ledus.S1G129100.t1"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	transcript	13276459	13283567	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	stop_codon	13276456	13276458	.	-	0	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13276459	13276690	0.98	-	1	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13276459	13276690	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13276691	13277086	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13277087	13277229	0.94	-	0	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13277087	13277229	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13277230	13277335	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13277336	13277446	1	-	0	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13277336	13277446	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13277447	13277582	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13277583	13277732	1	-	0	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13277583	13277732	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13277733	13277851	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13277852	13281823	0.37	-	0	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13277852	13281823	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13281824	13282000	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13282001	13282042	1	-	0	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13282001	13282042	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13282043	13282133	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13282134	13282320	1	-	1	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13282134	13282320	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13282321	13282499	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13282500	13282537	1	-	0	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13282500	13282537	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13282538	13282811	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13282812	13282923	0.46	-	1	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13282812	13282923	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13282924	13283149	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13283150	13283223	0.34	-	0	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13283150	13283223	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	intron	13283224	13283489	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	CDS	13283490	13283567	0.45	-	0	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	exon	13283490	13283567	.	-	.	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
Ledus.S1	AUGUSTUS	start_codon	13283565	13283567	.	-	0	transcript_id "Ledus.S1G129100.t2"; gene_id "Ledus.S1G129100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1283.t1 is derived from g8144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9043086	9046222	.	+	.	Ledus.S2G116500
Ledus.S2	AUGUSTUS	transcript	9043086	9046222	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	start_codon	9043086	9043088	.	+	0	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9043086	9043203	0.96	+	0	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9043086	9043203	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9043204	9043280	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9043281	9043423	0.9	+	2	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9043281	9043423	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9043424	9043526	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9043527	9043607	0.99	+	0	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9043527	9043607	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9043608	9043701	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9043702	9043850	0.97	+	0	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9043702	9043850	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9043851	9043961	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9043962	9044054	0.97	+	1	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9043962	9044054	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9044055	9044144	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9044145	9044268	1	+	1	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9044145	9044268	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9044269	9044344	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9044345	9044410	1	+	0	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9044345	9044410	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9044411	9044500	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9044501	9044567	1	+	0	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9044501	9044567	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9044568	9044669	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9044670	9044746	0.8	+	2	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9044670	9044746	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9044747	9044840	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9044841	9044954	1	+	0	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9044841	9044954	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9044955	9045045	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9045046	9045123	1	+	0	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9045046	9045123	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9045124	9045194	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9045195	9045346	1	+	0	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9045195	9045346	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9045347	9045426	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9045427	9045487	1	+	1	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9045427	9045487	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9045488	9045584	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9045585	9045691	1	+	0	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9045585	9045691	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9045692	9045779	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9045780	9045842	1	+	1	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9045780	9045842	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	intron	9045843	9046206	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	CDS	9046207	9046222	1	+	1	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	exon	9046207	9046222	.	+	.	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
Ledus.S2	AUGUSTUS	stop_codon	9046223	9046225	.	+	0	transcript_id "Ledus.S2G116500.t1"; gene_id "Ledus.S2G116500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9043.t1 is derived from g10073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4078933	4079381	.	+	.	Ledus.S3G052000
Ledus.S3	AUGUSTUS	transcript	4078933	4079381	.	+	.	transcript_id "Ledus.S3G052000.t1"; gene_id "Ledus.S3G052000"
Ledus.S3	AUGUSTUS	start_codon	4078933	4078935	.	+	0	transcript_id "Ledus.S3G052000.t1"; gene_id "Ledus.S3G052000"
Ledus.S3	AUGUSTUS	CDS	4078933	4079169	0.65	+	0	transcript_id "Ledus.S3G052000.t1"; gene_id "Ledus.S3G052000"
Ledus.S3	AUGUSTUS	exon	4078933	4079169	.	+	.	transcript_id "Ledus.S3G052000.t1"; gene_id "Ledus.S3G052000"
Ledus.S3	AUGUSTUS	intron	4079170	4079348	.	+	.	transcript_id "Ledus.S3G052000.t1"; gene_id "Ledus.S3G052000"
Ledus.S3	AUGUSTUS	CDS	4079349	4079381	0.37	+	0	transcript_id "Ledus.S3G052000.t1"; gene_id "Ledus.S3G052000"
Ledus.S3	AUGUSTUS	exon	4079349	4079381	.	+	.	transcript_id "Ledus.S3G052000.t1"; gene_id "Ledus.S3G052000"
Ledus.S3	AUGUSTUS	stop_codon	4079382	4079384	.	+	0	transcript_id "Ledus.S3G052000.t1"; gene_id "Ledus.S3G052000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1327.t1 is derived from g8188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9289536	9291228	.	+	.	Ledus.S2G120900
Ledus.S2	AUGUSTUS	transcript	9289536	9291228	.	+	.	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	start_codon	9289536	9289538	.	+	0	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	CDS	9289536	9290099	0.98	+	0	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	exon	9289536	9290099	.	+	.	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	intron	9290100	9290191	.	+	.	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	CDS	9290192	9290485	0.81	+	0	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	exon	9290192	9290485	.	+	.	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	intron	9290486	9290603	.	+	.	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	CDS	9290604	9290699	1	+	0	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	exon	9290604	9290699	.	+	.	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	intron	9290700	9290796	.	+	.	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	CDS	9290797	9291228	1	+	0	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	exon	9290797	9291228	.	+	.	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
Ledus.S2	AUGUSTUS	stop_codon	9291229	9291231	.	+	0	transcript_id "Ledus.S2G120900.t1"; gene_id "Ledus.S2G120900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1621.t1 is derived from g8482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11460901	11462487	.	-	.	Ledus.S2G150300
Ledus.S2	AUGUSTUS	transcript	11460901	11462487	.	-	.	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	stop_codon	11460898	11460900	.	-	0	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	CDS	11460901	11461086	0.53	-	0	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	exon	11460901	11461086	.	-	.	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	intron	11461087	11461187	.	-	.	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	CDS	11461188	11461394	0.85	-	0	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	exon	11461188	11461394	.	-	.	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	intron	11461395	11461517	.	-	.	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	CDS	11461518	11461691	1	-	0	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	exon	11461518	11461691	.	-	.	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	intron	11461692	11461794	.	-	.	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	CDS	11461795	11462487	0.61	-	0	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	exon	11461795	11462487	.	-	.	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
Ledus.S2	AUGUSTUS	start_codon	11462485	11462487	.	-	0	transcript_id "Ledus.S2G150300.t1"; gene_id "Ledus.S2G150300"
# This transcript jg10343.t2 is derived from g11373.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10344.t1 is derived from g11374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14334245	14337536	.	+	.	Ledus.S3G182100
Ledus.S3	AUGUSTUS	transcript	14334245	14337536	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	start_codon	14334245	14334247	.	+	0	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	CDS	14334245	14334345	0.99	+	0	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	exon	14334245	14334345	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	intron	14334346	14334425	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	CDS	14334426	14334496	1	+	1	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	exon	14334426	14334496	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	intron	14334497	14334581	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	CDS	14334582	14334706	1	+	2	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	exon	14334582	14334706	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	intron	14334707	14334841	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	CDS	14334842	14334886	1	+	0	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	exon	14334842	14334886	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	intron	14334887	14334977	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	CDS	14334978	14335080	1	+	0	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	exon	14334978	14335080	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	intron	14335081	14335157	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	CDS	14335158	14335267	1	+	2	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	exon	14335158	14335267	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	intron	14335268	14335358	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	CDS	14335359	14335468	0.99	+	0	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	exon	14335359	14335468	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	intron	14335469	14335563	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	CDS	14335564	14335690	0.83	+	1	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	exon	14335564	14335690	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	intron	14335691	14335829	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	CDS	14335830	14336279	1	+	0	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	exon	14335830	14336279	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	intron	14336280	14336376	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	CDS	14336377	14336504	0.99	+	0	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	exon	14336377	14336504	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	intron	14336505	14336606	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	CDS	14336607	14336937	0.99	+	1	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	exon	14336607	14336937	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	intron	14336938	14337035	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	CDS	14337036	14337536	1	+	0	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	exon	14337036	14337536	.	+	.	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
Ledus.S3	AUGUSTUS	stop_codon	14337537	14337539	.	+	0	transcript_id "Ledus.S3G182100.t1"; gene_id "Ledus.S3G182100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3222.t1 is derived from g657.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6981507	6984112	.	-	.	Ledus.S1G064300
Ledus.S1	AUGUSTUS	transcript	6981507	6984112	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	stop_codon	6981504	6981506	.	-	0	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6981507	6981512	0.99	-	0	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6981507	6981512	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	intron	6981513	6981763	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6981764	6981822	0.64	-	2	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6981764	6981822	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	intron	6981823	6981929	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6981930	6982014	0.61	-	0	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6981930	6982014	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	intron	6982015	6982098	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6982099	6982143	1	-	0	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6982099	6982143	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	intron	6982144	6982232	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6982233	6982319	1	-	0	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6982233	6982319	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	intron	6982320	6982406	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6982407	6982535	1	-	0	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6982407	6982535	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	intron	6982536	6982663	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6982664	6982820	0.98	-	1	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6982664	6982820	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	intron	6982821	6983055	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6983056	6983158	1	-	2	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6983056	6983158	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	intron	6983159	6983242	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6983243	6983334	1	-	1	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6983243	6983334	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	intron	6983335	6983430	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6983431	6983566	1	-	2	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6983431	6983566	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	intron	6983567	6983643	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6983644	6983735	1	-	1	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6983644	6983735	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	intron	6983736	6983888	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6983889	6983969	1	-	1	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6983889	6983969	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	intron	6983970	6984056	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	CDS	6984057	6984112	0.6	-	0	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	exon	6984057	6984112	.	-	.	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
Ledus.S1	AUGUSTUS	start_codon	6984110	6984112	.	-	0	transcript_id "Ledus.S1G064300.t1"; gene_id "Ledus.S1G064300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3937.t1 is derived from g1373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13652743	13653405	.	-	.	Ledus.S1G135800
Ledus.S1	AUGUSTUS	transcript	13652743	13653405	.	-	.	transcript_id "Ledus.S1G135800.t1"; gene_id "Ledus.S1G135800"
Ledus.S1	AUGUSTUS	stop_codon	13652740	13652742	.	-	0	transcript_id "Ledus.S1G135800.t1"; gene_id "Ledus.S1G135800"
Ledus.S1	AUGUSTUS	CDS	13652743	13653405	0.92	-	0	transcript_id "Ledus.S1G135800.t1"; gene_id "Ledus.S1G135800"
Ledus.S1	AUGUSTUS	exon	13652743	13653405	.	-	.	transcript_id "Ledus.S1G135800.t1"; gene_id "Ledus.S1G135800"
Ledus.S1	AUGUSTUS	start_codon	13653403	13653405	.	-	0	transcript_id "Ledus.S1G135800.t1"; gene_id "Ledus.S1G135800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1423.t1 is derived from g8284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9983817	9984664	.	+	.	Ledus.S2G130500
Ledus.S2	AUGUSTUS	transcript	9983817	9984664	.	+	.	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	start_codon	9983817	9983819	.	+	0	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	CDS	9983817	9983839	0.53	+	0	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	exon	9983817	9983839	.	+	.	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	intron	9983840	9984117	.	+	.	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	CDS	9984118	9984260	0.39	+	1	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	exon	9984118	9984260	.	+	.	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	intron	9984261	9984395	.	+	.	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	CDS	9984396	9984437	0.96	+	2	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	exon	9984396	9984437	.	+	.	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	intron	9984438	9984599	.	+	.	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	CDS	9984600	9984664	0.92	+	2	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	exon	9984600	9984664	.	+	.	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
Ledus.S2	AUGUSTUS	stop_codon	9984665	9984667	.	+	0	transcript_id "Ledus.S2G130500.t1"; gene_id "Ledus.S2G130500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8770.t1 is derived from g9800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1902276	1902988	.	+	.	Ledus.S3G024700
Ledus.S3	AUGUSTUS	transcript	1902276	1902988	.	+	.	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	start_codon	1902276	1902278	.	+	0	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	CDS	1902276	1902278	0.95	+	0	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	exon	1902276	1902278	.	+	.	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	intron	1902279	1902406	.	+	.	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	CDS	1902407	1902475	0.65	+	0	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	exon	1902407	1902475	.	+	.	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	intron	1902476	1902580	.	+	.	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	CDS	1902581	1902604	0.65	+	0	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	exon	1902581	1902604	.	+	.	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	intron	1902605	1902687	.	+	.	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	CDS	1902688	1902730	1	+	0	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	exon	1902688	1902730	.	+	.	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	intron	1902731	1902860	.	+	.	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	CDS	1902861	1902988	1	+	2	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	exon	1902861	1902988	.	+	.	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
Ledus.S3	AUGUSTUS	stop_codon	1902989	1902991	.	+	0	transcript_id "Ledus.S3G024700.t1"; gene_id "Ledus.S3G024700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1366.t1 is derived from g8227.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9481432	9484050	.	+	.	Ledus.S2G124800
Ledus.S2	AUGUSTUS	transcript	9481432	9484050	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	start_codon	9481432	9481434	.	+	0	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9481432	9481447	1	+	0	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9481432	9481447	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	intron	9481448	9481589	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9481590	9481649	1	+	2	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9481590	9481649	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	intron	9481650	9481805	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9481806	9481993	1	+	2	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9481806	9481993	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	intron	9481994	9482078	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9482079	9482149	1	+	0	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9482079	9482149	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	intron	9482150	9482251	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9482252	9482360	0.77	+	1	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9482252	9482360	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	intron	9482361	9482515	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9482516	9482614	0.77	+	0	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9482516	9482614	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	intron	9482615	9482732	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9482733	9482798	0.77	+	0	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9482733	9482798	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	intron	9482799	9482962	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9482963	9483079	1	+	0	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9482963	9483079	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	intron	9483080	9483247	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9483248	9483322	1	+	0	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9483248	9483322	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	intron	9483323	9483413	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9483414	9483516	1	+	0	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9483414	9483516	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	intron	9483517	9483617	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9483618	9483665	1	+	2	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9483618	9483665	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	intron	9483666	9483758	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9483759	9483880	1	+	2	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9483759	9483880	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	intron	9483881	9483957	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	CDS	9483958	9484050	1	+	0	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	exon	9483958	9484050	.	+	.	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
Ledus.S2	AUGUSTUS	stop_codon	9484051	9484053	.	+	0	transcript_id "Ledus.S2G124800.t1"; gene_id "Ledus.S2G124800"
# This transcript jg4934.t2 is derived from g2372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4935.t1 is derived from g2373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20756005	20756752	.	+	.	Ledus.S1G235600
Ledus.S1	AUGUSTUS	transcript	20756005	20756752	.	+	.	transcript_id "Ledus.S1G235600.t1"; gene_id "Ledus.S1G235600"
Ledus.S1	AUGUSTUS	start_codon	20756005	20756007	.	+	0	transcript_id "Ledus.S1G235600.t1"; gene_id "Ledus.S1G235600"
Ledus.S1	AUGUSTUS	CDS	20756005	20756239	0.81	+	0	transcript_id "Ledus.S1G235600.t1"; gene_id "Ledus.S1G235600"
Ledus.S1	AUGUSTUS	exon	20756005	20756239	.	+	.	transcript_id "Ledus.S1G235600.t1"; gene_id "Ledus.S1G235600"
Ledus.S1	AUGUSTUS	intron	20756240	20756323	.	+	.	transcript_id "Ledus.S1G235600.t1"; gene_id "Ledus.S1G235600"
Ledus.S1	AUGUSTUS	CDS	20756324	20756406	1	+	2	transcript_id "Ledus.S1G235600.t1"; gene_id "Ledus.S1G235600"
Ledus.S1	AUGUSTUS	exon	20756324	20756406	.	+	.	transcript_id "Ledus.S1G235600.t1"; gene_id "Ledus.S1G235600"
Ledus.S1	AUGUSTUS	intron	20756407	20756503	.	+	.	transcript_id "Ledus.S1G235600.t1"; gene_id "Ledus.S1G235600"
Ledus.S1	AUGUSTUS	CDS	20756504	20756752	0.91	+	0	transcript_id "Ledus.S1G235600.t1"; gene_id "Ledus.S1G235600"
Ledus.S1	AUGUSTUS	exon	20756504	20756752	.	+	.	transcript_id "Ledus.S1G235600.t1"; gene_id "Ledus.S1G235600"
Ledus.S1	AUGUSTUS	stop_codon	20756753	20756755	.	+	0	transcript_id "Ledus.S1G235600.t1"; gene_id "Ledus.S1G235600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3320.t1 is derived from g755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7449963	7451329	.	-	.	Ledus.S1G074100
Ledus.S1	AUGUSTUS	transcript	7449963	7451329	.	-	.	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	stop_codon	7449960	7449962	.	-	0	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	CDS	7449963	7450079	0.41	-	0	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	exon	7449963	7450079	.	-	.	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	intron	7450080	7450372	.	-	.	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	CDS	7450373	7450573	0.62	-	0	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	exon	7450373	7450573	.	-	.	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	intron	7450574	7450656	.	-	.	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	CDS	7450657	7450746	1	-	0	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	exon	7450657	7450746	.	-	.	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	intron	7450747	7450866	.	-	.	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	CDS	7450867	7451004	1	-	0	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	exon	7450867	7451004	.	-	.	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	intron	7451005	7451125	.	-	.	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	CDS	7451126	7451329	0.99	-	0	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	exon	7451126	7451329	.	-	.	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
Ledus.S1	AUGUSTUS	start_codon	7451327	7451329	.	-	0	transcript_id "Ledus.S1G074100.t1"; gene_id "Ledus.S1G074100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4389.t1 is derived from g1825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16760684	16762086	.	+	.	Ledus.S1G181000
Ledus.S1	AUGUSTUS	transcript	16760684	16762086	.	+	.	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	start_codon	16760684	16760686	.	+	0	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	CDS	16760684	16760923	1	+	0	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	exon	16760684	16760923	.	+	.	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	intron	16760924	16761153	.	+	.	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	CDS	16761154	16761259	1	+	0	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	exon	16761154	16761259	.	+	.	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	intron	16761260	16761335	.	+	.	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	CDS	16761336	16761469	1	+	2	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	exon	16761336	16761469	.	+	.	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	intron	16761470	16761548	.	+	.	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	CDS	16761549	16761620	1	+	0	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	exon	16761549	16761620	.	+	.	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	intron	16761621	16761711	.	+	.	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	CDS	16761712	16761864	1	+	0	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	exon	16761712	16761864	.	+	.	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	intron	16761865	16761957	.	+	.	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	CDS	16761958	16762086	0.95	+	0	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	exon	16761958	16762086	.	+	.	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
Ledus.S1	AUGUSTUS	stop_codon	16762087	16762089	.	+	0	transcript_id "Ledus.S1G181000.t1"; gene_id "Ledus.S1G181000"
# This transcript jg6178.t2 is derived from g3621.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6179.t1 is derived from g3622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29433672	29434400	.	-	.	Ledus.S1G360000
Ledus.S1	AUGUSTUS	transcript	29433672	29434400	.	-	.	transcript_id "Ledus.S1G360000.t1"; gene_id "Ledus.S1G360000"
Ledus.S1	AUGUSTUS	stop_codon	29433669	29433671	.	-	0	transcript_id "Ledus.S1G360000.t1"; gene_id "Ledus.S1G360000"
Ledus.S1	AUGUSTUS	CDS	29433672	29434400	0.99	-	0	transcript_id "Ledus.S1G360000.t1"; gene_id "Ledus.S1G360000"
Ledus.S1	AUGUSTUS	exon	29433672	29434400	.	-	.	transcript_id "Ledus.S1G360000.t1"; gene_id "Ledus.S1G360000"
Ledus.S1	AUGUSTUS	start_codon	29434398	29434400	.	-	0	transcript_id "Ledus.S1G360000.t1"; gene_id "Ledus.S1G360000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9424.t1 is derived from g10454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6671412	6672109	.	-	.	Ledus.S3G090100
Ledus.S3	AUGUSTUS	transcript	6671412	6672109	.	-	.	transcript_id "Ledus.S3G090100.t1"; gene_id "Ledus.S3G090100"
Ledus.S3	AUGUSTUS	stop_codon	6671409	6671411	.	-	0	transcript_id "Ledus.S3G090100.t1"; gene_id "Ledus.S3G090100"
Ledus.S3	AUGUSTUS	CDS	6671412	6671989	1	-	2	transcript_id "Ledus.S3G090100.t1"; gene_id "Ledus.S3G090100"
Ledus.S3	AUGUSTUS	exon	6671412	6671989	.	-	.	transcript_id "Ledus.S3G090100.t1"; gene_id "Ledus.S3G090100"
Ledus.S3	AUGUSTUS	intron	6671990	6672081	.	-	.	transcript_id "Ledus.S3G090100.t1"; gene_id "Ledus.S3G090100"
Ledus.S3	AUGUSTUS	CDS	6672082	6672109	0.99	-	0	transcript_id "Ledus.S3G090100.t1"; gene_id "Ledus.S3G090100"
Ledus.S3	AUGUSTUS	exon	6672082	6672109	.	-	.	transcript_id "Ledus.S3G090100.t1"; gene_id "Ledus.S3G090100"
Ledus.S3	AUGUSTUS	start_codon	6672107	6672109	.	-	0	transcript_id "Ledus.S3G090100.t1"; gene_id "Ledus.S3G090100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8743.t1 is derived from g9773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1748348	1749968	.	-	.	Ledus.S3G022000
Ledus.S3	AUGUSTUS	transcript	1748348	1749968	.	-	.	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	stop_codon	1748345	1748347	.	-	0	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	CDS	1748348	1748619	0.98	-	2	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	exon	1748348	1748619	.	-	.	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	intron	1748620	1748753	.	-	.	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	CDS	1748754	1749006	0.76	-	0	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	exon	1748754	1749006	.	-	.	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	intron	1749007	1749096	.	-	.	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	CDS	1749097	1749263	1	-	2	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	exon	1749097	1749263	.	-	.	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	intron	1749264	1749342	.	-	.	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	CDS	1749343	1749549	1	-	2	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	exon	1749343	1749549	.	-	.	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	intron	1749550	1749625	.	-	.	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	CDS	1749626	1749968	0.93	-	0	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	exon	1749626	1749968	.	-	.	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
Ledus.S3	AUGUSTUS	start_codon	1749966	1749968	.	-	0	transcript_id "Ledus.S3G022000.t1"; gene_id "Ledus.S3G022000"
# This transcript jg5133.t2 is derived from g2572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5134.t1 is derived from g2573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21887464	21891327	.	-	.	Ledus.S1G255500
Ledus.S1	AUGUSTUS	transcript	21887464	21891327	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	stop_codon	21887461	21887463	.	-	0	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21887464	21887571	0.88	-	0	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21887464	21887571	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	intron	21887572	21887654	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21887655	21887735	1	-	0	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21887655	21887735	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	intron	21887736	21887826	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21887827	21887919	1	-	0	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21887827	21887919	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	intron	21887920	21887998	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21887999	21888153	0.97	-	2	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21887999	21888153	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	intron	21888154	21888256	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21888257	21888365	0.98	-	0	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21888257	21888365	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	intron	21888366	21888446	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21888447	21888637	1	-	2	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21888447	21888637	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	intron	21888638	21888724	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21888725	21888879	1	-	1	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21888725	21888879	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	intron	21888880	21889057	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21889058	21889330	1	-	1	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21889058	21889330	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	intron	21889331	21889500	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21889501	21889673	1	-	0	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21889501	21889673	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	intron	21889674	21889808	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21889809	21890084	1	-	0	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21889809	21890084	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	intron	21890085	21890196	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21890197	21890316	1	-	0	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21890197	21890316	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	intron	21890317	21890414	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21890415	21890540	1	-	0	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21890415	21890540	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	intron	21890541	21890640	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	CDS	21890641	21891327	0.95	-	0	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	exon	21890641	21891327	.	-	.	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
Ledus.S1	AUGUSTUS	start_codon	21891325	21891327	.	-	0	transcript_id "Ledus.S1G255500.t1"; gene_id "Ledus.S1G255500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11746.t1 is derived from g5365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6549274	6550372	.	+	.	Ledus.S4G090200
Ledus.S4	AUGUSTUS	transcript	6549274	6550372	.	+	.	transcript_id "Ledus.S4G090200.t1"; gene_id "Ledus.S4G090200"
Ledus.S4	AUGUSTUS	start_codon	6549274	6549276	.	+	0	transcript_id "Ledus.S4G090200.t1"; gene_id "Ledus.S4G090200"
Ledus.S4	AUGUSTUS	CDS	6549274	6549528	1	+	0	transcript_id "Ledus.S4G090200.t1"; gene_id "Ledus.S4G090200"
Ledus.S4	AUGUSTUS	exon	6549274	6549528	.	+	.	transcript_id "Ledus.S4G090200.t1"; gene_id "Ledus.S4G090200"
Ledus.S4	AUGUSTUS	intron	6549529	6549625	.	+	.	transcript_id "Ledus.S4G090200.t1"; gene_id "Ledus.S4G090200"
Ledus.S4	AUGUSTUS	CDS	6549626	6550372	1	+	0	transcript_id "Ledus.S4G090200.t1"; gene_id "Ledus.S4G090200"
Ledus.S4	AUGUSTUS	exon	6549626	6550372	.	+	.	transcript_id "Ledus.S4G090200.t1"; gene_id "Ledus.S4G090200"
Ledus.S4	AUGUSTUS	stop_codon	6550373	6550375	.	+	0	transcript_id "Ledus.S4G090200.t1"; gene_id "Ledus.S4G090200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11239.t1 is derived from g4857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2869012	2869703	.	+	.	Ledus.S4G039500
Ledus.S4	AUGUSTUS	transcript	2869012	2869703	.	+	.	transcript_id "Ledus.S4G039500.t1"; gene_id "Ledus.S4G039500"
Ledus.S4	AUGUSTUS	start_codon	2869012	2869014	.	+	0	transcript_id "Ledus.S4G039500.t1"; gene_id "Ledus.S4G039500"
Ledus.S4	AUGUSTUS	CDS	2869012	2869316	0.41	+	0	transcript_id "Ledus.S4G039500.t1"; gene_id "Ledus.S4G039500"
Ledus.S4	AUGUSTUS	exon	2869012	2869316	.	+	.	transcript_id "Ledus.S4G039500.t1"; gene_id "Ledus.S4G039500"
Ledus.S4	AUGUSTUS	intron	2869317	2869508	.	+	.	transcript_id "Ledus.S4G039500.t1"; gene_id "Ledus.S4G039500"
Ledus.S4	AUGUSTUS	CDS	2869509	2869551	0.58	+	1	transcript_id "Ledus.S4G039500.t1"; gene_id "Ledus.S4G039500"
Ledus.S4	AUGUSTUS	exon	2869509	2869551	.	+	.	transcript_id "Ledus.S4G039500.t1"; gene_id "Ledus.S4G039500"
Ledus.S4	AUGUSTUS	intron	2869552	2869679	.	+	.	transcript_id "Ledus.S4G039500.t1"; gene_id "Ledus.S4G039500"
Ledus.S4	AUGUSTUS	CDS	2869680	2869703	0.35	+	0	transcript_id "Ledus.S4G039500.t1"; gene_id "Ledus.S4G039500"
Ledus.S4	AUGUSTUS	exon	2869680	2869703	.	+	.	transcript_id "Ledus.S4G039500.t1"; gene_id "Ledus.S4G039500"
Ledus.S4	AUGUSTUS	stop_codon	2869704	2869706	.	+	0	transcript_id "Ledus.S4G039500.t1"; gene_id "Ledus.S4G039500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3238.t1 is derived from g673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7061227	7062462	.	-	.	Ledus.S1G065900
Ledus.S1	AUGUSTUS	transcript	7061227	7062462	.	-	.	transcript_id "Ledus.S1G065900.t1"; gene_id "Ledus.S1G065900"
Ledus.S1	AUGUSTUS	stop_codon	7061224	7061226	.	-	0	transcript_id "Ledus.S1G065900.t1"; gene_id "Ledus.S1G065900"
Ledus.S1	AUGUSTUS	CDS	7061227	7062462	0.95	-	0	transcript_id "Ledus.S1G065900.t1"; gene_id "Ledus.S1G065900"
Ledus.S1	AUGUSTUS	exon	7061227	7062462	.	-	.	transcript_id "Ledus.S1G065900.t1"; gene_id "Ledus.S1G065900"
Ledus.S1	AUGUSTUS	start_codon	7062460	7062462	.	-	0	transcript_id "Ledus.S1G065900.t1"; gene_id "Ledus.S1G065900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12749.t1 is derived from g6371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14209481	14212225	.	-	.	Ledus.S4G190500
Ledus.S4	AUGUSTUS	transcript	14209481	14212225	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	stop_codon	14209478	14209480	.	-	0	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	CDS	14209481	14209732	0.48	-	0	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	exon	14209481	14209732	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	intron	14209733	14209812	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	CDS	14209813	14210059	1	-	1	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	exon	14209813	14210059	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	intron	14210060	14210140	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	CDS	14210141	14210445	0.97	-	0	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	exon	14210141	14210445	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	intron	14210446	14210552	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	CDS	14210553	14210626	1	-	2	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	exon	14210553	14210626	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	intron	14210627	14210865	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	CDS	14210866	14211170	1	-	1	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	exon	14210866	14211170	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	intron	14211171	14211288	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	CDS	14211289	14211397	1	-	2	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	exon	14211289	14211397	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	intron	14211398	14211472	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	CDS	14211473	14211616	1	-	2	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	exon	14211473	14211616	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	intron	14211617	14211696	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	CDS	14211697	14211806	0.96	-	1	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	exon	14211697	14211806	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	intron	14211807	14211922	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	CDS	14211923	14211995	0.9	-	2	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	exon	14211923	14211995	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	intron	14211996	14212110	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	CDS	14212111	14212225	0.86	-	0	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	exon	14212111	14212225	.	-	.	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
Ledus.S4	AUGUSTUS	start_codon	14212223	14212225	.	-	0	transcript_id "Ledus.S4G190500.t1"; gene_id "Ledus.S4G190500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9732.t1 is derived from g10762.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9476161	9478530	.	-	.	Ledus.S3G120900
Ledus.S3	AUGUSTUS	transcript	9476161	9478530	.	-	.	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	stop_codon	9476158	9476160	.	-	0	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	CDS	9476161	9476210	1	-	2	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	exon	9476161	9476210	.	-	.	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	intron	9476211	9476429	.	-	.	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	CDS	9476430	9477074	0.99	-	2	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	exon	9476430	9477074	.	-	.	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	intron	9477075	9477155	.	-	.	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	CDS	9477156	9477226	1	-	1	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	exon	9477156	9477226	.	-	.	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	intron	9477227	9477440	.	-	.	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	CDS	9477441	9477615	1	-	2	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	exon	9477441	9477615	.	-	.	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	intron	9477616	9477898	.	-	.	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	CDS	9477899	9478019	1	-	0	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	exon	9477899	9478019	.	-	.	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	intron	9478020	9478104	.	-	.	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	CDS	9478105	9478530	0.84	-	0	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	exon	9478105	9478530	.	-	.	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
Ledus.S3	AUGUSTUS	start_codon	9478528	9478530	.	-	0	transcript_id "Ledus.S3G120900.t1"; gene_id "Ledus.S3G120900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2406.t1 is derived from g9269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17951816	17952271	.	+	.	Ledus.S2G228800
Ledus.S2	AUGUSTUS	transcript	17951816	17952271	.	+	.	transcript_id "Ledus.S2G228800.t1"; gene_id "Ledus.S2G228800"
Ledus.S2	AUGUSTUS	start_codon	17951816	17951818	.	+	0	transcript_id "Ledus.S2G228800.t1"; gene_id "Ledus.S2G228800"
Ledus.S2	AUGUSTUS	CDS	17951816	17952271	0.53	+	0	transcript_id "Ledus.S2G228800.t1"; gene_id "Ledus.S2G228800"
Ledus.S2	AUGUSTUS	exon	17951816	17952271	.	+	.	transcript_id "Ledus.S2G228800.t1"; gene_id "Ledus.S2G228800"
Ledus.S2	AUGUSTUS	stop_codon	17952272	17952274	.	+	0	transcript_id "Ledus.S2G228800.t1"; gene_id "Ledus.S2G228800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3183.t1 is derived from g618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6625884	6628516	.	-	.	Ledus.S1G060400
Ledus.S1	AUGUSTUS	transcript	6625884	6628516	.	-	.	transcript_id "Ledus.S1G060400.t1"; gene_id "Ledus.S1G060400"
Ledus.S1	AUGUSTUS	stop_codon	6625881	6625883	.	-	0	transcript_id "Ledus.S1G060400.t1"; gene_id "Ledus.S1G060400"
Ledus.S1	AUGUSTUS	CDS	6625884	6626365	0.72	-	2	transcript_id "Ledus.S1G060400.t1"; gene_id "Ledus.S1G060400"
Ledus.S1	AUGUSTUS	exon	6625884	6626365	.	-	.	transcript_id "Ledus.S1G060400.t1"; gene_id "Ledus.S1G060400"
Ledus.S1	AUGUSTUS	intron	6626366	6626604	.	-	.	transcript_id "Ledus.S1G060400.t1"; gene_id "Ledus.S1G060400"
Ledus.S1	AUGUSTUS	CDS	6626605	6626678	0.58	-	1	transcript_id "Ledus.S1G060400.t1"; gene_id "Ledus.S1G060400"
Ledus.S1	AUGUSTUS	exon	6626605	6626678	.	-	.	transcript_id "Ledus.S1G060400.t1"; gene_id "Ledus.S1G060400"
Ledus.S1	AUGUSTUS	intron	6626679	6626945	.	-	.	transcript_id "Ledus.S1G060400.t1"; gene_id "Ledus.S1G060400"
Ledus.S1	AUGUSTUS	CDS	6626946	6628516	0.5	-	0	transcript_id "Ledus.S1G060400.t1"; gene_id "Ledus.S1G060400"
Ledus.S1	AUGUSTUS	exon	6626946	6628516	.	-	.	transcript_id "Ledus.S1G060400.t1"; gene_id "Ledus.S1G060400"
Ledus.S1	AUGUSTUS	start_codon	6628514	6628516	.	-	0	transcript_id "Ledus.S1G060400.t1"; gene_id "Ledus.S1G060400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2109.t1 is derived from g8972.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14777570	14779059	.	-	.	Ledus.S2G199100
Ledus.S2	AUGUSTUS	transcript	14777570	14779059	.	-	.	transcript_id "Ledus.S2G199100.t1"; gene_id "Ledus.S2G199100"
Ledus.S2	AUGUSTUS	stop_codon	14777567	14777569	.	-	0	transcript_id "Ledus.S2G199100.t1"; gene_id "Ledus.S2G199100"
Ledus.S2	AUGUSTUS	CDS	14777570	14778218	0.99	-	1	transcript_id "Ledus.S2G199100.t1"; gene_id "Ledus.S2G199100"
Ledus.S2	AUGUSTUS	exon	14777570	14778218	.	-	.	transcript_id "Ledus.S2G199100.t1"; gene_id "Ledus.S2G199100"
Ledus.S2	AUGUSTUS	intron	14778219	14778307	.	-	.	transcript_id "Ledus.S2G199100.t1"; gene_id "Ledus.S2G199100"
Ledus.S2	AUGUSTUS	CDS	14778308	14779059	0.96	-	0	transcript_id "Ledus.S2G199100.t1"; gene_id "Ledus.S2G199100"
Ledus.S2	AUGUSTUS	exon	14778308	14779059	.	-	.	transcript_id "Ledus.S2G199100.t1"; gene_id "Ledus.S2G199100"
Ledus.S2	AUGUSTUS	start_codon	14779057	14779059	.	-	0	transcript_id "Ledus.S2G199100.t1"; gene_id "Ledus.S2G199100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2463.t1 is derived from g9326.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18274835	18276412	.	+	.	Ledus.S2G234500
Ledus.S2	AUGUSTUS	transcript	18274835	18276412	.	+	.	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	start_codon	18274835	18274837	.	+	0	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	CDS	18274835	18274864	0.96	+	0	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	exon	18274835	18274864	.	+	.	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	intron	18274865	18274998	.	+	.	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	CDS	18274999	18275224	0.99	+	0	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	exon	18274999	18275224	.	+	.	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	intron	18275225	18275517	.	+	.	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	CDS	18275518	18275631	1	+	2	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	exon	18275518	18275631	.	+	.	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	intron	18275632	18275697	.	+	.	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	CDS	18275698	18275853	1	+	2	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	exon	18275698	18275853	.	+	.	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	intron	18275854	18275943	.	+	.	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	CDS	18275944	18276164	1	+	2	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	exon	18275944	18276164	.	+	.	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	intron	18276165	18276247	.	+	.	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	CDS	18276248	18276412	1	+	0	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	exon	18276248	18276412	.	+	.	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	stop_codon	18276413	18276415	.	+	0	transcript_id "Ledus.S2G234500.t1"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	transcript	18274858	18276412	.	+	.	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	start_codon	18274858	18274860	.	+	0	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	CDS	18274858	18274864	0.77	+	0	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	exon	18274858	18274864	.	+	.	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	intron	18274865	18275146	.	+	.	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	CDS	18275147	18275224	0.77	+	2	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	exon	18275147	18275224	.	+	.	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	intron	18275225	18275517	.	+	.	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	CDS	18275518	18275631	1	+	2	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	exon	18275518	18275631	.	+	.	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	intron	18275632	18275697	.	+	.	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	CDS	18275698	18275853	1	+	2	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	exon	18275698	18275853	.	+	.	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	intron	18275854	18275943	.	+	.	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	CDS	18275944	18276164	1	+	2	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	exon	18275944	18276164	.	+	.	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	intron	18276165	18276247	.	+	.	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	CDS	18276248	18276412	1	+	0	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	exon	18276248	18276412	.	+	.	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
Ledus.S2	AUGUSTUS	stop_codon	18276413	18276415	.	+	0	transcript_id "Ledus.S2G234500.t2"; gene_id "Ledus.S2G234500"
# This transcript jg6749.t2 is derived from g4192.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6750.t1 is derived from g4193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33735229	33738052	.	-	.	Ledus.S1G417100
Ledus.S1	AUGUSTUS	transcript	33735229	33738052	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	stop_codon	33735226	33735228	.	-	0	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	CDS	33735229	33735352	0.9	-	1	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	exon	33735229	33735352	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	intron	33735353	33735464	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	CDS	33735465	33735579	0.93	-	2	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	exon	33735465	33735579	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	intron	33735580	33735714	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	CDS	33735715	33735830	1	-	1	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	exon	33735715	33735830	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	intron	33735831	33735921	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	CDS	33735922	33736001	0.99	-	0	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	exon	33735922	33736001	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	intron	33736002	33736103	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	CDS	33736104	33736157	0.99	-	0	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	exon	33736104	33736157	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	intron	33736158	33736259	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	CDS	33736260	33736370	1	-	0	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	exon	33736260	33736370	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	intron	33736371	33736443	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	CDS	33736444	33736734	0.98	-	0	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	exon	33736444	33736734	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	intron	33736735	33736815	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	CDS	33736816	33736929	1	-	0	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	exon	33736816	33736929	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	intron	33736930	33737012	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	CDS	33737013	33737123	1	-	0	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	exon	33737013	33737123	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	intron	33737124	33737250	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	CDS	33737251	33737741	0.96	-	2	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	exon	33737251	33737741	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	intron	33737742	33737828	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	CDS	33737829	33737874	0.79	-	0	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	exon	33737829	33737874	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	intron	33737875	33738034	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	CDS	33738035	33738052	0.5	-	0	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	exon	33738035	33738052	.	-	.	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
Ledus.S1	AUGUSTUS	start_codon	33738050	33738052	.	-	0	transcript_id "Ledus.S1G417100.t1"; gene_id "Ledus.S1G417100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9344.t1 is derived from g10374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6286967	6290628	.	+	.	Ledus.S3G082100
Ledus.S3	AUGUSTUS	transcript	6286967	6290628	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	start_codon	6286967	6286969	.	+	0	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	CDS	6286967	6287026	0.65	+	0	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	exon	6286967	6287026	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	intron	6287027	6287117	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	CDS	6287118	6287213	0.4	+	0	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	exon	6287118	6287213	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	intron	6287214	6287613	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	CDS	6287614	6287685	1	+	0	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	exon	6287614	6287685	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	intron	6287686	6288000	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	CDS	6288001	6288490	0.95	+	0	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	exon	6288001	6288490	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	intron	6288491	6288634	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	CDS	6288635	6289236	0.9	+	2	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	exon	6288635	6289236	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	intron	6289237	6289327	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	CDS	6289328	6289394	0.94	+	0	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	exon	6289328	6289394	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	intron	6289395	6289484	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	CDS	6289485	6289577	1	+	2	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	exon	6289485	6289577	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	intron	6289578	6289651	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	CDS	6289652	6289765	0.94	+	2	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	exon	6289652	6289765	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	intron	6289766	6289896	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	CDS	6289897	6289996	0.83	+	2	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	exon	6289897	6289996	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	intron	6289997	6290078	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	CDS	6290079	6290193	1	+	1	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	exon	6290079	6290193	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	intron	6290194	6290272	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	CDS	6290273	6290389	1	+	0	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	exon	6290273	6290389	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	intron	6290390	6290472	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	CDS	6290473	6290628	1	+	0	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	exon	6290473	6290628	.	+	.	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
Ledus.S3	AUGUSTUS	stop_codon	6290629	6290631	.	+	0	transcript_id "Ledus.S3G082100.t1"; gene_id "Ledus.S3G082100"
# This transcript jg5132.t2 is derived from g2571.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5133.t1 is derived from g2572.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21886613	21887277	.	+	.	Ledus.S1G255400
Ledus.S1	AUGUSTUS	transcript	21886613	21887277	.	+	.	transcript_id "Ledus.S1G255400.t1"; gene_id "Ledus.S1G255400"
Ledus.S1	AUGUSTUS	start_codon	21886613	21886615	.	+	0	transcript_id "Ledus.S1G255400.t1"; gene_id "Ledus.S1G255400"
Ledus.S1	AUGUSTUS	CDS	21886613	21887077	0.59	+	0	transcript_id "Ledus.S1G255400.t1"; gene_id "Ledus.S1G255400"
Ledus.S1	AUGUSTUS	exon	21886613	21887077	.	+	.	transcript_id "Ledus.S1G255400.t1"; gene_id "Ledus.S1G255400"
Ledus.S1	AUGUSTUS	intron	21887078	21887163	.	+	.	transcript_id "Ledus.S1G255400.t1"; gene_id "Ledus.S1G255400"
Ledus.S1	AUGUSTUS	CDS	21887164	21887277	0.95	+	0	transcript_id "Ledus.S1G255400.t1"; gene_id "Ledus.S1G255400"
Ledus.S1	AUGUSTUS	exon	21887164	21887277	.	+	.	transcript_id "Ledus.S1G255400.t1"; gene_id "Ledus.S1G255400"
Ledus.S1	AUGUSTUS	stop_codon	21887278	21887280	.	+	0	transcript_id "Ledus.S1G255400.t1"; gene_id "Ledus.S1G255400"
Ledus.S1	AUGUSTUS	transcript	21886613	21887137	.	+	.	transcript_id "Ledus.S1G255400.t2"; gene_id "Ledus.S1G255400"
Ledus.S1	AUGUSTUS	start_codon	21886613	21886615	.	+	0	transcript_id "Ledus.S1G255400.t2"; gene_id "Ledus.S1G255400"
Ledus.S1	AUGUSTUS	CDS	21886613	21887137	0.99	+	0	transcript_id "Ledus.S1G255400.t2"; gene_id "Ledus.S1G255400"
Ledus.S1	AUGUSTUS	exon	21886613	21887137	.	+	.	transcript_id "Ledus.S1G255400.t2"; gene_id "Ledus.S1G255400"
Ledus.S1	AUGUSTUS	stop_codon	21887138	21887140	.	+	0	transcript_id "Ledus.S1G255400.t2"; gene_id "Ledus.S1G255400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10069.t1 is derived from g11099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12482052	12483311	.	+	.	Ledus.S3G154600
Ledus.S3	AUGUSTUS	transcript	12482052	12483311	.	+	.	transcript_id "Ledus.S3G154600.t1"; gene_id "Ledus.S3G154600"
Ledus.S3	AUGUSTUS	start_codon	12482052	12482054	.	+	0	transcript_id "Ledus.S3G154600.t1"; gene_id "Ledus.S3G154600"
Ledus.S3	AUGUSTUS	CDS	12482052	12483311	0.86	+	0	transcript_id "Ledus.S3G154600.t1"; gene_id "Ledus.S3G154600"
Ledus.S3	AUGUSTUS	exon	12482052	12483311	.	+	.	transcript_id "Ledus.S3G154600.t1"; gene_id "Ledus.S3G154600"
Ledus.S3	AUGUSTUS	stop_codon	12483312	12483314	.	+	0	transcript_id "Ledus.S3G154600.t1"; gene_id "Ledus.S3G154600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8143.t1 is derived from g12814.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9356720	9359244	.	+	.	Ledus.S5G092100
Ledus.S5	AUGUSTUS	transcript	9356720	9359244	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	start_codon	9356720	9356722	.	+	0	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	CDS	9356720	9357208	1	+	0	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	exon	9356720	9357208	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	intron	9357209	9357373	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	CDS	9357374	9357546	1	+	0	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	exon	9357374	9357546	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	intron	9357547	9357691	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	CDS	9357692	9357853	1	+	1	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	exon	9357692	9357853	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	intron	9357854	9357985	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	CDS	9357986	9358127	1	+	1	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	exon	9357986	9358127	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	intron	9358128	9358334	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	CDS	9358335	9358559	1	+	0	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	exon	9358335	9358559	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	intron	9358560	9358669	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	CDS	9358670	9358732	1	+	0	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	exon	9358670	9358732	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	intron	9358733	9358824	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	CDS	9358825	9358899	1	+	0	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	exon	9358825	9358899	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	intron	9358900	9359004	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	CDS	9359005	9359244	0.98	+	0	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	exon	9359005	9359244	.	+	.	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
Ledus.S5	AUGUSTUS	stop_codon	9359245	9359247	.	+	0	transcript_id "Ledus.S5G092100.t1"; gene_id "Ledus.S5G092100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4369.t1 is derived from g1805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16670667	16672592	.	-	.	Ledus.S1G179000
Ledus.S1	AUGUSTUS	transcript	16670667	16672592	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	stop_codon	16670664	16670666	.	-	0	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	CDS	16670667	16671082	1	-	2	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	exon	16670667	16671082	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	intron	16671083	16671161	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	CDS	16671162	16671394	1	-	1	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	exon	16671162	16671394	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	intron	16671395	16671489	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	CDS	16671490	16671644	1	-	0	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	exon	16671490	16671644	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	intron	16671645	16671751	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	CDS	16671752	16671915	0.57	-	2	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	exon	16671752	16671915	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	intron	16671916	16672071	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	CDS	16672072	16672216	0.98	-	0	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	exon	16672072	16672216	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	intron	16672217	16672339	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	CDS	16672340	16672429	1	-	0	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	exon	16672340	16672429	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	intron	16672430	16672514	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	CDS	16672515	16672592	0.52	-	0	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	exon	16672515	16672592	.	-	.	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
Ledus.S1	AUGUSTUS	start_codon	16672590	16672592	.	-	0	transcript_id "Ledus.S1G179000.t1"; gene_id "Ledus.S1G179000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4255.t1 is derived from g1691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15781689	15784504	.	-	.	Ledus.S1G167600
Ledus.S1	AUGUSTUS	transcript	15781689	15784504	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	stop_codon	15781686	15781688	.	-	0	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	CDS	15781689	15781877	1	-	0	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	exon	15781689	15781877	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	intron	15781878	15781975	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	CDS	15781976	15782150	0.99	-	1	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	exon	15781976	15782150	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	intron	15782151	15782260	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	CDS	15782261	15782370	1	-	0	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	exon	15782261	15782370	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	intron	15782371	15782464	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	CDS	15782465	15782510	1	-	1	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	exon	15782465	15782510	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	intron	15782511	15782661	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	CDS	15782662	15782735	1	-	0	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	exon	15782662	15782735	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	intron	15782736	15782844	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	CDS	15782845	15782930	1	-	2	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	exon	15782845	15782930	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	intron	15782931	15783024	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	CDS	15783025	15783102	1	-	2	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	exon	15783025	15783102	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	intron	15783103	15783186	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	CDS	15783187	15783262	0.97	-	0	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	exon	15783187	15783262	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	intron	15783263	15783372	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	CDS	15783373	15783558	0.97	-	0	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	exon	15783373	15783558	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	intron	15783559	15783720	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	CDS	15783721	15783875	1	-	2	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	exon	15783721	15783875	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	intron	15783876	15783959	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	CDS	15783960	15784104	0.96	-	0	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	exon	15783960	15784104	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	intron	15784105	15784210	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	CDS	15784211	15784504	0.72	-	0	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	exon	15784211	15784504	.	-	.	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
Ledus.S1	AUGUSTUS	start_codon	15784502	15784504	.	-	0	transcript_id "Ledus.S1G167600.t1"; gene_id "Ledus.S1G167600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9848.t1 is derived from g10878.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10510305	10514991	.	+	.	Ledus.S3G132500
Ledus.S3	AUGUSTUS	transcript	10510305	10514553	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	start_codon	10510305	10510307	.	+	0	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10510305	10510628	0.41	+	0	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10510305	10510628	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10510629	10510792	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10510793	10510831	1	+	0	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10510793	10510831	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10510832	10510919	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10510920	10511011	1	+	0	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10510920	10511011	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10511012	10511143	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10511144	10511393	1	+	1	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10511144	10511393	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10511394	10511671	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10511672	10511791	1	+	0	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10511672	10511791	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10511792	10512125	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10512126	10512201	1	+	0	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10512126	10512201	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10512202	10512863	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10512864	10513072	1	+	2	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10512864	10513072	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10513073	10513391	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10513392	10513500	1	+	0	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10513392	10513500	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10513501	10513689	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10513690	10513782	1	+	2	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10513690	10513782	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10513783	10514022	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10514023	10514183	0.54	+	2	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10514023	10514183	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10514184	10514342	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10514343	10514394	0.72	+	0	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10514343	10514394	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10514395	10514530	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10514531	10514553	0.92	+	2	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10514531	10514553	.	+	.	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	stop_codon	10514554	10514556	.	+	0	transcript_id "Ledus.S3G132500.t1"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	transcript	10510305	10514991	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	start_codon	10510305	10510307	.	+	0	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10510305	10510628	0.46	+	0	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10510305	10510628	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10510629	10510792	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10510793	10510831	1	+	0	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10510793	10510831	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10510832	10510919	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10510920	10511011	1	+	0	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10510920	10511011	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10511012	10511143	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10511144	10511393	1	+	1	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10511144	10511393	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10511394	10511671	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10511672	10511791	1	+	0	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10511672	10511791	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10511792	10512125	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10512126	10512201	1	+	0	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10512126	10512201	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10512202	10512863	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10512864	10513072	1	+	2	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10512864	10513072	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10513073	10513391	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10513392	10513500	1	+	0	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10513392	10513500	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10513501	10513689	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10513690	10513782	1	+	2	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10513690	10513782	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10513783	10514022	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10514023	10514183	0.95	+	2	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10514023	10514183	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10514184	10514296	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10514297	10514440	0.82	+	0	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10514297	10514440	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10514441	10514530	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10514531	10514723	0.46	+	0	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10514531	10514723	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	intron	10514724	10514965	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	CDS	10514966	10514991	0.29	+	2	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	exon	10514966	10514991	.	+	.	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
Ledus.S3	AUGUSTUS	stop_codon	10514992	10514994	.	+	0	transcript_id "Ledus.S3G132500.t2"; gene_id "Ledus.S3G132500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6176.t1 is derived from g3619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29405464	29405886	.	-	.	Ledus.S1G359700
Ledus.S1	AUGUSTUS	transcript	29405464	29405886	.	-	.	transcript_id "Ledus.S1G359700.t1"; gene_id "Ledus.S1G359700"
Ledus.S1	AUGUSTUS	stop_codon	29405461	29405463	.	-	0	transcript_id "Ledus.S1G359700.t1"; gene_id "Ledus.S1G359700"
Ledus.S1	AUGUSTUS	CDS	29405464	29405886	0.74	-	0	transcript_id "Ledus.S1G359700.t1"; gene_id "Ledus.S1G359700"
Ledus.S1	AUGUSTUS	exon	29405464	29405886	.	-	.	transcript_id "Ledus.S1G359700.t1"; gene_id "Ledus.S1G359700"
Ledus.S1	AUGUSTUS	start_codon	29405884	29405886	.	-	0	transcript_id "Ledus.S1G359700.t1"; gene_id "Ledus.S1G359700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6442.t1 is derived from g3885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31269182	31272298	.	+	.	Ledus.S1G386300
Ledus.S1	AUGUSTUS	transcript	31269182	31272298	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	start_codon	31269182	31269184	.	+	0	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	CDS	31269182	31269513	0.96	+	0	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	exon	31269182	31269513	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	intron	31269514	31269615	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	CDS	31269616	31269684	1	+	1	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	exon	31269616	31269684	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	intron	31269685	31269839	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	CDS	31269840	31269947	1	+	1	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	exon	31269840	31269947	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	intron	31269948	31270128	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	CDS	31270129	31270309	1	+	1	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	exon	31270129	31270309	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	intron	31270310	31270395	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	CDS	31270396	31270475	1	+	0	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	exon	31270396	31270475	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	intron	31270476	31270602	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	CDS	31270603	31270722	0.98	+	1	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	exon	31270603	31270722	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	intron	31270723	31270832	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	CDS	31270833	31270938	1	+	1	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	exon	31270833	31270938	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	intron	31270939	31271200	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	CDS	31271201	31271290	1	+	0	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	exon	31271201	31271290	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	intron	31271291	31271376	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	CDS	31271377	31271445	1	+	0	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	exon	31271377	31271445	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	intron	31271446	31271661	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	CDS	31271662	31272009	0.67	+	0	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	exon	31271662	31272009	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	intron	31272010	31272142	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	CDS	31272143	31272298	0.96	+	0	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	exon	31272143	31272298	.	+	.	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
Ledus.S1	AUGUSTUS	stop_codon	31272299	31272301	.	+	0	transcript_id "Ledus.S1G386300.t1"; gene_id "Ledus.S1G386300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1587.t1 is derived from g8448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11148618	11153512	.	-	.	Ledus.S2G146900
Ledus.S2	AUGUSTUS	transcript	11148618	11153512	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	stop_codon	11148615	11148617	.	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11148618	11148934	0.84	-	2	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11148618	11148934	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11148935	11149036	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11149037	11149094	1	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11149037	11149094	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11149095	11149204	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11149205	11149279	0.94	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11149205	11149279	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11149280	11149363	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11149364	11149498	1	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11149364	11149498	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11149499	11149594	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11149595	11149774	0.95	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11149595	11149774	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11149775	11150058	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11150059	11150064	0.79	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11150059	11150064	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11150065	11150148	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11150149	11150159	0.8	-	2	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11150149	11150159	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11150160	11150307	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11150308	11150366	1	-	1	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11150308	11150366	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11150367	11150598	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11150599	11150714	1	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11150599	11150714	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11150715	11150812	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11150813	11150998	1	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11150813	11150998	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11150999	11151152	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11151153	11151234	1	-	1	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11151153	11151234	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11151235	11151335	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11151336	11151427	1	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11151336	11151427	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11151428	11151534	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11151535	11151678	1	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11151535	11151678	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11151679	11151761	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11151762	11151842	1	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11151762	11151842	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11151843	11151965	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11151966	11152049	0.97	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11151966	11152049	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11152050	11152152	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11152153	11152254	1	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11152153	11152254	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11152255	11152354	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11152355	11152450	0.98	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11152355	11152450	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11152451	11152566	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11152567	11152624	1	-	1	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11152567	11152624	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11152625	11152775	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11152776	11152870	1	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11152776	11152870	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	intron	11152871	11153299	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	CDS	11153300	11153512	0.41	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	exon	11153300	11153512	.	-	.	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
Ledus.S2	AUGUSTUS	start_codon	11153510	11153512	.	-	0	transcript_id "Ledus.S2G146900.t1"; gene_id "Ledus.S2G146900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg63.t1 is derived from g9476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	183601	186120	.	+	.	Ledus.C8G002300
Ledus.C8	AUGUSTUS	transcript	183601	186120	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	start_codon	183601	183603	.	+	0	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	CDS	183601	183852	0.84	+	0	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	exon	183601	183852	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	intron	183853	183942	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	CDS	183943	184297	0.87	+	0	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	exon	183943	184297	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	intron	184298	184412	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	CDS	184413	184558	0.94	+	2	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	exon	184413	184558	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	intron	184559	184641	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	CDS	184642	184734	1	+	0	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	exon	184642	184734	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	intron	184735	184835	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	CDS	184836	184969	1	+	0	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	exon	184836	184969	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	intron	184970	185064	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	CDS	185065	185140	0.99	+	1	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	exon	185065	185140	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	intron	185141	185257	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	CDS	185258	185334	0.94	+	0	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	exon	185258	185334	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	intron	185335	185452	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	CDS	185453	185486	1	+	1	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	exon	185453	185486	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	intron	185487	185582	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	CDS	185583	185732	1	+	0	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	exon	185583	185732	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	intron	185733	185817	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	CDS	185818	185952	1	+	0	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	exon	185818	185952	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	intron	185953	186051	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	CDS	186052	186120	1	+	0	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	exon	186052	186120	.	+	.	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
Ledus.C8	AUGUSTUS	stop_codon	186121	186123	.	+	0	transcript_id "Ledus.C8G002300.t1"; gene_id "Ledus.C8G002300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11634.t1 is derived from g5253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5694719	5696246	.	+	.	Ledus.S4G079000
Ledus.S4	AUGUSTUS	transcript	5694719	5696246	.	+	.	transcript_id "Ledus.S4G079000.t1"; gene_id "Ledus.S4G079000"
Ledus.S4	AUGUSTUS	start_codon	5694719	5694721	.	+	0	transcript_id "Ledus.S4G079000.t1"; gene_id "Ledus.S4G079000"
Ledus.S4	AUGUSTUS	CDS	5694719	5694922	1	+	0	transcript_id "Ledus.S4G079000.t1"; gene_id "Ledus.S4G079000"
Ledus.S4	AUGUSTUS	exon	5694719	5694922	.	+	.	transcript_id "Ledus.S4G079000.t1"; gene_id "Ledus.S4G079000"
Ledus.S4	AUGUSTUS	intron	5694923	5696072	.	+	.	transcript_id "Ledus.S4G079000.t1"; gene_id "Ledus.S4G079000"
Ledus.S4	AUGUSTUS	CDS	5696073	5696246	0.97	+	0	transcript_id "Ledus.S4G079000.t1"; gene_id "Ledus.S4G079000"
Ledus.S4	AUGUSTUS	exon	5696073	5696246	.	+	.	transcript_id "Ledus.S4G079000.t1"; gene_id "Ledus.S4G079000"
Ledus.S4	AUGUSTUS	stop_codon	5696247	5696249	.	+	0	transcript_id "Ledus.S4G079000.t1"; gene_id "Ledus.S4G079000"
# This transcript jg12551.t2 is derived from g6173.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12552.t1 is derived from g6174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12854469	12856186	.	-	.	Ledus.S4G170800
Ledus.S4	AUGUSTUS	transcript	12854469	12856186	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	stop_codon	12854466	12854468	.	-	0	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	CDS	12854469	12854531	0.99	-	0	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	exon	12854469	12854531	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	intron	12854532	12854647	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	CDS	12854648	12854710	1	-	0	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	exon	12854648	12854710	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	intron	12854711	12854812	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	CDS	12854813	12854908	0.99	-	0	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	exon	12854813	12854908	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	intron	12854909	12855039	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	CDS	12855040	12855104	1	-	2	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	exon	12855040	12855104	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	intron	12855105	12855185	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	CDS	12855186	12855191	0.95	-	2	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	exon	12855186	12855191	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	intron	12855192	12855312	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	CDS	12855313	12855416	0.86	-	1	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	exon	12855313	12855416	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	intron	12855417	12855508	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	CDS	12855509	12855744	1	-	0	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	exon	12855509	12855744	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	intron	12855745	12855838	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	CDS	12855839	12856186	0.32	-	0	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	exon	12855839	12856186	.	-	.	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
Ledus.S4	AUGUSTUS	start_codon	12856184	12856186	.	-	0	transcript_id "Ledus.S4G170800.t1"; gene_id "Ledus.S4G170800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5674.t1 is derived from g3113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25762648	25763589	.	+	.	Ledus.S1G309500
Ledus.S1	AUGUSTUS	transcript	25762648	25763589	.	+	.	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	start_codon	25762648	25762650	.	+	0	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	CDS	25762648	25762854	0.95	+	0	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	exon	25762648	25762854	.	+	.	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	intron	25762855	25762973	.	+	.	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	CDS	25762974	25763153	1	+	0	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	exon	25762974	25763153	.	+	.	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	intron	25763154	25763246	.	+	.	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	CDS	25763247	25763360	1	+	0	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	exon	25763247	25763360	.	+	.	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	intron	25763361	25763466	.	+	.	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	CDS	25763467	25763589	0.74	+	0	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	exon	25763467	25763589	.	+	.	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
Ledus.S1	AUGUSTUS	stop_codon	25763590	25763592	.	+	0	transcript_id "Ledus.S1G309500.t1"; gene_id "Ledus.S1G309500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12093.t1 is derived from g5712.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9480363	9481259	.	+	.	Ledus.S4G124900
Ledus.S4	AUGUSTUS	transcript	9480363	9481259	.	+	.	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	start_codon	9480363	9480365	.	+	0	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	CDS	9480363	9480365	0.53	+	0	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	exon	9480363	9480365	.	+	.	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	intron	9480366	9480440	.	+	.	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	CDS	9480441	9480535	0.54	+	0	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	exon	9480441	9480535	.	+	.	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	intron	9480536	9480618	.	+	.	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	CDS	9480619	9480633	0.87	+	1	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	exon	9480619	9480633	.	+	.	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	intron	9480634	9481011	.	+	.	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	CDS	9481012	9481045	0.6	+	1	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	exon	9481012	9481045	.	+	.	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	intron	9481046	9481184	.	+	.	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	CDS	9481185	9481259	0.91	+	0	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	exon	9481185	9481259	.	+	.	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
Ledus.S4	AUGUSTUS	stop_codon	9481260	9481262	.	+	0	transcript_id "Ledus.S4G124900.t1"; gene_id "Ledus.S4G124900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6316.t1 is derived from g3759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30456646	30459428	.	+	.	Ledus.S1G373700
Ledus.S1	AUGUSTUS	transcript	30456646	30459428	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	start_codon	30456646	30456648	.	+	0	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	CDS	30456646	30456831	1	+	0	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	exon	30456646	30456831	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	intron	30456832	30457239	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	CDS	30457240	30457325	1	+	0	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	exon	30457240	30457325	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	intron	30457326	30457548	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	CDS	30457549	30457723	1	+	1	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	exon	30457549	30457723	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	intron	30457724	30457906	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	CDS	30457907	30458083	1	+	0	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	exon	30457907	30458083	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	intron	30458084	30458232	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	CDS	30458233	30458364	1	+	0	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	exon	30458233	30458364	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	intron	30458365	30458558	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	CDS	30458559	30458657	1	+	0	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	exon	30458559	30458657	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	intron	30458658	30458752	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	CDS	30458753	30458869	1	+	0	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	exon	30458753	30458869	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	intron	30458870	30458942	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	CDS	30458943	30459038	1	+	0	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	exon	30458943	30459038	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	intron	30459039	30459113	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	CDS	30459114	30459226	1	+	0	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	exon	30459114	30459226	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	intron	30459227	30459313	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	CDS	30459314	30459428	1	+	1	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	exon	30459314	30459428	.	+	.	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
Ledus.S1	AUGUSTUS	stop_codon	30459429	30459431	.	+	0	transcript_id "Ledus.S1G373700.t1"; gene_id "Ledus.S1G373700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3663.t1 is derived from g1099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10555673	10557316	.	+	.	Ledus.S1G108400
Ledus.S1	AUGUSTUS	transcript	10555673	10557316	.	+	.	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	start_codon	10555673	10555675	.	+	0	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	CDS	10555673	10555806	0.99	+	0	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	exon	10555673	10555806	.	+	.	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	intron	10555807	10555914	.	+	.	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	CDS	10555915	10556123	0.99	+	1	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	exon	10555915	10556123	.	+	.	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	intron	10556124	10556214	.	+	.	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	CDS	10556215	10556666	0.89	+	2	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	exon	10556215	10556666	.	+	.	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	intron	10556667	10556749	.	+	.	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	CDS	10556750	10556838	1	+	0	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	exon	10556750	10556838	.	+	.	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	intron	10556839	10556904	.	+	.	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	CDS	10556905	10557132	0.99	+	1	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	exon	10556905	10557132	.	+	.	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	intron	10557133	10557216	.	+	.	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	CDS	10557217	10557316	0.99	+	1	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	exon	10557217	10557316	.	+	.	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
Ledus.S1	AUGUSTUS	stop_codon	10557317	10557319	.	+	0	transcript_id "Ledus.S1G108400.t1"; gene_id "Ledus.S1G108400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5483.t1 is derived from g2922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24488367	24489237	.	+	.	Ledus.S1G290400
Ledus.S1	AUGUSTUS	transcript	24488367	24489237	.	+	.	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	start_codon	24488367	24488369	.	+	0	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	CDS	24488367	24488403	0.54	+	0	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	exon	24488367	24488403	.	+	.	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	intron	24488404	24488496	.	+	.	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	CDS	24488497	24488687	0.63	+	2	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	exon	24488497	24488687	.	+	.	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	intron	24488688	24488768	.	+	.	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	CDS	24488769	24489026	1	+	0	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	exon	24488769	24489026	.	+	.	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	intron	24489027	24489110	.	+	.	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	CDS	24489111	24489129	0.9	+	0	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	exon	24489111	24489129	.	+	.	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	intron	24489130	24489208	.	+	.	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	CDS	24489209	24489237	0.9	+	2	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	exon	24489209	24489237	.	+	.	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
Ledus.S1	AUGUSTUS	stop_codon	24489238	24489240	.	+	0	transcript_id "Ledus.S1G290400.t1"; gene_id "Ledus.S1G290400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4109.t1 is derived from g1545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14734412	14734921	.	+	.	Ledus.S1G153000
Ledus.S1	AUGUSTUS	transcript	14734412	14734921	.	+	.	transcript_id "Ledus.S1G153000.t1"; gene_id "Ledus.S1G153000"
Ledus.S1	AUGUSTUS	start_codon	14734412	14734414	.	+	0	transcript_id "Ledus.S1G153000.t1"; gene_id "Ledus.S1G153000"
Ledus.S1	AUGUSTUS	CDS	14734412	14734749	0.58	+	0	transcript_id "Ledus.S1G153000.t1"; gene_id "Ledus.S1G153000"
Ledus.S1	AUGUSTUS	exon	14734412	14734749	.	+	.	transcript_id "Ledus.S1G153000.t1"; gene_id "Ledus.S1G153000"
Ledus.S1	AUGUSTUS	intron	14734750	14734857	.	+	.	transcript_id "Ledus.S1G153000.t1"; gene_id "Ledus.S1G153000"
Ledus.S1	AUGUSTUS	CDS	14734858	14734921	0.7	+	1	transcript_id "Ledus.S1G153000.t1"; gene_id "Ledus.S1G153000"
Ledus.S1	AUGUSTUS	exon	14734858	14734921	.	+	.	transcript_id "Ledus.S1G153000.t1"; gene_id "Ledus.S1G153000"
Ledus.S1	AUGUSTUS	stop_codon	14734922	14734924	.	+	0	transcript_id "Ledus.S1G153000.t1"; gene_id "Ledus.S1G153000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3421.t1 is derived from g856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8177865	8178122	.	-	.	Ledus.S1G084200
Ledus.S1	AUGUSTUS	transcript	8177865	8178122	.	-	.	transcript_id "Ledus.S1G084200.t1"; gene_id "Ledus.S1G084200"
Ledus.S1	AUGUSTUS	stop_codon	8177862	8177864	.	-	0	transcript_id "Ledus.S1G084200.t1"; gene_id "Ledus.S1G084200"
Ledus.S1	AUGUSTUS	CDS	8177865	8178122	0.86	-	0	transcript_id "Ledus.S1G084200.t1"; gene_id "Ledus.S1G084200"
Ledus.S1	AUGUSTUS	exon	8177865	8178122	.	-	.	transcript_id "Ledus.S1G084200.t1"; gene_id "Ledus.S1G084200"
Ledus.S1	AUGUSTUS	start_codon	8178120	8178122	.	-	0	transcript_id "Ledus.S1G084200.t1"; gene_id "Ledus.S1G084200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1537.t1 is derived from g8398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10845180	10846631	.	+	.	Ledus.S2G141900
Ledus.S2	AUGUSTUS	transcript	10845180	10846631	.	+	.	transcript_id "Ledus.S2G141900.t1"; gene_id "Ledus.S2G141900"
Ledus.S2	AUGUSTUS	start_codon	10845180	10845182	.	+	0	transcript_id "Ledus.S2G141900.t1"; gene_id "Ledus.S2G141900"
Ledus.S2	AUGUSTUS	CDS	10845180	10846631	0.91	+	0	transcript_id "Ledus.S2G141900.t1"; gene_id "Ledus.S2G141900"
Ledus.S2	AUGUSTUS	exon	10845180	10846631	.	+	.	transcript_id "Ledus.S2G141900.t1"; gene_id "Ledus.S2G141900"
Ledus.S2	AUGUSTUS	stop_codon	10846632	10846634	.	+	0	transcript_id "Ledus.S2G141900.t1"; gene_id "Ledus.S2G141900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12740.t1 is derived from g6362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14169031	14172008	.	+	.	Ledus.S4G189600
Ledus.S4	AUGUSTUS	transcript	14169031	14172008	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	start_codon	14169031	14169033	.	+	0	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	CDS	14169031	14169190	1	+	0	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	exon	14169031	14169190	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	intron	14169191	14169290	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	CDS	14169291	14169390	1	+	2	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	exon	14169291	14169390	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	intron	14169391	14169508	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	CDS	14169509	14169615	0.97	+	1	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	exon	14169509	14169615	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	intron	14169616	14169742	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	CDS	14169743	14169885	0.99	+	2	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	exon	14169743	14169885	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	intron	14169886	14170005	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	CDS	14170006	14170450	1	+	0	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	exon	14170006	14170450	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	intron	14170451	14170532	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	CDS	14170533	14170708	1	+	2	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	exon	14170533	14170708	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	intron	14170709	14170799	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	CDS	14170800	14170958	1	+	0	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	exon	14170800	14170958	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	intron	14170959	14171049	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	CDS	14171050	14171154	1	+	0	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	exon	14171050	14171154	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	intron	14171155	14171234	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	CDS	14171235	14171336	1	+	0	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	exon	14171235	14171336	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	intron	14171337	14171420	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	CDS	14171421	14171594	0.79	+	0	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	exon	14171421	14171594	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	intron	14171595	14171702	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	CDS	14171703	14172008	0.75	+	0	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	exon	14171703	14172008	.	+	.	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
Ledus.S4	AUGUSTUS	stop_codon	14172009	14172011	.	+	0	transcript_id "Ledus.S4G189600.t1"; gene_id "Ledus.S4G189600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12986.t1 is derived from g6796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1781365	1781640	.	+	.	Ledus.S6G004800
Ledus.S6	AUGUSTUS	transcript	1781365	1781640	.	+	.	transcript_id "Ledus.S6G004800.t1"; gene_id "Ledus.S6G004800"
Ledus.S6	AUGUSTUS	start_codon	1781365	1781367	.	+	0	transcript_id "Ledus.S6G004800.t1"; gene_id "Ledus.S6G004800"
Ledus.S6	AUGUSTUS	CDS	1781365	1781640	0.99	+	0	transcript_id "Ledus.S6G004800.t1"; gene_id "Ledus.S6G004800"
Ledus.S6	AUGUSTUS	exon	1781365	1781640	.	+	.	transcript_id "Ledus.S6G004800.t1"; gene_id "Ledus.S6G004800"
Ledus.S6	AUGUSTUS	stop_codon	1781641	1781643	.	+	0	transcript_id "Ledus.S6G004800.t1"; gene_id "Ledus.S6G004800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10086.t1 is derived from g11116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12566088	12567371	.	+	.	Ledus.S3G156300
Ledus.S3	AUGUSTUS	transcript	12566088	12567371	.	+	.	transcript_id "Ledus.S3G156300.t1"; gene_id "Ledus.S3G156300"
Ledus.S3	AUGUSTUS	start_codon	12566088	12566090	.	+	0	transcript_id "Ledus.S3G156300.t1"; gene_id "Ledus.S3G156300"
Ledus.S3	AUGUSTUS	CDS	12566088	12567371	0.96	+	0	transcript_id "Ledus.S3G156300.t1"; gene_id "Ledus.S3G156300"
Ledus.S3	AUGUSTUS	exon	12566088	12567371	.	+	.	transcript_id "Ledus.S3G156300.t1"; gene_id "Ledus.S3G156300"
Ledus.S3	AUGUSTUS	stop_codon	12567372	12567374	.	+	0	transcript_id "Ledus.S3G156300.t1"; gene_id "Ledus.S3G156300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12496.t1 is derived from g6117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12382385	12386571	.	-	.	Ledus.S4G165200
Ledus.S4	AUGUSTUS	transcript	12382385	12386571	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	stop_codon	12382382	12382384	.	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12382385	12382432	0.41	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12382385	12382432	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12382433	12382549	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12382550	12382696	0.58	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12382550	12382696	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12382697	12382783	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12382784	12382923	0.97	-	2	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12382784	12382923	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12382924	12383022	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12383023	12383086	0.92	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12383023	12383086	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12383087	12383167	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12383168	12383244	0.99	-	2	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12383168	12383244	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12383245	12383345	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12383346	12383496	1	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12383346	12383496	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12383497	12383609	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12383610	12383762	0.99	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12383610	12383762	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12383763	12383894	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12383895	12383956	0.58	-	2	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12383895	12383956	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12383957	12384080	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12384081	12384093	0.47	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12384081	12384093	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12384094	12384202	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12384203	12384300	0.43	-	2	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12384203	12384300	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12384301	12384398	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12384399	12384452	0.98	-	2	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12384399	12384452	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12384453	12384544	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12384545	12384575	1	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12384545	12384575	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12384576	12384690	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12384691	12384843	1	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12384691	12384843	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12384844	12384985	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12384986	12385111	0.99	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12384986	12385111	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12385112	12385303	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12385304	12385345	0.87	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12385304	12385345	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12385346	12385446	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12385447	12385516	0.92	-	1	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12385447	12385516	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12385517	12385735	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12385736	12386108	0.53	-	2	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12385736	12386108	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12386109	12386190	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12386191	12386287	0.97	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12386191	12386287	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12386288	12386380	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12386381	12386452	0.89	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12386381	12386452	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	intron	12386453	12386568	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	CDS	12386569	12386571	0.9	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	exon	12386569	12386571	.	-	.	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
Ledus.S4	AUGUSTUS	start_codon	12386569	12386571	.	-	0	transcript_id "Ledus.S4G165200.t1"; gene_id "Ledus.S4G165200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10379.t1 is derived from g11409.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14598532	14602063	.	+	.	Ledus.S3G185600
Ledus.S3	AUGUSTUS	transcript	14598532	14602063	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	start_codon	14598532	14598534	.	+	0	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	CDS	14598532	14598553	0.79	+	0	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	exon	14598532	14598553	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	intron	14598554	14598792	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	CDS	14598793	14599475	0.98	+	2	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	exon	14598793	14599475	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	intron	14599476	14599644	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	CDS	14599645	14599723	0.94	+	0	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	exon	14599645	14599723	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	intron	14599724	14599932	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	CDS	14599933	14600008	0.96	+	2	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	exon	14599933	14600008	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	intron	14600009	14600188	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	CDS	14600189	14600263	1	+	1	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	exon	14600189	14600263	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	intron	14600264	14600394	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	CDS	14600395	14600551	1	+	1	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	exon	14600395	14600551	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	intron	14600552	14600739	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	CDS	14600740	14600808	1	+	0	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	exon	14600740	14600808	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	intron	14600809	14600952	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	CDS	14600953	14601092	1	+	0	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	exon	14600953	14601092	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	intron	14601093	14601192	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	CDS	14601193	14601315	1	+	1	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	exon	14601193	14601315	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	intron	14601316	14601507	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	CDS	14601508	14601700	1	+	1	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	exon	14601508	14601700	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	intron	14601701	14601877	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	CDS	14601878	14602063	1	+	0	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	exon	14601878	14602063	.	+	.	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
Ledus.S3	AUGUSTUS	stop_codon	14602064	14602066	.	+	0	transcript_id "Ledus.S3G185600.t1"; gene_id "Ledus.S3G185600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4378.t1 is derived from g1814.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16702639	16706274	.	+	.	Ledus.S1G179900
Ledus.S1	AUGUSTUS	transcript	16702639	16706274	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	start_codon	16702639	16702641	.	+	0	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16702639	16702751	0.99	+	0	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16702639	16702751	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16702752	16702832	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16702833	16703000	1	+	1	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16702833	16703000	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16703001	16703145	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16703146	16703214	1	+	1	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16703146	16703214	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16703215	16703388	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16703389	16703482	1	+	1	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16703389	16703482	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16703483	16703638	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16703639	16703745	1	+	0	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16703639	16703745	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16703746	16703884	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16703885	16703930	1	+	1	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16703885	16703930	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16703931	16704153	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16704154	16704213	1	+	0	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16704154	16704213	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16704214	16704409	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16704410	16704478	1	+	0	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16704410	16704478	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16704479	16704683	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16704684	16704767	1	+	0	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16704684	16704767	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16704768	16704967	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16704968	16705057	1	+	0	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16704968	16705057	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16705058	16705214	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16705215	16705300	1	+	0	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16705215	16705300	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16705301	16705430	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16705431	16705521	1	+	1	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16705431	16705521	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16705522	16705610	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16705611	16705691	1	+	0	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16705611	16705691	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16705692	16705776	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16705777	16705887	1	+	0	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16705777	16705887	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16705888	16705965	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16705966	16706099	0.78	+	0	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16705966	16706099	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16706100	16706210	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16706211	16706274	0.77	+	1	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16706211	16706274	.	+	.	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	stop_codon	16706275	16706277	.	+	0	transcript_id "Ledus.S1G179900.t1"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	transcript	16702639	16706274	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	start_codon	16702639	16702641	.	+	0	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16702639	16702751	0.98	+	0	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16702639	16702751	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16702752	16702832	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16702833	16703000	1	+	1	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16702833	16703000	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16703001	16703145	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16703146	16703214	1	+	1	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16703146	16703214	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16703215	16703388	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16703389	16703482	1	+	1	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16703389	16703482	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16703483	16703638	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16703639	16703745	1	+	0	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16703639	16703745	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16703746	16703884	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16703885	16703930	1	+	1	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16703885	16703930	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16703931	16704153	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16704154	16704213	1	+	0	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16704154	16704213	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16704214	16704409	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16704410	16704478	1	+	0	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16704410	16704478	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16704479	16704683	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16704684	16704767	1	+	0	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16704684	16704767	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16704768	16704967	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16704968	16705057	1	+	0	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16704968	16705057	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16705058	16705214	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16705215	16705300	1	+	0	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16705215	16705300	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16705301	16705430	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16705431	16705521	1	+	1	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16705431	16705521	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16705522	16705610	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16705611	16705691	1	+	0	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16705611	16705691	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16705692	16705776	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16705777	16705851	0.7	+	0	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16705777	16705851	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16705852	16705965	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16705966	16706099	0.83	+	0	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16705966	16706099	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	intron	16706100	16706210	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	CDS	16706211	16706274	0.84	+	1	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	exon	16706211	16706274	.	+	.	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
Ledus.S1	AUGUSTUS	stop_codon	16706275	16706277	.	+	0	transcript_id "Ledus.S1G179900.t2"; gene_id "Ledus.S1G179900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg436.t1 is derived from g7297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2510636	2513256	.	+	.	Ledus.S2G031800
Ledus.S2	AUGUSTUS	transcript	2510636	2513256	.	+	.	transcript_id "Ledus.S2G031800.t1"; gene_id "Ledus.S2G031800"
Ledus.S2	AUGUSTUS	start_codon	2510636	2510638	.	+	0	transcript_id "Ledus.S2G031800.t1"; gene_id "Ledus.S2G031800"
Ledus.S2	AUGUSTUS	CDS	2510636	2512108	0.37	+	0	transcript_id "Ledus.S2G031800.t1"; gene_id "Ledus.S2G031800"
Ledus.S2	AUGUSTUS	exon	2510636	2512108	.	+	.	transcript_id "Ledus.S2G031800.t1"; gene_id "Ledus.S2G031800"
Ledus.S2	AUGUSTUS	intron	2512109	2512217	.	+	.	transcript_id "Ledus.S2G031800.t1"; gene_id "Ledus.S2G031800"
Ledus.S2	AUGUSTUS	CDS	2512218	2512370	0.99	+	0	transcript_id "Ledus.S2G031800.t1"; gene_id "Ledus.S2G031800"
Ledus.S2	AUGUSTUS	exon	2512218	2512370	.	+	.	transcript_id "Ledus.S2G031800.t1"; gene_id "Ledus.S2G031800"
Ledus.S2	AUGUSTUS	intron	2512371	2512536	.	+	.	transcript_id "Ledus.S2G031800.t1"; gene_id "Ledus.S2G031800"
Ledus.S2	AUGUSTUS	CDS	2512537	2513256	1	+	0	transcript_id "Ledus.S2G031800.t1"; gene_id "Ledus.S2G031800"
Ledus.S2	AUGUSTUS	exon	2512537	2513256	.	+	.	transcript_id "Ledus.S2G031800.t1"; gene_id "Ledus.S2G031800"
Ledus.S2	AUGUSTUS	stop_codon	2513257	2513259	.	+	0	transcript_id "Ledus.S2G031800.t1"; gene_id "Ledus.S2G031800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9976.t1 is derived from g11006.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11708931	11711143	.	+	.	Ledus.S3G145300
Ledus.S3	AUGUSTUS	transcript	11708931	11711143	.	+	.	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	start_codon	11708931	11708933	.	+	0	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	CDS	11708931	11709025	0.96	+	0	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	exon	11708931	11709025	.	+	.	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	intron	11709026	11709672	.	+	.	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	CDS	11709673	11709712	1	+	1	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	exon	11709673	11709712	.	+	.	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	intron	11709713	11709936	.	+	.	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	CDS	11709937	11710032	1	+	0	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	exon	11709937	11710032	.	+	.	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	intron	11710033	11710211	.	+	.	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	CDS	11710212	11710411	1	+	0	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	exon	11710212	11710411	.	+	.	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	intron	11710412	11710480	.	+	.	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	CDS	11710481	11710564	1	+	1	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	exon	11710481	11710564	.	+	.	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	intron	11710565	11710659	.	+	.	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	CDS	11710660	11711143	0.96	+	1	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	exon	11710660	11711143	.	+	.	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	stop_codon	11711144	11711146	.	+	0	transcript_id "Ledus.S3G145300.t1"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	transcript	11708931	11711143	.	+	.	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	start_codon	11708931	11708933	.	+	0	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	CDS	11708931	11709025	0.93	+	0	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	exon	11708931	11709025	.	+	.	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	intron	11709026	11709672	.	+	.	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	CDS	11709673	11709712	1	+	1	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	exon	11709673	11709712	.	+	.	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	intron	11709713	11709936	.	+	.	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	CDS	11709937	11710050	1	+	0	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	exon	11709937	11710050	.	+	.	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	intron	11710051	11710211	.	+	.	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	CDS	11710212	11710411	1	+	0	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	exon	11710212	11710411	.	+	.	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	intron	11710412	11710480	.	+	.	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	CDS	11710481	11710564	1	+	1	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	exon	11710481	11710564	.	+	.	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	intron	11710565	11710659	.	+	.	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	CDS	11710660	11711143	0.95	+	1	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	exon	11710660	11711143	.	+	.	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
Ledus.S3	AUGUSTUS	stop_codon	11711144	11711146	.	+	0	transcript_id "Ledus.S3G145300.t2"; gene_id "Ledus.S3G145300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12079.t1 is derived from g5698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9424883	9426339	.	-	.	Ledus.S4G123500
Ledus.S4	AUGUSTUS	transcript	9424883	9426339	.	-	.	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	stop_codon	9424880	9424882	.	-	0	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	CDS	9424883	9425073	0.96	-	2	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	exon	9424883	9425073	.	-	.	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	intron	9425074	9425188	.	-	.	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	CDS	9425189	9425384	0.93	-	0	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	exon	9425189	9425384	.	-	.	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	intron	9425385	9425495	.	-	.	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	CDS	9425496	9425696	1	-	0	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	exon	9425496	9425696	.	-	.	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	intron	9425697	9425778	.	-	.	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	CDS	9425779	9425901	0.85	-	0	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	exon	9425779	9425901	.	-	.	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	intron	9425902	9426001	.	-	.	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	CDS	9426002	9426050	0.56	-	1	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	exon	9426002	9426050	.	-	.	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	intron	9426051	9426109	.	-	.	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	CDS	9426110	9426339	0.41	-	0	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	exon	9426110	9426339	.	-	.	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
Ledus.S4	AUGUSTUS	start_codon	9426337	9426339	.	-	0	transcript_id "Ledus.S4G123500.t1"; gene_id "Ledus.S4G123500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8714.t1 is derived from g9744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1557705	1559790	.	+	.	Ledus.S3G019100
Ledus.S3	AUGUSTUS	transcript	1557705	1559790	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	start_codon	1557705	1557707	.	+	0	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	CDS	1557705	1557894	0.89	+	0	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	exon	1557705	1557894	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	intron	1557895	1557995	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	CDS	1557996	1558114	0.99	+	2	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	exon	1557996	1558114	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	intron	1558115	1558218	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	CDS	1558219	1558474	0.97	+	0	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	exon	1558219	1558474	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	intron	1558475	1558565	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	CDS	1558566	1558602	1	+	2	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	exon	1558566	1558602	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	intron	1558603	1558698	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	CDS	1558699	1558804	1	+	1	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	exon	1558699	1558804	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	intron	1558805	1559506	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	CDS	1559507	1559617	1	+	0	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	exon	1559507	1559617	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	intron	1559618	1559688	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	CDS	1559689	1559790	1	+	0	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	exon	1559689	1559790	.	+	.	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
Ledus.S3	AUGUSTUS	stop_codon	1559791	1559793	.	+	0	transcript_id "Ledus.S3G019100.t1"; gene_id "Ledus.S3G019100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6580.t1 is derived from g4023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32484436	32489794	.	+	.	Ledus.S1G400100
Ledus.S1	AUGUSTUS	transcript	32484436	32489794	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	start_codon	32484436	32484438	.	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32484436	32484530	1	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32484436	32484530	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32484531	32484688	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32484689	32485027	1	+	1	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32484689	32485027	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32485028	32485131	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32485132	32485185	0.98	+	1	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32485132	32485185	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32485186	32485289	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32485290	32485518	0.54	+	1	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32485290	32485518	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32485519	32485621	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32485622	32485713	1	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32485622	32485713	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32485714	32485799	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32485800	32485863	1	+	1	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32485800	32485863	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32485864	32485959	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32485960	32486076	1	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32485960	32486076	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32486077	32486154	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32486155	32486229	1	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32486155	32486229	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32486230	32486327	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32486328	32486545	0.59	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32486328	32486545	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32486546	32486860	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32486861	32487047	1	+	1	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32486861	32487047	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32487048	32487115	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32487116	32487310	1	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32487116	32487310	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32487311	32487450	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32487451	32487579	1	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32487451	32487579	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32487580	32487677	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32487678	32487872	1	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32487678	32487872	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32487873	32487986	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32487987	32488034	1	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32487987	32488034	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32488035	32488122	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32488123	32488251	1	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32488123	32488251	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32488252	32488376	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32488377	32488504	1	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32488377	32488504	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32488505	32488595	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32488596	32488706	1	+	1	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32488596	32488706	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32488707	32488775	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32488776	32488917	0.6	+	1	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32488776	32488917	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32488918	32489007	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32489008	32489126	1	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32489008	32489126	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32489127	32489215	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32489216	32489369	1	+	1	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32489216	32489369	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32489370	32489446	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32489447	32489621	1	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32489447	32489621	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	intron	32489622	32489696	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	CDS	32489697	32489794	1	+	2	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	exon	32489697	32489794	.	+	.	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
Ledus.S1	AUGUSTUS	stop_codon	32489795	32489797	.	+	0	transcript_id "Ledus.S1G400100.t1"; gene_id "Ledus.S1G400100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5206.t1 is derived from g2645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22463702	22465564	.	+	.	Ledus.S1G262700
Ledus.S1	AUGUSTUS	transcript	22463702	22465564	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	start_codon	22463702	22463704	.	+	0	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	CDS	22463702	22463783	0.83	+	0	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	exon	22463702	22463783	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	intron	22463784	22463849	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	CDS	22463850	22464030	1	+	2	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	exon	22463850	22464030	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	intron	22464031	22464113	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	CDS	22464114	22464227	1	+	1	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	exon	22464114	22464227	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	intron	22464228	22464309	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	CDS	22464310	22464414	1	+	1	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	exon	22464310	22464414	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	intron	22464415	22464486	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	CDS	22464487	22464593	1	+	1	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	exon	22464487	22464593	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	intron	22464594	22464693	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	CDS	22464694	22464800	1	+	2	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	exon	22464694	22464800	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	intron	22464801	22464882	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	CDS	22464883	22465095	1	+	0	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	exon	22464883	22465095	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	intron	22465096	22465176	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	CDS	22465177	22465229	1	+	0	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	exon	22465177	22465229	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	intron	22465230	22465304	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	CDS	22465305	22465408	1	+	1	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	exon	22465305	22465408	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	intron	22465409	22465499	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	CDS	22465500	22465564	1	+	2	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	exon	22465500	22465564	.	+	.	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
Ledus.S1	AUGUSTUS	stop_codon	22465565	22465567	.	+	0	transcript_id "Ledus.S1G262700.t1"; gene_id "Ledus.S1G262700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11704.t1 is derived from g5323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6104362	6107924	.	+	.	Ledus.S4G086000
Ledus.S4	AUGUSTUS	transcript	6104362	6107924	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	start_codon	6104362	6104364	.	+	0	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6104362	6104422	0.66	+	0	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6104362	6104422	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	intron	6104423	6104668	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6104669	6104731	1	+	2	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6104669	6104731	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	intron	6104732	6104814	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6104815	6104889	1	+	2	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6104815	6104889	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	intron	6104890	6104996	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6104997	6105124	0.89	+	2	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6104997	6105124	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	intron	6105125	6105225	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6105226	6105323	1	+	0	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6105226	6105323	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	intron	6105324	6105412	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6105413	6105503	1	+	1	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6105413	6105503	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	intron	6105504	6105592	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6105593	6105733	1	+	0	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6105593	6105733	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	intron	6105734	6105817	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6105818	6106029	1	+	0	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6105818	6106029	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	intron	6106030	6106118	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6106119	6106392	1	+	1	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6106119	6106392	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	intron	6106393	6106485	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6106486	6106722	1	+	0	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6106486	6106722	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	intron	6106723	6106826	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6106827	6107290	0.98	+	0	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6106827	6107290	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	intron	6107291	6107710	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6107711	6107786	1	+	1	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6107711	6107786	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	intron	6107787	6107921	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	CDS	6107922	6107924	1	+	0	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	exon	6107922	6107924	.	+	.	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
Ledus.S4	AUGUSTUS	stop_codon	6107925	6107927	.	+	0	transcript_id "Ledus.S4G086000.t1"; gene_id "Ledus.S4G086000"
# This transcript jg8268.t2 is derived from g12939.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8269.t1 is derived from g12940.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10332211	10334057	.	-	.	Ledus.S5G104700
Ledus.S5	AUGUSTUS	transcript	10332211	10334057	.	-	.	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	stop_codon	10332208	10332210	.	-	0	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	CDS	10332211	10332579	1	-	0	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	exon	10332211	10332579	.	-	.	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	intron	10332580	10332665	.	-	.	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	CDS	10332666	10332909	1	-	1	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	exon	10332666	10332909	.	-	.	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	intron	10332910	10333003	.	-	.	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	CDS	10333004	10333094	1	-	2	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	exon	10333004	10333094	.	-	.	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	intron	10333095	10333170	.	-	.	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	CDS	10333171	10333410	1	-	2	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	exon	10333171	10333410	.	-	.	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	intron	10333411	10333501	.	-	.	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	CDS	10333502	10333671	1	-	1	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	exon	10333502	10333671	.	-	.	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	intron	10333672	10333881	.	-	.	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	CDS	10333882	10334057	0.91	-	0	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	exon	10333882	10334057	.	-	.	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
Ledus.S5	AUGUSTUS	start_codon	10334055	10334057	.	-	0	transcript_id "Ledus.S5G104700.t1"; gene_id "Ledus.S5G104700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6152.t1 is derived from g3595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29295558	29297245	.	+	.	Ledus.S1G357300
Ledus.S1	AUGUSTUS	transcript	29295558	29297245	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	start_codon	29295558	29295560	.	+	0	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	CDS	29295558	29295705	1	+	0	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	exon	29295558	29295705	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	intron	29295706	29295773	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	CDS	29295774	29295916	1	+	2	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	exon	29295774	29295916	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	intron	29295917	29295997	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	CDS	29295998	29296102	1	+	0	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	exon	29295998	29296102	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	intron	29296103	29296227	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	CDS	29296228	29296353	1	+	0	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	exon	29296228	29296353	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	intron	29296354	29296446	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	CDS	29296447	29296569	1	+	0	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	exon	29296447	29296569	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	intron	29296570	29296652	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	CDS	29296653	29296718	0.98	+	0	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	exon	29296653	29296718	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	intron	29296719	29296985	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	CDS	29296986	29296998	0.98	+	0	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	exon	29296986	29296998	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	intron	29296999	29297087	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	CDS	29297088	29297245	0.69	+	2	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	exon	29297088	29297245	.	+	.	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
Ledus.S1	AUGUSTUS	stop_codon	29297246	29297248	.	+	0	transcript_id "Ledus.S1G357300.t1"; gene_id "Ledus.S1G357300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2180.t1 is derived from g9043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15779265	15781233	.	+	.	Ledus.S2G206200
Ledus.S2	AUGUSTUS	transcript	15779265	15781233	.	+	.	transcript_id "Ledus.S2G206200.t1"; gene_id "Ledus.S2G206200"
Ledus.S2	AUGUSTUS	start_codon	15779265	15779267	.	+	0	transcript_id "Ledus.S2G206200.t1"; gene_id "Ledus.S2G206200"
Ledus.S2	AUGUSTUS	CDS	15779265	15780108	0.87	+	0	transcript_id "Ledus.S2G206200.t1"; gene_id "Ledus.S2G206200"
Ledus.S2	AUGUSTUS	exon	15779265	15780108	.	+	.	transcript_id "Ledus.S2G206200.t1"; gene_id "Ledus.S2G206200"
Ledus.S2	AUGUSTUS	intron	15780109	15780194	.	+	.	transcript_id "Ledus.S2G206200.t1"; gene_id "Ledus.S2G206200"
Ledus.S2	AUGUSTUS	CDS	15780195	15780819	0.8	+	2	transcript_id "Ledus.S2G206200.t1"; gene_id "Ledus.S2G206200"
Ledus.S2	AUGUSTUS	exon	15780195	15780819	.	+	.	transcript_id "Ledus.S2G206200.t1"; gene_id "Ledus.S2G206200"
Ledus.S2	AUGUSTUS	intron	15780820	15781007	.	+	.	transcript_id "Ledus.S2G206200.t1"; gene_id "Ledus.S2G206200"
Ledus.S2	AUGUSTUS	CDS	15781008	15781233	0.81	+	1	transcript_id "Ledus.S2G206200.t1"; gene_id "Ledus.S2G206200"
Ledus.S2	AUGUSTUS	exon	15781008	15781233	.	+	.	transcript_id "Ledus.S2G206200.t1"; gene_id "Ledus.S2G206200"
Ledus.S2	AUGUSTUS	stop_codon	15781234	15781236	.	+	0	transcript_id "Ledus.S2G206200.t1"; gene_id "Ledus.S2G206200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2734.t1 is derived from g168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2683711	2684244	.	+	.	Ledus.S1G015500
Ledus.S1	AUGUSTUS	transcript	2683711	2684244	.	+	.	transcript_id "Ledus.S1G015500.t1"; gene_id "Ledus.S1G015500"
Ledus.S1	AUGUSTUS	start_codon	2683711	2683713	.	+	0	transcript_id "Ledus.S1G015500.t1"; gene_id "Ledus.S1G015500"
Ledus.S1	AUGUSTUS	CDS	2683711	2684244	0.41	+	0	transcript_id "Ledus.S1G015500.t1"; gene_id "Ledus.S1G015500"
Ledus.S1	AUGUSTUS	exon	2683711	2684244	.	+	.	transcript_id "Ledus.S1G015500.t1"; gene_id "Ledus.S1G015500"
Ledus.S1	AUGUSTUS	stop_codon	2684245	2684247	.	+	0	transcript_id "Ledus.S1G015500.t1"; gene_id "Ledus.S1G015500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12295.t1 is derived from g5915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11081755	11084953	.	+	.	Ledus.S4G145100
Ledus.S4	AUGUSTUS	transcript	11081755	11084953	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	start_codon	11081755	11081757	.	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	CDS	11081755	11082222	0.47	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	exon	11081755	11082222	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	intron	11082223	11082311	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	CDS	11082312	11082464	1	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	exon	11082312	11082464	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	intron	11082465	11082555	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	CDS	11082556	11082726	1	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	exon	11082556	11082726	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	intron	11082727	11082809	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	CDS	11082810	11082962	1	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	exon	11082810	11082962	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	intron	11082963	11083138	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	CDS	11083139	11083207	1	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	exon	11083139	11083207	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	intron	11083208	11083303	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	CDS	11083304	11083420	1	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	exon	11083304	11083420	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	intron	11083421	11083531	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	CDS	11083532	11083606	1	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	exon	11083532	11083606	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	intron	11083607	11083806	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	CDS	11083807	11083884	1	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	exon	11083807	11083884	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	intron	11083885	11084002	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	CDS	11084003	11084098	1	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	exon	11084003	11084098	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	intron	11084099	11084191	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	CDS	11084192	11084241	1	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	exon	11084192	11084241	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	intron	11084242	11084333	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	CDS	11084334	11084388	1	+	1	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	exon	11084334	11084388	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	intron	11084389	11084482	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	CDS	11084483	11084953	1	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	exon	11084483	11084953	.	+	.	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
Ledus.S4	AUGUSTUS	stop_codon	11084954	11084956	.	+	0	transcript_id "Ledus.S4G145100.t1"; gene_id "Ledus.S4G145100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1005.t1 is derived from g7866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6601304	6601654	.	-	.	Ledus.S2G088700
Ledus.S2	AUGUSTUS	transcript	6601304	6601654	.	-	.	transcript_id "Ledus.S2G088700.t1"; gene_id "Ledus.S2G088700"
Ledus.S2	AUGUSTUS	stop_codon	6601301	6601303	.	-	0	transcript_id "Ledus.S2G088700.t1"; gene_id "Ledus.S2G088700"
Ledus.S2	AUGUSTUS	CDS	6601304	6601654	0.58	-	0	transcript_id "Ledus.S2G088700.t1"; gene_id "Ledus.S2G088700"
Ledus.S2	AUGUSTUS	exon	6601304	6601654	.	-	.	transcript_id "Ledus.S2G088700.t1"; gene_id "Ledus.S2G088700"
Ledus.S2	AUGUSTUS	start_codon	6601652	6601654	.	-	0	transcript_id "Ledus.S2G088700.t1"; gene_id "Ledus.S2G088700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5518.t1 is derived from g2957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24783736	24784284	.	-	.	Ledus.S1G293900
Ledus.S1	AUGUSTUS	transcript	24783736	24784284	.	-	.	transcript_id "Ledus.S1G293900.t1"; gene_id "Ledus.S1G293900"
Ledus.S1	AUGUSTUS	stop_codon	24783733	24783735	.	-	0	transcript_id "Ledus.S1G293900.t1"; gene_id "Ledus.S1G293900"
Ledus.S1	AUGUSTUS	CDS	24783736	24784284	0.77	-	0	transcript_id "Ledus.S1G293900.t1"; gene_id "Ledus.S1G293900"
Ledus.S1	AUGUSTUS	exon	24783736	24784284	.	-	.	transcript_id "Ledus.S1G293900.t1"; gene_id "Ledus.S1G293900"
Ledus.S1	AUGUSTUS	start_codon	24784282	24784284	.	-	0	transcript_id "Ledus.S1G293900.t1"; gene_id "Ledus.S1G293900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10174.t1 is derived from g11204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13445575	13447530	.	-	.	Ledus.S3G165100
Ledus.S3	AUGUSTUS	transcript	13445575	13447530	.	-	.	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	stop_codon	13445572	13445574	.	-	0	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	CDS	13445575	13445617	0.99	-	1	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	exon	13445575	13445617	.	-	.	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	intron	13445618	13445782	.	-	.	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	CDS	13445783	13445850	1	-	0	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	exon	13445783	13445850	.	-	.	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	intron	13445851	13446504	.	-	.	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	CDS	13446505	13446639	1	-	0	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	exon	13446505	13446639	.	-	.	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	intron	13446640	13446722	.	-	.	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	CDS	13446723	13446809	1	-	0	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	exon	13446723	13446809	.	-	.	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	intron	13446810	13446888	.	-	.	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	CDS	13446889	13447431	0.99	-	0	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	exon	13446889	13447431	.	-	.	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	intron	13447432	13447515	.	-	.	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	CDS	13447516	13447530	0.94	-	0	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	exon	13447516	13447530	.	-	.	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
Ledus.S3	AUGUSTUS	start_codon	13447528	13447530	.	-	0	transcript_id "Ledus.S3G165100.t1"; gene_id "Ledus.S3G165100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11524.t1 is derived from g5142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5115275	5117287	.	+	.	Ledus.S4G068000
Ledus.S4	AUGUSTUS	transcript	5115275	5117287	.	+	.	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	start_codon	5115275	5115277	.	+	0	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	CDS	5115275	5115464	0.7	+	0	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	exon	5115275	5115464	.	+	.	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	intron	5115465	5115556	.	+	.	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	CDS	5115557	5115646	1	+	2	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	exon	5115557	5115646	.	+	.	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	intron	5115647	5115746	.	+	.	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	CDS	5115747	5116028	1	+	2	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	exon	5115747	5116028	.	+	.	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	intron	5116029	5116127	.	+	.	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	CDS	5116128	5116338	0.7	+	2	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	exon	5116128	5116338	.	+	.	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	intron	5116339	5116440	.	+	.	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	CDS	5116441	5117287	0.99	+	1	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	exon	5116441	5117287	.	+	.	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
Ledus.S4	AUGUSTUS	stop_codon	5117288	5117290	.	+	0	transcript_id "Ledus.S4G068000.t1"; gene_id "Ledus.S4G068000"
# This transcript jg1471.t2 is derived from g8332.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1472.t1 is derived from g8333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10378811	10380880	.	-	.	Ledus.S2G135400
Ledus.S2	AUGUSTUS	transcript	10378811	10380880	.	-	.	transcript_id "Ledus.S2G135400.t1"; gene_id "Ledus.S2G135400"
Ledus.S2	AUGUSTUS	stop_codon	10378808	10378810	.	-	0	transcript_id "Ledus.S2G135400.t1"; gene_id "Ledus.S2G135400"
Ledus.S2	AUGUSTUS	CDS	10378811	10380880	0.95	-	0	transcript_id "Ledus.S2G135400.t1"; gene_id "Ledus.S2G135400"
Ledus.S2	AUGUSTUS	exon	10378811	10380880	.	-	.	transcript_id "Ledus.S2G135400.t1"; gene_id "Ledus.S2G135400"
Ledus.S2	AUGUSTUS	start_codon	10380878	10380880	.	-	0	transcript_id "Ledus.S2G135400.t1"; gene_id "Ledus.S2G135400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4800.t1 is derived from g2238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19830444	19830722	.	-	.	Ledus.S1G222100
Ledus.S1	AUGUSTUS	transcript	19830444	19830722	.	-	.	transcript_id "Ledus.S1G222100.t1"; gene_id "Ledus.S1G222100"
Ledus.S1	AUGUSTUS	stop_codon	19830441	19830443	.	-	0	transcript_id "Ledus.S1G222100.t1"; gene_id "Ledus.S1G222100"
Ledus.S1	AUGUSTUS	CDS	19830444	19830722	0.69	-	0	transcript_id "Ledus.S1G222100.t1"; gene_id "Ledus.S1G222100"
Ledus.S1	AUGUSTUS	exon	19830444	19830722	.	-	.	transcript_id "Ledus.S1G222100.t1"; gene_id "Ledus.S1G222100"
Ledus.S1	AUGUSTUS	start_codon	19830720	19830722	.	-	0	transcript_id "Ledus.S1G222100.t1"; gene_id "Ledus.S1G222100"
# This transcript jg1549.t2 is derived from g8410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1550.t1 is derived from g8411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10887306	10889633	.	+	.	Ledus.S2G143200
Ledus.S2	AUGUSTUS	transcript	10887306	10889633	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	start_codon	10887306	10887308	.	+	0	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	CDS	10887306	10887463	0.96	+	0	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	exon	10887306	10887463	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	intron	10887464	10887684	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	CDS	10887685	10887769	1	+	1	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	exon	10887685	10887769	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	intron	10887770	10887897	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	CDS	10887898	10887995	1	+	0	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	exon	10887898	10887995	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	intron	10887996	10888112	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	CDS	10888113	10888168	1	+	1	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	exon	10888113	10888168	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	intron	10888169	10888317	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	CDS	10888318	10888435	1	+	2	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	exon	10888318	10888435	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	intron	10888436	10888530	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	CDS	10888531	10888558	1	+	1	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	exon	10888531	10888558	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	intron	10888559	10888700	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	CDS	10888701	10888792	1	+	0	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	exon	10888701	10888792	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	intron	10888793	10888886	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	CDS	10888887	10889043	1	+	1	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	exon	10888887	10889043	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	intron	10889044	10889128	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	CDS	10889129	10889253	1	+	0	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	exon	10889129	10889253	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	intron	10889254	10889367	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	CDS	10889368	10889467	1	+	1	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	exon	10889368	10889467	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	intron	10889468	10889564	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	CDS	10889565	10889633	1	+	0	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	exon	10889565	10889633	.	+	.	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
Ledus.S2	AUGUSTUS	stop_codon	10889634	10889636	.	+	0	transcript_id "Ledus.S2G143200.t1"; gene_id "Ledus.S2G143200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg84.t1 is derived from g9497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	358111	360249	.	-	.	Ledus.C8G004400
Ledus.C8	AUGUSTUS	transcript	358111	360249	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	stop_codon	358108	358110	.	-	0	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	358111	358128	1	-	0	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	358111	358128	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	358129	358218	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	358219	358347	1	-	0	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	358219	358347	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	358348	358446	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	358447	358497	1	-	0	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	358447	358497	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	358498	358585	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	358586	358702	1	-	0	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	358586	358702	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	358703	358783	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	358784	358858	1	-	0	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	358784	358858	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	358859	358953	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	358954	359022	1	-	0	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	358954	359022	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	359023	359103	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	359104	359135	1	-	2	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	359104	359135	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	359136	359215	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	359216	359294	1	-	0	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	359216	359294	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	359295	359380	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	359381	359422	1	-	0	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	359381	359422	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	359423	359511	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	359512	359563	1	-	1	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	359512	359563	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	359564	359637	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	359638	359717	1	-	0	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	359638	359717	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	359718	359799	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	359800	360146	1	-	2	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	359800	360146	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	360147	360221	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	360222	360249	1	-	0	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	360222	360249	.	-	.	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	start_codon	360247	360249	.	-	0	transcript_id "Ledus.C8G004400.t1"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	transcript	358111	360249	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	stop_codon	358108	358110	.	-	0	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	358111	358128	1	-	0	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	358111	358128	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	358129	358218	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	358219	358347	1	-	0	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	358219	358347	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	358348	358446	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	358447	358497	1	-	0	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	358447	358497	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	358498	358585	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	358586	358702	1	-	0	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	358586	358702	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	358703	358783	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	358784	358858	1	-	0	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	358784	358858	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	358859	358953	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	358954	359022	1	-	0	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	358954	359022	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	359023	359103	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	359104	359126	0.8	-	2	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	359104	359126	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	359127	359215	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	359216	359294	1	-	0	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	359216	359294	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	359295	359380	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	359381	359422	1	-	0	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	359381	359422	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	359423	359511	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	359512	359563	1	-	1	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	359512	359563	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	359564	359637	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	359638	359717	1	-	0	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	359638	359717	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	359718	359799	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	359800	360146	0.98	-	2	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	359800	360146	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	intron	360147	360221	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	CDS	360222	360249	0.98	-	0	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	exon	360222	360249	.	-	.	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
Ledus.C8	AUGUSTUS	start_codon	360247	360249	.	-	0	transcript_id "Ledus.C8G004400.t2"; gene_id "Ledus.C8G004400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4181.t1 is derived from g1617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15218491	15221927	.	+	.	Ledus.S1G160200
Ledus.S1	AUGUSTUS	transcript	15218491	15221927	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	start_codon	15218491	15218493	.	+	0	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15218491	15219021	0.47	+	0	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15218491	15219021	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15219022	15219101	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15219102	15219188	1	+	0	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15219102	15219188	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15219189	15219319	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15219320	15219454	1	+	0	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15219320	15219454	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15219455	15219541	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15219542	15219597	1	+	0	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15219542	15219597	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15219598	15219709	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15219710	15219823	1	+	1	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15219710	15219823	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15219824	15220139	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15220140	15220249	1	+	1	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15220140	15220249	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15220250	15220336	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15220337	15220464	1	+	2	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15220337	15220464	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15220465	15220559	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15220560	15220627	1	+	0	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15220560	15220627	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15220628	15220717	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15220718	15220784	1	+	1	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15220718	15220784	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15220785	15220885	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15220886	15221149	1	+	0	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15220886	15221149	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15221150	15221244	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15221245	15221363	1	+	0	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15221245	15221363	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15221364	15221457	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15221458	15221524	1	+	1	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15221458	15221524	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15221525	15221646	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15221647	15221743	1	+	0	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15221647	15221743	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	intron	15221744	15221838	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	CDS	15221839	15221927	1	+	2	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	exon	15221839	15221927	.	+	.	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
Ledus.S1	AUGUSTUS	stop_codon	15221928	15221930	.	+	0	transcript_id "Ledus.S1G160200.t1"; gene_id "Ledus.S1G160200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg6097.t1 is derived from g3540.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28900096	28902150	.	-	.	Ledus.S1G351800
Ledus.S1	AUGUSTUS	transcript	28900096	28902150	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	stop_codon	28900093	28900095	.	-	0	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28900096	28900189	0.94	-	1	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28900096	28900189	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28900190	28900269	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28900270	28901047	0.97	-	2	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28900270	28901047	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901048	28901143	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901144	28901194	1	-	2	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901144	28901194	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901195	28901279	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901280	28901349	1	-	0	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901280	28901349	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901350	28901435	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901436	28901561	1	-	0	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901436	28901561	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901562	28901640	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901641	28901885	1	-	2	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901641	28901885	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901886	28901984	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901985	28902150	0.95	-	0	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901985	28902150	.	-	.	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	start_codon	28902148	28902150	.	-	0	transcript_id "Ledus.S1G351800.t1"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	transcript	28900096	28902150	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	stop_codon	28900093	28900095	.	-	0	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28900096	28900189	0.93	-	1	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28900096	28900189	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28900190	28900269	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28900270	28901047	0.98	-	2	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28900270	28901047	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901048	28901143	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901144	28901194	1	-	2	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901144	28901194	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901195	28901279	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901280	28901349	1	-	0	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901280	28901349	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901350	28901435	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901436	28901561	1	-	0	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901436	28901561	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901562	28901640	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901641	28901885	1	-	2	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901641	28901885	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901886	28902143	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28902144	28902150	0.88	-	0	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28902144	28902150	.	-	.	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	start_codon	28902148	28902150	.	-	0	transcript_id "Ledus.S1G351800.t2"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	transcript	28900096	28902150	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	stop_codon	28900093	28900095	.	-	0	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28900096	28900189	0.94	-	1	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28900096	28900189	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28900190	28900269	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28900270	28901047	0.96	-	2	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28900270	28901047	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901048	28901143	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901144	28901182	0.95	-	2	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901144	28901182	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901183	28901279	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901280	28901349	1	-	0	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901280	28901349	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901350	28901435	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901436	28901561	1	-	0	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901436	28901561	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901562	28901640	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901641	28901885	1	-	2	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901641	28901885	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	intron	28901886	28901984	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	CDS	28901985	28902150	0.91	-	0	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	exon	28901985	28902150	.	-	.	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
Ledus.S1	AUGUSTUS	start_codon	28902148	28902150	.	-	0	transcript_id "Ledus.S1G351800.t3"; gene_id "Ledus.S1G351800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8307.t1 is derived from g12979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10629254	10629925	.	-	.	Ledus.S5G108500
Ledus.S5	AUGUSTUS	transcript	10629254	10629925	.	-	.	transcript_id "Ledus.S5G108500.t1"; gene_id "Ledus.S5G108500"
Ledus.S5	AUGUSTUS	stop_codon	10629251	10629253	.	-	0	transcript_id "Ledus.S5G108500.t1"; gene_id "Ledus.S5G108500"
Ledus.S5	AUGUSTUS	CDS	10629254	10629925	0.87	-	0	transcript_id "Ledus.S5G108500.t1"; gene_id "Ledus.S5G108500"
Ledus.S5	AUGUSTUS	exon	10629254	10629925	.	-	.	transcript_id "Ledus.S5G108500.t1"; gene_id "Ledus.S5G108500"
Ledus.S5	AUGUSTUS	start_codon	10629923	10629925	.	-	0	transcript_id "Ledus.S5G108500.t1"; gene_id "Ledus.S5G108500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3577.t1 is derived from g1013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9758161	9758783	.	+	.	Ledus.S1G099800
Ledus.S1	AUGUSTUS	transcript	9758161	9758783	.	+	.	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	start_codon	9758161	9758163	.	+	0	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	CDS	9758161	9758218	1	+	0	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	exon	9758161	9758218	.	+	.	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	intron	9758219	9758281	.	+	.	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	CDS	9758282	9758362	1	+	2	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	exon	9758282	9758362	.	+	.	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	intron	9758363	9758430	.	+	.	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	CDS	9758431	9758549	1	+	2	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	exon	9758431	9758549	.	+	.	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	intron	9758550	9758627	.	+	.	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	CDS	9758628	9758783	1	+	0	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	exon	9758628	9758783	.	+	.	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
Ledus.S1	AUGUSTUS	stop_codon	9758784	9758786	.	+	0	transcript_id "Ledus.S1G099800.t1"; gene_id "Ledus.S1G099800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12826.t1 is derived from g6448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15150591	15151253	.	-	.	Ledus.S4G198200
Ledus.S4	AUGUSTUS	transcript	15150591	15151253	.	-	.	transcript_id "Ledus.S4G198200.t1"; gene_id "Ledus.S4G198200"
Ledus.S4	AUGUSTUS	stop_codon	15150588	15150590	.	-	0	transcript_id "Ledus.S4G198200.t1"; gene_id "Ledus.S4G198200"
Ledus.S4	AUGUSTUS	CDS	15150591	15150898	0.37	-	2	transcript_id "Ledus.S4G198200.t1"; gene_id "Ledus.S4G198200"
Ledus.S4	AUGUSTUS	exon	15150591	15150898	.	-	.	transcript_id "Ledus.S4G198200.t1"; gene_id "Ledus.S4G198200"
Ledus.S4	AUGUSTUS	intron	15150899	15151132	.	-	.	transcript_id "Ledus.S4G198200.t1"; gene_id "Ledus.S4G198200"
Ledus.S4	AUGUSTUS	CDS	15151133	15151253	0.27	-	0	transcript_id "Ledus.S4G198200.t1"; gene_id "Ledus.S4G198200"
Ledus.S4	AUGUSTUS	exon	15151133	15151253	.	-	.	transcript_id "Ledus.S4G198200.t1"; gene_id "Ledus.S4G198200"
Ledus.S4	AUGUSTUS	start_codon	15151251	15151253	.	-	0	transcript_id "Ledus.S4G198200.t1"; gene_id "Ledus.S4G198200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8549.t1 is derived from g9579.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	126472	128284	.	-	.	Ledus.S3G002600
Ledus.S3	AUGUSTUS	transcript	126472	128284	.	-	.	transcript_id "Ledus.S3G002600.t1"; gene_id "Ledus.S3G002600"
Ledus.S3	AUGUSTUS	stop_codon	126469	126471	.	-	0	transcript_id "Ledus.S3G002600.t1"; gene_id "Ledus.S3G002600"
Ledus.S3	AUGUSTUS	CDS	126472	126595	0.86	-	1	transcript_id "Ledus.S3G002600.t1"; gene_id "Ledus.S3G002600"
Ledus.S3	AUGUSTUS	exon	126472	126595	.	-	.	transcript_id "Ledus.S3G002600.t1"; gene_id "Ledus.S3G002600"
Ledus.S3	AUGUSTUS	intron	126596	126869	.	-	.	transcript_id "Ledus.S3G002600.t1"; gene_id "Ledus.S3G002600"
Ledus.S3	AUGUSTUS	CDS	126870	126998	0.86	-	1	transcript_id "Ledus.S3G002600.t1"; gene_id "Ledus.S3G002600"
Ledus.S3	AUGUSTUS	exon	126870	126998	.	-	.	transcript_id "Ledus.S3G002600.t1"; gene_id "Ledus.S3G002600"
Ledus.S3	AUGUSTUS	intron	126999	128102	.	-	.	transcript_id "Ledus.S3G002600.t1"; gene_id "Ledus.S3G002600"
Ledus.S3	AUGUSTUS	CDS	128103	128284	0.72	-	0	transcript_id "Ledus.S3G002600.t1"; gene_id "Ledus.S3G002600"
Ledus.S3	AUGUSTUS	exon	128103	128284	.	-	.	transcript_id "Ledus.S3G002600.t1"; gene_id "Ledus.S3G002600"
Ledus.S3	AUGUSTUS	start_codon	128282	128284	.	-	0	transcript_id "Ledus.S3G002600.t1"; gene_id "Ledus.S3G002600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3798.t1 is derived from g1234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12307856	12309089	.	+	.	Ledus.S1G121900
Ledus.S1	AUGUSTUS	transcript	12307856	12309089	.	+	.	transcript_id "Ledus.S1G121900.t1"; gene_id "Ledus.S1G121900"
Ledus.S1	AUGUSTUS	start_codon	12307856	12307858	.	+	0	transcript_id "Ledus.S1G121900.t1"; gene_id "Ledus.S1G121900"
Ledus.S1	AUGUSTUS	CDS	12307856	12308083	1	+	0	transcript_id "Ledus.S1G121900.t1"; gene_id "Ledus.S1G121900"
Ledus.S1	AUGUSTUS	exon	12307856	12308083	.	+	.	transcript_id "Ledus.S1G121900.t1"; gene_id "Ledus.S1G121900"
Ledus.S1	AUGUSTUS	intron	12308084	12308172	.	+	.	transcript_id "Ledus.S1G121900.t1"; gene_id "Ledus.S1G121900"
Ledus.S1	AUGUSTUS	CDS	12308173	12308279	1	+	0	transcript_id "Ledus.S1G121900.t1"; gene_id "Ledus.S1G121900"
Ledus.S1	AUGUSTUS	exon	12308173	12308279	.	+	.	transcript_id "Ledus.S1G121900.t1"; gene_id "Ledus.S1G121900"
Ledus.S1	AUGUSTUS	intron	12308280	12308344	.	+	.	transcript_id "Ledus.S1G121900.t1"; gene_id "Ledus.S1G121900"
Ledus.S1	AUGUSTUS	CDS	12308345	12309089	0.8	+	1	transcript_id "Ledus.S1G121900.t1"; gene_id "Ledus.S1G121900"
Ledus.S1	AUGUSTUS	exon	12308345	12309089	.	+	.	transcript_id "Ledus.S1G121900.t1"; gene_id "Ledus.S1G121900"
Ledus.S1	AUGUSTUS	stop_codon	12309090	12309092	.	+	0	transcript_id "Ledus.S1G121900.t1"; gene_id "Ledus.S1G121900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1289.t1 is derived from g8150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9092989	9093469	.	+	.	Ledus.S2G117100
Ledus.S2	AUGUSTUS	transcript	9092989	9093469	.	+	.	transcript_id "Ledus.S2G117100.t1"; gene_id "Ledus.S2G117100"
Ledus.S2	AUGUSTUS	start_codon	9092989	9092991	.	+	0	transcript_id "Ledus.S2G117100.t1"; gene_id "Ledus.S2G117100"
Ledus.S2	AUGUSTUS	CDS	9092989	9093019	0.45	+	0	transcript_id "Ledus.S2G117100.t1"; gene_id "Ledus.S2G117100"
Ledus.S2	AUGUSTUS	exon	9092989	9093019	.	+	.	transcript_id "Ledus.S2G117100.t1"; gene_id "Ledus.S2G117100"
Ledus.S2	AUGUSTUS	intron	9093020	9093125	.	+	.	transcript_id "Ledus.S2G117100.t1"; gene_id "Ledus.S2G117100"
Ledus.S2	AUGUSTUS	CDS	9093126	9093469	0.58	+	2	transcript_id "Ledus.S2G117100.t1"; gene_id "Ledus.S2G117100"
Ledus.S2	AUGUSTUS	exon	9093126	9093469	.	+	.	transcript_id "Ledus.S2G117100.t1"; gene_id "Ledus.S2G117100"
Ledus.S2	AUGUSTUS	stop_codon	9093470	9093472	.	+	0	transcript_id "Ledus.S2G117100.t1"; gene_id "Ledus.S2G117100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3461.t1 is derived from g896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8496246	8497076	.	+	.	Ledus.S1G088200
Ledus.S1	AUGUSTUS	transcript	8496246	8497076	.	+	.	transcript_id "Ledus.S1G088200.t1"; gene_id "Ledus.S1G088200"
Ledus.S1	AUGUSTUS	start_codon	8496246	8496248	.	+	0	transcript_id "Ledus.S1G088200.t1"; gene_id "Ledus.S1G088200"
Ledus.S1	AUGUSTUS	CDS	8496246	8497076	0.95	+	0	transcript_id "Ledus.S1G088200.t1"; gene_id "Ledus.S1G088200"
Ledus.S1	AUGUSTUS	exon	8496246	8497076	.	+	.	transcript_id "Ledus.S1G088200.t1"; gene_id "Ledus.S1G088200"
Ledus.S1	AUGUSTUS	stop_codon	8497077	8497079	.	+	0	transcript_id "Ledus.S1G088200.t1"; gene_id "Ledus.S1G088200"
Ledus.S1	AUGUSTUS	transcript	8496399	8497076	.	+	.	transcript_id "Ledus.S1G088200.t2"; gene_id "Ledus.S1G088200"
Ledus.S1	AUGUSTUS	start_codon	8496399	8496401	.	+	0	transcript_id "Ledus.S1G088200.t2"; gene_id "Ledus.S1G088200"
Ledus.S1	AUGUSTUS	CDS	8496399	8497076	0.74	+	0	transcript_id "Ledus.S1G088200.t2"; gene_id "Ledus.S1G088200"
Ledus.S1	AUGUSTUS	exon	8496399	8497076	.	+	.	transcript_id "Ledus.S1G088200.t2"; gene_id "Ledus.S1G088200"
Ledus.S1	AUGUSTUS	stop_codon	8497077	8497079	.	+	0	transcript_id "Ledus.S1G088200.t2"; gene_id "Ledus.S1G088200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3300.t1 is derived from g735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7375283	7377290	.	+	.	Ledus.S1G072100
Ledus.S1	AUGUSTUS	transcript	7375283	7377290	.	+	.	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	start_codon	7375283	7375285	.	+	0	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	CDS	7375283	7375352	1	+	0	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	exon	7375283	7375352	.	+	.	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	intron	7375353	7375657	.	+	.	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	CDS	7375658	7376935	0.99	+	2	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	exon	7375658	7376935	.	+	.	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	intron	7376936	7377047	.	+	.	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	CDS	7377048	7377075	0.97	+	2	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	exon	7377048	7377075	.	+	.	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	intron	7377076	7377202	.	+	.	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	CDS	7377203	7377290	0.97	+	1	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	exon	7377203	7377290	.	+	.	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
Ledus.S1	AUGUSTUS	stop_codon	7377291	7377293	.	+	0	transcript_id "Ledus.S1G072100.t1"; gene_id "Ledus.S1G072100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1447.t1 is derived from g8308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10247939	10251980	.	-	.	Ledus.S2G132900
Ledus.S2	AUGUSTUS	transcript	10247939	10251980	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	stop_codon	10247936	10247938	.	-	0	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10247939	10247981	1	-	1	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10247939	10247981	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10247982	10248081	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10248082	10248202	0.6	-	2	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10248082	10248202	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10248203	10248419	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10248420	10248456	0.91	-	0	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10248420	10248456	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10248457	10248540	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10248541	10248649	1	-	1	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10248541	10248649	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10248650	10248742	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10248743	10248819	1	-	0	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10248743	10248819	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10248820	10249014	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10249015	10249093	1	-	1	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10249015	10249093	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10249094	10249236	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10249237	10249326	0.99	-	1	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10249237	10249326	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10249327	10249435	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10249436	10249560	1	-	0	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10249436	10249560	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10249561	10249653	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10249654	10249834	1	-	1	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10249654	10249834	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10249835	10249971	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10249972	10250165	0.99	-	0	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10249972	10250165	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10250166	10250289	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10250290	10250693	1	-	2	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10250290	10250693	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10250694	10250855	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10250856	10250938	1	-	1	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10250856	10250938	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10250939	10251168	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10251169	10251980	0.98	-	0	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10251169	10251980	.	-	.	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	start_codon	10251978	10251980	.	-	0	transcript_id "Ledus.S2G132900.t1"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	transcript	10247939	10251980	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	stop_codon	10247936	10247938	.	-	0	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10247939	10247981	1	-	1	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10247939	10247981	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10247982	10248081	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10248082	10248202	0.67	-	2	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10248082	10248202	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10248203	10248419	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10248420	10248456	0.86	-	0	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10248420	10248456	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10248457	10248540	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10248541	10248649	1	-	1	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10248541	10248649	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10248650	10248742	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10248743	10248819	1	-	0	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10248743	10248819	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10248820	10249014	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10249015	10249093	1	-	1	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10249015	10249093	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10249094	10249236	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10249237	10249326	0.99	-	1	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10249237	10249326	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10249327	10249435	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10249436	10249560	1	-	0	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10249436	10249560	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10249561	10249653	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10249654	10249834	1	-	1	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10249654	10249834	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10249835	10249971	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10249972	10250165	0.96	-	0	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10249972	10250165	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10250166	10250289	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10250290	10250693	1	-	2	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10250290	10250693	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10250694	10250855	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10250856	10250871	0.53	-	0	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10250856	10250871	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10250872	10250989	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10250990	10251092	0.45	-	1	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10250990	10251092	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	intron	10251093	10251168	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	CDS	10251169	10251980	0.96	-	0	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	exon	10251169	10251980	.	-	.	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
Ledus.S2	AUGUSTUS	start_codon	10251978	10251980	.	-	0	transcript_id "Ledus.S2G132900.t2"; gene_id "Ledus.S2G132900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2317.t1 is derived from g9180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17146638	17147851	.	+	.	Ledus.S2G219900
Ledus.S2	AUGUSTUS	transcript	17146638	17147851	.	+	.	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	start_codon	17146638	17146640	.	+	0	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	CDS	17146638	17147234	0.26	+	0	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	exon	17146638	17147234	.	+	.	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	intron	17147235	17147332	.	+	.	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	CDS	17147333	17147365	0.71	+	0	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	exon	17147333	17147365	.	+	.	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	intron	17147366	17147623	.	+	.	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	CDS	17147624	17147690	0.92	+	0	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	exon	17147624	17147690	.	+	.	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	intron	17147691	17147777	.	+	.	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	CDS	17147778	17147851	1	+	2	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	exon	17147778	17147851	.	+	.	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
Ledus.S2	AUGUSTUS	stop_codon	17147852	17147854	.	+	0	transcript_id "Ledus.S2G219900.t1"; gene_id "Ledus.S2G219900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10146.t1 is derived from g11176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13145313	13146752	.	-	.	Ledus.S3G162300
Ledus.S3	AUGUSTUS	transcript	13145313	13146752	.	-	.	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	stop_codon	13145310	13145312	.	-	0	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	CDS	13145313	13145468	0.71	-	0	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	exon	13145313	13145468	.	-	.	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	intron	13145469	13145579	.	-	.	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	CDS	13145580	13145763	0.98	-	1	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	exon	13145580	13145763	.	-	.	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	intron	13145764	13146011	.	-	.	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	CDS	13146012	13146124	1	-	0	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	exon	13146012	13146124	.	-	.	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	intron	13146125	13146219	.	-	.	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	CDS	13146220	13146408	1	-	0	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	exon	13146220	13146408	.	-	.	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	intron	13146409	13146542	.	-	.	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	CDS	13146543	13146752	1	-	0	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	exon	13146543	13146752	.	-	.	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
Ledus.S3	AUGUSTUS	start_codon	13146750	13146752	.	-	0	transcript_id "Ledus.S3G162300.t1"; gene_id "Ledus.S3G162300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4047.t1 is derived from g1483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14309914	14313043	.	+	.	Ledus.S1G146800
Ledus.S1	AUGUSTUS	transcript	14309914	14313043	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	start_codon	14309914	14309916	.	+	0	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	CDS	14309914	14309998	0.5	+	0	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	exon	14309914	14309998	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	intron	14309999	14310233	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	CDS	14310234	14310379	0.36	+	2	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	exon	14310234	14310379	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	intron	14310380	14310461	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	CDS	14310462	14310501	0.75	+	0	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	exon	14310462	14310501	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	intron	14310502	14310620	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	CDS	14310621	14310844	0.93	+	2	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	exon	14310621	14310844	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	intron	14310845	14311011	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	CDS	14311012	14311221	0.91	+	0	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	exon	14311012	14311221	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	intron	14311222	14311351	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	CDS	14311352	14311574	0.45	+	0	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	exon	14311352	14311574	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	intron	14311575	14311726	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	CDS	14311727	14312013	0.91	+	2	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	exon	14311727	14312013	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	intron	14312014	14312157	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	CDS	14312158	14312353	0.7	+	0	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	exon	14312158	14312353	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	intron	14312354	14312542	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	CDS	14312543	14312699	0.73	+	2	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	exon	14312543	14312699	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	intron	14312700	14312789	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	CDS	14312790	14312849	0.79	+	1	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	exon	14312790	14312849	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	intron	14312850	14312931	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	CDS	14312932	14313043	0.48	+	1	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	exon	14312932	14313043	.	+	.	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
Ledus.S1	AUGUSTUS	stop_codon	14313044	14313046	.	+	0	transcript_id "Ledus.S1G146800.t1"; gene_id "Ledus.S1G146800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9828.t1 is derived from g10858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10296770	10298335	.	-	.	Ledus.S3G130500
Ledus.S3	AUGUSTUS	transcript	10296770	10298335	.	-	.	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	stop_codon	10296767	10296769	.	-	0	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	CDS	10296770	10296883	1	-	0	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	exon	10296770	10296883	.	-	.	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	intron	10296884	10296994	.	-	.	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	CDS	10296995	10297120	1	-	0	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	exon	10296995	10297120	.	-	.	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	intron	10297121	10297322	.	-	.	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	CDS	10297323	10297388	0.94	-	0	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	exon	10297323	10297388	.	-	.	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	intron	10297389	10297643	.	-	.	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	CDS	10297644	10297796	0.55	-	0	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	exon	10297644	10297796	.	-	.	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	intron	10297797	10297864	.	-	.	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	CDS	10297865	10298335	0.91	-	0	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	exon	10297865	10298335	.	-	.	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
Ledus.S3	AUGUSTUS	start_codon	10298333	10298335	.	-	0	transcript_id "Ledus.S3G130500.t1"; gene_id "Ledus.S3G130500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4434.t1 is derived from g1870.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17098528	17101136	.	-	.	Ledus.S1G185500
Ledus.S1	AUGUSTUS	transcript	17098528	17101136	.	-	.	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	stop_codon	17098525	17098527	.	-	0	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	CDS	17098528	17098743	1	-	0	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	exon	17098528	17098743	.	-	.	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	intron	17098744	17098870	.	-	.	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	CDS	17098871	17099083	1	-	0	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	exon	17098871	17099083	.	-	.	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	intron	17099084	17099174	.	-	.	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	CDS	17099175	17099345	1	-	0	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	exon	17099175	17099345	.	-	.	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	intron	17099346	17099463	.	-	.	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	CDS	17099464	17099580	0.99	-	0	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	exon	17099464	17099580	.	-	.	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	intron	17099581	17100965	.	-	.	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	CDS	17100966	17101136	1	-	0	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	exon	17100966	17101136	.	-	.	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
Ledus.S1	AUGUSTUS	start_codon	17101134	17101136	.	-	0	transcript_id "Ledus.S1G185500.t1"; gene_id "Ledus.S1G185500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7648.t1 is derived from g12319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4807418	4808566	.	-	.	Ledus.S5G042600
Ledus.S5	AUGUSTUS	transcript	4807418	4808566	.	-	.	transcript_id "Ledus.S5G042600.t1"; gene_id "Ledus.S5G042600"
Ledus.S5	AUGUSTUS	stop_codon	4807415	4807417	.	-	0	transcript_id "Ledus.S5G042600.t1"; gene_id "Ledus.S5G042600"
Ledus.S5	AUGUSTUS	CDS	4807418	4807645	0.86	-	0	transcript_id "Ledus.S5G042600.t1"; gene_id "Ledus.S5G042600"
Ledus.S5	AUGUSTUS	exon	4807418	4807645	.	-	.	transcript_id "Ledus.S5G042600.t1"; gene_id "Ledus.S5G042600"
Ledus.S5	AUGUSTUS	intron	4807646	4808206	.	-	.	transcript_id "Ledus.S5G042600.t1"; gene_id "Ledus.S5G042600"
Ledus.S5	AUGUSTUS	CDS	4808207	4808566	0.57	-	0	transcript_id "Ledus.S5G042600.t1"; gene_id "Ledus.S5G042600"
Ledus.S5	AUGUSTUS	exon	4808207	4808566	.	-	.	transcript_id "Ledus.S5G042600.t1"; gene_id "Ledus.S5G042600"
Ledus.S5	AUGUSTUS	start_codon	4808564	4808566	.	-	0	transcript_id "Ledus.S5G042600.t1"; gene_id "Ledus.S5G042600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4017.t1 is derived from g1453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14094443	14096708	.	-	.	Ledus.S1G143800
Ledus.S1	AUGUSTUS	transcript	14094443	14096708	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	stop_codon	14094440	14094442	.	-	0	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14094443	14094547	0.92	-	0	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14094443	14094547	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	intron	14094548	14094629	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14094630	14094719	1	-	0	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14094630	14094719	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	intron	14094720	14094797	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14094798	14094863	1	-	0	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14094798	14094863	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	intron	14094864	14094949	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14094950	14094992	1	-	1	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14094950	14094992	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	intron	14094993	14095120	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14095121	14095281	1	-	0	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14095121	14095281	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	intron	14095282	14095376	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14095377	14095467	1	-	1	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14095377	14095467	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	intron	14095468	14095580	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14095581	14095654	1	-	0	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14095581	14095654	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	intron	14095655	14095795	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14095796	14095878	1	-	2	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14095796	14095878	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	intron	14095879	14095971	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14095972	14096049	1	-	2	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14095972	14096049	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	intron	14096050	14096133	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14096134	14096209	1	-	0	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14096134	14096209	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	intron	14096210	14096301	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14096302	14096367	1	-	0	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14096302	14096367	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	intron	14096368	14096442	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14096443	14096508	1	-	0	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14096443	14096508	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	intron	14096509	14096606	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	CDS	14096607	14096708	0.57	-	0	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	exon	14096607	14096708	.	-	.	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
Ledus.S1	AUGUSTUS	start_codon	14096706	14096708	.	-	0	transcript_id "Ledus.S1G143800.t1"; gene_id "Ledus.S1G143800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7673.t1 is derived from g12344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5123210	5125190	.	-	.	Ledus.S5G045100
Ledus.S5	AUGUSTUS	transcript	5123210	5125190	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	stop_codon	5123207	5123209	.	-	0	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5123210	5123458	1	-	0	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5123210	5123458	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	intron	5123459	5123552	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5123553	5124054	0.4	-	1	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5123553	5124054	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	intron	5124055	5124256	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5124257	5124346	0.43	-	1	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5124257	5124346	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	intron	5124347	5124440	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5124441	5124454	0.77	-	0	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5124441	5124454	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	intron	5124455	5124540	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5124541	5124614	0.39	-	2	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5124541	5124614	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	intron	5124615	5124694	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5124695	5124760	0.99	-	2	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5124695	5124760	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	intron	5124761	5124916	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5124917	5125190	0.48	-	0	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5124917	5125190	.	-	.	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	start_codon	5125188	5125190	.	-	0	transcript_id "Ledus.S5G045100.t1"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	transcript	5123210	5125190	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	stop_codon	5123207	5123209	.	-	0	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5123210	5123458	1	-	0	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5123210	5123458	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	intron	5123459	5123552	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5123553	5124054	0.38	-	1	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5123553	5124054	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	intron	5124055	5124256	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5124257	5124346	0.4	-	1	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5124257	5124346	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	intron	5124347	5124440	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5124441	5124454	0.64	-	0	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5124441	5124454	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	intron	5124455	5124540	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5124541	5124614	0.36	-	2	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5124541	5124614	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	intron	5124615	5124694	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5124695	5124763	1	-	2	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5124695	5124763	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	intron	5124764	5124916	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	CDS	5124917	5125190	0.48	-	0	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	exon	5124917	5125190	.	-	.	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
Ledus.S5	AUGUSTUS	start_codon	5125188	5125190	.	-	0	transcript_id "Ledus.S5G045100.t2"; gene_id "Ledus.S5G045100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg612.t1 is derived from g7473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3642146	3644614	.	+	.	Ledus.S2G049400
Ledus.S2	AUGUSTUS	transcript	3642146	3644614	.	+	.	transcript_id "Ledus.S2G049400.t1"; gene_id "Ledus.S2G049400"
Ledus.S2	AUGUSTUS	start_codon	3642146	3642148	.	+	0	transcript_id "Ledus.S2G049400.t1"; gene_id "Ledus.S2G049400"
Ledus.S2	AUGUSTUS	CDS	3642146	3643663	0.31	+	0	transcript_id "Ledus.S2G049400.t1"; gene_id "Ledus.S2G049400"
Ledus.S2	AUGUSTUS	exon	3642146	3643663	.	+	.	transcript_id "Ledus.S2G049400.t1"; gene_id "Ledus.S2G049400"
Ledus.S2	AUGUSTUS	intron	3643664	3643786	.	+	.	transcript_id "Ledus.S2G049400.t1"; gene_id "Ledus.S2G049400"
Ledus.S2	AUGUSTUS	CDS	3643787	3644246	0.84	+	0	transcript_id "Ledus.S2G049400.t1"; gene_id "Ledus.S2G049400"
Ledus.S2	AUGUSTUS	exon	3643787	3644246	.	+	.	transcript_id "Ledus.S2G049400.t1"; gene_id "Ledus.S2G049400"
Ledus.S2	AUGUSTUS	intron	3644247	3644426	.	+	.	transcript_id "Ledus.S2G049400.t1"; gene_id "Ledus.S2G049400"
Ledus.S2	AUGUSTUS	CDS	3644427	3644614	0.84	+	2	transcript_id "Ledus.S2G049400.t1"; gene_id "Ledus.S2G049400"
Ledus.S2	AUGUSTUS	exon	3644427	3644614	.	+	.	transcript_id "Ledus.S2G049400.t1"; gene_id "Ledus.S2G049400"
Ledus.S2	AUGUSTUS	stop_codon	3644615	3644617	.	+	0	transcript_id "Ledus.S2G049400.t1"; gene_id "Ledus.S2G049400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7735.t1 is derived from g12406.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5709686	5714687	.	-	.	Ledus.S5G051300
Ledus.S5	AUGUSTUS	transcript	5709686	5714687	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	stop_codon	5709683	5709685	.	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5709686	5709715	0.97	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5709686	5709715	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5709716	5709879	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5709880	5709990	1	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5709880	5709990	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5709991	5710069	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5710070	5710393	1	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5710070	5710393	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5710394	5710477	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5710478	5710630	1	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5710478	5710630	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5710631	5710704	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5710705	5710785	1	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5710705	5710785	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5710786	5710880	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5710881	5710997	1	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5710881	5710997	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5710998	5711105	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5711106	5711258	1	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5711106	5711258	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5711259	5711365	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5711366	5711509	0.97	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5711366	5711509	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5711510	5711629	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5711630	5712005	0.96	-	1	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5711630	5712005	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712006	5712108	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5712109	5712276	0.93	-	1	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5712109	5712276	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712277	5712465	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5712466	5712482	0.9	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5712466	5712482	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712483	5712673	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5712674	5712713	0.47	-	1	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5712674	5712713	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712714	5712816	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5712817	5712873	0.52	-	1	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5712817	5712873	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712874	5713030	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5713031	5713260	1	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5713031	5713260	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5713261	5713603	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5713604	5713701	1	-	2	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5713604	5713701	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5713702	5713944	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5713945	5714079	0.98	-	2	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5713945	5714079	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5714080	5714158	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5714159	5714200	0.97	-	2	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5714159	5714200	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5714201	5714632	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5714633	5714687	0.93	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5714633	5714687	.	-	.	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	start_codon	5714685	5714687	.	-	0	transcript_id "Ledus.S5G051300.t1"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	transcript	5709686	5714687	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	stop_codon	5709683	5709685	.	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5709686	5709712	0.99	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5709686	5709712	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5709713	5709879	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5709880	5709990	1	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5709880	5709990	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5709991	5710069	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5710070	5710393	1	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5710070	5710393	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5710394	5710477	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5710478	5710630	1	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5710478	5710630	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5710631	5710704	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5710705	5710785	1	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5710705	5710785	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5710786	5710880	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5710881	5710997	1	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5710881	5710997	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5710998	5711105	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5711106	5711258	0.98	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5711106	5711258	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5711259	5711365	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5711366	5711509	0.98	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5711366	5711509	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5711510	5711629	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5711630	5712005	0.91	-	1	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5711630	5712005	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712006	5712108	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5712109	5712276	0.93	-	1	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5712109	5712276	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712277	5712465	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5712466	5712482	0.92	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5712466	5712482	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712483	5712673	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5712674	5712713	0.45	-	1	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5712674	5712713	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712714	5712816	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5712817	5712873	0.57	-	1	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5712817	5712873	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712874	5713030	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5713031	5713260	1	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5713031	5713260	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5713261	5713603	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5713604	5713701	1	-	2	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5713604	5713701	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5713702	5713944	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5713945	5714079	0.95	-	2	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5713945	5714079	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5714080	5714158	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5714159	5714200	0.94	-	2	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5714159	5714200	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5714201	5714632	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5714633	5714687	0.91	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5714633	5714687	.	-	.	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	start_codon	5714685	5714687	.	-	0	transcript_id "Ledus.S5G051300.t2"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	transcript	5709686	5714687	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	stop_codon	5709683	5709685	.	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5709686	5709715	0.97	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5709686	5709715	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5709716	5709879	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5709880	5709990	1	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5709880	5709990	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5709991	5710069	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5710070	5710393	1	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5710070	5710393	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5710394	5710477	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5710478	5710630	1	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5710478	5710630	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5710631	5710704	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5710705	5710785	1	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5710705	5710785	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5710786	5710880	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5710881	5710997	1	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5710881	5710997	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5710998	5711105	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5711106	5711258	0.99	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5711106	5711258	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5711259	5711365	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5711366	5711509	0.98	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5711366	5711509	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5711510	5711629	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5711630	5712005	0.95	-	1	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5711630	5712005	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712006	5712108	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5712109	5712276	0.91	-	1	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5712109	5712276	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712277	5712465	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5712466	5712482	0.88	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5712466	5712482	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712483	5712673	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5712674	5712713	0.43	-	1	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5712674	5712713	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712714	5712816	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5712817	5712873	0.53	-	1	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5712817	5712873	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5712874	5713030	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5713031	5713260	1	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5713031	5713260	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5713261	5713415	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5713416	5713437	0.96	-	1	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5713416	5713437	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5713438	5713592	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5713593	5713701	0.95	-	2	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5713593	5713701	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5713702	5713944	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5713945	5714079	0.96	-	2	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5713945	5714079	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5714080	5714158	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5714159	5714200	0.96	-	2	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5714159	5714200	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	intron	5714201	5714632	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	CDS	5714633	5714687	0.93	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	exon	5714633	5714687	.	-	.	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
Ledus.S5	AUGUSTUS	start_codon	5714685	5714687	.	-	0	transcript_id "Ledus.S5G051300.t3"; gene_id "Ledus.S5G051300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12536.t1 is derived from g6158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12790873	12792645	.	-	.	Ledus.S4G169200
Ledus.S4	AUGUSTUS	transcript	12790873	12792645	.	-	.	transcript_id "Ledus.S4G169200.t1"; gene_id "Ledus.S4G169200"
Ledus.S4	AUGUSTUS	stop_codon	12790870	12790872	.	-	0	transcript_id "Ledus.S4G169200.t1"; gene_id "Ledus.S4G169200"
Ledus.S4	AUGUSTUS	CDS	12790873	12792645	0.92	-	0	transcript_id "Ledus.S4G169200.t1"; gene_id "Ledus.S4G169200"
Ledus.S4	AUGUSTUS	exon	12790873	12792645	.	-	.	transcript_id "Ledus.S4G169200.t1"; gene_id "Ledus.S4G169200"
Ledus.S4	AUGUSTUS	start_codon	12792643	12792645	.	-	0	transcript_id "Ledus.S4G169200.t1"; gene_id "Ledus.S4G169200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11399.t1 is derived from g5017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4006230	4006589	.	+	.	Ledus.S4G055500
Ledus.S4	AUGUSTUS	transcript	4006230	4006589	.	+	.	transcript_id "Ledus.S4G055500.t1"; gene_id "Ledus.S4G055500"
Ledus.S4	AUGUSTUS	start_codon	4006230	4006232	.	+	0	transcript_id "Ledus.S4G055500.t1"; gene_id "Ledus.S4G055500"
Ledus.S4	AUGUSTUS	CDS	4006230	4006589	0.51	+	0	transcript_id "Ledus.S4G055500.t1"; gene_id "Ledus.S4G055500"
Ledus.S4	AUGUSTUS	exon	4006230	4006589	.	+	.	transcript_id "Ledus.S4G055500.t1"; gene_id "Ledus.S4G055500"
Ledus.S4	AUGUSTUS	stop_codon	4006590	4006592	.	+	0	transcript_id "Ledus.S4G055500.t1"; gene_id "Ledus.S4G055500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12724.t1 is derived from g6346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14084984	14085948	.	+	.	Ledus.S4G188000
Ledus.S4	AUGUSTUS	transcript	14084984	14085948	.	+	.	transcript_id "Ledus.S4G188000.t1"; gene_id "Ledus.S4G188000"
Ledus.S4	AUGUSTUS	start_codon	14084984	14084986	.	+	0	transcript_id "Ledus.S4G188000.t1"; gene_id "Ledus.S4G188000"
Ledus.S4	AUGUSTUS	CDS	14084984	14085206	1	+	0	transcript_id "Ledus.S4G188000.t1"; gene_id "Ledus.S4G188000"
Ledus.S4	AUGUSTUS	exon	14084984	14085206	.	+	.	transcript_id "Ledus.S4G188000.t1"; gene_id "Ledus.S4G188000"
Ledus.S4	AUGUSTUS	intron	14085207	14085760	.	+	.	transcript_id "Ledus.S4G188000.t1"; gene_id "Ledus.S4G188000"
Ledus.S4	AUGUSTUS	CDS	14085761	14085948	0.93	+	2	transcript_id "Ledus.S4G188000.t1"; gene_id "Ledus.S4G188000"
Ledus.S4	AUGUSTUS	exon	14085761	14085948	.	+	.	transcript_id "Ledus.S4G188000.t1"; gene_id "Ledus.S4G188000"
Ledus.S4	AUGUSTUS	stop_codon	14085949	14085951	.	+	0	transcript_id "Ledus.S4G188000.t1"; gene_id "Ledus.S4G188000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8624.t1 is derived from g9654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	757401	761397	.	+	.	Ledus.S3G010100
Ledus.S3	AUGUSTUS	transcript	757401	761397	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	start_codon	757401	757403	.	+	0	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	757401	758001	0.81	+	0	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	757401	758001	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	758002	758143	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	758144	758501	1	+	2	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	758144	758501	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	758502	758711	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	758712	758769	0.6	+	1	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	758712	758769	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	758770	758910	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	758911	759035	0.89	+	0	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	758911	759035	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	759036	759161	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	759162	759243	0.96	+	1	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	759162	759243	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	759244	759362	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	759363	759536	0.98	+	0	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	759363	759536	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	759537	759667	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	759668	759749	1	+	0	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	759668	759749	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	759750	759900	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	759901	759992	1	+	2	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	759901	759992	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	759993	760116	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	760117	760179	1	+	0	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	760117	760179	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	760180	760312	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	760313	760402	1	+	0	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	760313	760402	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	760403	760528	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	760529	760653	1	+	0	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	760529	760653	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	760654	760747	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	760748	760856	1	+	1	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	760748	760856	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	760857	760944	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	760945	761000	1	+	0	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	760945	761000	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	761001	761100	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	761101	761140	0.95	+	1	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	761101	761140	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	intron	761141	761244	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	CDS	761245	761397	0.59	+	0	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	exon	761245	761397	.	+	.	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
Ledus.S3	AUGUSTUS	stop_codon	761398	761400	.	+	0	transcript_id "Ledus.S3G010100.t1"; gene_id "Ledus.S3G010100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10724.t1 is derived from g11754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17373913	17379603	.	-	.	Ledus.S3G220100
Ledus.S3	AUGUSTUS	transcript	17373913	17379603	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	stop_codon	17373910	17373912	.	-	0	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17373913	17374252	1	-	1	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17373913	17374252	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17374253	17374334	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17374335	17374433	1	-	1	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17374335	17374433	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17374434	17374567	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17374568	17374669	1	-	1	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17374568	17374669	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17374670	17375027	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17375028	17375129	1	-	1	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17375028	17375129	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17375130	17375208	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17375209	17375310	1	-	1	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17375209	17375310	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17375311	17375397	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17375398	17375454	1	-	1	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17375398	17375454	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17375455	17375534	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17375535	17375648	1	-	1	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17375535	17375648	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17375649	17375739	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17375740	17375841	1	-	1	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17375740	17375841	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17375842	17375926	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17375927	17376028	1	-	1	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17375927	17376028	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17376029	17376104	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17376105	17376206	1	-	1	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17376105	17376206	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17376207	17376304	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17376305	17376675	1	-	0	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17376305	17376675	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17376676	17376754	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17376755	17377480	1	-	0	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17376755	17377480	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17377481	17377564	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17377565	17377824	1	-	2	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17377565	17377824	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17377825	17377917	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17377918	17378121	1	-	2	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17377918	17378121	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17378122	17378233	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17378234	17378417	0.49	-	0	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17378234	17378417	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17378418	17378528	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17378529	17378684	0.95	-	0	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17378529	17378684	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17378685	17378769	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17378770	17379183	0.97	-	0	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17378770	17379183	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	intron	17379184	17379273	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	CDS	17379274	17379603	1	-	0	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	exon	17379274	17379603	.	-	.	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
Ledus.S3	AUGUSTUS	start_codon	17379601	17379603	.	-	0	transcript_id "Ledus.S3G220100.t1"; gene_id "Ledus.S3G220100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg11275.t1 is derived from g4893.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3173423	3176271	.	+	.	Ledus.S4G043100
Ledus.S4	AUGUSTUS	transcript	3173423	3176271	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	start_codon	3173423	3173425	.	+	0	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3173423	3173707	0.98	+	0	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3173423	3173707	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3173708	3174170	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3174171	3174217	1	+	0	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3174171	3174217	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3174218	3174732	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3174733	3174758	0.97	+	1	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3174733	3174758	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3174759	3174926	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3174927	3174966	0.99	+	2	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3174927	3174966	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3174967	3175647	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3175648	3175653	0.91	+	1	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3175648	3175653	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3175654	3175750	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3175751	3175823	0.91	+	1	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3175751	3175823	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3175824	3176208	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3176209	3176271	0.82	+	0	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3176209	3176271	.	+	.	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	stop_codon	3176272	3176274	.	+	0	transcript_id "Ledus.S4G043100.t1"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	transcript	3173423	3176271	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	start_codon	3173423	3173425	.	+	0	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3173423	3173807	0.92	+	0	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3173423	3173807	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3173808	3174596	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3174597	3174613	1	+	2	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3174597	3174613	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3174614	3174732	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3174733	3174758	0.95	+	0	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3174733	3174758	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3174759	3174915	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3174916	3174966	0.94	+	1	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3174916	3174966	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3174967	3175647	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3175648	3175653	0.86	+	1	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3175648	3175653	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3175654	3175750	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3175751	3175823	0.86	+	1	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3175751	3175823	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3175824	3176208	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3176209	3176271	0.75	+	0	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3176209	3176271	.	+	.	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	stop_codon	3176272	3176274	.	+	0	transcript_id "Ledus.S4G043100.t2"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	transcript	3173423	3176271	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	start_codon	3173423	3173425	.	+	0	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3173423	3173707	0.51	+	0	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3173423	3173707	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3173708	3173774	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3173775	3173807	0.58	+	0	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3173775	3173807	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3173808	3174596	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3174597	3174613	0.58	+	0	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3174597	3174613	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3174614	3174732	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3174733	3174758	0.59	+	1	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3174733	3174758	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3174759	3174926	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3174927	3174966	0.64	+	2	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3174927	3174966	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3174967	3175647	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3175648	3175653	0.69	+	1	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3175648	3175653	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3175654	3175750	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3175751	3175823	0.69	+	1	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3175751	3175823	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3175824	3176208	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3176209	3176271	0.65	+	0	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3176209	3176271	.	+	.	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	stop_codon	3176272	3176274	.	+	0	transcript_id "Ledus.S4G043100.t3"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	transcript	3173423	3176271	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	start_codon	3173423	3173425	.	+	0	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3173423	3173707	0.83	+	0	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3173423	3173707	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3173708	3174170	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3174171	3174217	0.44	+	0	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3174171	3174217	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3174218	3174732	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3174733	3174758	0.85	+	1	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3174733	3174758	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3174759	3174926	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3174927	3174966	0.82	+	2	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3174927	3174966	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3174967	3175647	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3175648	3175653	0.51	+	1	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3175648	3175653	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3175654	3175750	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3175751	3175823	0.51	+	1	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3175751	3175823	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	intron	3175824	3176214	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	CDS	3176215	3176271	0.51	+	0	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	exon	3176215	3176271	.	+	.	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
Ledus.S4	AUGUSTUS	stop_codon	3176272	3176274	.	+	0	transcript_id "Ledus.S4G043100.t4"; gene_id "Ledus.S4G043100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7200.t1 is derived from g6731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2088344	2091870	.	-	.	Ledus.C7G026100
Ledus.C7	AUGUSTUS	transcript	2088344	2091870	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	stop_codon	2088341	2088343	.	-	0	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2088344	2088595	0.98	-	0	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2088344	2088595	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2088596	2088680	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2088681	2088770	1	-	0	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2088681	2088770	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2088771	2088874	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2088875	2088960	1	-	2	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2088875	2088960	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2088961	2089048	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2089049	2089188	0.88	-	1	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2089049	2089188	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2089189	2089302	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2089303	2089427	1	-	0	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2089303	2089427	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2089428	2089525	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2089526	2089584	1	-	2	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2089526	2089584	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2089585	2089681	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2089682	2089787	1	-	0	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2089682	2089787	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2089788	2089951	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2089952	2090018	1	-	1	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2089952	2090018	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2090019	2090183	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2090184	2090297	1	-	1	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2090184	2090297	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2090298	2090440	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2090441	2090519	1	-	2	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2090441	2090519	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2090520	2090635	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2090636	2090806	0.86	-	2	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2090636	2090806	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2090807	2090908	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2090909	2091041	0.86	-	0	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2090909	2091041	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2091042	2091132	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2091133	2091298	1	-	1	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2091133	2091298	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	intron	2091299	2091658	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	CDS	2091659	2091870	0.71	-	0	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	exon	2091659	2091870	.	-	.	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
Ledus.C7	AUGUSTUS	start_codon	2091868	2091870	.	-	0	transcript_id "Ledus.C7G026100.t1"; gene_id "Ledus.C7G026100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9219.t1 is derived from g10249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5459234	5462506	.	+	.	Ledus.S3G069600
Ledus.S3	AUGUSTUS	transcript	5459234	5462506	.	+	.	transcript_id "Ledus.S3G069600.t1"; gene_id "Ledus.S3G069600"
Ledus.S3	AUGUSTUS	start_codon	5459234	5459236	.	+	0	transcript_id "Ledus.S3G069600.t1"; gene_id "Ledus.S3G069600"
Ledus.S3	AUGUSTUS	CDS	5459234	5459388	0.43	+	0	transcript_id "Ledus.S3G069600.t1"; gene_id "Ledus.S3G069600"
Ledus.S3	AUGUSTUS	exon	5459234	5459388	.	+	.	transcript_id "Ledus.S3G069600.t1"; gene_id "Ledus.S3G069600"
Ledus.S3	AUGUSTUS	intron	5459389	5459508	.	+	.	transcript_id "Ledus.S3G069600.t1"; gene_id "Ledus.S3G069600"
Ledus.S3	AUGUSTUS	CDS	5459509	5461571	0.65	+	1	transcript_id "Ledus.S3G069600.t1"; gene_id "Ledus.S3G069600"
Ledus.S3	AUGUSTUS	exon	5459509	5461571	.	+	.	transcript_id "Ledus.S3G069600.t1"; gene_id "Ledus.S3G069600"
Ledus.S3	AUGUSTUS	intron	5461572	5461715	.	+	.	transcript_id "Ledus.S3G069600.t1"; gene_id "Ledus.S3G069600"
Ledus.S3	AUGUSTUS	CDS	5461716	5462506	0.97	+	2	transcript_id "Ledus.S3G069600.t1"; gene_id "Ledus.S3G069600"
Ledus.S3	AUGUSTUS	exon	5461716	5462506	.	+	.	transcript_id "Ledus.S3G069600.t1"; gene_id "Ledus.S3G069600"
Ledus.S3	AUGUSTUS	stop_codon	5462507	5462509	.	+	0	transcript_id "Ledus.S3G069600.t1"; gene_id "Ledus.S3G069600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8805.t1 is derived from g9835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2051016	2052896	.	+	.	Ledus.S3G028200
Ledus.S3	AUGUSTUS	transcript	2051016	2052896	.	+	.	transcript_id "Ledus.S3G028200.t1"; gene_id "Ledus.S3G028200"
Ledus.S3	AUGUSTUS	start_codon	2051016	2051018	.	+	0	transcript_id "Ledus.S3G028200.t1"; gene_id "Ledus.S3G028200"
Ledus.S3	AUGUSTUS	CDS	2051016	2052896	0.51	+	0	transcript_id "Ledus.S3G028200.t1"; gene_id "Ledus.S3G028200"
Ledus.S3	AUGUSTUS	exon	2051016	2052896	.	+	.	transcript_id "Ledus.S3G028200.t1"; gene_id "Ledus.S3G028200"
Ledus.S3	AUGUSTUS	stop_codon	2052897	2052899	.	+	0	transcript_id "Ledus.S3G028200.t1"; gene_id "Ledus.S3G028200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7212.t1 is derived from g6743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2228108	2232179	.	-	.	Ledus.C7G027300
Ledus.C7	AUGUSTUS	transcript	2228108	2232179	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	stop_codon	2228105	2228107	.	-	0	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	CDS	2228108	2228319	0.87	-	2	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	exon	2228108	2228319	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	intron	2228320	2228460	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	CDS	2228461	2228545	1	-	0	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	exon	2228461	2228545	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	intron	2228546	2228777	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	CDS	2228778	2228825	1	-	0	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	exon	2228778	2228825	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	intron	2228826	2228951	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	CDS	2228952	2229065	1	-	0	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	exon	2228952	2229065	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	intron	2229066	2229168	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	CDS	2229169	2229300	1	-	0	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	exon	2229169	2229300	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	intron	2229301	2229531	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	CDS	2229532	2229616	1	-	1	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	exon	2229532	2229616	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	intron	2229617	2229718	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	CDS	2229719	2229798	1	-	0	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	exon	2229719	2229798	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	intron	2229799	2230127	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	CDS	2230128	2230368	1	-	1	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	exon	2230128	2230368	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	intron	2230369	2230493	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	CDS	2230494	2230735	0.99	-	0	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	exon	2230494	2230735	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	intron	2230736	2231227	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	CDS	2231228	2231311	1	-	0	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	exon	2231228	2231311	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	intron	2231312	2231394	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	CDS	2231395	2231569	1	-	1	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	exon	2231395	2231569	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	intron	2231570	2231904	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	CDS	2231905	2232179	0.99	-	0	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	exon	2231905	2232179	.	-	.	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
Ledus.C7	AUGUSTUS	start_codon	2232177	2232179	.	-	0	transcript_id "Ledus.C7G027300.t1"; gene_id "Ledus.C7G027300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11517.t1 is derived from g5135.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5018102	5018632	.	+	.	Ledus.S4G067300
Ledus.S4	AUGUSTUS	transcript	5018102	5018632	.	+	.	transcript_id "Ledus.S4G067300.t1"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	start_codon	5018102	5018104	.	+	0	transcript_id "Ledus.S4G067300.t1"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	CDS	5018102	5018104	0.76	+	0	transcript_id "Ledus.S4G067300.t1"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	exon	5018102	5018104	.	+	.	transcript_id "Ledus.S4G067300.t1"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	intron	5018105	5018293	.	+	.	transcript_id "Ledus.S4G067300.t1"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	CDS	5018294	5018413	0.99	+	0	transcript_id "Ledus.S4G067300.t1"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	exon	5018294	5018413	.	+	.	transcript_id "Ledus.S4G067300.t1"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	intron	5018414	5018515	.	+	.	transcript_id "Ledus.S4G067300.t1"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	CDS	5018516	5018632	0.99	+	0	transcript_id "Ledus.S4G067300.t1"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	exon	5018516	5018632	.	+	.	transcript_id "Ledus.S4G067300.t1"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	stop_codon	5018633	5018635	.	+	0	transcript_id "Ledus.S4G067300.t1"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	transcript	5018102	5018632	.	+	.	transcript_id "Ledus.S4G067300.t2"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	start_codon	5018102	5018104	.	+	0	transcript_id "Ledus.S4G067300.t2"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	CDS	5018102	5018104	0.72	+	0	transcript_id "Ledus.S4G067300.t2"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	exon	5018102	5018104	.	+	.	transcript_id "Ledus.S4G067300.t2"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	intron	5018105	5018254	.	+	.	transcript_id "Ledus.S4G067300.t2"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	CDS	5018255	5018413	0.97	+	0	transcript_id "Ledus.S4G067300.t2"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	exon	5018255	5018413	.	+	.	transcript_id "Ledus.S4G067300.t2"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	intron	5018414	5018515	.	+	.	transcript_id "Ledus.S4G067300.t2"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	CDS	5018516	5018632	0.97	+	0	transcript_id "Ledus.S4G067300.t2"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	exon	5018516	5018632	.	+	.	transcript_id "Ledus.S4G067300.t2"; gene_id "Ledus.S4G067300"
Ledus.S4	AUGUSTUS	stop_codon	5018633	5018635	.	+	0	transcript_id "Ledus.S4G067300.t2"; gene_id "Ledus.S4G067300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5642.t1 is derived from g3081.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25550855	25552170	.	+	.	Ledus.S1G306300
Ledus.S1	AUGUSTUS	transcript	25550855	25552170	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	start_codon	25550855	25550857	.	+	0	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	CDS	25550855	25550892	0.98	+	0	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	exon	25550855	25550892	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	intron	25550893	25551003	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	CDS	25551004	25551067	1	+	1	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	exon	25551004	25551067	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	intron	25551068	25551205	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	CDS	25551206	25551343	0.56	+	0	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	exon	25551206	25551343	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	intron	25551344	25551455	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	CDS	25551456	25551692	0.96	+	0	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	exon	25551456	25551692	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	intron	25551693	25551788	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	CDS	25551789	25551822	0.68	+	0	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	exon	25551789	25551822	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	intron	25551823	25551965	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	CDS	25551966	25552069	0.99	+	2	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	exon	25551966	25552069	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	intron	25552070	25552143	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	CDS	25552144	25552170	0.94	+	0	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	exon	25552144	25552170	.	+	.	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
Ledus.S1	AUGUSTUS	stop_codon	25552171	25552173	.	+	0	transcript_id "Ledus.S1G306300.t1"; gene_id "Ledus.S1G306300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg1212.t1 is derived from g8073.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8642258	8649961	.	+	.	Ledus.S2G109400
Ledus.S2	AUGUSTUS	transcript	8642258	8649961	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	start_codon	8642258	8642260	.	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8642258	8642450	1	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8642258	8642450	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8642451	8642621	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8642622	8642629	1	+	2	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8642622	8642629	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8642630	8642904	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8642905	8642980	1	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8642905	8642980	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8642981	8643066	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8643067	8643197	1	+	2	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8643067	8643197	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8643198	8643278	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8643279	8643428	1	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8643279	8643428	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8643429	8643582	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8643583	8643751	0.99	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8643583	8643751	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8643752	8643856	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8643857	8643983	0.99	+	2	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8643857	8643983	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8643984	8644151	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8644152	8644266	1	+	1	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8644152	8644266	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8644267	8644406	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8644407	8644496	1	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8644407	8644496	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8644497	8644587	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8644588	8644695	1	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8644588	8644695	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8644696	8644776	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8644777	8644986	1	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8644777	8644986	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8644987	8645156	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8645157	8645282	0.95	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8645157	8645282	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8645283	8645402	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8645403	8646100	0.94	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8645403	8646100	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8646101	8646207	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8646208	8646353	0.99	+	1	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8646208	8646353	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8646354	8646655	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8646656	8646826	1	+	2	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8646656	8646826	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8646827	8646925	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8646926	8647026	0.7	+	2	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8646926	8647026	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8647027	8647165	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8647166	8647228	0.71	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8647166	8647228	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8647229	8647495	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8647496	8647588	0.97	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8647496	8647588	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8647589	8647933	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8647934	8647977	1	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8647934	8647977	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8647978	8648039	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648040	8648235	1	+	1	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648040	8648235	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8648236	8648300	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648301	8648414	1	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648301	8648414	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8648415	8648497	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648498	8648638	1	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648498	8648638	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8648639	8648731	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648732	8648842	1	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648732	8648842	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8648843	8648919	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648920	8649066	1	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648920	8649066	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8649067	8649175	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8649176	8649216	1	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8649176	8649216	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8649217	8649299	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8649300	8649376	1	+	1	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8649300	8649376	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8649377	8649471	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8649472	8649567	1	+	2	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8649472	8649567	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8649568	8649662	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8649663	8649961	0.88	+	2	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8649663	8649961	.	+	.	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	stop_codon	8649962	8649964	.	+	0	transcript_id "Ledus.S2G109400.t1"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	transcript	8642258	8649961	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	start_codon	8642258	8642260	.	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8642258	8642450	0.98	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8642258	8642450	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8642451	8642621	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8642622	8642629	1	+	2	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8642622	8642629	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8642630	8642904	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8642905	8642980	1	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8642905	8642980	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8642981	8643066	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8643067	8643197	1	+	2	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8643067	8643197	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8643198	8643278	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8643279	8643428	1	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8643279	8643428	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8643429	8643582	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8643583	8643751	1	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8643583	8643751	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8643752	8643856	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8643857	8643983	0.99	+	2	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8643857	8643983	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8643984	8644151	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8644152	8644266	1	+	1	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8644152	8644266	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8644267	8644406	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8644407	8644496	1	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8644407	8644496	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8644497	8644587	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8644588	8644695	1	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8644588	8644695	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8644696	8644776	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8644777	8644986	1	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8644777	8644986	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8644987	8645156	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8645157	8645282	0.92	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8645157	8645282	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8645283	8645402	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8645403	8646100	0.9	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8645403	8646100	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8646101	8646207	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8646208	8646353	0.99	+	1	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8646208	8646353	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8646354	8646655	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8646656	8646826	1	+	2	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8646656	8646826	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8646827	8646925	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8646926	8647026	0.61	+	2	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8646926	8647026	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8647027	8647165	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8647166	8647228	0.63	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8647166	8647228	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8647229	8647495	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8647496	8647588	0.94	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8647496	8647588	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8647589	8647963	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8647964	8647977	1	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8647964	8647977	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8647978	8648039	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648040	8648235	1	+	1	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648040	8648235	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8648236	8648300	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648301	8648414	1	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648301	8648414	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8648415	8648497	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648498	8648638	1	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648498	8648638	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8648639	8648731	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648732	8648842	1	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648732	8648842	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8648843	8648919	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648920	8649066	1	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648920	8649066	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8649067	8649175	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8649176	8649216	1	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8649176	8649216	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8649217	8649299	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8649300	8649376	1	+	1	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8649300	8649376	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8649377	8649471	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8649472	8649567	1	+	2	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8649472	8649567	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8649568	8649662	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8649663	8649961	0.86	+	2	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8649663	8649961	.	+	.	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	stop_codon	8649962	8649964	.	+	0	transcript_id "Ledus.S2G109400.t2"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	transcript	8642258	8649961	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	start_codon	8642258	8642260	.	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8642258	8642450	0.97	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8642258	8642450	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8642451	8642621	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8642622	8642629	1	+	2	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8642622	8642629	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8642630	8642904	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8642905	8642980	1	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8642905	8642980	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8642981	8643066	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8643067	8643197	1	+	2	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8643067	8643197	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8643198	8643278	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8643279	8643428	1	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8643279	8643428	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8643429	8643582	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8643583	8643751	1	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8643583	8643751	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8643752	8643856	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8643857	8643983	0.98	+	2	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8643857	8643983	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8643984	8644151	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8644152	8644266	1	+	1	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8644152	8644266	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8644267	8644406	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8644407	8644496	1	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8644407	8644496	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8644497	8644587	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8644588	8644695	1	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8644588	8644695	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8644696	8644776	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8644777	8644986	1	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8644777	8644986	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8644987	8645156	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8645157	8645282	0.88	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8645157	8645282	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8645283	8645402	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8645403	8646100	0.9	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8645403	8646100	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8646101	8646207	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8646208	8646353	1	+	1	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8646208	8646353	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8646354	8646655	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8646656	8646826	1	+	2	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8646656	8646826	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8646827	8646925	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8646926	8647026	0.54	+	2	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8646926	8647026	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8647027	8647211	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8647212	8647228	0.54	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8647212	8647228	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8647229	8647500	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8647501	8647588	0.74	+	1	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8647501	8647588	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8647589	8647933	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8647934	8647977	0.94	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8647934	8647977	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8647978	8648039	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648040	8648235	0.94	+	1	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648040	8648235	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8648236	8648300	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648301	8648414	1	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648301	8648414	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8648415	8648497	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648498	8648638	1	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648498	8648638	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8648639	8648731	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648732	8648842	1	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648732	8648842	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8648843	8648919	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8648920	8649066	1	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8648920	8649066	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8649067	8649175	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8649176	8649216	1	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8649176	8649216	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8649217	8649299	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8649300	8649376	1	+	1	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8649300	8649376	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8649377	8649471	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8649472	8649567	1	+	2	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8649472	8649567	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	intron	8649568	8649662	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	CDS	8649663	8649961	0.89	+	2	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	exon	8649663	8649961	.	+	.	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
Ledus.S2	AUGUSTUS	stop_codon	8649962	8649964	.	+	0	transcript_id "Ledus.S2G109400.t3"; gene_id "Ledus.S2G109400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3405.t1 is derived from g840.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8105812	8106674	.	-	.	Ledus.S1G082600
Ledus.S1	AUGUSTUS	transcript	8105812	8106674	.	-	.	transcript_id "Ledus.S1G082600.t1"; gene_id "Ledus.S1G082600"
Ledus.S1	AUGUSTUS	stop_codon	8105809	8105811	.	-	0	transcript_id "Ledus.S1G082600.t1"; gene_id "Ledus.S1G082600"
Ledus.S1	AUGUSTUS	CDS	8105812	8106022	1	-	1	transcript_id "Ledus.S1G082600.t1"; gene_id "Ledus.S1G082600"
Ledus.S1	AUGUSTUS	exon	8105812	8106022	.	-	.	transcript_id "Ledus.S1G082600.t1"; gene_id "Ledus.S1G082600"
Ledus.S1	AUGUSTUS	intron	8106023	8106097	.	-	.	transcript_id "Ledus.S1G082600.t1"; gene_id "Ledus.S1G082600"
Ledus.S1	AUGUSTUS	CDS	8106098	8106282	1	-	0	transcript_id "Ledus.S1G082600.t1"; gene_id "Ledus.S1G082600"
Ledus.S1	AUGUSTUS	exon	8106098	8106282	.	-	.	transcript_id "Ledus.S1G082600.t1"; gene_id "Ledus.S1G082600"
Ledus.S1	AUGUSTUS	intron	8106283	8106575	.	-	.	transcript_id "Ledus.S1G082600.t1"; gene_id "Ledus.S1G082600"
Ledus.S1	AUGUSTUS	CDS	8106576	8106674	0.72	-	0	transcript_id "Ledus.S1G082600.t1"; gene_id "Ledus.S1G082600"
Ledus.S1	AUGUSTUS	exon	8106576	8106674	.	-	.	transcript_id "Ledus.S1G082600.t1"; gene_id "Ledus.S1G082600"
Ledus.S1	AUGUSTUS	start_codon	8106672	8106674	.	-	0	transcript_id "Ledus.S1G082600.t1"; gene_id "Ledus.S1G082600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6212.t1 is derived from g3655.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29682725	29682961	.	-	.	Ledus.S1G363300
Ledus.S1	AUGUSTUS	transcript	29682725	29682961	.	-	.	transcript_id "Ledus.S1G363300.t1"; gene_id "Ledus.S1G363300"
Ledus.S1	AUGUSTUS	stop_codon	29682722	29682724	.	-	0	transcript_id "Ledus.S1G363300.t1"; gene_id "Ledus.S1G363300"
Ledus.S1	AUGUSTUS	CDS	29682725	29682961	0.69	-	0	transcript_id "Ledus.S1G363300.t1"; gene_id "Ledus.S1G363300"
Ledus.S1	AUGUSTUS	exon	29682725	29682961	.	-	.	transcript_id "Ledus.S1G363300.t1"; gene_id "Ledus.S1G363300"
Ledus.S1	AUGUSTUS	start_codon	29682959	29682961	.	-	0	transcript_id "Ledus.S1G363300.t1"; gene_id "Ledus.S1G363300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4305.t1 is derived from g1741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16125671	16127263	.	-	.	Ledus.S1G172600
Ledus.S1	AUGUSTUS	transcript	16125671	16127263	.	-	.	transcript_id "Ledus.S1G172600.t1"; gene_id "Ledus.S1G172600"
Ledus.S1	AUGUSTUS	stop_codon	16125668	16125670	.	-	0	transcript_id "Ledus.S1G172600.t1"; gene_id "Ledus.S1G172600"
Ledus.S1	AUGUSTUS	CDS	16125671	16127263	0.99	-	0	transcript_id "Ledus.S1G172600.t1"; gene_id "Ledus.S1G172600"
Ledus.S1	AUGUSTUS	exon	16125671	16127263	.	-	.	transcript_id "Ledus.S1G172600.t1"; gene_id "Ledus.S1G172600"
Ledus.S1	AUGUSTUS	start_codon	16127261	16127263	.	-	0	transcript_id "Ledus.S1G172600.t1"; gene_id "Ledus.S1G172600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2957.t1 is derived from g392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4910043	4912097	.	-	.	Ledus.S1G037800
Ledus.S1	AUGUSTUS	transcript	4910043	4912097	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	stop_codon	4910040	4910042	.	-	0	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	CDS	4910043	4910114	1	-	0	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	exon	4910043	4910114	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	intron	4910115	4910201	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	CDS	4910202	4910280	1	-	1	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	exon	4910202	4910280	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	intron	4910281	4910368	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	CDS	4910369	4910527	1	-	1	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	exon	4910369	4910527	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	intron	4910528	4910653	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	CDS	4910654	4911245	0.9	-	2	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	exon	4910654	4911245	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	intron	4911246	4911381	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	CDS	4911382	4911541	1	-	0	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	exon	4911382	4911541	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	intron	4911542	4911661	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	CDS	4911662	4911769	1	-	0	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	exon	4911662	4911769	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	intron	4911770	4911866	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	CDS	4911867	4912097	0.41	-	0	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	exon	4911867	4912097	.	-	.	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
Ledus.S1	AUGUSTUS	start_codon	4912095	4912097	.	-	0	transcript_id "Ledus.S1G037800.t1"; gene_id "Ledus.S1G037800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6691.t1 is derived from g4134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33286522	33287528	.	-	.	Ledus.S1G411200
Ledus.S1	AUGUSTUS	transcript	33286522	33287528	.	-	.	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	stop_codon	33286519	33286521	.	-	0	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	CDS	33286522	33286779	0.99	-	0	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	exon	33286522	33286779	.	-	.	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	intron	33286780	33286871	.	-	.	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	CDS	33286872	33286998	1	-	1	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	exon	33286872	33286998	.	-	.	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	intron	33286999	33287081	.	-	.	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	CDS	33287082	33287152	1	-	0	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	exon	33287082	33287152	.	-	.	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	intron	33287153	33287229	.	-	.	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	CDS	33287230	33287282	1	-	2	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	exon	33287230	33287282	.	-	.	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	intron	33287283	33287467	.	-	.	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	CDS	33287468	33287528	0.96	-	0	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	exon	33287468	33287528	.	-	.	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
Ledus.S1	AUGUSTUS	start_codon	33287526	33287528	.	-	0	transcript_id "Ledus.S1G411200.t1"; gene_id "Ledus.S1G411200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11195.t1 is derived from g4813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2614143	2614819	.	-	.	Ledus.S4G035100
Ledus.S4	AUGUSTUS	transcript	2614143	2614819	.	-	.	transcript_id "Ledus.S4G035100.t1"; gene_id "Ledus.S4G035100"
Ledus.S4	AUGUSTUS	stop_codon	2614140	2614142	.	-	0	transcript_id "Ledus.S4G035100.t1"; gene_id "Ledus.S4G035100"
Ledus.S4	AUGUSTUS	CDS	2614143	2614480	0.92	-	2	transcript_id "Ledus.S4G035100.t1"; gene_id "Ledus.S4G035100"
Ledus.S4	AUGUSTUS	exon	2614143	2614480	.	-	.	transcript_id "Ledus.S4G035100.t1"; gene_id "Ledus.S4G035100"
Ledus.S4	AUGUSTUS	intron	2614481	2614560	.	-	.	transcript_id "Ledus.S4G035100.t1"; gene_id "Ledus.S4G035100"
Ledus.S4	AUGUSTUS	CDS	2614561	2614819	0.83	-	0	transcript_id "Ledus.S4G035100.t1"; gene_id "Ledus.S4G035100"
Ledus.S4	AUGUSTUS	exon	2614561	2614819	.	-	.	transcript_id "Ledus.S4G035100.t1"; gene_id "Ledus.S4G035100"
Ledus.S4	AUGUSTUS	start_codon	2614817	2614819	.	-	0	transcript_id "Ledus.S4G035100.t1"; gene_id "Ledus.S4G035100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9888.t1 is derived from g10918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10974640	10975939	.	-	.	Ledus.S3G136500
Ledus.S3	AUGUSTUS	transcript	10974640	10975939	.	-	.	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	stop_codon	10974637	10974639	.	-	0	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	CDS	10974640	10974872	0.99	-	2	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	exon	10974640	10974872	.	-	.	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	intron	10974873	10974949	.	-	.	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	CDS	10974950	10975103	1	-	0	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	exon	10974950	10975103	.	-	.	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	intron	10975104	10975231	.	-	.	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	CDS	10975232	10975314	1	-	2	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	exon	10975232	10975314	.	-	.	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	intron	10975315	10975393	.	-	.	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	CDS	10975394	10975487	1	-	0	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	exon	10975394	10975487	.	-	.	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	intron	10975488	10975577	.	-	.	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	CDS	10975578	10975730	1	-	0	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	exon	10975578	10975730	.	-	.	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	intron	10975731	10975807	.	-	.	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	CDS	10975808	10975939	0.96	-	0	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	exon	10975808	10975939	.	-	.	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
Ledus.S3	AUGUSTUS	start_codon	10975937	10975939	.	-	0	transcript_id "Ledus.S3G136500.t1"; gene_id "Ledus.S3G136500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4653.t1 is derived from g2091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18717793	18719763	.	-	.	Ledus.S1G207400
Ledus.S1	AUGUSTUS	transcript	18717793	18719763	.	-	.	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	stop_codon	18717790	18717792	.	-	0	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18717793	18717894	0.86	-	0	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18717793	18717894	.	-	.	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	intron	18717895	18717983	.	-	.	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18717984	18718061	1	-	0	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18717984	18718061	.	-	.	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	intron	18718062	18718219	.	-	.	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18718220	18718305	1	-	2	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18718220	18718305	.	-	.	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	intron	18718306	18718424	.	-	.	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18718425	18718572	1	-	0	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18718425	18718572	.	-	.	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	intron	18718573	18718658	.	-	.	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18718659	18718940	1	-	0	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18718659	18718940	.	-	.	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	intron	18718941	18719376	.	-	.	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18719377	18719763	1	-	0	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18719377	18719763	.	-	.	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	start_codon	18719761	18719763	.	-	0	transcript_id "Ledus.S1G207400.t1"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	transcript	18717793	18719763	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	stop_codon	18717790	18717792	.	-	0	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18717793	18717894	0.88	-	0	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18717793	18717894	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	intron	18717895	18717983	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18717984	18718061	1	-	0	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18717984	18718061	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	intron	18718062	18718219	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18718220	18718305	1	-	2	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18718220	18718305	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	intron	18718306	18718424	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18718425	18718572	1	-	0	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18718425	18718572	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	intron	18718573	18718658	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18718659	18718873	0.72	-	2	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18718659	18718873	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	intron	18718874	18718932	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18718933	18718940	0.76	-	1	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18718933	18718940	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	intron	18718941	18719148	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18719149	18719198	1	-	0	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18719149	18719198	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	intron	18719199	18719376	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	CDS	18719377	18719763	1	-	0	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	exon	18719377	18719763	.	-	.	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
Ledus.S1	AUGUSTUS	start_codon	18719761	18719763	.	-	0	transcript_id "Ledus.S1G207400.t2"; gene_id "Ledus.S1G207400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2031.t1 is derived from g8894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14259878	14263982	.	-	.	Ledus.S2G191300
Ledus.S2	AUGUSTUS	transcript	14259878	14263982	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	stop_codon	14259875	14259877	.	-	0	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14259878	14260267	1	-	0	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14259878	14260267	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14260268	14260379	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14260380	14260519	0.99	-	2	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14260380	14260519	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14260520	14260643	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14260644	14260776	0.99	-	0	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14260644	14260776	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14260777	14260947	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14260948	14261080	1	-	1	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14260948	14261080	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14261081	14261186	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14261187	14261269	0.99	-	0	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14261187	14261269	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14261270	14261374	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14261375	14261453	1	-	1	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14261375	14261453	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14261454	14261661	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14261662	14261825	1	-	0	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14261662	14261825	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14261826	14261928	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14261929	14261994	0.97	-	0	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14261929	14261994	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14261995	14262158	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14262159	14262302	0.92	-	0	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14262159	14262302	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14262303	14262406	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14262407	14262501	0.35	-	2	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14262407	14262501	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14262502	14262602	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14262603	14262719	0.68	-	2	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14262603	14262719	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14262720	14262801	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14262802	14263234	1	-	0	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14262802	14263234	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14263235	14263322	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14263323	14263490	1	-	0	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14263323	14263490	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14263491	14263578	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14263579	14263764	1	-	0	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14263579	14263764	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	intron	14263765	14263862	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	CDS	14263863	14263982	1	-	0	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	exon	14263863	14263982	.	-	.	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
Ledus.S2	AUGUSTUS	start_codon	14263980	14263982	.	-	0	transcript_id "Ledus.S2G191300.t1"; gene_id "Ledus.S2G191300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8439.t1 is derived from g13111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11695486	11697526	.	+	.	Ledus.S5G121700
Ledus.S5	AUGUSTUS	transcript	11695486	11697526	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	start_codon	11695486	11695488	.	+	0	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	CDS	11695486	11695569	0.71	+	0	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	exon	11695486	11695569	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	intron	11695570	11695759	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	CDS	11695760	11695842	0.74	+	0	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	exon	11695760	11695842	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	intron	11695843	11696081	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	CDS	11696082	11696165	0.76	+	1	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	exon	11696082	11696165	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	intron	11696166	11696259	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	CDS	11696260	11696337	1	+	1	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	exon	11696260	11696337	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	intron	11696338	11696432	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	CDS	11696433	11696505	1	+	1	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	exon	11696433	11696505	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	intron	11696506	11696591	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	CDS	11696592	11696677	1	+	0	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	exon	11696592	11696677	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	intron	11696678	11696760	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	CDS	11696761	11696856	1	+	1	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	exon	11696761	11696856	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	intron	11696857	11696937	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	CDS	11696938	11697012	1	+	1	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	exon	11696938	11697012	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	intron	11697013	11697100	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	CDS	11697101	11697347	1	+	1	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	exon	11697101	11697347	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	intron	11697348	11697430	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	CDS	11697431	11697526	1	+	0	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	exon	11697431	11697526	.	+	.	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
Ledus.S5	AUGUSTUS	stop_codon	11697527	11697529	.	+	0	transcript_id "Ledus.S5G121700.t1"; gene_id "Ledus.S5G121700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg288.t1 is derived from g7149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1407059	1408971	.	+	.	Ledus.S2G017000
Ledus.S2	AUGUSTUS	transcript	1407059	1408971	.	+	.	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	start_codon	1407059	1407061	.	+	0	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	CDS	1407059	1407259	0.21	+	0	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	exon	1407059	1407259	.	+	.	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	intron	1407260	1407390	.	+	.	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	CDS	1407391	1407585	1	+	0	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	exon	1407391	1407585	.	+	.	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	intron	1407586	1408109	.	+	.	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	CDS	1408110	1408321	1	+	0	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	exon	1408110	1408321	.	+	.	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	intron	1408322	1408406	.	+	.	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	CDS	1408407	1408971	1	+	1	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	exon	1408407	1408971	.	+	.	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
Ledus.S2	AUGUSTUS	stop_codon	1408972	1408974	.	+	0	transcript_id "Ledus.S2G017000.t1"; gene_id "Ledus.S2G017000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6875.t1 is derived from g4319.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34906675	34909608	.	+	.	Ledus.S1G429600
Ledus.S1	AUGUSTUS	transcript	34906675	34909608	.	+	.	transcript_id "Ledus.S1G429600.t1"; gene_id "Ledus.S1G429600"
Ledus.S1	AUGUSTUS	start_codon	34906675	34906677	.	+	0	transcript_id "Ledus.S1G429600.t1"; gene_id "Ledus.S1G429600"
Ledus.S1	AUGUSTUS	CDS	34906675	34909608	0.55	+	0	transcript_id "Ledus.S1G429600.t1"; gene_id "Ledus.S1G429600"
Ledus.S1	AUGUSTUS	exon	34906675	34909608	.	+	.	transcript_id "Ledus.S1G429600.t1"; gene_id "Ledus.S1G429600"
Ledus.S1	AUGUSTUS	stop_codon	34909609	34909611	.	+	0	transcript_id "Ledus.S1G429600.t1"; gene_id "Ledus.S1G429600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11961.t1 is derived from g5580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8038204	8038865	.	+	.	Ledus.S4G111700
Ledus.S4	AUGUSTUS	transcript	8038204	8038865	.	+	.	transcript_id "Ledus.S4G111700.t1"; gene_id "Ledus.S4G111700"
Ledus.S4	AUGUSTUS	start_codon	8038204	8038206	.	+	0	transcript_id "Ledus.S4G111700.t1"; gene_id "Ledus.S4G111700"
Ledus.S4	AUGUSTUS	CDS	8038204	8038232	0.99	+	0	transcript_id "Ledus.S4G111700.t1"; gene_id "Ledus.S4G111700"
Ledus.S4	AUGUSTUS	exon	8038204	8038232	.	+	.	transcript_id "Ledus.S4G111700.t1"; gene_id "Ledus.S4G111700"
Ledus.S4	AUGUSTUS	intron	8038233	8038579	.	+	.	transcript_id "Ledus.S4G111700.t1"; gene_id "Ledus.S4G111700"
Ledus.S4	AUGUSTUS	CDS	8038580	8038765	0.99	+	1	transcript_id "Ledus.S4G111700.t1"; gene_id "Ledus.S4G111700"
Ledus.S4	AUGUSTUS	exon	8038580	8038765	.	+	.	transcript_id "Ledus.S4G111700.t1"; gene_id "Ledus.S4G111700"
Ledus.S4	AUGUSTUS	intron	8038766	8038840	.	+	.	transcript_id "Ledus.S4G111700.t1"; gene_id "Ledus.S4G111700"
Ledus.S4	AUGUSTUS	CDS	8038841	8038865	0.63	+	1	transcript_id "Ledus.S4G111700.t1"; gene_id "Ledus.S4G111700"
Ledus.S4	AUGUSTUS	exon	8038841	8038865	.	+	.	transcript_id "Ledus.S4G111700.t1"; gene_id "Ledus.S4G111700"
Ledus.S4	AUGUSTUS	stop_codon	8038866	8038868	.	+	0	transcript_id "Ledus.S4G111700.t1"; gene_id "Ledus.S4G111700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11761.t1 is derived from g5380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6608411	6609490	.	-	.	Ledus.S4G091700
Ledus.S4	AUGUSTUS	transcript	6608411	6609490	.	-	.	transcript_id "Ledus.S4G091700.t1"; gene_id "Ledus.S4G091700"
Ledus.S4	AUGUSTUS	stop_codon	6608408	6608410	.	-	0	transcript_id "Ledus.S4G091700.t1"; gene_id "Ledus.S4G091700"
Ledus.S4	AUGUSTUS	CDS	6608411	6609490	1	-	0	transcript_id "Ledus.S4G091700.t1"; gene_id "Ledus.S4G091700"
Ledus.S4	AUGUSTUS	exon	6608411	6609490	.	-	.	transcript_id "Ledus.S4G091700.t1"; gene_id "Ledus.S4G091700"
Ledus.S4	AUGUSTUS	start_codon	6609488	6609490	.	-	0	transcript_id "Ledus.S4G091700.t1"; gene_id "Ledus.S4G091700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3914.t1 is derived from g1350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13540380	13542799	.	+	.	Ledus.S1G133500
Ledus.S1	AUGUSTUS	transcript	13540380	13542799	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	start_codon	13540380	13540382	.	+	0	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	CDS	13540380	13540443	0.99	+	0	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	exon	13540380	13540443	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	intron	13540444	13540705	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	CDS	13540706	13540906	0.98	+	2	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	exon	13540706	13540906	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	intron	13540907	13540990	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	CDS	13540991	13541271	1	+	2	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	exon	13540991	13541271	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	intron	13541272	13541384	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	CDS	13541385	13541475	0.77	+	0	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	exon	13541385	13541475	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	intron	13541476	13541577	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	CDS	13541578	13541738	0.29	+	2	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	exon	13541578	13541738	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	intron	13541739	13541839	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	CDS	13541840	13542109	0.81	+	0	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	exon	13541840	13542109	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	intron	13542110	13542203	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	CDS	13542204	13542390	1	+	0	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	exon	13542204	13542390	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	intron	13542391	13542485	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	CDS	13542486	13542799	1	+	2	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	exon	13542486	13542799	.	+	.	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
Ledus.S1	AUGUSTUS	stop_codon	13542800	13542802	.	+	0	transcript_id "Ledus.S1G133500.t1"; gene_id "Ledus.S1G133500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9944.t1 is derived from g10974.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11413259	11423317	.	-	.	Ledus.S3G142100
Ledus.S3	AUGUSTUS	transcript	11413259	11423317	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	stop_codon	11413256	11413258	.	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11413259	11413540	0.83	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11413259	11413540	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11413541	11413634	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11413635	11413766	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11413635	11413766	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11413767	11413887	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11413888	11413980	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11413888	11413980	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11413981	11414086	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11414087	11414390	1	-	1	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11414087	11414390	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11414391	11414771	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11414772	11415056	1	-	1	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11414772	11415056	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11415057	11415130	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11415131	11415264	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11415131	11415264	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11415265	11415383	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11415384	11415617	0.84	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11415384	11415617	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11415618	11415697	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11415698	11415802	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11415698	11415802	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11415803	11416136	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11416137	11416298	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11416137	11416298	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11416299	11416444	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11416445	11416565	1	-	1	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11416445	11416565	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11416566	11416846	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11416847	11417016	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11416847	11417016	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11417017	11417178	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11417179	11417331	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11417179	11417331	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11417332	11417522	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11417523	11417822	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11417523	11417822	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11417823	11417928	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11417929	11418096	0.99	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11417929	11418096	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11418097	11418197	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11418198	11418356	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11418198	11418356	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11418357	11418443	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11418444	11418494	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11418444	11418494	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11418495	11418662	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11418663	11418873	1	-	1	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11418663	11418873	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11418874	11419004	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11419005	11419573	0.69	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11419005	11419573	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11419574	11419673	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11419674	11420090	0.99	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11419674	11420090	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11420091	11420277	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11420278	11420464	1	-	1	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11420278	11420464	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11420465	11420618	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11420619	11420724	1	-	2	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11420619	11420724	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11420725	11420847	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11420848	11420962	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11420848	11420962	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11420963	11421177	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11421178	11421285	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11421178	11421285	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11421286	11421583	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11421584	11421837	1	-	2	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11421584	11421837	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11421838	11421913	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11421914	11422031	1	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11421914	11422031	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11422032	11422485	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11422486	11422625	1	-	2	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11422486	11422625	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11422626	11422803	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11422804	11422916	1	-	1	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11422804	11422916	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	intron	11422917	11423042	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	CDS	11423043	11423317	0.79	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	exon	11423043	11423317	.	-	.	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
Ledus.S3	AUGUSTUS	start_codon	11423315	11423317	.	-	0	transcript_id "Ledus.S3G142100.t1"; gene_id "Ledus.S3G142100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2866.t1 is derived from g300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4274214	4275097	.	+	.	Ledus.S1G028700
Ledus.S1	AUGUSTUS	transcript	4274214	4275097	.	+	.	transcript_id "Ledus.S1G028700.t1"; gene_id "Ledus.S1G028700"
Ledus.S1	AUGUSTUS	start_codon	4274214	4274216	.	+	0	transcript_id "Ledus.S1G028700.t1"; gene_id "Ledus.S1G028700"
Ledus.S1	AUGUSTUS	CDS	4274214	4274361	0.02	+	0	transcript_id "Ledus.S1G028700.t1"; gene_id "Ledus.S1G028700"
Ledus.S1	AUGUSTUS	exon	4274214	4274361	.	+	.	transcript_id "Ledus.S1G028700.t1"; gene_id "Ledus.S1G028700"
Ledus.S1	AUGUSTUS	intron	4274362	4275056	.	+	.	transcript_id "Ledus.S1G028700.t1"; gene_id "Ledus.S1G028700"
Ledus.S1	AUGUSTUS	CDS	4275057	4275097	0.02	+	2	transcript_id "Ledus.S1G028700.t1"; gene_id "Ledus.S1G028700"
Ledus.S1	AUGUSTUS	exon	4275057	4275097	.	+	.	transcript_id "Ledus.S1G028700.t1"; gene_id "Ledus.S1G028700"
Ledus.S1	AUGUSTUS	stop_codon	4275098	4275100	.	+	0	transcript_id "Ledus.S1G028700.t1"; gene_id "Ledus.S1G028700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5610.t1 is derived from g3049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25359684	25363005	.	+	.	Ledus.S1G303100
Ledus.S1	AUGUSTUS	transcript	25359684	25363005	.	+	.	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	start_codon	25359684	25359686	.	+	0	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	CDS	25359684	25361412	0.72	+	0	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	exon	25359684	25361412	.	+	.	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	intron	25361413	25361511	.	+	.	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	CDS	25361512	25361639	1	+	2	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	exon	25361512	25361639	.	+	.	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	intron	25361640	25361735	.	+	.	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	CDS	25361736	25361961	0.99	+	0	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	exon	25361736	25361961	.	+	.	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	intron	25361962	25362056	.	+	.	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	CDS	25362057	25362091	0.95	+	2	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	exon	25362057	25362091	.	+	.	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	intron	25362092	25362177	.	+	.	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	CDS	25362178	25362183	0.84	+	0	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	exon	25362178	25362183	.	+	.	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	intron	25362184	25362279	.	+	.	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	CDS	25362280	25363005	1	+	0	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	exon	25362280	25363005	.	+	.	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
Ledus.S1	AUGUSTUS	stop_codon	25363006	25363008	.	+	0	transcript_id "Ledus.S1G303100.t1"; gene_id "Ledus.S1G303100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13105.t1 is derived from g6915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5748814	5749017	.	-	.	Ledus.S6G016700
Ledus.S6	AUGUSTUS	transcript	5748814	5749017	.	-	.	transcript_id "Ledus.S6G016700.t1"; gene_id "Ledus.S6G016700"
Ledus.S6	AUGUSTUS	stop_codon	5748811	5748813	.	-	0	transcript_id "Ledus.S6G016700.t1"; gene_id "Ledus.S6G016700"
Ledus.S6	AUGUSTUS	CDS	5748814	5749017	0.83	-	0	transcript_id "Ledus.S6G016700.t1"; gene_id "Ledus.S6G016700"
Ledus.S6	AUGUSTUS	exon	5748814	5749017	.	-	.	transcript_id "Ledus.S6G016700.t1"; gene_id "Ledus.S6G016700"
Ledus.S6	AUGUSTUS	start_codon	5749015	5749017	.	-	0	transcript_id "Ledus.S6G016700.t1"; gene_id "Ledus.S6G016700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5027.t1 is derived from g2466.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21202882	21204577	.	+	.	Ledus.S1G244800
Ledus.S1	AUGUSTUS	transcript	21202882	21204577	.	+	.	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	start_codon	21202882	21202884	.	+	0	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	CDS	21202882	21203002	0.51	+	0	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	exon	21202882	21203002	.	+	.	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	intron	21203003	21203340	.	+	.	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	CDS	21203341	21203595	0.78	+	2	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	exon	21203341	21203595	.	+	.	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	intron	21203596	21203972	.	+	.	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	CDS	21203973	21204144	0.23	+	2	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	exon	21203973	21204144	.	+	.	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	intron	21204145	21204273	.	+	.	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	CDS	21204274	21204577	0.55	+	1	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	exon	21204274	21204577	.	+	.	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
Ledus.S1	AUGUSTUS	stop_codon	21204578	21204580	.	+	0	transcript_id "Ledus.S1G244800.t1"; gene_id "Ledus.S1G244800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12651.t1 is derived from g6273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13615881	13617682	.	-	.	Ledus.S4G180700
Ledus.S4	AUGUSTUS	transcript	13615881	13617682	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	stop_codon	13615878	13615880	.	-	0	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	CDS	13615881	13615936	0.8	-	2	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	exon	13615881	13615936	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	intron	13615937	13616040	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	CDS	13616041	13616134	1	-	0	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	exon	13616041	13616134	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	intron	13616135	13616226	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	CDS	13616227	13616333	1	-	2	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	exon	13616227	13616333	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	intron	13616334	13616410	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	CDS	13616411	13616482	1	-	2	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	exon	13616411	13616482	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	intron	13616483	13616574	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	CDS	13616575	13616678	1	-	1	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	exon	13616575	13616678	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	intron	13616679	13616782	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	CDS	13616783	13617120	1	-	0	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	exon	13616783	13617120	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	intron	13617121	13617216	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	CDS	13617217	13617461	1	-	2	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	exon	13617217	13617461	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	intron	13617462	13617540	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	CDS	13617541	13617682	0.74	-	0	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	exon	13617541	13617682	.	-	.	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
Ledus.S4	AUGUSTUS	start_codon	13617680	13617682	.	-	0	transcript_id "Ledus.S4G180700.t1"; gene_id "Ledus.S4G180700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1178.t1 is derived from g8039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8247395	8247697	.	-	.	Ledus.S2G106000
Ledus.S2	AUGUSTUS	transcript	8247395	8247697	.	-	.	transcript_id "Ledus.S2G106000.t1"; gene_id "Ledus.S2G106000"
Ledus.S2	AUGUSTUS	stop_codon	8247392	8247394	.	-	0	transcript_id "Ledus.S2G106000.t1"; gene_id "Ledus.S2G106000"
Ledus.S2	AUGUSTUS	CDS	8247395	8247697	0.96	-	0	transcript_id "Ledus.S2G106000.t1"; gene_id "Ledus.S2G106000"
Ledus.S2	AUGUSTUS	exon	8247395	8247697	.	-	.	transcript_id "Ledus.S2G106000.t1"; gene_id "Ledus.S2G106000"
Ledus.S2	AUGUSTUS	start_codon	8247695	8247697	.	-	0	transcript_id "Ledus.S2G106000.t1"; gene_id "Ledus.S2G106000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10147.t1 is derived from g11177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13164200	13164723	.	+	.	Ledus.S3G162400
Ledus.S3	AUGUSTUS	transcript	13164200	13164723	.	+	.	transcript_id "Ledus.S3G162400.t1"; gene_id "Ledus.S3G162400"
Ledus.S3	AUGUSTUS	start_codon	13164200	13164202	.	+	0	transcript_id "Ledus.S3G162400.t1"; gene_id "Ledus.S3G162400"
Ledus.S3	AUGUSTUS	CDS	13164200	13164471	0.93	+	0	transcript_id "Ledus.S3G162400.t1"; gene_id "Ledus.S3G162400"
Ledus.S3	AUGUSTUS	exon	13164200	13164471	.	+	.	transcript_id "Ledus.S3G162400.t1"; gene_id "Ledus.S3G162400"
Ledus.S3	AUGUSTUS	intron	13164472	13164722	.	+	.	transcript_id "Ledus.S3G162400.t1"; gene_id "Ledus.S3G162400"
Ledus.S3	AUGUSTUS	CDS	13164723	13164723	0.79	+	1	transcript_id "Ledus.S3G162400.t1"; gene_id "Ledus.S3G162400"
Ledus.S3	AUGUSTUS	exon	13164723	13164723	.	+	.	transcript_id "Ledus.S3G162400.t1"; gene_id "Ledus.S3G162400"
Ledus.S3	AUGUSTUS	stop_codon	13164724	13164726	.	+	0	transcript_id "Ledus.S3G162400.t1"; gene_id "Ledus.S3G162400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12239.t1 is derived from g5859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10603861	10604529	.	+	.	Ledus.S4G139500
Ledus.S4	AUGUSTUS	transcript	10603861	10604529	.	+	.	transcript_id "Ledus.S4G139500.t1"; gene_id "Ledus.S4G139500"
Ledus.S4	AUGUSTUS	start_codon	10603861	10603863	.	+	0	transcript_id "Ledus.S4G139500.t1"; gene_id "Ledus.S4G139500"
Ledus.S4	AUGUSTUS	CDS	10603861	10603944	0.96	+	0	transcript_id "Ledus.S4G139500.t1"; gene_id "Ledus.S4G139500"
Ledus.S4	AUGUSTUS	exon	10603861	10603944	.	+	.	transcript_id "Ledus.S4G139500.t1"; gene_id "Ledus.S4G139500"
Ledus.S4	AUGUSTUS	intron	10603945	10604049	.	+	.	transcript_id "Ledus.S4G139500.t1"; gene_id "Ledus.S4G139500"
Ledus.S4	AUGUSTUS	CDS	10604050	10604529	0.81	+	0	transcript_id "Ledus.S4G139500.t1"; gene_id "Ledus.S4G139500"
Ledus.S4	AUGUSTUS	exon	10604050	10604529	.	+	.	transcript_id "Ledus.S4G139500.t1"; gene_id "Ledus.S4G139500"
Ledus.S4	AUGUSTUS	stop_codon	10604530	10604532	.	+	0	transcript_id "Ledus.S4G139500.t1"; gene_id "Ledus.S4G139500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg559.t1 is derived from g7420.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3354168	3354434	.	-	.	Ledus.S2G044100
Ledus.S2	AUGUSTUS	transcript	3354168	3354434	.	-	.	transcript_id "Ledus.S2G044100.t1"; gene_id "Ledus.S2G044100"
Ledus.S2	AUGUSTUS	stop_codon	3354165	3354167	.	-	0	transcript_id "Ledus.S2G044100.t1"; gene_id "Ledus.S2G044100"
Ledus.S2	AUGUSTUS	CDS	3354168	3354434	0.2	-	0	transcript_id "Ledus.S2G044100.t1"; gene_id "Ledus.S2G044100"
Ledus.S2	AUGUSTUS	exon	3354168	3354434	.	-	.	transcript_id "Ledus.S2G044100.t1"; gene_id "Ledus.S2G044100"
Ledus.S2	AUGUSTUS	start_codon	3354432	3354434	.	-	0	transcript_id "Ledus.S2G044100.t1"; gene_id "Ledus.S2G044100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2921.t1 is derived from g356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4588840	4590438	.	-	.	Ledus.S1G034200
Ledus.S1	AUGUSTUS	transcript	4588840	4590438	.	-	.	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	stop_codon	4588837	4588839	.	-	0	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	CDS	4588840	4588946	1	-	2	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	exon	4588840	4588946	.	-	.	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	intron	4588947	4589126	.	-	.	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	CDS	4589127	4589337	1	-	0	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	exon	4589127	4589337	.	-	.	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	intron	4589338	4589442	.	-	.	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	CDS	4589443	4589549	1	-	2	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	exon	4589443	4589549	.	-	.	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	intron	4589550	4589833	.	-	.	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	CDS	4589834	4589918	0.48	-	0	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	exon	4589834	4589918	.	-	.	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	intron	4589919	4590333	.	-	.	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	CDS	4590334	4590438	0.68	-	0	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	exon	4590334	4590438	.	-	.	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
Ledus.S1	AUGUSTUS	start_codon	4590436	4590438	.	-	0	transcript_id "Ledus.S1G034200.t1"; gene_id "Ledus.S1G034200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3485.t1 is derived from g920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8675918	8676256	.	-	.	Ledus.S1G090600
Ledus.S1	AUGUSTUS	transcript	8675918	8676256	.	-	.	transcript_id "Ledus.S1G090600.t1"; gene_id "Ledus.S1G090600"
Ledus.S1	AUGUSTUS	stop_codon	8675915	8675917	.	-	0	transcript_id "Ledus.S1G090600.t1"; gene_id "Ledus.S1G090600"
Ledus.S1	AUGUSTUS	CDS	8675918	8676256	0.26	-	0	transcript_id "Ledus.S1G090600.t1"; gene_id "Ledus.S1G090600"
Ledus.S1	AUGUSTUS	exon	8675918	8676256	.	-	.	transcript_id "Ledus.S1G090600.t1"; gene_id "Ledus.S1G090600"
Ledus.S1	AUGUSTUS	start_codon	8676254	8676256	.	-	0	transcript_id "Ledus.S1G090600.t1"; gene_id "Ledus.S1G090600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4941.t1 is derived from g2379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20807365	20810773	.	-	.	Ledus.S1G236200
Ledus.S1	AUGUSTUS	transcript	20807365	20810773	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	stop_codon	20807362	20807364	.	-	0	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	CDS	20807365	20807427	1	-	0	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	exon	20807365	20807427	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	intron	20807428	20807546	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	CDS	20807547	20807602	1	-	2	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	exon	20807547	20807602	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	intron	20807603	20807688	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	CDS	20807689	20807740	1	-	0	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	exon	20807689	20807740	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	intron	20807741	20807858	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	CDS	20807859	20807948	1	-	0	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	exon	20807859	20807948	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	intron	20807949	20808078	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	CDS	20808079	20808270	1	-	0	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	exon	20808079	20808270	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	intron	20808271	20808444	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	CDS	20808445	20808511	1	-	1	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	exon	20808445	20808511	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	intron	20808512	20808624	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	CDS	20808625	20808665	1	-	0	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	exon	20808625	20808665	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	intron	20808666	20808934	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	CDS	20808935	20809006	1	-	0	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	exon	20808935	20809006	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	intron	20809007	20809168	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	CDS	20809169	20809240	1	-	0	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	exon	20809169	20809240	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	intron	20809241	20809358	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	CDS	20809359	20809442	1	-	0	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	exon	20809359	20809442	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	intron	20809443	20809888	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	CDS	20809889	20809945	1	-	0	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	exon	20809889	20809945	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	intron	20809946	20810539	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	CDS	20810540	20810773	0.38	-	0	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	exon	20810540	20810773	.	-	.	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
Ledus.S1	AUGUSTUS	start_codon	20810771	20810773	.	-	0	transcript_id "Ledus.S1G236200.t1"; gene_id "Ledus.S1G236200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6538.t1 is derived from g3981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32208757	32215286	.	-	.	Ledus.S1G395900
Ledus.S1	AUGUSTUS	transcript	32208757	32215286	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	stop_codon	32208754	32208756	.	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32208757	32208808	0.79	-	1	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32208757	32208808	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32208809	32208923	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32208924	32209015	0.73	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32208924	32209015	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32209016	32209112	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32209113	32209190	0.66	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32209113	32209190	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32209191	32209265	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32209266	32209403	0.79	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32209266	32209403	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32209404	32209480	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32209481	32209835	0.43	-	1	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32209481	32209835	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32209836	32209957	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32209958	32210105	0.99	-	2	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32209958	32210105	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32210106	32210196	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32210197	32210335	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32210197	32210335	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32210336	32210427	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32210428	32210517	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32210428	32210517	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32210518	32210735	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32210736	32210897	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32210736	32210897	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32210898	32210991	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32210992	32211156	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32210992	32211156	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32211157	32211225	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32211226	32211363	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32211226	32211363	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32211364	32211447	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32211448	32211627	0.96	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32211448	32211627	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32211628	32211715	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32211716	32211844	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32211716	32211844	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32211845	32211916	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32211917	32212152	1	-	2	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32211917	32212152	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32212153	32212226	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32212227	32212389	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32212227	32212389	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32212390	32212473	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32212474	32212611	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32212474	32212611	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32212612	32212688	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32212689	32212922	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32212689	32212922	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32212923	32213002	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32213003	32213073	0.95	-	2	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32213003	32213073	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32213074	32213153	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32213154	32213201	0.95	-	2	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32213154	32213201	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32213202	32213453	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32213454	32213529	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32213454	32213529	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32213530	32213639	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32213640	32213675	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32213640	32213675	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32213676	32213812	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32213813	32213875	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32213813	32213875	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32213876	32214037	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32214038	32214118	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32214038	32214118	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32214119	32214234	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32214235	32214323	1	-	2	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32214235	32214323	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32214324	32214455	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32214456	32214573	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32214456	32214573	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32214574	32214659	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32214660	32214782	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32214660	32214782	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32214783	32214854	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32214855	32214935	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32214855	32214935	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32214936	32215013	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32215014	32215055	1	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32215014	32215055	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	intron	32215056	32215139	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	CDS	32215140	32215286	0.93	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	exon	32215140	32215286	.	-	.	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
Ledus.S1	AUGUSTUS	start_codon	32215284	32215286	.	-	0	transcript_id "Ledus.S1G395900.t1"; gene_id "Ledus.S1G395900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10874.t1 is derived from g4492.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	218233	219703	.	-	.	Ledus.S4G003000
Ledus.S4	AUGUSTUS	transcript	218233	219703	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	stop_codon	218230	218232	.	-	0	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	218233	218277	0.99	-	0	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	218233	218277	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	218278	218368	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	218369	218407	1	-	0	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	218369	218407	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	218408	218515	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	218516	218542	0.6	-	0	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	218516	218542	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	218543	218656	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	218657	218695	0.99	-	0	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	218657	218695	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	218696	218786	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	218787	218847	1	-	1	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	218787	218847	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	218848	218946	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	218947	219056	1	-	0	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	218947	219056	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	219057	219187	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	219188	219297	1	-	2	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	219188	219297	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	219298	219385	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	219386	219480	1	-	1	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	219386	219480	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	219481	219605	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	219606	219703	0.99	-	0	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	219606	219703	.	-	.	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	start_codon	219701	219703	.	-	0	transcript_id "Ledus.S4G003000.t1"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	transcript	218233	219703	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	stop_codon	218230	218232	.	-	0	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	218233	218277	1	-	0	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	218233	218277	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	218278	218368	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	218369	218407	1	-	0	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	218369	218407	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	218408	218515	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	218516	218542	0.63	-	0	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	218516	218542	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	218543	218656	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	218657	218695	0.98	-	0	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	218657	218695	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	218696	218786	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	218787	218847	1	-	1	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	218787	218847	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	218848	218946	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	218947	219056	1	-	0	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	218947	219056	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	219057	219187	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	219188	219297	0.75	-	2	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	219188	219297	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	219298	219554	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	219555	219570	0.65	-	0	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	219555	219570	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	intron	219571	219643	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	CDS	219644	219703	0.63	-	0	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	exon	219644	219703	.	-	.	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
Ledus.S4	AUGUSTUS	start_codon	219701	219703	.	-	0	transcript_id "Ledus.S4G003000.t2"; gene_id "Ledus.S4G003000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12097.t1 is derived from g5716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9492509	9493138	.	-	.	Ledus.S4G125300
Ledus.S4	AUGUSTUS	transcript	9492509	9493138	.	-	.	transcript_id "Ledus.S4G125300.t1"; gene_id "Ledus.S4G125300"
Ledus.S4	AUGUSTUS	stop_codon	9492506	9492508	.	-	0	transcript_id "Ledus.S4G125300.t1"; gene_id "Ledus.S4G125300"
Ledus.S4	AUGUSTUS	CDS	9492509	9493138	0.59	-	0	transcript_id "Ledus.S4G125300.t1"; gene_id "Ledus.S4G125300"
Ledus.S4	AUGUSTUS	exon	9492509	9493138	.	-	.	transcript_id "Ledus.S4G125300.t1"; gene_id "Ledus.S4G125300"
Ledus.S4	AUGUSTUS	start_codon	9493136	9493138	.	-	0	transcript_id "Ledus.S4G125300.t1"; gene_id "Ledus.S4G125300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12548.t1 is derived from g6170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12831430	12832861	.	-	.	Ledus.S4G170400
Ledus.S4	AUGUSTUS	transcript	12831430	12832861	.	-	.	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	stop_codon	12831427	12831429	.	-	0	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	CDS	12831430	12831868	1	-	1	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	exon	12831430	12831868	.	-	.	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	intron	12831869	12831950	.	-	.	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	CDS	12831951	12832135	1	-	0	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	exon	12831951	12832135	.	-	.	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	intron	12832136	12832216	.	-	.	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	CDS	12832217	12832390	0.92	-	0	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	exon	12832217	12832390	.	-	.	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	intron	12832391	12832490	.	-	.	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	CDS	12832491	12832729	0.99	-	2	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	exon	12832491	12832729	.	-	.	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	intron	12832730	12832809	.	-	.	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	CDS	12832810	12832861	0.87	-	0	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	exon	12832810	12832861	.	-	.	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
Ledus.S4	AUGUSTUS	start_codon	12832859	12832861	.	-	0	transcript_id "Ledus.S4G170400.t1"; gene_id "Ledus.S4G170400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10979.t1 is derived from g4597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	987000	987845	.	-	.	Ledus.S4G013500
Ledus.S4	AUGUSTUS	transcript	987000	987845	.	-	.	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	stop_codon	986997	986999	.	-	0	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	CDS	987000	987101	0.79	-	0	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	exon	987000	987101	.	-	.	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	intron	987102	987184	.	-	.	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	CDS	987185	987250	0.37	-	0	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	exon	987185	987250	.	-	.	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	intron	987251	987560	.	-	.	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	CDS	987561	987671	0.39	-	0	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	exon	987561	987671	.	-	.	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	intron	987672	987767	.	-	.	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	CDS	987768	987845	0.83	-	0	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	exon	987768	987845	.	-	.	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
Ledus.S4	AUGUSTUS	start_codon	987843	987845	.	-	0	transcript_id "Ledus.S4G013500.t1"; gene_id "Ledus.S4G013500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10375.t1 is derived from g11405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14588738	14589656	.	-	.	Ledus.S3G185200
Ledus.S3	AUGUSTUS	transcript	14588738	14589656	.	-	.	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	stop_codon	14588735	14588737	.	-	0	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	CDS	14588738	14588816	0.98	-	1	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	exon	14588738	14588816	.	-	.	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	intron	14588817	14588903	.	-	.	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	CDS	14588904	14588985	1	-	2	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	exon	14588904	14588985	.	-	.	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	intron	14588986	14589067	.	-	.	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	CDS	14589068	14589349	1	-	2	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	exon	14589068	14589349	.	-	.	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	intron	14589350	14589435	.	-	.	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	CDS	14589436	14589493	1	-	0	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	exon	14589436	14589493	.	-	.	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	intron	14589494	14589566	.	-	.	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	CDS	14589567	14589656	1	-	0	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	exon	14589567	14589656	.	-	.	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
Ledus.S3	AUGUSTUS	start_codon	14589654	14589656	.	-	0	transcript_id "Ledus.S3G185200.t1"; gene_id "Ledus.S3G185200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3896.t1 is derived from g1332.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13470018	13470530	.	+	.	Ledus.S1G131700
Ledus.S1	AUGUSTUS	transcript	13470018	13470530	.	+	.	transcript_id "Ledus.S1G131700.t1"; gene_id "Ledus.S1G131700"
Ledus.S1	AUGUSTUS	start_codon	13470018	13470020	.	+	0	transcript_id "Ledus.S1G131700.t1"; gene_id "Ledus.S1G131700"
Ledus.S1	AUGUSTUS	CDS	13470018	13470530	0.89	+	0	transcript_id "Ledus.S1G131700.t1"; gene_id "Ledus.S1G131700"
Ledus.S1	AUGUSTUS	exon	13470018	13470530	.	+	.	transcript_id "Ledus.S1G131700.t1"; gene_id "Ledus.S1G131700"
Ledus.S1	AUGUSTUS	stop_codon	13470531	13470533	.	+	0	transcript_id "Ledus.S1G131700.t1"; gene_id "Ledus.S1G131700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg385.t1 is derived from g7246.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2145156	2149634	.	+	.	Ledus.S2G026700
Ledus.S2	AUGUSTUS	transcript	2145156	2149634	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	start_codon	2145156	2145158	.	+	0	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2145156	2145213	1	+	0	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2145156	2145213	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2145214	2145309	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2145310	2145617	1	+	2	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2145310	2145617	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2145618	2145684	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2145685	2145953	1	+	0	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2145685	2145953	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2145954	2146048	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2146049	2146306	1	+	1	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2146049	2146306	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2146307	2146399	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2146400	2146638	1	+	1	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2146400	2146638	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2146639	2146732	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2146733	2146868	1	+	2	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2146733	2146868	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2146869	2146952	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2146953	2147024	1	+	1	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2146953	2147024	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2147025	2147143	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2147144	2147215	1	+	1	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2147144	2147215	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2147216	2147336	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2147337	2147399	1	+	1	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2147337	2147399	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2147400	2147478	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2147479	2147550	0.4	+	1	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2147479	2147550	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2147551	2147663	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2147664	2147881	0.46	+	1	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2147664	2147881	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2147882	2147969	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2147970	2148166	0.77	+	2	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2147970	2148166	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2148167	2148241	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2148242	2148434	0.79	+	0	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2148242	2148434	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2148435	2148534	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2148535	2148700	1	+	2	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2148535	2148700	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2148701	2148770	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2148771	2148894	1	+	1	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2148771	2148894	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2148895	2149042	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2149043	2149166	1	+	0	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2149043	2149166	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2149167	2149314	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2149315	2149361	0.87	+	2	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2149315	2149361	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	intron	2149362	2149595	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	CDS	2149596	2149634	0.97	+	0	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	exon	2149596	2149634	.	+	.	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
Ledus.S2	AUGUSTUS	stop_codon	2149635	2149637	.	+	0	transcript_id "Ledus.S2G026700.t1"; gene_id "Ledus.S2G026700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2599.t1 is derived from g32.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	274279	274976	.	+	.	Ledus.S1G002000
Ledus.S1	AUGUSTUS	transcript	274279	274976	.	+	.	transcript_id "Ledus.S1G002000.t1"; gene_id "Ledus.S1G002000"
Ledus.S1	AUGUSTUS	start_codon	274279	274281	.	+	0	transcript_id "Ledus.S1G002000.t1"; gene_id "Ledus.S1G002000"
Ledus.S1	AUGUSTUS	CDS	274279	274546	0.38	+	0	transcript_id "Ledus.S1G002000.t1"; gene_id "Ledus.S1G002000"
Ledus.S1	AUGUSTUS	exon	274279	274546	.	+	.	transcript_id "Ledus.S1G002000.t1"; gene_id "Ledus.S1G002000"
Ledus.S1	AUGUSTUS	intron	274547	274665	.	+	.	transcript_id "Ledus.S1G002000.t1"; gene_id "Ledus.S1G002000"
Ledus.S1	AUGUSTUS	CDS	274666	274976	0.43	+	2	transcript_id "Ledus.S1G002000.t1"; gene_id "Ledus.S1G002000"
Ledus.S1	AUGUSTUS	exon	274666	274976	.	+	.	transcript_id "Ledus.S1G002000.t1"; gene_id "Ledus.S1G002000"
Ledus.S1	AUGUSTUS	stop_codon	274977	274979	.	+	0	transcript_id "Ledus.S1G002000.t1"; gene_id "Ledus.S1G002000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1478.t1 is derived from g8339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10443323	10454896	.	+	.	Ledus.S2G136000
Ledus.S2	AUGUSTUS	transcript	10443323	10454896	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	start_codon	10443323	10443325	.	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10443323	10443460	0.99	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10443323	10443460	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10443461	10443567	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10443568	10443663	0.99	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10443568	10443663	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10443664	10443755	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10443756	10443830	0.98	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10443756	10443830	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10443831	10443934	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10443935	10444039	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10443935	10444039	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10444040	10444130	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10444131	10444241	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10444131	10444241	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10444242	10444367	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10444368	10444527	0.91	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10444368	10444527	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10444528	10444648	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10444649	10444734	0.91	+	2	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10444649	10444734	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10444735	10444908	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10444909	10445031	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10444909	10445031	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10445032	10445127	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10445128	10445334	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10445128	10445334	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10445335	10445492	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10445493	10445582	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10445493	10445582	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10445583	10445733	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10445734	10445895	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10445734	10445895	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10445896	10445976	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10445977	10446093	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10445977	10446093	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10446094	10446182	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10446183	10446389	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10446183	10446389	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10446390	10446474	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10446475	10446576	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10446475	10446576	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10446577	10446683	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10446684	10446830	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10446684	10446830	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10446831	10446966	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10446967	10447097	0.99	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10446967	10447097	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10447098	10447210	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10447211	10447330	1	+	1	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10447211	10447330	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10447331	10447611	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10447612	10447750	1	+	1	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10447612	10447750	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10447751	10447990	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10447991	10448188	0.76	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10447991	10448188	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10448189	10448291	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10448292	10448410	0.97	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10448292	10448410	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10448411	10448577	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10448578	10448728	1	+	1	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10448578	10448728	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10448729	10448850	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10448851	10448963	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10448851	10448963	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10448964	10449069	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10449070	10449151	1	+	1	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10449070	10449151	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10449152	10449305	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10449306	10449392	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10449306	10449392	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10449393	10449508	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10449509	10449586	0.52	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10449509	10449586	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10449587	10449674	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10449675	10449872	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10449675	10449872	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10449873	10450054	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10450055	10450147	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10450055	10450147	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10450148	10450238	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10450239	10450349	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10450239	10450349	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10450350	10450442	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10450443	10450613	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10450443	10450613	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10450614	10450699	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10450700	10450755	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10450700	10450755	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10450756	10450843	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10450844	10450916	1	+	1	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10450844	10450916	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10450917	10451050	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10451051	10451244	0.96	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10451051	10451244	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10451245	10451354	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10451355	10451484	0.97	+	1	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10451355	10451484	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10451485	10451599	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10451600	10451677	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10451600	10451677	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10451678	10451814	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10451815	10451979	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10451815	10451979	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10451980	10452191	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10452192	10452365	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10452192	10452365	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10452366	10452793	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10452794	10452937	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10452794	10452937	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10452938	10453158	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10453159	10453302	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10453159	10453302	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10453303	10453406	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10453407	10453565	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10453407	10453565	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10453566	10453728	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10453729	10453839	0.95	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10453729	10453839	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10453840	10453943	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10453944	10454084	0.92	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10453944	10454084	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10454085	10454195	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10454196	10454296	0.91	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10454196	10454296	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10454297	10454382	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10454383	10454502	1	+	1	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10454383	10454502	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10454503	10454586	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10454587	10454722	1	+	1	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10454587	10454722	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	intron	10454723	10454812	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	CDS	10454813	10454896	1	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	exon	10454813	10454896	.	+	.	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
Ledus.S2	AUGUSTUS	stop_codon	10454897	10454899	.	+	0	transcript_id "Ledus.S2G136000.t1"; gene_id "Ledus.S2G136000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11289.t1 is derived from g4907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3402751	3404739	.	+	.	Ledus.S4G044500
Ledus.S4	AUGUSTUS	transcript	3402751	3404739	.	+	.	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	start_codon	3402751	3402753	.	+	0	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	CDS	3402751	3402949	1	+	0	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	exon	3402751	3402949	.	+	.	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	intron	3402950	3403077	.	+	.	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	CDS	3403078	3403221	0.69	+	2	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	exon	3403078	3403221	.	+	.	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	intron	3403222	3403327	.	+	.	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	CDS	3403328	3403399	0.46	+	2	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	exon	3403328	3403399	.	+	.	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	intron	3403400	3403531	.	+	.	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	CDS	3403532	3404739	0.49	+	2	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	exon	3403532	3404739	.	+	.	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
Ledus.S4	AUGUSTUS	stop_codon	3404740	3404742	.	+	0	transcript_id "Ledus.S4G044500.t1"; gene_id "Ledus.S4G044500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12633.t1 is derived from g6255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13524032	13524538	.	+	.	Ledus.S4G178900
Ledus.S4	AUGUSTUS	transcript	13524032	13524538	.	+	.	transcript_id "Ledus.S4G178900.t1"; gene_id "Ledus.S4G178900"
Ledus.S4	AUGUSTUS	start_codon	13524032	13524034	.	+	0	transcript_id "Ledus.S4G178900.t1"; gene_id "Ledus.S4G178900"
Ledus.S4	AUGUSTUS	CDS	13524032	13524538	0.98	+	0	transcript_id "Ledus.S4G178900.t1"; gene_id "Ledus.S4G178900"
Ledus.S4	AUGUSTUS	exon	13524032	13524538	.	+	.	transcript_id "Ledus.S4G178900.t1"; gene_id "Ledus.S4G178900"
Ledus.S4	AUGUSTUS	stop_codon	13524539	13524541	.	+	0	transcript_id "Ledus.S4G178900.t1"; gene_id "Ledus.S4G178900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4889.t1 is derived from g2327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20553551	20556319	.	+	.	Ledus.S1G231000
Ledus.S1	AUGUSTUS	transcript	20553551	20556319	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	start_codon	20553551	20553553	.	+	0	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	CDS	20553551	20553599	0.96	+	0	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	exon	20553551	20553599	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	intron	20553600	20553674	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	CDS	20553675	20553773	0.84	+	2	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	exon	20553675	20553773	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	intron	20553774	20553879	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	CDS	20553880	20553997	1	+	2	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	exon	20553880	20553997	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	intron	20553998	20554089	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	CDS	20554090	20554191	1	+	1	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	exon	20554090	20554191	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	intron	20554192	20554270	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	CDS	20554271	20554349	1	+	1	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	exon	20554271	20554349	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	intron	20554350	20554496	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	CDS	20554497	20554580	1	+	0	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	exon	20554497	20554580	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	intron	20554581	20554715	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	CDS	20554716	20554811	1	+	0	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	exon	20554716	20554811	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	intron	20554812	20554961	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	CDS	20554962	20555012	0.97	+	0	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	exon	20554962	20555012	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	intron	20555013	20555125	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	CDS	20555126	20555200	0.97	+	0	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	exon	20555126	20555200	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	intron	20555201	20555395	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	CDS	20555396	20555476	1	+	0	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	exon	20555396	20555476	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	intron	20555477	20555608	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	CDS	20555609	20556319	0.74	+	0	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	exon	20555609	20556319	.	+	.	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
Ledus.S1	AUGUSTUS	stop_codon	20556320	20556322	.	+	0	transcript_id "Ledus.S1G231000.t1"; gene_id "Ledus.S1G231000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2236.t1 is derived from g9099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16230041	16231115	.	+	.	Ledus.S2G211800
Ledus.S2	AUGUSTUS	transcript	16230041	16231115	.	+	.	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	start_codon	16230041	16230043	.	+	0	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	CDS	16230041	16230373	0.9	+	0	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	exon	16230041	16230373	.	+	.	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	intron	16230374	16230631	.	+	.	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	CDS	16230632	16230721	0.98	+	0	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	exon	16230632	16230721	.	+	.	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	intron	16230722	16230807	.	+	.	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	CDS	16230808	16230860	0.5	+	0	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	exon	16230808	16230860	.	+	.	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	intron	16230861	16230922	.	+	.	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	CDS	16230923	16231115	0.48	+	1	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	exon	16230923	16231115	.	+	.	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
Ledus.S2	AUGUSTUS	stop_codon	16231116	16231118	.	+	0	transcript_id "Ledus.S2G211800.t1"; gene_id "Ledus.S2G211800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4858.t1 is derived from g2296.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20235096	20236730	.	-	.	Ledus.S1G227900
Ledus.S1	AUGUSTUS	transcript	20235096	20236730	.	-	.	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	stop_codon	20235093	20235095	.	-	0	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	CDS	20235096	20235344	0.9	-	0	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	exon	20235096	20235344	.	-	.	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	intron	20235345	20235461	.	-	.	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	CDS	20235462	20235581	0.7	-	0	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	exon	20235462	20235581	.	-	.	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	intron	20235582	20235743	.	-	.	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	CDS	20235744	20235911	0.9	-	0	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	exon	20235744	20235911	.	-	.	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	intron	20235912	20236098	.	-	.	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	CDS	20236099	20236312	0.75	-	1	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	exon	20236099	20236312	.	-	.	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	intron	20236313	20236528	.	-	.	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	CDS	20236529	20236565	0.98	-	2	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	exon	20236529	20236565	.	-	.	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	intron	20236566	20236696	.	-	.	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	CDS	20236697	20236730	0.78	-	0	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	exon	20236697	20236730	.	-	.	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
Ledus.S1	AUGUSTUS	start_codon	20236728	20236730	.	-	0	transcript_id "Ledus.S1G227900.t1"; gene_id "Ledus.S1G227900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11080.t1 is derived from g4698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1633042	1635800	.	+	.	Ledus.S4G023600
Ledus.S4	AUGUSTUS	transcript	1633042	1635800	.	+	.	transcript_id "Ledus.S4G023600.t1"; gene_id "Ledus.S4G023600"
Ledus.S4	AUGUSTUS	start_codon	1633042	1633044	.	+	0	transcript_id "Ledus.S4G023600.t1"; gene_id "Ledus.S4G023600"
Ledus.S4	AUGUSTUS	CDS	1633042	1634359	1	+	0	transcript_id "Ledus.S4G023600.t1"; gene_id "Ledus.S4G023600"
Ledus.S4	AUGUSTUS	exon	1633042	1634359	.	+	.	transcript_id "Ledus.S4G023600.t1"; gene_id "Ledus.S4G023600"
Ledus.S4	AUGUSTUS	intron	1634360	1634994	.	+	.	transcript_id "Ledus.S4G023600.t1"; gene_id "Ledus.S4G023600"
Ledus.S4	AUGUSTUS	CDS	1634995	1635170	1	+	2	transcript_id "Ledus.S4G023600.t1"; gene_id "Ledus.S4G023600"
Ledus.S4	AUGUSTUS	exon	1634995	1635170	.	+	.	transcript_id "Ledus.S4G023600.t1"; gene_id "Ledus.S4G023600"
Ledus.S4	AUGUSTUS	intron	1635171	1635269	.	+	.	transcript_id "Ledus.S4G023600.t1"; gene_id "Ledus.S4G023600"
Ledus.S4	AUGUSTUS	CDS	1635270	1635800	1	+	0	transcript_id "Ledus.S4G023600.t1"; gene_id "Ledus.S4G023600"
Ledus.S4	AUGUSTUS	exon	1635270	1635800	.	+	.	transcript_id "Ledus.S4G023600.t1"; gene_id "Ledus.S4G023600"
Ledus.S4	AUGUSTUS	stop_codon	1635801	1635803	.	+	0	transcript_id "Ledus.S4G023600.t1"; gene_id "Ledus.S4G023600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6011.t1 is derived from g3454.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28324131	28325433	.	-	.	Ledus.S1G343200
Ledus.S1	AUGUSTUS	transcript	28324131	28325433	.	-	.	transcript_id "Ledus.S1G343200.t1"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	stop_codon	28324128	28324130	.	-	0	transcript_id "Ledus.S1G343200.t1"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	CDS	28324131	28324196	0.98	-	0	transcript_id "Ledus.S1G343200.t1"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	exon	28324131	28324196	.	-	.	transcript_id "Ledus.S1G343200.t1"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	intron	28324197	28324479	.	-	.	transcript_id "Ledus.S1G343200.t1"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	CDS	28324480	28325433	1	-	0	transcript_id "Ledus.S1G343200.t1"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	exon	28324480	28325433	.	-	.	transcript_id "Ledus.S1G343200.t1"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	start_codon	28325431	28325433	.	-	0	transcript_id "Ledus.S1G343200.t1"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	transcript	28324150	28325433	.	-	.	transcript_id "Ledus.S1G343200.t2"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	stop_codon	28324147	28324149	.	-	0	transcript_id "Ledus.S1G343200.t2"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	CDS	28324150	28324196	0.97	-	2	transcript_id "Ledus.S1G343200.t2"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	exon	28324150	28324196	.	-	.	transcript_id "Ledus.S1G343200.t2"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	intron	28324197	28324436	.	-	.	transcript_id "Ledus.S1G343200.t2"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	CDS	28324437	28325433	1	-	0	transcript_id "Ledus.S1G343200.t2"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	exon	28324437	28325433	.	-	.	transcript_id "Ledus.S1G343200.t2"; gene_id "Ledus.S1G343200"
Ledus.S1	AUGUSTUS	start_codon	28325431	28325433	.	-	0	transcript_id "Ledus.S1G343200.t2"; gene_id "Ledus.S1G343200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7495.t1 is derived from g12166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3452286	3453150	.	+	.	Ledus.S5G027300
Ledus.S5	AUGUSTUS	transcript	3452286	3453150	.	+	.	transcript_id "Ledus.S5G027300.t1"; gene_id "Ledus.S5G027300"
Ledus.S5	AUGUSTUS	start_codon	3452286	3452288	.	+	0	transcript_id "Ledus.S5G027300.t1"; gene_id "Ledus.S5G027300"
Ledus.S5	AUGUSTUS	CDS	3452286	3452721	0.72	+	0	transcript_id "Ledus.S5G027300.t1"; gene_id "Ledus.S5G027300"
Ledus.S5	AUGUSTUS	exon	3452286	3452721	.	+	.	transcript_id "Ledus.S5G027300.t1"; gene_id "Ledus.S5G027300"
Ledus.S5	AUGUSTUS	intron	3452722	3452829	.	+	.	transcript_id "Ledus.S5G027300.t1"; gene_id "Ledus.S5G027300"
Ledus.S5	AUGUSTUS	CDS	3452830	3452926	0.78	+	2	transcript_id "Ledus.S5G027300.t1"; gene_id "Ledus.S5G027300"
Ledus.S5	AUGUSTUS	exon	3452830	3452926	.	+	.	transcript_id "Ledus.S5G027300.t1"; gene_id "Ledus.S5G027300"
Ledus.S5	AUGUSTUS	intron	3452927	3453023	.	+	.	transcript_id "Ledus.S5G027300.t1"; gene_id "Ledus.S5G027300"
Ledus.S5	AUGUSTUS	CDS	3453024	3453150	1	+	1	transcript_id "Ledus.S5G027300.t1"; gene_id "Ledus.S5G027300"
Ledus.S5	AUGUSTUS	exon	3453024	3453150	.	+	.	transcript_id "Ledus.S5G027300.t1"; gene_id "Ledus.S5G027300"
Ledus.S5	AUGUSTUS	stop_codon	3453151	3453153	.	+	0	transcript_id "Ledus.S5G027300.t1"; gene_id "Ledus.S5G027300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7075.t1 is derived from g6606.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1251535	1251813	.	+	.	Ledus.C7G013600
Ledus.C7	AUGUSTUS	transcript	1251535	1251813	.	+	.	transcript_id "Ledus.C7G013600.t1"; gene_id "Ledus.C7G013600"
Ledus.C7	AUGUSTUS	start_codon	1251535	1251537	.	+	0	transcript_id "Ledus.C7G013600.t1"; gene_id "Ledus.C7G013600"
Ledus.C7	AUGUSTUS	CDS	1251535	1251813	0.6	+	0	transcript_id "Ledus.C7G013600.t1"; gene_id "Ledus.C7G013600"
Ledus.C7	AUGUSTUS	exon	1251535	1251813	.	+	.	transcript_id "Ledus.C7G013600.t1"; gene_id "Ledus.C7G013600"
Ledus.C7	AUGUSTUS	stop_codon	1251814	1251816	.	+	0	transcript_id "Ledus.C7G013600.t1"; gene_id "Ledus.C7G013600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3584.t1 is derived from g1020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9810253	9813030	.	+	.	Ledus.S1G100500
Ledus.S1	AUGUSTUS	transcript	9810253	9813030	.	+	.	transcript_id "Ledus.S1G100500.t1"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	start_codon	9810253	9810255	.	+	0	transcript_id "Ledus.S1G100500.t1"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	CDS	9810253	9810666	0.59	+	0	transcript_id "Ledus.S1G100500.t1"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	exon	9810253	9810666	.	+	.	transcript_id "Ledus.S1G100500.t1"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	intron	9810667	9811281	.	+	.	transcript_id "Ledus.S1G100500.t1"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	CDS	9811282	9813030	0.99	+	0	transcript_id "Ledus.S1G100500.t1"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	exon	9811282	9813030	.	+	.	transcript_id "Ledus.S1G100500.t1"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	stop_codon	9813031	9813033	.	+	0	transcript_id "Ledus.S1G100500.t1"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	transcript	9810253	9813030	.	+	.	transcript_id "Ledus.S1G100500.t2"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	start_codon	9810253	9810255	.	+	0	transcript_id "Ledus.S1G100500.t2"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	CDS	9810253	9810651	0.52	+	0	transcript_id "Ledus.S1G100500.t2"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	exon	9810253	9810651	.	+	.	transcript_id "Ledus.S1G100500.t2"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	intron	9810652	9811281	.	+	.	transcript_id "Ledus.S1G100500.t2"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	CDS	9811282	9813030	1	+	0	transcript_id "Ledus.S1G100500.t2"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	exon	9811282	9813030	.	+	.	transcript_id "Ledus.S1G100500.t2"; gene_id "Ledus.S1G100500"
Ledus.S1	AUGUSTUS	stop_codon	9813031	9813033	.	+	0	transcript_id "Ledus.S1G100500.t2"; gene_id "Ledus.S1G100500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5760.t1 is derived from g3201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26534121	26535709	.	-	.	Ledus.S1G318100
Ledus.S1	AUGUSTUS	transcript	26534121	26535709	.	-	.	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	stop_codon	26534118	26534120	.	-	0	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	CDS	26534121	26534383	1	-	2	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	exon	26534121	26534383	.	-	.	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	intron	26534384	26534504	.	-	.	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	CDS	26534505	26534763	1	-	0	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	exon	26534505	26534763	.	-	.	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	intron	26534764	26534894	.	-	.	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	CDS	26534895	26535052	1	-	2	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	exon	26534895	26535052	.	-	.	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	intron	26535053	26535148	.	-	.	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	CDS	26535149	26535382	1	-	2	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	exon	26535149	26535382	.	-	.	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	intron	26535383	26535462	.	-	.	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	CDS	26535463	26535709	0.95	-	0	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	exon	26535463	26535709	.	-	.	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
Ledus.S1	AUGUSTUS	start_codon	26535707	26535709	.	-	0	transcript_id "Ledus.S1G318100.t1"; gene_id "Ledus.S1G318100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2788.t1 is derived from g222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3710939	3712835	.	-	.	Ledus.S1G020900
Ledus.S1	AUGUSTUS	transcript	3710939	3712835	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	stop_codon	3710936	3710938	.	-	0	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	CDS	3710939	3711017	0.63	-	1	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	exon	3710939	3711017	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	intron	3711018	3711085	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	CDS	3711086	3711309	0.69	-	0	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	exon	3711086	3711309	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	intron	3711310	3711414	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	CDS	3711415	3711668	1	-	2	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	exon	3711415	3711668	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	intron	3711669	3711797	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	CDS	3711798	3711858	0.94	-	0	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	exon	3711798	3711858	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	intron	3711859	3711972	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	CDS	3711973	3712048	0.94	-	1	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	exon	3711973	3712048	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	intron	3712049	3712124	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	CDS	3712125	3712270	1	-	0	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	exon	3712125	3712270	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	intron	3712271	3712362	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	CDS	3712363	3712578	1	-	0	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	exon	3712363	3712578	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	intron	3712579	3712676	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	CDS	3712677	3712835	1	-	0	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	exon	3712677	3712835	.	-	.	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
Ledus.S1	AUGUSTUS	start_codon	3712833	3712835	.	-	0	transcript_id "Ledus.S1G020900.t1"; gene_id "Ledus.S1G020900"
# This transcript jg4743.t2 is derived from g2181.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4743.t3 is derived from g2181.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4744.t1 is derived from g2182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19516230	19516887	.	-	.	Ledus.S1G216500
Ledus.S1	AUGUSTUS	transcript	19516230	19516887	.	-	.	transcript_id "Ledus.S1G216500.t1"; gene_id "Ledus.S1G216500"
Ledus.S1	AUGUSTUS	stop_codon	19516227	19516229	.	-	0	transcript_id "Ledus.S1G216500.t1"; gene_id "Ledus.S1G216500"
Ledus.S1	AUGUSTUS	CDS	19516230	19516413	0.64	-	1	transcript_id "Ledus.S1G216500.t1"; gene_id "Ledus.S1G216500"
Ledus.S1	AUGUSTUS	exon	19516230	19516413	.	-	.	transcript_id "Ledus.S1G216500.t1"; gene_id "Ledus.S1G216500"
Ledus.S1	AUGUSTUS	intron	19516414	19516516	.	-	.	transcript_id "Ledus.S1G216500.t1"; gene_id "Ledus.S1G216500"
Ledus.S1	AUGUSTUS	CDS	19516517	19516887	0.39	-	0	transcript_id "Ledus.S1G216500.t1"; gene_id "Ledus.S1G216500"
Ledus.S1	AUGUSTUS	exon	19516517	19516887	.	-	.	transcript_id "Ledus.S1G216500.t1"; gene_id "Ledus.S1G216500"
Ledus.S1	AUGUSTUS	start_codon	19516885	19516887	.	-	0	transcript_id "Ledus.S1G216500.t1"; gene_id "Ledus.S1G216500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6486.t1 is derived from g3929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31586348	31588038	.	-	.	Ledus.S1G390700
Ledus.S1	AUGUSTUS	transcript	31586348	31588038	.	-	.	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	stop_codon	31586345	31586347	.	-	0	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	CDS	31586348	31586520	0.99	-	2	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	exon	31586348	31586520	.	-	.	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	intron	31586521	31586610	.	-	.	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	CDS	31586611	31586989	1	-	0	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	exon	31586611	31586989	.	-	.	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	intron	31586990	31587071	.	-	.	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	CDS	31587072	31587260	1	-	0	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	exon	31587072	31587260	.	-	.	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	intron	31587261	31587408	.	-	.	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	CDS	31587409	31587431	0.94	-	2	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	exon	31587409	31587431	.	-	.	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	intron	31587432	31587542	.	-	.	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	CDS	31587543	31588038	0.9	-	0	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	exon	31587543	31588038	.	-	.	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
Ledus.S1	AUGUSTUS	start_codon	31588036	31588038	.	-	0	transcript_id "Ledus.S1G390700.t1"; gene_id "Ledus.S1G390700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12949.t1 is derived from g6759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	597180	597464	.	+	.	Ledus.S6G001100
Ledus.S6	AUGUSTUS	transcript	597180	597464	.	+	.	transcript_id "Ledus.S6G001100.t1"; gene_id "Ledus.S6G001100"
Ledus.S6	AUGUSTUS	start_codon	597180	597182	.	+	0	transcript_id "Ledus.S6G001100.t1"; gene_id "Ledus.S6G001100"
Ledus.S6	AUGUSTUS	CDS	597180	597464	0.53	+	0	transcript_id "Ledus.S6G001100.t1"; gene_id "Ledus.S6G001100"
Ledus.S6	AUGUSTUS	exon	597180	597464	.	+	.	transcript_id "Ledus.S6G001100.t1"; gene_id "Ledus.S6G001100"
Ledus.S6	AUGUSTUS	stop_codon	597465	597467	.	+	0	transcript_id "Ledus.S6G001100.t1"; gene_id "Ledus.S6G001100"
# This transcript jg10754.t2 is derived from g11785.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10755.t1 is derived from g11786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17502820	17504235	.	-	.	Ledus.S3G223200
Ledus.S3	AUGUSTUS	transcript	17502820	17504235	.	-	.	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	stop_codon	17502817	17502819	.	-	0	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	CDS	17502820	17503282	0.99	-	1	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	exon	17502820	17503282	.	-	.	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	intron	17503283	17503368	.	-	.	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	CDS	17503369	17503528	1	-	2	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	exon	17503369	17503528	.	-	.	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	intron	17503529	17503619	.	-	.	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	CDS	17503620	17503941	1	-	0	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	exon	17503620	17503941	.	-	.	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	intron	17503942	17504019	.	-	.	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	CDS	17504020	17504235	1	-	0	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	exon	17504020	17504235	.	-	.	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
Ledus.S3	AUGUSTUS	start_codon	17504233	17504235	.	-	0	transcript_id "Ledus.S3G223200.t1"; gene_id "Ledus.S3G223200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7179.t1 is derived from g6710.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2014352	2016352	.	+	.	Ledus.C7G024000
Ledus.C7	AUGUSTUS	transcript	2014352	2016352	.	+	.	transcript_id "Ledus.C7G024000.t1"; gene_id "Ledus.C7G024000"
Ledus.C7	AUGUSTUS	start_codon	2014352	2014354	.	+	0	transcript_id "Ledus.C7G024000.t1"; gene_id "Ledus.C7G024000"
Ledus.C7	AUGUSTUS	CDS	2014352	2015579	0.82	+	0	transcript_id "Ledus.C7G024000.t1"; gene_id "Ledus.C7G024000"
Ledus.C7	AUGUSTUS	exon	2014352	2015579	.	+	.	transcript_id "Ledus.C7G024000.t1"; gene_id "Ledus.C7G024000"
Ledus.C7	AUGUSTUS	intron	2015580	2015705	.	+	.	transcript_id "Ledus.C7G024000.t1"; gene_id "Ledus.C7G024000"
Ledus.C7	AUGUSTUS	CDS	2015706	2016352	1	+	2	transcript_id "Ledus.C7G024000.t1"; gene_id "Ledus.C7G024000"
Ledus.C7	AUGUSTUS	exon	2015706	2016352	.	+	.	transcript_id "Ledus.C7G024000.t1"; gene_id "Ledus.C7G024000"
Ledus.C7	AUGUSTUS	stop_codon	2016353	2016355	.	+	0	transcript_id "Ledus.C7G024000.t1"; gene_id "Ledus.C7G024000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11137.t1 is derived from g4755.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2122937	2124657	.	-	.	Ledus.S4G029300
Ledus.S4	AUGUSTUS	transcript	2122937	2124657	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	stop_codon	2122934	2122936	.	-	0	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2122937	2123128	0.93	-	0	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2122937	2123128	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	intron	2123129	2123210	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2123211	2123330	1	-	0	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2123211	2123330	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	intron	2123331	2123414	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2123415	2123515	1	-	2	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2123415	2123515	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	intron	2123516	2123601	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2123602	2123766	1	-	2	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2123602	2123766	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	intron	2123767	2123841	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2123842	2123973	1	-	2	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2123842	2123973	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	intron	2123974	2124181	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2124182	2124350	1	-	0	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2124182	2124350	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	intron	2124351	2124438	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2124439	2124657	1	-	0	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2124439	2124657	.	-	.	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	start_codon	2124655	2124657	.	-	0	transcript_id "Ledus.S4G029300.t1"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	transcript	2122937	2124657	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	stop_codon	2122934	2122936	.	-	0	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2122937	2123128	0.91	-	0	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2122937	2123128	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	intron	2123129	2123210	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2123211	2123330	1	-	0	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2123211	2123330	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	intron	2123331	2123414	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2123415	2123515	1	-	2	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2123415	2123515	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	intron	2123516	2123601	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2123602	2123739	0.87	-	2	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2123602	2123739	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	intron	2123740	2123841	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2123842	2123973	1	-	2	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2123842	2123973	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	intron	2123974	2124181	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2124182	2124350	1	-	0	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2124182	2124350	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	intron	2124351	2124438	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	CDS	2124439	2124657	1	-	0	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	exon	2124439	2124657	.	-	.	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
Ledus.S4	AUGUSTUS	start_codon	2124655	2124657	.	-	0	transcript_id "Ledus.S4G029300.t2"; gene_id "Ledus.S4G029300"
# This transcript jg10121.t2 is derived from g11151.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10122.t1 is derived from g11152.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12943350	12944545	.	-	.	Ledus.S3G159900
Ledus.S3	AUGUSTUS	transcript	12943350	12944545	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	stop_codon	12943347	12943349	.	-	0	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	CDS	12943350	12943535	0.67	-	0	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	exon	12943350	12943535	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	intron	12943536	12943607	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	CDS	12943608	12943706	1	-	0	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	exon	12943608	12943706	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	intron	12943707	12943850	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	CDS	12943851	12943898	0.72	-	0	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	exon	12943851	12943898	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	intron	12943899	12943979	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	CDS	12943980	12944071	1	-	2	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	exon	12943980	12944071	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	intron	12944072	12944200	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	CDS	12944201	12944227	0.94	-	2	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	exon	12944201	12944227	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	intron	12944228	12944304	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	CDS	12944305	12944418	1	-	2	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	exon	12944305	12944418	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	intron	12944419	12944499	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	CDS	12944500	12944545	0.95	-	0	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	exon	12944500	12944545	.	-	.	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
Ledus.S3	AUGUSTUS	start_codon	12944543	12944545	.	-	0	transcript_id "Ledus.S3G159900.t1"; gene_id "Ledus.S3G159900"
# This transcript jg5664.t2 is derived from g3103.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5665.t1 is derived from g3104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25700105	25701443	.	+	.	Ledus.S1G308600
Ledus.S1	AUGUSTUS	transcript	25700105	25701443	.	+	.	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	start_codon	25700105	25700107	.	+	0	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	CDS	25700105	25700396	0.87	+	0	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	exon	25700105	25700396	.	+	.	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	intron	25700397	25700535	.	+	.	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	CDS	25700536	25700613	1	+	2	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	exon	25700536	25700613	.	+	.	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	intron	25700614	25700702	.	+	.	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	CDS	25700703	25700811	0.98	+	2	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	exon	25700703	25700811	.	+	.	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	intron	25700812	25700928	.	+	.	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	CDS	25700929	25701154	1	+	1	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	exon	25700929	25701154	.	+	.	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	intron	25701155	25701236	.	+	.	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	CDS	25701237	25701443	1	+	0	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	exon	25701237	25701443	.	+	.	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
Ledus.S1	AUGUSTUS	stop_codon	25701444	25701446	.	+	0	transcript_id "Ledus.S1G308600.t1"; gene_id "Ledus.S1G308600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8613.t1 is derived from g9643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	658624	660401	.	-	.	Ledus.S3G009000
Ledus.S3	AUGUSTUS	transcript	658624	660401	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	stop_codon	658621	658623	.	-	0	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	CDS	658624	658895	0.9	-	2	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	exon	658624	658895	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	intron	658896	659005	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	CDS	659006	659131	1	-	2	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	exon	659006	659131	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	intron	659132	659268	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	CDS	659269	659415	1	-	2	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	exon	659269	659415	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	intron	659416	659540	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	CDS	659541	659596	1	-	1	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	exon	659541	659596	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	intron	659597	659676	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	CDS	659677	659765	1	-	0	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	exon	659677	659765	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	intron	659766	659849	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	CDS	659850	659940	1	-	1	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	exon	659850	659940	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	intron	659941	660219	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	CDS	660220	660401	1	-	0	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	exon	660220	660401	.	-	.	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
Ledus.S3	AUGUSTUS	start_codon	660399	660401	.	-	0	transcript_id "Ledus.S3G009000.t1"; gene_id "Ledus.S3G009000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10138.t1 is derived from g11168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12996286	12996621	.	+	.	Ledus.S3G161500
Ledus.S3	AUGUSTUS	transcript	12996286	12996621	.	+	.	transcript_id "Ledus.S3G161500.t1"; gene_id "Ledus.S3G161500"
Ledus.S3	AUGUSTUS	start_codon	12996286	12996288	.	+	0	transcript_id "Ledus.S3G161500.t1"; gene_id "Ledus.S3G161500"
Ledus.S3	AUGUSTUS	CDS	12996286	12996621	0.79	+	0	transcript_id "Ledus.S3G161500.t1"; gene_id "Ledus.S3G161500"
Ledus.S3	AUGUSTUS	exon	12996286	12996621	.	+	.	transcript_id "Ledus.S3G161500.t1"; gene_id "Ledus.S3G161500"
Ledus.S3	AUGUSTUS	stop_codon	12996622	12996624	.	+	0	transcript_id "Ledus.S3G161500.t1"; gene_id "Ledus.S3G161500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7979.t1 is derived from g12650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8307636	8312462	.	+	.	Ledus.S5G075700
Ledus.S5	AUGUSTUS	transcript	8307636	8312462	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	start_codon	8307636	8307638	.	+	0	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	CDS	8307636	8308910	0.67	+	0	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	exon	8307636	8308910	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	intron	8308911	8309002	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	CDS	8309003	8309191	0.99	+	0	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	exon	8309003	8309191	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	intron	8309192	8309285	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	CDS	8309286	8310049	1	+	0	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	exon	8309286	8310049	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	intron	8310050	8310178	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	CDS	8310179	8310629	1	+	1	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	exon	8310179	8310629	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	intron	8310630	8310729	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	CDS	8310730	8310825	1	+	0	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	exon	8310730	8310825	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	intron	8310826	8310960	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	CDS	8310961	8311053	1	+	0	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	exon	8310961	8311053	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	intron	8311054	8311173	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	CDS	8311174	8311368	0.98	+	0	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	exon	8311174	8311368	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	intron	8311369	8311624	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	CDS	8311625	8311717	1	+	0	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	exon	8311625	8311717	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	intron	8311718	8311815	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	CDS	8311816	8312028	0.91	+	0	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	exon	8311816	8312028	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	intron	8312029	8312133	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	CDS	8312134	8312223	0.97	+	0	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	exon	8312134	8312223	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	intron	8312224	8312303	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	CDS	8312304	8312462	0.98	+	0	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	exon	8312304	8312462	.	+	.	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
Ledus.S5	AUGUSTUS	stop_codon	8312463	8312465	.	+	0	transcript_id "Ledus.S5G075700.t1"; gene_id "Ledus.S5G075700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9651.t1 is derived from g10681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8780802	8781116	.	+	.	Ledus.S3G112800
Ledus.S3	AUGUSTUS	transcript	8780802	8781116	.	+	.	transcript_id "Ledus.S3G112800.t1"; gene_id "Ledus.S3G112800"
Ledus.S3	AUGUSTUS	start_codon	8780802	8780804	.	+	0	transcript_id "Ledus.S3G112800.t1"; gene_id "Ledus.S3G112800"
Ledus.S3	AUGUSTUS	CDS	8780802	8781116	0.5	+	0	transcript_id "Ledus.S3G112800.t1"; gene_id "Ledus.S3G112800"
Ledus.S3	AUGUSTUS	exon	8780802	8781116	.	+	.	transcript_id "Ledus.S3G112800.t1"; gene_id "Ledus.S3G112800"
Ledus.S3	AUGUSTUS	stop_codon	8781117	8781119	.	+	0	transcript_id "Ledus.S3G112800.t1"; gene_id "Ledus.S3G112800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3534.t1 is derived from g970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9316674	9319513	.	-	.	Ledus.S1G095500
Ledus.S1	AUGUSTUS	transcript	9316674	9319513	.	-	.	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	stop_codon	9316671	9316673	.	-	0	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	CDS	9316674	9318212	0.96	-	0	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	exon	9316674	9318212	.	-	.	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	intron	9318213	9318348	.	-	.	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	CDS	9318349	9318629	1	-	2	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	exon	9318349	9318629	.	-	.	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	intron	9318630	9318725	.	-	.	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	CDS	9318726	9318867	1	-	0	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	exon	9318726	9318867	.	-	.	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	intron	9318868	9319357	.	-	.	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	CDS	9319358	9319513	0.52	-	0	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	exon	9319358	9319513	.	-	.	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
Ledus.S1	AUGUSTUS	start_codon	9319511	9319513	.	-	0	transcript_id "Ledus.S1G095500.t1"; gene_id "Ledus.S1G095500"
# This transcript jg12177.t2 is derived from g5796.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12178.t1 is derived from g5797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10160209	10162064	.	-	.	Ledus.S4G133400
Ledus.S4	AUGUSTUS	transcript	10160209	10162064	.	-	.	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	stop_codon	10160206	10160208	.	-	0	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	CDS	10160209	10160436	1	-	0	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	exon	10160209	10160436	.	-	.	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	intron	10160437	10160566	.	-	.	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	CDS	10160567	10160718	1	-	2	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	exon	10160567	10160718	.	-	.	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	intron	10160719	10160805	.	-	.	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	CDS	10160806	10160931	1	-	2	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	exon	10160806	10160931	.	-	.	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	intron	10160932	10161332	.	-	.	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	CDS	10161333	10161476	1	-	2	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	exon	10161333	10161476	.	-	.	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	intron	10161477	10161970	.	-	.	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	CDS	10161971	10162064	0.57	-	0	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	exon	10161971	10162064	.	-	.	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
Ledus.S4	AUGUSTUS	start_codon	10162062	10162064	.	-	0	transcript_id "Ledus.S4G133400.t1"; gene_id "Ledus.S4G133400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9703.t1 is derived from g10733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9147184	9150683	.	-	.	Ledus.S3G118000
Ledus.S3	AUGUSTUS	transcript	9147184	9150683	.	-	.	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	stop_codon	9147181	9147183	.	-	0	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	CDS	9147184	9148207	1	-	1	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	exon	9147184	9148207	.	-	.	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	intron	9148208	9148283	.	-	.	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	CDS	9148284	9148693	1	-	0	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	exon	9148284	9148693	.	-	.	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	intron	9148694	9148777	.	-	.	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	CDS	9148778	9148863	1	-	2	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	exon	9148778	9148863	.	-	.	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	intron	9148864	9148932	.	-	.	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	CDS	9148933	9149289	1	-	2	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	exon	9148933	9149289	.	-	.	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	intron	9149290	9149791	.	-	.	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	CDS	9149792	9150683	1	-	0	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	exon	9149792	9150683	.	-	.	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
Ledus.S3	AUGUSTUS	start_codon	9150681	9150683	.	-	0	transcript_id "Ledus.S3G118000.t1"; gene_id "Ledus.S3G118000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7432.t1 is derived from g12103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2591136	2594294	.	-	.	Ledus.S5G021000
Ledus.S5	AUGUSTUS	transcript	2591136	2594294	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	stop_codon	2591133	2591135	.	-	0	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	CDS	2591136	2591254	0.99	-	2	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	exon	2591136	2591254	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	intron	2591255	2591356	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	CDS	2591357	2591556	0.97	-	1	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	exon	2591357	2591556	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	intron	2591557	2591662	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	CDS	2591663	2591740	1	-	1	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	exon	2591663	2591740	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	intron	2591741	2591852	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	CDS	2591853	2591921	1	-	1	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	exon	2591853	2591921	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	intron	2591922	2592006	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	CDS	2592007	2592075	1	-	1	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	exon	2592007	2592075	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	intron	2592076	2592220	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	CDS	2592221	2592292	1	-	1	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	exon	2592221	2592292	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	intron	2592293	2592447	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	CDS	2592448	2592592	1	-	2	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	exon	2592448	2592592	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	intron	2592593	2592734	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	CDS	2592735	2593787	1	-	2	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	exon	2592735	2593787	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	intron	2593788	2594200	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	CDS	2594201	2594294	0.92	-	0	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	exon	2594201	2594294	.	-	.	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
Ledus.S5	AUGUSTUS	start_codon	2594292	2594294	.	-	0	transcript_id "Ledus.S5G021000.t1"; gene_id "Ledus.S5G021000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5763.t1 is derived from g3204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26543133	26545025	.	-	.	Ledus.S1G318400
Ledus.S1	AUGUSTUS	transcript	26543133	26545025	.	-	.	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	stop_codon	26543130	26543132	.	-	0	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	CDS	26543133	26543261	0.99	-	0	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	exon	26543133	26543261	.	-	.	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	intron	26543262	26543354	.	-	.	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	CDS	26543355	26543441	1	-	0	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	exon	26543355	26543441	.	-	.	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	intron	26543442	26543532	.	-	.	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	CDS	26543533	26543793	1	-	0	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	exon	26543533	26543793	.	-	.	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	intron	26543794	26543870	.	-	.	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	CDS	26543871	26544276	1	-	1	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	exon	26543871	26544276	.	-	.	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	intron	26544277	26544444	.	-	.	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	CDS	26544445	26545025	1	-	0	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	exon	26544445	26545025	.	-	.	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
Ledus.S1	AUGUSTUS	start_codon	26545023	26545025	.	-	0	transcript_id "Ledus.S1G318400.t1"; gene_id "Ledus.S1G318400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11932.t1 is derived from g5551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7860760	7863019	.	+	.	Ledus.S4G108800
Ledus.S4	AUGUSTUS	transcript	7860760	7863019	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	start_codon	7860760	7860762	.	+	0	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	CDS	7860760	7860791	0.62	+	0	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	exon	7860760	7860791	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	intron	7860792	7860887	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	CDS	7860888	7861111	0.99	+	1	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	exon	7860888	7861111	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	intron	7861112	7861283	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	CDS	7861284	7861389	1	+	2	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	exon	7861284	7861389	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	intron	7861390	7861530	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	CDS	7861531	7861580	1	+	1	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	exon	7861531	7861580	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	intron	7861581	7861734	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	CDS	7861735	7861802	0.99	+	2	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	exon	7861735	7861802	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	intron	7861803	7861928	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	CDS	7861929	7862027	0.91	+	0	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	exon	7861929	7862027	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	intron	7862028	7862146	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	CDS	7862147	7862206	1	+	0	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	exon	7862147	7862206	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	intron	7862207	7862387	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	CDS	7862388	7862447	1	+	0	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	exon	7862388	7862447	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	intron	7862448	7862564	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	CDS	7862565	7862619	0.94	+	0	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	exon	7862565	7862619	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	intron	7862620	7862761	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	CDS	7862762	7862811	0.99	+	2	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	exon	7862762	7862811	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	intron	7862812	7862923	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	CDS	7862924	7863019	0.99	+	0	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	exon	7862924	7863019	.	+	.	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
Ledus.S4	AUGUSTUS	stop_codon	7863020	7863022	.	+	0	transcript_id "Ledus.S4G108800.t1"; gene_id "Ledus.S4G108800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11127.t1 is derived from g4745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2083104	2083938	.	-	.	Ledus.S4G028300
Ledus.S4	AUGUSTUS	transcript	2083104	2083938	.	-	.	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	stop_codon	2083101	2083103	.	-	0	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	CDS	2083104	2083179	0.7	-	1	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	exon	2083104	2083179	.	-	.	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	intron	2083180	2083310	.	-	.	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	CDS	2083311	2083379	0.81	-	1	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	exon	2083311	2083379	.	-	.	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	intron	2083380	2083651	.	-	.	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	CDS	2083652	2083735	0.8	-	1	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	exon	2083652	2083735	.	-	.	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	intron	2083736	2083807	.	-	.	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	CDS	2083808	2083938	0.64	-	0	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	exon	2083808	2083938	.	-	.	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
Ledus.S4	AUGUSTUS	start_codon	2083936	2083938	.	-	0	transcript_id "Ledus.S4G028300.t1"; gene_id "Ledus.S4G028300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4575.t1 is derived from g2012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17851917	17852746	.	+	.	Ledus.S1G199600
Ledus.S1	AUGUSTUS	transcript	17851917	17852746	.	+	.	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	start_codon	17851917	17851919	.	+	0	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	CDS	17851917	17851977	0.51	+	0	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	exon	17851917	17851977	.	+	.	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	intron	17851978	17852374	.	+	.	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	CDS	17852375	17852446	0.86	+	2	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	exon	17852375	17852446	.	+	.	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	intron	17852447	17852555	.	+	.	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	CDS	17852556	17852620	0.84	+	2	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	exon	17852556	17852620	.	+	.	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	intron	17852621	17852719	.	+	.	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	CDS	17852720	17852746	0.84	+	0	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	exon	17852720	17852746	.	+	.	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
Ledus.S1	AUGUSTUS	stop_codon	17852747	17852749	.	+	0	transcript_id "Ledus.S1G199600.t1"; gene_id "Ledus.S1G199600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13156.t1 is derived from g6966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7597062	7597394	.	+	.	Ledus.S6G021800
Ledus.S6	AUGUSTUS	transcript	7597062	7597394	.	+	.	transcript_id "Ledus.S6G021800.t1"; gene_id "Ledus.S6G021800"
Ledus.S6	AUGUSTUS	start_codon	7597062	7597064	.	+	0	transcript_id "Ledus.S6G021800.t1"; gene_id "Ledus.S6G021800"
Ledus.S6	AUGUSTUS	CDS	7597062	7597394	0.38	+	0	transcript_id "Ledus.S6G021800.t1"; gene_id "Ledus.S6G021800"
Ledus.S6	AUGUSTUS	exon	7597062	7597394	.	+	.	transcript_id "Ledus.S6G021800.t1"; gene_id "Ledus.S6G021800"
Ledus.S6	AUGUSTUS	stop_codon	7597395	7597397	.	+	0	transcript_id "Ledus.S6G021800.t1"; gene_id "Ledus.S6G021800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10366.t1 is derived from g11396.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14449362	14455003	.	-	.	Ledus.S3G184300
Ledus.S3	AUGUSTUS	transcript	14449362	14455003	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	stop_codon	14449359	14449361	.	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14449362	14449433	0.89	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14449362	14449433	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14449434	14449518	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14449519	14449761	1	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14449519	14449761	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14449762	14449877	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14449878	14449976	1	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14449878	14449976	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14449977	14450063	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14450064	14450543	1	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14450064	14450543	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14450544	14450646	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14450647	14450745	1	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14450647	14450745	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14450746	14450861	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14450862	14450983	0.78	-	2	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14450862	14450983	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14450984	14451113	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14451114	14451232	0.98	-	1	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14451114	14451232	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14451233	14451423	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14451424	14451491	1	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14451424	14451491	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14451492	14451571	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14451572	14451757	1	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14451572	14451757	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14451758	14451922	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14451923	14451998	1	-	1	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14451923	14451998	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14451999	14452178	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14452179	14452258	1	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14452179	14452258	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14452259	14452365	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14452366	14452422	1	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14452366	14452422	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14452423	14452560	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14452561	14452848	1	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14452561	14452848	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14452849	14452963	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14452964	14453125	0.93	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14452964	14453125	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14453126	14453237	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14453238	14453423	1	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14453238	14453423	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14453424	14453503	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14453504	14453757	1	-	2	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14453504	14453757	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14453758	14453875	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14453876	14453980	0.99	-	2	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14453876	14453980	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14453981	14454272	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14454273	14454606	0.64	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14454273	14454606	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	intron	14454607	14454691	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	CDS	14454692	14455003	0.3	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	exon	14454692	14455003	.	-	.	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
Ledus.S3	AUGUSTUS	start_codon	14455001	14455003	.	-	0	transcript_id "Ledus.S3G184300.t1"; gene_id "Ledus.S3G184300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4522.t1 is derived from g1959.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17501890	17506401	.	-	.	Ledus.S1G194300
Ledus.S1	AUGUSTUS	transcript	17501890	17506401	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	stop_codon	17501887	17501889	.	-	0	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17501890	17501943	0.74	-	0	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17501890	17501943	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17501944	17502057	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17502058	17502109	0.76	-	1	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17502058	17502109	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17502110	17502217	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17502218	17502279	0.91	-	0	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17502218	17502279	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17502280	17502467	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17502468	17502555	1	-	1	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17502468	17502555	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17502556	17502752	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17502753	17502821	1	-	1	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17502753	17502821	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17502822	17502916	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17502917	17502974	1	-	2	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17502917	17502974	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17502975	17503111	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17503112	17503213	0.91	-	2	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17503112	17503213	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17503214	17503319	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17503320	17503430	1	-	2	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17503320	17503430	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17503431	17503622	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17503623	17503980	1	-	0	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17503623	17503980	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17503981	17504070	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17504071	17504157	1	-	0	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17504071	17504157	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17504158	17504587	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17504588	17504730	1	-	2	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17504588	17504730	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17504731	17505343	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17505344	17505583	1	-	2	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17505344	17505583	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17505584	17505674	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17505675	17505770	1	-	2	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17505675	17505770	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17505771	17505954	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17505955	17506068	1	-	2	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17505955	17506068	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17506069	17506271	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17506272	17506401	0.42	-	0	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17506272	17506401	.	-	.	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	start_codon	17506399	17506401	.	-	0	transcript_id "Ledus.S1G194300.t1"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	transcript	17501890	17506401	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	stop_codon	17501887	17501889	.	-	0	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17501890	17501943	0.69	-	0	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17501890	17501943	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17501944	17502057	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17502058	17502109	0.7	-	1	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17502058	17502109	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17502110	17502217	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17502218	17502279	0.87	-	0	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17502218	17502279	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17502280	17502467	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17502468	17502555	1	-	1	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17502468	17502555	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17502556	17502752	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17502753	17502821	1	-	1	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17502753	17502821	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17502822	17502916	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17502917	17502974	1	-	2	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17502917	17502974	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17502975	17503111	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17503112	17503222	1	-	2	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17503112	17503222	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17503223	17503319	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17503320	17503430	1	-	2	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17503320	17503430	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17503431	17503622	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17503623	17503980	1	-	0	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17503623	17503980	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17503981	17504070	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17504071	17504157	1	-	0	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17504071	17504157	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17504158	17504587	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17504588	17504730	1	-	2	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17504588	17504730	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17504731	17505343	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17505344	17505583	0.99	-	2	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17505344	17505583	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17505584	17505674	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17505675	17505770	1	-	2	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17505675	17505770	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17505771	17505954	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17505955	17506068	1	-	2	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17505955	17506068	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	intron	17506069	17506271	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	CDS	17506272	17506401	0.43	-	0	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	exon	17506272	17506401	.	-	.	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
Ledus.S1	AUGUSTUS	start_codon	17506399	17506401	.	-	0	transcript_id "Ledus.S1G194300.t2"; gene_id "Ledus.S1G194300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1416.t1 is derived from g8277.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9959219	9959744	.	-	.	Ledus.S2G129800
Ledus.S2	AUGUSTUS	transcript	9959219	9959744	.	-	.	transcript_id "Ledus.S2G129800.t1"; gene_id "Ledus.S2G129800"
Ledus.S2	AUGUSTUS	stop_codon	9959216	9959218	.	-	0	transcript_id "Ledus.S2G129800.t1"; gene_id "Ledus.S2G129800"
Ledus.S2	AUGUSTUS	CDS	9959219	9959409	0.32	-	2	transcript_id "Ledus.S2G129800.t1"; gene_id "Ledus.S2G129800"
Ledus.S2	AUGUSTUS	exon	9959219	9959409	.	-	.	transcript_id "Ledus.S2G129800.t1"; gene_id "Ledus.S2G129800"
Ledus.S2	AUGUSTUS	intron	9959410	9959539	.	-	.	transcript_id "Ledus.S2G129800.t1"; gene_id "Ledus.S2G129800"
Ledus.S2	AUGUSTUS	CDS	9959540	9959744	0.28	-	0	transcript_id "Ledus.S2G129800.t1"; gene_id "Ledus.S2G129800"
Ledus.S2	AUGUSTUS	exon	9959540	9959744	.	-	.	transcript_id "Ledus.S2G129800.t1"; gene_id "Ledus.S2G129800"
Ledus.S2	AUGUSTUS	start_codon	9959742	9959744	.	-	0	transcript_id "Ledus.S2G129800.t1"; gene_id "Ledus.S2G129800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg551.t1 is derived from g7412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3182113	3183875	.	-	.	Ledus.S2G043300
Ledus.S2	AUGUSTUS	transcript	3182113	3183875	.	-	.	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	stop_codon	3182110	3182112	.	-	0	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	CDS	3182113	3182231	0.99	-	2	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	exon	3182113	3182231	.	-	.	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	intron	3182232	3182410	.	-	.	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	CDS	3182411	3183054	1	-	1	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	exon	3182411	3183054	.	-	.	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	intron	3183055	3183499	.	-	.	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	CDS	3183500	3183579	0.96	-	0	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	exon	3183500	3183579	.	-	.	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	intron	3183580	3183860	.	-	.	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	CDS	3183861	3183875	0.52	-	0	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	exon	3183861	3183875	.	-	.	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
Ledus.S2	AUGUSTUS	start_codon	3183873	3183875	.	-	0	transcript_id "Ledus.S2G043300.t1"; gene_id "Ledus.S2G043300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11858.t1 is derived from g5477.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7398349	7399512	.	+	.	Ledus.S4G101400
Ledus.S4	AUGUSTUS	transcript	7398349	7399512	.	+	.	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	start_codon	7398349	7398351	.	+	0	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	CDS	7398349	7398442	1	+	0	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	exon	7398349	7398442	.	+	.	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	intron	7398443	7398620	.	+	.	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	CDS	7398621	7398679	1	+	2	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	exon	7398621	7398679	.	+	.	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	intron	7398680	7398763	.	+	.	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	CDS	7398764	7398949	1	+	0	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	exon	7398764	7398949	.	+	.	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	intron	7398950	7399065	.	+	.	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	CDS	7399066	7399236	1	+	0	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	exon	7399066	7399236	.	+	.	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	intron	7399237	7399359	.	+	.	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	CDS	7399360	7399512	0.95	+	0	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	exon	7399360	7399512	.	+	.	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
Ledus.S4	AUGUSTUS	stop_codon	7399513	7399515	.	+	0	transcript_id "Ledus.S4G101400.t1"; gene_id "Ledus.S4G101400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1890.t1 is derived from g8753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13196060	13196949	.	-	.	Ledus.S2G177200
Ledus.S2	AUGUSTUS	transcript	13196060	13196949	.	-	.	transcript_id "Ledus.S2G177200.t1"; gene_id "Ledus.S2G177200"
Ledus.S2	AUGUSTUS	stop_codon	13196057	13196059	.	-	0	transcript_id "Ledus.S2G177200.t1"; gene_id "Ledus.S2G177200"
Ledus.S2	AUGUSTUS	CDS	13196060	13196302	0.99	-	0	transcript_id "Ledus.S2G177200.t1"; gene_id "Ledus.S2G177200"
Ledus.S2	AUGUSTUS	exon	13196060	13196302	.	-	.	transcript_id "Ledus.S2G177200.t1"; gene_id "Ledus.S2G177200"
Ledus.S2	AUGUSTUS	intron	13196303	13196517	.	-	.	transcript_id "Ledus.S2G177200.t1"; gene_id "Ledus.S2G177200"
Ledus.S2	AUGUSTUS	CDS	13196518	13196949	0.58	-	0	transcript_id "Ledus.S2G177200.t1"; gene_id "Ledus.S2G177200"
Ledus.S2	AUGUSTUS	exon	13196518	13196949	.	-	.	transcript_id "Ledus.S2G177200.t1"; gene_id "Ledus.S2G177200"
Ledus.S2	AUGUSTUS	start_codon	13196947	13196949	.	-	0	transcript_id "Ledus.S2G177200.t1"; gene_id "Ledus.S2G177200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10901.t1 is derived from g4519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	381353	382639	.	+	.	Ledus.S4G005700
Ledus.S4	AUGUSTUS	transcript	381353	382639	.	+	.	transcript_id "Ledus.S4G005700.t1"; gene_id "Ledus.S4G005700"
Ledus.S4	AUGUSTUS	start_codon	381353	381355	.	+	0	transcript_id "Ledus.S4G005700.t1"; gene_id "Ledus.S4G005700"
Ledus.S4	AUGUSTUS	CDS	381353	382639	0.77	+	0	transcript_id "Ledus.S4G005700.t1"; gene_id "Ledus.S4G005700"
Ledus.S4	AUGUSTUS	exon	381353	382639	.	+	.	transcript_id "Ledus.S4G005700.t1"; gene_id "Ledus.S4G005700"
Ledus.S4	AUGUSTUS	stop_codon	382640	382642	.	+	0	transcript_id "Ledus.S4G005700.t1"; gene_id "Ledus.S4G005700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11365.t1 is derived from g4983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3828322	3830368	.	-	.	Ledus.S4G052100
Ledus.S4	AUGUSTUS	transcript	3828322	3830368	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	stop_codon	3828319	3828321	.	-	0	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	CDS	3828322	3828516	0.99	-	0	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	exon	3828322	3828516	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	intron	3828517	3828600	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	CDS	3828601	3828858	1	-	0	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	exon	3828601	3828858	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	intron	3828859	3828947	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	CDS	3828948	3829155	0.95	-	1	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	exon	3828948	3829155	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	intron	3829156	3829258	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	CDS	3829259	3829356	0.94	-	0	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	exon	3829259	3829356	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	intron	3829357	3829434	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	CDS	3829435	3829618	1	-	1	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	exon	3829435	3829618	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	intron	3829619	3829701	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	CDS	3829702	3829814	1	-	0	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	exon	3829702	3829814	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	intron	3829815	3829892	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	CDS	3829893	3830078	1	-	0	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	exon	3829893	3830078	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	intron	3830079	3830149	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	CDS	3830150	3830368	0.76	-	0	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	exon	3830150	3830368	.	-	.	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
Ledus.S4	AUGUSTUS	start_codon	3830366	3830368	.	-	0	transcript_id "Ledus.S4G052100.t1"; gene_id "Ledus.S4G052100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1687.t1 is derived from g8548.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11844851	11850884	.	-	.	Ledus.S2G156900
Ledus.S2	AUGUSTUS	transcript	11844851	11850884	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	stop_codon	11844848	11844850	.	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11844851	11844970	0.94	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11844851	11844970	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11844971	11845049	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11845050	11845216	1	-	2	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11845050	11845216	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11845217	11845305	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11845306	11845378	1	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11845306	11845378	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11845379	11845523	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11845524	11845625	1	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11845524	11845625	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11845626	11845707	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11845708	11845812	1	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11845708	11845812	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11845813	11845903	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11845904	11846051	1	-	1	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11845904	11846051	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11846052	11846160	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11846161	11846273	1	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11846161	11846273	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11846274	11846405	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11846406	11846456	1	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11846406	11846456	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11846457	11846573	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11846574	11846711	1	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11846574	11846711	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11846712	11846864	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11846865	11846978	1	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11846865	11846978	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11846979	11847141	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11847142	11847253	1	-	1	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11847142	11847253	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11847254	11847384	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11847385	11847474	1	-	1	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11847385	11847474	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11847475	11847657	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11847658	11847878	1	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11847658	11847878	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11847879	11847967	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11847968	11848084	1	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11847968	11848084	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11848085	11848167	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11848168	11848285	1	-	1	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11848168	11848285	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11848286	11848415	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11848416	11848564	0.99	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11848416	11848564	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11848565	11848687	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11848688	11848771	1	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11848688	11848771	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11848772	11848876	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11848877	11848952	0.86	-	1	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11848877	11848952	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11848953	11849092	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11849093	11849160	1	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11849093	11849160	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11849161	11849252	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11849253	11849305	0.93	-	2	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11849253	11849305	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11849306	11849419	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11849420	11849473	0.85	-	2	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11849420	11849473	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11849474	11849618	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11849619	11849710	1	-	1	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11849619	11849710	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11849711	11849800	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11849801	11849895	0.95	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11849801	11849895	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11849896	11850006	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11850007	11850090	1	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11850007	11850090	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11850091	11850214	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11850215	11850341	1	-	1	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11850215	11850341	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11850342	11850429	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11850430	11850511	1	-	2	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11850430	11850511	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	intron	11850512	11850583	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	CDS	11850584	11850884	0.84	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	exon	11850584	11850884	.	-	.	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
Ledus.S2	AUGUSTUS	start_codon	11850882	11850884	.	-	0	transcript_id "Ledus.S2G156900.t1"; gene_id "Ledus.S2G156900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3198.t1 is derived from g633.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6769975	6770433	.	+	.	Ledus.S1G061900
Ledus.S1	AUGUSTUS	transcript	6769975	6770433	.	+	.	transcript_id "Ledus.S1G061900.t1"; gene_id "Ledus.S1G061900"
Ledus.S1	AUGUSTUS	start_codon	6769975	6769977	.	+	0	transcript_id "Ledus.S1G061900.t1"; gene_id "Ledus.S1G061900"
Ledus.S1	AUGUSTUS	CDS	6769975	6770433	0.69	+	0	transcript_id "Ledus.S1G061900.t1"; gene_id "Ledus.S1G061900"
Ledus.S1	AUGUSTUS	exon	6769975	6770433	.	+	.	transcript_id "Ledus.S1G061900.t1"; gene_id "Ledus.S1G061900"
Ledus.S1	AUGUSTUS	stop_codon	6770434	6770436	.	+	0	transcript_id "Ledus.S1G061900.t1"; gene_id "Ledus.S1G061900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5686.t1 is derived from g3125.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25884858	25885211	.	+	.	Ledus.S1G310700
Ledus.S1	AUGUSTUS	transcript	25884858	25885211	.	+	.	transcript_id "Ledus.S1G310700.t1"; gene_id "Ledus.S1G310700"
Ledus.S1	AUGUSTUS	start_codon	25884858	25884860	.	+	0	transcript_id "Ledus.S1G310700.t1"; gene_id "Ledus.S1G310700"
Ledus.S1	AUGUSTUS	CDS	25884858	25885211	0.94	+	0	transcript_id "Ledus.S1G310700.t1"; gene_id "Ledus.S1G310700"
Ledus.S1	AUGUSTUS	exon	25884858	25885211	.	+	.	transcript_id "Ledus.S1G310700.t1"; gene_id "Ledus.S1G310700"
Ledus.S1	AUGUSTUS	stop_codon	25885212	25885214	.	+	0	transcript_id "Ledus.S1G310700.t1"; gene_id "Ledus.S1G310700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5499.t1 is derived from g2938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24639586	24641060	.	-	.	Ledus.S1G292000
Ledus.S1	AUGUSTUS	transcript	24639586	24641060	.	-	.	transcript_id "Ledus.S1G292000.t1"; gene_id "Ledus.S1G292000"
Ledus.S1	AUGUSTUS	stop_codon	24639583	24639585	.	-	0	transcript_id "Ledus.S1G292000.t1"; gene_id "Ledus.S1G292000"
Ledus.S1	AUGUSTUS	CDS	24639586	24639727	0.99	-	1	transcript_id "Ledus.S1G292000.t1"; gene_id "Ledus.S1G292000"
Ledus.S1	AUGUSTUS	exon	24639586	24639727	.	-	.	transcript_id "Ledus.S1G292000.t1"; gene_id "Ledus.S1G292000"
Ledus.S1	AUGUSTUS	intron	24639728	24639833	.	-	.	transcript_id "Ledus.S1G292000.t1"; gene_id "Ledus.S1G292000"
Ledus.S1	AUGUSTUS	CDS	24639834	24640171	0.99	-	0	transcript_id "Ledus.S1G292000.t1"; gene_id "Ledus.S1G292000"
Ledus.S1	AUGUSTUS	exon	24639834	24640171	.	-	.	transcript_id "Ledus.S1G292000.t1"; gene_id "Ledus.S1G292000"
Ledus.S1	AUGUSTUS	intron	24640172	24640316	.	-	.	transcript_id "Ledus.S1G292000.t1"; gene_id "Ledus.S1G292000"
Ledus.S1	AUGUSTUS	CDS	24640317	24641060	0.97	-	0	transcript_id "Ledus.S1G292000.t1"; gene_id "Ledus.S1G292000"
Ledus.S1	AUGUSTUS	exon	24640317	24641060	.	-	.	transcript_id "Ledus.S1G292000.t1"; gene_id "Ledus.S1G292000"
Ledus.S1	AUGUSTUS	start_codon	24641058	24641060	.	-	0	transcript_id "Ledus.S1G292000.t1"; gene_id "Ledus.S1G292000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1960.t1 is derived from g8823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13828057	13832787	.	-	.	Ledus.S2G184200
Ledus.S2	AUGUSTUS	transcript	13828057	13832787	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	stop_codon	13828054	13828056	.	-	0	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13828057	13828205	1	-	2	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13828057	13828205	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13828206	13828305	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13828306	13828372	1	-	0	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13828306	13828372	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13828373	13828464	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13828465	13828551	1	-	0	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13828465	13828551	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13828552	13828715	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13828716	13828809	1	-	1	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13828716	13828809	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13828810	13828929	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13828930	13829002	1	-	2	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13828930	13829002	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13829003	13829176	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13829177	13829285	1	-	0	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13829177	13829285	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13829286	13829461	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13829462	13829558	1	-	1	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13829462	13829558	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13829559	13829740	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13829741	13829839	1	-	1	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13829741	13829839	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13829840	13829929	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13829930	13830000	1	-	0	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13829930	13830000	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13830001	13830093	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13830094	13830171	1	-	0	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13830094	13830171	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13830172	13830251	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13830252	13830338	1	-	0	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13830252	13830338	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13830339	13830429	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13830430	13830536	1	-	2	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13830430	13830536	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13830537	13830616	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13830617	13830697	1	-	2	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13830617	13830697	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13830698	13830839	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13830840	13830873	1	-	0	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13830840	13830873	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13830874	13830957	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13830958	13831014	1	-	0	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13830958	13831014	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13831015	13831271	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13831272	13831329	1	-	1	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13831272	13831329	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13831330	13831427	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13831428	13831519	1	-	0	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13831428	13831519	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13831520	13831667	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13831668	13831795	1	-	2	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13831668	13831795	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13831796	13831932	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13831933	13832010	1	-	2	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13831933	13832010	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	intron	13832011	13832537	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	CDS	13832538	13832787	0.6	-	0	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	exon	13832538	13832787	.	-	.	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
Ledus.S2	AUGUSTUS	start_codon	13832785	13832787	.	-	0	transcript_id "Ledus.S2G184200.t1"; gene_id "Ledus.S2G184200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12589.t1 is derived from g6211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13019461	13021515	.	+	.	Ledus.S4G174500
Ledus.S4	AUGUSTUS	transcript	13019461	13021515	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	start_codon	13019461	13019463	.	+	0	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	CDS	13019461	13019536	0.47	+	0	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	exon	13019461	13019536	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	intron	13019537	13019615	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	CDS	13019616	13019654	0.97	+	2	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	exon	13019616	13019654	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	intron	13019655	13019833	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	CDS	13019834	13020018	0.64	+	2	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	exon	13019834	13020018	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	intron	13020019	13020228	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	CDS	13020229	13020650	1	+	0	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	exon	13020229	13020650	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	intron	13020651	13020811	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	CDS	13020812	13020929	1	+	1	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	exon	13020812	13020929	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	intron	13020930	13021099	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	CDS	13021100	13021341	1	+	0	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	exon	13021100	13021341	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	intron	13021342	13021436	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	CDS	13021437	13021515	0.98	+	1	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	exon	13021437	13021515	.	+	.	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
Ledus.S4	AUGUSTUS	stop_codon	13021516	13021518	.	+	0	transcript_id "Ledus.S4G174500.t1"; gene_id "Ledus.S4G174500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2752.t1 is derived from g186.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3113809	3114967	.	-	.	Ledus.S1G017300
Ledus.S1	AUGUSTUS	transcript	3113809	3114967	.	-	.	transcript_id "Ledus.S1G017300.t1"; gene_id "Ledus.S1G017300"
Ledus.S1	AUGUSTUS	stop_codon	3113806	3113808	.	-	0	transcript_id "Ledus.S1G017300.t1"; gene_id "Ledus.S1G017300"
Ledus.S1	AUGUSTUS	CDS	3113809	3114242	1	-	2	transcript_id "Ledus.S1G017300.t1"; gene_id "Ledus.S1G017300"
Ledus.S1	AUGUSTUS	exon	3113809	3114242	.	-	.	transcript_id "Ledus.S1G017300.t1"; gene_id "Ledus.S1G017300"
Ledus.S1	AUGUSTUS	intron	3114243	3114330	.	-	.	transcript_id "Ledus.S1G017300.t1"; gene_id "Ledus.S1G017300"
Ledus.S1	AUGUSTUS	CDS	3114331	3114549	0.93	-	2	transcript_id "Ledus.S1G017300.t1"; gene_id "Ledus.S1G017300"
Ledus.S1	AUGUSTUS	exon	3114331	3114549	.	-	.	transcript_id "Ledus.S1G017300.t1"; gene_id "Ledus.S1G017300"
Ledus.S1	AUGUSTUS	intron	3114550	3114711	.	-	.	transcript_id "Ledus.S1G017300.t1"; gene_id "Ledus.S1G017300"
Ledus.S1	AUGUSTUS	CDS	3114712	3114967	0.23	-	0	transcript_id "Ledus.S1G017300.t1"; gene_id "Ledus.S1G017300"
Ledus.S1	AUGUSTUS	exon	3114712	3114967	.	-	.	transcript_id "Ledus.S1G017300.t1"; gene_id "Ledus.S1G017300"
Ledus.S1	AUGUSTUS	start_codon	3114965	3114967	.	-	0	transcript_id "Ledus.S1G017300.t1"; gene_id "Ledus.S1G017300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4799.t1 is derived from g2237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19822462	19824424	.	-	.	Ledus.S1G222000
Ledus.S1	AUGUSTUS	transcript	19822462	19824424	.	-	.	transcript_id "Ledus.S1G222000.t1"; gene_id "Ledus.S1G222000"
Ledus.S1	AUGUSTUS	stop_codon	19822459	19822461	.	-	0	transcript_id "Ledus.S1G222000.t1"; gene_id "Ledus.S1G222000"
Ledus.S1	AUGUSTUS	CDS	19822462	19823205	0.99	-	0	transcript_id "Ledus.S1G222000.t1"; gene_id "Ledus.S1G222000"
Ledus.S1	AUGUSTUS	exon	19822462	19823205	.	-	.	transcript_id "Ledus.S1G222000.t1"; gene_id "Ledus.S1G222000"
Ledus.S1	AUGUSTUS	intron	19823206	19823317	.	-	.	transcript_id "Ledus.S1G222000.t1"; gene_id "Ledus.S1G222000"
Ledus.S1	AUGUSTUS	CDS	19823318	19823407	0.81	-	0	transcript_id "Ledus.S1G222000.t1"; gene_id "Ledus.S1G222000"
Ledus.S1	AUGUSTUS	exon	19823318	19823407	.	-	.	transcript_id "Ledus.S1G222000.t1"; gene_id "Ledus.S1G222000"
Ledus.S1	AUGUSTUS	intron	19823408	19823602	.	-	.	transcript_id "Ledus.S1G222000.t1"; gene_id "Ledus.S1G222000"
Ledus.S1	AUGUSTUS	CDS	19823603	19824424	1	-	0	transcript_id "Ledus.S1G222000.t1"; gene_id "Ledus.S1G222000"
Ledus.S1	AUGUSTUS	exon	19823603	19824424	.	-	.	transcript_id "Ledus.S1G222000.t1"; gene_id "Ledus.S1G222000"
Ledus.S1	AUGUSTUS	start_codon	19824422	19824424	.	-	0	transcript_id "Ledus.S1G222000.t1"; gene_id "Ledus.S1G222000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8951.t1 is derived from g9981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3391481	3396668	.	-	.	Ledus.S3G042800
Ledus.S3	AUGUSTUS	transcript	3391481	3396668	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	stop_codon	3391478	3391480	.	-	0	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3391481	3391544	0.87	-	1	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3391481	3391544	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3391545	3391645	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3391646	3391729	0.73	-	1	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3391646	3391729	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3391730	3391839	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3391840	3391916	0.94	-	0	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3391840	3391916	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3391917	3392021	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3392022	3392117	0.73	-	0	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3392022	3392117	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3392118	3392205	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3392206	3392358	1	-	0	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3392206	3392358	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3392359	3392508	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3392509	3392681	1	-	2	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3392509	3392681	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3392682	3392769	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3392770	3392827	1	-	0	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3392770	3392827	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3392828	3392956	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3392957	3393124	1	-	0	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3392957	3393124	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3393125	3393342	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3393343	3393465	1	-	0	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3393343	3393465	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3393466	3393601	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3393602	3393704	1	-	1	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3393602	3393704	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3393705	3393851	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3393852	3394066	1	-	0	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3393852	3394066	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3394067	3394164	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3394165	3394326	1	-	0	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3394165	3394326	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3394327	3394413	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3394414	3394448	0.92	-	2	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3394414	3394448	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3394449	3394517	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3394518	3394581	0.9	-	0	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3394518	3394581	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3394582	3394696	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3394697	3394832	0.99	-	1	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3394697	3394832	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3394833	3394990	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3394991	3395911	0.98	-	1	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3394991	3395911	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3395912	3395987	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3395988	3396080	0.99	-	1	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3395988	3396080	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3396081	3396356	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3396357	3396429	0.76	-	2	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3396357	3396429	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	intron	3396430	3396604	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	CDS	3396605	3396668	0.72	-	0	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	exon	3396605	3396668	.	-	.	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
Ledus.S3	AUGUSTUS	start_codon	3396666	3396668	.	-	0	transcript_id "Ledus.S3G042800.t1"; gene_id "Ledus.S3G042800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4519.t1 is derived from g1956.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17498633	17499104	.	-	.	Ledus.S1G194000
Ledus.S1	AUGUSTUS	transcript	17498633	17499104	.	-	.	transcript_id "Ledus.S1G194000.t1"; gene_id "Ledus.S1G194000"
Ledus.S1	AUGUSTUS	stop_codon	17498630	17498632	.	-	0	transcript_id "Ledus.S1G194000.t1"; gene_id "Ledus.S1G194000"
Ledus.S1	AUGUSTUS	CDS	17498633	17498914	1	-	0	transcript_id "Ledus.S1G194000.t1"; gene_id "Ledus.S1G194000"
Ledus.S1	AUGUSTUS	exon	17498633	17498914	.	-	.	transcript_id "Ledus.S1G194000.t1"; gene_id "Ledus.S1G194000"
Ledus.S1	AUGUSTUS	intron	17498915	17499011	.	-	.	transcript_id "Ledus.S1G194000.t1"; gene_id "Ledus.S1G194000"
Ledus.S1	AUGUSTUS	CDS	17499012	17499104	0.79	-	0	transcript_id "Ledus.S1G194000.t1"; gene_id "Ledus.S1G194000"
Ledus.S1	AUGUSTUS	exon	17499012	17499104	.	-	.	transcript_id "Ledus.S1G194000.t1"; gene_id "Ledus.S1G194000"
Ledus.S1	AUGUSTUS	start_codon	17499102	17499104	.	-	0	transcript_id "Ledus.S1G194000.t1"; gene_id "Ledus.S1G194000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8046.t1 is derived from g12717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8780385	8781518	.	+	.	Ledus.S5G082400
Ledus.S5	AUGUSTUS	transcript	8780385	8781518	.	+	.	transcript_id "Ledus.S5G082400.t1"; gene_id "Ledus.S5G082400"
Ledus.S5	AUGUSTUS	start_codon	8780385	8780387	.	+	0	transcript_id "Ledus.S5G082400.t1"; gene_id "Ledus.S5G082400"
Ledus.S5	AUGUSTUS	CDS	8780385	8781518	0.88	+	0	transcript_id "Ledus.S5G082400.t1"; gene_id "Ledus.S5G082400"
Ledus.S5	AUGUSTUS	exon	8780385	8781518	.	+	.	transcript_id "Ledus.S5G082400.t1"; gene_id "Ledus.S5G082400"
Ledus.S5	AUGUSTUS	stop_codon	8781519	8781521	.	+	0	transcript_id "Ledus.S5G082400.t1"; gene_id "Ledus.S5G082400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10212.t1 is derived from g11242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13617992	13618887	.	-	.	Ledus.S3G168900
Ledus.S3	AUGUSTUS	transcript	13617992	13618887	.	-	.	transcript_id "Ledus.S3G168900.t1"; gene_id "Ledus.S3G168900"
Ledus.S3	AUGUSTUS	stop_codon	13617989	13617991	.	-	0	transcript_id "Ledus.S3G168900.t1"; gene_id "Ledus.S3G168900"
Ledus.S3	AUGUSTUS	CDS	13617992	13618243	1	-	0	transcript_id "Ledus.S3G168900.t1"; gene_id "Ledus.S3G168900"
Ledus.S3	AUGUSTUS	exon	13617992	13618243	.	-	.	transcript_id "Ledus.S3G168900.t1"; gene_id "Ledus.S3G168900"
Ledus.S3	AUGUSTUS	intron	13618244	13618338	.	-	.	transcript_id "Ledus.S3G168900.t1"; gene_id "Ledus.S3G168900"
Ledus.S3	AUGUSTUS	CDS	13618339	13618887	0.85	-	0	transcript_id "Ledus.S3G168900.t1"; gene_id "Ledus.S3G168900"
Ledus.S3	AUGUSTUS	exon	13618339	13618887	.	-	.	transcript_id "Ledus.S3G168900.t1"; gene_id "Ledus.S3G168900"
Ledus.S3	AUGUSTUS	start_codon	13618885	13618887	.	-	0	transcript_id "Ledus.S3G168900.t1"; gene_id "Ledus.S3G168900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12859.t1 is derived from g4432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	53695	53997	.	-	.	Ledus.C10G000200
Ledus.C10	AUGUSTUS	transcript	53695	53997	.	-	.	transcript_id "Ledus.C10G000200.t1"; gene_id "Ledus.C10G000200"
Ledus.C10	AUGUSTUS	stop_codon	53692	53694	.	-	0	transcript_id "Ledus.C10G000200.t1"; gene_id "Ledus.C10G000200"
Ledus.C10	AUGUSTUS	CDS	53695	53997	0.93	-	0	transcript_id "Ledus.C10G000200.t1"; gene_id "Ledus.C10G000200"
Ledus.C10	AUGUSTUS	exon	53695	53997	.	-	.	transcript_id "Ledus.C10G000200.t1"; gene_id "Ledus.C10G000200"
Ledus.C10	AUGUSTUS	start_codon	53995	53997	.	-	0	transcript_id "Ledus.C10G000200.t1"; gene_id "Ledus.C10G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6532.t1 is derived from g3975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32143129	32144177	.	+	.	Ledus.S1G395300
Ledus.S1	AUGUSTUS	transcript	32143129	32144177	.	+	.	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	start_codon	32143129	32143131	.	+	0	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	CDS	32143129	32143131	0.91	+	0	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	exon	32143129	32143131	.	+	.	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	intron	32143132	32143400	.	+	.	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	CDS	32143401	32143493	1	+	0	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	exon	32143401	32143493	.	+	.	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	intron	32143494	32143631	.	+	.	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	CDS	32143632	32143716	1	+	0	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	exon	32143632	32143716	.	+	.	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	intron	32143717	32143860	.	+	.	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	CDS	32143861	32143991	1	+	2	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	exon	32143861	32143991	.	+	.	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	intron	32143992	32144108	.	+	.	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	CDS	32144109	32144177	1	+	0	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	exon	32144109	32144177	.	+	.	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
Ledus.S1	AUGUSTUS	stop_codon	32144178	32144180	.	+	0	transcript_id "Ledus.S1G395300.t1"; gene_id "Ledus.S1G395300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5778.t1 is derived from g3220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26705650	26708415	.	-	.	Ledus.S1G319900
Ledus.S1	AUGUSTUS	transcript	26705650	26708415	.	-	.	transcript_id "Ledus.S1G319900.t1"; gene_id "Ledus.S1G319900"
Ledus.S1	AUGUSTUS	stop_codon	26705647	26705649	.	-	0	transcript_id "Ledus.S1G319900.t1"; gene_id "Ledus.S1G319900"
Ledus.S1	AUGUSTUS	CDS	26705650	26708415	1	-	0	transcript_id "Ledus.S1G319900.t1"; gene_id "Ledus.S1G319900"
Ledus.S1	AUGUSTUS	exon	26705650	26708415	.	-	.	transcript_id "Ledus.S1G319900.t1"; gene_id "Ledus.S1G319900"
Ledus.S1	AUGUSTUS	start_codon	26708413	26708415	.	-	0	transcript_id "Ledus.S1G319900.t1"; gene_id "Ledus.S1G319900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2970.t1 is derived from g405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5007692	5008093	.	-	.	Ledus.S1G039100
Ledus.S1	AUGUSTUS	transcript	5007692	5008093	.	-	.	transcript_id "Ledus.S1G039100.t1"; gene_id "Ledus.S1G039100"
Ledus.S1	AUGUSTUS	stop_codon	5007689	5007691	.	-	0	transcript_id "Ledus.S1G039100.t1"; gene_id "Ledus.S1G039100"
Ledus.S1	AUGUSTUS	CDS	5007692	5008093	1	-	0	transcript_id "Ledus.S1G039100.t1"; gene_id "Ledus.S1G039100"
Ledus.S1	AUGUSTUS	exon	5007692	5008093	.	-	.	transcript_id "Ledus.S1G039100.t1"; gene_id "Ledus.S1G039100"
Ledus.S1	AUGUSTUS	start_codon	5008091	5008093	.	-	0	transcript_id "Ledus.S1G039100.t1"; gene_id "Ledus.S1G039100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4531.t1 is derived from g1968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17565503	17566564	.	+	.	Ledus.S1G195200
Ledus.S1	AUGUSTUS	transcript	17565503	17566564	.	+	.	transcript_id "Ledus.S1G195200.t1"; gene_id "Ledus.S1G195200"
Ledus.S1	AUGUSTUS	start_codon	17565503	17565505	.	+	0	transcript_id "Ledus.S1G195200.t1"; gene_id "Ledus.S1G195200"
Ledus.S1	AUGUSTUS	CDS	17565503	17566564	0.97	+	0	transcript_id "Ledus.S1G195200.t1"; gene_id "Ledus.S1G195200"
Ledus.S1	AUGUSTUS	exon	17565503	17566564	.	+	.	transcript_id "Ledus.S1G195200.t1"; gene_id "Ledus.S1G195200"
Ledus.S1	AUGUSTUS	stop_codon	17566565	17566567	.	+	0	transcript_id "Ledus.S1G195200.t1"; gene_id "Ledus.S1G195200"
# This transcript jg12922.t2 is derived from g4414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12923.t1 is derived from g4415.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	353478	354666	.	-	.	Ledus.C9G003100
Ledus.C9	AUGUSTUS	transcript	353478	354666	.	-	.	transcript_id "Ledus.C9G003100.t1"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	stop_codon	353475	353477	.	-	0	transcript_id "Ledus.C9G003100.t1"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	CDS	353478	353495	0.93	-	0	transcript_id "Ledus.C9G003100.t1"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	exon	353478	353495	.	-	.	transcript_id "Ledus.C9G003100.t1"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	intron	353496	353748	.	-	.	transcript_id "Ledus.C9G003100.t1"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	CDS	353749	353918	0.93	-	2	transcript_id "Ledus.C9G003100.t1"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	exon	353749	353918	.	-	.	transcript_id "Ledus.C9G003100.t1"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	intron	353919	354413	.	-	.	transcript_id "Ledus.C9G003100.t1"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	CDS	354414	354666	1	-	0	transcript_id "Ledus.C9G003100.t1"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	exon	354414	354666	.	-	.	transcript_id "Ledus.C9G003100.t1"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	start_codon	354664	354666	.	-	0	transcript_id "Ledus.C9G003100.t1"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	transcript	353478	354666	.	-	.	transcript_id "Ledus.C9G003100.t2"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	stop_codon	353475	353477	.	-	0	transcript_id "Ledus.C9G003100.t2"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	CDS	353478	353495	0.7	-	0	transcript_id "Ledus.C9G003100.t2"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	exon	353478	353495	.	-	.	transcript_id "Ledus.C9G003100.t2"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	intron	353496	353724	.	-	.	transcript_id "Ledus.C9G003100.t2"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	CDS	353725	353918	0.7	-	2	transcript_id "Ledus.C9G003100.t2"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	exon	353725	353918	.	-	.	transcript_id "Ledus.C9G003100.t2"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	intron	353919	354413	.	-	.	transcript_id "Ledus.C9G003100.t2"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	CDS	354414	354666	1	-	0	transcript_id "Ledus.C9G003100.t2"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	exon	354414	354666	.	-	.	transcript_id "Ledus.C9G003100.t2"; gene_id "Ledus.C9G003100"
Ledus.C9	AUGUSTUS	start_codon	354664	354666	.	-	0	transcript_id "Ledus.C9G003100.t2"; gene_id "Ledus.C9G003100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11738.t1 is derived from g5357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6493132	6493524	.	+	.	Ledus.S4G089400
Ledus.S4	AUGUSTUS	transcript	6493132	6493524	.	+	.	transcript_id "Ledus.S4G089400.t1"; gene_id "Ledus.S4G089400"
Ledus.S4	AUGUSTUS	start_codon	6493132	6493134	.	+	0	transcript_id "Ledus.S4G089400.t1"; gene_id "Ledus.S4G089400"
Ledus.S4	AUGUSTUS	CDS	6493132	6493524	0.99	+	0	transcript_id "Ledus.S4G089400.t1"; gene_id "Ledus.S4G089400"
Ledus.S4	AUGUSTUS	exon	6493132	6493524	.	+	.	transcript_id "Ledus.S4G089400.t1"; gene_id "Ledus.S4G089400"
Ledus.S4	AUGUSTUS	stop_codon	6493525	6493527	.	+	0	transcript_id "Ledus.S4G089400.t1"; gene_id "Ledus.S4G089400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6047.t1 is derived from g3490.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28666161	28679303	.	-	.	Ledus.S1G346800
Ledus.S1	AUGUSTUS	transcript	28666161	28679303	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	stop_codon	28666158	28666160	.	-	0	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28666161	28666186	0.95	-	2	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28666161	28666186	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28666187	28666274	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28666275	28667517	1	-	0	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28666275	28667517	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28667518	28667613	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28667614	28667760	1	-	0	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28667614	28667760	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28667761	28667837	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28667838	28668141	1	-	1	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28667838	28668141	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28668142	28668244	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28668245	28668553	0.99	-	1	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28668245	28668553	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28668554	28668662	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28668663	28671668	1	-	1	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28668663	28671668	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28671669	28671866	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28671867	28673520	0.99	-	2	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28671867	28673520	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28673521	28673647	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28673648	28674753	0.66	-	1	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28673648	28674753	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28674754	28674829	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28674830	28674932	1	-	2	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28674830	28674932	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28674933	28675097	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28675098	28675848	0.99	-	0	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28675098	28675848	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28675849	28675946	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28675947	28677097	0.99	-	2	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28675947	28677097	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28677098	28677191	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28677192	28677306	1	-	0	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28677192	28677306	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28677307	28677420	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28677421	28677486	0.98	-	0	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28677421	28677486	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28677487	28677627	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28677628	28677825	1	-	0	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28677628	28677825	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28677826	28678167	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28678168	28678335	1	-	0	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28678168	28678335	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28678336	28678497	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28678498	28678651	0.71	-	1	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28678498	28678651	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28678652	28678884	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28678885	28679048	0.43	-	0	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28678885	28679048	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28679049	28679131	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28679132	28679189	0.49	-	1	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28679132	28679189	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28679190	28679295	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28679296	28679303	0.43	-	0	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28679296	28679303	.	-	.	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	start_codon	28679301	28679303	.	-	0	transcript_id "Ledus.S1G346800.t1"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	transcript	28666161	28679303	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	stop_codon	28666158	28666160	.	-	0	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28666161	28666183	0.95	-	2	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28666161	28666183	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28666184	28666274	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28666275	28667517	1	-	0	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28666275	28667517	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28667518	28667613	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28667614	28667760	1	-	0	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28667614	28667760	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28667761	28667837	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28667838	28668141	1	-	1	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28667838	28668141	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28668142	28668244	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28668245	28668553	0.96	-	1	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28668245	28668553	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28668554	28668662	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28668663	28671668	1	-	1	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28668663	28671668	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28671669	28671866	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28671867	28673520	0.99	-	2	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28671867	28673520	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28673521	28673647	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28673648	28674753	0.71	-	1	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28673648	28674753	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28674754	28674829	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28674830	28674932	1	-	2	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28674830	28674932	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28674933	28675097	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28675098	28675848	0.99	-	0	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28675098	28675848	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28675849	28675946	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28675947	28677097	1	-	2	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28675947	28677097	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28677098	28677191	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28677192	28677306	1	-	0	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28677192	28677306	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28677307	28677420	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28677421	28677486	0.96	-	0	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28677421	28677486	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28677487	28677627	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28677628	28677825	1	-	0	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28677628	28677825	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28677826	28678167	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28678168	28678335	1	-	0	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28678168	28678335	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28678336	28678497	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28678498	28678651	0.72	-	1	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28678498	28678651	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28678652	28678884	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28678885	28679048	0.35	-	0	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28678885	28679048	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28679049	28679131	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28679132	28679189	0.44	-	1	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28679132	28679189	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	intron	28679190	28679295	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	CDS	28679296	28679303	0.43	-	0	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	exon	28679296	28679303	.	-	.	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
Ledus.S1	AUGUSTUS	start_codon	28679301	28679303	.	-	0	transcript_id "Ledus.S1G346800.t2"; gene_id "Ledus.S1G346800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4621.t1 is derived from g2058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18323977	18326980	.	-	.	Ledus.S1G204200
Ledus.S1	AUGUSTUS	transcript	18323977	18326980	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	stop_codon	18323974	18323976	.	-	0	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	CDS	18323977	18324111	1	-	0	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	exon	18323977	18324111	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	intron	18324112	18324201	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	CDS	18324202	18324336	1	-	0	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	exon	18324202	18324336	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	intron	18324337	18324430	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	CDS	18324431	18324529	1	-	0	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	exon	18324431	18324529	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	intron	18324530	18324647	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	CDS	18324648	18324725	1	-	0	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	exon	18324648	18324725	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	intron	18324726	18325023	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	CDS	18325024	18325089	1	-	0	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	exon	18325024	18325089	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	intron	18325090	18325171	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	CDS	18325172	18325240	1	-	0	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	exon	18325172	18325240	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	intron	18325241	18325455	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	CDS	18325456	18325530	1	-	0	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	exon	18325456	18325530	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	intron	18325531	18325660	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	CDS	18325661	18325771	1	-	0	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	exon	18325661	18325771	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	intron	18325772	18325919	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	CDS	18325920	18325982	1	-	0	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	exon	18325920	18325982	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	intron	18325983	18326077	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	CDS	18326078	18326289	1	-	2	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	exon	18326078	18326289	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	intron	18326290	18326634	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	CDS	18326635	18326980	1	-	0	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	exon	18326635	18326980	.	-	.	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
Ledus.S1	AUGUSTUS	start_codon	18326978	18326980	.	-	0	transcript_id "Ledus.S1G204200.t1"; gene_id "Ledus.S1G204200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4110.t1 is derived from g1546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14735236	14736806	.	+	.	Ledus.S1G153100
Ledus.S1	AUGUSTUS	transcript	14735236	14736806	.	+	.	transcript_id "Ledus.S1G153100.t1"; gene_id "Ledus.S1G153100"
Ledus.S1	AUGUSTUS	start_codon	14735236	14735238	.	+	0	transcript_id "Ledus.S1G153100.t1"; gene_id "Ledus.S1G153100"
Ledus.S1	AUGUSTUS	CDS	14735236	14735319	0.29	+	0	transcript_id "Ledus.S1G153100.t1"; gene_id "Ledus.S1G153100"
Ledus.S1	AUGUSTUS	exon	14735236	14735319	.	+	.	transcript_id "Ledus.S1G153100.t1"; gene_id "Ledus.S1G153100"
Ledus.S1	AUGUSTUS	intron	14735320	14735593	.	+	.	transcript_id "Ledus.S1G153100.t1"; gene_id "Ledus.S1G153100"
Ledus.S1	AUGUSTUS	CDS	14735594	14735681	1	+	0	transcript_id "Ledus.S1G153100.t1"; gene_id "Ledus.S1G153100"
Ledus.S1	AUGUSTUS	exon	14735594	14735681	.	+	.	transcript_id "Ledus.S1G153100.t1"; gene_id "Ledus.S1G153100"
Ledus.S1	AUGUSTUS	intron	14735682	14736135	.	+	.	transcript_id "Ledus.S1G153100.t1"; gene_id "Ledus.S1G153100"
Ledus.S1	AUGUSTUS	CDS	14736136	14736806	1	+	2	transcript_id "Ledus.S1G153100.t1"; gene_id "Ledus.S1G153100"
Ledus.S1	AUGUSTUS	exon	14736136	14736806	.	+	.	transcript_id "Ledus.S1G153100.t1"; gene_id "Ledus.S1G153100"
Ledus.S1	AUGUSTUS	stop_codon	14736807	14736809	.	+	0	transcript_id "Ledus.S1G153100.t1"; gene_id "Ledus.S1G153100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8581.t1 is derived from g9611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	339065	339616	.	-	.	Ledus.S3G005800
Ledus.S3	AUGUSTUS	transcript	339065	339616	.	-	.	transcript_id "Ledus.S3G005800.t1"; gene_id "Ledus.S3G005800"
Ledus.S3	AUGUSTUS	stop_codon	339062	339064	.	-	0	transcript_id "Ledus.S3G005800.t1"; gene_id "Ledus.S3G005800"
Ledus.S3	AUGUSTUS	CDS	339065	339616	0.99	-	0	transcript_id "Ledus.S3G005800.t1"; gene_id "Ledus.S3G005800"
Ledus.S3	AUGUSTUS	exon	339065	339616	.	-	.	transcript_id "Ledus.S3G005800.t1"; gene_id "Ledus.S3G005800"
Ledus.S3	AUGUSTUS	start_codon	339614	339616	.	-	0	transcript_id "Ledus.S3G005800.t1"; gene_id "Ledus.S3G005800"
# This transcript jg3298.t2 is derived from g733.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3299.t1 is derived from g734.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7368327	7372931	.	-	.	Ledus.S1G072000
Ledus.S1	AUGUSTUS	transcript	7368327	7372931	.	-	.	transcript_id "Ledus.S1G072000.t1"; gene_id "Ledus.S1G072000"
Ledus.S1	AUGUSTUS	stop_codon	7368324	7368326	.	-	0	transcript_id "Ledus.S1G072000.t1"; gene_id "Ledus.S1G072000"
Ledus.S1	AUGUSTUS	CDS	7368327	7370583	0.14	-	1	transcript_id "Ledus.S1G072000.t1"; gene_id "Ledus.S1G072000"
Ledus.S1	AUGUSTUS	exon	7368327	7370583	.	-	.	transcript_id "Ledus.S1G072000.t1"; gene_id "Ledus.S1G072000"
Ledus.S1	AUGUSTUS	intron	7370584	7372833	.	-	.	transcript_id "Ledus.S1G072000.t1"; gene_id "Ledus.S1G072000"
Ledus.S1	AUGUSTUS	CDS	7372834	7372931	0.63	-	0	transcript_id "Ledus.S1G072000.t1"; gene_id "Ledus.S1G072000"
Ledus.S1	AUGUSTUS	exon	7372834	7372931	.	-	.	transcript_id "Ledus.S1G072000.t1"; gene_id "Ledus.S1G072000"
Ledus.S1	AUGUSTUS	start_codon	7372929	7372931	.	-	0	transcript_id "Ledus.S1G072000.t1"; gene_id "Ledus.S1G072000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5739.t1 is derived from g3178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26424018	26424284	.	+	.	Ledus.S1G316000
Ledus.S1	AUGUSTUS	transcript	26424018	26424284	.	+	.	transcript_id "Ledus.S1G316000.t1"; gene_id "Ledus.S1G316000"
Ledus.S1	AUGUSTUS	start_codon	26424018	26424020	.	+	0	transcript_id "Ledus.S1G316000.t1"; gene_id "Ledus.S1G316000"
Ledus.S1	AUGUSTUS	CDS	26424018	26424284	0.4	+	0	transcript_id "Ledus.S1G316000.t1"; gene_id "Ledus.S1G316000"
Ledus.S1	AUGUSTUS	exon	26424018	26424284	.	+	.	transcript_id "Ledus.S1G316000.t1"; gene_id "Ledus.S1G316000"
Ledus.S1	AUGUSTUS	stop_codon	26424285	26424287	.	+	0	transcript_id "Ledus.S1G316000.t1"; gene_id "Ledus.S1G316000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1004.t1 is derived from g7865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6568289	6571643	.	+	.	Ledus.S2G088600
Ledus.S2	AUGUSTUS	transcript	6568289	6571643	.	+	.	transcript_id "Ledus.S2G088600.t1"; gene_id "Ledus.S2G088600"
Ledus.S2	AUGUSTUS	start_codon	6568289	6568291	.	+	0	transcript_id "Ledus.S2G088600.t1"; gene_id "Ledus.S2G088600"
Ledus.S2	AUGUSTUS	CDS	6568289	6570897	0.73	+	0	transcript_id "Ledus.S2G088600.t1"; gene_id "Ledus.S2G088600"
Ledus.S2	AUGUSTUS	exon	6568289	6570897	.	+	.	transcript_id "Ledus.S2G088600.t1"; gene_id "Ledus.S2G088600"
Ledus.S2	AUGUSTUS	intron	6570898	6571201	.	+	.	transcript_id "Ledus.S2G088600.t1"; gene_id "Ledus.S2G088600"
Ledus.S2	AUGUSTUS	CDS	6571202	6571412	0.88	+	1	transcript_id "Ledus.S2G088600.t1"; gene_id "Ledus.S2G088600"
Ledus.S2	AUGUSTUS	exon	6571202	6571412	.	+	.	transcript_id "Ledus.S2G088600.t1"; gene_id "Ledus.S2G088600"
Ledus.S2	AUGUSTUS	intron	6571413	6571574	.	+	.	transcript_id "Ledus.S2G088600.t1"; gene_id "Ledus.S2G088600"
Ledus.S2	AUGUSTUS	CDS	6571575	6571643	0.87	+	0	transcript_id "Ledus.S2G088600.t1"; gene_id "Ledus.S2G088600"
Ledus.S2	AUGUSTUS	exon	6571575	6571643	.	+	.	transcript_id "Ledus.S2G088600.t1"; gene_id "Ledus.S2G088600"
Ledus.S2	AUGUSTUS	stop_codon	6571644	6571646	.	+	0	transcript_id "Ledus.S2G088600.t1"; gene_id "Ledus.S2G088600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4280.t1 is derived from g1716.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15958894	15959655	.	+	.	Ledus.S1G170100
Ledus.S1	AUGUSTUS	transcript	15958894	15959655	.	+	.	transcript_id "Ledus.S1G170100.t1"; gene_id "Ledus.S1G170100"
Ledus.S1	AUGUSTUS	start_codon	15958894	15958896	.	+	0	transcript_id "Ledus.S1G170100.t1"; gene_id "Ledus.S1G170100"
Ledus.S1	AUGUSTUS	CDS	15958894	15959655	0.92	+	0	transcript_id "Ledus.S1G170100.t1"; gene_id "Ledus.S1G170100"
Ledus.S1	AUGUSTUS	exon	15958894	15959655	.	+	.	transcript_id "Ledus.S1G170100.t1"; gene_id "Ledus.S1G170100"
Ledus.S1	AUGUSTUS	stop_codon	15959656	15959658	.	+	0	transcript_id "Ledus.S1G170100.t1"; gene_id "Ledus.S1G170100"
# This transcript jg11065.t2 is derived from g4683.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11066.t1 is derived from g4684.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1550594	1554685	.	+	.	Ledus.S4G022200
Ledus.S4	AUGUSTUS	transcript	1550594	1554685	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	start_codon	1550594	1550596	.	+	0	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1550594	1550729	0.83	+	0	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1550594	1550729	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1550730	1550883	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1550884	1551041	1	+	2	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1550884	1551041	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1551042	1551188	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1551189	1551328	1	+	0	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1551189	1551328	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1551329	1551425	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1551426	1551574	0.92	+	1	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1551426	1551574	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1551575	1551706	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1551707	1552125	0.65	+	2	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1551707	1552125	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1552126	1552323	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1552324	1552434	1	+	0	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1552324	1552434	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1552435	1552544	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1552545	1552667	0.66	+	0	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1552545	1552667	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1552668	1552776	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1552777	1552919	0.69	+	0	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1552777	1552919	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1552920	1553029	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1553030	1553099	0.69	+	1	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1553030	1553099	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1553100	1553210	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1553211	1553303	1	+	0	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1553211	1553303	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1553304	1553392	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1553393	1553520	1	+	0	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1553393	1553520	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1553521	1553613	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1553614	1553767	1	+	1	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1553614	1553767	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1553768	1553919	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1553920	1553981	0.72	+	0	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1553920	1553981	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1553982	1554205	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1554206	1554424	0.75	+	1	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1554206	1554424	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1554425	1554642	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1554643	1554685	1	+	1	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1554643	1554685	.	+	.	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	stop_codon	1554686	1554688	.	+	0	transcript_id "Ledus.S4G022200.t1"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	transcript	1550605	1554685	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	start_codon	1550605	1550607	.	+	0	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1550605	1550725	0.98	+	0	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1550605	1550725	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1550726	1550883	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1550884	1551041	0.98	+	2	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1550884	1551041	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1551042	1551188	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1551189	1551328	1	+	0	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1551189	1551328	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1551329	1551425	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1551426	1551574	0.95	+	1	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1551426	1551574	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1551575	1551706	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1551707	1552125	0.63	+	2	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1551707	1552125	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1552126	1552323	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1552324	1552434	1	+	0	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1552324	1552434	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1552435	1552544	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1552545	1552667	0.62	+	0	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1552545	1552667	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1552668	1552776	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1552777	1552919	0.66	+	0	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1552777	1552919	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1552920	1553029	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1553030	1553099	0.62	+	1	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1553030	1553099	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1553100	1553210	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1553211	1553303	0.98	+	0	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1553211	1553303	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1553304	1553392	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1553393	1553520	1	+	0	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1553393	1553520	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1553521	1553613	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1553614	1553767	1	+	1	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1553614	1553767	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1553768	1553919	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1553920	1553981	0.67	+	0	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1553920	1553981	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1553982	1554205	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1554206	1554424	0.67	+	1	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1554206	1554424	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	intron	1554425	1554642	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	CDS	1554643	1554685	1	+	1	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	exon	1554643	1554685	.	+	.	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
Ledus.S4	AUGUSTUS	stop_codon	1554686	1554688	.	+	0	transcript_id "Ledus.S4G022200.t2"; gene_id "Ledus.S4G022200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11041.t1 is derived from g4659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1366181	1366728	.	-	.	Ledus.S4G019700
Ledus.S4	AUGUSTUS	transcript	1366181	1366728	.	-	.	transcript_id "Ledus.S4G019700.t1"; gene_id "Ledus.S4G019700"
Ledus.S4	AUGUSTUS	stop_codon	1366178	1366180	.	-	0	transcript_id "Ledus.S4G019700.t1"; gene_id "Ledus.S4G019700"
Ledus.S4	AUGUSTUS	CDS	1366181	1366329	0.99	-	2	transcript_id "Ledus.S4G019700.t1"; gene_id "Ledus.S4G019700"
Ledus.S4	AUGUSTUS	exon	1366181	1366329	.	-	.	transcript_id "Ledus.S4G019700.t1"; gene_id "Ledus.S4G019700"
Ledus.S4	AUGUSTUS	intron	1366330	1366484	.	-	.	transcript_id "Ledus.S4G019700.t1"; gene_id "Ledus.S4G019700"
Ledus.S4	AUGUSTUS	CDS	1366485	1366728	0.88	-	0	transcript_id "Ledus.S4G019700.t1"; gene_id "Ledus.S4G019700"
Ledus.S4	AUGUSTUS	exon	1366485	1366728	.	-	.	transcript_id "Ledus.S4G019700.t1"; gene_id "Ledus.S4G019700"
Ledus.S4	AUGUSTUS	start_codon	1366726	1366728	.	-	0	transcript_id "Ledus.S4G019700.t1"; gene_id "Ledus.S4G019700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5909.t1 is derived from g3352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27739292	27739777	.	+	.	Ledus.S1G333000
Ledus.S1	AUGUSTUS	transcript	27739292	27739777	.	+	.	transcript_id "Ledus.S1G333000.t1"; gene_id "Ledus.S1G333000"
Ledus.S1	AUGUSTUS	start_codon	27739292	27739294	.	+	0	transcript_id "Ledus.S1G333000.t1"; gene_id "Ledus.S1G333000"
Ledus.S1	AUGUSTUS	CDS	27739292	27739777	1	+	0	transcript_id "Ledus.S1G333000.t1"; gene_id "Ledus.S1G333000"
Ledus.S1	AUGUSTUS	exon	27739292	27739777	.	+	.	transcript_id "Ledus.S1G333000.t1"; gene_id "Ledus.S1G333000"
Ledus.S1	AUGUSTUS	stop_codon	27739778	27739780	.	+	0	transcript_id "Ledus.S1G333000.t1"; gene_id "Ledus.S1G333000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10781.t1 is derived from g11813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17612089	17613147	.	-	.	Ledus.S3G225800
Ledus.S3	AUGUSTUS	transcript	17612089	17613147	.	-	.	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	stop_codon	17612086	17612088	.	-	0	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	CDS	17612089	17612142	1	-	0	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	exon	17612089	17612142	.	-	.	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	intron	17612143	17612237	.	-	.	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	CDS	17612238	17612321	1	-	0	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	exon	17612238	17612321	.	-	.	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	intron	17612322	17612441	.	-	.	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	CDS	17612442	17612555	1	-	0	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	exon	17612442	17612555	.	-	.	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	intron	17612556	17612636	.	-	.	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	CDS	17612637	17612743	1	-	2	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	exon	17612637	17612743	.	-	.	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	intron	17612744	17612927	.	-	.	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	CDS	17612928	17613147	0.7	-	0	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	exon	17612928	17613147	.	-	.	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
Ledus.S3	AUGUSTUS	start_codon	17613145	17613147	.	-	0	transcript_id "Ledus.S3G225800.t1"; gene_id "Ledus.S3G225800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1818.t1 is derived from g8681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12737009	12737667	.	-	.	Ledus.S2G170000
Ledus.S2	AUGUSTUS	transcript	12737009	12737667	.	-	.	transcript_id "Ledus.S2G170000.t1"; gene_id "Ledus.S2G170000"
Ledus.S2	AUGUSTUS	stop_codon	12737006	12737008	.	-	0	transcript_id "Ledus.S2G170000.t1"; gene_id "Ledus.S2G170000"
Ledus.S2	AUGUSTUS	CDS	12737009	12737087	0.96	-	1	transcript_id "Ledus.S2G170000.t1"; gene_id "Ledus.S2G170000"
Ledus.S2	AUGUSTUS	exon	12737009	12737087	.	-	.	transcript_id "Ledus.S2G170000.t1"; gene_id "Ledus.S2G170000"
Ledus.S2	AUGUSTUS	intron	12737088	12737217	.	-	.	transcript_id "Ledus.S2G170000.t1"; gene_id "Ledus.S2G170000"
Ledus.S2	AUGUSTUS	CDS	12737218	12737261	0.82	-	0	transcript_id "Ledus.S2G170000.t1"; gene_id "Ledus.S2G170000"
Ledus.S2	AUGUSTUS	exon	12737218	12737261	.	-	.	transcript_id "Ledus.S2G170000.t1"; gene_id "Ledus.S2G170000"
Ledus.S2	AUGUSTUS	intron	12737262	12737553	.	-	.	transcript_id "Ledus.S2G170000.t1"; gene_id "Ledus.S2G170000"
Ledus.S2	AUGUSTUS	CDS	12737554	12737667	0.15	-	0	transcript_id "Ledus.S2G170000.t1"; gene_id "Ledus.S2G170000"
Ledus.S2	AUGUSTUS	exon	12737554	12737667	.	-	.	transcript_id "Ledus.S2G170000.t1"; gene_id "Ledus.S2G170000"
Ledus.S2	AUGUSTUS	start_codon	12737665	12737667	.	-	0	transcript_id "Ledus.S2G170000.t1"; gene_id "Ledus.S2G170000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11875.t1 is derived from g5494.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7480050	7480742	.	+	.	Ledus.S4G103100
Ledus.S4	AUGUSTUS	transcript	7480050	7480742	.	+	.	transcript_id "Ledus.S4G103100.t1"; gene_id "Ledus.S4G103100"
Ledus.S4	AUGUSTUS	start_codon	7480050	7480052	.	+	0	transcript_id "Ledus.S4G103100.t1"; gene_id "Ledus.S4G103100"
Ledus.S4	AUGUSTUS	CDS	7480050	7480742	1	+	0	transcript_id "Ledus.S4G103100.t1"; gene_id "Ledus.S4G103100"
Ledus.S4	AUGUSTUS	exon	7480050	7480742	.	+	.	transcript_id "Ledus.S4G103100.t1"; gene_id "Ledus.S4G103100"
Ledus.S4	AUGUSTUS	stop_codon	7480743	7480745	.	+	0	transcript_id "Ledus.S4G103100.t1"; gene_id "Ledus.S4G103100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8414.t1 is derived from g13086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11532247	11536688	.	+	.	Ledus.S5G119200
Ledus.S5	AUGUSTUS	transcript	11532247	11536688	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	start_codon	11532247	11532249	.	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11532247	11532489	1	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11532247	11532489	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11532490	11532736	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11532737	11532952	0.97	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11532737	11532952	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11532953	11533169	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11533170	11534279	0.7	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11533170	11534279	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11534280	11534412	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11534413	11534538	1	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11534413	11534538	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11534539	11534681	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11534682	11534704	0.94	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11534682	11534704	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11534705	11534793	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11534794	11534863	0.93	+	1	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11534794	11534863	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11534864	11535055	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11535056	11535101	0.94	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11535056	11535101	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11535102	11535180	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11535181	11535287	0.94	+	2	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11535181	11535287	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11535288	11535418	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11535419	11535619	1	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11535419	11535619	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11535620	11535758	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11535759	11535890	1	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11535759	11535890	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11535891	11535986	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11535987	11536055	1	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11535987	11536055	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11536056	11536156	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11536157	11536279	1	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11536157	11536279	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11536280	11536372	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11536373	11536423	1	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11536373	11536423	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	intron	11536424	11536547	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	CDS	11536548	11536688	1	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	exon	11536548	11536688	.	+	.	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
Ledus.S5	AUGUSTUS	stop_codon	11536689	11536691	.	+	0	transcript_id "Ledus.S5G119200.t1"; gene_id "Ledus.S5G119200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg521.t1 is derived from g7382.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3023895	3024917	.	+	.	Ledus.S2G040300
Ledus.S2	AUGUSTUS	transcript	3023895	3024917	.	+	.	transcript_id "Ledus.S2G040300.t1"; gene_id "Ledus.S2G040300"
Ledus.S2	AUGUSTUS	start_codon	3023895	3023897	.	+	0	transcript_id "Ledus.S2G040300.t1"; gene_id "Ledus.S2G040300"
Ledus.S2	AUGUSTUS	CDS	3023895	3024917	1	+	0	transcript_id "Ledus.S2G040300.t1"; gene_id "Ledus.S2G040300"
Ledus.S2	AUGUSTUS	exon	3023895	3024917	.	+	.	transcript_id "Ledus.S2G040300.t1"; gene_id "Ledus.S2G040300"
Ledus.S2	AUGUSTUS	stop_codon	3024918	3024920	.	+	0	transcript_id "Ledus.S2G040300.t1"; gene_id "Ledus.S2G040300"
# This transcript jg6021.t2 is derived from g3464.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6022.t1 is derived from g3465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28471353	28472374	.	-	.	Ledus.S1G344300
Ledus.S1	AUGUSTUS	transcript	28471353	28472374	.	-	.	transcript_id "Ledus.S1G344300.t1"; gene_id "Ledus.S1G344300"
Ledus.S1	AUGUSTUS	stop_codon	28471350	28471352	.	-	0	transcript_id "Ledus.S1G344300.t1"; gene_id "Ledus.S1G344300"
Ledus.S1	AUGUSTUS	CDS	28471353	28471658	0.73	-	0	transcript_id "Ledus.S1G344300.t1"; gene_id "Ledus.S1G344300"
Ledus.S1	AUGUSTUS	exon	28471353	28471658	.	-	.	transcript_id "Ledus.S1G344300.t1"; gene_id "Ledus.S1G344300"
Ledus.S1	AUGUSTUS	intron	28471659	28471771	.	-	.	transcript_id "Ledus.S1G344300.t1"; gene_id "Ledus.S1G344300"
Ledus.S1	AUGUSTUS	CDS	28471772	28472374	0.93	-	0	transcript_id "Ledus.S1G344300.t1"; gene_id "Ledus.S1G344300"
Ledus.S1	AUGUSTUS	exon	28471772	28472374	.	-	.	transcript_id "Ledus.S1G344300.t1"; gene_id "Ledus.S1G344300"
Ledus.S1	AUGUSTUS	start_codon	28472372	28472374	.	-	0	transcript_id "Ledus.S1G344300.t1"; gene_id "Ledus.S1G344300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5095.t1 is derived from g2534.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21564630	21565215	.	+	.	Ledus.S1G251600
Ledus.S1	AUGUSTUS	transcript	21564630	21565215	.	+	.	transcript_id "Ledus.S1G251600.t1"; gene_id "Ledus.S1G251600"
Ledus.S1	AUGUSTUS	start_codon	21564630	21564632	.	+	0	transcript_id "Ledus.S1G251600.t1"; gene_id "Ledus.S1G251600"
Ledus.S1	AUGUSTUS	CDS	21564630	21564884	0.56	+	0	transcript_id "Ledus.S1G251600.t1"; gene_id "Ledus.S1G251600"
Ledus.S1	AUGUSTUS	exon	21564630	21564884	.	+	.	transcript_id "Ledus.S1G251600.t1"; gene_id "Ledus.S1G251600"
Ledus.S1	AUGUSTUS	intron	21564885	21564990	.	+	.	transcript_id "Ledus.S1G251600.t1"; gene_id "Ledus.S1G251600"
Ledus.S1	AUGUSTUS	CDS	21564991	21565215	0.64	+	0	transcript_id "Ledus.S1G251600.t1"; gene_id "Ledus.S1G251600"
Ledus.S1	AUGUSTUS	exon	21564991	21565215	.	+	.	transcript_id "Ledus.S1G251600.t1"; gene_id "Ledus.S1G251600"
Ledus.S1	AUGUSTUS	stop_codon	21565216	21565218	.	+	0	transcript_id "Ledus.S1G251600.t1"; gene_id "Ledus.S1G251600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3426.t1 is derived from g861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8251464	8255117	.	-	.	Ledus.S1G084700
Ledus.S1	AUGUSTUS	transcript	8251464	8255117	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	stop_codon	8251461	8251463	.	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8251464	8251520	1	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8251464	8251520	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8251521	8251602	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8251603	8251652	1	-	2	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8251603	8251652	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8251653	8251739	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8251740	8251815	1	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8251740	8251815	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8251816	8251907	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8251908	8251985	1	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8251908	8251985	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8251986	8252076	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8252077	8252158	1	-	1	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8252077	8252158	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8252159	8252229	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8252230	8252322	1	-	1	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8252230	8252322	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8252323	8252397	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8252398	8252507	1	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8252398	8252507	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8252508	8252595	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8252596	8252658	1	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8252596	8252658	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8252659	8252789	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8252790	8252841	1	-	1	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8252790	8252841	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8252842	8252935	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8252936	8253060	0.99	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8252936	8253060	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8253061	8253161	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8253162	8253275	1	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8253162	8253275	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8253276	8253397	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8253398	8253457	1	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8253398	8253457	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8253458	8253649	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8253650	8253726	1	-	2	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8253650	8253726	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8253727	8253820	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8253821	8253885	1	-	1	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8253821	8253885	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8253886	8253985	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8253986	8254089	1	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8253986	8254089	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8254090	8254296	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8254297	8254345	1	-	1	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8254297	8254345	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8254346	8254438	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8254439	8254620	1	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8254439	8254620	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8254621	8254764	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8254765	8254835	1	-	2	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8254765	8254835	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	intron	8254836	8255005	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	CDS	8255006	8255117	0.99	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	exon	8255006	8255117	.	-	.	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
Ledus.S1	AUGUSTUS	start_codon	8255115	8255117	.	-	0	transcript_id "Ledus.S1G084700.t1"; gene_id "Ledus.S1G084700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6061.t1 is derived from g3504.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28791297	28792882	.	+	.	Ledus.S1G348200
Ledus.S1	AUGUSTUS	transcript	28791297	28792882	.	+	.	transcript_id "Ledus.S1G348200.t1"; gene_id "Ledus.S1G348200"
Ledus.S1	AUGUSTUS	start_codon	28791297	28791299	.	+	0	transcript_id "Ledus.S1G348200.t1"; gene_id "Ledus.S1G348200"
Ledus.S1	AUGUSTUS	CDS	28791297	28791767	0.66	+	0	transcript_id "Ledus.S1G348200.t1"; gene_id "Ledus.S1G348200"
Ledus.S1	AUGUSTUS	exon	28791297	28791767	.	+	.	transcript_id "Ledus.S1G348200.t1"; gene_id "Ledus.S1G348200"
Ledus.S1	AUGUSTUS	intron	28791768	28791943	.	+	.	transcript_id "Ledus.S1G348200.t1"; gene_id "Ledus.S1G348200"
Ledus.S1	AUGUSTUS	CDS	28791944	28792169	1	+	0	transcript_id "Ledus.S1G348200.t1"; gene_id "Ledus.S1G348200"
Ledus.S1	AUGUSTUS	exon	28791944	28792169	.	+	.	transcript_id "Ledus.S1G348200.t1"; gene_id "Ledus.S1G348200"
Ledus.S1	AUGUSTUS	intron	28792170	28792286	.	+	.	transcript_id "Ledus.S1G348200.t1"; gene_id "Ledus.S1G348200"
Ledus.S1	AUGUSTUS	CDS	28792287	28792882	1	+	2	transcript_id "Ledus.S1G348200.t1"; gene_id "Ledus.S1G348200"
Ledus.S1	AUGUSTUS	exon	28792287	28792882	.	+	.	transcript_id "Ledus.S1G348200.t1"; gene_id "Ledus.S1G348200"
Ledus.S1	AUGUSTUS	stop_codon	28792883	28792885	.	+	0	transcript_id "Ledus.S1G348200.t1"; gene_id "Ledus.S1G348200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2930.t1 is derived from g365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4633990	4634634	.	+	.	Ledus.S1G035100
Ledus.S1	AUGUSTUS	transcript	4633990	4634634	.	+	.	transcript_id "Ledus.S1G035100.t1"; gene_id "Ledus.S1G035100"
Ledus.S1	AUGUSTUS	start_codon	4633990	4633992	.	+	0	transcript_id "Ledus.S1G035100.t1"; gene_id "Ledus.S1G035100"
Ledus.S1	AUGUSTUS	CDS	4633990	4634194	0.55	+	0	transcript_id "Ledus.S1G035100.t1"; gene_id "Ledus.S1G035100"
Ledus.S1	AUGUSTUS	exon	4633990	4634194	.	+	.	transcript_id "Ledus.S1G035100.t1"; gene_id "Ledus.S1G035100"
Ledus.S1	AUGUSTUS	intron	4634195	4634278	.	+	.	transcript_id "Ledus.S1G035100.t1"; gene_id "Ledus.S1G035100"
Ledus.S1	AUGUSTUS	CDS	4634279	4634634	0.64	+	2	transcript_id "Ledus.S1G035100.t1"; gene_id "Ledus.S1G035100"
Ledus.S1	AUGUSTUS	exon	4634279	4634634	.	+	.	transcript_id "Ledus.S1G035100.t1"; gene_id "Ledus.S1G035100"
Ledus.S1	AUGUSTUS	stop_codon	4634635	4634637	.	+	0	transcript_id "Ledus.S1G035100.t1"; gene_id "Ledus.S1G035100"
# This transcript jg9371.t2 is derived from g10401.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9372.t1 is derived from g10402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6419064	6419468	.	+	.	Ledus.S3G084900
Ledus.S3	AUGUSTUS	transcript	6419064	6419468	.	+	.	transcript_id "Ledus.S3G084900.t1"; gene_id "Ledus.S3G084900"
Ledus.S3	AUGUSTUS	start_codon	6419064	6419066	.	+	0	transcript_id "Ledus.S3G084900.t1"; gene_id "Ledus.S3G084900"
Ledus.S3	AUGUSTUS	CDS	6419064	6419468	0.85	+	0	transcript_id "Ledus.S3G084900.t1"; gene_id "Ledus.S3G084900"
Ledus.S3	AUGUSTUS	exon	6419064	6419468	.	+	.	transcript_id "Ledus.S3G084900.t1"; gene_id "Ledus.S3G084900"
Ledus.S3	AUGUSTUS	stop_codon	6419469	6419471	.	+	0	transcript_id "Ledus.S3G084900.t1"; gene_id "Ledus.S3G084900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4604.t1 is derived from g2041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18102543	18105820	.	-	.	Ledus.S1G202500
Ledus.S1	AUGUSTUS	transcript	18102543	18105820	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	stop_codon	18102540	18102542	.	-	0	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	CDS	18102543	18102716	0.99	-	0	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	exon	18102543	18102716	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	intron	18102717	18102814	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	CDS	18102815	18102907	1	-	0	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	exon	18102815	18102907	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	intron	18102908	18102981	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	CDS	18102982	18103202	1	-	2	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	exon	18102982	18103202	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	intron	18103203	18103278	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	CDS	18103279	18103445	1	-	1	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	exon	18103279	18103445	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	intron	18103446	18103548	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	CDS	18103549	18103691	1	-	0	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	exon	18103549	18103691	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	intron	18103692	18103777	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	CDS	18103778	18103996	0.95	-	0	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	exon	18103778	18103996	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	intron	18103997	18104117	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	CDS	18104118	18104198	0.99	-	0	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	exon	18104118	18104198	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	intron	18104199	18104350	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	CDS	18104351	18104530	1	-	0	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	exon	18104351	18104530	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	intron	18104531	18104616	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	CDS	18104617	18104947	1	-	1	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	exon	18104617	18104947	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	intron	18104948	18105044	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	CDS	18105045	18105158	1	-	1	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	exon	18105045	18105158	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	intron	18105159	18105256	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	CDS	18105257	18105348	1	-	0	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	exon	18105257	18105348	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	intron	18105349	18105439	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	CDS	18105440	18105820	0.62	-	0	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	exon	18105440	18105820	.	-	.	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
Ledus.S1	AUGUSTUS	start_codon	18105818	18105820	.	-	0	transcript_id "Ledus.S1G202500.t1"; gene_id "Ledus.S1G202500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11983.t1 is derived from g5602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8294066	8297624	.	+	.	Ledus.S4G113900
Ledus.S4	AUGUSTUS	transcript	8294066	8297624	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	start_codon	8294066	8294068	.	+	0	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	CDS	8294066	8294463	0.88	+	0	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	exon	8294066	8294463	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	intron	8294464	8294553	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	CDS	8294554	8294809	0.99	+	1	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	exon	8294554	8294809	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	intron	8294810	8295003	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	CDS	8295004	8295128	1	+	0	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	exon	8295004	8295128	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	intron	8295129	8295260	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	CDS	8295261	8295401	0.94	+	1	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	exon	8295261	8295401	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	intron	8295402	8295604	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	CDS	8295605	8295712	0.93	+	1	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	exon	8295605	8295712	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	intron	8295713	8296527	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	CDS	8296528	8296558	0.74	+	1	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	exon	8296528	8296558	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	intron	8296559	8296626	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	CDS	8296627	8296652	0.89	+	0	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	exon	8296627	8296652	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	intron	8296653	8296764	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	CDS	8296765	8296870	0.92	+	1	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	exon	8296765	8296870	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	intron	8296871	8296958	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	CDS	8296959	8297030	1	+	0	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	exon	8296959	8297030	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	intron	8297031	8297203	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	CDS	8297204	8297270	1	+	0	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	exon	8297204	8297270	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	intron	8297271	8297466	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	CDS	8297467	8297624	0.81	+	2	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	exon	8297467	8297624	.	+	.	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
Ledus.S4	AUGUSTUS	stop_codon	8297625	8297627	.	+	0	transcript_id "Ledus.S4G113900.t1"; gene_id "Ledus.S4G113900"
# This transcript jg1731.t2 is derived from g8592.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1732.t1 is derived from g8594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12219237	12221547	.	+	.	Ledus.S2G161400
Ledus.S2	AUGUSTUS	transcript	12219237	12221547	.	+	.	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	start_codon	12219237	12219239	.	+	0	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	CDS	12219237	12219404	0.56	+	0	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	exon	12219237	12219404	.	+	.	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	intron	12219405	12219736	.	+	.	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	CDS	12219737	12219768	0.98	+	0	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	exon	12219737	12219768	.	+	.	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	intron	12219769	12219826	.	+	.	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	CDS	12219827	12219884	0.98	+	1	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	exon	12219827	12219884	.	+	.	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	intron	12219885	12219967	.	+	.	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	CDS	12219968	12220279	0.95	+	0	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	exon	12219968	12220279	.	+	.	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	intron	12220280	12220386	.	+	.	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	CDS	12220387	12221223	0.71	+	0	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	exon	12220387	12221223	.	+	.	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	intron	12221224	12221451	.	+	.	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	CDS	12221452	12221547	0.82	+	0	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	exon	12221452	12221547	.	+	.	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
Ledus.S2	AUGUSTUS	stop_codon	12221548	12221550	.	+	0	transcript_id "Ledus.S2G161400.t1"; gene_id "Ledus.S2G161400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13172.t1 is derived from g9446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C41	AUGUSTUS	gene	9322	11268	.	-	.	Ledus.C41G000300
Ledus.C41	AUGUSTUS	transcript	9322	11268	.	-	.	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	stop_codon	9319	9321	.	-	0	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	CDS	9322	9847	0.8	-	1	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	exon	9322	9847	.	-	.	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	intron	9848	9959	.	-	.	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	CDS	9960	10418	0.99	-	1	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	exon	9960	10418	.	-	.	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	intron	10419	10524	.	-	.	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	CDS	10525	10865	0.99	-	0	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	exon	10525	10865	.	-	.	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	intron	10866	10953	.	-	.	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	CDS	10954	11268	0.71	-	0	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	exon	10954	11268	.	-	.	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
Ledus.C41	AUGUSTUS	start_codon	11266	11268	.	-	0	transcript_id "Ledus.C41G000300.t1"; gene_id "Ledus.C41G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12021.t1 is derived from g5640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8781268	8782372	.	-	.	Ledus.S4G117700
Ledus.S4	AUGUSTUS	transcript	8781268	8782372	.	-	.	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	stop_codon	8781265	8781267	.	-	0	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	CDS	8781268	8781350	0.32	-	2	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	exon	8781268	8781350	.	-	.	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	intron	8781351	8781657	.	-	.	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	CDS	8781658	8781722	1	-	1	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	exon	8781658	8781722	.	-	.	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	intron	8781723	8781819	.	-	.	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	CDS	8781820	8781934	1	-	2	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	exon	8781820	8781934	.	-	.	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	intron	8781935	8782263	.	-	.	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	CDS	8782264	8782372	0.77	-	0	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	exon	8782264	8782372	.	-	.	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
Ledus.S4	AUGUSTUS	start_codon	8782370	8782372	.	-	0	transcript_id "Ledus.S4G117700.t1"; gene_id "Ledus.S4G117700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3353.t1 is derived from g788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7768903	7772825	.	-	.	Ledus.S1G077400
Ledus.S1	AUGUSTUS	transcript	7768903	7772825	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	stop_codon	7768900	7768902	.	-	0	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	CDS	7768903	7769732	0.88	-	2	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	exon	7768903	7769732	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	intron	7769733	7769825	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	CDS	7769826	7770526	1	-	1	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	exon	7769826	7770526	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	intron	7770527	7770652	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	CDS	7770653	7770805	1	-	1	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	exon	7770653	7770805	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	intron	7770806	7770932	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	CDS	7770933	7771091	1	-	1	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	exon	7770933	7771091	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	intron	7771092	7771182	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	CDS	7771183	7771497	0.95	-	1	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	exon	7771183	7771497	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	intron	7771498	7771610	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	CDS	7771611	7771772	1	-	1	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	exon	7771611	7771772	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	intron	7771773	7771853	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	CDS	7771854	7772041	1	-	0	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	exon	7771854	7772041	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	intron	7772042	7772126	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	CDS	7772127	7772825	0.83	-	0	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	exon	7772127	7772825	.	-	.	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
Ledus.S1	AUGUSTUS	start_codon	7772823	7772825	.	-	0	transcript_id "Ledus.S1G077400.t1"; gene_id "Ledus.S1G077400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1080.t1 is derived from g7941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7311091	7312176	.	+	.	Ledus.S2G096200
Ledus.S2	AUGUSTUS	transcript	7311091	7312176	.	+	.	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	start_codon	7311091	7311093	.	+	0	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	CDS	7311091	7311143	0.36	+	0	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	exon	7311091	7311143	.	+	.	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	intron	7311144	7311304	.	+	.	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	CDS	7311305	7311368	0.59	+	1	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	exon	7311305	7311368	.	+	.	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	intron	7311369	7311585	.	+	.	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	CDS	7311586	7311607	0.81	+	0	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	exon	7311586	7311607	.	+	.	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	intron	7311608	7311757	.	+	.	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	CDS	7311758	7312176	0.71	+	2	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	exon	7311758	7312176	.	+	.	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
Ledus.S2	AUGUSTUS	stop_codon	7312177	7312179	.	+	0	transcript_id "Ledus.S2G096200.t1"; gene_id "Ledus.S2G096200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10382.t1 is derived from g11412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14612522	14614828	.	-	.	Ledus.S3G185900
Ledus.S3	AUGUSTUS	transcript	14612522	14614828	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	stop_codon	14612519	14612521	.	-	0	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	CDS	14612522	14612649	1	-	2	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	exon	14612522	14612649	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	intron	14612650	14612725	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	CDS	14612726	14613089	0.99	-	0	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	exon	14612726	14613089	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	intron	14613090	14613166	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	CDS	14613167	14613768	0.91	-	2	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	exon	14613167	14613768	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	intron	14613769	14613843	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	CDS	14613844	14613969	0.86	-	2	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	exon	14613844	14613969	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	intron	14613970	14614048	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	CDS	14614049	14614293	0.86	-	1	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	exon	14614049	14614293	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	intron	14614294	14614367	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	CDS	14614368	14614519	1	-	0	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	exon	14614368	14614519	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	intron	14614520	14614594	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	CDS	14614595	14614828	0.94	-	0	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	exon	14614595	14614828	.	-	.	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
Ledus.S3	AUGUSTUS	start_codon	14614826	14614828	.	-	0	transcript_id "Ledus.S3G185900.t1"; gene_id "Ledus.S3G185900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3909.t1 is derived from g1345.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13529855	13531199	.	-	.	Ledus.S1G133000
Ledus.S1	AUGUSTUS	transcript	13529855	13531199	.	-	.	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	stop_codon	13529852	13529854	.	-	0	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	CDS	13529855	13530033	1	-	2	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	exon	13529855	13530033	.	-	.	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	intron	13530034	13530129	.	-	.	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	CDS	13530130	13530289	1	-	0	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	exon	13530130	13530289	.	-	.	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	intron	13530290	13530384	.	-	.	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	CDS	13530385	13530528	0.98	-	0	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	exon	13530385	13530528	.	-	.	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	intron	13530529	13530645	.	-	.	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	CDS	13530646	13530717	0.9	-	0	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	exon	13530646	13530717	.	-	.	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	intron	13530718	13530809	.	-	.	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	CDS	13530810	13530922	1	-	2	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	exon	13530810	13530922	.	-	.	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	intron	13530923	13531006	.	-	.	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	CDS	13531007	13531199	0.81	-	0	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	exon	13531007	13531199	.	-	.	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
Ledus.S1	AUGUSTUS	start_codon	13531197	13531199	.	-	0	transcript_id "Ledus.S1G133000.t1"; gene_id "Ledus.S1G133000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7893.t1 is derived from g12564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7710112	7711492	.	-	.	Ledus.S5G067100
Ledus.S5	AUGUSTUS	transcript	7710112	7711492	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	stop_codon	7710109	7710111	.	-	0	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	CDS	7710112	7710178	1	-	1	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	exon	7710112	7710178	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	intron	7710179	7710256	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	CDS	7710257	7710327	1	-	0	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	exon	7710257	7710327	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	intron	7710328	7710407	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	CDS	7710408	7710532	1	-	2	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	exon	7710408	7710532	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	intron	7710533	7710642	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	CDS	7710643	7710757	1	-	0	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	exon	7710643	7710757	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	intron	7710758	7710874	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	CDS	7710875	7710969	1	-	2	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	exon	7710875	7710969	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	intron	7710970	7711110	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	CDS	7711111	7711219	1	-	0	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	exon	7711111	7711219	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	intron	7711220	7711480	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	CDS	7711481	7711492	0.87	-	0	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	exon	7711481	7711492	.	-	.	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
Ledus.S5	AUGUSTUS	start_codon	7711490	7711492	.	-	0	transcript_id "Ledus.S5G067100.t1"; gene_id "Ledus.S5G067100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2936.t1 is derived from g371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4659498	4661136	.	+	.	Ledus.S1G035700
Ledus.S1	AUGUSTUS	transcript	4659498	4661136	.	+	.	transcript_id "Ledus.S1G035700.t1"; gene_id "Ledus.S1G035700"
Ledus.S1	AUGUSTUS	start_codon	4659498	4659500	.	+	0	transcript_id "Ledus.S1G035700.t1"; gene_id "Ledus.S1G035700"
Ledus.S1	AUGUSTUS	CDS	4659498	4660479	0.99	+	0	transcript_id "Ledus.S1G035700.t1"; gene_id "Ledus.S1G035700"
Ledus.S1	AUGUSTUS	exon	4659498	4660479	.	+	.	transcript_id "Ledus.S1G035700.t1"; gene_id "Ledus.S1G035700"
Ledus.S1	AUGUSTUS	intron	4660480	4660645	.	+	.	transcript_id "Ledus.S1G035700.t1"; gene_id "Ledus.S1G035700"
Ledus.S1	AUGUSTUS	CDS	4660646	4661136	0.98	+	2	transcript_id "Ledus.S1G035700.t1"; gene_id "Ledus.S1G035700"
Ledus.S1	AUGUSTUS	exon	4660646	4661136	.	+	.	transcript_id "Ledus.S1G035700.t1"; gene_id "Ledus.S1G035700"
Ledus.S1	AUGUSTUS	stop_codon	4661137	4661139	.	+	0	transcript_id "Ledus.S1G035700.t1"; gene_id "Ledus.S1G035700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1139.t1 is derived from g8000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7881079	7883583	.	+	.	Ledus.S2G102100
Ledus.S2	AUGUSTUS	transcript	7881079	7883583	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	start_codon	7881079	7881081	.	+	0	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	CDS	7881079	7881450	0.79	+	0	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	exon	7881079	7881450	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	intron	7881451	7881646	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	CDS	7881647	7881746	1	+	0	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	exon	7881647	7881746	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	intron	7881747	7881840	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	CDS	7881841	7881938	1	+	2	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	exon	7881841	7881938	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	intron	7881939	7882055	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	CDS	7882056	7882141	1	+	0	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	exon	7882056	7882141	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	intron	7882142	7882320	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	CDS	7882321	7882381	1	+	1	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	exon	7882321	7882381	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	intron	7882382	7882470	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	CDS	7882471	7882557	1	+	0	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	exon	7882471	7882557	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	intron	7882558	7882649	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	CDS	7882650	7882727	1	+	0	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	exon	7882650	7882727	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	intron	7882728	7882822	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	CDS	7882823	7882876	1	+	0	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	exon	7882823	7882876	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	intron	7882877	7882976	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	CDS	7882977	7883032	1	+	0	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	exon	7882977	7883032	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	intron	7883033	7883132	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	CDS	7883133	7883268	1	+	1	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	exon	7883133	7883268	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	intron	7883269	7883361	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	CDS	7883362	7883583	1	+	0	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	exon	7883362	7883583	.	+	.	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
Ledus.S2	AUGUSTUS	stop_codon	7883584	7883586	.	+	0	transcript_id "Ledus.S2G102100.t1"; gene_id "Ledus.S2G102100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg113.t1 is derived from g9526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	507045	507648	.	-	.	Ledus.C8G007300
Ledus.C8	AUGUSTUS	transcript	507045	507648	.	-	.	transcript_id "Ledus.C8G007300.t1"; gene_id "Ledus.C8G007300"
Ledus.C8	AUGUSTUS	stop_codon	507042	507044	.	-	0	transcript_id "Ledus.C8G007300.t1"; gene_id "Ledus.C8G007300"
Ledus.C8	AUGUSTUS	CDS	507045	507148	0.77	-	2	transcript_id "Ledus.C8G007300.t1"; gene_id "Ledus.C8G007300"
Ledus.C8	AUGUSTUS	exon	507045	507148	.	-	.	transcript_id "Ledus.C8G007300.t1"; gene_id "Ledus.C8G007300"
Ledus.C8	AUGUSTUS	intron	507149	507488	.	-	.	transcript_id "Ledus.C8G007300.t1"; gene_id "Ledus.C8G007300"
Ledus.C8	AUGUSTUS	CDS	507489	507648	0.77	-	0	transcript_id "Ledus.C8G007300.t1"; gene_id "Ledus.C8G007300"
Ledus.C8	AUGUSTUS	exon	507489	507648	.	-	.	transcript_id "Ledus.C8G007300.t1"; gene_id "Ledus.C8G007300"
Ledus.C8	AUGUSTUS	start_codon	507646	507648	.	-	0	transcript_id "Ledus.C8G007300.t1"; gene_id "Ledus.C8G007300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5708.t1 is derived from g3147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26068852	26070396	.	-	.	Ledus.S1G312900
Ledus.S1	AUGUSTUS	transcript	26068852	26070396	.	-	.	transcript_id "Ledus.S1G312900.t1"; gene_id "Ledus.S1G312900"
Ledus.S1	AUGUSTUS	stop_codon	26068849	26068851	.	-	0	transcript_id "Ledus.S1G312900.t1"; gene_id "Ledus.S1G312900"
Ledus.S1	AUGUSTUS	CDS	26068852	26069385	0.97	-	0	transcript_id "Ledus.S1G312900.t1"; gene_id "Ledus.S1G312900"
Ledus.S1	AUGUSTUS	exon	26068852	26069385	.	-	.	transcript_id "Ledus.S1G312900.t1"; gene_id "Ledus.S1G312900"
Ledus.S1	AUGUSTUS	intron	26069386	26069559	.	-	.	transcript_id "Ledus.S1G312900.t1"; gene_id "Ledus.S1G312900"
Ledus.S1	AUGUSTUS	CDS	26069560	26070396	0.78	-	0	transcript_id "Ledus.S1G312900.t1"; gene_id "Ledus.S1G312900"
Ledus.S1	AUGUSTUS	exon	26069560	26070396	.	-	.	transcript_id "Ledus.S1G312900.t1"; gene_id "Ledus.S1G312900"
Ledus.S1	AUGUSTUS	start_codon	26070394	26070396	.	-	0	transcript_id "Ledus.S1G312900.t1"; gene_id "Ledus.S1G312900"
# This transcript jg5142.t2 is derived from g2581.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5143.t1 is derived from g2582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21929966	21931315	.	+	.	Ledus.S1G256400
Ledus.S1	AUGUSTUS	transcript	21929966	21931315	.	+	.	transcript_id "Ledus.S1G256400.t1"; gene_id "Ledus.S1G256400"
Ledus.S1	AUGUSTUS	start_codon	21929966	21929968	.	+	0	transcript_id "Ledus.S1G256400.t1"; gene_id "Ledus.S1G256400"
Ledus.S1	AUGUSTUS	CDS	21929966	21931315	1	+	0	transcript_id "Ledus.S1G256400.t1"; gene_id "Ledus.S1G256400"
Ledus.S1	AUGUSTUS	exon	21929966	21931315	.	+	.	transcript_id "Ledus.S1G256400.t1"; gene_id "Ledus.S1G256400"
Ledus.S1	AUGUSTUS	stop_codon	21931316	21931318	.	+	0	transcript_id "Ledus.S1G256400.t1"; gene_id "Ledus.S1G256400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10570.t1 is derived from g11600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16206988	16211980	.	+	.	Ledus.S3G204700
Ledus.S3	AUGUSTUS	transcript	16206988	16211980	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	start_codon	16206988	16206990	.	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16206988	16206990	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16206988	16206990	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16206991	16207139	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16207140	16207371	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16207140	16207371	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16207372	16207487	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16207488	16207567	1	+	2	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16207488	16207567	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16207568	16207764	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16207765	16207851	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16207765	16207851	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16207852	16207939	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16207940	16207990	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16207940	16207990	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16207991	16208117	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16208118	16208235	0.99	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16208118	16208235	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16208236	16208349	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16208350	16208406	1	+	2	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16208350	16208406	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16208407	16208530	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16208531	16208595	1	+	2	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16208531	16208595	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16208596	16208685	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16208686	16208769	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16208686	16208769	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16208770	16208891	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16208892	16208942	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16208892	16208942	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16208943	16209054	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16209055	16209117	0.84	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16209055	16209117	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16209118	16209221	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16209222	16209265	0.96	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16209222	16209265	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16209266	16209391	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16209392	16209461	1	+	1	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16209392	16209461	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16209462	16209602	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16209603	16209665	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16209603	16209665	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16209666	16210406	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16210407	16210496	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16210407	16210496	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16210497	16210593	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16210594	16210632	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16210594	16210632	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16210633	16210725	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16210726	16210875	0.99	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16210726	16210875	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16210876	16210976	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16210977	16211054	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16210977	16211054	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16211055	16211126	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16211127	16211212	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16211127	16211212	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16211213	16211308	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16211309	16211357	1	+	1	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16211309	16211357	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16211358	16211502	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16211503	16211583	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16211503	16211583	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16211584	16211667	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16211668	16211761	1	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16211668	16211761	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	intron	16211762	16211843	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	CDS	16211844	16211980	1	+	2	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	exon	16211844	16211980	.	+	.	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
Ledus.S3	AUGUSTUS	stop_codon	16211981	16211983	.	+	0	transcript_id "Ledus.S3G204700.t1"; gene_id "Ledus.S3G204700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2944.t1 is derived from g379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4777792	4778830	.	-	.	Ledus.S1G036500
Ledus.S1	AUGUSTUS	transcript	4777792	4778830	.	-	.	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	stop_codon	4777789	4777791	.	-	0	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	CDS	4777792	4777822	0.99	-	1	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	exon	4777792	4777822	.	-	.	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	intron	4777823	4777931	.	-	.	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	CDS	4777932	4778118	0.99	-	2	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	exon	4777932	4778118	.	-	.	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	intron	4778119	4778286	.	-	.	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	CDS	4778287	4778404	1	-	0	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	exon	4778287	4778404	.	-	.	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	intron	4778405	4778492	.	-	.	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	CDS	4778493	4778636	0.69	-	0	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	exon	4778493	4778636	.	-	.	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	intron	4778637	4778722	.	-	.	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	CDS	4778723	4778830	0.26	-	0	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	exon	4778723	4778830	.	-	.	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
Ledus.S1	AUGUSTUS	start_codon	4778828	4778830	.	-	0	transcript_id "Ledus.S1G036500.t1"; gene_id "Ledus.S1G036500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg822.t1 is derived from g7683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5322505	5322855	.	+	.	Ledus.S2G070400
Ledus.S2	AUGUSTUS	transcript	5322505	5322855	.	+	.	transcript_id "Ledus.S2G070400.t1"; gene_id "Ledus.S2G070400"
Ledus.S2	AUGUSTUS	start_codon	5322505	5322507	.	+	0	transcript_id "Ledus.S2G070400.t1"; gene_id "Ledus.S2G070400"
Ledus.S2	AUGUSTUS	CDS	5322505	5322855	0.96	+	0	transcript_id "Ledus.S2G070400.t1"; gene_id "Ledus.S2G070400"
Ledus.S2	AUGUSTUS	exon	5322505	5322855	.	+	.	transcript_id "Ledus.S2G070400.t1"; gene_id "Ledus.S2G070400"
Ledus.S2	AUGUSTUS	stop_codon	5322856	5322858	.	+	0	transcript_id "Ledus.S2G070400.t1"; gene_id "Ledus.S2G070400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6787.t1 is derived from g4231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34140616	34140927	.	+	.	Ledus.S1G420800
Ledus.S1	AUGUSTUS	transcript	34140616	34140927	.	+	.	transcript_id "Ledus.S1G420800.t1"; gene_id "Ledus.S1G420800"
Ledus.S1	AUGUSTUS	start_codon	34140616	34140618	.	+	0	transcript_id "Ledus.S1G420800.t1"; gene_id "Ledus.S1G420800"
Ledus.S1	AUGUSTUS	CDS	34140616	34140927	0.91	+	0	transcript_id "Ledus.S1G420800.t1"; gene_id "Ledus.S1G420800"
Ledus.S1	AUGUSTUS	exon	34140616	34140927	.	+	.	transcript_id "Ledus.S1G420800.t1"; gene_id "Ledus.S1G420800"
Ledus.S1	AUGUSTUS	stop_codon	34140928	34140930	.	+	0	transcript_id "Ledus.S1G420800.t1"; gene_id "Ledus.S1G420800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4116.t1 is derived from g1552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14777457	14779489	.	-	.	Ledus.S1G153700
Ledus.S1	AUGUSTUS	transcript	14777457	14779489	.	-	.	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	stop_codon	14777454	14777456	.	-	0	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	CDS	14777457	14777831	0.91	-	0	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	exon	14777457	14777831	.	-	.	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	intron	14777832	14778022	.	-	.	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	CDS	14778023	14778058	0.99	-	0	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	exon	14778023	14778058	.	-	.	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	intron	14778059	14778246	.	-	.	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	CDS	14778247	14778474	1	-	0	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	exon	14778247	14778474	.	-	.	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	intron	14778475	14779028	.	-	.	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	CDS	14779029	14779346	1	-	0	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	exon	14779029	14779346	.	-	.	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	intron	14779347	14779435	.	-	.	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	CDS	14779436	14779489	0.95	-	0	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	exon	14779436	14779489	.	-	.	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
Ledus.S1	AUGUSTUS	start_codon	14779487	14779489	.	-	0	transcript_id "Ledus.S1G153700.t1"; gene_id "Ledus.S1G153700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5782.t1 is derived from g3224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26732673	26735622	.	-	.	Ledus.S1G320300
Ledus.S1	AUGUSTUS	transcript	26732673	26735622	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	stop_codon	26732670	26732672	.	-	0	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	CDS	26732673	26732727	0.97	-	1	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	exon	26732673	26732727	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	intron	26732728	26732817	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	CDS	26732818	26732928	1	-	1	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	exon	26732818	26732928	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	intron	26732929	26733032	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	CDS	26733033	26733190	1	-	0	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	exon	26733033	26733190	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	intron	26733191	26733281	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	CDS	26733282	26733464	0.9	-	0	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	exon	26733282	26733464	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	intron	26733465	26733569	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	CDS	26733570	26733997	0.87	-	2	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	exon	26733570	26733997	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	intron	26733998	26734165	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	CDS	26734166	26734820	0.95	-	0	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	exon	26734166	26734820	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	intron	26734821	26735475	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	CDS	26735476	26735622	0.95	-	0	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	exon	26735476	26735622	.	-	.	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
Ledus.S1	AUGUSTUS	start_codon	26735620	26735622	.	-	0	transcript_id "Ledus.S1G320300.t1"; gene_id "Ledus.S1G320300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8984.t1 is derived from g10014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3673597	3674371	.	-	.	Ledus.S3G046100
Ledus.S3	AUGUSTUS	transcript	3673597	3674371	.	-	.	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	stop_codon	3673594	3673596	.	-	0	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	CDS	3673597	3673847	0.54	-	2	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	exon	3673597	3673847	.	-	.	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	intron	3673848	3673937	.	-	.	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	CDS	3673938	3674012	0.87	-	2	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	exon	3673938	3674012	.	-	.	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	intron	3674013	3674084	.	-	.	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	CDS	3674085	3674183	1	-	2	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	exon	3674085	3674183	.	-	.	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	intron	3674184	3674274	.	-	.	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	CDS	3674275	3674371	1	-	0	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	exon	3674275	3674371	.	-	.	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
Ledus.S3	AUGUSTUS	start_codon	3674369	3674371	.	-	0	transcript_id "Ledus.S3G046100.t1"; gene_id "Ledus.S3G046100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6587.t1 is derived from g4030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32531074	32533191	.	-	.	Ledus.S1G400800
Ledus.S1	AUGUSTUS	transcript	32531074	32533191	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	stop_codon	32531071	32531073	.	-	0	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	CDS	32531074	32531262	0.99	-	0	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	exon	32531074	32531262	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	intron	32531263	32531414	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	CDS	32531415	32531582	1	-	0	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	exon	32531415	32531582	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	intron	32531583	32531693	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	CDS	32531694	32531810	0.99	-	0	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	exon	32531694	32531810	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	intron	32531811	32531950	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	CDS	32531951	32532090	1	-	2	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	exon	32531951	32532090	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	intron	32532091	32532246	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	CDS	32532247	32532558	1	-	2	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	exon	32532247	32532558	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	intron	32532559	32532735	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	CDS	32532736	32532814	1	-	0	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	exon	32532736	32532814	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	intron	32532815	32532951	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	CDS	32532952	32533191	1	-	0	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	exon	32532952	32533191	.	-	.	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
Ledus.S1	AUGUSTUS	start_codon	32533189	32533191	.	-	0	transcript_id "Ledus.S1G400800.t1"; gene_id "Ledus.S1G400800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5889.t1 is derived from g3331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27602459	27604025	.	-	.	Ledus.S1G331000
Ledus.S1	AUGUSTUS	transcript	27602459	27604025	.	-	.	transcript_id "Ledus.S1G331000.t1"; gene_id "Ledus.S1G331000"
Ledus.S1	AUGUSTUS	stop_codon	27602456	27602458	.	-	0	transcript_id "Ledus.S1G331000.t1"; gene_id "Ledus.S1G331000"
Ledus.S1	AUGUSTUS	CDS	27602459	27603478	0.96	-	0	transcript_id "Ledus.S1G331000.t1"; gene_id "Ledus.S1G331000"
Ledus.S1	AUGUSTUS	exon	27602459	27603478	.	-	.	transcript_id "Ledus.S1G331000.t1"; gene_id "Ledus.S1G331000"
Ledus.S1	AUGUSTUS	intron	27603479	27603554	.	-	.	transcript_id "Ledus.S1G331000.t1"; gene_id "Ledus.S1G331000"
Ledus.S1	AUGUSTUS	CDS	27603555	27603731	0.92	-	0	transcript_id "Ledus.S1G331000.t1"; gene_id "Ledus.S1G331000"
Ledus.S1	AUGUSTUS	exon	27603555	27603731	.	-	.	transcript_id "Ledus.S1G331000.t1"; gene_id "Ledus.S1G331000"
Ledus.S1	AUGUSTUS	intron	27603732	27603812	.	-	.	transcript_id "Ledus.S1G331000.t1"; gene_id "Ledus.S1G331000"
Ledus.S1	AUGUSTUS	CDS	27603813	27604025	0.97	-	0	transcript_id "Ledus.S1G331000.t1"; gene_id "Ledus.S1G331000"
Ledus.S1	AUGUSTUS	exon	27603813	27604025	.	-	.	transcript_id "Ledus.S1G331000.t1"; gene_id "Ledus.S1G331000"
Ledus.S1	AUGUSTUS	start_codon	27604023	27604025	.	-	0	transcript_id "Ledus.S1G331000.t1"; gene_id "Ledus.S1G331000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12059.t1 is derived from g5678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9266388	9268928	.	+	.	Ledus.S4G121500
Ledus.S4	AUGUSTUS	transcript	9266388	9268928	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	start_codon	9266388	9266390	.	+	0	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	CDS	9266388	9266511	0.75	+	0	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	exon	9266388	9266511	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	intron	9266512	9266618	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	CDS	9266619	9266675	0.97	+	2	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	exon	9266619	9266675	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	intron	9266676	9266937	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	CDS	9266938	9267028	1	+	2	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	exon	9266938	9267028	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	intron	9267029	9267258	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	CDS	9267259	9267419	1	+	1	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	exon	9267259	9267419	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	intron	9267420	9267660	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	CDS	9267661	9267788	1	+	2	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	exon	9267661	9267788	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	intron	9267789	9268026	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	CDS	9268027	9268164	1	+	0	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	exon	9268027	9268164	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	intron	9268165	9268328	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	CDS	9268329	9268421	1	+	0	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	exon	9268329	9268421	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	intron	9268422	9268506	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	CDS	9268507	9268627	1	+	0	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	exon	9268507	9268627	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	intron	9268628	9268791	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	CDS	9268792	9268928	0.83	+	2	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	exon	9268792	9268928	.	+	.	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
Ledus.S4	AUGUSTUS	stop_codon	9268929	9268931	.	+	0	transcript_id "Ledus.S4G121500.t1"; gene_id "Ledus.S4G121500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12529.t1 is derived from g6150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12744281	12744487	.	-	.	Ledus.S4G168500
Ledus.S4	AUGUSTUS	transcript	12744281	12744487	.	-	.	transcript_id "Ledus.S4G168500.t1"; gene_id "Ledus.S4G168500"
Ledus.S4	AUGUSTUS	stop_codon	12744278	12744280	.	-	0	transcript_id "Ledus.S4G168500.t1"; gene_id "Ledus.S4G168500"
Ledus.S4	AUGUSTUS	CDS	12744281	12744487	0.91	-	0	transcript_id "Ledus.S4G168500.t1"; gene_id "Ledus.S4G168500"
Ledus.S4	AUGUSTUS	exon	12744281	12744487	.	-	.	transcript_id "Ledus.S4G168500.t1"; gene_id "Ledus.S4G168500"
Ledus.S4	AUGUSTUS	start_codon	12744485	12744487	.	-	0	transcript_id "Ledus.S4G168500.t1"; gene_id "Ledus.S4G168500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1083.t1 is derived from g7944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7324380	7336196	.	+	.	Ledus.S2G096500
Ledus.S2	AUGUSTUS	transcript	7324380	7336196	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	start_codon	7324380	7324382	.	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7324380	7324422	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7324380	7324422	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7324423	7324513	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7324514	7324604	1	+	2	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7324514	7324604	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7324605	7324711	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7324712	7324766	1	+	1	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7324712	7324766	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7324767	7324868	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7324869	7325012	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7324869	7325012	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7325013	7325145	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7325146	7325217	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7325146	7325217	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7325218	7325397	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7325398	7325488	0.75	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7325398	7325488	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7325489	7325609	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7325610	7325705	0.73	+	2	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7325610	7325705	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7325706	7325863	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7325864	7325942	1	+	2	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7325864	7325942	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7325943	7326080	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7326081	7326144	1	+	1	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7326081	7326144	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7326145	7326273	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7326274	7326377	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7326274	7326377	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7326378	7326496	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7326497	7326602	1	+	1	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7326497	7326602	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7326603	7326699	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7326700	7326789	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7326700	7326789	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7326790	7326899	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7326900	7326977	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7326900	7326977	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7326978	7327131	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7327132	7327199	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7327132	7327199	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7327200	7327309	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7327310	7327409	1	+	1	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7327310	7327409	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7327410	7327501	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7327502	7327678	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7327502	7327678	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7327679	7327835	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7327836	7327925	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7327836	7327925	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7327926	7328174	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7328175	7328240	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7328175	7328240	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7328241	7328401	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7328402	7328500	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7328402	7328500	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7328501	7328785	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7328786	7328860	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7328786	7328860	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7328861	7328990	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7328991	7329050	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7328991	7329050	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7329051	7329231	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7329232	7329321	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7329232	7329321	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7329322	7329519	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7329520	7329641	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7329520	7329641	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7329642	7329718	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7329719	7329848	0.65	+	1	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7329719	7329848	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7329849	7329965	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7329966	7330045	0.5	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7329966	7330045	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7330046	7330149	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7330150	7330285	0.94	+	1	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7330150	7330285	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7330286	7330396	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7330397	7330478	0.97	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7330397	7330478	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7330479	7330581	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7330582	7330739	0.73	+	2	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7330582	7330739	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7330740	7330902	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7330903	7330983	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7330903	7330983	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7330984	7331089	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7331090	7331190	0.98	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7331090	7331190	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7331191	7331309	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7331310	7331539	0.92	+	1	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7331310	7331539	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7331540	7331623	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7331624	7331733	1	+	2	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7331624	7331733	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7331734	7331898	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7331899	7332024	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7331899	7332024	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7332025	7332177	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7332178	7332252	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7332178	7332252	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7332253	7332332	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7332333	7332466	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7332333	7332466	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7332467	7332562	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7332563	7332635	1	+	1	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7332563	7332635	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7332636	7332932	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7332933	7333064	0.55	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7332933	7333064	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7333065	7333165	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7333166	7333350	0.53	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7333166	7333350	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7333351	7333459	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7333460	7333579	1	+	1	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7333460	7333579	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7333580	7333763	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7333764	7333824	1	+	1	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7333764	7333824	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7333825	7334034	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7334035	7334133	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7334035	7334133	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7334134	7334226	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7334227	7334327	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7334227	7334327	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7334328	7334478	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7334479	7334584	1	+	1	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7334479	7334584	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7334585	7334725	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7334726	7334839	0.81	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7334726	7334839	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7334840	7335120	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7335121	7335219	0.77	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7335121	7335219	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7335220	7335333	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7335334	7335405	0.78	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7335334	7335405	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7335406	7335519	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7335520	7335605	0.9	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7335520	7335605	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7335606	7335698	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7335699	7335792	1	+	1	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7335699	7335792	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7335793	7335886	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7335887	7335994	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7335887	7335994	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	intron	7335995	7336085	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	CDS	7336086	7336196	1	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	exon	7336086	7336196	.	+	.	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
Ledus.S2	AUGUSTUS	stop_codon	7336197	7336199	.	+	0	transcript_id "Ledus.S2G096500.t1"; gene_id "Ledus.S2G096500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5646.t1 is derived from g3085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25561660	25562825	.	-	.	Ledus.S1G306700
Ledus.S1	AUGUSTUS	transcript	25561660	25562825	.	-	.	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	stop_codon	25561657	25561659	.	-	0	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	CDS	25561660	25561794	1	-	0	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	exon	25561660	25561794	.	-	.	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	intron	25561795	25561906	.	-	.	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	CDS	25561907	25561975	1	-	0	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	exon	25561907	25561975	.	-	.	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	intron	25561976	25562060	.	-	.	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	CDS	25562061	25562126	1	-	0	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	exon	25562061	25562126	.	-	.	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	intron	25562127	25562222	.	-	.	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	CDS	25562223	25562312	1	-	0	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	exon	25562223	25562312	.	-	.	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	intron	25562313	25562416	.	-	.	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	CDS	25562417	25562513	0.88	-	1	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	exon	25562417	25562513	.	-	.	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	intron	25562514	25562610	.	-	.	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	CDS	25562611	25562825	0.94	-	0	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	exon	25562611	25562825	.	-	.	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
Ledus.S1	AUGUSTUS	start_codon	25562823	25562825	.	-	0	transcript_id "Ledus.S1G306700.t1"; gene_id "Ledus.S1G306700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1677.t1 is derived from g8538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11802413	11804410	.	+	.	Ledus.S2G155900
Ledus.S2	AUGUSTUS	transcript	11802413	11804410	.	+	.	transcript_id "Ledus.S2G155900.t1"; gene_id "Ledus.S2G155900"
Ledus.S2	AUGUSTUS	start_codon	11802413	11802415	.	+	0	transcript_id "Ledus.S2G155900.t1"; gene_id "Ledus.S2G155900"
Ledus.S2	AUGUSTUS	CDS	11802413	11804410	1	+	0	transcript_id "Ledus.S2G155900.t1"; gene_id "Ledus.S2G155900"
Ledus.S2	AUGUSTUS	exon	11802413	11804410	.	+	.	transcript_id "Ledus.S2G155900.t1"; gene_id "Ledus.S2G155900"
Ledus.S2	AUGUSTUS	stop_codon	11804411	11804413	.	+	0	transcript_id "Ledus.S2G155900.t1"; gene_id "Ledus.S2G155900"
Ledus.S2	AUGUSTUS	transcript	11803328	11804410	.	+	.	transcript_id "Ledus.S2G155900.t2"; gene_id "Ledus.S2G155900"
Ledus.S2	AUGUSTUS	start_codon	11803328	11803330	.	+	0	transcript_id "Ledus.S2G155900.t2"; gene_id "Ledus.S2G155900"
Ledus.S2	AUGUSTUS	CDS	11803328	11804410	0.98	+	0	transcript_id "Ledus.S2G155900.t2"; gene_id "Ledus.S2G155900"
Ledus.S2	AUGUSTUS	exon	11803328	11804410	.	+	.	transcript_id "Ledus.S2G155900.t2"; gene_id "Ledus.S2G155900"
Ledus.S2	AUGUSTUS	stop_codon	11804411	11804413	.	+	0	transcript_id "Ledus.S2G155900.t2"; gene_id "Ledus.S2G155900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6278.t1 is derived from g3721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30097329	30100372	.	-	.	Ledus.S1G369900
Ledus.S1	AUGUSTUS	transcript	30097329	30100372	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	stop_codon	30097326	30097328	.	-	0	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30097329	30097437	0.99	-	1	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30097329	30097437	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30097438	30097526	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30097527	30097576	1	-	0	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30097527	30097576	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30097577	30097668	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30097669	30097791	1	-	0	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30097669	30097791	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30097792	30097884	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30097885	30098043	1	-	0	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30097885	30098043	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30098044	30098142	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30098143	30098196	1	-	0	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30098143	30098196	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30098197	30098344	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30098345	30098447	1	-	1	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30098345	30098447	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30098448	30098546	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30098547	30098596	1	-	0	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30098547	30098596	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30098597	30098711	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30098712	30098822	0.99	-	0	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30098712	30098822	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30098823	30098996	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30098997	30099092	1	-	0	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30098997	30099092	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30099093	30099180	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30099181	30099270	1	-	0	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30099181	30099270	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30099271	30099383	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30099384	30099653	0.93	-	0	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30099384	30099653	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30099654	30099765	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30099766	30099851	0.51	-	2	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30099766	30099851	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30099852	30100024	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30100025	30100033	0.72	-	2	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30100025	30100033	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30100034	30100199	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30100200	30100258	0.98	-	1	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30100200	30100258	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	intron	30100259	30100361	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	CDS	30100362	30100372	0.98	-	0	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	exon	30100362	30100372	.	-	.	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
Ledus.S1	AUGUSTUS	start_codon	30100370	30100372	.	-	0	transcript_id "Ledus.S1G369900.t1"; gene_id "Ledus.S1G369900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10628.t1 is derived from g11658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16582068	16583555	.	+	.	Ledus.S3G210500
Ledus.S3	AUGUSTUS	transcript	16582068	16583555	.	+	.	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	start_codon	16582068	16582070	.	+	0	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	CDS	16582068	16582244	1	+	0	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	exon	16582068	16582244	.	+	.	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	intron	16582245	16582351	.	+	.	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	CDS	16582352	16582522	0.99	+	0	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	exon	16582352	16582522	.	+	.	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	intron	16582523	16582605	.	+	.	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	CDS	16582606	16582785	1	+	0	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	exon	16582606	16582785	.	+	.	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	intron	16582786	16582877	.	+	.	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	CDS	16582878	16583555	0.86	+	0	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	exon	16582878	16583555	.	+	.	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
Ledus.S3	AUGUSTUS	stop_codon	16583556	16583558	.	+	0	transcript_id "Ledus.S3G210500.t1"; gene_id "Ledus.S3G210500"
# This transcript jg4707.t2 is derived from g2145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4708.t1 is derived from g2146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19145980	19147662	.	-	.	Ledus.S1G212900
Ledus.S1	AUGUSTUS	transcript	19145980	19147662	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	stop_codon	19145977	19145979	.	-	0	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	CDS	19145980	19146144	1	-	0	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	exon	19145980	19146144	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	intron	19146145	19146243	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	CDS	19146244	19146351	1	-	0	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	exon	19146244	19146351	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	intron	19146352	19146424	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	CDS	19146425	19146577	1	-	0	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	exon	19146425	19146577	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	intron	19146578	19146736	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	CDS	19146737	19146849	0.99	-	2	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	exon	19146737	19146849	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	intron	19146850	19146952	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	CDS	19146953	19147061	1	-	0	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	exon	19146953	19147061	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	intron	19147062	19147155	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	CDS	19147156	19147217	1	-	2	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	exon	19147156	19147217	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	intron	19147218	19147337	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	CDS	19147338	19147409	1	-	2	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	exon	19147338	19147409	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	intron	19147410	19147595	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	CDS	19147596	19147662	1	-	0	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	exon	19147596	19147662	.	-	.	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
Ledus.S1	AUGUSTUS	start_codon	19147660	19147662	.	-	0	transcript_id "Ledus.S1G212900.t1"; gene_id "Ledus.S1G212900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2567.t1 is derived from g9430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19010538	19014289	.	-	.	Ledus.S2G244900
Ledus.S2	AUGUSTUS	transcript	19010538	19014289	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	stop_codon	19010535	19010537	.	-	0	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19010538	19010799	0.66	-	1	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19010538	19010799	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19010800	19010945	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19010946	19011393	0.73	-	2	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19010946	19011393	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19011394	19011551	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19011552	19011639	0.81	-	0	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19011552	19011639	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19011640	19011741	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19011742	19011891	0.87	-	0	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19011742	19011891	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19011892	19012016	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19012017	19012094	1	-	0	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19012017	19012094	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19012095	19012229	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19012230	19012349	1	-	0	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19012230	19012349	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19012350	19012448	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19012449	19012520	1	-	0	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19012449	19012520	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19012521	19012615	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19012616	19012734	0.99	-	2	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19012616	19012734	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19012735	19012838	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19012839	19012911	0.97	-	0	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19012839	19012911	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19012912	19013063	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19013064	19013135	1	-	0	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19013064	19013135	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19013136	19013281	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19013282	19013359	1	-	0	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19013282	19013359	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19013360	19013457	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19013458	19013531	1	-	2	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19013458	19013531	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19013532	19013654	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19013655	19013740	1	-	1	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19013655	19013740	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19013741	19013832	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19013833	19013950	1	-	2	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19013833	19013950	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19013951	19014032	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19014033	19014146	1	-	2	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19014033	19014146	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	intron	19014147	19014228	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	CDS	19014229	19014289	0.95	-	0	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	exon	19014229	19014289	.	-	.	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
Ledus.S2	AUGUSTUS	start_codon	19014287	19014289	.	-	0	transcript_id "Ledus.S2G244900.t1"; gene_id "Ledus.S2G244900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5553.t1 is derived from g2992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25083796	25085361	.	-	.	Ledus.S1G297400
Ledus.S1	AUGUSTUS	transcript	25083796	25085361	.	-	.	transcript_id "Ledus.S1G297400.t1"; gene_id "Ledus.S1G297400"
Ledus.S1	AUGUSTUS	stop_codon	25083793	25083795	.	-	0	transcript_id "Ledus.S1G297400.t1"; gene_id "Ledus.S1G297400"
Ledus.S1	AUGUSTUS	CDS	25083796	25083856	0.98	-	1	transcript_id "Ledus.S1G297400.t1"; gene_id "Ledus.S1G297400"
Ledus.S1	AUGUSTUS	exon	25083796	25083856	.	-	.	transcript_id "Ledus.S1G297400.t1"; gene_id "Ledus.S1G297400"
Ledus.S1	AUGUSTUS	intron	25083857	25083940	.	-	.	transcript_id "Ledus.S1G297400.t1"; gene_id "Ledus.S1G297400"
Ledus.S1	AUGUSTUS	CDS	25083941	25085361	1	-	0	transcript_id "Ledus.S1G297400.t1"; gene_id "Ledus.S1G297400"
Ledus.S1	AUGUSTUS	exon	25083941	25085361	.	-	.	transcript_id "Ledus.S1G297400.t1"; gene_id "Ledus.S1G297400"
Ledus.S1	AUGUSTUS	start_codon	25085359	25085361	.	-	0	transcript_id "Ledus.S1G297400.t1"; gene_id "Ledus.S1G297400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg13049.t1 is derived from g6859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4155325	4158349	.	+	.	Ledus.S6G011100
Ledus.S6	AUGUSTUS	transcript	4155325	4158349	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	start_codon	4155325	4155327	.	+	0	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4155325	4155426	0.96	+	0	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4155325	4155426	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4155427	4155822	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4155823	4155992	1	+	0	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4155823	4155992	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4155993	4156122	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4156123	4156206	1	+	1	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4156123	4156206	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4156207	4156307	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4156308	4156509	0.95	+	1	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4156308	4156509	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4156510	4156678	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4156679	4156756	1	+	0	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4156679	4156756	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4156757	4156943	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4156944	4157012	1	+	0	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4156944	4157012	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4157013	4157145	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4157146	4157289	1	+	0	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4157146	4157289	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4157290	4157431	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4157432	4157540	1	+	0	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4157432	4157540	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4157541	4157802	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4157803	4158023	0.98	+	2	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4157803	4158023	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4158024	4158150	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4158151	4158226	0.86	+	0	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4158151	4158226	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4158227	4158323	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4158324	4158349	0.8	+	2	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4158324	4158349	.	+	.	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	stop_codon	4158350	4158352	.	+	0	transcript_id "Ledus.S6G011100.t1"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	transcript	4155325	4158349	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	start_codon	4155325	4155327	.	+	0	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4155325	4155426	0.96	+	0	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4155325	4155426	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4155427	4155822	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4155823	4155992	1	+	0	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4155823	4155992	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4155993	4156122	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4156123	4156206	1	+	1	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4156123	4156206	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4156207	4156307	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4156308	4156509	0.93	+	1	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4156308	4156509	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4156510	4156678	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4156679	4156771	1	+	0	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4156679	4156771	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4156772	4156943	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4156944	4157012	1	+	0	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4156944	4157012	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4157013	4157145	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4157146	4157289	1	+	0	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4157146	4157289	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4157290	4157431	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4157432	4157540	1	+	0	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4157432	4157540	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4157541	4157802	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4157803	4158023	1	+	2	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4157803	4158023	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4158024	4158150	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4158151	4158226	0.87	+	0	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4158151	4158226	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	intron	4158227	4158323	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	CDS	4158324	4158349	0.66	+	2	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	exon	4158324	4158349	.	+	.	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
Ledus.S6	AUGUSTUS	stop_codon	4158350	4158352	.	+	0	transcript_id "Ledus.S6G011100.t2"; gene_id "Ledus.S6G011100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11250.t1 is derived from g4868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2944894	2948577	.	+	.	Ledus.S4G040600
Ledus.S4	AUGUSTUS	transcript	2944894	2948577	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	start_codon	2944894	2944896	.	+	0	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	CDS	2944894	2944968	0.68	+	0	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	exon	2944894	2944968	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	intron	2944969	2945090	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	CDS	2945091	2945176	0.71	+	0	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	exon	2945091	2945176	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	intron	2945177	2945263	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	CDS	2945264	2945394	0.78	+	1	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	exon	2945264	2945394	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	intron	2945395	2945554	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	CDS	2945555	2945683	1	+	2	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	exon	2945555	2945683	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	intron	2945684	2945779	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	CDS	2945780	2946327	0.58	+	2	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	exon	2945780	2946327	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	intron	2946328	2946460	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	CDS	2946461	2946740	0.93	+	0	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	exon	2946461	2946740	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	intron	2946741	2946825	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	CDS	2946826	2947413	1	+	2	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	exon	2946826	2947413	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	intron	2947414	2947538	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	CDS	2947539	2947742	1	+	2	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	exon	2947539	2947742	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	intron	2947743	2947847	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	CDS	2947848	2948110	1	+	2	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	exon	2947848	2948110	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	intron	2948111	2948199	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	CDS	2948200	2948577	0.99	+	0	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	exon	2948200	2948577	.	+	.	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
Ledus.S4	AUGUSTUS	stop_codon	2948578	2948580	.	+	0	transcript_id "Ledus.S4G040600.t1"; gene_id "Ledus.S4G040600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1569.t1 is derived from g8430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10976296	10979061	.	-	.	Ledus.S2G145100
Ledus.S2	AUGUSTUS	transcript	10976296	10979061	.	-	.	transcript_id "Ledus.S2G145100.t1"; gene_id "Ledus.S2G145100"
Ledus.S2	AUGUSTUS	stop_codon	10976293	10976295	.	-	0	transcript_id "Ledus.S2G145100.t1"; gene_id "Ledus.S2G145100"
Ledus.S2	AUGUSTUS	CDS	10976296	10979061	1	-	0	transcript_id "Ledus.S2G145100.t1"; gene_id "Ledus.S2G145100"
Ledus.S2	AUGUSTUS	exon	10976296	10979061	.	-	.	transcript_id "Ledus.S2G145100.t1"; gene_id "Ledus.S2G145100"
Ledus.S2	AUGUSTUS	start_codon	10979059	10979061	.	-	0	transcript_id "Ledus.S2G145100.t1"; gene_id "Ledus.S2G145100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10154.t1 is derived from g11184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13367431	13367727	.	-	.	Ledus.S3G163100
Ledus.S3	AUGUSTUS	transcript	13367431	13367727	.	-	.	transcript_id "Ledus.S3G163100.t1"; gene_id "Ledus.S3G163100"
Ledus.S3	AUGUSTUS	stop_codon	13367428	13367430	.	-	0	transcript_id "Ledus.S3G163100.t1"; gene_id "Ledus.S3G163100"
Ledus.S3	AUGUSTUS	CDS	13367431	13367727	0.84	-	0	transcript_id "Ledus.S3G163100.t1"; gene_id "Ledus.S3G163100"
Ledus.S3	AUGUSTUS	exon	13367431	13367727	.	-	.	transcript_id "Ledus.S3G163100.t1"; gene_id "Ledus.S3G163100"
Ledus.S3	AUGUSTUS	start_codon	13367725	13367727	.	-	0	transcript_id "Ledus.S3G163100.t1"; gene_id "Ledus.S3G163100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg389.t1 is derived from g7250.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2177762	2179515	.	+	.	Ledus.S2G027100
Ledus.S2	AUGUSTUS	transcript	2177762	2179515	.	+	.	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	start_codon	2177762	2177764	.	+	0	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	CDS	2177762	2177842	0.65	+	0	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	exon	2177762	2177842	.	+	.	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	intron	2177843	2177944	.	+	.	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	CDS	2177945	2178178	0.26	+	0	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	exon	2177945	2178178	.	+	.	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	intron	2178179	2178529	.	+	.	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	CDS	2178530	2179003	0.36	+	0	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	exon	2178530	2179003	.	+	.	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	intron	2179004	2179236	.	+	.	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	CDS	2179237	2179515	0.32	+	0	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	exon	2179237	2179515	.	+	.	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
Ledus.S2	AUGUSTUS	stop_codon	2179516	2179518	.	+	0	transcript_id "Ledus.S2G027100.t1"; gene_id "Ledus.S2G027100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5560.t1 is derived from g2999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25138618	25142616	.	-	.	Ledus.S1G298100
Ledus.S1	AUGUSTUS	transcript	25138618	25142616	.	-	.	transcript_id "Ledus.S1G298100.t1"; gene_id "Ledus.S1G298100"
Ledus.S1	AUGUSTUS	stop_codon	25138615	25138617	.	-	0	transcript_id "Ledus.S1G298100.t1"; gene_id "Ledus.S1G298100"
Ledus.S1	AUGUSTUS	CDS	25138618	25138826	1	-	2	transcript_id "Ledus.S1G298100.t1"; gene_id "Ledus.S1G298100"
Ledus.S1	AUGUSTUS	exon	25138618	25138826	.	-	.	transcript_id "Ledus.S1G298100.t1"; gene_id "Ledus.S1G298100"
Ledus.S1	AUGUSTUS	intron	25138827	25138946	.	-	.	transcript_id "Ledus.S1G298100.t1"; gene_id "Ledus.S1G298100"
Ledus.S1	AUGUSTUS	CDS	25138947	25142616	0.77	-	0	transcript_id "Ledus.S1G298100.t1"; gene_id "Ledus.S1G298100"
Ledus.S1	AUGUSTUS	exon	25138947	25142616	.	-	.	transcript_id "Ledus.S1G298100.t1"; gene_id "Ledus.S1G298100"
Ledus.S1	AUGUSTUS	start_codon	25142614	25142616	.	-	0	transcript_id "Ledus.S1G298100.t1"; gene_id "Ledus.S1G298100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2343.t1 is derived from g9206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17363369	17363891	.	-	.	Ledus.S2G222500
Ledus.S2	AUGUSTUS	transcript	17363369	17363891	.	-	.	transcript_id "Ledus.S2G222500.t1"; gene_id "Ledus.S2G222500"
Ledus.S2	AUGUSTUS	stop_codon	17363366	17363368	.	-	0	transcript_id "Ledus.S2G222500.t1"; gene_id "Ledus.S2G222500"
Ledus.S2	AUGUSTUS	CDS	17363369	17363545	1	-	0	transcript_id "Ledus.S2G222500.t1"; gene_id "Ledus.S2G222500"
Ledus.S2	AUGUSTUS	exon	17363369	17363545	.	-	.	transcript_id "Ledus.S2G222500.t1"; gene_id "Ledus.S2G222500"
Ledus.S2	AUGUSTUS	intron	17363546	17363642	.	-	.	transcript_id "Ledus.S2G222500.t1"; gene_id "Ledus.S2G222500"
Ledus.S2	AUGUSTUS	CDS	17363643	17363891	0.95	-	0	transcript_id "Ledus.S2G222500.t1"; gene_id "Ledus.S2G222500"
Ledus.S2	AUGUSTUS	exon	17363643	17363891	.	-	.	transcript_id "Ledus.S2G222500.t1"; gene_id "Ledus.S2G222500"
Ledus.S2	AUGUSTUS	start_codon	17363889	17363891	.	-	0	transcript_id "Ledus.S2G222500.t1"; gene_id "Ledus.S2G222500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4462.t1 is derived from g1898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17193445	17196453	.	-	.	Ledus.S1G188300
Ledus.S1	AUGUSTUS	transcript	17193445	17194089	.	-	.	transcript_id "Ledus.S1G188300.t1"; gene_id "Ledus.S1G188300"
Ledus.S1	AUGUSTUS	stop_codon	17193442	17193444	.	-	0	transcript_id "Ledus.S1G188300.t1"; gene_id "Ledus.S1G188300"
Ledus.S1	AUGUSTUS	CDS	17193445	17194089	0.99	-	0	transcript_id "Ledus.S1G188300.t1"; gene_id "Ledus.S1G188300"
Ledus.S1	AUGUSTUS	exon	17193445	17194089	.	-	.	transcript_id "Ledus.S1G188300.t1"; gene_id "Ledus.S1G188300"
Ledus.S1	AUGUSTUS	start_codon	17194087	17194089	.	-	0	transcript_id "Ledus.S1G188300.t1"; gene_id "Ledus.S1G188300"
Ledus.S1	AUGUSTUS	transcript	17193445	17196453	.	-	.	transcript_id "Ledus.S1G188300.t2"; gene_id "Ledus.S1G188300"
Ledus.S1	AUGUSTUS	stop_codon	17193442	17193444	.	-	0	transcript_id "Ledus.S1G188300.t2"; gene_id "Ledus.S1G188300"
Ledus.S1	AUGUSTUS	CDS	17193445	17196453	0.97	-	0	transcript_id "Ledus.S1G188300.t2"; gene_id "Ledus.S1G188300"
Ledus.S1	AUGUSTUS	exon	17193445	17196453	.	-	.	transcript_id "Ledus.S1G188300.t2"; gene_id "Ledus.S1G188300"
Ledus.S1	AUGUSTUS	start_codon	17196451	17196453	.	-	0	transcript_id "Ledus.S1G188300.t2"; gene_id "Ledus.S1G188300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg508.t1 is derived from g7369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2980851	2981204	.	+	.	Ledus.S2G039000
Ledus.S2	AUGUSTUS	transcript	2980851	2981204	.	+	.	transcript_id "Ledus.S2G039000.t1"; gene_id "Ledus.S2G039000"
Ledus.S2	AUGUSTUS	start_codon	2980851	2980853	.	+	0	transcript_id "Ledus.S2G039000.t1"; gene_id "Ledus.S2G039000"
Ledus.S2	AUGUSTUS	CDS	2980851	2981204	0.99	+	0	transcript_id "Ledus.S2G039000.t1"; gene_id "Ledus.S2G039000"
Ledus.S2	AUGUSTUS	exon	2980851	2981204	.	+	.	transcript_id "Ledus.S2G039000.t1"; gene_id "Ledus.S2G039000"
Ledus.S2	AUGUSTUS	stop_codon	2981205	2981207	.	+	0	transcript_id "Ledus.S2G039000.t1"; gene_id "Ledus.S2G039000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11189.t1 is derived from g4807.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2533483	2536382	.	-	.	Ledus.S4G034500
Ledus.S4	AUGUSTUS	transcript	2533483	2536382	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	stop_codon	2533480	2533482	.	-	0	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2533483	2533587	0.62	-	0	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2533483	2533587	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	intron	2533588	2533684	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2533685	2533798	0.3	-	0	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2533685	2533798	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	intron	2533799	2534178	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2534179	2535530	0.31	-	2	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2534179	2535530	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	intron	2535531	2535616	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2535617	2535850	0.99	-	2	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2535617	2535850	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	intron	2535851	2536007	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2536008	2536018	0.95	-	1	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2536008	2536018	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	intron	2536019	2536156	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2536157	2536216	0.82	-	1	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2536157	2536216	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	intron	2536217	2536347	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2536348	2536382	0.66	-	0	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2536348	2536382	.	-	.	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	start_codon	2536380	2536382	.	-	0	transcript_id "Ledus.S4G034500.t1"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	transcript	2533483	2536382	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	stop_codon	2533480	2533482	.	-	0	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2533483	2533587	0.62	-	0	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2533483	2533587	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	intron	2533588	2533684	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2533685	2533798	0.32	-	0	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2533685	2533798	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	intron	2533799	2534178	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2534179	2535530	0.32	-	2	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2534179	2535530	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	intron	2535531	2535616	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2535617	2535860	0.96	-	0	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2535617	2535860	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	intron	2535861	2536007	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2536008	2536050	0.87	-	1	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2536008	2536050	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	intron	2536051	2536156	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2536157	2536216	0.63	-	1	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2536157	2536216	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	intron	2536217	2536347	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	CDS	2536348	2536382	0.63	-	0	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	exon	2536348	2536382	.	-	.	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
Ledus.S4	AUGUSTUS	start_codon	2536380	2536382	.	-	0	transcript_id "Ledus.S4G034500.t2"; gene_id "Ledus.S4G034500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2125.t1 is derived from g8988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14842249	14847771	.	+	.	Ledus.S2G200700
Ledus.S2	AUGUSTUS	transcript	14842249	14847771	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	start_codon	14842249	14842251	.	+	0	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14842249	14842453	0.44	+	0	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14842249	14842453	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14842454	14842600	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14842601	14842707	0.98	+	2	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14842601	14842707	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14842708	14842817	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14842818	14843013	1	+	0	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14842818	14843013	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14843014	14843186	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14843187	14843407	1	+	2	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14843187	14843407	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14843408	14843517	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14843518	14843635	1	+	0	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14843518	14843635	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14843636	14843754	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14843755	14843953	1	+	2	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14843755	14843953	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14843954	14844043	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14844044	14844310	1	+	1	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14844044	14844310	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14844311	14844393	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14844394	14844739	1	+	1	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14844394	14844739	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14844740	14844825	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14844826	14844963	0.93	+	0	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14844826	14844963	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14844964	14845067	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14845068	14845193	0.93	+	0	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14845068	14845193	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14845194	14845306	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14845307	14845519	1	+	0	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14845307	14845519	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14845520	14845638	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14845639	14845915	0.69	+	0	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14845639	14845915	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14845916	14846026	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14846027	14846223	0.74	+	2	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14846027	14846223	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14846224	14846328	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14846329	14846679	1	+	0	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14846329	14846679	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14846680	14846793	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14846794	14847361	0.6	+	0	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14846794	14847361	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14847362	14847453	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14847454	14847579	0.5	+	2	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14847454	14847579	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	intron	14847580	14847655	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	CDS	14847656	14847771	0.65	+	2	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	exon	14847656	14847771	.	+	.	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
Ledus.S2	AUGUSTUS	stop_codon	14847772	14847774	.	+	0	transcript_id "Ledus.S2G200700.t1"; gene_id "Ledus.S2G200700"
# This transcript jg12646.t2 is derived from g6268.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12647.t1 is derived from g6269.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13600650	13602847	.	-	.	Ledus.S4G180300
Ledus.S4	AUGUSTUS	transcript	13600650	13602847	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	stop_codon	13600647	13600649	.	-	0	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	CDS	13600650	13600871	0.71	-	0	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	exon	13600650	13600871	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	intron	13600872	13601004	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	CDS	13601005	13601100	1	-	0	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	exon	13601005	13601100	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	intron	13601101	13601206	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	CDS	13601207	13601323	1	-	0	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	exon	13601207	13601323	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	intron	13601324	13601412	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	CDS	13601413	13601565	0.99	-	0	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	exon	13601413	13601565	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	intron	13601566	13601673	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	CDS	13601674	13601832	0.95	-	0	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	exon	13601674	13601832	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	intron	13601833	13601908	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	CDS	13601909	13602013	1	-	0	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	exon	13601909	13602013	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	intron	13602014	13602118	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	CDS	13602119	13602193	1	-	0	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	exon	13602119	13602193	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	intron	13602194	13602364	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	CDS	13602365	13602847	0.98	-	0	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	exon	13602365	13602847	.	-	.	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
Ledus.S4	AUGUSTUS	start_codon	13602845	13602847	.	-	0	transcript_id "Ledus.S4G180300.t1"; gene_id "Ledus.S4G180300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8809.t1 is derived from g9839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2079489	2081088	.	+	.	Ledus.S3G028600
Ledus.S3	AUGUSTUS	transcript	2079489	2081088	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	start_codon	2079489	2079491	.	+	0	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	CDS	2079489	2079527	0.93	+	0	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	exon	2079489	2079527	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	intron	2079528	2079591	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	CDS	2079592	2079685	0.95	+	0	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	exon	2079592	2079685	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	intron	2079686	2079770	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	CDS	2079771	2079803	0.99	+	2	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	exon	2079771	2079803	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	intron	2079804	2079891	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	CDS	2079892	2080038	1	+	2	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	exon	2079892	2080038	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	intron	2080039	2080120	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	CDS	2080121	2080254	0.99	+	2	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	exon	2080121	2080254	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	intron	2080255	2080340	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	CDS	2080341	2080478	1	+	0	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	exon	2080341	2080478	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	intron	2080479	2080563	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	CDS	2080564	2080662	1	+	0	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	exon	2080564	2080662	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	intron	2080663	2080749	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	CDS	2080750	2081088	0.96	+	0	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	exon	2080750	2081088	.	+	.	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
Ledus.S3	AUGUSTUS	stop_codon	2081089	2081091	.	+	0	transcript_id "Ledus.S3G028600.t1"; gene_id "Ledus.S3G028600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12314.t1 is derived from g5935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11177031	11178144	.	-	.	Ledus.S4G147000
Ledus.S4	AUGUSTUS	transcript	11177031	11178144	.	-	.	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	stop_codon	11177028	11177030	.	-	0	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	CDS	11177031	11177325	1	-	1	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	exon	11177031	11177325	.	-	.	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	intron	11177326	11177416	.	-	.	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	CDS	11177417	11177531	1	-	2	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	exon	11177417	11177531	.	-	.	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	intron	11177532	11177644	.	-	.	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	CDS	11177645	11177730	1	-	1	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	exon	11177645	11177730	.	-	.	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	intron	11177731	11177929	.	-	.	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	CDS	11177930	11178144	1	-	0	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	exon	11177930	11178144	.	-	.	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
Ledus.S4	AUGUSTUS	start_codon	11178142	11178144	.	-	0	transcript_id "Ledus.S4G147000.t1"; gene_id "Ledus.S4G147000"
# This transcript jg7777.t2 is derived from g12448.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7778.t1 is derived from g12449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6489615	6491277	.	+	.	Ledus.S5G055600
Ledus.S5	AUGUSTUS	transcript	6489615	6491277	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	start_codon	6489615	6489617	.	+	0	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	CDS	6489615	6489827	0.99	+	0	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	exon	6489615	6489827	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	intron	6489828	6490016	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	CDS	6490017	6490189	1	+	0	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	exon	6490017	6490189	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	intron	6490190	6490269	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	CDS	6490270	6490322	1	+	1	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	exon	6490270	6490322	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	intron	6490323	6490408	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	CDS	6490409	6490523	1	+	2	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	exon	6490409	6490523	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	intron	6490524	6490608	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	CDS	6490609	6490731	1	+	1	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	exon	6490609	6490731	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	intron	6490732	6490823	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	CDS	6490824	6491165	1	+	1	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	exon	6490824	6491165	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	intron	6491166	6491258	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	CDS	6491259	6491277	1	+	1	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	exon	6491259	6491277	.	+	.	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
Ledus.S5	AUGUSTUS	stop_codon	6491278	6491280	.	+	0	transcript_id "Ledus.S5G055600.t1"; gene_id "Ledus.S5G055600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8754.t1 is derived from g9784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1832319	1834146	.	-	.	Ledus.S3G023100
Ledus.S3	AUGUSTUS	transcript	1832319	1834146	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	stop_codon	1832316	1832318	.	-	0	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	CDS	1832319	1832450	1	-	0	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	exon	1832319	1832450	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	intron	1832451	1832550	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	CDS	1832551	1832649	1	-	0	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	exon	1832551	1832649	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	intron	1832650	1832748	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	CDS	1832749	1832860	1	-	1	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	exon	1832749	1832860	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	intron	1832861	1832941	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	CDS	1832942	1833135	1	-	0	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	exon	1832942	1833135	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	intron	1833136	1833256	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	CDS	1833257	1833338	0.99	-	1	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	exon	1833257	1833338	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	intron	1833339	1833423	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	CDS	1833424	1833564	1	-	1	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	exon	1833424	1833564	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	intron	1833565	1833644	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	CDS	1833645	1833745	1	-	0	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	exon	1833645	1833745	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	intron	1833746	1833891	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	CDS	1833892	1834146	0.69	-	0	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	exon	1833892	1834146	.	-	.	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
Ledus.S3	AUGUSTUS	start_codon	1834144	1834146	.	-	0	transcript_id "Ledus.S3G023100.t1"; gene_id "Ledus.S3G023100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1001.t1 is derived from g7862.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6558543	6560119	.	-	.	Ledus.S2G088300
Ledus.S2	AUGUSTUS	transcript	6558543	6560119	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	stop_codon	6558540	6558542	.	-	0	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	CDS	6558543	6558659	0.89	-	0	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	exon	6558543	6558659	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	intron	6558660	6558728	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	CDS	6558729	6558830	1	-	0	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	exon	6558729	6558830	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	intron	6558831	6558931	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	CDS	6558932	6559003	1	-	0	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	exon	6558932	6559003	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	intron	6559004	6559093	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	CDS	6559094	6559136	1	-	1	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	exon	6559094	6559136	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	intron	6559137	6559221	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	CDS	6559222	6559265	1	-	0	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	exon	6559222	6559265	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	intron	6559266	6559352	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	CDS	6559353	6559412	1	-	0	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	exon	6559353	6559412	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	intron	6559413	6559534	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	CDS	6559535	6559615	0.96	-	0	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	exon	6559535	6559615	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	intron	6559616	6559747	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	CDS	6559748	6560119	0.81	-	0	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	exon	6559748	6560119	.	-	.	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
Ledus.S2	AUGUSTUS	start_codon	6560117	6560119	.	-	0	transcript_id "Ledus.S2G088300.t1"; gene_id "Ledus.S2G088300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10490.t1 is derived from g11520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15584173	15585354	.	+	.	Ledus.S3G196700
Ledus.S3	AUGUSTUS	transcript	15584173	15585354	.	+	.	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	start_codon	15584173	15584175	.	+	0	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	CDS	15584173	15584372	1	+	0	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	exon	15584173	15584372	.	+	.	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	intron	15584373	15584464	.	+	.	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	CDS	15584465	15584562	1	+	1	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	exon	15584465	15584562	.	+	.	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	intron	15584563	15584638	.	+	.	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	CDS	15584639	15585028	0.84	+	2	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	exon	15584639	15585028	.	+	.	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	intron	15585029	15585132	.	+	.	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	CDS	15585133	15585172	0.44	+	2	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	exon	15585133	15585172	.	+	.	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	intron	15585173	15585275	.	+	.	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	CDS	15585276	15585354	0.45	+	1	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	exon	15585276	15585354	.	+	.	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
Ledus.S3	AUGUSTUS	stop_codon	15585355	15585357	.	+	0	transcript_id "Ledus.S3G196700.t1"; gene_id "Ledus.S3G196700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12003.t1 is derived from g5622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8411698	8414795	.	+	.	Ledus.S4G115900
Ledus.S4	AUGUSTUS	transcript	8411698	8414795	.	+	.	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	start_codon	8411698	8411700	.	+	0	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	CDS	8411698	8411842	0.57	+	0	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	exon	8411698	8411842	.	+	.	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	intron	8411843	8411918	.	+	.	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	CDS	8411919	8412920	0.6	+	2	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	exon	8411919	8412920	.	+	.	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	intron	8412921	8413302	.	+	.	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	CDS	8413303	8413339	0.99	+	2	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	exon	8413303	8413339	.	+	.	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	intron	8413340	8413549	.	+	.	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	CDS	8413550	8413603	0.96	+	1	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	exon	8413550	8413603	.	+	.	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	intron	8413604	8413759	.	+	.	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	CDS	8413760	8414795	0.41	+	1	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	exon	8413760	8414795	.	+	.	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
Ledus.S4	AUGUSTUS	stop_codon	8414796	8414798	.	+	0	transcript_id "Ledus.S4G115900.t1"; gene_id "Ledus.S4G115900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11090.t1 is derived from g4708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1712679	1714169	.	+	.	Ledus.S4G024600
Ledus.S4	AUGUSTUS	transcript	1712679	1714169	.	+	.	transcript_id "Ledus.S4G024600.t1"; gene_id "Ledus.S4G024600"
Ledus.S4	AUGUSTUS	start_codon	1712679	1712681	.	+	0	transcript_id "Ledus.S4G024600.t1"; gene_id "Ledus.S4G024600"
Ledus.S4	AUGUSTUS	CDS	1712679	1714169	1	+	0	transcript_id "Ledus.S4G024600.t1"; gene_id "Ledus.S4G024600"
Ledus.S4	AUGUSTUS	exon	1712679	1714169	.	+	.	transcript_id "Ledus.S4G024600.t1"; gene_id "Ledus.S4G024600"
Ledus.S4	AUGUSTUS	stop_codon	1714170	1714172	.	+	0	transcript_id "Ledus.S4G024600.t1"; gene_id "Ledus.S4G024600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12119.t1 is derived from g5738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9637321	9641344	.	+	.	Ledus.S4G127500
Ledus.S4	AUGUSTUS	transcript	9637321	9641344	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	start_codon	9637321	9637323	.	+	0	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	CDS	9637321	9637517	0.24	+	0	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	exon	9637321	9637517	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	intron	9637518	9637640	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	CDS	9637641	9637709	0.8	+	1	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	exon	9637641	9637709	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	intron	9637710	9637794	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	CDS	9637795	9637944	0.61	+	1	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	exon	9637795	9637944	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	intron	9637945	9638210	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	CDS	9638211	9638292	0.41	+	1	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	exon	9638211	9638292	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	intron	9638293	9638384	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	CDS	9638385	9638488	0.56	+	0	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	exon	9638385	9638488	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	intron	9638489	9638691	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	CDS	9638692	9638803	0.58	+	1	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	exon	9638692	9638803	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	intron	9638804	9638900	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	CDS	9638901	9638945	1	+	0	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	exon	9638901	9638945	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	intron	9638946	9639100	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	CDS	9639101	9639285	1	+	0	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	exon	9639101	9639285	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	intron	9639286	9639378	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	CDS	9639379	9639440	1	+	1	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	exon	9639379	9639440	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	intron	9639441	9639617	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	CDS	9639618	9639695	1	+	2	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	exon	9639618	9639695	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	intron	9639696	9639803	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	CDS	9639804	9641344	0.99	+	2	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	exon	9639804	9641344	.	+	.	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
Ledus.S4	AUGUSTUS	stop_codon	9641345	9641347	.	+	0	transcript_id "Ledus.S4G127500.t1"; gene_id "Ledus.S4G127500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3023.t1 is derived from g458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5373059	5377538	.	+	.	Ledus.S1G044400
Ledus.S1	AUGUSTUS	transcript	5373059	5377538	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	start_codon	5373059	5373061	.	+	0	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5373059	5373076	0.6	+	0	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5373059	5373076	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5373077	5373161	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5373162	5373280	1	+	0	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5373162	5373280	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5373281	5373363	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5373364	5373449	1	+	1	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5373364	5373449	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5373450	5373539	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5373540	5373571	1	+	2	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5373540	5373571	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5373572	5373642	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5373643	5373804	1	+	0	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5373643	5373804	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5373805	5373885	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5373886	5373958	1	+	0	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5373886	5373958	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5373959	5374038	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5374039	5374139	1	+	2	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5374039	5374139	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5374140	5374238	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5374239	5374331	1	+	0	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5374239	5374331	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5374332	5374427	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5374428	5374474	0.97	+	0	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5374428	5374474	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5374475	5374837	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5374838	5375049	0.36	+	1	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5374838	5375049	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5375050	5375360	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5375361	5376686	0.96	+	2	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5375361	5376686	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5376687	5376793	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5376794	5376882	0.9	+	2	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5376794	5376882	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5376883	5377087	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5377088	5377174	1	+	0	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5377088	5377174	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	intron	5377175	5377391	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	CDS	5377392	5377538	0.55	+	0	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	exon	5377392	5377538	.	+	.	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
Ledus.S1	AUGUSTUS	stop_codon	5377539	5377541	.	+	0	transcript_id "Ledus.S1G044400.t1"; gene_id "Ledus.S1G044400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8050.t1 is derived from g12721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8832433	8833000	.	-	.	Ledus.S5G082800
Ledus.S5	AUGUSTUS	transcript	8832433	8833000	.	-	.	transcript_id "Ledus.S5G082800.t1"; gene_id "Ledus.S5G082800"
Ledus.S5	AUGUSTUS	stop_codon	8832430	8832432	.	-	0	transcript_id "Ledus.S5G082800.t1"; gene_id "Ledus.S5G082800"
Ledus.S5	AUGUSTUS	CDS	8832433	8832729	0.78	-	0	transcript_id "Ledus.S5G082800.t1"; gene_id "Ledus.S5G082800"
Ledus.S5	AUGUSTUS	exon	8832433	8832729	.	-	.	transcript_id "Ledus.S5G082800.t1"; gene_id "Ledus.S5G082800"
Ledus.S5	AUGUSTUS	intron	8832730	8832946	.	-	.	transcript_id "Ledus.S5G082800.t1"; gene_id "Ledus.S5G082800"
Ledus.S5	AUGUSTUS	CDS	8832947	8833000	0.77	-	0	transcript_id "Ledus.S5G082800.t1"; gene_id "Ledus.S5G082800"
Ledus.S5	AUGUSTUS	exon	8832947	8833000	.	-	.	transcript_id "Ledus.S5G082800.t1"; gene_id "Ledus.S5G082800"
Ledus.S5	AUGUSTUS	start_codon	8832998	8833000	.	-	0	transcript_id "Ledus.S5G082800.t1"; gene_id "Ledus.S5G082800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6541.t1 is derived from g3984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32222057	32224615	.	-	.	Ledus.S1G396200
Ledus.S1	AUGUSTUS	transcript	32222057	32224615	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	stop_codon	32222054	32222056	.	-	0	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	CDS	32222057	32222224	0.81	-	0	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	exon	32222057	32222224	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	intron	32222225	32222310	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	CDS	32222311	32222399	1	-	2	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	exon	32222311	32222399	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	intron	32222400	32222493	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	CDS	32222494	32222556	0.99	-	2	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	exon	32222494	32222556	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	intron	32222557	32222658	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	CDS	32222659	32222761	1	-	0	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	exon	32222659	32222761	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	intron	32222762	32223282	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	CDS	32223283	32223357	1	-	0	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	exon	32223283	32223357	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	intron	32223358	32223460	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	CDS	32223461	32223523	0.99	-	0	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	exon	32223461	32223523	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	intron	32223524	32223629	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	CDS	32223630	32223725	1	-	0	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	exon	32223630	32223725	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	intron	32223726	32223810	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	CDS	32223811	32223962	1	-	2	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	exon	32223811	32223962	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	intron	32223963	32224055	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	CDS	32224056	32224158	1	-	0	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	exon	32224056	32224158	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	intron	32224159	32224249	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	CDS	32224250	32224615	0.64	-	0	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	exon	32224250	32224615	.	-	.	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
Ledus.S1	AUGUSTUS	start_codon	32224613	32224615	.	-	0	transcript_id "Ledus.S1G396200.t1"; gene_id "Ledus.S1G396200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10255.t1 is derived from g11285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13839736	13844398	.	+	.	Ledus.S3G173200
Ledus.S3	AUGUSTUS	transcript	13839736	13844398	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	start_codon	13839736	13839738	.	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	CDS	13839736	13840302	0.78	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	exon	13839736	13840302	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	intron	13840303	13840688	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	CDS	13840689	13840874	1	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	exon	13840689	13840874	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	intron	13840875	13841162	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	CDS	13841163	13841378	0.6	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	exon	13841163	13841378	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	intron	13841379	13841493	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	CDS	13841494	13841604	0.58	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	exon	13841494	13841604	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	intron	13841605	13841683	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	CDS	13841684	13841881	0.94	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	exon	13841684	13841881	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	intron	13841882	13842020	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	CDS	13842021	13842155	1	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	exon	13842021	13842155	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	intron	13842156	13842347	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	CDS	13842348	13842404	1	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	exon	13842348	13842404	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	intron	13842405	13842515	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	CDS	13842516	13842632	1	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	exon	13842516	13842632	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	intron	13842633	13842745	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	CDS	13842746	13842823	1	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	exon	13842746	13842823	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	intron	13842824	13842963	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	CDS	13842964	13843107	1	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	exon	13842964	13843107	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	intron	13843108	13843231	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	CDS	13843232	13844398	1	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	exon	13843232	13844398	.	+	.	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
Ledus.S3	AUGUSTUS	stop_codon	13844399	13844401	.	+	0	transcript_id "Ledus.S3G173200.t1"; gene_id "Ledus.S3G173200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11206.t1 is derived from g4824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2706415	2709649	.	+	.	Ledus.S4G036200
Ledus.S4	AUGUSTUS	transcript	2706415	2709649	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	start_codon	2706415	2706417	.	+	0	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	CDS	2706415	2706754	0.85	+	0	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	exon	2706415	2706754	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	intron	2706755	2706878	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	CDS	2706879	2707541	1	+	2	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	exon	2706879	2707541	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	intron	2707542	2707677	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	CDS	2707678	2707832	0.97	+	2	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	exon	2707678	2707832	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	intron	2707833	2707937	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	CDS	2707938	2708186	1	+	0	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	exon	2707938	2708186	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	intron	2708187	2708299	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	CDS	2708300	2708434	1	+	0	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	exon	2708300	2708434	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	intron	2708435	2708604	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	CDS	2708605	2708787	1	+	0	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	exon	2708605	2708787	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	intron	2708788	2708879	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	CDS	2708880	2709041	1	+	0	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	exon	2708880	2709041	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	intron	2709042	2709127	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	CDS	2709128	2709649	1	+	0	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	exon	2709128	2709649	.	+	.	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
Ledus.S4	AUGUSTUS	stop_codon	2709650	2709652	.	+	0	transcript_id "Ledus.S4G036200.t1"; gene_id "Ledus.S4G036200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8461.t1 is derived from g13133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11810176	11812248	.	-	.	Ledus.S5G123900
Ledus.S5	AUGUSTUS	transcript	11810176	11812248	.	-	.	transcript_id "Ledus.S5G123900.t1"; gene_id "Ledus.S5G123900"
Ledus.S5	AUGUSTUS	stop_codon	11810173	11810175	.	-	0	transcript_id "Ledus.S5G123900.t1"; gene_id "Ledus.S5G123900"
Ledus.S5	AUGUSTUS	CDS	11810176	11812248	1	-	0	transcript_id "Ledus.S5G123900.t1"; gene_id "Ledus.S5G123900"
Ledus.S5	AUGUSTUS	exon	11810176	11812248	.	-	.	transcript_id "Ledus.S5G123900.t1"; gene_id "Ledus.S5G123900"
Ledus.S5	AUGUSTUS	start_codon	11812246	11812248	.	-	0	transcript_id "Ledus.S5G123900.t1"; gene_id "Ledus.S5G123900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg230.t1 is derived from g7091.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1010644	1014244	.	-	.	Ledus.S2G011200
Ledus.S2	AUGUSTUS	transcript	1010644	1014244	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	stop_codon	1010641	1010643	.	-	0	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	CDS	1010644	1011765	1	-	0	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	exon	1010644	1011765	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	intron	1011766	1011835	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	CDS	1011836	1012381	0.99	-	0	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	exon	1011836	1012381	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	intron	1012382	1012469	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	CDS	1012470	1012647	1	-	1	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	exon	1012470	1012647	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	intron	1012648	1012730	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	CDS	1012731	1013047	1	-	0	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	exon	1012731	1013047	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	intron	1013048	1013132	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	CDS	1013133	1013295	1	-	1	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	exon	1013133	1013295	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	intron	1013296	1013360	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	CDS	1013361	1013683	0.7	-	0	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	exon	1013361	1013683	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	intron	1013684	1013767	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	CDS	1013768	1014244	1	-	0	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	exon	1013768	1014244	.	-	.	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
Ledus.S2	AUGUSTUS	start_codon	1014242	1014244	.	-	0	transcript_id "Ledus.S2G011200.t1"; gene_id "Ledus.S2G011200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10298.t1 is derived from g11328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14123596	14125053	.	-	.	Ledus.S3G177500
Ledus.S3	AUGUSTUS	transcript	14123596	14125053	.	-	.	transcript_id "Ledus.S3G177500.t1"; gene_id "Ledus.S3G177500"
Ledus.S3	AUGUSTUS	stop_codon	14123593	14123595	.	-	0	transcript_id "Ledus.S3G177500.t1"; gene_id "Ledus.S3G177500"
Ledus.S3	AUGUSTUS	CDS	14123596	14125053	0.92	-	0	transcript_id "Ledus.S3G177500.t1"; gene_id "Ledus.S3G177500"
Ledus.S3	AUGUSTUS	exon	14123596	14125053	.	-	.	transcript_id "Ledus.S3G177500.t1"; gene_id "Ledus.S3G177500"
Ledus.S3	AUGUSTUS	start_codon	14125051	14125053	.	-	0	transcript_id "Ledus.S3G177500.t1"; gene_id "Ledus.S3G177500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7677.t1 is derived from g12348.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5133908	5135262	.	+	.	Ledus.S5G045500
Ledus.S5	AUGUSTUS	transcript	5133908	5135262	.	+	.	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	start_codon	5133908	5133910	.	+	0	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	CDS	5133908	5133940	0.66	+	0	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	exon	5133908	5133940	.	+	.	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	intron	5133941	5134024	.	+	.	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	CDS	5134025	5134246	0.94	+	0	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	exon	5134025	5134246	.	+	.	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	intron	5134247	5134343	.	+	.	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	CDS	5134344	5134507	0.83	+	0	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	exon	5134344	5134507	.	+	.	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	intron	5134508	5134596	.	+	.	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	CDS	5134597	5134642	0.82	+	1	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	exon	5134597	5134642	.	+	.	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	intron	5134643	5134743	.	+	.	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	CDS	5134744	5135262	0.89	+	0	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	exon	5134744	5135262	.	+	.	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	stop_codon	5135263	5135265	.	+	0	transcript_id "Ledus.S5G045500.t1"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	transcript	5133908	5135262	.	+	.	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	start_codon	5133908	5133910	.	+	0	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	CDS	5133908	5133940	0.66	+	0	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	exon	5133908	5133940	.	+	.	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	intron	5133941	5134024	.	+	.	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	CDS	5134025	5134250	1	+	0	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	exon	5134025	5134250	.	+	.	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	intron	5134251	5134343	.	+	.	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	CDS	5134344	5134642	0.55	+	2	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	exon	5134344	5134642	.	+	.	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	intron	5134643	5134743	.	+	.	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	CDS	5134744	5135262	0.87	+	0	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	exon	5134744	5135262	.	+	.	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
Ledus.S5	AUGUSTUS	stop_codon	5135263	5135265	.	+	0	transcript_id "Ledus.S5G045500.t2"; gene_id "Ledus.S5G045500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2134.t1 is derived from g8997.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15022848	15023297	.	-	.	Ledus.S2G201600
Ledus.S2	AUGUSTUS	transcript	15022848	15023297	.	-	.	transcript_id "Ledus.S2G201600.t1"; gene_id "Ledus.S2G201600"
Ledus.S2	AUGUSTUS	stop_codon	15022845	15022847	.	-	0	transcript_id "Ledus.S2G201600.t1"; gene_id "Ledus.S2G201600"
Ledus.S2	AUGUSTUS	CDS	15022848	15023297	0.44	-	0	transcript_id "Ledus.S2G201600.t1"; gene_id "Ledus.S2G201600"
Ledus.S2	AUGUSTUS	exon	15022848	15023297	.	-	.	transcript_id "Ledus.S2G201600.t1"; gene_id "Ledus.S2G201600"
Ledus.S2	AUGUSTUS	start_codon	15023295	15023297	.	-	0	transcript_id "Ledus.S2G201600.t1"; gene_id "Ledus.S2G201600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2.t1 is derived from g11865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C14	AUGUSTUS	gene	31772	32523	.	+	.	Ledus.C14G000100
Ledus.C14	AUGUSTUS	transcript	31772	32523	.	+	.	transcript_id "Ledus.C14G000100.t1"; gene_id "Ledus.C14G000100"
Ledus.C14	AUGUSTUS	start_codon	31772	31774	.	+	0	transcript_id "Ledus.C14G000100.t1"; gene_id "Ledus.C14G000100"
Ledus.C14	AUGUSTUS	CDS	31772	32019	0.56	+	0	transcript_id "Ledus.C14G000100.t1"; gene_id "Ledus.C14G000100"
Ledus.C14	AUGUSTUS	exon	31772	32019	.	+	.	transcript_id "Ledus.C14G000100.t1"; gene_id "Ledus.C14G000100"
Ledus.C14	AUGUSTUS	intron	32020	32393	.	+	.	transcript_id "Ledus.C14G000100.t1"; gene_id "Ledus.C14G000100"
Ledus.C14	AUGUSTUS	CDS	32394	32523	0.5	+	1	transcript_id "Ledus.C14G000100.t1"; gene_id "Ledus.C14G000100"
Ledus.C14	AUGUSTUS	exon	32394	32523	.	+	.	transcript_id "Ledus.C14G000100.t1"; gene_id "Ledus.C14G000100"
Ledus.C14	AUGUSTUS	stop_codon	32524	32526	.	+	0	transcript_id "Ledus.C14G000100.t1"; gene_id "Ledus.C14G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2222.t1 is derived from g9085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16153242	16153697	.	+	.	Ledus.S2G210400
Ledus.S2	AUGUSTUS	transcript	16153242	16153697	.	+	.	transcript_id "Ledus.S2G210400.t1"; gene_id "Ledus.S2G210400"
Ledus.S2	AUGUSTUS	start_codon	16153242	16153244	.	+	0	transcript_id "Ledus.S2G210400.t1"; gene_id "Ledus.S2G210400"
Ledus.S2	AUGUSTUS	CDS	16153242	16153403	0.44	+	0	transcript_id "Ledus.S2G210400.t1"; gene_id "Ledus.S2G210400"
Ledus.S2	AUGUSTUS	exon	16153242	16153403	.	+	.	transcript_id "Ledus.S2G210400.t1"; gene_id "Ledus.S2G210400"
Ledus.S2	AUGUSTUS	intron	16153404	16153592	.	+	.	transcript_id "Ledus.S2G210400.t1"; gene_id "Ledus.S2G210400"
Ledus.S2	AUGUSTUS	CDS	16153593	16153697	0.42	+	0	transcript_id "Ledus.S2G210400.t1"; gene_id "Ledus.S2G210400"
Ledus.S2	AUGUSTUS	exon	16153593	16153697	.	+	.	transcript_id "Ledus.S2G210400.t1"; gene_id "Ledus.S2G210400"
Ledus.S2	AUGUSTUS	stop_codon	16153698	16153700	.	+	0	transcript_id "Ledus.S2G210400.t1"; gene_id "Ledus.S2G210400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3142.t1 is derived from g577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6239457	6240237	.	-	.	Ledus.S1G056300
Ledus.S1	AUGUSTUS	transcript	6239457	6240237	.	-	.	transcript_id "Ledus.S1G056300.t1"; gene_id "Ledus.S1G056300"
Ledus.S1	AUGUSTUS	stop_codon	6239454	6239456	.	-	0	transcript_id "Ledus.S1G056300.t1"; gene_id "Ledus.S1G056300"
Ledus.S1	AUGUSTUS	CDS	6239457	6239978	0.86	-	0	transcript_id "Ledus.S1G056300.t1"; gene_id "Ledus.S1G056300"
Ledus.S1	AUGUSTUS	exon	6239457	6239978	.	-	.	transcript_id "Ledus.S1G056300.t1"; gene_id "Ledus.S1G056300"
Ledus.S1	AUGUSTUS	intron	6239979	6240110	.	-	.	transcript_id "Ledus.S1G056300.t1"; gene_id "Ledus.S1G056300"
Ledus.S1	AUGUSTUS	CDS	6240111	6240133	0.86	-	2	transcript_id "Ledus.S1G056300.t1"; gene_id "Ledus.S1G056300"
Ledus.S1	AUGUSTUS	exon	6240111	6240133	.	-	.	transcript_id "Ledus.S1G056300.t1"; gene_id "Ledus.S1G056300"
Ledus.S1	AUGUSTUS	intron	6240134	6240218	.	-	.	transcript_id "Ledus.S1G056300.t1"; gene_id "Ledus.S1G056300"
Ledus.S1	AUGUSTUS	CDS	6240219	6240237	0.86	-	0	transcript_id "Ledus.S1G056300.t1"; gene_id "Ledus.S1G056300"
Ledus.S1	AUGUSTUS	exon	6240219	6240237	.	-	.	transcript_id "Ledus.S1G056300.t1"; gene_id "Ledus.S1G056300"
Ledus.S1	AUGUSTUS	start_codon	6240235	6240237	.	-	0	transcript_id "Ledus.S1G056300.t1"; gene_id "Ledus.S1G056300"
# This transcript jg2639.t2 is derived from g72.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2640.t1 is derived from g73.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1067169	1068225	.	+	.	Ledus.S1G006100
Ledus.S1	AUGUSTUS	transcript	1067169	1068225	.	+	.	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	start_codon	1067169	1067171	.	+	0	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	CDS	1067169	1067288	0.76	+	0	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	exon	1067169	1067288	.	+	.	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	intron	1067289	1067454	.	+	.	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	CDS	1067455	1067537	1	+	0	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	exon	1067455	1067537	.	+	.	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	intron	1067538	1067732	.	+	.	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	CDS	1067733	1067748	0.95	+	1	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	exon	1067733	1067748	.	+	.	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	intron	1067749	1067853	.	+	.	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	CDS	1067854	1067919	0.62	+	0	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	exon	1067854	1067919	.	+	.	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	intron	1067920	1068012	.	+	.	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	CDS	1068013	1068053	0.9	+	0	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	exon	1068013	1068053	.	+	.	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	intron	1068054	1068140	.	+	.	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	CDS	1068141	1068225	0.76	+	1	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	exon	1068141	1068225	.	+	.	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
Ledus.S1	AUGUSTUS	stop_codon	1068226	1068228	.	+	0	transcript_id "Ledus.S1G006100.t1"; gene_id "Ledus.S1G006100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9973.t1 is derived from g11003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11645048	11646408	.	-	.	Ledus.S3G145000
Ledus.S3	AUGUSTUS	transcript	11645048	11646408	.	-	.	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	stop_codon	11645045	11645047	.	-	0	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	CDS	11645048	11645432	0.34	-	1	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	exon	11645048	11645432	.	-	.	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	intron	11645433	11645503	.	-	.	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	CDS	11645504	11645623	0.4	-	1	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	exon	11645504	11645623	.	-	.	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	intron	11645624	11645728	.	-	.	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	CDS	11645729	11645871	0.74	-	0	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	exon	11645729	11645871	.	-	.	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	intron	11645872	11646138	.	-	.	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	CDS	11646139	11646408	0.73	-	0	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	exon	11646139	11646408	.	-	.	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
Ledus.S3	AUGUSTUS	start_codon	11646406	11646408	.	-	0	transcript_id "Ledus.S3G145000.t1"; gene_id "Ledus.S3G145000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10485.t1 is derived from g11515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15546297	15557771	.	-	.	Ledus.S3G196200
Ledus.S3	AUGUSTUS	transcript	15546297	15557771	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	stop_codon	15546294	15546296	.	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15546297	15546524	0.82	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15546297	15546524	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15546525	15546657	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15546658	15546726	1	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15546658	15546726	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15546727	15546896	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15546897	15547020	1	-	1	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15546897	15547020	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15547021	15547141	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15547142	15547266	1	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15547142	15547266	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15547267	15547420	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15547421	15547897	1	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15547421	15547897	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15547898	15548080	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15548081	15548424	1	-	2	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15548081	15548424	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15548425	15548540	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15548541	15548886	0.97	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15548541	15548886	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15548887	15549010	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15549011	15549499	1	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15549011	15549499	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15549500	15549587	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15549588	15549882	0.99	-	1	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15549588	15549882	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15549883	15550002	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15550003	15550186	0.87	-	2	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15550003	15550186	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15550187	15550267	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15550268	15550347	0.88	-	1	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15550268	15550347	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15550348	15550511	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15550512	15550735	1	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15550512	15550735	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15550736	15550957	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15550958	15551449	0.96	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15550958	15551449	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15551450	15551545	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15551546	15551938	0.96	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15551546	15551938	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15551939	15552083	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15552084	15552224	1	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15552084	15552224	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15552225	15552322	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15552323	15552685	1	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15552323	15552685	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15552686	15552854	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15552855	15555083	0.98	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15552855	15555083	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15555084	15555265	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15555266	15555328	1	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15555266	15555328	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15555329	15555469	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15555470	15555571	1	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15555470	15555571	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15555572	15555767	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15555768	15555976	1	-	2	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15555768	15555976	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15555977	15556162	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15556163	15556250	0.99	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15556163	15556250	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15556251	15556388	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15556389	15556622	0.98	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15556389	15556622	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15556623	15556744	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15556745	15556883	0.99	-	1	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15556745	15556883	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15556884	15557089	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15557090	15557574	0.99	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15557090	15557574	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	intron	15557575	15557714	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	CDS	15557715	15557771	0.57	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	exon	15557715	15557771	.	-	.	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
Ledus.S3	AUGUSTUS	start_codon	15557769	15557771	.	-	0	transcript_id "Ledus.S3G196200.t1"; gene_id "Ledus.S3G196200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9233.t1 is derived from g10263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5528048	5530914	.	-	.	Ledus.S3G071000
Ledus.S3	AUGUSTUS	transcript	5528048	5530914	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	stop_codon	5528045	5528047	.	-	0	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5528048	5528090	0.81	-	1	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5528048	5528090	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	intron	5528091	5528268	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5528269	5528328	0.81	-	1	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5528269	5528328	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	intron	5528329	5528468	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5528469	5528491	0.81	-	0	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5528469	5528491	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	intron	5528492	5528623	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5528624	5528752	0.14	-	0	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5528624	5528752	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	intron	5528753	5529096	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5529097	5529165	1	-	0	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5529097	5529165	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	intron	5529166	5529266	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5529267	5529362	1	-	0	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5529267	5529362	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	intron	5529363	5529441	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5529442	5529615	0.98	-	0	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5529442	5529615	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	intron	5529616	5529725	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5529726	5529788	0.95	-	0	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5529726	5529788	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	intron	5529789	5529910	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5529911	5529991	0.9	-	0	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5529911	5529991	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	intron	5529992	5530064	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5530065	5530160	1	-	0	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5530065	5530160	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	intron	5530161	5530247	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5530248	5530324	1	-	2	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5530248	5530324	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	intron	5530325	5530408	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5530409	5530492	1	-	2	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5530409	5530492	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	intron	5530493	5530700	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	CDS	5530701	5530914	0.55	-	0	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	exon	5530701	5530914	.	-	.	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
Ledus.S3	AUGUSTUS	start_codon	5530912	5530914	.	-	0	transcript_id "Ledus.S3G071000.t1"; gene_id "Ledus.S3G071000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5635.t1 is derived from g3074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25460638	25464360	.	+	.	Ledus.S1G305600
Ledus.S1	AUGUSTUS	transcript	25460638	25464360	.	+	.	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	start_codon	25460638	25460640	.	+	0	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	CDS	25460638	25460640	0.96	+	0	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	exon	25460638	25460640	.	+	.	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	intron	25460641	25460722	.	+	.	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	CDS	25460723	25460837	0.97	+	0	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	exon	25460723	25460837	.	+	.	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	intron	25460838	25460917	.	+	.	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	CDS	25460918	25461021	0.96	+	2	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	exon	25460918	25461021	.	+	.	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	intron	25461022	25461103	.	+	.	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	CDS	25461104	25461288	0.94	+	0	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	exon	25461104	25461288	.	+	.	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	intron	25461289	25461389	.	+	.	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	CDS	25461390	25464360	1	+	1	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	exon	25461390	25464360	.	+	.	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
Ledus.S1	AUGUSTUS	stop_codon	25464361	25464363	.	+	0	transcript_id "Ledus.S1G305600.t1"; gene_id "Ledus.S1G305600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7348.t1 is derived from g12019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1331889	1332149	.	+	.	Ledus.S5G012600
Ledus.S5	AUGUSTUS	transcript	1331889	1332149	.	+	.	transcript_id "Ledus.S5G012600.t1"; gene_id "Ledus.S5G012600"
Ledus.S5	AUGUSTUS	start_codon	1331889	1331891	.	+	0	transcript_id "Ledus.S5G012600.t1"; gene_id "Ledus.S5G012600"
Ledus.S5	AUGUSTUS	CDS	1331889	1332149	0.7	+	0	transcript_id "Ledus.S5G012600.t1"; gene_id "Ledus.S5G012600"
Ledus.S5	AUGUSTUS	exon	1331889	1332149	.	+	.	transcript_id "Ledus.S5G012600.t1"; gene_id "Ledus.S5G012600"
Ledus.S5	AUGUSTUS	stop_codon	1332150	1332152	.	+	0	transcript_id "Ledus.S5G012600.t1"; gene_id "Ledus.S5G012600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg3414.t1 is derived from g849.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8150764	8157606	.	+	.	Ledus.S1G083500
Ledus.S1	AUGUSTUS	transcript	8150764	8157606	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	start_codon	8150764	8150766	.	+	0	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8150764	8151572	0.92	+	0	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8150764	8151572	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8151573	8151963	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8151964	8152880	1	+	1	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8151964	8152880	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8152881	8153027	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153028	8153173	0.93	+	2	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153028	8153173	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8153174	8153286	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153287	8153334	0.99	+	0	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153287	8153334	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8153335	8153435	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153436	8153483	1	+	0	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153436	8153483	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8153484	8153713	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153714	8153821	1	+	0	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153714	8153821	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8153822	8153958	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153959	8154159	1	+	0	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153959	8154159	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8154160	8154268	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8154269	8154354	1	+	0	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8154269	8154354	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8154355	8154449	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8154450	8156047	0.99	+	1	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8154450	8156047	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8156048	8156240	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8156241	8156534	0.99	+	2	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8156241	8156534	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8156535	8156681	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8156682	8156849	0.99	+	2	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8156682	8156849	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8156850	8157019	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8157020	8157606	1	+	2	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8157020	8157606	.	+	.	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	stop_codon	8157607	8157609	.	+	0	transcript_id "Ledus.S1G083500.t1"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	transcript	8150764	8157606	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	start_codon	8150764	8150766	.	+	0	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8150764	8151572	0.91	+	0	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8150764	8151572	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8151573	8151963	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8151964	8152880	1	+	1	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8151964	8152880	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8152881	8153027	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153028	8153173	0.92	+	2	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153028	8153173	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8153174	8153286	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153287	8153334	1	+	0	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153287	8153334	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8153335	8153435	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153436	8153483	1	+	0	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153436	8153483	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8153484	8153713	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153714	8153821	1	+	0	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153714	8153821	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8153822	8153958	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153959	8154159	1	+	0	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153959	8154159	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8154160	8154268	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8154269	8154354	1	+	0	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8154269	8154354	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8154355	8154449	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8154450	8156047	0.98	+	1	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8154450	8156047	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8156048	8156240	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8156241	8156444	0.85	+	2	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8156241	8156444	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8156445	8156681	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8156682	8156849	0.91	+	2	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8156682	8156849	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8156850	8157019	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8157020	8157606	1	+	2	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8157020	8157606	.	+	.	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	stop_codon	8157607	8157609	.	+	0	transcript_id "Ledus.S1G083500.t2"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	transcript	8150764	8157606	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	start_codon	8150764	8150766	.	+	0	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8150764	8151572	0.91	+	0	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8150764	8151572	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8151573	8151963	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8151964	8152880	1	+	1	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8151964	8152880	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8152881	8153027	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153028	8153173	0.93	+	2	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153028	8153173	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8153174	8153286	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153287	8153334	0.99	+	0	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153287	8153334	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8153335	8153435	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153436	8153483	1	+	0	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153436	8153483	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8153484	8153713	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153714	8153821	1	+	0	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153714	8153821	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8153822	8153970	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8153971	8154159	1	+	0	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8153971	8154159	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8154160	8154268	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8154269	8154354	1	+	0	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8154269	8154354	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8154355	8154449	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8154450	8156047	1	+	1	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8154450	8156047	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8156048	8156240	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8156241	8156534	0.68	+	2	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8156241	8156534	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8156535	8156681	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8156682	8156849	1	+	2	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8156682	8156849	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	intron	8156850	8157019	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	CDS	8157020	8157606	1	+	2	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	exon	8157020	8157606	.	+	.	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
Ledus.S1	AUGUSTUS	stop_codon	8157607	8157609	.	+	0	transcript_id "Ledus.S1G083500.t3"; gene_id "Ledus.S1G083500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6260.t1 is derived from g3703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29951657	29953843	.	+	.	Ledus.S1G368100
Ledus.S1	AUGUSTUS	transcript	29951657	29953843	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	start_codon	29951657	29951659	.	+	0	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	CDS	29951657	29951968	1	+	0	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	exon	29951657	29951968	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	intron	29951969	29952049	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	CDS	29952050	29952294	1	+	0	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	exon	29952050	29952294	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	intron	29952295	29952385	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	CDS	29952386	29952494	1	+	1	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	exon	29952386	29952494	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	intron	29952495	29952580	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	CDS	29952581	29952719	1	+	0	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	exon	29952581	29952719	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	intron	29952720	29952801	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	CDS	29952802	29952859	1	+	2	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	exon	29952802	29952859	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	intron	29952860	29953016	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	CDS	29953017	29953034	1	+	1	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	exon	29953017	29953034	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	intron	29953035	29953128	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	CDS	29953129	29953251	1	+	1	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	exon	29953129	29953251	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	intron	29953252	29953362	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	CDS	29953363	29953519	1	+	1	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	exon	29953363	29953519	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	intron	29953520	29953611	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	CDS	29953612	29953645	1	+	0	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	exon	29953612	29953645	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	intron	29953646	29953742	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	CDS	29953743	29953843	0.79	+	2	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	exon	29953743	29953843	.	+	.	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
Ledus.S1	AUGUSTUS	stop_codon	29953844	29953846	.	+	0	transcript_id "Ledus.S1G368100.t1"; gene_id "Ledus.S1G368100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg576.t1 is derived from g7437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3426867	3429132	.	-	.	Ledus.S2G045800
Ledus.S2	AUGUSTUS	transcript	3426867	3429132	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	stop_codon	3426864	3426866	.	-	0	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	CDS	3426867	3427016	1	-	0	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	exon	3426867	3427016	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	intron	3427017	3427114	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	CDS	3427115	3427264	1	-	0	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	exon	3427115	3427264	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	intron	3427265	3427357	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	CDS	3427358	3427695	1	-	2	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	exon	3427358	3427695	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	intron	3427696	3427841	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	CDS	3427842	3427944	1	-	0	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	exon	3427842	3427944	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	intron	3427945	3428043	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	CDS	3428044	3428313	0.99	-	0	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	exon	3428044	3428313	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	intron	3428314	3428458	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	CDS	3428459	3428644	1	-	0	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	exon	3428459	3428644	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	intron	3428645	3428742	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	CDS	3428743	3428859	1	-	0	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	exon	3428743	3428859	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	intron	3428860	3429024	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	CDS	3429025	3429132	0.99	-	0	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	exon	3429025	3429132	.	-	.	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
Ledus.S2	AUGUSTUS	start_codon	3429130	3429132	.	-	0	transcript_id "Ledus.S2G045800.t1"; gene_id "Ledus.S2G045800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10655.t1 is derived from g11685.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16879845	16882305	.	-	.	Ledus.S3G213200
Ledus.S3	AUGUSTUS	transcript	16879898	16882305	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	stop_codon	16879895	16879897	.	-	0	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16879898	16879913	1	-	1	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16879898	16879913	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16879914	16880002	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16880003	16880064	1	-	0	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16880003	16880064	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16880065	16880265	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16880266	16880374	1	-	1	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16880266	16880374	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16880375	16880522	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16880523	16880599	1	-	0	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16880523	16880599	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16880600	16880690	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16880691	16880747	1	-	0	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16880691	16880747	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16880748	16880831	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16880832	16880876	1	-	0	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16880832	16880876	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16880877	16881026	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16881027	16881140	1	-	0	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16881027	16881140	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16881141	16881266	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16881267	16881535	1	-	2	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16881267	16881535	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16881536	16881666	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16881667	16881763	0.97	-	0	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16881667	16881763	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16881764	16882066	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16882067	16882137	1	-	2	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16882067	16882137	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16882138	16882220	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16882221	16882305	0.78	-	0	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16882221	16882305	.	-	.	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	start_codon	16882303	16882305	.	-	0	transcript_id "Ledus.S3G213200.t1"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	transcript	16879845	16882305	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	stop_codon	16879842	16879844	.	-	0	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16879845	16879908	0.98	-	1	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16879845	16879908	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16879909	16880002	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16880003	16880064	0.97	-	0	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16880003	16880064	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16880065	16880265	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16880266	16880374	0.97	-	1	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16880266	16880374	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16880375	16880522	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16880523	16880599	1	-	0	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16880523	16880599	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16880600	16880690	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16880691	16880747	1	-	0	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16880691	16880747	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16880748	16880831	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16880832	16880876	1	-	0	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16880832	16880876	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16880877	16881026	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16881027	16881140	1	-	0	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16881027	16881140	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16881141	16881266	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16881267	16881535	1	-	2	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16881267	16881535	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16881536	16881666	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16881667	16881763	0.97	-	0	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16881667	16881763	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16881764	16882066	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16882067	16882137	1	-	2	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16882067	16882137	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	intron	16882138	16882220	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	CDS	16882221	16882305	0.78	-	0	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	exon	16882221	16882305	.	-	.	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
Ledus.S3	AUGUSTUS	start_codon	16882303	16882305	.	-	0	transcript_id "Ledus.S3G213200.t2"; gene_id "Ledus.S3G213200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6423.t1 is derived from g3866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31183004	31183501	.	+	.	Ledus.S1G384400
Ledus.S1	AUGUSTUS	transcript	31183004	31183501	.	+	.	transcript_id "Ledus.S1G384400.t1"; gene_id "Ledus.S1G384400"
Ledus.S1	AUGUSTUS	start_codon	31183004	31183006	.	+	0	transcript_id "Ledus.S1G384400.t1"; gene_id "Ledus.S1G384400"
Ledus.S1	AUGUSTUS	CDS	31183004	31183501	0.73	+	0	transcript_id "Ledus.S1G384400.t1"; gene_id "Ledus.S1G384400"
Ledus.S1	AUGUSTUS	exon	31183004	31183501	.	+	.	transcript_id "Ledus.S1G384400.t1"; gene_id "Ledus.S1G384400"
Ledus.S1	AUGUSTUS	stop_codon	31183502	31183504	.	+	0	transcript_id "Ledus.S1G384400.t1"; gene_id "Ledus.S1G384400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8126.t1 is derived from g12797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9240395	9240697	.	+	.	Ledus.S5G090400
Ledus.S5	AUGUSTUS	transcript	9240395	9240697	.	+	.	transcript_id "Ledus.S5G090400.t1"; gene_id "Ledus.S5G090400"
Ledus.S5	AUGUSTUS	start_codon	9240395	9240397	.	+	0	transcript_id "Ledus.S5G090400.t1"; gene_id "Ledus.S5G090400"
Ledus.S5	AUGUSTUS	CDS	9240395	9240697	1	+	0	transcript_id "Ledus.S5G090400.t1"; gene_id "Ledus.S5G090400"
Ledus.S5	AUGUSTUS	exon	9240395	9240697	.	+	.	transcript_id "Ledus.S5G090400.t1"; gene_id "Ledus.S5G090400"
Ledus.S5	AUGUSTUS	stop_codon	9240698	9240700	.	+	0	transcript_id "Ledus.S5G090400.t1"; gene_id "Ledus.S5G090400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1860.t1 is derived from g8723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12993975	12994229	.	+	.	Ledus.S2G174200
Ledus.S2	AUGUSTUS	transcript	12993975	12994229	.	+	.	transcript_id "Ledus.S2G174200.t1"; gene_id "Ledus.S2G174200"
Ledus.S2	AUGUSTUS	start_codon	12993975	12993977	.	+	0	transcript_id "Ledus.S2G174200.t1"; gene_id "Ledus.S2G174200"
Ledus.S2	AUGUSTUS	CDS	12993975	12994229	0.99	+	0	transcript_id "Ledus.S2G174200.t1"; gene_id "Ledus.S2G174200"
Ledus.S2	AUGUSTUS	exon	12993975	12994229	.	+	.	transcript_id "Ledus.S2G174200.t1"; gene_id "Ledus.S2G174200"
Ledus.S2	AUGUSTUS	stop_codon	12994230	12994232	.	+	0	transcript_id "Ledus.S2G174200.t1"; gene_id "Ledus.S2G174200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4981.t1 is derived from g2419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20968596	20969166	.	+	.	Ledus.S1G240200
Ledus.S1	AUGUSTUS	transcript	20968596	20969166	.	+	.	transcript_id "Ledus.S1G240200.t1"; gene_id "Ledus.S1G240200"
Ledus.S1	AUGUSTUS	start_codon	20968596	20968598	.	+	0	transcript_id "Ledus.S1G240200.t1"; gene_id "Ledus.S1G240200"
Ledus.S1	AUGUSTUS	CDS	20968596	20968761	0.93	+	0	transcript_id "Ledus.S1G240200.t1"; gene_id "Ledus.S1G240200"
Ledus.S1	AUGUSTUS	exon	20968596	20968761	.	+	.	transcript_id "Ledus.S1G240200.t1"; gene_id "Ledus.S1G240200"
Ledus.S1	AUGUSTUS	intron	20968762	20968870	.	+	.	transcript_id "Ledus.S1G240200.t1"; gene_id "Ledus.S1G240200"
Ledus.S1	AUGUSTUS	CDS	20968871	20969166	0.99	+	2	transcript_id "Ledus.S1G240200.t1"; gene_id "Ledus.S1G240200"
Ledus.S1	AUGUSTUS	exon	20968871	20969166	.	+	.	transcript_id "Ledus.S1G240200.t1"; gene_id "Ledus.S1G240200"
Ledus.S1	AUGUSTUS	stop_codon	20969167	20969169	.	+	0	transcript_id "Ledus.S1G240200.t1"; gene_id "Ledus.S1G240200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10477.t1 is derived from g11507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15506879	15510564	.	-	.	Ledus.S3G195400
Ledus.S3	AUGUSTUS	transcript	15506879	15510564	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	stop_codon	15506876	15506878	.	-	0	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15506879	15507561	1	-	2	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15506879	15507561	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15507562	15507798	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15507799	15508069	0.98	-	0	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15507799	15508069	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15508070	15508160	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15508161	15508364	1	-	0	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15508161	15508364	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15508365	15508455	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15508456	15508616	1	-	2	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15508456	15508616	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15508617	15508797	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15508798	15509291	1	-	1	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15508798	15509291	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15509292	15509403	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15509404	15509462	1	-	0	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15509404	15509462	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15509463	15509556	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15509557	15509632	1	-	1	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15509557	15509632	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15509633	15510288	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15510289	15510467	1	-	0	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15510289	15510467	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15510468	15510555	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15510556	15510564	0.17	-	0	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15510556	15510564	.	-	.	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	start_codon	15510562	15510564	.	-	0	transcript_id "Ledus.S3G195400.t1"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	transcript	15506879	15510564	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	stop_codon	15506876	15506878	.	-	0	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15506879	15507561	1	-	2	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15506879	15507561	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15507562	15507729	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15507730	15507740	1	-	1	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15507730	15507740	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15507741	15507831	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15507832	15507883	0.57	-	2	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15507832	15507883	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15507884	15507966	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15507967	15508069	1	-	0	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15507967	15508069	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15508070	15508160	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15508161	15508364	1	-	0	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15508161	15508364	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15508365	15508455	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15508456	15508616	1	-	2	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15508456	15508616	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15508617	15508797	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15508798	15509291	1	-	1	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15508798	15509291	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15509292	15509403	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15509404	15509462	1	-	0	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15509404	15509462	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15509463	15509556	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15509557	15509632	1	-	1	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15509557	15509632	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15509633	15510288	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15510289	15510467	1	-	0	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15510289	15510467	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	intron	15510468	15510555	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	CDS	15510556	15510564	0.23	-	0	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	exon	15510556	15510564	.	-	.	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
Ledus.S3	AUGUSTUS	start_codon	15510562	15510564	.	-	0	transcript_id "Ledus.S3G195400.t2"; gene_id "Ledus.S3G195400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8161.t1 is derived from g12832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9509075	9509563	.	+	.	Ledus.S5G093900
Ledus.S5	AUGUSTUS	transcript	9509075	9509563	.	+	.	transcript_id "Ledus.S5G093900.t1"; gene_id "Ledus.S5G093900"
Ledus.S5	AUGUSTUS	start_codon	9509075	9509077	.	+	0	transcript_id "Ledus.S5G093900.t1"; gene_id "Ledus.S5G093900"
Ledus.S5	AUGUSTUS	CDS	9509075	9509219	1	+	0	transcript_id "Ledus.S5G093900.t1"; gene_id "Ledus.S5G093900"
Ledus.S5	AUGUSTUS	exon	9509075	9509219	.	+	.	transcript_id "Ledus.S5G093900.t1"; gene_id "Ledus.S5G093900"
Ledus.S5	AUGUSTUS	intron	9509220	9509318	.	+	.	transcript_id "Ledus.S5G093900.t1"; gene_id "Ledus.S5G093900"
Ledus.S5	AUGUSTUS	CDS	9509319	9509372	1	+	2	transcript_id "Ledus.S5G093900.t1"; gene_id "Ledus.S5G093900"
Ledus.S5	AUGUSTUS	exon	9509319	9509372	.	+	.	transcript_id "Ledus.S5G093900.t1"; gene_id "Ledus.S5G093900"
Ledus.S5	AUGUSTUS	intron	9509373	9509531	.	+	.	transcript_id "Ledus.S5G093900.t1"; gene_id "Ledus.S5G093900"
Ledus.S5	AUGUSTUS	CDS	9509532	9509563	0.98	+	2	transcript_id "Ledus.S5G093900.t1"; gene_id "Ledus.S5G093900"
Ledus.S5	AUGUSTUS	exon	9509532	9509563	.	+	.	transcript_id "Ledus.S5G093900.t1"; gene_id "Ledus.S5G093900"
Ledus.S5	AUGUSTUS	stop_codon	9509564	9509566	.	+	0	transcript_id "Ledus.S5G093900.t1"; gene_id "Ledus.S5G093900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7647.t1 is derived from g12318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4804558	4805849	.	-	.	Ledus.S5G042500
Ledus.S5	AUGUSTUS	transcript	4804558	4805849	.	-	.	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	stop_codon	4804555	4804557	.	-	0	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	CDS	4804558	4804759	0.77	-	1	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	exon	4804558	4804759	.	-	.	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	intron	4804760	4804896	.	-	.	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	CDS	4804897	4805001	0.77	-	1	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	exon	4804897	4805001	.	-	.	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	intron	4805002	4805130	.	-	.	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	CDS	4805131	4805234	1	-	0	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	exon	4805131	4805234	.	-	.	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	intron	4805235	4805405	.	-	.	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	CDS	4805406	4805849	0.24	-	0	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	exon	4805406	4805849	.	-	.	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
Ledus.S5	AUGUSTUS	start_codon	4805847	4805849	.	-	0	transcript_id "Ledus.S5G042500.t1"; gene_id "Ledus.S5G042500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11235.t1 is derived from g4853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2860563	2862098	.	+	.	Ledus.S4G039100
Ledus.S4	AUGUSTUS	transcript	2860563	2862098	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	start_codon	2860563	2860565	.	+	0	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	CDS	2860563	2860806	0.98	+	0	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	exon	2860563	2860806	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	intron	2860807	2860921	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	CDS	2860922	2860992	1	+	2	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	exon	2860922	2860992	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	intron	2860993	2861120	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	CDS	2861121	2861202	1	+	0	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	exon	2861121	2861202	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	intron	2861203	2861342	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	CDS	2861343	2861452	1	+	2	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	exon	2861343	2861452	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	intron	2861453	2861597	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	CDS	2861598	2861675	1	+	0	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	exon	2861598	2861675	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	intron	2861676	2861807	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	CDS	2861808	2861924	0.87	+	0	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	exon	2861808	2861924	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	intron	2861925	2862038	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	CDS	2862039	2862098	0.83	+	0	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	exon	2862039	2862098	.	+	.	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
Ledus.S4	AUGUSTUS	stop_codon	2862099	2862101	.	+	0	transcript_id "Ledus.S4G039100.t1"; gene_id "Ledus.S4G039100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9674.t1 is derived from g10704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8974349	8975970	.	+	.	Ledus.S3G115100
Ledus.S3	AUGUSTUS	transcript	8974349	8975970	.	+	.	transcript_id "Ledus.S3G115100.t1"; gene_id "Ledus.S3G115100"
Ledus.S3	AUGUSTUS	start_codon	8974349	8974351	.	+	0	transcript_id "Ledus.S3G115100.t1"; gene_id "Ledus.S3G115100"
Ledus.S3	AUGUSTUS	CDS	8974349	8975664	0.99	+	0	transcript_id "Ledus.S3G115100.t1"; gene_id "Ledus.S3G115100"
Ledus.S3	AUGUSTUS	exon	8974349	8975664	.	+	.	transcript_id "Ledus.S3G115100.t1"; gene_id "Ledus.S3G115100"
Ledus.S3	AUGUSTUS	intron	8975665	8975751	.	+	.	transcript_id "Ledus.S3G115100.t1"; gene_id "Ledus.S3G115100"
Ledus.S3	AUGUSTUS	CDS	8975752	8975811	0.99	+	1	transcript_id "Ledus.S3G115100.t1"; gene_id "Ledus.S3G115100"
Ledus.S3	AUGUSTUS	exon	8975752	8975811	.	+	.	transcript_id "Ledus.S3G115100.t1"; gene_id "Ledus.S3G115100"
Ledus.S3	AUGUSTUS	intron	8975812	8975906	.	+	.	transcript_id "Ledus.S3G115100.t1"; gene_id "Ledus.S3G115100"
Ledus.S3	AUGUSTUS	CDS	8975907	8975970	1	+	1	transcript_id "Ledus.S3G115100.t1"; gene_id "Ledus.S3G115100"
Ledus.S3	AUGUSTUS	exon	8975907	8975970	.	+	.	transcript_id "Ledus.S3G115100.t1"; gene_id "Ledus.S3G115100"
Ledus.S3	AUGUSTUS	stop_codon	8975971	8975973	.	+	0	transcript_id "Ledus.S3G115100.t1"; gene_id "Ledus.S3G115100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2035.t1 is derived from g8898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14271769	14274237	.	-	.	Ledus.S2G191700
Ledus.S2	AUGUSTUS	transcript	14271769	14274237	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	stop_codon	14271766	14271768	.	-	0	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14271769	14271829	0.98	-	1	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14271769	14271829	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14271830	14271906	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14271907	14272019	1	-	0	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14271907	14272019	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14272020	14272105	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14272106	14272186	1	-	0	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14272106	14272186	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14272187	14272278	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14272279	14272331	1	-	2	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14272279	14272331	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14272332	14272424	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14272425	14272533	1	-	0	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14272425	14272533	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14272534	14272687	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14272688	14272747	1	-	0	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14272688	14272747	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14272748	14272934	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14272935	14273041	0.57	-	2	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14272935	14273041	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14273042	14273132	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14273133	14273220	0.87	-	0	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14273133	14273220	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14273221	14274108	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14274109	14274237	0.82	-	0	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14274109	14274237	.	-	.	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	start_codon	14274235	14274237	.	-	0	transcript_id "Ledus.S2G191700.t1"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	transcript	14271769	14274143	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	stop_codon	14271766	14271768	.	-	0	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14271769	14271829	0.97	-	1	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14271769	14271829	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14271830	14271906	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14271907	14272019	1	-	0	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14271907	14272019	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14272020	14272105	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14272106	14272186	1	-	0	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14272106	14272186	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14272187	14272278	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14272279	14272331	1	-	2	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14272279	14272331	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14272332	14272424	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14272425	14272533	1	-	0	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14272425	14272533	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14272534	14272687	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14272688	14272747	1	-	0	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14272688	14272747	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14272748	14272934	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14272935	14273041	0.65	-	2	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14272935	14273041	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14273042	14273132	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14273133	14273196	0.89	-	0	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14273133	14273196	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14273197	14273257	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14273258	14273294	0.46	-	1	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14273258	14273294	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	intron	14273295	14274108	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	CDS	14274109	14274143	0.6	-	0	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	exon	14274109	14274143	.	-	.	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
Ledus.S2	AUGUSTUS	start_codon	14274141	14274143	.	-	0	transcript_id "Ledus.S2G191700.t2"; gene_id "Ledus.S2G191700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10666.t1 is derived from g11696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16938556	16942896	.	-	.	Ledus.S3G214300
Ledus.S3	AUGUSTUS	transcript	16938556	16942575	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	stop_codon	16938553	16938555	.	-	0	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16938556	16938780	0.97	-	0	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16938556	16938780	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16938781	16938865	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16938866	16938988	1	-	0	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16938866	16938988	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16938989	16939067	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939068	16939199	1	-	0	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939068	16939199	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939200	16939282	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939283	16939366	1	-	0	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939283	16939366	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939367	16939456	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939457	16939543	0.56	-	0	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939457	16939543	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939544	16939659	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939660	16939741	0.99	-	1	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939660	16939741	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939742	16939909	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939910	16939980	1	-	0	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939910	16939980	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939981	16940064	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16940065	16940186	1	-	2	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16940065	16940186	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16940187	16940339	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16940340	16940580	1	-	0	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16940340	16940580	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16940581	16940773	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16940774	16940945	1	-	1	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16940774	16940945	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16940946	16941030	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16941031	16941179	1	-	0	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16941031	16941179	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16941180	16941307	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16941308	16941425	1	-	1	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16941308	16941425	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16941426	16941519	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16941520	16941681	1	-	1	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16941520	16941681	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16941682	16941828	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16941829	16942084	0.68	-	2	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16941829	16942084	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16942085	16942526	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16942527	16942575	0.12	-	0	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16942527	16942575	.	-	.	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	start_codon	16942573	16942575	.	-	0	transcript_id "Ledus.S3G214300.t1"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	transcript	16938556	16942575	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	stop_codon	16938553	16938555	.	-	0	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16938556	16938780	0.95	-	0	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16938556	16938780	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16938781	16938865	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16938866	16938988	1	-	0	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16938866	16938988	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16938989	16939067	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939068	16939199	1	-	0	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939068	16939199	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939200	16939282	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939283	16939366	1	-	0	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939283	16939366	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939367	16939456	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939457	16939543	0.57	-	0	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939457	16939543	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939544	16939659	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939660	16939741	1	-	1	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939660	16939741	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939742	16939909	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939910	16939980	1	-	0	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939910	16939980	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939981	16940064	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16940065	16940095	0.77	-	1	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16940065	16940095	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16940096	16940162	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16940163	16940186	0.77	-	1	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16940163	16940186	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16940187	16940265	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16940266	16940284	0.98	-	2	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16940266	16940284	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16940285	16940339	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16940340	16940580	0.8	-	0	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16940340	16940580	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16940581	16940773	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16940774	16940945	1	-	1	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16940774	16940945	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16940946	16941030	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16941031	16941179	1	-	0	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16941031	16941179	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16941180	16941307	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16941308	16941425	1	-	1	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16941308	16941425	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16941426	16941519	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16941520	16941681	1	-	1	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16941520	16941681	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16941682	16941828	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16941829	16942084	0.79	-	2	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16941829	16942084	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16942085	16942526	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16942527	16942575	0.17	-	0	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16942527	16942575	.	-	.	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	start_codon	16942573	16942575	.	-	0	transcript_id "Ledus.S3G214300.t2"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	transcript	16938556	16942896	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	stop_codon	16938553	16938555	.	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16938556	16938780	0.93	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16938556	16938780	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16938781	16938865	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16938866	16938988	1	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16938866	16938988	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16938989	16939067	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939068	16939199	1	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939068	16939199	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939200	16939282	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939283	16939366	1	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939283	16939366	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939367	16939456	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939457	16939543	0.59	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939457	16939543	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939544	16939659	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939660	16939741	1	-	1	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939660	16939741	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939742	16939909	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16939910	16939980	1	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16939910	16939980	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16939981	16940064	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16940065	16940186	0.58	-	2	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16940065	16940186	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16940187	16940339	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16940340	16940580	0.96	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16940340	16940580	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16940581	16940773	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16940774	16940945	1	-	1	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16940774	16940945	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16940946	16941030	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16941031	16941179	1	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16941031	16941179	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16941180	16941307	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16941308	16941425	1	-	1	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16941308	16941425	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16941426	16941519	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16941520	16941681	1	-	1	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16941520	16941681	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16941682	16941828	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16941829	16942253	0.94	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16941829	16942253	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16942254	16942526	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16942527	16942598	0.51	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16942527	16942598	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	intron	16942599	16942686	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	CDS	16942687	16942896	0.11	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	exon	16942687	16942896	.	-	.	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
Ledus.S3	AUGUSTUS	start_codon	16942894	16942896	.	-	0	transcript_id "Ledus.S3G214300.t3"; gene_id "Ledus.S3G214300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4149.t1 is derived from g1585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14966523	14966855	.	+	.	Ledus.S1G157000
Ledus.S1	AUGUSTUS	transcript	14966523	14966855	.	+	.	transcript_id "Ledus.S1G157000.t1"; gene_id "Ledus.S1G157000"
Ledus.S1	AUGUSTUS	start_codon	14966523	14966525	.	+	0	transcript_id "Ledus.S1G157000.t1"; gene_id "Ledus.S1G157000"
Ledus.S1	AUGUSTUS	CDS	14966523	14966855	0.37	+	0	transcript_id "Ledus.S1G157000.t1"; gene_id "Ledus.S1G157000"
Ledus.S1	AUGUSTUS	exon	14966523	14966855	.	+	.	transcript_id "Ledus.S1G157000.t1"; gene_id "Ledus.S1G157000"
Ledus.S1	AUGUSTUS	stop_codon	14966856	14966858	.	+	0	transcript_id "Ledus.S1G157000.t1"; gene_id "Ledus.S1G157000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10155.t1 is derived from g11185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13367921	13368782	.	+	.	Ledus.S3G163200
Ledus.S3	AUGUSTUS	transcript	13367921	13368782	.	+	.	transcript_id "Ledus.S3G163200.t1"; gene_id "Ledus.S3G163200"
Ledus.S3	AUGUSTUS	start_codon	13367921	13367923	.	+	0	transcript_id "Ledus.S3G163200.t1"; gene_id "Ledus.S3G163200"
Ledus.S3	AUGUSTUS	CDS	13367921	13367958	0.99	+	0	transcript_id "Ledus.S3G163200.t1"; gene_id "Ledus.S3G163200"
Ledus.S3	AUGUSTUS	exon	13367921	13367958	.	+	.	transcript_id "Ledus.S3G163200.t1"; gene_id "Ledus.S3G163200"
Ledus.S3	AUGUSTUS	intron	13367959	13368034	.	+	.	transcript_id "Ledus.S3G163200.t1"; gene_id "Ledus.S3G163200"
Ledus.S3	AUGUSTUS	CDS	13368035	13368782	0.44	+	1	transcript_id "Ledus.S3G163200.t1"; gene_id "Ledus.S3G163200"
Ledus.S3	AUGUSTUS	exon	13368035	13368782	.	+	.	transcript_id "Ledus.S3G163200.t1"; gene_id "Ledus.S3G163200"
Ledus.S3	AUGUSTUS	stop_codon	13368783	13368785	.	+	0	transcript_id "Ledus.S3G163200.t1"; gene_id "Ledus.S3G163200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1581.t1 is derived from g8442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11107822	11111682	.	-	.	Ledus.S2G146300
Ledus.S2	AUGUSTUS	transcript	11107822	11111682	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	stop_codon	11107819	11107821	.	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11107822	11107959	1	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11107822	11107959	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	intron	11107960	11108049	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11108050	11108280	1	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11108050	11108280	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	intron	11108281	11108396	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11108397	11108705	1	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11108397	11108705	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	intron	11108706	11108840	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11108841	11109214	1	-	2	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11108841	11109214	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	intron	11109215	11109335	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11109336	11109423	1	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11109336	11109423	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	intron	11109424	11109549	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11109550	11109693	1	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11109550	11109693	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	intron	11109694	11109774	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11109775	11109900	1	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11109775	11109900	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	intron	11109901	11110057	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11110058	11110206	0.94	-	2	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11110058	11110206	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	intron	11110207	11110321	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11110322	11110427	0.86	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11110322	11110427	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	intron	11110428	11110528	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11110529	11110672	1	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11110529	11110672	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	intron	11110673	11110797	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11110798	11110974	0.99	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11110798	11110974	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	intron	11110975	11111131	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11111132	11111281	1	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11111132	11111281	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	intron	11111282	11111373	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	CDS	11111374	11111682	0.74	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	exon	11111374	11111682	.	-	.	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
Ledus.S2	AUGUSTUS	start_codon	11111680	11111682	.	-	0	transcript_id "Ledus.S2G146300.t1"; gene_id "Ledus.S2G146300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3723.t1 is derived from g1159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11191404	11192548	.	+	.	Ledus.S1G114400
Ledus.S1	AUGUSTUS	transcript	11191404	11192548	.	+	.	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	start_codon	11191404	11191406	.	+	0	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	CDS	11191404	11191505	0.94	+	0	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	exon	11191404	11191505	.	+	.	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	intron	11191506	11191610	.	+	.	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	CDS	11191611	11191689	0.67	+	0	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	exon	11191611	11191689	.	+	.	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	intron	11191690	11191782	.	+	.	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	CDS	11191783	11191952	1	+	2	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	exon	11191783	11191952	.	+	.	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	intron	11191953	11192069	.	+	.	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	CDS	11192070	11192117	0.94	+	0	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	exon	11192070	11192117	.	+	.	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	intron	11192118	11192230	.	+	.	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	CDS	11192231	11192329	0.94	+	0	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	exon	11192231	11192329	.	+	.	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	intron	11192330	11192413	.	+	.	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	CDS	11192414	11192548	1	+	0	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	exon	11192414	11192548	.	+	.	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
Ledus.S1	AUGUSTUS	stop_codon	11192549	11192551	.	+	0	transcript_id "Ledus.S1G114400.t1"; gene_id "Ledus.S1G114400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2326.t1 is derived from g9189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17190870	17192691	.	+	.	Ledus.S2G220800
Ledus.S2	AUGUSTUS	transcript	17190870	17192691	.	+	.	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	start_codon	17190870	17190872	.	+	0	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	CDS	17190870	17191292	0.51	+	0	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	exon	17190870	17191292	.	+	.	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	intron	17191293	17191521	.	+	.	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	CDS	17191522	17191546	0.44	+	0	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	exon	17191522	17191546	.	+	.	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	intron	17191547	17191624	.	+	.	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	CDS	17191625	17191977	0.95	+	2	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	exon	17191625	17191977	.	+	.	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	intron	17191978	17192052	.	+	.	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	CDS	17192053	17192264	0.98	+	0	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	exon	17192053	17192264	.	+	.	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	intron	17192265	17192363	.	+	.	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	CDS	17192364	17192691	1	+	1	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	exon	17192364	17192691	.	+	.	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
Ledus.S2	AUGUSTUS	stop_codon	17192692	17192694	.	+	0	transcript_id "Ledus.S2G220800.t1"; gene_id "Ledus.S2G220800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6675.t1 is derived from g4118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33078076	33078402	.	-	.	Ledus.S1G409600
Ledus.S1	AUGUSTUS	transcript	33078076	33078402	.	-	.	transcript_id "Ledus.S1G409600.t1"; gene_id "Ledus.S1G409600"
Ledus.S1	AUGUSTUS	stop_codon	33078073	33078075	.	-	0	transcript_id "Ledus.S1G409600.t1"; gene_id "Ledus.S1G409600"
Ledus.S1	AUGUSTUS	CDS	33078076	33078402	0.1	-	0	transcript_id "Ledus.S1G409600.t1"; gene_id "Ledus.S1G409600"
Ledus.S1	AUGUSTUS	exon	33078076	33078402	.	-	.	transcript_id "Ledus.S1G409600.t1"; gene_id "Ledus.S1G409600"
Ledus.S1	AUGUSTUS	start_codon	33078400	33078402	.	-	0	transcript_id "Ledus.S1G409600.t1"; gene_id "Ledus.S1G409600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7637.t1 is derived from g12308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4761981	4762756	.	-	.	Ledus.S5G041500
Ledus.S5	AUGUSTUS	transcript	4761981	4762756	.	-	.	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	stop_codon	4761978	4761980	.	-	0	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	CDS	4761981	4762068	0.7	-	1	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	exon	4761981	4762068	.	-	.	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	intron	4762069	4762199	.	-	.	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	CDS	4762200	4762303	0.74	-	0	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	exon	4762200	4762303	.	-	.	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	intron	4762304	4762394	.	-	.	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	CDS	4762395	4762447	0.78	-	2	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	exon	4762395	4762447	.	-	.	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	intron	4762448	4762665	.	-	.	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	CDS	4762666	4762756	0.29	-	0	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	exon	4762666	4762756	.	-	.	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
Ledus.S5	AUGUSTUS	start_codon	4762754	4762756	.	-	0	transcript_id "Ledus.S5G041500.t1"; gene_id "Ledus.S5G041500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7759.t1 is derived from g12430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6078365	6082034	.	-	.	Ledus.S5G053700
Ledus.S5	AUGUSTUS	transcript	6078365	6082034	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	stop_codon	6078362	6078364	.	-	0	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	CDS	6078365	6079171	0.22	-	0	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	exon	6078365	6079171	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	intron	6079172	6079261	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	CDS	6079262	6079368	0.85	-	2	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	exon	6079262	6079368	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	intron	6079369	6079486	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	CDS	6079487	6079556	1	-	0	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	exon	6079487	6079556	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	intron	6079557	6079662	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	CDS	6079663	6079756	0.99	-	1	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	exon	6079663	6079756	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	intron	6079757	6079868	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	CDS	6079869	6079966	1	-	0	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	exon	6079869	6079966	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	intron	6079967	6080114	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	CDS	6080115	6080183	1	-	0	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	exon	6080115	6080183	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	intron	6080184	6080361	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	CDS	6080362	6080576	1	-	2	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	exon	6080362	6080576	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	intron	6080577	6080692	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	CDS	6080693	6080741	0.84	-	0	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	exon	6080693	6080741	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	intron	6080742	6080840	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	CDS	6080841	6080963	1	-	0	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	exon	6080841	6080963	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	intron	6080964	6081065	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	CDS	6081066	6082034	0.38	-	0	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	exon	6081066	6082034	.	-	.	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
Ledus.S5	AUGUSTUS	start_codon	6082032	6082034	.	-	0	transcript_id "Ledus.S5G053700.t1"; gene_id "Ledus.S5G053700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5915.t1 is derived from g3358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27766204	27766899	.	+	.	Ledus.S1G333600
Ledus.S1	AUGUSTUS	transcript	27766204	27766899	.	+	.	transcript_id "Ledus.S1G333600.t1"; gene_id "Ledus.S1G333600"
Ledus.S1	AUGUSTUS	start_codon	27766204	27766206	.	+	0	transcript_id "Ledus.S1G333600.t1"; gene_id "Ledus.S1G333600"
Ledus.S1	AUGUSTUS	CDS	27766204	27766283	0.55	+	0	transcript_id "Ledus.S1G333600.t1"; gene_id "Ledus.S1G333600"
Ledus.S1	AUGUSTUS	exon	27766204	27766283	.	+	.	transcript_id "Ledus.S1G333600.t1"; gene_id "Ledus.S1G333600"
Ledus.S1	AUGUSTUS	intron	27766284	27766364	.	+	.	transcript_id "Ledus.S1G333600.t1"; gene_id "Ledus.S1G333600"
Ledus.S1	AUGUSTUS	CDS	27766365	27766386	0.63	+	1	transcript_id "Ledus.S1G333600.t1"; gene_id "Ledus.S1G333600"
Ledus.S1	AUGUSTUS	exon	27766365	27766386	.	+	.	transcript_id "Ledus.S1G333600.t1"; gene_id "Ledus.S1G333600"
Ledus.S1	AUGUSTUS	intron	27766387	27766479	.	+	.	transcript_id "Ledus.S1G333600.t1"; gene_id "Ledus.S1G333600"
Ledus.S1	AUGUSTUS	CDS	27766480	27766899	1	+	0	transcript_id "Ledus.S1G333600.t1"; gene_id "Ledus.S1G333600"
Ledus.S1	AUGUSTUS	exon	27766480	27766899	.	+	.	transcript_id "Ledus.S1G333600.t1"; gene_id "Ledus.S1G333600"
Ledus.S1	AUGUSTUS	stop_codon	27766900	27766902	.	+	0	transcript_id "Ledus.S1G333600.t1"; gene_id "Ledus.S1G333600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11824.t1 is derived from g5443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7007381	7007587	.	-	.	Ledus.S4G098000
Ledus.S4	AUGUSTUS	transcript	7007381	7007587	.	-	.	transcript_id "Ledus.S4G098000.t1"; gene_id "Ledus.S4G098000"
Ledus.S4	AUGUSTUS	stop_codon	7007378	7007380	.	-	0	transcript_id "Ledus.S4G098000.t1"; gene_id "Ledus.S4G098000"
Ledus.S4	AUGUSTUS	CDS	7007381	7007587	0.56	-	0	transcript_id "Ledus.S4G098000.t1"; gene_id "Ledus.S4G098000"
Ledus.S4	AUGUSTUS	exon	7007381	7007587	.	-	.	transcript_id "Ledus.S4G098000.t1"; gene_id "Ledus.S4G098000"
Ledus.S4	AUGUSTUS	start_codon	7007585	7007587	.	-	0	transcript_id "Ledus.S4G098000.t1"; gene_id "Ledus.S4G098000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12810.t1 is derived from g6432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14900968	14901525	.	+	.	Ledus.S4G196600
Ledus.S4	AUGUSTUS	transcript	14900968	14901525	.	+	.	transcript_id "Ledus.S4G196600.t1"; gene_id "Ledus.S4G196600"
Ledus.S4	AUGUSTUS	start_codon	14900968	14900970	.	+	0	transcript_id "Ledus.S4G196600.t1"; gene_id "Ledus.S4G196600"
Ledus.S4	AUGUSTUS	CDS	14900968	14901525	0.64	+	0	transcript_id "Ledus.S4G196600.t1"; gene_id "Ledus.S4G196600"
Ledus.S4	AUGUSTUS	exon	14900968	14901525	.	+	.	transcript_id "Ledus.S4G196600.t1"; gene_id "Ledus.S4G196600"
Ledus.S4	AUGUSTUS	stop_codon	14901526	14901528	.	+	0	transcript_id "Ledus.S4G196600.t1"; gene_id "Ledus.S4G196600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9017.t1 is derived from g10047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3879902	3881648	.	+	.	Ledus.S3G049400
Ledus.S3	AUGUSTUS	transcript	3879902	3881648	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	start_codon	3879902	3879904	.	+	0	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	CDS	3879902	3880012	0.96	+	0	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	exon	3879902	3880012	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	intron	3880013	3880101	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	CDS	3880102	3880215	1	+	0	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	exon	3880102	3880215	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	intron	3880216	3880297	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	CDS	3880298	3880395	1	+	0	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	exon	3880298	3880395	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	intron	3880396	3880477	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	CDS	3880478	3880525	1	+	1	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	exon	3880478	3880525	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	intron	3880526	3880604	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	CDS	3880605	3880682	1	+	1	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	exon	3880605	3880682	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	intron	3880683	3880764	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	CDS	3880765	3880843	0.96	+	1	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	exon	3880765	3880843	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	intron	3880844	3880961	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	CDS	3880962	3881066	0.95	+	0	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	exon	3880962	3881066	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	intron	3881067	3881178	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	CDS	3881179	3881267	1	+	0	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	exon	3881179	3881267	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	intron	3881268	3881391	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	CDS	3881392	3881463	0.99	+	1	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	exon	3881392	3881463	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	intron	3881464	3881569	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	CDS	3881570	3881648	1	+	1	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	exon	3881570	3881648	.	+	.	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
Ledus.S3	AUGUSTUS	stop_codon	3881649	3881651	.	+	0	transcript_id "Ledus.S3G049400.t1"; gene_id "Ledus.S3G049400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7141.t1 is derived from g6672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1733170	1734008	.	+	.	Ledus.C7G020200
Ledus.C7	AUGUSTUS	transcript	1733170	1734008	.	+	.	transcript_id "Ledus.C7G020200.t1"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	start_codon	1733170	1733172	.	+	0	transcript_id "Ledus.C7G020200.t1"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	CDS	1733170	1733299	0.63	+	0	transcript_id "Ledus.C7G020200.t1"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	exon	1733170	1733299	.	+	.	transcript_id "Ledus.C7G020200.t1"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	intron	1733300	1733445	.	+	.	transcript_id "Ledus.C7G020200.t1"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	CDS	1733446	1733616	1	+	2	transcript_id "Ledus.C7G020200.t1"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	exon	1733446	1733616	.	+	.	transcript_id "Ledus.C7G020200.t1"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	intron	1733617	1733955	.	+	.	transcript_id "Ledus.C7G020200.t1"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	CDS	1733956	1734008	0.99	+	2	transcript_id "Ledus.C7G020200.t1"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	exon	1733956	1734008	.	+	.	transcript_id "Ledus.C7G020200.t1"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	stop_codon	1734009	1734011	.	+	0	transcript_id "Ledus.C7G020200.t1"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	transcript	1733170	1734008	.	+	.	transcript_id "Ledus.C7G020200.t2"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	start_codon	1733170	1733172	.	+	0	transcript_id "Ledus.C7G020200.t2"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	CDS	1733170	1733299	0.58	+	0	transcript_id "Ledus.C7G020200.t2"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	exon	1733170	1733299	.	+	.	transcript_id "Ledus.C7G020200.t2"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	intron	1733300	1733445	.	+	.	transcript_id "Ledus.C7G020200.t2"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	CDS	1733446	1733616	1	+	2	transcript_id "Ledus.C7G020200.t2"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	exon	1733446	1733616	.	+	.	transcript_id "Ledus.C7G020200.t2"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	intron	1733617	1733952	.	+	.	transcript_id "Ledus.C7G020200.t2"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	CDS	1733953	1734008	1	+	2	transcript_id "Ledus.C7G020200.t2"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	exon	1733953	1734008	.	+	.	transcript_id "Ledus.C7G020200.t2"; gene_id "Ledus.C7G020200"
Ledus.C7	AUGUSTUS	stop_codon	1734009	1734011	.	+	0	transcript_id "Ledus.C7G020200.t2"; gene_id "Ledus.C7G020200"
# This transcript jg6552.t2 is derived from g3995.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6553.t1 is derived from g3996.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32272159	32273500	.	-	.	Ledus.S1G397400
Ledus.S1	AUGUSTUS	transcript	32272159	32273500	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	stop_codon	32272156	32272158	.	-	0	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	CDS	32272159	32272159	0.73	-	1	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	exon	32272159	32272159	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	intron	32272160	32272323	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	CDS	32272324	32272483	0.73	-	2	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	exon	32272324	32272483	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	intron	32272484	32272584	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	CDS	32272585	32272643	0.83	-	1	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	exon	32272585	32272643	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	intron	32272644	32272854	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	CDS	32272855	32272899	0.84	-	1	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	exon	32272855	32272899	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	intron	32272900	32273029	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	CDS	32273030	32273083	0.84	-	1	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	exon	32273030	32273083	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	intron	32273084	32273224	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	CDS	32273225	32273314	1	-	1	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	exon	32273225	32273314	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	intron	32273315	32273480	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	CDS	32273481	32273500	1	-	0	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	exon	32273481	32273500	.	-	.	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
Ledus.S1	AUGUSTUS	start_codon	32273498	32273500	.	-	0	transcript_id "Ledus.S1G397400.t1"; gene_id "Ledus.S1G397400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9189.t1 is derived from g10219.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5294975	5300261	.	+	.	Ledus.S3G066600
Ledus.S3	AUGUSTUS	transcript	5294975	5300261	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	start_codon	5294975	5294977	.	+	0	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	CDS	5294975	5295126	0.75	+	0	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	exon	5294975	5295126	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	intron	5295127	5295204	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	CDS	5295205	5295368	1	+	1	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	exon	5295205	5295368	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	intron	5295369	5295455	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	CDS	5295456	5295579	1	+	2	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	exon	5295456	5295579	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	intron	5295580	5295775	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	CDS	5295776	5295899	1	+	1	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	exon	5295776	5295899	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	intron	5295900	5295990	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	CDS	5295991	5296061	1	+	0	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	exon	5295991	5296061	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	intron	5296062	5296197	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	CDS	5296198	5299357	0.99	+	1	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	exon	5296198	5299357	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	intron	5299358	5299507	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	CDS	5299508	5299588	1	+	0	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	exon	5299508	5299588	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	intron	5299589	5299686	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	CDS	5299687	5299803	1	+	0	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	exon	5299687	5299803	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	intron	5299804	5299938	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	CDS	5299939	5300003	0.74	+	0	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	exon	5299939	5300003	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	intron	5300004	5300095	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	CDS	5300096	5300120	0.74	+	1	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	exon	5300096	5300120	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	intron	5300121	5300216	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	CDS	5300217	5300261	0.72	+	0	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	exon	5300217	5300261	.	+	.	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
Ledus.S3	AUGUSTUS	stop_codon	5300262	5300264	.	+	0	transcript_id "Ledus.S3G066600.t1"; gene_id "Ledus.S3G066600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13117.t1 is derived from g6927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6261097	6261402	.	+	.	Ledus.S6G017900
Ledus.S6	AUGUSTUS	transcript	6261097	6261402	.	+	.	transcript_id "Ledus.S6G017900.t1"; gene_id "Ledus.S6G017900"
Ledus.S6	AUGUSTUS	start_codon	6261097	6261099	.	+	0	transcript_id "Ledus.S6G017900.t1"; gene_id "Ledus.S6G017900"
Ledus.S6	AUGUSTUS	CDS	6261097	6261402	0.92	+	0	transcript_id "Ledus.S6G017900.t1"; gene_id "Ledus.S6G017900"
Ledus.S6	AUGUSTUS	exon	6261097	6261402	.	+	.	transcript_id "Ledus.S6G017900.t1"; gene_id "Ledus.S6G017900"
Ledus.S6	AUGUSTUS	stop_codon	6261403	6261405	.	+	0	transcript_id "Ledus.S6G017900.t1"; gene_id "Ledus.S6G017900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2816.t1 is derived from g250.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3914450	3918681	.	-	.	Ledus.S1G023700
Ledus.S1	AUGUSTUS	transcript	3914450	3918681	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	stop_codon	3914447	3914449	.	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3914450	3914458	0.98	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3914450	3914458	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3914459	3914625	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3914626	3914695	0.87	-	1	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3914626	3914695	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3914696	3915287	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3915288	3915387	0.81	-	2	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3915288	3915387	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3915388	3915561	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3915562	3915703	0.99	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3915562	3915703	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3915704	3915789	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3915790	3915834	1	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3915790	3915834	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3915835	3915956	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3915957	3916075	1	-	2	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3915957	3916075	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3916076	3916158	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3916159	3916252	1	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3916159	3916252	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3916253	3916349	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3916350	3916514	1	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3916350	3916514	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3916515	3916623	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3916624	3916770	0.77	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3916624	3916770	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3916771	3916900	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3916901	3916948	1	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3916901	3916948	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3916949	3917074	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3917075	3917287	0.92	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3917075	3917287	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3917288	3917404	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3917405	3917530	1	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3917405	3917530	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3917531	3917617	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3917618	3917689	0.98	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3917618	3917689	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3917690	3917802	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3917803	3918264	0.93	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3917803	3918264	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3918265	3918377	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3918378	3918437	1	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3918378	3918437	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3918438	3918531	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3918532	3918681	0.76	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3918532	3918681	.	-	.	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	start_codon	3918679	3918681	.	-	0	transcript_id "Ledus.S1G023700.t1"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	transcript	3914450	3918681	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	stop_codon	3914447	3914449	.	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3914450	3914458	0.99	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3914450	3914458	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3914459	3914625	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3914626	3914695	0.65	-	1	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3914626	3914695	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3914696	3915125	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3915126	3915183	0.43	-	2	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3915126	3915183	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3915184	3915287	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3915288	3915320	0.87	-	2	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3915288	3915320	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3915321	3915561	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3915562	3915703	1	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3915562	3915703	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3915704	3915789	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3915790	3915834	1	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3915790	3915834	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3915835	3915956	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3915957	3916075	1	-	2	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3915957	3916075	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3916076	3916158	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3916159	3916252	1	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3916159	3916252	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3916253	3916349	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3916350	3916514	1	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3916350	3916514	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3916515	3916623	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3916624	3916770	0.92	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3916624	3916770	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3916771	3916900	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3916901	3916948	1	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3916901	3916948	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3916949	3917074	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3917075	3917287	0.93	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3917075	3917287	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3917288	3917404	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3917405	3917530	1	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3917405	3917530	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3917531	3917617	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3917618	3917689	0.96	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3917618	3917689	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3917690	3917802	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3917803	3918264	0.9	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3917803	3918264	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3918265	3918377	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3918378	3918437	0.99	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3918378	3918437	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	intron	3918438	3918531	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	CDS	3918532	3918681	0.75	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	exon	3918532	3918681	.	-	.	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
Ledus.S1	AUGUSTUS	start_codon	3918679	3918681	.	-	0	transcript_id "Ledus.S1G023700.t2"; gene_id "Ledus.S1G023700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1598.t1 is derived from g8459.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11224313	11224771	.	-	.	Ledus.S2G148000
Ledus.S2	AUGUSTUS	transcript	11224313	11224771	.	-	.	transcript_id "Ledus.S2G148000.t1"; gene_id "Ledus.S2G148000"
Ledus.S2	AUGUSTUS	stop_codon	11224310	11224312	.	-	0	transcript_id "Ledus.S2G148000.t1"; gene_id "Ledus.S2G148000"
Ledus.S2	AUGUSTUS	CDS	11224313	11224771	0.66	-	0	transcript_id "Ledus.S2G148000.t1"; gene_id "Ledus.S2G148000"
Ledus.S2	AUGUSTUS	exon	11224313	11224771	.	-	.	transcript_id "Ledus.S2G148000.t1"; gene_id "Ledus.S2G148000"
Ledus.S2	AUGUSTUS	start_codon	11224769	11224771	.	-	0	transcript_id "Ledus.S2G148000.t1"; gene_id "Ledus.S2G148000"
# This transcript jg1141.t2 is derived from g8002.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1142.t1 is derived from g8003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7903276	7909752	.	+	.	Ledus.S2G102400
Ledus.S2	AUGUSTUS	transcript	7903276	7909752	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	start_codon	7903276	7903278	.	+	0	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7903276	7903416	0.94	+	0	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7903276	7903416	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7903417	7903678	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7903679	7903813	1	+	0	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7903679	7903813	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7903814	7904025	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7904026	7904105	0.99	+	0	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7904026	7904105	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7904106	7904224	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7904225	7904308	0.94	+	1	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7904225	7904308	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7904309	7904591	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7904592	7904679	1	+	1	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7904592	7904679	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7904680	7904792	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7904793	7904974	1	+	0	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7904793	7904974	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7904975	7905064	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7905065	7907117	0.87	+	1	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7905065	7907117	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7907118	7907267	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7907268	7907333	1	+	0	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7907268	7907333	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7907334	7907433	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7907434	7907491	0.73	+	0	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7907434	7907491	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7907492	7907657	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7907658	7907968	0.47	+	2	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7907658	7907968	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7907969	7908071	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7908072	7908236	0.99	+	0	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7908072	7908236	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7908237	7908336	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7908337	7908478	1	+	0	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7908337	7908478	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7908479	7908706	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7908707	7908789	1	+	2	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7908707	7908789	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7908790	7909004	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7909005	7909141	1	+	0	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7909005	7909141	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7909142	7909273	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7909274	7909382	1	+	1	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7909274	7909382	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	intron	7909383	7909545	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	CDS	7909546	7909752	0.65	+	0	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	exon	7909546	7909752	.	+	.	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
Ledus.S2	AUGUSTUS	stop_codon	7909753	7909755	.	+	0	transcript_id "Ledus.S2G102400.t1"; gene_id "Ledus.S2G102400"
# This transcript jg1845.t2 is derived from g8708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1846.t1 is derived from g8709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12929254	12931275	.	+	.	Ledus.S2G172800
Ledus.S2	AUGUSTUS	transcript	12929254	12931275	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	start_codon	12929254	12929256	.	+	0	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	CDS	12929254	12929500	0.71	+	0	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	exon	12929254	12929500	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	intron	12929501	12929757	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	CDS	12929758	12929924	0.98	+	2	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	exon	12929758	12929924	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	intron	12929925	12930000	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	CDS	12930001	12930182	0.99	+	0	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	exon	12930001	12930182	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	intron	12930183	12930290	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	CDS	12930291	12930399	0.99	+	1	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	exon	12930291	12930399	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	intron	12930400	12930539	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	CDS	12930540	12930832	0.54	+	0	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	exon	12930540	12930832	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	intron	12930833	12931031	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	CDS	12931032	12931089	0.97	+	1	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	exon	12931032	12931089	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	intron	12931090	12931182	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	CDS	12931183	12931275	0.63	+	0	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	exon	12931183	12931275	.	+	.	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
Ledus.S2	AUGUSTUS	stop_codon	12931276	12931278	.	+	0	transcript_id "Ledus.S2G172800.t1"; gene_id "Ledus.S2G172800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11889.t1 is derived from g5508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7551777	7553162	.	-	.	Ledus.S4G104500
Ledus.S4	AUGUSTUS	transcript	7551777	7553162	.	-	.	transcript_id "Ledus.S4G104500.t1"; gene_id "Ledus.S4G104500"
Ledus.S4	AUGUSTUS	stop_codon	7551774	7551776	.	-	0	transcript_id "Ledus.S4G104500.t1"; gene_id "Ledus.S4G104500"
Ledus.S4	AUGUSTUS	CDS	7551777	7552157	1	-	0	transcript_id "Ledus.S4G104500.t1"; gene_id "Ledus.S4G104500"
Ledus.S4	AUGUSTUS	exon	7551777	7552157	.	-	.	transcript_id "Ledus.S4G104500.t1"; gene_id "Ledus.S4G104500"
Ledus.S4	AUGUSTUS	intron	7552158	7552222	.	-	.	transcript_id "Ledus.S4G104500.t1"; gene_id "Ledus.S4G104500"
Ledus.S4	AUGUSTUS	CDS	7552223	7552454	0.99	-	1	transcript_id "Ledus.S4G104500.t1"; gene_id "Ledus.S4G104500"
Ledus.S4	AUGUSTUS	exon	7552223	7552454	.	-	.	transcript_id "Ledus.S4G104500.t1"; gene_id "Ledus.S4G104500"
Ledus.S4	AUGUSTUS	intron	7552455	7552530	.	-	.	transcript_id "Ledus.S4G104500.t1"; gene_id "Ledus.S4G104500"
Ledus.S4	AUGUSTUS	CDS	7552531	7553162	0.9	-	0	transcript_id "Ledus.S4G104500.t1"; gene_id "Ledus.S4G104500"
Ledus.S4	AUGUSTUS	exon	7552531	7553162	.	-	.	transcript_id "Ledus.S4G104500.t1"; gene_id "Ledus.S4G104500"
Ledus.S4	AUGUSTUS	start_codon	7553160	7553162	.	-	0	transcript_id "Ledus.S4G104500.t1"; gene_id "Ledus.S4G104500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12268.t1 is derived from g5888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10711508	10715146	.	+	.	Ledus.S4G142400
Ledus.S4	AUGUSTUS	transcript	10711508	10715146	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	start_codon	10711508	10711510	.	+	0	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	CDS	10711508	10712764	0.97	+	0	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	exon	10711508	10712764	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	intron	10712765	10712929	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	CDS	10712930	10713181	0.94	+	0	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	exon	10712930	10713181	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	intron	10713182	10713310	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	CDS	10713311	10713403	1	+	0	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	exon	10713311	10713403	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	intron	10713404	10713564	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	CDS	10713565	10713936	0.83	+	0	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	exon	10713565	10713936	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	intron	10713937	10714099	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	CDS	10714100	10714444	1	+	0	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	exon	10714100	10714444	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	intron	10714445	10714608	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	CDS	10714609	10714836	1	+	0	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	exon	10714609	10714836	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	intron	10714837	10714921	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	CDS	10714922	10715146	1	+	0	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	exon	10714922	10715146	.	+	.	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
Ledus.S4	AUGUSTUS	stop_codon	10715147	10715149	.	+	0	transcript_id "Ledus.S4G142400.t1"; gene_id "Ledus.S4G142400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12458.t1 is derived from g6079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12093724	12094786	.	-	.	Ledus.S4G161400
Ledus.S4	AUGUSTUS	transcript	12093724	12094786	.	-	.	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	stop_codon	12093721	12093723	.	-	0	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	CDS	12093724	12093793	0.95	-	1	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	exon	12093724	12093793	.	-	.	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	intron	12093794	12093871	.	-	.	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	CDS	12093872	12094191	1	-	0	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	exon	12093872	12094191	.	-	.	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	intron	12094192	12094276	.	-	.	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	CDS	12094277	12094476	1	-	2	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	exon	12094277	12094476	.	-	.	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	intron	12094477	12094554	.	-	.	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	CDS	12094555	12094786	1	-	0	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	exon	12094555	12094786	.	-	.	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
Ledus.S4	AUGUSTUS	start_codon	12094784	12094786	.	-	0	transcript_id "Ledus.S4G161400.t1"; gene_id "Ledus.S4G161400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9194.t1 is derived from g10224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5308844	5309879	.	+	.	Ledus.S3G067100
Ledus.S3	AUGUSTUS	transcript	5308844	5309879	.	+	.	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	start_codon	5308844	5308846	.	+	0	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	CDS	5308844	5309107	0.99	+	0	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	exon	5308844	5309107	.	+	.	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	intron	5309108	5309204	.	+	.	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	CDS	5309205	5309306	0.94	+	0	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	exon	5309205	5309306	.	+	.	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	intron	5309307	5309410	.	+	.	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	CDS	5309411	5309464	1	+	0	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	exon	5309411	5309464	.	+	.	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	intron	5309465	5309541	.	+	.	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	CDS	5309542	5309604	1	+	0	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	exon	5309542	5309604	.	+	.	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	intron	5309605	5309701	.	+	.	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	CDS	5309702	5309764	1	+	0	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	exon	5309702	5309764	.	+	.	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	intron	5309765	5309843	.	+	.	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	CDS	5309844	5309879	1	+	0	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	exon	5309844	5309879	.	+	.	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
Ledus.S3	AUGUSTUS	stop_codon	5309880	5309882	.	+	0	transcript_id "Ledus.S3G067100.t1"; gene_id "Ledus.S3G067100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5319.t1 is derived from g2758.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23288148	23288443	.	+	.	Ledus.S1G274000
Ledus.S1	AUGUSTUS	transcript	23288148	23288443	.	+	.	transcript_id "Ledus.S1G274000.t1"; gene_id "Ledus.S1G274000"
Ledus.S1	AUGUSTUS	start_codon	23288148	23288150	.	+	0	transcript_id "Ledus.S1G274000.t1"; gene_id "Ledus.S1G274000"
Ledus.S1	AUGUSTUS	CDS	23288148	23288163	0.73	+	0	transcript_id "Ledus.S1G274000.t1"; gene_id "Ledus.S1G274000"
Ledus.S1	AUGUSTUS	exon	23288148	23288163	.	+	.	transcript_id "Ledus.S1G274000.t1"; gene_id "Ledus.S1G274000"
Ledus.S1	AUGUSTUS	intron	23288164	23288249	.	+	.	transcript_id "Ledus.S1G274000.t1"; gene_id "Ledus.S1G274000"
Ledus.S1	AUGUSTUS	CDS	23288250	23288443	0.88	+	2	transcript_id "Ledus.S1G274000.t1"; gene_id "Ledus.S1G274000"
Ledus.S1	AUGUSTUS	exon	23288250	23288443	.	+	.	transcript_id "Ledus.S1G274000.t1"; gene_id "Ledus.S1G274000"
Ledus.S1	AUGUSTUS	stop_codon	23288444	23288446	.	+	0	transcript_id "Ledus.S1G274000.t1"; gene_id "Ledus.S1G274000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9719.t1 is derived from g10749.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9402868	9403908	.	+	.	Ledus.S3G119600
Ledus.S3	AUGUSTUS	transcript	9402868	9403908	.	+	.	transcript_id "Ledus.S3G119600.t1"; gene_id "Ledus.S3G119600"
Ledus.S3	AUGUSTUS	start_codon	9402868	9402870	.	+	0	transcript_id "Ledus.S3G119600.t1"; gene_id "Ledus.S3G119600"
Ledus.S3	AUGUSTUS	CDS	9402868	9403908	0.56	+	0	transcript_id "Ledus.S3G119600.t1"; gene_id "Ledus.S3G119600"
Ledus.S3	AUGUSTUS	exon	9402868	9403908	.	+	.	transcript_id "Ledus.S3G119600.t1"; gene_id "Ledus.S3G119600"
Ledus.S3	AUGUSTUS	stop_codon	9403909	9403911	.	+	0	transcript_id "Ledus.S3G119600.t1"; gene_id "Ledus.S3G119600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9640.t1 is derived from g10670.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8564035	8566264	.	+	.	Ledus.S3G111700
Ledus.S3	AUGUSTUS	transcript	8564035	8566264	.	+	.	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	start_codon	8564035	8564037	.	+	0	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	CDS	8564035	8564164	0.52	+	0	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	exon	8564035	8564164	.	+	.	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	intron	8564165	8564302	.	+	.	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	CDS	8564303	8564499	1	+	2	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	exon	8564303	8564499	.	+	.	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	intron	8564500	8564591	.	+	.	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	CDS	8564592	8564781	1	+	0	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	exon	8564592	8564781	.	+	.	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	intron	8564782	8564865	.	+	.	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	CDS	8564866	8565257	0.98	+	2	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	exon	8564866	8565257	.	+	.	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	intron	8565258	8565610	.	+	.	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	CDS	8565611	8566264	0.92	+	0	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	exon	8565611	8566264	.	+	.	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
Ledus.S3	AUGUSTUS	stop_codon	8566265	8566267	.	+	0	transcript_id "Ledus.S3G111700.t1"; gene_id "Ledus.S3G111700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1039.t1 is derived from g7900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6910977	6911542	.	-	.	Ledus.S2G092100
Ledus.S2	AUGUSTUS	transcript	6910977	6911542	.	-	.	transcript_id "Ledus.S2G092100.t1"; gene_id "Ledus.S2G092100"
Ledus.S2	AUGUSTUS	stop_codon	6910974	6910976	.	-	0	transcript_id "Ledus.S2G092100.t1"; gene_id "Ledus.S2G092100"
Ledus.S2	AUGUSTUS	CDS	6910977	6911034	0.99	-	1	transcript_id "Ledus.S2G092100.t1"; gene_id "Ledus.S2G092100"
Ledus.S2	AUGUSTUS	exon	6910977	6911034	.	-	.	transcript_id "Ledus.S2G092100.t1"; gene_id "Ledus.S2G092100"
Ledus.S2	AUGUSTUS	intron	6911035	6911121	.	-	.	transcript_id "Ledus.S2G092100.t1"; gene_id "Ledus.S2G092100"
Ledus.S2	AUGUSTUS	CDS	6911122	6911154	0.8	-	1	transcript_id "Ledus.S2G092100.t1"; gene_id "Ledus.S2G092100"
Ledus.S2	AUGUSTUS	exon	6911122	6911154	.	-	.	transcript_id "Ledus.S2G092100.t1"; gene_id "Ledus.S2G092100"
Ledus.S2	AUGUSTUS	intron	6911155	6911282	.	-	.	transcript_id "Ledus.S2G092100.t1"; gene_id "Ledus.S2G092100"
Ledus.S2	AUGUSTUS	CDS	6911283	6911542	0.67	-	0	transcript_id "Ledus.S2G092100.t1"; gene_id "Ledus.S2G092100"
Ledus.S2	AUGUSTUS	exon	6911283	6911542	.	-	.	transcript_id "Ledus.S2G092100.t1"; gene_id "Ledus.S2G092100"
Ledus.S2	AUGUSTUS	start_codon	6911540	6911542	.	-	0	transcript_id "Ledus.S2G092100.t1"; gene_id "Ledus.S2G092100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2453.t1 is derived from g9316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18207383	18209379	.	+	.	Ledus.S2G233500
Ledus.S2	AUGUSTUS	transcript	18207383	18209379	.	+	.	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	start_codon	18207383	18207385	.	+	0	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	CDS	18207383	18207584	0.85	+	0	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	exon	18207383	18207584	.	+	.	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	intron	18207585	18207679	.	+	.	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	CDS	18207680	18207842	0.58	+	2	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	exon	18207680	18207842	.	+	.	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	intron	18207843	18208360	.	+	.	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	CDS	18208361	18208400	0.44	+	1	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	exon	18208361	18208400	.	+	.	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	intron	18208401	18208513	.	+	.	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	CDS	18208514	18208797	0.59	+	0	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	exon	18208514	18208797	.	+	.	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	intron	18208798	18208913	.	+	.	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	CDS	18208914	18209379	0.89	+	1	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	exon	18208914	18209379	.	+	.	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
Ledus.S2	AUGUSTUS	stop_codon	18209380	18209382	.	+	0	transcript_id "Ledus.S2G233500.t1"; gene_id "Ledus.S2G233500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7590.t1 is derived from g12261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4256367	4258626	.	-	.	Ledus.S5G036800
Ledus.S5	AUGUSTUS	transcript	4256367	4258626	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	stop_codon	4256364	4256366	.	-	0	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	CDS	4256367	4256621	1	-	0	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	exon	4256367	4256621	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	intron	4256622	4256708	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	CDS	4256709	4256801	1	-	0	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	exon	4256709	4256801	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	intron	4256802	4256893	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	CDS	4256894	4256966	1	-	1	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	exon	4256894	4256966	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	intron	4256967	4257065	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	CDS	4257066	4257099	1	-	2	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	exon	4257066	4257099	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	intron	4257100	4257208	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	CDS	4257209	4257264	1	-	1	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	exon	4257209	4257264	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	intron	4257265	4257394	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	CDS	4257395	4257447	1	-	0	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	exon	4257395	4257447	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	intron	4257448	4257546	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	CDS	4257547	4257606	1	-	0	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	exon	4257547	4257606	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	intron	4257607	4257785	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	CDS	4257786	4257825	1	-	1	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	exon	4257786	4257825	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	intron	4257826	4258264	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	CDS	4258265	4258626	0.9	-	0	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	exon	4258265	4258626	.	-	.	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
Ledus.S5	AUGUSTUS	start_codon	4258624	4258626	.	-	0	transcript_id "Ledus.S5G036800.t1"; gene_id "Ledus.S5G036800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2434.t1 is derived from g9297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18102833	18104429	.	-	.	Ledus.S2G231600
Ledus.S2	AUGUSTUS	transcript	18102833	18104429	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	stop_codon	18102830	18102832	.	-	0	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	CDS	18102833	18102869	0.51	-	1	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	exon	18102833	18102869	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	intron	18102870	18102990	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	CDS	18102991	18103064	0.48	-	0	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	exon	18102991	18103064	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	intron	18103065	18103255	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	CDS	18103256	18103306	0.89	-	0	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	exon	18103256	18103306	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	intron	18103307	18103403	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	CDS	18103404	18103512	1	-	1	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	exon	18103404	18103512	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	intron	18103513	18103607	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	CDS	18103608	18103715	1	-	1	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	exon	18103608	18103715	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	intron	18103716	18103789	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	CDS	18103790	18103890	1	-	0	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	exon	18103790	18103890	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	intron	18103891	18103979	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	CDS	18103980	18104074	1	-	2	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	exon	18103980	18104074	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	intron	18104075	18104155	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	CDS	18104156	18104429	1	-	0	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	exon	18104156	18104429	.	-	.	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
Ledus.S2	AUGUSTUS	start_codon	18104427	18104429	.	-	0	transcript_id "Ledus.S2G231600.t1"; gene_id "Ledus.S2G231600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10153.t1 is derived from g11183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13360928	13361362	.	-	.	Ledus.S3G163000
Ledus.S3	AUGUSTUS	transcript	13360928	13361362	.	-	.	transcript_id "Ledus.S3G163000.t1"; gene_id "Ledus.S3G163000"
Ledus.S3	AUGUSTUS	stop_codon	13360925	13360927	.	-	0	transcript_id "Ledus.S3G163000.t1"; gene_id "Ledus.S3G163000"
Ledus.S3	AUGUSTUS	CDS	13360928	13361362	0.47	-	0	transcript_id "Ledus.S3G163000.t1"; gene_id "Ledus.S3G163000"
Ledus.S3	AUGUSTUS	exon	13360928	13361362	.	-	.	transcript_id "Ledus.S3G163000.t1"; gene_id "Ledus.S3G163000"
Ledus.S3	AUGUSTUS	start_codon	13361360	13361362	.	-	0	transcript_id "Ledus.S3G163000.t1"; gene_id "Ledus.S3G163000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10067.t1 is derived from g11097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12476012	12477425	.	+	.	Ledus.S3G154400
Ledus.S3	AUGUSTUS	transcript	12476012	12477425	.	+	.	transcript_id "Ledus.S3G154400.t1"; gene_id "Ledus.S3G154400"
Ledus.S3	AUGUSTUS	start_codon	12476012	12476014	.	+	0	transcript_id "Ledus.S3G154400.t1"; gene_id "Ledus.S3G154400"
Ledus.S3	AUGUSTUS	CDS	12476012	12476408	0.44	+	0	transcript_id "Ledus.S3G154400.t1"; gene_id "Ledus.S3G154400"
Ledus.S3	AUGUSTUS	exon	12476012	12476408	.	+	.	transcript_id "Ledus.S3G154400.t1"; gene_id "Ledus.S3G154400"
Ledus.S3	AUGUSTUS	intron	12476409	12476517	.	+	.	transcript_id "Ledus.S3G154400.t1"; gene_id "Ledus.S3G154400"
Ledus.S3	AUGUSTUS	CDS	12476518	12477425	0.89	+	2	transcript_id "Ledus.S3G154400.t1"; gene_id "Ledus.S3G154400"
Ledus.S3	AUGUSTUS	exon	12476518	12477425	.	+	.	transcript_id "Ledus.S3G154400.t1"; gene_id "Ledus.S3G154400"
Ledus.S3	AUGUSTUS	stop_codon	12477426	12477428	.	+	0	transcript_id "Ledus.S3G154400.t1"; gene_id "Ledus.S3G154400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3110.t1 is derived from g545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6011296	6011679	.	-	.	Ledus.S1G053100
Ledus.S1	AUGUSTUS	transcript	6011296	6011679	.	-	.	transcript_id "Ledus.S1G053100.t1"; gene_id "Ledus.S1G053100"
Ledus.S1	AUGUSTUS	stop_codon	6011293	6011295	.	-	0	transcript_id "Ledus.S1G053100.t1"; gene_id "Ledus.S1G053100"
Ledus.S1	AUGUSTUS	CDS	6011296	6011679	0.56	-	0	transcript_id "Ledus.S1G053100.t1"; gene_id "Ledus.S1G053100"
Ledus.S1	AUGUSTUS	exon	6011296	6011679	.	-	.	transcript_id "Ledus.S1G053100.t1"; gene_id "Ledus.S1G053100"
Ledus.S1	AUGUSTUS	start_codon	6011677	6011679	.	-	0	transcript_id "Ledus.S1G053100.t1"; gene_id "Ledus.S1G053100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6631.t1 is derived from g4074.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32799782	32801618	.	-	.	Ledus.S1G405200
Ledus.S1	AUGUSTUS	transcript	32799782	32801618	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	stop_codon	32799779	32799781	.	-	0	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32799782	32799925	1	-	0	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32799782	32799925	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	intron	32799926	32800015	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32800016	32800263	1	-	2	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32800016	32800263	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	intron	32800264	32800341	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32800342	32800720	1	-	0	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32800342	32800720	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	intron	32800721	32800814	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32800815	32800967	1	-	0	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32800815	32800967	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	intron	32800968	32801052	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32801053	32801177	1	-	2	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32801053	32801177	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	intron	32801178	32801257	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32801258	32801375	0.99	-	0	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32801258	32801375	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	intron	32801376	32801480	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32801481	32801618	0.75	-	0	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32801481	32801618	.	-	.	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	start_codon	32801616	32801618	.	-	0	transcript_id "Ledus.S1G405200.t1"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	transcript	32799782	32801618	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	stop_codon	32799779	32799781	.	-	0	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32799782	32799925	1	-	0	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32799782	32799925	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	intron	32799926	32800015	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32800016	32800263	1	-	2	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32800016	32800263	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	intron	32800264	32800341	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32800342	32800720	1	-	0	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32800342	32800720	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	intron	32800721	32800814	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32800815	32800967	1	-	0	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32800815	32800967	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	intron	32800968	32801052	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32801053	32801177	1	-	2	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32801053	32801177	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	intron	32801178	32801269	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32801270	32801375	1	-	0	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32801270	32801375	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	intron	32801376	32801480	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	CDS	32801481	32801618	0.65	-	0	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	exon	32801481	32801618	.	-	.	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
Ledus.S1	AUGUSTUS	start_codon	32801616	32801618	.	-	0	transcript_id "Ledus.S1G405200.t2"; gene_id "Ledus.S1G405200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4581.t1 is derived from g2018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17884981	17885835	.	-	.	Ledus.S1G200200
Ledus.S1	AUGUSTUS	transcript	17884981	17885835	.	-	.	transcript_id "Ledus.S1G200200.t1"; gene_id "Ledus.S1G200200"
Ledus.S1	AUGUSTUS	stop_codon	17884978	17884980	.	-	0	transcript_id "Ledus.S1G200200.t1"; gene_id "Ledus.S1G200200"
Ledus.S1	AUGUSTUS	CDS	17884981	17884996	0.75	-	1	transcript_id "Ledus.S1G200200.t1"; gene_id "Ledus.S1G200200"
Ledus.S1	AUGUSTUS	exon	17884981	17884996	.	-	.	transcript_id "Ledus.S1G200200.t1"; gene_id "Ledus.S1G200200"
Ledus.S1	AUGUSTUS	intron	17884997	17885118	.	-	.	transcript_id "Ledus.S1G200200.t1"; gene_id "Ledus.S1G200200"
Ledus.S1	AUGUSTUS	CDS	17885119	17885723	0.54	-	0	transcript_id "Ledus.S1G200200.t1"; gene_id "Ledus.S1G200200"
Ledus.S1	AUGUSTUS	exon	17885119	17885723	.	-	.	transcript_id "Ledus.S1G200200.t1"; gene_id "Ledus.S1G200200"
Ledus.S1	AUGUSTUS	intron	17885724	17885826	.	-	.	transcript_id "Ledus.S1G200200.t1"; gene_id "Ledus.S1G200200"
Ledus.S1	AUGUSTUS	CDS	17885827	17885835	0.99	-	0	transcript_id "Ledus.S1G200200.t1"; gene_id "Ledus.S1G200200"
Ledus.S1	AUGUSTUS	exon	17885827	17885835	.	-	.	transcript_id "Ledus.S1G200200.t1"; gene_id "Ledus.S1G200200"
Ledus.S1	AUGUSTUS	start_codon	17885833	17885835	.	-	0	transcript_id "Ledus.S1G200200.t1"; gene_id "Ledus.S1G200200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6777.t1 is derived from g4221.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34078802	34082929	.	-	.	Ledus.S1G419800
Ledus.S1	AUGUSTUS	transcript	34078802	34082929	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	stop_codon	34078799	34078801	.	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34078802	34078972	0.22	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34078802	34078972	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34078973	34079284	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34079285	34079316	0.69	-	2	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34079285	34079316	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34079317	34079421	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34079422	34079493	0.71	-	2	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34079422	34079493	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34079494	34079570	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34079571	34079664	1	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34079571	34079664	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34079665	34079738	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34079739	34079852	1	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34079739	34079852	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34079853	34079928	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34079929	34080093	1	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34079929	34080093	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34080094	34080211	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34080212	34080349	1	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34080212	34080349	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34080350	34080455	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34080456	34080532	1	-	2	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34080456	34080532	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34080533	34080707	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34080708	34080819	1	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34080708	34080819	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34080820	34080906	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34080907	34081006	1	-	1	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34080907	34081006	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34081007	34081166	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34081167	34081228	1	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34081167	34081228	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34081229	34081503	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34081504	34081641	1	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34081504	34081641	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34081642	34081769	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34081770	34081937	1	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34081770	34081937	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34081938	34082016	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34082017	34082073	1	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34082017	34082073	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34082074	34082258	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34082259	34082307	1	-	1	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34082259	34082307	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34082308	34082407	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34082408	34082556	1	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34082408	34082556	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34082557	34082642	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34082643	34082690	1	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34082643	34082690	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34082691	34082794	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34082795	34082929	0.93	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34082795	34082929	.	-	.	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	start_codon	34082927	34082929	.	-	0	transcript_id "Ledus.S1G419800.t1"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	transcript	34078802	34082929	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	stop_codon	34078799	34078801	.	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34078802	34078972	0.29	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34078802	34078972	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34078973	34079284	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34079285	34079316	0.67	-	2	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34079285	34079316	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34079317	34079421	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34079422	34079490	0.64	-	2	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34079422	34079490	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34079491	34079570	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34079571	34079664	1	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34079571	34079664	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34079665	34079738	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34079739	34079852	1	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34079739	34079852	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34079853	34079928	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34079929	34080093	0.99	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34079929	34080093	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34080094	34080211	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34080212	34080349	0.99	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34080212	34080349	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34080350	34080455	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34080456	34080532	1	-	2	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34080456	34080532	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34080533	34080707	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34080708	34080819	1	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34080708	34080819	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34080820	34080906	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34080907	34081006	1	-	1	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34080907	34081006	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34081007	34081166	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34081167	34081228	1	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34081167	34081228	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34081229	34081503	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34081504	34081641	1	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34081504	34081641	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34081642	34081769	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34081770	34081937	1	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34081770	34081937	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34081938	34082016	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34082017	34082073	1	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34082017	34082073	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34082074	34082258	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34082259	34082307	1	-	1	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34082259	34082307	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34082308	34082407	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34082408	34082556	1	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34082408	34082556	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34082557	34082642	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34082643	34082690	1	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34082643	34082690	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	intron	34082691	34082794	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	CDS	34082795	34082929	0.96	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	exon	34082795	34082929	.	-	.	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
Ledus.S1	AUGUSTUS	start_codon	34082927	34082929	.	-	0	transcript_id "Ledus.S1G419800.t2"; gene_id "Ledus.S1G419800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg571.t1 is derived from g7432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3403679	3407363	.	+	.	Ledus.S2G045300
Ledus.S2	AUGUSTUS	transcript	3403679	3407363	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	start_codon	3403679	3403681	.	+	0	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3403679	3403681	0.95	+	0	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3403679	3403681	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3403682	3403817	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3403818	3403956	0.99	+	0	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3403818	3403956	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3403957	3404035	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3404036	3404359	1	+	2	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3404036	3404359	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3404360	3404468	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3404469	3404687	1	+	2	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3404469	3404687	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3404688	3404789	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3404790	3404882	1	+	2	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3404790	3404882	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3404883	3404973	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3404974	3405173	1	+	2	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3404974	3405173	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3405174	3405261	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3405262	3405341	1	+	0	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3405262	3405341	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3405342	3405424	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3405425	3405538	1	+	1	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3405425	3405538	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3405539	3405622	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3405623	3405666	1	+	1	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3405623	3405666	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3405667	3405765	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3405766	3405821	1	+	2	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3405766	3405821	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3405822	3405910	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3405911	3405969	1	+	0	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3405911	3405969	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3405970	3406056	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3406057	3406206	1	+	1	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3406057	3406206	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3406207	3406295	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3406296	3406349	1	+	1	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3406296	3406349	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3406350	3406453	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3406454	3406544	1	+	1	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3406454	3406544	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3406545	3406664	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3406665	3406745	0.94	+	0	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3406665	3406745	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3406746	3406854	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3406855	3406935	1	+	0	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3406855	3406935	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3406936	3407093	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3407094	3407172	1	+	0	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3407094	3407172	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	intron	3407173	3407256	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	CDS	3407257	3407363	0.95	+	2	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	exon	3407257	3407363	.	+	.	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
Ledus.S2	AUGUSTUS	stop_codon	3407364	3407366	.	+	0	transcript_id "Ledus.S2G045300.t1"; gene_id "Ledus.S2G045300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4645.t1 is derived from g2083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18605023	18626217	.	+	.	Ledus.S1G206600
Ledus.S1	AUGUSTUS	transcript	18605023	18626217	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	start_codon	18605023	18605025	.	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18605023	18605888	0.54	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18605023	18605888	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18605889	18606090	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18606091	18608739	0.98	+	1	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18606091	18608739	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18608740	18608948	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18608949	18609162	1	+	1	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18608949	18609162	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18609163	18609265	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18609266	18609517	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18609266	18609517	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18609518	18609716	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18609717	18609776	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18609717	18609776	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18609777	18609885	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18609886	18610016	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18609886	18610016	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18610017	18610134	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18610135	18610249	1	+	1	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18610135	18610249	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18610250	18610336	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18610337	18610350	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18610337	18610350	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18610351	18610483	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18610484	18610489	1	+	1	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18610484	18610489	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18610490	18610568	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18610569	18610850	0.86	+	1	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18610569	18610850	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18610851	18611019	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18611020	18612847	0.61	+	1	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18611020	18612847	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18612848	18613067	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18613068	18613422	0.97	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18613068	18613422	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18613423	18613566	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18613567	18614253	0.96	+	2	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18613567	18614253	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18614254	18614582	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18614583	18615394	1	+	2	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18614583	18615394	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18615395	18615530	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18615531	18616295	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18615531	18616295	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18616296	18616455	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18616456	18616587	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18616456	18616587	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18616588	18616672	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18616673	18616777	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18616673	18616777	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18616778	18617026	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18617027	18617143	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18617027	18617143	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18617144	18617285	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18617286	18617362	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18617286	18617362	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18617363	18617449	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18617450	18617531	1	+	1	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18617450	18617531	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18617532	18617738	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18617739	18618104	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18617739	18618104	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18618105	18618317	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18618318	18618970	0.88	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18618318	18618970	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18618971	18619069	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18619070	18619154	1	+	1	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18619070	18619154	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18619155	18619505	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18619506	18619700	0.99	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18619506	18619700	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18619701	18619816	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18619817	18620359	0.99	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18619817	18620359	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18620360	18620505	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18620506	18620646	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18620506	18620646	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18620647	18620797	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18620798	18621301	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18620798	18621301	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18621302	18621464	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18621465	18621658	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18621465	18621658	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18621659	18621839	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18621840	18621909	0.96	+	1	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18621840	18621909	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18621910	18622020	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18622021	18622104	0.97	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18622021	18622104	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18622105	18622276	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18622277	18622333	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18622277	18622333	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18622334	18622490	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18622491	18622559	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18622491	18622559	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18622560	18622671	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18622672	18622758	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18622672	18622758	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18622759	18622897	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18622898	18623014	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18622898	18623014	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18623015	18623185	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18623186	18623335	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18623186	18623335	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18623336	18623481	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18623482	18623566	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18623482	18623566	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18623567	18623664	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18623665	18623785	1	+	2	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18623665	18623785	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18623786	18623884	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18623885	18623981	1	+	1	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18623885	18623981	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18623982	18624078	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18624079	18624192	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18624079	18624192	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18624193	18624323	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18624324	18624696	0.98	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18624324	18624696	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18624697	18624798	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18624799	18625697	0.96	+	2	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18624799	18625697	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18625698	18625879	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18625880	18626002	1	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18625880	18626002	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	intron	18626003	18626148	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	CDS	18626149	18626217	0.99	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	exon	18626149	18626217	.	+	.	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
Ledus.S1	AUGUSTUS	stop_codon	18626218	18626220	.	+	0	transcript_id "Ledus.S1G206600.t1"; gene_id "Ledus.S1G206600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12094.t1 is derived from g5713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9481709	9482569	.	-	.	Ledus.S4G125000
Ledus.S4	AUGUSTUS	transcript	9481709	9482569	.	-	.	transcript_id "Ledus.S4G125000.t1"; gene_id "Ledus.S4G125000"
Ledus.S4	AUGUSTUS	stop_codon	9481706	9481708	.	-	0	transcript_id "Ledus.S4G125000.t1"; gene_id "Ledus.S4G125000"
Ledus.S4	AUGUSTUS	CDS	9481709	9482200	0.99	-	0	transcript_id "Ledus.S4G125000.t1"; gene_id "Ledus.S4G125000"
Ledus.S4	AUGUSTUS	exon	9481709	9482200	.	-	.	transcript_id "Ledus.S4G125000.t1"; gene_id "Ledus.S4G125000"
Ledus.S4	AUGUSTUS	intron	9482201	9482359	.	-	.	transcript_id "Ledus.S4G125000.t1"; gene_id "Ledus.S4G125000"
Ledus.S4	AUGUSTUS	CDS	9482360	9482569	0.98	-	0	transcript_id "Ledus.S4G125000.t1"; gene_id "Ledus.S4G125000"
Ledus.S4	AUGUSTUS	exon	9482360	9482569	.	-	.	transcript_id "Ledus.S4G125000.t1"; gene_id "Ledus.S4G125000"
Ledus.S4	AUGUSTUS	start_codon	9482567	9482569	.	-	0	transcript_id "Ledus.S4G125000.t1"; gene_id "Ledus.S4G125000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3412.t1 is derived from g847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8130855	8132109	.	-	.	Ledus.S1G083300
Ledus.S1	AUGUSTUS	transcript	8130855	8132109	.	-	.	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	stop_codon	8130852	8130854	.	-	0	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	CDS	8130855	8130978	0.58	-	1	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	exon	8130855	8130978	.	-	.	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	intron	8130979	8131331	.	-	.	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	CDS	8131332	8131466	0.7	-	1	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	exon	8131332	8131466	.	-	.	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	intron	8131467	8131634	.	-	.	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	CDS	8131635	8131801	1	-	0	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	exon	8131635	8131801	.	-	.	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	intron	8131802	8132007	.	-	.	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	CDS	8132008	8132109	1	-	0	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	exon	8132008	8132109	.	-	.	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
Ledus.S1	AUGUSTUS	start_codon	8132107	8132109	.	-	0	transcript_id "Ledus.S1G083300.t1"; gene_id "Ledus.S1G083300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5037.t1 is derived from g2476.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21242028	21244340	.	+	.	Ledus.S1G245800
Ledus.S1	AUGUSTUS	transcript	21242028	21244340	.	+	.	transcript_id "Ledus.S1G245800.t1"; gene_id "Ledus.S1G245800"
Ledus.S1	AUGUSTUS	start_codon	21242028	21242030	.	+	0	transcript_id "Ledus.S1G245800.t1"; gene_id "Ledus.S1G245800"
Ledus.S1	AUGUSTUS	CDS	21242028	21244340	0.94	+	0	transcript_id "Ledus.S1G245800.t1"; gene_id "Ledus.S1G245800"
Ledus.S1	AUGUSTUS	exon	21242028	21244340	.	+	.	transcript_id "Ledus.S1G245800.t1"; gene_id "Ledus.S1G245800"
Ledus.S1	AUGUSTUS	stop_codon	21244341	21244343	.	+	0	transcript_id "Ledus.S1G245800.t1"; gene_id "Ledus.S1G245800"
# This transcript jg6210.t2 is derived from g3653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6210.t3 is derived from g3653.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6211.t1 is derived from g3654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29673062	29676784	.	-	.	Ledus.S1G363200
Ledus.S1	AUGUSTUS	transcript	29673062	29676784	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	stop_codon	29673059	29673061	.	-	0	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	CDS	29673062	29673151	1	-	0	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	exon	29673062	29673151	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	intron	29673152	29673229	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	CDS	29673230	29673274	0.98	-	0	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	exon	29673230	29673274	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	intron	29673275	29673393	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	CDS	29673394	29673498	0.95	-	0	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	exon	29673394	29673498	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	intron	29673499	29673717	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	CDS	29673718	29674805	0.8	-	2	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	exon	29673718	29674805	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	intron	29674806	29675408	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	CDS	29675409	29675415	0.58	-	0	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	exon	29675409	29675415	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	intron	29675416	29676046	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	CDS	29676047	29676397	0.25	-	0	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	exon	29676047	29676397	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	intron	29676398	29676490	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	CDS	29676491	29676531	0.98	-	2	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	exon	29676491	29676531	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	intron	29676532	29676654	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	CDS	29676655	29676784	0.64	-	0	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	exon	29676655	29676784	.	-	.	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
Ledus.S1	AUGUSTUS	start_codon	29676782	29676784	.	-	0	transcript_id "Ledus.S1G363200.t1"; gene_id "Ledus.S1G363200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5092.t1 is derived from g2531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21539404	21541417	.	-	.	Ledus.S1G251300
Ledus.S1	AUGUSTUS	transcript	21539404	21541417	.	-	.	transcript_id "Ledus.S1G251300.t1"; gene_id "Ledus.S1G251300"
Ledus.S1	AUGUSTUS	stop_codon	21539401	21539403	.	-	0	transcript_id "Ledus.S1G251300.t1"; gene_id "Ledus.S1G251300"
Ledus.S1	AUGUSTUS	CDS	21539404	21539744	1	-	2	transcript_id "Ledus.S1G251300.t1"; gene_id "Ledus.S1G251300"
Ledus.S1	AUGUSTUS	exon	21539404	21539744	.	-	.	transcript_id "Ledus.S1G251300.t1"; gene_id "Ledus.S1G251300"
Ledus.S1	AUGUSTUS	intron	21539745	21539838	.	-	.	transcript_id "Ledus.S1G251300.t1"; gene_id "Ledus.S1G251300"
Ledus.S1	AUGUSTUS	CDS	21539839	21541417	0.92	-	0	transcript_id "Ledus.S1G251300.t1"; gene_id "Ledus.S1G251300"
Ledus.S1	AUGUSTUS	exon	21539839	21541417	.	-	.	transcript_id "Ledus.S1G251300.t1"; gene_id "Ledus.S1G251300"
Ledus.S1	AUGUSTUS	start_codon	21541415	21541417	.	-	0	transcript_id "Ledus.S1G251300.t1"; gene_id "Ledus.S1G251300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10393.t1 is derived from g11423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14784782	14786657	.	+	.	Ledus.S3G187000
Ledus.S3	AUGUSTUS	transcript	14784782	14786657	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	start_codon	14784782	14784784	.	+	0	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	CDS	14784782	14784947	1	+	0	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	exon	14784782	14784947	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	intron	14784948	14785043	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	CDS	14785044	14785245	1	+	2	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	exon	14785044	14785245	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	intron	14785246	14785369	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	CDS	14785370	14785513	1	+	1	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	exon	14785370	14785513	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	intron	14785514	14785607	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	CDS	14785608	14785691	1	+	1	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	exon	14785608	14785691	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	intron	14785692	14785806	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	CDS	14785807	14785881	1	+	1	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	exon	14785807	14785881	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	intron	14785882	14786019	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	CDS	14786020	14786256	0.38	+	1	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	exon	14786020	14786256	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	intron	14786257	14786419	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	CDS	14786420	14786497	0.94	+	1	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	exon	14786420	14786497	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	intron	14786498	14786593	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	CDS	14786594	14786657	0.94	+	1	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	exon	14786594	14786657	.	+	.	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
Ledus.S3	AUGUSTUS	stop_codon	14786658	14786660	.	+	0	transcript_id "Ledus.S3G187000.t1"; gene_id "Ledus.S3G187000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11867.t1 is derived from g5486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7441283	7443982	.	-	.	Ledus.S4G102300
Ledus.S4	AUGUSTUS	transcript	7441283	7443982	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	stop_codon	7441280	7441282	.	-	0	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	CDS	7441283	7441477	1	-	0	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	exon	7441283	7441477	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	intron	7441478	7441638	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	CDS	7441639	7441734	1	-	0	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	exon	7441639	7441734	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	intron	7441735	7441845	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	CDS	7441846	7442004	1	-	0	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	exon	7441846	7442004	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	intron	7442005	7442189	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	CDS	7442190	7442267	1	-	0	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	exon	7442190	7442267	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	intron	7442268	7442482	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	CDS	7442483	7442557	0.99	-	0	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	exon	7442483	7442557	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	intron	7442558	7442677	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	CDS	7442678	7442756	0.99	-	1	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	exon	7442678	7442756	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	intron	7442757	7442898	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	CDS	7442899	7443131	1	-	0	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	exon	7442899	7443131	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	intron	7443132	7443302	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	CDS	7443303	7443401	0.84	-	0	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	exon	7443303	7443401	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	intron	7443402	7443517	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	CDS	7443518	7443569	0.7	-	1	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	exon	7443518	7443569	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	intron	7443570	7443728	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	CDS	7443729	7443982	0.56	-	0	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	exon	7443729	7443982	.	-	.	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
Ledus.S4	AUGUSTUS	start_codon	7443980	7443982	.	-	0	transcript_id "Ledus.S4G102300.t1"; gene_id "Ledus.S4G102300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1466.t1 is derived from g8327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10344054	10345250	.	-	.	Ledus.S2G134800
Ledus.S2	AUGUSTUS	transcript	10344054	10345250	.	-	.	transcript_id "Ledus.S2G134800.t1"; gene_id "Ledus.S2G134800"
Ledus.S2	AUGUSTUS	stop_codon	10344051	10344053	.	-	0	transcript_id "Ledus.S2G134800.t1"; gene_id "Ledus.S2G134800"
Ledus.S2	AUGUSTUS	CDS	10344054	10345250	1	-	0	transcript_id "Ledus.S2G134800.t1"; gene_id "Ledus.S2G134800"
Ledus.S2	AUGUSTUS	exon	10344054	10345250	.	-	.	transcript_id "Ledus.S2G134800.t1"; gene_id "Ledus.S2G134800"
Ledus.S2	AUGUSTUS	start_codon	10345248	10345250	.	-	0	transcript_id "Ledus.S2G134800.t1"; gene_id "Ledus.S2G134800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg287.t1 is derived from g7148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1405538	1406753	.	-	.	Ledus.S2G016900
Ledus.S2	AUGUSTUS	transcript	1405538	1406753	.	-	.	transcript_id "Ledus.S2G016900.t1"; gene_id "Ledus.S2G016900"
Ledus.S2	AUGUSTUS	stop_codon	1405535	1405537	.	-	0	transcript_id "Ledus.S2G016900.t1"; gene_id "Ledus.S2G016900"
Ledus.S2	AUGUSTUS	CDS	1405538	1405732	0.87	-	0	transcript_id "Ledus.S2G016900.t1"; gene_id "Ledus.S2G016900"
Ledus.S2	AUGUSTUS	exon	1405538	1405732	.	-	.	transcript_id "Ledus.S2G016900.t1"; gene_id "Ledus.S2G016900"
Ledus.S2	AUGUSTUS	intron	1405733	1405822	.	-	.	transcript_id "Ledus.S2G016900.t1"; gene_id "Ledus.S2G016900"
Ledus.S2	AUGUSTUS	CDS	1405823	1405986	1	-	2	transcript_id "Ledus.S2G016900.t1"; gene_id "Ledus.S2G016900"
Ledus.S2	AUGUSTUS	exon	1405823	1405986	.	-	.	transcript_id "Ledus.S2G016900.t1"; gene_id "Ledus.S2G016900"
Ledus.S2	AUGUSTUS	intron	1405987	1406065	.	-	.	transcript_id "Ledus.S2G016900.t1"; gene_id "Ledus.S2G016900"
Ledus.S2	AUGUSTUS	CDS	1406066	1406753	0.67	-	0	transcript_id "Ledus.S2G016900.t1"; gene_id "Ledus.S2G016900"
Ledus.S2	AUGUSTUS	exon	1406066	1406753	.	-	.	transcript_id "Ledus.S2G016900.t1"; gene_id "Ledus.S2G016900"
Ledus.S2	AUGUSTUS	start_codon	1406751	1406753	.	-	0	transcript_id "Ledus.S2G016900.t1"; gene_id "Ledus.S2G016900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7701.t1 is derived from g12372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5282859	5285208	.	+	.	Ledus.S5G047900
Ledus.S5	AUGUSTUS	transcript	5282859	5285208	.	+	.	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	start_codon	5282859	5282861	.	+	0	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	CDS	5282859	5283205	0.48	+	0	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	exon	5282859	5283205	.	+	.	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	intron	5283206	5283340	.	+	.	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	CDS	5283341	5284242	0.81	+	1	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	exon	5283341	5284242	.	+	.	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	intron	5284243	5284541	.	+	.	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	CDS	5284542	5284753	0.59	+	2	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	exon	5284542	5284753	.	+	.	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	intron	5284754	5284921	.	+	.	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	CDS	5284922	5285020	0.68	+	0	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	exon	5284922	5285020	.	+	.	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	intron	5285021	5285109	.	+	.	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	CDS	5285110	5285208	0.97	+	0	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	exon	5285110	5285208	.	+	.	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
Ledus.S5	AUGUSTUS	stop_codon	5285209	5285211	.	+	0	transcript_id "Ledus.S5G047900.t1"; gene_id "Ledus.S5G047900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4437.t1 is derived from g1873.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17118954	17122359	.	+	.	Ledus.S1G185800
Ledus.S1	AUGUSTUS	transcript	17118954	17122359	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	start_codon	17118954	17118956	.	+	0	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	CDS	17118954	17118974	0.96	+	0	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	exon	17118954	17118974	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	intron	17118975	17119240	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	CDS	17119241	17119301	1	+	0	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	exon	17119241	17119301	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	intron	17119302	17119373	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	CDS	17119374	17119569	1	+	2	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	exon	17119374	17119569	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	intron	17119570	17119652	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	CDS	17119653	17119800	1	+	1	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	exon	17119653	17119800	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	intron	17119801	17119865	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	CDS	17119866	17119961	1	+	0	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	exon	17119866	17119961	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	intron	17119962	17120035	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	CDS	17120036	17120196	1	+	0	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	exon	17120036	17120196	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	intron	17120197	17120285	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	CDS	17120286	17120463	1	+	1	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	exon	17120286	17120463	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	intron	17120464	17120532	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	CDS	17120533	17120669	1	+	0	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	exon	17120533	17120669	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	intron	17120670	17120762	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	CDS	17120763	17121435	1	+	1	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	exon	17120763	17121435	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	intron	17121436	17121499	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	CDS	17121500	17121612	1	+	0	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	exon	17121500	17121612	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	intron	17121613	17121692	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	CDS	17121693	17121948	0.93	+	1	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	exon	17121693	17121948	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	intron	17121949	17122050	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	CDS	17122051	17122359	0.9	+	0	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	exon	17122051	17122359	.	+	.	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
Ledus.S1	AUGUSTUS	stop_codon	17122360	17122362	.	+	0	transcript_id "Ledus.S1G185800.t1"; gene_id "Ledus.S1G185800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1618.t1 is derived from g8479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11451383	11451883	.	+	.	Ledus.S2G150000
Ledus.S2	AUGUSTUS	transcript	11451383	11451883	.	+	.	transcript_id "Ledus.S2G150000.t1"; gene_id "Ledus.S2G150000"
Ledus.S2	AUGUSTUS	start_codon	11451383	11451385	.	+	0	transcript_id "Ledus.S2G150000.t1"; gene_id "Ledus.S2G150000"
Ledus.S2	AUGUSTUS	CDS	11451383	11451883	1	+	0	transcript_id "Ledus.S2G150000.t1"; gene_id "Ledus.S2G150000"
Ledus.S2	AUGUSTUS	exon	11451383	11451883	.	+	.	transcript_id "Ledus.S2G150000.t1"; gene_id "Ledus.S2G150000"
Ledus.S2	AUGUSTUS	stop_codon	11451884	11451886	.	+	0	transcript_id "Ledus.S2G150000.t1"; gene_id "Ledus.S2G150000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1282.t1 is derived from g8143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9042051	9042791	.	+	.	Ledus.S2G116400
Ledus.S2	AUGUSTUS	transcript	9042051	9042791	.	+	.	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	start_codon	9042051	9042053	.	+	0	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	CDS	9042051	9042190	0.76	+	0	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	exon	9042051	9042190	.	+	.	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	intron	9042191	9042258	.	+	.	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	CDS	9042259	9042507	1	+	1	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	exon	9042259	9042507	.	+	.	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	intron	9042508	9042585	.	+	.	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	CDS	9042586	9042643	0.96	+	1	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	exon	9042586	9042643	.	+	.	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	intron	9042644	9042740	.	+	.	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	CDS	9042741	9042791	1	+	0	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	exon	9042741	9042791	.	+	.	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
Ledus.S2	AUGUSTUS	stop_codon	9042792	9042794	.	+	0	transcript_id "Ledus.S2G116400.t1"; gene_id "Ledus.S2G116400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10309.t1 is derived from g11339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14180697	14180933	.	+	.	Ledus.S3G178600
Ledus.S3	AUGUSTUS	transcript	14180697	14180933	.	+	.	transcript_id "Ledus.S3G178600.t1"; gene_id "Ledus.S3G178600"
Ledus.S3	AUGUSTUS	start_codon	14180697	14180699	.	+	0	transcript_id "Ledus.S3G178600.t1"; gene_id "Ledus.S3G178600"
Ledus.S3	AUGUSTUS	CDS	14180697	14180933	1	+	0	transcript_id "Ledus.S3G178600.t1"; gene_id "Ledus.S3G178600"
Ledus.S3	AUGUSTUS	exon	14180697	14180933	.	+	.	transcript_id "Ledus.S3G178600.t1"; gene_id "Ledus.S3G178600"
Ledus.S3	AUGUSTUS	stop_codon	14180934	14180936	.	+	0	transcript_id "Ledus.S3G178600.t1"; gene_id "Ledus.S3G178600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3014.t1 is derived from g449.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5338115	5341587	.	+	.	Ledus.S1G043500
Ledus.S1	AUGUSTUS	transcript	5338115	5341587	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	start_codon	5338115	5338117	.	+	0	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	CDS	5338115	5338463	0.85	+	0	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	exon	5338115	5338463	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	intron	5338464	5338597	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	CDS	5338598	5339406	1	+	2	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	exon	5338598	5339406	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	intron	5339407	5339553	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	CDS	5339554	5339714	1	+	0	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	exon	5339554	5339714	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	intron	5339715	5339824	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	CDS	5339825	5340083	0.98	+	1	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	exon	5339825	5340083	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	intron	5340084	5340173	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	CDS	5340174	5340430	1	+	0	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	exon	5340174	5340430	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	intron	5340431	5341035	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	CDS	5341036	5341091	1	+	1	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	exon	5341036	5341091	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	intron	5341092	5341177	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	CDS	5341178	5341587	1	+	2	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	exon	5341178	5341587	.	+	.	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
Ledus.S1	AUGUSTUS	stop_codon	5341588	5341590	.	+	0	transcript_id "Ledus.S1G043500.t1"; gene_id "Ledus.S1G043500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4794.t1 is derived from g2232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19800878	19801225	.	+	.	Ledus.S1G221500
Ledus.S1	AUGUSTUS	transcript	19800878	19801225	.	+	.	transcript_id "Ledus.S1G221500.t1"; gene_id "Ledus.S1G221500"
Ledus.S1	AUGUSTUS	start_codon	19800878	19800880	.	+	0	transcript_id "Ledus.S1G221500.t1"; gene_id "Ledus.S1G221500"
Ledus.S1	AUGUSTUS	CDS	19800878	19801225	0.16	+	0	transcript_id "Ledus.S1G221500.t1"; gene_id "Ledus.S1G221500"
Ledus.S1	AUGUSTUS	exon	19800878	19801225	.	+	.	transcript_id "Ledus.S1G221500.t1"; gene_id "Ledus.S1G221500"
Ledus.S1	AUGUSTUS	stop_codon	19801226	19801228	.	+	0	transcript_id "Ledus.S1G221500.t1"; gene_id "Ledus.S1G221500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3478.t1 is derived from g913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8650109	8653693	.	+	.	Ledus.S1G089900
Ledus.S1	AUGUSTUS	transcript	8650109	8653693	.	+	.	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	start_codon	8650109	8650111	.	+	0	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	CDS	8650109	8650187	0.39	+	0	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	exon	8650109	8650187	.	+	.	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	intron	8650188	8650394	.	+	.	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	CDS	8650395	8650471	0.6	+	2	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	exon	8650395	8650471	.	+	.	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	intron	8650472	8650578	.	+	.	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	CDS	8650579	8652512	0.84	+	0	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	exon	8650579	8652512	.	+	.	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	intron	8652513	8652650	.	+	.	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	CDS	8652651	8652779	0.98	+	1	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	exon	8652651	8652779	.	+	.	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	intron	8652780	8652941	.	+	.	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	CDS	8652942	8652967	1	+	1	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	exon	8652942	8652967	.	+	.	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	intron	8652968	8653109	.	+	.	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	CDS	8653110	8653693	1	+	2	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	exon	8653110	8653693	.	+	.	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
Ledus.S1	AUGUSTUS	stop_codon	8653694	8653696	.	+	0	transcript_id "Ledus.S1G089900.t1"; gene_id "Ledus.S1G089900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5724.t1 is derived from g3163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26228924	26230005	.	+	.	Ledus.S1G314500
Ledus.S1	AUGUSTUS	transcript	26228924	26230005	.	+	.	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	start_codon	26228924	26228926	.	+	0	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	CDS	26228924	26229070	0.61	+	0	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	exon	26228924	26229070	.	+	.	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	intron	26229071	26229153	.	+	.	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	CDS	26229154	26229337	1	+	0	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	exon	26229154	26229337	.	+	.	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	intron	26229338	26229414	.	+	.	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	CDS	26229415	26229548	1	+	2	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	exon	26229415	26229548	.	+	.	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	intron	26229549	26229641	.	+	.	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	CDS	26229642	26229824	1	+	0	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	exon	26229642	26229824	.	+	.	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	intron	26229825	26229909	.	+	.	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	CDS	26229910	26230005	1	+	0	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	exon	26229910	26230005	.	+	.	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
Ledus.S1	AUGUSTUS	stop_codon	26230006	26230008	.	+	0	transcript_id "Ledus.S1G314500.t1"; gene_id "Ledus.S1G314500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8418.t1 is derived from g13090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11548601	11551604	.	-	.	Ledus.S5G119600
Ledus.S5	AUGUSTUS	transcript	11548601	11551604	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	stop_codon	11548598	11548600	.	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11548601	11548714	1	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11548601	11548714	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11548715	11548801	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11548802	11548969	1	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11548802	11548969	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11548970	11549057	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11549058	11549210	1	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11549058	11549210	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11549211	11549293	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11549294	11549438	1	-	1	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11549294	11549438	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11549439	11549529	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11549530	11549597	1	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11549530	11549597	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11549598	11549685	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11549686	11549775	1	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11549686	11549775	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11549776	11549865	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11549866	11549949	1	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11549866	11549949	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11549950	11550089	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11550090	11550162	1	-	1	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11550090	11550162	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11550163	11550265	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11550266	11550399	1	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11550266	11550399	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11550400	11550522	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11550523	11550632	1	-	2	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11550523	11550632	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11550633	11550725	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11550726	11550768	1	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11550726	11550768	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11550769	11550866	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11550867	11550959	1	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11550867	11550959	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11550960	11551042	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11551043	11551162	1	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11551043	11551162	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11551163	11551242	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11551243	11551352	1	-	2	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11551243	11551352	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	intron	11551353	11551432	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	CDS	11551433	11551604	1	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	exon	11551433	11551604	.	-	.	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
Ledus.S5	AUGUSTUS	start_codon	11551602	11551604	.	-	0	transcript_id "Ledus.S5G119600.t1"; gene_id "Ledus.S5G119600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4014.t1 is derived from g1450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14086144	14086964	.	+	.	Ledus.S1G143500
Ledus.S1	AUGUSTUS	transcript	14086144	14086964	.	+	.	transcript_id "Ledus.S1G143500.t1"; gene_id "Ledus.S1G143500"
Ledus.S1	AUGUSTUS	start_codon	14086144	14086146	.	+	0	transcript_id "Ledus.S1G143500.t1"; gene_id "Ledus.S1G143500"
Ledus.S1	AUGUSTUS	CDS	14086144	14086227	0.92	+	0	transcript_id "Ledus.S1G143500.t1"; gene_id "Ledus.S1G143500"
Ledus.S1	AUGUSTUS	exon	14086144	14086227	.	+	.	transcript_id "Ledus.S1G143500.t1"; gene_id "Ledus.S1G143500"
Ledus.S1	AUGUSTUS	intron	14086228	14086346	.	+	.	transcript_id "Ledus.S1G143500.t1"; gene_id "Ledus.S1G143500"
Ledus.S1	AUGUSTUS	CDS	14086347	14086964	1	+	0	transcript_id "Ledus.S1G143500.t1"; gene_id "Ledus.S1G143500"
Ledus.S1	AUGUSTUS	exon	14086347	14086964	.	+	.	transcript_id "Ledus.S1G143500.t1"; gene_id "Ledus.S1G143500"
Ledus.S1	AUGUSTUS	stop_codon	14086965	14086967	.	+	0	transcript_id "Ledus.S1G143500.t1"; gene_id "Ledus.S1G143500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2179.t1 is derived from g9042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15775632	15779100	.	-	.	Ledus.S2G206100
Ledus.S2	AUGUSTUS	transcript	15775632	15779100	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	stop_codon	15775629	15775631	.	-	0	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	CDS	15775632	15775738	0.82	-	2	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	exon	15775632	15775738	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	intron	15775739	15775906	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	CDS	15775907	15776025	0.36	-	1	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	exon	15775907	15776025	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	intron	15776026	15776129	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	CDS	15776130	15776203	0.33	-	0	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	exon	15776130	15776203	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	intron	15776204	15776368	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	CDS	15776369	15777129	0.77	-	2	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	exon	15776369	15777129	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	intron	15777130	15777448	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	CDS	15777449	15777618	0.53	-	1	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	exon	15777449	15777618	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	intron	15777619	15777864	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	CDS	15777865	15777935	0.42	-	0	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	exon	15777865	15777935	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	intron	15777936	15778113	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	CDS	15778114	15778889	0.59	-	2	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	exon	15778114	15778889	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	intron	15778890	15779072	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	CDS	15779073	15779100	0.64	-	0	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	exon	15779073	15779100	.	-	.	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
Ledus.S2	AUGUSTUS	start_codon	15779098	15779100	.	-	0	transcript_id "Ledus.S2G206100.t1"; gene_id "Ledus.S2G206100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5042.t1 is derived from g2481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21260383	21263034	.	-	.	Ledus.S1G246300
Ledus.S1	AUGUSTUS	transcript	21260383	21263034	.	-	.	transcript_id "Ledus.S1G246300.t1"; gene_id "Ledus.S1G246300"
Ledus.S1	AUGUSTUS	stop_codon	21260380	21260382	.	-	0	transcript_id "Ledus.S1G246300.t1"; gene_id "Ledus.S1G246300"
Ledus.S1	AUGUSTUS	CDS	21260383	21260775	1	-	0	transcript_id "Ledus.S1G246300.t1"; gene_id "Ledus.S1G246300"
Ledus.S1	AUGUSTUS	exon	21260383	21260775	.	-	.	transcript_id "Ledus.S1G246300.t1"; gene_id "Ledus.S1G246300"
Ledus.S1	AUGUSTUS	intron	21260776	21260874	.	-	.	transcript_id "Ledus.S1G246300.t1"; gene_id "Ledus.S1G246300"
Ledus.S1	AUGUSTUS	CDS	21260875	21261672	1	-	0	transcript_id "Ledus.S1G246300.t1"; gene_id "Ledus.S1G246300"
Ledus.S1	AUGUSTUS	exon	21260875	21261672	.	-	.	transcript_id "Ledus.S1G246300.t1"; gene_id "Ledus.S1G246300"
Ledus.S1	AUGUSTUS	intron	21261673	21261816	.	-	.	transcript_id "Ledus.S1G246300.t1"; gene_id "Ledus.S1G246300"
Ledus.S1	AUGUSTUS	CDS	21261817	21263034	1	-	0	transcript_id "Ledus.S1G246300.t1"; gene_id "Ledus.S1G246300"
Ledus.S1	AUGUSTUS	exon	21261817	21263034	.	-	.	transcript_id "Ledus.S1G246300.t1"; gene_id "Ledus.S1G246300"
Ledus.S1	AUGUSTUS	start_codon	21263032	21263034	.	-	0	transcript_id "Ledus.S1G246300.t1"; gene_id "Ledus.S1G246300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4368.t1 is derived from g1804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16665565	16670323	.	+	.	Ledus.S1G178900
Ledus.S1	AUGUSTUS	transcript	16665565	16670323	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	start_codon	16665565	16665567	.	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16665565	16665771	1	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16665565	16665771	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16665772	16665869	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16665870	16666009	0.99	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16665870	16666009	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16666010	16666120	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16666121	16666283	1	+	1	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16666121	16666283	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16666284	16666418	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16666419	16666517	1	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16666419	16666517	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16666518	16666708	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16666709	16666786	1	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16666709	16666786	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16666787	16666899	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16666900	16666977	1	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16666900	16666977	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16666978	16667116	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16667117	16667287	1	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16667117	16667287	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16667288	16667387	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16667388	16667488	1	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16667388	16667488	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16667489	16667700	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16667701	16667777	1	+	1	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16667701	16667777	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16667778	16667876	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16667877	16667950	1	+	2	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16667877	16667950	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16667951	16668042	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16668043	16668109	1	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16668043	16668109	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16668110	16668260	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16668261	16668373	0.96	+	2	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16668261	16668373	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16668374	16668480	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16668481	16668753	0.95	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16668481	16668753	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16668754	16668911	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16668912	16669028	1	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16668912	16669028	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16669029	16669209	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16669210	16669281	1	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16669210	16669281	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16669282	16669388	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16669389	16669439	0.99	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16669389	16669439	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16669440	16669528	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16669529	16669762	1	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16669529	16669762	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16669763	16669917	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16669918	16670094	1	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16669918	16670094	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	intron	16670095	16670197	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	CDS	16670198	16670323	0.96	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	exon	16670198	16670323	.	+	.	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
Ledus.S1	AUGUSTUS	stop_codon	16670324	16670326	.	+	0	transcript_id "Ledus.S1G178900.t1"; gene_id "Ledus.S1G178900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg131.t1 is derived from g6992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	135580	136617	.	-	.	Ledus.S2G001300
Ledus.S2	AUGUSTUS	transcript	135580	136617	.	-	.	transcript_id "Ledus.S2G001300.t1"; gene_id "Ledus.S2G001300"
Ledus.S2	AUGUSTUS	stop_codon	135577	135579	.	-	0	transcript_id "Ledus.S2G001300.t1"; gene_id "Ledus.S2G001300"
Ledus.S2	AUGUSTUS	CDS	135580	136617	1	-	0	transcript_id "Ledus.S2G001300.t1"; gene_id "Ledus.S2G001300"
Ledus.S2	AUGUSTUS	exon	135580	136617	.	-	.	transcript_id "Ledus.S2G001300.t1"; gene_id "Ledus.S2G001300"
Ledus.S2	AUGUSTUS	start_codon	136615	136617	.	-	0	transcript_id "Ledus.S2G001300.t1"; gene_id "Ledus.S2G001300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4876.t1 is derived from g2314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20493749	20495757	.	+	.	Ledus.S1G229700
Ledus.S1	AUGUSTUS	transcript	20493749	20495757	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	start_codon	20493749	20493751	.	+	0	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	CDS	20493749	20494014	0.64	+	0	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	exon	20493749	20494014	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	intron	20494015	20494097	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	CDS	20494098	20494479	0.99	+	1	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	exon	20494098	20494479	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	intron	20494480	20494597	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	CDS	20494598	20494684	1	+	0	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	exon	20494598	20494684	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	intron	20494685	20494780	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	CDS	20494781	20494902	1	+	0	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	exon	20494781	20494902	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	intron	20494903	20495028	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	CDS	20495029	20495119	1	+	1	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	exon	20495029	20495119	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	intron	20495120	20495216	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	CDS	20495217	20495632	0.94	+	0	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	exon	20495217	20495632	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	intron	20495633	20495711	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	CDS	20495712	20495757	0.97	+	1	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	exon	20495712	20495757	.	+	.	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
Ledus.S1	AUGUSTUS	stop_codon	20495758	20495760	.	+	0	transcript_id "Ledus.S1G229700.t1"; gene_id "Ledus.S1G229700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1476.t1 is derived from g8337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10398577	10401265	.	-	.	Ledus.S2G135800
Ledus.S2	AUGUSTUS	transcript	10398577	10401265	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	stop_codon	10398574	10398576	.	-	0	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	CDS	10398577	10398765	1	-	0	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	exon	10398577	10398765	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	intron	10398766	10398896	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	CDS	10398897	10398950	1	-	0	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	exon	10398897	10398950	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	intron	10398951	10399076	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	CDS	10399077	10399145	1	-	0	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	exon	10399077	10399145	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	intron	10399146	10399354	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	CDS	10399355	10399476	1	-	2	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	exon	10399355	10399476	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	intron	10399477	10399559	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	CDS	10399560	10399819	1	-	1	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	exon	10399560	10399819	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	intron	10399820	10399975	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	CDS	10399976	10400088	1	-	0	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	exon	10399976	10400088	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	intron	10400089	10400350	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	CDS	10400351	10401265	0.93	-	0	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	exon	10400351	10401265	.	-	.	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
Ledus.S2	AUGUSTUS	start_codon	10401263	10401265	.	-	0	transcript_id "Ledus.S2G135800.t1"; gene_id "Ledus.S2G135800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1944.t1 is derived from g8807.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13625529	13625895	.	-	.	Ledus.S2G182600
Ledus.S2	AUGUSTUS	transcript	13625529	13625895	.	-	.	transcript_id "Ledus.S2G182600.t1"; gene_id "Ledus.S2G182600"
Ledus.S2	AUGUSTUS	stop_codon	13625526	13625528	.	-	0	transcript_id "Ledus.S2G182600.t1"; gene_id "Ledus.S2G182600"
Ledus.S2	AUGUSTUS	CDS	13625529	13625595	0.47	-	1	transcript_id "Ledus.S2G182600.t1"; gene_id "Ledus.S2G182600"
Ledus.S2	AUGUSTUS	exon	13625529	13625595	.	-	.	transcript_id "Ledus.S2G182600.t1"; gene_id "Ledus.S2G182600"
Ledus.S2	AUGUSTUS	intron	13625596	13625674	.	-	.	transcript_id "Ledus.S2G182600.t1"; gene_id "Ledus.S2G182600"
Ledus.S2	AUGUSTUS	CDS	13625675	13625895	0.33	-	0	transcript_id "Ledus.S2G182600.t1"; gene_id "Ledus.S2G182600"
Ledus.S2	AUGUSTUS	exon	13625675	13625895	.	-	.	transcript_id "Ledus.S2G182600.t1"; gene_id "Ledus.S2G182600"
Ledus.S2	AUGUSTUS	start_codon	13625893	13625895	.	-	0	transcript_id "Ledus.S2G182600.t1"; gene_id "Ledus.S2G182600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7776.t1 is derived from g12447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6485257	6485733	.	-	.	Ledus.S5G055400
Ledus.S5	AUGUSTUS	transcript	6485257	6485733	.	-	.	transcript_id "Ledus.S5G055400.t1"; gene_id "Ledus.S5G055400"
Ledus.S5	AUGUSTUS	stop_codon	6485254	6485256	.	-	0	transcript_id "Ledus.S5G055400.t1"; gene_id "Ledus.S5G055400"
Ledus.S5	AUGUSTUS	CDS	6485257	6485733	0.96	-	0	transcript_id "Ledus.S5G055400.t1"; gene_id "Ledus.S5G055400"
Ledus.S5	AUGUSTUS	exon	6485257	6485733	.	-	.	transcript_id "Ledus.S5G055400.t1"; gene_id "Ledus.S5G055400"
Ledus.S5	AUGUSTUS	start_codon	6485731	6485733	.	-	0	transcript_id "Ledus.S5G055400.t1"; gene_id "Ledus.S5G055400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8347.t1 is derived from g13019.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10935136	10937655	.	-	.	Ledus.S5G112500
Ledus.S5	AUGUSTUS	transcript	10935136	10937655	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	stop_codon	10935133	10935135	.	-	0	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	CDS	10935136	10935195	1	-	0	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	exon	10935136	10935195	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	intron	10935196	10935338	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	CDS	10935339	10935405	1	-	1	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	exon	10935339	10935405	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	intron	10935406	10935487	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	CDS	10935488	10935588	1	-	0	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	exon	10935488	10935588	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	intron	10935589	10935742	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	CDS	10935743	10935801	1	-	2	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	exon	10935743	10935801	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	intron	10935802	10936011	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	CDS	10936012	10936144	1	-	0	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	exon	10936012	10936144	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	intron	10936145	10936228	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	CDS	10936229	10936300	1	-	0	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	exon	10936229	10936300	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	intron	10936301	10936419	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	CDS	10936420	10936470	0.9	-	0	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	exon	10936420	10936470	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	intron	10936471	10936579	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	CDS	10936580	10936691	0.82	-	1	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	exon	10936580	10936691	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	intron	10936692	10936786	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	CDS	10936787	10937001	1	-	0	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	exon	10936787	10937001	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	intron	10937002	10937107	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	CDS	10937108	10937396	0.99	-	1	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	exon	10937108	10937396	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	intron	10937397	10937626	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	CDS	10937627	10937655	1	-	0	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	exon	10937627	10937655	.	-	.	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
Ledus.S5	AUGUSTUS	start_codon	10937653	10937655	.	-	0	transcript_id "Ledus.S5G112500.t1"; gene_id "Ledus.S5G112500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8841.t1 is derived from g9871.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2232561	2233126	.	-	.	Ledus.S3G031800
Ledus.S3	AUGUSTUS	transcript	2232561	2233126	.	-	.	transcript_id "Ledus.S3G031800.t1"; gene_id "Ledus.S3G031800"
Ledus.S3	AUGUSTUS	stop_codon	2232558	2232560	.	-	0	transcript_id "Ledus.S3G031800.t1"; gene_id "Ledus.S3G031800"
Ledus.S3	AUGUSTUS	CDS	2232561	2232570	0.95	-	1	transcript_id "Ledus.S3G031800.t1"; gene_id "Ledus.S3G031800"
Ledus.S3	AUGUSTUS	exon	2232561	2232570	.	-	.	transcript_id "Ledus.S3G031800.t1"; gene_id "Ledus.S3G031800"
Ledus.S3	AUGUSTUS	intron	2232571	2232655	.	-	.	transcript_id "Ledus.S3G031800.t1"; gene_id "Ledus.S3G031800"
Ledus.S3	AUGUSTUS	CDS	2232656	2232933	0.56	-	0	transcript_id "Ledus.S3G031800.t1"; gene_id "Ledus.S3G031800"
Ledus.S3	AUGUSTUS	exon	2232656	2232933	.	-	.	transcript_id "Ledus.S3G031800.t1"; gene_id "Ledus.S3G031800"
Ledus.S3	AUGUSTUS	intron	2232934	2233027	.	-	.	transcript_id "Ledus.S3G031800.t1"; gene_id "Ledus.S3G031800"
Ledus.S3	AUGUSTUS	CDS	2233028	2233126	0.47	-	0	transcript_id "Ledus.S3G031800.t1"; gene_id "Ledus.S3G031800"
Ledus.S3	AUGUSTUS	exon	2233028	2233126	.	-	.	transcript_id "Ledus.S3G031800.t1"; gene_id "Ledus.S3G031800"
Ledus.S3	AUGUSTUS	start_codon	2233124	2233126	.	-	0	transcript_id "Ledus.S3G031800.t1"; gene_id "Ledus.S3G031800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1226.t1 is derived from g8087.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8737823	8739233	.	-	.	Ledus.S2G110800
Ledus.S2	AUGUSTUS	transcript	8737823	8739233	.	-	.	transcript_id "Ledus.S2G110800.t1"; gene_id "Ledus.S2G110800"
Ledus.S2	AUGUSTUS	stop_codon	8737820	8737822	.	-	0	transcript_id "Ledus.S2G110800.t1"; gene_id "Ledus.S2G110800"
Ledus.S2	AUGUSTUS	CDS	8737823	8738234	0.97	-	1	transcript_id "Ledus.S2G110800.t1"; gene_id "Ledus.S2G110800"
Ledus.S2	AUGUSTUS	exon	8737823	8738234	.	-	.	transcript_id "Ledus.S2G110800.t1"; gene_id "Ledus.S2G110800"
Ledus.S2	AUGUSTUS	intron	8738235	8738324	.	-	.	transcript_id "Ledus.S2G110800.t1"; gene_id "Ledus.S2G110800"
Ledus.S2	AUGUSTUS	CDS	8738325	8739072	0.93	-	2	transcript_id "Ledus.S2G110800.t1"; gene_id "Ledus.S2G110800"
Ledus.S2	AUGUSTUS	exon	8738325	8739072	.	-	.	transcript_id "Ledus.S2G110800.t1"; gene_id "Ledus.S2G110800"
Ledus.S2	AUGUSTUS	intron	8739073	8739208	.	-	.	transcript_id "Ledus.S2G110800.t1"; gene_id "Ledus.S2G110800"
Ledus.S2	AUGUSTUS	CDS	8739209	8739233	0.93	-	0	transcript_id "Ledus.S2G110800.t1"; gene_id "Ledus.S2G110800"
Ledus.S2	AUGUSTUS	exon	8739209	8739233	.	-	.	transcript_id "Ledus.S2G110800.t1"; gene_id "Ledus.S2G110800"
Ledus.S2	AUGUSTUS	start_codon	8739231	8739233	.	-	0	transcript_id "Ledus.S2G110800.t1"; gene_id "Ledus.S2G110800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg555.t1 is derived from g7416.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3305626	3305925	.	+	.	Ledus.S2G043700
Ledus.S2	AUGUSTUS	transcript	3305626	3305925	.	+	.	transcript_id "Ledus.S2G043700.t1"; gene_id "Ledus.S2G043700"
Ledus.S2	AUGUSTUS	start_codon	3305626	3305628	.	+	0	transcript_id "Ledus.S2G043700.t1"; gene_id "Ledus.S2G043700"
Ledus.S2	AUGUSTUS	CDS	3305626	3305925	0.92	+	0	transcript_id "Ledus.S2G043700.t1"; gene_id "Ledus.S2G043700"
Ledus.S2	AUGUSTUS	exon	3305626	3305925	.	+	.	transcript_id "Ledus.S2G043700.t1"; gene_id "Ledus.S2G043700"
Ledus.S2	AUGUSTUS	stop_codon	3305926	3305928	.	+	0	transcript_id "Ledus.S2G043700.t1"; gene_id "Ledus.S2G043700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10085.t1 is derived from g11115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12564883	12565896	.	+	.	Ledus.S3G156200
Ledus.S3	AUGUSTUS	transcript	12564883	12565896	.	+	.	transcript_id "Ledus.S3G156200.t1"; gene_id "Ledus.S3G156200"
Ledus.S3	AUGUSTUS	start_codon	12564883	12564885	.	+	0	transcript_id "Ledus.S3G156200.t1"; gene_id "Ledus.S3G156200"
Ledus.S3	AUGUSTUS	CDS	12564883	12565896	1	+	0	transcript_id "Ledus.S3G156200.t1"; gene_id "Ledus.S3G156200"
Ledus.S3	AUGUSTUS	exon	12564883	12565896	.	+	.	transcript_id "Ledus.S3G156200.t1"; gene_id "Ledus.S3G156200"
Ledus.S3	AUGUSTUS	stop_codon	12565897	12565899	.	+	0	transcript_id "Ledus.S3G156200.t1"; gene_id "Ledus.S3G156200"
# This transcript jg10061.t2 is derived from g11091.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10062.t1 is derived from g11092.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12374297	12375233	.	-	.	Ledus.S3G153900
Ledus.S3	AUGUSTUS	transcript	12374297	12375233	.	-	.	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	stop_codon	12374294	12374296	.	-	0	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	CDS	12374297	12374470	0.95	-	0	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	exon	12374297	12374470	.	-	.	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	intron	12374471	12374565	.	-	.	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	CDS	12374566	12374702	1	-	2	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	exon	12374566	12374702	.	-	.	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	intron	12374703	12374786	.	-	.	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	CDS	12374787	12374923	1	-	1	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	exon	12374787	12374923	.	-	.	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	intron	12374924	12375009	.	-	.	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	CDS	12375010	12375233	0.99	-	0	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	exon	12375010	12375233	.	-	.	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
Ledus.S3	AUGUSTUS	start_codon	12375231	12375233	.	-	0	transcript_id "Ledus.S3G153900.t1"; gene_id "Ledus.S3G153900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg712.t1 is derived from g7573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4414194	4414709	.	-	.	Ledus.S2G059400
Ledus.S2	AUGUSTUS	transcript	4414194	4414709	.	-	.	transcript_id "Ledus.S2G059400.t1"; gene_id "Ledus.S2G059400"
Ledus.S2	AUGUSTUS	stop_codon	4414191	4414193	.	-	0	transcript_id "Ledus.S2G059400.t1"; gene_id "Ledus.S2G059400"
Ledus.S2	AUGUSTUS	CDS	4414194	4414313	0.8	-	0	transcript_id "Ledus.S2G059400.t1"; gene_id "Ledus.S2G059400"
Ledus.S2	AUGUSTUS	exon	4414194	4414313	.	-	.	transcript_id "Ledus.S2G059400.t1"; gene_id "Ledus.S2G059400"
Ledus.S2	AUGUSTUS	intron	4414314	4414391	.	-	.	transcript_id "Ledus.S2G059400.t1"; gene_id "Ledus.S2G059400"
Ledus.S2	AUGUSTUS	CDS	4414392	4414709	0.97	-	0	transcript_id "Ledus.S2G059400.t1"; gene_id "Ledus.S2G059400"
Ledus.S2	AUGUSTUS	exon	4414392	4414709	.	-	.	transcript_id "Ledus.S2G059400.t1"; gene_id "Ledus.S2G059400"
Ledus.S2	AUGUSTUS	start_codon	4414707	4414709	.	-	0	transcript_id "Ledus.S2G059400.t1"; gene_id "Ledus.S2G059400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12259.t1 is derived from g5879.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10684307	10685837	.	-	.	Ledus.S4G141500
Ledus.S4	AUGUSTUS	transcript	10684307	10685837	.	-	.	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	stop_codon	10684304	10684306	.	-	0	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	CDS	10684307	10684486	1	-	0	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	exon	10684307	10684486	.	-	.	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	intron	10684487	10684561	.	-	.	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	CDS	10684562	10684837	1	-	0	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	exon	10684562	10684837	.	-	.	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	intron	10684838	10684919	.	-	.	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	CDS	10684920	10685051	1	-	0	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	exon	10684920	10685051	.	-	.	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	intron	10685052	10685220	.	-	.	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	CDS	10685221	10685555	1	-	2	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	exon	10685221	10685555	.	-	.	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	intron	10685556	10685638	.	-	.	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	CDS	10685639	10685837	0.92	-	0	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	exon	10685639	10685837	.	-	.	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
Ledus.S4	AUGUSTUS	start_codon	10685835	10685837	.	-	0	transcript_id "Ledus.S4G141500.t1"; gene_id "Ledus.S4G141500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2846.t1 is derived from g280.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4147164	4148070	.	+	.	Ledus.S1G026700
Ledus.S1	AUGUSTUS	transcript	4147164	4148070	.	+	.	transcript_id "Ledus.S1G026700.t1"; gene_id "Ledus.S1G026700"
Ledus.S1	AUGUSTUS	start_codon	4147164	4147166	.	+	0	transcript_id "Ledus.S1G026700.t1"; gene_id "Ledus.S1G026700"
Ledus.S1	AUGUSTUS	CDS	4147164	4147266	0.75	+	0	transcript_id "Ledus.S1G026700.t1"; gene_id "Ledus.S1G026700"
Ledus.S1	AUGUSTUS	exon	4147164	4147266	.	+	.	transcript_id "Ledus.S1G026700.t1"; gene_id "Ledus.S1G026700"
Ledus.S1	AUGUSTUS	intron	4147267	4147347	.	+	.	transcript_id "Ledus.S1G026700.t1"; gene_id "Ledus.S1G026700"
Ledus.S1	AUGUSTUS	CDS	4147348	4147663	1	+	2	transcript_id "Ledus.S1G026700.t1"; gene_id "Ledus.S1G026700"
Ledus.S1	AUGUSTUS	exon	4147348	4147663	.	+	.	transcript_id "Ledus.S1G026700.t1"; gene_id "Ledus.S1G026700"
Ledus.S1	AUGUSTUS	intron	4147664	4147763	.	+	.	transcript_id "Ledus.S1G026700.t1"; gene_id "Ledus.S1G026700"
Ledus.S1	AUGUSTUS	CDS	4147764	4148070	1	+	1	transcript_id "Ledus.S1G026700.t1"; gene_id "Ledus.S1G026700"
Ledus.S1	AUGUSTUS	exon	4147764	4148070	.	+	.	transcript_id "Ledus.S1G026700.t1"; gene_id "Ledus.S1G026700"
Ledus.S1	AUGUSTUS	stop_codon	4148071	4148073	.	+	0	transcript_id "Ledus.S1G026700.t1"; gene_id "Ledus.S1G026700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7096.t1 is derived from g6627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1518825	1526342	.	+	.	Ledus.C7G015700
Ledus.C7	AUGUSTUS	transcript	1518825	1526342	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	start_codon	1518825	1518827	.	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1518825	1519183	0.62	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1518825	1519183	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1519184	1519319	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1519320	1519440	0.91	+	1	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1519320	1519440	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1519441	1519532	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1519533	1519621	1	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1519533	1519621	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1519622	1519723	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1519724	1519808	1	+	1	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1519724	1519808	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1519809	1519907	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1519908	1520067	1	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1519908	1520067	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1520068	1520204	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1520205	1520281	1	+	2	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1520205	1520281	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1520282	1520414	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1520415	1520559	1	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1520415	1520559	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1520560	1520700	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1520701	1521002	0.98	+	2	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1520701	1521002	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1521003	1521087	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1521088	1521369	1	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1521088	1521369	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1521370	1521590	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1521591	1521907	0.98	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1521591	1521907	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1521908	1522024	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1522025	1522185	1	+	1	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1522025	1522185	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1522186	1522435	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1522436	1522539	1	+	2	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1522436	1522539	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1522540	1522643	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1522644	1522800	1	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1522644	1522800	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1522801	1522943	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1522944	1523066	1	+	2	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1522944	1523066	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1523067	1523310	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1523311	1523477	0.95	+	2	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1523311	1523477	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1523478	1523586	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1523587	1523919	1	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1523587	1523919	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1523920	1524016	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1524017	1524307	1	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1524017	1524307	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1524308	1524413	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1524414	1524497	0.99	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1524414	1524497	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1524498	1524611	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1524612	1524745	1	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1524612	1524745	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1524746	1524829	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1524830	1525057	0.99	+	1	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1524830	1525057	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1525058	1525284	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1525285	1525456	1	+	1	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1525285	1525456	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1525457	1525540	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1525541	1525628	1	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1525541	1525628	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1525629	1525808	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1525809	1525975	0.96	+	2	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1525809	1525975	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	intron	1525976	1526078	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	CDS	1526079	1526342	0.73	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	exon	1526079	1526342	.	+	.	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
Ledus.C7	AUGUSTUS	stop_codon	1526343	1526345	.	+	0	transcript_id "Ledus.C7G015700.t1"; gene_id "Ledus.C7G015700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6355.t1 is derived from g3798.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30720492	30720946	.	+	.	Ledus.S1G377600
Ledus.S1	AUGUSTUS	transcript	30720492	30720946	.	+	.	transcript_id "Ledus.S1G377600.t1"; gene_id "Ledus.S1G377600"
Ledus.S1	AUGUSTUS	start_codon	30720492	30720494	.	+	0	transcript_id "Ledus.S1G377600.t1"; gene_id "Ledus.S1G377600"
Ledus.S1	AUGUSTUS	CDS	30720492	30720716	0.65	+	0	transcript_id "Ledus.S1G377600.t1"; gene_id "Ledus.S1G377600"
Ledus.S1	AUGUSTUS	exon	30720492	30720716	.	+	.	transcript_id "Ledus.S1G377600.t1"; gene_id "Ledus.S1G377600"
Ledus.S1	AUGUSTUS	intron	30720717	30720820	.	+	.	transcript_id "Ledus.S1G377600.t1"; gene_id "Ledus.S1G377600"
Ledus.S1	AUGUSTUS	CDS	30720821	30720946	0.6	+	0	transcript_id "Ledus.S1G377600.t1"; gene_id "Ledus.S1G377600"
Ledus.S1	AUGUSTUS	exon	30720821	30720946	.	+	.	transcript_id "Ledus.S1G377600.t1"; gene_id "Ledus.S1G377600"
Ledus.S1	AUGUSTUS	stop_codon	30720947	30720949	.	+	0	transcript_id "Ledus.S1G377600.t1"; gene_id "Ledus.S1G377600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4464.t1 is derived from g1900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17199124	17200356	.	-	.	Ledus.S1G188500
Ledus.S1	AUGUSTUS	transcript	17199124	17200356	.	-	.	transcript_id "Ledus.S1G188500.t1"; gene_id "Ledus.S1G188500"
Ledus.S1	AUGUSTUS	stop_codon	17199121	17199123	.	-	0	transcript_id "Ledus.S1G188500.t1"; gene_id "Ledus.S1G188500"
Ledus.S1	AUGUSTUS	CDS	17199124	17200356	0.71	-	0	transcript_id "Ledus.S1G188500.t1"; gene_id "Ledus.S1G188500"
Ledus.S1	AUGUSTUS	exon	17199124	17200356	.	-	.	transcript_id "Ledus.S1G188500.t1"; gene_id "Ledus.S1G188500"
Ledus.S1	AUGUSTUS	start_codon	17200354	17200356	.	-	0	transcript_id "Ledus.S1G188500.t1"; gene_id "Ledus.S1G188500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1916.t1 is derived from g8779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13385162	13386917	.	-	.	Ledus.S2G179800
Ledus.S2	AUGUSTUS	transcript	13385162	13386917	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	stop_codon	13385159	13385161	.	-	0	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	CDS	13385162	13385327	0.96	-	1	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	exon	13385162	13385327	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	intron	13385328	13385401	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	CDS	13385402	13385445	1	-	0	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	exon	13385402	13385445	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	intron	13385446	13385542	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	CDS	13385543	13385611	1	-	0	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	exon	13385543	13385611	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	intron	13385612	13385691	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	CDS	13385692	13385751	1	-	0	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	exon	13385692	13385751	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	intron	13385752	13385823	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	CDS	13385824	13386223	0.99	-	1	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	exon	13385824	13386223	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	intron	13386224	13386327	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	CDS	13386328	13386484	1	-	2	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	exon	13386328	13386484	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	intron	13386485	13386565	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	CDS	13386566	13386917	0.62	-	0	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	exon	13386566	13386917	.	-	.	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
Ledus.S2	AUGUSTUS	start_codon	13386915	13386917	.	-	0	transcript_id "Ledus.S2G179800.t1"; gene_id "Ledus.S2G179800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1255.t1 is derived from g8116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8917873	8918118	.	-	.	Ledus.S2G113700
Ledus.S2	AUGUSTUS	transcript	8917873	8918118	.	-	.	transcript_id "Ledus.S2G113700.t1"; gene_id "Ledus.S2G113700"
Ledus.S2	AUGUSTUS	stop_codon	8917870	8917872	.	-	0	transcript_id "Ledus.S2G113700.t1"; gene_id "Ledus.S2G113700"
Ledus.S2	AUGUSTUS	CDS	8917873	8918118	0.01	-	0	transcript_id "Ledus.S2G113700.t1"; gene_id "Ledus.S2G113700"
Ledus.S2	AUGUSTUS	exon	8917873	8918118	.	-	.	transcript_id "Ledus.S2G113700.t1"; gene_id "Ledus.S2G113700"
Ledus.S2	AUGUSTUS	start_codon	8918116	8918118	.	-	0	transcript_id "Ledus.S2G113700.t1"; gene_id "Ledus.S2G113700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13114.t1 is derived from g6924.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6134672	6134968	.	+	.	Ledus.S6G017600
Ledus.S6	AUGUSTUS	transcript	6134672	6134968	.	+	.	transcript_id "Ledus.S6G017600.t1"; gene_id "Ledus.S6G017600"
Ledus.S6	AUGUSTUS	start_codon	6134672	6134674	.	+	0	transcript_id "Ledus.S6G017600.t1"; gene_id "Ledus.S6G017600"
Ledus.S6	AUGUSTUS	CDS	6134672	6134968	0.68	+	0	transcript_id "Ledus.S6G017600.t1"; gene_id "Ledus.S6G017600"
Ledus.S6	AUGUSTUS	exon	6134672	6134968	.	+	.	transcript_id "Ledus.S6G017600.t1"; gene_id "Ledus.S6G017600"
Ledus.S6	AUGUSTUS	stop_codon	6134969	6134971	.	+	0	transcript_id "Ledus.S6G017600.t1"; gene_id "Ledus.S6G017600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4144.t1 is derived from g1580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14939461	14941352	.	-	.	Ledus.S1G156500
Ledus.S1	AUGUSTUS	transcript	14939461	14941352	.	-	.	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	stop_codon	14939458	14939460	.	-	0	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	CDS	14939461	14939532	1	-	0	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	exon	14939461	14939532	.	-	.	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	intron	14939533	14939658	.	-	.	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	CDS	14939659	14939821	1	-	1	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	exon	14939659	14939821	.	-	.	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	intron	14939822	14939921	.	-	.	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	CDS	14939922	14940210	0.99	-	2	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	exon	14939922	14940210	.	-	.	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	intron	14940211	14940336	.	-	.	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	CDS	14940337	14940534	1	-	2	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	exon	14940337	14940534	.	-	.	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	intron	14940535	14940766	.	-	.	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	CDS	14940767	14941352	0.97	-	0	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	exon	14940767	14941352	.	-	.	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
Ledus.S1	AUGUSTUS	start_codon	14941350	14941352	.	-	0	transcript_id "Ledus.S1G156500.t1"; gene_id "Ledus.S1G156500"
# This transcript jg7530.t2 is derived from g12201.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7531.t1 is derived from g12202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3639304	3640694	.	-	.	Ledus.S5G030900
Ledus.S5	AUGUSTUS	transcript	3639304	3640694	.	-	.	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	stop_codon	3639301	3639303	.	-	0	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	CDS	3639304	3639317	1	-	2	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	exon	3639304	3639317	.	-	.	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	intron	3639318	3639454	.	-	.	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	CDS	3639455	3639755	1	-	0	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	exon	3639455	3639755	.	-	.	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	intron	3639756	3639851	.	-	.	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	CDS	3639852	3639935	1	-	0	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	exon	3639852	3639935	.	-	.	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	intron	3639936	3640051	.	-	.	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	CDS	3640052	3640204	1	-	0	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	exon	3640052	3640204	.	-	.	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	intron	3640205	3640334	.	-	.	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	CDS	3640335	3640487	0.76	-	0	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	exon	3640335	3640487	.	-	.	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	intron	3640488	3640589	.	-	.	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	CDS	3640590	3640694	1	-	0	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	exon	3640590	3640694	.	-	.	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
Ledus.S5	AUGUSTUS	start_codon	3640692	3640694	.	-	0	transcript_id "Ledus.S5G030900.t1"; gene_id "Ledus.S5G030900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12617.t1 is derived from g6239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13244536	13246006	.	-	.	Ledus.S4G177300
Ledus.S4	AUGUSTUS	transcript	13244536	13246006	.	-	.	transcript_id "Ledus.S4G177300.t1"; gene_id "Ledus.S4G177300"
Ledus.S4	AUGUSTUS	stop_codon	13244533	13244535	.	-	0	transcript_id "Ledus.S4G177300.t1"; gene_id "Ledus.S4G177300"
Ledus.S4	AUGUSTUS	CDS	13244536	13244636	1	-	2	transcript_id "Ledus.S4G177300.t1"; gene_id "Ledus.S4G177300"
Ledus.S4	AUGUSTUS	exon	13244536	13244636	.	-	.	transcript_id "Ledus.S4G177300.t1"; gene_id "Ledus.S4G177300"
Ledus.S4	AUGUSTUS	intron	13244637	13244723	.	-	.	transcript_id "Ledus.S4G177300.t1"; gene_id "Ledus.S4G177300"
Ledus.S4	AUGUSTUS	CDS	13244724	13245360	1	-	0	transcript_id "Ledus.S4G177300.t1"; gene_id "Ledus.S4G177300"
Ledus.S4	AUGUSTUS	exon	13244724	13245360	.	-	.	transcript_id "Ledus.S4G177300.t1"; gene_id "Ledus.S4G177300"
Ledus.S4	AUGUSTUS	intron	13245361	13245493	.	-	.	transcript_id "Ledus.S4G177300.t1"; gene_id "Ledus.S4G177300"
Ledus.S4	AUGUSTUS	CDS	13245494	13246006	0.5	-	0	transcript_id "Ledus.S4G177300.t1"; gene_id "Ledus.S4G177300"
Ledus.S4	AUGUSTUS	exon	13245494	13246006	.	-	.	transcript_id "Ledus.S4G177300.t1"; gene_id "Ledus.S4G177300"
Ledus.S4	AUGUSTUS	start_codon	13246004	13246006	.	-	0	transcript_id "Ledus.S4G177300.t1"; gene_id "Ledus.S4G177300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7634.t1 is derived from g12305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4620213	4620410	.	-	.	Ledus.S5G041200
Ledus.S5	AUGUSTUS	transcript	4620213	4620410	.	-	.	transcript_id "Ledus.S5G041200.t1"; gene_id "Ledus.S5G041200"
Ledus.S5	AUGUSTUS	stop_codon	4620210	4620212	.	-	0	transcript_id "Ledus.S5G041200.t1"; gene_id "Ledus.S5G041200"
Ledus.S5	AUGUSTUS	CDS	4620213	4620410	0.97	-	0	transcript_id "Ledus.S5G041200.t1"; gene_id "Ledus.S5G041200"
Ledus.S5	AUGUSTUS	exon	4620213	4620410	.	-	.	transcript_id "Ledus.S5G041200.t1"; gene_id "Ledus.S5G041200"
Ledus.S5	AUGUSTUS	start_codon	4620408	4620410	.	-	0	transcript_id "Ledus.S5G041200.t1"; gene_id "Ledus.S5G041200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3488.t1 is derived from g923.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8691817	8693927	.	-	.	Ledus.S1G090900
Ledus.S1	AUGUSTUS	transcript	8691817	8693927	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	stop_codon	8691814	8691816	.	-	0	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	CDS	8691817	8691940	1	-	1	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	exon	8691817	8691940	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	intron	8691941	8692034	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	CDS	8692035	8692113	1	-	2	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	exon	8692035	8692113	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	intron	8692114	8692191	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	CDS	8692192	8692361	1	-	1	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	exon	8692192	8692361	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	intron	8692362	8692473	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	CDS	8692474	8692586	1	-	0	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	exon	8692474	8692586	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	intron	8692587	8692684	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	CDS	8692685	8692753	1	-	0	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	exon	8692685	8692753	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	intron	8692754	8692835	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	CDS	8692836	8692919	1	-	0	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	exon	8692836	8692919	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	intron	8692920	8693012	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	CDS	8693013	8693069	1	-	0	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	exon	8693013	8693069	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	intron	8693070	8693174	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	CDS	8693175	8693237	0.74	-	0	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	exon	8693175	8693237	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	intron	8693238	8693342	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	CDS	8693343	8693405	0.75	-	0	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	exon	8693343	8693405	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	intron	8693406	8693501	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	CDS	8693502	8693594	1	-	0	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	exon	8693502	8693594	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	intron	8693595	8693888	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	CDS	8693889	8693927	1	-	0	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	exon	8693889	8693927	.	-	.	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
Ledus.S1	AUGUSTUS	start_codon	8693925	8693927	.	-	0	transcript_id "Ledus.S1G090900.t1"; gene_id "Ledus.S1G090900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6591.t1 is derived from g4034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32546819	32549277	.	+	.	Ledus.S1G401200
Ledus.S1	AUGUSTUS	transcript	32546819	32549277	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	start_codon	32546819	32546821	.	+	0	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	CDS	32546819	32547014	0.56	+	0	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	exon	32546819	32547014	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	intron	32547015	32547238	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	CDS	32547239	32547447	0.64	+	2	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	exon	32547239	32547447	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	intron	32547448	32548215	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	CDS	32548216	32548313	1	+	0	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	exon	32548216	32548313	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	intron	32548314	32548429	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	CDS	32548430	32548460	0.97	+	1	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	exon	32548430	32548460	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	intron	32548461	32548571	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	CDS	32548572	32548671	1	+	0	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	exon	32548572	32548671	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	intron	32548672	32548766	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	CDS	32548767	32548837	1	+	2	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	exon	32548767	32548837	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	intron	32548838	32548930	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	CDS	32548931	32549074	1	+	0	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	exon	32548931	32549074	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	intron	32549075	32549187	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	CDS	32549188	32549277	0.98	+	0	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	exon	32549188	32549277	.	+	.	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
Ledus.S1	AUGUSTUS	stop_codon	32549278	32549280	.	+	0	transcript_id "Ledus.S1G401200.t1"; gene_id "Ledus.S1G401200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg103.t1 is derived from g9516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	423250	424979	.	-	.	Ledus.C8G006300
Ledus.C8	AUGUSTUS	transcript	423250	424979	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	stop_codon	423247	423249	.	-	0	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	CDS	423250	423285	0.95	-	0	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	exon	423250	423285	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	intron	423286	423368	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	CDS	423369	423443	1	-	0	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	exon	423369	423443	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	intron	423444	423547	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	CDS	423548	423690	0.99	-	2	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	exon	423548	423690	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	intron	423691	423786	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	CDS	423787	423975	1	-	2	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	exon	423787	423975	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	intron	423976	424061	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	CDS	424062	424131	1	-	0	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	exon	424062	424131	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	intron	424132	424220	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	CDS	424221	424397	0.99	-	0	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	exon	424221	424397	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	intron	424398	424499	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	CDS	424500	424675	0.99	-	2	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	exon	424500	424675	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	intron	424676	424840	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	CDS	424841	424979	0.99	-	0	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	exon	424841	424979	.	-	.	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
Ledus.C8	AUGUSTUS	start_codon	424977	424979	.	-	0	transcript_id "Ledus.C8G006300.t1"; gene_id "Ledus.C8G006300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11581.t1 is derived from g5199.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5382273	5384862	.	+	.	Ledus.S4G073700
Ledus.S4	AUGUSTUS	transcript	5382273	5384862	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	start_codon	5382273	5382275	.	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5382273	5382404	1	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5382273	5382404	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	intron	5382405	5382486	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5382487	5382569	1	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5382487	5382569	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	intron	5382570	5382662	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5382663	5382720	1	+	1	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5382663	5382720	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	intron	5382721	5382810	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5382811	5382873	0.99	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5382811	5382873	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	intron	5382874	5382985	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5382986	5383115	0.99	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5382986	5383115	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	intron	5383116	5383203	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5383204	5383487	1	+	2	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5383204	5383487	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	intron	5383488	5383629	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5383630	5383722	1	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5383630	5383722	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	intron	5383723	5383912	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5383913	5383984	1	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5383913	5383984	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	intron	5383985	5384080	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5384081	5384113	1	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5384081	5384113	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	intron	5384114	5384250	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5384251	5384373	1	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5384251	5384373	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	intron	5384374	5384481	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5384482	5384538	1	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5384482	5384538	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	intron	5384539	5384611	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5384612	5384695	0.44	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5384612	5384695	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	intron	5384696	5384817	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	CDS	5384818	5384862	0.43	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	exon	5384818	5384862	.	+	.	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
Ledus.S4	AUGUSTUS	stop_codon	5384863	5384865	.	+	0	transcript_id "Ledus.S4G073700.t1"; gene_id "Ledus.S4G073700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3644.t1 is derived from g1080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10361014	10363705	.	-	.	Ledus.S1G106500
Ledus.S1	AUGUSTUS	transcript	10361014	10363705	.	-	.	transcript_id "Ledus.S1G106500.t1"; gene_id "Ledus.S1G106500"
Ledus.S1	AUGUSTUS	stop_codon	10361011	10361013	.	-	0	transcript_id "Ledus.S1G106500.t1"; gene_id "Ledus.S1G106500"
Ledus.S1	AUGUSTUS	CDS	10361014	10361018	1	-	2	transcript_id "Ledus.S1G106500.t1"; gene_id "Ledus.S1G106500"
Ledus.S1	AUGUSTUS	exon	10361014	10361018	.	-	.	transcript_id "Ledus.S1G106500.t1"; gene_id "Ledus.S1G106500"
Ledus.S1	AUGUSTUS	intron	10361019	10361161	.	-	.	transcript_id "Ledus.S1G106500.t1"; gene_id "Ledus.S1G106500"
Ledus.S1	AUGUSTUS	CDS	10361162	10361190	0.99	-	1	transcript_id "Ledus.S1G106500.t1"; gene_id "Ledus.S1G106500"
Ledus.S1	AUGUSTUS	exon	10361162	10361190	.	-	.	transcript_id "Ledus.S1G106500.t1"; gene_id "Ledus.S1G106500"
Ledus.S1	AUGUSTUS	intron	10361191	10361282	.	-	.	transcript_id "Ledus.S1G106500.t1"; gene_id "Ledus.S1G106500"
Ledus.S1	AUGUSTUS	CDS	10361283	10363705	0.86	-	0	transcript_id "Ledus.S1G106500.t1"; gene_id "Ledus.S1G106500"
Ledus.S1	AUGUSTUS	exon	10361283	10363705	.	-	.	transcript_id "Ledus.S1G106500.t1"; gene_id "Ledus.S1G106500"
Ledus.S1	AUGUSTUS	start_codon	10363703	10363705	.	-	0	transcript_id "Ledus.S1G106500.t1"; gene_id "Ledus.S1G106500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11977.t1 is derived from g5596.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8246308	8248317	.	-	.	Ledus.S4G113300
Ledus.S4	AUGUSTUS	transcript	8246308	8248317	.	-	.	transcript_id "Ledus.S4G113300.t1"; gene_id "Ledus.S4G113300"
Ledus.S4	AUGUSTUS	stop_codon	8246305	8246307	.	-	0	transcript_id "Ledus.S4G113300.t1"; gene_id "Ledus.S4G113300"
Ledus.S4	AUGUSTUS	CDS	8246308	8246580	0.97	-	0	transcript_id "Ledus.S4G113300.t1"; gene_id "Ledus.S4G113300"
Ledus.S4	AUGUSTUS	exon	8246308	8246580	.	-	.	transcript_id "Ledus.S4G113300.t1"; gene_id "Ledus.S4G113300"
Ledus.S4	AUGUSTUS	intron	8246581	8246680	.	-	.	transcript_id "Ledus.S4G113300.t1"; gene_id "Ledus.S4G113300"
Ledus.S4	AUGUSTUS	CDS	8246681	8247943	1	-	0	transcript_id "Ledus.S4G113300.t1"; gene_id "Ledus.S4G113300"
Ledus.S4	AUGUSTUS	exon	8246681	8247943	.	-	.	transcript_id "Ledus.S4G113300.t1"; gene_id "Ledus.S4G113300"
Ledus.S4	AUGUSTUS	intron	8247944	8248161	.	-	.	transcript_id "Ledus.S4G113300.t1"; gene_id "Ledus.S4G113300"
Ledus.S4	AUGUSTUS	CDS	8248162	8248317	0.57	-	0	transcript_id "Ledus.S4G113300.t1"; gene_id "Ledus.S4G113300"
Ledus.S4	AUGUSTUS	exon	8248162	8248317	.	-	.	transcript_id "Ledus.S4G113300.t1"; gene_id "Ledus.S4G113300"
Ledus.S4	AUGUSTUS	start_codon	8248315	8248317	.	-	0	transcript_id "Ledus.S4G113300.t1"; gene_id "Ledus.S4G113300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4386.t1 is derived from g1822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16750660	16751541	.	-	.	Ledus.S1G180700
Ledus.S1	AUGUSTUS	transcript	16750660	16751541	.	-	.	transcript_id "Ledus.S1G180700.t1"; gene_id "Ledus.S1G180700"
Ledus.S1	AUGUSTUS	stop_codon	16750657	16750659	.	-	0	transcript_id "Ledus.S1G180700.t1"; gene_id "Ledus.S1G180700"
Ledus.S1	AUGUSTUS	CDS	16750660	16750842	1	-	0	transcript_id "Ledus.S1G180700.t1"; gene_id "Ledus.S1G180700"
Ledus.S1	AUGUSTUS	exon	16750660	16750842	.	-	.	transcript_id "Ledus.S1G180700.t1"; gene_id "Ledus.S1G180700"
Ledus.S1	AUGUSTUS	intron	16750843	16750921	.	-	.	transcript_id "Ledus.S1G180700.t1"; gene_id "Ledus.S1G180700"
Ledus.S1	AUGUSTUS	CDS	16750922	16751062	0.9	-	0	transcript_id "Ledus.S1G180700.t1"; gene_id "Ledus.S1G180700"
Ledus.S1	AUGUSTUS	exon	16750922	16751062	.	-	.	transcript_id "Ledus.S1G180700.t1"; gene_id "Ledus.S1G180700"
Ledus.S1	AUGUSTUS	intron	16751063	16751157	.	-	.	transcript_id "Ledus.S1G180700.t1"; gene_id "Ledus.S1G180700"
Ledus.S1	AUGUSTUS	CDS	16751158	16751541	0.7	-	0	transcript_id "Ledus.S1G180700.t1"; gene_id "Ledus.S1G180700"
Ledus.S1	AUGUSTUS	exon	16751158	16751541	.	-	.	transcript_id "Ledus.S1G180700.t1"; gene_id "Ledus.S1G180700"
Ledus.S1	AUGUSTUS	start_codon	16751539	16751541	.	-	0	transcript_id "Ledus.S1G180700.t1"; gene_id "Ledus.S1G180700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9494.t1 is derived from g10524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7431704	7434473	.	+	.	Ledus.S3G097100
Ledus.S3	AUGUSTUS	transcript	7431704	7434473	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	start_codon	7431704	7431706	.	+	0	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	CDS	7431704	7431984	0.94	+	0	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	exon	7431704	7431984	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	intron	7431985	7432621	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	CDS	7432622	7432652	0.9	+	1	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	exon	7432622	7432652	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	intron	7432653	7432734	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	CDS	7432735	7433327	0.58	+	0	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	exon	7432735	7433327	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	intron	7433328	7433514	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	CDS	7433515	7433554	1	+	1	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	exon	7433515	7433554	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	intron	7433555	7433675	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	CDS	7433676	7433740	1	+	0	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	exon	7433676	7433740	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	intron	7433741	7433844	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	CDS	7433845	7433950	0.99	+	1	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	exon	7433845	7433950	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	intron	7433951	7434039	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	CDS	7434040	7434108	0.94	+	0	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	exon	7434040	7434108	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	intron	7434109	7434219	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	CDS	7434220	7434282	0.95	+	0	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	exon	7434220	7434282	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	intron	7434283	7434416	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	CDS	7434417	7434473	1	+	0	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	exon	7434417	7434473	.	+	.	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
Ledus.S3	AUGUSTUS	stop_codon	7434474	7434476	.	+	0	transcript_id "Ledus.S3G097100.t1"; gene_id "Ledus.S3G097100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1545.t1 is derived from g8406.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10873304	10875560	.	+	.	Ledus.S2G142700
Ledus.S2	AUGUSTUS	transcript	10873304	10875560	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	start_codon	10873304	10873306	.	+	0	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	CDS	10873304	10873324	0.3	+	0	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	exon	10873304	10873324	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	intron	10873325	10873409	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	CDS	10873410	10873415	0.37	+	0	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	exon	10873410	10873415	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	intron	10873416	10873514	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	CDS	10873515	10873522	0.37	+	0	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	exon	10873515	10873522	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	intron	10873523	10873774	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	CDS	10873775	10873874	0.38	+	1	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	exon	10873775	10873874	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	intron	10873875	10874111	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	CDS	10874112	10874286	1	+	0	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	exon	10874112	10874286	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	intron	10874287	10874401	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	CDS	10874402	10874457	1	+	2	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	exon	10874402	10874457	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	intron	10874458	10874606	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	CDS	10874607	10874654	1	+	0	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	exon	10874607	10874654	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	intron	10874655	10874767	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	CDS	10874768	10874865	1	+	0	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	exon	10874768	10874865	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	intron	10874866	10875052	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	CDS	10875053	10875122	1	+	1	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	exon	10875053	10875122	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	intron	10875123	10875284	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	CDS	10875285	10875395	0.99	+	0	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	exon	10875285	10875395	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	intron	10875396	10875512	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	CDS	10875513	10875560	0.99	+	0	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	exon	10875513	10875560	.	+	.	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
Ledus.S2	AUGUSTUS	stop_codon	10875561	10875563	.	+	0	transcript_id "Ledus.S2G142700.t1"; gene_id "Ledus.S2G142700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12156.t1 is derived from g5775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10036433	10036711	.	+	.	Ledus.S4G131200
Ledus.S4	AUGUSTUS	transcript	10036433	10036711	.	+	.	transcript_id "Ledus.S4G131200.t1"; gene_id "Ledus.S4G131200"
Ledus.S4	AUGUSTUS	start_codon	10036433	10036435	.	+	0	transcript_id "Ledus.S4G131200.t1"; gene_id "Ledus.S4G131200"
Ledus.S4	AUGUSTUS	CDS	10036433	10036711	0.97	+	0	transcript_id "Ledus.S4G131200.t1"; gene_id "Ledus.S4G131200"
Ledus.S4	AUGUSTUS	exon	10036433	10036711	.	+	.	transcript_id "Ledus.S4G131200.t1"; gene_id "Ledus.S4G131200"
Ledus.S4	AUGUSTUS	stop_codon	10036712	10036714	.	+	0	transcript_id "Ledus.S4G131200.t1"; gene_id "Ledus.S4G131200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9511.t1 is derived from g10541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7522129	7525004	.	+	.	Ledus.S3G098800
Ledus.S3	AUGUSTUS	transcript	7522129	7525004	.	+	.	transcript_id "Ledus.S3G098800.t1"; gene_id "Ledus.S3G098800"
Ledus.S3	AUGUSTUS	start_codon	7522129	7522131	.	+	0	transcript_id "Ledus.S3G098800.t1"; gene_id "Ledus.S3G098800"
Ledus.S3	AUGUSTUS	CDS	7522129	7522636	0.94	+	0	transcript_id "Ledus.S3G098800.t1"; gene_id "Ledus.S3G098800"
Ledus.S3	AUGUSTUS	exon	7522129	7522636	.	+	.	transcript_id "Ledus.S3G098800.t1"; gene_id "Ledus.S3G098800"
Ledus.S3	AUGUSTUS	intron	7522637	7522954	.	+	.	transcript_id "Ledus.S3G098800.t1"; gene_id "Ledus.S3G098800"
Ledus.S3	AUGUSTUS	CDS	7522955	7523049	1	+	2	transcript_id "Ledus.S3G098800.t1"; gene_id "Ledus.S3G098800"
Ledus.S3	AUGUSTUS	exon	7522955	7523049	.	+	.	transcript_id "Ledus.S3G098800.t1"; gene_id "Ledus.S3G098800"
Ledus.S3	AUGUSTUS	intron	7523050	7523135	.	+	.	transcript_id "Ledus.S3G098800.t1"; gene_id "Ledus.S3G098800"
Ledus.S3	AUGUSTUS	CDS	7523136	7525004	1	+	0	transcript_id "Ledus.S3G098800.t1"; gene_id "Ledus.S3G098800"
Ledus.S3	AUGUSTUS	exon	7523136	7525004	.	+	.	transcript_id "Ledus.S3G098800.t1"; gene_id "Ledus.S3G098800"
Ledus.S3	AUGUSTUS	stop_codon	7525005	7525007	.	+	0	transcript_id "Ledus.S3G098800.t1"; gene_id "Ledus.S3G098800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4236.t1 is derived from g1672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15704105	15704602	.	-	.	Ledus.S1G165700
Ledus.S1	AUGUSTUS	transcript	15704105	15704602	.	-	.	transcript_id "Ledus.S1G165700.t1"; gene_id "Ledus.S1G165700"
Ledus.S1	AUGUSTUS	stop_codon	15704102	15704104	.	-	0	transcript_id "Ledus.S1G165700.t1"; gene_id "Ledus.S1G165700"
Ledus.S1	AUGUSTUS	CDS	15704105	15704602	0.63	-	0	transcript_id "Ledus.S1G165700.t1"; gene_id "Ledus.S1G165700"
Ledus.S1	AUGUSTUS	exon	15704105	15704602	.	-	.	transcript_id "Ledus.S1G165700.t1"; gene_id "Ledus.S1G165700"
Ledus.S1	AUGUSTUS	start_codon	15704600	15704602	.	-	0	transcript_id "Ledus.S1G165700.t1"; gene_id "Ledus.S1G165700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1008.t1 is derived from g7869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6707144	6707770	.	-	.	Ledus.S2G089000
Ledus.S2	AUGUSTUS	transcript	6707144	6707770	.	-	.	transcript_id "Ledus.S2G089000.t1"; gene_id "Ledus.S2G089000"
Ledus.S2	AUGUSTUS	stop_codon	6707141	6707143	.	-	0	transcript_id "Ledus.S2G089000.t1"; gene_id "Ledus.S2G089000"
Ledus.S2	AUGUSTUS	CDS	6707144	6707770	0.94	-	0	transcript_id "Ledus.S2G089000.t1"; gene_id "Ledus.S2G089000"
Ledus.S2	AUGUSTUS	exon	6707144	6707770	.	-	.	transcript_id "Ledus.S2G089000.t1"; gene_id "Ledus.S2G089000"
Ledus.S2	AUGUSTUS	start_codon	6707768	6707770	.	-	0	transcript_id "Ledus.S2G089000.t1"; gene_id "Ledus.S2G089000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4253.t1 is derived from g1689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15774868	15775949	.	+	.	Ledus.S1G167400
Ledus.S1	AUGUSTUS	transcript	15774868	15775949	.	+	.	transcript_id "Ledus.S1G167400.t1"; gene_id "Ledus.S1G167400"
Ledus.S1	AUGUSTUS	start_codon	15774868	15774870	.	+	0	transcript_id "Ledus.S1G167400.t1"; gene_id "Ledus.S1G167400"
Ledus.S1	AUGUSTUS	CDS	15774868	15775202	0.88	+	0	transcript_id "Ledus.S1G167400.t1"; gene_id "Ledus.S1G167400"
Ledus.S1	AUGUSTUS	exon	15774868	15775202	.	+	.	transcript_id "Ledus.S1G167400.t1"; gene_id "Ledus.S1G167400"
Ledus.S1	AUGUSTUS	intron	15775203	15775420	.	+	.	transcript_id "Ledus.S1G167400.t1"; gene_id "Ledus.S1G167400"
Ledus.S1	AUGUSTUS	CDS	15775421	15775949	1	+	1	transcript_id "Ledus.S1G167400.t1"; gene_id "Ledus.S1G167400"
Ledus.S1	AUGUSTUS	exon	15775421	15775949	.	+	.	transcript_id "Ledus.S1G167400.t1"; gene_id "Ledus.S1G167400"
Ledus.S1	AUGUSTUS	stop_codon	15775950	15775952	.	+	0	transcript_id "Ledus.S1G167400.t1"; gene_id "Ledus.S1G167400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13011.t1 is derived from g6821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2786585	2787428	.	+	.	Ledus.S6G007300
Ledus.S6	AUGUSTUS	transcript	2786585	2787428	.	+	.	transcript_id "Ledus.S6G007300.t1"; gene_id "Ledus.S6G007300"
Ledus.S6	AUGUSTUS	start_codon	2786585	2786587	.	+	0	transcript_id "Ledus.S6G007300.t1"; gene_id "Ledus.S6G007300"
Ledus.S6	AUGUSTUS	CDS	2786585	2786923	0.58	+	0	transcript_id "Ledus.S6G007300.t1"; gene_id "Ledus.S6G007300"
Ledus.S6	AUGUSTUS	exon	2786585	2786923	.	+	.	transcript_id "Ledus.S6G007300.t1"; gene_id "Ledus.S6G007300"
Ledus.S6	AUGUSTUS	intron	2786924	2787003	.	+	.	transcript_id "Ledus.S6G007300.t1"; gene_id "Ledus.S6G007300"
Ledus.S6	AUGUSTUS	CDS	2787004	2787178	1	+	0	transcript_id "Ledus.S6G007300.t1"; gene_id "Ledus.S6G007300"
Ledus.S6	AUGUSTUS	exon	2787004	2787178	.	+	.	transcript_id "Ledus.S6G007300.t1"; gene_id "Ledus.S6G007300"
Ledus.S6	AUGUSTUS	intron	2787179	2787378	.	+	.	transcript_id "Ledus.S6G007300.t1"; gene_id "Ledus.S6G007300"
Ledus.S6	AUGUSTUS	CDS	2787379	2787428	1	+	2	transcript_id "Ledus.S6G007300.t1"; gene_id "Ledus.S6G007300"
Ledus.S6	AUGUSTUS	exon	2787379	2787428	.	+	.	transcript_id "Ledus.S6G007300.t1"; gene_id "Ledus.S6G007300"
Ledus.S6	AUGUSTUS	stop_codon	2787429	2787431	.	+	0	transcript_id "Ledus.S6G007300.t1"; gene_id "Ledus.S6G007300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3688.t1 is derived from g1124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10855468	10855950	.	+	.	Ledus.S1G110900
Ledus.S1	AUGUSTUS	transcript	10855468	10855950	.	+	.	transcript_id "Ledus.S1G110900.t1"; gene_id "Ledus.S1G110900"
Ledus.S1	AUGUSTUS	start_codon	10855468	10855470	.	+	0	transcript_id "Ledus.S1G110900.t1"; gene_id "Ledus.S1G110900"
Ledus.S1	AUGUSTUS	CDS	10855468	10855950	0.41	+	0	transcript_id "Ledus.S1G110900.t1"; gene_id "Ledus.S1G110900"
Ledus.S1	AUGUSTUS	exon	10855468	10855950	.	+	.	transcript_id "Ledus.S1G110900.t1"; gene_id "Ledus.S1G110900"
Ledus.S1	AUGUSTUS	stop_codon	10855951	10855953	.	+	0	transcript_id "Ledus.S1G110900.t1"; gene_id "Ledus.S1G110900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg502.t1 is derived from g7363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2948329	2950137	.	+	.	Ledus.S2G038400
Ledus.S2	AUGUSTUS	transcript	2948329	2950137	.	+	.	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	start_codon	2948329	2948331	.	+	0	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	CDS	2948329	2948411	0.99	+	0	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	exon	2948329	2948411	.	+	.	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	intron	2948412	2948683	.	+	.	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	CDS	2948684	2948918	0.94	+	1	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	exon	2948684	2948918	.	+	.	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	intron	2948919	2949020	.	+	.	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	CDS	2949021	2949386	0.98	+	0	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	exon	2949021	2949386	.	+	.	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	intron	2949387	2949483	.	+	.	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	CDS	2949484	2950137	0.96	+	0	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	exon	2949484	2950137	.	+	.	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
Ledus.S2	AUGUSTUS	stop_codon	2950138	2950140	.	+	0	transcript_id "Ledus.S2G038400.t1"; gene_id "Ledus.S2G038400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1952.t1 is derived from g8815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13699296	13702562	.	+	.	Ledus.S2G183400
Ledus.S2	AUGUSTUS	transcript	13699296	13702562	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	start_codon	13699296	13699298	.	+	0	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	CDS	13699296	13699339	1	+	0	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	exon	13699296	13699339	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	intron	13699340	13699437	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	CDS	13699438	13699609	1	+	1	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	exon	13699438	13699609	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	intron	13699610	13699684	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	CDS	13699685	13699913	1	+	0	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	exon	13699685	13699913	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	intron	13699914	13700018	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	CDS	13700019	13700785	0.96	+	2	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	exon	13700019	13700785	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	intron	13700786	13700878	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	CDS	13700879	13701100	1	+	0	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	exon	13700879	13701100	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	intron	13701101	13701182	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	CDS	13701183	13701254	1	+	0	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	exon	13701183	13701254	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	intron	13701255	13701399	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	CDS	13701400	13701681	1	+	0	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	exon	13701400	13701681	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	intron	13701682	13701818	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	CDS	13701819	13702178	1	+	0	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	exon	13701819	13702178	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	intron	13702179	13702265	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	CDS	13702266	13702562	1	+	0	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	exon	13702266	13702562	.	+	.	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
Ledus.S2	AUGUSTUS	stop_codon	13702563	13702565	.	+	0	transcript_id "Ledus.S2G183400.t1"; gene_id "Ledus.S2G183400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12060.t1 is derived from g5679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9270800	9271678	.	-	.	Ledus.S4G121600
Ledus.S4	AUGUSTUS	transcript	9270800	9271678	.	-	.	transcript_id "Ledus.S4G121600.t1"; gene_id "Ledus.S4G121600"
Ledus.S4	AUGUSTUS	stop_codon	9270797	9270799	.	-	0	transcript_id "Ledus.S4G121600.t1"; gene_id "Ledus.S4G121600"
Ledus.S4	AUGUSTUS	CDS	9270800	9271678	0.97	-	0	transcript_id "Ledus.S4G121600.t1"; gene_id "Ledus.S4G121600"
Ledus.S4	AUGUSTUS	exon	9270800	9271678	.	-	.	transcript_id "Ledus.S4G121600.t1"; gene_id "Ledus.S4G121600"
Ledus.S4	AUGUSTUS	start_codon	9271676	9271678	.	-	0	transcript_id "Ledus.S4G121600.t1"; gene_id "Ledus.S4G121600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6197.t1 is derived from g3640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29587839	29590400	.	-	.	Ledus.S1G361800
Ledus.S1	AUGUSTUS	transcript	29587839	29590400	.	-	.	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	stop_codon	29587836	29587838	.	-	0	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	CDS	29587839	29588404	1	-	2	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	exon	29587839	29588404	.	-	.	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	intron	29588405	29588496	.	-	.	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	CDS	29588497	29588870	0.99	-	1	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	exon	29588497	29588870	.	-	.	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	intron	29588871	29588975	.	-	.	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	CDS	29588976	29589437	0.98	-	1	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	exon	29588976	29589437	.	-	.	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	intron	29589438	29589543	.	-	.	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	CDS	29589544	29589645	1	-	1	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	exon	29589544	29589645	.	-	.	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	intron	29589646	29589726	.	-	.	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	CDS	29589727	29589950	0.36	-	0	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	exon	29589727	29589950	.	-	.	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	intron	29589951	29590157	.	-	.	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	CDS	29590158	29590400	0.19	-	0	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	exon	29590158	29590400	.	-	.	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
Ledus.S1	AUGUSTUS	start_codon	29590398	29590400	.	-	0	transcript_id "Ledus.S1G361800.t1"; gene_id "Ledus.S1G361800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11159.t1 is derived from g4777.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2249267	2249774	.	-	.	Ledus.S4G031500
Ledus.S4	AUGUSTUS	transcript	2249267	2249774	.	-	.	transcript_id "Ledus.S4G031500.t1"; gene_id "Ledus.S4G031500"
Ledus.S4	AUGUSTUS	stop_codon	2249264	2249266	.	-	0	transcript_id "Ledus.S4G031500.t1"; gene_id "Ledus.S4G031500"
Ledus.S4	AUGUSTUS	CDS	2249267	2249320	0.97	-	0	transcript_id "Ledus.S4G031500.t1"; gene_id "Ledus.S4G031500"
Ledus.S4	AUGUSTUS	exon	2249267	2249320	.	-	.	transcript_id "Ledus.S4G031500.t1"; gene_id "Ledus.S4G031500"
Ledus.S4	AUGUSTUS	intron	2249321	2249396	.	-	.	transcript_id "Ledus.S4G031500.t1"; gene_id "Ledus.S4G031500"
Ledus.S4	AUGUSTUS	CDS	2249397	2249529	1	-	1	transcript_id "Ledus.S4G031500.t1"; gene_id "Ledus.S4G031500"
Ledus.S4	AUGUSTUS	exon	2249397	2249529	.	-	.	transcript_id "Ledus.S4G031500.t1"; gene_id "Ledus.S4G031500"
Ledus.S4	AUGUSTUS	intron	2249530	2249616	.	-	.	transcript_id "Ledus.S4G031500.t1"; gene_id "Ledus.S4G031500"
Ledus.S4	AUGUSTUS	CDS	2249617	2249774	0.98	-	0	transcript_id "Ledus.S4G031500.t1"; gene_id "Ledus.S4G031500"
Ledus.S4	AUGUSTUS	exon	2249617	2249774	.	-	.	transcript_id "Ledus.S4G031500.t1"; gene_id "Ledus.S4G031500"
Ledus.S4	AUGUSTUS	start_codon	2249772	2249774	.	-	0	transcript_id "Ledus.S4G031500.t1"; gene_id "Ledus.S4G031500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7946.t1 is derived from g12617.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8027385	8027684	.	+	.	Ledus.S5G072400
Ledus.S5	AUGUSTUS	transcript	8027385	8027684	.	+	.	transcript_id "Ledus.S5G072400.t1"; gene_id "Ledus.S5G072400"
Ledus.S5	AUGUSTUS	start_codon	8027385	8027387	.	+	0	transcript_id "Ledus.S5G072400.t1"; gene_id "Ledus.S5G072400"
Ledus.S5	AUGUSTUS	CDS	8027385	8027684	0.77	+	0	transcript_id "Ledus.S5G072400.t1"; gene_id "Ledus.S5G072400"
Ledus.S5	AUGUSTUS	exon	8027385	8027684	.	+	.	transcript_id "Ledus.S5G072400.t1"; gene_id "Ledus.S5G072400"
Ledus.S5	AUGUSTUS	stop_codon	8027685	8027687	.	+	0	transcript_id "Ledus.S5G072400.t1"; gene_id "Ledus.S5G072400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8157.t1 is derived from g12828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9491437	9491743	.	+	.	Ledus.S5G093500
Ledus.S5	AUGUSTUS	transcript	9491437	9491743	.	+	.	transcript_id "Ledus.S5G093500.t1"; gene_id "Ledus.S5G093500"
Ledus.S5	AUGUSTUS	start_codon	9491437	9491439	.	+	0	transcript_id "Ledus.S5G093500.t1"; gene_id "Ledus.S5G093500"
Ledus.S5	AUGUSTUS	CDS	9491437	9491516	0.56	+	0	transcript_id "Ledus.S5G093500.t1"; gene_id "Ledus.S5G093500"
Ledus.S5	AUGUSTUS	exon	9491437	9491516	.	+	.	transcript_id "Ledus.S5G093500.t1"; gene_id "Ledus.S5G093500"
Ledus.S5	AUGUSTUS	intron	9491517	9491604	.	+	.	transcript_id "Ledus.S5G093500.t1"; gene_id "Ledus.S5G093500"
Ledus.S5	AUGUSTUS	CDS	9491605	9491743	0.77	+	1	transcript_id "Ledus.S5G093500.t1"; gene_id "Ledus.S5G093500"
Ledus.S5	AUGUSTUS	exon	9491605	9491743	.	+	.	transcript_id "Ledus.S5G093500.t1"; gene_id "Ledus.S5G093500"
Ledus.S5	AUGUSTUS	stop_codon	9491744	9491746	.	+	0	transcript_id "Ledus.S5G093500.t1"; gene_id "Ledus.S5G093500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1670.t1 is derived from g8531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11786968	11789152	.	+	.	Ledus.S2G155200
Ledus.S2	AUGUSTUS	transcript	11786968	11789152	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	start_codon	11786968	11786970	.	+	0	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	CDS	11786968	11787084	0.98	+	0	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	exon	11786968	11787084	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	intron	11787085	11787171	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	CDS	11787172	11787240	1	+	0	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	exon	11787172	11787240	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	intron	11787241	11787327	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	CDS	11787328	11787458	1	+	0	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	exon	11787328	11787458	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	intron	11787459	11787536	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	CDS	11787537	11787636	1	+	1	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	exon	11787537	11787636	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	intron	11787637	11787715	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	CDS	11787716	11787783	1	+	0	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	exon	11787716	11787783	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	intron	11787784	11787907	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	CDS	11787908	11788049	1	+	1	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	exon	11787908	11788049	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	intron	11788050	11788193	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	CDS	11788194	11788310	1	+	0	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	exon	11788194	11788310	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	intron	11788311	11788436	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	CDS	11788437	11788562	1	+	0	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	exon	11788437	11788562	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	intron	11788563	11788689	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	CDS	11788690	11788773	1	+	0	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	exon	11788690	11788773	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	intron	11788774	11788877	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	CDS	11788878	11788957	1	+	0	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	exon	11788878	11788957	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	intron	11788958	11789049	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	CDS	11789050	11789152	0.56	+	1	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	exon	11789050	11789152	.	+	.	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
Ledus.S2	AUGUSTUS	stop_codon	11789153	11789155	.	+	0	transcript_id "Ledus.S2G155200.t1"; gene_id "Ledus.S2G155200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2923.t1 is derived from g358.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4595893	4596387	.	-	.	Ledus.S1G034400
Ledus.S1	AUGUSTUS	transcript	4595893	4596387	.	-	.	transcript_id "Ledus.S1G034400.t1"; gene_id "Ledus.S1G034400"
Ledus.S1	AUGUSTUS	stop_codon	4595890	4595892	.	-	0	transcript_id "Ledus.S1G034400.t1"; gene_id "Ledus.S1G034400"
Ledus.S1	AUGUSTUS	CDS	4595893	4596387	0.41	-	0	transcript_id "Ledus.S1G034400.t1"; gene_id "Ledus.S1G034400"
Ledus.S1	AUGUSTUS	exon	4595893	4596387	.	-	.	transcript_id "Ledus.S1G034400.t1"; gene_id "Ledus.S1G034400"
Ledus.S1	AUGUSTUS	start_codon	4596385	4596387	.	-	0	transcript_id "Ledus.S1G034400.t1"; gene_id "Ledus.S1G034400"
# This transcript jg5510.t2 is derived from g2949.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5510.t3 is derived from g2949.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5510.t4 is derived from g2949.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5511.t1 is derived from g2950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24715860	24716852	.	-	.	Ledus.S1G293200
Ledus.S1	AUGUSTUS	transcript	24715860	24716852	.	-	.	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	stop_codon	24715857	24715859	.	-	0	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	CDS	24715860	24715982	0.73	-	0	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	exon	24715860	24715982	.	-	.	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	intron	24715983	24716205	.	-	.	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	CDS	24716206	24716259	0.85	-	0	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	exon	24716206	24716259	.	-	.	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	intron	24716260	24716432	.	-	.	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	CDS	24716433	24716486	0.82	-	0	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	exon	24716433	24716486	.	-	.	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	intron	24716487	24716783	.	-	.	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	CDS	24716784	24716852	0.68	-	0	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	exon	24716784	24716852	.	-	.	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
Ledus.S1	AUGUSTUS	start_codon	24716850	24716852	.	-	0	transcript_id "Ledus.S1G293200.t1"; gene_id "Ledus.S1G293200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9274.t1 is derived from g10304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5740392	5746809	.	+	.	Ledus.S3G075100
Ledus.S3	AUGUSTUS	transcript	5740392	5746809	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	start_codon	5740392	5740394	.	+	0	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	CDS	5740392	5740450	1	+	0	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	exon	5740392	5740450	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	intron	5740451	5740540	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	CDS	5740541	5740732	1	+	1	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	exon	5740541	5740732	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	intron	5740733	5740821	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	CDS	5740822	5740933	1	+	1	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	exon	5740822	5740933	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	intron	5740934	5741015	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	CDS	5741016	5741058	1	+	0	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	exon	5741016	5741058	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	intron	5741059	5741233	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	CDS	5741234	5741286	1	+	2	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	exon	5741234	5741286	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	intron	5741287	5741384	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	CDS	5741385	5741437	1	+	0	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	exon	5741385	5741437	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	intron	5741438	5741531	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	CDS	5741532	5741684	1	+	1	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	exon	5741532	5741684	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	intron	5741685	5741786	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	CDS	5741787	5742136	1	+	1	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	exon	5741787	5742136	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	intron	5742137	5742295	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	CDS	5742296	5744295	1	+	2	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	exon	5742296	5744295	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	intron	5744296	5744389	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	CDS	5744390	5746415	0.56	+	0	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	exon	5744390	5746415	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	intron	5746416	5746581	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	CDS	5746582	5746668	1	+	2	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	exon	5746582	5746668	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	intron	5746669	5746744	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	CDS	5746745	5746809	0.97	+	2	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	exon	5746745	5746809	.	+	.	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
Ledus.S3	AUGUSTUS	stop_codon	5746810	5746812	.	+	0	transcript_id "Ledus.S3G075100.t1"; gene_id "Ledus.S3G075100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10070.t1 is derived from g11100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12483339	12486665	.	-	.	Ledus.S3G154700
Ledus.S3	AUGUSTUS	transcript	12483339	12486665	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	stop_codon	12483336	12483338	.	-	0	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	CDS	12483339	12483482	1	-	0	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	exon	12483339	12483482	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	intron	12483483	12483582	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	CDS	12483583	12484792	0.77	-	1	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	exon	12483583	12484792	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	intron	12484793	12485150	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	CDS	12485151	12485268	0.76	-	2	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	exon	12485151	12485268	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	intron	12485269	12485354	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	CDS	12485355	12485508	1	-	0	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	exon	12485355	12485508	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	intron	12485509	12485586	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	CDS	12485587	12485674	1	-	1	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	exon	12485587	12485674	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	intron	12485675	12485764	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	CDS	12485765	12485937	1	-	0	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	exon	12485765	12485937	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	intron	12485938	12486009	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	CDS	12486010	12486210	1	-	0	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	exon	12486010	12486210	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	intron	12486211	12486288	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	CDS	12486289	12486456	1	-	0	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	exon	12486289	12486456	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	intron	12486457	12486596	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	CDS	12486597	12486665	1	-	0	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	exon	12486597	12486665	.	-	.	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
Ledus.S3	AUGUSTUS	start_codon	12486663	12486665	.	-	0	transcript_id "Ledus.S3G154700.t1"; gene_id "Ledus.S3G154700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9858.t1 is derived from g10888.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10614346	10614846	.	-	.	Ledus.S3G133500
Ledus.S3	AUGUSTUS	transcript	10614346	10614846	.	-	.	transcript_id "Ledus.S3G133500.t1"; gene_id "Ledus.S3G133500"
Ledus.S3	AUGUSTUS	stop_codon	10614343	10614345	.	-	0	transcript_id "Ledus.S3G133500.t1"; gene_id "Ledus.S3G133500"
Ledus.S3	AUGUSTUS	CDS	10614346	10614846	0.92	-	0	transcript_id "Ledus.S3G133500.t1"; gene_id "Ledus.S3G133500"
Ledus.S3	AUGUSTUS	exon	10614346	10614846	.	-	.	transcript_id "Ledus.S3G133500.t1"; gene_id "Ledus.S3G133500"
Ledus.S3	AUGUSTUS	start_codon	10614844	10614846	.	-	0	transcript_id "Ledus.S3G133500.t1"; gene_id "Ledus.S3G133500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12851.t1 is derived from g11885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	223626	226065	.	+	.	Ledus.C11G001500
Ledus.C11	AUGUSTUS	transcript	223626	226065	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	start_codon	223626	223628	.	+	0	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	CDS	223626	223807	0.96	+	0	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	exon	223626	223807	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	intron	223808	223933	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	CDS	223934	223990	0.98	+	1	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	exon	223934	223990	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	intron	223991	224099	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	CDS	224100	224118	1	+	1	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	exon	224100	224118	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	intron	224119	224227	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	CDS	224228	224286	1	+	0	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	exon	224228	224286	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	intron	224287	224458	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	CDS	224459	224477	1	+	1	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	exon	224459	224477	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	intron	224478	224569	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	CDS	224570	224628	1	+	0	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	exon	224570	224628	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	intron	224629	224794	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	CDS	224795	224897	1	+	1	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	exon	224795	224897	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	intron	224898	225069	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	CDS	225070	225111	1	+	0	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	exon	225070	225111	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	intron	225112	225274	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	CDS	225275	225316	1	+	0	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	exon	225275	225316	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	intron	225317	225411	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	CDS	225412	225563	1	+	0	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	exon	225412	225563	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	intron	225564	225780	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	CDS	225781	225848	0.84	+	1	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	exon	225781	225848	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	intron	225849	226039	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	CDS	226040	226065	0.84	+	2	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	exon	226040	226065	.	+	.	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
Ledus.C11	AUGUSTUS	stop_codon	226066	226068	.	+	0	transcript_id "Ledus.C11G001500.t1"; gene_id "Ledus.C11G001500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6973.t1 is derived from g6504.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	501661	503190	.	-	.	Ledus.C7G003400
Ledus.C7	AUGUSTUS	transcript	501661	503190	.	-	.	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	stop_codon	501658	501660	.	-	0	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	CDS	501661	502466	1	-	2	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	exon	501661	502466	.	-	.	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	intron	502467	502545	.	-	.	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	CDS	502546	502835	0.91	-	1	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	exon	502546	502835	.	-	.	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	intron	502836	503025	.	-	.	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	CDS	503026	503078	0.84	-	0	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	exon	503026	503078	.	-	.	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	intron	503079	503181	.	-	.	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	CDS	503182	503190	0.56	-	0	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	exon	503182	503190	.	-	.	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
Ledus.C7	AUGUSTUS	start_codon	503188	503190	.	-	0	transcript_id "Ledus.C7G003400.t1"; gene_id "Ledus.C7G003400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2871.t1 is derived from g305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4298856	4300795	.	-	.	Ledus.S1G029200
Ledus.S1	AUGUSTUS	transcript	4298856	4300795	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	stop_codon	4298853	4298855	.	-	0	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	CDS	4298856	4299011	0.97	-	0	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	exon	4298856	4299011	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	intron	4299012	4299106	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	CDS	4299107	4299196	0.37	-	0	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	exon	4299107	4299196	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	intron	4299197	4299324	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	CDS	4299325	4299385	0.81	-	1	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	exon	4299325	4299385	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	intron	4299386	4299483	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	CDS	4299484	4299607	1	-	2	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	exon	4299484	4299607	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	intron	4299608	4299701	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	CDS	4299702	4299847	1	-	1	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	exon	4299702	4299847	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	intron	4299848	4299940	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	CDS	4299941	4300021	0.96	-	1	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	exon	4299941	4300021	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	intron	4300022	4300125	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	CDS	4300126	4300209	1	-	1	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	exon	4300126	4300209	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	intron	4300210	4300324	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	CDS	4300325	4300374	0.45	-	0	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	exon	4300325	4300374	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	intron	4300375	4300597	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	CDS	4300598	4300795	0.31	-	0	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	exon	4300598	4300795	.	-	.	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
Ledus.S1	AUGUSTUS	start_codon	4300793	4300795	.	-	0	transcript_id "Ledus.S1G029200.t1"; gene_id "Ledus.S1G029200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7933.t1 is derived from g12604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7922118	7922354	.	+	.	Ledus.S5G071100
Ledus.S5	AUGUSTUS	transcript	7922118	7922354	.	+	.	transcript_id "Ledus.S5G071100.t1"; gene_id "Ledus.S5G071100"
Ledus.S5	AUGUSTUS	start_codon	7922118	7922120	.	+	0	transcript_id "Ledus.S5G071100.t1"; gene_id "Ledus.S5G071100"
Ledus.S5	AUGUSTUS	CDS	7922118	7922354	0.89	+	0	transcript_id "Ledus.S5G071100.t1"; gene_id "Ledus.S5G071100"
Ledus.S5	AUGUSTUS	exon	7922118	7922354	.	+	.	transcript_id "Ledus.S5G071100.t1"; gene_id "Ledus.S5G071100"
Ledus.S5	AUGUSTUS	stop_codon	7922355	7922357	.	+	0	transcript_id "Ledus.S5G071100.t1"; gene_id "Ledus.S5G071100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1500.t1 is derived from g8361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10600484	10601182	.	+	.	Ledus.S2G138200
Ledus.S2	AUGUSTUS	transcript	10600484	10601182	.	+	.	transcript_id "Ledus.S2G138200.t1"; gene_id "Ledus.S2G138200"
Ledus.S2	AUGUSTUS	start_codon	10600484	10600486	.	+	0	transcript_id "Ledus.S2G138200.t1"; gene_id "Ledus.S2G138200"
Ledus.S2	AUGUSTUS	CDS	10600484	10601182	1	+	0	transcript_id "Ledus.S2G138200.t1"; gene_id "Ledus.S2G138200"
Ledus.S2	AUGUSTUS	exon	10600484	10601182	.	+	.	transcript_id "Ledus.S2G138200.t1"; gene_id "Ledus.S2G138200"
Ledus.S2	AUGUSTUS	stop_codon	10601183	10601185	.	+	0	transcript_id "Ledus.S2G138200.t1"; gene_id "Ledus.S2G138200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7391.t1 is derived from g12062.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2046005	2048733	.	+	.	Ledus.S5G016900
Ledus.S5	AUGUSTUS	transcript	2046005	2048733	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	start_codon	2046005	2046007	.	+	0	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	CDS	2046005	2046247	0.85	+	0	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	exon	2046005	2046247	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	intron	2046248	2046556	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	CDS	2046557	2046668	1	+	0	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	exon	2046557	2046668	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	intron	2046669	2046829	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	CDS	2046830	2047004	1	+	2	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	exon	2046830	2047004	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	intron	2047005	2047170	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	CDS	2047171	2047336	1	+	1	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	exon	2047171	2047336	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	intron	2047337	2047462	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	CDS	2047463	2047681	1	+	0	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	exon	2047463	2047681	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	intron	2047682	2047811	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	CDS	2047812	2048087	1	+	0	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	exon	2047812	2048087	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	intron	2048088	2048210	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	CDS	2048211	2048489	0.99	+	0	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	exon	2048211	2048489	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	intron	2048490	2048574	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	CDS	2048575	2048733	0.95	+	0	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	exon	2048575	2048733	.	+	.	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
Ledus.S5	AUGUSTUS	stop_codon	2048734	2048736	.	+	0	transcript_id "Ledus.S5G016900.t1"; gene_id "Ledus.S5G016900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8188.t1 is derived from g12859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9731918	9733010	.	-	.	Ledus.S5G096600
Ledus.S5	AUGUSTUS	transcript	9731918	9733010	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	stop_codon	9731915	9731917	.	-	0	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9731918	9731924	1	-	1	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9731918	9731924	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9731925	9732015	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732016	9732084	1	-	1	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732016	9732084	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9732085	9732166	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732167	9732273	1	-	0	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732167	9732273	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9732274	9732463	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732464	9732502	1	-	0	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732464	9732502	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9732503	9732588	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732589	9732704	1	-	2	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732589	9732704	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9732705	9732781	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732782	9732835	1	-	2	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732782	9732835	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9732836	9732910	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732911	9733010	1	-	0	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732911	9733010	.	-	.	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	start_codon	9733008	9733010	.	-	0	transcript_id "Ledus.S5G096600.t1"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	transcript	9731918	9733010	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	stop_codon	9731915	9731917	.	-	0	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9731918	9731924	1	-	1	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9731918	9731924	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9731925	9732015	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732016	9732084	1	-	1	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732016	9732084	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9732085	9732166	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732167	9732216	0.99	-	0	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732167	9732216	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9732217	9732331	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732332	9732379	0.8	-	0	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732332	9732379	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9732380	9732463	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732464	9732502	1	-	0	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732464	9732502	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9732503	9732588	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732589	9732704	1	-	2	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732589	9732704	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9732705	9732781	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732782	9732835	1	-	2	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732782	9732835	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	intron	9732836	9732910	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	CDS	9732911	9733010	1	-	0	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	exon	9732911	9733010	.	-	.	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
Ledus.S5	AUGUSTUS	start_codon	9733008	9733010	.	-	0	transcript_id "Ledus.S5G096600.t2"; gene_id "Ledus.S5G096600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8877.t1 is derived from g9907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2777757	2779175	.	-	.	Ledus.S3G035400
Ledus.S3	AUGUSTUS	transcript	2777757	2779175	.	-	.	transcript_id "Ledus.S3G035400.t1"; gene_id "Ledus.S3G035400"
Ledus.S3	AUGUSTUS	stop_codon	2777754	2777756	.	-	0	transcript_id "Ledus.S3G035400.t1"; gene_id "Ledus.S3G035400"
Ledus.S3	AUGUSTUS	CDS	2777757	2779175	0.75	-	0	transcript_id "Ledus.S3G035400.t1"; gene_id "Ledus.S3G035400"
Ledus.S3	AUGUSTUS	exon	2777757	2779175	.	-	.	transcript_id "Ledus.S3G035400.t1"; gene_id "Ledus.S3G035400"
Ledus.S3	AUGUSTUS	start_codon	2779173	2779175	.	-	0	transcript_id "Ledus.S3G035400.t1"; gene_id "Ledus.S3G035400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11640.t1 is derived from g5259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5707442	5708766	.	-	.	Ledus.S4G079600
Ledus.S4	AUGUSTUS	transcript	5707442	5708766	.	-	.	transcript_id "Ledus.S4G079600.t1"; gene_id "Ledus.S4G079600"
Ledus.S4	AUGUSTUS	stop_codon	5707439	5707441	.	-	0	transcript_id "Ledus.S4G079600.t1"; gene_id "Ledus.S4G079600"
Ledus.S4	AUGUSTUS	CDS	5707442	5708515	0.97	-	0	transcript_id "Ledus.S4G079600.t1"; gene_id "Ledus.S4G079600"
Ledus.S4	AUGUSTUS	exon	5707442	5708515	.	-	.	transcript_id "Ledus.S4G079600.t1"; gene_id "Ledus.S4G079600"
Ledus.S4	AUGUSTUS	intron	5708516	5708622	.	-	.	transcript_id "Ledus.S4G079600.t1"; gene_id "Ledus.S4G079600"
Ledus.S4	AUGUSTUS	CDS	5708623	5708766	1	-	0	transcript_id "Ledus.S4G079600.t1"; gene_id "Ledus.S4G079600"
Ledus.S4	AUGUSTUS	exon	5708623	5708766	.	-	.	transcript_id "Ledus.S4G079600.t1"; gene_id "Ledus.S4G079600"
Ledus.S4	AUGUSTUS	start_codon	5708764	5708766	.	-	0	transcript_id "Ledus.S4G079600.t1"; gene_id "Ledus.S4G079600"
# This transcript jg1492.t2 is derived from g8353.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1493.t1 is derived from g8354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10579668	10582550	.	-	.	Ledus.S2G137500
Ledus.S2	AUGUSTUS	transcript	10579668	10582550	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	stop_codon	10579665	10579667	.	-	0	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	CDS	10579668	10579742	0.68	-	0	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	exon	10579668	10579742	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	intron	10579743	10579809	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	CDS	10579810	10579860	0.94	-	0	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	exon	10579810	10579860	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	intron	10579861	10579947	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	CDS	10579948	10580190	1	-	0	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	exon	10579948	10580190	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	intron	10580191	10580341	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	CDS	10580342	10580665	1	-	0	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	exon	10580342	10580665	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	intron	10580666	10580828	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	CDS	10580829	10581032	1	-	0	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	exon	10580829	10581032	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	intron	10581033	10581199	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	CDS	10581200	10581694	0.98	-	0	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	exon	10581200	10581694	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	intron	10581695	10581944	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	CDS	10581945	10582550	0.64	-	0	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	exon	10581945	10582550	.	-	.	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
Ledus.S2	AUGUSTUS	start_codon	10582548	10582550	.	-	0	transcript_id "Ledus.S2G137500.t1"; gene_id "Ledus.S2G137500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2376.t1 is derived from g9239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17737769	17738513	.	+	.	Ledus.S2G225800
Ledus.S2	AUGUSTUS	transcript	17737769	17738513	.	+	.	transcript_id "Ledus.S2G225800.t1"; gene_id "Ledus.S2G225800"
Ledus.S2	AUGUSTUS	start_codon	17737769	17737771	.	+	0	transcript_id "Ledus.S2G225800.t1"; gene_id "Ledus.S2G225800"
Ledus.S2	AUGUSTUS	CDS	17737769	17737814	1	+	0	transcript_id "Ledus.S2G225800.t1"; gene_id "Ledus.S2G225800"
Ledus.S2	AUGUSTUS	exon	17737769	17737814	.	+	.	transcript_id "Ledus.S2G225800.t1"; gene_id "Ledus.S2G225800"
Ledus.S2	AUGUSTUS	intron	17737815	17738093	.	+	.	transcript_id "Ledus.S2G225800.t1"; gene_id "Ledus.S2G225800"
Ledus.S2	AUGUSTUS	CDS	17738094	17738155	0.83	+	2	transcript_id "Ledus.S2G225800.t1"; gene_id "Ledus.S2G225800"
Ledus.S2	AUGUSTUS	exon	17738094	17738155	.	+	.	transcript_id "Ledus.S2G225800.t1"; gene_id "Ledus.S2G225800"
Ledus.S2	AUGUSTUS	intron	17738156	17738267	.	+	.	transcript_id "Ledus.S2G225800.t1"; gene_id "Ledus.S2G225800"
Ledus.S2	AUGUSTUS	CDS	17738268	17738513	0.42	+	0	transcript_id "Ledus.S2G225800.t1"; gene_id "Ledus.S2G225800"
Ledus.S2	AUGUSTUS	exon	17738268	17738513	.	+	.	transcript_id "Ledus.S2G225800.t1"; gene_id "Ledus.S2G225800"
Ledus.S2	AUGUSTUS	stop_codon	17738514	17738516	.	+	0	transcript_id "Ledus.S2G225800.t1"; gene_id "Ledus.S2G225800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3177.t1 is derived from g612.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6588257	6591059	.	-	.	Ledus.S1G059800
Ledus.S1	AUGUSTUS	transcript	6588257	6591059	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	stop_codon	6588254	6588256	.	-	0	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6588257	6588273	0.99	-	2	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6588257	6588273	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	intron	6588274	6588367	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6588368	6588400	0.79	-	2	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6588368	6588400	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	intron	6588401	6588547	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6588548	6588635	0.99	-	0	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6588548	6588635	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	intron	6588636	6588721	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6588722	6588862	1	-	0	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6588722	6588862	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	intron	6588863	6588974	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6588975	6589052	1	-	0	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6588975	6589052	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	intron	6589053	6589149	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6589150	6589326	1	-	0	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6589150	6589326	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	intron	6589327	6589460	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6589461	6589616	0.43	-	0	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6589461	6589616	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	intron	6589617	6589727	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6589728	6589850	0.43	-	0	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6589728	6589850	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	intron	6589851	6589992	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6589993	6590062	1	-	1	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6589993	6590062	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	intron	6590063	6590184	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6590185	6590411	1	-	0	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6590185	6590411	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	intron	6590412	6590538	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6590539	6590617	1	-	1	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6590539	6590617	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	intron	6590618	6590755	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6590756	6590891	1	-	2	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6590756	6590891	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	intron	6590892	6590986	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	CDS	6590987	6591059	0.76	-	0	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	exon	6590987	6591059	.	-	.	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
Ledus.S1	AUGUSTUS	start_codon	6591057	6591059	.	-	0	transcript_id "Ledus.S1G059800.t1"; gene_id "Ledus.S1G059800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2335.t1 is derived from g9198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17229992	17231022	.	-	.	Ledus.S2G221700
Ledus.S2	AUGUSTUS	transcript	17229992	17231022	.	-	.	transcript_id "Ledus.S2G221700.t1"; gene_id "Ledus.S2G221700"
Ledus.S2	AUGUSTUS	stop_codon	17229989	17229991	.	-	0	transcript_id "Ledus.S2G221700.t1"; gene_id "Ledus.S2G221700"
Ledus.S2	AUGUSTUS	CDS	17229992	17230358	1	-	1	transcript_id "Ledus.S2G221700.t1"; gene_id "Ledus.S2G221700"
Ledus.S2	AUGUSTUS	exon	17229992	17230358	.	-	.	transcript_id "Ledus.S2G221700.t1"; gene_id "Ledus.S2G221700"
Ledus.S2	AUGUSTUS	intron	17230359	17230457	.	-	.	transcript_id "Ledus.S2G221700.t1"; gene_id "Ledus.S2G221700"
Ledus.S2	AUGUSTUS	CDS	17230458	17230858	1	-	0	transcript_id "Ledus.S2G221700.t1"; gene_id "Ledus.S2G221700"
Ledus.S2	AUGUSTUS	exon	17230458	17230858	.	-	.	transcript_id "Ledus.S2G221700.t1"; gene_id "Ledus.S2G221700"
Ledus.S2	AUGUSTUS	intron	17230859	17230929	.	-	.	transcript_id "Ledus.S2G221700.t1"; gene_id "Ledus.S2G221700"
Ledus.S2	AUGUSTUS	CDS	17230930	17231022	0.93	-	0	transcript_id "Ledus.S2G221700.t1"; gene_id "Ledus.S2G221700"
Ledus.S2	AUGUSTUS	exon	17230930	17231022	.	-	.	transcript_id "Ledus.S2G221700.t1"; gene_id "Ledus.S2G221700"
Ledus.S2	AUGUSTUS	start_codon	17231020	17231022	.	-	0	transcript_id "Ledus.S2G221700.t1"; gene_id "Ledus.S2G221700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6755.t1 is derived from g4198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33779612	33781893	.	+	.	Ledus.S1G417600
Ledus.S1	AUGUSTUS	transcript	33779612	33781893	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	start_codon	33779612	33779614	.	+	0	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	CDS	33779612	33779627	0.74	+	0	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	exon	33779612	33779627	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	intron	33779628	33779706	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	CDS	33779707	33780249	0.96	+	2	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	exon	33779707	33780249	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	intron	33780250	33780334	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	CDS	33780335	33780615	1	+	2	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	exon	33780335	33780615	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	intron	33780616	33780688	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	CDS	33780689	33780815	1	+	0	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	exon	33780689	33780815	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	intron	33780816	33780893	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	CDS	33780894	33780962	1	+	2	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	exon	33780894	33780962	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	intron	33780963	33781048	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	CDS	33781049	33781238	1	+	2	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	exon	33781049	33781238	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	intron	33781239	33781334	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	CDS	33781335	33781467	0.53	+	1	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	exon	33781335	33781467	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	intron	33781468	33781572	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	CDS	33781573	33781893	1	+	0	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	exon	33781573	33781893	.	+	.	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
Ledus.S1	AUGUSTUS	stop_codon	33781894	33781896	.	+	0	transcript_id "Ledus.S1G417600.t1"; gene_id "Ledus.S1G417600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4207.t1 is derived from g1643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15409869	15415959	.	+	.	Ledus.S1G162800
Ledus.S1	AUGUSTUS	transcript	15409869	15415959	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	start_codon	15409869	15409871	.	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15409869	15410072	0.9	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15409869	15410072	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15410073	15410199	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15410200	15410379	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15410200	15410379	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15410380	15410472	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15410473	15410538	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15410473	15410538	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15410539	15410632	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15410633	15410725	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15410633	15410725	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15410726	15411017	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15411018	15411149	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15411018	15411149	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15411150	15411245	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15411246	15411347	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15411246	15411347	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15411348	15411683	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15411684	15411761	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15411684	15411761	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15411762	15411880	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15411881	15411952	0.96	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15411881	15411952	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15411953	15412197	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15412198	15412305	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15412198	15412305	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15412306	15412413	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15412414	15412511	0.61	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15412414	15412511	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15412512	15412665	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15412666	15412726	1	+	1	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15412666	15412726	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15412727	15412833	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15412834	15412896	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15412834	15412896	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15412897	15413102	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15413103	15413159	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15413103	15413159	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15413160	15413320	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15413321	15413422	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15413321	15413422	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15413423	15413507	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15413508	15413714	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15413508	15413714	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15413715	15413863	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15413864	15413995	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15413864	15413995	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15413996	15414095	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15414096	15414182	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15414096	15414182	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15414183	15414288	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15414289	15414360	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15414289	15414360	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15414361	15414502	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15414503	15414589	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15414503	15414589	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15414590	15414672	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15414673	15415183	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15414673	15415183	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15415184	15415276	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15415277	15415338	1	+	2	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15415277	15415338	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15415339	15415434	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15415435	15415503	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15415435	15415503	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15415504	15415615	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15415616	15415662	1	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15415616	15415662	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15415663	15415838	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15415839	15415959	0.96	+	1	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15415839	15415959	.	+	.	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	stop_codon	15415960	15415962	.	+	0	transcript_id "Ledus.S1G162800.t1"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	transcript	15409869	15415889	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	start_codon	15409869	15409871	.	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15409869	15410072	0.95	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15409869	15410072	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15410073	15410199	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15410200	15410379	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15410200	15410379	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15410380	15410472	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15410473	15410538	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15410473	15410538	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15410539	15410632	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15410633	15410725	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15410633	15410725	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15410726	15411017	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15411018	15411149	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15411018	15411149	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15411150	15411245	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15411246	15411347	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15411246	15411347	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15411348	15411683	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15411684	15411761	0.97	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15411684	15411761	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15411762	15411880	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15411881	15411952	0.94	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15411881	15411952	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15411953	15412197	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15412198	15412305	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15412198	15412305	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15412306	15412413	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15412414	15412511	0.62	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15412414	15412511	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15412512	15412665	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15412666	15412726	0.99	+	1	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15412666	15412726	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15412727	15412833	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15412834	15412896	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15412834	15412896	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15412897	15413102	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15413103	15413159	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15413103	15413159	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15413160	15413320	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15413321	15413422	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15413321	15413422	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15413423	15413507	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15413508	15413714	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15413508	15413714	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15413715	15413863	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15413864	15413995	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15413864	15413995	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15413996	15414095	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15414096	15414182	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15414096	15414182	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15414183	15414288	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15414289	15414360	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15414289	15414360	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15414361	15414502	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15414503	15414589	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15414503	15414589	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15414590	15414672	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15414673	15415183	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15414673	15415183	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15415184	15415276	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15415277	15415338	1	+	2	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15415277	15415338	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15415339	15415434	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15415435	15415503	1	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15415435	15415503	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15415504	15415619	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15415620	15415649	0.42	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15415620	15415649	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	intron	15415650	15415838	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	CDS	15415839	15415889	0.42	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	exon	15415839	15415889	.	+	.	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
Ledus.S1	AUGUSTUS	stop_codon	15415890	15415892	.	+	0	transcript_id "Ledus.S1G162800.t2"; gene_id "Ledus.S1G162800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10384.t1 is derived from g11414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14620474	14623717	.	-	.	Ledus.S3G186100
Ledus.S3	AUGUSTUS	transcript	14620474	14623717	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	stop_codon	14620471	14620473	.	-	0	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14620474	14620590	0.99	-	0	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14620474	14620590	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14620591	14620681	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14620682	14620802	1	-	1	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14620682	14620802	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14620803	14620891	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14620892	14621019	1	-	0	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14620892	14621019	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14621020	14621111	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14621112	14621258	1	-	0	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14621112	14621258	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14621259	14621356	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14621357	14621479	1	-	0	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14621357	14621479	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14621480	14621575	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14621576	14621751	1	-	2	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14621576	14621751	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14621752	14621848	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14621849	14621935	1	-	2	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14621849	14621935	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14621936	14622073	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14622074	14622268	1	-	2	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14622074	14622268	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14622269	14622360	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14622361	14622441	1	-	2	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14622361	14622441	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14622442	14622587	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14622588	14622668	1	-	2	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14622588	14622668	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14622669	14622782	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14622783	14623043	1	-	2	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14622783	14623043	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14623044	14623158	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14623159	14623245	1	-	2	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14623159	14623245	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14623246	14623334	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14623335	14623552	1	-	1	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14623335	14623552	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	intron	14623553	14623712	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	CDS	14623713	14623717	1	-	0	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	exon	14623713	14623717	.	-	.	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
Ledus.S3	AUGUSTUS	start_codon	14623715	14623717	.	-	0	transcript_id "Ledus.S3G186100.t1"; gene_id "Ledus.S3G186100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9449.t1 is derived from g10479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7047747	7048920	.	-	.	Ledus.S3G092600
Ledus.S3	AUGUSTUS	transcript	7047747	7048920	.	-	.	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	stop_codon	7047744	7047746	.	-	0	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	CDS	7047747	7047781	0.97	-	2	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	exon	7047747	7047781	.	-	.	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	intron	7047782	7047865	.	-	.	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	CDS	7047866	7047894	0.97	-	1	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	exon	7047866	7047894	.	-	.	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	intron	7047895	7047955	.	-	.	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	CDS	7047956	7048133	1	-	2	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	exon	7047956	7048133	.	-	.	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	intron	7048134	7048218	.	-	.	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	CDS	7048219	7048356	1	-	2	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	exon	7048219	7048356	.	-	.	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	intron	7048357	7048442	.	-	.	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	CDS	7048443	7048920	0.94	-	0	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	exon	7048443	7048920	.	-	.	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
Ledus.S3	AUGUSTUS	start_codon	7048918	7048920	.	-	0	transcript_id "Ledus.S3G092600.t1"; gene_id "Ledus.S3G092600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10522.t1 is derived from g11552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15831916	15832215	.	+	.	Ledus.S3G199900
Ledus.S3	AUGUSTUS	transcript	15831916	15832215	.	+	.	transcript_id "Ledus.S3G199900.t1"; gene_id "Ledus.S3G199900"
Ledus.S3	AUGUSTUS	start_codon	15831916	15831918	.	+	0	transcript_id "Ledus.S3G199900.t1"; gene_id "Ledus.S3G199900"
Ledus.S3	AUGUSTUS	CDS	15831916	15832215	0.66	+	0	transcript_id "Ledus.S3G199900.t1"; gene_id "Ledus.S3G199900"
Ledus.S3	AUGUSTUS	exon	15831916	15832215	.	+	.	transcript_id "Ledus.S3G199900.t1"; gene_id "Ledus.S3G199900"
Ledus.S3	AUGUSTUS	stop_codon	15832216	15832218	.	+	0	transcript_id "Ledus.S3G199900.t1"; gene_id "Ledus.S3G199900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8073.t1 is derived from g12744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9045796	9047478	.	+	.	Ledus.S5G085100
Ledus.S5	AUGUSTUS	transcript	9045796	9047478	.	+	.	transcript_id "Ledus.S5G085100.t1"; gene_id "Ledus.S5G085100"
Ledus.S5	AUGUSTUS	start_codon	9045796	9045798	.	+	0	transcript_id "Ledus.S5G085100.t1"; gene_id "Ledus.S5G085100"
Ledus.S5	AUGUSTUS	CDS	9045796	9047478	0.51	+	0	transcript_id "Ledus.S5G085100.t1"; gene_id "Ledus.S5G085100"
Ledus.S5	AUGUSTUS	exon	9045796	9047478	.	+	.	transcript_id "Ledus.S5G085100.t1"; gene_id "Ledus.S5G085100"
Ledus.S5	AUGUSTUS	stop_codon	9047479	9047481	.	+	0	transcript_id "Ledus.S5G085100.t1"; gene_id "Ledus.S5G085100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8415.t1 is derived from g13087.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11538323	11545519	.	+	.	Ledus.S5G119300
Ledus.S5	AUGUSTUS	transcript	11538323	11545519	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	start_codon	11538323	11538325	.	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11538323	11538440	0.92	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11538323	11538440	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11538441	11538588	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11538589	11538694	0.79	+	2	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11538589	11538694	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11538695	11538767	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11538768	11539044	0.65	+	1	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11538768	11539044	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11539045	11539132	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11539133	11539304	0.84	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11539133	11539304	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11539305	11539451	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11539452	11539702	0.63	+	2	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11539452	11539702	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11539703	11539828	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11539829	11539871	0.8	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11539829	11539871	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11539872	11539981	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11539982	11540118	0.6	+	2	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11539982	11540118	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11540119	11540241	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11540242	11540294	0.99	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11540242	11540294	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11540295	11540413	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11540414	11540483	0.98	+	1	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11540414	11540483	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11540484	11540582	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11540583	11540613	0.58	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11540583	11540613	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11540614	11540750	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11540751	11540947	0.79	+	2	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11540751	11540947	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11540948	11541094	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11541095	11541150	1	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11541095	11541150	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11541151	11541315	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11541316	11541391	0.53	+	1	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11541316	11541391	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11541392	11541523	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11541524	11541590	1	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11541524	11541590	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11541591	11541679	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11541680	11541746	1	+	2	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11541680	11541746	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11541747	11541872	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11541873	11541976	0.41	+	1	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11541873	11541976	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11541977	11542052	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11542053	11542300	0.29	+	2	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11542053	11542300	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11542301	11542383	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11542384	11542539	1	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11542384	11542539	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11542540	11542780	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11542781	11542858	1	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11542781	11542858	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11542859	11543087	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11543088	11543203	0.7	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11543088	11543203	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11543204	11543296	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11543297	11543301	0.69	+	1	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11543297	11543301	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11543302	11543449	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11543450	11543462	0.9	+	2	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11543450	11543462	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11543463	11543529	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11543530	11543578	0.91	+	1	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11543530	11543578	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11543579	11543848	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11543849	11543905	1	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11543849	11543905	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11543906	11544002	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11544003	11544092	1	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11544003	11544092	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11544093	11544173	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11544174	11544239	1	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11544174	11544239	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11544240	11544337	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11544338	11544406	1	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11544338	11544406	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11544407	11544479	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11544480	11544584	0.94	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11544480	11544584	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11544585	11544689	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11544690	11544815	1	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11544690	11544815	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11544816	11544947	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11544948	11545006	1	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11544948	11545006	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11545007	11545271	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11545272	11545308	1	+	1	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11545272	11545308	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	intron	11545309	11545378	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	CDS	11545379	11545519	0.92	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	exon	11545379	11545519	.	+	.	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
Ledus.S5	AUGUSTUS	stop_codon	11545520	11545522	.	+	0	transcript_id "Ledus.S5G119300.t1"; gene_id "Ledus.S5G119300"
# This transcript jg12233.t2 is derived from g5853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12234.t1 is derived from g5854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10541090	10546820	.	+	.	Ledus.S4G139000
Ledus.S4	AUGUSTUS	transcript	10541090	10546820	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	start_codon	10541090	10541092	.	+	0	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10541090	10541189	0.98	+	0	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10541090	10541189	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10541190	10541410	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10541411	10542098	0.97	+	2	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10541411	10542098	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10542099	10542268	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10542269	10542350	1	+	1	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10542269	10542350	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10542351	10542443	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10542444	10542531	1	+	0	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10542444	10542531	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10542532	10542716	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10542717	10542907	1	+	2	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10542717	10542907	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10542908	10543097	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10543098	10543230	1	+	0	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10543098	10543230	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10543231	10543365	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10543366	10543505	1	+	2	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10543366	10543505	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10543506	10543653	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10543654	10543728	1	+	0	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10543654	10543728	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10543729	10543807	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10543808	10543924	0.72	+	0	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10543808	10543924	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10543925	10544040	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10544041	10544625	0.66	+	0	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10544041	10544625	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10544626	10545381	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10545382	10545427	0.46	+	0	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10545382	10545427	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10545428	10545514	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10545515	10545601	0.46	+	2	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10545515	10545601	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10545602	10545687	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10545688	10545825	1	+	2	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10545688	10545825	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10545826	10545919	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10545920	10545986	1	+	2	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10545920	10545986	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10545987	10546194	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10546195	10546298	0.7	+	1	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10546195	10546298	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10546299	10546412	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10546413	10546604	0.88	+	2	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10546413	10546604	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	intron	10546605	10546725	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	CDS	10546726	10546820	0.65	+	2	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	exon	10546726	10546820	.	+	.	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
Ledus.S4	AUGUSTUS	stop_codon	10546821	10546823	.	+	0	transcript_id "Ledus.S4G139000.t1"; gene_id "Ledus.S4G139000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7278.t1 is derived from g11949.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	717793	720934	.	+	.	Ledus.S5G005600
Ledus.S5	AUGUSTUS	transcript	717793	720934	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	start_codon	717793	717795	.	+	0	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	CDS	717793	717990	0.93	+	0	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	exon	717793	717990	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	intron	717991	718062	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	CDS	718063	718593	0.94	+	0	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	exon	718063	718593	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	intron	718594	718671	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	CDS	718672	718776	0.78	+	0	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	exon	718672	718776	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	intron	718777	718884	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	CDS	718885	719078	0.94	+	0	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	exon	718885	719078	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	intron	719079	719188	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	CDS	719189	719339	1	+	1	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	exon	719189	719339	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	intron	719340	719438	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	CDS	719439	719570	0.95	+	0	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	exon	719439	719570	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	intron	719571	719685	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	CDS	719686	719816	1	+	0	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	exon	719686	719816	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	intron	719817	719890	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	CDS	719891	720107	1	+	1	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	exon	719891	720107	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	intron	720108	720191	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	CDS	720192	720535	1	+	0	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	exon	720192	720535	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	intron	720536	720626	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	CDS	720627	720690	1	+	1	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	exon	720627	720690	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	intron	720691	720784	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	CDS	720785	720934	1	+	0	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	exon	720785	720934	.	+	.	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
Ledus.S5	AUGUSTUS	stop_codon	720935	720937	.	+	0	transcript_id "Ledus.S5G005600.t1"; gene_id "Ledus.S5G005600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1891.t1 is derived from g8754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13197524	13199381	.	-	.	Ledus.S2G177300
Ledus.S2	AUGUSTUS	transcript	13197524	13199381	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	stop_codon	13197521	13197523	.	-	0	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	CDS	13197524	13197769	1	-	0	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	exon	13197524	13197769	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	intron	13197770	13197875	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	CDS	13197876	13198037	0.99	-	0	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	exon	13197876	13198037	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	intron	13198038	13198120	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	CDS	13198121	13198180	1	-	0	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	exon	13198121	13198180	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	intron	13198181	13198324	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	CDS	13198325	13198365	0.99	-	2	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	exon	13198325	13198365	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	intron	13198366	13198458	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	CDS	13198459	13198589	0.99	-	1	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	exon	13198459	13198589	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	intron	13198590	13198808	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	CDS	13198809	13198933	1	-	0	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	exon	13198809	13198933	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	intron	13198934	13199044	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	CDS	13199045	13199152	1	-	0	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	exon	13199045	13199152	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	intron	13199153	13199282	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	CDS	13199283	13199381	0.98	-	0	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	exon	13199283	13199381	.	-	.	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
Ledus.S2	AUGUSTUS	start_codon	13199379	13199381	.	-	0	transcript_id "Ledus.S2G177300.t1"; gene_id "Ledus.S2G177300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1287.t1 is derived from g8148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9080831	9087657	.	+	.	Ledus.S2G116900
Ledus.S2	AUGUSTUS	transcript	9080831	9087657	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	start_codon	9080831	9080833	.	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9080831	9080878	0.92	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9080831	9080878	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9080879	9080968	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9080969	9081634	0.99	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9080969	9081634	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9081635	9081759	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9081760	9081971	1	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9081760	9081971	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9081972	9082067	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9082068	9082196	1	+	1	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9082068	9082196	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9082197	9082341	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9082342	9082476	1	+	1	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9082342	9082476	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9082477	9082608	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9082609	9082727	1	+	1	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9082609	9082727	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9082728	9082909	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9082910	9083230	0.93	+	2	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9082910	9083230	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9083231	9083447	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9083448	9083535	1	+	2	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9083448	9083535	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9083536	9083669	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9083670	9083775	0.84	+	1	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9083670	9083775	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9083776	9083891	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9083892	9084005	0.95	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9083892	9084005	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9084006	9084130	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9084131	9084294	1	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9084131	9084294	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9084295	9084438	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9084439	9084556	1	+	1	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9084439	9084556	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9084557	9084677	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9084678	9084902	1	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9084678	9084902	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9084903	9085002	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9085003	9085193	0.99	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9085003	9085193	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9085194	9085299	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9085300	9085467	0.99	+	1	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9085300	9085467	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9085468	9085575	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9085576	9085681	1	+	1	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9085576	9085681	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9085682	9085774	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9085775	9085912	1	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9085775	9085912	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9085913	9086011	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9086012	9086176	0.92	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9086012	9086176	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9086177	9086282	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9086283	9086495	0.99	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9086283	9086495	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9086496	9086616	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9086617	9086701	0.64	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9086617	9086701	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9086702	9086779	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9086780	9086814	0.71	+	2	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9086780	9086814	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9086815	9087026	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9087027	9087119	1	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9087027	9087119	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9087120	9087300	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9087301	9087372	1	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9087301	9087372	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	intron	9087373	9087510	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	CDS	9087511	9087657	1	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	exon	9087511	9087657	.	+	.	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
Ledus.S2	AUGUSTUS	stop_codon	9087658	9087660	.	+	0	transcript_id "Ledus.S2G116900.t1"; gene_id "Ledus.S2G116900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11484.t1 is derived from g5102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4879152	4880380	.	-	.	Ledus.S4G064000
Ledus.S4	AUGUSTUS	transcript	4879152	4880380	.	-	.	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	stop_codon	4879149	4879151	.	-	0	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	CDS	4879152	4879273	0.99	-	2	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	exon	4879152	4879273	.	-	.	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	intron	4879274	4879373	.	-	.	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	CDS	4879374	4879452	1	-	0	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	exon	4879374	4879452	.	-	.	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	intron	4879453	4879679	.	-	.	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	CDS	4879680	4879756	1	-	2	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	exon	4879680	4879756	.	-	.	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	intron	4879757	4879845	.	-	.	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	CDS	4879846	4880380	0.99	-	0	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	exon	4879846	4880380	.	-	.	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
Ledus.S4	AUGUSTUS	start_codon	4880378	4880380	.	-	0	transcript_id "Ledus.S4G064000.t1"; gene_id "Ledus.S4G064000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3618.t1 is derived from g1054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10231781	10232977	.	+	.	Ledus.S1G103900
Ledus.S1	AUGUSTUS	transcript	10231781	10232977	.	+	.	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	start_codon	10231781	10231783	.	+	0	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	CDS	10231781	10231825	0.52	+	0	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	exon	10231781	10231825	.	+	.	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	intron	10231826	10232111	.	+	.	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	CDS	10232112	10232185	0.66	+	0	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	exon	10232112	10232185	.	+	.	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	intron	10232186	10232285	.	+	.	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	CDS	10232286	10232311	0.75	+	1	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	exon	10232286	10232311	.	+	.	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	intron	10232312	10232386	.	+	.	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	CDS	10232387	10232469	0.81	+	2	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	exon	10232387	10232469	.	+	.	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	intron	10232470	10232719	.	+	.	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	CDS	10232720	10232977	0.51	+	0	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	exon	10232720	10232977	.	+	.	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
Ledus.S1	AUGUSTUS	stop_codon	10232978	10232980	.	+	0	transcript_id "Ledus.S1G103900.t1"; gene_id "Ledus.S1G103900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9414.t1 is derived from g10444.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6601908	6602631	.	-	.	Ledus.S3G089100
Ledus.S3	AUGUSTUS	transcript	6601908	6602631	.	-	.	transcript_id "Ledus.S3G089100.t1"; gene_id "Ledus.S3G089100"
Ledus.S3	AUGUSTUS	stop_codon	6601905	6601907	.	-	0	transcript_id "Ledus.S3G089100.t1"; gene_id "Ledus.S3G089100"
Ledus.S3	AUGUSTUS	CDS	6601908	6601916	1	-	0	transcript_id "Ledus.S3G089100.t1"; gene_id "Ledus.S3G089100"
Ledus.S3	AUGUSTUS	exon	6601908	6601916	.	-	.	transcript_id "Ledus.S3G089100.t1"; gene_id "Ledus.S3G089100"
Ledus.S3	AUGUSTUS	intron	6601917	6602433	.	-	.	transcript_id "Ledus.S3G089100.t1"; gene_id "Ledus.S3G089100"
Ledus.S3	AUGUSTUS	CDS	6602434	6602631	0.68	-	0	transcript_id "Ledus.S3G089100.t1"; gene_id "Ledus.S3G089100"
Ledus.S3	AUGUSTUS	exon	6602434	6602631	.	-	.	transcript_id "Ledus.S3G089100.t1"; gene_id "Ledus.S3G089100"
Ledus.S3	AUGUSTUS	start_codon	6602629	6602631	.	-	0	transcript_id "Ledus.S3G089100.t1"; gene_id "Ledus.S3G089100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3545.t1 is derived from g981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9377881	9379963	.	+	.	Ledus.S1G096600
Ledus.S1	AUGUSTUS	transcript	9377881	9379963	.	+	.	transcript_id "Ledus.S1G096600.t1"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	start_codon	9377881	9377883	.	+	0	transcript_id "Ledus.S1G096600.t1"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	CDS	9377881	9378145	0.88	+	0	transcript_id "Ledus.S1G096600.t1"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	exon	9377881	9378145	.	+	.	transcript_id "Ledus.S1G096600.t1"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	intron	9378146	9378378	.	+	.	transcript_id "Ledus.S1G096600.t1"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	CDS	9378379	9378414	0.96	+	2	transcript_id "Ledus.S1G096600.t1"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	exon	9378379	9378414	.	+	.	transcript_id "Ledus.S1G096600.t1"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	intron	9378415	9378548	.	+	.	transcript_id "Ledus.S1G096600.t1"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	CDS	9378549	9379963	0.96	+	2	transcript_id "Ledus.S1G096600.t1"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	exon	9378549	9379963	.	+	.	transcript_id "Ledus.S1G096600.t1"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	stop_codon	9379964	9379966	.	+	0	transcript_id "Ledus.S1G096600.t1"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	transcript	9378293	9379963	.	+	.	transcript_id "Ledus.S1G096600.t2"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	start_codon	9378293	9378295	.	+	0	transcript_id "Ledus.S1G096600.t2"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	CDS	9378293	9378414	0.33	+	0	transcript_id "Ledus.S1G096600.t2"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	exon	9378293	9378414	.	+	.	transcript_id "Ledus.S1G096600.t2"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	intron	9378415	9378570	.	+	.	transcript_id "Ledus.S1G096600.t2"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	CDS	9378571	9379963	0.48	+	1	transcript_id "Ledus.S1G096600.t2"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	exon	9378571	9379963	.	+	.	transcript_id "Ledus.S1G096600.t2"; gene_id "Ledus.S1G096600"
Ledus.S1	AUGUSTUS	stop_codon	9379964	9379966	.	+	0	transcript_id "Ledus.S1G096600.t2"; gene_id "Ledus.S1G096600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg320.t1 is derived from g7181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1659571	1661273	.	+	.	Ledus.S2G020200
Ledus.S2	AUGUSTUS	transcript	1659571	1661273	.	+	.	transcript_id "Ledus.S2G020200.t1"; gene_id "Ledus.S2G020200"
Ledus.S2	AUGUSTUS	start_codon	1659571	1659573	.	+	0	transcript_id "Ledus.S2G020200.t1"; gene_id "Ledus.S2G020200"
Ledus.S2	AUGUSTUS	CDS	1659571	1660296	0.39	+	0	transcript_id "Ledus.S2G020200.t1"; gene_id "Ledus.S2G020200"
Ledus.S2	AUGUSTUS	exon	1659571	1660296	.	+	.	transcript_id "Ledus.S2G020200.t1"; gene_id "Ledus.S2G020200"
Ledus.S2	AUGUSTUS	intron	1660297	1660382	.	+	.	transcript_id "Ledus.S2G020200.t1"; gene_id "Ledus.S2G020200"
Ledus.S2	AUGUSTUS	CDS	1660383	1661273	0.75	+	0	transcript_id "Ledus.S2G020200.t1"; gene_id "Ledus.S2G020200"
Ledus.S2	AUGUSTUS	exon	1660383	1661273	.	+	.	transcript_id "Ledus.S2G020200.t1"; gene_id "Ledus.S2G020200"
Ledus.S2	AUGUSTUS	stop_codon	1661274	1661276	.	+	0	transcript_id "Ledus.S2G020200.t1"; gene_id "Ledus.S2G020200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9814.t1 is derived from g10844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10085283	10088319	.	-	.	Ledus.S3G129100
Ledus.S3	AUGUSTUS	transcript	10085283	10088319	.	-	.	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	stop_codon	10085280	10085282	.	-	0	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	CDS	10085283	10085333	0.92	-	0	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	exon	10085283	10085333	.	-	.	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	intron	10085334	10085723	.	-	.	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	CDS	10085724	10086554	1	-	0	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	exon	10085724	10086554	.	-	.	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	intron	10086555	10086673	.	-	.	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	CDS	10086674	10086759	1	-	2	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	exon	10086674	10086759	.	-	.	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	intron	10086760	10086894	.	-	.	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	CDS	10086895	10087377	0.6	-	2	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	exon	10086895	10087377	.	-	.	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	intron	10087378	10087666	.	-	.	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	CDS	10087667	10087891	1	-	2	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	exon	10087667	10087891	.	-	.	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	intron	10087892	10088009	.	-	.	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	CDS	10088010	10088319	0.6	-	0	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	exon	10088010	10088319	.	-	.	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
Ledus.S3	AUGUSTUS	start_codon	10088317	10088319	.	-	0	transcript_id "Ledus.S3G129100.t1"; gene_id "Ledus.S3G129100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3913.t1 is derived from g1349.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13537740	13539184	.	-	.	Ledus.S1G133400
Ledus.S1	AUGUSTUS	transcript	13537740	13539184	.	-	.	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	stop_codon	13537737	13537739	.	-	0	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	CDS	13537740	13538189	0.99	-	0	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	exon	13537740	13538189	.	-	.	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	intron	13538190	13538311	.	-	.	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	CDS	13538312	13538706	0.99	-	2	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	exon	13538312	13538706	.	-	.	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	intron	13538707	13538822	.	-	.	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	CDS	13538823	13538970	0.82	-	0	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	exon	13538823	13538970	.	-	.	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	intron	13538971	13539064	.	-	.	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	CDS	13539065	13539184	0.64	-	0	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	exon	13539065	13539184	.	-	.	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
Ledus.S1	AUGUSTUS	start_codon	13539182	13539184	.	-	0	transcript_id "Ledus.S1G133400.t1"; gene_id "Ledus.S1G133400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7693.t1 is derived from g12364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5227218	5228621	.	-	.	Ledus.S5G047100
Ledus.S5	AUGUSTUS	transcript	5227218	5228621	.	-	.	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	stop_codon	5227215	5227217	.	-	0	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	CDS	5227218	5227438	0.93	-	2	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	exon	5227218	5227438	.	-	.	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	intron	5227439	5227521	.	-	.	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	CDS	5227522	5227774	1	-	0	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	exon	5227522	5227774	.	-	.	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	intron	5227775	5227854	.	-	.	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	CDS	5227855	5228094	1	-	0	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	exon	5227855	5228094	.	-	.	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	intron	5228095	5228170	.	-	.	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	CDS	5228171	5228298	1	-	2	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	exon	5228171	5228298	.	-	.	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	intron	5228299	5228377	.	-	.	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	CDS	5228378	5228621	0.77	-	0	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	exon	5228378	5228621	.	-	.	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
Ledus.S5	AUGUSTUS	start_codon	5228619	5228621	.	-	0	transcript_id "Ledus.S5G047100.t1"; gene_id "Ledus.S5G047100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12399.t1 is derived from g6020.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11658478	11661153	.	+	.	Ledus.S4G155500
Ledus.S4	AUGUSTUS	transcript	11658478	11661153	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	start_codon	11658478	11658480	.	+	0	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	CDS	11658478	11658701	0.9	+	0	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	exon	11658478	11658701	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	intron	11658702	11658780	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	CDS	11658781	11658855	0.92	+	1	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	exon	11658781	11658855	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	intron	11658856	11658945	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	CDS	11658946	11659250	0.92	+	1	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	exon	11658946	11659250	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	intron	11659251	11659335	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	CDS	11659336	11659533	1	+	2	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	exon	11659336	11659533	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	intron	11659534	11659628	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	CDS	11659629	11659810	1	+	2	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	exon	11659629	11659810	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	intron	11659811	11659894	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	CDS	11659895	11660052	1	+	0	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	exon	11659895	11660052	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	intron	11660053	11660135	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	CDS	11660136	11660409	0.99	+	1	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	exon	11660136	11660409	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	intron	11660410	11660515	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	CDS	11660516	11660827	1	+	0	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	exon	11660516	11660827	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	intron	11660828	11660907	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	CDS	11660908	11661153	0.99	+	0	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	exon	11660908	11661153	.	+	.	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
Ledus.S4	AUGUSTUS	stop_codon	11661154	11661156	.	+	0	transcript_id "Ledus.S4G155500.t1"; gene_id "Ledus.S4G155500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12631.t1 is derived from g6253.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13410597	13411737	.	+	.	Ledus.S4G178700
Ledus.S4	AUGUSTUS	transcript	13410597	13411737	.	+	.	transcript_id "Ledus.S4G178700.t1"; gene_id "Ledus.S4G178700"
Ledus.S4	AUGUSTUS	start_codon	13410597	13410599	.	+	0	transcript_id "Ledus.S4G178700.t1"; gene_id "Ledus.S4G178700"
Ledus.S4	AUGUSTUS	CDS	13410597	13410733	0.6	+	0	transcript_id "Ledus.S4G178700.t1"; gene_id "Ledus.S4G178700"
Ledus.S4	AUGUSTUS	exon	13410597	13410733	.	+	.	transcript_id "Ledus.S4G178700.t1"; gene_id "Ledus.S4G178700"
Ledus.S4	AUGUSTUS	intron	13410734	13410804	.	+	.	transcript_id "Ledus.S4G178700.t1"; gene_id "Ledus.S4G178700"
Ledus.S4	AUGUSTUS	CDS	13410805	13411026	0.45	+	1	transcript_id "Ledus.S4G178700.t1"; gene_id "Ledus.S4G178700"
Ledus.S4	AUGUSTUS	exon	13410805	13411026	.	+	.	transcript_id "Ledus.S4G178700.t1"; gene_id "Ledus.S4G178700"
Ledus.S4	AUGUSTUS	intron	13411027	13411187	.	+	.	transcript_id "Ledus.S4G178700.t1"; gene_id "Ledus.S4G178700"
Ledus.S4	AUGUSTUS	CDS	13411188	13411737	0.71	+	1	transcript_id "Ledus.S4G178700.t1"; gene_id "Ledus.S4G178700"
Ledus.S4	AUGUSTUS	exon	13411188	13411737	.	+	.	transcript_id "Ledus.S4G178700.t1"; gene_id "Ledus.S4G178700"
Ledus.S4	AUGUSTUS	stop_codon	13411738	13411740	.	+	0	transcript_id "Ledus.S4G178700.t1"; gene_id "Ledus.S4G178700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6650.t1 is derived from g4093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32856871	32860025	.	-	.	Ledus.S1G407100
Ledus.S1	AUGUSTUS	transcript	32856871	32860025	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	stop_codon	32856868	32856870	.	-	0	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	CDS	32856871	32857095	0.5	-	0	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	exon	32856871	32857095	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	intron	32857096	32857193	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	CDS	32857194	32857301	1	-	0	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	exon	32857194	32857301	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	intron	32857302	32857381	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	CDS	32857382	32857654	1	-	0	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	exon	32857382	32857654	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	intron	32857655	32857743	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	CDS	32857744	32857830	1	-	0	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	exon	32857744	32857830	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	intron	32857831	32857921	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	CDS	32857922	32858113	1	-	0	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	exon	32857922	32858113	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	intron	32858114	32858195	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	CDS	32858196	32858327	1	-	0	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	exon	32858196	32858327	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	intron	32858328	32858403	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	CDS	32858404	32858517	1	-	0	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	exon	32858404	32858517	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	intron	32858518	32858635	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	CDS	32858636	32858807	0.79	-	1	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	exon	32858636	32858807	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	intron	32858808	32858896	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	CDS	32858897	32859177	1	-	0	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	exon	32858897	32859177	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	intron	32859178	32859264	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	CDS	32859265	32859344	1	-	2	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	exon	32859265	32859344	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	intron	32859345	32859424	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	CDS	32859425	32860025	1	-	0	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	exon	32859425	32860025	.	-	.	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
Ledus.S1	AUGUSTUS	start_codon	32860023	32860025	.	-	0	transcript_id "Ledus.S1G407100.t1"; gene_id "Ledus.S1G407100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4336.t1 is derived from g1772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16437267	16437663	.	-	.	Ledus.S1G175700
Ledus.S1	AUGUSTUS	transcript	16437267	16437663	.	-	.	transcript_id "Ledus.S1G175700.t1"; gene_id "Ledus.S1G175700"
Ledus.S1	AUGUSTUS	stop_codon	16437264	16437266	.	-	0	transcript_id "Ledus.S1G175700.t1"; gene_id "Ledus.S1G175700"
Ledus.S1	AUGUSTUS	CDS	16437267	16437314	0.95	-	0	transcript_id "Ledus.S1G175700.t1"; gene_id "Ledus.S1G175700"
Ledus.S1	AUGUSTUS	exon	16437267	16437314	.	-	.	transcript_id "Ledus.S1G175700.t1"; gene_id "Ledus.S1G175700"
Ledus.S1	AUGUSTUS	intron	16437315	16437393	.	-	.	transcript_id "Ledus.S1G175700.t1"; gene_id "Ledus.S1G175700"
Ledus.S1	AUGUSTUS	CDS	16437394	16437663	0.8	-	0	transcript_id "Ledus.S1G175700.t1"; gene_id "Ledus.S1G175700"
Ledus.S1	AUGUSTUS	exon	16437394	16437663	.	-	.	transcript_id "Ledus.S1G175700.t1"; gene_id "Ledus.S1G175700"
Ledus.S1	AUGUSTUS	start_codon	16437661	16437663	.	-	0	transcript_id "Ledus.S1G175700.t1"; gene_id "Ledus.S1G175700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8687.t1 is derived from g9717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1372523	1375356	.	+	.	Ledus.S3G016400
Ledus.S3	AUGUSTUS	transcript	1372523	1375356	.	+	.	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	start_codon	1372523	1372525	.	+	0	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	CDS	1372523	1372574	0.98	+	0	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	exon	1372523	1372574	.	+	.	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	intron	1372575	1372669	.	+	.	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	CDS	1372670	1372730	0.99	+	2	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	exon	1372670	1372730	.	+	.	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	intron	1372731	1372796	.	+	.	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	CDS	1372797	1373535	0.97	+	1	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	exon	1372797	1373535	.	+	.	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	intron	1373536	1373673	.	+	.	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	CDS	1373674	1375356	0.98	+	0	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	exon	1373674	1375356	.	+	.	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
Ledus.S3	AUGUSTUS	stop_codon	1375357	1375359	.	+	0	transcript_id "Ledus.S3G016400.t1"; gene_id "Ledus.S3G016400"
# This transcript jg4860.t2 is derived from g2298.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4861.t1 is derived from g2299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20422584	20423054	.	-	.	Ledus.S1G228200
Ledus.S1	AUGUSTUS	transcript	20422584	20423054	.	-	.	transcript_id "Ledus.S1G228200.t1"; gene_id "Ledus.S1G228200"
Ledus.S1	AUGUSTUS	stop_codon	20422581	20422583	.	-	0	transcript_id "Ledus.S1G228200.t1"; gene_id "Ledus.S1G228200"
Ledus.S1	AUGUSTUS	CDS	20422584	20422645	1	-	2	transcript_id "Ledus.S1G228200.t1"; gene_id "Ledus.S1G228200"
Ledus.S1	AUGUSTUS	exon	20422584	20422645	.	-	.	transcript_id "Ledus.S1G228200.t1"; gene_id "Ledus.S1G228200"
Ledus.S1	AUGUSTUS	intron	20422646	20422783	.	-	.	transcript_id "Ledus.S1G228200.t1"; gene_id "Ledus.S1G228200"
Ledus.S1	AUGUSTUS	CDS	20422784	20423054	0.78	-	0	transcript_id "Ledus.S1G228200.t1"; gene_id "Ledus.S1G228200"
Ledus.S1	AUGUSTUS	exon	20422784	20423054	.	-	.	transcript_id "Ledus.S1G228200.t1"; gene_id "Ledus.S1G228200"
Ledus.S1	AUGUSTUS	start_codon	20423052	20423054	.	-	0	transcript_id "Ledus.S1G228200.t1"; gene_id "Ledus.S1G228200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12708.t1 is derived from g6330.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14009289	14015577	.	-	.	Ledus.S4G186400
Ledus.S4	AUGUSTUS	transcript	14009289	14015577	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	stop_codon	14009286	14009288	.	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14009289	14009473	1	-	2	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14009289	14009473	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14009474	14009559	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14009560	14009609	1	-	1	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14009560	14009609	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14009610	14009687	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14009688	14009767	1	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14009688	14009767	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14009768	14009844	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14009845	14010000	1	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14009845	14010000	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14010001	14010119	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14010120	14010266	1	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14010120	14010266	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14010267	14010344	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14010345	14010468	1	-	1	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14010345	14010468	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14010469	14010592	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14010593	14010705	1	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14010593	14010705	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14010706	14010784	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14010785	14010918	1	-	2	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14010785	14010918	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14010919	14010987	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14010988	14011174	1	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14010988	14011174	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14011175	14011255	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14011256	14011703	0.69	-	1	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14011256	14011703	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14011704	14011820	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14011821	14011873	0.98	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14011821	14011873	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14011874	14011966	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14011967	14012029	1	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14011967	14012029	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14012030	14012121	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14012122	14012178	1	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14012122	14012178	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14012179	14012354	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14012355	14012549	1	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14012355	14012549	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14012550	14012702	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14012703	14013230	1	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14012703	14013230	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14013231	14013365	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14013366	14014932	1	-	1	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14013366	14014932	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14014933	14015011	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14015012	14015256	1	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14015012	14015256	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14015257	14015350	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14015351	14015423	1	-	1	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14015351	14015423	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	intron	14015424	14015521	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	CDS	14015522	14015577	0.66	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	exon	14015522	14015577	.	-	.	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
Ledus.S4	AUGUSTUS	start_codon	14015575	14015577	.	-	0	transcript_id "Ledus.S4G186400.t1"; gene_id "Ledus.S4G186400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1524.t1 is derived from g8385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10784773	10786800	.	-	.	Ledus.S2G140600
Ledus.S2	AUGUSTUS	transcript	10784773	10786800	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	stop_codon	10784770	10784772	.	-	0	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	CDS	10784773	10784932	0.96	-	1	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	exon	10784773	10784932	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	intron	10784933	10785044	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	CDS	10785045	10785136	1	-	0	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	exon	10785045	10785136	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	intron	10785137	10785227	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	CDS	10785228	10785310	1	-	2	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	exon	10785228	10785310	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	intron	10785311	10785425	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	CDS	10785426	10785507	1	-	0	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	exon	10785426	10785507	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	intron	10785508	10785625	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	CDS	10785626	10785853	0.99	-	0	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	exon	10785626	10785853	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	intron	10785854	10785945	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	CDS	10785946	10786047	1	-	0	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	exon	10785946	10786047	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	intron	10786048	10786170	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	CDS	10786171	10786306	1	-	1	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	exon	10786171	10786306	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	intron	10786307	10786388	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	CDS	10786389	10786438	1	-	0	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	exon	10786389	10786438	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	intron	10786439	10786584	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	CDS	10786585	10786800	0.48	-	0	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	exon	10786585	10786800	.	-	.	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
Ledus.S2	AUGUSTUS	start_codon	10786798	10786800	.	-	0	transcript_id "Ledus.S2G140600.t1"; gene_id "Ledus.S2G140600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3994.t1 is derived from g1430.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13945427	13946305	.	+	.	Ledus.S1G141500
Ledus.S1	AUGUSTUS	transcript	13945427	13946305	.	+	.	transcript_id "Ledus.S1G141500.t1"; gene_id "Ledus.S1G141500"
Ledus.S1	AUGUSTUS	start_codon	13945427	13945429	.	+	0	transcript_id "Ledus.S1G141500.t1"; gene_id "Ledus.S1G141500"
Ledus.S1	AUGUSTUS	CDS	13945427	13945626	0.52	+	0	transcript_id "Ledus.S1G141500.t1"; gene_id "Ledus.S1G141500"
Ledus.S1	AUGUSTUS	exon	13945427	13945626	.	+	.	transcript_id "Ledus.S1G141500.t1"; gene_id "Ledus.S1G141500"
Ledus.S1	AUGUSTUS	intron	13945627	13945713	.	+	.	transcript_id "Ledus.S1G141500.t1"; gene_id "Ledus.S1G141500"
Ledus.S1	AUGUSTUS	CDS	13945714	13946305	0.54	+	1	transcript_id "Ledus.S1G141500.t1"; gene_id "Ledus.S1G141500"
Ledus.S1	AUGUSTUS	exon	13945714	13946305	.	+	.	transcript_id "Ledus.S1G141500.t1"; gene_id "Ledus.S1G141500"
Ledus.S1	AUGUSTUS	stop_codon	13946306	13946308	.	+	0	transcript_id "Ledus.S1G141500.t1"; gene_id "Ledus.S1G141500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6119.t1 is derived from g3562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29002342	29011782	.	-	.	Ledus.S1G354000
Ledus.S1	AUGUSTUS	transcript	29002342	29011782	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	stop_codon	29002339	29002341	.	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29002342	29002515	0.97	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29002342	29002515	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29002516	29002623	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29002624	29002917	0.95	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29002624	29002917	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29002918	29003038	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29003039	29003147	0.98	-	1	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29003039	29003147	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29003148	29003234	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29003235	29003482	1	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29003235	29003482	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29003483	29003590	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29003591	29003644	1	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29003591	29003644	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29003645	29003746	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29003747	29003887	0.96	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29003747	29003887	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29003888	29003997	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29003998	29004165	1	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29003998	29004165	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29004166	29004280	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29004281	29004376	1	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29004281	29004376	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29004377	29004542	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29004543	29004642	1	-	1	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29004543	29004642	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29004643	29004779	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29004780	29004880	1	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29004780	29004880	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29004881	29005021	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29005022	29005204	1	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29005022	29005204	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29005205	29005369	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29005370	29005594	1	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29005370	29005594	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29005595	29005743	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29005744	29006593	1	-	1	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29005744	29006593	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29006594	29006694	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29006695	29006834	0.95	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29006695	29006834	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29006835	29006952	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29006953	29007711	0.96	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29006953	29007711	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29007712	29007816	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29007817	29008259	1	-	2	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29007817	29008259	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29008260	29008349	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29008350	29010122	0.99	-	2	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29008350	29010122	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29010123	29010235	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29010236	29010298	1	-	2	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29010236	29010298	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	intron	29010299	29010428	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	CDS	29010429	29011782	0.96	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	exon	29010429	29011782	.	-	.	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
Ledus.S1	AUGUSTUS	start_codon	29011780	29011782	.	-	0	transcript_id "Ledus.S1G354000.t1"; gene_id "Ledus.S1G354000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10842.t1 is derived from g6462.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C32	AUGUSTUS	gene	17326	18759	.	-	.	Ledus.C32G000200
Ledus.C32	AUGUSTUS	transcript	17326	18759	.	-	.	transcript_id "Ledus.C32G000200.t1"; gene_id "Ledus.C32G000200"
Ledus.C32	AUGUSTUS	stop_codon	17323	17325	.	-	0	transcript_id "Ledus.C32G000200.t1"; gene_id "Ledus.C32G000200"
Ledus.C32	AUGUSTUS	CDS	17326	18480	0.87	-	0	transcript_id "Ledus.C32G000200.t1"; gene_id "Ledus.C32G000200"
Ledus.C32	AUGUSTUS	exon	17326	18480	.	-	.	transcript_id "Ledus.C32G000200.t1"; gene_id "Ledus.C32G000200"
Ledus.C32	AUGUSTUS	intron	18481	18558	.	-	.	transcript_id "Ledus.C32G000200.t1"; gene_id "Ledus.C32G000200"
Ledus.C32	AUGUSTUS	CDS	18559	18759	0.71	-	0	transcript_id "Ledus.C32G000200.t1"; gene_id "Ledus.C32G000200"
Ledus.C32	AUGUSTUS	exon	18559	18759	.	-	.	transcript_id "Ledus.C32G000200.t1"; gene_id "Ledus.C32G000200"
Ledus.C32	AUGUSTUS	start_codon	18757	18759	.	-	0	transcript_id "Ledus.C32G000200.t1"; gene_id "Ledus.C32G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12107.t1 is derived from g5726.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9533288	9533872	.	-	.	Ledus.S4G126300
Ledus.S4	AUGUSTUS	transcript	9533288	9533872	.	-	.	transcript_id "Ledus.S4G126300.t1"; gene_id "Ledus.S4G126300"
Ledus.S4	AUGUSTUS	stop_codon	9533285	9533287	.	-	0	transcript_id "Ledus.S4G126300.t1"; gene_id "Ledus.S4G126300"
Ledus.S4	AUGUSTUS	CDS	9533288	9533872	0.68	-	0	transcript_id "Ledus.S4G126300.t1"; gene_id "Ledus.S4G126300"
Ledus.S4	AUGUSTUS	exon	9533288	9533872	.	-	.	transcript_id "Ledus.S4G126300.t1"; gene_id "Ledus.S4G126300"
Ledus.S4	AUGUSTUS	start_codon	9533870	9533872	.	-	0	transcript_id "Ledus.S4G126300.t1"; gene_id "Ledus.S4G126300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3422.t1 is derived from g857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8237234	8238934	.	+	.	Ledus.S1G084300
Ledus.S1	AUGUSTUS	transcript	8237234	8238934	.	+	.	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	start_codon	8237234	8237236	.	+	0	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	CDS	8237234	8237357	0.61	+	0	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	exon	8237234	8237357	.	+	.	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	intron	8237358	8237535	.	+	.	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	CDS	8237536	8237681	1	+	2	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	exon	8237536	8237681	.	+	.	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	intron	8237682	8237837	.	+	.	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	CDS	8237838	8237916	1	+	0	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	exon	8237838	8237916	.	+	.	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	intron	8237917	8238007	.	+	.	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	CDS	8238008	8238090	1	+	2	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	exon	8238008	8238090	.	+	.	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	intron	8238091	8238178	.	+	.	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	CDS	8238179	8238934	0.83	+	0	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	exon	8238179	8238934	.	+	.	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
Ledus.S1	AUGUSTUS	stop_codon	8238935	8238937	.	+	0	transcript_id "Ledus.S1G084300.t1"; gene_id "Ledus.S1G084300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4636.t1 is derived from g2073.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18560000	18562948	.	-	.	Ledus.S1G205700
Ledus.S1	AUGUSTUS	transcript	18560000	18562948	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	stop_codon	18559997	18559999	.	-	0	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18560000	18560131	1	-	0	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18560000	18560131	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	intron	18560132	18560215	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18560216	18560282	0.97	-	1	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18560216	18560282	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	intron	18560283	18560397	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18560398	18560444	1	-	0	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18560398	18560444	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	intron	18560445	18560545	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18560546	18560912	0.94	-	1	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18560546	18560912	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	intron	18560913	18561013	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18561014	18561087	1	-	0	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18561014	18561087	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	intron	18561088	18561213	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18561214	18561301	1	-	1	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18561214	18561301	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	intron	18561302	18561482	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18561483	18561550	1	-	0	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18561483	18561550	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	intron	18561551	18561732	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18561733	18561804	1	-	0	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18561733	18561804	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	intron	18561805	18561954	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18561955	18562038	1	-	0	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18561955	18562038	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	intron	18562039	18562164	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18562165	18562278	1	-	0	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18562165	18562278	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	intron	18562279	18562375	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18562376	18562459	1	-	0	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18562376	18562459	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	intron	18562460	18562548	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18562549	18562625	1	-	2	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18562549	18562625	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	intron	18562626	18562713	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	CDS	18562714	18562948	0.88	-	0	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	exon	18562714	18562948	.	-	.	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
Ledus.S1	AUGUSTUS	start_codon	18562946	18562948	.	-	0	transcript_id "Ledus.S1G205700.t1"; gene_id "Ledus.S1G205700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2675.t1 is derived from g108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1591955	1594017	.	+	.	Ledus.S1G009600
Ledus.S1	AUGUSTUS	transcript	1591955	1594017	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	start_codon	1591955	1591957	.	+	0	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	CDS	1591955	1592148	0.95	+	0	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	exon	1591955	1592148	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	intron	1592149	1592246	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	CDS	1592247	1592568	1	+	1	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	exon	1592247	1592568	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	intron	1592569	1592661	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	CDS	1592662	1592814	1	+	0	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	exon	1592662	1592814	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	intron	1592815	1592890	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	CDS	1592891	1593136	0.94	+	0	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	exon	1592891	1593136	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	intron	1593137	1593213	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	CDS	1593214	1593297	0.98	+	0	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	exon	1593214	1593297	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	intron	1593298	1593376	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	CDS	1593377	1593455	1	+	0	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	exon	1593377	1593455	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	intron	1593456	1593538	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	CDS	1593539	1593645	1	+	2	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	exon	1593539	1593645	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	intron	1593646	1593721	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	CDS	1593722	1593840	1	+	0	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	exon	1593722	1593840	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	intron	1593841	1593914	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	CDS	1593915	1594017	0.94	+	1	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	exon	1593915	1594017	.	+	.	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
Ledus.S1	AUGUSTUS	stop_codon	1594018	1594020	.	+	0	transcript_id "Ledus.S1G009600.t1"; gene_id "Ledus.S1G009600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3385.t1 is derived from g820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8001900	8004106	.	+	.	Ledus.S1G080600
Ledus.S1	AUGUSTUS	transcript	8001900	8004106	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	start_codon	8001900	8001902	.	+	0	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	CDS	8001900	8002350	0.59	+	0	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	exon	8001900	8002350	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	intron	8002351	8002440	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	CDS	8002441	8002613	0.95	+	2	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	exon	8002441	8002613	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	intron	8002614	8002714	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	CDS	8002715	8002855	0.95	+	0	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	exon	8002715	8002855	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	intron	8002856	8003027	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	CDS	8003028	8003141	1	+	0	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	exon	8003028	8003141	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	intron	8003142	8003263	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	CDS	8003264	8003437	1	+	0	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	exon	8003264	8003437	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	intron	8003438	8003608	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	CDS	8003609	8003724	1	+	0	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	exon	8003609	8003724	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	intron	8003725	8003896	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	CDS	8003897	8003998	1	+	1	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	exon	8003897	8003998	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	intron	8003999	8004090	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	CDS	8004091	8004106	1	+	1	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	exon	8004091	8004106	.	+	.	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
Ledus.S1	AUGUSTUS	stop_codon	8004107	8004109	.	+	0	transcript_id "Ledus.S1G080600.t1"; gene_id "Ledus.S1G080600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5424.t1 is derived from g2863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24090761	24095011	.	+	.	Ledus.S1G284500
Ledus.S1	AUGUSTUS	transcript	24090761	24095011	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	start_codon	24090761	24090763	.	+	0	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24090761	24090833	1	+	0	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24090761	24090833	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24090834	24090931	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24090932	24091233	1	+	2	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24090932	24091233	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24091234	24091326	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24091327	24091589	1	+	0	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24091327	24091589	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24091590	24091682	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24091683	24091949	1	+	1	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24091683	24091949	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24091950	24092045	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24092046	24092278	0.93	+	1	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24092046	24092278	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24092279	24092387	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24092388	24092505	0.97	+	2	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24092388	24092505	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24092506	24092602	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24092603	24092674	1	+	1	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24092603	24092674	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24092675	24092760	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24092761	24092829	1	+	1	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24092761	24092829	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24092830	24092946	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24092947	24093018	0.95	+	1	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24092947	24093018	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24093019	24093100	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24093101	24093172	1	+	1	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24093101	24093172	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24093173	24093256	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24093257	24093483	1	+	1	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24093257	24093483	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24093484	24093556	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24093557	24093762	1	+	2	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24093557	24093762	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24093763	24093848	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24093849	24093975	1	+	0	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24093849	24093975	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24093976	24094058	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24094059	24094130	1	+	2	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24094059	24094130	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24094131	24094209	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24094210	24094396	1	+	2	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24094210	24094396	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24094397	24094487	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24094488	24094620	1	+	1	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24094488	24094620	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	intron	24094621	24094705	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	CDS	24094706	24095011	0.69	+	0	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	exon	24094706	24095011	.	+	.	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
Ledus.S1	AUGUSTUS	stop_codon	24095012	24095014	.	+	0	transcript_id "Ledus.S1G284500.t1"; gene_id "Ledus.S1G284500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11175.t1 is derived from g4793.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2396500	2399119	.	+	.	Ledus.S4G033100
Ledus.S4	AUGUSTUS	transcript	2396500	2399119	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	start_codon	2396500	2396502	.	+	0	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	CDS	2396500	2396671	0.95	+	0	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	exon	2396500	2396671	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	intron	2396672	2397284	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	CDS	2397285	2397436	1	+	2	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	exon	2397285	2397436	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	intron	2397437	2397510	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	CDS	2397511	2397573	1	+	0	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	exon	2397511	2397573	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	intron	2397574	2397666	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	CDS	2397667	2397786	1	+	0	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	exon	2397667	2397786	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	intron	2397787	2397865	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	CDS	2397866	2398141	1	+	0	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	exon	2397866	2398141	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	intron	2398142	2398302	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	CDS	2398303	2398638	0.87	+	0	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	exon	2398303	2398638	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	intron	2398639	2398735	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	CDS	2398736	2399119	0.97	+	0	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	exon	2398736	2399119	.	+	.	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
Ledus.S4	AUGUSTUS	stop_codon	2399120	2399122	.	+	0	transcript_id "Ledus.S4G033100.t1"; gene_id "Ledus.S4G033100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6151.t1 is derived from g3594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29294111	29295079	.	-	.	Ledus.S1G357200
Ledus.S1	AUGUSTUS	transcript	29294111	29295079	.	-	.	transcript_id "Ledus.S1G357200.t1"; gene_id "Ledus.S1G357200"
Ledus.S1	AUGUSTUS	stop_codon	29294108	29294110	.	-	0	transcript_id "Ledus.S1G357200.t1"; gene_id "Ledus.S1G357200"
Ledus.S1	AUGUSTUS	CDS	29294111	29295079	1	-	0	transcript_id "Ledus.S1G357200.t1"; gene_id "Ledus.S1G357200"
Ledus.S1	AUGUSTUS	exon	29294111	29295079	.	-	.	transcript_id "Ledus.S1G357200.t1"; gene_id "Ledus.S1G357200"
Ledus.S1	AUGUSTUS	start_codon	29295077	29295079	.	-	0	transcript_id "Ledus.S1G357200.t1"; gene_id "Ledus.S1G357200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3827.t1 is derived from g1263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12816744	12818451	.	+	.	Ledus.S1G124800
Ledus.S1	AUGUSTUS	transcript	12816744	12818451	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	start_codon	12816744	12816746	.	+	0	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	CDS	12816744	12816846	1	+	0	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	exon	12816744	12816846	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	intron	12816847	12816938	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	CDS	12816939	12817039	1	+	2	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	exon	12816939	12817039	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	intron	12817040	12817137	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	CDS	12817138	12817247	1	+	0	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	exon	12817138	12817247	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	intron	12817248	12817448	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	CDS	12817449	12817524	1	+	1	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	exon	12817449	12817524	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	intron	12817525	12817657	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	CDS	12817658	12817789	1	+	0	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	exon	12817658	12817789	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	intron	12817790	12817935	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	CDS	12817936	12818107	0.96	+	0	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	exon	12817936	12818107	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	intron	12818108	12818185	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	CDS	12818186	12818451	0.96	+	2	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	exon	12818186	12818451	.	+	.	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
Ledus.S1	AUGUSTUS	stop_codon	12818452	12818454	.	+	0	transcript_id "Ledus.S1G124800.t1"; gene_id "Ledus.S1G124800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg651.t1 is derived from g7512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3894394	3895782	.	+	.	Ledus.S2G053300
Ledus.S2	AUGUSTUS	transcript	3894394	3895782	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	start_codon	3894394	3894396	.	+	0	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	CDS	3894394	3894583	1	+	0	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	exon	3894394	3894583	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	intron	3894584	3894757	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	CDS	3894758	3894835	1	+	2	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	exon	3894758	3894835	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	intron	3894836	3894919	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	CDS	3894920	3895026	0.69	+	2	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	exon	3894920	3895026	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	intron	3895027	3895129	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	CDS	3895130	3895207	0.68	+	0	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	exon	3895130	3895207	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	intron	3895208	3895293	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	CDS	3895294	3895395	0.98	+	0	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	exon	3895294	3895395	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	intron	3895396	3895503	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	CDS	3895504	3895585	1	+	0	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	exon	3895504	3895585	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	intron	3895586	3895666	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	CDS	3895667	3895782	1	+	2	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	exon	3895667	3895782	.	+	.	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
Ledus.S2	AUGUSTUS	stop_codon	3895783	3895785	.	+	0	transcript_id "Ledus.S2G053300.t1"; gene_id "Ledus.S2G053300"
# This transcript jg8558.t2 is derived from g9588.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8559.t1 is derived from g9589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	176079	176889	.	+	.	Ledus.S3G003600
Ledus.S3	AUGUSTUS	transcript	176079	176889	.	+	.	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	start_codon	176079	176081	.	+	0	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	CDS	176079	176127	0.98	+	0	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	exon	176079	176127	.	+	.	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	intron	176128	176204	.	+	.	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	CDS	176205	176353	1	+	2	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	exon	176205	176353	.	+	.	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	intron	176354	176445	.	+	.	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	CDS	176446	176494	1	+	0	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	exon	176446	176494	.	+	.	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	intron	176495	176588	.	+	.	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	CDS	176589	176728	1	+	2	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	exon	176589	176728	.	+	.	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	intron	176729	176808	.	+	.	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	CDS	176809	176889	1	+	0	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	exon	176809	176889	.	+	.	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
Ledus.S3	AUGUSTUS	stop_codon	176890	176892	.	+	0	transcript_id "Ledus.S3G003600.t1"; gene_id "Ledus.S3G003600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9256.t1 is derived from g10286.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5630690	5631487	.	-	.	Ledus.S3G073300
Ledus.S3	AUGUSTUS	transcript	5630690	5631487	.	-	.	transcript_id "Ledus.S3G073300.t1"; gene_id "Ledus.S3G073300"
Ledus.S3	AUGUSTUS	stop_codon	5630687	5630689	.	-	0	transcript_id "Ledus.S3G073300.t1"; gene_id "Ledus.S3G073300"
Ledus.S3	AUGUSTUS	CDS	5630690	5631487	0.95	-	0	transcript_id "Ledus.S3G073300.t1"; gene_id "Ledus.S3G073300"
Ledus.S3	AUGUSTUS	exon	5630690	5631487	.	-	.	transcript_id "Ledus.S3G073300.t1"; gene_id "Ledus.S3G073300"
Ledus.S3	AUGUSTUS	start_codon	5631485	5631487	.	-	0	transcript_id "Ledus.S3G073300.t1"; gene_id "Ledus.S3G073300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7891.t1 is derived from g12562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7702514	7702789	.	+	.	Ledus.S5G066900
Ledus.S5	AUGUSTUS	transcript	7702514	7702789	.	+	.	transcript_id "Ledus.S5G066900.t1"; gene_id "Ledus.S5G066900"
Ledus.S5	AUGUSTUS	start_codon	7702514	7702516	.	+	0	transcript_id "Ledus.S5G066900.t1"; gene_id "Ledus.S5G066900"
Ledus.S5	AUGUSTUS	CDS	7702514	7702789	0.81	+	0	transcript_id "Ledus.S5G066900.t1"; gene_id "Ledus.S5G066900"
Ledus.S5	AUGUSTUS	exon	7702514	7702789	.	+	.	transcript_id "Ledus.S5G066900.t1"; gene_id "Ledus.S5G066900"
Ledus.S5	AUGUSTUS	stop_codon	7702790	7702792	.	+	0	transcript_id "Ledus.S5G066900.t1"; gene_id "Ledus.S5G066900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1691.t1 is derived from g8552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11855888	11858080	.	-	.	Ledus.S2G157300
Ledus.S2	AUGUSTUS	transcript	11855888	11858080	.	-	.	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	stop_codon	11855885	11855887	.	-	0	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	CDS	11855888	11856907	0.99	-	0	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	exon	11855888	11856907	.	-	.	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	intron	11856908	11856988	.	-	.	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	CDS	11856989	11857642	1	-	0	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	exon	11856989	11857642	.	-	.	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	intron	11857643	11857742	.	-	.	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	CDS	11857743	11857919	1	-	0	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	exon	11857743	11857919	.	-	.	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	intron	11857920	11858011	.	-	.	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	CDS	11858012	11858080	0.67	-	0	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	exon	11858012	11858080	.	-	.	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
Ledus.S2	AUGUSTUS	start_codon	11858078	11858080	.	-	0	transcript_id "Ledus.S2G157300.t1"; gene_id "Ledus.S2G157300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5373.t1 is derived from g2812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23857444	23859497	.	-	.	Ledus.S1G279400
Ledus.S1	AUGUSTUS	transcript	23857444	23859497	.	-	.	transcript_id "Ledus.S1G279400.t1"; gene_id "Ledus.S1G279400"
Ledus.S1	AUGUSTUS	stop_codon	23857441	23857443	.	-	0	transcript_id "Ledus.S1G279400.t1"; gene_id "Ledus.S1G279400"
Ledus.S1	AUGUSTUS	CDS	23857444	23858570	0.99	-	2	transcript_id "Ledus.S1G279400.t1"; gene_id "Ledus.S1G279400"
Ledus.S1	AUGUSTUS	exon	23857444	23858570	.	-	.	transcript_id "Ledus.S1G279400.t1"; gene_id "Ledus.S1G279400"
Ledus.S1	AUGUSTUS	intron	23858571	23859088	.	-	.	transcript_id "Ledus.S1G279400.t1"; gene_id "Ledus.S1G279400"
Ledus.S1	AUGUSTUS	CDS	23859089	23859497	0.66	-	0	transcript_id "Ledus.S1G279400.t1"; gene_id "Ledus.S1G279400"
Ledus.S1	AUGUSTUS	exon	23859089	23859497	.	-	.	transcript_id "Ledus.S1G279400.t1"; gene_id "Ledus.S1G279400"
Ledus.S1	AUGUSTUS	start_codon	23859495	23859497	.	-	0	transcript_id "Ledus.S1G279400.t1"; gene_id "Ledus.S1G279400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5390.t1 is derived from g2829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23970191	23972176	.	-	.	Ledus.S1G281100
Ledus.S1	AUGUSTUS	transcript	23970191	23971561	.	-	.	transcript_id "Ledus.S1G281100.t1"; gene_id "Ledus.S1G281100"
Ledus.S1	AUGUSTUS	stop_codon	23970188	23970190	.	-	0	transcript_id "Ledus.S1G281100.t1"; gene_id "Ledus.S1G281100"
Ledus.S1	AUGUSTUS	CDS	23970191	23971561	0.99	-	0	transcript_id "Ledus.S1G281100.t1"; gene_id "Ledus.S1G281100"
Ledus.S1	AUGUSTUS	exon	23970191	23971561	.	-	.	transcript_id "Ledus.S1G281100.t1"; gene_id "Ledus.S1G281100"
Ledus.S1	AUGUSTUS	start_codon	23971559	23971561	.	-	0	transcript_id "Ledus.S1G281100.t1"; gene_id "Ledus.S1G281100"
Ledus.S1	AUGUSTUS	transcript	23970191	23972176	.	-	.	transcript_id "Ledus.S1G281100.t2"; gene_id "Ledus.S1G281100"
Ledus.S1	AUGUSTUS	stop_codon	23970188	23970190	.	-	0	transcript_id "Ledus.S1G281100.t2"; gene_id "Ledus.S1G281100"
Ledus.S1	AUGUSTUS	CDS	23970191	23972176	0.8	-	0	transcript_id "Ledus.S1G281100.t2"; gene_id "Ledus.S1G281100"
Ledus.S1	AUGUSTUS	exon	23970191	23972176	.	-	.	transcript_id "Ledus.S1G281100.t2"; gene_id "Ledus.S1G281100"
Ledus.S1	AUGUSTUS	start_codon	23972174	23972176	.	-	0	transcript_id "Ledus.S1G281100.t2"; gene_id "Ledus.S1G281100"
# This transcript jg8480.t2 is derived from g13152.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8481.t1 is derived from g13153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12134542	12135833	.	+	.	Ledus.S5G125900
Ledus.S5	AUGUSTUS	transcript	12134542	12135833	.	+	.	transcript_id "Ledus.S5G125900.t1"; gene_id "Ledus.S5G125900"
Ledus.S5	AUGUSTUS	start_codon	12134542	12134544	.	+	0	transcript_id "Ledus.S5G125900.t1"; gene_id "Ledus.S5G125900"
Ledus.S5	AUGUSTUS	CDS	12134542	12135687	0.35	+	0	transcript_id "Ledus.S5G125900.t1"; gene_id "Ledus.S5G125900"
Ledus.S5	AUGUSTUS	exon	12134542	12135687	.	+	.	transcript_id "Ledus.S5G125900.t1"; gene_id "Ledus.S5G125900"
Ledus.S5	AUGUSTUS	intron	12135688	12135779	.	+	.	transcript_id "Ledus.S5G125900.t1"; gene_id "Ledus.S5G125900"
Ledus.S5	AUGUSTUS	CDS	12135780	12135833	0.65	+	0	transcript_id "Ledus.S5G125900.t1"; gene_id "Ledus.S5G125900"
Ledus.S5	AUGUSTUS	exon	12135780	12135833	.	+	.	transcript_id "Ledus.S5G125900.t1"; gene_id "Ledus.S5G125900"
Ledus.S5	AUGUSTUS	stop_codon	12135834	12135836	.	+	0	transcript_id "Ledus.S5G125900.t1"; gene_id "Ledus.S5G125900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13065.t1 is derived from g6875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4792071	4792918	.	-	.	Ledus.S6G012700
Ledus.S6	AUGUSTUS	transcript	4792071	4792918	.	-	.	transcript_id "Ledus.S6G012700.t1"; gene_id "Ledus.S6G012700"
Ledus.S6	AUGUSTUS	stop_codon	4792068	4792070	.	-	0	transcript_id "Ledus.S6G012700.t1"; gene_id "Ledus.S6G012700"
Ledus.S6	AUGUSTUS	CDS	4792071	4792172	0.41	-	0	transcript_id "Ledus.S6G012700.t1"; gene_id "Ledus.S6G012700"
Ledus.S6	AUGUSTUS	exon	4792071	4792172	.	-	.	transcript_id "Ledus.S6G012700.t1"; gene_id "Ledus.S6G012700"
Ledus.S6	AUGUSTUS	intron	4792173	4792411	.	-	.	transcript_id "Ledus.S6G012700.t1"; gene_id "Ledus.S6G012700"
Ledus.S6	AUGUSTUS	CDS	4792412	4792526	0.46	-	1	transcript_id "Ledus.S6G012700.t1"; gene_id "Ledus.S6G012700"
Ledus.S6	AUGUSTUS	exon	4792412	4792526	.	-	.	transcript_id "Ledus.S6G012700.t1"; gene_id "Ledus.S6G012700"
Ledus.S6	AUGUSTUS	intron	4792527	4792622	.	-	.	transcript_id "Ledus.S6G012700.t1"; gene_id "Ledus.S6G012700"
Ledus.S6	AUGUSTUS	CDS	4792623	4792918	0.24	-	0	transcript_id "Ledus.S6G012700.t1"; gene_id "Ledus.S6G012700"
Ledus.S6	AUGUSTUS	exon	4792623	4792918	.	-	.	transcript_id "Ledus.S6G012700.t1"; gene_id "Ledus.S6G012700"
Ledus.S6	AUGUSTUS	start_codon	4792916	4792918	.	-	0	transcript_id "Ledus.S6G012700.t1"; gene_id "Ledus.S6G012700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1355.t1 is derived from g8216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9430637	9433052	.	-	.	Ledus.S2G123700
Ledus.S2	AUGUSTUS	transcript	9430637	9433052	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	stop_codon	9430634	9430636	.	-	0	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	CDS	9430637	9430637	1	-	1	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	exon	9430637	9430637	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	intron	9430638	9430915	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	CDS	9430916	9431044	1	-	1	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	exon	9430916	9431044	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	intron	9431045	9431166	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	CDS	9431167	9431474	0.99	-	0	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	exon	9431167	9431474	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	intron	9431475	9431577	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	CDS	9431578	9431884	0.98	-	1	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	exon	9431578	9431884	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	intron	9431885	9432053	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	CDS	9432054	9432178	1	-	0	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	exon	9432054	9432178	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	intron	9432179	9432248	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	CDS	9432249	9432676	0.42	-	2	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	exon	9432249	9432676	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	intron	9432677	9432799	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	CDS	9432800	9433052	0.15	-	0	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	exon	9432800	9433052	.	-	.	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
Ledus.S2	AUGUSTUS	start_codon	9433050	9433052	.	-	0	transcript_id "Ledus.S2G123700.t1"; gene_id "Ledus.S2G123700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6091.t1 is derived from g3534.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28879388	28880007	.	+	.	Ledus.S1G351200
Ledus.S1	AUGUSTUS	transcript	28879388	28880007	.	+	.	transcript_id "Ledus.S1G351200.t1"; gene_id "Ledus.S1G351200"
Ledus.S1	AUGUSTUS	start_codon	28879388	28879390	.	+	0	transcript_id "Ledus.S1G351200.t1"; gene_id "Ledus.S1G351200"
Ledus.S1	AUGUSTUS	CDS	28879388	28879513	0.94	+	0	transcript_id "Ledus.S1G351200.t1"; gene_id "Ledus.S1G351200"
Ledus.S1	AUGUSTUS	exon	28879388	28879513	.	+	.	transcript_id "Ledus.S1G351200.t1"; gene_id "Ledus.S1G351200"
Ledus.S1	AUGUSTUS	intron	28879514	28879716	.	+	.	transcript_id "Ledus.S1G351200.t1"; gene_id "Ledus.S1G351200"
Ledus.S1	AUGUSTUS	CDS	28879717	28880007	0.96	+	0	transcript_id "Ledus.S1G351200.t1"; gene_id "Ledus.S1G351200"
Ledus.S1	AUGUSTUS	exon	28879717	28880007	.	+	.	transcript_id "Ledus.S1G351200.t1"; gene_id "Ledus.S1G351200"
Ledus.S1	AUGUSTUS	stop_codon	28880008	28880010	.	+	0	transcript_id "Ledus.S1G351200.t1"; gene_id "Ledus.S1G351200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2346.t1 is derived from g9209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17376438	17377778	.	+	.	Ledus.S2G222800
Ledus.S2	AUGUSTUS	transcript	17376438	17377778	.	+	.	transcript_id "Ledus.S2G222800.t1"; gene_id "Ledus.S2G222800"
Ledus.S2	AUGUSTUS	start_codon	17376438	17376440	.	+	0	transcript_id "Ledus.S2G222800.t1"; gene_id "Ledus.S2G222800"
Ledus.S2	AUGUSTUS	CDS	17376438	17377778	0.62	+	0	transcript_id "Ledus.S2G222800.t1"; gene_id "Ledus.S2G222800"
Ledus.S2	AUGUSTUS	exon	17376438	17377778	.	+	.	transcript_id "Ledus.S2G222800.t1"; gene_id "Ledus.S2G222800"
Ledus.S2	AUGUSTUS	stop_codon	17377779	17377781	.	+	0	transcript_id "Ledus.S2G222800.t1"; gene_id "Ledus.S2G222800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10414.t1 is derived from g11444.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15032749	15036056	.	+	.	Ledus.S3G189100
Ledus.S3	AUGUSTUS	transcript	15032749	15036056	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	start_codon	15032749	15032751	.	+	0	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15032749	15032977	0.97	+	0	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15032749	15032977	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15032978	15033219	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15033220	15033271	1	+	2	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15033220	15033271	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15033272	15033493	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15033494	15033548	1	+	1	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15033494	15033548	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15033549	15033680	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15033681	15033749	1	+	0	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15033681	15033749	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15033750	15033878	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15033879	15034004	1	+	0	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15033879	15034004	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15034005	15034134	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15034135	15034185	1	+	0	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15034135	15034185	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15034186	15034273	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15034274	15034351	1	+	0	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15034274	15034351	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15034352	15034611	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15034612	15034714	0.99	+	0	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15034612	15034714	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15034715	15034843	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15034844	15034878	0.99	+	2	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15034844	15034878	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15034879	15034989	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15034990	15035340	1	+	0	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15034990	15035340	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15035341	15035669	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15035670	15036056	0.98	+	0	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15035670	15036056	.	+	.	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	stop_codon	15036057	15036059	.	+	0	transcript_id "Ledus.S3G189100.t1"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	transcript	15032749	15036056	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	start_codon	15032749	15032751	.	+	0	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15032749	15032977	0.96	+	0	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15032749	15032977	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15032978	15033219	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15033220	15033271	1	+	2	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15033220	15033271	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15033272	15033493	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15033494	15033548	1	+	1	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15033494	15033548	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15033549	15033680	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15033681	15033749	1	+	0	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15033681	15033749	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15033750	15033878	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15033879	15034004	1	+	0	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15033879	15034004	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15034005	15034134	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15034135	15034185	1	+	0	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15034135	15034185	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15034186	15034273	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15034274	15034351	1	+	0	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15034274	15034351	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15034352	15034448	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15034449	15034548	1	+	0	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15034449	15034548	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15034549	15034843	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15034844	15034878	0.98	+	2	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15034844	15034878	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15034879	15034989	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15034990	15035340	1	+	0	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15034990	15035340	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	intron	15035341	15035669	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	CDS	15035670	15036056	0.98	+	0	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	exon	15035670	15036056	.	+	.	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
Ledus.S3	AUGUSTUS	stop_codon	15036057	15036059	.	+	0	transcript_id "Ledus.S3G189100.t2"; gene_id "Ledus.S3G189100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11237.t1 is derived from g4855.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2864968	2866095	.	+	.	Ledus.S4G039300
Ledus.S4	AUGUSTUS	transcript	2864968	2866095	.	+	.	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	start_codon	2864968	2864970	.	+	0	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	CDS	2864968	2865043	0.94	+	0	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	exon	2864968	2865043	.	+	.	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	intron	2865044	2865218	.	+	.	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	CDS	2865219	2865415	1	+	2	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	exon	2865219	2865415	.	+	.	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	intron	2865416	2865499	.	+	.	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	CDS	2865500	2865670	1	+	0	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	exon	2865500	2865670	.	+	.	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	intron	2865671	2865753	.	+	.	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	CDS	2865754	2866095	0.52	+	0	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	exon	2865754	2866095	.	+	.	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
Ledus.S4	AUGUSTUS	stop_codon	2866096	2866098	.	+	0	transcript_id "Ledus.S4G039300.t1"; gene_id "Ledus.S4G039300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9492.t1 is derived from g10522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7404784	7409357	.	-	.	Ledus.S3G096900
Ledus.S3	AUGUSTUS	transcript	7404784	7409357	.	-	.	transcript_id "Ledus.S3G096900.t1"; gene_id "Ledus.S3G096900"
Ledus.S3	AUGUSTUS	stop_codon	7404781	7404783	.	-	0	transcript_id "Ledus.S3G096900.t1"; gene_id "Ledus.S3G096900"
Ledus.S3	AUGUSTUS	CDS	7404784	7406046	1	-	0	transcript_id "Ledus.S3G096900.t1"; gene_id "Ledus.S3G096900"
Ledus.S3	AUGUSTUS	exon	7404784	7406046	.	-	.	transcript_id "Ledus.S3G096900.t1"; gene_id "Ledus.S3G096900"
Ledus.S3	AUGUSTUS	intron	7406047	7406839	.	-	.	transcript_id "Ledus.S3G096900.t1"; gene_id "Ledus.S3G096900"
Ledus.S3	AUGUSTUS	CDS	7406840	7408167	1	-	2	transcript_id "Ledus.S3G096900.t1"; gene_id "Ledus.S3G096900"
Ledus.S3	AUGUSTUS	exon	7406840	7408167	.	-	.	transcript_id "Ledus.S3G096900.t1"; gene_id "Ledus.S3G096900"
Ledus.S3	AUGUSTUS	intron	7408168	7408255	.	-	.	transcript_id "Ledus.S3G096900.t1"; gene_id "Ledus.S3G096900"
Ledus.S3	AUGUSTUS	CDS	7408256	7409357	0.98	-	0	transcript_id "Ledus.S3G096900.t1"; gene_id "Ledus.S3G096900"
Ledus.S3	AUGUSTUS	exon	7408256	7409357	.	-	.	transcript_id "Ledus.S3G096900.t1"; gene_id "Ledus.S3G096900"
Ledus.S3	AUGUSTUS	start_codon	7409355	7409357	.	-	0	transcript_id "Ledus.S3G096900.t1"; gene_id "Ledus.S3G096900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3243.t1 is derived from g678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7086598	7087392	.	-	.	Ledus.S1G066400
Ledus.S1	AUGUSTUS	transcript	7086598	7087392	.	-	.	transcript_id "Ledus.S1G066400.t1"; gene_id "Ledus.S1G066400"
Ledus.S1	AUGUSTUS	stop_codon	7086595	7086597	.	-	0	transcript_id "Ledus.S1G066400.t1"; gene_id "Ledus.S1G066400"
Ledus.S1	AUGUSTUS	CDS	7086598	7087392	0.53	-	0	transcript_id "Ledus.S1G066400.t1"; gene_id "Ledus.S1G066400"
Ledus.S1	AUGUSTUS	exon	7086598	7087392	.	-	.	transcript_id "Ledus.S1G066400.t1"; gene_id "Ledus.S1G066400"
Ledus.S1	AUGUSTUS	start_codon	7087390	7087392	.	-	0	transcript_id "Ledus.S1G066400.t1"; gene_id "Ledus.S1G066400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11172.t1 is derived from g4790.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2357808	2360652	.	+	.	Ledus.S4G032800
Ledus.S4	AUGUSTUS	transcript	2357808	2360652	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	start_codon	2357808	2357810	.	+	0	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	CDS	2357808	2358543	0.64	+	0	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	exon	2357808	2358543	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	intron	2358544	2358732	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	CDS	2358733	2358932	1	+	2	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	exon	2358733	2358932	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	intron	2358933	2359057	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	CDS	2359058	2359238	1	+	0	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	exon	2359058	2359238	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	intron	2359239	2359341	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	CDS	2359342	2359533	1	+	2	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	exon	2359342	2359533	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	intron	2359534	2359622	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	CDS	2359623	2359855	1	+	2	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	exon	2359623	2359855	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	intron	2359856	2359999	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	CDS	2360000	2360101	1	+	0	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	exon	2360000	2360101	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	intron	2360102	2360196	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	CDS	2360197	2360247	1	+	0	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	exon	2360197	2360247	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	intron	2360248	2360339	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	CDS	2360340	2360444	1	+	0	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	exon	2360340	2360444	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	intron	2360445	2360550	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	CDS	2360551	2360652	0.96	+	0	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	exon	2360551	2360652	.	+	.	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
Ledus.S4	AUGUSTUS	stop_codon	2360653	2360655	.	+	0	transcript_id "Ledus.S4G032800.t1"; gene_id "Ledus.S4G032800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2830.t1 is derived from g264.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3992078	3992965	.	+	.	Ledus.S1G025100
Ledus.S1	AUGUSTUS	transcript	3992078	3992965	.	+	.	transcript_id "Ledus.S1G025100.t1"; gene_id "Ledus.S1G025100"
Ledus.S1	AUGUSTUS	start_codon	3992078	3992080	.	+	0	transcript_id "Ledus.S1G025100.t1"; gene_id "Ledus.S1G025100"
Ledus.S1	AUGUSTUS	CDS	3992078	3992093	0.97	+	0	transcript_id "Ledus.S1G025100.t1"; gene_id "Ledus.S1G025100"
Ledus.S1	AUGUSTUS	exon	3992078	3992093	.	+	.	transcript_id "Ledus.S1G025100.t1"; gene_id "Ledus.S1G025100"
Ledus.S1	AUGUSTUS	intron	3992094	3992290	.	+	.	transcript_id "Ledus.S1G025100.t1"; gene_id "Ledus.S1G025100"
Ledus.S1	AUGUSTUS	CDS	3992291	3992645	0.97	+	2	transcript_id "Ledus.S1G025100.t1"; gene_id "Ledus.S1G025100"
Ledus.S1	AUGUSTUS	exon	3992291	3992645	.	+	.	transcript_id "Ledus.S1G025100.t1"; gene_id "Ledus.S1G025100"
Ledus.S1	AUGUSTUS	intron	3992646	3992883	.	+	.	transcript_id "Ledus.S1G025100.t1"; gene_id "Ledus.S1G025100"
Ledus.S1	AUGUSTUS	CDS	3992884	3992965	1	+	1	transcript_id "Ledus.S1G025100.t1"; gene_id "Ledus.S1G025100"
Ledus.S1	AUGUSTUS	exon	3992884	3992965	.	+	.	transcript_id "Ledus.S1G025100.t1"; gene_id "Ledus.S1G025100"
Ledus.S1	AUGUSTUS	stop_codon	3992966	3992968	.	+	0	transcript_id "Ledus.S1G025100.t1"; gene_id "Ledus.S1G025100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10905.t1 is derived from g4523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	392735	395628	.	+	.	Ledus.S4G006100
Ledus.S4	AUGUSTUS	transcript	392735	395628	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	start_codon	392735	392737	.	+	0	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	392735	392943	1	+	0	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	392735	392943	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	392944	393017	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393018	393142	1	+	1	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393018	393142	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393143	393226	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393227	393351	1	+	2	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393227	393351	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393352	393446	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393447	393630	1	+	0	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393447	393630	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393631	393713	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393714	393800	1	+	2	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393714	393800	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393801	393900	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393901	393968	0.95	+	2	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393901	393968	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393969	394096	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394097	394315	0.88	+	0	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394097	394315	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	394316	394408	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394409	394495	0.86	+	0	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394409	394495	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	394496	394605	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394606	394671	1	+	0	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394606	394671	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	394672	394762	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394763	394825	1	+	0	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394763	394825	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	394826	394904	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394905	395084	1	+	0	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394905	395084	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	395085	395183	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	395184	395240	1	+	0	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	395184	395240	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	395241	395319	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	395320	395374	1	+	0	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	395320	395374	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	395375	395452	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	395453	395628	1	+	2	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	395453	395628	.	+	.	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	stop_codon	395629	395631	.	+	0	transcript_id "Ledus.S4G006100.t1"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	transcript	392735	395628	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	start_codon	392735	392737	.	+	0	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	392735	392943	1	+	0	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	392735	392943	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	392944	393017	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393018	393142	1	+	1	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393018	393142	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393143	393226	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393227	393351	1	+	2	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393227	393351	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393352	393446	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393447	393630	1	+	0	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393447	393630	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393631	393713	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393714	393800	1	+	2	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393714	393800	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393801	393900	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393901	393968	0.99	+	2	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393901	393968	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393969	394105	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394106	394315	0.57	+	0	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394106	394315	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	394316	394396	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394397	394495	0.9	+	0	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394397	394495	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	394496	394605	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394606	394671	1	+	0	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394606	394671	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	394672	394762	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394763	394825	1	+	0	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394763	394825	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	394826	394904	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394905	395084	1	+	0	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394905	395084	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	395085	395183	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	395184	395240	1	+	0	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	395184	395240	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	395241	395319	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	395320	395374	1	+	0	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	395320	395374	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	395375	395452	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	395453	395628	1	+	2	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	395453	395628	.	+	.	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	stop_codon	395629	395631	.	+	0	transcript_id "Ledus.S4G006100.t2"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	transcript	392735	395628	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	start_codon	392735	392737	.	+	0	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	392735	392943	1	+	0	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	392735	392943	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	392944	393017	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393018	393142	1	+	1	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393018	393142	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393143	393226	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393227	393351	1	+	2	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393227	393351	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393352	393446	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393447	393630	1	+	0	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393447	393630	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393631	393713	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393714	393800	1	+	2	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393714	393800	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393801	393900	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	393901	393968	0.98	+	2	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	393901	393968	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	393969	394105	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394106	394315	0.51	+	0	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394106	394315	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	394316	394408	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394409	394495	0.88	+	0	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394409	394495	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	394496	394605	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394606	394671	1	+	0	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394606	394671	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	394672	394762	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394763	394825	1	+	0	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394763	394825	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	394826	394904	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	394905	395084	1	+	0	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	394905	395084	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	395085	395183	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	395184	395240	1	+	0	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	395184	395240	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	395241	395319	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	395320	395374	1	+	0	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	395320	395374	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	intron	395375	395452	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	CDS	395453	395628	1	+	2	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	exon	395453	395628	.	+	.	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
Ledus.S4	AUGUSTUS	stop_codon	395629	395631	.	+	0	transcript_id "Ledus.S4G006100.t3"; gene_id "Ledus.S4G006100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4579.t1 is derived from g2016.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17860330	17862829	.	-	.	Ledus.S1G200000
Ledus.S1	AUGUSTUS	transcript	17860330	17862829	.	-	.	transcript_id "Ledus.S1G200000.t1"; gene_id "Ledus.S1G200000"
Ledus.S1	AUGUSTUS	stop_codon	17860327	17860329	.	-	0	transcript_id "Ledus.S1G200000.t1"; gene_id "Ledus.S1G200000"
Ledus.S1	AUGUSTUS	CDS	17860330	17861720	0.95	-	2	transcript_id "Ledus.S1G200000.t1"; gene_id "Ledus.S1G200000"
Ledus.S1	AUGUSTUS	exon	17860330	17861720	.	-	.	transcript_id "Ledus.S1G200000.t1"; gene_id "Ledus.S1G200000"
Ledus.S1	AUGUSTUS	intron	17861721	17861808	.	-	.	transcript_id "Ledus.S1G200000.t1"; gene_id "Ledus.S1G200000"
Ledus.S1	AUGUSTUS	CDS	17861809	17862829	0.69	-	0	transcript_id "Ledus.S1G200000.t1"; gene_id "Ledus.S1G200000"
Ledus.S1	AUGUSTUS	exon	17861809	17862829	.	-	.	transcript_id "Ledus.S1G200000.t1"; gene_id "Ledus.S1G200000"
Ledus.S1	AUGUSTUS	start_codon	17862827	17862829	.	-	0	transcript_id "Ledus.S1G200000.t1"; gene_id "Ledus.S1G200000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2634.t1 is derived from g67.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	952661	953310	.	+	.	Ledus.S1G005500
Ledus.S1	AUGUSTUS	transcript	952661	953310	.	+	.	transcript_id "Ledus.S1G005500.t1"; gene_id "Ledus.S1G005500"
Ledus.S1	AUGUSTUS	start_codon	952661	952663	.	+	0	transcript_id "Ledus.S1G005500.t1"; gene_id "Ledus.S1G005500"
Ledus.S1	AUGUSTUS	CDS	952661	952773	0.49	+	0	transcript_id "Ledus.S1G005500.t1"; gene_id "Ledus.S1G005500"
Ledus.S1	AUGUSTUS	exon	952661	952773	.	+	.	transcript_id "Ledus.S1G005500.t1"; gene_id "Ledus.S1G005500"
Ledus.S1	AUGUSTUS	intron	952774	953057	.	+	.	transcript_id "Ledus.S1G005500.t1"; gene_id "Ledus.S1G005500"
Ledus.S1	AUGUSTUS	CDS	953058	953212	0.53	+	1	transcript_id "Ledus.S1G005500.t1"; gene_id "Ledus.S1G005500"
Ledus.S1	AUGUSTUS	exon	953058	953212	.	+	.	transcript_id "Ledus.S1G005500.t1"; gene_id "Ledus.S1G005500"
Ledus.S1	AUGUSTUS	intron	953213	953296	.	+	.	transcript_id "Ledus.S1G005500.t1"; gene_id "Ledus.S1G005500"
Ledus.S1	AUGUSTUS	CDS	953297	953310	1	+	2	transcript_id "Ledus.S1G005500.t1"; gene_id "Ledus.S1G005500"
Ledus.S1	AUGUSTUS	exon	953297	953310	.	+	.	transcript_id "Ledus.S1G005500.t1"; gene_id "Ledus.S1G005500"
Ledus.S1	AUGUSTUS	stop_codon	953311	953313	.	+	0	transcript_id "Ledus.S1G005500.t1"; gene_id "Ledus.S1G005500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5100.t1 is derived from g2539.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21640748	21641289	.	-	.	Ledus.S1G252100
Ledus.S1	AUGUSTUS	transcript	21640748	21641289	.	-	.	transcript_id "Ledus.S1G252100.t1"; gene_id "Ledus.S1G252100"
Ledus.S1	AUGUSTUS	stop_codon	21640745	21640747	.	-	0	transcript_id "Ledus.S1G252100.t1"; gene_id "Ledus.S1G252100"
Ledus.S1	AUGUSTUS	CDS	21640748	21641020	0.55	-	0	transcript_id "Ledus.S1G252100.t1"; gene_id "Ledus.S1G252100"
Ledus.S1	AUGUSTUS	exon	21640748	21641020	.	-	.	transcript_id "Ledus.S1G252100.t1"; gene_id "Ledus.S1G252100"
Ledus.S1	AUGUSTUS	intron	21641021	21641142	.	-	.	transcript_id "Ledus.S1G252100.t1"; gene_id "Ledus.S1G252100"
Ledus.S1	AUGUSTUS	CDS	21641143	21641289	0.5	-	0	transcript_id "Ledus.S1G252100.t1"; gene_id "Ledus.S1G252100"
Ledus.S1	AUGUSTUS	exon	21641143	21641289	.	-	.	transcript_id "Ledus.S1G252100.t1"; gene_id "Ledus.S1G252100"
Ledus.S1	AUGUSTUS	start_codon	21641287	21641289	.	-	0	transcript_id "Ledus.S1G252100.t1"; gene_id "Ledus.S1G252100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2070.t1 is derived from g8933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14450272	14450622	.	-	.	Ledus.S2G195200
Ledus.S2	AUGUSTUS	transcript	14450272	14450622	.	-	.	transcript_id "Ledus.S2G195200.t1"; gene_id "Ledus.S2G195200"
Ledus.S2	AUGUSTUS	stop_codon	14450269	14450271	.	-	0	transcript_id "Ledus.S2G195200.t1"; gene_id "Ledus.S2G195200"
Ledus.S2	AUGUSTUS	CDS	14450272	14450622	0.41	-	0	transcript_id "Ledus.S2G195200.t1"; gene_id "Ledus.S2G195200"
Ledus.S2	AUGUSTUS	exon	14450272	14450622	.	-	.	transcript_id "Ledus.S2G195200.t1"; gene_id "Ledus.S2G195200"
Ledus.S2	AUGUSTUS	start_codon	14450620	14450622	.	-	0	transcript_id "Ledus.S2G195200.t1"; gene_id "Ledus.S2G195200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12360.t1 is derived from g5981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11429978	11430536	.	-	.	Ledus.S4G151600
Ledus.S4	AUGUSTUS	transcript	11429978	11430536	.	-	.	transcript_id "Ledus.S4G151600.t1"; gene_id "Ledus.S4G151600"
Ledus.S4	AUGUSTUS	stop_codon	11429975	11429977	.	-	0	transcript_id "Ledus.S4G151600.t1"; gene_id "Ledus.S4G151600"
Ledus.S4	AUGUSTUS	CDS	11429978	11430249	1	-	2	transcript_id "Ledus.S4G151600.t1"; gene_id "Ledus.S4G151600"
Ledus.S4	AUGUSTUS	exon	11429978	11430249	.	-	.	transcript_id "Ledus.S4G151600.t1"; gene_id "Ledus.S4G151600"
Ledus.S4	AUGUSTUS	intron	11430250	11430340	.	-	.	transcript_id "Ledus.S4G151600.t1"; gene_id "Ledus.S4G151600"
Ledus.S4	AUGUSTUS	CDS	11430341	11430536	0.68	-	0	transcript_id "Ledus.S4G151600.t1"; gene_id "Ledus.S4G151600"
Ledus.S4	AUGUSTUS	exon	11430341	11430536	.	-	.	transcript_id "Ledus.S4G151600.t1"; gene_id "Ledus.S4G151600"
Ledus.S4	AUGUSTUS	start_codon	11430534	11430536	.	-	0	transcript_id "Ledus.S4G151600.t1"; gene_id "Ledus.S4G151600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8532.t1 is derived from g9562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	58114	59250	.	+	.	Ledus.S3G000900
Ledus.S3	AUGUSTUS	transcript	58114	59250	.	+	.	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	start_codon	58114	58116	.	+	0	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	CDS	58114	58235	0.46	+	0	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	exon	58114	58235	.	+	.	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	intron	58236	58316	.	+	.	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	CDS	58317	58431	0.92	+	1	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	exon	58317	58431	.	+	.	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	intron	58432	58504	.	+	.	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	CDS	58505	58573	1	+	0	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	exon	58505	58573	.	+	.	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	intron	58574	58641	.	+	.	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	CDS	58642	58700	1	+	0	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	exon	58642	58700	.	+	.	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	intron	58701	58775	.	+	.	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	CDS	58776	58890	1	+	1	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	exon	58776	58890	.	+	.	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	intron	58891	58980	.	+	.	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	CDS	58981	59250	1	+	0	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	exon	58981	59250	.	+	.	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
Ledus.S3	AUGUSTUS	stop_codon	59251	59253	.	+	0	transcript_id "Ledus.S3G000900.t1"; gene_id "Ledus.S3G000900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10593.t1 is derived from g11623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16282227	16282709	.	-	.	Ledus.S3G207000
Ledus.S3	AUGUSTUS	transcript	16282227	16282709	.	-	.	transcript_id "Ledus.S3G207000.t1"; gene_id "Ledus.S3G207000"
Ledus.S3	AUGUSTUS	stop_codon	16282224	16282226	.	-	0	transcript_id "Ledus.S3G207000.t1"; gene_id "Ledus.S3G207000"
Ledus.S3	AUGUSTUS	CDS	16282227	16282709	0.6	-	0	transcript_id "Ledus.S3G207000.t1"; gene_id "Ledus.S3G207000"
Ledus.S3	AUGUSTUS	exon	16282227	16282709	.	-	.	transcript_id "Ledus.S3G207000.t1"; gene_id "Ledus.S3G207000"
Ledus.S3	AUGUSTUS	start_codon	16282707	16282709	.	-	0	transcript_id "Ledus.S3G207000.t1"; gene_id "Ledus.S3G207000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2267.t1 is derived from g9130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16755899	16758313	.	+	.	Ledus.S2G214900
Ledus.S2	AUGUSTUS	transcript	16755899	16758313	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	start_codon	16755899	16755901	.	+	0	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	CDS	16755899	16755925	1	+	0	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	exon	16755899	16755925	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	intron	16755926	16756090	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	CDS	16756091	16756316	0.87	+	0	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	exon	16756091	16756316	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	intron	16756317	16756429	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	CDS	16756430	16756559	1	+	2	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	exon	16756430	16756559	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	intron	16756560	16756685	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	CDS	16756686	16756797	1	+	1	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	exon	16756686	16756797	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	intron	16756798	16756920	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	CDS	16756921	16757172	1	+	0	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	exon	16756921	16757172	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	intron	16757173	16757317	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	CDS	16757318	16757434	1	+	0	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	exon	16757318	16757434	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	intron	16757435	16757638	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	CDS	16757639	16757746	1	+	0	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	exon	16757639	16757746	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	intron	16757747	16757834	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	CDS	16757835	16757888	1	+	0	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	exon	16757835	16757888	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	intron	16757889	16757975	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	CDS	16757976	16758128	0.98	+	0	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	exon	16757976	16758128	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	intron	16758129	16758256	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	CDS	16758257	16758313	0.56	+	0	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	exon	16758257	16758313	.	+	.	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
Ledus.S2	AUGUSTUS	stop_codon	16758314	16758316	.	+	0	transcript_id "Ledus.S2G214900.t1"; gene_id "Ledus.S2G214900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13029.t1 is derived from g6839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3440744	3441510	.	-	.	Ledus.S6G009100
Ledus.S6	AUGUSTUS	transcript	3440744	3441510	.	-	.	transcript_id "Ledus.S6G009100.t1"; gene_id "Ledus.S6G009100"
Ledus.S6	AUGUSTUS	stop_codon	3440741	3440743	.	-	0	transcript_id "Ledus.S6G009100.t1"; gene_id "Ledus.S6G009100"
Ledus.S6	AUGUSTUS	CDS	3440744	3440823	0.1	-	2	transcript_id "Ledus.S6G009100.t1"; gene_id "Ledus.S6G009100"
Ledus.S6	AUGUSTUS	exon	3440744	3440823	.	-	.	transcript_id "Ledus.S6G009100.t1"; gene_id "Ledus.S6G009100"
Ledus.S6	AUGUSTUS	intron	3440824	3440927	.	-	.	transcript_id "Ledus.S6G009100.t1"; gene_id "Ledus.S6G009100"
Ledus.S6	AUGUSTUS	CDS	3440928	3441510	0.03	-	0	transcript_id "Ledus.S6G009100.t1"; gene_id "Ledus.S6G009100"
Ledus.S6	AUGUSTUS	exon	3440928	3441510	.	-	.	transcript_id "Ledus.S6G009100.t1"; gene_id "Ledus.S6G009100"
Ledus.S6	AUGUSTUS	start_codon	3441508	3441510	.	-	0	transcript_id "Ledus.S6G009100.t1"; gene_id "Ledus.S6G009100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5627.t1 is derived from g3066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25437587	25439634	.	+	.	Ledus.S1G304800
Ledus.S1	AUGUSTUS	transcript	25437587	25439634	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	start_codon	25437587	25437589	.	+	0	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	CDS	25437587	25437964	0.33	+	0	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	exon	25437587	25437964	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	intron	25437965	25438051	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	CDS	25438052	25438318	0.54	+	0	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	exon	25438052	25438318	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	intron	25438319	25438403	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	CDS	25438404	25438498	1	+	0	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	exon	25438404	25438498	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	intron	25438499	25438599	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	CDS	25438600	25438660	1	+	1	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	exon	25438600	25438660	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	intron	25438661	25438751	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	CDS	25438752	25438841	0.96	+	0	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	exon	25438752	25438841	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	intron	25438842	25438968	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	CDS	25438969	25439031	1	+	0	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	exon	25438969	25439031	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	intron	25439032	25439207	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	CDS	25439208	25439296	1	+	0	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	exon	25439208	25439296	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	intron	25439297	25439390	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	CDS	25439391	25439486	0.61	+	1	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	exon	25439391	25439486	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	intron	25439487	25439600	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	CDS	25439601	25439634	0.58	+	1	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	exon	25439601	25439634	.	+	.	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
Ledus.S1	AUGUSTUS	stop_codon	25439635	25439637	.	+	0	transcript_id "Ledus.S1G304800.t1"; gene_id "Ledus.S1G304800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5181.t1 is derived from g2620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22178872	22181784	.	-	.	Ledus.S1G260200
Ledus.S1	AUGUSTUS	transcript	22178872	22181784	.	-	.	transcript_id "Ledus.S1G260200.t1"; gene_id "Ledus.S1G260200"
Ledus.S1	AUGUSTUS	stop_codon	22178869	22178871	.	-	0	transcript_id "Ledus.S1G260200.t1"; gene_id "Ledus.S1G260200"
Ledus.S1	AUGUSTUS	CDS	22178872	22181784	0.86	-	0	transcript_id "Ledus.S1G260200.t1"; gene_id "Ledus.S1G260200"
Ledus.S1	AUGUSTUS	exon	22178872	22181784	.	-	.	transcript_id "Ledus.S1G260200.t1"; gene_id "Ledus.S1G260200"
Ledus.S1	AUGUSTUS	start_codon	22181782	22181784	.	-	0	transcript_id "Ledus.S1G260200.t1"; gene_id "Ledus.S1G260200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg810.t1 is derived from g7671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5246410	5246634	.	+	.	Ledus.S2G069200
Ledus.S2	AUGUSTUS	transcript	5246410	5246634	.	+	.	transcript_id "Ledus.S2G069200.t1"; gene_id "Ledus.S2G069200"
Ledus.S2	AUGUSTUS	start_codon	5246410	5246412	.	+	0	transcript_id "Ledus.S2G069200.t1"; gene_id "Ledus.S2G069200"
Ledus.S2	AUGUSTUS	CDS	5246410	5246634	0.65	+	0	transcript_id "Ledus.S2G069200.t1"; gene_id "Ledus.S2G069200"
Ledus.S2	AUGUSTUS	exon	5246410	5246634	.	+	.	transcript_id "Ledus.S2G069200.t1"; gene_id "Ledus.S2G069200"
Ledus.S2	AUGUSTUS	stop_codon	5246635	5246637	.	+	0	transcript_id "Ledus.S2G069200.t1"; gene_id "Ledus.S2G069200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11311.t1 is derived from g4929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3500274	3501875	.	+	.	Ledus.S4G046700
Ledus.S4	AUGUSTUS	transcript	3500274	3501875	.	+	.	transcript_id "Ledus.S4G046700.t1"; gene_id "Ledus.S4G046700"
Ledus.S4	AUGUSTUS	start_codon	3500274	3500276	.	+	0	transcript_id "Ledus.S4G046700.t1"; gene_id "Ledus.S4G046700"
Ledus.S4	AUGUSTUS	CDS	3500274	3501875	0.52	+	0	transcript_id "Ledus.S4G046700.t1"; gene_id "Ledus.S4G046700"
Ledus.S4	AUGUSTUS	exon	3500274	3501875	.	+	.	transcript_id "Ledus.S4G046700.t1"; gene_id "Ledus.S4G046700"
Ledus.S4	AUGUSTUS	stop_codon	3501876	3501878	.	+	0	transcript_id "Ledus.S4G046700.t1"; gene_id "Ledus.S4G046700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7303.t1 is derived from g11974.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	884658	887405	.	+	.	Ledus.S5G008100
Ledus.S5	AUGUSTUS	transcript	884658	887405	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	start_codon	884658	884660	.	+	0	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	884658	884739	0.92	+	0	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	884658	884739	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	884740	884827	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	884828	885005	1	+	2	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	884828	885005	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	885006	885084	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	885085	885167	1	+	1	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	885085	885167	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	885168	885260	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	885261	885361	1	+	2	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	885261	885361	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	885362	885442	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	885443	885538	1	+	0	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	885443	885538	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	885539	885613	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	885614	885667	1	+	0	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	885614	885667	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	885668	885748	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	885749	885897	1	+	0	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	885749	885897	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	885898	886000	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	886001	886118	0.91	+	1	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	886001	886118	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	886119	886231	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	886232	886328	1	+	0	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	886232	886328	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	886329	886398	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	886399	886678	0.16	+	2	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	886399	886678	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	886679	887045	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	887046	887185	0.45	+	1	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	887046	887185	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	887186	887403	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	887404	887405	0.95	+	2	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	887404	887405	.	+	.	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	stop_codon	887406	887408	.	+	0	transcript_id "Ledus.S5G008100.t1"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	transcript	884658	887405	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	start_codon	884658	884660	.	+	0	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	884658	884739	0.89	+	0	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	884658	884739	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	884740	884827	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	884828	885005	1	+	2	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	884828	885005	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	885006	885084	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	885085	885167	1	+	1	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	885085	885167	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	885168	885335	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	885336	885361	0.6	+	2	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	885336	885361	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	885362	885442	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	885443	885538	1	+	0	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	885443	885538	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	885539	885613	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	885614	885667	1	+	0	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	885614	885667	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	885668	885748	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	885749	885897	1	+	0	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	885749	885897	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	885898	886000	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	886001	886118	0.9	+	1	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	886001	886118	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	886119	886231	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	886232	886328	1	+	0	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	886232	886328	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	886329	886398	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	886399	886678	0.15	+	2	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	886399	886678	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	886679	887045	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	887046	887185	0.37	+	1	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	887046	887185	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	intron	887186	887403	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	CDS	887404	887405	0.94	+	2	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	exon	887404	887405	.	+	.	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
Ledus.S5	AUGUSTUS	stop_codon	887406	887408	.	+	0	transcript_id "Ledus.S5G008100.t2"; gene_id "Ledus.S5G008100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10947.t1 is derived from g4565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	771120	771323	.	-	.	Ledus.S4G010300
Ledus.S4	AUGUSTUS	transcript	771120	771323	.	-	.	transcript_id "Ledus.S4G010300.t1"; gene_id "Ledus.S4G010300"
Ledus.S4	AUGUSTUS	stop_codon	771117	771119	.	-	0	transcript_id "Ledus.S4G010300.t1"; gene_id "Ledus.S4G010300"
Ledus.S4	AUGUSTUS	CDS	771120	771323	0.91	-	0	transcript_id "Ledus.S4G010300.t1"; gene_id "Ledus.S4G010300"
Ledus.S4	AUGUSTUS	exon	771120	771323	.	-	.	transcript_id "Ledus.S4G010300.t1"; gene_id "Ledus.S4G010300"
Ledus.S4	AUGUSTUS	start_codon	771321	771323	.	-	0	transcript_id "Ledus.S4G010300.t1"; gene_id "Ledus.S4G010300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12042.t1 is derived from g5661.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9149817	9150870	.	+	.	Ledus.S4G119800
Ledus.S4	AUGUSTUS	transcript	9149817	9150870	.	+	.	transcript_id "Ledus.S4G119800.t1"; gene_id "Ledus.S4G119800"
Ledus.S4	AUGUSTUS	start_codon	9149817	9149819	.	+	0	transcript_id "Ledus.S4G119800.t1"; gene_id "Ledus.S4G119800"
Ledus.S4	AUGUSTUS	CDS	9149817	9150145	1	+	0	transcript_id "Ledus.S4G119800.t1"; gene_id "Ledus.S4G119800"
Ledus.S4	AUGUSTUS	exon	9149817	9150145	.	+	.	transcript_id "Ledus.S4G119800.t1"; gene_id "Ledus.S4G119800"
Ledus.S4	AUGUSTUS	intron	9150146	9150299	.	+	.	transcript_id "Ledus.S4G119800.t1"; gene_id "Ledus.S4G119800"
Ledus.S4	AUGUSTUS	CDS	9150300	9150870	1	+	1	transcript_id "Ledus.S4G119800.t1"; gene_id "Ledus.S4G119800"
Ledus.S4	AUGUSTUS	exon	9150300	9150870	.	+	.	transcript_id "Ledus.S4G119800.t1"; gene_id "Ledus.S4G119800"
Ledus.S4	AUGUSTUS	stop_codon	9150871	9150873	.	+	0	transcript_id "Ledus.S4G119800.t1"; gene_id "Ledus.S4G119800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9456.t1 is derived from g10486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7130528	7131374	.	+	.	Ledus.S3G093300
Ledus.S3	AUGUSTUS	transcript	7130528	7131299	.	+	.	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	start_codon	7130528	7130530	.	+	0	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	CDS	7130528	7130531	1	+	0	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	exon	7130528	7130531	.	+	.	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	intron	7130532	7130688	.	+	.	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	CDS	7130689	7130750	1	+	2	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	exon	7130689	7130750	.	+	.	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	intron	7130751	7130848	.	+	.	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	CDS	7130849	7130983	0.99	+	0	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	exon	7130849	7130983	.	+	.	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	intron	7130984	7131095	.	+	.	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	CDS	7131096	7131299	0.99	+	0	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	exon	7131096	7131299	.	+	.	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	stop_codon	7131300	7131302	.	+	0	transcript_id "Ledus.S3G093300.t1"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	transcript	7130528	7131374	.	+	.	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	start_codon	7130528	7130530	.	+	0	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	CDS	7130528	7130531	1	+	0	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	exon	7130528	7130531	.	+	.	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	intron	7130532	7130688	.	+	.	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	CDS	7130689	7130750	1	+	2	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	exon	7130689	7130750	.	+	.	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	intron	7130751	7130848	.	+	.	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	CDS	7130849	7130918	0.86	+	0	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	exon	7130849	7130918	.	+	.	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	intron	7130919	7131095	.	+	.	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	CDS	7131096	7131189	0.78	+	2	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	exon	7131096	7131189	.	+	.	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	intron	7131190	7131340	.	+	.	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	CDS	7131341	7131374	0.78	+	1	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	exon	7131341	7131374	.	+	.	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
Ledus.S3	AUGUSTUS	stop_codon	7131375	7131377	.	+	0	transcript_id "Ledus.S3G093300.t2"; gene_id "Ledus.S3G093300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10767.t1 is derived from g11799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17553165	17559230	.	+	.	Ledus.S3G224400
Ledus.S3	AUGUSTUS	transcript	17553165	17559230	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	start_codon	17553165	17553167	.	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17553165	17553458	0.47	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17553165	17553458	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17553459	17553585	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17553586	17553705	0.73	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17553586	17553705	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17553706	17553817	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17553818	17553864	1	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17553818	17553864	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17553865	17554033	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17554034	17554100	0.96	+	1	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17554034	17554100	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17554101	17554190	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17554191	17554274	0.8	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17554191	17554274	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17554275	17554479	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17554480	17554616	0.54	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17554480	17554616	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17554617	17554719	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17554720	17554821	0.98	+	1	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17554720	17554821	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17554822	17554953	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17554954	17555095	0.96	+	1	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17554954	17555095	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17555096	17555189	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17555190	17555736	0.85	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17555190	17555736	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17555737	17555820	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17555821	17556041	1	+	2	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17555821	17556041	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17556042	17556137	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17556138	17556392	1	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17556138	17556392	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17556393	17556477	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17556478	17556687	0.61	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17556478	17556687	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17556688	17556830	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17556831	17557205	0.76	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17556831	17557205	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17557206	17557286	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17557287	17557648	0.64	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17557287	17557648	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17557649	17557743	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17557744	17557915	1	+	1	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17557744	17557915	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17557916	17557995	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17557996	17558868	0.67	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17557996	17558868	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17558869	17558963	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17558964	17559016	0.96	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17558964	17559016	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	intron	17559017	17559160	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	CDS	17559161	17559230	0.97	+	1	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	exon	17559161	17559230	.	+	.	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
Ledus.S3	AUGUSTUS	stop_codon	17559231	17559233	.	+	0	transcript_id "Ledus.S3G224400.t1"; gene_id "Ledus.S3G224400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6440.t1 is derived from g3883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31266484	31267092	.	+	.	Ledus.S1G386100
Ledus.S1	AUGUSTUS	transcript	31266484	31267092	.	+	.	transcript_id "Ledus.S1G386100.t1"; gene_id "Ledus.S1G386100"
Ledus.S1	AUGUSTUS	start_codon	31266484	31266486	.	+	0	transcript_id "Ledus.S1G386100.t1"; gene_id "Ledus.S1G386100"
Ledus.S1	AUGUSTUS	CDS	31266484	31267092	0.96	+	0	transcript_id "Ledus.S1G386100.t1"; gene_id "Ledus.S1G386100"
Ledus.S1	AUGUSTUS	exon	31266484	31267092	.	+	.	transcript_id "Ledus.S1G386100.t1"; gene_id "Ledus.S1G386100"
Ledus.S1	AUGUSTUS	stop_codon	31267093	31267095	.	+	0	transcript_id "Ledus.S1G386100.t1"; gene_id "Ledus.S1G386100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12252.t1 is derived from g5872.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10641920	10642730	.	-	.	Ledus.S4G140800
Ledus.S4	AUGUSTUS	transcript	10641920	10642730	.	-	.	transcript_id "Ledus.S4G140800.t1"; gene_id "Ledus.S4G140800"
Ledus.S4	AUGUSTUS	stop_codon	10641917	10641919	.	-	0	transcript_id "Ledus.S4G140800.t1"; gene_id "Ledus.S4G140800"
Ledus.S4	AUGUSTUS	CDS	10641920	10642408	1	-	0	transcript_id "Ledus.S4G140800.t1"; gene_id "Ledus.S4G140800"
Ledus.S4	AUGUSTUS	exon	10641920	10642408	.	-	.	transcript_id "Ledus.S4G140800.t1"; gene_id "Ledus.S4G140800"
Ledus.S4	AUGUSTUS	intron	10642409	10642565	.	-	.	transcript_id "Ledus.S4G140800.t1"; gene_id "Ledus.S4G140800"
Ledus.S4	AUGUSTUS	CDS	10642566	10642730	0.7	-	0	transcript_id "Ledus.S4G140800.t1"; gene_id "Ledus.S4G140800"
Ledus.S4	AUGUSTUS	exon	10642566	10642730	.	-	.	transcript_id "Ledus.S4G140800.t1"; gene_id "Ledus.S4G140800"
Ledus.S4	AUGUSTUS	start_codon	10642728	10642730	.	-	0	transcript_id "Ledus.S4G140800.t1"; gene_id "Ledus.S4G140800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8791.t1 is derived from g9821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2008179	2008391	.	-	.	Ledus.S3G026800
Ledus.S3	AUGUSTUS	transcript	2008179	2008391	.	-	.	transcript_id "Ledus.S3G026800.t1"; gene_id "Ledus.S3G026800"
Ledus.S3	AUGUSTUS	stop_codon	2008176	2008178	.	-	0	transcript_id "Ledus.S3G026800.t1"; gene_id "Ledus.S3G026800"
Ledus.S3	AUGUSTUS	CDS	2008179	2008391	0.84	-	0	transcript_id "Ledus.S3G026800.t1"; gene_id "Ledus.S3G026800"
Ledus.S3	AUGUSTUS	exon	2008179	2008391	.	-	.	transcript_id "Ledus.S3G026800.t1"; gene_id "Ledus.S3G026800"
Ledus.S3	AUGUSTUS	start_codon	2008389	2008391	.	-	0	transcript_id "Ledus.S3G026800.t1"; gene_id "Ledus.S3G026800"
# This transcript jg274.t2 is derived from g7135.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg275.t1 is derived from g7136.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1339450	1340282	.	+	.	Ledus.S2G015700
Ledus.S2	AUGUSTUS	transcript	1339450	1340282	.	+	.	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	start_codon	1339450	1339452	.	+	0	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	CDS	1339450	1339509	0.55	+	0	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	exon	1339450	1339509	.	+	.	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	intron	1339510	1339587	.	+	.	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	CDS	1339588	1339799	0.52	+	0	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	exon	1339588	1339799	.	+	.	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	intron	1339800	1339926	.	+	.	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	CDS	1339927	1340013	0.63	+	1	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	exon	1339927	1340013	.	+	.	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	intron	1340014	1340137	.	+	.	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	CDS	1340138	1340282	0.55	+	1	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	exon	1340138	1340282	.	+	.	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
Ledus.S2	AUGUSTUS	stop_codon	1340283	1340285	.	+	0	transcript_id "Ledus.S2G015700.t1"; gene_id "Ledus.S2G015700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6629.t1 is derived from g4072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32793468	32797625	.	+	.	Ledus.S1G405000
Ledus.S1	AUGUSTUS	transcript	32793468	32797625	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	start_codon	32793468	32793470	.	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32793468	32793491	0.83	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32793468	32793491	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32793492	32793629	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32793630	32793708	1	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32793630	32793708	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32793709	32793791	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32793792	32793892	1	+	2	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32793792	32793892	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32793893	32793983	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32793984	32794080	1	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32793984	32794080	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32794081	32794174	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32794175	32794253	1	+	2	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32794175	32794253	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32794254	32794328	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32794329	32794439	1	+	1	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32794329	32794439	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32794440	32794529	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32794530	32794623	1	+	1	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32794530	32794623	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32794624	32794705	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32794706	32794798	1	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32794706	32794798	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32794799	32794887	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32794888	32794958	1	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32794888	32794958	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32794959	32795072	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32795073	32795097	0.59	+	1	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32795073	32795097	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32795098	32795203	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32795204	32795271	0.58	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32795204	32795271	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32795272	32795393	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32795394	32795463	0.61	+	1	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32795394	32795463	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32795464	32795619	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32795620	32795721	0.96	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32795620	32795721	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32795722	32795822	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32795823	32795945	0.97	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32795823	32795945	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32795946	32796067	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32796068	32796190	0.77	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32796068	32796190	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32796191	32796294	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32796295	32796393	1	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32796295	32796393	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32796394	32796480	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32796481	32796967	0.99	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32796481	32796967	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	intron	32796968	32797527	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	CDS	32797528	32797625	1	+	2	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	exon	32797528	32797625	.	+	.	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
Ledus.S1	AUGUSTUS	stop_codon	32797626	32797628	.	+	0	transcript_id "Ledus.S1G405000.t1"; gene_id "Ledus.S1G405000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4195.t1 is derived from g1631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15318134	15318862	.	+	.	Ledus.S1G161600
Ledus.S1	AUGUSTUS	transcript	15318134	15318862	.	+	.	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	start_codon	15318134	15318136	.	+	0	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	CDS	15318134	15318176	0.5	+	0	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	exon	15318134	15318176	.	+	.	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	intron	15318177	15318489	.	+	.	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	CDS	15318490	15318545	1	+	2	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	exon	15318490	15318545	.	+	.	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	intron	15318546	15318646	.	+	.	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	CDS	15318647	15318688	1	+	0	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	exon	15318647	15318688	.	+	.	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	intron	15318689	15318784	.	+	.	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	CDS	15318785	15318862	1	+	0	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	exon	15318785	15318862	.	+	.	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
Ledus.S1	AUGUSTUS	stop_codon	15318863	15318865	.	+	0	transcript_id "Ledus.S1G161600.t1"; gene_id "Ledus.S1G161600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2596.t1 is derived from g29.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	191960	194003	.	+	.	Ledus.S1G001700
Ledus.S1	AUGUSTUS	transcript	191960	194003	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	start_codon	191960	191962	.	+	0	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	CDS	191960	192136	0.45	+	0	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	exon	191960	192136	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	intron	192137	192296	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	CDS	192297	192407	1	+	0	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	exon	192297	192407	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	intron	192408	192484	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	CDS	192485	192599	1	+	0	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	exon	192485	192599	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	intron	192600	192699	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	CDS	192700	192852	0.85	+	2	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	exon	192700	192852	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	intron	192853	192969	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	CDS	192970	193007	0.83	+	2	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	exon	192970	193007	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	intron	193008	193113	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	CDS	193114	193203	0.98	+	0	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	exon	193114	193203	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	intron	193204	193291	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	CDS	193292	193375	1	+	0	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	exon	193292	193375	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	intron	193376	193449	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	CDS	193450	193605	1	+	0	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	exon	193450	193605	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	intron	193606	193832	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	CDS	193833	194003	1	+	0	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	exon	193833	194003	.	+	.	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
Ledus.S1	AUGUSTUS	stop_codon	194004	194006	.	+	0	transcript_id "Ledus.S1G001700.t1"; gene_id "Ledus.S1G001700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6499.t1 is derived from g3942.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31644905	31645639	.	+	.	Ledus.S1G392000
Ledus.S1	AUGUSTUS	transcript	31644905	31645639	.	+	.	transcript_id "Ledus.S1G392000.t1"; gene_id "Ledus.S1G392000"
Ledus.S1	AUGUSTUS	start_codon	31644905	31644907	.	+	0	transcript_id "Ledus.S1G392000.t1"; gene_id "Ledus.S1G392000"
Ledus.S1	AUGUSTUS	CDS	31644905	31645121	1	+	0	transcript_id "Ledus.S1G392000.t1"; gene_id "Ledus.S1G392000"
Ledus.S1	AUGUSTUS	exon	31644905	31645121	.	+	.	transcript_id "Ledus.S1G392000.t1"; gene_id "Ledus.S1G392000"
Ledus.S1	AUGUSTUS	intron	31645122	31645211	.	+	.	transcript_id "Ledus.S1G392000.t1"; gene_id "Ledus.S1G392000"
Ledus.S1	AUGUSTUS	CDS	31645212	31645639	1	+	2	transcript_id "Ledus.S1G392000.t1"; gene_id "Ledus.S1G392000"
Ledus.S1	AUGUSTUS	exon	31645212	31645639	.	+	.	transcript_id "Ledus.S1G392000.t1"; gene_id "Ledus.S1G392000"
Ledus.S1	AUGUSTUS	stop_codon	31645640	31645642	.	+	0	transcript_id "Ledus.S1G392000.t1"; gene_id "Ledus.S1G392000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7547.t1 is derived from g12218.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3832281	3832562	.	-	.	Ledus.S5G032500
Ledus.S5	AUGUSTUS	transcript	3832281	3832562	.	-	.	transcript_id "Ledus.S5G032500.t1"; gene_id "Ledus.S5G032500"
Ledus.S5	AUGUSTUS	stop_codon	3832278	3832280	.	-	0	transcript_id "Ledus.S5G032500.t1"; gene_id "Ledus.S5G032500"
Ledus.S5	AUGUSTUS	CDS	3832281	3832562	1	-	0	transcript_id "Ledus.S5G032500.t1"; gene_id "Ledus.S5G032500"
Ledus.S5	AUGUSTUS	exon	3832281	3832562	.	-	.	transcript_id "Ledus.S5G032500.t1"; gene_id "Ledus.S5G032500"
Ledus.S5	AUGUSTUS	start_codon	3832560	3832562	.	-	0	transcript_id "Ledus.S5G032500.t1"; gene_id "Ledus.S5G032500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1774.t1 is derived from g8637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12432357	12434709	.	-	.	Ledus.S2G165600
Ledus.S2	AUGUSTUS	transcript	12432357	12434709	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	stop_codon	12432354	12432356	.	-	0	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	CDS	12432357	12432491	0.81	-	0	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	exon	12432357	12432491	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	intron	12432492	12432563	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	CDS	12432564	12432656	1	-	0	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	exon	12432564	12432656	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	intron	12432657	12432755	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	CDS	12432756	12432827	1	-	0	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	exon	12432756	12432827	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	intron	12432828	12433018	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	CDS	12433019	12433088	1	-	1	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	exon	12433019	12433088	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	intron	12433089	12433165	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	CDS	12433166	12433213	1	-	1	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	exon	12433166	12433213	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	intron	12433214	12433363	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	CDS	12433364	12433462	1	-	1	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	exon	12433364	12433462	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	intron	12433463	12433643	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	CDS	12433644	12433708	1	-	0	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	exon	12433644	12433708	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	intron	12433709	12434086	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	CDS	12434087	12434216	0.66	-	1	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	exon	12434087	12434216	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	intron	12434217	12434316	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	CDS	12434317	12434322	0.66	-	1	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	exon	12434317	12434322	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	intron	12434323	12434635	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	CDS	12434636	12434709	0.59	-	0	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	exon	12434636	12434709	.	-	.	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
Ledus.S2	AUGUSTUS	start_codon	12434707	12434709	.	-	0	transcript_id "Ledus.S2G165600.t1"; gene_id "Ledus.S2G165600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9204.t1 is derived from g10234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5332639	5333586	.	+	.	Ledus.S3G068100
Ledus.S3	AUGUSTUS	transcript	5332639	5333586	.	+	.	transcript_id "Ledus.S3G068100.t1"; gene_id "Ledus.S3G068100"
Ledus.S3	AUGUSTUS	start_codon	5332639	5332641	.	+	0	transcript_id "Ledus.S3G068100.t1"; gene_id "Ledus.S3G068100"
Ledus.S3	AUGUSTUS	CDS	5332639	5332725	0.9	+	0	transcript_id "Ledus.S3G068100.t1"; gene_id "Ledus.S3G068100"
Ledus.S3	AUGUSTUS	exon	5332639	5332725	.	+	.	transcript_id "Ledus.S3G068100.t1"; gene_id "Ledus.S3G068100"
Ledus.S3	AUGUSTUS	intron	5332726	5332966	.	+	.	transcript_id "Ledus.S3G068100.t1"; gene_id "Ledus.S3G068100"
Ledus.S3	AUGUSTUS	CDS	5332967	5333021	1	+	0	transcript_id "Ledus.S3G068100.t1"; gene_id "Ledus.S3G068100"
Ledus.S3	AUGUSTUS	exon	5332967	5333021	.	+	.	transcript_id "Ledus.S3G068100.t1"; gene_id "Ledus.S3G068100"
Ledus.S3	AUGUSTUS	intron	5333022	5333209	.	+	.	transcript_id "Ledus.S3G068100.t1"; gene_id "Ledus.S3G068100"
Ledus.S3	AUGUSTUS	CDS	5333210	5333586	0.63	+	2	transcript_id "Ledus.S3G068100.t1"; gene_id "Ledus.S3G068100"
Ledus.S3	AUGUSTUS	exon	5333210	5333586	.	+	.	transcript_id "Ledus.S3G068100.t1"; gene_id "Ledus.S3G068100"
Ledus.S3	AUGUSTUS	stop_codon	5333587	5333589	.	+	0	transcript_id "Ledus.S3G068100.t1"; gene_id "Ledus.S3G068100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg743.t1 is derived from g7604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4725865	4726074	.	-	.	Ledus.S2G062500
Ledus.S2	AUGUSTUS	transcript	4725865	4726074	.	-	.	transcript_id "Ledus.S2G062500.t1"; gene_id "Ledus.S2G062500"
Ledus.S2	AUGUSTUS	stop_codon	4725862	4725864	.	-	0	transcript_id "Ledus.S2G062500.t1"; gene_id "Ledus.S2G062500"
Ledus.S2	AUGUSTUS	CDS	4725865	4726074	0.95	-	0	transcript_id "Ledus.S2G062500.t1"; gene_id "Ledus.S2G062500"
Ledus.S2	AUGUSTUS	exon	4725865	4726074	.	-	.	transcript_id "Ledus.S2G062500.t1"; gene_id "Ledus.S2G062500"
Ledus.S2	AUGUSTUS	start_codon	4726072	4726074	.	-	0	transcript_id "Ledus.S2G062500.t1"; gene_id "Ledus.S2G062500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4646.t1 is derived from g2084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18626804	18627873	.	+	.	Ledus.S1G206700
Ledus.S1	AUGUSTUS	transcript	18626804	18627873	.	+	.	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	start_codon	18626804	18626806	.	+	0	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	CDS	18626804	18626938	0.99	+	0	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	exon	18626804	18626938	.	+	.	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	intron	18626939	18627044	.	+	.	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	CDS	18627045	18627224	0.9	+	0	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	exon	18627045	18627224	.	+	.	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	intron	18627225	18627321	.	+	.	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	CDS	18627322	18627448	1	+	0	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	exon	18627322	18627448	.	+	.	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	intron	18627449	18627550	.	+	.	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	CDS	18627551	18627664	1	+	2	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	exon	18627551	18627664	.	+	.	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	intron	18627665	18627760	.	+	.	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	CDS	18627761	18627873	1	+	2	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	exon	18627761	18627873	.	+	.	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
Ledus.S1	AUGUSTUS	stop_codon	18627874	18627876	.	+	0	transcript_id "Ledus.S1G206700.t1"; gene_id "Ledus.S1G206700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8120.t1 is derived from g12791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9218840	9219833	.	+	.	Ledus.S5G089800
Ledus.S5	AUGUSTUS	transcript	9218840	9219833	.	+	.	transcript_id "Ledus.S5G089800.t1"; gene_id "Ledus.S5G089800"
Ledus.S5	AUGUSTUS	start_codon	9218840	9218842	.	+	0	transcript_id "Ledus.S5G089800.t1"; gene_id "Ledus.S5G089800"
Ledus.S5	AUGUSTUS	CDS	9218840	9218880	0.85	+	0	transcript_id "Ledus.S5G089800.t1"; gene_id "Ledus.S5G089800"
Ledus.S5	AUGUSTUS	exon	9218840	9218880	.	+	.	transcript_id "Ledus.S5G089800.t1"; gene_id "Ledus.S5G089800"
Ledus.S5	AUGUSTUS	intron	9218881	9219084	.	+	.	transcript_id "Ledus.S5G089800.t1"; gene_id "Ledus.S5G089800"
Ledus.S5	AUGUSTUS	CDS	9219085	9219358	0.43	+	1	transcript_id "Ledus.S5G089800.t1"; gene_id "Ledus.S5G089800"
Ledus.S5	AUGUSTUS	exon	9219085	9219358	.	+	.	transcript_id "Ledus.S5G089800.t1"; gene_id "Ledus.S5G089800"
Ledus.S5	AUGUSTUS	intron	9219359	9219452	.	+	.	transcript_id "Ledus.S5G089800.t1"; gene_id "Ledus.S5G089800"
Ledus.S5	AUGUSTUS	CDS	9219453	9219833	0.49	+	0	transcript_id "Ledus.S5G089800.t1"; gene_id "Ledus.S5G089800"
Ledus.S5	AUGUSTUS	exon	9219453	9219833	.	+	.	transcript_id "Ledus.S5G089800.t1"; gene_id "Ledus.S5G089800"
Ledus.S5	AUGUSTUS	stop_codon	9219834	9219836	.	+	0	transcript_id "Ledus.S5G089800.t1"; gene_id "Ledus.S5G089800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2984.t1 is derived from g419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5159129	5159881	.	-	.	Ledus.S1G040500
Ledus.S1	AUGUSTUS	transcript	5159129	5159881	.	-	.	transcript_id "Ledus.S1G040500.t1"; gene_id "Ledus.S1G040500"
Ledus.S1	AUGUSTUS	stop_codon	5159126	5159128	.	-	0	transcript_id "Ledus.S1G040500.t1"; gene_id "Ledus.S1G040500"
Ledus.S1	AUGUSTUS	CDS	5159129	5159881	0.97	-	0	transcript_id "Ledus.S1G040500.t1"; gene_id "Ledus.S1G040500"
Ledus.S1	AUGUSTUS	exon	5159129	5159881	.	-	.	transcript_id "Ledus.S1G040500.t1"; gene_id "Ledus.S1G040500"
Ledus.S1	AUGUSTUS	start_codon	5159879	5159881	.	-	0	transcript_id "Ledus.S1G040500.t1"; gene_id "Ledus.S1G040500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3107.t1 is derived from g542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5945971	5946207	.	+	.	Ledus.S1G052800
Ledus.S1	AUGUSTUS	transcript	5945971	5946207	.	+	.	transcript_id "Ledus.S1G052800.t1"; gene_id "Ledus.S1G052800"
Ledus.S1	AUGUSTUS	start_codon	5945971	5945973	.	+	0	transcript_id "Ledus.S1G052800.t1"; gene_id "Ledus.S1G052800"
Ledus.S1	AUGUSTUS	CDS	5945971	5946207	0.79	+	0	transcript_id "Ledus.S1G052800.t1"; gene_id "Ledus.S1G052800"
Ledus.S1	AUGUSTUS	exon	5945971	5946207	.	+	.	transcript_id "Ledus.S1G052800.t1"; gene_id "Ledus.S1G052800"
Ledus.S1	AUGUSTUS	stop_codon	5946208	5946210	.	+	0	transcript_id "Ledus.S1G052800.t1"; gene_id "Ledus.S1G052800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13047.t1 is derived from g6857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4115109	4117656	.	-	.	Ledus.S6G010900
Ledus.S6	AUGUSTUS	transcript	4115109	4117656	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	stop_codon	4115106	4115108	.	-	0	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	CDS	4115109	4115253	0.75	-	1	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	exon	4115109	4115253	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	intron	4115254	4115412	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	CDS	4115413	4115504	1	-	0	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	exon	4115413	4115504	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	intron	4115505	4115691	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	CDS	4115692	4115799	1	-	0	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	exon	4115692	4115799	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	intron	4115800	4116016	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	CDS	4116017	4116127	0.78	-	0	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	exon	4116017	4116127	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	intron	4116128	4116397	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	CDS	4116398	4116521	0.66	-	1	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	exon	4116398	4116521	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	intron	4116522	4116751	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	CDS	4116752	4116888	0.9	-	0	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	exon	4116752	4116888	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	intron	4116889	4117058	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	CDS	4117059	4117277	0.98	-	0	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	exon	4117059	4117277	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	intron	4117278	4117545	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	CDS	4117546	4117656	0.39	-	0	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	exon	4117546	4117656	.	-	.	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
Ledus.S6	AUGUSTUS	start_codon	4117654	4117656	.	-	0	transcript_id "Ledus.S6G010900.t1"; gene_id "Ledus.S6G010900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12607.t1 is derived from g6229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13211341	13212717	.	-	.	Ledus.S4G176300
Ledus.S4	AUGUSTUS	transcript	13211341	13212717	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	stop_codon	13211338	13211340	.	-	0	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	CDS	13211341	13211424	1	-	0	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	exon	13211341	13211424	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	intron	13211425	13211504	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	CDS	13211505	13211555	1	-	0	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	exon	13211505	13211555	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	intron	13211556	13211643	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	CDS	13211644	13211796	1	-	0	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	exon	13211644	13211796	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	intron	13211797	13211900	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	CDS	13211901	13212012	1	-	1	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	exon	13211901	13212012	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	intron	13212013	13212103	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	CDS	13212104	13212222	1	-	0	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	exon	13212104	13212222	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	intron	13212223	13212309	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	CDS	13212310	13212569	1	-	2	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	exon	13212310	13212569	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	intron	13212570	13212653	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	CDS	13212654	13212717	1	-	0	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	exon	13212654	13212717	.	-	.	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
Ledus.S4	AUGUSTUS	start_codon	13212715	13212717	.	-	0	transcript_id "Ledus.S4G176300.t1"; gene_id "Ledus.S4G176300"
# This transcript jg127.t2 is derived from g6988.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg128.t1 is derived from g6989.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	128854	129705	.	-	.	Ledus.S2G001000
Ledus.S2	AUGUSTUS	transcript	128854	129705	.	-	.	transcript_id "Ledus.S2G001000.t1"; gene_id "Ledus.S2G001000"
Ledus.S2	AUGUSTUS	stop_codon	128851	128853	.	-	0	transcript_id "Ledus.S2G001000.t1"; gene_id "Ledus.S2G001000"
Ledus.S2	AUGUSTUS	CDS	128854	129705	0.88	-	0	transcript_id "Ledus.S2G001000.t1"; gene_id "Ledus.S2G001000"
Ledus.S2	AUGUSTUS	exon	128854	129705	.	-	.	transcript_id "Ledus.S2G001000.t1"; gene_id "Ledus.S2G001000"
Ledus.S2	AUGUSTUS	start_codon	129703	129705	.	-	0	transcript_id "Ledus.S2G001000.t1"; gene_id "Ledus.S2G001000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7267.t1 is derived from g11938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	559401	559598	.	-	.	Ledus.S5G004500
Ledus.S5	AUGUSTUS	transcript	559401	559598	.	-	.	transcript_id "Ledus.S5G004500.t1"; gene_id "Ledus.S5G004500"
Ledus.S5	AUGUSTUS	stop_codon	559398	559400	.	-	0	transcript_id "Ledus.S5G004500.t1"; gene_id "Ledus.S5G004500"
Ledus.S5	AUGUSTUS	CDS	559401	559598	1	-	0	transcript_id "Ledus.S5G004500.t1"; gene_id "Ledus.S5G004500"
Ledus.S5	AUGUSTUS	exon	559401	559598	.	-	.	transcript_id "Ledus.S5G004500.t1"; gene_id "Ledus.S5G004500"
Ledus.S5	AUGUSTUS	start_codon	559596	559598	.	-	0	transcript_id "Ledus.S5G004500.t1"; gene_id "Ledus.S5G004500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5108.t1 is derived from g2547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21758355	21758788	.	-	.	Ledus.S1G252900
Ledus.S1	AUGUSTUS	transcript	21758355	21758788	.	-	.	transcript_id "Ledus.S1G252900.t1"; gene_id "Ledus.S1G252900"
Ledus.S1	AUGUSTUS	stop_codon	21758352	21758354	.	-	0	transcript_id "Ledus.S1G252900.t1"; gene_id "Ledus.S1G252900"
Ledus.S1	AUGUSTUS	CDS	21758355	21758411	0.93	-	0	transcript_id "Ledus.S1G252900.t1"; gene_id "Ledus.S1G252900"
Ledus.S1	AUGUSTUS	exon	21758355	21758411	.	-	.	transcript_id "Ledus.S1G252900.t1"; gene_id "Ledus.S1G252900"
Ledus.S1	AUGUSTUS	intron	21758412	21758515	.	-	.	transcript_id "Ledus.S1G252900.t1"; gene_id "Ledus.S1G252900"
Ledus.S1	AUGUSTUS	CDS	21758516	21758788	0.77	-	0	transcript_id "Ledus.S1G252900.t1"; gene_id "Ledus.S1G252900"
Ledus.S1	AUGUSTUS	exon	21758516	21758788	.	-	.	transcript_id "Ledus.S1G252900.t1"; gene_id "Ledus.S1G252900"
Ledus.S1	AUGUSTUS	start_codon	21758786	21758788	.	-	0	transcript_id "Ledus.S1G252900.t1"; gene_id "Ledus.S1G252900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3197.t1 is derived from g632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6722330	6722530	.	-	.	Ledus.S1G061800
Ledus.S1	AUGUSTUS	transcript	6722330	6722530	.	-	.	transcript_id "Ledus.S1G061800.t1"; gene_id "Ledus.S1G061800"
Ledus.S1	AUGUSTUS	stop_codon	6722327	6722329	.	-	0	transcript_id "Ledus.S1G061800.t1"; gene_id "Ledus.S1G061800"
Ledus.S1	AUGUSTUS	CDS	6722330	6722530	0.5	-	0	transcript_id "Ledus.S1G061800.t1"; gene_id "Ledus.S1G061800"
Ledus.S1	AUGUSTUS	exon	6722330	6722530	.	-	.	transcript_id "Ledus.S1G061800.t1"; gene_id "Ledus.S1G061800"
Ledus.S1	AUGUSTUS	start_codon	6722528	6722530	.	-	0	transcript_id "Ledus.S1G061800.t1"; gene_id "Ledus.S1G061800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2322.t1 is derived from g9185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17159722	17163483	.	+	.	Ledus.S2G220400
Ledus.S2	AUGUSTUS	transcript	17159722	17163483	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	start_codon	17159722	17159724	.	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17159722	17159734	1	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17159722	17159734	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17159735	17159856	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17159857	17159948	0.99	+	2	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17159857	17159948	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17159949	17160149	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17160150	17160323	1	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17160150	17160323	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17160324	17160407	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17160408	17160481	1	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17160408	17160481	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17160482	17160691	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17160692	17160772	1	+	1	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17160692	17160772	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17160773	17160861	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17160862	17160922	1	+	1	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17160862	17160922	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17160923	17161045	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17161046	17161095	1	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17161046	17161095	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17161096	17161271	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17161272	17161326	1	+	1	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17161272	17161326	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17161327	17161412	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17161413	17161490	1	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17161413	17161490	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17161491	17161567	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17161568	17161621	1	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17161568	17161621	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17161622	17161727	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17161728	17161781	1	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17161728	17161781	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17161782	17161991	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17161992	17162052	1	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17161992	17162052	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17162053	17162174	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17162175	17162226	1	+	2	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17162175	17162226	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17162227	17162333	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17162334	17162400	1	+	1	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17162334	17162400	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17162401	17162550	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17162551	17162616	1	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17162551	17162616	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17162617	17162732	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17162733	17162795	1	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17162733	17162795	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17162796	17162916	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17162917	17162979	1	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17162917	17162979	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17162980	17163130	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17163131	17163195	1	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17163131	17163195	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17163196	17163275	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17163276	17163344	1	+	1	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17163276	17163344	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	intron	17163345	17163440	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	CDS	17163441	17163483	1	+	1	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	exon	17163441	17163483	.	+	.	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
Ledus.S2	AUGUSTUS	stop_codon	17163484	17163486	.	+	0	transcript_id "Ledus.S2G220400.t1"; gene_id "Ledus.S2G220400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg1808.t1 is derived from g8671.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12703200	12710847	.	+	.	Ledus.S2G169000
Ledus.S2	AUGUSTUS	transcript	12703200	12710847	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	start_codon	12703200	12703202	.	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12703200	12703481	0.26	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12703200	12703481	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12703482	12703596	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12703597	12703766	0.38	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12703597	12703766	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12703767	12703937	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12703938	12703974	0.64	+	1	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12703938	12703974	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12703975	12704164	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12704165	12704260	0.63	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12704165	12704260	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12704261	12704818	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12704819	12705073	1	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12704819	12705073	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705074	12705237	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12705238	12705362	0.98	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12705238	12705362	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705363	12705463	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12705464	12705508	1	+	1	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12705464	12705508	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705509	12705786	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12705787	12705868	1	+	1	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12705787	12705868	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705869	12706100	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706101	12706169	1	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706101	12706169	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706170	12706355	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706356	12706526	0.86	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706356	12706526	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706527	12706633	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706634	12706699	1	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706634	12706699	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706700	12706874	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706875	12706943	1	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706875	12706943	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706944	12707033	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12707034	12707237	1	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12707034	12707237	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12707238	12707354	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12707355	12707413	1	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12707355	12707413	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12707414	12707798	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12707799	12707840	1	+	1	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12707799	12707840	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12707841	12708062	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708063	12708338	1	+	1	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708063	12708338	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12708339	12708505	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708506	12708660	1	+	1	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708506	12708660	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12708661	12708743	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708744	12708835	1	+	2	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708744	12708835	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12708836	12708975	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708976	12709017	1	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708976	12709017	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12709018	12709193	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12709194	12709253	1	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12709194	12709253	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12709254	12709764	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12709765	12709893	0.97	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12709765	12709893	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12709894	12709992	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12709993	12710044	1	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12709993	12710044	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710045	12710176	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710177	12710247	1	+	2	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710177	12710247	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710248	12710370	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710371	12710432	1	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710371	12710432	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710433	12710607	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710608	12710671	0.99	+	1	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710608	12710671	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710672	12710766	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710767	12710847	0.97	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710767	12710847	.	+	.	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	stop_codon	12710848	12710850	.	+	0	transcript_id "Ledus.S2G169000.t1"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	transcript	12703200	12710847	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	start_codon	12703200	12703202	.	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12703200	12703481	0.34	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12703200	12703481	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12703482	12703596	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12703597	12703766	0.42	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12703597	12703766	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12703767	12703937	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12703938	12703974	0.63	+	1	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12703938	12703974	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12703975	12704164	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12704165	12704260	0.62	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12704165	12704260	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12704261	12704818	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12704819	12705073	1	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12704819	12705073	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705074	12705237	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12705238	12705362	0.97	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12705238	12705362	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705363	12705463	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12705464	12705508	1	+	1	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12705464	12705508	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705509	12705786	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12705787	12705868	1	+	1	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12705787	12705868	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705869	12706100	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706101	12706169	1	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706101	12706169	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706170	12706355	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706356	12706526	0.85	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706356	12706526	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706527	12706633	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706634	12706699	1	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706634	12706699	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706700	12706874	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706875	12706943	1	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706875	12706943	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706944	12707033	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12707034	12707237	0.99	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12707034	12707237	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12707238	12707354	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12707355	12707413	1	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12707355	12707413	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12707414	12707798	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12707799	12707840	1	+	1	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12707799	12707840	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12707841	12708062	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708063	12708338	1	+	1	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708063	12708338	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12708339	12708505	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708506	12708660	1	+	1	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708506	12708660	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12708661	12708743	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708744	12708835	1	+	2	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708744	12708835	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12708836	12708975	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708976	12709017	1	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708976	12709017	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12709018	12709193	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12709194	12709253	0.98	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12709194	12709253	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12709254	12709764	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12709765	12709893	0.95	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12709765	12709893	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12709894	12709992	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12709993	12710044	1	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12709993	12710044	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710045	12710176	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710177	12710247	1	+	2	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710177	12710247	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710248	12710370	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710371	12710432	1	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710371	12710432	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710433	12710511	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710512	12710563	1	+	1	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710512	12710563	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710564	12710766	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710767	12710847	0.96	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710767	12710847	.	+	.	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	stop_codon	12710848	12710850	.	+	0	transcript_id "Ledus.S2G169000.t2"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	transcript	12703200	12710847	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	start_codon	12703200	12703202	.	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12703200	12703481	0.33	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12703200	12703481	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12703482	12703596	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12703597	12703766	0.43	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12703597	12703766	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12703767	12703937	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12703938	12703974	0.55	+	1	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12703938	12703974	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12703975	12704164	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12704165	12704260	0.55	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12704165	12704260	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12704261	12704818	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12704819	12705073	1	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12704819	12705073	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705074	12705237	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12705238	12705362	0.97	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12705238	12705362	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705363	12705463	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12705464	12705508	1	+	1	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12705464	12705508	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705509	12705786	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12705787	12705868	1	+	1	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12705787	12705868	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705869	12706100	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706101	12706169	1	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706101	12706169	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706170	12706355	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706356	12706526	0.83	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706356	12706526	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706527	12706633	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706634	12706699	1	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706634	12706699	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706700	12706874	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706875	12706943	1	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706875	12706943	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706944	12707033	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12707034	12707237	1	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12707034	12707237	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12707238	12707354	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12707355	12707413	1	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12707355	12707413	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12707414	12707798	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12707799	12707840	1	+	1	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12707799	12707840	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12707841	12708062	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708063	12708338	1	+	1	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708063	12708338	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12708339	12708505	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708506	12708660	1	+	1	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708506	12708660	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12708661	12708743	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708744	12708835	1	+	2	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708744	12708835	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12708836	12708975	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708976	12709017	1	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708976	12709017	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12709018	12709193	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12709194	12709253	0.9	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12709194	12709253	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12709254	12709767	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12709768	12709893	0.83	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12709768	12709893	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12709894	12709992	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12709993	12710044	1	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12709993	12710044	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710045	12710176	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710177	12710247	1	+	2	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710177	12710247	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710248	12710370	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710371	12710432	1	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710371	12710432	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710433	12710607	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710608	12710671	1	+	1	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710608	12710671	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710672	12710766	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710767	12710847	0.97	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710767	12710847	.	+	.	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	stop_codon	12710848	12710850	.	+	0	transcript_id "Ledus.S2G169000.t3"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	transcript	12703200	12710847	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	start_codon	12703200	12703202	.	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12703200	12703481	0.36	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12703200	12703481	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12703482	12703596	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12703597	12703766	0.44	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12703597	12703766	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12703767	12703937	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12703938	12703974	0.57	+	1	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12703938	12703974	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12703975	12704164	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12704165	12704260	0.55	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12704165	12704260	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12704261	12704818	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12704819	12705073	1	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12704819	12705073	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705074	12705237	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12705238	12705362	0.97	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12705238	12705362	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705363	12705463	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12705464	12705508	1	+	1	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12705464	12705508	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705509	12705786	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12705787	12705868	1	+	1	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12705787	12705868	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12705869	12706100	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706101	12706169	1	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706101	12706169	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706170	12706355	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706356	12706526	0.78	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706356	12706526	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706527	12706633	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706634	12706699	1	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706634	12706699	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706700	12706874	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12706875	12706943	1	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12706875	12706943	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12706944	12707033	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12707034	12707237	1	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12707034	12707237	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12707238	12707354	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12707355	12707413	1	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12707355	12707413	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12707414	12707798	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12707799	12707840	1	+	1	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12707799	12707840	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12707841	12708062	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708063	12708338	1	+	1	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708063	12708338	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12708339	12708505	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708506	12708660	1	+	1	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708506	12708660	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12708661	12708743	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708744	12708835	1	+	2	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708744	12708835	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12708836	12708975	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12708976	12709017	1	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12708976	12709017	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12709018	12709193	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12709194	12709253	0.99	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12709194	12709253	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12709254	12709764	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12709765	12709893	0.96	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12709765	12709893	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12709894	12709992	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12709993	12710044	1	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12709993	12710044	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710045	12710176	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710177	12710247	1	+	2	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710177	12710247	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710248	12710370	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710371	12710432	1	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710371	12710432	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710433	12710607	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710608	12710659	0.6	+	1	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710608	12710659	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	intron	12710660	12710766	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	CDS	12710767	12710847	0.92	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	exon	12710767	12710847	.	+	.	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
Ledus.S2	AUGUSTUS	stop_codon	12710848	12710850	.	+	0	transcript_id "Ledus.S2G169000.t4"; gene_id "Ledus.S2G169000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2318.t1 is derived from g9181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17148597	17149938	.	-	.	Ledus.S2G220000
Ledus.S2	AUGUSTUS	transcript	17148597	17149938	.	-	.	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	stop_codon	17148594	17148596	.	-	0	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	CDS	17148597	17148926	1	-	0	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	exon	17148597	17148926	.	-	.	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	intron	17148927	17149024	.	-	.	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	CDS	17149025	17149187	1	-	1	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	exon	17149025	17149187	.	-	.	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	intron	17149188	17149363	.	-	.	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	CDS	17149364	17149447	1	-	1	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	exon	17149364	17149447	.	-	.	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	intron	17149448	17149587	.	-	.	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	CDS	17149588	17149656	1	-	1	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	exon	17149588	17149656	.	-	.	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	intron	17149657	17149750	.	-	.	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	CDS	17149751	17149938	0.61	-	0	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	exon	17149751	17149938	.	-	.	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
Ledus.S2	AUGUSTUS	start_codon	17149936	17149938	.	-	0	transcript_id "Ledus.S2G220000.t1"; gene_id "Ledus.S2G220000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7895.t1 is derived from g12566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7714843	7717180	.	-	.	Ledus.S5G067300
Ledus.S5	AUGUSTUS	transcript	7714843	7717180	.	-	.	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	stop_codon	7714840	7714842	.	-	0	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	CDS	7714843	7714959	1	-	0	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	exon	7714843	7714959	.	-	.	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	intron	7714960	7715057	.	-	.	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	CDS	7715058	7715213	1	-	0	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	exon	7715058	7715213	.	-	.	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	intron	7715214	7715289	.	-	.	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	CDS	7715290	7715562	1	-	0	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	exon	7715290	7715562	.	-	.	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	intron	7715563	7715719	.	-	.	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	CDS	7715720	7717180	0.92	-	0	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	exon	7715720	7717180	.	-	.	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
Ledus.S5	AUGUSTUS	start_codon	7717178	7717180	.	-	0	transcript_id "Ledus.S5G067300.t1"; gene_id "Ledus.S5G067300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10448.t1 is derived from g11478.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15206609	15208479	.	-	.	Ledus.S3G192500
Ledus.S3	AUGUSTUS	transcript	15206609	15208479	.	-	.	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	stop_codon	15206606	15206608	.	-	0	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	CDS	15206609	15206645	0.99	-	1	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	exon	15206609	15206645	.	-	.	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	intron	15206646	15206782	.	-	.	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	CDS	15206783	15206871	1	-	0	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	exon	15206783	15206871	.	-	.	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	intron	15206872	15207051	.	-	.	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	CDS	15207052	15207121	1	-	1	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	exon	15207052	15207121	.	-	.	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	intron	15207122	15207238	.	-	.	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	CDS	15207239	15208014	0.88	-	0	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	exon	15207239	15208014	.	-	.	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	intron	15208015	15208125	.	-	.	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	CDS	15208126	15208213	0.93	-	1	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	exon	15208126	15208213	.	-	.	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	intron	15208214	15208465	.	-	.	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	CDS	15208466	15208479	0.99	-	0	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	exon	15208466	15208479	.	-	.	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
Ledus.S3	AUGUSTUS	start_codon	15208477	15208479	.	-	0	transcript_id "Ledus.S3G192500.t1"; gene_id "Ledus.S3G192500"
# This transcript jg3673.t2 is derived from g1109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3674.t1 is derived from g1110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10607932	10609512	.	+	.	Ledus.S1G109500
Ledus.S1	AUGUSTUS	transcript	10607932	10609512	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	start_codon	10607932	10607934	.	+	0	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10607932	10607991	1	+	0	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10607932	10607991	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10607992	10608192	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10608193	10608355	1	+	0	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10608193	10608355	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10608356	10608546	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10608547	10608640	1	+	2	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10608547	10608640	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10608641	10608829	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10608830	10608954	1	+	1	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10608830	10608954	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10608955	10609081	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10609082	10609130	1	+	2	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10609082	10609130	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10609131	10609228	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10609229	10609320	1	+	1	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10609229	10609320	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10609321	10609453	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10609454	10609512	1	+	2	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10609454	10609512	.	+	.	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	stop_codon	10609513	10609515	.	+	0	transcript_id "Ledus.S1G109500.t1"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	transcript	10607932	10609512	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	start_codon	10607932	10607934	.	+	0	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10607932	10607991	0.94	+	0	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10607932	10607991	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10607992	10608141	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10608142	10608158	0.95	+	0	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10608142	10608158	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10608159	10608239	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10608240	10608355	0.95	+	1	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10608240	10608355	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10608356	10608546	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10608547	10608640	1	+	2	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10608547	10608640	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10608641	10608829	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10608830	10608954	1	+	1	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10608830	10608954	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10608955	10609081	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10609082	10609130	1	+	2	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10609082	10609130	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10609131	10609228	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10609229	10609320	1	+	1	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10609229	10609320	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	intron	10609321	10609453	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	CDS	10609454	10609512	1	+	2	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	exon	10609454	10609512	.	+	.	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
Ledus.S1	AUGUSTUS	stop_codon	10609513	10609515	.	+	0	transcript_id "Ledus.S1G109500.t2"; gene_id "Ledus.S1G109500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7239.t1 is derived from g11910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	216880	219076	.	+	.	Ledus.S5G001700
Ledus.S5	AUGUSTUS	transcript	216880	219076	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	start_codon	216880	216882	.	+	0	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	216880	217110	0.98	+	0	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	216880	217110	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	intron	217111	217189	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	217190	217232	1	+	0	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	217190	217232	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	intron	217233	217324	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	217325	217400	1	+	2	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	217325	217400	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	intron	217401	217475	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	217476	217535	1	+	1	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	217476	217535	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	intron	217536	217636	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	217637	217687	0.98	+	1	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	217637	217687	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	intron	217688	217785	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	217786	217840	0.99	+	1	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	217786	217840	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	intron	217841	217945	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	217946	218016	1	+	0	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	217946	218016	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	intron	218017	218110	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	218111	218162	1	+	1	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	218111	218162	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	intron	218163	218267	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	218268	218345	0.95	+	0	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	218268	218345	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	intron	218346	218487	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	218488	218577	1	+	0	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	218488	218577	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	intron	218578	218663	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	218664	218777	1	+	0	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	218664	218777	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	intron	218778	218865	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	218866	218934	1	+	0	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	218866	218934	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	intron	218935	219022	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	CDS	219023	219076	1	+	0	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	exon	219023	219076	.	+	.	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
Ledus.S5	AUGUSTUS	stop_codon	219077	219079	.	+	0	transcript_id "Ledus.S5G001700.t1"; gene_id "Ledus.S5G001700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2708.t1 is derived from g141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2316219	2317139	.	-	.	Ledus.S1G012900
Ledus.S1	AUGUSTUS	transcript	2316219	2317139	.	-	.	transcript_id "Ledus.S1G012900.t1"; gene_id "Ledus.S1G012900"
Ledus.S1	AUGUSTUS	stop_codon	2316216	2316218	.	-	0	transcript_id "Ledus.S1G012900.t1"; gene_id "Ledus.S1G012900"
Ledus.S1	AUGUSTUS	CDS	2316219	2316463	0.23	-	2	transcript_id "Ledus.S1G012900.t1"; gene_id "Ledus.S1G012900"
Ledus.S1	AUGUSTUS	exon	2316219	2316463	.	-	.	transcript_id "Ledus.S1G012900.t1"; gene_id "Ledus.S1G012900"
Ledus.S1	AUGUSTUS	intron	2316464	2316935	.	-	.	transcript_id "Ledus.S1G012900.t1"; gene_id "Ledus.S1G012900"
Ledus.S1	AUGUSTUS	CDS	2316936	2317058	0.4	-	2	transcript_id "Ledus.S1G012900.t1"; gene_id "Ledus.S1G012900"
Ledus.S1	AUGUSTUS	exon	2316936	2317058	.	-	.	transcript_id "Ledus.S1G012900.t1"; gene_id "Ledus.S1G012900"
Ledus.S1	AUGUSTUS	intron	2317059	2317129	.	-	.	transcript_id "Ledus.S1G012900.t1"; gene_id "Ledus.S1G012900"
Ledus.S1	AUGUSTUS	CDS	2317130	2317139	0.45	-	0	transcript_id "Ledus.S1G012900.t1"; gene_id "Ledus.S1G012900"
Ledus.S1	AUGUSTUS	exon	2317130	2317139	.	-	.	transcript_id "Ledus.S1G012900.t1"; gene_id "Ledus.S1G012900"
Ledus.S1	AUGUSTUS	start_codon	2317137	2317139	.	-	0	transcript_id "Ledus.S1G012900.t1"; gene_id "Ledus.S1G012900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8811.t1 is derived from g9841.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2097932	2098330	.	+	.	Ledus.S3G028800
Ledus.S3	AUGUSTUS	transcript	2097932	2098330	.	+	.	transcript_id "Ledus.S3G028800.t1"; gene_id "Ledus.S3G028800"
Ledus.S3	AUGUSTUS	start_codon	2097932	2097934	.	+	0	transcript_id "Ledus.S3G028800.t1"; gene_id "Ledus.S3G028800"
Ledus.S3	AUGUSTUS	CDS	2097932	2098330	0.63	+	0	transcript_id "Ledus.S3G028800.t1"; gene_id "Ledus.S3G028800"
Ledus.S3	AUGUSTUS	exon	2097932	2098330	.	+	.	transcript_id "Ledus.S3G028800.t1"; gene_id "Ledus.S3G028800"
Ledus.S3	AUGUSTUS	stop_codon	2098331	2098333	.	+	0	transcript_id "Ledus.S3G028800.t1"; gene_id "Ledus.S3G028800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1217.t1 is derived from g8078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8657188	8660182	.	-	.	Ledus.S2G109900
Ledus.S2	AUGUSTUS	transcript	8657188	8660182	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	stop_codon	8657185	8657187	.	-	0	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	CDS	8657188	8657490	0.99	-	0	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	exon	8657188	8657490	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	intron	8657491	8657594	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	CDS	8657595	8657672	0.96	-	0	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	exon	8657595	8657672	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	intron	8657673	8657793	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	CDS	8657794	8657862	0.94	-	0	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	exon	8657794	8657862	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	intron	8657863	8657987	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	CDS	8657988	8658039	1	-	1	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	exon	8657988	8658039	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	intron	8658040	8658242	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	CDS	8658243	8658397	1	-	0	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	exon	8658243	8658397	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	intron	8658398	8658546	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	CDS	8658547	8658661	1	-	1	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	exon	8658547	8658661	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	intron	8658662	8658783	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	CDS	8658784	8658944	1	-	0	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	exon	8658784	8658944	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	intron	8658945	8659046	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	CDS	8659047	8659154	1	-	0	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	exon	8659047	8659154	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	intron	8659155	8659390	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	CDS	8659391	8659465	1	-	0	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	exon	8659391	8659465	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	intron	8659466	8659804	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	CDS	8659805	8660182	1	-	0	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	exon	8659805	8660182	.	-	.	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
Ledus.S2	AUGUSTUS	start_codon	8660180	8660182	.	-	0	transcript_id "Ledus.S2G109900.t1"; gene_id "Ledus.S2G109900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1622.t1 is derived from g8483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11462645	11463083	.	+	.	Ledus.S2G150400
Ledus.S2	AUGUSTUS	transcript	11462645	11463083	.	+	.	transcript_id "Ledus.S2G150400.t1"; gene_id "Ledus.S2G150400"
Ledus.S2	AUGUSTUS	start_codon	11462645	11462647	.	+	0	transcript_id "Ledus.S2G150400.t1"; gene_id "Ledus.S2G150400"
Ledus.S2	AUGUSTUS	CDS	11462645	11462817	0.55	+	0	transcript_id "Ledus.S2G150400.t1"; gene_id "Ledus.S2G150400"
Ledus.S2	AUGUSTUS	exon	11462645	11462817	.	+	.	transcript_id "Ledus.S2G150400.t1"; gene_id "Ledus.S2G150400"
Ledus.S2	AUGUSTUS	intron	11462818	11463040	.	+	.	transcript_id "Ledus.S2G150400.t1"; gene_id "Ledus.S2G150400"
Ledus.S2	AUGUSTUS	CDS	11463041	11463083	0.85	+	1	transcript_id "Ledus.S2G150400.t1"; gene_id "Ledus.S2G150400"
Ledus.S2	AUGUSTUS	exon	11463041	11463083	.	+	.	transcript_id "Ledus.S2G150400.t1"; gene_id "Ledus.S2G150400"
Ledus.S2	AUGUSTUS	stop_codon	11463084	11463086	.	+	0	transcript_id "Ledus.S2G150400.t1"; gene_id "Ledus.S2G150400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1797.t1 is derived from g8660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12643398	12644202	.	-	.	Ledus.S2G167900
Ledus.S2	AUGUSTUS	transcript	12643398	12644202	.	-	.	transcript_id "Ledus.S2G167900.t1"; gene_id "Ledus.S2G167900"
Ledus.S2	AUGUSTUS	stop_codon	12643395	12643397	.	-	0	transcript_id "Ledus.S2G167900.t1"; gene_id "Ledus.S2G167900"
Ledus.S2	AUGUSTUS	CDS	12643398	12643670	0.35	-	0	transcript_id "Ledus.S2G167900.t1"; gene_id "Ledus.S2G167900"
Ledus.S2	AUGUSTUS	exon	12643398	12643670	.	-	.	transcript_id "Ledus.S2G167900.t1"; gene_id "Ledus.S2G167900"
Ledus.S2	AUGUSTUS	intron	12643671	12643791	.	-	.	transcript_id "Ledus.S2G167900.t1"; gene_id "Ledus.S2G167900"
Ledus.S2	AUGUSTUS	CDS	12643792	12644006	0.8	-	2	transcript_id "Ledus.S2G167900.t1"; gene_id "Ledus.S2G167900"
Ledus.S2	AUGUSTUS	exon	12643792	12644006	.	-	.	transcript_id "Ledus.S2G167900.t1"; gene_id "Ledus.S2G167900"
Ledus.S2	AUGUSTUS	intron	12644007	12644084	.	-	.	transcript_id "Ledus.S2G167900.t1"; gene_id "Ledus.S2G167900"
Ledus.S2	AUGUSTUS	CDS	12644085	12644202	0.61	-	0	transcript_id "Ledus.S2G167900.t1"; gene_id "Ledus.S2G167900"
Ledus.S2	AUGUSTUS	exon	12644085	12644202	.	-	.	transcript_id "Ledus.S2G167900.t1"; gene_id "Ledus.S2G167900"
Ledus.S2	AUGUSTUS	start_codon	12644200	12644202	.	-	0	transcript_id "Ledus.S2G167900.t1"; gene_id "Ledus.S2G167900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7923.t1 is derived from g12594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7853558	7856127	.	+	.	Ledus.S5G070100
Ledus.S5	AUGUSTUS	transcript	7853558	7856127	.	+	.	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	start_codon	7853558	7853560	.	+	0	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	CDS	7853558	7853712	0.46	+	0	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	exon	7853558	7853712	.	+	.	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	intron	7853713	7853837	.	+	.	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	CDS	7853838	7854037	0.15	+	1	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	exon	7853838	7854037	.	+	.	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	intron	7854038	7855112	.	+	.	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	CDS	7855113	7855128	0.99	+	2	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	exon	7855113	7855128	.	+	.	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	intron	7855129	7855211	.	+	.	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	CDS	7855212	7855555	0.99	+	1	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	exon	7855212	7855555	.	+	.	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	intron	7855556	7855789	.	+	.	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	CDS	7855790	7856127	1	+	2	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	exon	7855790	7856127	.	+	.	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
Ledus.S5	AUGUSTUS	stop_codon	7856128	7856130	.	+	0	transcript_id "Ledus.S5G070100.t1"; gene_id "Ledus.S5G070100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5918.t1 is derived from g3361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27809382	27809903	.	+	.	Ledus.S1G333900
Ledus.S1	AUGUSTUS	transcript	27809382	27809903	.	+	.	transcript_id "Ledus.S1G333900.t1"; gene_id "Ledus.S1G333900"
Ledus.S1	AUGUSTUS	start_codon	27809382	27809384	.	+	0	transcript_id "Ledus.S1G333900.t1"; gene_id "Ledus.S1G333900"
Ledus.S1	AUGUSTUS	CDS	27809382	27809903	0.85	+	0	transcript_id "Ledus.S1G333900.t1"; gene_id "Ledus.S1G333900"
Ledus.S1	AUGUSTUS	exon	27809382	27809903	.	+	.	transcript_id "Ledus.S1G333900.t1"; gene_id "Ledus.S1G333900"
Ledus.S1	AUGUSTUS	stop_codon	27809904	27809906	.	+	0	transcript_id "Ledus.S1G333900.t1"; gene_id "Ledus.S1G333900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12024.t1 is derived from g5643.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8877479	8877778	.	-	.	Ledus.S4G118000
Ledus.S4	AUGUSTUS	transcript	8877479	8877778	.	-	.	transcript_id "Ledus.S4G118000.t1"; gene_id "Ledus.S4G118000"
Ledus.S4	AUGUSTUS	stop_codon	8877476	8877478	.	-	0	transcript_id "Ledus.S4G118000.t1"; gene_id "Ledus.S4G118000"
Ledus.S4	AUGUSTUS	CDS	8877479	8877778	1	-	0	transcript_id "Ledus.S4G118000.t1"; gene_id "Ledus.S4G118000"
Ledus.S4	AUGUSTUS	exon	8877479	8877778	.	-	.	transcript_id "Ledus.S4G118000.t1"; gene_id "Ledus.S4G118000"
Ledus.S4	AUGUSTUS	start_codon	8877776	8877778	.	-	0	transcript_id "Ledus.S4G118000.t1"; gene_id "Ledus.S4G118000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12450.t1 is derived from g6071.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12067710	12075933	.	-	.	Ledus.S4G160600
Ledus.S4	AUGUSTUS	transcript	12067710	12075933	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	stop_codon	12067707	12067709	.	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12067710	12068147	0.72	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12067710	12068147	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12068148	12068237	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12068238	12069191	1	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12068238	12069191	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12069192	12069320	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12069321	12069473	0.97	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12069321	12069473	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12069474	12069562	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12069563	12069661	1	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12069563	12069661	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12069662	12069738	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12069739	12073206	1	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12069739	12073206	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12073207	12073295	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12073296	12073416	0.89	-	1	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12073296	12073416	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12073417	12073510	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12073511	12073660	1	-	1	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12073511	12073660	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12073661	12073740	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12073741	12073886	0.97	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12073741	12073886	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12073887	12073980	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12073981	12074076	0.88	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12073981	12074076	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12074077	12074232	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12074233	12074325	1	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12074233	12074325	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12074326	12074408	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12074409	12074462	0.99	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12074409	12074462	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12074463	12074578	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12074579	12074638	1	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12074579	12074638	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12074639	12074734	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12074735	12074860	1	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12074735	12074860	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12074861	12074962	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12074963	12075046	1	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12074963	12075046	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12075047	12075120	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12075121	12075261	1	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12075121	12075261	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	intron	12075262	12075438	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	CDS	12075439	12075933	0.97	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	exon	12075439	12075933	.	-	.	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
Ledus.S4	AUGUSTUS	start_codon	12075931	12075933	.	-	0	transcript_id "Ledus.S4G160600.t1"; gene_id "Ledus.S4G160600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2047.t1 is derived from g8910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14328770	14329548	.	+	.	Ledus.S2G192900
Ledus.S2	AUGUSTUS	transcript	14328770	14329548	.	+	.	transcript_id "Ledus.S2G192900.t1"; gene_id "Ledus.S2G192900"
Ledus.S2	AUGUSTUS	start_codon	14328770	14328772	.	+	0	transcript_id "Ledus.S2G192900.t1"; gene_id "Ledus.S2G192900"
Ledus.S2	AUGUSTUS	CDS	14328770	14328883	1	+	0	transcript_id "Ledus.S2G192900.t1"; gene_id "Ledus.S2G192900"
Ledus.S2	AUGUSTUS	exon	14328770	14328883	.	+	.	transcript_id "Ledus.S2G192900.t1"; gene_id "Ledus.S2G192900"
Ledus.S2	AUGUSTUS	intron	14328884	14329196	.	+	.	transcript_id "Ledus.S2G192900.t1"; gene_id "Ledus.S2G192900"
Ledus.S2	AUGUSTUS	CDS	14329197	14329298	1	+	0	transcript_id "Ledus.S2G192900.t1"; gene_id "Ledus.S2G192900"
Ledus.S2	AUGUSTUS	exon	14329197	14329298	.	+	.	transcript_id "Ledus.S2G192900.t1"; gene_id "Ledus.S2G192900"
Ledus.S2	AUGUSTUS	intron	14329299	14329521	.	+	.	transcript_id "Ledus.S2G192900.t1"; gene_id "Ledus.S2G192900"
Ledus.S2	AUGUSTUS	CDS	14329522	14329548	1	+	0	transcript_id "Ledus.S2G192900.t1"; gene_id "Ledus.S2G192900"
Ledus.S2	AUGUSTUS	exon	14329522	14329548	.	+	.	transcript_id "Ledus.S2G192900.t1"; gene_id "Ledus.S2G192900"
Ledus.S2	AUGUSTUS	stop_codon	14329549	14329551	.	+	0	transcript_id "Ledus.S2G192900.t1"; gene_id "Ledus.S2G192900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12616.t1 is derived from g6238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13240230	13244244	.	+	.	Ledus.S4G177200
Ledus.S4	AUGUSTUS	transcript	13240230	13244244	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	start_codon	13240230	13240232	.	+	0	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	CDS	13240230	13240797	0.4	+	0	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	exon	13240230	13240797	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	intron	13240798	13240894	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	CDS	13240895	13241046	1	+	2	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	exon	13240895	13241046	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	intron	13241047	13241145	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	CDS	13241146	13241331	1	+	0	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	exon	13241146	13241331	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	intron	13241332	13241461	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	CDS	13241462	13241776	1	+	0	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	exon	13241462	13241776	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	intron	13241777	13241939	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	CDS	13241940	13241999	1	+	0	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	exon	13241940	13241999	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	intron	13242000	13242137	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	CDS	13242138	13242275	0.56	+	0	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	exon	13242138	13242275	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	intron	13242276	13242627	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	CDS	13242628	13242725	0.99	+	0	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	exon	13242628	13242725	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	intron	13242726	13242823	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	CDS	13242824	13242881	1	+	1	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	exon	13242824	13242881	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	intron	13242882	13243003	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	CDS	13243004	13243087	1	+	0	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	exon	13243004	13243087	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	intron	13243088	13243229	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	CDS	13243230	13243331	1	+	0	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	exon	13243230	13243331	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	intron	13243332	13243421	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	CDS	13243422	13243757	1	+	0	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	exon	13243422	13243757	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	intron	13243758	13243875	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	CDS	13243876	13244244	0.99	+	0	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	exon	13243876	13244244	.	+	.	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
Ledus.S4	AUGUSTUS	stop_codon	13244245	13244247	.	+	0	transcript_id "Ledus.S4G177200.t1"; gene_id "Ledus.S4G177200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6723.t1 is derived from g4166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33533995	33535751	.	+	.	Ledus.S1G414400
Ledus.S1	AUGUSTUS	transcript	33533995	33535751	.	+	.	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	start_codon	33533995	33533997	.	+	0	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	CDS	33533995	33534090	0.51	+	0	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	exon	33533995	33534090	.	+	.	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	intron	33534091	33534174	.	+	.	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	CDS	33534175	33534478	1	+	0	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	exon	33534175	33534478	.	+	.	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	intron	33534479	33534575	.	+	.	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	CDS	33534576	33534952	1	+	2	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	exon	33534576	33534952	.	+	.	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	intron	33534953	33535037	.	+	.	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	CDS	33535038	33535226	1	+	0	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	exon	33535038	33535226	.	+	.	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	intron	33535227	33535314	.	+	.	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	CDS	33535315	33535403	1	+	0	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	exon	33535315	33535403	.	+	.	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	intron	33535404	33535543	.	+	.	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	CDS	33535544	33535751	1	+	1	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	exon	33535544	33535751	.	+	.	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
Ledus.S1	AUGUSTUS	stop_codon	33535752	33535754	.	+	0	transcript_id "Ledus.S1G414400.t1"; gene_id "Ledus.S1G414400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11789.t1 is derived from g5408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6797918	6801396	.	-	.	Ledus.S4G094500
Ledus.S4	AUGUSTUS	transcript	6797918	6801396	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	stop_codon	6797915	6797917	.	-	0	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	CDS	6797918	6798310	1	-	0	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	exon	6797918	6798310	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	intron	6798311	6798412	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	CDS	6798413	6798661	1	-	0	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	exon	6798413	6798661	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	intron	6798662	6798727	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	CDS	6798728	6798922	1	-	0	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	exon	6798728	6798922	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	intron	6798923	6799005	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	CDS	6799006	6799300	1	-	1	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	exon	6799006	6799300	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	intron	6799301	6799385	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	CDS	6799386	6799757	1	-	1	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	exon	6799386	6799757	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	intron	6799758	6799965	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	CDS	6799966	6800034	0.98	-	1	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	exon	6799966	6800034	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	intron	6800035	6800128	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	CDS	6800129	6800292	0.8	-	0	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	exon	6800129	6800292	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	intron	6800293	6800397	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	CDS	6800398	6800447	0.96	-	2	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	exon	6800398	6800447	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	intron	6800448	6800599	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	CDS	6800600	6800641	1	-	2	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	exon	6800600	6800641	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	intron	6800642	6800984	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	CDS	6800985	6801396	0.91	-	0	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	exon	6800985	6801396	.	-	.	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
Ledus.S4	AUGUSTUS	start_codon	6801394	6801396	.	-	0	transcript_id "Ledus.S4G094500.t1"; gene_id "Ledus.S4G094500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg573.t1 is derived from g7434.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3412513	3414565	.	-	.	Ledus.S2G045500
Ledus.S2	AUGUSTUS	transcript	3412513	3414565	.	-	.	transcript_id "Ledus.S2G045500.t1"; gene_id "Ledus.S2G045500"
Ledus.S2	AUGUSTUS	stop_codon	3412510	3412512	.	-	0	transcript_id "Ledus.S2G045500.t1"; gene_id "Ledus.S2G045500"
Ledus.S2	AUGUSTUS	CDS	3412513	3413853	1	-	0	transcript_id "Ledus.S2G045500.t1"; gene_id "Ledus.S2G045500"
Ledus.S2	AUGUSTUS	exon	3412513	3413853	.	-	.	transcript_id "Ledus.S2G045500.t1"; gene_id "Ledus.S2G045500"
Ledus.S2	AUGUSTUS	intron	3413854	3413974	.	-	.	transcript_id "Ledus.S2G045500.t1"; gene_id "Ledus.S2G045500"
Ledus.S2	AUGUSTUS	CDS	3413975	3414565	1	-	0	transcript_id "Ledus.S2G045500.t1"; gene_id "Ledus.S2G045500"
Ledus.S2	AUGUSTUS	exon	3413975	3414565	.	-	.	transcript_id "Ledus.S2G045500.t1"; gene_id "Ledus.S2G045500"
Ledus.S2	AUGUSTUS	start_codon	3414563	3414565	.	-	0	transcript_id "Ledus.S2G045500.t1"; gene_id "Ledus.S2G045500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2757.t1 is derived from g191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3214804	3215209	.	-	.	Ledus.S1G017800
Ledus.S1	AUGUSTUS	transcript	3214804	3215209	.	-	.	transcript_id "Ledus.S1G017800.t1"; gene_id "Ledus.S1G017800"
Ledus.S1	AUGUSTUS	stop_codon	3214801	3214803	.	-	0	transcript_id "Ledus.S1G017800.t1"; gene_id "Ledus.S1G017800"
Ledus.S1	AUGUSTUS	CDS	3214804	3215004	1	-	0	transcript_id "Ledus.S1G017800.t1"; gene_id "Ledus.S1G017800"
Ledus.S1	AUGUSTUS	exon	3214804	3215004	.	-	.	transcript_id "Ledus.S1G017800.t1"; gene_id "Ledus.S1G017800"
Ledus.S1	AUGUSTUS	intron	3215005	3215191	.	-	.	transcript_id "Ledus.S1G017800.t1"; gene_id "Ledus.S1G017800"
Ledus.S1	AUGUSTUS	CDS	3215192	3215209	0.97	-	0	transcript_id "Ledus.S1G017800.t1"; gene_id "Ledus.S1G017800"
Ledus.S1	AUGUSTUS	exon	3215192	3215209	.	-	.	transcript_id "Ledus.S1G017800.t1"; gene_id "Ledus.S1G017800"
Ledus.S1	AUGUSTUS	start_codon	3215207	3215209	.	-	0	transcript_id "Ledus.S1G017800.t1"; gene_id "Ledus.S1G017800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6617.t1 is derived from g4060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32749119	32750876	.	-	.	Ledus.S1G403800
Ledus.S1	AUGUSTUS	transcript	32749119	32750876	.	-	.	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	stop_codon	32749116	32749118	.	-	0	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	CDS	32749119	32749135	0.25	-	2	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	exon	32749119	32749135	.	-	.	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	intron	32749136	32749304	.	-	.	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	CDS	32749305	32749398	0.25	-	0	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	exon	32749305	32749398	.	-	.	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	intron	32749399	32749674	.	-	.	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	CDS	32749675	32749877	0.84	-	2	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	exon	32749675	32749877	.	-	.	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	intron	32749878	32749957	.	-	.	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	CDS	32749958	32750069	1	-	0	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	exon	32749958	32750069	.	-	.	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	intron	32750070	32750179	.	-	.	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	CDS	32750180	32750438	0.99	-	1	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	exon	32750180	32750438	.	-	.	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	intron	32750439	32750586	.	-	.	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	CDS	32750587	32750876	0.66	-	0	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	exon	32750587	32750876	.	-	.	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
Ledus.S1	AUGUSTUS	start_codon	32750874	32750876	.	-	0	transcript_id "Ledus.S1G403800.t1"; gene_id "Ledus.S1G403800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4113.t1 is derived from g1549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14765375	14769832	.	-	.	Ledus.S1G153400
Ledus.S1	AUGUSTUS	transcript	14765375	14769832	.	-	.	transcript_id "Ledus.S1G153400.t1"; gene_id "Ledus.S1G153400"
Ledus.S1	AUGUSTUS	stop_codon	14765372	14765374	.	-	0	transcript_id "Ledus.S1G153400.t1"; gene_id "Ledus.S1G153400"
Ledus.S1	AUGUSTUS	CDS	14765375	14769436	0.79	-	0	transcript_id "Ledus.S1G153400.t1"; gene_id "Ledus.S1G153400"
Ledus.S1	AUGUSTUS	exon	14765375	14769436	.	-	.	transcript_id "Ledus.S1G153400.t1"; gene_id "Ledus.S1G153400"
Ledus.S1	AUGUSTUS	intron	14769437	14769547	.	-	.	transcript_id "Ledus.S1G153400.t1"; gene_id "Ledus.S1G153400"
Ledus.S1	AUGUSTUS	CDS	14769548	14769614	0.86	-	1	transcript_id "Ledus.S1G153400.t1"; gene_id "Ledus.S1G153400"
Ledus.S1	AUGUSTUS	exon	14769548	14769614	.	-	.	transcript_id "Ledus.S1G153400.t1"; gene_id "Ledus.S1G153400"
Ledus.S1	AUGUSTUS	intron	14769615	14769740	.	-	.	transcript_id "Ledus.S1G153400.t1"; gene_id "Ledus.S1G153400"
Ledus.S1	AUGUSTUS	CDS	14769741	14769832	0.81	-	0	transcript_id "Ledus.S1G153400.t1"; gene_id "Ledus.S1G153400"
Ledus.S1	AUGUSTUS	exon	14769741	14769832	.	-	.	transcript_id "Ledus.S1G153400.t1"; gene_id "Ledus.S1G153400"
Ledus.S1	AUGUSTUS	start_codon	14769830	14769832	.	-	0	transcript_id "Ledus.S1G153400.t1"; gene_id "Ledus.S1G153400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4303.t1 is derived from g1739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16121186	16122238	.	-	.	Ledus.S1G172400
Ledus.S1	AUGUSTUS	transcript	16121186	16122238	.	-	.	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	stop_codon	16121183	16121185	.	-	0	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	CDS	16121186	16121453	1	-	1	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	exon	16121186	16121453	.	-	.	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	intron	16121454	16121527	.	-	.	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	CDS	16121528	16121710	1	-	1	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	exon	16121528	16121710	.	-	.	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	intron	16121711	16121802	.	-	.	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	CDS	16121803	16122055	1	-	2	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	exon	16121803	16122055	.	-	.	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	intron	16122056	16122135	.	-	.	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	CDS	16122136	16122238	0.83	-	0	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	exon	16122136	16122238	.	-	.	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
Ledus.S1	AUGUSTUS	start_codon	16122236	16122238	.	-	0	transcript_id "Ledus.S1G172400.t1"; gene_id "Ledus.S1G172400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9558.t1 is derived from g10588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7768963	7771004	.	-	.	Ledus.S3G103500
Ledus.S3	AUGUSTUS	transcript	7768963	7771004	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	stop_codon	7768960	7768962	.	-	0	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	CDS	7768963	7769058	1	-	0	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	exon	7768963	7769058	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	intron	7769059	7769153	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	CDS	7769154	7769222	1	-	0	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	exon	7769154	7769222	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	intron	7769223	7769307	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	CDS	7769308	7769399	1	-	2	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	exon	7769308	7769399	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	intron	7769400	7769508	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	CDS	7769509	7769614	1	-	0	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	exon	7769509	7769614	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	intron	7769615	7769713	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	CDS	7769714	7770110	1	-	1	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	exon	7769714	7770110	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	intron	7770111	7770204	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	CDS	7770205	7770609	0.99	-	1	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	exon	7770205	7770609	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	intron	7770610	7770695	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	CDS	7770696	7770865	1	-	0	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	exon	7770696	7770865	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	intron	7770866	7770947	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	CDS	7770948	7771004	0.59	-	0	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	exon	7770948	7771004	.	-	.	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
Ledus.S3	AUGUSTUS	start_codon	7771002	7771004	.	-	0	transcript_id "Ledus.S3G103500.t1"; gene_id "Ledus.S3G103500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6770.t1 is derived from g4213.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34024993	34027108	.	+	.	Ledus.S1G419100
Ledus.S1	AUGUSTUS	transcript	34024993	34027108	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	start_codon	34024993	34024995	.	+	0	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	CDS	34024993	34025074	0.99	+	0	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	exon	34024993	34025074	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	intron	34025075	34025238	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	CDS	34025239	34025294	1	+	2	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	exon	34025239	34025294	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	intron	34025295	34025397	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	CDS	34025398	34025431	1	+	0	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	exon	34025398	34025431	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	intron	34025432	34025529	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	CDS	34025530	34025628	1	+	2	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	exon	34025530	34025628	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	intron	34025629	34025712	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	CDS	34025713	34025861	0.99	+	2	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	exon	34025713	34025861	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	intron	34025862	34025980	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	CDS	34025981	34026019	0.78	+	0	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	exon	34025981	34026019	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	intron	34026020	34026122	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	CDS	34026123	34026215	0.77	+	0	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	exon	34026123	34026215	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	intron	34026216	34026316	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	CDS	34026317	34026415	0.99	+	0	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	exon	34026317	34026415	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	intron	34026416	34026514	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	CDS	34026515	34026610	1	+	0	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	exon	34026515	34026610	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	intron	34026611	34026689	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	CDS	34026690	34026773	0.97	+	0	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	exon	34026690	34026773	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	intron	34026774	34026883	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	CDS	34026884	34026949	0.93	+	0	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	exon	34026884	34026949	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	intron	34026950	34027030	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	CDS	34027031	34027108	0.98	+	0	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	exon	34027031	34027108	.	+	.	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
Ledus.S1	AUGUSTUS	stop_codon	34027109	34027111	.	+	0	transcript_id "Ledus.S1G419100.t1"; gene_id "Ledus.S1G419100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1457.t1 is derived from g8318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10300351	10300713	.	+	.	Ledus.S2G133900
Ledus.S2	AUGUSTUS	transcript	10300351	10300713	.	+	.	transcript_id "Ledus.S2G133900.t1"; gene_id "Ledus.S2G133900"
Ledus.S2	AUGUSTUS	start_codon	10300351	10300353	.	+	0	transcript_id "Ledus.S2G133900.t1"; gene_id "Ledus.S2G133900"
Ledus.S2	AUGUSTUS	CDS	10300351	10300713	0.88	+	0	transcript_id "Ledus.S2G133900.t1"; gene_id "Ledus.S2G133900"
Ledus.S2	AUGUSTUS	exon	10300351	10300713	.	+	.	transcript_id "Ledus.S2G133900.t1"; gene_id "Ledus.S2G133900"
Ledus.S2	AUGUSTUS	stop_codon	10300714	10300716	.	+	0	transcript_id "Ledus.S2G133900.t1"; gene_id "Ledus.S2G133900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11799.t1 is derived from g5418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6835293	6836163	.	-	.	Ledus.S4G095500
Ledus.S4	AUGUSTUS	transcript	6835293	6836163	.	-	.	transcript_id "Ledus.S4G095500.t1"; gene_id "Ledus.S4G095500"
Ledus.S4	AUGUSTUS	stop_codon	6835290	6835292	.	-	0	transcript_id "Ledus.S4G095500.t1"; gene_id "Ledus.S4G095500"
Ledus.S4	AUGUSTUS	CDS	6835293	6835495	1	-	2	transcript_id "Ledus.S4G095500.t1"; gene_id "Ledus.S4G095500"
Ledus.S4	AUGUSTUS	exon	6835293	6835495	.	-	.	transcript_id "Ledus.S4G095500.t1"; gene_id "Ledus.S4G095500"
Ledus.S4	AUGUSTUS	intron	6835496	6835629	.	-	.	transcript_id "Ledus.S4G095500.t1"; gene_id "Ledus.S4G095500"
Ledus.S4	AUGUSTUS	CDS	6835630	6836005	0.94	-	0	transcript_id "Ledus.S4G095500.t1"; gene_id "Ledus.S4G095500"
Ledus.S4	AUGUSTUS	exon	6835630	6836005	.	-	.	transcript_id "Ledus.S4G095500.t1"; gene_id "Ledus.S4G095500"
Ledus.S4	AUGUSTUS	intron	6836006	6836160	.	-	.	transcript_id "Ledus.S4G095500.t1"; gene_id "Ledus.S4G095500"
Ledus.S4	AUGUSTUS	CDS	6836161	6836163	0.89	-	0	transcript_id "Ledus.S4G095500.t1"; gene_id "Ledus.S4G095500"
Ledus.S4	AUGUSTUS	exon	6836161	6836163	.	-	.	transcript_id "Ledus.S4G095500.t1"; gene_id "Ledus.S4G095500"
Ledus.S4	AUGUSTUS	start_codon	6836161	6836163	.	-	0	transcript_id "Ledus.S4G095500.t1"; gene_id "Ledus.S4G095500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4361.t1 is derived from g1797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16582570	16582767	.	-	.	Ledus.S1G178200
Ledus.S1	AUGUSTUS	transcript	16582570	16582767	.	-	.	transcript_id "Ledus.S1G178200.t1"; gene_id "Ledus.S1G178200"
Ledus.S1	AUGUSTUS	stop_codon	16582567	16582569	.	-	0	transcript_id "Ledus.S1G178200.t1"; gene_id "Ledus.S1G178200"
Ledus.S1	AUGUSTUS	CDS	16582570	16582767	0.62	-	0	transcript_id "Ledus.S1G178200.t1"; gene_id "Ledus.S1G178200"
Ledus.S1	AUGUSTUS	exon	16582570	16582767	.	-	.	transcript_id "Ledus.S1G178200.t1"; gene_id "Ledus.S1G178200"
Ledus.S1	AUGUSTUS	start_codon	16582765	16582767	.	-	0	transcript_id "Ledus.S1G178200.t1"; gene_id "Ledus.S1G178200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10048.t1 is derived from g11078.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12180569	12182925	.	-	.	Ledus.S3G152500
Ledus.S3	AUGUSTUS	transcript	12180569	12182925	.	-	.	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	stop_codon	12180566	12180568	.	-	0	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	CDS	12180569	12180845	0.64	-	1	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	exon	12180569	12180845	.	-	.	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	intron	12180846	12180939	.	-	.	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	CDS	12180940	12181007	0.93	-	0	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	exon	12180940	12181007	.	-	.	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	intron	12181008	12181074	.	-	.	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	CDS	12181075	12182788	0.67	-	1	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	exon	12181075	12182788	.	-	.	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	intron	12182789	12182875	.	-	.	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	CDS	12182876	12182925	0.6	-	0	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	exon	12182876	12182925	.	-	.	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
Ledus.S3	AUGUSTUS	start_codon	12182923	12182925	.	-	0	transcript_id "Ledus.S3G152500.t1"; gene_id "Ledus.S3G152500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5490.t1 is derived from g2929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24511699	24514058	.	+	.	Ledus.S1G291100
Ledus.S1	AUGUSTUS	transcript	24511699	24514058	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	start_codon	24511699	24511701	.	+	0	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	CDS	24511699	24511767	0.4	+	0	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	exon	24511699	24511767	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	intron	24511768	24511918	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	CDS	24511919	24512083	1	+	0	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	exon	24511919	24512083	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	intron	24512084	24512275	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	CDS	24512276	24512570	1	+	0	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	exon	24512276	24512570	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	intron	24512571	24512714	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	CDS	24512715	24512929	1	+	2	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	exon	24512715	24512929	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	intron	24512930	24513012	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	CDS	24513013	24513318	1	+	0	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	exon	24513013	24513318	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	intron	24513319	24513458	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	CDS	24513459	24513522	1	+	0	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	exon	24513459	24513522	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	intron	24513523	24513616	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	CDS	24513617	24513856	1	+	2	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	exon	24513617	24513856	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	intron	24513857	24513933	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	CDS	24513934	24514058	0.98	+	2	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	exon	24513934	24514058	.	+	.	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
Ledus.S1	AUGUSTUS	stop_codon	24514059	24514061	.	+	0	transcript_id "Ledus.S1G291100.t1"; gene_id "Ledus.S1G291100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9382.t1 is derived from g10412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6453102	6455447	.	-	.	Ledus.S3G085900
Ledus.S3	AUGUSTUS	transcript	6453102	6455447	.	-	.	transcript_id "Ledus.S3G085900.t1"; gene_id "Ledus.S3G085900"
Ledus.S3	AUGUSTUS	stop_codon	6453099	6453101	.	-	0	transcript_id "Ledus.S3G085900.t1"; gene_id "Ledus.S3G085900"
Ledus.S3	AUGUSTUS	CDS	6453102	6455447	0.94	-	0	transcript_id "Ledus.S3G085900.t1"; gene_id "Ledus.S3G085900"
Ledus.S3	AUGUSTUS	exon	6453102	6455447	.	-	.	transcript_id "Ledus.S3G085900.t1"; gene_id "Ledus.S3G085900"
Ledus.S3	AUGUSTUS	start_codon	6455445	6455447	.	-	0	transcript_id "Ledus.S3G085900.t1"; gene_id "Ledus.S3G085900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10965.t1 is derived from g4583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	930172	931299	.	-	.	Ledus.S4G012100
Ledus.S4	AUGUSTUS	transcript	930172	931299	.	-	.	transcript_id "Ledus.S4G012100.t1"; gene_id "Ledus.S4G012100"
Ledus.S4	AUGUSTUS	stop_codon	930169	930171	.	-	0	transcript_id "Ledus.S4G012100.t1"; gene_id "Ledus.S4G012100"
Ledus.S4	AUGUSTUS	CDS	930172	931299	0.99	-	0	transcript_id "Ledus.S4G012100.t1"; gene_id "Ledus.S4G012100"
Ledus.S4	AUGUSTUS	exon	930172	931299	.	-	.	transcript_id "Ledus.S4G012100.t1"; gene_id "Ledus.S4G012100"
Ledus.S4	AUGUSTUS	start_codon	931297	931299	.	-	0	transcript_id "Ledus.S4G012100.t1"; gene_id "Ledus.S4G012100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3501.t1 is derived from g936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8814588	8815898	.	-	.	Ledus.S1G092200
Ledus.S1	AUGUSTUS	transcript	8814588	8815898	.	-	.	transcript_id "Ledus.S1G092200.t1"; gene_id "Ledus.S1G092200"
Ledus.S1	AUGUSTUS	stop_codon	8814585	8814587	.	-	0	transcript_id "Ledus.S1G092200.t1"; gene_id "Ledus.S1G092200"
Ledus.S1	AUGUSTUS	CDS	8814588	8815786	0.98	-	2	transcript_id "Ledus.S1G092200.t1"; gene_id "Ledus.S1G092200"
Ledus.S1	AUGUSTUS	exon	8814588	8815786	.	-	.	transcript_id "Ledus.S1G092200.t1"; gene_id "Ledus.S1G092200"
Ledus.S1	AUGUSTUS	intron	8815787	8815864	.	-	.	transcript_id "Ledus.S1G092200.t1"; gene_id "Ledus.S1G092200"
Ledus.S1	AUGUSTUS	CDS	8815865	8815898	0.34	-	0	transcript_id "Ledus.S1G092200.t1"; gene_id "Ledus.S1G092200"
Ledus.S1	AUGUSTUS	exon	8815865	8815898	.	-	.	transcript_id "Ledus.S1G092200.t1"; gene_id "Ledus.S1G092200"
Ledus.S1	AUGUSTUS	start_codon	8815896	8815898	.	-	0	transcript_id "Ledus.S1G092200.t1"; gene_id "Ledus.S1G092200"
# This transcript jg9708.t2 is derived from g10738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9709.t1 is derived from g10739.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9235301	9235642	.	-	.	Ledus.S3G118600
Ledus.S3	AUGUSTUS	transcript	9235301	9235642	.	-	.	transcript_id "Ledus.S3G118600.t1"; gene_id "Ledus.S3G118600"
Ledus.S3	AUGUSTUS	stop_codon	9235298	9235300	.	-	0	transcript_id "Ledus.S3G118600.t1"; gene_id "Ledus.S3G118600"
Ledus.S3	AUGUSTUS	CDS	9235301	9235642	0.53	-	0	transcript_id "Ledus.S3G118600.t1"; gene_id "Ledus.S3G118600"
Ledus.S3	AUGUSTUS	exon	9235301	9235642	.	-	.	transcript_id "Ledus.S3G118600.t1"; gene_id "Ledus.S3G118600"
Ledus.S3	AUGUSTUS	start_codon	9235640	9235642	.	-	0	transcript_id "Ledus.S3G118600.t1"; gene_id "Ledus.S3G118600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6380.t1 is derived from g3823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30908840	30912830	.	-	.	Ledus.S1G380100
Ledus.S1	AUGUSTUS	transcript	30908840	30912830	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	stop_codon	30908837	30908839	.	-	0	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	CDS	30908840	30908932	1	-	0	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	exon	30908840	30908932	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	intron	30908933	30909048	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	CDS	30909049	30909180	1	-	0	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	exon	30909049	30909180	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	intron	30909181	30909255	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	CDS	30909256	30910020	1	-	0	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	exon	30909256	30910020	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	intron	30910021	30910108	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	CDS	30910109	30910459	1	-	0	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	exon	30910109	30910459	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	intron	30910460	30910651	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	CDS	30910652	30911008	0.93	-	0	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	exon	30910652	30911008	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	intron	30911009	30911107	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	CDS	30911108	30911338	1	-	0	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	exon	30911108	30911338	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	intron	30911339	30911428	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	CDS	30911429	30911910	1	-	2	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	exon	30911429	30911910	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	intron	30911911	30912013	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	CDS	30912014	30912404	0.99	-	0	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	exon	30912014	30912404	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	intron	30912405	30912491	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	CDS	30912492	30912830	0.74	-	0	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	exon	30912492	30912830	.	-	.	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
Ledus.S1	AUGUSTUS	start_codon	30912828	30912830	.	-	0	transcript_id "Ledus.S1G380100.t1"; gene_id "Ledus.S1G380100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1902.t1 is derived from g8765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13273834	13276778	.	-	.	Ledus.S2G178400
Ledus.S2	AUGUSTUS	transcript	13273834	13276778	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	stop_codon	13273831	13273833	.	-	0	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13273834	13273971	0.98	-	0	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13273834	13273971	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13273972	13274058	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13274059	13274181	1	-	0	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13274059	13274181	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13274182	13274272	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13274273	13274418	1	-	2	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13274273	13274418	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13274419	13274508	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13274509	13274717	0.84	-	1	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13274509	13274717	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13274718	13274859	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13274860	13274938	1	-	2	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13274860	13274938	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13274939	13275021	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13275022	13275118	1	-	0	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13275022	13275118	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13275119	13275262	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13275263	13275325	0.69	-	0	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13275263	13275325	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13275326	13275429	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13275430	13275507	1	-	0	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13275430	13275507	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13275508	13275637	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13275638	13275754	0.98	-	0	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13275638	13275754	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13275755	13275868	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13275869	13275940	0.78	-	0	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13275869	13275940	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13275941	13276043	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13276044	13276145	0.65	-	0	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13276044	13276145	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13276146	13276262	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13276263	13276437	0.65	-	1	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13276263	13276437	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13276438	13276547	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13276548	13276603	0.89	-	0	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13276548	13276603	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	intron	13276604	13276709	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	CDS	13276710	13276778	0.88	-	0	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	exon	13276710	13276778	.	-	.	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
Ledus.S2	AUGUSTUS	start_codon	13276776	13276778	.	-	0	transcript_id "Ledus.S2G178400.t1"; gene_id "Ledus.S2G178400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11312.t1 is derived from g4930.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3502282	3502711	.	-	.	Ledus.S4G046800
Ledus.S4	AUGUSTUS	transcript	3502282	3502711	.	-	.	transcript_id "Ledus.S4G046800.t1"; gene_id "Ledus.S4G046800"
Ledus.S4	AUGUSTUS	stop_codon	3502279	3502281	.	-	0	transcript_id "Ledus.S4G046800.t1"; gene_id "Ledus.S4G046800"
Ledus.S4	AUGUSTUS	CDS	3502282	3502416	0.95	-	0	transcript_id "Ledus.S4G046800.t1"; gene_id "Ledus.S4G046800"
Ledus.S4	AUGUSTUS	exon	3502282	3502416	.	-	.	transcript_id "Ledus.S4G046800.t1"; gene_id "Ledus.S4G046800"
Ledus.S4	AUGUSTUS	intron	3502417	3502636	.	-	.	transcript_id "Ledus.S4G046800.t1"; gene_id "Ledus.S4G046800"
Ledus.S4	AUGUSTUS	CDS	3502637	3502711	0.4	-	0	transcript_id "Ledus.S4G046800.t1"; gene_id "Ledus.S4G046800"
Ledus.S4	AUGUSTUS	exon	3502637	3502711	.	-	.	transcript_id "Ledus.S4G046800.t1"; gene_id "Ledus.S4G046800"
Ledus.S4	AUGUSTUS	start_codon	3502709	3502711	.	-	0	transcript_id "Ledus.S4G046800.t1"; gene_id "Ledus.S4G046800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11601.t1 is derived from g5219.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5471157	5473293	.	+	.	Ledus.S4G075700
Ledus.S4	AUGUSTUS	transcript	5471157	5473293	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	start_codon	5471157	5471159	.	+	0	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	CDS	5471157	5471188	0.92	+	0	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	exon	5471157	5471188	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	intron	5471189	5471276	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	CDS	5471277	5471347	1	+	1	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	exon	5471277	5471347	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	intron	5471348	5471527	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	CDS	5471528	5471577	1	+	2	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	exon	5471528	5471577	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	intron	5471578	5471666	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	CDS	5471667	5471740	1	+	0	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	exon	5471667	5471740	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	intron	5471741	5471959	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	CDS	5471960	5472022	1	+	1	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	exon	5471960	5472022	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	intron	5472023	5472313	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	CDS	5472314	5472401	1	+	1	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	exon	5472314	5472401	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	intron	5472402	5472546	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	CDS	5472547	5472612	1	+	0	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	exon	5472547	5472612	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	intron	5472613	5472726	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	CDS	5472727	5472806	1	+	0	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	exon	5472727	5472806	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	intron	5472807	5472931	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	CDS	5472932	5473003	0.85	+	1	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	exon	5472932	5473003	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	intron	5473004	5473223	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	CDS	5473224	5473293	1	+	1	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	exon	5473224	5473293	.	+	.	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
Ledus.S4	AUGUSTUS	stop_codon	5473294	5473296	.	+	0	transcript_id "Ledus.S4G075700.t1"; gene_id "Ledus.S4G075700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10567.t1 is derived from g11597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16194953	16196010	.	-	.	Ledus.S3G204400
Ledus.S3	AUGUSTUS	transcript	16194953	16196010	.	-	.	transcript_id "Ledus.S3G204400.t1"; gene_id "Ledus.S3G204400"
Ledus.S3	AUGUSTUS	stop_codon	16194950	16194952	.	-	0	transcript_id "Ledus.S3G204400.t1"; gene_id "Ledus.S3G204400"
Ledus.S3	AUGUSTUS	CDS	16194953	16195489	1	-	0	transcript_id "Ledus.S3G204400.t1"; gene_id "Ledus.S3G204400"
Ledus.S3	AUGUSTUS	exon	16194953	16195489	.	-	.	transcript_id "Ledus.S3G204400.t1"; gene_id "Ledus.S3G204400"
Ledus.S3	AUGUSTUS	intron	16195490	16195568	.	-	.	transcript_id "Ledus.S3G204400.t1"; gene_id "Ledus.S3G204400"
Ledus.S3	AUGUSTUS	CDS	16195569	16195804	1	-	2	transcript_id "Ledus.S3G204400.t1"; gene_id "Ledus.S3G204400"
Ledus.S3	AUGUSTUS	exon	16195569	16195804	.	-	.	transcript_id "Ledus.S3G204400.t1"; gene_id "Ledus.S3G204400"
Ledus.S3	AUGUSTUS	intron	16195805	16195880	.	-	.	transcript_id "Ledus.S3G204400.t1"; gene_id "Ledus.S3G204400"
Ledus.S3	AUGUSTUS	CDS	16195881	16196010	0.62	-	0	transcript_id "Ledus.S3G204400.t1"; gene_id "Ledus.S3G204400"
Ledus.S3	AUGUSTUS	exon	16195881	16196010	.	-	.	transcript_id "Ledus.S3G204400.t1"; gene_id "Ledus.S3G204400"
Ledus.S3	AUGUSTUS	start_codon	16196008	16196010	.	-	0	transcript_id "Ledus.S3G204400.t1"; gene_id "Ledus.S3G204400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5331.t1 is derived from g2770.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23404701	23406151	.	-	.	Ledus.S1G275200
Ledus.S1	AUGUSTUS	transcript	23404701	23406151	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	stop_codon	23404698	23404700	.	-	0	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	CDS	23404701	23404772	1	-	0	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	exon	23404701	23404772	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	intron	23404773	23404851	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	CDS	23404852	23404961	1	-	2	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	exon	23404852	23404961	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	intron	23404962	23405035	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	CDS	23405036	23405174	1	-	0	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	exon	23405036	23405174	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	intron	23405175	23405254	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	CDS	23405255	23405353	1	-	0	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	exon	23405255	23405353	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	intron	23405354	23405439	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	CDS	23405440	23405541	1	-	0	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	exon	23405440	23405541	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	intron	23405542	23405625	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	CDS	23405626	23405696	1	-	2	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	exon	23405626	23405696	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	intron	23405697	23405796	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	CDS	23405797	23405883	1	-	2	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	exon	23405797	23405883	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	intron	23405884	23405958	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	CDS	23405959	23406151	1	-	0	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	exon	23405959	23406151	.	-	.	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
Ledus.S1	AUGUSTUS	start_codon	23406149	23406151	.	-	0	transcript_id "Ledus.S1G275200.t1"; gene_id "Ledus.S1G275200"
# This transcript jg8158.t2 is derived from g12829.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8159.t1 is derived from g12830.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9496870	9499421	.	-	.	Ledus.S5G093700
Ledus.S5	AUGUSTUS	transcript	9496870	9499421	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	stop_codon	9496867	9496869	.	-	0	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	CDS	9496870	9496965	0.84	-	0	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	exon	9496870	9496965	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	intron	9496966	9497140	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	CDS	9497141	9497293	0.64	-	0	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	exon	9497141	9497293	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	intron	9497294	9497477	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	CDS	9497478	9497554	0.48	-	2	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	exon	9497478	9497554	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	intron	9497555	9497656	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	CDS	9497657	9497933	0.88	-	0	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	exon	9497657	9497933	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	intron	9497934	9498048	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	CDS	9498049	9498207	0.97	-	0	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	exon	9498049	9498207	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	intron	9498208	9498318	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	CDS	9498319	9498495	1	-	0	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	exon	9498319	9498495	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	intron	9498496	9498574	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	CDS	9498575	9498795	1	-	2	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	exon	9498575	9498795	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	intron	9498796	9498874	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	CDS	9498875	9498976	1	-	2	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	exon	9498875	9498976	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	intron	9498977	9499131	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	CDS	9499132	9499218	1	-	2	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	exon	9499132	9499218	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	intron	9499219	9499300	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	CDS	9499301	9499421	0.6	-	0	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	exon	9499301	9499421	.	-	.	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
Ledus.S5	AUGUSTUS	start_codon	9499419	9499421	.	-	0	transcript_id "Ledus.S5G093700.t1"; gene_id "Ledus.S5G093700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2046.t1 is derived from g8909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14317963	14320338	.	+	.	Ledus.S2G192800
Ledus.S2	AUGUSTUS	transcript	14317963	14320338	.	+	.	transcript_id "Ledus.S2G192800.t1"; gene_id "Ledus.S2G192800"
Ledus.S2	AUGUSTUS	start_codon	14317963	14317965	.	+	0	transcript_id "Ledus.S2G192800.t1"; gene_id "Ledus.S2G192800"
Ledus.S2	AUGUSTUS	CDS	14317963	14320338	0.54	+	0	transcript_id "Ledus.S2G192800.t1"; gene_id "Ledus.S2G192800"
Ledus.S2	AUGUSTUS	exon	14317963	14320338	.	+	.	transcript_id "Ledus.S2G192800.t1"; gene_id "Ledus.S2G192800"
Ledus.S2	AUGUSTUS	stop_codon	14320339	14320341	.	+	0	transcript_id "Ledus.S2G192800.t1"; gene_id "Ledus.S2G192800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7650.t1 is derived from g12321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4813209	4814696	.	-	.	Ledus.S5G042800
Ledus.S5	AUGUSTUS	transcript	4813209	4814696	.	-	.	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	stop_codon	4813206	4813208	.	-	0	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	CDS	4813209	4813412	0.81	-	0	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	exon	4813209	4813412	.	-	.	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	intron	4813413	4813515	.	-	.	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	CDS	4813516	4813653	0.52	-	0	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	exon	4813516	4813653	.	-	.	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	intron	4813654	4813784	.	-	.	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	CDS	4813785	4813889	0.45	-	0	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	exon	4813785	4813889	.	-	.	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	intron	4813890	4814060	.	-	.	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	CDS	4814061	4814696	0.15	-	0	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	exon	4814061	4814696	.	-	.	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
Ledus.S5	AUGUSTUS	start_codon	4814694	4814696	.	-	0	transcript_id "Ledus.S5G042800.t1"; gene_id "Ledus.S5G042800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9462.t1 is derived from g10492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7148496	7150442	.	+	.	Ledus.S3G093900
Ledus.S3	AUGUSTUS	transcript	7148496	7150442	.	+	.	transcript_id "Ledus.S3G093900.t1"; gene_id "Ledus.S3G093900"
Ledus.S3	AUGUSTUS	start_codon	7148496	7148498	.	+	0	transcript_id "Ledus.S3G093900.t1"; gene_id "Ledus.S3G093900"
Ledus.S3	AUGUSTUS	CDS	7148496	7150442	0.56	+	0	transcript_id "Ledus.S3G093900.t1"; gene_id "Ledus.S3G093900"
Ledus.S3	AUGUSTUS	exon	7148496	7150442	.	+	.	transcript_id "Ledus.S3G093900.t1"; gene_id "Ledus.S3G093900"
Ledus.S3	AUGUSTUS	stop_codon	7150443	7150445	.	+	0	transcript_id "Ledus.S3G093900.t1"; gene_id "Ledus.S3G093900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10982.t1 is derived from g4600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	993186	994425	.	+	.	Ledus.S4G013800
Ledus.S4	AUGUSTUS	transcript	993186	994425	.	+	.	transcript_id "Ledus.S4G013800.t1"; gene_id "Ledus.S4G013800"
Ledus.S4	AUGUSTUS	start_codon	993186	993188	.	+	0	transcript_id "Ledus.S4G013800.t1"; gene_id "Ledus.S4G013800"
Ledus.S4	AUGUSTUS	CDS	993186	993720	0.57	+	0	transcript_id "Ledus.S4G013800.t1"; gene_id "Ledus.S4G013800"
Ledus.S4	AUGUSTUS	exon	993186	993720	.	+	.	transcript_id "Ledus.S4G013800.t1"; gene_id "Ledus.S4G013800"
Ledus.S4	AUGUSTUS	intron	993721	993850	.	+	.	transcript_id "Ledus.S4G013800.t1"; gene_id "Ledus.S4G013800"
Ledus.S4	AUGUSTUS	CDS	993851	994425	0.52	+	2	transcript_id "Ledus.S4G013800.t1"; gene_id "Ledus.S4G013800"
Ledus.S4	AUGUSTUS	exon	993851	994425	.	+	.	transcript_id "Ledus.S4G013800.t1"; gene_id "Ledus.S4G013800"
Ledus.S4	AUGUSTUS	stop_codon	994426	994428	.	+	0	transcript_id "Ledus.S4G013800.t1"; gene_id "Ledus.S4G013800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9084.t1 is derived from g10114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4446599	4449240	.	-	.	Ledus.S3G056100
Ledus.S3	AUGUSTUS	transcript	4446599	4449240	.	-	.	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	stop_codon	4446596	4446598	.	-	0	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	CDS	4446599	4446766	0.96	-	0	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	exon	4446599	4446766	.	-	.	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	intron	4446767	4446846	.	-	.	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	CDS	4446847	4447359	1	-	0	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	exon	4446847	4447359	.	-	.	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	intron	4447360	4447445	.	-	.	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	CDS	4447446	4448857	1	-	2	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	exon	4447446	4448857	.	-	.	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	intron	4448858	4448984	.	-	.	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	CDS	4448985	4449240	0.7	-	0	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	exon	4448985	4449240	.	-	.	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
Ledus.S3	AUGUSTUS	start_codon	4449238	4449240	.	-	0	transcript_id "Ledus.S3G056100.t1"; gene_id "Ledus.S3G056100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10700.t1 is derived from g11730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17270538	17272701	.	+	.	Ledus.S3G217700
Ledus.S3	AUGUSTUS	transcript	17270538	17272701	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	start_codon	17270538	17270540	.	+	0	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17270538	17270753	0.84	+	0	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17270538	17270753	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17270754	17270841	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17270842	17270979	1	+	0	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17270842	17270979	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17270980	17271061	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17271062	17271229	1	+	0	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17271062	17271229	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17271230	17271315	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17271316	17271429	1	+	0	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17271316	17271429	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17271430	17271497	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17271498	17271604	1	+	0	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17271498	17271604	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17271605	17272246	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17272247	17272370	1	+	1	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17272247	17272370	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17272371	17272560	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17272561	17272701	0.98	+	0	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17272561	17272701	.	+	.	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	stop_codon	17272702	17272704	.	+	0	transcript_id "Ledus.S3G217700.t1"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	transcript	17270538	17272701	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	start_codon	17270538	17270540	.	+	0	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17270538	17270613	0.47	+	0	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17270538	17270613	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17270614	17270689	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17270690	17270753	1	+	2	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17270690	17270753	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17270754	17270837	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17270838	17270979	1	+	1	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17270838	17270979	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17270980	17271061	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17271062	17271229	1	+	0	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17271062	17271229	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17271230	17271315	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17271316	17271429	1	+	0	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17271316	17271429	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17271430	17271497	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17271498	17271604	1	+	0	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17271498	17271604	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17271605	17272246	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17272247	17272370	1	+	1	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17272247	17272370	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	intron	17272371	17272560	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	CDS	17272561	17272701	0.98	+	0	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	exon	17272561	17272701	.	+	.	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
Ledus.S3	AUGUSTUS	stop_codon	17272702	17272704	.	+	0	transcript_id "Ledus.S3G217700.t2"; gene_id "Ledus.S3G217700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5389.t1 is derived from g2828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23969766	23970116	.	+	.	Ledus.S1G281000
Ledus.S1	AUGUSTUS	transcript	23969766	23970116	.	+	.	transcript_id "Ledus.S1G281000.t1"; gene_id "Ledus.S1G281000"
Ledus.S1	AUGUSTUS	start_codon	23969766	23969768	.	+	0	transcript_id "Ledus.S1G281000.t1"; gene_id "Ledus.S1G281000"
Ledus.S1	AUGUSTUS	CDS	23969766	23969844	0.96	+	0	transcript_id "Ledus.S1G281000.t1"; gene_id "Ledus.S1G281000"
Ledus.S1	AUGUSTUS	exon	23969766	23969844	.	+	.	transcript_id "Ledus.S1G281000.t1"; gene_id "Ledus.S1G281000"
Ledus.S1	AUGUSTUS	intron	23969845	23969914	.	+	.	transcript_id "Ledus.S1G281000.t1"; gene_id "Ledus.S1G281000"
Ledus.S1	AUGUSTUS	CDS	23969915	23969997	1	+	2	transcript_id "Ledus.S1G281000.t1"; gene_id "Ledus.S1G281000"
Ledus.S1	AUGUSTUS	exon	23969915	23969997	.	+	.	transcript_id "Ledus.S1G281000.t1"; gene_id "Ledus.S1G281000"
Ledus.S1	AUGUSTUS	intron	23969998	23970080	.	+	.	transcript_id "Ledus.S1G281000.t1"; gene_id "Ledus.S1G281000"
Ledus.S1	AUGUSTUS	CDS	23970081	23970116	1	+	0	transcript_id "Ledus.S1G281000.t1"; gene_id "Ledus.S1G281000"
Ledus.S1	AUGUSTUS	exon	23970081	23970116	.	+	.	transcript_id "Ledus.S1G281000.t1"; gene_id "Ledus.S1G281000"
Ledus.S1	AUGUSTUS	stop_codon	23970117	23970119	.	+	0	transcript_id "Ledus.S1G281000.t1"; gene_id "Ledus.S1G281000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8591.t1 is derived from g9621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	486284	489174	.	+	.	Ledus.S3G006800
Ledus.S3	AUGUSTUS	transcript	486284	489174	.	+	.	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	start_codon	486284	486286	.	+	0	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	CDS	486284	486288	0.53	+	0	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	exon	486284	486288	.	+	.	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	intron	486289	486378	.	+	.	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	CDS	486379	486701	0.88	+	1	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	exon	486379	486701	.	+	.	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	intron	486702	486946	.	+	.	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	CDS	486947	488870	0.4	+	2	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	exon	486947	488870	.	+	.	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	intron	488871	488951	.	+	.	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	CDS	488952	489011	0.53	+	1	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	exon	488952	489011	.	+	.	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	intron	489012	489146	.	+	.	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	CDS	489147	489174	0.95	+	1	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	exon	489147	489174	.	+	.	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
Ledus.S3	AUGUSTUS	stop_codon	489175	489177	.	+	0	transcript_id "Ledus.S3G006800.t1"; gene_id "Ledus.S3G006800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1376.t1 is derived from g8237.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9594737	9596356	.	+	.	Ledus.S2G125800
Ledus.S2	AUGUSTUS	transcript	9594737	9596356	.	+	.	transcript_id "Ledus.S2G125800.t1"; gene_id "Ledus.S2G125800"
Ledus.S2	AUGUSTUS	start_codon	9594737	9594739	.	+	0	transcript_id "Ledus.S2G125800.t1"; gene_id "Ledus.S2G125800"
Ledus.S2	AUGUSTUS	CDS	9594737	9596356	0.76	+	0	transcript_id "Ledus.S2G125800.t1"; gene_id "Ledus.S2G125800"
Ledus.S2	AUGUSTUS	exon	9594737	9596356	.	+	.	transcript_id "Ledus.S2G125800.t1"; gene_id "Ledus.S2G125800"
Ledus.S2	AUGUSTUS	stop_codon	9596357	9596359	.	+	0	transcript_id "Ledus.S2G125800.t1"; gene_id "Ledus.S2G125800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7772.t1 is derived from g12443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6425835	6427417	.	-	.	Ledus.S5G055000
Ledus.S5	AUGUSTUS	transcript	6425835	6427417	.	-	.	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	stop_codon	6425832	6425834	.	-	0	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	CDS	6425835	6426090	0.99	-	1	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	exon	6425835	6426090	.	-	.	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	intron	6426091	6426173	.	-	.	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	CDS	6426174	6426298	1	-	0	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	exon	6426174	6426298	.	-	.	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	intron	6426299	6426382	.	-	.	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	CDS	6426383	6426568	0.93	-	0	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	exon	6426383	6426568	.	-	.	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	intron	6426569	6426673	.	-	.	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	CDS	6426674	6426817	0.93	-	0	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	exon	6426674	6426817	.	-	.	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	intron	6426818	6427011	.	-	.	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	CDS	6427012	6427070	0.57	-	2	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	exon	6427012	6427070	.	-	.	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	intron	6427071	6427155	.	-	.	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	CDS	6427156	6427417	0.77	-	0	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	exon	6427156	6427417	.	-	.	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
Ledus.S5	AUGUSTUS	start_codon	6427415	6427417	.	-	0	transcript_id "Ledus.S5G055000.t1"; gene_id "Ledus.S5G055000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11296.t1 is derived from g4914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3438698	3443052	.	-	.	Ledus.S4G045200
Ledus.S4	AUGUSTUS	transcript	3438698	3443052	.	-	.	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	stop_codon	3438695	3438697	.	-	0	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	CDS	3438698	3442003	1	-	0	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	exon	3438698	3442003	.	-	.	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	intron	3442004	3442085	.	-	.	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	CDS	3442086	3442165	1	-	2	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	exon	3442086	3442165	.	-	.	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	intron	3442166	3442245	.	-	.	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	CDS	3442246	3442399	1	-	0	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	exon	3442246	3442399	.	-	.	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	intron	3442400	3442484	.	-	.	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	CDS	3442485	3442567	1	-	2	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	exon	3442485	3442567	.	-	.	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	intron	3442568	3442659	.	-	.	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	CDS	3442660	3442816	1	-	0	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	exon	3442660	3442816	.	-	.	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	intron	3442817	3443031	.	-	.	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	CDS	3443032	3443052	0.67	-	0	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	exon	3443032	3443052	.	-	.	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
Ledus.S4	AUGUSTUS	start_codon	3443050	3443052	.	-	0	transcript_id "Ledus.S4G045200.t1"; gene_id "Ledus.S4G045200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11812.t1 is derived from g5431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6886625	6896665	.	+	.	Ledus.S4G096800
Ledus.S4	AUGUSTUS	transcript	6886625	6896665	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	start_codon	6886625	6886627	.	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6886625	6886707	0.9	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6886625	6886707	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6886708	6886807	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6886808	6886907	1	+	1	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6886808	6886907	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6886908	6886983	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6886984	6887084	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6886984	6887084	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6887085	6887240	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6887241	6887367	0.94	+	1	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6887241	6887367	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6887368	6887466	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6887467	6887597	0.85	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6887467	6887597	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6887598	6887706	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6887707	6887762	1	+	1	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6887707	6887762	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6887763	6887944	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6887945	6888006	0.89	+	2	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6887945	6888006	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6888007	6888103	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6888104	6888163	0.88	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6888104	6888163	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6888164	6888407	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6888408	6888424	0.52	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6888408	6888424	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6888425	6888640	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6888641	6888749	0.64	+	1	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6888641	6888749	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6888750	6888828	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6888829	6888921	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6888829	6888921	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6888922	6889424	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6889425	6889513	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6889425	6889513	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6889514	6889611	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6889612	6889738	1	+	1	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6889612	6889738	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6889739	6889809	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6889810	6889881	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6889810	6889881	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6889882	6889974	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6889975	6890043	0.98	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6889975	6890043	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6890044	6890152	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6890153	6890221	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6890153	6890221	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6890222	6890417	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6890418	6890488	0.67	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6890418	6890488	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6890489	6890587	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6890588	6890675	0.61	+	1	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6890588	6890675	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6890676	6890761	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6890762	6890944	0.24	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6890762	6890944	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6890945	6891018	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6891019	6891089	0.87	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6891019	6891089	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6891090	6891220	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6891221	6891317	0.96	+	1	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6891221	6891317	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6891318	6891529	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6891530	6891655	0.99	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6891530	6891655	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6891656	6891752	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6891753	6891809	0.98	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6891753	6891809	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6891810	6891932	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6891933	6892097	0.46	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6891933	6892097	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6892098	6892204	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6892205	6892324	0.6	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6892205	6892324	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6892325	6892437	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6892438	6892587	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6892438	6892587	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6892588	6892718	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6892719	6892916	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6892719	6892916	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6892917	6893002	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6893003	6893054	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6893003	6893054	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6893055	6893145	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6893146	6893207	1	+	2	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6893146	6893207	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6893208	6893282	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6893283	6893360	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6893283	6893360	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6893361	6893457	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6893458	6893619	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6893458	6893619	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6893620	6893704	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6893705	6893884	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6893705	6893884	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6893885	6894002	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6894003	6894068	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6894003	6894068	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6894069	6894217	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6894218	6894351	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6894218	6894351	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6894352	6894447	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6894448	6894589	0.93	+	1	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6894448	6894589	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6894590	6894709	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6894710	6894856	0.97	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6894710	6894856	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6894857	6894935	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6894936	6895016	0.92	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6894936	6895016	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6895017	6895141	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6895142	6895261	0.53	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6895142	6895261	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6895262	6895346	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6895347	6895433	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6895347	6895433	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6895434	6895532	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6895533	6895658	0.93	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6895533	6895658	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6895659	6895741	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6895742	6895811	0.99	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6895742	6895811	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6895812	6895952	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6895953	6896023	1	+	2	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6895953	6896023	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6896024	6896123	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6896124	6896228	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6896124	6896228	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6896229	6896322	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6896323	6896482	1	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6896323	6896482	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	intron	6896483	6896570	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	CDS	6896571	6896665	0.65	+	2	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	exon	6896571	6896665	.	+	.	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
Ledus.S4	AUGUSTUS	stop_codon	6896666	6896668	.	+	0	transcript_id "Ledus.S4G096800.t1"; gene_id "Ledus.S4G096800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7441.t1 is derived from g12112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2702937	2703557	.	+	.	Ledus.S5G021900
Ledus.S5	AUGUSTUS	transcript	2702937	2703557	.	+	.	transcript_id "Ledus.S5G021900.t1"; gene_id "Ledus.S5G021900"
Ledus.S5	AUGUSTUS	start_codon	2702937	2702939	.	+	0	transcript_id "Ledus.S5G021900.t1"; gene_id "Ledus.S5G021900"
Ledus.S5	AUGUSTUS	CDS	2702937	2703557	0.48	+	0	transcript_id "Ledus.S5G021900.t1"; gene_id "Ledus.S5G021900"
Ledus.S5	AUGUSTUS	exon	2702937	2703557	.	+	.	transcript_id "Ledus.S5G021900.t1"; gene_id "Ledus.S5G021900"
Ledus.S5	AUGUSTUS	stop_codon	2703558	2703560	.	+	0	transcript_id "Ledus.S5G021900.t1"; gene_id "Ledus.S5G021900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11749.t1 is derived from g5368.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6553759	6559196	.	-	.	Ledus.S4G090500
Ledus.S4	AUGUSTUS	transcript	6553759	6559196	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	stop_codon	6553756	6553758	.	-	0	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6553759	6553993	0.84	-	1	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6553759	6553993	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6553994	6554098	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6554099	6554220	1	-	0	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6554099	6554220	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6554221	6554314	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6554315	6554468	1	-	1	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6554315	6554468	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6554469	6554561	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6554562	6554668	1	-	0	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6554562	6554668	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6554669	6554757	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6554758	6554961	1	-	0	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6554758	6554961	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6554962	6555115	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6555116	6555298	1	-	0	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6555116	6555298	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6555299	6555426	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6555427	6555576	1	-	0	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6555427	6555576	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6555577	6555672	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6555673	6556055	1	-	2	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6555673	6556055	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6556056	6556240	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6556241	6556396	1	-	2	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6556241	6556396	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6556397	6556555	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6556556	6556712	0.99	-	0	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6556556	6556712	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6556713	6556814	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6556815	6556963	1	-	2	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6556815	6556963	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6556964	6557099	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6557100	6557333	1	-	2	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6557100	6557333	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6557334	6557432	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6557433	6557552	1	-	2	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6557433	6557552	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6557553	6557732	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6557733	6557828	0.98	-	2	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6557733	6557828	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6557829	6557948	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6557949	6558055	0.5	-	1	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6557949	6558055	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6558056	6558130	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6558131	6558243	1	-	0	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6558131	6558243	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6558244	6558421	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6558422	6558468	1	-	2	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6558422	6558468	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6558469	6558621	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6558622	6558697	1	-	0	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6558622	6558697	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	intron	6558698	6558788	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	CDS	6558789	6559196	0.94	-	0	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	exon	6558789	6559196	.	-	.	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
Ledus.S4	AUGUSTUS	start_codon	6559194	6559196	.	-	0	transcript_id "Ledus.S4G090500.t1"; gene_id "Ledus.S4G090500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7519.t1 is derived from g12190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3556277	3558403	.	+	.	Ledus.S5G029700
Ledus.S5	AUGUSTUS	transcript	3556277	3558403	.	+	.	transcript_id "Ledus.S5G029700.t1"; gene_id "Ledus.S5G029700"
Ledus.S5	AUGUSTUS	start_codon	3556277	3556279	.	+	0	transcript_id "Ledus.S5G029700.t1"; gene_id "Ledus.S5G029700"
Ledus.S5	AUGUSTUS	CDS	3556277	3558403	1	+	0	transcript_id "Ledus.S5G029700.t1"; gene_id "Ledus.S5G029700"
Ledus.S5	AUGUSTUS	exon	3556277	3558403	.	+	.	transcript_id "Ledus.S5G029700.t1"; gene_id "Ledus.S5G029700"
Ledus.S5	AUGUSTUS	stop_codon	3558404	3558406	.	+	0	transcript_id "Ledus.S5G029700.t1"; gene_id "Ledus.S5G029700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5696.t1 is derived from g3135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25950629	25952323	.	-	.	Ledus.S1G311700
Ledus.S1	AUGUSTUS	transcript	25950629	25952323	.	-	.	transcript_id "Ledus.S1G311700.t1"; gene_id "Ledus.S1G311700"
Ledus.S1	AUGUSTUS	stop_codon	25950626	25950628	.	-	0	transcript_id "Ledus.S1G311700.t1"; gene_id "Ledus.S1G311700"
Ledus.S1	AUGUSTUS	CDS	25950629	25952323	1	-	0	transcript_id "Ledus.S1G311700.t1"; gene_id "Ledus.S1G311700"
Ledus.S1	AUGUSTUS	exon	25950629	25952323	.	-	.	transcript_id "Ledus.S1G311700.t1"; gene_id "Ledus.S1G311700"
Ledus.S1	AUGUSTUS	start_codon	25952321	25952323	.	-	0	transcript_id "Ledus.S1G311700.t1"; gene_id "Ledus.S1G311700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg37.t1 is derived from g9549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C12	AUGUSTUS	gene	183135	184824	.	+	.	Ledus.C12G000800
Ledus.C12	AUGUSTUS	transcript	183135	184824	.	+	.	transcript_id "Ledus.C12G000800.t1"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	start_codon	183135	183137	.	+	0	transcript_id "Ledus.C12G000800.t1"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	CDS	183135	183396	0.86	+	0	transcript_id "Ledus.C12G000800.t1"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	exon	183135	183396	.	+	.	transcript_id "Ledus.C12G000800.t1"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	intron	183397	183488	.	+	.	transcript_id "Ledus.C12G000800.t1"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	CDS	183489	184069	1	+	2	transcript_id "Ledus.C12G000800.t1"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	exon	183489	184069	.	+	.	transcript_id "Ledus.C12G000800.t1"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	intron	184070	184506	.	+	.	transcript_id "Ledus.C12G000800.t1"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	CDS	184507	184824	1	+	0	transcript_id "Ledus.C12G000800.t1"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	exon	184507	184824	.	+	.	transcript_id "Ledus.C12G000800.t1"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	stop_codon	184825	184827	.	+	0	transcript_id "Ledus.C12G000800.t1"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	transcript	183135	184592	.	+	.	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	start_codon	183135	183137	.	+	0	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	CDS	183135	183396	0.8	+	0	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	exon	183135	183396	.	+	.	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	intron	183397	183488	.	+	.	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	CDS	183489	184069	0.77	+	2	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	exon	183489	184069	.	+	.	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	intron	184070	184266	.	+	.	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	CDS	184267	184366	0.77	+	0	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	exon	184267	184366	.	+	.	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	intron	184367	184506	.	+	.	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	CDS	184507	184592	0.77	+	2	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	exon	184507	184592	.	+	.	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
Ledus.C12	AUGUSTUS	stop_codon	184593	184595	.	+	0	transcript_id "Ledus.C12G000800.t2"; gene_id "Ledus.C12G000800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8255.t1 is derived from g12926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10193272	10194463	.	+	.	Ledus.S5G103300
Ledus.S5	AUGUSTUS	transcript	10193272	10194463	.	+	.	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	start_codon	10193272	10193274	.	+	0	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	CDS	10193272	10193290	0.39	+	0	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	exon	10193272	10193290	.	+	.	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	intron	10193291	10193363	.	+	.	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	CDS	10193364	10193398	0.65	+	2	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	exon	10193364	10193398	.	+	.	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	intron	10193399	10193615	.	+	.	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	CDS	10193616	10193819	0.99	+	0	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	exon	10193616	10193819	.	+	.	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	intron	10193820	10194331	.	+	.	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	CDS	10194332	10194463	0.95	+	0	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	exon	10194332	10194463	.	+	.	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	stop_codon	10194464	10194466	.	+	0	transcript_id "Ledus.S5G103300.t1"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	transcript	10193272	10194463	.	+	.	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	start_codon	10193272	10193274	.	+	0	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	CDS	10193272	10193290	0.46	+	0	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	exon	10193272	10193290	.	+	.	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	intron	10193291	10193398	.	+	.	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	CDS	10193399	10193403	0.51	+	2	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	exon	10193399	10193403	.	+	.	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	intron	10193404	10193615	.	+	.	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	CDS	10193616	10193819	0.5	+	0	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	exon	10193616	10193819	.	+	.	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	intron	10193820	10194331	.	+	.	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	CDS	10194332	10194463	0.97	+	0	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	exon	10194332	10194463	.	+	.	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
Ledus.S5	AUGUSTUS	stop_codon	10194464	10194466	.	+	0	transcript_id "Ledus.S5G103300.t2"; gene_id "Ledus.S5G103300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg241.t1 is derived from g7102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1056358	1057353	.	-	.	Ledus.S2G012300
Ledus.S2	AUGUSTUS	transcript	1056358	1057353	.	-	.	transcript_id "Ledus.S2G012300.t1"; gene_id "Ledus.S2G012300"
Ledus.S2	AUGUSTUS	stop_codon	1056355	1056357	.	-	0	transcript_id "Ledus.S2G012300.t1"; gene_id "Ledus.S2G012300"
Ledus.S2	AUGUSTUS	CDS	1056358	1057353	0.91	-	0	transcript_id "Ledus.S2G012300.t1"; gene_id "Ledus.S2G012300"
Ledus.S2	AUGUSTUS	exon	1056358	1057353	.	-	.	transcript_id "Ledus.S2G012300.t1"; gene_id "Ledus.S2G012300"
Ledus.S2	AUGUSTUS	start_codon	1057351	1057353	.	-	0	transcript_id "Ledus.S2G012300.t1"; gene_id "Ledus.S2G012300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6993.t1 is derived from g6524.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	621068	623432	.	-	.	Ledus.C7G005400
Ledus.C7	AUGUSTUS	transcript	621068	623432	.	-	.	transcript_id "Ledus.C7G005400.t1"; gene_id "Ledus.C7G005400"
Ledus.C7	AUGUSTUS	stop_codon	620851	620853	.	-	0	transcript_id "Ledus.C7G005400.t1"; gene_id "Ledus.C7G005400"
Ledus.C7	AUGUSTUS	CDS	621068	621388	0.96	-	0	transcript_id "Ledus.C7G005400.t1"; gene_id "Ledus.C7G005400"
Ledus.C7	AUGUSTUS	exon	621068	621388	.	-	.	transcript_id "Ledus.C7G005400.t1"; gene_id "Ledus.C7G005400"
Ledus.C7	AUGUSTUS	intron	621389	622142	.	-	.	transcript_id "Ledus.C7G005400.t1"; gene_id "Ledus.C7G005400"
Ledus.C7	AUGUSTUS	CDS	622143	623432	0.88	-	0	transcript_id "Ledus.C7G005400.t1"; gene_id "Ledus.C7G005400"
Ledus.C7	AUGUSTUS	exon	622143	623432	.	-	.	transcript_id "Ledus.C7G005400.t1"; gene_id "Ledus.C7G005400"
Ledus.C7	AUGUSTUS	start_codon	623430	623432	.	-	0	transcript_id "Ledus.C7G005400.t1"; gene_id "Ledus.C7G005400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5986.t1 is derived from g3429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28164979	28166171	.	+	.	Ledus.S1G340700
Ledus.S1	AUGUSTUS	transcript	28164979	28166171	.	+	.	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	start_codon	28164979	28164981	.	+	0	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	CDS	28164979	28165078	0.41	+	0	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	exon	28164979	28165078	.	+	.	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	intron	28165079	28165197	.	+	.	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	CDS	28165198	28165319	1	+	2	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	exon	28165198	28165319	.	+	.	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	intron	28165320	28165468	.	+	.	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	CDS	28165469	28165542	1	+	0	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	exon	28165469	28165542	.	+	.	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	intron	28165543	28165634	.	+	.	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	CDS	28165635	28165675	1	+	1	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	exon	28165635	28165675	.	+	.	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	intron	28165676	28165776	.	+	.	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	CDS	28165777	28165948	0.99	+	2	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	exon	28165777	28165948	.	+	.	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	intron	28165949	28166041	.	+	.	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	CDS	28166042	28166171	0.87	+	1	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	exon	28166042	28166171	.	+	.	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
Ledus.S1	AUGUSTUS	stop_codon	28166172	28166174	.	+	0	transcript_id "Ledus.S1G340700.t1"; gene_id "Ledus.S1G340700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8410.t1 is derived from g13082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11511800	11512781	.	-	.	Ledus.S5G118800
Ledus.S5	AUGUSTUS	transcript	11511800	11512781	.	-	.	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	stop_codon	11511797	11511799	.	-	0	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	CDS	11511800	11511889	0.99	-	0	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	exon	11511800	11511889	.	-	.	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	intron	11511890	11511977	.	-	.	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	CDS	11511978	11512070	1	-	0	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	exon	11511978	11512070	.	-	.	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	intron	11512071	11512184	.	-	.	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	CDS	11512185	11512244	1	-	0	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	exon	11512185	11512244	.	-	.	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	intron	11512245	11512370	.	-	.	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	CDS	11512371	11512510	1	-	2	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	exon	11512371	11512510	.	-	.	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	intron	11512511	11512636	.	-	.	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	CDS	11512637	11512781	0.65	-	0	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	exon	11512637	11512781	.	-	.	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
Ledus.S5	AUGUSTUS	start_codon	11512779	11512781	.	-	0	transcript_id "Ledus.S5G118800.t1"; gene_id "Ledus.S5G118800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11939.t1 is derived from g5558.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7890167	7896123	.	+	.	Ledus.S4G109500
Ledus.S4	AUGUSTUS	transcript	7890167	7896123	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	start_codon	7890167	7890169	.	+	0	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7890167	7890224	0.86	+	0	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7890167	7890224	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7890225	7890449	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7890450	7890475	0.95	+	2	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7890450	7890475	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7890476	7890704	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7890705	7890828	0.87	+	0	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7890705	7890828	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7890829	7890914	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7890915	7890964	0.97	+	2	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7890915	7890964	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7890965	7891085	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7891086	7891173	0.93	+	0	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7891086	7891173	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7891174	7891300	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7891301	7891320	0.72	+	2	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7891301	7891320	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7891321	7891451	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7891452	7891541	0.68	+	0	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7891452	7891541	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7891542	7891864	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7891865	7892176	0.34	+	0	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7891865	7892176	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7892177	7892269	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7892270	7892486	1	+	0	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7892270	7892486	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7892487	7892622	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7892623	7892993	0.99	+	2	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7892623	7892993	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7892994	7893076	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7893077	7893203	0.73	+	0	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7893077	7893203	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7893204	7893322	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7893323	7894498	0.98	+	2	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7893323	7894498	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7894499	7894595	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7894596	7894940	0.99	+	2	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7894596	7894940	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7894941	7895036	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7895037	7895410	0.94	+	2	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7895037	7895410	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7895411	7895479	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7895480	7895860	0.96	+	0	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7895480	7895860	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7895861	7896063	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7896064	7896123	0.98	+	0	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7896064	7896123	.	+	.	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	stop_codon	7896124	7896126	.	+	0	transcript_id "Ledus.S4G109500.t1"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	transcript	7890167	7896123	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	start_codon	7890167	7890169	.	+	0	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7890167	7890224	0.81	+	0	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7890167	7890224	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7890225	7890449	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7890450	7890475	0.92	+	2	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7890450	7890475	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7890476	7890704	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7890705	7890828	0.85	+	0	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7890705	7890828	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7890829	7890914	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7890915	7890964	0.99	+	2	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7890915	7890964	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7890965	7891085	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7891086	7891173	0.99	+	0	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7891086	7891173	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7891174	7891300	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7891301	7891320	0.74	+	2	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7891301	7891320	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7891321	7891451	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7891452	7891541	0.64	+	0	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7891452	7891541	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7891542	7891864	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7891865	7892176	0.31	+	0	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7891865	7892176	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7892177	7892269	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7892270	7892486	1	+	0	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7892270	7892486	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7892487	7892622	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7892623	7892993	0.97	+	2	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7892623	7892993	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7892994	7893076	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7893077	7893203	0.83	+	0	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7893077	7893203	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7893204	7893322	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7893323	7894498	1	+	2	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7893323	7894498	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7894499	7894595	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7894596	7894940	0.99	+	2	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7894596	7894940	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7894941	7895036	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7895037	7895410	0.98	+	2	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7895037	7895410	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7895411	7895479	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7895480	7895860	0.99	+	0	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7895480	7895860	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7895861	7896054	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7896055	7896123	0.81	+	0	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7896055	7896123	.	+	.	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	stop_codon	7896124	7896126	.	+	0	transcript_id "Ledus.S4G109500.t2"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	transcript	7890167	7896123	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	start_codon	7890167	7890169	.	+	0	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7890167	7890224	0.83	+	0	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7890167	7890224	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7890225	7890449	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7890450	7890475	0.91	+	2	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7890450	7890475	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7890476	7890704	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7890705	7890828	0.85	+	0	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7890705	7890828	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7890829	7890914	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7890915	7890964	0.99	+	2	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7890915	7890964	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7890965	7891085	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7891086	7891173	0.97	+	0	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7891086	7891173	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7891174	7891300	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7891301	7891320	0.81	+	2	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7891301	7891320	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7891321	7891451	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7891452	7891541	0.71	+	0	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7891452	7891541	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7891542	7891864	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7891865	7892176	0.29	+	0	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7891865	7892176	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7892177	7892269	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7892270	7892486	1	+	0	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7892270	7892486	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7892487	7892622	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7892623	7892993	0.99	+	2	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7892623	7892993	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7892994	7893076	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7893077	7893203	0.74	+	0	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7893077	7893203	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7893204	7893322	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7893323	7894498	1	+	2	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7893323	7894498	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7894499	7894592	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7894593	7894940	1	+	2	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7894593	7894940	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7894941	7895036	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7895037	7895410	0.99	+	2	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7895037	7895410	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7895411	7895479	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7895480	7895860	0.97	+	0	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7895480	7895860	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	intron	7895861	7896054	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	CDS	7896055	7896123	0.75	+	0	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	exon	7896055	7896123	.	+	.	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
Ledus.S4	AUGUSTUS	stop_codon	7896124	7896126	.	+	0	transcript_id "Ledus.S4G109500.t3"; gene_id "Ledus.S4G109500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2602.t1 is derived from g35.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	361818	363617	.	+	.	Ledus.S1G002300
Ledus.S1	AUGUSTUS	transcript	362598	363617	.	+	.	transcript_id "Ledus.S1G002300.t1"; gene_id "Ledus.S1G002300"
Ledus.S1	AUGUSTUS	start_codon	362598	362600	.	+	0	transcript_id "Ledus.S1G002300.t1"; gene_id "Ledus.S1G002300"
Ledus.S1	AUGUSTUS	CDS	362598	363617	0.64	+	0	transcript_id "Ledus.S1G002300.t1"; gene_id "Ledus.S1G002300"
Ledus.S1	AUGUSTUS	exon	362598	363617	.	+	.	transcript_id "Ledus.S1G002300.t1"; gene_id "Ledus.S1G002300"
Ledus.S1	AUGUSTUS	stop_codon	363618	363620	.	+	0	transcript_id "Ledus.S1G002300.t1"; gene_id "Ledus.S1G002300"
Ledus.S1	AUGUSTUS	transcript	361818	363617	.	+	.	transcript_id "Ledus.S1G002300.t2"; gene_id "Ledus.S1G002300"
Ledus.S1	AUGUSTUS	start_codon	361818	361820	.	+	0	transcript_id "Ledus.S1G002300.t2"; gene_id "Ledus.S1G002300"
Ledus.S1	AUGUSTUS	CDS	361818	363617	0.53	+	0	transcript_id "Ledus.S1G002300.t2"; gene_id "Ledus.S1G002300"
Ledus.S1	AUGUSTUS	exon	361818	363617	.	+	.	transcript_id "Ledus.S1G002300.t2"; gene_id "Ledus.S1G002300"
Ledus.S1	AUGUSTUS	stop_codon	363618	363620	.	+	0	transcript_id "Ledus.S1G002300.t2"; gene_id "Ledus.S1G002300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5346.t1 is derived from g2785.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23489142	23489905	.	+	.	Ledus.S1G276700
Ledus.S1	AUGUSTUS	transcript	23489142	23489905	.	+	.	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	start_codon	23489142	23489144	.	+	0	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	CDS	23489142	23489306	0.87	+	0	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	exon	23489142	23489306	.	+	.	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	intron	23489307	23489387	.	+	.	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	CDS	23489388	23489508	1	+	0	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	exon	23489388	23489508	.	+	.	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	intron	23489509	23489597	.	+	.	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	CDS	23489598	23489689	1	+	2	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	exon	23489598	23489689	.	+	.	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	intron	23489690	23489764	.	+	.	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	CDS	23489765	23489905	1	+	0	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	exon	23489765	23489905	.	+	.	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	stop_codon	23489906	23489908	.	+	0	transcript_id "Ledus.S1G276700.t1"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	transcript	23489142	23489905	.	+	.	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	start_codon	23489142	23489144	.	+	0	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	CDS	23489142	23489306	0.76	+	0	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	exon	23489142	23489306	.	+	.	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	intron	23489307	23489384	.	+	.	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	CDS	23489385	23489508	0.98	+	0	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	exon	23489385	23489508	.	+	.	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	intron	23489509	23489597	.	+	.	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	CDS	23489598	23489689	1	+	2	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	exon	23489598	23489689	.	+	.	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	intron	23489690	23489764	.	+	.	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	CDS	23489765	23489905	1	+	0	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	exon	23489765	23489905	.	+	.	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
Ledus.S1	AUGUSTUS	stop_codon	23489906	23489908	.	+	0	transcript_id "Ledus.S1G276700.t2"; gene_id "Ledus.S1G276700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg236.t1 is derived from g7097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1047581	1049153	.	+	.	Ledus.S2G011800
Ledus.S2	AUGUSTUS	transcript	1047581	1049153	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	start_codon	1047581	1047583	.	+	0	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	CDS	1047581	1047759	0.66	+	0	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	exon	1047581	1047759	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	intron	1047760	1047854	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	CDS	1047855	1047909	0.99	+	1	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	exon	1047855	1047909	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	intron	1047910	1048014	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	CDS	1048015	1048050	1	+	0	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	exon	1048015	1048050	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	intron	1048051	1048190	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	CDS	1048191	1048235	0.99	+	0	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	exon	1048191	1048235	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	intron	1048236	1048338	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	CDS	1048339	1048422	1	+	0	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	exon	1048339	1048422	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	intron	1048423	1048505	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	CDS	1048506	1048568	1	+	0	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	exon	1048506	1048568	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	intron	1048569	1048648	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	CDS	1048649	1048687	1	+	0	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	exon	1048649	1048687	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	intron	1048688	1048803	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	CDS	1048804	1048903	0.99	+	0	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	exon	1048804	1048903	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	intron	1048904	1048995	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	CDS	1048996	1049153	0.98	+	2	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	exon	1048996	1049153	.	+	.	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
Ledus.S2	AUGUSTUS	stop_codon	1049154	1049156	.	+	0	transcript_id "Ledus.S2G011800.t1"; gene_id "Ledus.S2G011800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7976.t1 is derived from g12647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8299514	8300694	.	-	.	Ledus.S5G075400
Ledus.S5	AUGUSTUS	transcript	8299514	8300694	.	-	.	transcript_id "Ledus.S5G075400.t1"; gene_id "Ledus.S5G075400"
Ledus.S5	AUGUSTUS	stop_codon	8299511	8299513	.	-	0	transcript_id "Ledus.S5G075400.t1"; gene_id "Ledus.S5G075400"
Ledus.S5	AUGUSTUS	CDS	8299514	8299729	0.86	-	0	transcript_id "Ledus.S5G075400.t1"; gene_id "Ledus.S5G075400"
Ledus.S5	AUGUSTUS	exon	8299514	8299729	.	-	.	transcript_id "Ledus.S5G075400.t1"; gene_id "Ledus.S5G075400"
Ledus.S5	AUGUSTUS	intron	8299730	8299825	.	-	.	transcript_id "Ledus.S5G075400.t1"; gene_id "Ledus.S5G075400"
Ledus.S5	AUGUSTUS	CDS	8299826	8300353	1	-	0	transcript_id "Ledus.S5G075400.t1"; gene_id "Ledus.S5G075400"
Ledus.S5	AUGUSTUS	exon	8299826	8300353	.	-	.	transcript_id "Ledus.S5G075400.t1"; gene_id "Ledus.S5G075400"
Ledus.S5	AUGUSTUS	intron	8300354	8300463	.	-	.	transcript_id "Ledus.S5G075400.t1"; gene_id "Ledus.S5G075400"
Ledus.S5	AUGUSTUS	CDS	8300464	8300694	0.65	-	0	transcript_id "Ledus.S5G075400.t1"; gene_id "Ledus.S5G075400"
Ledus.S5	AUGUSTUS	exon	8300464	8300694	.	-	.	transcript_id "Ledus.S5G075400.t1"; gene_id "Ledus.S5G075400"
Ledus.S5	AUGUSTUS	start_codon	8300692	8300694	.	-	0	transcript_id "Ledus.S5G075400.t1"; gene_id "Ledus.S5G075400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6741.t1 is derived from g4184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33693755	33694105	.	+	.	Ledus.S1G416200
Ledus.S1	AUGUSTUS	transcript	33693755	33694105	.	+	.	transcript_id "Ledus.S1G416200.t1"; gene_id "Ledus.S1G416200"
Ledus.S1	AUGUSTUS	start_codon	33693755	33693757	.	+	0	transcript_id "Ledus.S1G416200.t1"; gene_id "Ledus.S1G416200"
Ledus.S1	AUGUSTUS	CDS	33693755	33694105	0.68	+	0	transcript_id "Ledus.S1G416200.t1"; gene_id "Ledus.S1G416200"
Ledus.S1	AUGUSTUS	exon	33693755	33694105	.	+	.	transcript_id "Ledus.S1G416200.t1"; gene_id "Ledus.S1G416200"
Ledus.S1	AUGUSTUS	stop_codon	33694106	33694108	.	+	0	transcript_id "Ledus.S1G416200.t1"; gene_id "Ledus.S1G416200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5721.t1 is derived from g3160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26225427	26226294	.	+	.	Ledus.S1G314200
Ledus.S1	AUGUSTUS	transcript	26225951	26226294	.	+	.	transcript_id "Ledus.S1G314200.t1"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	start_codon	26225951	26225953	.	+	0	transcript_id "Ledus.S1G314200.t1"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	CDS	26225951	26226101	0.6	+	0	transcript_id "Ledus.S1G314200.t1"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	exon	26225951	26226101	.	+	.	transcript_id "Ledus.S1G314200.t1"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	intron	26226102	26226199	.	+	.	transcript_id "Ledus.S1G314200.t1"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	CDS	26226200	26226294	0.89	+	2	transcript_id "Ledus.S1G314200.t1"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	exon	26226200	26226294	.	+	.	transcript_id "Ledus.S1G314200.t1"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	stop_codon	26226295	26226297	.	+	0	transcript_id "Ledus.S1G314200.t1"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	transcript	26225427	26226294	.	+	.	transcript_id "Ledus.S1G314200.t2"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	start_codon	26225427	26225429	.	+	0	transcript_id "Ledus.S1G314200.t2"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	CDS	26225427	26225791	0.49	+	0	transcript_id "Ledus.S1G314200.t2"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	exon	26225427	26225791	.	+	.	transcript_id "Ledus.S1G314200.t2"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	intron	26225792	26225862	.	+	.	transcript_id "Ledus.S1G314200.t2"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	CDS	26225863	26226101	0.53	+	1	transcript_id "Ledus.S1G314200.t2"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	exon	26225863	26226101	.	+	.	transcript_id "Ledus.S1G314200.t2"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	intron	26226102	26226199	.	+	.	transcript_id "Ledus.S1G314200.t2"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	CDS	26226200	26226294	0.88	+	2	transcript_id "Ledus.S1G314200.t2"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	exon	26226200	26226294	.	+	.	transcript_id "Ledus.S1G314200.t2"; gene_id "Ledus.S1G314200"
Ledus.S1	AUGUSTUS	stop_codon	26226295	26226297	.	+	0	transcript_id "Ledus.S1G314200.t2"; gene_id "Ledus.S1G314200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10738.t1 is derived from g11769.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17416740	17420223	.	-	.	Ledus.S3G221500
Ledus.S3	AUGUSTUS	transcript	17416740	17418659	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	stop_codon	17416737	17416739	.	-	0	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17416740	17416837	0.97	-	2	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17416740	17416837	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17416838	17416914	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17416915	17417023	1	-	0	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17416915	17417023	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17417024	17417104	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17417105	17417224	1	-	0	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17417105	17417224	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17417225	17417342	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17417343	17417397	1	-	1	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17417343	17417397	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17417398	17417498	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17417499	17417568	1	-	2	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17417499	17417568	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17417569	17417663	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17417664	17417763	1	-	0	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17417664	17417763	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17417764	17417848	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17417849	17418017	1	-	1	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17417849	17418017	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17418018	17418104	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17418105	17418203	1	-	1	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17418105	17418203	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17418204	17418282	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17418283	17418474	1	-	1	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17418283	17418474	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17418475	17418540	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17418541	17418659	1	-	0	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17418541	17418659	.	-	.	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	start_codon	17418657	17418659	.	-	0	transcript_id "Ledus.S3G221500.t1"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	transcript	17416740	17420223	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	stop_codon	17416737	17416739	.	-	0	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17416740	17416837	0.97	-	2	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17416740	17416837	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17416838	17416914	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17416915	17417023	1	-	0	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17416915	17417023	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17417024	17417104	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17417105	17417224	1	-	0	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17417105	17417224	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17417225	17417342	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17417343	17417397	1	-	1	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17417343	17417397	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17417398	17417498	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17417499	17417568	1	-	2	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17417499	17417568	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17417569	17417663	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17417664	17417763	1	-	0	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17417664	17417763	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17417764	17417848	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17417849	17418017	1	-	1	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17417849	17418017	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17418018	17418104	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17418105	17418203	1	-	1	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17418105	17418203	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17418204	17418282	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17418283	17418474	0.82	-	1	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17418283	17418474	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	intron	17418475	17418973	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	CDS	17418974	17420223	0.81	-	0	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	exon	17418974	17420223	.	-	.	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
Ledus.S3	AUGUSTUS	start_codon	17420221	17420223	.	-	0	transcript_id "Ledus.S3G221500.t2"; gene_id "Ledus.S3G221500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7840.t1 is derived from g12511.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7402939	7407335	.	+	.	Ledus.S5G061800
Ledus.S5	AUGUSTUS	transcript	7402939	7407335	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	start_codon	7402939	7402941	.	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7402939	7403280	0.97	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7402939	7403280	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7403281	7403362	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7403363	7403581	1	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7403363	7403581	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7403582	7403658	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7403659	7403804	1	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7403659	7403804	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7403805	7403908	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7403909	7404233	1	+	1	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7403909	7404233	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7404234	7404321	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7404322	7404469	1	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7404322	7404469	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7404470	7404610	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7404611	7404690	1	+	2	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7404611	7404690	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7404691	7404835	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7404836	7404901	0.95	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7404836	7404901	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7404902	7404981	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7404982	7405038	0.95	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7404982	7405038	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7405039	7405190	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7405191	7405521	0.83	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7405191	7405521	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7405522	7405628	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7405629	7405642	0.83	+	2	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7405629	7405642	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7405643	7405721	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7405722	7405781	0.98	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7405722	7405781	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7405782	7405862	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7405863	7406108	0.98	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7405863	7406108	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7406109	7406232	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7406233	7406369	0.94	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7406233	7406369	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7406370	7406452	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7406453	7406592	1	+	1	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7406453	7406592	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7406593	7406674	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7406675	7406767	1	+	2	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7406675	7406767	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7406768	7406839	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7406840	7406858	0.97	+	2	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7406840	7406858	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7406859	7406950	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7406951	7407008	0.97	+	1	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7406951	7407008	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7407009	7407317	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7407318	7407335	1	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7407318	7407335	.	+	.	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	stop_codon	7407336	7407338	.	+	0	transcript_id "Ledus.S5G061800.t1"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	transcript	7405019	7407335	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	start_codon	7405019	7405021	.	+	0	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7405019	7405038	0.38	+	0	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7405019	7405038	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7405039	7405231	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7405232	7405521	0.55	+	1	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7405232	7405521	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7405522	7405628	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7405629	7405642	0.77	+	2	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7405629	7405642	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7405643	7405721	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7405722	7405781	0.97	+	0	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7405722	7405781	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7405782	7405862	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7405863	7406108	0.97	+	0	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7405863	7406108	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7406109	7406232	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7406233	7406369	0.96	+	0	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7406233	7406369	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7406370	7406452	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7406453	7406592	1	+	1	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7406453	7406592	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7406593	7406674	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7406675	7406767	1	+	2	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7406675	7406767	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7406768	7406839	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7406840	7406858	0.96	+	2	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7406840	7406858	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7406859	7406950	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7406951	7407008	0.96	+	1	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7406951	7407008	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	intron	7407009	7407317	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	CDS	7407318	7407335	0.99	+	0	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	exon	7407318	7407335	.	+	.	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
Ledus.S5	AUGUSTUS	stop_codon	7407336	7407338	.	+	0	transcript_id "Ledus.S5G061800.t2"; gene_id "Ledus.S5G061800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7580.t1 is derived from g12251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4176197	4179034	.	+	.	Ledus.S5G035800
Ledus.S5	AUGUSTUS	transcript	4176197	4179034	.	+	.	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	start_codon	4176197	4176199	.	+	0	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	CDS	4176197	4177849	0.69	+	0	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	exon	4176197	4177849	.	+	.	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	intron	4177850	4177940	.	+	.	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	CDS	4177941	4178323	0.99	+	0	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	exon	4177941	4178323	.	+	.	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	intron	4178324	4178405	.	+	.	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	CDS	4178406	4178466	1	+	1	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	exon	4178406	4178466	.	+	.	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	intron	4178467	4178560	.	+	.	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	CDS	4178561	4179034	0.93	+	0	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	exon	4178561	4179034	.	+	.	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	stop_codon	4179035	4179037	.	+	0	transcript_id "Ledus.S5G035800.t1"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	transcript	4176197	4176701	.	+	.	transcript_id "Ledus.S5G035800.t2"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	start_codon	4176197	4176199	.	+	0	transcript_id "Ledus.S5G035800.t2"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	CDS	4176197	4176613	0.7	+	0	transcript_id "Ledus.S5G035800.t2"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	exon	4176197	4176613	.	+	.	transcript_id "Ledus.S5G035800.t2"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	intron	4176614	4176695	.	+	.	transcript_id "Ledus.S5G035800.t2"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	CDS	4176696	4176701	0.55	+	0	transcript_id "Ledus.S5G035800.t2"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	exon	4176696	4176701	.	+	.	transcript_id "Ledus.S5G035800.t2"; gene_id "Ledus.S5G035800"
Ledus.S5	AUGUSTUS	stop_codon	4176702	4176704	.	+	0	transcript_id "Ledus.S5G035800.t2"; gene_id "Ledus.S5G035800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3568.t1 is derived from g1004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9637235	9640165	.	+	.	Ledus.S1G098900
Ledus.S1	AUGUSTUS	transcript	9637235	9640165	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	start_codon	9637235	9637237	.	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9637235	9637522	0.81	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9637235	9637522	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9637523	9637628	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9637629	9637685	1	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9637629	9637685	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9637686	9637789	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9637790	9637870	1	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9637790	9637870	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9637871	9637989	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9637990	9638047	1	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9637990	9638047	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9638048	9638130	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9638131	9638237	1	+	2	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9638131	9638237	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9638238	9638339	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9638340	9638391	1	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9638340	9638391	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9638392	9638503	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9638504	9638553	1	+	2	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9638504	9638553	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9638554	9638686	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9638687	9638752	1	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9638687	9638752	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9638753	9638837	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9638838	9639002	1	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9638838	9639002	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9639003	9639152	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9639153	9639225	1	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9639153	9639225	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9639226	9639366	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9639367	9639499	1	+	2	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9639367	9639499	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9639500	9639635	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9639636	9639693	1	+	1	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9639636	9639693	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9639694	9639773	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9639774	9639821	1	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9639774	9639821	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9639822	9639906	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9639907	9639990	1	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9639907	9639990	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	intron	9639991	9640093	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	CDS	9640094	9640165	1	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	exon	9640094	9640165	.	+	.	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
Ledus.S1	AUGUSTUS	stop_codon	9640166	9640168	.	+	0	transcript_id "Ledus.S1G098900.t1"; gene_id "Ledus.S1G098900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6420.t1 is derived from g3863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31160275	31161070	.	+	.	Ledus.S1G384100
Ledus.S1	AUGUSTUS	transcript	31160275	31161070	.	+	.	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	start_codon	31160275	31160277	.	+	0	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	CDS	31160275	31160363	0.98	+	0	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	exon	31160275	31160363	.	+	.	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	intron	31160364	31160442	.	+	.	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	CDS	31160443	31160583	1	+	1	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	exon	31160443	31160583	.	+	.	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	intron	31160584	31160709	.	+	.	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	CDS	31160710	31160726	0.98	+	1	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	exon	31160710	31160726	.	+	.	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	intron	31160727	31160993	.	+	.	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	CDS	31160994	31161070	0.98	+	2	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	exon	31160994	31161070	.	+	.	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
Ledus.S1	AUGUSTUS	stop_codon	31161071	31161073	.	+	0	transcript_id "Ledus.S1G384100.t1"; gene_id "Ledus.S1G384100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9411.t1 is derived from g10441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6597559	6598617	.	-	.	Ledus.S3G088800
Ledus.S3	AUGUSTUS	transcript	6597559	6598617	.	-	.	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	stop_codon	6597556	6597558	.	-	0	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	CDS	6597559	6597736	0.99	-	1	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	exon	6597559	6597736	.	-	.	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	intron	6597737	6597834	.	-	.	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	CDS	6597835	6597908	1	-	0	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	exon	6597835	6597908	.	-	.	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	intron	6597909	6597995	.	-	.	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	CDS	6597996	6598162	1	-	2	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	exon	6597996	6598162	.	-	.	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	intron	6598163	6598281	.	-	.	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	CDS	6598282	6598351	1	-	0	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	exon	6598282	6598351	.	-	.	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	intron	6598352	6598479	.	-	.	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	CDS	6598480	6598617	1	-	0	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	exon	6598480	6598617	.	-	.	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
Ledus.S3	AUGUSTUS	start_codon	6598615	6598617	.	-	0	transcript_id "Ledus.S3G088800.t1"; gene_id "Ledus.S3G088800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4095.t1 is derived from g1531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14669922	14670744	.	-	.	Ledus.S1G151600
Ledus.S1	AUGUSTUS	transcript	14669922	14670744	.	-	.	transcript_id "Ledus.S1G151600.t1"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	stop_codon	14669919	14669921	.	-	0	transcript_id "Ledus.S1G151600.t1"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	CDS	14669922	14670134	0.92	-	0	transcript_id "Ledus.S1G151600.t1"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	exon	14669922	14670134	.	-	.	transcript_id "Ledus.S1G151600.t1"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	intron	14670135	14670392	.	-	.	transcript_id "Ledus.S1G151600.t1"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	CDS	14670393	14670548	1	-	0	transcript_id "Ledus.S1G151600.t1"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	exon	14670393	14670548	.	-	.	transcript_id "Ledus.S1G151600.t1"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	intron	14670549	14670624	.	-	.	transcript_id "Ledus.S1G151600.t1"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	CDS	14670625	14670744	0.57	-	0	transcript_id "Ledus.S1G151600.t1"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	exon	14670625	14670744	.	-	.	transcript_id "Ledus.S1G151600.t1"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	start_codon	14670742	14670744	.	-	0	transcript_id "Ledus.S1G151600.t1"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	transcript	14670125	14670744	.	-	.	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	stop_codon	14670122	14670124	.	-	0	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	CDS	14670125	14670134	0.75	-	1	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	exon	14670125	14670134	.	-	.	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	intron	14670135	14670288	.	-	.	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	CDS	14670289	14670320	0.68	-	0	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	exon	14670289	14670320	.	-	.	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	intron	14670321	14670392	.	-	.	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	CDS	14670393	14670548	0.78	-	0	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	exon	14670393	14670548	.	-	.	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	intron	14670549	14670624	.	-	.	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	CDS	14670625	14670744	0.53	-	0	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	exon	14670625	14670744	.	-	.	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
Ledus.S1	AUGUSTUS	start_codon	14670742	14670744	.	-	0	transcript_id "Ledus.S1G151600.t2"; gene_id "Ledus.S1G151600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10605.t1 is derived from g11635.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16327370	16327600	.	+	.	Ledus.S3G208200
Ledus.S3	AUGUSTUS	transcript	16327370	16327600	.	+	.	transcript_id "Ledus.S3G208200.t1"; gene_id "Ledus.S3G208200"
Ledus.S3	AUGUSTUS	start_codon	16327370	16327372	.	+	0	transcript_id "Ledus.S3G208200.t1"; gene_id "Ledus.S3G208200"
Ledus.S3	AUGUSTUS	CDS	16327370	16327600	0.95	+	0	transcript_id "Ledus.S3G208200.t1"; gene_id "Ledus.S3G208200"
Ledus.S3	AUGUSTUS	exon	16327370	16327600	.	+	.	transcript_id "Ledus.S3G208200.t1"; gene_id "Ledus.S3G208200"
Ledus.S3	AUGUSTUS	stop_codon	16327601	16327603	.	+	0	transcript_id "Ledus.S3G208200.t1"; gene_id "Ledus.S3G208200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9775.t1 is derived from g10805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9751111	9751657	.	+	.	Ledus.S3G125200
Ledus.S3	AUGUSTUS	transcript	9751111	9751657	.	+	.	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	start_codon	9751111	9751113	.	+	0	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	CDS	9751111	9751221	0.32	+	0	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	exon	9751111	9751221	.	+	.	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	intron	9751222	9751304	.	+	.	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	CDS	9751305	9751328	0.99	+	0	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	exon	9751305	9751328	.	+	.	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	intron	9751329	9751474	.	+	.	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	CDS	9751475	9751489	0.94	+	0	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	exon	9751475	9751489	.	+	.	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	intron	9751490	9751564	.	+	.	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	CDS	9751565	9751657	0.98	+	0	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	exon	9751565	9751657	.	+	.	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
Ledus.S3	AUGUSTUS	stop_codon	9751658	9751660	.	+	0	transcript_id "Ledus.S3G125200.t1"; gene_id "Ledus.S3G125200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5771.t1 is derived from g3212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26681157	26682578	.	+	.	Ledus.S1G319200
Ledus.S1	AUGUSTUS	transcript	26681157	26682578	.	+	.	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	start_codon	26681157	26681159	.	+	0	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	CDS	26681157	26681372	0.95	+	0	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	exon	26681157	26681372	.	+	.	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	intron	26681373	26681599	.	+	.	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	CDS	26681600	26681749	1	+	0	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	exon	26681600	26681749	.	+	.	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	intron	26681750	26681843	.	+	.	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	CDS	26681844	26681933	0.99	+	0	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	exon	26681844	26681933	.	+	.	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	intron	26681934	26682093	.	+	.	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	CDS	26682094	26682221	0.94	+	0	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	exon	26682094	26682221	.	+	.	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	intron	26682222	26682445	.	+	.	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	CDS	26682446	26682578	0.62	+	1	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	exon	26682446	26682578	.	+	.	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
Ledus.S1	AUGUSTUS	stop_codon	26682579	26682581	.	+	0	transcript_id "Ledus.S1G319200.t1"; gene_id "Ledus.S1G319200"
# This transcript jg2941.t2 is derived from g376.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2942.t1 is derived from g377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4758082	4759101	.	+	.	Ledus.S1G036300
Ledus.S1	AUGUSTUS	transcript	4758082	4759101	.	+	.	transcript_id "Ledus.S1G036300.t1"; gene_id "Ledus.S1G036300"
Ledus.S1	AUGUSTUS	start_codon	4758082	4758084	.	+	0	transcript_id "Ledus.S1G036300.t1"; gene_id "Ledus.S1G036300"
Ledus.S1	AUGUSTUS	CDS	4758082	4758129	0.7	+	0	transcript_id "Ledus.S1G036300.t1"; gene_id "Ledus.S1G036300"
Ledus.S1	AUGUSTUS	exon	4758082	4758129	.	+	.	transcript_id "Ledus.S1G036300.t1"; gene_id "Ledus.S1G036300"
Ledus.S1	AUGUSTUS	intron	4758130	4758258	.	+	.	transcript_id "Ledus.S1G036300.t1"; gene_id "Ledus.S1G036300"
Ledus.S1	AUGUSTUS	CDS	4758259	4759101	0.59	+	0	transcript_id "Ledus.S1G036300.t1"; gene_id "Ledus.S1G036300"
Ledus.S1	AUGUSTUS	exon	4758259	4759101	.	+	.	transcript_id "Ledus.S1G036300.t1"; gene_id "Ledus.S1G036300"
Ledus.S1	AUGUSTUS	stop_codon	4759102	4759104	.	+	0	transcript_id "Ledus.S1G036300.t1"; gene_id "Ledus.S1G036300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3995.t1 is derived from g1431.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13951625	13951975	.	+	.	Ledus.S1G141600
Ledus.S1	AUGUSTUS	transcript	13951625	13951975	.	+	.	transcript_id "Ledus.S1G141600.t1"; gene_id "Ledus.S1G141600"
Ledus.S1	AUGUSTUS	start_codon	13951625	13951627	.	+	0	transcript_id "Ledus.S1G141600.t1"; gene_id "Ledus.S1G141600"
Ledus.S1	AUGUSTUS	CDS	13951625	13951975	0.83	+	0	transcript_id "Ledus.S1G141600.t1"; gene_id "Ledus.S1G141600"
Ledus.S1	AUGUSTUS	exon	13951625	13951975	.	+	.	transcript_id "Ledus.S1G141600.t1"; gene_id "Ledus.S1G141600"
Ledus.S1	AUGUSTUS	stop_codon	13951976	13951978	.	+	0	transcript_id "Ledus.S1G141600.t1"; gene_id "Ledus.S1G141600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2559.t1 is derived from g9422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18965204	18967060	.	+	.	Ledus.S2G244100
Ledus.S2	AUGUSTUS	transcript	18965204	18967060	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	start_codon	18965204	18965206	.	+	0	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	CDS	18965204	18965284	0.9	+	0	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	exon	18965204	18965284	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	intron	18965285	18965363	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	CDS	18965364	18965438	1	+	0	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	exon	18965364	18965438	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	intron	18965439	18965534	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	CDS	18965535	18965607	1	+	0	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	exon	18965535	18965607	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	intron	18965608	18965717	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	CDS	18965718	18965762	0.98	+	2	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	exon	18965718	18965762	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	intron	18965763	18965865	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	CDS	18965866	18965977	0.92	+	2	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	exon	18965866	18965977	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	intron	18965978	18966089	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	CDS	18966090	18966156	0.92	+	1	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	exon	18966090	18966156	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	intron	18966157	18966294	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	CDS	18966295	18966339	1	+	0	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	exon	18966295	18966339	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	intron	18966340	18966433	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	CDS	18966434	18966489	1	+	0	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	exon	18966434	18966489	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	intron	18966490	18966630	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	CDS	18966631	18966806	1	+	1	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	exon	18966631	18966806	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	intron	18966807	18966893	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	CDS	18966894	18967060	1	+	2	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	exon	18966894	18967060	.	+	.	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
Ledus.S2	AUGUSTUS	stop_codon	18967061	18967063	.	+	0	transcript_id "Ledus.S2G244100.t1"; gene_id "Ledus.S2G244100"
# This transcript jg6154.t2 is derived from g3597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6155.t1 is derived from g3598.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29307420	29308573	.	+	.	Ledus.S1G357600
Ledus.S1	AUGUSTUS	transcript	29307420	29308573	.	+	.	transcript_id "Ledus.S1G357600.t1"; gene_id "Ledus.S1G357600"
Ledus.S1	AUGUSTUS	start_codon	29307420	29307422	.	+	0	transcript_id "Ledus.S1G357600.t1"; gene_id "Ledus.S1G357600"
Ledus.S1	AUGUSTUS	CDS	29307420	29307542	0.82	+	0	transcript_id "Ledus.S1G357600.t1"; gene_id "Ledus.S1G357600"
Ledus.S1	AUGUSTUS	exon	29307420	29307542	.	+	.	transcript_id "Ledus.S1G357600.t1"; gene_id "Ledus.S1G357600"
Ledus.S1	AUGUSTUS	intron	29307543	29307757	.	+	.	transcript_id "Ledus.S1G357600.t1"; gene_id "Ledus.S1G357600"
Ledus.S1	AUGUSTUS	CDS	29307758	29308573	0.82	+	0	transcript_id "Ledus.S1G357600.t1"; gene_id "Ledus.S1G357600"
Ledus.S1	AUGUSTUS	exon	29307758	29308573	.	+	.	transcript_id "Ledus.S1G357600.t1"; gene_id "Ledus.S1G357600"
Ledus.S1	AUGUSTUS	stop_codon	29308574	29308576	.	+	0	transcript_id "Ledus.S1G357600.t1"; gene_id "Ledus.S1G357600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11426.t1 is derived from g5044.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4212930	4213968	.	+	.	Ledus.S4G058200
Ledus.S4	AUGUSTUS	transcript	4212930	4213968	.	+	.	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	start_codon	4212930	4212932	.	+	0	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	CDS	4212930	4213187	0.42	+	0	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	exon	4212930	4213187	.	+	.	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	intron	4213188	4213289	.	+	.	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	CDS	4213290	4213436	0.94	+	0	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	exon	4213290	4213436	.	+	.	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	intron	4213437	4213506	.	+	.	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	CDS	4213507	4213614	1	+	0	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	exon	4213507	4213614	.	+	.	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	intron	4213615	4213695	.	+	.	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	CDS	4213696	4213968	0.99	+	0	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	exon	4213696	4213968	.	+	.	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
Ledus.S4	AUGUSTUS	stop_codon	4213969	4213971	.	+	0	transcript_id "Ledus.S4G058200.t1"; gene_id "Ledus.S4G058200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1100.t1 is derived from g7961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7521610	7522041	.	-	.	Ledus.S2G098200
Ledus.S2	AUGUSTUS	transcript	7521610	7522041	.	-	.	transcript_id "Ledus.S2G098200.t1"; gene_id "Ledus.S2G098200"
Ledus.S2	AUGUSTUS	stop_codon	7521607	7521609	.	-	0	transcript_id "Ledus.S2G098200.t1"; gene_id "Ledus.S2G098200"
Ledus.S2	AUGUSTUS	CDS	7521610	7522041	0.86	-	0	transcript_id "Ledus.S2G098200.t1"; gene_id "Ledus.S2G098200"
Ledus.S2	AUGUSTUS	exon	7521610	7522041	.	-	.	transcript_id "Ledus.S2G098200.t1"; gene_id "Ledus.S2G098200"
Ledus.S2	AUGUSTUS	start_codon	7522039	7522041	.	-	0	transcript_id "Ledus.S2G098200.t1"; gene_id "Ledus.S2G098200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7761.t1 is derived from g12432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6116377	6120060	.	+	.	Ledus.S5G053900
Ledus.S5	AUGUSTUS	transcript	6116377	6120060	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	start_codon	6116377	6116379	.	+	0	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6116377	6116405	1	+	0	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6116377	6116405	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6116406	6116492	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6116493	6116579	1	+	1	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6116493	6116579	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6116580	6116923	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6116924	6116987	1	+	1	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6116924	6116987	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6116988	6117180	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6117181	6117240	0.99	+	0	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6117181	6117240	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6117241	6117347	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6117348	6117431	0.99	+	0	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6117348	6117431	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6117432	6117496	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6117497	6117554	1	+	0	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6117497	6117554	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6117555	6117675	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6117676	6117800	1	+	2	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6117676	6117800	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6117801	6117927	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6117928	6117972	1	+	0	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6117928	6117972	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6117973	6118157	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6118158	6118206	1	+	0	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6118158	6118206	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6118207	6118301	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6118302	6118411	1	+	2	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6118302	6118411	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6118412	6118530	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6118531	6118607	1	+	0	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6118531	6118607	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6118608	6118748	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6118749	6118799	1	+	1	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6118749	6118799	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6118800	6118911	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6118912	6118976	1	+	1	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6118912	6118976	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6118977	6119100	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6119101	6119255	1	+	2	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6119101	6119255	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6119256	6119479	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6119480	6119520	1	+	0	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6119480	6119520	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6119521	6119626	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6119627	6119681	1	+	1	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6119627	6119681	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6119682	6119767	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6119768	6119824	1	+	0	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6119768	6119824	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	intron	6119825	6119910	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	CDS	6119911	6120060	0.55	+	0	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	exon	6119911	6120060	.	+	.	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
Ledus.S5	AUGUSTUS	stop_codon	6120061	6120063	.	+	0	transcript_id "Ledus.S5G053900.t1"; gene_id "Ledus.S5G053900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5691.t1 is derived from g3130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25934561	25934824	.	-	.	Ledus.S1G311200
Ledus.S1	AUGUSTUS	transcript	25934561	25934824	.	-	.	transcript_id "Ledus.S1G311200.t1"; gene_id "Ledus.S1G311200"
Ledus.S1	AUGUSTUS	stop_codon	25934558	25934560	.	-	0	transcript_id "Ledus.S1G311200.t1"; gene_id "Ledus.S1G311200"
Ledus.S1	AUGUSTUS	CDS	25934561	25934824	0.81	-	0	transcript_id "Ledus.S1G311200.t1"; gene_id "Ledus.S1G311200"
Ledus.S1	AUGUSTUS	exon	25934561	25934824	.	-	.	transcript_id "Ledus.S1G311200.t1"; gene_id "Ledus.S1G311200"
Ledus.S1	AUGUSTUS	start_codon	25934822	25934824	.	-	0	transcript_id "Ledus.S1G311200.t1"; gene_id "Ledus.S1G311200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4890.t1 is derived from g2328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20557128	20557905	.	-	.	Ledus.S1G231100
Ledus.S1	AUGUSTUS	transcript	20557128	20557905	.	-	.	transcript_id "Ledus.S1G231100.t1"; gene_id "Ledus.S1G231100"
Ledus.S1	AUGUSTUS	stop_codon	20557125	20557127	.	-	0	transcript_id "Ledus.S1G231100.t1"; gene_id "Ledus.S1G231100"
Ledus.S1	AUGUSTUS	CDS	20557128	20557135	0.81	-	2	transcript_id "Ledus.S1G231100.t1"; gene_id "Ledus.S1G231100"
Ledus.S1	AUGUSTUS	exon	20557128	20557135	.	-	.	transcript_id "Ledus.S1G231100.t1"; gene_id "Ledus.S1G231100"
Ledus.S1	AUGUSTUS	intron	20557136	20557352	.	-	.	transcript_id "Ledus.S1G231100.t1"; gene_id "Ledus.S1G231100"
Ledus.S1	AUGUSTUS	CDS	20557353	20557409	0.68	-	2	transcript_id "Ledus.S1G231100.t1"; gene_id "Ledus.S1G231100"
Ledus.S1	AUGUSTUS	exon	20557353	20557409	.	-	.	transcript_id "Ledus.S1G231100.t1"; gene_id "Ledus.S1G231100"
Ledus.S1	AUGUSTUS	intron	20557410	20557511	.	-	.	transcript_id "Ledus.S1G231100.t1"; gene_id "Ledus.S1G231100"
Ledus.S1	AUGUSTUS	CDS	20557512	20557905	0.67	-	0	transcript_id "Ledus.S1G231100.t1"; gene_id "Ledus.S1G231100"
Ledus.S1	AUGUSTUS	exon	20557512	20557905	.	-	.	transcript_id "Ledus.S1G231100.t1"; gene_id "Ledus.S1G231100"
Ledus.S1	AUGUSTUS	start_codon	20557903	20557905	.	-	0	transcript_id "Ledus.S1G231100.t1"; gene_id "Ledus.S1G231100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8904.t1 is derived from g9934.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2970143	2971531	.	-	.	Ledus.S3G038100
Ledus.S3	AUGUSTUS	transcript	2970143	2971531	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	stop_codon	2970140	2970142	.	-	0	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	CDS	2970143	2970247	1	-	0	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	exon	2970143	2970247	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	intron	2970248	2970333	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	CDS	2970334	2970399	1	-	0	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	exon	2970334	2970399	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	intron	2970400	2970497	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	CDS	2970498	2970588	1	-	1	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	exon	2970498	2970588	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	intron	2970589	2970681	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	CDS	2970682	2970866	0.93	-	0	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	exon	2970682	2970866	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	intron	2970867	2970980	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	CDS	2970981	2971066	0.81	-	2	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	exon	2970981	2971066	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	intron	2971067	2971161	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	CDS	2971162	2971183	0.94	-	0	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	exon	2971162	2971183	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	intron	2971184	2971268	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	CDS	2971269	2971382	1	-	0	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	exon	2971269	2971382	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	intron	2971383	2971480	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	CDS	2971481	2971531	1	-	0	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	exon	2971481	2971531	.	-	.	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
Ledus.S3	AUGUSTUS	start_codon	2971529	2971531	.	-	0	transcript_id "Ledus.S3G038100.t1"; gene_id "Ledus.S3G038100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8980.t1 is derived from g10010.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3660920	3662681	.	+	.	Ledus.S3G045700
Ledus.S3	AUGUSTUS	transcript	3660920	3662681	.	+	.	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	start_codon	3660920	3660922	.	+	0	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	CDS	3660920	3661055	0.4	+	0	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	exon	3660920	3661055	.	+	.	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	intron	3661056	3661144	.	+	.	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	CDS	3661145	3661287	1	+	2	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	exon	3661145	3661287	.	+	.	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	intron	3661288	3661376	.	+	.	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	CDS	3661377	3661508	1	+	0	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	exon	3661377	3661508	.	+	.	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	intron	3661509	3661605	.	+	.	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	CDS	3661606	3661728	0.93	+	0	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	exon	3661606	3661728	.	+	.	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	intron	3661729	3661831	.	+	.	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	CDS	3661832	3662228	0.64	+	0	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	exon	3661832	3662228	.	+	.	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	intron	3662229	3662391	.	+	.	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	CDS	3662392	3662681	0.62	+	2	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	exon	3662392	3662681	.	+	.	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
Ledus.S3	AUGUSTUS	stop_codon	3662682	3662684	.	+	0	transcript_id "Ledus.S3G045700.t1"; gene_id "Ledus.S3G045700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4842.t1 is derived from g2280.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20090183	20091976	.	-	.	Ledus.S1G226300
Ledus.S1	AUGUSTUS	transcript	20090183	20091976	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	stop_codon	20090180	20090182	.	-	0	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	CDS	20090183	20090378	1	-	1	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	exon	20090183	20090378	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	intron	20090379	20090472	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	CDS	20090473	20090605	1	-	2	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	exon	20090473	20090605	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	intron	20090606	20090695	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	CDS	20090696	20090812	1	-	2	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	exon	20090696	20090812	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	intron	20090813	20090928	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	CDS	20090929	20091025	1	-	0	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	exon	20090929	20091025	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	intron	20091026	20091123	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	CDS	20091124	20091231	1	-	0	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	exon	20091124	20091231	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	intron	20091232	20091343	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	CDS	20091344	20091490	1	-	0	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	exon	20091344	20091490	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	intron	20091491	20091637	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	CDS	20091638	20091740	1	-	1	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	exon	20091638	20091740	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	intron	20091741	20091881	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	CDS	20091882	20091976	0.85	-	0	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	exon	20091882	20091976	.	-	.	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
Ledus.S1	AUGUSTUS	start_codon	20091974	20091976	.	-	0	transcript_id "Ledus.S1G226300.t1"; gene_id "Ledus.S1G226300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg55.t1 is derived from g9468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	150935	152587	.	-	.	Ledus.C8G001500
Ledus.C8	AUGUSTUS	transcript	150935	152587	.	-	.	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	stop_codon	150932	150934	.	-	0	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	CDS	150935	151157	1	-	1	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	exon	150935	151157	.	-	.	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	intron	151158	151242	.	-	.	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	CDS	151243	151478	1	-	0	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	exon	151243	151478	.	-	.	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	intron	151479	151546	.	-	.	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	CDS	151547	151819	1	-	0	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	exon	151547	151819	.	-	.	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	intron	151820	151965	.	-	.	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	CDS	151966	152109	1	-	0	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	exon	151966	152109	.	-	.	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	intron	152110	152177	.	-	.	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	CDS	152178	152252	1	-	0	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	exon	152178	152252	.	-	.	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	intron	152253	152341	.	-	.	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	CDS	152342	152587	0.98	-	0	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	exon	152342	152587	.	-	.	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
Ledus.C8	AUGUSTUS	start_codon	152585	152587	.	-	0	transcript_id "Ledus.C8G001500.t1"; gene_id "Ledus.C8G001500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8823.t1 is derived from g9853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2165121	2170131	.	-	.	Ledus.S3G030000
Ledus.S3	AUGUSTUS	transcript	2165121	2170131	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	stop_codon	2165118	2165120	.	-	0	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	CDS	2165121	2165156	1	-	0	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	exon	2165121	2165156	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	intron	2165157	2165311	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	CDS	2165312	2165488	1	-	0	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	exon	2165312	2165488	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	intron	2165489	2165642	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	CDS	2165643	2165732	1	-	0	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	exon	2165643	2165732	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	intron	2165733	2165869	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	CDS	2165870	2165935	1	-	0	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	exon	2165870	2165935	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	intron	2165936	2166080	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	CDS	2166081	2166178	1	-	2	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	exon	2166081	2166178	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	intron	2166179	2166342	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	CDS	2166343	2166478	1	-	0	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	exon	2166343	2166478	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	intron	2166479	2166557	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	CDS	2166558	2168013	1	-	1	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	exon	2166558	2168013	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	intron	2168014	2168931	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	CDS	2168932	2169144	1	-	1	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	exon	2168932	2169144	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	intron	2169145	2169288	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	CDS	2169289	2169721	0.98	-	2	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	exon	2169289	2169721	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	intron	2169722	2169812	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	CDS	2169813	2170131	0.92	-	0	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	exon	2169813	2170131	.	-	.	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
Ledus.S3	AUGUSTUS	start_codon	2170129	2170131	.	-	0	transcript_id "Ledus.S3G030000.t1"; gene_id "Ledus.S3G030000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7484.t1 is derived from g12155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3245215	3245511	.	-	.	Ledus.S5G026200
Ledus.S5	AUGUSTUS	transcript	3245215	3245511	.	-	.	transcript_id "Ledus.S5G026200.t1"; gene_id "Ledus.S5G026200"
Ledus.S5	AUGUSTUS	stop_codon	3245212	3245214	.	-	0	transcript_id "Ledus.S5G026200.t1"; gene_id "Ledus.S5G026200"
Ledus.S5	AUGUSTUS	CDS	3245215	3245511	0.9	-	0	transcript_id "Ledus.S5G026200.t1"; gene_id "Ledus.S5G026200"
Ledus.S5	AUGUSTUS	exon	3245215	3245511	.	-	.	transcript_id "Ledus.S5G026200.t1"; gene_id "Ledus.S5G026200"
Ledus.S5	AUGUSTUS	start_codon	3245509	3245511	.	-	0	transcript_id "Ledus.S5G026200.t1"; gene_id "Ledus.S5G026200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10274.t1 is derived from g11304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13966459	13968372	.	-	.	Ledus.S3G175100
Ledus.S3	AUGUSTUS	transcript	13966459	13968372	.	-	.	transcript_id "Ledus.S3G175100.t1"; gene_id "Ledus.S3G175100"
Ledus.S3	AUGUSTUS	stop_codon	13966456	13966458	.	-	0	transcript_id "Ledus.S3G175100.t1"; gene_id "Ledus.S3G175100"
Ledus.S3	AUGUSTUS	CDS	13966459	13966728	1	-	0	transcript_id "Ledus.S3G175100.t1"; gene_id "Ledus.S3G175100"
Ledus.S3	AUGUSTUS	exon	13966459	13966728	.	-	.	transcript_id "Ledus.S3G175100.t1"; gene_id "Ledus.S3G175100"
Ledus.S3	AUGUSTUS	intron	13966729	13966823	.	-	.	transcript_id "Ledus.S3G175100.t1"; gene_id "Ledus.S3G175100"
Ledus.S3	AUGUSTUS	CDS	13966824	13967352	1	-	1	transcript_id "Ledus.S3G175100.t1"; gene_id "Ledus.S3G175100"
Ledus.S3	AUGUSTUS	exon	13966824	13967352	.	-	.	transcript_id "Ledus.S3G175100.t1"; gene_id "Ledus.S3G175100"
Ledus.S3	AUGUSTUS	intron	13967353	13967452	.	-	.	transcript_id "Ledus.S3G175100.t1"; gene_id "Ledus.S3G175100"
Ledus.S3	AUGUSTUS	CDS	13967453	13968372	0.81	-	0	transcript_id "Ledus.S3G175100.t1"; gene_id "Ledus.S3G175100"
Ledus.S3	AUGUSTUS	exon	13967453	13968372	.	-	.	transcript_id "Ledus.S3G175100.t1"; gene_id "Ledus.S3G175100"
Ledus.S3	AUGUSTUS	start_codon	13968370	13968372	.	-	0	transcript_id "Ledus.S3G175100.t1"; gene_id "Ledus.S3G175100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7199.t1 is derived from g6730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2080756	2087667	.	+	.	Ledus.C7G026000
Ledus.C7	AUGUSTUS	transcript	2080756	2087667	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	start_codon	2080756	2080758	.	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2080756	2080866	1	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2080756	2080866	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2080867	2081196	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2081197	2081298	1	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2081197	2081298	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2081299	2081408	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2081409	2081552	0.98	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2081409	2081552	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2081553	2081789	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2081790	2081870	1	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2081790	2081870	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2081871	2082040	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2082041	2082110	1	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2082041	2082110	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2082111	2082198	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2082199	2082269	1	+	2	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2082199	2082269	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2082270	2082364	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2082365	2082528	1	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2082365	2082528	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2082529	2082665	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2082666	2082737	1	+	1	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2082666	2082737	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2082738	2082919	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2082920	2083166	1	+	1	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2082920	2083166	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2083167	2083507	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2083508	2083570	1	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2083508	2083570	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2083571	2083668	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2083669	2083953	0.58	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2083669	2083953	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2083954	2084056	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2084057	2084170	0.96	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2084057	2084170	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2084171	2084336	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2084337	2084442	0.99	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2084337	2084442	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2084443	2084525	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2084526	2084695	1	+	2	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2084526	2084695	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2084696	2084818	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2084819	2084923	1	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2084819	2084923	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2084924	2085009	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2085010	2085113	1	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2085010	2085113	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2085114	2085317	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2085318	2085630	1	+	1	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2085318	2085630	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2085631	2085773	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2085774	2086009	1	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2085774	2086009	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2086010	2086228	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2086229	2086756	0.82	+	1	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2086229	2086756	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2086757	2086849	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2086850	2087147	1	+	1	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2086850	2087147	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2087148	2087225	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2087226	2087409	1	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2087226	2087409	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	intron	2087410	2087590	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	CDS	2087591	2087667	1	+	2	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	exon	2087591	2087667	.	+	.	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
Ledus.C7	AUGUSTUS	stop_codon	2087668	2087670	.	+	0	transcript_id "Ledus.C7G026000.t1"; gene_id "Ledus.C7G026000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6067.t1 is derived from g3510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28808837	28809139	.	-	.	Ledus.S1G348800
Ledus.S1	AUGUSTUS	transcript	28808837	28809139	.	-	.	transcript_id "Ledus.S1G348800.t1"; gene_id "Ledus.S1G348800"
Ledus.S1	AUGUSTUS	stop_codon	28808834	28808836	.	-	0	transcript_id "Ledus.S1G348800.t1"; gene_id "Ledus.S1G348800"
Ledus.S1	AUGUSTUS	CDS	28808837	28809139	0.53	-	0	transcript_id "Ledus.S1G348800.t1"; gene_id "Ledus.S1G348800"
Ledus.S1	AUGUSTUS	exon	28808837	28809139	.	-	.	transcript_id "Ledus.S1G348800.t1"; gene_id "Ledus.S1G348800"
Ledus.S1	AUGUSTUS	start_codon	28809137	28809139	.	-	0	transcript_id "Ledus.S1G348800.t1"; gene_id "Ledus.S1G348800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3401.t1 is derived from g836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8093991	8096475	.	+	.	Ledus.S1G082200
Ledus.S1	AUGUSTUS	transcript	8093991	8096475	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	start_codon	8093991	8093993	.	+	0	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	CDS	8093991	8094995	0.96	+	0	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	exon	8093991	8094995	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	intron	8094996	8095117	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	CDS	8095118	8095210	1	+	0	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	exon	8095118	8095210	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	intron	8095211	8095301	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	CDS	8095302	8095430	1	+	0	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	exon	8095302	8095430	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	intron	8095431	8095543	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	CDS	8095544	8095597	1	+	0	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	exon	8095544	8095597	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	intron	8095598	8095735	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	CDS	8095736	8095816	1	+	0	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	exon	8095736	8095816	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	intron	8095817	8095973	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	CDS	8095974	8096036	1	+	0	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	exon	8095974	8096036	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	intron	8096037	8096151	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	CDS	8096152	8096270	1	+	0	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	exon	8096152	8096270	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	intron	8096271	8096369	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	CDS	8096370	8096475	1	+	1	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	exon	8096370	8096475	.	+	.	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
Ledus.S1	AUGUSTUS	stop_codon	8096476	8096478	.	+	0	transcript_id "Ledus.S1G082200.t1"; gene_id "Ledus.S1G082200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4123.t1 is derived from g1559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14813486	14813728	.	-	.	Ledus.S1G154400
Ledus.S1	AUGUSTUS	transcript	14813486	14813728	.	-	.	transcript_id "Ledus.S1G154400.t1"; gene_id "Ledus.S1G154400"
Ledus.S1	AUGUSTUS	stop_codon	14813483	14813485	.	-	0	transcript_id "Ledus.S1G154400.t1"; gene_id "Ledus.S1G154400"
Ledus.S1	AUGUSTUS	CDS	14813486	14813728	1	-	0	transcript_id "Ledus.S1G154400.t1"; gene_id "Ledus.S1G154400"
Ledus.S1	AUGUSTUS	exon	14813486	14813728	.	-	.	transcript_id "Ledus.S1G154400.t1"; gene_id "Ledus.S1G154400"
Ledus.S1	AUGUSTUS	start_codon	14813726	14813728	.	-	0	transcript_id "Ledus.S1G154400.t1"; gene_id "Ledus.S1G154400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3435.t1 is derived from g870.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8357639	8362715	.	+	.	Ledus.S1G085600
Ledus.S1	AUGUSTUS	transcript	8357639	8362715	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	start_codon	8357639	8357641	.	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8357639	8357794	0.98	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8357639	8357794	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8357795	8357941	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8357942	8358006	1	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8357942	8358006	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8358007	8358096	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8358097	8358184	1	+	1	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8358097	8358184	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8358185	8358335	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8358336	8358412	1	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8358336	8358412	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8358413	8358498	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8358499	8358637	0.98	+	1	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8358499	8358637	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8358638	8358759	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8358760	8358860	0.99	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8358760	8358860	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8358861	8358998	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8358999	8359088	1	+	1	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8358999	8359088	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8359089	8359173	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8359174	8359252	1	+	1	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8359174	8359252	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8359253	8359344	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8359345	8359407	1	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8359345	8359407	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8359408	8359504	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8359505	8359612	1	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8359505	8359612	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8359613	8359697	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8359698	8359774	1	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8359698	8359774	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8359775	8359896	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8359897	8359963	1	+	1	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8359897	8359963	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8359964	8360052	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8360053	8360215	0.98	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8360053	8360215	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8360216	8360356	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8360357	8360494	0.66	+	2	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8360357	8360494	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8360495	8361114	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8361115	8361302	0.56	+	2	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8361115	8361302	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8361303	8361438	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8361439	8361684	0.98	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8361439	8361684	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8361685	8361828	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8361829	8362140	1	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8361829	8362140	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8362141	8362275	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8362276	8362395	1	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8362276	8362395	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	intron	8362396	8362667	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	CDS	8362668	8362715	0.99	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	exon	8362668	8362715	.	+	.	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
Ledus.S1	AUGUSTUS	stop_codon	8362716	8362718	.	+	0	transcript_id "Ledus.S1G085600.t1"; gene_id "Ledus.S1G085600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5044.t1 is derived from g2483.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21275079	21275351	.	+	.	Ledus.S1G246500
Ledus.S1	AUGUSTUS	transcript	21275079	21275351	.	+	.	transcript_id "Ledus.S1G246500.t1"; gene_id "Ledus.S1G246500"
Ledus.S1	AUGUSTUS	start_codon	21275079	21275081	.	+	0	transcript_id "Ledus.S1G246500.t1"; gene_id "Ledus.S1G246500"
Ledus.S1	AUGUSTUS	CDS	21275079	21275351	0.75	+	0	transcript_id "Ledus.S1G246500.t1"; gene_id "Ledus.S1G246500"
Ledus.S1	AUGUSTUS	exon	21275079	21275351	.	+	.	transcript_id "Ledus.S1G246500.t1"; gene_id "Ledus.S1G246500"
Ledus.S1	AUGUSTUS	stop_codon	21275352	21275354	.	+	0	transcript_id "Ledus.S1G246500.t1"; gene_id "Ledus.S1G246500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10642.t1 is derived from g11672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16827560	16828251	.	-	.	Ledus.S3G211900
Ledus.S3	AUGUSTUS	transcript	16827560	16828251	.	-	.	transcript_id "Ledus.S3G211900.t1"; gene_id "Ledus.S3G211900"
Ledus.S3	AUGUSTUS	stop_codon	16827557	16827559	.	-	0	transcript_id "Ledus.S3G211900.t1"; gene_id "Ledus.S3G211900"
Ledus.S3	AUGUSTUS	CDS	16827560	16827595	0.61	-	0	transcript_id "Ledus.S3G211900.t1"; gene_id "Ledus.S3G211900"
Ledus.S3	AUGUSTUS	exon	16827560	16827595	.	-	.	transcript_id "Ledus.S3G211900.t1"; gene_id "Ledus.S3G211900"
Ledus.S3	AUGUSTUS	intron	16827596	16827684	.	-	.	transcript_id "Ledus.S3G211900.t1"; gene_id "Ledus.S3G211900"
Ledus.S3	AUGUSTUS	CDS	16827685	16827735	0.71	-	0	transcript_id "Ledus.S3G211900.t1"; gene_id "Ledus.S3G211900"
Ledus.S3	AUGUSTUS	exon	16827685	16827735	.	-	.	transcript_id "Ledus.S3G211900.t1"; gene_id "Ledus.S3G211900"
Ledus.S3	AUGUSTUS	intron	16827736	16828053	.	-	.	transcript_id "Ledus.S3G211900.t1"; gene_id "Ledus.S3G211900"
Ledus.S3	AUGUSTUS	CDS	16828054	16828251	1	-	0	transcript_id "Ledus.S3G211900.t1"; gene_id "Ledus.S3G211900"
Ledus.S3	AUGUSTUS	exon	16828054	16828251	.	-	.	transcript_id "Ledus.S3G211900.t1"; gene_id "Ledus.S3G211900"
Ledus.S3	AUGUSTUS	start_codon	16828249	16828251	.	-	0	transcript_id "Ledus.S3G211900.t1"; gene_id "Ledus.S3G211900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8380.t1 is derived from g13052.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11377457	11377666	.	+	.	Ledus.S5G115800
Ledus.S5	AUGUSTUS	transcript	11377457	11377666	.	+	.	transcript_id "Ledus.S5G115800.t1"; gene_id "Ledus.S5G115800"
Ledus.S5	AUGUSTUS	start_codon	11377457	11377459	.	+	0	transcript_id "Ledus.S5G115800.t1"; gene_id "Ledus.S5G115800"
Ledus.S5	AUGUSTUS	CDS	11377457	11377666	0.93	+	0	transcript_id "Ledus.S5G115800.t1"; gene_id "Ledus.S5G115800"
Ledus.S5	AUGUSTUS	exon	11377457	11377666	.	+	.	transcript_id "Ledus.S5G115800.t1"; gene_id "Ledus.S5G115800"
Ledus.S5	AUGUSTUS	stop_codon	11377667	11377669	.	+	0	transcript_id "Ledus.S5G115800.t1"; gene_id "Ledus.S5G115800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5266.t1 is derived from g2705.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22791825	22792283	.	-	.	Ledus.S1G268700
Ledus.S1	AUGUSTUS	transcript	22791825	22792283	.	-	.	transcript_id "Ledus.S1G268700.t1"; gene_id "Ledus.S1G268700"
Ledus.S1	AUGUSTUS	stop_codon	22791822	22791824	.	-	0	transcript_id "Ledus.S1G268700.t1"; gene_id "Ledus.S1G268700"
Ledus.S1	AUGUSTUS	CDS	22791825	22792283	0.69	-	0	transcript_id "Ledus.S1G268700.t1"; gene_id "Ledus.S1G268700"
Ledus.S1	AUGUSTUS	exon	22791825	22792283	.	-	.	transcript_id "Ledus.S1G268700.t1"; gene_id "Ledus.S1G268700"
Ledus.S1	AUGUSTUS	start_codon	22792281	22792283	.	-	0	transcript_id "Ledus.S1G268700.t1"; gene_id "Ledus.S1G268700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2017.t1 is derived from g8880.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14201493	14203379	.	-	.	Ledus.S2G189900
Ledus.S2	AUGUSTUS	transcript	14201493	14203379	.	-	.	transcript_id "Ledus.S2G189900.t1"; gene_id "Ledus.S2G189900"
Ledus.S2	AUGUSTUS	stop_codon	14201490	14201492	.	-	0	transcript_id "Ledus.S2G189900.t1"; gene_id "Ledus.S2G189900"
Ledus.S2	AUGUSTUS	CDS	14201493	14203379	0.99	-	0	transcript_id "Ledus.S2G189900.t1"; gene_id "Ledus.S2G189900"
Ledus.S2	AUGUSTUS	exon	14201493	14203379	.	-	.	transcript_id "Ledus.S2G189900.t1"; gene_id "Ledus.S2G189900"
Ledus.S2	AUGUSTUS	start_codon	14203377	14203379	.	-	0	transcript_id "Ledus.S2G189900.t1"; gene_id "Ledus.S2G189900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg226.t1 is derived from g7087.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	999926	1000668	.	+	.	Ledus.S2G010800
Ledus.S2	AUGUSTUS	transcript	999926	1000668	.	+	.	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	start_codon	999926	999928	.	+	0	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	CDS	999926	1000044	0.99	+	0	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	exon	999926	1000044	.	+	.	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	intron	1000045	1000132	.	+	.	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	CDS	1000133	1000205	1	+	1	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	exon	1000133	1000205	.	+	.	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	intron	1000206	1000320	.	+	.	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	CDS	1000321	1000421	0.96	+	0	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	exon	1000321	1000421	.	+	.	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	intron	1000422	1000535	.	+	.	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	CDS	1000536	1000668	0.96	+	1	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	exon	1000536	1000668	.	+	.	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
Ledus.S2	AUGUSTUS	stop_codon	1000669	1000671	.	+	0	transcript_id "Ledus.S2G010800.t1"; gene_id "Ledus.S2G010800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8706.t1 is derived from g9736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1516390	1520445	.	+	.	Ledus.S3G018300
Ledus.S3	AUGUSTUS	transcript	1516390	1520445	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	start_codon	1516390	1516392	.	+	0	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1516390	1516534	1	+	0	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1516390	1516534	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1516535	1516688	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1516689	1516723	0.99	+	2	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1516689	1516723	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1516724	1516841	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1516842	1516979	0.96	+	0	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1516842	1516979	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1516980	1517181	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1517182	1517250	0.69	+	0	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1517182	1517250	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1517251	1517336	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1517337	1517433	0.5	+	0	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1517337	1517433	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1517434	1517583	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1517584	1517768	0.8	+	2	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1517584	1517768	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1517769	1517915	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1517916	1517969	1	+	0	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1517916	1517969	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1517970	1518124	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1518125	1518213	1	+	0	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1518125	1518213	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1518214	1518354	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1518355	1518471	1	+	1	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1518355	1518471	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1518472	1518598	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1518599	1518735	1	+	1	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1518599	1518735	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1518736	1518815	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1518816	1518894	1	+	2	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1518816	1518894	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1518895	1518979	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1518980	1519036	1	+	1	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1518980	1519036	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1519037	1519115	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1519116	1519216	0.75	+	1	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1519116	1519216	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1519217	1519807	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1519808	1520273	0.75	+	2	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1519808	1520273	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	intron	1520274	1520417	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	CDS	1520418	1520445	0.62	+	1	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	exon	1520418	1520445	.	+	.	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
Ledus.S3	AUGUSTUS	stop_codon	1520446	1520448	.	+	0	transcript_id "Ledus.S3G018300.t1"; gene_id "Ledus.S3G018300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2169.t1 is derived from g9032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15554692	15554898	.	+	.	Ledus.S2G205100
Ledus.S2	AUGUSTUS	transcript	15554692	15554898	.	+	.	transcript_id "Ledus.S2G205100.t1"; gene_id "Ledus.S2G205100"
Ledus.S2	AUGUSTUS	start_codon	15554692	15554694	.	+	0	transcript_id "Ledus.S2G205100.t1"; gene_id "Ledus.S2G205100"
Ledus.S2	AUGUSTUS	CDS	15554692	15554898	0.35	+	0	transcript_id "Ledus.S2G205100.t1"; gene_id "Ledus.S2G205100"
Ledus.S2	AUGUSTUS	exon	15554692	15554898	.	+	.	transcript_id "Ledus.S2G205100.t1"; gene_id "Ledus.S2G205100"
Ledus.S2	AUGUSTUS	stop_codon	15554899	15554901	.	+	0	transcript_id "Ledus.S2G205100.t1"; gene_id "Ledus.S2G205100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11566.t1 is derived from g5184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5304757	5305698	.	+	.	Ledus.S4G072200
Ledus.S4	AUGUSTUS	transcript	5304757	5305698	.	+	.	transcript_id "Ledus.S4G072200.t1"; gene_id "Ledus.S4G072200"
Ledus.S4	AUGUSTUS	start_codon	5304757	5304759	.	+	0	transcript_id "Ledus.S4G072200.t1"; gene_id "Ledus.S4G072200"
Ledus.S4	AUGUSTUS	CDS	5304757	5304870	0.34	+	0	transcript_id "Ledus.S4G072200.t1"; gene_id "Ledus.S4G072200"
Ledus.S4	AUGUSTUS	exon	5304757	5304870	.	+	.	transcript_id "Ledus.S4G072200.t1"; gene_id "Ledus.S4G072200"
Ledus.S4	AUGUSTUS	intron	5304871	5304977	.	+	.	transcript_id "Ledus.S4G072200.t1"; gene_id "Ledus.S4G072200"
Ledus.S4	AUGUSTUS	CDS	5304978	5305190	1	+	0	transcript_id "Ledus.S4G072200.t1"; gene_id "Ledus.S4G072200"
Ledus.S4	AUGUSTUS	exon	5304978	5305190	.	+	.	transcript_id "Ledus.S4G072200.t1"; gene_id "Ledus.S4G072200"
Ledus.S4	AUGUSTUS	intron	5305191	5305284	.	+	.	transcript_id "Ledus.S4G072200.t1"; gene_id "Ledus.S4G072200"
Ledus.S4	AUGUSTUS	CDS	5305285	5305698	1	+	0	transcript_id "Ledus.S4G072200.t1"; gene_id "Ledus.S4G072200"
Ledus.S4	AUGUSTUS	exon	5305285	5305698	.	+	.	transcript_id "Ledus.S4G072200.t1"; gene_id "Ledus.S4G072200"
Ledus.S4	AUGUSTUS	stop_codon	5305699	5305701	.	+	0	transcript_id "Ledus.S4G072200.t1"; gene_id "Ledus.S4G072200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3403.t1 is derived from g838.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8099520	8100861	.	-	.	Ledus.S1G082400
Ledus.S1	AUGUSTUS	transcript	8099520	8100861	.	-	.	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	stop_codon	8099517	8099519	.	-	0	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	CDS	8099520	8099637	0.5	-	1	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	exon	8099520	8099637	.	-	.	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	intron	8099638	8099869	.	-	.	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	CDS	8099870	8099969	0.27	-	2	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	exon	8099870	8099969	.	-	.	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	intron	8099970	8100053	.	-	.	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	CDS	8100054	8100181	0.32	-	1	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	exon	8100054	8100181	.	-	.	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	intron	8100182	8100499	.	-	.	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	CDS	8100500	8100513	0.62	-	0	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	exon	8100500	8100513	.	-	.	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	intron	8100514	8100720	.	-	.	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	CDS	8100721	8100861	0.85	-	0	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	exon	8100721	8100861	.	-	.	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
Ledus.S1	AUGUSTUS	start_codon	8100859	8100861	.	-	0	transcript_id "Ledus.S1G082400.t1"; gene_id "Ledus.S1G082400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7758.t1 is derived from g12429.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6077349	6078086	.	-	.	Ledus.S5G053600
Ledus.S5	AUGUSTUS	transcript	6077349	6078086	.	-	.	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	stop_codon	6077346	6077348	.	-	0	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	CDS	6077349	6077429	0.98	-	0	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	exon	6077349	6077429	.	-	.	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	intron	6077430	6077678	.	-	.	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	CDS	6077679	6077750	0.77	-	0	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	exon	6077679	6077750	.	-	.	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	intron	6077751	6077876	.	-	.	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	CDS	6077877	6077889	0.95	-	1	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	exon	6077877	6077889	.	-	.	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	intron	6077890	6078036	.	-	.	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	CDS	6078037	6078086	0.56	-	0	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	exon	6078037	6078086	.	-	.	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
Ledus.S5	AUGUSTUS	start_codon	6078084	6078086	.	-	0	transcript_id "Ledus.S5G053600.t1"; gene_id "Ledus.S5G053600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9410.t1 is derived from g10440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6592737	6597336	.	+	.	Ledus.S3G088700
Ledus.S3	AUGUSTUS	transcript	6592737	6597336	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	start_codon	6592737	6592739	.	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6592737	6592913	0.54	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6592737	6592913	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6592914	6593011	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6593012	6593164	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6593012	6593164	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6593165	6593256	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6593257	6593334	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6593257	6593334	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6593335	6593483	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6593484	6593600	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6593484	6593600	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6593601	6593720	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6593721	6593814	0.99	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6593721	6593814	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6593815	6593900	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6593901	6593973	1	+	2	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6593901	6593973	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6593974	6594084	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6594085	6594171	0.95	+	1	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6594085	6594171	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6594172	6594280	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6594281	6594341	0.46	+	1	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6594281	6594341	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6594342	6594454	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6594455	6594502	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6594455	6594502	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6594503	6594595	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6594596	6594698	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6594596	6594698	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6594699	6594810	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6594811	6594878	1	+	2	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6594811	6594878	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6594879	6595040	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6595041	6595100	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6595041	6595100	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6595101	6595315	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6595316	6595425	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6595316	6595425	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6595426	6595543	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6595544	6595670	1	+	1	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6595544	6595670	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6595671	6595749	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6595750	6595797	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6595750	6595797	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6595798	6595889	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6595890	6595964	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6595890	6595964	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6595965	6596054	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6596055	6596144	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6596055	6596144	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6596145	6596265	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6596266	6596433	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6596266	6596433	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6596434	6596586	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6596587	6596736	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6596587	6596736	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6596737	6596836	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6596837	6596917	0.92	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6596837	6596917	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6596918	6597020	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6597021	6597080	0.69	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6597021	6597080	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	intron	6597081	6597192	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	CDS	6597193	6597336	1	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	exon	6597193	6597336	.	+	.	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
Ledus.S3	AUGUSTUS	stop_codon	6597337	6597339	.	+	0	transcript_id "Ledus.S3G088700.t1"; gene_id "Ledus.S3G088700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10805.t1 is derived from g11837.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17855585	17857374	.	+	.	Ledus.S3G228200
Ledus.S3	AUGUSTUS	transcript	17855585	17857374	.	+	.	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	start_codon	17855585	17855587	.	+	0	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	CDS	17855585	17855863	0.97	+	0	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	exon	17855585	17855863	.	+	.	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	intron	17855864	17855946	.	+	.	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	CDS	17855947	17856099	1	+	0	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	exon	17855947	17856099	.	+	.	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	intron	17856100	17856197	.	+	.	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	CDS	17856198	17856248	1	+	0	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	exon	17856198	17856248	.	+	.	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	intron	17856249	17856351	.	+	.	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	CDS	17856352	17856553	1	+	0	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	exon	17856352	17856553	.	+	.	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	intron	17856554	17856640	.	+	.	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	CDS	17856641	17856969	1	+	2	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	exon	17856641	17856969	.	+	.	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	intron	17856970	17857050	.	+	.	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	CDS	17857051	17857374	1	+	0	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	exon	17857051	17857374	.	+	.	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
Ledus.S3	AUGUSTUS	stop_codon	17857375	17857377	.	+	0	transcript_id "Ledus.S3G228200.t1"; gene_id "Ledus.S3G228200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1630.t1 is derived from g8491.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11483053	11486094	.	-	.	Ledus.S2G151200
Ledus.S2	AUGUSTUS	transcript	11483053	11486094	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	stop_codon	11483050	11483052	.	-	0	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11483053	11483244	0.99	-	0	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11483053	11483244	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11483245	11483411	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11483412	11483639	1	-	0	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11483412	11483639	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11483640	11483730	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11483731	11483927	1	-	2	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11483731	11483927	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11483928	11484017	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11484018	11484213	0.48	-	0	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11484018	11484213	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11484214	11484441	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11484442	11484645	1	-	0	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11484442	11484645	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11484646	11484742	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11484743	11484864	0.91	-	2	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11484743	11484864	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11484865	11484967	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11484968	11485106	0.86	-	0	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11484968	11485106	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11485107	11485231	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11485232	11485536	1	-	2	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11485232	11485536	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11485537	11485635	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11485636	11485727	1	-	1	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11485636	11485727	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11485728	11485900	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11485901	11486094	0.96	-	0	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11485901	11486094	.	-	.	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	start_codon	11486092	11486094	.	-	0	transcript_id "Ledus.S2G151200.t1"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	transcript	11483053	11486094	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	stop_codon	11483050	11483052	.	-	0	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11483053	11483244	0.98	-	0	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11483053	11483244	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11483245	11483411	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11483412	11483639	1	-	0	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11483412	11483639	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11483640	11483730	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11483731	11483927	1	-	2	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11483731	11483927	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11483928	11484017	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11484018	11484213	0.38	-	0	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11484018	11484213	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11484214	11484441	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11484442	11484645	1	-	0	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11484442	11484645	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11484646	11484742	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11484743	11484864	0.91	-	2	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11484743	11484864	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11484865	11484967	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11484968	11485106	0.82	-	0	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11484968	11485106	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11485107	11485231	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11485232	11485539	1	-	2	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11485232	11485539	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11485540	11485635	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11485636	11485727	1	-	1	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11485636	11485727	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	intron	11485728	11485900	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	CDS	11485901	11486094	0.99	-	0	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	exon	11485901	11486094	.	-	.	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
Ledus.S2	AUGUSTUS	start_codon	11486092	11486094	.	-	0	transcript_id "Ledus.S2G151200.t2"; gene_id "Ledus.S2G151200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10525.t1 is derived from g11555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15938735	15942710	.	+	.	Ledus.S3G200200
Ledus.S3	AUGUSTUS	transcript	15938735	15942710	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	start_codon	15938735	15938737	.	+	0	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	CDS	15938735	15939036	0.99	+	0	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	exon	15938735	15939036	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	intron	15939037	15939310	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	CDS	15939311	15939383	1	+	1	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	exon	15939311	15939383	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	intron	15939384	15939744	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	CDS	15939745	15940158	0.96	+	0	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	exon	15939745	15940158	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	intron	15940159	15940270	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	CDS	15940271	15940403	0.97	+	0	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	exon	15940271	15940403	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	intron	15940404	15940742	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	CDS	15940743	15940870	0.97	+	2	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	exon	15940743	15940870	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	intron	15940871	15940941	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	CDS	15940942	15941535	0.93	+	0	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	exon	15940942	15941535	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	intron	15941536	15941648	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	CDS	15941649	15941789	0.4	+	0	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	exon	15941649	15941789	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	intron	15941790	15941885	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	CDS	15941886	15941990	1	+	0	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	exon	15941886	15941990	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	intron	15941991	15942094	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	CDS	15942095	15942194	1	+	0	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	exon	15942095	15942194	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	intron	15942195	15942286	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	CDS	15942287	15942379	1	+	2	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	exon	15942287	15942379	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	intron	15942380	15942450	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	CDS	15942451	15942710	1	+	2	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	exon	15942451	15942710	.	+	.	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
Ledus.S3	AUGUSTUS	stop_codon	15942711	15942713	.	+	0	transcript_id "Ledus.S3G200200.t1"; gene_id "Ledus.S3G200200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10607.t1 is derived from g11637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16400933	16401390	.	-	.	Ledus.S3G208400
Ledus.S3	AUGUSTUS	transcript	16400933	16401390	.	-	.	transcript_id "Ledus.S3G208400.t1"; gene_id "Ledus.S3G208400"
Ledus.S3	AUGUSTUS	stop_codon	16400930	16400932	.	-	0	transcript_id "Ledus.S3G208400.t1"; gene_id "Ledus.S3G208400"
Ledus.S3	AUGUSTUS	CDS	16400933	16401109	1	-	0	transcript_id "Ledus.S3G208400.t1"; gene_id "Ledus.S3G208400"
Ledus.S3	AUGUSTUS	exon	16400933	16401109	.	-	.	transcript_id "Ledus.S3G208400.t1"; gene_id "Ledus.S3G208400"
Ledus.S3	AUGUSTUS	intron	16401110	16401195	.	-	.	transcript_id "Ledus.S3G208400.t1"; gene_id "Ledus.S3G208400"
Ledus.S3	AUGUSTUS	CDS	16401196	16401390	0.96	-	0	transcript_id "Ledus.S3G208400.t1"; gene_id "Ledus.S3G208400"
Ledus.S3	AUGUSTUS	exon	16401196	16401390	.	-	.	transcript_id "Ledus.S3G208400.t1"; gene_id "Ledus.S3G208400"
Ledus.S3	AUGUSTUS	start_codon	16401388	16401390	.	-	0	transcript_id "Ledus.S3G208400.t1"; gene_id "Ledus.S3G208400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8145.t1 is derived from g12816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9365783	9367037	.	+	.	Ledus.S5G092300
Ledus.S5	AUGUSTUS	transcript	9365783	9367037	.	+	.	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	start_codon	9365783	9365785	.	+	0	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	CDS	9365783	9366016	0.94	+	0	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	exon	9365783	9366016	.	+	.	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	intron	9366017	9366110	.	+	.	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	CDS	9366111	9366302	1	+	0	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	exon	9366111	9366302	.	+	.	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	intron	9366303	9366387	.	+	.	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	CDS	9366388	9366553	1	+	0	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	exon	9366388	9366553	.	+	.	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	intron	9366554	9366636	.	+	.	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	CDS	9366637	9367037	0.99	+	2	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	exon	9366637	9367037	.	+	.	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
Ledus.S5	AUGUSTUS	stop_codon	9367038	9367040	.	+	0	transcript_id "Ledus.S5G092300.t1"; gene_id "Ledus.S5G092300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8802.t1 is derived from g9832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2045703	2046146	.	+	.	Ledus.S3G027900
Ledus.S3	AUGUSTUS	transcript	2045703	2046146	.	+	.	transcript_id "Ledus.S3G027900.t1"; gene_id "Ledus.S3G027900"
Ledus.S3	AUGUSTUS	start_codon	2045703	2045705	.	+	0	transcript_id "Ledus.S3G027900.t1"; gene_id "Ledus.S3G027900"
Ledus.S3	AUGUSTUS	CDS	2045703	2046146	0.78	+	0	transcript_id "Ledus.S3G027900.t1"; gene_id "Ledus.S3G027900"
Ledus.S3	AUGUSTUS	exon	2045703	2046146	.	+	.	transcript_id "Ledus.S3G027900.t1"; gene_id "Ledus.S3G027900"
Ledus.S3	AUGUSTUS	stop_codon	2046147	2046149	.	+	0	transcript_id "Ledus.S3G027900.t1"; gene_id "Ledus.S3G027900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11928.t1 is derived from g5547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7845128	7846732	.	+	.	Ledus.S4G108400
Ledus.S4	AUGUSTUS	transcript	7845128	7846732	.	+	.	transcript_id "Ledus.S4G108400.t1"; gene_id "Ledus.S4G108400"
Ledus.S4	AUGUSTUS	start_codon	7845128	7845130	.	+	0	transcript_id "Ledus.S4G108400.t1"; gene_id "Ledus.S4G108400"
Ledus.S4	AUGUSTUS	CDS	7845128	7846732	0.94	+	0	transcript_id "Ledus.S4G108400.t1"; gene_id "Ledus.S4G108400"
Ledus.S4	AUGUSTUS	exon	7845128	7846732	.	+	.	transcript_id "Ledus.S4G108400.t1"; gene_id "Ledus.S4G108400"
Ledus.S4	AUGUSTUS	stop_codon	7846733	7846735	.	+	0	transcript_id "Ledus.S4G108400.t1"; gene_id "Ledus.S4G108400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6598.t1 is derived from g4041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32596432	32596875	.	+	.	Ledus.S1G401900
Ledus.S1	AUGUSTUS	transcript	32596432	32596875	.	+	.	transcript_id "Ledus.S1G401900.t1"; gene_id "Ledus.S1G401900"
Ledus.S1	AUGUSTUS	start_codon	32596432	32596434	.	+	0	transcript_id "Ledus.S1G401900.t1"; gene_id "Ledus.S1G401900"
Ledus.S1	AUGUSTUS	CDS	32596432	32596875	0.85	+	0	transcript_id "Ledus.S1G401900.t1"; gene_id "Ledus.S1G401900"
Ledus.S1	AUGUSTUS	exon	32596432	32596875	.	+	.	transcript_id "Ledus.S1G401900.t1"; gene_id "Ledus.S1G401900"
Ledus.S1	AUGUSTUS	stop_codon	32596876	32596878	.	+	0	transcript_id "Ledus.S1G401900.t1"; gene_id "Ledus.S1G401900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4296.t1 is derived from g1732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16090262	16091550	.	-	.	Ledus.S1G171700
Ledus.S1	AUGUSTUS	transcript	16090262	16091550	.	-	.	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	stop_codon	16090259	16090261	.	-	0	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	CDS	16090262	16090678	0.98	-	0	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	exon	16090262	16090678	.	-	.	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	intron	16090679	16090777	.	-	.	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	CDS	16090778	16090858	1	-	0	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	exon	16090778	16090858	.	-	.	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	intron	16090859	16090933	.	-	.	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	CDS	16090934	16091140	1	-	0	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	exon	16090934	16091140	.	-	.	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	intron	16091141	16091265	.	-	.	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	CDS	16091266	16091550	1	-	0	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	exon	16091266	16091550	.	-	.	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
Ledus.S1	AUGUSTUS	start_codon	16091548	16091550	.	-	0	transcript_id "Ledus.S1G171700.t1"; gene_id "Ledus.S1G171700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3598.t1 is derived from g1034.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9931314	9935887	.	-	.	Ledus.S1G101900
Ledus.S1	AUGUSTUS	transcript	9931314	9935887	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	stop_codon	9931311	9931313	.	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9931314	9931418	1	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9931314	9931418	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9931419	9931494	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9931495	9931772	0.65	-	2	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9931495	9931772	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9931773	9931948	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9931949	9931985	0.67	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9931949	9931985	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9931986	9932060	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9932061	9932198	1	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9932061	9932198	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9932199	9932292	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9932293	9932391	1	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9932293	9932391	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9932392	9932488	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9932489	9932569	1	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9932489	9932569	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9932570	9932767	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9932768	9932830	1	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9932768	9932830	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9932831	9932905	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9932906	9933436	0.35	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9932906	9933436	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9933437	9933542	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9933543	9933644	1	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9933543	9933644	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9933645	9933754	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9933755	9933879	0.99	-	2	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9933755	9933879	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9933880	9934056	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9934057	9934123	1	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9934057	9934123	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9934124	9934198	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9934199	9934258	0.99	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9934199	9934258	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9934259	9934366	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9934367	9934445	0.98	-	1	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9934367	9934445	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9934446	9934535	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9934536	9934639	1	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9934536	9934639	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9934640	9934717	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9934718	9934850	0.46	-	1	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9934718	9934850	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9934851	9935318	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9935319	9935407	0.95	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9935319	9935407	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9935408	9935496	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9935497	9935560	0.99	-	1	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9935497	9935560	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9935561	9935652	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9935653	9935724	1	-	1	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9935653	9935724	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	intron	9935725	9935870	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	CDS	9935871	9935887	0.69	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	exon	9935871	9935887	.	-	.	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
Ledus.S1	AUGUSTUS	start_codon	9935885	9935887	.	-	0	transcript_id "Ledus.S1G101900.t1"; gene_id "Ledus.S1G101900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3387.t1 is derived from g822.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8014144	8015720	.	+	.	Ledus.S1G080800
Ledus.S1	AUGUSTUS	transcript	8014144	8015720	.	+	.	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	start_codon	8014144	8014146	.	+	0	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	CDS	8014144	8014370	1	+	0	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	exon	8014144	8014370	.	+	.	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	intron	8014371	8014448	.	+	.	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	CDS	8014449	8014617	1	+	1	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	exon	8014449	8014617	.	+	.	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	intron	8014618	8014700	.	+	.	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	CDS	8014701	8014780	1	+	0	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	exon	8014701	8014780	.	+	.	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	intron	8014781	8014844	.	+	.	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	CDS	8014845	8015272	1	+	1	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	exon	8014845	8015272	.	+	.	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	intron	8015273	8015424	.	+	.	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	CDS	8015425	8015720	1	+	2	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	exon	8015425	8015720	.	+	.	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
Ledus.S1	AUGUSTUS	stop_codon	8015721	8015723	.	+	0	transcript_id "Ledus.S1G080800.t1"; gene_id "Ledus.S1G080800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5481.t1 is derived from g2920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24485788	24486956	.	-	.	Ledus.S1G290200
Ledus.S1	AUGUSTUS	transcript	24485788	24486956	.	-	.	transcript_id "Ledus.S1G290200.t1"; gene_id "Ledus.S1G290200"
Ledus.S1	AUGUSTUS	stop_codon	24485785	24485787	.	-	0	transcript_id "Ledus.S1G290200.t1"; gene_id "Ledus.S1G290200"
Ledus.S1	AUGUSTUS	CDS	24485788	24485929	1	-	1	transcript_id "Ledus.S1G290200.t1"; gene_id "Ledus.S1G290200"
Ledus.S1	AUGUSTUS	exon	24485788	24485929	.	-	.	transcript_id "Ledus.S1G290200.t1"; gene_id "Ledus.S1G290200"
Ledus.S1	AUGUSTUS	intron	24485930	24486009	.	-	.	transcript_id "Ledus.S1G290200.t1"; gene_id "Ledus.S1G290200"
Ledus.S1	AUGUSTUS	CDS	24486010	24486956	1	-	0	transcript_id "Ledus.S1G290200.t1"; gene_id "Ledus.S1G290200"
Ledus.S1	AUGUSTUS	exon	24486010	24486956	.	-	.	transcript_id "Ledus.S1G290200.t1"; gene_id "Ledus.S1G290200"
Ledus.S1	AUGUSTUS	start_codon	24486954	24486956	.	-	0	transcript_id "Ledus.S1G290200.t1"; gene_id "Ledus.S1G290200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3602.t1 is derived from g1038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9946773	9948105	.	-	.	Ledus.S1G102300
Ledus.S1	AUGUSTUS	transcript	9946773	9948105	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	stop_codon	9946770	9946772	.	-	0	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	CDS	9946773	9946777	0.88	-	2	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	exon	9946773	9946777	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	intron	9946778	9946929	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	CDS	9946930	9946994	1	-	1	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	exon	9946930	9946994	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	intron	9946995	9947084	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	CDS	9947085	9947137	1	-	0	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	exon	9947085	9947137	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	intron	9947138	9947326	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	CDS	9947327	9947416	1	-	0	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	exon	9947327	9947416	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	intron	9947417	9947881	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	CDS	9947882	9947886	1	-	2	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	exon	9947882	9947886	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	intron	9947887	9947996	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	CDS	9947997	9948003	0.98	-	0	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	exon	9947997	9948003	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	intron	9948004	9948102	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	CDS	9948103	9948105	0.98	-	0	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	exon	9948103	9948105	.	-	.	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
Ledus.S1	AUGUSTUS	start_codon	9948103	9948105	.	-	0	transcript_id "Ledus.S1G102300.t1"; gene_id "Ledus.S1G102300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12572.t1 is derived from g6194.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12923223	12926084	.	-	.	Ledus.S4G172800
Ledus.S4	AUGUSTUS	transcript	12923223	12926084	.	-	.	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	stop_codon	12923220	12923222	.	-	0	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	CDS	12923223	12924624	0.86	-	1	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	exon	12923223	12924624	.	-	.	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	intron	12924625	12925213	.	-	.	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	CDS	12925214	12925225	0.5	-	1	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	exon	12925214	12925225	.	-	.	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	intron	12925226	12925448	.	-	.	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	CDS	12925449	12925578	0.99	-	2	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	exon	12925449	12925578	.	-	.	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	intron	12925579	12925951	.	-	.	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	CDS	12925952	12926084	1	-	0	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	exon	12925952	12926084	.	-	.	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
Ledus.S4	AUGUSTUS	start_codon	12926082	12926084	.	-	0	transcript_id "Ledus.S4G172800.t1"; gene_id "Ledus.S4G172800"
# This transcript jg763.t2 is derived from g7624.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg764.t1 is derived from g7625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4867517	4868671	.	-	.	Ledus.S2G064600
Ledus.S2	AUGUSTUS	transcript	4867517	4868671	.	-	.	transcript_id "Ledus.S2G064600.t1"; gene_id "Ledus.S2G064600"
Ledus.S2	AUGUSTUS	stop_codon	4867514	4867516	.	-	0	transcript_id "Ledus.S2G064600.t1"; gene_id "Ledus.S2G064600"
Ledus.S2	AUGUSTUS	CDS	4867517	4868671	1	-	0	transcript_id "Ledus.S2G064600.t1"; gene_id "Ledus.S2G064600"
Ledus.S2	AUGUSTUS	exon	4867517	4868671	.	-	.	transcript_id "Ledus.S2G064600.t1"; gene_id "Ledus.S2G064600"
Ledus.S2	AUGUSTUS	start_codon	4868669	4868671	.	-	0	transcript_id "Ledus.S2G064600.t1"; gene_id "Ledus.S2G064600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5908.t1 is derived from g3351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27738094	27739066	.	-	.	Ledus.S1G332900
Ledus.S1	AUGUSTUS	transcript	27738094	27739066	.	-	.	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	stop_codon	27738091	27738093	.	-	0	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	CDS	27738094	27738137	1	-	2	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	exon	27738094	27738137	.	-	.	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	intron	27738138	27738215	.	-	.	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	CDS	27738216	27738416	1	-	2	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	exon	27738216	27738416	.	-	.	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	intron	27738417	27738502	.	-	.	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	CDS	27738503	27738668	1	-	0	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	exon	27738503	27738668	.	-	.	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	intron	27738669	27738748	.	-	.	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	CDS	27738749	27738815	1	-	1	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	exon	27738749	27738815	.	-	.	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	intron	27738816	27738900	.	-	.	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	CDS	27738901	27738938	1	-	0	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	exon	27738901	27738938	.	-	.	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	intron	27738939	27739018	.	-	.	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	CDS	27739019	27739066	0.78	-	0	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	exon	27739019	27739066	.	-	.	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
Ledus.S1	AUGUSTUS	start_codon	27739064	27739066	.	-	0	transcript_id "Ledus.S1G332900.t1"; gene_id "Ledus.S1G332900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5460.t1 is derived from g2899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24399700	24400119	.	-	.	Ledus.S1G288100
Ledus.S1	AUGUSTUS	transcript	24399700	24400119	.	-	.	transcript_id "Ledus.S1G288100.t1"; gene_id "Ledus.S1G288100"
Ledus.S1	AUGUSTUS	stop_codon	24399697	24399699	.	-	0	transcript_id "Ledus.S1G288100.t1"; gene_id "Ledus.S1G288100"
Ledus.S1	AUGUSTUS	CDS	24399700	24399914	0.96	-	2	transcript_id "Ledus.S1G288100.t1"; gene_id "Ledus.S1G288100"
Ledus.S1	AUGUSTUS	exon	24399700	24399914	.	-	.	transcript_id "Ledus.S1G288100.t1"; gene_id "Ledus.S1G288100"
Ledus.S1	AUGUSTUS	intron	24399915	24400031	.	-	.	transcript_id "Ledus.S1G288100.t1"; gene_id "Ledus.S1G288100"
Ledus.S1	AUGUSTUS	CDS	24400032	24400119	0.48	-	0	transcript_id "Ledus.S1G288100.t1"; gene_id "Ledus.S1G288100"
Ledus.S1	AUGUSTUS	exon	24400032	24400119	.	-	.	transcript_id "Ledus.S1G288100.t1"; gene_id "Ledus.S1G288100"
Ledus.S1	AUGUSTUS	start_codon	24400117	24400119	.	-	0	transcript_id "Ledus.S1G288100.t1"; gene_id "Ledus.S1G288100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9659.t1 is derived from g10689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8851620	8857094	.	+	.	Ledus.S3G113600
Ledus.S3	AUGUSTUS	transcript	8851620	8857094	.	+	.	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	start_codon	8851620	8851622	.	+	0	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	CDS	8851620	8851653	0.41	+	0	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	exon	8851620	8851653	.	+	.	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	intron	8851654	8851887	.	+	.	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	CDS	8851888	8851898	0.84	+	2	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	exon	8851888	8851898	.	+	.	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	intron	8851899	8852103	.	+	.	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	CDS	8852104	8853259	0.47	+	0	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	exon	8852104	8853259	.	+	.	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	intron	8853260	8853587	.	+	.	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	CDS	8853588	8853628	0.41	+	2	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	exon	8853588	8853628	.	+	.	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	intron	8853629	8853776	.	+	.	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	CDS	8853777	8853801	0.61	+	0	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	exon	8853777	8853801	.	+	.	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	intron	8853802	8853882	.	+	.	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	CDS	8853883	8857094	0.65	+	2	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	exon	8853883	8857094	.	+	.	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
Ledus.S3	AUGUSTUS	stop_codon	8857095	8857097	.	+	0	transcript_id "Ledus.S3G113600.t1"; gene_id "Ledus.S3G113600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg814.t1 is derived from g7675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5258156	5261362	.	-	.	Ledus.S2G069600
Ledus.S2	AUGUSTUS	transcript	5258156	5261362	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	stop_codon	5258153	5258155	.	-	0	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	CDS	5258156	5258293	1	-	0	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	exon	5258156	5258293	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	intron	5258294	5258584	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	CDS	5258585	5258710	1	-	0	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	exon	5258585	5258710	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	intron	5258711	5258906	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	CDS	5258907	5259046	1	-	2	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	exon	5258907	5259046	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	intron	5259047	5259436	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	CDS	5259437	5259494	0.39	-	0	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	exon	5259437	5259494	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	intron	5259495	5259589	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	CDS	5259590	5259666	0.3	-	2	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	exon	5259590	5259666	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	intron	5259667	5260080	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	CDS	5260081	5260092	0.74	-	2	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	exon	5260081	5260092	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	intron	5260093	5260233	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	CDS	5260234	5260303	0.98	-	0	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	exon	5260234	5260303	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	intron	5260304	5260435	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	CDS	5260436	5260469	1	-	1	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	exon	5260436	5260469	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	intron	5260470	5260546	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	CDS	5260547	5260590	0.8	-	0	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	exon	5260547	5260590	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	intron	5260591	5260666	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	CDS	5260667	5261089	0.99	-	0	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	exon	5260667	5261089	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	intron	5261090	5261179	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	CDS	5261180	5261362	0.72	-	0	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	exon	5261180	5261362	.	-	.	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
Ledus.S2	AUGUSTUS	start_codon	5261360	5261362	.	-	0	transcript_id "Ledus.S2G069600.t1"; gene_id "Ledus.S2G069600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9556.t1 is derived from g10586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7765874	7766503	.	-	.	Ledus.S3G103300
Ledus.S3	AUGUSTUS	transcript	7765874	7766503	.	-	.	transcript_id "Ledus.S3G103300.t1"; gene_id "Ledus.S3G103300"
Ledus.S3	AUGUSTUS	stop_codon	7765871	7765873	.	-	0	transcript_id "Ledus.S3G103300.t1"; gene_id "Ledus.S3G103300"
Ledus.S3	AUGUSTUS	CDS	7765874	7765966	1	-	0	transcript_id "Ledus.S3G103300.t1"; gene_id "Ledus.S3G103300"
Ledus.S3	AUGUSTUS	exon	7765874	7765966	.	-	.	transcript_id "Ledus.S3G103300.t1"; gene_id "Ledus.S3G103300"
Ledus.S3	AUGUSTUS	intron	7765967	7766043	.	-	.	transcript_id "Ledus.S3G103300.t1"; gene_id "Ledus.S3G103300"
Ledus.S3	AUGUSTUS	CDS	7766044	7766185	1	-	1	transcript_id "Ledus.S3G103300.t1"; gene_id "Ledus.S3G103300"
Ledus.S3	AUGUSTUS	exon	7766044	7766185	.	-	.	transcript_id "Ledus.S3G103300.t1"; gene_id "Ledus.S3G103300"
Ledus.S3	AUGUSTUS	intron	7766186	7766285	.	-	.	transcript_id "Ledus.S3G103300.t1"; gene_id "Ledus.S3G103300"
Ledus.S3	AUGUSTUS	CDS	7766286	7766503	1	-	0	transcript_id "Ledus.S3G103300.t1"; gene_id "Ledus.S3G103300"
Ledus.S3	AUGUSTUS	exon	7766286	7766503	.	-	.	transcript_id "Ledus.S3G103300.t1"; gene_id "Ledus.S3G103300"
Ledus.S3	AUGUSTUS	start_codon	7766501	7766503	.	-	0	transcript_id "Ledus.S3G103300.t1"; gene_id "Ledus.S3G103300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7323.t1 is derived from g11994.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1178545	1180408	.	+	.	Ledus.S5G010100
Ledus.S5	AUGUSTUS	transcript	1178545	1180408	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	start_codon	1178545	1178547	.	+	0	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	CDS	1178545	1178590	0.67	+	0	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	exon	1178545	1178590	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	intron	1178591	1179013	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	CDS	1179014	1179096	0.58	+	2	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	exon	1179014	1179096	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	intron	1179097	1179222	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	CDS	1179223	1179367	0.47	+	0	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	exon	1179223	1179367	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	intron	1179368	1179506	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	CDS	1179507	1179619	0.99	+	2	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	exon	1179507	1179619	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	intron	1179620	1179736	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	CDS	1179737	1179975	1	+	0	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	exon	1179737	1179975	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	intron	1179976	1180060	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	CDS	1180061	1180246	1	+	1	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	exon	1180061	1180246	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	intron	1180247	1180341	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	CDS	1180342	1180408	0.97	+	1	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	exon	1180342	1180408	.	+	.	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
Ledus.S5	AUGUSTUS	stop_codon	1180409	1180411	.	+	0	transcript_id "Ledus.S5G010100.t1"; gene_id "Ledus.S5G010100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12393.t1 is derived from g6014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11619768	11620594	.	+	.	Ledus.S4G154900
Ledus.S4	AUGUSTUS	transcript	11619768	11620594	.	+	.	transcript_id "Ledus.S4G154900.t1"; gene_id "Ledus.S4G154900"
Ledus.S4	AUGUSTUS	start_codon	11619768	11619770	.	+	0	transcript_id "Ledus.S4G154900.t1"; gene_id "Ledus.S4G154900"
Ledus.S4	AUGUSTUS	CDS	11619768	11619797	0.53	+	0	transcript_id "Ledus.S4G154900.t1"; gene_id "Ledus.S4G154900"
Ledus.S4	AUGUSTUS	exon	11619768	11619797	.	+	.	transcript_id "Ledus.S4G154900.t1"; gene_id "Ledus.S4G154900"
Ledus.S4	AUGUSTUS	intron	11619798	11619921	.	+	.	transcript_id "Ledus.S4G154900.t1"; gene_id "Ledus.S4G154900"
Ledus.S4	AUGUSTUS	CDS	11619922	11619978	0.54	+	0	transcript_id "Ledus.S4G154900.t1"; gene_id "Ledus.S4G154900"
Ledus.S4	AUGUSTUS	exon	11619922	11619978	.	+	.	transcript_id "Ledus.S4G154900.t1"; gene_id "Ledus.S4G154900"
Ledus.S4	AUGUSTUS	intron	11619979	11620078	.	+	.	transcript_id "Ledus.S4G154900.t1"; gene_id "Ledus.S4G154900"
Ledus.S4	AUGUSTUS	CDS	11620079	11620594	0.95	+	0	transcript_id "Ledus.S4G154900.t1"; gene_id "Ledus.S4G154900"
Ledus.S4	AUGUSTUS	exon	11620079	11620594	.	+	.	transcript_id "Ledus.S4G154900.t1"; gene_id "Ledus.S4G154900"
Ledus.S4	AUGUSTUS	stop_codon	11620595	11620597	.	+	0	transcript_id "Ledus.S4G154900.t1"; gene_id "Ledus.S4G154900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12801.t1 is derived from g6423.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14704141	14707915	.	+	.	Ledus.S4G195700
Ledus.S4	AUGUSTUS	transcript	14704141	14707915	.	+	.	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	start_codon	14704141	14704143	.	+	0	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	CDS	14704141	14704935	0.99	+	0	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	exon	14704141	14704935	.	+	.	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	intron	14704936	14705764	.	+	.	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	CDS	14705765	14705866	1	+	0	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	exon	14705765	14705866	.	+	.	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	intron	14705867	14706386	.	+	.	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	CDS	14706387	14707019	0.95	+	0	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	exon	14706387	14707019	.	+	.	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	intron	14707020	14707241	.	+	.	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	CDS	14707242	14707419	0.94	+	0	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	exon	14707242	14707419	.	+	.	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	intron	14707420	14707817	.	+	.	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	CDS	14707818	14707915	0.94	+	2	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	exon	14707818	14707915	.	+	.	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
Ledus.S4	AUGUSTUS	stop_codon	14707916	14707918	.	+	0	transcript_id "Ledus.S4G195700.t1"; gene_id "Ledus.S4G195700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13054.t1 is derived from g6864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4214748	4215035	.	+	.	Ledus.S6G011600
Ledus.S6	AUGUSTUS	transcript	4214748	4215035	.	+	.	transcript_id "Ledus.S6G011600.t1"; gene_id "Ledus.S6G011600"
Ledus.S6	AUGUSTUS	start_codon	4214748	4214750	.	+	0	transcript_id "Ledus.S6G011600.t1"; gene_id "Ledus.S6G011600"
Ledus.S6	AUGUSTUS	CDS	4214748	4215035	0.65	+	0	transcript_id "Ledus.S6G011600.t1"; gene_id "Ledus.S6G011600"
Ledus.S6	AUGUSTUS	exon	4214748	4215035	.	+	.	transcript_id "Ledus.S6G011600.t1"; gene_id "Ledus.S6G011600"
Ledus.S6	AUGUSTUS	stop_codon	4215036	4215038	.	+	0	transcript_id "Ledus.S6G011600.t1"; gene_id "Ledus.S6G011600"
# This transcript jg7242.t2 is derived from g11913.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7243.t1 is derived from g11914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	246656	262422	.	+	.	Ledus.S5G002100
Ledus.S5	AUGUSTUS	transcript	246656	262422	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	start_codon	246656	246658	.	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	246656	247860	0.48	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	246656	247860	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	247861	248149	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	248150	248255	1	+	1	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	248150	248255	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	248256	248467	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	248468	248569	0.86	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	248468	248569	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	248570	248700	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	248701	248796	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	248701	248796	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	248797	248904	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	248905	248990	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	248905	248990	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	248991	249236	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	249237	249357	1	+	1	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	249237	249357	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	249358	249595	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	249596	249706	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	249596	249706	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	249707	250487	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	250488	250550	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	250488	250550	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	250551	250654	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	250655	250816	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	250655	250816	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	250817	250926	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	250927	251141	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	250927	251141	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	251142	251351	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	251352	251853	1	+	1	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	251352	251853	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	251854	251984	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	251985	252071	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	251985	252071	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	252072	252368	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	252369	252449	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	252369	252449	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	252450	252633	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	252634	252711	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	252634	252711	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	252712	252899	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	252900	252947	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	252900	252947	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	252948	253143	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	253144	253221	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	253144	253221	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	253222	253388	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	253389	253442	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	253389	253442	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	253443	253709	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	253710	253769	0.99	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	253710	253769	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	253770	253868	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	253869	253955	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	253869	253955	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	253956	254208	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	254209	254300	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	254209	254300	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	254301	254429	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	254430	254532	1	+	1	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	254430	254532	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	254533	255154	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	255155	255210	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	255155	255210	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	255211	255323	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	255324	255438	1	+	1	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	255324	255438	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	255439	255556	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	255557	255706	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	255557	255706	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	255707	255805	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	255806	255886	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	255806	255886	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	255887	255973	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	255974	256048	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	255974	256048	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	256049	256341	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	256342	256409	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	256342	256409	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	256410	256499	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	256500	256611	1	+	1	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	256500	256611	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	256612	256750	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	256751	256882	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	256751	256882	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	256883	256973	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	256974	257075	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	256974	257075	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	257076	257165	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	257166	257852	0.94	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	257166	257852	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	257853	257954	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	257955	258553	0.98	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	257955	258553	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	258554	258850	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	258851	258974	1	+	1	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	258851	258974	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	258975	259107	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	259108	259164	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	259108	259164	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	259165	259288	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	259289	259340	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	259289	259340	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	259341	259434	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	259435	259498	1	+	2	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	259435	259498	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	259499	259574	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	259575	259634	0.94	+	1	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	259575	259634	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	259635	259739	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	259740	259829	0.9	+	1	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	259740	259829	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	259830	259930	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	259931	260162	1	+	1	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	259931	260162	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	260163	260244	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	260245	260370	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	260245	260370	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	260371	260479	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	260480	260656	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	260480	260656	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	260657	260863	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	260864	260947	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	260864	260947	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	260948	261068	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	261069	261177	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	261069	261177	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	261178	261299	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	261300	261460	0.99	+	2	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	261300	261460	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	261461	261576	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	261577	261654	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	261577	261654	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	261655	261772	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	261773	261883	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	261773	261883	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	261884	261988	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	261989	262060	1	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	261989	262060	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	intron	262061	262152	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	CDS	262153	262422	0.96	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	exon	262153	262422	.	+	.	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
Ledus.S5	AUGUSTUS	stop_codon	262423	262425	.	+	0	transcript_id "Ledus.S5G002100.t1"; gene_id "Ledus.S5G002100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8750.t1 is derived from g9780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1813182	1813460	.	+	.	Ledus.S3G022700
Ledus.S3	AUGUSTUS	transcript	1813182	1813460	.	+	.	transcript_id "Ledus.S3G022700.t1"; gene_id "Ledus.S3G022700"
Ledus.S3	AUGUSTUS	start_codon	1813182	1813184	.	+	0	transcript_id "Ledus.S3G022700.t1"; gene_id "Ledus.S3G022700"
Ledus.S3	AUGUSTUS	CDS	1813182	1813460	0.98	+	0	transcript_id "Ledus.S3G022700.t1"; gene_id "Ledus.S3G022700"
Ledus.S3	AUGUSTUS	exon	1813182	1813460	.	+	.	transcript_id "Ledus.S3G022700.t1"; gene_id "Ledus.S3G022700"
Ledus.S3	AUGUSTUS	stop_codon	1813461	1813463	.	+	0	transcript_id "Ledus.S3G022700.t1"; gene_id "Ledus.S3G022700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2750.t1 is derived from g184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3032500	3035788	.	+	.	Ledus.S1G017100
Ledus.S1	AUGUSTUS	transcript	3032500	3035788	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	start_codon	3032500	3032502	.	+	0	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3032500	3032736	0.4	+	0	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3032500	3032736	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3032737	3033077	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3033078	3033158	0.3	+	0	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3033078	3033158	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3033159	3033292	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3033293	3033406	1	+	0	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3033293	3033406	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3033407	3033550	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3033551	3033622	1	+	0	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3033551	3033622	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3033623	3033702	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3033703	3033746	1	+	0	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3033703	3033746	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3033747	3033837	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3033838	3033958	1	+	1	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3033838	3033958	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3033959	3034029	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3034030	3034095	1	+	0	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3034030	3034095	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3034096	3034268	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3034269	3034348	1	+	0	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3034269	3034348	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3034349	3034430	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3034431	3034530	1	+	1	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3034431	3034530	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3034531	3034676	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3034677	3034846	1	+	0	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3034677	3034846	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3034847	3034935	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3034936	3034976	1	+	1	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3034936	3034976	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3034977	3035106	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3035107	3035135	1	+	2	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3035107	3035135	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3035136	3035217	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3035218	3035287	1	+	0	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3035218	3035287	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3035288	3035372	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3035373	3035462	1	+	2	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3035373	3035462	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	intron	3035463	3035543	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	CDS	3035544	3035788	0.99	+	2	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	exon	3035544	3035788	.	+	.	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
Ledus.S1	AUGUSTUS	stop_codon	3035789	3035791	.	+	0	transcript_id "Ledus.S1G017100.t1"; gene_id "Ledus.S1G017100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8550.t1 is derived from g9580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	128576	130688	.	+	.	Ledus.S3G002700
Ledus.S3	AUGUSTUS	transcript	128576	130688	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	start_codon	128576	128578	.	+	0	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	128576	128671	0.99	+	0	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	128576	128671	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	128672	128751	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	128752	128961	1	+	0	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	128752	128961	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	128962	129039	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	129040	129193	1	+	0	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	129040	129193	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	129194	129276	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	129277	129320	1	+	2	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	129277	129320	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	129321	129433	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	129434	129544	1	+	0	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	129434	129544	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	129545	129873	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	129874	130467	1	+	0	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	129874	130467	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	130468	130571	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	130572	130688	0.98	+	0	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	130572	130688	.	+	.	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	stop_codon	130689	130691	.	+	0	transcript_id "Ledus.S3G002700.t1"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	transcript	128576	130688	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	start_codon	128576	128578	.	+	0	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	128576	128671	0.99	+	0	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	128576	128671	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	128672	128751	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	128752	128961	1	+	0	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	128752	128961	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	128962	129039	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	129040	129193	1	+	0	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	129040	129193	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	129194	129276	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	129277	129373	0.61	+	2	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	129277	129373	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	129374	129491	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	129492	129544	0.66	+	1	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	129492	129544	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	129545	129638	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	129639	129760	0.71	+	2	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	129639	129760	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	129761	129873	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	129874	130467	0.9	+	0	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	129874	130467	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	intron	130468	130571	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	CDS	130572	130688	0.99	+	0	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	exon	130572	130688	.	+	.	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
Ledus.S3	AUGUSTUS	stop_codon	130689	130691	.	+	0	transcript_id "Ledus.S3G002700.t2"; gene_id "Ledus.S3G002700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2207.t1 is derived from g9070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16032908	16033698	.	-	.	Ledus.S2G208900
Ledus.S2	AUGUSTUS	transcript	16032908	16033698	.	-	.	transcript_id "Ledus.S2G208900.t1"; gene_id "Ledus.S2G208900"
Ledus.S2	AUGUSTUS	stop_codon	16032905	16032907	.	-	0	transcript_id "Ledus.S2G208900.t1"; gene_id "Ledus.S2G208900"
Ledus.S2	AUGUSTUS	CDS	16032908	16033119	0.36	-	2	transcript_id "Ledus.S2G208900.t1"; gene_id "Ledus.S2G208900"
Ledus.S2	AUGUSTUS	exon	16032908	16033119	.	-	.	transcript_id "Ledus.S2G208900.t1"; gene_id "Ledus.S2G208900"
Ledus.S2	AUGUSTUS	intron	16033120	16033286	.	-	.	transcript_id "Ledus.S2G208900.t1"; gene_id "Ledus.S2G208900"
Ledus.S2	AUGUSTUS	CDS	16033287	16033698	0.57	-	0	transcript_id "Ledus.S2G208900.t1"; gene_id "Ledus.S2G208900"
Ledus.S2	AUGUSTUS	exon	16033287	16033698	.	-	.	transcript_id "Ledus.S2G208900.t1"; gene_id "Ledus.S2G208900"
Ledus.S2	AUGUSTUS	start_codon	16033696	16033698	.	-	0	transcript_id "Ledus.S2G208900.t1"; gene_id "Ledus.S2G208900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg680.t1 is derived from g7541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4158812	4159194	.	+	.	Ledus.S2G056200
Ledus.S2	AUGUSTUS	transcript	4158812	4159194	.	+	.	transcript_id "Ledus.S2G056200.t1"; gene_id "Ledus.S2G056200"
Ledus.S2	AUGUSTUS	start_codon	4158812	4158814	.	+	0	transcript_id "Ledus.S2G056200.t1"; gene_id "Ledus.S2G056200"
Ledus.S2	AUGUSTUS	CDS	4158812	4158872	0.89	+	0	transcript_id "Ledus.S2G056200.t1"; gene_id "Ledus.S2G056200"
Ledus.S2	AUGUSTUS	exon	4158812	4158872	.	+	.	transcript_id "Ledus.S2G056200.t1"; gene_id "Ledus.S2G056200"
Ledus.S2	AUGUSTUS	intron	4158873	4158964	.	+	.	transcript_id "Ledus.S2G056200.t1"; gene_id "Ledus.S2G056200"
Ledus.S2	AUGUSTUS	CDS	4158965	4159194	0.19	+	2	transcript_id "Ledus.S2G056200.t1"; gene_id "Ledus.S2G056200"
Ledus.S2	AUGUSTUS	exon	4158965	4159194	.	+	.	transcript_id "Ledus.S2G056200.t1"; gene_id "Ledus.S2G056200"
Ledus.S2	AUGUSTUS	stop_codon	4159195	4159197	.	+	0	transcript_id "Ledus.S2G056200.t1"; gene_id "Ledus.S2G056200"
# This transcript jg1481.t2 is derived from g8342.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1482.t1 is derived from g8343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10520799	10521534	.	+	.	Ledus.S2G136400
Ledus.S2	AUGUSTUS	transcript	10520799	10521534	.	+	.	transcript_id "Ledus.S2G136400.t1"; gene_id "Ledus.S2G136400"
Ledus.S2	AUGUSTUS	start_codon	10520799	10520801	.	+	0	transcript_id "Ledus.S2G136400.t1"; gene_id "Ledus.S2G136400"
Ledus.S2	AUGUSTUS	CDS	10520799	10520833	0.24	+	0	transcript_id "Ledus.S2G136400.t1"; gene_id "Ledus.S2G136400"
Ledus.S2	AUGUSTUS	exon	10520799	10520833	.	+	.	transcript_id "Ledus.S2G136400.t1"; gene_id "Ledus.S2G136400"
Ledus.S2	AUGUSTUS	intron	10520834	10521024	.	+	.	transcript_id "Ledus.S2G136400.t1"; gene_id "Ledus.S2G136400"
Ledus.S2	AUGUSTUS	CDS	10521025	10521268	0.36	+	1	transcript_id "Ledus.S2G136400.t1"; gene_id "Ledus.S2G136400"
Ledus.S2	AUGUSTUS	exon	10521025	10521268	.	+	.	transcript_id "Ledus.S2G136400.t1"; gene_id "Ledus.S2G136400"
Ledus.S2	AUGUSTUS	intron	10521269	10521465	.	+	.	transcript_id "Ledus.S2G136400.t1"; gene_id "Ledus.S2G136400"
Ledus.S2	AUGUSTUS	CDS	10521466	10521534	0.67	+	0	transcript_id "Ledus.S2G136400.t1"; gene_id "Ledus.S2G136400"
Ledus.S2	AUGUSTUS	exon	10521466	10521534	.	+	.	transcript_id "Ledus.S2G136400.t1"; gene_id "Ledus.S2G136400"
Ledus.S2	AUGUSTUS	stop_codon	10521535	10521537	.	+	0	transcript_id "Ledus.S2G136400.t1"; gene_id "Ledus.S2G136400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3830.t1 is derived from g1266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12847235	12848332	.	-	.	Ledus.S1G125100
Ledus.S1	AUGUSTUS	transcript	12847235	12848332	.	-	.	transcript_id "Ledus.S1G125100.t1"; gene_id "Ledus.S1G125100"
Ledus.S1	AUGUSTUS	stop_codon	12847232	12847234	.	-	0	transcript_id "Ledus.S1G125100.t1"; gene_id "Ledus.S1G125100"
Ledus.S1	AUGUSTUS	CDS	12847235	12848332	0.99	-	0	transcript_id "Ledus.S1G125100.t1"; gene_id "Ledus.S1G125100"
Ledus.S1	AUGUSTUS	exon	12847235	12848332	.	-	.	transcript_id "Ledus.S1G125100.t1"; gene_id "Ledus.S1G125100"
Ledus.S1	AUGUSTUS	start_codon	12848330	12848332	.	-	0	transcript_id "Ledus.S1G125100.t1"; gene_id "Ledus.S1G125100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3899.t1 is derived from g1335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13484678	13488136	.	+	.	Ledus.S1G132000
Ledus.S1	AUGUSTUS	transcript	13484678	13488136	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	start_codon	13484678	13484680	.	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13484678	13484786	0.48	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13484678	13484786	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	intron	13484787	13484964	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13484965	13485014	0.7	+	2	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13484965	13485014	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	intron	13485015	13485110	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13485111	13485302	0.99	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13485111	13485302	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	intron	13485303	13485386	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13485387	13485560	0.99	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13485387	13485560	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	intron	13485561	13485668	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13485669	13485755	0.99	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13485669	13485755	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	intron	13485756	13485839	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13485840	13485962	1	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13485840	13485962	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	intron	13485963	13486040	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13486041	13486223	1	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13486041	13486223	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	intron	13486224	13486297	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13486298	13486480	1	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13486298	13486480	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	intron	13486481	13486574	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13486575	13486793	1	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13486575	13486793	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	intron	13486794	13486870	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13486871	13487062	1	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13486871	13487062	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	intron	13487063	13487155	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13487156	13487338	1	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13487156	13487338	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	intron	13487339	13487426	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13487427	13487714	1	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13487427	13487714	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	intron	13487715	13487791	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	CDS	13487792	13488136	1	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	exon	13487792	13488136	.	+	.	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
Ledus.S1	AUGUSTUS	stop_codon	13488137	13488139	.	+	0	transcript_id "Ledus.S1G132000.t1"; gene_id "Ledus.S1G132000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11464.t1 is derived from g5082.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4484343	4488741	.	+	.	Ledus.S4G062000
Ledus.S4	AUGUSTUS	transcript	4484343	4488741	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	start_codon	4484343	4484345	.	+	0	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4484343	4484843	0.52	+	0	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4484343	4484843	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4484844	4485057	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4485058	4485204	0.9	+	0	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4485058	4485204	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4485205	4485402	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4485403	4485607	0.86	+	0	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4485403	4485607	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4485608	4485744	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4485745	4485983	0.85	+	2	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4485745	4485983	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4485984	4486073	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4486074	4486266	0.78	+	0	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4486074	4486266	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4486267	4486417	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4486418	4486580	1	+	2	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4486418	4486580	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4486581	4486713	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4486714	4486791	0.68	+	1	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4486714	4486791	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4486792	4486882	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4486883	4487057	1	+	1	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4486883	4487057	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4487058	4487154	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4487155	4487227	1	+	0	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4487155	4487227	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4487228	4487400	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4487401	4487639	1	+	2	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4487401	4487639	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4487640	4487735	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4487736	4487861	1	+	0	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4487736	4487861	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4487862	4487996	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4487997	4488158	0.99	+	0	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4487997	4488158	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4488159	4488273	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4488274	4488366	1	+	0	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4488274	4488366	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	intron	4488367	4488564	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	CDS	4488565	4488741	0.66	+	0	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	exon	4488565	4488741	.	+	.	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
Ledus.S4	AUGUSTUS	stop_codon	4488742	4488744	.	+	0	transcript_id "Ledus.S4G062000.t1"; gene_id "Ledus.S4G062000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13046.t1 is derived from g6856.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4084762	4085148	.	-	.	Ledus.S6G010800
Ledus.S6	AUGUSTUS	transcript	4084762	4085148	.	-	.	transcript_id "Ledus.S6G010800.t1"; gene_id "Ledus.S6G010800"
Ledus.S6	AUGUSTUS	stop_codon	4084759	4084761	.	-	0	transcript_id "Ledus.S6G010800.t1"; gene_id "Ledus.S6G010800"
Ledus.S6	AUGUSTUS	CDS	4084762	4085148	0.64	-	0	transcript_id "Ledus.S6G010800.t1"; gene_id "Ledus.S6G010800"
Ledus.S6	AUGUSTUS	exon	4084762	4085148	.	-	.	transcript_id "Ledus.S6G010800.t1"; gene_id "Ledus.S6G010800"
Ledus.S6	AUGUSTUS	start_codon	4085146	4085148	.	-	0	transcript_id "Ledus.S6G010800.t1"; gene_id "Ledus.S6G010800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5185.t1 is derived from g2624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22259470	22263745	.	+	.	Ledus.S1G260600
Ledus.S1	AUGUSTUS	transcript	22259470	22263745	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	start_codon	22259470	22259472	.	+	0	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22259470	22259748	0.8	+	0	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22259470	22259748	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	intron	22259749	22259840	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22259841	22260724	1	+	0	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22259841	22260724	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	intron	22260725	22260802	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22260803	22260934	1	+	1	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22260803	22260934	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	intron	22260935	22261024	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22261025	22261117	1	+	1	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22261025	22261117	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	intron	22261118	22261281	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22261282	22261402	1	+	1	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22261282	22261402	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	intron	22261403	22261530	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22261531	22261854	1	+	0	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22261531	22261854	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	intron	22261855	22261978	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22261979	22262043	1	+	0	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22261979	22262043	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	intron	22262044	22262295	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22262296	22262470	1	+	1	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22262296	22262470	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	intron	22262471	22262575	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22262576	22262683	1	+	0	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22262576	22262683	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	intron	22262684	22262820	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22262821	22262925	1	+	0	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22262821	22262925	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	intron	22262926	22263055	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22263056	22263250	1	+	0	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22263056	22263250	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	intron	22263251	22263337	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22263338	22263472	0.97	+	0	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22263338	22263472	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	intron	22263473	22263580	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	CDS	22263581	22263745	1	+	0	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	exon	22263581	22263745	.	+	.	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
Ledus.S1	AUGUSTUS	stop_codon	22263746	22263748	.	+	0	transcript_id "Ledus.S1G260600.t1"; gene_id "Ledus.S1G260600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1822.t1 is derived from g8685.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12745251	12746775	.	+	.	Ledus.S2G170400
Ledus.S2	AUGUSTUS	transcript	12745251	12746775	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	start_codon	12745251	12745253	.	+	0	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	CDS	12745251	12745263	0.72	+	0	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	exon	12745251	12745263	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	intron	12745264	12745440	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	CDS	12745441	12745555	0.72	+	2	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	exon	12745441	12745555	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	intron	12745556	12745641	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	CDS	12745642	12745864	1	+	1	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	exon	12745642	12745864	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	intron	12745865	12745957	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	CDS	12745958	12746044	1	+	0	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	exon	12745958	12746044	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	intron	12746045	12746124	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	CDS	12746125	12746271	1	+	0	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	exon	12746125	12746271	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	intron	12746272	12746366	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	CDS	12746367	12746459	1	+	0	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	exon	12746367	12746459	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	intron	12746460	12746547	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	CDS	12746548	12746775	1	+	0	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	exon	12746548	12746775	.	+	.	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
Ledus.S2	AUGUSTUS	stop_codon	12746776	12746778	.	+	0	transcript_id "Ledus.S2G170400.t1"; gene_id "Ledus.S2G170400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5601.t1 is derived from g3040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25325736	25327067	.	+	.	Ledus.S1G302200
Ledus.S1	AUGUSTUS	transcript	25325736	25327067	.	+	.	transcript_id "Ledus.S1G302200.t1"; gene_id "Ledus.S1G302200"
Ledus.S1	AUGUSTUS	start_codon	25325736	25325738	.	+	0	transcript_id "Ledus.S1G302200.t1"; gene_id "Ledus.S1G302200"
Ledus.S1	AUGUSTUS	CDS	25325736	25327067	1	+	0	transcript_id "Ledus.S1G302200.t1"; gene_id "Ledus.S1G302200"
Ledus.S1	AUGUSTUS	exon	25325736	25327067	.	+	.	transcript_id "Ledus.S1G302200.t1"; gene_id "Ledus.S1G302200"
Ledus.S1	AUGUSTUS	stop_codon	25327068	25327070	.	+	0	transcript_id "Ledus.S1G302200.t1"; gene_id "Ledus.S1G302200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6199.t1 is derived from g3642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29599525	29600412	.	+	.	Ledus.S1G362000
Ledus.S1	AUGUSTUS	transcript	29599525	29600412	.	+	.	transcript_id "Ledus.S1G362000.t1"; gene_id "Ledus.S1G362000"
Ledus.S1	AUGUSTUS	start_codon	29599525	29599527	.	+	0	transcript_id "Ledus.S1G362000.t1"; gene_id "Ledus.S1G362000"
Ledus.S1	AUGUSTUS	CDS	29599525	29599656	0.54	+	0	transcript_id "Ledus.S1G362000.t1"; gene_id "Ledus.S1G362000"
Ledus.S1	AUGUSTUS	exon	29599525	29599656	.	+	.	transcript_id "Ledus.S1G362000.t1"; gene_id "Ledus.S1G362000"
Ledus.S1	AUGUSTUS	intron	29599657	29599902	.	+	.	transcript_id "Ledus.S1G362000.t1"; gene_id "Ledus.S1G362000"
Ledus.S1	AUGUSTUS	CDS	29599903	29600412	0.42	+	0	transcript_id "Ledus.S1G362000.t1"; gene_id "Ledus.S1G362000"
Ledus.S1	AUGUSTUS	exon	29599903	29600412	.	+	.	transcript_id "Ledus.S1G362000.t1"; gene_id "Ledus.S1G362000"
Ledus.S1	AUGUSTUS	stop_codon	29600413	29600415	.	+	0	transcript_id "Ledus.S1G362000.t1"; gene_id "Ledus.S1G362000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11586.t1 is derived from g5204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5401193	5411045	.	+	.	Ledus.S4G074200
Ledus.S4	AUGUSTUS	transcript	5401193	5411045	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	start_codon	5401193	5401195	.	+	0	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5401193	5401268	0.98	+	0	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5401193	5401268	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5401269	5401492	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5401493	5401975	0.8	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5401493	5401975	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5401976	5402060	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5402061	5402480	0.53	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5402061	5402480	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5402481	5402730	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5402731	5403060	0.74	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5402731	5403060	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5403061	5403232	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5403233	5403568	0.98	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5403233	5403568	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5403569	5403723	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5403724	5404047	0.91	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5403724	5404047	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5404048	5404156	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5404157	5404293	0.64	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5404157	5404293	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5404294	5404425	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5404426	5404507	0.5	+	0	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5404426	5404507	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5404508	5404745	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5404746	5405060	0.95	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5404746	5405060	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5405061	5405166	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5405167	5405490	0.94	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5405167	5405490	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5405491	5405684	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5405685	5405816	0.5	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5405685	5405816	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5405817	5405948	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5405949	5406020	0.5	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5405949	5406020	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5406021	5406103	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5406104	5406421	1	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5406104	5406421	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5406422	5406703	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5406704	5407045	0.98	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5406704	5407045	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5407046	5407211	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5407212	5407520	1	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5407212	5407520	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5407521	5407752	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5407753	5407843	1	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5407753	5407843	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5407844	5408037	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5408038	5408256	1	+	1	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5408038	5408256	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5408257	5408428	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5408429	5408631	0.96	+	1	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5408429	5408631	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5408632	5408900	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5408901	5409175	1	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5408901	5409175	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5409176	5409273	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5409274	5409424	1	+	0	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5409274	5409424	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5409425	5409574	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5409575	5409732	1	+	2	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5409575	5409732	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5409733	5409935	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5409936	5410349	0.92	+	0	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5409936	5410349	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5410350	5410463	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5410464	5410763	1	+	0	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5410464	5410763	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5410764	5410850	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5410851	5411045	1	+	0	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5410851	5411045	.	+	.	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	stop_codon	5411046	5411048	.	+	0	transcript_id "Ledus.S4G074200.t1"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	transcript	5401193	5411045	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	start_codon	5401193	5401195	.	+	0	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5401193	5401268	0.98	+	0	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5401193	5401268	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5401269	5401492	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5401493	5401975	0.73	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5401493	5401975	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5401976	5402060	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5402061	5402480	0.51	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5402061	5402480	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5402481	5402730	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5402731	5403060	0.75	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5402731	5403060	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5403061	5403232	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5403233	5403568	0.97	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5403233	5403568	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5403569	5403723	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5403724	5404047	0.92	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5403724	5404047	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5404048	5404156	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5404157	5404293	0.63	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5404157	5404293	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5404294	5404425	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5404426	5404507	0.55	+	0	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5404426	5404507	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5404508	5404745	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5404746	5405060	0.97	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5404746	5405060	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5405061	5405166	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5405167	5405490	0.87	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5405167	5405490	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5405491	5405684	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5405685	5405816	0.51	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5405685	5405816	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5405817	5405948	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5405949	5406020	0.51	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5405949	5406020	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5406021	5406103	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5406104	5406421	1	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5406104	5406421	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5406422	5406703	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5406704	5407045	0.98	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5406704	5407045	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5407046	5407211	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5407212	5407520	1	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5407212	5407520	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5407521	5407752	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5407753	5407843	1	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5407753	5407843	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5407844	5408027	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5408028	5408036	0.58	+	1	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5408028	5408036	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5408037	5408115	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5408116	5408256	0.59	+	1	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5408116	5408256	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5408257	5408428	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5408429	5408631	0.97	+	1	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5408429	5408631	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5408632	5408900	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5408901	5409175	0.99	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5408901	5409175	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5409176	5409273	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5409274	5409424	1	+	0	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5409274	5409424	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5409425	5409574	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5409575	5409732	1	+	2	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5409575	5409732	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5409733	5409935	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5409936	5410349	0.96	+	0	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5409936	5410349	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5410350	5410463	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5410464	5410763	1	+	0	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5410464	5410763	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	intron	5410764	5410850	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	CDS	5410851	5411045	1	+	0	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	exon	5410851	5411045	.	+	.	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
Ledus.S4	AUGUSTUS	stop_codon	5411046	5411048	.	+	0	transcript_id "Ledus.S4G074200.t2"; gene_id "Ledus.S4G074200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4777.t1 is derived from g2215.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19695796	19697194	.	+	.	Ledus.S1G219800
Ledus.S1	AUGUSTUS	transcript	19695796	19697194	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	start_codon	19695796	19695798	.	+	0	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	CDS	19695796	19696025	0.96	+	0	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	exon	19695796	19696025	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	intron	19696026	19696111	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	CDS	19696112	19696199	1	+	1	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	exon	19696112	19696199	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	intron	19696200	19696276	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	CDS	19696277	19696372	1	+	0	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	exon	19696277	19696372	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	intron	19696373	19696496	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	CDS	19696497	19696571	1	+	0	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	exon	19696497	19696571	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	intron	19696572	19696666	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	CDS	19696667	19696749	1	+	0	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	exon	19696667	19696749	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	intron	19696750	19696848	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	CDS	19696849	19696917	1	+	1	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	exon	19696849	19696917	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	intron	19696918	19696998	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	CDS	19696999	19697062	1	+	1	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	exon	19696999	19697062	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	intron	19697063	19697146	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	CDS	19697147	19697194	0.98	+	0	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	exon	19697147	19697194	.	+	.	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
Ledus.S1	AUGUSTUS	stop_codon	19697195	19697197	.	+	0	transcript_id "Ledus.S1G219800.t1"; gene_id "Ledus.S1G219800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11474.t1 is derived from g5092.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4659259	4660104	.	+	.	Ledus.S4G063000
Ledus.S4	AUGUSTUS	transcript	4659259	4660104	.	+	.	transcript_id "Ledus.S4G063000.t1"; gene_id "Ledus.S4G063000"
Ledus.S4	AUGUSTUS	start_codon	4659259	4659261	.	+	0	transcript_id "Ledus.S4G063000.t1"; gene_id "Ledus.S4G063000"
Ledus.S4	AUGUSTUS	CDS	4659259	4659446	1	+	0	transcript_id "Ledus.S4G063000.t1"; gene_id "Ledus.S4G063000"
Ledus.S4	AUGUSTUS	exon	4659259	4659446	.	+	.	transcript_id "Ledus.S4G063000.t1"; gene_id "Ledus.S4G063000"
Ledus.S4	AUGUSTUS	intron	4659447	4659831	.	+	.	transcript_id "Ledus.S4G063000.t1"; gene_id "Ledus.S4G063000"
Ledus.S4	AUGUSTUS	CDS	4659832	4659922	1	+	1	transcript_id "Ledus.S4G063000.t1"; gene_id "Ledus.S4G063000"
Ledus.S4	AUGUSTUS	exon	4659832	4659922	.	+	.	transcript_id "Ledus.S4G063000.t1"; gene_id "Ledus.S4G063000"
Ledus.S4	AUGUSTUS	intron	4659923	4660089	.	+	.	transcript_id "Ledus.S4G063000.t1"; gene_id "Ledus.S4G063000"
Ledus.S4	AUGUSTUS	CDS	4660090	4660104	1	+	0	transcript_id "Ledus.S4G063000.t1"; gene_id "Ledus.S4G063000"
Ledus.S4	AUGUSTUS	exon	4660090	4660104	.	+	.	transcript_id "Ledus.S4G063000.t1"; gene_id "Ledus.S4G063000"
Ledus.S4	AUGUSTUS	stop_codon	4660105	4660107	.	+	0	transcript_id "Ledus.S4G063000.t1"; gene_id "Ledus.S4G063000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5165.t1 is derived from g2604.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22048396	22050796	.	+	.	Ledus.S1G258600
Ledus.S1	AUGUSTUS	transcript	22048396	22050796	.	+	.	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	start_codon	22048396	22048398	.	+	0	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	CDS	22048396	22048778	0.71	+	0	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	exon	22048396	22048778	.	+	.	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	intron	22048779	22048891	.	+	.	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	CDS	22048892	22048952	0.96	+	1	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	exon	22048892	22048952	.	+	.	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	intron	22048953	22049046	.	+	.	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	CDS	22049047	22049179	1	+	0	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	exon	22049047	22049179	.	+	.	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	intron	22049180	22049273	.	+	.	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	CDS	22049274	22050796	0.96	+	2	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	exon	22049274	22050796	.	+	.	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
Ledus.S1	AUGUSTUS	stop_codon	22050797	22050799	.	+	0	transcript_id "Ledus.S1G258600.t1"; gene_id "Ledus.S1G258600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12745.t1 is derived from g6367.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14187683	14189400	.	+	.	Ledus.S4G190100
Ledus.S4	AUGUSTUS	transcript	14187683	14189400	.	+	.	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	start_codon	14187683	14187685	.	+	0	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	CDS	14187683	14187773	0.97	+	0	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	exon	14187683	14187773	.	+	.	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	intron	14187774	14187862	.	+	.	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	CDS	14187863	14188156	1	+	2	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	exon	14187863	14188156	.	+	.	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	intron	14188157	14188243	.	+	.	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	CDS	14188244	14188347	1	+	2	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	exon	14188244	14188347	.	+	.	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	intron	14188348	14188523	.	+	.	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	CDS	14188524	14188688	1	+	0	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	exon	14188524	14188688	.	+	.	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	intron	14188689	14188784	.	+	.	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	CDS	14188785	14189045	1	+	0	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	exon	14188785	14189045	.	+	.	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	intron	14189046	14189142	.	+	.	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	CDS	14189143	14189400	0.94	+	0	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	exon	14189143	14189400	.	+	.	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
Ledus.S4	AUGUSTUS	stop_codon	14189401	14189403	.	+	0	transcript_id "Ledus.S4G190100.t1"; gene_id "Ledus.S4G190100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6137.t1 is derived from g3580.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29165175	29166015	.	-	.	Ledus.S1G355800
Ledus.S1	AUGUSTUS	transcript	29165175	29166015	.	-	.	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	stop_codon	29165172	29165174	.	-	0	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	CDS	29165175	29165253	1	-	1	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	exon	29165175	29165253	.	-	.	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	intron	29165254	29165352	.	-	.	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	CDS	29165353	29165410	1	-	2	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	exon	29165353	29165410	.	-	.	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	intron	29165411	29165507	.	-	.	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	CDS	29165508	29165563	1	-	1	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	exon	29165508	29165563	.	-	.	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	intron	29165564	29165648	.	-	.	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	CDS	29165649	29165689	1	-	0	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	exon	29165649	29165689	.	-	.	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	intron	29165690	29165773	.	-	.	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	CDS	29165774	29165906	1	-	1	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	exon	29165774	29165906	.	-	.	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	intron	29165907	29165971	.	-	.	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	CDS	29165972	29166015	1	-	0	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	exon	29165972	29166015	.	-	.	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
Ledus.S1	AUGUSTUS	start_codon	29166013	29166015	.	-	0	transcript_id "Ledus.S1G355800.t1"; gene_id "Ledus.S1G355800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2894.t1 is derived from g329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4428940	4437069	.	-	.	Ledus.S1G031500
Ledus.S1	AUGUSTUS	transcript	4428940	4437069	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	stop_codon	4428937	4428939	.	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4428940	4429124	1	-	2	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4428940	4429124	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4429125	4429204	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4429205	4429325	1	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4429205	4429325	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4429326	4429405	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4429406	4429462	1	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4429406	4429462	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4429463	4429547	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4429548	4429603	1	-	2	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4429548	4429603	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4429604	4429701	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4429702	4429762	1	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4429702	4429762	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4429763	4429910	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4429911	4430045	1	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4429911	4430045	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4430046	4430163	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4430164	4430196	0.67	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4430164	4430196	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4430197	4430315	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4430316	4430396	0.99	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4430316	4430396	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4430397	4430529	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4430530	4430625	1	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4430530	4430625	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4430626	4430704	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4430705	4430934	1	-	2	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4430705	4430934	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4430935	4431043	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4431044	4431230	0.99	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4431044	4431230	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4431231	4431380	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4431381	4431529	0.57	-	2	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4431381	4431529	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4431530	4431642	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4431643	4431865	0.92	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4431643	4431865	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4431866	4431955	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4431956	4431994	1	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4431956	4431994	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4431995	4432107	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4432108	4432573	1	-	1	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4432108	4432573	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4432574	4432662	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4432663	4432766	1	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4432663	4432766	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4432767	4432922	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4432923	4433018	0.65	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4432923	4433018	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4433019	4433104	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4433105	4433206	0.65	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4433105	4433206	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4433207	4433301	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4433302	4433371	0.6	-	1	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4433302	4433371	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4433372	4433530	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4433531	4433612	0.92	-	2	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4433531	4433612	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4433613	4433810	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4433811	4433908	0.97	-	1	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4433811	4433908	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4433909	4434046	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4434047	4434189	1	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4434047	4434189	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4434190	4434332	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4434333	4434449	1	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4434333	4434449	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4434450	4434544	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4434545	4434649	1	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4434545	4434649	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4434650	4434741	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4434742	4434788	1	-	2	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4434742	4434788	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4434789	4434917	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4434918	4435047	1	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4434918	4435047	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4435048	4435124	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4435125	4435256	1	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4435125	4435256	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4435257	4435342	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4435343	4435555	0.99	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4435343	4435555	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4435556	4435730	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4435731	4435988	0.92	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4435731	4435988	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4435989	4436116	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4436117	4436573	0.48	-	1	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4436117	4436573	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	intron	4436574	4436740	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	CDS	4436741	4437069	0.63	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	exon	4436741	4437069	.	-	.	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
Ledus.S1	AUGUSTUS	start_codon	4437067	4437069	.	-	0	transcript_id "Ledus.S1G031500.t1"; gene_id "Ledus.S1G031500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12905.t1 is derived from g4397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	199303	202540	.	+	.	Ledus.C9G001300
Ledus.C9	AUGUSTUS	transcript	199303	202540	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	start_codon	199303	199305	.	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	199303	199326	0.59	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	199303	199326	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	199327	199525	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	199526	199762	1	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	199526	199762	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	199763	199850	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	199851	199940	1	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	199851	199940	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	199941	200053	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	200054	200123	1	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	200054	200123	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	200124	200228	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	200229	200299	1	+	2	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	200229	200299	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	200300	200524	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	200525	200608	1	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	200525	200608	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	200609	200825	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	200826	200903	1	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	200826	200903	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	200904	201045	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	201046	201117	1	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	201046	201117	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	201118	201251	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	201252	201418	1	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	201252	201418	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	201419	201573	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	201574	201649	1	+	1	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	201574	201649	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	201650	201807	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	201808	201863	1	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	201808	201863	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	201864	202001	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	202002	202044	1	+	1	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	202002	202044	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	202045	202138	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	202139	202222	0.99	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	202139	202222	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	202223	202350	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	202351	202434	1	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	202351	202434	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	intron	202435	202534	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	CDS	202535	202540	1	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	exon	202535	202540	.	+	.	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
Ledus.C9	AUGUSTUS	stop_codon	202541	202543	.	+	0	transcript_id "Ledus.C9G001300.t1"; gene_id "Ledus.C9G001300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10166.t1 is derived from g11196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13428214	13429317	.	-	.	Ledus.S3G164300
Ledus.S3	AUGUSTUS	transcript	13428214	13429317	.	-	.	transcript_id "Ledus.S3G164300.t1"; gene_id "Ledus.S3G164300"
Ledus.S3	AUGUSTUS	stop_codon	13428211	13428213	.	-	0	transcript_id "Ledus.S3G164300.t1"; gene_id "Ledus.S3G164300"
Ledus.S3	AUGUSTUS	CDS	13428214	13429317	0.86	-	0	transcript_id "Ledus.S3G164300.t1"; gene_id "Ledus.S3G164300"
Ledus.S3	AUGUSTUS	exon	13428214	13429317	.	-	.	transcript_id "Ledus.S3G164300.t1"; gene_id "Ledus.S3G164300"
Ledus.S3	AUGUSTUS	start_codon	13429315	13429317	.	-	0	transcript_id "Ledus.S3G164300.t1"; gene_id "Ledus.S3G164300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1113.t1 is derived from g7974.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7599340	7607464	.	-	.	Ledus.S2G099500
Ledus.S2	AUGUSTUS	transcript	7599340	7607464	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	stop_codon	7599337	7599339	.	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7599340	7599630	1	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7599340	7599630	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7599631	7599714	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7599715	7599885	1	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7599715	7599885	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7599886	7600078	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7600079	7600159	1	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7600079	7600159	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7600160	7600358	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7600359	7600457	1	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7600359	7600457	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7600458	7600603	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7600604	7600712	0.96	-	1	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7600604	7600712	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7600713	7600814	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7600815	7600880	0.97	-	1	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7600815	7600880	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7600881	7600986	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7600987	7601111	0.78	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7600987	7601111	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7601112	7601222	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7601223	7601312	0.83	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7601223	7601312	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7601313	7601456	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7601457	7601631	1	-	1	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7601457	7601631	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7601632	7601773	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7601774	7601839	1	-	1	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7601774	7601839	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7601840	7601954	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7601955	7602067	1	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7601955	7602067	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7602068	7602154	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7602155	7602385	1	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7602155	7602385	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7602386	7602476	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7602477	7602524	1	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7602477	7602524	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7602525	7602761	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7602762	7602944	0.8	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7602762	7602944	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7602945	7603030	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7603031	7603135	0.34	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7603031	7603135	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7603136	7603361	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7603362	7603437	0.3	-	1	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7603362	7603437	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7603438	7603526	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7603527	7603597	1	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7603527	7603597	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7603598	7603684	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7603685	7603828	1	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7603685	7603828	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7603829	7603934	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7603935	7603991	0.95	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7603935	7603991	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7603992	7604094	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7604095	7604196	0.86	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7604095	7604196	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7604197	7604290	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7604291	7604388	0.89	-	2	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7604291	7604388	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7604389	7604497	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7604498	7604667	0.94	-	1	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7604498	7604667	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7604668	7604792	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7604793	7604824	1	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7604793	7604824	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7604825	7604909	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7604910	7605086	0.55	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7604910	7605086	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7605087	7605333	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7605334	7605347	0.63	-	2	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7605334	7605347	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7605348	7605523	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7605524	7605551	0.78	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7605524	7605551	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7605552	7605841	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7605842	7605859	0.67	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7605842	7605859	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7605860	7605947	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7605948	7606193	0.71	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7605948	7606193	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7606194	7606284	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7606285	7606499	1	-	2	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7606285	7606499	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7606500	7606612	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7606613	7606747	0.98	-	2	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7606613	7606747	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7606748	7606845	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7606846	7606918	0.97	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7606846	7606918	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7606919	7607034	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7607035	7607064	0.63	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7607035	7607064	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7607065	7607173	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7607174	7607282	0.92	-	1	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7607174	7607282	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	intron	7607283	7607372	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	CDS	7607373	7607464	0.87	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	exon	7607373	7607464	.	-	.	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
Ledus.S2	AUGUSTUS	start_codon	7607462	7607464	.	-	0	transcript_id "Ledus.S2G099500.t1"; gene_id "Ledus.S2G099500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10121.t1 is derived from g11151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12938271	12943043	.	+	.	Ledus.S3G159800
Ledus.S3	AUGUSTUS	transcript	12938271	12943043	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	start_codon	12938271	12938273	.	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12938271	12938495	1	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12938271	12938495	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12938496	12939026	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12939027	12939143	1	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12939027	12939143	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12939144	12939237	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12939238	12939288	1	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12939238	12939288	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12939289	12939422	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12939423	12939512	1	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12939423	12939512	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12939513	12939684	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12939685	12939831	1	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12939685	12939831	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12939832	12939952	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12939953	12940078	1	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12939953	12940078	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12940079	12940168	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12940169	12940246	1	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12940169	12940246	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12940247	12940341	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12940342	12941088	1	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12940342	12941088	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12941089	12941219	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12941220	12941372	1	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12941220	12941372	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12941373	12941585	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12941586	12941802	1	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12941586	12941802	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12941803	12941896	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12941897	12942051	1	+	2	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12941897	12942051	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12942052	12942140	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12942141	12942407	1	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12942141	12942407	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12942408	12942498	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12942499	12942618	1	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12942499	12942618	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12942619	12942691	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12942692	12942873	0.98	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12942692	12942873	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12942874	12942976	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12942977	12943043	0.98	+	1	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12942977	12943043	.	+	.	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	stop_codon	12943044	12943046	.	+	0	transcript_id "Ledus.S3G159800.t1"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	transcript	12938271	12939424	.	+	.	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	start_codon	12938271	12938273	.	+	0	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12938271	12938495	1	+	0	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12938271	12938495	.	+	.	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12938496	12939026	.	+	.	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12939027	12939143	1	+	0	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12939027	12939143	.	+	.	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12939144	12939237	.	+	.	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12939238	12939343	0.86	+	0	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12939238	12939343	.	+	.	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	intron	12939344	12939422	.	+	.	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	CDS	12939423	12939424	0.84	+	2	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	exon	12939423	12939424	.	+	.	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
Ledus.S3	AUGUSTUS	stop_codon	12939425	12939427	.	+	0	transcript_id "Ledus.S3G159800.t2"; gene_id "Ledus.S3G159800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1791.t1 is derived from g8654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12624879	12626249	.	-	.	Ledus.S2G167300
Ledus.S2	AUGUSTUS	transcript	12624879	12626249	.	-	.	transcript_id "Ledus.S2G167300.t1"; gene_id "Ledus.S2G167300"
Ledus.S2	AUGUSTUS	stop_codon	12624876	12624878	.	-	0	transcript_id "Ledus.S2G167300.t1"; gene_id "Ledus.S2G167300"
Ledus.S2	AUGUSTUS	CDS	12624879	12626249	0.93	-	0	transcript_id "Ledus.S2G167300.t1"; gene_id "Ledus.S2G167300"
Ledus.S2	AUGUSTUS	exon	12624879	12626249	.	-	.	transcript_id "Ledus.S2G167300.t1"; gene_id "Ledus.S2G167300"
Ledus.S2	AUGUSTUS	start_codon	12626247	12626249	.	-	0	transcript_id "Ledus.S2G167300.t1"; gene_id "Ledus.S2G167300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2320.t1 is derived from g9183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17153837	17154814	.	+	.	Ledus.S2G220200
Ledus.S2	AUGUSTUS	transcript	17153837	17154814	.	+	.	transcript_id "Ledus.S2G220200.t1"; gene_id "Ledus.S2G220200"
Ledus.S2	AUGUSTUS	start_codon	17153837	17153839	.	+	0	transcript_id "Ledus.S2G220200.t1"; gene_id "Ledus.S2G220200"
Ledus.S2	AUGUSTUS	CDS	17153837	17154814	0.98	+	0	transcript_id "Ledus.S2G220200.t1"; gene_id "Ledus.S2G220200"
Ledus.S2	AUGUSTUS	exon	17153837	17154814	.	+	.	transcript_id "Ledus.S2G220200.t1"; gene_id "Ledus.S2G220200"
Ledus.S2	AUGUSTUS	stop_codon	17154815	17154817	.	+	0	transcript_id "Ledus.S2G220200.t1"; gene_id "Ledus.S2G220200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3429.t1 is derived from g864.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8258156	8260244	.	-	.	Ledus.S1G085000
Ledus.S1	AUGUSTUS	transcript	8258156	8260244	.	-	.	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	stop_codon	8258153	8258155	.	-	0	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	CDS	8258156	8258163	0.94	-	2	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	exon	8258156	8258163	.	-	.	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	intron	8258164	8258244	.	-	.	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	CDS	8258245	8258307	1	-	2	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	exon	8258245	8258307	.	-	.	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	intron	8258308	8258458	.	-	.	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	CDS	8258459	8258758	1	-	2	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	exon	8258459	8258758	.	-	.	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	intron	8258759	8258912	.	-	.	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	CDS	8258913	8259567	0.7	-	0	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	exon	8258913	8259567	.	-	.	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	intron	8259568	8259742	.	-	.	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	CDS	8259743	8259853	0.98	-	0	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	exon	8259743	8259853	.	-	.	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	intron	8259854	8260049	.	-	.	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	CDS	8260050	8260244	0.75	-	0	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	exon	8260050	8260244	.	-	.	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
Ledus.S1	AUGUSTUS	start_codon	8260242	8260244	.	-	0	transcript_id "Ledus.S1G085000.t1"; gene_id "Ledus.S1G085000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4752.t1 is derived from g2190.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19613084	19614502	.	-	.	Ledus.S1G217300
Ledus.S1	AUGUSTUS	transcript	19613084	19614502	.	-	.	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	stop_codon	19613081	19613083	.	-	0	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	CDS	19613084	19613389	1	-	0	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	exon	19613084	19613389	.	-	.	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	intron	19613390	19613459	.	-	.	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	CDS	19613460	19613542	0.89	-	2	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	exon	19613460	19613542	.	-	.	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	intron	19613543	19613665	.	-	.	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	CDS	19613666	19613793	0.89	-	1	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	exon	19613666	19613793	.	-	.	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	intron	19613794	19613879	.	-	.	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	CDS	19613880	19614502	0.29	-	0	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	exon	19613880	19614502	.	-	.	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
Ledus.S1	AUGUSTUS	start_codon	19614500	19614502	.	-	0	transcript_id "Ledus.S1G217300.t1"; gene_id "Ledus.S1G217300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3108.t1 is derived from g543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5999524	6000090	.	+	.	Ledus.S1G052900
Ledus.S1	AUGUSTUS	transcript	5999524	6000090	.	+	.	transcript_id "Ledus.S1G052900.t1"; gene_id "Ledus.S1G052900"
Ledus.S1	AUGUSTUS	start_codon	5999524	5999526	.	+	0	transcript_id "Ledus.S1G052900.t1"; gene_id "Ledus.S1G052900"
Ledus.S1	AUGUSTUS	CDS	5999524	6000090	0.4	+	0	transcript_id "Ledus.S1G052900.t1"; gene_id "Ledus.S1G052900"
Ledus.S1	AUGUSTUS	exon	5999524	6000090	.	+	.	transcript_id "Ledus.S1G052900.t1"; gene_id "Ledus.S1G052900"
Ledus.S1	AUGUSTUS	stop_codon	6000091	6000093	.	+	0	transcript_id "Ledus.S1G052900.t1"; gene_id "Ledus.S1G052900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9852.t1 is derived from g10882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10557891	10566977	.	+	.	Ledus.S3G132900
Ledus.S3	AUGUSTUS	transcript	10557891	10566977	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	start_codon	10557891	10557893	.	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10557891	10558037	0.93	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10557891	10558037	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10558038	10559091	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10559092	10559157	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10559092	10559157	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10559158	10559329	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10559330	10559391	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10559330	10559391	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10559392	10559648	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10559649	10559730	1	+	1	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10559649	10559730	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10559731	10559945	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10559946	10560056	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10559946	10560056	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10560057	10560213	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10560214	10560291	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10560214	10560291	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10560292	10560413	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10560414	10560510	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10560414	10560510	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10560511	10560648	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10560649	10560755	1	+	2	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10560649	10560755	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10560756	10561222	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10561223	10561288	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10561223	10561288	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10561289	10561417	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10561418	10561539	0.98	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10561418	10561539	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10561540	10561650	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10561651	10561735	0.98	+	1	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10561651	10561735	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10561736	10561932	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10561933	10562010	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10561933	10562010	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10562011	10562120	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10562121	10562237	0.99	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10562121	10562237	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10562238	10562366	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10562367	10562516	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10562367	10562516	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10562517	10562600	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10562601	10562705	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10562601	10562705	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10562706	10563080	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10563081	10563223	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10563081	10563223	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10563224	10563320	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10563321	10563422	1	+	1	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10563321	10563422	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10563423	10563522	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10563523	10563586	1	+	1	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10563523	10563586	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10563587	10563709	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10563710	10563922	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10563710	10563922	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10563923	10564188	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10564189	10564354	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10564189	10564354	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10564355	10564720	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10564721	10564800	1	+	2	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10564721	10564800	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10564801	10564935	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10564936	10565175	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10564936	10565175	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10565176	10565320	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10565321	10565542	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10565321	10565542	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10565543	10565628	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10565629	10565796	1	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10565629	10565796	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10565797	10565935	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10565936	10566166	0.72	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10565936	10566166	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10566167	10566401	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10566402	10566508	0.93	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10566402	10566508	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10566509	10566619	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10566620	10566977	0.51	+	1	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10566620	10566977	.	+	.	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	stop_codon	10566978	10566980	.	+	0	transcript_id "Ledus.S3G132900.t1"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	transcript	10557891	10566977	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	start_codon	10557891	10557893	.	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10557891	10558037	0.95	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10557891	10558037	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10558038	10559085	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10559086	10559157	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10559086	10559157	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10559158	10559329	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10559330	10559391	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10559330	10559391	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10559392	10559648	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10559649	10559730	1	+	1	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10559649	10559730	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10559731	10559945	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10559946	10560056	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10559946	10560056	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10560057	10560213	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10560214	10560291	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10560214	10560291	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10560292	10560413	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10560414	10560510	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10560414	10560510	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10560511	10560648	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10560649	10560755	1	+	2	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10560649	10560755	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10560756	10561222	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10561223	10561288	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10561223	10561288	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10561289	10561417	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10561418	10561539	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10561418	10561539	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10561540	10561650	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10561651	10561735	1	+	1	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10561651	10561735	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10561736	10561932	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10561933	10562010	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10561933	10562010	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10562011	10562120	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10562121	10562237	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10562121	10562237	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10562238	10562366	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10562367	10562516	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10562367	10562516	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10562517	10562600	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10562601	10562705	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10562601	10562705	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10562706	10563080	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10563081	10563223	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10563081	10563223	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10563224	10563320	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10563321	10563422	1	+	1	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10563321	10563422	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10563423	10563522	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10563523	10563586	1	+	1	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10563523	10563586	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10563587	10563709	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10563710	10563922	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10563710	10563922	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10563923	10564188	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10564189	10564354	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10564189	10564354	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10564355	10564720	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10564721	10564800	1	+	2	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10564721	10564800	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10564801	10564935	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10564936	10565175	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10564936	10565175	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10565176	10565320	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10565321	10565542	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10565321	10565542	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10565543	10565628	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10565629	10565796	1	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10565629	10565796	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10565797	10565935	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10565936	10566166	0.73	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10565936	10566166	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10566167	10566401	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10566402	10566508	0.93	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10566402	10566508	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	intron	10566509	10566619	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	CDS	10566620	10566977	0.36	+	1	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	exon	10566620	10566977	.	+	.	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
Ledus.S3	AUGUSTUS	stop_codon	10566978	10566980	.	+	0	transcript_id "Ledus.S3G132900.t2"; gene_id "Ledus.S3G132900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg981.t1 is derived from g7842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6454920	6457210	.	-	.	Ledus.S2G086300
Ledus.S2	AUGUSTUS	transcript	6454920	6457210	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	stop_codon	6454917	6454919	.	-	0	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	CDS	6454920	6455201	1	-	0	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	exon	6454920	6455201	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	intron	6455202	6455288	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	CDS	6455289	6455510	1	-	0	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	exon	6455289	6455510	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	intron	6455511	6455593	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	CDS	6455594	6455710	1	-	0	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	exon	6455594	6455710	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	intron	6455711	6455802	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	CDS	6455803	6455905	1	-	1	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	exon	6455803	6455905	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	intron	6455906	6455978	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	CDS	6455979	6456141	1	-	2	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	exon	6455979	6456141	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	intron	6456142	6456216	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	CDS	6456217	6456466	1	-	0	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	exon	6456217	6456466	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	intron	6456467	6456549	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	CDS	6456550	6456932	1	-	2	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	exon	6456550	6456932	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	intron	6456933	6457014	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	CDS	6457015	6457210	0.97	-	0	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	exon	6457015	6457210	.	-	.	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
Ledus.S2	AUGUSTUS	start_codon	6457208	6457210	.	-	0	transcript_id "Ledus.S2G086300.t1"; gene_id "Ledus.S2G086300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4028.t1 is derived from g1464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14255800	14257238	.	-	.	Ledus.S1G144900
Ledus.S1	AUGUSTUS	transcript	14255800	14257238	.	-	.	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	stop_codon	14255797	14255799	.	-	0	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	CDS	14255800	14255947	1	-	1	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	exon	14255800	14255947	.	-	.	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	intron	14255948	14256025	.	-	.	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	CDS	14256026	14256261	1	-	0	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	exon	14256026	14256261	.	-	.	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	intron	14256262	14256355	.	-	.	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	CDS	14256356	14256562	1	-	0	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	exon	14256356	14256562	.	-	.	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	intron	14256563	14256656	.	-	.	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	CDS	14256657	14257238	0.99	-	0	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	exon	14256657	14257238	.	-	.	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
Ledus.S1	AUGUSTUS	start_codon	14257236	14257238	.	-	0	transcript_id "Ledus.S1G144900.t1"; gene_id "Ledus.S1G144900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4775.t1 is derived from g2213.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19690198	19691581	.	-	.	Ledus.S1G219600
Ledus.S1	AUGUSTUS	transcript	19690198	19691581	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	stop_codon	19690195	19690197	.	-	0	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	CDS	19690198	19690308	1	-	0	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	exon	19690198	19690308	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	intron	19690309	19690413	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	CDS	19690414	19690455	1	-	0	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	exon	19690414	19690455	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	intron	19690456	19690544	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	CDS	19690545	19690607	1	-	0	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	exon	19690545	19690607	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	intron	19690608	19690698	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	CDS	19690699	19690905	1	-	0	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	exon	19690699	19690905	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	intron	19690906	19691002	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	CDS	19691003	19691116	1	-	0	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	exon	19691003	19691116	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	intron	19691117	19691198	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	CDS	19691199	19691267	1	-	0	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	exon	19691199	19691267	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	intron	19691268	19691339	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	CDS	19691340	19691430	1	-	1	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	exon	19691340	19691430	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	intron	19691431	19691519	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	CDS	19691520	19691581	0.97	-	0	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	exon	19691520	19691581	.	-	.	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
Ledus.S1	AUGUSTUS	start_codon	19691579	19691581	.	-	0	transcript_id "Ledus.S1G219600.t1"; gene_id "Ledus.S1G219600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12290.t1 is derived from g5910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10919831	10920609	.	+	.	Ledus.S4G144600
Ledus.S4	AUGUSTUS	transcript	10919831	10920609	.	+	.	transcript_id "Ledus.S4G144600.t1"; gene_id "Ledus.S4G144600"
Ledus.S4	AUGUSTUS	start_codon	10919831	10919833	.	+	0	transcript_id "Ledus.S4G144600.t1"; gene_id "Ledus.S4G144600"
Ledus.S4	AUGUSTUS	CDS	10919831	10920032	0.42	+	0	transcript_id "Ledus.S4G144600.t1"; gene_id "Ledus.S4G144600"
Ledus.S4	AUGUSTUS	exon	10919831	10920032	.	+	.	transcript_id "Ledus.S4G144600.t1"; gene_id "Ledus.S4G144600"
Ledus.S4	AUGUSTUS	intron	10920033	10920124	.	+	.	transcript_id "Ledus.S4G144600.t1"; gene_id "Ledus.S4G144600"
Ledus.S4	AUGUSTUS	CDS	10920125	10920609	0.65	+	2	transcript_id "Ledus.S4G144600.t1"; gene_id "Ledus.S4G144600"
Ledus.S4	AUGUSTUS	exon	10920125	10920609	.	+	.	transcript_id "Ledus.S4G144600.t1"; gene_id "Ledus.S4G144600"
Ledus.S4	AUGUSTUS	stop_codon	10920610	10920612	.	+	0	transcript_id "Ledus.S4G144600.t1"; gene_id "Ledus.S4G144600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4546.t1 is derived from g1983.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17613231	17614304	.	-	.	Ledus.S1G196700
Ledus.S1	AUGUSTUS	transcript	17613231	17614304	.	-	.	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	stop_codon	17613228	17613230	.	-	0	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	CDS	17613231	17613452	1	-	0	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	exon	17613231	17613452	.	-	.	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	intron	17613453	17613540	.	-	.	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	CDS	17613541	17613812	0.87	-	2	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	exon	17613541	17613812	.	-	.	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	intron	17613813	17613919	.	-	.	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	CDS	17613920	17613952	0.87	-	2	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	exon	17613920	17613952	.	-	.	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	intron	17613953	17614045	.	-	.	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	CDS	17614046	17614304	0.86	-	0	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	exon	17614046	17614304	.	-	.	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
Ledus.S1	AUGUSTUS	start_codon	17614302	17614304	.	-	0	transcript_id "Ledus.S1G196700.t1"; gene_id "Ledus.S1G196700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8272.t1 is derived from g12943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10339943	10341553	.	-	.	Ledus.S5G105000
Ledus.S5	AUGUSTUS	transcript	10339943	10341553	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	stop_codon	10339940	10339942	.	-	0	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	CDS	10339943	10339996	1	-	0	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	exon	10339943	10339996	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	intron	10339997	10340098	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	CDS	10340099	10340168	0.99	-	1	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	exon	10340099	10340168	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	intron	10340169	10340266	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	CDS	10340267	10340389	0.41	-	1	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	exon	10340267	10340389	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	intron	10340390	10340477	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	CDS	10340478	10340548	0.41	-	0	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	exon	10340478	10340548	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	intron	10340549	10340630	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	CDS	10340631	10340672	1	-	0	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	exon	10340631	10340672	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	intron	10340673	10340801	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	CDS	10340802	10340863	1	-	2	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	exon	10340802	10340863	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	intron	10340864	10340945	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	CDS	10340946	10341064	1	-	1	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	exon	10340946	10341064	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	intron	10341065	10341148	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	CDS	10341149	10341300	1	-	0	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	exon	10341149	10341300	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	intron	10341301	10341415	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	CDS	10341416	10341553	0.96	-	0	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	exon	10341416	10341553	.	-	.	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
Ledus.S5	AUGUSTUS	start_codon	10341551	10341553	.	-	0	transcript_id "Ledus.S5G105000.t1"; gene_id "Ledus.S5G105000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3210.t1 is derived from g645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6835503	6835766	.	+	.	Ledus.S1G063100
Ledus.S1	AUGUSTUS	transcript	6835503	6835766	.	+	.	transcript_id "Ledus.S1G063100.t1"; gene_id "Ledus.S1G063100"
Ledus.S1	AUGUSTUS	start_codon	6835503	6835505	.	+	0	transcript_id "Ledus.S1G063100.t1"; gene_id "Ledus.S1G063100"
Ledus.S1	AUGUSTUS	CDS	6835503	6835766	0.9	+	0	transcript_id "Ledus.S1G063100.t1"; gene_id "Ledus.S1G063100"
Ledus.S1	AUGUSTUS	exon	6835503	6835766	.	+	.	transcript_id "Ledus.S1G063100.t1"; gene_id "Ledus.S1G063100"
Ledus.S1	AUGUSTUS	stop_codon	6835767	6835769	.	+	0	transcript_id "Ledus.S1G063100.t1"; gene_id "Ledus.S1G063100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg10696.t1 is derived from g11726.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17180171	17181177	.	-	.	Ledus.S3G217300
Ledus.S3	AUGUSTUS	transcript	17180171	17181177	.	-	.	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	stop_codon	17180168	17180170	.	-	0	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17180171	17180315	1	-	1	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17180171	17180315	.	-	.	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	intron	17180316	17180460	.	-	.	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17180461	17180574	1	-	1	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17180461	17180574	.	-	.	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	intron	17180575	17180653	.	-	.	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17180654	17180800	1	-	1	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17180654	17180800	.	-	.	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	intron	17180801	17180895	.	-	.	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17180896	17180948	1	-	0	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17180896	17180948	.	-	.	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	intron	17180949	17181093	.	-	.	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17181094	17181177	1	-	0	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17181094	17181177	.	-	.	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	start_codon	17181175	17181177	.	-	0	transcript_id "Ledus.S3G217300.t1"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	transcript	17180171	17181177	.	-	.	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	stop_codon	17180168	17180170	.	-	0	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17180171	17180315	1	-	1	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17180171	17180315	.	-	.	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	intron	17180316	17180460	.	-	.	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17180461	17180571	1	-	1	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17180461	17180571	.	-	.	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	intron	17180572	17180653	.	-	.	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17180654	17180800	1	-	1	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17180654	17180800	.	-	.	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	intron	17180801	17180895	.	-	.	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17180896	17180948	1	-	0	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17180896	17180948	.	-	.	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	intron	17180949	17181093	.	-	.	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17181094	17181177	1	-	0	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17181094	17181177	.	-	.	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	start_codon	17181175	17181177	.	-	0	transcript_id "Ledus.S3G217300.t2"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	transcript	17180171	17181177	.	-	.	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	stop_codon	17180168	17180170	.	-	0	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17180171	17180315	1	-	1	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17180171	17180315	.	-	.	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	intron	17180316	17180460	.	-	.	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17180461	17180568	1	-	1	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17180461	17180568	.	-	.	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	intron	17180569	17180653	.	-	.	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17180654	17180800	1	-	1	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17180654	17180800	.	-	.	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	intron	17180801	17180895	.	-	.	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17180896	17180948	1	-	0	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17180896	17180948	.	-	.	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	intron	17180949	17181093	.	-	.	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	CDS	17181094	17181177	1	-	0	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	exon	17181094	17181177	.	-	.	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
Ledus.S3	AUGUSTUS	start_codon	17181175	17181177	.	-	0	transcript_id "Ledus.S3G217300.t3"; gene_id "Ledus.S3G217300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13157.t1 is derived from g6967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7631325	7636257	.	-	.	Ledus.S6G021900
Ledus.S6	AUGUSTUS	transcript	7631325	7636257	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	stop_codon	7631322	7631324	.	-	0	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	CDS	7631325	7631568	0.94	-	1	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	exon	7631325	7631568	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	intron	7631569	7631763	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	CDS	7631764	7632261	0.48	-	1	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	exon	7631764	7632261	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	intron	7632262	7632445	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	CDS	7632446	7632474	0.24	-	0	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	exon	7632446	7632474	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	intron	7632475	7632814	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	CDS	7632815	7633078	0.39	-	0	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	exon	7632815	7633078	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	intron	7633079	7633547	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	CDS	7633548	7633646	1	-	0	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	exon	7633548	7633646	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	intron	7633647	7633852	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	CDS	7633853	7634082	1	-	2	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	exon	7633853	7634082	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	intron	7634083	7634297	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	CDS	7634298	7634349	1	-	0	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	exon	7634298	7634349	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	intron	7634350	7634647	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	CDS	7634648	7634834	1	-	1	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	exon	7634648	7634834	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	intron	7634835	7635055	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	CDS	7635056	7635265	1	-	1	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	exon	7635056	7635265	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	intron	7635266	7635507	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	CDS	7635508	7635674	1	-	0	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	exon	7635508	7635674	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	intron	7635675	7635790	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	CDS	7635791	7636027	1	-	0	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	exon	7635791	7636027	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	intron	7636028	7636155	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	CDS	7636156	7636257	0.47	-	0	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	exon	7636156	7636257	.	-	.	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
Ledus.S6	AUGUSTUS	start_codon	7636255	7636257	.	-	0	transcript_id "Ledus.S6G021900.t1"; gene_id "Ledus.S6G021900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8369.t1 is derived from g13041.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11189753	11190031	.	+	.	Ledus.S5G114700
Ledus.S5	AUGUSTUS	transcript	11189753	11190031	.	+	.	transcript_id "Ledus.S5G114700.t1"; gene_id "Ledus.S5G114700"
Ledus.S5	AUGUSTUS	start_codon	11189753	11189755	.	+	0	transcript_id "Ledus.S5G114700.t1"; gene_id "Ledus.S5G114700"
Ledus.S5	AUGUSTUS	CDS	11189753	11190031	0.48	+	0	transcript_id "Ledus.S5G114700.t1"; gene_id "Ledus.S5G114700"
Ledus.S5	AUGUSTUS	exon	11189753	11190031	.	+	.	transcript_id "Ledus.S5G114700.t1"; gene_id "Ledus.S5G114700"
Ledus.S5	AUGUSTUS	stop_codon	11190032	11190034	.	+	0	transcript_id "Ledus.S5G114700.t1"; gene_id "Ledus.S5G114700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8424.t1 is derived from g13096.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11566390	11568831	.	+	.	Ledus.S5G120200
Ledus.S5	AUGUSTUS	transcript	11566390	11567096	.	+	.	transcript_id "Ledus.S5G120200.t1"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	start_codon	11566390	11566392	.	+	0	transcript_id "Ledus.S5G120200.t1"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	CDS	11566390	11567029	0.82	+	0	transcript_id "Ledus.S5G120200.t1"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	exon	11566390	11567029	.	+	.	transcript_id "Ledus.S5G120200.t1"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	intron	11567030	11567091	.	+	.	transcript_id "Ledus.S5G120200.t1"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	CDS	11567092	11567096	0.88	+	2	transcript_id "Ledus.S5G120200.t1"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	exon	11567092	11567096	.	+	.	transcript_id "Ledus.S5G120200.t1"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	stop_codon	11567097	11567099	.	+	0	transcript_id "Ledus.S5G120200.t1"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	transcript	11566390	11568831	.	+	.	transcript_id "Ledus.S5G120200.t2"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	start_codon	11566390	11566392	.	+	0	transcript_id "Ledus.S5G120200.t2"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	CDS	11566390	11568831	0.78	+	0	transcript_id "Ledus.S5G120200.t2"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	exon	11566390	11568831	.	+	.	transcript_id "Ledus.S5G120200.t2"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	stop_codon	11568832	11568834	.	+	0	transcript_id "Ledus.S5G120200.t2"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	transcript	11566630	11568831	.	+	.	transcript_id "Ledus.S5G120200.t3"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	start_codon	11566630	11566632	.	+	0	transcript_id "Ledus.S5G120200.t3"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	CDS	11566630	11568831	0.23	+	0	transcript_id "Ledus.S5G120200.t3"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	exon	11566630	11568831	.	+	.	transcript_id "Ledus.S5G120200.t3"; gene_id "Ledus.S5G120200"
Ledus.S5	AUGUSTUS	stop_codon	11568832	11568834	.	+	0	transcript_id "Ledus.S5G120200.t3"; gene_id "Ledus.S5G120200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11218.t1 is derived from g4836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2788331	2788975	.	+	.	Ledus.S4G037400
Ledus.S4	AUGUSTUS	transcript	2788331	2788975	.	+	.	transcript_id "Ledus.S4G037400.t1"; gene_id "Ledus.S4G037400"
Ledus.S4	AUGUSTUS	start_codon	2788331	2788333	.	+	0	transcript_id "Ledus.S4G037400.t1"; gene_id "Ledus.S4G037400"
Ledus.S4	AUGUSTUS	CDS	2788331	2788975	0.55	+	0	transcript_id "Ledus.S4G037400.t1"; gene_id "Ledus.S4G037400"
Ledus.S4	AUGUSTUS	exon	2788331	2788975	.	+	.	transcript_id "Ledus.S4G037400.t1"; gene_id "Ledus.S4G037400"
Ledus.S4	AUGUSTUS	stop_codon	2788976	2788978	.	+	0	transcript_id "Ledus.S4G037400.t1"; gene_id "Ledus.S4G037400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg911.t1 is derived from g7772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6142368	6146294	.	-	.	Ledus.S2G079300
Ledus.S2	AUGUSTUS	transcript	6142368	6146294	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	stop_codon	6142365	6142367	.	-	0	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6142368	6142465	0.83	-	2	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6142368	6142465	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6142466	6142643	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6142644	6142650	0.99	-	0	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6142644	6142650	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6142651	6142736	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6142737	6142958	0.97	-	0	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6142737	6142958	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6142959	6143429	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6143430	6143596	1	-	2	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6143430	6143596	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6143597	6143715	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6143716	6143773	1	-	0	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6143716	6143773	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6143774	6143938	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6143939	6144021	1	-	2	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6143939	6144021	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6144022	6144218	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6144219	6144345	0.78	-	0	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6144219	6144345	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6144346	6144449	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6144450	6144534	0.78	-	1	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6144450	6144534	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6144535	6144626	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6144627	6144690	1	-	2	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6144627	6144690	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6144691	6144810	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6144811	6144872	1	-	1	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6144811	6144872	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6144873	6144966	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6144967	6145037	1	-	0	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6144967	6145037	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6145038	6145153	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6145154	6145249	1	-	0	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6145154	6145249	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6145250	6145346	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6145347	6145495	1	-	2	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6145347	6145495	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6145496	6145584	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6145585	6145654	1	-	0	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6145585	6145654	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6145655	6145975	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6145976	6146016	1	-	2	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6145976	6146016	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	intron	6146017	6146218	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	CDS	6146219	6146294	0.22	-	0	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	exon	6146219	6146294	.	-	.	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
Ledus.S2	AUGUSTUS	start_codon	6146292	6146294	.	-	0	transcript_id "Ledus.S2G079300.t1"; gene_id "Ledus.S2G079300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13116.t1 is derived from g6926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6188589	6188825	.	+	.	Ledus.S6G017800
Ledus.S6	AUGUSTUS	transcript	6188589	6188825	.	+	.	transcript_id "Ledus.S6G017800.t1"; gene_id "Ledus.S6G017800"
Ledus.S6	AUGUSTUS	start_codon	6188589	6188591	.	+	0	transcript_id "Ledus.S6G017800.t1"; gene_id "Ledus.S6G017800"
Ledus.S6	AUGUSTUS	CDS	6188589	6188825	0.41	+	0	transcript_id "Ledus.S6G017800.t1"; gene_id "Ledus.S6G017800"
Ledus.S6	AUGUSTUS	exon	6188589	6188825	.	+	.	transcript_id "Ledus.S6G017800.t1"; gene_id "Ledus.S6G017800"
Ledus.S6	AUGUSTUS	stop_codon	6188826	6188828	.	+	0	transcript_id "Ledus.S6G017800.t1"; gene_id "Ledus.S6G017800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10035.t1 is derived from g11065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12096878	12104001	.	-	.	Ledus.S3G151200
Ledus.S3	AUGUSTUS	transcript	12096878	12104001	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	stop_codon	12096875	12096877	.	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12096878	12097104	0.8	-	2	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12096878	12097104	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12097105	12097440	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12097441	12097532	0.84	-	1	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12097441	12097532	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12097533	12097669	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12097670	12097737	1	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12097670	12097737	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12097738	12097906	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12097907	12097972	1	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12097907	12097972	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12097973	12098094	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12098095	12098163	1	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12098095	12098163	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12098164	12098312	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12098313	12098566	1	-	2	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12098313	12098566	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12098567	12098777	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12098778	12098877	1	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12098778	12098877	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12098878	12099009	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12099010	12099054	1	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12099010	12099054	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12099055	12099193	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12099194	12099309	1	-	2	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12099194	12099309	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12099310	12099401	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12099402	12099465	1	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12099402	12099465	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12099466	12099711	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12099712	12100329	1	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12099712	12100329	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12100330	12100423	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12100424	12100528	1	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12100424	12100528	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12100529	12100660	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12100661	12100766	1	-	1	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12100661	12100766	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12100767	12100866	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12100867	12100940	1	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12100867	12100940	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12100941	12101040	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12101041	12101198	1	-	2	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12101041	12101198	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12101199	12101340	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12101341	12101551	1	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12101341	12101551	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12101552	12101643	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12101644	12102132	1	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12101644	12102132	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12102133	12102286	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12102287	12102630	0.88	-	2	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12102287	12102630	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12102631	12102874	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12102875	12102961	1	-	2	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12102875	12102961	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	intron	12102962	12103940	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	CDS	12103941	12104001	1	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	exon	12103941	12104001	.	-	.	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
Ledus.S3	AUGUSTUS	start_codon	12103999	12104001	.	-	0	transcript_id "Ledus.S3G151200.t1"; gene_id "Ledus.S3G151200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8873.t1 is derived from g9903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2706528	2706806	.	-	.	Ledus.S3G035000
Ledus.S3	AUGUSTUS	transcript	2706528	2706806	.	-	.	transcript_id "Ledus.S3G035000.t1"; gene_id "Ledus.S3G035000"
Ledus.S3	AUGUSTUS	stop_codon	2706525	2706527	.	-	0	transcript_id "Ledus.S3G035000.t1"; gene_id "Ledus.S3G035000"
Ledus.S3	AUGUSTUS	CDS	2706528	2706806	0.9	-	0	transcript_id "Ledus.S3G035000.t1"; gene_id "Ledus.S3G035000"
Ledus.S3	AUGUSTUS	exon	2706528	2706806	.	-	.	transcript_id "Ledus.S3G035000.t1"; gene_id "Ledus.S3G035000"
Ledus.S3	AUGUSTUS	start_codon	2706804	2706806	.	-	0	transcript_id "Ledus.S3G035000.t1"; gene_id "Ledus.S3G035000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg797.t1 is derived from g7658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5144117	5145916	.	-	.	Ledus.S2G067900
Ledus.S2	AUGUSTUS	transcript	5144117	5145916	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	stop_codon	5144114	5144116	.	-	0	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	CDS	5144117	5144404	0.94	-	0	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	exon	5144117	5144404	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	intron	5144405	5144487	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	CDS	5144488	5144763	0.88	-	0	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	exon	5144488	5144763	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	intron	5144764	5144834	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	CDS	5144835	5145045	0.99	-	1	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	exon	5144835	5145045	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	intron	5145046	5145115	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	CDS	5145116	5145213	1	-	0	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	exon	5145116	5145213	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	intron	5145214	5145298	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	CDS	5145299	5145488	0.93	-	1	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	exon	5145299	5145488	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	intron	5145489	5145560	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	CDS	5145561	5145652	0.82	-	0	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	exon	5145561	5145652	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	intron	5145653	5145751	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	CDS	5145752	5145916	0.59	-	0	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	exon	5145752	5145916	.	-	.	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
Ledus.S2	AUGUSTUS	start_codon	5145914	5145916	.	-	0	transcript_id "Ledus.S2G067900.t1"; gene_id "Ledus.S2G067900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8032.t1 is derived from g12703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8594148	8597286	.	-	.	Ledus.S5G081000
Ledus.S5	AUGUSTUS	transcript	8594148	8597286	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	stop_codon	8594145	8594147	.	-	0	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8594148	8594255	0.97	-	0	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8594148	8594255	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8594256	8594340	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8594341	8594438	1	-	2	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8594341	8594438	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8594439	8594533	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8594534	8594585	1	-	0	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8594534	8594585	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8594586	8594704	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8594705	8594816	1	-	1	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8594705	8594816	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8594817	8594909	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8594910	8594998	1	-	0	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8594910	8594998	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8594999	8595092	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8595093	8595158	1	-	0	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8595093	8595158	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8595159	8595280	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8595281	8595470	1	-	1	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8595281	8595470	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8595471	8595552	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8595553	8595782	1	-	0	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8595553	8595782	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8595783	8595857	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8595858	8595938	1	-	0	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8595858	8595938	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8595939	8596114	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8596115	8596185	1	-	2	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8596115	8596185	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8596186	8596349	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8596350	8596451	1	-	2	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8596350	8596451	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8596452	8596541	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8596542	8596678	0.99	-	1	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8596542	8596678	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8596679	8596753	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8596754	8596769	0.99	-	2	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8596754	8596769	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8596770	8596860	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8596861	8596964	1	-	1	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8596861	8596964	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8596965	8597050	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8597051	8597286	0.79	-	0	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8597051	8597286	.	-	.	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	start_codon	8597284	8597286	.	-	0	transcript_id "Ledus.S5G081000.t1"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	transcript	8594148	8597286	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	stop_codon	8594145	8594147	.	-	0	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8594148	8594255	0.98	-	0	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8594148	8594255	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8594256	8594340	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8594341	8594438	1	-	2	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8594341	8594438	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8594439	8594533	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8594534	8594585	1	-	0	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8594534	8594585	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8594586	8594704	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8594705	8594816	1	-	1	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8594705	8594816	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8594817	8594909	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8594910	8594998	1	-	0	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8594910	8594998	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8594999	8595092	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8595093	8595158	0.98	-	0	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8595093	8595158	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8595159	8595280	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8595281	8595470	0.98	-	1	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8595281	8595470	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8595471	8595552	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8595553	8595782	1	-	0	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8595553	8595782	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8595783	8595857	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8595858	8595938	1	-	0	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8595858	8595938	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8595939	8596114	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8596115	8596185	1	-	2	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8596115	8596185	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8596186	8596349	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8596350	8596451	1	-	2	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8596350	8596451	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8596452	8596526	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8596527	8596678	0.99	-	1	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8596527	8596678	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8596679	8596753	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8596754	8596769	1	-	2	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8596754	8596769	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8596770	8596860	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8596861	8596964	1	-	1	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8596861	8596964	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	intron	8596965	8597050	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	CDS	8597051	8597286	0.76	-	0	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	exon	8597051	8597286	.	-	.	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
Ledus.S5	AUGUSTUS	start_codon	8597284	8597286	.	-	0	transcript_id "Ledus.S5G081000.t2"; gene_id "Ledus.S5G081000"
# This transcript jg3611.t2 is derived from g1047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3612.t1 is derived from g1048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10207668	10208379	.	+	.	Ledus.S1G103300
Ledus.S1	AUGUSTUS	transcript	10207668	10208379	.	+	.	transcript_id "Ledus.S1G103300.t1"; gene_id "Ledus.S1G103300"
Ledus.S1	AUGUSTUS	start_codon	10207668	10207670	.	+	0	transcript_id "Ledus.S1G103300.t1"; gene_id "Ledus.S1G103300"
Ledus.S1	AUGUSTUS	CDS	10207668	10207828	0.34	+	0	transcript_id "Ledus.S1G103300.t1"; gene_id "Ledus.S1G103300"
Ledus.S1	AUGUSTUS	exon	10207668	10207828	.	+	.	transcript_id "Ledus.S1G103300.t1"; gene_id "Ledus.S1G103300"
Ledus.S1	AUGUSTUS	intron	10207829	10207907	.	+	.	transcript_id "Ledus.S1G103300.t1"; gene_id "Ledus.S1G103300"
Ledus.S1	AUGUSTUS	CDS	10207908	10208379	1	+	1	transcript_id "Ledus.S1G103300.t1"; gene_id "Ledus.S1G103300"
Ledus.S1	AUGUSTUS	exon	10207908	10208379	.	+	.	transcript_id "Ledus.S1G103300.t1"; gene_id "Ledus.S1G103300"
Ledus.S1	AUGUSTUS	stop_codon	10208380	10208382	.	+	0	transcript_id "Ledus.S1G103300.t1"; gene_id "Ledus.S1G103300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4672.t1 is derived from g2110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18921867	18923778	.	+	.	Ledus.S1G209300
Ledus.S1	AUGUSTUS	transcript	18921867	18923778	.	+	.	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	start_codon	18921867	18921869	.	+	0	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	CDS	18921867	18922260	0.63	+	0	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	exon	18921867	18922260	.	+	.	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	intron	18922261	18922379	.	+	.	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	CDS	18922380	18922708	0.99	+	2	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	exon	18922380	18922708	.	+	.	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	intron	18922709	18922799	.	+	.	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	CDS	18922800	18923015	1	+	0	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	exon	18922800	18923015	.	+	.	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	intron	18923016	18923103	.	+	.	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	CDS	18923104	18923778	0.99	+	0	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	exon	18923104	18923778	.	+	.	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
Ledus.S1	AUGUSTUS	stop_codon	18923779	18923781	.	+	0	transcript_id "Ledus.S1G209300.t1"; gene_id "Ledus.S1G209300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4438.t1 is derived from g1874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17122556	17124040	.	+	.	Ledus.S1G185900
Ledus.S1	AUGUSTUS	transcript	17122556	17124040	.	+	.	transcript_id "Ledus.S1G185900.t1"; gene_id "Ledus.S1G185900"
Ledus.S1	AUGUSTUS	start_codon	17122556	17122558	.	+	0	transcript_id "Ledus.S1G185900.t1"; gene_id "Ledus.S1G185900"
Ledus.S1	AUGUSTUS	CDS	17122556	17124040	0.47	+	0	transcript_id "Ledus.S1G185900.t1"; gene_id "Ledus.S1G185900"
Ledus.S1	AUGUSTUS	exon	17122556	17124040	.	+	.	transcript_id "Ledus.S1G185900.t1"; gene_id "Ledus.S1G185900"
Ledus.S1	AUGUSTUS	stop_codon	17124041	17124043	.	+	0	transcript_id "Ledus.S1G185900.t1"; gene_id "Ledus.S1G185900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5297.t1 is derived from g2736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22972785	22973084	.	-	.	Ledus.S1G271800
Ledus.S1	AUGUSTUS	transcript	22972785	22973084	.	-	.	transcript_id "Ledus.S1G271800.t1"; gene_id "Ledus.S1G271800"
Ledus.S1	AUGUSTUS	stop_codon	22972782	22972784	.	-	0	transcript_id "Ledus.S1G271800.t1"; gene_id "Ledus.S1G271800"
Ledus.S1	AUGUSTUS	CDS	22972785	22973084	0.99	-	0	transcript_id "Ledus.S1G271800.t1"; gene_id "Ledus.S1G271800"
Ledus.S1	AUGUSTUS	exon	22972785	22973084	.	-	.	transcript_id "Ledus.S1G271800.t1"; gene_id "Ledus.S1G271800"
Ledus.S1	AUGUSTUS	start_codon	22973082	22973084	.	-	0	transcript_id "Ledus.S1G271800.t1"; gene_id "Ledus.S1G271800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8936.t1 is derived from g9966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3315595	3317659	.	+	.	Ledus.S3G041300
Ledus.S3	AUGUSTUS	transcript	3315595	3317659	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	start_codon	3315595	3315597	.	+	0	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	CDS	3315595	3315597	1	+	0	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	exon	3315595	3315597	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	intron	3315598	3316326	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	CDS	3316327	3316399	1	+	0	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	exon	3316327	3316399	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	intron	3316400	3316503	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	CDS	3316504	3316560	1	+	2	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	exon	3316504	3316560	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	intron	3316561	3316641	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	CDS	3316642	3316759	1	+	2	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	exon	3316642	3316759	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	intron	3316760	3316900	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	CDS	3316901	3316990	1	+	1	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	exon	3316901	3316990	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	intron	3316991	3317120	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	CDS	3317121	3317300	1	+	1	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	exon	3317121	3317300	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	intron	3317301	3317401	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	CDS	3317402	3317479	1	+	1	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	exon	3317402	3317479	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	intron	3317480	3317589	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	CDS	3317590	3317659	1	+	1	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	exon	3317590	3317659	.	+	.	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
Ledus.S3	AUGUSTUS	stop_codon	3317660	3317662	.	+	0	transcript_id "Ledus.S3G041300.t1"; gene_id "Ledus.S3G041300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9275.t1 is derived from g10305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5747959	5748458	.	-	.	Ledus.S3G075200
Ledus.S3	AUGUSTUS	transcript	5747959	5748458	.	-	.	transcript_id "Ledus.S3G075200.t1"; gene_id "Ledus.S3G075200"
Ledus.S3	AUGUSTUS	stop_codon	5747956	5747958	.	-	0	transcript_id "Ledus.S3G075200.t1"; gene_id "Ledus.S3G075200"
Ledus.S3	AUGUSTUS	CDS	5747959	5748181	0.95	-	1	transcript_id "Ledus.S3G075200.t1"; gene_id "Ledus.S3G075200"
Ledus.S3	AUGUSTUS	exon	5747959	5748181	.	-	.	transcript_id "Ledus.S3G075200.t1"; gene_id "Ledus.S3G075200"
Ledus.S3	AUGUSTUS	intron	5748182	5748279	.	-	.	transcript_id "Ledus.S3G075200.t1"; gene_id "Ledus.S3G075200"
Ledus.S3	AUGUSTUS	CDS	5748280	5748458	0.98	-	0	transcript_id "Ledus.S3G075200.t1"; gene_id "Ledus.S3G075200"
Ledus.S3	AUGUSTUS	exon	5748280	5748458	.	-	.	transcript_id "Ledus.S3G075200.t1"; gene_id "Ledus.S3G075200"
Ledus.S3	AUGUSTUS	start_codon	5748456	5748458	.	-	0	transcript_id "Ledus.S3G075200.t1"; gene_id "Ledus.S3G075200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7042.t1 is derived from g6573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	981471	984537	.	+	.	Ledus.C7G010300
Ledus.C7	AUGUSTUS	transcript	981471	984537	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	start_codon	981471	981473	.	+	0	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	CDS	981471	981568	0.53	+	0	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	exon	981471	981568	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	intron	981569	981645	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	CDS	981646	981653	0.49	+	1	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	exon	981646	981653	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	intron	981654	981877	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	CDS	981878	981938	0.52	+	2	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	exon	981878	981938	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	intron	981939	982085	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	CDS	982086	982146	1	+	1	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	exon	982086	982146	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	intron	982147	982447	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	CDS	982448	982682	1	+	0	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	exon	982448	982682	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	intron	982683	982830	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	CDS	982831	983069	0.89	+	2	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	exon	982831	983069	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	intron	983070	983433	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	CDS	983434	983655	0.89	+	0	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	exon	983434	983655	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	intron	983656	983788	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	CDS	983789	983969	0.97	+	0	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	exon	983789	983969	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	intron	983970	984072	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	CDS	984073	984161	0.98	+	2	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	exon	984073	984161	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	intron	984162	984264	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	CDS	984265	984338	0.98	+	0	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	exon	984265	984338	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	intron	984339	984461	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	CDS	984462	984537	1	+	1	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	exon	984462	984537	.	+	.	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
Ledus.C7	AUGUSTUS	stop_codon	984538	984540	.	+	0	transcript_id "Ledus.C7G010300.t1"; gene_id "Ledus.C7G010300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5609.t1 is derived from g3048.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25357397	25359334	.	+	.	Ledus.S1G303000
Ledus.S1	AUGUSTUS	transcript	25357397	25359334	.	+	.	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	start_codon	25357397	25357399	.	+	0	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	CDS	25357397	25357914	0.44	+	0	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	exon	25357397	25357914	.	+	.	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	intron	25357915	25358016	.	+	.	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	CDS	25358017	25358167	0.93	+	1	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	exon	25358017	25358167	.	+	.	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	intron	25358168	25358258	.	+	.	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	CDS	25358259	25358408	1	+	0	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	exon	25358259	25358408	.	+	.	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	intron	25358409	25358497	.	+	.	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	CDS	25358498	25358629	1	+	0	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	exon	25358498	25358629	.	+	.	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	intron	25358630	25358720	.	+	.	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	CDS	25358721	25358912	1	+	0	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	exon	25358721	25358912	.	+	.	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	intron	25358913	25358998	.	+	.	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	CDS	25358999	25359334	0.87	+	0	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	exon	25358999	25359334	.	+	.	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
Ledus.S1	AUGUSTUS	stop_codon	25359335	25359337	.	+	0	transcript_id "Ledus.S1G303000.t1"; gene_id "Ledus.S1G303000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8976.t1 is derived from g10006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3642856	3645361	.	-	.	Ledus.S3G045300
Ledus.S3	AUGUSTUS	transcript	3642856	3645361	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	stop_codon	3642853	3642855	.	-	0	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	CDS	3642856	3642948	1	-	0	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	exon	3642856	3642948	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	intron	3642949	3643048	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	CDS	3643049	3643129	1	-	0	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	exon	3643049	3643129	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	intron	3643130	3643208	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	CDS	3643209	3643265	1	-	0	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	exon	3643209	3643265	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	intron	3643266	3643342	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	CDS	3643343	3643420	1	-	0	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	exon	3643343	3643420	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	intron	3643421	3643503	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	CDS	3643504	3643652	1	-	2	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	exon	3643504	3643652	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	intron	3643653	3643779	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	CDS	3643780	3643905	1	-	2	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	exon	3643780	3643905	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	intron	3643906	3643988	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	CDS	3643989	3644130	1	-	0	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	exon	3643989	3644130	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	intron	3644131	3644260	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	CDS	3644261	3644323	1	-	0	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	exon	3644261	3644323	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	intron	3644324	3644471	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	CDS	3644472	3644575	1	-	2	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	exon	3644472	3644575	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	intron	3644576	3644688	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	CDS	3644689	3644767	1	-	0	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	exon	3644689	3644767	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	intron	3644768	3644856	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	CDS	3644857	3644976	1	-	0	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	exon	3644857	3644976	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	intron	3644977	3645067	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	CDS	3645068	3645361	0.94	-	0	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	exon	3645068	3645361	.	-	.	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
Ledus.S3	AUGUSTUS	start_codon	3645359	3645361	.	-	0	transcript_id "Ledus.S3G045300.t1"; gene_id "Ledus.S3G045300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10714.t1 is derived from g11744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17337316	17339782	.	+	.	Ledus.S3G219100
Ledus.S3	AUGUSTUS	transcript	17337316	17339782	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	start_codon	17337316	17337318	.	+	0	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17337316	17337402	0.92	+	0	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17337316	17337402	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17337403	17337500	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17337501	17337566	1	+	0	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17337501	17337566	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17337567	17337672	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17337673	17337747	1	+	0	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17337673	17337747	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17337748	17337872	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17337873	17337948	0.25	+	0	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17337873	17337948	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17337949	17338035	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17338036	17338065	0.49	+	2	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17338036	17338065	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17338066	17338171	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17338172	17338218	0.99	+	2	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17338172	17338218	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17338219	17338304	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17338305	17338362	1	+	0	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17338305	17338362	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17338363	17338585	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17338586	17338635	0.94	+	2	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17338586	17338635	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17338636	17338751	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17338752	17338808	0.94	+	0	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17338752	17338808	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17338809	17338927	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17338928	17339010	0.94	+	0	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17338928	17339010	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17339011	17339099	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17339100	17339174	0.94	+	1	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17339100	17339174	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17339175	17339260	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17339261	17339288	0.94	+	1	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17339261	17339288	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17339289	17339377	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17339378	17339434	0.93	+	0	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17339378	17339434	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17339435	17339544	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17339545	17339616	0.98	+	0	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17339545	17339616	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	intron	17339617	17339707	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	CDS	17339708	17339782	1	+	0	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	exon	17339708	17339782	.	+	.	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
Ledus.S3	AUGUSTUS	stop_codon	17339783	17339785	.	+	0	transcript_id "Ledus.S3G219100.t1"; gene_id "Ledus.S3G219100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12007.t1 is derived from g5626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8527076	8527330	.	+	.	Ledus.S4G116300
Ledus.S4	AUGUSTUS	transcript	8527076	8527330	.	+	.	transcript_id "Ledus.S4G116300.t1"; gene_id "Ledus.S4G116300"
Ledus.S4	AUGUSTUS	start_codon	8527076	8527078	.	+	0	transcript_id "Ledus.S4G116300.t1"; gene_id "Ledus.S4G116300"
Ledus.S4	AUGUSTUS	CDS	8527076	8527330	0.85	+	0	transcript_id "Ledus.S4G116300.t1"; gene_id "Ledus.S4G116300"
Ledus.S4	AUGUSTUS	exon	8527076	8527330	.	+	.	transcript_id "Ledus.S4G116300.t1"; gene_id "Ledus.S4G116300"
Ledus.S4	AUGUSTUS	stop_codon	8527331	8527333	.	+	0	transcript_id "Ledus.S4G116300.t1"; gene_id "Ledus.S4G116300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3758.t1 is derived from g1194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11692481	11693207	.	-	.	Ledus.S1G117900
Ledus.S1	AUGUSTUS	transcript	11692481	11693207	.	-	.	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	stop_codon	11692478	11692480	.	-	0	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	CDS	11692481	11692495	0.53	-	0	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	exon	11692481	11692495	.	-	.	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	intron	11692496	11692601	.	-	.	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	CDS	11692602	11692628	0.54	-	0	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	exon	11692602	11692628	.	-	.	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	intron	11692629	11692710	.	-	.	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	CDS	11692711	11692769	0.47	-	2	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	exon	11692711	11692769	.	-	.	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	intron	11692770	11692978	.	-	.	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	CDS	11692979	11693207	0.42	-	0	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	exon	11692979	11693207	.	-	.	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
Ledus.S1	AUGUSTUS	start_codon	11693205	11693207	.	-	0	transcript_id "Ledus.S1G117900.t1"; gene_id "Ledus.S1G117900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6713.t1 is derived from g4156.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33494476	33496162	.	+	.	Ledus.S1G413400
Ledus.S1	AUGUSTUS	transcript	33494476	33496162	.	+	.	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	start_codon	33494476	33494478	.	+	0	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	CDS	33494476	33495086	1	+	0	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	exon	33494476	33495086	.	+	.	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	intron	33495087	33495221	.	+	.	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	CDS	33495222	33495306	1	+	1	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	exon	33495222	33495306	.	+	.	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	intron	33495307	33495397	.	+	.	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	CDS	33495398	33495482	1	+	0	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	exon	33495398	33495482	.	+	.	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	intron	33495483	33495577	.	+	.	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	CDS	33495578	33495822	1	+	2	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	exon	33495578	33495822	.	+	.	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	intron	33495823	33495916	.	+	.	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	CDS	33495917	33496162	1	+	0	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	exon	33495917	33496162	.	+	.	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
Ledus.S1	AUGUSTUS	stop_codon	33496163	33496165	.	+	0	transcript_id "Ledus.S1G413400.t1"; gene_id "Ledus.S1G413400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11706.t1 is derived from g5325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6110257	6112765	.	-	.	Ledus.S4G086200
Ledus.S4	AUGUSTUS	transcript	6110257	6112765	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	stop_codon	6110254	6110256	.	-	0	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	CDS	6110257	6110441	0.4	-	2	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	exon	6110257	6110441	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	intron	6110442	6110580	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	CDS	6110581	6110668	0.49	-	0	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	exon	6110581	6110668	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	intron	6110669	6110787	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	CDS	6110788	6110849	0.61	-	2	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	exon	6110788	6110849	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	intron	6110850	6111179	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	CDS	6111180	6111276	1	-	0	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	exon	6111180	6111276	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	intron	6111277	6111364	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	CDS	6111365	6111397	1	-	0	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	exon	6111365	6111397	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	intron	6111398	6111490	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	CDS	6111491	6111596	1	-	1	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	exon	6111491	6111596	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	intron	6111597	6111760	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	CDS	6111761	6111852	0.91	-	0	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	exon	6111761	6111852	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	intron	6111853	6111953	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	CDS	6111954	6112043	0.95	-	0	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	exon	6111954	6112043	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	intron	6112044	6112150	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	CDS	6112151	6112198	1	-	0	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	exon	6112151	6112198	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	intron	6112199	6112295	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	CDS	6112296	6112375	0.96	-	2	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	exon	6112296	6112375	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	intron	6112376	6112470	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	CDS	6112471	6112765	0.68	-	0	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	exon	6112471	6112765	.	-	.	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
Ledus.S4	AUGUSTUS	start_codon	6112763	6112765	.	-	0	transcript_id "Ledus.S4G086200.t1"; gene_id "Ledus.S4G086200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9493.t1 is derived from g10523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7410160	7410597	.	+	.	Ledus.S3G097000
Ledus.S3	AUGUSTUS	transcript	7410160	7410597	.	+	.	transcript_id "Ledus.S3G097000.t1"; gene_id "Ledus.S3G097000"
Ledus.S3	AUGUSTUS	start_codon	7410160	7410162	.	+	0	transcript_id "Ledus.S3G097000.t1"; gene_id "Ledus.S3G097000"
Ledus.S3	AUGUSTUS	CDS	7410160	7410597	0.73	+	0	transcript_id "Ledus.S3G097000.t1"; gene_id "Ledus.S3G097000"
Ledus.S3	AUGUSTUS	exon	7410160	7410597	.	+	.	transcript_id "Ledus.S3G097000.t1"; gene_id "Ledus.S3G097000"
Ledus.S3	AUGUSTUS	stop_codon	7410598	7410600	.	+	0	transcript_id "Ledus.S3G097000.t1"; gene_id "Ledus.S3G097000"
# This transcript jg4512.t2 is derived from g1948.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4512.t3 is derived from g1948.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4513.t1 is derived from g1950.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17464728	17465914	.	+	.	Ledus.S1G193400
Ledus.S1	AUGUSTUS	transcript	17464728	17465914	.	+	.	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	start_codon	17464728	17464730	.	+	0	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	CDS	17464728	17464799	0.82	+	0	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	exon	17464728	17464799	.	+	.	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	intron	17464800	17464928	.	+	.	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	CDS	17464929	17465028	1	+	0	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	exon	17464929	17465028	.	+	.	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	intron	17465029	17465115	.	+	.	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	CDS	17465116	17465201	1	+	2	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	exon	17465116	17465201	.	+	.	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	intron	17465202	17465295	.	+	.	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	CDS	17465296	17465387	1	+	0	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	exon	17465296	17465387	.	+	.	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	intron	17465388	17465474	.	+	.	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	CDS	17465475	17465589	1	+	1	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	exon	17465475	17465589	.	+	.	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	intron	17465590	17465719	.	+	.	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	CDS	17465720	17465914	0.97	+	0	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	exon	17465720	17465914	.	+	.	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
Ledus.S1	AUGUSTUS	stop_codon	17465915	17465917	.	+	0	transcript_id "Ledus.S1G193400.t1"; gene_id "Ledus.S1G193400"
# This transcript jg3481.t2 is derived from g916.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg3482.t1 is derived from g917.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8666581	8671954	.	-	.	Ledus.S1G090300
Ledus.S1	AUGUSTUS	transcript	8670823	8671954	.	-	.	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	stop_codon	8670820	8670822	.	-	0	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8670823	8670825	0.9	-	0	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8670823	8670825	.	-	.	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8670826	8671119	.	-	.	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8671120	8671178	0.9	-	2	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8671120	8671178	.	-	.	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8671179	8671302	.	-	.	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8671303	8671401	0.9	-	2	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8671303	8671401	.	-	.	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8671402	8671533	.	-	.	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8671534	8671954	0.91	-	0	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8671534	8671954	.	-	.	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	start_codon	8671952	8671954	.	-	0	transcript_id "Ledus.S1G090300.t1"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	transcript	8666581	8671954	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	stop_codon	8666578	8666580	.	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8666581	8666679	0.64	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8666581	8666679	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8666680	8666790	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8666791	8666901	1	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8666791	8666901	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8666902	8667047	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8667048	8667149	0.77	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8667048	8667149	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8667150	8667347	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8667348	8667402	0.76	-	1	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8667348	8667402	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8667403	8667586	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8667587	8667723	1	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8667587	8667723	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8667724	8667945	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8667946	8668010	1	-	2	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8667946	8668010	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8668011	8668105	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8668106	8668237	1	-	2	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8668106	8668237	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8668238	8668367	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8668368	8668440	1	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8668368	8668440	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8668441	8668614	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8668615	8668716	1	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8668615	8668716	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8668717	8668816	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8668817	8668894	1	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8668817	8668894	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8668895	8669032	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8669033	8669158	1	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8669033	8669158	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8669159	8669331	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8669332	8669449	1	-	1	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8669332	8669449	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8669450	8669540	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8669541	8669697	1	-	2	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8669541	8669697	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8669698	8669795	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8669796	8669834	1	-	2	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8669796	8669834	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8669835	8669919	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8669920	8669965	1	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8669920	8669965	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8669966	8670102	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8670103	8670205	1	-	1	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8670103	8670205	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8670206	8670305	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8670306	8670417	1	-	2	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8670306	8670417	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8670418	8670505	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8670506	8670681	0.49	-	1	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8670506	8670681	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8670682	8670779	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8670780	8670892	0.35	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8670780	8670892	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8670893	8671119	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8671120	8671178	1	-	2	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8671120	8671178	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8671179	8671302	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8671303	8671401	1	-	2	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8671303	8671401	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8671402	8671533	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8671534	8671954	0.9	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8671534	8671954	.	-	.	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	start_codon	8671952	8671954	.	-	0	transcript_id "Ledus.S1G090300.t2"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	transcript	8666581	8671954	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	stop_codon	8666578	8666580	.	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8666581	8666679	0.57	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8666581	8666679	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8666680	8666790	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8666791	8666901	1	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8666791	8666901	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8666902	8667047	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8667048	8667149	0.75	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8667048	8667149	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8667150	8667347	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8667348	8667414	0.71	-	1	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8667348	8667414	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8667415	8667586	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8667587	8667723	1	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8667587	8667723	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8667724	8667945	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8667946	8668010	1	-	2	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8667946	8668010	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8668011	8668105	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8668106	8668237	1	-	2	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8668106	8668237	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8668238	8668367	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8668368	8668440	1	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8668368	8668440	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8668441	8668614	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8668615	8668716	1	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8668615	8668716	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8668717	8668816	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8668817	8668894	1	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8668817	8668894	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8668895	8669032	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8669033	8669158	1	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8669033	8669158	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8669159	8669331	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8669332	8669449	1	-	1	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8669332	8669449	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8669450	8669540	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8669541	8669697	1	-	2	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8669541	8669697	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8669698	8669795	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8669796	8669834	1	-	2	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8669796	8669834	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8669835	8669919	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8669920	8669965	1	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8669920	8669965	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8669966	8670102	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8670103	8670205	1	-	1	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8670103	8670205	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8670206	8670305	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8670306	8670417	1	-	2	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8670306	8670417	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8670418	8670505	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8670506	8670681	0.44	-	1	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8670506	8670681	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8670682	8670779	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8670780	8670892	0.28	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8670780	8670892	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8670893	8671119	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8671120	8671178	1	-	2	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8671120	8671178	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8671179	8671302	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8671303	8671401	1	-	2	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8671303	8671401	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	intron	8671402	8671533	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	CDS	8671534	8671954	0.85	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	exon	8671534	8671954	.	-	.	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
Ledus.S1	AUGUSTUS	start_codon	8671952	8671954	.	-	0	transcript_id "Ledus.S1G090300.t3"; gene_id "Ledus.S1G090300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3255.t1 is derived from g690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7143607	7146297	.	+	.	Ledus.S1G067600
Ledus.S1	AUGUSTUS	transcript	7143607	7146297	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	start_codon	7143607	7143609	.	+	0	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	CDS	7143607	7143715	0.99	+	0	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	exon	7143607	7143715	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	intron	7143716	7143815	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	CDS	7143816	7143840	1	+	2	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	exon	7143816	7143840	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	intron	7143841	7143908	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	CDS	7143909	7143976	1	+	1	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	exon	7143909	7143976	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	intron	7143977	7144069	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	CDS	7144070	7144479	1	+	2	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	exon	7144070	7144479	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	intron	7144480	7144558	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	CDS	7144559	7144729	1	+	0	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	exon	7144559	7144729	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	intron	7144730	7144821	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	CDS	7144822	7144946	1	+	0	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	exon	7144822	7144946	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	intron	7144947	7145046	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	CDS	7145047	7145095	0.95	+	1	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	exon	7145047	7145095	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	intron	7145096	7145199	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	CDS	7145200	7145358	0.59	+	0	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	exon	7145200	7145358	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	intron	7145359	7145470	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	CDS	7145471	7145556	1	+	0	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	exon	7145471	7145556	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	intron	7145557	7145650	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	CDS	7145651	7145713	1	+	1	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	exon	7145651	7145713	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	intron	7145714	7145809	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	CDS	7145810	7145959	1	+	1	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	exon	7145810	7145959	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	intron	7145960	7146047	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	CDS	7146048	7146297	0.94	+	1	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	exon	7146048	7146297	.	+	.	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
Ledus.S1	AUGUSTUS	stop_codon	7146298	7146300	.	+	0	transcript_id "Ledus.S1G067600.t1"; gene_id "Ledus.S1G067600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1949.t1 is derived from g8812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13653730	13657119	.	-	.	Ledus.S2G183100
Ledus.S2	AUGUSTUS	transcript	13653730	13657119	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	stop_codon	13653727	13653729	.	-	0	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	CDS	13653730	13654014	1	-	0	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	exon	13653730	13654014	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	intron	13654015	13654118	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	CDS	13654119	13654478	0.66	-	0	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	exon	13654119	13654478	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	intron	13654479	13654555	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	CDS	13654556	13654837	1	-	0	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	exon	13654556	13654837	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	intron	13654838	13654935	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	CDS	13654936	13655007	0.97	-	0	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	exon	13654936	13655007	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	intron	13655008	13655083	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	CDS	13655084	13655305	1	-	0	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	exon	13655084	13655305	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	intron	13655306	13655387	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	CDS	13655388	13656154	0.79	-	2	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	exon	13655388	13656154	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	intron	13656155	13656244	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	CDS	13656245	13656473	1	-	0	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	exon	13656245	13656473	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	intron	13656474	13656574	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	CDS	13656575	13656740	0.98	-	1	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	exon	13656575	13656740	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	intron	13656741	13657087	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	CDS	13657088	13657119	0.52	-	0	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	exon	13657088	13657119	.	-	.	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
Ledus.S2	AUGUSTUS	start_codon	13657117	13657119	.	-	0	transcript_id "Ledus.S2G183100.t1"; gene_id "Ledus.S2G183100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5968.t1 is derived from g3411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28086336	28087040	.	-	.	Ledus.S1G338900
Ledus.S1	AUGUSTUS	transcript	28086336	28087040	.	-	.	transcript_id "Ledus.S1G338900.t1"; gene_id "Ledus.S1G338900"
Ledus.S1	AUGUSTUS	stop_codon	28086333	28086335	.	-	0	transcript_id "Ledus.S1G338900.t1"; gene_id "Ledus.S1G338900"
Ledus.S1	AUGUSTUS	CDS	28086336	28087040	1	-	0	transcript_id "Ledus.S1G338900.t1"; gene_id "Ledus.S1G338900"
Ledus.S1	AUGUSTUS	exon	28086336	28087040	.	-	.	transcript_id "Ledus.S1G338900.t1"; gene_id "Ledus.S1G338900"
Ledus.S1	AUGUSTUS	start_codon	28087038	28087040	.	-	0	transcript_id "Ledus.S1G338900.t1"; gene_id "Ledus.S1G338900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6652.t1 is derived from g4095.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32892386	32893492	.	+	.	Ledus.S1G407300
Ledus.S1	AUGUSTUS	transcript	32892386	32893492	.	+	.	transcript_id "Ledus.S1G407300.t1"; gene_id "Ledus.S1G407300"
Ledus.S1	AUGUSTUS	start_codon	32892386	32892388	.	+	0	transcript_id "Ledus.S1G407300.t1"; gene_id "Ledus.S1G407300"
Ledus.S1	AUGUSTUS	CDS	32892386	32893492	0.97	+	0	transcript_id "Ledus.S1G407300.t1"; gene_id "Ledus.S1G407300"
Ledus.S1	AUGUSTUS	exon	32892386	32893492	.	+	.	transcript_id "Ledus.S1G407300.t1"; gene_id "Ledus.S1G407300"
Ledus.S1	AUGUSTUS	stop_codon	32893493	32893495	.	+	0	transcript_id "Ledus.S1G407300.t1"; gene_id "Ledus.S1G407300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg727.t1 is derived from g7588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4509398	4509694	.	-	.	Ledus.S2G060900
Ledus.S2	AUGUSTUS	transcript	4509398	4509694	.	-	.	transcript_id "Ledus.S2G060900.t1"; gene_id "Ledus.S2G060900"
Ledus.S2	AUGUSTUS	stop_codon	4509395	4509397	.	-	0	transcript_id "Ledus.S2G060900.t1"; gene_id "Ledus.S2G060900"
Ledus.S2	AUGUSTUS	CDS	4509398	4509694	0.93	-	0	transcript_id "Ledus.S2G060900.t1"; gene_id "Ledus.S2G060900"
Ledus.S2	AUGUSTUS	exon	4509398	4509694	.	-	.	transcript_id "Ledus.S2G060900.t1"; gene_id "Ledus.S2G060900"
Ledus.S2	AUGUSTUS	start_codon	4509692	4509694	.	-	0	transcript_id "Ledus.S2G060900.t1"; gene_id "Ledus.S2G060900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg965.t1 is derived from g7827.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6372601	6375755	.	-	.	Ledus.S2G084800
Ledus.S2	AUGUSTUS	transcript	6372601	6375658	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	stop_codon	6372598	6372600	.	-	0	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6372601	6372623	0.97	-	2	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6372601	6372623	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6372624	6372709	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6372710	6372785	0.65	-	0	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6372710	6372785	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6372786	6372875	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6372876	6372894	0.36	-	1	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6372876	6372894	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6372895	6373261	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6373262	6373278	0.65	-	0	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6373262	6373278	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6373279	6373381	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6373382	6373516	0.65	-	0	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6373382	6373516	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6373517	6373605	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6373606	6373710	1	-	0	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6373606	6373710	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6373711	6373802	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6373803	6373875	1	-	1	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6373803	6373875	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6373876	6374059	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374060	6374130	1	-	0	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374060	6374130	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374131	6374240	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374241	6374293	1	-	2	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374241	6374293	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374294	6374388	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374389	6374449	1	-	0	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374389	6374449	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374450	6374533	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374534	6374618	1	-	1	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374534	6374618	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374619	6374709	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374710	6374718	0.77	-	1	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374710	6374718	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374719	6374779	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374780	6374835	0.86	-	0	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374780	6374835	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374836	6374916	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374917	6374992	1	-	1	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374917	6374992	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374993	6375107	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6375108	6375173	1	-	1	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6375108	6375173	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6375174	6375251	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6375252	6375336	1	-	2	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6375252	6375336	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6375337	6375426	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6375427	6375658	0.97	-	0	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6375427	6375658	.	-	.	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	start_codon	6375656	6375658	.	-	0	transcript_id "Ledus.S2G084800.t1"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	transcript	6372601	6375755	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	stop_codon	6372598	6372600	.	-	0	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6372601	6372623	0.95	-	2	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6372601	6372623	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6372624	6372709	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6372710	6372785	0.57	-	0	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6372710	6372785	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6372786	6372875	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6372876	6372894	0.36	-	1	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6372876	6372894	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6372895	6373261	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6373262	6373278	0.51	-	0	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6373262	6373278	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6373279	6373381	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6373382	6373516	0.58	-	0	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6373382	6373516	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6373517	6373605	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6373606	6373710	1	-	0	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6373606	6373710	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6373711	6373802	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6373803	6373875	1	-	1	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6373803	6373875	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6373876	6374059	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374060	6374130	1	-	0	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374060	6374130	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374131	6374240	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374241	6374293	1	-	2	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374241	6374293	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374294	6374388	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374389	6374449	1	-	0	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374389	6374449	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374450	6374533	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374534	6374618	1	-	1	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374534	6374618	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374619	6374779	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374780	6374835	1	-	0	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374780	6374835	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374836	6374916	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6374917	6374992	1	-	1	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6374917	6374992	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6374993	6375107	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6375108	6375173	0.99	-	1	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6375108	6375173	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6375174	6375251	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6375252	6375336	1	-	2	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6375252	6375336	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	intron	6375337	6375430	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	CDS	6375431	6375755	0.64	-	0	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	exon	6375431	6375755	.	-	.	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
Ledus.S2	AUGUSTUS	start_codon	6375753	6375755	.	-	0	transcript_id "Ledus.S2G084800.t2"; gene_id "Ledus.S2G084800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12138.t1 is derived from g5757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9772740	9778138	.	-	.	Ledus.S4G129400
Ledus.S4	AUGUSTUS	transcript	9772740	9778138	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	stop_codon	9772737	9772739	.	-	0	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9772740	9772924	0.99	-	2	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9772740	9772924	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9772925	9773001	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9773002	9773111	1	-	1	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9773002	9773111	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9773112	9773208	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9773209	9773294	0.69	-	0	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9773209	9773294	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9773295	9773397	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9773398	9773511	1	-	0	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9773398	9773511	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9773512	9773588	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9773589	9773970	0.98	-	1	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9773589	9773970	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9773971	9774061	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9774062	9774195	1	-	0	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9774062	9774195	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9774196	9774326	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9774327	9774435	0.98	-	1	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9774327	9774435	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9774436	9774546	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9774547	9774668	0.99	-	0	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9774547	9774668	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9774669	9774757	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9774758	9774864	1	-	2	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9774758	9774864	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9774865	9775198	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9775199	9775354	1	-	2	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9775199	9775354	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9775355	9775447	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9775448	9775503	1	-	1	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9775448	9775503	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9775504	9775616	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9775617	9775668	1	-	2	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9775617	9775668	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9775669	9775765	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9775766	9776292	0.94	-	1	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9775766	9776292	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9776293	9776364	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9776365	9776507	0.37	-	0	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9776365	9776507	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9776508	9777134	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9777135	9777201	0.71	-	1	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9777135	9777201	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9777202	9777566	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9777567	9777669	1	-	2	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9777567	9777669	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9777670	9777828	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9777829	9777915	1	-	2	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9777829	9777915	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	intron	9777916	9778035	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	CDS	9778036	9778138	0.99	-	0	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	exon	9778036	9778138	.	-	.	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
Ledus.S4	AUGUSTUS	start_codon	9778136	9778138	.	-	0	transcript_id "Ledus.S4G129400.t1"; gene_id "Ledus.S4G129400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg370.t1 is derived from g7231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1995048	1997731	.	+	.	Ledus.S2G025200
Ledus.S2	AUGUSTUS	transcript	1995048	1997731	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	start_codon	1995048	1995050	.	+	0	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1995048	1995100	0.71	+	0	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1995048	1995100	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	intron	1995101	1995182	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1995183	1995209	0.66	+	1	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1995183	1995209	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	intron	1995210	1995290	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1995291	1995516	0.66	+	1	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1995291	1995516	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	intron	1995517	1995614	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1995615	1995832	0.94	+	0	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1995615	1995832	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	intron	1995833	1995943	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1995944	1996058	1	+	1	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1995944	1996058	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	intron	1996059	1996164	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1996165	1996254	0.99	+	0	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1996165	1996254	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	intron	1996255	1996454	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1996455	1996634	0.99	+	0	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1996455	1996634	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	intron	1996635	1996749	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1996750	1996869	1	+	0	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1996750	1996869	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	intron	1996870	1996962	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1996963	1997073	1	+	0	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1996963	1997073	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	intron	1997074	1997190	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1997191	1997276	0.99	+	0	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1997191	1997276	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	intron	1997277	1997426	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1997427	1997444	1	+	1	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1997427	1997444	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	intron	1997445	1997519	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1997520	1997537	0.84	+	1	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1997520	1997537	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	intron	1997538	1997727	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	CDS	1997728	1997731	1	+	1	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	exon	1997728	1997731	.	+	.	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
Ledus.S2	AUGUSTUS	stop_codon	1997732	1997734	.	+	0	transcript_id "Ledus.S2G025200.t1"; gene_id "Ledus.S2G025200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6258.t1 is derived from g3701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29932485	29932742	.	-	.	Ledus.S1G367900
Ledus.S1	AUGUSTUS	transcript	29932485	29932742	.	-	.	transcript_id "Ledus.S1G367900.t1"; gene_id "Ledus.S1G367900"
Ledus.S1	AUGUSTUS	stop_codon	29932482	29932484	.	-	0	transcript_id "Ledus.S1G367900.t1"; gene_id "Ledus.S1G367900"
Ledus.S1	AUGUSTUS	CDS	29932485	29932742	1	-	0	transcript_id "Ledus.S1G367900.t1"; gene_id "Ledus.S1G367900"
Ledus.S1	AUGUSTUS	exon	29932485	29932742	.	-	.	transcript_id "Ledus.S1G367900.t1"; gene_id "Ledus.S1G367900"
Ledus.S1	AUGUSTUS	start_codon	29932740	29932742	.	-	0	transcript_id "Ledus.S1G367900.t1"; gene_id "Ledus.S1G367900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4755.t1 is derived from g2193.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19622818	19625806	.	+	.	Ledus.S1G217600
Ledus.S1	AUGUSTUS	transcript	19622818	19625806	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	start_codon	19622818	19622820	.	+	0	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	CDS	19622818	19622921	0.98	+	0	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	exon	19622818	19622921	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	intron	19622922	19623005	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	CDS	19623006	19623088	1	+	1	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	exon	19623006	19623088	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	intron	19623089	19623171	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	CDS	19623172	19623364	1	+	2	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	exon	19623172	19623364	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	intron	19623365	19623452	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	CDS	19623453	19623591	1	+	1	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	exon	19623453	19623591	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	intron	19623592	19623675	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	CDS	19623676	19623841	1	+	0	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	exon	19623676	19623841	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	intron	19623842	19623926	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	CDS	19623927	19624093	1	+	2	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	exon	19623927	19624093	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	intron	19624094	19624167	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	CDS	19624168	19624341	1	+	0	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	exon	19624168	19624341	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	intron	19624342	19624498	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	CDS	19624499	19624594	1	+	0	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	exon	19624499	19624594	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	intron	19624595	19624688	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	CDS	19624689	19624820	1	+	0	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	exon	19624689	19624820	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	intron	19624821	19624900	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	CDS	19624901	19625220	1	+	0	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	exon	19624901	19625220	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	intron	19625221	19625315	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	CDS	19625316	19625586	1	+	1	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	exon	19625316	19625586	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	intron	19625587	19625665	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	CDS	19625666	19625806	1	+	0	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	exon	19625666	19625806	.	+	.	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
Ledus.S1	AUGUSTUS	stop_codon	19625807	19625809	.	+	0	transcript_id "Ledus.S1G217600.t1"; gene_id "Ledus.S1G217600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4050.t1 is derived from g1486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14315299	14316554	.	-	.	Ledus.S1G147100
Ledus.S1	AUGUSTUS	transcript	14315299	14316554	.	-	.	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	stop_codon	14315296	14315298	.	-	0	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	CDS	14315299	14315470	0.9	-	1	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	exon	14315299	14315470	.	-	.	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	intron	14315471	14315590	.	-	.	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	CDS	14315591	14315666	0.48	-	2	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	exon	14315591	14315666	.	-	.	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	intron	14315667	14315779	.	-	.	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	CDS	14315780	14315844	0.91	-	1	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	exon	14315780	14315844	.	-	.	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	intron	14315845	14315927	.	-	.	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	CDS	14315928	14316023	1	-	1	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	exon	14315928	14316023	.	-	.	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	intron	14316024	14316105	.	-	.	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	CDS	14316106	14316243	1	-	1	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	exon	14316106	14316243	.	-	.	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	intron	14316244	14316327	.	-	.	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	CDS	14316328	14316554	0.89	-	0	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	exon	14316328	14316554	.	-	.	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
Ledus.S1	AUGUSTUS	start_codon	14316552	14316554	.	-	0	transcript_id "Ledus.S1G147100.t1"; gene_id "Ledus.S1G147100"
# This transcript jg9963.t2 is derived from g10993.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9964.t1 is derived from g10994.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11592592	11592921	.	+	.	Ledus.S3G144100
Ledus.S3	AUGUSTUS	transcript	11592592	11592921	.	+	.	transcript_id "Ledus.S3G144100.t1"; gene_id "Ledus.S3G144100"
Ledus.S3	AUGUSTUS	start_codon	11592592	11592594	.	+	0	transcript_id "Ledus.S3G144100.t1"; gene_id "Ledus.S3G144100"
Ledus.S3	AUGUSTUS	CDS	11592592	11592685	0.91	+	0	transcript_id "Ledus.S3G144100.t1"; gene_id "Ledus.S3G144100"
Ledus.S3	AUGUSTUS	exon	11592592	11592685	.	+	.	transcript_id "Ledus.S3G144100.t1"; gene_id "Ledus.S3G144100"
Ledus.S3	AUGUSTUS	intron	11592686	11592808	.	+	.	transcript_id "Ledus.S3G144100.t1"; gene_id "Ledus.S3G144100"
Ledus.S3	AUGUSTUS	CDS	11592809	11592921	1	+	2	transcript_id "Ledus.S3G144100.t1"; gene_id "Ledus.S3G144100"
Ledus.S3	AUGUSTUS	exon	11592809	11592921	.	+	.	transcript_id "Ledus.S3G144100.t1"; gene_id "Ledus.S3G144100"
Ledus.S3	AUGUSTUS	stop_codon	11592922	11592924	.	+	0	transcript_id "Ledus.S3G144100.t1"; gene_id "Ledus.S3G144100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9304.t1 is derived from g10334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5886452	5886865	.	+	.	Ledus.S3G078100
Ledus.S3	AUGUSTUS	transcript	5886452	5886865	.	+	.	transcript_id "Ledus.S3G078100.t1"; gene_id "Ledus.S3G078100"
Ledus.S3	AUGUSTUS	start_codon	5886452	5886454	.	+	0	transcript_id "Ledus.S3G078100.t1"; gene_id "Ledus.S3G078100"
Ledus.S3	AUGUSTUS	CDS	5886452	5886865	1	+	0	transcript_id "Ledus.S3G078100.t1"; gene_id "Ledus.S3G078100"
Ledus.S3	AUGUSTUS	exon	5886452	5886865	.	+	.	transcript_id "Ledus.S3G078100.t1"; gene_id "Ledus.S3G078100"
Ledus.S3	AUGUSTUS	stop_codon	5886866	5886868	.	+	0	transcript_id "Ledus.S3G078100.t1"; gene_id "Ledus.S3G078100"
# This transcript jg12237.t2 is derived from g5857.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12238.t1 is derived from g5858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10601673	10602605	.	+	.	Ledus.S4G139400
Ledus.S4	AUGUSTUS	transcript	10601673	10602605	.	+	.	transcript_id "Ledus.S4G139400.t1"; gene_id "Ledus.S4G139400"
Ledus.S4	AUGUSTUS	start_codon	10601673	10601675	.	+	0	transcript_id "Ledus.S4G139400.t1"; gene_id "Ledus.S4G139400"
Ledus.S4	AUGUSTUS	CDS	10601673	10602605	0.64	+	0	transcript_id "Ledus.S4G139400.t1"; gene_id "Ledus.S4G139400"
Ledus.S4	AUGUSTUS	exon	10601673	10602605	.	+	.	transcript_id "Ledus.S4G139400.t1"; gene_id "Ledus.S4G139400"
Ledus.S4	AUGUSTUS	stop_codon	10602606	10602608	.	+	0	transcript_id "Ledus.S4G139400.t1"; gene_id "Ledus.S4G139400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3400.t1 is derived from g835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8089919	8091129	.	-	.	Ledus.S1G082100
Ledus.S1	AUGUSTUS	transcript	8089919	8091129	.	-	.	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	stop_codon	8089916	8089918	.	-	0	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	CDS	8089919	8089970	1	-	1	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	exon	8089919	8089970	.	-	.	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	intron	8089971	8090194	.	-	.	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	CDS	8090195	8090398	1	-	1	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	exon	8090195	8090398	.	-	.	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	intron	8090399	8090518	.	-	.	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	CDS	8090519	8090662	1	-	1	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	exon	8090519	8090662	.	-	.	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	intron	8090663	8090741	.	-	.	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	CDS	8090742	8090869	1	-	0	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	exon	8090742	8090869	.	-	.	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	intron	8090870	8091063	.	-	.	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	CDS	8091064	8091129	1	-	0	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	exon	8091064	8091129	.	-	.	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
Ledus.S1	AUGUSTUS	start_codon	8091127	8091129	.	-	0	transcript_id "Ledus.S1G082100.t1"; gene_id "Ledus.S1G082100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1785.t1 is derived from g8648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12583168	12583924	.	+	.	Ledus.S2G166700
Ledus.S2	AUGUSTUS	transcript	12583168	12583924	.	+	.	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	start_codon	12583168	12583170	.	+	0	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	CDS	12583168	12583387	0.85	+	0	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	exon	12583168	12583387	.	+	.	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	intron	12583388	12583468	.	+	.	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	CDS	12583469	12583574	1	+	2	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	exon	12583469	12583574	.	+	.	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	intron	12583575	12583654	.	+	.	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	CDS	12583655	12583754	1	+	1	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	exon	12583655	12583754	.	+	.	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	intron	12583755	12583834	.	+	.	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	CDS	12583835	12583924	1	+	0	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	exon	12583835	12583924	.	+	.	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
Ledus.S2	AUGUSTUS	stop_codon	12583925	12583927	.	+	0	transcript_id "Ledus.S2G166700.t1"; gene_id "Ledus.S2G166700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg847.t1 is derived from g7708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5654137	5656049	.	+	.	Ledus.S2G072900
Ledus.S2	AUGUSTUS	transcript	5654137	5656049	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	start_codon	5654137	5654139	.	+	0	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	CDS	5654137	5654226	0.82	+	0	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	exon	5654137	5654226	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	intron	5654227	5654307	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	CDS	5654308	5654494	1	+	0	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	exon	5654308	5654494	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	intron	5654495	5654604	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	CDS	5654605	5654705	1	+	2	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	exon	5654605	5654705	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	intron	5654706	5654809	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	CDS	5654810	5655080	0.49	+	0	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	exon	5654810	5655080	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	intron	5655081	5655170	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	CDS	5655171	5655237	0.5	+	2	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	exon	5655171	5655237	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	intron	5655238	5655321	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	CDS	5655322	5655688	0.96	+	1	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	exon	5655322	5655688	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	intron	5655689	5655824	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	CDS	5655825	5655929	0.98	+	0	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	exon	5655825	5655929	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	intron	5655930	5656022	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	CDS	5656023	5656049	0.98	+	0	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	exon	5656023	5656049	.	+	.	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
Ledus.S2	AUGUSTUS	stop_codon	5656050	5656052	.	+	0	transcript_id "Ledus.S2G072900.t1"; gene_id "Ledus.S2G072900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg565.t1 is derived from g7426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3364422	3365294	.	-	.	Ledus.S2G044700
Ledus.S2	AUGUSTUS	transcript	3364422	3365294	.	-	.	transcript_id "Ledus.S2G044700.t1"; gene_id "Ledus.S2G044700"
Ledus.S2	AUGUSTUS	stop_codon	3364419	3364421	.	-	0	transcript_id "Ledus.S2G044700.t1"; gene_id "Ledus.S2G044700"
Ledus.S2	AUGUSTUS	CDS	3364422	3365058	0.26	-	1	transcript_id "Ledus.S2G044700.t1"; gene_id "Ledus.S2G044700"
Ledus.S2	AUGUSTUS	exon	3364422	3365058	.	-	.	transcript_id "Ledus.S2G044700.t1"; gene_id "Ledus.S2G044700"
Ledus.S2	AUGUSTUS	intron	3365059	3365166	.	-	.	transcript_id "Ledus.S2G044700.t1"; gene_id "Ledus.S2G044700"
Ledus.S2	AUGUSTUS	CDS	3365167	3365294	0.47	-	0	transcript_id "Ledus.S2G044700.t1"; gene_id "Ledus.S2G044700"
Ledus.S2	AUGUSTUS	exon	3365167	3365294	.	-	.	transcript_id "Ledus.S2G044700.t1"; gene_id "Ledus.S2G044700"
Ledus.S2	AUGUSTUS	start_codon	3365292	3365294	.	-	0	transcript_id "Ledus.S2G044700.t1"; gene_id "Ledus.S2G044700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6951.t1 is derived from g6482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	227833	228069	.	+	.	Ledus.C7G001200
Ledus.C7	AUGUSTUS	transcript	227833	228069	.	+	.	transcript_id "Ledus.C7G001200.t1"; gene_id "Ledus.C7G001200"
Ledus.C7	AUGUSTUS	start_codon	227833	227835	.	+	0	transcript_id "Ledus.C7G001200.t1"; gene_id "Ledus.C7G001200"
Ledus.C7	AUGUSTUS	CDS	227833	228069	0.97	+	0	transcript_id "Ledus.C7G001200.t1"; gene_id "Ledus.C7G001200"
Ledus.C7	AUGUSTUS	exon	227833	228069	.	+	.	transcript_id "Ledus.C7G001200.t1"; gene_id "Ledus.C7G001200"
Ledus.C7	AUGUSTUS	stop_codon	228070	228072	.	+	0	transcript_id "Ledus.C7G001200.t1"; gene_id "Ledus.C7G001200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg950.t1 is derived from g7811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6267298	6268233	.	+	.	Ledus.S2G083200
Ledus.S2	AUGUSTUS	transcript	6267298	6268233	.	+	.	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	start_codon	6267298	6267300	.	+	0	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	CDS	6267298	6267524	0.86	+	0	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	exon	6267298	6267524	.	+	.	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	intron	6267525	6267611	.	+	.	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	CDS	6267612	6267748	1	+	1	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	exon	6267612	6267748	.	+	.	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	intron	6267749	6267826	.	+	.	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	CDS	6267827	6267963	1	+	2	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	exon	6267827	6267963	.	+	.	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	intron	6267964	6268059	.	+	.	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	CDS	6268060	6268233	1	+	0	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	exon	6268060	6268233	.	+	.	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
Ledus.S2	AUGUSTUS	stop_codon	6268234	6268236	.	+	0	transcript_id "Ledus.S2G083200.t1"; gene_id "Ledus.S2G083200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11213.t1 is derived from g4831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2758121	2761860	.	+	.	Ledus.S4G036900
Ledus.S4	AUGUSTUS	transcript	2758121	2761860	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	start_codon	2758121	2758123	.	+	0	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2758121	2758582	0.56	+	0	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2758121	2758582	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2758583	2758731	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2758732	2758843	1	+	0	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2758732	2758843	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2758844	2758987	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2758988	2759067	0.86	+	2	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2758988	2759067	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2759068	2759177	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2759178	2759200	0.85	+	0	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2759178	2759200	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2759201	2759316	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2759317	2759398	0.99	+	1	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2759317	2759398	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2759399	2759531	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2759532	2759680	1	+	0	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2759532	2759680	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2759681	2759819	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2759820	2759973	1	+	1	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2759820	2759973	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2759974	2760066	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2760067	2760174	1	+	0	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2760067	2760174	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2760175	2760316	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2760317	2760362	0.83	+	0	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2760317	2760362	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2760363	2760709	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2760710	2760832	0.63	+	2	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2760710	2760832	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2760833	2760963	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2760964	2761151	1	+	2	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2760964	2761151	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2761152	2761250	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2761251	2761319	1	+	0	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2761251	2761319	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2761320	2761399	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2761400	2761546	0.99	+	0	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2761400	2761546	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2761547	2761655	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2761656	2761709	1	+	0	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2761656	2761709	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	intron	2761710	2761794	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	CDS	2761795	2761860	1	+	0	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	exon	2761795	2761860	.	+	.	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
Ledus.S4	AUGUSTUS	stop_codon	2761861	2761863	.	+	0	transcript_id "Ledus.S4G036900.t1"; gene_id "Ledus.S4G036900"
# This transcript jg13170.t2 is derived from g9444.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13171.t1 is derived from g9445.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C41	AUGUSTUS	gene	5667	8740	.	+	.	Ledus.C41G000200
Ledus.C41	AUGUSTUS	transcript	5667	8740	.	+	.	transcript_id "Ledus.C41G000200.t1"; gene_id "Ledus.C41G000200"
Ledus.C41	AUGUSTUS	start_codon	5667	5669	.	+	0	transcript_id "Ledus.C41G000200.t1"; gene_id "Ledus.C41G000200"
Ledus.C41	AUGUSTUS	CDS	5667	8432	0.2	+	0	transcript_id "Ledus.C41G000200.t1"; gene_id "Ledus.C41G000200"
Ledus.C41	AUGUSTUS	exon	5667	8432	.	+	.	transcript_id "Ledus.C41G000200.t1"; gene_id "Ledus.C41G000200"
Ledus.C41	AUGUSTUS	intron	8433	8511	.	+	.	transcript_id "Ledus.C41G000200.t1"; gene_id "Ledus.C41G000200"
Ledus.C41	AUGUSTUS	CDS	8512	8603	0.98	+	0	transcript_id "Ledus.C41G000200.t1"; gene_id "Ledus.C41G000200"
Ledus.C41	AUGUSTUS	exon	8512	8603	.	+	.	transcript_id "Ledus.C41G000200.t1"; gene_id "Ledus.C41G000200"
Ledus.C41	AUGUSTUS	intron	8604	8694	.	+	.	transcript_id "Ledus.C41G000200.t1"; gene_id "Ledus.C41G000200"
Ledus.C41	AUGUSTUS	CDS	8695	8740	0.98	+	1	transcript_id "Ledus.C41G000200.t1"; gene_id "Ledus.C41G000200"
Ledus.C41	AUGUSTUS	exon	8695	8740	.	+	.	transcript_id "Ledus.C41G000200.t1"; gene_id "Ledus.C41G000200"
Ledus.C41	AUGUSTUS	stop_codon	8741	8743	.	+	0	transcript_id "Ledus.C41G000200.t1"; gene_id "Ledus.C41G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2016.t1 is derived from g8879.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14200060	14201322	.	-	.	Ledus.S2G189800
Ledus.S2	AUGUSTUS	transcript	14200060	14201322	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	stop_codon	14200057	14200059	.	-	0	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	CDS	14200060	14200125	1	-	0	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	exon	14200060	14200125	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	intron	14200126	14200216	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	CDS	14200217	14200331	1	-	1	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	exon	14200217	14200331	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	intron	14200332	14200411	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	CDS	14200412	14200482	0.97	-	0	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	exon	14200412	14200482	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	intron	14200483	14200590	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	CDS	14200591	14200629	0.99	-	0	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	exon	14200591	14200629	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	intron	14200630	14200753	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	CDS	14200754	14200836	1	-	2	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	exon	14200754	14200836	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	intron	14200837	14200929	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	CDS	14200930	14200990	1	-	0	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	exon	14200930	14200990	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	intron	14200991	14201082	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	CDS	14201083	14201322	0.71	-	0	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	exon	14201083	14201322	.	-	.	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
Ledus.S2	AUGUSTUS	start_codon	14201320	14201322	.	-	0	transcript_id "Ledus.S2G189800.t1"; gene_id "Ledus.S2G189800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2368.t1 is derived from g9231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17628349	17630304	.	+	.	Ledus.S2G225000
Ledus.S2	AUGUSTUS	transcript	17628349	17630304	.	+	.	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	start_codon	17628349	17628351	.	+	0	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	CDS	17628349	17629173	0.97	+	0	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	exon	17628349	17629173	.	+	.	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	intron	17629174	17629273	.	+	.	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	CDS	17629274	17629618	1	+	0	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	exon	17629274	17629618	.	+	.	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	intron	17629619	17629756	.	+	.	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	CDS	17629757	17629862	1	+	0	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	exon	17629757	17629862	.	+	.	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	intron	17629863	17630008	.	+	.	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	CDS	17630009	17630304	1	+	2	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	exon	17630009	17630304	.	+	.	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
Ledus.S2	AUGUSTUS	stop_codon	17630305	17630307	.	+	0	transcript_id "Ledus.S2G225000.t1"; gene_id "Ledus.S2G225000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg842.t1 is derived from g7704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5628759	5631247	.	+	.	Ledus.S2G072500
Ledus.S2	AUGUSTUS	transcript	5628759	5631247	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	start_codon	5628759	5628761	.	+	0	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	CDS	5628759	5628900	0.67	+	0	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	exon	5628759	5628900	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	intron	5628901	5628997	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	CDS	5628998	5629423	1	+	2	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	exon	5628998	5629423	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	intron	5629424	5629508	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	CDS	5629509	5629682	1	+	2	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	exon	5629509	5629682	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	intron	5629683	5629774	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	CDS	5629775	5630161	0.91	+	2	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	exon	5629775	5630161	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	intron	5630162	5630278	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	CDS	5630279	5630522	0.99	+	2	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	exon	5630279	5630522	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	intron	5630523	5630602	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	CDS	5630603	5630750	1	+	1	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	exon	5630603	5630750	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	intron	5630751	5630833	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	CDS	5630834	5631247	0.85	+	0	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	exon	5630834	5631247	.	+	.	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
Ledus.S2	AUGUSTUS	stop_codon	5631248	5631250	.	+	0	transcript_id "Ledus.S2G072500.t1"; gene_id "Ledus.S2G072500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6780.t1 is derived from g4224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34099638	34100318	.	+	.	Ledus.S1G420100
Ledus.S1	AUGUSTUS	transcript	34099638	34100318	.	+	.	transcript_id "Ledus.S1G420100.t1"; gene_id "Ledus.S1G420100"
Ledus.S1	AUGUSTUS	start_codon	34099638	34099640	.	+	0	transcript_id "Ledus.S1G420100.t1"; gene_id "Ledus.S1G420100"
Ledus.S1	AUGUSTUS	CDS	34099638	34100318	0.68	+	0	transcript_id "Ledus.S1G420100.t1"; gene_id "Ledus.S1G420100"
Ledus.S1	AUGUSTUS	exon	34099638	34100318	.	+	.	transcript_id "Ledus.S1G420100.t1"; gene_id "Ledus.S1G420100"
Ledus.S1	AUGUSTUS	stop_codon	34100319	34100321	.	+	0	transcript_id "Ledus.S1G420100.t1"; gene_id "Ledus.S1G420100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4183.t1 is derived from g1619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15230318	15232221	.	+	.	Ledus.S1G160400
Ledus.S1	AUGUSTUS	transcript	15230318	15232221	.	+	.	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	start_codon	15230318	15230320	.	+	0	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	CDS	15230318	15230704	0.94	+	0	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	exon	15230318	15230704	.	+	.	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	intron	15230705	15230961	.	+	.	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	CDS	15230962	15231049	1	+	0	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	exon	15230962	15231049	.	+	.	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	intron	15231050	15231302	.	+	.	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	CDS	15231303	15231432	1	+	2	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	exon	15231303	15231432	.	+	.	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	intron	15231433	15231557	.	+	.	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	CDS	15231558	15232221	0.98	+	1	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	exon	15231558	15232221	.	+	.	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
Ledus.S1	AUGUSTUS	stop_codon	15232222	15232224	.	+	0	transcript_id "Ledus.S1G160400.t1"; gene_id "Ledus.S1G160400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg5256.t1 is derived from g2695.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22759969	22763118	.	+	.	Ledus.S1G267700
Ledus.S1	AUGUSTUS	transcript	22759969	22763118	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	start_codon	22759969	22759971	.	+	0	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22759969	22760181	0.38	+	0	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22759969	22760181	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22760182	22760333	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22760334	22760389	0.16	+	0	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22760334	22760389	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22760390	22760518	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22760519	22761590	0.19	+	1	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22760519	22761590	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22761591	22761709	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22761710	22761795	1	+	0	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22761710	22761795	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22761796	22761933	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22761934	22762107	1	+	1	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22761934	22762107	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22762108	22762198	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22762199	22762313	1	+	1	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22762199	22762313	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22762314	22762560	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22762561	22762658	1	+	0	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22762561	22762658	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22762659	22762828	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22762829	22762964	1	+	1	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22762829	22762964	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22762965	22763052	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22763053	22763118	1	+	0	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22763053	22763118	.	+	.	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	stop_codon	22763119	22763121	.	+	0	transcript_id "Ledus.S1G267700.t1"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	transcript	22759969	22763118	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	start_codon	22759969	22759971	.	+	0	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22759969	22760181	0.46	+	0	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22759969	22760181	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22760182	22760327	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22760328	22760369	0.7	+	0	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22760328	22760369	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22760370	22760577	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22760578	22760895	0.13	+	0	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22760578	22760895	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22760896	22760987	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22760988	22761590	0.35	+	0	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22760988	22761590	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22761591	22761709	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22761710	22761795	1	+	0	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22761710	22761795	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22761796	22761933	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22761934	22762107	1	+	1	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22761934	22762107	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22762108	22762198	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22762199	22762313	1	+	1	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22762199	22762313	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22762314	22762560	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22762561	22762658	1	+	0	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22762561	22762658	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22762659	22762828	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22762829	22762964	1	+	1	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22762829	22762964	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22762965	22763052	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22763053	22763118	1	+	0	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22763053	22763118	.	+	.	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	stop_codon	22763119	22763121	.	+	0	transcript_id "Ledus.S1G267700.t2"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	transcript	22759969	22763118	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	start_codon	22759969	22759971	.	+	0	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22759969	22760181	0.07	+	0	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22759969	22760181	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22760182	22760369	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22760370	22760389	0.18	+	0	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22760370	22760389	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22760390	22760518	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22760519	22761590	0.21	+	1	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22760519	22761590	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22761591	22761709	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22761710	22761795	1	+	0	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22761710	22761795	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22761796	22761933	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22761934	22762107	1	+	1	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22761934	22762107	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22762108	22762198	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22762199	22762313	1	+	1	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22762199	22762313	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22762314	22762560	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22762561	22762658	1	+	0	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22762561	22762658	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22762659	22762828	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22762829	22762964	1	+	1	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22762829	22762964	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	intron	22762965	22763052	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	CDS	22763053	22763118	1	+	0	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	exon	22763053	22763118	.	+	.	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
Ledus.S1	AUGUSTUS	stop_codon	22763119	22763121	.	+	0	transcript_id "Ledus.S1G267700.t3"; gene_id "Ledus.S1G267700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4894.t1 is derived from g2332.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20561800	20562427	.	-	.	Ledus.S1G231500
Ledus.S1	AUGUSTUS	transcript	20561800	20562427	.	-	.	transcript_id "Ledus.S1G231500.t1"; gene_id "Ledus.S1G231500"
Ledus.S1	AUGUSTUS	stop_codon	20561797	20561799	.	-	0	transcript_id "Ledus.S1G231500.t1"; gene_id "Ledus.S1G231500"
Ledus.S1	AUGUSTUS	CDS	20561800	20562123	0.87	-	0	transcript_id "Ledus.S1G231500.t1"; gene_id "Ledus.S1G231500"
Ledus.S1	AUGUSTUS	exon	20561800	20562123	.	-	.	transcript_id "Ledus.S1G231500.t1"; gene_id "Ledus.S1G231500"
Ledus.S1	AUGUSTUS	intron	20562124	20562223	.	-	.	transcript_id "Ledus.S1G231500.t1"; gene_id "Ledus.S1G231500"
Ledus.S1	AUGUSTUS	CDS	20562224	20562427	0.74	-	0	transcript_id "Ledus.S1G231500.t1"; gene_id "Ledus.S1G231500"
Ledus.S1	AUGUSTUS	exon	20562224	20562427	.	-	.	transcript_id "Ledus.S1G231500.t1"; gene_id "Ledus.S1G231500"
Ledus.S1	AUGUSTUS	start_codon	20562425	20562427	.	-	0	transcript_id "Ledus.S1G231500.t1"; gene_id "Ledus.S1G231500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12397.t1 is derived from g6018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11654655	11655605	.	+	.	Ledus.S4G155300
Ledus.S4	AUGUSTUS	transcript	11654655	11655605	.	+	.	transcript_id "Ledus.S4G155300.t1"; gene_id "Ledus.S4G155300"
Ledus.S4	AUGUSTUS	start_codon	11654655	11654657	.	+	0	transcript_id "Ledus.S4G155300.t1"; gene_id "Ledus.S4G155300"
Ledus.S4	AUGUSTUS	CDS	11654655	11655605	0.79	+	0	transcript_id "Ledus.S4G155300.t1"; gene_id "Ledus.S4G155300"
Ledus.S4	AUGUSTUS	exon	11654655	11655605	.	+	.	transcript_id "Ledus.S4G155300.t1"; gene_id "Ledus.S4G155300"
Ledus.S4	AUGUSTUS	stop_codon	11655606	11655608	.	+	0	transcript_id "Ledus.S4G155300.t1"; gene_id "Ledus.S4G155300"
# This transcript jg10666.t2 is derived from g11696.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10666.t3 is derived from g11696.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10667.t1 is derived from g11697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16959532	16959837	.	+	.	Ledus.S3G214400
Ledus.S3	AUGUSTUS	transcript	16959532	16959837	.	+	.	transcript_id "Ledus.S3G214400.t1"; gene_id "Ledus.S3G214400"
Ledus.S3	AUGUSTUS	start_codon	16959532	16959534	.	+	0	transcript_id "Ledus.S3G214400.t1"; gene_id "Ledus.S3G214400"
Ledus.S3	AUGUSTUS	CDS	16959532	16959837	0.95	+	0	transcript_id "Ledus.S3G214400.t1"; gene_id "Ledus.S3G214400"
Ledus.S3	AUGUSTUS	exon	16959532	16959837	.	+	.	transcript_id "Ledus.S3G214400.t1"; gene_id "Ledus.S3G214400"
Ledus.S3	AUGUSTUS	stop_codon	16959838	16959840	.	+	0	transcript_id "Ledus.S3G214400.t1"; gene_id "Ledus.S3G214400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12465.t1 is derived from g6086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12115896	12116769	.	-	.	Ledus.S4G162100
Ledus.S4	AUGUSTUS	transcript	12115896	12116769	.	-	.	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	stop_codon	12115893	12115895	.	-	0	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	CDS	12115896	12115989	1	-	1	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	exon	12115896	12115989	.	-	.	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	intron	12115990	12116070	.	-	.	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	CDS	12116071	12116148	0.59	-	1	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	exon	12116071	12116148	.	-	.	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	intron	12116149	12116252	.	-	.	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	CDS	12116253	12116319	1	-	2	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	exon	12116253	12116319	.	-	.	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	intron	12116320	12116407	.	-	.	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	CDS	12116408	12116484	1	-	1	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	exon	12116408	12116484	.	-	.	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	intron	12116485	12116558	.	-	.	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	CDS	12116559	12116605	1	-	0	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	exon	12116559	12116605	.	-	.	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	intron	12116606	12116688	.	-	.	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	CDS	12116689	12116769	1	-	0	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	exon	12116689	12116769	.	-	.	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
Ledus.S4	AUGUSTUS	start_codon	12116767	12116769	.	-	0	transcript_id "Ledus.S4G162100.t1"; gene_id "Ledus.S4G162100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12662.t1 is derived from g6284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13695602	13696509	.	-	.	Ledus.S4G181800
Ledus.S4	AUGUSTUS	transcript	13695602	13696509	.	-	.	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	stop_codon	13695599	13695601	.	-	0	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	CDS	13695602	13695697	0.85	-	0	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	exon	13695602	13695697	.	-	.	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	intron	13695698	13695871	.	-	.	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	CDS	13695872	13695978	0.84	-	2	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	exon	13695872	13695978	.	-	.	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	intron	13695979	13696119	.	-	.	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	CDS	13696120	13696206	0.61	-	2	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	exon	13696120	13696206	.	-	.	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	intron	13696207	13696439	.	-	.	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	CDS	13696440	13696509	0.85	-	0	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	exon	13696440	13696509	.	-	.	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
Ledus.S4	AUGUSTUS	start_codon	13696507	13696509	.	-	0	transcript_id "Ledus.S4G181800.t1"; gene_id "Ledus.S4G181800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3541.t1 is derived from g977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9351862	9352372	.	-	.	Ledus.S1G096200
Ledus.S1	AUGUSTUS	transcript	9351862	9352372	.	-	.	transcript_id "Ledus.S1G096200.t1"; gene_id "Ledus.S1G096200"
Ledus.S1	AUGUSTUS	stop_codon	9351859	9351861	.	-	0	transcript_id "Ledus.S1G096200.t1"; gene_id "Ledus.S1G096200"
Ledus.S1	AUGUSTUS	CDS	9351862	9352175	0.88	-	2	transcript_id "Ledus.S1G096200.t1"; gene_id "Ledus.S1G096200"
Ledus.S1	AUGUSTUS	exon	9351862	9352175	.	-	.	transcript_id "Ledus.S1G096200.t1"; gene_id "Ledus.S1G096200"
Ledus.S1	AUGUSTUS	intron	9352176	9352269	.	-	.	transcript_id "Ledus.S1G096200.t1"; gene_id "Ledus.S1G096200"
Ledus.S1	AUGUSTUS	CDS	9352270	9352372	0.68	-	0	transcript_id "Ledus.S1G096200.t1"; gene_id "Ledus.S1G096200"
Ledus.S1	AUGUSTUS	exon	9352270	9352372	.	-	.	transcript_id "Ledus.S1G096200.t1"; gene_id "Ledus.S1G096200"
Ledus.S1	AUGUSTUS	start_codon	9352370	9352372	.	-	0	transcript_id "Ledus.S1G096200.t1"; gene_id "Ledus.S1G096200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8734.t1 is derived from g9764.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1678491	1679430	.	-	.	Ledus.S3G021100
Ledus.S3	AUGUSTUS	transcript	1678491	1679430	.	-	.	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	stop_codon	1678488	1678490	.	-	0	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	CDS	1678491	1678641	0.99	-	1	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	exon	1678491	1678641	.	-	.	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	intron	1678642	1678735	.	-	.	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	CDS	1678736	1678854	1	-	0	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	exon	1678736	1678854	.	-	.	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	intron	1678855	1678959	.	-	.	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	CDS	1678960	1679081	0.99	-	2	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	exon	1678960	1679081	.	-	.	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	intron	1679082	1679219	.	-	.	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	CDS	1679220	1679430	0.62	-	0	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	exon	1679220	1679430	.	-	.	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	start_codon	1679428	1679430	.	-	0	transcript_id "Ledus.S3G021100.t1"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	transcript	1678491	1679430	.	-	.	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	stop_codon	1678488	1678490	.	-	0	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	CDS	1678491	1678641	0.99	-	1	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	exon	1678491	1678641	.	-	.	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	intron	1678642	1678735	.	-	.	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	CDS	1678736	1678854	1	-	0	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	exon	1678736	1678854	.	-	.	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	intron	1678855	1678959	.	-	.	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	CDS	1678960	1679081	0.95	-	2	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	exon	1678960	1679081	.	-	.	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	intron	1679082	1679201	.	-	.	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	CDS	1679202	1679430	0.43	-	0	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	exon	1679202	1679430	.	-	.	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
Ledus.S3	AUGUSTUS	start_codon	1679428	1679430	.	-	0	transcript_id "Ledus.S3G021100.t2"; gene_id "Ledus.S3G021100"
# This transcript jg9521.t2 is derived from g10551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9522.t1 is derived from g10552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7571965	7576877	.	+	.	Ledus.S3G099900
Ledus.S3	AUGUSTUS	transcript	7571965	7576877	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	start_codon	7571965	7571967	.	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7571965	7572494	0.85	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7571965	7572494	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7572495	7572578	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7572579	7572723	1	+	1	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7572579	7572723	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7572724	7572819	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7572820	7572876	1	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7572820	7572876	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7572877	7572991	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7572992	7573216	0.98	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7572992	7573216	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7573217	7573306	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7573307	7573524	1	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7573307	7573524	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7573525	7573606	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7573607	7573673	1	+	1	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7573607	7573673	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7573674	7573782	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7573783	7573937	1	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7573783	7573937	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7573938	7574056	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7574057	7574321	1	+	1	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7574057	7574321	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7574322	7574491	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7574492	7574686	1	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7574492	7574686	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7574687	7574850	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7574851	7574930	1	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7574851	7574930	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7574931	7575053	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7575054	7575116	1	+	1	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7575054	7575116	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7575117	7575197	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7575198	7575279	1	+	1	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7575198	7575279	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7575280	7575397	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7575398	7575475	1	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7575398	7575475	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7575476	7575567	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7575568	7575663	1	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7575568	7575663	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7575664	7575747	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7575748	7575920	1	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7575748	7575920	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7575921	7576006	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7576007	7576184	1	+	1	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7576007	7576184	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7576185	7576278	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7576279	7576356	1	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7576279	7576356	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7576357	7576432	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7576433	7576564	1	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7576433	7576564	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	intron	7576565	7576664	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	CDS	7576665	7576877	1	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	exon	7576665	7576877	.	+	.	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
Ledus.S3	AUGUSTUS	stop_codon	7576878	7576880	.	+	0	transcript_id "Ledus.S3G099900.t1"; gene_id "Ledus.S3G099900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5972.t1 is derived from g3415.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28112000	28112372	.	+	.	Ledus.S1G339300
Ledus.S1	AUGUSTUS	transcript	28112000	28112372	.	+	.	transcript_id "Ledus.S1G339300.t1"; gene_id "Ledus.S1G339300"
Ledus.S1	AUGUSTUS	start_codon	28112000	28112002	.	+	0	transcript_id "Ledus.S1G339300.t1"; gene_id "Ledus.S1G339300"
Ledus.S1	AUGUSTUS	CDS	28112000	28112165	0.96	+	0	transcript_id "Ledus.S1G339300.t1"; gene_id "Ledus.S1G339300"
Ledus.S1	AUGUSTUS	exon	28112000	28112165	.	+	.	transcript_id "Ledus.S1G339300.t1"; gene_id "Ledus.S1G339300"
Ledus.S1	AUGUSTUS	intron	28112166	28112250	.	+	.	transcript_id "Ledus.S1G339300.t1"; gene_id "Ledus.S1G339300"
Ledus.S1	AUGUSTUS	CDS	28112251	28112372	0.92	+	2	transcript_id "Ledus.S1G339300.t1"; gene_id "Ledus.S1G339300"
Ledus.S1	AUGUSTUS	exon	28112251	28112372	.	+	.	transcript_id "Ledus.S1G339300.t1"; gene_id "Ledus.S1G339300"
Ledus.S1	AUGUSTUS	stop_codon	28112373	28112375	.	+	0	transcript_id "Ledus.S1G339300.t1"; gene_id "Ledus.S1G339300"
# This transcript jg9678.t2 is derived from g10708.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9679.t1 is derived from g10709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8986590	8987037	.	-	.	Ledus.S3G115600
Ledus.S3	AUGUSTUS	transcript	8986590	8987037	.	-	.	transcript_id "Ledus.S3G115600.t1"; gene_id "Ledus.S3G115600"
Ledus.S3	AUGUSTUS	stop_codon	8986587	8986589	.	-	0	transcript_id "Ledus.S3G115600.t1"; gene_id "Ledus.S3G115600"
Ledus.S3	AUGUSTUS	CDS	8986590	8986684	1	-	2	transcript_id "Ledus.S3G115600.t1"; gene_id "Ledus.S3G115600"
Ledus.S3	AUGUSTUS	exon	8986590	8986684	.	-	.	transcript_id "Ledus.S3G115600.t1"; gene_id "Ledus.S3G115600"
Ledus.S3	AUGUSTUS	intron	8986685	8986844	.	-	.	transcript_id "Ledus.S3G115600.t1"; gene_id "Ledus.S3G115600"
Ledus.S3	AUGUSTUS	CDS	8986845	8987037	1	-	0	transcript_id "Ledus.S3G115600.t1"; gene_id "Ledus.S3G115600"
Ledus.S3	AUGUSTUS	exon	8986845	8987037	.	-	.	transcript_id "Ledus.S3G115600.t1"; gene_id "Ledus.S3G115600"
Ledus.S3	AUGUSTUS	start_codon	8987035	8987037	.	-	0	transcript_id "Ledus.S3G115600.t1"; gene_id "Ledus.S3G115600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3977.t1 is derived from g1413.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13851924	13852211	.	-	.	Ledus.S1G139800
Ledus.S1	AUGUSTUS	transcript	13851924	13852211	.	-	.	transcript_id "Ledus.S1G139800.t1"; gene_id "Ledus.S1G139800"
Ledus.S1	AUGUSTUS	stop_codon	13851921	13851923	.	-	0	transcript_id "Ledus.S1G139800.t1"; gene_id "Ledus.S1G139800"
Ledus.S1	AUGUSTUS	CDS	13851924	13852211	0.25	-	0	transcript_id "Ledus.S1G139800.t1"; gene_id "Ledus.S1G139800"
Ledus.S1	AUGUSTUS	exon	13851924	13852211	.	-	.	transcript_id "Ledus.S1G139800.t1"; gene_id "Ledus.S1G139800"
Ledus.S1	AUGUSTUS	start_codon	13852209	13852211	.	-	0	transcript_id "Ledus.S1G139800.t1"; gene_id "Ledus.S1G139800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12646.t1 is derived from g6268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13595179	13599065	.	-	.	Ledus.S4G180200
Ledus.S4	AUGUSTUS	transcript	13595179	13599065	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	stop_codon	13595176	13595178	.	-	0	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13595179	13595280	1	-	0	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13595179	13595280	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13595281	13595374	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13595375	13595553	0.99	-	2	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13595375	13595553	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13595554	13595672	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13595673	13595929	1	-	1	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13595673	13595929	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13595930	13596140	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13596141	13596352	1	-	0	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13596141	13596352	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13596353	13596436	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13596437	13596789	1	-	2	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13596437	13596789	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13596790	13596930	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13596931	13596997	1	-	0	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13596931	13596997	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13596998	13597088	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13597089	13597834	1	-	2	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13597089	13597834	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13597835	13597931	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13597932	13598398	0.46	-	1	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13597932	13598398	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13598399	13598458	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13598459	13598539	0.97	-	1	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13598459	13598539	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13598540	13598638	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13598639	13598698	1	-	1	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13598639	13598698	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13598699	13598940	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13598941	13599065	0.76	-	0	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13598941	13599065	.	-	.	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	start_codon	13599063	13599065	.	-	0	transcript_id "Ledus.S4G180200.t1"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	transcript	13595179	13599048	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	stop_codon	13595176	13595178	.	-	0	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13595179	13595280	0.99	-	0	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13595179	13595280	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13595281	13595374	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13595375	13595553	0.99	-	2	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13595375	13595553	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13595554	13595672	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13595673	13595929	1	-	1	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13595673	13595929	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13595930	13596140	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13596141	13596352	1	-	0	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13596141	13596352	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13596353	13596436	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13596437	13596789	1	-	2	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13596437	13596789	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13596790	13596930	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13596931	13596997	1	-	0	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13596931	13596997	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13596998	13597088	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13597089	13597834	1	-	2	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13597089	13597834	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13597835	13597931	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13597932	13598398	0.56	-	1	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13597932	13598398	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13598399	13598458	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13598459	13598539	0.93	-	1	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13598459	13598539	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13598540	13598638	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13598639	13598698	0.85	-	1	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13598639	13598698	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13598699	13598878	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13598879	13598905	0.85	-	1	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13598879	13598905	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	intron	13598906	13598992	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	CDS	13598993	13599048	0.29	-	0	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	exon	13598993	13599048	.	-	.	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
Ledus.S4	AUGUSTUS	start_codon	13599046	13599048	.	-	0	transcript_id "Ledus.S4G180200.t2"; gene_id "Ledus.S4G180200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg3120.t1 is derived from g555.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6141103	6144795	.	-	.	Ledus.S1G054100
Ledus.S1	AUGUSTUS	transcript	6141674	6144795	.	-	.	transcript_id "Ledus.S1G054100.t1"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	stop_codon	6141671	6141673	.	-	0	transcript_id "Ledus.S1G054100.t1"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	CDS	6141674	6141681	0.59	-	2	transcript_id "Ledus.S1G054100.t1"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	exon	6141674	6141681	.	-	.	transcript_id "Ledus.S1G054100.t1"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	intron	6141682	6141752	.	-	.	transcript_id "Ledus.S1G054100.t1"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	CDS	6141753	6144795	0.86	-	0	transcript_id "Ledus.S1G054100.t1"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	exon	6141753	6144795	.	-	.	transcript_id "Ledus.S1G054100.t1"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	start_codon	6144793	6144795	.	-	0	transcript_id "Ledus.S1G054100.t1"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	transcript	6141103	6144795	.	-	.	transcript_id "Ledus.S1G054100.t2"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	stop_codon	6141100	6141102	.	-	0	transcript_id "Ledus.S1G054100.t2"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	CDS	6141103	6144795	0.99	-	0	transcript_id "Ledus.S1G054100.t2"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	exon	6141103	6144795	.	-	.	transcript_id "Ledus.S1G054100.t2"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	start_codon	6144793	6144795	.	-	0	transcript_id "Ledus.S1G054100.t2"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	transcript	6143052	6144795	.	-	.	transcript_id "Ledus.S1G054100.t3"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	stop_codon	6143049	6143051	.	-	0	transcript_id "Ledus.S1G054100.t3"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	CDS	6143052	6143082	0.45	-	1	transcript_id "Ledus.S1G054100.t3"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	exon	6143052	6143082	.	-	.	transcript_id "Ledus.S1G054100.t3"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	intron	6143083	6143161	.	-	.	transcript_id "Ledus.S1G054100.t3"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	CDS	6143162	6144795	0.48	-	0	transcript_id "Ledus.S1G054100.t3"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	exon	6143162	6144795	.	-	.	transcript_id "Ledus.S1G054100.t3"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	start_codon	6144793	6144795	.	-	0	transcript_id "Ledus.S1G054100.t3"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	transcript	6143216	6144795	.	-	.	transcript_id "Ledus.S1G054100.t4"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	stop_codon	6143213	6143215	.	-	0	transcript_id "Ledus.S1G054100.t4"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	CDS	6143216	6143247	0.37	-	2	transcript_id "Ledus.S1G054100.t4"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	exon	6143216	6143247	.	-	.	transcript_id "Ledus.S1G054100.t4"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	intron	6143248	6143297	.	-	.	transcript_id "Ledus.S1G054100.t4"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	CDS	6143298	6144795	0.37	-	0	transcript_id "Ledus.S1G054100.t4"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	exon	6143298	6144795	.	-	.	transcript_id "Ledus.S1G054100.t4"; gene_id "Ledus.S1G054100"
Ledus.S1	AUGUSTUS	start_codon	6144793	6144795	.	-	0	transcript_id "Ledus.S1G054100.t4"; gene_id "Ledus.S1G054100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4893.t1 is derived from g2331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20560358	20560921	.	-	.	Ledus.S1G231400
Ledus.S1	AUGUSTUS	transcript	20560358	20560921	.	-	.	transcript_id "Ledus.S1G231400.t1"; gene_id "Ledus.S1G231400"
Ledus.S1	AUGUSTUS	stop_codon	20560355	20560357	.	-	0	transcript_id "Ledus.S1G231400.t1"; gene_id "Ledus.S1G231400"
Ledus.S1	AUGUSTUS	CDS	20560358	20560921	0.99	-	0	transcript_id "Ledus.S1G231400.t1"; gene_id "Ledus.S1G231400"
Ledus.S1	AUGUSTUS	exon	20560358	20560921	.	-	.	transcript_id "Ledus.S1G231400.t1"; gene_id "Ledus.S1G231400"
Ledus.S1	AUGUSTUS	start_codon	20560919	20560921	.	-	0	transcript_id "Ledus.S1G231400.t1"; gene_id "Ledus.S1G231400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5139.t1 is derived from g2578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21908846	21909635	.	-	.	Ledus.S1G256000
Ledus.S1	AUGUSTUS	transcript	21908846	21909635	.	-	.	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	stop_codon	21908843	21908845	.	-	0	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	CDS	21908846	21909004	1	-	0	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	exon	21908846	21909004	.	-	.	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	intron	21909005	21909096	.	-	.	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	CDS	21909097	21909165	1	-	0	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	exon	21909097	21909165	.	-	.	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	intron	21909166	21909239	.	-	.	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	CDS	21909240	21909334	1	-	2	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	exon	21909240	21909334	.	-	.	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	intron	21909335	21909417	.	-	.	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	CDS	21909418	21909507	1	-	2	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	exon	21909418	21909507	.	-	.	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	intron	21909508	21909586	.	-	.	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	CDS	21909587	21909635	1	-	0	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	exon	21909587	21909635	.	-	.	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
Ledus.S1	AUGUSTUS	start_codon	21909633	21909635	.	-	0	transcript_id "Ledus.S1G256000.t1"; gene_id "Ledus.S1G256000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7010.t1 is derived from g6541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	795385	796150	.	+	.	Ledus.C7G007100
Ledus.C7	AUGUSTUS	transcript	795385	796150	.	+	.	transcript_id "Ledus.C7G007100.t1"; gene_id "Ledus.C7G007100"
Ledus.C7	AUGUSTUS	start_codon	795385	795387	.	+	0	transcript_id "Ledus.C7G007100.t1"; gene_id "Ledus.C7G007100"
Ledus.C7	AUGUSTUS	CDS	795385	795469	0.95	+	0	transcript_id "Ledus.C7G007100.t1"; gene_id "Ledus.C7G007100"
Ledus.C7	AUGUSTUS	exon	795385	795469	.	+	.	transcript_id "Ledus.C7G007100.t1"; gene_id "Ledus.C7G007100"
Ledus.C7	AUGUSTUS	intron	795470	795534	.	+	.	transcript_id "Ledus.C7G007100.t1"; gene_id "Ledus.C7G007100"
Ledus.C7	AUGUSTUS	CDS	795535	795705	0.64	+	2	transcript_id "Ledus.C7G007100.t1"; gene_id "Ledus.C7G007100"
Ledus.C7	AUGUSTUS	exon	795535	795705	.	+	.	transcript_id "Ledus.C7G007100.t1"; gene_id "Ledus.C7G007100"
Ledus.C7	AUGUSTUS	intron	795706	795917	.	+	.	transcript_id "Ledus.C7G007100.t1"; gene_id "Ledus.C7G007100"
Ledus.C7	AUGUSTUS	CDS	795918	796150	0.79	+	2	transcript_id "Ledus.C7G007100.t1"; gene_id "Ledus.C7G007100"
Ledus.C7	AUGUSTUS	exon	795918	796150	.	+	.	transcript_id "Ledus.C7G007100.t1"; gene_id "Ledus.C7G007100"
Ledus.C7	AUGUSTUS	stop_codon	796151	796153	.	+	0	transcript_id "Ledus.C7G007100.t1"; gene_id "Ledus.C7G007100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9363.t1 is derived from g10393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6377629	6379587	.	+	.	Ledus.S3G084000
Ledus.S3	AUGUSTUS	transcript	6377629	6379587	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	start_codon	6377629	6377631	.	+	0	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	CDS	6377629	6377764	0.95	+	0	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	exon	6377629	6377764	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	intron	6377765	6377858	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	CDS	6377859	6377973	1	+	2	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	exon	6377859	6377973	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	intron	6377974	6378112	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	CDS	6378113	6378203	1	+	1	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	exon	6378113	6378203	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	intron	6378204	6378284	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	CDS	6378285	6378430	1	+	0	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	exon	6378285	6378430	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	intron	6378431	6378510	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	CDS	6378511	6378730	1	+	1	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	exon	6378511	6378730	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	intron	6378731	6378825	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	CDS	6378826	6378934	1	+	0	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	exon	6378826	6378934	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	intron	6378935	6379108	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	CDS	6379109	6379277	1	+	2	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	exon	6379109	6379277	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	intron	6379278	6379415	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	CDS	6379416	6379587	0.93	+	1	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	exon	6379416	6379587	.	+	.	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
Ledus.S3	AUGUSTUS	stop_codon	6379588	6379590	.	+	0	transcript_id "Ledus.S3G084000.t1"; gene_id "Ledus.S3G084000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11967.t1 is derived from g5586.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8057287	8058378	.	+	.	Ledus.S4G112300
Ledus.S4	AUGUSTUS	transcript	8057287	8058378	.	+	.	transcript_id "Ledus.S4G112300.t1"; gene_id "Ledus.S4G112300"
Ledus.S4	AUGUSTUS	start_codon	8057287	8057289	.	+	0	transcript_id "Ledus.S4G112300.t1"; gene_id "Ledus.S4G112300"
Ledus.S4	AUGUSTUS	CDS	8057287	8058378	0.61	+	0	transcript_id "Ledus.S4G112300.t1"; gene_id "Ledus.S4G112300"
Ledus.S4	AUGUSTUS	exon	8057287	8058378	.	+	.	transcript_id "Ledus.S4G112300.t1"; gene_id "Ledus.S4G112300"
Ledus.S4	AUGUSTUS	stop_codon	8058379	8058381	.	+	0	transcript_id "Ledus.S4G112300.t1"; gene_id "Ledus.S4G112300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg20.t1 is derived from g9451.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C31	AUGUSTUS	gene	4973	5182	.	-	.	Ledus.C31G000100
Ledus.C31	AUGUSTUS	transcript	4973	5182	.	-	.	transcript_id "Ledus.C31G000100.t1"; gene_id "Ledus.C31G000100"
Ledus.C31	AUGUSTUS	stop_codon	4970	4972	.	-	0	transcript_id "Ledus.C31G000100.t1"; gene_id "Ledus.C31G000100"
Ledus.C31	AUGUSTUS	CDS	4973	5182	0.97	-	0	transcript_id "Ledus.C31G000100.t1"; gene_id "Ledus.C31G000100"
Ledus.C31	AUGUSTUS	exon	4973	5182	.	-	.	transcript_id "Ledus.C31G000100.t1"; gene_id "Ledus.C31G000100"
Ledus.C31	AUGUSTUS	start_codon	5180	5182	.	-	0	transcript_id "Ledus.C31G000100.t1"; gene_id "Ledus.C31G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6898.t1 is derived from g4342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35056740	35058909	.	-	.	Ledus.S1G431900
Ledus.S1	AUGUSTUS	transcript	35056740	35058909	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	stop_codon	35056737	35056739	.	-	0	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	CDS	35056740	35056910	0.97	-	0	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	exon	35056740	35056910	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	intron	35056911	35056988	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	CDS	35056989	35057081	1	-	0	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	exon	35056989	35057081	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	intron	35057082	35057188	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	CDS	35057189	35057255	0.99	-	1	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	exon	35057189	35057255	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	intron	35057256	35057364	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	CDS	35057365	35057470	0.9	-	2	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	exon	35057365	35057470	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	intron	35057471	35057562	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	CDS	35057563	35057647	1	-	0	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	exon	35057563	35057647	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	intron	35057648	35057727	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	CDS	35057728	35057819	1	-	2	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	exon	35057728	35057819	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	intron	35057820	35057974	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	CDS	35057975	35058097	1	-	2	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	exon	35057975	35058097	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	intron	35058098	35058224	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	CDS	35058225	35058330	1	-	0	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	exon	35058225	35058330	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	intron	35058331	35058420	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	CDS	35058421	35058530	1	-	2	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	exon	35058421	35058530	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	intron	35058531	35058630	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	CDS	35058631	35058722	1	-	1	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	exon	35058631	35058722	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	intron	35058723	35058805	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	CDS	35058806	35058909	0.99	-	0	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	exon	35058806	35058909	.	-	.	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
Ledus.S1	AUGUSTUS	start_codon	35058907	35058909	.	-	0	transcript_id "Ledus.S1G431900.t1"; gene_id "Ledus.S1G431900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2755.t1 is derived from g189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3185145	3185831	.	-	.	Ledus.S1G017600
Ledus.S1	AUGUSTUS	transcript	3185145	3185831	.	-	.	transcript_id "Ledus.S1G017600.t1"; gene_id "Ledus.S1G017600"
Ledus.S1	AUGUSTUS	stop_codon	3185142	3185144	.	-	0	transcript_id "Ledus.S1G017600.t1"; gene_id "Ledus.S1G017600"
Ledus.S1	AUGUSTUS	CDS	3185145	3185831	0.89	-	0	transcript_id "Ledus.S1G017600.t1"; gene_id "Ledus.S1G017600"
Ledus.S1	AUGUSTUS	exon	3185145	3185831	.	-	.	transcript_id "Ledus.S1G017600.t1"; gene_id "Ledus.S1G017600"
Ledus.S1	AUGUSTUS	start_codon	3185829	3185831	.	-	0	transcript_id "Ledus.S1G017600.t1"; gene_id "Ledus.S1G017600"
# This transcript jg12649.t2 is derived from g6271.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12649.t3 is derived from g6271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12650.t1 is derived from g6272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13613884	13615622	.	-	.	Ledus.S4G180600
Ledus.S4	AUGUSTUS	transcript	13613884	13615622	.	-	.	transcript_id "Ledus.S4G180600.t1"; gene_id "Ledus.S4G180600"
Ledus.S4	AUGUSTUS	stop_codon	13613881	13613883	.	-	0	transcript_id "Ledus.S4G180600.t1"; gene_id "Ledus.S4G180600"
Ledus.S4	AUGUSTUS	CDS	13613884	13615232	0.72	-	2	transcript_id "Ledus.S4G180600.t1"; gene_id "Ledus.S4G180600"
Ledus.S4	AUGUSTUS	exon	13613884	13615232	.	-	.	transcript_id "Ledus.S4G180600.t1"; gene_id "Ledus.S4G180600"
Ledus.S4	AUGUSTUS	intron	13615233	13615297	.	-	.	transcript_id "Ledus.S4G180600.t1"; gene_id "Ledus.S4G180600"
Ledus.S4	AUGUSTUS	CDS	13615298	13615622	1	-	0	transcript_id "Ledus.S4G180600.t1"; gene_id "Ledus.S4G180600"
Ledus.S4	AUGUSTUS	exon	13615298	13615622	.	-	.	transcript_id "Ledus.S4G180600.t1"; gene_id "Ledus.S4G180600"
Ledus.S4	AUGUSTUS	start_codon	13615620	13615622	.	-	0	transcript_id "Ledus.S4G180600.t1"; gene_id "Ledus.S4G180600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9174.t1 is derived from g10204.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5249308	5250668	.	-	.	Ledus.S3G065100
Ledus.S3	AUGUSTUS	transcript	5249308	5250668	.	-	.	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	stop_codon	5249305	5249307	.	-	0	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	CDS	5249308	5249435	0.78	-	2	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	exon	5249308	5249435	.	-	.	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	intron	5249436	5249755	.	-	.	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	CDS	5249756	5249883	0.79	-	1	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	exon	5249756	5249883	.	-	.	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	intron	5249884	5249967	.	-	.	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	CDS	5249968	5250032	1	-	0	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	exon	5249968	5250032	.	-	.	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	intron	5250033	5250098	.	-	.	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	CDS	5250099	5250212	1	-	0	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	exon	5250099	5250212	.	-	.	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	intron	5250213	5250305	.	-	.	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	CDS	5250306	5250447	0.97	-	1	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	exon	5250306	5250447	.	-	.	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	intron	5250448	5250594	.	-	.	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	CDS	5250595	5250668	0.59	-	0	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	exon	5250595	5250668	.	-	.	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	start_codon	5250666	5250668	.	-	0	transcript_id "Ledus.S3G065100.t1"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	transcript	5249308	5250668	.	-	.	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	stop_codon	5249305	5249307	.	-	0	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	CDS	5249308	5249435	0.77	-	2	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	exon	5249308	5249435	.	-	.	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	intron	5249436	5249755	.	-	.	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	CDS	5249756	5249883	0.71	-	1	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	exon	5249756	5249883	.	-	.	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	intron	5249884	5249967	.	-	.	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	CDS	5249968	5250032	1	-	0	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	exon	5249968	5250032	.	-	.	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	intron	5250033	5250098	.	-	.	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	CDS	5250099	5250212	1	-	0	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	exon	5250099	5250212	.	-	.	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	intron	5250213	5250347	.	-	.	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	CDS	5250348	5250447	1	-	1	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	exon	5250348	5250447	.	-	.	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	intron	5250448	5250594	.	-	.	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	CDS	5250595	5250668	0.65	-	0	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	exon	5250595	5250668	.	-	.	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
Ledus.S3	AUGUSTUS	start_codon	5250666	5250668	.	-	0	transcript_id "Ledus.S3G065100.t2"; gene_id "Ledus.S3G065100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5049.t1 is derived from g2488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21311919	21312332	.	+	.	Ledus.S1G247000
Ledus.S1	AUGUSTUS	transcript	21311919	21312332	.	+	.	transcript_id "Ledus.S1G247000.t1"; gene_id "Ledus.S1G247000"
Ledus.S1	AUGUSTUS	start_codon	21311919	21311921	.	+	0	transcript_id "Ledus.S1G247000.t1"; gene_id "Ledus.S1G247000"
Ledus.S1	AUGUSTUS	CDS	21311919	21312332	0.89	+	0	transcript_id "Ledus.S1G247000.t1"; gene_id "Ledus.S1G247000"
Ledus.S1	AUGUSTUS	exon	21311919	21312332	.	+	.	transcript_id "Ledus.S1G247000.t1"; gene_id "Ledus.S1G247000"
Ledus.S1	AUGUSTUS	stop_codon	21312333	21312335	.	+	0	transcript_id "Ledus.S1G247000.t1"; gene_id "Ledus.S1G247000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12118.t1 is derived from g5737.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9636226	9637149	.	-	.	Ledus.S4G127400
Ledus.S4	AUGUSTUS	transcript	9636226	9637149	.	-	.	transcript_id "Ledus.S4G127400.t1"; gene_id "Ledus.S4G127400"
Ledus.S4	AUGUSTUS	stop_codon	9636223	9636225	.	-	0	transcript_id "Ledus.S4G127400.t1"; gene_id "Ledus.S4G127400"
Ledus.S4	AUGUSTUS	CDS	9636226	9636681	0.59	-	0	transcript_id "Ledus.S4G127400.t1"; gene_id "Ledus.S4G127400"
Ledus.S4	AUGUSTUS	exon	9636226	9636681	.	-	.	transcript_id "Ledus.S4G127400.t1"; gene_id "Ledus.S4G127400"
Ledus.S4	AUGUSTUS	intron	9636682	9636765	.	-	.	transcript_id "Ledus.S4G127400.t1"; gene_id "Ledus.S4G127400"
Ledus.S4	AUGUSTUS	CDS	9636766	9637149	0.55	-	0	transcript_id "Ledus.S4G127400.t1"; gene_id "Ledus.S4G127400"
Ledus.S4	AUGUSTUS	exon	9636766	9637149	.	-	.	transcript_id "Ledus.S4G127400.t1"; gene_id "Ledus.S4G127400"
Ledus.S4	AUGUSTUS	start_codon	9637147	9637149	.	-	0	transcript_id "Ledus.S4G127400.t1"; gene_id "Ledus.S4G127400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8696.t1 is derived from g9726.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1441391	1442310	.	+	.	Ledus.S3G017300
Ledus.S3	AUGUSTUS	transcript	1441391	1442310	.	+	.	transcript_id "Ledus.S3G017300.t1"; gene_id "Ledus.S3G017300"
Ledus.S3	AUGUSTUS	start_codon	1441391	1441393	.	+	0	transcript_id "Ledus.S3G017300.t1"; gene_id "Ledus.S3G017300"
Ledus.S3	AUGUSTUS	CDS	1441391	1441846	0.39	+	0	transcript_id "Ledus.S3G017300.t1"; gene_id "Ledus.S3G017300"
Ledus.S3	AUGUSTUS	exon	1441391	1441846	.	+	.	transcript_id "Ledus.S3G017300.t1"; gene_id "Ledus.S3G017300"
Ledus.S3	AUGUSTUS	intron	1441847	1441947	.	+	.	transcript_id "Ledus.S3G017300.t1"; gene_id "Ledus.S3G017300"
Ledus.S3	AUGUSTUS	CDS	1441948	1442138	0.4	+	0	transcript_id "Ledus.S3G017300.t1"; gene_id "Ledus.S3G017300"
Ledus.S3	AUGUSTUS	exon	1441948	1442138	.	+	.	transcript_id "Ledus.S3G017300.t1"; gene_id "Ledus.S3G017300"
Ledus.S3	AUGUSTUS	intron	1442139	1442282	.	+	.	transcript_id "Ledus.S3G017300.t1"; gene_id "Ledus.S3G017300"
Ledus.S3	AUGUSTUS	CDS	1442283	1442310	0.87	+	1	transcript_id "Ledus.S3G017300.t1"; gene_id "Ledus.S3G017300"
Ledus.S3	AUGUSTUS	exon	1442283	1442310	.	+	.	transcript_id "Ledus.S3G017300.t1"; gene_id "Ledus.S3G017300"
Ledus.S3	AUGUSTUS	stop_codon	1442311	1442313	.	+	0	transcript_id "Ledus.S3G017300.t1"; gene_id "Ledus.S3G017300"
# This transcript jg4322.t2 is derived from g1758.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4323.t1 is derived from g1759.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16302508	16302992	.	+	.	Ledus.S1G174400
Ledus.S1	AUGUSTUS	transcript	16302508	16302992	.	+	.	transcript_id "Ledus.S1G174400.t1"; gene_id "Ledus.S1G174400"
Ledus.S1	AUGUSTUS	start_codon	16302508	16302510	.	+	0	transcript_id "Ledus.S1G174400.t1"; gene_id "Ledus.S1G174400"
Ledus.S1	AUGUSTUS	CDS	16302508	16302668	0.37	+	0	transcript_id "Ledus.S1G174400.t1"; gene_id "Ledus.S1G174400"
Ledus.S1	AUGUSTUS	exon	16302508	16302668	.	+	.	transcript_id "Ledus.S1G174400.t1"; gene_id "Ledus.S1G174400"
Ledus.S1	AUGUSTUS	intron	16302669	16302784	.	+	.	transcript_id "Ledus.S1G174400.t1"; gene_id "Ledus.S1G174400"
Ledus.S1	AUGUSTUS	CDS	16302785	16302992	0.44	+	1	transcript_id "Ledus.S1G174400.t1"; gene_id "Ledus.S1G174400"
Ledus.S1	AUGUSTUS	exon	16302785	16302992	.	+	.	transcript_id "Ledus.S1G174400.t1"; gene_id "Ledus.S1G174400"
Ledus.S1	AUGUSTUS	stop_codon	16302993	16302995	.	+	0	transcript_id "Ledus.S1G174400.t1"; gene_id "Ledus.S1G174400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8947.t1 is derived from g9977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3384034	3385195	.	-	.	Ledus.S3G042400
Ledus.S3	AUGUSTUS	transcript	3384034	3385195	.	-	.	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	stop_codon	3384031	3384033	.	-	0	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	CDS	3384034	3384087	1	-	0	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	exon	3384034	3384087	.	-	.	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	intron	3384088	3384169	.	-	.	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	CDS	3384170	3384277	1	-	0	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	exon	3384170	3384277	.	-	.	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	intron	3384278	3384354	.	-	.	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	CDS	3384355	3384698	1	-	2	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	exon	3384355	3384698	.	-	.	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	intron	3384699	3384774	.	-	.	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	CDS	3384775	3385195	0.98	-	0	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	exon	3384775	3385195	.	-	.	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
Ledus.S3	AUGUSTUS	start_codon	3385193	3385195	.	-	0	transcript_id "Ledus.S3G042400.t1"; gene_id "Ledus.S3G042400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12620.t1 is derived from g6242.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13255105	13258032	.	+	.	Ledus.S4G177600
Ledus.S4	AUGUSTUS	transcript	13255105	13258032	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	start_codon	13255105	13255107	.	+	0	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	CDS	13255105	13255185	0.95	+	0	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	exon	13255105	13255185	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	intron	13255186	13255324	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	CDS	13255325	13255505	1	+	0	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	exon	13255325	13255505	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	intron	13255506	13255654	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	CDS	13255655	13255814	1	+	2	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	exon	13255655	13255814	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	intron	13255815	13255951	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	CDS	13255952	13256424	1	+	1	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	exon	13255952	13256424	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	intron	13256425	13256566	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	CDS	13256567	13257103	1	+	2	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	exon	13256567	13257103	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	intron	13257104	13257240	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	CDS	13257241	13257301	1	+	2	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	exon	13257241	13257301	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	intron	13257302	13257403	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	CDS	13257404	13257494	0.77	+	1	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	exon	13257404	13257494	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	intron	13257495	13257752	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	CDS	13257753	13257873	0.8	+	0	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	exon	13257753	13257873	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	intron	13257874	13258012	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	CDS	13258013	13258032	0.95	+	2	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	exon	13258013	13258032	.	+	.	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
Ledus.S4	AUGUSTUS	stop_codon	13258033	13258035	.	+	0	transcript_id "Ledus.S4G177600.t1"; gene_id "Ledus.S4G177600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13062.t1 is derived from g6872.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4739538	4740024	.	+	.	Ledus.S6G012400
Ledus.S6	AUGUSTUS	transcript	4739538	4740024	.	+	.	transcript_id "Ledus.S6G012400.t1"; gene_id "Ledus.S6G012400"
Ledus.S6	AUGUSTUS	start_codon	4739538	4739540	.	+	0	transcript_id "Ledus.S6G012400.t1"; gene_id "Ledus.S6G012400"
Ledus.S6	AUGUSTUS	CDS	4739538	4739601	0.8	+	0	transcript_id "Ledus.S6G012400.t1"; gene_id "Ledus.S6G012400"
Ledus.S6	AUGUSTUS	exon	4739538	4739601	.	+	.	transcript_id "Ledus.S6G012400.t1"; gene_id "Ledus.S6G012400"
Ledus.S6	AUGUSTUS	intron	4739602	4739758	.	+	.	transcript_id "Ledus.S6G012400.t1"; gene_id "Ledus.S6G012400"
Ledus.S6	AUGUSTUS	CDS	4739759	4740024	0.5	+	2	transcript_id "Ledus.S6G012400.t1"; gene_id "Ledus.S6G012400"
Ledus.S6	AUGUSTUS	exon	4739759	4740024	.	+	.	transcript_id "Ledus.S6G012400.t1"; gene_id "Ledus.S6G012400"
Ledus.S6	AUGUSTUS	stop_codon	4740025	4740027	.	+	0	transcript_id "Ledus.S6G012400.t1"; gene_id "Ledus.S6G012400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12110.t1 is derived from g5729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9543958	9546733	.	-	.	Ledus.S4G126600
Ledus.S4	AUGUSTUS	transcript	9543958	9546733	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	stop_codon	9543955	9543957	.	-	0	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	CDS	9543958	9544103	0.92	-	2	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	exon	9543958	9544103	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	intron	9544104	9544187	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	CDS	9544188	9544306	0.98	-	1	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	exon	9544188	9544306	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	intron	9544307	9544423	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	CDS	9544424	9544496	1	-	2	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	exon	9544424	9544496	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	intron	9544497	9544582	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	CDS	9544583	9544753	0.84	-	2	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	exon	9544583	9544753	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	intron	9544754	9545069	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	CDS	9545070	9545290	0.85	-	1	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	exon	9545070	9545290	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	intron	9545291	9545384	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	CDS	9545385	9545555	1	-	1	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	exon	9545385	9545555	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	intron	9545556	9545638	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	CDS	9545639	9545805	1	-	0	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	exon	9545639	9545805	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	intron	9545806	9545945	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	CDS	9545946	9546039	1	-	1	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	exon	9545946	9546039	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	intron	9546040	9546117	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	CDS	9546118	9546326	1	-	0	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	exon	9546118	9546326	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	intron	9546327	9546419	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	CDS	9546420	9546571	1	-	2	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	exon	9546420	9546571	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	intron	9546572	9546663	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	CDS	9546664	9546733	0.38	-	0	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	exon	9546664	9546733	.	-	.	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
Ledus.S4	AUGUSTUS	start_codon	9546731	9546733	.	-	0	transcript_id "Ledus.S4G126600.t1"; gene_id "Ledus.S4G126600"
# This transcript jg51.t2 is derived from g9464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg51.t3 is derived from g9464.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg52.t1 is derived from g9465.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	139923	141692	.	+	.	Ledus.C8G001200
Ledus.C8	AUGUSTUS	transcript	139923	141692	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	start_codon	139923	139925	.	+	0	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	CDS	139923	140153	0.64	+	0	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	exon	139923	140153	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	intron	140154	140240	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	CDS	140241	140400	1	+	0	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	exon	140241	140400	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	intron	140401	140479	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	CDS	140480	140665	1	+	2	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	exon	140480	140665	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	intron	140666	140731	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	CDS	140732	140934	1	+	2	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	exon	140732	140934	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	intron	140935	141006	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	CDS	141007	141158	1	+	0	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	exon	141007	141158	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	intron	141159	141249	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	CDS	141250	141496	1	+	1	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	exon	141250	141496	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	intron	141497	141581	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	CDS	141582	141692	0.72	+	0	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	exon	141582	141692	.	+	.	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
Ledus.C8	AUGUSTUS	stop_codon	141693	141695	.	+	0	transcript_id "Ledus.C8G001200.t1"; gene_id "Ledus.C8G001200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10321.t1 is derived from g11351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14223912	14224679	.	-	.	Ledus.S3G179800
Ledus.S3	AUGUSTUS	transcript	14223912	14224679	.	-	.	transcript_id "Ledus.S3G179800.t1"; gene_id "Ledus.S3G179800"
Ledus.S3	AUGUSTUS	stop_codon	14223909	14223911	.	-	0	transcript_id "Ledus.S3G179800.t1"; gene_id "Ledus.S3G179800"
Ledus.S3	AUGUSTUS	CDS	14223912	14224155	1	-	1	transcript_id "Ledus.S3G179800.t1"; gene_id "Ledus.S3G179800"
Ledus.S3	AUGUSTUS	exon	14223912	14224155	.	-	.	transcript_id "Ledus.S3G179800.t1"; gene_id "Ledus.S3G179800"
Ledus.S3	AUGUSTUS	intron	14224156	14224323	.	-	.	transcript_id "Ledus.S3G179800.t1"; gene_id "Ledus.S3G179800"
Ledus.S3	AUGUSTUS	CDS	14224324	14224679	0.58	-	0	transcript_id "Ledus.S3G179800.t1"; gene_id "Ledus.S3G179800"
Ledus.S3	AUGUSTUS	exon	14224324	14224679	.	-	.	transcript_id "Ledus.S3G179800.t1"; gene_id "Ledus.S3G179800"
Ledus.S3	AUGUSTUS	start_codon	14224677	14224679	.	-	0	transcript_id "Ledus.S3G179800.t1"; gene_id "Ledus.S3G179800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg315.t1 is derived from g7176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1595097	1597283	.	+	.	Ledus.S2G019700
Ledus.S2	AUGUSTUS	transcript	1595097	1597283	.	+	.	transcript_id "Ledus.S2G019700.t1"; gene_id "Ledus.S2G019700"
Ledus.S2	AUGUSTUS	start_codon	1595097	1595099	.	+	0	transcript_id "Ledus.S2G019700.t1"; gene_id "Ledus.S2G019700"
Ledus.S2	AUGUSTUS	CDS	1595097	1595186	0.36	+	0	transcript_id "Ledus.S2G019700.t1"; gene_id "Ledus.S2G019700"
Ledus.S2	AUGUSTUS	exon	1595097	1595186	.	+	.	transcript_id "Ledus.S2G019700.t1"; gene_id "Ledus.S2G019700"
Ledus.S2	AUGUSTUS	intron	1595187	1595260	.	+	.	transcript_id "Ledus.S2G019700.t1"; gene_id "Ledus.S2G019700"
Ledus.S2	AUGUSTUS	CDS	1595261	1595444	0.94	+	0	transcript_id "Ledus.S2G019700.t1"; gene_id "Ledus.S2G019700"
Ledus.S2	AUGUSTUS	exon	1595261	1595444	.	+	.	transcript_id "Ledus.S2G019700.t1"; gene_id "Ledus.S2G019700"
Ledus.S2	AUGUSTUS	intron	1595445	1595532	.	+	.	transcript_id "Ledus.S2G019700.t1"; gene_id "Ledus.S2G019700"
Ledus.S2	AUGUSTUS	CDS	1595533	1597283	0.85	+	2	transcript_id "Ledus.S2G019700.t1"; gene_id "Ledus.S2G019700"
Ledus.S2	AUGUSTUS	exon	1595533	1597283	.	+	.	transcript_id "Ledus.S2G019700.t1"; gene_id "Ledus.S2G019700"
Ledus.S2	AUGUSTUS	stop_codon	1597284	1597286	.	+	0	transcript_id "Ledus.S2G019700.t1"; gene_id "Ledus.S2G019700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7490.t1 is derived from g12161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3411073	3411282	.	+	.	Ledus.S5G026800
Ledus.S5	AUGUSTUS	transcript	3411073	3411282	.	+	.	transcript_id "Ledus.S5G026800.t1"; gene_id "Ledus.S5G026800"
Ledus.S5	AUGUSTUS	start_codon	3411073	3411075	.	+	0	transcript_id "Ledus.S5G026800.t1"; gene_id "Ledus.S5G026800"
Ledus.S5	AUGUSTUS	CDS	3411073	3411282	0.84	+	0	transcript_id "Ledus.S5G026800.t1"; gene_id "Ledus.S5G026800"
Ledus.S5	AUGUSTUS	exon	3411073	3411282	.	+	.	transcript_id "Ledus.S5G026800.t1"; gene_id "Ledus.S5G026800"
Ledus.S5	AUGUSTUS	stop_codon	3411283	3411285	.	+	0	transcript_id "Ledus.S5G026800.t1"; gene_id "Ledus.S5G026800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5769.t1 is derived from g3210.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26669054	26670769	.	+	.	Ledus.S1G319000
Ledus.S1	AUGUSTUS	transcript	26669054	26670769	.	+	.	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	start_codon	26669054	26669056	.	+	0	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	CDS	26669054	26669799	1	+	0	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	exon	26669054	26669799	.	+	.	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	intron	26669800	26669877	.	+	.	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	CDS	26669878	26669947	1	+	1	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	exon	26669878	26669947	.	+	.	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	intron	26669948	26670178	.	+	.	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	CDS	26670179	26670419	1	+	0	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	exon	26670179	26670419	.	+	.	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	intron	26670420	26670554	.	+	.	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	CDS	26670555	26670625	1	+	2	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	exon	26670555	26670625	.	+	.	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	intron	26670626	26670715	.	+	.	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	CDS	26670716	26670769	0.98	+	0	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	exon	26670716	26670769	.	+	.	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
Ledus.S1	AUGUSTUS	stop_codon	26670770	26670772	.	+	0	transcript_id "Ledus.S1G319000.t1"; gene_id "Ledus.S1G319000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12893.t1 is derived from g4385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	15969	16648	.	+	.	Ledus.C9G000100
Ledus.C9	AUGUSTUS	transcript	15969	16648	.	+	.	transcript_id "Ledus.C9G000100.t1"; gene_id "Ledus.C9G000100"
Ledus.C9	AUGUSTUS	start_codon	15969	15971	.	+	0	transcript_id "Ledus.C9G000100.t1"; gene_id "Ledus.C9G000100"
Ledus.C9	AUGUSTUS	CDS	15969	16507	0.79	+	0	transcript_id "Ledus.C9G000100.t1"; gene_id "Ledus.C9G000100"
Ledus.C9	AUGUSTUS	exon	15969	16507	.	+	.	transcript_id "Ledus.C9G000100.t1"; gene_id "Ledus.C9G000100"
Ledus.C9	AUGUSTUS	intron	16508	16623	.	+	.	transcript_id "Ledus.C9G000100.t1"; gene_id "Ledus.C9G000100"
Ledus.C9	AUGUSTUS	CDS	16624	16648	0.5	+	1	transcript_id "Ledus.C9G000100.t1"; gene_id "Ledus.C9G000100"
Ledus.C9	AUGUSTUS	exon	16624	16648	.	+	.	transcript_id "Ledus.C9G000100.t1"; gene_id "Ledus.C9G000100"
Ledus.C9	AUGUSTUS	stop_codon	16649	16651	.	+	0	transcript_id "Ledus.C9G000100.t1"; gene_id "Ledus.C9G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8869.t1 is derived from g9899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2606268	2609300	.	+	.	Ledus.S3G034600
Ledus.S3	AUGUSTUS	transcript	2606268	2609300	.	+	.	transcript_id "Ledus.S3G034600.t1"; gene_id "Ledus.S3G034600"
Ledus.S3	AUGUSTUS	start_codon	2606268	2606270	.	+	0	transcript_id "Ledus.S3G034600.t1"; gene_id "Ledus.S3G034600"
Ledus.S3	AUGUSTUS	CDS	2606268	2609300	1	+	0	transcript_id "Ledus.S3G034600.t1"; gene_id "Ledus.S3G034600"
Ledus.S3	AUGUSTUS	exon	2606268	2609300	.	+	.	transcript_id "Ledus.S3G034600.t1"; gene_id "Ledus.S3G034600"
Ledus.S3	AUGUSTUS	stop_codon	2609301	2609303	.	+	0	transcript_id "Ledus.S3G034600.t1"; gene_id "Ledus.S3G034600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg446.t1 is derived from g7307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2650810	2655132	.	-	.	Ledus.S2G032800
Ledus.S2	AUGUSTUS	transcript	2650810	2655132	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	stop_codon	2650807	2650809	.	-	0	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	CDS	2650810	2650943	0.99	-	2	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	exon	2650810	2650943	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	intron	2650944	2651079	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	CDS	2651080	2651179	1	-	0	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	exon	2651080	2651179	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	intron	2651180	2651337	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	CDS	2651338	2651433	1	-	0	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	exon	2651338	2651433	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	intron	2651434	2651537	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	CDS	2651538	2651717	1	-	0	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	exon	2651538	2651717	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	intron	2651718	2652038	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	CDS	2652039	2652125	1	-	0	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	exon	2652039	2652125	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	intron	2652126	2652326	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	CDS	2652327	2652383	1	-	0	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	exon	2652327	2652383	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	intron	2652384	2652569	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	CDS	2652570	2652635	0.89	-	0	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	exon	2652570	2652635	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	intron	2652636	2652741	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	CDS	2652742	2654058	0.99	-	0	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	exon	2652742	2654058	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	intron	2654059	2654229	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	CDS	2654230	2654458	1	-	1	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	exon	2654230	2654458	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	intron	2654459	2654548	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	CDS	2654549	2654979	1	-	0	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	exon	2654549	2654979	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	intron	2654980	2655057	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	CDS	2655058	2655132	0.97	-	0	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	exon	2655058	2655132	.	-	.	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
Ledus.S2	AUGUSTUS	start_codon	2655130	2655132	.	-	0	transcript_id "Ledus.S2G032800.t1"; gene_id "Ledus.S2G032800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5738.t1 is derived from g3177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26419427	26419946	.	-	.	Ledus.S1G315900
Ledus.S1	AUGUSTUS	transcript	26419427	26419946	.	-	.	transcript_id "Ledus.S1G315900.t1"; gene_id "Ledus.S1G315900"
Ledus.S1	AUGUSTUS	stop_codon	26419424	26419426	.	-	0	transcript_id "Ledus.S1G315900.t1"; gene_id "Ledus.S1G315900"
Ledus.S1	AUGUSTUS	CDS	26419427	26419607	0.79	-	1	transcript_id "Ledus.S1G315900.t1"; gene_id "Ledus.S1G315900"
Ledus.S1	AUGUSTUS	exon	26419427	26419607	.	-	.	transcript_id "Ledus.S1G315900.t1"; gene_id "Ledus.S1G315900"
Ledus.S1	AUGUSTUS	intron	26419608	26419776	.	-	.	transcript_id "Ledus.S1G315900.t1"; gene_id "Ledus.S1G315900"
Ledus.S1	AUGUSTUS	CDS	26419777	26419946	0.25	-	0	transcript_id "Ledus.S1G315900.t1"; gene_id "Ledus.S1G315900"
Ledus.S1	AUGUSTUS	exon	26419777	26419946	.	-	.	transcript_id "Ledus.S1G315900.t1"; gene_id "Ledus.S1G315900"
Ledus.S1	AUGUSTUS	start_codon	26419944	26419946	.	-	0	transcript_id "Ledus.S1G315900.t1"; gene_id "Ledus.S1G315900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6474.t1 is derived from g3917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31473733	31476995	.	-	.	Ledus.S1G389500
Ledus.S1	AUGUSTUS	transcript	31473733	31476995	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	stop_codon	31473730	31473732	.	-	0	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	CDS	31473733	31473804	1	-	0	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	exon	31473733	31473804	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	intron	31473805	31473895	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	CDS	31473896	31474012	1	-	0	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	exon	31473896	31474012	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	intron	31474013	31474149	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	CDS	31474150	31474197	1	-	0	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	exon	31474150	31474197	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	intron	31474198	31474381	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	CDS	31474382	31474405	1	-	0	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	exon	31474382	31474405	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	intron	31474406	31474464	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	CDS	31474465	31474503	1	-	0	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	exon	31474465	31474503	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	intron	31474504	31474693	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	CDS	31474694	31475176	1	-	0	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	exon	31474694	31475176	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	intron	31475177	31475334	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	CDS	31475335	31475465	1	-	2	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	exon	31475335	31475465	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	intron	31475466	31475678	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	CDS	31475679	31475841	1	-	0	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	exon	31475679	31475841	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	intron	31475842	31476101	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	CDS	31476102	31476995	0.53	-	0	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	exon	31476102	31476995	.	-	.	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
Ledus.S1	AUGUSTUS	start_codon	31476993	31476995	.	-	0	transcript_id "Ledus.S1G389500.t1"; gene_id "Ledus.S1G389500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11227.t1 is derived from g4845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2820766	2821737	.	-	.	Ledus.S4G038300
Ledus.S4	AUGUSTUS	transcript	2820766	2821737	.	-	.	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	stop_codon	2820763	2820765	.	-	0	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	CDS	2820766	2820778	1	-	1	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	exon	2820766	2820778	.	-	.	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	intron	2820779	2820971	.	-	.	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	CDS	2820972	2821081	1	-	0	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	exon	2820972	2821081	.	-	.	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	intron	2821082	2821278	.	-	.	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	CDS	2821279	2821338	0.99	-	0	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	exon	2821279	2821338	.	-	.	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	intron	2821339	2821425	.	-	.	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	CDS	2821426	2821484	0.98	-	2	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	exon	2821426	2821484	.	-	.	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	intron	2821485	2821724	.	-	.	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	CDS	2821725	2821737	0.92	-	0	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	exon	2821725	2821737	.	-	.	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
Ledus.S4	AUGUSTUS	start_codon	2821735	2821737	.	-	0	transcript_id "Ledus.S4G038300.t1"; gene_id "Ledus.S4G038300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10119.t1 is derived from g11149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12901428	12901625	.	+	.	Ledus.S3G159600
Ledus.S3	AUGUSTUS	transcript	12901428	12901625	.	+	.	transcript_id "Ledus.S3G159600.t1"; gene_id "Ledus.S3G159600"
Ledus.S3	AUGUSTUS	start_codon	12901428	12901430	.	+	0	transcript_id "Ledus.S3G159600.t1"; gene_id "Ledus.S3G159600"
Ledus.S3	AUGUSTUS	CDS	12901428	12901625	0.81	+	0	transcript_id "Ledus.S3G159600.t1"; gene_id "Ledus.S3G159600"
Ledus.S3	AUGUSTUS	exon	12901428	12901625	.	+	.	transcript_id "Ledus.S3G159600.t1"; gene_id "Ledus.S3G159600"
Ledus.S3	AUGUSTUS	stop_codon	12901626	12901628	.	+	0	transcript_id "Ledus.S3G159600.t1"; gene_id "Ledus.S3G159600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6056.t1 is derived from g3499.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28744773	28746574	.	-	.	Ledus.S1G347700
Ledus.S1	AUGUSTUS	transcript	28744773	28746574	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	stop_codon	28744770	28744772	.	-	0	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	CDS	28744773	28744913	1	-	0	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	exon	28744773	28744913	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	intron	28744914	28745034	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	CDS	28745035	28745152	1	-	1	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	exon	28745035	28745152	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	intron	28745153	28745263	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	CDS	28745264	28745385	1	-	0	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	exon	28745264	28745385	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	intron	28745386	28745504	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	CDS	28745505	28745566	1	-	2	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	exon	28745505	28745566	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	intron	28745567	28745675	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	CDS	28745676	28745844	1	-	0	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	exon	28745676	28745844	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	intron	28745845	28745942	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	CDS	28745943	28746116	1	-	0	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	exon	28745943	28746116	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	intron	28746117	28746349	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	CDS	28746350	28746574	1	-	0	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	exon	28746350	28746574	.	-	.	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
Ledus.S1	AUGUSTUS	start_codon	28746572	28746574	.	-	0	transcript_id "Ledus.S1G347700.t1"; gene_id "Ledus.S1G347700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5368.t1 is derived from g2807.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23768751	23769860	.	-	.	Ledus.S1G278900
Ledus.S1	AUGUSTUS	transcript	23768751	23769860	.	-	.	transcript_id "Ledus.S1G278900.t1"; gene_id "Ledus.S1G278900"
Ledus.S1	AUGUSTUS	stop_codon	23768748	23768750	.	-	0	transcript_id "Ledus.S1G278900.t1"; gene_id "Ledus.S1G278900"
Ledus.S1	AUGUSTUS	CDS	23768751	23769860	0.38	-	0	transcript_id "Ledus.S1G278900.t1"; gene_id "Ledus.S1G278900"
Ledus.S1	AUGUSTUS	exon	23768751	23769860	.	-	.	transcript_id "Ledus.S1G278900.t1"; gene_id "Ledus.S1G278900"
Ledus.S1	AUGUSTUS	start_codon	23769858	23769860	.	-	0	transcript_id "Ledus.S1G278900.t1"; gene_id "Ledus.S1G278900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3334.t1 is derived from g769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7539619	7546330	.	+	.	Ledus.S1G075500
Ledus.S1	AUGUSTUS	transcript	7539619	7546330	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	start_codon	7539619	7539621	.	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7539619	7539723	0.5	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7539619	7539723	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7539724	7539820	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7539821	7539859	1	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7539821	7539859	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7539860	7539989	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7539990	7540082	1	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7539990	7540082	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7540083	7540230	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7540231	7540288	1	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7540231	7540288	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7540289	7540424	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7540425	7540487	1	+	2	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7540425	7540487	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7540488	7540671	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7540672	7540705	1	+	2	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7540672	7540705	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7540706	7540814	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7540815	7540893	0.99	+	1	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7540815	7540893	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7540894	7541006	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7541007	7541039	0.96	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7541007	7541039	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7541040	7541147	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7541148	7541228	0.99	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7541148	7541228	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7541229	7541321	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7541322	7541382	1	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7541322	7541382	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7541383	7541525	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7541526	7541569	1	+	2	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7541526	7541569	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7541570	7541680	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7541681	7541755	1	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7541681	7541755	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7541756	7541903	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7541904	7541989	1	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7541904	7541989	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7541990	7542126	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7542127	7542201	1	+	1	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7542127	7542201	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7542202	7542355	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7542356	7542437	1	+	1	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7542356	7542437	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7542438	7542532	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7542533	7542601	1	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7542533	7542601	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7542602	7542690	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7542691	7542774	1	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7542691	7542774	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7542775	7542878	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7542879	7542957	0.99	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7542879	7542957	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7542958	7543063	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7543064	7543186	1	+	2	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7543064	7543186	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7543187	7543260	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7543261	7543337	1	+	2	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7543261	7543337	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7543338	7543423	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7543424	7543603	1	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7543424	7543603	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7543604	7543677	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7543678	7543711	0.92	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7543678	7543711	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7543712	7543971	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7543972	7544055	0.79	+	2	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7543972	7544055	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7544056	7544262	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7544263	7544370	1	+	2	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7544263	7544370	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7544371	7544461	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7544462	7544556	1	+	2	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7544462	7544556	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7544557	7544632	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7544633	7545572	0.55	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7544633	7545572	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	intron	7545573	7545659	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	CDS	7545660	7546330	0.55	+	2	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	exon	7545660	7546330	.	+	.	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
Ledus.S1	AUGUSTUS	stop_codon	7546331	7546333	.	+	0	transcript_id "Ledus.S1G075500.t1"; gene_id "Ledus.S1G075500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6090.t1 is derived from g3533.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28872497	28879254	.	-	.	Ledus.S1G351100
Ledus.S1	AUGUSTUS	transcript	28872497	28879254	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	stop_codon	28872494	28872496	.	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28872497	28872570	0.97	-	2	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28872497	28872570	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28872571	28872666	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28872667	28872841	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28872667	28872841	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28872842	28872944	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28872945	28873046	0.92	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28872945	28873046	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28873047	28873148	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28873149	28873229	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28873149	28873229	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28873230	28873414	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28873415	28873535	1	-	1	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28873415	28873535	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28873536	28873655	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28873656	28873794	1	-	2	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28873656	28873794	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28873795	28873936	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28873937	28874066	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28873937	28874066	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28874067	28874165	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28874166	28874333	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28874166	28874333	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28874334	28874429	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28874430	28874660	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28874430	28874660	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28874661	28874769	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28874770	28874907	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28874770	28874907	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28874908	28875010	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28875011	28875160	0.98	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28875011	28875160	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28875161	28875323	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28875324	28875494	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28875324	28875494	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28875495	28875601	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28875602	28875805	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28875602	28875805	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28875806	28875978	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28875979	28876203	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28875979	28876203	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28876204	28876288	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28876289	28876423	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28876289	28876423	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28876424	28876619	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28876620	28876721	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28876620	28876721	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28876722	28876800	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28876801	28877097	0.62	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28876801	28877097	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28877098	28877214	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28877215	28877403	0.94	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28877215	28877403	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28877404	28877542	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28877543	28877650	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28877543	28877650	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28877651	28877739	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28877740	28877787	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28877740	28877787	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28877788	28877881	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28877882	28878080	1	-	1	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28877882	28878080	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28878081	28878208	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28878209	28878456	1	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28878209	28878456	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28878457	28878584	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28878585	28878867	0.99	-	1	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28878585	28878867	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	intron	28878868	28879033	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	CDS	28879034	28879254	0.97	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	exon	28879034	28879254	.	-	.	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
Ledus.S1	AUGUSTUS	start_codon	28879252	28879254	.	-	0	transcript_id "Ledus.S1G351100.t1"; gene_id "Ledus.S1G351100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8202.t1 is derived from g12873.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9818002	9820899	.	+	.	Ledus.S5G098000
Ledus.S5	AUGUSTUS	transcript	9818002	9820899	.	+	.	transcript_id "Ledus.S5G098000.t1"; gene_id "Ledus.S5G098000"
Ledus.S5	AUGUSTUS	start_codon	9818002	9818004	.	+	0	transcript_id "Ledus.S5G098000.t1"; gene_id "Ledus.S5G098000"
Ledus.S5	AUGUSTUS	CDS	9818002	9818601	0.67	+	0	transcript_id "Ledus.S5G098000.t1"; gene_id "Ledus.S5G098000"
Ledus.S5	AUGUSTUS	exon	9818002	9818601	.	+	.	transcript_id "Ledus.S5G098000.t1"; gene_id "Ledus.S5G098000"
Ledus.S5	AUGUSTUS	intron	9818602	9818715	.	+	.	transcript_id "Ledus.S5G098000.t1"; gene_id "Ledus.S5G098000"
Ledus.S5	AUGUSTUS	CDS	9818716	9820899	0.8	+	0	transcript_id "Ledus.S5G098000.t1"; gene_id "Ledus.S5G098000"
Ledus.S5	AUGUSTUS	exon	9818716	9820899	.	+	.	transcript_id "Ledus.S5G098000.t1"; gene_id "Ledus.S5G098000"
Ledus.S5	AUGUSTUS	stop_codon	9820900	9820902	.	+	0	transcript_id "Ledus.S5G098000.t1"; gene_id "Ledus.S5G098000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9785.t1 is derived from g10815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9790802	9791097	.	-	.	Ledus.S3G126200
Ledus.S3	AUGUSTUS	transcript	9790802	9791097	.	-	.	transcript_id "Ledus.S3G126200.t1"; gene_id "Ledus.S3G126200"
Ledus.S3	AUGUSTUS	stop_codon	9790799	9790801	.	-	0	transcript_id "Ledus.S3G126200.t1"; gene_id "Ledus.S3G126200"
Ledus.S3	AUGUSTUS	CDS	9790802	9790965	0.92	-	2	transcript_id "Ledus.S3G126200.t1"; gene_id "Ledus.S3G126200"
Ledus.S3	AUGUSTUS	exon	9790802	9790965	.	-	.	transcript_id "Ledus.S3G126200.t1"; gene_id "Ledus.S3G126200"
Ledus.S3	AUGUSTUS	intron	9790966	9791063	.	-	.	transcript_id "Ledus.S3G126200.t1"; gene_id "Ledus.S3G126200"
Ledus.S3	AUGUSTUS	CDS	9791064	9791097	0.49	-	0	transcript_id "Ledus.S3G126200.t1"; gene_id "Ledus.S3G126200"
Ledus.S3	AUGUSTUS	exon	9791064	9791097	.	-	.	transcript_id "Ledus.S3G126200.t1"; gene_id "Ledus.S3G126200"
Ledus.S3	AUGUSTUS	start_codon	9791095	9791097	.	-	0	transcript_id "Ledus.S3G126200.t1"; gene_id "Ledus.S3G126200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4605.t1 is derived from g2042.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18106785	18110707	.	-	.	Ledus.S1G202600
Ledus.S1	AUGUSTUS	transcript	18106785	18110707	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	stop_codon	18106782	18106784	.	-	0	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18106785	18106841	0.93	-	0	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18106785	18106841	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18106842	18106946	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18106947	18107135	0.95	-	0	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18106947	18107135	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18107136	18107243	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18107244	18107401	0.91	-	2	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18107244	18107401	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18107402	18107519	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18107520	18107610	0.99	-	0	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18107520	18107610	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18107611	18107719	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18107720	18107894	0.85	-	1	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18107720	18107894	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18107895	18108025	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18108026	18108156	1	-	0	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18108026	18108156	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18108157	18108310	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18108311	18108529	1	-	0	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18108311	18108529	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18108530	18108663	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18108664	18108793	1	-	1	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18108664	18108793	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18108794	18108915	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18108916	18108982	1	-	2	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18108916	18108982	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18108983	18109187	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18109188	18109282	1	-	1	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18109188	18109282	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18109283	18109365	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18109366	18109437	1	-	1	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18109366	18109437	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18109438	18109524	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18109525	18109580	1	-	0	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18109525	18109580	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18109581	18109658	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18109659	18109728	1	-	1	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18109659	18109728	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18109729	18109813	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18109814	18109887	1	-	0	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18109814	18109887	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18109888	18109982	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18109983	18110108	1	-	0	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18109983	18110108	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	intron	18110109	18110215	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	CDS	18110216	18110707	0.95	-	0	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	exon	18110216	18110707	.	-	.	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
Ledus.S1	AUGUSTUS	start_codon	18110705	18110707	.	-	0	transcript_id "Ledus.S1G202600.t1"; gene_id "Ledus.S1G202600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg856.t1 is derived from g7717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5701392	5703563	.	-	.	Ledus.S2G073800
Ledus.S2	AUGUSTUS	transcript	5701392	5703563	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	stop_codon	5701389	5701391	.	-	0	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	CDS	5701392	5701529	0.93	-	0	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	exon	5701392	5701529	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	intron	5701530	5701620	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	CDS	5701621	5701731	1	-	0	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	exon	5701621	5701731	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	intron	5701732	5701826	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	CDS	5701827	5701925	1	-	0	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	exon	5701827	5701925	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	intron	5701926	5702071	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	CDS	5702072	5702228	1	-	1	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	exon	5702072	5702228	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	intron	5702229	5702335	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	CDS	5702336	5702499	0.99	-	0	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	exon	5702336	5702499	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	intron	5702500	5702645	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	CDS	5702646	5702708	1	-	0	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	exon	5702646	5702708	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	intron	5702709	5702786	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	CDS	5702787	5703011	0.99	-	0	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	exon	5702787	5703011	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	intron	5703012	5703195	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	CDS	5703196	5703293	1	-	2	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	exon	5703196	5703293	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	intron	5703294	5703433	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	CDS	5703434	5703563	1	-	0	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	exon	5703434	5703563	.	-	.	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
Ledus.S2	AUGUSTUS	start_codon	5703561	5703563	.	-	0	transcript_id "Ledus.S2G073800.t1"; gene_id "Ledus.S2G073800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12900.t1 is derived from g4392.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	163633	164997	.	+	.	Ledus.C9G000800
Ledus.C9	AUGUSTUS	transcript	163633	164997	.	+	.	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	start_codon	163633	163635	.	+	0	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	CDS	163633	163777	0.98	+	0	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	exon	163633	163777	.	+	.	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	intron	163778	163872	.	+	.	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	CDS	163873	163922	1	+	2	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	exon	163873	163922	.	+	.	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	intron	163923	164020	.	+	.	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	CDS	164021	164252	0.93	+	0	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	exon	164021	164252	.	+	.	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	intron	164253	164362	.	+	.	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	CDS	164363	164997	0.95	+	2	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	exon	164363	164997	.	+	.	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
Ledus.C9	AUGUSTUS	stop_codon	164998	165000	.	+	0	transcript_id "Ledus.C9G000800.t1"; gene_id "Ledus.C9G000800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7629.t1 is derived from g12300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4545835	4548010	.	+	.	Ledus.S5G040700
Ledus.S5	AUGUSTUS	transcript	4545835	4548010	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	start_codon	4545835	4545837	.	+	0	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	CDS	4545835	4546077	0.98	+	0	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	exon	4545835	4546077	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	intron	4546078	4546163	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	CDS	4546164	4546265	1	+	0	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	exon	4546164	4546265	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	intron	4546266	4546350	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	CDS	4546351	4546419	1	+	0	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	exon	4546351	4546419	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	intron	4546420	4546522	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	CDS	4546523	4546627	1	+	0	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	exon	4546523	4546627	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	intron	4546628	4546722	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	CDS	4546723	4546779	0.92	+	0	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	exon	4546723	4546779	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	intron	4546780	4546880	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	CDS	4546881	4547081	0.92	+	0	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	exon	4546881	4547081	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	intron	4547082	4547187	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	CDS	4547188	4547280	1	+	0	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	exon	4547188	4547280	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	intron	4547281	4547372	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	CDS	4547373	4547472	1	+	0	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	exon	4547373	4547472	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	intron	4547473	4547570	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	CDS	4547571	4547670	1	+	2	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	exon	4547571	4547670	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	intron	4547671	4547760	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	CDS	4547761	4547846	1	+	1	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	exon	4547761	4547846	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	intron	4547847	4547933	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	CDS	4547934	4548010	1	+	2	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	exon	4547934	4548010	.	+	.	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
Ledus.S5	AUGUSTUS	stop_codon	4548011	4548013	.	+	0	transcript_id "Ledus.S5G040700.t1"; gene_id "Ledus.S5G040700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12375.t1 is derived from g5996.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11487646	11488884	.	+	.	Ledus.S4G153100
Ledus.S4	AUGUSTUS	transcript	11487646	11488884	.	+	.	transcript_id "Ledus.S4G153100.t1"; gene_id "Ledus.S4G153100"
Ledus.S4	AUGUSTUS	start_codon	11487646	11487648	.	+	0	transcript_id "Ledus.S4G153100.t1"; gene_id "Ledus.S4G153100"
Ledus.S4	AUGUSTUS	CDS	11487646	11487807	0.77	+	0	transcript_id "Ledus.S4G153100.t1"; gene_id "Ledus.S4G153100"
Ledus.S4	AUGUSTUS	exon	11487646	11487807	.	+	.	transcript_id "Ledus.S4G153100.t1"; gene_id "Ledus.S4G153100"
Ledus.S4	AUGUSTUS	intron	11487808	11488005	.	+	.	transcript_id "Ledus.S4G153100.t1"; gene_id "Ledus.S4G153100"
Ledus.S4	AUGUSTUS	CDS	11488006	11488884	0.92	+	0	transcript_id "Ledus.S4G153100.t1"; gene_id "Ledus.S4G153100"
Ledus.S4	AUGUSTUS	exon	11488006	11488884	.	+	.	transcript_id "Ledus.S4G153100.t1"; gene_id "Ledus.S4G153100"
Ledus.S4	AUGUSTUS	stop_codon	11488885	11488887	.	+	0	transcript_id "Ledus.S4G153100.t1"; gene_id "Ledus.S4G153100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10846.t1 is derived from g4464.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	37007	38172	.	+	.	Ledus.S4G000200
Ledus.S4	AUGUSTUS	transcript	37007	38172	.	+	.	transcript_id "Ledus.S4G000200.t1"; gene_id "Ledus.S4G000200"
Ledus.S4	AUGUSTUS	start_codon	37007	37009	.	+	0	transcript_id "Ledus.S4G000200.t1"; gene_id "Ledus.S4G000200"
Ledus.S4	AUGUSTUS	CDS	37007	37357	1	+	0	transcript_id "Ledus.S4G000200.t1"; gene_id "Ledus.S4G000200"
Ledus.S4	AUGUSTUS	exon	37007	37357	.	+	.	transcript_id "Ledus.S4G000200.t1"; gene_id "Ledus.S4G000200"
Ledus.S4	AUGUSTUS	intron	37358	37451	.	+	.	transcript_id "Ledus.S4G000200.t1"; gene_id "Ledus.S4G000200"
Ledus.S4	AUGUSTUS	CDS	37452	37715	1	+	0	transcript_id "Ledus.S4G000200.t1"; gene_id "Ledus.S4G000200"
Ledus.S4	AUGUSTUS	exon	37452	37715	.	+	.	transcript_id "Ledus.S4G000200.t1"; gene_id "Ledus.S4G000200"
Ledus.S4	AUGUSTUS	intron	37716	37824	.	+	.	transcript_id "Ledus.S4G000200.t1"; gene_id "Ledus.S4G000200"
Ledus.S4	AUGUSTUS	CDS	37825	38172	0.61	+	0	transcript_id "Ledus.S4G000200.t1"; gene_id "Ledus.S4G000200"
Ledus.S4	AUGUSTUS	exon	37825	38172	.	+	.	transcript_id "Ledus.S4G000200.t1"; gene_id "Ledus.S4G000200"
Ledus.S4	AUGUSTUS	stop_codon	38173	38175	.	+	0	transcript_id "Ledus.S4G000200.t1"; gene_id "Ledus.S4G000200"
# This transcript jg11522.t2 is derived from g5140.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11523.t1 is derived from g5141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5058119	5061648	.	+	.	Ledus.S4G067900
Ledus.S4	AUGUSTUS	transcript	5058119	5061648	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	start_codon	5058119	5058121	.	+	0	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5058119	5058131	0.86	+	0	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5058119	5058131	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5058132	5058292	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5058293	5058328	0.77	+	2	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5058293	5058328	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5058329	5058991	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5058992	5059292	0.99	+	2	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5058992	5059292	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5059293	5059385	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5059386	5059468	1	+	1	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5059386	5059468	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5059469	5059703	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5059704	5059774	1	+	2	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5059704	5059774	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5059775	5059857	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5059858	5059925	1	+	0	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5059858	5059925	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5059926	5060022	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5060023	5060084	1	+	1	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5060023	5060084	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5060085	5060183	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5060184	5060281	1	+	2	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5060184	5060281	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5060282	5060377	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5060378	5060459	1	+	0	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5060378	5060459	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5060460	5060551	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5060552	5060694	1	+	2	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5060552	5060694	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5060695	5060780	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5060781	5060929	1	+	0	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5060781	5060929	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5060930	5061077	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5061078	5061217	1	+	1	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5061078	5061217	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5061218	5061299	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5061300	5061418	1	+	2	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5061300	5061418	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	intron	5061419	5061507	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	CDS	5061508	5061648	0.79	+	0	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	exon	5061508	5061648	.	+	.	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
Ledus.S4	AUGUSTUS	stop_codon	5061649	5061651	.	+	0	transcript_id "Ledus.S4G067900.t1"; gene_id "Ledus.S4G067900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12940.t1 is derived from g6750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	56362	56592	.	-	.	Ledus.S6G000200
Ledus.S6	AUGUSTUS	transcript	56362	56592	.	-	.	transcript_id "Ledus.S6G000200.t1"; gene_id "Ledus.S6G000200"
Ledus.S6	AUGUSTUS	stop_codon	56359	56361	.	-	0	transcript_id "Ledus.S6G000200.t1"; gene_id "Ledus.S6G000200"
Ledus.S6	AUGUSTUS	CDS	56362	56592	0.45	-	0	transcript_id "Ledus.S6G000200.t1"; gene_id "Ledus.S6G000200"
Ledus.S6	AUGUSTUS	exon	56362	56592	.	-	.	transcript_id "Ledus.S6G000200.t1"; gene_id "Ledus.S6G000200"
Ledus.S6	AUGUSTUS	start_codon	56590	56592	.	-	0	transcript_id "Ledus.S6G000200.t1"; gene_id "Ledus.S6G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10445.t1 is derived from g11475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15197661	15198942	.	-	.	Ledus.S3G192200
Ledus.S3	AUGUSTUS	transcript	15197661	15198942	.	-	.	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	stop_codon	15197658	15197660	.	-	0	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	CDS	15197661	15197677	0.99	-	2	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	exon	15197661	15197677	.	-	.	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	intron	15197678	15197766	.	-	.	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	CDS	15197767	15197869	0.71	-	0	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	exon	15197767	15197869	.	-	.	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	intron	15197870	15198002	.	-	.	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	CDS	15198003	15198061	0.7	-	2	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	exon	15198003	15198061	.	-	.	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	intron	15198062	15198343	.	-	.	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	CDS	15198344	15198401	0.73	-	0	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	exon	15198344	15198401	.	-	.	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	intron	15198402	15198600	.	-	.	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	CDS	15198601	15198942	0.55	-	0	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	exon	15198601	15198942	.	-	.	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
Ledus.S3	AUGUSTUS	start_codon	15198940	15198942	.	-	0	transcript_id "Ledus.S3G192200.t1"; gene_id "Ledus.S3G192200"
# This transcript jg9979.t2 is derived from g11009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9980.t1 is derived from g11010.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11725368	11727823	.	+	.	Ledus.S3G145700
Ledus.S3	AUGUSTUS	transcript	11725368	11727823	.	+	.	transcript_id "Ledus.S3G145700.t1"; gene_id "Ledus.S3G145700"
Ledus.S3	AUGUSTUS	start_codon	11725368	11725370	.	+	0	transcript_id "Ledus.S3G145700.t1"; gene_id "Ledus.S3G145700"
Ledus.S3	AUGUSTUS	CDS	11725368	11726155	0.7	+	0	transcript_id "Ledus.S3G145700.t1"; gene_id "Ledus.S3G145700"
Ledus.S3	AUGUSTUS	exon	11725368	11726155	.	+	.	transcript_id "Ledus.S3G145700.t1"; gene_id "Ledus.S3G145700"
Ledus.S3	AUGUSTUS	intron	11726156	11726238	.	+	.	transcript_id "Ledus.S3G145700.t1"; gene_id "Ledus.S3G145700"
Ledus.S3	AUGUSTUS	CDS	11726239	11727823	0.99	+	1	transcript_id "Ledus.S3G145700.t1"; gene_id "Ledus.S3G145700"
Ledus.S3	AUGUSTUS	exon	11726239	11727823	.	+	.	transcript_id "Ledus.S3G145700.t1"; gene_id "Ledus.S3G145700"
Ledus.S3	AUGUSTUS	stop_codon	11727824	11727826	.	+	0	transcript_id "Ledus.S3G145700.t1"; gene_id "Ledus.S3G145700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1358.t1 is derived from g8219.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9454748	9456428	.	+	.	Ledus.S2G124000
Ledus.S2	AUGUSTUS	transcript	9454748	9456428	.	+	.	transcript_id "Ledus.S2G124000.t1"; gene_id "Ledus.S2G124000"
Ledus.S2	AUGUSTUS	start_codon	9454748	9454750	.	+	0	transcript_id "Ledus.S2G124000.t1"; gene_id "Ledus.S2G124000"
Ledus.S2	AUGUSTUS	CDS	9454748	9455864	0.45	+	0	transcript_id "Ledus.S2G124000.t1"; gene_id "Ledus.S2G124000"
Ledus.S2	AUGUSTUS	exon	9454748	9455864	.	+	.	transcript_id "Ledus.S2G124000.t1"; gene_id "Ledus.S2G124000"
Ledus.S2	AUGUSTUS	intron	9455865	9455952	.	+	.	transcript_id "Ledus.S2G124000.t1"; gene_id "Ledus.S2G124000"
Ledus.S2	AUGUSTUS	CDS	9455953	9456428	0.99	+	2	transcript_id "Ledus.S2G124000.t1"; gene_id "Ledus.S2G124000"
Ledus.S2	AUGUSTUS	exon	9455953	9456428	.	+	.	transcript_id "Ledus.S2G124000.t1"; gene_id "Ledus.S2G124000"
Ledus.S2	AUGUSTUS	stop_codon	9456429	9456431	.	+	0	transcript_id "Ledus.S2G124000.t1"; gene_id "Ledus.S2G124000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1995.t1 is derived from g8858.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14112382	14112889	.	+	.	Ledus.S2G187700
Ledus.S2	AUGUSTUS	transcript	14112382	14112889	.	+	.	transcript_id "Ledus.S2G187700.t1"; gene_id "Ledus.S2G187700"
Ledus.S2	AUGUSTUS	start_codon	14112382	14112384	.	+	0	transcript_id "Ledus.S2G187700.t1"; gene_id "Ledus.S2G187700"
Ledus.S2	AUGUSTUS	CDS	14112382	14112618	0.92	+	0	transcript_id "Ledus.S2G187700.t1"; gene_id "Ledus.S2G187700"
Ledus.S2	AUGUSTUS	exon	14112382	14112618	.	+	.	transcript_id "Ledus.S2G187700.t1"; gene_id "Ledus.S2G187700"
Ledus.S2	AUGUSTUS	intron	14112619	14112706	.	+	.	transcript_id "Ledus.S2G187700.t1"; gene_id "Ledus.S2G187700"
Ledus.S2	AUGUSTUS	CDS	14112707	14112889	1	+	0	transcript_id "Ledus.S2G187700.t1"; gene_id "Ledus.S2G187700"
Ledus.S2	AUGUSTUS	exon	14112707	14112889	.	+	.	transcript_id "Ledus.S2G187700.t1"; gene_id "Ledus.S2G187700"
Ledus.S2	AUGUSTUS	stop_codon	14112890	14112892	.	+	0	transcript_id "Ledus.S2G187700.t1"; gene_id "Ledus.S2G187700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9086.t1 is derived from g10116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4451991	4452376	.	+	.	Ledus.S3G056300
Ledus.S3	AUGUSTUS	transcript	4451991	4452376	.	+	.	transcript_id "Ledus.S3G056300.t1"; gene_id "Ledus.S3G056300"
Ledus.S3	AUGUSTUS	start_codon	4451991	4451993	.	+	0	transcript_id "Ledus.S3G056300.t1"; gene_id "Ledus.S3G056300"
Ledus.S3	AUGUSTUS	CDS	4451991	4452059	0.21	+	0	transcript_id "Ledus.S3G056300.t1"; gene_id "Ledus.S3G056300"
Ledus.S3	AUGUSTUS	exon	4451991	4452059	.	+	.	transcript_id "Ledus.S3G056300.t1"; gene_id "Ledus.S3G056300"
Ledus.S3	AUGUSTUS	intron	4452060	4452229	.	+	.	transcript_id "Ledus.S3G056300.t1"; gene_id "Ledus.S3G056300"
Ledus.S3	AUGUSTUS	CDS	4452230	4452376	0.71	+	0	transcript_id "Ledus.S3G056300.t1"; gene_id "Ledus.S3G056300"
Ledus.S3	AUGUSTUS	exon	4452230	4452376	.	+	.	transcript_id "Ledus.S3G056300.t1"; gene_id "Ledus.S3G056300"
Ledus.S3	AUGUSTUS	stop_codon	4452377	4452379	.	+	0	transcript_id "Ledus.S3G056300.t1"; gene_id "Ledus.S3G056300"
# This transcript jg12214.t2 is derived from g5833.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12215.t1 is derived from g5834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10415572	10416365	.	+	.	Ledus.S4G137100
Ledus.S4	AUGUSTUS	transcript	10415572	10416365	.	+	.	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	start_codon	10415572	10415574	.	+	0	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	CDS	10415572	10415714	0.97	+	0	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	exon	10415572	10415714	.	+	.	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	intron	10415715	10415807	.	+	.	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	CDS	10415808	10415938	1	+	1	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	exon	10415808	10415938	.	+	.	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	intron	10415939	10416038	.	+	.	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	CDS	10416039	10416183	1	+	2	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	exon	10416039	10416183	.	+	.	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	intron	10416184	10416277	.	+	.	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	CDS	10416278	10416365	0.94	+	1	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	exon	10416278	10416365	.	+	.	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
Ledus.S4	AUGUSTUS	stop_codon	10416366	10416368	.	+	0	transcript_id "Ledus.S4G137100.t1"; gene_id "Ledus.S4G137100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2898.t1 is derived from g333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4451489	4452344	.	+	.	Ledus.S1G031900
Ledus.S1	AUGUSTUS	transcript	4451489	4452344	.	+	.	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	start_codon	4451489	4451491	.	+	0	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	CDS	4451489	4451614	0.39	+	0	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	exon	4451489	4451614	.	+	.	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	intron	4451615	4451721	.	+	.	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	CDS	4451722	4451861	0.76	+	0	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	exon	4451722	4451861	.	+	.	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	intron	4451862	4451963	.	+	.	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	CDS	4451964	4452066	1	+	1	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	exon	4451964	4452066	.	+	.	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	intron	4452067	4452149	.	+	.	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	CDS	4452150	4452206	1	+	0	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	exon	4452150	4452206	.	+	.	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	intron	4452207	4452290	.	+	.	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	CDS	4452291	4452344	0.61	+	0	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	exon	4452291	4452344	.	+	.	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
Ledus.S1	AUGUSTUS	stop_codon	4452345	4452347	.	+	0	transcript_id "Ledus.S1G031900.t1"; gene_id "Ledus.S1G031900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10244.t1 is derived from g11274.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13797306	13797709	.	+	.	Ledus.S3G172100
Ledus.S3	AUGUSTUS	transcript	13797306	13797709	.	+	.	transcript_id "Ledus.S3G172100.t1"; gene_id "Ledus.S3G172100"
Ledus.S3	AUGUSTUS	start_codon	13797306	13797308	.	+	0	transcript_id "Ledus.S3G172100.t1"; gene_id "Ledus.S3G172100"
Ledus.S3	AUGUSTUS	CDS	13797306	13797418	0.41	+	0	transcript_id "Ledus.S3G172100.t1"; gene_id "Ledus.S3G172100"
Ledus.S3	AUGUSTUS	exon	13797306	13797418	.	+	.	transcript_id "Ledus.S3G172100.t1"; gene_id "Ledus.S3G172100"
Ledus.S3	AUGUSTUS	intron	13797419	13797570	.	+	.	transcript_id "Ledus.S3G172100.t1"; gene_id "Ledus.S3G172100"
Ledus.S3	AUGUSTUS	CDS	13797571	13797709	0.44	+	1	transcript_id "Ledus.S3G172100.t1"; gene_id "Ledus.S3G172100"
Ledus.S3	AUGUSTUS	exon	13797571	13797709	.	+	.	transcript_id "Ledus.S3G172100.t1"; gene_id "Ledus.S3G172100"
Ledus.S3	AUGUSTUS	stop_codon	13797710	13797712	.	+	0	transcript_id "Ledus.S3G172100.t1"; gene_id "Ledus.S3G172100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11873.t1 is derived from g5492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7461952	7462164	.	-	.	Ledus.S4G102900
Ledus.S4	AUGUSTUS	transcript	7461952	7462164	.	-	.	transcript_id "Ledus.S4G102900.t1"; gene_id "Ledus.S4G102900"
Ledus.S4	AUGUSTUS	stop_codon	7461949	7461951	.	-	0	transcript_id "Ledus.S4G102900.t1"; gene_id "Ledus.S4G102900"
Ledus.S4	AUGUSTUS	CDS	7461952	7462164	0.94	-	0	transcript_id "Ledus.S4G102900.t1"; gene_id "Ledus.S4G102900"
Ledus.S4	AUGUSTUS	exon	7461952	7462164	.	-	.	transcript_id "Ledus.S4G102900.t1"; gene_id "Ledus.S4G102900"
Ledus.S4	AUGUSTUS	start_codon	7462162	7462164	.	-	0	transcript_id "Ledus.S4G102900.t1"; gene_id "Ledus.S4G102900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6190.t1 is derived from g3633.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29469867	29472942	.	-	.	Ledus.S1G361100
Ledus.S1	AUGUSTUS	transcript	29470420	29472942	.	-	.	transcript_id "Ledus.S1G361100.t1"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	stop_codon	29470417	29470419	.	-	0	transcript_id "Ledus.S1G361100.t1"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	CDS	29470420	29470447	1	-	1	transcript_id "Ledus.S1G361100.t1"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	exon	29470420	29470447	.	-	.	transcript_id "Ledus.S1G361100.t1"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	intron	29470448	29470521	.	-	.	transcript_id "Ledus.S1G361100.t1"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	CDS	29470522	29472822	0.6	-	1	transcript_id "Ledus.S1G361100.t1"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	exon	29470522	29472822	.	-	.	transcript_id "Ledus.S1G361100.t1"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	intron	29472823	29472913	.	-	.	transcript_id "Ledus.S1G361100.t1"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	CDS	29472914	29472942	0.37	-	0	transcript_id "Ledus.S1G361100.t1"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	exon	29472914	29472942	.	-	.	transcript_id "Ledus.S1G361100.t1"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	start_codon	29472940	29472942	.	-	0	transcript_id "Ledus.S1G361100.t1"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	transcript	29469867	29472890	.	-	.	transcript_id "Ledus.S1G361100.t2"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	stop_codon	29469864	29469866	.	-	0	transcript_id "Ledus.S1G361100.t2"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	CDS	29469867	29472890	0.45	-	0	transcript_id "Ledus.S1G361100.t2"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	exon	29469867	29472890	.	-	.	transcript_id "Ledus.S1G361100.t2"; gene_id "Ledus.S1G361100"
Ledus.S1	AUGUSTUS	start_codon	29472888	29472890	.	-	0	transcript_id "Ledus.S1G361100.t2"; gene_id "Ledus.S1G361100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6620.t1 is derived from g4063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32755340	32757116	.	+	.	Ledus.S1G404100
Ledus.S1	AUGUSTUS	transcript	32755340	32757116	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	start_codon	32755340	32755342	.	+	0	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	CDS	32755340	32755438	0.23	+	0	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	exon	32755340	32755438	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	intron	32755439	32755541	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	CDS	32755542	32755663	1	+	0	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	exon	32755542	32755663	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	intron	32755664	32755767	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	CDS	32755768	32755828	0.71	+	1	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	exon	32755768	32755828	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	intron	32755829	32755916	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	CDS	32755917	32756057	1	+	0	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	exon	32755917	32756057	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	intron	32756058	32756162	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	CDS	32756163	32756270	1	+	0	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	exon	32756163	32756270	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	intron	32756271	32756354	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	CDS	32756355	32756379	1	+	0	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	exon	32756355	32756379	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	intron	32756380	32756465	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	CDS	32756466	32756522	0.84	+	2	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	exon	32756466	32756522	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	intron	32756523	32756685	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	CDS	32756686	32756934	0.9	+	2	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	exon	32756686	32756934	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	intron	32756935	32757030	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	CDS	32757031	32757116	0.97	+	2	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	exon	32757031	32757116	.	+	.	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
Ledus.S1	AUGUSTUS	stop_codon	32757117	32757119	.	+	0	transcript_id "Ledus.S1G404100.t1"; gene_id "Ledus.S1G404100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4354.t1 is derived from g1790.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16543182	16545471	.	+	.	Ledus.S1G177500
Ledus.S1	AUGUSTUS	transcript	16543182	16545471	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	start_codon	16543182	16543184	.	+	0	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	CDS	16543182	16543256	0.83	+	0	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	exon	16543182	16543256	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	intron	16543257	16543334	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	CDS	16543335	16543491	1	+	0	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	exon	16543335	16543491	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	intron	16543492	16543583	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	CDS	16543584	16543822	0.96	+	2	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	exon	16543584	16543822	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	intron	16543823	16543932	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	CDS	16543933	16544096	0.88	+	0	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	exon	16543933	16544096	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	intron	16544097	16544236	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	CDS	16544237	16544288	1	+	1	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	exon	16544237	16544288	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	intron	16544289	16544440	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	CDS	16544441	16544668	1	+	0	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	exon	16544441	16544668	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	intron	16544669	16544788	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	CDS	16544789	16544873	0.69	+	0	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	exon	16544789	16544873	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	intron	16544874	16544978	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	CDS	16544979	16545295	0.49	+	2	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	exon	16544979	16545295	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	intron	16545296	16545369	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	CDS	16545370	16545471	1	+	0	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	exon	16545370	16545471	.	+	.	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
Ledus.S1	AUGUSTUS	stop_codon	16545472	16545474	.	+	0	transcript_id "Ledus.S1G177500.t1"; gene_id "Ledus.S1G177500"
# This transcript jg5425.t2 is derived from g2864.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5426.t1 is derived from g2865.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24100036	24103192	.	+	.	Ledus.S1G284700
Ledus.S1	AUGUSTUS	transcript	24100036	24103192	.	+	.	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	start_codon	24100036	24100038	.	+	0	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	CDS	24100036	24100099	0.66	+	0	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	exon	24100036	24100099	.	+	.	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	intron	24100100	24100183	.	+	.	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	CDS	24100184	24100245	1	+	2	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	exon	24100184	24100245	.	+	.	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	intron	24100246	24100399	.	+	.	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	CDS	24100400	24102883	0.51	+	0	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	exon	24100400	24102883	.	+	.	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	intron	24102884	24103051	.	+	.	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	CDS	24103052	24103101	0.49	+	0	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	exon	24103052	24103101	.	+	.	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	intron	24103102	24103185	.	+	.	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	CDS	24103186	24103192	0.41	+	1	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	exon	24103186	24103192	.	+	.	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
Ledus.S1	AUGUSTUS	stop_codon	24103193	24103195	.	+	0	transcript_id "Ledus.S1G284700.t1"; gene_id "Ledus.S1G284700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11349.t1 is derived from g4967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3716869	3717675	.	+	.	Ledus.S4G050500
Ledus.S4	AUGUSTUS	transcript	3716869	3717675	.	+	.	transcript_id "Ledus.S4G050500.t1"; gene_id "Ledus.S4G050500"
Ledus.S4	AUGUSTUS	start_codon	3716869	3716871	.	+	0	transcript_id "Ledus.S4G050500.t1"; gene_id "Ledus.S4G050500"
Ledus.S4	AUGUSTUS	CDS	3716869	3717675	0.9	+	0	transcript_id "Ledus.S4G050500.t1"; gene_id "Ledus.S4G050500"
Ledus.S4	AUGUSTUS	exon	3716869	3717675	.	+	.	transcript_id "Ledus.S4G050500.t1"; gene_id "Ledus.S4G050500"
Ledus.S4	AUGUSTUS	stop_codon	3717676	3717678	.	+	0	transcript_id "Ledus.S4G050500.t1"; gene_id "Ledus.S4G050500"
# This transcript jg460.t2 is derived from g7321.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg461.t1 is derived from g7322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2685538	2685801	.	-	.	Ledus.S2G034300
Ledus.S2	AUGUSTUS	transcript	2685538	2685801	.	-	.	transcript_id "Ledus.S2G034300.t1"; gene_id "Ledus.S2G034300"
Ledus.S2	AUGUSTUS	stop_codon	2685535	2685537	.	-	0	transcript_id "Ledus.S2G034300.t1"; gene_id "Ledus.S2G034300"
Ledus.S2	AUGUSTUS	CDS	2685538	2685801	0.69	-	0	transcript_id "Ledus.S2G034300.t1"; gene_id "Ledus.S2G034300"
Ledus.S2	AUGUSTUS	exon	2685538	2685801	.	-	.	transcript_id "Ledus.S2G034300.t1"; gene_id "Ledus.S2G034300"
Ledus.S2	AUGUSTUS	start_codon	2685799	2685801	.	-	0	transcript_id "Ledus.S2G034300.t1"; gene_id "Ledus.S2G034300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10580.t1 is derived from g11610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16247889	16249359	.	+	.	Ledus.S3G205700
Ledus.S3	AUGUSTUS	transcript	16247889	16249359	.	+	.	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	start_codon	16247889	16247891	.	+	0	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	CDS	16247889	16248071	1	+	0	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	exon	16247889	16248071	.	+	.	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	intron	16248072	16248141	.	+	.	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	CDS	16248142	16248334	1	+	0	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	exon	16248142	16248334	.	+	.	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	intron	16248335	16248429	.	+	.	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	CDS	16248430	16248515	1	+	2	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	exon	16248430	16248515	.	+	.	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	intron	16248516	16248609	.	+	.	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	CDS	16248610	16248741	1	+	0	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	exon	16248610	16248741	.	+	.	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	intron	16248742	16248830	.	+	.	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	CDS	16248831	16248998	1	+	0	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	exon	16248831	16248998	.	+	.	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	intron	16248999	16249089	.	+	.	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	CDS	16249090	16249359	0.89	+	0	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	exon	16249090	16249359	.	+	.	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
Ledus.S3	AUGUSTUS	stop_codon	16249360	16249362	.	+	0	transcript_id "Ledus.S3G205700.t1"; gene_id "Ledus.S3G205700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5632.t1 is derived from g3071.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25450543	25452338	.	+	.	Ledus.S1G305300
Ledus.S1	AUGUSTUS	transcript	25450543	25452338	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	start_codon	25450543	25450545	.	+	0	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	CDS	25450543	25450595	0.46	+	0	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	exon	25450543	25450595	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	intron	25450596	25450686	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	CDS	25450687	25450767	1	+	1	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	exon	25450687	25450767	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	intron	25450768	25450861	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	CDS	25450862	25450975	1	+	1	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	exon	25450862	25450975	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	intron	25450976	25451062	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	CDS	25451063	25451154	0.98	+	1	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	exon	25451063	25451154	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	intron	25451155	25451244	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	CDS	25451245	25451282	0.55	+	2	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	exon	25451245	25451282	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	intron	25451283	25451408	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	CDS	25451409	25451540	0.61	+	0	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	exon	25451409	25451540	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	intron	25451541	25451633	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	CDS	25451634	25452338	1	+	0	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	exon	25451634	25452338	.	+	.	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
Ledus.S1	AUGUSTUS	stop_codon	25452339	25452341	.	+	0	transcript_id "Ledus.S1G305300.t1"; gene_id "Ledus.S1G305300"
# This transcript jg7057.t2 is derived from g6588.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7058.t1 is derived from g6589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1128286	1130539	.	+	.	Ledus.C7G011900
Ledus.C7	AUGUSTUS	transcript	1128286	1130539	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	start_codon	1128286	1128288	.	+	0	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	CDS	1128286	1128415	1	+	0	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	exon	1128286	1128415	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	intron	1128416	1128488	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	CDS	1128489	1128553	1	+	2	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	exon	1128489	1128553	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	intron	1128554	1128629	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	CDS	1128630	1128693	1	+	0	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	exon	1128630	1128693	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	intron	1128694	1128787	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	CDS	1128788	1128797	1	+	2	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	exon	1128788	1128797	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	intron	1128798	1128907	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	CDS	1128908	1128939	1	+	1	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	exon	1128908	1128939	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	intron	1128940	1129023	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	CDS	1129024	1129136	1	+	2	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	exon	1129024	1129136	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	intron	1129137	1129237	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	CDS	1129238	1129314	1	+	0	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	exon	1129238	1129314	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	intron	1129315	1129384	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	CDS	1129385	1129487	1	+	1	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	exon	1129385	1129487	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	intron	1129488	1129570	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	CDS	1129571	1130539	0.99	+	0	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	exon	1129571	1130539	.	+	.	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
Ledus.C7	AUGUSTUS	stop_codon	1130540	1130542	.	+	0	transcript_id "Ledus.C7G011900.t1"; gene_id "Ledus.C7G011900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11833.t1 is derived from g5452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7174817	7175503	.	-	.	Ledus.S4G098900
Ledus.S4	AUGUSTUS	transcript	7174817	7175503	.	-	.	transcript_id "Ledus.S4G098900.t1"; gene_id "Ledus.S4G098900"
Ledus.S4	AUGUSTUS	stop_codon	7174814	7174816	.	-	0	transcript_id "Ledus.S4G098900.t1"; gene_id "Ledus.S4G098900"
Ledus.S4	AUGUSTUS	CDS	7174817	7175503	0.81	-	0	transcript_id "Ledus.S4G098900.t1"; gene_id "Ledus.S4G098900"
Ledus.S4	AUGUSTUS	exon	7174817	7175503	.	-	.	transcript_id "Ledus.S4G098900.t1"; gene_id "Ledus.S4G098900"
Ledus.S4	AUGUSTUS	start_codon	7175501	7175503	.	-	0	transcript_id "Ledus.S4G098900.t1"; gene_id "Ledus.S4G098900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6835.t1 is derived from g4279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34563541	34564805	.	-	.	Ledus.S1G425600
Ledus.S1	AUGUSTUS	transcript	34563541	34564681	.	-	.	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	stop_codon	34563538	34563540	.	-	0	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	CDS	34563541	34563636	0.94	-	0	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	exon	34563541	34563636	.	-	.	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	intron	34563637	34563729	.	-	.	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	CDS	34563730	34563897	1	-	0	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	exon	34563730	34563897	.	-	.	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	intron	34563898	34563979	.	-	.	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	CDS	34563980	34564135	1	-	0	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	exon	34563980	34564135	.	-	.	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	intron	34564136	34564208	.	-	.	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	CDS	34564209	34564568	1	-	0	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	exon	34564209	34564568	.	-	.	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	intron	34564569	34564648	.	-	.	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	CDS	34564649	34564681	1	-	0	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	exon	34564649	34564681	.	-	.	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	start_codon	34564679	34564681	.	-	0	transcript_id "Ledus.S1G425600.t1"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	transcript	34563541	34564805	.	-	.	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	stop_codon	34563538	34563540	.	-	0	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	CDS	34563541	34563636	0.95	-	0	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	exon	34563541	34563636	.	-	.	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	intron	34563637	34563729	.	-	.	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	CDS	34563730	34563897	1	-	0	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	exon	34563730	34563897	.	-	.	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	intron	34563898	34563979	.	-	.	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	CDS	34563980	34564135	1	-	0	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	exon	34563980	34564135	.	-	.	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	intron	34564136	34564208	.	-	.	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	CDS	34564209	34564568	1	-	0	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	exon	34564209	34564568	.	-	.	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	intron	34564569	34564715	.	-	.	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	CDS	34564716	34564805	0.99	-	0	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	exon	34564716	34564805	.	-	.	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
Ledus.S1	AUGUSTUS	start_codon	34564803	34564805	.	-	0	transcript_id "Ledus.S1G425600.t2"; gene_id "Ledus.S1G425600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12518.t1 is derived from g6139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12690420	12691722	.	-	.	Ledus.S4G167400
Ledus.S4	AUGUSTUS	transcript	12690420	12691722	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	stop_codon	12690417	12690419	.	-	0	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	CDS	12690420	12690558	0.37	-	1	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	exon	12690420	12690558	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	intron	12690559	12690648	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	CDS	12690649	12690771	0.61	-	1	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	exon	12690649	12690771	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	intron	12690772	12690862	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	CDS	12690863	12690869	0.54	-	2	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	exon	12690863	12690869	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	intron	12690870	12690955	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	CDS	12690956	12691102	0.47	-	2	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	exon	12690956	12691102	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	intron	12691103	12691248	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	CDS	12691249	12691253	0.81	-	1	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	exon	12691249	12691253	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	intron	12691254	12691560	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	CDS	12691561	12691618	0.84	-	2	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	exon	12691561	12691618	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	intron	12691619	12691706	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	CDS	12691707	12691722	0.57	-	0	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	exon	12691707	12691722	.	-	.	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
Ledus.S4	AUGUSTUS	start_codon	12691720	12691722	.	-	0	transcript_id "Ledus.S4G167400.t1"; gene_id "Ledus.S4G167400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9333.t1 is derived from g10363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6180101	6180580	.	-	.	Ledus.S3G081000
Ledus.S3	AUGUSTUS	transcript	6180101	6180580	.	-	.	transcript_id "Ledus.S3G081000.t1"; gene_id "Ledus.S3G081000"
Ledus.S3	AUGUSTUS	stop_codon	6180098	6180100	.	-	0	transcript_id "Ledus.S3G081000.t1"; gene_id "Ledus.S3G081000"
Ledus.S3	AUGUSTUS	CDS	6180101	6180580	0.84	-	0	transcript_id "Ledus.S3G081000.t1"; gene_id "Ledus.S3G081000"
Ledus.S3	AUGUSTUS	exon	6180101	6180580	.	-	.	transcript_id "Ledus.S3G081000.t1"; gene_id "Ledus.S3G081000"
Ledus.S3	AUGUSTUS	start_codon	6180578	6180580	.	-	0	transcript_id "Ledus.S3G081000.t1"; gene_id "Ledus.S3G081000"
# This transcript jg7412.t2 is derived from g12083.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7413.t1 is derived from g12084.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2145272	2145487	.	-	.	Ledus.S5G019100
Ledus.S5	AUGUSTUS	transcript	2145272	2145487	.	-	.	transcript_id "Ledus.S5G019100.t1"; gene_id "Ledus.S5G019100"
Ledus.S5	AUGUSTUS	stop_codon	2145269	2145271	.	-	0	transcript_id "Ledus.S5G019100.t1"; gene_id "Ledus.S5G019100"
Ledus.S5	AUGUSTUS	CDS	2145272	2145487	0.47	-	0	transcript_id "Ledus.S5G019100.t1"; gene_id "Ledus.S5G019100"
Ledus.S5	AUGUSTUS	exon	2145272	2145487	.	-	.	transcript_id "Ledus.S5G019100.t1"; gene_id "Ledus.S5G019100"
Ledus.S5	AUGUSTUS	start_codon	2145485	2145487	.	-	0	transcript_id "Ledus.S5G019100.t1"; gene_id "Ledus.S5G019100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5129.t1 is derived from g2568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21877076	21879738	.	+	.	Ledus.S1G255000
Ledus.S1	AUGUSTUS	transcript	21877076	21879738	.	+	.	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	start_codon	21877076	21877078	.	+	0	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	CDS	21877076	21877118	0.57	+	0	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	exon	21877076	21877118	.	+	.	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	intron	21877119	21877279	.	+	.	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	CDS	21877280	21877356	0.83	+	2	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	exon	21877280	21877356	.	+	.	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	intron	21877357	21877444	.	+	.	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	CDS	21877445	21877692	0.95	+	0	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	exon	21877445	21877692	.	+	.	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	intron	21877693	21878022	.	+	.	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	CDS	21878023	21878974	0.69	+	1	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	exon	21878023	21878974	.	+	.	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	intron	21878975	21879147	.	+	.	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	CDS	21879148	21879738	0.99	+	0	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	exon	21879148	21879738	.	+	.	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
Ledus.S1	AUGUSTUS	stop_codon	21879739	21879741	.	+	0	transcript_id "Ledus.S1G255000.t1"; gene_id "Ledus.S1G255000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4603.t1 is derived from g2040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18055385	18059952	.	+	.	Ledus.S1G202400
Ledus.S1	AUGUSTUS	transcript	18055385	18059952	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	start_codon	18055385	18055387	.	+	0	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18055385	18056164	0.67	+	0	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18055385	18056164	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18056165	18056352	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18056353	18056585	1	+	0	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18056353	18056585	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18056586	18056716	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18056717	18056876	1	+	1	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18056717	18056876	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18056877	18057030	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18057031	18057303	1	+	0	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18057031	18057303	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18057304	18057482	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18057483	18057622	1	+	0	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18057483	18057622	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18057623	18057735	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18057736	18058069	0.66	+	1	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18057736	18058069	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18058070	18058153	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18058154	18058315	1	+	0	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18058154	18058315	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18058316	18058401	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18058402	18058476	1	+	0	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18058402	18058476	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18058477	18058667	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18058668	18058768	1	+	0	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18058668	18058768	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18058769	18059022	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18059023	18059092	1	+	1	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18059023	18059092	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18059093	18059286	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18059287	18059343	1	+	0	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18059287	18059343	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18059344	18059437	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18059438	18059499	1	+	0	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18059438	18059499	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18059500	18059636	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18059637	18059709	1	+	1	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18059637	18059709	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	intron	18059710	18059793	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	CDS	18059794	18059952	0.99	+	0	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	exon	18059794	18059952	.	+	.	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
Ledus.S1	AUGUSTUS	stop_codon	18059953	18059955	.	+	0	transcript_id "Ledus.S1G202400.t1"; gene_id "Ledus.S1G202400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg5654.t1 is derived from g3093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25592460	25598699	.	-	.	Ledus.S1G307500
Ledus.S1	AUGUSTUS	transcript	25592460	25593404	.	-	.	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	stop_codon	25592457	25592459	.	-	0	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25592460	25592501	1	-	0	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25592460	25592501	.	-	.	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25592502	25592593	.	-	.	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25592594	25592638	1	-	0	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25592594	25592638	.	-	.	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25592639	25592723	.	-	.	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25592724	25592792	1	-	0	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25592724	25592792	.	-	.	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25592793	25592891	.	-	.	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25592892	25592980	1	-	2	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25592892	25592980	.	-	.	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25592981	25593069	.	-	.	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25593070	25593133	1	-	0	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25593070	25593133	.	-	.	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25593134	25593212	.	-	.	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25593213	25593404	0.51	-	0	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25593213	25593404	.	-	.	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	start_codon	25593402	25593404	.	-	0	transcript_id "Ledus.S1G307500.t1"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	transcript	25593712	25598699	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	stop_codon	25593709	25593711	.	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25593712	25593713	0.97	-	2	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25593712	25593713	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25593714	25593893	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25593894	25594122	0.98	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25593894	25594122	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25594123	25594265	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25594266	25594362	1	-	1	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25594266	25594362	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25594363	25594471	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25594472	25594566	1	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25594472	25594566	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25594567	25594652	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25594653	25594757	1	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25594653	25594757	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25594758	25594866	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25594867	25595019	0.8	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25594867	25595019	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25595020	25595156	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25595157	25595253	0.99	-	1	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25595157	25595253	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25595254	25595336	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25595337	25595599	1	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25595337	25595599	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25595600	25595686	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25595687	25595811	1	-	2	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25595687	25595811	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25595812	25595950	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25595951	25596116	1	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25595951	25596116	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25596117	25596221	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25596222	25596300	1	-	1	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25596222	25596300	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25596301	25596389	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25596390	25596481	1	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25596390	25596481	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25596482	25596601	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25596602	25596670	1	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25596602	25596670	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25596671	25596785	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25596786	25596944	0.92	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25596786	25596944	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25596945	25597048	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25597049	25597105	0.91	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25597049	25597105	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25597106	25597231	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25597232	25597294	0.6	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25597232	25597294	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25597295	25597420	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25597421	25597468	0.98	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25597421	25597468	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25597469	25597637	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25597638	25597703	1	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25597638	25597703	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25597704	25597788	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25597789	25597852	1	-	1	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25597789	25597852	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25597853	25597999	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25598000	25598070	1	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25598000	25598070	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25598071	25598148	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25598149	25598251	1	-	1	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25598149	25598251	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25598252	25598359	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25598360	25598426	1	-	2	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25598360	25598426	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25598427	25598554	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25598555	25598699	0.39	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25598555	25598699	.	-	.	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	start_codon	25598697	25598699	.	-	0	transcript_id "Ledus.S1G307500.t2"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	transcript	25592460	25598699	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	stop_codon	25592457	25592459	.	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25592460	25592501	1	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25592460	25592501	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25592502	25592593	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25592594	25592638	1	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25592594	25592638	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25592639	25592723	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25592724	25592792	1	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25592724	25592792	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25592793	25592891	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25592892	25592980	1	-	2	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25592892	25592980	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25592981	25593069	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25593070	25593133	1	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25593070	25593133	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25593134	25593212	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25593213	25593466	0.36	-	2	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25593213	25593466	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25593467	25593602	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25593603	25593614	0.28	-	2	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25593603	25593614	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25593615	25593893	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25593894	25594122	0.92	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25593894	25594122	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25594123	25594265	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25594266	25594362	1	-	1	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25594266	25594362	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25594363	25594471	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25594472	25594566	1	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25594472	25594566	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25594567	25594652	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25594653	25594757	1	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25594653	25594757	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25594758	25594866	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25594867	25595019	0.82	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25594867	25595019	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25595020	25595156	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25595157	25595253	0.99	-	1	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25595157	25595253	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25595254	25595336	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25595337	25595599	1	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25595337	25595599	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25595600	25595686	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25595687	25595811	1	-	2	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25595687	25595811	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25595812	25595950	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25595951	25596116	1	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25595951	25596116	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25596117	25596221	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25596222	25596300	1	-	1	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25596222	25596300	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25596301	25596389	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25596390	25596481	1	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25596390	25596481	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25596482	25596601	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25596602	25596670	1	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25596602	25596670	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25596671	25596785	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25596786	25596944	0.96	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25596786	25596944	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25596945	25597048	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25597049	25597105	0.93	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25597049	25597105	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25597106	25597231	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25597232	25597294	0.52	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25597232	25597294	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25597295	25597420	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25597421	25597468	0.94	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25597421	25597468	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25597469	25597637	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25597638	25597703	1	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25597638	25597703	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25597704	25597788	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25597789	25597852	1	-	1	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25597789	25597852	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25597853	25597999	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25598000	25598070	1	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25598000	25598070	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25598071	25598148	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25598149	25598251	1	-	1	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25598149	25598251	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25598252	25598359	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25598360	25598426	1	-	2	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25598360	25598426	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	intron	25598427	25598554	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	CDS	25598555	25598699	0.42	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	exon	25598555	25598699	.	-	.	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
Ledus.S1	AUGUSTUS	start_codon	25598697	25598699	.	-	0	transcript_id "Ledus.S1G307500.t3"; gene_id "Ledus.S1G307500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11806.t1 is derived from g5425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6870353	6872959	.	-	.	Ledus.S4G096200
Ledus.S4	AUGUSTUS	transcript	6870353	6872959	.	-	.	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	stop_codon	6870350	6870352	.	-	0	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	CDS	6870353	6870499	1	-	0	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	exon	6870353	6870499	.	-	.	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	intron	6870500	6870574	.	-	.	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	CDS	6870575	6870715	1	-	0	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	exon	6870575	6870715	.	-	.	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	intron	6870716	6870812	.	-	.	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	CDS	6870813	6871275	0.87	-	1	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	exon	6870813	6871275	.	-	.	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	intron	6871276	6871377	.	-	.	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	CDS	6871378	6871563	0.98	-	1	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	exon	6871378	6871563	.	-	.	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	intron	6871564	6871791	.	-	.	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	CDS	6871792	6872042	1	-	0	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	exon	6871792	6872042	.	-	.	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	intron	6872043	6872206	.	-	.	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	CDS	6872207	6872959	0.98	-	0	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	exon	6872207	6872959	.	-	.	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
Ledus.S4	AUGUSTUS	start_codon	6872957	6872959	.	-	0	transcript_id "Ledus.S4G096200.t1"; gene_id "Ledus.S4G096200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10648.t1 is derived from g11678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16859032	16860254	.	+	.	Ledus.S3G212500
Ledus.S3	AUGUSTUS	transcript	16859032	16860254	.	+	.	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	start_codon	16859032	16859034	.	+	0	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	CDS	16859032	16859106	0.99	+	0	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	exon	16859032	16859106	.	+	.	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	intron	16859107	16859311	.	+	.	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	CDS	16859312	16859379	1	+	0	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	exon	16859312	16859379	.	+	.	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	intron	16859380	16859495	.	+	.	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	CDS	16859496	16859609	0.88	+	1	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	exon	16859496	16859609	.	+	.	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	intron	16859610	16859718	.	+	.	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	CDS	16859719	16859881	1	+	1	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	exon	16859719	16859881	.	+	.	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	intron	16859882	16859990	.	+	.	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	CDS	16859991	16860137	1	+	0	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	exon	16859991	16860137	.	+	.	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	intron	16860138	16860230	.	+	.	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	CDS	16860231	16860254	1	+	0	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	exon	16860231	16860254	.	+	.	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
Ledus.S3	AUGUSTUS	stop_codon	16860255	16860257	.	+	0	transcript_id "Ledus.S3G212500.t1"; gene_id "Ledus.S3G212500"
# This transcript jg7763.t2 is derived from g12434.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7764.t1 is derived from g12435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6186013	6186222	.	+	.	Ledus.S5G054200
Ledus.S5	AUGUSTUS	transcript	6186013	6186222	.	+	.	transcript_id "Ledus.S5G054200.t1"; gene_id "Ledus.S5G054200"
Ledus.S5	AUGUSTUS	start_codon	6186013	6186015	.	+	0	transcript_id "Ledus.S5G054200.t1"; gene_id "Ledus.S5G054200"
Ledus.S5	AUGUSTUS	CDS	6186013	6186222	0.59	+	0	transcript_id "Ledus.S5G054200.t1"; gene_id "Ledus.S5G054200"
Ledus.S5	AUGUSTUS	exon	6186013	6186222	.	+	.	transcript_id "Ledus.S5G054200.t1"; gene_id "Ledus.S5G054200"
Ledus.S5	AUGUSTUS	stop_codon	6186223	6186225	.	+	0	transcript_id "Ledus.S5G054200.t1"; gene_id "Ledus.S5G054200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg443.t1 is derived from g7304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2640881	2642575	.	+	.	Ledus.S2G032500
Ledus.S2	AUGUSTUS	transcript	2640881	2642575	.	+	.	transcript_id "Ledus.S2G032500.t1"; gene_id "Ledus.S2G032500"
Ledus.S2	AUGUSTUS	start_codon	2640881	2640883	.	+	0	transcript_id "Ledus.S2G032500.t1"; gene_id "Ledus.S2G032500"
Ledus.S2	AUGUSTUS	CDS	2640881	2642575	0.82	+	0	transcript_id "Ledus.S2G032500.t1"; gene_id "Ledus.S2G032500"
Ledus.S2	AUGUSTUS	exon	2640881	2642575	.	+	.	transcript_id "Ledus.S2G032500.t1"; gene_id "Ledus.S2G032500"
Ledus.S2	AUGUSTUS	stop_codon	2642576	2642578	.	+	0	transcript_id "Ledus.S2G032500.t1"; gene_id "Ledus.S2G032500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3080.t1 is derived from g515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5770032	5771306	.	-	.	Ledus.S1G050100
Ledus.S1	AUGUSTUS	transcript	5770032	5771306	.	-	.	transcript_id "Ledus.S1G050100.t1"; gene_id "Ledus.S1G050100"
Ledus.S1	AUGUSTUS	stop_codon	5770029	5770031	.	-	0	transcript_id "Ledus.S1G050100.t1"; gene_id "Ledus.S1G050100"
Ledus.S1	AUGUSTUS	CDS	5770032	5771306	0.42	-	0	transcript_id "Ledus.S1G050100.t1"; gene_id "Ledus.S1G050100"
Ledus.S1	AUGUSTUS	exon	5770032	5771306	.	-	.	transcript_id "Ledus.S1G050100.t1"; gene_id "Ledus.S1G050100"
Ledus.S1	AUGUSTUS	start_codon	5771304	5771306	.	-	0	transcript_id "Ledus.S1G050100.t1"; gene_id "Ledus.S1G050100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1453.t1 is derived from g8314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10280621	10281145	.	-	.	Ledus.S2G133500
Ledus.S2	AUGUSTUS	transcript	10280621	10281145	.	-	.	transcript_id "Ledus.S2G133500.t1"; gene_id "Ledus.S2G133500"
Ledus.S2	AUGUSTUS	stop_codon	10280618	10280620	.	-	0	transcript_id "Ledus.S2G133500.t1"; gene_id "Ledus.S2G133500"
Ledus.S2	AUGUSTUS	CDS	10280621	10281145	0.75	-	0	transcript_id "Ledus.S2G133500.t1"; gene_id "Ledus.S2G133500"
Ledus.S2	AUGUSTUS	exon	10280621	10281145	.	-	.	transcript_id "Ledus.S2G133500.t1"; gene_id "Ledus.S2G133500"
Ledus.S2	AUGUSTUS	start_codon	10281143	10281145	.	-	0	transcript_id "Ledus.S2G133500.t1"; gene_id "Ledus.S2G133500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9092.t1 is derived from g10122.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4546696	4548609	.	-	.	Ledus.S3G056900
Ledus.S3	AUGUSTUS	transcript	4546696	4548609	.	-	.	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	stop_codon	4546693	4546695	.	-	0	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	CDS	4546696	4546862	1	-	2	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	exon	4546696	4546862	.	-	.	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	intron	4546863	4546983	.	-	.	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	CDS	4546984	4547053	1	-	0	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	exon	4546984	4547053	.	-	.	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	intron	4547054	4547135	.	-	.	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	CDS	4547136	4547277	0.99	-	1	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	exon	4547136	4547277	.	-	.	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	intron	4547278	4547383	.	-	.	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	CDS	4547384	4547564	1	-	2	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	exon	4547384	4547564	.	-	.	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	intron	4547565	4547765	.	-	.	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	CDS	4547766	4547938	1	-	1	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	exon	4547766	4547938	.	-	.	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	intron	4547939	4548304	.	-	.	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	CDS	4548305	4548609	0.89	-	0	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	exon	4548305	4548609	.	-	.	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
Ledus.S3	AUGUSTUS	start_codon	4548607	4548609	.	-	0	transcript_id "Ledus.S3G056900.t1"; gene_id "Ledus.S3G056900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8862.t1 is derived from g9892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2344614	2345290	.	+	.	Ledus.S3G033900
Ledus.S3	AUGUSTUS	transcript	2344614	2345290	.	+	.	transcript_id "Ledus.S3G033900.t1"; gene_id "Ledus.S3G033900"
Ledus.S3	AUGUSTUS	start_codon	2344614	2344616	.	+	0	transcript_id "Ledus.S3G033900.t1"; gene_id "Ledus.S3G033900"
Ledus.S3	AUGUSTUS	CDS	2344614	2344669	0.44	+	0	transcript_id "Ledus.S3G033900.t1"; gene_id "Ledus.S3G033900"
Ledus.S3	AUGUSTUS	exon	2344614	2344669	.	+	.	transcript_id "Ledus.S3G033900.t1"; gene_id "Ledus.S3G033900"
Ledus.S3	AUGUSTUS	intron	2344670	2344764	.	+	.	transcript_id "Ledus.S3G033900.t1"; gene_id "Ledus.S3G033900"
Ledus.S3	AUGUSTUS	CDS	2344765	2344870	0.91	+	1	transcript_id "Ledus.S3G033900.t1"; gene_id "Ledus.S3G033900"
Ledus.S3	AUGUSTUS	exon	2344765	2344870	.	+	.	transcript_id "Ledus.S3G033900.t1"; gene_id "Ledus.S3G033900"
Ledus.S3	AUGUSTUS	intron	2344871	2344963	.	+	.	transcript_id "Ledus.S3G033900.t1"; gene_id "Ledus.S3G033900"
Ledus.S3	AUGUSTUS	CDS	2344964	2345290	0.91	+	0	transcript_id "Ledus.S3G033900.t1"; gene_id "Ledus.S3G033900"
Ledus.S3	AUGUSTUS	exon	2344964	2345290	.	+	.	transcript_id "Ledus.S3G033900.t1"; gene_id "Ledus.S3G033900"
Ledus.S3	AUGUSTUS	stop_codon	2345291	2345293	.	+	0	transcript_id "Ledus.S3G033900.t1"; gene_id "Ledus.S3G033900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7779.t1 is derived from g12450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6503803	6504990	.	+	.	Ledus.S5G055700
Ledus.S5	AUGUSTUS	transcript	6503803	6504990	.	+	.	transcript_id "Ledus.S5G055700.t1"; gene_id "Ledus.S5G055700"
Ledus.S5	AUGUSTUS	start_codon	6503803	6503805	.	+	0	transcript_id "Ledus.S5G055700.t1"; gene_id "Ledus.S5G055700"
Ledus.S5	AUGUSTUS	CDS	6503803	6504990	0.81	+	0	transcript_id "Ledus.S5G055700.t1"; gene_id "Ledus.S5G055700"
Ledus.S5	AUGUSTUS	exon	6503803	6504990	.	+	.	transcript_id "Ledus.S5G055700.t1"; gene_id "Ledus.S5G055700"
Ledus.S5	AUGUSTUS	stop_codon	6504991	6504993	.	+	0	transcript_id "Ledus.S5G055700.t1"; gene_id "Ledus.S5G055700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12929.t1 is derived from g4421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	371824	373304	.	+	.	Ledus.C9G003700
Ledus.C9	AUGUSTUS	transcript	371824	373304	.	+	.	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	start_codon	371824	371826	.	+	0	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	CDS	371824	371924	0.28	+	0	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	exon	371824	371924	.	+	.	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	intron	371925	372010	.	+	.	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	CDS	372011	372137	0.65	+	1	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	exon	372011	372137	.	+	.	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	intron	372138	372399	.	+	.	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	CDS	372400	372456	0.86	+	0	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	exon	372400	372456	.	+	.	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	intron	372457	372586	.	+	.	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	CDS	372587	372856	0.57	+	0	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	exon	372587	372856	.	+	.	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	intron	372857	372956	.	+	.	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	CDS	372957	373304	1	+	0	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	exon	372957	373304	.	+	.	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
Ledus.C9	AUGUSTUS	stop_codon	373305	373307	.	+	0	transcript_id "Ledus.C9G003700.t1"; gene_id "Ledus.C9G003700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7753.t1 is derived from g12424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6012145	6015729	.	+	.	Ledus.S5G053100
Ledus.S5	AUGUSTUS	transcript	6012145	6015729	.	+	.	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	start_codon	6012145	6012147	.	+	0	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	CDS	6012145	6012263	0.62	+	0	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	exon	6012145	6012263	.	+	.	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	intron	6012264	6012355	.	+	.	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	CDS	6012356	6012610	0.69	+	1	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	exon	6012356	6012610	.	+	.	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	intron	6012611	6012727	.	+	.	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	CDS	6012728	6012808	0.81	+	1	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	exon	6012728	6012808	.	+	.	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	intron	6012809	6012881	.	+	.	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	CDS	6012882	6013972	0.98	+	1	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	exon	6012882	6013972	.	+	.	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	intron	6013973	6014143	.	+	.	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	CDS	6014144	6015729	1	+	2	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	exon	6014144	6015729	.	+	.	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
Ledus.S5	AUGUSTUS	stop_codon	6015730	6015732	.	+	0	transcript_id "Ledus.S5G053100.t1"; gene_id "Ledus.S5G053100"
# This transcript jg509.t2 is derived from g7370.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg509.t3 is derived from g7370.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg510.t1 is derived from g7371.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2997393	2998108	.	+	.	Ledus.S2G039200
Ledus.S2	AUGUSTUS	transcript	2997393	2998108	.	+	.	transcript_id "Ledus.S2G039200.t1"; gene_id "Ledus.S2G039200"
Ledus.S2	AUGUSTUS	start_codon	2997393	2997395	.	+	0	transcript_id "Ledus.S2G039200.t1"; gene_id "Ledus.S2G039200"
Ledus.S2	AUGUSTUS	CDS	2997393	2997401	0.97	+	0	transcript_id "Ledus.S2G039200.t1"; gene_id "Ledus.S2G039200"
Ledus.S2	AUGUSTUS	exon	2997393	2997401	.	+	.	transcript_id "Ledus.S2G039200.t1"; gene_id "Ledus.S2G039200"
Ledus.S2	AUGUSTUS	intron	2997402	2997862	.	+	.	transcript_id "Ledus.S2G039200.t1"; gene_id "Ledus.S2G039200"
Ledus.S2	AUGUSTUS	CDS	2997863	2998108	0.85	+	0	transcript_id "Ledus.S2G039200.t1"; gene_id "Ledus.S2G039200"
Ledus.S2	AUGUSTUS	exon	2997863	2998108	.	+	.	transcript_id "Ledus.S2G039200.t1"; gene_id "Ledus.S2G039200"
Ledus.S2	AUGUSTUS	stop_codon	2998109	2998111	.	+	0	transcript_id "Ledus.S2G039200.t1"; gene_id "Ledus.S2G039200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10329.t1 is derived from g11359.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14239179	14242880	.	+	.	Ledus.S3G180600
Ledus.S3	AUGUSTUS	transcript	14239179	14242880	.	+	.	transcript_id "Ledus.S3G180600.t1"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	start_codon	14239179	14239181	.	+	0	transcript_id "Ledus.S3G180600.t1"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	CDS	14239179	14242059	0.39	+	0	transcript_id "Ledus.S3G180600.t1"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	exon	14239179	14242059	.	+	.	transcript_id "Ledus.S3G180600.t1"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	intron	14242060	14242604	.	+	.	transcript_id "Ledus.S3G180600.t1"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	CDS	14242605	14242651	0.74	+	2	transcript_id "Ledus.S3G180600.t1"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	exon	14242605	14242651	.	+	.	transcript_id "Ledus.S3G180600.t1"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	intron	14242652	14242868	.	+	.	transcript_id "Ledus.S3G180600.t1"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	CDS	14242869	14242880	0.98	+	0	transcript_id "Ledus.S3G180600.t1"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	exon	14242869	14242880	.	+	.	transcript_id "Ledus.S3G180600.t1"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	stop_codon	14242881	14242883	.	+	0	transcript_id "Ledus.S3G180600.t1"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	transcript	14239179	14242865	.	+	.	transcript_id "Ledus.S3G180600.t2"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	start_codon	14239179	14239181	.	+	0	transcript_id "Ledus.S3G180600.t2"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	CDS	14239179	14242059	0.53	+	0	transcript_id "Ledus.S3G180600.t2"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	exon	14239179	14242059	.	+	.	transcript_id "Ledus.S3G180600.t2"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	intron	14242060	14242604	.	+	.	transcript_id "Ledus.S3G180600.t2"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	CDS	14242605	14242651	0.53	+	2	transcript_id "Ledus.S3G180600.t2"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	exon	14242605	14242651	.	+	.	transcript_id "Ledus.S3G180600.t2"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	intron	14242652	14242811	.	+	.	transcript_id "Ledus.S3G180600.t2"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	CDS	14242812	14242865	0.64	+	0	transcript_id "Ledus.S3G180600.t2"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	exon	14242812	14242865	.	+	.	transcript_id "Ledus.S3G180600.t2"; gene_id "Ledus.S3G180600"
Ledus.S3	AUGUSTUS	stop_codon	14242866	14242868	.	+	0	transcript_id "Ledus.S3G180600.t2"; gene_id "Ledus.S3G180600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg486.t1 is derived from g7347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2844584	2847297	.	-	.	Ledus.S2G036800
Ledus.S2	AUGUSTUS	transcript	2844584	2847297	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	stop_codon	2844581	2844583	.	-	0	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	CDS	2844584	2844727	1	-	0	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	exon	2844584	2844727	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	intron	2844728	2844805	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	CDS	2844806	2844941	1	-	1	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	exon	2844806	2844941	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	intron	2844942	2845024	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	CDS	2845025	2845122	1	-	0	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	exon	2845025	2845122	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	intron	2845123	2845213	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	CDS	2845214	2845291	1	-	0	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	exon	2845214	2845291	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	intron	2845292	2845378	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	CDS	2845379	2845448	1	-	1	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	exon	2845379	2845448	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	intron	2845449	2845598	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	CDS	2845599	2845663	1	-	0	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	exon	2845599	2845663	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	intron	2845664	2845757	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	CDS	2845758	2845838	1	-	0	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	exon	2845758	2845838	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	intron	2845839	2845939	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	CDS	2845940	2846053	0.6	-	0	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	exon	2845940	2846053	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	intron	2846054	2846144	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	CDS	2846145	2846225	1	-	0	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	exon	2846145	2846225	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	intron	2846226	2846755	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	CDS	2846756	2846831	1	-	1	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	exon	2846756	2846831	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	intron	2846832	2846909	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	CDS	2846910	2847148	1	-	0	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	exon	2846910	2847148	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	intron	2847149	2847231	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	CDS	2847232	2847297	0.97	-	0	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	exon	2847232	2847297	.	-	.	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
Ledus.S2	AUGUSTUS	start_codon	2847295	2847297	.	-	0	transcript_id "Ledus.S2G036800.t1"; gene_id "Ledus.S2G036800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7438.t1 is derived from g12109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2684817	2686743	.	+	.	Ledus.S5G021600
Ledus.S5	AUGUSTUS	transcript	2684817	2686743	.	+	.	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	start_codon	2684817	2684819	.	+	0	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	CDS	2684817	2685175	0.77	+	0	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	exon	2684817	2685175	.	+	.	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	intron	2685176	2685735	.	+	.	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	CDS	2685736	2685762	1	+	1	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	exon	2685736	2685762	.	+	.	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	intron	2685763	2685929	.	+	.	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	CDS	2685930	2686052	1	+	1	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	exon	2685930	2686052	.	+	.	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	intron	2686053	2686253	.	+	.	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	CDS	2686254	2686512	1	+	1	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	exon	2686254	2686512	.	+	.	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	intron	2686513	2686611	.	+	.	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	CDS	2686612	2686743	0.99	+	0	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	exon	2686612	2686743	.	+	.	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
Ledus.S5	AUGUSTUS	stop_codon	2686744	2686746	.	+	0	transcript_id "Ledus.S5G021600.t1"; gene_id "Ledus.S5G021600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9627.t1 is derived from g10657.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8455996	8457478	.	-	.	Ledus.S3G110400
Ledus.S3	AUGUSTUS	transcript	8455996	8457478	.	-	.	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	stop_codon	8455993	8455995	.	-	0	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	CDS	8455996	8456222	0.97	-	2	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	exon	8455996	8456222	.	-	.	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	intron	8456223	8456322	.	-	.	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	CDS	8456323	8456575	1	-	0	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	exon	8456323	8456575	.	-	.	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	intron	8456576	8456658	.	-	.	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	CDS	8456659	8456895	1	-	0	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	exon	8456659	8456895	.	-	.	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	intron	8456896	8457041	.	-	.	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	CDS	8457042	8457181	1	-	2	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	exon	8457042	8457181	.	-	.	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	intron	8457182	8457258	.	-	.	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	CDS	8457259	8457478	0.59	-	0	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	exon	8457259	8457478	.	-	.	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
Ledus.S3	AUGUSTUS	start_codon	8457476	8457478	.	-	0	transcript_id "Ledus.S3G110400.t1"; gene_id "Ledus.S3G110400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12013.t1 is derived from g5632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8678613	8678891	.	+	.	Ledus.S4G116900
Ledus.S4	AUGUSTUS	transcript	8678613	8678891	.	+	.	transcript_id "Ledus.S4G116900.t1"; gene_id "Ledus.S4G116900"
Ledus.S4	AUGUSTUS	start_codon	8678613	8678615	.	+	0	transcript_id "Ledus.S4G116900.t1"; gene_id "Ledus.S4G116900"
Ledus.S4	AUGUSTUS	CDS	8678613	8678636	0.98	+	0	transcript_id "Ledus.S4G116900.t1"; gene_id "Ledus.S4G116900"
Ledus.S4	AUGUSTUS	exon	8678613	8678636	.	+	.	transcript_id "Ledus.S4G116900.t1"; gene_id "Ledus.S4G116900"
Ledus.S4	AUGUSTUS	intron	8678637	8678711	.	+	.	transcript_id "Ledus.S4G116900.t1"; gene_id "Ledus.S4G116900"
Ledus.S4	AUGUSTUS	CDS	8678712	8678891	1	+	0	transcript_id "Ledus.S4G116900.t1"; gene_id "Ledus.S4G116900"
Ledus.S4	AUGUSTUS	exon	8678712	8678891	.	+	.	transcript_id "Ledus.S4G116900.t1"; gene_id "Ledus.S4G116900"
Ledus.S4	AUGUSTUS	stop_codon	8678892	8678894	.	+	0	transcript_id "Ledus.S4G116900.t1"; gene_id "Ledus.S4G116900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2502.t1 is derived from g9365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18493103	18494128	.	-	.	Ledus.S2G238400
Ledus.S2	AUGUSTUS	transcript	18493103	18494128	.	-	.	transcript_id "Ledus.S2G238400.t1"; gene_id "Ledus.S2G238400"
Ledus.S2	AUGUSTUS	stop_codon	18493100	18493102	.	-	0	transcript_id "Ledus.S2G238400.t1"; gene_id "Ledus.S2G238400"
Ledus.S2	AUGUSTUS	CDS	18493103	18494128	1	-	0	transcript_id "Ledus.S2G238400.t1"; gene_id "Ledus.S2G238400"
Ledus.S2	AUGUSTUS	exon	18493103	18494128	.	-	.	transcript_id "Ledus.S2G238400.t1"; gene_id "Ledus.S2G238400"
Ledus.S2	AUGUSTUS	start_codon	18494126	18494128	.	-	0	transcript_id "Ledus.S2G238400.t1"; gene_id "Ledus.S2G238400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8444.t1 is derived from g13116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11711994	11713613	.	-	.	Ledus.S5G122200
Ledus.S5	AUGUSTUS	transcript	11711994	11713613	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	stop_codon	11711991	11711993	.	-	0	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	CDS	11711994	11712155	0.92	-	0	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	exon	11711994	11712155	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	intron	11712156	11712236	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	CDS	11712237	11712283	1	-	2	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	exon	11712237	11712283	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	intron	11712284	11712381	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	CDS	11712382	11712472	1	-	0	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	exon	11712382	11712472	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	intron	11712473	11712570	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	CDS	11712571	11712649	1	-	1	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	exon	11712571	11712649	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	intron	11712650	11712727	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	CDS	11712728	11712884	1	-	2	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	exon	11712728	11712884	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	intron	11712885	11712980	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	CDS	11712981	11713060	0.57	-	1	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	exon	11712981	11713060	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	intron	11713061	11713177	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	CDS	11713178	11713409	0.66	-	2	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	exon	11713178	11713409	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	intron	11713410	11713492	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	CDS	11713493	11713613	0.68	-	0	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	exon	11713493	11713613	.	-	.	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
Ledus.S5	AUGUSTUS	start_codon	11713611	11713613	.	-	0	transcript_id "Ledus.S5G122200.t1"; gene_id "Ledus.S5G122200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9479.t1 is derived from g10509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7279603	7283265	.	+	.	Ledus.S3G095600
Ledus.S3	AUGUSTUS	transcript	7279603	7283265	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	start_codon	7279603	7279605	.	+	0	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7279603	7279680	0.61	+	0	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7279603	7279680	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7279681	7279967	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7279968	7280147	0.7	+	0	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7279968	7280147	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7280148	7280251	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7280252	7280369	0.88	+	0	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7280252	7280369	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7280370	7280461	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7280462	7280613	1	+	2	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7280462	7280613	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7280614	7280702	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7280703	7280951	1	+	0	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7280703	7280951	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7280952	7281109	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7281110	7281257	1	+	0	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7281110	7281257	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7281258	7281352	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7281353	7281426	1	+	2	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7281353	7281426	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7281427	7281545	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7281546	7281632	1	+	0	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7281546	7281632	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7281633	7281723	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7281724	7281800	0.99	+	0	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7281724	7281800	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7281801	7282009	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7282010	7282081	0.94	+	1	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7282010	7282081	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7282082	7282245	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7282246	7282646	0.85	+	1	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7282246	7282646	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7282647	7282960	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7282961	7283071	0.8	+	2	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7282961	7283071	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7283072	7283215	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7283216	7283265	0.89	+	2	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7283216	7283265	.	+	.	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	stop_codon	7283266	7283268	.	+	0	transcript_id "Ledus.S3G095600.t1"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	transcript	7279603	7283265	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	start_codon	7279603	7279605	.	+	0	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7279603	7279680	0.59	+	0	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7279603	7279680	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7279681	7279967	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7279968	7280147	0.72	+	0	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7279968	7280147	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7280148	7280251	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7280252	7280369	0.91	+	0	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7280252	7280369	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7280370	7280461	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7280462	7280613	1	+	2	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7280462	7280613	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7280614	7280702	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7280703	7280951	1	+	0	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7280703	7280951	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7280952	7281109	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7281110	7281257	1	+	0	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7281110	7281257	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7281258	7281352	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7281353	7281426	1	+	2	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7281353	7281426	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7281427	7281545	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7281546	7281632	1	+	0	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7281546	7281632	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7281633	7281723	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7281724	7281800	1	+	0	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7281724	7281800	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7281801	7282009	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7282010	7282081	0.97	+	1	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7282010	7282081	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7282082	7282248	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7282249	7282646	0.8	+	1	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7282249	7282646	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7282647	7282960	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7282961	7283071	0.72	+	2	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7282961	7283071	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	intron	7283072	7283215	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	CDS	7283216	7283265	0.78	+	2	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	exon	7283216	7283265	.	+	.	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
Ledus.S3	AUGUSTUS	stop_codon	7283266	7283268	.	+	0	transcript_id "Ledus.S3G095600.t2"; gene_id "Ledus.S3G095600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg922.t1 is derived from g7783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6179263	6179753	.	+	.	Ledus.S2G080400
Ledus.S2	AUGUSTUS	transcript	6179263	6179753	.	+	.	transcript_id "Ledus.S2G080400.t1"; gene_id "Ledus.S2G080400"
Ledus.S2	AUGUSTUS	start_codon	6179263	6179265	.	+	0	transcript_id "Ledus.S2G080400.t1"; gene_id "Ledus.S2G080400"
Ledus.S2	AUGUSTUS	CDS	6179263	6179424	0.87	+	0	transcript_id "Ledus.S2G080400.t1"; gene_id "Ledus.S2G080400"
Ledus.S2	AUGUSTUS	exon	6179263	6179424	.	+	.	transcript_id "Ledus.S2G080400.t1"; gene_id "Ledus.S2G080400"
Ledus.S2	AUGUSTUS	intron	6179425	6179543	.	+	.	transcript_id "Ledus.S2G080400.t1"; gene_id "Ledus.S2G080400"
Ledus.S2	AUGUSTUS	CDS	6179544	6179753	1	+	0	transcript_id "Ledus.S2G080400.t1"; gene_id "Ledus.S2G080400"
Ledus.S2	AUGUSTUS	exon	6179544	6179753	.	+	.	transcript_id "Ledus.S2G080400.t1"; gene_id "Ledus.S2G080400"
Ledus.S2	AUGUSTUS	stop_codon	6179754	6179756	.	+	0	transcript_id "Ledus.S2G080400.t1"; gene_id "Ledus.S2G080400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5041.t1 is derived from g2480.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21255882	21259121	.	-	.	Ledus.S1G246200
Ledus.S1	AUGUSTUS	transcript	21255882	21259121	.	-	.	transcript_id "Ledus.S1G246200.t1"; gene_id "Ledus.S1G246200"
Ledus.S1	AUGUSTUS	stop_codon	21255879	21255881	.	-	0	transcript_id "Ledus.S1G246200.t1"; gene_id "Ledus.S1G246200"
Ledus.S1	AUGUSTUS	CDS	21255882	21259121	0.89	-	0	transcript_id "Ledus.S1G246200.t1"; gene_id "Ledus.S1G246200"
Ledus.S1	AUGUSTUS	exon	21255882	21259121	.	-	.	transcript_id "Ledus.S1G246200.t1"; gene_id "Ledus.S1G246200"
Ledus.S1	AUGUSTUS	start_codon	21259119	21259121	.	-	0	transcript_id "Ledus.S1G246200.t1"; gene_id "Ledus.S1G246200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6827.t1 is derived from g4271.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34548329	34549001	.	+	.	Ledus.S1G424800
Ledus.S1	AUGUSTUS	transcript	34548329	34549001	.	+	.	transcript_id "Ledus.S1G424800.t1"; gene_id "Ledus.S1G424800"
Ledus.S1	AUGUSTUS	start_codon	34548329	34548331	.	+	0	transcript_id "Ledus.S1G424800.t1"; gene_id "Ledus.S1G424800"
Ledus.S1	AUGUSTUS	CDS	34548329	34548600	0.3	+	0	transcript_id "Ledus.S1G424800.t1"; gene_id "Ledus.S1G424800"
Ledus.S1	AUGUSTUS	exon	34548329	34548600	.	+	.	transcript_id "Ledus.S1G424800.t1"; gene_id "Ledus.S1G424800"
Ledus.S1	AUGUSTUS	intron	34548601	34548727	.	+	.	transcript_id "Ledus.S1G424800.t1"; gene_id "Ledus.S1G424800"
Ledus.S1	AUGUSTUS	CDS	34548728	34549001	0.87	+	1	transcript_id "Ledus.S1G424800.t1"; gene_id "Ledus.S1G424800"
Ledus.S1	AUGUSTUS	exon	34548728	34549001	.	+	.	transcript_id "Ledus.S1G424800.t1"; gene_id "Ledus.S1G424800"
Ledus.S1	AUGUSTUS	stop_codon	34549002	34549004	.	+	0	transcript_id "Ledus.S1G424800.t1"; gene_id "Ledus.S1G424800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3821.t1 is derived from g1257.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12745823	12746810	.	-	.	Ledus.S1G124200
Ledus.S1	AUGUSTUS	transcript	12745823	12746702	.	-	.	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	stop_codon	12745820	12745822	.	-	0	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	CDS	12745823	12745823	0.76	-	1	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	exon	12745823	12745823	.	-	.	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	intron	12745824	12745912	.	-	.	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	CDS	12745913	12745962	0.76	-	0	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	exon	12745913	12745962	.	-	.	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	intron	12745963	12746304	.	-	.	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	CDS	12746305	12746384	0.73	-	2	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	exon	12746305	12746384	.	-	.	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	intron	12746385	12746456	.	-	.	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	CDS	12746457	12746466	0.59	-	0	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	exon	12746457	12746466	.	-	.	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	intron	12746467	12746542	.	-	.	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	CDS	12746543	12746608	0.67	-	0	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	exon	12746543	12746608	.	-	.	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	intron	12746609	12746699	.	-	.	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	CDS	12746700	12746702	1	-	0	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	exon	12746700	12746702	.	-	.	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	start_codon	12746700	12746702	.	-	0	transcript_id "Ledus.S1G124200.t1"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	transcript	12745823	12746810	.	-	.	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	stop_codon	12745820	12745822	.	-	0	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	CDS	12745823	12745823	0.71	-	1	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	exon	12745823	12745823	.	-	.	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	intron	12745824	12745912	.	-	.	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	CDS	12745913	12745962	0.71	-	0	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	exon	12745913	12745962	.	-	.	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	intron	12745963	12746304	.	-	.	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	CDS	12746305	12746384	0.69	-	2	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	exon	12746305	12746384	.	-	.	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	intron	12746385	12746456	.	-	.	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	CDS	12746457	12746466	0.6	-	0	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	exon	12746457	12746466	.	-	.	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	intron	12746467	12746542	.	-	.	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	CDS	12746543	12746608	0.68	-	0	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	exon	12746543	12746608	.	-	.	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	intron	12746609	12746759	.	-	.	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	CDS	12746760	12746810	1	-	0	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	exon	12746760	12746810	.	-	.	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
Ledus.S1	AUGUSTUS	start_codon	12746808	12746810	.	-	0	transcript_id "Ledus.S1G124200.t2"; gene_id "Ledus.S1G124200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10056.t1 is derived from g11086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12242027	12242482	.	-	.	Ledus.S3G153300
Ledus.S3	AUGUSTUS	transcript	12242027	12242482	.	-	.	transcript_id "Ledus.S3G153300.t1"; gene_id "Ledus.S3G153300"
Ledus.S3	AUGUSTUS	stop_codon	12242024	12242026	.	-	0	transcript_id "Ledus.S3G153300.t1"; gene_id "Ledus.S3G153300"
Ledus.S3	AUGUSTUS	CDS	12242027	12242096	0.96	-	1	transcript_id "Ledus.S3G153300.t1"; gene_id "Ledus.S3G153300"
Ledus.S3	AUGUSTUS	exon	12242027	12242096	.	-	.	transcript_id "Ledus.S3G153300.t1"; gene_id "Ledus.S3G153300"
Ledus.S3	AUGUSTUS	intron	12242097	12242213	.	-	.	transcript_id "Ledus.S3G153300.t1"; gene_id "Ledus.S3G153300"
Ledus.S3	AUGUSTUS	CDS	12242214	12242482	0.98	-	0	transcript_id "Ledus.S3G153300.t1"; gene_id "Ledus.S3G153300"
Ledus.S3	AUGUSTUS	exon	12242214	12242482	.	-	.	transcript_id "Ledus.S3G153300.t1"; gene_id "Ledus.S3G153300"
Ledus.S3	AUGUSTUS	start_codon	12242480	12242482	.	-	0	transcript_id "Ledus.S3G153300.t1"; gene_id "Ledus.S3G153300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9002.t1 is derived from g10032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3801216	3802669	.	-	.	Ledus.S3G047900
Ledus.S3	AUGUSTUS	transcript	3801216	3802669	.	-	.	transcript_id "Ledus.S3G047900.t1"; gene_id "Ledus.S3G047900"
Ledus.S3	AUGUSTUS	stop_codon	3801213	3801215	.	-	0	transcript_id "Ledus.S3G047900.t1"; gene_id "Ledus.S3G047900"
Ledus.S3	AUGUSTUS	CDS	3801216	3802109	0.97	-	0	transcript_id "Ledus.S3G047900.t1"; gene_id "Ledus.S3G047900"
Ledus.S3	AUGUSTUS	exon	3801216	3802109	.	-	.	transcript_id "Ledus.S3G047900.t1"; gene_id "Ledus.S3G047900"
Ledus.S3	AUGUSTUS	intron	3802110	3802216	.	-	.	transcript_id "Ledus.S3G047900.t1"; gene_id "Ledus.S3G047900"
Ledus.S3	AUGUSTUS	CDS	3802217	3802669	0.46	-	0	transcript_id "Ledus.S3G047900.t1"; gene_id "Ledus.S3G047900"
Ledus.S3	AUGUSTUS	exon	3802217	3802669	.	-	.	transcript_id "Ledus.S3G047900.t1"; gene_id "Ledus.S3G047900"
Ledus.S3	AUGUSTUS	start_codon	3802667	3802669	.	-	0	transcript_id "Ledus.S3G047900.t1"; gene_id "Ledus.S3G047900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9595.t1 is derived from g10625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8197578	8197859	.	+	.	Ledus.S3G107200
Ledus.S3	AUGUSTUS	transcript	8197578	8197859	.	+	.	transcript_id "Ledus.S3G107200.t1"; gene_id "Ledus.S3G107200"
Ledus.S3	AUGUSTUS	start_codon	8197578	8197580	.	+	0	transcript_id "Ledus.S3G107200.t1"; gene_id "Ledus.S3G107200"
Ledus.S3	AUGUSTUS	CDS	8197578	8197859	0.87	+	0	transcript_id "Ledus.S3G107200.t1"; gene_id "Ledus.S3G107200"
Ledus.S3	AUGUSTUS	exon	8197578	8197859	.	+	.	transcript_id "Ledus.S3G107200.t1"; gene_id "Ledus.S3G107200"
Ledus.S3	AUGUSTUS	stop_codon	8197860	8197862	.	+	0	transcript_id "Ledus.S3G107200.t1"; gene_id "Ledus.S3G107200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2093.t1 is derived from g8956.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14701790	14703290	.	+	.	Ledus.S2G197500
Ledus.S2	AUGUSTUS	transcript	14701790	14703290	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	start_codon	14701790	14701792	.	+	0	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	CDS	14701790	14701938	0.67	+	0	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	exon	14701790	14701938	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	intron	14701939	14702106	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	CDS	14702107	14702242	1	+	1	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	exon	14702107	14702242	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	intron	14702243	14702356	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	CDS	14702357	14702404	1	+	0	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	exon	14702357	14702404	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	intron	14702405	14702614	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	CDS	14702615	14702661	1	+	0	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	exon	14702615	14702661	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	intron	14702662	14702777	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	CDS	14702778	14702844	1	+	1	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	exon	14702778	14702844	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	intron	14702845	14702958	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	CDS	14702959	14703002	1	+	0	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	exon	14702959	14703002	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	intron	14703003	14703083	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	CDS	14703084	14703141	0.72	+	1	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	exon	14703084	14703141	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	intron	14703142	14703242	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	CDS	14703243	14703290	0.99	+	0	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	exon	14703243	14703290	.	+	.	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
Ledus.S2	AUGUSTUS	stop_codon	14703291	14703293	.	+	0	transcript_id "Ledus.S2G197500.t1"; gene_id "Ledus.S2G197500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2264.t1 is derived from g9127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16714799	16715062	.	-	.	Ledus.S2G214600
Ledus.S2	AUGUSTUS	transcript	16714799	16715062	.	-	.	transcript_id "Ledus.S2G214600.t1"; gene_id "Ledus.S2G214600"
Ledus.S2	AUGUSTUS	stop_codon	16714796	16714798	.	-	0	transcript_id "Ledus.S2G214600.t1"; gene_id "Ledus.S2G214600"
Ledus.S2	AUGUSTUS	CDS	16714799	16715062	0.66	-	0	transcript_id "Ledus.S2G214600.t1"; gene_id "Ledus.S2G214600"
Ledus.S2	AUGUSTUS	exon	16714799	16715062	.	-	.	transcript_id "Ledus.S2G214600.t1"; gene_id "Ledus.S2G214600"
Ledus.S2	AUGUSTUS	start_codon	16715060	16715062	.	-	0	transcript_id "Ledus.S2G214600.t1"; gene_id "Ledus.S2G214600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9502.t1 is derived from g10532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7473275	7473520	.	+	.	Ledus.S3G097900
Ledus.S3	AUGUSTUS	transcript	7473275	7473520	.	+	.	transcript_id "Ledus.S3G097900.t1"; gene_id "Ledus.S3G097900"
Ledus.S3	AUGUSTUS	start_codon	7473275	7473277	.	+	0	transcript_id "Ledus.S3G097900.t1"; gene_id "Ledus.S3G097900"
Ledus.S3	AUGUSTUS	CDS	7473275	7473520	0.55	+	0	transcript_id "Ledus.S3G097900.t1"; gene_id "Ledus.S3G097900"
Ledus.S3	AUGUSTUS	exon	7473275	7473520	.	+	.	transcript_id "Ledus.S3G097900.t1"; gene_id "Ledus.S3G097900"
Ledus.S3	AUGUSTUS	stop_codon	7473521	7473523	.	+	0	transcript_id "Ledus.S3G097900.t1"; gene_id "Ledus.S3G097900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11357.t1 is derived from g4975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3781785	3782075	.	-	.	Ledus.S4G051300
Ledus.S4	AUGUSTUS	transcript	3781785	3782075	.	-	.	transcript_id "Ledus.S4G051300.t1"; gene_id "Ledus.S4G051300"
Ledus.S4	AUGUSTUS	stop_codon	3781782	3781784	.	-	0	transcript_id "Ledus.S4G051300.t1"; gene_id "Ledus.S4G051300"
Ledus.S4	AUGUSTUS	CDS	3781785	3782075	0.82	-	0	transcript_id "Ledus.S4G051300.t1"; gene_id "Ledus.S4G051300"
Ledus.S4	AUGUSTUS	exon	3781785	3782075	.	-	.	transcript_id "Ledus.S4G051300.t1"; gene_id "Ledus.S4G051300"
Ledus.S4	AUGUSTUS	start_codon	3782073	3782075	.	-	0	transcript_id "Ledus.S4G051300.t1"; gene_id "Ledus.S4G051300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10974.t1 is derived from g4592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	956240	959380	.	+	.	Ledus.S4G013000
Ledus.S4	AUGUSTUS	transcript	956240	959380	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	start_codon	956240	956242	.	+	0	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	CDS	956240	956494	0.93	+	0	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	exon	956240	956494	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	intron	956495	956582	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	CDS	956583	956699	1	+	0	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	exon	956583	956699	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	intron	956700	956779	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	CDS	956780	956880	1	+	0	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	exon	956780	956880	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	intron	956881	957112	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	CDS	957113	957184	1	+	1	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	exon	957113	957184	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	intron	957185	957349	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	CDS	957350	957431	1	+	1	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	exon	957350	957431	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	intron	957432	957585	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	CDS	957586	957666	1	+	0	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	exon	957586	957666	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	intron	957667	957883	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	CDS	957884	957922	1	+	0	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	exon	957884	957922	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	intron	957923	958088	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	CDS	958089	958160	1	+	0	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	exon	958089	958160	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	intron	958161	959003	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	CDS	959004	959144	1	+	0	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	exon	959004	959144	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	intron	959145	959221	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	CDS	959222	959380	0.98	+	0	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	exon	959222	959380	.	+	.	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
Ledus.S4	AUGUSTUS	stop_codon	959381	959383	.	+	0	transcript_id "Ledus.S4G013000.t1"; gene_id "Ledus.S4G013000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3175.t1 is derived from g610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6585361	6586218	.	-	.	Ledus.S1G059600
Ledus.S1	AUGUSTUS	transcript	6585361	6586218	.	-	.	transcript_id "Ledus.S1G059600.t1"; gene_id "Ledus.S1G059600"
Ledus.S1	AUGUSTUS	stop_codon	6585358	6585360	.	-	0	transcript_id "Ledus.S1G059600.t1"; gene_id "Ledus.S1G059600"
Ledus.S1	AUGUSTUS	CDS	6585361	6586218	0.85	-	0	transcript_id "Ledus.S1G059600.t1"; gene_id "Ledus.S1G059600"
Ledus.S1	AUGUSTUS	exon	6585361	6586218	.	-	.	transcript_id "Ledus.S1G059600.t1"; gene_id "Ledus.S1G059600"
Ledus.S1	AUGUSTUS	start_codon	6586216	6586218	.	-	0	transcript_id "Ledus.S1G059600.t1"; gene_id "Ledus.S1G059600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8885.t1 is derived from g9915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2825841	2834474	.	-	.	Ledus.S3G036200
Ledus.S3	AUGUSTUS	transcript	2825841	2834474	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	stop_codon	2825838	2825840	.	-	0	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2825841	2826132	1	-	1	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2825841	2826132	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2826133	2826220	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2826221	2826328	1	-	1	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2826221	2826328	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2826329	2826432	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2826433	2826875	0.96	-	0	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2826433	2826875	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2826876	2826984	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2826985	2827033	1	-	1	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2826985	2827033	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2827034	2827132	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2827133	2829397	0.17	-	1	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2827133	2829397	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2829398	2829482	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2829483	2829646	0.55	-	0	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2829483	2829646	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2829647	2829757	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2829758	2833015	0.93	-	0	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2829758	2833015	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2833016	2833166	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2833167	2833230	0.92	-	1	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2833167	2833230	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2833231	2833360	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2833361	2833484	1	-	2	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2833361	2833484	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2833485	2833571	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2833572	2833612	1	-	1	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2833572	2833612	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2833613	2833704	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2833705	2833754	0.92	-	0	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2833705	2833754	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2833755	2833954	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2833955	2833976	0.3	-	1	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2833955	2833976	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2833977	2834172	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2834173	2834275	0.72	-	2	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2834173	2834275	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	intron	2834276	2834398	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	CDS	2834399	2834474	0.34	-	0	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	exon	2834399	2834474	.	-	.	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
Ledus.S3	AUGUSTUS	start_codon	2834472	2834474	.	-	0	transcript_id "Ledus.S3G036200.t1"; gene_id "Ledus.S3G036200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4555.t1 is derived from g1992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17661546	17663282	.	-	.	Ledus.S1G197600
Ledus.S1	AUGUSTUS	transcript	17661546	17663282	.	-	.	transcript_id "Ledus.S1G197600.t1"; gene_id "Ledus.S1G197600"
Ledus.S1	AUGUSTUS	stop_codon	17661543	17661545	.	-	0	transcript_id "Ledus.S1G197600.t1"; gene_id "Ledus.S1G197600"
Ledus.S1	AUGUSTUS	CDS	17661546	17663282	1	-	0	transcript_id "Ledus.S1G197600.t1"; gene_id "Ledus.S1G197600"
Ledus.S1	AUGUSTUS	exon	17661546	17663282	.	-	.	transcript_id "Ledus.S1G197600.t1"; gene_id "Ledus.S1G197600"
Ledus.S1	AUGUSTUS	start_codon	17663280	17663282	.	-	0	transcript_id "Ledus.S1G197600.t1"; gene_id "Ledus.S1G197600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7019.t1 is derived from g6550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	830343	832245	.	+	.	Ledus.C7G008000
Ledus.C7	AUGUSTUS	transcript	830343	832245	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	start_codon	830343	830345	.	+	0	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	830343	830488	0.65	+	0	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	830343	830488	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	830489	830627	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	830628	830803	0.67	+	1	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	830628	830803	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	830804	830915	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	830916	830980	0.82	+	2	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	830916	830980	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	830981	831109	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	831110	831220	0.97	+	0	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	831110	831220	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	831221	831339	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	831340	831495	0.99	+	0	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	831340	831495	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	831496	831601	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	831602	831802	0.97	+	0	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	831602	831802	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	831803	831896	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	831897	832053	1	+	0	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	831897	832053	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	832054	832144	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	832145	832245	0.99	+	2	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	832145	832245	.	+	.	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	stop_codon	832246	832248	.	+	0	transcript_id "Ledus.C7G008000.t1"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	transcript	830343	832245	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	start_codon	830343	830345	.	+	0	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	830343	830488	0.69	+	0	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	830343	830488	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	830489	830627	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	830628	830803	0.68	+	1	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	830628	830803	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	830804	830915	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	830916	830980	0.7	+	2	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	830916	830980	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	830981	831109	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	831110	831220	0.9	+	0	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	831110	831220	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	831221	831339	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	831340	831495	1	+	0	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	831340	831495	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	831496	831670	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	831671	831802	1	+	0	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	831671	831802	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	831803	831896	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	831897	832053	1	+	0	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	831897	832053	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	intron	832054	832144	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	CDS	832145	832245	1	+	2	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	exon	832145	832245	.	+	.	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
Ledus.C7	AUGUSTUS	stop_codon	832246	832248	.	+	0	transcript_id "Ledus.C7G008000.t2"; gene_id "Ledus.C7G008000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5053.t1 is derived from g2492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21328170	21328823	.	-	.	Ledus.S1G247400
Ledus.S1	AUGUSTUS	transcript	21328170	21328823	.	-	.	transcript_id "Ledus.S1G247400.t1"; gene_id "Ledus.S1G247400"
Ledus.S1	AUGUSTUS	stop_codon	21328167	21328169	.	-	0	transcript_id "Ledus.S1G247400.t1"; gene_id "Ledus.S1G247400"
Ledus.S1	AUGUSTUS	CDS	21328170	21328292	0.58	-	0	transcript_id "Ledus.S1G247400.t1"; gene_id "Ledus.S1G247400"
Ledus.S1	AUGUSTUS	exon	21328170	21328292	.	-	.	transcript_id "Ledus.S1G247400.t1"; gene_id "Ledus.S1G247400"
Ledus.S1	AUGUSTUS	intron	21328293	21328439	.	-	.	transcript_id "Ledus.S1G247400.t1"; gene_id "Ledus.S1G247400"
Ledus.S1	AUGUSTUS	CDS	21328440	21328532	1	-	0	transcript_id "Ledus.S1G247400.t1"; gene_id "Ledus.S1G247400"
Ledus.S1	AUGUSTUS	exon	21328440	21328532	.	-	.	transcript_id "Ledus.S1G247400.t1"; gene_id "Ledus.S1G247400"
Ledus.S1	AUGUSTUS	intron	21328533	21328790	.	-	.	transcript_id "Ledus.S1G247400.t1"; gene_id "Ledus.S1G247400"
Ledus.S1	AUGUSTUS	CDS	21328791	21328823	1	-	0	transcript_id "Ledus.S1G247400.t1"; gene_id "Ledus.S1G247400"
Ledus.S1	AUGUSTUS	exon	21328791	21328823	.	-	.	transcript_id "Ledus.S1G247400.t1"; gene_id "Ledus.S1G247400"
Ledus.S1	AUGUSTUS	start_codon	21328821	21328823	.	-	0	transcript_id "Ledus.S1G247400.t1"; gene_id "Ledus.S1G247400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12281.t1 is derived from g5901.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10830091	10832511	.	+	.	Ledus.S4G143700
Ledus.S4	AUGUSTUS	transcript	10830091	10832511	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	start_codon	10830091	10830093	.	+	0	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10830091	10830093	1	+	0	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10830091	10830093	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10830094	10830192	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10830193	10830312	1	+	0	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10830193	10830312	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10830313	10830410	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10830411	10830437	0.86	+	0	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10830411	10830437	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10830438	10831099	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10831100	10831167	0.99	+	0	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10831100	10831167	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10831168	10831343	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10831344	10831428	1	+	1	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10831344	10831428	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10831429	10831613	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10831614	10831673	1	+	0	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10831614	10831673	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10831674	10831819	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10831820	10831851	1	+	0	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10831820	10831851	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10831852	10832029	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10832030	10832124	0.32	+	1	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10832030	10832124	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10832125	10832218	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10832219	10832304	0.86	+	2	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10832219	10832304	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10832305	10832424	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10832425	10832511	0.84	+	0	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10832425	10832511	.	+	.	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	stop_codon	10832512	10832514	.	+	0	transcript_id "Ledus.S4G143700.t1"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	transcript	10830091	10832511	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	start_codon	10830091	10830093	.	+	0	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10830091	10830093	0.99	+	0	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10830091	10830093	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10830094	10830186	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10830187	10830312	0.99	+	0	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10830187	10830312	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10830313	10830410	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10830411	10830437	0.88	+	0	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10830411	10830437	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10830438	10831099	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10831100	10831167	0.98	+	0	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10831100	10831167	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10831168	10831343	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10831344	10831428	1	+	1	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10831344	10831428	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10831429	10831613	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10831614	10831673	1	+	0	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10831614	10831673	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10831674	10831819	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10831820	10831851	1	+	0	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10831820	10831851	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10831852	10832029	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10832030	10832124	0.27	+	1	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10832030	10832124	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10832125	10832218	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10832219	10832304	0.77	+	2	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10832219	10832304	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	intron	10832305	10832424	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	CDS	10832425	10832511	0.76	+	0	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	exon	10832425	10832511	.	+	.	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
Ledus.S4	AUGUSTUS	stop_codon	10832512	10832514	.	+	0	transcript_id "Ledus.S4G143700.t2"; gene_id "Ledus.S4G143700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4201.t1 is derived from g1637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15351412	15351969	.	-	.	Ledus.S1G162200
Ledus.S1	AUGUSTUS	transcript	15351412	15351969	.	-	.	transcript_id "Ledus.S1G162200.t1"; gene_id "Ledus.S1G162200"
Ledus.S1	AUGUSTUS	stop_codon	15351409	15351411	.	-	0	transcript_id "Ledus.S1G162200.t1"; gene_id "Ledus.S1G162200"
Ledus.S1	AUGUSTUS	CDS	15351412	15351969	0.76	-	0	transcript_id "Ledus.S1G162200.t1"; gene_id "Ledus.S1G162200"
Ledus.S1	AUGUSTUS	exon	15351412	15351969	.	-	.	transcript_id "Ledus.S1G162200.t1"; gene_id "Ledus.S1G162200"
Ledus.S1	AUGUSTUS	start_codon	15351967	15351969	.	-	0	transcript_id "Ledus.S1G162200.t1"; gene_id "Ledus.S1G162200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11778.t1 is derived from g5397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6734316	6735632	.	-	.	Ledus.S4G093400
Ledus.S4	AUGUSTUS	transcript	6734316	6735632	.	-	.	transcript_id "Ledus.S4G093400.t1"; gene_id "Ledus.S4G093400"
Ledus.S4	AUGUSTUS	stop_codon	6734313	6734315	.	-	0	transcript_id "Ledus.S4G093400.t1"; gene_id "Ledus.S4G093400"
Ledus.S4	AUGUSTUS	CDS	6734316	6735632	0.9	-	0	transcript_id "Ledus.S4G093400.t1"; gene_id "Ledus.S4G093400"
Ledus.S4	AUGUSTUS	exon	6734316	6735632	.	-	.	transcript_id "Ledus.S4G093400.t1"; gene_id "Ledus.S4G093400"
Ledus.S4	AUGUSTUS	start_codon	6735630	6735632	.	-	0	transcript_id "Ledus.S4G093400.t1"; gene_id "Ledus.S4G093400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9668.t1 is derived from g10698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8948160	8949635	.	-	.	Ledus.S3G114500
Ledus.S3	AUGUSTUS	transcript	8948160	8949635	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	stop_codon	8948157	8948159	.	-	0	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	CDS	8948160	8948224	0.96	-	2	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	exon	8948160	8948224	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	intron	8948225	8948335	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	CDS	8948336	8948435	0.96	-	0	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	exon	8948336	8948435	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	intron	8948436	8948559	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	CDS	8948560	8948688	1	-	0	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	exon	8948560	8948688	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	intron	8948689	8948819	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	CDS	8948820	8948941	0.96	-	2	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	exon	8948820	8948941	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	intron	8948942	8949042	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	CDS	8949043	8949108	1	-	2	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	exon	8949043	8949108	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	intron	8949109	8949208	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	CDS	8949209	8949277	1	-	2	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	exon	8949209	8949277	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	intron	8949278	8949355	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	CDS	8949356	8949471	0.96	-	1	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	exon	8949356	8949471	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	intron	8949472	8949588	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	CDS	8949589	8949635	0.96	-	0	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	exon	8949589	8949635	.	-	.	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
Ledus.S3	AUGUSTUS	start_codon	8949633	8949635	.	-	0	transcript_id "Ledus.S3G114500.t1"; gene_id "Ledus.S3G114500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6501.t1 is derived from g3944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31662219	31662692	.	-	.	Ledus.S1G392200
Ledus.S1	AUGUSTUS	transcript	31662219	31662692	.	-	.	transcript_id "Ledus.S1G392200.t1"; gene_id "Ledus.S1G392200"
Ledus.S1	AUGUSTUS	stop_codon	31662216	31662218	.	-	0	transcript_id "Ledus.S1G392200.t1"; gene_id "Ledus.S1G392200"
Ledus.S1	AUGUSTUS	CDS	31662219	31662692	0.76	-	0	transcript_id "Ledus.S1G392200.t1"; gene_id "Ledus.S1G392200"
Ledus.S1	AUGUSTUS	exon	31662219	31662692	.	-	.	transcript_id "Ledus.S1G392200.t1"; gene_id "Ledus.S1G392200"
Ledus.S1	AUGUSTUS	start_codon	31662690	31662692	.	-	0	transcript_id "Ledus.S1G392200.t1"; gene_id "Ledus.S1G392200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3699.t1 is derived from g1135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10997716	11000317	.	-	.	Ledus.S1G112000
Ledus.S1	AUGUSTUS	transcript	10997716	11000317	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	stop_codon	10997713	10997715	.	-	0	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	CDS	10997716	10997730	1	-	0	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	exon	10997716	10997730	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	intron	10997731	10997810	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	CDS	10997811	10997882	1	-	0	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	exon	10997811	10997882	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	intron	10997883	10997961	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	CDS	10997962	10998021	1	-	0	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	exon	10997962	10998021	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	intron	10998022	10998158	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	CDS	10998159	10998225	1	-	1	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	exon	10998159	10998225	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	intron	10998226	10998309	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	CDS	10998310	10998509	1	-	0	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	exon	10998310	10998509	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	intron	10998510	10998741	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	CDS	10998742	10998808	1	-	1	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	exon	10998742	10998808	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	intron	10998809	10998892	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	CDS	10998893	10998987	1	-	0	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	exon	10998893	10998987	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	intron	10998988	10999119	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	CDS	10999120	10999193	1	-	2	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	exon	10999120	10999193	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	intron	10999194	10999352	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	CDS	10999353	10999444	1	-	1	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	exon	10999353	10999444	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	intron	10999445	10999593	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	CDS	10999594	10999626	0.99	-	1	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	exon	10999594	10999626	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	intron	10999627	10999745	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	CDS	10999746	11000049	0.94	-	2	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	exon	10999746	11000049	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	intron	11000050	11000142	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	CDS	11000143	11000317	0.96	-	0	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	exon	11000143	11000317	.	-	.	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
Ledus.S1	AUGUSTUS	start_codon	11000315	11000317	.	-	0	transcript_id "Ledus.S1G112000.t1"; gene_id "Ledus.S1G112000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4584.t1 is derived from g2021.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17907377	17919115	.	+	.	Ledus.S1G200500
Ledus.S1	AUGUSTUS	transcript	17907377	17919115	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	start_codon	17907377	17907379	.	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17907377	17907465	0.79	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17907377	17907465	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17907466	17907644	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17907645	17907707	0.46	+	1	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17907645	17907707	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17907708	17908135	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17908136	17908270	0.43	+	1	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17908136	17908270	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17908271	17908545	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17908546	17908930	0.99	+	1	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17908546	17908930	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17908931	17909035	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17909036	17909152	1	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17909036	17909152	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17909153	17909228	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17909229	17909311	1	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17909229	17909311	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17909312	17909481	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17909482	17909706	1	+	1	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17909482	17909706	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17909707	17909873	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17909874	17910022	1	+	1	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17909874	17910022	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17910023	17910108	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17910109	17910239	1	+	2	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17910109	17910239	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17910240	17910314	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17910315	17910437	1	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17910315	17910437	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17910438	17910591	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17910592	17910665	1	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17910592	17910665	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17910666	17910917	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17910918	17911511	0.97	+	1	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17910918	17911511	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17911512	17911765	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17911766	17911877	1	+	1	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17911766	17911877	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17911878	17912068	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17912069	17912203	1	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17912069	17912203	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17912204	17912331	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17912332	17912658	0.82	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17912332	17912658	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17912659	17912805	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17912806	17913103	0.86	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17912806	17913103	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17913104	17913183	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17913184	17914628	1	+	2	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17913184	17914628	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17914629	17914706	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17914707	17915148	0.89	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17914707	17915148	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17915149	17915413	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17915414	17916402	0.94	+	2	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17915414	17916402	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17916403	17916509	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17916510	17916575	1	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17916510	17916575	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17916576	17916735	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17916736	17916861	1	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17916736	17916861	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17916862	17917026	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17917027	17917277	0.99	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17917027	17917277	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17917278	17917446	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17917447	17918939	0.98	+	1	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17917447	17918939	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17918940	17919029	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17919030	17919115	0.81	+	2	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17919030	17919115	.	+	.	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	stop_codon	17919116	17919118	.	+	0	transcript_id "Ledus.S1G200500.t1"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	transcript	17907377	17919115	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	start_codon	17907377	17907379	.	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17907377	17907465	0.67	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17907377	17907465	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17907466	17907635	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17907636	17907707	0.32	+	1	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17907636	17907707	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17907708	17908135	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17908136	17908270	0.35	+	1	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17908136	17908270	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17908271	17908545	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17908546	17908930	1	+	1	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17908546	17908930	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17908931	17909035	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17909036	17909152	1	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17909036	17909152	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17909153	17909228	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17909229	17909311	1	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17909229	17909311	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17909312	17909481	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17909482	17909706	1	+	1	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17909482	17909706	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17909707	17909873	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17909874	17910022	1	+	1	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17909874	17910022	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17910023	17910108	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17910109	17910239	1	+	2	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17910109	17910239	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17910240	17910314	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17910315	17910437	1	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17910315	17910437	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17910438	17910591	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17910592	17910665	1	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17910592	17910665	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17910666	17910917	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17910918	17911511	0.96	+	1	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17910918	17911511	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17911512	17911765	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17911766	17911877	1	+	1	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17911766	17911877	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17911878	17912068	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17912069	17912203	1	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17912069	17912203	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17912204	17912331	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17912332	17912658	0.81	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17912332	17912658	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17912659	17912805	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17912806	17913103	0.91	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17912806	17913103	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17913104	17913183	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17913184	17914628	1	+	2	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17913184	17914628	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17914629	17914706	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17914707	17915148	0.94	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17914707	17915148	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17915149	17915413	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17915414	17916402	0.95	+	2	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17915414	17916402	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17916403	17916509	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17916510	17916575	1	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17916510	17916575	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17916576	17916735	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17916736	17916861	1	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17916736	17916861	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17916862	17917026	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17917027	17917277	0.98	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17917027	17917277	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17917278	17917446	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17917447	17918939	1	+	1	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17917447	17918939	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17918940	17919029	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17919030	17919115	0.77	+	2	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17919030	17919115	.	+	.	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	stop_codon	17919116	17919118	.	+	0	transcript_id "Ledus.S1G200500.t2"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	transcript	17907377	17912011	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	start_codon	17907377	17907379	.	+	0	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17907377	17907465	0.65	+	0	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17907377	17907465	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17907466	17907635	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17907636	17907707	0.37	+	1	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17907636	17907707	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17907708	17908135	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17908136	17908270	0.32	+	1	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17908136	17908270	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17908271	17908545	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17908546	17908930	1	+	1	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17908546	17908930	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17908931	17909035	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17909036	17909152	1	+	0	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17909036	17909152	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17909153	17909228	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17909229	17909311	1	+	0	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17909229	17909311	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17909312	17909481	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17909482	17909706	1	+	1	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17909482	17909706	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17909707	17909873	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17909874	17910022	1	+	1	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17909874	17910022	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17910023	17910108	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17910109	17910239	1	+	2	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17910109	17910239	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17910240	17910314	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17910315	17910437	1	+	0	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17910315	17910437	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17910438	17910591	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17910592	17910665	1	+	0	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17910592	17910665	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17910666	17910917	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17910918	17911511	0.99	+	1	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17910918	17911511	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17911512	17911765	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17911766	17911877	1	+	1	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17911766	17911877	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	intron	17911878	17911963	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	CDS	17911964	17912011	0.67	+	0	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	exon	17911964	17912011	.	+	.	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
Ledus.S1	AUGUSTUS	stop_codon	17912012	17912014	.	+	0	transcript_id "Ledus.S1G200500.t3"; gene_id "Ledus.S1G200500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg460.t1 is derived from g7321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2683959	2685365	.	-	.	Ledus.S2G034200
Ledus.S2	AUGUSTUS	transcript	2683959	2685062	.	-	.	transcript_id "Ledus.S2G034200.t1"; gene_id "Ledus.S2G034200"
Ledus.S2	AUGUSTUS	stop_codon	2683956	2683958	.	-	0	transcript_id "Ledus.S2G034200.t1"; gene_id "Ledus.S2G034200"
Ledus.S2	AUGUSTUS	CDS	2683959	2685062	0.95	-	0	transcript_id "Ledus.S2G034200.t1"; gene_id "Ledus.S2G034200"
Ledus.S2	AUGUSTUS	exon	2683959	2685062	.	-	.	transcript_id "Ledus.S2G034200.t1"; gene_id "Ledus.S2G034200"
Ledus.S2	AUGUSTUS	start_codon	2685060	2685062	.	-	0	transcript_id "Ledus.S2G034200.t1"; gene_id "Ledus.S2G034200"
Ledus.S2	AUGUSTUS	transcript	2683959	2685365	.	-	.	transcript_id "Ledus.S2G034200.t2"; gene_id "Ledus.S2G034200"
Ledus.S2	AUGUSTUS	stop_codon	2683956	2683958	.	-	0	transcript_id "Ledus.S2G034200.t2"; gene_id "Ledus.S2G034200"
Ledus.S2	AUGUSTUS	CDS	2683959	2685365	0.76	-	0	transcript_id "Ledus.S2G034200.t2"; gene_id "Ledus.S2G034200"
Ledus.S2	AUGUSTUS	exon	2683959	2685365	.	-	.	transcript_id "Ledus.S2G034200.t2"; gene_id "Ledus.S2G034200"
Ledus.S2	AUGUSTUS	start_codon	2685363	2685365	.	-	0	transcript_id "Ledus.S2G034200.t2"; gene_id "Ledus.S2G034200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7266.t1 is derived from g11937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	539336	553022	.	+	.	Ledus.S5G004400
Ledus.S5	AUGUSTUS	transcript	539336	553022	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	start_codon	539336	539338	.	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	539336	539495	0.51	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	539336	539495	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	539496	539931	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	539932	540037	0.84	+	2	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	539932	540037	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	540038	540246	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	540247	540370	1	+	1	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	540247	540370	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	540371	540686	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	540687	540766	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	540687	540766	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	540767	540963	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	540964	541141	1	+	1	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	540964	541141	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	541142	541266	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	541267	541331	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	541267	541331	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	541332	541418	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	541419	541501	1	+	1	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	541419	541501	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	541502	541597	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	541598	541683	1	+	2	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	541598	541683	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	541684	541842	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	541843	541956	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	541843	541956	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	541957	542135	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	542136	542255	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	542136	542255	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	542256	542401	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	542402	542504	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	542402	542504	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	542505	542593	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	542594	542730	1	+	2	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	542594	542730	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	542731	542855	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	542856	542921	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	542856	542921	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	542922	543075	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	543076	543193	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	543076	543193	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	543194	543278	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	543279	543325	1	+	2	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	543279	543325	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	543326	543407	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	543408	543485	0.98	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	543408	543485	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	543486	543586	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	543587	543685	0.98	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	543587	543685	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	543686	543898	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	543899	544004	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	543899	544004	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	544005	544178	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	544179	544291	1	+	2	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	544179	544291	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	544292	544431	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	544432	544516	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	544432	544516	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	544517	544596	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	544597	544697	0.97	+	2	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	544597	544697	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	544698	544801	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	544802	544909	0.98	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	544802	544909	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	544910	545163	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	545164	545269	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	545164	545269	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	545270	545355	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	545356	545435	1	+	2	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	545356	545435	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	545436	545553	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	545554	545703	0.9	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	545554	545703	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	545704	545808	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	545809	545884	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	545809	545884	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	545885	545982	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	545983	546107	1	+	2	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	545983	546107	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	546108	546209	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	546210	546320	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	546210	546320	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	546321	546395	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	546396	546545	0.99	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	546396	546545	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	546546	546629	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	546630	546704	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	546630	546704	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	546705	546824	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	546825	546903	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	546825	546903	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	546904	547053	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	547054	547184	1	+	2	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	547054	547184	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	547185	547457	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	547458	547544	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	547458	547544	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	547545	547682	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	547683	547757	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	547683	547757	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	547758	547845	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	547846	547941	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	547846	547941	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	547942	548075	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	548076	548177	0.93	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	548076	548177	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	548178	548286	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	548287	548388	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	548287	548388	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	548389	548487	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	548488	548670	0.9	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	548488	548670	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	548671	548765	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	548766	548877	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	548766	548877	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	548878	548987	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	548988	549064	1	+	2	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	548988	549064	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	549065	549144	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	549145	549224	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	549145	549224	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	549225	549544	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	549545	549610	1	+	1	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	549545	549610	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	549611	549715	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	549716	549863	0.99	+	1	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	549716	549863	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	549864	549983	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	549984	550106	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	549984	550106	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	550107	550248	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	550249	550326	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	550249	550326	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	550327	550423	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	550424	550582	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	550424	550582	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	550583	550680	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	550681	550836	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	550681	550836	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	550837	550927	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	550928	551025	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	550928	551025	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	551026	551112	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	551113	551269	1	+	1	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	551113	551269	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	551270	551378	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	551379	551498	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	551379	551498	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	551499	551943	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	551944	552039	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	551944	552039	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	552040	552122	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	552123	552194	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	552123	552194	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	552195	552275	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	552276	552576	1	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	552276	552576	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	intron	552577	552732	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	CDS	552733	553022	1	+	2	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	exon	552733	553022	.	+	.	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
Ledus.S5	AUGUSTUS	stop_codon	553023	553025	.	+	0	transcript_id "Ledus.S5G004400.t1"; gene_id "Ledus.S5G004400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10581.t1 is derived from g11611.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16249885	16250334	.	+	.	Ledus.S3G205800
Ledus.S3	AUGUSTUS	transcript	16249885	16250334	.	+	.	transcript_id "Ledus.S3G205800.t1"; gene_id "Ledus.S3G205800"
Ledus.S3	AUGUSTUS	start_codon	16249885	16249887	.	+	0	transcript_id "Ledus.S3G205800.t1"; gene_id "Ledus.S3G205800"
Ledus.S3	AUGUSTUS	CDS	16249885	16250334	0.69	+	0	transcript_id "Ledus.S3G205800.t1"; gene_id "Ledus.S3G205800"
Ledus.S3	AUGUSTUS	exon	16249885	16250334	.	+	.	transcript_id "Ledus.S3G205800.t1"; gene_id "Ledus.S3G205800"
Ledus.S3	AUGUSTUS	stop_codon	16250335	16250337	.	+	0	transcript_id "Ledus.S3G205800.t1"; gene_id "Ledus.S3G205800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10402.t1 is derived from g11432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14828434	14832637	.	-	.	Ledus.S3G187900
Ledus.S3	AUGUSTUS	transcript	14828434	14832637	.	-	.	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	stop_codon	14828431	14828433	.	-	0	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	CDS	14828434	14830798	0.9	-	1	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	exon	14828434	14830798	.	-	.	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	intron	14830799	14830897	.	-	.	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	CDS	14830898	14831160	1	-	0	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	exon	14830898	14831160	.	-	.	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	intron	14831161	14831249	.	-	.	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	CDS	14831250	14831372	1	-	0	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	exon	14831250	14831372	.	-	.	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	intron	14831373	14831465	.	-	.	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	CDS	14831466	14832095	1	-	0	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	exon	14831466	14832095	.	-	.	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	intron	14832096	14832379	.	-	.	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	CDS	14832380	14832480	0.8	-	2	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	exon	14832380	14832480	.	-	.	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	intron	14832481	14832579	.	-	.	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	CDS	14832580	14832637	0.46	-	0	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	exon	14832580	14832637	.	-	.	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
Ledus.S3	AUGUSTUS	start_codon	14832635	14832637	.	-	0	transcript_id "Ledus.S3G187900.t1"; gene_id "Ledus.S3G187900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1148.t1 is derived from g8009.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7939613	7940984	.	+	.	Ledus.S2G103000
Ledus.S2	AUGUSTUS	transcript	7939613	7940984	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	start_codon	7939613	7939615	.	+	0	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	CDS	7939613	7939861	0.98	+	0	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	exon	7939613	7939861	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	intron	7939862	7939940	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	CDS	7939941	7940057	1	+	0	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	exon	7939941	7940057	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	intron	7940058	7940198	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	CDS	7940199	7940294	0.98	+	0	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	exon	7940199	7940294	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	intron	7940295	7940401	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	CDS	7940402	7940494	0.67	+	0	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	exon	7940402	7940494	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	intron	7940495	7940615	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	CDS	7940616	7940651	0.98	+	0	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	exon	7940616	7940651	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	intron	7940652	7940741	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	CDS	7940742	7940864	0.85	+	0	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	exon	7940742	7940864	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	intron	7940865	7940966	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	CDS	7940967	7940984	0.85	+	0	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	exon	7940967	7940984	.	+	.	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
Ledus.S2	AUGUSTUS	stop_codon	7940985	7940987	.	+	0	transcript_id "Ledus.S2G103000.t1"; gene_id "Ledus.S2G103000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9154.t1 is derived from g10184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4900808	4904376	.	+	.	Ledus.S3G063100
Ledus.S3	AUGUSTUS	transcript	4900808	4904376	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	start_codon	4900808	4900810	.	+	0	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	CDS	4900808	4900930	0.46	+	0	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	exon	4900808	4900930	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	intron	4900931	4901026	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	CDS	4901027	4901047	0.44	+	0	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	exon	4901027	4901047	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	intron	4901048	4901293	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	CDS	4901294	4901394	0.43	+	0	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	exon	4901294	4901394	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	intron	4901395	4901557	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	CDS	4901558	4902758	0.3	+	1	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	exon	4901558	4902758	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	intron	4902759	4902992	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	CDS	4902993	4903104	0.32	+	0	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	exon	4902993	4903104	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	intron	4903105	4903343	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	CDS	4903344	4903705	0.63	+	2	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	exon	4903344	4903705	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	intron	4903706	4903821	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	CDS	4903822	4904144	0.79	+	0	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	exon	4903822	4904144	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	intron	4904145	4904249	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	CDS	4904250	4904376	0.89	+	1	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	exon	4904250	4904376	.	+	.	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
Ledus.S3	AUGUSTUS	stop_codon	4904377	4904379	.	+	0	transcript_id "Ledus.S3G063100.t1"; gene_id "Ledus.S3G063100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2514.t1 is derived from g9377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18533488	18538940	.	+	.	Ledus.S2G239600
Ledus.S2	AUGUSTUS	transcript	18533488	18538940	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	start_codon	18533488	18533490	.	+	0	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18533488	18533569	1	+	0	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18533488	18533569	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18533570	18533987	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18533988	18534038	1	+	2	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18533988	18534038	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18534039	18534240	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18534241	18534301	0.98	+	2	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18534241	18534301	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18534302	18534416	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18534417	18534494	0.99	+	1	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18534417	18534494	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18534495	18534634	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18534635	18534706	1	+	1	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18534635	18534706	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18534707	18534828	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18534829	18534910	1	+	1	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18534829	18534910	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18534911	18535018	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18535019	18535124	1	+	0	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18535019	18535124	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18535125	18535217	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18535218	18535294	1	+	2	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18535218	18535294	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18535295	18535436	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18535437	18535481	1	+	0	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18535437	18535481	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18535482	18535574	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18535575	18535661	1	+	0	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18535575	18535661	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18535662	18535973	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18535974	18536063	1	+	0	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18535974	18536063	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18536064	18536239	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18536240	18536319	1	+	0	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18536240	18536319	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18536320	18536490	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18536491	18536584	1	+	1	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18536491	18536584	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18536585	18536667	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18536668	18536756	0.93	+	0	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18536668	18536756	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18536757	18536878	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18536879	18536967	0.96	+	1	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18536879	18536967	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18536968	18537085	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18537086	18537215	1	+	2	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18537086	18537215	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18537216	18537425	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18537426	18537544	0.82	+	1	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18537426	18537544	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18537545	18537653	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18537654	18537777	0.95	+	2	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18537654	18537777	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18537778	18537877	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18537878	18537964	1	+	1	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18537878	18537964	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18537965	18538120	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18538121	18538224	1	+	1	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18538121	18538224	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18538225	18538324	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18538325	18538410	1	+	2	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18538325	18538410	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18538411	18538492	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18538493	18538582	1	+	0	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18538493	18538582	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18538583	18538661	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18538662	18538748	1	+	0	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18538662	18538748	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	intron	18538749	18538841	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	CDS	18538842	18538940	1	+	0	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	exon	18538842	18538940	.	+	.	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
Ledus.S2	AUGUSTUS	stop_codon	18538941	18538943	.	+	0	transcript_id "Ledus.S2G239600.t1"; gene_id "Ledus.S2G239600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10496.t1 is derived from g11526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15621069	15622972	.	-	.	Ledus.S3G197300
Ledus.S3	AUGUSTUS	transcript	15621069	15622972	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	stop_codon	15621066	15621068	.	-	0	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	CDS	15621069	15621125	0.7	-	0	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	exon	15621069	15621125	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	intron	15621126	15621240	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	CDS	15621241	15621285	0.7	-	0	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	exon	15621241	15621285	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	intron	15621286	15621367	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	CDS	15621368	15621430	1	-	0	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	exon	15621368	15621430	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	intron	15621431	15621547	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	CDS	15621548	15621590	0.99	-	1	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	exon	15621548	15621590	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	intron	15621591	15621686	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	CDS	15621687	15621799	1	-	0	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	exon	15621687	15621799	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	intron	15621800	15621990	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	CDS	15621991	15622068	0.48	-	0	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	exon	15621991	15622068	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	intron	15622069	15622154	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	CDS	15622155	15622199	0.77	-	0	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	exon	15622155	15622199	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	intron	15622200	15622485	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	CDS	15622486	15622564	1	-	1	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	exon	15622486	15622564	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	intron	15622565	15622722	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	CDS	15622723	15622812	1	-	1	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	exon	15622723	15622812	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	intron	15622813	15622883	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	CDS	15622884	15622972	1	-	0	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	exon	15622884	15622972	.	-	.	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
Ledus.S3	AUGUSTUS	start_codon	15622970	15622972	.	-	0	transcript_id "Ledus.S3G197300.t1"; gene_id "Ledus.S3G197300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4798.t1 is derived from g2236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19819302	19821735	.	-	.	Ledus.S1G221900
Ledus.S1	AUGUSTUS	transcript	19819302	19821735	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	stop_codon	19819299	19819301	.	-	0	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	CDS	19819302	19819319	1	-	0	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	exon	19819302	19819319	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	intron	19819320	19819565	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	CDS	19819566	19819722	0.66	-	1	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	exon	19819566	19819722	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	intron	19819723	19819893	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	CDS	19819894	19819976	0.66	-	0	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	exon	19819894	19819976	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	intron	19819977	19820071	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	CDS	19820072	19820317	1	-	0	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	exon	19820072	19820317	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	intron	19820318	19820422	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	CDS	19820423	19820707	0.99	-	0	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	exon	19820423	19820707	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	intron	19820708	19820801	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	CDS	19820802	19820950	1	-	2	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	exon	19820802	19820950	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	intron	19820951	19821033	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	CDS	19821034	19821292	1	-	0	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	exon	19821034	19821292	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	intron	19821293	19821435	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	CDS	19821436	19821735	0.5	-	0	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	exon	19821436	19821735	.	-	.	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
Ledus.S1	AUGUSTUS	start_codon	19821733	19821735	.	-	0	transcript_id "Ledus.S1G221900.t1"; gene_id "Ledus.S1G221900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4732.t1 is derived from g2170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19327097	19332591	.	+	.	Ledus.S1G215300
Ledus.S1	AUGUSTUS	transcript	19327097	19332591	.	+	.	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	start_codon	19327097	19327099	.	+	0	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	CDS	19327097	19327514	1	+	0	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	exon	19327097	19327514	.	+	.	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	intron	19327515	19327787	.	+	.	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	CDS	19327788	19328276	0.97	+	2	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	exon	19327788	19328276	.	+	.	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	intron	19328277	19328593	.	+	.	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	CDS	19328594	19330087	0.86	+	2	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	exon	19328594	19330087	.	+	.	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	intron	19330088	19330177	.	+	.	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	CDS	19330178	19330327	1	+	2	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	exon	19330178	19330327	.	+	.	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	intron	19330328	19330939	.	+	.	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	CDS	19330940	19332591	0.95	+	2	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	exon	19330940	19332591	.	+	.	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
Ledus.S1	AUGUSTUS	stop_codon	19332592	19332594	.	+	0	transcript_id "Ledus.S1G215300.t1"; gene_id "Ledus.S1G215300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10224.t1 is derived from g11254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13651103	13653106	.	-	.	Ledus.S3G170100
Ledus.S3	AUGUSTUS	transcript	13651103	13653106	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	stop_codon	13651100	13651102	.	-	0	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	CDS	13651103	13651376	0.98	-	1	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	exon	13651103	13651376	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	intron	13651377	13651534	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	CDS	13651535	13651605	1	-	0	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	exon	13651535	13651605	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	intron	13651606	13651687	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	CDS	13651688	13651789	0.92	-	0	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	exon	13651688	13651789	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	intron	13651790	13651899	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	CDS	13651900	13651968	0.99	-	0	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	exon	13651900	13651968	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	intron	13651969	13652056	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	CDS	13652057	13652203	1	-	0	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	exon	13652057	13652203	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	intron	13652204	13652303	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	CDS	13652304	13652366	1	-	0	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	exon	13652304	13652366	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	intron	13652367	13652452	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	CDS	13652453	13652496	1	-	2	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	exon	13652453	13652496	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	intron	13652497	13652614	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	CDS	13652615	13652688	1	-	1	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	exon	13652615	13652688	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	intron	13652689	13652816	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	CDS	13652817	13653106	0.55	-	0	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	exon	13652817	13653106	.	-	.	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
Ledus.S3	AUGUSTUS	start_codon	13653104	13653106	.	-	0	transcript_id "Ledus.S3G170100.t1"; gene_id "Ledus.S3G170100"
# This transcript jg11677.t2 is derived from g5296.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11678.t1 is derived from g5297.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5935836	5936645	.	-	.	Ledus.S4G083400
Ledus.S4	AUGUSTUS	transcript	5935836	5936645	.	-	.	transcript_id "Ledus.S4G083400.t1"; gene_id "Ledus.S4G083400"
Ledus.S4	AUGUSTUS	stop_codon	5935833	5935835	.	-	0	transcript_id "Ledus.S4G083400.t1"; gene_id "Ledus.S4G083400"
Ledus.S4	AUGUSTUS	CDS	5935836	5936014	0.95	-	2	transcript_id "Ledus.S4G083400.t1"; gene_id "Ledus.S4G083400"
Ledus.S4	AUGUSTUS	exon	5935836	5936014	.	-	.	transcript_id "Ledus.S4G083400.t1"; gene_id "Ledus.S4G083400"
Ledus.S4	AUGUSTUS	intron	5936015	5936144	.	-	.	transcript_id "Ledus.S4G083400.t1"; gene_id "Ledus.S4G083400"
Ledus.S4	AUGUSTUS	CDS	5936145	5936316	1	-	0	transcript_id "Ledus.S4G083400.t1"; gene_id "Ledus.S4G083400"
Ledus.S4	AUGUSTUS	exon	5936145	5936316	.	-	.	transcript_id "Ledus.S4G083400.t1"; gene_id "Ledus.S4G083400"
Ledus.S4	AUGUSTUS	intron	5936317	5936501	.	-	.	transcript_id "Ledus.S4G083400.t1"; gene_id "Ledus.S4G083400"
Ledus.S4	AUGUSTUS	CDS	5936502	5936645	0.93	-	0	transcript_id "Ledus.S4G083400.t1"; gene_id "Ledus.S4G083400"
Ledus.S4	AUGUSTUS	exon	5936502	5936645	.	-	.	transcript_id "Ledus.S4G083400.t1"; gene_id "Ledus.S4G083400"
Ledus.S4	AUGUSTUS	start_codon	5936643	5936645	.	-	0	transcript_id "Ledus.S4G083400.t1"; gene_id "Ledus.S4G083400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5946.t1 is derived from g3389.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27994799	28005398	.	-	.	Ledus.S1G336700
Ledus.S1	AUGUSTUS	transcript	27994799	28005398	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	stop_codon	27994796	27994798	.	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27994799	27994919	1	-	1	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27994799	27994919	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27994920	27995008	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27995009	27995091	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27995009	27995091	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27995092	27995179	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27995180	27995260	0.99	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27995180	27995260	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27995261	27995362	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27995363	27995419	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27995363	27995419	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27995420	27995497	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27995498	27995554	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27995498	27995554	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27995555	27995675	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27995676	27995775	0.94	-	1	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27995676	27995775	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27995776	27995882	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27995883	27995953	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27995883	27995953	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27995954	27996077	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27996078	27996221	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27996078	27996221	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27996222	27996399	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27996400	27996603	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27996400	27996603	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27996604	27996769	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27996770	27996925	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27996770	27996925	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27996926	27997051	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27997052	27997222	0.95	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27997052	27997222	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27997223	27997334	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27997335	27997418	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27997335	27997418	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27997419	27997500	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27997501	27997551	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27997501	27997551	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27997552	27997799	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27997800	27997914	1	-	1	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27997800	27997914	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27997915	27998083	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27998084	27998223	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27998084	27998223	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27998224	27998364	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27998365	27998577	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27998365	27998577	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27998578	27998896	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27998897	27998995	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27998897	27998995	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27998996	27999158	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27999159	27999278	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27999159	27999278	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27999279	27999364	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27999365	27999570	1	-	2	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27999365	27999570	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27999571	27999687	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27999688	27999865	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27999688	27999865	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	27999866	27999985	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	27999986	28000046	1	-	1	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	27999986	28000046	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28000047	28000174	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28000175	28000284	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28000175	28000284	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28000285	28000440	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28000441	28000572	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28000441	28000572	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28000573	28000760	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28000761	28000931	0.99	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28000761	28000931	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28000932	28001043	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28001044	28001170	0.97	-	1	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28001044	28001170	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28001171	28001484	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28001485	28001522	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28001485	28001522	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28001523	28001766	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28001767	28001868	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28001767	28001868	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28001869	28001945	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28001946	28002003	1	-	1	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28001946	28002003	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28002004	28002095	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28002096	28002197	1	-	1	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28002096	28002197	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28002198	28002374	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28002375	28002521	1	-	1	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28002375	28002521	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28002522	28002617	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28002618	28002754	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28002618	28002754	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28002755	28002871	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28002872	28003021	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28002872	28003021	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28003022	28003172	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28003173	28003329	1	-	1	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28003173	28003329	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28003330	28003473	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28003474	28003532	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28003474	28003532	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28003533	28003710	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28003711	28003867	1	-	1	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28003711	28003867	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28003868	28003950	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28003951	28004096	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28003951	28004096	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28004097	28004251	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28004252	28004395	1	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28004252	28004395	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28004396	28004567	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28004568	28004642	0.38	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28004568	28004642	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28004643	28004718	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28004719	28005167	0.47	-	2	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28004719	28005167	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	intron	28005168	28005313	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	CDS	28005314	28005398	0.42	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	exon	28005314	28005398	.	-	.	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
Ledus.S1	AUGUSTUS	start_codon	28005396	28005398	.	-	0	transcript_id "Ledus.S1G336700.t1"; gene_id "Ledus.S1G336700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8744.t1 is derived from g9774.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1750704	1752383	.	+	.	Ledus.S3G022100
Ledus.S3	AUGUSTUS	transcript	1750704	1752383	.	+	.	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	start_codon	1750704	1750706	.	+	0	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	CDS	1750704	1751460	0.85	+	0	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	exon	1750704	1751460	.	+	.	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	intron	1751461	1751561	.	+	.	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	CDS	1751562	1751683	0.99	+	2	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	exon	1751562	1751683	.	+	.	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	intron	1751684	1751818	.	+	.	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	CDS	1751819	1751859	1	+	0	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	exon	1751819	1751859	.	+	.	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	intron	1751860	1752001	.	+	.	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	CDS	1752002	1752100	1	+	1	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	exon	1752002	1752100	.	+	.	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	intron	1752101	1752205	.	+	.	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	CDS	1752206	1752383	0.99	+	1	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	exon	1752206	1752383	.	+	.	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
Ledus.S3	AUGUSTUS	stop_codon	1752384	1752386	.	+	0	transcript_id "Ledus.S3G022100.t1"; gene_id "Ledus.S3G022100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5536.t1 is derived from g2975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25029155	25030246	.	-	.	Ledus.S1G295700
Ledus.S1	AUGUSTUS	transcript	25029155	25030246	.	-	.	transcript_id "Ledus.S1G295700.t1"; gene_id "Ledus.S1G295700"
Ledus.S1	AUGUSTUS	stop_codon	25029152	25029154	.	-	0	transcript_id "Ledus.S1G295700.t1"; gene_id "Ledus.S1G295700"
Ledus.S1	AUGUSTUS	CDS	25029155	25030246	0.78	-	0	transcript_id "Ledus.S1G295700.t1"; gene_id "Ledus.S1G295700"
Ledus.S1	AUGUSTUS	exon	25029155	25030246	.	-	.	transcript_id "Ledus.S1G295700.t1"; gene_id "Ledus.S1G295700"
Ledus.S1	AUGUSTUS	start_codon	25030244	25030246	.	-	0	transcript_id "Ledus.S1G295700.t1"; gene_id "Ledus.S1G295700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8512.t1 is derived from g13184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12402723	12403787	.	+	.	Ledus.S5G129000
Ledus.S5	AUGUSTUS	transcript	12402723	12403787	.	+	.	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	start_codon	12402723	12402725	.	+	0	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	CDS	12402723	12402896	0.6	+	0	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	exon	12402723	12402896	.	+	.	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	intron	12402897	12403049	.	+	.	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	CDS	12403050	12403113	1	+	0	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	exon	12403050	12403113	.	+	.	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	intron	12403114	12403243	.	+	.	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	CDS	12403244	12403328	1	+	2	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	exon	12403244	12403328	.	+	.	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	intron	12403329	12403428	.	+	.	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	CDS	12403429	12403552	1	+	1	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	exon	12403429	12403552	.	+	.	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	intron	12403553	12403679	.	+	.	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	CDS	12403680	12403787	0.98	+	0	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	exon	12403680	12403787	.	+	.	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
Ledus.S5	AUGUSTUS	stop_codon	12403788	12403790	.	+	0	transcript_id "Ledus.S5G129000.t1"; gene_id "Ledus.S5G129000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9008.t1 is derived from g10038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3849604	3850785	.	-	.	Ledus.S3G048500
Ledus.S3	AUGUSTUS	transcript	3849604	3850785	.	-	.	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	stop_codon	3849601	3849603	.	-	0	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	CDS	3849604	3849702	1	-	0	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	exon	3849604	3849702	.	-	.	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	intron	3849703	3849889	.	-	.	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	CDS	3849890	3849976	1	-	0	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	exon	3849890	3849976	.	-	.	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	intron	3849977	3850074	.	-	.	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	CDS	3850075	3850139	1	-	2	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	exon	3850075	3850139	.	-	.	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	intron	3850140	3850361	.	-	.	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	CDS	3850362	3850443	1	-	0	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	exon	3850362	3850443	.	-	.	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	intron	3850444	3850629	.	-	.	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	CDS	3850630	3850785	1	-	0	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	exon	3850630	3850785	.	-	.	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
Ledus.S3	AUGUSTUS	start_codon	3850783	3850785	.	-	0	transcript_id "Ledus.S3G048500.t1"; gene_id "Ledus.S3G048500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10411.t1 is derived from g11441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15020324	15026935	.	-	.	Ledus.S3G188800
Ledus.S3	AUGUSTUS	transcript	15020324	15026935	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	stop_codon	15020321	15020323	.	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15020324	15021048	1	-	2	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15020324	15021048	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15021049	15021131	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15021132	15021222	1	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15021132	15021222	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15021223	15021312	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15021313	15021374	1	-	2	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15021313	15021374	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15021375	15021474	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15021475	15021619	0.96	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15021475	15021619	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15021620	15021728	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15021729	15022148	0.92	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15021729	15022148	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15022149	15022255	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15022256	15022340	0.75	-	1	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15022256	15022340	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15022341	15022433	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15022434	15022600	0.74	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15022434	15022600	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15022601	15022688	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15022689	15022896	0.85	-	1	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15022689	15022896	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15022897	15023011	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15023012	15023164	0.85	-	1	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15023012	15023164	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15023165	15023241	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15023242	15023375	0.99	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15023242	15023375	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15023376	15023480	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15023481	15023609	0.99	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15023481	15023609	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15023610	15023705	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15023706	15023891	1	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15023706	15023891	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15023892	15023976	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15023977	15024141	1	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15023977	15024141	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15024142	15024232	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15024233	15024343	1	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15024233	15024343	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15024344	15024444	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15024445	15024558	0.87	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15024445	15024558	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15024559	15024651	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15024652	15024861	1	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15024652	15024861	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15024862	15024959	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15024960	15025159	1	-	2	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15024960	15025159	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15025160	15025232	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15025233	15025503	0.99	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15025233	15025503	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15025504	15025580	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15025581	15025647	1	-	1	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15025581	15025647	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15025648	15025740	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15025741	15026027	1	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15025741	15026027	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15026028	15026168	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15026169	15026801	1	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15026169	15026801	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	intron	15026802	15026884	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	CDS	15026885	15026935	1	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	exon	15026885	15026935	.	-	.	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
Ledus.S3	AUGUSTUS	start_codon	15026933	15026935	.	-	0	transcript_id "Ledus.S3G188800.t1"; gene_id "Ledus.S3G188800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9927.t1 is derived from g10957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11246348	11252532	.	+	.	Ledus.S3G140400
Ledus.S3	AUGUSTUS	transcript	11246348	11252532	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	start_codon	11246348	11246350	.	+	0	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	CDS	11246348	11246412	0.9	+	0	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	exon	11246348	11246412	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	intron	11246413	11246560	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	CDS	11246561	11246657	0.75	+	1	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	exon	11246561	11246657	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	intron	11246658	11246739	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	CDS	11246740	11247084	1	+	0	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	exon	11246740	11247084	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	intron	11247085	11247261	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	CDS	11247262	11247328	1	+	0	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	exon	11247262	11247328	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	intron	11247329	11247421	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	CDS	11247422	11247507	1	+	2	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	exon	11247422	11247507	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	intron	11247508	11247662	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	CDS	11247663	11247722	1	+	0	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	exon	11247663	11247722	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	intron	11247723	11247952	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	CDS	11247953	11249103	1	+	0	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	exon	11247953	11249103	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	intron	11249104	11249312	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	CDS	11249313	11250643	0.43	+	1	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	exon	11249313	11250643	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	intron	11250644	11250785	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	CDS	11250786	11250984	0.47	+	2	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	exon	11250786	11250984	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	intron	11250985	11252450	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	CDS	11252451	11252532	0.92	+	1	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	exon	11252451	11252532	.	+	.	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
Ledus.S3	AUGUSTUS	stop_codon	11252533	11252535	.	+	0	transcript_id "Ledus.S3G140400.t1"; gene_id "Ledus.S3G140400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11902.t1 is derived from g5521.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7615386	7615628	.	-	.	Ledus.S4G105800
Ledus.S4	AUGUSTUS	transcript	7615386	7615628	.	-	.	transcript_id "Ledus.S4G105800.t1"; gene_id "Ledus.S4G105800"
Ledus.S4	AUGUSTUS	stop_codon	7615383	7615385	.	-	0	transcript_id "Ledus.S4G105800.t1"; gene_id "Ledus.S4G105800"
Ledus.S4	AUGUSTUS	CDS	7615386	7615628	0.79	-	0	transcript_id "Ledus.S4G105800.t1"; gene_id "Ledus.S4G105800"
Ledus.S4	AUGUSTUS	exon	7615386	7615628	.	-	.	transcript_id "Ledus.S4G105800.t1"; gene_id "Ledus.S4G105800"
Ledus.S4	AUGUSTUS	start_codon	7615626	7615628	.	-	0	transcript_id "Ledus.S4G105800.t1"; gene_id "Ledus.S4G105800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7967.t1 is derived from g12638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8278322	8280317	.	-	.	Ledus.S5G074500
Ledus.S5	AUGUSTUS	transcript	8278322	8280317	.	-	.	transcript_id "Ledus.S5G074500.t1"; gene_id "Ledus.S5G074500"
Ledus.S5	AUGUSTUS	stop_codon	8278319	8278321	.	-	0	transcript_id "Ledus.S5G074500.t1"; gene_id "Ledus.S5G074500"
Ledus.S5	AUGUSTUS	CDS	8278322	8279545	0.79	-	0	transcript_id "Ledus.S5G074500.t1"; gene_id "Ledus.S5G074500"
Ledus.S5	AUGUSTUS	exon	8278322	8279545	.	-	.	transcript_id "Ledus.S5G074500.t1"; gene_id "Ledus.S5G074500"
Ledus.S5	AUGUSTUS	intron	8279546	8279686	.	-	.	transcript_id "Ledus.S5G074500.t1"; gene_id "Ledus.S5G074500"
Ledus.S5	AUGUSTUS	CDS	8279687	8279829	0.81	-	2	transcript_id "Ledus.S5G074500.t1"; gene_id "Ledus.S5G074500"
Ledus.S5	AUGUSTUS	exon	8279687	8279829	.	-	.	transcript_id "Ledus.S5G074500.t1"; gene_id "Ledus.S5G074500"
Ledus.S5	AUGUSTUS	intron	8279830	8280115	.	-	.	transcript_id "Ledus.S5G074500.t1"; gene_id "Ledus.S5G074500"
Ledus.S5	AUGUSTUS	CDS	8280116	8280317	1	-	0	transcript_id "Ledus.S5G074500.t1"; gene_id "Ledus.S5G074500"
Ledus.S5	AUGUSTUS	exon	8280116	8280317	.	-	.	transcript_id "Ledus.S5G074500.t1"; gene_id "Ledus.S5G074500"
Ledus.S5	AUGUSTUS	start_codon	8280315	8280317	.	-	0	transcript_id "Ledus.S5G074500.t1"; gene_id "Ledus.S5G074500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11717.t1 is derived from g5336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6205458	6206954	.	-	.	Ledus.S4G087300
Ledus.S4	AUGUSTUS	transcript	6205458	6206954	.	-	.	transcript_id "Ledus.S4G087300.t1"; gene_id "Ledus.S4G087300"
Ledus.S4	AUGUSTUS	stop_codon	6205455	6205457	.	-	0	transcript_id "Ledus.S4G087300.t1"; gene_id "Ledus.S4G087300"
Ledus.S4	AUGUSTUS	CDS	6205458	6206333	1	-	0	transcript_id "Ledus.S4G087300.t1"; gene_id "Ledus.S4G087300"
Ledus.S4	AUGUSTUS	exon	6205458	6206333	.	-	.	transcript_id "Ledus.S4G087300.t1"; gene_id "Ledus.S4G087300"
Ledus.S4	AUGUSTUS	intron	6206334	6206411	.	-	.	transcript_id "Ledus.S4G087300.t1"; gene_id "Ledus.S4G087300"
Ledus.S4	AUGUSTUS	CDS	6206412	6206954	0.99	-	0	transcript_id "Ledus.S4G087300.t1"; gene_id "Ledus.S4G087300"
Ledus.S4	AUGUSTUS	exon	6206412	6206954	.	-	.	transcript_id "Ledus.S4G087300.t1"; gene_id "Ledus.S4G087300"
Ledus.S4	AUGUSTUS	start_codon	6206952	6206954	.	-	0	transcript_id "Ledus.S4G087300.t1"; gene_id "Ledus.S4G087300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11492.t1 is derived from g5110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4911515	4915212	.	-	.	Ledus.S4G064800
Ledus.S4	AUGUSTUS	transcript	4911515	4915212	.	-	.	transcript_id "Ledus.S4G064800.t1"; gene_id "Ledus.S4G064800"
Ledus.S4	AUGUSTUS	stop_codon	4911512	4911514	.	-	0	transcript_id "Ledus.S4G064800.t1"; gene_id "Ledus.S4G064800"
Ledus.S4	AUGUSTUS	CDS	4911515	4911533	0.82	-	1	transcript_id "Ledus.S4G064800.t1"; gene_id "Ledus.S4G064800"
Ledus.S4	AUGUSTUS	exon	4911515	4911533	.	-	.	transcript_id "Ledus.S4G064800.t1"; gene_id "Ledus.S4G064800"
Ledus.S4	AUGUSTUS	intron	4911534	4912023	.	-	.	transcript_id "Ledus.S4G064800.t1"; gene_id "Ledus.S4G064800"
Ledus.S4	AUGUSTUS	CDS	4912024	4912096	0.82	-	2	transcript_id "Ledus.S4G064800.t1"; gene_id "Ledus.S4G064800"
Ledus.S4	AUGUSTUS	exon	4912024	4912096	.	-	.	transcript_id "Ledus.S4G064800.t1"; gene_id "Ledus.S4G064800"
Ledus.S4	AUGUSTUS	intron	4912097	4912322	.	-	.	transcript_id "Ledus.S4G064800.t1"; gene_id "Ledus.S4G064800"
Ledus.S4	AUGUSTUS	CDS	4912323	4915212	0.76	-	0	transcript_id "Ledus.S4G064800.t1"; gene_id "Ledus.S4G064800"
Ledus.S4	AUGUSTUS	exon	4912323	4915212	.	-	.	transcript_id "Ledus.S4G064800.t1"; gene_id "Ledus.S4G064800"
Ledus.S4	AUGUSTUS	start_codon	4915210	4915212	.	-	0	transcript_id "Ledus.S4G064800.t1"; gene_id "Ledus.S4G064800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7258.t1 is derived from g11929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	515091	516529	.	+	.	Ledus.S5G003600
Ledus.S5	AUGUSTUS	transcript	515091	516529	.	+	.	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	start_codon	515091	515093	.	+	0	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	CDS	515091	515303	0.98	+	0	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	exon	515091	515303	.	+	.	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	intron	515304	515432	.	+	.	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	CDS	515433	515528	1	+	0	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	exon	515433	515528	.	+	.	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	intron	515529	515710	.	+	.	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	CDS	515711	515815	1	+	0	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	exon	515711	515815	.	+	.	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	intron	515816	515918	.	+	.	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	CDS	515919	515996	1	+	0	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	exon	515919	515996	.	+	.	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	intron	515997	516136	.	+	.	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	CDS	516137	516256	1	+	0	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	exon	516137	516256	.	+	.	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	intron	516257	516400	.	+	.	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	CDS	516401	516529	1	+	0	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	exon	516401	516529	.	+	.	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
Ledus.S5	AUGUSTUS	stop_codon	516530	516532	.	+	0	transcript_id "Ledus.S5G003600.t1"; gene_id "Ledus.S5G003600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7833.t1 is derived from g12504.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7367151	7368362	.	-	.	Ledus.S5G061100
Ledus.S5	AUGUSTUS	transcript	7367151	7368362	.	-	.	transcript_id "Ledus.S5G061100.t1"; gene_id "Ledus.S5G061100"
Ledus.S5	AUGUSTUS	stop_codon	7367148	7367150	.	-	0	transcript_id "Ledus.S5G061100.t1"; gene_id "Ledus.S5G061100"
Ledus.S5	AUGUSTUS	CDS	7367151	7368362	0.98	-	0	transcript_id "Ledus.S5G061100.t1"; gene_id "Ledus.S5G061100"
Ledus.S5	AUGUSTUS	exon	7367151	7368362	.	-	.	transcript_id "Ledus.S5G061100.t1"; gene_id "Ledus.S5G061100"
Ledus.S5	AUGUSTUS	start_codon	7368360	7368362	.	-	0	transcript_id "Ledus.S5G061100.t1"; gene_id "Ledus.S5G061100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8519.t1 is derived from g13191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12419057	12423937	.	-	.	Ledus.S5G129700
Ledus.S5	AUGUSTUS	transcript	12419057	12423937	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	stop_codon	12419054	12419056	.	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12419057	12419224	0.61	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12419057	12419224	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12419225	12419316	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12419317	12419452	1	-	1	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12419317	12419452	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12419453	12419542	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12419543	12419607	1	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12419543	12419607	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12419608	12419845	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12419846	12419938	1	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12419846	12419938	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12419939	12420053	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12420054	12420119	0.98	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12420054	12420119	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12420120	12420207	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12420208	12420288	1	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12420208	12420288	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12420289	12420383	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12420384	12420439	1	-	2	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12420384	12420439	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12420440	12420536	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12420537	12420625	1	-	1	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12420537	12420625	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12420626	12420745	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12420746	12420831	1	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12420746	12420831	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12420832	12421097	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12421098	12421214	1	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12421098	12421214	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12421215	12421349	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12421350	12421495	1	-	2	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12421350	12421495	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12421496	12421768	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12421769	12421829	1	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12421769	12421829	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12421830	12421939	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12421940	12422023	1	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12421940	12422023	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12422024	12422157	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12422158	12422265	1	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12422158	12422265	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12422266	12422466	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12422467	12422569	1	-	1	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12422467	12422569	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12422570	12422651	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12422652	12422695	1	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12422652	12422695	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12422696	12422802	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12422803	12422864	1	-	2	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12422803	12422864	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12422865	12423001	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12423002	12423170	1	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12423002	12423170	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12423171	12423293	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12423294	12423527	1	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12423294	12423527	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	intron	12423528	12423766	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	CDS	12423767	12423937	0.31	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	exon	12423767	12423937	.	-	.	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
Ledus.S5	AUGUSTUS	start_codon	12423935	12423937	.	-	0	transcript_id "Ledus.S5G129700.t1"; gene_id "Ledus.S5G129700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9874.t1 is derived from g10904.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10790029	10790891	.	+	.	Ledus.S3G135100
Ledus.S3	AUGUSTUS	transcript	10790029	10790891	.	+	.	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	start_codon	10790029	10790031	.	+	0	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	CDS	10790029	10790145	0.96	+	0	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	exon	10790029	10790145	.	+	.	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	intron	10790146	10790242	.	+	.	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	CDS	10790243	10790301	1	+	0	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	exon	10790243	10790301	.	+	.	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	intron	10790302	10790405	.	+	.	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	CDS	10790406	10790581	1	+	1	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	exon	10790406	10790581	.	+	.	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	intron	10790582	10790790	.	+	.	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	CDS	10790791	10790891	1	+	2	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	exon	10790791	10790891	.	+	.	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
Ledus.S3	AUGUSTUS	stop_codon	10790892	10790894	.	+	0	transcript_id "Ledus.S3G135100.t1"; gene_id "Ledus.S3G135100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7023.t1 is derived from g6554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	871007	871222	.	+	.	Ledus.C7G008400
Ledus.C7	AUGUSTUS	transcript	871007	871222	.	+	.	transcript_id "Ledus.C7G008400.t1"; gene_id "Ledus.C7G008400"
Ledus.C7	AUGUSTUS	start_codon	871007	871009	.	+	0	transcript_id "Ledus.C7G008400.t1"; gene_id "Ledus.C7G008400"
Ledus.C7	AUGUSTUS	CDS	871007	871222	0.61	+	0	transcript_id "Ledus.C7G008400.t1"; gene_id "Ledus.C7G008400"
Ledus.C7	AUGUSTUS	exon	871007	871222	.	+	.	transcript_id "Ledus.C7G008400.t1"; gene_id "Ledus.C7G008400"
Ledus.C7	AUGUSTUS	stop_codon	871223	871225	.	+	0	transcript_id "Ledus.C7G008400.t1"; gene_id "Ledus.C7G008400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4664.t1 is derived from g2102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18828970	18831589	.	+	.	Ledus.S1G208500
Ledus.S1	AUGUSTUS	transcript	18828970	18831589	.	+	.	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	start_codon	18828970	18828972	.	+	0	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	CDS	18828970	18829332	0.54	+	0	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	exon	18828970	18829332	.	+	.	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	intron	18829333	18829490	.	+	.	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	CDS	18829491	18830046	0.99	+	0	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	exon	18829491	18830046	.	+	.	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	intron	18830047	18830153	.	+	.	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	CDS	18830154	18831090	1	+	2	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	exon	18830154	18831090	.	+	.	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	intron	18831091	18831219	.	+	.	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	CDS	18831220	18831589	0.68	+	1	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	exon	18831220	18831589	.	+	.	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
Ledus.S1	AUGUSTUS	stop_codon	18831590	18831592	.	+	0	transcript_id "Ledus.S1G208500.t1"; gene_id "Ledus.S1G208500"
# This transcript jg11244.t2 is derived from g4862.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11245.t1 is derived from g4863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2888269	2889310	.	-	.	Ledus.S4G040100
Ledus.S4	AUGUSTUS	transcript	2888269	2889310	.	-	.	transcript_id "Ledus.S4G040100.t1"; gene_id "Ledus.S4G040100"
Ledus.S4	AUGUSTUS	stop_codon	2888266	2888268	.	-	0	transcript_id "Ledus.S4G040100.t1"; gene_id "Ledus.S4G040100"
Ledus.S4	AUGUSTUS	CDS	2888269	2888748	0.64	-	0	transcript_id "Ledus.S4G040100.t1"; gene_id "Ledus.S4G040100"
Ledus.S4	AUGUSTUS	exon	2888269	2888748	.	-	.	transcript_id "Ledus.S4G040100.t1"; gene_id "Ledus.S4G040100"
Ledus.S4	AUGUSTUS	intron	2888749	2889145	.	-	.	transcript_id "Ledus.S4G040100.t1"; gene_id "Ledus.S4G040100"
Ledus.S4	AUGUSTUS	CDS	2889146	2889310	1	-	0	transcript_id "Ledus.S4G040100.t1"; gene_id "Ledus.S4G040100"
Ledus.S4	AUGUSTUS	exon	2889146	2889310	.	-	.	transcript_id "Ledus.S4G040100.t1"; gene_id "Ledus.S4G040100"
Ledus.S4	AUGUSTUS	start_codon	2889308	2889310	.	-	0	transcript_id "Ledus.S4G040100.t1"; gene_id "Ledus.S4G040100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8067.t1 is derived from g12738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9030577	9031044	.	-	.	Ledus.S5G084500
Ledus.S5	AUGUSTUS	transcript	9030577	9031044	.	-	.	transcript_id "Ledus.S5G084500.t1"; gene_id "Ledus.S5G084500"
Ledus.S5	AUGUSTUS	stop_codon	9030574	9030576	.	-	0	transcript_id "Ledus.S5G084500.t1"; gene_id "Ledus.S5G084500"
Ledus.S5	AUGUSTUS	CDS	9030577	9030710	0.85	-	2	transcript_id "Ledus.S5G084500.t1"; gene_id "Ledus.S5G084500"
Ledus.S5	AUGUSTUS	exon	9030577	9030710	.	-	.	transcript_id "Ledus.S5G084500.t1"; gene_id "Ledus.S5G084500"
Ledus.S5	AUGUSTUS	intron	9030711	9030840	.	-	.	transcript_id "Ledus.S5G084500.t1"; gene_id "Ledus.S5G084500"
Ledus.S5	AUGUSTUS	CDS	9030841	9030906	0.95	-	2	transcript_id "Ledus.S5G084500.t1"; gene_id "Ledus.S5G084500"
Ledus.S5	AUGUSTUS	exon	9030841	9030906	.	-	.	transcript_id "Ledus.S5G084500.t1"; gene_id "Ledus.S5G084500"
Ledus.S5	AUGUSTUS	intron	9030907	9030986	.	-	.	transcript_id "Ledus.S5G084500.t1"; gene_id "Ledus.S5G084500"
Ledus.S5	AUGUSTUS	CDS	9030987	9031044	1	-	0	transcript_id "Ledus.S5G084500.t1"; gene_id "Ledus.S5G084500"
Ledus.S5	AUGUSTUS	exon	9030987	9031044	.	-	.	transcript_id "Ledus.S5G084500.t1"; gene_id "Ledus.S5G084500"
Ledus.S5	AUGUSTUS	start_codon	9031042	9031044	.	-	0	transcript_id "Ledus.S5G084500.t1"; gene_id "Ledus.S5G084500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10660.t1 is derived from g11690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16920546	16921556	.	+	.	Ledus.S3G213700
Ledus.S3	AUGUSTUS	transcript	16920546	16921556	.	+	.	transcript_id "Ledus.S3G213700.t1"; gene_id "Ledus.S3G213700"
Ledus.S3	AUGUSTUS	start_codon	16920546	16920548	.	+	0	transcript_id "Ledus.S3G213700.t1"; gene_id "Ledus.S3G213700"
Ledus.S3	AUGUSTUS	CDS	16920546	16921336	1	+	0	transcript_id "Ledus.S3G213700.t1"; gene_id "Ledus.S3G213700"
Ledus.S3	AUGUSTUS	exon	16920546	16921336	.	+	.	transcript_id "Ledus.S3G213700.t1"; gene_id "Ledus.S3G213700"
Ledus.S3	AUGUSTUS	intron	16921337	16921489	.	+	.	transcript_id "Ledus.S3G213700.t1"; gene_id "Ledus.S3G213700"
Ledus.S3	AUGUSTUS	CDS	16921490	16921556	0.93	+	1	transcript_id "Ledus.S3G213700.t1"; gene_id "Ledus.S3G213700"
Ledus.S3	AUGUSTUS	exon	16921490	16921556	.	+	.	transcript_id "Ledus.S3G213700.t1"; gene_id "Ledus.S3G213700"
Ledus.S3	AUGUSTUS	stop_codon	16921557	16921559	.	+	0	transcript_id "Ledus.S3G213700.t1"; gene_id "Ledus.S3G213700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6730.t1 is derived from g4173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33577642	33579243	.	-	.	Ledus.S1G415100
Ledus.S1	AUGUSTUS	transcript	33577642	33579243	.	-	.	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	stop_codon	33577639	33577641	.	-	0	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	CDS	33577642	33577649	0.31	-	2	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	exon	33577642	33577649	.	-	.	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	intron	33577650	33577812	.	-	.	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	CDS	33577813	33577844	0.25	-	1	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	exon	33577813	33577844	.	-	.	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	intron	33577845	33578051	.	-	.	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	CDS	33578052	33578821	0.39	-	0	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	exon	33578052	33578821	.	-	.	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	intron	33578822	33578925	.	-	.	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	CDS	33578926	33579243	1	-	0	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	exon	33578926	33579243	.	-	.	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
Ledus.S1	AUGUSTUS	start_codon	33579241	33579243	.	-	0	transcript_id "Ledus.S1G415100.t1"; gene_id "Ledus.S1G415100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8603.t1 is derived from g9633.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	527582	530955	.	-	.	Ledus.S3G008000
Ledus.S3	AUGUSTUS	transcript	527582	530955	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	stop_codon	527579	527581	.	-	0	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	527582	528472	0.89	-	0	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	527582	528472	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	528473	528603	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	528604	528751	0.54	-	1	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	528604	528751	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	528752	528833	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	528834	529041	0.64	-	2	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	528834	529041	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	529042	529129	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	529130	529222	1	-	2	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	529130	529222	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	529223	529319	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	529320	529401	1	-	0	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	529320	529401	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	529402	529639	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	529640	529681	1	-	0	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	529640	529681	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	529682	529765	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	529766	529918	1	-	0	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	529766	529918	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	529919	530059	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	530060	530191	1	-	0	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	530060	530191	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	530192	530272	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	530273	530365	1	-	0	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	530273	530365	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	530366	530460	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	530461	530601	1	-	0	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	530461	530601	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	530602	530736	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	530737	530955	0.94	-	0	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	530737	530955	.	-	.	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	start_codon	530953	530955	.	-	0	transcript_id "Ledus.S3G008000.t1"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	transcript	527582	530955	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	stop_codon	527579	527581	.	-	0	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	527582	528472	0.91	-	0	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	527582	528472	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	528473	528603	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	528604	528751	0.56	-	1	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	528604	528751	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	528752	528833	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	528834	529041	0.6	-	2	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	528834	529041	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	529042	529129	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	529130	529222	1	-	2	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	529130	529222	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	529223	529319	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	529320	529401	1	-	0	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	529320	529401	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	529402	529639	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	529640	529681	1	-	0	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	529640	529681	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	529682	529765	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	529766	529918	1	-	0	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	529766	529918	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	529919	530059	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	530060	530191	1	-	0	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	530060	530191	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	530192	530272	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	530273	530365	1	-	0	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	530273	530365	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	530366	530460	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	530461	530553	0.7	-	0	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	530461	530553	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	intron	530554	530736	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	CDS	530737	530955	0.91	-	0	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	exon	530737	530955	.	-	.	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
Ledus.S3	AUGUSTUS	start_codon	530953	530955	.	-	0	transcript_id "Ledus.S3G008000.t2"; gene_id "Ledus.S3G008000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6891.t1 is derived from g4335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35009301	35012067	.	-	.	Ledus.S1G431200
Ledus.S1	AUGUSTUS	transcript	35009301	35012067	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	stop_codon	35009298	35009300	.	-	0	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	CDS	35009301	35009357	1	-	0	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	exon	35009301	35009357	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	intron	35009358	35009516	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	CDS	35009517	35009610	1	-	1	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	exon	35009517	35009610	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	intron	35009611	35009708	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	CDS	35009709	35009776	1	-	0	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	exon	35009709	35009776	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	intron	35009777	35009945	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	CDS	35009946	35010035	1	-	0	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	exon	35009946	35010035	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	intron	35010036	35010118	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	CDS	35010119	35010895	0.96	-	0	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	exon	35010119	35010895	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	intron	35010896	35011001	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	CDS	35011002	35011279	0.99	-	2	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	exon	35011002	35011279	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	intron	35011280	35011409	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	CDS	35011410	35011506	1	-	0	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	exon	35011410	35011506	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	intron	35011507	35012052	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	CDS	35012053	35012067	1	-	0	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	exon	35012053	35012067	.	-	.	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
Ledus.S1	AUGUSTUS	start_codon	35012065	35012067	.	-	0	transcript_id "Ledus.S1G431200.t1"; gene_id "Ledus.S1G431200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6015.t1 is derived from g3458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28343526	28343831	.	-	.	Ledus.S1G343600
Ledus.S1	AUGUSTUS	transcript	28343526	28343831	.	-	.	transcript_id "Ledus.S1G343600.t1"; gene_id "Ledus.S1G343600"
Ledus.S1	AUGUSTUS	stop_codon	28343523	28343525	.	-	0	transcript_id "Ledus.S1G343600.t1"; gene_id "Ledus.S1G343600"
Ledus.S1	AUGUSTUS	CDS	28343526	28343831	0.99	-	0	transcript_id "Ledus.S1G343600.t1"; gene_id "Ledus.S1G343600"
Ledus.S1	AUGUSTUS	exon	28343526	28343831	.	-	.	transcript_id "Ledus.S1G343600.t1"; gene_id "Ledus.S1G343600"
Ledus.S1	AUGUSTUS	start_codon	28343829	28343831	.	-	0	transcript_id "Ledus.S1G343600.t1"; gene_id "Ledus.S1G343600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8012.t1 is derived from g12683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8477118	8479425	.	-	.	Ledus.S5G079000
Ledus.S5	AUGUSTUS	transcript	8477118	8479425	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	stop_codon	8477115	8477117	.	-	0	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	CDS	8477118	8477205	1	-	1	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	exon	8477118	8477205	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	intron	8477206	8477286	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	CDS	8477287	8477358	1	-	1	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	exon	8477287	8477358	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	intron	8477359	8477450	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	CDS	8477451	8477522	1	-	1	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	exon	8477451	8477522	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	intron	8477523	8477655	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	CDS	8477656	8477727	1	-	1	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	exon	8477656	8477727	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	intron	8477728	8477816	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	CDS	8477817	8477897	1	-	1	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	exon	8477817	8477897	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	intron	8477898	8478020	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	CDS	8478021	8478164	0.98	-	1	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	exon	8478021	8478164	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	intron	8478165	8478265	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	CDS	8478266	8478337	1	-	1	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	exon	8478266	8478337	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	intron	8478338	8478430	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	CDS	8478431	8478502	1	-	1	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	exon	8478431	8478502	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	intron	8478503	8478585	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	CDS	8478586	8478657	1	-	1	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	exon	8478586	8478657	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	intron	8478658	8478760	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	CDS	8478761	8478914	1	-	2	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	exon	8478761	8478914	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	intron	8478915	8479331	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	CDS	8479332	8479425	1	-	0	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	exon	8479332	8479425	.	-	.	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
Ledus.S5	AUGUSTUS	start_codon	8479423	8479425	.	-	0	transcript_id "Ledus.S5G079000.t1"; gene_id "Ledus.S5G079000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2767.t1 is derived from g201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3404588	3407176	.	+	.	Ledus.S1G018800
Ledus.S1	AUGUSTUS	transcript	3404588	3407176	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	start_codon	3404588	3404590	.	+	0	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	CDS	3404588	3404615	0.89	+	0	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	exon	3404588	3404615	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	intron	3404616	3404931	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	CDS	3404932	3404937	0.89	+	2	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	exon	3404932	3404937	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	intron	3404938	3405020	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	CDS	3405021	3405070	0.54	+	2	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	exon	3405021	3405070	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	intron	3405071	3405170	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	CDS	3405171	3405297	0.96	+	0	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	exon	3405171	3405297	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	intron	3405298	3405803	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	CDS	3405804	3405887	0.27	+	2	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	exon	3405804	3405887	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	intron	3405888	3406084	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	CDS	3406085	3406344	0.41	+	2	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	exon	3406085	3406344	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	intron	3406345	3406577	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	CDS	3406578	3406692	0.89	+	0	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	exon	3406578	3406692	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	intron	3406693	3406780	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	CDS	3406781	3406947	0.43	+	2	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	exon	3406781	3406947	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	intron	3406948	3407158	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	CDS	3407159	3407176	0.83	+	0	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	exon	3407159	3407176	.	+	.	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
Ledus.S1	AUGUSTUS	stop_codon	3407177	3407179	.	+	0	transcript_id "Ledus.S1G018800.t1"; gene_id "Ledus.S1G018800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7456.t1 is derived from g12127.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2857909	2858662	.	+	.	Ledus.S5G023400
Ledus.S5	AUGUSTUS	transcript	2857909	2858662	.	+	.	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	start_codon	2857909	2857911	.	+	0	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	CDS	2857909	2858106	0.9	+	0	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	exon	2857909	2858106	.	+	.	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	intron	2858107	2858189	.	+	.	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	CDS	2858190	2858217	0.7	+	0	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	exon	2858190	2858217	.	+	.	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	intron	2858218	2858417	.	+	.	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	CDS	2858418	2858494	0.77	+	2	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	exon	2858418	2858494	.	+	.	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	intron	2858495	2858650	.	+	.	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	CDS	2858651	2858662	1	+	0	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	exon	2858651	2858662	.	+	.	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
Ledus.S5	AUGUSTUS	stop_codon	2858663	2858665	.	+	0	transcript_id "Ledus.S5G023400.t1"; gene_id "Ledus.S5G023400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6782.t1 is derived from g4226.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34116690	34117631	.	+	.	Ledus.S1G420300
Ledus.S1	AUGUSTUS	transcript	34116690	34117631	.	+	.	transcript_id "Ledus.S1G420300.t1"; gene_id "Ledus.S1G420300"
Ledus.S1	AUGUSTUS	start_codon	34116690	34116692	.	+	0	transcript_id "Ledus.S1G420300.t1"; gene_id "Ledus.S1G420300"
Ledus.S1	AUGUSTUS	CDS	34116690	34117631	0.93	+	0	transcript_id "Ledus.S1G420300.t1"; gene_id "Ledus.S1G420300"
Ledus.S1	AUGUSTUS	exon	34116690	34117631	.	+	.	transcript_id "Ledus.S1G420300.t1"; gene_id "Ledus.S1G420300"
Ledus.S1	AUGUSTUS	stop_codon	34117632	34117634	.	+	0	transcript_id "Ledus.S1G420300.t1"; gene_id "Ledus.S1G420300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10026.t1 is derived from g11056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12037539	12037997	.	-	.	Ledus.S3G150300
Ledus.S3	AUGUSTUS	transcript	12037539	12037997	.	-	.	transcript_id "Ledus.S3G150300.t1"; gene_id "Ledus.S3G150300"
Ledus.S3	AUGUSTUS	stop_codon	12037536	12037538	.	-	0	transcript_id "Ledus.S3G150300.t1"; gene_id "Ledus.S3G150300"
Ledus.S3	AUGUSTUS	CDS	12037539	12037997	0.43	-	0	transcript_id "Ledus.S3G150300.t1"; gene_id "Ledus.S3G150300"
Ledus.S3	AUGUSTUS	exon	12037539	12037997	.	-	.	transcript_id "Ledus.S3G150300.t1"; gene_id "Ledus.S3G150300"
Ledus.S3	AUGUSTUS	start_codon	12037995	12037997	.	-	0	transcript_id "Ledus.S3G150300.t1"; gene_id "Ledus.S3G150300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg636.t1 is derived from g7497.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3829480	3829826	.	+	.	Ledus.S2G051800
Ledus.S2	AUGUSTUS	transcript	3829480	3829826	.	+	.	transcript_id "Ledus.S2G051800.t1"; gene_id "Ledus.S2G051800"
Ledus.S2	AUGUSTUS	start_codon	3829480	3829482	.	+	0	transcript_id "Ledus.S2G051800.t1"; gene_id "Ledus.S2G051800"
Ledus.S2	AUGUSTUS	CDS	3829480	3829506	0.86	+	0	transcript_id "Ledus.S2G051800.t1"; gene_id "Ledus.S2G051800"
Ledus.S2	AUGUSTUS	exon	3829480	3829506	.	+	.	transcript_id "Ledus.S2G051800.t1"; gene_id "Ledus.S2G051800"
Ledus.S2	AUGUSTUS	intron	3829507	3829649	.	+	.	transcript_id "Ledus.S2G051800.t1"; gene_id "Ledus.S2G051800"
Ledus.S2	AUGUSTUS	CDS	3829650	3829826	0.39	+	0	transcript_id "Ledus.S2G051800.t1"; gene_id "Ledus.S2G051800"
Ledus.S2	AUGUSTUS	exon	3829650	3829826	.	+	.	transcript_id "Ledus.S2G051800.t1"; gene_id "Ledus.S2G051800"
Ledus.S2	AUGUSTUS	stop_codon	3829827	3829829	.	+	0	transcript_id "Ledus.S2G051800.t1"; gene_id "Ledus.S2G051800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3676.t1 is derived from g1112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10621641	10622741	.	+	.	Ledus.S1G109700
Ledus.S1	AUGUSTUS	transcript	10621641	10622741	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	start_codon	10621641	10621643	.	+	0	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	CDS	10621641	10621693	0.96	+	0	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	exon	10621641	10621693	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	intron	10621694	10621805	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	CDS	10621806	10621916	0.81	+	1	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	exon	10621806	10621916	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	intron	10621917	10621997	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	CDS	10621998	10622096	1	+	1	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	exon	10621998	10622096	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	intron	10622097	10622175	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	CDS	10622176	10622233	1	+	1	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	exon	10622176	10622233	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	intron	10622234	10622309	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	CDS	10622310	10622399	1	+	0	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	exon	10622310	10622399	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	intron	10622400	10622479	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	CDS	10622480	10622597	1	+	0	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	exon	10622480	10622597	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	intron	10622598	10622676	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	CDS	10622677	10622741	0.87	+	2	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	exon	10622677	10622741	.	+	.	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
Ledus.S1	AUGUSTUS	stop_codon	10622742	10622744	.	+	0	transcript_id "Ledus.S1G109700.t1"; gene_id "Ledus.S1G109700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2000.t1 is derived from g8863.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14124090	14127766	.	+	.	Ledus.S2G188200
Ledus.S2	AUGUSTUS	transcript	14124090	14127766	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	start_codon	14124090	14124092	.	+	0	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	CDS	14124090	14124227	0.36	+	0	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	exon	14124090	14124227	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	intron	14124228	14124329	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	CDS	14124330	14124402	0.54	+	0	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	exon	14124330	14124402	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	intron	14124403	14124633	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	CDS	14124634	14124930	0.96	+	2	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	exon	14124634	14124930	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	intron	14124931	14125088	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	CDS	14125089	14125214	1	+	2	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	exon	14125089	14125214	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	intron	14125215	14125298	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	CDS	14125299	14125406	0.69	+	2	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	exon	14125299	14125406	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	intron	14125407	14125509	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	CDS	14125510	14125610	0.71	+	2	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	exon	14125510	14125610	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	intron	14125611	14125697	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	CDS	14125698	14126088	0.55	+	0	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	exon	14125698	14126088	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	intron	14126089	14126200	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	CDS	14126201	14126551	0.58	+	2	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	exon	14126201	14126551	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	intron	14126552	14126867	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	CDS	14126868	14127040	0.96	+	2	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	exon	14126868	14127040	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	intron	14127041	14127152	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	CDS	14127153	14127247	0.91	+	0	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	exon	14127153	14127247	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	intron	14127248	14127381	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	CDS	14127382	14127766	0.51	+	1	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	exon	14127382	14127766	.	+	.	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
Ledus.S2	AUGUSTUS	stop_codon	14127767	14127769	.	+	0	transcript_id "Ledus.S2G188200.t1"; gene_id "Ledus.S2G188200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11574.t1 is derived from g5192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5341480	5342018	.	+	.	Ledus.S4G073000
Ledus.S4	AUGUSTUS	transcript	5341480	5342018	.	+	.	transcript_id "Ledus.S4G073000.t1"; gene_id "Ledus.S4G073000"
Ledus.S4	AUGUSTUS	start_codon	5341480	5341482	.	+	0	transcript_id "Ledus.S4G073000.t1"; gene_id "Ledus.S4G073000"
Ledus.S4	AUGUSTUS	CDS	5341480	5341486	0.87	+	0	transcript_id "Ledus.S4G073000.t1"; gene_id "Ledus.S4G073000"
Ledus.S4	AUGUSTUS	exon	5341480	5341486	.	+	.	transcript_id "Ledus.S4G073000.t1"; gene_id "Ledus.S4G073000"
Ledus.S4	AUGUSTUS	intron	5341487	5341773	.	+	.	transcript_id "Ledus.S4G073000.t1"; gene_id "Ledus.S4G073000"
Ledus.S4	AUGUSTUS	CDS	5341774	5342018	0.46	+	2	transcript_id "Ledus.S4G073000.t1"; gene_id "Ledus.S4G073000"
Ledus.S4	AUGUSTUS	exon	5341774	5342018	.	+	.	transcript_id "Ledus.S4G073000.t1"; gene_id "Ledus.S4G073000"
Ledus.S4	AUGUSTUS	stop_codon	5342019	5342021	.	+	0	transcript_id "Ledus.S4G073000.t1"; gene_id "Ledus.S4G073000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5528.t1 is derived from g2967.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24953094	24955317	.	-	.	Ledus.S1G294900
Ledus.S1	AUGUSTUS	transcript	24953094	24955317	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	stop_codon	24953091	24953093	.	-	0	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	CDS	24953094	24953681	0.91	-	0	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	exon	24953094	24953681	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	intron	24953682	24953884	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	CDS	24953885	24953963	1	-	1	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	exon	24953885	24953963	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	intron	24953964	24954133	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	CDS	24954134	24954209	1	-	2	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	exon	24954134	24954209	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	intron	24954210	24954286	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	CDS	24954287	24954377	1	-	0	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	exon	24954287	24954377	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	intron	24954378	24954461	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	CDS	24954462	24954532	1	-	2	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	exon	24954462	24954532	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	intron	24954533	24954739	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	CDS	24954740	24954791	1	-	0	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	exon	24954740	24954791	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	intron	24954792	24954924	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	CDS	24954925	24955022	1	-	2	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	exon	24954925	24955022	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	intron	24955023	24955178	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	CDS	24955179	24955317	0.97	-	0	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	exon	24955179	24955317	.	-	.	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
Ledus.S1	AUGUSTUS	start_codon	24955315	24955317	.	-	0	transcript_id "Ledus.S1G294900.t1"; gene_id "Ledus.S1G294900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6101.t1 is derived from g3544.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28911120	28913260	.	+	.	Ledus.S1G352200
Ledus.S1	AUGUSTUS	transcript	28911120	28913260	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	start_codon	28911120	28911122	.	+	0	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	CDS	28911120	28911340	0.38	+	0	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	exon	28911120	28911340	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	intron	28911341	28911438	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	CDS	28911439	28911599	0.81	+	1	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	exon	28911439	28911599	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	intron	28911600	28911688	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	CDS	28911689	28911793	1	+	2	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	exon	28911689	28911793	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	intron	28911794	28911876	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	CDS	28911877	28911947	1	+	2	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	exon	28911877	28911947	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	intron	28911948	28912033	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	CDS	28912034	28912099	1	+	0	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	exon	28912034	28912099	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	intron	28912100	28912185	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	CDS	28912186	28912308	1	+	0	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	exon	28912186	28912308	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	intron	28912309	28912397	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	CDS	28912398	28912609	1	+	0	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	exon	28912398	28912609	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	intron	28912610	28912699	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	CDS	28912700	28912748	1	+	1	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	exon	28912700	28912748	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	intron	28912749	28912832	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	CDS	28912833	28913103	1	+	0	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	exon	28912833	28913103	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	intron	28913104	28913192	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	CDS	28913193	28913260	1	+	2	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	exon	28913193	28913260	.	+	.	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
Ledus.S1	AUGUSTUS	stop_codon	28913261	28913263	.	+	0	transcript_id "Ledus.S1G352200.t1"; gene_id "Ledus.S1G352200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5043.t1 is derived from g2482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21263274	21264000	.	+	.	Ledus.S1G246400
Ledus.S1	AUGUSTUS	transcript	21263274	21264000	.	+	.	transcript_id "Ledus.S1G246400.t1"; gene_id "Ledus.S1G246400"
Ledus.S1	AUGUSTUS	start_codon	21263274	21263276	.	+	0	transcript_id "Ledus.S1G246400.t1"; gene_id "Ledus.S1G246400"
Ledus.S1	AUGUSTUS	CDS	21263274	21263316	1	+	0	transcript_id "Ledus.S1G246400.t1"; gene_id "Ledus.S1G246400"
Ledus.S1	AUGUSTUS	exon	21263274	21263316	.	+	.	transcript_id "Ledus.S1G246400.t1"; gene_id "Ledus.S1G246400"
Ledus.S1	AUGUSTUS	intron	21263317	21263531	.	+	.	transcript_id "Ledus.S1G246400.t1"; gene_id "Ledus.S1G246400"
Ledus.S1	AUGUSTUS	CDS	21263532	21263603	1	+	2	transcript_id "Ledus.S1G246400.t1"; gene_id "Ledus.S1G246400"
Ledus.S1	AUGUSTUS	exon	21263532	21263603	.	+	.	transcript_id "Ledus.S1G246400.t1"; gene_id "Ledus.S1G246400"
Ledus.S1	AUGUSTUS	intron	21263604	21263896	.	+	.	transcript_id "Ledus.S1G246400.t1"; gene_id "Ledus.S1G246400"
Ledus.S1	AUGUSTUS	CDS	21263897	21264000	0.89	+	2	transcript_id "Ledus.S1G246400.t1"; gene_id "Ledus.S1G246400"
Ledus.S1	AUGUSTUS	exon	21263897	21264000	.	+	.	transcript_id "Ledus.S1G246400.t1"; gene_id "Ledus.S1G246400"
Ledus.S1	AUGUSTUS	stop_codon	21264001	21264003	.	+	0	transcript_id "Ledus.S1G246400.t1"; gene_id "Ledus.S1G246400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4239.t1 is derived from g1675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15710176	15710445	.	-	.	Ledus.S1G166000
Ledus.S1	AUGUSTUS	transcript	15710176	15710445	.	-	.	transcript_id "Ledus.S1G166000.t1"; gene_id "Ledus.S1G166000"
Ledus.S1	AUGUSTUS	stop_codon	15710173	15710175	.	-	0	transcript_id "Ledus.S1G166000.t1"; gene_id "Ledus.S1G166000"
Ledus.S1	AUGUSTUS	CDS	15710176	15710445	0.63	-	0	transcript_id "Ledus.S1G166000.t1"; gene_id "Ledus.S1G166000"
Ledus.S1	AUGUSTUS	exon	15710176	15710445	.	-	.	transcript_id "Ledus.S1G166000.t1"; gene_id "Ledus.S1G166000"
Ledus.S1	AUGUSTUS	start_codon	15710443	15710445	.	-	0	transcript_id "Ledus.S1G166000.t1"; gene_id "Ledus.S1G166000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5732.t1 is derived from g3171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26333575	26335680	.	+	.	Ledus.S1G315300
Ledus.S1	AUGUSTUS	transcript	26333575	26335680	.	+	.	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	start_codon	26333575	26333577	.	+	0	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	CDS	26333575	26333798	0.4	+	0	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	exon	26333575	26333798	.	+	.	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	intron	26333799	26333883	.	+	.	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	CDS	26333884	26334415	0.58	+	1	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	exon	26333884	26334415	.	+	.	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	intron	26334416	26334726	.	+	.	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	CDS	26334727	26334787	0.36	+	0	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	exon	26334727	26334787	.	+	.	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	intron	26334788	26334993	.	+	.	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	CDS	26334994	26335042	0.4	+	2	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	exon	26334994	26335042	.	+	.	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	intron	26335043	26335215	.	+	.	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	CDS	26335216	26335320	1	+	1	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	exon	26335216	26335320	.	+	.	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	intron	26335321	26335589	.	+	.	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	CDS	26335590	26335680	0.96	+	1	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	exon	26335590	26335680	.	+	.	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
Ledus.S1	AUGUSTUS	stop_codon	26335681	26335683	.	+	0	transcript_id "Ledus.S1G315300.t1"; gene_id "Ledus.S1G315300"
# This transcript jg7713.t2 is derived from g12384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7714.t1 is derived from g12385.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5348167	5348512	.	-	.	Ledus.S5G049200
Ledus.S5	AUGUSTUS	transcript	5348167	5348512	.	-	.	transcript_id "Ledus.S5G049200.t1"; gene_id "Ledus.S5G049200"
Ledus.S5	AUGUSTUS	stop_codon	5348164	5348166	.	-	0	transcript_id "Ledus.S5G049200.t1"; gene_id "Ledus.S5G049200"
Ledus.S5	AUGUSTUS	CDS	5348167	5348245	0.86	-	1	transcript_id "Ledus.S5G049200.t1"; gene_id "Ledus.S5G049200"
Ledus.S5	AUGUSTUS	exon	5348167	5348245	.	-	.	transcript_id "Ledus.S5G049200.t1"; gene_id "Ledus.S5G049200"
Ledus.S5	AUGUSTUS	intron	5348246	5348324	.	-	.	transcript_id "Ledus.S5G049200.t1"; gene_id "Ledus.S5G049200"
Ledus.S5	AUGUSTUS	CDS	5348325	5348512	0.34	-	0	transcript_id "Ledus.S5G049200.t1"; gene_id "Ledus.S5G049200"
Ledus.S5	AUGUSTUS	exon	5348325	5348512	.	-	.	transcript_id "Ledus.S5G049200.t1"; gene_id "Ledus.S5G049200"
Ledus.S5	AUGUSTUS	start_codon	5348510	5348512	.	-	0	transcript_id "Ledus.S5G049200.t1"; gene_id "Ledus.S5G049200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2011.t1 is derived from g8874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14168324	14169208	.	-	.	Ledus.S2G189300
Ledus.S2	AUGUSTUS	transcript	14168324	14169208	.	-	.	transcript_id "Ledus.S2G189300.t1"; gene_id "Ledus.S2G189300"
Ledus.S2	AUGUSTUS	stop_codon	14168321	14168323	.	-	0	transcript_id "Ledus.S2G189300.t1"; gene_id "Ledus.S2G189300"
Ledus.S2	AUGUSTUS	CDS	14168324	14168460	0.97	-	2	transcript_id "Ledus.S2G189300.t1"; gene_id "Ledus.S2G189300"
Ledus.S2	AUGUSTUS	exon	14168324	14168460	.	-	.	transcript_id "Ledus.S2G189300.t1"; gene_id "Ledus.S2G189300"
Ledus.S2	AUGUSTUS	intron	14168461	14168579	.	-	.	transcript_id "Ledus.S2G189300.t1"; gene_id "Ledus.S2G189300"
Ledus.S2	AUGUSTUS	CDS	14168580	14168976	0.99	-	0	transcript_id "Ledus.S2G189300.t1"; gene_id "Ledus.S2G189300"
Ledus.S2	AUGUSTUS	exon	14168580	14168976	.	-	.	transcript_id "Ledus.S2G189300.t1"; gene_id "Ledus.S2G189300"
Ledus.S2	AUGUSTUS	intron	14168977	14169082	.	-	.	transcript_id "Ledus.S2G189300.t1"; gene_id "Ledus.S2G189300"
Ledus.S2	AUGUSTUS	CDS	14169083	14169208	0.51	-	0	transcript_id "Ledus.S2G189300.t1"; gene_id "Ledus.S2G189300"
Ledus.S2	AUGUSTUS	exon	14169083	14169208	.	-	.	transcript_id "Ledus.S2G189300.t1"; gene_id "Ledus.S2G189300"
Ledus.S2	AUGUSTUS	start_codon	14169206	14169208	.	-	0	transcript_id "Ledus.S2G189300.t1"; gene_id "Ledus.S2G189300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2165.t1 is derived from g9028.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15485013	15486266	.	-	.	Ledus.S2G204700
Ledus.S2	AUGUSTUS	transcript	15485013	15486266	.	-	.	transcript_id "Ledus.S2G204700.t1"; gene_id "Ledus.S2G204700"
Ledus.S2	AUGUSTUS	stop_codon	15485010	15485012	.	-	0	transcript_id "Ledus.S2G204700.t1"; gene_id "Ledus.S2G204700"
Ledus.S2	AUGUSTUS	CDS	15485013	15486266	0.56	-	0	transcript_id "Ledus.S2G204700.t1"; gene_id "Ledus.S2G204700"
Ledus.S2	AUGUSTUS	exon	15485013	15486266	.	-	.	transcript_id "Ledus.S2G204700.t1"; gene_id "Ledus.S2G204700"
Ledus.S2	AUGUSTUS	start_codon	15486264	15486266	.	-	0	transcript_id "Ledus.S2G204700.t1"; gene_id "Ledus.S2G204700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg928.t1 is derived from g7789.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6191636	6192970	.	-	.	Ledus.S2G081000
Ledus.S2	AUGUSTUS	transcript	6191636	6192970	.	-	.	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	stop_codon	6191633	6191635	.	-	0	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	CDS	6191636	6191715	0.52	-	2	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	exon	6191636	6191715	.	-	.	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	intron	6191716	6191872	.	-	.	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	CDS	6191873	6192033	0.72	-	1	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	exon	6191873	6192033	.	-	.	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	intron	6192034	6192117	.	-	.	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	CDS	6192118	6192293	1	-	0	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	exon	6192118	6192293	.	-	.	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	intron	6192294	6192394	.	-	.	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	CDS	6192395	6192970	1	-	0	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	exon	6192395	6192970	.	-	.	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
Ledus.S2	AUGUSTUS	start_codon	6192968	6192970	.	-	0	transcript_id "Ledus.S2G081000.t1"; gene_id "Ledus.S2G081000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9490.t1 is derived from g10520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7337418	7337696	.	+	.	Ledus.S3G096700
Ledus.S3	AUGUSTUS	transcript	7337418	7337696	.	+	.	transcript_id "Ledus.S3G096700.t1"; gene_id "Ledus.S3G096700"
Ledus.S3	AUGUSTUS	start_codon	7337418	7337420	.	+	0	transcript_id "Ledus.S3G096700.t1"; gene_id "Ledus.S3G096700"
Ledus.S3	AUGUSTUS	CDS	7337418	7337696	0.51	+	0	transcript_id "Ledus.S3G096700.t1"; gene_id "Ledus.S3G096700"
Ledus.S3	AUGUSTUS	exon	7337418	7337696	.	+	.	transcript_id "Ledus.S3G096700.t1"; gene_id "Ledus.S3G096700"
Ledus.S3	AUGUSTUS	stop_codon	7337697	7337699	.	+	0	transcript_id "Ledus.S3G096700.t1"; gene_id "Ledus.S3G096700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4622.t1 is derived from g2059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18327225	18333530	.	+	.	Ledus.S1G204300
Ledus.S1	AUGUSTUS	transcript	18327225	18333530	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	start_codon	18327225	18327227	.	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18327225	18327290	1	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18327225	18327290	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18327291	18327484	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18327485	18327574	1	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18327485	18327574	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18327575	18327689	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18327690	18327801	1	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18327690	18327801	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18327802	18327995	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18327996	18328023	1	+	2	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18327996	18328023	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18328024	18328122	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18328123	18328221	1	+	1	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18328123	18328221	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18328222	18328343	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18328344	18328413	1	+	1	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18328344	18328413	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18328414	18328567	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18328568	18328677	1	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18328568	18328677	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18328678	18328778	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18328779	18328874	0.98	+	1	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18328779	18328874	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18328875	18329003	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18329004	18329121	1	+	1	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18329004	18329121	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18329122	18329252	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18329253	18329338	1	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18329253	18329338	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18329339	18329455	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18329456	18329516	1	+	1	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18329456	18329516	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18329517	18329685	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18329686	18329750	1	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18329686	18329750	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18329751	18329847	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18329848	18329953	1	+	1	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18329848	18329953	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18329954	18330037	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18330038	18330126	1	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18330038	18330126	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18330127	18330221	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18330222	18330340	0.94	+	1	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18330222	18330340	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18330341	18330496	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18330497	18330547	0.54	+	2	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18330497	18330547	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18330548	18330697	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18330698	18330731	0.7	+	2	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18330698	18330731	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18330732	18331402	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18331403	18331700	0.82	+	1	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18331403	18331700	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18331701	18331812	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18331813	18331941	0.82	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18331813	18331941	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18331942	18332105	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18332106	18332237	1	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18332106	18332237	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18332238	18332318	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18332319	18332461	1	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18332319	18332461	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18332462	18332627	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18332628	18332725	1	+	1	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18332628	18332725	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18332726	18332823	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18332824	18332918	1	+	2	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18332824	18332918	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18332919	18333017	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18333018	18333071	1	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18333018	18333071	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	intron	18333072	18333272	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	CDS	18333273	18333530	0.96	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	exon	18333273	18333530	.	+	.	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
Ledus.S1	AUGUSTUS	stop_codon	18333531	18333533	.	+	0	transcript_id "Ledus.S1G204300.t1"; gene_id "Ledus.S1G204300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4125.t1 is derived from g1561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14836824	14841894	.	-	.	Ledus.S1G154600
Ledus.S1	AUGUSTUS	transcript	14836824	14841894	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	stop_codon	14836821	14836823	.	-	0	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14836824	14837135	1	-	0	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14836824	14837135	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	intron	14837136	14837217	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14837218	14837914	1	-	1	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14837218	14837914	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	intron	14837915	14838034	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14838035	14838564	0.97	-	0	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14838035	14838564	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	intron	14838565	14838668	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14838669	14838716	1	-	0	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14838669	14838716	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	intron	14838717	14838878	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14838879	14839011	1	-	1	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14838879	14839011	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	intron	14839012	14839152	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14839153	14839409	0.91	-	0	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14839153	14839409	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	intron	14839410	14839562	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14839563	14839777	1	-	2	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14839563	14839777	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	intron	14839778	14839846	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14839847	14840126	1	-	0	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14839847	14840126	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	intron	14840127	14840235	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14840236	14840279	0.99	-	2	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14840236	14840279	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	intron	14840280	14840402	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14840403	14840457	0.99	-	0	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14840403	14840457	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	intron	14840458	14840600	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14840601	14840645	0.98	-	0	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14840601	14840645	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	intron	14840646	14840761	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14840762	14840851	1	-	0	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14840762	14840851	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	intron	14840852	14841039	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	CDS	14841040	14841894	1	-	0	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	exon	14841040	14841894	.	-	.	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
Ledus.S1	AUGUSTUS	start_codon	14841892	14841894	.	-	0	transcript_id "Ledus.S1G154600.t1"; gene_id "Ledus.S1G154600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7198.t1 is derived from g6729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2077030	2078493	.	-	.	Ledus.C7G025900
Ledus.C7	AUGUSTUS	transcript	2077030	2078493	.	-	.	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	stop_codon	2077027	2077029	.	-	0	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	CDS	2077030	2077254	0.94	-	0	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	exon	2077030	2077254	.	-	.	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	intron	2077255	2077359	.	-	.	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	CDS	2077360	2077650	1	-	0	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	exon	2077360	2077650	.	-	.	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	intron	2077651	2077786	.	-	.	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	CDS	2077787	2078082	1	-	2	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	exon	2077787	2078082	.	-	.	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	intron	2078083	2078213	.	-	.	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	CDS	2078214	2078493	0.84	-	0	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	exon	2078214	2078493	.	-	.	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
Ledus.C7	AUGUSTUS	start_codon	2078491	2078493	.	-	0	transcript_id "Ledus.C7G025900.t1"; gene_id "Ledus.C7G025900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5436.t1 is derived from g2875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24192173	24192613	.	+	.	Ledus.S1G285700
Ledus.S1	AUGUSTUS	transcript	24192173	24192613	.	+	.	transcript_id "Ledus.S1G285700.t1"; gene_id "Ledus.S1G285700"
Ledus.S1	AUGUSTUS	start_codon	24192173	24192175	.	+	0	transcript_id "Ledus.S1G285700.t1"; gene_id "Ledus.S1G285700"
Ledus.S1	AUGUSTUS	CDS	24192173	24192613	0.42	+	0	transcript_id "Ledus.S1G285700.t1"; gene_id "Ledus.S1G285700"
Ledus.S1	AUGUSTUS	exon	24192173	24192613	.	+	.	transcript_id "Ledus.S1G285700.t1"; gene_id "Ledus.S1G285700"
Ledus.S1	AUGUSTUS	stop_codon	24192614	24192616	.	+	0	transcript_id "Ledus.S1G285700.t1"; gene_id "Ledus.S1G285700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12930.t1 is derived from g4422.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	378152	378981	.	+	.	Ledus.C9G003800
Ledus.C9	AUGUSTUS	transcript	378152	378981	.	+	.	transcript_id "Ledus.C9G003800.t1"; gene_id "Ledus.C9G003800"
Ledus.C9	AUGUSTUS	start_codon	378152	378154	.	+	0	transcript_id "Ledus.C9G003800.t1"; gene_id "Ledus.C9G003800"
Ledus.C9	AUGUSTUS	CDS	378152	378184	0.99	+	0	transcript_id "Ledus.C9G003800.t1"; gene_id "Ledus.C9G003800"
Ledus.C9	AUGUSTUS	exon	378152	378184	.	+	.	transcript_id "Ledus.C9G003800.t1"; gene_id "Ledus.C9G003800"
Ledus.C9	AUGUSTUS	intron	378185	378545	.	+	.	transcript_id "Ledus.C9G003800.t1"; gene_id "Ledus.C9G003800"
Ledus.C9	AUGUSTUS	CDS	378546	378688	0.66	+	0	transcript_id "Ledus.C9G003800.t1"; gene_id "Ledus.C9G003800"
Ledus.C9	AUGUSTUS	exon	378546	378688	.	+	.	transcript_id "Ledus.C9G003800.t1"; gene_id "Ledus.C9G003800"
Ledus.C9	AUGUSTUS	intron	378689	378845	.	+	.	transcript_id "Ledus.C9G003800.t1"; gene_id "Ledus.C9G003800"
Ledus.C9	AUGUSTUS	CDS	378846	378981	0.64	+	1	transcript_id "Ledus.C9G003800.t1"; gene_id "Ledus.C9G003800"
Ledus.C9	AUGUSTUS	exon	378846	378981	.	+	.	transcript_id "Ledus.C9G003800.t1"; gene_id "Ledus.C9G003800"
Ledus.C9	AUGUSTUS	stop_codon	378982	378984	.	+	0	transcript_id "Ledus.C9G003800.t1"; gene_id "Ledus.C9G003800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8427.t1 is derived from g13099.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11576440	11577548	.	+	.	Ledus.S5G120500
Ledus.S5	AUGUSTUS	transcript	11576440	11577548	.	+	.	transcript_id "Ledus.S5G120500.t1"; gene_id "Ledus.S5G120500"
Ledus.S5	AUGUSTUS	start_codon	11576440	11576442	.	+	0	transcript_id "Ledus.S5G120500.t1"; gene_id "Ledus.S5G120500"
Ledus.S5	AUGUSTUS	CDS	11576440	11577316	0.53	+	0	transcript_id "Ledus.S5G120500.t1"; gene_id "Ledus.S5G120500"
Ledus.S5	AUGUSTUS	exon	11576440	11577316	.	+	.	transcript_id "Ledus.S5G120500.t1"; gene_id "Ledus.S5G120500"
Ledus.S5	AUGUSTUS	intron	11577317	11577417	.	+	.	transcript_id "Ledus.S5G120500.t1"; gene_id "Ledus.S5G120500"
Ledus.S5	AUGUSTUS	CDS	11577418	11577548	0.51	+	2	transcript_id "Ledus.S5G120500.t1"; gene_id "Ledus.S5G120500"
Ledus.S5	AUGUSTUS	exon	11577418	11577548	.	+	.	transcript_id "Ledus.S5G120500.t1"; gene_id "Ledus.S5G120500"
Ledus.S5	AUGUSTUS	stop_codon	11577549	11577551	.	+	0	transcript_id "Ledus.S5G120500.t1"; gene_id "Ledus.S5G120500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1052.t1 is derived from g7913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7014174	7017877	.	-	.	Ledus.S2G093400
Ledus.S2	AUGUSTUS	transcript	7014174	7017877	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	stop_codon	7014171	7014173	.	-	0	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	CDS	7014174	7014430	0.42	-	2	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	exon	7014174	7014430	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	intron	7014431	7014503	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	CDS	7014504	7015232	0.3	-	2	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	exon	7014504	7015232	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	intron	7015233	7015631	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	CDS	7015632	7015839	0.56	-	0	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	exon	7015632	7015839	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	intron	7015840	7016026	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	CDS	7016027	7016284	0.58	-	0	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	exon	7016027	7016284	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	intron	7016285	7016493	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	CDS	7016494	7016587	0.27	-	1	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	exon	7016494	7016587	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	intron	7016588	7017020	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	CDS	7017021	7017350	0.23	-	1	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	exon	7017021	7017350	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	intron	7017351	7017761	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	CDS	7017762	7017877	0.74	-	0	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	exon	7017762	7017877	.	-	.	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
Ledus.S2	AUGUSTUS	start_codon	7017875	7017877	.	-	0	transcript_id "Ledus.S2G093400.t1"; gene_id "Ledus.S2G093400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4466.t1 is derived from g1902.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17218145	17219830	.	-	.	Ledus.S1G188700
Ledus.S1	AUGUSTUS	transcript	17218145	17219830	.	-	.	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	stop_codon	17218142	17218144	.	-	0	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	CDS	17218145	17218565	0.65	-	1	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	exon	17218145	17218565	.	-	.	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	intron	17218566	17218662	.	-	.	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	CDS	17218663	17218760	0.61	-	0	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	exon	17218663	17218760	.	-	.	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	intron	17218761	17218906	.	-	.	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	CDS	17218907	17218982	1	-	1	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	exon	17218907	17218982	.	-	.	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	intron	17218983	17219139	.	-	.	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	CDS	17219140	17219227	1	-	2	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	exon	17219140	17219227	.	-	.	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	intron	17219228	17219529	.	-	.	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	CDS	17219530	17219611	0.87	-	0	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	exon	17219530	17219611	.	-	.	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	intron	17219612	17219728	.	-	.	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	CDS	17219729	17219830	0.75	-	0	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	exon	17219729	17219830	.	-	.	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
Ledus.S1	AUGUSTUS	start_codon	17219828	17219830	.	-	0	transcript_id "Ledus.S1G188700.t1"; gene_id "Ledus.S1G188700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2810.t1 is derived from g244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3890886	3893117	.	-	.	Ledus.S1G023100
Ledus.S1	AUGUSTUS	transcript	3890886	3893117	.	-	.	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	stop_codon	3890883	3890885	.	-	0	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	CDS	3890886	3891460	1	-	2	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	exon	3890886	3891460	.	-	.	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	intron	3891461	3891548	.	-	.	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	CDS	3891549	3891807	1	-	0	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	exon	3891549	3891807	.	-	.	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	intron	3891808	3891901	.	-	.	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	CDS	3891902	3892490	1	-	1	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	exon	3891902	3892490	.	-	.	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	intron	3892491	3892577	.	-	.	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	CDS	3892578	3892679	1	-	1	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	exon	3892578	3892679	.	-	.	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	intron	3892680	3892770	.	-	.	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	CDS	3892771	3893117	0.98	-	0	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	exon	3892771	3893117	.	-	.	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
Ledus.S1	AUGUSTUS	start_codon	3893115	3893117	.	-	0	transcript_id "Ledus.S1G023100.t1"; gene_id "Ledus.S1G023100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11378.t1 is derived from g4996.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3882959	3887054	.	+	.	Ledus.S4G053400
Ledus.S4	AUGUSTUS	transcript	3882959	3887054	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	start_codon	3882959	3882961	.	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3882959	3883117	0.36	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3882959	3883117	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3883118	3883325	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3883326	3883400	1	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3883326	3883400	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3883401	3883527	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3883528	3883635	1	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3883528	3883635	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3883636	3883769	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3883770	3883802	0.83	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3883770	3883802	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3883803	3883862	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3883863	3883907	0.83	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3883863	3883907	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3883908	3884001	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3884002	3884085	1	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3884002	3884085	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3884086	3884214	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3884215	3884343	1	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3884215	3884343	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3884344	3884479	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3884480	3884623	1	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3884480	3884623	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3884624	3884749	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3884750	3885157	0.94	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3884750	3885157	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3885158	3885249	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3885250	3885384	1	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3885250	3885384	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3885385	3885482	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3885483	3885719	1	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3885483	3885719	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3885720	3885828	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3885829	3886104	0.98	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3885829	3886104	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3886105	3886190	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3886191	3886340	1	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3886191	3886340	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3886341	3886431	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3886432	3886749	0.91	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3886432	3886749	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	intron	3886750	3886862	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	CDS	3886863	3887054	1	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	exon	3886863	3887054	.	+	.	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
Ledus.S4	AUGUSTUS	stop_codon	3887055	3887057	.	+	0	transcript_id "Ledus.S4G053400.t1"; gene_id "Ledus.S4G053400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9150.t1 is derived from g10180.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4894114	4894737	.	+	.	Ledus.S3G062700
Ledus.S3	AUGUSTUS	transcript	4894114	4894737	.	+	.	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	start_codon	4894114	4894116	.	+	0	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	CDS	4894114	4894150	0.87	+	0	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	exon	4894114	4894150	.	+	.	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	intron	4894151	4894272	.	+	.	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	CDS	4894273	4894430	1	+	2	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	exon	4894273	4894430	.	+	.	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	intron	4894431	4894512	.	+	.	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	CDS	4894513	4894614	1	+	0	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	exon	4894513	4894614	.	+	.	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	intron	4894615	4894695	.	+	.	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	CDS	4894696	4894737	1	+	0	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	exon	4894696	4894737	.	+	.	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
Ledus.S3	AUGUSTUS	stop_codon	4894738	4894740	.	+	0	transcript_id "Ledus.S3G062700.t1"; gene_id "Ledus.S3G062700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3296.t1 is derived from g731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7359780	7363826	.	+	.	Ledus.S1G071700
Ledus.S1	AUGUSTUS	transcript	7359780	7363826	.	+	.	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	start_codon	7359780	7359782	.	+	0	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	CDS	7359780	7360962	0.56	+	0	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	exon	7359780	7360962	.	+	.	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	intron	7360963	7361153	.	+	.	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	CDS	7361154	7361547	1	+	2	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	exon	7361154	7361547	.	+	.	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	intron	7361548	7362191	.	+	.	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	CDS	7362192	7362248	0.67	+	1	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	exon	7362192	7362248	.	+	.	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	intron	7362249	7362472	.	+	.	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	CDS	7362473	7362505	0.43	+	1	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	exon	7362473	7362505	.	+	.	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	intron	7362506	7362678	.	+	.	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	CDS	7362679	7363039	0.49	+	1	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	exon	7362679	7363039	.	+	.	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	intron	7363040	7363598	.	+	.	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	CDS	7363599	7363826	0.98	+	0	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	exon	7363599	7363826	.	+	.	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
Ledus.S1	AUGUSTUS	stop_codon	7363827	7363829	.	+	0	transcript_id "Ledus.S1G071700.t1"; gene_id "Ledus.S1G071700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10702.t1 is derived from g11732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17278014	17280489	.	+	.	Ledus.S3G217900
Ledus.S3	AUGUSTUS	transcript	17278014	17280489	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	start_codon	17278014	17278016	.	+	0	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	CDS	17278014	17278041	0.73	+	0	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	exon	17278014	17278041	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	intron	17278042	17278162	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	CDS	17278163	17278170	1	+	2	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	exon	17278163	17278170	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	intron	17278171	17278256	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	CDS	17278257	17278277	0.84	+	0	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	exon	17278257	17278277	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	intron	17278278	17278435	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	CDS	17278436	17278522	0.75	+	0	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	exon	17278436	17278522	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	intron	17278523	17278641	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	CDS	17278642	17278739	0.46	+	0	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	exon	17278642	17278739	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	intron	17278740	17278892	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	CDS	17278893	17279047	0.85	+	1	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	exon	17278893	17279047	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	intron	17279048	17279135	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	CDS	17279136	17279358	1	+	2	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	exon	17279136	17279358	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	intron	17279359	17279452	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	CDS	17279453	17279815	0.9	+	1	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	exon	17279453	17279815	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	intron	17279816	17280005	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	CDS	17280006	17280489	0.98	+	1	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	exon	17280006	17280489	.	+	.	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
Ledus.S3	AUGUSTUS	stop_codon	17280490	17280492	.	+	0	transcript_id "Ledus.S3G217900.t1"; gene_id "Ledus.S3G217900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg455.t1 is derived from g7316.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2671671	2674466	.	+	.	Ledus.S2G033700
Ledus.S2	AUGUSTUS	transcript	2672370	2674466	.	+	.	transcript_id "Ledus.S2G033700.t1"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	start_codon	2672370	2672372	.	+	0	transcript_id "Ledus.S2G033700.t1"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	CDS	2672370	2674466	0.88	+	0	transcript_id "Ledus.S2G033700.t1"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	exon	2672370	2674466	.	+	.	transcript_id "Ledus.S2G033700.t1"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	stop_codon	2674467	2674469	.	+	0	transcript_id "Ledus.S2G033700.t1"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	transcript	2671671	2674466	.	+	.	transcript_id "Ledus.S2G033700.t2"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	start_codon	2671671	2671673	.	+	0	transcript_id "Ledus.S2G033700.t2"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	CDS	2671671	2674466	0.85	+	0	transcript_id "Ledus.S2G033700.t2"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	exon	2671671	2674466	.	+	.	transcript_id "Ledus.S2G033700.t2"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	stop_codon	2674467	2674469	.	+	0	transcript_id "Ledus.S2G033700.t2"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	transcript	2673744	2674466	.	+	.	transcript_id "Ledus.S2G033700.t3"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	start_codon	2673744	2673746	.	+	0	transcript_id "Ledus.S2G033700.t3"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	CDS	2673744	2674466	0.81	+	0	transcript_id "Ledus.S2G033700.t3"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	exon	2673744	2674466	.	+	.	transcript_id "Ledus.S2G033700.t3"; gene_id "Ledus.S2G033700"
Ledus.S2	AUGUSTUS	stop_codon	2674467	2674469	.	+	0	transcript_id "Ledus.S2G033700.t3"; gene_id "Ledus.S2G033700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12837.t1 is derived from g11871.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	34036	34266	.	-	.	Ledus.C11G000100
Ledus.C11	AUGUSTUS	transcript	34036	34266	.	-	.	transcript_id "Ledus.C11G000100.t1"; gene_id "Ledus.C11G000100"
Ledus.C11	AUGUSTUS	stop_codon	34033	34035	.	-	0	transcript_id "Ledus.C11G000100.t1"; gene_id "Ledus.C11G000100"
Ledus.C11	AUGUSTUS	CDS	34036	34266	0.81	-	0	transcript_id "Ledus.C11G000100.t1"; gene_id "Ledus.C11G000100"
Ledus.C11	AUGUSTUS	exon	34036	34266	.	-	.	transcript_id "Ledus.C11G000100.t1"; gene_id "Ledus.C11G000100"
Ledus.C11	AUGUSTUS	start_codon	34264	34266	.	-	0	transcript_id "Ledus.C11G000100.t1"; gene_id "Ledus.C11G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4592.t1 is derived from g2029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17962043	17966404	.	-	.	Ledus.S1G201300
Ledus.S1	AUGUSTUS	transcript	17962043	17966404	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	stop_codon	17962040	17962042	.	-	0	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17962043	17962160	0.88	-	1	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17962043	17962160	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17962161	17962293	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17962294	17962355	0.89	-	0	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17962294	17962355	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17962356	17962525	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17962526	17962648	1	-	0	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17962526	17962648	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17962649	17962736	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17962737	17962890	1	-	1	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17962737	17962890	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17962891	17962984	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17962985	17963073	1	-	0	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17962985	17963073	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17963074	17963172	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17963173	17963398	1	-	1	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17963173	17963398	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17963399	17963541	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17963542	17963736	1	-	1	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17963542	17963736	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17963737	17963824	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17963825	17963880	1	-	0	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17963825	17963880	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17963881	17964016	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17964017	17964103	1	-	0	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17964017	17964103	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17964104	17964294	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17964295	17964378	1	-	0	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17964295	17964378	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17964379	17964469	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17964470	17964550	1	-	0	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17964470	17964550	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17964551	17964663	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17964664	17964933	0.95	-	0	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17964664	17964933	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17964934	17965030	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17965031	17965154	1	-	1	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17965031	17965154	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17965155	17965321	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17965322	17965420	1	-	1	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17965322	17965420	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17965421	17965516	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17965517	17965653	1	-	0	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17965517	17965653	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17965654	17965820	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17965821	17966106	1	-	1	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17965821	17966106	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	intron	17966107	17966222	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	CDS	17966223	17966404	0.9	-	0	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	exon	17966223	17966404	.	-	.	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
Ledus.S1	AUGUSTUS	start_codon	17966402	17966404	.	-	0	transcript_id "Ledus.S1G201300.t1"; gene_id "Ledus.S1G201300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg465.t1 is derived from g7326.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2733069	2733713	.	-	.	Ledus.S2G034700
Ledus.S2	AUGUSTUS	transcript	2733069	2733713	.	-	.	transcript_id "Ledus.S2G034700.t1"; gene_id "Ledus.S2G034700"
Ledus.S2	AUGUSTUS	stop_codon	2733066	2733068	.	-	0	transcript_id "Ledus.S2G034700.t1"; gene_id "Ledus.S2G034700"
Ledus.S2	AUGUSTUS	CDS	2733069	2733072	1	-	1	transcript_id "Ledus.S2G034700.t1"; gene_id "Ledus.S2G034700"
Ledus.S2	AUGUSTUS	exon	2733069	2733072	.	-	.	transcript_id "Ledus.S2G034700.t1"; gene_id "Ledus.S2G034700"
Ledus.S2	AUGUSTUS	intron	2733073	2733199	.	-	.	transcript_id "Ledus.S2G034700.t1"; gene_id "Ledus.S2G034700"
Ledus.S2	AUGUSTUS	CDS	2733200	2733463	0.38	-	1	transcript_id "Ledus.S2G034700.t1"; gene_id "Ledus.S2G034700"
Ledus.S2	AUGUSTUS	exon	2733200	2733463	.	-	.	transcript_id "Ledus.S2G034700.t1"; gene_id "Ledus.S2G034700"
Ledus.S2	AUGUSTUS	intron	2733464	2733690	.	-	.	transcript_id "Ledus.S2G034700.t1"; gene_id "Ledus.S2G034700"
Ledus.S2	AUGUSTUS	CDS	2733691	2733713	0.38	-	0	transcript_id "Ledus.S2G034700.t1"; gene_id "Ledus.S2G034700"
Ledus.S2	AUGUSTUS	exon	2733691	2733713	.	-	.	transcript_id "Ledus.S2G034700.t1"; gene_id "Ledus.S2G034700"
Ledus.S2	AUGUSTUS	start_codon	2733711	2733713	.	-	0	transcript_id "Ledus.S2G034700.t1"; gene_id "Ledus.S2G034700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3446.t1 is derived from g881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8411553	8412182	.	-	.	Ledus.S1G086700
Ledus.S1	AUGUSTUS	transcript	8411553	8412182	.	-	.	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	stop_codon	8411550	8411552	.	-	0	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	CDS	8411553	8411618	1	-	0	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	exon	8411553	8411618	.	-	.	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	intron	8411619	8411717	.	-	.	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	CDS	8411718	8411840	1	-	0	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	exon	8411718	8411840	.	-	.	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	intron	8411841	8411916	.	-	.	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	CDS	8411917	8412016	1	-	1	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	exon	8411917	8412016	.	-	.	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	intron	8412017	8412087	.	-	.	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	CDS	8412088	8412182	0.99	-	0	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	exon	8412088	8412182	.	-	.	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
Ledus.S1	AUGUSTUS	start_codon	8412180	8412182	.	-	0	transcript_id "Ledus.S1G086700.t1"; gene_id "Ledus.S1G086700"
# This transcript jg12383.t2 is derived from g6005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12383.t3 is derived from g6005.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg12384.t1 is derived from g6004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11563928	11567086	.	+	.	Ledus.S4G153900
Ledus.S4	AUGUSTUS	transcript	11563928	11567086	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	start_codon	11563928	11563930	.	+	0	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11563928	11563940	0.99	+	0	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11563928	11563940	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	intron	11563941	11564206	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11564207	11564307	1	+	2	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11564207	11564307	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	intron	11564308	11564504	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11564505	11564669	1	+	0	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11564505	11564669	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	intron	11564670	11564757	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11564758	11564888	1	+	0	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11564758	11564888	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	intron	11564889	11564989	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11564990	11565196	1	+	1	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11564990	11565196	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	intron	11565197	11565283	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11565284	11565462	0.99	+	1	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11565284	11565462	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	intron	11565463	11565613	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11565614	11565715	0.57	+	2	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11565614	11565715	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	intron	11565716	11565792	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11565793	11565949	0.8	+	2	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11565793	11565949	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	intron	11565950	11566050	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11566051	11566108	1	+	1	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11566051	11566108	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	intron	11566109	11566234	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11566235	11566352	0.79	+	0	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11566235	11566352	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	intron	11566353	11566471	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11566472	11566582	0.39	+	2	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11566472	11566582	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	intron	11566583	11566831	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11566832	11566900	0.46	+	2	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11566832	11566900	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	intron	11566901	11567069	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	CDS	11567070	11567086	0.58	+	2	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	exon	11567070	11567086	.	+	.	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
Ledus.S4	AUGUSTUS	stop_codon	11567087	11567089	.	+	0	transcript_id "Ledus.S4G153900.t1"; gene_id "Ledus.S4G153900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4235.t1 is derived from g1671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15698621	15698953	.	-	.	Ledus.S1G165600
Ledus.S1	AUGUSTUS	transcript	15698621	15698953	.	-	.	transcript_id "Ledus.S1G165600.t1"; gene_id "Ledus.S1G165600"
Ledus.S1	AUGUSTUS	stop_codon	15698618	15698620	.	-	0	transcript_id "Ledus.S1G165600.t1"; gene_id "Ledus.S1G165600"
Ledus.S1	AUGUSTUS	CDS	15698621	15698953	0.67	-	0	transcript_id "Ledus.S1G165600.t1"; gene_id "Ledus.S1G165600"
Ledus.S1	AUGUSTUS	exon	15698621	15698953	.	-	.	transcript_id "Ledus.S1G165600.t1"; gene_id "Ledus.S1G165600"
Ledus.S1	AUGUSTUS	start_codon	15698951	15698953	.	-	0	transcript_id "Ledus.S1G165600.t1"; gene_id "Ledus.S1G165600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2105.t1 is derived from g8968.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14739629	14740951	.	+	.	Ledus.S2G198700
Ledus.S2	AUGUSTUS	transcript	14739629	14740951	.	+	.	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	start_codon	14739629	14739631	.	+	0	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	CDS	14739629	14739678	1	+	0	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	exon	14739629	14739678	.	+	.	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	intron	14739679	14739766	.	+	.	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	CDS	14739767	14739815	1	+	1	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	exon	14739767	14739815	.	+	.	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	intron	14739816	14739898	.	+	.	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	CDS	14739899	14740027	1	+	0	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	exon	14739899	14740027	.	+	.	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	intron	14740028	14740223	.	+	.	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	CDS	14740224	14740306	1	+	0	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	exon	14740224	14740306	.	+	.	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	intron	14740307	14740878	.	+	.	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	CDS	14740879	14740951	1	+	1	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	exon	14740879	14740951	.	+	.	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
Ledus.S2	AUGUSTUS	stop_codon	14740952	14740954	.	+	0	transcript_id "Ledus.S2G198700.t1"; gene_id "Ledus.S2G198700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9530.t1 is derived from g10560.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7606542	7607239	.	-	.	Ledus.S3G100700
Ledus.S3	AUGUSTUS	transcript	7606542	7607239	.	-	.	transcript_id "Ledus.S3G100700.t1"; gene_id "Ledus.S3G100700"
Ledus.S3	AUGUSTUS	stop_codon	7606539	7606541	.	-	0	transcript_id "Ledus.S3G100700.t1"; gene_id "Ledus.S3G100700"
Ledus.S3	AUGUSTUS	CDS	7606542	7606891	0.59	-	2	transcript_id "Ledus.S3G100700.t1"; gene_id "Ledus.S3G100700"
Ledus.S3	AUGUSTUS	exon	7606542	7606891	.	-	.	transcript_id "Ledus.S3G100700.t1"; gene_id "Ledus.S3G100700"
Ledus.S3	AUGUSTUS	intron	7606892	7606977	.	-	.	transcript_id "Ledus.S3G100700.t1"; gene_id "Ledus.S3G100700"
Ledus.S3	AUGUSTUS	CDS	7606978	7607088	0.4	-	2	transcript_id "Ledus.S3G100700.t1"; gene_id "Ledus.S3G100700"
Ledus.S3	AUGUSTUS	exon	7606978	7607088	.	-	.	transcript_id "Ledus.S3G100700.t1"; gene_id "Ledus.S3G100700"
Ledus.S3	AUGUSTUS	intron	7607089	7607187	.	-	.	transcript_id "Ledus.S3G100700.t1"; gene_id "Ledus.S3G100700"
Ledus.S3	AUGUSTUS	CDS	7607188	7607239	0.57	-	0	transcript_id "Ledus.S3G100700.t1"; gene_id "Ledus.S3G100700"
Ledus.S3	AUGUSTUS	exon	7607188	7607239	.	-	.	transcript_id "Ledus.S3G100700.t1"; gene_id "Ledus.S3G100700"
Ledus.S3	AUGUSTUS	start_codon	7607237	7607239	.	-	0	transcript_id "Ledus.S3G100700.t1"; gene_id "Ledus.S3G100700"
# This transcript jg9820.t2 is derived from g10850.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9821.t1 is derived from g10851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10116700	10117176	.	-	.	Ledus.S3G129800
Ledus.S3	AUGUSTUS	transcript	10116700	10117176	.	-	.	transcript_id "Ledus.S3G129800.t1"; gene_id "Ledus.S3G129800"
Ledus.S3	AUGUSTUS	stop_codon	10116697	10116699	.	-	0	transcript_id "Ledus.S3G129800.t1"; gene_id "Ledus.S3G129800"
Ledus.S3	AUGUSTUS	CDS	10116700	10117176	0.65	-	0	transcript_id "Ledus.S3G129800.t1"; gene_id "Ledus.S3G129800"
Ledus.S3	AUGUSTUS	exon	10116700	10117176	.	-	.	transcript_id "Ledus.S3G129800.t1"; gene_id "Ledus.S3G129800"
Ledus.S3	AUGUSTUS	start_codon	10117174	10117176	.	-	0	transcript_id "Ledus.S3G129800.t1"; gene_id "Ledus.S3G129800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7450.t1 is derived from g12121.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2771683	2773374	.	-	.	Ledus.S5G022800
Ledus.S5	AUGUSTUS	transcript	2771683	2773374	.	-	.	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	stop_codon	2771680	2771682	.	-	0	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	CDS	2771683	2772093	1	-	0	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	exon	2771683	2772093	.	-	.	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	intron	2772094	2772200	.	-	.	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	CDS	2772201	2772345	1	-	1	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	exon	2772201	2772345	.	-	.	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	intron	2772346	2772433	.	-	.	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	CDS	2772434	2772572	1	-	2	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	exon	2772434	2772572	.	-	.	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	intron	2772573	2772865	.	-	.	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	CDS	2772866	2772897	1	-	1	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	exon	2772866	2772897	.	-	.	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	intron	2772898	2773114	.	-	.	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	CDS	2773115	2773374	0.99	-	0	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	exon	2773115	2773374	.	-	.	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	start_codon	2773372	2773374	.	-	0	transcript_id "Ledus.S5G022800.t1"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	transcript	2771683	2773374	.	-	.	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	stop_codon	2771680	2771682	.	-	0	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	CDS	2771683	2772093	1	-	0	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	exon	2771683	2772093	.	-	.	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	intron	2772094	2772200	.	-	.	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	CDS	2772201	2772345	1	-	1	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	exon	2772201	2772345	.	-	.	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	intron	2772346	2772433	.	-	.	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	CDS	2772434	2772572	0.91	-	2	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	exon	2772434	2772572	.	-	.	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	intron	2772573	2772719	.	-	.	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	CDS	2772720	2772802	0.96	-	1	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	exon	2772720	2772802	.	-	.	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	intron	2772803	2772901	.	-	.	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	CDS	2772902	2772988	0.99	-	1	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	exon	2772902	2772988	.	-	.	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	intron	2772989	2773114	.	-	.	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	CDS	2773115	2773374	0.99	-	0	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	exon	2773115	2773374	.	-	.	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
Ledus.S5	AUGUSTUS	start_codon	2773372	2773374	.	-	0	transcript_id "Ledus.S5G022800.t2"; gene_id "Ledus.S5G022800"
# This transcript jg5705.t2 is derived from g3144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5706.t1 is derived from g3145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26057731	26059345	.	-	.	Ledus.S1G312700
Ledus.S1	AUGUSTUS	transcript	26057731	26059345	.	-	.	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	stop_codon	26057728	26057730	.	-	0	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	CDS	26057731	26057914	1	-	1	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	exon	26057731	26057914	.	-	.	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	intron	26057915	26057988	.	-	.	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	CDS	26057989	26058073	1	-	2	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	exon	26057989	26058073	.	-	.	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	intron	26058074	26058154	.	-	.	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	CDS	26058155	26058321	1	-	1	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	exon	26058155	26058321	.	-	.	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	intron	26058322	26058407	.	-	.	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	CDS	26058408	26059345	1	-	0	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	exon	26058408	26059345	.	-	.	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
Ledus.S1	AUGUSTUS	start_codon	26059343	26059345	.	-	0	transcript_id "Ledus.S1G312700.t1"; gene_id "Ledus.S1G312700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7817.t1 is derived from g12488.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7045515	7046675	.	+	.	Ledus.S5G059500
Ledus.S5	AUGUSTUS	transcript	7045515	7046675	.	+	.	transcript_id "Ledus.S5G059500.t1"; gene_id "Ledus.S5G059500"
Ledus.S5	AUGUSTUS	start_codon	7045515	7045517	.	+	0	transcript_id "Ledus.S5G059500.t1"; gene_id "Ledus.S5G059500"
Ledus.S5	AUGUSTUS	CDS	7045515	7045868	0.6	+	0	transcript_id "Ledus.S5G059500.t1"; gene_id "Ledus.S5G059500"
Ledus.S5	AUGUSTUS	exon	7045515	7045868	.	+	.	transcript_id "Ledus.S5G059500.t1"; gene_id "Ledus.S5G059500"
Ledus.S5	AUGUSTUS	intron	7045869	7046031	.	+	.	transcript_id "Ledus.S5G059500.t1"; gene_id "Ledus.S5G059500"
Ledus.S5	AUGUSTUS	CDS	7046032	7046074	0.6	+	0	transcript_id "Ledus.S5G059500.t1"; gene_id "Ledus.S5G059500"
Ledus.S5	AUGUSTUS	exon	7046032	7046074	.	+	.	transcript_id "Ledus.S5G059500.t1"; gene_id "Ledus.S5G059500"
Ledus.S5	AUGUSTUS	intron	7046075	7046550	.	+	.	transcript_id "Ledus.S5G059500.t1"; gene_id "Ledus.S5G059500"
Ledus.S5	AUGUSTUS	CDS	7046551	7046675	0.93	+	2	transcript_id "Ledus.S5G059500.t1"; gene_id "Ledus.S5G059500"
Ledus.S5	AUGUSTUS	exon	7046551	7046675	.	+	.	transcript_id "Ledus.S5G059500.t1"; gene_id "Ledus.S5G059500"
Ledus.S5	AUGUSTUS	stop_codon	7046676	7046678	.	+	0	transcript_id "Ledus.S5G059500.t1"; gene_id "Ledus.S5G059500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8641.t1 is derived from g9671.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1044984	1046292	.	-	.	Ledus.S3G011800
Ledus.S3	AUGUSTUS	transcript	1044984	1046292	.	-	.	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	stop_codon	1044981	1044983	.	-	0	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	CDS	1044984	1045466	0.79	-	0	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	exon	1044984	1045466	.	-	.	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	intron	1045467	1045558	.	-	.	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	CDS	1045559	1045664	0.81	-	1	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	exon	1045559	1045664	.	-	.	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	intron	1045665	1045757	.	-	.	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	CDS	1045758	1045852	1	-	0	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	exon	1045758	1045852	.	-	.	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	intron	1045853	1045948	.	-	.	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	CDS	1045949	1046106	1	-	2	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	exon	1045949	1046106	.	-	.	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	intron	1046107	1046210	.	-	.	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	CDS	1046211	1046292	1	-	0	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	exon	1046211	1046292	.	-	.	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
Ledus.S3	AUGUSTUS	start_codon	1046290	1046292	.	-	0	transcript_id "Ledus.S3G011800.t1"; gene_id "Ledus.S3G011800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12144.t1 is derived from g5763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9788926	9790578	.	-	.	Ledus.S4G130000
Ledus.S4	AUGUSTUS	transcript	9788926	9790578	.	-	.	transcript_id "Ledus.S4G130000.t1"; gene_id "Ledus.S4G130000"
Ledus.S4	AUGUSTUS	stop_codon	9788923	9788925	.	-	0	transcript_id "Ledus.S4G130000.t1"; gene_id "Ledus.S4G130000"
Ledus.S4	AUGUSTUS	CDS	9788926	9789729	1	-	0	transcript_id "Ledus.S4G130000.t1"; gene_id "Ledus.S4G130000"
Ledus.S4	AUGUSTUS	exon	9788926	9789729	.	-	.	transcript_id "Ledus.S4G130000.t1"; gene_id "Ledus.S4G130000"
Ledus.S4	AUGUSTUS	intron	9789730	9789892	.	-	.	transcript_id "Ledus.S4G130000.t1"; gene_id "Ledus.S4G130000"
Ledus.S4	AUGUSTUS	CDS	9789893	9789967	1	-	0	transcript_id "Ledus.S4G130000.t1"; gene_id "Ledus.S4G130000"
Ledus.S4	AUGUSTUS	exon	9789893	9789967	.	-	.	transcript_id "Ledus.S4G130000.t1"; gene_id "Ledus.S4G130000"
Ledus.S4	AUGUSTUS	intron	9789968	9790407	.	-	.	transcript_id "Ledus.S4G130000.t1"; gene_id "Ledus.S4G130000"
Ledus.S4	AUGUSTUS	CDS	9790408	9790578	0.99	-	0	transcript_id "Ledus.S4G130000.t1"; gene_id "Ledus.S4G130000"
Ledus.S4	AUGUSTUS	exon	9790408	9790578	.	-	.	transcript_id "Ledus.S4G130000.t1"; gene_id "Ledus.S4G130000"
Ledus.S4	AUGUSTUS	start_codon	9790576	9790578	.	-	0	transcript_id "Ledus.S4G130000.t1"; gene_id "Ledus.S4G130000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg120.t1 is derived from g6981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	28063	28482	.	+	.	Ledus.S2G000200
Ledus.S2	AUGUSTUS	transcript	28063	28482	.	+	.	transcript_id "Ledus.S2G000200.t1"; gene_id "Ledus.S2G000200"
Ledus.S2	AUGUSTUS	start_codon	28063	28065	.	+	0	transcript_id "Ledus.S2G000200.t1"; gene_id "Ledus.S2G000200"
Ledus.S2	AUGUSTUS	CDS	28063	28482	0.95	+	0	transcript_id "Ledus.S2G000200.t1"; gene_id "Ledus.S2G000200"
Ledus.S2	AUGUSTUS	exon	28063	28482	.	+	.	transcript_id "Ledus.S2G000200.t1"; gene_id "Ledus.S2G000200"
Ledus.S2	AUGUSTUS	stop_codon	28483	28485	.	+	0	transcript_id "Ledus.S2G000200.t1"; gene_id "Ledus.S2G000200"
# This transcript jg10764.t2 is derived from g11796.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10764.t3 is derived from g11796.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10765.t1 is derived from g11797.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17539889	17540509	.	-	.	Ledus.S3G224200
Ledus.S3	AUGUSTUS	transcript	17539889	17540509	.	-	.	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	stop_codon	17539886	17539888	.	-	0	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	CDS	17539889	17539924	0.99	-	0	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	exon	17539889	17539924	.	-	.	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	intron	17539925	17540089	.	-	.	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	CDS	17540090	17540099	0.79	-	1	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	exon	17540090	17540099	.	-	.	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	intron	17540100	17540174	.	-	.	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	CDS	17540175	17540181	0.72	-	2	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	exon	17540175	17540181	.	-	.	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	intron	17540182	17540349	.	-	.	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	CDS	17540350	17540509	0.24	-	0	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	exon	17540350	17540509	.	-	.	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
Ledus.S3	AUGUSTUS	start_codon	17540507	17540509	.	-	0	transcript_id "Ledus.S3G224200.t1"; gene_id "Ledus.S3G224200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10233.t1 is derived from g11263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13717948	13719246	.	+	.	Ledus.S3G171000
Ledus.S3	AUGUSTUS	transcript	13717948	13719246	.	+	.	transcript_id "Ledus.S3G171000.t1"; gene_id "Ledus.S3G171000"
Ledus.S3	AUGUSTUS	start_codon	13717948	13717950	.	+	0	transcript_id "Ledus.S3G171000.t1"; gene_id "Ledus.S3G171000"
Ledus.S3	AUGUSTUS	CDS	13717948	13719246	0.98	+	0	transcript_id "Ledus.S3G171000.t1"; gene_id "Ledus.S3G171000"
Ledus.S3	AUGUSTUS	exon	13717948	13719246	.	+	.	transcript_id "Ledus.S3G171000.t1"; gene_id "Ledus.S3G171000"
Ledus.S3	AUGUSTUS	stop_codon	13719247	13719249	.	+	0	transcript_id "Ledus.S3G171000.t1"; gene_id "Ledus.S3G171000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6627.t1 is derived from g4070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32787288	32790849	.	+	.	Ledus.S1G404800
Ledus.S1	AUGUSTUS	transcript	32787288	32790849	.	+	.	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	start_codon	32787288	32787290	.	+	0	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	CDS	32787288	32787502	1	+	0	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	exon	32787288	32787502	.	+	.	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	intron	32787503	32787591	.	+	.	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	CDS	32787592	32788253	0.95	+	1	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	exon	32787592	32788253	.	+	.	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	intron	32788254	32788330	.	+	.	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	CDS	32788331	32788561	1	+	2	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	exon	32788331	32788561	.	+	.	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	intron	32788562	32788647	.	+	.	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	CDS	32788648	32790262	0.65	+	2	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	exon	32788648	32790262	.	+	.	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	intron	32790263	32790548	.	+	.	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	CDS	32790549	32790849	0.25	+	1	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	exon	32790549	32790849	.	+	.	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
Ledus.S1	AUGUSTUS	stop_codon	32790850	32790852	.	+	0	transcript_id "Ledus.S1G404800.t1"; gene_id "Ledus.S1G404800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg649.t1 is derived from g7510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3877419	3878453	.	+	.	Ledus.S2G053100
Ledus.S2	AUGUSTUS	transcript	3877419	3878453	.	+	.	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	start_codon	3877419	3877421	.	+	0	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	CDS	3877419	3877553	0.71	+	0	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	exon	3877419	3877553	.	+	.	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	intron	3877554	3877647	.	+	.	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	CDS	3877648	3877860	0.71	+	0	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	exon	3877648	3877860	.	+	.	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	intron	3877861	3877947	.	+	.	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	CDS	3877948	3878013	0.91	+	0	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	exon	3877948	3878013	.	+	.	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	intron	3878014	3878068	.	+	.	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	CDS	3878069	3878112	0.91	+	0	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	exon	3878069	3878112	.	+	.	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	intron	3878113	3878209	.	+	.	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	CDS	3878210	3878453	0.82	+	1	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	exon	3878210	3878453	.	+	.	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
Ledus.S2	AUGUSTUS	stop_codon	3878454	3878456	.	+	0	transcript_id "Ledus.S2G053100.t1"; gene_id "Ledus.S2G053100"
# This transcript jg9148.t2 is derived from g10178.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9149.t1 is derived from g10179.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4890564	4891594	.	+	.	Ledus.S3G062600
Ledus.S3	AUGUSTUS	transcript	4890564	4891594	.	+	.	transcript_id "Ledus.S3G062600.t1"; gene_id "Ledus.S3G062600"
Ledus.S3	AUGUSTUS	start_codon	4890564	4890566	.	+	0	transcript_id "Ledus.S3G062600.t1"; gene_id "Ledus.S3G062600"
Ledus.S3	AUGUSTUS	CDS	4890564	4890609	0.83	+	0	transcript_id "Ledus.S3G062600.t1"; gene_id "Ledus.S3G062600"
Ledus.S3	AUGUSTUS	exon	4890564	4890609	.	+	.	transcript_id "Ledus.S3G062600.t1"; gene_id "Ledus.S3G062600"
Ledus.S3	AUGUSTUS	intron	4890610	4891532	.	+	.	transcript_id "Ledus.S3G062600.t1"; gene_id "Ledus.S3G062600"
Ledus.S3	AUGUSTUS	CDS	4891533	4891594	0.01	+	2	transcript_id "Ledus.S3G062600.t1"; gene_id "Ledus.S3G062600"
Ledus.S3	AUGUSTUS	exon	4891533	4891594	.	+	.	transcript_id "Ledus.S3G062600.t1"; gene_id "Ledus.S3G062600"
Ledus.S3	AUGUSTUS	stop_codon	4891595	4891597	.	+	0	transcript_id "Ledus.S3G062600.t1"; gene_id "Ledus.S3G062600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3742.t1 is derived from g1178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11478128	11478427	.	-	.	Ledus.S1G116300
Ledus.S1	AUGUSTUS	transcript	11478128	11478427	.	-	.	transcript_id "Ledus.S1G116300.t1"; gene_id "Ledus.S1G116300"
Ledus.S1	AUGUSTUS	stop_codon	11478125	11478127	.	-	0	transcript_id "Ledus.S1G116300.t1"; gene_id "Ledus.S1G116300"
Ledus.S1	AUGUSTUS	CDS	11478128	11478427	0.68	-	0	transcript_id "Ledus.S1G116300.t1"; gene_id "Ledus.S1G116300"
Ledus.S1	AUGUSTUS	exon	11478128	11478427	.	-	.	transcript_id "Ledus.S1G116300.t1"; gene_id "Ledus.S1G116300"
Ledus.S1	AUGUSTUS	start_codon	11478425	11478427	.	-	0	transcript_id "Ledus.S1G116300.t1"; gene_id "Ledus.S1G116300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10688.t1 is derived from g11718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17098862	17099198	.	-	.	Ledus.S3G216500
Ledus.S3	AUGUSTUS	transcript	17098862	17099198	.	-	.	transcript_id "Ledus.S3G216500.t1"; gene_id "Ledus.S3G216500"
Ledus.S3	AUGUSTUS	stop_codon	17098859	17098861	.	-	0	transcript_id "Ledus.S3G216500.t1"; gene_id "Ledus.S3G216500"
Ledus.S3	AUGUSTUS	CDS	17098862	17099027	0.79	-	1	transcript_id "Ledus.S3G216500.t1"; gene_id "Ledus.S3G216500"
Ledus.S3	AUGUSTUS	exon	17098862	17099027	.	-	.	transcript_id "Ledus.S3G216500.t1"; gene_id "Ledus.S3G216500"
Ledus.S3	AUGUSTUS	intron	17099028	17099133	.	-	.	transcript_id "Ledus.S3G216500.t1"; gene_id "Ledus.S3G216500"
Ledus.S3	AUGUSTUS	CDS	17099134	17099198	0.87	-	0	transcript_id "Ledus.S3G216500.t1"; gene_id "Ledus.S3G216500"
Ledus.S3	AUGUSTUS	exon	17099134	17099198	.	-	.	transcript_id "Ledus.S3G216500.t1"; gene_id "Ledus.S3G216500"
Ledus.S3	AUGUSTUS	start_codon	17099196	17099198	.	-	0	transcript_id "Ledus.S3G216500.t1"; gene_id "Ledus.S3G216500"
# This transcript jg2441.t2 is derived from g9304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2442.t1 is derived from g9305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18122554	18123605	.	+	.	Ledus.S2G232400
Ledus.S2	AUGUSTUS	transcript	18122554	18123605	.	+	.	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	start_codon	18122554	18122556	.	+	0	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	CDS	18122554	18122922	0.99	+	0	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	exon	18122554	18122922	.	+	.	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	intron	18122923	18123005	.	+	.	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	CDS	18123006	18123120	1	+	0	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	exon	18123006	18123120	.	+	.	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	intron	18123121	18123218	.	+	.	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	CDS	18123219	18123300	1	+	2	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	exon	18123219	18123300	.	+	.	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	intron	18123301	18123400	.	+	.	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	CDS	18123401	18123452	1	+	1	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	exon	18123401	18123452	.	+	.	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	intron	18123453	18123545	.	+	.	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	CDS	18123546	18123605	0.63	+	0	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	exon	18123546	18123605	.	+	.	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
Ledus.S2	AUGUSTUS	stop_codon	18123606	18123608	.	+	0	transcript_id "Ledus.S2G232400.t1"; gene_id "Ledus.S2G232400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5193.t1 is derived from g2632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22377436	22377735	.	+	.	Ledus.S1G261400
Ledus.S1	AUGUSTUS	transcript	22377436	22377735	.	+	.	transcript_id "Ledus.S1G261400.t1"; gene_id "Ledus.S1G261400"
Ledus.S1	AUGUSTUS	start_codon	22377436	22377438	.	+	0	transcript_id "Ledus.S1G261400.t1"; gene_id "Ledus.S1G261400"
Ledus.S1	AUGUSTUS	CDS	22377436	22377735	0.67	+	0	transcript_id "Ledus.S1G261400.t1"; gene_id "Ledus.S1G261400"
Ledus.S1	AUGUSTUS	exon	22377436	22377735	.	+	.	transcript_id "Ledus.S1G261400.t1"; gene_id "Ledus.S1G261400"
Ledus.S1	AUGUSTUS	stop_codon	22377736	22377738	.	+	0	transcript_id "Ledus.S1G261400.t1"; gene_id "Ledus.S1G261400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2727.t1 is derived from g161.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2568657	2570013	.	-	.	Ledus.S1G014800
Ledus.S1	AUGUSTUS	transcript	2568684	2570013	.	-	.	transcript_id "Ledus.S1G014800.t1"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	stop_codon	2568681	2568683	.	-	0	transcript_id "Ledus.S1G014800.t1"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	CDS	2568684	2568686	1	-	0	transcript_id "Ledus.S1G014800.t1"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	exon	2568684	2568686	.	-	.	transcript_id "Ledus.S1G014800.t1"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	intron	2568687	2568892	.	-	.	transcript_id "Ledus.S1G014800.t1"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	CDS	2568893	2569019	0.75	-	1	transcript_id "Ledus.S1G014800.t1"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	exon	2568893	2569019	.	-	.	transcript_id "Ledus.S1G014800.t1"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	intron	2569020	2569114	.	-	.	transcript_id "Ledus.S1G014800.t1"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	CDS	2569115	2570013	0.54	-	0	transcript_id "Ledus.S1G014800.t1"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	exon	2569115	2570013	.	-	.	transcript_id "Ledus.S1G014800.t1"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	start_codon	2570011	2570013	.	-	0	transcript_id "Ledus.S1G014800.t1"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	transcript	2568657	2570013	.	-	.	transcript_id "Ledus.S1G014800.t2"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	stop_codon	2568654	2568656	.	-	0	transcript_id "Ledus.S1G014800.t2"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	CDS	2568657	2568680	0.83	-	0	transcript_id "Ledus.S1G014800.t2"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	exon	2568657	2568680	.	-	.	transcript_id "Ledus.S1G014800.t2"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	intron	2568681	2568892	.	-	.	transcript_id "Ledus.S1G014800.t2"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	CDS	2568893	2569019	0.55	-	1	transcript_id "Ledus.S1G014800.t2"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	exon	2568893	2569019	.	-	.	transcript_id "Ledus.S1G014800.t2"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	intron	2569020	2569114	.	-	.	transcript_id "Ledus.S1G014800.t2"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	CDS	2569115	2570013	0.42	-	0	transcript_id "Ledus.S1G014800.t2"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	exon	2569115	2570013	.	-	.	transcript_id "Ledus.S1G014800.t2"; gene_id "Ledus.S1G014800"
Ledus.S1	AUGUSTUS	start_codon	2570011	2570013	.	-	0	transcript_id "Ledus.S1G014800.t2"; gene_id "Ledus.S1G014800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9142.t1 is derived from g10172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4825365	4825874	.	-	.	Ledus.S3G061900
Ledus.S3	AUGUSTUS	transcript	4825365	4825874	.	-	.	transcript_id "Ledus.S3G061900.t1"; gene_id "Ledus.S3G061900"
Ledus.S3	AUGUSTUS	stop_codon	4825362	4825364	.	-	0	transcript_id "Ledus.S3G061900.t1"; gene_id "Ledus.S3G061900"
Ledus.S3	AUGUSTUS	CDS	4825365	4825874	0.73	-	0	transcript_id "Ledus.S3G061900.t1"; gene_id "Ledus.S3G061900"
Ledus.S3	AUGUSTUS	exon	4825365	4825874	.	-	.	transcript_id "Ledus.S3G061900.t1"; gene_id "Ledus.S3G061900"
Ledus.S3	AUGUSTUS	start_codon	4825872	4825874	.	-	0	transcript_id "Ledus.S3G061900.t1"; gene_id "Ledus.S3G061900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9716.t1 is derived from g10746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9265053	9265310	.	+	.	Ledus.S3G119300
Ledus.S3	AUGUSTUS	transcript	9265053	9265310	.	+	.	transcript_id "Ledus.S3G119300.t1"; gene_id "Ledus.S3G119300"
Ledus.S3	AUGUSTUS	start_codon	9265053	9265055	.	+	0	transcript_id "Ledus.S3G119300.t1"; gene_id "Ledus.S3G119300"
Ledus.S3	AUGUSTUS	CDS	9265053	9265310	0.36	+	0	transcript_id "Ledus.S3G119300.t1"; gene_id "Ledus.S3G119300"
Ledus.S3	AUGUSTUS	exon	9265053	9265310	.	+	.	transcript_id "Ledus.S3G119300.t1"; gene_id "Ledus.S3G119300"
Ledus.S3	AUGUSTUS	stop_codon	9265311	9265313	.	+	0	transcript_id "Ledus.S3G119300.t1"; gene_id "Ledus.S3G119300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5578.t1 is derived from g3017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25234745	25237868	.	-	.	Ledus.S1G299900
Ledus.S1	AUGUSTUS	transcript	25234745	25237868	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	stop_codon	25234742	25234744	.	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25234745	25234831	0.7	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25234745	25234831	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25234832	25234927	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25234928	25234996	0.84	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25234928	25234996	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25234997	25235134	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25235135	25235194	1	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25235135	25235194	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25235195	25235304	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25235305	25235364	1	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25235305	25235364	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25235365	25235457	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25235458	25235500	1	-	1	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25235458	25235500	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25235501	25235634	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25235635	25235726	1	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25235635	25235726	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25235727	25235874	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25235875	25235943	1	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25235875	25235943	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25235944	25236040	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25236041	25236085	1	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25236041	25236085	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25236086	25236185	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25236186	25236294	1	-	1	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25236186	25236294	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25236295	25236436	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25236437	25236537	1	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25236437	25236537	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25236538	25236628	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25236629	25236721	1	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25236629	25236721	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25236722	25236815	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25236816	25236876	1	-	1	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25236816	25236876	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25236877	25237010	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25237011	25237114	1	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25237011	25237114	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25237115	25237413	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25237414	25237565	1	-	2	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25237414	25237565	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	intron	25237566	25237723	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	CDS	25237724	25237868	0.99	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	exon	25237724	25237868	.	-	.	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
Ledus.S1	AUGUSTUS	start_codon	25237866	25237868	.	-	0	transcript_id "Ledus.S1G299900.t1"; gene_id "Ledus.S1G299900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4812.t1 is derived from g2250.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19913059	19914132	.	+	.	Ledus.S1G223300
Ledus.S1	AUGUSTUS	transcript	19913059	19914132	.	+	.	transcript_id "Ledus.S1G223300.t1"; gene_id "Ledus.S1G223300"
Ledus.S1	AUGUSTUS	start_codon	19913059	19913061	.	+	0	transcript_id "Ledus.S1G223300.t1"; gene_id "Ledus.S1G223300"
Ledus.S1	AUGUSTUS	CDS	19913059	19914132	1	+	0	transcript_id "Ledus.S1G223300.t1"; gene_id "Ledus.S1G223300"
Ledus.S1	AUGUSTUS	exon	19913059	19914132	.	+	.	transcript_id "Ledus.S1G223300.t1"; gene_id "Ledus.S1G223300"
Ledus.S1	AUGUSTUS	stop_codon	19914133	19914135	.	+	0	transcript_id "Ledus.S1G223300.t1"; gene_id "Ledus.S1G223300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2357.t1 is derived from g9220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17454971	17459290	.	+	.	Ledus.S2G223900
Ledus.S2	AUGUSTUS	transcript	17454971	17459290	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	start_codon	17454971	17454973	.	+	0	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17454971	17455769	0.93	+	0	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17454971	17455769	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	intron	17455770	17455887	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17455888	17456099	0.99	+	2	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17455888	17456099	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	intron	17456100	17456354	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17456355	17456472	1	+	0	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17456355	17456472	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	intron	17456473	17456659	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17456660	17456700	1	+	2	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17456660	17456700	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	intron	17456701	17456792	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17456793	17457043	0.9	+	0	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17456793	17457043	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	intron	17457044	17457127	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17457128	17457308	1	+	1	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17457128	17457308	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	intron	17457309	17457472	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17457473	17457685	1	+	0	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17457473	17457685	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	intron	17457686	17457765	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17457766	17457939	0.99	+	0	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17457766	17457939	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	intron	17457940	17458030	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17458031	17458189	1	+	0	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17458031	17458189	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	intron	17458190	17458265	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17458266	17458343	1	+	0	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17458266	17458343	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	intron	17458344	17458510	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17458511	17458647	1	+	0	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17458511	17458647	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	intron	17458648	17458793	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17458794	17459012	1	+	1	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17458794	17459012	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	intron	17459013	17459118	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	CDS	17459119	17459290	1	+	1	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	exon	17459119	17459290	.	+	.	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
Ledus.S2	AUGUSTUS	stop_codon	17459291	17459293	.	+	0	transcript_id "Ledus.S2G223900.t1"; gene_id "Ledus.S2G223900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6941.t1 is derived from g6472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	13304	13708	.	+	.	Ledus.C7G000200
Ledus.C7	AUGUSTUS	transcript	13304	13708	.	+	.	transcript_id "Ledus.C7G000200.t1"; gene_id "Ledus.C7G000200"
Ledus.C7	AUGUSTUS	start_codon	13304	13306	.	+	0	transcript_id "Ledus.C7G000200.t1"; gene_id "Ledus.C7G000200"
Ledus.C7	AUGUSTUS	CDS	13304	13708	0.59	+	0	transcript_id "Ledus.C7G000200.t1"; gene_id "Ledus.C7G000200"
Ledus.C7	AUGUSTUS	exon	13304	13708	.	+	.	transcript_id "Ledus.C7G000200.t1"; gene_id "Ledus.C7G000200"
Ledus.C7	AUGUSTUS	stop_codon	13709	13711	.	+	0	transcript_id "Ledus.C7G000200.t1"; gene_id "Ledus.C7G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9340.t1 is derived from g10370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6213976	6214580	.	+	.	Ledus.S3G081700
Ledus.S3	AUGUSTUS	transcript	6213976	6214580	.	+	.	transcript_id "Ledus.S3G081700.t1"; gene_id "Ledus.S3G081700"
Ledus.S3	AUGUSTUS	start_codon	6213976	6213978	.	+	0	transcript_id "Ledus.S3G081700.t1"; gene_id "Ledus.S3G081700"
Ledus.S3	AUGUSTUS	CDS	6213976	6214080	0.63	+	0	transcript_id "Ledus.S3G081700.t1"; gene_id "Ledus.S3G081700"
Ledus.S3	AUGUSTUS	exon	6213976	6214080	.	+	.	transcript_id "Ledus.S3G081700.t1"; gene_id "Ledus.S3G081700"
Ledus.S3	AUGUSTUS	intron	6214081	6214421	.	+	.	transcript_id "Ledus.S3G081700.t1"; gene_id "Ledus.S3G081700"
Ledus.S3	AUGUSTUS	CDS	6214422	6214580	0.63	+	0	transcript_id "Ledus.S3G081700.t1"; gene_id "Ledus.S3G081700"
Ledus.S3	AUGUSTUS	exon	6214422	6214580	.	+	.	transcript_id "Ledus.S3G081700.t1"; gene_id "Ledus.S3G081700"
Ledus.S3	AUGUSTUS	stop_codon	6214581	6214583	.	+	0	transcript_id "Ledus.S3G081700.t1"; gene_id "Ledus.S3G081700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8379.t1 is derived from g13051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11365537	11366970	.	+	.	Ledus.S5G115700
Ledus.S5	AUGUSTUS	transcript	11365537	11366970	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	start_codon	11365537	11365539	.	+	0	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	CDS	11365537	11365737	0.86	+	0	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	exon	11365537	11365737	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	intron	11365738	11366003	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	CDS	11366004	11366062	1	+	0	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	exon	11366004	11366062	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	intron	11366063	11366212	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	CDS	11366213	11366272	1	+	1	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	exon	11366213	11366272	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	intron	11366273	11366374	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	CDS	11366375	11366444	0.98	+	1	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	exon	11366375	11366444	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	intron	11366445	11366557	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	CDS	11366558	11366627	1	+	0	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	exon	11366558	11366627	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	intron	11366628	11366774	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	CDS	11366775	11366801	1	+	2	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	exon	11366775	11366801	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	intron	11366802	11366923	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	CDS	11366924	11366970	1	+	2	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	exon	11366924	11366970	.	+	.	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
Ledus.S5	AUGUSTUS	stop_codon	11366971	11366973	.	+	0	transcript_id "Ledus.S5G115700.t1"; gene_id "Ledus.S5G115700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9421.t1 is derived from g10451.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6637289	6639565	.	+	.	Ledus.S3G089800
Ledus.S3	AUGUSTUS	transcript	6637289	6639565	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	start_codon	6637289	6637291	.	+	0	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	CDS	6637289	6637517	0.95	+	0	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	exon	6637289	6637517	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	intron	6637518	6637639	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	CDS	6637640	6637650	1	+	2	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	exon	6637640	6637650	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	intron	6637651	6637843	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	CDS	6637844	6637999	1	+	0	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	exon	6637844	6637999	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	intron	6638000	6638227	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	CDS	6638228	6638291	1	+	0	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	exon	6638228	6638291	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	intron	6638292	6638474	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	CDS	6638475	6638617	1	+	2	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	exon	6638475	6638617	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	intron	6638618	6638704	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	CDS	6638705	6638792	1	+	0	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	exon	6638705	6638792	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	intron	6638793	6638871	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	CDS	6638872	6638987	1	+	2	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	exon	6638872	6638987	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	intron	6638988	6639113	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	CDS	6639114	6639264	1	+	0	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	exon	6639114	6639264	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	intron	6639265	6639362	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	CDS	6639363	6639565	0.5	+	2	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	exon	6639363	6639565	.	+	.	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
Ledus.S3	AUGUSTUS	stop_codon	6639566	6639568	.	+	0	transcript_id "Ledus.S3G089800.t1"; gene_id "Ledus.S3G089800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11755.t1 is derived from g5374.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6574717	6575649	.	-	.	Ledus.S4G091100
Ledus.S4	AUGUSTUS	transcript	6574717	6575649	.	-	.	transcript_id "Ledus.S4G091100.t1"; gene_id "Ledus.S4G091100"
Ledus.S4	AUGUSTUS	stop_codon	6574714	6574716	.	-	0	transcript_id "Ledus.S4G091100.t1"; gene_id "Ledus.S4G091100"
Ledus.S4	AUGUSTUS	CDS	6574717	6575649	0.98	-	0	transcript_id "Ledus.S4G091100.t1"; gene_id "Ledus.S4G091100"
Ledus.S4	AUGUSTUS	exon	6574717	6575649	.	-	.	transcript_id "Ledus.S4G091100.t1"; gene_id "Ledus.S4G091100"
Ledus.S4	AUGUSTUS	start_codon	6575647	6575649	.	-	0	transcript_id "Ledus.S4G091100.t1"; gene_id "Ledus.S4G091100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11621.t1 is derived from g5239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5600053	5601147	.	+	.	Ledus.S4G077700
Ledus.S4	AUGUSTUS	transcript	5600053	5601147	.	+	.	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	start_codon	5600053	5600055	.	+	0	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	CDS	5600053	5600056	1	+	0	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	exon	5600053	5600056	.	+	.	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	intron	5600057	5600278	.	+	.	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	CDS	5600279	5600454	0.91	+	2	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	exon	5600279	5600454	.	+	.	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	intron	5600455	5600573	.	+	.	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	CDS	5600574	5600667	0.44	+	0	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	exon	5600574	5600667	.	+	.	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	intron	5600668	5600749	.	+	.	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	CDS	5600750	5600921	0.79	+	2	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	exon	5600750	5600921	.	+	.	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	intron	5600922	5601086	.	+	.	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	CDS	5601087	5601147	0.89	+	1	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	exon	5601087	5601147	.	+	.	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
Ledus.S4	AUGUSTUS	stop_codon	5601148	5601150	.	+	0	transcript_id "Ledus.S4G077700.t1"; gene_id "Ledus.S4G077700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13166.t1 is derived from g6976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7873205	7873402	.	+	.	Ledus.S6G022800
Ledus.S6	AUGUSTUS	transcript	7873205	7873402	.	+	.	transcript_id "Ledus.S6G022800.t1"; gene_id "Ledus.S6G022800"
Ledus.S6	AUGUSTUS	start_codon	7873205	7873207	.	+	0	transcript_id "Ledus.S6G022800.t1"; gene_id "Ledus.S6G022800"
Ledus.S6	AUGUSTUS	CDS	7873205	7873402	0.57	+	0	transcript_id "Ledus.S6G022800.t1"; gene_id "Ledus.S6G022800"
Ledus.S6	AUGUSTUS	exon	7873205	7873402	.	+	.	transcript_id "Ledus.S6G022800.t1"; gene_id "Ledus.S6G022800"
Ledus.S6	AUGUSTUS	stop_codon	7873403	7873405	.	+	0	transcript_id "Ledus.S6G022800.t1"; gene_id "Ledus.S6G022800"
# This transcript jg9169.t2 is derived from g10199.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9170.t1 is derived from g10200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5213101	5213627	.	+	.	Ledus.S3G064700
Ledus.S3	AUGUSTUS	transcript	5213101	5213627	.	+	.	transcript_id "Ledus.S3G064700.t1"; gene_id "Ledus.S3G064700"
Ledus.S3	AUGUSTUS	start_codon	5213101	5213103	.	+	0	transcript_id "Ledus.S3G064700.t1"; gene_id "Ledus.S3G064700"
Ledus.S3	AUGUSTUS	CDS	5213101	5213250	0.22	+	0	transcript_id "Ledus.S3G064700.t1"; gene_id "Ledus.S3G064700"
Ledus.S3	AUGUSTUS	exon	5213101	5213250	.	+	.	transcript_id "Ledus.S3G064700.t1"; gene_id "Ledus.S3G064700"
Ledus.S3	AUGUSTUS	intron	5213251	5213462	.	+	.	transcript_id "Ledus.S3G064700.t1"; gene_id "Ledus.S3G064700"
Ledus.S3	AUGUSTUS	CDS	5213463	5213627	0.75	+	0	transcript_id "Ledus.S3G064700.t1"; gene_id "Ledus.S3G064700"
Ledus.S3	AUGUSTUS	exon	5213463	5213627	.	+	.	transcript_id "Ledus.S3G064700.t1"; gene_id "Ledus.S3G064700"
Ledus.S3	AUGUSTUS	stop_codon	5213628	5213630	.	+	0	transcript_id "Ledus.S3G064700.t1"; gene_id "Ledus.S3G064700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7306.t1 is derived from g11977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	917613	918562	.	-	.	Ledus.S5G008400
Ledus.S5	AUGUSTUS	transcript	917613	918562	.	-	.	transcript_id "Ledus.S5G008400.t1"; gene_id "Ledus.S5G008400"
Ledus.S5	AUGUSTUS	stop_codon	917610	917612	.	-	0	transcript_id "Ledus.S5G008400.t1"; gene_id "Ledus.S5G008400"
Ledus.S5	AUGUSTUS	CDS	917613	917675	0.68	-	0	transcript_id "Ledus.S5G008400.t1"; gene_id "Ledus.S5G008400"
Ledus.S5	AUGUSTUS	exon	917613	917675	.	-	.	transcript_id "Ledus.S5G008400.t1"; gene_id "Ledus.S5G008400"
Ledus.S5	AUGUSTUS	intron	917676	918241	.	-	.	transcript_id "Ledus.S5G008400.t1"; gene_id "Ledus.S5G008400"
Ledus.S5	AUGUSTUS	CDS	918242	918562	0.83	-	0	transcript_id "Ledus.S5G008400.t1"; gene_id "Ledus.S5G008400"
Ledus.S5	AUGUSTUS	exon	918242	918562	.	-	.	transcript_id "Ledus.S5G008400.t1"; gene_id "Ledus.S5G008400"
Ledus.S5	AUGUSTUS	start_codon	918560	918562	.	-	0	transcript_id "Ledus.S5G008400.t1"; gene_id "Ledus.S5G008400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3769.t1 is derived from g1205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11812118	11812616	.	+	.	Ledus.S1G119000
Ledus.S1	AUGUSTUS	transcript	11812118	11812616	.	+	.	transcript_id "Ledus.S1G119000.t1"; gene_id "Ledus.S1G119000"
Ledus.S1	AUGUSTUS	start_codon	11812118	11812120	.	+	0	transcript_id "Ledus.S1G119000.t1"; gene_id "Ledus.S1G119000"
Ledus.S1	AUGUSTUS	CDS	11812118	11812270	0.91	+	0	transcript_id "Ledus.S1G119000.t1"; gene_id "Ledus.S1G119000"
Ledus.S1	AUGUSTUS	exon	11812118	11812270	.	+	.	transcript_id "Ledus.S1G119000.t1"; gene_id "Ledus.S1G119000"
Ledus.S1	AUGUSTUS	intron	11812271	11812367	.	+	.	transcript_id "Ledus.S1G119000.t1"; gene_id "Ledus.S1G119000"
Ledus.S1	AUGUSTUS	CDS	11812368	11812616	0.75	+	0	transcript_id "Ledus.S1G119000.t1"; gene_id "Ledus.S1G119000"
Ledus.S1	AUGUSTUS	exon	11812368	11812616	.	+	.	transcript_id "Ledus.S1G119000.t1"; gene_id "Ledus.S1G119000"
Ledus.S1	AUGUSTUS	stop_codon	11812617	11812619	.	+	0	transcript_id "Ledus.S1G119000.t1"; gene_id "Ledus.S1G119000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1317.t1 is derived from g8178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9231220	9239676	.	+	.	Ledus.S2G119900
Ledus.S2	AUGUSTUS	transcript	9231220	9239676	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	start_codon	9231220	9231222	.	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9231220	9231317	0.47	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9231220	9231317	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9231318	9231432	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9231433	9233452	0.89	+	1	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9231433	9233452	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9233453	9233579	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9233580	9233800	1	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9233580	9233800	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9233801	9233990	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9233991	9234027	1	+	1	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9233991	9234027	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9234028	9234130	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9234131	9234201	1	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9234131	9234201	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9234202	9234288	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9234289	9235257	0.97	+	1	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9234289	9235257	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9235258	9235338	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9235339	9235413	0.9	+	1	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9235339	9235413	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9235414	9235489	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9235490	9235577	0.51	+	1	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9235490	9235577	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9235578	9235753	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9235754	9236191	0.47	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9235754	9236191	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9236192	9236390	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9236391	9236447	0.68	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9236391	9236447	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9236448	9236608	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9236609	9236703	0.99	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9236609	9236703	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9236704	9236809	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9236810	9236966	1	+	1	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9236810	9236966	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9236967	9237051	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9237052	9237177	1	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9237052	9237177	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9237178	9237274	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9237275	9237431	1	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9237275	9237431	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9237432	9237568	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9237569	9237629	1	+	2	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9237569	9237629	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9237630	9237777	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9237778	9238054	0.99	+	1	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9237778	9238054	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9238055	9238174	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9238175	9238300	1	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9238175	9238300	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9238301	9238394	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9238395	9238553	0.88	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9238395	9238553	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9238554	9238656	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9238657	9238876	0.98	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9238657	9238876	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9238877	9238990	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9238991	9239485	1	+	2	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9238991	9239485	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9239486	9239641	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9239642	9239676	0.99	+	2	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9239642	9239676	.	+	.	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	stop_codon	9239677	9239679	.	+	0	transcript_id "Ledus.S2G119900.t1"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	transcript	9231220	9239676	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	start_codon	9231220	9231222	.	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9231220	9231317	0.46	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9231220	9231317	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9231318	9231432	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9231433	9233452	0.86	+	1	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9231433	9233452	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9233453	9233579	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9233580	9233800	1	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9233580	9233800	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9233801	9233990	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9233991	9234027	1	+	1	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9233991	9234027	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9234028	9234130	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9234131	9234201	1	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9234131	9234201	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9234202	9234291	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9234292	9235257	0.88	+	1	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9234292	9235257	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9235258	9235338	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9235339	9235413	0.89	+	1	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9235339	9235413	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9235414	9235489	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9235490	9235577	0.45	+	1	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9235490	9235577	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9235578	9235753	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9235754	9236191	0.41	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9235754	9236191	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9236192	9236390	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9236391	9236447	0.65	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9236391	9236447	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9236448	9236608	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9236609	9236703	0.96	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9236609	9236703	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9236704	9236809	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9236810	9236966	1	+	1	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9236810	9236966	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9236967	9237051	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9237052	9237177	1	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9237052	9237177	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9237178	9237274	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9237275	9237431	1	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9237275	9237431	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9237432	9237568	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9237569	9237629	1	+	2	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9237569	9237629	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9237630	9237777	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9237778	9238054	0.97	+	1	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9237778	9238054	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9238055	9238174	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9238175	9238300	1	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9238175	9238300	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9238301	9238394	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9238395	9238553	0.9	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9238395	9238553	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9238554	9238656	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9238657	9238876	0.99	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9238657	9238876	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9238877	9238990	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9238991	9239485	1	+	2	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9238991	9239485	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	intron	9239486	9239641	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	CDS	9239642	9239676	0.98	+	2	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	exon	9239642	9239676	.	+	.	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
Ledus.S2	AUGUSTUS	stop_codon	9239677	9239679	.	+	0	transcript_id "Ledus.S2G119900.t2"; gene_id "Ledus.S2G119900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6113.t1 is derived from g3556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28959721	28961334	.	+	.	Ledus.S1G353400
Ledus.S1	AUGUSTUS	transcript	28959721	28961334	.	+	.	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	start_codon	28959721	28959723	.	+	0	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	CDS	28959721	28959834	0.57	+	0	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	exon	28959721	28959834	.	+	.	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	intron	28959835	28960148	.	+	.	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	CDS	28960149	28960261	0.74	+	0	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	exon	28960149	28960261	.	+	.	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	intron	28960262	28960498	.	+	.	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	CDS	28960499	28960547	0.45	+	1	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	exon	28960499	28960547	.	+	.	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	intron	28960548	28960780	.	+	.	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	CDS	28960781	28960922	0.74	+	0	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	exon	28960781	28960922	.	+	.	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	intron	28960923	28961044	.	+	.	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	CDS	28961045	28961334	0.98	+	2	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	exon	28961045	28961334	.	+	.	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
Ledus.S1	AUGUSTUS	stop_codon	28961335	28961337	.	+	0	transcript_id "Ledus.S1G353400.t1"; gene_id "Ledus.S1G353400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1595.t1 is derived from g8456.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11204197	11205678	.	-	.	Ledus.S2G147700
Ledus.S2	AUGUSTUS	transcript	11204197	11205678	.	-	.	transcript_id "Ledus.S2G147700.t1"; gene_id "Ledus.S2G147700"
Ledus.S2	AUGUSTUS	stop_codon	11204194	11204196	.	-	0	transcript_id "Ledus.S2G147700.t1"; gene_id "Ledus.S2G147700"
Ledus.S2	AUGUSTUS	CDS	11204197	11205678	0.39	-	0	transcript_id "Ledus.S2G147700.t1"; gene_id "Ledus.S2G147700"
Ledus.S2	AUGUSTUS	exon	11204197	11205678	.	-	.	transcript_id "Ledus.S2G147700.t1"; gene_id "Ledus.S2G147700"
Ledus.S2	AUGUSTUS	start_codon	11205676	11205678	.	-	0	transcript_id "Ledus.S2G147700.t1"; gene_id "Ledus.S2G147700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8935.t1 is derived from g9965.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3313348	3314820	.	+	.	Ledus.S3G041200
Ledus.S3	AUGUSTUS	transcript	3313348	3314820	.	+	.	transcript_id "Ledus.S3G041200.t1"; gene_id "Ledus.S3G041200"
Ledus.S3	AUGUSTUS	start_codon	3313348	3313350	.	+	0	transcript_id "Ledus.S3G041200.t1"; gene_id "Ledus.S3G041200"
Ledus.S3	AUGUSTUS	CDS	3313348	3314820	0.96	+	0	transcript_id "Ledus.S3G041200.t1"; gene_id "Ledus.S3G041200"
Ledus.S3	AUGUSTUS	exon	3313348	3314820	.	+	.	transcript_id "Ledus.S3G041200.t1"; gene_id "Ledus.S3G041200"
Ledus.S3	AUGUSTUS	stop_codon	3314821	3314823	.	+	0	transcript_id "Ledus.S3G041200.t1"; gene_id "Ledus.S3G041200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12441.t1 is derived from g6062.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12020426	12021985	.	+	.	Ledus.S4G159700
Ledus.S4	AUGUSTUS	transcript	12020426	12021985	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	start_codon	12020426	12020428	.	+	0	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	CDS	12020426	12020576	0.91	+	0	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	exon	12020426	12020576	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	intron	12020577	12020750	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	CDS	12020751	12020842	1	+	2	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	exon	12020751	12020842	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	intron	12020843	12020928	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	CDS	12020929	12021007	1	+	0	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	exon	12020929	12021007	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	intron	12021008	12021096	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	CDS	12021097	12021191	0.92	+	2	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	exon	12021097	12021191	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	intron	12021192	12021307	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	CDS	12021308	12021403	0.74	+	0	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	exon	12021308	12021403	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	intron	12021404	12021502	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	CDS	12021503	12021565	1	+	0	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	exon	12021503	12021565	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	intron	12021566	12021698	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	CDS	12021699	12021728	0.83	+	0	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	exon	12021699	12021728	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	intron	12021729	12021777	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	CDS	12021778	12021797	0.48	+	0	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	exon	12021778	12021797	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	intron	12021798	12021933	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	CDS	12021934	12021985	0.64	+	1	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	exon	12021934	12021985	.	+	.	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
Ledus.S4	AUGUSTUS	stop_codon	12021986	12021988	.	+	0	transcript_id "Ledus.S4G159700.t1"; gene_id "Ledus.S4G159700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1704.t1 is derived from g8565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11984616	11985439	.	-	.	Ledus.S2G158600
Ledus.S2	AUGUSTUS	transcript	11984616	11985439	.	-	.	transcript_id "Ledus.S2G158600.t1"; gene_id "Ledus.S2G158600"
Ledus.S2	AUGUSTUS	stop_codon	11984613	11984615	.	-	0	transcript_id "Ledus.S2G158600.t1"; gene_id "Ledus.S2G158600"
Ledus.S2	AUGUSTUS	CDS	11984616	11984634	0.38	-	1	transcript_id "Ledus.S2G158600.t1"; gene_id "Ledus.S2G158600"
Ledus.S2	AUGUSTUS	exon	11984616	11984634	.	-	.	transcript_id "Ledus.S2G158600.t1"; gene_id "Ledus.S2G158600"
Ledus.S2	AUGUSTUS	intron	11984635	11984753	.	-	.	transcript_id "Ledus.S2G158600.t1"; gene_id "Ledus.S2G158600"
Ledus.S2	AUGUSTUS	CDS	11984754	11985439	0.46	-	0	transcript_id "Ledus.S2G158600.t1"; gene_id "Ledus.S2G158600"
Ledus.S2	AUGUSTUS	exon	11984754	11985439	.	-	.	transcript_id "Ledus.S2G158600.t1"; gene_id "Ledus.S2G158600"
Ledus.S2	AUGUSTUS	start_codon	11985437	11985439	.	-	0	transcript_id "Ledus.S2G158600.t1"; gene_id "Ledus.S2G158600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2223.t1 is derived from g9086.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16156246	16156771	.	+	.	Ledus.S2G210500
Ledus.S2	AUGUSTUS	transcript	16156246	16156771	.	+	.	transcript_id "Ledus.S2G210500.t1"; gene_id "Ledus.S2G210500"
Ledus.S2	AUGUSTUS	start_codon	16156246	16156248	.	+	0	transcript_id "Ledus.S2G210500.t1"; gene_id "Ledus.S2G210500"
Ledus.S2	AUGUSTUS	CDS	16156246	16156409	0.31	+	0	transcript_id "Ledus.S2G210500.t1"; gene_id "Ledus.S2G210500"
Ledus.S2	AUGUSTUS	exon	16156246	16156409	.	+	.	transcript_id "Ledus.S2G210500.t1"; gene_id "Ledus.S2G210500"
Ledus.S2	AUGUSTUS	intron	16156410	16156517	.	+	.	transcript_id "Ledus.S2G210500.t1"; gene_id "Ledus.S2G210500"
Ledus.S2	AUGUSTUS	CDS	16156518	16156580	0.22	+	1	transcript_id "Ledus.S2G210500.t1"; gene_id "Ledus.S2G210500"
Ledus.S2	AUGUSTUS	exon	16156518	16156580	.	+	.	transcript_id "Ledus.S2G210500.t1"; gene_id "Ledus.S2G210500"
Ledus.S2	AUGUSTUS	intron	16156581	16156770	.	+	.	transcript_id "Ledus.S2G210500.t1"; gene_id "Ledus.S2G210500"
Ledus.S2	AUGUSTUS	CDS	16156771	16156771	0.39	+	1	transcript_id "Ledus.S2G210500.t1"; gene_id "Ledus.S2G210500"
Ledus.S2	AUGUSTUS	exon	16156771	16156771	.	+	.	transcript_id "Ledus.S2G210500.t1"; gene_id "Ledus.S2G210500"
Ledus.S2	AUGUSTUS	stop_codon	16156772	16156774	.	+	0	transcript_id "Ledus.S2G210500.t1"; gene_id "Ledus.S2G210500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8430.t1 is derived from g13102.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11587633	11588935	.	-	.	Ledus.S5G120800
Ledus.S5	AUGUSTUS	transcript	11587633	11588935	.	-	.	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	stop_codon	11587630	11587632	.	-	0	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	CDS	11587633	11587864	0.73	-	1	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	exon	11587633	11587864	.	-	.	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	intron	11587865	11587949	.	-	.	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	CDS	11587950	11588024	0.98	-	1	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	exon	11587950	11588024	.	-	.	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	intron	11588025	11588104	.	-	.	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	CDS	11588105	11588364	0.67	-	0	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	exon	11588105	11588364	.	-	.	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	intron	11588365	11588581	.	-	.	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	CDS	11588582	11588935	0.41	-	0	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	exon	11588582	11588935	.	-	.	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
Ledus.S5	AUGUSTUS	start_codon	11588933	11588935	.	-	0	transcript_id "Ledus.S5G120800.t1"; gene_id "Ledus.S5G120800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11516.t1 is derived from g5134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5013525	5014229	.	+	.	Ledus.S4G067200
Ledus.S4	AUGUSTUS	transcript	5013525	5014229	.	+	.	transcript_id "Ledus.S4G067200.t1"; gene_id "Ledus.S4G067200"
Ledus.S4	AUGUSTUS	start_codon	5013525	5013527	.	+	0	transcript_id "Ledus.S4G067200.t1"; gene_id "Ledus.S4G067200"
Ledus.S4	AUGUSTUS	CDS	5013525	5013567	0.37	+	0	transcript_id "Ledus.S4G067200.t1"; gene_id "Ledus.S4G067200"
Ledus.S4	AUGUSTUS	exon	5013525	5013567	.	+	.	transcript_id "Ledus.S4G067200.t1"; gene_id "Ledus.S4G067200"
Ledus.S4	AUGUSTUS	intron	5013568	5013927	.	+	.	transcript_id "Ledus.S4G067200.t1"; gene_id "Ledus.S4G067200"
Ledus.S4	AUGUSTUS	CDS	5013928	5013977	0.63	+	2	transcript_id "Ledus.S4G067200.t1"; gene_id "Ledus.S4G067200"
Ledus.S4	AUGUSTUS	exon	5013928	5013977	.	+	.	transcript_id "Ledus.S4G067200.t1"; gene_id "Ledus.S4G067200"
Ledus.S4	AUGUSTUS	intron	5013978	5014082	.	+	.	transcript_id "Ledus.S4G067200.t1"; gene_id "Ledus.S4G067200"
Ledus.S4	AUGUSTUS	CDS	5014083	5014229	0.36	+	0	transcript_id "Ledus.S4G067200.t1"; gene_id "Ledus.S4G067200"
Ledus.S4	AUGUSTUS	exon	5014083	5014229	.	+	.	transcript_id "Ledus.S4G067200.t1"; gene_id "Ledus.S4G067200"
Ledus.S4	AUGUSTUS	stop_codon	5014230	5014232	.	+	0	transcript_id "Ledus.S4G067200.t1"; gene_id "Ledus.S4G067200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4034.t1 is derived from g1470.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14268992	14269729	.	-	.	Ledus.S1G145500
Ledus.S1	AUGUSTUS	transcript	14268992	14269729	.	-	.	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	stop_codon	14268989	14268991	.	-	0	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	CDS	14268992	14269063	0.45	-	0	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	exon	14268992	14269063	.	-	.	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	intron	14269064	14269252	.	-	.	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	CDS	14269253	14269448	0.75	-	1	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	exon	14269253	14269448	.	-	.	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	intron	14269449	14269536	.	-	.	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	CDS	14269537	14269622	1	-	0	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	exon	14269537	14269622	.	-	.	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	intron	14269623	14269720	.	-	.	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	CDS	14269721	14269729	0.99	-	0	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	exon	14269721	14269729	.	-	.	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
Ledus.S1	AUGUSTUS	start_codon	14269727	14269729	.	-	0	transcript_id "Ledus.S1G145500.t1"; gene_id "Ledus.S1G145500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5234.t1 is derived from g2673.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22619412	22619883	.	+	.	Ledus.S1G265500
Ledus.S1	AUGUSTUS	transcript	22619412	22619883	.	+	.	transcript_id "Ledus.S1G265500.t1"; gene_id "Ledus.S1G265500"
Ledus.S1	AUGUSTUS	start_codon	22619412	22619414	.	+	0	transcript_id "Ledus.S1G265500.t1"; gene_id "Ledus.S1G265500"
Ledus.S1	AUGUSTUS	CDS	22619412	22619730	0.79	+	0	transcript_id "Ledus.S1G265500.t1"; gene_id "Ledus.S1G265500"
Ledus.S1	AUGUSTUS	exon	22619412	22619730	.	+	.	transcript_id "Ledus.S1G265500.t1"; gene_id "Ledus.S1G265500"
Ledus.S1	AUGUSTUS	intron	22619731	22619824	.	+	.	transcript_id "Ledus.S1G265500.t1"; gene_id "Ledus.S1G265500"
Ledus.S1	AUGUSTUS	CDS	22619825	22619883	0.71	+	2	transcript_id "Ledus.S1G265500.t1"; gene_id "Ledus.S1G265500"
Ledus.S1	AUGUSTUS	exon	22619825	22619883	.	+	.	transcript_id "Ledus.S1G265500.t1"; gene_id "Ledus.S1G265500"
Ledus.S1	AUGUSTUS	stop_codon	22619884	22619886	.	+	0	transcript_id "Ledus.S1G265500.t1"; gene_id "Ledus.S1G265500"
# This transcript jg12932.t2 is derived from g4424.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg12933.t1 is derived from g4425.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	413167	419190	.	+	.	Ledus.C9G004100
Ledus.C9	AUGUSTUS	transcript	413167	419190	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	start_codon	413167	413169	.	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	413167	414074	0.65	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	413167	414074	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	414075	414164	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	414165	414273	1	+	1	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	414165	414273	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	414274	414345	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	414346	414594	1	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	414346	414594	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	414595	414673	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	414674	414804	1	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	414674	414804	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	414805	414881	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	414882	416120	1	+	1	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	414882	416120	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	416121	416214	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	416215	416359	0.97	+	1	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	416215	416359	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	416360	416467	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	416468	416692	0.98	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	416468	416692	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	416693	416822	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	416823	417129	1	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	416823	417129	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417130	417273	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417274	417398	1	+	2	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417274	417398	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417399	417562	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417563	417685	1	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417563	417685	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417686	417774	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417775	417906	1	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417775	417906	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417907	417972	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417973	418095	1	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417973	418095	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	418096	418184	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	418185	418295	1	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	418185	418295	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	418296	418477	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	418478	418621	1	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	418478	418621	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	418622	418742	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	418743	418874	1	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	418743	418874	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	418875	418938	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	418939	419055	1	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	418939	419055	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	419056	419175	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	419176	419190	1	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	419176	419190	.	+	.	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	stop_codon	419191	419193	.	+	0	transcript_id "Ledus.C9G004100.t1"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	transcript	413167	419190	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	start_codon	413167	413169	.	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	413167	414074	0.43	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	413167	414074	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	414075	414164	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	414165	414273	1	+	1	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	414165	414273	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	414274	414345	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	414346	414594	1	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	414346	414594	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	414595	414673	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	414674	414804	1	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	414674	414804	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	414805	414881	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	414882	416120	0.99	+	1	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	414882	416120	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	416121	416214	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	416215	416359	0.96	+	1	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	416215	416359	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	416360	416467	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	416468	416692	0.96	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	416468	416692	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	416693	416822	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	416823	417129	1	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	416823	417129	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417130	417273	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417274	417398	1	+	2	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417274	417398	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417399	417562	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417563	417685	1	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417563	417685	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417686	417774	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417775	417900	1	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417775	417900	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417901	417972	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417973	418095	1	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417973	418095	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	418096	418184	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	418185	418295	1	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	418185	418295	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	418296	418477	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	418478	418621	1	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	418478	418621	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	418622	418742	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	418743	418874	1	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	418743	418874	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	418875	418938	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	418939	419055	1	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	418939	419055	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	419056	419175	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	419176	419190	1	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	419176	419190	.	+	.	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	stop_codon	419191	419193	.	+	0	transcript_id "Ledus.C9G004100.t2"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	transcript	413167	419190	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	start_codon	413167	413169	.	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	413167	414074	0.46	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	413167	414074	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	414075	414164	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	414165	414273	1	+	1	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	414165	414273	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	414274	414345	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	414346	414594	1	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	414346	414594	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	414595	414673	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	414674	414804	1	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	414674	414804	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	414805	414881	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	414882	416120	0.99	+	1	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	414882	416120	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	416121	416214	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	416215	416359	0.95	+	1	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	416215	416359	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	416360	416467	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	416468	416692	0.95	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	416468	416692	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	416693	416822	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	416823	417129	1	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	416823	417129	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417130	417273	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417274	417311	0.95	+	2	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417274	417311	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417312	417382	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417383	417398	0.92	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417383	417398	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417399	417569	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417570	417685	0.93	+	2	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417570	417685	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417686	417774	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417775	417906	1	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417775	417906	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	417907	417972	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	417973	418095	1	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	417973	418095	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	418096	418184	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	418185	418295	1	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	418185	418295	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	418296	418477	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	418478	418621	1	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	418478	418621	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	418622	418742	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	418743	418874	1	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	418743	418874	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	418875	418938	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	418939	419055	1	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	418939	419055	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	intron	419056	419175	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	CDS	419176	419190	1	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	exon	419176	419190	.	+	.	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
Ledus.C9	AUGUSTUS	stop_codon	419191	419193	.	+	0	transcript_id "Ledus.C9G004100.t3"; gene_id "Ledus.C9G004100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2611.t1 is derived from g44.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	438954	440410	.	+	.	Ledus.S1G003200
Ledus.S1	AUGUSTUS	transcript	438954	440410	.	+	.	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	start_codon	438954	438956	.	+	0	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	CDS	438954	439241	0.42	+	0	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	exon	438954	439241	.	+	.	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	intron	439242	439312	.	+	.	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	CDS	439313	439470	0.72	+	0	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	exon	439313	439470	.	+	.	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	intron	439471	439686	.	+	.	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	CDS	439687	439741	0.94	+	1	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	exon	439687	439741	.	+	.	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	intron	439742	439901	.	+	.	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	CDS	439902	439974	0.94	+	0	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	exon	439902	439974	.	+	.	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	intron	439975	440149	.	+	.	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	CDS	440150	440225	0.56	+	2	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	exon	440150	440225	.	+	.	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	intron	440226	440322	.	+	.	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	CDS	440323	440410	0.46	+	1	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	exon	440323	440410	.	+	.	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
Ledus.S1	AUGUSTUS	stop_codon	440411	440413	.	+	0	transcript_id "Ledus.S1G003200.t1"; gene_id "Ledus.S1G003200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6678.t1 is derived from g4121.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33157915	33159763	.	-	.	Ledus.S1G409900
Ledus.S1	AUGUSTUS	transcript	33157915	33159763	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	stop_codon	33157912	33157914	.	-	0	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	CDS	33157915	33157921	1	-	1	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	exon	33157915	33157921	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	intron	33157922	33157994	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	CDS	33157995	33158108	1	-	1	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	exon	33157995	33158108	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	intron	33158109	33158188	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	CDS	33158189	33158340	1	-	0	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	exon	33158189	33158340	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	intron	33158341	33158435	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	CDS	33158436	33158591	1	-	0	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	exon	33158436	33158591	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	intron	33158592	33158675	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	CDS	33158676	33158955	1	-	1	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	exon	33158676	33158955	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	intron	33158956	33159099	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	CDS	33159100	33159216	1	-	1	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	exon	33159100	33159216	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	intron	33159217	33159363	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	CDS	33159364	33159426	1	-	1	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	exon	33159364	33159426	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	intron	33159427	33159551	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	CDS	33159552	33159763	0.48	-	0	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	exon	33159552	33159763	.	-	.	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
Ledus.S1	AUGUSTUS	start_codon	33159761	33159763	.	-	0	transcript_id "Ledus.S1G409900.t1"; gene_id "Ledus.S1G409900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4131.t1 is derived from g1567.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14872235	14874027	.	+	.	Ledus.S1G155200
Ledus.S1	AUGUSTUS	transcript	14872235	14874027	.	+	.	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	start_codon	14872235	14872237	.	+	0	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	CDS	14872235	14872439	1	+	0	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	exon	14872235	14872439	.	+	.	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	intron	14872440	14872518	.	+	.	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	CDS	14872519	14872668	1	+	2	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	exon	14872519	14872668	.	+	.	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	intron	14872669	14872897	.	+	.	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	CDS	14872898	14873079	1	+	2	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	exon	14872898	14873079	.	+	.	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	intron	14873080	14873168	.	+	.	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	CDS	14873169	14873344	1	+	0	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	exon	14873169	14873344	.	+	.	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	intron	14873345	14873451	.	+	.	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	CDS	14873452	14873662	1	+	1	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	exon	14873452	14873662	.	+	.	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	intron	14873663	14873820	.	+	.	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	CDS	14873821	14874027	1	+	0	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	exon	14873821	14874027	.	+	.	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
Ledus.S1	AUGUSTUS	stop_codon	14874028	14874030	.	+	0	transcript_id "Ledus.S1G155200.t1"; gene_id "Ledus.S1G155200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1558.t1 is derived from g8419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10928392	10930372	.	+	.	Ledus.S2G144000
Ledus.S2	AUGUSTUS	transcript	10928392	10930372	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	start_codon	10928392	10928394	.	+	0	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	CDS	10928392	10928405	0.6	+	0	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	exon	10928392	10928405	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	intron	10928406	10928551	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	CDS	10928552	10928792	1	+	1	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	exon	10928552	10928792	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	intron	10928793	10929116	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	CDS	10929117	10929191	1	+	0	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	exon	10929117	10929191	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	intron	10929192	10929431	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	CDS	10929432	10929506	1	+	0	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	exon	10929432	10929506	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	intron	10929507	10929631	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	CDS	10929632	10929712	1	+	0	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	exon	10929632	10929712	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	intron	10929713	10929809	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	CDS	10929810	10929902	1	+	0	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	exon	10929810	10929902	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	intron	10929903	10930042	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	CDS	10930043	10930216	1	+	0	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	exon	10930043	10930216	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	intron	10930217	10930330	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	CDS	10930331	10930372	0.91	+	0	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	exon	10930331	10930372	.	+	.	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
Ledus.S2	AUGUSTUS	stop_codon	10930373	10930375	.	+	0	transcript_id "Ledus.S2G144000.t1"; gene_id "Ledus.S2G144000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1387.t1 is derived from g8248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9726243	9728312	.	-	.	Ledus.S2G126900
Ledus.S2	AUGUSTUS	transcript	9726243	9728312	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	stop_codon	9726240	9726242	.	-	0	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	CDS	9726243	9726537	1	-	1	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	exon	9726243	9726537	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	intron	9726538	9726674	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	CDS	9726675	9726766	1	-	0	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	exon	9726675	9726766	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	intron	9726767	9726883	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	CDS	9726884	9726911	0.98	-	1	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	exon	9726884	9726911	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	intron	9726912	9727087	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	CDS	9727088	9727127	1	-	2	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	exon	9727088	9727127	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	intron	9727128	9727227	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	CDS	9727228	9727289	1	-	1	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	exon	9727228	9727289	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	intron	9727290	9727454	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	CDS	9727455	9727518	1	-	2	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	exon	9727455	9727518	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	intron	9727519	9727683	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	CDS	9727684	9727722	1	-	2	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	exon	9727684	9727722	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	intron	9727723	9727828	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	CDS	9727829	9727883	1	-	0	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	exon	9727829	9727883	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	intron	9727884	9728255	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	CDS	9728256	9728312	1	-	0	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	exon	9728256	9728312	.	-	.	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
Ledus.S2	AUGUSTUS	start_codon	9728310	9728312	.	-	0	transcript_id "Ledus.S2G126900.t1"; gene_id "Ledus.S2G126900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10811.t1 is derived from g11843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17883597	17884304	.	-	.	Ledus.S3G228800
Ledus.S3	AUGUSTUS	transcript	17883597	17884304	.	-	.	transcript_id "Ledus.S3G228800.t1"; gene_id "Ledus.S3G228800"
Ledus.S3	AUGUSTUS	stop_codon	17883594	17883596	.	-	0	transcript_id "Ledus.S3G228800.t1"; gene_id "Ledus.S3G228800"
Ledus.S3	AUGUSTUS	CDS	17883597	17884304	1	-	0	transcript_id "Ledus.S3G228800.t1"; gene_id "Ledus.S3G228800"
Ledus.S3	AUGUSTUS	exon	17883597	17884304	.	-	.	transcript_id "Ledus.S3G228800.t1"; gene_id "Ledus.S3G228800"
Ledus.S3	AUGUSTUS	start_codon	17884302	17884304	.	-	0	transcript_id "Ledus.S3G228800.t1"; gene_id "Ledus.S3G228800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg343.t1 is derived from g7204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1832600	1833199	.	+	.	Ledus.S2G022500
Ledus.S2	AUGUSTUS	transcript	1832600	1833199	.	+	.	transcript_id "Ledus.S2G022500.t1"; gene_id "Ledus.S2G022500"
Ledus.S2	AUGUSTUS	start_codon	1832600	1832602	.	+	0	transcript_id "Ledus.S2G022500.t1"; gene_id "Ledus.S2G022500"
Ledus.S2	AUGUSTUS	CDS	1832600	1832773	0.96	+	0	transcript_id "Ledus.S2G022500.t1"; gene_id "Ledus.S2G022500"
Ledus.S2	AUGUSTUS	exon	1832600	1832773	.	+	.	transcript_id "Ledus.S2G022500.t1"; gene_id "Ledus.S2G022500"
Ledus.S2	AUGUSTUS	intron	1832774	1833010	.	+	.	transcript_id "Ledus.S2G022500.t1"; gene_id "Ledus.S2G022500"
Ledus.S2	AUGUSTUS	CDS	1833011	1833199	1	+	0	transcript_id "Ledus.S2G022500.t1"; gene_id "Ledus.S2G022500"
Ledus.S2	AUGUSTUS	exon	1833011	1833199	.	+	.	transcript_id "Ledus.S2G022500.t1"; gene_id "Ledus.S2G022500"
Ledus.S2	AUGUSTUS	stop_codon	1833200	1833202	.	+	0	transcript_id "Ledus.S2G022500.t1"; gene_id "Ledus.S2G022500"
# This transcript jg524.t2 is derived from g7385.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg525.t1 is derived from g7386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3047110	3048624	.	-	.	Ledus.S2G040700
Ledus.S2	AUGUSTUS	transcript	3047110	3048624	.	-	.	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	stop_codon	3047107	3047109	.	-	0	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	CDS	3047110	3047113	0.95	-	1	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	exon	3047110	3047113	.	-	.	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	intron	3047114	3047202	.	-	.	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	CDS	3047203	3047262	0.95	-	1	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	exon	3047203	3047262	.	-	.	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	intron	3047263	3047352	.	-	.	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	CDS	3047353	3047805	0.6	-	1	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	exon	3047353	3047805	.	-	.	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	intron	3047806	3047937	.	-	.	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	CDS	3047938	3048233	0.99	-	0	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	exon	3047938	3048233	.	-	.	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	intron	3048234	3048318	.	-	.	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	CDS	3048319	3048624	0.95	-	0	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	exon	3048319	3048624	.	-	.	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
Ledus.S2	AUGUSTUS	start_codon	3048622	3048624	.	-	0	transcript_id "Ledus.S2G040700.t1"; gene_id "Ledus.S2G040700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11202.t1 is derived from g4820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2696562	2699352	.	+	.	Ledus.S4G035800
Ledus.S4	AUGUSTUS	transcript	2696562	2699352	.	+	.	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	start_codon	2696562	2696564	.	+	0	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	CDS	2696562	2696661	0.8	+	0	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	exon	2696562	2696661	.	+	.	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	intron	2696662	2696840	.	+	.	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	CDS	2696841	2697035	0.44	+	2	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	exon	2696841	2697035	.	+	.	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	intron	2697036	2697226	.	+	.	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	CDS	2697227	2697358	0.39	+	2	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	exon	2697227	2697358	.	+	.	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	intron	2697359	2697452	.	+	.	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	CDS	2697453	2697653	0.87	+	2	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	exon	2697453	2697653	.	+	.	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	intron	2697654	2697973	.	+	.	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	CDS	2697974	2698956	0.99	+	2	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	exon	2697974	2698956	.	+	.	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	intron	2698957	2699100	.	+	.	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	CDS	2699101	2699352	0.93	+	0	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	exon	2699101	2699352	.	+	.	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
Ledus.S4	AUGUSTUS	stop_codon	2699353	2699355	.	+	0	transcript_id "Ledus.S4G035800.t1"; gene_id "Ledus.S4G035800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10354.t1 is derived from g11384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14371855	14372829	.	+	.	Ledus.S3G183100
Ledus.S3	AUGUSTUS	transcript	14371855	14372829	.	+	.	transcript_id "Ledus.S3G183100.t1"; gene_id "Ledus.S3G183100"
Ledus.S3	AUGUSTUS	start_codon	14371855	14371857	.	+	0	transcript_id "Ledus.S3G183100.t1"; gene_id "Ledus.S3G183100"
Ledus.S3	AUGUSTUS	CDS	14371855	14372829	0.94	+	0	transcript_id "Ledus.S3G183100.t1"; gene_id "Ledus.S3G183100"
Ledus.S3	AUGUSTUS	exon	14371855	14372829	.	+	.	transcript_id "Ledus.S3G183100.t1"; gene_id "Ledus.S3G183100"
Ledus.S3	AUGUSTUS	stop_codon	14372830	14372832	.	+	0	transcript_id "Ledus.S3G183100.t1"; gene_id "Ledus.S3G183100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7941.t1 is derived from g12612.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7993488	7996548	.	+	.	Ledus.S5G071900
Ledus.S5	AUGUSTUS	transcript	7993488	7996548	.	+	.	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	start_codon	7993488	7993490	.	+	0	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	CDS	7993488	7993628	0.99	+	0	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	exon	7993488	7993628	.	+	.	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	intron	7993629	7993796	.	+	.	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	CDS	7993797	7994420	1	+	0	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	exon	7993797	7994420	.	+	.	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	intron	7994421	7994607	.	+	.	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	CDS	7994608	7994926	1	+	0	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	exon	7994608	7994926	.	+	.	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	intron	7994927	7995010	.	+	.	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	CDS	7995011	7995477	1	+	2	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	exon	7995011	7995477	.	+	.	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	intron	7995478	7995585	.	+	.	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	CDS	7995586	7995620	1	+	0	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	exon	7995586	7995620	.	+	.	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	intron	7995621	7995734	.	+	.	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	CDS	7995735	7996548	0.99	+	1	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	exon	7995735	7996548	.	+	.	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
Ledus.S5	AUGUSTUS	stop_codon	7996549	7996551	.	+	0	transcript_id "Ledus.S5G071900.t1"; gene_id "Ledus.S5G071900"
# This transcript jg472.t2 is derived from g7334.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg473.t1 is derived from g7333.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2765728	2766862	.	-	.	Ledus.S2G035400
Ledus.S2	AUGUSTUS	transcript	2765728	2766862	.	-	.	transcript_id "Ledus.S2G035400.t1"; gene_id "Ledus.S2G035400"
Ledus.S2	AUGUSTUS	stop_codon	2765725	2765727	.	-	0	transcript_id "Ledus.S2G035400.t1"; gene_id "Ledus.S2G035400"
Ledus.S2	AUGUSTUS	CDS	2765728	2766609	0.51	-	0	transcript_id "Ledus.S2G035400.t1"; gene_id "Ledus.S2G035400"
Ledus.S2	AUGUSTUS	exon	2765728	2766609	.	-	.	transcript_id "Ledus.S2G035400.t1"; gene_id "Ledus.S2G035400"
Ledus.S2	AUGUSTUS	intron	2766610	2766691	.	-	.	transcript_id "Ledus.S2G035400.t1"; gene_id "Ledus.S2G035400"
Ledus.S2	AUGUSTUS	CDS	2766692	2766862	0.51	-	0	transcript_id "Ledus.S2G035400.t1"; gene_id "Ledus.S2G035400"
Ledus.S2	AUGUSTUS	exon	2766692	2766862	.	-	.	transcript_id "Ledus.S2G035400.t1"; gene_id "Ledus.S2G035400"
Ledus.S2	AUGUSTUS	start_codon	2766860	2766862	.	-	0	transcript_id "Ledus.S2G035400.t1"; gene_id "Ledus.S2G035400"
Ledus.S2	AUGUSTUS	transcript	2765728	2766645	.	-	.	transcript_id "Ledus.S2G035400.t2"; gene_id "Ledus.S2G035400"
Ledus.S2	AUGUSTUS	stop_codon	2765725	2765727	.	-	0	transcript_id "Ledus.S2G035400.t2"; gene_id "Ledus.S2G035400"
Ledus.S2	AUGUSTUS	CDS	2765728	2766645	1	-	0	transcript_id "Ledus.S2G035400.t2"; gene_id "Ledus.S2G035400"
Ledus.S2	AUGUSTUS	exon	2765728	2766645	.	-	.	transcript_id "Ledus.S2G035400.t2"; gene_id "Ledus.S2G035400"
Ledus.S2	AUGUSTUS	start_codon	2766643	2766645	.	-	0	transcript_id "Ledus.S2G035400.t2"; gene_id "Ledus.S2G035400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5659.t1 is derived from g3098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25677475	25679163	.	-	.	Ledus.S1G308000
Ledus.S1	AUGUSTUS	transcript	25677475	25679163	.	-	.	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	stop_codon	25677472	25677474	.	-	0	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	CDS	25677475	25677625	0.49	-	1	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	exon	25677475	25677625	.	-	.	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	intron	25677626	25677733	.	-	.	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	CDS	25677734	25677798	0.99	-	0	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	exon	25677734	25677798	.	-	.	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	intron	25677799	25677976	.	-	.	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	CDS	25677977	25678078	1	-	0	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	exon	25677977	25678078	.	-	.	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	intron	25678079	25678174	.	-	.	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	CDS	25678175	25678381	0.97	-	0	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	exon	25678175	25678381	.	-	.	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	intron	25678382	25678495	.	-	.	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	CDS	25678496	25678831	0.9	-	0	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	exon	25678496	25678831	.	-	.	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	intron	25678832	25678953	.	-	.	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	CDS	25678954	25679163	0.96	-	0	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	exon	25678954	25679163	.	-	.	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
Ledus.S1	AUGUSTUS	start_codon	25679161	25679163	.	-	0	transcript_id "Ledus.S1G308000.t1"; gene_id "Ledus.S1G308000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2469.t1 is derived from g9332.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18351631	18352139	.	+	.	Ledus.S2G235100
Ledus.S2	AUGUSTUS	transcript	18351631	18352139	.	+	.	transcript_id "Ledus.S2G235100.t1"; gene_id "Ledus.S2G235100"
Ledus.S2	AUGUSTUS	start_codon	18351631	18351633	.	+	0	transcript_id "Ledus.S2G235100.t1"; gene_id "Ledus.S2G235100"
Ledus.S2	AUGUSTUS	CDS	18351631	18351847	0.79	+	0	transcript_id "Ledus.S2G235100.t1"; gene_id "Ledus.S2G235100"
Ledus.S2	AUGUSTUS	exon	18351631	18351847	.	+	.	transcript_id "Ledus.S2G235100.t1"; gene_id "Ledus.S2G235100"
Ledus.S2	AUGUSTUS	intron	18351848	18352011	.	+	.	transcript_id "Ledus.S2G235100.t1"; gene_id "Ledus.S2G235100"
Ledus.S2	AUGUSTUS	CDS	18352012	18352139	0.76	+	2	transcript_id "Ledus.S2G235100.t1"; gene_id "Ledus.S2G235100"
Ledus.S2	AUGUSTUS	exon	18352012	18352139	.	+	.	transcript_id "Ledus.S2G235100.t1"; gene_id "Ledus.S2G235100"
Ledus.S2	AUGUSTUS	stop_codon	18352140	18352142	.	+	0	transcript_id "Ledus.S2G235100.t1"; gene_id "Ledus.S2G235100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6414.t1 is derived from g3857.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31143646	31144413	.	+	.	Ledus.S1G383500
Ledus.S1	AUGUSTUS	transcript	31143646	31144413	.	+	.	transcript_id "Ledus.S1G383500.t1"; gene_id "Ledus.S1G383500"
Ledus.S1	AUGUSTUS	start_codon	31143646	31143648	.	+	0	transcript_id "Ledus.S1G383500.t1"; gene_id "Ledus.S1G383500"
Ledus.S1	AUGUSTUS	CDS	31143646	31144413	0.96	+	0	transcript_id "Ledus.S1G383500.t1"; gene_id "Ledus.S1G383500"
Ledus.S1	AUGUSTUS	exon	31143646	31144413	.	+	.	transcript_id "Ledus.S1G383500.t1"; gene_id "Ledus.S1G383500"
Ledus.S1	AUGUSTUS	stop_codon	31144414	31144416	.	+	0	transcript_id "Ledus.S1G383500.t1"; gene_id "Ledus.S1G383500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12294.t1 is derived from g5914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11079800	11081606	.	-	.	Ledus.S4G145000
Ledus.S4	AUGUSTUS	transcript	11079800	11081606	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	stop_codon	11079797	11079799	.	-	0	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	CDS	11079800	11079992	1	-	1	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	exon	11079800	11079992	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	intron	11079993	11080091	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	CDS	11080092	11080159	1	-	0	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	exon	11080092	11080159	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	intron	11080160	11080257	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	CDS	11080258	11080386	1	-	0	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	exon	11080258	11080386	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	intron	11080387	11080480	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	CDS	11080481	11080614	1	-	2	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	exon	11080481	11080614	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	intron	11080615	11080713	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	CDS	11080714	11080845	1	-	2	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	exon	11080714	11080845	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	intron	11080846	11080942	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	CDS	11080943	11081099	1	-	0	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	exon	11080943	11081099	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	intron	11081100	11081201	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	CDS	11081202	11081411	0.96	-	0	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	exon	11081202	11081411	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	intron	11081412	11081537	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	CDS	11081538	11081606	1	-	0	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	exon	11081538	11081606	.	-	.	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
Ledus.S4	AUGUSTUS	start_codon	11081604	11081606	.	-	0	transcript_id "Ledus.S4G145000.t1"; gene_id "Ledus.S4G145000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9013.t1 is derived from g10043.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3874165	3876182	.	-	.	Ledus.S3G049000
Ledus.S3	AUGUSTUS	transcript	3874165	3876182	.	-	.	transcript_id "Ledus.S3G049000.t1"; gene_id "Ledus.S3G049000"
Ledus.S3	AUGUSTUS	stop_codon	3874162	3874164	.	-	0	transcript_id "Ledus.S3G049000.t1"; gene_id "Ledus.S3G049000"
Ledus.S3	AUGUSTUS	CDS	3874165	3875782	0.77	-	1	transcript_id "Ledus.S3G049000.t1"; gene_id "Ledus.S3G049000"
Ledus.S3	AUGUSTUS	exon	3874165	3875782	.	-	.	transcript_id "Ledus.S3G049000.t1"; gene_id "Ledus.S3G049000"
Ledus.S3	AUGUSTUS	intron	3875783	3875868	.	-	.	transcript_id "Ledus.S3G049000.t1"; gene_id "Ledus.S3G049000"
Ledus.S3	AUGUSTUS	CDS	3875869	3876182	0.75	-	0	transcript_id "Ledus.S3G049000.t1"; gene_id "Ledus.S3G049000"
Ledus.S3	AUGUSTUS	exon	3875869	3876182	.	-	.	transcript_id "Ledus.S3G049000.t1"; gene_id "Ledus.S3G049000"
Ledus.S3	AUGUSTUS	start_codon	3876180	3876182	.	-	0	transcript_id "Ledus.S3G049000.t1"; gene_id "Ledus.S3G049000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10816.t1 is derived from g11848.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18019359	18020746	.	-	.	Ledus.S3G229300
Ledus.S3	AUGUSTUS	transcript	18019359	18020746	.	-	.	transcript_id "Ledus.S3G229300.t1"; gene_id "Ledus.S3G229300"
Ledus.S3	AUGUSTUS	stop_codon	18019356	18019358	.	-	0	transcript_id "Ledus.S3G229300.t1"; gene_id "Ledus.S3G229300"
Ledus.S3	AUGUSTUS	CDS	18019359	18020213	1	-	0	transcript_id "Ledus.S3G229300.t1"; gene_id "Ledus.S3G229300"
Ledus.S3	AUGUSTUS	exon	18019359	18020213	.	-	.	transcript_id "Ledus.S3G229300.t1"; gene_id "Ledus.S3G229300"
Ledus.S3	AUGUSTUS	intron	18020214	18020287	.	-	.	transcript_id "Ledus.S3G229300.t1"; gene_id "Ledus.S3G229300"
Ledus.S3	AUGUSTUS	CDS	18020288	18020746	0.96	-	0	transcript_id "Ledus.S3G229300.t1"; gene_id "Ledus.S3G229300"
Ledus.S3	AUGUSTUS	exon	18020288	18020746	.	-	.	transcript_id "Ledus.S3G229300.t1"; gene_id "Ledus.S3G229300"
Ledus.S3	AUGUSTUS	start_codon	18020744	18020746	.	-	0	transcript_id "Ledus.S3G229300.t1"; gene_id "Ledus.S3G229300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4610.t1 is derived from g2047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18170910	18173546	.	+	.	Ledus.S1G203100
Ledus.S1	AUGUSTUS	transcript	18170910	18173546	.	+	.	transcript_id "Ledus.S1G203100.t1"; gene_id "Ledus.S1G203100"
Ledus.S1	AUGUSTUS	start_codon	18170910	18170912	.	+	0	transcript_id "Ledus.S1G203100.t1"; gene_id "Ledus.S1G203100"
Ledus.S1	AUGUSTUS	CDS	18170910	18173546	0.87	+	0	transcript_id "Ledus.S1G203100.t1"; gene_id "Ledus.S1G203100"
Ledus.S1	AUGUSTUS	exon	18170910	18173546	.	+	.	transcript_id "Ledus.S1G203100.t1"; gene_id "Ledus.S1G203100"
Ledus.S1	AUGUSTUS	stop_codon	18173547	18173549	.	+	0	transcript_id "Ledus.S1G203100.t1"; gene_id "Ledus.S1G203100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5029.t1 is derived from g2468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21206096	21208173	.	-	.	Ledus.S1G245000
Ledus.S1	AUGUSTUS	transcript	21206096	21208173	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	stop_codon	21206093	21206095	.	-	0	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	CDS	21206096	21206155	0.93	-	0	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	exon	21206096	21206155	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	intron	21206156	21206358	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	CDS	21206359	21206375	0.95	-	2	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	exon	21206359	21206375	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	intron	21206376	21206470	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	CDS	21206471	21206652	0.68	-	1	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	exon	21206471	21206652	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	intron	21206653	21206874	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	CDS	21206875	21207119	0.85	-	0	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	exon	21206875	21207119	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	intron	21207120	21207234	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	CDS	21207235	21207309	0.75	-	0	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	exon	21207235	21207309	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	intron	21207310	21207401	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	CDS	21207402	21207430	1	-	2	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	exon	21207402	21207430	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	intron	21207431	21207656	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	CDS	21207657	21208173	0.72	-	0	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	exon	21207657	21208173	.	-	.	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
Ledus.S1	AUGUSTUS	start_codon	21208171	21208173	.	-	0	transcript_id "Ledus.S1G245000.t1"; gene_id "Ledus.S1G245000"
# This transcript jg5438.t2 is derived from g2877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5439.t1 is derived from g2878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24216998	24217494	.	+	.	Ledus.S1G286000
Ledus.S1	AUGUSTUS	transcript	24216998	24217494	.	+	.	transcript_id "Ledus.S1G286000.t1"; gene_id "Ledus.S1G286000"
Ledus.S1	AUGUSTUS	start_codon	24216998	24217000	.	+	0	transcript_id "Ledus.S1G286000.t1"; gene_id "Ledus.S1G286000"
Ledus.S1	AUGUSTUS	CDS	24216998	24217207	0.9	+	0	transcript_id "Ledus.S1G286000.t1"; gene_id "Ledus.S1G286000"
Ledus.S1	AUGUSTUS	exon	24216998	24217207	.	+	.	transcript_id "Ledus.S1G286000.t1"; gene_id "Ledus.S1G286000"
Ledus.S1	AUGUSTUS	intron	24217208	24217398	.	+	.	transcript_id "Ledus.S1G286000.t1"; gene_id "Ledus.S1G286000"
Ledus.S1	AUGUSTUS	CDS	24217399	24217494	0.9	+	0	transcript_id "Ledus.S1G286000.t1"; gene_id "Ledus.S1G286000"
Ledus.S1	AUGUSTUS	exon	24217399	24217494	.	+	.	transcript_id "Ledus.S1G286000.t1"; gene_id "Ledus.S1G286000"
Ledus.S1	AUGUSTUS	stop_codon	24217495	24217497	.	+	0	transcript_id "Ledus.S1G286000.t1"; gene_id "Ledus.S1G286000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2119.t1 is derived from g8982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14807163	14808633	.	+	.	Ledus.S2G200100
Ledus.S2	AUGUSTUS	transcript	14807163	14808633	.	+	.	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	start_codon	14807163	14807165	.	+	0	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	CDS	14807163	14807501	0.57	+	0	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	exon	14807163	14807501	.	+	.	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	intron	14807502	14807617	.	+	.	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	CDS	14807618	14807704	0.84	+	0	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	exon	14807618	14807704	.	+	.	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	intron	14807705	14807821	.	+	.	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	CDS	14807822	14807899	1	+	0	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	exon	14807822	14807899	.	+	.	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	intron	14807900	14807989	.	+	.	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	CDS	14807990	14808178	1	+	0	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	exon	14807990	14808178	.	+	.	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	intron	14808179	14808258	.	+	.	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	CDS	14808259	14808372	1	+	0	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	exon	14808259	14808372	.	+	.	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	intron	14808373	14808453	.	+	.	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	CDS	14808454	14808633	1	+	0	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	exon	14808454	14808633	.	+	.	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
Ledus.S2	AUGUSTUS	stop_codon	14808634	14808636	.	+	0	transcript_id "Ledus.S2G200100.t1"; gene_id "Ledus.S2G200100"
# This transcript jg12494.t2 is derived from g6115.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12495.t1 is derived from g6116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12381415	12382261	.	+	.	Ledus.S4G165100
Ledus.S4	AUGUSTUS	transcript	12381415	12382261	.	+	.	transcript_id "Ledus.S4G165100.t1"; gene_id "Ledus.S4G165100"
Ledus.S4	AUGUSTUS	start_codon	12381415	12381417	.	+	0	transcript_id "Ledus.S4G165100.t1"; gene_id "Ledus.S4G165100"
Ledus.S4	AUGUSTUS	CDS	12381415	12381710	0.41	+	0	transcript_id "Ledus.S4G165100.t1"; gene_id "Ledus.S4G165100"
Ledus.S4	AUGUSTUS	exon	12381415	12381710	.	+	.	transcript_id "Ledus.S4G165100.t1"; gene_id "Ledus.S4G165100"
Ledus.S4	AUGUSTUS	intron	12381711	12381793	.	+	.	transcript_id "Ledus.S4G165100.t1"; gene_id "Ledus.S4G165100"
Ledus.S4	AUGUSTUS	CDS	12381794	12381914	1	+	1	transcript_id "Ledus.S4G165100.t1"; gene_id "Ledus.S4G165100"
Ledus.S4	AUGUSTUS	exon	12381794	12381914	.	+	.	transcript_id "Ledus.S4G165100.t1"; gene_id "Ledus.S4G165100"
Ledus.S4	AUGUSTUS	intron	12381915	12381982	.	+	.	transcript_id "Ledus.S4G165100.t1"; gene_id "Ledus.S4G165100"
Ledus.S4	AUGUSTUS	CDS	12381983	12382261	0.98	+	0	transcript_id "Ledus.S4G165100.t1"; gene_id "Ledus.S4G165100"
Ledus.S4	AUGUSTUS	exon	12381983	12382261	.	+	.	transcript_id "Ledus.S4G165100.t1"; gene_id "Ledus.S4G165100"
Ledus.S4	AUGUSTUS	stop_codon	12382262	12382264	.	+	0	transcript_id "Ledus.S4G165100.t1"; gene_id "Ledus.S4G165100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6542.t1 is derived from g3985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32225927	32227878	.	-	.	Ledus.S1G396300
Ledus.S1	AUGUSTUS	transcript	32225927	32227878	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	stop_codon	32225924	32225926	.	-	0	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	CDS	32225927	32226020	1	-	1	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	exon	32225927	32226020	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	intron	32226021	32226163	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	CDS	32226164	32226231	1	-	0	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	exon	32226164	32226231	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	intron	32226232	32226312	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	CDS	32226313	32226489	1	-	0	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	exon	32226313	32226489	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	intron	32226490	32226603	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	CDS	32226604	32226756	1	-	0	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	exon	32226604	32226756	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	intron	32226757	32226820	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	CDS	32226821	32226904	1	-	0	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	exon	32226821	32226904	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	intron	32226905	32227003	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	CDS	32227004	32227086	1	-	2	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	exon	32227004	32227086	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	intron	32227087	32227184	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	CDS	32227185	32227248	1	-	0	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	exon	32227185	32227248	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	intron	32227249	32227334	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	CDS	32227335	32227596	1	-	1	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	exon	32227335	32227596	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	intron	32227597	32227708	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	CDS	32227709	32227878	0.93	-	0	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	exon	32227709	32227878	.	-	.	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
Ledus.S1	AUGUSTUS	start_codon	32227876	32227878	.	-	0	transcript_id "Ledus.S1G396300.t1"; gene_id "Ledus.S1G396300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4496.t1 is derived from g1932.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17367244	17368365	.	+	.	Ledus.S1G191700
Ledus.S1	AUGUSTUS	transcript	17367244	17368365	.	+	.	transcript_id "Ledus.S1G191700.t1"; gene_id "Ledus.S1G191700"
Ledus.S1	AUGUSTUS	start_codon	17367244	17367246	.	+	0	transcript_id "Ledus.S1G191700.t1"; gene_id "Ledus.S1G191700"
Ledus.S1	AUGUSTUS	CDS	17367244	17367492	0.86	+	0	transcript_id "Ledus.S1G191700.t1"; gene_id "Ledus.S1G191700"
Ledus.S1	AUGUSTUS	exon	17367244	17367492	.	+	.	transcript_id "Ledus.S1G191700.t1"; gene_id "Ledus.S1G191700"
Ledus.S1	AUGUSTUS	intron	17367493	17367669	.	+	.	transcript_id "Ledus.S1G191700.t1"; gene_id "Ledus.S1G191700"
Ledus.S1	AUGUSTUS	CDS	17367670	17368365	0.97	+	0	transcript_id "Ledus.S1G191700.t1"; gene_id "Ledus.S1G191700"
Ledus.S1	AUGUSTUS	exon	17367670	17368365	.	+	.	transcript_id "Ledus.S1G191700.t1"; gene_id "Ledus.S1G191700"
Ledus.S1	AUGUSTUS	stop_codon	17368366	17368368	.	+	0	transcript_id "Ledus.S1G191700.t1"; gene_id "Ledus.S1G191700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2644.t1 is derived from g77.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1123041	1126785	.	+	.	Ledus.S1G006500
Ledus.S1	AUGUSTUS	transcript	1123041	1126785	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	start_codon	1123041	1123043	.	+	0	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1123041	1123169	0.94	+	0	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1123041	1123169	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1123170	1123254	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1123255	1123363	1	+	0	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1123255	1123363	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1123364	1123446	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1123447	1123508	1	+	2	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1123447	1123508	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1123509	1123589	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1123590	1123799	1	+	0	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1123590	1123799	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1123800	1123938	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1123939	1124026	1	+	0	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1123939	1124026	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1124027	1124152	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1124153	1124315	1	+	2	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1124153	1124315	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1124316	1124468	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1124469	1124667	0.9	+	1	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1124469	1124667	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1124668	1124983	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1124984	1125130	0.71	+	0	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1124984	1125130	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1125131	1125292	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1125293	1125424	1	+	0	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1125293	1125424	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1125425	1125559	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1125560	1125680	1	+	0	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1125560	1125680	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1125681	1125826	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1125827	1125937	1	+	2	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1125827	1125937	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1125938	1126027	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1126028	1126097	1	+	2	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1126028	1126097	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1126098	1126291	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1126292	1126475	1	+	1	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1126292	1126475	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	intron	1126476	1126566	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	CDS	1126567	1126785	0.99	+	0	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	exon	1126567	1126785	.	+	.	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
Ledus.S1	AUGUSTUS	stop_codon	1126786	1126788	.	+	0	transcript_id "Ledus.S1G006500.t1"; gene_id "Ledus.S1G006500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9586.t1 is derived from g10616.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8103407	8103862	.	+	.	Ledus.S3G106300
Ledus.S3	AUGUSTUS	transcript	8103407	8103862	.	+	.	transcript_id "Ledus.S3G106300.t1"; gene_id "Ledus.S3G106300"
Ledus.S3	AUGUSTUS	start_codon	8103407	8103409	.	+	0	transcript_id "Ledus.S3G106300.t1"; gene_id "Ledus.S3G106300"
Ledus.S3	AUGUSTUS	CDS	8103407	8103862	0.43	+	0	transcript_id "Ledus.S3G106300.t1"; gene_id "Ledus.S3G106300"
Ledus.S3	AUGUSTUS	exon	8103407	8103862	.	+	.	transcript_id "Ledus.S3G106300.t1"; gene_id "Ledus.S3G106300"
Ledus.S3	AUGUSTUS	stop_codon	8103863	8103865	.	+	0	transcript_id "Ledus.S3G106300.t1"; gene_id "Ledus.S3G106300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5083.t1 is derived from g2522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21485797	21487089	.	+	.	Ledus.S1G250400
Ledus.S1	AUGUSTUS	transcript	21485797	21487089	.	+	.	transcript_id "Ledus.S1G250400.t1"; gene_id "Ledus.S1G250400"
Ledus.S1	AUGUSTUS	start_codon	21485797	21485799	.	+	0	transcript_id "Ledus.S1G250400.t1"; gene_id "Ledus.S1G250400"
Ledus.S1	AUGUSTUS	CDS	21485797	21487089	0.78	+	0	transcript_id "Ledus.S1G250400.t1"; gene_id "Ledus.S1G250400"
Ledus.S1	AUGUSTUS	exon	21485797	21487089	.	+	.	transcript_id "Ledus.S1G250400.t1"; gene_id "Ledus.S1G250400"
Ledus.S1	AUGUSTUS	stop_codon	21487090	21487092	.	+	0	transcript_id "Ledus.S1G250400.t1"; gene_id "Ledus.S1G250400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2751.t1 is derived from g185.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3107059	3107577	.	+	.	Ledus.S1G017200
Ledus.S1	AUGUSTUS	transcript	3107059	3107577	.	+	.	transcript_id "Ledus.S1G017200.t1"; gene_id "Ledus.S1G017200"
Ledus.S1	AUGUSTUS	start_codon	3107059	3107061	.	+	0	transcript_id "Ledus.S1G017200.t1"; gene_id "Ledus.S1G017200"
Ledus.S1	AUGUSTUS	CDS	3107059	3107577	0.59	+	0	transcript_id "Ledus.S1G017200.t1"; gene_id "Ledus.S1G017200"
Ledus.S1	AUGUSTUS	exon	3107059	3107577	.	+	.	transcript_id "Ledus.S1G017200.t1"; gene_id "Ledus.S1G017200"
Ledus.S1	AUGUSTUS	stop_codon	3107578	3107580	.	+	0	transcript_id "Ledus.S1G017200.t1"; gene_id "Ledus.S1G017200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10167.t1 is derived from g11197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13429569	13431190	.	-	.	Ledus.S3G164400
Ledus.S3	AUGUSTUS	transcript	13429569	13431190	.	-	.	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	stop_codon	13429566	13429568	.	-	0	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	CDS	13429569	13429844	0.86	-	0	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	exon	13429569	13429844	.	-	.	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	intron	13429845	13429923	.	-	.	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	CDS	13429924	13430193	1	-	0	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	exon	13429924	13430193	.	-	.	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	intron	13430194	13430274	.	-	.	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	CDS	13430275	13430365	1	-	1	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	exon	13430275	13430365	.	-	.	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	intron	13430366	13430458	.	-	.	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	CDS	13430459	13430568	1	-	0	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	exon	13430459	13430568	.	-	.	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	intron	13430569	13430654	.	-	.	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	CDS	13430655	13430924	1	-	0	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	exon	13430655	13430924	.	-	.	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	intron	13430925	13431016	.	-	.	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	CDS	13431017	13431190	0.85	-	0	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	exon	13431017	13431190	.	-	.	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
Ledus.S3	AUGUSTUS	start_codon	13431188	13431190	.	-	0	transcript_id "Ledus.S3G164400.t1"; gene_id "Ledus.S3G164400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg14.t1 is derived from g10.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C18	AUGUSTUS	gene	53728	53979	.	+	.	Ledus.C18G000100
Ledus.C18	AUGUSTUS	transcript	53728	53979	.	+	.	transcript_id "Ledus.C18G000100.t1"; gene_id "Ledus.C18G000100"
Ledus.C18	AUGUSTUS	start_codon	53728	53730	.	+	0	transcript_id "Ledus.C18G000100.t1"; gene_id "Ledus.C18G000100"
Ledus.C18	AUGUSTUS	CDS	53728	53979	0.49	+	0	transcript_id "Ledus.C18G000100.t1"; gene_id "Ledus.C18G000100"
Ledus.C18	AUGUSTUS	exon	53728	53979	.	+	.	transcript_id "Ledus.C18G000100.t1"; gene_id "Ledus.C18G000100"
Ledus.C18	AUGUSTUS	stop_codon	53980	53982	.	+	0	transcript_id "Ledus.C18G000100.t1"; gene_id "Ledus.C18G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7685.t1 is derived from g12356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5175859	5176764	.	-	.	Ledus.S5G046300
Ledus.S5	AUGUSTUS	transcript	5175859	5176764	.	-	.	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	stop_codon	5175856	5175858	.	-	0	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	CDS	5175859	5175905	0.46	-	2	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	exon	5175859	5175905	.	-	.	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	intron	5175906	5175985	.	-	.	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	CDS	5175986	5176099	0.82	-	2	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	exon	5175986	5176099	.	-	.	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	intron	5176100	5176167	.	-	.	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	CDS	5176168	5176397	0.42	-	1	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	exon	5176168	5176397	.	-	.	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	intron	5176398	5176594	.	-	.	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	CDS	5176595	5176764	0.53	-	0	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	exon	5176595	5176764	.	-	.	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
Ledus.S5	AUGUSTUS	start_codon	5176762	5176764	.	-	0	transcript_id "Ledus.S5G046300.t1"; gene_id "Ledus.S5G046300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11734.t1 is derived from g5353.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6400654	6401184	.	+	.	Ledus.S4G089000
Ledus.S4	AUGUSTUS	transcript	6400654	6401184	.	+	.	transcript_id "Ledus.S4G089000.t1"; gene_id "Ledus.S4G089000"
Ledus.S4	AUGUSTUS	start_codon	6400654	6400656	.	+	0	transcript_id "Ledus.S4G089000.t1"; gene_id "Ledus.S4G089000"
Ledus.S4	AUGUSTUS	CDS	6400654	6401184	0.96	+	0	transcript_id "Ledus.S4G089000.t1"; gene_id "Ledus.S4G089000"
Ledus.S4	AUGUSTUS	exon	6400654	6401184	.	+	.	transcript_id "Ledus.S4G089000.t1"; gene_id "Ledus.S4G089000"
Ledus.S4	AUGUSTUS	stop_codon	6401185	6401187	.	+	0	transcript_id "Ledus.S4G089000.t1"; gene_id "Ledus.S4G089000"
# This transcript jg9132.t2 is derived from g10162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9133.t1 is derived from g10163.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4741448	4742054	.	-	.	Ledus.S3G061000
Ledus.S3	AUGUSTUS	transcript	4741448	4742054	.	-	.	transcript_id "Ledus.S3G061000.t1"; gene_id "Ledus.S3G061000"
Ledus.S3	AUGUSTUS	stop_codon	4741445	4741447	.	-	0	transcript_id "Ledus.S3G061000.t1"; gene_id "Ledus.S3G061000"
Ledus.S3	AUGUSTUS	CDS	4741448	4741968	0.89	-	2	transcript_id "Ledus.S3G061000.t1"; gene_id "Ledus.S3G061000"
Ledus.S3	AUGUSTUS	exon	4741448	4741968	.	-	.	transcript_id "Ledus.S3G061000.t1"; gene_id "Ledus.S3G061000"
Ledus.S3	AUGUSTUS	intron	4741969	4742044	.	-	.	transcript_id "Ledus.S3G061000.t1"; gene_id "Ledus.S3G061000"
Ledus.S3	AUGUSTUS	CDS	4742045	4742054	0.42	-	0	transcript_id "Ledus.S3G061000.t1"; gene_id "Ledus.S3G061000"
Ledus.S3	AUGUSTUS	exon	4742045	4742054	.	-	.	transcript_id "Ledus.S3G061000.t1"; gene_id "Ledus.S3G061000"
Ledus.S3	AUGUSTUS	start_codon	4742052	4742054	.	-	0	transcript_id "Ledus.S3G061000.t1"; gene_id "Ledus.S3G061000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10476.t1 is derived from g11506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15499944	15501711	.	-	.	Ledus.S3G195300
Ledus.S3	AUGUSTUS	transcript	15499944	15501711	.	-	.	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	stop_codon	15499941	15499943	.	-	0	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	CDS	15499944	15500796	1	-	1	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	exon	15499944	15500796	.	-	.	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	intron	15500797	15500931	.	-	.	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	CDS	15500932	15500987	1	-	0	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	exon	15500932	15500987	.	-	.	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	intron	15500988	15501103	.	-	.	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	CDS	15501104	15501181	0.78	-	0	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	exon	15501104	15501181	.	-	.	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	intron	15501182	15501306	.	-	.	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	CDS	15501307	15501380	0.97	-	2	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	exon	15501307	15501380	.	-	.	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	intron	15501381	15501563	.	-	.	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	CDS	15501564	15501711	0.98	-	0	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	exon	15501564	15501711	.	-	.	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
Ledus.S3	AUGUSTUS	start_codon	15501709	15501711	.	-	0	transcript_id "Ledus.S3G195300.t1"; gene_id "Ledus.S3G195300"
# This transcript jg12451.t2 is derived from g6072.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12452.t1 is derived from g6073.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12080021	12081152	.	-	.	Ledus.S4G160800
Ledus.S4	AUGUSTUS	transcript	12080021	12081152	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	stop_codon	12080018	12080020	.	-	0	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080021	12080104	0.98	-	0	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080021	12080104	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12080105	12080190	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080191	12080238	1	-	0	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080191	12080238	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12080239	12080323	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080324	12080380	1	-	0	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080324	12080380	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12080381	12080475	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080476	12080565	1	-	0	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080476	12080565	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12080566	12080651	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080652	12080701	1	-	2	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080652	12080701	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12080702	12080779	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080780	12080826	1	-	1	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080780	12080826	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12080827	12080915	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080916	12081013	1	-	0	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080916	12081013	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12081014	12081101	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12081102	12081152	0.86	-	0	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12081102	12081152	.	-	.	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	start_codon	12081150	12081152	.	-	0	transcript_id "Ledus.S4G160800.t1"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	transcript	12080067	12081152	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	stop_codon	12080064	12080066	.	-	0	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080067	12080114	1	-	0	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080067	12080114	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12080115	12080190	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080191	12080238	1	-	0	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080191	12080238	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12080239	12080323	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080324	12080380	1	-	0	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080324	12080380	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12080381	12080475	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080476	12080565	1	-	0	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080476	12080565	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12080566	12080651	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080652	12080701	1	-	2	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080652	12080701	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12080702	12080779	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080780	12080826	1	-	1	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080780	12080826	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12080827	12080915	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12080916	12081013	1	-	0	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12080916	12081013	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	intron	12081014	12081101	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	CDS	12081102	12081152	0.8	-	0	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	exon	12081102	12081152	.	-	.	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
Ledus.S4	AUGUSTUS	start_codon	12081150	12081152	.	-	0	transcript_id "Ledus.S4G160800.t2"; gene_id "Ledus.S4G160800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8921.t1 is derived from g9951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3161490	3163132	.	+	.	Ledus.S3G039800
Ledus.S3	AUGUSTUS	transcript	3161490	3163132	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	start_codon	3161490	3161492	.	+	0	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	CDS	3161490	3161579	1	+	0	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	exon	3161490	3161579	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	intron	3161580	3161644	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	CDS	3161645	3161757	1	+	0	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	exon	3161645	3161757	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	intron	3161758	3161830	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	CDS	3161831	3161978	1	+	1	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	exon	3161831	3161978	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	intron	3161979	3162060	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	CDS	3162061	3162239	1	+	0	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	exon	3162061	3162239	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	intron	3162240	3162322	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	CDS	3162323	3162362	1	+	1	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	exon	3162323	3162362	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	intron	3162363	3162441	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	CDS	3162442	3162588	1	+	0	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	exon	3162442	3162588	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	intron	3162589	3162671	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	CDS	3162672	3162791	1	+	0	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	exon	3162672	3162791	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	intron	3162792	3162874	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	CDS	3162875	3162940	1	+	0	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	exon	3162875	3162940	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	intron	3162941	3163033	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	CDS	3163034	3163132	1	+	0	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	exon	3163034	3163132	.	+	.	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
Ledus.S3	AUGUSTUS	stop_codon	3163133	3163135	.	+	0	transcript_id "Ledus.S3G039800.t1"; gene_id "Ledus.S3G039800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5017.t1 is derived from g2455.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21141780	21142931	.	-	.	Ledus.S1G243800
Ledus.S1	AUGUSTUS	transcript	21141780	21142931	.	-	.	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	stop_codon	21141777	21141779	.	-	0	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	CDS	21141780	21141921	0.72	-	1	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	exon	21141780	21141921	.	-	.	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	intron	21141922	21142028	.	-	.	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	CDS	21142029	21142170	0.91	-	2	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	exon	21142029	21142170	.	-	.	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	intron	21142171	21142261	.	-	.	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	CDS	21142262	21142403	0.96	-	0	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	exon	21142262	21142403	.	-	.	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	intron	21142404	21142495	.	-	.	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	CDS	21142496	21142651	0.93	-	0	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	exon	21142496	21142651	.	-	.	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	intron	21142652	21142739	.	-	.	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	CDS	21142740	21142931	0.97	-	0	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	exon	21142740	21142931	.	-	.	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
Ledus.S1	AUGUSTUS	start_codon	21142929	21142931	.	-	0	transcript_id "Ledus.S1G243800.t1"; gene_id "Ledus.S1G243800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4263.t1 is derived from g1699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15812758	15815452	.	-	.	Ledus.S1G168400
Ledus.S1	AUGUSTUS	transcript	15812758	15815452	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	stop_codon	15812755	15812757	.	-	0	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	CDS	15812758	15812944	0.99	-	1	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	exon	15812758	15812944	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	intron	15812945	15813057	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	CDS	15813058	15813126	1	-	1	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	exon	15813058	15813126	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	intron	15813127	15813203	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	CDS	15813204	15813354	1	-	2	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	exon	15813204	15813354	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	intron	15813355	15813450	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	CDS	15813451	15813539	1	-	1	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	exon	15813451	15813539	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	intron	15813540	15813780	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	CDS	15813781	15813914	1	-	0	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	exon	15813781	15813914	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	intron	15813915	15814000	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	CDS	15814001	15814088	0.99	-	1	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	exon	15814001	15814088	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	intron	15814089	15814201	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	CDS	15814202	15814243	0.99	-	1	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	exon	15814202	15814243	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	intron	15814244	15814335	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	CDS	15814336	15814556	1	-	0	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	exon	15814336	15814556	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	intron	15814557	15814659	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	CDS	15814660	15814767	1	-	0	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	exon	15814660	15814767	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	intron	15814768	15814855	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	CDS	15814856	15814998	1	-	2	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	exon	15814856	15814998	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	intron	15814999	15815109	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	CDS	15815110	15815452	0.49	-	0	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	exon	15815110	15815452	.	-	.	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
Ledus.S1	AUGUSTUS	start_codon	15815450	15815452	.	-	0	transcript_id "Ledus.S1G168400.t1"; gene_id "Ledus.S1G168400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg1956.t1 is derived from g8819.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13809408	13815419	.	-	.	Ledus.S2G183800
Ledus.S2	AUGUSTUS	transcript	13809408	13815419	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	stop_codon	13809405	13809407	.	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13809408	13809420	1	-	1	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13809408	13809420	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13809421	13809598	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13809599	13809679	1	-	1	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13809599	13809679	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13809680	13810005	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13810006	13810307	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13810006	13810307	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13810308	13810849	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13810850	13810949	0.85	-	1	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13810850	13810949	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13810950	13811061	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811062	13811114	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811062	13811114	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811115	13811189	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811190	13811336	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811190	13811336	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811337	13811433	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811434	13811576	1	-	2	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811434	13811576	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811577	13811737	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811738	13811789	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811738	13811789	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811790	13811938	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811939	13812052	0.99	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811939	13812052	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812053	13812264	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812265	13812351	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812265	13812351	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812352	13812440	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812441	13812578	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812441	13812578	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812579	13812735	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812736	13812828	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812736	13812828	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812829	13812907	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812908	13813000	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812908	13813000	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813001	13813100	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813101	13813210	1	-	2	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813101	13813210	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813211	13813306	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813307	13813355	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813307	13813355	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813356	13813484	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813485	13813598	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813485	13813598	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813599	13813686	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813687	13813746	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813687	13813746	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813747	13813934	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813935	13814003	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813935	13814003	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814004	13814131	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13814132	13814233	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13814132	13814233	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814234	13814322	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13814323	13814351	1	-	2	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13814323	13814351	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814352	13814581	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13814582	13814864	1	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13814582	13814864	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814865	13815008	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13815009	13815419	0.97	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13815009	13815419	.	-	.	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	start_codon	13815417	13815419	.	-	0	transcript_id "Ledus.S2G183800.t1"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	transcript	13809408	13815419	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	stop_codon	13809405	13809407	.	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13809408	13809420	1	-	1	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13809408	13809420	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13809421	13809598	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13809599	13809679	1	-	1	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13809599	13809679	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13809680	13810005	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13810006	13810307	0.98	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13810006	13810307	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13810308	13810849	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13810850	13810949	0.82	-	1	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13810850	13810949	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13810950	13811061	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811062	13811114	1	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811062	13811114	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811115	13811189	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811190	13811336	1	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811190	13811336	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811337	13811433	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811434	13811576	1	-	2	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811434	13811576	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811577	13811737	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811738	13811789	1	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811738	13811789	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811790	13811938	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811939	13812052	0.99	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811939	13812052	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812053	13812237	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812238	13812351	1	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812238	13812351	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812352	13812440	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812441	13812578	1	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812441	13812578	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812579	13812735	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812736	13812828	1	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812736	13812828	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812829	13812907	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812908	13813000	1	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812908	13813000	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813001	13813100	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813101	13813210	1	-	2	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813101	13813210	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813211	13813306	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813307	13813355	1	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813307	13813355	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813356	13813484	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813485	13813598	1	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813485	13813598	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813599	13813686	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813687	13813746	1	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813687	13813746	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813747	13813934	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813935	13814003	1	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813935	13814003	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814004	13814131	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13814132	13814233	1	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13814132	13814233	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814234	13814322	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13814323	13814351	1	-	2	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13814323	13814351	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814352	13814581	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13814582	13814864	0.99	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13814582	13814864	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814865	13815008	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13815009	13815419	0.97	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13815009	13815419	.	-	.	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	start_codon	13815417	13815419	.	-	0	transcript_id "Ledus.S2G183800.t2"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	transcript	13809408	13815419	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	stop_codon	13809405	13809407	.	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13809408	13809420	1	-	1	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13809408	13809420	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13809421	13809598	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13809599	13809679	1	-	1	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13809599	13809679	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13809680	13810005	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13810006	13810307	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13810006	13810307	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13810308	13810849	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13810850	13810949	0.78	-	1	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13810850	13810949	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13810950	13811061	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811062	13811114	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811062	13811114	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811115	13811189	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811190	13811336	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811190	13811336	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811337	13811433	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811434	13811576	1	-	2	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811434	13811576	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811577	13811737	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811738	13811789	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811738	13811789	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811790	13811989	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811990	13812052	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811990	13812052	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812053	13812237	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812238	13812351	0.66	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812238	13812351	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812352	13812440	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812441	13812578	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812441	13812578	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812579	13812735	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812736	13812828	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812736	13812828	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812829	13812907	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812908	13813000	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812908	13813000	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813001	13813100	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813101	13813210	1	-	2	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813101	13813210	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813211	13813306	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813307	13813355	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813307	13813355	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813356	13813484	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813485	13813598	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813485	13813598	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813599	13813686	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813687	13813746	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813687	13813746	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813747	13813934	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813935	13814003	0.98	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813935	13814003	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814004	13814131	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13814132	13814233	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13814132	13814233	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814234	13814322	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13814323	13814351	1	-	2	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13814323	13814351	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814352	13814581	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13814582	13814864	1	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13814582	13814864	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814865	13815008	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13815009	13815419	0.93	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13815009	13815419	.	-	.	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	start_codon	13815417	13815419	.	-	0	transcript_id "Ledus.S2G183800.t3"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	transcript	13809408	13815419	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	stop_codon	13809405	13809407	.	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13809408	13809420	1	-	1	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13809408	13809420	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13809421	13809598	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13809599	13809679	1	-	1	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13809599	13809679	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13809680	13810005	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13810006	13810307	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13810006	13810307	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13810308	13810849	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13810850	13810949	0.75	-	1	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13810850	13810949	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13810950	13811061	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811062	13811114	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811062	13811114	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811115	13811189	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811190	13811336	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811190	13811336	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811337	13811433	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811434	13811609	0.43	-	2	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811434	13811609	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811610	13811737	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811738	13811789	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811738	13811789	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13811790	13811938	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13811939	13812052	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13811939	13812052	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812053	13812237	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812238	13812351	0.69	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812238	13812351	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812352	13812440	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812441	13812578	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812441	13812578	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812579	13812735	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812736	13812828	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812736	13812828	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13812829	13812907	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13812908	13813000	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13812908	13813000	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813001	13813100	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813101	13813210	1	-	2	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813101	13813210	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813211	13813306	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813307	13813355	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813307	13813355	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813356	13813484	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813485	13813598	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813485	13813598	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813599	13813686	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813687	13813746	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813687	13813746	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13813747	13813934	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13813935	13814003	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13813935	13814003	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814004	13814131	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13814132	13814233	1	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13814132	13814233	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814234	13814322	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13814323	13814351	1	-	2	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13814323	13814351	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814352	13814581	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13814582	13814864	0.98	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13814582	13814864	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	intron	13814865	13815008	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	CDS	13815009	13815419	0.92	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	exon	13815009	13815419	.	-	.	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
Ledus.S2	AUGUSTUS	start_codon	13815417	13815419	.	-	0	transcript_id "Ledus.S2G183800.t4"; gene_id "Ledus.S2G183800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11352.t1 is derived from g4970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3726672	3727580	.	-	.	Ledus.S4G050800
Ledus.S4	AUGUSTUS	transcript	3726672	3727580	.	-	.	transcript_id "Ledus.S4G050800.t1"; gene_id "Ledus.S4G050800"
Ledus.S4	AUGUSTUS	stop_codon	3726669	3726671	.	-	0	transcript_id "Ledus.S4G050800.t1"; gene_id "Ledus.S4G050800"
Ledus.S4	AUGUSTUS	CDS	3726672	3726723	0.86	-	1	transcript_id "Ledus.S4G050800.t1"; gene_id "Ledus.S4G050800"
Ledus.S4	AUGUSTUS	exon	3726672	3726723	.	-	.	transcript_id "Ledus.S4G050800.t1"; gene_id "Ledus.S4G050800"
Ledus.S4	AUGUSTUS	intron	3726724	3726833	.	-	.	transcript_id "Ledus.S4G050800.t1"; gene_id "Ledus.S4G050800"
Ledus.S4	AUGUSTUS	CDS	3726834	3726874	0.91	-	0	transcript_id "Ledus.S4G050800.t1"; gene_id "Ledus.S4G050800"
Ledus.S4	AUGUSTUS	exon	3726834	3726874	.	-	.	transcript_id "Ledus.S4G050800.t1"; gene_id "Ledus.S4G050800"
Ledus.S4	AUGUSTUS	intron	3726875	3726989	.	-	.	transcript_id "Ledus.S4G050800.t1"; gene_id "Ledus.S4G050800"
Ledus.S4	AUGUSTUS	CDS	3726990	3727580	0.8	-	0	transcript_id "Ledus.S4G050800.t1"; gene_id "Ledus.S4G050800"
Ledus.S4	AUGUSTUS	exon	3726990	3727580	.	-	.	transcript_id "Ledus.S4G050800.t1"; gene_id "Ledus.S4G050800"
Ledus.S4	AUGUSTUS	start_codon	3727578	3727580	.	-	0	transcript_id "Ledus.S4G050800.t1"; gene_id "Ledus.S4G050800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12353.t1 is derived from g5974.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11365938	11366384	.	-	.	Ledus.S4G150900
Ledus.S4	AUGUSTUS	transcript	11365938	11366384	.	-	.	transcript_id "Ledus.S4G150900.t1"; gene_id "Ledus.S4G150900"
Ledus.S4	AUGUSTUS	stop_codon	11365935	11365937	.	-	0	transcript_id "Ledus.S4G150900.t1"; gene_id "Ledus.S4G150900"
Ledus.S4	AUGUSTUS	CDS	11365938	11366384	0.68	-	0	transcript_id "Ledus.S4G150900.t1"; gene_id "Ledus.S4G150900"
Ledus.S4	AUGUSTUS	exon	11365938	11366384	.	-	.	transcript_id "Ledus.S4G150900.t1"; gene_id "Ledus.S4G150900"
Ledus.S4	AUGUSTUS	start_codon	11366382	11366384	.	-	0	transcript_id "Ledus.S4G150900.t1"; gene_id "Ledus.S4G150900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2770.t1 is derived from g204.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3418935	3419797	.	-	.	Ledus.S1G019100
Ledus.S1	AUGUSTUS	transcript	3418935	3419797	.	-	.	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	stop_codon	3418932	3418934	.	-	0	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	CDS	3418935	3419246	0.57	-	0	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	exon	3418935	3419246	.	-	.	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	intron	3419247	3419458	.	-	.	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	CDS	3419459	3419507	0.57	-	1	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	exon	3419459	3419507	.	-	.	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	intron	3419508	3419586	.	-	.	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	CDS	3419587	3419593	0.57	-	2	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	exon	3419587	3419593	.	-	.	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	intron	3419594	3419787	.	-	.	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	CDS	3419788	3419797	0.39	-	0	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	exon	3419788	3419797	.	-	.	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
Ledus.S1	AUGUSTUS	start_codon	3419795	3419797	.	-	0	transcript_id "Ledus.S1G019100.t1"; gene_id "Ledus.S1G019100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7311.t1 is derived from g11982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	981052	982366	.	+	.	Ledus.S5G008900
Ledus.S5	AUGUSTUS	transcript	981052	982366	.	+	.	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	start_codon	981052	981054	.	+	0	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	CDS	981052	981163	1	+	0	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	exon	981052	981163	.	+	.	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	intron	981164	981237	.	+	.	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	CDS	981238	981446	1	+	2	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	exon	981238	981446	.	+	.	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	intron	981447	981539	.	+	.	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	CDS	981540	981718	1	+	0	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	exon	981540	981718	.	+	.	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	intron	981719	981802	.	+	.	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	CDS	981803	981881	1	+	1	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	exon	981803	981881	.	+	.	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	intron	981882	982015	.	+	.	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	CDS	982016	982085	0.69	+	0	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	exon	982016	982085	.	+	.	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	intron	982086	982361	.	+	.	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	CDS	982362	982366	0.76	+	2	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	exon	982362	982366	.	+	.	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
Ledus.S5	AUGUSTUS	stop_codon	982367	982369	.	+	0	transcript_id "Ledus.S5G008900.t1"; gene_id "Ledus.S5G008900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6073.t1 is derived from g3516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28816911	28818311	.	-	.	Ledus.S1G349400
Ledus.S1	AUGUSTUS	transcript	28816911	28818311	.	-	.	transcript_id "Ledus.S1G349400.t1"; gene_id "Ledus.S1G349400"
Ledus.S1	AUGUSTUS	stop_codon	28816908	28816910	.	-	0	transcript_id "Ledus.S1G349400.t1"; gene_id "Ledus.S1G349400"
Ledus.S1	AUGUSTUS	CDS	28816911	28817898	0.58	-	1	transcript_id "Ledus.S1G349400.t1"; gene_id "Ledus.S1G349400"
Ledus.S1	AUGUSTUS	exon	28816911	28817898	.	-	.	transcript_id "Ledus.S1G349400.t1"; gene_id "Ledus.S1G349400"
Ledus.S1	AUGUSTUS	intron	28817899	28817979	.	-	.	transcript_id "Ledus.S1G349400.t1"; gene_id "Ledus.S1G349400"
Ledus.S1	AUGUSTUS	CDS	28817980	28818109	0.61	-	2	transcript_id "Ledus.S1G349400.t1"; gene_id "Ledus.S1G349400"
Ledus.S1	AUGUSTUS	exon	28817980	28818109	.	-	.	transcript_id "Ledus.S1G349400.t1"; gene_id "Ledus.S1G349400"
Ledus.S1	AUGUSTUS	intron	28818110	28818187	.	-	.	transcript_id "Ledus.S1G349400.t1"; gene_id "Ledus.S1G349400"
Ledus.S1	AUGUSTUS	CDS	28818188	28818311	0.66	-	0	transcript_id "Ledus.S1G349400.t1"; gene_id "Ledus.S1G349400"
Ledus.S1	AUGUSTUS	exon	28818188	28818311	.	-	.	transcript_id "Ledus.S1G349400.t1"; gene_id "Ledus.S1G349400"
Ledus.S1	AUGUSTUS	start_codon	28818309	28818311	.	-	0	transcript_id "Ledus.S1G349400.t1"; gene_id "Ledus.S1G349400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7135.t1 is derived from g6666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1718841	1719664	.	+	.	Ledus.C7G019600
Ledus.C7	AUGUSTUS	transcript	1718841	1719664	.	+	.	transcript_id "Ledus.C7G019600.t1"; gene_id "Ledus.C7G019600"
Ledus.C7	AUGUSTUS	start_codon	1718841	1718843	.	+	0	transcript_id "Ledus.C7G019600.t1"; gene_id "Ledus.C7G019600"
Ledus.C7	AUGUSTUS	CDS	1718841	1719068	1	+	0	transcript_id "Ledus.C7G019600.t1"; gene_id "Ledus.C7G019600"
Ledus.C7	AUGUSTUS	exon	1718841	1719068	.	+	.	transcript_id "Ledus.C7G019600.t1"; gene_id "Ledus.C7G019600"
Ledus.C7	AUGUSTUS	intron	1719069	1719154	.	+	.	transcript_id "Ledus.C7G019600.t1"; gene_id "Ledus.C7G019600"
Ledus.C7	AUGUSTUS	CDS	1719155	1719664	1	+	0	transcript_id "Ledus.C7G019600.t1"; gene_id "Ledus.C7G019600"
Ledus.C7	AUGUSTUS	exon	1719155	1719664	.	+	.	transcript_id "Ledus.C7G019600.t1"; gene_id "Ledus.C7G019600"
Ledus.C7	AUGUSTUS	stop_codon	1719665	1719667	.	+	0	transcript_id "Ledus.C7G019600.t1"; gene_id "Ledus.C7G019600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5089.t1 is derived from g2528.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21498603	21499807	.	-	.	Ledus.S1G251000
Ledus.S1	AUGUSTUS	transcript	21498603	21499807	.	-	.	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	stop_codon	21498600	21498602	.	-	0	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	CDS	21498603	21498782	1	-	0	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	exon	21498603	21498782	.	-	.	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	intron	21498783	21498867	.	-	.	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	CDS	21498868	21499035	0.97	-	0	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	exon	21498868	21499035	.	-	.	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	intron	21499036	21499138	.	-	.	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	CDS	21499139	21499206	0.98	-	2	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	exon	21499139	21499206	.	-	.	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	intron	21499207	21499290	.	-	.	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	CDS	21499291	21499807	0.76	-	0	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	exon	21499291	21499807	.	-	.	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
Ledus.S1	AUGUSTUS	start_codon	21499805	21499807	.	-	0	transcript_id "Ledus.S1G251000.t1"; gene_id "Ledus.S1G251000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12043.t1 is derived from g5662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9151216	9153114	.	-	.	Ledus.S4G119900
Ledus.S4	AUGUSTUS	transcript	9151216	9153114	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	stop_codon	9151213	9151215	.	-	0	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	CDS	9151216	9151285	0.99	-	1	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	exon	9151216	9151285	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	intron	9151286	9151406	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	CDS	9151407	9151498	1	-	0	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	exon	9151407	9151498	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	intron	9151499	9151647	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	CDS	9151648	9151845	1	-	0	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	exon	9151648	9151845	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	intron	9151846	9151963	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	CDS	9151964	9152104	1	-	0	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	exon	9151964	9152104	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	intron	9152105	9152205	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	CDS	9152206	9152308	1	-	1	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	exon	9152206	9152308	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	intron	9152309	9152384	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	CDS	9152385	9152452	1	-	0	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	exon	9152385	9152452	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	intron	9152453	9152547	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	CDS	9152548	9152643	1	-	0	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	exon	9152548	9152643	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	intron	9152644	9152752	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	CDS	9152753	9152819	1	-	1	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	exon	9152753	9152819	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	intron	9152820	9152925	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	CDS	9152926	9152943	0.99	-	1	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	exon	9152926	9152943	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	intron	9152944	9153022	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	CDS	9153023	9153114	0.81	-	0	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	exon	9153023	9153114	.	-	.	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
Ledus.S4	AUGUSTUS	start_codon	9153112	9153114	.	-	0	transcript_id "Ledus.S4G119900.t1"; gene_id "Ledus.S4G119900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11333.t1 is derived from g4951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3657174	3657922	.	-	.	Ledus.S4G048900
Ledus.S4	AUGUSTUS	transcript	3657174	3657922	.	-	.	transcript_id "Ledus.S4G048900.t1"; gene_id "Ledus.S4G048900"
Ledus.S4	AUGUSTUS	stop_codon	3657171	3657173	.	-	0	transcript_id "Ledus.S4G048900.t1"; gene_id "Ledus.S4G048900"
Ledus.S4	AUGUSTUS	CDS	3657174	3657392	0.99	-	0	transcript_id "Ledus.S4G048900.t1"; gene_id "Ledus.S4G048900"
Ledus.S4	AUGUSTUS	exon	3657174	3657392	.	-	.	transcript_id "Ledus.S4G048900.t1"; gene_id "Ledus.S4G048900"
Ledus.S4	AUGUSTUS	intron	3657393	3657492	.	-	.	transcript_id "Ledus.S4G048900.t1"; gene_id "Ledus.S4G048900"
Ledus.S4	AUGUSTUS	CDS	3657493	3657624	1	-	0	transcript_id "Ledus.S4G048900.t1"; gene_id "Ledus.S4G048900"
Ledus.S4	AUGUSTUS	exon	3657493	3657624	.	-	.	transcript_id "Ledus.S4G048900.t1"; gene_id "Ledus.S4G048900"
Ledus.S4	AUGUSTUS	intron	3657625	3657727	.	-	.	transcript_id "Ledus.S4G048900.t1"; gene_id "Ledus.S4G048900"
Ledus.S4	AUGUSTUS	CDS	3657728	3657922	1	-	0	transcript_id "Ledus.S4G048900.t1"; gene_id "Ledus.S4G048900"
Ledus.S4	AUGUSTUS	exon	3657728	3657922	.	-	.	transcript_id "Ledus.S4G048900.t1"; gene_id "Ledus.S4G048900"
Ledus.S4	AUGUSTUS	start_codon	3657920	3657922	.	-	0	transcript_id "Ledus.S4G048900.t1"; gene_id "Ledus.S4G048900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4566.t1 is derived from g2003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17747609	17750254	.	+	.	Ledus.S1G198700
Ledus.S1	AUGUSTUS	transcript	17747609	17750254	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	start_codon	17747609	17747611	.	+	0	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	CDS	17747609	17747621	0.75	+	0	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	exon	17747609	17747621	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	intron	17747622	17747693	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	CDS	17747694	17747995	0.62	+	2	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	exon	17747694	17747995	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	intron	17747996	17748047	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	CDS	17748048	17748152	1	+	0	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	exon	17748048	17748152	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	intron	17748153	17748220	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	CDS	17748221	17748361	1	+	0	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	exon	17748221	17748361	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	intron	17748362	17748427	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	CDS	17748428	17748527	1	+	0	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	exon	17748428	17748527	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	intron	17748528	17748594	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	CDS	17748595	17748720	1	+	2	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	exon	17748595	17748720	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	intron	17748721	17748799	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	CDS	17748800	17749113	0.24	+	2	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	exon	17748800	17749113	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	intron	17749114	17749214	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	CDS	17749215	17749334	0.75	+	0	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	exon	17749215	17749334	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	intron	17749335	17749414	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	CDS	17749415	17749642	1	+	0	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	exon	17749415	17749642	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	intron	17749643	17749768	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	CDS	17749769	17749894	0.93	+	0	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	exon	17749769	17749894	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	intron	17749895	17750011	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	CDS	17750012	17750254	1	+	0	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	exon	17750012	17750254	.	+	.	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
Ledus.S1	AUGUSTUS	stop_codon	17750255	17750257	.	+	0	transcript_id "Ledus.S1G198700.t1"; gene_id "Ledus.S1G198700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11334.t1 is derived from g4952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3663911	3664667	.	-	.	Ledus.S4G049000
Ledus.S4	AUGUSTUS	transcript	3663911	3664667	.	-	.	transcript_id "Ledus.S4G049000.t1"; gene_id "Ledus.S4G049000"
Ledus.S4	AUGUSTUS	stop_codon	3663908	3663910	.	-	0	transcript_id "Ledus.S4G049000.t1"; gene_id "Ledus.S4G049000"
Ledus.S4	AUGUSTUS	CDS	3663911	3664160	0.98	-	1	transcript_id "Ledus.S4G049000.t1"; gene_id "Ledus.S4G049000"
Ledus.S4	AUGUSTUS	exon	3663911	3664160	.	-	.	transcript_id "Ledus.S4G049000.t1"; gene_id "Ledus.S4G049000"
Ledus.S4	AUGUSTUS	intron	3664161	3664247	.	-	.	transcript_id "Ledus.S4G049000.t1"; gene_id "Ledus.S4G049000"
Ledus.S4	AUGUSTUS	CDS	3664248	3664330	1	-	0	transcript_id "Ledus.S4G049000.t1"; gene_id "Ledus.S4G049000"
Ledus.S4	AUGUSTUS	exon	3664248	3664330	.	-	.	transcript_id "Ledus.S4G049000.t1"; gene_id "Ledus.S4G049000"
Ledus.S4	AUGUSTUS	intron	3664331	3664445	.	-	.	transcript_id "Ledus.S4G049000.t1"; gene_id "Ledus.S4G049000"
Ledus.S4	AUGUSTUS	CDS	3664446	3664667	0.76	-	0	transcript_id "Ledus.S4G049000.t1"; gene_id "Ledus.S4G049000"
Ledus.S4	AUGUSTUS	exon	3664446	3664667	.	-	.	transcript_id "Ledus.S4G049000.t1"; gene_id "Ledus.S4G049000"
Ledus.S4	AUGUSTUS	start_codon	3664665	3664667	.	-	0	transcript_id "Ledus.S4G049000.t1"; gene_id "Ledus.S4G049000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10291.t1 is derived from g11321.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14099530	14101646	.	-	.	Ledus.S3G176800
Ledus.S3	AUGUSTUS	transcript	14099530	14101646	.	-	.	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	stop_codon	14099527	14099529	.	-	0	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	CDS	14099530	14099946	0.85	-	0	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	exon	14099530	14099946	.	-	.	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	intron	14099947	14100035	.	-	.	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	CDS	14100036	14101277	0.98	-	0	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	exon	14100036	14101277	.	-	.	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	intron	14101278	14101384	.	-	.	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	CDS	14101385	14101421	0.98	-	1	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	exon	14101385	14101421	.	-	.	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	intron	14101422	14101548	.	-	.	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	CDS	14101549	14101646	0.94	-	0	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	exon	14101549	14101646	.	-	.	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
Ledus.S3	AUGUSTUS	start_codon	14101644	14101646	.	-	0	transcript_id "Ledus.S3G176800.t1"; gene_id "Ledus.S3G176800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1987.t1 is derived from g8850.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14066991	14069591	.	+	.	Ledus.S2G186900
Ledus.S2	AUGUSTUS	transcript	14066991	14069591	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	start_codon	14066991	14066993	.	+	0	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	CDS	14066991	14067154	0.88	+	0	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	exon	14066991	14067154	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	intron	14067155	14067248	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	CDS	14067249	14067363	1	+	1	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	exon	14067249	14067363	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	intron	14067364	14067471	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	CDS	14067472	14067574	1	+	0	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	exon	14067472	14067574	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	intron	14067575	14067663	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	CDS	14067664	14067727	0.95	+	2	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	exon	14067664	14067727	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	intron	14067728	14067984	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	CDS	14067985	14068108	0.59	+	1	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	exon	14067985	14068108	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	intron	14068109	14068218	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	CDS	14068219	14068296	0.98	+	0	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	exon	14068219	14068296	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	intron	14068297	14068531	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	CDS	14068532	14068753	1	+	0	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	exon	14068532	14068753	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	intron	14068754	14068840	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	CDS	14068841	14068948	1	+	0	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	exon	14068841	14068948	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	intron	14068949	14069048	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	CDS	14069049	14069228	0.99	+	0	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	exon	14069049	14069228	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	intron	14069229	14069336	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	CDS	14069337	14069591	0.99	+	0	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	exon	14069337	14069591	.	+	.	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
Ledus.S2	AUGUSTUS	stop_codon	14069592	14069594	.	+	0	transcript_id "Ledus.S2G186900.t1"; gene_id "Ledus.S2G186900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2636.t1 is derived from g69.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	959317	959565	.	+	.	Ledus.S1G005700
Ledus.S1	AUGUSTUS	transcript	959317	959565	.	+	.	transcript_id "Ledus.S1G005700.t1"; gene_id "Ledus.S1G005700"
Ledus.S1	AUGUSTUS	start_codon	959317	959319	.	+	0	transcript_id "Ledus.S1G005700.t1"; gene_id "Ledus.S1G005700"
Ledus.S1	AUGUSTUS	CDS	959317	959565	0.66	+	0	transcript_id "Ledus.S1G005700.t1"; gene_id "Ledus.S1G005700"
Ledus.S1	AUGUSTUS	exon	959317	959565	.	+	.	transcript_id "Ledus.S1G005700.t1"; gene_id "Ledus.S1G005700"
Ledus.S1	AUGUSTUS	stop_codon	959566	959568	.	+	0	transcript_id "Ledus.S1G005700.t1"; gene_id "Ledus.S1G005700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3457.t1 is derived from g892.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8477663	8482094	.	-	.	Ledus.S1G087800
Ledus.S1	AUGUSTUS	transcript	8477663	8482094	.	-	.	transcript_id "Ledus.S1G087800.t1"; gene_id "Ledus.S1G087800"
Ledus.S1	AUGUSTUS	stop_codon	8477660	8477662	.	-	0	transcript_id "Ledus.S1G087800.t1"; gene_id "Ledus.S1G087800"
Ledus.S1	AUGUSTUS	CDS	8477663	8481730	1	-	0	transcript_id "Ledus.S1G087800.t1"; gene_id "Ledus.S1G087800"
Ledus.S1	AUGUSTUS	exon	8477663	8481730	.	-	.	transcript_id "Ledus.S1G087800.t1"; gene_id "Ledus.S1G087800"
Ledus.S1	AUGUSTUS	intron	8481731	8481843	.	-	.	transcript_id "Ledus.S1G087800.t1"; gene_id "Ledus.S1G087800"
Ledus.S1	AUGUSTUS	CDS	8481844	8481958	0.99	-	1	transcript_id "Ledus.S1G087800.t1"; gene_id "Ledus.S1G087800"
Ledus.S1	AUGUSTUS	exon	8481844	8481958	.	-	.	transcript_id "Ledus.S1G087800.t1"; gene_id "Ledus.S1G087800"
Ledus.S1	AUGUSTUS	intron	8481959	8482050	.	-	.	transcript_id "Ledus.S1G087800.t1"; gene_id "Ledus.S1G087800"
Ledus.S1	AUGUSTUS	CDS	8482051	8482094	1	-	0	transcript_id "Ledus.S1G087800.t1"; gene_id "Ledus.S1G087800"
Ledus.S1	AUGUSTUS	exon	8482051	8482094	.	-	.	transcript_id "Ledus.S1G087800.t1"; gene_id "Ledus.S1G087800"
Ledus.S1	AUGUSTUS	start_codon	8482092	8482094	.	-	0	transcript_id "Ledus.S1G087800.t1"; gene_id "Ledus.S1G087800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3156.t1 is derived from g591.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6389611	6390933	.	-	.	Ledus.S1G057700
Ledus.S1	AUGUSTUS	transcript	6389611	6390933	.	-	.	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	stop_codon	6389608	6389610	.	-	0	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	CDS	6389611	6389719	0.55	-	1	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	exon	6389611	6389719	.	-	.	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	intron	6389720	6389806	.	-	.	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	CDS	6389807	6390098	0.65	-	2	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	exon	6389807	6390098	.	-	.	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	intron	6390099	6390168	.	-	.	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	CDS	6390169	6390410	1	-	1	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	exon	6390169	6390410	.	-	.	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	intron	6390411	6390493	.	-	.	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	CDS	6390494	6390630	1	-	0	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	exon	6390494	6390630	.	-	.	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	intron	6390631	6390699	.	-	.	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	CDS	6390700	6390933	0.7	-	0	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	exon	6390700	6390933	.	-	.	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
Ledus.S1	AUGUSTUS	start_codon	6390931	6390933	.	-	0	transcript_id "Ledus.S1G057700.t1"; gene_id "Ledus.S1G057700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6213.t1 is derived from g3656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29686659	29687042	.	+	.	Ledus.S1G363400
Ledus.S1	AUGUSTUS	transcript	29686659	29687042	.	+	.	transcript_id "Ledus.S1G363400.t1"; gene_id "Ledus.S1G363400"
Ledus.S1	AUGUSTUS	start_codon	29686659	29686661	.	+	0	transcript_id "Ledus.S1G363400.t1"; gene_id "Ledus.S1G363400"
Ledus.S1	AUGUSTUS	CDS	29686659	29687042	0.55	+	0	transcript_id "Ledus.S1G363400.t1"; gene_id "Ledus.S1G363400"
Ledus.S1	AUGUSTUS	exon	29686659	29687042	.	+	.	transcript_id "Ledus.S1G363400.t1"; gene_id "Ledus.S1G363400"
Ledus.S1	AUGUSTUS	stop_codon	29687043	29687045	.	+	0	transcript_id "Ledus.S1G363400.t1"; gene_id "Ledus.S1G363400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6087.t1 is derived from g3530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28866424	28866938	.	-	.	Ledus.S1G350800
Ledus.S1	AUGUSTUS	transcript	28866424	28866938	.	-	.	transcript_id "Ledus.S1G350800.t1"; gene_id "Ledus.S1G350800"
Ledus.S1	AUGUSTUS	stop_codon	28866421	28866423	.	-	0	transcript_id "Ledus.S1G350800.t1"; gene_id "Ledus.S1G350800"
Ledus.S1	AUGUSTUS	CDS	28866424	28866717	0.98	-	0	transcript_id "Ledus.S1G350800.t1"; gene_id "Ledus.S1G350800"
Ledus.S1	AUGUSTUS	exon	28866424	28866717	.	-	.	transcript_id "Ledus.S1G350800.t1"; gene_id "Ledus.S1G350800"
Ledus.S1	AUGUSTUS	intron	28866718	28866848	.	-	.	transcript_id "Ledus.S1G350800.t1"; gene_id "Ledus.S1G350800"
Ledus.S1	AUGUSTUS	CDS	28866849	28866938	0.87	-	0	transcript_id "Ledus.S1G350800.t1"; gene_id "Ledus.S1G350800"
Ledus.S1	AUGUSTUS	exon	28866849	28866938	.	-	.	transcript_id "Ledus.S1G350800.t1"; gene_id "Ledus.S1G350800"
Ledus.S1	AUGUSTUS	start_codon	28866936	28866938	.	-	0	transcript_id "Ledus.S1G350800.t1"; gene_id "Ledus.S1G350800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6399.t1 is derived from g3842.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31042839	31045958	.	+	.	Ledus.S1G382000
Ledus.S1	AUGUSTUS	transcript	31042839	31045958	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	start_codon	31042839	31042841	.	+	0	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	CDS	31042839	31043060	0.99	+	0	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	exon	31042839	31043060	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	intron	31043061	31043142	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	CDS	31043143	31043211	1	+	0	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	exon	31043143	31043211	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	intron	31043212	31043297	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	CDS	31043298	31043456	0.99	+	0	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	exon	31043298	31043456	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	intron	31043457	31043557	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	CDS	31043558	31043799	1	+	0	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	exon	31043558	31043799	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	intron	31043800	31044708	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	CDS	31044709	31044847	0.98	+	1	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	exon	31044709	31044847	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	intron	31044848	31044948	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	CDS	31044949	31045005	0.91	+	0	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	exon	31044949	31045005	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	intron	31045006	31045093	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	CDS	31045094	31045228	1	+	0	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	exon	31045094	31045228	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	intron	31045229	31045321	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	CDS	31045322	31045557	1	+	0	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	exon	31045322	31045557	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	intron	31045558	31045738	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	CDS	31045739	31045783	1	+	1	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	exon	31045739	31045783	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	intron	31045784	31045876	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	CDS	31045877	31045958	1	+	1	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	exon	31045877	31045958	.	+	.	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
Ledus.S1	AUGUSTUS	stop_codon	31045959	31045961	.	+	0	transcript_id "Ledus.S1G382000.t1"; gene_id "Ledus.S1G382000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5069.t1 is derived from g2508.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21439854	21446525	.	-	.	Ledus.S1G249000
Ledus.S1	AUGUSTUS	transcript	21439854	21446525	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	stop_codon	21439851	21439853	.	-	0	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21439854	21440130	0.98	-	1	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21439854	21440130	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21440131	21440213	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21440214	21440318	0.99	-	1	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21440214	21440318	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21440319	21440423	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21440424	21440569	1	-	0	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21440424	21440569	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21440570	21440648	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21440649	21440712	1	-	1	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21440649	21440712	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21440713	21440799	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21440800	21440976	1	-	1	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21440800	21440976	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21440977	21441065	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21441066	21441433	1	-	0	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21441066	21441433	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21441434	21441565	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21441566	21441682	1	-	0	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21441566	21441682	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21441683	21442369	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21442370	21442448	1	-	1	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21442370	21442448	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21442449	21442657	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21442658	21443403	0.99	-	0	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21442658	21443403	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21443404	21443519	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21443520	21443591	0.99	-	0	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21443520	21443591	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21443592	21443685	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21443686	21443776	1	-	1	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21443686	21443776	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21443777	21444107	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21444108	21444246	1	-	2	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21444108	21444246	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21444247	21444374	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21444375	21444852	1	-	0	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21444375	21444852	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21444853	21445204	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21445205	21446027	0.32	-	1	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21445205	21446027	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21446028	21446122	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21446123	21446216	0.52	-	2	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21446123	21446216	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21446217	21446298	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21446299	21446362	0.79	-	0	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21446299	21446362	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21446363	21446441	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21446442	21446525	0.65	-	0	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21446442	21446525	.	-	.	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	start_codon	21446523	21446525	.	-	0	transcript_id "Ledus.S1G249000.t1"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	transcript	21439854	21446525	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	stop_codon	21439851	21439853	.	-	0	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21439854	21440130	0.99	-	1	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21439854	21440130	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21440131	21440213	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21440214	21440318	1	-	1	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21440214	21440318	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21440319	21440423	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21440424	21440569	1	-	0	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21440424	21440569	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21440570	21440648	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21440649	21440712	1	-	1	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21440649	21440712	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21440713	21440799	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21440800	21440973	0.99	-	1	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21440800	21440973	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21440974	21441065	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21441066	21441433	1	-	0	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21441066	21441433	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21441434	21441565	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21441566	21441682	1	-	0	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21441566	21441682	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21441683	21442369	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21442370	21442448	1	-	1	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21442370	21442448	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21442449	21442657	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21442658	21443403	1	-	0	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21442658	21443403	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21443404	21443519	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21443520	21443591	0.98	-	0	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21443520	21443591	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21443592	21443685	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21443686	21443776	1	-	1	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21443686	21443776	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21443777	21444107	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21444108	21444246	1	-	2	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21444108	21444246	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21444247	21444374	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21444375	21444852	1	-	0	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21444375	21444852	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21444853	21445204	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21445205	21446027	0.28	-	1	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21445205	21446027	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21446028	21446122	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21446123	21446216	0.48	-	2	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21446123	21446216	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21446217	21446298	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21446299	21446362	0.74	-	0	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21446299	21446362	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	intron	21446363	21446441	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	CDS	21446442	21446525	0.59	-	0	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	exon	21446442	21446525	.	-	.	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
Ledus.S1	AUGUSTUS	start_codon	21446523	21446525	.	-	0	transcript_id "Ledus.S1G249000.t2"; gene_id "Ledus.S1G249000"
# This transcript jg2088.t2 is derived from g8951.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2089.t1 is derived from g8952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14687564	14688395	.	-	.	Ledus.S2G197100
Ledus.S2	AUGUSTUS	transcript	14687564	14688395	.	-	.	transcript_id "Ledus.S2G197100.t1"; gene_id "Ledus.S2G197100"
Ledus.S2	AUGUSTUS	stop_codon	14687561	14687563	.	-	0	transcript_id "Ledus.S2G197100.t1"; gene_id "Ledus.S2G197100"
Ledus.S2	AUGUSTUS	CDS	14687564	14687761	0.93	-	0	transcript_id "Ledus.S2G197100.t1"; gene_id "Ledus.S2G197100"
Ledus.S2	AUGUSTUS	exon	14687564	14687761	.	-	.	transcript_id "Ledus.S2G197100.t1"; gene_id "Ledus.S2G197100"
Ledus.S2	AUGUSTUS	intron	14687762	14688242	.	-	.	transcript_id "Ledus.S2G197100.t1"; gene_id "Ledus.S2G197100"
Ledus.S2	AUGUSTUS	CDS	14688243	14688395	0.97	-	0	transcript_id "Ledus.S2G197100.t1"; gene_id "Ledus.S2G197100"
Ledus.S2	AUGUSTUS	exon	14688243	14688395	.	-	.	transcript_id "Ledus.S2G197100.t1"; gene_id "Ledus.S2G197100"
Ledus.S2	AUGUSTUS	start_codon	14688393	14688395	.	-	0	transcript_id "Ledus.S2G197100.t1"; gene_id "Ledus.S2G197100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11471.t1 is derived from g5089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4519213	4521000	.	+	.	Ledus.S4G062700
Ledus.S4	AUGUSTUS	transcript	4519213	4521000	.	+	.	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	start_codon	4519213	4519215	.	+	0	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	CDS	4519213	4519524	0.54	+	0	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	exon	4519213	4519524	.	+	.	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	intron	4519525	4519616	.	+	.	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	CDS	4519617	4519706	0.93	+	0	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	exon	4519617	4519706	.	+	.	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	intron	4519707	4519814	.	+	.	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	CDS	4519815	4519963	0.84	+	0	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	exon	4519815	4519963	.	+	.	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	intron	4519964	4520432	.	+	.	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	CDS	4520433	4520565	0.43	+	1	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	exon	4520433	4520565	.	+	.	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	intron	4520566	4520691	.	+	.	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	CDS	4520692	4520795	0.62	+	0	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	exon	4520692	4520795	.	+	.	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	intron	4520796	4520972	.	+	.	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	CDS	4520973	4521000	0.7	+	1	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	exon	4520973	4521000	.	+	.	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
Ledus.S4	AUGUSTUS	stop_codon	4521001	4521003	.	+	0	transcript_id "Ledus.S4G062700.t1"; gene_id "Ledus.S4G062700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9306.t1 is derived from g10336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5887407	5887957	.	+	.	Ledus.S3G078300
Ledus.S3	AUGUSTUS	transcript	5887407	5887957	.	+	.	transcript_id "Ledus.S3G078300.t1"; gene_id "Ledus.S3G078300"
Ledus.S3	AUGUSTUS	start_codon	5887407	5887409	.	+	0	transcript_id "Ledus.S3G078300.t1"; gene_id "Ledus.S3G078300"
Ledus.S3	AUGUSTUS	CDS	5887407	5887568	0.87	+	0	transcript_id "Ledus.S3G078300.t1"; gene_id "Ledus.S3G078300"
Ledus.S3	AUGUSTUS	exon	5887407	5887568	.	+	.	transcript_id "Ledus.S3G078300.t1"; gene_id "Ledus.S3G078300"
Ledus.S3	AUGUSTUS	intron	5887569	5887831	.	+	.	transcript_id "Ledus.S3G078300.t1"; gene_id "Ledus.S3G078300"
Ledus.S3	AUGUSTUS	CDS	5887832	5887957	0.39	+	0	transcript_id "Ledus.S3G078300.t1"; gene_id "Ledus.S3G078300"
Ledus.S3	AUGUSTUS	exon	5887832	5887957	.	+	.	transcript_id "Ledus.S3G078300.t1"; gene_id "Ledus.S3G078300"
Ledus.S3	AUGUSTUS	stop_codon	5887958	5887960	.	+	0	transcript_id "Ledus.S3G078300.t1"; gene_id "Ledus.S3G078300"
# This transcript jg9852.t2 is derived from g10882.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9853.t1 is derived from g10883.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10569652	10575051	.	+	.	Ledus.S3G133000
Ledus.S3	AUGUSTUS	transcript	10569652	10575051	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	start_codon	10569652	10569654	.	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10569652	10570518	1	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10569652	10570518	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10570519	10570602	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10570603	10570758	1	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10570603	10570758	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10570759	10571064	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10571065	10571229	1	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10571065	10571229	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10571230	10571353	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10571354	10571452	1	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10571354	10571452	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10571453	10571596	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10571597	10571872	0.96	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10571597	10571872	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10571873	10572071	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10572072	10572341	0.99	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10572072	10572341	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10572342	10572754	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10572755	10572886	1	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10572755	10572886	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10572887	10573026	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10573027	10573287	1	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10573027	10573287	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10573288	10573474	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10573475	10573546	1	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10573475	10573546	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10573547	10573697	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10573698	10573844	1	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10573698	10573844	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10573845	10574123	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10574124	10574609	0.9	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10574124	10574609	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10574610	10574733	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10574734	10575051	0.73	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10574734	10575051	.	+	.	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	stop_codon	10575052	10575054	.	+	0	transcript_id "Ledus.S3G133000.t1"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	transcript	10569652	10575051	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	start_codon	10569652	10569654	.	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10569652	10570518	1	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10569652	10570518	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10570519	10570602	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10570603	10570758	1	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10570603	10570758	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10570759	10571064	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10571065	10571229	1	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10571065	10571229	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10571230	10571353	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10571354	10571452	1	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10571354	10571452	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10571453	10571596	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10571597	10571872	0.99	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10571597	10571872	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10571873	10572113	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10572114	10572341	0.96	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10572114	10572341	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10572342	10572754	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10572755	10572886	1	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10572755	10572886	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10572887	10573026	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10573027	10573287	1	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10573027	10573287	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10573288	10573474	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10573475	10573546	1	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10573475	10573546	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10573547	10573697	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10573698	10573844	1	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10573698	10573844	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10573845	10574123	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10574124	10574609	0.88	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10574124	10574609	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	intron	10574610	10574733	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	CDS	10574734	10575051	0.7	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	exon	10574734	10575051	.	+	.	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
Ledus.S3	AUGUSTUS	stop_codon	10575052	10575054	.	+	0	transcript_id "Ledus.S3G133000.t2"; gene_id "Ledus.S3G133000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5488.t1 is derived from g2927.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24503795	24504622	.	+	.	Ledus.S1G290900
Ledus.S1	AUGUSTUS	transcript	24503795	24504622	.	+	.	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	start_codon	24503795	24503797	.	+	0	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	CDS	24503795	24503981	0.93	+	0	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	exon	24503795	24503981	.	+	.	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	intron	24503982	24504074	.	+	.	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	CDS	24504075	24504249	1	+	2	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	exon	24504075	24504249	.	+	.	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	intron	24504250	24504345	.	+	.	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	CDS	24504346	24504412	0.97	+	1	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	exon	24504346	24504412	.	+	.	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	intron	24504413	24504529	.	+	.	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	CDS	24504530	24504622	0.97	+	0	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	exon	24504530	24504622	.	+	.	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
Ledus.S1	AUGUSTUS	stop_codon	24504623	24504625	.	+	0	transcript_id "Ledus.S1G290900.t1"; gene_id "Ledus.S1G290900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11998.t1 is derived from g5617.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8394918	8396273	.	-	.	Ledus.S4G115400
Ledus.S4	AUGUSTUS	transcript	8394918	8396273	.	-	.	transcript_id "Ledus.S4G115400.t1"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	stop_codon	8394915	8394917	.	-	0	transcript_id "Ledus.S4G115400.t1"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	CDS	8394918	8395199	1	-	0	transcript_id "Ledus.S4G115400.t1"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	exon	8394918	8395199	.	-	.	transcript_id "Ledus.S4G115400.t1"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	intron	8395200	8395408	.	-	.	transcript_id "Ledus.S4G115400.t1"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	CDS	8395409	8395923	1	-	2	transcript_id "Ledus.S4G115400.t1"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	exon	8395409	8395923	.	-	.	transcript_id "Ledus.S4G115400.t1"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	intron	8395924	8396086	.	-	.	transcript_id "Ledus.S4G115400.t1"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	CDS	8396087	8396273	0.55	-	0	transcript_id "Ledus.S4G115400.t1"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	exon	8396087	8396273	.	-	.	transcript_id "Ledus.S4G115400.t1"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	start_codon	8396271	8396273	.	-	0	transcript_id "Ledus.S4G115400.t1"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	transcript	8394918	8396273	.	-	.	transcript_id "Ledus.S4G115400.t2"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	stop_codon	8394915	8394917	.	-	0	transcript_id "Ledus.S4G115400.t2"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	CDS	8394918	8395199	1	-	0	transcript_id "Ledus.S4G115400.t2"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	exon	8394918	8395199	.	-	.	transcript_id "Ledus.S4G115400.t2"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	intron	8395200	8395390	.	-	.	transcript_id "Ledus.S4G115400.t2"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	CDS	8395391	8395923	1	-	2	transcript_id "Ledus.S4G115400.t2"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	exon	8395391	8395923	.	-	.	transcript_id "Ledus.S4G115400.t2"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	intron	8395924	8396086	.	-	.	transcript_id "Ledus.S4G115400.t2"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	CDS	8396087	8396273	0.49	-	0	transcript_id "Ledus.S4G115400.t2"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	exon	8396087	8396273	.	-	.	transcript_id "Ledus.S4G115400.t2"; gene_id "Ledus.S4G115400"
Ledus.S4	AUGUSTUS	start_codon	8396271	8396273	.	-	0	transcript_id "Ledus.S4G115400.t2"; gene_id "Ledus.S4G115400"
# This transcript jg9878.t2 is derived from g10908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9879.t1 is derived from g10909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10904656	10908948	.	-	.	Ledus.S3G135600
Ledus.S3	AUGUSTUS	transcript	10904656	10908948	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	stop_codon	10904552	10904554	.	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10904656	10904707	0.65	-	1	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10904656	10904707	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10904708	10904819	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10904820	10904893	0.85	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10904820	10904893	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10904894	10904981	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10904982	10905032	1	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10904982	10905032	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10905033	10905131	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10905132	10905239	1	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10905132	10905239	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10905240	10905378	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10905379	10905480	1	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10905379	10905480	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10905481	10905574	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10905575	10905661	1	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10905575	10905661	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10905662	10905797	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10905798	10905840	1	-	1	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10905798	10905840	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10905841	10906092	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10906093	10906221	1	-	1	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10906093	10906221	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10906222	10906379	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10906380	10906457	1	-	1	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10906380	10906457	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10906458	10906579	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10906580	10906629	1	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10906580	10906629	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10906630	10906753	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10906754	10906836	1	-	2	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10906754	10906836	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10906837	10907004	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10907005	10907068	0.98	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10907005	10907068	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10907069	10907181	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10907182	10907295	1	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10907182	10907295	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10907296	10907472	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10907473	10907538	1	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10907473	10907538	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10907539	10907727	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10907728	10907793	1	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10907728	10907793	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10907794	10907908	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10907909	10907950	1	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10907909	10907950	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10907951	10908096	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10908097	10908162	1	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10908097	10908162	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10908163	10908506	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10908507	10908562	0.87	-	2	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10908507	10908562	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10908563	10908641	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10908642	10908762	0.38	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10908642	10908762	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	intron	10908763	10908846	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	CDS	10908847	10908948	0.13	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	exon	10908847	10908948	.	-	.	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
Ledus.S3	AUGUSTUS	start_codon	10908946	10908948	.	-	0	transcript_id "Ledus.S3G135600.t1"; gene_id "Ledus.S3G135600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2066.t1 is derived from g8929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14427520	14428914	.	+	.	Ledus.S2G194800
Ledus.S2	AUGUSTUS	transcript	14427520	14428914	.	+	.	transcript_id "Ledus.S2G194800.t1"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	start_codon	14427520	14427522	.	+	0	transcript_id "Ledus.S2G194800.t1"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	CDS	14427520	14427932	0.99	+	0	transcript_id "Ledus.S2G194800.t1"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	exon	14427520	14427932	.	+	.	transcript_id "Ledus.S2G194800.t1"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	intron	14427933	14428003	.	+	.	transcript_id "Ledus.S2G194800.t1"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	CDS	14428004	14428453	0.99	+	1	transcript_id "Ledus.S2G194800.t1"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	exon	14428004	14428453	.	+	.	transcript_id "Ledus.S2G194800.t1"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	intron	14428454	14428517	.	+	.	transcript_id "Ledus.S2G194800.t1"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	CDS	14428518	14428914	1	+	1	transcript_id "Ledus.S2G194800.t1"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	exon	14428518	14428914	.	+	.	transcript_id "Ledus.S2G194800.t1"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	stop_codon	14428915	14428917	.	+	0	transcript_id "Ledus.S2G194800.t1"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	transcript	14428026	14428914	.	+	.	transcript_id "Ledus.S2G194800.t2"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	start_codon	14428026	14428028	.	+	0	transcript_id "Ledus.S2G194800.t2"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	CDS	14428026	14428453	1	+	0	transcript_id "Ledus.S2G194800.t2"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	exon	14428026	14428453	.	+	.	transcript_id "Ledus.S2G194800.t2"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	intron	14428454	14428517	.	+	.	transcript_id "Ledus.S2G194800.t2"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	CDS	14428518	14428914	0.99	+	1	transcript_id "Ledus.S2G194800.t2"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	exon	14428518	14428914	.	+	.	transcript_id "Ledus.S2G194800.t2"; gene_id "Ledus.S2G194800"
Ledus.S2	AUGUSTUS	stop_codon	14428915	14428917	.	+	0	transcript_id "Ledus.S2G194800.t2"; gene_id "Ledus.S2G194800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12912.t1 is derived from g4404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	300004	301139	.	+	.	Ledus.C9G002000
Ledus.C9	AUGUSTUS	transcript	300004	301139	.	+	.	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	start_codon	300004	300006	.	+	0	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	CDS	300004	300139	0.99	+	0	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	exon	300004	300139	.	+	.	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	intron	300140	300217	.	+	.	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	CDS	300218	300375	1	+	2	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	exon	300218	300375	.	+	.	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	intron	300376	300566	.	+	.	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	CDS	300567	300713	0.99	+	0	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	exon	300567	300713	.	+	.	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	intron	300714	300822	.	+	.	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	CDS	300823	300882	1	+	0	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	exon	300823	300882	.	+	.	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	intron	300883	300965	.	+	.	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	CDS	300966	301139	1	+	0	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	exon	300966	301139	.	+	.	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
Ledus.C9	AUGUSTUS	stop_codon	301140	301142	.	+	0	transcript_id "Ledus.C9G002000.t1"; gene_id "Ledus.C9G002000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4405.t1 is derived from g1841.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16922180	16922895	.	-	.	Ledus.S1G182600
Ledus.S1	AUGUSTUS	transcript	16922180	16922895	.	-	.	transcript_id "Ledus.S1G182600.t1"; gene_id "Ledus.S1G182600"
Ledus.S1	AUGUSTUS	stop_codon	16922177	16922179	.	-	0	transcript_id "Ledus.S1G182600.t1"; gene_id "Ledus.S1G182600"
Ledus.S1	AUGUSTUS	CDS	16922180	16922501	0.96	-	1	transcript_id "Ledus.S1G182600.t1"; gene_id "Ledus.S1G182600"
Ledus.S1	AUGUSTUS	exon	16922180	16922501	.	-	.	transcript_id "Ledus.S1G182600.t1"; gene_id "Ledus.S1G182600"
Ledus.S1	AUGUSTUS	intron	16922502	16922713	.	-	.	transcript_id "Ledus.S1G182600.t1"; gene_id "Ledus.S1G182600"
Ledus.S1	AUGUSTUS	CDS	16922714	16922895	0.42	-	0	transcript_id "Ledus.S1G182600.t1"; gene_id "Ledus.S1G182600"
Ledus.S1	AUGUSTUS	exon	16922714	16922895	.	-	.	transcript_id "Ledus.S1G182600.t1"; gene_id "Ledus.S1G182600"
Ledus.S1	AUGUSTUS	start_codon	16922893	16922895	.	-	0	transcript_id "Ledus.S1G182600.t1"; gene_id "Ledus.S1G182600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2512.t1 is derived from g9375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18528832	18531581	.	-	.	Ledus.S2G239400
Ledus.S2	AUGUSTUS	transcript	18528832	18531581	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	stop_codon	18528829	18528831	.	-	0	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	CDS	18528832	18528920	1	-	2	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	exon	18528832	18528920	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	intron	18528921	18529064	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	CDS	18529065	18529138	1	-	1	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	exon	18529065	18529138	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	intron	18529139	18529276	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	CDS	18529277	18529443	1	-	0	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	exon	18529277	18529443	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	intron	18529444	18529587	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	CDS	18529588	18529682	1	-	2	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	exon	18529588	18529682	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	intron	18529683	18529835	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	CDS	18529836	18529860	1	-	0	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	exon	18529836	18529860	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	intron	18529861	18529973	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	CDS	18529974	18530069	0.89	-	0	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	exon	18529974	18530069	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	intron	18530070	18530271	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	CDS	18530272	18530331	1	-	0	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	exon	18530272	18530331	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	intron	18530332	18530449	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	CDS	18530450	18530647	0.99	-	0	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	exon	18530450	18530647	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	intron	18530648	18530750	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	CDS	18530751	18531581	0.89	-	0	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	exon	18530751	18531581	.	-	.	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
Ledus.S2	AUGUSTUS	start_codon	18531579	18531581	.	-	0	transcript_id "Ledus.S2G239400.t1"; gene_id "Ledus.S2G239400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9029.t1 is derived from g10059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3935222	3935794	.	+	.	Ledus.S3G050600
Ledus.S3	AUGUSTUS	transcript	3935222	3935794	.	+	.	transcript_id "Ledus.S3G050600.t1"; gene_id "Ledus.S3G050600"
Ledus.S3	AUGUSTUS	start_codon	3935222	3935224	.	+	0	transcript_id "Ledus.S3G050600.t1"; gene_id "Ledus.S3G050600"
Ledus.S3	AUGUSTUS	CDS	3935222	3935794	0.97	+	0	transcript_id "Ledus.S3G050600.t1"; gene_id "Ledus.S3G050600"
Ledus.S3	AUGUSTUS	exon	3935222	3935794	.	+	.	transcript_id "Ledus.S3G050600.t1"; gene_id "Ledus.S3G050600"
Ledus.S3	AUGUSTUS	stop_codon	3935795	3935797	.	+	0	transcript_id "Ledus.S3G050600.t1"; gene_id "Ledus.S3G050600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10658.t1 is derived from g11688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16886256	16887453	.	+	.	Ledus.S3G213500
Ledus.S3	AUGUSTUS	transcript	16886256	16887453	.	+	.	transcript_id "Ledus.S3G213500.t1"; gene_id "Ledus.S3G213500"
Ledus.S3	AUGUSTUS	start_codon	16886256	16886258	.	+	0	transcript_id "Ledus.S3G213500.t1"; gene_id "Ledus.S3G213500"
Ledus.S3	AUGUSTUS	CDS	16886256	16887110	0.58	+	0	transcript_id "Ledus.S3G213500.t1"; gene_id "Ledus.S3G213500"
Ledus.S3	AUGUSTUS	exon	16886256	16887110	.	+	.	transcript_id "Ledus.S3G213500.t1"; gene_id "Ledus.S3G213500"
Ledus.S3	AUGUSTUS	intron	16887111	16887212	.	+	.	transcript_id "Ledus.S3G213500.t1"; gene_id "Ledus.S3G213500"
Ledus.S3	AUGUSTUS	CDS	16887213	16887255	1	+	0	transcript_id "Ledus.S3G213500.t1"; gene_id "Ledus.S3G213500"
Ledus.S3	AUGUSTUS	exon	16887213	16887255	.	+	.	transcript_id "Ledus.S3G213500.t1"; gene_id "Ledus.S3G213500"
Ledus.S3	AUGUSTUS	intron	16887256	16887409	.	+	.	transcript_id "Ledus.S3G213500.t1"; gene_id "Ledus.S3G213500"
Ledus.S3	AUGUSTUS	CDS	16887410	16887453	1	+	2	transcript_id "Ledus.S3G213500.t1"; gene_id "Ledus.S3G213500"
Ledus.S3	AUGUSTUS	exon	16887410	16887453	.	+	.	transcript_id "Ledus.S3G213500.t1"; gene_id "Ledus.S3G213500"
Ledus.S3	AUGUSTUS	stop_codon	16887454	16887456	.	+	0	transcript_id "Ledus.S3G213500.t1"; gene_id "Ledus.S3G213500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10431.t1 is derived from g11461.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15086728	15088480	.	+	.	Ledus.S3G190800
Ledus.S3	AUGUSTUS	transcript	15086728	15088480	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	start_codon	15086728	15086730	.	+	0	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	CDS	15086728	15086934	0.62	+	0	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	exon	15086728	15086934	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	intron	15086935	15087039	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	CDS	15087040	15087361	0.97	+	0	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	exon	15087040	15087361	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	intron	15087362	15087456	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	CDS	15087457	15087564	1	+	2	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	exon	15087457	15087564	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	intron	15087565	15087704	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	CDS	15087705	15087766	1	+	2	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	exon	15087705	15087766	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	intron	15087767	15087843	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	CDS	15087844	15087932	1	+	0	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	exon	15087844	15087932	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	intron	15087933	15088020	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	CDS	15088021	15088115	1	+	1	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	exon	15088021	15088115	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	intron	15088116	15088194	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	CDS	15088195	15088320	1	+	2	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	exon	15088195	15088320	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	intron	15088321	15088400	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	CDS	15088401	15088480	0.51	+	2	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	exon	15088401	15088480	.	+	.	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
Ledus.S3	AUGUSTUS	stop_codon	15088481	15088483	.	+	0	transcript_id "Ledus.S3G190800.t1"; gene_id "Ledus.S3G190800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7662.t1 is derived from g12333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4894193	4894555	.	-	.	Ledus.S5G044000
Ledus.S5	AUGUSTUS	transcript	4894193	4894555	.	-	.	transcript_id "Ledus.S5G044000.t1"; gene_id "Ledus.S5G044000"
Ledus.S5	AUGUSTUS	stop_codon	4894190	4894192	.	-	0	transcript_id "Ledus.S5G044000.t1"; gene_id "Ledus.S5G044000"
Ledus.S5	AUGUSTUS	CDS	4894193	4894555	0.71	-	0	transcript_id "Ledus.S5G044000.t1"; gene_id "Ledus.S5G044000"
Ledus.S5	AUGUSTUS	exon	4894193	4894555	.	-	.	transcript_id "Ledus.S5G044000.t1"; gene_id "Ledus.S5G044000"
Ledus.S5	AUGUSTUS	start_codon	4894553	4894555	.	-	0	transcript_id "Ledus.S5G044000.t1"; gene_id "Ledus.S5G044000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9966.t1 is derived from g10996.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11596867	11601294	.	+	.	Ledus.S3G144300
Ledus.S3	AUGUSTUS	transcript	11596867	11601294	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	start_codon	11596867	11596869	.	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11596867	11596965	0.96	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11596867	11596965	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11596966	11597078	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11597079	11597167	0.83	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11597079	11597167	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11597168	11597270	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11597271	11597385	1	+	1	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11597271	11597385	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11597386	11597481	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11597482	11597632	0.92	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11597482	11597632	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11597633	11597746	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11597747	11597838	0.89	+	2	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11597747	11597838	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11597839	11597927	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11597928	11598023	0.79	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11597928	11598023	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11598024	11598130	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11598131	11598273	0.89	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11598131	11598273	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11598274	11598366	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11598367	11598451	1	+	1	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11598367	11598451	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11598452	11598516	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11598517	11598599	1	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11598517	11598599	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11598600	11598678	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11598679	11598789	0.98	+	1	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11598679	11598789	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11598790	11599111	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11599112	11599133	1	+	1	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11599112	11599133	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11599134	11599403	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11599404	11599417	0.62	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11599404	11599417	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11599418	11599669	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11599670	11599781	0.81	+	1	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11599670	11599781	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11599782	11599882	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11599883	11599940	1	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11599883	11599940	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11599941	11600067	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11600068	11600120	1	+	2	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11600068	11600120	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11600121	11600213	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11600214	11600469	0.69	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11600214	11600469	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11600470	11600572	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11600573	11600711	1	+	2	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11600573	11600711	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11600712	11600799	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11600800	11600860	1	+	1	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11600800	11600860	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11600861	11600954	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11600955	11601083	1	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11600955	11601083	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	intron	11601084	11601174	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	CDS	11601175	11601294	0.98	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	exon	11601175	11601294	.	+	.	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
Ledus.S3	AUGUSTUS	stop_codon	11601295	11601297	.	+	0	transcript_id "Ledus.S3G144300.t1"; gene_id "Ledus.S3G144300"
# This transcript jg11929.t2 is derived from g5548.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11930.t1 is derived from g5549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7849742	7850936	.	+	.	Ledus.S4G108600
Ledus.S4	AUGUSTUS	transcript	7849742	7850936	.	+	.	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	start_codon	7849742	7849744	.	+	0	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	CDS	7849742	7849744	1	+	0	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	exon	7849742	7849744	.	+	.	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	intron	7849745	7849966	.	+	.	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	CDS	7849967	7850006	1	+	0	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	exon	7849967	7850006	.	+	.	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	intron	7850007	7850095	.	+	.	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	CDS	7850096	7850184	1	+	2	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	exon	7850096	7850184	.	+	.	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	intron	7850185	7850704	.	+	.	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	CDS	7850705	7850787	1	+	0	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	exon	7850705	7850787	.	+	.	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	intron	7850788	7850875	.	+	.	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	CDS	7850876	7850936	1	+	1	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	exon	7850876	7850936	.	+	.	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
Ledus.S4	AUGUSTUS	stop_codon	7850937	7850939	.	+	0	transcript_id "Ledus.S4G108600.t1"; gene_id "Ledus.S4G108600"
# This transcript jg4704.t2 is derived from g2142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4705.t1 is derived from g2143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19138158	19140296	.	+	.	Ledus.S1G212600
Ledus.S1	AUGUSTUS	transcript	19138158	19140296	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	start_codon	19138158	19138160	.	+	0	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	CDS	19138158	19138184	1	+	0	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	exon	19138158	19138184	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	intron	19138185	19138346	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	CDS	19138347	19138416	1	+	0	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	exon	19138347	19138416	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	intron	19138417	19138513	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	CDS	19138514	19138662	1	+	2	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	exon	19138514	19138662	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	intron	19138663	19138816	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	CDS	19138817	19138918	1	+	0	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	exon	19138817	19138918	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	intron	19138919	19139057	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	CDS	19139058	19139258	1	+	0	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	exon	19139058	19139258	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	intron	19139259	19139479	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	CDS	19139480	19139542	1	+	0	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	exon	19139480	19139542	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	intron	19139543	19139642	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	CDS	19139643	19139825	1	+	0	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	exon	19139643	19139825	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	intron	19139826	19139961	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	CDS	19139962	19140036	1	+	0	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	exon	19139962	19140036	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	intron	19140037	19140173	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	CDS	19140174	19140296	0.75	+	0	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	exon	19140174	19140296	.	+	.	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
Ledus.S1	AUGUSTUS	stop_codon	19140297	19140299	.	+	0	transcript_id "Ledus.S1G212600.t1"; gene_id "Ledus.S1G212600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg13042.t1 is derived from g6852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3919879	3921659	.	-	.	Ledus.S6G010400
Ledus.S6	AUGUSTUS	transcript	3919879	3921659	.	-	.	transcript_id "Ledus.S6G010400.t1"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	stop_codon	3919876	3919878	.	-	0	transcript_id "Ledus.S6G010400.t1"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	CDS	3919879	3921360	0.94	-	0	transcript_id "Ledus.S6G010400.t1"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	exon	3919879	3921360	.	-	.	transcript_id "Ledus.S6G010400.t1"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	intron	3921361	3921536	.	-	.	transcript_id "Ledus.S6G010400.t1"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	CDS	3921537	3921659	0.99	-	0	transcript_id "Ledus.S6G010400.t1"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	exon	3921537	3921659	.	-	.	transcript_id "Ledus.S6G010400.t1"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	start_codon	3921657	3921659	.	-	0	transcript_id "Ledus.S6G010400.t1"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	transcript	3919879	3921571	.	-	.	transcript_id "Ledus.S6G010400.t2"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	stop_codon	3919876	3919878	.	-	0	transcript_id "Ledus.S6G010400.t2"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	CDS	3919879	3921379	0.79	-	1	transcript_id "Ledus.S6G010400.t2"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	exon	3919879	3921379	.	-	.	transcript_id "Ledus.S6G010400.t2"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	intron	3921380	3921536	.	-	.	transcript_id "Ledus.S6G010400.t2"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	CDS	3921537	3921571	0.74	-	0	transcript_id "Ledus.S6G010400.t2"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	exon	3921537	3921571	.	-	.	transcript_id "Ledus.S6G010400.t2"; gene_id "Ledus.S6G010400"
Ledus.S6	AUGUSTUS	start_codon	3921569	3921571	.	-	0	transcript_id "Ledus.S6G010400.t2"; gene_id "Ledus.S6G010400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11010.t1 is derived from g4628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1088636	1089245	.	-	.	Ledus.S4G016600
Ledus.S4	AUGUSTUS	transcript	1088636	1089245	.	-	.	transcript_id "Ledus.S4G016600.t1"; gene_id "Ledus.S4G016600"
Ledus.S4	AUGUSTUS	stop_codon	1088633	1088635	.	-	0	transcript_id "Ledus.S4G016600.t1"; gene_id "Ledus.S4G016600"
Ledus.S4	AUGUSTUS	CDS	1088636	1088994	0.79	-	2	transcript_id "Ledus.S4G016600.t1"; gene_id "Ledus.S4G016600"
Ledus.S4	AUGUSTUS	exon	1088636	1088994	.	-	.	transcript_id "Ledus.S4G016600.t1"; gene_id "Ledus.S4G016600"
Ledus.S4	AUGUSTUS	intron	1088995	1089055	.	-	.	transcript_id "Ledus.S4G016600.t1"; gene_id "Ledus.S4G016600"
Ledus.S4	AUGUSTUS	CDS	1089056	1089065	0.79	-	0	transcript_id "Ledus.S4G016600.t1"; gene_id "Ledus.S4G016600"
Ledus.S4	AUGUSTUS	exon	1089056	1089065	.	-	.	transcript_id "Ledus.S4G016600.t1"; gene_id "Ledus.S4G016600"
Ledus.S4	AUGUSTUS	intron	1089066	1089239	.	-	.	transcript_id "Ledus.S4G016600.t1"; gene_id "Ledus.S4G016600"
Ledus.S4	AUGUSTUS	CDS	1089240	1089245	0.21	-	0	transcript_id "Ledus.S4G016600.t1"; gene_id "Ledus.S4G016600"
Ledus.S4	AUGUSTUS	exon	1089240	1089245	.	-	.	transcript_id "Ledus.S4G016600.t1"; gene_id "Ledus.S4G016600"
Ledus.S4	AUGUSTUS	start_codon	1089243	1089245	.	-	0	transcript_id "Ledus.S4G016600.t1"; gene_id "Ledus.S4G016600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6311.t1 is derived from g3754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30442326	30444414	.	-	.	Ledus.S1G373200
Ledus.S1	AUGUSTUS	transcript	30442326	30444414	.	-	.	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	stop_codon	30442323	30442325	.	-	0	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	CDS	30442326	30443755	0.93	-	2	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	exon	30442326	30443755	.	-	.	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	intron	30443756	30443822	.	-	.	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	CDS	30443823	30443877	0.93	-	0	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	exon	30443823	30443877	.	-	.	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	intron	30443878	30444032	.	-	.	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	CDS	30444033	30444248	1	-	0	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	exon	30444033	30444248	.	-	.	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	intron	30444249	30444408	.	-	.	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	CDS	30444409	30444414	0.8	-	0	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	exon	30444409	30444414	.	-	.	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
Ledus.S1	AUGUSTUS	start_codon	30444412	30444414	.	-	0	transcript_id "Ledus.S1G373200.t1"; gene_id "Ledus.S1G373200"
# This transcript jg2716.t2 is derived from g149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2717.t1 is derived from g150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2504877	2508436	.	+	.	Ledus.S1G013800
Ledus.S1	AUGUSTUS	transcript	2504877	2508436	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	start_codon	2504877	2504879	.	+	0	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2504877	2505037	0.94	+	0	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2504877	2505037	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2505038	2505147	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2505148	2505275	0.95	+	1	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2505148	2505275	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2505276	2505570	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2505571	2505700	1	+	2	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2505571	2505700	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2505701	2505875	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2505876	2505957	1	+	1	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2505876	2505957	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2505958	2506054	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2506055	2506125	1	+	0	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2506055	2506125	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2506126	2506251	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2506252	2506293	0.99	+	1	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2506252	2506293	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2506294	2506422	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2506423	2506547	0.97	+	1	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2506423	2506547	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2506548	2506664	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2506665	2506758	0.99	+	2	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2506665	2506758	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2506759	2506877	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2506878	2507079	1	+	1	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2506878	2507079	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2507080	2507169	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2507170	2507384	1	+	0	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2507170	2507384	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2507385	2507495	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2507496	2507601	0.97	+	1	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2507496	2507601	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2507602	2507686	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2507687	2507773	0.98	+	0	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2507687	2507773	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2507774	2507877	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2507878	2507952	0.8	+	0	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2507878	2507952	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2507953	2508173	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2508174	2508305	0.95	+	0	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2508174	2508305	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	intron	2508306	2508403	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	CDS	2508404	2508436	0.92	+	0	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	exon	2508404	2508436	.	+	.	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
Ledus.S1	AUGUSTUS	stop_codon	2508437	2508439	.	+	0	transcript_id "Ledus.S1G013800.t1"; gene_id "Ledus.S1G013800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4692.t1 is derived from g2130.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19063044	19063942	.	-	.	Ledus.S1G211300
Ledus.S1	AUGUSTUS	transcript	19063044	19063942	.	-	.	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	stop_codon	19063041	19063043	.	-	0	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	CDS	19063044	19063089	1	-	1	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	exon	19063044	19063089	.	-	.	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	intron	19063090	19063174	.	-	.	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	CDS	19063175	19063235	1	-	2	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	exon	19063175	19063235	.	-	.	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	intron	19063236	19063311	.	-	.	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	CDS	19063312	19063504	0.58	-	0	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	exon	19063312	19063504	.	-	.	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	intron	19063505	19063574	.	-	.	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	CDS	19063575	19063782	0.37	-	1	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	exon	19063575	19063782	.	-	.	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	intron	19063783	19063895	.	-	.	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	CDS	19063896	19063942	0.48	-	0	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	exon	19063896	19063942	.	-	.	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
Ledus.S1	AUGUSTUS	start_codon	19063940	19063942	.	-	0	transcript_id "Ledus.S1G211300.t1"; gene_id "Ledus.S1G211300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg447.t1 is derived from g7308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2655832	2660131	.	-	.	Ledus.S2G032900
Ledus.S2	AUGUSTUS	transcript	2655832	2660131	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	stop_codon	2655829	2655831	.	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2655832	2655918	0.62	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2655832	2655918	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2655919	2656013	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2656014	2656052	1	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2656014	2656052	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2656053	2656151	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2656152	2656280	1	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2656152	2656280	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2656281	2656362	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2656363	2656432	1	-	1	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2656363	2656432	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2656433	2656513	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2656514	2656607	1	-	2	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2656514	2656607	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2656608	2656719	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2656720	2656876	1	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2656720	2656876	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2656877	2657162	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2657163	2657366	1	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2657163	2657366	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2657367	2657461	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2657462	2657611	0.73	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2657462	2657611	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2657612	2657723	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2657724	2657895	1	-	1	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2657724	2657895	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2657896	2658088	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2658089	2658336	1	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2658089	2658336	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2658337	2658425	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2658426	2658557	0.99	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2658426	2658557	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2658558	2658669	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2658670	2658762	0.9	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2658670	2658762	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2658763	2658907	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2658908	2659105	1	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2658908	2659105	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2659106	2659276	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2659277	2659437	1	-	2	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2659277	2659437	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2659438	2659521	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2659522	2659621	1	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2659522	2659621	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	intron	2659622	2659750	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	CDS	2659751	2660131	0.97	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	exon	2659751	2660131	.	-	.	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
Ledus.S2	AUGUSTUS	start_codon	2660129	2660131	.	-	0	transcript_id "Ledus.S2G032900.t1"; gene_id "Ledus.S2G032900"
# This transcript jg6404.t2 is derived from g3847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6405.t1 is derived from g3848.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31072449	31072697	.	+	.	Ledus.S1G382600
Ledus.S1	AUGUSTUS	transcript	31072449	31072697	.	+	.	transcript_id "Ledus.S1G382600.t1"; gene_id "Ledus.S1G382600"
Ledus.S1	AUGUSTUS	start_codon	31072449	31072451	.	+	0	transcript_id "Ledus.S1G382600.t1"; gene_id "Ledus.S1G382600"
Ledus.S1	AUGUSTUS	CDS	31072449	31072697	1	+	0	transcript_id "Ledus.S1G382600.t1"; gene_id "Ledus.S1G382600"
Ledus.S1	AUGUSTUS	exon	31072449	31072697	.	+	.	transcript_id "Ledus.S1G382600.t1"; gene_id "Ledus.S1G382600"
Ledus.S1	AUGUSTUS	stop_codon	31072698	31072700	.	+	0	transcript_id "Ledus.S1G382600.t1"; gene_id "Ledus.S1G382600"
Ledus.S1	AUGUSTUS	transcript	31072488	31072697	.	+	.	transcript_id "Ledus.S1G382600.t2"; gene_id "Ledus.S1G382600"
Ledus.S1	AUGUSTUS	start_codon	31072488	31072490	.	+	0	transcript_id "Ledus.S1G382600.t2"; gene_id "Ledus.S1G382600"
Ledus.S1	AUGUSTUS	CDS	31072488	31072697	1	+	0	transcript_id "Ledus.S1G382600.t2"; gene_id "Ledus.S1G382600"
Ledus.S1	AUGUSTUS	exon	31072488	31072697	.	+	.	transcript_id "Ledus.S1G382600.t2"; gene_id "Ledus.S1G382600"
Ledus.S1	AUGUSTUS	stop_codon	31072698	31072700	.	+	0	transcript_id "Ledus.S1G382600.t2"; gene_id "Ledus.S1G382600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1586.t1 is derived from g8447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11146800	11147829	.	-	.	Ledus.S2G146800
Ledus.S2	AUGUSTUS	transcript	11146800	11147829	.	-	.	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	stop_codon	11146797	11146799	.	-	0	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	CDS	11146800	11147102	1	-	0	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	exon	11146800	11147102	.	-	.	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	intron	11147103	11147175	.	-	.	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	CDS	11147176	11147307	1	-	0	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	exon	11147176	11147307	.	-	.	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	intron	11147308	11147387	.	-	.	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	CDS	11147388	11147531	1	-	0	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	exon	11147388	11147531	.	-	.	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	intron	11147532	11147598	.	-	.	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	CDS	11147599	11147829	0.82	-	0	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	exon	11147599	11147829	.	-	.	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
Ledus.S2	AUGUSTUS	start_codon	11147827	11147829	.	-	0	transcript_id "Ledus.S2G146800.t1"; gene_id "Ledus.S2G146800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10098.t1 is derived from g11128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12614017	12615769	.	-	.	Ledus.S3G157500
Ledus.S3	AUGUSTUS	transcript	12614017	12615769	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	stop_codon	12614014	12614016	.	-	0	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	CDS	12614017	12614025	0.98	-	0	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	exon	12614017	12614025	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	intron	12614026	12614295	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	CDS	12614296	12614389	0.98	-	1	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	exon	12614296	12614389	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	intron	12614390	12614474	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	CDS	12614475	12614522	1	-	1	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	exon	12614475	12614522	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	intron	12614523	12614625	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	CDS	12614626	12614723	1	-	0	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	exon	12614626	12614723	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	intron	12614724	12614886	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	CDS	12614887	12614932	1	-	1	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	exon	12614887	12614932	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	intron	12614933	12615045	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	CDS	12615046	12615173	1	-	0	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	exon	12615046	12615173	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	intron	12615174	12615282	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	CDS	12615283	12615369	1	-	0	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	exon	12615283	12615369	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	intron	12615370	12615679	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	CDS	12615680	12615769	0.67	-	0	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	exon	12615680	12615769	.	-	.	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
Ledus.S3	AUGUSTUS	start_codon	12615767	12615769	.	-	0	transcript_id "Ledus.S3G157500.t1"; gene_id "Ledus.S3G157500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg581.t1 is derived from g7442.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3443574	3446410	.	+	.	Ledus.S2G046300
Ledus.S2	AUGUSTUS	transcript	3443574	3446410	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	start_codon	3443574	3443576	.	+	0	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3443574	3443709	0.58	+	0	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3443574	3443709	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3443710	3443825	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3443826	3443867	1	+	2	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3443826	3443867	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3443868	3444001	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3444002	3444093	1	+	2	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3444002	3444093	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3444094	3444259	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3444260	3444347	1	+	0	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3444260	3444347	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3444348	3444444	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3444445	3444530	1	+	2	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3444445	3444530	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3444531	3444656	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3444657	3444743	1	+	0	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3444657	3444743	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3444744	3444842	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3444843	3444908	1	+	0	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3444843	3444908	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3444909	3444993	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3444994	3445077	1	+	0	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3444994	3445077	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3445078	3445231	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3445232	3445293	1	+	0	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3445232	3445293	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3445294	3445466	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3445467	3445542	1	+	1	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3445467	3445542	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3445543	3445629	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3445630	3445692	1	+	0	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3445630	3445692	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3445693	3445783	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3445784	3445865	1	+	0	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3445784	3445865	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3445866	3446002	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3446003	3446079	1	+	2	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3446003	3446079	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3446080	3446217	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3446218	3446265	1	+	0	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3446218	3446265	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	intron	3446266	3446350	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	CDS	3446351	3446410	0.67	+	0	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	exon	3446351	3446410	.	+	.	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
Ledus.S2	AUGUSTUS	stop_codon	3446411	3446413	.	+	0	transcript_id "Ledus.S2G046300.t1"; gene_id "Ledus.S2G046300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12472.t1 is derived from g6093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12187137	12188970	.	+	.	Ledus.S4G162800
Ledus.S4	AUGUSTUS	transcript	12187137	12188970	.	+	.	transcript_id "Ledus.S4G162800.t1"; gene_id "Ledus.S4G162800"
Ledus.S4	AUGUSTUS	start_codon	12187137	12187139	.	+	0	transcript_id "Ledus.S4G162800.t1"; gene_id "Ledus.S4G162800"
Ledus.S4	AUGUSTUS	CDS	12187137	12188252	0.99	+	0	transcript_id "Ledus.S4G162800.t1"; gene_id "Ledus.S4G162800"
Ledus.S4	AUGUSTUS	exon	12187137	12188252	.	+	.	transcript_id "Ledus.S4G162800.t1"; gene_id "Ledus.S4G162800"
Ledus.S4	AUGUSTUS	intron	12188253	12188341	.	+	.	transcript_id "Ledus.S4G162800.t1"; gene_id "Ledus.S4G162800"
Ledus.S4	AUGUSTUS	CDS	12188342	12188537	1	+	0	transcript_id "Ledus.S4G162800.t1"; gene_id "Ledus.S4G162800"
Ledus.S4	AUGUSTUS	exon	12188342	12188537	.	+	.	transcript_id "Ledus.S4G162800.t1"; gene_id "Ledus.S4G162800"
Ledus.S4	AUGUSTUS	intron	12188538	12188626	.	+	.	transcript_id "Ledus.S4G162800.t1"; gene_id "Ledus.S4G162800"
Ledus.S4	AUGUSTUS	CDS	12188627	12188970	1	+	2	transcript_id "Ledus.S4G162800.t1"; gene_id "Ledus.S4G162800"
Ledus.S4	AUGUSTUS	exon	12188627	12188970	.	+	.	transcript_id "Ledus.S4G162800.t1"; gene_id "Ledus.S4G162800"
Ledus.S4	AUGUSTUS	stop_codon	12188971	12188973	.	+	0	transcript_id "Ledus.S4G162800.t1"; gene_id "Ledus.S4G162800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7155.t1 is derived from g6686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1827433	1830491	.	-	.	Ledus.C7G021600
Ledus.C7	AUGUSTUS	transcript	1827433	1830491	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	stop_codon	1827430	1827432	.	-	0	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	CDS	1827433	1827533	0.76	-	2	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	exon	1827433	1827533	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	intron	1827534	1827619	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	CDS	1827620	1827755	0.99	-	0	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	exon	1827620	1827755	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	intron	1827756	1827858	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	CDS	1827859	1827970	0.98	-	1	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	exon	1827859	1827970	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	intron	1827971	1828074	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	CDS	1828075	1828187	0.84	-	0	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	exon	1828075	1828187	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	intron	1828188	1828299	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	CDS	1828300	1828560	0.66	-	0	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	exon	1828300	1828560	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	intron	1828561	1828947	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	CDS	1828948	1830150	0.44	-	0	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	exon	1828948	1830150	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	intron	1830151	1830248	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	CDS	1830249	1830338	0.64	-	0	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	exon	1830249	1830338	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	intron	1830339	1830440	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	CDS	1830441	1830491	0.89	-	0	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	exon	1830441	1830491	.	-	.	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
Ledus.C7	AUGUSTUS	start_codon	1830489	1830491	.	-	0	transcript_id "Ledus.C7G021600.t1"; gene_id "Ledus.C7G021600"
# This transcript jg682.t2 is derived from g7543.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg682.t3 is derived from g7543.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg683.t1 is derived from g7545.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4174633	4179173	.	+	.	Ledus.S2G056600
Ledus.S2	AUGUSTUS	transcript	4175419	4179173	.	+	.	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	start_codon	4175419	4175421	.	+	0	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4175419	4175576	0.83	+	0	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4175419	4175576	.	+	.	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4175577	4175658	.	+	.	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4175659	4175732	0.98	+	1	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4175659	4175732	.	+	.	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4175733	4175822	.	+	.	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4175823	4176365	0.76	+	2	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4175823	4176365	.	+	.	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4176366	4176489	.	+	.	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4176490	4178285	0.98	+	2	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4176490	4178285	.	+	.	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4178286	4178446	.	+	.	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4178447	4178758	1	+	0	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4178447	4178758	.	+	.	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4178759	4178957	.	+	.	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4178958	4179173	0.85	+	0	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4178958	4179173	.	+	.	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	stop_codon	4179174	4179176	.	+	0	transcript_id "Ledus.S2G056600.t1"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	transcript	4175419	4179173	.	+	.	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	start_codon	4175419	4175421	.	+	0	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4175419	4175732	0.97	+	0	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4175419	4175732	.	+	.	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4175733	4175859	.	+	.	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4175860	4176365	0.75	+	1	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4175860	4176365	.	+	.	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4176366	4176489	.	+	.	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4176490	4178285	0.96	+	2	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4176490	4178285	.	+	.	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4178286	4178446	.	+	.	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4178447	4178758	1	+	0	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4178447	4178758	.	+	.	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4178759	4178957	.	+	.	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4178958	4179173	0.76	+	0	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4178958	4179173	.	+	.	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	stop_codon	4179174	4179176	.	+	0	transcript_id "Ledus.S2G056600.t2"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	transcript	4174633	4179173	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	start_codon	4174633	4174635	.	+	0	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4174633	4175089	0.39	+	0	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4174633	4175089	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4175090	4175386	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4175387	4175576	0.84	+	2	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4175387	4175576	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4175577	4175658	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4175659	4175732	0.98	+	1	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4175659	4175732	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4175733	4175822	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4175823	4176365	0.83	+	2	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4175823	4176365	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4176366	4176489	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4176490	4178285	0.99	+	2	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4176490	4178285	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4178286	4178446	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4178447	4178758	1	+	0	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4178447	4178758	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	intron	4178759	4178957	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	CDS	4178958	4179173	0.82	+	0	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	exon	4178958	4179173	.	+	.	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
Ledus.S2	AUGUSTUS	stop_codon	4179174	4179176	.	+	0	transcript_id "Ledus.S2G056600.t3"; gene_id "Ledus.S2G056600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9909.t1 is derived from g10939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11115984	11117433	.	+	.	Ledus.S3G138600
Ledus.S3	AUGUSTUS	transcript	11115984	11117433	.	+	.	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	start_codon	11115984	11115986	.	+	0	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	CDS	11115984	11116128	1	+	0	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	exon	11115984	11116128	.	+	.	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	intron	11116129	11116221	.	+	.	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	CDS	11116222	11116427	1	+	2	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	exon	11116222	11116427	.	+	.	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	intron	11116428	11116627	.	+	.	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	CDS	11116628	11116981	1	+	0	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	exon	11116628	11116981	.	+	.	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	intron	11116982	11117061	.	+	.	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	CDS	11117062	11117198	1	+	0	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	exon	11117062	11117198	.	+	.	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	intron	11117199	11117297	.	+	.	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	CDS	11117298	11117433	1	+	1	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	exon	11117298	11117433	.	+	.	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
Ledus.S3	AUGUSTUS	stop_codon	11117434	11117436	.	+	0	transcript_id "Ledus.S3G138600.t1"; gene_id "Ledus.S3G138600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12056.t1 is derived from g5675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9253183	9253714	.	+	.	Ledus.S4G121200
Ledus.S4	AUGUSTUS	transcript	9253183	9253714	.	+	.	transcript_id "Ledus.S4G121200.t1"; gene_id "Ledus.S4G121200"
Ledus.S4	AUGUSTUS	start_codon	9253183	9253185	.	+	0	transcript_id "Ledus.S4G121200.t1"; gene_id "Ledus.S4G121200"
Ledus.S4	AUGUSTUS	CDS	9253183	9253231	0.82	+	0	transcript_id "Ledus.S4G121200.t1"; gene_id "Ledus.S4G121200"
Ledus.S4	AUGUSTUS	exon	9253183	9253231	.	+	.	transcript_id "Ledus.S4G121200.t1"; gene_id "Ledus.S4G121200"
Ledus.S4	AUGUSTUS	intron	9253232	9253301	.	+	.	transcript_id "Ledus.S4G121200.t1"; gene_id "Ledus.S4G121200"
Ledus.S4	AUGUSTUS	CDS	9253302	9253714	0.91	+	2	transcript_id "Ledus.S4G121200.t1"; gene_id "Ledus.S4G121200"
Ledus.S4	AUGUSTUS	exon	9253302	9253714	.	+	.	transcript_id "Ledus.S4G121200.t1"; gene_id "Ledus.S4G121200"
Ledus.S4	AUGUSTUS	stop_codon	9253715	9253717	.	+	0	transcript_id "Ledus.S4G121200.t1"; gene_id "Ledus.S4G121200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9948.t1 is derived from g10978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11432644	11434194	.	+	.	Ledus.S3G142500
Ledus.S3	AUGUSTUS	transcript	11432644	11434194	.	+	.	transcript_id "Ledus.S3G142500.t1"; gene_id "Ledus.S3G142500"
Ledus.S3	AUGUSTUS	start_codon	11432644	11432646	.	+	0	transcript_id "Ledus.S3G142500.t1"; gene_id "Ledus.S3G142500"
Ledus.S3	AUGUSTUS	CDS	11432644	11434194	0.97	+	0	transcript_id "Ledus.S3G142500.t1"; gene_id "Ledus.S3G142500"
Ledus.S3	AUGUSTUS	exon	11432644	11434194	.	+	.	transcript_id "Ledus.S3G142500.t1"; gene_id "Ledus.S3G142500"
Ledus.S3	AUGUSTUS	stop_codon	11434195	11434197	.	+	0	transcript_id "Ledus.S3G142500.t1"; gene_id "Ledus.S3G142500"
# This transcript jg1193.t2 is derived from g8054.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1194.t1 is derived from g8055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8457003	8458086	.	+	.	Ledus.S2G107600
Ledus.S2	AUGUSTUS	transcript	8457003	8458086	.	+	.	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	start_codon	8457003	8457005	.	+	0	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	CDS	8457003	8457069	0.99	+	0	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	exon	8457003	8457069	.	+	.	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	intron	8457070	8457191	.	+	.	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	CDS	8457192	8457224	0.95	+	2	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	exon	8457192	8457224	.	+	.	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	intron	8457225	8457315	.	+	.	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	CDS	8457316	8457468	1	+	2	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	exon	8457316	8457468	.	+	.	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	intron	8457469	8457595	.	+	.	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	CDS	8457596	8457705	0.99	+	2	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	exon	8457596	8457705	.	+	.	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	intron	8457706	8457822	.	+	.	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	CDS	8457823	8457965	0.98	+	0	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	exon	8457823	8457965	.	+	.	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	intron	8457966	8458046	.	+	.	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	CDS	8458047	8458086	0.99	+	1	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	exon	8458047	8458086	.	+	.	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
Ledus.S2	AUGUSTUS	stop_codon	8458087	8458089	.	+	0	transcript_id "Ledus.S2G107600.t1"; gene_id "Ledus.S2G107600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8295.t1 is derived from g12966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10539656	10540106	.	+	.	Ledus.S5G107300
Ledus.S5	AUGUSTUS	transcript	10539656	10540106	.	+	.	transcript_id "Ledus.S5G107300.t1"; gene_id "Ledus.S5G107300"
Ledus.S5	AUGUSTUS	start_codon	10539656	10539658	.	+	0	transcript_id "Ledus.S5G107300.t1"; gene_id "Ledus.S5G107300"
Ledus.S5	AUGUSTUS	CDS	10539656	10539724	0.76	+	0	transcript_id "Ledus.S5G107300.t1"; gene_id "Ledus.S5G107300"
Ledus.S5	AUGUSTUS	exon	10539656	10539724	.	+	.	transcript_id "Ledus.S5G107300.t1"; gene_id "Ledus.S5G107300"
Ledus.S5	AUGUSTUS	intron	10539725	10539938	.	+	.	transcript_id "Ledus.S5G107300.t1"; gene_id "Ledus.S5G107300"
Ledus.S5	AUGUSTUS	CDS	10539939	10540106	1	+	0	transcript_id "Ledus.S5G107300.t1"; gene_id "Ledus.S5G107300"
Ledus.S5	AUGUSTUS	exon	10539939	10540106	.	+	.	transcript_id "Ledus.S5G107300.t1"; gene_id "Ledus.S5G107300"
Ledus.S5	AUGUSTUS	stop_codon	10540107	10540109	.	+	0	transcript_id "Ledus.S5G107300.t1"; gene_id "Ledus.S5G107300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg285.t1 is derived from g7146.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1398746	1401351	.	+	.	Ledus.S2G016700
Ledus.S2	AUGUSTUS	transcript	1398746	1401351	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	start_codon	1398746	1398748	.	+	0	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1398746	1398969	0.95	+	0	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1398746	1398969	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	intron	1398970	1399072	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1399073	1399173	0.78	+	1	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1399073	1399173	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	intron	1399174	1399260	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1399261	1399368	1	+	2	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1399261	1399368	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	intron	1399369	1399488	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1399489	1399609	1	+	2	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1399489	1399609	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	intron	1399610	1399736	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1399737	1399854	1	+	1	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1399737	1399854	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	intron	1399855	1399931	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1399932	1400010	0.99	+	0	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1399932	1400010	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	intron	1400011	1400112	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1400113	1400201	1	+	2	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1400113	1400201	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	intron	1400202	1400294	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1400295	1400387	0.97	+	0	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1400295	1400387	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	intron	1400388	1400513	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1400514	1400540	1	+	0	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1400514	1400540	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	intron	1400541	1400628	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1400629	1400721	1	+	0	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1400629	1400721	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	intron	1400722	1400824	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1400825	1400893	1	+	0	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1400825	1400893	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	intron	1400894	1400979	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1400980	1401110	1	+	0	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1400980	1401110	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	intron	1401111	1401197	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	CDS	1401198	1401351	1	+	1	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	exon	1401198	1401351	.	+	.	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
Ledus.S2	AUGUSTUS	stop_codon	1401352	1401354	.	+	0	transcript_id "Ledus.S2G016700.t1"; gene_id "Ledus.S2G016700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5045.t1 is derived from g2484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21298099	21300192	.	-	.	Ledus.S1G246600
Ledus.S1	AUGUSTUS	transcript	21298099	21300192	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	stop_codon	21298096	21298098	.	-	0	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	CDS	21298099	21298109	0.71	-	2	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	exon	21298099	21298109	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	intron	21298110	21298310	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	CDS	21298311	21298449	0.44	-	0	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	exon	21298311	21298449	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	intron	21298450	21298544	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	CDS	21298545	21298661	1	-	0	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	exon	21298545	21298661	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	intron	21298662	21298744	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	CDS	21298745	21298949	1	-	1	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	exon	21298745	21298949	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	intron	21298950	21299030	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	CDS	21299031	21299221	1	-	0	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	exon	21299031	21299221	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	intron	21299222	21299301	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	CDS	21299302	21299394	1	-	0	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	exon	21299302	21299394	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	intron	21299395	21299484	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	CDS	21299485	21299580	1	-	0	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	exon	21299485	21299580	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	intron	21299581	21299655	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	CDS	21299656	21299915	1	-	2	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	exon	21299656	21299915	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	intron	21299916	21300170	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	CDS	21300171	21300192	0.96	-	0	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	exon	21300171	21300192	.	-	.	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
Ledus.S1	AUGUSTUS	start_codon	21300190	21300192	.	-	0	transcript_id "Ledus.S1G246600.t1"; gene_id "Ledus.S1G246600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg29.t1 is derived from g6458.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C17	AUGUSTUS	gene	81628	82086	.	+	.	Ledus.C17G000700
Ledus.C17	AUGUSTUS	transcript	81628	82086	.	+	.	transcript_id "Ledus.C17G000700.t1"; gene_id "Ledus.C17G000700"
Ledus.C17	AUGUSTUS	start_codon	81628	81630	.	+	0	transcript_id "Ledus.C17G000700.t1"; gene_id "Ledus.C17G000700"
Ledus.C17	AUGUSTUS	CDS	81628	82086	0.35	+	0	transcript_id "Ledus.C17G000700.t1"; gene_id "Ledus.C17G000700"
Ledus.C17	AUGUSTUS	exon	81628	82086	.	+	.	transcript_id "Ledus.C17G000700.t1"; gene_id "Ledus.C17G000700"
Ledus.C17	AUGUSTUS	stop_codon	82087	82089	.	+	0	transcript_id "Ledus.C17G000700.t1"; gene_id "Ledus.C17G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1651.t1 is derived from g8512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11665088	11665689	.	+	.	Ledus.S2G153300
Ledus.S2	AUGUSTUS	transcript	11665088	11665689	.	+	.	transcript_id "Ledus.S2G153300.t1"; gene_id "Ledus.S2G153300"
Ledus.S2	AUGUSTUS	start_codon	11665088	11665090	.	+	0	transcript_id "Ledus.S2G153300.t1"; gene_id "Ledus.S2G153300"
Ledus.S2	AUGUSTUS	CDS	11665088	11665264	0.65	+	0	transcript_id "Ledus.S2G153300.t1"; gene_id "Ledus.S2G153300"
Ledus.S2	AUGUSTUS	exon	11665088	11665264	.	+	.	transcript_id "Ledus.S2G153300.t1"; gene_id "Ledus.S2G153300"
Ledus.S2	AUGUSTUS	intron	11665265	11665605	.	+	.	transcript_id "Ledus.S2G153300.t1"; gene_id "Ledus.S2G153300"
Ledus.S2	AUGUSTUS	CDS	11665606	11665689	0.72	+	0	transcript_id "Ledus.S2G153300.t1"; gene_id "Ledus.S2G153300"
Ledus.S2	AUGUSTUS	exon	11665606	11665689	.	+	.	transcript_id "Ledus.S2G153300.t1"; gene_id "Ledus.S2G153300"
Ledus.S2	AUGUSTUS	stop_codon	11665690	11665692	.	+	0	transcript_id "Ledus.S2G153300.t1"; gene_id "Ledus.S2G153300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13024.t1 is derived from g6834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3336594	3337202	.	-	.	Ledus.S6G008600
Ledus.S6	AUGUSTUS	transcript	3336594	3337202	.	-	.	transcript_id "Ledus.S6G008600.t1"; gene_id "Ledus.S6G008600"
Ledus.S6	AUGUSTUS	stop_codon	3336591	3336593	.	-	0	transcript_id "Ledus.S6G008600.t1"; gene_id "Ledus.S6G008600"
Ledus.S6	AUGUSTUS	CDS	3336594	3337202	0.61	-	0	transcript_id "Ledus.S6G008600.t1"; gene_id "Ledus.S6G008600"
Ledus.S6	AUGUSTUS	exon	3336594	3337202	.	-	.	transcript_id "Ledus.S6G008600.t1"; gene_id "Ledus.S6G008600"
Ledus.S6	AUGUSTUS	start_codon	3337200	3337202	.	-	0	transcript_id "Ledus.S6G008600.t1"; gene_id "Ledus.S6G008600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5360.t1 is derived from g2799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23652979	23656184	.	-	.	Ledus.S1G278100
Ledus.S1	AUGUSTUS	transcript	23652979	23656184	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	stop_codon	23652976	23652978	.	-	0	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23652979	23653089	0.82	-	0	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23652979	23653089	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	intron	23653090	23653190	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23653191	23653307	0.88	-	0	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23653191	23653307	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	intron	23653308	23653457	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23653458	23653836	1	-	1	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23653458	23653836	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	intron	23653837	23653919	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23653920	23654075	1	-	1	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23653920	23654075	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	intron	23654076	23654161	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23654162	23654298	1	-	0	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23654162	23654298	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	intron	23654299	23654398	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23654399	23654518	1	-	0	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23654399	23654518	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	intron	23654519	23654633	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23654634	23654762	1	-	0	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23654634	23654762	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	intron	23654763	23654860	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23654861	23655054	1	-	2	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23654861	23655054	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	intron	23655055	23655151	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23655152	23655273	0.73	-	1	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23655152	23655273	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	intron	23655274	23655376	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23655377	23655424	0.73	-	1	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23655377	23655424	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	intron	23655425	23655679	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23655680	23655732	0.74	-	0	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23655680	23655732	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	intron	23655733	23655897	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23655898	23656014	0.73	-	0	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23655898	23656014	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	intron	23656015	23656139	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	CDS	23656140	23656184	0.47	-	0	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	exon	23656140	23656184	.	-	.	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
Ledus.S1	AUGUSTUS	start_codon	23656182	23656184	.	-	0	transcript_id "Ledus.S1G278100.t1"; gene_id "Ledus.S1G278100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5730.t1 is derived from g3169.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26291588	26292915	.	+	.	Ledus.S1G315100
Ledus.S1	AUGUSTUS	transcript	26291588	26292915	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	start_codon	26291588	26291590	.	+	0	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	CDS	26291588	26291658	1	+	0	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	exon	26291588	26291658	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	intron	26291659	26291773	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	CDS	26291774	26291847	1	+	1	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	exon	26291774	26291847	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	intron	26291848	26291911	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	CDS	26291912	26291972	1	+	2	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	exon	26291912	26291972	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	intron	26291973	26292090	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	CDS	26292091	26292144	1	+	1	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	exon	26292091	26292144	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	intron	26292145	26292228	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	CDS	26292229	26292308	1	+	1	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	exon	26292229	26292308	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	intron	26292309	26292408	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	CDS	26292409	26292614	1	+	2	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	exon	26292409	26292614	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	intron	26292615	26292714	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	CDS	26292715	26292915	1	+	0	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	exon	26292715	26292915	.	+	.	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
Ledus.S1	AUGUSTUS	stop_codon	26292916	26292918	.	+	0	transcript_id "Ledus.S1G315100.t1"; gene_id "Ledus.S1G315100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8030.t1 is derived from g12701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8591492	8592348	.	-	.	Ledus.S5G080800
Ledus.S5	AUGUSTUS	transcript	8591492	8592348	.	-	.	transcript_id "Ledus.S5G080800.t1"; gene_id "Ledus.S5G080800"
Ledus.S5	AUGUSTUS	stop_codon	8591489	8591491	.	-	0	transcript_id "Ledus.S5G080800.t1"; gene_id "Ledus.S5G080800"
Ledus.S5	AUGUSTUS	CDS	8591492	8591654	0.63	-	1	transcript_id "Ledus.S5G080800.t1"; gene_id "Ledus.S5G080800"
Ledus.S5	AUGUSTUS	exon	8591492	8591654	.	-	.	transcript_id "Ledus.S5G080800.t1"; gene_id "Ledus.S5G080800"
Ledus.S5	AUGUSTUS	intron	8591655	8591730	.	-	.	transcript_id "Ledus.S5G080800.t1"; gene_id "Ledus.S5G080800"
Ledus.S5	AUGUSTUS	CDS	8591731	8591933	0.62	-	0	transcript_id "Ledus.S5G080800.t1"; gene_id "Ledus.S5G080800"
Ledus.S5	AUGUSTUS	exon	8591731	8591933	.	-	.	transcript_id "Ledus.S5G080800.t1"; gene_id "Ledus.S5G080800"
Ledus.S5	AUGUSTUS	intron	8591934	8592024	.	-	.	transcript_id "Ledus.S5G080800.t1"; gene_id "Ledus.S5G080800"
Ledus.S5	AUGUSTUS	CDS	8592025	8592348	0.89	-	0	transcript_id "Ledus.S5G080800.t1"; gene_id "Ledus.S5G080800"
Ledus.S5	AUGUSTUS	exon	8592025	8592348	.	-	.	transcript_id "Ledus.S5G080800.t1"; gene_id "Ledus.S5G080800"
Ledus.S5	AUGUSTUS	start_codon	8592346	8592348	.	-	0	transcript_id "Ledus.S5G080800.t1"; gene_id "Ledus.S5G080800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg875.t1 is derived from g7736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5925333	5933419	.	+	.	Ledus.S2G075700
Ledus.S2	AUGUSTUS	transcript	5925333	5933419	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	start_codon	5925333	5925335	.	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5925333	5925501	0.99	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5925333	5925501	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5925502	5925626	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5925627	5925721	1	+	2	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5925627	5925721	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5925722	5925961	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5925962	5926061	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5925962	5926061	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5926062	5926349	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5926350	5926454	1	+	2	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5926350	5926454	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5926455	5926676	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5926677	5926839	1	+	2	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5926677	5926839	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5926840	5927038	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5927039	5927198	1	+	1	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5927039	5927198	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5927199	5927336	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5927337	5927393	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5927337	5927393	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5927394	5927490	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5927491	5927571	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5927491	5927571	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5927572	5927778	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5927779	5927873	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5927779	5927873	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5927874	5928008	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5928009	5928159	1	+	1	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5928009	5928159	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5928160	5928353	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5928354	5928440	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5928354	5928440	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5928441	5928521	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5928522	5928641	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5928522	5928641	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5928642	5928731	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5928732	5928863	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5928732	5928863	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5928864	5929047	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5929048	5929142	0.99	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5929048	5929142	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5929143	5929247	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5929248	5929371	0.99	+	1	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5929248	5929371	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5929372	5929454	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5929455	5929562	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5929455	5929562	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5929563	5929675	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5929676	5929814	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5929676	5929814	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5929815	5929923	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5929924	5930034	1	+	2	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5929924	5930034	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5930035	5930203	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5930204	5930276	1	+	2	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5930204	5930276	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5930277	5930366	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5930367	5930454	0.57	+	1	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5930367	5930454	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5930455	5930569	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5930570	5930746	0.84	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5930570	5930746	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5930747	5930841	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5930842	5930952	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5930842	5930952	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5930953	5931086	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5931087	5931266	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5931087	5931266	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5931267	5931343	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5931344	5931502	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5931344	5931502	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5931503	5931659	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5931660	5931968	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5931660	5931968	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5931969	5932093	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5932094	5932294	1	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5932094	5932294	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5932295	5932439	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5932440	5932615	0.93	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5932440	5932615	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	intron	5932616	5932737	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	CDS	5932738	5933419	0.9	+	1	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	exon	5932738	5933419	.	+	.	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
Ledus.S2	AUGUSTUS	stop_codon	5933420	5933422	.	+	0	transcript_id "Ledus.S2G075700.t1"; gene_id "Ledus.S2G075700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10326.t1 is derived from g11356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14233591	14234713	.	-	.	Ledus.S3G180300
Ledus.S3	AUGUSTUS	transcript	14233591	14234713	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	stop_codon	14233588	14233590	.	-	0	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	CDS	14233591	14233632	0.59	-	0	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	exon	14233591	14233632	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	intron	14233633	14233736	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	CDS	14233737	14233850	0.64	-	0	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	exon	14233737	14233850	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	intron	14233851	14233938	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	CDS	14233939	14233950	1	-	0	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	exon	14233939	14233950	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	intron	14233951	14234030	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	CDS	14234031	14234042	1	-	0	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	exon	14234031	14234042	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	intron	14234043	14234131	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	CDS	14234132	14234198	1	-	1	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	exon	14234132	14234198	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	intron	14234199	14234291	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	CDS	14234292	14234347	1	-	0	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	exon	14234292	14234347	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	intron	14234348	14234581	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	CDS	14234582	14234713	1	-	0	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	exon	14234582	14234713	.	-	.	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
Ledus.S3	AUGUSTUS	start_codon	14234711	14234713	.	-	0	transcript_id "Ledus.S3G180300.t1"; gene_id "Ledus.S3G180300"
# This transcript jg2528.t1 is derived from g9391.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18598476	18598694	.	+	.	Ledus.S2G241000
Ledus.S2	AUGUSTUS	transcript	18598476	18598694	.	+	.	transcript_id "Ledus.S2G241000.t1"; gene_id "Ledus.S2G241000"
Ledus.S2	AUGUSTUS	start_codon	18598476	18598478	.	+	0	transcript_id "Ledus.S2G241000.t1"; gene_id "Ledus.S2G241000"
Ledus.S2	AUGUSTUS	CDS	18598476	18598694	0.71	+	0	transcript_id "Ledus.S2G241000.t1"; gene_id "Ledus.S2G241000"
Ledus.S2	AUGUSTUS	exon	18598476	18598694	.	+	.	transcript_id "Ledus.S2G241000.t1"; gene_id "Ledus.S2G241000"
Ledus.S2	AUGUSTUS	stop_codon	18598695	18598697	.	+	0	transcript_id "Ledus.S2G241000.t1"; gene_id "Ledus.S2G241000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg805.t1 is derived from g7666.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5218071	5222126	.	-	.	Ledus.S2G068700
Ledus.S2	AUGUSTUS	transcript	5218071	5222126	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	stop_codon	5218068	5218070	.	-	0	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5218071	5218220	0.98	-	0	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5218071	5218220	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5218221	5218311	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5218312	5218369	1	-	1	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5218312	5218369	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5218370	5218480	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5218481	5218551	0.77	-	0	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5218481	5218551	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5218552	5218788	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5218789	5218865	0.98	-	2	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5218789	5218865	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5218866	5218969	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5218970	5219055	1	-	1	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5218970	5219055	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5219056	5219147	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5219148	5219228	1	-	1	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5219148	5219228	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5219229	5219325	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5219326	5219461	0.98	-	2	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5219326	5219461	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5219462	5219573	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5219574	5219644	0.99	-	1	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5219574	5219644	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5219645	5219784	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5219785	5219876	0.94	-	0	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5219785	5219876	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5219877	5219997	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5219998	5220095	0.92	-	2	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5219998	5220095	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5220096	5220297	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5220298	5220450	1	-	2	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5220298	5220450	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5220451	5220638	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5220639	5220807	1	-	0	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5220639	5220807	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5220808	5221052	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5221053	5221604	1	-	0	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5221053	5221604	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5221605	5221702	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5221703	5221784	1	-	1	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5221703	5221784	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	intron	5221785	5221935	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	CDS	5221936	5222126	0.99	-	0	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	exon	5221936	5222126	.	-	.	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
Ledus.S2	AUGUSTUS	start_codon	5222124	5222126	.	-	0	transcript_id "Ledus.S2G068700.t1"; gene_id "Ledus.S2G068700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1012.t1 is derived from g7873.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6770501	6772375	.	-	.	Ledus.S2G089400
Ledus.S2	AUGUSTUS	transcript	6770501	6772375	.	-	.	transcript_id "Ledus.S2G089400.t1"; gene_id "Ledus.S2G089400"
Ledus.S2	AUGUSTUS	stop_codon	6770498	6770500	.	-	0	transcript_id "Ledus.S2G089400.t1"; gene_id "Ledus.S2G089400"
Ledus.S2	AUGUSTUS	CDS	6770501	6772375	0.99	-	0	transcript_id "Ledus.S2G089400.t1"; gene_id "Ledus.S2G089400"
Ledus.S2	AUGUSTUS	exon	6770501	6772375	.	-	.	transcript_id "Ledus.S2G089400.t1"; gene_id "Ledus.S2G089400"
Ledus.S2	AUGUSTUS	start_codon	6772373	6772375	.	-	0	transcript_id "Ledus.S2G089400.t1"; gene_id "Ledus.S2G089400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11016.t1 is derived from g4634.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1131206	1132357	.	+	.	Ledus.S4G017200
Ledus.S4	AUGUSTUS	transcript	1131206	1132357	.	+	.	transcript_id "Ledus.S4G017200.t1"; gene_id "Ledus.S4G017200"
Ledus.S4	AUGUSTUS	start_codon	1131206	1131208	.	+	0	transcript_id "Ledus.S4G017200.t1"; gene_id "Ledus.S4G017200"
Ledus.S4	AUGUSTUS	CDS	1131206	1132357	0.35	+	0	transcript_id "Ledus.S4G017200.t1"; gene_id "Ledus.S4G017200"
Ledus.S4	AUGUSTUS	exon	1131206	1132357	.	+	.	transcript_id "Ledus.S4G017200.t1"; gene_id "Ledus.S4G017200"
Ledus.S4	AUGUSTUS	stop_codon	1132358	1132360	.	+	0	transcript_id "Ledus.S4G017200.t1"; gene_id "Ledus.S4G017200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11182.t1 is derived from g4800.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2485545	2487036	.	+	.	Ledus.S4G033800
Ledus.S4	AUGUSTUS	transcript	2485545	2487036	.	+	.	transcript_id "Ledus.S4G033800.t1"; gene_id "Ledus.S4G033800"
Ledus.S4	AUGUSTUS	start_codon	2485545	2485547	.	+	0	transcript_id "Ledus.S4G033800.t1"; gene_id "Ledus.S4G033800"
Ledus.S4	AUGUSTUS	CDS	2485545	2486514	0.86	+	0	transcript_id "Ledus.S4G033800.t1"; gene_id "Ledus.S4G033800"
Ledus.S4	AUGUSTUS	exon	2485545	2486514	.	+	.	transcript_id "Ledus.S4G033800.t1"; gene_id "Ledus.S4G033800"
Ledus.S4	AUGUSTUS	intron	2486515	2486638	.	+	.	transcript_id "Ledus.S4G033800.t1"; gene_id "Ledus.S4G033800"
Ledus.S4	AUGUSTUS	CDS	2486639	2486772	1	+	2	transcript_id "Ledus.S4G033800.t1"; gene_id "Ledus.S4G033800"
Ledus.S4	AUGUSTUS	exon	2486639	2486772	.	+	.	transcript_id "Ledus.S4G033800.t1"; gene_id "Ledus.S4G033800"
Ledus.S4	AUGUSTUS	intron	2486773	2486841	.	+	.	transcript_id "Ledus.S4G033800.t1"; gene_id "Ledus.S4G033800"
Ledus.S4	AUGUSTUS	CDS	2486842	2487036	0.73	+	0	transcript_id "Ledus.S4G033800.t1"; gene_id "Ledus.S4G033800"
Ledus.S4	AUGUSTUS	exon	2486842	2487036	.	+	.	transcript_id "Ledus.S4G033800.t1"; gene_id "Ledus.S4G033800"
Ledus.S4	AUGUSTUS	stop_codon	2487037	2487039	.	+	0	transcript_id "Ledus.S4G033800.t1"; gene_id "Ledus.S4G033800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7737.t1 is derived from g12408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5765154	5767343	.	-	.	Ledus.S5G051500
Ledus.S5	AUGUSTUS	transcript	5765154	5767343	.	-	.	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	stop_codon	5765151	5765153	.	-	0	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	CDS	5765154	5765877	1	-	1	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	exon	5765154	5765877	.	-	.	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	intron	5765878	5766036	.	-	.	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	CDS	5766037	5766089	0.88	-	0	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	exon	5766037	5766089	.	-	.	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	intron	5766090	5766164	.	-	.	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	CDS	5766165	5766592	0.55	-	2	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	exon	5766165	5766592	.	-	.	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	intron	5766593	5766783	.	-	.	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	CDS	5766784	5766973	0.65	-	0	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	exon	5766784	5766973	.	-	.	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	intron	5766974	5767250	.	-	.	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	CDS	5767251	5767343	0.5	-	0	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	exon	5767251	5767343	.	-	.	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
Ledus.S5	AUGUSTUS	start_codon	5767341	5767343	.	-	0	transcript_id "Ledus.S5G051500.t1"; gene_id "Ledus.S5G051500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2009.t1 is derived from g8872.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14162984	14164630	.	-	.	Ledus.S2G189100
Ledus.S2	AUGUSTUS	transcript	14162984	14164630	.	-	.	transcript_id "Ledus.S2G189100.t1"; gene_id "Ledus.S2G189100"
Ledus.S2	AUGUSTUS	stop_codon	14162981	14162983	.	-	0	transcript_id "Ledus.S2G189100.t1"; gene_id "Ledus.S2G189100"
Ledus.S2	AUGUSTUS	CDS	14162984	14164630	1	-	0	transcript_id "Ledus.S2G189100.t1"; gene_id "Ledus.S2G189100"
Ledus.S2	AUGUSTUS	exon	14162984	14164630	.	-	.	transcript_id "Ledus.S2G189100.t1"; gene_id "Ledus.S2G189100"
Ledus.S2	AUGUSTUS	start_codon	14164628	14164630	.	-	0	transcript_id "Ledus.S2G189100.t1"; gene_id "Ledus.S2G189100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12320.t1 is derived from g5941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11197136	11197551	.	-	.	Ledus.S4G147600
Ledus.S4	AUGUSTUS	transcript	11197136	11197551	.	-	.	transcript_id "Ledus.S4G147600.t1"; gene_id "Ledus.S4G147600"
Ledus.S4	AUGUSTUS	stop_codon	11197133	11197135	.	-	0	transcript_id "Ledus.S4G147600.t1"; gene_id "Ledus.S4G147600"
Ledus.S4	AUGUSTUS	CDS	11197136	11197224	0.97	-	2	transcript_id "Ledus.S4G147600.t1"; gene_id "Ledus.S4G147600"
Ledus.S4	AUGUSTUS	exon	11197136	11197224	.	-	.	transcript_id "Ledus.S4G147600.t1"; gene_id "Ledus.S4G147600"
Ledus.S4	AUGUSTUS	intron	11197225	11197397	.	-	.	transcript_id "Ledus.S4G147600.t1"; gene_id "Ledus.S4G147600"
Ledus.S4	AUGUSTUS	CDS	11197398	11197551	0.78	-	0	transcript_id "Ledus.S4G147600.t1"; gene_id "Ledus.S4G147600"
Ledus.S4	AUGUSTUS	exon	11197398	11197551	.	-	.	transcript_id "Ledus.S4G147600.t1"; gene_id "Ledus.S4G147600"
Ledus.S4	AUGUSTUS	start_codon	11197549	11197551	.	-	0	transcript_id "Ledus.S4G147600.t1"; gene_id "Ledus.S4G147600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12758.t1 is derived from g6380.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14334332	14336791	.	-	.	Ledus.S4G191400
Ledus.S4	AUGUSTUS	transcript	14334332	14336791	.	-	.	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	stop_codon	14334329	14334331	.	-	0	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	CDS	14334332	14335141	0.98	-	0	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	exon	14334332	14335141	.	-	.	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	intron	14335142	14335273	.	-	.	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	CDS	14335274	14336401	1	-	0	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	exon	14335274	14336401	.	-	.	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	intron	14336402	14336490	.	-	.	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	CDS	14336491	14336560	1	-	1	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	exon	14336491	14336560	.	-	.	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	intron	14336561	14336666	.	-	.	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	CDS	14336667	14336791	0.59	-	0	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	exon	14336667	14336791	.	-	.	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
Ledus.S4	AUGUSTUS	start_codon	14336789	14336791	.	-	0	transcript_id "Ledus.S4G191400.t1"; gene_id "Ledus.S4G191400"
# This transcript jg2279.t2 is derived from g9142.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2280.t1 is derived from g9143.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16907450	16909468	.	+	.	Ledus.S2G216200
Ledus.S2	AUGUSTUS	transcript	16907450	16909468	.	+	.	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	start_codon	16907450	16907452	.	+	0	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	CDS	16907450	16907854	0.65	+	0	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	exon	16907450	16907854	.	+	.	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	intron	16907855	16908043	.	+	.	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	CDS	16908044	16908736	0.98	+	0	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	exon	16908044	16908736	.	+	.	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	intron	16908737	16908895	.	+	.	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	CDS	16908896	16909207	1	+	0	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	exon	16908896	16909207	.	+	.	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	intron	16909208	16909297	.	+	.	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	CDS	16909298	16909468	1	+	0	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	exon	16909298	16909468	.	+	.	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
Ledus.S2	AUGUSTUS	stop_codon	16909469	16909471	.	+	0	transcript_id "Ledus.S2G216200.t1"; gene_id "Ledus.S2G216200"
# This transcript jg9143.t2 is derived from g10173.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9143.t3 is derived from g10173.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9143.t4 is derived from g10173.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9144.t1 is derived from g10174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4861903	4862208	.	-	.	Ledus.S3G062100
Ledus.S3	AUGUSTUS	transcript	4861903	4862208	.	-	.	transcript_id "Ledus.S3G062100.t1"; gene_id "Ledus.S3G062100"
Ledus.S3	AUGUSTUS	stop_codon	4861900	4861902	.	-	0	transcript_id "Ledus.S3G062100.t1"; gene_id "Ledus.S3G062100"
Ledus.S3	AUGUSTUS	CDS	4861903	4862208	0.83	-	0	transcript_id "Ledus.S3G062100.t1"; gene_id "Ledus.S3G062100"
Ledus.S3	AUGUSTUS	exon	4861903	4862208	.	-	.	transcript_id "Ledus.S3G062100.t1"; gene_id "Ledus.S3G062100"
Ledus.S3	AUGUSTUS	start_codon	4862206	4862208	.	-	0	transcript_id "Ledus.S3G062100.t1"; gene_id "Ledus.S3G062100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10999.t1 is derived from g4617.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1061546	1062904	.	-	.	Ledus.S4G015500
Ledus.S4	AUGUSTUS	transcript	1061974	1062904	.	-	.	transcript_id "Ledus.S4G015500.t1"; gene_id "Ledus.S4G015500"
Ledus.S4	AUGUSTUS	stop_codon	1061971	1061973	.	-	0	transcript_id "Ledus.S4G015500.t1"; gene_id "Ledus.S4G015500"
Ledus.S4	AUGUSTUS	CDS	1061974	1062002	0.51	-	2	transcript_id "Ledus.S4G015500.t1"; gene_id "Ledus.S4G015500"
Ledus.S4	AUGUSTUS	exon	1061974	1062002	.	-	.	transcript_id "Ledus.S4G015500.t1"; gene_id "Ledus.S4G015500"
Ledus.S4	AUGUSTUS	intron	1062003	1062069	.	-	.	transcript_id "Ledus.S4G015500.t1"; gene_id "Ledus.S4G015500"
Ledus.S4	AUGUSTUS	CDS	1062070	1062904	0.55	-	0	transcript_id "Ledus.S4G015500.t1"; gene_id "Ledus.S4G015500"
Ledus.S4	AUGUSTUS	exon	1062070	1062904	.	-	.	transcript_id "Ledus.S4G015500.t1"; gene_id "Ledus.S4G015500"
Ledus.S4	AUGUSTUS	start_codon	1062902	1062904	.	-	0	transcript_id "Ledus.S4G015500.t1"; gene_id "Ledus.S4G015500"
Ledus.S4	AUGUSTUS	transcript	1061546	1062904	.	-	.	transcript_id "Ledus.S4G015500.t2"; gene_id "Ledus.S4G015500"
Ledus.S4	AUGUSTUS	stop_codon	1061543	1061545	.	-	0	transcript_id "Ledus.S4G015500.t2"; gene_id "Ledus.S4G015500"
Ledus.S4	AUGUSTUS	CDS	1061546	1062904	0.9	-	0	transcript_id "Ledus.S4G015500.t2"; gene_id "Ledus.S4G015500"
Ledus.S4	AUGUSTUS	exon	1061546	1062904	.	-	.	transcript_id "Ledus.S4G015500.t2"; gene_id "Ledus.S4G015500"
Ledus.S4	AUGUSTUS	start_codon	1062902	1062904	.	-	0	transcript_id "Ledus.S4G015500.t2"; gene_id "Ledus.S4G015500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8036.t1 is derived from g12707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8696133	8698342	.	-	.	Ledus.S5G081400
Ledus.S5	AUGUSTUS	transcript	8696164	8698342	.	-	.	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	stop_codon	8696161	8696163	.	-	0	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8696164	8696210	0.84	-	2	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8696164	8696210	.	-	.	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	intron	8696211	8696358	.	-	.	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8696359	8696368	0.84	-	0	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8696359	8696368	.	-	.	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	intron	8696369	8696501	.	-	.	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8696502	8696532	0.85	-	1	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8696502	8696532	.	-	.	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	intron	8696533	8697523	.	-	.	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8697524	8697568	1	-	1	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8697524	8697568	.	-	.	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	intron	8697569	8697937	.	-	.	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8697938	8697948	1	-	0	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8697938	8697948	.	-	.	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	intron	8697949	8698039	.	-	.	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8698040	8698342	0.65	-	0	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8698040	8698342	.	-	.	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	start_codon	8698340	8698342	.	-	0	transcript_id "Ledus.S5G081400.t1"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	transcript	8696133	8698342	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	stop_codon	8696130	8696132	.	-	0	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8696133	8696210	0.83	-	0	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8696133	8696210	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	intron	8696211	8696358	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8696359	8696368	0.82	-	1	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8696359	8696368	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	intron	8696369	8696474	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8696475	8696532	0.72	-	2	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8696475	8696532	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	intron	8696533	8696751	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8696752	8696819	0.68	-	1	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8696752	8696819	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	intron	8696820	8697523	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8697524	8697568	0.86	-	1	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8697524	8697568	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	intron	8697569	8697937	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8697938	8697948	0.9	-	0	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8697938	8697948	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	intron	8697949	8698039	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	CDS	8698040	8698342	0.64	-	0	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	exon	8698040	8698342	.	-	.	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
Ledus.S5	AUGUSTUS	start_codon	8698340	8698342	.	-	0	transcript_id "Ledus.S5G081400.t2"; gene_id "Ledus.S5G081400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10711.t1 is derived from g11741.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17312534	17315441	.	+	.	Ledus.S3G218800
Ledus.S3	AUGUSTUS	transcript	17312534	17315441	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	start_codon	17312534	17312536	.	+	0	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	CDS	17312534	17312710	1	+	0	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	exon	17312534	17312710	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	intron	17312711	17312787	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	CDS	17312788	17312857	0.79	+	0	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	exon	17312788	17312857	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	intron	17312858	17312973	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	CDS	17312974	17313063	0.98	+	2	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	exon	17312974	17313063	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	intron	17313064	17313236	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	CDS	17313237	17313287	1	+	2	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	exon	17313237	17313287	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	intron	17313288	17313390	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	CDS	17313391	17313533	0.98	+	2	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	exon	17313391	17313533	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	intron	17313534	17313606	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	CDS	17313607	17313774	1	+	0	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	exon	17313607	17313774	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	intron	17313775	17313890	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	CDS	17313891	17314037	1	+	0	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	exon	17313891	17314037	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	intron	17314038	17314114	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	CDS	17314115	17314206	1	+	0	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	exon	17314115	17314206	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	intron	17314207	17314364	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	CDS	17314365	17314546	1	+	1	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	exon	17314365	17314546	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	intron	17314547	17314626	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	CDS	17314627	17315088	1	+	2	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	exon	17314627	17315088	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	intron	17315089	17315171	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	CDS	17315172	17315307	1	+	2	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	exon	17315172	17315307	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	intron	17315308	17315392	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	CDS	17315393	17315441	1	+	1	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	exon	17315393	17315441	.	+	.	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
Ledus.S3	AUGUSTUS	stop_codon	17315442	17315444	.	+	0	transcript_id "Ledus.S3G218800.t1"; gene_id "Ledus.S3G218800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7315.t1 is derived from g11986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1120863	1122549	.	+	.	Ledus.S5G009300
Ledus.S5	AUGUSTUS	transcript	1120863	1122549	.	+	.	transcript_id "Ledus.S5G009300.t1"; gene_id "Ledus.S5G009300"
Ledus.S5	AUGUSTUS	start_codon	1120863	1120865	.	+	0	transcript_id "Ledus.S5G009300.t1"; gene_id "Ledus.S5G009300"
Ledus.S5	AUGUSTUS	CDS	1120863	1121086	0.95	+	0	transcript_id "Ledus.S5G009300.t1"; gene_id "Ledus.S5G009300"
Ledus.S5	AUGUSTUS	exon	1120863	1121086	.	+	.	transcript_id "Ledus.S5G009300.t1"; gene_id "Ledus.S5G009300"
Ledus.S5	AUGUSTUS	intron	1121087	1121444	.	+	.	transcript_id "Ledus.S5G009300.t1"; gene_id "Ledus.S5G009300"
Ledus.S5	AUGUSTUS	CDS	1121445	1121777	0.4	+	1	transcript_id "Ledus.S5G009300.t1"; gene_id "Ledus.S5G009300"
Ledus.S5	AUGUSTUS	exon	1121445	1121777	.	+	.	transcript_id "Ledus.S5G009300.t1"; gene_id "Ledus.S5G009300"
Ledus.S5	AUGUSTUS	intron	1121778	1121864	.	+	.	transcript_id "Ledus.S5G009300.t1"; gene_id "Ledus.S5G009300"
Ledus.S5	AUGUSTUS	CDS	1121865	1122549	1	+	1	transcript_id "Ledus.S5G009300.t1"; gene_id "Ledus.S5G009300"
Ledus.S5	AUGUSTUS	exon	1121865	1122549	.	+	.	transcript_id "Ledus.S5G009300.t1"; gene_id "Ledus.S5G009300"
Ledus.S5	AUGUSTUS	stop_codon	1122550	1122552	.	+	0	transcript_id "Ledus.S5G009300.t1"; gene_id "Ledus.S5G009300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9398.t1 is derived from g10428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6528804	6533142	.	-	.	Ledus.S3G087500
Ledus.S3	AUGUSTUS	transcript	6528804	6533142	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	stop_codon	6528801	6528803	.	-	0	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	CDS	6528804	6529316	1	-	0	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	exon	6528804	6529316	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	intron	6529317	6529422	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	CDS	6529423	6529487	0.99	-	2	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	exon	6529423	6529487	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	intron	6529488	6529585	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	CDS	6529586	6529707	1	-	1	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	exon	6529586	6529707	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	intron	6529708	6529815	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	CDS	6529816	6529903	0.92	-	2	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	exon	6529816	6529903	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	intron	6529904	6530019	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	CDS	6530020	6530124	1	-	2	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	exon	6530020	6530124	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	intron	6530125	6530209	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	CDS	6530210	6530521	0.98	-	2	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	exon	6530210	6530521	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	intron	6530522	6530669	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	CDS	6530670	6531595	1	-	1	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	exon	6530670	6531595	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	intron	6531596	6531691	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	CDS	6531692	6532227	0.64	-	0	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	exon	6531692	6532227	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	intron	6532228	6532303	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	CDS	6532304	6532434	0.98	-	2	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	exon	6532304	6532434	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	intron	6532435	6532530	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	CDS	6532531	6532690	1	-	0	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	exon	6532531	6532690	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	intron	6532691	6532776	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	CDS	6532777	6533142	0.44	-	0	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	exon	6532777	6533142	.	-	.	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
Ledus.S3	AUGUSTUS	start_codon	6533140	6533142	.	-	0	transcript_id "Ledus.S3G087500.t1"; gene_id "Ledus.S3G087500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4537.t1 is derived from g1974.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17586209	17588513	.	+	.	Ledus.S1G195800
Ledus.S1	AUGUSTUS	transcript	17586209	17588513	.	+	.	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	start_codon	17586209	17586211	.	+	0	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	CDS	17586209	17586799	0.6	+	0	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	exon	17586209	17586799	.	+	.	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	intron	17586800	17586883	.	+	.	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	CDS	17586884	17587595	0.63	+	0	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	exon	17586884	17587595	.	+	.	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	intron	17587596	17587703	.	+	.	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	CDS	17587704	17588094	0.63	+	2	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	exon	17587704	17588094	.	+	.	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	intron	17588095	17588218	.	+	.	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	CDS	17588219	17588513	1	+	1	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	exon	17588219	17588513	.	+	.	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
Ledus.S1	AUGUSTUS	stop_codon	17588514	17588516	.	+	0	transcript_id "Ledus.S1G195800.t1"; gene_id "Ledus.S1G195800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1939.t1 is derived from g8802.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13603060	13605765	.	-	.	Ledus.S2G182100
Ledus.S2	AUGUSTUS	transcript	13603060	13605765	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	stop_codon	13603057	13603059	.	-	0	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	CDS	13603060	13603249	0.65	-	1	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	exon	13603060	13603249	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	intron	13603250	13603591	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	CDS	13603592	13603737	0.84	-	0	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	exon	13603592	13603737	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	intron	13603738	13603821	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	CDS	13603822	13603955	1	-	2	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	exon	13603822	13603955	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	intron	13603956	13604029	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	CDS	13604030	13604288	1	-	0	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	exon	13604030	13604288	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	intron	13604289	13604367	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	CDS	13604368	13604456	1	-	2	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	exon	13604368	13604456	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	intron	13604457	13604545	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	CDS	13604546	13604696	1	-	0	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	exon	13604546	13604696	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	intron	13604697	13604777	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	CDS	13604778	13604917	0.89	-	2	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	exon	13604778	13604917	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	intron	13604918	13605052	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	CDS	13605053	13605140	0.97	-	0	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	exon	13605053	13605140	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	intron	13605141	13605246	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	CDS	13605247	13605418	0.99	-	1	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	exon	13605247	13605418	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	intron	13605419	13605547	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	CDS	13605548	13605765	0.48	-	0	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	exon	13605548	13605765	.	-	.	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
Ledus.S2	AUGUSTUS	start_codon	13605763	13605765	.	-	0	transcript_id "Ledus.S2G182100.t1"; gene_id "Ledus.S2G182100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg12278.t1 is derived from g5898.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10823304	10825253	.	-	.	Ledus.S4G143400
Ledus.S4	AUGUSTUS	transcript	10824896	10825253	.	-	.	transcript_id "Ledus.S4G143400.t1"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	stop_codon	10824893	10824895	.	-	0	transcript_id "Ledus.S4G143400.t1"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	CDS	10824896	10824946	0.95	-	0	transcript_id "Ledus.S4G143400.t1"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	exon	10824896	10824946	.	-	.	transcript_id "Ledus.S4G143400.t1"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	intron	10824947	10825025	.	-	.	transcript_id "Ledus.S4G143400.t1"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	CDS	10825026	10825253	0.85	-	0	transcript_id "Ledus.S4G143400.t1"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	exon	10825026	10825253	.	-	.	transcript_id "Ledus.S4G143400.t1"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	start_codon	10825251	10825253	.	-	0	transcript_id "Ledus.S4G143400.t1"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	transcript	10824256	10825253	.	-	.	transcript_id "Ledus.S4G143400.t2"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	stop_codon	10824253	10824255	.	-	0	transcript_id "Ledus.S4G143400.t2"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	CDS	10824256	10824340	0.74	-	1	transcript_id "Ledus.S4G143400.t2"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	exon	10824256	10824340	.	-	.	transcript_id "Ledus.S4G143400.t2"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	intron	10824341	10824420	.	-	.	transcript_id "Ledus.S4G143400.t2"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	CDS	10824421	10825253	0.75	-	0	transcript_id "Ledus.S4G143400.t2"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	exon	10824421	10825253	.	-	.	transcript_id "Ledus.S4G143400.t2"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	start_codon	10825251	10825253	.	-	0	transcript_id "Ledus.S4G143400.t2"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	transcript	10824332	10825253	.	-	.	transcript_id "Ledus.S4G143400.t3"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	stop_codon	10824329	10824331	.	-	0	transcript_id "Ledus.S4G143400.t3"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	CDS	10824332	10824340	0.53	-	0	transcript_id "Ledus.S4G143400.t3"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	exon	10824332	10824340	.	-	.	transcript_id "Ledus.S4G143400.t3"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	intron	10824341	10824413	.	-	.	transcript_id "Ledus.S4G143400.t3"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	CDS	10824414	10825253	0.52	-	0	transcript_id "Ledus.S4G143400.t3"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	exon	10824414	10825253	.	-	.	transcript_id "Ledus.S4G143400.t3"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	start_codon	10825251	10825253	.	-	0	transcript_id "Ledus.S4G143400.t3"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	transcript	10823304	10825253	.	-	.	transcript_id "Ledus.S4G143400.t4"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	stop_codon	10823301	10823303	.	-	0	transcript_id "Ledus.S4G143400.t4"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	CDS	10823304	10825253	1	-	0	transcript_id "Ledus.S4G143400.t4"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	exon	10823304	10825253	.	-	.	transcript_id "Ledus.S4G143400.t4"; gene_id "Ledus.S4G143400"
Ledus.S4	AUGUSTUS	start_codon	10825251	10825253	.	-	0	transcript_id "Ledus.S4G143400.t4"; gene_id "Ledus.S4G143400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9570.t1 is derived from g10600.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7864456	7867494	.	+	.	Ledus.S3G104700
Ledus.S3	AUGUSTUS	transcript	7864456	7867494	.	+	.	transcript_id "Ledus.S3G104700.t1"; gene_id "Ledus.S3G104700"
Ledus.S3	AUGUSTUS	start_codon	7864456	7864458	.	+	0	transcript_id "Ledus.S3G104700.t1"; gene_id "Ledus.S3G104700"
Ledus.S3	AUGUSTUS	CDS	7864456	7867494	0.79	+	0	transcript_id "Ledus.S3G104700.t1"; gene_id "Ledus.S3G104700"
Ledus.S3	AUGUSTUS	exon	7864456	7867494	.	+	.	transcript_id "Ledus.S3G104700.t1"; gene_id "Ledus.S3G104700"
Ledus.S3	AUGUSTUS	stop_codon	7867495	7867497	.	+	0	transcript_id "Ledus.S3G104700.t1"; gene_id "Ledus.S3G104700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9245.t1 is derived from g10275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5594974	5597765	.	+	.	Ledus.S3G072200
Ledus.S3	AUGUSTUS	transcript	5594974	5597765	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	start_codon	5594974	5594976	.	+	0	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	CDS	5594974	5595113	0.75	+	0	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	exon	5594974	5595113	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	intron	5595114	5595408	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	CDS	5595409	5595577	0.38	+	1	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	exon	5595409	5595577	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	intron	5595578	5595671	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	CDS	5595672	5595943	1	+	0	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	exon	5595672	5595943	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	intron	5595944	5596043	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	CDS	5596044	5596281	1	+	1	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	exon	5596044	5596281	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	intron	5596282	5596432	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	CDS	5596433	5597009	1	+	0	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	exon	5596433	5597009	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	intron	5597010	5597206	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	CDS	5597207	5597409	1	+	2	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	exon	5597207	5597409	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	intron	5597410	5597546	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	CDS	5597547	5597765	1	+	0	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	exon	5597547	5597765	.	+	.	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
Ledus.S3	AUGUSTUS	stop_codon	5597766	5597768	.	+	0	transcript_id "Ledus.S3G072200.t1"; gene_id "Ledus.S3G072200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3698.t1 is derived from g1134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10989866	10990075	.	-	.	Ledus.S1G111900
Ledus.S1	AUGUSTUS	transcript	10989866	10990075	.	-	.	transcript_id "Ledus.S1G111900.t1"; gene_id "Ledus.S1G111900"
Ledus.S1	AUGUSTUS	stop_codon	10989863	10989865	.	-	0	transcript_id "Ledus.S1G111900.t1"; gene_id "Ledus.S1G111900"
Ledus.S1	AUGUSTUS	CDS	10989866	10990075	0.7	-	0	transcript_id "Ledus.S1G111900.t1"; gene_id "Ledus.S1G111900"
Ledus.S1	AUGUSTUS	exon	10989866	10990075	.	-	.	transcript_id "Ledus.S1G111900.t1"; gene_id "Ledus.S1G111900"
Ledus.S1	AUGUSTUS	start_codon	10990073	10990075	.	-	0	transcript_id "Ledus.S1G111900.t1"; gene_id "Ledus.S1G111900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6759.t1 is derived from g4202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33877776	33882203	.	+	.	Ledus.S1G418000
Ledus.S1	AUGUSTUS	transcript	33877776	33882203	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	start_codon	33877776	33877778	.	+	0	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33877776	33878587	0.39	+	0	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33877776	33878587	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33878588	33878689	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33878690	33879204	0.73	+	1	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33878690	33879204	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33879205	33879316	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33879317	33879458	0.56	+	2	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33879317	33879458	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33879459	33879550	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33879551	33879622	0.99	+	1	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33879551	33879622	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33879623	33879810	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33879811	33879879	0.98	+	1	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33879811	33879879	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33879880	33879959	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33879960	33880031	1	+	1	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33879960	33880031	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33880032	33880173	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33880174	33880245	0.98	+	1	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33880174	33880245	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33880246	33880364	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33880365	33880633	0.98	+	1	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33880365	33880633	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33880634	33880717	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33880718	33880962	1	+	2	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33880718	33880962	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33880963	33881048	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33881049	33881175	1	+	0	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33881049	33881175	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33881176	33881280	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33881281	33881349	1	+	2	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33881281	33881349	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33881350	33881429	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33881430	33881616	1	+	2	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33881430	33881616	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33881617	33881694	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33881695	33881836	1	+	1	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33881695	33881836	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	intron	33881837	33881933	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	CDS	33881934	33882203	0.96	+	0	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	exon	33881934	33882203	.	+	.	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
Ledus.S1	AUGUSTUS	stop_codon	33882204	33882206	.	+	0	transcript_id "Ledus.S1G418000.t1"; gene_id "Ledus.S1G418000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12291.t1 is derived from g5911.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11054151	11061876	.	-	.	Ledus.S4G144700
Ledus.S4	AUGUSTUS	transcript	11054151	11061876	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	stop_codon	11054148	11054150	.	-	0	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	CDS	11054151	11057603	0.44	-	0	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	exon	11054151	11057603	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	intron	11057604	11057719	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	CDS	11057720	11057833	0.99	-	0	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	exon	11057720	11057833	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	intron	11057834	11057981	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	CDS	11057982	11058128	1	-	0	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	exon	11057982	11058128	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	intron	11058129	11058258	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	CDS	11058259	11058567	0.83	-	0	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	exon	11058259	11058567	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	intron	11058568	11058663	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	CDS	11058664	11059238	0.89	-	2	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	exon	11058664	11059238	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	intron	11059239	11059485	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	CDS	11059486	11059899	0.97	-	2	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	exon	11059486	11059899	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	intron	11059900	11059989	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	CDS	11059990	11060267	1	-	1	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	exon	11059990	11060267	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	intron	11060268	11060444	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	CDS	11060445	11060524	1	-	0	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	exon	11060445	11060524	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	intron	11060525	11060636	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	CDS	11060637	11060690	1	-	0	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	exon	11060637	11060690	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	intron	11060691	11060904	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	CDS	11060905	11061124	1	-	1	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	exon	11060905	11061124	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	intron	11061125	11061209	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	CDS	11061210	11061366	1	-	2	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	exon	11061210	11061366	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	intron	11061367	11061593	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	CDS	11061594	11061876	0.47	-	0	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	exon	11061594	11061876	.	-	.	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
Ledus.S4	AUGUSTUS	start_codon	11061874	11061876	.	-	0	transcript_id "Ledus.S4G144700.t1"; gene_id "Ledus.S4G144700"
# This transcript jg11974.t2 is derived from g5593.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11974.t3 is derived from g5593.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11975.t1 is derived from g5594.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8240285	8242545	.	-	.	Ledus.S4G113100
Ledus.S4	AUGUSTUS	transcript	8240285	8242545	.	-	.	transcript_id "Ledus.S4G113100.t1"; gene_id "Ledus.S4G113100"
Ledus.S4	AUGUSTUS	stop_codon	8240282	8240284	.	-	0	transcript_id "Ledus.S4G113100.t1"; gene_id "Ledus.S4G113100"
Ledus.S4	AUGUSTUS	CDS	8240285	8240366	0.96	-	1	transcript_id "Ledus.S4G113100.t1"; gene_id "Ledus.S4G113100"
Ledus.S4	AUGUSTUS	exon	8240285	8240366	.	-	.	transcript_id "Ledus.S4G113100.t1"; gene_id "Ledus.S4G113100"
Ledus.S4	AUGUSTUS	intron	8240367	8240451	.	-	.	transcript_id "Ledus.S4G113100.t1"; gene_id "Ledus.S4G113100"
Ledus.S4	AUGUSTUS	CDS	8240452	8242331	0.97	-	0	transcript_id "Ledus.S4G113100.t1"; gene_id "Ledus.S4G113100"
Ledus.S4	AUGUSTUS	exon	8240452	8242331	.	-	.	transcript_id "Ledus.S4G113100.t1"; gene_id "Ledus.S4G113100"
Ledus.S4	AUGUSTUS	intron	8242332	8242404	.	-	.	transcript_id "Ledus.S4G113100.t1"; gene_id "Ledus.S4G113100"
Ledus.S4	AUGUSTUS	CDS	8242405	8242545	0.94	-	0	transcript_id "Ledus.S4G113100.t1"; gene_id "Ledus.S4G113100"
Ledus.S4	AUGUSTUS	exon	8242405	8242545	.	-	.	transcript_id "Ledus.S4G113100.t1"; gene_id "Ledus.S4G113100"
Ledus.S4	AUGUSTUS	start_codon	8242543	8242545	.	-	0	transcript_id "Ledus.S4G113100.t1"; gene_id "Ledus.S4G113100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3964.t1 is derived from g1400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13780352	13785206	.	-	.	Ledus.S1G138500
Ledus.S1	AUGUSTUS	transcript	13780352	13785206	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	stop_codon	13780349	13780351	.	-	0	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	CDS	13780352	13781142	1	-	2	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	exon	13780352	13781142	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	intron	13781143	13781426	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	CDS	13781427	13781632	1	-	1	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	exon	13781427	13781632	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	intron	13781633	13781889	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	CDS	13781890	13782041	1	-	0	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	exon	13781890	13782041	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	intron	13782042	13782170	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	CDS	13782171	13782989	0.97	-	0	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	exon	13782171	13782989	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	intron	13782990	13783154	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	CDS	13783155	13783394	1	-	0	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	exon	13783155	13783394	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	intron	13783395	13783579	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	CDS	13783580	13784032	0.96	-	0	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	exon	13783580	13784032	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	intron	13784033	13784128	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	CDS	13784129	13784587	0.96	-	0	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	exon	13784129	13784587	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	intron	13784588	13784999	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	CDS	13785000	13785206	0.97	-	0	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	exon	13785000	13785206	.	-	.	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
Ledus.S1	AUGUSTUS	start_codon	13785204	13785206	.	-	0	transcript_id "Ledus.S1G138500.t1"; gene_id "Ledus.S1G138500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6216.t1 is derived from g3659.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29707718	29708547	.	-	.	Ledus.S1G363700
Ledus.S1	AUGUSTUS	transcript	29707718	29708547	.	-	.	transcript_id "Ledus.S1G363700.t1"; gene_id "Ledus.S1G363700"
Ledus.S1	AUGUSTUS	stop_codon	29707715	29707717	.	-	0	transcript_id "Ledus.S1G363700.t1"; gene_id "Ledus.S1G363700"
Ledus.S1	AUGUSTUS	CDS	29707718	29707726	0.6	-	0	transcript_id "Ledus.S1G363700.t1"; gene_id "Ledus.S1G363700"
Ledus.S1	AUGUSTUS	exon	29707718	29707726	.	-	.	transcript_id "Ledus.S1G363700.t1"; gene_id "Ledus.S1G363700"
Ledus.S1	AUGUSTUS	intron	29707727	29707917	.	-	.	transcript_id "Ledus.S1G363700.t1"; gene_id "Ledus.S1G363700"
Ledus.S1	AUGUSTUS	CDS	29707918	29708547	0.58	-	0	transcript_id "Ledus.S1G363700.t1"; gene_id "Ledus.S1G363700"
Ledus.S1	AUGUSTUS	exon	29707918	29708547	.	-	.	transcript_id "Ledus.S1G363700.t1"; gene_id "Ledus.S1G363700"
Ledus.S1	AUGUSTUS	start_codon	29708545	29708547	.	-	0	transcript_id "Ledus.S1G363700.t1"; gene_id "Ledus.S1G363700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6954.t1 is derived from g6485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	297744	298805	.	+	.	Ledus.C7G001500
Ledus.C7	AUGUSTUS	transcript	297744	298805	.	+	.	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	start_codon	297744	297746	.	+	0	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	CDS	297744	298124	0.96	+	0	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	exon	297744	298124	.	+	.	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	intron	298125	298213	.	+	.	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	CDS	298214	298438	1	+	0	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	exon	298214	298438	.	+	.	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	intron	298439	298527	.	+	.	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	CDS	298528	298553	1	+	0	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	exon	298528	298553	.	+	.	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	intron	298554	298639	.	+	.	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	CDS	298640	298805	1	+	1	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	exon	298640	298805	.	+	.	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
Ledus.C7	AUGUSTUS	stop_codon	298806	298808	.	+	0	transcript_id "Ledus.C7G001500.t1"; gene_id "Ledus.C7G001500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4059.t1 is derived from g1495.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14372364	14377250	.	+	.	Ledus.S1G148000
Ledus.S1	AUGUSTUS	transcript	14372364	14377250	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	start_codon	14372364	14372366	.	+	0	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14372364	14372606	0.95	+	0	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14372364	14372606	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14372607	14372728	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14372729	14372794	0.92	+	0	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14372729	14372794	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14372795	14372928	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14372929	14373051	1	+	0	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14372929	14373051	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14373052	14373219	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14373220	14373300	1	+	0	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14373220	14373300	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14373301	14373383	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14373384	14373476	0.98	+	0	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14373384	14373476	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14373477	14373594	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14373595	14373670	0.6	+	0	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14373595	14373670	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14373671	14373814	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14373815	14373894	1	+	2	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14373815	14373894	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14373895	14373978	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14373979	14374050	1	+	0	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14373979	14374050	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14374051	14374173	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14374174	14374236	0.66	+	0	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14374174	14374236	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14374237	14374352	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14374353	14374449	0.98	+	0	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14374353	14374449	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14374450	14374570	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14374571	14374634	1	+	2	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14374571	14374634	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14374635	14374714	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14374715	14374774	1	+	1	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14374715	14374774	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14374775	14374913	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14374914	14374958	0.56	+	1	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14374914	14374958	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	intron	14374959	14375119	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	CDS	14375120	14377250	0.56	+	1	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	exon	14375120	14377250	.	+	.	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
Ledus.S1	AUGUSTUS	stop_codon	14377251	14377253	.	+	0	transcript_id "Ledus.S1G148000.t1"; gene_id "Ledus.S1G148000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg748.t1 is derived from g7609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4808035	4808622	.	+	.	Ledus.S2G063000
Ledus.S2	AUGUSTUS	transcript	4808035	4808622	.	+	.	transcript_id "Ledus.S2G063000.t1"; gene_id "Ledus.S2G063000"
Ledus.S2	AUGUSTUS	start_codon	4808035	4808037	.	+	0	transcript_id "Ledus.S2G063000.t1"; gene_id "Ledus.S2G063000"
Ledus.S2	AUGUSTUS	CDS	4808035	4808622	0.74	+	0	transcript_id "Ledus.S2G063000.t1"; gene_id "Ledus.S2G063000"
Ledus.S2	AUGUSTUS	exon	4808035	4808622	.	+	.	transcript_id "Ledus.S2G063000.t1"; gene_id "Ledus.S2G063000"
Ledus.S2	AUGUSTUS	stop_codon	4808623	4808625	.	+	0	transcript_id "Ledus.S2G063000.t1"; gene_id "Ledus.S2G063000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2878.t1 is derived from g313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4350827	4354296	.	-	.	Ledus.S1G029900
Ledus.S1	AUGUSTUS	transcript	4350827	4354296	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	stop_codon	4350824	4350826	.	-	0	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4350827	4351126	0.87	-	0	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4350827	4351126	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4351127	4351306	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4351307	4351353	0.91	-	2	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4351307	4351353	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4351354	4351552	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4351553	4351572	0.96	-	1	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4351553	4351572	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4351573	4351650	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4351651	4351740	0.99	-	1	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4351651	4351740	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4351741	4351857	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4351858	4351946	0.88	-	0	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4351858	4351946	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4351947	4352033	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4352034	4352121	0.99	-	1	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4352034	4352121	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4352122	4352227	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4352228	4352289	0.99	-	0	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4352228	4352289	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4352290	4352549	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4352550	4352627	1	-	0	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4352550	4352627	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4352628	4352735	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4352736	4352780	1	-	0	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4352736	4352780	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4352781	4352999	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4353000	4353068	1	-	0	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4353000	4353068	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4353069	4353219	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4353220	4353307	0.96	-	1	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4353220	4353307	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4353308	4353496	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4353497	4353570	1	-	0	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4353497	4353570	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4353571	4353666	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4353667	4353791	1	-	2	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4353667	4353791	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4353792	4353892	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4353893	4353971	0.99	-	0	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4353893	4353971	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4353972	4354069	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4354070	4354120	0.97	-	0	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4354070	4354120	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	intron	4354121	4354236	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	CDS	4354237	4354296	0.7	-	0	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	exon	4354237	4354296	.	-	.	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
Ledus.S1	AUGUSTUS	start_codon	4354294	4354296	.	-	0	transcript_id "Ledus.S1G029900.t1"; gene_id "Ledus.S1G029900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8209.t1 is derived from g12880.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9894188	9896266	.	+	.	Ledus.S5G098700
Ledus.S5	AUGUSTUS	transcript	9894188	9896266	.	+	.	transcript_id "Ledus.S5G098700.t1"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	start_codon	9894188	9894190	.	+	0	transcript_id "Ledus.S5G098700.t1"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	CDS	9894188	9895317	0.87	+	0	transcript_id "Ledus.S5G098700.t1"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	exon	9894188	9895317	.	+	.	transcript_id "Ledus.S5G098700.t1"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	intron	9895318	9895527	.	+	.	transcript_id "Ledus.S5G098700.t1"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	CDS	9895528	9896266	0.9	+	1	transcript_id "Ledus.S5G098700.t1"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	exon	9895528	9896266	.	+	.	transcript_id "Ledus.S5G098700.t1"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	stop_codon	9896267	9896269	.	+	0	transcript_id "Ledus.S5G098700.t1"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	transcript	9895748	9896266	.	+	.	transcript_id "Ledus.S5G098700.t2"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	start_codon	9895748	9895750	.	+	0	transcript_id "Ledus.S5G098700.t2"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	CDS	9895748	9896266	0.89	+	0	transcript_id "Ledus.S5G098700.t2"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	exon	9895748	9896266	.	+	.	transcript_id "Ledus.S5G098700.t2"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	stop_codon	9896267	9896269	.	+	0	transcript_id "Ledus.S5G098700.t2"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	transcript	9895874	9896266	.	+	.	transcript_id "Ledus.S5G098700.t3"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	start_codon	9895874	9895876	.	+	0	transcript_id "Ledus.S5G098700.t3"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	CDS	9895874	9896266	0.63	+	0	transcript_id "Ledus.S5G098700.t3"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	exon	9895874	9896266	.	+	.	transcript_id "Ledus.S5G098700.t3"; gene_id "Ledus.S5G098700"
Ledus.S5	AUGUSTUS	stop_codon	9896267	9896269	.	+	0	transcript_id "Ledus.S5G098700.t3"; gene_id "Ledus.S5G098700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg405.t1 is derived from g7266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2236793	2237431	.	-	.	Ledus.S2G028700
Ledus.S2	AUGUSTUS	transcript	2236793	2237431	.	-	.	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	stop_codon	2236790	2236792	.	-	0	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	CDS	2236793	2236801	1	-	0	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	exon	2236793	2236801	.	-	.	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	intron	2236802	2236961	.	-	.	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	CDS	2236962	2237110	1	-	2	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	exon	2236962	2237110	.	-	.	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	intron	2237111	2237190	.	-	.	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	CDS	2237191	2237273	1	-	1	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	exon	2237191	2237273	.	-	.	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	intron	2237274	2237372	.	-	.	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	CDS	2237373	2237431	0.97	-	0	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	exon	2237373	2237431	.	-	.	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
Ledus.S2	AUGUSTUS	start_codon	2237429	2237431	.	-	0	transcript_id "Ledus.S2G028700.t1"; gene_id "Ledus.S2G028700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3664.t1 is derived from g1100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10557492	10557951	.	-	.	Ledus.S1G108500
Ledus.S1	AUGUSTUS	transcript	10557492	10557951	.	-	.	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	stop_codon	10557489	10557491	.	-	0	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	CDS	10557492	10557519	0.94	-	1	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	exon	10557492	10557519	.	-	.	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	intron	10557520	10557603	.	-	.	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	CDS	10557604	10557651	0.94	-	1	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	exon	10557604	10557651	.	-	.	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	intron	10557652	10557722	.	-	.	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	CDS	10557723	10557768	0.94	-	2	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	exon	10557723	10557768	.	-	.	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	intron	10557769	10557857	.	-	.	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	CDS	10557858	10557951	0.83	-	0	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	exon	10557858	10557951	.	-	.	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
Ledus.S1	AUGUSTUS	start_codon	10557949	10557951	.	-	0	transcript_id "Ledus.S1G108500.t1"; gene_id "Ledus.S1G108500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8062.t1 is derived from g12733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9010983	9012947	.	+	.	Ledus.S5G084000
Ledus.S5	AUGUSTUS	transcript	9010983	9012947	.	+	.	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	start_codon	9010983	9010985	.	+	0	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	CDS	9010983	9011157	0.79	+	0	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	exon	9010983	9011157	.	+	.	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	intron	9011158	9011296	.	+	.	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	CDS	9011297	9011719	1	+	2	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	exon	9011297	9011719	.	+	.	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	intron	9011720	9011810	.	+	.	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	CDS	9011811	9011875	1	+	2	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	exon	9011811	9011875	.	+	.	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	intron	9011876	9011968	.	+	.	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	CDS	9011969	9012241	1	+	0	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	exon	9011969	9012241	.	+	.	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	intron	9012242	9012466	.	+	.	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	CDS	9012467	9012720	0.89	+	0	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	exon	9012467	9012720	.	+	.	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	intron	9012721	9012859	.	+	.	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	CDS	9012860	9012947	1	+	1	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	exon	9012860	9012947	.	+	.	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	stop_codon	9012948	9012950	.	+	0	transcript_id "Ledus.S5G084000.t1"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	transcript	9010983	9012259	.	+	.	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	start_codon	9010983	9010985	.	+	0	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	CDS	9010983	9011157	0.79	+	0	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	exon	9010983	9011157	.	+	.	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	intron	9011158	9011296	.	+	.	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	CDS	9011297	9011719	1	+	2	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	exon	9011297	9011719	.	+	.	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	intron	9011720	9011810	.	+	.	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	CDS	9011811	9011875	1	+	2	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	exon	9011811	9011875	.	+	.	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	intron	9011876	9011968	.	+	.	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	CDS	9011969	9012259	0.98	+	0	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	exon	9011969	9012259	.	+	.	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
Ledus.S5	AUGUSTUS	stop_codon	9012260	9012262	.	+	0	transcript_id "Ledus.S5G084000.t2"; gene_id "Ledus.S5G084000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12489.t1 is derived from g6110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12346105	12348594	.	+	.	Ledus.S4G164500
Ledus.S4	AUGUSTUS	transcript	12346105	12348594	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	start_codon	12346105	12346107	.	+	0	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	CDS	12346105	12346180	1	+	0	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	exon	12346105	12346180	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	intron	12346181	12346287	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	CDS	12346288	12346361	1	+	2	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	exon	12346288	12346361	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	intron	12346362	12346460	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	CDS	12346461	12346668	1	+	0	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	exon	12346461	12346668	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	intron	12346669	12346741	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	CDS	12346742	12347022	1	+	2	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	exon	12346742	12347022	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	intron	12347023	12347103	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	CDS	12347104	12347807	0.99	+	0	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	exon	12347104	12347807	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	intron	12347808	12347884	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	CDS	12347885	12348294	0.99	+	1	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	exon	12347885	12348294	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	intron	12348295	12348403	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	CDS	12348404	12348594	0.99	+	2	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	exon	12348404	12348594	.	+	.	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
Ledus.S4	AUGUSTUS	stop_codon	12348595	12348597	.	+	0	transcript_id "Ledus.S4G164500.t1"; gene_id "Ledus.S4G164500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2339.t1 is derived from g9202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17354987	17357172	.	+	.	Ledus.S2G222100
Ledus.S2	AUGUSTUS	transcript	17354987	17357172	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	start_codon	17354987	17354989	.	+	0	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	CDS	17354987	17355161	0.46	+	0	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	exon	17354987	17355161	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	intron	17355162	17355233	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	CDS	17355234	17355339	1	+	2	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	exon	17355234	17355339	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	intron	17355340	17355403	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	CDS	17355404	17355577	1	+	1	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	exon	17355404	17355577	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	intron	17355578	17355680	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	CDS	17355681	17355835	1	+	1	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	exon	17355681	17355835	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	intron	17355836	17355929	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	CDS	17355930	17355991	1	+	2	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	exon	17355930	17355991	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	intron	17355992	17356069	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	CDS	17356070	17356275	1	+	0	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	exon	17356070	17356275	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	intron	17356276	17356344	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	CDS	17356345	17356537	1	+	1	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	exon	17356345	17356537	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	intron	17356538	17356619	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	CDS	17356620	17356742	1	+	0	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	exon	17356620	17356742	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	intron	17356743	17356831	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	CDS	17356832	17357002	0.96	+	0	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	exon	17356832	17357002	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	intron	17357003	17357106	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	CDS	17357107	17357172	0.69	+	0	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	exon	17357107	17357172	.	+	.	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
Ledus.S2	AUGUSTUS	stop_codon	17357173	17357175	.	+	0	transcript_id "Ledus.S2G222100.t1"; gene_id "Ledus.S2G222100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8931.t1 is derived from g9961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3270869	3271105	.	+	.	Ledus.S3G040800
Ledus.S3	AUGUSTUS	transcript	3270869	3271105	.	+	.	transcript_id "Ledus.S3G040800.t1"; gene_id "Ledus.S3G040800"
Ledus.S3	AUGUSTUS	start_codon	3270869	3270871	.	+	0	transcript_id "Ledus.S3G040800.t1"; gene_id "Ledus.S3G040800"
Ledus.S3	AUGUSTUS	CDS	3270869	3271105	0.96	+	0	transcript_id "Ledus.S3G040800.t1"; gene_id "Ledus.S3G040800"
Ledus.S3	AUGUSTUS	exon	3270869	3271105	.	+	.	transcript_id "Ledus.S3G040800.t1"; gene_id "Ledus.S3G040800"
Ledus.S3	AUGUSTUS	stop_codon	3271106	3271108	.	+	0	transcript_id "Ledus.S3G040800.t1"; gene_id "Ledus.S3G040800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5427.t1 is derived from g2866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24104996	24105733	.	-	.	Ledus.S1G284800
Ledus.S1	AUGUSTUS	transcript	24104996	24105733	.	-	.	transcript_id "Ledus.S1G284800.t1"; gene_id "Ledus.S1G284800"
Ledus.S1	AUGUSTUS	stop_codon	24104993	24104995	.	-	0	transcript_id "Ledus.S1G284800.t1"; gene_id "Ledus.S1G284800"
Ledus.S1	AUGUSTUS	CDS	24104996	24105733	1	-	0	transcript_id "Ledus.S1G284800.t1"; gene_id "Ledus.S1G284800"
Ledus.S1	AUGUSTUS	exon	24104996	24105733	.	-	.	transcript_id "Ledus.S1G284800.t1"; gene_id "Ledus.S1G284800"
Ledus.S1	AUGUSTUS	start_codon	24105731	24105733	.	-	0	transcript_id "Ledus.S1G284800.t1"; gene_id "Ledus.S1G284800"
# This transcript jg115.t2 is derived from g9528.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg116.t1 is derived from g9529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	517423	517764	.	+	.	Ledus.C8G007600
Ledus.C8	AUGUSTUS	transcript	517423	517764	.	+	.	transcript_id "Ledus.C8G007600.t1"; gene_id "Ledus.C8G007600"
Ledus.C8	AUGUSTUS	start_codon	517423	517425	.	+	0	transcript_id "Ledus.C8G007600.t1"; gene_id "Ledus.C8G007600"
Ledus.C8	AUGUSTUS	CDS	517423	517764	0.42	+	0	transcript_id "Ledus.C8G007600.t1"; gene_id "Ledus.C8G007600"
Ledus.C8	AUGUSTUS	exon	517423	517764	.	+	.	transcript_id "Ledus.C8G007600.t1"; gene_id "Ledus.C8G007600"
Ledus.C8	AUGUSTUS	stop_codon	517765	517767	.	+	0	transcript_id "Ledus.C8G007600.t1"; gene_id "Ledus.C8G007600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11068.t1 is derived from g4686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1596785	1599040	.	+	.	Ledus.S4G022400
Ledus.S4	AUGUSTUS	transcript	1596785	1599040	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	start_codon	1596785	1596787	.	+	0	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	CDS	1596785	1596874	0.96	+	0	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	exon	1596785	1596874	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	intron	1596875	1596970	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	CDS	1596971	1597055	1	+	0	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	exon	1596971	1597055	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	intron	1597056	1597122	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	CDS	1597123	1597316	0.93	+	2	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	exon	1597123	1597316	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	intron	1597317	1597435	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	CDS	1597436	1597518	1	+	0	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	exon	1597436	1597518	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	intron	1597519	1597740	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	CDS	1597741	1597786	1	+	1	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	exon	1597741	1597786	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	intron	1597787	1597935	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	CDS	1597936	1597992	1	+	0	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	exon	1597936	1597992	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	intron	1597993	1598075	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	CDS	1598076	1598130	1	+	0	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	exon	1598076	1598130	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	intron	1598131	1598211	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	CDS	1598212	1598336	1	+	2	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	exon	1598212	1598336	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	intron	1598337	1598485	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	CDS	1598486	1598549	1	+	0	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	exon	1598486	1598549	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	intron	1598550	1598634	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	CDS	1598635	1598768	0.97	+	2	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	exon	1598635	1598768	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	intron	1598769	1598869	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	CDS	1598870	1599040	1	+	0	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	exon	1598870	1599040	.	+	.	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
Ledus.S4	AUGUSTUS	stop_codon	1599041	1599043	.	+	0	transcript_id "Ledus.S4G022400.t1"; gene_id "Ledus.S4G022400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13139.t1 is derived from g6949.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6997767	6998219	.	+	.	Ledus.S6G020100
Ledus.S6	AUGUSTUS	transcript	6997767	6998219	.	+	.	transcript_id "Ledus.S6G020100.t1"; gene_id "Ledus.S6G020100"
Ledus.S6	AUGUSTUS	start_codon	6997767	6997769	.	+	0	transcript_id "Ledus.S6G020100.t1"; gene_id "Ledus.S6G020100"
Ledus.S6	AUGUSTUS	CDS	6997767	6998219	0.41	+	0	transcript_id "Ledus.S6G020100.t1"; gene_id "Ledus.S6G020100"
Ledus.S6	AUGUSTUS	exon	6997767	6998219	.	+	.	transcript_id "Ledus.S6G020100.t1"; gene_id "Ledus.S6G020100"
Ledus.S6	AUGUSTUS	stop_codon	6998220	6998222	.	+	0	transcript_id "Ledus.S6G020100.t1"; gene_id "Ledus.S6G020100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12505.t1 is derived from g6126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12463252	12465372	.	+	.	Ledus.S4G166100
Ledus.S4	AUGUSTUS	transcript	12463252	12465372	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	start_codon	12463252	12463254	.	+	0	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12463252	12463275	0.59	+	0	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12463252	12463275	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	intron	12463276	12463355	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12463356	12463482	0.96	+	0	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12463356	12463482	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	intron	12463483	12463569	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12463570	12463644	1	+	2	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12463570	12463644	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	intron	12463645	12463717	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12463718	12463785	1	+	2	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12463718	12463785	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	intron	12463786	12463898	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12463899	12463991	1	+	0	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12463899	12463991	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	intron	12463992	12464067	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12464068	12464139	1	+	0	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12464068	12464139	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	intron	12464140	12464223	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12464224	12464295	1	+	0	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12464224	12464295	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	intron	12464296	12464369	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12464370	12464429	1	+	0	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12464370	12464429	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	intron	12464430	12464510	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12464511	12464563	1	+	0	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12464511	12464563	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	intron	12464564	12464682	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12464683	12464780	1	+	1	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12464683	12464780	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	intron	12464781	12464862	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12464863	12464962	1	+	2	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12464863	12464962	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	intron	12464963	12465056	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12465057	12465160	0.86	+	1	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12465057	12465160	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	intron	12465161	12465265	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	CDS	12465266	12465372	1	+	2	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	exon	12465266	12465372	.	+	.	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
Ledus.S4	AUGUSTUS	stop_codon	12465373	12465375	.	+	0	transcript_id "Ledus.S4G166100.t1"; gene_id "Ledus.S4G166100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg648.t1 is derived from g7509.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3871367	3872302	.	-	.	Ledus.S2G053000
Ledus.S2	AUGUSTUS	transcript	3871367	3872302	.	-	.	transcript_id "Ledus.S2G053000.t1"; gene_id "Ledus.S2G053000"
Ledus.S2	AUGUSTUS	stop_codon	3871364	3871366	.	-	0	transcript_id "Ledus.S2G053000.t1"; gene_id "Ledus.S2G053000"
Ledus.S2	AUGUSTUS	CDS	3871367	3871847	1	-	1	transcript_id "Ledus.S2G053000.t1"; gene_id "Ledus.S2G053000"
Ledus.S2	AUGUSTUS	exon	3871367	3871847	.	-	.	transcript_id "Ledus.S2G053000.t1"; gene_id "Ledus.S2G053000"
Ledus.S2	AUGUSTUS	intron	3871848	3872123	.	-	.	transcript_id "Ledus.S2G053000.t1"; gene_id "Ledus.S2G053000"
Ledus.S2	AUGUSTUS	CDS	3872124	3872302	0.41	-	0	transcript_id "Ledus.S2G053000.t1"; gene_id "Ledus.S2G053000"
Ledus.S2	AUGUSTUS	exon	3872124	3872302	.	-	.	transcript_id "Ledus.S2G053000.t1"; gene_id "Ledus.S2G053000"
Ledus.S2	AUGUSTUS	start_codon	3872300	3872302	.	-	0	transcript_id "Ledus.S2G053000.t1"; gene_id "Ledus.S2G053000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2825.t1 is derived from g259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3979032	3980966	.	+	.	Ledus.S1G024600
Ledus.S1	AUGUSTUS	transcript	3979032	3980966	.	+	.	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	start_codon	3979032	3979034	.	+	0	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	CDS	3979032	3979490	0.68	+	0	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	exon	3979032	3979490	.	+	.	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	intron	3979491	3979564	.	+	.	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	CDS	3979565	3979691	0.58	+	0	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	exon	3979565	3979691	.	+	.	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	intron	3979692	3979834	.	+	.	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	CDS	3979835	3980504	0.56	+	2	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	exon	3979835	3980504	.	+	.	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	intron	3980505	3980584	.	+	.	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	CDS	3980585	3980966	0.75	+	1	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	exon	3980585	3980966	.	+	.	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
Ledus.S1	AUGUSTUS	stop_codon	3980967	3980969	.	+	0	transcript_id "Ledus.S1G024600.t1"; gene_id "Ledus.S1G024600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8580.t1 is derived from g9610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	331699	333654	.	-	.	Ledus.S3G005700
Ledus.S3	AUGUSTUS	transcript	331699	333654	.	-	.	transcript_id "Ledus.S3G005700.t1"; gene_id "Ledus.S3G005700"
Ledus.S3	AUGUSTUS	stop_codon	331696	331698	.	-	0	transcript_id "Ledus.S3G005700.t1"; gene_id "Ledus.S3G005700"
Ledus.S3	AUGUSTUS	CDS	331699	333654	0.91	-	0	transcript_id "Ledus.S3G005700.t1"; gene_id "Ledus.S3G005700"
Ledus.S3	AUGUSTUS	exon	331699	333654	.	-	.	transcript_id "Ledus.S3G005700.t1"; gene_id "Ledus.S3G005700"
Ledus.S3	AUGUSTUS	start_codon	333652	333654	.	-	0	transcript_id "Ledus.S3G005700.t1"; gene_id "Ledus.S3G005700"
# This transcript jg8036.t2 is derived from g12707.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8037.t1 is derived from g12708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8713668	8716174	.	-	.	Ledus.S5G081500
Ledus.S5	AUGUSTUS	transcript	8713668	8716174	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	stop_codon	8713665	8713667	.	-	0	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8713668	8713763	1	-	0	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8713668	8713763	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8713764	8713916	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8713917	8714024	1	-	0	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8713917	8714024	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8714025	8714104	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8714105	8714328	0.99	-	2	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8714105	8714328	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8714329	8714434	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8714435	8714825	1	-	0	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8714435	8714825	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8714826	8714925	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8714926	8714962	1	-	1	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8714926	8714962	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8714963	8715033	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8715034	8715128	0.94	-	0	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8715034	8715128	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8715129	8715467	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8715468	8715968	0.94	-	0	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8715468	8715968	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8715969	8716048	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8716049	8716174	0.82	-	0	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8716049	8716174	.	-	.	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	start_codon	8716172	8716174	.	-	0	transcript_id "Ledus.S5G081500.t1"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	transcript	8713668	8716174	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	stop_codon	8713665	8713667	.	-	0	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8713668	8713763	1	-	0	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8713668	8713763	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8713764	8713916	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8713917	8714024	1	-	0	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8713917	8714024	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8714025	8714104	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8714105	8714328	0.99	-	2	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8714105	8714328	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8714329	8714434	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8714435	8714825	1	-	0	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8714435	8714825	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8714826	8714925	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8714926	8714962	1	-	1	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8714926	8714962	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8714963	8715033	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8715034	8715128	0.89	-	0	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8715034	8715128	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8715129	8715467	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8715468	8715980	0.93	-	0	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8715468	8715980	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8715981	8716048	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8716049	8716174	0.8	-	0	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8716049	8716174	.	-	.	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	start_codon	8716172	8716174	.	-	0	transcript_id "Ledus.S5G081500.t2"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	transcript	8713668	8716174	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	stop_codon	8713665	8713667	.	-	0	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8713668	8713763	1	-	0	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8713668	8713763	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8713764	8713916	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8713917	8714024	1	-	0	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8713917	8714024	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8714025	8714104	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8714105	8714328	0.96	-	2	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8714105	8714328	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8714329	8714434	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8714435	8714970	0.84	-	1	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8714435	8714970	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8714971	8715033	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8715034	8715128	0.92	-	0	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8715034	8715128	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8715129	8715467	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8715468	8715968	0.93	-	0	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8715468	8715968	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	intron	8715969	8716048	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	CDS	8716049	8716174	0.76	-	0	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	exon	8716049	8716174	.	-	.	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
Ledus.S5	AUGUSTUS	start_codon	8716172	8716174	.	-	0	transcript_id "Ledus.S5G081500.t3"; gene_id "Ledus.S5G081500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2117.t1 is derived from g8980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14798804	14805052	.	+	.	Ledus.S2G199900
Ledus.S2	AUGUSTUS	transcript	14798804	14805052	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	start_codon	14798804	14798806	.	+	0	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14798804	14798923	0.97	+	0	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14798804	14798923	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14798924	14798998	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14798999	14799292	0.99	+	0	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14798999	14799292	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14799293	14799385	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14799386	14800016	1	+	0	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14799386	14800016	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14800017	14800111	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14800112	14800374	1	+	2	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14800112	14800374	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14800375	14800481	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14800482	14800677	0.98	+	0	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14800482	14800677	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14800678	14800821	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14800822	14800847	0.97	+	2	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14800822	14800847	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14800848	14800971	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14800972	14801423	0.96	+	0	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14800972	14801423	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14801424	14801548	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14801549	14801638	0.98	+	1	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14801549	14801638	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14801639	14801772	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14801773	14801953	0.98	+	1	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14801773	14801953	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14801954	14802100	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14802101	14802205	1	+	0	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14802101	14802205	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14802206	14802323	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14802324	14802551	1	+	0	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14802324	14802551	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14802552	14802639	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14802640	14802852	1	+	0	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14802640	14802852	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14802853	14802949	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14802950	14803174	1	+	0	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14802950	14803174	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14803175	14803265	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14803266	14803404	1	+	0	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14803266	14803404	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	intron	14803405	14803529	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	CDS	14803530	14805052	0.64	+	2	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	exon	14803530	14805052	.	+	.	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
Ledus.S2	AUGUSTUS	stop_codon	14805053	14805055	.	+	0	transcript_id "Ledus.S2G199900.t1"; gene_id "Ledus.S2G199900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5170.t1 is derived from g2609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22140963	22144814	.	+	.	Ledus.S1G259100
Ledus.S1	AUGUSTUS	transcript	22140963	22144814	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	start_codon	22140963	22140965	.	+	0	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	CDS	22140963	22142896	0.89	+	0	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	exon	22140963	22142896	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	intron	22142897	22143131	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	CDS	22143132	22143261	1	+	1	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	exon	22143132	22143261	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	intron	22143262	22143399	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	CDS	22143400	22143560	1	+	0	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	exon	22143400	22143560	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	intron	22143561	22143729	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	CDS	22143730	22143805	1	+	1	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	exon	22143730	22143805	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	intron	22143806	22143973	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	CDS	22143974	22144144	0.98	+	0	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	exon	22143974	22144144	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	intron	22144145	22144286	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	CDS	22144287	22144486	1	+	0	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	exon	22144287	22144486	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	intron	22144487	22144573	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	CDS	22144574	22144814	1	+	1	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	exon	22144574	22144814	.	+	.	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
Ledus.S1	AUGUSTUS	stop_codon	22144815	22144817	.	+	0	transcript_id "Ledus.S1G259100.t1"; gene_id "Ledus.S1G259100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1155.t1 is derived from g8016.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7969627	7972665	.	+	.	Ledus.S2G103700
Ledus.S2	AUGUSTUS	transcript	7969627	7972665	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	start_codon	7969627	7969629	.	+	0	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7969627	7969853	0.65	+	0	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7969627	7969853	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7969854	7970409	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7970410	7970465	1	+	1	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7970410	7970465	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7970466	7970625	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7970626	7970779	1	+	2	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7970626	7970779	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7970780	7970942	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7970943	7971132	1	+	1	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7970943	7971132	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7971133	7971412	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7971413	7971460	0.98	+	0	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7971413	7971460	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7971461	7971569	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7971570	7971666	1	+	0	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7971570	7971666	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7971667	7971821	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7971822	7971988	1	+	2	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7971822	7971988	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7971989	7972075	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7972076	7972141	1	+	0	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7972076	7972141	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7972142	7972236	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7972237	7972287	1	+	0	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7972237	7972287	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7972288	7972376	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7972377	7972481	1	+	0	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7972377	7972481	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7972482	7972602	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7972603	7972665	1	+	0	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7972603	7972665	.	+	.	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	stop_codon	7972666	7972668	.	+	0	transcript_id "Ledus.S2G103700.t1"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	transcript	7969627	7972665	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	start_codon	7969627	7969629	.	+	0	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7969627	7969853	0.65	+	0	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7969627	7969853	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7969854	7970406	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7970407	7970465	1	+	1	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7970407	7970465	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7970466	7970625	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7970626	7970779	1	+	2	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7970626	7970779	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7970780	7970942	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7970943	7971132	1	+	1	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7970943	7971132	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7971133	7971412	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7971413	7971460	0.95	+	0	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7971413	7971460	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7971461	7971569	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7971570	7971666	1	+	0	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7971570	7971666	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7971667	7971821	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7971822	7971988	1	+	2	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7971822	7971988	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7971989	7972075	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7972076	7972141	1	+	0	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7972076	7972141	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7972142	7972236	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7972237	7972287	1	+	0	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7972237	7972287	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7972288	7972376	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7972377	7972481	1	+	0	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7972377	7972481	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	intron	7972482	7972602	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	CDS	7972603	7972665	1	+	0	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	exon	7972603	7972665	.	+	.	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
Ledus.S2	AUGUSTUS	stop_codon	7972666	7972668	.	+	0	transcript_id "Ledus.S2G103700.t2"; gene_id "Ledus.S2G103700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1892.t1 is derived from g8755.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13202007	13202463	.	+	.	Ledus.S2G177400
Ledus.S2	AUGUSTUS	transcript	13202007	13202463	.	+	.	transcript_id "Ledus.S2G177400.t1"; gene_id "Ledus.S2G177400"
Ledus.S2	AUGUSTUS	start_codon	13202007	13202009	.	+	0	transcript_id "Ledus.S2G177400.t1"; gene_id "Ledus.S2G177400"
Ledus.S2	AUGUSTUS	CDS	13202007	13202154	0.9	+	0	transcript_id "Ledus.S2G177400.t1"; gene_id "Ledus.S2G177400"
Ledus.S2	AUGUSTUS	exon	13202007	13202154	.	+	.	transcript_id "Ledus.S2G177400.t1"; gene_id "Ledus.S2G177400"
Ledus.S2	AUGUSTUS	intron	13202155	13202284	.	+	.	transcript_id "Ledus.S2G177400.t1"; gene_id "Ledus.S2G177400"
Ledus.S2	AUGUSTUS	CDS	13202285	13202463	1	+	2	transcript_id "Ledus.S2G177400.t1"; gene_id "Ledus.S2G177400"
Ledus.S2	AUGUSTUS	exon	13202285	13202463	.	+	.	transcript_id "Ledus.S2G177400.t1"; gene_id "Ledus.S2G177400"
Ledus.S2	AUGUSTUS	stop_codon	13202464	13202466	.	+	0	transcript_id "Ledus.S2G177400.t1"; gene_id "Ledus.S2G177400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg472.t1 is derived from g7334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2766735	2767388	.	+	.	Ledus.S2G035500
Ledus.S2	AUGUSTUS	transcript	2766857	2767388	.	+	.	transcript_id "Ledus.S2G035500.t1"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	start_codon	2766857	2766859	.	+	0	transcript_id "Ledus.S2G035500.t1"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	CDS	2766857	2766908	0.92	+	0	transcript_id "Ledus.S2G035500.t1"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	exon	2766857	2766908	.	+	.	transcript_id "Ledus.S2G035500.t1"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	intron	2766909	2766978	.	+	.	transcript_id "Ledus.S2G035500.t1"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	CDS	2766979	2767388	0.93	+	2	transcript_id "Ledus.S2G035500.t1"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	exon	2766979	2767388	.	+	.	transcript_id "Ledus.S2G035500.t1"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	stop_codon	2767389	2767391	.	+	0	transcript_id "Ledus.S2G035500.t1"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	transcript	2766735	2767388	.	+	.	transcript_id "Ledus.S2G035500.t2"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	start_codon	2766735	2766737	.	+	0	transcript_id "Ledus.S2G035500.t2"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	CDS	2766735	2766819	0.58	+	0	transcript_id "Ledus.S2G035500.t2"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	exon	2766735	2766819	.	+	.	transcript_id "Ledus.S2G035500.t2"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	intron	2766820	2766972	.	+	.	transcript_id "Ledus.S2G035500.t2"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	CDS	2766973	2767388	0.72	+	2	transcript_id "Ledus.S2G035500.t2"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	exon	2766973	2767388	.	+	.	transcript_id "Ledus.S2G035500.t2"; gene_id "Ledus.S2G035500"
Ledus.S2	AUGUSTUS	stop_codon	2767389	2767391	.	+	0	transcript_id "Ledus.S2G035500.t2"; gene_id "Ledus.S2G035500"
# This transcript jg5209.t2 is derived from g2648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5210.t1 is derived from g2649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22477210	22479818	.	+	.	Ledus.S1G263100
Ledus.S1	AUGUSTUS	transcript	22477210	22479818	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	start_codon	22477210	22477212	.	+	0	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	CDS	22477210	22477454	0.91	+	0	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	exon	22477210	22477454	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	intron	22477455	22477540	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	CDS	22477541	22477687	1	+	1	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	exon	22477541	22477687	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	intron	22477688	22477772	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	CDS	22477773	22477838	1	+	1	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	exon	22477773	22477838	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	intron	22477839	22477936	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	CDS	22477937	22478105	1	+	1	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	exon	22477937	22478105	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	intron	22478106	22478193	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	CDS	22478194	22478422	1	+	0	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	exon	22478194	22478422	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	intron	22478423	22478500	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	CDS	22478501	22478849	0.97	+	2	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	exon	22478501	22478849	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	intron	22478850	22479046	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	CDS	22479047	22479167	0.95	+	1	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	exon	22479047	22479167	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	intron	22479168	22479246	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	CDS	22479247	22479282	0.97	+	0	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	exon	22479247	22479282	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	intron	22479283	22479362	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	CDS	22479363	22479578	0.5	+	0	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	exon	22479363	22479578	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	intron	22479579	22479734	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	CDS	22479735	22479818	0.87	+	0	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	exon	22479735	22479818	.	+	.	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
Ledus.S1	AUGUSTUS	stop_codon	22479819	22479821	.	+	0	transcript_id "Ledus.S1G263100.t1"; gene_id "Ledus.S1G263100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1390.t1 is derived from g8251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9735084	9736993	.	-	.	Ledus.S2G127200
Ledus.S2	AUGUSTUS	transcript	9735084	9736993	.	-	.	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	stop_codon	9735081	9735083	.	-	0	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	CDS	9735084	9735579	0.59	-	1	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	exon	9735084	9735579	.	-	.	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	intron	9735580	9735677	.	-	.	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	CDS	9735678	9735783	0.29	-	2	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	exon	9735678	9735783	.	-	.	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	intron	9735784	9735860	.	-	.	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	CDS	9735861	9735919	0.65	-	1	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	exon	9735861	9735919	.	-	.	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	intron	9735920	9736005	.	-	.	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	CDS	9736006	9736600	0.47	-	2	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	exon	9736006	9736600	.	-	.	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	intron	9736601	9736742	.	-	.	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	CDS	9736743	9736799	0.84	-	2	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	exon	9736743	9736799	.	-	.	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	intron	9736800	9736959	.	-	.	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	CDS	9736960	9736993	1	-	0	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	exon	9736960	9736993	.	-	.	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
Ledus.S2	AUGUSTUS	start_codon	9736991	9736993	.	-	0	transcript_id "Ledus.S2G127200.t1"; gene_id "Ledus.S2G127200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12006.t1 is derived from g5625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8506840	8507130	.	+	.	Ledus.S4G116200
Ledus.S4	AUGUSTUS	transcript	8506840	8507130	.	+	.	transcript_id "Ledus.S4G116200.t1"; gene_id "Ledus.S4G116200"
Ledus.S4	AUGUSTUS	start_codon	8506840	8506842	.	+	0	transcript_id "Ledus.S4G116200.t1"; gene_id "Ledus.S4G116200"
Ledus.S4	AUGUSTUS	CDS	8506840	8507130	0.98	+	0	transcript_id "Ledus.S4G116200.t1"; gene_id "Ledus.S4G116200"
Ledus.S4	AUGUSTUS	exon	8506840	8507130	.	+	.	transcript_id "Ledus.S4G116200.t1"; gene_id "Ledus.S4G116200"
Ledus.S4	AUGUSTUS	stop_codon	8507131	8507133	.	+	0	transcript_id "Ledus.S4G116200.t1"; gene_id "Ledus.S4G116200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7452.t1 is derived from g12123.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2790950	2791661	.	-	.	Ledus.S5G023000
Ledus.S5	AUGUSTUS	transcript	2790950	2791661	.	-	.	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	stop_codon	2790947	2790949	.	-	0	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	CDS	2790950	2791000	1	-	0	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	exon	2790950	2791000	.	-	.	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	intron	2791001	2791158	.	-	.	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	CDS	2791159	2791212	1	-	0	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	exon	2791159	2791212	.	-	.	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	intron	2791213	2791302	.	-	.	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	CDS	2791303	2791371	0.87	-	0	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	exon	2791303	2791371	.	-	.	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	intron	2791372	2791529	.	-	.	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	CDS	2791530	2791661	0.65	-	0	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	exon	2791530	2791661	.	-	.	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
Ledus.S5	AUGUSTUS	start_codon	2791659	2791661	.	-	0	transcript_id "Ledus.S5G023000.t1"; gene_id "Ledus.S5G023000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg790.t1 is derived from g7651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5124360	5125948	.	+	.	Ledus.S2G067200
Ledus.S2	AUGUSTUS	transcript	5124360	5125948	.	+	.	transcript_id "Ledus.S2G067200.t1"; gene_id "Ledus.S2G067200"
Ledus.S2	AUGUSTUS	start_codon	5124360	5124362	.	+	0	transcript_id "Ledus.S2G067200.t1"; gene_id "Ledus.S2G067200"
Ledus.S2	AUGUSTUS	CDS	5124360	5125790	0.28	+	0	transcript_id "Ledus.S2G067200.t1"; gene_id "Ledus.S2G067200"
Ledus.S2	AUGUSTUS	exon	5124360	5125790	.	+	.	transcript_id "Ledus.S2G067200.t1"; gene_id "Ledus.S2G067200"
Ledus.S2	AUGUSTUS	intron	5125791	5125879	.	+	.	transcript_id "Ledus.S2G067200.t1"; gene_id "Ledus.S2G067200"
Ledus.S2	AUGUSTUS	CDS	5125880	5125948	0.85	+	0	transcript_id "Ledus.S2G067200.t1"; gene_id "Ledus.S2G067200"
Ledus.S2	AUGUSTUS	exon	5125880	5125948	.	+	.	transcript_id "Ledus.S2G067200.t1"; gene_id "Ledus.S2G067200"
Ledus.S2	AUGUSTUS	stop_codon	5125949	5125951	.	+	0	transcript_id "Ledus.S2G067200.t1"; gene_id "Ledus.S2G067200"
# This transcript jg3565.t2 is derived from g1001.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3566.t1 is derived from g1002.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9625162	9632541	.	-	.	Ledus.S1G098700
Ledus.S1	AUGUSTUS	transcript	9625162	9632541	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	stop_codon	9625159	9625161	.	-	0	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9625162	9628050	1	-	0	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9625162	9628050	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9628051	9628133	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9628134	9628262	1	-	0	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9628134	9628262	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9628263	9628491	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9628492	9628623	1	-	0	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9628492	9628623	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9628624	9628711	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9628712	9629086	0.9	-	0	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9628712	9629086	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9629087	9629759	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9629760	9629901	1	-	1	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9629760	9629901	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9629902	9630082	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9630083	9630351	1	-	0	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9630083	9630351	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9630352	9630551	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9630552	9630908	1	-	0	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9630552	9630908	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9630909	9631674	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9631675	9631801	0.74	-	1	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9631675	9631801	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9631802	9631948	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9631949	9632072	0.43	-	2	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9631949	9632072	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9632073	9632148	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9632149	9632172	0.78	-	2	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9632149	9632172	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9632173	9632309	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9632310	9632403	0.5	-	0	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9632310	9632403	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9632404	9632538	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9632539	9632541	0.89	-	0	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9632539	9632541	.	-	.	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	start_codon	9632539	9632541	.	-	0	transcript_id "Ledus.S1G098700.t1"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	transcript	9625162	9632541	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	stop_codon	9625159	9625161	.	-	0	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9625162	9628050	1	-	0	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9625162	9628050	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9628051	9628133	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9628134	9628262	1	-	0	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9628134	9628262	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9628263	9628491	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9628492	9628623	1	-	0	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9628492	9628623	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9628624	9628711	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9628712	9629086	0.9	-	0	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9628712	9629086	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9629087	9629759	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9629760	9629901	1	-	1	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9629760	9629901	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9629902	9630082	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9630083	9630351	1	-	0	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9630083	9630351	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9630352	9630563	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9630564	9630908	1	-	0	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9630564	9630908	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9630909	9631674	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9631675	9631801	0.63	-	1	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9631675	9631801	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9631802	9631948	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9631949	9632072	0.39	-	2	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9631949	9632072	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9632073	9632148	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9632149	9632172	0.64	-	2	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9632149	9632172	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9632173	9632309	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9632310	9632403	0.38	-	0	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9632310	9632403	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	intron	9632404	9632538	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	CDS	9632539	9632541	0.9	-	0	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	exon	9632539	9632541	.	-	.	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
Ledus.S1	AUGUSTUS	start_codon	9632539	9632541	.	-	0	transcript_id "Ledus.S1G098700.t2"; gene_id "Ledus.S1G098700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12799.t1 is derived from g6421.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14671938	14672689	.	+	.	Ledus.S4G195500
Ledus.S4	AUGUSTUS	transcript	14671938	14672689	.	+	.	transcript_id "Ledus.S4G195500.t1"; gene_id "Ledus.S4G195500"
Ledus.S4	AUGUSTUS	start_codon	14671938	14671940	.	+	0	transcript_id "Ledus.S4G195500.t1"; gene_id "Ledus.S4G195500"
Ledus.S4	AUGUSTUS	CDS	14671938	14672267	0.47	+	0	transcript_id "Ledus.S4G195500.t1"; gene_id "Ledus.S4G195500"
Ledus.S4	AUGUSTUS	exon	14671938	14672267	.	+	.	transcript_id "Ledus.S4G195500.t1"; gene_id "Ledus.S4G195500"
Ledus.S4	AUGUSTUS	intron	14672268	14672353	.	+	.	transcript_id "Ledus.S4G195500.t1"; gene_id "Ledus.S4G195500"
Ledus.S4	AUGUSTUS	CDS	14672354	14672689	0.98	+	0	transcript_id "Ledus.S4G195500.t1"; gene_id "Ledus.S4G195500"
Ledus.S4	AUGUSTUS	exon	14672354	14672689	.	+	.	transcript_id "Ledus.S4G195500.t1"; gene_id "Ledus.S4G195500"
Ledus.S4	AUGUSTUS	stop_codon	14672690	14672692	.	+	0	transcript_id "Ledus.S4G195500.t1"; gene_id "Ledus.S4G195500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg88.t1 is derived from g9501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	375804	377521	.	-	.	Ledus.C8G004800
Ledus.C8	AUGUSTUS	transcript	375804	377521	.	-	.	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	stop_codon	375801	375803	.	-	0	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	CDS	375804	375957	0.46	-	1	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	exon	375804	375957	.	-	.	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	intron	375958	376100	.	-	.	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	CDS	376101	376304	1	-	1	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	exon	376101	376304	.	-	.	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	intron	376305	376510	.	-	.	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	CDS	376511	376713	1	-	0	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	exon	376511	376713	.	-	.	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	intron	376714	376885	.	-	.	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	CDS	376886	377130	0.99	-	2	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	exon	376886	377130	.	-	.	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	intron	377131	377247	.	-	.	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	CDS	377248	377521	0.42	-	0	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	exon	377248	377521	.	-	.	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
Ledus.C8	AUGUSTUS	start_codon	377519	377521	.	-	0	transcript_id "Ledus.C8G004800.t1"; gene_id "Ledus.C8G004800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13041.t1 is derived from g6851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3801828	3802244	.	-	.	Ledus.S6G010300
Ledus.S6	AUGUSTUS	transcript	3801828	3802244	.	-	.	transcript_id "Ledus.S6G010300.t1"; gene_id "Ledus.S6G010300"
Ledus.S6	AUGUSTUS	stop_codon	3801825	3801827	.	-	0	transcript_id "Ledus.S6G010300.t1"; gene_id "Ledus.S6G010300"
Ledus.S6	AUGUSTUS	CDS	3801828	3802244	0.5	-	0	transcript_id "Ledus.S6G010300.t1"; gene_id "Ledus.S6G010300"
Ledus.S6	AUGUSTUS	exon	3801828	3802244	.	-	.	transcript_id "Ledus.S6G010300.t1"; gene_id "Ledus.S6G010300"
Ledus.S6	AUGUSTUS	start_codon	3802242	3802244	.	-	0	transcript_id "Ledus.S6G010300.t1"; gene_id "Ledus.S6G010300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6342.t1 is derived from g3785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30661927	30663325	.	+	.	Ledus.S1G376300
Ledus.S1	AUGUSTUS	transcript	30661927	30663325	.	+	.	transcript_id "Ledus.S1G376300.t1"; gene_id "Ledus.S1G376300"
Ledus.S1	AUGUSTUS	start_codon	30661927	30661929	.	+	0	transcript_id "Ledus.S1G376300.t1"; gene_id "Ledus.S1G376300"
Ledus.S1	AUGUSTUS	CDS	30661927	30662137	0.46	+	0	transcript_id "Ledus.S1G376300.t1"; gene_id "Ledus.S1G376300"
Ledus.S1	AUGUSTUS	exon	30661927	30662137	.	+	.	transcript_id "Ledus.S1G376300.t1"; gene_id "Ledus.S1G376300"
Ledus.S1	AUGUSTUS	intron	30662138	30662216	.	+	.	transcript_id "Ledus.S1G376300.t1"; gene_id "Ledus.S1G376300"
Ledus.S1	AUGUSTUS	CDS	30662217	30663325	1	+	2	transcript_id "Ledus.S1G376300.t1"; gene_id "Ledus.S1G376300"
Ledus.S1	AUGUSTUS	exon	30662217	30663325	.	+	.	transcript_id "Ledus.S1G376300.t1"; gene_id "Ledus.S1G376300"
Ledus.S1	AUGUSTUS	stop_codon	30663326	30663328	.	+	0	transcript_id "Ledus.S1G376300.t1"; gene_id "Ledus.S1G376300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9244.t1 is derived from g10274.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5592610	5594379	.	-	.	Ledus.S3G072100
Ledus.S3	AUGUSTUS	transcript	5592610	5594379	.	-	.	transcript_id "Ledus.S3G072100.t1"; gene_id "Ledus.S3G072100"
Ledus.S3	AUGUSTUS	stop_codon	5592607	5592609	.	-	0	transcript_id "Ledus.S3G072100.t1"; gene_id "Ledus.S3G072100"
Ledus.S3	AUGUSTUS	CDS	5592610	5594379	1	-	0	transcript_id "Ledus.S3G072100.t1"; gene_id "Ledus.S3G072100"
Ledus.S3	AUGUSTUS	exon	5592610	5594379	.	-	.	transcript_id "Ledus.S3G072100.t1"; gene_id "Ledus.S3G072100"
Ledus.S3	AUGUSTUS	start_codon	5594377	5594379	.	-	0	transcript_id "Ledus.S3G072100.t1"; gene_id "Ledus.S3G072100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg444.t1 is derived from g7305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2642876	2648093	.	-	.	Ledus.S2G032600
Ledus.S2	AUGUSTUS	transcript	2642876	2648093	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	stop_codon	2642873	2642875	.	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2642876	2642977	0.92	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2642876	2642977	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2642978	2643090	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2643091	2643267	0.97	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2643091	2643267	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2643268	2643409	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2643410	2643491	1	-	1	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2643410	2643491	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2643492	2643613	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2643614	2643748	1	-	1	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2643614	2643748	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2643749	2643901	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2643902	2644005	0.46	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2643902	2644005	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2644006	2644200	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2644201	2644286	0.78	-	2	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2644201	2644286	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2644287	2644371	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2644372	2644497	0.74	-	2	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2644372	2644497	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2644498	2644624	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2644625	2644766	1	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2644625	2644766	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2644767	2645042	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2645043	2645276	0.96	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2645043	2645276	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2645277	2645484	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2645485	2645577	0.9	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2645485	2645577	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2645578	2645670	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2645671	2645775	0.91	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2645671	2645775	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2645776	2646081	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2646082	2646216	0.85	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2646082	2646216	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2646217	2646327	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2646328	2646375	0.73	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2646328	2646375	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2646376	2646476	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2646477	2646599	0.58	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2646477	2646599	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2646600	2646815	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2646816	2646922	0.67	-	2	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2646816	2646922	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2646923	2647124	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2647125	2647197	0.93	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2647125	2647197	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2647198	2647279	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2647280	2647345	0.99	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2647280	2647345	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2647346	2647648	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2647649	2647720	0.89	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2647649	2647720	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2647721	2647837	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2647838	2647906	0.88	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2647838	2647906	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	intron	2647907	2647994	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	CDS	2647995	2648093	0.59	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	exon	2647995	2648093	.	-	.	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
Ledus.S2	AUGUSTUS	start_codon	2648091	2648093	.	-	0	transcript_id "Ledus.S2G032600.t1"; gene_id "Ledus.S2G032600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1505.t1 is derived from g8366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10614213	10615412	.	+	.	Ledus.S2G138700
Ledus.S2	AUGUSTUS	transcript	10614213	10615412	.	+	.	transcript_id "Ledus.S2G138700.t1"; gene_id "Ledus.S2G138700"
Ledus.S2	AUGUSTUS	start_codon	10614213	10614215	.	+	0	transcript_id "Ledus.S2G138700.t1"; gene_id "Ledus.S2G138700"
Ledus.S2	AUGUSTUS	CDS	10614213	10615412	0.88	+	0	transcript_id "Ledus.S2G138700.t1"; gene_id "Ledus.S2G138700"
Ledus.S2	AUGUSTUS	exon	10614213	10615412	.	+	.	transcript_id "Ledus.S2G138700.t1"; gene_id "Ledus.S2G138700"
Ledus.S2	AUGUSTUS	stop_codon	10615413	10615415	.	+	0	transcript_id "Ledus.S2G138700.t1"; gene_id "Ledus.S2G138700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7429.t1 is derived from g12100.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2453220	2454536	.	-	.	Ledus.S5G020700
Ledus.S5	AUGUSTUS	transcript	2453220	2454536	.	-	.	transcript_id "Ledus.S5G020700.t1"; gene_id "Ledus.S5G020700"
Ledus.S5	AUGUSTUS	stop_codon	2453217	2453219	.	-	0	transcript_id "Ledus.S5G020700.t1"; gene_id "Ledus.S5G020700"
Ledus.S5	AUGUSTUS	CDS	2453220	2454536	0.85	-	0	transcript_id "Ledus.S5G020700.t1"; gene_id "Ledus.S5G020700"
Ledus.S5	AUGUSTUS	exon	2453220	2454536	.	-	.	transcript_id "Ledus.S5G020700.t1"; gene_id "Ledus.S5G020700"
Ledus.S5	AUGUSTUS	start_codon	2454534	2454536	.	-	0	transcript_id "Ledus.S5G020700.t1"; gene_id "Ledus.S5G020700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10807.t1 is derived from g11839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17863574	17866747	.	-	.	Ledus.S3G228400
Ledus.S3	AUGUSTUS	transcript	17863574	17866747	.	-	.	transcript_id "Ledus.S3G228400.t1"; gene_id "Ledus.S3G228400"
Ledus.S3	AUGUSTUS	stop_codon	17863571	17863573	.	-	0	transcript_id "Ledus.S3G228400.t1"; gene_id "Ledus.S3G228400"
Ledus.S3	AUGUSTUS	CDS	17863574	17866747	0.99	-	0	transcript_id "Ledus.S3G228400.t1"; gene_id "Ledus.S3G228400"
Ledus.S3	AUGUSTUS	exon	17863574	17866747	.	-	.	transcript_id "Ledus.S3G228400.t1"; gene_id "Ledus.S3G228400"
Ledus.S3	AUGUSTUS	start_codon	17866745	17866747	.	-	0	transcript_id "Ledus.S3G228400.t1"; gene_id "Ledus.S3G228400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3326.t1 is derived from g761.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7466392	7467899	.	-	.	Ledus.S1G074700
Ledus.S1	AUGUSTUS	transcript	7466392	7467899	.	-	.	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	stop_codon	7466389	7466391	.	-	0	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	CDS	7466392	7466531	1	-	2	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	exon	7466392	7466531	.	-	.	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	intron	7466532	7466631	.	-	.	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	CDS	7466632	7466719	1	-	0	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	exon	7466632	7466719	.	-	.	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	intron	7466720	7466799	.	-	.	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	CDS	7466800	7467018	1	-	0	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	exon	7466800	7467018	.	-	.	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	intron	7467019	7467163	.	-	.	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	CDS	7467164	7467548	0.98	-	1	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	exon	7467164	7467548	.	-	.	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	intron	7467549	7467840	.	-	.	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	CDS	7467841	7467899	0.98	-	0	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	exon	7467841	7467899	.	-	.	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
Ledus.S1	AUGUSTUS	start_codon	7467897	7467899	.	-	0	transcript_id "Ledus.S1G074700.t1"; gene_id "Ledus.S1G074700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3658.t1 is derived from g1094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10503515	10503916	.	-	.	Ledus.S1G107900
Ledus.S1	AUGUSTUS	transcript	10503515	10503916	.	-	.	transcript_id "Ledus.S1G107900.t1"; gene_id "Ledus.S1G107900"
Ledus.S1	AUGUSTUS	stop_codon	10503512	10503514	.	-	0	transcript_id "Ledus.S1G107900.t1"; gene_id "Ledus.S1G107900"
Ledus.S1	AUGUSTUS	CDS	10503515	10503916	0.95	-	0	transcript_id "Ledus.S1G107900.t1"; gene_id "Ledus.S1G107900"
Ledus.S1	AUGUSTUS	exon	10503515	10503916	.	-	.	transcript_id "Ledus.S1G107900.t1"; gene_id "Ledus.S1G107900"
Ledus.S1	AUGUSTUS	start_codon	10503914	10503916	.	-	0	transcript_id "Ledus.S1G107900.t1"; gene_id "Ledus.S1G107900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11949.t1 is derived from g5568.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7968193	7968669	.	-	.	Ledus.S4G110500
Ledus.S4	AUGUSTUS	transcript	7968193	7968669	.	-	.	transcript_id "Ledus.S4G110500.t1"; gene_id "Ledus.S4G110500"
Ledus.S4	AUGUSTUS	stop_codon	7968190	7968192	.	-	0	transcript_id "Ledus.S4G110500.t1"; gene_id "Ledus.S4G110500"
Ledus.S4	AUGUSTUS	CDS	7968193	7968246	1	-	0	transcript_id "Ledus.S4G110500.t1"; gene_id "Ledus.S4G110500"
Ledus.S4	AUGUSTUS	exon	7968193	7968246	.	-	.	transcript_id "Ledus.S4G110500.t1"; gene_id "Ledus.S4G110500"
Ledus.S4	AUGUSTUS	intron	7968247	7968331	.	-	.	transcript_id "Ledus.S4G110500.t1"; gene_id "Ledus.S4G110500"
Ledus.S4	AUGUSTUS	CDS	7968332	7968420	1	-	2	transcript_id "Ledus.S4G110500.t1"; gene_id "Ledus.S4G110500"
Ledus.S4	AUGUSTUS	exon	7968332	7968420	.	-	.	transcript_id "Ledus.S4G110500.t1"; gene_id "Ledus.S4G110500"
Ledus.S4	AUGUSTUS	intron	7968421	7968506	.	-	.	transcript_id "Ledus.S4G110500.t1"; gene_id "Ledus.S4G110500"
Ledus.S4	AUGUSTUS	CDS	7968507	7968669	1	-	0	transcript_id "Ledus.S4G110500.t1"; gene_id "Ledus.S4G110500"
Ledus.S4	AUGUSTUS	exon	7968507	7968669	.	-	.	transcript_id "Ledus.S4G110500.t1"; gene_id "Ledus.S4G110500"
Ledus.S4	AUGUSTUS	start_codon	7968667	7968669	.	-	0	transcript_id "Ledus.S4G110500.t1"; gene_id "Ledus.S4G110500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3260.t1 is derived from g695.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7153067	7153709	.	+	.	Ledus.S1G068100
Ledus.S1	AUGUSTUS	transcript	7153067	7153709	.	+	.	transcript_id "Ledus.S1G068100.t1"; gene_id "Ledus.S1G068100"
Ledus.S1	AUGUSTUS	start_codon	7153067	7153069	.	+	0	transcript_id "Ledus.S1G068100.t1"; gene_id "Ledus.S1G068100"
Ledus.S1	AUGUSTUS	CDS	7153067	7153329	0.99	+	0	transcript_id "Ledus.S1G068100.t1"; gene_id "Ledus.S1G068100"
Ledus.S1	AUGUSTUS	exon	7153067	7153329	.	+	.	transcript_id "Ledus.S1G068100.t1"; gene_id "Ledus.S1G068100"
Ledus.S1	AUGUSTUS	intron	7153330	7153492	.	+	.	transcript_id "Ledus.S1G068100.t1"; gene_id "Ledus.S1G068100"
Ledus.S1	AUGUSTUS	CDS	7153493	7153709	0.98	+	1	transcript_id "Ledus.S1G068100.t1"; gene_id "Ledus.S1G068100"
Ledus.S1	AUGUSTUS	exon	7153493	7153709	.	+	.	transcript_id "Ledus.S1G068100.t1"; gene_id "Ledus.S1G068100"
Ledus.S1	AUGUSTUS	stop_codon	7153710	7153712	.	+	0	transcript_id "Ledus.S1G068100.t1"; gene_id "Ledus.S1G068100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2342.t1 is derived from g9205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17360738	17363005	.	+	.	Ledus.S2G222400
Ledus.S2	AUGUSTUS	transcript	17360738	17363005	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	start_codon	17360738	17360740	.	+	0	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	CDS	17360738	17361189	0.96	+	0	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	exon	17360738	17361189	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	intron	17361190	17361284	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	CDS	17361285	17361438	1	+	1	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	exon	17361285	17361438	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	intron	17361439	17361531	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	CDS	17361532	17361607	1	+	0	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	exon	17361532	17361607	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	intron	17361608	17361823	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	CDS	17361824	17361926	1	+	2	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	exon	17361824	17361926	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	intron	17361927	17362081	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	CDS	17362082	17362150	1	+	1	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	exon	17362082	17362150	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	intron	17362151	17362324	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	CDS	17362325	17362361	1	+	1	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	exon	17362325	17362361	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	intron	17362362	17362448	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	CDS	17362449	17362523	1	+	0	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	exon	17362449	17362523	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	intron	17362524	17362610	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	CDS	17362611	17362662	1	+	0	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	exon	17362611	17362662	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	intron	17362663	17362746	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	CDS	17362747	17362791	0.99	+	2	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	exon	17362747	17362791	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	intron	17362792	17362907	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	CDS	17362908	17363005	0.99	+	2	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	exon	17362908	17363005	.	+	.	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
Ledus.S2	AUGUSTUS	stop_codon	17363006	17363008	.	+	0	transcript_id "Ledus.S2G222400.t1"; gene_id "Ledus.S2G222400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7119.t1 is derived from g6650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1665184	1666784	.	-	.	Ledus.C7G018000
Ledus.C7	AUGUSTUS	transcript	1665184	1666784	.	-	.	transcript_id "Ledus.C7G018000.t1"; gene_id "Ledus.C7G018000"
Ledus.C7	AUGUSTUS	stop_codon	1665181	1665183	.	-	0	transcript_id "Ledus.C7G018000.t1"; gene_id "Ledus.C7G018000"
Ledus.C7	AUGUSTUS	CDS	1665184	1666373	1	-	2	transcript_id "Ledus.C7G018000.t1"; gene_id "Ledus.C7G018000"
Ledus.C7	AUGUSTUS	exon	1665184	1666373	.	-	.	transcript_id "Ledus.C7G018000.t1"; gene_id "Ledus.C7G018000"
Ledus.C7	AUGUSTUS	intron	1666374	1666687	.	-	.	transcript_id "Ledus.C7G018000.t1"; gene_id "Ledus.C7G018000"
Ledus.C7	AUGUSTUS	CDS	1666688	1666784	0.78	-	0	transcript_id "Ledus.C7G018000.t1"; gene_id "Ledus.C7G018000"
Ledus.C7	AUGUSTUS	exon	1666688	1666784	.	-	.	transcript_id "Ledus.C7G018000.t1"; gene_id "Ledus.C7G018000"
Ledus.C7	AUGUSTUS	start_codon	1666782	1666784	.	-	0	transcript_id "Ledus.C7G018000.t1"; gene_id "Ledus.C7G018000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12954.t1 is derived from g6764.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	998791	999027	.	-	.	Ledus.S6G001600
Ledus.S6	AUGUSTUS	transcript	998791	999027	.	-	.	transcript_id "Ledus.S6G001600.t1"; gene_id "Ledus.S6G001600"
Ledus.S6	AUGUSTUS	stop_codon	998788	998790	.	-	0	transcript_id "Ledus.S6G001600.t1"; gene_id "Ledus.S6G001600"
Ledus.S6	AUGUSTUS	CDS	998791	999027	0.95	-	0	transcript_id "Ledus.S6G001600.t1"; gene_id "Ledus.S6G001600"
Ledus.S6	AUGUSTUS	exon	998791	999027	.	-	.	transcript_id "Ledus.S6G001600.t1"; gene_id "Ledus.S6G001600"
Ledus.S6	AUGUSTUS	start_codon	999025	999027	.	-	0	transcript_id "Ledus.S6G001600.t1"; gene_id "Ledus.S6G001600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6448.t1 is derived from g3891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31288419	31291206	.	+	.	Ledus.S1G386900
Ledus.S1	AUGUSTUS	transcript	31288419	31291206	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	start_codon	31288419	31288421	.	+	0	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	CDS	31288419	31288431	0.76	+	0	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	exon	31288419	31288431	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	intron	31288432	31288576	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	CDS	31288577	31288627	0.76	+	2	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	exon	31288577	31288627	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	intron	31288628	31288845	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	CDS	31288846	31288913	0.86	+	2	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	exon	31288846	31288913	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	intron	31288914	31289030	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	CDS	31289031	31289056	1	+	0	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	exon	31289031	31289056	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	intron	31289057	31289191	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	CDS	31289192	31289266	1	+	1	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	exon	31289192	31289266	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	intron	31289267	31289363	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	CDS	31289364	31289553	1	+	1	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	exon	31289364	31289553	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	intron	31289554	31289635	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	CDS	31289636	31289785	1	+	0	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	exon	31289636	31289785	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	intron	31289786	31289955	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	CDS	31289956	31290073	0.66	+	0	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	exon	31289956	31290073	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	intron	31290074	31290509	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	CDS	31290510	31290516	1	+	2	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	exon	31290510	31290516	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	intron	31290517	31290736	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	CDS	31290737	31290791	1	+	1	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	exon	31290737	31290791	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	intron	31290792	31290883	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	CDS	31290884	31291078	1	+	0	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	exon	31290884	31291078	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	intron	31291079	31291176	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	CDS	31291177	31291206	1	+	0	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	exon	31291177	31291206	.	+	.	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
Ledus.S1	AUGUSTUS	stop_codon	31291207	31291209	.	+	0	transcript_id "Ledus.S1G386900.t1"; gene_id "Ledus.S1G386900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1849.t1 is derived from g8712.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12940664	12942820	.	-	.	Ledus.S2G173100
Ledus.S2	AUGUSTUS	transcript	12940664	12942820	.	-	.	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	stop_codon	12940661	12940663	.	-	0	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	CDS	12940664	12941155	1	-	0	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	exon	12940664	12941155	.	-	.	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	intron	12941156	12941245	.	-	.	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	CDS	12941246	12941374	1	-	0	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	exon	12941246	12941374	.	-	.	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	intron	12941375	12941486	.	-	.	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	CDS	12941487	12941609	1	-	0	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	exon	12941487	12941609	.	-	.	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	intron	12941610	12941693	.	-	.	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	CDS	12941694	12941763	1	-	1	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	exon	12941694	12941763	.	-	.	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	intron	12941764	12941882	.	-	.	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	CDS	12941883	12941941	1	-	0	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	exon	12941883	12941941	.	-	.	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	intron	12941942	12942073	.	-	.	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	CDS	12942074	12942820	0.82	-	0	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	exon	12942074	12942820	.	-	.	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
Ledus.S2	AUGUSTUS	start_codon	12942818	12942820	.	-	0	transcript_id "Ledus.S2G173100.t1"; gene_id "Ledus.S2G173100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5448.t1 is derived from g2887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24357215	24358353	.	-	.	Ledus.S1G286900
Ledus.S1	AUGUSTUS	transcript	24357215	24358353	.	-	.	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	stop_codon	24357212	24357214	.	-	0	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	CDS	24357215	24357420	0.57	-	2	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	exon	24357215	24357420	.	-	.	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	intron	24357421	24357563	.	-	.	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	CDS	24357564	24357675	1	-	0	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	exon	24357564	24357675	.	-	.	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	intron	24357676	24357763	.	-	.	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	CDS	24357764	24357852	1	-	2	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	exon	24357764	24357852	.	-	.	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	intron	24357853	24357934	.	-	.	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	CDS	24357935	24358217	0.84	-	0	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	exon	24357935	24358217	.	-	.	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	intron	24358218	24358317	.	-	.	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	CDS	24358318	24358353	0.68	-	0	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	exon	24358318	24358353	.	-	.	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
Ledus.S1	AUGUSTUS	start_codon	24358351	24358353	.	-	0	transcript_id "Ledus.S1G286900.t1"; gene_id "Ledus.S1G286900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3683.t1 is derived from g1119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10836070	10839628	.	-	.	Ledus.S1G110400
Ledus.S1	AUGUSTUS	transcript	10836070	10839628	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	stop_codon	10836067	10836069	.	-	0	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10836070	10836109	0.26	-	1	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10836070	10836109	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10836110	10836339	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10836340	10836417	0.49	-	1	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10836340	10836417	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10836418	10836503	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10836504	10836631	0.95	-	0	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10836504	10836631	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10836632	10836732	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10836733	10836888	0.81	-	0	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10836733	10836888	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10836889	10836986	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10836987	10837102	1	-	2	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10836987	10837102	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10837103	10837195	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10837196	10837361	0.97	-	0	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10837196	10837361	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10837362	10837470	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10837471	10837593	0.7	-	0	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10837471	10837593	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10837594	10837698	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10837699	10837761	0.76	-	0	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10837699	10837761	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10837762	10838007	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10838008	10838115	1	-	0	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10838008	10838115	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10838116	10838259	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10838260	10838301	0.72	-	0	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10838260	10838301	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10838302	10838481	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10838482	10838626	0.58	-	1	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10838482	10838626	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10838627	10838768	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10838769	10838872	0.91	-	0	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10838769	10838872	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10838873	10839124	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10839125	10839228	0.95	-	2	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10839125	10839228	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10839229	10839312	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10839313	10839449	0.99	-	1	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10839313	10839449	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	intron	10839450	10839527	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	CDS	10839528	10839628	0.71	-	0	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	exon	10839528	10839628	.	-	.	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
Ledus.S1	AUGUSTUS	start_codon	10839626	10839628	.	-	0	transcript_id "Ledus.S1G110400.t1"; gene_id "Ledus.S1G110400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12028.t1 is derived from g5647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8975020	8975286	.	-	.	Ledus.S4G118400
Ledus.S4	AUGUSTUS	transcript	8975020	8975286	.	-	.	transcript_id "Ledus.S4G118400.t1"; gene_id "Ledus.S4G118400"
Ledus.S4	AUGUSTUS	stop_codon	8975017	8975019	.	-	0	transcript_id "Ledus.S4G118400.t1"; gene_id "Ledus.S4G118400"
Ledus.S4	AUGUSTUS	CDS	8975020	8975286	0.34	-	0	transcript_id "Ledus.S4G118400.t1"; gene_id "Ledus.S4G118400"
Ledus.S4	AUGUSTUS	exon	8975020	8975286	.	-	.	transcript_id "Ledus.S4G118400.t1"; gene_id "Ledus.S4G118400"
Ledus.S4	AUGUSTUS	start_codon	8975284	8975286	.	-	0	transcript_id "Ledus.S4G118400.t1"; gene_id "Ledus.S4G118400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9617.t1 is derived from g10647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8426862	8428745	.	-	.	Ledus.S3G109400
Ledus.S3	AUGUSTUS	transcript	8426862	8428745	.	-	.	transcript_id "Ledus.S3G109400.t1"; gene_id "Ledus.S3G109400"
Ledus.S3	AUGUSTUS	stop_codon	8426859	8426861	.	-	0	transcript_id "Ledus.S3G109400.t1"; gene_id "Ledus.S3G109400"
Ledus.S3	AUGUSTUS	CDS	8426862	8427731	0.41	-	0	transcript_id "Ledus.S3G109400.t1"; gene_id "Ledus.S3G109400"
Ledus.S3	AUGUSTUS	exon	8426862	8427731	.	-	.	transcript_id "Ledus.S3G109400.t1"; gene_id "Ledus.S3G109400"
Ledus.S3	AUGUSTUS	intron	8427732	8427821	.	-	.	transcript_id "Ledus.S3G109400.t1"; gene_id "Ledus.S3G109400"
Ledus.S3	AUGUSTUS	CDS	8427822	8428745	0.89	-	0	transcript_id "Ledus.S3G109400.t1"; gene_id "Ledus.S3G109400"
Ledus.S3	AUGUSTUS	exon	8427822	8428745	.	-	.	transcript_id "Ledus.S3G109400.t1"; gene_id "Ledus.S3G109400"
Ledus.S3	AUGUSTUS	start_codon	8428743	8428745	.	-	0	transcript_id "Ledus.S3G109400.t1"; gene_id "Ledus.S3G109400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12825.t1 is derived from g6447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15075900	15081905	.	-	.	Ledus.S4G198100
Ledus.S4	AUGUSTUS	transcript	15075900	15081905	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	stop_codon	15075897	15075899	.	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15075900	15076001	1	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15075900	15076001	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15076002	15076113	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15076114	15076203	1	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15076114	15076203	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15076204	15076296	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15076297	15076464	1	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15076297	15076464	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15076465	15076747	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15076748	15076840	1	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15076748	15076840	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15076841	15076920	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15076921	15077043	1	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15076921	15077043	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15077044	15077212	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15077213	15077308	1	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15077213	15077308	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15077309	15077387	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15077388	15077591	1	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15077388	15077591	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15077592	15077796	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15077797	15077886	0.97	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15077797	15077886	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15077887	15078005	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15078006	15078132	0.97	-	1	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15078006	15078132	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15078133	15078284	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15078285	15078397	0.99	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15078285	15078397	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15078398	15078501	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15078502	15078705	0.99	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15078502	15078705	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15078706	15078913	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15078914	15079042	1	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15078914	15079042	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15079043	15079289	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15079290	15079569	1	-	1	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15079290	15079569	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15079570	15080272	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15080273	15080424	0.98	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15080273	15080424	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15080425	15080542	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15080543	15080747	0.98	-	1	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15080543	15080747	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	intron	15080748	15081045	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	CDS	15081046	15081905	0.98	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	exon	15081046	15081905	.	-	.	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
Ledus.S4	AUGUSTUS	start_codon	15081903	15081905	.	-	0	transcript_id "Ledus.S4G198100.t1"; gene_id "Ledus.S4G198100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2592.t1 is derived from g25.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	177947	179466	.	+	.	Ledus.S1G001300
Ledus.S1	AUGUSTUS	transcript	177947	179466	.	+	.	transcript_id "Ledus.S1G001300.t1"; gene_id "Ledus.S1G001300"
Ledus.S1	AUGUSTUS	start_codon	177947	177949	.	+	0	transcript_id "Ledus.S1G001300.t1"; gene_id "Ledus.S1G001300"
Ledus.S1	AUGUSTUS	CDS	177947	178252	1	+	0	transcript_id "Ledus.S1G001300.t1"; gene_id "Ledus.S1G001300"
Ledus.S1	AUGUSTUS	exon	177947	178252	.	+	.	transcript_id "Ledus.S1G001300.t1"; gene_id "Ledus.S1G001300"
Ledus.S1	AUGUSTUS	intron	178253	178332	.	+	.	transcript_id "Ledus.S1G001300.t1"; gene_id "Ledus.S1G001300"
Ledus.S1	AUGUSTUS	CDS	178333	178512	1	+	0	transcript_id "Ledus.S1G001300.t1"; gene_id "Ledus.S1G001300"
Ledus.S1	AUGUSTUS	exon	178333	178512	.	+	.	transcript_id "Ledus.S1G001300.t1"; gene_id "Ledus.S1G001300"
Ledus.S1	AUGUSTUS	intron	178513	178593	.	+	.	transcript_id "Ledus.S1G001300.t1"; gene_id "Ledus.S1G001300"
Ledus.S1	AUGUSTUS	CDS	178594	179466	0.99	+	0	transcript_id "Ledus.S1G001300.t1"; gene_id "Ledus.S1G001300"
Ledus.S1	AUGUSTUS	exon	178594	179466	.	+	.	transcript_id "Ledus.S1G001300.t1"; gene_id "Ledus.S1G001300"
Ledus.S1	AUGUSTUS	stop_codon	179467	179469	.	+	0	transcript_id "Ledus.S1G001300.t1"; gene_id "Ledus.S1G001300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11338.t1 is derived from g4956.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3668317	3668931	.	+	.	Ledus.S4G049400
Ledus.S4	AUGUSTUS	transcript	3668317	3668931	.	+	.	transcript_id "Ledus.S4G049400.t1"; gene_id "Ledus.S4G049400"
Ledus.S4	AUGUSTUS	start_codon	3668317	3668319	.	+	0	transcript_id "Ledus.S4G049400.t1"; gene_id "Ledus.S4G049400"
Ledus.S4	AUGUSTUS	CDS	3668317	3668931	0.92	+	0	transcript_id "Ledus.S4G049400.t1"; gene_id "Ledus.S4G049400"
Ledus.S4	AUGUSTUS	exon	3668317	3668931	.	+	.	transcript_id "Ledus.S4G049400.t1"; gene_id "Ledus.S4G049400"
Ledus.S4	AUGUSTUS	stop_codon	3668932	3668934	.	+	0	transcript_id "Ledus.S4G049400.t1"; gene_id "Ledus.S4G049400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2897.t1 is derived from g332.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4449459	4451399	.	-	.	Ledus.S1G031800
Ledus.S1	AUGUSTUS	transcript	4449459	4451399	.	-	.	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	stop_codon	4449456	4449458	.	-	0	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	CDS	4449459	4449683	0.93	-	0	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	exon	4449459	4449683	.	-	.	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	intron	4449684	4449886	.	-	.	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	CDS	4449887	4450023	1	-	2	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	exon	4449887	4450023	.	-	.	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	intron	4450024	4450106	.	-	.	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	CDS	4450107	4450347	0.97	-	0	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	exon	4450107	4450347	.	-	.	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	intron	4450348	4450456	.	-	.	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	CDS	4450457	4450707	0.97	-	2	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	exon	4450457	4450707	.	-	.	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	intron	4450708	4451230	.	-	.	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	CDS	4451231	4451399	0.74	-	0	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	exon	4451231	4451399	.	-	.	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
Ledus.S1	AUGUSTUS	start_codon	4451397	4451399	.	-	0	transcript_id "Ledus.S1G031800.t1"; gene_id "Ledus.S1G031800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7873.t1 is derived from g12544.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7559612	7561098	.	-	.	Ledus.S5G065100
Ledus.S5	AUGUSTUS	transcript	7559612	7561098	.	-	.	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	stop_codon	7559609	7559611	.	-	0	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	CDS	7559612	7559703	0.96	-	2	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	exon	7559612	7559703	.	-	.	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	intron	7559704	7559824	.	-	.	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	CDS	7559825	7559848	0.76	-	2	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	exon	7559825	7559848	.	-	.	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	intron	7559849	7560027	.	-	.	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	CDS	7560028	7560369	0.42	-	2	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	exon	7560028	7560369	.	-	.	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	intron	7560370	7560480	.	-	.	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	CDS	7560481	7560894	1	-	2	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	exon	7560481	7560894	.	-	.	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	intron	7560895	7560986	.	-	.	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	CDS	7560987	7561098	1	-	0	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	exon	7560987	7561098	.	-	.	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
Ledus.S5	AUGUSTUS	start_codon	7561096	7561098	.	-	0	transcript_id "Ledus.S5G065100.t1"; gene_id "Ledus.S5G065100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg179.t1 is derived from g7040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	549534	552547	.	-	.	Ledus.S2G006100
Ledus.S2	AUGUSTUS	transcript	549534	552547	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	stop_codon	549531	549533	.	-	0	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	549534	549634	1	-	2	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	549534	549634	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	549635	549720	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	549721	549863	1	-	1	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	549721	549863	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	549864	549938	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	549939	550003	1	-	0	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	549939	550003	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	550004	550095	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	550096	550152	1	-	0	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	550096	550152	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	550153	550222	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	550223	550298	1	-	1	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	550223	550298	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	550299	550391	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	550392	550503	1	-	2	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	550392	550503	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	550504	550594	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	550595	550679	1	-	0	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	550595	550679	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	550680	550812	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	550813	551073	1	-	0	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	550813	551073	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	551074	551172	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	551173	551280	1	-	0	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	551173	551280	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	551281	551374	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	551375	551452	1	-	0	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	551375	551452	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	551453	551582	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	551583	551687	1	-	0	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	551583	551687	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	551688	551767	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	551768	551862	1	-	2	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	551768	551862	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	551863	551943	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	551944	552005	0.97	-	1	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	551944	552005	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	intron	552006	552107	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	CDS	552108	552547	0.63	-	0	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	exon	552108	552547	.	-	.	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
Ledus.S2	AUGUSTUS	start_codon	552545	552547	.	-	0	transcript_id "Ledus.S2G006100.t1"; gene_id "Ledus.S2G006100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1454.t1 is derived from g8315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10290664	10295038	.	+	.	Ledus.S2G133600
Ledus.S2	AUGUSTUS	transcript	10290664	10295038	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	start_codon	10290664	10290666	.	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10290664	10290720	1	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10290664	10290720	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10290721	10290802	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10290803	10290988	0.99	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10290803	10290988	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10290989	10291105	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10291106	10291211	1	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10291106	10291211	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10291212	10291311	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10291312	10291448	1	+	2	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10291312	10291448	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10291449	10291594	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10291595	10291678	1	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10291595	10291678	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10291679	10291773	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10291774	10291868	1	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10291774	10291868	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10291869	10292084	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10292085	10292190	1	+	1	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10292085	10292190	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10292191	10292392	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10292393	10292479	1	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10292393	10292479	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10292480	10292594	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10292595	10292687	1	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10292595	10292687	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10292688	10292769	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10292770	10292967	1	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10292770	10292967	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10292968	10293068	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10293069	10293223	1	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10293069	10293223	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10293224	10293319	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10293320	10293476	1	+	1	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10293320	10293476	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10293477	10293619	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10293620	10293742	1	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10293620	10293742	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10293743	10293831	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10293832	10294017	1	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10293832	10294017	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10294018	10294168	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10294169	10294247	1	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10294169	10294247	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10294248	10294370	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10294371	10294514	0.43	+	2	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10294371	10294514	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10294515	10294866	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10294867	10294945	0.36	+	2	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10294867	10294945	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	intron	10294946	10295034	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	CDS	10295035	10295038	1	+	1	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	exon	10295035	10295038	.	+	.	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
Ledus.S2	AUGUSTUS	stop_codon	10295039	10295041	.	+	0	transcript_id "Ledus.S2G133600.t1"; gene_id "Ledus.S2G133600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3215.t1 is derived from g650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6948831	6955463	.	-	.	Ledus.S1G063600
Ledus.S1	AUGUSTUS	transcript	6948831	6955463	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	stop_codon	6948828	6948830	.	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6948831	6948914	0.99	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6948831	6948914	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6948915	6949014	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6949015	6949095	1	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6949015	6949095	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6949096	6949232	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6949233	6949406	0.99	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6949233	6949406	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6949407	6949516	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6949517	6949573	0.99	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6949517	6949573	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6949574	6949687	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6949688	6949739	0.99	-	1	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6949688	6949739	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6949740	6949874	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6949875	6949963	1	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6949875	6949963	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6949964	6950121	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6950122	6950207	1	-	2	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6950122	6950207	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6950208	6950701	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6950702	6950912	1	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6950702	6950912	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6950913	6951029	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6951030	6951122	1	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6951030	6951122	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6951123	6951296	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6951297	6951437	1	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6951297	6951437	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6951438	6951578	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6951579	6951671	1	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6951579	6951671	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6951672	6951899	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6951900	6952140	1	-	1	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6951900	6952140	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6952141	6952425	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6952426	6952598	1	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6952426	6952598	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6952599	6952704	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6952705	6954015	1	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6952705	6954015	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6954016	6954135	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6954136	6954321	0.96	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6954136	6954321	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	intron	6954322	6954482	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	CDS	6954483	6955463	0.77	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	exon	6954483	6955463	.	-	.	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
Ledus.S1	AUGUSTUS	start_codon	6955461	6955463	.	-	0	transcript_id "Ledus.S1G063600.t1"; gene_id "Ledus.S1G063600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6175.t1 is derived from g3618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29399312	29402291	.	-	.	Ledus.S1G359600
Ledus.S1	AUGUSTUS	transcript	29399312	29402291	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	stop_codon	29399309	29399311	.	-	0	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	CDS	29399312	29399373	0.56	-	2	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	exon	29399312	29399373	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	intron	29399374	29399537	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	CDS	29399538	29399691	0.75	-	0	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	exon	29399538	29399691	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	intron	29399692	29399779	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	CDS	29399780	29399985	1	-	2	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	exon	29399780	29399985	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	intron	29399986	29400071	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	CDS	29400072	29400130	1	-	1	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	exon	29400072	29400130	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	intron	29400131	29400219	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	CDS	29400220	29400371	1	-	0	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	exon	29400220	29400371	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	intron	29400372	29400490	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	CDS	29400491	29401000	0.99	-	0	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	exon	29400491	29401000	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	intron	29401001	29401135	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	CDS	29401136	29401641	1	-	2	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	exon	29401136	29401641	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	intron	29401642	29401726	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	CDS	29401727	29402291	1	-	0	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	exon	29401727	29402291	.	-	.	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
Ledus.S1	AUGUSTUS	start_codon	29402289	29402291	.	-	0	transcript_id "Ledus.S1G359600.t1"; gene_id "Ledus.S1G359600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12944.t1 is derived from g6754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	300537	300833	.	-	.	Ledus.S6G000600
Ledus.S6	AUGUSTUS	transcript	300537	300833	.	-	.	transcript_id "Ledus.S6G000600.t1"; gene_id "Ledus.S6G000600"
Ledus.S6	AUGUSTUS	stop_codon	300534	300536	.	-	0	transcript_id "Ledus.S6G000600.t1"; gene_id "Ledus.S6G000600"
Ledus.S6	AUGUSTUS	CDS	300537	300833	0.35	-	0	transcript_id "Ledus.S6G000600.t1"; gene_id "Ledus.S6G000600"
Ledus.S6	AUGUSTUS	exon	300537	300833	.	-	.	transcript_id "Ledus.S6G000600.t1"; gene_id "Ledus.S6G000600"
Ledus.S6	AUGUSTUS	start_codon	300831	300833	.	-	0	transcript_id "Ledus.S6G000600.t1"; gene_id "Ledus.S6G000600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2075.t1 is derived from g8938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14578718	14579736	.	-	.	Ledus.S2G195700
Ledus.S2	AUGUSTUS	transcript	14578718	14579736	.	-	.	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	stop_codon	14578715	14578717	.	-	0	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	CDS	14578718	14578873	0.78	-	0	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	exon	14578718	14578873	.	-	.	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	intron	14578874	14578971	.	-	.	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	CDS	14578972	14579028	1	-	0	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	exon	14578972	14579028	.	-	.	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	intron	14579029	14579148	.	-	.	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	CDS	14579149	14579376	0.09	-	0	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	exon	14579149	14579376	.	-	.	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	intron	14579377	14579631	.	-	.	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	CDS	14579632	14579736	0.22	-	0	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	exon	14579632	14579736	.	-	.	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
Ledus.S2	AUGUSTUS	start_codon	14579734	14579736	.	-	0	transcript_id "Ledus.S2G195700.t1"; gene_id "Ledus.S2G195700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8313.t1 is derived from g12985.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10684108	10685195	.	-	.	Ledus.S5G109100
Ledus.S5	AUGUSTUS	transcript	10684108	10685195	.	-	.	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	stop_codon	10684105	10684107	.	-	0	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	CDS	10684108	10684243	0.64	-	1	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	exon	10684108	10684243	.	-	.	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	intron	10684244	10684482	.	-	.	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	CDS	10684483	10684526	0.65	-	0	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	exon	10684483	10684526	.	-	.	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	intron	10684527	10684731	.	-	.	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	CDS	10684732	10684817	0.88	-	2	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	exon	10684732	10684817	.	-	.	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	intron	10684818	10684915	.	-	.	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	CDS	10684916	10685195	0.4	-	0	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	exon	10684916	10685195	.	-	.	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
Ledus.S5	AUGUSTUS	start_codon	10685193	10685195	.	-	0	transcript_id "Ledus.S5G109100.t1"; gene_id "Ledus.S5G109100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12012.t1 is derived from g5631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8674402	8676404	.	+	.	Ledus.S4G116800
Ledus.S4	AUGUSTUS	transcript	8674402	8676404	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	start_codon	8674402	8674404	.	+	0	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	CDS	8674402	8674599	0.99	+	0	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	exon	8674402	8674599	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	intron	8674600	8674691	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	CDS	8674692	8674772	1	+	0	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	exon	8674692	8674772	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	intron	8674773	8674841	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	CDS	8674842	8674937	0.97	+	0	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	exon	8674842	8674937	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	intron	8674938	8675040	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	CDS	8675041	8675124	0.88	+	0	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	exon	8675041	8675124	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	intron	8675125	8675242	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	CDS	8675243	8675312	1	+	0	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	exon	8675243	8675312	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	intron	8675313	8675401	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	CDS	8675402	8675484	1	+	2	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	exon	8675402	8675484	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	intron	8675485	8675584	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	CDS	8675585	8675664	1	+	0	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	exon	8675585	8675664	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	intron	8675665	8675758	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	CDS	8675759	8675857	1	+	1	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	exon	8675759	8675857	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	intron	8675858	8675955	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	CDS	8675956	8676064	1	+	1	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	exon	8675956	8676064	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	intron	8676065	8676152	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	CDS	8676153	8676242	1	+	0	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	exon	8676153	8676242	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	intron	8676243	8676368	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	CDS	8676369	8676404	0.98	+	0	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	exon	8676369	8676404	.	+	.	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
Ledus.S4	AUGUSTUS	stop_codon	8676405	8676407	.	+	0	transcript_id "Ledus.S4G116800.t1"; gene_id "Ledus.S4G116800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4078.t1 is derived from g1514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14499556	14502142	.	-	.	Ledus.S1G149900
Ledus.S1	AUGUSTUS	transcript	14499556	14502142	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	stop_codon	14499553	14499555	.	-	0	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	CDS	14499556	14499648	0.69	-	0	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	exon	14499556	14499648	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	intron	14499649	14499735	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	CDS	14499736	14499843	1	-	0	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	exon	14499736	14499843	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	intron	14499844	14499937	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	CDS	14499938	14500104	1	-	2	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	exon	14499938	14500104	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	intron	14500105	14500194	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	CDS	14500195	14500321	1	-	0	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	exon	14500195	14500321	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	intron	14500322	14500418	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	CDS	14500419	14500580	1	-	0	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	exon	14500419	14500580	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	intron	14500581	14500662	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	CDS	14500663	14500826	1	-	2	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	exon	14500663	14500826	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	intron	14500827	14500919	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	CDS	14500920	14501013	1	-	0	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	exon	14500920	14501013	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	intron	14501014	14501134	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	CDS	14501135	14501259	0.99	-	2	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	exon	14501135	14501259	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	intron	14501260	14501360	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	CDS	14501361	14501506	1	-	1	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	exon	14501361	14501506	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	intron	14501507	14501642	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	CDS	14501643	14501731	1	-	0	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	exon	14501643	14501731	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	intron	14501732	14501827	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	CDS	14501828	14501893	1	-	0	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	exon	14501828	14501893	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	intron	14501894	14502013	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	CDS	14502014	14502142	0.74	-	0	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	exon	14502014	14502142	.	-	.	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
Ledus.S1	AUGUSTUS	start_codon	14502140	14502142	.	-	0	transcript_id "Ledus.S1G149900.t1"; gene_id "Ledus.S1G149900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7062.t1 is derived from g6593.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1153900	1155082	.	-	.	Ledus.C7G012300
Ledus.C7	AUGUSTUS	transcript	1153900	1155082	.	-	.	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	stop_codon	1153897	1153899	.	-	0	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	CDS	1153900	1154115	0.46	-	0	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	exon	1153900	1154115	.	-	.	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	intron	1154116	1154233	.	-	.	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	CDS	1154234	1154331	0.98	-	2	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	exon	1154234	1154331	.	-	.	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	intron	1154332	1154494	.	-	.	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	CDS	1154495	1154647	1	-	2	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	exon	1154495	1154647	.	-	.	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	intron	1154648	1154763	.	-	.	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	CDS	1154764	1155082	0.98	-	0	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	exon	1154764	1155082	.	-	.	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
Ledus.C7	AUGUSTUS	start_codon	1155080	1155082	.	-	0	transcript_id "Ledus.C7G012300.t1"; gene_id "Ledus.C7G012300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11396.t1 is derived from g5014.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3998705	4001764	.	+	.	Ledus.S4G055200
Ledus.S4	AUGUSTUS	transcript	3998705	4001764	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	start_codon	3998705	3998707	.	+	0	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	3998705	3998773	0.95	+	0	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	3998705	3998773	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	intron	3998774	3998860	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	3998861	3998986	1	+	0	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	3998861	3998986	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	intron	3998987	3999077	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	3999078	3999183	1	+	0	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	3999078	3999183	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	intron	3999184	3999262	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	3999263	3999396	1	+	2	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	3999263	3999396	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	intron	3999397	3999483	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	3999484	3999640	0.98	+	0	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	3999484	3999640	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	intron	3999641	3999729	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	3999730	3999908	0.81	+	2	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	3999730	3999908	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	intron	3999909	4000081	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	4000082	4000158	0.72	+	0	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	4000082	4000158	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	intron	4000159	4000256	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	4000257	4000342	0.87	+	1	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	4000257	4000342	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	intron	4000343	4000431	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	4000432	4000521	1	+	2	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	4000432	4000521	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	intron	4000522	4000613	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	4000614	4000759	1	+	2	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	4000614	4000759	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	intron	4000760	4000858	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	4000859	4000972	0.99	+	0	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	4000859	4000972	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	intron	4000973	4001087	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	4001088	4001176	0.99	+	0	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	4001088	4001176	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	intron	4001177	4001265	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	CDS	4001266	4001764	0.77	+	1	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	exon	4001266	4001764	.	+	.	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
Ledus.S4	AUGUSTUS	stop_codon	4001765	4001767	.	+	0	transcript_id "Ledus.S4G055200.t1"; gene_id "Ledus.S4G055200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6441.t1 is derived from g3884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31267497	31268941	.	-	.	Ledus.S1G386200
Ledus.S1	AUGUSTUS	transcript	31267497	31268941	.	-	.	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	stop_codon	31267494	31267496	.	-	0	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	CDS	31267497	31267527	0.71	-	1	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	exon	31267497	31267527	.	-	.	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	intron	31267528	31267633	.	-	.	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	CDS	31267634	31267820	0.7	-	2	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	exon	31267634	31267820	.	-	.	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	intron	31267821	31268030	.	-	.	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	CDS	31268031	31268169	1	-	0	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	exon	31268031	31268169	.	-	.	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	intron	31268170	31268246	.	-	.	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	CDS	31268247	31268319	1	-	1	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	exon	31268247	31268319	.	-	.	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	intron	31268320	31268927	.	-	.	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	CDS	31268928	31268941	0.59	-	0	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	exon	31268928	31268941	.	-	.	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
Ledus.S1	AUGUSTUS	start_codon	31268939	31268941	.	-	0	transcript_id "Ledus.S1G386200.t1"; gene_id "Ledus.S1G386200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1300.t1 is derived from g8161.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9173650	9178751	.	+	.	Ledus.S2G118200
Ledus.S2	AUGUSTUS	transcript	9173650	9178751	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	start_codon	9173650	9173652	.	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9173650	9173775	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9173650	9173775	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9173776	9173931	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9173932	9174036	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9173932	9174036	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9174037	9174122	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9174123	9174239	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9174123	9174239	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9174240	9174321	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9174322	9174462	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9174322	9174462	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9174463	9174648	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9174649	9174748	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9174649	9174748	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9174749	9174827	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9174828	9174955	1	+	2	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9174828	9174955	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9174956	9175044	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9175045	9175116	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9175045	9175116	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9175117	9175216	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9175217	9175281	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9175217	9175281	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9175282	9175382	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9175383	9175443	1	+	1	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9175383	9175443	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9175444	9175525	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9175526	9175643	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9175526	9175643	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9175644	9175799	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9175800	9175924	1	+	2	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9175800	9175924	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9175925	9176003	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9176004	9176080	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9176004	9176080	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9176081	9177625	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9177626	9177731	1	+	1	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9177626	9177731	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9177732	9177811	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9177812	9177871	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9177812	9177871	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9177872	9177998	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9177999	9178079	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9177999	9178079	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9178080	9178205	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9178206	9178445	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9178206	9178445	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	intron	9178446	9178583	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	CDS	9178584	9178751	1	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	exon	9178584	9178751	.	+	.	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
Ledus.S2	AUGUSTUS	stop_codon	9178752	9178754	.	+	0	transcript_id "Ledus.S2G118200.t1"; gene_id "Ledus.S2G118200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2695.t1 is derived from g128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1997060	1997515	.	-	.	Ledus.S1G011600
Ledus.S1	AUGUSTUS	transcript	1997060	1997515	.	-	.	transcript_id "Ledus.S1G011600.t1"; gene_id "Ledus.S1G011600"
Ledus.S1	AUGUSTUS	stop_codon	1997057	1997059	.	-	0	transcript_id "Ledus.S1G011600.t1"; gene_id "Ledus.S1G011600"
Ledus.S1	AUGUSTUS	CDS	1997060	1997515	0.52	-	0	transcript_id "Ledus.S1G011600.t1"; gene_id "Ledus.S1G011600"
Ledus.S1	AUGUSTUS	exon	1997060	1997515	.	-	.	transcript_id "Ledus.S1G011600.t1"; gene_id "Ledus.S1G011600"
Ledus.S1	AUGUSTUS	start_codon	1997513	1997515	.	-	0	transcript_id "Ledus.S1G011600.t1"; gene_id "Ledus.S1G011600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6042.t1 is derived from g3485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28655134	28658004	.	+	.	Ledus.S1G346300
Ledus.S1	AUGUSTUS	transcript	28655134	28658004	.	+	.	transcript_id "Ledus.S1G346300.t1"; gene_id "Ledus.S1G346300"
Ledus.S1	AUGUSTUS	start_codon	28655134	28655136	.	+	0	transcript_id "Ledus.S1G346300.t1"; gene_id "Ledus.S1G346300"
Ledus.S1	AUGUSTUS	CDS	28655134	28655353	0.88	+	0	transcript_id "Ledus.S1G346300.t1"; gene_id "Ledus.S1G346300"
Ledus.S1	AUGUSTUS	exon	28655134	28655353	.	+	.	transcript_id "Ledus.S1G346300.t1"; gene_id "Ledus.S1G346300"
Ledus.S1	AUGUSTUS	intron	28655354	28655449	.	+	.	transcript_id "Ledus.S1G346300.t1"; gene_id "Ledus.S1G346300"
Ledus.S1	AUGUSTUS	CDS	28655450	28655567	0.85	+	2	transcript_id "Ledus.S1G346300.t1"; gene_id "Ledus.S1G346300"
Ledus.S1	AUGUSTUS	exon	28655450	28655567	.	+	.	transcript_id "Ledus.S1G346300.t1"; gene_id "Ledus.S1G346300"
Ledus.S1	AUGUSTUS	intron	28655568	28655651	.	+	.	transcript_id "Ledus.S1G346300.t1"; gene_id "Ledus.S1G346300"
Ledus.S1	AUGUSTUS	CDS	28655652	28658004	0.35	+	1	transcript_id "Ledus.S1G346300.t1"; gene_id "Ledus.S1G346300"
Ledus.S1	AUGUSTUS	exon	28655652	28658004	.	+	.	transcript_id "Ledus.S1G346300.t1"; gene_id "Ledus.S1G346300"
Ledus.S1	AUGUSTUS	stop_codon	28658005	28658007	.	+	0	transcript_id "Ledus.S1G346300.t1"; gene_id "Ledus.S1G346300"
# This transcript jg5501.t2 is derived from g2940.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5502.t1 is derived from g2941.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24647283	24648000	.	-	.	Ledus.S1G292300
Ledus.S1	AUGUSTUS	transcript	24647283	24648000	.	-	.	transcript_id "Ledus.S1G292300.t1"; gene_id "Ledus.S1G292300"
Ledus.S1	AUGUSTUS	stop_codon	24647280	24647282	.	-	0	transcript_id "Ledus.S1G292300.t1"; gene_id "Ledus.S1G292300"
Ledus.S1	AUGUSTUS	CDS	24647283	24647626	0.32	-	2	transcript_id "Ledus.S1G292300.t1"; gene_id "Ledus.S1G292300"
Ledus.S1	AUGUSTUS	exon	24647283	24647626	.	-	.	transcript_id "Ledus.S1G292300.t1"; gene_id "Ledus.S1G292300"
Ledus.S1	AUGUSTUS	intron	24647627	24647882	.	-	.	transcript_id "Ledus.S1G292300.t1"; gene_id "Ledus.S1G292300"
Ledus.S1	AUGUSTUS	CDS	24647883	24648000	0.73	-	0	transcript_id "Ledus.S1G292300.t1"; gene_id "Ledus.S1G292300"
Ledus.S1	AUGUSTUS	exon	24647883	24648000	.	-	.	transcript_id "Ledus.S1G292300.t1"; gene_id "Ledus.S1G292300"
Ledus.S1	AUGUSTUS	start_codon	24647998	24648000	.	-	0	transcript_id "Ledus.S1G292300.t1"; gene_id "Ledus.S1G292300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12578.t1 is derived from g6200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12938697	12940695	.	-	.	Ledus.S4G173400
Ledus.S4	AUGUSTUS	transcript	12938697	12940695	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	stop_codon	12938694	12938696	.	-	0	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	CDS	12938697	12938803	1	-	2	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	exon	12938697	12938803	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	intron	12938804	12938883	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	CDS	12938884	12939037	1	-	0	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	exon	12938884	12939037	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	intron	12939038	12939133	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	CDS	12939134	12939199	1	-	0	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	exon	12939134	12939199	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	intron	12939200	12939288	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	CDS	12939289	12939455	1	-	2	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	exon	12939289	12939455	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	intron	12939456	12939535	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	CDS	12939536	12939577	1	-	2	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	exon	12939536	12939577	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	intron	12939578	12939659	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	CDS	12939660	12939789	1	-	0	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	exon	12939660	12939789	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	intron	12939790	12939892	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	CDS	12939893	12939965	0.97	-	1	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	exon	12939893	12939965	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	intron	12939966	12940064	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	CDS	12940065	12940431	1	-	2	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	exon	12940065	12940431	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	intron	12940432	12940529	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	CDS	12940530	12940695	0.87	-	0	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	exon	12940530	12940695	.	-	.	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
Ledus.S4	AUGUSTUS	start_codon	12940693	12940695	.	-	0	transcript_id "Ledus.S4G173400.t1"; gene_id "Ledus.S4G173400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8485.t1 is derived from g13157.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12173146	12174131	.	+	.	Ledus.S5G126300
Ledus.S5	AUGUSTUS	transcript	12173146	12174131	.	+	.	transcript_id "Ledus.S5G126300.t1"; gene_id "Ledus.S5G126300"
Ledus.S5	AUGUSTUS	start_codon	12173146	12173148	.	+	0	transcript_id "Ledus.S5G126300.t1"; gene_id "Ledus.S5G126300"
Ledus.S5	AUGUSTUS	CDS	12173146	12173384	0.81	+	0	transcript_id "Ledus.S5G126300.t1"; gene_id "Ledus.S5G126300"
Ledus.S5	AUGUSTUS	exon	12173146	12173384	.	+	.	transcript_id "Ledus.S5G126300.t1"; gene_id "Ledus.S5G126300"
Ledus.S5	AUGUSTUS	intron	12173385	12173461	.	+	.	transcript_id "Ledus.S5G126300.t1"; gene_id "Ledus.S5G126300"
Ledus.S5	AUGUSTUS	CDS	12173462	12174131	0.77	+	1	transcript_id "Ledus.S5G126300.t1"; gene_id "Ledus.S5G126300"
Ledus.S5	AUGUSTUS	exon	12173462	12174131	.	+	.	transcript_id "Ledus.S5G126300.t1"; gene_id "Ledus.S5G126300"
Ledus.S5	AUGUSTUS	stop_codon	12174132	12174134	.	+	0	transcript_id "Ledus.S5G126300.t1"; gene_id "Ledus.S5G126300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4832.t1 is derived from g2270.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20052684	20052986	.	+	.	Ledus.S1G225300
Ledus.S1	AUGUSTUS	transcript	20052684	20052986	.	+	.	transcript_id "Ledus.S1G225300.t1"; gene_id "Ledus.S1G225300"
Ledus.S1	AUGUSTUS	start_codon	20052684	20052686	.	+	0	transcript_id "Ledus.S1G225300.t1"; gene_id "Ledus.S1G225300"
Ledus.S1	AUGUSTUS	CDS	20052684	20052986	0.72	+	0	transcript_id "Ledus.S1G225300.t1"; gene_id "Ledus.S1G225300"
Ledus.S1	AUGUSTUS	exon	20052684	20052986	.	+	.	transcript_id "Ledus.S1G225300.t1"; gene_id "Ledus.S1G225300"
Ledus.S1	AUGUSTUS	stop_codon	20052987	20052989	.	+	0	transcript_id "Ledus.S1G225300.t1"; gene_id "Ledus.S1G225300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10915.t1 is derived from g4533.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	544616	544825	.	+	.	Ledus.S4G007100
Ledus.S4	AUGUSTUS	transcript	544616	544825	.	+	.	transcript_id "Ledus.S4G007100.t1"; gene_id "Ledus.S4G007100"
Ledus.S4	AUGUSTUS	start_codon	544616	544618	.	+	0	transcript_id "Ledus.S4G007100.t1"; gene_id "Ledus.S4G007100"
Ledus.S4	AUGUSTUS	CDS	544616	544825	0.83	+	0	transcript_id "Ledus.S4G007100.t1"; gene_id "Ledus.S4G007100"
Ledus.S4	AUGUSTUS	exon	544616	544825	.	+	.	transcript_id "Ledus.S4G007100.t1"; gene_id "Ledus.S4G007100"
Ledus.S4	AUGUSTUS	stop_codon	544826	544828	.	+	0	transcript_id "Ledus.S4G007100.t1"; gene_id "Ledus.S4G007100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7232.t1 is derived from g11903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	178002	180672	.	+	.	Ledus.S5G001000
Ledus.S5	AUGUSTUS	transcript	178002	180672	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	start_codon	178002	178004	.	+	0	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	CDS	178002	178249	0.93	+	0	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	exon	178002	178249	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	intron	178250	178713	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	CDS	178714	178846	1	+	1	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	exon	178714	178846	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	intron	178847	179009	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	CDS	179010	179205	1	+	0	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	exon	179010	179205	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	intron	179206	179303	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	CDS	179304	179428	1	+	2	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	exon	179304	179428	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	intron	179429	179613	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	CDS	179614	179772	1	+	0	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	exon	179614	179772	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	intron	179773	179948	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	CDS	179949	180316	0.66	+	0	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	exon	179949	180316	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	intron	180317	180587	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	CDS	180588	180672	0.85	+	1	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	exon	180588	180672	.	+	.	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
Ledus.S5	AUGUSTUS	stop_codon	180767	180769	.	+	0	transcript_id "Ledus.S5G001000.t1"; gene_id "Ledus.S5G001000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4283.t1 is derived from g1719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16046799	16047797	.	+	.	Ledus.S1G170400
Ledus.S1	AUGUSTUS	transcript	16046799	16047797	.	+	.	transcript_id "Ledus.S1G170400.t1"; gene_id "Ledus.S1G170400"
Ledus.S1	AUGUSTUS	start_codon	16046799	16046801	.	+	0	transcript_id "Ledus.S1G170400.t1"; gene_id "Ledus.S1G170400"
Ledus.S1	AUGUSTUS	CDS	16046799	16047797	0.87	+	0	transcript_id "Ledus.S1G170400.t1"; gene_id "Ledus.S1G170400"
Ledus.S1	AUGUSTUS	exon	16046799	16047797	.	+	.	transcript_id "Ledus.S1G170400.t1"; gene_id "Ledus.S1G170400"
Ledus.S1	AUGUSTUS	stop_codon	16047798	16047800	.	+	0	transcript_id "Ledus.S1G170400.t1"; gene_id "Ledus.S1G170400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12562.t1 is derived from g6184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12884140	12884538	.	+	.	Ledus.S4G171800
Ledus.S4	AUGUSTUS	transcript	12884140	12884538	.	+	.	transcript_id "Ledus.S4G171800.t1"; gene_id "Ledus.S4G171800"
Ledus.S4	AUGUSTUS	start_codon	12884140	12884142	.	+	0	transcript_id "Ledus.S4G171800.t1"; gene_id "Ledus.S4G171800"
Ledus.S4	AUGUSTUS	CDS	12884140	12884538	0.86	+	0	transcript_id "Ledus.S4G171800.t1"; gene_id "Ledus.S4G171800"
Ledus.S4	AUGUSTUS	exon	12884140	12884538	.	+	.	transcript_id "Ledus.S4G171800.t1"; gene_id "Ledus.S4G171800"
Ledus.S4	AUGUSTUS	stop_codon	12884539	12884541	.	+	0	transcript_id "Ledus.S4G171800.t1"; gene_id "Ledus.S4G171800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8266.t1 is derived from g12937.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10323920	10325808	.	-	.	Ledus.S5G104400
Ledus.S5	AUGUSTUS	transcript	10323920	10325808	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	stop_codon	10323917	10323919	.	-	0	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	CDS	10323920	10324019	0.96	-	1	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	exon	10323920	10324019	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	intron	10324020	10324128	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	CDS	10324129	10324266	1	-	1	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	exon	10324129	10324266	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	intron	10324267	10324358	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	CDS	10324359	10324501	0.98	-	0	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	exon	10324359	10324501	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	intron	10324502	10324608	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	CDS	10324609	10324828	1	-	1	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	exon	10324609	10324828	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	intron	10324829	10324914	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	CDS	10324915	10325036	1	-	0	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	exon	10324915	10325036	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	intron	10325037	10325126	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	CDS	10325127	10325509	1	-	2	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	exon	10325127	10325509	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	intron	10325510	10325600	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	CDS	10325601	10325808	0.98	-	0	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	exon	10325601	10325808	.	-	.	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
Ledus.S5	AUGUSTUS	start_codon	10325806	10325808	.	-	0	transcript_id "Ledus.S5G104400.t1"; gene_id "Ledus.S5G104400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3873.t1 is derived from g1309.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13300568	13303123	.	-	.	Ledus.S1G129400
Ledus.S1	AUGUSTUS	transcript	13300568	13303123	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	stop_codon	13300565	13300567	.	-	0	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	CDS	13300568	13300711	0.99	-	0	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	exon	13300568	13300711	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	intron	13300712	13300822	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	CDS	13300823	13300925	0.95	-	1	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	exon	13300823	13300925	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	intron	13300926	13301004	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	CDS	13301005	13301072	1	-	0	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	exon	13301005	13301072	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	intron	13301073	13301176	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	CDS	13301177	13301322	0.9	-	2	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	exon	13301177	13301322	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	intron	13301323	13301461	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	CDS	13301462	13301557	1	-	2	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	exon	13301462	13301557	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	intron	13301558	13301638	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	CDS	13301639	13301741	1	-	0	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	exon	13301639	13301741	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	intron	13301742	13301829	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	CDS	13301830	13302300	0.99	-	0	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	exon	13301830	13302300	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	intron	13302301	13302393	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	CDS	13302394	13302612	0.98	-	0	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	exon	13302394	13302612	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	intron	13302613	13302703	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	CDS	13302704	13303123	0.81	-	0	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	exon	13302704	13303123	.	-	.	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
Ledus.S1	AUGUSTUS	start_codon	13303121	13303123	.	-	0	transcript_id "Ledus.S1G129400.t1"; gene_id "Ledus.S1G129400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5611.t1 is derived from g3050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25363030	25364885	.	-	.	Ledus.S1G303200
Ledus.S1	AUGUSTUS	transcript	25363030	25364885	.	-	.	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	stop_codon	25363027	25363029	.	-	0	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	CDS	25363030	25363281	1	-	0	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	exon	25363030	25363281	.	-	.	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	intron	25363282	25363365	.	-	.	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	CDS	25363366	25363419	1	-	0	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	exon	25363366	25363419	.	-	.	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	intron	25363420	25363517	.	-	.	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	CDS	25363518	25364275	0.31	-	2	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	exon	25363518	25364275	.	-	.	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	intron	25364276	25364437	.	-	.	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	CDS	25364438	25364516	0.32	-	0	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	exon	25364438	25364516	.	-	.	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	intron	25364517	25364600	.	-	.	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	CDS	25364601	25364885	0.53	-	0	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	exon	25364601	25364885	.	-	.	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
Ledus.S1	AUGUSTUS	start_codon	25364883	25364885	.	-	0	transcript_id "Ledus.S1G303200.t1"; gene_id "Ledus.S1G303200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9.t1 is derived from g9443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C35	AUGUSTUS	gene	12688	12894	.	-	.	Ledus.C35G000100
Ledus.C35	AUGUSTUS	transcript	12688	12894	.	-	.	transcript_id "Ledus.C35G000100.t1"; gene_id "Ledus.C35G000100"
Ledus.C35	AUGUSTUS	stop_codon	12685	12687	.	-	0	transcript_id "Ledus.C35G000100.t1"; gene_id "Ledus.C35G000100"
Ledus.C35	AUGUSTUS	CDS	12688	12894	0.69	-	0	transcript_id "Ledus.C35G000100.t1"; gene_id "Ledus.C35G000100"
Ledus.C35	AUGUSTUS	exon	12688	12894	.	-	.	transcript_id "Ledus.C35G000100.t1"; gene_id "Ledus.C35G000100"
Ledus.C35	AUGUSTUS	start_codon	12892	12894	.	-	0	transcript_id "Ledus.C35G000100.t1"; gene_id "Ledus.C35G000100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1969.t1 is derived from g8832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13908461	13913562	.	-	.	Ledus.S2G185100
Ledus.S2	AUGUSTUS	transcript	13908461	13913562	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	stop_codon	13908458	13908460	.	-	0	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13908461	13908461	1	-	1	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13908461	13908461	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13908462	13908551	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13908552	13908657	1	-	2	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13908552	13908657	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13908658	13908751	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13908752	13908956	1	-	0	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13908752	13908956	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13908957	13909053	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13909054	13909175	1	-	2	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13909054	13909175	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13909176	13909265	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13909266	13909346	1	-	2	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13909266	13909346	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13909347	13909615	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13909616	13909627	1	-	2	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13909616	13909627	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13909628	13910447	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13910448	13910522	0.34	-	2	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13910448	13910522	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13910523	13910686	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13910687	13910818	0.29	-	2	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13910687	13910818	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13910819	13911110	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13911111	13911321	0.19	-	0	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13911111	13911321	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13911322	13911412	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13911413	13911646	1	-	0	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13911413	13911646	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13911647	13911745	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13911746	13911887	1	-	1	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13911746	13911887	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13911888	13911971	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13911972	13912019	1	-	1	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13911972	13912019	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13912020	13912121	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13912122	13912195	1	-	0	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13912122	13912195	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13912196	13912289	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13912290	13912407	1	-	1	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13912290	13912407	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13912408	13912495	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13912496	13912584	1	-	0	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13912496	13912584	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13912585	13912683	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13912684	13912859	1	-	2	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13912684	13912859	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13912860	13912997	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13912998	13913111	1	-	2	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13912998	13913111	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13913112	13913221	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13913222	13913292	1	-	1	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13913222	13913292	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13913293	13913385	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13913386	13913432	0.9	-	0	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13913386	13913432	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	intron	13913433	13913547	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	CDS	13913548	13913562	0.8	-	0	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	exon	13913548	13913562	.	-	.	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
Ledus.S2	AUGUSTUS	start_codon	13913560	13913562	.	-	0	transcript_id "Ledus.S2G185100.t1"; gene_id "Ledus.S2G185100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3587.t1 is derived from g1023.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9830882	9832018	.	+	.	Ledus.S1G100800
Ledus.S1	AUGUSTUS	transcript	9830882	9832018	.	+	.	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	start_codon	9830882	9830884	.	+	0	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	CDS	9830882	9830970	0.65	+	0	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	exon	9830882	9830970	.	+	.	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	intron	9830971	9831132	.	+	.	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	CDS	9831133	9831370	0.26	+	1	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	exon	9831133	9831370	.	+	.	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	intron	9831371	9831558	.	+	.	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	CDS	9831559	9831642	0.32	+	0	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	exon	9831559	9831642	.	+	.	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	intron	9831643	9831814	.	+	.	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	CDS	9831815	9832018	0.7	+	0	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	exon	9831815	9832018	.	+	.	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
Ledus.S1	AUGUSTUS	stop_codon	9832019	9832021	.	+	0	transcript_id "Ledus.S1G100800.t1"; gene_id "Ledus.S1G100800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2649.t1 is derived from g82.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1154086	1155294	.	+	.	Ledus.S1G007000
Ledus.S1	AUGUSTUS	transcript	1154086	1155294	.	+	.	transcript_id "Ledus.S1G007000.t1"; gene_id "Ledus.S1G007000"
Ledus.S1	AUGUSTUS	start_codon	1154086	1154088	.	+	0	transcript_id "Ledus.S1G007000.t1"; gene_id "Ledus.S1G007000"
Ledus.S1	AUGUSTUS	CDS	1154086	1155294	1	+	0	transcript_id "Ledus.S1G007000.t1"; gene_id "Ledus.S1G007000"
Ledus.S1	AUGUSTUS	exon	1154086	1155294	.	+	.	transcript_id "Ledus.S1G007000.t1"; gene_id "Ledus.S1G007000"
Ledus.S1	AUGUSTUS	stop_codon	1155295	1155297	.	+	0	transcript_id "Ledus.S1G007000.t1"; gene_id "Ledus.S1G007000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9715.t1 is derived from g10745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9249514	9249925	.	-	.	Ledus.S3G119200
Ledus.S3	AUGUSTUS	transcript	9249514	9249925	.	-	.	transcript_id "Ledus.S3G119200.t1"; gene_id "Ledus.S3G119200"
Ledus.S3	AUGUSTUS	stop_codon	9249511	9249513	.	-	0	transcript_id "Ledus.S3G119200.t1"; gene_id "Ledus.S3G119200"
Ledus.S3	AUGUSTUS	CDS	9249514	9249731	0.55	-	2	transcript_id "Ledus.S3G119200.t1"; gene_id "Ledus.S3G119200"
Ledus.S3	AUGUSTUS	exon	9249514	9249731	.	-	.	transcript_id "Ledus.S3G119200.t1"; gene_id "Ledus.S3G119200"
Ledus.S3	AUGUSTUS	intron	9249732	9249876	.	-	.	transcript_id "Ledus.S3G119200.t1"; gene_id "Ledus.S3G119200"
Ledus.S3	AUGUSTUS	CDS	9249877	9249925	0.98	-	0	transcript_id "Ledus.S3G119200.t1"; gene_id "Ledus.S3G119200"
Ledus.S3	AUGUSTUS	exon	9249877	9249925	.	-	.	transcript_id "Ledus.S3G119200.t1"; gene_id "Ledus.S3G119200"
Ledus.S3	AUGUSTUS	start_codon	9249923	9249925	.	-	0	transcript_id "Ledus.S3G119200.t1"; gene_id "Ledus.S3G119200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3565.t1 is derived from g1001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9621411	9622793	.	-	.	Ledus.S1G098600
Ledus.S1	AUGUSTUS	transcript	9621411	9622793	.	-	.	transcript_id "Ledus.S1G098600.t1"; gene_id "Ledus.S1G098600"
Ledus.S1	AUGUSTUS	stop_codon	9621408	9621410	.	-	0	transcript_id "Ledus.S1G098600.t1"; gene_id "Ledus.S1G098600"
Ledus.S1	AUGUSTUS	CDS	9621411	9622793	0.9	-	0	transcript_id "Ledus.S1G098600.t1"; gene_id "Ledus.S1G098600"
Ledus.S1	AUGUSTUS	exon	9621411	9622793	.	-	.	transcript_id "Ledus.S1G098600.t1"; gene_id "Ledus.S1G098600"
Ledus.S1	AUGUSTUS	start_codon	9622791	9622793	.	-	0	transcript_id "Ledus.S1G098600.t1"; gene_id "Ledus.S1G098600"
Ledus.S1	AUGUSTUS	transcript	9621751	9622793	.	-	.	transcript_id "Ledus.S1G098600.t2"; gene_id "Ledus.S1G098600"
Ledus.S1	AUGUSTUS	stop_codon	9621748	9621750	.	-	0	transcript_id "Ledus.S1G098600.t2"; gene_id "Ledus.S1G098600"
Ledus.S1	AUGUSTUS	CDS	9621751	9621774	0.37	-	0	transcript_id "Ledus.S1G098600.t2"; gene_id "Ledus.S1G098600"
Ledus.S1	AUGUSTUS	exon	9621751	9621774	.	-	.	transcript_id "Ledus.S1G098600.t2"; gene_id "Ledus.S1G098600"
Ledus.S1	AUGUSTUS	intron	9621775	9621929	.	-	.	transcript_id "Ledus.S1G098600.t2"; gene_id "Ledus.S1G098600"
Ledus.S1	AUGUSTUS	CDS	9621930	9622793	0.12	-	0	transcript_id "Ledus.S1G098600.t2"; gene_id "Ledus.S1G098600"
Ledus.S1	AUGUSTUS	exon	9621930	9622793	.	-	.	transcript_id "Ledus.S1G098600.t2"; gene_id "Ledus.S1G098600"
Ledus.S1	AUGUSTUS	start_codon	9622791	9622793	.	-	0	transcript_id "Ledus.S1G098600.t2"; gene_id "Ledus.S1G098600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2947.t1 is derived from g382.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4792674	4793050	.	-	.	Ledus.S1G036800
Ledus.S1	AUGUSTUS	transcript	4792674	4793050	.	-	.	transcript_id "Ledus.S1G036800.t1"; gene_id "Ledus.S1G036800"
Ledus.S1	AUGUSTUS	stop_codon	4792671	4792673	.	-	0	transcript_id "Ledus.S1G036800.t1"; gene_id "Ledus.S1G036800"
Ledus.S1	AUGUSTUS	CDS	4792674	4792716	0.72	-	1	transcript_id "Ledus.S1G036800.t1"; gene_id "Ledus.S1G036800"
Ledus.S1	AUGUSTUS	exon	4792674	4792716	.	-	.	transcript_id "Ledus.S1G036800.t1"; gene_id "Ledus.S1G036800"
Ledus.S1	AUGUSTUS	intron	4792717	4792792	.	-	.	transcript_id "Ledus.S1G036800.t1"; gene_id "Ledus.S1G036800"
Ledus.S1	AUGUSTUS	CDS	4792793	4792956	1	-	0	transcript_id "Ledus.S1G036800.t1"; gene_id "Ledus.S1G036800"
Ledus.S1	AUGUSTUS	exon	4792793	4792956	.	-	.	transcript_id "Ledus.S1G036800.t1"; gene_id "Ledus.S1G036800"
Ledus.S1	AUGUSTUS	intron	4792957	4793035	.	-	.	transcript_id "Ledus.S1G036800.t1"; gene_id "Ledus.S1G036800"
Ledus.S1	AUGUSTUS	CDS	4793036	4793050	1	-	0	transcript_id "Ledus.S1G036800.t1"; gene_id "Ledus.S1G036800"
Ledus.S1	AUGUSTUS	exon	4793036	4793050	.	-	.	transcript_id "Ledus.S1G036800.t1"; gene_id "Ledus.S1G036800"
Ledus.S1	AUGUSTUS	start_codon	4793048	4793050	.	-	0	transcript_id "Ledus.S1G036800.t1"; gene_id "Ledus.S1G036800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1007.t1 is derived from g7868.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6656958	6657673	.	+	.	Ledus.S2G088900
Ledus.S2	AUGUSTUS	transcript	6656958	6657673	.	+	.	transcript_id "Ledus.S2G088900.t1"; gene_id "Ledus.S2G088900"
Ledus.S2	AUGUSTUS	start_codon	6656958	6656960	.	+	0	transcript_id "Ledus.S2G088900.t1"; gene_id "Ledus.S2G088900"
Ledus.S2	AUGUSTUS	CDS	6656958	6656970	0.71	+	0	transcript_id "Ledus.S2G088900.t1"; gene_id "Ledus.S2G088900"
Ledus.S2	AUGUSTUS	exon	6656958	6656970	.	+	.	transcript_id "Ledus.S2G088900.t1"; gene_id "Ledus.S2G088900"
Ledus.S2	AUGUSTUS	intron	6656971	6657233	.	+	.	transcript_id "Ledus.S2G088900.t1"; gene_id "Ledus.S2G088900"
Ledus.S2	AUGUSTUS	CDS	6657234	6657673	0.66	+	2	transcript_id "Ledus.S2G088900.t1"; gene_id "Ledus.S2G088900"
Ledus.S2	AUGUSTUS	exon	6657234	6657673	.	+	.	transcript_id "Ledus.S2G088900.t1"; gene_id "Ledus.S2G088900"
Ledus.S2	AUGUSTUS	stop_codon	6657674	6657676	.	+	0	transcript_id "Ledus.S2G088900.t1"; gene_id "Ledus.S2G088900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11044.t1 is derived from g4662.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1376868	1380927	.	+	.	Ledus.S4G020000
Ledus.S4	AUGUSTUS	transcript	1376868	1380927	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	start_codon	1376868	1376870	.	+	0	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	CDS	1376868	1376960	0.34	+	0	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	exon	1376868	1376960	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	intron	1376961	1377040	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	CDS	1377041	1377061	0.62	+	0	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	exon	1377041	1377061	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	intron	1377062	1377424	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	CDS	1377425	1377457	0.57	+	0	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	exon	1377425	1377457	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	intron	1377458	1377591	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	CDS	1377592	1379837	0.57	+	0	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	exon	1377592	1379837	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	intron	1379838	1379960	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	CDS	1379961	1380123	0.98	+	1	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	exon	1379961	1380123	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	intron	1380124	1380256	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	CDS	1380257	1380462	0.67	+	0	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	exon	1380257	1380462	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	intron	1380463	1380543	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	CDS	1380544	1380802	0.97	+	1	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	exon	1380544	1380802	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	intron	1380803	1380870	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	CDS	1380871	1380927	0.26	+	0	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	exon	1380871	1380927	.	+	.	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
Ledus.S4	AUGUSTUS	stop_codon	1380928	1380930	.	+	0	transcript_id "Ledus.S4G020000.t1"; gene_id "Ledus.S4G020000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7936.t1 is derived from g12607.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7940302	7941944	.	-	.	Ledus.S5G071400
Ledus.S5	AUGUSTUS	transcript	7940302	7941944	.	-	.	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	stop_codon	7940299	7940301	.	-	0	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	CDS	7940302	7940664	0.98	-	0	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	exon	7940302	7940664	.	-	.	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	intron	7940665	7940747	.	-	.	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	CDS	7940748	7941317	1	-	0	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	exon	7940748	7941317	.	-	.	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	intron	7941318	7941409	.	-	.	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	CDS	7941410	7941605	1	-	1	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	exon	7941410	7941605	.	-	.	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	intron	7941606	7941783	.	-	.	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	CDS	7941784	7941944	1	-	0	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	exon	7941784	7941944	.	-	.	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
Ledus.S5	AUGUSTUS	start_codon	7941942	7941944	.	-	0	transcript_id "Ledus.S5G071400.t1"; gene_id "Ledus.S5G071400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2674.t1 is derived from g107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1589305	1591437	.	+	.	Ledus.S1G009500
Ledus.S1	AUGUSTUS	transcript	1589305	1591437	.	+	.	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	start_codon	1589305	1589307	.	+	0	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	CDS	1589305	1589383	0.98	+	0	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	exon	1589305	1589383	.	+	.	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	intron	1589384	1589482	.	+	.	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	CDS	1589483	1589562	1	+	2	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	exon	1589483	1589562	.	+	.	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	intron	1589563	1589717	.	+	.	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	CDS	1589718	1589827	1	+	0	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	exon	1589718	1589827	.	+	.	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	intron	1589828	1589970	.	+	.	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	CDS	1589971	1590016	0.37	+	1	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	exon	1589971	1590016	.	+	.	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	intron	1590017	1590894	.	+	.	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	CDS	1590895	1590972	0.94	+	0	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	exon	1590895	1590972	.	+	.	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	intron	1590973	1591173	.	+	.	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	CDS	1591174	1591437	0.9	+	0	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	exon	1591174	1591437	.	+	.	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
Ledus.S1	AUGUSTUS	stop_codon	1591438	1591440	.	+	0	transcript_id "Ledus.S1G009500.t1"; gene_id "Ledus.S1G009500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10168.t1 is derived from g11198.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13432672	13434342	.	-	.	Ledus.S3G164500
Ledus.S3	AUGUSTUS	transcript	13432672	13434342	.	-	.	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	stop_codon	13432669	13432671	.	-	0	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	CDS	13432672	13432947	0.97	-	0	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	exon	13432672	13432947	.	-	.	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	intron	13432948	13433033	.	-	.	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	CDS	13433034	13433303	1	-	0	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	exon	13433034	13433303	.	-	.	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	intron	13433304	13433388	.	-	.	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	CDS	13433389	13433479	1	-	1	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	exon	13433389	13433479	.	-	.	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	intron	13433480	13433577	.	-	.	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	CDS	13433578	13433687	1	-	0	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	exon	13433578	13433687	.	-	.	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	intron	13433688	13433775	.	-	.	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	CDS	13433776	13434045	1	-	0	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	exon	13433776	13434045	.	-	.	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	intron	13434046	13434165	.	-	.	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	CDS	13434166	13434342	0.76	-	0	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	exon	13434166	13434342	.	-	.	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
Ledus.S3	AUGUSTUS	start_codon	13434340	13434342	.	-	0	transcript_id "Ledus.S3G164500.t1"; gene_id "Ledus.S3G164500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9933.t1 is derived from g10963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11300599	11301171	.	+	.	Ledus.S3G141000
Ledus.S3	AUGUSTUS	transcript	11300599	11301171	.	+	.	transcript_id "Ledus.S3G141000.t1"; gene_id "Ledus.S3G141000"
Ledus.S3	AUGUSTUS	start_codon	11300599	11300601	.	+	0	transcript_id "Ledus.S3G141000.t1"; gene_id "Ledus.S3G141000"
Ledus.S3	AUGUSTUS	CDS	11300599	11301171	0.32	+	0	transcript_id "Ledus.S3G141000.t1"; gene_id "Ledus.S3G141000"
Ledus.S3	AUGUSTUS	exon	11300599	11301171	.	+	.	transcript_id "Ledus.S3G141000.t1"; gene_id "Ledus.S3G141000"
Ledus.S3	AUGUSTUS	stop_codon	11301172	11301174	.	+	0	transcript_id "Ledus.S3G141000.t1"; gene_id "Ledus.S3G141000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12907.t1 is derived from g4399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	207518	208963	.	-	.	Ledus.C9G001500
Ledus.C9	AUGUSTUS	transcript	207518	208963	.	-	.	transcript_id "Ledus.C9G001500.t1"; gene_id "Ledus.C9G001500"
Ledus.C9	AUGUSTUS	stop_codon	207515	207517	.	-	0	transcript_id "Ledus.C9G001500.t1"; gene_id "Ledus.C9G001500"
Ledus.C9	AUGUSTUS	CDS	207518	208963	0.85	-	0	transcript_id "Ledus.C9G001500.t1"; gene_id "Ledus.C9G001500"
Ledus.C9	AUGUSTUS	exon	207518	208963	.	-	.	transcript_id "Ledus.C9G001500.t1"; gene_id "Ledus.C9G001500"
Ledus.C9	AUGUSTUS	start_codon	208961	208963	.	-	0	transcript_id "Ledus.C9G001500.t1"; gene_id "Ledus.C9G001500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11775.t1 is derived from g5394.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6727929	6729632	.	+	.	Ledus.S4G093100
Ledus.S4	AUGUSTUS	transcript	6727929	6729632	.	+	.	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	start_codon	6727929	6727931	.	+	0	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	CDS	6727929	6728413	0.47	+	0	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	exon	6727929	6728413	.	+	.	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	intron	6728414	6728543	.	+	.	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	CDS	6728544	6728608	0.7	+	1	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	exon	6728544	6728608	.	+	.	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	intron	6728609	6728989	.	+	.	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	CDS	6728990	6729039	0.63	+	2	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	exon	6728990	6729039	.	+	.	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	intron	6729040	6729187	.	+	.	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	CDS	6729188	6729267	0.53	+	0	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	exon	6729188	6729267	.	+	.	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	intron	6729268	6729409	.	+	.	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	CDS	6729410	6729632	0.38	+	1	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	exon	6729410	6729632	.	+	.	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
Ledus.S4	AUGUSTUS	stop_codon	6729633	6729635	.	+	0	transcript_id "Ledus.S4G093100.t1"; gene_id "Ledus.S4G093100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8141.t1 is derived from g12812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9352367	9353218	.	+	.	Ledus.S5G091900
Ledus.S5	AUGUSTUS	transcript	9352367	9353218	.	+	.	transcript_id "Ledus.S5G091900.t1"; gene_id "Ledus.S5G091900"
Ledus.S5	AUGUSTUS	start_codon	9352367	9352369	.	+	0	transcript_id "Ledus.S5G091900.t1"; gene_id "Ledus.S5G091900"
Ledus.S5	AUGUSTUS	CDS	9352367	9352505	0.73	+	0	transcript_id "Ledus.S5G091900.t1"; gene_id "Ledus.S5G091900"
Ledus.S5	AUGUSTUS	exon	9352367	9352505	.	+	.	transcript_id "Ledus.S5G091900.t1"; gene_id "Ledus.S5G091900"
Ledus.S5	AUGUSTUS	intron	9352506	9352613	.	+	.	transcript_id "Ledus.S5G091900.t1"; gene_id "Ledus.S5G091900"
Ledus.S5	AUGUSTUS	CDS	9352614	9352797	1	+	2	transcript_id "Ledus.S5G091900.t1"; gene_id "Ledus.S5G091900"
Ledus.S5	AUGUSTUS	exon	9352614	9352797	.	+	.	transcript_id "Ledus.S5G091900.t1"; gene_id "Ledus.S5G091900"
Ledus.S5	AUGUSTUS	intron	9352798	9352995	.	+	.	transcript_id "Ledus.S5G091900.t1"; gene_id "Ledus.S5G091900"
Ledus.S5	AUGUSTUS	CDS	9352996	9353218	0.94	+	1	transcript_id "Ledus.S5G091900.t1"; gene_id "Ledus.S5G091900"
Ledus.S5	AUGUSTUS	exon	9352996	9353218	.	+	.	transcript_id "Ledus.S5G091900.t1"; gene_id "Ledus.S5G091900"
Ledus.S5	AUGUSTUS	stop_codon	9353219	9353221	.	+	0	transcript_id "Ledus.S5G091900.t1"; gene_id "Ledus.S5G091900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8759.t1 is derived from g9789.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1862916	1865408	.	+	.	Ledus.S3G023600
Ledus.S3	AUGUSTUS	transcript	1862916	1865408	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	start_codon	1862916	1862918	.	+	0	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1862916	1863041	0.99	+	0	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1862916	1863041	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1863042	1863161	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1863162	1863198	1	+	0	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1863162	1863198	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1863199	1863282	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1863283	1863408	1	+	2	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1863283	1863408	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1863409	1863591	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1863592	1863674	1	+	2	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1863592	1863674	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1863675	1863772	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1863773	1863849	1	+	0	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1863773	1863849	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1863850	1864013	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1864014	1864104	1	+	1	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1864014	1864104	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1864105	1864239	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1864240	1864293	1	+	0	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1864240	1864293	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1864294	1864387	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1864388	1864483	0.99	+	0	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1864388	1864483	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1864484	1864740	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1864741	1864870	1	+	0	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1864741	1864870	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1864871	1864970	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1864971	1865032	1	+	2	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1864971	1865032	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1865033	1865112	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1865113	1865193	1	+	0	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1865113	1865193	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1865194	1865288	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1865289	1865408	1	+	0	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1865289	1865408	.	+	.	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	stop_codon	1865409	1865411	.	+	0	transcript_id "Ledus.S3G023600.t1"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	transcript	1862916	1865408	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	start_codon	1862916	1862918	.	+	0	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1862916	1863041	0.97	+	0	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1862916	1863041	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1863042	1863161	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1863162	1863198	1	+	0	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1863162	1863198	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1863199	1863282	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1863283	1863408	1	+	2	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1863283	1863408	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1863409	1863591	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1863592	1863674	1	+	2	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1863592	1863674	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1863675	1863772	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1863773	1863849	1	+	0	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1863773	1863849	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1863850	1864013	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1864014	1864104	1	+	1	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1864014	1864104	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1864105	1864239	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1864240	1864293	1	+	0	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1864240	1864293	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1864294	1864387	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1864388	1864483	0.97	+	0	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1864388	1864483	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1864484	1864593	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1864594	1864683	1	+	0	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1864594	1864683	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1864684	1864818	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1864819	1864870	1	+	0	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1864819	1864870	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1864871	1864970	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1864971	1865032	1	+	2	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1864971	1865032	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1865033	1865112	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1865113	1865193	1	+	0	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1865113	1865193	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	intron	1865194	1865288	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	CDS	1865289	1865408	1	+	0	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	exon	1865289	1865408	.	+	.	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
Ledus.S3	AUGUSTUS	stop_codon	1865409	1865411	.	+	0	transcript_id "Ledus.S3G023600.t2"; gene_id "Ledus.S3G023600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5183.t1 is derived from g2622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22254326	22255716	.	-	.	Ledus.S1G260400
Ledus.S1	AUGUSTUS	transcript	22254326	22255716	.	-	.	transcript_id "Ledus.S1G260400.t1"; gene_id "Ledus.S1G260400"
Ledus.S1	AUGUSTUS	stop_codon	22254323	22254325	.	-	0	transcript_id "Ledus.S1G260400.t1"; gene_id "Ledus.S1G260400"
Ledus.S1	AUGUSTUS	CDS	22254326	22255228	0.78	-	0	transcript_id "Ledus.S1G260400.t1"; gene_id "Ledus.S1G260400"
Ledus.S1	AUGUSTUS	exon	22254326	22255228	.	-	.	transcript_id "Ledus.S1G260400.t1"; gene_id "Ledus.S1G260400"
Ledus.S1	AUGUSTUS	intron	22255229	22255389	.	-	.	transcript_id "Ledus.S1G260400.t1"; gene_id "Ledus.S1G260400"
Ledus.S1	AUGUSTUS	CDS	22255390	22255716	0.54	-	0	transcript_id "Ledus.S1G260400.t1"; gene_id "Ledus.S1G260400"
Ledus.S1	AUGUSTUS	exon	22255390	22255716	.	-	.	transcript_id "Ledus.S1G260400.t1"; gene_id "Ledus.S1G260400"
Ledus.S1	AUGUSTUS	start_codon	22255714	22255716	.	-	0	transcript_id "Ledus.S1G260400.t1"; gene_id "Ledus.S1G260400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1645.t1 is derived from g8506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11527181	11527977	.	-	.	Ledus.S2G152700
Ledus.S2	AUGUSTUS	transcript	11527181	11527977	.	-	.	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	stop_codon	11527178	11527180	.	-	0	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	CDS	11527181	11527415	0.42	-	1	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	exon	11527181	11527415	.	-	.	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	intron	11527416	11527495	.	-	.	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	CDS	11527496	11527606	0.42	-	1	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	exon	11527496	11527606	.	-	.	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	intron	11527607	11527787	.	-	.	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	CDS	11527788	11527792	0.23	-	0	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	exon	11527788	11527792	.	-	.	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	intron	11527793	11527944	.	-	.	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	CDS	11527945	11527977	0.23	-	0	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	exon	11527945	11527977	.	-	.	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
Ledus.S2	AUGUSTUS	start_codon	11527975	11527977	.	-	0	transcript_id "Ledus.S2G152700.t1"; gene_id "Ledus.S2G152700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5673.t1 is derived from g3112.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25747967	25748182	.	+	.	Ledus.S1G309400
Ledus.S1	AUGUSTUS	transcript	25747967	25748182	.	+	.	transcript_id "Ledus.S1G309400.t1"; gene_id "Ledus.S1G309400"
Ledus.S1	AUGUSTUS	start_codon	25747967	25747969	.	+	0	transcript_id "Ledus.S1G309400.t1"; gene_id "Ledus.S1G309400"
Ledus.S1	AUGUSTUS	CDS	25747967	25748182	0.72	+	0	transcript_id "Ledus.S1G309400.t1"; gene_id "Ledus.S1G309400"
Ledus.S1	AUGUSTUS	exon	25747967	25748182	.	+	.	transcript_id "Ledus.S1G309400.t1"; gene_id "Ledus.S1G309400"
Ledus.S1	AUGUSTUS	stop_codon	25748183	25748185	.	+	0	transcript_id "Ledus.S1G309400.t1"; gene_id "Ledus.S1G309400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4465.t1 is derived from g1901.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17216184	17216697	.	-	.	Ledus.S1G188600
Ledus.S1	AUGUSTUS	transcript	17216184	17216697	.	-	.	transcript_id "Ledus.S1G188600.t1"; gene_id "Ledus.S1G188600"
Ledus.S1	AUGUSTUS	stop_codon	17216181	17216183	.	-	0	transcript_id "Ledus.S1G188600.t1"; gene_id "Ledus.S1G188600"
Ledus.S1	AUGUSTUS	CDS	17216184	17216348	0.73	-	0	transcript_id "Ledus.S1G188600.t1"; gene_id "Ledus.S1G188600"
Ledus.S1	AUGUSTUS	exon	17216184	17216348	.	-	.	transcript_id "Ledus.S1G188600.t1"; gene_id "Ledus.S1G188600"
Ledus.S1	AUGUSTUS	intron	17216349	17216421	.	-	.	transcript_id "Ledus.S1G188600.t1"; gene_id "Ledus.S1G188600"
Ledus.S1	AUGUSTUS	CDS	17216422	17216697	0.48	-	0	transcript_id "Ledus.S1G188600.t1"; gene_id "Ledus.S1G188600"
Ledus.S1	AUGUSTUS	exon	17216422	17216697	.	-	.	transcript_id "Ledus.S1G188600.t1"; gene_id "Ledus.S1G188600"
Ledus.S1	AUGUSTUS	start_codon	17216695	17216697	.	-	0	transcript_id "Ledus.S1G188600.t1"; gene_id "Ledus.S1G188600"
# This transcript jg8231.t2 is derived from g12902.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8232.t1 is derived from g12903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10066811	10071540	.	-	.	Ledus.S5G101000
Ledus.S5	AUGUSTUS	transcript	10066811	10071540	.	-	.	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	stop_codon	10066808	10066810	.	-	0	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	CDS	10066811	10069858	0.98	-	0	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	exon	10066811	10069858	.	-	.	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	intron	10069859	10070047	.	-	.	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	CDS	10070048	10070429	1	-	1	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	exon	10070048	10070429	.	-	.	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	intron	10070430	10070539	.	-	.	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	CDS	10070540	10071135	1	-	0	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	exon	10070540	10071135	.	-	.	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	intron	10071136	10071205	.	-	.	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	CDS	10071206	10071326	1	-	1	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	exon	10071206	10071326	.	-	.	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	intron	10071327	10071412	.	-	.	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	CDS	10071413	10071540	1	-	0	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	exon	10071413	10071540	.	-	.	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
Ledus.S5	AUGUSTUS	start_codon	10071538	10071540	.	-	0	transcript_id "Ledus.S5G101000.t1"; gene_id "Ledus.S5G101000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10857.t1 is derived from g4475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	144791	146881	.	+	.	Ledus.S4G001300
Ledus.S4	AUGUSTUS	transcript	144791	146881	.	+	.	transcript_id "Ledus.S4G001300.t1"; gene_id "Ledus.S4G001300"
Ledus.S4	AUGUSTUS	start_codon	144791	144793	.	+	0	transcript_id "Ledus.S4G001300.t1"; gene_id "Ledus.S4G001300"
Ledus.S4	AUGUSTUS	CDS	144791	144814	0.58	+	0	transcript_id "Ledus.S4G001300.t1"; gene_id "Ledus.S4G001300"
Ledus.S4	AUGUSTUS	exon	144791	144814	.	+	.	transcript_id "Ledus.S4G001300.t1"; gene_id "Ledus.S4G001300"
Ledus.S4	AUGUSTUS	intron	144815	145002	.	+	.	transcript_id "Ledus.S4G001300.t1"; gene_id "Ledus.S4G001300"
Ledus.S4	AUGUSTUS	CDS	145003	146440	0.51	+	0	transcript_id "Ledus.S4G001300.t1"; gene_id "Ledus.S4G001300"
Ledus.S4	AUGUSTUS	exon	145003	146440	.	+	.	transcript_id "Ledus.S4G001300.t1"; gene_id "Ledus.S4G001300"
Ledus.S4	AUGUSTUS	intron	146441	146558	.	+	.	transcript_id "Ledus.S4G001300.t1"; gene_id "Ledus.S4G001300"
Ledus.S4	AUGUSTUS	CDS	146559	146881	1	+	2	transcript_id "Ledus.S4G001300.t1"; gene_id "Ledus.S4G001300"
Ledus.S4	AUGUSTUS	exon	146559	146881	.	+	.	transcript_id "Ledus.S4G001300.t1"; gene_id "Ledus.S4G001300"
Ledus.S4	AUGUSTUS	stop_codon	146882	146884	.	+	0	transcript_id "Ledus.S4G001300.t1"; gene_id "Ledus.S4G001300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3261.t1 is derived from g696.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7163973	7165600	.	+	.	Ledus.S1G068200
Ledus.S1	AUGUSTUS	transcript	7163973	7165600	.	+	.	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	start_codon	7163973	7163975	.	+	0	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	CDS	7163973	7164335	0.86	+	0	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	exon	7163973	7164335	.	+	.	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	intron	7164336	7164421	.	+	.	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	CDS	7164422	7164622	0.93	+	0	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	exon	7164422	7164622	.	+	.	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	intron	7164623	7164708	.	+	.	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	CDS	7164709	7164831	1	+	0	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	exon	7164709	7164831	.	+	.	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	intron	7164832	7164915	.	+	.	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	CDS	7164916	7165130	1	+	0	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	exon	7164916	7165130	.	+	.	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	intron	7165131	7165200	.	+	.	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	CDS	7165201	7165600	1	+	1	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	exon	7165201	7165600	.	+	.	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
Ledus.S1	AUGUSTUS	stop_codon	7165601	7165603	.	+	0	transcript_id "Ledus.S1G068200.t1"; gene_id "Ledus.S1G068200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1874.t1 is derived from g8737.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13115806	13117382	.	+	.	Ledus.S2G175600
Ledus.S2	AUGUSTUS	transcript	13115806	13117382	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	start_codon	13115806	13115808	.	+	0	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	CDS	13115806	13115937	0.97	+	0	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	exon	13115806	13115937	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	intron	13115938	13116213	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	CDS	13116214	13116267	1	+	0	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	exon	13116214	13116267	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	intron	13116268	13116389	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	CDS	13116390	13116566	1	+	0	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	exon	13116390	13116566	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	intron	13116567	13116688	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	CDS	13116689	13116900	1	+	0	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	exon	13116689	13116900	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	intron	13116901	13117041	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	CDS	13117042	13117078	1	+	1	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	exon	13117042	13117078	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	intron	13117079	13117157	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	CDS	13117158	13117215	1	+	0	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	exon	13117158	13117215	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	intron	13117216	13117296	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	CDS	13117297	13117382	1	+	2	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	exon	13117297	13117382	.	+	.	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
Ledus.S2	AUGUSTUS	stop_codon	13117383	13117385	.	+	0	transcript_id "Ledus.S2G175600.t1"; gene_id "Ledus.S2G175600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2726.t1 is derived from g160.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2565824	2568187	.	+	.	Ledus.S1G014700
Ledus.S1	AUGUSTUS	transcript	2565824	2568187	.	+	.	transcript_id "Ledus.S1G014700.t1"; gene_id "Ledus.S1G014700"
Ledus.S1	AUGUSTUS	start_codon	2565824	2565826	.	+	0	transcript_id "Ledus.S1G014700.t1"; gene_id "Ledus.S1G014700"
Ledus.S1	AUGUSTUS	CDS	2565824	2568187	1	+	0	transcript_id "Ledus.S1G014700.t1"; gene_id "Ledus.S1G014700"
Ledus.S1	AUGUSTUS	exon	2565824	2568187	.	+	.	transcript_id "Ledus.S1G014700.t1"; gene_id "Ledus.S1G014700"
Ledus.S1	AUGUSTUS	stop_codon	2568188	2568190	.	+	0	transcript_id "Ledus.S1G014700.t1"; gene_id "Ledus.S1G014700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1694.t1 is derived from g8555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11938146	11941326	.	+	.	Ledus.S2G157600
Ledus.S2	AUGUSTUS	transcript	11938146	11941326	.	+	.	transcript_id "Ledus.S2G157600.t1"; gene_id "Ledus.S2G157600"
Ledus.S2	AUGUSTUS	start_codon	11938146	11938148	.	+	0	transcript_id "Ledus.S2G157600.t1"; gene_id "Ledus.S2G157600"
Ledus.S2	AUGUSTUS	CDS	11938146	11939384	0.98	+	0	transcript_id "Ledus.S2G157600.t1"; gene_id "Ledus.S2G157600"
Ledus.S2	AUGUSTUS	exon	11938146	11939384	.	+	.	transcript_id "Ledus.S2G157600.t1"; gene_id "Ledus.S2G157600"
Ledus.S2	AUGUSTUS	intron	11939385	11939469	.	+	.	transcript_id "Ledus.S2G157600.t1"; gene_id "Ledus.S2G157600"
Ledus.S2	AUGUSTUS	CDS	11939470	11939782	1	+	0	transcript_id "Ledus.S2G157600.t1"; gene_id "Ledus.S2G157600"
Ledus.S2	AUGUSTUS	exon	11939470	11939782	.	+	.	transcript_id "Ledus.S2G157600.t1"; gene_id "Ledus.S2G157600"
Ledus.S2	AUGUSTUS	intron	11939783	11939872	.	+	.	transcript_id "Ledus.S2G157600.t1"; gene_id "Ledus.S2G157600"
Ledus.S2	AUGUSTUS	CDS	11939873	11941326	0.96	+	2	transcript_id "Ledus.S2G157600.t1"; gene_id "Ledus.S2G157600"
Ledus.S2	AUGUSTUS	exon	11939873	11941326	.	+	.	transcript_id "Ledus.S2G157600.t1"; gene_id "Ledus.S2G157600"
Ledus.S2	AUGUSTUS	stop_codon	11941327	11941329	.	+	0	transcript_id "Ledus.S2G157600.t1"; gene_id "Ledus.S2G157600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5184.t1 is derived from g2623.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22258422	22259309	.	-	.	Ledus.S1G260500
Ledus.S1	AUGUSTUS	transcript	22258422	22259309	.	-	.	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	stop_codon	22258419	22258421	.	-	0	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	CDS	22258422	22258548	0.98	-	1	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	exon	22258422	22258548	.	-	.	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	intron	22258549	22258672	.	-	.	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	CDS	22258673	22258735	1	-	1	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	exon	22258673	22258735	.	-	.	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	intron	22258736	22258883	.	-	.	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	CDS	22258884	22258989	1	-	2	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	exon	22258884	22258989	.	-	.	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	intron	22258990	22259224	.	-	.	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	CDS	22259225	22259309	1	-	0	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	exon	22259225	22259309	.	-	.	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
Ledus.S1	AUGUSTUS	start_codon	22259307	22259309	.	-	0	transcript_id "Ledus.S1G260500.t1"; gene_id "Ledus.S1G260500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg317.t1 is derived from g7178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1597809	1598443	.	+	.	Ledus.S2G019900
Ledus.S2	AUGUSTUS	transcript	1597809	1598443	.	+	.	transcript_id "Ledus.S2G019900.t1"; gene_id "Ledus.S2G019900"
Ledus.S2	AUGUSTUS	start_codon	1597809	1597811	.	+	0	transcript_id "Ledus.S2G019900.t1"; gene_id "Ledus.S2G019900"
Ledus.S2	AUGUSTUS	CDS	1597809	1598010	0.39	+	0	transcript_id "Ledus.S2G019900.t1"; gene_id "Ledus.S2G019900"
Ledus.S2	AUGUSTUS	exon	1597809	1598010	.	+	.	transcript_id "Ledus.S2G019900.t1"; gene_id "Ledus.S2G019900"
Ledus.S2	AUGUSTUS	intron	1598011	1598094	.	+	.	transcript_id "Ledus.S2G019900.t1"; gene_id "Ledus.S2G019900"
Ledus.S2	AUGUSTUS	CDS	1598095	1598171	0.86	+	2	transcript_id "Ledus.S2G019900.t1"; gene_id "Ledus.S2G019900"
Ledus.S2	AUGUSTUS	exon	1598095	1598171	.	+	.	transcript_id "Ledus.S2G019900.t1"; gene_id "Ledus.S2G019900"
Ledus.S2	AUGUSTUS	intron	1598172	1598281	.	+	.	transcript_id "Ledus.S2G019900.t1"; gene_id "Ledus.S2G019900"
Ledus.S2	AUGUSTUS	CDS	1598282	1598443	0.84	+	0	transcript_id "Ledus.S2G019900.t1"; gene_id "Ledus.S2G019900"
Ledus.S2	AUGUSTUS	exon	1598282	1598443	.	+	.	transcript_id "Ledus.S2G019900.t1"; gene_id "Ledus.S2G019900"
Ledus.S2	AUGUSTUS	stop_codon	1598444	1598446	.	+	0	transcript_id "Ledus.S2G019900.t1"; gene_id "Ledus.S2G019900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10621.t1 is derived from g11651.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16484724	16485504	.	-	.	Ledus.S3G209800
Ledus.S3	AUGUSTUS	transcript	16484724	16485504	.	-	.	transcript_id "Ledus.S3G209800.t1"; gene_id "Ledus.S3G209800"
Ledus.S3	AUGUSTUS	stop_codon	16484721	16484723	.	-	0	transcript_id "Ledus.S3G209800.t1"; gene_id "Ledus.S3G209800"
Ledus.S3	AUGUSTUS	CDS	16484724	16485131	1	-	0	transcript_id "Ledus.S3G209800.t1"; gene_id "Ledus.S3G209800"
Ledus.S3	AUGUSTUS	exon	16484724	16485131	.	-	.	transcript_id "Ledus.S3G209800.t1"; gene_id "Ledus.S3G209800"
Ledus.S3	AUGUSTUS	intron	16485132	16485207	.	-	.	transcript_id "Ledus.S3G209800.t1"; gene_id "Ledus.S3G209800"
Ledus.S3	AUGUSTUS	CDS	16485208	16485297	1	-	0	transcript_id "Ledus.S3G209800.t1"; gene_id "Ledus.S3G209800"
Ledus.S3	AUGUSTUS	exon	16485208	16485297	.	-	.	transcript_id "Ledus.S3G209800.t1"; gene_id "Ledus.S3G209800"
Ledus.S3	AUGUSTUS	intron	16485298	16485426	.	-	.	transcript_id "Ledus.S3G209800.t1"; gene_id "Ledus.S3G209800"
Ledus.S3	AUGUSTUS	CDS	16485427	16485504	1	-	0	transcript_id "Ledus.S3G209800.t1"; gene_id "Ledus.S3G209800"
Ledus.S3	AUGUSTUS	exon	16485427	16485504	.	-	.	transcript_id "Ledus.S3G209800.t1"; gene_id "Ledus.S3G209800"
Ledus.S3	AUGUSTUS	start_codon	16485502	16485504	.	-	0	transcript_id "Ledus.S3G209800.t1"; gene_id "Ledus.S3G209800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4400.t1 is derived from g1836.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16868514	16868813	.	-	.	Ledus.S1G182100
Ledus.S1	AUGUSTUS	transcript	16868514	16868813	.	-	.	transcript_id "Ledus.S1G182100.t1"; gene_id "Ledus.S1G182100"
Ledus.S1	AUGUSTUS	stop_codon	16868511	16868513	.	-	0	transcript_id "Ledus.S1G182100.t1"; gene_id "Ledus.S1G182100"
Ledus.S1	AUGUSTUS	CDS	16868514	16868813	0.98	-	0	transcript_id "Ledus.S1G182100.t1"; gene_id "Ledus.S1G182100"
Ledus.S1	AUGUSTUS	exon	16868514	16868813	.	-	.	transcript_id "Ledus.S1G182100.t1"; gene_id "Ledus.S1G182100"
Ledus.S1	AUGUSTUS	start_codon	16868811	16868813	.	-	0	transcript_id "Ledus.S1G182100.t1"; gene_id "Ledus.S1G182100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10583.t1 is derived from g11613.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16252508	16255029	.	+	.	Ledus.S3G206000
Ledus.S3	AUGUSTUS	transcript	16252508	16255029	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	start_codon	16252508	16252510	.	+	0	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	CDS	16252508	16252627	0.91	+	0	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	exon	16252508	16252627	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	intron	16252628	16252846	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	CDS	16252847	16253008	0.52	+	0	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	exon	16252847	16253008	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	intron	16253009	16253110	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	CDS	16253111	16253229	0.53	+	0	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	exon	16253111	16253229	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	intron	16253230	16253372	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	CDS	16253373	16253447	1	+	1	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	exon	16253373	16253447	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	intron	16253448	16253615	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	CDS	16253616	16253709	1	+	1	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	exon	16253616	16253709	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	intron	16253710	16253949	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	CDS	16253950	16254009	1	+	0	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	exon	16253950	16254009	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	intron	16254010	16254103	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	CDS	16254104	16254172	1	+	0	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	exon	16254104	16254172	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	intron	16254173	16254380	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	CDS	16254381	16254479	1	+	0	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	exon	16254381	16254479	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	intron	16254480	16254598	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	CDS	16254599	16254643	1	+	0	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	exon	16254599	16254643	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	intron	16254644	16254739	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	CDS	16254740	16254842	1	+	0	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	exon	16254740	16254842	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	intron	16254843	16254940	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	CDS	16254941	16255029	0.52	+	2	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	exon	16254941	16255029	.	+	.	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
Ledus.S3	AUGUSTUS	stop_codon	16255030	16255032	.	+	0	transcript_id "Ledus.S3G206000.t1"; gene_id "Ledus.S3G206000"
# This transcript jg8820.t2 is derived from g9850.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8821.t1 is derived from g9851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2136433	2137326	.	-	.	Ledus.S3G029800
Ledus.S3	AUGUSTUS	transcript	2136433	2137326	.	-	.	transcript_id "Ledus.S3G029800.t1"; gene_id "Ledus.S3G029800"
Ledus.S3	AUGUSTUS	stop_codon	2136430	2136432	.	-	0	transcript_id "Ledus.S3G029800.t1"; gene_id "Ledus.S3G029800"
Ledus.S3	AUGUSTUS	CDS	2136433	2137084	1	-	1	transcript_id "Ledus.S3G029800.t1"; gene_id "Ledus.S3G029800"
Ledus.S3	AUGUSTUS	exon	2136433	2137084	.	-	.	transcript_id "Ledus.S3G029800.t1"; gene_id "Ledus.S3G029800"
Ledus.S3	AUGUSTUS	intron	2137085	2137171	.	-	.	transcript_id "Ledus.S3G029800.t1"; gene_id "Ledus.S3G029800"
Ledus.S3	AUGUSTUS	CDS	2137172	2137326	1	-	0	transcript_id "Ledus.S3G029800.t1"; gene_id "Ledus.S3G029800"
Ledus.S3	AUGUSTUS	exon	2137172	2137326	.	-	.	transcript_id "Ledus.S3G029800.t1"; gene_id "Ledus.S3G029800"
Ledus.S3	AUGUSTUS	start_codon	2137324	2137326	.	-	0	transcript_id "Ledus.S3G029800.t1"; gene_id "Ledus.S3G029800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7741.t1 is derived from g12412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5930544	5931569	.	+	.	Ledus.S5G051900
Ledus.S5	AUGUSTUS	transcript	5930544	5931569	.	+	.	transcript_id "Ledus.S5G051900.t1"; gene_id "Ledus.S5G051900"
Ledus.S5	AUGUSTUS	start_codon	5930544	5930546	.	+	0	transcript_id "Ledus.S5G051900.t1"; gene_id "Ledus.S5G051900"
Ledus.S5	AUGUSTUS	CDS	5930544	5930672	0.99	+	0	transcript_id "Ledus.S5G051900.t1"; gene_id "Ledus.S5G051900"
Ledus.S5	AUGUSTUS	exon	5930544	5930672	.	+	.	transcript_id "Ledus.S5G051900.t1"; gene_id "Ledus.S5G051900"
Ledus.S5	AUGUSTUS	intron	5930673	5930942	.	+	.	transcript_id "Ledus.S5G051900.t1"; gene_id "Ledus.S5G051900"
Ledus.S5	AUGUSTUS	CDS	5930943	5931074	1	+	0	transcript_id "Ledus.S5G051900.t1"; gene_id "Ledus.S5G051900"
Ledus.S5	AUGUSTUS	exon	5930943	5931074	.	+	.	transcript_id "Ledus.S5G051900.t1"; gene_id "Ledus.S5G051900"
Ledus.S5	AUGUSTUS	intron	5931075	5931251	.	+	.	transcript_id "Ledus.S5G051900.t1"; gene_id "Ledus.S5G051900"
Ledus.S5	AUGUSTUS	CDS	5931252	5931569	1	+	0	transcript_id "Ledus.S5G051900.t1"; gene_id "Ledus.S5G051900"
Ledus.S5	AUGUSTUS	exon	5931252	5931569	.	+	.	transcript_id "Ledus.S5G051900.t1"; gene_id "Ledus.S5G051900"
Ledus.S5	AUGUSTUS	stop_codon	5931570	5931572	.	+	0	transcript_id "Ledus.S5G051900.t1"; gene_id "Ledus.S5G051900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg53.t1 is derived from g9466.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	142520	147544	.	+	.	Ledus.C8G001300
Ledus.C8	AUGUSTUS	transcript	142520	147544	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	start_codon	142520	142522	.	+	0	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	CDS	142520	142759	0.67	+	0	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	exon	142520	142759	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	intron	142760	142897	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	CDS	142898	142984	1	+	0	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	exon	142898	142984	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	intron	142985	143137	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	CDS	143138	143248	1	+	0	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	exon	143138	143248	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	intron	143249	143339	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	CDS	143340	143552	1	+	0	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	exon	143340	143552	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	intron	143553	143709	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	CDS	143710	143895	1	+	0	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	exon	143710	143895	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	intron	143896	144021	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	CDS	144022	146913	0.96	+	0	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	exon	144022	146913	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	intron	146914	146995	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	CDS	146996	147544	0.8	+	0	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	exon	146996	147544	.	+	.	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
Ledus.C8	AUGUSTUS	stop_codon	147545	147547	.	+	0	transcript_id "Ledus.C8G001300.t1"; gene_id "Ledus.C8G001300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8203.t1 is derived from g12874.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9821085	9823179	.	-	.	Ledus.S5G098100
Ledus.S5	AUGUSTUS	transcript	9821085	9823179	.	-	.	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	stop_codon	9821082	9821084	.	-	0	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	CDS	9821085	9821214	0.71	-	1	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	exon	9821085	9821214	.	-	.	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	intron	9821215	9821326	.	-	.	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	CDS	9821327	9821670	0.84	-	0	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	exon	9821327	9821670	.	-	.	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	intron	9821671	9821837	.	-	.	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	CDS	9821838	9822068	0.96	-	0	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	exon	9821838	9822068	.	-	.	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	intron	9822069	9822177	.	-	.	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	CDS	9822178	9822297	1	-	0	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	exon	9822178	9822297	.	-	.	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	intron	9822298	9822450	.	-	.	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	CDS	9822451	9822571	1	-	1	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	exon	9822451	9822571	.	-	.	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	intron	9822572	9822667	.	-	.	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	CDS	9822668	9823179	0.92	-	0	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	exon	9822668	9823179	.	-	.	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
Ledus.S5	AUGUSTUS	start_codon	9823177	9823179	.	-	0	transcript_id "Ledus.S5G098100.t1"; gene_id "Ledus.S5G098100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12159.t1 is derived from g5778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10042438	10043948	.	-	.	Ledus.S4G131500
Ledus.S4	AUGUSTUS	transcript	10042438	10043948	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	stop_codon	10042435	10042437	.	-	0	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	CDS	10042438	10042575	0.78	-	0	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	exon	10042438	10042575	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	intron	10042576	10042652	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	CDS	10042653	10042727	1	-	0	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	exon	10042653	10042727	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	intron	10042728	10042832	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	CDS	10042833	10042924	0.97	-	2	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	exon	10042833	10042924	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	intron	10042925	10043025	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	CDS	10043026	10043112	0.98	-	2	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	exon	10043026	10043112	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	intron	10043113	10043206	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	CDS	10043207	10043365	1	-	2	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	exon	10043207	10043365	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	intron	10043366	10043446	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	CDS	10043447	10043545	1	-	2	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	exon	10043447	10043545	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	intron	10043546	10043642	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	CDS	10043643	10043770	1	-	1	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	exon	10043643	10043770	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	intron	10043771	10043889	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	CDS	10043890	10043948	0.94	-	0	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	exon	10043890	10043948	.	-	.	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
Ledus.S4	AUGUSTUS	start_codon	10043946	10043948	.	-	0	transcript_id "Ledus.S4G131500.t1"; gene_id "Ledus.S4G131500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7097.t1 is derived from g6628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1531907	1532659	.	-	.	Ledus.C7G015800
Ledus.C7	AUGUSTUS	transcript	1531907	1532659	.	-	.	transcript_id "Ledus.C7G015800.t1"; gene_id "Ledus.C7G015800"
Ledus.C7	AUGUSTUS	stop_codon	1531904	1531906	.	-	0	transcript_id "Ledus.C7G015800.t1"; gene_id "Ledus.C7G015800"
Ledus.C7	AUGUSTUS	CDS	1531907	1532659	0.98	-	0	transcript_id "Ledus.C7G015800.t1"; gene_id "Ledus.C7G015800"
Ledus.C7	AUGUSTUS	exon	1531907	1532659	.	-	.	transcript_id "Ledus.C7G015800.t1"; gene_id "Ledus.C7G015800"
Ledus.C7	AUGUSTUS	start_codon	1532657	1532659	.	-	0	transcript_id "Ledus.C7G015800.t1"; gene_id "Ledus.C7G015800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6043.t1 is derived from g3486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28658216	28659967	.	-	.	Ledus.S1G346400
Ledus.S1	AUGUSTUS	transcript	28658216	28659967	.	-	.	transcript_id "Ledus.S1G346400.t1"; gene_id "Ledus.S1G346400"
Ledus.S1	AUGUSTUS	stop_codon	28658213	28658215	.	-	0	transcript_id "Ledus.S1G346400.t1"; gene_id "Ledus.S1G346400"
Ledus.S1	AUGUSTUS	CDS	28658216	28659687	1	-	2	transcript_id "Ledus.S1G346400.t1"; gene_id "Ledus.S1G346400"
Ledus.S1	AUGUSTUS	exon	28658216	28659687	.	-	.	transcript_id "Ledus.S1G346400.t1"; gene_id "Ledus.S1G346400"
Ledus.S1	AUGUSTUS	intron	28659688	28659783	.	-	.	transcript_id "Ledus.S1G346400.t1"; gene_id "Ledus.S1G346400"
Ledus.S1	AUGUSTUS	CDS	28659784	28659967	0.55	-	0	transcript_id "Ledus.S1G346400.t1"; gene_id "Ledus.S1G346400"
Ledus.S1	AUGUSTUS	exon	28659784	28659967	.	-	.	transcript_id "Ledus.S1G346400.t1"; gene_id "Ledus.S1G346400"
Ledus.S1	AUGUSTUS	start_codon	28659965	28659967	.	-	0	transcript_id "Ledus.S1G346400.t1"; gene_id "Ledus.S1G346400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4974.t1 is derived from g2412.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20940498	20943356	.	+	.	Ledus.S1G239500
Ledus.S1	AUGUSTUS	transcript	20940498	20943356	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	start_codon	20940498	20940500	.	+	0	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20940498	20940727	0.58	+	0	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20940498	20940727	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20940728	20940788	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20940789	20940892	0.8	+	1	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20940789	20940892	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20940893	20940981	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20940982	20941032	1	+	2	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20940982	20941032	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20941033	20941125	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20941126	20941205	1	+	2	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20941126	20941205	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20941206	20941349	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20941350	20941394	1	+	0	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20941350	20941394	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20941395	20941522	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20941523	20941626	0.68	+	0	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20941523	20941626	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20941627	20942176	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20942177	20942500	0.46	+	1	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20942177	20942500	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20942501	20942595	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20942596	20942670	1	+	1	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20942596	20942670	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20942671	20942748	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20942749	20942812	1	+	1	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20942749	20942812	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20942813	20942893	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20942894	20943095	1	+	0	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20942894	20943095	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20943096	20943303	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20943304	20943356	0.7	+	2	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20943304	20943356	.	+	.	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	stop_codon	20943357	20943359	.	+	0	transcript_id "Ledus.S1G239500.t1"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	transcript	20940498	20943356	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	start_codon	20940498	20940500	.	+	0	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20940498	20940727	0.54	+	0	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20940498	20940727	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20940728	20940788	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20940789	20940892	0.73	+	1	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20940789	20940892	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20940893	20940981	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20940982	20941032	1	+	2	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20940982	20941032	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20941033	20941125	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20941126	20941205	1	+	2	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20941126	20941205	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20941206	20941349	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20941350	20941394	1	+	0	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20941350	20941394	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20941395	20941522	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20941523	20941626	0.63	+	0	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20941523	20941626	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20941627	20942176	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20942177	20942500	0.35	+	1	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20942177	20942500	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20942501	20942595	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20942596	20942670	1	+	1	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20942596	20942670	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20942671	20942748	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20942749	20942804	0.98	+	1	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20942749	20942804	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20942805	20942879	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20942880	20943095	0.98	+	2	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20942880	20943095	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	intron	20943096	20943303	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	CDS	20943304	20943356	0.71	+	2	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	exon	20943304	20943356	.	+	.	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
Ledus.S1	AUGUSTUS	stop_codon	20943357	20943359	.	+	0	transcript_id "Ledus.S1G239500.t2"; gene_id "Ledus.S1G239500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6734.t1 is derived from g4177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33622511	33625890	.	+	.	Ledus.S1G415500
Ledus.S1	AUGUSTUS	transcript	33622511	33625890	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	start_codon	33622511	33622513	.	+	0	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33622511	33622668	0.92	+	0	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33622511	33622668	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33622669	33622795	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33622796	33623057	0.6	+	1	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33622796	33623057	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33623058	33623184	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33623185	33623355	1	+	0	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33623185	33623355	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33623356	33623433	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33623434	33623556	1	+	0	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33623434	33623556	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33623557	33623737	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33623738	33623848	1	+	0	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33623738	33623848	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33623849	33624004	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33624005	33624142	0.98	+	0	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33624005	33624142	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33624143	33624260	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33624261	33624398	0.99	+	0	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33624261	33624398	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33624399	33624623	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33624624	33625028	1	+	0	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33624624	33625028	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33625029	33625539	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33625540	33625890	0.97	+	0	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33625540	33625890	.	+	.	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	stop_codon	33625891	33625893	.	+	0	transcript_id "Ledus.S1G415500.t1"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	transcript	33622511	33625666	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	start_codon	33622511	33622513	.	+	0	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33622511	33622668	0.94	+	0	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33622511	33622668	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33622669	33622795	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33622796	33623057	0.6	+	1	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33622796	33623057	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33623058	33623184	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33623185	33623355	1	+	0	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33623185	33623355	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33623356	33623433	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33623434	33623556	1	+	0	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33623434	33623556	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33623557	33623737	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33623738	33623848	1	+	0	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33623738	33623848	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33623849	33624004	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33624005	33624142	1	+	0	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33624005	33624142	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33624143	33624260	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33624261	33624398	1	+	0	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33624261	33624398	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33624399	33624623	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33624624	33625028	0.71	+	0	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33624624	33625028	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	intron	33625029	33625648	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	CDS	33625649	33625666	0.68	+	0	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	exon	33625649	33625666	.	+	.	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
Ledus.S1	AUGUSTUS	stop_codon	33625667	33625669	.	+	0	transcript_id "Ledus.S1G415500.t2"; gene_id "Ledus.S1G415500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6360.t1 is derived from g3803.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30748218	30751302	.	-	.	Ledus.S1G378100
Ledus.S1	AUGUSTUS	transcript	30748218	30751302	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	stop_codon	30748215	30748217	.	-	0	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30748218	30748274	0.86	-	0	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30748218	30748274	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	intron	30748275	30748383	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30748384	30748458	1	-	0	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30748384	30748458	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	intron	30748459	30748547	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30748548	30748648	1	-	2	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30748548	30748648	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	intron	30748649	30748734	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30748735	30748860	1	-	2	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30748735	30748860	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	intron	30748861	30748975	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30748976	30749224	0.94	-	2	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30748976	30749224	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	intron	30749225	30749383	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30749384	30749531	1	-	0	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30749384	30749531	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	intron	30749532	30749627	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30749628	30749745	1	-	1	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30749628	30749745	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	intron	30749746	30749875	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30749876	30749984	1	-	2	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30749876	30749984	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	intron	30749985	30750116	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30750117	30750264	1	-	0	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30750117	30750264	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	intron	30750265	30750425	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30750426	30750497	1	-	0	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30750426	30750497	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	intron	30750498	30750601	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30750602	30750771	1	-	2	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30750602	30750771	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	intron	30750772	30750934	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30750935	30751081	0.39	-	2	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30750935	30751081	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	intron	30751082	30751184	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	CDS	30751185	30751302	0.44	-	0	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	exon	30751185	30751302	.	-	.	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
Ledus.S1	AUGUSTUS	start_codon	30751300	30751302	.	-	0	transcript_id "Ledus.S1G378100.t1"; gene_id "Ledus.S1G378100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8797.t1 is derived from g9827.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2033330	2035008	.	-	.	Ledus.S3G027400
Ledus.S3	AUGUSTUS	transcript	2033330	2035008	.	-	.	transcript_id "Ledus.S3G027400.t1"; gene_id "Ledus.S3G027400"
Ledus.S3	AUGUSTUS	stop_codon	2033327	2033329	.	-	0	transcript_id "Ledus.S3G027400.t1"; gene_id "Ledus.S3G027400"
Ledus.S3	AUGUSTUS	CDS	2033330	2033827	1	-	0	transcript_id "Ledus.S3G027400.t1"; gene_id "Ledus.S3G027400"
Ledus.S3	AUGUSTUS	exon	2033330	2033827	.	-	.	transcript_id "Ledus.S3G027400.t1"; gene_id "Ledus.S3G027400"
Ledus.S3	AUGUSTUS	intron	2033828	2033917	.	-	.	transcript_id "Ledus.S3G027400.t1"; gene_id "Ledus.S3G027400"
Ledus.S3	AUGUSTUS	CDS	2033918	2034661	1	-	0	transcript_id "Ledus.S3G027400.t1"; gene_id "Ledus.S3G027400"
Ledus.S3	AUGUSTUS	exon	2033918	2034661	.	-	.	transcript_id "Ledus.S3G027400.t1"; gene_id "Ledus.S3G027400"
Ledus.S3	AUGUSTUS	intron	2034662	2034735	.	-	.	transcript_id "Ledus.S3G027400.t1"; gene_id "Ledus.S3G027400"
Ledus.S3	AUGUSTUS	CDS	2034736	2035008	0.87	-	0	transcript_id "Ledus.S3G027400.t1"; gene_id "Ledus.S3G027400"
Ledus.S3	AUGUSTUS	exon	2034736	2035008	.	-	.	transcript_id "Ledus.S3G027400.t1"; gene_id "Ledus.S3G027400"
Ledus.S3	AUGUSTUS	start_codon	2035006	2035008	.	-	0	transcript_id "Ledus.S3G027400.t1"; gene_id "Ledus.S3G027400"
# This transcript jg5260.t2 is derived from g2699.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5261.t1 is derived from g2700.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22770472	22771383	.	+	.	Ledus.S1G268200
Ledus.S1	AUGUSTUS	transcript	22770472	22771383	.	+	.	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	start_codon	22770472	22770474	.	+	0	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	CDS	22770472	22770719	0.63	+	0	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	exon	22770472	22770719	.	+	.	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	intron	22770720	22770796	.	+	.	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	CDS	22770797	22770916	1	+	1	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	exon	22770797	22770916	.	+	.	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	intron	22770917	22770991	.	+	.	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	CDS	22770992	22771175	1	+	1	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	exon	22770992	22771175	.	+	.	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	intron	22771176	22771263	.	+	.	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	CDS	22771264	22771383	1	+	0	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	exon	22771264	22771383	.	+	.	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
Ledus.S1	AUGUSTUS	stop_codon	22771384	22771386	.	+	0	transcript_id "Ledus.S1G268200.t1"; gene_id "Ledus.S1G268200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10673.t1 is derived from g11703.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17040213	17041075	.	+	.	Ledus.S3G215000
Ledus.S3	AUGUSTUS	transcript	17040213	17041075	.	+	.	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	start_codon	17040213	17040215	.	+	0	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	CDS	17040213	17040238	0.99	+	0	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	exon	17040213	17040238	.	+	.	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	intron	17040239	17040443	.	+	.	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	CDS	17040444	17040460	0.95	+	1	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	exon	17040444	17040460	.	+	.	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	intron	17040461	17040552	.	+	.	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	CDS	17040553	17040718	0.63	+	2	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	exon	17040553	17040718	.	+	.	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	intron	17040719	17040817	.	+	.	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	CDS	17040818	17040942	0.99	+	1	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	exon	17040818	17040942	.	+	.	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	intron	17040943	17041067	.	+	.	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	CDS	17041068	17041075	0.99	+	2	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	exon	17041068	17041075	.	+	.	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
Ledus.S3	AUGUSTUS	stop_codon	17041076	17041078	.	+	0	transcript_id "Ledus.S3G215000.t1"; gene_id "Ledus.S3G215000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3111.t1 is derived from g546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6016573	6018035	.	-	.	Ledus.S1G053200
Ledus.S1	AUGUSTUS	transcript	6016573	6018035	.	-	.	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	stop_codon	6016570	6016572	.	-	0	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	CDS	6016573	6016876	0.95	-	1	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	exon	6016573	6016876	.	-	.	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	intron	6016877	6016964	.	-	.	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	CDS	6016965	6017280	1	-	2	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	exon	6016965	6017280	.	-	.	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	intron	6017281	6017371	.	-	.	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	CDS	6017372	6017682	0.85	-	1	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	exon	6017372	6017682	.	-	.	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	intron	6017683	6017778	.	-	.	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	CDS	6017779	6017785	0.91	-	2	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	exon	6017779	6017785	.	-	.	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	intron	6017786	6017920	.	-	.	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	CDS	6017921	6018035	0.39	-	0	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	exon	6017921	6018035	.	-	.	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
Ledus.S1	AUGUSTUS	start_codon	6018033	6018035	.	-	0	transcript_id "Ledus.S1G053200.t1"; gene_id "Ledus.S1G053200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6772.t1 is derived from g4216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34028600	34031632	.	-	.	Ledus.S1G419300
Ledus.S1	AUGUSTUS	transcript	34028600	34030933	.	-	.	transcript_id "Ledus.S1G419300.t1"; gene_id "Ledus.S1G419300"
Ledus.S1	AUGUSTUS	stop_codon	34028597	34028599	.	-	0	transcript_id "Ledus.S1G419300.t1"; gene_id "Ledus.S1G419300"
Ledus.S1	AUGUSTUS	CDS	34028600	34030933	0.8	-	0	transcript_id "Ledus.S1G419300.t1"; gene_id "Ledus.S1G419300"
Ledus.S1	AUGUSTUS	exon	34028600	34030933	.	-	.	transcript_id "Ledus.S1G419300.t1"; gene_id "Ledus.S1G419300"
Ledus.S1	AUGUSTUS	start_codon	34030931	34030933	.	-	0	transcript_id "Ledus.S1G419300.t1"; gene_id "Ledus.S1G419300"
Ledus.S1	AUGUSTUS	transcript	34028600	34031632	.	-	.	transcript_id "Ledus.S1G419300.t2"; gene_id "Ledus.S1G419300"
Ledus.S1	AUGUSTUS	stop_codon	34028597	34028599	.	-	0	transcript_id "Ledus.S1G419300.t2"; gene_id "Ledus.S1G419300"
Ledus.S1	AUGUSTUS	CDS	34028600	34031632	0.63	-	0	transcript_id "Ledus.S1G419300.t2"; gene_id "Ledus.S1G419300"
Ledus.S1	AUGUSTUS	exon	34028600	34031632	.	-	.	transcript_id "Ledus.S1G419300.t2"; gene_id "Ledus.S1G419300"
Ledus.S1	AUGUSTUS	start_codon	34031630	34031632	.	-	0	transcript_id "Ledus.S1G419300.t2"; gene_id "Ledus.S1G419300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8462.t1 is derived from g13134.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11812569	11815125	.	+	.	Ledus.S5G124000
Ledus.S5	AUGUSTUS	transcript	11812569	11815125	.	+	.	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	start_codon	11812569	11812571	.	+	0	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	CDS	11812569	11812571	0.99	+	0	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	exon	11812569	11812571	.	+	.	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	intron	11812572	11812660	.	+	.	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	CDS	11812661	11813036	1	+	0	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	exon	11812661	11813036	.	+	.	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	intron	11813037	11813129	.	+	.	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	CDS	11813130	11813209	1	+	2	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	exon	11813130	11813209	.	+	.	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	intron	11813210	11813349	.	+	.	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	CDS	11813350	11815125	0.67	+	0	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	exon	11813350	11815125	.	+	.	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
Ledus.S5	AUGUSTUS	stop_codon	11815126	11815128	.	+	0	transcript_id "Ledus.S5G124000.t1"; gene_id "Ledus.S5G124000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10064.t1 is derived from g11094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12439899	12440237	.	+	.	Ledus.S3G154100
Ledus.S3	AUGUSTUS	transcript	12439899	12440237	.	+	.	transcript_id "Ledus.S3G154100.t1"; gene_id "Ledus.S3G154100"
Ledus.S3	AUGUSTUS	start_codon	12439899	12439901	.	+	0	transcript_id "Ledus.S3G154100.t1"; gene_id "Ledus.S3G154100"
Ledus.S3	AUGUSTUS	CDS	12439899	12440237	0.69	+	0	transcript_id "Ledus.S3G154100.t1"; gene_id "Ledus.S3G154100"
Ledus.S3	AUGUSTUS	exon	12439899	12440237	.	+	.	transcript_id "Ledus.S3G154100.t1"; gene_id "Ledus.S3G154100"
Ledus.S3	AUGUSTUS	stop_codon	12440238	12440240	.	+	0	transcript_id "Ledus.S3G154100.t1"; gene_id "Ledus.S3G154100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg380.t1 is derived from g7241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2036195	2038117	.	+	.	Ledus.S2G026200
Ledus.S2	AUGUSTUS	transcript	2036195	2038117	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	start_codon	2036195	2036197	.	+	0	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	CDS	2036195	2036457	0.84	+	0	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	exon	2036195	2036457	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	intron	2036458	2036553	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	CDS	2036554	2036712	1	+	1	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	exon	2036554	2036712	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	intron	2036713	2036805	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	CDS	2036806	2036997	1	+	1	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	exon	2036806	2036997	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	intron	2036998	2037076	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	CDS	2037077	2037303	1	+	1	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	exon	2037077	2037303	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	intron	2037304	2037382	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	CDS	2037383	2037575	1	+	2	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	exon	2037383	2037575	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	intron	2037576	2037654	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	CDS	2037655	2037847	1	+	1	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	exon	2037655	2037847	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	intron	2037848	2037928	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	CDS	2037929	2038117	0.48	+	0	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	exon	2037929	2038117	.	+	.	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
Ledus.S2	AUGUSTUS	stop_codon	2038118	2038120	.	+	0	transcript_id "Ledus.S2G026200.t1"; gene_id "Ledus.S2G026200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8339.t1 is derived from g13011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10889949	10894387	.	+	.	Ledus.S5G111700
Ledus.S5	AUGUSTUS	transcript	10889949	10894387	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	start_codon	10889949	10889951	.	+	0	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	CDS	10889949	10890175	0.78	+	0	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	exon	10889949	10890175	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	intron	10890176	10890347	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	CDS	10890348	10890529	0.81	+	1	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	exon	10890348	10890529	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	intron	10890530	10890619	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	CDS	10890620	10891216	0.97	+	2	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	exon	10890620	10891216	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	intron	10891217	10891304	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	CDS	10891305	10891381	1	+	2	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	exon	10891305	10891381	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	intron	10891382	10891467	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	CDS	10891468	10891821	1	+	0	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	exon	10891468	10891821	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	intron	10891822	10891994	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	CDS	10891995	10892324	1	+	0	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	exon	10891995	10892324	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	intron	10892325	10892472	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	CDS	10892473	10892727	1	+	0	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	exon	10892473	10892727	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	intron	10892728	10892883	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	CDS	10892884	10893105	0.69	+	0	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	exon	10892884	10893105	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	intron	10893106	10893234	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	CDS	10893235	10893739	1	+	0	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	exon	10893235	10893739	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	intron	10893740	10893826	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	CDS	10893827	10894032	1	+	2	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	exon	10893827	10894032	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	intron	10894033	10894297	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	CDS	10894298	10894387	0.21	+	0	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	exon	10894298	10894387	.	+	.	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
Ledus.S5	AUGUSTUS	stop_codon	10894388	10894390	.	+	0	transcript_id "Ledus.S5G111700.t1"; gene_id "Ledus.S5G111700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11188.t1 is derived from g4806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2504923	2505801	.	-	.	Ledus.S4G034400
Ledus.S4	AUGUSTUS	transcript	2504923	2505801	.	-	.	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	stop_codon	2504920	2504922	.	-	0	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	CDS	2504923	2504926	0.76	-	1	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	exon	2504923	2504926	.	-	.	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	intron	2504927	2505005	.	-	.	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	CDS	2505006	2505250	0.76	-	0	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	exon	2505006	2505250	.	-	.	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	intron	2505251	2505413	.	-	.	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	CDS	2505414	2505562	0.98	-	2	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	exon	2505414	2505562	.	-	.	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	intron	2505563	2505674	.	-	.	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	CDS	2505675	2505801	0.5	-	0	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	exon	2505675	2505801	.	-	.	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
Ledus.S4	AUGUSTUS	start_codon	2505799	2505801	.	-	0	transcript_id "Ledus.S4G034400.t1"; gene_id "Ledus.S4G034400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6881.t1 is derived from g4325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34928787	34933079	.	-	.	Ledus.S1G430200
Ledus.S1	AUGUSTUS	transcript	34928787	34933079	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	stop_codon	34928784	34928786	.	-	0	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34928787	34928939	0.99	-	0	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34928787	34928939	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34928940	34929048	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34929049	34929205	0.95	-	1	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34929049	34929205	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34929206	34929289	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34929290	34929429	1	-	0	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34929290	34929429	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34929430	34929572	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34929573	34929711	0.99	-	1	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34929573	34929711	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34929712	34929796	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34929797	34930068	1	-	0	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34929797	34930068	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34930069	34930153	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34930154	34930437	1	-	2	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34930154	34930437	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34930438	34930540	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34930541	34930585	0.69	-	2	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34930541	34930585	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34930586	34930692	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34930693	34931012	0.67	-	1	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34930693	34931012	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34931013	34931179	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34931180	34931251	1	-	1	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34931180	34931251	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34931252	34931381	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34931382	34931453	1	-	1	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34931382	34931453	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34931454	34931537	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34931538	34931609	0.87	-	1	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34931538	34931609	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34931610	34931712	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34931713	34931784	1	-	1	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34931713	34931784	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34931785	34931944	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34931945	34932016	1	-	1	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34931945	34932016	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34932017	34932108	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34932109	34932174	0.71	-	1	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34932109	34932174	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34932175	34932279	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34932280	34932360	0.93	-	1	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34932280	34932360	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34932361	34932450	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34932451	34932598	1	-	2	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34932451	34932598	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34932599	34932754	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34932755	34932852	0.65	-	1	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34932755	34932852	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	intron	34932853	34932960	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	CDS	34932961	34933079	0.26	-	0	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	exon	34932961	34933079	.	-	.	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
Ledus.S1	AUGUSTUS	start_codon	34933077	34933079	.	-	0	transcript_id "Ledus.S1G430200.t1"; gene_id "Ledus.S1G430200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3472.t1 is derived from g907.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8625621	8630575	.	+	.	Ledus.S1G089300
Ledus.S1	AUGUSTUS	transcript	8625621	8630575	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	start_codon	8625621	8625623	.	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8625621	8625652	0.33	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8625621	8625652	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8625653	8625869	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8625870	8625920	0.86	+	1	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8625870	8625920	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8625921	8626139	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8626140	8626230	1	+	1	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8626140	8626230	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8626231	8626633	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8626634	8626795	1	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8626634	8626795	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8626796	8626980	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8626981	8627058	1	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8626981	8627058	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8627059	8627160	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8627161	8627274	0.99	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8627161	8627274	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8627275	8627401	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8627402	8627468	1	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8627402	8627468	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8627469	8627610	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8627611	8627672	1	+	2	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8627611	8627672	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8627673	8627865	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8627866	8628005	1	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8627866	8628005	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8628006	8628104	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8628105	8628231	1	+	1	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8628105	8628231	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8628232	8628401	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8628402	8628510	0.98	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8628402	8628510	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8628511	8628617	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8628618	8628706	0.98	+	2	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8628618	8628706	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8628707	8628908	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8628909	8628992	1	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8628909	8628992	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8628993	8629087	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8629088	8629477	0.92	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8629088	8629477	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8629478	8629605	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8629606	8630304	0.67	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8629606	8630304	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8630305	8630388	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8630389	8630448	1	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8630389	8630448	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	intron	8630449	8630527	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	CDS	8630528	8630575	1	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	exon	8630528	8630575	.	+	.	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
Ledus.S1	AUGUSTUS	stop_codon	8630576	8630578	.	+	0	transcript_id "Ledus.S1G089300.t1"; gene_id "Ledus.S1G089300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3410.t1 is derived from g845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8126322	8128192	.	-	.	Ledus.S1G083100
Ledus.S1	AUGUSTUS	transcript	8126322	8128192	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	stop_codon	8126319	8126321	.	-	0	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	CDS	8126322	8126501	1	-	0	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	exon	8126322	8126501	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	intron	8126502	8126581	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	CDS	8126582	8126644	1	-	0	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	exon	8126582	8126644	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	intron	8126645	8126730	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	CDS	8126731	8126823	1	-	0	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	exon	8126731	8126823	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	intron	8126824	8126896	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	CDS	8126897	8126971	1	-	0	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	exon	8126897	8126971	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	intron	8126972	8127051	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	CDS	8127052	8127152	1	-	2	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	exon	8127052	8127152	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	intron	8127153	8127244	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	CDS	8127245	8127370	1	-	2	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	exon	8127245	8127370	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	intron	8127371	8127460	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	CDS	8127461	8127554	1	-	0	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	exon	8127461	8127554	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	intron	8127555	8127637	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	CDS	8127638	8127703	1	-	0	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	exon	8127638	8127703	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	intron	8127704	8127959	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	CDS	8127960	8128026	1	-	1	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	exon	8127960	8128026	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	intron	8128027	8128181	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	CDS	8128182	8128192	0.92	-	0	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	exon	8128182	8128192	.	-	.	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
Ledus.S1	AUGUSTUS	start_codon	8128190	8128192	.	-	0	transcript_id "Ledus.S1G083100.t1"; gene_id "Ledus.S1G083100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11745.t1 is derived from g5364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6541696	6544428	.	-	.	Ledus.S4G090100
Ledus.S4	AUGUSTUS	transcript	6541696	6544428	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	stop_codon	6541693	6541695	.	-	0	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	CDS	6541696	6541991	1	-	2	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	exon	6541696	6541991	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	intron	6541992	6542086	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	CDS	6542087	6542167	1	-	2	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	exon	6542087	6542167	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	intron	6542168	6542259	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	CDS	6542260	6542614	1	-	0	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	exon	6542260	6542614	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	intron	6542615	6542706	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	CDS	6542707	6542867	1	-	2	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	exon	6542707	6542867	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	intron	6542868	6542953	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	CDS	6542954	6543080	1	-	0	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	exon	6542954	6543080	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	intron	6543081	6543163	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	CDS	6543164	6543328	1	-	0	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	exon	6543164	6543328	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	intron	6543329	6543418	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	CDS	6543419	6543508	1	-	0	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	exon	6543419	6543508	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	intron	6543509	6543616	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	CDS	6543617	6543817	1	-	0	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	exon	6543617	6543817	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	intron	6543818	6543903	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	CDS	6543904	6544116	1	-	0	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	exon	6543904	6544116	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	intron	6544117	6544212	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	CDS	6544213	6544428	0.87	-	0	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	exon	6544213	6544428	.	-	.	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
Ledus.S4	AUGUSTUS	start_codon	6544426	6544428	.	-	0	transcript_id "Ledus.S4G090100.t1"; gene_id "Ledus.S4G090100"
# This transcript jg3601.t1 is derived from g1037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9946322	9946561	.	+	.	Ledus.S1G102200
Ledus.S1	AUGUSTUS	transcript	9946322	9946561	.	+	.	transcript_id "Ledus.S1G102200.t1"; gene_id "Ledus.S1G102200"
Ledus.S1	AUGUSTUS	start_codon	9946322	9946324	.	+	0	transcript_id "Ledus.S1G102200.t1"; gene_id "Ledus.S1G102200"
Ledus.S1	AUGUSTUS	CDS	9946322	9946561	0.58	+	0	transcript_id "Ledus.S1G102200.t1"; gene_id "Ledus.S1G102200"
Ledus.S1	AUGUSTUS	exon	9946322	9946561	.	+	.	transcript_id "Ledus.S1G102200.t1"; gene_id "Ledus.S1G102200"
Ledus.S1	AUGUSTUS	stop_codon	9946562	9946564	.	+	0	transcript_id "Ledus.S1G102200.t1"; gene_id "Ledus.S1G102200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7346.t1 is derived from g12017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1314956	1316512	.	-	.	Ledus.S5G012400
Ledus.S5	AUGUSTUS	transcript	1314956	1316512	.	-	.	transcript_id "Ledus.S5G012400.t1"; gene_id "Ledus.S5G012400"
Ledus.S5	AUGUSTUS	stop_codon	1314953	1314955	.	-	0	transcript_id "Ledus.S5G012400.t1"; gene_id "Ledus.S5G012400"
Ledus.S5	AUGUSTUS	CDS	1314956	1315522	0.99	-	0	transcript_id "Ledus.S5G012400.t1"; gene_id "Ledus.S5G012400"
Ledus.S5	AUGUSTUS	exon	1314956	1315522	.	-	.	transcript_id "Ledus.S5G012400.t1"; gene_id "Ledus.S5G012400"
Ledus.S5	AUGUSTUS	intron	1315523	1315609	.	-	.	transcript_id "Ledus.S5G012400.t1"; gene_id "Ledus.S5G012400"
Ledus.S5	AUGUSTUS	CDS	1315610	1316126	1	-	1	transcript_id "Ledus.S5G012400.t1"; gene_id "Ledus.S5G012400"
Ledus.S5	AUGUSTUS	exon	1315610	1316126	.	-	.	transcript_id "Ledus.S5G012400.t1"; gene_id "Ledus.S5G012400"
Ledus.S5	AUGUSTUS	intron	1316127	1316351	.	-	.	transcript_id "Ledus.S5G012400.t1"; gene_id "Ledus.S5G012400"
Ledus.S5	AUGUSTUS	CDS	1316352	1316512	1	-	0	transcript_id "Ledus.S5G012400.t1"; gene_id "Ledus.S5G012400"
Ledus.S5	AUGUSTUS	exon	1316352	1316512	.	-	.	transcript_id "Ledus.S5G012400.t1"; gene_id "Ledus.S5G012400"
Ledus.S5	AUGUSTUS	start_codon	1316510	1316512	.	-	0	transcript_id "Ledus.S5G012400.t1"; gene_id "Ledus.S5G012400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9186.t1 is derived from g10216.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5285842	5286156	.	+	.	Ledus.S3G066300
Ledus.S3	AUGUSTUS	transcript	5285842	5286156	.	+	.	transcript_id "Ledus.S3G066300.t1"; gene_id "Ledus.S3G066300"
Ledus.S3	AUGUSTUS	start_codon	5285842	5285844	.	+	0	transcript_id "Ledus.S3G066300.t1"; gene_id "Ledus.S3G066300"
Ledus.S3	AUGUSTUS	CDS	5285842	5286156	0.91	+	0	transcript_id "Ledus.S3G066300.t1"; gene_id "Ledus.S3G066300"
Ledus.S3	AUGUSTUS	exon	5285842	5286156	.	+	.	transcript_id "Ledus.S3G066300.t1"; gene_id "Ledus.S3G066300"
Ledus.S3	AUGUSTUS	stop_codon	5286157	5286159	.	+	0	transcript_id "Ledus.S3G066300.t1"; gene_id "Ledus.S3G066300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9722.t1 is derived from g10752.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9416314	9418522	.	+	.	Ledus.S3G119900
Ledus.S3	AUGUSTUS	transcript	9416314	9418522	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	start_codon	9416314	9416316	.	+	0	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	CDS	9416314	9416391	0.85	+	0	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	exon	9416314	9416391	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	intron	9416392	9416483	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	CDS	9416484	9416565	0.98	+	0	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	exon	9416484	9416565	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	intron	9416566	9416667	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	CDS	9416668	9416837	0.98	+	2	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	exon	9416668	9416837	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	intron	9416838	9416936	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	CDS	9416937	9416998	1	+	0	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	exon	9416937	9416998	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	intron	9416999	9417136	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	CDS	9417137	9417281	1	+	1	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	exon	9417137	9417281	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	intron	9417282	9417411	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	CDS	9417412	9417630	1	+	0	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	exon	9417412	9417630	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	intron	9417631	9417771	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	CDS	9417772	9417953	1	+	0	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	exon	9417772	9417953	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	intron	9417954	9418094	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	CDS	9418095	9418270	1	+	1	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	exon	9418095	9418270	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	intron	9418271	9418367	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	CDS	9418368	9418522	0.69	+	2	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	exon	9418368	9418522	.	+	.	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
Ledus.S3	AUGUSTUS	stop_codon	9418523	9418525	.	+	0	transcript_id "Ledus.S3G119900.t1"; gene_id "Ledus.S3G119900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9820.t1 is derived from g10850.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10113239	10114322	.	+	.	Ledus.S3G129700
Ledus.S3	AUGUSTUS	transcript	10113239	10114322	.	+	.	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	start_codon	10113239	10113241	.	+	0	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	CDS	10113239	10113308	1	+	0	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	exon	10113239	10113308	.	+	.	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	intron	10113309	10113403	.	+	.	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	CDS	10113404	10113567	1	+	2	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	exon	10113404	10113567	.	+	.	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	intron	10113568	10113639	.	+	.	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	CDS	10113640	10113750	1	+	0	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	exon	10113640	10113750	.	+	.	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	intron	10113751	10113810	.	+	.	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	CDS	10113811	10113900	1	+	0	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	exon	10113811	10113900	.	+	.	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	intron	10113901	10113988	.	+	.	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	CDS	10113989	10114167	0.99	+	0	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	exon	10113989	10114167	.	+	.	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	intron	10114168	10114276	.	+	.	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	CDS	10114277	10114322	0.99	+	1	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	exon	10114277	10114322	.	+	.	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	stop_codon	10114323	10114325	.	+	0	transcript_id "Ledus.S3G129700.t1"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	transcript	10113239	10114322	.	+	.	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	start_codon	10113239	10113241	.	+	0	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	CDS	10113239	10113308	1	+	0	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	exon	10113239	10113308	.	+	.	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	intron	10113309	10113403	.	+	.	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	CDS	10113404	10113567	1	+	2	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	exon	10113404	10113567	.	+	.	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	intron	10113568	10113639	.	+	.	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	CDS	10113640	10113750	1	+	0	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	exon	10113640	10113750	.	+	.	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	intron	10113751	10113810	.	+	.	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	CDS	10113811	10113900	1	+	0	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	exon	10113811	10113900	.	+	.	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	intron	10113901	10113991	.	+	.	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	CDS	10113992	10114167	0.96	+	0	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	exon	10113992	10114167	.	+	.	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	intron	10114168	10114276	.	+	.	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	CDS	10114277	10114322	0.98	+	1	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	exon	10114277	10114322	.	+	.	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
Ledus.S3	AUGUSTUS	stop_codon	10114323	10114325	.	+	0	transcript_id "Ledus.S3G129700.t2"; gene_id "Ledus.S3G129700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8267.t1 is derived from g12938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10326972	10329729	.	+	.	Ledus.S5G104500
Ledus.S5	AUGUSTUS	transcript	10326972	10329729	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	start_codon	10326972	10326974	.	+	0	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10326972	10327300	0.85	+	0	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10326972	10327300	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	intron	10327301	10327609	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10327610	10327677	1	+	1	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10327610	10327677	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	intron	10327678	10327823	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10327824	10327896	1	+	2	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10327824	10327896	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	intron	10327897	10328100	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10328101	10328119	1	+	1	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10328101	10328119	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	intron	10328120	10328280	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10328281	10328400	1	+	0	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10328281	10328400	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	intron	10328401	10328538	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10328539	10328608	1	+	0	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10328539	10328608	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	intron	10328609	10328753	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10328754	10328797	0.96	+	2	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10328754	10328797	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	intron	10328798	10328899	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10328900	10328941	0.99	+	0	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10328900	10328941	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	intron	10328942	10329032	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10329033	10329092	1	+	0	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10329033	10329092	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	intron	10329093	10329204	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10329205	10329272	1	+	0	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10329205	10329272	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	intron	10329273	10329362	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10329363	10329420	1	+	1	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10329363	10329420	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	intron	10329421	10329546	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10329547	10329643	1	+	0	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10329547	10329643	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	intron	10329644	10329727	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	CDS	10329728	10329729	1	+	2	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	exon	10329728	10329729	.	+	.	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
Ledus.S5	AUGUSTUS	stop_codon	10329730	10329732	.	+	0	transcript_id "Ledus.S5G104500.t1"; gene_id "Ledus.S5G104500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9504.t1 is derived from g10534.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7497840	7498956	.	+	.	Ledus.S3G098100
Ledus.S3	AUGUSTUS	transcript	7497840	7498956	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	start_codon	7497840	7497842	.	+	0	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	CDS	7497840	7497842	0.88	+	0	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	exon	7497840	7497842	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	intron	7497843	7497977	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	CDS	7497978	7498047	1	+	0	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	exon	7497978	7498047	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	intron	7498048	7498115	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	CDS	7498116	7498192	1	+	2	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	exon	7498116	7498192	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	intron	7498193	7498275	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	CDS	7498276	7498404	1	+	0	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	exon	7498276	7498404	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	intron	7498405	7498480	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	CDS	7498481	7498609	0.49	+	0	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	exon	7498481	7498609	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	intron	7498610	7498704	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	CDS	7498705	7498715	0.67	+	0	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	exon	7498705	7498715	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	intron	7498716	7498889	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	CDS	7498890	7498956	0.67	+	1	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	exon	7498890	7498956	.	+	.	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
Ledus.S3	AUGUSTUS	stop_codon	7498957	7498959	.	+	0	transcript_id "Ledus.S3G098100.t1"; gene_id "Ledus.S3G098100"
# This transcript jg10038.t2 is derived from g11068.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10038.t3 is derived from g11068.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10039.t1 is derived from g11069.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12127935	12136065	.	-	.	Ledus.S3G151600
Ledus.S3	AUGUSTUS	transcript	12127935	12136065	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	stop_codon	12127932	12127934	.	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12127935	12128071	0.98	-	2	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12127935	12128071	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12128072	12128169	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12128170	12128217	0.6	-	2	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12128170	12128217	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12128218	12128383	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12128384	12128506	0.53	-	2	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12128384	12128506	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12128507	12128769	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12128770	12128798	0.48	-	1	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12128770	12128798	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12128799	12128928	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12128929	12129002	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12128929	12129002	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12129003	12129099	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12129100	12129465	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12129100	12129465	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12129466	12129554	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12129555	12129786	0.93	-	1	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12129555	12129786	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12129787	12129895	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12129896	12129987	0.99	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12129896	12129987	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12129988	12130133	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12130134	12130367	0.99	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12130134	12130367	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12130368	12130478	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12130479	12130727	0.98	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12130479	12130727	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12130728	12130891	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12130892	12130946	1	-	1	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12130892	12130946	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12130947	12131138	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12131139	12131389	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12131139	12131389	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12131390	12131483	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12131484	12131597	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12131484	12131597	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12131598	12131685	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12131686	12131892	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12131686	12131892	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12131893	12131975	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12131976	12132161	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12131976	12132161	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12132162	12132338	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12132339	12132467	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12132339	12132467	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12132468	12132591	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12132592	12132669	0.86	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12132592	12132669	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12132670	12132775	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12132776	12132871	0.98	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12132776	12132871	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12132872	12133019	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12133020	12133091	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12133020	12133091	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12133092	12133291	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12133292	12133420	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12133292	12133420	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12133421	12133536	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12133537	12133652	0.99	-	2	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12133537	12133652	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12133653	12133847	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12133848	12134007	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12133848	12134007	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12134008	12134147	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12134148	12134231	0.99	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12134148	12134231	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12134232	12134340	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12134341	12134402	1	-	2	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12134341	12134402	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12134403	12134570	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12134571	12134758	1	-	1	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12134571	12134758	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12134759	12134930	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12134931	12134995	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12134931	12134995	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12134996	12135251	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12135252	12135308	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12135252	12135308	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12135309	12135403	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12135404	12135490	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12135404	12135490	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12135491	12135650	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12135651	12135716	1	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12135651	12135716	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12135717	12135966	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12135967	12136065	0.85	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12135967	12136065	.	-	.	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	start_codon	12136063	12136065	.	-	0	transcript_id "Ledus.S3G151600.t1"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	transcript	12127935	12136065	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	stop_codon	12127932	12127934	.	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12127935	12128071	0.96	-	2	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12127935	12128071	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12128072	12128169	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12128170	12128217	0.51	-	2	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12128170	12128217	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12128218	12128383	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12128384	12128506	0.61	-	2	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12128384	12128506	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12128507	12128769	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12128770	12128798	0.59	-	1	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12128770	12128798	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12128799	12128928	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12128929	12129002	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12128929	12129002	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12129003	12129099	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12129100	12129465	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12129100	12129465	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12129466	12129554	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12129555	12129786	0.9	-	1	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12129555	12129786	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12129787	12129895	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12129896	12129987	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12129896	12129987	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12129988	12130133	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12130134	12130367	0.99	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12130134	12130367	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12130368	12130478	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12130479	12130727	0.99	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12130479	12130727	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12130728	12130891	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12130892	12130946	1	-	1	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12130892	12130946	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12130947	12131138	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12131139	12131389	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12131139	12131389	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12131390	12131483	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12131484	12131597	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12131484	12131597	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12131598	12131685	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12131686	12131892	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12131686	12131892	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12131893	12131975	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12131976	12132161	0.99	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12131976	12132161	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12132162	12132338	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12132339	12132467	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12132339	12132467	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12132468	12132591	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12132592	12132669	0.85	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12132592	12132669	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12132670	12132775	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12132776	12132871	0.96	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12132776	12132871	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12132872	12133019	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12133020	12133091	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12133020	12133091	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12133092	12133291	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12133292	12133420	0.99	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12133292	12133420	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12133421	12133536	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12133537	12133652	0.98	-	2	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12133537	12133652	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12133653	12133847	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12133848	12134007	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12133848	12134007	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12134008	12134147	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12134148	12134231	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12134148	12134231	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12134232	12134340	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12134341	12134402	1	-	2	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12134341	12134402	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12134403	12134570	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12134571	12134755	1	-	1	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12134571	12134755	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12134756	12134930	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12134931	12134995	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12134931	12134995	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12134996	12135251	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12135252	12135308	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12135252	12135308	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12135309	12135403	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12135404	12135490	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12135404	12135490	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12135491	12135650	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12135651	12135716	1	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12135651	12135716	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	intron	12135717	12135966	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	CDS	12135967	12136065	0.87	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	exon	12135967	12136065	.	-	.	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
Ledus.S3	AUGUSTUS	start_codon	12136063	12136065	.	-	0	transcript_id "Ledus.S3G151600.t2"; gene_id "Ledus.S3G151600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12919.t1 is derived from g4411.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	334298	338967	.	-	.	Ledus.C9G002700
Ledus.C9	AUGUSTUS	transcript	334298	338967	.	-	.	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	stop_codon	334295	334297	.	-	0	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	CDS	334298	338090	0.98	-	1	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	exon	334298	338090	.	-	.	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	intron	338091	338200	.	-	.	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	CDS	338201	338364	0.61	-	0	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	exon	338201	338364	.	-	.	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	intron	338365	338496	.	-	.	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	CDS	338497	338695	0.71	-	1	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	exon	338497	338695	.	-	.	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	intron	338696	338941	.	-	.	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	CDS	338942	338967	1	-	0	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	exon	338942	338967	.	-	.	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
Ledus.C9	AUGUSTUS	start_codon	338965	338967	.	-	0	transcript_id "Ledus.C9G002700.t1"; gene_id "Ledus.C9G002700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7973.t1 is derived from g12644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8292623	8293987	.	+	.	Ledus.S5G075100
Ledus.S5	AUGUSTUS	transcript	8292623	8293987	.	+	.	transcript_id "Ledus.S5G075100.t1"; gene_id "Ledus.S5G075100"
Ledus.S5	AUGUSTUS	start_codon	8292623	8292625	.	+	0	transcript_id "Ledus.S5G075100.t1"; gene_id "Ledus.S5G075100"
Ledus.S5	AUGUSTUS	CDS	8292623	8292701	0.61	+	0	transcript_id "Ledus.S5G075100.t1"; gene_id "Ledus.S5G075100"
Ledus.S5	AUGUSTUS	exon	8292623	8292701	.	+	.	transcript_id "Ledus.S5G075100.t1"; gene_id "Ledus.S5G075100"
Ledus.S5	AUGUSTUS	intron	8292702	8292831	.	+	.	transcript_id "Ledus.S5G075100.t1"; gene_id "Ledus.S5G075100"
Ledus.S5	AUGUSTUS	CDS	8292832	8292837	0.28	+	2	transcript_id "Ledus.S5G075100.t1"; gene_id "Ledus.S5G075100"
Ledus.S5	AUGUSTUS	exon	8292832	8292837	.	+	.	transcript_id "Ledus.S5G075100.t1"; gene_id "Ledus.S5G075100"
Ledus.S5	AUGUSTUS	intron	8292838	8292920	.	+	.	transcript_id "Ledus.S5G075100.t1"; gene_id "Ledus.S5G075100"
Ledus.S5	AUGUSTUS	CDS	8292921	8293987	0.29	+	2	transcript_id "Ledus.S5G075100.t1"; gene_id "Ledus.S5G075100"
Ledus.S5	AUGUSTUS	exon	8292921	8293987	.	+	.	transcript_id "Ledus.S5G075100.t1"; gene_id "Ledus.S5G075100"
Ledus.S5	AUGUSTUS	stop_codon	8293988	8293990	.	+	0	transcript_id "Ledus.S5G075100.t1"; gene_id "Ledus.S5G075100"
# This transcript jg10943.t2 is derived from g4561.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10944.t1 is derived from g4562.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	750405	754014	.	+	.	Ledus.S4G010000
Ledus.S4	AUGUSTUS	transcript	750405	754014	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	start_codon	750405	750407	.	+	0	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	CDS	750405	750469	0.42	+	0	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	exon	750405	750469	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	intron	750470	750635	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	CDS	750636	750757	0.56	+	1	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	exon	750636	750757	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	intron	750758	750848	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	CDS	750849	751111	0.49	+	2	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	exon	750849	751111	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	intron	751112	751201	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	CDS	751202	751607	0.93	+	0	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	exon	751202	751607	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	intron	751608	751758	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	CDS	751759	751953	1	+	2	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	exon	751759	751953	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	intron	751954	752160	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	CDS	752161	752609	1	+	2	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	exon	752161	752609	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	intron	752610	752706	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	CDS	752707	752811	1	+	0	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	exon	752707	752811	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	intron	752812	752936	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	CDS	752937	753215	0.99	+	0	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	exon	752937	753215	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	intron	753216	753326	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	CDS	753327	753539	0.99	+	0	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	exon	753327	753539	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	intron	753540	753622	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	CDS	753623	753855	1	+	0	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	exon	753623	753855	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	intron	753856	753935	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	CDS	753936	754014	1	+	1	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	exon	753936	754014	.	+	.	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
Ledus.S4	AUGUSTUS	stop_codon	754015	754017	.	+	0	transcript_id "Ledus.S4G010000.t1"; gene_id "Ledus.S4G010000"
# This transcript jg2585.t2 is derived from g18.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2586.t1 is derived from g19.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	167917	168237	.	+	.	Ledus.S1G000700
Ledus.S1	AUGUSTUS	transcript	167917	168237	.	+	.	transcript_id "Ledus.S1G000700.t1"; gene_id "Ledus.S1G000700"
Ledus.S1	AUGUSTUS	start_codon	167917	167919	.	+	0	transcript_id "Ledus.S1G000700.t1"; gene_id "Ledus.S1G000700"
Ledus.S1	AUGUSTUS	CDS	167917	168237	0.77	+	0	transcript_id "Ledus.S1G000700.t1"; gene_id "Ledus.S1G000700"
Ledus.S1	AUGUSTUS	exon	167917	168237	.	+	.	transcript_id "Ledus.S1G000700.t1"; gene_id "Ledus.S1G000700"
Ledus.S1	AUGUSTUS	stop_codon	168238	168240	.	+	0	transcript_id "Ledus.S1G000700.t1"; gene_id "Ledus.S1G000700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4358.t1 is derived from g1794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16563279	16563899	.	-	.	Ledus.S1G177900
Ledus.S1	AUGUSTUS	transcript	16563279	16563899	.	-	.	transcript_id "Ledus.S1G177900.t1"; gene_id "Ledus.S1G177900"
Ledus.S1	AUGUSTUS	stop_codon	16563276	16563278	.	-	0	transcript_id "Ledus.S1G177900.t1"; gene_id "Ledus.S1G177900"
Ledus.S1	AUGUSTUS	CDS	16563279	16563899	0.97	-	0	transcript_id "Ledus.S1G177900.t1"; gene_id "Ledus.S1G177900"
Ledus.S1	AUGUSTUS	exon	16563279	16563899	.	-	.	transcript_id "Ledus.S1G177900.t1"; gene_id "Ledus.S1G177900"
Ledus.S1	AUGUSTUS	start_codon	16563897	16563899	.	-	0	transcript_id "Ledus.S1G177900.t1"; gene_id "Ledus.S1G177900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5333.t1 is derived from g2772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23412787	23414827	.	+	.	Ledus.S1G275400
Ledus.S1	AUGUSTUS	transcript	23412787	23414827	.	+	.	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	start_codon	23412787	23412789	.	+	0	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	CDS	23412787	23413440	0.66	+	0	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	exon	23412787	23413440	.	+	.	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	intron	23413441	23413547	.	+	.	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	CDS	23413548	23413693	0.9	+	0	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	exon	23413548	23413693	.	+	.	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	intron	23413694	23413786	.	+	.	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	CDS	23413787	23413964	1	+	1	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	exon	23413787	23413964	.	+	.	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	intron	23413965	23414070	.	+	.	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	CDS	23414071	23414205	1	+	0	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	exon	23414071	23414205	.	+	.	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	intron	23414206	23414348	.	+	.	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	CDS	23414349	23414533	1	+	0	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	exon	23414349	23414533	.	+	.	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	intron	23414534	23414646	.	+	.	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	CDS	23414647	23414827	0.94	+	1	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	exon	23414647	23414827	.	+	.	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
Ledus.S1	AUGUSTUS	stop_codon	23414828	23414830	.	+	0	transcript_id "Ledus.S1G275400.t1"; gene_id "Ledus.S1G275400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4342.t1 is derived from g1778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16475409	16476158	.	-	.	Ledus.S1G176300
Ledus.S1	AUGUSTUS	transcript	16475409	16476158	.	-	.	transcript_id "Ledus.S1G176300.t1"; gene_id "Ledus.S1G176300"
Ledus.S1	AUGUSTUS	stop_codon	16475406	16475408	.	-	0	transcript_id "Ledus.S1G176300.t1"; gene_id "Ledus.S1G176300"
Ledus.S1	AUGUSTUS	CDS	16475409	16475590	0.65	-	2	transcript_id "Ledus.S1G176300.t1"; gene_id "Ledus.S1G176300"
Ledus.S1	AUGUSTUS	exon	16475409	16475590	.	-	.	transcript_id "Ledus.S1G176300.t1"; gene_id "Ledus.S1G176300"
Ledus.S1	AUGUSTUS	intron	16475591	16476043	.	-	.	transcript_id "Ledus.S1G176300.t1"; gene_id "Ledus.S1G176300"
Ledus.S1	AUGUSTUS	CDS	16476044	16476158	0.33	-	0	transcript_id "Ledus.S1G176300.t1"; gene_id "Ledus.S1G176300"
Ledus.S1	AUGUSTUS	exon	16476044	16476158	.	-	.	transcript_id "Ledus.S1G176300.t1"; gene_id "Ledus.S1G176300"
Ledus.S1	AUGUSTUS	start_codon	16476156	16476158	.	-	0	transcript_id "Ledus.S1G176300.t1"; gene_id "Ledus.S1G176300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5024.t1 is derived from g2463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21195811	21197587	.	-	.	Ledus.S1G244500
Ledus.S1	AUGUSTUS	transcript	21195811	21197587	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	stop_codon	21195808	21195810	.	-	0	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	CDS	21195811	21195892	0.86	-	1	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	exon	21195811	21195892	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	intron	21195893	21196106	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	CDS	21196107	21196147	0.62	-	0	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	exon	21196107	21196147	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	intron	21196148	21196408	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	CDS	21196409	21196537	0.43	-	0	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	exon	21196409	21196537	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	intron	21196538	21196781	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	CDS	21196782	21196808	0.61	-	0	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	exon	21196782	21196808	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	intron	21196809	21196887	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	CDS	21196888	21196994	1	-	2	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	exon	21196888	21196994	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	intron	21196995	21197079	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	CDS	21197080	21197143	1	-	0	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	exon	21197080	21197143	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	intron	21197144	21197222	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	CDS	21197223	21197340	1	-	1	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	exon	21197223	21197340	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	intron	21197341	21197435	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	CDS	21197436	21197587	0.98	-	0	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	exon	21197436	21197587	.	-	.	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
Ledus.S1	AUGUSTUS	start_codon	21197585	21197587	.	-	0	transcript_id "Ledus.S1G244500.t1"; gene_id "Ledus.S1G244500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10520.t1 is derived from g11550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15812753	15813442	.	+	.	Ledus.S3G199700
Ledus.S3	AUGUSTUS	transcript	15812753	15813442	.	+	.	transcript_id "Ledus.S3G199700.t1"; gene_id "Ledus.S3G199700"
Ledus.S3	AUGUSTUS	start_codon	15812753	15812755	.	+	0	transcript_id "Ledus.S3G199700.t1"; gene_id "Ledus.S3G199700"
Ledus.S3	AUGUSTUS	CDS	15812753	15812825	0.9	+	0	transcript_id "Ledus.S3G199700.t1"; gene_id "Ledus.S3G199700"
Ledus.S3	AUGUSTUS	exon	15812753	15812825	.	+	.	transcript_id "Ledus.S3G199700.t1"; gene_id "Ledus.S3G199700"
Ledus.S3	AUGUSTUS	intron	15812826	15812893	.	+	.	transcript_id "Ledus.S3G199700.t1"; gene_id "Ledus.S3G199700"
Ledus.S3	AUGUSTUS	CDS	15812894	15813055	0.55	+	2	transcript_id "Ledus.S3G199700.t1"; gene_id "Ledus.S3G199700"
Ledus.S3	AUGUSTUS	exon	15812894	15813055	.	+	.	transcript_id "Ledus.S3G199700.t1"; gene_id "Ledus.S3G199700"
Ledus.S3	AUGUSTUS	intron	15813056	15813179	.	+	.	transcript_id "Ledus.S3G199700.t1"; gene_id "Ledus.S3G199700"
Ledus.S3	AUGUSTUS	CDS	15813180	15813442	0.8	+	2	transcript_id "Ledus.S3G199700.t1"; gene_id "Ledus.S3G199700"
Ledus.S3	AUGUSTUS	exon	15813180	15813442	.	+	.	transcript_id "Ledus.S3G199700.t1"; gene_id "Ledus.S3G199700"
Ledus.S3	AUGUSTUS	stop_codon	15813443	15813445	.	+	0	transcript_id "Ledus.S3G199700.t1"; gene_id "Ledus.S3G199700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12396.t1 is derived from g6017.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11653387	11654206	.	+	.	Ledus.S4G155200
Ledus.S4	AUGUSTUS	transcript	11653387	11654206	.	+	.	transcript_id "Ledus.S4G155200.t1"; gene_id "Ledus.S4G155200"
Ledus.S4	AUGUSTUS	start_codon	11653387	11653389	.	+	0	transcript_id "Ledus.S4G155200.t1"; gene_id "Ledus.S4G155200"
Ledus.S4	AUGUSTUS	CDS	11653387	11653394	0.2	+	0	transcript_id "Ledus.S4G155200.t1"; gene_id "Ledus.S4G155200"
Ledus.S4	AUGUSTUS	exon	11653387	11653394	.	+	.	transcript_id "Ledus.S4G155200.t1"; gene_id "Ledus.S4G155200"
Ledus.S4	AUGUSTUS	intron	11653395	11653758	.	+	.	transcript_id "Ledus.S4G155200.t1"; gene_id "Ledus.S4G155200"
Ledus.S4	AUGUSTUS	CDS	11653759	11654206	0.48	+	1	transcript_id "Ledus.S4G155200.t1"; gene_id "Ledus.S4G155200"
Ledus.S4	AUGUSTUS	exon	11653759	11654206	.	+	.	transcript_id "Ledus.S4G155200.t1"; gene_id "Ledus.S4G155200"
Ledus.S4	AUGUSTUS	stop_codon	11654207	11654209	.	+	0	transcript_id "Ledus.S4G155200.t1"; gene_id "Ledus.S4G155200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg541.t1 is derived from g7402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3135865	3137622	.	-	.	Ledus.S2G042300
Ledus.S2	AUGUSTUS	transcript	3135865	3137622	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	stop_codon	3135862	3135864	.	-	0	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	CDS	3135865	3135990	1	-	0	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	exon	3135865	3135990	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	intron	3135991	3136087	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	CDS	3136088	3136186	1	-	0	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	exon	3136088	3136186	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	intron	3136187	3136275	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	CDS	3136276	3136515	1	-	0	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	exon	3136276	3136515	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	intron	3136516	3136627	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	CDS	3136628	3136723	1	-	0	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	exon	3136628	3136723	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	intron	3136724	3136801	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	CDS	3136802	3136903	1	-	0	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	exon	3136802	3136903	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	intron	3136904	3137051	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	CDS	3137052	3137153	1	-	0	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	exon	3137052	3137153	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	intron	3137154	3137266	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	CDS	3137267	3137356	1	-	0	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	exon	3137267	3137356	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	intron	3137357	3137535	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	CDS	3137536	3137622	1	-	0	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	exon	3137536	3137622	.	-	.	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
Ledus.S2	AUGUSTUS	start_codon	3137620	3137622	.	-	0	transcript_id "Ledus.S2G042300.t1"; gene_id "Ledus.S2G042300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1380.t1 is derived from g8241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9701268	9701756	.	+	.	Ledus.S2G126200
Ledus.S2	AUGUSTUS	transcript	9701268	9701756	.	+	.	transcript_id "Ledus.S2G126200.t1"; gene_id "Ledus.S2G126200"
Ledus.S2	AUGUSTUS	start_codon	9701268	9701270	.	+	0	transcript_id "Ledus.S2G126200.t1"; gene_id "Ledus.S2G126200"
Ledus.S2	AUGUSTUS	CDS	9701268	9701756	0.11	+	0	transcript_id "Ledus.S2G126200.t1"; gene_id "Ledus.S2G126200"
Ledus.S2	AUGUSTUS	exon	9701268	9701756	.	+	.	transcript_id "Ledus.S2G126200.t1"; gene_id "Ledus.S2G126200"
Ledus.S2	AUGUSTUS	stop_codon	9701757	9701759	.	+	0	transcript_id "Ledus.S2G126200.t1"; gene_id "Ledus.S2G126200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6570.t1 is derived from g4013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32447319	32448870	.	+	.	Ledus.S1G399100
Ledus.S1	AUGUSTUS	transcript	32447319	32448870	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	start_codon	32447319	32447321	.	+	0	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	CDS	32447319	32447427	0.98	+	0	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	exon	32447319	32447427	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	intron	32447428	32447512	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	CDS	32447513	32447626	1	+	2	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	exon	32447513	32447626	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	intron	32447627	32447737	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	CDS	32447738	32447859	0.93	+	2	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	exon	32447738	32447859	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	intron	32447860	32447964	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	CDS	32447965	32448037	0.99	+	0	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	exon	32447965	32448037	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	intron	32448038	32448196	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	CDS	32448197	32448264	1	+	2	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	exon	32448197	32448264	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	intron	32448265	32448360	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	CDS	32448361	32448490	1	+	0	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	exon	32448361	32448490	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	intron	32448491	32448629	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	CDS	32448630	32448718	0.99	+	2	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	exon	32448630	32448718	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	intron	32448719	32448846	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	CDS	32448847	32448870	0.99	+	0	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	exon	32448847	32448870	.	+	.	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
Ledus.S1	AUGUSTUS	stop_codon	32448871	32448873	.	+	0	transcript_id "Ledus.S1G399100.t1"; gene_id "Ledus.S1G399100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7872.t1 is derived from g12543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7556864	7559305	.	+	.	Ledus.S5G065000
Ledus.S5	AUGUSTUS	transcript	7556864	7559305	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	start_codon	7556864	7556866	.	+	0	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	CDS	7556864	7556947	0.81	+	0	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	exon	7556864	7556947	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	intron	7556948	7557485	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	CDS	7557486	7557557	0.94	+	0	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	exon	7557486	7557557	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	intron	7557558	7557726	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	CDS	7557727	7557852	1	+	0	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	exon	7557727	7557852	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	intron	7557853	7557985	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	CDS	7557986	7558084	1	+	0	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	exon	7557986	7558084	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	intron	7558085	7558204	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	CDS	7558205	7558277	1	+	0	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	exon	7558205	7558277	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	intron	7558278	7558459	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	CDS	7558460	7558545	1	+	2	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	exon	7558460	7558545	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	intron	7558546	7558669	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	CDS	7558670	7558756	1	+	0	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	exon	7558670	7558756	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	intron	7558757	7558954	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	CDS	7558955	7559014	1	+	0	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	exon	7558955	7559014	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	intron	7559015	7559119	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	CDS	7559120	7559305	0.98	+	0	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	exon	7559120	7559305	.	+	.	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
Ledus.S5	AUGUSTUS	stop_codon	7559306	7559308	.	+	0	transcript_id "Ledus.S5G065000.t1"; gene_id "Ledus.S5G065000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4497.t1 is derived from g1933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17369401	17370048	.	-	.	Ledus.S1G191800
Ledus.S1	AUGUSTUS	transcript	17369401	17370048	.	-	.	transcript_id "Ledus.S1G191800.t1"; gene_id "Ledus.S1G191800"
Ledus.S1	AUGUSTUS	stop_codon	17369398	17369400	.	-	0	transcript_id "Ledus.S1G191800.t1"; gene_id "Ledus.S1G191800"
Ledus.S1	AUGUSTUS	CDS	17369401	17370048	0.7	-	0	transcript_id "Ledus.S1G191800.t1"; gene_id "Ledus.S1G191800"
Ledus.S1	AUGUSTUS	exon	17369401	17370048	.	-	.	transcript_id "Ledus.S1G191800.t1"; gene_id "Ledus.S1G191800"
Ledus.S1	AUGUSTUS	start_codon	17370046	17370048	.	-	0	transcript_id "Ledus.S1G191800.t1"; gene_id "Ledus.S1G191800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5866.t1 is derived from g3308.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27441782	27443367	.	-	.	Ledus.S1G328700
Ledus.S1	AUGUSTUS	transcript	27441782	27443367	.	-	.	transcript_id "Ledus.S1G328700.t1"; gene_id "Ledus.S1G328700"
Ledus.S1	AUGUSTUS	stop_codon	27441779	27441781	.	-	0	transcript_id "Ledus.S1G328700.t1"; gene_id "Ledus.S1G328700"
Ledus.S1	AUGUSTUS	CDS	27441782	27442106	0.89	-	1	transcript_id "Ledus.S1G328700.t1"; gene_id "Ledus.S1G328700"
Ledus.S1	AUGUSTUS	exon	27441782	27442106	.	-	.	transcript_id "Ledus.S1G328700.t1"; gene_id "Ledus.S1G328700"
Ledus.S1	AUGUSTUS	intron	27442107	27442198	.	-	.	transcript_id "Ledus.S1G328700.t1"; gene_id "Ledus.S1G328700"
Ledus.S1	AUGUSTUS	CDS	27442199	27443367	0.39	-	0	transcript_id "Ledus.S1G328700.t1"; gene_id "Ledus.S1G328700"
Ledus.S1	AUGUSTUS	exon	27442199	27443367	.	-	.	transcript_id "Ledus.S1G328700.t1"; gene_id "Ledus.S1G328700"
Ledus.S1	AUGUSTUS	start_codon	27443365	27443367	.	-	0	transcript_id "Ledus.S1G328700.t1"; gene_id "Ledus.S1G328700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5273.t1 is derived from g2712.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22814937	22817961	.	+	.	Ledus.S1G269400
Ledus.S1	AUGUSTUS	transcript	22814937	22817961	.	+	.	transcript_id "Ledus.S1G269400.t1"; gene_id "Ledus.S1G269400"
Ledus.S1	AUGUSTUS	start_codon	22814937	22814939	.	+	0	transcript_id "Ledus.S1G269400.t1"; gene_id "Ledus.S1G269400"
Ledus.S1	AUGUSTUS	CDS	22814937	22815090	1	+	0	transcript_id "Ledus.S1G269400.t1"; gene_id "Ledus.S1G269400"
Ledus.S1	AUGUSTUS	exon	22814937	22815090	.	+	.	transcript_id "Ledus.S1G269400.t1"; gene_id "Ledus.S1G269400"
Ledus.S1	AUGUSTUS	intron	22815091	22815184	.	+	.	transcript_id "Ledus.S1G269400.t1"; gene_id "Ledus.S1G269400"
Ledus.S1	AUGUSTUS	CDS	22815185	22815231	1	+	2	transcript_id "Ledus.S1G269400.t1"; gene_id "Ledus.S1G269400"
Ledus.S1	AUGUSTUS	exon	22815185	22815231	.	+	.	transcript_id "Ledus.S1G269400.t1"; gene_id "Ledus.S1G269400"
Ledus.S1	AUGUSTUS	intron	22815232	22815312	.	+	.	transcript_id "Ledus.S1G269400.t1"; gene_id "Ledus.S1G269400"
Ledus.S1	AUGUSTUS	CDS	22815313	22817961	1	+	0	transcript_id "Ledus.S1G269400.t1"; gene_id "Ledus.S1G269400"
Ledus.S1	AUGUSTUS	exon	22815313	22817961	.	+	.	transcript_id "Ledus.S1G269400.t1"; gene_id "Ledus.S1G269400"
Ledus.S1	AUGUSTUS	stop_codon	22817962	22817964	.	+	0	transcript_id "Ledus.S1G269400.t1"; gene_id "Ledus.S1G269400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4311.t1 is derived from g1747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16148779	16150661	.	+	.	Ledus.S1G173200
Ledus.S1	AUGUSTUS	transcript	16148779	16150661	.	+	.	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	start_codon	16148779	16148781	.	+	0	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	CDS	16148779	16149555	0.98	+	0	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	exon	16148779	16149555	.	+	.	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	intron	16149556	16149641	.	+	.	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	CDS	16149642	16149872	1	+	0	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	exon	16149642	16149872	.	+	.	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	intron	16149873	16149950	.	+	.	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	CDS	16149951	16150260	1	+	0	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	exon	16149951	16150260	.	+	.	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	intron	16150261	16150359	.	+	.	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	CDS	16150360	16150661	1	+	2	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	exon	16150360	16150661	.	+	.	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
Ledus.S1	AUGUSTUS	stop_codon	16150662	16150664	.	+	0	transcript_id "Ledus.S1G173200.t1"; gene_id "Ledus.S1G173200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11577.t1 is derived from g5195.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5363575	5363871	.	-	.	Ledus.S4G073300
Ledus.S4	AUGUSTUS	transcript	5363575	5363871	.	-	.	transcript_id "Ledus.S4G073300.t1"; gene_id "Ledus.S4G073300"
Ledus.S4	AUGUSTUS	stop_codon	5363572	5363574	.	-	0	transcript_id "Ledus.S4G073300.t1"; gene_id "Ledus.S4G073300"
Ledus.S4	AUGUSTUS	CDS	5363575	5363871	0.52	-	0	transcript_id "Ledus.S4G073300.t1"; gene_id "Ledus.S4G073300"
Ledus.S4	AUGUSTUS	exon	5363575	5363871	.	-	.	transcript_id "Ledus.S4G073300.t1"; gene_id "Ledus.S4G073300"
Ledus.S4	AUGUSTUS	start_codon	5363869	5363871	.	-	0	transcript_id "Ledus.S4G073300.t1"; gene_id "Ledus.S4G073300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1186.t1 is derived from g8047.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8386370	8388822	.	+	.	Ledus.S2G106800
Ledus.S2	AUGUSTUS	transcript	8386370	8388822	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	start_codon	8386370	8386372	.	+	0	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	CDS	8386370	8386484	0.26	+	0	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	exon	8386370	8386484	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	intron	8386485	8386587	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	CDS	8386588	8386627	0.33	+	2	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	exon	8386588	8386627	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	intron	8386628	8386695	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	CDS	8386696	8386734	0.67	+	1	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	exon	8386696	8386734	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	intron	8386735	8386886	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	CDS	8386887	8387154	0.68	+	1	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	exon	8386887	8387154	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	intron	8387155	8387245	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	CDS	8387246	8387951	1	+	0	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	exon	8387246	8387951	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	intron	8387952	8388031	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	CDS	8388032	8388428	1	+	2	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	exon	8388032	8388428	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	intron	8388429	8388518	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	CDS	8388519	8388822	0.99	+	1	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	exon	8388519	8388822	.	+	.	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
Ledus.S2	AUGUSTUS	stop_codon	8388823	8388825	.	+	0	transcript_id "Ledus.S2G106800.t1"; gene_id "Ledus.S2G106800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2103.t1 is derived from g8966.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14730503	14734505	.	+	.	Ledus.S2G198500
Ledus.S2	AUGUSTUS	transcript	14730503	14734505	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	start_codon	14730503	14730505	.	+	0	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14730503	14731757	0.45	+	0	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14730503	14731757	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14731758	14732140	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14732141	14732279	0.42	+	2	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14732141	14732279	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14732280	14732569	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14732570	14733164	1	+	1	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14732570	14733164	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14733165	14733243	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14733244	14733566	0.99	+	0	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14733244	14733566	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14733567	14733664	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14733665	14733868	1	+	1	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14733665	14733868	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14733869	14733996	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14733997	14734078	1	+	1	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14733997	14734078	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14734079	14734174	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14734175	14734273	1	+	0	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14734175	14734273	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14734274	14734364	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14734365	14734505	1	+	0	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14734365	14734505	.	+	.	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	stop_codon	14734506	14734508	.	+	0	transcript_id "Ledus.S2G198500.t1"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	transcript	14732488	14734505	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	start_codon	14732488	14732490	.	+	0	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14732488	14732492	0.21	+	0	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14732488	14732492	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14732493	14732569	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14732570	14733164	0.38	+	1	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14732570	14733164	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14733165	14733243	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14733244	14733566	1	+	0	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14733244	14733566	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14733567	14733664	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14733665	14733868	1	+	1	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14733665	14733868	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14733869	14733996	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14733997	14734078	1	+	1	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14733997	14734078	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14734079	14734174	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14734175	14734273	1	+	0	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14734175	14734273	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	intron	14734274	14734364	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	CDS	14734365	14734505	0.99	+	0	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	exon	14734365	14734505	.	+	.	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
Ledus.S2	AUGUSTUS	stop_codon	14734506	14734508	.	+	0	transcript_id "Ledus.S2G198500.t2"; gene_id "Ledus.S2G198500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11145.t1 is derived from g4763.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2145695	2146234	.	+	.	Ledus.S4G030100
Ledus.S4	AUGUSTUS	transcript	2145695	2146234	.	+	.	transcript_id "Ledus.S4G030100.t1"; gene_id "Ledus.S4G030100"
Ledus.S4	AUGUSTUS	start_codon	2145695	2145697	.	+	0	transcript_id "Ledus.S4G030100.t1"; gene_id "Ledus.S4G030100"
Ledus.S4	AUGUSTUS	CDS	2145695	2146234	1	+	0	transcript_id "Ledus.S4G030100.t1"; gene_id "Ledus.S4G030100"
Ledus.S4	AUGUSTUS	exon	2145695	2146234	.	+	.	transcript_id "Ledus.S4G030100.t1"; gene_id "Ledus.S4G030100"
Ledus.S4	AUGUSTUS	stop_codon	2146235	2146237	.	+	0	transcript_id "Ledus.S4G030100.t1"; gene_id "Ledus.S4G030100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2383.t1 is derived from g9246.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17832764	17834008	.	-	.	Ledus.S2G226500
Ledus.S2	AUGUSTUS	transcript	17832764	17834008	.	-	.	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	stop_codon	17832761	17832763	.	-	0	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	CDS	17832764	17832876	0.74	-	2	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	exon	17832764	17832876	.	-	.	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	intron	17832877	17832972	.	-	.	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	CDS	17832973	17833058	1	-	1	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	exon	17832973	17833058	.	-	.	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	intron	17833059	17833159	.	-	.	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	CDS	17833160	17833298	0.98	-	2	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	exon	17833160	17833298	.	-	.	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	intron	17833299	17833445	.	-	.	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	CDS	17833446	17833590	1	-	0	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	exon	17833446	17833590	.	-	.	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	intron	17833591	17833732	.	-	.	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	CDS	17833733	17834008	0.52	-	0	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	exon	17833733	17834008	.	-	.	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
Ledus.S2	AUGUSTUS	start_codon	17834006	17834008	.	-	0	transcript_id "Ledus.S2G226500.t1"; gene_id "Ledus.S2G226500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8679.t1 is derived from g9709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1330652	1332034	.	-	.	Ledus.S3G015600
Ledus.S3	AUGUSTUS	transcript	1330652	1332034	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	stop_codon	1330649	1330651	.	-	0	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	CDS	1330652	1330703	1	-	1	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	exon	1330652	1330703	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	intron	1330704	1330833	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	CDS	1330834	1330894	1	-	2	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	exon	1330834	1330894	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	intron	1330895	1330973	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	CDS	1330974	1331055	1	-	0	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	exon	1330974	1331055	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	intron	1331056	1331133	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	CDS	1331134	1331195	1	-	2	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	exon	1331134	1331195	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	intron	1331196	1331270	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	CDS	1331271	1331343	1	-	0	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	exon	1331271	1331343	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	intron	1331344	1331431	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	CDS	1331432	1331527	1	-	0	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	exon	1331432	1331527	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	intron	1331528	1331650	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	CDS	1331651	1331731	1	-	0	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	exon	1331651	1331731	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	intron	1331732	1331809	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	CDS	1331810	1332034	0.99	-	0	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	exon	1331810	1332034	.	-	.	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
Ledus.S3	AUGUSTUS	start_codon	1332032	1332034	.	-	0	transcript_id "Ledus.S3G015600.t1"; gene_id "Ledus.S3G015600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11617.t1 is derived from g5235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5540851	5544186	.	+	.	Ledus.S4G077300
Ledus.S4	AUGUSTUS	transcript	5540851	5544186	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	start_codon	5540851	5540853	.	+	0	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5540851	5541187	0.99	+	0	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5540851	5541187	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5541188	5541303	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5541304	5541474	1	+	2	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5541304	5541474	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5541475	5541568	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5541569	5541615	1	+	2	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5541569	5541615	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5541616	5541782	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5541783	5541929	1	+	0	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5541783	5541929	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5541930	5542080	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5542081	5542155	1	+	0	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5542081	5542155	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5542156	5542276	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5542277	5542425	1	+	0	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5542277	5542425	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5542426	5542521	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5542522	5542661	1	+	1	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5542522	5542661	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5542662	5542758	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5542759	5542820	1	+	2	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5542759	5542820	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5542821	5542931	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5542932	5543036	1	+	0	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5542932	5543036	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5543037	5543166	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5543167	5543201	1	+	0	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5543167	5543201	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5543202	5543295	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5543296	5543364	1	+	1	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5543296	5543364	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5543365	5543483	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5543484	5543578	0.91	+	1	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5543484	5543578	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5543579	5543700	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5543701	5543777	0.94	+	2	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5543701	5543777	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5543778	5543921	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5543922	5543999	1	+	0	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5543922	5543999	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	intron	5544000	5544081	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	CDS	5544082	5544186	0.98	+	0	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	exon	5544082	5544186	.	+	.	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
Ledus.S4	AUGUSTUS	stop_codon	5544187	5544189	.	+	0	transcript_id "Ledus.S4G077300.t1"; gene_id "Ledus.S4G077300"
# This transcript jg4484.t2 is derived from g1920.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4485.t1 is derived from g1921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17301786	17302295	.	+	.	Ledus.S1G190600
Ledus.S1	AUGUSTUS	transcript	17301786	17302295	.	+	.	transcript_id "Ledus.S1G190600.t1"; gene_id "Ledus.S1G190600"
Ledus.S1	AUGUSTUS	start_codon	17301786	17301788	.	+	0	transcript_id "Ledus.S1G190600.t1"; gene_id "Ledus.S1G190600"
Ledus.S1	AUGUSTUS	CDS	17301786	17302295	0.57	+	0	transcript_id "Ledus.S1G190600.t1"; gene_id "Ledus.S1G190600"
Ledus.S1	AUGUSTUS	exon	17301786	17302295	.	+	.	transcript_id "Ledus.S1G190600.t1"; gene_id "Ledus.S1G190600"
Ledus.S1	AUGUSTUS	stop_codon	17302296	17302298	.	+	0	transcript_id "Ledus.S1G190600.t1"; gene_id "Ledus.S1G190600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1657.t1 is derived from g8518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11740331	11745316	.	-	.	Ledus.S2G153900
Ledus.S2	AUGUSTUS	transcript	11740331	11745316	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	stop_codon	11740328	11740330	.	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11740331	11740433	1	-	1	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11740331	11740433	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11740434	11740502	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11740503	11740681	1	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11740503	11740681	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11740682	11740758	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11740759	11740824	0.96	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11740759	11740824	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11740825	11740934	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11740935	11741127	1	-	1	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11740935	11741127	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11741128	11741242	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11741243	11741358	0.97	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11741243	11741358	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11741359	11741452	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11741453	11741591	1	-	1	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11741453	11741591	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11741592	11741720	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11741721	11741756	1	-	1	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11741721	11741756	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11741757	11741859	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11741860	11741921	1	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11741860	11741921	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11741922	11742085	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11742086	11742192	1	-	2	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11742086	11742192	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11742193	11742278	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11742279	11742356	1	-	2	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11742279	11742356	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11742357	11742474	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11742475	11742562	0.96	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11742475	11742562	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11742563	11742696	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11742697	11742810	0.97	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11742697	11742810	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11742811	11742972	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11742973	11743059	1	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11742973	11743059	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11743060	11743292	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11743293	11743309	0.47	-	2	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11743293	11743309	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11743310	11743462	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11743463	11743630	0.59	-	2	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11743463	11743630	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11743631	11743726	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11743727	11743845	0.63	-	1	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11743727	11743845	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11743846	11743966	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11743967	11744049	0.96	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11743967	11744049	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11744050	11744145	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11744146	11744271	0.99	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11744146	11744271	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11744272	11744424	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11744425	11744475	0.89	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11744425	11744475	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11744476	11744591	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11744592	11744774	0.99	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11744592	11744774	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11744775	11744854	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11744855	11745197	0.57	-	1	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11744855	11745197	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	intron	11745198	11745296	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	CDS	11745297	11745316	0.5	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	exon	11745297	11745316	.	-	.	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
Ledus.S2	AUGUSTUS	start_codon	11745314	11745316	.	-	0	transcript_id "Ledus.S2G153900.t1"; gene_id "Ledus.S2G153900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2092.t1 is derived from g8955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14699974	14701493	.	-	.	Ledus.S2G197400
Ledus.S2	AUGUSTUS	transcript	14699974	14701493	.	-	.	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	stop_codon	14699971	14699973	.	-	0	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	CDS	14699974	14700129	1	-	0	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	exon	14699974	14700129	.	-	.	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	intron	14700130	14700222	.	-	.	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	CDS	14700223	14700500	0.99	-	2	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	exon	14700223	14700500	.	-	.	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	intron	14700501	14700647	.	-	.	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	CDS	14700648	14700817	1	-	1	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	exon	14700648	14700817	.	-	.	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	intron	14700818	14700918	.	-	.	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	CDS	14700919	14701002	0.61	-	1	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	exon	14700919	14701002	.	-	.	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	intron	14701003	14701053	.	-	.	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	CDS	14701054	14701493	0.65	-	0	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	exon	14701054	14701493	.	-	.	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
Ledus.S2	AUGUSTUS	start_codon	14701491	14701493	.	-	0	transcript_id "Ledus.S2G197400.t1"; gene_id "Ledus.S2G197400"
# This transcript jg1304.t2 is derived from g8165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1305.t1 is derived from g8166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9194519	9195285	.	+	.	Ledus.S2G118700
Ledus.S2	AUGUSTUS	transcript	9194519	9195285	.	+	.	transcript_id "Ledus.S2G118700.t1"; gene_id "Ledus.S2G118700"
Ledus.S2	AUGUSTUS	start_codon	9194519	9194521	.	+	0	transcript_id "Ledus.S2G118700.t1"; gene_id "Ledus.S2G118700"
Ledus.S2	AUGUSTUS	CDS	9194519	9194859	0.74	+	0	transcript_id "Ledus.S2G118700.t1"; gene_id "Ledus.S2G118700"
Ledus.S2	AUGUSTUS	exon	9194519	9194859	.	+	.	transcript_id "Ledus.S2G118700.t1"; gene_id "Ledus.S2G118700"
Ledus.S2	AUGUSTUS	intron	9194860	9194930	.	+	.	transcript_id "Ledus.S2G118700.t1"; gene_id "Ledus.S2G118700"
Ledus.S2	AUGUSTUS	CDS	9194931	9195285	1	+	1	transcript_id "Ledus.S2G118700.t1"; gene_id "Ledus.S2G118700"
Ledus.S2	AUGUSTUS	exon	9194931	9195285	.	+	.	transcript_id "Ledus.S2G118700.t1"; gene_id "Ledus.S2G118700"
Ledus.S2	AUGUSTUS	stop_codon	9195286	9195288	.	+	0	transcript_id "Ledus.S2G118700.t1"; gene_id "Ledus.S2G118700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3093.t1 is derived from g528.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5818155	5820831	.	-	.	Ledus.S1G051400
Ledus.S1	AUGUSTUS	transcript	5818155	5820831	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	stop_codon	5818152	5818154	.	-	0	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	CDS	5818155	5818538	0.58	-	0	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	exon	5818155	5818538	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	intron	5818539	5818676	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	CDS	5818677	5818883	1	-	0	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	exon	5818677	5818883	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	intron	5818884	5819011	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	CDS	5819012	5819137	0.79	-	0	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	exon	5819012	5819137	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	intron	5819138	5819212	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	CDS	5819213	5819560	0.98	-	0	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	exon	5819213	5819560	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	intron	5819561	5819710	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	CDS	5819711	5819809	1	-	0	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	exon	5819711	5819809	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	intron	5819810	5819966	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	CDS	5819967	5820066	1	-	1	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	exon	5819967	5820066	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	intron	5820067	5820187	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	CDS	5820188	5820327	1	-	0	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	exon	5820188	5820327	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	intron	5820328	5820459	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	CDS	5820460	5820831	1	-	0	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	exon	5820460	5820831	.	-	.	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
Ledus.S1	AUGUSTUS	start_codon	5820829	5820831	.	-	0	transcript_id "Ledus.S1G051400.t1"; gene_id "Ledus.S1G051400"
# This transcript jg7303.t2 is derived from g11974.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7304.t1 is derived from g11975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	888156	895327	.	+	.	Ledus.S5G008200
Ledus.S5	AUGUSTUS	transcript	888156	895327	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	start_codon	888156	888158	.	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	888156	888985	0.67	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	888156	888985	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	888986	889186	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	889187	889299	1	+	1	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	889187	889299	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	889300	889450	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	889451	889659	1	+	2	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	889451	889659	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	889660	889736	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	889737	889856	1	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	889737	889856	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	889857	889967	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	889968	890096	0.95	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	889968	890096	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	890097	890302	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	890303	890428	1	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	890303	890428	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	890429	890562	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	890563	890621	1	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	890563	890621	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	890622	890763	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	890764	890863	1	+	1	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	890764	890863	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	890864	891164	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	891165	891282	1	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	891165	891282	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	891283	891366	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	891367	891576	1	+	2	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	891367	891576	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	891577	891667	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	891668	891986	1	+	2	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	891668	891986	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	891987	892095	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	892096	892189	1	+	1	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	892096	892189	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	892190	892376	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	892377	892485	1	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	892377	892485	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	892486	892568	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	892569	892840	0.82	+	2	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	892569	892840	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	892841	892961	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	892962	893089	1	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	892962	893089	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	893090	893186	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	893187	893421	0.89	+	1	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	893187	893421	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	893422	893553	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	893554	893742	0.95	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	893554	893742	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	893743	893858	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	893859	894127	0.99	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	893859	894127	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	894128	894213	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	894214	894421	1	+	1	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	894214	894421	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	894422	894505	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	894506	894745	1	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	894506	894745	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	894746	894954	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	894955	895043	1	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	894955	895043	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	895044	895182	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	895183	895327	1	+	1	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	895183	895327	.	+	.	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	stop_codon	895328	895330	.	+	0	transcript_id "Ledus.S5G008200.t1"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	transcript	888156	895327	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	start_codon	888156	888158	.	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	888156	888985	0.65	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	888156	888985	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	888986	889186	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	889187	889299	1	+	1	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	889187	889299	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	889300	889450	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	889451	889659	1	+	2	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	889451	889659	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	889660	889736	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	889737	889856	1	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	889737	889856	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	889857	889967	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	889968	890096	0.97	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	889968	890096	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	890097	890302	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	890303	890428	1	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	890303	890428	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	890429	890562	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	890563	890621	1	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	890563	890621	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	890622	890763	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	890764	890863	1	+	1	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	890764	890863	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	890864	891164	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	891165	891282	1	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	891165	891282	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	891283	891366	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	891367	891576	1	+	2	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	891367	891576	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	891577	891667	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	891668	891986	0.98	+	2	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	891668	891986	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	891987	892095	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	892096	892189	1	+	1	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	892096	892189	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	892190	892376	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	892377	892485	1	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	892377	892485	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	892486	892568	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	892569	892840	0.78	+	2	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	892569	892840	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	892841	892961	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	892962	893089	1	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	892962	893089	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	893090	893186	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	893187	893421	0.88	+	1	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	893187	893421	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	893422	893553	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	893554	893742	0.87	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	893554	893742	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	893743	893858	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	893859	894127	0.99	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	893859	894127	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	894128	894213	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	894214	894421	1	+	1	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	894214	894421	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	894422	894505	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	894506	894745	1	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	894506	894745	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	894746	894954	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	894955	894995	1	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	894955	894995	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	intron	894996	895182	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	CDS	895183	895327	1	+	1	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	exon	895183	895327	.	+	.	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
Ledus.S5	AUGUSTUS	stop_codon	895328	895330	.	+	0	transcript_id "Ledus.S5G008200.t2"; gene_id "Ledus.S5G008200"
# This transcript jg11763.t2 is derived from g5382.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11764.t1 is derived from g5383.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6656461	6658511	.	+	.	Ledus.S4G092000
Ledus.S4	AUGUSTUS	transcript	6656461	6658511	.	+	.	transcript_id "Ledus.S4G092000.t1"; gene_id "Ledus.S4G092000"
Ledus.S4	AUGUSTUS	start_codon	6656461	6656463	.	+	0	transcript_id "Ledus.S4G092000.t1"; gene_id "Ledus.S4G092000"
Ledus.S4	AUGUSTUS	CDS	6656461	6657675	1	+	0	transcript_id "Ledus.S4G092000.t1"; gene_id "Ledus.S4G092000"
Ledus.S4	AUGUSTUS	exon	6656461	6657675	.	+	.	transcript_id "Ledus.S4G092000.t1"; gene_id "Ledus.S4G092000"
Ledus.S4	AUGUSTUS	intron	6657676	6657756	.	+	.	transcript_id "Ledus.S4G092000.t1"; gene_id "Ledus.S4G092000"
Ledus.S4	AUGUSTUS	CDS	6657757	6657918	1	+	0	transcript_id "Ledus.S4G092000.t1"; gene_id "Ledus.S4G092000"
Ledus.S4	AUGUSTUS	exon	6657757	6657918	.	+	.	transcript_id "Ledus.S4G092000.t1"; gene_id "Ledus.S4G092000"
Ledus.S4	AUGUSTUS	intron	6657919	6658043	.	+	.	transcript_id "Ledus.S4G092000.t1"; gene_id "Ledus.S4G092000"
Ledus.S4	AUGUSTUS	CDS	6658044	6658511	1	+	0	transcript_id "Ledus.S4G092000.t1"; gene_id "Ledus.S4G092000"
Ledus.S4	AUGUSTUS	exon	6658044	6658511	.	+	.	transcript_id "Ledus.S4G092000.t1"; gene_id "Ledus.S4G092000"
Ledus.S4	AUGUSTUS	stop_codon	6658512	6658514	.	+	0	transcript_id "Ledus.S4G092000.t1"; gene_id "Ledus.S4G092000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6072.t1 is derived from g3515.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28815698	28816006	.	+	.	Ledus.S1G349300
Ledus.S1	AUGUSTUS	transcript	28815698	28816006	.	+	.	transcript_id "Ledus.S1G349300.t1"; gene_id "Ledus.S1G349300"
Ledus.S1	AUGUSTUS	start_codon	28815698	28815700	.	+	0	transcript_id "Ledus.S1G349300.t1"; gene_id "Ledus.S1G349300"
Ledus.S1	AUGUSTUS	CDS	28815698	28816006	0.22	+	0	transcript_id "Ledus.S1G349300.t1"; gene_id "Ledus.S1G349300"
Ledus.S1	AUGUSTUS	exon	28815698	28816006	.	+	.	transcript_id "Ledus.S1G349300.t1"; gene_id "Ledus.S1G349300"
Ledus.S1	AUGUSTUS	stop_codon	28816007	28816009	.	+	0	transcript_id "Ledus.S1G349300.t1"; gene_id "Ledus.S1G349300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6496.t1 is derived from g3939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31630554	31632513	.	+	.	Ledus.S1G391700
Ledus.S1	AUGUSTUS	transcript	31630554	31632513	.	+	.	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	start_codon	31630554	31630556	.	+	0	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	CDS	31630554	31631072	0.93	+	0	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	exon	31630554	31631072	.	+	.	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	intron	31631073	31631145	.	+	.	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	CDS	31631146	31631598	1	+	0	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	exon	31631146	31631598	.	+	.	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	intron	31631599	31631698	.	+	.	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	CDS	31631699	31631767	1	+	0	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	exon	31631699	31631767	.	+	.	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	intron	31631768	31631882	.	+	.	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	CDS	31631883	31631941	1	+	0	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	exon	31631883	31631941	.	+	.	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	intron	31631942	31632026	.	+	.	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	CDS	31632027	31632513	1	+	1	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	exon	31632027	31632513	.	+	.	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
Ledus.S1	AUGUSTUS	stop_codon	31632514	31632516	.	+	0	transcript_id "Ledus.S1G391700.t1"; gene_id "Ledus.S1G391700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3330.t1 is derived from g765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7495669	7496273	.	+	.	Ledus.S1G075100
Ledus.S1	AUGUSTUS	transcript	7495669	7496273	.	+	.	transcript_id "Ledus.S1G075100.t1"; gene_id "Ledus.S1G075100"
Ledus.S1	AUGUSTUS	start_codon	7495669	7495671	.	+	0	transcript_id "Ledus.S1G075100.t1"; gene_id "Ledus.S1G075100"
Ledus.S1	AUGUSTUS	CDS	7495669	7495738	0.96	+	0	transcript_id "Ledus.S1G075100.t1"; gene_id "Ledus.S1G075100"
Ledus.S1	AUGUSTUS	exon	7495669	7495738	.	+	.	transcript_id "Ledus.S1G075100.t1"; gene_id "Ledus.S1G075100"
Ledus.S1	AUGUSTUS	intron	7495739	7495971	.	+	.	transcript_id "Ledus.S1G075100.t1"; gene_id "Ledus.S1G075100"
Ledus.S1	AUGUSTUS	CDS	7495972	7496273	0.83	+	2	transcript_id "Ledus.S1G075100.t1"; gene_id "Ledus.S1G075100"
Ledus.S1	AUGUSTUS	exon	7495972	7496273	.	+	.	transcript_id "Ledus.S1G075100.t1"; gene_id "Ledus.S1G075100"
Ledus.S1	AUGUSTUS	stop_codon	7496274	7496276	.	+	0	transcript_id "Ledus.S1G075100.t1"; gene_id "Ledus.S1G075100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7320.t1 is derived from g11991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1155611	1158778	.	+	.	Ledus.S5G009800
Ledus.S5	AUGUSTUS	transcript	1155611	1158778	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	start_codon	1155611	1155613	.	+	0	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	CDS	1155611	1155751	0.63	+	0	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	exon	1155611	1155751	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	intron	1155752	1155846	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	CDS	1155847	1155960	1	+	0	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	exon	1155847	1155960	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	intron	1155961	1156040	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	CDS	1156041	1156567	0.46	+	0	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	exon	1156041	1156567	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	intron	1156568	1156654	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	CDS	1156655	1156831	0.71	+	1	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	exon	1156655	1156831	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	intron	1156832	1156963	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	CDS	1156964	1156996	0.7	+	1	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	exon	1156964	1156996	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	intron	1156997	1157201	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	CDS	1157202	1157208	0.82	+	1	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	exon	1157202	1157208	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	intron	1157209	1157379	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	CDS	1157380	1157480	0.95	+	0	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	exon	1157380	1157480	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	intron	1157481	1157577	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	CDS	1157578	1157779	1	+	1	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	exon	1157578	1157779	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	intron	1157780	1157850	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	CDS	1157851	1158045	1	+	0	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	exon	1157851	1158045	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	intron	1158046	1158129	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	CDS	1158130	1158295	1	+	0	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	exon	1158130	1158295	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	intron	1158296	1158371	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	CDS	1158372	1158778	1	+	2	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	exon	1158372	1158778	.	+	.	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
Ledus.S5	AUGUSTUS	stop_codon	1158779	1158781	.	+	0	transcript_id "Ledus.S5G009800.t1"; gene_id "Ledus.S5G009800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg815.t1 is derived from g7676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5261536	5265925	.	+	.	Ledus.S2G069700
Ledus.S2	AUGUSTUS	transcript	5261536	5265925	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	start_codon	5261536	5261538	.	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5261536	5261772	0.57	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5261536	5261772	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5261773	5261855	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5261856	5261989	0.98	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5261856	5261989	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5261990	5262097	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5262098	5262155	0.99	+	1	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5262098	5262155	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5262156	5262298	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5262299	5262514	1	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5262299	5262514	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5262515	5262605	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5262606	5262881	1	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5262606	5262881	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5262882	5263026	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5263027	5263161	1	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5263027	5263161	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5263162	5263305	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5263306	5263431	0.99	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5263306	5263431	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5263432	5263550	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5263551	5263595	0.97	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5263551	5263595	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5263596	5263718	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5263719	5263826	0.95	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5263719	5263826	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5263827	5263935	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5263936	5264078	0.89	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5263936	5264078	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5264079	5264190	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5264191	5264314	1	+	1	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5264191	5264314	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5264315	5264455	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5264456	5264530	1	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5264456	5264530	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5264531	5264625	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5264626	5265096	1	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5264626	5265096	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5265097	5265230	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5265231	5265323	1	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5265231	5265323	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5265324	5265417	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5265418	5265541	1	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5265418	5265541	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	intron	5265542	5265623	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	CDS	5265624	5265925	1	+	2	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	exon	5265624	5265925	.	+	.	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
Ledus.S2	AUGUSTUS	stop_codon	5265926	5265928	.	+	0	transcript_id "Ledus.S2G069700.t1"; gene_id "Ledus.S2G069700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5806.t1 is derived from g3248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27035619	27035828	.	-	.	Ledus.S1G322700
Ledus.S1	AUGUSTUS	transcript	27035619	27035828	.	-	.	transcript_id "Ledus.S1G322700.t1"; gene_id "Ledus.S1G322700"
Ledus.S1	AUGUSTUS	stop_codon	27035616	27035618	.	-	0	transcript_id "Ledus.S1G322700.t1"; gene_id "Ledus.S1G322700"
Ledus.S1	AUGUSTUS	CDS	27035619	27035828	0.64	-	0	transcript_id "Ledus.S1G322700.t1"; gene_id "Ledus.S1G322700"
Ledus.S1	AUGUSTUS	exon	27035619	27035828	.	-	.	transcript_id "Ledus.S1G322700.t1"; gene_id "Ledus.S1G322700"
Ledus.S1	AUGUSTUS	start_codon	27035826	27035828	.	-	0	transcript_id "Ledus.S1G322700.t1"; gene_id "Ledus.S1G322700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11794.t1 is derived from g5413.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6814832	6817000	.	+	.	Ledus.S4G095000
Ledus.S4	AUGUSTUS	transcript	6814832	6817000	.	+	.	transcript_id "Ledus.S4G095000.t1"; gene_id "Ledus.S4G095000"
Ledus.S4	AUGUSTUS	start_codon	6814832	6814834	.	+	0	transcript_id "Ledus.S4G095000.t1"; gene_id "Ledus.S4G095000"
Ledus.S4	AUGUSTUS	CDS	6814832	6814839	0.92	+	0	transcript_id "Ledus.S4G095000.t1"; gene_id "Ledus.S4G095000"
Ledus.S4	AUGUSTUS	exon	6814832	6814839	.	+	.	transcript_id "Ledus.S4G095000.t1"; gene_id "Ledus.S4G095000"
Ledus.S4	AUGUSTUS	intron	6814840	6814989	.	+	.	transcript_id "Ledus.S4G095000.t1"; gene_id "Ledus.S4G095000"
Ledus.S4	AUGUSTUS	CDS	6814990	6817000	0.91	+	1	transcript_id "Ledus.S4G095000.t1"; gene_id "Ledus.S4G095000"
Ledus.S4	AUGUSTUS	exon	6814990	6817000	.	+	.	transcript_id "Ledus.S4G095000.t1"; gene_id "Ledus.S4G095000"
Ledus.S4	AUGUSTUS	stop_codon	6817001	6817003	.	+	0	transcript_id "Ledus.S4G095000.t1"; gene_id "Ledus.S4G095000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3521.t1 is derived from g957.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9035300	9035847	.	+	.	Ledus.S1G094200
Ledus.S1	AUGUSTUS	transcript	9035300	9035847	.	+	.	transcript_id "Ledus.S1G094200.t1"; gene_id "Ledus.S1G094200"
Ledus.S1	AUGUSTUS	start_codon	9035300	9035302	.	+	0	transcript_id "Ledus.S1G094200.t1"; gene_id "Ledus.S1G094200"
Ledus.S1	AUGUSTUS	CDS	9035300	9035595	0.51	+	0	transcript_id "Ledus.S1G094200.t1"; gene_id "Ledus.S1G094200"
Ledus.S1	AUGUSTUS	exon	9035300	9035595	.	+	.	transcript_id "Ledus.S1G094200.t1"; gene_id "Ledus.S1G094200"
Ledus.S1	AUGUSTUS	intron	9035596	9035837	.	+	.	transcript_id "Ledus.S1G094200.t1"; gene_id "Ledus.S1G094200"
Ledus.S1	AUGUSTUS	CDS	9035838	9035847	1	+	1	transcript_id "Ledus.S1G094200.t1"; gene_id "Ledus.S1G094200"
Ledus.S1	AUGUSTUS	exon	9035838	9035847	.	+	.	transcript_id "Ledus.S1G094200.t1"; gene_id "Ledus.S1G094200"
Ledus.S1	AUGUSTUS	stop_codon	9035848	9035850	.	+	0	transcript_id "Ledus.S1G094200.t1"; gene_id "Ledus.S1G094200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12546.t1 is derived from g6168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12822696	12823579	.	-	.	Ledus.S4G170200
Ledus.S4	AUGUSTUS	transcript	12822696	12823579	.	-	.	transcript_id "Ledus.S4G170200.t1"; gene_id "Ledus.S4G170200"
Ledus.S4	AUGUSTUS	stop_codon	12822693	12822695	.	-	0	transcript_id "Ledus.S4G170200.t1"; gene_id "Ledus.S4G170200"
Ledus.S4	AUGUSTUS	CDS	12822696	12822868	0.46	-	2	transcript_id "Ledus.S4G170200.t1"; gene_id "Ledus.S4G170200"
Ledus.S4	AUGUSTUS	exon	12822696	12822868	.	-	.	transcript_id "Ledus.S4G170200.t1"; gene_id "Ledus.S4G170200"
Ledus.S4	AUGUSTUS	intron	12822869	12822991	.	-	.	transcript_id "Ledus.S4G170200.t1"; gene_id "Ledus.S4G170200"
Ledus.S4	AUGUSTUS	CDS	12822992	12823102	0.84	-	2	transcript_id "Ledus.S4G170200.t1"; gene_id "Ledus.S4G170200"
Ledus.S4	AUGUSTUS	exon	12822992	12823102	.	-	.	transcript_id "Ledus.S4G170200.t1"; gene_id "Ledus.S4G170200"
Ledus.S4	AUGUSTUS	intron	12823103	12823461	.	-	.	transcript_id "Ledus.S4G170200.t1"; gene_id "Ledus.S4G170200"
Ledus.S4	AUGUSTUS	CDS	12823462	12823579	0.67	-	0	transcript_id "Ledus.S4G170200.t1"; gene_id "Ledus.S4G170200"
Ledus.S4	AUGUSTUS	exon	12823462	12823579	.	-	.	transcript_id "Ledus.S4G170200.t1"; gene_id "Ledus.S4G170200"
Ledus.S4	AUGUSTUS	start_codon	12823577	12823579	.	-	0	transcript_id "Ledus.S4G170200.t1"; gene_id "Ledus.S4G170200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6610.t1 is derived from g4053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32639741	32642631	.	+	.	Ledus.S1G403100
Ledus.S1	AUGUSTUS	transcript	32639741	32642631	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	start_codon	32639741	32639743	.	+	0	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	CDS	32639741	32639860	1	+	0	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	exon	32639741	32639860	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	intron	32639861	32640362	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	CDS	32640363	32640414	1	+	0	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	exon	32640363	32640414	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	intron	32640415	32640509	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	CDS	32640510	32640590	0.98	+	2	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	exon	32640510	32640590	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	intron	32640591	32640700	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	CDS	32640701	32640819	1	+	2	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	exon	32640701	32640819	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	intron	32640820	32641080	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	CDS	32641081	32641306	1	+	0	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	exon	32641081	32641306	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	intron	32641307	32641403	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	CDS	32641404	32641522	1	+	2	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	exon	32641404	32641522	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	intron	32641523	32641613	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	CDS	32641614	32642341	1	+	0	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	exon	32641614	32642341	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	intron	32642342	32642561	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	CDS	32642562	32642631	1	+	1	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	exon	32642562	32642631	.	+	.	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
Ledus.S1	AUGUSTUS	stop_codon	32642632	32642634	.	+	0	transcript_id "Ledus.S1G403100.t1"; gene_id "Ledus.S1G403100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9115.t1 is derived from g10145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4668647	4669834	.	+	.	Ledus.S3G059200
Ledus.S3	AUGUSTUS	transcript	4668647	4669834	.	+	.	transcript_id "Ledus.S3G059200.t1"; gene_id "Ledus.S3G059200"
Ledus.S3	AUGUSTUS	start_codon	4668647	4668649	.	+	0	transcript_id "Ledus.S3G059200.t1"; gene_id "Ledus.S3G059200"
Ledus.S3	AUGUSTUS	CDS	4668647	4669834	0.54	+	0	transcript_id "Ledus.S3G059200.t1"; gene_id "Ledus.S3G059200"
Ledus.S3	AUGUSTUS	exon	4668647	4669834	.	+	.	transcript_id "Ledus.S3G059200.t1"; gene_id "Ledus.S3G059200"
Ledus.S3	AUGUSTUS	stop_codon	4669835	4669837	.	+	0	transcript_id "Ledus.S3G059200.t1"; gene_id "Ledus.S3G059200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2578.t1 is derived from g9441.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19203050	19203247	.	-	.	Ledus.S2G246000
Ledus.S2	AUGUSTUS	transcript	19203050	19203247	.	-	.	transcript_id "Ledus.S2G246000.t1"; gene_id "Ledus.S2G246000"
Ledus.S2	AUGUSTUS	stop_codon	19203047	19203049	.	-	0	transcript_id "Ledus.S2G246000.t1"; gene_id "Ledus.S2G246000"
Ledus.S2	AUGUSTUS	CDS	19203050	19203247	0.56	-	0	transcript_id "Ledus.S2G246000.t1"; gene_id "Ledus.S2G246000"
Ledus.S2	AUGUSTUS	exon	19203050	19203247	.	-	.	transcript_id "Ledus.S2G246000.t1"; gene_id "Ledus.S2G246000"
Ledus.S2	AUGUSTUS	start_codon	19203245	19203247	.	-	0	transcript_id "Ledus.S2G246000.t1"; gene_id "Ledus.S2G246000"
# This transcript jg8578.t2 is derived from g9608.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8578.t3 is derived from g9608.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8579.t1 is derived from g9609.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	304803	306473	.	-	.	Ledus.S3G005600
Ledus.S3	AUGUSTUS	transcript	304803	306473	.	-	.	transcript_id "Ledus.S3G005600.t1"; gene_id "Ledus.S3G005600"
Ledus.S3	AUGUSTUS	stop_codon	304800	304802	.	-	0	transcript_id "Ledus.S3G005600.t1"; gene_id "Ledus.S3G005600"
Ledus.S3	AUGUSTUS	CDS	304803	306473	1	-	0	transcript_id "Ledus.S3G005600.t1"; gene_id "Ledus.S3G005600"
Ledus.S3	AUGUSTUS	exon	304803	306473	.	-	.	transcript_id "Ledus.S3G005600.t1"; gene_id "Ledus.S3G005600"
Ledus.S3	AUGUSTUS	start_codon	306471	306473	.	-	0	transcript_id "Ledus.S3G005600.t1"; gene_id "Ledus.S3G005600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7568.t1 is derived from g12239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4082422	4084474	.	+	.	Ledus.S5G034600
Ledus.S5	AUGUSTUS	transcript	4082422	4084474	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	start_codon	4082422	4082424	.	+	0	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	CDS	4082422	4082529	0.99	+	0	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	exon	4082422	4082529	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	intron	4082530	4082688	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	CDS	4082689	4082820	1	+	0	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	exon	4082689	4082820	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	intron	4082821	4082909	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	CDS	4082910	4083066	1	+	0	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	exon	4082910	4083066	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	intron	4083067	4083166	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	CDS	4083167	4083294	1	+	2	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	exon	4083167	4083294	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	intron	4083295	4083442	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	CDS	4083443	4083556	0.99	+	0	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	exon	4083443	4083556	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	intron	4083557	4083684	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	CDS	4083685	4083758	1	+	0	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	exon	4083685	4083758	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	intron	4083759	4083845	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	CDS	4083846	4083981	0.92	+	1	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	exon	4083846	4083981	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	intron	4083982	4084096	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	CDS	4084097	4084474	0.64	+	0	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	exon	4084097	4084474	.	+	.	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
Ledus.S5	AUGUSTUS	stop_codon	4084475	4084477	.	+	0	transcript_id "Ledus.S5G034600.t1"; gene_id "Ledus.S5G034600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10417.t1 is derived from g11447.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15041461	15043453	.	-	.	Ledus.S3G189400
Ledus.S3	AUGUSTUS	transcript	15041461	15043453	.	-	.	transcript_id "Ledus.S3G189400.t1"; gene_id "Ledus.S3G189400"
Ledus.S3	AUGUSTUS	stop_codon	15041458	15041460	.	-	0	transcript_id "Ledus.S3G189400.t1"; gene_id "Ledus.S3G189400"
Ledus.S3	AUGUSTUS	CDS	15041461	15041519	0.58	-	2	transcript_id "Ledus.S3G189400.t1"; gene_id "Ledus.S3G189400"
Ledus.S3	AUGUSTUS	exon	15041461	15041519	.	-	.	transcript_id "Ledus.S3G189400.t1"; gene_id "Ledus.S3G189400"
Ledus.S3	AUGUSTUS	intron	15041520	15041610	.	-	.	transcript_id "Ledus.S3G189400.t1"; gene_id "Ledus.S3G189400"
Ledus.S3	AUGUSTUS	CDS	15041611	15043453	0.29	-	0	transcript_id "Ledus.S3G189400.t1"; gene_id "Ledus.S3G189400"
Ledus.S3	AUGUSTUS	exon	15041611	15043453	.	-	.	transcript_id "Ledus.S3G189400.t1"; gene_id "Ledus.S3G189400"
Ledus.S3	AUGUSTUS	start_codon	15043451	15043453	.	-	0	transcript_id "Ledus.S3G189400.t1"; gene_id "Ledus.S3G189400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7004.t1 is derived from g6535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	751563	755045	.	+	.	Ledus.C7G006500
Ledus.C7	AUGUSTUS	transcript	751563	755045	.	+	.	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	start_codon	751563	751565	.	+	0	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	CDS	751563	752090	0.91	+	0	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	exon	751563	752090	.	+	.	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	intron	752091	753721	.	+	.	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	CDS	753722	753961	1	+	0	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	exon	753722	753961	.	+	.	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	intron	753962	754160	.	+	.	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	CDS	754161	754239	1	+	0	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	exon	754161	754239	.	+	.	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	intron	754240	754770	.	+	.	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	CDS	754771	755045	1	+	2	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	exon	754771	755045	.	+	.	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	stop_codon	755046	755048	.	+	0	transcript_id "Ledus.C7G006500.t1"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	transcript	753364	755045	.	+	.	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	start_codon	753364	753366	.	+	0	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	CDS	753364	753423	0.79	+	0	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	exon	753364	753423	.	+	.	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	intron	753424	753721	.	+	.	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	CDS	753722	753961	1	+	0	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	exon	753722	753961	.	+	.	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	intron	753962	754160	.	+	.	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	CDS	754161	754239	1	+	0	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	exon	754161	754239	.	+	.	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	intron	754240	754770	.	+	.	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	CDS	754771	755045	1	+	2	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	exon	754771	755045	.	+	.	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
Ledus.C7	AUGUSTUS	stop_codon	755046	755048	.	+	0	transcript_id "Ledus.C7G006500.t2"; gene_id "Ledus.C7G006500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7594.t1 is derived from g12265.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4273851	4275596	.	+	.	Ledus.S5G037200
Ledus.S5	AUGUSTUS	transcript	4273851	4275596	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	start_codon	4273851	4273853	.	+	0	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4273851	4273918	0.46	+	0	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4273851	4273918	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4273919	4274009	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4274010	4274256	1	+	1	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4274010	4274256	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4274257	4274362	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4274363	4274422	1	+	0	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4274363	4274422	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4274423	4274620	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4274621	4274733	1	+	0	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4274621	4274733	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4274734	4274805	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4274806	4274874	1	+	1	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4274806	4274874	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4274875	4275079	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4275080	4275131	1	+	1	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4275080	4275131	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4275132	4275235	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4275236	4275323	0.53	+	0	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4275236	4275323	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4275324	4275403	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4275404	4275440	0.44	+	2	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4275404	4275440	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4275441	4275538	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4275539	4275596	0.7	+	1	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4275539	4275596	.	+	.	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	stop_codon	4275597	4275599	.	+	0	transcript_id "Ledus.S5G037200.t1"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	transcript	4273851	4275596	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	start_codon	4273851	4273853	.	+	0	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4273851	4273918	0.31	+	0	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4273851	4273918	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4273919	4274015	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4274016	4274256	1	+	1	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4274016	4274256	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4274257	4274362	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4274363	4274422	1	+	0	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4274363	4274422	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4274423	4274620	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4274621	4274733	1	+	0	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4274621	4274733	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4274734	4274805	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4274806	4274874	1	+	1	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4274806	4274874	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4274875	4275079	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4275080	4275131	1	+	1	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4275080	4275131	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4275132	4275235	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4275236	4275323	0.51	+	0	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4275236	4275323	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4275324	4275403	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4275404	4275440	0.37	+	2	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4275404	4275440	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4275441	4275538	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4275539	4275596	0.58	+	1	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4275539	4275596	.	+	.	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	stop_codon	4275597	4275599	.	+	0	transcript_id "Ledus.S5G037200.t2"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	transcript	4273851	4275596	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	start_codon	4273851	4273853	.	+	0	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4273851	4273918	0.42	+	0	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4273851	4273918	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4273919	4274009	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4274010	4274256	1	+	1	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4274010	4274256	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4274257	4274385	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4274386	4274422	0.48	+	0	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4274386	4274422	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4274423	4274615	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4274616	4274733	0.52	+	2	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4274616	4274733	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4274734	4274805	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4274806	4274874	1	+	1	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4274806	4274874	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4274875	4275079	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4275080	4275131	1	+	1	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4275080	4275131	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4275132	4275235	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4275236	4275323	0.49	+	0	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4275236	4275323	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4275324	4275403	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4275404	4275440	0.35	+	2	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4275404	4275440	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	intron	4275441	4275538	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	CDS	4275539	4275596	0.57	+	1	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	exon	4275539	4275596	.	+	.	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
Ledus.S5	AUGUSTUS	stop_codon	4275597	4275599	.	+	0	transcript_id "Ledus.S5G037200.t3"; gene_id "Ledus.S5G037200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1512.t1 is derived from g8373.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10647352	10649657	.	-	.	Ledus.S2G139400
Ledus.S2	AUGUSTUS	transcript	10647352	10649657	.	-	.	transcript_id "Ledus.S2G139400.t1"; gene_id "Ledus.S2G139400"
Ledus.S2	AUGUSTUS	stop_codon	10647349	10647351	.	-	0	transcript_id "Ledus.S2G139400.t1"; gene_id "Ledus.S2G139400"
Ledus.S2	AUGUSTUS	CDS	10647352	10648938	1	-	0	transcript_id "Ledus.S2G139400.t1"; gene_id "Ledus.S2G139400"
Ledus.S2	AUGUSTUS	exon	10647352	10648938	.	-	.	transcript_id "Ledus.S2G139400.t1"; gene_id "Ledus.S2G139400"
Ledus.S2	AUGUSTUS	intron	10648939	10649255	.	-	.	transcript_id "Ledus.S2G139400.t1"; gene_id "Ledus.S2G139400"
Ledus.S2	AUGUSTUS	CDS	10649256	10649657	0.99	-	0	transcript_id "Ledus.S2G139400.t1"; gene_id "Ledus.S2G139400"
Ledus.S2	AUGUSTUS	exon	10649256	10649657	.	-	.	transcript_id "Ledus.S2G139400.t1"; gene_id "Ledus.S2G139400"
Ledus.S2	AUGUSTUS	start_codon	10649655	10649657	.	-	0	transcript_id "Ledus.S2G139400.t1"; gene_id "Ledus.S2G139400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3647.t1 is derived from g1083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10370074	10372012	.	-	.	Ledus.S1G106800
Ledus.S1	AUGUSTUS	transcript	10370074	10372012	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	stop_codon	10370071	10370073	.	-	0	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	CDS	10370074	10370193	1	-	0	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	exon	10370074	10370193	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	intron	10370194	10370279	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	CDS	10370280	10370369	1	-	0	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	exon	10370280	10370369	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	intron	10370370	10370449	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	CDS	10370450	10370530	1	-	0	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	exon	10370450	10370530	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	intron	10370531	10370616	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	CDS	10370617	10370663	1	-	2	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	exon	10370617	10370663	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	intron	10370664	10370737	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	CDS	10370738	10370757	1	-	1	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	exon	10370738	10370757	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	intron	10370758	10370858	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	CDS	10370859	10371015	1	-	2	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	exon	10370859	10371015	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	intron	10371016	10371102	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	CDS	10371103	10371161	0.97	-	1	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	exon	10371103	10371161	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	intron	10371162	10371263	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	CDS	10371264	10371334	0.97	-	0	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	exon	10371264	10371334	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	intron	10371335	10371419	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	CDS	10371420	10371483	1	-	1	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	exon	10371420	10371483	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	intron	10371484	10371576	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	CDS	10371577	10371695	1	-	0	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	exon	10371577	10371695	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	intron	10371696	10371773	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	CDS	10371774	10371889	1	-	2	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	exon	10371774	10371889	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	intron	10371890	10371981	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	CDS	10371982	10372012	0.88	-	0	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	exon	10371982	10372012	.	-	.	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
Ledus.S1	AUGUSTUS	start_codon	10372010	10372012	.	-	0	transcript_id "Ledus.S1G106800.t1"; gene_id "Ledus.S1G106800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2607.t1 is derived from g40.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	373788	374243	.	+	.	Ledus.S1G002800
Ledus.S1	AUGUSTUS	transcript	373788	374243	.	+	.	transcript_id "Ledus.S1G002800.t1"; gene_id "Ledus.S1G002800"
Ledus.S1	AUGUSTUS	start_codon	373788	373790	.	+	0	transcript_id "Ledus.S1G002800.t1"; gene_id "Ledus.S1G002800"
Ledus.S1	AUGUSTUS	CDS	373788	374243	0.63	+	0	transcript_id "Ledus.S1G002800.t1"; gene_id "Ledus.S1G002800"
Ledus.S1	AUGUSTUS	exon	373788	374243	.	+	.	transcript_id "Ledus.S1G002800.t1"; gene_id "Ledus.S1G002800"
Ledus.S1	AUGUSTUS	stop_codon	374244	374246	.	+	0	transcript_id "Ledus.S1G002800.t1"; gene_id "Ledus.S1G002800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5887.t1 is derived from g3329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27596381	27598106	.	+	.	Ledus.S1G330800
Ledus.S1	AUGUSTUS	transcript	27596521	27598106	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	start_codon	27596521	27596523	.	+	0	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27596521	27596590	0.88	+	0	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27596521	27596590	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27596591	27596860	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27596861	27597070	1	+	2	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27596861	27597070	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27597071	27597151	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27597152	27597301	1	+	2	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27597152	27597301	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27597302	27597382	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27597383	27597468	1	+	2	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27597383	27597468	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27597469	27597542	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27597543	27597637	1	+	0	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27597543	27597637	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27597638	27597734	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27597735	27597860	0.99	+	1	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27597735	27597860	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27597861	27597961	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27597962	27598106	0.98	+	1	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27597962	27598106	.	+	.	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	stop_codon	27598107	27598109	.	+	0	transcript_id "Ledus.S1G330800.t1"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	transcript	27596381	27598106	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	start_codon	27596381	27596383	.	+	0	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27596381	27596590	0.72	+	0	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27596381	27596590	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27596591	27596669	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27596670	27596751	0.96	+	0	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27596670	27596751	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27596752	27596860	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27596861	27597070	0.98	+	2	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27596861	27597070	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27597071	27597151	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27597152	27597301	1	+	2	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27597152	27597301	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27597302	27597382	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27597383	27597468	1	+	2	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27597383	27597468	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27597469	27597542	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27597543	27597637	1	+	0	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27597543	27597637	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27597638	27597734	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27597735	27597860	1	+	1	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27597735	27597860	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	intron	27597861	27597961	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	CDS	27597962	27598106	0.99	+	1	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	exon	27597962	27598106	.	+	.	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
Ledus.S1	AUGUSTUS	stop_codon	27598107	27598109	.	+	0	transcript_id "Ledus.S1G330800.t2"; gene_id "Ledus.S1G330800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7871.t1 is derived from g12542.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7555269	7556128	.	-	.	Ledus.S5G064900
Ledus.S5	AUGUSTUS	transcript	7555269	7556128	.	-	.	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	stop_codon	7555266	7555268	.	-	0	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	CDS	7555269	7555272	0.96	-	1	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	exon	7555269	7555272	.	-	.	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	intron	7555273	7555604	.	-	.	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	CDS	7555605	7555709	0.62	-	1	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	exon	7555605	7555709	.	-	.	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	intron	7555710	7555921	.	-	.	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	CDS	7555922	7556002	0.55	-	1	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	exon	7555922	7556002	.	-	.	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	intron	7556003	7556087	.	-	.	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	CDS	7556088	7556128	0.94	-	0	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	exon	7556088	7556128	.	-	.	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
Ledus.S5	AUGUSTUS	start_codon	7556126	7556128	.	-	0	transcript_id "Ledus.S5G064900.t1"; gene_id "Ledus.S5G064900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1700.t1 is derived from g8561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11961262	11962412	.	-	.	Ledus.S2G158200
Ledus.S2	AUGUSTUS	transcript	11961262	11962412	.	-	.	transcript_id "Ledus.S2G158200.t1"; gene_id "Ledus.S2G158200"
Ledus.S2	AUGUSTUS	stop_codon	11961259	11961261	.	-	0	transcript_id "Ledus.S2G158200.t1"; gene_id "Ledus.S2G158200"
Ledus.S2	AUGUSTUS	CDS	11961262	11961975	1	-	0	transcript_id "Ledus.S2G158200.t1"; gene_id "Ledus.S2G158200"
Ledus.S2	AUGUSTUS	exon	11961262	11961975	.	-	.	transcript_id "Ledus.S2G158200.t1"; gene_id "Ledus.S2G158200"
Ledus.S2	AUGUSTUS	intron	11961976	11962112	.	-	.	transcript_id "Ledus.S2G158200.t1"; gene_id "Ledus.S2G158200"
Ledus.S2	AUGUSTUS	CDS	11962113	11962412	1	-	0	transcript_id "Ledus.S2G158200.t1"; gene_id "Ledus.S2G158200"
Ledus.S2	AUGUSTUS	exon	11962113	11962412	.	-	.	transcript_id "Ledus.S2G158200.t1"; gene_id "Ledus.S2G158200"
Ledus.S2	AUGUSTUS	start_codon	11962410	11962412	.	-	0	transcript_id "Ledus.S2G158200.t1"; gene_id "Ledus.S2G158200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8694.t1 is derived from g9724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1406881	1412042	.	+	.	Ledus.S3G017100
Ledus.S3	AUGUSTUS	transcript	1406881	1412042	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	start_codon	1406881	1406883	.	+	0	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1406881	1407214	0.59	+	0	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1406881	1407214	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	intron	1407215	1407730	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1407731	1409199	0.96	+	2	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1407731	1409199	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	intron	1409200	1409519	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1409520	1409553	0.94	+	0	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1409520	1409553	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	intron	1409554	1409670	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1409671	1409942	0.46	+	2	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1409671	1409942	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	intron	1409943	1410076	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1410077	1410155	1	+	0	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1410077	1410155	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	intron	1410156	1410287	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1410288	1410382	1	+	2	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1410288	1410382	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	intron	1410383	1410564	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1410565	1410669	1	+	0	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1410565	1410669	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	intron	1410670	1410819	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1410820	1410899	1	+	0	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1410820	1410899	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	intron	1410900	1411066	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1411067	1411157	1	+	1	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1411067	1411157	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	intron	1411158	1411243	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1411244	1411351	1	+	0	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1411244	1411351	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	intron	1411352	1411559	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1411560	1411646	1	+	0	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1411560	1411646	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	intron	1411647	1411731	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1411732	1411800	1	+	0	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1411732	1411800	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	intron	1411801	1411892	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	CDS	1411893	1412042	0.91	+	0	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	exon	1411893	1412042	.	+	.	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
Ledus.S3	AUGUSTUS	stop_codon	1412043	1412045	.	+	0	transcript_id "Ledus.S3G017100.t1"; gene_id "Ledus.S3G017100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5824.t1 is derived from g3266.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27105136	27109284	.	-	.	Ledus.S1G324500
Ledus.S1	AUGUSTUS	transcript	27105136	27109284	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	stop_codon	27105133	27105135	.	-	0	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	CDS	27105136	27106194	1	-	0	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	exon	27105136	27106194	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	intron	27106195	27106272	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	CDS	27106273	27106449	1	-	0	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	exon	27106273	27106449	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	intron	27106450	27106551	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	CDS	27106552	27106903	1	-	1	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	exon	27106552	27106903	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	intron	27106904	27107032	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	CDS	27107033	27107927	0.86	-	2	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	exon	27107033	27107927	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	intron	27107928	27108071	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	CDS	27108072	27108333	0.8	-	0	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	exon	27108072	27108333	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	intron	27108334	27108461	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	CDS	27108462	27108605	0.99	-	0	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	exon	27108462	27108605	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	intron	27108606	27108690	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	CDS	27108691	27109284	0.83	-	0	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	exon	27108691	27109284	.	-	.	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
Ledus.S1	AUGUSTUS	start_codon	27109282	27109284	.	-	0	transcript_id "Ledus.S1G324500.t1"; gene_id "Ledus.S1G324500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8268.t1 is derived from g12939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10330231	10331955	.	+	.	Ledus.S5G104600
Ledus.S5	AUGUSTUS	transcript	10330231	10331955	.	+	.	transcript_id "Ledus.S5G104600.t1"; gene_id "Ledus.S5G104600"
Ledus.S5	AUGUSTUS	start_codon	10330231	10330233	.	+	0	transcript_id "Ledus.S5G104600.t1"; gene_id "Ledus.S5G104600"
Ledus.S5	AUGUSTUS	CDS	10330231	10331955	1	+	0	transcript_id "Ledus.S5G104600.t1"; gene_id "Ledus.S5G104600"
Ledus.S5	AUGUSTUS	exon	10330231	10331955	.	+	.	transcript_id "Ledus.S5G104600.t1"; gene_id "Ledus.S5G104600"
Ledus.S5	AUGUSTUS	stop_codon	10331956	10331958	.	+	0	transcript_id "Ledus.S5G104600.t1"; gene_id "Ledus.S5G104600"
Ledus.S5	AUGUSTUS	transcript	10330312	10331955	.	+	.	transcript_id "Ledus.S5G104600.t2"; gene_id "Ledus.S5G104600"
Ledus.S5	AUGUSTUS	start_codon	10330312	10330314	.	+	0	transcript_id "Ledus.S5G104600.t2"; gene_id "Ledus.S5G104600"
Ledus.S5	AUGUSTUS	CDS	10330312	10331955	0.66	+	0	transcript_id "Ledus.S5G104600.t2"; gene_id "Ledus.S5G104600"
Ledus.S5	AUGUSTUS	exon	10330312	10331955	.	+	.	transcript_id "Ledus.S5G104600.t2"; gene_id "Ledus.S5G104600"
Ledus.S5	AUGUSTUS	stop_codon	10331956	10331958	.	+	0	transcript_id "Ledus.S5G104600.t2"; gene_id "Ledus.S5G104600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4896.t1 is derived from g2334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20564704	20565435	.	-	.	Ledus.S1G231700
Ledus.S1	AUGUSTUS	transcript	20564704	20565435	.	-	.	transcript_id "Ledus.S1G231700.t1"; gene_id "Ledus.S1G231700"
Ledus.S1	AUGUSTUS	stop_codon	20564701	20564703	.	-	0	transcript_id "Ledus.S1G231700.t1"; gene_id "Ledus.S1G231700"
Ledus.S1	AUGUSTUS	CDS	20564704	20565435	0.86	-	0	transcript_id "Ledus.S1G231700.t1"; gene_id "Ledus.S1G231700"
Ledus.S1	AUGUSTUS	exon	20564704	20565435	.	-	.	transcript_id "Ledus.S1G231700.t1"; gene_id "Ledus.S1G231700"
Ledus.S1	AUGUSTUS	start_codon	20565433	20565435	.	-	0	transcript_id "Ledus.S1G231700.t1"; gene_id "Ledus.S1G231700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4745.t1 is derived from g2183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19522185	19528666	.	-	.	Ledus.S1G216600
Ledus.S1	AUGUSTUS	transcript	19522185	19528666	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	stop_codon	19522182	19522184	.	-	0	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19522185	19522277	0.77	-	0	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19522185	19522277	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19522278	19522386	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19522387	19522613	0.91	-	2	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19522387	19522613	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19522614	19522719	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19522720	19522853	1	-	1	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19522720	19522853	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19522854	19522963	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19522964	19523094	1	-	0	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19522964	19523094	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19523095	19523211	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19523212	19523271	1	-	0	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19523212	19523271	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19523272	19523384	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19523385	19523525	0.9	-	0	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19523385	19523525	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19523526	19523780	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19523781	19524284	1	-	0	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19523781	19524284	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19524285	19524370	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19524371	19524551	1	-	1	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19524371	19524551	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19524552	19524692	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19524693	19524790	1	-	0	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19524693	19524790	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19524791	19524964	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19524965	19525066	1	-	0	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19524965	19525066	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19525067	19525381	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19525382	19525984	0.78	-	0	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19525382	19525984	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19525985	19526128	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19526129	19527089	0.94	-	1	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19526129	19527089	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19527090	19527490	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19527491	19527639	0.43	-	0	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19527491	19527639	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19527640	19527749	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19527750	19527861	0.33	-	1	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19527750	19527861	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19527862	19528219	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19528220	19528406	0.72	-	2	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19528220	19528406	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	intron	19528407	19528497	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	CDS	19528498	19528666	0.7	-	0	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	exon	19528498	19528666	.	-	.	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
Ledus.S1	AUGUSTUS	start_codon	19528664	19528666	.	-	0	transcript_id "Ledus.S1G216600.t1"; gene_id "Ledus.S1G216600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11687.t1 is derived from g5306.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6003753	6008304	.	-	.	Ledus.S4G084300
Ledus.S4	AUGUSTUS	transcript	6003753	6008304	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	stop_codon	6003750	6003752	.	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	CDS	6003753	6003782	1	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	exon	6003753	6003782	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	intron	6003783	6003882	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	CDS	6003883	6004008	1	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	exon	6003883	6004008	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	intron	6004009	6004084	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	CDS	6004085	6004183	1	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	exon	6004085	6004183	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	intron	6004184	6004282	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	CDS	6004283	6004462	1	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	exon	6004283	6004462	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	intron	6004463	6004547	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	CDS	6004548	6004829	0.99	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	exon	6004548	6004829	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	intron	6004830	6004948	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	CDS	6004949	6006814	1	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	exon	6004949	6006814	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	intron	6006815	6006911	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	CDS	6006912	6007118	1	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	exon	6006912	6007118	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	intron	6007119	6007203	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	CDS	6007204	6007332	1	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	exon	6007204	6007332	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	intron	6007333	6007413	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	CDS	6007414	6007746	1	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	exon	6007414	6007746	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	intron	6007747	6007831	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	CDS	6007832	6008053	1	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	exon	6007832	6008053	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	intron	6008054	6008136	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	CDS	6008137	6008304	0.42	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	exon	6008137	6008304	.	-	.	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
Ledus.S4	AUGUSTUS	start_codon	6008302	6008304	.	-	0	transcript_id "Ledus.S4G084300.t1"; gene_id "Ledus.S4G084300"
# This transcript jg11110.t2 is derived from g4728.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11111.t1 is derived from g4730.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1909477	1912313	.	+	.	Ledus.S4G026800
Ledus.S4	AUGUSTUS	transcript	1909477	1912313	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	start_codon	1909477	1909479	.	+	0	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	CDS	1909477	1909479	0.98	+	0	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	exon	1909477	1909479	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	intron	1909480	1909549	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	CDS	1909550	1909918	1	+	0	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	exon	1909550	1909918	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	intron	1909919	1910134	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	CDS	1910135	1910379	1	+	0	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	exon	1910135	1910379	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	intron	1910380	1910488	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	CDS	1910489	1910573	1	+	1	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	exon	1910489	1910573	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	intron	1910574	1910727	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	CDS	1910728	1910913	1	+	0	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	exon	1910728	1910913	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	intron	1910914	1911037	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	CDS	1911038	1911208	1	+	0	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	exon	1911038	1911208	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	intron	1911209	1911326	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	CDS	1911327	1911539	1	+	0	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	exon	1911327	1911539	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	intron	1911540	1911685	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	CDS	1911686	1911857	1	+	0	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	exon	1911686	1911857	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	intron	1911858	1911973	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	CDS	1911974	1912145	1	+	2	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	exon	1911974	1912145	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	intron	1912146	1912222	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	CDS	1912223	1912313	1	+	1	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	exon	1912223	1912313	.	+	.	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
Ledus.S4	AUGUSTUS	stop_codon	1912314	1912316	.	+	0	transcript_id "Ledus.S4G026800.t1"; gene_id "Ledus.S4G026800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5284.t1 is derived from g2723.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22850850	22851533	.	-	.	Ledus.S1G270500
Ledus.S1	AUGUSTUS	transcript	22850850	22851533	.	-	.	transcript_id "Ledus.S1G270500.t1"; gene_id "Ledus.S1G270500"
Ledus.S1	AUGUSTUS	stop_codon	22850847	22850849	.	-	0	transcript_id "Ledus.S1G270500.t1"; gene_id "Ledus.S1G270500"
Ledus.S1	AUGUSTUS	CDS	22850850	22850885	0.98	-	0	transcript_id "Ledus.S1G270500.t1"; gene_id "Ledus.S1G270500"
Ledus.S1	AUGUSTUS	exon	22850850	22850885	.	-	.	transcript_id "Ledus.S1G270500.t1"; gene_id "Ledus.S1G270500"
Ledus.S1	AUGUSTUS	intron	22850886	22850984	.	-	.	transcript_id "Ledus.S1G270500.t1"; gene_id "Ledus.S1G270500"
Ledus.S1	AUGUSTUS	CDS	22850985	22851357	0.98	-	1	transcript_id "Ledus.S1G270500.t1"; gene_id "Ledus.S1G270500"
Ledus.S1	AUGUSTUS	exon	22850985	22851357	.	-	.	transcript_id "Ledus.S1G270500.t1"; gene_id "Ledus.S1G270500"
Ledus.S1	AUGUSTUS	intron	22851358	22851435	.	-	.	transcript_id "Ledus.S1G270500.t1"; gene_id "Ledus.S1G270500"
Ledus.S1	AUGUSTUS	CDS	22851436	22851533	0.71	-	0	transcript_id "Ledus.S1G270500.t1"; gene_id "Ledus.S1G270500"
Ledus.S1	AUGUSTUS	exon	22851436	22851533	.	-	.	transcript_id "Ledus.S1G270500.t1"; gene_id "Ledus.S1G270500"
Ledus.S1	AUGUSTUS	start_codon	22851531	22851533	.	-	0	transcript_id "Ledus.S1G270500.t1"; gene_id "Ledus.S1G270500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4838.t1 is derived from g2276.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20076395	20078188	.	-	.	Ledus.S1G225900
Ledus.S1	AUGUSTUS	transcript	20076395	20078188	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	stop_codon	20076392	20076394	.	-	0	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	CDS	20076395	20076590	1	-	1	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	exon	20076395	20076590	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	intron	20076591	20076684	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	CDS	20076685	20076817	0.98	-	2	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	exon	20076685	20076817	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	intron	20076818	20076907	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	CDS	20076908	20077024	1	-	2	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	exon	20076908	20077024	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	intron	20077025	20077140	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	CDS	20077141	20077237	1	-	0	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	exon	20077141	20077237	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	intron	20077238	20077335	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	CDS	20077336	20077443	0.99	-	0	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	exon	20077336	20077443	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	intron	20077444	20077555	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	CDS	20077556	20077702	1	-	0	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	exon	20077556	20077702	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	intron	20077703	20077849	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	CDS	20077850	20077952	0.99	-	1	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	exon	20077850	20077952	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	intron	20077953	20078093	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	CDS	20078094	20078188	0.93	-	0	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	exon	20078094	20078188	.	-	.	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
Ledus.S1	AUGUSTUS	start_codon	20078186	20078188	.	-	0	transcript_id "Ledus.S1G225900.t1"; gene_id "Ledus.S1G225900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10895.t1 is derived from g4513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	349348	351819	.	+	.	Ledus.S4G005100
Ledus.S4	AUGUSTUS	transcript	349348	351819	.	+	.	transcript_id "Ledus.S4G005100.t1"; gene_id "Ledus.S4G005100"
Ledus.S4	AUGUSTUS	start_codon	349348	349350	.	+	0	transcript_id "Ledus.S4G005100.t1"; gene_id "Ledus.S4G005100"
Ledus.S4	AUGUSTUS	CDS	349348	351819	0.99	+	0	transcript_id "Ledus.S4G005100.t1"; gene_id "Ledus.S4G005100"
Ledus.S4	AUGUSTUS	exon	349348	351819	.	+	.	transcript_id "Ledus.S4G005100.t1"; gene_id "Ledus.S4G005100"
Ledus.S4	AUGUSTUS	stop_codon	351820	351822	.	+	0	transcript_id "Ledus.S4G005100.t1"; gene_id "Ledus.S4G005100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4344.t1 is derived from g1780.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16500209	16500730	.	+	.	Ledus.S1G176500
Ledus.S1	AUGUSTUS	transcript	16500209	16500730	.	+	.	transcript_id "Ledus.S1G176500.t1"; gene_id "Ledus.S1G176500"
Ledus.S1	AUGUSTUS	start_codon	16500209	16500211	.	+	0	transcript_id "Ledus.S1G176500.t1"; gene_id "Ledus.S1G176500"
Ledus.S1	AUGUSTUS	CDS	16500209	16500730	0.53	+	0	transcript_id "Ledus.S1G176500.t1"; gene_id "Ledus.S1G176500"
Ledus.S1	AUGUSTUS	exon	16500209	16500730	.	+	.	transcript_id "Ledus.S1G176500.t1"; gene_id "Ledus.S1G176500"
Ledus.S1	AUGUSTUS	stop_codon	16500731	16500733	.	+	0	transcript_id "Ledus.S1G176500.t1"; gene_id "Ledus.S1G176500"
# This transcript jg282.t2 is derived from g7143.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg283.t1 is derived from g7144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1393949	1398103	.	-	.	Ledus.S2G016500
Ledus.S2	AUGUSTUS	transcript	1393949	1398103	.	-	.	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	stop_codon	1393946	1393948	.	-	0	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	CDS	1393949	1394038	0.95	-	0	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	exon	1393949	1394038	.	-	.	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	intron	1394039	1394261	.	-	.	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	CDS	1394262	1394317	0.75	-	2	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	exon	1394262	1394317	.	-	.	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	intron	1394318	1394835	.	-	.	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	CDS	1394836	1397687	0.93	-	1	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	exon	1394836	1397687	.	-	.	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	intron	1397688	1397972	.	-	.	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	CDS	1397973	1398103	1	-	0	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	exon	1397973	1398103	.	-	.	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
Ledus.S2	AUGUSTUS	start_codon	1398101	1398103	.	-	0	transcript_id "Ledus.S2G016500.t1"; gene_id "Ledus.S2G016500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3375.t1 is derived from g810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7945460	7952551	.	-	.	Ledus.S1G079600
Ledus.S1	AUGUSTUS	transcript	7945460	7952551	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	stop_codon	7945457	7945459	.	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7945460	7945720	0.95	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7945460	7945720	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7945721	7945811	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7945812	7946000	0.82	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7945812	7946000	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7946001	7946118	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7946119	7946199	0.85	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7946119	7946199	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7946200	7946291	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7946292	7946435	1	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7946292	7946435	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7946436	7946590	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7946591	7946776	0.98	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7946591	7946776	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7946777	7946864	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7946865	7948061	0.73	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7946865	7948061	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7948062	7948190	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7948191	7948748	0.85	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7948191	7948748	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7948749	7948847	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7948848	7948946	0.98	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7948848	7948946	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7948947	7949120	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7949121	7949292	1	-	1	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7949121	7949292	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7949293	7949495	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7949496	7949637	0.9	-	2	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7949496	7949637	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7949638	7949732	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7949733	7949906	0.97	-	2	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7949733	7949906	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7949907	7949988	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7949989	7950121	1	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7949989	7950121	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7950122	7950200	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7950201	7950281	1	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7950201	7950281	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7950282	7950490	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7950491	7950559	1	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7950491	7950559	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7950560	7950653	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7950654	7950726	0.97	-	1	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7950654	7950726	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7950727	7950934	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7950935	7951019	0.67	-	2	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7950935	7951019	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7951020	7951117	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7951118	7951181	0.66	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7951118	7951181	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7951182	7951356	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7951357	7951449	1	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7951357	7951449	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7951450	7951770	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7951771	7951845	0.93	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7951771	7951845	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7951846	7951962	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7951963	7952055	0.92	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7951963	7952055	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7952056	7952129	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7952130	7952204	1	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7952130	7952204	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7952205	7952316	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7952317	7952418	0.64	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7952317	7952418	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	intron	7952419	7952491	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	CDS	7952492	7952551	0.59	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	exon	7952492	7952551	.	-	.	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
Ledus.S1	AUGUSTUS	start_codon	7952549	7952551	.	-	0	transcript_id "Ledus.S1G079600.t1"; gene_id "Ledus.S1G079600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1692.t1 is derived from g8553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11858850	11859182	.	-	.	Ledus.S2G157400
Ledus.S2	AUGUSTUS	transcript	11858850	11859182	.	-	.	transcript_id "Ledus.S2G157400.t1"; gene_id "Ledus.S2G157400"
Ledus.S2	AUGUSTUS	stop_codon	11858847	11858849	.	-	0	transcript_id "Ledus.S2G157400.t1"; gene_id "Ledus.S2G157400"
Ledus.S2	AUGUSTUS	CDS	11858850	11859182	0.95	-	0	transcript_id "Ledus.S2G157400.t1"; gene_id "Ledus.S2G157400"
Ledus.S2	AUGUSTUS	exon	11858850	11859182	.	-	.	transcript_id "Ledus.S2G157400.t1"; gene_id "Ledus.S2G157400"
Ledus.S2	AUGUSTUS	start_codon	11859180	11859182	.	-	0	transcript_id "Ledus.S2G157400.t1"; gene_id "Ledus.S2G157400"
# This transcript jg5920.t2 is derived from g3363.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5921.t1 is derived from g3364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27861521	27863029	.	-	.	Ledus.S1G334200
Ledus.S1	AUGUSTUS	transcript	27861521	27863029	.	-	.	transcript_id "Ledus.S1G334200.t1"; gene_id "Ledus.S1G334200"
Ledus.S1	AUGUSTUS	stop_codon	27861518	27861520	.	-	0	transcript_id "Ledus.S1G334200.t1"; gene_id "Ledus.S1G334200"
Ledus.S1	AUGUSTUS	CDS	27861521	27863029	1	-	0	transcript_id "Ledus.S1G334200.t1"; gene_id "Ledus.S1G334200"
Ledus.S1	AUGUSTUS	exon	27861521	27863029	.	-	.	transcript_id "Ledus.S1G334200.t1"; gene_id "Ledus.S1G334200"
Ledus.S1	AUGUSTUS	start_codon	27863027	27863029	.	-	0	transcript_id "Ledus.S1G334200.t1"; gene_id "Ledus.S1G334200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12555.t1 is derived from g6177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12859034	12859795	.	+	.	Ledus.S4G171100
Ledus.S4	AUGUSTUS	transcript	12859034	12859795	.	+	.	transcript_id "Ledus.S4G171100.t1"; gene_id "Ledus.S4G171100"
Ledus.S4	AUGUSTUS	start_codon	12859034	12859036	.	+	0	transcript_id "Ledus.S4G171100.t1"; gene_id "Ledus.S4G171100"
Ledus.S4	AUGUSTUS	CDS	12859034	12859795	0.63	+	0	transcript_id "Ledus.S4G171100.t1"; gene_id "Ledus.S4G171100"
Ledus.S4	AUGUSTUS	exon	12859034	12859795	.	+	.	transcript_id "Ledus.S4G171100.t1"; gene_id "Ledus.S4G171100"
Ledus.S4	AUGUSTUS	stop_codon	12859796	12859798	.	+	0	transcript_id "Ledus.S4G171100.t1"; gene_id "Ledus.S4G171100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10829.t1 is derived from g11861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	18090724	18094731	.	+	.	Ledus.S3G230600
Ledus.S3	AUGUSTUS	transcript	18090724	18094731	.	+	.	transcript_id "Ledus.S3G230600.t1"; gene_id "Ledus.S3G230600"
Ledus.S3	AUGUSTUS	start_codon	18090724	18090726	.	+	0	transcript_id "Ledus.S3G230600.t1"; gene_id "Ledus.S3G230600"
Ledus.S3	AUGUSTUS	CDS	18090724	18092326	0.65	+	0	transcript_id "Ledus.S3G230600.t1"; gene_id "Ledus.S3G230600"
Ledus.S3	AUGUSTUS	exon	18090724	18092326	.	+	.	transcript_id "Ledus.S3G230600.t1"; gene_id "Ledus.S3G230600"
Ledus.S3	AUGUSTUS	intron	18092327	18092418	.	+	.	transcript_id "Ledus.S3G230600.t1"; gene_id "Ledus.S3G230600"
Ledus.S3	AUGUSTUS	CDS	18092419	18093416	0.79	+	2	transcript_id "Ledus.S3G230600.t1"; gene_id "Ledus.S3G230600"
Ledus.S3	AUGUSTUS	exon	18092419	18093416	.	+	.	transcript_id "Ledus.S3G230600.t1"; gene_id "Ledus.S3G230600"
Ledus.S3	AUGUSTUS	intron	18093417	18093552	.	+	.	transcript_id "Ledus.S3G230600.t1"; gene_id "Ledus.S3G230600"
Ledus.S3	AUGUSTUS	CDS	18093553	18094731	0.23	+	0	transcript_id "Ledus.S3G230600.t1"; gene_id "Ledus.S3G230600"
Ledus.S3	AUGUSTUS	exon	18093553	18094731	.	+	.	transcript_id "Ledus.S3G230600.t1"; gene_id "Ledus.S3G230600"
Ledus.S3	AUGUSTUS	stop_codon	18094732	18094734	.	+	0	transcript_id "Ledus.S3G230600.t1"; gene_id "Ledus.S3G230600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12786.t1 is derived from g6408.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14472233	14472499	.	+	.	Ledus.S4G194200
Ledus.S4	AUGUSTUS	transcript	14472233	14472499	.	+	.	transcript_id "Ledus.S4G194200.t1"; gene_id "Ledus.S4G194200"
Ledus.S4	AUGUSTUS	start_codon	14472233	14472235	.	+	0	transcript_id "Ledus.S4G194200.t1"; gene_id "Ledus.S4G194200"
Ledus.S4	AUGUSTUS	CDS	14472233	14472499	0.95	+	0	transcript_id "Ledus.S4G194200.t1"; gene_id "Ledus.S4G194200"
Ledus.S4	AUGUSTUS	exon	14472233	14472499	.	+	.	transcript_id "Ledus.S4G194200.t1"; gene_id "Ledus.S4G194200"
Ledus.S4	AUGUSTUS	stop_codon	14472500	14472502	.	+	0	transcript_id "Ledus.S4G194200.t1"; gene_id "Ledus.S4G194200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2941.t1 is derived from g376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4753712	4757936	.	-	.	Ledus.S1G036200
Ledus.S1	AUGUSTUS	transcript	4753712	4757842	.	-	.	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	stop_codon	4753709	4753711	.	-	0	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	CDS	4753712	4756813	0.98	-	0	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	exon	4753712	4756813	.	-	.	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	intron	4756814	4756903	.	-	.	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	CDS	4756904	4756986	1	-	2	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	exon	4756904	4756986	.	-	.	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	intron	4756987	4757075	.	-	.	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	CDS	4757076	4757184	1	-	0	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	exon	4757076	4757184	.	-	.	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	intron	4757185	4757278	.	-	.	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	CDS	4757279	4757384	1	-	1	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	exon	4757279	4757384	.	-	.	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	intron	4757385	4757658	.	-	.	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	CDS	4757659	4757766	1	-	1	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	exon	4757659	4757766	.	-	.	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	intron	4757767	4757837	.	-	.	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	CDS	4757838	4757842	1	-	0	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	exon	4757838	4757842	.	-	.	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	start_codon	4757840	4757842	.	-	0	transcript_id "Ledus.S1G036200.t1"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	transcript	4753712	4757936	.	-	.	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	stop_codon	4753709	4753711	.	-	0	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	CDS	4753712	4756813	0.98	-	0	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	exon	4753712	4756813	.	-	.	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	intron	4756814	4756903	.	-	.	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	CDS	4756904	4756986	1	-	2	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	exon	4756904	4756986	.	-	.	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	intron	4756987	4757075	.	-	.	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	CDS	4757076	4757184	0.85	-	0	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	exon	4757076	4757184	.	-	.	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	intron	4757185	4757278	.	-	.	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	CDS	4757279	4757384	0.84	-	1	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	exon	4757279	4757384	.	-	.	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	intron	4757385	4757650	.	-	.	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	CDS	4757651	4757661	0.79	-	0	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	exon	4757651	4757661	.	-	.	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	intron	4757662	4757837	.	-	.	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	CDS	4757838	4757936	0.53	-	0	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	exon	4757838	4757936	.	-	.	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
Ledus.S1	AUGUSTUS	start_codon	4757934	4757936	.	-	0	transcript_id "Ledus.S1G036200.t2"; gene_id "Ledus.S1G036200"
# This transcript jg11840.t2 is derived from g5459.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11841.t1 is derived from g5460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7224290	7227980	.	-	.	Ledus.S4G099700
Ledus.S4	AUGUSTUS	transcript	7224290	7227980	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	stop_codon	7224287	7224289	.	-	0	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	CDS	7224290	7224458	0.99	-	1	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	exon	7224290	7224458	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	intron	7224459	7224659	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	CDS	7224660	7224798	0.77	-	2	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	exon	7224660	7224798	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	intron	7224799	7224990	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	CDS	7224991	7225013	0.96	-	1	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	exon	7224991	7225013	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	intron	7225014	7225142	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	CDS	7225143	7225752	0.99	-	2	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	exon	7225143	7225752	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	intron	7225753	7225833	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	CDS	7225834	7225879	1	-	0	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	exon	7225834	7225879	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	intron	7225880	7225982	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	CDS	7225983	7227211	0.81	-	2	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	exon	7225983	7227211	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	intron	7227212	7227328	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	CDS	7227329	7227980	1	-	0	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	exon	7227329	7227980	.	-	.	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
Ledus.S4	AUGUSTUS	start_codon	7227978	7227980	.	-	0	transcript_id "Ledus.S4G099700.t1"; gene_id "Ledus.S4G099700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4399.t1 is derived from g1835.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16804251	16813728	.	-	.	Ledus.S1G182000
Ledus.S1	AUGUSTUS	transcript	16804251	16813728	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	stop_codon	16804248	16804250	.	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16804251	16804362	1	-	1	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16804251	16804362	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16804363	16804494	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16804495	16804715	0.98	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16804495	16804715	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16804716	16804832	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16804833	16805207	0.58	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16804833	16805207	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16805208	16805346	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16805347	16805386	0.99	-	1	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16805347	16805386	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16805387	16805585	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16805586	16805725	1	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16805586	16805725	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16805726	16805923	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16805924	16806236	0.99	-	1	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16805924	16806236	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16806237	16806379	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16806380	16806522	0.99	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16806380	16806522	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16806523	16806684	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16806685	16806831	0.64	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16806685	16806831	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16806832	16806998	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16806999	16807127	1	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16806999	16807127	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16807128	16807416	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16807417	16807695	0.92	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16807417	16807695	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16807696	16807797	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16807798	16808094	0.94	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16807798	16808094	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16808095	16808177	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16808178	16808932	0.65	-	2	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16808178	16808932	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16808933	16809121	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16809122	16810243	0.64	-	2	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16809122	16810243	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16810244	16810350	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16810351	16811290	0.99	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16810351	16811290	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16811291	16811384	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16811385	16811496	1	-	1	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16811385	16811496	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16811497	16811863	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16811864	16812024	0.82	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16811864	16812024	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16812025	16812396	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16812397	16812477	0.85	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16812397	16812477	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	intron	16812478	16813425	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	CDS	16813426	16813728	0.86	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	exon	16813426	16813728	.	-	.	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
Ledus.S1	AUGUSTUS	start_codon	16813726	16813728	.	-	0	transcript_id "Ledus.S1G182000.t1"; gene_id "Ledus.S1G182000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8088.t1 is derived from g12759.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9102183	9105108	.	+	.	Ledus.S5G086600
Ledus.S5	AUGUSTUS	transcript	9102183	9105108	.	+	.	transcript_id "Ledus.S5G086600.t1"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	start_codon	9102183	9102185	.	+	0	transcript_id "Ledus.S5G086600.t1"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	CDS	9102183	9102280	0.99	+	0	transcript_id "Ledus.S5G086600.t1"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	exon	9102183	9102280	.	+	.	transcript_id "Ledus.S5G086600.t1"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	intron	9102281	9102372	.	+	.	transcript_id "Ledus.S5G086600.t1"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	CDS	9102373	9102395	0.99	+	1	transcript_id "Ledus.S5G086600.t1"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	exon	9102373	9102395	.	+	.	transcript_id "Ledus.S5G086600.t1"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	intron	9102396	9102544	.	+	.	transcript_id "Ledus.S5G086600.t1"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	CDS	9102545	9105108	0.98	+	2	transcript_id "Ledus.S5G086600.t1"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	exon	9102545	9105108	.	+	.	transcript_id "Ledus.S5G086600.t1"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	stop_codon	9105109	9105111	.	+	0	transcript_id "Ledus.S5G086600.t1"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	transcript	9102217	9105108	.	+	.	transcript_id "Ledus.S5G086600.t2"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	start_codon	9102217	9102219	.	+	0	transcript_id "Ledus.S5G086600.t2"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	CDS	9102217	9102280	0.92	+	0	transcript_id "Ledus.S5G086600.t2"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	exon	9102217	9102280	.	+	.	transcript_id "Ledus.S5G086600.t2"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	intron	9102281	9102372	.	+	.	transcript_id "Ledus.S5G086600.t2"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	CDS	9102373	9102395	0.92	+	2	transcript_id "Ledus.S5G086600.t2"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	exon	9102373	9102395	.	+	.	transcript_id "Ledus.S5G086600.t2"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	intron	9102396	9102555	.	+	.	transcript_id "Ledus.S5G086600.t2"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	CDS	9102556	9105108	0.92	+	0	transcript_id "Ledus.S5G086600.t2"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	exon	9102556	9105108	.	+	.	transcript_id "Ledus.S5G086600.t2"; gene_id "Ledus.S5G086600"
Ledus.S5	AUGUSTUS	stop_codon	9105109	9105111	.	+	0	transcript_id "Ledus.S5G086600.t2"; gene_id "Ledus.S5G086600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13090.t1 is derived from g6900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5418267	5419317	.	-	.	Ledus.S6G015200
Ledus.S6	AUGUSTUS	transcript	5418267	5419317	.	-	.	transcript_id "Ledus.S6G015200.t1"; gene_id "Ledus.S6G015200"
Ledus.S6	AUGUSTUS	stop_codon	5418264	5418266	.	-	0	transcript_id "Ledus.S6G015200.t1"; gene_id "Ledus.S6G015200"
Ledus.S6	AUGUSTUS	CDS	5418267	5419185	0.58	-	1	transcript_id "Ledus.S6G015200.t1"; gene_id "Ledus.S6G015200"
Ledus.S6	AUGUSTUS	exon	5418267	5419185	.	-	.	transcript_id "Ledus.S6G015200.t1"; gene_id "Ledus.S6G015200"
Ledus.S6	AUGUSTUS	intron	5419186	5419312	.	-	.	transcript_id "Ledus.S6G015200.t1"; gene_id "Ledus.S6G015200"
Ledus.S6	AUGUSTUS	CDS	5419313	5419317	0.86	-	0	transcript_id "Ledus.S6G015200.t1"; gene_id "Ledus.S6G015200"
Ledus.S6	AUGUSTUS	exon	5419313	5419317	.	-	.	transcript_id "Ledus.S6G015200.t1"; gene_id "Ledus.S6G015200"
Ledus.S6	AUGUSTUS	start_codon	5419315	5419317	.	-	0	transcript_id "Ledus.S6G015200.t1"; gene_id "Ledus.S6G015200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4356.t1 is derived from g1792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16559242	16561067	.	+	.	Ledus.S1G177700
Ledus.S1	AUGUSTUS	transcript	16559242	16561067	.	+	.	transcript_id "Ledus.S1G177700.t1"; gene_id "Ledus.S1G177700"
Ledus.S1	AUGUSTUS	start_codon	16559242	16559244	.	+	0	transcript_id "Ledus.S1G177700.t1"; gene_id "Ledus.S1G177700"
Ledus.S1	AUGUSTUS	CDS	16559242	16560429	0.65	+	0	transcript_id "Ledus.S1G177700.t1"; gene_id "Ledus.S1G177700"
Ledus.S1	AUGUSTUS	exon	16559242	16560429	.	+	.	transcript_id "Ledus.S1G177700.t1"; gene_id "Ledus.S1G177700"
Ledus.S1	AUGUSTUS	intron	16560430	16560527	.	+	.	transcript_id "Ledus.S1G177700.t1"; gene_id "Ledus.S1G177700"
Ledus.S1	AUGUSTUS	CDS	16560528	16561067	0.62	+	0	transcript_id "Ledus.S1G177700.t1"; gene_id "Ledus.S1G177700"
Ledus.S1	AUGUSTUS	exon	16560528	16561067	.	+	.	transcript_id "Ledus.S1G177700.t1"; gene_id "Ledus.S1G177700"
Ledus.S1	AUGUSTUS	stop_codon	16561068	16561070	.	+	0	transcript_id "Ledus.S1G177700.t1"; gene_id "Ledus.S1G177700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8891.t1 is derived from g9921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2855792	2860519	.	-	.	Ledus.S3G036800
Ledus.S3	AUGUSTUS	transcript	2855792	2860519	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	stop_codon	2855789	2855791	.	-	0	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2855792	2855974	0.99	-	0	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2855792	2855974	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2855975	2856058	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2856059	2856122	0.56	-	1	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2856059	2856122	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2856123	2856227	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2856228	2856350	1	-	1	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2856228	2856350	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2856351	2856488	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2856489	2856663	1	-	2	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2856489	2856663	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2856664	2856789	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2856790	2856904	1	-	0	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2856790	2856904	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2856905	2857027	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2857028	2857080	1	-	2	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2857028	2857080	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2857081	2857197	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2857198	2857272	0.97	-	2	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2857198	2857272	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2857273	2857395	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2857396	2857713	0.99	-	2	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2857396	2857713	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2857714	2857870	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2857871	2858047	1	-	2	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2857871	2858047	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2858048	2858203	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2858204	2858355	1	-	1	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2858204	2858355	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2858356	2858492	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2858493	2858649	1	-	2	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2858493	2858649	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2858650	2858794	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2858795	2858860	1	-	2	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2858795	2858860	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2858861	2859029	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2859030	2859109	1	-	1	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2859030	2859109	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2859110	2859198	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2859199	2859347	1	-	0	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2859199	2859347	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2859348	2859456	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2859457	2859538	0.76	-	1	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2859457	2859538	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2859539	2859857	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2859858	2859960	1	-	2	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2859858	2859960	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	intron	2859961	2860353	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	CDS	2860354	2860519	0.24	-	0	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	exon	2860354	2860519	.	-	.	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
Ledus.S3	AUGUSTUS	start_codon	2860517	2860519	.	-	0	transcript_id "Ledus.S3G036800.t1"; gene_id "Ledus.S3G036800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11954.t1 is derived from g5573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7997354	8004694	.	-	.	Ledus.S4G111000
Ledus.S4	AUGUSTUS	transcript	7997354	8004694	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	stop_codon	7997351	7997353	.	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	7997354	7997945	0.73	-	1	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	7997354	7997945	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	7997946	7998026	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	7998027	7998128	1	-	1	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	7998027	7998128	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	7998129	7998224	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	7998225	7998385	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	7998225	7998385	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	7998386	7998468	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	7998469	7998579	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	7998469	7998579	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	7998580	7998685	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	7998686	7998817	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	7998686	7998817	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	7998818	7998905	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	7998906	7999020	1	-	1	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	7998906	7999020	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	7999021	7999138	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	7999139	7999368	0.99	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	7999139	7999368	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	7999369	7999578	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	7999579	7999671	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	7999579	7999671	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	7999672	7999863	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	7999864	7999957	1	-	1	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	7999864	7999957	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	7999958	8000102	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8000103	8000180	1	-	1	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8000103	8000180	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8000181	8000325	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8000326	8000396	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8000326	8000396	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8000397	8000634	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8000635	8000730	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8000635	8000730	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8000731	8000841	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8000842	8000919	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8000842	8000919	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8000920	8001011	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8001012	8001080	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8001012	8001080	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8001081	8001204	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8001205	8001272	1	-	2	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8001205	8001272	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8001273	8001505	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8001506	8001583	1	-	2	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8001506	8001583	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8001584	8001749	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8001750	8001849	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8001750	8001849	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8001850	8002148	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8002149	8002208	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8002149	8002208	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8002209	8002687	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8002688	8002752	1	-	2	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8002688	8002752	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8002753	8003382	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8003383	8003448	0.86	-	2	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8003383	8003448	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8003449	8003555	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8003556	8003599	1	-	1	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8003556	8003599	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8003600	8003691	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8003692	8003776	1	-	2	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8003692	8003776	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8003777	8003943	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8003944	8004043	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8003944	8004043	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8004044	8004159	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8004160	8004240	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8004160	8004240	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8004241	8004465	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8004466	8004483	1	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8004466	8004483	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	intron	8004484	8004565	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	CDS	8004566	8004694	0.81	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	exon	8004566	8004694	.	-	.	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
Ledus.S4	AUGUSTUS	start_codon	8004692	8004694	.	-	0	transcript_id "Ledus.S4G111000.t1"; gene_id "Ledus.S4G111000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3983.t1 is derived from g1419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13911596	13913437	.	+	.	Ledus.S1G140400
Ledus.S1	AUGUSTUS	transcript	13911596	13913437	.	+	.	transcript_id "Ledus.S1G140400.t1"; gene_id "Ledus.S1G140400"
Ledus.S1	AUGUSTUS	start_codon	13911596	13911598	.	+	0	transcript_id "Ledus.S1G140400.t1"; gene_id "Ledus.S1G140400"
Ledus.S1	AUGUSTUS	CDS	13911596	13913437	1	+	0	transcript_id "Ledus.S1G140400.t1"; gene_id "Ledus.S1G140400"
Ledus.S1	AUGUSTUS	exon	13911596	13913437	.	+	.	transcript_id "Ledus.S1G140400.t1"; gene_id "Ledus.S1G140400"
Ledus.S1	AUGUSTUS	stop_codon	13913438	13913440	.	+	0	transcript_id "Ledus.S1G140400.t1"; gene_id "Ledus.S1G140400"
Ledus.S1	AUGUSTUS	transcript	13912193	13913437	.	+	.	transcript_id "Ledus.S1G140400.t2"; gene_id "Ledus.S1G140400"
Ledus.S1	AUGUSTUS	start_codon	13912193	13912195	.	+	0	transcript_id "Ledus.S1G140400.t2"; gene_id "Ledus.S1G140400"
Ledus.S1	AUGUSTUS	CDS	13912193	13913437	0.91	+	0	transcript_id "Ledus.S1G140400.t2"; gene_id "Ledus.S1G140400"
Ledus.S1	AUGUSTUS	exon	13912193	13913437	.	+	.	transcript_id "Ledus.S1G140400.t2"; gene_id "Ledus.S1G140400"
Ledus.S1	AUGUSTUS	stop_codon	13913438	13913440	.	+	0	transcript_id "Ledus.S1G140400.t2"; gene_id "Ledus.S1G140400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5104.t1 is derived from g2543.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21749010	21752407	.	-	.	Ledus.S1G252500
Ledus.S1	AUGUSTUS	transcript	21749010	21752407	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	stop_codon	21749007	21749009	.	-	0	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21749010	21749207	0.95	-	0	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21749010	21749207	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21749208	21749345	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21749346	21749377	0.95	-	2	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21749346	21749377	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21749378	21749460	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21749461	21749533	0.87	-	0	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21749461	21749533	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21749534	21749677	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21749678	21749899	1	-	0	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21749678	21749899	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21749900	21750029	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21750030	21750143	0.99	-	0	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21750030	21750143	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21750144	21750268	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21750269	21750450	0.97	-	2	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21750269	21750450	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21750451	21750701	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21750702	21750996	0.99	-	0	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21750702	21750996	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21750997	21751092	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21751093	21751295	1	-	2	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21751093	21751295	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21751296	21751430	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21751431	21751528	1	-	1	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21751431	21751528	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21751529	21751685	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21751686	21751728	1	-	2	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21751686	21751728	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21751729	21751807	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21751808	21752133	1	-	1	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21751808	21752133	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21752134	21752312	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21752313	21752407	1	-	0	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21752313	21752407	.	-	.	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	start_codon	21752405	21752407	.	-	0	transcript_id "Ledus.S1G252500.t1"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	transcript	21749010	21752407	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	stop_codon	21749007	21749009	.	-	0	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21749010	21749207	0.95	-	0	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21749010	21749207	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21749208	21749345	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21749346	21749377	0.95	-	2	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21749346	21749377	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21749378	21749460	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21749461	21749533	0.9	-	0	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21749461	21749533	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21749534	21749677	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21749678	21749899	1	-	0	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21749678	21749899	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21749900	21750029	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21750030	21750143	0.98	-	0	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21750030	21750143	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21750144	21750268	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21750269	21750450	0.99	-	2	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21750269	21750450	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21750451	21750701	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21750702	21750996	1	-	0	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21750702	21750996	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21750997	21751092	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21751093	21751295	1	-	2	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21751093	21751295	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21751296	21751430	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21751431	21751528	0.99	-	1	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21751431	21751528	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21751529	21751636	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21751637	21751703	0.5	-	2	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21751637	21751703	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21751704	21751807	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21751808	21752133	0.92	-	1	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21751808	21752133	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	intron	21752134	21752312	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	CDS	21752313	21752407	1	-	0	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	exon	21752313	21752407	.	-	.	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
Ledus.S1	AUGUSTUS	start_codon	21752405	21752407	.	-	0	transcript_id "Ledus.S1G252500.t2"; gene_id "Ledus.S1G252500"
# This transcript jg6907.t2 is derived from g4351.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6908.t1 is derived from g4352.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35122446	35123708	.	-	.	Ledus.S1G432900
Ledus.S1	AUGUSTUS	transcript	35122446	35123708	.	-	.	transcript_id "Ledus.S1G432900.t1"; gene_id "Ledus.S1G432900"
Ledus.S1	AUGUSTUS	stop_codon	35122443	35122445	.	-	0	transcript_id "Ledus.S1G432900.t1"; gene_id "Ledus.S1G432900"
Ledus.S1	AUGUSTUS	CDS	35122446	35122721	1	-	0	transcript_id "Ledus.S1G432900.t1"; gene_id "Ledus.S1G432900"
Ledus.S1	AUGUSTUS	exon	35122446	35122721	.	-	.	transcript_id "Ledus.S1G432900.t1"; gene_id "Ledus.S1G432900"
Ledus.S1	AUGUSTUS	intron	35122722	35122794	.	-	.	transcript_id "Ledus.S1G432900.t1"; gene_id "Ledus.S1G432900"
Ledus.S1	AUGUSTUS	CDS	35122795	35123169	1	-	0	transcript_id "Ledus.S1G432900.t1"; gene_id "Ledus.S1G432900"
Ledus.S1	AUGUSTUS	exon	35122795	35123169	.	-	.	transcript_id "Ledus.S1G432900.t1"; gene_id "Ledus.S1G432900"
Ledus.S1	AUGUSTUS	intron	35123170	35123264	.	-	.	transcript_id "Ledus.S1G432900.t1"; gene_id "Ledus.S1G432900"
Ledus.S1	AUGUSTUS	CDS	35123265	35123708	1	-	0	transcript_id "Ledus.S1G432900.t1"; gene_id "Ledus.S1G432900"
Ledus.S1	AUGUSTUS	exon	35123265	35123708	.	-	.	transcript_id "Ledus.S1G432900.t1"; gene_id "Ledus.S1G432900"
Ledus.S1	AUGUSTUS	start_codon	35123706	35123708	.	-	0	transcript_id "Ledus.S1G432900.t1"; gene_id "Ledus.S1G432900"
# This transcript jg5033.t2 is derived from g2472.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5034.t1 is derived from g2473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21227030	21229407	.	-	.	Ledus.S1G245500
Ledus.S1	AUGUSTUS	transcript	21227030	21229407	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	stop_codon	21227027	21227029	.	-	0	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	CDS	21227030	21227098	1	-	0	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	exon	21227030	21227098	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	intron	21227099	21227197	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	CDS	21227198	21227284	1	-	0	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	exon	21227198	21227284	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	intron	21227285	21227372	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	CDS	21227373	21227558	1	-	0	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	exon	21227373	21227558	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	intron	21227559	21227657	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	CDS	21227658	21227752	1	-	2	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	exon	21227658	21227752	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	intron	21227753	21227831	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	CDS	21227832	21227937	1	-	0	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	exon	21227832	21227937	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	intron	21227938	21228023	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	CDS	21228024	21228098	1	-	0	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	exon	21228024	21228098	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	intron	21228099	21228206	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	CDS	21228207	21228338	1	-	0	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	exon	21228207	21228338	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	intron	21228339	21228403	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	CDS	21228404	21228583	1	-	0	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	exon	21228404	21228583	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	intron	21228584	21228662	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	CDS	21228663	21228859	1	-	2	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	exon	21228663	21228859	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	intron	21228860	21229031	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	CDS	21229032	21229407	0.71	-	0	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	exon	21229032	21229407	.	-	.	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
Ledus.S1	AUGUSTUS	start_codon	21229405	21229407	.	-	0	transcript_id "Ledus.S1G245500.t1"; gene_id "Ledus.S1G245500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3766.t1 is derived from g1202.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11792925	11793456	.	-	.	Ledus.S1G118700
Ledus.S1	AUGUSTUS	transcript	11792925	11793456	.	-	.	transcript_id "Ledus.S1G118700.t1"; gene_id "Ledus.S1G118700"
Ledus.S1	AUGUSTUS	stop_codon	11792922	11792924	.	-	0	transcript_id "Ledus.S1G118700.t1"; gene_id "Ledus.S1G118700"
Ledus.S1	AUGUSTUS	CDS	11792925	11793129	0.59	-	1	transcript_id "Ledus.S1G118700.t1"; gene_id "Ledus.S1G118700"
Ledus.S1	AUGUSTUS	exon	11792925	11793129	.	-	.	transcript_id "Ledus.S1G118700.t1"; gene_id "Ledus.S1G118700"
Ledus.S1	AUGUSTUS	intron	11793130	11793340	.	-	.	transcript_id "Ledus.S1G118700.t1"; gene_id "Ledus.S1G118700"
Ledus.S1	AUGUSTUS	CDS	11793341	11793456	0.62	-	0	transcript_id "Ledus.S1G118700.t1"; gene_id "Ledus.S1G118700"
Ledus.S1	AUGUSTUS	exon	11793341	11793456	.	-	.	transcript_id "Ledus.S1G118700.t1"; gene_id "Ledus.S1G118700"
Ledus.S1	AUGUSTUS	start_codon	11793454	11793456	.	-	0	transcript_id "Ledus.S1G118700.t1"; gene_id "Ledus.S1G118700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4774.t1 is derived from g2212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19686064	19687983	.	-	.	Ledus.S1G219500
Ledus.S1	AUGUSTUS	transcript	19686064	19687983	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	stop_codon	19686061	19686063	.	-	0	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	CDS	19686064	19686297	0.73	-	0	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	exon	19686064	19686297	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	intron	19686298	19686381	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	CDS	19686382	19686522	1	-	0	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	exon	19686382	19686522	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	intron	19686523	19686607	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	CDS	19686608	19686808	1	-	0	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	exon	19686608	19686808	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	intron	19686809	19686890	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	CDS	19686891	19686965	1	-	0	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	exon	19686891	19686965	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	intron	19686966	19687066	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	CDS	19687067	19687237	1	-	0	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	exon	19687067	19687237	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	intron	19687238	19687317	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	CDS	19687318	19687467	1	-	0	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	exon	19687318	19687467	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	intron	19687468	19687542	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	CDS	19687543	19687743	1	-	0	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	exon	19687543	19687743	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	intron	19687744	19687824	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	CDS	19687825	19687983	0.87	-	0	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	exon	19687825	19687983	.	-	.	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
Ledus.S1	AUGUSTUS	start_codon	19687981	19687983	.	-	0	transcript_id "Ledus.S1G219500.t1"; gene_id "Ledus.S1G219500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7090.t1 is derived from g6621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1495378	1499513	.	-	.	Ledus.C7G015100
Ledus.C7	AUGUSTUS	transcript	1495378	1499513	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	stop_codon	1495375	1495377	.	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1495378	1495499	0.72	-	2	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1495378	1495499	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1495500	1495659	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1495660	1495972	0.48	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1495660	1495972	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1495973	1496187	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1496188	1496321	1	-	2	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1496188	1496321	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1496322	1496433	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1496434	1496512	1	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1496434	1496512	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1496513	1496671	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1496672	1496830	1	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1496672	1496830	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1496831	1496991	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1496992	1497072	1	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1496992	1497072	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1497073	1497243	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1497244	1497324	1	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1497244	1497324	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1497325	1497526	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1497527	1497592	1	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1497527	1497592	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1497593	1497686	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1497687	1497752	1	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1497687	1497752	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1497753	1497960	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1497961	1498011	1	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1497961	1498011	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1498012	1498149	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1498150	1498242	1	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1498150	1498242	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1498243	1498324	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1498325	1498428	1	-	2	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1498325	1498428	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1498429	1498512	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1498513	1498654	1	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1498513	1498654	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1498655	1498763	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1498764	1498861	0.99	-	2	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1498764	1498861	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1498862	1499050	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1499051	1499120	1	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1499051	1499120	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	intron	1499121	1499414	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	CDS	1499415	1499513	0.62	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	exon	1499415	1499513	.	-	.	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
Ledus.C7	AUGUSTUS	start_codon	1499511	1499513	.	-	0	transcript_id "Ledus.C7G015100.t1"; gene_id "Ledus.C7G015100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4697.t1 is derived from g2135.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19109034	19109429	.	+	.	Ledus.S1G211800
Ledus.S1	AUGUSTUS	transcript	19109034	19109429	.	+	.	transcript_id "Ledus.S1G211800.t1"; gene_id "Ledus.S1G211800"
Ledus.S1	AUGUSTUS	start_codon	19109034	19109036	.	+	0	transcript_id "Ledus.S1G211800.t1"; gene_id "Ledus.S1G211800"
Ledus.S1	AUGUSTUS	CDS	19109034	19109429	0.98	+	0	transcript_id "Ledus.S1G211800.t1"; gene_id "Ledus.S1G211800"
Ledus.S1	AUGUSTUS	exon	19109034	19109429	.	+	.	transcript_id "Ledus.S1G211800.t1"; gene_id "Ledus.S1G211800"
Ledus.S1	AUGUSTUS	stop_codon	19109430	19109432	.	+	0	transcript_id "Ledus.S1G211800.t1"; gene_id "Ledus.S1G211800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5522.t1 is derived from g2961.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24855089	24861684	.	-	.	Ledus.S1G294300
Ledus.S1	AUGUSTUS	transcript	24855089	24861684	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	stop_codon	24855086	24855088	.	-	0	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24855089	24855119	0.99	-	1	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24855089	24855119	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24855120	24855202	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24855203	24855299	0.99	-	2	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24855203	24855299	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24855300	24855390	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24855391	24855468	1	-	2	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24855391	24855468	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24855469	24856144	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24856145	24856271	0.94	-	0	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24856145	24856271	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24856272	24856656	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24856657	24856806	0.98	-	0	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24856657	24856806	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24856807	24856893	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24856894	24857026	1	-	1	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24856894	24857026	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24857027	24857174	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24857175	24857364	1	-	2	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24857175	24857364	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24857365	24857452	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24857453	24857521	1	-	2	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24857453	24857521	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24857522	24857607	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24857608	24857734	1	-	0	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24857608	24857734	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24857735	24857867	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24857868	24858070	1	-	2	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24857868	24858070	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24858071	24858251	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24858252	24858445	1	-	1	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24858252	24858445	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24858446	24858695	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24858696	24858767	1	-	1	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24858696	24858767	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24858768	24858865	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24858866	24858937	1	-	1	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24858866	24858937	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24858938	24859316	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24859317	24859382	1	-	1	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24859317	24859382	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24859383	24859604	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24859605	24859673	1	-	1	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24859605	24859673	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24859674	24859858	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24859859	24859939	1	-	1	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24859859	24859939	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24859940	24860048	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24860049	24860181	1	-	2	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24860049	24860181	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24860182	24860274	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24860275	24860744	0.98	-	1	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24860275	24860744	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24860745	24860944	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24860945	24861464	0.94	-	2	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24860945	24861464	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	intron	24861465	24861563	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	CDS	24861564	24861684	1	-	0	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	exon	24861564	24861684	.	-	.	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
Ledus.S1	AUGUSTUS	start_codon	24861682	24861684	.	-	0	transcript_id "Ledus.S1G294300.t1"; gene_id "Ledus.S1G294300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12852.t1 is derived from g11886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	226121	227292	.	+	.	Ledus.C11G001600
Ledus.C11	AUGUSTUS	transcript	226121	227292	.	+	.	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	start_codon	226121	226123	.	+	0	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	CDS	226121	226147	0.69	+	0	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	exon	226121	226147	.	+	.	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	intron	226148	226270	.	+	.	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	CDS	226271	226409	0.98	+	0	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	exon	226271	226409	.	+	.	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	intron	226410	226693	.	+	.	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	CDS	226694	226779	0.39	+	2	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	exon	226694	226779	.	+	.	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	intron	226780	227008	.	+	.	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	CDS	227009	227101	0.34	+	0	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	exon	227009	227101	.	+	.	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	intron	227102	227262	.	+	.	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	CDS	227263	227292	0.59	+	0	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	exon	227263	227292	.	+	.	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
Ledus.C11	AUGUSTUS	stop_codon	227293	227295	.	+	0	transcript_id "Ledus.C11G001600.t1"; gene_id "Ledus.C11G001600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12202.t1 is derived from g5821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10276281	10276544	.	+	.	Ledus.S4G135800
Ledus.S4	AUGUSTUS	transcript	10276281	10276544	.	+	.	transcript_id "Ledus.S4G135800.t1"; gene_id "Ledus.S4G135800"
Ledus.S4	AUGUSTUS	start_codon	10276281	10276283	.	+	0	transcript_id "Ledus.S4G135800.t1"; gene_id "Ledus.S4G135800"
Ledus.S4	AUGUSTUS	CDS	10276281	10276544	0.75	+	0	transcript_id "Ledus.S4G135800.t1"; gene_id "Ledus.S4G135800"
Ledus.S4	AUGUSTUS	exon	10276281	10276544	.	+	.	transcript_id "Ledus.S4G135800.t1"; gene_id "Ledus.S4G135800"
Ledus.S4	AUGUSTUS	stop_codon	10276545	10276547	.	+	0	transcript_id "Ledus.S4G135800.t1"; gene_id "Ledus.S4G135800"
# This transcript jg3441.t2 is derived from g876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3442.t1 is derived from g877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8387403	8391979	.	-	.	Ledus.S1G086300
Ledus.S1	AUGUSTUS	transcript	8387403	8391979	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	stop_codon	8387400	8387402	.	-	0	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8387403	8387578	0.75	-	2	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8387403	8387578	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8387579	8387806	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8387807	8388062	0.45	-	0	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8387807	8388062	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8388063	8388156	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8388157	8388233	1	-	2	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8388157	8388233	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8388234	8388369	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8388370	8388461	1	-	1	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8388370	8388461	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8388462	8388554	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8388555	8388661	1	-	0	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8388555	8388661	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8388662	8388749	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8388750	8388835	1	-	2	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8388750	8388835	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8388836	8388988	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8388989	8389105	1	-	2	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8388989	8389105	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8389106	8389183	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8389184	8389282	1	-	2	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8389184	8389282	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8389283	8389408	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8389409	8389488	1	-	1	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8389409	8389488	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8389489	8389659	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8389660	8389754	1	-	0	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8389660	8389754	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8389755	8389833	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8389834	8389883	1	-	2	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8389834	8389883	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8389884	8390210	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8390211	8390289	1	-	0	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8390211	8390289	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8390290	8390435	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8390436	8390501	1	-	0	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8390436	8390501	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8390502	8390661	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8390662	8390731	1	-	1	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8390662	8390731	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8390732	8390898	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8390899	8390929	1	-	2	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8390899	8390929	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8390930	8391029	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8391030	8391120	1	-	0	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8391030	8391120	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8391121	8391252	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8391253	8391315	1	-	0	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8391253	8391315	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8391316	8391814	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8391815	8391979	1	-	0	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8391815	8391979	.	-	.	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	start_codon	8391977	8391979	.	-	0	transcript_id "Ledus.S1G086300.t1"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	transcript	8387403	8391979	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	stop_codon	8387400	8387402	.	-	0	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8387403	8387578	0.77	-	2	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8387403	8387578	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8387579	8387806	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8387807	8388062	0.35	-	0	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8387807	8388062	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8388063	8388156	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8388157	8388233	1	-	2	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8388157	8388233	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8388234	8388369	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8388370	8388461	1	-	1	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8388370	8388461	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8388462	8388554	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8388555	8388661	1	-	0	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8388555	8388661	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8388662	8388749	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8388750	8388835	1	-	2	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8388750	8388835	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8388836	8388988	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8388989	8389105	1	-	2	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8388989	8389105	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8389106	8389198	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8389199	8389282	1	-	2	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8389199	8389282	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8389283	8389408	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8389409	8389488	1	-	1	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8389409	8389488	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8389489	8389659	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8389660	8389754	1	-	0	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8389660	8389754	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8389755	8389833	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8389834	8389883	1	-	2	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8389834	8389883	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8389884	8390210	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8390211	8390289	1	-	0	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8390211	8390289	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8390290	8390435	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8390436	8390501	1	-	0	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8390436	8390501	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8390502	8390661	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8390662	8390731	1	-	1	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8390662	8390731	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8390732	8390898	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8390899	8390929	0.98	-	2	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8390899	8390929	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8390930	8391029	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8391030	8391120	1	-	0	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8391030	8391120	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8391121	8391252	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8391253	8391315	1	-	0	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8391253	8391315	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	intron	8391316	8391814	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	CDS	8391815	8391979	1	-	0	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	exon	8391815	8391979	.	-	.	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
Ledus.S1	AUGUSTUS	start_codon	8391977	8391979	.	-	0	transcript_id "Ledus.S1G086300.t2"; gene_id "Ledus.S1G086300"
# This transcript jg10696.t2 is derived from g11726.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg10696.t3 is derived from g11726.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10697.t1 is derived from g11727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17194261	17194734	.	+	.	Ledus.S3G217400
Ledus.S3	AUGUSTUS	transcript	17194261	17194734	.	+	.	transcript_id "Ledus.S3G217400.t1"; gene_id "Ledus.S3G217400"
Ledus.S3	AUGUSTUS	start_codon	17194261	17194263	.	+	0	transcript_id "Ledus.S3G217400.t1"; gene_id "Ledus.S3G217400"
Ledus.S3	AUGUSTUS	CDS	17194261	17194734	0.61	+	0	transcript_id "Ledus.S3G217400.t1"; gene_id "Ledus.S3G217400"
Ledus.S3	AUGUSTUS	exon	17194261	17194734	.	+	.	transcript_id "Ledus.S3G217400.t1"; gene_id "Ledus.S3G217400"
Ledus.S3	AUGUSTUS	stop_codon	17194735	17194737	.	+	0	transcript_id "Ledus.S3G217400.t1"; gene_id "Ledus.S3G217400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10617.t1 is derived from g11647.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16464252	16466155	.	-	.	Ledus.S3G209400
Ledus.S3	AUGUSTUS	transcript	16464252	16466155	.	-	.	transcript_id "Ledus.S3G209400.t1"; gene_id "Ledus.S3G209400"
Ledus.S3	AUGUSTUS	stop_codon	16464249	16464251	.	-	0	transcript_id "Ledus.S3G209400.t1"; gene_id "Ledus.S3G209400"
Ledus.S3	AUGUSTUS	CDS	16464252	16465381	1	-	2	transcript_id "Ledus.S3G209400.t1"; gene_id "Ledus.S3G209400"
Ledus.S3	AUGUSTUS	exon	16464252	16465381	.	-	.	transcript_id "Ledus.S3G209400.t1"; gene_id "Ledus.S3G209400"
Ledus.S3	AUGUSTUS	intron	16465382	16465491	.	-	.	transcript_id "Ledus.S3G209400.t1"; gene_id "Ledus.S3G209400"
Ledus.S3	AUGUSTUS	CDS	16465492	16466155	1	-	0	transcript_id "Ledus.S3G209400.t1"; gene_id "Ledus.S3G209400"
Ledus.S3	AUGUSTUS	exon	16465492	16466155	.	-	.	transcript_id "Ledus.S3G209400.t1"; gene_id "Ledus.S3G209400"
Ledus.S3	AUGUSTUS	start_codon	16466153	16466155	.	-	0	transcript_id "Ledus.S3G209400.t1"; gene_id "Ledus.S3G209400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7273.t1 is derived from g11944.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	676033	677370	.	-	.	Ledus.S5G005100
Ledus.S5	AUGUSTUS	transcript	676033	677370	.	-	.	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	stop_codon	676030	676032	.	-	0	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	CDS	676033	676302	1	-	0	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	exon	676033	676302	.	-	.	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	intron	676303	676380	.	-	.	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	CDS	676381	676515	1	-	0	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	exon	676381	676515	.	-	.	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	intron	676516	676597	.	-	.	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	CDS	676598	676706	1	-	1	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	exon	676598	676706	.	-	.	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	intron	676707	676784	.	-	.	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	CDS	676785	676925	1	-	1	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	exon	676785	676925	.	-	.	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	intron	676926	677008	.	-	.	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	CDS	677009	677186	1	-	2	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	exon	677009	677186	.	-	.	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	intron	677187	677279	.	-	.	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	CDS	677280	677370	0.38	-	0	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	exon	677280	677370	.	-	.	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
Ledus.S5	AUGUSTUS	start_codon	677368	677370	.	-	0	transcript_id "Ledus.S5G005100.t1"; gene_id "Ledus.S5G005100"
# This transcript jg9780.t2 is derived from g10810.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9781.t1 is derived from g10811.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9768115	9770250	.	+	.	Ledus.S3G125800
Ledus.S3	AUGUSTUS	transcript	9768115	9770250	.	+	.	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	start_codon	9768115	9768117	.	+	0	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	CDS	9768115	9768521	0.85	+	0	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	exon	9768115	9768521	.	+	.	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	intron	9768522	9768672	.	+	.	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	CDS	9768673	9768775	1	+	1	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	exon	9768673	9768775	.	+	.	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	intron	9768776	9768956	.	+	.	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	CDS	9768957	9770042	0.69	+	0	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	exon	9768957	9770042	.	+	.	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	intron	9770043	9770121	.	+	.	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	CDS	9770122	9770250	0.66	+	0	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	exon	9770122	9770250	.	+	.	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
Ledus.S3	AUGUSTUS	stop_codon	9770251	9770253	.	+	0	transcript_id "Ledus.S3G125800.t1"; gene_id "Ledus.S3G125800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3537.t1 is derived from g973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9330857	9336959	.	+	.	Ledus.S1G095800
Ledus.S1	AUGUSTUS	transcript	9330857	9336959	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	start_codon	9330857	9330859	.	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9330857	9330961	0.85	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9330857	9330961	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9330962	9331118	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9331119	9331210	1	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9331119	9331210	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9331211	9331369	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9331370	9331544	1	+	1	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9331370	9331544	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9331545	9331638	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9331639	9331761	1	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9331639	9331761	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9331762	9331894	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9331895	9332068	1	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9331895	9332068	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9332069	9332190	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9332191	9332301	1	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9332191	9332301	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9332302	9332472	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9332473	9332606	1	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9332473	9332606	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9332607	9332736	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9332737	9332830	1	+	1	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9332737	9332830	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9332831	9332953	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9332954	9333052	0.96	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9332954	9333052	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9333053	9333159	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9333160	9333296	0.99	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9333160	9333296	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9333297	9333444	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9333445	9333539	0.61	+	1	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9333445	9333539	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9333540	9333643	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9333644	9333770	1	+	2	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9333644	9333770	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9333771	9333874	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9333875	9333962	1	+	1	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9333875	9333962	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9333963	9334057	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9334058	9334157	1	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9334058	9334157	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9334158	9334269	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9334270	9334322	0.92	+	2	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9334270	9334322	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9334323	9334440	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9334441	9334617	0.98	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9334441	9334617	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9334618	9334727	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9334728	9334765	1	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9334728	9334765	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9334766	9334852	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9334853	9334949	1	+	1	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9334853	9334949	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9334950	9335179	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9335180	9335359	1	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9335180	9335359	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9335360	9335442	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9335443	9335551	1	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9335443	9335551	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9335552	9335648	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9335649	9335718	0.98	+	2	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9335649	9335718	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9335719	9335837	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9335838	9335988	1	+	1	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9335838	9335988	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9335989	9336113	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9336114	9336242	1	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9336114	9336242	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9336243	9336317	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9336318	9336443	1	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9336318	9336443	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9336444	9336543	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9336544	9336609	1	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9336544	9336609	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	intron	9336610	9336710	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	CDS	9336711	9336959	0.82	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	exon	9336711	9336959	.	+	.	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
Ledus.S1	AUGUSTUS	stop_codon	9336960	9336962	.	+	0	transcript_id "Ledus.S1G095800.t1"; gene_id "Ledus.S1G095800"
# This transcript jg7584.t2 is derived from g12255.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7585.t1 is derived from g12256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4201684	4202198	.	+	.	Ledus.S5G036300
Ledus.S5	AUGUSTUS	transcript	4201684	4202198	.	+	.	transcript_id "Ledus.S5G036300.t1"; gene_id "Ledus.S5G036300"
Ledus.S5	AUGUSTUS	start_codon	4201684	4201686	.	+	0	transcript_id "Ledus.S5G036300.t1"; gene_id "Ledus.S5G036300"
Ledus.S5	AUGUSTUS	CDS	4201684	4201824	0.83	+	0	transcript_id "Ledus.S5G036300.t1"; gene_id "Ledus.S5G036300"
Ledus.S5	AUGUSTUS	exon	4201684	4201824	.	+	.	transcript_id "Ledus.S5G036300.t1"; gene_id "Ledus.S5G036300"
Ledus.S5	AUGUSTUS	intron	4201825	4201902	.	+	.	transcript_id "Ledus.S5G036300.t1"; gene_id "Ledus.S5G036300"
Ledus.S5	AUGUSTUS	CDS	4201903	4201988	1	+	0	transcript_id "Ledus.S5G036300.t1"; gene_id "Ledus.S5G036300"
Ledus.S5	AUGUSTUS	exon	4201903	4201988	.	+	.	transcript_id "Ledus.S5G036300.t1"; gene_id "Ledus.S5G036300"
Ledus.S5	AUGUSTUS	intron	4201989	4202083	.	+	.	transcript_id "Ledus.S5G036300.t1"; gene_id "Ledus.S5G036300"
Ledus.S5	AUGUSTUS	CDS	4202084	4202198	1	+	1	transcript_id "Ledus.S5G036300.t1"; gene_id "Ledus.S5G036300"
Ledus.S5	AUGUSTUS	exon	4202084	4202198	.	+	.	transcript_id "Ledus.S5G036300.t1"; gene_id "Ledus.S5G036300"
Ledus.S5	AUGUSTUS	stop_codon	4202199	4202201	.	+	0	transcript_id "Ledus.S5G036300.t1"; gene_id "Ledus.S5G036300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4281.t1 is derived from g1717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15992639	15993124	.	+	.	Ledus.S1G170200
Ledus.S1	AUGUSTUS	transcript	15992639	15993124	.	+	.	transcript_id "Ledus.S1G170200.t1"; gene_id "Ledus.S1G170200"
Ledus.S1	AUGUSTUS	start_codon	15992639	15992641	.	+	0	transcript_id "Ledus.S1G170200.t1"; gene_id "Ledus.S1G170200"
Ledus.S1	AUGUSTUS	CDS	15992639	15993124	0.28	+	0	transcript_id "Ledus.S1G170200.t1"; gene_id "Ledus.S1G170200"
Ledus.S1	AUGUSTUS	exon	15992639	15993124	.	+	.	transcript_id "Ledus.S1G170200.t1"; gene_id "Ledus.S1G170200"
Ledus.S1	AUGUSTUS	stop_codon	15993125	15993127	.	+	0	transcript_id "Ledus.S1G170200.t1"; gene_id "Ledus.S1G170200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5798.t1 is derived from g3240.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26970458	26972012	.	-	.	Ledus.S1G321900
Ledus.S1	AUGUSTUS	transcript	26970458	26972012	.	-	.	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	stop_codon	26970455	26970457	.	-	0	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	CDS	26970458	26970781	0.4	-	0	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	exon	26970458	26970781	.	-	.	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	intron	26970782	26970877	.	-	.	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	CDS	26970878	26971193	1	-	1	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	exon	26970878	26971193	.	-	.	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	intron	26971194	26971331	.	-	.	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	CDS	26971332	26971631	1	-	1	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	exon	26971332	26971631	.	-	.	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	intron	26971632	26971716	.	-	.	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	CDS	26971717	26972012	0.98	-	0	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	exon	26971717	26972012	.	-	.	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
Ledus.S1	AUGUSTUS	start_codon	26972010	26972012	.	-	0	transcript_id "Ledus.S1G321900.t1"; gene_id "Ledus.S1G321900"
# This transcript jg11247.t2 is derived from g4865.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11248.t1 is derived from g4866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2928199	2929871	.	-	.	Ledus.S4G040400
Ledus.S4	AUGUSTUS	transcript	2928199	2929871	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	stop_codon	2928196	2928198	.	-	0	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	CDS	2928199	2928365	1	-	2	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	exon	2928199	2928365	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	intron	2928366	2928506	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	CDS	2928507	2928579	0.79	-	0	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	exon	2928507	2928579	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	intron	2928580	2928695	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	CDS	2928696	2928791	0.79	-	0	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	exon	2928696	2928791	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	intron	2928792	2928925	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	CDS	2928926	2928989	1	-	1	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	exon	2928926	2928989	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	intron	2928990	2929097	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	CDS	2929098	2929149	1	-	2	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	exon	2929098	2929149	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	intron	2929150	2929311	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	CDS	2929312	2929409	1	-	1	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	exon	2929312	2929409	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	intron	2929410	2929574	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	CDS	2929575	2929633	1	-	0	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	exon	2929575	2929633	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	intron	2929634	2929838	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	CDS	2929839	2929871	0.76	-	0	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	exon	2929839	2929871	.	-	.	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
Ledus.S4	AUGUSTUS	start_codon	2929869	2929871	.	-	0	transcript_id "Ledus.S4G040400.t1"; gene_id "Ledus.S4G040400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13008.t1 is derived from g6818.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2655088	2655384	.	+	.	Ledus.S6G007000
Ledus.S6	AUGUSTUS	transcript	2655088	2655384	.	+	.	transcript_id "Ledus.S6G007000.t1"; gene_id "Ledus.S6G007000"
Ledus.S6	AUGUSTUS	start_codon	2655088	2655090	.	+	0	transcript_id "Ledus.S6G007000.t1"; gene_id "Ledus.S6G007000"
Ledus.S6	AUGUSTUS	CDS	2655088	2655384	0.95	+	0	transcript_id "Ledus.S6G007000.t1"; gene_id "Ledus.S6G007000"
Ledus.S6	AUGUSTUS	exon	2655088	2655384	.	+	.	transcript_id "Ledus.S6G007000.t1"; gene_id "Ledus.S6G007000"
Ledus.S6	AUGUSTUS	stop_codon	2655385	2655387	.	+	0	transcript_id "Ledus.S6G007000.t1"; gene_id "Ledus.S6G007000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7664.t1 is derived from g12335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4921685	4921882	.	-	.	Ledus.S5G044200
Ledus.S5	AUGUSTUS	transcript	4921685	4921882	.	-	.	transcript_id "Ledus.S5G044200.t1"; gene_id "Ledus.S5G044200"
Ledus.S5	AUGUSTUS	stop_codon	4921682	4921684	.	-	0	transcript_id "Ledus.S5G044200.t1"; gene_id "Ledus.S5G044200"
Ledus.S5	AUGUSTUS	CDS	4921685	4921882	0.8	-	0	transcript_id "Ledus.S5G044200.t1"; gene_id "Ledus.S5G044200"
Ledus.S5	AUGUSTUS	exon	4921685	4921882	.	-	.	transcript_id "Ledus.S5G044200.t1"; gene_id "Ledus.S5G044200"
Ledus.S5	AUGUSTUS	start_codon	4921880	4921882	.	-	0	transcript_id "Ledus.S5G044200.t1"; gene_id "Ledus.S5G044200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11623.t1 is derived from g5241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5617047	5617669	.	-	.	Ledus.S4G077900
Ledus.S4	AUGUSTUS	transcript	5617047	5617669	.	-	.	transcript_id "Ledus.S4G077900.t1"; gene_id "Ledus.S4G077900"
Ledus.S4	AUGUSTUS	stop_codon	5617044	5617046	.	-	0	transcript_id "Ledus.S4G077900.t1"; gene_id "Ledus.S4G077900"
Ledus.S4	AUGUSTUS	CDS	5617047	5617321	0.51	-	2	transcript_id "Ledus.S4G077900.t1"; gene_id "Ledus.S4G077900"
Ledus.S4	AUGUSTUS	exon	5617047	5617321	.	-	.	transcript_id "Ledus.S4G077900.t1"; gene_id "Ledus.S4G077900"
Ledus.S4	AUGUSTUS	intron	5617322	5617469	.	-	.	transcript_id "Ledus.S4G077900.t1"; gene_id "Ledus.S4G077900"
Ledus.S4	AUGUSTUS	CDS	5617470	5617528	0.61	-	1	transcript_id "Ledus.S4G077900.t1"; gene_id "Ledus.S4G077900"
Ledus.S4	AUGUSTUS	exon	5617470	5617528	.	-	.	transcript_id "Ledus.S4G077900.t1"; gene_id "Ledus.S4G077900"
Ledus.S4	AUGUSTUS	intron	5617529	5617601	.	-	.	transcript_id "Ledus.S4G077900.t1"; gene_id "Ledus.S4G077900"
Ledus.S4	AUGUSTUS	CDS	5617602	5617669	0.61	-	0	transcript_id "Ledus.S4G077900.t1"; gene_id "Ledus.S4G077900"
Ledus.S4	AUGUSTUS	exon	5617602	5617669	.	-	.	transcript_id "Ledus.S4G077900.t1"; gene_id "Ledus.S4G077900"
Ledus.S4	AUGUSTUS	start_codon	5617667	5617669	.	-	0	transcript_id "Ledus.S4G077900.t1"; gene_id "Ledus.S4G077900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1067.t1 is derived from g7928.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7214965	7216061	.	+	.	Ledus.S2G094900
Ledus.S2	AUGUSTUS	transcript	7214965	7216061	.	+	.	transcript_id "Ledus.S2G094900.t1"; gene_id "Ledus.S2G094900"
Ledus.S2	AUGUSTUS	start_codon	7214965	7214967	.	+	0	transcript_id "Ledus.S2G094900.t1"; gene_id "Ledus.S2G094900"
Ledus.S2	AUGUSTUS	CDS	7214965	7215136	0.4	+	0	transcript_id "Ledus.S2G094900.t1"; gene_id "Ledus.S2G094900"
Ledus.S2	AUGUSTUS	exon	7214965	7215136	.	+	.	transcript_id "Ledus.S2G094900.t1"; gene_id "Ledus.S2G094900"
Ledus.S2	AUGUSTUS	intron	7215137	7215356	.	+	.	transcript_id "Ledus.S2G094900.t1"; gene_id "Ledus.S2G094900"
Ledus.S2	AUGUSTUS	CDS	7215357	7215700	0.42	+	2	transcript_id "Ledus.S2G094900.t1"; gene_id "Ledus.S2G094900"
Ledus.S2	AUGUSTUS	exon	7215357	7215700	.	+	.	transcript_id "Ledus.S2G094900.t1"; gene_id "Ledus.S2G094900"
Ledus.S2	AUGUSTUS	intron	7215701	7215791	.	+	.	transcript_id "Ledus.S2G094900.t1"; gene_id "Ledus.S2G094900"
Ledus.S2	AUGUSTUS	CDS	7215792	7216061	0.92	+	0	transcript_id "Ledus.S2G094900.t1"; gene_id "Ledus.S2G094900"
Ledus.S2	AUGUSTUS	exon	7215792	7216061	.	+	.	transcript_id "Ledus.S2G094900.t1"; gene_id "Ledus.S2G094900"
Ledus.S2	AUGUSTUS	stop_codon	7216062	7216064	.	+	0	transcript_id "Ledus.S2G094900.t1"; gene_id "Ledus.S2G094900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6760.t1 is derived from g4203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33890061	33890321	.	-	.	Ledus.S1G418100
Ledus.S1	AUGUSTUS	transcript	33890061	33890321	.	-	.	transcript_id "Ledus.S1G418100.t1"; gene_id "Ledus.S1G418100"
Ledus.S1	AUGUSTUS	stop_codon	33890058	33890060	.	-	0	transcript_id "Ledus.S1G418100.t1"; gene_id "Ledus.S1G418100"
Ledus.S1	AUGUSTUS	CDS	33890061	33890321	0.71	-	0	transcript_id "Ledus.S1G418100.t1"; gene_id "Ledus.S1G418100"
Ledus.S1	AUGUSTUS	exon	33890061	33890321	.	-	.	transcript_id "Ledus.S1G418100.t1"; gene_id "Ledus.S1G418100"
Ledus.S1	AUGUSTUS	start_codon	33890319	33890321	.	-	0	transcript_id "Ledus.S1G418100.t1"; gene_id "Ledus.S1G418100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7845.t1 is derived from g12516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7429785	7429997	.	+	.	Ledus.S5G062300
Ledus.S5	AUGUSTUS	transcript	7429785	7429997	.	+	.	transcript_id "Ledus.S5G062300.t1"; gene_id "Ledus.S5G062300"
Ledus.S5	AUGUSTUS	start_codon	7429785	7429787	.	+	0	transcript_id "Ledus.S5G062300.t1"; gene_id "Ledus.S5G062300"
Ledus.S5	AUGUSTUS	CDS	7429785	7429997	0.56	+	0	transcript_id "Ledus.S5G062300.t1"; gene_id "Ledus.S5G062300"
Ledus.S5	AUGUSTUS	exon	7429785	7429997	.	+	.	transcript_id "Ledus.S5G062300.t1"; gene_id "Ledus.S5G062300"
Ledus.S5	AUGUSTUS	stop_codon	7429998	7430000	.	+	0	transcript_id "Ledus.S5G062300.t1"; gene_id "Ledus.S5G062300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12862.t1 is derived from g4435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	66013	68117	.	+	.	Ledus.C10G000500
Ledus.C10	AUGUSTUS	transcript	66013	68117	.	+	.	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	start_codon	66013	66015	.	+	0	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	CDS	66013	66098	1	+	0	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	exon	66013	66098	.	+	.	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	intron	66099	66712	.	+	.	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	CDS	66713	66872	1	+	1	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	exon	66713	66872	.	+	.	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	intron	66873	66961	.	+	.	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	CDS	66962	67070	1	+	0	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	exon	66962	67070	.	+	.	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	intron	67071	68040	.	+	.	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	CDS	68041	68117	0.01	+	2	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	exon	68041	68117	.	+	.	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
Ledus.C10	AUGUSTUS	stop_codon	68118	68120	.	+	0	transcript_id "Ledus.C10G000500.t1"; gene_id "Ledus.C10G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12943.t1 is derived from g6753.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	266706	266981	.	+	.	Ledus.S6G000500
Ledus.S6	AUGUSTUS	transcript	266706	266981	.	+	.	transcript_id "Ledus.S6G000500.t1"; gene_id "Ledus.S6G000500"
Ledus.S6	AUGUSTUS	start_codon	266706	266708	.	+	0	transcript_id "Ledus.S6G000500.t1"; gene_id "Ledus.S6G000500"
Ledus.S6	AUGUSTUS	CDS	266706	266981	0.41	+	0	transcript_id "Ledus.S6G000500.t1"; gene_id "Ledus.S6G000500"
Ledus.S6	AUGUSTUS	exon	266706	266981	.	+	.	transcript_id "Ledus.S6G000500.t1"; gene_id "Ledus.S6G000500"
Ledus.S6	AUGUSTUS	stop_codon	267160	267162	.	+	0	transcript_id "Ledus.S6G000500.t1"; gene_id "Ledus.S6G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2498.t1 is derived from g9361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18480238	18485039	.	+	.	Ledus.S2G238000
Ledus.S2	AUGUSTUS	transcript	18480238	18485039	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	start_codon	18480238	18480240	.	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18480238	18480354	1	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18480238	18480354	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18480355	18480444	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18480445	18480732	1	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18480445	18480732	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18480733	18480828	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18480829	18480883	0.75	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18480829	18480883	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18480884	18481062	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18481063	18481214	0.75	+	2	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18481063	18481214	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18481215	18481310	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18481311	18481421	1	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18481311	18481421	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18481422	18481589	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18481590	18482660	1	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18481590	18482660	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18482661	18482888	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18482889	18483041	1	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18482889	18483041	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18483042	18483153	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18483154	18483253	0.84	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18483154	18483253	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18483254	18483364	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18483365	18483459	0.93	+	2	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18483365	18483459	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18483460	18483545	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18483546	18483641	0.99	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18483546	18483641	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18483642	18483858	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18483859	18483915	1	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18483859	18483915	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18483916	18483999	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18484000	18484071	1	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18484000	18484071	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18484072	18484169	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18484170	18484268	1	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18484170	18484268	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18484269	18484350	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18484351	18484482	1	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18484351	18484482	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18484483	18484552	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18484553	18484726	1	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18484553	18484726	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	intron	18484727	18484808	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	CDS	18484809	18485039	0.97	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	exon	18484809	18485039	.	+	.	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
Ledus.S2	AUGUSTUS	stop_codon	18485040	18485042	.	+	0	transcript_id "Ledus.S2G238000.t1"; gene_id "Ledus.S2G238000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1883.t1 is derived from g8746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13181781	13183013	.	-	.	Ledus.S2G176500
Ledus.S2	AUGUSTUS	transcript	13181781	13183013	.	-	.	transcript_id "Ledus.S2G176500.t1"; gene_id "Ledus.S2G176500"
Ledus.S2	AUGUSTUS	stop_codon	13181778	13181780	.	-	0	transcript_id "Ledus.S2G176500.t1"; gene_id "Ledus.S2G176500"
Ledus.S2	AUGUSTUS	CDS	13181781	13182017	0.77	-	0	transcript_id "Ledus.S2G176500.t1"; gene_id "Ledus.S2G176500"
Ledus.S2	AUGUSTUS	exon	13181781	13182017	.	-	.	transcript_id "Ledus.S2G176500.t1"; gene_id "Ledus.S2G176500"
Ledus.S2	AUGUSTUS	intron	13182018	13182088	.	-	.	transcript_id "Ledus.S2G176500.t1"; gene_id "Ledus.S2G176500"
Ledus.S2	AUGUSTUS	CDS	13182089	13182296	1	-	1	transcript_id "Ledus.S2G176500.t1"; gene_id "Ledus.S2G176500"
Ledus.S2	AUGUSTUS	exon	13182089	13182296	.	-	.	transcript_id "Ledus.S2G176500.t1"; gene_id "Ledus.S2G176500"
Ledus.S2	AUGUSTUS	intron	13182297	13182384	.	-	.	transcript_id "Ledus.S2G176500.t1"; gene_id "Ledus.S2G176500"
Ledus.S2	AUGUSTUS	CDS	13182385	13183013	0.99	-	0	transcript_id "Ledus.S2G176500.t1"; gene_id "Ledus.S2G176500"
Ledus.S2	AUGUSTUS	exon	13182385	13183013	.	-	.	transcript_id "Ledus.S2G176500.t1"; gene_id "Ledus.S2G176500"
Ledus.S2	AUGUSTUS	start_codon	13183011	13183013	.	-	0	transcript_id "Ledus.S2G176500.t1"; gene_id "Ledus.S2G176500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11369.t1 is derived from g4987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3846470	3849658	.	+	.	Ledus.S4G052500
Ledus.S4	AUGUSTUS	transcript	3846470	3849658	.	+	.	transcript_id "Ledus.S4G052500.t1"; gene_id "Ledus.S4G052500"
Ledus.S4	AUGUSTUS	start_codon	3846470	3846472	.	+	0	transcript_id "Ledus.S4G052500.t1"; gene_id "Ledus.S4G052500"
Ledus.S4	AUGUSTUS	CDS	3846470	3849658	1	+	0	transcript_id "Ledus.S4G052500.t1"; gene_id "Ledus.S4G052500"
Ledus.S4	AUGUSTUS	exon	3846470	3849658	.	+	.	transcript_id "Ledus.S4G052500.t1"; gene_id "Ledus.S4G052500"
Ledus.S4	AUGUSTUS	stop_codon	3849659	3849661	.	+	0	transcript_id "Ledus.S4G052500.t1"; gene_id "Ledus.S4G052500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8445.t1 is derived from g13117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11715717	11716402	.	-	.	Ledus.S5G122300
Ledus.S5	AUGUSTUS	transcript	11715717	11716402	.	-	.	transcript_id "Ledus.S5G122300.t1"; gene_id "Ledus.S5G122300"
Ledus.S5	AUGUSTUS	stop_codon	11715714	11715716	.	-	0	transcript_id "Ledus.S5G122300.t1"; gene_id "Ledus.S5G122300"
Ledus.S5	AUGUSTUS	CDS	11715717	11716208	0.93	-	0	transcript_id "Ledus.S5G122300.t1"; gene_id "Ledus.S5G122300"
Ledus.S5	AUGUSTUS	exon	11715717	11716208	.	-	.	transcript_id "Ledus.S5G122300.t1"; gene_id "Ledus.S5G122300"
Ledus.S5	AUGUSTUS	intron	11716209	11716324	.	-	.	transcript_id "Ledus.S5G122300.t1"; gene_id "Ledus.S5G122300"
Ledus.S5	AUGUSTUS	CDS	11716325	11716402	0.83	-	0	transcript_id "Ledus.S5G122300.t1"; gene_id "Ledus.S5G122300"
Ledus.S5	AUGUSTUS	exon	11716325	11716402	.	-	.	transcript_id "Ledus.S5G122300.t1"; gene_id "Ledus.S5G122300"
Ledus.S5	AUGUSTUS	start_codon	11716400	11716402	.	-	0	transcript_id "Ledus.S5G122300.t1"; gene_id "Ledus.S5G122300"
# This transcript jg9182.t2 is derived from g10212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9183.t1 is derived from g10213.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5268442	5270216	.	+	.	Ledus.S3G066000
Ledus.S3	AUGUSTUS	transcript	5268442	5270216	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	start_codon	5268442	5268444	.	+	0	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	CDS	5268442	5268459	0.95	+	0	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	exon	5268442	5268459	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	intron	5268460	5268586	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	CDS	5268587	5268807	1	+	0	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	exon	5268587	5268807	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	intron	5268808	5269109	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	CDS	5269110	5269247	0.94	+	1	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	exon	5269110	5269247	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	intron	5269248	5269391	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	CDS	5269392	5269425	0.94	+	1	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	exon	5269392	5269425	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	intron	5269426	5269578	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	CDS	5269579	5269588	0.94	+	0	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	exon	5269579	5269588	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	intron	5269589	5269659	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	CDS	5269660	5269701	0.92	+	2	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	exon	5269660	5269701	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	intron	5269702	5269792	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	CDS	5269793	5269834	1	+	2	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	exon	5269793	5269834	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	intron	5269835	5269985	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	CDS	5269986	5270062	1	+	2	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	exon	5269986	5270062	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	intron	5270063	5270153	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	CDS	5270154	5270216	1	+	0	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	exon	5270154	5270216	.	+	.	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
Ledus.S3	AUGUSTUS	stop_codon	5270217	5270219	.	+	0	transcript_id "Ledus.S3G066000.t1"; gene_id "Ledus.S3G066000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3771.t1 is derived from g1207.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11888106	11890686	.	-	.	Ledus.S1G119200
Ledus.S1	AUGUSTUS	transcript	11888106	11890686	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	stop_codon	11888103	11888105	.	-	0	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11888106	11888106	0.91	-	1	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11888106	11888106	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11888107	11888245	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11888246	11888255	0.91	-	2	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11888246	11888255	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11888256	11888460	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11888461	11888500	0.75	-	0	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11888461	11888500	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11888501	11888579	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11888580	11888672	1	-	0	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11888580	11888672	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11888673	11888853	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11888854	11888916	1	-	0	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11888854	11888916	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11888917	11889181	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11889182	11889279	1	-	2	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11889182	11889279	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11889280	11889409	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11889410	11889475	1	-	2	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11889410	11889475	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11889476	11889651	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11889652	11889752	1	-	1	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11889652	11889752	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11889753	11889858	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11889859	11889931	1	-	2	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11889859	11889931	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11889932	11890274	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11890275	11890358	1	-	2	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11890275	11890358	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11890359	11890586	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11890587	11890686	0.57	-	0	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11890587	11890686	.	-	.	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	start_codon	11890684	11890686	.	-	0	transcript_id "Ledus.S1G119200.t1"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	transcript	11888106	11890624	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	stop_codon	11888103	11888105	.	-	0	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11888106	11888106	0.88	-	1	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11888106	11888106	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11888107	11888245	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11888246	11888255	0.88	-	2	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11888246	11888255	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11888256	11888460	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11888461	11888500	0.77	-	0	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11888461	11888500	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11888501	11888579	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11888580	11888672	1	-	0	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11888580	11888672	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11888673	11888853	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11888854	11888916	1	-	0	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11888854	11888916	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11888917	11889181	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11889182	11889279	1	-	2	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11889182	11889279	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11889280	11889409	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11889410	11889475	1	-	2	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11889410	11889475	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11889476	11889651	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11889652	11889752	1	-	1	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11889652	11889752	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11889753	11889858	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11889859	11889931	1	-	2	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11889859	11889931	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11889932	11890274	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11890275	11890358	0.62	-	2	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11890275	11890358	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	intron	11890359	11890497	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	CDS	11890498	11890624	0.56	-	0	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	exon	11890498	11890624	.	-	.	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
Ledus.S1	AUGUSTUS	start_codon	11890622	11890624	.	-	0	transcript_id "Ledus.S1G119200.t2"; gene_id "Ledus.S1G119200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9237.t1 is derived from g10267.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5549740	5550655	.	-	.	Ledus.S3G071400
Ledus.S3	AUGUSTUS	transcript	5549740	5550655	.	-	.	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	stop_codon	5549737	5549739	.	-	0	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	CDS	5549740	5550245	1	-	2	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	exon	5549740	5550245	.	-	.	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	intron	5550246	5550318	.	-	.	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	CDS	5550319	5550398	1	-	1	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	exon	5550319	5550398	.	-	.	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	intron	5550399	5550484	.	-	.	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	CDS	5550485	5550527	1	-	2	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	exon	5550485	5550527	.	-	.	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	intron	5550528	5550624	.	-	.	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	CDS	5550625	5550655	1	-	0	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	exon	5550625	5550655	.	-	.	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
Ledus.S3	AUGUSTUS	start_codon	5550653	5550655	.	-	0	transcript_id "Ledus.S3G071400.t1"; gene_id "Ledus.S3G071400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13160.t1 is derived from g6970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7693313	7693543	.	-	.	Ledus.S6G022200
Ledus.S6	AUGUSTUS	transcript	7693313	7693543	.	-	.	transcript_id "Ledus.S6G022200.t1"; gene_id "Ledus.S6G022200"
Ledus.S6	AUGUSTUS	stop_codon	7693310	7693312	.	-	0	transcript_id "Ledus.S6G022200.t1"; gene_id "Ledus.S6G022200"
Ledus.S6	AUGUSTUS	CDS	7693313	7693543	0.96	-	0	transcript_id "Ledus.S6G022200.t1"; gene_id "Ledus.S6G022200"
Ledus.S6	AUGUSTUS	exon	7693313	7693543	.	-	.	transcript_id "Ledus.S6G022200.t1"; gene_id "Ledus.S6G022200"
Ledus.S6	AUGUSTUS	start_codon	7693541	7693543	.	-	0	transcript_id "Ledus.S6G022200.t1"; gene_id "Ledus.S6G022200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7518.t1 is derived from g12189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3552637	3556140	.	-	.	Ledus.S5G029600
Ledus.S5	AUGUSTUS	transcript	3552637	3556140	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	stop_codon	3552634	3552636	.	-	0	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	CDS	3552637	3552878	0.82	-	2	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	exon	3552637	3552878	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	intron	3552879	3552989	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	CDS	3552990	3553116	0.96	-	0	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	exon	3552990	3553116	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	intron	3553117	3553237	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	CDS	3553238	3553294	1	-	0	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	exon	3553238	3553294	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	intron	3553295	3553386	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	CDS	3553387	3553468	1	-	1	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	exon	3553387	3553468	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	intron	3553469	3553566	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	CDS	3553567	3553622	1	-	0	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	exon	3553567	3553622	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	intron	3553623	3553741	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	CDS	3553742	3553812	1	-	2	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	exon	3553742	3553812	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	intron	3553813	3553899	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	CDS	3553900	3553960	1	-	0	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	exon	3553900	3553960	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	intron	3553961	3554069	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	CDS	3554070	3554183	0.99	-	0	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	exon	3554070	3554183	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	intron	3554184	3554280	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	CDS	3554281	3554338	1	-	1	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	exon	3554281	3554338	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	intron	3554339	3554457	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	CDS	3554458	3555619	1	-	2	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	exon	3554458	3555619	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	intron	3555620	3555737	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	CDS	3555738	3556140	1	-	0	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	exon	3555738	3556140	.	-	.	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
Ledus.S5	AUGUSTUS	start_codon	3556138	3556140	.	-	0	transcript_id "Ledus.S5G029600.t1"; gene_id "Ledus.S5G029600"
# This transcript jg6134.t2 is derived from g3577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6135.t1 is derived from g3578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29157052	29157496	.	+	.	Ledus.S1G355600
Ledus.S1	AUGUSTUS	transcript	29157052	29157496	.	+	.	transcript_id "Ledus.S1G355600.t1"; gene_id "Ledus.S1G355600"
Ledus.S1	AUGUSTUS	start_codon	29157052	29157054	.	+	0	transcript_id "Ledus.S1G355600.t1"; gene_id "Ledus.S1G355600"
Ledus.S1	AUGUSTUS	CDS	29157052	29157059	0.37	+	0	transcript_id "Ledus.S1G355600.t1"; gene_id "Ledus.S1G355600"
Ledus.S1	AUGUSTUS	exon	29157052	29157059	.	+	.	transcript_id "Ledus.S1G355600.t1"; gene_id "Ledus.S1G355600"
Ledus.S1	AUGUSTUS	intron	29157060	29157174	.	+	.	transcript_id "Ledus.S1G355600.t1"; gene_id "Ledus.S1G355600"
Ledus.S1	AUGUSTUS	CDS	29157175	29157193	0.81	+	1	transcript_id "Ledus.S1G355600.t1"; gene_id "Ledus.S1G355600"
Ledus.S1	AUGUSTUS	exon	29157175	29157193	.	+	.	transcript_id "Ledus.S1G355600.t1"; gene_id "Ledus.S1G355600"
Ledus.S1	AUGUSTUS	intron	29157194	29157289	.	+	.	transcript_id "Ledus.S1G355600.t1"; gene_id "Ledus.S1G355600"
Ledus.S1	AUGUSTUS	CDS	29157290	29157496	0.68	+	0	transcript_id "Ledus.S1G355600.t1"; gene_id "Ledus.S1G355600"
Ledus.S1	AUGUSTUS	exon	29157290	29157496	.	+	.	transcript_id "Ledus.S1G355600.t1"; gene_id "Ledus.S1G355600"
Ledus.S1	AUGUSTUS	stop_codon	29157497	29157499	.	+	0	transcript_id "Ledus.S1G355600.t1"; gene_id "Ledus.S1G355600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10990.t1 is derived from g4608.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1026441	1029280	.	-	.	Ledus.S4G014600
Ledus.S4	AUGUSTUS	transcript	1026441	1029280	.	-	.	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	stop_codon	1026438	1026440	.	-	0	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	CDS	1026441	1026730	0.99	-	2	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	exon	1026441	1026730	.	-	.	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	intron	1026731	1026801	.	-	.	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	CDS	1026802	1027155	1	-	2	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	exon	1026802	1027155	.	-	.	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	intron	1027156	1027253	.	-	.	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	CDS	1027254	1027625	1	-	2	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	exon	1027254	1027625	.	-	.	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	intron	1027626	1028345	.	-	.	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	CDS	1028346	1028708	1	-	2	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	exon	1028346	1028708	.	-	.	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	intron	1028709	1028790	.	-	.	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	CDS	1028791	1029280	0.94	-	0	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	exon	1028791	1029280	.	-	.	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
Ledus.S4	AUGUSTUS	start_codon	1029278	1029280	.	-	0	transcript_id "Ledus.S4G014600.t1"; gene_id "Ledus.S4G014600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7553.t1 is derived from g12224.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4014849	4015763	.	-	.	Ledus.S5G033100
Ledus.S5	AUGUSTUS	transcript	4014849	4015763	.	-	.	transcript_id "Ledus.S5G033100.t1"; gene_id "Ledus.S5G033100"
Ledus.S5	AUGUSTUS	stop_codon	4014846	4014848	.	-	0	transcript_id "Ledus.S5G033100.t1"; gene_id "Ledus.S5G033100"
Ledus.S5	AUGUSTUS	CDS	4014849	4015763	0.98	-	0	transcript_id "Ledus.S5G033100.t1"; gene_id "Ledus.S5G033100"
Ledus.S5	AUGUSTUS	exon	4014849	4015763	.	-	.	transcript_id "Ledus.S5G033100.t1"; gene_id "Ledus.S5G033100"
Ledus.S5	AUGUSTUS	start_codon	4015761	4015763	.	-	0	transcript_id "Ledus.S5G033100.t1"; gene_id "Ledus.S5G033100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9562.t1 is derived from g10592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7786576	7787580	.	-	.	Ledus.S3G103900
Ledus.S3	AUGUSTUS	transcript	7786576	7787580	.	-	.	transcript_id "Ledus.S3G103900.t1"; gene_id "Ledus.S3G103900"
Ledus.S3	AUGUSTUS	stop_codon	7786573	7786575	.	-	0	transcript_id "Ledus.S3G103900.t1"; gene_id "Ledus.S3G103900"
Ledus.S3	AUGUSTUS	CDS	7786576	7787580	0.65	-	0	transcript_id "Ledus.S3G103900.t1"; gene_id "Ledus.S3G103900"
Ledus.S3	AUGUSTUS	exon	7786576	7787580	.	-	.	transcript_id "Ledus.S3G103900.t1"; gene_id "Ledus.S3G103900"
Ledus.S3	AUGUSTUS	start_codon	7787578	7787580	.	-	0	transcript_id "Ledus.S3G103900.t1"; gene_id "Ledus.S3G103900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6329.t1 is derived from g3772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30513750	30517070	.	-	.	Ledus.S1G375000
Ledus.S1	AUGUSTUS	transcript	30513750	30517070	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	stop_codon	30513747	30513749	.	-	0	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	CDS	30513750	30513944	0.94	-	0	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	exon	30513750	30513944	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	intron	30513945	30514045	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	CDS	30514046	30514114	0.98	-	0	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	exon	30514046	30514114	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	intron	30514115	30514321	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	CDS	30514322	30514391	1	-	1	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	exon	30514322	30514391	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	intron	30514392	30514533	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	CDS	30514534	30514787	0.6	-	0	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	exon	30514534	30514787	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	intron	30514788	30514915	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	CDS	30514916	30515075	0.99	-	1	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	exon	30514916	30515075	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	intron	30515076	30515176	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	CDS	30515177	30515254	0.91	-	1	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	exon	30515177	30515254	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	intron	30515255	30515336	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	CDS	30515337	30515557	1	-	0	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	exon	30515337	30515557	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	intron	30515558	30515754	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	CDS	30515755	30516004	1	-	1	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	exon	30515755	30516004	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	intron	30516005	30516104	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	CDS	30516105	30516230	1	-	1	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	exon	30516105	30516230	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	intron	30516231	30516696	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	CDS	30516697	30517070	0.68	-	0	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	exon	30516697	30517070	.	-	.	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
Ledus.S1	AUGUSTUS	start_codon	30517068	30517070	.	-	0	transcript_id "Ledus.S1G375000.t1"; gene_id "Ledus.S1G375000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9225.t1 is derived from g10255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5504802	5505314	.	+	.	Ledus.S3G070200
Ledus.S3	AUGUSTUS	transcript	5504802	5505314	.	+	.	transcript_id "Ledus.S3G070200.t1"; gene_id "Ledus.S3G070200"
Ledus.S3	AUGUSTUS	start_codon	5504802	5504804	.	+	0	transcript_id "Ledus.S3G070200.t1"; gene_id "Ledus.S3G070200"
Ledus.S3	AUGUSTUS	CDS	5504802	5505314	0.99	+	0	transcript_id "Ledus.S3G070200.t1"; gene_id "Ledus.S3G070200"
Ledus.S3	AUGUSTUS	exon	5504802	5505314	.	+	.	transcript_id "Ledus.S3G070200.t1"; gene_id "Ledus.S3G070200"
Ledus.S3	AUGUSTUS	stop_codon	5505315	5505317	.	+	0	transcript_id "Ledus.S3G070200.t1"; gene_id "Ledus.S3G070200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9501.t1 is derived from g10531.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7454626	7455624	.	+	.	Ledus.S3G097800
Ledus.S3	AUGUSTUS	transcript	7454626	7455624	.	+	.	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	start_codon	7454626	7454628	.	+	0	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	CDS	7454626	7454659	0.69	+	0	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	exon	7454626	7454659	.	+	.	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	intron	7454660	7454751	.	+	.	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	CDS	7454752	7454832	1	+	2	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	exon	7454752	7454832	.	+	.	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	intron	7454833	7454919	.	+	.	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	CDS	7454920	7455032	0.96	+	2	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	exon	7454920	7455032	.	+	.	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	intron	7455033	7455142	.	+	.	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	CDS	7455143	7455335	0.98	+	0	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	exon	7455143	7455335	.	+	.	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	intron	7455336	7455445	.	+	.	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	CDS	7455446	7455624	0.92	+	2	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	exon	7455446	7455624	.	+	.	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
Ledus.S3	AUGUSTUS	stop_codon	7455625	7455627	.	+	0	transcript_id "Ledus.S3G097800.t1"; gene_id "Ledus.S3G097800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg732.t1 is derived from g7593.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4640509	4641462	.	-	.	Ledus.S2G061400
Ledus.S2	AUGUSTUS	transcript	4640509	4641462	.	-	.	transcript_id "Ledus.S2G061400.t1"; gene_id "Ledus.S2G061400"
Ledus.S2	AUGUSTUS	stop_codon	4640506	4640508	.	-	0	transcript_id "Ledus.S2G061400.t1"; gene_id "Ledus.S2G061400"
Ledus.S2	AUGUSTUS	CDS	4640509	4641462	0.94	-	0	transcript_id "Ledus.S2G061400.t1"; gene_id "Ledus.S2G061400"
Ledus.S2	AUGUSTUS	exon	4640509	4641462	.	-	.	transcript_id "Ledus.S2G061400.t1"; gene_id "Ledus.S2G061400"
Ledus.S2	AUGUSTUS	start_codon	4641460	4641462	.	-	0	transcript_id "Ledus.S2G061400.t1"; gene_id "Ledus.S2G061400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11451.t1 is derived from g5069.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4392753	4395081	.	+	.	Ledus.S4G060700
Ledus.S4	AUGUSTUS	transcript	4392753	4395081	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	start_codon	4392753	4392755	.	+	0	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	CDS	4392753	4392817	0.77	+	0	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	exon	4392753	4392817	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	intron	4392818	4393355	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	CDS	4393356	4393389	0.82	+	1	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	exon	4393356	4393389	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	intron	4393390	4393508	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	CDS	4393509	4393580	0.95	+	0	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	exon	4393509	4393580	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	intron	4393581	4394052	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	CDS	4394053	4394096	1	+	0	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	exon	4394053	4394096	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	intron	4394097	4394635	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	CDS	4394636	4394744	1	+	1	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	exon	4394636	4394744	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	intron	4394745	4394846	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	CDS	4394847	4394902	1	+	0	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	exon	4394847	4394902	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	intron	4394903	4394999	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	CDS	4395000	4395081	0.65	+	1	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	exon	4395000	4395081	.	+	.	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	stop_codon	4395082	4395084	.	+	0	transcript_id "Ledus.S4G060700.t1"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	transcript	4393485	4395081	.	+	.	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	start_codon	4393485	4393487	.	+	0	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	CDS	4393485	4393580	0.75	+	0	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	exon	4393485	4393580	.	+	.	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	intron	4393581	4394052	.	+	.	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	CDS	4394053	4394096	1	+	0	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	exon	4394053	4394096	.	+	.	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	intron	4394097	4394635	.	+	.	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	CDS	4394636	4394744	0.98	+	1	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	exon	4394636	4394744	.	+	.	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	intron	4394745	4394846	.	+	.	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	CDS	4394847	4394902	0.98	+	0	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	exon	4394847	4394902	.	+	.	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	intron	4394903	4394999	.	+	.	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	CDS	4395000	4395081	0.63	+	1	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	exon	4395000	4395081	.	+	.	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
Ledus.S4	AUGUSTUS	stop_codon	4395082	4395084	.	+	0	transcript_id "Ledus.S4G060700.t2"; gene_id "Ledus.S4G060700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10935.t1 is derived from g4553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	700294	701535	.	+	.	Ledus.S4G009100
Ledus.S4	AUGUSTUS	transcript	700294	701535	.	+	.	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	start_codon	700294	700296	.	+	0	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	CDS	700294	700371	0.89	+	0	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	exon	700294	700371	.	+	.	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	intron	700372	700464	.	+	.	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	CDS	700465	700553	1	+	0	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	exon	700465	700553	.	+	.	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	intron	700554	700693	.	+	.	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	CDS	700694	700720	1	+	1	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	exon	700694	700720	.	+	.	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	intron	700721	700892	.	+	.	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	CDS	700893	700987	1	+	1	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	exon	700893	700987	.	+	.	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	intron	700988	701169	.	+	.	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	CDS	701170	701279	0.99	+	2	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	exon	701170	701279	.	+	.	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	intron	701280	701388	.	+	.	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	CDS	701389	701535	0.96	+	0	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	exon	701389	701535	.	+	.	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
Ledus.S4	AUGUSTUS	stop_codon	701536	701538	.	+	0	transcript_id "Ledus.S4G009100.t1"; gene_id "Ledus.S4G009100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2212.t1 is derived from g9075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16086208	16087443	.	+	.	Ledus.S2G209400
Ledus.S2	AUGUSTUS	transcript	16086208	16087443	.	+	.	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	start_codon	16086208	16086210	.	+	0	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	CDS	16086208	16086686	0.29	+	0	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	exon	16086208	16086686	.	+	.	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	intron	16086687	16086874	.	+	.	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	CDS	16086875	16086899	0.47	+	1	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	exon	16086875	16086899	.	+	.	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	intron	16086900	16086989	.	+	.	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	CDS	16086990	16087107	0.45	+	0	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	exon	16086990	16087107	.	+	.	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	intron	16087108	16087303	.	+	.	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	CDS	16087304	16087443	0.4	+	2	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	exon	16087304	16087443	.	+	.	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
Ledus.S2	AUGUSTUS	stop_codon	16087444	16087446	.	+	0	transcript_id "Ledus.S2G209400.t1"; gene_id "Ledus.S2G209400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6263.t1 is derived from g3706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29965369	29965674	.	+	.	Ledus.S1G368400
Ledus.S1	AUGUSTUS	transcript	29965369	29965674	.	+	.	transcript_id "Ledus.S1G368400.t1"; gene_id "Ledus.S1G368400"
Ledus.S1	AUGUSTUS	start_codon	29965369	29965371	.	+	0	transcript_id "Ledus.S1G368400.t1"; gene_id "Ledus.S1G368400"
Ledus.S1	AUGUSTUS	CDS	29965369	29965674	0.87	+	0	transcript_id "Ledus.S1G368400.t1"; gene_id "Ledus.S1G368400"
Ledus.S1	AUGUSTUS	exon	29965369	29965674	.	+	.	transcript_id "Ledus.S1G368400.t1"; gene_id "Ledus.S1G368400"
Ledus.S1	AUGUSTUS	stop_codon	29965675	29965677	.	+	0	transcript_id "Ledus.S1G368400.t1"; gene_id "Ledus.S1G368400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11101.t1 is derived from g4719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1790641	1790907	.	-	.	Ledus.S4G025700
Ledus.S4	AUGUSTUS	transcript	1790641	1790907	.	-	.	transcript_id "Ledus.S4G025700.t1"; gene_id "Ledus.S4G025700"
Ledus.S4	AUGUSTUS	stop_codon	1790638	1790640	.	-	0	transcript_id "Ledus.S4G025700.t1"; gene_id "Ledus.S4G025700"
Ledus.S4	AUGUSTUS	CDS	1790641	1790907	0.64	-	0	transcript_id "Ledus.S4G025700.t1"; gene_id "Ledus.S4G025700"
Ledus.S4	AUGUSTUS	exon	1790641	1790907	.	-	.	transcript_id "Ledus.S4G025700.t1"; gene_id "Ledus.S4G025700"
Ledus.S4	AUGUSTUS	start_codon	1790905	1790907	.	-	0	transcript_id "Ledus.S4G025700.t1"; gene_id "Ledus.S4G025700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg599.t1 is derived from g7460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3563863	3565238	.	+	.	Ledus.S2G048100
Ledus.S2	AUGUSTUS	transcript	3563863	3565238	.	+	.	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	start_codon	3563863	3563865	.	+	0	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	CDS	3563863	3563956	0.67	+	0	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	exon	3563863	3563956	.	+	.	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	intron	3563957	3564032	.	+	.	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	CDS	3564033	3564191	0.43	+	2	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	exon	3564033	3564191	.	+	.	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	intron	3564192	3564337	.	+	.	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	CDS	3564338	3564699	0.28	+	2	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	exon	3564338	3564699	.	+	.	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	intron	3564700	3564803	.	+	.	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	CDS	3564804	3564876	0.6	+	0	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	exon	3564804	3564876	.	+	.	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	intron	3564877	3565128	.	+	.	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	CDS	3565129	3565238	0.52	+	2	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	exon	3565129	3565238	.	+	.	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
Ledus.S2	AUGUSTUS	stop_codon	3565239	3565241	.	+	0	transcript_id "Ledus.S2G048100.t1"; gene_id "Ledus.S2G048100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4448.t1 is derived from g1884.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17148175	17150763	.	-	.	Ledus.S1G186900
Ledus.S1	AUGUSTUS	transcript	17148175	17150763	.	-	.	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	stop_codon	17148172	17148174	.	-	0	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	CDS	17148175	17148366	0.29	-	0	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	exon	17148175	17148366	.	-	.	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	intron	17148367	17148462	.	-	.	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	CDS	17148463	17148540	1	-	0	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	exon	17148463	17148540	.	-	.	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	intron	17148541	17148653	.	-	.	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	CDS	17148654	17149295	0.96	-	0	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	exon	17148654	17149295	.	-	.	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	intron	17149296	17149414	.	-	.	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	CDS	17149415	17149529	0.99	-	1	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	exon	17149415	17149529	.	-	.	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	intron	17149530	17149779	.	-	.	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	CDS	17149780	17150222	0.99	-	0	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	exon	17149780	17150222	.	-	.	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	intron	17150223	17150373	.	-	.	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	CDS	17150374	17150763	0.99	-	0	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	exon	17150374	17150763	.	-	.	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
Ledus.S1	AUGUSTUS	start_codon	17150761	17150763	.	-	0	transcript_id "Ledus.S1G186900.t1"; gene_id "Ledus.S1G186900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9429.t1 is derived from g10459.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6697930	6699431	.	+	.	Ledus.S3G090600
Ledus.S3	AUGUSTUS	transcript	6697930	6699431	.	+	.	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	start_codon	6697930	6697932	.	+	0	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	CDS	6697930	6697982	0.99	+	0	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	exon	6697930	6697982	.	+	.	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	intron	6697983	6698063	.	+	.	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	CDS	6698064	6698199	1	+	1	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	exon	6698064	6698199	.	+	.	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	intron	6698200	6698297	.	+	.	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	CDS	6698298	6698394	1	+	0	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	exon	6698298	6698394	.	+	.	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	intron	6698395	6698563	.	+	.	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	CDS	6698564	6698679	0.94	+	2	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	exon	6698564	6698679	.	+	.	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	intron	6698680	6698792	.	+	.	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	CDS	6698793	6699128	0.44	+	0	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	exon	6698793	6699128	.	+	.	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	intron	6699129	6699332	.	+	.	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	CDS	6699333	6699431	0.98	+	0	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	exon	6699333	6699431	.	+	.	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
Ledus.S3	AUGUSTUS	stop_codon	6699432	6699434	.	+	0	transcript_id "Ledus.S3G090600.t1"; gene_id "Ledus.S3G090600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11406.t1 is derived from g5024.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4024621	4028690	.	-	.	Ledus.S4G056200
Ledus.S4	AUGUSTUS	transcript	4024621	4028690	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	stop_codon	4024618	4024620	.	-	0	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4024621	4024728	1	-	0	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4024621	4024728	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4024729	4024819	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4024820	4024958	1	-	1	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4024820	4024958	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4024959	4025096	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4025097	4025341	1	-	0	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4025097	4025341	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4025342	4025438	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4025439	4025760	1	-	1	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4025439	4025760	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4025761	4025914	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4025915	4026139	0.91	-	1	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4025915	4026139	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4026140	4026240	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4026241	4026407	0.98	-	0	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4026241	4026407	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4026408	4026540	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4026541	4026657	1	-	0	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4026541	4026657	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4026658	4026756	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4026757	4026933	1	-	0	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4026757	4026933	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4026934	4027024	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4027025	4027120	1	-	0	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4027025	4027120	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4027121	4027258	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4027259	4027475	1	-	1	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4027259	4027475	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4027476	4027558	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4027559	4027677	1	-	0	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4027559	4027677	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4027678	4027762	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4027763	4027958	1	-	1	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4027763	4027958	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4027959	4028129	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4028130	4028302	1	-	0	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4028130	4028302	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4028303	4028387	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4028388	4028517	1	-	1	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4028388	4028517	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	intron	4028518	4028589	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	CDS	4028590	4028690	0.52	-	0	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	exon	4028590	4028690	.	-	.	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
Ledus.S4	AUGUSTUS	start_codon	4028688	4028690	.	-	0	transcript_id "Ledus.S4G056200.t1"; gene_id "Ledus.S4G056200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5926.t1 is derived from g3369.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27876997	27877489	.	+	.	Ledus.S1G334700
Ledus.S1	AUGUSTUS	transcript	27876997	27877489	.	+	.	transcript_id "Ledus.S1G334700.t1"; gene_id "Ledus.S1G334700"
Ledus.S1	AUGUSTUS	start_codon	27876997	27876999	.	+	0	transcript_id "Ledus.S1G334700.t1"; gene_id "Ledus.S1G334700"
Ledus.S1	AUGUSTUS	CDS	27876997	27877027	0.75	+	0	transcript_id "Ledus.S1G334700.t1"; gene_id "Ledus.S1G334700"
Ledus.S1	AUGUSTUS	exon	27876997	27877027	.	+	.	transcript_id "Ledus.S1G334700.t1"; gene_id "Ledus.S1G334700"
Ledus.S1	AUGUSTUS	intron	27877028	27877118	.	+	.	transcript_id "Ledus.S1G334700.t1"; gene_id "Ledus.S1G334700"
Ledus.S1	AUGUSTUS	CDS	27877119	27877489	0.83	+	2	transcript_id "Ledus.S1G334700.t1"; gene_id "Ledus.S1G334700"
Ledus.S1	AUGUSTUS	exon	27877119	27877489	.	+	.	transcript_id "Ledus.S1G334700.t1"; gene_id "Ledus.S1G334700"
Ledus.S1	AUGUSTUS	stop_codon	27877490	27877492	.	+	0	transcript_id "Ledus.S1G334700.t1"; gene_id "Ledus.S1G334700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11225.t1 is derived from g4843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2816050	2816967	.	-	.	Ledus.S4G038100
Ledus.S4	AUGUSTUS	transcript	2816050	2816967	.	-	.	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	stop_codon	2816047	2816049	.	-	0	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	CDS	2816050	2816113	1	-	1	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	exon	2816050	2816113	.	-	.	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	intron	2816114	2816226	.	-	.	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	CDS	2816227	2816294	1	-	0	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	exon	2816227	2816294	.	-	.	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	intron	2816295	2816376	.	-	.	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	CDS	2816377	2816428	1	-	1	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	exon	2816377	2816428	.	-	.	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	intron	2816429	2816522	.	-	.	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	CDS	2816523	2816695	1	-	0	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	exon	2816523	2816695	.	-	.	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	intron	2816696	2816787	.	-	.	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	CDS	2816788	2816821	1	-	1	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	exon	2816788	2816821	.	-	.	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	intron	2816822	2816923	.	-	.	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	CDS	2816924	2816967	0.98	-	0	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	exon	2816924	2816967	.	-	.	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
Ledus.S4	AUGUSTUS	start_codon	2816965	2816967	.	-	0	transcript_id "Ledus.S4G038100.t1"; gene_id "Ledus.S4G038100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10705.t1 is derived from g11735.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17293786	17294220	.	+	.	Ledus.S3G218200
Ledus.S3	AUGUSTUS	transcript	17293786	17294220	.	+	.	transcript_id "Ledus.S3G218200.t1"; gene_id "Ledus.S3G218200"
Ledus.S3	AUGUSTUS	start_codon	17293786	17293788	.	+	0	transcript_id "Ledus.S3G218200.t1"; gene_id "Ledus.S3G218200"
Ledus.S3	AUGUSTUS	CDS	17293786	17294220	0.86	+	0	transcript_id "Ledus.S3G218200.t1"; gene_id "Ledus.S3G218200"
Ledus.S3	AUGUSTUS	exon	17293786	17294220	.	+	.	transcript_id "Ledus.S3G218200.t1"; gene_id "Ledus.S3G218200"
Ledus.S3	AUGUSTUS	stop_codon	17294221	17294223	.	+	0	transcript_id "Ledus.S3G218200.t1"; gene_id "Ledus.S3G218200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg515.t1 is derived from g7376.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3011977	3014067	.	+	.	Ledus.S2G039700
Ledus.S2	AUGUSTUS	transcript	3011977	3014067	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	start_codon	3011977	3011979	.	+	0	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	CDS	3011977	3011981	0.53	+	0	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	exon	3011977	3011981	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	intron	3011982	3012076	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	CDS	3012077	3012103	1	+	1	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	exon	3012077	3012103	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	intron	3012104	3012291	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	CDS	3012292	3012299	0.97	+	1	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	exon	3012292	3012299	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	intron	3012300	3012561	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	CDS	3012562	3012792	0.97	+	2	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	exon	3012562	3012792	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	intron	3012793	3012943	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	CDS	3012944	3013027	0.9	+	2	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	exon	3012944	3013027	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	intron	3013028	3013110	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	CDS	3013111	3013139	0.9	+	2	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	exon	3013111	3013139	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	intron	3013140	3013199	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	CDS	3013200	3013230	0.85	+	0	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	exon	3013200	3013230	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	intron	3013231	3013357	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	CDS	3013358	3013377	0.76	+	2	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	exon	3013358	3013377	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	intron	3013378	3013458	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	CDS	3013459	3014067	1	+	0	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	exon	3013459	3014067	.	+	.	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
Ledus.S2	AUGUSTUS	stop_codon	3014068	3014070	.	+	0	transcript_id "Ledus.S2G039700.t1"; gene_id "Ledus.S2G039700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5789.t1 is derived from g3231.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26839331	26842486	.	+	.	Ledus.S1G321000
Ledus.S1	AUGUSTUS	transcript	26839331	26842486	.	+	.	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	start_codon	26839331	26839333	.	+	0	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	CDS	26839331	26840782	0.97	+	0	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	exon	26839331	26840782	.	+	.	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	intron	26840783	26840970	.	+	.	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	CDS	26840971	26841072	0.99	+	0	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	exon	26840971	26841072	.	+	.	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	intron	26841073	26841190	.	+	.	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	CDS	26841191	26841372	0.97	+	0	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	exon	26841191	26841372	.	+	.	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	intron	26841373	26841484	.	+	.	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	CDS	26841485	26841605	1	+	1	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	exon	26841485	26841605	.	+	.	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	intron	26841606	26841729	.	+	.	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	CDS	26841730	26841801	0.98	+	0	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	exon	26841730	26841801	.	+	.	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	intron	26841802	26841919	.	+	.	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	CDS	26841920	26842486	0.98	+	0	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	exon	26841920	26842486	.	+	.	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
Ledus.S1	AUGUSTUS	stop_codon	26842487	26842489	.	+	0	transcript_id "Ledus.S1G321000.t1"; gene_id "Ledus.S1G321000"
# This transcript jg5456.t2 is derived from g2895.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5457.t1 is derived from g2896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24389775	24390923	.	-	.	Ledus.S1G287800
Ledus.S1	AUGUSTUS	transcript	24389775	24390923	.	-	.	transcript_id "Ledus.S1G287800.t1"; gene_id "Ledus.S1G287800"
Ledus.S1	AUGUSTUS	stop_codon	24389772	24389774	.	-	0	transcript_id "Ledus.S1G287800.t1"; gene_id "Ledus.S1G287800"
Ledus.S1	AUGUSTUS	CDS	24389775	24390923	1	-	0	transcript_id "Ledus.S1G287800.t1"; gene_id "Ledus.S1G287800"
Ledus.S1	AUGUSTUS	exon	24389775	24390923	.	-	.	transcript_id "Ledus.S1G287800.t1"; gene_id "Ledus.S1G287800"
Ledus.S1	AUGUSTUS	start_codon	24390921	24390923	.	-	0	transcript_id "Ledus.S1G287800.t1"; gene_id "Ledus.S1G287800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg289.t1 is derived from g7150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1411817	1412719	.	-	.	Ledus.S2G017100
Ledus.S2	AUGUSTUS	transcript	1411817	1412719	.	-	.	transcript_id "Ledus.S2G017100.t1"; gene_id "Ledus.S2G017100"
Ledus.S2	AUGUSTUS	stop_codon	1411814	1411816	.	-	0	transcript_id "Ledus.S2G017100.t1"; gene_id "Ledus.S2G017100"
Ledus.S2	AUGUSTUS	CDS	1411817	1412719	0.61	-	0	transcript_id "Ledus.S2G017100.t1"; gene_id "Ledus.S2G017100"
Ledus.S2	AUGUSTUS	exon	1411817	1412719	.	-	.	transcript_id "Ledus.S2G017100.t1"; gene_id "Ledus.S2G017100"
Ledus.S2	AUGUSTUS	start_codon	1412717	1412719	.	-	0	transcript_id "Ledus.S2G017100.t1"; gene_id "Ledus.S2G017100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3071.t1 is derived from g506.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5692971	5693684	.	-	.	Ledus.S1G049200
Ledus.S1	AUGUSTUS	transcript	5692971	5693684	.	-	.	transcript_id "Ledus.S1G049200.t1"; gene_id "Ledus.S1G049200"
Ledus.S1	AUGUSTUS	stop_codon	5692968	5692970	.	-	0	transcript_id "Ledus.S1G049200.t1"; gene_id "Ledus.S1G049200"
Ledus.S1	AUGUSTUS	CDS	5692971	5693077	0.98	-	2	transcript_id "Ledus.S1G049200.t1"; gene_id "Ledus.S1G049200"
Ledus.S1	AUGUSTUS	exon	5692971	5693077	.	-	.	transcript_id "Ledus.S1G049200.t1"; gene_id "Ledus.S1G049200"
Ledus.S1	AUGUSTUS	intron	5693078	5693343	.	-	.	transcript_id "Ledus.S1G049200.t1"; gene_id "Ledus.S1G049200"
Ledus.S1	AUGUSTUS	CDS	5693344	5693378	0.98	-	1	transcript_id "Ledus.S1G049200.t1"; gene_id "Ledus.S1G049200"
Ledus.S1	AUGUSTUS	exon	5693344	5693378	.	-	.	transcript_id "Ledus.S1G049200.t1"; gene_id "Ledus.S1G049200"
Ledus.S1	AUGUSTUS	intron	5693379	5693520	.	-	.	transcript_id "Ledus.S1G049200.t1"; gene_id "Ledus.S1G049200"
Ledus.S1	AUGUSTUS	CDS	5693521	5693684	0.69	-	0	transcript_id "Ledus.S1G049200.t1"; gene_id "Ledus.S1G049200"
Ledus.S1	AUGUSTUS	exon	5693521	5693684	.	-	.	transcript_id "Ledus.S1G049200.t1"; gene_id "Ledus.S1G049200"
Ledus.S1	AUGUSTUS	start_codon	5693682	5693684	.	-	0	transcript_id "Ledus.S1G049200.t1"; gene_id "Ledus.S1G049200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4901.t1 is derived from g2339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20572229	20572958	.	-	.	Ledus.S1G232200
Ledus.S1	AUGUSTUS	transcript	20572229	20572958	.	-	.	transcript_id "Ledus.S1G232200.t1"; gene_id "Ledus.S1G232200"
Ledus.S1	AUGUSTUS	stop_codon	20572226	20572228	.	-	0	transcript_id "Ledus.S1G232200.t1"; gene_id "Ledus.S1G232200"
Ledus.S1	AUGUSTUS	CDS	20572229	20572657	0.69	-	0	transcript_id "Ledus.S1G232200.t1"; gene_id "Ledus.S1G232200"
Ledus.S1	AUGUSTUS	exon	20572229	20572657	.	-	.	transcript_id "Ledus.S1G232200.t1"; gene_id "Ledus.S1G232200"
Ledus.S1	AUGUSTUS	intron	20572658	20572754	.	-	.	transcript_id "Ledus.S1G232200.t1"; gene_id "Ledus.S1G232200"
Ledus.S1	AUGUSTUS	CDS	20572755	20572958	0.6	-	0	transcript_id "Ledus.S1G232200.t1"; gene_id "Ledus.S1G232200"
Ledus.S1	AUGUSTUS	exon	20572755	20572958	.	-	.	transcript_id "Ledus.S1G232200.t1"; gene_id "Ledus.S1G232200"
Ledus.S1	AUGUSTUS	start_codon	20572956	20572958	.	-	0	transcript_id "Ledus.S1G232200.t1"; gene_id "Ledus.S1G232200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1903.t1 is derived from g8766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13277158	13277898	.	-	.	Ledus.S2G178500
Ledus.S2	AUGUSTUS	transcript	13277158	13277898	.	-	.	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	stop_codon	13277155	13277157	.	-	0	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	CDS	13277158	13277295	1	-	0	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	exon	13277158	13277295	.	-	.	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	intron	13277296	13277391	.	-	.	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	CDS	13277392	13277518	1	-	1	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	exon	13277392	13277518	.	-	.	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	intron	13277519	13277612	.	-	.	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	CDS	13277613	13277768	1	-	1	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	exon	13277613	13277768	.	-	.	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	intron	13277769	13277893	.	-	.	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	CDS	13277894	13277898	0.92	-	0	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	exon	13277894	13277898	.	-	.	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
Ledus.S2	AUGUSTUS	start_codon	13277896	13277898	.	-	0	transcript_id "Ledus.S2G178500.t1"; gene_id "Ledus.S2G178500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11024.t1 is derived from g4642.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1256985	1259771	.	+	.	Ledus.S4G018000
Ledus.S4	AUGUSTUS	transcript	1256985	1259771	.	+	.	transcript_id "Ledus.S4G018000.t1"; gene_id "Ledus.S4G018000"
Ledus.S4	AUGUSTUS	start_codon	1256985	1256987	.	+	0	transcript_id "Ledus.S4G018000.t1"; gene_id "Ledus.S4G018000"
Ledus.S4	AUGUSTUS	CDS	1256985	1258279	0.77	+	0	transcript_id "Ledus.S4G018000.t1"; gene_id "Ledus.S4G018000"
Ledus.S4	AUGUSTUS	exon	1256985	1258279	.	+	.	transcript_id "Ledus.S4G018000.t1"; gene_id "Ledus.S4G018000"
Ledus.S4	AUGUSTUS	intron	1258280	1258614	.	+	.	transcript_id "Ledus.S4G018000.t1"; gene_id "Ledus.S4G018000"
Ledus.S4	AUGUSTUS	CDS	1258615	1259104	0.38	+	1	transcript_id "Ledus.S4G018000.t1"; gene_id "Ledus.S4G018000"
Ledus.S4	AUGUSTUS	exon	1258615	1259104	.	+	.	transcript_id "Ledus.S4G018000.t1"; gene_id "Ledus.S4G018000"
Ledus.S4	AUGUSTUS	intron	1259105	1259270	.	+	.	transcript_id "Ledus.S4G018000.t1"; gene_id "Ledus.S4G018000"
Ledus.S4	AUGUSTUS	CDS	1259271	1259771	0.86	+	0	transcript_id "Ledus.S4G018000.t1"; gene_id "Ledus.S4G018000"
Ledus.S4	AUGUSTUS	exon	1259271	1259771	.	+	.	transcript_id "Ledus.S4G018000.t1"; gene_id "Ledus.S4G018000"
Ledus.S4	AUGUSTUS	stop_codon	1259772	1259774	.	+	0	transcript_id "Ledus.S4G018000.t1"; gene_id "Ledus.S4G018000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5290.t1 is derived from g2729.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22874819	22876118	.	-	.	Ledus.S1G271100
Ledus.S1	AUGUSTUS	transcript	22874819	22876118	.	-	.	transcript_id "Ledus.S1G271100.t1"; gene_id "Ledus.S1G271100"
Ledus.S1	AUGUSTUS	stop_codon	22874816	22874818	.	-	0	transcript_id "Ledus.S1G271100.t1"; gene_id "Ledus.S1G271100"
Ledus.S1	AUGUSTUS	CDS	22874819	22874895	0.99	-	2	transcript_id "Ledus.S1G271100.t1"; gene_id "Ledus.S1G271100"
Ledus.S1	AUGUSTUS	exon	22874819	22874895	.	-	.	transcript_id "Ledus.S1G271100.t1"; gene_id "Ledus.S1G271100"
Ledus.S1	AUGUSTUS	intron	22874896	22875002	.	-	.	transcript_id "Ledus.S1G271100.t1"; gene_id "Ledus.S1G271100"
Ledus.S1	AUGUSTUS	CDS	22875003	22875869	0.66	-	2	transcript_id "Ledus.S1G271100.t1"; gene_id "Ledus.S1G271100"
Ledus.S1	AUGUSTUS	exon	22875003	22875869	.	-	.	transcript_id "Ledus.S1G271100.t1"; gene_id "Ledus.S1G271100"
Ledus.S1	AUGUSTUS	intron	22875870	22875973	.	-	.	transcript_id "Ledus.S1G271100.t1"; gene_id "Ledus.S1G271100"
Ledus.S1	AUGUSTUS	CDS	22875974	22876118	0.46	-	0	transcript_id "Ledus.S1G271100.t1"; gene_id "Ledus.S1G271100"
Ledus.S1	AUGUSTUS	exon	22875974	22876118	.	-	.	transcript_id "Ledus.S1G271100.t1"; gene_id "Ledus.S1G271100"
Ledus.S1	AUGUSTUS	start_codon	22876116	22876118	.	-	0	transcript_id "Ledus.S1G271100.t1"; gene_id "Ledus.S1G271100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9554.t1 is derived from g10584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7759731	7760845	.	+	.	Ledus.S3G103100
Ledus.S3	AUGUSTUS	transcript	7759731	7760845	.	+	.	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	start_codon	7759731	7759733	.	+	0	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	CDS	7759731	7759838	0.35	+	0	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	exon	7759731	7759838	.	+	.	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	intron	7759839	7760011	.	+	.	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	CDS	7760012	7760062	0.98	+	0	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	exon	7760012	7760062	.	+	.	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	intron	7760063	7760147	.	+	.	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	CDS	7760148	7760467	0.32	+	0	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	exon	7760148	7760467	.	+	.	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	intron	7760468	7760739	.	+	.	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	CDS	7760740	7760845	0.29	+	1	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	exon	7760740	7760845	.	+	.	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
Ledus.S3	AUGUSTUS	stop_codon	7760846	7760848	.	+	0	transcript_id "Ledus.S3G103100.t1"; gene_id "Ledus.S3G103100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11924.t1 is derived from g5543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7810341	7816881	.	+	.	Ledus.S4G108000
Ledus.S4	AUGUSTUS	transcript	7810341	7816881	.	+	.	transcript_id "Ledus.S4G108000.t1"; gene_id "Ledus.S4G108000"
Ledus.S4	AUGUSTUS	start_codon	7810341	7810343	.	+	0	transcript_id "Ledus.S4G108000.t1"; gene_id "Ledus.S4G108000"
Ledus.S4	AUGUSTUS	CDS	7810341	7816498	0.63	+	0	transcript_id "Ledus.S4G108000.t1"; gene_id "Ledus.S4G108000"
Ledus.S4	AUGUSTUS	exon	7810341	7816498	.	+	.	transcript_id "Ledus.S4G108000.t1"; gene_id "Ledus.S4G108000"
Ledus.S4	AUGUSTUS	intron	7816499	7816608	.	+	.	transcript_id "Ledus.S4G108000.t1"; gene_id "Ledus.S4G108000"
Ledus.S4	AUGUSTUS	CDS	7816609	7816640	0.64	+	1	transcript_id "Ledus.S4G108000.t1"; gene_id "Ledus.S4G108000"
Ledus.S4	AUGUSTUS	exon	7816609	7816640	.	+	.	transcript_id "Ledus.S4G108000.t1"; gene_id "Ledus.S4G108000"
Ledus.S4	AUGUSTUS	intron	7816641	7816831	.	+	.	transcript_id "Ledus.S4G108000.t1"; gene_id "Ledus.S4G108000"
Ledus.S4	AUGUSTUS	CDS	7816832	7816881	0.74	+	2	transcript_id "Ledus.S4G108000.t1"; gene_id "Ledus.S4G108000"
Ledus.S4	AUGUSTUS	exon	7816832	7816881	.	+	.	transcript_id "Ledus.S4G108000.t1"; gene_id "Ledus.S4G108000"
Ledus.S4	AUGUSTUS	stop_codon	7816882	7816884	.	+	0	transcript_id "Ledus.S4G108000.t1"; gene_id "Ledus.S4G108000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9445.t1 is derived from g10475.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6857650	6863683	.	-	.	Ledus.S3G092200
Ledus.S3	AUGUSTUS	transcript	6857650	6863683	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	stop_codon	6857647	6857649	.	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6857650	6857653	1	-	1	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6857650	6857653	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6857654	6857732	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6857733	6857833	0.95	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6857733	6857833	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6857834	6857972	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6857973	6858042	0.6	-	1	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6857973	6858042	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6858043	6858146	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6858147	6858272	0.88	-	1	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6858147	6858272	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6858273	6858366	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6858367	6858553	0.48	-	2	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6858367	6858553	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6858554	6858644	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6858645	6858804	1	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6858645	6858804	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6858805	6858986	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6858987	6859103	1	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6858987	6859103	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6859104	6859195	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6859196	6859353	1	-	2	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6859196	6859353	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6859354	6859434	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6859435	6859559	1	-	1	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6859435	6859559	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6859560	6859641	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6859642	6859770	1	-	1	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6859642	6859770	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6859771	6859959	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6859960	6860116	0.75	-	2	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6859960	6860116	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6860117	6860303	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6860304	6860337	0.75	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6860304	6860337	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6860338	6860449	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6860450	6860572	0.98	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6860450	6860572	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6860573	6860692	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6860693	6860799	0.95	-	2	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6860693	6860799	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6860800	6860917	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6860918	6861082	0.89	-	2	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6860918	6861082	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6861083	6861321	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6861322	6861408	1	-	2	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6861322	6861408	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6861409	6861505	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6861506	6861587	1	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6861506	6861587	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6861588	6861735	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6861736	6861870	1	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6861736	6861870	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6861871	6861947	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6861948	6862070	1	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6861948	6862070	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6862071	6862152	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6862153	6862209	1	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6862153	6862209	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6862210	6862359	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6862360	6862935	0.97	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6862360	6862935	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6862936	6863044	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6863045	6863263	0.94	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6863045	6863263	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6863264	6863497	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6863498	6863683	0.63	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6863498	6863683	.	-	.	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	start_codon	6863681	6863683	.	-	0	transcript_id "Ledus.S3G092200.t1"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	transcript	6857650	6863683	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	stop_codon	6857647	6857649	.	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6857650	6857653	1	-	1	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6857650	6857653	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6857654	6857732	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6857733	6857833	0.99	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6857733	6857833	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6857834	6857972	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6857973	6858042	0.58	-	1	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6857973	6858042	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6858043	6858146	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6858147	6858272	0.89	-	1	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6858147	6858272	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6858273	6858366	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6858367	6858553	0.61	-	2	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6858367	6858553	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6858554	6858644	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6858645	6858804	1	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6858645	6858804	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6858805	6858986	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6858987	6859103	1	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6858987	6859103	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6859104	6859195	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6859196	6859350	1	-	2	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6859196	6859350	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6859351	6859434	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6859435	6859559	1	-	1	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6859435	6859559	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6859560	6859641	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6859642	6859770	1	-	1	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6859642	6859770	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6859771	6859959	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6859960	6860116	0.76	-	2	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6859960	6860116	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6860117	6860303	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6860304	6860337	0.77	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6860304	6860337	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6860338	6860449	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6860450	6860572	0.94	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6860450	6860572	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6860573	6860692	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6860693	6860799	0.96	-	2	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6860693	6860799	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6860800	6860917	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6860918	6861082	0.82	-	2	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6860918	6861082	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6861083	6861321	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6861322	6861408	1	-	2	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6861322	6861408	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6861409	6861505	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6861506	6861587	1	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6861506	6861587	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6861588	6861735	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6861736	6861870	1	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6861736	6861870	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6861871	6861947	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6861948	6862070	1	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6861948	6862070	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6862071	6862152	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6862153	6862209	1	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6862153	6862209	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6862210	6862359	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6862360	6862935	0.96	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6862360	6862935	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6862936	6863044	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6863045	6863263	0.9	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6863045	6863263	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	intron	6863264	6863497	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	CDS	6863498	6863683	0.56	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	exon	6863498	6863683	.	-	.	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
Ledus.S3	AUGUSTUS	start_codon	6863681	6863683	.	-	0	transcript_id "Ledus.S3G092200.t2"; gene_id "Ledus.S3G092200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5269.t1 is derived from g2708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22796365	22797415	.	+	.	Ledus.S1G269000
Ledus.S1	AUGUSTUS	transcript	22796365	22797415	.	+	.	transcript_id "Ledus.S1G269000.t1"; gene_id "Ledus.S1G269000"
Ledus.S1	AUGUSTUS	start_codon	22796365	22796367	.	+	0	transcript_id "Ledus.S1G269000.t1"; gene_id "Ledus.S1G269000"
Ledus.S1	AUGUSTUS	CDS	22796365	22796637	0.48	+	0	transcript_id "Ledus.S1G269000.t1"; gene_id "Ledus.S1G269000"
Ledus.S1	AUGUSTUS	exon	22796365	22796637	.	+	.	transcript_id "Ledus.S1G269000.t1"; gene_id "Ledus.S1G269000"
Ledus.S1	AUGUSTUS	intron	22796638	22796718	.	+	.	transcript_id "Ledus.S1G269000.t1"; gene_id "Ledus.S1G269000"
Ledus.S1	AUGUSTUS	CDS	22796719	22797096	0.91	+	0	transcript_id "Ledus.S1G269000.t1"; gene_id "Ledus.S1G269000"
Ledus.S1	AUGUSTUS	exon	22796719	22797096	.	+	.	transcript_id "Ledus.S1G269000.t1"; gene_id "Ledus.S1G269000"
Ledus.S1	AUGUSTUS	intron	22797097	22797184	.	+	.	transcript_id "Ledus.S1G269000.t1"; gene_id "Ledus.S1G269000"
Ledus.S1	AUGUSTUS	CDS	22797185	22797415	1	+	0	transcript_id "Ledus.S1G269000.t1"; gene_id "Ledus.S1G269000"
Ledus.S1	AUGUSTUS	exon	22797185	22797415	.	+	.	transcript_id "Ledus.S1G269000.t1"; gene_id "Ledus.S1G269000"
Ledus.S1	AUGUSTUS	stop_codon	22797416	22797418	.	+	0	transcript_id "Ledus.S1G269000.t1"; gene_id "Ledus.S1G269000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3418.t1 is derived from g853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8170195	8171347	.	-	.	Ledus.S1G083900
Ledus.S1	AUGUSTUS	transcript	8170195	8171347	.	-	.	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	stop_codon	8170192	8170194	.	-	0	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	CDS	8170195	8170247	0.94	-	2	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	exon	8170195	8170247	.	-	.	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	intron	8170248	8170504	.	-	.	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	CDS	8170505	8170601	0.94	-	0	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	exon	8170505	8170601	.	-	.	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	intron	8170602	8170742	.	-	.	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	CDS	8170743	8170827	0.92	-	1	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	exon	8170743	8170827	.	-	.	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	intron	8170828	8171022	.	-	.	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	CDS	8171023	8171088	1	-	1	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	exon	8171023	8171088	.	-	.	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	intron	8171089	8171291	.	-	.	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	CDS	8171292	8171347	0.98	-	0	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	exon	8171292	8171347	.	-	.	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	start_codon	8171345	8171347	.	-	0	transcript_id "Ledus.S1G083900.t1"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	transcript	8170195	8171347	.	-	.	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	stop_codon	8170192	8170194	.	-	0	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	CDS	8170195	8170247	0.98	-	2	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	exon	8170195	8170247	.	-	.	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	intron	8170248	8170508	.	-	.	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	CDS	8170509	8170519	0.62	-	1	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	exon	8170509	8170519	.	-	.	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	intron	8170520	8170595	.	-	.	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	CDS	8170596	8170669	0.62	-	0	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	exon	8170596	8170669	.	-	.	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	intron	8170670	8170742	.	-	.	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	CDS	8170743	8170827	0.97	-	1	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	exon	8170743	8170827	.	-	.	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	intron	8170828	8171022	.	-	.	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	CDS	8171023	8171088	1	-	1	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	exon	8171023	8171088	.	-	.	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	intron	8171089	8171291	.	-	.	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	CDS	8171292	8171347	0.99	-	0	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	exon	8171292	8171347	.	-	.	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
Ledus.S1	AUGUSTUS	start_codon	8171345	8171347	.	-	0	transcript_id "Ledus.S1G083900.t2"; gene_id "Ledus.S1G083900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12037.t1 is derived from g5656.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9044208	9046590	.	-	.	Ledus.S4G119300
Ledus.S4	AUGUSTUS	transcript	9044208	9046590	.	-	.	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	stop_codon	9044205	9044207	.	-	0	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	CDS	9044208	9044231	1	-	0	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	exon	9044208	9044231	.	-	.	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	intron	9044232	9044364	.	-	.	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	CDS	9044365	9044438	1	-	2	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	exon	9044365	9044438	.	-	.	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	intron	9044439	9044551	.	-	.	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	CDS	9044552	9044667	0.8	-	1	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	exon	9044552	9044667	.	-	.	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	intron	9044668	9044748	.	-	.	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	CDS	9044749	9045787	0.56	-	2	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	exon	9044749	9045787	.	-	.	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	intron	9045788	9045989	.	-	.	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	CDS	9045990	9046590	0.88	-	0	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	exon	9045990	9046590	.	-	.	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
Ledus.S4	AUGUSTUS	start_codon	9046588	9046590	.	-	0	transcript_id "Ledus.S4G119300.t1"; gene_id "Ledus.S4G119300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8637.t1 is derived from g9667.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	995498	997769	.	-	.	Ledus.S3G011400
Ledus.S3	AUGUSTUS	transcript	995498	997769	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	stop_codon	995495	995497	.	-	0	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	CDS	995498	995573	1	-	1	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	exon	995498	995573	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	intron	995574	995709	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	CDS	995710	995761	0.99	-	2	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	exon	995710	995761	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	intron	995762	995960	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	CDS	995961	996106	0.56	-	1	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	exon	995961	996106	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	intron	996107	996237	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	CDS	996238	996274	0.58	-	2	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	exon	996238	996274	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	intron	996275	996447	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	CDS	996448	996474	0.49	-	2	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	exon	996448	996474	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	intron	996475	996563	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	CDS	996564	996627	1	-	0	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	exon	996564	996627	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	intron	996628	996742	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	CDS	996743	996977	1	-	1	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	exon	996743	996977	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	intron	996978	997062	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	CDS	997063	997769	1	-	0	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	exon	997063	997769	.	-	.	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
Ledus.S3	AUGUSTUS	start_codon	997767	997769	.	-	0	transcript_id "Ledus.S3G011400.t1"; gene_id "Ledus.S3G011400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6000.t1 is derived from g3443.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28208968	28211684	.	-	.	Ledus.S1G342100
Ledus.S1	AUGUSTUS	transcript	28208968	28211684	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	stop_codon	28208965	28208967	.	-	0	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28208968	28209111	1	-	0	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28208968	28209111	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28209112	28209212	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28209213	28209253	1	-	2	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28209213	28209253	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28209254	28209325	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28209326	28209371	1	-	0	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28209326	28209371	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28209372	28209465	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28209466	28209581	1	-	2	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28209466	28209581	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28209582	28209659	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28209660	28209753	1	-	0	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28209660	28209753	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28209754	28209867	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28209868	28209946	1	-	1	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28209868	28209946	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28209947	28210044	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28210045	28210142	1	-	0	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28210045	28210142	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28210143	28210224	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28210225	28210284	1	-	0	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28210225	28210284	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28210285	28210423	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28210424	28210748	0.68	-	1	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28210424	28210748	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28210749	28210868	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28210869	28210914	0.62	-	2	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28210869	28210914	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28210915	28211126	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28211127	28211162	0.47	-	2	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28211127	28211162	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28211163	28211293	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28211294	28211401	0.31	-	2	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28211294	28211401	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28211402	28211490	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28211491	28211570	0.99	-	1	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28211491	28211570	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	intron	28211571	28211658	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	CDS	28211659	28211684	0.97	-	0	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	exon	28211659	28211684	.	-	.	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
Ledus.S1	AUGUSTUS	start_codon	28211682	28211684	.	-	0	transcript_id "Ledus.S1G342100.t1"; gene_id "Ledus.S1G342100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11720.t1 is derived from g5339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6254414	6255412	.	+	.	Ledus.S4G087600
Ledus.S4	AUGUSTUS	transcript	6254414	6255412	.	+	.	transcript_id "Ledus.S4G087600.t1"; gene_id "Ledus.S4G087600"
Ledus.S4	AUGUSTUS	start_codon	6254414	6254416	.	+	0	transcript_id "Ledus.S4G087600.t1"; gene_id "Ledus.S4G087600"
Ledus.S4	AUGUSTUS	CDS	6254414	6255412	0.86	+	0	transcript_id "Ledus.S4G087600.t1"; gene_id "Ledus.S4G087600"
Ledus.S4	AUGUSTUS	exon	6254414	6255412	.	+	.	transcript_id "Ledus.S4G087600.t1"; gene_id "Ledus.S4G087600"
Ledus.S4	AUGUSTUS	stop_codon	6255413	6255415	.	+	0	transcript_id "Ledus.S4G087600.t1"; gene_id "Ledus.S4G087600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11186.t1 is derived from g4804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2497696	2499374	.	+	.	Ledus.S4G034200
Ledus.S4	AUGUSTUS	transcript	2497696	2499374	.	+	.	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	start_codon	2497696	2497698	.	+	0	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	CDS	2497696	2497721	1	+	0	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	exon	2497696	2497721	.	+	.	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	intron	2497722	2497936	.	+	.	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	CDS	2497937	2498058	0.78	+	1	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	exon	2497937	2498058	.	+	.	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	intron	2498059	2498178	.	+	.	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	CDS	2498179	2498486	0.93	+	2	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	exon	2498179	2498486	.	+	.	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	intron	2498487	2498630	.	+	.	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	CDS	2498631	2499374	0.97	+	0	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	exon	2498631	2499374	.	+	.	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
Ledus.S4	AUGUSTUS	stop_codon	2499375	2499377	.	+	0	transcript_id "Ledus.S4G034200.t1"; gene_id "Ledus.S4G034200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13002.t1 is derived from g6812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2367678	2367887	.	-	.	Ledus.S6G006400
Ledus.S6	AUGUSTUS	transcript	2367678	2367887	.	-	.	transcript_id "Ledus.S6G006400.t1"; gene_id "Ledus.S6G006400"
Ledus.S6	AUGUSTUS	stop_codon	2367675	2367677	.	-	0	transcript_id "Ledus.S6G006400.t1"; gene_id "Ledus.S6G006400"
Ledus.S6	AUGUSTUS	CDS	2367678	2367887	0.99	-	0	transcript_id "Ledus.S6G006400.t1"; gene_id "Ledus.S6G006400"
Ledus.S6	AUGUSTUS	exon	2367678	2367887	.	-	.	transcript_id "Ledus.S6G006400.t1"; gene_id "Ledus.S6G006400"
Ledus.S6	AUGUSTUS	start_codon	2367885	2367887	.	-	0	transcript_id "Ledus.S6G006400.t1"; gene_id "Ledus.S6G006400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2931.t1 is derived from g366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4639573	4640926	.	+	.	Ledus.S1G035200
Ledus.S1	AUGUSTUS	transcript	4639573	4640926	.	+	.	transcript_id "Ledus.S1G035200.t1"; gene_id "Ledus.S1G035200"
Ledus.S1	AUGUSTUS	start_codon	4639573	4639575	.	+	0	transcript_id "Ledus.S1G035200.t1"; gene_id "Ledus.S1G035200"
Ledus.S1	AUGUSTUS	CDS	4639573	4639926	0.48	+	0	transcript_id "Ledus.S1G035200.t1"; gene_id "Ledus.S1G035200"
Ledus.S1	AUGUSTUS	exon	4639573	4639926	.	+	.	transcript_id "Ledus.S1G035200.t1"; gene_id "Ledus.S1G035200"
Ledus.S1	AUGUSTUS	intron	4639927	4640099	.	+	.	transcript_id "Ledus.S1G035200.t1"; gene_id "Ledus.S1G035200"
Ledus.S1	AUGUSTUS	CDS	4640100	4640214	0.48	+	0	transcript_id "Ledus.S1G035200.t1"; gene_id "Ledus.S1G035200"
Ledus.S1	AUGUSTUS	exon	4640100	4640214	.	+	.	transcript_id "Ledus.S1G035200.t1"; gene_id "Ledus.S1G035200"
Ledus.S1	AUGUSTUS	intron	4640215	4640282	.	+	.	transcript_id "Ledus.S1G035200.t1"; gene_id "Ledus.S1G035200"
Ledus.S1	AUGUSTUS	CDS	4640283	4640926	0.64	+	2	transcript_id "Ledus.S1G035200.t1"; gene_id "Ledus.S1G035200"
Ledus.S1	AUGUSTUS	exon	4640283	4640926	.	+	.	transcript_id "Ledus.S1G035200.t1"; gene_id "Ledus.S1G035200"
Ledus.S1	AUGUSTUS	stop_codon	4640927	4640929	.	+	0	transcript_id "Ledus.S1G035200.t1"; gene_id "Ledus.S1G035200"
# This transcript jg2660.t2 is derived from g93.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2661.t1 is derived from g94.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1374895	1375506	.	+	.	Ledus.S1G008200
Ledus.S1	AUGUSTUS	transcript	1374895	1375506	.	+	.	transcript_id "Ledus.S1G008200.t1"; gene_id "Ledus.S1G008200"
Ledus.S1	AUGUSTUS	start_codon	1374895	1374897	.	+	0	transcript_id "Ledus.S1G008200.t1"; gene_id "Ledus.S1G008200"
Ledus.S1	AUGUSTUS	CDS	1374895	1375070	0.32	+	0	transcript_id "Ledus.S1G008200.t1"; gene_id "Ledus.S1G008200"
Ledus.S1	AUGUSTUS	exon	1374895	1375070	.	+	.	transcript_id "Ledus.S1G008200.t1"; gene_id "Ledus.S1G008200"
Ledus.S1	AUGUSTUS	intron	1375071	1375343	.	+	.	transcript_id "Ledus.S1G008200.t1"; gene_id "Ledus.S1G008200"
Ledus.S1	AUGUSTUS	CDS	1375344	1375506	0.21	+	1	transcript_id "Ledus.S1G008200.t1"; gene_id "Ledus.S1G008200"
Ledus.S1	AUGUSTUS	exon	1375344	1375506	.	+	.	transcript_id "Ledus.S1G008200.t1"; gene_id "Ledus.S1G008200"
Ledus.S1	AUGUSTUS	stop_codon	1375507	1375509	.	+	0	transcript_id "Ledus.S1G008200.t1"; gene_id "Ledus.S1G008200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9263.t1 is derived from g10293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5662223	5664680	.	+	.	Ledus.S3G074000
Ledus.S3	AUGUSTUS	transcript	5662223	5664680	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	start_codon	5662223	5662225	.	+	0	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	CDS	5662223	5663137	0.99	+	0	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	exon	5662223	5663137	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	intron	5663138	5663228	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	CDS	5663229	5663324	1	+	0	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	exon	5663229	5663324	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	intron	5663325	5663461	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	CDS	5663462	5663581	1	+	0	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	exon	5663462	5663581	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	intron	5663582	5663667	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	CDS	5663668	5663834	0.88	+	0	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	exon	5663668	5663834	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	intron	5663835	5663997	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	CDS	5663998	5664104	0.75	+	1	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	exon	5663998	5664104	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	intron	5664105	5664202	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	CDS	5664203	5664207	1	+	2	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	exon	5664203	5664207	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	intron	5664208	5664375	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	CDS	5664376	5664452	1	+	0	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	exon	5664376	5664452	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	intron	5664453	5664598	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	CDS	5664599	5664680	1	+	1	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	exon	5664599	5664680	.	+	.	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
Ledus.S3	AUGUSTUS	stop_codon	5664681	5664683	.	+	0	transcript_id "Ledus.S3G074000.t1"; gene_id "Ledus.S3G074000"
# This transcript jg10491.t2 is derived from g11521.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10492.t1 is derived from g11522.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15602274	15603173	.	-	.	Ledus.S3G196900
Ledus.S3	AUGUSTUS	transcript	15602274	15603173	.	-	.	transcript_id "Ledus.S3G196900.t1"; gene_id "Ledus.S3G196900"
Ledus.S3	AUGUSTUS	stop_codon	15602271	15602273	.	-	0	transcript_id "Ledus.S3G196900.t1"; gene_id "Ledus.S3G196900"
Ledus.S3	AUGUSTUS	CDS	15602274	15602589	0.9	-	1	transcript_id "Ledus.S3G196900.t1"; gene_id "Ledus.S3G196900"
Ledus.S3	AUGUSTUS	exon	15602274	15602589	.	-	.	transcript_id "Ledus.S3G196900.t1"; gene_id "Ledus.S3G196900"
Ledus.S3	AUGUSTUS	intron	15602590	15602937	.	-	.	transcript_id "Ledus.S3G196900.t1"; gene_id "Ledus.S3G196900"
Ledus.S3	AUGUSTUS	CDS	15602938	15603014	0.51	-	0	transcript_id "Ledus.S3G196900.t1"; gene_id "Ledus.S3G196900"
Ledus.S3	AUGUSTUS	exon	15602938	15603014	.	-	.	transcript_id "Ledus.S3G196900.t1"; gene_id "Ledus.S3G196900"
Ledus.S3	AUGUSTUS	intron	15603015	15603098	.	-	.	transcript_id "Ledus.S3G196900.t1"; gene_id "Ledus.S3G196900"
Ledus.S3	AUGUSTUS	CDS	15603099	15603173	0.8	-	0	transcript_id "Ledus.S3G196900.t1"; gene_id "Ledus.S3G196900"
Ledus.S3	AUGUSTUS	exon	15603099	15603173	.	-	.	transcript_id "Ledus.S3G196900.t1"; gene_id "Ledus.S3G196900"
Ledus.S3	AUGUSTUS	start_codon	15603171	15603173	.	-	0	transcript_id "Ledus.S3G196900.t1"; gene_id "Ledus.S3G196900"
# This transcript jg8204.t2 is derived from g12875.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg8204.t3 is derived from g12875.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8205.t1 is derived from g12876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9844678	9845982	.	-	.	Ledus.S5G098300
Ledus.S5	AUGUSTUS	transcript	9844678	9845982	.	-	.	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	stop_codon	9844675	9844677	.	-	0	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	CDS	9844678	9844977	1	-	0	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	exon	9844678	9844977	.	-	.	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	intron	9844978	9845066	.	-	.	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	CDS	9845067	9845272	1	-	2	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	exon	9845067	9845272	.	-	.	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	intron	9845273	9845369	.	-	.	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	CDS	9845370	9845564	0.98	-	2	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	exon	9845370	9845564	.	-	.	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	intron	9845565	9845675	.	-	.	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	CDS	9845676	9845982	0.57	-	0	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	exon	9845676	9845982	.	-	.	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
Ledus.S5	AUGUSTUS	start_codon	9845980	9845982	.	-	0	transcript_id "Ledus.S5G098300.t1"; gene_id "Ledus.S5G098300"
# This transcript jg3051.t2 is derived from g486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3052.t1 is derived from g487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5526702	5528122	.	-	.	Ledus.S1G047300
Ledus.S1	AUGUSTUS	transcript	5526702	5528122	.	-	.	transcript_id "Ledus.S1G047300.t1"; gene_id "Ledus.S1G047300"
Ledus.S1	AUGUSTUS	stop_codon	5526699	5526701	.	-	0	transcript_id "Ledus.S1G047300.t1"; gene_id "Ledus.S1G047300"
Ledus.S1	AUGUSTUS	CDS	5526702	5527752	0.81	-	1	transcript_id "Ledus.S1G047300.t1"; gene_id "Ledus.S1G047300"
Ledus.S1	AUGUSTUS	exon	5526702	5527752	.	-	.	transcript_id "Ledus.S1G047300.t1"; gene_id "Ledus.S1G047300"
Ledus.S1	AUGUSTUS	intron	5527753	5527919	.	-	.	transcript_id "Ledus.S1G047300.t1"; gene_id "Ledus.S1G047300"
Ledus.S1	AUGUSTUS	CDS	5527920	5528122	0.8	-	0	transcript_id "Ledus.S1G047300.t1"; gene_id "Ledus.S1G047300"
Ledus.S1	AUGUSTUS	exon	5527920	5528122	.	-	.	transcript_id "Ledus.S1G047300.t1"; gene_id "Ledus.S1G047300"
Ledus.S1	AUGUSTUS	start_codon	5528120	5528122	.	-	0	transcript_id "Ledus.S1G047300.t1"; gene_id "Ledus.S1G047300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg846.t1 is derived from g7707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5650751	5653702	.	+	.	Ledus.S2G072800
Ledus.S2	AUGUSTUS	transcript	5650751	5653702	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	start_codon	5650751	5650753	.	+	0	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	CDS	5650751	5651040	0.78	+	0	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	exon	5650751	5651040	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	intron	5651041	5651129	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	CDS	5651130	5651244	0.5	+	1	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	exon	5651130	5651244	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	intron	5651245	5651306	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	CDS	5651307	5651463	0.91	+	0	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	exon	5651307	5651463	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	intron	5651464	5651591	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	CDS	5651592	5651676	1	+	2	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	exon	5651592	5651676	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	intron	5651677	5651794	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	CDS	5651795	5652507	0.76	+	1	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	exon	5651795	5652507	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	intron	5652508	5652837	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	CDS	5652838	5652861	0.59	+	2	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	exon	5652838	5652861	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	intron	5652862	5652988	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	CDS	5652989	5653338	0.72	+	2	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	exon	5652989	5653338	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	intron	5653339	5653462	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	CDS	5653463	5653702	0.93	+	0	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	exon	5653463	5653702	.	+	.	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
Ledus.S2	AUGUSTUS	stop_codon	5653703	5653705	.	+	0	transcript_id "Ledus.S2G072800.t1"; gene_id "Ledus.S2G072800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10137.t1 is derived from g11167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12994753	12995322	.	+	.	Ledus.S3G161400
Ledus.S3	AUGUSTUS	transcript	12994753	12995322	.	+	.	transcript_id "Ledus.S3G161400.t1"; gene_id "Ledus.S3G161400"
Ledus.S3	AUGUSTUS	start_codon	12994753	12994755	.	+	0	transcript_id "Ledus.S3G161400.t1"; gene_id "Ledus.S3G161400"
Ledus.S3	AUGUSTUS	CDS	12994753	12995322	0.21	+	0	transcript_id "Ledus.S3G161400.t1"; gene_id "Ledus.S3G161400"
Ledus.S3	AUGUSTUS	exon	12994753	12995322	.	+	.	transcript_id "Ledus.S3G161400.t1"; gene_id "Ledus.S3G161400"
Ledus.S3	AUGUSTUS	stop_codon	12995323	12995325	.	+	0	transcript_id "Ledus.S3G161400.t1"; gene_id "Ledus.S3G161400"
# This transcript jg5504.t2 is derived from g2943.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg5505.t1 is derived from g2944.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24656425	24658123	.	+	.	Ledus.S1G292600
Ledus.S1	AUGUSTUS	transcript	24656842	24658123	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	start_codon	24656842	24656844	.	+	0	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24656842	24656910	1	+	0	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24656842	24656910	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24656911	24657002	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24657003	24657095	1	+	0	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24657003	24657095	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24657096	24657163	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24657164	24657290	1	+	0	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24657164	24657290	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24657291	24657386	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24657387	24657484	1	+	2	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24657387	24657484	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24657485	24657561	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24657562	24657642	1	+	0	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24657562	24657642	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24657643	24657719	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24657720	24657805	1	+	0	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24657720	24657805	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24657806	24657885	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24657886	24658123	0.73	+	1	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24657886	24658123	.	+	.	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	stop_codon	24658124	24658126	.	+	0	transcript_id "Ledus.S1G292600.t1"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	transcript	24656425	24658123	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	start_codon	24656425	24656427	.	+	0	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24656425	24656646	0.65	+	0	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24656425	24656646	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24656647	24656769	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24656770	24656910	1	+	0	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24656770	24656910	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24656911	24657002	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24657003	24657095	1	+	0	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24657003	24657095	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24657096	24657163	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24657164	24657290	1	+	0	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24657164	24657290	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24657291	24657386	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24657387	24657484	1	+	2	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24657387	24657484	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24657485	24657561	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24657562	24657642	1	+	0	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24657562	24657642	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24657643	24657719	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24657720	24657805	1	+	0	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24657720	24657805	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24657806	24657885	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24657886	24658123	0.76	+	1	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24657886	24658123	.	+	.	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	stop_codon	24658124	24658126	.	+	0	transcript_id "Ledus.S1G292600.t2"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	transcript	24656425	24656754	.	+	.	transcript_id "Ledus.S1G292600.t3"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	start_codon	24656425	24656427	.	+	0	transcript_id "Ledus.S1G292600.t3"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24656425	24656646	0.7	+	0	transcript_id "Ledus.S1G292600.t3"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24656425	24656646	.	+	.	transcript_id "Ledus.S1G292600.t3"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	intron	24656647	24656745	.	+	.	transcript_id "Ledus.S1G292600.t3"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	CDS	24656746	24656754	1	+	0	transcript_id "Ledus.S1G292600.t3"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	exon	24656746	24656754	.	+	.	transcript_id "Ledus.S1G292600.t3"; gene_id "Ledus.S1G292600"
Ledus.S1	AUGUSTUS	stop_codon	24656755	24656757	.	+	0	transcript_id "Ledus.S1G292600.t3"; gene_id "Ledus.S1G292600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11385.t1 is derived from g5003.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3947222	3947575	.	+	.	Ledus.S4G054100
Ledus.S4	AUGUSTUS	transcript	3947222	3947575	.	+	.	transcript_id "Ledus.S4G054100.t1"; gene_id "Ledus.S4G054100"
Ledus.S4	AUGUSTUS	start_codon	3947222	3947224	.	+	0	transcript_id "Ledus.S4G054100.t1"; gene_id "Ledus.S4G054100"
Ledus.S4	AUGUSTUS	CDS	3947222	3947575	0.67	+	0	transcript_id "Ledus.S4G054100.t1"; gene_id "Ledus.S4G054100"
Ledus.S4	AUGUSTUS	exon	3947222	3947575	.	+	.	transcript_id "Ledus.S4G054100.t1"; gene_id "Ledus.S4G054100"
Ledus.S4	AUGUSTUS	stop_codon	3947576	3947578	.	+	0	transcript_id "Ledus.S4G054100.t1"; gene_id "Ledus.S4G054100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5648.t1 is derived from g3087.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25564737	25565424	.	-	.	Ledus.S1G306900
Ledus.S1	AUGUSTUS	transcript	25564737	25565424	.	-	.	transcript_id "Ledus.S1G306900.t1"; gene_id "Ledus.S1G306900"
Ledus.S1	AUGUSTUS	stop_codon	25564734	25564736	.	-	0	transcript_id "Ledus.S1G306900.t1"; gene_id "Ledus.S1G306900"
Ledus.S1	AUGUSTUS	CDS	25564737	25564774	0.53	-	2	transcript_id "Ledus.S1G306900.t1"; gene_id "Ledus.S1G306900"
Ledus.S1	AUGUSTUS	exon	25564737	25564774	.	-	.	transcript_id "Ledus.S1G306900.t1"; gene_id "Ledus.S1G306900"
Ledus.S1	AUGUSTUS	intron	25564775	25564867	.	-	.	transcript_id "Ledus.S1G306900.t1"; gene_id "Ledus.S1G306900"
Ledus.S1	AUGUSTUS	CDS	25564868	25565051	1	-	0	transcript_id "Ledus.S1G306900.t1"; gene_id "Ledus.S1G306900"
Ledus.S1	AUGUSTUS	exon	25564868	25565051	.	-	.	transcript_id "Ledus.S1G306900.t1"; gene_id "Ledus.S1G306900"
Ledus.S1	AUGUSTUS	intron	25565052	25565370	.	-	.	transcript_id "Ledus.S1G306900.t1"; gene_id "Ledus.S1G306900"
Ledus.S1	AUGUSTUS	CDS	25565371	25565424	0.63	-	0	transcript_id "Ledus.S1G306900.t1"; gene_id "Ledus.S1G306900"
Ledus.S1	AUGUSTUS	exon	25565371	25565424	.	-	.	transcript_id "Ledus.S1G306900.t1"; gene_id "Ledus.S1G306900"
Ledus.S1	AUGUSTUS	start_codon	25565422	25565424	.	-	0	transcript_id "Ledus.S1G306900.t1"; gene_id "Ledus.S1G306900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3003.t1 is derived from g438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5227175	5229680	.	+	.	Ledus.S1G042400
Ledus.S1	AUGUSTUS	transcript	5227175	5229680	.	+	.	transcript_id "Ledus.S1G042400.t1"; gene_id "Ledus.S1G042400"
Ledus.S1	AUGUSTUS	start_codon	5227175	5227177	.	+	0	transcript_id "Ledus.S1G042400.t1"; gene_id "Ledus.S1G042400"
Ledus.S1	AUGUSTUS	CDS	5227175	5227874	0.97	+	0	transcript_id "Ledus.S1G042400.t1"; gene_id "Ledus.S1G042400"
Ledus.S1	AUGUSTUS	exon	5227175	5227874	.	+	.	transcript_id "Ledus.S1G042400.t1"; gene_id "Ledus.S1G042400"
Ledus.S1	AUGUSTUS	intron	5227875	5228847	.	+	.	transcript_id "Ledus.S1G042400.t1"; gene_id "Ledus.S1G042400"
Ledus.S1	AUGUSTUS	CDS	5228848	5229291	1	+	2	transcript_id "Ledus.S1G042400.t1"; gene_id "Ledus.S1G042400"
Ledus.S1	AUGUSTUS	exon	5228848	5229291	.	+	.	transcript_id "Ledus.S1G042400.t1"; gene_id "Ledus.S1G042400"
Ledus.S1	AUGUSTUS	intron	5229292	5229450	.	+	.	transcript_id "Ledus.S1G042400.t1"; gene_id "Ledus.S1G042400"
Ledus.S1	AUGUSTUS	CDS	5229451	5229680	1	+	2	transcript_id "Ledus.S1G042400.t1"; gene_id "Ledus.S1G042400"
Ledus.S1	AUGUSTUS	exon	5229451	5229680	.	+	.	transcript_id "Ledus.S1G042400.t1"; gene_id "Ledus.S1G042400"
Ledus.S1	AUGUSTUS	stop_codon	5229681	5229683	.	+	0	transcript_id "Ledus.S1G042400.t1"; gene_id "Ledus.S1G042400"
# This transcript jg6047.t2 is derived from g3490.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6048.t1 is derived from g3491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28679497	28681673	.	+	.	Ledus.S1G346900
Ledus.S1	AUGUSTUS	transcript	28679497	28681673	.	+	.	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	start_codon	28679497	28679499	.	+	0	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	CDS	28679497	28679742	0.84	+	0	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	exon	28679497	28679742	.	+	.	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	intron	28679743	28679857	.	+	.	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	CDS	28679858	28680313	0.99	+	0	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	exon	28679858	28680313	.	+	.	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	intron	28680314	28680513	.	+	.	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	CDS	28680514	28681209	0.72	+	0	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	exon	28680514	28681209	.	+	.	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	intron	28681210	28681346	.	+	.	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	CDS	28681347	28681673	0.88	+	0	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	exon	28681347	28681673	.	+	.	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
Ledus.S1	AUGUSTUS	stop_codon	28681674	28681676	.	+	0	transcript_id "Ledus.S1G346900.t1"; gene_id "Ledus.S1G346900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6695.t1 is derived from g4138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33331949	33333001	.	-	.	Ledus.S1G411600
Ledus.S1	AUGUSTUS	transcript	33331949	33333001	.	-	.	transcript_id "Ledus.S1G411600.t1"; gene_id "Ledus.S1G411600"
Ledus.S1	AUGUSTUS	stop_codon	33331946	33331948	.	-	0	transcript_id "Ledus.S1G411600.t1"; gene_id "Ledus.S1G411600"
Ledus.S1	AUGUSTUS	CDS	33331949	33333001	1	-	0	transcript_id "Ledus.S1G411600.t1"; gene_id "Ledus.S1G411600"
Ledus.S1	AUGUSTUS	exon	33331949	33333001	.	-	.	transcript_id "Ledus.S1G411600.t1"; gene_id "Ledus.S1G411600"
Ledus.S1	AUGUSTUS	start_codon	33332999	33333001	.	-	0	transcript_id "Ledus.S1G411600.t1"; gene_id "Ledus.S1G411600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12459.t1 is derived from g6080.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12095242	12096343	.	-	.	Ledus.S4G161500
Ledus.S4	AUGUSTUS	transcript	12095242	12096343	.	-	.	transcript_id "Ledus.S4G161500.t1"; gene_id "Ledus.S4G161500"
Ledus.S4	AUGUSTUS	stop_codon	12095239	12095241	.	-	0	transcript_id "Ledus.S4G161500.t1"; gene_id "Ledus.S4G161500"
Ledus.S4	AUGUSTUS	CDS	12095242	12095334	1	-	0	transcript_id "Ledus.S4G161500.t1"; gene_id "Ledus.S4G161500"
Ledus.S4	AUGUSTUS	exon	12095242	12095334	.	-	.	transcript_id "Ledus.S4G161500.t1"; gene_id "Ledus.S4G161500"
Ledus.S4	AUGUSTUS	intron	12095335	12095494	.	-	.	transcript_id "Ledus.S4G161500.t1"; gene_id "Ledus.S4G161500"
Ledus.S4	AUGUSTUS	CDS	12095495	12096343	0.84	-	0	transcript_id "Ledus.S4G161500.t1"; gene_id "Ledus.S4G161500"
Ledus.S4	AUGUSTUS	exon	12095495	12096343	.	-	.	transcript_id "Ledus.S4G161500.t1"; gene_id "Ledus.S4G161500"
Ledus.S4	AUGUSTUS	start_codon	12096341	12096343	.	-	0	transcript_id "Ledus.S4G161500.t1"; gene_id "Ledus.S4G161500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9766.t1 is derived from g10796.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9662354	9665048	.	-	.	Ledus.S3G124300
Ledus.S3	AUGUSTUS	transcript	9662354	9665048	.	-	.	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	stop_codon	9662351	9662353	.	-	0	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	CDS	9662354	9662518	0.99	-	0	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	exon	9662354	9662518	.	-	.	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	intron	9662519	9662679	.	-	.	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	CDS	9662680	9662777	1	-	2	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	exon	9662680	9662777	.	-	.	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	intron	9662778	9663007	.	-	.	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	CDS	9663008	9663099	1	-	1	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	exon	9663008	9663099	.	-	.	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	intron	9663100	9663227	.	-	.	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	CDS	9663228	9663349	1	-	0	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	exon	9663228	9663349	.	-	.	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	intron	9663350	9663439	.	-	.	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	CDS	9663440	9663545	1	-	1	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	exon	9663440	9663545	.	-	.	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	intron	9663546	9664230	.	-	.	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	CDS	9664231	9665048	0.69	-	0	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	exon	9664231	9665048	.	-	.	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
Ledus.S3	AUGUSTUS	start_codon	9665046	9665048	.	-	0	transcript_id "Ledus.S3G124300.t1"; gene_id "Ledus.S3G124300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12298.t1 is derived from g5918.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11100518	11101072	.	+	.	Ledus.S4G145400
Ledus.S4	AUGUSTUS	transcript	11100518	11101072	.	+	.	transcript_id "Ledus.S4G145400.t1"; gene_id "Ledus.S4G145400"
Ledus.S4	AUGUSTUS	start_codon	11100518	11100520	.	+	0	transcript_id "Ledus.S4G145400.t1"; gene_id "Ledus.S4G145400"
Ledus.S4	AUGUSTUS	CDS	11100518	11101072	0.95	+	0	transcript_id "Ledus.S4G145400.t1"; gene_id "Ledus.S4G145400"
Ledus.S4	AUGUSTUS	exon	11100518	11101072	.	+	.	transcript_id "Ledus.S4G145400.t1"; gene_id "Ledus.S4G145400"
Ledus.S4	AUGUSTUS	stop_codon	11101073	11101075	.	+	0	transcript_id "Ledus.S4G145400.t1"; gene_id "Ledus.S4G145400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11174.t1 is derived from g4792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2382231	2394205	.	+	.	Ledus.S4G033000
Ledus.S4	AUGUSTUS	transcript	2382231	2394205	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	start_codon	2382231	2382233	.	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2382231	2382433	0.91	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2382231	2382433	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2382434	2382528	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2382529	2382581	1	+	1	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2382529	2382581	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2382582	2382742	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2382743	2382809	1	+	2	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2382743	2382809	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2382810	2382921	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2382922	2383010	0.62	+	1	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2382922	2383010	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2383011	2383102	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2383103	2383227	1	+	2	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2383103	2383227	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2383228	2383395	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2383396	2383467	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2383396	2383467	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2383468	2383640	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2383641	2383715	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2383641	2383715	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2383716	2383877	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2383878	2384037	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2383878	2384037	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2384038	2384133	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2384134	2384248	1	+	2	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2384134	2384248	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2384249	2384505	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2384506	2384551	1	+	1	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2384506	2384551	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2384552	2384644	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2384645	2384767	0.87	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2384645	2384767	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2384768	2384891	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2384892	2384969	0.98	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2384892	2384969	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2384970	2386202	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2386203	2386340	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2386203	2386340	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2386341	2386555	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2386556	2386711	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2386556	2386711	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2386712	2386850	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2386851	2386901	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2386851	2386901	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2386902	2386993	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2386994	2387076	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2386994	2387076	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2387077	2387187	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2387188	2387284	1	+	1	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2387188	2387284	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2387285	2387405	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2387406	2387521	0.96	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2387406	2387521	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2387522	2387620	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2387621	2387656	1	+	1	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2387621	2387656	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2387657	2387739	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2387740	2387802	0.84	+	1	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2387740	2387802	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2387803	2388118	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2388119	2388131	0.34	+	1	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2388119	2388131	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2388132	2388442	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2388443	2388448	0.9	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2388443	2388448	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2388449	2388787	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2388788	2388921	0.59	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2388788	2388921	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2388922	2389014	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2389015	2389074	0.85	+	1	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2389015	2389074	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2389075	2389405	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2389406	2389427	0.93	+	1	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2389406	2389427	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2389428	2389522	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2389523	2389605	0.86	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2389523	2389605	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2389606	2389917	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2389918	2389924	0.64	+	1	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2389918	2389924	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2389925	2390104	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2390105	2390143	0.51	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2390105	2390143	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2390144	2390290	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2390291	2390353	0.86	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2390291	2390353	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2390354	2390500	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2390501	2390573	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2390501	2390573	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2390574	2390740	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2390741	2391039	0.8	+	2	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2390741	2391039	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2391040	2391152	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2391153	2391218	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2391153	2391218	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2391219	2391348	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2391349	2391535	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2391349	2391535	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2391536	2391789	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2391790	2392199	0.98	+	2	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2391790	2392199	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2392200	2392283	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2392284	2392475	0.97	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2392284	2392475	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2392476	2392580	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2392581	2392641	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2392581	2392641	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2392642	2392812	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2392813	2392896	1	+	2	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2392813	2392896	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2392897	2393082	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2393083	2393132	1	+	2	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2393083	2393132	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2393133	2393225	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2393226	2393303	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2393226	2393303	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2393304	2393401	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2393402	2393457	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2393402	2393457	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2393458	2393532	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2393533	2393627	1	+	1	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2393533	2393627	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2393628	2393735	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2393736	2393845	1	+	2	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2393736	2393845	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2393846	2393933	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2393934	2393993	1	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2393934	2393993	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	intron	2393994	2394118	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	CDS	2394119	2394205	0.61	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	exon	2394119	2394205	.	+	.	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
Ledus.S4	AUGUSTUS	stop_codon	2394206	2394208	.	+	0	transcript_id "Ledus.S4G033000.t1"; gene_id "Ledus.S4G033000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12175.t1 is derived from g5794.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10151550	10153365	.	-	.	Ledus.S4G133100
Ledus.S4	AUGUSTUS	transcript	10151550	10153365	.	-	.	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	stop_codon	10151547	10151549	.	-	0	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	CDS	10151550	10151879	0.98	-	0	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	exon	10151550	10151879	.	-	.	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	intron	10151880	10152015	.	-	.	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	CDS	10152016	10152171	1	-	0	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	exon	10152016	10152171	.	-	.	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	intron	10152172	10152395	.	-	.	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	CDS	10152396	10153044	0.48	-	1	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	exon	10152396	10153044	.	-	.	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	intron	10153045	10153180	.	-	.	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	CDS	10153181	10153365	0.69	-	0	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	exon	10153181	10153365	.	-	.	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
Ledus.S4	AUGUSTUS	start_codon	10153363	10153365	.	-	0	transcript_id "Ledus.S4G133100.t1"; gene_id "Ledus.S4G133100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8353.t1 is derived from g13025.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10962487	10965654	.	-	.	Ledus.S5G113100
Ledus.S5	AUGUSTUS	transcript	10962487	10965654	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	stop_codon	10962484	10962486	.	-	0	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	CDS	10962487	10962663	0.97	-	0	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	exon	10962487	10962663	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	intron	10962664	10962787	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	CDS	10962788	10962916	1	-	0	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	exon	10962788	10962916	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	intron	10962917	10963030	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	CDS	10963031	10963186	1	-	0	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	exon	10963031	10963186	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	intron	10963187	10963285	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	CDS	10963286	10963401	1	-	2	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	exon	10963286	10963401	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	intron	10963402	10963490	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	CDS	10963491	10963671	1	-	0	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	exon	10963491	10963671	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	intron	10963672	10963779	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	CDS	10963780	10963878	0.57	-	0	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	exon	10963780	10963878	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	intron	10963879	10963980	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	CDS	10963981	10964074	0.6	-	1	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	exon	10963981	10964074	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	intron	10964075	10964202	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	CDS	10964203	10964327	1	-	0	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	exon	10964203	10964327	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	intron	10964328	10964418	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	CDS	10964419	10964586	1	-	0	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	exon	10964419	10964586	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	intron	10964587	10964686	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	CDS	10964687	10964836	1	-	0	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	exon	10964687	10964836	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	intron	10964837	10964939	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	CDS	10964940	10965083	1	-	0	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	exon	10964940	10965083	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	intron	10965084	10965225	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	CDS	10965226	10965654	0.98	-	0	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	exon	10965226	10965654	.	-	.	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
Ledus.S5	AUGUSTUS	start_codon	10965652	10965654	.	-	0	transcript_id "Ledus.S5G113100.t1"; gene_id "Ledus.S5G113100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9474.t1 is derived from g10504.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7209757	7210734	.	-	.	Ledus.S3G095100
Ledus.S3	AUGUSTUS	transcript	7209757	7210734	.	-	.	transcript_id "Ledus.S3G095100.t1"; gene_id "Ledus.S3G095100"
Ledus.S3	AUGUSTUS	stop_codon	7209754	7209756	.	-	0	transcript_id "Ledus.S3G095100.t1"; gene_id "Ledus.S3G095100"
Ledus.S3	AUGUSTUS	CDS	7209757	7210107	0.41	-	0	transcript_id "Ledus.S3G095100.t1"; gene_id "Ledus.S3G095100"
Ledus.S3	AUGUSTUS	exon	7209757	7210107	.	-	.	transcript_id "Ledus.S3G095100.t1"; gene_id "Ledus.S3G095100"
Ledus.S3	AUGUSTUS	intron	7210108	7210195	.	-	.	transcript_id "Ledus.S3G095100.t1"; gene_id "Ledus.S3G095100"
Ledus.S3	AUGUSTUS	CDS	7210196	7210219	0.27	-	0	transcript_id "Ledus.S3G095100.t1"; gene_id "Ledus.S3G095100"
Ledus.S3	AUGUSTUS	exon	7210196	7210219	.	-	.	transcript_id "Ledus.S3G095100.t1"; gene_id "Ledus.S3G095100"
Ledus.S3	AUGUSTUS	intron	7210220	7210647	.	-	.	transcript_id "Ledus.S3G095100.t1"; gene_id "Ledus.S3G095100"
Ledus.S3	AUGUSTUS	CDS	7210648	7210734	0.39	-	0	transcript_id "Ledus.S3G095100.t1"; gene_id "Ledus.S3G095100"
Ledus.S3	AUGUSTUS	exon	7210648	7210734	.	-	.	transcript_id "Ledus.S3G095100.t1"; gene_id "Ledus.S3G095100"
Ledus.S3	AUGUSTUS	start_codon	7210732	7210734	.	-	0	transcript_id "Ledus.S3G095100.t1"; gene_id "Ledus.S3G095100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2859.t1 is derived from g293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4224169	4226761	.	+	.	Ledus.S1G028000
Ledus.S1	AUGUSTUS	transcript	4224169	4226761	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	start_codon	4224169	4224171	.	+	0	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	CDS	4224169	4224964	0.45	+	0	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	exon	4224169	4224964	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	intron	4224965	4225092	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	CDS	4225093	4225165	1	+	2	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	exon	4225093	4225165	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	intron	4225166	4225255	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	CDS	4225256	4225329	0.81	+	1	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	exon	4225256	4225329	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	intron	4225330	4225434	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	CDS	4225435	4225520	0.81	+	2	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	exon	4225435	4225520	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	intron	4225521	4225611	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	CDS	4225612	4225695	1	+	0	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	exon	4225612	4225695	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	intron	4225696	4225865	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	CDS	4225866	4225950	1	+	0	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	exon	4225866	4225950	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	intron	4225951	4226128	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	CDS	4226129	4226208	0.76	+	2	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	exon	4226129	4226208	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	intron	4226209	4226318	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	CDS	4226319	4226420	1	+	0	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	exon	4226319	4226420	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	intron	4226421	4226517	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	CDS	4226518	4226576	1	+	0	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	exon	4226518	4226576	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	intron	4226577	4226664	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	CDS	4226665	4226761	1	+	1	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	exon	4226665	4226761	.	+	.	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
Ledus.S1	AUGUSTUS	stop_codon	4226762	4226764	.	+	0	transcript_id "Ledus.S1G028000.t1"; gene_id "Ledus.S1G028000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12766.t1 is derived from g6388.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14365495	14368156	.	-	.	Ledus.S4G192200
Ledus.S4	AUGUSTUS	transcript	14365495	14368156	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	stop_codon	14365492	14365494	.	-	0	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	CDS	14365495	14365737	0.39	-	0	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	exon	14365495	14365737	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	intron	14365738	14365842	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	CDS	14365843	14365915	1	-	1	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	exon	14365843	14365915	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	intron	14365916	14365982	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	CDS	14365983	14366032	0.99	-	0	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	exon	14365983	14366032	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	intron	14366033	14366216	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	CDS	14366217	14367306	0.51	-	1	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	exon	14366217	14367306	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	intron	14367307	14367812	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	CDS	14367813	14367912	0.98	-	2	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	exon	14367813	14367912	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	intron	14367913	14368017	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	CDS	14368018	14368060	0.97	-	0	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	exon	14368018	14368060	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	intron	14368061	14368135	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	CDS	14368136	14368156	0.8	-	0	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	exon	14368136	14368156	.	-	.	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
Ledus.S4	AUGUSTUS	start_codon	14368154	14368156	.	-	0	transcript_id "Ledus.S4G192200.t1"; gene_id "Ledus.S4G192200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10640.t1 is derived from g11670.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16821449	16824481	.	-	.	Ledus.S3G211700
Ledus.S3	AUGUSTUS	transcript	16821449	16824481	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	stop_codon	16821446	16821448	.	-	0	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16821449	16821757	0.99	-	0	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16821449	16821757	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16821758	16821842	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16821843	16821997	1	-	2	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16821843	16821997	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16821998	16822083	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16822084	16822225	0.97	-	0	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16822084	16822225	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16822226	16822326	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16822327	16822442	0.99	-	2	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16822327	16822442	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16822443	16822530	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16822531	16822608	1	-	2	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16822531	16822608	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16822609	16822801	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16822802	16822865	0.86	-	0	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16822802	16822865	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16822866	16823319	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16823320	16823522	0.56	-	2	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16823320	16823522	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16823523	16823613	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16823614	16824481	0.91	-	0	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16823614	16824481	.	-	.	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	start_codon	16824479	16824481	.	-	0	transcript_id "Ledus.S3G211700.t1"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	transcript	16821449	16824481	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	stop_codon	16821446	16821448	.	-	0	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16821449	16821757	0.99	-	0	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16821449	16821757	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16821758	16821842	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16821843	16821997	1	-	2	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16821843	16821997	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16821998	16822083	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16822084	16822225	0.95	-	0	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16822084	16822225	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16822226	16822326	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16822327	16822442	1	-	2	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16822327	16822442	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16822443	16822530	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16822531	16822600	1	-	0	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16822531	16822600	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16822601	16822801	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16822802	16822935	0.63	-	2	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16822802	16822935	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16822936	16823228	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16823229	16823522	0.67	-	2	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16823229	16823522	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	intron	16823523	16823613	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	CDS	16823614	16824481	0.9	-	0	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	exon	16823614	16824481	.	-	.	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
Ledus.S3	AUGUSTUS	start_codon	16824479	16824481	.	-	0	transcript_id "Ledus.S3G211700.t2"; gene_id "Ledus.S3G211700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4784.t1 is derived from g2222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19758884	19760048	.	-	.	Ledus.S1G220500
Ledus.S1	AUGUSTUS	transcript	19758884	19760048	.	-	.	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	stop_codon	19758881	19758883	.	-	0	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	CDS	19758884	19758886	1	-	0	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	exon	19758884	19758886	.	-	.	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	intron	19758887	19759125	.	-	.	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	CDS	19759126	19759132	0.78	-	1	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	exon	19759126	19759132	.	-	.	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	intron	19759133	19759276	.	-	.	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	CDS	19759277	19759422	0.68	-	0	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	exon	19759277	19759422	.	-	.	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	intron	19759423	19759495	.	-	.	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	CDS	19759496	19759632	1	-	2	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	exon	19759496	19759632	.	-	.	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	intron	19759633	19759723	.	-	.	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	CDS	19759724	19760048	0.53	-	0	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	exon	19759724	19760048	.	-	.	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
Ledus.S1	AUGUSTUS	start_codon	19760046	19760048	.	-	0	transcript_id "Ledus.S1G220500.t1"; gene_id "Ledus.S1G220500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5569.t1 is derived from g3008.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25176844	25178724	.	+	.	Ledus.S1G299000
Ledus.S1	AUGUSTUS	transcript	25176844	25177202	.	+	.	transcript_id "Ledus.S1G299000.t1"; gene_id "Ledus.S1G299000"
Ledus.S1	AUGUSTUS	start_codon	25176844	25176846	.	+	0	transcript_id "Ledus.S1G299000.t1"; gene_id "Ledus.S1G299000"
Ledus.S1	AUGUSTUS	CDS	25176844	25177100	0.46	+	0	transcript_id "Ledus.S1G299000.t1"; gene_id "Ledus.S1G299000"
Ledus.S1	AUGUSTUS	exon	25176844	25177100	.	+	.	transcript_id "Ledus.S1G299000.t1"; gene_id "Ledus.S1G299000"
Ledus.S1	AUGUSTUS	intron	25177101	25177183	.	+	.	transcript_id "Ledus.S1G299000.t1"; gene_id "Ledus.S1G299000"
Ledus.S1	AUGUSTUS	CDS	25177184	25177202	0.47	+	1	transcript_id "Ledus.S1G299000.t1"; gene_id "Ledus.S1G299000"
Ledus.S1	AUGUSTUS	exon	25177184	25177202	.	+	.	transcript_id "Ledus.S1G299000.t1"; gene_id "Ledus.S1G299000"
Ledus.S1	AUGUSTUS	stop_codon	25177203	25177205	.	+	0	transcript_id "Ledus.S1G299000.t1"; gene_id "Ledus.S1G299000"
Ledus.S1	AUGUSTUS	transcript	25176844	25178724	.	+	.	transcript_id "Ledus.S1G299000.t2"; gene_id "Ledus.S1G299000"
Ledus.S1	AUGUSTUS	start_codon	25176844	25176846	.	+	0	transcript_id "Ledus.S1G299000.t2"; gene_id "Ledus.S1G299000"
Ledus.S1	AUGUSTUS	CDS	25176844	25178724	0.93	+	0	transcript_id "Ledus.S1G299000.t2"; gene_id "Ledus.S1G299000"
Ledus.S1	AUGUSTUS	exon	25176844	25178724	.	+	.	transcript_id "Ledus.S1G299000.t2"; gene_id "Ledus.S1G299000"
Ledus.S1	AUGUSTUS	stop_codon	25178725	25178727	.	+	0	transcript_id "Ledus.S1G299000.t2"; gene_id "Ledus.S1G299000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10019.t1 is derived from g11049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11909695	11910216	.	-	.	Ledus.S3G149600
Ledus.S3	AUGUSTUS	transcript	11909695	11910216	.	-	.	transcript_id "Ledus.S3G149600.t1"; gene_id "Ledus.S3G149600"
Ledus.S3	AUGUSTUS	stop_codon	11909692	11909694	.	-	0	transcript_id "Ledus.S3G149600.t1"; gene_id "Ledus.S3G149600"
Ledus.S3	AUGUSTUS	CDS	11909695	11910034	0.41	-	1	transcript_id "Ledus.S3G149600.t1"; gene_id "Ledus.S3G149600"
Ledus.S3	AUGUSTUS	exon	11909695	11910034	.	-	.	transcript_id "Ledus.S3G149600.t1"; gene_id "Ledus.S3G149600"
Ledus.S3	AUGUSTUS	intron	11910035	11910127	.	-	.	transcript_id "Ledus.S3G149600.t1"; gene_id "Ledus.S3G149600"
Ledus.S3	AUGUSTUS	CDS	11910128	11910216	0.33	-	0	transcript_id "Ledus.S3G149600.t1"; gene_id "Ledus.S3G149600"
Ledus.S3	AUGUSTUS	exon	11910128	11910216	.	-	.	transcript_id "Ledus.S3G149600.t1"; gene_id "Ledus.S3G149600"
Ledus.S3	AUGUSTUS	start_codon	11910214	11910216	.	-	0	transcript_id "Ledus.S3G149600.t1"; gene_id "Ledus.S3G149600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2388.t1 is derived from g9251.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17847272	17849577	.	-	.	Ledus.S2G227000
Ledus.S2	AUGUSTUS	transcript	17847272	17849577	.	-	.	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	stop_codon	17847269	17847271	.	-	0	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	CDS	17847272	17847472	0.7	-	0	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	exon	17847272	17847472	.	-	.	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	intron	17847473	17847573	.	-	.	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	CDS	17847574	17847743	0.97	-	2	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	exon	17847574	17847743	.	-	.	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	intron	17847744	17847821	.	-	.	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	CDS	17847822	17847928	1	-	1	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	exon	17847822	17847928	.	-	.	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	intron	17847929	17848021	.	-	.	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	CDS	17848022	17848354	1	-	1	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	exon	17848022	17848354	.	-	.	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	intron	17848355	17848507	.	-	.	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	CDS	17848508	17849577	1	-	0	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	exon	17848508	17849577	.	-	.	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
Ledus.S2	AUGUSTUS	start_codon	17849575	17849577	.	-	0	transcript_id "Ledus.S2G227000.t1"; gene_id "Ledus.S2G227000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5971.t1 is derived from g3414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28107976	28111731	.	+	.	Ledus.S1G339200
Ledus.S1	AUGUSTUS	transcript	28107976	28111731	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	start_codon	28107976	28107978	.	+	0	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	CDS	28107976	28108297	0.99	+	0	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	exon	28107976	28108297	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	intron	28108298	28108537	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	CDS	28108538	28109483	1	+	2	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	exon	28108538	28109483	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	intron	28109484	28109565	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	CDS	28109566	28109648	1	+	1	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	exon	28109566	28109648	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	intron	28109649	28109792	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	CDS	28109793	28109801	1	+	2	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	exon	28109793	28109801	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	intron	28109802	28109925	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	CDS	28109926	28110014	1	+	2	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	exon	28109926	28110014	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	intron	28110015	28110145	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	CDS	28110146	28110219	1	+	0	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	exon	28110146	28110219	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	intron	28110220	28110359	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	CDS	28110360	28110410	1	+	1	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	exon	28110360	28110410	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	intron	28110411	28110514	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	CDS	28110515	28110591	0.99	+	1	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	exon	28110515	28110591	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	intron	28110592	28110712	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	CDS	28110713	28111731	1	+	2	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	exon	28110713	28111731	.	+	.	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
Ledus.S1	AUGUSTUS	stop_codon	28111732	28111734	.	+	0	transcript_id "Ledus.S1G339200.t1"; gene_id "Ledus.S1G339200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11757.t1 is derived from g5377.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6602058	6602820	.	+	.	Ledus.S4G091400
Ledus.S4	AUGUSTUS	transcript	6602058	6602820	.	+	.	transcript_id "Ledus.S4G091400.t1"; gene_id "Ledus.S4G091400"
Ledus.S4	AUGUSTUS	start_codon	6602058	6602060	.	+	0	transcript_id "Ledus.S4G091400.t1"; gene_id "Ledus.S4G091400"
Ledus.S4	AUGUSTUS	CDS	6602058	6602376	0.57	+	0	transcript_id "Ledus.S4G091400.t1"; gene_id "Ledus.S4G091400"
Ledus.S4	AUGUSTUS	exon	6602058	6602376	.	+	.	transcript_id "Ledus.S4G091400.t1"; gene_id "Ledus.S4G091400"
Ledus.S4	AUGUSTUS	intron	6602377	6602740	.	+	.	transcript_id "Ledus.S4G091400.t1"; gene_id "Ledus.S4G091400"
Ledus.S4	AUGUSTUS	CDS	6602741	6602820	0.97	+	2	transcript_id "Ledus.S4G091400.t1"; gene_id "Ledus.S4G091400"
Ledus.S4	AUGUSTUS	exon	6602741	6602820	.	+	.	transcript_id "Ledus.S4G091400.t1"; gene_id "Ledus.S4G091400"
Ledus.S4	AUGUSTUS	stop_codon	6602821	6602823	.	+	0	transcript_id "Ledus.S4G091400.t1"; gene_id "Ledus.S4G091400"
# This transcript jg3368.t2 is derived from g803.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3368.t3 is derived from g803.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3369.t1 is derived from g804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7886985	7887410	.	-	.	Ledus.S1G079000
Ledus.S1	AUGUSTUS	transcript	7886985	7887410	.	-	.	transcript_id "Ledus.S1G079000.t1"; gene_id "Ledus.S1G079000"
Ledus.S1	AUGUSTUS	stop_codon	7886982	7886984	.	-	0	transcript_id "Ledus.S1G079000.t1"; gene_id "Ledus.S1G079000"
Ledus.S1	AUGUSTUS	CDS	7886985	7887184	0.95	-	2	transcript_id "Ledus.S1G079000.t1"; gene_id "Ledus.S1G079000"
Ledus.S1	AUGUSTUS	exon	7886985	7887184	.	-	.	transcript_id "Ledus.S1G079000.t1"; gene_id "Ledus.S1G079000"
Ledus.S1	AUGUSTUS	intron	7887185	7887388	.	-	.	transcript_id "Ledus.S1G079000.t1"; gene_id "Ledus.S1G079000"
Ledus.S1	AUGUSTUS	CDS	7887389	7887410	0.76	-	0	transcript_id "Ledus.S1G079000.t1"; gene_id "Ledus.S1G079000"
Ledus.S1	AUGUSTUS	exon	7887389	7887410	.	-	.	transcript_id "Ledus.S1G079000.t1"; gene_id "Ledus.S1G079000"
Ledus.S1	AUGUSTUS	start_codon	7887408	7887410	.	-	0	transcript_id "Ledus.S1G079000.t1"; gene_id "Ledus.S1G079000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg237.t1 is derived from g7098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1049312	1049822	.	-	.	Ledus.S2G011900
Ledus.S2	AUGUSTUS	transcript	1049312	1049822	.	-	.	transcript_id "Ledus.S2G011900.t1"; gene_id "Ledus.S2G011900"
Ledus.S2	AUGUSTUS	stop_codon	1049309	1049311	.	-	0	transcript_id "Ledus.S2G011900.t1"; gene_id "Ledus.S2G011900"
Ledus.S2	AUGUSTUS	CDS	1049312	1049388	1	-	2	transcript_id "Ledus.S2G011900.t1"; gene_id "Ledus.S2G011900"
Ledus.S2	AUGUSTUS	exon	1049312	1049388	.	-	.	transcript_id "Ledus.S2G011900.t1"; gene_id "Ledus.S2G011900"
Ledus.S2	AUGUSTUS	intron	1049389	1049479	.	-	.	transcript_id "Ledus.S2G011900.t1"; gene_id "Ledus.S2G011900"
Ledus.S2	AUGUSTUS	CDS	1049480	1049822	0.72	-	0	transcript_id "Ledus.S2G011900.t1"; gene_id "Ledus.S2G011900"
Ledus.S2	AUGUSTUS	exon	1049480	1049822	.	-	.	transcript_id "Ledus.S2G011900.t1"; gene_id "Ledus.S2G011900"
Ledus.S2	AUGUSTUS	start_codon	1049820	1049822	.	-	0	transcript_id "Ledus.S2G011900.t1"; gene_id "Ledus.S2G011900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7061.t1 is derived from g6592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1151825	1153248	.	-	.	Ledus.C7G012200
Ledus.C7	AUGUSTUS	transcript	1151825	1153248	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	stop_codon	1151822	1151824	.	-	0	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	CDS	1151825	1151889	0.78	-	2	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	exon	1151825	1151889	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	intron	1151890	1151989	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	CDS	1151990	1151994	0.78	-	1	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	exon	1151990	1151994	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	intron	1151995	1152084	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	CDS	1152085	1152095	0.97	-	0	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	exon	1152085	1152095	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	intron	1152096	1152179	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	CDS	1152180	1152236	1	-	0	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	exon	1152180	1152236	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	intron	1152237	1152329	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	CDS	1152330	1152414	1	-	1	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	exon	1152330	1152414	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	intron	1152415	1152512	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	CDS	1152513	1152638	1	-	1	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	exon	1152513	1152638	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	intron	1152639	1152735	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	CDS	1152736	1152779	1	-	0	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	exon	1152736	1152779	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	intron	1152780	1152872	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	CDS	1152873	1152995	1	-	0	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	exon	1152873	1152995	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	intron	1152996	1153125	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	CDS	1153126	1153248	0.49	-	0	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	exon	1153126	1153248	.	-	.	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
Ledus.C7	AUGUSTUS	start_codon	1153246	1153248	.	-	0	transcript_id "Ledus.C7G012200.t1"; gene_id "Ledus.C7G012200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6917.t1 is derived from g4361.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35339066	35342912	.	+	.	Ledus.S1G433800
Ledus.S1	AUGUSTUS	transcript	35339066	35342912	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	start_codon	35339066	35339068	.	+	0	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	CDS	35339066	35339146	0.74	+	0	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	exon	35339066	35339146	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	intron	35339147	35339253	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	CDS	35339254	35339944	0.48	+	0	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	exon	35339254	35339944	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	intron	35339945	35340150	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	CDS	35340151	35340312	1	+	2	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	exon	35340151	35340312	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	intron	35340313	35340457	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	CDS	35340458	35340591	1	+	2	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	exon	35340458	35340591	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	intron	35340592	35340739	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	CDS	35340740	35340886	1	+	0	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	exon	35340740	35340886	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	intron	35340887	35341002	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	CDS	35341003	35341195	1	+	0	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	exon	35341003	35341195	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	intron	35341196	35341284	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	CDS	35341285	35341744	1	+	2	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	exon	35341285	35341744	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	intron	35341745	35341887	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	CDS	35341888	35342719	1	+	1	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	exon	35341888	35342719	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	intron	35342720	35342810	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	CDS	35342811	35342912	0.97	+	0	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	exon	35342811	35342912	.	+	.	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
Ledus.S1	AUGUSTUS	stop_codon	35342913	35342915	.	+	0	transcript_id "Ledus.S1G433800.t1"; gene_id "Ledus.S1G433800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13080.t1 is derived from g6890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5196640	5198961	.	+	.	Ledus.S6G014200
Ledus.S6	AUGUSTUS	transcript	5196640	5198961	.	+	.	transcript_id "Ledus.S6G014200.t1"; gene_id "Ledus.S6G014200"
Ledus.S6	AUGUSTUS	start_codon	5196640	5196642	.	+	0	transcript_id "Ledus.S6G014200.t1"; gene_id "Ledus.S6G014200"
Ledus.S6	AUGUSTUS	CDS	5196640	5196792	1	+	0	transcript_id "Ledus.S6G014200.t1"; gene_id "Ledus.S6G014200"
Ledus.S6	AUGUSTUS	exon	5196640	5196792	.	+	.	transcript_id "Ledus.S6G014200.t1"; gene_id "Ledus.S6G014200"
Ledus.S6	AUGUSTUS	intron	5196793	5197596	.	+	.	transcript_id "Ledus.S6G014200.t1"; gene_id "Ledus.S6G014200"
Ledus.S6	AUGUSTUS	CDS	5197597	5198600	0.53	+	0	transcript_id "Ledus.S6G014200.t1"; gene_id "Ledus.S6G014200"
Ledus.S6	AUGUSTUS	exon	5197597	5198600	.	+	.	transcript_id "Ledus.S6G014200.t1"; gene_id "Ledus.S6G014200"
Ledus.S6	AUGUSTUS	intron	5198601	5198816	.	+	.	transcript_id "Ledus.S6G014200.t1"; gene_id "Ledus.S6G014200"
Ledus.S6	AUGUSTUS	CDS	5198817	5198961	0.61	+	1	transcript_id "Ledus.S6G014200.t1"; gene_id "Ledus.S6G014200"
Ledus.S6	AUGUSTUS	exon	5198817	5198961	.	+	.	transcript_id "Ledus.S6G014200.t1"; gene_id "Ledus.S6G014200"
Ledus.S6	AUGUSTUS	stop_codon	5198962	5198964	.	+	0	transcript_id "Ledus.S6G014200.t1"; gene_id "Ledus.S6G014200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13096.t1 is derived from g6906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5441259	5441480	.	+	.	Ledus.S6G015800
Ledus.S6	AUGUSTUS	transcript	5441259	5441480	.	+	.	transcript_id "Ledus.S6G015800.t1"; gene_id "Ledus.S6G015800"
Ledus.S6	AUGUSTUS	start_codon	5441259	5441261	.	+	0	transcript_id "Ledus.S6G015800.t1"; gene_id "Ledus.S6G015800"
Ledus.S6	AUGUSTUS	CDS	5441259	5441480	0.77	+	0	transcript_id "Ledus.S6G015800.t1"; gene_id "Ledus.S6G015800"
Ledus.S6	AUGUSTUS	exon	5441259	5441480	.	+	.	transcript_id "Ledus.S6G015800.t1"; gene_id "Ledus.S6G015800"
Ledus.S6	AUGUSTUS	stop_codon	5441481	5441483	.	+	0	transcript_id "Ledus.S6G015800.t1"; gene_id "Ledus.S6G015800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3389.t1 is derived from g824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8022035	8022574	.	-	.	Ledus.S1G081000
Ledus.S1	AUGUSTUS	transcript	8022035	8022574	.	-	.	transcript_id "Ledus.S1G081000.t1"; gene_id "Ledus.S1G081000"
Ledus.S1	AUGUSTUS	stop_codon	8022032	8022034	.	-	0	transcript_id "Ledus.S1G081000.t1"; gene_id "Ledus.S1G081000"
Ledus.S1	AUGUSTUS	CDS	8022035	8022574	0.4	-	0	transcript_id "Ledus.S1G081000.t1"; gene_id "Ledus.S1G081000"
Ledus.S1	AUGUSTUS	exon	8022035	8022574	.	-	.	transcript_id "Ledus.S1G081000.t1"; gene_id "Ledus.S1G081000"
Ledus.S1	AUGUSTUS	start_codon	8022572	8022574	.	-	0	transcript_id "Ledus.S1G081000.t1"; gene_id "Ledus.S1G081000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg412.t1 is derived from g7273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2277854	2278054	.	+	.	Ledus.S2G029400
Ledus.S2	AUGUSTUS	transcript	2277854	2278054	.	+	.	transcript_id "Ledus.S2G029400.t1"; gene_id "Ledus.S2G029400"
Ledus.S2	AUGUSTUS	start_codon	2277854	2277856	.	+	0	transcript_id "Ledus.S2G029400.t1"; gene_id "Ledus.S2G029400"
Ledus.S2	AUGUSTUS	CDS	2277854	2278054	0.57	+	0	transcript_id "Ledus.S2G029400.t1"; gene_id "Ledus.S2G029400"
Ledus.S2	AUGUSTUS	exon	2277854	2278054	.	+	.	transcript_id "Ledus.S2G029400.t1"; gene_id "Ledus.S2G029400"
Ledus.S2	AUGUSTUS	stop_codon	2278055	2278057	.	+	0	transcript_id "Ledus.S2G029400.t1"; gene_id "Ledus.S2G029400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9508.t1 is derived from g10538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7506294	7507489	.	-	.	Ledus.S3G098500
Ledus.S3	AUGUSTUS	transcript	7506294	7507489	.	-	.	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	stop_codon	7506291	7506293	.	-	0	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	CDS	7506294	7506345	1	-	1	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	exon	7506294	7506345	.	-	.	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	intron	7506346	7506503	.	-	.	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	CDS	7506504	7506592	1	-	0	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	exon	7506504	7506592	.	-	.	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	intron	7506593	7506758	.	-	.	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	CDS	7506759	7506840	1	-	1	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	exon	7506759	7506840	.	-	.	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	intron	7506841	7506953	.	-	.	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	CDS	7506954	7507489	0.63	-	0	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	exon	7506954	7507489	.	-	.	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
Ledus.S3	AUGUSTUS	start_codon	7507487	7507489	.	-	0	transcript_id "Ledus.S3G098500.t1"; gene_id "Ledus.S3G098500"
# This transcript jg1433.t2 is derived from g8294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1434.t1 is derived from g8295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10072026	10073914	.	+	.	Ledus.S2G131600
Ledus.S2	AUGUSTUS	transcript	10072026	10073914	.	+	.	transcript_id "Ledus.S2G131600.t1"; gene_id "Ledus.S2G131600"
Ledus.S2	AUGUSTUS	start_codon	10072026	10072028	.	+	0	transcript_id "Ledus.S2G131600.t1"; gene_id "Ledus.S2G131600"
Ledus.S2	AUGUSTUS	CDS	10072026	10072463	0.74	+	0	transcript_id "Ledus.S2G131600.t1"; gene_id "Ledus.S2G131600"
Ledus.S2	AUGUSTUS	exon	10072026	10072463	.	+	.	transcript_id "Ledus.S2G131600.t1"; gene_id "Ledus.S2G131600"
Ledus.S2	AUGUSTUS	intron	10072464	10072555	.	+	.	transcript_id "Ledus.S2G131600.t1"; gene_id "Ledus.S2G131600"
Ledus.S2	AUGUSTUS	CDS	10072556	10073914	0.77	+	0	transcript_id "Ledus.S2G131600.t1"; gene_id "Ledus.S2G131600"
Ledus.S2	AUGUSTUS	exon	10072556	10073914	.	+	.	transcript_id "Ledus.S2G131600.t1"; gene_id "Ledus.S2G131600"
Ledus.S2	AUGUSTUS	stop_codon	10073915	10073917	.	+	0	transcript_id "Ledus.S2G131600.t1"; gene_id "Ledus.S2G131600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1831.t1 is derived from g8694.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12854227	12854865	.	+	.	Ledus.S2G171300
Ledus.S2	AUGUSTUS	transcript	12854227	12854865	.	+	.	transcript_id "Ledus.S2G171300.t1"; gene_id "Ledus.S2G171300"
Ledus.S2	AUGUSTUS	start_codon	12854227	12854229	.	+	0	transcript_id "Ledus.S2G171300.t1"; gene_id "Ledus.S2G171300"
Ledus.S2	AUGUSTUS	CDS	12854227	12854364	0.69	+	0	transcript_id "Ledus.S2G171300.t1"; gene_id "Ledus.S2G171300"
Ledus.S2	AUGUSTUS	exon	12854227	12854364	.	+	.	transcript_id "Ledus.S2G171300.t1"; gene_id "Ledus.S2G171300"
Ledus.S2	AUGUSTUS	intron	12854365	12854559	.	+	.	transcript_id "Ledus.S2G171300.t1"; gene_id "Ledus.S2G171300"
Ledus.S2	AUGUSTUS	CDS	12854560	12854598	1	+	0	transcript_id "Ledus.S2G171300.t1"; gene_id "Ledus.S2G171300"
Ledus.S2	AUGUSTUS	exon	12854560	12854598	.	+	.	transcript_id "Ledus.S2G171300.t1"; gene_id "Ledus.S2G171300"
Ledus.S2	AUGUSTUS	intron	12854599	12854682	.	+	.	transcript_id "Ledus.S2G171300.t1"; gene_id "Ledus.S2G171300"
Ledus.S2	AUGUSTUS	CDS	12854683	12854865	0.98	+	0	transcript_id "Ledus.S2G171300.t1"; gene_id "Ledus.S2G171300"
Ledus.S2	AUGUSTUS	exon	12854683	12854865	.	+	.	transcript_id "Ledus.S2G171300.t1"; gene_id "Ledus.S2G171300"
Ledus.S2	AUGUSTUS	stop_codon	12854866	12854868	.	+	0	transcript_id "Ledus.S2G171300.t1"; gene_id "Ledus.S2G171300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4209.t1 is derived from g1645.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15478504	15479404	.	-	.	Ledus.S1G163000
Ledus.S1	AUGUSTUS	transcript	15478504	15479404	.	-	.	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	stop_codon	15478501	15478503	.	-	0	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	CDS	15478504	15478548	1	-	0	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	exon	15478504	15478548	.	-	.	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	intron	15478549	15478639	.	-	.	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	CDS	15478640	15478712	1	-	1	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	exon	15478640	15478712	.	-	.	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	intron	15478713	15478791	.	-	.	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	CDS	15478792	15478863	1	-	1	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	exon	15478792	15478863	.	-	.	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	intron	15478864	15478947	.	-	.	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	CDS	15478948	15479016	1	-	1	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	exon	15478948	15479016	.	-	.	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	intron	15479017	15479102	.	-	.	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	CDS	15479103	15479233	1	-	0	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	exon	15479103	15479233	.	-	.	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	intron	15479234	15479359	.	-	.	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	CDS	15479360	15479404	0.54	-	0	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	exon	15479360	15479404	.	-	.	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
Ledus.S1	AUGUSTUS	start_codon	15479402	15479404	.	-	0	transcript_id "Ledus.S1G163000.t1"; gene_id "Ledus.S1G163000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9956.t1 is derived from g10986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11460175	11463110	.	+	.	Ledus.S3G143300
Ledus.S3	AUGUSTUS	transcript	11460175	11463110	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	start_codon	11460175	11460177	.	+	0	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11460175	11460328	0.97	+	0	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11460175	11460328	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	intron	11460329	11460441	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11460442	11460859	1	+	2	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11460442	11460859	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	intron	11460860	11460959	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11460960	11461023	1	+	1	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11460960	11461023	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	intron	11461024	11461225	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11461226	11461390	1	+	0	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11461226	11461390	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	intron	11461391	11461480	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11461481	11461597	1	+	0	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11461481	11461597	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	intron	11461598	11461725	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11461726	11461830	1	+	0	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11461726	11461830	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	intron	11461831	11461927	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11461928	11461975	0.84	+	0	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11461928	11461975	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	intron	11461976	11462087	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11462088	11462138	0.78	+	0	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11462088	11462138	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	intron	11462139	11462222	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11462223	11462354	0.89	+	0	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11462223	11462354	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	intron	11462355	11462465	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11462466	11462582	1	+	0	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11462466	11462582	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	intron	11462583	11462675	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11462676	11462735	1	+	0	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11462676	11462735	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	intron	11462736	11462858	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11462859	11462917	1	+	0	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11462859	11462917	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	intron	11462918	11463013	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	CDS	11463014	11463110	1	+	1	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	exon	11463014	11463110	.	+	.	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
Ledus.S3	AUGUSTUS	stop_codon	11463111	11463113	.	+	0	transcript_id "Ledus.S3G143300.t1"; gene_id "Ledus.S3G143300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12400.t1 is derived from g6021.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11661450	11666452	.	-	.	Ledus.S4G155600
Ledus.S4	AUGUSTUS	transcript	11661450	11666452	.	-	.	transcript_id "Ledus.S4G155600.t1"; gene_id "Ledus.S4G155600"
Ledus.S4	AUGUSTUS	stop_codon	11661447	11661449	.	-	0	transcript_id "Ledus.S4G155600.t1"; gene_id "Ledus.S4G155600"
Ledus.S4	AUGUSTUS	CDS	11661450	11661568	0.37	-	2	transcript_id "Ledus.S4G155600.t1"; gene_id "Ledus.S4G155600"
Ledus.S4	AUGUSTUS	exon	11661450	11661568	.	-	.	transcript_id "Ledus.S4G155600.t1"; gene_id "Ledus.S4G155600"
Ledus.S4	AUGUSTUS	intron	11661569	11663245	.	-	.	transcript_id "Ledus.S4G155600.t1"; gene_id "Ledus.S4G155600"
Ledus.S4	AUGUSTUS	CDS	11663246	11663282	0.31	-	0	transcript_id "Ledus.S4G155600.t1"; gene_id "Ledus.S4G155600"
Ledus.S4	AUGUSTUS	exon	11663246	11663282	.	-	.	transcript_id "Ledus.S4G155600.t1"; gene_id "Ledus.S4G155600"
Ledus.S4	AUGUSTUS	intron	11663283	11665687	.	-	.	transcript_id "Ledus.S4G155600.t1"; gene_id "Ledus.S4G155600"
Ledus.S4	AUGUSTUS	CDS	11665688	11666452	0.18	-	0	transcript_id "Ledus.S4G155600.t1"; gene_id "Ledus.S4G155600"
Ledus.S4	AUGUSTUS	exon	11665688	11666452	.	-	.	transcript_id "Ledus.S4G155600.t1"; gene_id "Ledus.S4G155600"
Ledus.S4	AUGUSTUS	start_codon	11666450	11666452	.	-	0	transcript_id "Ledus.S4G155600.t1"; gene_id "Ledus.S4G155600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12463.t1 is derived from g6084.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12108398	12110036	.	+	.	Ledus.S4G161900
Ledus.S4	AUGUSTUS	transcript	12108398	12110036	.	+	.	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	start_codon	12108398	12108400	.	+	0	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	CDS	12108398	12108538	0.59	+	0	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	exon	12108398	12108538	.	+	.	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	intron	12108539	12108822	.	+	.	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	CDS	12108823	12108933	1	+	0	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	exon	12108823	12108933	.	+	.	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	intron	12108934	12109015	.	+	.	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	CDS	12109016	12109081	1	+	0	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	exon	12109016	12109081	.	+	.	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	intron	12109082	12109152	.	+	.	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	CDS	12109153	12109341	0.42	+	0	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	exon	12109153	12109341	.	+	.	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	intron	12109342	12109468	.	+	.	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	CDS	12109469	12109535	0.19	+	0	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	exon	12109469	12109535	.	+	.	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	intron	12109536	12109722	.	+	.	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	CDS	12109723	12110036	0.88	+	2	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	exon	12109723	12110036	.	+	.	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	stop_codon	12110037	12110039	.	+	0	transcript_id "Ledus.S4G161900.t1"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	transcript	12108398	12110036	.	+	.	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	start_codon	12108398	12108400	.	+	0	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	CDS	12108398	12108538	0.48	+	0	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	exon	12108398	12108538	.	+	.	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	intron	12108539	12108822	.	+	.	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	CDS	12108823	12108933	1	+	0	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	exon	12108823	12108933	.	+	.	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	intron	12108934	12109015	.	+	.	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	CDS	12109016	12109081	0.99	+	0	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	exon	12109016	12109081	.	+	.	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	intron	12109082	12109171	.	+	.	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	CDS	12109172	12109181	0.39	+	0	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	exon	12109172	12109181	.	+	.	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	intron	12109182	12109502	.	+	.	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	CDS	12109503	12109640	0.28	+	2	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	exon	12109503	12109640	.	+	.	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	intron	12109641	12109722	.	+	.	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	CDS	12109723	12110036	0.84	+	2	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	exon	12109723	12110036	.	+	.	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
Ledus.S4	AUGUSTUS	stop_codon	12110037	12110039	.	+	0	transcript_id "Ledus.S4G161900.t2"; gene_id "Ledus.S4G161900"
# This transcript jg5326.t2 is derived from g2765.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5327.t1 is derived from g2766.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23367059	23386216	.	-	.	Ledus.S1G274800
Ledus.S1	AUGUSTUS	transcript	23367059	23386216	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	stop_codon	23367056	23367058	.	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23367059	23367133	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23367059	23367133	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23367134	23367232	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23367233	23367382	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23367233	23367382	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23367383	23367456	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23367457	23367522	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23367457	23367522	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23367523	23367609	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23367610	23367744	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23367610	23367744	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23367745	23367815	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23367816	23367925	0.68	-	2	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23367816	23367925	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23367926	23368035	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23368036	23368075	0.73	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23368036	23368075	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23368076	23368148	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23368149	23368248	0.9	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23368149	23368248	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23368249	23368373	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23368374	23368420	0.9	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23368374	23368420	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23368421	23368527	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23368528	23368609	0.96	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23368528	23368609	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23368610	23368705	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23368706	23368785	0.98	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23368706	23368785	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23368786	23368964	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23368965	23369054	0.98	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23368965	23369054	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23369055	23369154	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23369155	23369263	0.99	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23369155	23369263	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23369264	23369365	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23369366	23369460	0.99	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23369366	23369460	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23369461	23369545	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23369546	23369605	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23369546	23369605	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23369606	23369753	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23369754	23369810	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23369754	23369810	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23369811	23370010	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23370011	23370151	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23370011	23370151	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23370152	23370304	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23370305	23370367	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23370305	23370367	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23370368	23370511	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23370512	23370601	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23370512	23370601	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23370602	23370742	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23370743	23370823	0.98	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23370743	23370823	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23370824	23371006	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23371007	23371090	0.84	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23371007	23371090	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23371091	23371182	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23371183	23371224	0.69	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23371183	23371224	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23371225	23371398	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23371399	23371446	0.99	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23371399	23371446	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23371447	23371599	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23371600	23371819	1	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23371600	23371819	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23371820	23371919	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23371920	23372071	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23371920	23372071	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23372072	23372167	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23372168	23372305	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23372168	23372305	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23372306	23372510	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23372511	23372675	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23372511	23372675	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23372676	23372822	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23372823	23372960	0.96	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23372823	23372960	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23372961	23373074	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23373075	23373149	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23373075	23373149	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23373150	23373286	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23373287	23373353	1	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23373287	23373353	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23373354	23373507	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23373508	23373620	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23373508	23373620	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23373621	23373700	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23373701	23373976	0.64	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23373701	23373976	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23373977	23374203	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23374204	23374275	0.57	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23374204	23374275	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23374276	23374370	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23374371	23374475	0.68	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23374371	23374475	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23374476	23374617	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23374618	23374665	0.64	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23374618	23374665	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23374666	23375132	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23375133	23375256	0.56	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23375133	23375256	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23375257	23375461	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23375462	23375570	0.59	-	2	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23375462	23375570	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23375571	23375710	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23375711	23375780	0.47	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23375711	23375780	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23375781	23376013	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23376014	23376085	0.88	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23376014	23376085	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23376086	23376201	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23376202	23376390	0.98	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23376202	23376390	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23376391	23376510	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23376511	23376703	0.61	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23376511	23376703	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23376704	23376913	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23376914	23376960	0.69	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23376914	23376960	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23376961	23377036	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23377037	23377135	0.99	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23377037	23377135	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23377136	23377513	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23377514	23377606	0.89	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23377514	23377606	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23377607	23378052	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23378053	23378122	0.89	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23378053	23378122	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23378123	23378248	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23378249	23378370	0.94	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23378249	23378370	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23378371	23378546	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23378547	23378735	0.93	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23378547	23378735	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23378736	23378819	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23378820	23378939	0.99	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23378820	23378939	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23378940	23379028	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23379029	23379103	0.97	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23379029	23379103	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23379104	23379213	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23379214	23379277	0.99	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23379214	23379277	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23379278	23379384	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23379385	23379431	0.99	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23379385	23379431	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23379432	23379614	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23379615	23379771	0.89	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23379615	23379771	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23379772	23380009	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23380010	23380137	1	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23380010	23380137	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23380138	23380282	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23380283	23380408	0.77	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23380283	23380408	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23380409	23380609	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23380610	23380783	0.74	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23380610	23380783	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23380784	23380917	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23380918	23380989	0.55	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23380918	23380989	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23380990	23381106	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23381107	23381743	0.14	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23381107	23381743	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23381744	23381860	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23381861	23382060	0.58	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23381861	23382060	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23382061	23382129	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23382130	23382225	0.98	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23382130	23382225	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23382226	23382313	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23382314	23382484	0.56	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23382314	23382484	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23382485	23382606	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23382607	23382678	0.6	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23382607	23382678	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23382679	23382799	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23382800	23382848	0.93	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23382800	23382848	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23382849	23382965	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23382966	23383036	0.99	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23382966	23383036	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23383037	23383159	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23383160	23383201	0.99	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23383160	23383201	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23383202	23383411	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23383412	23383486	0.76	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23383412	23383486	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23383487	23383595	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23383596	23383677	0.98	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23383596	23383677	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23383678	23383766	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23383767	23383823	0.99	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23383767	23383823	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23383824	23383974	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23383975	23384064	0.63	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23383975	23384064	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23384065	23384246	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23384247	23384353	0.98	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23384247	23384353	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23384354	23384461	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23384462	23384534	1	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23384462	23384534	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23384535	23384677	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23384678	23384820	0.4	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23384678	23384820	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23384821	23384906	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23384907	23385063	0.49	-	1	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23384907	23385063	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23385064	23385212	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23385213	23385387	0.52	-	2	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23385213	23385387	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23385388	23385500	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23385501	23385662	0.98	-	2	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23385501	23385662	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23385663	23385746	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23385747	23385890	1	-	2	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23385747	23385890	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	intron	23385891	23385966	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	CDS	23385967	23386216	0.58	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	exon	23385967	23386216	.	-	.	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
Ledus.S1	AUGUSTUS	start_codon	23386214	23386216	.	-	0	transcript_id "Ledus.S1G274800.t1"; gene_id "Ledus.S1G274800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12561.t1 is derived from g6183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12880428	12883260	.	+	.	Ledus.S4G171700
Ledus.S4	AUGUSTUS	transcript	12880428	12883260	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	start_codon	12880428	12880430	.	+	0	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	CDS	12880428	12880565	0.99	+	0	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	exon	12880428	12880565	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	intron	12880566	12880642	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	CDS	12880643	12880880	0.98	+	0	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	exon	12880643	12880880	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	intron	12880881	12880989	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	CDS	12880990	12881244	0.99	+	2	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	exon	12880990	12881244	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	intron	12881245	12881313	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	CDS	12881314	12881367	1	+	2	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	exon	12881314	12881367	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	intron	12881368	12881455	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	CDS	12881456	12881716	1	+	2	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	exon	12881456	12881716	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	intron	12881717	12881804	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	CDS	12881805	12881857	1	+	2	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	exon	12881805	12881857	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	intron	12881858	12881950	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	CDS	12881951	12882065	1	+	0	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	exon	12881951	12882065	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	intron	12882066	12882151	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	CDS	12882152	12883260	0.56	+	2	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	exon	12882152	12883260	.	+	.	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
Ledus.S4	AUGUSTUS	stop_codon	12883261	12883263	.	+	0	transcript_id "Ledus.S4G171700.t1"; gene_id "Ledus.S4G171700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12385.t1 is derived from g6006.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11571143	11571445	.	-	.	Ledus.S4G154100
Ledus.S4	AUGUSTUS	transcript	11571143	11571445	.	-	.	transcript_id "Ledus.S4G154100.t1"; gene_id "Ledus.S4G154100"
Ledus.S4	AUGUSTUS	stop_codon	11571140	11571142	.	-	0	transcript_id "Ledus.S4G154100.t1"; gene_id "Ledus.S4G154100"
Ledus.S4	AUGUSTUS	CDS	11571143	11571445	0.74	-	0	transcript_id "Ledus.S4G154100.t1"; gene_id "Ledus.S4G154100"
Ledus.S4	AUGUSTUS	exon	11571143	11571445	.	-	.	transcript_id "Ledus.S4G154100.t1"; gene_id "Ledus.S4G154100"
Ledus.S4	AUGUSTUS	start_codon	11571443	11571445	.	-	0	transcript_id "Ledus.S4G154100.t1"; gene_id "Ledus.S4G154100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5236.t1 is derived from g2675.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22623940	22626115	.	-	.	Ledus.S1G265700
Ledus.S1	AUGUSTUS	transcript	22623940	22626115	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	stop_codon	22623937	22623939	.	-	0	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	CDS	22623940	22624062	0.9	-	0	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	exon	22623940	22624062	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	intron	22624063	22624182	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	CDS	22624183	22624347	1	-	0	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	exon	22624183	22624347	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	intron	22624348	22624449	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	CDS	22624450	22624548	0.99	-	0	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	exon	22624450	22624548	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	intron	22624549	22624686	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	CDS	22624687	22624761	1	-	0	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	exon	22624687	22624761	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	intron	22624762	22624857	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	CDS	22624858	22624926	1	-	0	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	exon	22624858	22624926	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	intron	22624927	22625028	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	CDS	22625029	22625227	0.99	-	1	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	exon	22625029	22625227	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	intron	22625228	22625387	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	CDS	22625388	22625493	1	-	2	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	exon	22625388	22625493	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	intron	22625494	22625637	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	CDS	22625638	22626115	1	-	0	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	exon	22625638	22626115	.	-	.	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
Ledus.S1	AUGUSTUS	start_codon	22626113	22626115	.	-	0	transcript_id "Ledus.S1G265700.t1"; gene_id "Ledus.S1G265700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4467.t1 is derived from g1903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17221487	17224366	.	-	.	Ledus.S1G188800
Ledus.S1	AUGUSTUS	transcript	17221487	17224366	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	stop_codon	17221484	17221486	.	-	0	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17221487	17221540	0.99	-	0	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17221487	17221540	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	intron	17221541	17221761	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17221762	17221851	1	-	0	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17221762	17221851	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	intron	17221852	17221938	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17221939	17222007	1	-	0	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17221939	17222007	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	intron	17222008	17222105	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17222106	17222213	1	-	0	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17222106	17222213	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	intron	17222214	17222378	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17222379	17222442	1	-	1	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17222379	17222442	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	intron	17222443	17222529	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17222530	17222591	1	-	0	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17222530	17222591	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	intron	17222592	17222693	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17222694	17222797	1	-	2	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17222694	17222797	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	intron	17222798	17222902	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17222903	17222954	0.97	-	0	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17222903	17222954	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	intron	17222955	17223091	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17223092	17223183	1	-	2	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17223092	17223183	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	intron	17223184	17223339	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17223340	17223565	1	-	0	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17223340	17223565	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	intron	17223566	17223649	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17223650	17223724	0.92	-	0	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17223650	17223724	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	intron	17223725	17223912	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17223913	17224102	0.19	-	1	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17223913	17224102	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	intron	17224103	17224298	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	CDS	17224299	17224366	0.55	-	0	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	exon	17224299	17224366	.	-	.	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
Ledus.S1	AUGUSTUS	start_codon	17224364	17224366	.	-	0	transcript_id "Ledus.S1G188800.t1"; gene_id "Ledus.S1G188800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5016.t1 is derived from g2454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21137981	21141369	.	-	.	Ledus.S1G243700
Ledus.S1	AUGUSTUS	transcript	21137981	21141369	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	stop_codon	21137978	21137980	.	-	0	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	CDS	21137981	21138069	1	-	2	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	exon	21137981	21138069	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	intron	21138070	21138150	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	CDS	21138151	21138286	0.98	-	0	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	exon	21138151	21138286	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	intron	21138287	21138753	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	CDS	21138754	21138773	0.44	-	2	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	exon	21138754	21138773	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	intron	21138774	21138972	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	CDS	21138973	21139019	0.36	-	1	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	exon	21138973	21139019	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	intron	21139020	21139218	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	CDS	21139219	21139262	0.24	-	0	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	exon	21139219	21139262	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	intron	21139263	21139382	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	CDS	21139383	21139612	0.97	-	2	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	exon	21139383	21139612	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	intron	21139613	21139684	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	CDS	21139685	21140060	0.72	-	0	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	exon	21139685	21140060	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	intron	21140061	21140230	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	CDS	21140231	21140623	0.99	-	0	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	exon	21140231	21140623	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	intron	21140624	21140754	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	CDS	21140755	21141369	0.43	-	0	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	exon	21140755	21141369	.	-	.	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
Ledus.S1	AUGUSTUS	start_codon	21141367	21141369	.	-	0	transcript_id "Ledus.S1G243700.t1"; gene_id "Ledus.S1G243700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5694.t1 is derived from g3133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25944364	25947272	.	+	.	Ledus.S1G311500
Ledus.S1	AUGUSTUS	transcript	25944364	25947272	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	start_codon	25944364	25944366	.	+	0	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25944364	25944390	0.86	+	0	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25944364	25944390	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25944391	25944535	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25944536	25944789	1	+	0	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25944536	25944789	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25944790	25944914	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25944915	25945012	1	+	1	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25944915	25945012	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25945013	25945150	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25945151	25945233	0.69	+	2	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25945151	25945233	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25945234	25945347	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25945348	25945474	0.99	+	0	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25945348	25945474	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25945475	25945648	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25945649	25945724	1	+	2	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25945649	25945724	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25945725	25945857	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25945858	25945955	0.97	+	1	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25945858	25945955	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25945956	25946063	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25946064	25946148	0.99	+	2	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25946064	25946148	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25946149	25946276	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25946277	25946400	1	+	1	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25946277	25946400	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25946401	25946507	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25946508	25946609	0.96	+	0	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25946508	25946609	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25946610	25946703	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25946704	25946768	1	+	0	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25946704	25946768	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25946769	25946860	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25946861	25946942	1	+	1	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25946861	25946942	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25946943	25947038	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25947039	25947118	1	+	0	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25947039	25947118	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	intron	25947119	25947214	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	CDS	25947215	25947272	1	+	1	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	exon	25947215	25947272	.	+	.	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
Ledus.S1	AUGUSTUS	stop_codon	25947273	25947275	.	+	0	transcript_id "Ledus.S1G311500.t1"; gene_id "Ledus.S1G311500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12034.t1 is derived from g5653.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9036360	9036836	.	-	.	Ledus.S4G119000
Ledus.S4	AUGUSTUS	transcript	9036360	9036836	.	-	.	transcript_id "Ledus.S4G119000.t1"; gene_id "Ledus.S4G119000"
Ledus.S4	AUGUSTUS	stop_codon	9036357	9036359	.	-	0	transcript_id "Ledus.S4G119000.t1"; gene_id "Ledus.S4G119000"
Ledus.S4	AUGUSTUS	CDS	9036360	9036576	0.93	-	1	transcript_id "Ledus.S4G119000.t1"; gene_id "Ledus.S4G119000"
Ledus.S4	AUGUSTUS	exon	9036360	9036576	.	-	.	transcript_id "Ledus.S4G119000.t1"; gene_id "Ledus.S4G119000"
Ledus.S4	AUGUSTUS	intron	9036577	9036678	.	-	.	transcript_id "Ledus.S4G119000.t1"; gene_id "Ledus.S4G119000"
Ledus.S4	AUGUSTUS	CDS	9036679	9036836	0.97	-	0	transcript_id "Ledus.S4G119000.t1"; gene_id "Ledus.S4G119000"
Ledus.S4	AUGUSTUS	exon	9036679	9036836	.	-	.	transcript_id "Ledus.S4G119000.t1"; gene_id "Ledus.S4G119000"
Ledus.S4	AUGUSTUS	start_codon	9036834	9036836	.	-	0	transcript_id "Ledus.S4G119000.t1"; gene_id "Ledus.S4G119000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9015.t1 is derived from g10045.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3877636	3878547	.	+	.	Ledus.S3G049200
Ledus.S3	AUGUSTUS	transcript	3877636	3878547	.	+	.	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	start_codon	3877636	3877638	.	+	0	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	CDS	3877636	3877845	0.97	+	0	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	exon	3877636	3877845	.	+	.	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	intron	3877846	3877927	.	+	.	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	CDS	3877928	3878114	1	+	0	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	exon	3877928	3878114	.	+	.	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	intron	3878115	3878211	.	+	.	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	CDS	3878212	3878319	1	+	2	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	exon	3878212	3878319	.	+	.	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	intron	3878320	3878416	.	+	.	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	CDS	3878417	3878547	0.93	+	2	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	exon	3878417	3878547	.	+	.	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
Ledus.S3	AUGUSTUS	stop_codon	3878548	3878550	.	+	0	transcript_id "Ledus.S3G049200.t1"; gene_id "Ledus.S3G049200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6058.t1 is derived from g3501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28782413	28782828	.	-	.	Ledus.S1G347900
Ledus.S1	AUGUSTUS	transcript	28782413	28782828	.	-	.	transcript_id "Ledus.S1G347900.t1"; gene_id "Ledus.S1G347900"
Ledus.S1	AUGUSTUS	stop_codon	28782410	28782412	.	-	0	transcript_id "Ledus.S1G347900.t1"; gene_id "Ledus.S1G347900"
Ledus.S1	AUGUSTUS	CDS	28782413	28782610	0.62	-	0	transcript_id "Ledus.S1G347900.t1"; gene_id "Ledus.S1G347900"
Ledus.S1	AUGUSTUS	exon	28782413	28782610	.	-	.	transcript_id "Ledus.S1G347900.t1"; gene_id "Ledus.S1G347900"
Ledus.S1	AUGUSTUS	intron	28782611	28782690	.	-	.	transcript_id "Ledus.S1G347900.t1"; gene_id "Ledus.S1G347900"
Ledus.S1	AUGUSTUS	CDS	28782691	28782828	0.65	-	0	transcript_id "Ledus.S1G347900.t1"; gene_id "Ledus.S1G347900"
Ledus.S1	AUGUSTUS	exon	28782691	28782828	.	-	.	transcript_id "Ledus.S1G347900.t1"; gene_id "Ledus.S1G347900"
Ledus.S1	AUGUSTUS	start_codon	28782826	28782828	.	-	0	transcript_id "Ledus.S1G347900.t1"; gene_id "Ledus.S1G347900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4518.t1 is derived from g1955.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17489391	17489961	.	+	.	Ledus.S1G193900
Ledus.S1	AUGUSTUS	transcript	17489391	17489961	.	+	.	transcript_id "Ledus.S1G193900.t1"; gene_id "Ledus.S1G193900"
Ledus.S1	AUGUSTUS	start_codon	17489391	17489393	.	+	0	transcript_id "Ledus.S1G193900.t1"; gene_id "Ledus.S1G193900"
Ledus.S1	AUGUSTUS	CDS	17489391	17489622	0.52	+	0	transcript_id "Ledus.S1G193900.t1"; gene_id "Ledus.S1G193900"
Ledus.S1	AUGUSTUS	exon	17489391	17489622	.	+	.	transcript_id "Ledus.S1G193900.t1"; gene_id "Ledus.S1G193900"
Ledus.S1	AUGUSTUS	intron	17489623	17489764	.	+	.	transcript_id "Ledus.S1G193900.t1"; gene_id "Ledus.S1G193900"
Ledus.S1	AUGUSTUS	CDS	17489765	17489961	0.3	+	2	transcript_id "Ledus.S1G193900.t1"; gene_id "Ledus.S1G193900"
Ledus.S1	AUGUSTUS	exon	17489765	17489961	.	+	.	transcript_id "Ledus.S1G193900.t1"; gene_id "Ledus.S1G193900"
Ledus.S1	AUGUSTUS	stop_codon	17489962	17489964	.	+	0	transcript_id "Ledus.S1G193900.t1"; gene_id "Ledus.S1G193900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10920.t1 is derived from g4538.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	586315	590307	.	-	.	Ledus.S4G007600
Ledus.S4	AUGUSTUS	transcript	586315	590307	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	stop_codon	586312	586314	.	-	0	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	CDS	586315	586414	1	-	1	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	exon	586315	586414	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	intron	586415	586497	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	CDS	586498	586599	1	-	1	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	exon	586498	586599	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	intron	586600	586678	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	CDS	586679	586743	1	-	0	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	exon	586679	586743	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	intron	586744	586894	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	CDS	586895	587090	1	-	1	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	exon	586895	587090	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	intron	587091	587303	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	CDS	587304	587494	0.92	-	0	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	exon	587304	587494	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	intron	587495	587584	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	CDS	587585	587674	1	-	0	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	exon	587585	587674	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	intron	587675	587783	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	CDS	587784	588335	0.95	-	0	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	exon	587784	588335	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	intron	588336	588471	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	CDS	588472	588787	1	-	1	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	exon	588472	588787	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	intron	588788	588905	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	CDS	588906	589213	0.78	-	0	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	exon	588906	589213	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	intron	589214	589302	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	CDS	589303	589423	1	-	1	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	exon	589303	589423	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	intron	589424	589506	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	CDS	589507	589577	1	-	0	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	exon	589507	589577	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	intron	589578	589662	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	CDS	589663	590307	0.99	-	0	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	exon	589663	590307	.	-	.	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
Ledus.S4	AUGUSTUS	start_codon	590305	590307	.	-	0	transcript_id "Ledus.S4G007600.t1"; gene_id "Ledus.S4G007600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9473.t1 is derived from g10503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7188928	7191911	.	-	.	Ledus.S3G095000
Ledus.S3	AUGUSTUS	transcript	7188928	7191911	.	-	.	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	stop_codon	7188925	7188927	.	-	0	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	CDS	7188928	7188977	0.99	-	2	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	exon	7188928	7188977	.	-	.	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	intron	7188978	7189048	.	-	.	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	CDS	7189049	7189497	0.97	-	1	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	exon	7189049	7189497	.	-	.	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	intron	7189498	7189628	.	-	.	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	CDS	7189629	7189801	1	-	0	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	exon	7189629	7189801	.	-	.	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	intron	7189802	7190141	.	-	.	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	CDS	7190142	7191911	0.24	-	0	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	exon	7190142	7191911	.	-	.	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
Ledus.S3	AUGUSTUS	start_codon	7191909	7191911	.	-	0	transcript_id "Ledus.S3G095000.t1"; gene_id "Ledus.S3G095000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1710.t1 is derived from g8571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12022366	12022575	.	+	.	Ledus.S2G159200
Ledus.S2	AUGUSTUS	transcript	12022366	12022575	.	+	.	transcript_id "Ledus.S2G159200.t1"; gene_id "Ledus.S2G159200"
Ledus.S2	AUGUSTUS	start_codon	12022366	12022368	.	+	0	transcript_id "Ledus.S2G159200.t1"; gene_id "Ledus.S2G159200"
Ledus.S2	AUGUSTUS	CDS	12022366	12022575	0.96	+	0	transcript_id "Ledus.S2G159200.t1"; gene_id "Ledus.S2G159200"
Ledus.S2	AUGUSTUS	exon	12022366	12022575	.	+	.	transcript_id "Ledus.S2G159200.t1"; gene_id "Ledus.S2G159200"
Ledus.S2	AUGUSTUS	stop_codon	12022576	12022578	.	+	0	transcript_id "Ledus.S2G159200.t1"; gene_id "Ledus.S2G159200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12634.t1 is derived from g6256.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13537759	13538749	.	-	.	Ledus.S4G179000
Ledus.S4	AUGUSTUS	transcript	13538157	13538749	.	-	.	transcript_id "Ledus.S4G179000.t1"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	stop_codon	13538154	13538156	.	-	0	transcript_id "Ledus.S4G179000.t1"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	CDS	13538157	13538216	1	-	0	transcript_id "Ledus.S4G179000.t1"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	exon	13538157	13538216	.	-	.	transcript_id "Ledus.S4G179000.t1"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	intron	13538217	13538444	.	-	.	transcript_id "Ledus.S4G179000.t1"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	CDS	13538445	13538603	0.71	-	0	transcript_id "Ledus.S4G179000.t1"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	exon	13538445	13538603	.	-	.	transcript_id "Ledus.S4G179000.t1"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	intron	13538604	13538746	.	-	.	transcript_id "Ledus.S4G179000.t1"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	CDS	13538747	13538749	1	-	0	transcript_id "Ledus.S4G179000.t1"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	exon	13538747	13538749	.	-	.	transcript_id "Ledus.S4G179000.t1"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	start_codon	13538747	13538749	.	-	0	transcript_id "Ledus.S4G179000.t1"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	transcript	13537759	13538749	.	-	.	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	stop_codon	13537756	13537758	.	-	0	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	CDS	13537759	13537773	0.37	-	0	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	exon	13537759	13537773	.	-	.	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	intron	13537774	13538157	.	-	.	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	CDS	13538158	13538216	0.46	-	2	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	exon	13538158	13538216	.	-	.	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	intron	13538217	13538467	.	-	.	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	CDS	13538468	13538603	0.8	-	0	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	exon	13538468	13538603	.	-	.	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	intron	13538604	13538746	.	-	.	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	CDS	13538747	13538749	1	-	0	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	exon	13538747	13538749	.	-	.	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
Ledus.S4	AUGUSTUS	start_codon	13538747	13538749	.	-	0	transcript_id "Ledus.S4G179000.t2"; gene_id "Ledus.S4G179000"
# This transcript jg851.t2 is derived from g7712.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg852.t1 is derived from g7713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5678935	5680148	.	+	.	Ledus.S2G073400
Ledus.S2	AUGUSTUS	transcript	5678935	5680148	.	+	.	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	start_codon	5678935	5678937	.	+	0	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	CDS	5678935	5679522	0.78	+	0	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	exon	5678935	5679522	.	+	.	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	intron	5679523	5679661	.	+	.	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	CDS	5679662	5679723	1	+	0	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	exon	5679662	5679723	.	+	.	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	intron	5679724	5679799	.	+	.	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	CDS	5679800	5679840	1	+	1	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	exon	5679800	5679840	.	+	.	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	intron	5679841	5679933	.	+	.	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	CDS	5679934	5680148	1	+	2	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	exon	5679934	5680148	.	+	.	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
Ledus.S2	AUGUSTUS	stop_codon	5680149	5680151	.	+	0	transcript_id "Ledus.S2G073400.t1"; gene_id "Ledus.S2G073400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12231.t1 is derived from g5851.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10526540	10527886	.	-	.	Ledus.S4G138700
Ledus.S4	AUGUSTUS	transcript	10526540	10527886	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	stop_codon	10526537	10526539	.	-	0	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	CDS	10526540	10526652	0.99	-	2	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	exon	10526540	10526652	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	intron	10526653	10526740	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	CDS	10526741	10526858	1	-	0	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	exon	10526741	10526858	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	intron	10526859	10526946	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	CDS	10526947	10527078	1	-	0	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	exon	10526947	10527078	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	intron	10527079	10527161	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	CDS	10527162	10527260	1	-	0	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	exon	10527162	10527260	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	intron	10527261	10527334	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	CDS	10527335	10527509	1	-	1	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	exon	10527335	10527509	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	intron	10527510	10527588	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	CDS	10527589	10527692	1	-	0	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	exon	10527589	10527692	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	intron	10527693	10527763	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	CDS	10527764	10527886	0.94	-	0	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	exon	10527764	10527886	.	-	.	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
Ledus.S4	AUGUSTUS	start_codon	10527884	10527886	.	-	0	transcript_id "Ledus.S4G138700.t1"; gene_id "Ledus.S4G138700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1249.t1 is derived from g8110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8872451	8872788	.	+	.	Ledus.S2G113100
Ledus.S2	AUGUSTUS	transcript	8872451	8872788	.	+	.	transcript_id "Ledus.S2G113100.t1"; gene_id "Ledus.S2G113100"
Ledus.S2	AUGUSTUS	start_codon	8872451	8872453	.	+	0	transcript_id "Ledus.S2G113100.t1"; gene_id "Ledus.S2G113100"
Ledus.S2	AUGUSTUS	CDS	8872451	8872554	0.59	+	0	transcript_id "Ledus.S2G113100.t1"; gene_id "Ledus.S2G113100"
Ledus.S2	AUGUSTUS	exon	8872451	8872554	.	+	.	transcript_id "Ledus.S2G113100.t1"; gene_id "Ledus.S2G113100"
Ledus.S2	AUGUSTUS	intron	8872555	8872664	.	+	.	transcript_id "Ledus.S2G113100.t1"; gene_id "Ledus.S2G113100"
Ledus.S2	AUGUSTUS	CDS	8872665	8872788	0.72	+	1	transcript_id "Ledus.S2G113100.t1"; gene_id "Ledus.S2G113100"
Ledus.S2	AUGUSTUS	exon	8872665	8872788	.	+	.	transcript_id "Ledus.S2G113100.t1"; gene_id "Ledus.S2G113100"
Ledus.S2	AUGUSTUS	stop_codon	8872789	8872791	.	+	0	transcript_id "Ledus.S2G113100.t1"; gene_id "Ledus.S2G113100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4855.t1 is derived from g2293.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20228708	20229652	.	+	.	Ledus.S1G227600
Ledus.S1	AUGUSTUS	transcript	20228708	20229652	.	+	.	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	start_codon	20228708	20228710	.	+	0	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	CDS	20228708	20228781	0.6	+	0	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	exon	20228708	20228781	.	+	.	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	intron	20228782	20228921	.	+	.	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	CDS	20228922	20228958	0.65	+	1	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	exon	20228922	20228958	.	+	.	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	intron	20228959	20229397	.	+	.	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	CDS	20229398	20229436	0.62	+	0	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	exon	20229398	20229436	.	+	.	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	intron	20229437	20229550	.	+	.	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	CDS	20229551	20229652	0.77	+	0	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	exon	20229551	20229652	.	+	.	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
Ledus.S1	AUGUSTUS	stop_codon	20229653	20229655	.	+	0	transcript_id "Ledus.S1G227600.t1"; gene_id "Ledus.S1G227600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4459.t1 is derived from g1895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17185489	17186819	.	-	.	Ledus.S1G188000
Ledus.S1	AUGUSTUS	transcript	17185489	17186819	.	-	.	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	stop_codon	17185486	17185488	.	-	0	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	CDS	17185489	17185861	1	-	1	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	exon	17185489	17185861	.	-	.	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	intron	17185862	17185999	.	-	.	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	CDS	17186000	17186151	1	-	0	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	exon	17186000	17186151	.	-	.	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	intron	17186152	17186243	.	-	.	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	CDS	17186244	17186348	1	-	0	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	exon	17186244	17186348	.	-	.	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	intron	17186349	17186434	.	-	.	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	CDS	17186435	17186611	1	-	0	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	exon	17186435	17186611	.	-	.	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	intron	17186612	17186774	.	-	.	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	CDS	17186775	17186819	0.87	-	0	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	exon	17186775	17186819	.	-	.	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
Ledus.S1	AUGUSTUS	start_codon	17186817	17186819	.	-	0	transcript_id "Ledus.S1G188000.t1"; gene_id "Ledus.S1G188000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10275.t1 is derived from g11305.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13969112	13970561	.	-	.	Ledus.S3G175200
Ledus.S3	AUGUSTUS	transcript	13969112	13970561	.	-	.	transcript_id "Ledus.S3G175200.t1"; gene_id "Ledus.S3G175200"
Ledus.S3	AUGUSTUS	stop_codon	13969109	13969111	.	-	0	transcript_id "Ledus.S3G175200.t1"; gene_id "Ledus.S3G175200"
Ledus.S3	AUGUSTUS	CDS	13969112	13970218	0.98	-	0	transcript_id "Ledus.S3G175200.t1"; gene_id "Ledus.S3G175200"
Ledus.S3	AUGUSTUS	exon	13969112	13970218	.	-	.	transcript_id "Ledus.S3G175200.t1"; gene_id "Ledus.S3G175200"
Ledus.S3	AUGUSTUS	intron	13970219	13970373	.	-	.	transcript_id "Ledus.S3G175200.t1"; gene_id "Ledus.S3G175200"
Ledus.S3	AUGUSTUS	CDS	13970374	13970436	1	-	0	transcript_id "Ledus.S3G175200.t1"; gene_id "Ledus.S3G175200"
Ledus.S3	AUGUSTUS	exon	13970374	13970436	.	-	.	transcript_id "Ledus.S3G175200.t1"; gene_id "Ledus.S3G175200"
Ledus.S3	AUGUSTUS	intron	13970437	13970531	.	-	.	transcript_id "Ledus.S3G175200.t1"; gene_id "Ledus.S3G175200"
Ledus.S3	AUGUSTUS	CDS	13970532	13970561	1	-	0	transcript_id "Ledus.S3G175200.t1"; gene_id "Ledus.S3G175200"
Ledus.S3	AUGUSTUS	exon	13970532	13970561	.	-	.	transcript_id "Ledus.S3G175200.t1"; gene_id "Ledus.S3G175200"
Ledus.S3	AUGUSTUS	start_codon	13970559	13970561	.	-	0	transcript_id "Ledus.S3G175200.t1"; gene_id "Ledus.S3G175200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12232.t1 is derived from g5852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10527915	10529008	.	+	.	Ledus.S4G138800
Ledus.S4	AUGUSTUS	transcript	10527915	10529008	.	+	.	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	start_codon	10527915	10527917	.	+	0	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	CDS	10527915	10527926	0.94	+	0	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	exon	10527915	10527926	.	+	.	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	intron	10527927	10528173	.	+	.	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	CDS	10528174	10528341	0.96	+	0	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	exon	10528174	10528341	.	+	.	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	intron	10528342	10528417	.	+	.	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	CDS	10528418	10528711	1	+	0	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	exon	10528418	10528711	.	+	.	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	intron	10528712	10528791	.	+	.	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	CDS	10528792	10528849	1	+	0	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	exon	10528792	10528849	.	+	.	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	intron	10528850	10528943	.	+	.	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	CDS	10528944	10529008	1	+	2	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	exon	10528944	10529008	.	+	.	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
Ledus.S4	AUGUSTUS	stop_codon	10529009	10529011	.	+	0	transcript_id "Ledus.S4G138800.t1"; gene_id "Ledus.S4G138800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8065.t1 is derived from g12736.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9025017	9026530	.	-	.	Ledus.S5G084300
Ledus.S5	AUGUSTUS	transcript	9025017	9026530	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	stop_codon	9025014	9025016	.	-	0	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	CDS	9025017	9025103	0.99	-	0	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	exon	9025017	9025103	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	intron	9025104	9025236	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	CDS	9025237	9025326	1	-	0	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	exon	9025237	9025326	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	intron	9025327	9025465	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	CDS	9025466	9025570	1	-	0	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	exon	9025466	9025570	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	intron	9025571	9025716	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	CDS	9025717	9025791	1	-	0	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	exon	9025717	9025791	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	intron	9025792	9025934	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	CDS	9025935	9025962	1	-	1	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	exon	9025935	9025962	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	intron	9025963	9026114	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	CDS	9026115	9026167	1	-	0	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	exon	9026115	9026167	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	intron	9026168	9026321	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	CDS	9026322	9026387	0.83	-	0	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	exon	9026322	9026387	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	intron	9026388	9026527	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	CDS	9026528	9026530	0.49	-	0	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	exon	9026528	9026530	.	-	.	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
Ledus.S5	AUGUSTUS	start_codon	9026528	9026530	.	-	0	transcript_id "Ledus.S5G084300.t1"; gene_id "Ledus.S5G084300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6438.t1 is derived from g3881.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31246202	31247836	.	-	.	Ledus.S1G385900
Ledus.S1	AUGUSTUS	transcript	31246202	31247836	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	stop_codon	31246199	31246201	.	-	0	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	CDS	31246202	31246259	0.97	-	1	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	exon	31246202	31246259	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	intron	31246260	31246366	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	CDS	31246367	31246489	1	-	1	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	exon	31246367	31246489	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	intron	31246490	31246571	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	CDS	31246572	31246718	1	-	1	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	exon	31246572	31246718	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	intron	31246719	31246801	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	CDS	31246802	31246912	0.99	-	1	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	exon	31246802	31246912	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	intron	31246913	31247016	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	CDS	31247017	31247161	1	-	2	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	exon	31247017	31247161	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	intron	31247162	31247300	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	CDS	31247301	31247400	1	-	0	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	exon	31247301	31247400	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	intron	31247401	31247794	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	CDS	31247795	31247836	1	-	0	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	exon	31247795	31247836	.	-	.	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
Ledus.S1	AUGUSTUS	start_codon	31247834	31247836	.	-	0	transcript_id "Ledus.S1G385900.t1"; gene_id "Ledus.S1G385900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1855.t1 is derived from g8718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12966158	12966902	.	-	.	Ledus.S2G173700
Ledus.S2	AUGUSTUS	transcript	12966158	12966902	.	-	.	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	stop_codon	12966155	12966157	.	-	0	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	CDS	12966158	12966216	1	-	2	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	exon	12966158	12966216	.	-	.	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	intron	12966217	12966301	.	-	.	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	CDS	12966302	12966343	1	-	2	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	exon	12966302	12966343	.	-	.	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	intron	12966344	12966449	.	-	.	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	CDS	12966450	12966534	1	-	0	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	exon	12966450	12966534	.	-	.	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	intron	12966535	12966611	.	-	.	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	CDS	12966612	12966902	0.64	-	0	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	exon	12966612	12966902	.	-	.	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
Ledus.S2	AUGUSTUS	start_codon	12966900	12966902	.	-	0	transcript_id "Ledus.S2G173700.t1"; gene_id "Ledus.S2G173700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5150.t1 is derived from g2589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21976647	21977771	.	-	.	Ledus.S1G257100
Ledus.S1	AUGUSTUS	transcript	21976647	21977771	.	-	.	transcript_id "Ledus.S1G257100.t1"; gene_id "Ledus.S1G257100"
Ledus.S1	AUGUSTUS	stop_codon	21976644	21976646	.	-	0	transcript_id "Ledus.S1G257100.t1"; gene_id "Ledus.S1G257100"
Ledus.S1	AUGUSTUS	CDS	21976647	21976808	1	-	0	transcript_id "Ledus.S1G257100.t1"; gene_id "Ledus.S1G257100"
Ledus.S1	AUGUSTUS	exon	21976647	21976808	.	-	.	transcript_id "Ledus.S1G257100.t1"; gene_id "Ledus.S1G257100"
Ledus.S1	AUGUSTUS	intron	21976809	21976886	.	-	.	transcript_id "Ledus.S1G257100.t1"; gene_id "Ledus.S1G257100"
Ledus.S1	AUGUSTUS	CDS	21976887	21977771	1	-	0	transcript_id "Ledus.S1G257100.t1"; gene_id "Ledus.S1G257100"
Ledus.S1	AUGUSTUS	exon	21976887	21977771	.	-	.	transcript_id "Ledus.S1G257100.t1"; gene_id "Ledus.S1G257100"
Ledus.S1	AUGUSTUS	start_codon	21977769	21977771	.	-	0	transcript_id "Ledus.S1G257100.t1"; gene_id "Ledus.S1G257100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11935.t1 is derived from g5554.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7872133	7874880	.	+	.	Ledus.S4G109100
Ledus.S4	AUGUSTUS	transcript	7872133	7874880	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	start_codon	7872133	7872135	.	+	0	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	CDS	7872133	7872837	0.79	+	0	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	exon	7872133	7872837	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	intron	7872838	7872978	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	CDS	7872979	7873263	0.92	+	0	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	exon	7872979	7873263	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	intron	7873264	7873360	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	CDS	7873361	7873579	1	+	0	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	exon	7873361	7873579	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	intron	7873580	7873703	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	CDS	7873704	7873883	1	+	0	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	exon	7873704	7873883	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	intron	7873884	7873982	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	CDS	7873983	7874474	0.99	+	0	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	exon	7873983	7874474	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	intron	7874475	7874561	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	CDS	7874562	7874723	0.97	+	0	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	exon	7874562	7874723	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	intron	7874724	7874832	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	CDS	7874833	7874880	0.97	+	0	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	exon	7874833	7874880	.	+	.	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
Ledus.S4	AUGUSTUS	stop_codon	7874881	7874883	.	+	0	transcript_id "Ledus.S4G109100.t1"; gene_id "Ledus.S4G109100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3639.t1 is derived from g1075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10327893	10329370	.	-	.	Ledus.S1G106000
Ledus.S1	AUGUSTUS	transcript	10327893	10329370	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	stop_codon	10327890	10327892	.	-	0	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	CDS	10327893	10327929	0.92	-	1	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	exon	10327893	10327929	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	intron	10327930	10328012	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	CDS	10328013	10328078	1	-	1	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	exon	10328013	10328078	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	intron	10328079	10328177	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	CDS	10328178	10328260	1	-	0	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	exon	10328178	10328260	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	intron	10328261	10328342	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	CDS	10328343	10328405	1	-	0	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	exon	10328343	10328405	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	intron	10328406	10328499	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	CDS	10328500	10328568	1	-	0	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	exon	10328500	10328568	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	intron	10328569	10328654	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	CDS	10328655	10328708	1	-	0	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	exon	10328655	10328708	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	intron	10328709	10328798	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	CDS	10328799	10328879	1	-	0	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	exon	10328799	10328879	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	intron	10328880	10328956	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	CDS	10328957	10329022	1	-	0	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	exon	10328957	10329022	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	intron	10329023	10329109	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	CDS	10329110	10329370	0.65	-	0	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	exon	10329110	10329370	.	-	.	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
Ledus.S1	AUGUSTUS	start_codon	10329368	10329370	.	-	0	transcript_id "Ledus.S1G106000.t1"; gene_id "Ledus.S1G106000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4119.t1 is derived from g1555.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14783248	14784210	.	+	.	Ledus.S1G154000
Ledus.S1	AUGUSTUS	transcript	14783248	14784210	.	+	.	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	start_codon	14783248	14783250	.	+	0	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	CDS	14783248	14783448	0.78	+	0	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	exon	14783248	14783448	.	+	.	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	intron	14783449	14783653	.	+	.	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	CDS	14783654	14783715	1	+	0	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	exon	14783654	14783715	.	+	.	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	intron	14783716	14783815	.	+	.	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	CDS	14783816	14783856	1	+	1	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	exon	14783816	14783856	.	+	.	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	intron	14783857	14783995	.	+	.	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	CDS	14783996	14784210	0.81	+	2	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	exon	14783996	14784210	.	+	.	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
Ledus.S1	AUGUSTUS	stop_codon	14784211	14784213	.	+	0	transcript_id "Ledus.S1G154000.t1"; gene_id "Ledus.S1G154000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2736.t1 is derived from g170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2701696	2702544	.	-	.	Ledus.S1G015700
Ledus.S1	AUGUSTUS	transcript	2701696	2702544	.	-	.	transcript_id "Ledus.S1G015700.t1"; gene_id "Ledus.S1G015700"
Ledus.S1	AUGUSTUS	stop_codon	2701693	2701695	.	-	0	transcript_id "Ledus.S1G015700.t1"; gene_id "Ledus.S1G015700"
Ledus.S1	AUGUSTUS	CDS	2701696	2702544	0.83	-	0	transcript_id "Ledus.S1G015700.t1"; gene_id "Ledus.S1G015700"
Ledus.S1	AUGUSTUS	exon	2701696	2702544	.	-	.	transcript_id "Ledus.S1G015700.t1"; gene_id "Ledus.S1G015700"
Ledus.S1	AUGUSTUS	start_codon	2702542	2702544	.	-	0	transcript_id "Ledus.S1G015700.t1"; gene_id "Ledus.S1G015700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10369.t1 is derived from g11399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14467672	14471219	.	+	.	Ledus.S3G184600
Ledus.S3	AUGUSTUS	transcript	14467672	14471219	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	start_codon	14467672	14467674	.	+	0	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14467672	14467688	0.17	+	0	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14467672	14467688	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14467689	14467850	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14467851	14467941	0.72	+	1	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14467851	14467941	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14467942	14468041	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14468042	14468126	1	+	0	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14468042	14468126	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14468127	14468429	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14468430	14468514	1	+	2	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14468430	14468514	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14468515	14468744	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14468745	14468814	1	+	1	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14468745	14468814	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14468815	14469150	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14469151	14469220	1	+	0	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14469151	14469220	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14469221	14469430	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14469431	14469476	0.85	+	2	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14469431	14469476	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14469477	14469590	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14469591	14469852	0.47	+	1	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14469591	14469852	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14469853	14469958	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14469959	14470164	0.4	+	0	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14469959	14470164	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14470165	14470304	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14470305	14470382	1	+	1	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14470305	14470382	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14470383	14470478	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14470479	14470548	0.96	+	1	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14470479	14470548	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14470549	14470658	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14470659	14470739	0.94	+	0	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14470659	14470739	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14470740	14471039	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14471040	14471105	0.33	+	0	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14471040	14471105	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	intron	14471106	14471201	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	CDS	14471202	14471219	0.57	+	0	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	exon	14471202	14471219	.	+	.	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
Ledus.S3	AUGUSTUS	stop_codon	14471220	14471222	.	+	0	transcript_id "Ledus.S3G184600.t1"; gene_id "Ledus.S3G184600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13075.t1 is derived from g6885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5069187	5069600	.	+	.	Ledus.S6G013700
Ledus.S6	AUGUSTUS	transcript	5069187	5069600	.	+	.	transcript_id "Ledus.S6G013700.t1"; gene_id "Ledus.S6G013700"
Ledus.S6	AUGUSTUS	start_codon	5069187	5069189	.	+	0	transcript_id "Ledus.S6G013700.t1"; gene_id "Ledus.S6G013700"
Ledus.S6	AUGUSTUS	CDS	5069187	5069600	0.86	+	0	transcript_id "Ledus.S6G013700.t1"; gene_id "Ledus.S6G013700"
Ledus.S6	AUGUSTUS	exon	5069187	5069600	.	+	.	transcript_id "Ledus.S6G013700.t1"; gene_id "Ledus.S6G013700"
Ledus.S6	AUGUSTUS	stop_codon	5069601	5069603	.	+	0	transcript_id "Ledus.S6G013700.t1"; gene_id "Ledus.S6G013700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9019.t1 is derived from g10049.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3888194	3889353	.	-	.	Ledus.S3G049600
Ledus.S3	AUGUSTUS	transcript	3888194	3889353	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	stop_codon	3888191	3888193	.	-	0	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	CDS	3888194	3888265	0.78	-	0	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	exon	3888194	3888265	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	intron	3888266	3888381	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	CDS	3888382	3888431	0.91	-	2	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	exon	3888382	3888431	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	intron	3888432	3888525	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	CDS	3888526	3888607	1	-	0	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	exon	3888526	3888607	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	intron	3888608	3888691	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	CDS	3888692	3888762	1	-	2	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	exon	3888692	3888762	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	intron	3888763	3888921	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	CDS	3888922	3888992	1	-	1	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	exon	3888922	3888992	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	intron	3888993	3889087	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	CDS	3889088	3889167	1	-	0	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	exon	3889088	3889167	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	intron	3889168	3889248	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	CDS	3889249	3889353	0.82	-	0	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	exon	3889249	3889353	.	-	.	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
Ledus.S3	AUGUSTUS	start_codon	3889351	3889353	.	-	0	transcript_id "Ledus.S3G049600.t1"; gene_id "Ledus.S3G049600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1061.t1 is derived from g7922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7190163	7190441	.	-	.	Ledus.S2G094300
Ledus.S2	AUGUSTUS	transcript	7190163	7190441	.	-	.	transcript_id "Ledus.S2G094300.t1"; gene_id "Ledus.S2G094300"
Ledus.S2	AUGUSTUS	stop_codon	7190160	7190162	.	-	0	transcript_id "Ledus.S2G094300.t1"; gene_id "Ledus.S2G094300"
Ledus.S2	AUGUSTUS	CDS	7190163	7190441	0.48	-	0	transcript_id "Ledus.S2G094300.t1"; gene_id "Ledus.S2G094300"
Ledus.S2	AUGUSTUS	exon	7190163	7190441	.	-	.	transcript_id "Ledus.S2G094300.t1"; gene_id "Ledus.S2G094300"
Ledus.S2	AUGUSTUS	start_codon	7190439	7190441	.	-	0	transcript_id "Ledus.S2G094300.t1"; gene_id "Ledus.S2G094300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11144.t1 is derived from g4762.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2142813	2145521	.	-	.	Ledus.S4G030000
Ledus.S4	AUGUSTUS	transcript	2142813	2145521	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	stop_codon	2142810	2142812	.	-	0	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	CDS	2142813	2142997	0.46	-	2	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	exon	2142813	2142997	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	intron	2142998	2143080	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	CDS	2143081	2143135	1	-	0	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	exon	2143081	2143135	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	intron	2143136	2143348	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	CDS	2143349	2143459	0.84	-	0	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	exon	2143349	2143459	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	intron	2143460	2144024	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	CDS	2144025	2144174	0.99	-	0	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	exon	2144025	2144174	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	intron	2144175	2144317	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	CDS	2144318	2144510	1	-	1	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	exon	2144318	2144510	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	intron	2144511	2144631	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	CDS	2144632	2144706	1	-	1	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	exon	2144632	2144706	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	intron	2144707	2144919	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	CDS	2144920	2144945	1	-	0	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	exon	2144920	2144945	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	intron	2144946	2145127	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	CDS	2145128	2145184	1	-	0	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	exon	2145128	2145184	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	intron	2145185	2145458	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	CDS	2145459	2145521	0.92	-	0	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	exon	2145459	2145521	.	-	.	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
Ledus.S4	AUGUSTUS	start_codon	2145519	2145521	.	-	0	transcript_id "Ledus.S4G030000.t1"; gene_id "Ledus.S4G030000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1696.t1 is derived from g8557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11946000	11949252	.	-	.	Ledus.S2G157800
Ledus.S2	AUGUSTUS	transcript	11946000	11949252	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	stop_codon	11945997	11945999	.	-	0	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	CDS	11946000	11946019	1	-	2	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	exon	11946000	11946019	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	intron	11946020	11946166	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	CDS	11946167	11946271	1	-	2	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	exon	11946167	11946271	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	intron	11946272	11946439	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	CDS	11946440	11948021	0.8	-	0	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	exon	11946440	11948021	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	intron	11948022	11948115	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	CDS	11948116	11948255	0.84	-	2	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	exon	11948116	11948255	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	intron	11948256	11948378	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	CDS	11948379	11948441	0.78	-	2	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	exon	11948379	11948441	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	intron	11948442	11948613	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	CDS	11948614	11948673	0.93	-	2	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	exon	11948614	11948673	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	intron	11948674	11948761	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	CDS	11948762	11948804	1	-	0	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	exon	11948762	11948804	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	intron	11948805	11948901	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	CDS	11948902	11949252	1	-	0	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	exon	11948902	11949252	.	-	.	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
Ledus.S2	AUGUSTUS	start_codon	11949250	11949252	.	-	0	transcript_id "Ledus.S2G157800.t1"; gene_id "Ledus.S2G157800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1253.t1 is derived from g8114.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8900479	8902332	.	+	.	Ledus.S2G113500
Ledus.S2	AUGUSTUS	transcript	8900479	8902332	.	+	.	transcript_id "Ledus.S2G113500.t1"; gene_id "Ledus.S2G113500"
Ledus.S2	AUGUSTUS	start_codon	8900479	8900481	.	+	0	transcript_id "Ledus.S2G113500.t1"; gene_id "Ledus.S2G113500"
Ledus.S2	AUGUSTUS	CDS	8900479	8902332	0.76	+	0	transcript_id "Ledus.S2G113500.t1"; gene_id "Ledus.S2G113500"
Ledus.S2	AUGUSTUS	exon	8900479	8902332	.	+	.	transcript_id "Ledus.S2G113500.t1"; gene_id "Ledus.S2G113500"
Ledus.S2	AUGUSTUS	stop_codon	8902333	8902335	.	+	0	transcript_id "Ledus.S2G113500.t1"; gene_id "Ledus.S2G113500"
# This transcript jg6190.t2 is derived from g3633.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6191.t1 is derived from g3634.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29473039	29478231	.	+	.	Ledus.S1G361200
Ledus.S1	AUGUSTUS	transcript	29473039	29478231	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	start_codon	29473039	29473041	.	+	0	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29473039	29473041	1	+	0	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29473039	29473041	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29473042	29473134	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29473135	29473242	1	+	0	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29473135	29473242	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29473243	29473319	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29473320	29473417	1	+	0	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29473320	29473417	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29473418	29473534	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29473535	29473637	1	+	1	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29473535	29473637	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29473638	29473699	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29473700	29473711	1	+	0	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29473700	29473711	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29473712	29473980	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29473981	29474036	0.76	+	0	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29473981	29474036	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29474037	29474209	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29474210	29474230	0.92	+	1	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29474210	29474230	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29474231	29474619	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29474620	29474642	0.75	+	1	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29474620	29474642	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29474643	29474718	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29474719	29474976	0.24	+	2	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29474719	29474976	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29474977	29475059	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29475060	29475141	0.34	+	2	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29475060	29475141	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29475142	29476023	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29476024	29476099	0.83	+	1	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29476024	29476099	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29476100	29476255	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29476256	29476557	1	+	0	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29476256	29476557	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29476558	29476653	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29476654	29476755	1	+	1	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29476654	29476755	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29476756	29476844	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29476845	29478231	1	+	1	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29476845	29478231	.	+	.	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	stop_codon	29478232	29478234	.	+	0	transcript_id "Ledus.S1G361200.t1"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	transcript	29473039	29478231	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	start_codon	29473039	29473041	.	+	0	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29473039	29473041	1	+	0	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29473039	29473041	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29473042	29473134	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29473135	29473242	1	+	0	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29473135	29473242	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29473243	29473319	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29473320	29473417	1	+	0	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29473320	29473417	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29473418	29473534	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29473535	29473687	1	+	1	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29473535	29473687	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29473688	29473980	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29473981	29474082	0.34	+	1	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29473981	29474082	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29474083	29474209	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29474210	29474230	0.34	+	1	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29474210	29474230	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29474231	29474619	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29474620	29474642	0.68	+	1	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29474620	29474642	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29474643	29474718	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29474719	29474976	0.17	+	2	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29474719	29474976	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29474977	29475059	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29475060	29475141	0.32	+	2	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29475060	29475141	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29475142	29476023	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29476024	29476099	0.82	+	1	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29476024	29476099	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29476100	29476255	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29476256	29476557	1	+	0	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29476256	29476557	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29476558	29476653	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29476654	29476755	1	+	1	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29476654	29476755	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	intron	29476756	29476844	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	CDS	29476845	29478231	1	+	1	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	exon	29476845	29478231	.	+	.	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
Ledus.S1	AUGUSTUS	stop_codon	29478232	29478234	.	+	0	transcript_id "Ledus.S1G361200.t2"; gene_id "Ledus.S1G361200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6282.t1 is derived from g3725.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30112124	30112690	.	-	.	Ledus.S1G370300
Ledus.S1	AUGUSTUS	transcript	30112124	30112690	.	-	.	transcript_id "Ledus.S1G370300.t1"; gene_id "Ledus.S1G370300"
Ledus.S1	AUGUSTUS	stop_codon	30112121	30112123	.	-	0	transcript_id "Ledus.S1G370300.t1"; gene_id "Ledus.S1G370300"
Ledus.S1	AUGUSTUS	CDS	30112124	30112690	0.97	-	0	transcript_id "Ledus.S1G370300.t1"; gene_id "Ledus.S1G370300"
Ledus.S1	AUGUSTUS	exon	30112124	30112690	.	-	.	transcript_id "Ledus.S1G370300.t1"; gene_id "Ledus.S1G370300"
Ledus.S1	AUGUSTUS	start_codon	30112688	30112690	.	-	0	transcript_id "Ledus.S1G370300.t1"; gene_id "Ledus.S1G370300"
# This transcript jg12269.t2 is derived from g5889.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12270.t1 is derived from g5890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10719304	10722754	.	+	.	Ledus.S4G142600
Ledus.S4	AUGUSTUS	transcript	10719304	10722754	.	+	.	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	start_codon	10719304	10719306	.	+	0	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	CDS	10719304	10719714	0.97	+	0	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	exon	10719304	10719714	.	+	.	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	intron	10719715	10719821	.	+	.	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	CDS	10719822	10720812	0.71	+	0	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	exon	10719822	10720812	.	+	.	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	intron	10720813	10720939	.	+	.	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	CDS	10720940	10720982	0.54	+	2	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	exon	10720940	10720982	.	+	.	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	intron	10720983	10721448	.	+	.	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	CDS	10721449	10721516	0.56	+	1	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	exon	10721449	10721516	.	+	.	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	intron	10721517	10721603	.	+	.	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	CDS	10721604	10722754	0.93	+	2	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	exon	10721604	10722754	.	+	.	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
Ledus.S4	AUGUSTUS	stop_codon	10722755	10722757	.	+	0	transcript_id "Ledus.S4G142600.t1"; gene_id "Ledus.S4G142600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4637.t1 is derived from g2074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18563907	18564950	.	-	.	Ledus.S1G205800
Ledus.S1	AUGUSTUS	transcript	18563907	18564950	.	-	.	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	stop_codon	18563904	18563906	.	-	0	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	CDS	18563907	18563908	0.97	-	2	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	exon	18563907	18563908	.	-	.	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	intron	18563909	18563997	.	-	.	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	CDS	18563998	18564034	0.93	-	0	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	exon	18563998	18564034	.	-	.	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	intron	18564035	18564117	.	-	.	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	CDS	18564118	18564369	0.82	-	0	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	exon	18564118	18564369	.	-	.	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	intron	18564370	18564656	.	-	.	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	CDS	18564657	18564950	0.8	-	0	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	exon	18564657	18564950	.	-	.	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
Ledus.S1	AUGUSTUS	start_codon	18564948	18564950	.	-	0	transcript_id "Ledus.S1G205800.t1"; gene_id "Ledus.S1G205800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4431.t1 is derived from g1867.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17094378	17094902	.	+	.	Ledus.S1G185200
Ledus.S1	AUGUSTUS	transcript	17094378	17094902	.	+	.	transcript_id "Ledus.S1G185200.t1"; gene_id "Ledus.S1G185200"
Ledus.S1	AUGUSTUS	start_codon	17094378	17094380	.	+	0	transcript_id "Ledus.S1G185200.t1"; gene_id "Ledus.S1G185200"
Ledus.S1	AUGUSTUS	CDS	17094378	17094902	0.3	+	0	transcript_id "Ledus.S1G185200.t1"; gene_id "Ledus.S1G185200"
Ledus.S1	AUGUSTUS	exon	17094378	17094902	.	+	.	transcript_id "Ledus.S1G185200.t1"; gene_id "Ledus.S1G185200"
Ledus.S1	AUGUSTUS	stop_codon	17094903	17094905	.	+	0	transcript_id "Ledus.S1G185200.t1"; gene_id "Ledus.S1G185200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5945.t1 is derived from g3388.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27991978	27994040	.	-	.	Ledus.S1G336600
Ledus.S1	AUGUSTUS	transcript	27991978	27994040	.	-	.	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	stop_codon	27991975	27991977	.	-	0	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	CDS	27991978	27992058	0.37	-	0	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	exon	27991978	27992058	.	-	.	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	intron	27992059	27992135	.	-	.	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	CDS	27992136	27992243	0.97	-	0	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	exon	27992136	27992243	.	-	.	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	intron	27992244	27992380	.	-	.	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	CDS	27992381	27992460	1	-	2	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	exon	27992381	27992460	.	-	.	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	intron	27992461	27992536	.	-	.	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	CDS	27992537	27994040	0.66	-	0	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	exon	27992537	27994040	.	-	.	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
Ledus.S1	AUGUSTUS	start_codon	27994038	27994040	.	-	0	transcript_id "Ledus.S1G336600.t1"; gene_id "Ledus.S1G336600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6500.t1 is derived from g3943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31651548	31655662	.	-	.	Ledus.S1G392100
Ledus.S1	AUGUSTUS	transcript	31651548	31655662	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	stop_codon	31651545	31651547	.	-	0	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31651548	31651856	1	-	0	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31651548	31651856	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31651857	31651942	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31651943	31652069	1	-	1	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31651943	31652069	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31652070	31652154	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31652155	31652344	1	-	2	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31652155	31652344	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31652345	31652425	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31652426	31652494	1	-	2	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31652426	31652494	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31652495	31652579	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31652580	31652706	1	-	0	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31652580	31652706	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31652707	31652800	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31652801	31653033	1	-	2	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31652801	31653033	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31653034	31653108	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31653109	31653395	1	-	1	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31653109	31653395	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31653396	31653489	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31653490	31653558	1	-	1	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31653490	31653558	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31653559	31653671	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31653672	31653743	1	-	1	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31653672	31653743	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31653744	31653820	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31653821	31653892	1	-	1	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31653821	31653892	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31653893	31653972	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31653973	31654087	1	-	2	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31653973	31654087	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31654088	31654158	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31654159	31654418	1	-	1	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31654159	31654418	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31654419	31654514	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31654515	31654555	0.6	-	0	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31654515	31654555	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31654556	31654641	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31654642	31654780	0.56	-	1	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31654642	31654780	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31654781	31654860	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31654861	31655129	1	-	0	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31654861	31655129	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31655130	31655216	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31655217	31655506	1	-	2	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31655217	31655506	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	intron	31655507	31655586	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	CDS	31655587	31655662	0.99	-	0	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	exon	31655587	31655662	.	-	.	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
Ledus.S1	AUGUSTUS	start_codon	31655660	31655662	.	-	0	transcript_id "Ledus.S1G392100.t1"; gene_id "Ledus.S1G392100"
# This transcript jg11103.t2 is derived from g4721.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11104.t1 is derived from g4722.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1847356	1850537	.	-	.	Ledus.S4G026000
Ledus.S4	AUGUSTUS	transcript	1847356	1850537	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	stop_codon	1847353	1847355	.	-	0	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1847356	1847409	1	-	0	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1847356	1847409	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1847410	1847547	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1847548	1847669	1	-	2	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1847548	1847669	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1847670	1847746	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1847747	1847953	1	-	2	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1847747	1847953	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1847954	1848042	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848043	1848175	1	-	0	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848043	1848175	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1848176	1848292	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848293	1848451	0.99	-	0	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848293	1848451	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1848452	1848538	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848539	1848589	1	-	0	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848539	1848589	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1848590	1848773	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848774	1848833	1	-	0	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848774	1848833	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1848834	1848969	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848970	1849093	1	-	1	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848970	1849093	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849094	1849192	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1849193	1849272	1	-	0	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1849193	1849272	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849273	1849365	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1849366	1849449	1	-	0	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1849366	1849449	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849450	1849585	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1849586	1849661	1	-	1	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1849586	1849661	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849662	1849743	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1849744	1849940	1	-	0	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1849744	1849940	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849941	1850077	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1850078	1850147	0.92	-	1	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1850078	1850147	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1850148	1850265	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1850266	1850537	0.73	-	0	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1850266	1850537	.	-	.	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	start_codon	1850535	1850537	.	-	0	transcript_id "Ledus.S4G026000.t1"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	transcript	1847356	1850537	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	stop_codon	1847353	1847355	.	-	0	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1847356	1847409	1	-	0	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1847356	1847409	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1847410	1847547	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1847548	1847648	1	-	2	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1847548	1847648	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1847649	1847746	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1847747	1847953	1	-	2	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1847747	1847953	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1847954	1848042	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848043	1848175	1	-	0	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848043	1848175	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1848176	1848292	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848293	1848451	0.99	-	0	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848293	1848451	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1848452	1848538	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848539	1848589	1	-	0	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848539	1848589	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1848590	1848773	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848774	1848833	1	-	0	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848774	1848833	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1848834	1848969	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848970	1849093	1	-	1	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848970	1849093	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849094	1849192	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1849193	1849272	1	-	0	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1849193	1849272	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849273	1849365	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1849366	1849449	1	-	0	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1849366	1849449	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849450	1849585	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1849586	1849661	1	-	1	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1849586	1849661	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849662	1849743	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1849744	1849940	1	-	0	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1849744	1849940	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849941	1850077	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1850078	1850147	0.91	-	1	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1850078	1850147	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1850148	1850265	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1850266	1850537	0.64	-	0	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1850266	1850537	.	-	.	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	start_codon	1850535	1850537	.	-	0	transcript_id "Ledus.S4G026000.t2"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	transcript	1847356	1850537	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	stop_codon	1847353	1847355	.	-	0	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1847356	1847409	1	-	0	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1847356	1847409	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1847410	1847547	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1847548	1847669	1	-	2	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1847548	1847669	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1847670	1847746	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1847747	1847953	1	-	2	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1847747	1847953	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1847954	1848020	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848021	1848098	0.96	-	2	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848021	1848098	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1848099	1848315	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848316	1848451	0.97	-	0	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848316	1848451	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1848452	1848538	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848539	1848589	1	-	0	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848539	1848589	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1848590	1848773	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848774	1848833	1	-	0	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848774	1848833	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1848834	1848969	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1848970	1849093	1	-	1	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1848970	1849093	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849094	1849192	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1849193	1849272	1	-	0	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1849193	1849272	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849273	1849365	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1849366	1849449	1	-	0	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1849366	1849449	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849450	1849585	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1849586	1849661	1	-	1	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1849586	1849661	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849662	1849743	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1849744	1849940	1	-	0	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1849744	1849940	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1849941	1850077	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1850078	1850147	0.87	-	1	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1850078	1850147	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	intron	1850148	1850265	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	CDS	1850266	1850537	0.66	-	0	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	exon	1850266	1850537	.	-	.	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
Ledus.S4	AUGUSTUS	start_codon	1850535	1850537	.	-	0	transcript_id "Ledus.S4G026000.t3"; gene_id "Ledus.S4G026000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12008.t1 is derived from g5627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8541559	8541861	.	+	.	Ledus.S4G116400
Ledus.S4	AUGUSTUS	transcript	8541559	8541861	.	+	.	transcript_id "Ledus.S4G116400.t1"; gene_id "Ledus.S4G116400"
Ledus.S4	AUGUSTUS	start_codon	8541559	8541561	.	+	0	transcript_id "Ledus.S4G116400.t1"; gene_id "Ledus.S4G116400"
Ledus.S4	AUGUSTUS	CDS	8541559	8541861	0.93	+	0	transcript_id "Ledus.S4G116400.t1"; gene_id "Ledus.S4G116400"
Ledus.S4	AUGUSTUS	exon	8541559	8541861	.	+	.	transcript_id "Ledus.S4G116400.t1"; gene_id "Ledus.S4G116400"
Ledus.S4	AUGUSTUS	stop_codon	8541862	8541864	.	+	0	transcript_id "Ledus.S4G116400.t1"; gene_id "Ledus.S4G116400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg669.t1 is derived from g7530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3995850	3997487	.	+	.	Ledus.S2G055100
Ledus.S2	AUGUSTUS	transcript	3995850	3997487	.	+	.	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	start_codon	3995850	3995852	.	+	0	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	CDS	3995850	3996006	0.66	+	0	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	exon	3995850	3996006	.	+	.	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	intron	3996007	3996074	.	+	.	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	CDS	3996075	3996230	1	+	2	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	exon	3996075	3996230	.	+	.	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	intron	3996231	3996312	.	+	.	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	CDS	3996313	3996471	1	+	2	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	exon	3996313	3996471	.	+	.	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	intron	3996472	3996621	.	+	.	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	CDS	3996622	3996840	1	+	2	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	exon	3996622	3996840	.	+	.	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	intron	3996841	3996916	.	+	.	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	CDS	3996917	3997048	1	+	2	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	exon	3996917	3997048	.	+	.	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	intron	3997049	3997125	.	+	.	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	CDS	3997126	3997487	0.89	+	2	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	exon	3997126	3997487	.	+	.	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
Ledus.S2	AUGUSTUS	stop_codon	3997488	3997490	.	+	0	transcript_id "Ledus.S2G055100.t1"; gene_id "Ledus.S2G055100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg398.t1 is derived from g7259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2224638	2225303	.	+	.	Ledus.S2G028000
Ledus.S2	AUGUSTUS	transcript	2224638	2225303	.	+	.	transcript_id "Ledus.S2G028000.t1"; gene_id "Ledus.S2G028000"
Ledus.S2	AUGUSTUS	start_codon	2224638	2224640	.	+	0	transcript_id "Ledus.S2G028000.t1"; gene_id "Ledus.S2G028000"
Ledus.S2	AUGUSTUS	CDS	2224638	2225303	0.5	+	0	transcript_id "Ledus.S2G028000.t1"; gene_id "Ledus.S2G028000"
Ledus.S2	AUGUSTUS	exon	2224638	2225303	.	+	.	transcript_id "Ledus.S2G028000.t1"; gene_id "Ledus.S2G028000"
Ledus.S2	AUGUSTUS	stop_codon	2225304	2225306	.	+	0	transcript_id "Ledus.S2G028000.t1"; gene_id "Ledus.S2G028000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2670.t1 is derived from g103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1550572	1552723	.	+	.	Ledus.S1G009100
Ledus.S1	AUGUSTUS	transcript	1550572	1552723	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	start_codon	1550572	1550574	.	+	0	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	CDS	1550572	1550795	0.61	+	0	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	exon	1550572	1550795	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	intron	1550796	1550876	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	CDS	1550877	1551201	0.91	+	1	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	exon	1550877	1551201	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	intron	1551202	1551293	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	CDS	1551294	1551449	1	+	0	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	exon	1551294	1551449	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	intron	1551450	1551529	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	CDS	1551530	1551799	1	+	0	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	exon	1551530	1551799	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	intron	1551800	1551886	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	CDS	1551887	1551973	1	+	0	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	exon	1551887	1551973	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	intron	1551974	1552056	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	CDS	1552057	1552135	1	+	0	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	exon	1552057	1552135	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	intron	1552136	1552227	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	CDS	1552228	1552334	1	+	2	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	exon	1552228	1552334	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	intron	1552335	1552422	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	CDS	1552423	1552538	1	+	0	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	exon	1552423	1552538	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	intron	1552539	1552617	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	CDS	1552618	1552723	0.98	+	1	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	exon	1552618	1552723	.	+	.	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
Ledus.S1	AUGUSTUS	stop_codon	1552724	1552726	.	+	0	transcript_id "Ledus.S1G009100.t1"; gene_id "Ledus.S1G009100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1966.t1 is derived from g8829.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13850011	13851060	.	+	.	Ledus.S2G184800
Ledus.S2	AUGUSTUS	transcript	13850011	13851060	.	+	.	transcript_id "Ledus.S2G184800.t1"; gene_id "Ledus.S2G184800"
Ledus.S2	AUGUSTUS	start_codon	13850011	13850013	.	+	0	transcript_id "Ledus.S2G184800.t1"; gene_id "Ledus.S2G184800"
Ledus.S2	AUGUSTUS	CDS	13850011	13851060	0.97	+	0	transcript_id "Ledus.S2G184800.t1"; gene_id "Ledus.S2G184800"
Ledus.S2	AUGUSTUS	exon	13850011	13851060	.	+	.	transcript_id "Ledus.S2G184800.t1"; gene_id "Ledus.S2G184800"
Ledus.S2	AUGUSTUS	stop_codon	13851061	13851063	.	+	0	transcript_id "Ledus.S2G184800.t1"; gene_id "Ledus.S2G184800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6885.t1 is derived from g4329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34941373	34943470	.	+	.	Ledus.S1G430600
Ledus.S1	AUGUSTUS	transcript	34941373	34943470	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	start_codon	34941373	34941375	.	+	0	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	CDS	34941373	34941680	0.85	+	0	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	exon	34941373	34941680	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	intron	34941681	34941757	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	CDS	34941758	34941911	1	+	1	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	exon	34941758	34941911	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	intron	34941912	34941978	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	CDS	34941979	34942140	1	+	0	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	exon	34941979	34942140	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	intron	34942141	34942221	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	CDS	34942222	34942707	1	+	0	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	exon	34942222	34942707	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	intron	34942708	34942791	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	CDS	34942792	34942870	1	+	0	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	exon	34942792	34942870	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	intron	34942871	34942966	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	CDS	34942967	34943073	1	+	2	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	exon	34942967	34943073	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	intron	34943074	34943150	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	CDS	34943151	34943269	1	+	0	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	exon	34943151	34943269	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	intron	34943270	34943361	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	CDS	34943362	34943470	1	+	1	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	exon	34943362	34943470	.	+	.	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
Ledus.S1	AUGUSTUS	stop_codon	34943471	34943473	.	+	0	transcript_id "Ledus.S1G430600.t1"; gene_id "Ledus.S1G430600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5446.t1 is derived from g2885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24353280	24354011	.	-	.	Ledus.S1G286700
Ledus.S1	AUGUSTUS	transcript	24353280	24354011	.	-	.	transcript_id "Ledus.S1G286700.t1"; gene_id "Ledus.S1G286700"
Ledus.S1	AUGUSTUS	stop_codon	24353277	24353279	.	-	0	transcript_id "Ledus.S1G286700.t1"; gene_id "Ledus.S1G286700"
Ledus.S1	AUGUSTUS	CDS	24353280	24354011	0.81	-	0	transcript_id "Ledus.S1G286700.t1"; gene_id "Ledus.S1G286700"
Ledus.S1	AUGUSTUS	exon	24353280	24354011	.	-	.	transcript_id "Ledus.S1G286700.t1"; gene_id "Ledus.S1G286700"
Ledus.S1	AUGUSTUS	start_codon	24354009	24354011	.	-	0	transcript_id "Ledus.S1G286700.t1"; gene_id "Ledus.S1G286700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1015.t1 is derived from g7876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6778928	6779583	.	+	.	Ledus.S2G089700
Ledus.S2	AUGUSTUS	transcript	6778928	6779583	.	+	.	transcript_id "Ledus.S2G089700.t1"; gene_id "Ledus.S2G089700"
Ledus.S2	AUGUSTUS	start_codon	6778928	6778930	.	+	0	transcript_id "Ledus.S2G089700.t1"; gene_id "Ledus.S2G089700"
Ledus.S2	AUGUSTUS	CDS	6778928	6779216	0.83	+	0	transcript_id "Ledus.S2G089700.t1"; gene_id "Ledus.S2G089700"
Ledus.S2	AUGUSTUS	exon	6778928	6779216	.	+	.	transcript_id "Ledus.S2G089700.t1"; gene_id "Ledus.S2G089700"
Ledus.S2	AUGUSTUS	intron	6779217	6779311	.	+	.	transcript_id "Ledus.S2G089700.t1"; gene_id "Ledus.S2G089700"
Ledus.S2	AUGUSTUS	CDS	6779312	6779332	0.82	+	2	transcript_id "Ledus.S2G089700.t1"; gene_id "Ledus.S2G089700"
Ledus.S2	AUGUSTUS	exon	6779312	6779332	.	+	.	transcript_id "Ledus.S2G089700.t1"; gene_id "Ledus.S2G089700"
Ledus.S2	AUGUSTUS	intron	6779333	6779422	.	+	.	transcript_id "Ledus.S2G089700.t1"; gene_id "Ledus.S2G089700"
Ledus.S2	AUGUSTUS	CDS	6779423	6779583	0.98	+	2	transcript_id "Ledus.S2G089700.t1"; gene_id "Ledus.S2G089700"
Ledus.S2	AUGUSTUS	exon	6779423	6779583	.	+	.	transcript_id "Ledus.S2G089700.t1"; gene_id "Ledus.S2G089700"
Ledus.S2	AUGUSTUS	stop_codon	6779584	6779586	.	+	0	transcript_id "Ledus.S2G089700.t1"; gene_id "Ledus.S2G089700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9584.t1 is derived from g10614.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7984925	7986716	.	-	.	Ledus.S3G106100
Ledus.S3	AUGUSTUS	transcript	7984925	7986716	.	-	.	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	stop_codon	7984922	7984924	.	-	0	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	CDS	7984925	7985174	1	-	1	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	exon	7984925	7985174	.	-	.	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	intron	7985175	7985251	.	-	.	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	CDS	7985252	7985619	1	-	0	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	exon	7985252	7985619	.	-	.	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	intron	7985620	7985687	.	-	.	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	CDS	7985688	7985975	0.93	-	0	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	exon	7985688	7985975	.	-	.	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	intron	7985976	7986049	.	-	.	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	CDS	7986050	7986269	0.95	-	1	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	exon	7986050	7986269	.	-	.	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	intron	7986270	7986336	.	-	.	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	CDS	7986337	7986716	0.54	-	0	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	exon	7986337	7986716	.	-	.	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
Ledus.S3	AUGUSTUS	start_codon	7986714	7986716	.	-	0	transcript_id "Ledus.S3G106100.t1"; gene_id "Ledus.S3G106100"
# This transcript jg2359.t2 is derived from g9222.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2360.t1 is derived from g9223.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17476263	17476499	.	-	.	Ledus.S2G224200
Ledus.S2	AUGUSTUS	transcript	17476263	17476499	.	-	.	transcript_id "Ledus.S2G224200.t1"; gene_id "Ledus.S2G224200"
Ledus.S2	AUGUSTUS	stop_codon	17476260	17476262	.	-	0	transcript_id "Ledus.S2G224200.t1"; gene_id "Ledus.S2G224200"
Ledus.S2	AUGUSTUS	CDS	17476263	17476499	0.91	-	0	transcript_id "Ledus.S2G224200.t1"; gene_id "Ledus.S2G224200"
Ledus.S2	AUGUSTUS	exon	17476263	17476499	.	-	.	transcript_id "Ledus.S2G224200.t1"; gene_id "Ledus.S2G224200"
Ledus.S2	AUGUSTUS	start_codon	17476497	17476499	.	-	0	transcript_id "Ledus.S2G224200.t1"; gene_id "Ledus.S2G224200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10213.t1 is derived from g11243.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13619431	13623631	.	-	.	Ledus.S3G169000
Ledus.S3	AUGUSTUS	transcript	13619431	13623631	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	stop_codon	13619428	13619430	.	-	0	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13619431	13619490	1	-	0	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13619431	13619490	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13619491	13619637	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13619638	13619711	1	-	2	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13619638	13619711	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13619712	13620337	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13620338	13620349	1	-	2	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13620338	13620349	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13620350	13620491	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13620492	13621221	1	-	0	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13620492	13621221	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13621222	13621315	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13621316	13621447	1	-	0	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13621316	13621447	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13621448	13621696	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13621697	13622044	0.99	-	0	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13621697	13622044	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13622045	13622151	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13622152	13622466	1	-	0	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13622152	13622466	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13622467	13622587	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13622588	13622712	0.99	-	2	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13622588	13622712	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13622713	13622798	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13622799	13622834	0.99	-	2	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13622799	13622834	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13622835	13622986	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13622987	13623081	0.95	-	1	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13622987	13623081	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13623082	13623170	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13623171	13623251	1	-	1	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13623171	13623251	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13623252	13623518	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13623519	13623631	0.86	-	0	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13623519	13623631	.	-	.	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	start_codon	13623629	13623631	.	-	0	transcript_id "Ledus.S3G169000.t1"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	transcript	13619431	13623631	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	stop_codon	13619428	13619430	.	-	0	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13619431	13619490	1	-	0	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13619431	13619490	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13619491	13619637	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13619638	13619711	1	-	2	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13619638	13619711	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13619712	13620337	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13620338	13620349	1	-	2	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13620338	13620349	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13620350	13620491	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13620492	13621221	0.99	-	0	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13620492	13621221	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13621222	13621315	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13621316	13621447	1	-	0	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13621316	13621447	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13621448	13621696	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13621697	13622044	1	-	0	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13621697	13622044	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13622045	13622151	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13622152	13622466	1	-	0	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13622152	13622466	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13622467	13622587	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13622588	13622712	1	-	2	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13622588	13622712	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13622713	13622798	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13622799	13622837	1	-	2	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13622799	13622837	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13622838	13622986	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13622987	13623081	0.93	-	1	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13622987	13623081	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13623082	13623170	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13623171	13623251	0.97	-	1	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13623171	13623251	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	intron	13623252	13623518	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	CDS	13623519	13623631	0.78	-	0	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	exon	13623519	13623631	.	-	.	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
Ledus.S3	AUGUSTUS	start_codon	13623629	13623631	.	-	0	transcript_id "Ledus.S3G169000.t2"; gene_id "Ledus.S3G169000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11966.t1 is derived from g5585.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8054044	8056325	.	-	.	Ledus.S4G112200
Ledus.S4	AUGUSTUS	transcript	8054044	8056325	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	stop_codon	8054041	8054043	.	-	0	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	CDS	8054044	8054160	1	-	0	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	exon	8054044	8054160	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	intron	8054161	8054259	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	CDS	8054260	8054325	1	-	0	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	exon	8054260	8054325	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	intron	8054326	8054472	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	CDS	8054473	8054568	0.83	-	0	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	exon	8054473	8054568	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	intron	8054569	8054671	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	CDS	8054672	8054761	0.67	-	0	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	exon	8054672	8054761	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	intron	8054762	8054877	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	CDS	8054878	8054967	1	-	0	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	exon	8054878	8054967	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	intron	8054968	8055144	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	CDS	8055145	8055240	1	-	0	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	exon	8055145	8055240	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	intron	8055241	8055327	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	CDS	8055328	8055380	1	-	2	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	exon	8055328	8055380	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	intron	8055381	8055543	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	CDS	8055544	8055569	0.51	-	1	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	exon	8055544	8055569	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	intron	8055570	8055680	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	CDS	8055681	8055850	0.45	-	0	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	exon	8055681	8055850	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	intron	8055851	8055983	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	CDS	8055984	8056325	0.72	-	0	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	exon	8055984	8056325	.	-	.	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
Ledus.S4	AUGUSTUS	start_codon	8056323	8056325	.	-	0	transcript_id "Ledus.S4G112200.t1"; gene_id "Ledus.S4G112200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12429.t1 is derived from g6050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11977344	11977902	.	+	.	Ledus.S4G158500
Ledus.S4	AUGUSTUS	transcript	11977344	11977902	.	+	.	transcript_id "Ledus.S4G158500.t1"; gene_id "Ledus.S4G158500"
Ledus.S4	AUGUSTUS	start_codon	11977344	11977346	.	+	0	transcript_id "Ledus.S4G158500.t1"; gene_id "Ledus.S4G158500"
Ledus.S4	AUGUSTUS	CDS	11977344	11977480	0.84	+	0	transcript_id "Ledus.S4G158500.t1"; gene_id "Ledus.S4G158500"
Ledus.S4	AUGUSTUS	exon	11977344	11977480	.	+	.	transcript_id "Ledus.S4G158500.t1"; gene_id "Ledus.S4G158500"
Ledus.S4	AUGUSTUS	intron	11977481	11977832	.	+	.	transcript_id "Ledus.S4G158500.t1"; gene_id "Ledus.S4G158500"
Ledus.S4	AUGUSTUS	CDS	11977833	11977902	0.33	+	1	transcript_id "Ledus.S4G158500.t1"; gene_id "Ledus.S4G158500"
Ledus.S4	AUGUSTUS	exon	11977833	11977902	.	+	.	transcript_id "Ledus.S4G158500.t1"; gene_id "Ledus.S4G158500"
Ledus.S4	AUGUSTUS	stop_codon	11977903	11977905	.	+	0	transcript_id "Ledus.S4G158500.t1"; gene_id "Ledus.S4G158500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg244.t1 is derived from g7105.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1104157	1106137	.	+	.	Ledus.S2G012600
Ledus.S2	AUGUSTUS	transcript	1104157	1106137	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	start_codon	1104157	1104159	.	+	0	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	CDS	1104157	1104245	1	+	0	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	exon	1104157	1104245	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	intron	1104246	1104404	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	CDS	1104405	1104759	1	+	1	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	exon	1104405	1104759	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	intron	1104760	1104856	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	CDS	1104857	1105030	0.99	+	0	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	exon	1104857	1105030	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	intron	1105031	1105136	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	CDS	1105137	1105451	1	+	0	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	exon	1105137	1105451	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	intron	1105452	1105571	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	CDS	1105572	1105607	1	+	0	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	exon	1105572	1105607	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	intron	1105608	1105779	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	CDS	1105780	1105869	1	+	0	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	exon	1105780	1105869	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	intron	1105870	1105945	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	CDS	1105946	1106137	1	+	0	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	exon	1105946	1106137	.	+	.	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
Ledus.S2	AUGUSTUS	stop_codon	1106138	1106140	.	+	0	transcript_id "Ledus.S2G012600.t1"; gene_id "Ledus.S2G012600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11232.t1 is derived from g4850.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2842991	2844941	.	+	.	Ledus.S4G038800
Ledus.S4	AUGUSTUS	transcript	2842991	2844941	.	+	.	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	start_codon	2842991	2842993	.	+	0	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	CDS	2842991	2843268	0.99	+	0	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	exon	2842991	2843268	.	+	.	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	intron	2843269	2843341	.	+	.	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	CDS	2843342	2844296	1	+	1	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	exon	2843342	2844296	.	+	.	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	intron	2844297	2844394	.	+	.	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	CDS	2844395	2844445	1	+	0	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	exon	2844395	2844445	.	+	.	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	intron	2844446	2844545	.	+	.	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	CDS	2844546	2844941	0.87	+	0	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	exon	2844546	2844941	.	+	.	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
Ledus.S4	AUGUSTUS	stop_codon	2844942	2844944	.	+	0	transcript_id "Ledus.S4G038800.t1"; gene_id "Ledus.S4G038800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12908.t1 is derived from g4400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	292725	293824	.	+	.	Ledus.C9G001600
Ledus.C9	AUGUSTUS	transcript	292725	293824	.	+	.	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	start_codon	292725	292727	.	+	0	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	CDS	292725	292861	0.89	+	0	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	exon	292725	292861	.	+	.	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	intron	292862	292944	.	+	.	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	CDS	292945	293033	1	+	1	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	exon	292945	293033	.	+	.	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	intron	293034	293131	.	+	.	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	CDS	293132	293230	1	+	2	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	exon	293132	293230	.	+	.	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	intron	293231	293374	.	+	.	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	CDS	293375	293442	0.54	+	2	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	exon	293375	293442	.	+	.	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	intron	293443	293611	.	+	.	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	CDS	293612	293824	0.5	+	0	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	exon	293612	293824	.	+	.	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
Ledus.C9	AUGUSTUS	stop_codon	293825	293827	.	+	0	transcript_id "Ledus.C9G001600.t1"; gene_id "Ledus.C9G001600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12267.t1 is derived from g5887.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10707276	10708769	.	-	.	Ledus.S4G142300
Ledus.S4	AUGUSTUS	transcript	10707276	10708769	.	-	.	transcript_id "Ledus.S4G142300.t1"; gene_id "Ledus.S4G142300"
Ledus.S4	AUGUSTUS	stop_codon	10707273	10707275	.	-	0	transcript_id "Ledus.S4G142300.t1"; gene_id "Ledus.S4G142300"
Ledus.S4	AUGUSTUS	CDS	10707276	10708217	0.95	-	0	transcript_id "Ledus.S4G142300.t1"; gene_id "Ledus.S4G142300"
Ledus.S4	AUGUSTUS	exon	10707276	10708217	.	-	.	transcript_id "Ledus.S4G142300.t1"; gene_id "Ledus.S4G142300"
Ledus.S4	AUGUSTUS	intron	10708218	10708307	.	-	.	transcript_id "Ledus.S4G142300.t1"; gene_id "Ledus.S4G142300"
Ledus.S4	AUGUSTUS	CDS	10708308	10708769	0.81	-	0	transcript_id "Ledus.S4G142300.t1"; gene_id "Ledus.S4G142300"
Ledus.S4	AUGUSTUS	exon	10708308	10708769	.	-	.	transcript_id "Ledus.S4G142300.t1"; gene_id "Ledus.S4G142300"
Ledus.S4	AUGUSTUS	start_codon	10708767	10708769	.	-	0	transcript_id "Ledus.S4G142300.t1"; gene_id "Ledus.S4G142300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11445.t1 is derived from g5063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4366913	4369857	.	-	.	Ledus.S4G060100
Ledus.S4	AUGUSTUS	transcript	4366913	4369857	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	stop_codon	4366910	4366912	.	-	0	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	CDS	4366913	4367005	0.4	-	0	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	exon	4366913	4367005	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	intron	4367006	4367504	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	CDS	4367505	4367783	0.18	-	0	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	exon	4367505	4367783	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	intron	4367784	4368466	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	CDS	4368467	4368510	0.98	-	2	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	exon	4368467	4368510	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	intron	4368511	4368607	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	CDS	4368608	4368657	1	-	1	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	exon	4368608	4368657	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	intron	4368658	4368750	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	CDS	4368751	4368788	1	-	0	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	exon	4368751	4368788	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	intron	4368789	4369096	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	CDS	4369097	4369282	1	-	0	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	exon	4369097	4369282	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	intron	4369283	4369438	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	CDS	4369439	4369507	1	-	0	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	exon	4369439	4369507	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	intron	4369508	4369596	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	CDS	4369597	4369857	0.45	-	0	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	exon	4369597	4369857	.	-	.	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
Ledus.S4	AUGUSTUS	start_codon	4369855	4369857	.	-	0	transcript_id "Ledus.S4G060100.t1"; gene_id "Ledus.S4G060100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12354.t1 is derived from g5975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11376880	11378712	.	-	.	Ledus.S4G151000
Ledus.S4	AUGUSTUS	transcript	11376880	11378712	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	stop_codon	11376877	11376879	.	-	0	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	CDS	11376880	11376927	0.9	-	0	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	exon	11376880	11376927	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	intron	11376928	11377011	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	CDS	11377012	11377072	1	-	1	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	exon	11377012	11377072	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	intron	11377073	11377154	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	CDS	11377155	11377403	1	-	1	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	exon	11377155	11377403	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	intron	11377404	11377477	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	CDS	11377478	11377658	1	-	2	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	exon	11377478	11377658	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	intron	11377659	11377742	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	CDS	11377743	11378038	1	-	1	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	exon	11377743	11378038	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	intron	11378039	11378137	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	CDS	11378138	11378275	1	-	1	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	exon	11378138	11378275	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	intron	11378276	11378357	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	CDS	11378358	11378512	1	-	0	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	exon	11378358	11378512	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	intron	11378513	11378595	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	CDS	11378596	11378712	0.93	-	0	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	exon	11378596	11378712	.	-	.	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
Ledus.S4	AUGUSTUS	start_codon	11378710	11378712	.	-	0	transcript_id "Ledus.S4G151000.t1"; gene_id "Ledus.S4G151000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12838.t1 is derived from g11872.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C11	AUGUSTUS	gene	40482	40718	.	+	.	Ledus.C11G000200
Ledus.C11	AUGUSTUS	transcript	40482	40718	.	+	.	transcript_id "Ledus.C11G000200.t1"; gene_id "Ledus.C11G000200"
Ledus.C11	AUGUSTUS	start_codon	40482	40484	.	+	0	transcript_id "Ledus.C11G000200.t1"; gene_id "Ledus.C11G000200"
Ledus.C11	AUGUSTUS	CDS	40482	40718	0.86	+	0	transcript_id "Ledus.C11G000200.t1"; gene_id "Ledus.C11G000200"
Ledus.C11	AUGUSTUS	exon	40482	40718	.	+	.	transcript_id "Ledus.C11G000200.t1"; gene_id "Ledus.C11G000200"
Ledus.C11	AUGUSTUS	stop_codon	40719	40721	.	+	0	transcript_id "Ledus.C11G000200.t1"; gene_id "Ledus.C11G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8703.t1 is derived from g9733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1485537	1488458	.	-	.	Ledus.S3G018000
Ledus.S3	AUGUSTUS	transcript	1485537	1488458	.	-	.	transcript_id "Ledus.S3G018000.t1"; gene_id "Ledus.S3G018000"
Ledus.S3	AUGUSTUS	stop_codon	1485534	1485536	.	-	0	transcript_id "Ledus.S3G018000.t1"; gene_id "Ledus.S3G018000"
Ledus.S3	AUGUSTUS	CDS	1485537	1486543	0.94	-	2	transcript_id "Ledus.S3G018000.t1"; gene_id "Ledus.S3G018000"
Ledus.S3	AUGUSTUS	exon	1485537	1486543	.	-	.	transcript_id "Ledus.S3G018000.t1"; gene_id "Ledus.S3G018000"
Ledus.S3	AUGUSTUS	intron	1486544	1486642	.	-	.	transcript_id "Ledus.S3G018000.t1"; gene_id "Ledus.S3G018000"
Ledus.S3	AUGUSTUS	CDS	1486643	1487239	1	-	2	transcript_id "Ledus.S3G018000.t1"; gene_id "Ledus.S3G018000"
Ledus.S3	AUGUSTUS	exon	1486643	1487239	.	-	.	transcript_id "Ledus.S3G018000.t1"; gene_id "Ledus.S3G018000"
Ledus.S3	AUGUSTUS	intron	1487240	1487377	.	-	.	transcript_id "Ledus.S3G018000.t1"; gene_id "Ledus.S3G018000"
Ledus.S3	AUGUSTUS	CDS	1487378	1488458	0.84	-	0	transcript_id "Ledus.S3G018000.t1"; gene_id "Ledus.S3G018000"
Ledus.S3	AUGUSTUS	exon	1487378	1488458	.	-	.	transcript_id "Ledus.S3G018000.t1"; gene_id "Ledus.S3G018000"
Ledus.S3	AUGUSTUS	start_codon	1488456	1488458	.	-	0	transcript_id "Ledus.S3G018000.t1"; gene_id "Ledus.S3G018000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9601.t1 is derived from g10631.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8287989	8289515	.	+	.	Ledus.S3G107800
Ledus.S3	AUGUSTUS	transcript	8287989	8289515	.	+	.	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	start_codon	8287989	8287991	.	+	0	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	CDS	8287989	8288180	1	+	0	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	exon	8287989	8288180	.	+	.	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	intron	8288181	8288279	.	+	.	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	CDS	8288280	8288426	1	+	0	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	exon	8288280	8288426	.	+	.	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	intron	8288427	8288617	.	+	.	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	CDS	8288618	8288864	0.99	+	0	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	exon	8288618	8288864	.	+	.	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	intron	8288865	8288951	.	+	.	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	CDS	8288952	8289155	1	+	2	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	exon	8288952	8289155	.	+	.	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	intron	8289156	8289249	.	+	.	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	CDS	8289250	8289515	1	+	2	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	exon	8289250	8289515	.	+	.	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	stop_codon	8289516	8289518	.	+	0	transcript_id "Ledus.S3G107800.t1"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	transcript	8287989	8288249	.	+	.	transcript_id "Ledus.S3G107800.t2"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	start_codon	8287989	8287991	.	+	0	transcript_id "Ledus.S3G107800.t2"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	CDS	8287989	8288249	0.84	+	0	transcript_id "Ledus.S3G107800.t2"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	exon	8287989	8288249	.	+	.	transcript_id "Ledus.S3G107800.t2"; gene_id "Ledus.S3G107800"
Ledus.S3	AUGUSTUS	stop_codon	8288250	8288252	.	+	0	transcript_id "Ledus.S3G107800.t2"; gene_id "Ledus.S3G107800"
# This transcript jg5384.t2 is derived from g2823.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg5385.t1 is derived from g2824.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23963299	23964726	.	+	.	Ledus.S1G280600
Ledus.S1	AUGUSTUS	transcript	23963299	23964322	.	+	.	transcript_id "Ledus.S1G280600.t1"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	start_codon	23963299	23963301	.	+	0	transcript_id "Ledus.S1G280600.t1"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	CDS	23963299	23964183	0.61	+	0	transcript_id "Ledus.S1G280600.t1"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	exon	23963299	23964183	.	+	.	transcript_id "Ledus.S1G280600.t1"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	intron	23964184	23964271	.	+	.	transcript_id "Ledus.S1G280600.t1"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	CDS	23964272	23964322	0.83	+	0	transcript_id "Ledus.S1G280600.t1"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	exon	23964272	23964322	.	+	.	transcript_id "Ledus.S1G280600.t1"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	stop_codon	23964323	23964325	.	+	0	transcript_id "Ledus.S1G280600.t1"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	transcript	23963299	23964475	.	+	.	transcript_id "Ledus.S1G280600.t2"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	start_codon	23963299	23963301	.	+	0	transcript_id "Ledus.S1G280600.t2"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	CDS	23963299	23964352	0.36	+	0	transcript_id "Ledus.S1G280600.t2"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	exon	23963299	23964352	.	+	.	transcript_id "Ledus.S1G280600.t2"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	intron	23964353	23964449	.	+	.	transcript_id "Ledus.S1G280600.t2"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	CDS	23964450	23964475	0.58	+	2	transcript_id "Ledus.S1G280600.t2"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	exon	23964450	23964475	.	+	.	transcript_id "Ledus.S1G280600.t2"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	stop_codon	23964476	23964478	.	+	0	transcript_id "Ledus.S1G280600.t2"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	transcript	23963299	23964726	.	+	.	transcript_id "Ledus.S1G280600.t3"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	start_codon	23963299	23963301	.	+	0	transcript_id "Ledus.S1G280600.t3"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	CDS	23963299	23964726	0.87	+	0	transcript_id "Ledus.S1G280600.t3"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	exon	23963299	23964726	.	+	.	transcript_id "Ledus.S1G280600.t3"; gene_id "Ledus.S1G280600"
Ledus.S1	AUGUSTUS	stop_codon	23964727	23964729	.	+	0	transcript_id "Ledus.S1G280600.t3"; gene_id "Ledus.S1G280600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2145.t1 is derived from g9008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15260985	15263062	.	+	.	Ledus.S2G202700
Ledus.S2	AUGUSTUS	transcript	15260985	15263062	.	+	.	transcript_id "Ledus.S2G202700.t1"; gene_id "Ledus.S2G202700"
Ledus.S2	AUGUSTUS	start_codon	15260985	15260987	.	+	0	transcript_id "Ledus.S2G202700.t1"; gene_id "Ledus.S2G202700"
Ledus.S2	AUGUSTUS	CDS	15260985	15261990	0.52	+	0	transcript_id "Ledus.S2G202700.t1"; gene_id "Ledus.S2G202700"
Ledus.S2	AUGUSTUS	exon	15260985	15261990	.	+	.	transcript_id "Ledus.S2G202700.t1"; gene_id "Ledus.S2G202700"
Ledus.S2	AUGUSTUS	intron	15261991	15262835	.	+	.	transcript_id "Ledus.S2G202700.t1"; gene_id "Ledus.S2G202700"
Ledus.S2	AUGUSTUS	CDS	15262836	15263062	0.29	+	2	transcript_id "Ledus.S2G202700.t1"; gene_id "Ledus.S2G202700"
Ledus.S2	AUGUSTUS	exon	15262836	15263062	.	+	.	transcript_id "Ledus.S2G202700.t1"; gene_id "Ledus.S2G202700"
Ledus.S2	AUGUSTUS	stop_codon	15263063	15263065	.	+	0	transcript_id "Ledus.S2G202700.t1"; gene_id "Ledus.S2G202700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10997.t1 is derived from g4615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1051357	1052448	.	+	.	Ledus.S4G015300
Ledus.S4	AUGUSTUS	transcript	1051357	1052448	.	+	.	transcript_id "Ledus.S4G015300.t1"; gene_id "Ledus.S4G015300"
Ledus.S4	AUGUSTUS	start_codon	1051357	1051359	.	+	0	transcript_id "Ledus.S4G015300.t1"; gene_id "Ledus.S4G015300"
Ledus.S4	AUGUSTUS	CDS	1051357	1052448	0.94	+	0	transcript_id "Ledus.S4G015300.t1"; gene_id "Ledus.S4G015300"
Ledus.S4	AUGUSTUS	exon	1051357	1052448	.	+	.	transcript_id "Ledus.S4G015300.t1"; gene_id "Ledus.S4G015300"
Ledus.S4	AUGUSTUS	stop_codon	1052449	1052451	.	+	0	transcript_id "Ledus.S4G015300.t1"; gene_id "Ledus.S4G015300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6840.t1 is derived from g4284.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34577451	34579642	.	-	.	Ledus.S1G426100
Ledus.S1	AUGUSTUS	transcript	34577451	34579642	.	-	.	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	stop_codon	34577448	34577450	.	-	0	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	CDS	34577451	34577561	1	-	0	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	exon	34577451	34577561	.	-	.	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	intron	34577562	34577643	.	-	.	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	CDS	34577644	34577765	1	-	2	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	exon	34577644	34577765	.	-	.	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	intron	34577766	34577854	.	-	.	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	CDS	34577855	34578036	1	-	1	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	exon	34577855	34578036	.	-	.	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	intron	34578037	34579520	.	-	.	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	CDS	34579521	34579642	0.94	-	0	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	exon	34579521	34579642	.	-	.	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
Ledus.S1	AUGUSTUS	start_codon	34579640	34579642	.	-	0	transcript_id "Ledus.S1G426100.t1"; gene_id "Ledus.S1G426100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11273.t1 is derived from g4891.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3127413	3128772	.	+	.	Ledus.S4G042900
Ledus.S4	AUGUSTUS	transcript	3127413	3128772	.	+	.	transcript_id "Ledus.S4G042900.t1"; gene_id "Ledus.S4G042900"
Ledus.S4	AUGUSTUS	start_codon	3127413	3127415	.	+	0	transcript_id "Ledus.S4G042900.t1"; gene_id "Ledus.S4G042900"
Ledus.S4	AUGUSTUS	CDS	3127413	3128072	0.68	+	0	transcript_id "Ledus.S4G042900.t1"; gene_id "Ledus.S4G042900"
Ledus.S4	AUGUSTUS	exon	3127413	3128072	.	+	.	transcript_id "Ledus.S4G042900.t1"; gene_id "Ledus.S4G042900"
Ledus.S4	AUGUSTUS	intron	3128073	3128139	.	+	.	transcript_id "Ledus.S4G042900.t1"; gene_id "Ledus.S4G042900"
Ledus.S4	AUGUSTUS	CDS	3128140	3128772	1	+	0	transcript_id "Ledus.S4G042900.t1"; gene_id "Ledus.S4G042900"
Ledus.S4	AUGUSTUS	exon	3128140	3128772	.	+	.	transcript_id "Ledus.S4G042900.t1"; gene_id "Ledus.S4G042900"
Ledus.S4	AUGUSTUS	stop_codon	3128773	3128775	.	+	0	transcript_id "Ledus.S4G042900.t1"; gene_id "Ledus.S4G042900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1815.t1 is derived from g8678.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12726017	12726325	.	-	.	Ledus.S2G169700
Ledus.S2	AUGUSTUS	transcript	12726017	12726325	.	-	.	transcript_id "Ledus.S2G169700.t1"; gene_id "Ledus.S2G169700"
Ledus.S2	AUGUSTUS	stop_codon	12726014	12726016	.	-	0	transcript_id "Ledus.S2G169700.t1"; gene_id "Ledus.S2G169700"
Ledus.S2	AUGUSTUS	CDS	12726017	12726325	0.46	-	0	transcript_id "Ledus.S2G169700.t1"; gene_id "Ledus.S2G169700"
Ledus.S2	AUGUSTUS	exon	12726017	12726325	.	-	.	transcript_id "Ledus.S2G169700.t1"; gene_id "Ledus.S2G169700"
Ledus.S2	AUGUSTUS	start_codon	12726323	12726325	.	-	0	transcript_id "Ledus.S2G169700.t1"; gene_id "Ledus.S2G169700"
# This transcript jg10746.t2 is derived from g11777.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10747.t1 is derived from g11778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17463272	17463748	.	+	.	Ledus.S3G222400
Ledus.S3	AUGUSTUS	transcript	17463272	17463748	.	+	.	transcript_id "Ledus.S3G222400.t1"; gene_id "Ledus.S3G222400"
Ledus.S3	AUGUSTUS	start_codon	17463272	17463274	.	+	0	transcript_id "Ledus.S3G222400.t1"; gene_id "Ledus.S3G222400"
Ledus.S3	AUGUSTUS	CDS	17463272	17463748	0.91	+	0	transcript_id "Ledus.S3G222400.t1"; gene_id "Ledus.S3G222400"
Ledus.S3	AUGUSTUS	exon	17463272	17463748	.	+	.	transcript_id "Ledus.S3G222400.t1"; gene_id "Ledus.S3G222400"
Ledus.S3	AUGUSTUS	stop_codon	17463749	17463751	.	+	0	transcript_id "Ledus.S3G222400.t1"; gene_id "Ledus.S3G222400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5120.t1 is derived from g2559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21811898	21813666	.	+	.	Ledus.S1G254100
Ledus.S1	AUGUSTUS	transcript	21811898	21813666	.	+	.	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	start_codon	21811898	21811900	.	+	0	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	CDS	21811898	21812008	0.33	+	0	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	exon	21811898	21812008	.	+	.	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	intron	21812009	21812085	.	+	.	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	CDS	21812086	21812331	0.26	+	0	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	exon	21812086	21812331	.	+	.	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	intron	21812332	21812571	.	+	.	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	CDS	21812572	21812723	0.62	+	0	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	exon	21812572	21812723	.	+	.	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	intron	21812724	21812939	.	+	.	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	CDS	21812940	21812994	0.88	+	1	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	exon	21812940	21812994	.	+	.	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	intron	21812995	21813155	.	+	.	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	CDS	21813156	21813228	0.91	+	0	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	exon	21813156	21813228	.	+	.	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	intron	21813229	21813403	.	+	.	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	CDS	21813404	21813666	0.65	+	2	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	exon	21813404	21813666	.	+	.	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
Ledus.S1	AUGUSTUS	stop_codon	21813667	21813669	.	+	0	transcript_id "Ledus.S1G254100.t1"; gene_id "Ledus.S1G254100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6727.t1 is derived from g4170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33544167	33545589	.	-	.	Ledus.S1G414800
Ledus.S1	AUGUSTUS	transcript	33544167	33545589	.	-	.	transcript_id "Ledus.S1G414800.t1"; gene_id "Ledus.S1G414800"
Ledus.S1	AUGUSTUS	stop_codon	33544164	33544166	.	-	0	transcript_id "Ledus.S1G414800.t1"; gene_id "Ledus.S1G414800"
Ledus.S1	AUGUSTUS	CDS	33544167	33544265	0.98	-	0	transcript_id "Ledus.S1G414800.t1"; gene_id "Ledus.S1G414800"
Ledus.S1	AUGUSTUS	exon	33544167	33544265	.	-	.	transcript_id "Ledus.S1G414800.t1"; gene_id "Ledus.S1G414800"
Ledus.S1	AUGUSTUS	intron	33544266	33544367	.	-	.	transcript_id "Ledus.S1G414800.t1"; gene_id "Ledus.S1G414800"
Ledus.S1	AUGUSTUS	CDS	33544368	33544802	0.97	-	0	transcript_id "Ledus.S1G414800.t1"; gene_id "Ledus.S1G414800"
Ledus.S1	AUGUSTUS	exon	33544368	33544802	.	-	.	transcript_id "Ledus.S1G414800.t1"; gene_id "Ledus.S1G414800"
Ledus.S1	AUGUSTUS	intron	33544803	33544887	.	-	.	transcript_id "Ledus.S1G414800.t1"; gene_id "Ledus.S1G414800"
Ledus.S1	AUGUSTUS	CDS	33544888	33545589	0.8	-	0	transcript_id "Ledus.S1G414800.t1"; gene_id "Ledus.S1G414800"
Ledus.S1	AUGUSTUS	exon	33544888	33545589	.	-	.	transcript_id "Ledus.S1G414800.t1"; gene_id "Ledus.S1G414800"
Ledus.S1	AUGUSTUS	start_codon	33545587	33545589	.	-	0	transcript_id "Ledus.S1G414800.t1"; gene_id "Ledus.S1G414800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1029.t1 is derived from g7890.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6858557	6858766	.	-	.	Ledus.S2G091100
Ledus.S2	AUGUSTUS	transcript	6858557	6858766	.	-	.	transcript_id "Ledus.S2G091100.t1"; gene_id "Ledus.S2G091100"
Ledus.S2	AUGUSTUS	stop_codon	6858554	6858556	.	-	0	transcript_id "Ledus.S2G091100.t1"; gene_id "Ledus.S2G091100"
Ledus.S2	AUGUSTUS	CDS	6858557	6858766	0.82	-	0	transcript_id "Ledus.S2G091100.t1"; gene_id "Ledus.S2G091100"
Ledus.S2	AUGUSTUS	exon	6858557	6858766	.	-	.	transcript_id "Ledus.S2G091100.t1"; gene_id "Ledus.S2G091100"
Ledus.S2	AUGUSTUS	start_codon	6858764	6858766	.	-	0	transcript_id "Ledus.S2G091100.t1"; gene_id "Ledus.S2G091100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11125.t1 is derived from g4743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2081181	2082032	.	+	.	Ledus.S4G028100
Ledus.S4	AUGUSTUS	transcript	2081181	2082032	.	+	.	transcript_id "Ledus.S4G028100.t1"; gene_id "Ledus.S4G028100"
Ledus.S4	AUGUSTUS	start_codon	2081181	2081183	.	+	0	transcript_id "Ledus.S4G028100.t1"; gene_id "Ledus.S4G028100"
Ledus.S4	AUGUSTUS	CDS	2081181	2082032	0.84	+	0	transcript_id "Ledus.S4G028100.t1"; gene_id "Ledus.S4G028100"
Ledus.S4	AUGUSTUS	exon	2081181	2082032	.	+	.	transcript_id "Ledus.S4G028100.t1"; gene_id "Ledus.S4G028100"
Ledus.S4	AUGUSTUS	stop_codon	2082033	2082035	.	+	0	transcript_id "Ledus.S4G028100.t1"; gene_id "Ledus.S4G028100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10610.t1 is derived from g11640.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16444700	16446849	.	-	.	Ledus.S3G208700
Ledus.S3	AUGUSTUS	transcript	16444700	16446849	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	stop_codon	16444697	16444699	.	-	0	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	CDS	16444700	16444863	0.96	-	2	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	exon	16444700	16444863	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	intron	16444864	16444953	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	CDS	16444954	16445047	1	-	0	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	exon	16444954	16445047	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	intron	16445048	16445139	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	CDS	16445140	16445295	1	-	0	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	exon	16445140	16445295	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	intron	16445296	16445376	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	CDS	16445377	16445436	1	-	0	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	exon	16445377	16445436	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	intron	16445437	16445525	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	CDS	16445526	16445744	0.99	-	0	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	exon	16445526	16445744	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	intron	16445745	16445868	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	CDS	16445869	16446208	1	-	1	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	exon	16445869	16446208	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	intron	16446209	16446316	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	CDS	16446317	16446483	0.98	-	0	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	exon	16446317	16446483	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	intron	16446484	16446591	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	CDS	16446592	16446849	0.69	-	0	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	exon	16446592	16446849	.	-	.	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
Ledus.S3	AUGUSTUS	start_codon	16446847	16446849	.	-	0	transcript_id "Ledus.S3G208700.t1"; gene_id "Ledus.S3G208700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8303.t1 is derived from g12975.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10605935	10608560	.	-	.	Ledus.S5G108100
Ledus.S5	AUGUSTUS	transcript	10605935	10608560	.	-	.	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	stop_codon	10605932	10605934	.	-	0	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	CDS	10605935	10606543	1	-	0	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	exon	10605935	10606543	.	-	.	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	intron	10606544	10606615	.	-	.	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	CDS	10606616	10607118	0.99	-	2	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	exon	10606616	10607118	.	-	.	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	intron	10607119	10607742	.	-	.	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	CDS	10607743	10607896	0.8	-	0	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	exon	10607743	10607896	.	-	.	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	intron	10607897	10608329	.	-	.	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	CDS	10608330	10608560	0.86	-	0	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	exon	10608330	10608560	.	-	.	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
Ledus.S5	AUGUSTUS	start_codon	10608558	10608560	.	-	0	transcript_id "Ledus.S5G108100.t1"; gene_id "Ledus.S5G108100"
# This transcript jg2890.t2 is derived from g325.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2890.t3 is derived from g325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2890.t4 is derived from g325.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2891.t1 is derived from g326.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4418891	4421383	.	-	.	Ledus.S1G031200
Ledus.S1	AUGUSTUS	transcript	4418891	4421383	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	stop_codon	4418888	4418890	.	-	0	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	CDS	4418891	4419262	0.94	-	0	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	exon	4418891	4419262	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	intron	4419263	4419377	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	CDS	4419378	4419546	1	-	1	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	exon	4419378	4419546	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	intron	4419547	4419684	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	CDS	4419685	4419935	1	-	0	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	exon	4419685	4419935	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	intron	4419936	4420097	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	CDS	4420098	4420440	1	-	1	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	exon	4420098	4420440	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	intron	4420441	4420571	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	CDS	4420572	4420580	0.93	-	1	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	exon	4420572	4420580	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	intron	4420581	4421116	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	CDS	4421117	4421173	0.5	-	1	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	exon	4421117	4421173	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	intron	4421174	4421255	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	CDS	4421256	4421383	0.5	-	0	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	exon	4421256	4421383	.	-	.	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
Ledus.S1	AUGUSTUS	start_codon	4421381	4421383	.	-	0	transcript_id "Ledus.S1G031200.t1"; gene_id "Ledus.S1G031200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10720.t1 is derived from g11750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17355598	17362364	.	-	.	Ledus.S3G219700
Ledus.S3	AUGUSTUS	transcript	17355598	17362364	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	stop_codon	17355595	17355597	.	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17355598	17355798	1	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17355598	17355798	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17355799	17355897	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17355898	17356005	1	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17355898	17356005	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17356006	17356095	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17356096	17356269	1	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17356096	17356269	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17356270	17356385	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17356386	17356514	0.98	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17356386	17356514	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17356515	17356604	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17356605	17356898	1	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17356605	17356898	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17356899	17357052	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17357053	17357285	1	-	2	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17357053	17357285	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17357286	17357367	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17357368	17358277	0.79	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17357368	17358277	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17358278	17358384	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17358385	17358449	0.96	-	2	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17358385	17358449	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17358450	17358654	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17358655	17358753	0.96	-	2	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17358655	17358753	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17358754	17358909	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17358910	17359140	0.82	-	2	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17358910	17359140	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17359141	17359284	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17359285	17359319	0.84	-	1	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17359285	17359319	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17359320	17359498	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17359499	17359704	0.95	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17359499	17359704	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17359705	17359808	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17359809	17359925	1	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17359809	17359925	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17359926	17360017	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17360018	17360306	1	-	1	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17360018	17360306	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17360307	17360421	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17360422	17360678	1	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17360422	17360678	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17360679	17360772	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17360773	17361143	1	-	2	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17360773	17361143	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17361144	17361231	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17361232	17361307	1	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17361232	17361307	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17361308	17361494	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17361495	17361584	1	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17361495	17361584	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17361585	17361689	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17361690	17361781	1	-	2	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17361690	17361781	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17361782	17361888	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17361889	17361992	1	-	1	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17361889	17361992	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17361993	17362069	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17362070	17362132	1	-	1	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17362070	17362132	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	intron	17362133	17362236	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	CDS	17362237	17362364	0.99	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	exon	17362237	17362364	.	-	.	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
Ledus.S3	AUGUSTUS	start_codon	17362362	17362364	.	-	0	transcript_id "Ledus.S3G219700.t1"; gene_id "Ledus.S3G219700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1205.t1 is derived from g8066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8592261	8594602	.	-	.	Ledus.S2G108700
Ledus.S2	AUGUSTUS	transcript	8592261	8594602	.	-	.	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	stop_codon	8592258	8592260	.	-	0	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	CDS	8592261	8592273	0.64	-	1	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	exon	8592261	8592273	.	-	.	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	intron	8592274	8592395	.	-	.	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	CDS	8592396	8594179	0.73	-	0	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	exon	8592396	8594179	.	-	.	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	intron	8594180	8594280	.	-	.	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	CDS	8594281	8594419	0.91	-	1	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	exon	8594281	8594419	.	-	.	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	intron	8594420	8594519	.	-	.	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	CDS	8594520	8594602	0.91	-	0	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	exon	8594520	8594602	.	-	.	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
Ledus.S2	AUGUSTUS	start_codon	8594600	8594602	.	-	0	transcript_id "Ledus.S2G108700.t1"; gene_id "Ledus.S2G108700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12832.t1 is derived from g9533.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C16	AUGUSTUS	gene	49348	50655	.	-	.	Ledus.C16G000300
Ledus.C16	AUGUSTUS	transcript	49348	50655	.	-	.	transcript_id "Ledus.C16G000300.t1"; gene_id "Ledus.C16G000300"
Ledus.C16	AUGUSTUS	stop_codon	49345	49347	.	-	0	transcript_id "Ledus.C16G000300.t1"; gene_id "Ledus.C16G000300"
Ledus.C16	AUGUSTUS	CDS	49348	50143	0.32	-	1	transcript_id "Ledus.C16G000300.t1"; gene_id "Ledus.C16G000300"
Ledus.C16	AUGUSTUS	exon	49348	50143	.	-	.	transcript_id "Ledus.C16G000300.t1"; gene_id "Ledus.C16G000300"
Ledus.C16	AUGUSTUS	intron	50144	50296	.	-	.	transcript_id "Ledus.C16G000300.t1"; gene_id "Ledus.C16G000300"
Ledus.C16	AUGUSTUS	CDS	50297	50655	0.48	-	0	transcript_id "Ledus.C16G000300.t1"; gene_id "Ledus.C16G000300"
Ledus.C16	AUGUSTUS	exon	50297	50655	.	-	.	transcript_id "Ledus.C16G000300.t1"; gene_id "Ledus.C16G000300"
Ledus.C16	AUGUSTUS	start_codon	50653	50655	.	-	0	transcript_id "Ledus.C16G000300.t1"; gene_id "Ledus.C16G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1195.t1 is derived from g8056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8458412	8460809	.	-	.	Ledus.S2G107700
Ledus.S2	AUGUSTUS	transcript	8458412	8460809	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	stop_codon	8458409	8458411	.	-	0	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	CDS	8458412	8458513	0.86	-	0	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	exon	8458412	8458513	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	intron	8458514	8458618	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	CDS	8458619	8458702	0.85	-	0	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	exon	8458619	8458702	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	intron	8458703	8458886	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	CDS	8458887	8458959	1	-	1	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	exon	8458887	8458959	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	intron	8458960	8459041	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	CDS	8459042	8459104	1	-	1	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	exon	8459042	8459104	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	intron	8459105	8459191	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	CDS	8459192	8459266	1	-	1	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	exon	8459192	8459266	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	intron	8459267	8459447	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	CDS	8459448	8459513	1	-	1	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	exon	8459448	8459513	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	intron	8459514	8459613	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	CDS	8459614	8459678	1	-	0	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	exon	8459614	8459678	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	intron	8459679	8459832	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	CDS	8459833	8460051	0.88	-	0	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	exon	8459833	8460051	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	intron	8460052	8460175	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	CDS	8460176	8460318	1	-	2	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	exon	8460176	8460318	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	intron	8460319	8460463	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	CDS	8460464	8460809	0.48	-	0	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	exon	8460464	8460809	.	-	.	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
Ledus.S2	AUGUSTUS	start_codon	8460807	8460809	.	-	0	transcript_id "Ledus.S2G107700.t1"; gene_id "Ledus.S2G107700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11963.t1 is derived from g5582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8039919	8040424	.	-	.	Ledus.S4G111900
Ledus.S4	AUGUSTUS	transcript	8039919	8040424	.	-	.	transcript_id "Ledus.S4G111900.t1"; gene_id "Ledus.S4G111900"
Ledus.S4	AUGUSTUS	stop_codon	8039916	8039918	.	-	0	transcript_id "Ledus.S4G111900.t1"; gene_id "Ledus.S4G111900"
Ledus.S4	AUGUSTUS	CDS	8039919	8039938	0.59	-	2	transcript_id "Ledus.S4G111900.t1"; gene_id "Ledus.S4G111900"
Ledus.S4	AUGUSTUS	exon	8039919	8039938	.	-	.	transcript_id "Ledus.S4G111900.t1"; gene_id "Ledus.S4G111900"
Ledus.S4	AUGUSTUS	intron	8039939	8040021	.	-	.	transcript_id "Ledus.S4G111900.t1"; gene_id "Ledus.S4G111900"
Ledus.S4	AUGUSTUS	CDS	8040022	8040424	0.29	-	0	transcript_id "Ledus.S4G111900.t1"; gene_id "Ledus.S4G111900"
Ledus.S4	AUGUSTUS	exon	8040022	8040424	.	-	.	transcript_id "Ledus.S4G111900.t1"; gene_id "Ledus.S4G111900"
Ledus.S4	AUGUSTUS	start_codon	8040422	8040424	.	-	0	transcript_id "Ledus.S4G111900.t1"; gene_id "Ledus.S4G111900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5808.t1 is derived from g3250.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27052603	27055706	.	+	.	Ledus.S1G322900
Ledus.S1	AUGUSTUS	transcript	27052603	27055706	.	+	.	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	start_codon	27052603	27052605	.	+	0	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	CDS	27052603	27052820	0.49	+	0	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	exon	27052603	27052820	.	+	.	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	intron	27052821	27053061	.	+	.	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	CDS	27053062	27053123	1	+	1	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	exon	27053062	27053123	.	+	.	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	intron	27053124	27053277	.	+	.	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	CDS	27053278	27053359	1	+	2	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	exon	27053278	27053359	.	+	.	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	intron	27053360	27053459	.	+	.	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	CDS	27053460	27053733	1	+	1	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	exon	27053460	27053733	.	+	.	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	intron	27053734	27053812	.	+	.	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	CDS	27053813	27055067	1	+	0	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	exon	27053813	27055067	.	+	.	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	intron	27055068	27055200	.	+	.	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	CDS	27055201	27055706	0.98	+	2	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	exon	27055201	27055706	.	+	.	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
Ledus.S1	AUGUSTUS	stop_codon	27055707	27055709	.	+	0	transcript_id "Ledus.S1G322900.t1"; gene_id "Ledus.S1G322900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8245.t1 is derived from g12916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10142548	10143633	.	+	.	Ledus.S5G102300
Ledus.S5	AUGUSTUS	transcript	10142548	10143633	.	+	.	transcript_id "Ledus.S5G102300.t1"; gene_id "Ledus.S5G102300"
Ledus.S5	AUGUSTUS	start_codon	10142548	10142550	.	+	0	transcript_id "Ledus.S5G102300.t1"; gene_id "Ledus.S5G102300"
Ledus.S5	AUGUSTUS	CDS	10142548	10142712	0.51	+	0	transcript_id "Ledus.S5G102300.t1"; gene_id "Ledus.S5G102300"
Ledus.S5	AUGUSTUS	exon	10142548	10142712	.	+	.	transcript_id "Ledus.S5G102300.t1"; gene_id "Ledus.S5G102300"
Ledus.S5	AUGUSTUS	intron	10142713	10143036	.	+	.	transcript_id "Ledus.S5G102300.t1"; gene_id "Ledus.S5G102300"
Ledus.S5	AUGUSTUS	CDS	10143037	10143097	0.44	+	0	transcript_id "Ledus.S5G102300.t1"; gene_id "Ledus.S5G102300"
Ledus.S5	AUGUSTUS	exon	10143037	10143097	.	+	.	transcript_id "Ledus.S5G102300.t1"; gene_id "Ledus.S5G102300"
Ledus.S5	AUGUSTUS	intron	10143098	10143319	.	+	.	transcript_id "Ledus.S5G102300.t1"; gene_id "Ledus.S5G102300"
Ledus.S5	AUGUSTUS	CDS	10143320	10143633	0.53	+	2	transcript_id "Ledus.S5G102300.t1"; gene_id "Ledus.S5G102300"
Ledus.S5	AUGUSTUS	exon	10143320	10143633	.	+	.	transcript_id "Ledus.S5G102300.t1"; gene_id "Ledus.S5G102300"
Ledus.S5	AUGUSTUS	stop_codon	10143634	10143636	.	+	0	transcript_id "Ledus.S5G102300.t1"; gene_id "Ledus.S5G102300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1705.t1 is derived from g8566.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11988460	11988849	.	-	.	Ledus.S2G158700
Ledus.S2	AUGUSTUS	transcript	11988460	11988849	.	-	.	transcript_id "Ledus.S2G158700.t1"; gene_id "Ledus.S2G158700"
Ledus.S2	AUGUSTUS	stop_codon	11988457	11988459	.	-	0	transcript_id "Ledus.S2G158700.t1"; gene_id "Ledus.S2G158700"
Ledus.S2	AUGUSTUS	CDS	11988460	11988849	0.73	-	0	transcript_id "Ledus.S2G158700.t1"; gene_id "Ledus.S2G158700"
Ledus.S2	AUGUSTUS	exon	11988460	11988849	.	-	.	transcript_id "Ledus.S2G158700.t1"; gene_id "Ledus.S2G158700"
Ledus.S2	AUGUSTUS	start_codon	11988847	11988849	.	-	0	transcript_id "Ledus.S2G158700.t1"; gene_id "Ledus.S2G158700"
# This transcript jg104.t2 is derived from g9517.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg104.t3 is derived from g9517.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg105.t1 is derived from g9518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	428596	429140	.	+	.	Ledus.C8G006500
Ledus.C8	AUGUSTUS	transcript	428596	429140	.	+	.	transcript_id "Ledus.C8G006500.t1"; gene_id "Ledus.C8G006500"
Ledus.C8	AUGUSTUS	start_codon	428596	428598	.	+	0	transcript_id "Ledus.C8G006500.t1"; gene_id "Ledus.C8G006500"
Ledus.C8	AUGUSTUS	CDS	428596	428713	0.81	+	0	transcript_id "Ledus.C8G006500.t1"; gene_id "Ledus.C8G006500"
Ledus.C8	AUGUSTUS	exon	428596	428713	.	+	.	transcript_id "Ledus.C8G006500.t1"; gene_id "Ledus.C8G006500"
Ledus.C8	AUGUSTUS	intron	428714	428794	.	+	.	transcript_id "Ledus.C8G006500.t1"; gene_id "Ledus.C8G006500"
Ledus.C8	AUGUSTUS	CDS	428795	428801	0.87	+	2	transcript_id "Ledus.C8G006500.t1"; gene_id "Ledus.C8G006500"
Ledus.C8	AUGUSTUS	exon	428795	428801	.	+	.	transcript_id "Ledus.C8G006500.t1"; gene_id "Ledus.C8G006500"
Ledus.C8	AUGUSTUS	intron	428802	428968	.	+	.	transcript_id "Ledus.C8G006500.t1"; gene_id "Ledus.C8G006500"
Ledus.C8	AUGUSTUS	CDS	428969	429140	0.82	+	1	transcript_id "Ledus.C8G006500.t1"; gene_id "Ledus.C8G006500"
Ledus.C8	AUGUSTUS	exon	428969	429140	.	+	.	transcript_id "Ledus.C8G006500.t1"; gene_id "Ledus.C8G006500"
Ledus.C8	AUGUSTUS	stop_codon	429141	429143	.	+	0	transcript_id "Ledus.C8G006500.t1"; gene_id "Ledus.C8G006500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8567.t1 is derived from g9597.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	211190	213494	.	+	.	Ledus.S3G004400
Ledus.S3	AUGUSTUS	transcript	211190	213494	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	start_codon	211190	211192	.	+	0	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	CDS	211190	211528	0.87	+	0	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	exon	211190	211528	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	intron	211529	211637	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	CDS	211638	211994	1	+	0	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	exon	211638	211994	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	intron	211995	212084	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	CDS	212085	212527	1	+	0	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	exon	212085	212527	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	intron	212528	212609	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	CDS	212610	212704	1	+	1	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	exon	212610	212704	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	intron	212705	212798	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	CDS	212799	212941	0.72	+	2	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	exon	212799	212941	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	intron	212942	213264	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	CDS	213265	213382	0.73	+	0	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	exon	213265	213382	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	intron	213383	213471	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	CDS	213472	213494	0.84	+	2	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	exon	213472	213494	.	+	.	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
Ledus.S3	AUGUSTUS	stop_codon	213495	213497	.	+	0	transcript_id "Ledus.S3G004400.t1"; gene_id "Ledus.S3G004400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg348.t1 is derived from g7209.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1849488	1850009	.	-	.	Ledus.S2G023000
Ledus.S2	AUGUSTUS	transcript	1849488	1850009	.	-	.	transcript_id "Ledus.S2G023000.t1"; gene_id "Ledus.S2G023000"
Ledus.S2	AUGUSTUS	stop_codon	1849485	1849487	.	-	0	transcript_id "Ledus.S2G023000.t1"; gene_id "Ledus.S2G023000"
Ledus.S2	AUGUSTUS	CDS	1849488	1850009	0.99	-	0	transcript_id "Ledus.S2G023000.t1"; gene_id "Ledus.S2G023000"
Ledus.S2	AUGUSTUS	exon	1849488	1850009	.	-	.	transcript_id "Ledus.S2G023000.t1"; gene_id "Ledus.S2G023000"
Ledus.S2	AUGUSTUS	start_codon	1850007	1850009	.	-	0	transcript_id "Ledus.S2G023000.t1"; gene_id "Ledus.S2G023000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10088.t1 is derived from g11118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12575464	12576343	.	-	.	Ledus.S3G156500
Ledus.S3	AUGUSTUS	transcript	12575464	12576343	.	-	.	transcript_id "Ledus.S3G156500.t1"; gene_id "Ledus.S3G156500"
Ledus.S3	AUGUSTUS	stop_codon	12575461	12575463	.	-	0	transcript_id "Ledus.S3G156500.t1"; gene_id "Ledus.S3G156500"
Ledus.S3	AUGUSTUS	CDS	12575464	12575679	0.91	-	0	transcript_id "Ledus.S3G156500.t1"; gene_id "Ledus.S3G156500"
Ledus.S3	AUGUSTUS	exon	12575464	12575679	.	-	.	transcript_id "Ledus.S3G156500.t1"; gene_id "Ledus.S3G156500"
Ledus.S3	AUGUSTUS	intron	12575680	12576202	.	-	.	transcript_id "Ledus.S3G156500.t1"; gene_id "Ledus.S3G156500"
Ledus.S3	AUGUSTUS	CDS	12576203	12576343	0.7	-	0	transcript_id "Ledus.S3G156500.t1"; gene_id "Ledus.S3G156500"
Ledus.S3	AUGUSTUS	exon	12576203	12576343	.	-	.	transcript_id "Ledus.S3G156500.t1"; gene_id "Ledus.S3G156500"
Ledus.S3	AUGUSTUS	start_codon	12576341	12576343	.	-	0	transcript_id "Ledus.S3G156500.t1"; gene_id "Ledus.S3G156500"
# This transcript jg3442.t2 is derived from g877.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3443.t1 is derived from g878.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8393556	8394445	.	-	.	Ledus.S1G086400
Ledus.S1	AUGUSTUS	transcript	8393556	8394445	.	-	.	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	stop_codon	8393553	8393555	.	-	0	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	CDS	8393556	8393719	1	-	2	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	exon	8393556	8393719	.	-	.	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	intron	8393720	8393803	.	-	.	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	CDS	8393804	8393879	1	-	0	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	exon	8393804	8393879	.	-	.	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	intron	8393880	8393970	.	-	.	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	CDS	8393971	8394084	1	-	0	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	exon	8393971	8394084	.	-	.	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	intron	8394085	8394403	.	-	.	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	CDS	8394404	8394445	1	-	0	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	exon	8394404	8394445	.	-	.	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
Ledus.S1	AUGUSTUS	start_codon	8394443	8394445	.	-	0	transcript_id "Ledus.S1G086400.t1"; gene_id "Ledus.S1G086400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg549.t1 is derived from g7410.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3174830	3176856	.	-	.	Ledus.S2G043100
Ledus.S2	AUGUSTUS	transcript	3174830	3176856	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	stop_codon	3174827	3174829	.	-	0	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	CDS	3174830	3174908	1	-	1	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	exon	3174830	3174908	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	intron	3174909	3174992	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	CDS	3174993	3175087	1	-	0	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	exon	3174993	3175087	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	intron	3175088	3175230	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	CDS	3175231	3175320	1	-	0	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	exon	3175231	3175320	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	intron	3175321	3175437	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	CDS	3175438	3175473	1	-	0	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	exon	3175438	3175473	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	intron	3175474	3175599	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	CDS	3175600	3175683	1	-	0	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	exon	3175600	3175683	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	intron	3175684	3175806	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	CDS	3175807	3175896	1	-	0	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	exon	3175807	3175896	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	intron	3175897	3175979	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	CDS	3175980	3176294	0.99	-	0	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	exon	3175980	3176294	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	intron	3176295	3176479	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	CDS	3176480	3176698	1	-	0	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	exon	3176480	3176698	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	intron	3176699	3176805	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	CDS	3176806	3176856	0.83	-	0	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	exon	3176806	3176856	.	-	.	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
Ledus.S2	AUGUSTUS	start_codon	3176854	3176856	.	-	0	transcript_id "Ledus.S2G043100.t1"; gene_id "Ledus.S2G043100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg945.t1 is derived from g7806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6250401	6251184	.	-	.	Ledus.S2G082700
Ledus.S2	AUGUSTUS	transcript	6250401	6251184	.	-	.	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	stop_codon	6250398	6250400	.	-	0	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	CDS	6250401	6250452	1	-	1	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	exon	6250401	6250452	.	-	.	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	intron	6250453	6250548	.	-	.	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	CDS	6250549	6250685	0.97	-	0	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	exon	6250549	6250685	.	-	.	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	intron	6250686	6250789	.	-	.	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	CDS	6250790	6251010	0.98	-	2	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	exon	6250790	6251010	.	-	.	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	intron	6251011	6251180	.	-	.	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	CDS	6251181	6251184	0.72	-	0	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	exon	6251181	6251184	.	-	.	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
Ledus.S2	AUGUSTUS	start_codon	6251182	6251184	.	-	0	transcript_id "Ledus.S2G082700.t1"; gene_id "Ledus.S2G082700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6660.t1 is derived from g4103.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32945400	32947319	.	+	.	Ledus.S1G408100
Ledus.S1	AUGUSTUS	transcript	32945400	32947319	.	+	.	transcript_id "Ledus.S1G408100.t1"; gene_id "Ledus.S1G408100"
Ledus.S1	AUGUSTUS	start_codon	32945400	32945402	.	+	0	transcript_id "Ledus.S1G408100.t1"; gene_id "Ledus.S1G408100"
Ledus.S1	AUGUSTUS	CDS	32945400	32946425	0.88	+	0	transcript_id "Ledus.S1G408100.t1"; gene_id "Ledus.S1G408100"
Ledus.S1	AUGUSTUS	exon	32945400	32946425	.	+	.	transcript_id "Ledus.S1G408100.t1"; gene_id "Ledus.S1G408100"
Ledus.S1	AUGUSTUS	intron	32946426	32946503	.	+	.	transcript_id "Ledus.S1G408100.t1"; gene_id "Ledus.S1G408100"
Ledus.S1	AUGUSTUS	CDS	32946504	32947319	0.99	+	0	transcript_id "Ledus.S1G408100.t1"; gene_id "Ledus.S1G408100"
Ledus.S1	AUGUSTUS	exon	32946504	32947319	.	+	.	transcript_id "Ledus.S1G408100.t1"; gene_id "Ledus.S1G408100"
Ledus.S1	AUGUSTUS	stop_codon	32947320	32947322	.	+	0	transcript_id "Ledus.S1G408100.t1"; gene_id "Ledus.S1G408100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3287.t1 is derived from g722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7273031	7273621	.	-	.	Ledus.S1G070800
Ledus.S1	AUGUSTUS	transcript	7273031	7273621	.	-	.	transcript_id "Ledus.S1G070800.t1"; gene_id "Ledus.S1G070800"
Ledus.S1	AUGUSTUS	stop_codon	7273028	7273030	.	-	0	transcript_id "Ledus.S1G070800.t1"; gene_id "Ledus.S1G070800"
Ledus.S1	AUGUSTUS	CDS	7273031	7273621	0.31	-	0	transcript_id "Ledus.S1G070800.t1"; gene_id "Ledus.S1G070800"
Ledus.S1	AUGUSTUS	exon	7273031	7273621	.	-	.	transcript_id "Ledus.S1G070800.t1"; gene_id "Ledus.S1G070800"
Ledus.S1	AUGUSTUS	start_codon	7273619	7273621	.	-	0	transcript_id "Ledus.S1G070800.t1"; gene_id "Ledus.S1G070800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12702.t1 is derived from g6324.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13970298	13970850	.	+	.	Ledus.S4G185800
Ledus.S4	AUGUSTUS	transcript	13970298	13970850	.	+	.	transcript_id "Ledus.S4G185800.t1"; gene_id "Ledus.S4G185800"
Ledus.S4	AUGUSTUS	start_codon	13970298	13970300	.	+	0	transcript_id "Ledus.S4G185800.t1"; gene_id "Ledus.S4G185800"
Ledus.S4	AUGUSTUS	CDS	13970298	13970469	1	+	0	transcript_id "Ledus.S4G185800.t1"; gene_id "Ledus.S4G185800"
Ledus.S4	AUGUSTUS	exon	13970298	13970469	.	+	.	transcript_id "Ledus.S4G185800.t1"; gene_id "Ledus.S4G185800"
Ledus.S4	AUGUSTUS	intron	13970470	13970552	.	+	.	transcript_id "Ledus.S4G185800.t1"; gene_id "Ledus.S4G185800"
Ledus.S4	AUGUSTUS	CDS	13970553	13970622	1	+	2	transcript_id "Ledus.S4G185800.t1"; gene_id "Ledus.S4G185800"
Ledus.S4	AUGUSTUS	exon	13970553	13970622	.	+	.	transcript_id "Ledus.S4G185800.t1"; gene_id "Ledus.S4G185800"
Ledus.S4	AUGUSTUS	intron	13970623	13970708	.	+	.	transcript_id "Ledus.S4G185800.t1"; gene_id "Ledus.S4G185800"
Ledus.S4	AUGUSTUS	CDS	13970709	13970850	1	+	1	transcript_id "Ledus.S4G185800.t1"; gene_id "Ledus.S4G185800"
Ledus.S4	AUGUSTUS	exon	13970709	13970850	.	+	.	transcript_id "Ledus.S4G185800.t1"; gene_id "Ledus.S4G185800"
Ledus.S4	AUGUSTUS	stop_codon	13970851	13970853	.	+	0	transcript_id "Ledus.S4G185800.t1"; gene_id "Ledus.S4G185800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12524.t1 is derived from g6145.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12728720	12729727	.	-	.	Ledus.S4G168000
Ledus.S4	AUGUSTUS	transcript	12728720	12729727	.	-	.	transcript_id "Ledus.S4G168000.t1"; gene_id "Ledus.S4G168000"
Ledus.S4	AUGUSTUS	stop_codon	12728717	12728719	.	-	0	transcript_id "Ledus.S4G168000.t1"; gene_id "Ledus.S4G168000"
Ledus.S4	AUGUSTUS	CDS	12728720	12729727	0.92	-	0	transcript_id "Ledus.S4G168000.t1"; gene_id "Ledus.S4G168000"
Ledus.S4	AUGUSTUS	exon	12728720	12729727	.	-	.	transcript_id "Ledus.S4G168000.t1"; gene_id "Ledus.S4G168000"
Ledus.S4	AUGUSTUS	start_codon	12729725	12729727	.	-	0	transcript_id "Ledus.S4G168000.t1"; gene_id "Ledus.S4G168000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6520.t1 is derived from g3963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31855048	31857004	.	+	.	Ledus.S1G394100
Ledus.S1	AUGUSTUS	transcript	31855048	31857004	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	start_codon	31855048	31855050	.	+	0	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	CDS	31855048	31855127	0.96	+	0	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	exon	31855048	31855127	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	intron	31855128	31855205	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	CDS	31855206	31855410	1	+	1	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	exon	31855206	31855410	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	intron	31855411	31855508	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	CDS	31855509	31855709	1	+	0	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	exon	31855509	31855709	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	intron	31855710	31855779	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	CDS	31855780	31855994	1	+	0	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	exon	31855780	31855994	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	intron	31855995	31856070	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	CDS	31856071	31856324	1	+	1	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	exon	31856071	31856324	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	intron	31856325	31856398	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	CDS	31856399	31856451	1	+	2	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	exon	31856399	31856451	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	intron	31856452	31856515	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	CDS	31856516	31857004	0.99	+	0	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	exon	31856516	31857004	.	+	.	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
Ledus.S1	AUGUSTUS	stop_codon	31857005	31857007	.	+	0	transcript_id "Ledus.S1G394100.t1"; gene_id "Ledus.S1G394100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg998.t1 is derived from g7859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6550941	6554183	.	+	.	Ledus.S2G088000
Ledus.S2	AUGUSTUS	transcript	6550941	6554183	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	start_codon	6550941	6550943	.	+	0	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6550941	6551298	0.99	+	0	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6550941	6551298	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	intron	6551299	6551535	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6551536	6551841	1	+	2	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6551536	6551841	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	intron	6551842	6551935	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6551936	6551961	1	+	2	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6551936	6551961	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	intron	6551962	6552127	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6552128	6552310	1	+	0	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6552128	6552310	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	intron	6552311	6552413	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6552414	6552545	0.94	+	0	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6552414	6552545	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	intron	6552546	6552659	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6552660	6552748	1	+	0	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6552660	6552748	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	intron	6552749	6552840	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6552841	6553082	1	+	1	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6552841	6553082	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	intron	6553083	6553180	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6553181	6553272	1	+	2	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6553181	6553272	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	intron	6553273	6553395	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6553396	6553452	0.91	+	0	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6553396	6553452	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	intron	6553453	6553542	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6553543	6553610	0.51	+	0	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6553543	6553610	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	intron	6553611	6553705	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6553706	6553812	1	+	1	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6553706	6553812	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	intron	6553813	6553925	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6553926	6553987	1	+	2	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6553926	6553987	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	intron	6553988	6554075	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	CDS	6554076	6554183	0.96	+	0	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	exon	6554076	6554183	.	+	.	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
Ledus.S2	AUGUSTUS	stop_codon	6554184	6554186	.	+	0	transcript_id "Ledus.S2G088000.t1"; gene_id "Ledus.S2G088000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2911.t1 is derived from g346.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4530394	4532207	.	-	.	Ledus.S1G033200
Ledus.S1	AUGUSTUS	transcript	4530394	4532207	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	stop_codon	4530391	4530393	.	-	0	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	CDS	4530394	4530648	0.49	-	0	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	exon	4530394	4530648	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	intron	4530649	4530718	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	CDS	4530719	4530882	1	-	2	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	exon	4530719	4530882	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	intron	4530883	4530966	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	CDS	4530967	4531176	0.98	-	2	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	exon	4530967	4531176	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	intron	4531177	4531517	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	CDS	4531518	4531661	0.98	-	2	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	exon	4531518	4531661	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	intron	4531662	4531745	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	CDS	4531746	4531932	1	-	0	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	exon	4531746	4531932	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	intron	4531933	4532030	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	CDS	4532031	4532081	1	-	0	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	exon	4532031	4532081	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	intron	4532082	4532174	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	CDS	4532175	4532207	0.93	-	0	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	exon	4532175	4532207	.	-	.	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
Ledus.S1	AUGUSTUS	start_codon	4532205	4532207	.	-	0	transcript_id "Ledus.S1G033200.t1"; gene_id "Ledus.S1G033200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9023.t1 is derived from g10053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3901592	3904483	.	-	.	Ledus.S3G050000
Ledus.S3	AUGUSTUS	transcript	3901592	3904483	.	-	.	transcript_id "Ledus.S3G050000.t1"; gene_id "Ledus.S3G050000"
Ledus.S3	AUGUSTUS	stop_codon	3901589	3901591	.	-	0	transcript_id "Ledus.S3G050000.t1"; gene_id "Ledus.S3G050000"
Ledus.S3	AUGUSTUS	CDS	3901592	3904010	0.8	-	1	transcript_id "Ledus.S3G050000.t1"; gene_id "Ledus.S3G050000"
Ledus.S3	AUGUSTUS	exon	3901592	3904010	.	-	.	transcript_id "Ledus.S3G050000.t1"; gene_id "Ledus.S3G050000"
Ledus.S3	AUGUSTUS	intron	3904011	3904113	.	-	.	transcript_id "Ledus.S3G050000.t1"; gene_id "Ledus.S3G050000"
Ledus.S3	AUGUSTUS	CDS	3904114	3904214	0.55	-	0	transcript_id "Ledus.S3G050000.t1"; gene_id "Ledus.S3G050000"
Ledus.S3	AUGUSTUS	exon	3904114	3904214	.	-	.	transcript_id "Ledus.S3G050000.t1"; gene_id "Ledus.S3G050000"
Ledus.S3	AUGUSTUS	intron	3904215	3904336	.	-	.	transcript_id "Ledus.S3G050000.t1"; gene_id "Ledus.S3G050000"
Ledus.S3	AUGUSTUS	CDS	3904337	3904483	0.29	-	0	transcript_id "Ledus.S3G050000.t1"; gene_id "Ledus.S3G050000"
Ledus.S3	AUGUSTUS	exon	3904337	3904483	.	-	.	transcript_id "Ledus.S3G050000.t1"; gene_id "Ledus.S3G050000"
Ledus.S3	AUGUSTUS	start_codon	3904481	3904483	.	-	0	transcript_id "Ledus.S3G050000.t1"; gene_id "Ledus.S3G050000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3117.t1 is derived from g552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6128726	6135857	.	+	.	Ledus.S1G053800
Ledus.S1	AUGUSTUS	transcript	6128726	6135857	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	start_codon	6128726	6128728	.	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6128726	6128778	0.38	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6128726	6128778	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6128779	6129077	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6129078	6129332	0.24	+	1	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6129078	6129332	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6129333	6129639	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6129640	6130153	0.41	+	1	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6129640	6130153	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6130154	6130560	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6130561	6130702	1	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6130561	6130702	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6130703	6130797	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6130798	6130853	1	+	2	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6130798	6130853	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6130854	6130926	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6130927	6131184	1	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6130927	6131184	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6131185	6131304	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6131305	6131501	1	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6131305	6131501	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6131502	6131606	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6131607	6131685	1	+	1	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6131607	6131685	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6131686	6131825	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6131826	6131864	1	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6131826	6131864	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6131865	6131954	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6131955	6132074	0.99	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6131955	6132074	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6132075	6132193	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6132194	6132295	1	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6132194	6132295	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6132296	6132393	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6132394	6132477	1	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6132394	6132477	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6132478	6132620	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6132621	6132863	1	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6132621	6132863	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6132864	6132984	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6132985	6133110	0.84	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6132985	6133110	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6133111	6133229	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6133230	6133304	0.8	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6133230	6133304	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6133305	6133399	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6133400	6133471	1	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6133400	6133471	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6133472	6133558	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6133559	6133678	1	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6133559	6133678	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6133679	6133783	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6133784	6133881	0.99	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6133784	6133881	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6133882	6133996	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6133997	6134156	1	+	1	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6133997	6134156	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6134157	6134247	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6134248	6134346	1	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6134248	6134346	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6134347	6134417	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6134418	6134618	0.98	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6134418	6134618	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6134619	6134720	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6134721	6134814	0.97	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6134721	6134814	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6134815	6134936	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6134937	6135070	1	+	2	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6134937	6135070	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6135071	6135494	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6135495	6135857	0.88	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6135495	6135857	.	+	.	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	stop_codon	6135858	6135860	.	+	0	transcript_id "Ledus.S1G053800.t1"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	transcript	6128726	6135857	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	start_codon	6128726	6128728	.	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6128726	6128778	0.32	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6128726	6128778	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6128779	6129077	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6129078	6129332	0.23	+	1	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6129078	6129332	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6129333	6129639	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6129640	6130153	0.41	+	1	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6129640	6130153	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6130154	6130560	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6130561	6130702	1	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6130561	6130702	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6130703	6130797	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6130798	6130853	1	+	2	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6130798	6130853	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6130854	6130926	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6130927	6131184	0.99	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6130927	6131184	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6131185	6131304	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6131305	6131501	0.99	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6131305	6131501	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6131502	6131606	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6131607	6131685	1	+	1	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6131607	6131685	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6131686	6131825	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6131826	6131864	1	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6131826	6131864	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6131865	6131954	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6131955	6132074	1	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6131955	6132074	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6132075	6132193	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6132194	6132295	1	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6132194	6132295	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6132296	6132393	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6132394	6132477	1	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6132394	6132477	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6132478	6132620	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6132621	6132863	1	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6132621	6132863	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6132864	6132984	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6132985	6133110	0.81	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6132985	6133110	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6133111	6133229	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6133230	6133304	0.69	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6133230	6133304	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6133305	6133399	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6133400	6133471	1	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6133400	6133471	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6133472	6133558	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6133559	6133678	0.99	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6133559	6133678	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6133679	6133783	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6133784	6133881	0.99	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6133784	6133881	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6133882	6133996	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6133997	6134156	1	+	1	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6133997	6134156	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6134157	6134247	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6134248	6134346	1	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6134248	6134346	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6134347	6134417	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6134418	6134618	0.99	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6134418	6134618	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6134619	6134720	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6134721	6134814	0.99	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6134721	6134814	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6134815	6134936	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6134937	6135070	1	+	2	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6134937	6135070	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	intron	6135071	6135491	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	CDS	6135492	6135857	0.87	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	exon	6135492	6135857	.	+	.	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
Ledus.S1	AUGUSTUS	stop_codon	6135858	6135860	.	+	0	transcript_id "Ledus.S1G053800.t2"; gene_id "Ledus.S1G053800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10813.t1 is derived from g11845.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17956964	17959037	.	-	.	Ledus.S3G229000
Ledus.S3	AUGUSTUS	transcript	17956964	17959037	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	stop_codon	17956961	17956963	.	-	0	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	CDS	17956964	17957071	1	-	0	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	exon	17956964	17957071	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	intron	17957072	17957143	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	CDS	17957144	17957204	1	-	1	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	exon	17957144	17957204	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	intron	17957205	17957301	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	CDS	17957302	17957801	0.77	-	0	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	exon	17957302	17957801	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	intron	17957802	17957919	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	CDS	17957920	17958015	0.82	-	0	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	exon	17957920	17958015	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	intron	17958016	17958108	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	CDS	17958109	17958253	0.96	-	1	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	exon	17958109	17958253	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	intron	17958254	17958347	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	CDS	17958348	17958402	0.98	-	2	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	exon	17958348	17958402	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	intron	17958403	17958475	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	CDS	17958476	17958657	0.75	-	1	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	exon	17958476	17958657	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	intron	17958658	17958993	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	CDS	17958994	17959037	0.94	-	0	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	exon	17958994	17959037	.	-	.	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
Ledus.S3	AUGUSTUS	start_codon	17959035	17959037	.	-	0	transcript_id "Ledus.S3G229000.t1"; gene_id "Ledus.S3G229000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1179.t1 is derived from g8040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8263953	8268256	.	-	.	Ledus.S2G106100
Ledus.S2	AUGUSTUS	transcript	8263953	8268256	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	stop_codon	8263950	8263952	.	-	0	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8263953	8264036	0.96	-	0	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8263953	8264036	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8264037	8264144	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8264145	8264279	0.55	-	0	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8264145	8264279	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8264280	8264363	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8264364	8264417	1	-	0	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8264364	8264417	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8264418	8264590	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8264591	8264671	1	-	0	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8264591	8264671	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8264672	8264823	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8264824	8264919	1	-	0	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8264824	8264919	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8264920	8265021	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8265022	8265197	0.95	-	2	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8265022	8265197	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8265198	8265300	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8265301	8265374	0.96	-	1	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8265301	8265374	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8265375	8265594	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8265595	8265702	1	-	1	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8265595	8265702	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8265703	8265775	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8265776	8265941	0.98	-	2	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8265776	8265941	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8265942	8266140	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8266141	8266243	0.88	-	0	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8266141	8266243	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8266244	8266376	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8266377	8266487	1	-	0	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8266377	8266487	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8266488	8266666	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8266667	8266739	1	-	1	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8266667	8266739	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8266740	8266882	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8266883	8266981	1	-	1	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8266883	8266981	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8266982	8267193	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8267194	8267294	1	-	0	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8267194	8267294	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8267295	8267373	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8267374	8267488	1	-	1	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8267374	8267488	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	intron	8267489	8268056	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	CDS	8268057	8268256	0.23	-	0	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	exon	8268057	8268256	.	-	.	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
Ledus.S2	AUGUSTUS	start_codon	8268254	8268256	.	-	0	transcript_id "Ledus.S2G106100.t1"; gene_id "Ledus.S2G106100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg3297.t1 is derived from g732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7364839	7365983	.	+	.	Ledus.S1G071800
Ledus.S1	AUGUSTUS	transcript	7365286	7365983	.	+	.	transcript_id "Ledus.S1G071800.t1"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	start_codon	7365286	7365288	.	+	0	transcript_id "Ledus.S1G071800.t1"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	CDS	7365286	7365303	1	+	0	transcript_id "Ledus.S1G071800.t1"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	exon	7365286	7365303	.	+	.	transcript_id "Ledus.S1G071800.t1"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	intron	7365304	7365401	.	+	.	transcript_id "Ledus.S1G071800.t1"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	CDS	7365402	7365983	1	+	0	transcript_id "Ledus.S1G071800.t1"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	exon	7365402	7365983	.	+	.	transcript_id "Ledus.S1G071800.t1"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	stop_codon	7365984	7365986	.	+	0	transcript_id "Ledus.S1G071800.t1"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	transcript	7364839	7365983	.	+	.	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	start_codon	7364839	7364841	.	+	0	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	CDS	7364839	7364952	0.96	+	0	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	exon	7364839	7364952	.	+	.	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	intron	7364953	7365193	.	+	.	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	CDS	7365194	7365221	1	+	0	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	exon	7365194	7365221	.	+	.	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	intron	7365222	7365297	.	+	.	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	CDS	7365298	7365308	1	+	2	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	exon	7365298	7365308	.	+	.	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	intron	7365309	7365401	.	+	.	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	CDS	7365402	7365983	1	+	0	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	exon	7365402	7365983	.	+	.	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	stop_codon	7365984	7365986	.	+	0	transcript_id "Ledus.S1G071800.t2"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	transcript	7364839	7365983	.	+	.	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	start_codon	7364839	7364841	.	+	0	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	CDS	7364839	7364952	0.76	+	0	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	exon	7364839	7364952	.	+	.	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	intron	7364953	7365059	.	+	.	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	CDS	7365060	7365096	0.34	+	0	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	exon	7365060	7365096	.	+	.	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	intron	7365097	7365297	.	+	.	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	CDS	7365298	7365308	0.98	+	2	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	exon	7365298	7365308	.	+	.	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	intron	7365309	7365401	.	+	.	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	CDS	7365402	7365983	1	+	0	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	exon	7365402	7365983	.	+	.	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
Ledus.S1	AUGUSTUS	stop_codon	7365984	7365986	.	+	0	transcript_id "Ledus.S1G071800.t3"; gene_id "Ledus.S1G071800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10363.t1 is derived from g11393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14435889	14438956	.	-	.	Ledus.S3G184000
Ledus.S3	AUGUSTUS	transcript	14435889	14438956	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	stop_codon	14435886	14435888	.	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14435889	14435957	0.98	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14435889	14435957	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14435958	14436068	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14436069	14436143	0.98	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14436069	14436143	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14436144	14436247	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14436248	14436304	0.99	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14436248	14436304	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14436305	14436408	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14436409	14436525	0.93	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14436409	14436525	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14436526	14436684	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14436685	14436795	1	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14436685	14436795	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14436796	14436893	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14436894	14437016	1	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14436894	14437016	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14437017	14437153	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14437154	14437243	1	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14437154	14437243	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14437244	14437359	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14437360	14437485	0.97	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14437360	14437485	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14437486	14437666	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14437667	14437720	0.96	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14437667	14437720	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14437721	14437804	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14437805	14437885	0.99	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14437805	14437885	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14437886	14438021	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14438022	14438129	1	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14438022	14438129	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14438130	14438386	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14438387	14438458	1	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14438387	14438458	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14438459	14438599	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14438600	14438662	0.63	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14438600	14438662	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	intron	14438663	14438785	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	CDS	14438786	14438956	0.4	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	exon	14438786	14438956	.	-	.	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
Ledus.S3	AUGUSTUS	start_codon	14438954	14438956	.	-	0	transcript_id "Ledus.S3G184000.t1"; gene_id "Ledus.S3G184000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5497.t1 is derived from g2936.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24630093	24634368	.	-	.	Ledus.S1G291800
Ledus.S1	AUGUSTUS	transcript	24630093	24634368	.	-	.	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	stop_codon	24630090	24630092	.	-	0	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	CDS	24630093	24630255	0.84	-	1	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	exon	24630093	24630255	.	-	.	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	intron	24630256	24630527	.	-	.	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	CDS	24630528	24630980	0.72	-	1	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	exon	24630528	24630980	.	-	.	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	intron	24630981	24631135	.	-	.	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	CDS	24631136	24631670	0.76	-	2	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	exon	24631136	24631670	.	-	.	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	intron	24631671	24631926	.	-	.	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	CDS	24631927	24631980	0.35	-	2	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	exon	24631927	24631980	.	-	.	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	intron	24631981	24632198	.	-	.	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	CDS	24632199	24633482	0.91	-	2	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	exon	24632199	24633482	.	-	.	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	intron	24633483	24634001	.	-	.	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	CDS	24634002	24634368	0.94	-	0	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	exon	24634002	24634368	.	-	.	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
Ledus.S1	AUGUSTUS	start_codon	24634366	24634368	.	-	0	transcript_id "Ledus.S1G291800.t1"; gene_id "Ledus.S1G291800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4441.t1 is derived from g1877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17127780	17133163	.	+	.	Ledus.S1G186200
Ledus.S1	AUGUSTUS	transcript	17127780	17133163	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	start_codon	17127780	17127782	.	+	0	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	CDS	17127780	17128099	0.5	+	0	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	exon	17127780	17128099	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	intron	17128100	17128198	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	CDS	17128199	17128309	1	+	1	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	exon	17128199	17128309	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	intron	17128310	17128410	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	CDS	17128411	17128767	1	+	1	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	exon	17128411	17128767	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	intron	17128768	17128859	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	CDS	17128860	17129179	0.99	+	1	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	exon	17128860	17129179	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	intron	17129180	17129295	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	CDS	17129296	17129387	1	+	2	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	exon	17129296	17129387	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	intron	17129388	17129479	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	CDS	17129480	17130171	0.4	+	0	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	exon	17129480	17130171	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	intron	17130172	17130321	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	CDS	17130322	17130436	1	+	1	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	exon	17130322	17130436	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	intron	17130437	17130555	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	CDS	17130556	17130711	0.82	+	0	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	exon	17130556	17130711	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	intron	17130712	17130837	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	CDS	17130838	17131528	0.94	+	0	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	exon	17130838	17131528	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	intron	17131529	17131680	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	CDS	17131681	17131887	0.81	+	2	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	exon	17131681	17131887	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	intron	17131888	17131988	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	CDS	17131989	17133163	1	+	2	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	exon	17131989	17133163	.	+	.	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
Ledus.S1	AUGUSTUS	stop_codon	17133164	17133166	.	+	0	transcript_id "Ledus.S1G186200.t1"; gene_id "Ledus.S1G186200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3843.t1 is derived from g1279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13105148	13105626	.	+	.	Ledus.S1G126400
Ledus.S1	AUGUSTUS	transcript	13105148	13105626	.	+	.	transcript_id "Ledus.S1G126400.t1"; gene_id "Ledus.S1G126400"
Ledus.S1	AUGUSTUS	start_codon	13105148	13105150	.	+	0	transcript_id "Ledus.S1G126400.t1"; gene_id "Ledus.S1G126400"
Ledus.S1	AUGUSTUS	CDS	13105148	13105303	0.48	+	0	transcript_id "Ledus.S1G126400.t1"; gene_id "Ledus.S1G126400"
Ledus.S1	AUGUSTUS	exon	13105148	13105303	.	+	.	transcript_id "Ledus.S1G126400.t1"; gene_id "Ledus.S1G126400"
Ledus.S1	AUGUSTUS	intron	13105304	13105509	.	+	.	transcript_id "Ledus.S1G126400.t1"; gene_id "Ledus.S1G126400"
Ledus.S1	AUGUSTUS	CDS	13105510	13105626	0.26	+	0	transcript_id "Ledus.S1G126400.t1"; gene_id "Ledus.S1G126400"
Ledus.S1	AUGUSTUS	exon	13105510	13105626	.	+	.	transcript_id "Ledus.S1G126400.t1"; gene_id "Ledus.S1G126400"
Ledus.S1	AUGUSTUS	stop_codon	13105627	13105629	.	+	0	transcript_id "Ledus.S1G126400.t1"; gene_id "Ledus.S1G126400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3322.t1 is derived from g757.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7455731	7458382	.	-	.	Ledus.S1G074300
Ledus.S1	AUGUSTUS	transcript	7455731	7458382	.	-	.	transcript_id "Ledus.S1G074300.t1"; gene_id "Ledus.S1G074300"
Ledus.S1	AUGUSTUS	stop_codon	7455728	7455730	.	-	0	transcript_id "Ledus.S1G074300.t1"; gene_id "Ledus.S1G074300"
Ledus.S1	AUGUSTUS	CDS	7455731	7458382	0.67	-	0	transcript_id "Ledus.S1G074300.t1"; gene_id "Ledus.S1G074300"
Ledus.S1	AUGUSTUS	exon	7455731	7458382	.	-	.	transcript_id "Ledus.S1G074300.t1"; gene_id "Ledus.S1G074300"
Ledus.S1	AUGUSTUS	start_codon	7458380	7458382	.	-	0	transcript_id "Ledus.S1G074300.t1"; gene_id "Ledus.S1G074300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4694.t1 is derived from g2132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19090875	19091613	.	-	.	Ledus.S1G211500
Ledus.S1	AUGUSTUS	transcript	19090875	19091613	.	-	.	transcript_id "Ledus.S1G211500.t1"; gene_id "Ledus.S1G211500"
Ledus.S1	AUGUSTUS	stop_codon	19090872	19090874	.	-	0	transcript_id "Ledus.S1G211500.t1"; gene_id "Ledus.S1G211500"
Ledus.S1	AUGUSTUS	CDS	19090875	19091120	0.98	-	0	transcript_id "Ledus.S1G211500.t1"; gene_id "Ledus.S1G211500"
Ledus.S1	AUGUSTUS	exon	19090875	19091120	.	-	.	transcript_id "Ledus.S1G211500.t1"; gene_id "Ledus.S1G211500"
Ledus.S1	AUGUSTUS	intron	19091121	19091241	.	-	.	transcript_id "Ledus.S1G211500.t1"; gene_id "Ledus.S1G211500"
Ledus.S1	AUGUSTUS	CDS	19091242	19091613	0.92	-	0	transcript_id "Ledus.S1G211500.t1"; gene_id "Ledus.S1G211500"
Ledus.S1	AUGUSTUS	exon	19091242	19091613	.	-	.	transcript_id "Ledus.S1G211500.t1"; gene_id "Ledus.S1G211500"
Ledus.S1	AUGUSTUS	start_codon	19091611	19091613	.	-	0	transcript_id "Ledus.S1G211500.t1"; gene_id "Ledus.S1G211500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7660.t1 is derived from g12331.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4889651	4890058	.	+	.	Ledus.S5G043800
Ledus.S5	AUGUSTUS	transcript	4889651	4890058	.	+	.	transcript_id "Ledus.S5G043800.t1"; gene_id "Ledus.S5G043800"
Ledus.S5	AUGUSTUS	start_codon	4889651	4889653	.	+	0	transcript_id "Ledus.S5G043800.t1"; gene_id "Ledus.S5G043800"
Ledus.S5	AUGUSTUS	CDS	4889651	4890058	0.97	+	0	transcript_id "Ledus.S5G043800.t1"; gene_id "Ledus.S5G043800"
Ledus.S5	AUGUSTUS	exon	4889651	4890058	.	+	.	transcript_id "Ledus.S5G043800.t1"; gene_id "Ledus.S5G043800"
Ledus.S5	AUGUSTUS	stop_codon	4890059	4890061	.	+	0	transcript_id "Ledus.S5G043800.t1"; gene_id "Ledus.S5G043800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12355.t1 is derived from g5976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11379127	11380631	.	-	.	Ledus.S4G151100
Ledus.S4	AUGUSTUS	transcript	11379127	11380631	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	stop_codon	11379124	11379126	.	-	0	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	CDS	11379127	11379273	0.99	-	0	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	exon	11379127	11379273	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	intron	11379274	11379356	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	CDS	11379357	11379485	1	-	0	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	exon	11379357	11379485	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	intron	11379486	11379575	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	CDS	11379576	11379705	1	-	1	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	exon	11379576	11379705	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	intron	11379706	11379785	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	CDS	11379786	11379857	1	-	1	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	exon	11379786	11379857	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	intron	11379858	11379980	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	CDS	11379981	11380046	1	-	1	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	exon	11379981	11380046	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	intron	11380047	11380232	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	CDS	11380233	11380414	1	-	0	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	exon	11380233	11380414	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	intron	11380415	11380538	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	CDS	11380539	11380631	1	-	0	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	exon	11380539	11380631	.	-	.	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
Ledus.S4	AUGUSTUS	start_codon	11380629	11380631	.	-	0	transcript_id "Ledus.S4G151100.t1"; gene_id "Ledus.S4G151100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1199.t1 is derived from g8060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8522011	8522846	.	+	.	Ledus.S2G108100
Ledus.S2	AUGUSTUS	transcript	8522011	8522846	.	+	.	transcript_id "Ledus.S2G108100.t1"; gene_id "Ledus.S2G108100"
Ledus.S2	AUGUSTUS	start_codon	8522011	8522013	.	+	0	transcript_id "Ledus.S2G108100.t1"; gene_id "Ledus.S2G108100"
Ledus.S2	AUGUSTUS	CDS	8522011	8522397	1	+	0	transcript_id "Ledus.S2G108100.t1"; gene_id "Ledus.S2G108100"
Ledus.S2	AUGUSTUS	exon	8522011	8522397	.	+	.	transcript_id "Ledus.S2G108100.t1"; gene_id "Ledus.S2G108100"
Ledus.S2	AUGUSTUS	intron	8522398	8522561	.	+	.	transcript_id "Ledus.S2G108100.t1"; gene_id "Ledus.S2G108100"
Ledus.S2	AUGUSTUS	CDS	8522562	8522846	1	+	0	transcript_id "Ledus.S2G108100.t1"; gene_id "Ledus.S2G108100"
Ledus.S2	AUGUSTUS	exon	8522562	8522846	.	+	.	transcript_id "Ledus.S2G108100.t1"; gene_id "Ledus.S2G108100"
Ledus.S2	AUGUSTUS	stop_codon	8522847	8522849	.	+	0	transcript_id "Ledus.S2G108100.t1"; gene_id "Ledus.S2G108100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4035.t1 is derived from g1471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14270401	14273221	.	+	.	Ledus.S1G145600
Ledus.S1	AUGUSTUS	transcript	14270401	14273221	.	+	.	transcript_id "Ledus.S1G145600.t1"; gene_id "Ledus.S1G145600"
Ledus.S1	AUGUSTUS	start_codon	14270401	14270403	.	+	0	transcript_id "Ledus.S1G145600.t1"; gene_id "Ledus.S1G145600"
Ledus.S1	AUGUSTUS	CDS	14270401	14271549	0.98	+	0	transcript_id "Ledus.S1G145600.t1"; gene_id "Ledus.S1G145600"
Ledus.S1	AUGUSTUS	exon	14270401	14271549	.	+	.	transcript_id "Ledus.S1G145600.t1"; gene_id "Ledus.S1G145600"
Ledus.S1	AUGUSTUS	intron	14271550	14271707	.	+	.	transcript_id "Ledus.S1G145600.t1"; gene_id "Ledus.S1G145600"
Ledus.S1	AUGUSTUS	CDS	14271708	14272181	1	+	0	transcript_id "Ledus.S1G145600.t1"; gene_id "Ledus.S1G145600"
Ledus.S1	AUGUSTUS	exon	14271708	14272181	.	+	.	transcript_id "Ledus.S1G145600.t1"; gene_id "Ledus.S1G145600"
Ledus.S1	AUGUSTUS	intron	14272182	14272279	.	+	.	transcript_id "Ledus.S1G145600.t1"; gene_id "Ledus.S1G145600"
Ledus.S1	AUGUSTUS	CDS	14272280	14273221	1	+	0	transcript_id "Ledus.S1G145600.t1"; gene_id "Ledus.S1G145600"
Ledus.S1	AUGUSTUS	exon	14272280	14273221	.	+	.	transcript_id "Ledus.S1G145600.t1"; gene_id "Ledus.S1G145600"
Ledus.S1	AUGUSTUS	stop_codon	14273222	14273224	.	+	0	transcript_id "Ledus.S1G145600.t1"; gene_id "Ledus.S1G145600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10588.t1 is derived from g11618.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16266653	16267348	.	-	.	Ledus.S3G206500
Ledus.S3	AUGUSTUS	transcript	16266653	16267348	.	-	.	transcript_id "Ledus.S3G206500.t1"; gene_id "Ledus.S3G206500"
Ledus.S3	AUGUSTUS	stop_codon	16266650	16266652	.	-	0	transcript_id "Ledus.S3G206500.t1"; gene_id "Ledus.S3G206500"
Ledus.S3	AUGUSTUS	CDS	16266653	16266658	0.87	-	0	transcript_id "Ledus.S3G206500.t1"; gene_id "Ledus.S3G206500"
Ledus.S3	AUGUSTUS	exon	16266653	16266658	.	-	.	transcript_id "Ledus.S3G206500.t1"; gene_id "Ledus.S3G206500"
Ledus.S3	AUGUSTUS	intron	16266659	16266825	.	-	.	transcript_id "Ledus.S3G206500.t1"; gene_id "Ledus.S3G206500"
Ledus.S3	AUGUSTUS	CDS	16266826	16266905	0.87	-	2	transcript_id "Ledus.S3G206500.t1"; gene_id "Ledus.S3G206500"
Ledus.S3	AUGUSTUS	exon	16266826	16266905	.	-	.	transcript_id "Ledus.S3G206500.t1"; gene_id "Ledus.S3G206500"
Ledus.S3	AUGUSTUS	intron	16266906	16267155	.	-	.	transcript_id "Ledus.S3G206500.t1"; gene_id "Ledus.S3G206500"
Ledus.S3	AUGUSTUS	CDS	16267156	16267348	0.28	-	0	transcript_id "Ledus.S3G206500.t1"; gene_id "Ledus.S3G206500"
Ledus.S3	AUGUSTUS	exon	16267156	16267348	.	-	.	transcript_id "Ledus.S3G206500.t1"; gene_id "Ledus.S3G206500"
Ledus.S3	AUGUSTUS	start_codon	16267346	16267348	.	-	0	transcript_id "Ledus.S3G206500.t1"; gene_id "Ledus.S3G206500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12439.t1 is derived from g6060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12018862	12019767	.	-	.	Ledus.S4G159500
Ledus.S4	AUGUSTUS	transcript	12018862	12019767	.	-	.	transcript_id "Ledus.S4G159500.t1"; gene_id "Ledus.S4G159500"
Ledus.S4	AUGUSTUS	stop_codon	12018859	12018861	.	-	0	transcript_id "Ledus.S4G159500.t1"; gene_id "Ledus.S4G159500"
Ledus.S4	AUGUSTUS	CDS	12018862	12019767	0.47	-	0	transcript_id "Ledus.S4G159500.t1"; gene_id "Ledus.S4G159500"
Ledus.S4	AUGUSTUS	exon	12018862	12019767	.	-	.	transcript_id "Ledus.S4G159500.t1"; gene_id "Ledus.S4G159500"
Ledus.S4	AUGUSTUS	start_codon	12019765	12019767	.	-	0	transcript_id "Ledus.S4G159500.t1"; gene_id "Ledus.S4G159500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9859.t1 is derived from g10889.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10620575	10620961	.	-	.	Ledus.S3G133600
Ledus.S3	AUGUSTUS	transcript	10620575	10620961	.	-	.	transcript_id "Ledus.S3G133600.t1"; gene_id "Ledus.S3G133600"
Ledus.S3	AUGUSTUS	stop_codon	10620572	10620574	.	-	0	transcript_id "Ledus.S3G133600.t1"; gene_id "Ledus.S3G133600"
Ledus.S3	AUGUSTUS	CDS	10620575	10620961	0.57	-	0	transcript_id "Ledus.S3G133600.t1"; gene_id "Ledus.S3G133600"
Ledus.S3	AUGUSTUS	exon	10620575	10620961	.	-	.	transcript_id "Ledus.S3G133600.t1"; gene_id "Ledus.S3G133600"
Ledus.S3	AUGUSTUS	start_codon	10620959	10620961	.	-	0	transcript_id "Ledus.S3G133600.t1"; gene_id "Ledus.S3G133600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5913.t1 is derived from g3356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27750474	27751298	.	+	.	Ledus.S1G333400
Ledus.S1	AUGUSTUS	transcript	27750474	27751298	.	+	.	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	start_codon	27750474	27750476	.	+	0	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	CDS	27750474	27750521	1	+	0	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	exon	27750474	27750521	.	+	.	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	intron	27750522	27750612	.	+	.	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	CDS	27750613	27750832	1	+	0	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	exon	27750613	27750832	.	+	.	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	intron	27750833	27750932	.	+	.	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	CDS	27750933	27751000	1	+	2	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	exon	27750933	27751000	.	+	.	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	intron	27751001	27751169	.	+	.	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	CDS	27751170	27751298	0.98	+	0	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	exon	27751170	27751298	.	+	.	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
Ledus.S1	AUGUSTUS	stop_codon	27751299	27751301	.	+	0	transcript_id "Ledus.S1G333400.t1"; gene_id "Ledus.S1G333400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4768.t1 is derived from g2206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19665346	19669045	.	-	.	Ledus.S1G218900
Ledus.S1	AUGUSTUS	transcript	19665346	19669045	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	stop_codon	19665343	19665345	.	-	0	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	CDS	19665346	19665529	1	-	1	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	exon	19665346	19665529	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	intron	19665530	19665658	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	CDS	19665659	19665850	0.92	-	1	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	exon	19665659	19665850	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	intron	19665851	19665973	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	CDS	19665974	19666111	0.99	-	1	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	exon	19665974	19666111	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	intron	19666112	19666214	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	CDS	19666215	19666364	0.9	-	1	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	exon	19666215	19666364	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	intron	19666365	19666506	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	CDS	19666507	19668545	0.87	-	0	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	exon	19666507	19668545	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	intron	19668546	19668711	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	CDS	19668712	19668838	0.91	-	1	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	exon	19668712	19668838	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	intron	19668839	19669022	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	CDS	19669023	19669045	0.51	-	0	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	exon	19669023	19669045	.	-	.	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
Ledus.S1	AUGUSTUS	start_codon	19669043	19669045	.	-	0	transcript_id "Ledus.S1G218900.t1"; gene_id "Ledus.S1G218900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9389.t1 is derived from g10419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6483605	6484202	.	-	.	Ledus.S3G086600
Ledus.S3	AUGUSTUS	transcript	6483605	6484202	.	-	.	transcript_id "Ledus.S3G086600.t1"; gene_id "Ledus.S3G086600"
Ledus.S3	AUGUSTUS	stop_codon	6483602	6483604	.	-	0	transcript_id "Ledus.S3G086600.t1"; gene_id "Ledus.S3G086600"
Ledus.S3	AUGUSTUS	CDS	6483605	6483753	0.97	-	2	transcript_id "Ledus.S3G086600.t1"; gene_id "Ledus.S3G086600"
Ledus.S3	AUGUSTUS	exon	6483605	6483753	.	-	.	transcript_id "Ledus.S3G086600.t1"; gene_id "Ledus.S3G086600"
Ledus.S3	AUGUSTUS	intron	6483754	6483850	.	-	.	transcript_id "Ledus.S3G086600.t1"; gene_id "Ledus.S3G086600"
Ledus.S3	AUGUSTUS	CDS	6483851	6484202	0.72	-	0	transcript_id "Ledus.S3G086600.t1"; gene_id "Ledus.S3G086600"
Ledus.S3	AUGUSTUS	exon	6483851	6484202	.	-	.	transcript_id "Ledus.S3G086600.t1"; gene_id "Ledus.S3G086600"
Ledus.S3	AUGUSTUS	start_codon	6484200	6484202	.	-	0	transcript_id "Ledus.S3G086600.t1"; gene_id "Ledus.S3G086600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5122.t1 is derived from g2561.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21853098	21854994	.	-	.	Ledus.S1G254300
Ledus.S1	AUGUSTUS	transcript	21853098	21854994	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	stop_codon	21853095	21853097	.	-	0	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	CDS	21853098	21853132	1	-	2	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	exon	21853098	21853132	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	intron	21853133	21853294	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	CDS	21853295	21853353	0.98	-	1	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	exon	21853295	21853353	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	intron	21853354	21853699	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	CDS	21853700	21853785	1	-	0	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	exon	21853700	21853785	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	intron	21853786	21853898	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	CDS	21853899	21853955	0.8	-	0	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	exon	21853899	21853955	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	intron	21853956	21854276	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	CDS	21854277	21854413	0.66	-	2	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	exon	21854277	21854413	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	intron	21854414	21854518	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	CDS	21854519	21854737	0.7	-	2	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	exon	21854519	21854737	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	intron	21854738	21854870	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	CDS	21854871	21854994	0.57	-	0	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	exon	21854871	21854994	.	-	.	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
Ledus.S1	AUGUSTUS	start_codon	21854992	21854994	.	-	0	transcript_id "Ledus.S1G254300.t1"; gene_id "Ledus.S1G254300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg73.t1 is derived from g9486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	252596	253663	.	+	.	Ledus.C8G003300
Ledus.C8	AUGUSTUS	transcript	252596	253663	.	+	.	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	start_codon	252596	252598	.	+	0	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	CDS	252596	252914	1	+	0	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	exon	252596	252914	.	+	.	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	intron	252915	253012	.	+	.	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	CDS	253013	253165	1	+	2	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	exon	253013	253165	.	+	.	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	intron	253166	253286	.	+	.	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	CDS	253287	253384	1	+	2	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	exon	253287	253384	.	+	.	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	intron	253385	253465	.	+	.	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	CDS	253466	253663	1	+	0	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	exon	253466	253663	.	+	.	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
Ledus.C8	AUGUSTUS	stop_codon	253664	253666	.	+	0	transcript_id "Ledus.C8G003300.t1"; gene_id "Ledus.C8G003300"
# This transcript jg12743.t2 is derived from g6365.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12744.t1 is derived from g6366.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14186193	14187604	.	-	.	Ledus.S4G190000
Ledus.S4	AUGUSTUS	transcript	14186193	14187604	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	stop_codon	14186190	14186192	.	-	0	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	CDS	14186193	14186463	1	-	1	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	exon	14186193	14186463	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	intron	14186464	14186557	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	CDS	14186558	14186676	1	-	0	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	exon	14186558	14186676	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	intron	14186677	14186766	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	CDS	14186767	14186832	1	-	0	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	exon	14186767	14186832	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	intron	14186833	14186931	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	CDS	14186932	14186991	1	-	0	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	exon	14186932	14186991	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	intron	14186992	14187088	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	CDS	14187089	14187150	1	-	2	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	exon	14187089	14187150	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	intron	14187151	14187221	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	CDS	14187222	14187277	1	-	1	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	exon	14187222	14187277	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	intron	14187278	14187386	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	CDS	14187387	14187604	0.96	-	0	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	exon	14187387	14187604	.	-	.	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
Ledus.S4	AUGUSTUS	start_codon	14187602	14187604	.	-	0	transcript_id "Ledus.S4G190000.t1"; gene_id "Ledus.S4G190000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8149.t1 is derived from g12820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9388118	9388651	.	-	.	Ledus.S5G092700
Ledus.S5	AUGUSTUS	transcript	9388118	9388651	.	-	.	transcript_id "Ledus.S5G092700.t1"; gene_id "Ledus.S5G092700"
Ledus.S5	AUGUSTUS	stop_codon	9388115	9388117	.	-	0	transcript_id "Ledus.S5G092700.t1"; gene_id "Ledus.S5G092700"
Ledus.S5	AUGUSTUS	CDS	9388118	9388651	0.57	-	0	transcript_id "Ledus.S5G092700.t1"; gene_id "Ledus.S5G092700"
Ledus.S5	AUGUSTUS	exon	9388118	9388651	.	-	.	transcript_id "Ledus.S5G092700.t1"; gene_id "Ledus.S5G092700"
Ledus.S5	AUGUSTUS	start_codon	9388649	9388651	.	-	0	transcript_id "Ledus.S5G092700.t1"; gene_id "Ledus.S5G092700"
# This transcript jg12931.t2 is derived from g4423.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12932.t1 is derived from g4424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	405278	413140	.	-	.	Ledus.C9G004000
Ledus.C9	AUGUSTUS	transcript	405278	413140	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	stop_codon	405275	405277	.	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	405278	405355	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	405278	405355	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	405356	405455	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	405456	405578	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	405456	405578	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	405579	405666	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	405667	405759	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	405667	405759	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	405760	405841	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	405842	406057	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	405842	406057	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	406058	406127	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	406128	406214	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	406128	406214	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	406215	406311	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	406312	406372	1	-	1	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	406312	406372	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	406373	406482	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	406483	406553	0.97	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	406483	406553	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	406554	406651	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	406652	406786	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	406652	406786	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	406787	406877	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	406878	406988	0.98	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	406878	406988	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	406989	407133	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	407134	407217	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	407134	407217	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	407218	407347	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	407348	407404	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	407348	407404	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	407405	407498	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	407499	407588	0.99	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	407499	407588	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	407589	407696	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	407697	407837	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	407697	407837	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	407838	407928	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	407929	408033	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	407929	408033	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	408034	408164	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	408165	408317	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	408165	408317	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	408318	408487	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	408488	408589	0.98	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	408488	408589	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	408590	408696	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	408697	408849	0.89	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	408697	408849	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	408850	408964	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	408965	409142	0.97	-	1	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	408965	409142	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	409143	409304	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	409305	409384	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	409305	409384	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	409385	409509	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	409510	409575	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	409510	409575	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	409576	409674	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	409675	409732	1	-	1	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	409675	409732	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	409733	409826	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	409827	409927	0.99	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	409827	409927	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	409928	410049	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	410050	410136	0.93	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	410050	410136	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	410137	410257	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	410258	410380	0.87	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	410258	410380	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	410381	410494	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	410495	410574	1	-	2	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	410495	410574	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	410575	410737	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	410738	410926	1	-	2	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	410738	410926	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	410927	411049	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	411050	411500	0.89	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	411050	411500	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	411501	411600	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	411601	412031	0.99	-	2	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	411601	412031	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	412032	412115	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	412116	412266	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	412116	412266	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	412267	412341	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	412342	412383	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	412342	412383	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	412384	412453	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	412454	412501	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	412454	412501	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	412502	412582	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	412583	412770	1	-	2	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	412583	412770	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	412771	412855	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	412856	412961	1	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	412856	412961	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	412962	413023	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	413024	413140	0.93	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	413024	413140	.	-	.	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	start_codon	413138	413140	.	-	0	transcript_id "Ledus.C9G004000.t1"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	transcript	405278	413140	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	stop_codon	405275	405277	.	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	405278	405355	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	405278	405355	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	405356	405455	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	405456	405578	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	405456	405578	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	405579	405666	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	405667	405759	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	405667	405759	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	405760	405841	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	405842	406057	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	405842	406057	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	406058	406127	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	406128	406214	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	406128	406214	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	406215	406311	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	406312	406372	1	-	1	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	406312	406372	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	406373	406482	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	406483	406553	0.99	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	406483	406553	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	406554	406651	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	406652	406786	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	406652	406786	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	406787	406877	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	406878	406988	0.96	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	406878	406988	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	406989	407133	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	407134	407217	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	407134	407217	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	407218	407347	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	407348	407404	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	407348	407404	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	407405	407498	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	407499	407588	0.99	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	407499	407588	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	407589	407696	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	407697	407837	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	407697	407837	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	407838	407928	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	407929	408033	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	407929	408033	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	408034	408164	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	408165	408317	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	408165	408317	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	408318	408487	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	408488	408589	0.99	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	408488	408589	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	408590	408696	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	408697	408849	0.97	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	408697	408849	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	408850	408927	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	408928	408990	0.84	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	408928	408990	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	408991	409060	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	409061	409142	0.77	-	1	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	409061	409142	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	409143	409304	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	409305	409384	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	409305	409384	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	409385	409509	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	409510	409575	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	409510	409575	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	409576	409674	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	409675	409732	1	-	1	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	409675	409732	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	409733	409826	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	409827	409927	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	409827	409927	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	409928	410049	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	410050	410136	0.88	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	410050	410136	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	410137	410257	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	410258	410380	0.87	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	410258	410380	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	410381	410494	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	410495	410574	1	-	2	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	410495	410574	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	410575	410737	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	410738	410926	1	-	2	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	410738	410926	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	410927	411049	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	411050	411500	0.91	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	411050	411500	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	411501	411600	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	411601	412031	0.99	-	2	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	411601	412031	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	412032	412115	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	412116	412266	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	412116	412266	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	412267	412341	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	412342	412383	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	412342	412383	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	412384	412453	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	412454	412501	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	412454	412501	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	412502	412582	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	412583	412770	1	-	2	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	412583	412770	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	412771	412855	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	412856	412961	1	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	412856	412961	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	intron	412962	413023	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	CDS	413024	413140	0.89	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	exon	413024	413140	.	-	.	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
Ledus.C9	AUGUSTUS	start_codon	413138	413140	.	-	0	transcript_id "Ledus.C9G004000.t2"; gene_id "Ledus.C9G004000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1427.t1 is derived from g8288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10003180	10003914	.	-	.	Ledus.S2G130900
Ledus.S2	AUGUSTUS	transcript	10003180	10003914	.	-	.	transcript_id "Ledus.S2G130900.t1"; gene_id "Ledus.S2G130900"
Ledus.S2	AUGUSTUS	stop_codon	10003177	10003179	.	-	0	transcript_id "Ledus.S2G130900.t1"; gene_id "Ledus.S2G130900"
Ledus.S2	AUGUSTUS	CDS	10003180	10003914	0.73	-	0	transcript_id "Ledus.S2G130900.t1"; gene_id "Ledus.S2G130900"
Ledus.S2	AUGUSTUS	exon	10003180	10003914	.	-	.	transcript_id "Ledus.S2G130900.t1"; gene_id "Ledus.S2G130900"
Ledus.S2	AUGUSTUS	start_codon	10003912	10003914	.	-	0	transcript_id "Ledus.S2G130900.t1"; gene_id "Ledus.S2G130900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg361.t1 is derived from g7222.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1938675	1939777	.	-	.	Ledus.S2G024300
Ledus.S2	AUGUSTUS	transcript	1938675	1939777	.	-	.	transcript_id "Ledus.S2G024300.t1"; gene_id "Ledus.S2G024300"
Ledus.S2	AUGUSTUS	stop_codon	1938672	1938674	.	-	0	transcript_id "Ledus.S2G024300.t1"; gene_id "Ledus.S2G024300"
Ledus.S2	AUGUSTUS	CDS	1938675	1938816	0.87	-	1	transcript_id "Ledus.S2G024300.t1"; gene_id "Ledus.S2G024300"
Ledus.S2	AUGUSTUS	exon	1938675	1938816	.	-	.	transcript_id "Ledus.S2G024300.t1"; gene_id "Ledus.S2G024300"
Ledus.S2	AUGUSTUS	intron	1938817	1939154	.	-	.	transcript_id "Ledus.S2G024300.t1"; gene_id "Ledus.S2G024300"
Ledus.S2	AUGUSTUS	CDS	1939155	1939303	1	-	0	transcript_id "Ledus.S2G024300.t1"; gene_id "Ledus.S2G024300"
Ledus.S2	AUGUSTUS	exon	1939155	1939303	.	-	.	transcript_id "Ledus.S2G024300.t1"; gene_id "Ledus.S2G024300"
Ledus.S2	AUGUSTUS	intron	1939304	1939540	.	-	.	transcript_id "Ledus.S2G024300.t1"; gene_id "Ledus.S2G024300"
Ledus.S2	AUGUSTUS	CDS	1939541	1939777	0.89	-	0	transcript_id "Ledus.S2G024300.t1"; gene_id "Ledus.S2G024300"
Ledus.S2	AUGUSTUS	exon	1939541	1939777	.	-	.	transcript_id "Ledus.S2G024300.t1"; gene_id "Ledus.S2G024300"
Ledus.S2	AUGUSTUS	start_codon	1939775	1939777	.	-	0	transcript_id "Ledus.S2G024300.t1"; gene_id "Ledus.S2G024300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6961.t1 is derived from g6492.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	392310	394629	.	+	.	Ledus.C7G002200
Ledus.C7	AUGUSTUS	transcript	392310	394629	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	start_codon	392310	392312	.	+	0	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	CDS	392310	392409	0.7	+	0	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	exon	392310	392409	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	intron	392410	392504	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	CDS	392505	392597	1	+	2	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	exon	392505	392597	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	intron	392598	392695	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	CDS	392696	392839	1	+	2	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	exon	392696	392839	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	intron	392840	392932	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	CDS	392933	393023	1	+	2	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	exon	392933	393023	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	intron	393024	393117	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	CDS	393118	393211	0.99	+	1	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	exon	393118	393211	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	intron	393212	393326	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	CDS	393327	393452	0.99	+	0	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	exon	393327	393452	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	intron	393453	393595	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	CDS	393596	393655	1	+	0	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	exon	393596	393655	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	intron	393656	393868	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	CDS	393869	393993	0.99	+	0	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	exon	393869	393993	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	intron	393994	394111	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	CDS	394112	394199	0.99	+	1	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	exon	394112	394199	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	intron	394200	394304	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	CDS	394305	394353	0.99	+	0	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	exon	394305	394353	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	intron	394354	394483	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	CDS	394484	394629	0.55	+	2	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	exon	394484	394629	.	+	.	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
Ledus.C7	AUGUSTUS	stop_codon	394630	394632	.	+	0	transcript_id "Ledus.C7G002200.t1"; gene_id "Ledus.C7G002200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3802.t1 is derived from g1238.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12380011	12380643	.	-	.	Ledus.S1G122300
Ledus.S1	AUGUSTUS	transcript	12380011	12380643	.	-	.	transcript_id "Ledus.S1G122300.t1"; gene_id "Ledus.S1G122300"
Ledus.S1	AUGUSTUS	stop_codon	12380008	12380010	.	-	0	transcript_id "Ledus.S1G122300.t1"; gene_id "Ledus.S1G122300"
Ledus.S1	AUGUSTUS	CDS	12380011	12380181	0.42	-	0	transcript_id "Ledus.S1G122300.t1"; gene_id "Ledus.S1G122300"
Ledus.S1	AUGUSTUS	exon	12380011	12380181	.	-	.	transcript_id "Ledus.S1G122300.t1"; gene_id "Ledus.S1G122300"
Ledus.S1	AUGUSTUS	intron	12380182	12380310	.	-	.	transcript_id "Ledus.S1G122300.t1"; gene_id "Ledus.S1G122300"
Ledus.S1	AUGUSTUS	CDS	12380311	12380643	0.27	-	0	transcript_id "Ledus.S1G122300.t1"; gene_id "Ledus.S1G122300"
Ledus.S1	AUGUSTUS	exon	12380311	12380643	.	-	.	transcript_id "Ledus.S1G122300.t1"; gene_id "Ledus.S1G122300"
Ledus.S1	AUGUSTUS	start_codon	12380641	12380643	.	-	0	transcript_id "Ledus.S1G122300.t1"; gene_id "Ledus.S1G122300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3160.t1 is derived from g595.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6447145	6447486	.	+	.	Ledus.S1G058100
Ledus.S1	AUGUSTUS	transcript	6447145	6447486	.	+	.	transcript_id "Ledus.S1G058100.t1"; gene_id "Ledus.S1G058100"
Ledus.S1	AUGUSTUS	start_codon	6447145	6447147	.	+	0	transcript_id "Ledus.S1G058100.t1"; gene_id "Ledus.S1G058100"
Ledus.S1	AUGUSTUS	CDS	6447145	6447486	0.82	+	0	transcript_id "Ledus.S1G058100.t1"; gene_id "Ledus.S1G058100"
Ledus.S1	AUGUSTUS	exon	6447145	6447486	.	+	.	transcript_id "Ledus.S1G058100.t1"; gene_id "Ledus.S1G058100"
Ledus.S1	AUGUSTUS	stop_codon	6447487	6447489	.	+	0	transcript_id "Ledus.S1G058100.t1"; gene_id "Ledus.S1G058100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10543.t1 is derived from g11573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16043873	16046923	.	-	.	Ledus.S3G202000
Ledus.S3	AUGUSTUS	transcript	16043873	16046923	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	stop_codon	16043870	16043872	.	-	0	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	CDS	16043873	16043944	1	-	0	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	exon	16043873	16043944	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	intron	16043945	16044543	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	CDS	16044544	16044768	0.78	-	0	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	exon	16044544	16044768	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	intron	16044769	16044858	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	CDS	16044859	16044915	0.73	-	0	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	exon	16044859	16044915	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	intron	16044916	16045013	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	CDS	16045014	16045124	0.67	-	0	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	exon	16045014	16045124	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	intron	16045125	16045198	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	CDS	16045199	16045447	0.6	-	0	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	exon	16045199	16045447	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	intron	16045448	16045586	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	CDS	16045587	16046421	0.9	-	1	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	exon	16045587	16046421	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	intron	16046422	16046672	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	CDS	16046673	16046923	0.93	-	0	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	exon	16046673	16046923	.	-	.	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
Ledus.S3	AUGUSTUS	start_codon	16046921	16046923	.	-	0	transcript_id "Ledus.S3G202000.t1"; gene_id "Ledus.S3G202000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5182.t1 is derived from g2621.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22251017	22253120	.	+	.	Ledus.S1G260300
Ledus.S1	AUGUSTUS	transcript	22251017	22253120	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	start_codon	22251017	22251019	.	+	0	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	CDS	22251017	22251233	0.79	+	0	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	exon	22251017	22251233	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	intron	22251234	22251353	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	CDS	22251354	22251480	1	+	2	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	exon	22251354	22251480	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	intron	22251481	22251553	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	CDS	22251554	22251642	1	+	1	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	exon	22251554	22251642	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	intron	22251643	22251722	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	CDS	22251723	22251783	1	+	2	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	exon	22251723	22251783	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	intron	22251784	22251867	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	CDS	22251868	22251935	1	+	1	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	exon	22251868	22251935	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	intron	22251936	22252048	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	CDS	22252049	22252177	1	+	2	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	exon	22252049	22252177	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	intron	22252178	22252263	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	CDS	22252264	22252379	1	+	2	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	exon	22252264	22252379	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	intron	22252380	22252463	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	CDS	22252464	22252811	1	+	0	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	exon	22252464	22252811	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	intron	22252812	22252895	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	CDS	22252896	22253120	0.94	+	0	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	exon	22252896	22253120	.	+	.	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
Ledus.S1	AUGUSTUS	stop_codon	22253121	22253123	.	+	0	transcript_id "Ledus.S1G260300.t1"; gene_id "Ledus.S1G260300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3309.t1 is derived from g744.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7425037	7431133	.	+	.	Ledus.S1G073000
Ledus.S1	AUGUSTUS	transcript	7425037	7431133	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	start_codon	7425037	7425039	.	+	0	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7425037	7426202	0.38	+	0	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7425037	7426202	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	intron	7426203	7426305	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7426306	7426387	0.69	+	1	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7426306	7426387	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	intron	7426388	7426581	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7426582	7426785	1	+	0	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7426582	7426785	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	intron	7426786	7426873	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7426874	7426884	0.99	+	0	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7426874	7426884	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	intron	7426885	7427168	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7427169	7427328	0.66	+	1	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7427169	7427328	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	intron	7427329	7427476	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7427477	7427740	0.73	+	0	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7427477	7427740	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	intron	7427741	7427884	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7427885	7428007	0.79	+	0	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7427885	7428007	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	intron	7428008	7428112	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7428113	7428295	0.51	+	0	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7428113	7428295	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	intron	7428296	7428404	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7428405	7428486	1	+	0	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7428405	7428486	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	intron	7428487	7428572	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7428573	7429555	0.98	+	2	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7428573	7429555	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	intron	7429556	7429714	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7429715	7430228	0.83	+	0	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7429715	7430228	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	intron	7430229	7430330	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7430331	7430521	0.53	+	2	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7430331	7430521	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	intron	7430522	7430614	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	CDS	7430615	7431133	1	+	0	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	exon	7430615	7431133	.	+	.	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
Ledus.S1	AUGUSTUS	stop_codon	7431134	7431136	.	+	0	transcript_id "Ledus.S1G073000.t1"; gene_id "Ledus.S1G073000"
# This transcript jg12767.t2 is derived from g6389.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12768.t1 is derived from g6390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14373373	14375877	.	-	.	Ledus.S4G192400
Ledus.S4	AUGUSTUS	transcript	14373373	14375877	.	-	.	transcript_id "Ledus.S4G192400.t1"; gene_id "Ledus.S4G192400"
Ledus.S4	AUGUSTUS	stop_codon	14373370	14373372	.	-	0	transcript_id "Ledus.S4G192400.t1"; gene_id "Ledus.S4G192400"
Ledus.S4	AUGUSTUS	CDS	14373373	14375877	1	-	0	transcript_id "Ledus.S4G192400.t1"; gene_id "Ledus.S4G192400"
Ledus.S4	AUGUSTUS	exon	14373373	14375877	.	-	.	transcript_id "Ledus.S4G192400.t1"; gene_id "Ledus.S4G192400"
Ledus.S4	AUGUSTUS	start_codon	14375875	14375877	.	-	0	transcript_id "Ledus.S4G192400.t1"; gene_id "Ledus.S4G192400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6139.t1 is derived from g3582.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29168571	29170154	.	-	.	Ledus.S1G356000
Ledus.S1	AUGUSTUS	transcript	29168571	29170154	.	-	.	transcript_id "Ledus.S1G356000.t1"; gene_id "Ledus.S1G356000"
Ledus.S1	AUGUSTUS	stop_codon	29168568	29168570	.	-	0	transcript_id "Ledus.S1G356000.t1"; gene_id "Ledus.S1G356000"
Ledus.S1	AUGUSTUS	CDS	29168571	29170154	0.56	-	0	transcript_id "Ledus.S1G356000.t1"; gene_id "Ledus.S1G356000"
Ledus.S1	AUGUSTUS	exon	29168571	29170154	.	-	.	transcript_id "Ledus.S1G356000.t1"; gene_id "Ledus.S1G356000"
Ledus.S1	AUGUSTUS	start_codon	29170152	29170154	.	-	0	transcript_id "Ledus.S1G356000.t1"; gene_id "Ledus.S1G356000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6028.t1 is derived from g3471.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28524638	28525195	.	-	.	Ledus.S1G344900
Ledus.S1	AUGUSTUS	transcript	28524638	28525195	.	-	.	transcript_id "Ledus.S1G344900.t1"; gene_id "Ledus.S1G344900"
Ledus.S1	AUGUSTUS	stop_codon	28524635	28524637	.	-	0	transcript_id "Ledus.S1G344900.t1"; gene_id "Ledus.S1G344900"
Ledus.S1	AUGUSTUS	CDS	28524638	28525195	0.72	-	0	transcript_id "Ledus.S1G344900.t1"; gene_id "Ledus.S1G344900"
Ledus.S1	AUGUSTUS	exon	28524638	28525195	.	-	.	transcript_id "Ledus.S1G344900.t1"; gene_id "Ledus.S1G344900"
Ledus.S1	AUGUSTUS	start_codon	28525193	28525195	.	-	0	transcript_id "Ledus.S1G344900.t1"; gene_id "Ledus.S1G344900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8382.t1 is derived from g13054.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11392840	11393103	.	-	.	Ledus.S5G116000
Ledus.S5	AUGUSTUS	transcript	11392840	11393103	.	-	.	transcript_id "Ledus.S5G116000.t1"; gene_id "Ledus.S5G116000"
Ledus.S5	AUGUSTUS	stop_codon	11392837	11392839	.	-	0	transcript_id "Ledus.S5G116000.t1"; gene_id "Ledus.S5G116000"
Ledus.S5	AUGUSTUS	CDS	11392840	11393103	0.52	-	0	transcript_id "Ledus.S5G116000.t1"; gene_id "Ledus.S5G116000"
Ledus.S5	AUGUSTUS	exon	11392840	11393103	.	-	.	transcript_id "Ledus.S5G116000.t1"; gene_id "Ledus.S5G116000"
Ledus.S5	AUGUSTUS	start_codon	11393101	11393103	.	-	0	transcript_id "Ledus.S5G116000.t1"; gene_id "Ledus.S5G116000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10135.t1 is derived from g11165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12978571	12983823	.	+	.	Ledus.S3G161200
Ledus.S3	AUGUSTUS	transcript	12978571	12983823	.	+	.	transcript_id "Ledus.S3G161200.t1"; gene_id "Ledus.S3G161200"
Ledus.S3	AUGUSTUS	start_codon	12978571	12978573	.	+	0	transcript_id "Ledus.S3G161200.t1"; gene_id "Ledus.S3G161200"
Ledus.S3	AUGUSTUS	CDS	12978571	12978836	0.99	+	0	transcript_id "Ledus.S3G161200.t1"; gene_id "Ledus.S3G161200"
Ledus.S3	AUGUSTUS	exon	12978571	12978836	.	+	.	transcript_id "Ledus.S3G161200.t1"; gene_id "Ledus.S3G161200"
Ledus.S3	AUGUSTUS	intron	12978837	12979133	.	+	.	transcript_id "Ledus.S3G161200.t1"; gene_id "Ledus.S3G161200"
Ledus.S3	AUGUSTUS	CDS	12979134	12983823	1	+	1	transcript_id "Ledus.S3G161200.t1"; gene_id "Ledus.S3G161200"
Ledus.S3	AUGUSTUS	exon	12979134	12983823	.	+	.	transcript_id "Ledus.S3G161200.t1"; gene_id "Ledus.S3G161200"
Ledus.S3	AUGUSTUS	stop_codon	12983824	12983826	.	+	0	transcript_id "Ledus.S3G161200.t1"; gene_id "Ledus.S3G161200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg691.t1 is derived from g7552.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4200690	4203187	.	-	.	Ledus.S2G057300
Ledus.S2	AUGUSTUS	transcript	4200690	4203187	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	stop_codon	4200687	4200689	.	-	0	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	CDS	4200690	4200754	1	-	2	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	exon	4200690	4200754	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	intron	4200755	4201100	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	CDS	4201101	4201152	0.97	-	0	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	exon	4201101	4201152	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	intron	4201153	4201338	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	CDS	4201339	4201430	0.51	-	2	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	exon	4201339	4201430	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	intron	4201431	4201530	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	CDS	4201531	4201568	1	-	1	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	exon	4201531	4201568	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	intron	4201569	4201718	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	CDS	4201719	4201933	0.99	-	0	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	exon	4201719	4201933	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	intron	4201934	4202043	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	CDS	4202044	4202536	0.87	-	1	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	exon	4202044	4202536	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	intron	4202537	4202619	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	CDS	4202620	4202742	0.88	-	1	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	exon	4202620	4202742	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	intron	4202743	4202902	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	CDS	4202903	4202929	1	-	1	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	exon	4202903	4202929	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	intron	4202930	4203122	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	CDS	4203123	4203187	1	-	0	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	exon	4203123	4203187	.	-	.	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
Ledus.S2	AUGUSTUS	start_codon	4203185	4203187	.	-	0	transcript_id "Ledus.S2G057300.t1"; gene_id "Ledus.S2G057300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4473.t1 is derived from g1909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17238016	17238492	.	-	.	Ledus.S1G189400
Ledus.S1	AUGUSTUS	transcript	17238016	17238492	.	-	.	transcript_id "Ledus.S1G189400.t1"; gene_id "Ledus.S1G189400"
Ledus.S1	AUGUSTUS	stop_codon	17238013	17238015	.	-	0	transcript_id "Ledus.S1G189400.t1"; gene_id "Ledus.S1G189400"
Ledus.S1	AUGUSTUS	CDS	17238016	17238492	1	-	0	transcript_id "Ledus.S1G189400.t1"; gene_id "Ledus.S1G189400"
Ledus.S1	AUGUSTUS	exon	17238016	17238492	.	-	.	transcript_id "Ledus.S1G189400.t1"; gene_id "Ledus.S1G189400"
Ledus.S1	AUGUSTUS	start_codon	17238490	17238492	.	-	0	transcript_id "Ledus.S1G189400.t1"; gene_id "Ledus.S1G189400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5904.t1 is derived from g3347.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27701873	27702284	.	-	.	Ledus.S1G332500
Ledus.S1	AUGUSTUS	transcript	27701873	27702284	.	-	.	transcript_id "Ledus.S1G332500.t1"; gene_id "Ledus.S1G332500"
Ledus.S1	AUGUSTUS	stop_codon	27701870	27701872	.	-	0	transcript_id "Ledus.S1G332500.t1"; gene_id "Ledus.S1G332500"
Ledus.S1	AUGUSTUS	CDS	27701873	27702090	0.56	-	2	transcript_id "Ledus.S1G332500.t1"; gene_id "Ledus.S1G332500"
Ledus.S1	AUGUSTUS	exon	27701873	27702090	.	-	.	transcript_id "Ledus.S1G332500.t1"; gene_id "Ledus.S1G332500"
Ledus.S1	AUGUSTUS	intron	27702091	27702235	.	-	.	transcript_id "Ledus.S1G332500.t1"; gene_id "Ledus.S1G332500"
Ledus.S1	AUGUSTUS	CDS	27702236	27702284	1	-	0	transcript_id "Ledus.S1G332500.t1"; gene_id "Ledus.S1G332500"
Ledus.S1	AUGUSTUS	exon	27702236	27702284	.	-	.	transcript_id "Ledus.S1G332500.t1"; gene_id "Ledus.S1G332500"
Ledus.S1	AUGUSTUS	start_codon	27702282	27702284	.	-	0	transcript_id "Ledus.S1G332500.t1"; gene_id "Ledus.S1G332500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9185.t1 is derived from g10215.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5278056	5280287	.	-	.	Ledus.S3G066200
Ledus.S3	AUGUSTUS	transcript	5278056	5280287	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	stop_codon	5278053	5278055	.	-	0	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	CDS	5278056	5278160	0.93	-	0	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	exon	5278056	5278160	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	intron	5278161	5278275	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	CDS	5278276	5278538	0.88	-	2	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	exon	5278276	5278538	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	intron	5278539	5278786	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	CDS	5278787	5278903	1	-	2	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	exon	5278787	5278903	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	intron	5278904	5279086	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	CDS	5279087	5279173	1	-	2	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	exon	5279087	5279173	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	intron	5279174	5279300	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	CDS	5279301	5279439	0.89	-	0	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	exon	5279301	5279439	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	intron	5279440	5279545	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	CDS	5279546	5279631	0.95	-	2	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	exon	5279546	5279631	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	intron	5279632	5279829	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	CDS	5279830	5280042	0.97	-	2	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	exon	5279830	5280042	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	intron	5280043	5280109	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	CDS	5280110	5280287	0.58	-	0	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	exon	5280110	5280287	.	-	.	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
Ledus.S3	AUGUSTUS	start_codon	5280285	5280287	.	-	0	transcript_id "Ledus.S3G066200.t1"; gene_id "Ledus.S3G066200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9360.t1 is derived from g10390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6360176	6362150	.	+	.	Ledus.S3G083700
Ledus.S3	AUGUSTUS	transcript	6360176	6362150	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	start_codon	6360176	6360178	.	+	0	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	CDS	6360176	6360187	1	+	0	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	exon	6360176	6360187	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	intron	6360188	6360313	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	CDS	6360314	6360823	1	+	0	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	exon	6360314	6360823	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	intron	6360824	6360922	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	CDS	6360923	6361096	1	+	0	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	exon	6360923	6361096	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	intron	6361097	6361201	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	CDS	6361202	6361252	1	+	0	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	exon	6361202	6361252	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	intron	6361253	6361391	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	CDS	6361392	6361588	1	+	0	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	exon	6361392	6361588	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	intron	6361589	6361699	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	CDS	6361700	6361787	0.96	+	1	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	exon	6361700	6361787	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	intron	6361788	6361901	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	CDS	6361902	6362150	1	+	0	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	exon	6361902	6362150	.	+	.	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
Ledus.S3	AUGUSTUS	stop_codon	6362151	6362153	.	+	0	transcript_id "Ledus.S3G083700.t1"; gene_id "Ledus.S3G083700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4302.t1 is derived from g1738.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16119038	16120482	.	+	.	Ledus.S1G172300
Ledus.S1	AUGUSTUS	transcript	16119038	16120482	.	+	.	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	start_codon	16119038	16119040	.	+	0	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	CDS	16119038	16119143	0.84	+	0	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	exon	16119038	16119143	.	+	.	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	intron	16119144	16119371	.	+	.	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	CDS	16119372	16119393	0.83	+	2	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	exon	16119372	16119393	.	+	.	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	intron	16119394	16119585	.	+	.	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	CDS	16119586	16119634	0.48	+	1	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	exon	16119586	16119634	.	+	.	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	intron	16119635	16119765	.	+	.	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	CDS	16119766	16120482	0.45	+	0	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	exon	16119766	16120482	.	+	.	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
Ledus.S1	AUGUSTUS	stop_codon	16120483	16120485	.	+	0	transcript_id "Ledus.S1G172300.t1"; gene_id "Ledus.S1G172300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12342.t1 is derived from g5963.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11322913	11325006	.	+	.	Ledus.S4G149800
Ledus.S4	AUGUSTUS	transcript	11322913	11325006	.	+	.	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	start_codon	11322913	11322915	.	+	0	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	CDS	11322913	11324173	0.83	+	0	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	exon	11322913	11324173	.	+	.	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	intron	11324174	11324636	.	+	.	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	CDS	11324637	11324649	0.97	+	2	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	exon	11324637	11324649	.	+	.	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	intron	11324650	11324720	.	+	.	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	CDS	11324721	11324726	0.97	+	1	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	exon	11324721	11324726	.	+	.	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	intron	11324727	11324960	.	+	.	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	CDS	11324961	11325006	0.97	+	1	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	exon	11324961	11325006	.	+	.	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
Ledus.S4	AUGUSTUS	stop_codon	11325007	11325009	.	+	0	transcript_id "Ledus.S4G149800.t1"; gene_id "Ledus.S4G149800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11756.t1 is derived from g5375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6576142	6577254	.	-	.	Ledus.S4G091200
Ledus.S4	AUGUSTUS	transcript	6576142	6577254	.	-	.	transcript_id "Ledus.S4G091200.t1"; gene_id "Ledus.S4G091200"
Ledus.S4	AUGUSTUS	stop_codon	6576139	6576141	.	-	0	transcript_id "Ledus.S4G091200.t1"; gene_id "Ledus.S4G091200"
Ledus.S4	AUGUSTUS	CDS	6576142	6576504	0.56	-	0	transcript_id "Ledus.S4G091200.t1"; gene_id "Ledus.S4G091200"
Ledus.S4	AUGUSTUS	exon	6576142	6576504	.	-	.	transcript_id "Ledus.S4G091200.t1"; gene_id "Ledus.S4G091200"
Ledus.S4	AUGUSTUS	intron	6576505	6576588	.	-	.	transcript_id "Ledus.S4G091200.t1"; gene_id "Ledus.S4G091200"
Ledus.S4	AUGUSTUS	CDS	6576589	6577254	0.58	-	0	transcript_id "Ledus.S4G091200.t1"; gene_id "Ledus.S4G091200"
Ledus.S4	AUGUSTUS	exon	6576589	6577254	.	-	.	transcript_id "Ledus.S4G091200.t1"; gene_id "Ledus.S4G091200"
Ledus.S4	AUGUSTUS	start_codon	6577252	6577254	.	-	0	transcript_id "Ledus.S4G091200.t1"; gene_id "Ledus.S4G091200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9782.t1 is derived from g10812.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9770485	9772139	.	+	.	Ledus.S3G125900
Ledus.S3	AUGUSTUS	transcript	9770485	9772139	.	+	.	transcript_id "Ledus.S3G125900.t1"; gene_id "Ledus.S3G125900"
Ledus.S3	AUGUSTUS	start_codon	9770485	9770487	.	+	0	transcript_id "Ledus.S3G125900.t1"; gene_id "Ledus.S3G125900"
Ledus.S3	AUGUSTUS	CDS	9770485	9770878	0.76	+	0	transcript_id "Ledus.S3G125900.t1"; gene_id "Ledus.S3G125900"
Ledus.S3	AUGUSTUS	exon	9770485	9770878	.	+	.	transcript_id "Ledus.S3G125900.t1"; gene_id "Ledus.S3G125900"
Ledus.S3	AUGUSTUS	intron	9770879	9771112	.	+	.	transcript_id "Ledus.S3G125900.t1"; gene_id "Ledus.S3G125900"
Ledus.S3	AUGUSTUS	CDS	9771113	9771382	0.99	+	2	transcript_id "Ledus.S3G125900.t1"; gene_id "Ledus.S3G125900"
Ledus.S3	AUGUSTUS	exon	9771113	9771382	.	+	.	transcript_id "Ledus.S3G125900.t1"; gene_id "Ledus.S3G125900"
Ledus.S3	AUGUSTUS	intron	9771383	9771471	.	+	.	transcript_id "Ledus.S3G125900.t1"; gene_id "Ledus.S3G125900"
Ledus.S3	AUGUSTUS	CDS	9771472	9772139	0.99	+	2	transcript_id "Ledus.S3G125900.t1"; gene_id "Ledus.S3G125900"
Ledus.S3	AUGUSTUS	exon	9771472	9772139	.	+	.	transcript_id "Ledus.S3G125900.t1"; gene_id "Ledus.S3G125900"
Ledus.S3	AUGUSTUS	stop_codon	9772140	9772142	.	+	0	transcript_id "Ledus.S3G125900.t1"; gene_id "Ledus.S3G125900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8079.t1 is derived from g12750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9065755	9067821	.	-	.	Ledus.S5G085700
Ledus.S5	AUGUSTUS	transcript	9065755	9067821	.	-	.	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	stop_codon	9065752	9065754	.	-	0	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	CDS	9065755	9066545	1	-	2	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	exon	9065755	9066545	.	-	.	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	intron	9066546	9066641	.	-	.	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	CDS	9066642	9067310	0.96	-	2	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	exon	9066642	9067310	.	-	.	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	intron	9067311	9067472	.	-	.	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	CDS	9067473	9067594	0.8	-	1	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	exon	9067473	9067594	.	-	.	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	intron	9067595	9067732	.	-	.	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	CDS	9067733	9067821	0.51	-	0	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	exon	9067733	9067821	.	-	.	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
Ledus.S5	AUGUSTUS	start_codon	9067819	9067821	.	-	0	transcript_id "Ledus.S5G085700.t1"; gene_id "Ledus.S5G085700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9777.t1 is derived from g10807.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9753726	9755843	.	-	.	Ledus.S3G125400
Ledus.S3	AUGUSTUS	transcript	9753726	9755843	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	stop_codon	9753723	9753725	.	-	0	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	CDS	9753726	9753857	1	-	0	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	exon	9753726	9753857	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	intron	9753858	9753942	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	CDS	9753943	9754053	1	-	0	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	exon	9753943	9754053	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	intron	9754054	9754131	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	CDS	9754132	9754209	1	-	0	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	exon	9754132	9754209	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	intron	9754210	9754288	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	CDS	9754289	9754349	1	-	1	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	exon	9754289	9754349	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	intron	9754350	9754435	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	CDS	9754436	9754524	1	-	0	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	exon	9754436	9754524	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	intron	9754525	9754605	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	CDS	9754606	9754656	1	-	0	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	exon	9754606	9754656	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	intron	9754657	9754738	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	CDS	9754739	9754858	1	-	0	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	exon	9754739	9754858	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	intron	9754859	9754928	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	CDS	9754929	9755044	1	-	2	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	exon	9754929	9755044	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	intron	9755045	9755136	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	CDS	9755137	9755154	1	-	2	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	exon	9755137	9755154	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	intron	9755155	9755283	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	CDS	9755284	9755332	1	-	0	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	exon	9755284	9755332	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	intron	9755333	9755489	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	CDS	9755490	9755630	1	-	0	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	exon	9755490	9755630	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	intron	9755631	9755723	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	CDS	9755724	9755843	1	-	0	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	exon	9755724	9755843	.	-	.	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
Ledus.S3	AUGUSTUS	start_codon	9755841	9755843	.	-	0	transcript_id "Ledus.S3G125400.t1"; gene_id "Ledus.S3G125400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5019.t1 is derived from g2457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21164421	21174804	.	+	.	Ledus.S1G244000
Ledus.S1	AUGUSTUS	transcript	21164421	21174094	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	start_codon	21164421	21164423	.	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21164421	21164537	0.83	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21164421	21164537	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21164538	21165047	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21165048	21165266	0.95	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21165048	21165266	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21165267	21165385	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21165386	21165567	0.96	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21165386	21165567	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21165568	21165706	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21165707	21165833	1	+	1	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21165707	21165833	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21165834	21165920	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21165921	21166142	1	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21165921	21166142	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21166143	21166381	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21166382	21166468	0.91	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21166382	21166468	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21166469	21166569	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21166570	21166729	0.93	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21166570	21166729	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21166730	21166852	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21166853	21166998	1	+	2	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21166853	21166998	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21166999	21167102	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21167103	21167251	0.99	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21167103	21167251	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21167252	21167357	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21167358	21167507	1	+	1	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21167358	21167507	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21167508	21167593	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21167594	21167642	1	+	1	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21167594	21167642	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21167643	21167810	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21167811	21168002	0.64	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21167811	21168002	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21168003	21168143	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21168144	21168329	0.97	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21168144	21168329	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21168330	21168438	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21168439	21168593	0.99	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21168439	21168593	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21168594	21168693	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21168694	21168820	1	+	1	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21168694	21168820	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21168821	21168952	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21168953	21169102	1	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21168953	21169102	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21169103	21169215	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21169216	21169266	1	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21169216	21169266	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21169267	21169448	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21169449	21169591	1	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21169449	21169591	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21169592	21169743	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21169744	21169861	1	+	1	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21169744	21169861	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21169862	21170073	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21170074	21170208	1	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21170074	21170208	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21170209	21170295	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21170296	21170507	1	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21170296	21170507	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21170508	21170761	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21170762	21170918	1	+	1	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21170762	21170918	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21170919	21171046	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21171047	21171190	1	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21171047	21171190	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21171191	21171330	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21171331	21171414	1	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21171331	21171414	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21171415	21171629	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21171630	21172127	1	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21171630	21172127	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21172128	21172226	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21172227	21172379	0.98	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21172227	21172379	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21172380	21172496	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21172497	21172585	1	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21172497	21172585	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21172586	21172743	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21172744	21172795	1	+	1	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21172744	21172795	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21172796	21172882	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21172883	21172969	1	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21172883	21172969	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21172970	21173059	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21173060	21173106	1	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21173060	21173106	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21173107	21173202	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21173203	21173280	1	+	1	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21173203	21173280	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21173281	21173434	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21173435	21173730	1	+	1	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21173435	21173730	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21173731	21173822	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21173823	21173965	1	+	2	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21173823	21173965	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21173966	21174061	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21174062	21174094	0.82	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21174062	21174094	.	+	.	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	stop_codon	21174095	21174097	.	+	0	transcript_id "Ledus.S1G244000.t1"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	transcript	21164421	21174804	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	start_codon	21164421	21164423	.	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21164421	21164537	0.88	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21164421	21164537	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21164538	21165047	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21165048	21165266	0.99	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21165048	21165266	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21165267	21165385	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21165386	21165567	0.95	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21165386	21165567	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21165568	21165706	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21165707	21165833	1	+	1	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21165707	21165833	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21165834	21165920	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21165921	21166142	0.99	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21165921	21166142	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21166143	21166381	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21166382	21166468	0.9	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21166382	21166468	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21166469	21166569	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21166570	21166729	0.92	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21166570	21166729	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21166730	21166852	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21166853	21166998	0.98	+	2	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21166853	21166998	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21166999	21167102	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21167103	21167251	0.95	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21167103	21167251	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21167252	21167357	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21167358	21167507	0.99	+	1	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21167358	21167507	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21167508	21167593	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21167594	21167642	1	+	1	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21167594	21167642	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21167643	21167810	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21167811	21168002	0.66	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21167811	21168002	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21168003	21168143	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21168144	21168329	0.98	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21168144	21168329	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21168330	21168438	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21168439	21168593	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21168439	21168593	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21168594	21168693	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21168694	21168820	1	+	1	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21168694	21168820	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21168821	21168952	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21168953	21169102	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21168953	21169102	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21169103	21169215	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21169216	21169266	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21169216	21169266	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21169267	21169448	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21169449	21169591	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21169449	21169591	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21169592	21169743	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21169744	21169861	1	+	1	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21169744	21169861	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21169862	21170073	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21170074	21170208	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21170074	21170208	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21170209	21170295	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21170296	21170507	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21170296	21170507	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21170508	21170761	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21170762	21170918	1	+	1	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21170762	21170918	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21170919	21171046	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21171047	21171190	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21171047	21171190	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21171191	21171330	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21171331	21171414	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21171331	21171414	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21171415	21171629	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21171630	21172127	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21171630	21172127	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21172128	21172226	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21172227	21172379	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21172227	21172379	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21172380	21172496	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21172497	21172585	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21172497	21172585	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21172586	21172743	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21172744	21172795	1	+	1	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21172744	21172795	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21172796	21172882	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21172883	21172969	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21172883	21172969	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21172970	21173059	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21173060	21173106	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21173060	21173106	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21173107	21173202	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21173203	21173280	1	+	1	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21173203	21173280	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21173281	21173434	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21173435	21173730	1	+	1	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21173435	21173730	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21173731	21173822	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21173823	21173965	0.98	+	2	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21173823	21173965	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21173966	21174134	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21174135	21174139	0.42	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21174135	21174139	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21174140	21174502	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21174503	21174650	0.59	+	1	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21174503	21174650	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	intron	21174651	21174747	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	CDS	21174748	21174804	1	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	exon	21174748	21174804	.	+	.	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
Ledus.S1	AUGUSTUS	stop_codon	21174805	21174807	.	+	0	transcript_id "Ledus.S1G244000.t2"; gene_id "Ledus.S1G244000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8051.t1 is derived from g12722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8834259	8837187	.	+	.	Ledus.S5G082900
Ledus.S5	AUGUSTUS	transcript	8834259	8837187	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	start_codon	8834259	8834261	.	+	0	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	CDS	8834259	8834609	0.73	+	0	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	exon	8834259	8834609	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	intron	8834610	8834728	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	CDS	8834729	8835130	0.82	+	0	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	exon	8834729	8835130	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	intron	8835131	8835269	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	CDS	8835270	8835587	1	+	0	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	exon	8835270	8835587	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	intron	8835588	8835733	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	CDS	8835734	8835817	1	+	0	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	exon	8835734	8835817	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	intron	8835818	8835950	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	CDS	8835951	8836127	1	+	0	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	exon	8835951	8836127	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	intron	8836128	8836333	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	CDS	8836334	8836797	1	+	0	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	exon	8836334	8836797	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	intron	8836798	8836922	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	CDS	8836923	8837187	0.43	+	1	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	exon	8836923	8837187	.	+	.	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
Ledus.S5	AUGUSTUS	stop_codon	8837188	8837190	.	+	0	transcript_id "Ledus.S5G082900.t1"; gene_id "Ledus.S5G082900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2523.t1 is derived from g9386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18575423	18581145	.	-	.	Ledus.S2G240500
Ledus.S2	AUGUSTUS	transcript	18575423	18581145	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	stop_codon	18575420	18575422	.	-	0	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	CDS	18575423	18575467	0.86	-	0	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	exon	18575423	18575467	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	intron	18575468	18575567	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	CDS	18575568	18575678	1	-	0	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	exon	18575568	18575678	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	intron	18575679	18576043	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	CDS	18576044	18577870	0.99	-	0	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	exon	18576044	18577870	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	intron	18577871	18578092	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	CDS	18578093	18578719	1	-	0	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	exon	18578093	18578719	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	intron	18578720	18579076	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	CDS	18579077	18579346	1	-	0	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	exon	18579077	18579346	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	intron	18579347	18579592	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	CDS	18579593	18579694	1	-	0	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	exon	18579593	18579694	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	intron	18579695	18580875	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	CDS	18580876	18581145	0.77	-	0	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	exon	18580876	18581145	.	-	.	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
Ledus.S2	AUGUSTUS	start_codon	18581143	18581145	.	-	0	transcript_id "Ledus.S2G240500.t1"; gene_id "Ledus.S2G240500"
# This transcript jg11535.t2 is derived from g5153.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg11535.t3 is derived from g5153.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11536.t1 is derived from g5154.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5170837	5174996	.	+	.	Ledus.S4G069200
Ledus.S4	AUGUSTUS	transcript	5170837	5174996	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	start_codon	5170837	5170839	.	+	0	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	CDS	5170837	5171343	0.96	+	0	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	exon	5170837	5171343	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	intron	5171344	5171543	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	CDS	5171544	5171684	0.83	+	0	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	exon	5171544	5171684	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	intron	5171685	5171791	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	CDS	5171792	5172068	0.28	+	0	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	exon	5171792	5172068	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	intron	5172069	5172202	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	CDS	5172203	5173130	0.49	+	2	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	exon	5172203	5173130	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	intron	5173131	5173330	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	CDS	5173331	5173679	0.96	+	1	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	exon	5173331	5173679	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	intron	5173680	5173781	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	CDS	5173782	5173958	0.56	+	0	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	exon	5173782	5173958	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	intron	5173959	5174063	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	CDS	5174064	5174996	1	+	0	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	exon	5174064	5174996	.	+	.	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
Ledus.S4	AUGUSTUS	stop_codon	5174997	5174999	.	+	0	transcript_id "Ledus.S4G069200.t1"; gene_id "Ledus.S4G069200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7907.t1 is derived from g12578.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7769289	7772618	.	+	.	Ledus.S5G068500
Ledus.S5	AUGUSTUS	transcript	7769289	7772618	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	start_codon	7769289	7769291	.	+	0	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7769289	7769588	0.85	+	0	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7769289	7769588	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	intron	7769589	7769675	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7769676	7769785	1	+	0	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7769676	7769785	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	intron	7769786	7769953	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7769954	7770033	1	+	1	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7769954	7770033	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	intron	7770034	7770458	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7770459	7770514	1	+	2	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7770459	7770514	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	intron	7770515	7770603	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7770604	7770706	1	+	0	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7770604	7770706	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	intron	7770707	7770864	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7770865	7770920	0.94	+	2	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7770865	7770920	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	intron	7770921	7771041	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7771042	7771137	0.99	+	0	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7771042	7771137	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	intron	7771138	7771242	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7771243	7771380	1	+	0	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7771243	7771380	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	intron	7771381	7771472	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7771473	7771535	1	+	0	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7771473	7771535	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	intron	7771536	7771616	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7771617	7771695	0.97	+	0	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7771617	7771695	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	intron	7771696	7771987	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7771988	7772035	0.52	+	2	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7771988	7772035	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	intron	7772036	7772175	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7772176	7772297	0.51	+	2	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7772176	7772297	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	intron	7772298	7772588	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	CDS	7772589	7772618	0.48	+	0	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	exon	7772589	7772618	.	+	.	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
Ledus.S5	AUGUSTUS	stop_codon	7772619	7772621	.	+	0	transcript_id "Ledus.S5G068500.t1"; gene_id "Ledus.S5G068500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10058.t1 is derived from g11088.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12312542	12315914	.	-	.	Ledus.S3G153500
Ledus.S3	AUGUSTUS	transcript	12312542	12315914	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	stop_codon	12312539	12312541	.	-	0	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	CDS	12312542	12312567	0.98	-	2	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	exon	12312542	12312567	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	intron	12312568	12312667	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	CDS	12312668	12313519	0.98	-	2	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	exon	12312668	12313519	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	intron	12313520	12313613	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	CDS	12313614	12313868	1	-	2	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	exon	12313614	12313868	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	intron	12313869	12313960	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	CDS	12313961	12314075	1	-	0	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	exon	12313961	12314075	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	intron	12314076	12314153	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	CDS	12314154	12314206	1	-	2	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	exon	12314154	12314206	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	intron	12314207	12314284	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	CDS	12314285	12314545	1	-	2	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	exon	12314285	12314545	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	intron	12314546	12314626	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	CDS	12314627	12314677	0.99	-	2	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	exon	12314627	12314677	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	intron	12314678	12314782	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	CDS	12314783	12315028	1	-	2	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	exon	12314783	12315028	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	intron	12315029	12315101	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	CDS	12315102	12315336	1	-	0	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	exon	12315102	12315336	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	intron	12315337	12315425	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	CDS	12315426	12315560	0.9	-	0	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	exon	12315426	12315560	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	intron	12315561	12315698	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	CDS	12315699	12315914	0.77	-	0	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	exon	12315699	12315914	.	-	.	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
Ledus.S3	AUGUSTUS	start_codon	12315912	12315914	.	-	0	transcript_id "Ledus.S3G153500.t1"; gene_id "Ledus.S3G153500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3180.t1 is derived from g615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6602256	6604984	.	+	.	Ledus.S1G060100
Ledus.S1	AUGUSTUS	transcript	6602256	6604984	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	start_codon	6602256	6602258	.	+	0	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6602256	6602375	0.64	+	0	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6602256	6602375	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	intron	6602376	6602454	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6602455	6602526	1	+	0	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6602455	6602526	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	intron	6602527	6602665	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6602666	6602743	1	+	0	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6602666	6602743	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	intron	6602744	6602881	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6602882	6602950	1	+	0	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6602882	6602950	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	intron	6602951	6603243	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6603244	6603277	1	+	0	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6603244	6603277	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	intron	6603278	6603395	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6603396	6603518	1	+	2	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6603396	6603518	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	intron	6603519	6603764	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6603765	6603833	1	+	2	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6603765	6603833	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	intron	6603834	6603938	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6603939	6604032	0.9	+	2	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6603939	6604032	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	intron	6604033	6604223	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6604224	6604269	1	+	1	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6604224	6604269	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	intron	6604270	6604361	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6604362	6604429	1	+	0	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6604362	6604429	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	intron	6604430	6604586	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6604587	6604638	1	+	1	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6604587	6604638	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	intron	6604639	6604747	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6604748	6604813	1	+	0	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6604748	6604813	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	intron	6604814	6604900	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	CDS	6604901	6604984	1	+	0	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	exon	6604901	6604984	.	+	.	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
Ledus.S1	AUGUSTUS	stop_codon	6604985	6604987	.	+	0	transcript_id "Ledus.S1G060100.t1"; gene_id "Ledus.S1G060100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11154.t1 is derived from g4772.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2207617	2209187	.	+	.	Ledus.S4G031000
Ledus.S4	AUGUSTUS	transcript	2207617	2209187	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	start_codon	2207617	2207619	.	+	0	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	CDS	2207617	2208011	0.99	+	0	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	exon	2207617	2208011	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	intron	2208012	2208092	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	CDS	2208093	2208248	1	+	1	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	exon	2208093	2208248	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	intron	2208249	2208324	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	CDS	2208325	2208407	1	+	1	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	exon	2208325	2208407	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	intron	2208408	2208498	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	CDS	2208499	2208598	1	+	2	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	exon	2208499	2208598	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	intron	2208599	2208675	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	CDS	2208676	2208789	1	+	1	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	exon	2208676	2208789	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	intron	2208790	2208874	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	CDS	2208875	2209017	1	+	1	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	exon	2208875	2209017	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	intron	2209018	2209101	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	CDS	2209102	2209187	1	+	2	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	exon	2209102	2209187	.	+	.	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
Ledus.S4	AUGUSTUS	stop_codon	2209188	2209190	.	+	0	transcript_id "Ledus.S4G031000.t1"; gene_id "Ledus.S4G031000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8683.t1 is derived from g9713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1343037	1347082	.	+	.	Ledus.S3G016000
Ledus.S3	AUGUSTUS	transcript	1343037	1347082	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	start_codon	1343037	1343039	.	+	0	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1343037	1343598	0.97	+	0	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1343037	1343598	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	intron	1343599	1343776	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1343777	1343889	1	+	2	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1343777	1343889	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	intron	1343890	1344045	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1344046	1344102	1	+	0	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1344046	1344102	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	intron	1344103	1344231	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1344232	1344327	1	+	0	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1344232	1344327	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	intron	1344328	1344509	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1344510	1344580	1	+	0	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1344510	1344580	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	intron	1344581	1344737	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1344738	1344780	1	+	1	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1344738	1344780	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	intron	1344781	1344963	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1344964	1345044	1	+	0	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1344964	1345044	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	intron	1345045	1345151	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1345152	1345211	0.61	+	0	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1345152	1345211	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	intron	1345212	1345402	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1345403	1345474	1	+	0	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1345403	1345474	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	intron	1345475	1345717	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1345718	1345815	0.98	+	0	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1345718	1345815	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	intron	1345816	1345929	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1345930	1345978	0.62	+	1	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1345930	1345978	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	intron	1345979	1346142	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1346143	1346187	1	+	0	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1346143	1346187	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	intron	1346188	1346275	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	CDS	1346276	1347082	0.73	+	0	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	exon	1346276	1347082	.	+	.	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
Ledus.S3	AUGUSTUS	stop_codon	1347083	1347085	.	+	0	transcript_id "Ledus.S3G016000.t1"; gene_id "Ledus.S3G016000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11089.t1 is derived from g4707.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1710230	1712436	.	-	.	Ledus.S4G024500
Ledus.S4	AUGUSTUS	transcript	1710230	1712436	.	-	.	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	stop_codon	1710227	1710229	.	-	0	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	CDS	1710230	1710256	0.78	-	0	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	exon	1710230	1710256	.	-	.	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	intron	1710257	1710384	.	-	.	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	CDS	1710385	1710444	0.79	-	0	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	exon	1710385	1710444	.	-	.	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	intron	1710445	1710563	.	-	.	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	CDS	1710564	1711079	0.95	-	0	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	exon	1710564	1711079	.	-	.	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	intron	1711080	1711163	.	-	.	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	CDS	1711164	1711649	0.98	-	0	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	exon	1711164	1711649	.	-	.	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	intron	1711650	1711725	.	-	.	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	CDS	1711726	1712436	0.31	-	0	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	exon	1711726	1712436	.	-	.	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
Ledus.S4	AUGUSTUS	start_codon	1712434	1712436	.	-	0	transcript_id "Ledus.S4G024500.t1"; gene_id "Ledus.S4G024500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13072.t1 is derived from g6882.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5006268	5006477	.	+	.	Ledus.S6G013400
Ledus.S6	AUGUSTUS	transcript	5006268	5006477	.	+	.	transcript_id "Ledus.S6G013400.t1"; gene_id "Ledus.S6G013400"
Ledus.S6	AUGUSTUS	start_codon	5006268	5006270	.	+	0	transcript_id "Ledus.S6G013400.t1"; gene_id "Ledus.S6G013400"
Ledus.S6	AUGUSTUS	CDS	5006268	5006477	0.73	+	0	transcript_id "Ledus.S6G013400.t1"; gene_id "Ledus.S6G013400"
Ledus.S6	AUGUSTUS	exon	5006268	5006477	.	+	.	transcript_id "Ledus.S6G013400.t1"; gene_id "Ledus.S6G013400"
Ledus.S6	AUGUSTUS	stop_codon	5006478	5006480	.	+	0	transcript_id "Ledus.S6G013400.t1"; gene_id "Ledus.S6G013400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12503.t1 is derived from g6124.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12431812	12433257	.	-	.	Ledus.S4G165900
Ledus.S4	AUGUSTUS	transcript	12431812	12433257	.	-	.	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	stop_codon	12431809	12431811	.	-	0	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	CDS	12431812	12431971	1	-	1	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	exon	12431812	12431971	.	-	.	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	intron	12431972	12432054	.	-	.	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	CDS	12432055	12432233	0.94	-	0	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	exon	12432055	12432233	.	-	.	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	intron	12432234	12432371	.	-	.	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	CDS	12432372	12432467	0.99	-	0	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	exon	12432372	12432467	.	-	.	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	intron	12432468	12432581	.	-	.	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	CDS	12432582	12432659	0.99	-	0	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	exon	12432582	12432659	.	-	.	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	intron	12432660	12432745	.	-	.	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	CDS	12432746	12432898	1	-	0	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	exon	12432746	12432898	.	-	.	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	intron	12432899	12432978	.	-	.	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	CDS	12432979	12433257	0.91	-	0	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	exon	12432979	12433257	.	-	.	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
Ledus.S4	AUGUSTUS	start_codon	12433255	12433257	.	-	0	transcript_id "Ledus.S4G165900.t1"; gene_id "Ledus.S4G165900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7642.t1 is derived from g12313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4778972	4779302	.	+	.	Ledus.S5G042000
Ledus.S5	AUGUSTUS	transcript	4778972	4779302	.	+	.	transcript_id "Ledus.S5G042000.t1"; gene_id "Ledus.S5G042000"
Ledus.S5	AUGUSTUS	start_codon	4778972	4778974	.	+	0	transcript_id "Ledus.S5G042000.t1"; gene_id "Ledus.S5G042000"
Ledus.S5	AUGUSTUS	CDS	4778972	4779106	0.61	+	0	transcript_id "Ledus.S5G042000.t1"; gene_id "Ledus.S5G042000"
Ledus.S5	AUGUSTUS	exon	4778972	4779106	.	+	.	transcript_id "Ledus.S5G042000.t1"; gene_id "Ledus.S5G042000"
Ledus.S5	AUGUSTUS	intron	4779107	4779197	.	+	.	transcript_id "Ledus.S5G042000.t1"; gene_id "Ledus.S5G042000"
Ledus.S5	AUGUSTUS	CDS	4779198	4779302	0.43	+	0	transcript_id "Ledus.S5G042000.t1"; gene_id "Ledus.S5G042000"
Ledus.S5	AUGUSTUS	exon	4779198	4779302	.	+	.	transcript_id "Ledus.S5G042000.t1"; gene_id "Ledus.S5G042000"
Ledus.S5	AUGUSTUS	stop_codon	4779303	4779305	.	+	0	transcript_id "Ledus.S5G042000.t1"; gene_id "Ledus.S5G042000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2090.t1 is derived from g8953.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14690318	14693037	.	+	.	Ledus.S2G197200
Ledus.S2	AUGUSTUS	transcript	14690318	14692924	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	start_codon	14690318	14690320	.	+	0	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14690318	14690393	0.88	+	0	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14690318	14690393	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14690394	14690521	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14690522	14690617	1	+	2	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14690522	14690617	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14690618	14690789	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14690790	14690896	1	+	2	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14690790	14690896	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14690897	14691235	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14691236	14691299	1	+	0	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14691236	14691299	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14691300	14691591	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14691592	14691713	1	+	2	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14691592	14691713	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14691714	14691839	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14691840	14691934	1	+	0	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14691840	14691934	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14691935	14692048	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14692049	14692137	1	+	1	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14692049	14692137	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14692138	14692316	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14692317	14692411	1	+	2	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14692317	14692411	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14692412	14692647	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14692648	14692686	0.97	+	0	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14692648	14692686	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14692687	14692897	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14692898	14692924	0.9	+	0	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14692898	14692924	.	+	.	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	stop_codon	14692925	14692927	.	+	0	transcript_id "Ledus.S2G197200.t1"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	transcript	14690318	14693037	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	start_codon	14690318	14690320	.	+	0	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14690318	14690393	0.83	+	0	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14690318	14690393	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14690394	14690521	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14690522	14690617	1	+	2	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14690522	14690617	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14690618	14690789	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14690790	14690896	1	+	2	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14690790	14690896	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14690897	14691235	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14691236	14691299	1	+	0	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14691236	14691299	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14691300	14691591	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14691592	14691713	1	+	2	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14691592	14691713	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14691714	14691839	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14691840	14691934	1	+	0	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14691840	14691934	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14691935	14692048	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14692049	14692137	1	+	1	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14692049	14692137	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14692138	14692316	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14692317	14692411	1	+	2	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14692317	14692411	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14692412	14692647	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14692648	14692686	0.95	+	0	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14692648	14692686	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	intron	14692687	14692932	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	CDS	14692933	14693037	0.79	+	0	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	exon	14692933	14693037	.	+	.	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
Ledus.S2	AUGUSTUS	stop_codon	14693038	14693040	.	+	0	transcript_id "Ledus.S2G197200.t2"; gene_id "Ledus.S2G197200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6326.t1 is derived from g3769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30500142	30501322	.	-	.	Ledus.S1G374700
Ledus.S1	AUGUSTUS	transcript	30500142	30501322	.	-	.	transcript_id "Ledus.S1G374700.t1"; gene_id "Ledus.S1G374700"
Ledus.S1	AUGUSTUS	stop_codon	30500139	30500141	.	-	0	transcript_id "Ledus.S1G374700.t1"; gene_id "Ledus.S1G374700"
Ledus.S1	AUGUSTUS	CDS	30500142	30500341	1	-	2	transcript_id "Ledus.S1G374700.t1"; gene_id "Ledus.S1G374700"
Ledus.S1	AUGUSTUS	exon	30500142	30500341	.	-	.	transcript_id "Ledus.S1G374700.t1"; gene_id "Ledus.S1G374700"
Ledus.S1	AUGUSTUS	intron	30500342	30500469	.	-	.	transcript_id "Ledus.S1G374700.t1"; gene_id "Ledus.S1G374700"
Ledus.S1	AUGUSTUS	CDS	30500470	30500752	1	-	0	transcript_id "Ledus.S1G374700.t1"; gene_id "Ledus.S1G374700"
Ledus.S1	AUGUSTUS	exon	30500470	30500752	.	-	.	transcript_id "Ledus.S1G374700.t1"; gene_id "Ledus.S1G374700"
Ledus.S1	AUGUSTUS	intron	30500753	30500845	.	-	.	transcript_id "Ledus.S1G374700.t1"; gene_id "Ledus.S1G374700"
Ledus.S1	AUGUSTUS	CDS	30500846	30501322	0.98	-	0	transcript_id "Ledus.S1G374700.t1"; gene_id "Ledus.S1G374700"
Ledus.S1	AUGUSTUS	exon	30500846	30501322	.	-	.	transcript_id "Ledus.S1G374700.t1"; gene_id "Ledus.S1G374700"
Ledus.S1	AUGUSTUS	start_codon	30501320	30501322	.	-	0	transcript_id "Ledus.S1G374700.t1"; gene_id "Ledus.S1G374700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4660.t1 is derived from g2098.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18815404	18816777	.	+	.	Ledus.S1G208100
Ledus.S1	AUGUSTUS	transcript	18815404	18816777	.	+	.	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	start_codon	18815404	18815406	.	+	0	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	CDS	18815404	18815507	0.74	+	0	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	exon	18815404	18815507	.	+	.	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	intron	18815508	18815627	.	+	.	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	CDS	18815628	18815678	0.84	+	1	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	exon	18815628	18815678	.	+	.	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	intron	18815679	18815787	.	+	.	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	CDS	18815788	18815900	1	+	1	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	exon	18815788	18815900	.	+	.	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	intron	18815901	18816008	.	+	.	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	CDS	18816009	18816083	0.92	+	2	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	exon	18816009	18816083	.	+	.	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	intron	18816084	18816181	.	+	.	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	CDS	18816182	18816777	0.86	+	2	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	exon	18816182	18816777	.	+	.	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
Ledus.S1	AUGUSTUS	stop_codon	18816778	18816780	.	+	0	transcript_id "Ledus.S1G208100.t1"; gene_id "Ledus.S1G208100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2195.t1 is derived from g9058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15888611	15891893	.	+	.	Ledus.S2G207700
Ledus.S2	AUGUSTUS	transcript	15888611	15891893	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	start_codon	15888611	15888613	.	+	0	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15888611	15888680	0.96	+	0	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15888611	15888680	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15888681	15889045	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15889046	15889140	1	+	2	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15889046	15889140	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15889141	15889271	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15889272	15889348	1	+	0	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15889272	15889348	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15889349	15889486	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15889487	15889581	1	+	1	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15889487	15889581	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15889582	15889791	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15889792	15889861	1	+	2	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15889792	15889861	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15889862	15889949	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15889950	15890019	1	+	1	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15889950	15890019	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15890020	15890157	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15890158	15890231	1	+	0	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15890158	15890231	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15890232	15890422	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15890423	15890465	1	+	1	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15890423	15890465	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15890466	15890548	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15890549	15890630	1	+	0	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15890549	15890630	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15890631	15890759	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15890760	15890848	1	+	2	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15890760	15890848	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15890849	15890946	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15890947	15891032	1	+	0	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15890947	15891032	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15891033	15891155	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15891156	15891219	1	+	1	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15891156	15891219	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15891220	15891420	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15891421	15891524	1	+	0	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15891421	15891524	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15891525	15891618	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15891619	15891677	1	+	1	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15891619	15891677	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	intron	15891678	15891765	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	CDS	15891766	15891893	1	+	2	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	exon	15891766	15891893	.	+	.	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
Ledus.S2	AUGUSTUS	stop_codon	15891894	15891896	.	+	0	transcript_id "Ledus.S2G207700.t1"; gene_id "Ledus.S2G207700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10871.t1 is derived from g4489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	189251	189454	.	-	.	Ledus.S4G002700
Ledus.S4	AUGUSTUS	transcript	189251	189454	.	-	.	transcript_id "Ledus.S4G002700.t1"; gene_id "Ledus.S4G002700"
Ledus.S4	AUGUSTUS	stop_codon	189248	189250	.	-	0	transcript_id "Ledus.S4G002700.t1"; gene_id "Ledus.S4G002700"
Ledus.S4	AUGUSTUS	CDS	189251	189454	0.47	-	0	transcript_id "Ledus.S4G002700.t1"; gene_id "Ledus.S4G002700"
Ledus.S4	AUGUSTUS	exon	189251	189454	.	-	.	transcript_id "Ledus.S4G002700.t1"; gene_id "Ledus.S4G002700"
Ledus.S4	AUGUSTUS	start_codon	189452	189454	.	-	0	transcript_id "Ledus.S4G002700.t1"; gene_id "Ledus.S4G002700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9886.t1 is derived from g10916.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10925520	10926839	.	+	.	Ledus.S3G136300
Ledus.S3	AUGUSTUS	transcript	10925520	10926839	.	+	.	transcript_id "Ledus.S3G136300.t1"; gene_id "Ledus.S3G136300"
Ledus.S3	AUGUSTUS	start_codon	10925520	10925522	.	+	0	transcript_id "Ledus.S3G136300.t1"; gene_id "Ledus.S3G136300"
Ledus.S3	AUGUSTUS	CDS	10925520	10926135	0.52	+	0	transcript_id "Ledus.S3G136300.t1"; gene_id "Ledus.S3G136300"
Ledus.S3	AUGUSTUS	exon	10925520	10926135	.	+	.	transcript_id "Ledus.S3G136300.t1"; gene_id "Ledus.S3G136300"
Ledus.S3	AUGUSTUS	intron	10926136	10926236	.	+	.	transcript_id "Ledus.S3G136300.t1"; gene_id "Ledus.S3G136300"
Ledus.S3	AUGUSTUS	CDS	10926237	10926337	0.66	+	2	transcript_id "Ledus.S3G136300.t1"; gene_id "Ledus.S3G136300"
Ledus.S3	AUGUSTUS	exon	10926237	10926337	.	+	.	transcript_id "Ledus.S3G136300.t1"; gene_id "Ledus.S3G136300"
Ledus.S3	AUGUSTUS	intron	10926338	10926692	.	+	.	transcript_id "Ledus.S3G136300.t1"; gene_id "Ledus.S3G136300"
Ledus.S3	AUGUSTUS	CDS	10926693	10926839	0.98	+	0	transcript_id "Ledus.S3G136300.t1"; gene_id "Ledus.S3G136300"
Ledus.S3	AUGUSTUS	exon	10926693	10926839	.	+	.	transcript_id "Ledus.S3G136300.t1"; gene_id "Ledus.S3G136300"
Ledus.S3	AUGUSTUS	stop_codon	10926840	10926842	.	+	0	transcript_id "Ledus.S3G136300.t1"; gene_id "Ledus.S3G136300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6453.t1 is derived from g3896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31330802	31332799	.	+	.	Ledus.S1G387400
Ledus.S1	AUGUSTUS	transcript	31330802	31332799	.	+	.	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	start_codon	31330802	31330804	.	+	0	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	CDS	31330802	31331335	0.59	+	0	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	exon	31330802	31331335	.	+	.	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	intron	31331336	31331460	.	+	.	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	CDS	31331461	31331910	0.88	+	0	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	exon	31331461	31331910	.	+	.	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	intron	31331911	31332004	.	+	.	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	CDS	31332005	31332317	0.99	+	0	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	exon	31332005	31332317	.	+	.	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	intron	31332318	31332665	.	+	.	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	CDS	31332666	31332799	1	+	2	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	exon	31332666	31332799	.	+	.	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
Ledus.S1	AUGUSTUS	stop_codon	31332800	31332802	.	+	0	transcript_id "Ledus.S1G387400.t1"; gene_id "Ledus.S1G387400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4887.t1 is derived from g2325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20532288	20537271	.	-	.	Ledus.S1G230800
Ledus.S1	AUGUSTUS	transcript	20532288	20537271	.	-	.	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	stop_codon	20532285	20532287	.	-	0	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	CDS	20532288	20533806	0.99	-	1	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	exon	20532288	20533806	.	-	.	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	intron	20533807	20533909	.	-	.	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	CDS	20533910	20536152	1	-	0	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	exon	20533910	20536152	.	-	.	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	intron	20536153	20536326	.	-	.	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	CDS	20536327	20536606	1	-	1	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	exon	20536327	20536606	.	-	.	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	intron	20536607	20536829	.	-	.	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	CDS	20536830	20536849	1	-	0	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	exon	20536830	20536849	.	-	.	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	intron	20536850	20536905	.	-	.	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	CDS	20536906	20536946	0.99	-	2	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	exon	20536906	20536946	.	-	.	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	intron	20536947	20537144	.	-	.	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	CDS	20537145	20537271	1	-	0	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	exon	20537145	20537271	.	-	.	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
Ledus.S1	AUGUSTUS	start_codon	20537269	20537271	.	-	0	transcript_id "Ledus.S1G230800.t1"; gene_id "Ledus.S1G230800"
# This transcript jg5385.t2 is derived from g2824.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg5385.t3 is derived from g2824.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5386.t1 is derived from g2825.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23965022	23966545	.	+	.	Ledus.S1G280700
Ledus.S1	AUGUSTUS	transcript	23965022	23966545	.	+	.	transcript_id "Ledus.S1G280700.t1"; gene_id "Ledus.S1G280700"
Ledus.S1	AUGUSTUS	start_codon	23965022	23965024	.	+	0	transcript_id "Ledus.S1G280700.t1"; gene_id "Ledus.S1G280700"
Ledus.S1	AUGUSTUS	CDS	23965022	23966545	0.83	+	0	transcript_id "Ledus.S1G280700.t1"; gene_id "Ledus.S1G280700"
Ledus.S1	AUGUSTUS	exon	23965022	23966545	.	+	.	transcript_id "Ledus.S1G280700.t1"; gene_id "Ledus.S1G280700"
Ledus.S1	AUGUSTUS	stop_codon	23966546	23966548	.	+	0	transcript_id "Ledus.S1G280700.t1"; gene_id "Ledus.S1G280700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8098.t1 is derived from g12769.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9133362	9134429	.	-	.	Ledus.S5G087600
Ledus.S5	AUGUSTUS	transcript	9133362	9134429	.	-	.	transcript_id "Ledus.S5G087600.t1"; gene_id "Ledus.S5G087600"
Ledus.S5	AUGUSTUS	stop_codon	9133359	9133361	.	-	0	transcript_id "Ledus.S5G087600.t1"; gene_id "Ledus.S5G087600"
Ledus.S5	AUGUSTUS	CDS	9133362	9133969	0.99	-	2	transcript_id "Ledus.S5G087600.t1"; gene_id "Ledus.S5G087600"
Ledus.S5	AUGUSTUS	exon	9133362	9133969	.	-	.	transcript_id "Ledus.S5G087600.t1"; gene_id "Ledus.S5G087600"
Ledus.S5	AUGUSTUS	intron	9133970	9134092	.	-	.	transcript_id "Ledus.S5G087600.t1"; gene_id "Ledus.S5G087600"
Ledus.S5	AUGUSTUS	CDS	9134093	9134429	0.94	-	0	transcript_id "Ledus.S5G087600.t1"; gene_id "Ledus.S5G087600"
Ledus.S5	AUGUSTUS	exon	9134093	9134429	.	-	.	transcript_id "Ledus.S5G087600.t1"; gene_id "Ledus.S5G087600"
Ledus.S5	AUGUSTUS	start_codon	9134427	9134429	.	-	0	transcript_id "Ledus.S5G087600.t1"; gene_id "Ledus.S5G087600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4758.t1 is derived from g2196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19628373	19629346	.	+	.	Ledus.S1G217900
Ledus.S1	AUGUSTUS	transcript	19628373	19629346	.	+	.	transcript_id "Ledus.S1G217900.t1"; gene_id "Ledus.S1G217900"
Ledus.S1	AUGUSTUS	start_codon	19628373	19628375	.	+	0	transcript_id "Ledus.S1G217900.t1"; gene_id "Ledus.S1G217900"
Ledus.S1	AUGUSTUS	CDS	19628373	19628419	0.81	+	0	transcript_id "Ledus.S1G217900.t1"; gene_id "Ledus.S1G217900"
Ledus.S1	AUGUSTUS	exon	19628373	19628419	.	+	.	transcript_id "Ledus.S1G217900.t1"; gene_id "Ledus.S1G217900"
Ledus.S1	AUGUSTUS	intron	19628420	19628502	.	+	.	transcript_id "Ledus.S1G217900.t1"; gene_id "Ledus.S1G217900"
Ledus.S1	AUGUSTUS	CDS	19628503	19628520	0.82	+	1	transcript_id "Ledus.S1G217900.t1"; gene_id "Ledus.S1G217900"
Ledus.S1	AUGUSTUS	exon	19628503	19628520	.	+	.	transcript_id "Ledus.S1G217900.t1"; gene_id "Ledus.S1G217900"
Ledus.S1	AUGUSTUS	intron	19628521	19628613	.	+	.	transcript_id "Ledus.S1G217900.t1"; gene_id "Ledus.S1G217900"
Ledus.S1	AUGUSTUS	CDS	19628614	19629346	1	+	1	transcript_id "Ledus.S1G217900.t1"; gene_id "Ledus.S1G217900"
Ledus.S1	AUGUSTUS	exon	19628614	19629346	.	+	.	transcript_id "Ledus.S1G217900.t1"; gene_id "Ledus.S1G217900"
Ledus.S1	AUGUSTUS	stop_codon	19629347	19629349	.	+	0	transcript_id "Ledus.S1G217900.t1"; gene_id "Ledus.S1G217900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2405.t1 is derived from g9268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17941649	17941966	.	+	.	Ledus.S2G228700
Ledus.S2	AUGUSTUS	transcript	17941649	17941966	.	+	.	transcript_id "Ledus.S2G228700.t1"; gene_id "Ledus.S2G228700"
Ledus.S2	AUGUSTUS	start_codon	17941649	17941651	.	+	0	transcript_id "Ledus.S2G228700.t1"; gene_id "Ledus.S2G228700"
Ledus.S2	AUGUSTUS	CDS	17941649	17941966	0.43	+	0	transcript_id "Ledus.S2G228700.t1"; gene_id "Ledus.S2G228700"
Ledus.S2	AUGUSTUS	exon	17941649	17941966	.	+	.	transcript_id "Ledus.S2G228700.t1"; gene_id "Ledus.S2G228700"
Ledus.S2	AUGUSTUS	stop_codon	17941967	17941969	.	+	0	transcript_id "Ledus.S2G228700.t1"; gene_id "Ledus.S2G228700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5873.t1 is derived from g3315.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27493179	27493610	.	+	.	Ledus.S1G329400
Ledus.S1	AUGUSTUS	transcript	27493179	27493610	.	+	.	transcript_id "Ledus.S1G329400.t1"; gene_id "Ledus.S1G329400"
Ledus.S1	AUGUSTUS	start_codon	27493179	27493181	.	+	0	transcript_id "Ledus.S1G329400.t1"; gene_id "Ledus.S1G329400"
Ledus.S1	AUGUSTUS	CDS	27493179	27493610	0.58	+	0	transcript_id "Ledus.S1G329400.t1"; gene_id "Ledus.S1G329400"
Ledus.S1	AUGUSTUS	exon	27493179	27493610	.	+	.	transcript_id "Ledus.S1G329400.t1"; gene_id "Ledus.S1G329400"
Ledus.S1	AUGUSTUS	stop_codon	27493611	27493613	.	+	0	transcript_id "Ledus.S1G329400.t1"; gene_id "Ledus.S1G329400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11996.t1 is derived from g5615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8386125	8386334	.	-	.	Ledus.S4G115200
Ledus.S4	AUGUSTUS	transcript	8386125	8386334	.	-	.	transcript_id "Ledus.S4G115200.t1"; gene_id "Ledus.S4G115200"
Ledus.S4	AUGUSTUS	stop_codon	8386122	8386124	.	-	0	transcript_id "Ledus.S4G115200.t1"; gene_id "Ledus.S4G115200"
Ledus.S4	AUGUSTUS	CDS	8386125	8386334	0.98	-	0	transcript_id "Ledus.S4G115200.t1"; gene_id "Ledus.S4G115200"
Ledus.S4	AUGUSTUS	exon	8386125	8386334	.	-	.	transcript_id "Ledus.S4G115200.t1"; gene_id "Ledus.S4G115200"
Ledus.S4	AUGUSTUS	start_codon	8386332	8386334	.	-	0	transcript_id "Ledus.S4G115200.t1"; gene_id "Ledus.S4G115200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6848.t1 is derived from g4292.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34631352	34633101	.	-	.	Ledus.S1G426900
Ledus.S1	AUGUSTUS	transcript	34631352	34633101	.	-	.	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	stop_codon	34631349	34631351	.	-	0	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	CDS	34631352	34631699	1	-	0	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	exon	34631352	34631699	.	-	.	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	intron	34631700	34631806	.	-	.	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	CDS	34631807	34632143	1	-	1	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	exon	34631807	34632143	.	-	.	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	intron	34632144	34632242	.	-	.	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	CDS	34632243	34632654	1	-	2	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	exon	34632243	34632654	.	-	.	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	intron	34632655	34632744	.	-	.	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	CDS	34632745	34632794	1	-	1	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	exon	34632745	34632794	.	-	.	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	intron	34632795	34632878	.	-	.	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	CDS	34632879	34632964	0.83	-	0	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	exon	34632879	34632964	.	-	.	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	intron	34632965	34633068	.	-	.	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	CDS	34633069	34633101	0.48	-	0	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	exon	34633069	34633101	.	-	.	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	start_codon	34633099	34633101	.	-	0	transcript_id "Ledus.S1G426900.t1"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	transcript	34631352	34633101	.	-	.	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	stop_codon	34631349	34631351	.	-	0	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	CDS	34631352	34631699	0.99	-	0	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	exon	34631352	34631699	.	-	.	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	intron	34631700	34631806	.	-	.	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	CDS	34631807	34632143	0.99	-	1	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	exon	34631807	34632143	.	-	.	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	intron	34632144	34632242	.	-	.	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	CDS	34632243	34632654	1	-	2	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	exon	34632243	34632654	.	-	.	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	intron	34632655	34632744	.	-	.	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	CDS	34632745	34632797	0.99	-	1	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	exon	34632745	34632797	.	-	.	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	intron	34632798	34632878	.	-	.	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	CDS	34632879	34632964	0.82	-	0	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	exon	34632879	34632964	.	-	.	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	intron	34632965	34633068	.	-	.	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	CDS	34633069	34633101	0.44	-	0	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	exon	34633069	34633101	.	-	.	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
Ledus.S1	AUGUSTUS	start_codon	34633099	34633101	.	-	0	transcript_id "Ledus.S1G426900.t2"; gene_id "Ledus.S1G426900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3081.t1 is derived from g516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5772328	5772990	.	-	.	Ledus.S1G050200
Ledus.S1	AUGUSTUS	transcript	5772328	5772990	.	-	.	transcript_id "Ledus.S1G050200.t1"; gene_id "Ledus.S1G050200"
Ledus.S1	AUGUSTUS	stop_codon	5772325	5772327	.	-	0	transcript_id "Ledus.S1G050200.t1"; gene_id "Ledus.S1G050200"
Ledus.S1	AUGUSTUS	CDS	5772328	5772990	0.56	-	0	transcript_id "Ledus.S1G050200.t1"; gene_id "Ledus.S1G050200"
Ledus.S1	AUGUSTUS	exon	5772328	5772990	.	-	.	transcript_id "Ledus.S1G050200.t1"; gene_id "Ledus.S1G050200"
Ledus.S1	AUGUSTUS	start_codon	5772988	5772990	.	-	0	transcript_id "Ledus.S1G050200.t1"; gene_id "Ledus.S1G050200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9681.t1 is derived from g10711.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8989581	8991197	.	-	.	Ledus.S3G115800
Ledus.S3	AUGUSTUS	transcript	8989581	8991197	.	-	.	transcript_id "Ledus.S3G115800.t1"; gene_id "Ledus.S3G115800"
Ledus.S3	AUGUSTUS	stop_codon	8989578	8989580	.	-	0	transcript_id "Ledus.S3G115800.t1"; gene_id "Ledus.S3G115800"
Ledus.S3	AUGUSTUS	CDS	8989581	8991197	1	-	0	transcript_id "Ledus.S3G115800.t1"; gene_id "Ledus.S3G115800"
Ledus.S3	AUGUSTUS	exon	8989581	8991197	.	-	.	transcript_id "Ledus.S3G115800.t1"; gene_id "Ledus.S3G115800"
Ledus.S3	AUGUSTUS	start_codon	8991195	8991197	.	-	0	transcript_id "Ledus.S3G115800.t1"; gene_id "Ledus.S3G115800"
Ledus.S3	AUGUSTUS	transcript	8989581	8990057	.	-	.	transcript_id "Ledus.S3G115800.t2"; gene_id "Ledus.S3G115800"
Ledus.S3	AUGUSTUS	stop_codon	8989578	8989580	.	-	0	transcript_id "Ledus.S3G115800.t2"; gene_id "Ledus.S3G115800"
Ledus.S3	AUGUSTUS	CDS	8989581	8990057	0.98	-	0	transcript_id "Ledus.S3G115800.t2"; gene_id "Ledus.S3G115800"
Ledus.S3	AUGUSTUS	exon	8989581	8990057	.	-	.	transcript_id "Ledus.S3G115800.t2"; gene_id "Ledus.S3G115800"
Ledus.S3	AUGUSTUS	start_codon	8990055	8990057	.	-	0	transcript_id "Ledus.S3G115800.t2"; gene_id "Ledus.S3G115800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12103.t1 is derived from g5722.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9512401	9516051	.	-	.	Ledus.S4G125900
Ledus.S4	AUGUSTUS	transcript	9512401	9516051	.	-	.	transcript_id "Ledus.S4G125900.t1"; gene_id "Ledus.S4G125900"
Ledus.S4	AUGUSTUS	stop_codon	9512398	9512400	.	-	0	transcript_id "Ledus.S4G125900.t1"; gene_id "Ledus.S4G125900"
Ledus.S4	AUGUSTUS	CDS	9512401	9516051	0.96	-	0	transcript_id "Ledus.S4G125900.t1"; gene_id "Ledus.S4G125900"
Ledus.S4	AUGUSTUS	exon	9512401	9516051	.	-	.	transcript_id "Ledus.S4G125900.t1"; gene_id "Ledus.S4G125900"
Ledus.S4	AUGUSTUS	start_codon	9516049	9516051	.	-	0	transcript_id "Ledus.S4G125900.t1"; gene_id "Ledus.S4G125900"
Ledus.S4	AUGUSTUS	transcript	9512568	9516051	.	-	.	transcript_id "Ledus.S4G125900.t2"; gene_id "Ledus.S4G125900"
Ledus.S4	AUGUSTUS	stop_codon	9512565	9512567	.	-	0	transcript_id "Ledus.S4G125900.t2"; gene_id "Ledus.S4G125900"
Ledus.S4	AUGUSTUS	CDS	9512568	9512575	0.82	-	2	transcript_id "Ledus.S4G125900.t2"; gene_id "Ledus.S4G125900"
Ledus.S4	AUGUSTUS	exon	9512568	9512575	.	-	.	transcript_id "Ledus.S4G125900.t2"; gene_id "Ledus.S4G125900"
Ledus.S4	AUGUSTUS	intron	9512576	9512675	.	-	.	transcript_id "Ledus.S4G125900.t2"; gene_id "Ledus.S4G125900"
Ledus.S4	AUGUSTUS	CDS	9512676	9516051	0.28	-	0	transcript_id "Ledus.S4G125900.t2"; gene_id "Ledus.S4G125900"
Ledus.S4	AUGUSTUS	exon	9512676	9516051	.	-	.	transcript_id "Ledus.S4G125900.t2"; gene_id "Ledus.S4G125900"
Ledus.S4	AUGUSTUS	start_codon	9516049	9516051	.	-	0	transcript_id "Ledus.S4G125900.t2"; gene_id "Ledus.S4G125900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1082.t1 is derived from g7943.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7320340	7323458	.	-	.	Ledus.S2G096400
Ledus.S2	AUGUSTUS	transcript	7320340	7323458	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	stop_codon	7320337	7320339	.	-	0	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7320340	7320408	1	-	0	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7320340	7320408	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	intron	7320409	7320545	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7320546	7320603	1	-	1	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7320546	7320603	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	intron	7320604	7320716	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7320717	7320926	1	-	1	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7320717	7320926	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	intron	7320927	7321065	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7321066	7321160	1	-	0	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7321066	7321160	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	intron	7321161	7321274	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7321275	7321394	0.99	-	0	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7321275	7321394	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	intron	7321395	7321502	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7321503	7321580	1	-	0	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7321503	7321580	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	intron	7321581	7321687	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7321688	7321760	1	-	1	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7321688	7321760	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	intron	7321761	7321865	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7321866	7321999	1	-	0	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7321866	7321999	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	intron	7322000	7322083	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7322084	7322161	1	-	0	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7322084	7322161	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	intron	7322162	7322266	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7322267	7322428	0.98	-	0	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7322267	7322428	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	intron	7322429	7322578	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7322579	7322725	0.98	-	0	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7322579	7322725	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	intron	7322726	7322833	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7322834	7323096	1	-	2	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7322834	7323096	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	intron	7323097	7323346	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	CDS	7323347	7323458	0.59	-	0	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	exon	7323347	7323458	.	-	.	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
Ledus.S2	AUGUSTUS	start_codon	7323456	7323458	.	-	0	transcript_id "Ledus.S2G096400.t1"; gene_id "Ledus.S2G096400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2492.t1 is derived from g9355.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18457143	18461302	.	-	.	Ledus.S2G237400
Ledus.S2	AUGUSTUS	transcript	18457143	18461302	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	stop_codon	18457140	18457142	.	-	0	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	CDS	18457143	18457546	0.96	-	2	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	exon	18457143	18457546	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	intron	18457547	18457632	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	CDS	18457633	18457888	1	-	0	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	exon	18457633	18457888	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	intron	18457889	18458161	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	CDS	18458162	18458227	1	-	0	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	exon	18458162	18458227	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	intron	18458228	18458324	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	CDS	18458325	18458511	1	-	1	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	exon	18458325	18458511	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	intron	18458512	18458643	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	CDS	18458644	18458889	1	-	1	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	exon	18458644	18458889	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	intron	18458890	18459007	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	CDS	18459008	18459147	1	-	0	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	exon	18459008	18459147	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	intron	18459148	18459251	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	CDS	18459252	18459440	1	-	0	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	exon	18459252	18459440	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	intron	18459441	18459547	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	CDS	18459548	18461302	0.98	-	0	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	exon	18459548	18461302	.	-	.	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
Ledus.S2	AUGUSTUS	start_codon	18461300	18461302	.	-	0	transcript_id "Ledus.S2G237400.t1"; gene_id "Ledus.S2G237400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7041.t1 is derived from g6572.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	978243	981176	.	-	.	Ledus.C7G010200
Ledus.C7	AUGUSTUS	transcript	978243	981176	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	stop_codon	978240	978242	.	-	0	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	CDS	978243	978442	0.81	-	2	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	exon	978243	978442	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	intron	978443	978531	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	CDS	978532	978649	0.98	-	0	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	exon	978532	978649	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	intron	978650	978819	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	CDS	978820	978855	0.98	-	0	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	exon	978820	978855	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	intron	978856	978950	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	CDS	978951	979091	1	-	0	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	exon	978951	979091	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	intron	979092	979175	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	CDS	979176	979295	1	-	0	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	exon	979176	979295	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	intron	979296	979378	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	CDS	979379	979466	1	-	1	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	exon	979379	979466	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	intron	979467	979561	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	CDS	979562	979680	1	-	0	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	exon	979562	979680	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	intron	979681	979834	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	CDS	979835	980026	1	-	0	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	exon	979835	980026	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	intron	980027	980174	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	CDS	980175	980366	1	-	0	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	exon	980175	980366	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	intron	980367	980484	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	CDS	980485	980592	1	-	0	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	exon	980485	980592	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	intron	980593	980702	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	CDS	980703	980819	0.99	-	0	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	exon	980703	980819	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	intron	980820	981053	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	CDS	981054	981176	0.93	-	0	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	exon	981054	981176	.	-	.	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
Ledus.C7	AUGUSTUS	start_codon	981174	981176	.	-	0	transcript_id "Ledus.C7G010200.t1"; gene_id "Ledus.C7G010200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1795.t1 is derived from g8658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12631733	12632164	.	+	.	Ledus.S2G167700
Ledus.S2	AUGUSTUS	transcript	12631733	12632164	.	+	.	transcript_id "Ledus.S2G167700.t1"; gene_id "Ledus.S2G167700"
Ledus.S2	AUGUSTUS	start_codon	12631733	12631735	.	+	0	transcript_id "Ledus.S2G167700.t1"; gene_id "Ledus.S2G167700"
Ledus.S2	AUGUSTUS	CDS	12631733	12632164	0.56	+	0	transcript_id "Ledus.S2G167700.t1"; gene_id "Ledus.S2G167700"
Ledus.S2	AUGUSTUS	exon	12631733	12632164	.	+	.	transcript_id "Ledus.S2G167700.t1"; gene_id "Ledus.S2G167700"
Ledus.S2	AUGUSTUS	stop_codon	12632165	12632167	.	+	0	transcript_id "Ledus.S2G167700.t1"; gene_id "Ledus.S2G167700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10911.t1 is derived from g4529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	423639	428066	.	+	.	Ledus.S4G006700
Ledus.S4	AUGUSTUS	transcript	423639	428066	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	start_codon	423639	423641	.	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	423639	423643	0.81	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	423639	423643	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	423644	423771	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	423772	423799	0.84	+	1	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	423772	423799	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	423800	424647	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	424648	424745	0.49	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	424648	424745	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	424746	424903	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	424904	425126	0.44	+	1	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	424904	425126	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	425127	425280	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	425281	425415	1	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	425281	425415	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	425416	425574	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	425575	425725	1	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	425575	425725	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	425726	425873	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	425874	425968	1	+	2	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	425874	425968	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	425969	426045	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	426046	426165	1	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	426046	426165	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	426166	426269	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	426270	426326	0.98	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	426270	426326	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	426327	426437	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	426438	426584	1	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	426438	426584	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	426585	426792	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	426793	426912	0.99	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	426793	426912	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	426913	427031	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	427032	427142	1	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	427032	427142	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	427143	427268	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	427269	427415	1	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	427269	427415	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	427416	427529	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	427530	427610	1	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	427530	427610	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	427611	427685	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	427686	427853	1	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	427686	427853	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	intron	427854	427949	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	CDS	427950	428066	0.87	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	exon	427950	428066	.	+	.	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
Ledus.S4	AUGUSTUS	stop_codon	428067	428069	.	+	0	transcript_id "Ledus.S4G006700.t1"; gene_id "Ledus.S4G006700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4727.t1 is derived from g2165.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19270239	19270621	.	+	.	Ledus.S1G214800
Ledus.S1	AUGUSTUS	transcript	19270239	19270621	.	+	.	transcript_id "Ledus.S1G214800.t1"; gene_id "Ledus.S1G214800"
Ledus.S1	AUGUSTUS	start_codon	19270239	19270241	.	+	0	transcript_id "Ledus.S1G214800.t1"; gene_id "Ledus.S1G214800"
Ledus.S1	AUGUSTUS	CDS	19270239	19270416	0.62	+	0	transcript_id "Ledus.S1G214800.t1"; gene_id "Ledus.S1G214800"
Ledus.S1	AUGUSTUS	exon	19270239	19270416	.	+	.	transcript_id "Ledus.S1G214800.t1"; gene_id "Ledus.S1G214800"
Ledus.S1	AUGUSTUS	intron	19270417	19270523	.	+	.	transcript_id "Ledus.S1G214800.t1"; gene_id "Ledus.S1G214800"
Ledus.S1	AUGUSTUS	CDS	19270524	19270621	0.92	+	2	transcript_id "Ledus.S1G214800.t1"; gene_id "Ledus.S1G214800"
Ledus.S1	AUGUSTUS	exon	19270524	19270621	.	+	.	transcript_id "Ledus.S1G214800.t1"; gene_id "Ledus.S1G214800"
Ledus.S1	AUGUSTUS	stop_codon	19270622	19270624	.	+	0	transcript_id "Ledus.S1G214800.t1"; gene_id "Ledus.S1G214800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3948.t1 is derived from g1384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13694864	13695172	.	-	.	Ledus.S1G136900
Ledus.S1	AUGUSTUS	transcript	13694864	13695172	.	-	.	transcript_id "Ledus.S1G136900.t1"; gene_id "Ledus.S1G136900"
Ledus.S1	AUGUSTUS	stop_codon	13694861	13694863	.	-	0	transcript_id "Ledus.S1G136900.t1"; gene_id "Ledus.S1G136900"
Ledus.S1	AUGUSTUS	CDS	13694864	13695172	0.98	-	0	transcript_id "Ledus.S1G136900.t1"; gene_id "Ledus.S1G136900"
Ledus.S1	AUGUSTUS	exon	13694864	13695172	.	-	.	transcript_id "Ledus.S1G136900.t1"; gene_id "Ledus.S1G136900"
Ledus.S1	AUGUSTUS	start_codon	13695170	13695172	.	-	0	transcript_id "Ledus.S1G136900.t1"; gene_id "Ledus.S1G136900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9284.t1 is derived from g10314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5771557	5779252	.	+	.	Ledus.S3G076100
Ledus.S3	AUGUSTUS	transcript	5771557	5779103	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	start_codon	5771557	5771559	.	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5771557	5771674	1	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5771557	5771674	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5771675	5771769	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5771770	5771852	0.78	+	2	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5771770	5771852	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5771853	5771959	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5771960	5772017	1	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5771960	5772017	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5772018	5772136	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5772137	5772186	1	+	2	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5772137	5772186	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5772187	5772277	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5772278	5772390	0.95	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5772278	5772390	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5772391	5772477	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5772478	5772520	0.98	+	1	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5772478	5772520	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5772521	5772628	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5772629	5772697	1	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5772629	5772697	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5772698	5772797	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5772798	5773086	1	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5772798	5773086	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5773087	5773173	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5773174	5773494	1	+	2	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5773174	5773494	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5773495	5773587	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5773588	5773775	1	+	2	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5773588	5773775	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5773776	5773844	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5773845	5775066	1	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5773845	5775066	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5775067	5775156	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5775157	5775794	1	+	2	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5775157	5775794	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5775795	5775880	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5775881	5776035	1	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5775881	5776035	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5776036	5776139	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5776140	5776740	1	+	1	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5776140	5776740	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5776741	5776854	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5776855	5777001	1	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5776855	5777001	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5777002	5777068	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5777069	5777344	1	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5777069	5777344	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5777345	5777442	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5777443	5777550	1	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5777443	5777550	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5777551	5777638	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5777639	5777844	1	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5777639	5777844	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5777845	5777919	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5777920	5778223	1	+	1	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5777920	5778223	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5778224	5778300	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5778301	5778881	1	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5778301	5778881	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5778882	5779069	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5779070	5779103	1	+	1	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5779070	5779103	.	+	.	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	stop_codon	5779104	5779106	.	+	0	transcript_id "Ledus.S3G076100.t1"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	transcript	5771557	5779252	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	start_codon	5771557	5771559	.	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5771557	5771674	1	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5771557	5771674	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5771675	5771769	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5771770	5771852	0.84	+	2	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5771770	5771852	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5771853	5771959	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5771960	5772017	1	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5771960	5772017	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5772018	5772136	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5772137	5772186	1	+	2	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5772137	5772186	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5772187	5772277	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5772278	5772390	0.87	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5772278	5772390	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5772391	5772477	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5772478	5772520	0.89	+	1	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5772478	5772520	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5772521	5772628	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5772629	5772697	1	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5772629	5772697	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5772698	5772797	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5772798	5773086	1	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5772798	5773086	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5773087	5773173	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5773174	5773494	0.99	+	2	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5773174	5773494	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5773495	5773587	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5773588	5773775	0.99	+	2	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5773588	5773775	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5773776	5773844	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5773845	5775066	1	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5773845	5775066	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5775067	5775156	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5775157	5775794	1	+	2	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5775157	5775794	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5775795	5775880	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5775881	5776035	0.99	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5775881	5776035	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5776036	5776139	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5776140	5776740	0.98	+	1	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5776140	5776740	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5776741	5776854	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5776855	5777001	0.99	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5776855	5777001	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5777002	5777068	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5777069	5777344	0.98	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5777069	5777344	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5777345	5777442	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5777443	5777550	1	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5777443	5777550	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5777551	5777638	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5777639	5777844	1	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5777639	5777844	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5777845	5777919	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5777920	5778223	1	+	1	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5777920	5778223	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5778224	5778300	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5778301	5778948	0.88	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5778301	5778948	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	intron	5778949	5779069	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	CDS	5779070	5779252	0.88	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	exon	5779070	5779252	.	+	.	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
Ledus.S3	AUGUSTUS	stop_codon	5779253	5779255	.	+	0	transcript_id "Ledus.S3G076100.t2"; gene_id "Ledus.S3G076100"
# This transcript jg11594.t1 is derived from g5212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5431270	5433078	.	+	.	Ledus.S4G075000
Ledus.S4	AUGUSTUS	transcript	5431270	5433078	.	+	.	transcript_id "Ledus.S4G075000.t1"; gene_id "Ledus.S4G075000"
Ledus.S4	AUGUSTUS	start_codon	5431270	5431272	.	+	0	transcript_id "Ledus.S4G075000.t1"; gene_id "Ledus.S4G075000"
Ledus.S4	AUGUSTUS	CDS	5431270	5433078	0.95	+	0	transcript_id "Ledus.S4G075000.t1"; gene_id "Ledus.S4G075000"
Ledus.S4	AUGUSTUS	exon	5431270	5433078	.	+	.	transcript_id "Ledus.S4G075000.t1"; gene_id "Ledus.S4G075000"
Ledus.S4	AUGUSTUS	stop_codon	5433079	5433081	.	+	0	transcript_id "Ledus.S4G075000.t1"; gene_id "Ledus.S4G075000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2226.t1 is derived from g9089.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16176002	16176328	.	+	.	Ledus.S2G210800
Ledus.S2	AUGUSTUS	transcript	16176002	16176328	.	+	.	transcript_id "Ledus.S2G210800.t1"; gene_id "Ledus.S2G210800"
Ledus.S2	AUGUSTUS	start_codon	16176002	16176004	.	+	0	transcript_id "Ledus.S2G210800.t1"; gene_id "Ledus.S2G210800"
Ledus.S2	AUGUSTUS	CDS	16176002	16176328	0.78	+	0	transcript_id "Ledus.S2G210800.t1"; gene_id "Ledus.S2G210800"
Ledus.S2	AUGUSTUS	exon	16176002	16176328	.	+	.	transcript_id "Ledus.S2G210800.t1"; gene_id "Ledus.S2G210800"
Ledus.S2	AUGUSTUS	stop_codon	16176329	16176331	.	+	0	transcript_id "Ledus.S2G210800.t1"; gene_id "Ledus.S2G210800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12323.t1 is derived from g5944.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11203429	11207852	.	-	.	Ledus.S4G147900
Ledus.S4	AUGUSTUS	transcript	11203429	11207852	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	stop_codon	11203426	11203428	.	-	0	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11203429	11203509	0.98	-	0	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11203429	11203509	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11203510	11203596	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11203597	11203711	1	-	1	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11203597	11203711	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11203712	11203781	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11203782	11203858	1	-	0	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11203782	11203858	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11203859	11203939	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11203940	11204044	1	-	0	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11203940	11204044	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11204045	11204119	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11204120	11204205	1	-	2	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11204120	11204205	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11204206	11204321	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11204322	11205646	1	-	1	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11204322	11205646	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11205647	11205739	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11205740	11206689	1	-	0	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11205740	11206689	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11206690	11206783	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11206784	11206956	1	-	2	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11206784	11206956	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11206957	11207271	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11207272	11207330	0.74	-	1	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11207272	11207330	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11207331	11207456	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11207457	11207643	0.63	-	2	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11207457	11207643	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11207644	11207740	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11207741	11207852	0.97	-	0	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11207741	11207852	.	-	.	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	start_codon	11207850	11207852	.	-	0	transcript_id "Ledus.S4G147900.t1"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	transcript	11203429	11207852	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	stop_codon	11203426	11203428	.	-	0	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11203429	11203509	0.95	-	0	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11203429	11203509	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11203510	11203596	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11203597	11203711	1	-	1	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11203597	11203711	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11203712	11203781	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11203782	11203858	1	-	0	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11203782	11203858	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11203859	11203939	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11203940	11204044	1	-	0	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11203940	11204044	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11204045	11204119	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11204120	11204205	1	-	2	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11204120	11204205	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11204206	11204321	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11204322	11205646	1	-	1	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11204322	11205646	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11205647	11205739	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11205740	11206689	1	-	0	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11205740	11206689	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11206690	11206783	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11206784	11206956	0.93	-	2	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11206784	11206956	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11206957	11207562	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11207563	11207643	0.44	-	2	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11207563	11207643	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	intron	11207644	11207740	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	CDS	11207741	11207852	0.99	-	0	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	exon	11207741	11207852	.	-	.	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
Ledus.S4	AUGUSTUS	start_codon	11207850	11207852	.	-	0	transcript_id "Ledus.S4G147900.t2"; gene_id "Ledus.S4G147900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10802.t1 is derived from g11834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17841059	17842004	.	+	.	Ledus.S3G227900
Ledus.S3	AUGUSTUS	transcript	17841059	17842004	.	+	.	transcript_id "Ledus.S3G227900.t1"; gene_id "Ledus.S3G227900"
Ledus.S3	AUGUSTUS	start_codon	17841059	17841061	.	+	0	transcript_id "Ledus.S3G227900.t1"; gene_id "Ledus.S3G227900"
Ledus.S3	AUGUSTUS	CDS	17841059	17841734	0.7	+	0	transcript_id "Ledus.S3G227900.t1"; gene_id "Ledus.S3G227900"
Ledus.S3	AUGUSTUS	exon	17841059	17841734	.	+	.	transcript_id "Ledus.S3G227900.t1"; gene_id "Ledus.S3G227900"
Ledus.S3	AUGUSTUS	intron	17841735	17841865	.	+	.	transcript_id "Ledus.S3G227900.t1"; gene_id "Ledus.S3G227900"
Ledus.S3	AUGUSTUS	CDS	17841866	17841925	0.67	+	2	transcript_id "Ledus.S3G227900.t1"; gene_id "Ledus.S3G227900"
Ledus.S3	AUGUSTUS	exon	17841866	17841925	.	+	.	transcript_id "Ledus.S3G227900.t1"; gene_id "Ledus.S3G227900"
Ledus.S3	AUGUSTUS	intron	17841926	17842002	.	+	.	transcript_id "Ledus.S3G227900.t1"; gene_id "Ledus.S3G227900"
Ledus.S3	AUGUSTUS	CDS	17842003	17842004	0.76	+	2	transcript_id "Ledus.S3G227900.t1"; gene_id "Ledus.S3G227900"
Ledus.S3	AUGUSTUS	exon	17842003	17842004	.	+	.	transcript_id "Ledus.S3G227900.t1"; gene_id "Ledus.S3G227900"
Ledus.S3	AUGUSTUS	stop_codon	17842005	17842007	.	+	0	transcript_id "Ledus.S3G227900.t1"; gene_id "Ledus.S3G227900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10312.t1 is derived from g11342.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14187138	14190176	.	-	.	Ledus.S3G178900
Ledus.S3	AUGUSTUS	transcript	14187138	14190176	.	-	.	transcript_id "Ledus.S3G178900.t1"; gene_id "Ledus.S3G178900"
Ledus.S3	AUGUSTUS	stop_codon	14187135	14187137	.	-	0	transcript_id "Ledus.S3G178900.t1"; gene_id "Ledus.S3G178900"
Ledus.S3	AUGUSTUS	CDS	14187138	14190176	0.55	-	0	transcript_id "Ledus.S3G178900.t1"; gene_id "Ledus.S3G178900"
Ledus.S3	AUGUSTUS	exon	14187138	14190176	.	-	.	transcript_id "Ledus.S3G178900.t1"; gene_id "Ledus.S3G178900"
Ledus.S3	AUGUSTUS	start_codon	14190174	14190176	.	-	0	transcript_id "Ledus.S3G178900.t1"; gene_id "Ledus.S3G178900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10923.t1 is derived from g4541.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	603842	605458	.	-	.	Ledus.S4G007900
Ledus.S4	AUGUSTUS	transcript	603842	605458	.	-	.	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	stop_codon	603839	603841	.	-	0	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	CDS	603842	604009	0.98	-	0	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	exon	603842	604009	.	-	.	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	intron	604010	604113	.	-	.	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	CDS	604114	604488	0.97	-	0	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	exon	604114	604488	.	-	.	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	intron	604489	604568	.	-	.	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	CDS	604569	604662	1	-	1	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	exon	604569	604662	.	-	.	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	intron	604663	604744	.	-	.	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	CDS	604745	604916	1	-	2	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	exon	604745	604916	.	-	.	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	intron	604917	604997	.	-	.	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	CDS	604998	605136	1	-	0	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	exon	604998	605136	.	-	.	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	intron	605137	605221	.	-	.	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	CDS	605222	605458	0.96	-	0	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	exon	605222	605458	.	-	.	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
Ledus.S4	AUGUSTUS	start_codon	605456	605458	.	-	0	transcript_id "Ledus.S4G007900.t1"; gene_id "Ledus.S4G007900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12921.t1 is derived from g4413.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	341538	341946	.	+	.	Ledus.C9G002900
Ledus.C9	AUGUSTUS	transcript	341538	341946	.	+	.	transcript_id "Ledus.C9G002900.t1"; gene_id "Ledus.C9G002900"
Ledus.C9	AUGUSTUS	start_codon	341538	341540	.	+	0	transcript_id "Ledus.C9G002900.t1"; gene_id "Ledus.C9G002900"
Ledus.C9	AUGUSTUS	CDS	341538	341543	0.51	+	0	transcript_id "Ledus.C9G002900.t1"; gene_id "Ledus.C9G002900"
Ledus.C9	AUGUSTUS	exon	341538	341543	.	+	.	transcript_id "Ledus.C9G002900.t1"; gene_id "Ledus.C9G002900"
Ledus.C9	AUGUSTUS	intron	341544	341652	.	+	.	transcript_id "Ledus.C9G002900.t1"; gene_id "Ledus.C9G002900"
Ledus.C9	AUGUSTUS	CDS	341653	341946	0.42	+	0	transcript_id "Ledus.C9G002900.t1"; gene_id "Ledus.C9G002900"
Ledus.C9	AUGUSTUS	exon	341653	341946	.	+	.	transcript_id "Ledus.C9G002900.t1"; gene_id "Ledus.C9G002900"
Ledus.C9	AUGUSTUS	stop_codon	341947	341949	.	+	0	transcript_id "Ledus.C9G002900.t1"; gene_id "Ledus.C9G002900"
# This transcript jg5937.t2 is derived from g3380.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5938.t1 is derived from g3381.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27920300	27921911	.	-	.	Ledus.S1G335900
Ledus.S1	AUGUSTUS	transcript	27920300	27921911	.	-	.	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	stop_codon	27920297	27920299	.	-	0	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	CDS	27920300	27920542	1	-	0	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	exon	27920300	27920542	.	-	.	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	intron	27920543	27920641	.	-	.	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	CDS	27920642	27920764	1	-	0	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	exon	27920642	27920764	.	-	.	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	intron	27920765	27920882	.	-	.	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	CDS	27920883	27921131	0.8	-	0	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	exon	27920883	27921131	.	-	.	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	intron	27921132	27921221	.	-	.	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	CDS	27921222	27921911	0.69	-	0	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	exon	27921222	27921911	.	-	.	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
Ledus.S1	AUGUSTUS	start_codon	27921909	27921911	.	-	0	transcript_id "Ledus.S1G335900.t1"; gene_id "Ledus.S1G335900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8777.t1 is derived from g9807.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1920245	1921583	.	+	.	Ledus.S3G025400
Ledus.S3	AUGUSTUS	transcript	1920245	1921583	.	+	.	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	start_codon	1920245	1920247	.	+	0	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	CDS	1920245	1920329	0.45	+	0	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	exon	1920245	1920329	.	+	.	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	intron	1920330	1920402	.	+	.	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	CDS	1920403	1920542	0.39	+	2	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	exon	1920403	1920542	.	+	.	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	intron	1920543	1920967	.	+	.	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	CDS	1920968	1921042	0.46	+	0	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	exon	1920968	1921042	.	+	.	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	intron	1921043	1921245	.	+	.	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	CDS	1921246	1921287	1	+	0	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	exon	1921246	1921287	.	+	.	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	intron	1921288	1921508	.	+	.	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	CDS	1921509	1921583	1	+	0	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	exon	1921509	1921583	.	+	.	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
Ledus.S3	AUGUSTUS	stop_codon	1921584	1921586	.	+	0	transcript_id "Ledus.S3G025400.t1"; gene_id "Ledus.S3G025400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10488.t1 is derived from g11518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15577272	15582974	.	-	.	Ledus.S3G196500
Ledus.S3	AUGUSTUS	transcript	15577272	15582974	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	stop_codon	15577269	15577271	.	-	0	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	CDS	15577272	15577415	1	-	0	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	exon	15577272	15577415	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	intron	15577416	15577503	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	CDS	15577504	15577719	0.82	-	0	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	exon	15577504	15577719	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	intron	15577720	15577869	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	CDS	15577870	15577990	1	-	1	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	exon	15577870	15577990	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	intron	15577991	15578070	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	CDS	15578071	15578285	1	-	0	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	exon	15578071	15578285	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	intron	15578286	15578369	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	CDS	15578370	15579107	0.91	-	0	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	exon	15578370	15579107	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	intron	15579108	15579217	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	CDS	15579218	15579287	0.91	-	1	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	exon	15579218	15579287	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	intron	15579288	15579385	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	CDS	15579386	15579489	1	-	0	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	exon	15579386	15579489	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	intron	15579490	15579593	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	CDS	15579594	15582470	0.9	-	0	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	exon	15579594	15582470	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	intron	15582471	15582794	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	CDS	15582795	15582974	0.93	-	0	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	exon	15582795	15582974	.	-	.	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
Ledus.S3	AUGUSTUS	start_codon	15582972	15582974	.	-	0	transcript_id "Ledus.S3G196500.t1"; gene_id "Ledus.S3G196500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1611.t1 is derived from g8472.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11376130	11377491	.	-	.	Ledus.S2G149300
Ledus.S2	AUGUSTUS	transcript	11376130	11377491	.	-	.	transcript_id "Ledus.S2G149300.t1"; gene_id "Ledus.S2G149300"
Ledus.S2	AUGUSTUS	stop_codon	11376127	11376129	.	-	0	transcript_id "Ledus.S2G149300.t1"; gene_id "Ledus.S2G149300"
Ledus.S2	AUGUSTUS	CDS	11376130	11377491	0.24	-	0	transcript_id "Ledus.S2G149300.t1"; gene_id "Ledus.S2G149300"
Ledus.S2	AUGUSTUS	exon	11376130	11377491	.	-	.	transcript_id "Ledus.S2G149300.t1"; gene_id "Ledus.S2G149300"
Ledus.S2	AUGUSTUS	start_codon	11377489	11377491	.	-	0	transcript_id "Ledus.S2G149300.t1"; gene_id "Ledus.S2G149300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg139.t1 is derived from g7000.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	250552	252823	.	+	.	Ledus.S2G002100
Ledus.S2	AUGUSTUS	transcript	250552	252823	.	+	.	transcript_id "Ledus.S2G002100.t1"; gene_id "Ledus.S2G002100"
Ledus.S2	AUGUSTUS	start_codon	250552	250554	.	+	0	transcript_id "Ledus.S2G002100.t1"; gene_id "Ledus.S2G002100"
Ledus.S2	AUGUSTUS	CDS	250552	251885	0.93	+	0	transcript_id "Ledus.S2G002100.t1"; gene_id "Ledus.S2G002100"
Ledus.S2	AUGUSTUS	exon	250552	251885	.	+	.	transcript_id "Ledus.S2G002100.t1"; gene_id "Ledus.S2G002100"
Ledus.S2	AUGUSTUS	intron	251886	251973	.	+	.	transcript_id "Ledus.S2G002100.t1"; gene_id "Ledus.S2G002100"
Ledus.S2	AUGUSTUS	CDS	251974	252206	1	+	1	transcript_id "Ledus.S2G002100.t1"; gene_id "Ledus.S2G002100"
Ledus.S2	AUGUSTUS	exon	251974	252206	.	+	.	transcript_id "Ledus.S2G002100.t1"; gene_id "Ledus.S2G002100"
Ledus.S2	AUGUSTUS	intron	252207	252377	.	+	.	transcript_id "Ledus.S2G002100.t1"; gene_id "Ledus.S2G002100"
Ledus.S2	AUGUSTUS	CDS	252378	252823	0.84	+	2	transcript_id "Ledus.S2G002100.t1"; gene_id "Ledus.S2G002100"
Ledus.S2	AUGUSTUS	exon	252378	252823	.	+	.	transcript_id "Ledus.S2G002100.t1"; gene_id "Ledus.S2G002100"
Ledus.S2	AUGUSTUS	stop_codon	252824	252826	.	+	0	transcript_id "Ledus.S2G002100.t1"; gene_id "Ledus.S2G002100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4241.t1 is derived from g1677.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15722301	15723120	.	-	.	Ledus.S1G166200
Ledus.S1	AUGUSTUS	transcript	15722301	15723120	.	-	.	transcript_id "Ledus.S1G166200.t1"; gene_id "Ledus.S1G166200"
Ledus.S1	AUGUSTUS	stop_codon	15722298	15722300	.	-	0	transcript_id "Ledus.S1G166200.t1"; gene_id "Ledus.S1G166200"
Ledus.S1	AUGUSTUS	CDS	15722301	15722381	0.33	-	0	transcript_id "Ledus.S1G166200.t1"; gene_id "Ledus.S1G166200"
Ledus.S1	AUGUSTUS	exon	15722301	15722381	.	-	.	transcript_id "Ledus.S1G166200.t1"; gene_id "Ledus.S1G166200"
Ledus.S1	AUGUSTUS	intron	15722382	15722577	.	-	.	transcript_id "Ledus.S1G166200.t1"; gene_id "Ledus.S1G166200"
Ledus.S1	AUGUSTUS	CDS	15722578	15723120	0.48	-	0	transcript_id "Ledus.S1G166200.t1"; gene_id "Ledus.S1G166200"
Ledus.S1	AUGUSTUS	exon	15722578	15723120	.	-	.	transcript_id "Ledus.S1G166200.t1"; gene_id "Ledus.S1G166200"
Ledus.S1	AUGUSTUS	start_codon	15723118	15723120	.	-	0	transcript_id "Ledus.S1G166200.t1"; gene_id "Ledus.S1G166200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5588.t1 is derived from g3027.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25283582	25283863	.	-	.	Ledus.S1G300900
Ledus.S1	AUGUSTUS	transcript	25283582	25283863	.	-	.	transcript_id "Ledus.S1G300900.t1"; gene_id "Ledus.S1G300900"
Ledus.S1	AUGUSTUS	stop_codon	25283579	25283581	.	-	0	transcript_id "Ledus.S1G300900.t1"; gene_id "Ledus.S1G300900"
Ledus.S1	AUGUSTUS	CDS	25283582	25283863	0.69	-	0	transcript_id "Ledus.S1G300900.t1"; gene_id "Ledus.S1G300900"
Ledus.S1	AUGUSTUS	exon	25283582	25283863	.	-	.	transcript_id "Ledus.S1G300900.t1"; gene_id "Ledus.S1G300900"
Ledus.S1	AUGUSTUS	start_codon	25283861	25283863	.	-	0	transcript_id "Ledus.S1G300900.t1"; gene_id "Ledus.S1G300900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2647.t1 is derived from g80.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1143326	1143967	.	-	.	Ledus.S1G006800
Ledus.S1	AUGUSTUS	transcript	1143326	1143967	.	-	.	transcript_id "Ledus.S1G006800.t1"; gene_id "Ledus.S1G006800"
Ledus.S1	AUGUSTUS	stop_codon	1143323	1143325	.	-	0	transcript_id "Ledus.S1G006800.t1"; gene_id "Ledus.S1G006800"
Ledus.S1	AUGUSTUS	CDS	1143326	1143643	0.7	-	0	transcript_id "Ledus.S1G006800.t1"; gene_id "Ledus.S1G006800"
Ledus.S1	AUGUSTUS	exon	1143326	1143643	.	-	.	transcript_id "Ledus.S1G006800.t1"; gene_id "Ledus.S1G006800"
Ledus.S1	AUGUSTUS	intron	1143644	1143772	.	-	.	transcript_id "Ledus.S1G006800.t1"; gene_id "Ledus.S1G006800"
Ledus.S1	AUGUSTUS	CDS	1143773	1143967	0.65	-	0	transcript_id "Ledus.S1G006800.t1"; gene_id "Ledus.S1G006800"
Ledus.S1	AUGUSTUS	exon	1143773	1143967	.	-	.	transcript_id "Ledus.S1G006800.t1"; gene_id "Ledus.S1G006800"
Ledus.S1	AUGUSTUS	start_codon	1143965	1143967	.	-	0	transcript_id "Ledus.S1G006800.t1"; gene_id "Ledus.S1G006800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4629.t1 is derived from g2066.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18366174	18367952	.	+	.	Ledus.S1G205000
Ledus.S1	AUGUSTUS	transcript	18366174	18367952	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	start_codon	18366174	18366176	.	+	0	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	CDS	18366174	18366243	1	+	0	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	exon	18366174	18366243	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	intron	18366244	18366333	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	CDS	18366334	18366419	1	+	2	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	exon	18366334	18366419	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	intron	18366420	18366532	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	CDS	18366533	18366609	1	+	0	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	exon	18366533	18366609	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	intron	18366610	18366691	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	CDS	18366692	18366797	1	+	1	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	exon	18366692	18366797	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	intron	18366798	18366890	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	CDS	18366891	18366983	1	+	0	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	exon	18366891	18366983	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	intron	18366984	18367055	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	CDS	18367056	18367121	1	+	0	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	exon	18367056	18367121	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	intron	18367122	18367207	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	CDS	18367208	18367353	1	+	0	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	exon	18367208	18367353	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	intron	18367354	18367446	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	CDS	18367447	18367555	1	+	1	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	exon	18367447	18367555	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	intron	18367556	18367640	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	CDS	18367641	18367705	1	+	0	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	exon	18367641	18367705	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	intron	18367706	18367801	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	CDS	18367802	18367952	0.97	+	1	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	exon	18367802	18367952	.	+	.	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
Ledus.S1	AUGUSTUS	stop_codon	18367953	18367955	.	+	0	transcript_id "Ledus.S1G205000.t1"; gene_id "Ledus.S1G205000"
# This transcript jg4865.t2 is derived from g2303.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4866.t1 is derived from g2304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20436918	20438042	.	+	.	Ledus.S1G228700
Ledus.S1	AUGUSTUS	transcript	20436918	20438042	.	+	.	transcript_id "Ledus.S1G228700.t1"; gene_id "Ledus.S1G228700"
Ledus.S1	AUGUSTUS	start_codon	20436918	20436920	.	+	0	transcript_id "Ledus.S1G228700.t1"; gene_id "Ledus.S1G228700"
Ledus.S1	AUGUSTUS	CDS	20436918	20438042	0.68	+	0	transcript_id "Ledus.S1G228700.t1"; gene_id "Ledus.S1G228700"
Ledus.S1	AUGUSTUS	exon	20436918	20438042	.	+	.	transcript_id "Ledus.S1G228700.t1"; gene_id "Ledus.S1G228700"
Ledus.S1	AUGUSTUS	stop_codon	20438043	20438045	.	+	0	transcript_id "Ledus.S1G228700.t1"; gene_id "Ledus.S1G228700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2428.t1 is derived from g9291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18062417	18063128	.	+	.	Ledus.S2G231000
Ledus.S2	AUGUSTUS	transcript	18062417	18063128	.	+	.	transcript_id "Ledus.S2G231000.t1"; gene_id "Ledus.S2G231000"
Ledus.S2	AUGUSTUS	start_codon	18062417	18062419	.	+	0	transcript_id "Ledus.S2G231000.t1"; gene_id "Ledus.S2G231000"
Ledus.S2	AUGUSTUS	CDS	18062417	18062561	0.82	+	0	transcript_id "Ledus.S2G231000.t1"; gene_id "Ledus.S2G231000"
Ledus.S2	AUGUSTUS	exon	18062417	18062561	.	+	.	transcript_id "Ledus.S2G231000.t1"; gene_id "Ledus.S2G231000"
Ledus.S2	AUGUSTUS	intron	18062562	18062649	.	+	.	transcript_id "Ledus.S2G231000.t1"; gene_id "Ledus.S2G231000"
Ledus.S2	AUGUSTUS	CDS	18062650	18063128	0.8	+	2	transcript_id "Ledus.S2G231000.t1"; gene_id "Ledus.S2G231000"
Ledus.S2	AUGUSTUS	exon	18062650	18063128	.	+	.	transcript_id "Ledus.S2G231000.t1"; gene_id "Ledus.S2G231000"
Ledus.S2	AUGUSTUS	stop_codon	18063129	18063131	.	+	0	transcript_id "Ledus.S2G231000.t1"; gene_id "Ledus.S2G231000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5068.t1 is derived from g2507.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21436199	21438756	.	+	.	Ledus.S1G248900
Ledus.S1	AUGUSTUS	transcript	21436199	21438756	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	start_codon	21436199	21436201	.	+	0	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	CDS	21436199	21436481	0.66	+	0	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	exon	21436199	21436481	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	intron	21436482	21436654	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	CDS	21436655	21436905	0.98	+	2	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	exon	21436655	21436905	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	intron	21436906	21437038	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	CDS	21437039	21437235	1	+	0	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	exon	21437039	21437235	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	intron	21437236	21437487	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	CDS	21437488	21437632	1	+	1	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	exon	21437488	21437632	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	intron	21437633	21437726	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	CDS	21437727	21437987	1	+	0	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	exon	21437727	21437987	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	intron	21437988	21438137	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	CDS	21438138	21438243	1	+	0	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	exon	21438138	21438243	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	intron	21438244	21438433	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	CDS	21438434	21438756	1	+	2	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	exon	21438434	21438756	.	+	.	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
Ledus.S1	AUGUSTUS	stop_codon	21438757	21438759	.	+	0	transcript_id "Ledus.S1G248900.t1"; gene_id "Ledus.S1G248900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10600.t1 is derived from g11630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16297072	16298187	.	-	.	Ledus.S3G207700
Ledus.S3	AUGUSTUS	transcript	16297072	16298187	.	-	.	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	stop_codon	16297069	16297071	.	-	0	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	CDS	16297072	16297169	0.73	-	2	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	exon	16297072	16297169	.	-	.	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	intron	16297170	16297284	.	-	.	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	CDS	16297285	16297354	0.71	-	0	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	exon	16297285	16297354	.	-	.	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	intron	16297355	16297450	.	-	.	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	CDS	16297451	16297585	1	-	0	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	exon	16297451	16297585	.	-	.	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	intron	16297586	16297741	.	-	.	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	CDS	16297742	16297799	0.94	-	1	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	exon	16297742	16297799	.	-	.	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	intron	16297800	16297901	.	-	.	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	CDS	16297902	16298047	1	-	0	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	exon	16297902	16298047	.	-	.	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	intron	16298048	16298184	.	-	.	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	CDS	16298185	16298187	1	-	0	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	exon	16298185	16298187	.	-	.	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
Ledus.S3	AUGUSTUS	start_codon	16298185	16298187	.	-	0	transcript_id "Ledus.S3G207700.t1"; gene_id "Ledus.S3G207700"
# This transcript jg6235.t2 is derived from g3678.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6236.t1 is derived from g3679.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29795649	29796121	.	+	.	Ledus.S1G365700
Ledus.S1	AUGUSTUS	transcript	29795649	29796121	.	+	.	transcript_id "Ledus.S1G365700.t1"; gene_id "Ledus.S1G365700"
Ledus.S1	AUGUSTUS	start_codon	29795649	29795651	.	+	0	transcript_id "Ledus.S1G365700.t1"; gene_id "Ledus.S1G365700"
Ledus.S1	AUGUSTUS	CDS	29795649	29795889	0.8	+	0	transcript_id "Ledus.S1G365700.t1"; gene_id "Ledus.S1G365700"
Ledus.S1	AUGUSTUS	exon	29795649	29795889	.	+	.	transcript_id "Ledus.S1G365700.t1"; gene_id "Ledus.S1G365700"
Ledus.S1	AUGUSTUS	intron	29795890	29796068	.	+	.	transcript_id "Ledus.S1G365700.t1"; gene_id "Ledus.S1G365700"
Ledus.S1	AUGUSTUS	CDS	29796069	29796121	0.59	+	2	transcript_id "Ledus.S1G365700.t1"; gene_id "Ledus.S1G365700"
Ledus.S1	AUGUSTUS	exon	29796069	29796121	.	+	.	transcript_id "Ledus.S1G365700.t1"; gene_id "Ledus.S1G365700"
Ledus.S1	AUGUSTUS	stop_codon	29796122	29796124	.	+	0	transcript_id "Ledus.S1G365700.t1"; gene_id "Ledus.S1G365700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9475.t1 is derived from g10505.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7242475	7243326	.	+	.	Ledus.S3G095200
Ledus.S3	AUGUSTUS	transcript	7242475	7243326	.	+	.	transcript_id "Ledus.S3G095200.t1"; gene_id "Ledus.S3G095200"
Ledus.S3	AUGUSTUS	start_codon	7242475	7242477	.	+	0	transcript_id "Ledus.S3G095200.t1"; gene_id "Ledus.S3G095200"
Ledus.S3	AUGUSTUS	CDS	7242475	7243326	0.98	+	0	transcript_id "Ledus.S3G095200.t1"; gene_id "Ledus.S3G095200"
Ledus.S3	AUGUSTUS	exon	7242475	7243326	.	+	.	transcript_id "Ledus.S3G095200.t1"; gene_id "Ledus.S3G095200"
Ledus.S3	AUGUSTUS	stop_codon	7243327	7243329	.	+	0	transcript_id "Ledus.S3G095200.t1"; gene_id "Ledus.S3G095200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2668.t1 is derived from g101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1515729	1520933	.	+	.	Ledus.S1G008900
Ledus.S1	AUGUSTUS	transcript	1515729	1520933	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	start_codon	1515729	1515731	.	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1515729	1516955	0.94	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1515729	1516955	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1516956	1517053	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1517054	1517257	1	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1517054	1517257	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1517258	1517333	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1517334	1517438	0.97	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1517334	1517438	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1517439	1517547	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1517548	1517613	0.97	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1517548	1517613	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1517614	1517699	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1517700	1517864	1	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1517700	1517864	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1517865	1517931	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1517932	1518006	1	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1517932	1518006	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1518007	1518130	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1518131	1518285	1	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1518131	1518285	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1518286	1518389	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1518390	1518525	1	+	1	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1518390	1518525	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1518526	1518635	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1518636	1518705	1	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1518636	1518705	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1518706	1518811	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1518812	1518939	0.99	+	2	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1518812	1518939	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1518940	1519023	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1519024	1519080	1	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1519024	1519080	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1519081	1519254	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1519255	1519440	1	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1519255	1519440	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1519441	1519532	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1519533	1519625	1	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1519533	1519625	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1519626	1519709	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1519710	1519795	1	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1519710	1519795	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1519796	1519872	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1519873	1519939	1	+	1	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1519873	1519939	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1519940	1520037	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1520038	1520104	1	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1520038	1520104	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1520105	1520190	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1520191	1520327	0.98	+	2	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1520191	1520327	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1520328	1520440	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1520441	1520541	0.84	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1520441	1520541	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1520542	1520618	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1520619	1520685	0.69	+	1	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1520619	1520685	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	intron	1520686	1520789	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	CDS	1520790	1520933	0.61	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	exon	1520790	1520933	.	+	.	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
Ledus.S1	AUGUSTUS	stop_codon	1520934	1520936	.	+	0	transcript_id "Ledus.S1G008900.t1"; gene_id "Ledus.S1G008900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10473.t1 is derived from g11503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15479361	15480356	.	-	.	Ledus.S3G195000
Ledus.S3	AUGUSTUS	transcript	15479361	15480356	.	-	.	transcript_id "Ledus.S3G195000.t1"; gene_id "Ledus.S3G195000"
Ledus.S3	AUGUSTUS	stop_codon	15479358	15479360	.	-	0	transcript_id "Ledus.S3G195000.t1"; gene_id "Ledus.S3G195000"
Ledus.S3	AUGUSTUS	CDS	15479361	15480356	0.3	-	0	transcript_id "Ledus.S3G195000.t1"; gene_id "Ledus.S3G195000"
Ledus.S3	AUGUSTUS	exon	15479361	15480356	.	-	.	transcript_id "Ledus.S3G195000.t1"; gene_id "Ledus.S3G195000"
Ledus.S3	AUGUSTUS	start_codon	15480354	15480356	.	-	0	transcript_id "Ledus.S3G195000.t1"; gene_id "Ledus.S3G195000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12639.t1 is derived from g6261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13559683	13564815	.	+	.	Ledus.S4G179500
Ledus.S4	AUGUSTUS	transcript	13559683	13564815	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	start_codon	13559683	13559685	.	+	0	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	CDS	13559683	13559757	0.31	+	0	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	exon	13559683	13559757	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	intron	13559758	13560010	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	CDS	13560011	13560137	0.61	+	0	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	exon	13560011	13560137	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	intron	13560138	13560221	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	CDS	13560222	13560369	0.44	+	2	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	exon	13560222	13560369	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	intron	13560370	13560537	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	CDS	13560538	13560699	0.72	+	1	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	exon	13560538	13560699	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	intron	13560700	13560790	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	CDS	13560791	13560929	0.4	+	1	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	exon	13560791	13560929	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	intron	13560930	13561087	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	CDS	13561088	13564013	0.41	+	0	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	exon	13561088	13564013	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	intron	13564014	13564456	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	CDS	13564457	13564815	1	+	2	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	exon	13564457	13564815	.	+	.	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
Ledus.S4	AUGUSTUS	stop_codon	13564816	13564818	.	+	0	transcript_id "Ledus.S4G179500.t1"; gene_id "Ledus.S4G179500"
# This transcript jg10132.t2 is derived from g11162.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10133.t1 is derived from g11163.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12965543	12968038	.	+	.	Ledus.S3G161000
Ledus.S3	AUGUSTUS	transcript	12965543	12968038	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	start_codon	12965543	12965545	.	+	0	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12965543	12965616	0.52	+	0	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12965543	12965616	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	intron	12965617	12965788	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12965789	12966435	0.97	+	1	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12965789	12966435	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	intron	12966436	12966537	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12966538	12966590	1	+	2	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12966538	12966590	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	intron	12966591	12966734	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12966735	12966772	1	+	0	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12966735	12966772	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	intron	12966773	12966942	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12966943	12967279	1	+	1	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12966943	12967279	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	intron	12967280	12967410	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12967411	12967730	1	+	0	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12967411	12967730	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	intron	12967731	12967893	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12967894	12968038	0.89	+	1	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12967894	12968038	.	+	.	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	stop_codon	12968039	12968041	.	+	0	transcript_id "Ledus.S3G161000.t1"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	transcript	12965543	12968038	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	start_codon	12965543	12965545	.	+	0	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12965543	12965616	0.5	+	0	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12965543	12965616	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	intron	12965617	12965788	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12965789	12966435	0.99	+	1	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12965789	12966435	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	intron	12966436	12966537	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12966538	12966590	1	+	2	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12966538	12966590	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	intron	12966591	12966734	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12966735	12966772	1	+	0	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12966735	12966772	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	intron	12966773	12966936	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12966937	12967279	1	+	1	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12966937	12967279	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	intron	12967280	12967410	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12967411	12967730	1	+	0	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12967411	12967730	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	intron	12967731	12967893	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	CDS	12967894	12968038	0.86	+	1	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	exon	12967894	12968038	.	+	.	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
Ledus.S3	AUGUSTUS	stop_codon	12968039	12968041	.	+	0	transcript_id "Ledus.S3G161000.t2"; gene_id "Ledus.S3G161000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10158.t1 is derived from g11188.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13388854	13390721	.	+	.	Ledus.S3G163500
Ledus.S3	AUGUSTUS	transcript	13388854	13390721	.	+	.	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	start_codon	13388854	13388856	.	+	0	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	CDS	13388854	13388929	0.9	+	0	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	exon	13388854	13388929	.	+	.	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	intron	13388930	13389873	.	+	.	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	CDS	13389874	13390065	0.99	+	2	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	exon	13389874	13390065	.	+	.	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	intron	13390066	13390193	.	+	.	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	CDS	13390194	13390491	0.98	+	2	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	exon	13390194	13390491	.	+	.	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	intron	13390492	13390717	.	+	.	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	CDS	13390718	13390721	0.98	+	1	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	exon	13390718	13390721	.	+	.	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
Ledus.S3	AUGUSTUS	stop_codon	13390722	13390724	.	+	0	transcript_id "Ledus.S3G163500.t1"; gene_id "Ledus.S3G163500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8702.t1 is derived from g9732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1479072	1481990	.	+	.	Ledus.S3G017900
Ledus.S3	AUGUSTUS	transcript	1479072	1481990	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	start_codon	1479072	1479074	.	+	0	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1479072	1479216	0.99	+	0	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1479072	1479216	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	intron	1479217	1479370	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1479371	1479405	1	+	2	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1479371	1479405	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	intron	1479406	1479523	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1479524	1479661	0.94	+	0	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1479524	1479661	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	intron	1479662	1479863	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1479864	1479932	1	+	0	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1479864	1479932	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	intron	1479933	1480107	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1480108	1480265	0.68	+	0	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1480108	1480265	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	intron	1480266	1480383	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1480384	1480450	0.68	+	1	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1480384	1480450	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	intron	1480451	1480597	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1480598	1480651	1	+	0	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1480598	1480651	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	intron	1480652	1480806	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1480807	1480895	1	+	0	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1480807	1480895	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	intron	1480896	1481036	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1481037	1481153	1	+	1	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1481037	1481153	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	intron	1481154	1481280	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1481281	1481417	1	+	1	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1481281	1481417	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	intron	1481418	1481497	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1481498	1481576	1	+	2	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1481498	1481576	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	intron	1481577	1481661	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1481662	1481718	1	+	1	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1481662	1481718	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	intron	1481719	1481797	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	CDS	1481798	1481990	0.55	+	1	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	exon	1481798	1481990	.	+	.	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
Ledus.S3	AUGUSTUS	stop_codon	1481991	1481993	.	+	0	transcript_id "Ledus.S3G017900.t1"; gene_id "Ledus.S3G017900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6841.t1 is derived from g4285.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34579836	34582052	.	+	.	Ledus.S1G426200
Ledus.S1	AUGUSTUS	transcript	34579836	34582052	.	+	.	transcript_id "Ledus.S1G426200.t1"; gene_id "Ledus.S1G426200"
Ledus.S1	AUGUSTUS	start_codon	34579836	34579838	.	+	0	transcript_id "Ledus.S1G426200.t1"; gene_id "Ledus.S1G426200"
Ledus.S1	AUGUSTUS	CDS	34579836	34582052	0.47	+	0	transcript_id "Ledus.S1G426200.t1"; gene_id "Ledus.S1G426200"
Ledus.S1	AUGUSTUS	exon	34579836	34582052	.	+	.	transcript_id "Ledus.S1G426200.t1"; gene_id "Ledus.S1G426200"
Ledus.S1	AUGUSTUS	stop_codon	34582053	34582055	.	+	0	transcript_id "Ledus.S1G426200.t1"; gene_id "Ledus.S1G426200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12971.t1 is derived from g6781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1366798	1367097	.	+	.	Ledus.S6G003300
Ledus.S6	AUGUSTUS	transcript	1366798	1367097	.	+	.	transcript_id "Ledus.S6G003300.t1"; gene_id "Ledus.S6G003300"
Ledus.S6	AUGUSTUS	start_codon	1366798	1366800	.	+	0	transcript_id "Ledus.S6G003300.t1"; gene_id "Ledus.S6G003300"
Ledus.S6	AUGUSTUS	CDS	1366798	1367097	0.87	+	0	transcript_id "Ledus.S6G003300.t1"; gene_id "Ledus.S6G003300"
Ledus.S6	AUGUSTUS	exon	1366798	1367097	.	+	.	transcript_id "Ledus.S6G003300.t1"; gene_id "Ledus.S6G003300"
Ledus.S6	AUGUSTUS	stop_codon	1367098	1367100	.	+	0	transcript_id "Ledus.S6G003300.t1"; gene_id "Ledus.S6G003300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6024.t1 is derived from g3467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28476075	28479143	.	+	.	Ledus.S1G344500
Ledus.S1	AUGUSTUS	transcript	28476075	28479143	.	+	.	transcript_id "Ledus.S1G344500.t1"; gene_id "Ledus.S1G344500"
Ledus.S1	AUGUSTUS	start_codon	28476075	28476077	.	+	0	transcript_id "Ledus.S1G344500.t1"; gene_id "Ledus.S1G344500"
Ledus.S1	AUGUSTUS	CDS	28476075	28479143	1	+	0	transcript_id "Ledus.S1G344500.t1"; gene_id "Ledus.S1G344500"
Ledus.S1	AUGUSTUS	exon	28476075	28479143	.	+	.	transcript_id "Ledus.S1G344500.t1"; gene_id "Ledus.S1G344500"
Ledus.S1	AUGUSTUS	stop_codon	28479144	28479146	.	+	0	transcript_id "Ledus.S1G344500.t1"; gene_id "Ledus.S1G344500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9334.t1 is derived from g10364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6183273	6187056	.	-	.	Ledus.S3G081100
Ledus.S3	AUGUSTUS	transcript	6183273	6187056	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	stop_codon	6183270	6183272	.	-	0	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6183273	6183332	1	-	0	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6183273	6183332	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6183333	6183426	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6183427	6183474	1	-	0	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6183427	6183474	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6183475	6183580	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6183581	6183684	0.97	-	2	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6183581	6183684	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6183685	6183761	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6183762	6183856	1	-	1	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6183762	6183856	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6183857	6183956	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6183957	6184002	1	-	2	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6183957	6184002	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6184003	6184106	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6184107	6184147	0.99	-	1	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6184107	6184147	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6184148	6184456	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6184457	6184535	1	-	2	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6184457	6184535	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6184536	6184714	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6184715	6184775	1	-	0	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6184715	6184775	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6184776	6184883	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6184884	6185002	1	-	2	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6184884	6185002	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6185003	6185177	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6185178	6185487	0.77	-	0	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6185178	6185487	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6185488	6185696	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6185697	6185714	1	-	0	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6185697	6185714	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6185715	6185910	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6185911	6185968	1	-	1	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6185911	6185968	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6185969	6186090	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6186091	6186202	1	-	2	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6186091	6186202	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	intron	6186203	6186854	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	CDS	6186855	6187056	0.79	-	0	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	exon	6186855	6187056	.	-	.	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
Ledus.S3	AUGUSTUS	start_codon	6187054	6187056	.	-	0	transcript_id "Ledus.S3G081100.t1"; gene_id "Ledus.S3G081100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12308.t1 is derived from g5929.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11152025	11152417	.	-	.	Ledus.S4G146400
Ledus.S4	AUGUSTUS	transcript	11152025	11152417	.	-	.	transcript_id "Ledus.S4G146400.t1"; gene_id "Ledus.S4G146400"
Ledus.S4	AUGUSTUS	stop_codon	11152022	11152024	.	-	0	transcript_id "Ledus.S4G146400.t1"; gene_id "Ledus.S4G146400"
Ledus.S4	AUGUSTUS	CDS	11152025	11152417	0.92	-	0	transcript_id "Ledus.S4G146400.t1"; gene_id "Ledus.S4G146400"
Ledus.S4	AUGUSTUS	exon	11152025	11152417	.	-	.	transcript_id "Ledus.S4G146400.t1"; gene_id "Ledus.S4G146400"
Ledus.S4	AUGUSTUS	start_codon	11152415	11152417	.	-	0	transcript_id "Ledus.S4G146400.t1"; gene_id "Ledus.S4G146400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg483.t1 is derived from g7344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2836928	2840789	.	-	.	Ledus.S2G036500
Ledus.S2	AUGUSTUS	transcript	2836928	2840789	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	stop_codon	2836925	2836927	.	-	0	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2836928	2837139	0.86	-	2	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2836928	2837139	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2837140	2837229	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2837230	2837444	1	-	1	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2837230	2837444	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2837445	2837530	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2837531	2837805	1	-	0	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2837531	2837805	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2837806	2837913	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2837914	2838037	0.8	-	1	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2837914	2838037	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2838038	2838145	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2838146	2838289	0.99	-	1	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2838146	2838289	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2838290	2838373	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2838374	2838489	0.98	-	0	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2838374	2838489	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2838490	2838605	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2838606	2838687	1	-	1	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2838606	2838687	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2838688	2838865	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2838866	2839020	1	-	0	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2838866	2839020	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2839021	2839120	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2839121	2839266	1	-	2	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2839121	2839266	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2839267	2839392	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2839393	2839579	1	-	0	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2839393	2839579	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2839580	2839682	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2839683	2839855	1	-	2	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2839683	2839855	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2839856	2839980	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2839981	2840034	1	-	2	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2839981	2840034	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2840035	2840128	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2840129	2840200	1	-	2	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2840129	2840200	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	intron	2840201	2840461	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	CDS	2840462	2840789	0.71	-	0	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	exon	2840462	2840789	.	-	.	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
Ledus.S2	AUGUSTUS	start_codon	2840787	2840789	.	-	0	transcript_id "Ledus.S2G036500.t1"; gene_id "Ledus.S2G036500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4037.t1 is derived from g1473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14278131	14279897	.	+	.	Ledus.S1G145800
Ledus.S1	AUGUSTUS	transcript	14278131	14279897	.	+	.	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	start_codon	14278131	14278133	.	+	0	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	CDS	14278131	14278410	0.17	+	0	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	exon	14278131	14278410	.	+	.	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	intron	14278411	14278749	.	+	.	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	CDS	14278750	14278859	0.27	+	2	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	exon	14278750	14278859	.	+	.	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	intron	14278860	14278995	.	+	.	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	CDS	14278996	14279266	0.44	+	0	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	exon	14278996	14279266	.	+	.	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	intron	14279267	14279392	.	+	.	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	CDS	14279393	14279436	1	+	2	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	exon	14279393	14279436	.	+	.	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	intron	14279437	14279509	.	+	.	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	CDS	14279510	14279641	1	+	0	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	exon	14279510	14279641	.	+	.	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	intron	14279642	14279753	.	+	.	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	CDS	14279754	14279897	1	+	0	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	exon	14279754	14279897	.	+	.	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
Ledus.S1	AUGUSTUS	stop_codon	14279898	14279900	.	+	0	transcript_id "Ledus.S1G145800.t1"; gene_id "Ledus.S1G145800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12389.t1 is derived from g6010.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11591160	11591984	.	-	.	Ledus.S4G154500
Ledus.S4	AUGUSTUS	transcript	11591160	11591984	.	-	.	transcript_id "Ledus.S4G154500.t1"; gene_id "Ledus.S4G154500"
Ledus.S4	AUGUSTUS	stop_codon	11591157	11591159	.	-	0	transcript_id "Ledus.S4G154500.t1"; gene_id "Ledus.S4G154500"
Ledus.S4	AUGUSTUS	CDS	11591160	11591984	0.32	-	0	transcript_id "Ledus.S4G154500.t1"; gene_id "Ledus.S4G154500"
Ledus.S4	AUGUSTUS	exon	11591160	11591984	.	-	.	transcript_id "Ledus.S4G154500.t1"; gene_id "Ledus.S4G154500"
Ledus.S4	AUGUSTUS	start_codon	11591982	11591984	.	-	0	transcript_id "Ledus.S4G154500.t1"; gene_id "Ledus.S4G154500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11361.t1 is derived from g4979.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3819153	3820020	.	-	.	Ledus.S4G051700
Ledus.S4	AUGUSTUS	transcript	3819153	3820020	.	-	.	transcript_id "Ledus.S4G051700.t1"; gene_id "Ledus.S4G051700"
Ledus.S4	AUGUSTUS	stop_codon	3819150	3819152	.	-	0	transcript_id "Ledus.S4G051700.t1"; gene_id "Ledus.S4G051700"
Ledus.S4	AUGUSTUS	CDS	3819153	3819733	0.68	-	2	transcript_id "Ledus.S4G051700.t1"; gene_id "Ledus.S4G051700"
Ledus.S4	AUGUSTUS	exon	3819153	3819733	.	-	.	transcript_id "Ledus.S4G051700.t1"; gene_id "Ledus.S4G051700"
Ledus.S4	AUGUSTUS	intron	3819734	3819974	.	-	.	transcript_id "Ledus.S4G051700.t1"; gene_id "Ledus.S4G051700"
Ledus.S4	AUGUSTUS	CDS	3819975	3820020	0.47	-	0	transcript_id "Ledus.S4G051700.t1"; gene_id "Ledus.S4G051700"
Ledus.S4	AUGUSTUS	exon	3819975	3820020	.	-	.	transcript_id "Ledus.S4G051700.t1"; gene_id "Ledus.S4G051700"
Ledus.S4	AUGUSTUS	start_codon	3820018	3820020	.	-	0	transcript_id "Ledus.S4G051700.t1"; gene_id "Ledus.S4G051700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5282.t1 is derived from g2721.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22844948	22846651	.	+	.	Ledus.S1G270300
Ledus.S1	AUGUSTUS	transcript	22844948	22846651	.	+	.	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	start_codon	22844948	22844950	.	+	0	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	CDS	22844948	22845379	0.83	+	0	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	exon	22844948	22845379	.	+	.	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	intron	22845380	22845513	.	+	.	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	CDS	22845514	22845726	1	+	0	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	exon	22845514	22845726	.	+	.	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	intron	22845727	22845829	.	+	.	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	CDS	22845830	22846220	1	+	0	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	exon	22845830	22846220	.	+	.	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	intron	22846221	22846463	.	+	.	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	CDS	22846464	22846651	1	+	2	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	exon	22846464	22846651	.	+	.	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
Ledus.S1	AUGUSTUS	stop_codon	22846652	22846654	.	+	0	transcript_id "Ledus.S1G270300.t1"; gene_id "Ledus.S1G270300"
# This transcript jg3474.t2 is derived from g909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3475.t1 is derived from g910.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8637767	8641374	.	-	.	Ledus.S1G089600
Ledus.S1	AUGUSTUS	transcript	8637767	8641374	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	stop_codon	8637764	8637766	.	-	0	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8637767	8637780	0.96	-	2	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8637767	8637780	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8637781	8639086	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8639087	8639148	0.95	-	1	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8639087	8639148	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8639149	8639256	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8639257	8639405	0.82	-	0	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8639257	8639405	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8639406	8639518	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8639519	8639662	0.98	-	0	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8639519	8639662	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8639663	8639910	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8639911	8640027	1	-	0	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8639911	8640027	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8640028	8640158	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8640159	8640275	1	-	0	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8640159	8640275	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8640276	8640378	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8640379	8640524	0.96	-	2	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8640379	8640524	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8640525	8640797	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8640798	8640883	1	-	1	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8640798	8640883	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8640884	8641282	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8641283	8641374	1	-	0	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8641283	8641374	.	-	.	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	start_codon	8641372	8641374	.	-	0	transcript_id "Ledus.S1G089600.t1"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	transcript	8637767	8641374	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	stop_codon	8637764	8637766	.	-	0	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8637767	8637780	0.97	-	2	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8637767	8637780	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8637781	8639086	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8639087	8639148	0.96	-	1	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8639087	8639148	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8639149	8639256	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8639257	8639405	0.76	-	0	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8639257	8639405	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8639406	8639518	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8639519	8639662	0.98	-	0	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8639519	8639662	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8639663	8639910	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8639911	8640027	1	-	0	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8639911	8640027	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8640028	8640158	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8640159	8640275	0.98	-	0	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8640159	8640275	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8640276	8640378	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8640379	8640524	0.96	-	2	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8640379	8640524	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8640525	8640797	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8640798	8640883	1	-	1	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8640798	8640883	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8640884	8641162	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8641163	8641241	0.89	-	2	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8641163	8641241	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	intron	8641242	8641310	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	CDS	8641311	8641374	0.9	-	0	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	exon	8641311	8641374	.	-	.	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
Ledus.S1	AUGUSTUS	start_codon	8641372	8641374	.	-	0	transcript_id "Ledus.S1G089600.t2"; gene_id "Ledus.S1G089600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6789.t1 is derived from g4233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34156290	34157272	.	-	.	Ledus.S1G421000
Ledus.S1	AUGUSTUS	transcript	34156290	34157272	.	-	.	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	stop_codon	34156287	34156289	.	-	0	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	CDS	34156290	34156439	1	-	0	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	exon	34156290	34156439	.	-	.	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	intron	34156440	34156521	.	-	.	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	CDS	34156522	34156651	1	-	1	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	exon	34156522	34156651	.	-	.	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	intron	34156652	34156746	.	-	.	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	CDS	34156747	34156895	1	-	0	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	exon	34156747	34156895	.	-	.	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	intron	34156896	34156999	.	-	.	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	CDS	34157000	34157272	0.76	-	0	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	exon	34157000	34157272	.	-	.	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
Ledus.S1	AUGUSTUS	start_codon	34157270	34157272	.	-	0	transcript_id "Ledus.S1G421000.t1"; gene_id "Ledus.S1G421000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5326.t1 is derived from g2765.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23361230	23365232	.	-	.	Ledus.S1G274700
Ledus.S1	AUGUSTUS	transcript	23361230	23365232	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	stop_codon	23361227	23361229	.	-	0	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23361230	23361605	0.87	-	1	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23361230	23361605	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23361606	23361700	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23361701	23361924	1	-	0	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23361701	23361924	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23361925	23362134	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23362135	23362317	1	-	0	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23362135	23362317	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23362318	23362400	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23362401	23362493	1	-	0	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23362401	23362493	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23362494	23362619	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23362620	23362778	1	-	0	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23362620	23362778	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23362779	23362914	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23362915	23363085	1	-	0	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23362915	23363085	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23363086	23363201	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23363202	23363310	0.97	-	1	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23363202	23363310	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23363311	23363499	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23363500	23363552	0.96	-	0	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23363500	23363552	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23363553	23363704	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23363705	23363773	0.96	-	0	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23363705	23363773	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23363774	23363971	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23363972	23364092	1	-	1	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23363972	23364092	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23364093	23364184	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23364185	23364243	1	-	0	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23364185	23364243	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23364244	23364325	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23364326	23364416	1	-	1	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23364326	23364416	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23364417	23364496	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23364497	23364585	0.99	-	0	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23364497	23364585	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23364586	23364724	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23364725	23364816	1	-	2	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23364725	23364816	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23364817	23364918	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23364919	23365017	1	-	2	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23364919	23365017	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23365018	23365105	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23365106	23365232	1	-	0	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23365106	23365232	.	-	.	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	start_codon	23365230	23365232	.	-	0	transcript_id "Ledus.S1G274700.t1"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	transcript	23361230	23365232	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	stop_codon	23361227	23361229	.	-	0	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23361230	23361605	0.94	-	1	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23361230	23361605	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23361606	23361700	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23361701	23361924	1	-	0	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23361701	23361924	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23361925	23362134	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23362135	23362317	1	-	0	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23362135	23362317	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23362318	23362400	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23362401	23362493	0.98	-	0	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23362401	23362493	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23362494	23362619	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23362620	23362778	1	-	0	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23362620	23362778	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23362779	23362914	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23362915	23363085	1	-	0	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23362915	23363085	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23363086	23363201	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23363202	23363310	0.92	-	1	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23363202	23363310	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23363311	23363499	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23363500	23363552	0.9	-	0	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23363500	23363552	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23363553	23363704	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23363705	23363773	0.93	-	0	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23363705	23363773	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23363774	23363971	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23363972	23364092	1	-	1	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23363972	23364092	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23364093	23364184	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23364185	23364243	1	-	0	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23364185	23364243	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23364244	23364325	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23364326	23364416	0.95	-	1	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23364326	23364416	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23364417	23364536	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23364537	23364637	0.95	-	0	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23364537	23364637	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23364638	23364724	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23364725	23364816	1	-	2	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23364725	23364816	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23364817	23364918	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23364919	23365017	1	-	2	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23364919	23365017	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	intron	23365018	23365105	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	CDS	23365106	23365232	0.99	-	0	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	exon	23365106	23365232	.	-	.	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
Ledus.S1	AUGUSTUS	start_codon	23365230	23365232	.	-	0	transcript_id "Ledus.S1G274700.t2"; gene_id "Ledus.S1G274700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2473.t1 is derived from g9336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18359180	18364942	.	+	.	Ledus.S2G235500
Ledus.S2	AUGUSTUS	transcript	18359180	18364942	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	start_codon	18359180	18359182	.	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18359180	18359264	0.95	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18359180	18359264	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18359265	18359352	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18359353	18359438	1	+	2	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18359353	18359438	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18359439	18359536	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18359537	18359614	0.99	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18359537	18359614	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18359615	18359719	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18359720	18359899	1	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18359720	18359899	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18359900	18359988	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18359989	18360039	0.98	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18359989	18360039	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18360040	18360159	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18360160	18360291	1	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18360160	18360291	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18360292	18360382	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18360383	18360508	0.99	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18360383	18360508	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18360509	18360611	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18360612	18360689	1	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18360612	18360689	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18360690	18360773	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18360774	18360860	1	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18360774	18360860	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18360861	18361108	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18361109	18361234	1	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18361109	18361234	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18361235	18361327	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18361328	18361411	1	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18361328	18361411	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18361412	18361516	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18361517	18361609	1	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18361517	18361609	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18361610	18361755	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18361756	18361971	1	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18361756	18361971	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18361972	18362050	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18362051	18362126	1	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18362051	18362126	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18362127	18362202	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18362203	18362306	1	+	2	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18362203	18362306	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18362307	18362428	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18362429	18362688	0.71	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18362429	18362688	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18362689	18362790	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18362791	18362877	0.93	+	1	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18362791	18362877	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18362878	18362987	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18362988	18363215	1	+	1	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18362988	18363215	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18363216	18363303	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18363304	18363382	1	+	1	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18363304	18363382	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18363383	18363473	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18363474	18363537	1	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18363474	18363537	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18363538	18363627	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18363628	18363688	0.97	+	2	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18363628	18363688	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18363689	18363775	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18363776	18363780	1	+	1	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18363776	18363780	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18363781	18363962	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18363963	18364459	1	+	2	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18363963	18364459	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	intron	18364460	18364546	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	CDS	18364547	18364942	0.92	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	exon	18364547	18364942	.	+	.	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
Ledus.S2	AUGUSTUS	stop_codon	18364943	18364945	.	+	0	transcript_id "Ledus.S2G235500.t1"; gene_id "Ledus.S2G235500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5905.t1 is derived from g3348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27729112	27730995	.	-	.	Ledus.S1G332600
Ledus.S1	AUGUSTUS	transcript	27729112	27730995	.	-	.	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	stop_codon	27729109	27729111	.	-	0	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	CDS	27729112	27729240	0.79	-	0	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	exon	27729112	27729240	.	-	.	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	intron	27729241	27729392	.	-	.	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	CDS	27729393	27729436	0.99	-	2	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	exon	27729393	27729436	.	-	.	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	intron	27729437	27729519	.	-	.	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	CDS	27729520	27729586	1	-	0	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	exon	27729520	27729586	.	-	.	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	intron	27729587	27729666	.	-	.	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	CDS	27729667	27730499	0.98	-	2	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	exon	27729667	27730499	.	-	.	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	intron	27730500	27730574	.	-	.	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	CDS	27730575	27730995	0.98	-	0	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	exon	27730575	27730995	.	-	.	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
Ledus.S1	AUGUSTUS	start_codon	27730993	27730995	.	-	0	transcript_id "Ledus.S1G332600.t1"; gene_id "Ledus.S1G332600"
# This transcript jg681.t2 is derived from g7542.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg682.t1 is derived from g7543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4168897	4173077	.	-	.	Ledus.S2G056400
Ledus.S2	AUGUSTUS	transcript	4168897	4172008	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	stop_codon	4168894	4168896	.	-	0	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4168897	4169457	0.75	-	0	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4168897	4169457	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4169458	4169573	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4169574	4169727	0.82	-	1	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4169574	4169727	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4169728	4169845	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4169846	4170378	1	-	0	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4169846	4170378	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4170379	4170533	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4170534	4170627	0.99	-	1	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4170534	4170627	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4170628	4170750	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4170751	4170933	1	-	1	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4170751	4170933	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4170934	4171041	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4171042	4171283	1	-	0	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4171042	4171283	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4171284	4171495	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4171496	4171624	1	-	0	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4171496	4171624	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4171625	4171819	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4171820	4172008	0.89	-	0	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4171820	4172008	.	-	.	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	start_codon	4172006	4172008	.	-	0	transcript_id "Ledus.S2G056400.t1"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	transcript	4172194	4173077	.	-	.	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	stop_codon	4172191	4172193	.	-	0	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4172194	4172208	0.92	-	0	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4172194	4172208	.	-	.	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4172209	4172306	.	-	.	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4172307	4172450	0.97	-	0	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4172307	4172450	.	-	.	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4172451	4172569	.	-	.	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4172570	4172741	0.97	-	1	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4172570	4172741	.	-	.	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4172742	4172947	.	-	.	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4172948	4172978	0.78	-	2	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4172948	4172978	.	-	.	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4172979	4173064	.	-	.	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4173065	4173077	0.83	-	0	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4173065	4173077	.	-	.	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	start_codon	4173075	4173077	.	-	0	transcript_id "Ledus.S2G056400.t2"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	transcript	4168897	4173077	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	stop_codon	4168894	4168896	.	-	0	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4168897	4169457	0.69	-	0	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4168897	4169457	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4169458	4169573	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4169574	4169727	0.89	-	1	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4169574	4169727	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4169728	4169845	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4169846	4170378	1	-	0	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4169846	4170378	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4170379	4170533	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4170534	4170627	0.99	-	1	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4170534	4170627	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4170628	4170750	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4170751	4170933	0.99	-	1	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4170751	4170933	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4170934	4171041	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4171042	4171283	0.98	-	0	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4171042	4171283	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4171284	4171495	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4171496	4171624	1	-	0	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4171496	4171624	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4171625	4171819	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4171820	4171986	0.76	-	2	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4171820	4171986	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4171987	4172109	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4172110	4172203	0.66	-	0	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4172110	4172203	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4172204	4172306	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4172307	4172450	0.93	-	0	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4172307	4172450	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4172451	4172569	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4172570	4172741	0.98	-	1	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4172570	4172741	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4172742	4172947	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4172948	4172978	0.74	-	2	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4172948	4172978	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	intron	4172979	4173064	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	CDS	4173065	4173077	0.83	-	0	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	exon	4173065	4173077	.	-	.	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
Ledus.S2	AUGUSTUS	start_codon	4173075	4173077	.	-	0	transcript_id "Ledus.S2G056400.t3"; gene_id "Ledus.S2G056400"
# This transcript jg1989.t2 is derived from g8852.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1990.t1 is derived from g8853.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14085895	14089710	.	-	.	Ledus.S2G187200
Ledus.S2	AUGUSTUS	transcript	14085895	14089710	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	stop_codon	14085892	14085894	.	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14085895	14086047	0.97	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14085895	14086047	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14086048	14086149	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14086150	14086200	1	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14086150	14086200	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14086201	14086319	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14086320	14086406	1	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14086320	14086406	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14086407	14086515	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14086516	14086603	0.99	-	1	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14086516	14086603	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14086604	14086718	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14086719	14086794	1	-	2	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14086719	14086794	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14086795	14086888	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14086889	14087012	1	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14086889	14087012	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14087013	14087101	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14087102	14087190	1	-	2	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14087102	14087190	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14087191	14087274	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14087275	14087377	1	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14087275	14087377	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14087378	14087470	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14087471	14087561	1	-	1	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14087471	14087561	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14087562	14087637	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14087638	14087745	1	-	1	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14087638	14087745	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14087746	14087831	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14087832	14087915	1	-	1	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14087832	14087915	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14087916	14088009	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14088010	14088182	1	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14088010	14088182	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14088183	14088267	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14088268	14088342	1	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14088268	14088342	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14088343	14088427	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14088428	14088637	1	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14088428	14088637	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14088638	14088805	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14088806	14088975	0.99	-	2	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14088806	14088975	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14088976	14089085	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14089086	14089146	0.91	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14089086	14089146	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14089147	14089235	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14089236	14089301	1	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14089236	14089301	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14089302	14089418	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14089419	14089543	1	-	2	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14089419	14089543	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	intron	14089544	14089685	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	CDS	14089686	14089710	0.97	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	exon	14089686	14089710	.	-	.	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
Ledus.S2	AUGUSTUS	start_codon	14089708	14089710	.	-	0	transcript_id "Ledus.S2G187200.t1"; gene_id "Ledus.S2G187200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3312.t1 is derived from g747.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7435529	7436575	.	+	.	Ledus.S1G073300
Ledus.S1	AUGUSTUS	transcript	7435529	7436575	.	+	.	transcript_id "Ledus.S1G073300.t1"; gene_id "Ledus.S1G073300"
Ledus.S1	AUGUSTUS	start_codon	7435529	7435531	.	+	0	transcript_id "Ledus.S1G073300.t1"; gene_id "Ledus.S1G073300"
Ledus.S1	AUGUSTUS	CDS	7435529	7436575	0.96	+	0	transcript_id "Ledus.S1G073300.t1"; gene_id "Ledus.S1G073300"
Ledus.S1	AUGUSTUS	exon	7435529	7436575	.	+	.	transcript_id "Ledus.S1G073300.t1"; gene_id "Ledus.S1G073300"
Ledus.S1	AUGUSTUS	stop_codon	7436576	7436578	.	+	0	transcript_id "Ledus.S1G073300.t1"; gene_id "Ledus.S1G073300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3005.t1 is derived from g440.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5234480	5236266	.	-	.	Ledus.S1G042600
Ledus.S1	AUGUSTUS	transcript	5234480	5236266	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	stop_codon	5234477	5234479	.	-	0	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	CDS	5234480	5234710	1	-	0	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	exon	5234480	5234710	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	intron	5234711	5234849	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	CDS	5234850	5234927	1	-	0	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	exon	5234850	5234927	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	intron	5234928	5235030	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	CDS	5235031	5235183	1	-	0	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	exon	5235031	5235183	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	intron	5235184	5235294	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	CDS	5235295	5235390	0.98	-	0	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	exon	5235295	5235390	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	intron	5235391	5235477	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	CDS	5235478	5235597	1	-	0	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	exon	5235478	5235597	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	intron	5235598	5235820	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	CDS	5235821	5235954	1	-	2	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	exon	5235821	5235954	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	intron	5235955	5236100	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	CDS	5236101	5236266	0.47	-	0	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	exon	5236101	5236266	.	-	.	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
Ledus.S1	AUGUSTUS	start_codon	5236264	5236266	.	-	0	transcript_id "Ledus.S1G042600.t1"; gene_id "Ledus.S1G042600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1839.t1 is derived from g8702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12908073	12909172	.	+	.	Ledus.S2G172100
Ledus.S2	AUGUSTUS	transcript	12908073	12909172	.	+	.	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	start_codon	12908073	12908075	.	+	0	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	CDS	12908073	12908150	0.85	+	0	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	exon	12908073	12908150	.	+	.	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	intron	12908151	12908233	.	+	.	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	CDS	12908234	12908503	0.98	+	0	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	exon	12908234	12908503	.	+	.	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	intron	12908504	12908569	.	+	.	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	CDS	12908570	12908693	0.84	+	0	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	exon	12908570	12908693	.	+	.	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	intron	12908694	12908879	.	+	.	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	CDS	12908880	12909010	0.73	+	2	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	exon	12908880	12909010	.	+	.	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	intron	12909011	12909100	.	+	.	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	CDS	12909101	12909172	0.91	+	0	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	exon	12909101	12909172	.	+	.	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
Ledus.S2	AUGUSTUS	stop_codon	12909173	12909175	.	+	0	transcript_id "Ledus.S2G172100.t1"; gene_id "Ledus.S2G172100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5720.t1 is derived from g3159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26220687	26221901	.	+	.	Ledus.S1G314100
Ledus.S1	AUGUSTUS	transcript	26220687	26221901	.	+	.	transcript_id "Ledus.S1G314100.t1"; gene_id "Ledus.S1G314100"
Ledus.S1	AUGUSTUS	start_codon	26220687	26220689	.	+	0	transcript_id "Ledus.S1G314100.t1"; gene_id "Ledus.S1G314100"
Ledus.S1	AUGUSTUS	CDS	26220687	26221901	0.82	+	0	transcript_id "Ledus.S1G314100.t1"; gene_id "Ledus.S1G314100"
Ledus.S1	AUGUSTUS	exon	26220687	26221901	.	+	.	transcript_id "Ledus.S1G314100.t1"; gene_id "Ledus.S1G314100"
Ledus.S1	AUGUSTUS	stop_codon	26221902	26221904	.	+	0	transcript_id "Ledus.S1G314100.t1"; gene_id "Ledus.S1G314100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1267.t1 is derived from g8128.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8995690	8997982	.	+	.	Ledus.S2G114900
Ledus.S2	AUGUSTUS	transcript	8995690	8997982	.	+	.	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	start_codon	8995690	8995692	.	+	0	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	CDS	8995690	8995828	0.62	+	0	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	exon	8995690	8995828	.	+	.	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	intron	8995829	8996535	.	+	.	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	CDS	8996536	8996582	1	+	2	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	exon	8996536	8996582	.	+	.	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	intron	8996583	8996665	.	+	.	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	CDS	8996666	8997186	1	+	0	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	exon	8996666	8997186	.	+	.	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	intron	8997187	8997339	.	+	.	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	CDS	8997340	8997472	0.97	+	1	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	exon	8997340	8997472	.	+	.	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	intron	8997473	8997557	.	+	.	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	CDS	8997558	8997701	0.8	+	0	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	exon	8997558	8997701	.	+	.	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	intron	8997702	8997835	.	+	.	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	CDS	8997836	8997982	1	+	0	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	exon	8997836	8997982	.	+	.	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
Ledus.S2	AUGUSTUS	stop_codon	8997983	8997985	.	+	0	transcript_id "Ledus.S2G114900.t1"; gene_id "Ledus.S2G114900"
# This transcript jg8188.t2 is derived from g12859.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8189.t1 is derived from g12860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9755849	9756943	.	-	.	Ledus.S5G096700
Ledus.S5	AUGUSTUS	transcript	9755849	9756943	.	-	.	transcript_id "Ledus.S5G096700.t1"; gene_id "Ledus.S5G096700"
Ledus.S5	AUGUSTUS	stop_codon	9755846	9755848	.	-	0	transcript_id "Ledus.S5G096700.t1"; gene_id "Ledus.S5G096700"
Ledus.S5	AUGUSTUS	CDS	9755849	9756943	0.45	-	0	transcript_id "Ledus.S5G096700.t1"; gene_id "Ledus.S5G096700"
Ledus.S5	AUGUSTUS	exon	9755849	9756943	.	-	.	transcript_id "Ledus.S5G096700.t1"; gene_id "Ledus.S5G096700"
Ledus.S5	AUGUSTUS	start_codon	9756941	9756943	.	-	0	transcript_id "Ledus.S5G096700.t1"; gene_id "Ledus.S5G096700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4796.t1 is derived from g2234.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19804769	19805131	.	+	.	Ledus.S1G221700
Ledus.S1	AUGUSTUS	transcript	19804769	19805131	.	+	.	transcript_id "Ledus.S1G221700.t1"; gene_id "Ledus.S1G221700"
Ledus.S1	AUGUSTUS	start_codon	19804769	19804771	.	+	0	transcript_id "Ledus.S1G221700.t1"; gene_id "Ledus.S1G221700"
Ledus.S1	AUGUSTUS	CDS	19804769	19805131	0.56	+	0	transcript_id "Ledus.S1G221700.t1"; gene_id "Ledus.S1G221700"
Ledus.S1	AUGUSTUS	exon	19804769	19805131	.	+	.	transcript_id "Ledus.S1G221700.t1"; gene_id "Ledus.S1G221700"
Ledus.S1	AUGUSTUS	stop_codon	19805132	19805134	.	+	0	transcript_id "Ledus.S1G221700.t1"; gene_id "Ledus.S1G221700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg713.t1 is derived from g7574.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4419344	4422670	.	+	.	Ledus.S2G059500
Ledus.S2	AUGUSTUS	transcript	4419344	4422670	.	+	.	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	start_codon	4419344	4419346	.	+	0	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	CDS	4419344	4419474	0.64	+	0	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	exon	4419344	4419474	.	+	.	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	intron	4419475	4419644	.	+	.	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	CDS	4419645	4419738	0.92	+	1	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	exon	4419645	4419738	.	+	.	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	intron	4419739	4420087	.	+	.	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	CDS	4420088	4421795	0.97	+	0	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	exon	4420088	4421795	.	+	.	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	intron	4421796	4421903	.	+	.	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	CDS	4421904	4422670	0.94	+	2	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	exon	4421904	4422670	.	+	.	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	stop_codon	4422671	4422673	.	+	0	transcript_id "Ledus.S2G059500.t1"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	transcript	4422125	4422670	.	+	.	transcript_id "Ledus.S2G059500.t2"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	start_codon	4422125	4422127	.	+	0	transcript_id "Ledus.S2G059500.t2"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	CDS	4422125	4422670	0.84	+	0	transcript_id "Ledus.S2G059500.t2"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	exon	4422125	4422670	.	+	.	transcript_id "Ledus.S2G059500.t2"; gene_id "Ledus.S2G059500"
Ledus.S2	AUGUSTUS	stop_codon	4422671	4422673	.	+	0	transcript_id "Ledus.S2G059500.t2"; gene_id "Ledus.S2G059500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5119.t1 is derived from g2558.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21799417	21800124	.	-	.	Ledus.S1G254000
Ledus.S1	AUGUSTUS	transcript	21799417	21800124	.	-	.	transcript_id "Ledus.S1G254000.t1"; gene_id "Ledus.S1G254000"
Ledus.S1	AUGUSTUS	stop_codon	21799414	21799416	.	-	0	transcript_id "Ledus.S1G254000.t1"; gene_id "Ledus.S1G254000"
Ledus.S1	AUGUSTUS	CDS	21799417	21800124	1	-	0	transcript_id "Ledus.S1G254000.t1"; gene_id "Ledus.S1G254000"
Ledus.S1	AUGUSTUS	exon	21799417	21800124	.	-	.	transcript_id "Ledus.S1G254000.t1"; gene_id "Ledus.S1G254000"
Ledus.S1	AUGUSTUS	start_codon	21800122	21800124	.	-	0	transcript_id "Ledus.S1G254000.t1"; gene_id "Ledus.S1G254000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8238.t1 is derived from g12909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10084035	10086524	.	-	.	Ledus.S5G101600
Ledus.S5	AUGUSTUS	transcript	10084035	10086524	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	stop_codon	10084032	10084034	.	-	0	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	CDS	10084035	10084584	0.98	-	1	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	exon	10084035	10084584	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	intron	10084585	10084666	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	CDS	10084667	10084755	1	-	0	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	exon	10084667	10084755	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	intron	10084756	10084873	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	CDS	10084874	10085059	1	-	0	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	exon	10084874	10085059	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	intron	10085060	10085198	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	CDS	10085199	10085273	1	-	0	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	exon	10085199	10085273	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	intron	10085274	10085353	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	CDS	10085354	10085536	1	-	0	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	exon	10085354	10085536	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	intron	10085537	10085727	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	CDS	10085728	10085776	1	-	1	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	exon	10085728	10085776	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	intron	10085777	10085872	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	CDS	10085873	10086014	1	-	2	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	exon	10085873	10086014	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	intron	10086015	10086148	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	CDS	10086149	10086236	1	-	0	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	exon	10086149	10086236	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	intron	10086237	10086425	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	CDS	10086426	10086524	0.99	-	0	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	exon	10086426	10086524	.	-	.	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
Ledus.S5	AUGUSTUS	start_codon	10086522	10086524	.	-	0	transcript_id "Ledus.S5G101600.t1"; gene_id "Ledus.S5G101600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6568.t1 is derived from g4011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32438922	32443664	.	+	.	Ledus.S1G398900
Ledus.S1	AUGUSTUS	transcript	32438922	32443664	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	start_codon	32438922	32438924	.	+	0	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32438922	32438973	0.55	+	0	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32438922	32438973	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32438974	32439125	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32439126	32439158	0.78	+	2	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32439126	32439158	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32439159	32439228	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32439229	32439318	1	+	2	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32439229	32439318	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32439319	32439406	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32439407	32439471	1	+	2	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32439407	32439471	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32439472	32439623	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32439624	32439706	1	+	0	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32439624	32439706	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32439707	32439777	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32439778	32440305	1	+	1	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32439778	32440305	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32440306	32440397	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32440398	32440488	1	+	1	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32440398	32440488	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32440489	32440573	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32440574	32440618	0.82	+	0	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32440574	32440618	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32440619	32440980	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32440981	32441152	0.81	+	0	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32440981	32441152	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32441153	32441571	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32441572	32441636	0.96	+	2	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32441572	32441636	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32441637	32441795	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32441796	32442548	1	+	0	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32441796	32442548	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32442549	32442652	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32442653	32442943	0.99	+	0	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32442653	32442943	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32442944	32443035	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32443036	32443154	1	+	0	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32443036	32443154	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	intron	32443155	32443291	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	CDS	32443292	32443664	1	+	1	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	exon	32443292	32443664	.	+	.	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
Ledus.S1	AUGUSTUS	stop_codon	32443665	32443667	.	+	0	transcript_id "Ledus.S1G398900.t1"; gene_id "Ledus.S1G398900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4227.t1 is derived from g1663.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15651561	15653346	.	+	.	Ledus.S1G164800
Ledus.S1	AUGUSTUS	transcript	15651561	15653346	.	+	.	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	start_codon	15651561	15651563	.	+	0	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	CDS	15651561	15651588	1	+	0	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	exon	15651561	15651588	.	+	.	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	intron	15651589	15651683	.	+	.	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	CDS	15651684	15651860	1	+	2	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	exon	15651684	15651860	.	+	.	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	intron	15651861	15652008	.	+	.	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	CDS	15652009	15652347	1	+	2	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	exon	15652009	15652347	.	+	.	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	intron	15652348	15652437	.	+	.	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	CDS	15652438	15652692	0.97	+	2	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	exon	15652438	15652692	.	+	.	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	intron	15652693	15652800	.	+	.	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	CDS	15652801	15652934	0.97	+	2	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	exon	15652801	15652934	.	+	.	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	intron	15652935	15653019	.	+	.	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	CDS	15653020	15653346	0.79	+	0	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	exon	15653020	15653346	.	+	.	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
Ledus.S1	AUGUSTUS	stop_codon	15653347	15653349	.	+	0	transcript_id "Ledus.S1G164800.t1"; gene_id "Ledus.S1G164800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7707.t1 is derived from g12378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5324052	5325481	.	-	.	Ledus.S5G048500
Ledus.S5	AUGUSTUS	transcript	5324052	5325481	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	stop_codon	5324049	5324051	.	-	0	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	CDS	5324052	5324141	1	-	0	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	exon	5324052	5324141	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	intron	5324142	5324248	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	CDS	5324249	5324333	1	-	1	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	exon	5324249	5324333	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	intron	5324334	5324452	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	CDS	5324453	5324559	1	-	0	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	exon	5324453	5324559	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	intron	5324560	5324744	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	CDS	5324745	5324834	1	-	0	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	exon	5324745	5324834	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	intron	5324835	5324923	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	CDS	5324924	5325067	1	-	0	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	exon	5324924	5325067	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	intron	5325068	5325230	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	CDS	5325231	5325281	1	-	0	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	exon	5325231	5325281	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	intron	5325282	5325370	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	CDS	5325371	5325481	1	-	0	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	exon	5325371	5325481	.	-	.	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
Ledus.S5	AUGUSTUS	start_codon	5325479	5325481	.	-	0	transcript_id "Ledus.S5G048500.t1"; gene_id "Ledus.S5G048500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2118.t1 is derived from g8981.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14805266	14806980	.	-	.	Ledus.S2G200000
Ledus.S2	AUGUSTUS	transcript	14805266	14806980	.	-	.	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	stop_codon	14805263	14805265	.	-	0	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	CDS	14805266	14805451	0.85	-	0	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	exon	14805266	14805451	.	-	.	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	intron	14805452	14805541	.	-	.	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	CDS	14805542	14805634	0.96	-	0	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	exon	14805542	14805634	.	-	.	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	intron	14805635	14805740	.	-	.	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	CDS	14805741	14805884	0.96	-	0	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	exon	14805741	14805884	.	-	.	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	intron	14805885	14805969	.	-	.	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	CDS	14805970	14806104	1	-	0	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	exon	14805970	14806104	.	-	.	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	intron	14806105	14806202	.	-	.	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	CDS	14806203	14806564	0.98	-	2	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	exon	14806203	14806564	.	-	.	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	intron	14806565	14806652	.	-	.	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	CDS	14806653	14806980	0.9	-	0	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	exon	14806653	14806980	.	-	.	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
Ledus.S2	AUGUSTUS	start_codon	14806978	14806980	.	-	0	transcript_id "Ledus.S2G200000.t1"; gene_id "Ledus.S2G200000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8075.t1 is derived from g12746.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9049702	9050465	.	-	.	Ledus.S5G085300
Ledus.S5	AUGUSTUS	transcript	9049702	9050465	.	-	.	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	stop_codon	9049699	9049701	.	-	0	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	CDS	9049702	9049806	1	-	0	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	exon	9049702	9049806	.	-	.	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	intron	9049807	9049886	.	-	.	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	CDS	9049887	9050005	0.8	-	2	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	exon	9049887	9050005	.	-	.	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	intron	9050006	9050262	.	-	.	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	CDS	9050263	9050282	0.61	-	1	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	exon	9050263	9050282	.	-	.	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	intron	9050283	9050427	.	-	.	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	CDS	9050428	9050465	0.82	-	0	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	exon	9050428	9050465	.	-	.	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	start_codon	9050463	9050465	.	-	0	transcript_id "Ledus.S5G085300.t1"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	transcript	9049702	9050465	.	-	.	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	stop_codon	9049699	9049701	.	-	0	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	CDS	9049702	9049806	1	-	0	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	exon	9049702	9049806	.	-	.	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	intron	9049807	9049886	.	-	.	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	CDS	9049887	9050005	0.64	-	2	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	exon	9049887	9050005	.	-	.	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	intron	9050006	9050262	.	-	.	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	CDS	9050263	9050285	0.54	-	1	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	exon	9050263	9050285	.	-	.	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	intron	9050286	9050427	.	-	.	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	CDS	9050428	9050465	0.65	-	0	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	exon	9050428	9050465	.	-	.	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
Ledus.S5	AUGUSTUS	start_codon	9050463	9050465	.	-	0	transcript_id "Ledus.S5G085300.t2"; gene_id "Ledus.S5G085300"
# This transcript jg8243.t2 is derived from g12914.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8244.t1 is derived from g12915.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10139036	10140704	.	+	.	Ledus.S5G102200
Ledus.S5	AUGUSTUS	transcript	10139036	10140704	.	+	.	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	start_codon	10139036	10139038	.	+	0	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	CDS	10139036	10139119	0.85	+	0	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	exon	10139036	10139119	.	+	.	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	intron	10139120	10139433	.	+	.	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	CDS	10139434	10139533	1	+	0	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	exon	10139434	10139533	.	+	.	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	intron	10139534	10139627	.	+	.	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	CDS	10139628	10139713	1	+	2	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	exon	10139628	10139713	.	+	.	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	intron	10139714	10139926	.	+	.	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	CDS	10139927	10140018	1	+	0	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	exon	10139927	10140018	.	+	.	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	intron	10140019	10140300	.	+	.	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	CDS	10140301	10140415	1	+	1	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	exon	10140301	10140415	.	+	.	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	intron	10140416	10140530	.	+	.	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	CDS	10140531	10140704	1	+	0	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	exon	10140531	10140704	.	+	.	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
Ledus.S5	AUGUSTUS	stop_codon	10140705	10140707	.	+	0	transcript_id "Ledus.S5G102200.t1"; gene_id "Ledus.S5G102200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13125.t1 is derived from g6935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6518300	6518653	.	+	.	Ledus.S6G018700
Ledus.S6	AUGUSTUS	transcript	6518300	6518653	.	+	.	transcript_id "Ledus.S6G018700.t1"; gene_id "Ledus.S6G018700"
Ledus.S6	AUGUSTUS	start_codon	6518300	6518302	.	+	0	transcript_id "Ledus.S6G018700.t1"; gene_id "Ledus.S6G018700"
Ledus.S6	AUGUSTUS	CDS	6518300	6518653	0.53	+	0	transcript_id "Ledus.S6G018700.t1"; gene_id "Ledus.S6G018700"
Ledus.S6	AUGUSTUS	exon	6518300	6518653	.	+	.	transcript_id "Ledus.S6G018700.t1"; gene_id "Ledus.S6G018700"
Ledus.S6	AUGUSTUS	stop_codon	6518654	6518656	.	+	0	transcript_id "Ledus.S6G018700.t1"; gene_id "Ledus.S6G018700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5189.t1 is derived from g2628.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22325886	22326613	.	-	.	Ledus.S1G261000
Ledus.S1	AUGUSTUS	transcript	22325886	22326613	.	-	.	transcript_id "Ledus.S1G261000.t1"; gene_id "Ledus.S1G261000"
Ledus.S1	AUGUSTUS	stop_codon	22325883	22325885	.	-	0	transcript_id "Ledus.S1G261000.t1"; gene_id "Ledus.S1G261000"
Ledus.S1	AUGUSTUS	CDS	22325886	22326035	0.4	-	0	transcript_id "Ledus.S1G261000.t1"; gene_id "Ledus.S1G261000"
Ledus.S1	AUGUSTUS	exon	22325886	22326035	.	-	.	transcript_id "Ledus.S1G261000.t1"; gene_id "Ledus.S1G261000"
Ledus.S1	AUGUSTUS	intron	22326036	22326313	.	-	.	transcript_id "Ledus.S1G261000.t1"; gene_id "Ledus.S1G261000"
Ledus.S1	AUGUSTUS	CDS	22326314	22326613	0.63	-	0	transcript_id "Ledus.S1G261000.t1"; gene_id "Ledus.S1G261000"
Ledus.S1	AUGUSTUS	exon	22326314	22326613	.	-	.	transcript_id "Ledus.S1G261000.t1"; gene_id "Ledus.S1G261000"
Ledus.S1	AUGUSTUS	start_codon	22326611	22326613	.	-	0	transcript_id "Ledus.S1G261000.t1"; gene_id "Ledus.S1G261000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8560.t1 is derived from g9590.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	177410	179808	.	+	.	Ledus.S3G003700
Ledus.S3	AUGUSTUS	transcript	177410	179808	.	+	.	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	start_codon	177410	177412	.	+	0	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	CDS	177410	178979	0.99	+	0	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	exon	177410	178979	.	+	.	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	intron	178980	179060	.	+	.	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	CDS	179061	179244	1	+	2	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	exon	179061	179244	.	+	.	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	intron	179245	179327	.	+	.	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	CDS	179328	179499	1	+	1	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	exon	179328	179499	.	+	.	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	intron	179500	179589	.	+	.	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	CDS	179590	179808	1	+	0	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	exon	179590	179808	.	+	.	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
Ledus.S3	AUGUSTUS	stop_codon	179809	179811	.	+	0	transcript_id "Ledus.S3G003700.t1"; gene_id "Ledus.S3G003700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3800.t1 is derived from g1236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12336872	12337303	.	-	.	Ledus.S1G122100
Ledus.S1	AUGUSTUS	transcript	12336872	12337303	.	-	.	transcript_id "Ledus.S1G122100.t1"; gene_id "Ledus.S1G122100"
Ledus.S1	AUGUSTUS	stop_codon	12336869	12336871	.	-	0	transcript_id "Ledus.S1G122100.t1"; gene_id "Ledus.S1G122100"
Ledus.S1	AUGUSTUS	CDS	12336872	12337303	0.94	-	0	transcript_id "Ledus.S1G122100.t1"; gene_id "Ledus.S1G122100"
Ledus.S1	AUGUSTUS	exon	12336872	12337303	.	-	.	transcript_id "Ledus.S1G122100.t1"; gene_id "Ledus.S1G122100"
Ledus.S1	AUGUSTUS	start_codon	12337301	12337303	.	-	0	transcript_id "Ledus.S1G122100.t1"; gene_id "Ledus.S1G122100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7949.t1 is derived from g12620.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8054930	8055424	.	+	.	Ledus.S5G072700
Ledus.S5	AUGUSTUS	transcript	8054930	8055424	.	+	.	transcript_id "Ledus.S5G072700.t1"; gene_id "Ledus.S5G072700"
Ledus.S5	AUGUSTUS	start_codon	8054930	8054932	.	+	0	transcript_id "Ledus.S5G072700.t1"; gene_id "Ledus.S5G072700"
Ledus.S5	AUGUSTUS	CDS	8054930	8055424	0.97	+	0	transcript_id "Ledus.S5G072700.t1"; gene_id "Ledus.S5G072700"
Ledus.S5	AUGUSTUS	exon	8054930	8055424	.	+	.	transcript_id "Ledus.S5G072700.t1"; gene_id "Ledus.S5G072700"
Ledus.S5	AUGUSTUS	stop_codon	8055425	8055427	.	+	0	transcript_id "Ledus.S5G072700.t1"; gene_id "Ledus.S5G072700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg391.t1 is derived from g7252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2204561	2204800	.	+	.	Ledus.S2G027300
Ledus.S2	AUGUSTUS	transcript	2204561	2204800	.	+	.	transcript_id "Ledus.S2G027300.t1"; gene_id "Ledus.S2G027300"
Ledus.S2	AUGUSTUS	start_codon	2204561	2204563	.	+	0	transcript_id "Ledus.S2G027300.t1"; gene_id "Ledus.S2G027300"
Ledus.S2	AUGUSTUS	CDS	2204561	2204800	0.59	+	0	transcript_id "Ledus.S2G027300.t1"; gene_id "Ledus.S2G027300"
Ledus.S2	AUGUSTUS	exon	2204561	2204800	.	+	.	transcript_id "Ledus.S2G027300.t1"; gene_id "Ledus.S2G027300"
Ledus.S2	AUGUSTUS	stop_codon	2204801	2204803	.	+	0	transcript_id "Ledus.S2G027300.t1"; gene_id "Ledus.S2G027300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2269.t1 is derived from g9132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16778967	16779877	.	+	.	Ledus.S2G215100
Ledus.S2	AUGUSTUS	transcript	16778967	16779877	.	+	.	transcript_id "Ledus.S2G215100.t1"; gene_id "Ledus.S2G215100"
Ledus.S2	AUGUSTUS	start_codon	16778967	16778969	.	+	0	transcript_id "Ledus.S2G215100.t1"; gene_id "Ledus.S2G215100"
Ledus.S2	AUGUSTUS	CDS	16778967	16779739	0.29	+	0	transcript_id "Ledus.S2G215100.t1"; gene_id "Ledus.S2G215100"
Ledus.S2	AUGUSTUS	exon	16778967	16779739	.	+	.	transcript_id "Ledus.S2G215100.t1"; gene_id "Ledus.S2G215100"
Ledus.S2	AUGUSTUS	intron	16779740	16779867	.	+	.	transcript_id "Ledus.S2G215100.t1"; gene_id "Ledus.S2G215100"
Ledus.S2	AUGUSTUS	CDS	16779868	16779877	0.66	+	1	transcript_id "Ledus.S2G215100.t1"; gene_id "Ledus.S2G215100"
Ledus.S2	AUGUSTUS	exon	16779868	16779877	.	+	.	transcript_id "Ledus.S2G215100.t1"; gene_id "Ledus.S2G215100"
Ledus.S2	AUGUSTUS	stop_codon	16779878	16779880	.	+	0	transcript_id "Ledus.S2G215100.t1"; gene_id "Ledus.S2G215100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11495.t1 is derived from g5113.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4926449	4927498	.	-	.	Ledus.S4G065100
Ledus.S4	AUGUSTUS	transcript	4926449	4927498	.	-	.	transcript_id "Ledus.S4G065100.t1"; gene_id "Ledus.S4G065100"
Ledus.S4	AUGUSTUS	stop_codon	4926446	4926448	.	-	0	transcript_id "Ledus.S4G065100.t1"; gene_id "Ledus.S4G065100"
Ledus.S4	AUGUSTUS	CDS	4926449	4927498	0.93	-	0	transcript_id "Ledus.S4G065100.t1"; gene_id "Ledus.S4G065100"
Ledus.S4	AUGUSTUS	exon	4926449	4927498	.	-	.	transcript_id "Ledus.S4G065100.t1"; gene_id "Ledus.S4G065100"
Ledus.S4	AUGUSTUS	start_codon	4927496	4927498	.	-	0	transcript_id "Ledus.S4G065100.t1"; gene_id "Ledus.S4G065100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3783.t1 is derived from g1219.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11970915	11971917	.	-	.	Ledus.S1G120400
Ledus.S1	AUGUSTUS	transcript	11970915	11971917	.	-	.	transcript_id "Ledus.S1G120400.t1"; gene_id "Ledus.S1G120400"
Ledus.S1	AUGUSTUS	stop_codon	11970912	11970914	.	-	0	transcript_id "Ledus.S1G120400.t1"; gene_id "Ledus.S1G120400"
Ledus.S1	AUGUSTUS	CDS	11970915	11971486	0.56	-	2	transcript_id "Ledus.S1G120400.t1"; gene_id "Ledus.S1G120400"
Ledus.S1	AUGUSTUS	exon	11970915	11971486	.	-	.	transcript_id "Ledus.S1G120400.t1"; gene_id "Ledus.S1G120400"
Ledus.S1	AUGUSTUS	intron	11971487	11971676	.	-	.	transcript_id "Ledus.S1G120400.t1"; gene_id "Ledus.S1G120400"
Ledus.S1	AUGUSTUS	CDS	11971677	11971917	0.43	-	0	transcript_id "Ledus.S1G120400.t1"; gene_id "Ledus.S1G120400"
Ledus.S1	AUGUSTUS	exon	11971677	11971917	.	-	.	transcript_id "Ledus.S1G120400.t1"; gene_id "Ledus.S1G120400"
Ledus.S1	AUGUSTUS	start_codon	11971915	11971917	.	-	0	transcript_id "Ledus.S1G120400.t1"; gene_id "Ledus.S1G120400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2774.t1 is derived from g208.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3427618	3430311	.	-	.	Ledus.S1G019500
Ledus.S1	AUGUSTUS	transcript	3427618	3430311	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	stop_codon	3427615	3427617	.	-	0	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	CDS	3427618	3427800	0.98	-	0	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	exon	3427618	3427800	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	intron	3427801	3427887	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	CDS	3427888	3427974	1	-	0	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	exon	3427888	3427974	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	intron	3427975	3428274	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	CDS	3428275	3428350	1	-	1	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	exon	3428275	3428350	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	intron	3428351	3428451	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	CDS	3428452	3428702	1	-	0	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	exon	3428452	3428702	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	intron	3428703	3428783	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	CDS	3428784	3428900	1	-	0	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	exon	3428784	3428900	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	intron	3428901	3428991	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	CDS	3428992	3429066	1	-	0	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	exon	3428992	3429066	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	intron	3429067	3429158	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	CDS	3429159	3429380	1	-	0	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	exon	3429159	3429380	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	intron	3429381	3429476	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	CDS	3429477	3429590	1	-	0	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	exon	3429477	3429590	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	intron	3429591	3429690	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	CDS	3429691	3429763	0.64	-	1	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	exon	3429691	3429763	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	intron	3429764	3429858	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	CDS	3429859	3429904	0.64	-	2	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	exon	3429859	3429904	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	intron	3429905	3430058	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	CDS	3430059	3430311	0.68	-	0	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	exon	3430059	3430311	.	-	.	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
Ledus.S1	AUGUSTUS	start_codon	3430309	3430311	.	-	0	transcript_id "Ledus.S1G019500.t1"; gene_id "Ledus.S1G019500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9055.t1 is derived from g10085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4231878	4232413	.	-	.	Ledus.S3G053200
Ledus.S3	AUGUSTUS	transcript	4231878	4232413	.	-	.	transcript_id "Ledus.S3G053200.t1"; gene_id "Ledus.S3G053200"
Ledus.S3	AUGUSTUS	stop_codon	4231875	4231877	.	-	0	transcript_id "Ledus.S3G053200.t1"; gene_id "Ledus.S3G053200"
Ledus.S3	AUGUSTUS	CDS	4231878	4232003	1	-	0	transcript_id "Ledus.S3G053200.t1"; gene_id "Ledus.S3G053200"
Ledus.S3	AUGUSTUS	exon	4231878	4232003	.	-	.	transcript_id "Ledus.S3G053200.t1"; gene_id "Ledus.S3G053200"
Ledus.S3	AUGUSTUS	intron	4232004	4232103	.	-	.	transcript_id "Ledus.S3G053200.t1"; gene_id "Ledus.S3G053200"
Ledus.S3	AUGUSTUS	CDS	4232104	4232176	1	-	1	transcript_id "Ledus.S3G053200.t1"; gene_id "Ledus.S3G053200"
Ledus.S3	AUGUSTUS	exon	4232104	4232176	.	-	.	transcript_id "Ledus.S3G053200.t1"; gene_id "Ledus.S3G053200"
Ledus.S3	AUGUSTUS	intron	4232177	4232396	.	-	.	transcript_id "Ledus.S3G053200.t1"; gene_id "Ledus.S3G053200"
Ledus.S3	AUGUSTUS	CDS	4232397	4232413	0.88	-	0	transcript_id "Ledus.S3G053200.t1"; gene_id "Ledus.S3G053200"
Ledus.S3	AUGUSTUS	exon	4232397	4232413	.	-	.	transcript_id "Ledus.S3G053200.t1"; gene_id "Ledus.S3G053200"
Ledus.S3	AUGUSTUS	start_codon	4232411	4232413	.	-	0	transcript_id "Ledus.S3G053200.t1"; gene_id "Ledus.S3G053200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg642.t1 is derived from g7503.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3844879	3850763	.	+	.	Ledus.S2G052400
Ledus.S2	AUGUSTUS	transcript	3844879	3850763	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	start_codon	3844879	3844881	.	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3844879	3845466	0.98	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3844879	3845466	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3845467	3845595	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3845596	3845661	1	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3845596	3845661	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3845662	3845830	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3845831	3846025	1	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3845831	3846025	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3846026	3846159	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3846160	3846249	1	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3846160	3846249	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3846250	3846386	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3846387	3846428	1	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3846387	3846428	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3846429	3846547	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3846548	3846670	1	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3846548	3846670	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3846671	3846801	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3846802	3846900	0.76	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3846802	3846900	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3846901	3847007	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3847008	3847073	1	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3847008	3847073	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3847074	3847200	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3847201	3847287	1	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3847201	3847287	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3847288	3847380	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3847381	3847420	1	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3847381	3847420	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3847421	3847589	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3847590	3847761	0.92	+	2	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3847590	3847761	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3847762	3847867	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3847868	3847992	0.93	+	1	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3847868	3847992	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3847993	3848077	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3848078	3848208	1	+	2	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3848078	3848208	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3848209	3848349	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3848350	3848454	1	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3848350	3848454	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3848455	3848581	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3848582	3848695	0.92	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3848582	3848695	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3848696	3848812	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3848813	3848980	0.99	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3848813	3848980	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3848981	3849120	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3849121	3849222	1	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3849121	3849222	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3849223	3849358	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3849359	3849868	0.53	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3849359	3849868	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3849869	3849946	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3849947	3850453	1	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3849947	3850453	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	intron	3850454	3850547	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	CDS	3850548	3850763	0.96	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	exon	3850548	3850763	.	+	.	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
Ledus.S2	AUGUSTUS	stop_codon	3850764	3850766	.	+	0	transcript_id "Ledus.S2G052400.t1"; gene_id "Ledus.S2G052400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5679.t1 is derived from g3118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25774213	25777804	.	-	.	Ledus.S1G310000
Ledus.S1	AUGUSTUS	transcript	25774213	25777804	.	-	.	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	stop_codon	25774210	25774212	.	-	0	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	CDS	25774213	25775436	1	-	0	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	exon	25774213	25775436	.	-	.	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	intron	25775437	25775537	.	-	.	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	CDS	25775538	25776253	1	-	2	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	exon	25775538	25776253	.	-	.	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	intron	25776254	25776665	.	-	.	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	CDS	25776666	25776830	0.8	-	2	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	exon	25776666	25776830	.	-	.	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	intron	25776831	25777033	.	-	.	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	CDS	25777034	25777157	0.86	-	0	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	exon	25777034	25777157	.	-	.	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	intron	25777158	25777240	.	-	.	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	CDS	25777241	25777804	0.78	-	0	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	exon	25777241	25777804	.	-	.	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
Ledus.S1	AUGUSTUS	start_codon	25777802	25777804	.	-	0	transcript_id "Ledus.S1G310000.t1"; gene_id "Ledus.S1G310000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8113.t1 is derived from g12784.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9184607	9186010	.	+	.	Ledus.S5G089100
Ledus.S5	AUGUSTUS	transcript	9184607	9186010	.	+	.	transcript_id "Ledus.S5G089100.t1"; gene_id "Ledus.S5G089100"
Ledus.S5	AUGUSTUS	start_codon	9184607	9184609	.	+	0	transcript_id "Ledus.S5G089100.t1"; gene_id "Ledus.S5G089100"
Ledus.S5	AUGUSTUS	CDS	9184607	9186010	0.88	+	0	transcript_id "Ledus.S5G089100.t1"; gene_id "Ledus.S5G089100"
Ledus.S5	AUGUSTUS	exon	9184607	9186010	.	+	.	transcript_id "Ledus.S5G089100.t1"; gene_id "Ledus.S5G089100"
Ledus.S5	AUGUSTUS	stop_codon	9186011	9186013	.	+	0	transcript_id "Ledus.S5G089100.t1"; gene_id "Ledus.S5G089100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1471.t1 is derived from g8332.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10364777	10367704	.	-	.	Ledus.S2G135300
Ledus.S2	AUGUSTUS	transcript	10364777	10367704	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	stop_codon	10364774	10364776	.	-	0	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10364777	10365067	0.91	-	0	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10364777	10365067	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10365068	10365159	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10365160	10365501	0.86	-	0	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10365160	10365501	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10365502	10365636	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10365637	10365749	0.7	-	2	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10365637	10365749	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10365750	10365845	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10365846	10365969	0.39	-	0	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10365846	10365969	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10365970	10366081	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10366082	10366301	0.35	-	1	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10366082	10366301	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10366302	10366405	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10366406	10366541	0.27	-	2	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10366406	10366541	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10366542	10366803	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10366804	10366877	1	-	1	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10366804	10366877	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10366878	10366968	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10366969	10367024	1	-	0	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10366969	10367024	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10367025	10367306	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10367307	10367443	0.99	-	2	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10367307	10367443	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10367444	10367640	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10367641	10367704	0.6	-	0	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10367641	10367704	.	-	.	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	start_codon	10367702	10367704	.	-	0	transcript_id "Ledus.S2G135300.t1"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	transcript	10364777	10367704	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	stop_codon	10364774	10364776	.	-	0	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10364777	10365067	0.94	-	0	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10364777	10365067	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10365068	10365159	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10365160	10365501	0.89	-	0	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10365160	10365501	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10365502	10365636	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10365637	10365749	0.74	-	2	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10365637	10365749	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10365750	10365845	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10365846	10365969	0.48	-	0	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10365846	10365969	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10365970	10366081	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10366082	10366301	0.32	-	1	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10366082	10366301	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10366302	10366405	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10366406	10366541	0.32	-	2	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10366406	10366541	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10366542	10366803	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10366804	10366877	1	-	1	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10366804	10366877	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10366878	10366968	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10366969	10367024	1	-	0	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10366969	10367024	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10367025	10367306	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10367307	10367335	0.68	-	2	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10367307	10367335	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10367336	10367485	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10367486	10367554	0.85	-	2	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10367486	10367554	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	intron	10367555	10367640	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	CDS	10367641	10367704	0.49	-	0	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	exon	10367641	10367704	.	-	.	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
Ledus.S2	AUGUSTUS	start_codon	10367702	10367704	.	-	0	transcript_id "Ledus.S2G135300.t2"; gene_id "Ledus.S2G135300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12494.t1 is derived from g6115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12377337	12380912	.	+	.	Ledus.S4G165000
Ledus.S4	AUGUSTUS	transcript	12377337	12380912	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	start_codon	12377337	12377339	.	+	0	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12377337	12377444	0.67	+	0	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12377337	12377444	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12377445	12377587	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12377588	12377639	1	+	0	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12377588	12377639	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12377640	12377734	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12377735	12377866	1	+	2	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12377735	12377866	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12377867	12377940	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12377941	12378338	1	+	2	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12377941	12378338	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12378339	12378509	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12378510	12378796	1	+	0	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12378510	12378796	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12378797	12378919	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12378920	12379115	0.97	+	1	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12378920	12379115	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12379116	12379334	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12379335	12379541	1	+	0	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12379335	12379541	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12379542	12379696	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12379697	12379867	1	+	0	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12379697	12379867	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12379868	12379998	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12379999	12380319	1	+	0	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12379999	12380319	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12380320	12380404	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12380405	12380535	1	+	0	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12380405	12380535	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12380536	12380797	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12380798	12380912	0.43	+	1	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12380798	12380912	.	+	.	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	stop_codon	12380913	12380915	.	+	0	transcript_id "Ledus.S4G165000.t1"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	transcript	12377337	12380912	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	start_codon	12377337	12377339	.	+	0	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12377337	12377444	0.65	+	0	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12377337	12377444	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12377445	12377587	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12377588	12377639	1	+	0	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12377588	12377639	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12377640	12377734	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12377735	12377866	1	+	2	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12377735	12377866	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12377867	12377940	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12377941	12378338	1	+	2	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12377941	12378338	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12378339	12378509	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12378510	12378796	1	+	0	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12378510	12378796	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12378797	12378919	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12378920	12379115	0.83	+	1	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12378920	12379115	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12379116	12379338	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12379339	12379410	0.53	+	0	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12379339	12379410	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12379411	12379511	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12379512	12379541	0.52	+	0	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12379512	12379541	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12379542	12379696	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12379697	12379867	1	+	0	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12379697	12379867	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12379868	12379998	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12379999	12380319	1	+	0	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12379999	12380319	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12380320	12380404	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12380405	12380535	1	+	0	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12380405	12380535	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	intron	12380536	12380797	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	CDS	12380798	12380912	0.42	+	1	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	exon	12380798	12380912	.	+	.	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
Ledus.S4	AUGUSTUS	stop_codon	12380913	12380915	.	+	0	transcript_id "Ledus.S4G165000.t2"; gene_id "Ledus.S4G165000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8783.t1 is derived from g9813.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1951672	1957592	.	-	.	Ledus.S3G026000
Ledus.S3	AUGUSTUS	transcript	1951672	1957592	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	stop_codon	1951669	1951671	.	-	0	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1951672	1951685	0.99	-	2	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1951672	1951685	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1951686	1951785	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1951786	1951877	0.85	-	1	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1951786	1951877	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1951878	1952017	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1952018	1952089	0.89	-	1	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1952018	1952089	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1952090	1952243	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1952244	1952303	0.84	-	1	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1952244	1952303	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1952304	1952379	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1952380	1952416	0.79	-	2	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1952380	1952416	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1952417	1952520	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1952521	1952651	0.44	-	1	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1952521	1952651	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1952652	1952865	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1952866	1953006	1	-	1	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1952866	1953006	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1953007	1953155	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1953156	1953380	1	-	1	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1953156	1953380	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1953381	1953581	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1953582	1955190	0.8	-	2	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1953582	1955190	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1955191	1955375	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1955376	1955544	0.99	-	0	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1955376	1955544	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1955545	1955671	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1955672	1955912	0.98	-	1	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1955672	1955912	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1955913	1956092	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1956093	1956535	1	-	0	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1956093	1956535	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1956536	1956651	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1956652	1956846	0.96	-	0	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1956652	1956846	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1956847	1956986	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1956987	1957208	0.99	-	0	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1956987	1957208	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	intron	1957209	1957331	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	CDS	1957332	1957592	0.86	-	0	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	exon	1957332	1957592	.	-	.	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
Ledus.S3	AUGUSTUS	start_codon	1957590	1957592	.	-	0	transcript_id "Ledus.S3G026000.t1"; gene_id "Ledus.S3G026000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1669.t1 is derived from g8530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11785280	11786587	.	+	.	Ledus.S2G155100
Ledus.S2	AUGUSTUS	transcript	11785280	11786587	.	+	.	transcript_id "Ledus.S2G155100.t1"; gene_id "Ledus.S2G155100"
Ledus.S2	AUGUSTUS	start_codon	11785280	11785282	.	+	0	transcript_id "Ledus.S2G155100.t1"; gene_id "Ledus.S2G155100"
Ledus.S2	AUGUSTUS	CDS	11785280	11786587	0.84	+	0	transcript_id "Ledus.S2G155100.t1"; gene_id "Ledus.S2G155100"
Ledus.S2	AUGUSTUS	exon	11785280	11786587	.	+	.	transcript_id "Ledus.S2G155100.t1"; gene_id "Ledus.S2G155100"
Ledus.S2	AUGUSTUS	stop_codon	11786588	11786590	.	+	0	transcript_id "Ledus.S2G155100.t1"; gene_id "Ledus.S2G155100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7289.t1 is derived from g11960.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	787767	788366	.	+	.	Ledus.S5G006700
Ledus.S5	AUGUSTUS	transcript	787767	788366	.	+	.	transcript_id "Ledus.S5G006700.t1"; gene_id "Ledus.S5G006700"
Ledus.S5	AUGUSTUS	start_codon	787767	787769	.	+	0	transcript_id "Ledus.S5G006700.t1"; gene_id "Ledus.S5G006700"
Ledus.S5	AUGUSTUS	CDS	787767	788366	0.99	+	0	transcript_id "Ledus.S5G006700.t1"; gene_id "Ledus.S5G006700"
Ledus.S5	AUGUSTUS	exon	787767	788366	.	+	.	transcript_id "Ledus.S5G006700.t1"; gene_id "Ledus.S5G006700"
Ledus.S5	AUGUSTUS	stop_codon	788367	788369	.	+	0	transcript_id "Ledus.S5G006700.t1"; gene_id "Ledus.S5G006700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4460.t1 is derived from g1896.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17187155	17190436	.	+	.	Ledus.S1G188100
Ledus.S1	AUGUSTUS	transcript	17187842	17190436	.	+	.	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	start_codon	17187842	17187844	.	+	0	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17187842	17188419	0.99	+	0	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17187842	17188419	.	+	.	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17188420	17188594	.	+	.	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17188595	17188682	0.96	+	1	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17188595	17188682	.	+	.	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17188683	17190030	.	+	.	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17190031	17190087	1	+	0	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17190031	17190087	.	+	.	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17190088	17190170	.	+	.	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17190171	17190226	0.96	+	0	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17190171	17190226	.	+	.	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17190227	17190327	.	+	.	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17190328	17190436	0.56	+	1	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17190328	17190436	.	+	.	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	stop_codon	17190437	17190439	.	+	0	transcript_id "Ledus.S1G188100.t1"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	transcript	17187842	17190436	.	+	.	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	start_codon	17187842	17187844	.	+	0	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17187842	17188419	0.98	+	0	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17187842	17188419	.	+	.	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17188420	17188585	.	+	.	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17188586	17188682	1	+	1	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17188586	17188682	.	+	.	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17188683	17190030	.	+	.	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17190031	17190087	1	+	0	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17190031	17190087	.	+	.	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17190088	17190170	.	+	.	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17190171	17190226	0.96	+	0	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17190171	17190226	.	+	.	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17190227	17190327	.	+	.	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17190328	17190436	0.48	+	1	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17190328	17190436	.	+	.	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	stop_codon	17190437	17190439	.	+	0	transcript_id "Ledus.S1G188100.t2"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	transcript	17187155	17190436	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	start_codon	17187155	17187157	.	+	0	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17187155	17187245	0.55	+	0	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17187155	17187245	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17187246	17187577	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17187578	17187617	0.8	+	2	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17187578	17187617	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17187618	17187738	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17187739	17188419	1	+	1	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17187739	17188419	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17188420	17188594	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17188595	17188682	0.96	+	1	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17188595	17188682	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17188683	17190030	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17190031	17190087	1	+	0	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17190031	17190087	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17190088	17190170	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17190171	17190226	0.98	+	0	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17190171	17190226	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	intron	17190227	17190327	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	CDS	17190328	17190436	0.57	+	1	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	exon	17190328	17190436	.	+	.	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
Ledus.S1	AUGUSTUS	stop_codon	17190437	17190439	.	+	0	transcript_id "Ledus.S1G188100.t3"; gene_id "Ledus.S1G188100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3943.t1 is derived from g1379.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13669118	13674308	.	+	.	Ledus.S1G136400
Ledus.S1	AUGUSTUS	transcript	13669118	13674308	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	start_codon	13669118	13669120	.	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13669118	13669232	0.32	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13669118	13669232	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13669233	13669473	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13669474	13669607	0.64	+	2	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13669474	13669607	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13669608	13669792	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13669793	13670145	1	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13669793	13670145	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13670146	13670217	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13670218	13670348	0.98	+	1	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13670218	13670348	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13670349	13670457	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13670458	13670591	0.8	+	2	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13670458	13670591	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13670592	13670717	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13670718	13670818	0.98	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13670718	13670818	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13670819	13671003	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13671004	13671136	1	+	1	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13671004	13671136	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13671137	13671257	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13671258	13671374	0.72	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13671258	13671374	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13671375	13671462	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13671463	13671567	1	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13671463	13671567	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13671568	13671645	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13671646	13671708	0.99	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13671646	13671708	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13671709	13671817	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13671818	13671940	0.98	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13671818	13671940	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13671941	13672094	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13672095	13672254	1	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13672095	13672254	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13672255	13672335	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13672336	13672469	1	+	2	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13672336	13672469	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13672470	13672547	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13672548	13672685	1	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13672548	13672685	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13672686	13672760	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13672761	13672903	1	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13672761	13672903	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13672904	13673034	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13673035	13673097	1	+	1	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13673035	13673097	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13673098	13673192	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13673193	13673256	0.98	+	1	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13673193	13673256	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13673257	13673365	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13673366	13673543	0.99	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13673366	13673543	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13673544	13673627	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13673628	13673701	1	+	2	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13673628	13673701	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13673702	13673791	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13673792	13673886	1	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13673792	13673886	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13673887	13673972	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13673973	13674004	0.9	+	1	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13673973	13674004	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	intron	13674005	13674105	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	CDS	13674106	13674308	0.91	+	2	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	exon	13674106	13674308	.	+	.	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
Ledus.S1	AUGUSTUS	stop_codon	13674309	13674311	.	+	0	transcript_id "Ledus.S1G136400.t1"; gene_id "Ledus.S1G136400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12669.t1 is derived from g6291.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13803137	13804174	.	-	.	Ledus.S4G182500
Ledus.S4	AUGUSTUS	transcript	13803137	13804174	.	-	.	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	stop_codon	13803134	13803136	.	-	0	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	CDS	13803137	13803413	1	-	1	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	exon	13803137	13803413	.	-	.	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	intron	13803414	13803487	.	-	.	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	CDS	13803488	13803624	1	-	0	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	exon	13803488	13803624	.	-	.	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	intron	13803625	13803713	.	-	.	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	CDS	13803714	13803836	1	-	0	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	exon	13803714	13803836	.	-	.	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	intron	13803837	13803928	.	-	.	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	CDS	13803929	13803977	1	-	1	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	exon	13803929	13803977	.	-	.	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	intron	13803978	13804061	.	-	.	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	CDS	13804062	13804174	0.97	-	0	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	exon	13804062	13804174	.	-	.	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
Ledus.S4	AUGUSTUS	start_codon	13804172	13804174	.	-	0	transcript_id "Ledus.S4G182500.t1"; gene_id "Ledus.S4G182500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12275.t1 is derived from g5895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10812832	10814238	.	+	.	Ledus.S4G143100
Ledus.S4	AUGUSTUS	transcript	10812832	10814238	.	+	.	transcript_id "Ledus.S4G143100.t1"; gene_id "Ledus.S4G143100"
Ledus.S4	AUGUSTUS	start_codon	10812832	10812834	.	+	0	transcript_id "Ledus.S4G143100.t1"; gene_id "Ledus.S4G143100"
Ledus.S4	AUGUSTUS	CDS	10812832	10813047	0.98	+	0	transcript_id "Ledus.S4G143100.t1"; gene_id "Ledus.S4G143100"
Ledus.S4	AUGUSTUS	exon	10812832	10813047	.	+	.	transcript_id "Ledus.S4G143100.t1"; gene_id "Ledus.S4G143100"
Ledus.S4	AUGUSTUS	intron	10813048	10813170	.	+	.	transcript_id "Ledus.S4G143100.t1"; gene_id "Ledus.S4G143100"
Ledus.S4	AUGUSTUS	CDS	10813171	10814238	1	+	0	transcript_id "Ledus.S4G143100.t1"; gene_id "Ledus.S4G143100"
Ledus.S4	AUGUSTUS	exon	10813171	10814238	.	+	.	transcript_id "Ledus.S4G143100.t1"; gene_id "Ledus.S4G143100"
Ledus.S4	AUGUSTUS	stop_codon	10814239	10814241	.	+	0	transcript_id "Ledus.S4G143100.t1"; gene_id "Ledus.S4G143100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12517.t1 is derived from g6138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12595254	12595873	.	-	.	Ledus.S4G167300
Ledus.S4	AUGUSTUS	transcript	12595254	12595873	.	-	.	transcript_id "Ledus.S4G167300.t1"; gene_id "Ledus.S4G167300"
Ledus.S4	AUGUSTUS	stop_codon	12595251	12595253	.	-	0	transcript_id "Ledus.S4G167300.t1"; gene_id "Ledus.S4G167300"
Ledus.S4	AUGUSTUS	CDS	12595254	12595269	1	-	1	transcript_id "Ledus.S4G167300.t1"; gene_id "Ledus.S4G167300"
Ledus.S4	AUGUSTUS	exon	12595254	12595269	.	-	.	transcript_id "Ledus.S4G167300.t1"; gene_id "Ledus.S4G167300"
Ledus.S4	AUGUSTUS	intron	12595270	12595517	.	-	.	transcript_id "Ledus.S4G167300.t1"; gene_id "Ledus.S4G167300"
Ledus.S4	AUGUSTUS	CDS	12595518	12595634	1	-	1	transcript_id "Ledus.S4G167300.t1"; gene_id "Ledus.S4G167300"
Ledus.S4	AUGUSTUS	exon	12595518	12595634	.	-	.	transcript_id "Ledus.S4G167300.t1"; gene_id "Ledus.S4G167300"
Ledus.S4	AUGUSTUS	intron	12595635	12595730	.	-	.	transcript_id "Ledus.S4G167300.t1"; gene_id "Ledus.S4G167300"
Ledus.S4	AUGUSTUS	CDS	12595731	12595873	0.28	-	0	transcript_id "Ledus.S4G167300.t1"; gene_id "Ledus.S4G167300"
Ledus.S4	AUGUSTUS	exon	12595731	12595873	.	-	.	transcript_id "Ledus.S4G167300.t1"; gene_id "Ledus.S4G167300"
Ledus.S4	AUGUSTUS	start_codon	12595871	12595873	.	-	0	transcript_id "Ledus.S4G167300.t1"; gene_id "Ledus.S4G167300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11870.t1 is derived from g5489.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7447212	7448928	.	+	.	Ledus.S4G102600
Ledus.S4	AUGUSTUS	transcript	7447212	7448928	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	start_codon	7447212	7447214	.	+	0	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	CDS	7447212	7447277	1	+	0	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	exon	7447212	7447277	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	intron	7447278	7447550	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	CDS	7447551	7447679	1	+	0	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	exon	7447551	7447679	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	intron	7447680	7447814	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	CDS	7447815	7447868	1	+	0	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	exon	7447815	7447868	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	intron	7447869	7447992	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	CDS	7447993	7448095	1	+	0	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	exon	7447993	7448095	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	intron	7448096	7448197	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	CDS	7448198	7448256	1	+	2	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	exon	7448198	7448256	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	intron	7448257	7448355	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	CDS	7448356	7448430	1	+	0	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	exon	7448356	7448430	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	intron	7448431	7448530	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	CDS	7448531	7448588	1	+	0	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	exon	7448531	7448588	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	intron	7448589	7448681	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	CDS	7448682	7448758	1	+	2	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	exon	7448682	7448758	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	intron	7448759	7448844	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	CDS	7448845	7448928	1	+	0	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	exon	7448845	7448928	.	+	.	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
Ledus.S4	AUGUSTUS	stop_codon	7448929	7448931	.	+	0	transcript_id "Ledus.S4G102600.t1"; gene_id "Ledus.S4G102600"
# This transcript jg9801.t2 is derived from g10831.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9802.t1 is derived from g10832.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9944589	9955084	.	+	.	Ledus.S3G127900
Ledus.S3	AUGUSTUS	transcript	9944589	9955084	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	start_codon	9944589	9944591	.	+	0	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	CDS	9944589	9944672	0.98	+	0	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	exon	9944589	9944672	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	intron	9944673	9944749	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	CDS	9944750	9945157	0.9	+	0	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	exon	9944750	9945157	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	intron	9945158	9945240	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	CDS	9945241	9945278	1	+	0	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	exon	9945241	9945278	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	intron	9945279	9945367	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	CDS	9945368	9945495	0.22	+	1	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	exon	9945368	9945495	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	intron	9945496	9945673	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	CDS	9945674	9945721	0.29	+	2	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	exon	9945674	9945721	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	intron	9945722	9945943	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	CDS	9945944	9954213	0.61	+	2	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	exon	9945944	9954213	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	intron	9954214	9954355	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	CDS	9954356	9954433	0.84	+	0	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	exon	9954356	9954433	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	intron	9954434	9954768	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	CDS	9954769	9954816	0.82	+	0	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	exon	9954769	9954816	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	intron	9954817	9954898	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	CDS	9954899	9954963	0.89	+	0	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	exon	9954899	9954963	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	intron	9954964	9955038	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	CDS	9955039	9955084	0.89	+	1	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	exon	9955039	9955084	.	+	.	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
Ledus.S3	AUGUSTUS	stop_codon	9955085	9955087	.	+	0	transcript_id "Ledus.S3G127900.t1"; gene_id "Ledus.S3G127900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7081.t1 is derived from g6612.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1298948	1301002	.	+	.	Ledus.C7G014200
Ledus.C7	AUGUSTUS	transcript	1298948	1301002	.	+	.	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	start_codon	1298948	1298950	.	+	0	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	CDS	1298948	1299233	0.64	+	0	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	exon	1298948	1299233	.	+	.	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	intron	1299234	1299306	.	+	.	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	CDS	1299307	1299416	0.71	+	2	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	exon	1299307	1299416	.	+	.	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	intron	1299417	1299511	.	+	.	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	CDS	1299512	1299672	0.94	+	0	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	exon	1299512	1299672	.	+	.	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	intron	1299673	1300035	.	+	.	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	CDS	1300036	1300085	0.93	+	1	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	exon	1300036	1300085	.	+	.	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	intron	1300086	1300324	.	+	.	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	CDS	1300325	1300626	0.99	+	2	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	exon	1300325	1300626	.	+	.	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	intron	1300627	1300792	.	+	.	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	CDS	1300793	1301002	0.97	+	0	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	exon	1300793	1301002	.	+	.	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
Ledus.C7	AUGUSTUS	stop_codon	1301003	1301005	.	+	0	transcript_id "Ledus.C7G014200.t1"; gene_id "Ledus.C7G014200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3209.t1 is derived from g644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6835188	6835451	.	+	.	Ledus.S1G063000
Ledus.S1	AUGUSTUS	transcript	6835188	6835451	.	+	.	transcript_id "Ledus.S1G063000.t1"; gene_id "Ledus.S1G063000"
Ledus.S1	AUGUSTUS	start_codon	6835188	6835190	.	+	0	transcript_id "Ledus.S1G063000.t1"; gene_id "Ledus.S1G063000"
Ledus.S1	AUGUSTUS	CDS	6835188	6835451	0.82	+	0	transcript_id "Ledus.S1G063000.t1"; gene_id "Ledus.S1G063000"
Ledus.S1	AUGUSTUS	exon	6835188	6835451	.	+	.	transcript_id "Ledus.S1G063000.t1"; gene_id "Ledus.S1G063000"
Ledus.S1	AUGUSTUS	stop_codon	6835452	6835454	.	+	0	transcript_id "Ledus.S1G063000.t1"; gene_id "Ledus.S1G063000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1861.t1 is derived from g8724.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12995491	12997001	.	+	.	Ledus.S2G174300
Ledus.S2	AUGUSTUS	transcript	12995491	12997001	.	+	.	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	start_codon	12995491	12995493	.	+	0	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	CDS	12995491	12995653	0.31	+	0	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	exon	12995491	12995653	.	+	.	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	intron	12995654	12995775	.	+	.	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	CDS	12995776	12995783	0.35	+	2	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	exon	12995776	12995783	.	+	.	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	intron	12995784	12996144	.	+	.	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	CDS	12996145	12996219	0.45	+	0	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	exon	12996145	12996219	.	+	.	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	intron	12996220	12996508	.	+	.	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	CDS	12996509	12996742	0.35	+	0	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	exon	12996509	12996742	.	+	.	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	intron	12996743	12996827	.	+	.	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	CDS	12996828	12997001	0.72	+	0	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	exon	12996828	12997001	.	+	.	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
Ledus.S2	AUGUSTUS	stop_codon	12997002	12997004	.	+	0	transcript_id "Ledus.S2G174300.t1"; gene_id "Ledus.S2G174300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5962.t1 is derived from g3405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28057979	28058694	.	-	.	Ledus.S1G338300
Ledus.S1	AUGUSTUS	transcript	28057979	28058694	.	-	.	transcript_id "Ledus.S1G338300.t1"; gene_id "Ledus.S1G338300"
Ledus.S1	AUGUSTUS	stop_codon	28057976	28057978	.	-	0	transcript_id "Ledus.S1G338300.t1"; gene_id "Ledus.S1G338300"
Ledus.S1	AUGUSTUS	CDS	28057979	28058424	0.89	-	2	transcript_id "Ledus.S1G338300.t1"; gene_id "Ledus.S1G338300"
Ledus.S1	AUGUSTUS	exon	28057979	28058424	.	-	.	transcript_id "Ledus.S1G338300.t1"; gene_id "Ledus.S1G338300"
Ledus.S1	AUGUSTUS	intron	28058425	28058672	.	-	.	transcript_id "Ledus.S1G338300.t1"; gene_id "Ledus.S1G338300"
Ledus.S1	AUGUSTUS	CDS	28058673	28058694	1	-	0	transcript_id "Ledus.S1G338300.t1"; gene_id "Ledus.S1G338300"
Ledus.S1	AUGUSTUS	exon	28058673	28058694	.	-	.	transcript_id "Ledus.S1G338300.t1"; gene_id "Ledus.S1G338300"
Ledus.S1	AUGUSTUS	start_codon	28058692	28058694	.	-	0	transcript_id "Ledus.S1G338300.t1"; gene_id "Ledus.S1G338300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10527.t1 is derived from g11557.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15943727	15945124	.	-	.	Ledus.S3G200400
Ledus.S3	AUGUSTUS	transcript	15943727	15945124	.	-	.	transcript_id "Ledus.S3G200400.t1"; gene_id "Ledus.S3G200400"
Ledus.S3	AUGUSTUS	stop_codon	15943724	15943726	.	-	0	transcript_id "Ledus.S3G200400.t1"; gene_id "Ledus.S3G200400"
Ledus.S3	AUGUSTUS	CDS	15943727	15945124	0.99	-	0	transcript_id "Ledus.S3G200400.t1"; gene_id "Ledus.S3G200400"
Ledus.S3	AUGUSTUS	exon	15943727	15945124	.	-	.	transcript_id "Ledus.S3G200400.t1"; gene_id "Ledus.S3G200400"
Ledus.S3	AUGUSTUS	start_codon	15945122	15945124	.	-	0	transcript_id "Ledus.S3G200400.t1"; gene_id "Ledus.S3G200400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1024.t1 is derived from g7885.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6815999	6816931	.	-	.	Ledus.S2G090600
Ledus.S2	AUGUSTUS	transcript	6815999	6816931	.	-	.	transcript_id "Ledus.S2G090600.t1"; gene_id "Ledus.S2G090600"
Ledus.S2	AUGUSTUS	stop_codon	6815996	6815998	.	-	0	transcript_id "Ledus.S2G090600.t1"; gene_id "Ledus.S2G090600"
Ledus.S2	AUGUSTUS	CDS	6815999	6816931	0.76	-	0	transcript_id "Ledus.S2G090600.t1"; gene_id "Ledus.S2G090600"
Ledus.S2	AUGUSTUS	exon	6815999	6816931	.	-	.	transcript_id "Ledus.S2G090600.t1"; gene_id "Ledus.S2G090600"
Ledus.S2	AUGUSTUS	start_codon	6816929	6816931	.	-	0	transcript_id "Ledus.S2G090600.t1"; gene_id "Ledus.S2G090600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11419.t1 is derived from g5037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4148493	4158970	.	-	.	Ledus.S4G057500
Ledus.S4	AUGUSTUS	transcript	4148493	4158970	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	stop_codon	4148490	4148492	.	-	0	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4148493	4148550	1	-	1	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4148493	4148550	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4148551	4148631	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4148632	4148720	0.59	-	0	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4148632	4148720	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4148721	4148846	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4148847	4148856	0.35	-	1	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4148847	4148856	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4148857	4148946	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4148947	4149056	0.99	-	0	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4148947	4149056	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4149057	4149151	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4149152	4149321	0.99	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4149152	4149321	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4149322	4149407	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4149408	4149582	1	-	0	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4149408	4149582	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4149583	4149668	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4149669	4149922	0.99	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4149669	4149922	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4149923	4150018	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4150019	4150239	1	-	1	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4150019	4150239	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4150240	4150326	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4150327	4150500	1	-	1	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4150327	4150500	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4150501	4150587	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4150588	4150808	1	-	0	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4150588	4150808	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4150809	4150888	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4150889	4151013	0.99	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4150889	4151013	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4151014	4151124	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4151125	4151430	0.95	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4151125	4151430	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4151431	4151524	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4151525	4151905	0.99	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4151525	4151905	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4151906	4151975	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4151976	4152311	0.99	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4151976	4152311	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4152312	4152396	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4152397	4152744	0.92	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4152397	4152744	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4152745	4152829	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4152830	4153183	0.84	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4152830	4153183	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4153184	4153282	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4153283	4153606	0.86	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4153283	4153606	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4153607	4153689	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4153690	4154034	1	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4153690	4154034	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4154035	4154129	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4154130	4154492	0.83	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4154130	4154492	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4154493	4154583	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4154584	4154985	0.99	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4154584	4154985	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4154986	4155084	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4155085	4155471	0.98	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4155085	4155471	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4155472	4155561	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4155562	4155909	0.99	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4155562	4155909	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4155910	4156011	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4156012	4156281	0.52	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4156012	4156281	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4156282	4156433	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4156434	4156817	0.48	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4156434	4156817	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4156818	4156979	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4156980	4157333	0.91	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4156980	4157333	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4157334	4157593	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4157594	4157932	0.95	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4157594	4157932	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4157933	4158007	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4158008	4158391	0.29	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4158008	4158391	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4158392	4158692	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4158693	4158773	0.86	-	2	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4158693	4158773	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	intron	4158774	4158840	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	CDS	4158841	4158970	0.91	-	0	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	exon	4158841	4158970	.	-	.	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
Ledus.S4	AUGUSTUS	start_codon	4158968	4158970	.	-	0	transcript_id "Ledus.S4G057500.t1"; gene_id "Ledus.S4G057500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg393.t1 is derived from g7254.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2210366	2212614	.	+	.	Ledus.S2G027500
Ledus.S2	AUGUSTUS	transcript	2210366	2212614	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	start_codon	2210366	2210368	.	+	0	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	CDS	2210366	2210649	0.67	+	0	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	exon	2210366	2210649	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	intron	2210650	2210744	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	CDS	2210745	2210977	1	+	1	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	exon	2210745	2210977	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	intron	2210978	2211045	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	CDS	2211046	2211170	0.76	+	2	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	exon	2211046	2211170	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	intron	2211171	2211282	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	CDS	2211283	2211347	0.86	+	0	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	exon	2211283	2211347	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	intron	2211348	2211435	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	CDS	2211436	2211507	0.73	+	1	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	exon	2211436	2211507	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	intron	2211508	2211615	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	CDS	2211616	2211678	0.99	+	1	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	exon	2211616	2211678	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	intron	2211679	2211786	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	CDS	2211787	2211855	0.97	+	1	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	exon	2211787	2211855	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	intron	2211856	2211956	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	CDS	2211957	2212165	1	+	1	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	exon	2211957	2212165	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	intron	2212166	2212259	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	CDS	2212260	2212480	0.66	+	2	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	exon	2212260	2212480	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	intron	2212481	2212605	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	CDS	2212606	2212614	0.62	+	0	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	exon	2212606	2212614	.	+	.	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
Ledus.S2	AUGUSTUS	stop_codon	2212615	2212617	.	+	0	transcript_id "Ledus.S2G027500.t1"; gene_id "Ledus.S2G027500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12053.t1 is derived from g5672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9208792	9209856	.	+	.	Ledus.S4G120900
Ledus.S4	AUGUSTUS	transcript	9208792	9209856	.	+	.	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	start_codon	9208792	9208794	.	+	0	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	CDS	9208792	9209004	0.65	+	0	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	exon	9208792	9209004	.	+	.	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	intron	9209005	9209096	.	+	.	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	CDS	9209097	9209126	1	+	0	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	exon	9209097	9209126	.	+	.	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	intron	9209127	9209250	.	+	.	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	CDS	9209251	9209409	1	+	0	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	exon	9209251	9209409	.	+	.	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	intron	9209410	9209578	.	+	.	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	CDS	9209579	9209673	1	+	0	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	exon	9209579	9209673	.	+	.	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	intron	9209674	9209744	.	+	.	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	CDS	9209745	9209856	0.49	+	1	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	exon	9209745	9209856	.	+	.	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
Ledus.S4	AUGUSTUS	stop_codon	9209857	9209859	.	+	0	transcript_id "Ledus.S4G120900.t1"; gene_id "Ledus.S4G120900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3832.t1 is derived from g1268.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12888247	12888537	.	-	.	Ledus.S1G125300
Ledus.S1	AUGUSTUS	transcript	12888247	12888537	.	-	.	transcript_id "Ledus.S1G125300.t1"; gene_id "Ledus.S1G125300"
Ledus.S1	AUGUSTUS	stop_codon	12888244	12888246	.	-	0	transcript_id "Ledus.S1G125300.t1"; gene_id "Ledus.S1G125300"
Ledus.S1	AUGUSTUS	CDS	12888247	12888537	0.72	-	0	transcript_id "Ledus.S1G125300.t1"; gene_id "Ledus.S1G125300"
Ledus.S1	AUGUSTUS	exon	12888247	12888537	.	-	.	transcript_id "Ledus.S1G125300.t1"; gene_id "Ledus.S1G125300"
Ledus.S1	AUGUSTUS	start_codon	12888535	12888537	.	-	0	transcript_id "Ledus.S1G125300.t1"; gene_id "Ledus.S1G125300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4345.t1 is derived from g1781.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16510840	16511488	.	-	.	Ledus.S1G176600
Ledus.S1	AUGUSTUS	transcript	16510840	16511488	.	-	.	transcript_id "Ledus.S1G176600.t1"; gene_id "Ledus.S1G176600"
Ledus.S1	AUGUSTUS	stop_codon	16510837	16510839	.	-	0	transcript_id "Ledus.S1G176600.t1"; gene_id "Ledus.S1G176600"
Ledus.S1	AUGUSTUS	CDS	16510840	16511304	0.77	-	0	transcript_id "Ledus.S1G176600.t1"; gene_id "Ledus.S1G176600"
Ledus.S1	AUGUSTUS	exon	16510840	16511304	.	-	.	transcript_id "Ledus.S1G176600.t1"; gene_id "Ledus.S1G176600"
Ledus.S1	AUGUSTUS	intron	16511305	16511407	.	-	.	transcript_id "Ledus.S1G176600.t1"; gene_id "Ledus.S1G176600"
Ledus.S1	AUGUSTUS	CDS	16511408	16511488	0.79	-	0	transcript_id "Ledus.S1G176600.t1"; gene_id "Ledus.S1G176600"
Ledus.S1	AUGUSTUS	exon	16511408	16511488	.	-	.	transcript_id "Ledus.S1G176600.t1"; gene_id "Ledus.S1G176600"
Ledus.S1	AUGUSTUS	start_codon	16511486	16511488	.	-	0	transcript_id "Ledus.S1G176600.t1"; gene_id "Ledus.S1G176600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4715.t1 is derived from g2153.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19219748	19222685	.	+	.	Ledus.S1G213600
Ledus.S1	AUGUSTUS	transcript	19219748	19222685	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	start_codon	19219748	19219750	.	+	0	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19219748	19219907	1	+	0	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19219748	19219907	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19219908	19220024	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19220025	19220206	0.7	+	2	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19220025	19220206	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19220207	19220466	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19220467	19220503	0.35	+	0	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19220467	19220503	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19220504	19220639	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19220640	19220685	0.44	+	2	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19220640	19220685	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19220686	19220777	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19220778	19220867	1	+	1	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19220778	19220867	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19220868	19220944	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19220945	19221037	1	+	1	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19220945	19221037	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19221038	19221133	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19221134	19221206	1	+	1	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19221134	19221206	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19221207	19221330	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19221331	19221395	1	+	0	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19221331	19221395	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19221396	19221500	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19221501	19221594	1	+	1	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19221501	19221594	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19221595	19221693	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19221694	19221786	1	+	0	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19221694	19221786	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19221787	19221877	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19221878	19221913	1	+	0	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19221878	19221913	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19221914	19222074	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19222075	19222115	1	+	0	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19222075	19222115	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19222116	19222218	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19222219	19222307	1	+	1	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19222219	19222307	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19222308	19222406	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19222407	19222495	1	+	2	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19222407	19222495	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	intron	19222496	19222571	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	CDS	19222572	19222685	1	+	0	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	exon	19222572	19222685	.	+	.	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
Ledus.S1	AUGUSTUS	stop_codon	19222686	19222688	.	+	0	transcript_id "Ledus.S1G213600.t1"; gene_id "Ledus.S1G213600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4111.t1 is derived from g1547.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14760460	14761834	.	+	.	Ledus.S1G153200
Ledus.S1	AUGUSTUS	transcript	14760460	14761834	.	+	.	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	start_codon	14760460	14760462	.	+	0	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	CDS	14760460	14760779	0.71	+	0	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	exon	14760460	14760779	.	+	.	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	intron	14760780	14760855	.	+	.	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	CDS	14760856	14760961	1	+	1	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	exon	14760856	14760961	.	+	.	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	intron	14760962	14761095	.	+	.	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	CDS	14761096	14761242	1	+	0	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	exon	14761096	14761242	.	+	.	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	intron	14761243	14761360	.	+	.	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	CDS	14761361	14761834	0.97	+	0	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	exon	14761361	14761834	.	+	.	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
Ledus.S1	AUGUSTUS	stop_codon	14761835	14761837	.	+	0	transcript_id "Ledus.S1G153200.t1"; gene_id "Ledus.S1G153200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11400.t1 is derived from g5018.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4007599	4009413	.	+	.	Ledus.S4G055600
Ledus.S4	AUGUSTUS	transcript	4007599	4009413	.	+	.	transcript_id "Ledus.S4G055600.t1"; gene_id "Ledus.S4G055600"
Ledus.S4	AUGUSTUS	start_codon	4007599	4007601	.	+	0	transcript_id "Ledus.S4G055600.t1"; gene_id "Ledus.S4G055600"
Ledus.S4	AUGUSTUS	CDS	4007599	4009413	1	+	0	transcript_id "Ledus.S4G055600.t1"; gene_id "Ledus.S4G055600"
Ledus.S4	AUGUSTUS	exon	4007599	4009413	.	+	.	transcript_id "Ledus.S4G055600.t1"; gene_id "Ledus.S4G055600"
Ledus.S4	AUGUSTUS	stop_codon	4009414	4009416	.	+	0	transcript_id "Ledus.S4G055600.t1"; gene_id "Ledus.S4G055600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg980.t1 is derived from g7841.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6449116	6449418	.	+	.	Ledus.S2G086200
Ledus.S2	AUGUSTUS	transcript	6449116	6449418	.	+	.	transcript_id "Ledus.S2G086200.t1"; gene_id "Ledus.S2G086200"
Ledus.S2	AUGUSTUS	start_codon	6449116	6449118	.	+	0	transcript_id "Ledus.S2G086200.t1"; gene_id "Ledus.S2G086200"
Ledus.S2	AUGUSTUS	CDS	6449116	6449418	0.94	+	0	transcript_id "Ledus.S2G086200.t1"; gene_id "Ledus.S2G086200"
Ledus.S2	AUGUSTUS	exon	6449116	6449418	.	+	.	transcript_id "Ledus.S2G086200.t1"; gene_id "Ledus.S2G086200"
Ledus.S2	AUGUSTUS	stop_codon	6449419	6449421	.	+	0	transcript_id "Ledus.S2G086200.t1"; gene_id "Ledus.S2G086200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12965.t1 is derived from g6775.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1272611	1273150	.	-	.	Ledus.S6G002700
Ledus.S6	AUGUSTUS	transcript	1272611	1273150	.	-	.	transcript_id "Ledus.S6G002700.t1"; gene_id "Ledus.S6G002700"
Ledus.S6	AUGUSTUS	stop_codon	1272608	1272610	.	-	0	transcript_id "Ledus.S6G002700.t1"; gene_id "Ledus.S6G002700"
Ledus.S6	AUGUSTUS	CDS	1272611	1272771	1	-	2	transcript_id "Ledus.S6G002700.t1"; gene_id "Ledus.S6G002700"
Ledus.S6	AUGUSTUS	exon	1272611	1272771	.	-	.	transcript_id "Ledus.S6G002700.t1"; gene_id "Ledus.S6G002700"
Ledus.S6	AUGUSTUS	intron	1272772	1273008	.	-	.	transcript_id "Ledus.S6G002700.t1"; gene_id "Ledus.S6G002700"
Ledus.S6	AUGUSTUS	CDS	1273009	1273150	0.52	-	0	transcript_id "Ledus.S6G002700.t1"; gene_id "Ledus.S6G002700"
Ledus.S6	AUGUSTUS	exon	1273009	1273150	.	-	.	transcript_id "Ledus.S6G002700.t1"; gene_id "Ledus.S6G002700"
Ledus.S6	AUGUSTUS	start_codon	1273148	1273150	.	-	0	transcript_id "Ledus.S6G002700.t1"; gene_id "Ledus.S6G002700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1850.t1 is derived from g8713.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12942999	12946356	.	-	.	Ledus.S2G173200
Ledus.S2	AUGUSTUS	transcript	12942999	12946356	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	stop_codon	12942996	12942998	.	-	0	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12942999	12943263	0.99	-	1	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12942999	12943263	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12943264	12943343	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12943344	12943473	1	-	2	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12943344	12943473	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12943474	12943563	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12943564	12943667	0.98	-	1	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12943564	12943667	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12943668	12943773	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12943774	12943859	0.95	-	0	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12943774	12943859	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12943860	12943946	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12943947	12944013	1	-	1	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12943947	12944013	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12944014	12944116	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12944117	12944388	0.98	-	0	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12944117	12944388	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12944389	12944524	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12944525	12944608	1	-	0	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12944525	12944608	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12944609	12944728	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12944729	12944779	0.99	-	0	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12944729	12944779	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12944780	12944883	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12944884	12945048	0.93	-	0	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12944884	12945048	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12945049	12945170	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12945171	12945255	0.77	-	1	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12945171	12945255	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12945256	12945360	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12945361	12945428	0.77	-	0	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12945361	12945428	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12945429	12945527	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12945528	12945572	0.95	-	0	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12945528	12945572	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12945573	12945681	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12945682	12945891	0.94	-	0	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12945682	12945891	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12945892	12946007	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12946008	12946024	0.41	-	2	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12946008	12946024	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12946025	12946141	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12946142	12946193	0.41	-	0	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12946142	12946193	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12946194	12946317	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12946318	12946356	0.74	-	0	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12946318	12946356	.	-	.	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	start_codon	12946354	12946356	.	-	0	transcript_id "Ledus.S2G173200.t1"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	transcript	12942999	12946356	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	stop_codon	12942996	12942998	.	-	0	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12942999	12943263	0.99	-	1	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12942999	12943263	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12943264	12943343	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12943344	12943473	1	-	2	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12943344	12943473	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12943474	12943563	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12943564	12943667	1	-	1	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12943564	12943667	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12943668	12943773	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12943774	12943859	0.99	-	0	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12943774	12943859	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12943860	12943946	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12943947	12944013	1	-	1	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12943947	12944013	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12944014	12944116	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12944117	12944388	0.99	-	0	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12944117	12944388	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12944389	12944524	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12944525	12944608	1	-	0	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12944525	12944608	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12944609	12944728	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12944729	12944779	0.98	-	0	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12944729	12944779	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12944780	12944883	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12944884	12945048	0.92	-	0	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12944884	12945048	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12945049	12945170	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12945171	12945248	0.58	-	0	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12945171	12945248	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12945249	12945397	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12945398	12945432	0.9	-	2	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12945398	12945432	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12945433	12945527	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12945528	12945891	1	-	0	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12945528	12945891	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12945892	12946007	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12946008	12946024	0.38	-	2	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12946008	12946024	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12946025	12946141	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12946142	12946193	0.38	-	0	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12946142	12946193	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	intron	12946194	12946317	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	CDS	12946318	12946356	0.69	-	0	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	exon	12946318	12946356	.	-	.	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
Ledus.S2	AUGUSTUS	start_codon	12946354	12946356	.	-	0	transcript_id "Ledus.S2G173200.t2"; gene_id "Ledus.S2G173200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3269.t1 is derived from g704.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7195368	7195977	.	+	.	Ledus.S1G069000
Ledus.S1	AUGUSTUS	transcript	7195368	7195977	.	+	.	transcript_id "Ledus.S1G069000.t1"; gene_id "Ledus.S1G069000"
Ledus.S1	AUGUSTUS	start_codon	7195368	7195370	.	+	0	transcript_id "Ledus.S1G069000.t1"; gene_id "Ledus.S1G069000"
Ledus.S1	AUGUSTUS	CDS	7195368	7195469	0.2	+	0	transcript_id "Ledus.S1G069000.t1"; gene_id "Ledus.S1G069000"
Ledus.S1	AUGUSTUS	exon	7195368	7195469	.	+	.	transcript_id "Ledus.S1G069000.t1"; gene_id "Ledus.S1G069000"
Ledus.S1	AUGUSTUS	intron	7195470	7195605	.	+	.	transcript_id "Ledus.S1G069000.t1"; gene_id "Ledus.S1G069000"
Ledus.S1	AUGUSTUS	CDS	7195606	7195760	0.14	+	0	transcript_id "Ledus.S1G069000.t1"; gene_id "Ledus.S1G069000"
Ledus.S1	AUGUSTUS	exon	7195606	7195760	.	+	.	transcript_id "Ledus.S1G069000.t1"; gene_id "Ledus.S1G069000"
Ledus.S1	AUGUSTUS	intron	7195761	7195838	.	+	.	transcript_id "Ledus.S1G069000.t1"; gene_id "Ledus.S1G069000"
Ledus.S1	AUGUSTUS	CDS	7195839	7195977	0.14	+	1	transcript_id "Ledus.S1G069000.t1"; gene_id "Ledus.S1G069000"
Ledus.S1	AUGUSTUS	exon	7195839	7195977	.	+	.	transcript_id "Ledus.S1G069000.t1"; gene_id "Ledus.S1G069000"
Ledus.S1	AUGUSTUS	stop_codon	7195978	7195980	.	+	0	transcript_id "Ledus.S1G069000.t1"; gene_id "Ledus.S1G069000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7784.t1 is derived from g12455.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6548874	6549810	.	-	.	Ledus.S5G056200
Ledus.S5	AUGUSTUS	transcript	6548874	6549810	.	-	.	transcript_id "Ledus.S5G056200.t1"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	stop_codon	6548871	6548873	.	-	0	transcript_id "Ledus.S5G056200.t1"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	CDS	6548874	6548898	0.88	-	1	transcript_id "Ledus.S5G056200.t1"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	exon	6548874	6548898	.	-	.	transcript_id "Ledus.S5G056200.t1"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	intron	6548899	6549163	.	-	.	transcript_id "Ledus.S5G056200.t1"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	CDS	6549164	6549810	0.91	-	0	transcript_id "Ledus.S5G056200.t1"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	exon	6549164	6549810	.	-	.	transcript_id "Ledus.S5G056200.t1"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	start_codon	6549808	6549810	.	-	0	transcript_id "Ledus.S5G056200.t1"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	transcript	6549076	6549810	.	-	.	transcript_id "Ledus.S5G056200.t2"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	stop_codon	6549073	6549075	.	-	0	transcript_id "Ledus.S5G056200.t2"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	CDS	6549076	6549085	0.98	-	1	transcript_id "Ledus.S5G056200.t2"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	exon	6549076	6549085	.	-	.	transcript_id "Ledus.S5G056200.t2"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	intron	6549086	6549163	.	-	.	transcript_id "Ledus.S5G056200.t2"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	CDS	6549164	6549810	0.8	-	0	transcript_id "Ledus.S5G056200.t2"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	exon	6549164	6549810	.	-	.	transcript_id "Ledus.S5G056200.t2"; gene_id "Ledus.S5G056200"
Ledus.S5	AUGUSTUS	start_codon	6549808	6549810	.	-	0	transcript_id "Ledus.S5G056200.t2"; gene_id "Ledus.S5G056200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11094.t1 is derived from g4712.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1732946	1741267	.	+	.	Ledus.S4G025000
Ledus.S4	AUGUSTUS	transcript	1737779	1741267	.	+	.	transcript_id "Ledus.S4G025000.t1"; gene_id "Ledus.S4G025000"
Ledus.S4	AUGUSTUS	start_codon	1737779	1737781	.	+	0	transcript_id "Ledus.S4G025000.t1"; gene_id "Ledus.S4G025000"
Ledus.S4	AUGUSTUS	CDS	1737779	1741267	0.8	+	0	transcript_id "Ledus.S4G025000.t1"; gene_id "Ledus.S4G025000"
Ledus.S4	AUGUSTUS	exon	1737779	1741267	.	+	.	transcript_id "Ledus.S4G025000.t1"; gene_id "Ledus.S4G025000"
Ledus.S4	AUGUSTUS	stop_codon	1741268	1741270	.	+	0	transcript_id "Ledus.S4G025000.t1"; gene_id "Ledus.S4G025000"
Ledus.S4	AUGUSTUS	transcript	1732946	1741267	.	+	.	transcript_id "Ledus.S4G025000.t2"; gene_id "Ledus.S4G025000"
Ledus.S4	AUGUSTUS	start_codon	1732946	1732948	.	+	0	transcript_id "Ledus.S4G025000.t2"; gene_id "Ledus.S4G025000"
Ledus.S4	AUGUSTUS	CDS	1732946	1741267	0.68	+	0	transcript_id "Ledus.S4G025000.t2"; gene_id "Ledus.S4G025000"
Ledus.S4	AUGUSTUS	exon	1732946	1741267	.	+	.	transcript_id "Ledus.S4G025000.t2"; gene_id "Ledus.S4G025000"
Ledus.S4	AUGUSTUS	stop_codon	1741268	1741270	.	+	0	transcript_id "Ledus.S4G025000.t2"; gene_id "Ledus.S4G025000"
# This transcript jg7093.t2 is derived from g6624.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7094.t1 is derived from g6625.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1512869	1513239	.	-	.	Ledus.C7G015500
Ledus.C7	AUGUSTUS	transcript	1512869	1513239	.	-	.	transcript_id "Ledus.C7G015500.t1"; gene_id "Ledus.C7G015500"
Ledus.C7	AUGUSTUS	stop_codon	1512866	1512868	.	-	0	transcript_id "Ledus.C7G015500.t1"; gene_id "Ledus.C7G015500"
Ledus.C7	AUGUSTUS	CDS	1512869	1513065	1	-	2	transcript_id "Ledus.C7G015500.t1"; gene_id "Ledus.C7G015500"
Ledus.C7	AUGUSTUS	exon	1512869	1513065	.	-	.	transcript_id "Ledus.C7G015500.t1"; gene_id "Ledus.C7G015500"
Ledus.C7	AUGUSTUS	intron	1513066	1513181	.	-	.	transcript_id "Ledus.C7G015500.t1"; gene_id "Ledus.C7G015500"
Ledus.C7	AUGUSTUS	CDS	1513182	1513239	0.99	-	0	transcript_id "Ledus.C7G015500.t1"; gene_id "Ledus.C7G015500"
Ledus.C7	AUGUSTUS	exon	1513182	1513239	.	-	.	transcript_id "Ledus.C7G015500.t1"; gene_id "Ledus.C7G015500"
Ledus.C7	AUGUSTUS	start_codon	1513237	1513239	.	-	0	transcript_id "Ledus.C7G015500.t1"; gene_id "Ledus.C7G015500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12813.t1 is derived from g6435.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14996801	14998484	.	-	.	Ledus.S4G196900
Ledus.S4	AUGUSTUS	transcript	14996801	14998484	.	-	.	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	stop_codon	14996798	14996800	.	-	0	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	CDS	14996801	14997381	0.36	-	2	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	exon	14996801	14997381	.	-	.	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	intron	14997382	14997561	.	-	.	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	CDS	14997562	14997759	0.33	-	2	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	exon	14997562	14997759	.	-	.	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	intron	14997760	14997859	.	-	.	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	CDS	14997860	14997926	0.98	-	0	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	exon	14997860	14997926	.	-	.	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	intron	14997927	14998123	.	-	.	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	CDS	14998124	14998176	0.76	-	2	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	exon	14998124	14998176	.	-	.	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	intron	14998177	14998414	.	-	.	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	CDS	14998415	14998484	0.75	-	0	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	exon	14998415	14998484	.	-	.	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
Ledus.S4	AUGUSTUS	start_codon	14998482	14998484	.	-	0	transcript_id "Ledus.S4G196900.t1"; gene_id "Ledus.S4G196900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9571.t1 is derived from g10601.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7868544	7869409	.	-	.	Ledus.S3G104800
Ledus.S3	AUGUSTUS	transcript	7868544	7869409	.	-	.	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	stop_codon	7868541	7868543	.	-	0	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	CDS	7868544	7868646	0.66	-	1	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	exon	7868544	7868646	.	-	.	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	intron	7868647	7868748	.	-	.	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	CDS	7868749	7868937	0.98	-	1	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	exon	7868749	7868937	.	-	.	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	intron	7868938	7869096	.	-	.	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	CDS	7869097	7869257	1	-	0	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	exon	7869097	7869257	.	-	.	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	intron	7869258	7869406	.	-	.	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	CDS	7869407	7869409	1	-	0	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	exon	7869407	7869409	.	-	.	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
Ledus.S3	AUGUSTUS	start_codon	7869407	7869409	.	-	0	transcript_id "Ledus.S3G104800.t1"; gene_id "Ledus.S3G104800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4679.t1 is derived from g2117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18963456	18963926	.	-	.	Ledus.S1G210000
Ledus.S1	AUGUSTUS	transcript	18963456	18963926	.	-	.	transcript_id "Ledus.S1G210000.t1"; gene_id "Ledus.S1G210000"
Ledus.S1	AUGUSTUS	stop_codon	18963453	18963455	.	-	0	transcript_id "Ledus.S1G210000.t1"; gene_id "Ledus.S1G210000"
Ledus.S1	AUGUSTUS	CDS	18963456	18963926	0.72	-	0	transcript_id "Ledus.S1G210000.t1"; gene_id "Ledus.S1G210000"
Ledus.S1	AUGUSTUS	exon	18963456	18963926	.	-	.	transcript_id "Ledus.S1G210000.t1"; gene_id "Ledus.S1G210000"
Ledus.S1	AUGUSTUS	start_codon	18963924	18963926	.	-	0	transcript_id "Ledus.S1G210000.t1"; gene_id "Ledus.S1G210000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3604.t1 is derived from g1040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10041919	10045332	.	-	.	Ledus.S1G102500
Ledus.S1	AUGUSTUS	transcript	10041919	10045332	.	-	.	transcript_id "Ledus.S1G102500.t1"; gene_id "Ledus.S1G102500"
Ledus.S1	AUGUSTUS	stop_codon	10041916	10041918	.	-	0	transcript_id "Ledus.S1G102500.t1"; gene_id "Ledus.S1G102500"
Ledus.S1	AUGUSTUS	CDS	10041919	10045332	0.85	-	0	transcript_id "Ledus.S1G102500.t1"; gene_id "Ledus.S1G102500"
Ledus.S1	AUGUSTUS	exon	10041919	10045332	.	-	.	transcript_id "Ledus.S1G102500.t1"; gene_id "Ledus.S1G102500"
Ledus.S1	AUGUSTUS	start_codon	10045330	10045332	.	-	0	transcript_id "Ledus.S1G102500.t1"; gene_id "Ledus.S1G102500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8589.t1 is derived from g9619.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	481297	483143	.	+	.	Ledus.S3G006600
Ledus.S3	AUGUSTUS	transcript	481297	483143	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	start_codon	481297	481299	.	+	0	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	481297	481355	0.99	+	0	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	481297	481355	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	481356	481440	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	481441	481540	1	+	1	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	481441	481540	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	481541	481622	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	481623	481700	1	+	0	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	481623	481700	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	481701	481780	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	481781	481879	1	+	0	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	481781	481879	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	481880	481952	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	481953	482005	1	+	0	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	481953	482005	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	482006	482140	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	482141	482235	1	+	1	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	482141	482235	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	482236	482464	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	482465	482556	1	+	2	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	482465	482556	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	482557	482673	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	482674	482742	1	+	0	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	482674	482742	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	482743	482832	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	482833	482922	1	+	0	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	482833	482922	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	482923	483002	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	483003	483143	1	+	0	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	483003	483143	.	+	.	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	stop_codon	483144	483146	.	+	0	transcript_id "Ledus.S3G006600.t1"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	transcript	481297	483143	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	start_codon	481297	481299	.	+	0	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	481297	481355	0.99	+	0	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	481297	481355	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	481356	481440	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	481441	481540	1	+	1	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	481441	481540	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	481541	481622	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	481623	481700	1	+	0	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	481623	481700	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	481701	481780	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	481781	481879	1	+	0	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	481781	481879	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	481880	481952	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	481953	482005	1	+	0	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	481953	482005	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	482006	482140	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	482141	482235	1	+	1	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	482141	482235	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	482236	482393	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	482394	482405	0.95	+	2	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	482394	482405	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	482406	482503	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	482504	482556	0.8	+	2	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	482504	482556	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	482557	482673	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	482674	482742	0.96	+	0	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	482674	482742	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	482743	482832	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	482833	482922	1	+	0	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	482833	482922	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	intron	482923	483002	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	CDS	483003	483143	1	+	0	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	exon	483003	483143	.	+	.	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
Ledus.S3	AUGUSTUS	stop_codon	483144	483146	.	+	0	transcript_id "Ledus.S3G006600.t2"; gene_id "Ledus.S3G006600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2700.t1 is derived from g133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2084047	2084751	.	-	.	Ledus.S1G012100
Ledus.S1	AUGUSTUS	transcript	2084047	2084751	.	-	.	transcript_id "Ledus.S1G012100.t1"; gene_id "Ledus.S1G012100"
Ledus.S1	AUGUSTUS	stop_codon	2084044	2084046	.	-	0	transcript_id "Ledus.S1G012100.t1"; gene_id "Ledus.S1G012100"
Ledus.S1	AUGUSTUS	CDS	2084047	2084751	0.94	-	0	transcript_id "Ledus.S1G012100.t1"; gene_id "Ledus.S1G012100"
Ledus.S1	AUGUSTUS	exon	2084047	2084751	.	-	.	transcript_id "Ledus.S1G012100.t1"; gene_id "Ledus.S1G012100"
Ledus.S1	AUGUSTUS	start_codon	2084749	2084751	.	-	0	transcript_id "Ledus.S1G012100.t1"; gene_id "Ledus.S1G012100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7512.t1 is derived from g12183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3525738	3526208	.	-	.	Ledus.S5G029000
Ledus.S5	AUGUSTUS	transcript	3525738	3526208	.	-	.	transcript_id "Ledus.S5G029000.t1"; gene_id "Ledus.S5G029000"
Ledus.S5	AUGUSTUS	stop_codon	3525735	3525737	.	-	0	transcript_id "Ledus.S5G029000.t1"; gene_id "Ledus.S5G029000"
Ledus.S5	AUGUSTUS	CDS	3525738	3526208	0.85	-	0	transcript_id "Ledus.S5G029000.t1"; gene_id "Ledus.S5G029000"
Ledus.S5	AUGUSTUS	exon	3525738	3526208	.	-	.	transcript_id "Ledus.S5G029000.t1"; gene_id "Ledus.S5G029000"
Ledus.S5	AUGUSTUS	start_codon	3526206	3526208	.	-	0	transcript_id "Ledus.S5G029000.t1"; gene_id "Ledus.S5G029000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1047.t1 is derived from g7908.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6959768	6960286	.	-	.	Ledus.S2G092900
Ledus.S2	AUGUSTUS	transcript	6959768	6960286	.	-	.	transcript_id "Ledus.S2G092900.t1"; gene_id "Ledus.S2G092900"
Ledus.S2	AUGUSTUS	stop_codon	6959765	6959767	.	-	0	transcript_id "Ledus.S2G092900.t1"; gene_id "Ledus.S2G092900"
Ledus.S2	AUGUSTUS	CDS	6959768	6960286	0.94	-	0	transcript_id "Ledus.S2G092900.t1"; gene_id "Ledus.S2G092900"
Ledus.S2	AUGUSTUS	exon	6959768	6960286	.	-	.	transcript_id "Ledus.S2G092900.t1"; gene_id "Ledus.S2G092900"
Ledus.S2	AUGUSTUS	start_codon	6960284	6960286	.	-	0	transcript_id "Ledus.S2G092900.t1"; gene_id "Ledus.S2G092900"
# This transcript jg7534.t2 is derived from g12205.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg7534.t3 is derived from g12205.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7535.t1 is derived from g12206.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3679124	3681357	.	-	.	Ledus.S5G031300
Ledus.S5	AUGUSTUS	transcript	3679124	3681357	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	stop_codon	3679121	3679123	.	-	0	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	CDS	3679124	3679159	0.77	-	0	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	exon	3679124	3679159	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	intron	3679160	3679340	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	CDS	3679341	3679352	0.66	-	0	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	exon	3679341	3679352	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	intron	3679353	3679442	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	CDS	3679443	3679478	0.66	-	0	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	exon	3679443	3679478	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	intron	3679479	3679574	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	CDS	3679575	3679709	0.99	-	0	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	exon	3679575	3679709	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	intron	3679710	3679831	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	CDS	3679832	3680023	1	-	0	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	exon	3679832	3680023	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	intron	3680024	3680123	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	CDS	3680124	3680266	0.53	-	2	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	exon	3680124	3680266	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	intron	3680267	3680402	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	CDS	3680403	3680457	0.78	-	0	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	exon	3680403	3680457	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	intron	3680458	3680547	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	CDS	3680548	3680614	0.99	-	1	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	exon	3680548	3680614	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	intron	3680615	3680786	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	CDS	3680787	3680792	0.97	-	1	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	exon	3680787	3680792	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	intron	3680793	3680964	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	CDS	3680965	3681004	0.63	-	2	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	exon	3680965	3681004	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	intron	3681005	3681149	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	CDS	3681150	3681357	0.41	-	0	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	exon	3681150	3681357	.	-	.	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
Ledus.S5	AUGUSTUS	start_codon	3681355	3681357	.	-	0	transcript_id "Ledus.S5G031300.t1"; gene_id "Ledus.S5G031300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2904.t1 is derived from g339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4499990	4504660	.	-	.	Ledus.S1G032500
Ledus.S1	AUGUSTUS	transcript	4499990	4504660	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	stop_codon	4499987	4499989	.	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4499990	4500100	0.98	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4499990	4500100	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4500101	4500208	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4500209	4500289	0.99	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4500209	4500289	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4500290	4500411	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4500412	4500492	1	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4500412	4500492	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4500493	4500612	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4500613	4500693	1	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4500613	4500693	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4500694	4500770	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4500771	4500908	1	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4500771	4500908	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4500909	4501045	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4501046	4501177	1	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4501046	4501177	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4501178	4501390	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4501391	4501451	1	-	1	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4501391	4501451	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4501452	4501552	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4501553	4501659	1	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4501553	4501659	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4501660	4501821	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4501822	4501875	1	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4501822	4501875	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4501876	4501982	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4501983	4502084	0.98	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4501983	4502084	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4502085	4502213	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4502214	4502339	1	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4502214	4502339	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4502340	4502427	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4502428	4502715	0.97	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4502428	4502715	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4502716	4502795	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4502796	4502918	1	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4502796	4502918	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4502919	4503001	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4503002	4503182	1	-	1	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4503002	4503182	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4503183	4503348	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4503349	4503695	0.76	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4503349	4503695	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4503696	4503829	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4503830	4503945	0.99	-	2	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4503830	4503945	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	intron	4503946	4504413	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	CDS	4504414	4504660	0.97	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	exon	4504414	4504660	.	-	.	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
Ledus.S1	AUGUSTUS	start_codon	4504658	4504660	.	-	0	transcript_id "Ledus.S1G032500.t1"; gene_id "Ledus.S1G032500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7513.t1 is derived from g12184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3529469	3529933	.	-	.	Ledus.S5G029100
Ledus.S5	AUGUSTUS	transcript	3529469	3529933	.	-	.	transcript_id "Ledus.S5G029100.t1"; gene_id "Ledus.S5G029100"
Ledus.S5	AUGUSTUS	stop_codon	3529466	3529468	.	-	0	transcript_id "Ledus.S5G029100.t1"; gene_id "Ledus.S5G029100"
Ledus.S5	AUGUSTUS	CDS	3529469	3529933	0.59	-	0	transcript_id "Ledus.S5G029100.t1"; gene_id "Ledus.S5G029100"
Ledus.S5	AUGUSTUS	exon	3529469	3529933	.	-	.	transcript_id "Ledus.S5G029100.t1"; gene_id "Ledus.S5G029100"
Ledus.S5	AUGUSTUS	start_codon	3529931	3529933	.	-	0	transcript_id "Ledus.S5G029100.t1"; gene_id "Ledus.S5G029100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10489.t1 is derived from g11519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15583436	15584020	.	-	.	Ledus.S3G196600
Ledus.S3	AUGUSTUS	transcript	15583436	15584020	.	-	.	transcript_id "Ledus.S3G196600.t1"; gene_id "Ledus.S3G196600"
Ledus.S3	AUGUSTUS	stop_codon	15583433	15583435	.	-	0	transcript_id "Ledus.S3G196600.t1"; gene_id "Ledus.S3G196600"
Ledus.S3	AUGUSTUS	CDS	15583436	15583544	1	-	1	transcript_id "Ledus.S3G196600.t1"; gene_id "Ledus.S3G196600"
Ledus.S3	AUGUSTUS	exon	15583436	15583544	.	-	.	transcript_id "Ledus.S3G196600.t1"; gene_id "Ledus.S3G196600"
Ledus.S3	AUGUSTUS	intron	15583545	15583628	.	-	.	transcript_id "Ledus.S3G196600.t1"; gene_id "Ledus.S3G196600"
Ledus.S3	AUGUSTUS	CDS	15583629	15583786	0.67	-	0	transcript_id "Ledus.S3G196600.t1"; gene_id "Ledus.S3G196600"
Ledus.S3	AUGUSTUS	exon	15583629	15583786	.	-	.	transcript_id "Ledus.S3G196600.t1"; gene_id "Ledus.S3G196600"
Ledus.S3	AUGUSTUS	intron	15583787	15583888	.	-	.	transcript_id "Ledus.S3G196600.t1"; gene_id "Ledus.S3G196600"
Ledus.S3	AUGUSTUS	CDS	15583889	15584020	0.81	-	0	transcript_id "Ledus.S3G196600.t1"; gene_id "Ledus.S3G196600"
Ledus.S3	AUGUSTUS	exon	15583889	15584020	.	-	.	transcript_id "Ledus.S3G196600.t1"; gene_id "Ledus.S3G196600"
Ledus.S3	AUGUSTUS	start_codon	15584018	15584020	.	-	0	transcript_id "Ledus.S3G196600.t1"; gene_id "Ledus.S3G196600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg927.t1 is derived from g7788.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6186168	6186440	.	+	.	Ledus.S2G080900
Ledus.S2	AUGUSTUS	transcript	6186168	6186440	.	+	.	transcript_id "Ledus.S2G080900.t1"; gene_id "Ledus.S2G080900"
Ledus.S2	AUGUSTUS	start_codon	6186168	6186170	.	+	0	transcript_id "Ledus.S2G080900.t1"; gene_id "Ledus.S2G080900"
Ledus.S2	AUGUSTUS	CDS	6186168	6186440	0.53	+	0	transcript_id "Ledus.S2G080900.t1"; gene_id "Ledus.S2G080900"
Ledus.S2	AUGUSTUS	exon	6186168	6186440	.	+	.	transcript_id "Ledus.S2G080900.t1"; gene_id "Ledus.S2G080900"
Ledus.S2	AUGUSTUS	stop_codon	6186441	6186443	.	+	0	transcript_id "Ledus.S2G080900.t1"; gene_id "Ledus.S2G080900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11554.t1 is derived from g5172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5256173	5259155	.	+	.	Ledus.S4G071000
Ledus.S4	AUGUSTUS	transcript	5256173	5259155	.	+	.	transcript_id "Ledus.S4G071000.t1"; gene_id "Ledus.S4G071000"
Ledus.S4	AUGUSTUS	start_codon	5256173	5256175	.	+	0	transcript_id "Ledus.S4G071000.t1"; gene_id "Ledus.S4G071000"
Ledus.S4	AUGUSTUS	CDS	5256173	5256222	0.91	+	0	transcript_id "Ledus.S4G071000.t1"; gene_id "Ledus.S4G071000"
Ledus.S4	AUGUSTUS	exon	5256173	5256222	.	+	.	transcript_id "Ledus.S4G071000.t1"; gene_id "Ledus.S4G071000"
Ledus.S4	AUGUSTUS	intron	5256223	5256314	.	+	.	transcript_id "Ledus.S4G071000.t1"; gene_id "Ledus.S4G071000"
Ledus.S4	AUGUSTUS	CDS	5256315	5256374	1	+	1	transcript_id "Ledus.S4G071000.t1"; gene_id "Ledus.S4G071000"
Ledus.S4	AUGUSTUS	exon	5256315	5256374	.	+	.	transcript_id "Ledus.S4G071000.t1"; gene_id "Ledus.S4G071000"
Ledus.S4	AUGUSTUS	intron	5256375	5256526	.	+	.	transcript_id "Ledus.S4G071000.t1"; gene_id "Ledus.S4G071000"
Ledus.S4	AUGUSTUS	CDS	5256527	5259155	1	+	1	transcript_id "Ledus.S4G071000.t1"; gene_id "Ledus.S4G071000"
Ledus.S4	AUGUSTUS	exon	5256527	5259155	.	+	.	transcript_id "Ledus.S4G071000.t1"; gene_id "Ledus.S4G071000"
Ledus.S4	AUGUSTUS	stop_codon	5259156	5259158	.	+	0	transcript_id "Ledus.S4G071000.t1"; gene_id "Ledus.S4G071000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10958.t1 is derived from g4576.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	904000	907531	.	-	.	Ledus.S4G011400
Ledus.S4	AUGUSTUS	transcript	904000	907531	.	-	.	transcript_id "Ledus.S4G011400.t1"; gene_id "Ledus.S4G011400"
Ledus.S4	AUGUSTUS	stop_codon	903997	903999	.	-	0	transcript_id "Ledus.S4G011400.t1"; gene_id "Ledus.S4G011400"
Ledus.S4	AUGUSTUS	CDS	904000	906043	1	-	1	transcript_id "Ledus.S4G011400.t1"; gene_id "Ledus.S4G011400"
Ledus.S4	AUGUSTUS	exon	904000	906043	.	-	.	transcript_id "Ledus.S4G011400.t1"; gene_id "Ledus.S4G011400"
Ledus.S4	AUGUSTUS	intron	906044	907190	.	-	.	transcript_id "Ledus.S4G011400.t1"; gene_id "Ledus.S4G011400"
Ledus.S4	AUGUSTUS	CDS	907191	907531	1	-	0	transcript_id "Ledus.S4G011400.t1"; gene_id "Ledus.S4G011400"
Ledus.S4	AUGUSTUS	exon	907191	907531	.	-	.	transcript_id "Ledus.S4G011400.t1"; gene_id "Ledus.S4G011400"
Ledus.S4	AUGUSTUS	start_codon	907529	907531	.	-	0	transcript_id "Ledus.S4G011400.t1"; gene_id "Ledus.S4G011400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1048.t1 is derived from g7909.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6998357	6999397	.	+	.	Ledus.S2G093000
Ledus.S2	AUGUSTUS	transcript	6998357	6999397	.	+	.	transcript_id "Ledus.S2G093000.t1"; gene_id "Ledus.S2G093000"
Ledus.S2	AUGUSTUS	start_codon	6998357	6998359	.	+	0	transcript_id "Ledus.S2G093000.t1"; gene_id "Ledus.S2G093000"
Ledus.S2	AUGUSTUS	CDS	6998357	6999397	0.96	+	0	transcript_id "Ledus.S2G093000.t1"; gene_id "Ledus.S2G093000"
Ledus.S2	AUGUSTUS	exon	6998357	6999397	.	+	.	transcript_id "Ledus.S2G093000.t1"; gene_id "Ledus.S2G093000"
Ledus.S2	AUGUSTUS	stop_codon	6999398	6999400	.	+	0	transcript_id "Ledus.S2G093000.t1"; gene_id "Ledus.S2G093000"
# This transcript jg8470.t2 is derived from g13142.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg8471.t1 is derived from g13143.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12064340	12068173	.	+	.	Ledus.S5G124900
Ledus.S5	AUGUSTUS	transcript	12064340	12066381	.	+	.	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	start_codon	12064340	12064342	.	+	0	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12064340	12064793	0.71	+	0	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12064340	12064793	.	+	.	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12064794	12064886	.	+	.	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12064887	12064985	0.84	+	2	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12064887	12064985	.	+	.	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12064986	12065455	.	+	.	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12065456	12065576	0.9	+	2	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12065456	12065576	.	+	.	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12065577	12065856	.	+	.	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12065857	12066080	0.99	+	1	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12065857	12066080	.	+	.	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12066081	12066304	.	+	.	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12066305	12066381	0.84	+	2	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12066305	12066381	.	+	.	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	stop_codon	12066382	12066384	.	+	0	transcript_id "Ledus.S5G124900.t1"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	transcript	12064340	12068173	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	start_codon	12064340	12064342	.	+	0	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12064340	12064793	0.79	+	0	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12064340	12064793	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12064794	12064886	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12064887	12064985	0.89	+	2	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12064887	12064985	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12064986	12065455	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12065456	12065576	0.91	+	2	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12065456	12065576	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12065577	12065856	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12065857	12066080	1	+	1	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12065857	12066080	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12066081	12067151	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12067152	12067168	0.8	+	2	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12067152	12067168	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12067169	12067236	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12067237	12067324	0.83	+	0	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12067237	12067324	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12067325	12067537	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12067538	12067680	1	+	2	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12067538	12067680	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12067681	12067768	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12067769	12067918	0.86	+	0	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12067769	12067918	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12067919	12068029	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12068030	12068173	0.45	+	0	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12068030	12068173	.	+	.	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	stop_codon	12068174	12068176	.	+	0	transcript_id "Ledus.S5G124900.t2"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	transcript	12064340	12068173	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	start_codon	12064340	12064342	.	+	0	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12064340	12064793	0.74	+	0	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12064340	12064793	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12064794	12064886	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12064887	12064985	0.81	+	2	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12064887	12064985	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12064986	12065455	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12065456	12065576	0.93	+	2	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12065456	12065576	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12065577	12065856	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12065857	12066080	1	+	1	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12065857	12066080	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12066081	12067222	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12067223	12067324	0.62	+	2	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12067223	12067324	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12067325	12067537	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12067538	12067680	1	+	2	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12067538	12067680	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12067681	12067768	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12067769	12067918	0.92	+	0	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12067769	12067918	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	intron	12067919	12068029	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	CDS	12068030	12068173	0.39	+	0	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	exon	12068030	12068173	.	+	.	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
Ledus.S5	AUGUSTUS	stop_codon	12068174	12068176	.	+	0	transcript_id "Ledus.S5G124900.t3"; gene_id "Ledus.S5G124900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg870.t1 is derived from g7731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5899596	5900612	.	+	.	Ledus.S2G075200
Ledus.S2	AUGUSTUS	transcript	5899596	5900612	.	+	.	transcript_id "Ledus.S2G075200.t1"; gene_id "Ledus.S2G075200"
Ledus.S2	AUGUSTUS	start_codon	5899596	5899598	.	+	0	transcript_id "Ledus.S2G075200.t1"; gene_id "Ledus.S2G075200"
Ledus.S2	AUGUSTUS	CDS	5899596	5900612	0.99	+	0	transcript_id "Ledus.S2G075200.t1"; gene_id "Ledus.S2G075200"
Ledus.S2	AUGUSTUS	exon	5899596	5900612	.	+	.	transcript_id "Ledus.S2G075200.t1"; gene_id "Ledus.S2G075200"
Ledus.S2	AUGUSTUS	stop_codon	5900613	5900615	.	+	0	transcript_id "Ledus.S2G075200.t1"; gene_id "Ledus.S2G075200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8029.t1 is derived from g12700.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8590476	8591228	.	+	.	Ledus.S5G080700
Ledus.S5	AUGUSTUS	transcript	8590476	8591228	.	+	.	transcript_id "Ledus.S5G080700.t1"; gene_id "Ledus.S5G080700"
Ledus.S5	AUGUSTUS	start_codon	8590476	8590478	.	+	0	transcript_id "Ledus.S5G080700.t1"; gene_id "Ledus.S5G080700"
Ledus.S5	AUGUSTUS	CDS	8590476	8591228	0.8	+	0	transcript_id "Ledus.S5G080700.t1"; gene_id "Ledus.S5G080700"
Ledus.S5	AUGUSTUS	exon	8590476	8591228	.	+	.	transcript_id "Ledus.S5G080700.t1"; gene_id "Ledus.S5G080700"
Ledus.S5	AUGUSTUS	stop_codon	8591229	8591231	.	+	0	transcript_id "Ledus.S5G080700.t1"; gene_id "Ledus.S5G080700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1468.t1 is derived from g8329.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10356176	10358231	.	-	.	Ledus.S2G135000
Ledus.S2	AUGUSTUS	transcript	10356176	10358231	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	stop_codon	10356173	10356175	.	-	0	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	CDS	10356176	10356598	0.89	-	0	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	exon	10356176	10356598	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	intron	10356599	10356713	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	CDS	10356714	10356929	0.95	-	0	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	exon	10356714	10356929	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	intron	10356930	10357027	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	CDS	10357028	10357161	1	-	2	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	exon	10357028	10357161	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	intron	10357162	10357266	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	CDS	10357267	10357481	0.75	-	1	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	exon	10357267	10357481	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	intron	10357482	10357603	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	CDS	10357604	10357697	0.59	-	2	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	exon	10357604	10357697	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	intron	10357698	10357806	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	CDS	10357807	10358040	0.59	-	2	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	exon	10357807	10358040	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	intron	10358041	10358122	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	CDS	10358123	10358231	0.47	-	0	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	exon	10358123	10358231	.	-	.	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
Ledus.S2	AUGUSTUS	start_codon	10358229	10358231	.	-	0	transcript_id "Ledus.S2G135000.t1"; gene_id "Ledus.S2G135000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5957.t1 is derived from g3400.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28046759	28047305	.	-	.	Ledus.S1G337800
Ledus.S1	AUGUSTUS	transcript	28046759	28047305	.	-	.	transcript_id "Ledus.S1G337800.t1"; gene_id "Ledus.S1G337800"
Ledus.S1	AUGUSTUS	stop_codon	28046756	28046758	.	-	0	transcript_id "Ledus.S1G337800.t1"; gene_id "Ledus.S1G337800"
Ledus.S1	AUGUSTUS	CDS	28046759	28047180	0.98	-	2	transcript_id "Ledus.S1G337800.t1"; gene_id "Ledus.S1G337800"
Ledus.S1	AUGUSTUS	exon	28046759	28047180	.	-	.	transcript_id "Ledus.S1G337800.t1"; gene_id "Ledus.S1G337800"
Ledus.S1	AUGUSTUS	intron	28047181	28047280	.	-	.	transcript_id "Ledus.S1G337800.t1"; gene_id "Ledus.S1G337800"
Ledus.S1	AUGUSTUS	CDS	28047281	28047305	0.71	-	0	transcript_id "Ledus.S1G337800.t1"; gene_id "Ledus.S1G337800"
Ledus.S1	AUGUSTUS	exon	28047281	28047305	.	-	.	transcript_id "Ledus.S1G337800.t1"; gene_id "Ledus.S1G337800"
Ledus.S1	AUGUSTUS	start_codon	28047303	28047305	.	-	0	transcript_id "Ledus.S1G337800.t1"; gene_id "Ledus.S1G337800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4533.t1 is derived from g1970.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17568515	17571911	.	-	.	Ledus.S1G195400
Ledus.S1	AUGUSTUS	transcript	17568515	17571911	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	stop_codon	17568512	17568514	.	-	0	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	CDS	17568515	17568898	0.99	-	0	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	exon	17568515	17568898	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	intron	17568899	17569049	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	CDS	17569050	17569106	1	-	0	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	exon	17569050	17569106	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	intron	17569107	17569186	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	CDS	17569187	17569321	1	-	0	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	exon	17569187	17569321	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	intron	17569322	17569425	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	CDS	17569426	17569506	1	-	0	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	exon	17569426	17569506	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	intron	17569507	17569687	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	CDS	17569688	17569756	1	-	0	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	exon	17569688	17569756	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	intron	17569757	17569883	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	CDS	17569884	17569955	1	-	0	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	exon	17569884	17569955	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	intron	17569956	17570085	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	CDS	17570086	17570172	1	-	0	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	exon	17570086	17570172	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	intron	17570173	17570319	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	CDS	17570320	17570400	1	-	0	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	exon	17570320	17570400	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	intron	17570401	17570504	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	CDS	17570505	17570623	0.94	-	2	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	exon	17570505	17570623	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	intron	17570624	17570768	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	CDS	17570769	17570934	1	-	0	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	exon	17570769	17570934	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	intron	17570935	17571082	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	CDS	17571083	17571212	1	-	1	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	exon	17571083	17571212	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	intron	17571213	17571447	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	CDS	17571448	17571911	0.97	-	0	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	exon	17571448	17571911	.	-	.	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
Ledus.S1	AUGUSTUS	start_codon	17571909	17571911	.	-	0	transcript_id "Ledus.S1G195400.t1"; gene_id "Ledus.S1G195400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1675.t1 is derived from g8536.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11798113	11799130	.	-	.	Ledus.S2G155700
Ledus.S2	AUGUSTUS	transcript	11798113	11799130	.	-	.	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	stop_codon	11798110	11798112	.	-	0	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	CDS	11798113	11798120	1	-	2	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	exon	11798113	11798120	.	-	.	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	intron	11798121	11798283	.	-	.	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	CDS	11798284	11798452	1	-	0	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	exon	11798284	11798452	.	-	.	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	intron	11798453	11798532	.	-	.	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	CDS	11798533	11798537	1	-	2	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	exon	11798533	11798537	.	-	.	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	intron	11798538	11798691	.	-	.	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	CDS	11798692	11799130	1	-	0	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	exon	11798692	11799130	.	-	.	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
Ledus.S2	AUGUSTUS	start_codon	11799128	11799130	.	-	0	transcript_id "Ledus.S2G155700.t1"; gene_id "Ledus.S2G155700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3776.t1 is derived from g1212.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11930617	11943091	.	-	.	Ledus.S1G119700
Ledus.S1	AUGUSTUS	transcript	11930617	11943091	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	stop_codon	11930614	11930616	.	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11930617	11930617	1	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11930617	11930617	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11930618	11930716	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11930717	11930832	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11930717	11930832	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11930833	11930913	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11930914	11930989	1	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11930914	11930989	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11930990	11931059	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11931060	11931109	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11931060	11931109	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11931110	11931196	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11931197	11931408	0.98	-	2	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11931197	11931408	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11931409	11931672	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11931673	11931731	0.92	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11931673	11931731	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11931732	11931828	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11931829	11932093	1	-	2	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11931829	11932093	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11932094	11932181	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11932182	11932303	1	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11932182	11932303	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11932304	11932406	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11932407	11932546	0.87	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11932407	11932546	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11932547	11932672	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11932673	11933033	1	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11932673	11933033	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11933034	11933128	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11933129	11933643	0.96	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11933129	11933643	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11933644	11933735	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11933736	11933857	1	-	2	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11933736	11933857	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11933858	11934033	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11934034	11934157	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11934034	11934157	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11934158	11934243	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11934244	11934356	1	-	2	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11934244	11934356	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11934357	11934438	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11934439	11934554	0.88	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11934439	11934554	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11934555	11934655	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11934656	11934741	0.89	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11934656	11934741	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11934742	11934920	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11934921	11935049	0.67	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11934921	11935049	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11935050	11935164	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11935165	11935367	0.67	-	2	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11935165	11935367	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11935368	11935460	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11935461	11935600	1	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11935461	11935600	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11935601	11935696	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11935697	11935755	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11935697	11935755	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11935756	11935886	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11935887	11935935	1	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11935887	11935935	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11935936	11936254	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11936255	11936307	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11936255	11936307	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11936308	11936401	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11936402	11936755	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11936402	11936755	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11936756	11936850	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11936851	11936894	1	-	2	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11936851	11936894	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11936895	11937101	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11937102	11937330	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11937102	11937330	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11937331	11937429	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11937430	11937516	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11937430	11937516	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11937517	11937821	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11937822	11937881	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11937822	11937881	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11937882	11937974	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11937975	11938040	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11937975	11938040	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11938041	11938282	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11938283	11938373	0.99	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11938283	11938373	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11938374	11938493	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11938494	11938591	0.96	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11938494	11938591	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11938592	11938693	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11938694	11938751	0.97	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11938694	11938751	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11938752	11938836	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11938837	11938982	0.99	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11938837	11938982	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11938983	11939083	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11939084	11939232	0.99	-	2	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11939084	11939232	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11939233	11939491	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11939492	11939555	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11939492	11939555	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11939556	11939704	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11939705	11939774	1	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11939705	11939774	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11939775	11940082	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11940083	11940135	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11940083	11940135	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11940136	11940220	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11940221	11940301	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11940221	11940301	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11940302	11940431	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11940432	11940533	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11940432	11940533	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11940534	11940645	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11940646	11940705	0.58	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11940646	11940705	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11940706	11940827	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11940828	11940884	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11940828	11940884	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11940885	11940962	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11940963	11941017	1	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11940963	11941017	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11941018	11941298	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11941299	11941354	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11941299	11941354	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11941355	11941453	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11941454	11941580	1	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11941454	11941580	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11941581	11941749	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11941750	11941905	1	-	1	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11941750	11941905	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11941906	11942114	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11942115	11942188	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11942115	11942188	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11942189	11942335	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11942336	11942425	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11942336	11942425	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11942426	11942649	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11942650	11942835	1	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11942650	11942835	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	intron	11942836	11942986	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	CDS	11942987	11943091	0.77	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	exon	11942987	11943091	.	-	.	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
Ledus.S1	AUGUSTUS	start_codon	11943089	11943091	.	-	0	transcript_id "Ledus.S1G119700.t1"; gene_id "Ledus.S1G119700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7360.t1 is derived from g12031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1443268	1444307	.	+	.	Ledus.S5G013800
Ledus.S5	AUGUSTUS	transcript	1443268	1444307	.	+	.	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	start_codon	1443268	1443270	.	+	0	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	CDS	1443268	1443456	0.99	+	0	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	exon	1443268	1443456	.	+	.	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	intron	1443457	1443600	.	+	.	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	CDS	1443601	1443744	1	+	0	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	exon	1443601	1443744	.	+	.	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	intron	1443745	1443899	.	+	.	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	CDS	1443900	1444042	0.99	+	0	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	exon	1443900	1444042	.	+	.	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	intron	1444043	1444138	.	+	.	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	CDS	1444139	1444307	0.99	+	1	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	exon	1444139	1444307	.	+	.	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
Ledus.S5	AUGUSTUS	stop_codon	1444308	1444310	.	+	0	transcript_id "Ledus.S5G013800.t1"; gene_id "Ledus.S5G013800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8887.t1 is derived from g9917.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2839209	2840761	.	-	.	Ledus.S3G036400
Ledus.S3	AUGUSTUS	transcript	2839209	2840761	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	stop_codon	2839206	2839208	.	-	0	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	CDS	2839209	2839272	1	-	1	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	exon	2839209	2839272	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	intron	2839273	2839361	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	CDS	2839362	2839453	1	-	0	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	exon	2839362	2839453	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	intron	2839454	2839524	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	CDS	2839525	2839602	1	-	0	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	exon	2839525	2839602	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	intron	2839603	2839810	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	CDS	2839811	2839866	1	-	2	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	exon	2839811	2839866	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	intron	2839867	2839959	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	CDS	2839960	2840162	0.88	-	1	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	exon	2839960	2840162	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	intron	2840163	2840365	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	CDS	2840366	2840423	0.89	-	2	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	exon	2840366	2840423	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	intron	2840424	2840622	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	CDS	2840623	2840761	0.07	-	0	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	exon	2840623	2840761	.	-	.	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
Ledus.S3	AUGUSTUS	start_codon	2840759	2840761	.	-	0	transcript_id "Ledus.S3G036400.t1"; gene_id "Ledus.S3G036400"
# This transcript jg5072.t2 is derived from g2511.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5073.t1 is derived from g2512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21462885	21465399	.	+	.	Ledus.S1G249400
Ledus.S1	AUGUSTUS	transcript	21462885	21465399	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	start_codon	21462885	21462887	.	+	0	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	CDS	21462885	21462974	0.84	+	0	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	exon	21462885	21462974	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	intron	21462975	21463048	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	CDS	21463049	21463251	0.96	+	0	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	exon	21463049	21463251	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	intron	21463252	21463354	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	CDS	21463355	21463463	0.96	+	1	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	exon	21463355	21463463	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	intron	21463464	21463545	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	CDS	21463546	21463687	1	+	0	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	exon	21463546	21463687	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	intron	21463688	21463762	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	CDS	21463763	21463941	1	+	2	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	exon	21463763	21463941	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	intron	21463942	21464046	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	CDS	21464047	21464123	1	+	0	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	exon	21464047	21464123	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	intron	21464124	21464215	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	CDS	21464216	21464283	1	+	1	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	exon	21464216	21464283	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	intron	21464284	21464377	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	CDS	21464378	21464493	1	+	2	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	exon	21464378	21464493	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	intron	21464494	21464612	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	CDS	21464613	21464719	1	+	0	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	exon	21464613	21464719	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	intron	21464720	21464838	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	CDS	21464839	21464981	1	+	1	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	exon	21464839	21464981	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	intron	21464982	21465115	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	CDS	21465116	21465399	0.97	+	2	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	exon	21465116	21465399	.	+	.	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
Ledus.S1	AUGUSTUS	stop_codon	21465400	21465402	.	+	0	transcript_id "Ledus.S1G249400.t1"; gene_id "Ledus.S1G249400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12367.t1 is derived from g5988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11460978	11462534	.	+	.	Ledus.S4G152300
Ledus.S4	AUGUSTUS	transcript	11460978	11462534	.	+	.	transcript_id "Ledus.S4G152300.t1"; gene_id "Ledus.S4G152300"
Ledus.S4	AUGUSTUS	start_codon	11460978	11460980	.	+	0	transcript_id "Ledus.S4G152300.t1"; gene_id "Ledus.S4G152300"
Ledus.S4	AUGUSTUS	CDS	11460978	11462534	1	+	0	transcript_id "Ledus.S4G152300.t1"; gene_id "Ledus.S4G152300"
Ledus.S4	AUGUSTUS	exon	11460978	11462534	.	+	.	transcript_id "Ledus.S4G152300.t1"; gene_id "Ledus.S4G152300"
Ledus.S4	AUGUSTUS	stop_codon	11462535	11462537	.	+	0	transcript_id "Ledus.S4G152300.t1"; gene_id "Ledus.S4G152300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2494.t1 is derived from g9357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18472981	18475182	.	-	.	Ledus.S2G237600
Ledus.S2	AUGUSTUS	transcript	18472981	18475182	.	-	.	transcript_id "Ledus.S2G237600.t1"; gene_id "Ledus.S2G237600"
Ledus.S2	AUGUSTUS	stop_codon	18472978	18472980	.	-	0	transcript_id "Ledus.S2G237600.t1"; gene_id "Ledus.S2G237600"
Ledus.S2	AUGUSTUS	CDS	18472981	18473630	1	-	2	transcript_id "Ledus.S2G237600.t1"; gene_id "Ledus.S2G237600"
Ledus.S2	AUGUSTUS	exon	18472981	18473630	.	-	.	transcript_id "Ledus.S2G237600.t1"; gene_id "Ledus.S2G237600"
Ledus.S2	AUGUSTUS	intron	18473631	18473720	.	-	.	transcript_id "Ledus.S2G237600.t1"; gene_id "Ledus.S2G237600"
Ledus.S2	AUGUSTUS	CDS	18473721	18473878	1	-	1	transcript_id "Ledus.S2G237600.t1"; gene_id "Ledus.S2G237600"
Ledus.S2	AUGUSTUS	exon	18473721	18473878	.	-	.	transcript_id "Ledus.S2G237600.t1"; gene_id "Ledus.S2G237600"
Ledus.S2	AUGUSTUS	intron	18473879	18473971	.	-	.	transcript_id "Ledus.S2G237600.t1"; gene_id "Ledus.S2G237600"
Ledus.S2	AUGUSTUS	CDS	18473972	18475182	1	-	0	transcript_id "Ledus.S2G237600.t1"; gene_id "Ledus.S2G237600"
Ledus.S2	AUGUSTUS	exon	18473972	18475182	.	-	.	transcript_id "Ledus.S2G237600.t1"; gene_id "Ledus.S2G237600"
Ledus.S2	AUGUSTUS	start_codon	18475180	18475182	.	-	0	transcript_id "Ledus.S2G237600.t1"; gene_id "Ledus.S2G237600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9046.t1 is derived from g10076.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4153267	4153569	.	-	.	Ledus.S3G052300
Ledus.S3	AUGUSTUS	transcript	4153267	4153569	.	-	.	transcript_id "Ledus.S3G052300.t1"; gene_id "Ledus.S3G052300"
Ledus.S3	AUGUSTUS	stop_codon	4153264	4153266	.	-	0	transcript_id "Ledus.S3G052300.t1"; gene_id "Ledus.S3G052300"
Ledus.S3	AUGUSTUS	CDS	4153267	4153569	0.98	-	0	transcript_id "Ledus.S3G052300.t1"; gene_id "Ledus.S3G052300"
Ledus.S3	AUGUSTUS	exon	4153267	4153569	.	-	.	transcript_id "Ledus.S3G052300.t1"; gene_id "Ledus.S3G052300"
Ledus.S3	AUGUSTUS	start_codon	4153567	4153569	.	-	0	transcript_id "Ledus.S3G052300.t1"; gene_id "Ledus.S3G052300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg74.t1 is derived from g9487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	253711	256179	.	-	.	Ledus.C8G003400
Ledus.C8	AUGUSTUS	transcript	253711	256179	.	-	.	transcript_id "Ledus.C8G003400.t1"; gene_id "Ledus.C8G003400"
Ledus.C8	AUGUSTUS	stop_codon	253708	253710	.	-	0	transcript_id "Ledus.C8G003400.t1"; gene_id "Ledus.C8G003400"
Ledus.C8	AUGUSTUS	CDS	253711	256179	0.75	-	0	transcript_id "Ledus.C8G003400.t1"; gene_id "Ledus.C8G003400"
Ledus.C8	AUGUSTUS	exon	253711	256179	.	-	.	transcript_id "Ledus.C8G003400.t1"; gene_id "Ledus.C8G003400"
Ledus.C8	AUGUSTUS	start_codon	256177	256179	.	-	0	transcript_id "Ledus.C8G003400.t1"; gene_id "Ledus.C8G003400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10422.t1 is derived from g11452.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15055817	15058576	.	+	.	Ledus.S3G189900
Ledus.S3	AUGUSTUS	transcript	15055817	15058576	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	start_codon	15055817	15055819	.	+	0	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	CDS	15055817	15055917	0.98	+	0	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	exon	15055817	15055917	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	intron	15055918	15056108	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	CDS	15056109	15056143	0.98	+	1	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	exon	15056109	15056143	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	intron	15056144	15056250	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	CDS	15056251	15056334	0.98	+	2	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	exon	15056251	15056334	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	intron	15056335	15056544	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	CDS	15056545	15056784	0.98	+	2	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	exon	15056545	15056784	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	intron	15056785	15056881	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	CDS	15056882	15056993	1	+	2	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	exon	15056882	15056993	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	intron	15056994	15057182	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	CDS	15057183	15057357	1	+	1	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	exon	15057183	15057357	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	intron	15057358	15057495	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	CDS	15057496	15057739	0.99	+	0	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	exon	15057496	15057739	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	intron	15057740	15057832	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	CDS	15057833	15058009	0.4	+	2	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	exon	15057833	15058009	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	intron	15058010	15058437	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	CDS	15058438	15058483	0.52	+	2	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	exon	15058438	15058483	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	intron	15058484	15058569	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	CDS	15058570	15058576	0.8	+	1	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	exon	15058570	15058576	.	+	.	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
Ledus.S3	AUGUSTUS	stop_codon	15058577	15058579	.	+	0	transcript_id "Ledus.S3G189900.t1"; gene_id "Ledus.S3G189900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11244.t1 is derived from g4862.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2884090	2886872	.	+	.	Ledus.S4G040000
Ledus.S4	AUGUSTUS	transcript	2884090	2886872	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	start_codon	2884090	2884092	.	+	0	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2884090	2884887	0.52	+	0	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2884090	2884887	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2884888	2885035	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2885036	2885095	1	+	0	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2885036	2885095	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2885096	2885269	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2885270	2885410	1	+	0	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2885270	2885410	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2885411	2885553	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2885554	2885643	1	+	0	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2885554	2885643	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2885644	2885818	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2885819	2885851	1	+	0	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2885819	2885851	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2885852	2885934	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2885935	2886036	1	+	0	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2885935	2886036	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2886037	2886122	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2886123	2886179	1	+	0	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2886123	2886179	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2886180	2886317	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2886318	2886380	1	+	0	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2886318	2886380	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2886381	2886520	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2886521	2886588	0.85	+	0	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2886521	2886588	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2886589	2886694	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2886695	2886872	0.89	+	1	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2886695	2886872	.	+	.	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	stop_codon	2886873	2886875	.	+	0	transcript_id "Ledus.S4G040000.t1"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	transcript	2884090	2886872	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	start_codon	2884090	2884092	.	+	0	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2884090	2884887	0.48	+	0	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2884090	2884887	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2884888	2885151	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2885152	2885200	0.6	+	0	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2885152	2885200	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2885201	2885303	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2885304	2885410	0.54	+	2	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2885304	2885410	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2885411	2885553	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2885554	2885643	1	+	0	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2885554	2885643	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2885644	2885818	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2885819	2885851	1	+	0	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2885819	2885851	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2885852	2885934	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2885935	2886036	1	+	0	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2885935	2886036	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2886037	2886122	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2886123	2886179	1	+	0	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2886123	2886179	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2886180	2886317	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2886318	2886380	1	+	0	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2886318	2886380	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2886381	2886520	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2886521	2886588	0.91	+	0	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2886521	2886588	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	intron	2886589	2886694	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	CDS	2886695	2886872	0.96	+	1	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	exon	2886695	2886872	.	+	.	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
Ledus.S4	AUGUSTUS	stop_codon	2886873	2886875	.	+	0	transcript_id "Ledus.S4G040000.t2"; gene_id "Ledus.S4G040000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6558.t1 is derived from g4001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32378059	32379507	.	-	.	Ledus.S1G397900
Ledus.S1	AUGUSTUS	transcript	32378059	32379507	.	-	.	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	stop_codon	32378056	32378058	.	-	0	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	CDS	32378059	32378111	0.6	-	2	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	exon	32378059	32378111	.	-	.	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	intron	32378112	32378250	.	-	.	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	CDS	32378251	32378310	0.54	-	2	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	exon	32378251	32378310	.	-	.	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	intron	32378311	32378485	.	-	.	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	CDS	32378486	32378558	0.52	-	0	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	exon	32378486	32378558	.	-	.	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	intron	32378559	32378719	.	-	.	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	CDS	32378720	32378774	0.51	-	1	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	exon	32378720	32378774	.	-	.	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	intron	32378775	32378990	.	-	.	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	CDS	32378991	32379071	0.38	-	1	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	exon	32378991	32379071	.	-	.	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	intron	32379072	32379148	.	-	.	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	CDS	32379149	32379507	0.54	-	0	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	exon	32379149	32379507	.	-	.	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
Ledus.S1	AUGUSTUS	start_codon	32379505	32379507	.	-	0	transcript_id "Ledus.S1G397900.t1"; gene_id "Ledus.S1G397900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg986.t1 is derived from g7847.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6508821	6514772	.	+	.	Ledus.S2G086800
Ledus.S2	AUGUSTUS	transcript	6508821	6514772	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	start_codon	6508821	6508823	.	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6508821	6508937	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6508821	6508937	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6508938	6509018	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6509019	6509076	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6509019	6509076	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6509077	6509168	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6509169	6509371	1	+	2	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6509169	6509371	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6509372	6509456	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6509457	6509573	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6509457	6509573	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6509574	6509654	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6509655	6509715	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6509655	6509715	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6509716	6509782	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6509783	6509892	1	+	2	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6509783	6509892	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6509893	6509980	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6509981	6510055	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6509981	6510055	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6510056	6510149	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6510150	6510235	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6510150	6510235	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6510236	6510320	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6510321	6510370	1	+	1	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6510321	6510370	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6510371	6510451	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6510452	6510492	1	+	2	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6510452	6510492	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6510493	6510585	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6510586	6510819	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6510586	6510819	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6510820	6510907	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6510908	6510943	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6510908	6510943	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6510944	6511051	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6511052	6511119	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6511052	6511119	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6511120	6511232	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6511233	6511293	1	+	1	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6511233	6511293	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6511294	6511367	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6511368	6511642	0.78	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6511368	6511642	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6511643	6511901	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6511902	6512052	0.74	+	1	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6511902	6512052	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6512053	6512159	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6512160	6512217	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6512160	6512217	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6512218	6512327	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6512328	6512539	1	+	2	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6512328	6512539	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6512540	6512628	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6512629	6512742	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6512629	6512742	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6512743	6512822	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6512823	6512883	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6512823	6512883	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6512884	6512961	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6512962	6513056	1	+	2	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6512962	6513056	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6513057	6513132	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6513133	6513207	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6513133	6513207	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6513208	6513304	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6513305	6513390	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6513305	6513390	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6513391	6513475	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6513476	6513525	1	+	1	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6513476	6513525	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6513526	6513645	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6513646	6513686	1	+	2	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6513646	6513686	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6513687	6513771	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6513772	6513948	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6513772	6513948	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6513949	6514038	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6514039	6514074	0.95	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6514039	6514074	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6514075	6514181	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6514182	6514249	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6514182	6514249	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6514250	6514410	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6514411	6514471	1	+	1	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6514411	6514471	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	intron	6514472	6514589	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	CDS	6514590	6514772	1	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	exon	6514590	6514772	.	+	.	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
Ledus.S2	AUGUSTUS	stop_codon	6514773	6514775	.	+	0	transcript_id "Ledus.S2G086800.t1"; gene_id "Ledus.S2G086800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5799.t1 is derived from g3241.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26975689	26976497	.	+	.	Ledus.S1G322000
Ledus.S1	AUGUSTUS	transcript	26975689	26976497	.	+	.	transcript_id "Ledus.S1G322000.t1"; gene_id "Ledus.S1G322000"
Ledus.S1	AUGUSTUS	start_codon	26975689	26975691	.	+	0	transcript_id "Ledus.S1G322000.t1"; gene_id "Ledus.S1G322000"
Ledus.S1	AUGUSTUS	CDS	26975689	26975939	0.59	+	0	transcript_id "Ledus.S1G322000.t1"; gene_id "Ledus.S1G322000"
Ledus.S1	AUGUSTUS	exon	26975689	26975939	.	+	.	transcript_id "Ledus.S1G322000.t1"; gene_id "Ledus.S1G322000"
Ledus.S1	AUGUSTUS	intron	26975940	26976066	.	+	.	transcript_id "Ledus.S1G322000.t1"; gene_id "Ledus.S1G322000"
Ledus.S1	AUGUSTUS	CDS	26976067	26976388	0.78	+	1	transcript_id "Ledus.S1G322000.t1"; gene_id "Ledus.S1G322000"
Ledus.S1	AUGUSTUS	exon	26976067	26976388	.	+	.	transcript_id "Ledus.S1G322000.t1"; gene_id "Ledus.S1G322000"
Ledus.S1	AUGUSTUS	intron	26976389	26976482	.	+	.	transcript_id "Ledus.S1G322000.t1"; gene_id "Ledus.S1G322000"
Ledus.S1	AUGUSTUS	CDS	26976483	26976497	0.78	+	0	transcript_id "Ledus.S1G322000.t1"; gene_id "Ledus.S1G322000"
Ledus.S1	AUGUSTUS	exon	26976483	26976497	.	+	.	transcript_id "Ledus.S1G322000.t1"; gene_id "Ledus.S1G322000"
Ledus.S1	AUGUSTUS	stop_codon	26976498	26976500	.	+	0	transcript_id "Ledus.S1G322000.t1"; gene_id "Ledus.S1G322000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12936.t1 is derived from g4428.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	425472	427498	.	-	.	Ledus.C9G004400
Ledus.C9	AUGUSTUS	transcript	425472	427498	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	stop_codon	425469	425471	.	-	0	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	CDS	425472	425614	1	-	2	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	exon	425472	425614	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	intron	425615	425715	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	CDS	425716	425763	1	-	2	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	exon	425716	425763	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	intron	425764	425850	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	CDS	425851	425948	1	-	1	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	exon	425851	425948	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	intron	425949	426027	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	CDS	426028	426107	1	-	0	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	exon	426028	426107	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	intron	426108	426230	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	CDS	426231	426302	1	-	0	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	exon	426231	426302	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	intron	426303	426483	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	CDS	426484	426525	1	-	0	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	exon	426484	426525	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	intron	426526	426621	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	CDS	426622	426783	1	-	0	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	exon	426622	426783	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	intron	426784	426877	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	CDS	426878	427115	1	-	1	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	exon	426878	427115	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	intron	427116	427203	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	CDS	427204	427294	1	-	2	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	exon	427204	427294	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	intron	427295	427380	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	CDS	427381	427498	0.95	-	0	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	exon	427381	427498	.	-	.	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
Ledus.C9	AUGUSTUS	start_codon	427496	427498	.	-	0	transcript_id "Ledus.C9G004400.t1"; gene_id "Ledus.C9G004400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3569.t1 is derived from g1005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9640559	9641023	.	-	.	Ledus.S1G099000
Ledus.S1	AUGUSTUS	transcript	9640559	9641023	.	-	.	transcript_id "Ledus.S1G099000.t1"; gene_id "Ledus.S1G099000"
Ledus.S1	AUGUSTUS	stop_codon	9640556	9640558	.	-	0	transcript_id "Ledus.S1G099000.t1"; gene_id "Ledus.S1G099000"
Ledus.S1	AUGUSTUS	CDS	9640559	9641023	0.57	-	0	transcript_id "Ledus.S1G099000.t1"; gene_id "Ledus.S1G099000"
Ledus.S1	AUGUSTUS	exon	9640559	9641023	.	-	.	transcript_id "Ledus.S1G099000.t1"; gene_id "Ledus.S1G099000"
Ledus.S1	AUGUSTUS	start_codon	9641021	9641023	.	-	0	transcript_id "Ledus.S1G099000.t1"; gene_id "Ledus.S1G099000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12283.t1 is derived from g5903.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10846868	10847446	.	+	.	Ledus.S4G143900
Ledus.S4	AUGUSTUS	transcript	10846868	10847446	.	+	.	transcript_id "Ledus.S4G143900.t1"; gene_id "Ledus.S4G143900"
Ledus.S4	AUGUSTUS	start_codon	10846868	10846870	.	+	0	transcript_id "Ledus.S4G143900.t1"; gene_id "Ledus.S4G143900"
Ledus.S4	AUGUSTUS	CDS	10846868	10847446	1	+	0	transcript_id "Ledus.S4G143900.t1"; gene_id "Ledus.S4G143900"
Ledus.S4	AUGUSTUS	exon	10846868	10847446	.	+	.	transcript_id "Ledus.S4G143900.t1"; gene_id "Ledus.S4G143900"
Ledus.S4	AUGUSTUS	stop_codon	10847447	10847449	.	+	0	transcript_id "Ledus.S4G143900.t1"; gene_id "Ledus.S4G143900"
# This transcript jg6753.t2 is derived from g4196.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6754.t1 is derived from g4197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33773825	33777025	.	+	.	Ledus.S1G417500
Ledus.S1	AUGUSTUS	transcript	33773825	33777025	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	start_codon	33773825	33773827	.	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33773825	33774027	0.93	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33773825	33774027	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33774028	33774115	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33774116	33774275	1	+	1	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33774116	33774275	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33774276	33774358	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33774359	33774439	1	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33774359	33774439	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33774440	33774533	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33774534	33774592	1	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33774534	33774592	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33774593	33774729	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33774730	33774804	1	+	1	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33774730	33774804	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33774805	33774888	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33774889	33774982	1	+	1	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33774889	33774982	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33774983	33775063	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33775064	33775143	1	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33775064	33775143	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33775144	33775240	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33775241	33775334	1	+	1	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33775241	33775334	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33775335	33775421	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33775422	33775541	1	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33775422	33775541	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33775542	33775676	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33775677	33775790	1	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33775677	33775790	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33775791	33775880	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33775881	33776060	1	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33775881	33776060	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33776061	33776144	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33776145	33776224	1	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33776145	33776224	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33776225	33776337	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33776338	33776485	1	+	1	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33776338	33776485	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33776486	33776569	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33776570	33776650	0.98	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33776570	33776650	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33776651	33776758	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33776759	33776881	0.99	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33776759	33776881	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	intron	33776882	33776968	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	CDS	33776969	33777025	1	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	exon	33776969	33777025	.	+	.	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
Ledus.S1	AUGUSTUS	stop_codon	33777026	33777028	.	+	0	transcript_id "Ledus.S1G417500.t1"; gene_id "Ledus.S1G417500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2913.t1 is derived from g348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4546318	4546716	.	-	.	Ledus.S1G033400
Ledus.S1	AUGUSTUS	transcript	4546318	4546716	.	-	.	transcript_id "Ledus.S1G033400.t1"; gene_id "Ledus.S1G033400"
Ledus.S1	AUGUSTUS	stop_codon	4546315	4546317	.	-	0	transcript_id "Ledus.S1G033400.t1"; gene_id "Ledus.S1G033400"
Ledus.S1	AUGUSTUS	CDS	4546318	4546716	0.58	-	0	transcript_id "Ledus.S1G033400.t1"; gene_id "Ledus.S1G033400"
Ledus.S1	AUGUSTUS	exon	4546318	4546716	.	-	.	transcript_id "Ledus.S1G033400.t1"; gene_id "Ledus.S1G033400"
Ledus.S1	AUGUSTUS	start_codon	4546714	4546716	.	-	0	transcript_id "Ledus.S1G033400.t1"; gene_id "Ledus.S1G033400"
# This transcript jg2583.t2 is derived from g16.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2584.t1 is derived from g17.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	151155	151520	.	-	.	Ledus.S1G000500
Ledus.S1	AUGUSTUS	transcript	151155	151520	.	-	.	transcript_id "Ledus.S1G000500.t1"; gene_id "Ledus.S1G000500"
Ledus.S1	AUGUSTUS	stop_codon	151152	151154	.	-	0	transcript_id "Ledus.S1G000500.t1"; gene_id "Ledus.S1G000500"
Ledus.S1	AUGUSTUS	CDS	151155	151520	0.41	-	0	transcript_id "Ledus.S1G000500.t1"; gene_id "Ledus.S1G000500"
Ledus.S1	AUGUSTUS	exon	151155	151520	.	-	.	transcript_id "Ledus.S1G000500.t1"; gene_id "Ledus.S1G000500"
Ledus.S1	AUGUSTUS	start_codon	151518	151520	.	-	0	transcript_id "Ledus.S1G000500.t1"; gene_id "Ledus.S1G000500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9628.t1 is derived from g10658.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8459049	8460177	.	-	.	Ledus.S3G110500
Ledus.S3	AUGUSTUS	transcript	8459049	8460177	.	-	.	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	stop_codon	8459046	8459048	.	-	0	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	CDS	8459049	8459108	0.91	-	0	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	exon	8459049	8459108	.	-	.	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	intron	8459109	8459199	.	-	.	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	CDS	8459200	8459388	1	-	0	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	exon	8459200	8459388	.	-	.	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	intron	8459389	8459469	.	-	.	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	CDS	8459470	8459600	0.88	-	2	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	exon	8459470	8459600	.	-	.	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	intron	8459601	8459684	.	-	.	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	CDS	8459685	8460177	0.88	-	0	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	exon	8459685	8460177	.	-	.	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
Ledus.S3	AUGUSTUS	start_codon	8460175	8460177	.	-	0	transcript_id "Ledus.S3G110500.t1"; gene_id "Ledus.S3G110500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1954.t1 is derived from g8817.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13706708	13707660	.	-	.	Ledus.S2G183600
Ledus.S2	AUGUSTUS	transcript	13706708	13707660	.	-	.	transcript_id "Ledus.S2G183600.t1"; gene_id "Ledus.S2G183600"
Ledus.S2	AUGUSTUS	stop_codon	13706705	13706707	.	-	0	transcript_id "Ledus.S2G183600.t1"; gene_id "Ledus.S2G183600"
Ledus.S2	AUGUSTUS	CDS	13706708	13707477	1	-	2	transcript_id "Ledus.S2G183600.t1"; gene_id "Ledus.S2G183600"
Ledus.S2	AUGUSTUS	exon	13706708	13707477	.	-	.	transcript_id "Ledus.S2G183600.t1"; gene_id "Ledus.S2G183600"
Ledus.S2	AUGUSTUS	intron	13707478	13707587	.	-	.	transcript_id "Ledus.S2G183600.t1"; gene_id "Ledus.S2G183600"
Ledus.S2	AUGUSTUS	CDS	13707588	13707660	0.8	-	0	transcript_id "Ledus.S2G183600.t1"; gene_id "Ledus.S2G183600"
Ledus.S2	AUGUSTUS	exon	13707588	13707660	.	-	.	transcript_id "Ledus.S2G183600.t1"; gene_id "Ledus.S2G183600"
Ledus.S2	AUGUSTUS	start_codon	13707658	13707660	.	-	0	transcript_id "Ledus.S2G183600.t1"; gene_id "Ledus.S2G183600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4999.t1 is derived from g2437.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21079367	21081901	.	+	.	Ledus.S1G242000
Ledus.S1	AUGUSTUS	transcript	21079367	21081901	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	start_codon	21079367	21079369	.	+	0	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	CDS	21079367	21079651	0.72	+	0	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	exon	21079367	21079651	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	intron	21079652	21079734	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	CDS	21079735	21080154	0.99	+	0	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	exon	21079735	21080154	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	intron	21080155	21080251	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	CDS	21080252	21080587	1	+	0	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	exon	21080252	21080587	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	intron	21080588	21080669	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	CDS	21080670	21080756	1	+	0	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	exon	21080670	21080756	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	intron	21080757	21080835	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	CDS	21080836	21081018	1	+	0	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	exon	21080836	21081018	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	intron	21081019	21081091	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	CDS	21081092	21081555	1	+	0	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	exon	21081092	21081555	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	intron	21081556	21081651	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	CDS	21081652	21081901	1	+	1	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	exon	21081652	21081901	.	+	.	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
Ledus.S1	AUGUSTUS	stop_codon	21081902	21081904	.	+	0	transcript_id "Ledus.S1G242000.t1"; gene_id "Ledus.S1G242000"
# This transcript jg12082.t2 is derived from g5701.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12083.t1 is derived from g5702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9438518	9440956	.	+	.	Ledus.S4G123900
Ledus.S4	AUGUSTUS	transcript	9438518	9440956	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	start_codon	9438518	9438520	.	+	0	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9438518	9438617	0.69	+	0	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9438518	9438617	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9438618	9438761	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9438762	9438895	1	+	2	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9438762	9438895	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9438896	9439030	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9439031	9439107	1	+	0	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9439031	9439107	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9439108	9439241	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9439242	9439289	1	+	1	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9439242	9439289	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9439290	9439419	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9439420	9439471	1	+	1	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9439420	9439471	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9439472	9439563	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9439564	9439629	1	+	0	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9439564	9439629	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9439630	9439868	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9439869	9439961	1	+	0	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9439869	9439961	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9439962	9440093	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9440094	9440150	1	+	0	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9440094	9440150	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9440151	9440233	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9440234	9440296	1	+	0	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9440234	9440296	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9440297	9440421	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9440422	9440490	1	+	0	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9440422	9440490	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9440491	9440568	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9440569	9440641	1	+	0	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9440569	9440641	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9440642	9440729	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9440730	9440821	1	+	2	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9440730	9440821	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9440822	9440902	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9440903	9440956	1	+	0	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9440903	9440956	.	+	.	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	stop_codon	9440957	9440959	.	+	0	transcript_id "Ledus.S4G123900.t1"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	transcript	9438518	9440956	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	start_codon	9438518	9438520	.	+	0	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9438518	9438617	0.6	+	0	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9438518	9438617	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9438618	9438767	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9438768	9438895	0.99	+	2	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9438768	9438895	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9438896	9439030	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9439031	9439107	1	+	0	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9439031	9439107	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9439108	9439241	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9439242	9439289	1	+	1	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9439242	9439289	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9439290	9439419	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9439420	9439471	1	+	1	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9439420	9439471	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9439472	9439563	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9439564	9439629	1	+	0	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9439564	9439629	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9439630	9439868	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9439869	9439961	1	+	0	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9439869	9439961	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9439962	9440093	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9440094	9440150	1	+	0	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9440094	9440150	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9440151	9440233	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9440234	9440296	1	+	0	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9440234	9440296	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9440297	9440421	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9440422	9440490	1	+	0	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9440422	9440490	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9440491	9440568	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9440569	9440641	1	+	0	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9440569	9440641	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9440642	9440729	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9440730	9440821	1	+	2	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9440730	9440821	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	intron	9440822	9440902	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	CDS	9440903	9440956	1	+	0	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	exon	9440903	9440956	.	+	.	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
Ledus.S4	AUGUSTUS	stop_codon	9440957	9440959	.	+	0	transcript_id "Ledus.S4G123900.t2"; gene_id "Ledus.S4G123900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5759.t1 is derived from g3200.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26532662	26533955	.	+	.	Ledus.S1G318000
Ledus.S1	AUGUSTUS	transcript	26532662	26533955	.	+	.	transcript_id "Ledus.S1G318000.t1"; gene_id "Ledus.S1G318000"
Ledus.S1	AUGUSTUS	start_codon	26532662	26532664	.	+	0	transcript_id "Ledus.S1G318000.t1"; gene_id "Ledus.S1G318000"
Ledus.S1	AUGUSTUS	CDS	26532662	26533594	0.41	+	0	transcript_id "Ledus.S1G318000.t1"; gene_id "Ledus.S1G318000"
Ledus.S1	AUGUSTUS	exon	26532662	26533594	.	+	.	transcript_id "Ledus.S1G318000.t1"; gene_id "Ledus.S1G318000"
Ledus.S1	AUGUSTUS	intron	26533595	26533738	.	+	.	transcript_id "Ledus.S1G318000.t1"; gene_id "Ledus.S1G318000"
Ledus.S1	AUGUSTUS	CDS	26533739	26533779	0.87	+	0	transcript_id "Ledus.S1G318000.t1"; gene_id "Ledus.S1G318000"
Ledus.S1	AUGUSTUS	exon	26533739	26533779	.	+	.	transcript_id "Ledus.S1G318000.t1"; gene_id "Ledus.S1G318000"
Ledus.S1	AUGUSTUS	intron	26533780	26533861	.	+	.	transcript_id "Ledus.S1G318000.t1"; gene_id "Ledus.S1G318000"
Ledus.S1	AUGUSTUS	CDS	26533862	26533955	0.98	+	1	transcript_id "Ledus.S1G318000.t1"; gene_id "Ledus.S1G318000"
Ledus.S1	AUGUSTUS	exon	26533862	26533955	.	+	.	transcript_id "Ledus.S1G318000.t1"; gene_id "Ledus.S1G318000"
Ledus.S1	AUGUSTUS	stop_codon	26533956	26533958	.	+	0	transcript_id "Ledus.S1G318000.t1"; gene_id "Ledus.S1G318000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4141.t1 is derived from g1577.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14921242	14929171	.	+	.	Ledus.S1G156200
Ledus.S1	AUGUSTUS	transcript	14921242	14929171	.	+	.	transcript_id "Ledus.S1G156200.t1"; gene_id "Ledus.S1G156200"
Ledus.S1	AUGUSTUS	start_codon	14921242	14921244	.	+	0	transcript_id "Ledus.S1G156200.t1"; gene_id "Ledus.S1G156200"
Ledus.S1	AUGUSTUS	CDS	14921242	14928584	0.95	+	0	transcript_id "Ledus.S1G156200.t1"; gene_id "Ledus.S1G156200"
Ledus.S1	AUGUSTUS	exon	14921242	14928584	.	+	.	transcript_id "Ledus.S1G156200.t1"; gene_id "Ledus.S1G156200"
Ledus.S1	AUGUSTUS	intron	14928585	14928697	.	+	.	transcript_id "Ledus.S1G156200.t1"; gene_id "Ledus.S1G156200"
Ledus.S1	AUGUSTUS	CDS	14928698	14928739	1	+	1	transcript_id "Ledus.S1G156200.t1"; gene_id "Ledus.S1G156200"
Ledus.S1	AUGUSTUS	exon	14928698	14928739	.	+	.	transcript_id "Ledus.S1G156200.t1"; gene_id "Ledus.S1G156200"
Ledus.S1	AUGUSTUS	intron	14928740	14928870	.	+	.	transcript_id "Ledus.S1G156200.t1"; gene_id "Ledus.S1G156200"
Ledus.S1	AUGUSTUS	CDS	14928871	14929171	0.99	+	1	transcript_id "Ledus.S1G156200.t1"; gene_id "Ledus.S1G156200"
Ledus.S1	AUGUSTUS	exon	14928871	14929171	.	+	.	transcript_id "Ledus.S1G156200.t1"; gene_id "Ledus.S1G156200"
Ledus.S1	AUGUSTUS	stop_codon	14929172	14929174	.	+	0	transcript_id "Ledus.S1G156200.t1"; gene_id "Ledus.S1G156200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg728.t1 is derived from g7589.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4536569	4536775	.	-	.	Ledus.S2G061000
Ledus.S2	AUGUSTUS	transcript	4536569	4536775	.	-	.	transcript_id "Ledus.S2G061000.t1"; gene_id "Ledus.S2G061000"
Ledus.S2	AUGUSTUS	stop_codon	4536566	4536568	.	-	0	transcript_id "Ledus.S2G061000.t1"; gene_id "Ledus.S2G061000"
Ledus.S2	AUGUSTUS	CDS	4536569	4536775	0.74	-	0	transcript_id "Ledus.S2G061000.t1"; gene_id "Ledus.S2G061000"
Ledus.S2	AUGUSTUS	exon	4536569	4536775	.	-	.	transcript_id "Ledus.S2G061000.t1"; gene_id "Ledus.S2G061000"
Ledus.S2	AUGUSTUS	start_codon	4536773	4536775	.	-	0	transcript_id "Ledus.S2G061000.t1"; gene_id "Ledus.S2G061000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10387.t1 is derived from g11417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14691461	14692039	.	+	.	Ledus.S3G186400
Ledus.S3	AUGUSTUS	transcript	14691461	14692039	.	+	.	transcript_id "Ledus.S3G186400.t1"; gene_id "Ledus.S3G186400"
Ledus.S3	AUGUSTUS	start_codon	14691461	14691463	.	+	0	transcript_id "Ledus.S3G186400.t1"; gene_id "Ledus.S3G186400"
Ledus.S3	AUGUSTUS	CDS	14691461	14691605	1	+	0	transcript_id "Ledus.S3G186400.t1"; gene_id "Ledus.S3G186400"
Ledus.S3	AUGUSTUS	exon	14691461	14691605	.	+	.	transcript_id "Ledus.S3G186400.t1"; gene_id "Ledus.S3G186400"
Ledus.S3	AUGUSTUS	intron	14691606	14691701	.	+	.	transcript_id "Ledus.S3G186400.t1"; gene_id "Ledus.S3G186400"
Ledus.S3	AUGUSTUS	CDS	14691702	14692039	0.66	+	2	transcript_id "Ledus.S3G186400.t1"; gene_id "Ledus.S3G186400"
Ledus.S3	AUGUSTUS	exon	14691702	14692039	.	+	.	transcript_id "Ledus.S3G186400.t1"; gene_id "Ledus.S3G186400"
Ledus.S3	AUGUSTUS	stop_codon	14692040	14692042	.	+	0	transcript_id "Ledus.S3G186400.t1"; gene_id "Ledus.S3G186400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8697.t1 is derived from g9727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1442642	1443204	.	+	.	Ledus.S3G017400
Ledus.S3	AUGUSTUS	transcript	1442642	1443204	.	+	.	transcript_id "Ledus.S3G017400.t1"; gene_id "Ledus.S3G017400"
Ledus.S3	AUGUSTUS	start_codon	1442642	1442644	.	+	0	transcript_id "Ledus.S3G017400.t1"; gene_id "Ledus.S3G017400"
Ledus.S3	AUGUSTUS	CDS	1442642	1442694	0.66	+	0	transcript_id "Ledus.S3G017400.t1"; gene_id "Ledus.S3G017400"
Ledus.S3	AUGUSTUS	exon	1442642	1442694	.	+	.	transcript_id "Ledus.S3G017400.t1"; gene_id "Ledus.S3G017400"
Ledus.S3	AUGUSTUS	intron	1442695	1442851	.	+	.	transcript_id "Ledus.S3G017400.t1"; gene_id "Ledus.S3G017400"
Ledus.S3	AUGUSTUS	CDS	1442852	1443024	0.52	+	1	transcript_id "Ledus.S3G017400.t1"; gene_id "Ledus.S3G017400"
Ledus.S3	AUGUSTUS	exon	1442852	1443024	.	+	.	transcript_id "Ledus.S3G017400.t1"; gene_id "Ledus.S3G017400"
Ledus.S3	AUGUSTUS	intron	1443025	1443160	.	+	.	transcript_id "Ledus.S3G017400.t1"; gene_id "Ledus.S3G017400"
Ledus.S3	AUGUSTUS	CDS	1443161	1443204	0.59	+	2	transcript_id "Ledus.S3G017400.t1"; gene_id "Ledus.S3G017400"
Ledus.S3	AUGUSTUS	exon	1443161	1443204	.	+	.	transcript_id "Ledus.S3G017400.t1"; gene_id "Ledus.S3G017400"
Ledus.S3	AUGUSTUS	stop_codon	1443205	1443207	.	+	0	transcript_id "Ledus.S3G017400.t1"; gene_id "Ledus.S3G017400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg4668.t1 is derived from g2106.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18907316	18909746	.	+	.	Ledus.S1G208900
Ledus.S1	AUGUSTUS	transcript	18907316	18909746	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	start_codon	18907316	18907318	.	+	0	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18907316	18907453	0.53	+	0	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18907316	18907453	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18907454	18907553	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18907554	18907688	0.42	+	0	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18907554	18907688	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18907689	18908062	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18908063	18908185	0.35	+	0	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18908063	18908185	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18908186	18908360	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18908361	18908498	0.99	+	0	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18908361	18908498	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18908499	18908642	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18908643	18908807	1	+	0	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18908643	18908807	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18908808	18909416	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18909417	18909638	0.62	+	0	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18909417	18909638	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18909639	18909716	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18909717	18909746	0.65	+	0	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18909717	18909746	.	+	.	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	stop_codon	18909747	18909749	.	+	0	transcript_id "Ledus.S1G208900.t1"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	transcript	18908032	18909746	.	+	.	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	start_codon	18908032	18908034	.	+	0	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18908032	18908052	0.38	+	0	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18908032	18908052	.	+	.	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18908053	18908360	.	+	.	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18908361	18908498	0.93	+	0	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18908361	18908498	.	+	.	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18908499	18908642	.	+	.	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18908643	18908807	1	+	0	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18908643	18908807	.	+	.	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18908808	18909416	.	+	.	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18909417	18909638	0.55	+	0	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18909417	18909638	.	+	.	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18909639	18909716	.	+	.	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18909717	18909746	0.58	+	0	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18909717	18909746	.	+	.	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	stop_codon	18909747	18909749	.	+	0	transcript_id "Ledus.S1G208900.t2"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	transcript	18907316	18909746	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	start_codon	18907316	18907318	.	+	0	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18907316	18907453	0.44	+	0	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18907316	18907453	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18907454	18907553	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18907554	18907688	0.36	+	0	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18907554	18907688	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18907689	18907854	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18907855	18907925	0.23	+	0	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18907855	18907925	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18907926	18908116	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18908117	18908185	0.69	+	1	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18908117	18908185	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18908186	18908360	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18908361	18908484	0.78	+	1	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18908361	18908484	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18908485	18908642	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18908643	18908807	0.94	+	0	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18908643	18908807	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18908808	18909416	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18909417	18909638	0.57	+	0	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18909417	18909638	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	intron	18909639	18909716	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	CDS	18909717	18909746	0.57	+	0	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	exon	18909717	18909746	.	+	.	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
Ledus.S1	AUGUSTUS	stop_codon	18909747	18909749	.	+	0	transcript_id "Ledus.S1G208900.t3"; gene_id "Ledus.S1G208900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6622.t1 is derived from g4065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32760381	32762526	.	+	.	Ledus.S1G404300
Ledus.S1	AUGUSTUS	transcript	32760381	32762526	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	start_codon	32760381	32760383	.	+	0	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	CDS	32760381	32760476	0.63	+	0	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	exon	32760381	32760476	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	intron	32760477	32760574	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	CDS	32760575	32760770	0.99	+	0	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	exon	32760575	32760770	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	intron	32760771	32760909	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	CDS	32760910	32761171	0.53	+	2	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	exon	32760910	32761171	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	intron	32761172	32761377	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	CDS	32761378	32761499	1	+	1	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	exon	32761378	32761499	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	intron	32761500	32761601	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	CDS	32761602	32761702	0.99	+	2	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	exon	32761602	32761702	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	intron	32761703	32761793	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	CDS	32761794	32761852	1	+	0	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	exon	32761794	32761852	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	intron	32761853	32762004	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	CDS	32762005	32762061	1	+	1	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	exon	32762005	32762061	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	intron	32762062	32762143	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	CDS	32762144	32762189	1	+	1	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	exon	32762144	32762189	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	intron	32762190	32762283	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	CDS	32762284	32762363	1	+	0	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	exon	32762284	32762363	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	intron	32762364	32762459	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	CDS	32762460	32762526	1	+	1	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	exon	32762460	32762526	.	+	.	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
Ledus.S1	AUGUSTUS	stop_codon	32762527	32762529	.	+	0	transcript_id "Ledus.S1G404300.t1"; gene_id "Ledus.S1G404300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2447.t1 is derived from g9310.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18140016	18141120	.	+	.	Ledus.S2G232900
Ledus.S2	AUGUSTUS	transcript	18140016	18141120	.	+	.	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	start_codon	18140016	18140018	.	+	0	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	CDS	18140016	18140237	1	+	0	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	exon	18140016	18140237	.	+	.	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	intron	18140238	18140354	.	+	.	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	CDS	18140355	18140434	1	+	0	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	exon	18140355	18140434	.	+	.	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	intron	18140435	18140534	.	+	.	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	CDS	18140535	18140585	0.55	+	1	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	exon	18140535	18140585	.	+	.	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	intron	18140586	18140804	.	+	.	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	CDS	18140805	18141120	0.98	+	1	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	exon	18140805	18141120	.	+	.	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
Ledus.S2	AUGUSTUS	stop_codon	18141121	18141123	.	+	0	transcript_id "Ledus.S2G232900.t1"; gene_id "Ledus.S2G232900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10652.t1 is derived from g11682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16871327	16873935	.	-	.	Ledus.S3G212900
Ledus.S3	AUGUSTUS	transcript	16871327	16873935	.	-	.	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	stop_codon	16871324	16871326	.	-	0	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	CDS	16871327	16871836	0.99	-	0	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	exon	16871327	16871836	.	-	.	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	intron	16871837	16871932	.	-	.	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	CDS	16871933	16872019	1	-	0	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	exon	16871933	16872019	.	-	.	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	intron	16872020	16872122	.	-	.	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	CDS	16872123	16872320	1	-	0	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	exon	16872123	16872320	.	-	.	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	intron	16872321	16872606	.	-	.	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	CDS	16872607	16872808	1	-	1	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	exon	16872607	16872808	.	-	.	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	intron	16872809	16872979	.	-	.	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	CDS	16872980	16873935	0.99	-	0	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	exon	16872980	16873935	.	-	.	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
Ledus.S3	AUGUSTUS	start_codon	16873933	16873935	.	-	0	transcript_id "Ledus.S3G212900.t1"; gene_id "Ledus.S3G212900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2409.t1 is derived from g9272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17978099	17979094	.	+	.	Ledus.S2G229100
Ledus.S2	AUGUSTUS	transcript	17978099	17979094	.	+	.	transcript_id "Ledus.S2G229100.t1"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	start_codon	17978099	17978101	.	+	0	transcript_id "Ledus.S2G229100.t1"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	CDS	17978099	17978209	1	+	0	transcript_id "Ledus.S2G229100.t1"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	exon	17978099	17978209	.	+	.	transcript_id "Ledus.S2G229100.t1"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	intron	17978210	17978623	.	+	.	transcript_id "Ledus.S2G229100.t1"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	CDS	17978624	17978734	1	+	0	transcript_id "Ledus.S2G229100.t1"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	exon	17978624	17978734	.	+	.	transcript_id "Ledus.S2G229100.t1"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	intron	17978735	17978857	.	+	.	transcript_id "Ledus.S2G229100.t1"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	CDS	17978858	17979094	1	+	0	transcript_id "Ledus.S2G229100.t1"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	exon	17978858	17979094	.	+	.	transcript_id "Ledus.S2G229100.t1"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	stop_codon	17979095	17979097	.	+	0	transcript_id "Ledus.S2G229100.t1"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	transcript	17978099	17979094	.	+	.	transcript_id "Ledus.S2G229100.t2"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	start_codon	17978099	17978101	.	+	0	transcript_id "Ledus.S2G229100.t2"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	CDS	17978099	17978269	0.98	+	0	transcript_id "Ledus.S2G229100.t2"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	exon	17978099	17978269	.	+	.	transcript_id "Ledus.S2G229100.t2"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	intron	17978270	17978623	.	+	.	transcript_id "Ledus.S2G229100.t2"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	CDS	17978624	17978734	1	+	0	transcript_id "Ledus.S2G229100.t2"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	exon	17978624	17978734	.	+	.	transcript_id "Ledus.S2G229100.t2"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	intron	17978735	17978857	.	+	.	transcript_id "Ledus.S2G229100.t2"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	CDS	17978858	17979094	1	+	0	transcript_id "Ledus.S2G229100.t2"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	exon	17978858	17979094	.	+	.	transcript_id "Ledus.S2G229100.t2"; gene_id "Ledus.S2G229100"
Ledus.S2	AUGUSTUS	stop_codon	17979095	17979097	.	+	0	transcript_id "Ledus.S2G229100.t2"; gene_id "Ledus.S2G229100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2202.t1 is derived from g9065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15951222	15953621	.	-	.	Ledus.S2G208400
Ledus.S2	AUGUSTUS	transcript	15951222	15953621	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	stop_codon	15951219	15951221	.	-	0	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	CDS	15951222	15951350	1	-	0	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	exon	15951222	15951350	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	intron	15951351	15951440	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	CDS	15951441	15951680	1	-	0	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	exon	15951441	15951680	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	intron	15951681	15951766	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	CDS	15951767	15951966	1	-	2	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	exon	15951767	15951966	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	intron	15951967	15952075	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	CDS	15952076	15952268	0.75	-	0	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	exon	15952076	15952268	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	intron	15952269	15952383	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	CDS	15952384	15952590	0.94	-	0	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	exon	15952384	15952590	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	intron	15952591	15952703	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	CDS	15952704	15952928	1	-	0	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	exon	15952704	15952928	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	intron	15952929	15953156	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	CDS	15953157	15953621	0.54	-	0	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	exon	15953157	15953621	.	-	.	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
Ledus.S2	AUGUSTUS	start_codon	15953619	15953621	.	-	0	transcript_id "Ledus.S2G208400.t1"; gene_id "Ledus.S2G208400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6686.t1 is derived from g4129.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33228416	33228925	.	+	.	Ledus.S1G410700
Ledus.S1	AUGUSTUS	transcript	33228416	33228925	.	+	.	transcript_id "Ledus.S1G410700.t1"; gene_id "Ledus.S1G410700"
Ledus.S1	AUGUSTUS	start_codon	33228416	33228418	.	+	0	transcript_id "Ledus.S1G410700.t1"; gene_id "Ledus.S1G410700"
Ledus.S1	AUGUSTUS	CDS	33228416	33228925	0.68	+	0	transcript_id "Ledus.S1G410700.t1"; gene_id "Ledus.S1G410700"
Ledus.S1	AUGUSTUS	exon	33228416	33228925	.	+	.	transcript_id "Ledus.S1G410700.t1"; gene_id "Ledus.S1G410700"
Ledus.S1	AUGUSTUS	stop_codon	33228926	33228928	.	+	0	transcript_id "Ledus.S1G410700.t1"; gene_id "Ledus.S1G410700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7549.t1 is derived from g12220.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3882843	3883499	.	-	.	Ledus.S5G032700
Ledus.S5	AUGUSTUS	transcript	3882843	3883499	.	-	.	transcript_id "Ledus.S5G032700.t1"; gene_id "Ledus.S5G032700"
Ledus.S5	AUGUSTUS	stop_codon	3882840	3882842	.	-	0	transcript_id "Ledus.S5G032700.t1"; gene_id "Ledus.S5G032700"
Ledus.S5	AUGUSTUS	CDS	3882843	3883499	0.56	-	0	transcript_id "Ledus.S5G032700.t1"; gene_id "Ledus.S5G032700"
Ledus.S5	AUGUSTUS	exon	3882843	3883499	.	-	.	transcript_id "Ledus.S5G032700.t1"; gene_id "Ledus.S5G032700"
Ledus.S5	AUGUSTUS	start_codon	3883497	3883499	.	-	0	transcript_id "Ledus.S5G032700.t1"; gene_id "Ledus.S5G032700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12333.t1 is derived from g5954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11235724	11237500	.	+	.	Ledus.S4G148900
Ledus.S4	AUGUSTUS	transcript	11235724	11237500	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	start_codon	11235724	11235726	.	+	0	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	CDS	11235724	11235726	0.94	+	0	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	exon	11235724	11235726	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	intron	11235727	11236154	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	CDS	11236155	11236227	1	+	0	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	exon	11236155	11236227	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	intron	11236228	11236322	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	CDS	11236323	11236379	1	+	2	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	exon	11236323	11236379	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	intron	11236380	11236480	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	CDS	11236481	11236598	0.96	+	2	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	exon	11236481	11236598	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	intron	11236599	11236702	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	CDS	11236703	11236792	0.97	+	1	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	exon	11236703	11236792	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	intron	11236793	11236926	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	CDS	11236927	11237106	1	+	1	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	exon	11236927	11237106	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	intron	11237107	11237248	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	CDS	11237249	11237326	1	+	1	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	exon	11237249	11237326	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	intron	11237327	11237430	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	CDS	11237431	11237500	1	+	1	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	exon	11237431	11237500	.	+	.	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
Ledus.S4	AUGUSTUS	stop_codon	11237501	11237503	.	+	0	transcript_id "Ledus.S4G148900.t1"; gene_id "Ledus.S4G148900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg943.t1 is derived from g7804.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6246262	6247344	.	+	.	Ledus.S2G082500
Ledus.S2	AUGUSTUS	transcript	6246262	6247344	.	+	.	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	start_codon	6246262	6246264	.	+	0	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	CDS	6246262	6246282	0.62	+	0	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	exon	6246262	6246282	.	+	.	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	intron	6246283	6246393	.	+	.	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	CDS	6246394	6246458	0.54	+	0	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	exon	6246394	6246458	.	+	.	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	intron	6246459	6246672	.	+	.	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	CDS	6246673	6246753	0.74	+	1	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	exon	6246673	6246753	.	+	.	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	intron	6246754	6246881	.	+	.	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	CDS	6246882	6246963	0.77	+	1	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	exon	6246882	6246963	.	+	.	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	intron	6246964	6247060	.	+	.	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	CDS	6247061	6247088	0.76	+	0	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	exon	6247061	6247088	.	+	.	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	intron	6247089	6247330	.	+	.	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	CDS	6247331	6247344	0.76	+	2	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	exon	6247331	6247344	.	+	.	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
Ledus.S2	AUGUSTUS	stop_codon	6247345	6247347	.	+	0	transcript_id "Ledus.S2G082500.t1"; gene_id "Ledus.S2G082500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12087.t1 is derived from g5706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9462502	9463602	.	+	.	Ledus.S4G124300
Ledus.S4	AUGUSTUS	transcript	9462502	9463602	.	+	.	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	start_codon	9462502	9462504	.	+	0	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	CDS	9462502	9462611	0.5	+	0	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	exon	9462502	9462611	.	+	.	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	intron	9462612	9462681	.	+	.	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	CDS	9462682	9462947	0.42	+	1	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	exon	9462682	9462947	.	+	.	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	intron	9462948	9463024	.	+	.	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	CDS	9463025	9463154	1	+	2	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	exon	9463025	9463154	.	+	.	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	intron	9463155	9463251	.	+	.	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	CDS	9463252	9463296	1	+	1	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	exon	9463252	9463296	.	+	.	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	intron	9463297	9463383	.	+	.	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	CDS	9463384	9463406	0.69	+	1	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	exon	9463384	9463406	.	+	.	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	intron	9463407	9463501	.	+	.	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	CDS	9463502	9463602	0.79	+	2	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	exon	9463502	9463602	.	+	.	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
Ledus.S4	AUGUSTUS	stop_codon	9463603	9463605	.	+	0	transcript_id "Ledus.S4G124300.t1"; gene_id "Ledus.S4G124300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4290.t1 is derived from g1726.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16075253	16079453	.	+	.	Ledus.S1G171100
Ledus.S1	AUGUSTUS	transcript	16075253	16079453	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	start_codon	16075253	16075255	.	+	0	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	CDS	16075253	16075723	0.6	+	0	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	exon	16075253	16075723	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	intron	16075724	16075813	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	CDS	16075814	16076334	0.75	+	0	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	exon	16075814	16076334	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	intron	16076335	16076423	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	CDS	16076424	16076546	1	+	1	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	exon	16076424	16076546	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	intron	16076547	16076751	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	CDS	16076752	16076851	0.73	+	1	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	exon	16076752	16076851	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	intron	16076852	16077132	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	CDS	16077133	16077194	1	+	0	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	exon	16077133	16077194	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	intron	16077195	16077270	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	CDS	16077271	16077373	1	+	1	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	exon	16077271	16077373	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	intron	16077374	16077564	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	CDS	16077565	16077679	1	+	0	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	exon	16077565	16077679	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	intron	16077680	16077834	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	CDS	16077835	16078046	1	+	2	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	exon	16077835	16078046	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	intron	16078047	16078132	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	CDS	16078133	16079269	0.93	+	0	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	exon	16078133	16079269	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	intron	16079270	16079381	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	CDS	16079382	16079453	0.96	+	0	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	exon	16079382	16079453	.	+	.	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
Ledus.S1	AUGUSTUS	stop_codon	16079454	16079456	.	+	0	transcript_id "Ledus.S1G171100.t1"; gene_id "Ledus.S1G171100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5790.t1 is derived from g3232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26844259	26847904	.	+	.	Ledus.S1G321100
Ledus.S1	AUGUSTUS	transcript	26844259	26847904	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	start_codon	26844259	26844261	.	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26844259	26844451	0.95	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26844259	26844451	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26844452	26844559	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26844560	26844737	1	+	2	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26844560	26844737	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26844738	26844832	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26844833	26845067	0.97	+	1	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26844833	26845067	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26845068	26845177	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26845178	26845249	0.99	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26845178	26845249	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26845250	26845388	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26845389	26845499	1	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26845389	26845499	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26845500	26845608	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26845609	26845800	1	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26845609	26845800	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26845801	26845906	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26845907	26846068	1	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26845907	26846068	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26846069	26846205	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26846206	26846301	1	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26846206	26846301	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26846302	26846424	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26846425	26846526	1	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26846425	26846526	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26846527	26846649	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26846650	26846682	1	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26846650	26846682	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26846683	26846762	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26846763	26846843	1	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26846763	26846843	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26846844	26846935	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26846936	26847018	1	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26846936	26847018	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26847019	26847102	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26847103	26847234	1	+	1	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26847103	26847234	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26847235	26847376	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26847377	26847437	1	+	1	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26847377	26847437	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26847438	26847578	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26847579	26847644	1	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26847579	26847644	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	intron	26847645	26847757	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	CDS	26847758	26847904	0.96	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	exon	26847758	26847904	.	+	.	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
Ledus.S1	AUGUSTUS	stop_codon	26847905	26847907	.	+	0	transcript_id "Ledus.S1G321100.t1"; gene_id "Ledus.S1G321100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2989.t1 is derived from g424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5176468	5184526	.	+	.	Ledus.S1G041000
Ledus.S1	AUGUSTUS	transcript	5176468	5184526	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	start_codon	5176468	5176470	.	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5176468	5176545	0.28	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5176468	5176545	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5176546	5176652	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5176653	5176657	0.32	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5176653	5176657	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5176658	5176729	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5176730	5176949	0.32	+	1	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5176730	5176949	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5176950	5177175	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5177176	5177355	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5177176	5177355	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5177356	5177465	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5177466	5177517	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5177466	5177517	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5177518	5177649	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5177650	5177744	1	+	2	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5177650	5177744	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5177745	5177836	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5177837	5177968	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5177837	5177968	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5177969	5178066	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5178067	5178156	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5178067	5178156	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5178157	5178439	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5178440	5178509	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5178440	5178509	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5178510	5178629	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5178630	5178700	1	+	2	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5178630	5178700	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5178701	5178792	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5178793	5178876	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5178793	5178876	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5178877	5179012	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5179013	5179090	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5179013	5179090	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5179091	5179274	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5179275	5179346	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5179275	5179346	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5179347	5179526	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5179527	5179610	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5179527	5179610	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5179611	5179709	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5179710	5179792	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5179710	5179792	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5179793	5180062	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5180063	5180150	1	+	1	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5180063	5180150	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5180151	5180297	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5180298	5180353	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5180298	5180353	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5180354	5180449	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5180450	5180492	1	+	1	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5180450	5180492	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5180493	5180597	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5180598	5180681	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5180598	5180681	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5180682	5180781	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5180782	5180916	0.92	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5180782	5180916	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5180917	5181021	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5181022	5181087	0.92	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5181022	5181087	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5181088	5181363	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5181364	5181459	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5181364	5181459	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5181460	5181682	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5181683	5181796	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5181683	5181796	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5181797	5181889	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5181890	5182060	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5181890	5182060	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5182061	5182150	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5182151	5182210	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5182151	5182210	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5182211	5182336	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5182337	5182486	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5182337	5182486	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5182487	5182572	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5182573	5182695	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5182573	5182695	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5182696	5182794	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5182795	5182893	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5182795	5182893	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5182894	5183007	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5183008	5183145	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5183008	5183145	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5183146	5183230	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5183231	5183331	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5183231	5183331	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5183332	5183426	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5183427	5183604	1	+	1	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5183427	5183604	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5183605	5183689	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5183690	5183797	1	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5183690	5183797	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5183798	5183901	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5183902	5183993	0.95	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5183902	5183993	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5183994	5184140	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5184141	5184316	0.97	+	1	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5184141	5184316	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	intron	5184317	5184404	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	CDS	5184405	5184526	0.56	+	2	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	exon	5184405	5184526	.	+	.	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
Ledus.S1	AUGUSTUS	stop_codon	5184527	5184529	.	+	0	transcript_id "Ledus.S1G041000.t1"; gene_id "Ledus.S1G041000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5919.t1 is derived from g3362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27856556	27856916	.	-	.	Ledus.S1G334000
Ledus.S1	AUGUSTUS	transcript	27856556	27856916	.	-	.	transcript_id "Ledus.S1G334000.t1"; gene_id "Ledus.S1G334000"
Ledus.S1	AUGUSTUS	stop_codon	27856553	27856555	.	-	0	transcript_id "Ledus.S1G334000.t1"; gene_id "Ledus.S1G334000"
Ledus.S1	AUGUSTUS	CDS	27856556	27856562	0.7	-	1	transcript_id "Ledus.S1G334000.t1"; gene_id "Ledus.S1G334000"
Ledus.S1	AUGUSTUS	exon	27856556	27856562	.	-	.	transcript_id "Ledus.S1G334000.t1"; gene_id "Ledus.S1G334000"
Ledus.S1	AUGUSTUS	intron	27856563	27856713	.	-	.	transcript_id "Ledus.S1G334000.t1"; gene_id "Ledus.S1G334000"
Ledus.S1	AUGUSTUS	CDS	27856714	27856916	0.82	-	0	transcript_id "Ledus.S1G334000.t1"; gene_id "Ledus.S1G334000"
Ledus.S1	AUGUSTUS	exon	27856714	27856916	.	-	.	transcript_id "Ledus.S1G334000.t1"; gene_id "Ledus.S1G334000"
Ledus.S1	AUGUSTUS	start_codon	27856914	27856916	.	-	0	transcript_id "Ledus.S1G334000.t1"; gene_id "Ledus.S1G334000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10718.t1 is derived from g11748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17351347	17353441	.	-	.	Ledus.S3G219500
Ledus.S3	AUGUSTUS	transcript	17351347	17353441	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	stop_codon	17351344	17351346	.	-	0	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	CDS	17351347	17351437	0.98	-	1	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	exon	17351347	17351437	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	intron	17351438	17351520	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	CDS	17351521	17351657	0.96	-	0	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	exon	17351521	17351657	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	intron	17351658	17351745	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	CDS	17351746	17351896	0.48	-	1	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	exon	17351746	17351896	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	intron	17351897	17352013	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	CDS	17352014	17352135	1	-	0	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	exon	17352014	17352135	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	intron	17352136	17352305	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	CDS	17352306	17352447	1	-	1	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	exon	17352306	17352447	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	intron	17352448	17352538	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	CDS	17352539	17352695	1	-	2	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	exon	17352539	17352695	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	intron	17352696	17352774	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	CDS	17352775	17353441	1	-	0	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	exon	17352775	17353441	.	-	.	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
Ledus.S3	AUGUSTUS	start_codon	17353439	17353441	.	-	0	transcript_id "Ledus.S3G219500.t1"; gene_id "Ledus.S3G219500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg658.t1 is derived from g7519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3929091	3935970	.	-	.	Ledus.S2G054000
Ledus.S2	AUGUSTUS	transcript	3929091	3935970	.	-	.	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	stop_codon	3929088	3929090	.	-	0	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	CDS	3929091	3929388	0.96	-	1	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	exon	3929091	3929388	.	-	.	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	intron	3929389	3929488	.	-	.	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	CDS	3929489	3932106	0.98	-	0	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	exon	3929489	3932106	.	-	.	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	intron	3932107	3932215	.	-	.	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	CDS	3932216	3935266	0.99	-	0	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	exon	3932216	3935266	.	-	.	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	intron	3935267	3935349	.	-	.	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	CDS	3935350	3935970	1	-	0	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	exon	3935350	3935970	.	-	.	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
Ledus.S2	AUGUSTUS	start_codon	3935968	3935970	.	-	0	transcript_id "Ledus.S2G054000.t1"; gene_id "Ledus.S2G054000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9969.t1 is derived from g10999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11609059	11619354	.	+	.	Ledus.S3G144600
Ledus.S3	AUGUSTUS	transcript	11609059	11619354	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	start_codon	11609059	11609061	.	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11609059	11609193	0.77	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11609059	11609193	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11609194	11609297	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11609298	11609398	0.99	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11609298	11609398	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11609399	11609550	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11609551	11609671	1	+	1	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11609551	11609671	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11609672	11609754	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11609755	11609814	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11609755	11609814	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11609815	11609941	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11609942	11610009	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11609942	11610009	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11610010	11610256	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11610257	11610299	1	+	1	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11610257	11610299	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11610300	11610386	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11610387	11610452	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11610387	11610452	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11610453	11610630	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11610631	11610669	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11610631	11610669	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11610670	11610777	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11610778	11610860	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11610778	11610860	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11610861	11610963	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11610964	11611078	1	+	1	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11610964	11611078	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11611079	11611180	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11611181	11611255	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11611181	11611255	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11611256	11611423	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11611424	11611582	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11611424	11611582	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11611583	11611661	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11611662	11611769	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11611662	11611769	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11611770	11611891	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11611892	11611999	0.99	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11611892	11611999	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11612000	11612094	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11612095	11612235	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11612095	11612235	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11612236	11612324	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11612325	11612429	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11612325	11612429	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11612430	11612561	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11612562	11612783	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11612562	11612783	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11612784	11612904	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11612905	11613021	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11612905	11613021	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11613022	11613121	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11613122	11613337	0.99	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11613122	11613337	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11613338	11613451	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11613452	11613511	0.87	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11613452	11613511	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11613512	11613621	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11613622	11613735	0.9	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11613622	11613735	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11613736	11613824	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11613825	11613910	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11613825	11613910	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11613911	11614053	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11614054	11614162	1	+	1	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11614054	11614162	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11614163	11614258	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11614259	11614437	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11614259	11614437	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11614438	11614525	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11614526	11614602	0.96	+	1	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11614526	11614602	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11614603	11614956	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11614957	11615046	0.75	+	2	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11614957	11615046	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11615047	11615601	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11615602	11615687	1	+	2	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11615602	11615687	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11615688	11615855	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11615856	11615927	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11615856	11615927	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11615928	11616091	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11616092	11616154	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11616092	11616154	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11616155	11616271	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11616272	11616358	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11616272	11616358	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11616359	11616447	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11616448	11616598	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11616448	11616598	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11616599	11616780	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11616781	11616905	1	+	2	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11616781	11616905	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11616906	11617017	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11617018	11617134	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11617018	11617134	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11617135	11617260	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11617261	11617356	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11617261	11617356	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11617357	11617530	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11617531	11617590	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11617531	11617590	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11617591	11617677	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11617678	11617752	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11617678	11617752	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11617753	11617959	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11617960	11618064	0.99	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11617960	11618064	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11618065	11618176	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11618177	11618293	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11618177	11618293	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11618294	11618472	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11618473	11618550	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11618473	11618550	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11618551	11618668	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11618669	11618765	1	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11618669	11618765	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11618766	11618932	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11618933	11618984	1	+	2	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11618933	11618984	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11618985	11619081	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11619082	11619152	1	+	1	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11619082	11619152	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	intron	11619153	11619247	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	CDS	11619248	11619354	0.79	+	2	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	exon	11619248	11619354	.	+	.	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
Ledus.S3	AUGUSTUS	stop_codon	11619355	11619357	.	+	0	transcript_id "Ledus.S3G144600.t1"; gene_id "Ledus.S3G144600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5215.t1 is derived from g2654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22497659	22498117	.	-	.	Ledus.S1G263600
Ledus.S1	AUGUSTUS	transcript	22497659	22498117	.	-	.	transcript_id "Ledus.S1G263600.t1"; gene_id "Ledus.S1G263600"
Ledus.S1	AUGUSTUS	stop_codon	22497656	22497658	.	-	0	transcript_id "Ledus.S1G263600.t1"; gene_id "Ledus.S1G263600"
Ledus.S1	AUGUSTUS	CDS	22497659	22498117	0.49	-	0	transcript_id "Ledus.S1G263600.t1"; gene_id "Ledus.S1G263600"
Ledus.S1	AUGUSTUS	exon	22497659	22498117	.	-	.	transcript_id "Ledus.S1G263600.t1"; gene_id "Ledus.S1G263600"
Ledus.S1	AUGUSTUS	start_codon	22498115	22498117	.	-	0	transcript_id "Ledus.S1G263600.t1"; gene_id "Ledus.S1G263600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10005.t1 is derived from g11035.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11814532	11815833	.	-	.	Ledus.S3G148200
Ledus.S3	AUGUSTUS	transcript	11814532	11815833	.	-	.	transcript_id "Ledus.S3G148200.t1"; gene_id "Ledus.S3G148200"
Ledus.S3	AUGUSTUS	stop_codon	11814529	11814531	.	-	0	transcript_id "Ledus.S3G148200.t1"; gene_id "Ledus.S3G148200"
Ledus.S3	AUGUSTUS	CDS	11814532	11815833	0.99	-	0	transcript_id "Ledus.S3G148200.t1"; gene_id "Ledus.S3G148200"
Ledus.S3	AUGUSTUS	exon	11814532	11815833	.	-	.	transcript_id "Ledus.S3G148200.t1"; gene_id "Ledus.S3G148200"
Ledus.S3	AUGUSTUS	start_codon	11815831	11815833	.	-	0	transcript_id "Ledus.S3G148200.t1"; gene_id "Ledus.S3G148200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11241.t1 is derived from g4859.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2875412	2875783	.	+	.	Ledus.S4G039700
Ledus.S4	AUGUSTUS	transcript	2875412	2875783	.	+	.	transcript_id "Ledus.S4G039700.t1"; gene_id "Ledus.S4G039700"
Ledus.S4	AUGUSTUS	start_codon	2875412	2875414	.	+	0	transcript_id "Ledus.S4G039700.t1"; gene_id "Ledus.S4G039700"
Ledus.S4	AUGUSTUS	CDS	2875412	2875783	0.59	+	0	transcript_id "Ledus.S4G039700.t1"; gene_id "Ledus.S4G039700"
Ledus.S4	AUGUSTUS	exon	2875412	2875783	.	+	.	transcript_id "Ledus.S4G039700.t1"; gene_id "Ledus.S4G039700"
Ledus.S4	AUGUSTUS	stop_codon	2875784	2875786	.	+	0	transcript_id "Ledus.S4G039700.t1"; gene_id "Ledus.S4G039700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12729.t1 is derived from g6351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14117174	14119309	.	-	.	Ledus.S4G188500
Ledus.S4	AUGUSTUS	transcript	14117174	14119309	.	-	.	transcript_id "Ledus.S4G188500.t1"; gene_id "Ledus.S4G188500"
Ledus.S4	AUGUSTUS	stop_codon	14117171	14117173	.	-	0	transcript_id "Ledus.S4G188500.t1"; gene_id "Ledus.S4G188500"
Ledus.S4	AUGUSTUS	CDS	14117174	14118909	1	-	2	transcript_id "Ledus.S4G188500.t1"; gene_id "Ledus.S4G188500"
Ledus.S4	AUGUSTUS	exon	14117174	14118909	.	-	.	transcript_id "Ledus.S4G188500.t1"; gene_id "Ledus.S4G188500"
Ledus.S4	AUGUSTUS	intron	14118910	14119095	.	-	.	transcript_id "Ledus.S4G188500.t1"; gene_id "Ledus.S4G188500"
Ledus.S4	AUGUSTUS	CDS	14119096	14119309	1	-	0	transcript_id "Ledus.S4G188500.t1"; gene_id "Ledus.S4G188500"
Ledus.S4	AUGUSTUS	exon	14119096	14119309	.	-	.	transcript_id "Ledus.S4G188500.t1"; gene_id "Ledus.S4G188500"
Ledus.S4	AUGUSTUS	start_codon	14119307	14119309	.	-	0	transcript_id "Ledus.S4G188500.t1"; gene_id "Ledus.S4G188500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg889.t1 is derived from g7750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5971353	5974148	.	-	.	Ledus.S2G077100
Ledus.S2	AUGUSTUS	transcript	5971353	5974148	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	stop_codon	5971350	5971352	.	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5971353	5971532	1	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5971353	5971532	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5971533	5971626	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5971627	5971753	1	-	1	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5971627	5971753	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5971754	5971821	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5971822	5971949	1	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5971822	5971949	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5971950	5972038	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5972039	5972080	1	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5972039	5972080	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5972081	5972181	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5972182	5972223	1	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5972182	5972223	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5972224	5972304	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5972305	5972397	1	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5972305	5972397	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5972398	5972552	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5972553	5972648	0.97	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5972553	5972648	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5972649	5972749	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5972750	5972854	0.79	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5972750	5972854	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5972855	5973042	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5973043	5973225	1	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5973043	5973225	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5973226	5973322	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5973323	5973398	1	-	1	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5973323	5973398	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5973399	5973501	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5973502	5973581	1	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5973502	5973581	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5973582	5973664	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5973665	5973760	1	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5973665	5973760	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5973761	5973845	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5973846	5974148	1	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5973846	5974148	.	-	.	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	start_codon	5974146	5974148	.	-	0	transcript_id "Ledus.S2G077100.t1"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	transcript	5972397	5974148	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	stop_codon	5972394	5972396	.	-	0	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5972397	5972405	0.99	-	0	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5972397	5972405	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5972406	5972552	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5972553	5972648	0.98	-	0	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5972553	5972648	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5972649	5972749	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5972750	5972854	0.87	-	0	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5972750	5972854	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5972855	5973042	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5973043	5973225	1	-	0	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5973043	5973225	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5973226	5973322	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5973323	5973398	1	-	1	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5973323	5973398	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5973399	5973501	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5973502	5973581	1	-	0	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5973502	5973581	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5973582	5973664	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5973665	5973760	1	-	0	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5973665	5973760	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	intron	5973761	5973845	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	CDS	5973846	5974148	1	-	0	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	exon	5973846	5974148	.	-	.	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
Ledus.S2	AUGUSTUS	start_codon	5974146	5974148	.	-	0	transcript_id "Ledus.S2G077100.t2"; gene_id "Ledus.S2G077100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4647.t1 is derived from g2085.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18631756	18633356	.	-	.	Ledus.S1G206800
Ledus.S1	AUGUSTUS	transcript	18631756	18633356	.	-	.	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	stop_codon	18631753	18631755	.	-	0	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	CDS	18631756	18631917	0.46	-	0	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	exon	18631756	18631917	.	-	.	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	intron	18631918	18632044	.	-	.	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	CDS	18632045	18632088	0.34	-	2	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	exon	18632045	18632088	.	-	.	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	intron	18632089	18632269	.	-	.	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	CDS	18632270	18632721	0.35	-	1	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	exon	18632270	18632721	.	-	.	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	intron	18632722	18632904	.	-	.	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	CDS	18632905	18633356	0.92	-	0	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	exon	18632905	18633356	.	-	.	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
Ledus.S1	AUGUSTUS	start_codon	18633354	18633356	.	-	0	transcript_id "Ledus.S1G206800.t1"; gene_id "Ledus.S1G206800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3603.t1 is derived from g1039.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10035352	10035561	.	+	.	Ledus.S1G102400
Ledus.S1	AUGUSTUS	transcript	10035352	10035561	.	+	.	transcript_id "Ledus.S1G102400.t1"; gene_id "Ledus.S1G102400"
Ledus.S1	AUGUSTUS	start_codon	10035352	10035354	.	+	0	transcript_id "Ledus.S1G102400.t1"; gene_id "Ledus.S1G102400"
Ledus.S1	AUGUSTUS	CDS	10035352	10035561	0.78	+	0	transcript_id "Ledus.S1G102400.t1"; gene_id "Ledus.S1G102400"
Ledus.S1	AUGUSTUS	exon	10035352	10035561	.	+	.	transcript_id "Ledus.S1G102400.t1"; gene_id "Ledus.S1G102400"
Ledus.S1	AUGUSTUS	stop_codon	10035562	10035564	.	+	0	transcript_id "Ledus.S1G102400.t1"; gene_id "Ledus.S1G102400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2779.t1 is derived from g213.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3493466	3494323	.	+	.	Ledus.S1G020000
Ledus.S1	AUGUSTUS	transcript	3493466	3494323	.	+	.	transcript_id "Ledus.S1G020000.t1"; gene_id "Ledus.S1G020000"
Ledus.S1	AUGUSTUS	start_codon	3493466	3493468	.	+	0	transcript_id "Ledus.S1G020000.t1"; gene_id "Ledus.S1G020000"
Ledus.S1	AUGUSTUS	CDS	3493466	3493686	0.81	+	0	transcript_id "Ledus.S1G020000.t1"; gene_id "Ledus.S1G020000"
Ledus.S1	AUGUSTUS	exon	3493466	3493686	.	+	.	transcript_id "Ledus.S1G020000.t1"; gene_id "Ledus.S1G020000"
Ledus.S1	AUGUSTUS	intron	3493687	3493815	.	+	.	transcript_id "Ledus.S1G020000.t1"; gene_id "Ledus.S1G020000"
Ledus.S1	AUGUSTUS	CDS	3493816	3494323	0.98	+	1	transcript_id "Ledus.S1G020000.t1"; gene_id "Ledus.S1G020000"
Ledus.S1	AUGUSTUS	exon	3493816	3494323	.	+	.	transcript_id "Ledus.S1G020000.t1"; gene_id "Ledus.S1G020000"
Ledus.S1	AUGUSTUS	stop_codon	3494324	3494326	.	+	0	transcript_id "Ledus.S1G020000.t1"; gene_id "Ledus.S1G020000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1473.t1 is derived from g8334.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10381282	10382621	.	+	.	Ledus.S2G135500
Ledus.S2	AUGUSTUS	transcript	10381282	10382621	.	+	.	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	start_codon	10381282	10381284	.	+	0	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	CDS	10381282	10381480	0.96	+	0	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	exon	10381282	10381480	.	+	.	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	intron	10381481	10381775	.	+	.	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	CDS	10381776	10381873	0.98	+	2	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	exon	10381776	10381873	.	+	.	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	intron	10381874	10381981	.	+	.	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	CDS	10381982	10382086	0.98	+	0	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	exon	10381982	10382086	.	+	.	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	intron	10382087	10382199	.	+	.	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	CDS	10382200	10382265	1	+	0	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	exon	10382200	10382265	.	+	.	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	intron	10382266	10382351	.	+	.	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	CDS	10382352	10382438	1	+	0	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	exon	10382352	10382438	.	+	.	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	intron	10382439	10382573	.	+	.	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	CDS	10382574	10382621	0.99	+	0	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	exon	10382574	10382621	.	+	.	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
Ledus.S2	AUGUSTUS	stop_codon	10382622	10382624	.	+	0	transcript_id "Ledus.S2G135500.t1"; gene_id "Ledus.S2G135500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10836.t1 is derived from g5.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C22	AUGUSTUS	gene	12278	14518	.	-	.	Ledus.C22G000300
Ledus.C22	AUGUSTUS	transcript	12278	14518	.	-	.	transcript_id "Ledus.C22G000300.t1"; gene_id "Ledus.C22G000300"
Ledus.C22	AUGUSTUS	stop_codon	12275	12277	.	-	0	transcript_id "Ledus.C22G000300.t1"; gene_id "Ledus.C22G000300"
Ledus.C22	AUGUSTUS	CDS	12278	14518	0.9	-	0	transcript_id "Ledus.C22G000300.t1"; gene_id "Ledus.C22G000300"
Ledus.C22	AUGUSTUS	exon	12278	14518	.	-	.	transcript_id "Ledus.C22G000300.t1"; gene_id "Ledus.C22G000300"
Ledus.C22	AUGUSTUS	start_codon	14516	14518	.	-	0	transcript_id "Ledus.C22G000300.t1"; gene_id "Ledus.C22G000300"
# This transcript jg9199.t2 is derived from g10229.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9200.t1 is derived from g10230.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5323301	5325246	.	-	.	Ledus.S3G067700
Ledus.S3	AUGUSTUS	transcript	5323301	5325246	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	stop_codon	5323298	5323300	.	-	0	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	CDS	5323301	5323500	1	-	2	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	exon	5323301	5323500	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	intron	5323501	5323579	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	CDS	5323580	5323724	0.99	-	0	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	exon	5323580	5323724	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	intron	5323725	5323831	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	CDS	5323832	5323981	1	-	0	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	exon	5323832	5323981	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	intron	5323982	5324076	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	CDS	5324077	5324508	0.99	-	0	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	exon	5324077	5324508	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	intron	5324509	5324582	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	CDS	5324583	5324750	1	-	0	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	exon	5324583	5324750	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	intron	5324751	5324839	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	CDS	5324840	5324902	0.7	-	0	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	exon	5324840	5324902	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	intron	5324903	5325060	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	CDS	5325061	5325102	0.7	-	0	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	exon	5325061	5325102	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	intron	5325103	5325189	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	CDS	5325190	5325246	0.63	-	0	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	exon	5325190	5325246	.	-	.	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
Ledus.S3	AUGUSTUS	start_codon	5325244	5325246	.	-	0	transcript_id "Ledus.S3G067700.t1"; gene_id "Ledus.S3G067700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2619.t1 is derived from g52.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	586728	590293	.	+	.	Ledus.S1G004000
Ledus.S1	AUGUSTUS	transcript	586728	590293	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	start_codon	586728	586730	.	+	0	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	CDS	586728	586844	0.74	+	0	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	exon	586728	586844	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	intron	586845	586990	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	CDS	586991	587028	1	+	0	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	exon	586991	587028	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	intron	587029	587334	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	CDS	587335	587562	1	+	1	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	exon	587335	587562	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	intron	587563	587734	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	CDS	587735	587958	1	+	1	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	exon	587735	587958	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	intron	587959	588056	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	CDS	588057	588214	0.99	+	2	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	exon	588057	588214	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	intron	588215	588318	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	CDS	588319	588841	1	+	0	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	exon	588319	588841	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	intron	588842	588995	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	CDS	588996	590293	0.43	+	2	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	exon	588996	590293	.	+	.	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
Ledus.S1	AUGUSTUS	stop_codon	590294	590296	.	+	0	transcript_id "Ledus.S1G004000.t1"; gene_id "Ledus.S1G004000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4837.t1 is derived from g2275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20075075	20075529	.	-	.	Ledus.S1G225800
Ledus.S1	AUGUSTUS	transcript	20075075	20075529	.	-	.	transcript_id "Ledus.S1G225800.t1"; gene_id "Ledus.S1G225800"
Ledus.S1	AUGUSTUS	stop_codon	20075072	20075074	.	-	0	transcript_id "Ledus.S1G225800.t1"; gene_id "Ledus.S1G225800"
Ledus.S1	AUGUSTUS	CDS	20075075	20075101	1	-	0	transcript_id "Ledus.S1G225800.t1"; gene_id "Ledus.S1G225800"
Ledus.S1	AUGUSTUS	exon	20075075	20075101	.	-	.	transcript_id "Ledus.S1G225800.t1"; gene_id "Ledus.S1G225800"
Ledus.S1	AUGUSTUS	intron	20075102	20075181	.	-	.	transcript_id "Ledus.S1G225800.t1"; gene_id "Ledus.S1G225800"
Ledus.S1	AUGUSTUS	CDS	20075182	20075529	0.91	-	0	transcript_id "Ledus.S1G225800.t1"; gene_id "Ledus.S1G225800"
Ledus.S1	AUGUSTUS	exon	20075182	20075529	.	-	.	transcript_id "Ledus.S1G225800.t1"; gene_id "Ledus.S1G225800"
Ledus.S1	AUGUSTUS	start_codon	20075527	20075529	.	-	0	transcript_id "Ledus.S1G225800.t1"; gene_id "Ledus.S1G225800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4499.t1 is derived from g1935.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17387833	17388219	.	+	.	Ledus.S1G192000
Ledus.S1	AUGUSTUS	transcript	17387833	17388219	.	+	.	transcript_id "Ledus.S1G192000.t1"; gene_id "Ledus.S1G192000"
Ledus.S1	AUGUSTUS	start_codon	17387833	17387835	.	+	0	transcript_id "Ledus.S1G192000.t1"; gene_id "Ledus.S1G192000"
Ledus.S1	AUGUSTUS	CDS	17387833	17388219	0.55	+	0	transcript_id "Ledus.S1G192000.t1"; gene_id "Ledus.S1G192000"
Ledus.S1	AUGUSTUS	exon	17387833	17388219	.	+	.	transcript_id "Ledus.S1G192000.t1"; gene_id "Ledus.S1G192000"
Ledus.S1	AUGUSTUS	stop_codon	17388220	17388222	.	+	0	transcript_id "Ledus.S1G192000.t1"; gene_id "Ledus.S1G192000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1236.t1 is derived from g8097.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8777644	8779616	.	+	.	Ledus.S2G111800
Ledus.S2	AUGUSTUS	transcript	8777644	8779616	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	start_codon	8777644	8777646	.	+	0	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	CDS	8777644	8777949	0.79	+	0	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	exon	8777644	8777949	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	intron	8777950	8778019	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	CDS	8778020	8778129	1	+	0	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	exon	8778020	8778129	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	intron	8778130	8778208	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	CDS	8778209	8778266	1	+	1	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	exon	8778209	8778266	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	intron	8778267	8778338	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	CDS	8778339	8778602	1	+	0	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	exon	8778339	8778602	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	intron	8778603	8778690	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	CDS	8778691	8778828	1	+	0	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	exon	8778691	8778828	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	intron	8778829	8778916	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	CDS	8778917	8778968	1	+	0	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	exon	8778917	8778968	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	intron	8778969	8779056	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	CDS	8779057	8779136	1	+	2	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	exon	8779057	8779136	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	intron	8779137	8779214	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	CDS	8779215	8779274	1	+	0	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	exon	8779215	8779274	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	intron	8779275	8779349	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	CDS	8779350	8779430	1	+	0	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	exon	8779350	8779430	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	intron	8779431	8779526	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	CDS	8779527	8779616	1	+	0	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	exon	8779527	8779616	.	+	.	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
Ledus.S2	AUGUSTUS	stop_codon	8779617	8779619	.	+	0	transcript_id "Ledus.S2G111800.t1"; gene_id "Ledus.S2G111800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6579.t1 is derived from g4022.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32472915	32478744	.	+	.	Ledus.S1G400000
Ledus.S1	AUGUSTUS	transcript	32472915	32478744	.	+	.	transcript_id "Ledus.S1G400000.t1"; gene_id "Ledus.S1G400000"
Ledus.S1	AUGUSTUS	start_codon	32472915	32472917	.	+	0	transcript_id "Ledus.S1G400000.t1"; gene_id "Ledus.S1G400000"
Ledus.S1	AUGUSTUS	CDS	32472915	32473354	0.79	+	0	transcript_id "Ledus.S1G400000.t1"; gene_id "Ledus.S1G400000"
Ledus.S1	AUGUSTUS	exon	32472915	32473354	.	+	.	transcript_id "Ledus.S1G400000.t1"; gene_id "Ledus.S1G400000"
Ledus.S1	AUGUSTUS	intron	32473355	32473480	.	+	.	transcript_id "Ledus.S1G400000.t1"; gene_id "Ledus.S1G400000"
Ledus.S1	AUGUSTUS	CDS	32473481	32473514	0.64	+	1	transcript_id "Ledus.S1G400000.t1"; gene_id "Ledus.S1G400000"
Ledus.S1	AUGUSTUS	exon	32473481	32473514	.	+	.	transcript_id "Ledus.S1G400000.t1"; gene_id "Ledus.S1G400000"
Ledus.S1	AUGUSTUS	intron	32473515	32473620	.	+	.	transcript_id "Ledus.S1G400000.t1"; gene_id "Ledus.S1G400000"
Ledus.S1	AUGUSTUS	CDS	32473621	32478744	0.86	+	0	transcript_id "Ledus.S1G400000.t1"; gene_id "Ledus.S1G400000"
Ledus.S1	AUGUSTUS	exon	32473621	32478744	.	+	.	transcript_id "Ledus.S1G400000.t1"; gene_id "Ledus.S1G400000"
Ledus.S1	AUGUSTUS	stop_codon	32478745	32478747	.	+	0	transcript_id "Ledus.S1G400000.t1"; gene_id "Ledus.S1G400000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8181.t1 is derived from g12852.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9699581	9701332	.	+	.	Ledus.S5G095900
Ledus.S5	AUGUSTUS	transcript	9699581	9701332	.	+	.	transcript_id "Ledus.S5G095900.t1"; gene_id "Ledus.S5G095900"
Ledus.S5	AUGUSTUS	start_codon	9699581	9699583	.	+	0	transcript_id "Ledus.S5G095900.t1"; gene_id "Ledus.S5G095900"
Ledus.S5	AUGUSTUS	CDS	9699581	9699778	1	+	0	transcript_id "Ledus.S5G095900.t1"; gene_id "Ledus.S5G095900"
Ledus.S5	AUGUSTUS	exon	9699581	9699778	.	+	.	transcript_id "Ledus.S5G095900.t1"; gene_id "Ledus.S5G095900"
Ledus.S5	AUGUSTUS	intron	9699779	9699868	.	+	.	transcript_id "Ledus.S5G095900.t1"; gene_id "Ledus.S5G095900"
Ledus.S5	AUGUSTUS	CDS	9699869	9701332	0.99	+	0	transcript_id "Ledus.S5G095900.t1"; gene_id "Ledus.S5G095900"
Ledus.S5	AUGUSTUS	exon	9699869	9701332	.	+	.	transcript_id "Ledus.S5G095900.t1"; gene_id "Ledus.S5G095900"
Ledus.S5	AUGUSTUS	stop_codon	9701333	9701335	.	+	0	transcript_id "Ledus.S5G095900.t1"; gene_id "Ledus.S5G095900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4115.t1 is derived from g1551.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14773957	14776578	.	+	.	Ledus.S1G153600
Ledus.S1	AUGUSTUS	transcript	14773957	14776578	.	+	.	transcript_id "Ledus.S1G153600.t1"; gene_id "Ledus.S1G153600"
Ledus.S1	AUGUSTUS	start_codon	14773957	14773959	.	+	0	transcript_id "Ledus.S1G153600.t1"; gene_id "Ledus.S1G153600"
Ledus.S1	AUGUSTUS	CDS	14773957	14774942	0.24	+	0	transcript_id "Ledus.S1G153600.t1"; gene_id "Ledus.S1G153600"
Ledus.S1	AUGUSTUS	exon	14773957	14774942	.	+	.	transcript_id "Ledus.S1G153600.t1"; gene_id "Ledus.S1G153600"
Ledus.S1	AUGUSTUS	intron	14774943	14775065	.	+	.	transcript_id "Ledus.S1G153600.t1"; gene_id "Ledus.S1G153600"
Ledus.S1	AUGUSTUS	CDS	14775066	14776578	0.3	+	1	transcript_id "Ledus.S1G153600.t1"; gene_id "Ledus.S1G153600"
Ledus.S1	AUGUSTUS	exon	14775066	14776578	.	+	.	transcript_id "Ledus.S1G153600.t1"; gene_id "Ledus.S1G153600"
Ledus.S1	AUGUSTUS	stop_codon	14776579	14776581	.	+	0	transcript_id "Ledus.S1G153600.t1"; gene_id "Ledus.S1G153600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4511.t1 is derived from g1947.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17460306	17461706	.	+	.	Ledus.S1G193200
Ledus.S1	AUGUSTUS	transcript	17460306	17461706	.	+	.	transcript_id "Ledus.S1G193200.t1"; gene_id "Ledus.S1G193200"
Ledus.S1	AUGUSTUS	start_codon	17460306	17460308	.	+	0	transcript_id "Ledus.S1G193200.t1"; gene_id "Ledus.S1G193200"
Ledus.S1	AUGUSTUS	CDS	17460306	17461706	0.38	+	0	transcript_id "Ledus.S1G193200.t1"; gene_id "Ledus.S1G193200"
Ledus.S1	AUGUSTUS	exon	17460306	17461706	.	+	.	transcript_id "Ledus.S1G193200.t1"; gene_id "Ledus.S1G193200"
Ledus.S1	AUGUSTUS	stop_codon	17461707	17461709	.	+	0	transcript_id "Ledus.S1G193200.t1"; gene_id "Ledus.S1G193200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10684.t1 is derived from g11714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17072444	17073171	.	+	.	Ledus.S3G216100
Ledus.S3	AUGUSTUS	transcript	17072444	17073171	.	+	.	transcript_id "Ledus.S3G216100.t1"; gene_id "Ledus.S3G216100"
Ledus.S3	AUGUSTUS	start_codon	17072444	17072446	.	+	0	transcript_id "Ledus.S3G216100.t1"; gene_id "Ledus.S3G216100"
Ledus.S3	AUGUSTUS	CDS	17072444	17072729	0.91	+	0	transcript_id "Ledus.S3G216100.t1"; gene_id "Ledus.S3G216100"
Ledus.S3	AUGUSTUS	exon	17072444	17072729	.	+	.	transcript_id "Ledus.S3G216100.t1"; gene_id "Ledus.S3G216100"
Ledus.S3	AUGUSTUS	intron	17072730	17072818	.	+	.	transcript_id "Ledus.S3G216100.t1"; gene_id "Ledus.S3G216100"
Ledus.S3	AUGUSTUS	CDS	17072819	17073171	0.84	+	2	transcript_id "Ledus.S3G216100.t1"; gene_id "Ledus.S3G216100"
Ledus.S3	AUGUSTUS	exon	17072819	17073171	.	+	.	transcript_id "Ledus.S3G216100.t1"; gene_id "Ledus.S3G216100"
Ledus.S3	AUGUSTUS	stop_codon	17073172	17073174	.	+	0	transcript_id "Ledus.S3G216100.t1"; gene_id "Ledus.S3G216100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9634.t1 is derived from g10664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8483417	8484058	.	-	.	Ledus.S3G111100
Ledus.S3	AUGUSTUS	transcript	8483417	8484058	.	-	.	transcript_id "Ledus.S3G111100.t1"; gene_id "Ledus.S3G111100"
Ledus.S3	AUGUSTUS	stop_codon	8483414	8483416	.	-	0	transcript_id "Ledus.S3G111100.t1"; gene_id "Ledus.S3G111100"
Ledus.S3	AUGUSTUS	CDS	8483417	8483423	0.97	-	1	transcript_id "Ledus.S3G111100.t1"; gene_id "Ledus.S3G111100"
Ledus.S3	AUGUSTUS	exon	8483417	8483423	.	-	.	transcript_id "Ledus.S3G111100.t1"; gene_id "Ledus.S3G111100"
Ledus.S3	AUGUSTUS	intron	8483424	8483511	.	-	.	transcript_id "Ledus.S3G111100.t1"; gene_id "Ledus.S3G111100"
Ledus.S3	AUGUSTUS	CDS	8483512	8483544	0.98	-	1	transcript_id "Ledus.S3G111100.t1"; gene_id "Ledus.S3G111100"
Ledus.S3	AUGUSTUS	exon	8483512	8483544	.	-	.	transcript_id "Ledus.S3G111100.t1"; gene_id "Ledus.S3G111100"
Ledus.S3	AUGUSTUS	intron	8483545	8483621	.	-	.	transcript_id "Ledus.S3G111100.t1"; gene_id "Ledus.S3G111100"
Ledus.S3	AUGUSTUS	CDS	8483622	8484058	0.56	-	0	transcript_id "Ledus.S3G111100.t1"; gene_id "Ledus.S3G111100"
Ledus.S3	AUGUSTUS	exon	8483622	8484058	.	-	.	transcript_id "Ledus.S3G111100.t1"; gene_id "Ledus.S3G111100"
Ledus.S3	AUGUSTUS	start_codon	8484056	8484058	.	-	0	transcript_id "Ledus.S3G111100.t1"; gene_id "Ledus.S3G111100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg5080.t1 is derived from g2519.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21478788	21481589	.	-	.	Ledus.S1G250100
Ledus.S1	AUGUSTUS	transcript	21478788	21481589	.	-	.	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	stop_codon	21478785	21478787	.	-	0	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21478788	21479100	0.64	-	1	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21478788	21479100	.	-	.	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479101	21479211	.	-	.	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479212	21479304	0.98	-	1	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479212	21479304	.	-	.	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479305	21479409	.	-	.	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479410	21479516	0.98	-	0	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479410	21479516	.	-	.	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479517	21479628	.	-	.	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479629	21479736	0.96	-	0	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479629	21479736	.	-	.	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479737	21479896	.	-	.	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479897	21480061	0.66	-	0	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479897	21480061	.	-	.	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21480062	21480161	.	-	.	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21480162	21481589	0.76	-	0	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21480162	21481589	.	-	.	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	start_codon	21481587	21481589	.	-	0	transcript_id "Ledus.S1G250100.t1"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	transcript	21478788	21481589	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	stop_codon	21478785	21478787	.	-	0	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21478788	21479100	0.63	-	1	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21478788	21479100	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479101	21479211	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479212	21479304	0.93	-	1	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479212	21479304	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479305	21479409	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479410	21479516	0.97	-	0	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479410	21479516	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479517	21479590	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479591	21479654	0.65	-	1	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479591	21479654	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479655	21479702	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479703	21479736	0.74	-	2	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479703	21479736	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479737	21479901	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479902	21480061	0.76	-	0	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479902	21480061	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21480062	21480161	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21480162	21481589	0.86	-	0	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21480162	21481589	.	-	.	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	start_codon	21481587	21481589	.	-	0	transcript_id "Ledus.S1G250100.t2"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	transcript	21478788	21481589	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	stop_codon	21478785	21478787	.	-	0	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21478788	21479100	0.59	-	1	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21478788	21479100	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479101	21479211	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479212	21479304	0.93	-	1	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479212	21479304	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479305	21479409	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479410	21479516	0.98	-	0	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479410	21479516	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479517	21479590	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479591	21479628	0.68	-	2	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479591	21479628	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479629	21479702	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479703	21479736	0.67	-	0	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479703	21479736	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21479737	21479896	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21479897	21480061	0.99	-	0	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21479897	21480061	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	intron	21480062	21480161	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	CDS	21480162	21481589	0.83	-	0	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	exon	21480162	21481589	.	-	.	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
Ledus.S1	AUGUSTUS	start_codon	21481587	21481589	.	-	0	transcript_id "Ledus.S1G250100.t3"; gene_id "Ledus.S1G250100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4166.t1 is derived from g1602.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15089637	15089870	.	+	.	Ledus.S1G158700
Ledus.S1	AUGUSTUS	transcript	15089637	15089870	.	+	.	transcript_id "Ledus.S1G158700.t1"; gene_id "Ledus.S1G158700"
Ledus.S1	AUGUSTUS	start_codon	15089637	15089639	.	+	0	transcript_id "Ledus.S1G158700.t1"; gene_id "Ledus.S1G158700"
Ledus.S1	AUGUSTUS	CDS	15089637	15089870	0.62	+	0	transcript_id "Ledus.S1G158700.t1"; gene_id "Ledus.S1G158700"
Ledus.S1	AUGUSTUS	exon	15089637	15089870	.	+	.	transcript_id "Ledus.S1G158700.t1"; gene_id "Ledus.S1G158700"
Ledus.S1	AUGUSTUS	stop_codon	15089871	15089873	.	+	0	transcript_id "Ledus.S1G158700.t1"; gene_id "Ledus.S1G158700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10034.t1 is derived from g11064.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12094603	12096520	.	-	.	Ledus.S3G151100
Ledus.S3	AUGUSTUS	transcript	12094603	12096520	.	-	.	transcript_id "Ledus.S3G151100.t1"; gene_id "Ledus.S3G151100"
Ledus.S3	AUGUSTUS	stop_codon	12094600	12094602	.	-	0	transcript_id "Ledus.S3G151100.t1"; gene_id "Ledus.S3G151100"
Ledus.S3	AUGUSTUS	CDS	12094603	12095075	1	-	2	transcript_id "Ledus.S3G151100.t1"; gene_id "Ledus.S3G151100"
Ledus.S3	AUGUSTUS	exon	12094603	12095075	.	-	.	transcript_id "Ledus.S3G151100.t1"; gene_id "Ledus.S3G151100"
Ledus.S3	AUGUSTUS	intron	12095076	12095154	.	-	.	transcript_id "Ledus.S3G151100.t1"; gene_id "Ledus.S3G151100"
Ledus.S3	AUGUSTUS	CDS	12095155	12095571	1	-	2	transcript_id "Ledus.S3G151100.t1"; gene_id "Ledus.S3G151100"
Ledus.S3	AUGUSTUS	exon	12095155	12095571	.	-	.	transcript_id "Ledus.S3G151100.t1"; gene_id "Ledus.S3G151100"
Ledus.S3	AUGUSTUS	intron	12095572	12095649	.	-	.	transcript_id "Ledus.S3G151100.t1"; gene_id "Ledus.S3G151100"
Ledus.S3	AUGUSTUS	CDS	12095650	12096520	0.87	-	0	transcript_id "Ledus.S3G151100.t1"; gene_id "Ledus.S3G151100"
Ledus.S3	AUGUSTUS	exon	12095650	12096520	.	-	.	transcript_id "Ledus.S3G151100.t1"; gene_id "Ledus.S3G151100"
Ledus.S3	AUGUSTUS	start_codon	12096518	12096520	.	-	0	transcript_id "Ledus.S3G151100.t1"; gene_id "Ledus.S3G151100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3946.t1 is derived from g1382.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13684084	13690930	.	-	.	Ledus.S1G136700
Ledus.S1	AUGUSTUS	transcript	13684084	13690930	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	stop_codon	13684081	13684083	.	-	0	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13684084	13686553	0.54	-	1	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13684084	13686553	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13686554	13686649	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13686650	13686738	0.57	-	0	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13686650	13686738	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13686739	13686836	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13686837	13686929	1	-	0	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13686837	13686929	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13686930	13687029	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13687030	13687158	1	-	0	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13687030	13687158	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13687159	13687294	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13687295	13687342	1	-	0	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13687295	13687342	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13687343	13687489	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13687490	13687591	1	-	0	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13687490	13687591	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13687592	13687685	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13687686	13687769	1	-	0	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13687686	13687769	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13687770	13687926	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13687927	13688013	0.92	-	0	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13687927	13688013	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13688014	13688604	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13688605	13688701	0.68	-	1	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13688605	13688701	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13688702	13688810	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13688811	13688943	0.99	-	2	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13688811	13688943	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13688944	13689027	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13689028	13689144	1	-	2	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13689028	13689144	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13689145	13689224	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13689225	13689351	0.95	-	0	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13689225	13689351	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13689352	13689435	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13689436	13689625	0.83	-	1	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13689436	13689625	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13689626	13690212	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13690213	13690663	0.26	-	2	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13690213	13690663	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	intron	13690664	13690749	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	CDS	13690750	13690930	0.78	-	0	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	exon	13690750	13690930	.	-	.	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
Ledus.S1	AUGUSTUS	start_codon	13690928	13690930	.	-	0	transcript_id "Ledus.S1G136700.t1"; gene_id "Ledus.S1G136700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg640.t1 is derived from g7501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3837900	3839669	.	-	.	Ledus.S2G052200
Ledus.S2	AUGUSTUS	transcript	3837900	3839669	.	-	.	transcript_id "Ledus.S2G052200.t1"; gene_id "Ledus.S2G052200"
Ledus.S2	AUGUSTUS	stop_codon	3837897	3837899	.	-	0	transcript_id "Ledus.S2G052200.t1"; gene_id "Ledus.S2G052200"
Ledus.S2	AUGUSTUS	CDS	3837900	3839669	0.99	-	0	transcript_id "Ledus.S2G052200.t1"; gene_id "Ledus.S2G052200"
Ledus.S2	AUGUSTUS	exon	3837900	3839669	.	-	.	transcript_id "Ledus.S2G052200.t1"; gene_id "Ledus.S2G052200"
Ledus.S2	AUGUSTUS	start_codon	3839667	3839669	.	-	0	transcript_id "Ledus.S2G052200.t1"; gene_id "Ledus.S2G052200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1309.t1 is derived from g8170.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9213069	9213878	.	-	.	Ledus.S2G119100
Ledus.S2	AUGUSTUS	transcript	9213069	9213878	.	-	.	transcript_id "Ledus.S2G119100.t1"; gene_id "Ledus.S2G119100"
Ledus.S2	AUGUSTUS	stop_codon	9213066	9213068	.	-	0	transcript_id "Ledus.S2G119100.t1"; gene_id "Ledus.S2G119100"
Ledus.S2	AUGUSTUS	CDS	9213069	9213230	1	-	0	transcript_id "Ledus.S2G119100.t1"; gene_id "Ledus.S2G119100"
Ledus.S2	AUGUSTUS	exon	9213069	9213230	.	-	.	transcript_id "Ledus.S2G119100.t1"; gene_id "Ledus.S2G119100"
Ledus.S2	AUGUSTUS	intron	9213231	9213351	.	-	.	transcript_id "Ledus.S2G119100.t1"; gene_id "Ledus.S2G119100"
Ledus.S2	AUGUSTUS	CDS	9213352	9213410	1	-	2	transcript_id "Ledus.S2G119100.t1"; gene_id "Ledus.S2G119100"
Ledus.S2	AUGUSTUS	exon	9213352	9213410	.	-	.	transcript_id "Ledus.S2G119100.t1"; gene_id "Ledus.S2G119100"
Ledus.S2	AUGUSTUS	intron	9213411	9213595	.	-	.	transcript_id "Ledus.S2G119100.t1"; gene_id "Ledus.S2G119100"
Ledus.S2	AUGUSTUS	CDS	9213596	9213878	0.97	-	0	transcript_id "Ledus.S2G119100.t1"; gene_id "Ledus.S2G119100"
Ledus.S2	AUGUSTUS	exon	9213596	9213878	.	-	.	transcript_id "Ledus.S2G119100.t1"; gene_id "Ledus.S2G119100"
Ledus.S2	AUGUSTUS	start_codon	9213876	9213878	.	-	0	transcript_id "Ledus.S2G119100.t1"; gene_id "Ledus.S2G119100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9971.t1 is derived from g11001.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11621041	11622388	.	+	.	Ledus.S3G144800
Ledus.S3	AUGUSTUS	transcript	11621041	11622388	.	+	.	transcript_id "Ledus.S3G144800.t1"; gene_id "Ledus.S3G144800"
Ledus.S3	AUGUSTUS	start_codon	11621041	11621043	.	+	0	transcript_id "Ledus.S3G144800.t1"; gene_id "Ledus.S3G144800"
Ledus.S3	AUGUSTUS	CDS	11621041	11622023	0.74	+	0	transcript_id "Ledus.S3G144800.t1"; gene_id "Ledus.S3G144800"
Ledus.S3	AUGUSTUS	exon	11621041	11622023	.	+	.	transcript_id "Ledus.S3G144800.t1"; gene_id "Ledus.S3G144800"
Ledus.S3	AUGUSTUS	intron	11622024	11622130	.	+	.	transcript_id "Ledus.S3G144800.t1"; gene_id "Ledus.S3G144800"
Ledus.S3	AUGUSTUS	CDS	11622131	11622193	0.81	+	1	transcript_id "Ledus.S3G144800.t1"; gene_id "Ledus.S3G144800"
Ledus.S3	AUGUSTUS	exon	11622131	11622193	.	+	.	transcript_id "Ledus.S3G144800.t1"; gene_id "Ledus.S3G144800"
Ledus.S3	AUGUSTUS	intron	11622194	11622345	.	+	.	transcript_id "Ledus.S3G144800.t1"; gene_id "Ledus.S3G144800"
Ledus.S3	AUGUSTUS	CDS	11622346	11622388	0.93	+	1	transcript_id "Ledus.S3G144800.t1"; gene_id "Ledus.S3G144800"
Ledus.S3	AUGUSTUS	exon	11622346	11622388	.	+	.	transcript_id "Ledus.S3G144800.t1"; gene_id "Ledus.S3G144800"
Ledus.S3	AUGUSTUS	stop_codon	11622389	11622391	.	+	0	transcript_id "Ledus.S3G144800.t1"; gene_id "Ledus.S3G144800"
# This transcript jg8999.t2 is derived from g10029.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9000.t1 is derived from g10030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3787657	3788001	.	-	.	Ledus.S3G047700
Ledus.S3	AUGUSTUS	transcript	3787657	3788001	.	-	.	transcript_id "Ledus.S3G047700.t1"; gene_id "Ledus.S3G047700"
Ledus.S3	AUGUSTUS	stop_codon	3787654	3787656	.	-	0	transcript_id "Ledus.S3G047700.t1"; gene_id "Ledus.S3G047700"
Ledus.S3	AUGUSTUS	CDS	3787657	3788001	0.64	-	0	transcript_id "Ledus.S3G047700.t1"; gene_id "Ledus.S3G047700"
Ledus.S3	AUGUSTUS	exon	3787657	3788001	.	-	.	transcript_id "Ledus.S3G047700.t1"; gene_id "Ledus.S3G047700"
Ledus.S3	AUGUSTUS	start_codon	3787999	3788001	.	-	0	transcript_id "Ledus.S3G047700.t1"; gene_id "Ledus.S3G047700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10081.t1 is derived from g11111.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12555162	12558079	.	+	.	Ledus.S3G155800
Ledus.S3	AUGUSTUS	transcript	12555162	12558079	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	start_codon	12555162	12555164	.	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12555162	12555224	0.97	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12555162	12555224	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12555225	12555428	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12555429	12555656	0.88	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12555429	12555656	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12555657	12555786	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12555787	12555811	1	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12555787	12555811	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12555812	12555949	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12555950	12556062	1	+	2	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12555950	12556062	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12556063	12556139	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12556140	12556226	1	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12556140	12556226	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12556227	12556378	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12556379	12556495	1	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12556379	12556495	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12556496	12556573	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12556574	12556662	1	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12556574	12556662	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12556663	12556760	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12556761	12556812	0.95	+	1	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12556761	12556812	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12556813	12556927	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12556928	12557023	1	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12556928	12557023	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12557024	12557161	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12557162	12557206	1	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12557162	12557206	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12557207	12557313	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12557314	12557403	1	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12557314	12557403	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12557404	12557489	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12557490	12557561	1	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12557490	12557561	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12557562	12557865	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12557866	12557946	1	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12557866	12557946	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	intron	12557947	12558034	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	CDS	12558035	12558079	1	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	exon	12558035	12558079	.	+	.	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
Ledus.S3	AUGUSTUS	stop_codon	12558080	12558082	.	+	0	transcript_id "Ledus.S3G155800.t1"; gene_id "Ledus.S3G155800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1563.t1 is derived from g8424.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10967423	10968442	.	-	.	Ledus.S2G144500
Ledus.S2	AUGUSTUS	transcript	10967423	10968442	.	-	.	transcript_id "Ledus.S2G144500.t1"; gene_id "Ledus.S2G144500"
Ledus.S2	AUGUSTUS	stop_codon	10967420	10967422	.	-	0	transcript_id "Ledus.S2G144500.t1"; gene_id "Ledus.S2G144500"
Ledus.S2	AUGUSTUS	CDS	10967423	10968442	1	-	0	transcript_id "Ledus.S2G144500.t1"; gene_id "Ledus.S2G144500"
Ledus.S2	AUGUSTUS	exon	10967423	10968442	.	-	.	transcript_id "Ledus.S2G144500.t1"; gene_id "Ledus.S2G144500"
Ledus.S2	AUGUSTUS	start_codon	10968440	10968442	.	-	0	transcript_id "Ledus.S2G144500.t1"; gene_id "Ledus.S2G144500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2620.t1 is derived from g53.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	591946	594572	.	-	.	Ledus.S1G004100
Ledus.S1	AUGUSTUS	transcript	591946	594572	.	-	.	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	stop_codon	591943	591945	.	-	0	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	CDS	591946	592467	1	-	0	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	exon	591946	592467	.	-	.	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	intron	592468	592545	.	-	.	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	CDS	592546	593751	1	-	0	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	exon	592546	593751	.	-	.	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	intron	593752	593844	.	-	.	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	CDS	593845	593914	1	-	1	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	exon	593845	593914	.	-	.	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	intron	593915	594022	.	-	.	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	CDS	594023	594164	0.86	-	2	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	exon	594023	594164	.	-	.	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	intron	594165	594400	.	-	.	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	CDS	594401	594572	0.67	-	0	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	exon	594401	594572	.	-	.	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
Ledus.S1	AUGUSTUS	start_codon	594570	594572	.	-	0	transcript_id "Ledus.S1G004100.t1"; gene_id "Ledus.S1G004100"
# This transcript jg4482.t2 is derived from g1918.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4482.t3 is derived from g1918.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4483.t1 is derived from g1919.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17280522	17281141	.	-	.	Ledus.S1G190400
Ledus.S1	AUGUSTUS	transcript	17280522	17281141	.	-	.	transcript_id "Ledus.S1G190400.t1"; gene_id "Ledus.S1G190400"
Ledus.S1	AUGUSTUS	stop_codon	17280519	17280521	.	-	0	transcript_id "Ledus.S1G190400.t1"; gene_id "Ledus.S1G190400"
Ledus.S1	AUGUSTUS	CDS	17280522	17280538	0.98	-	2	transcript_id "Ledus.S1G190400.t1"; gene_id "Ledus.S1G190400"
Ledus.S1	AUGUSTUS	exon	17280522	17280538	.	-	.	transcript_id "Ledus.S1G190400.t1"; gene_id "Ledus.S1G190400"
Ledus.S1	AUGUSTUS	intron	17280539	17280634	.	-	.	transcript_id "Ledus.S1G190400.t1"; gene_id "Ledus.S1G190400"
Ledus.S1	AUGUSTUS	CDS	17280635	17280756	1	-	1	transcript_id "Ledus.S1G190400.t1"; gene_id "Ledus.S1G190400"
Ledus.S1	AUGUSTUS	exon	17280635	17280756	.	-	.	transcript_id "Ledus.S1G190400.t1"; gene_id "Ledus.S1G190400"
Ledus.S1	AUGUSTUS	intron	17280757	17280845	.	-	.	transcript_id "Ledus.S1G190400.t1"; gene_id "Ledus.S1G190400"
Ledus.S1	AUGUSTUS	CDS	17280846	17281141	1	-	0	transcript_id "Ledus.S1G190400.t1"; gene_id "Ledus.S1G190400"
Ledus.S1	AUGUSTUS	exon	17280846	17281141	.	-	.	transcript_id "Ledus.S1G190400.t1"; gene_id "Ledus.S1G190400"
Ledus.S1	AUGUSTUS	start_codon	17281139	17281141	.	-	0	transcript_id "Ledus.S1G190400.t1"; gene_id "Ledus.S1G190400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2714.t1 is derived from g147.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2464041	2465257	.	-	.	Ledus.S1G013500
Ledus.S1	AUGUSTUS	transcript	2464041	2465257	.	-	.	transcript_id "Ledus.S1G013500.t1"; gene_id "Ledus.S1G013500"
Ledus.S1	AUGUSTUS	stop_codon	2464038	2464040	.	-	0	transcript_id "Ledus.S1G013500.t1"; gene_id "Ledus.S1G013500"
Ledus.S1	AUGUSTUS	CDS	2464041	2464187	0.38	-	0	transcript_id "Ledus.S1G013500.t1"; gene_id "Ledus.S1G013500"
Ledus.S1	AUGUSTUS	exon	2464041	2464187	.	-	.	transcript_id "Ledus.S1G013500.t1"; gene_id "Ledus.S1G013500"
Ledus.S1	AUGUSTUS	intron	2464188	2464417	.	-	.	transcript_id "Ledus.S1G013500.t1"; gene_id "Ledus.S1G013500"
Ledus.S1	AUGUSTUS	CDS	2464418	2464655	0.42	-	1	transcript_id "Ledus.S1G013500.t1"; gene_id "Ledus.S1G013500"
Ledus.S1	AUGUSTUS	exon	2464418	2464655	.	-	.	transcript_id "Ledus.S1G013500.t1"; gene_id "Ledus.S1G013500"
Ledus.S1	AUGUSTUS	intron	2464656	2464964	.	-	.	transcript_id "Ledus.S1G013500.t1"; gene_id "Ledus.S1G013500"
Ledus.S1	AUGUSTUS	CDS	2464965	2465257	0.9	-	0	transcript_id "Ledus.S1G013500.t1"; gene_id "Ledus.S1G013500"
Ledus.S1	AUGUSTUS	exon	2464965	2465257	.	-	.	transcript_id "Ledus.S1G013500.t1"; gene_id "Ledus.S1G013500"
Ledus.S1	AUGUSTUS	start_codon	2465255	2465257	.	-	0	transcript_id "Ledus.S1G013500.t1"; gene_id "Ledus.S1G013500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7123.t1 is derived from g6654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1683992	1685841	.	-	.	Ledus.C7G018400
Ledus.C7	AUGUSTUS	transcript	1683992	1685841	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	stop_codon	1683989	1683991	.	-	0	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	CDS	1683992	1684033	0.98	-	0	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	exon	1683992	1684033	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	intron	1684034	1684136	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	CDS	1684137	1684219	0.97	-	2	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	exon	1684137	1684219	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	intron	1684220	1684340	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	CDS	1684341	1684419	1	-	0	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	exon	1684341	1684419	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	intron	1684420	1684515	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	CDS	1684516	1684610	1	-	2	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	exon	1684516	1684610	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	intron	1684611	1684700	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	CDS	1684701	1684833	1	-	0	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	exon	1684701	1684833	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	intron	1684834	1684933	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	CDS	1684934	1685018	1	-	1	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	exon	1684934	1685018	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	intron	1685019	1685151	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	CDS	1685152	1685275	1	-	2	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	exon	1685152	1685275	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	intron	1685276	1685397	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	CDS	1685398	1685473	1	-	0	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	exon	1685398	1685473	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	intron	1685474	1685607	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	CDS	1685608	1685715	1	-	0	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	exon	1685608	1685715	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	intron	1685716	1685808	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	CDS	1685809	1685841	0.99	-	0	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	exon	1685809	1685841	.	-	.	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
Ledus.C7	AUGUSTUS	start_codon	1685839	1685841	.	-	0	transcript_id "Ledus.C7G018400.t1"; gene_id "Ledus.C7G018400"
# This transcript jg3672.t2 is derived from g1108.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3673.t1 is derived from g1109.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10605049	10607585	.	-	.	Ledus.S1G109400
Ledus.S1	AUGUSTUS	transcript	10605049	10606842	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	stop_codon	10605046	10605048	.	-	0	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10605049	10605146	0.55	-	2	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10605049	10605146	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10605147	10605247	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10605248	10605275	0.58	-	0	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10605248	10605275	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10605276	10605562	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10605563	10605724	1	-	0	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10605563	10605724	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10605725	10605809	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10605810	10605983	0.88	-	0	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10605810	10605983	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10605984	10606211	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10606212	10606386	1	-	1	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10606212	10606386	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10606387	10606547	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10606548	10606634	1	-	1	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10606548	10606634	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10606635	10606717	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10606718	10606735	1	-	1	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10606718	10606735	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10606736	10606834	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10606835	10606842	1	-	0	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10606835	10606842	.	-	.	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	start_codon	10606840	10606842	.	-	0	transcript_id "Ledus.S1G109400.t1"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	transcript	10605049	10607585	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	stop_codon	10605046	10605048	.	-	0	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10605049	10605146	0.51	-	2	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10605049	10605146	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10605147	10605247	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10605248	10605275	0.52	-	0	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10605248	10605275	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10605276	10605562	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10605563	10605724	1	-	0	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10605563	10605724	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10605725	10605809	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10605810	10605983	0.93	-	0	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10605810	10605983	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10605984	10606211	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10606212	10606386	1	-	1	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10606212	10606386	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10606387	10606547	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10606548	10606735	1	-	0	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10606548	10606735	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	intron	10606736	10607486	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	CDS	10607487	10607585	0.81	-	0	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	exon	10607487	10607585	.	-	.	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
Ledus.S1	AUGUSTUS	start_codon	10607583	10607585	.	-	0	transcript_id "Ledus.S1G109400.t2"; gene_id "Ledus.S1G109400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12591.t1 is derived from g6213.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13025199	13026593	.	+	.	Ledus.S4G174700
Ledus.S4	AUGUSTUS	transcript	13025199	13026593	.	+	.	transcript_id "Ledus.S4G174700.t1"; gene_id "Ledus.S4G174700"
Ledus.S4	AUGUSTUS	start_codon	13025199	13025201	.	+	0	transcript_id "Ledus.S4G174700.t1"; gene_id "Ledus.S4G174700"
Ledus.S4	AUGUSTUS	CDS	13025199	13026593	0.54	+	0	transcript_id "Ledus.S4G174700.t1"; gene_id "Ledus.S4G174700"
Ledus.S4	AUGUSTUS	exon	13025199	13026593	.	+	.	transcript_id "Ledus.S4G174700.t1"; gene_id "Ledus.S4G174700"
Ledus.S4	AUGUSTUS	stop_codon	13026594	13026596	.	+	0	transcript_id "Ledus.S4G174700.t1"; gene_id "Ledus.S4G174700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg233.t1 is derived from g7094.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1019859	1020320	.	-	.	Ledus.S2G011500
Ledus.S2	AUGUSTUS	transcript	1019859	1020320	.	-	.	transcript_id "Ledus.S2G011500.t1"; gene_id "Ledus.S2G011500"
Ledus.S2	AUGUSTUS	stop_codon	1019856	1019858	.	-	0	transcript_id "Ledus.S2G011500.t1"; gene_id "Ledus.S2G011500"
Ledus.S2	AUGUSTUS	CDS	1019859	1019873	1	-	0	transcript_id "Ledus.S2G011500.t1"; gene_id "Ledus.S2G011500"
Ledus.S2	AUGUSTUS	exon	1019859	1019873	.	-	.	transcript_id "Ledus.S2G011500.t1"; gene_id "Ledus.S2G011500"
Ledus.S2	AUGUSTUS	intron	1019874	1019960	.	-	.	transcript_id "Ledus.S2G011500.t1"; gene_id "Ledus.S2G011500"
Ledus.S2	AUGUSTUS	CDS	1019961	1020091	1	-	2	transcript_id "Ledus.S2G011500.t1"; gene_id "Ledus.S2G011500"
Ledus.S2	AUGUSTUS	exon	1019961	1020091	.	-	.	transcript_id "Ledus.S2G011500.t1"; gene_id "Ledus.S2G011500"
Ledus.S2	AUGUSTUS	intron	1020092	1020226	.	-	.	transcript_id "Ledus.S2G011500.t1"; gene_id "Ledus.S2G011500"
Ledus.S2	AUGUSTUS	CDS	1020227	1020320	1	-	0	transcript_id "Ledus.S2G011500.t1"; gene_id "Ledus.S2G011500"
Ledus.S2	AUGUSTUS	exon	1020227	1020320	.	-	.	transcript_id "Ledus.S2G011500.t1"; gene_id "Ledus.S2G011500"
Ledus.S2	AUGUSTUS	start_codon	1020318	1020320	.	-	0	transcript_id "Ledus.S2G011500.t1"; gene_id "Ledus.S2G011500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4553.t1 is derived from g1990.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17656720	17657603	.	+	.	Ledus.S1G197400
Ledus.S1	AUGUSTUS	transcript	17656720	17657603	.	+	.	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	start_codon	17656720	17656722	.	+	0	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	CDS	17656720	17656740	1	+	0	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	exon	17656720	17656740	.	+	.	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	intron	17656741	17656883	.	+	.	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	CDS	17656884	17656937	1	+	0	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	exon	17656884	17656937	.	+	.	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	intron	17656938	17657285	.	+	.	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	CDS	17657286	17657298	1	+	0	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	exon	17657286	17657298	.	+	.	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	intron	17657299	17657448	.	+	.	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	CDS	17657449	17657603	0.94	+	2	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	exon	17657449	17657603	.	+	.	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
Ledus.S1	AUGUSTUS	stop_codon	17657604	17657606	.	+	0	transcript_id "Ledus.S1G197400.t1"; gene_id "Ledus.S1G197400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6463.t1 is derived from g3906.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31379817	31380509	.	-	.	Ledus.S1G388400
Ledus.S1	AUGUSTUS	transcript	31379817	31380509	.	-	.	transcript_id "Ledus.S1G388400.t1"; gene_id "Ledus.S1G388400"
Ledus.S1	AUGUSTUS	stop_codon	31379814	31379816	.	-	0	transcript_id "Ledus.S1G388400.t1"; gene_id "Ledus.S1G388400"
Ledus.S1	AUGUSTUS	CDS	31379817	31380509	0.94	-	0	transcript_id "Ledus.S1G388400.t1"; gene_id "Ledus.S1G388400"
Ledus.S1	AUGUSTUS	exon	31379817	31380509	.	-	.	transcript_id "Ledus.S1G388400.t1"; gene_id "Ledus.S1G388400"
Ledus.S1	AUGUSTUS	start_codon	31380507	31380509	.	-	0	transcript_id "Ledus.S1G388400.t1"; gene_id "Ledus.S1G388400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4080.t1 is derived from g1516.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14514078	14516652	.	+	.	Ledus.S1G150100
Ledus.S1	AUGUSTUS	transcript	14514078	14516652	.	+	.	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	start_codon	14514078	14514080	.	+	0	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	CDS	14514078	14514146	0.91	+	0	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	exon	14514078	14514146	.	+	.	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	intron	14514147	14514257	.	+	.	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	CDS	14514258	14514340	1	+	0	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	exon	14514258	14514340	.	+	.	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	intron	14514341	14514459	.	+	.	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	CDS	14514460	14514538	1	+	1	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	exon	14514460	14514538	.	+	.	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	intron	14514539	14514668	.	+	.	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	CDS	14514669	14515238	1	+	0	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	exon	14514669	14515238	.	+	.	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	intron	14515239	14515375	.	+	.	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	CDS	14515376	14515940	1	+	0	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	exon	14515376	14515940	.	+	.	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	intron	14515941	14516023	.	+	.	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	CDS	14516024	14516652	0.62	+	2	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	exon	14516024	14516652	.	+	.	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
Ledus.S1	AUGUSTUS	stop_codon	14516653	14516655	.	+	0	transcript_id "Ledus.S1G150100.t1"; gene_id "Ledus.S1G150100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3903.t1 is derived from g1339.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13504495	13514917	.	+	.	Ledus.S1G132400
Ledus.S1	AUGUSTUS	transcript	13504495	13514917	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	start_codon	13504495	13504497	.	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13504495	13505784	0.99	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13504495	13505784	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13505785	13505999	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13506000	13506071	1	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13506000	13506071	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13506072	13506228	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13506229	13506294	1	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13506229	13506294	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13506295	13506384	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13506385	13506456	1	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13506385	13506456	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13506457	13506600	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13506601	13506666	1	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13506601	13506666	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13506667	13506802	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13506803	13506865	0.99	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13506803	13506865	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13506866	13506985	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13506986	13507051	0.99	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13506986	13507051	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13507052	13507200	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13507201	13507300	1	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13507201	13507300	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13507301	13507490	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13507491	13507592	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13507491	13507592	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13507593	13507827	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13507828	13508057	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13507828	13508057	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13508058	13508206	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13508207	13508321	1	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13508207	13508321	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13508322	13508431	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13508432	13508552	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13508432	13508552	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13508553	13508815	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13508816	13508991	1	+	1	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13508816	13508991	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13508992	13509071	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13509072	13509207	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13509072	13509207	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13509208	13509395	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13509396	13509496	1	+	1	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13509396	13509496	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13509497	13509620	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13509621	13509668	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13509621	13509668	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13509669	13509893	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13509894	13510078	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13509894	13510078	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13510079	13510286	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13510287	13510404	1	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13510287	13510404	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13510405	13510575	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13510576	13510703	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13510576	13510703	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13510704	13510795	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13510796	13510964	1	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13510796	13510964	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13510965	13511070	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13511071	13511189	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13511071	13511189	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13511190	13511273	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13511274	13511442	1	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13511274	13511442	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13511443	13511572	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13511573	13511657	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13511573	13511657	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13511658	13511822	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13511823	13511896	1	+	1	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13511823	13511896	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13511897	13511987	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13511988	13512107	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13511988	13512107	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13512108	13512200	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13512201	13512378	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13512201	13512378	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13512379	13512468	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13512469	13512590	1	+	1	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13512469	13512590	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13512591	13512669	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13512670	13512877	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13512670	13512877	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13512878	13513053	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13513054	13513127	0.97	+	1	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13513054	13513127	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13513128	13513232	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13513233	13513371	0.98	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13513233	13513371	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13513372	13513463	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13513464	13513636	0.95	+	1	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13513464	13513636	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13513637	13513724	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13513725	13513880	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13513725	13513880	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13513881	13513979	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13513980	13514111	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13513980	13514111	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13514112	13514210	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13514211	13514269	1	+	2	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13514211	13514269	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13514270	13514354	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13514355	13514387	1	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13514355	13514387	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13514388	13514527	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13514528	13514665	1	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13514528	13514665	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	intron	13514666	13514749	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	CDS	13514750	13514917	1	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	exon	13514750	13514917	.	+	.	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
Ledus.S1	AUGUSTUS	stop_codon	13514918	13514920	.	+	0	transcript_id "Ledus.S1G132400.t1"; gene_id "Ledus.S1G132400"
# This transcript jg2369.t2 is derived from g9232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2369.t3 is derived from g9232.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2369.t4 is derived from g9232.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2370.t1 is derived from g9233.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17644000	17650834	.	+	.	Ledus.S2G225200
Ledus.S2	AUGUSTUS	transcript	17644000	17650834	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	start_codon	17644000	17644002	.	+	0	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17644000	17645512	0.98	+	0	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17644000	17645512	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17645513	17645605	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17645606	17645696	1	+	2	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17645606	17645696	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17645697	17645812	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17645813	17646590	0.99	+	1	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17645813	17646590	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17646591	17646695	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17646696	17647538	0.97	+	0	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17646696	17647538	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17647539	17647621	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17647622	17647701	1	+	0	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17647622	17647701	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17647702	17647807	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17647808	17647892	1	+	1	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17647808	17647892	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17647893	17647985	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17647986	17648077	1	+	0	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17647986	17648077	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17648078	17648215	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17648216	17648284	1	+	1	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17648216	17648284	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17648285	17648380	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17648381	17648417	1	+	1	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17648381	17648417	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17648418	17648522	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17648523	17648602	1	+	0	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17648523	17648602	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17648603	17648753	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17648754	17649428	0.99	+	1	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17648754	17649428	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17649429	17649540	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17649541	17649583	1	+	1	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17649541	17649583	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17649584	17649669	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17649670	17649727	1	+	0	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17649670	17649727	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17649728	17649834	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17649835	17649938	1	+	2	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17649835	17649938	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17649939	17650074	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17650075	17650140	1	+	0	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17650075	17650140	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17650141	17650226	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17650227	17650341	1	+	0	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17650227	17650341	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17650342	17650466	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17650467	17650505	1	+	2	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17650467	17650505	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	intron	17650506	17650676	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	CDS	17650677	17650834	0.82	+	2	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	exon	17650677	17650834	.	+	.	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
Ledus.S2	AUGUSTUS	stop_codon	17650835	17650837	.	+	0	transcript_id "Ledus.S2G225200.t1"; gene_id "Ledus.S2G225200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8119.t1 is derived from g12790.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9213672	9214674	.	+	.	Ledus.S5G089700
Ledus.S5	AUGUSTUS	transcript	9213672	9214674	.	+	.	transcript_id "Ledus.S5G089700.t1"; gene_id "Ledus.S5G089700"
Ledus.S5	AUGUSTUS	start_codon	9213672	9213674	.	+	0	transcript_id "Ledus.S5G089700.t1"; gene_id "Ledus.S5G089700"
Ledus.S5	AUGUSTUS	CDS	9213672	9213923	0.95	+	0	transcript_id "Ledus.S5G089700.t1"; gene_id "Ledus.S5G089700"
Ledus.S5	AUGUSTUS	exon	9213672	9213923	.	+	.	transcript_id "Ledus.S5G089700.t1"; gene_id "Ledus.S5G089700"
Ledus.S5	AUGUSTUS	intron	9213924	9214286	.	+	.	transcript_id "Ledus.S5G089700.t1"; gene_id "Ledus.S5G089700"
Ledus.S5	AUGUSTUS	CDS	9214287	9214427	1	+	0	transcript_id "Ledus.S5G089700.t1"; gene_id "Ledus.S5G089700"
Ledus.S5	AUGUSTUS	exon	9214287	9214427	.	+	.	transcript_id "Ledus.S5G089700.t1"; gene_id "Ledus.S5G089700"
Ledus.S5	AUGUSTUS	intron	9214428	9214590	.	+	.	transcript_id "Ledus.S5G089700.t1"; gene_id "Ledus.S5G089700"
Ledus.S5	AUGUSTUS	CDS	9214591	9214674	1	+	0	transcript_id "Ledus.S5G089700.t1"; gene_id "Ledus.S5G089700"
Ledus.S5	AUGUSTUS	exon	9214591	9214674	.	+	.	transcript_id "Ledus.S5G089700.t1"; gene_id "Ledus.S5G089700"
Ledus.S5	AUGUSTUS	stop_codon	9214675	9214677	.	+	0	transcript_id "Ledus.S5G089700.t1"; gene_id "Ledus.S5G089700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1072.t1 is derived from g7933.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7250958	7256901	.	-	.	Ledus.S2G095400
Ledus.S2	AUGUSTUS	transcript	7250958	7256901	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	stop_codon	7250955	7250957	.	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7250958	7251043	1	-	2	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7250958	7251043	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7251044	7251138	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7251139	7251208	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7251139	7251208	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7251209	7251301	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7251302	7251382	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7251302	7251382	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7251383	7251475	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7251476	7251568	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7251476	7251568	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7251569	7251649	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7251650	7251730	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7251650	7251730	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7251731	7251862	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7251863	7251952	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7251863	7251952	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7251953	7252140	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7252141	7252234	1	-	1	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7252141	7252234	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7252235	7252337	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7252338	7252406	0.96	-	1	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7252338	7252406	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7252407	7252513	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7252514	7252584	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7252514	7252584	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7252585	7252677	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7252678	7252746	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7252678	7252746	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7252747	7252825	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7252826	7252909	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7252826	7252909	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7252910	7253224	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7253225	7253317	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7253225	7253317	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7253318	7253410	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7253411	7253518	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7253411	7253518	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7253519	7253632	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7253633	7253783	1	-	1	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7253633	7253783	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7253784	7254104	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7254105	7254499	0.69	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7254105	7254499	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7254500	7254615	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7254616	7254758	0.73	-	2	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7254616	7254758	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7254759	7254966	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7254967	7254985	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7254967	7254985	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7254986	7255071	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7255072	7255178	1	-	2	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7255072	7255178	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7255179	7255270	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7255271	7255362	1	-	1	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7255271	7255362	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7255363	7255442	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7255443	7255535	1	-	1	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7255443	7255535	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7255536	7255652	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7255653	7255705	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7255653	7255705	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7255706	7255794	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7255795	7255928	1	-	2	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7255795	7255928	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7255929	7256008	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7256009	7256091	1	-	1	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7256009	7256091	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7256092	7256175	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7256176	7256286	1	-	1	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7256176	7256286	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7256287	7256375	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7256376	7256470	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7256376	7256470	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	intron	7256471	7256550	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	CDS	7256551	7256901	1	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	exon	7256551	7256901	.	-	.	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
Ledus.S2	AUGUSTUS	start_codon	7256899	7256901	.	-	0	transcript_id "Ledus.S2G095400.t1"; gene_id "Ledus.S2G095400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11553.t1 is derived from g5171.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5250456	5253288	.	-	.	Ledus.S4G070900
Ledus.S4	AUGUSTUS	transcript	5250456	5253288	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	stop_codon	5250453	5250455	.	-	0	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	CDS	5250456	5250599	1	-	0	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	exon	5250456	5250599	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	intron	5250600	5250685	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	CDS	5250686	5250751	0.96	-	0	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	exon	5250686	5250751	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	intron	5250752	5250857	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	CDS	5250858	5250929	0.93	-	0	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	exon	5250858	5250929	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	intron	5250930	5251036	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	CDS	5251037	5251103	1	-	1	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	exon	5251037	5251103	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	intron	5251104	5251226	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	CDS	5251227	5251383	0.92	-	2	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	exon	5251227	5251383	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	intron	5251384	5251507	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	CDS	5251508	5251567	1	-	2	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	exon	5251508	5251567	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	intron	5251568	5251713	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	CDS	5251714	5251829	0.96	-	1	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	exon	5251714	5251829	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	intron	5251830	5251903	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	CDS	5251904	5251921	0.97	-	1	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	exon	5251904	5251921	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	intron	5251922	5252108	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	CDS	5252109	5252283	1	-	2	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	exon	5252109	5252283	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	intron	5252284	5252455	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	CDS	5252456	5252612	1	-	0	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	exon	5252456	5252612	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	intron	5252613	5252895	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	CDS	5252896	5253288	0.55	-	0	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	exon	5252896	5253288	.	-	.	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
Ledus.S4	AUGUSTUS	start_codon	5253286	5253288	.	-	0	transcript_id "Ledus.S4G070900.t1"; gene_id "Ledus.S4G070900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1682.t1 is derived from g8543.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11820409	11823669	.	+	.	Ledus.S2G156400
Ledus.S2	AUGUSTUS	transcript	11820409	11823669	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	start_codon	11820409	11820411	.	+	0	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11820409	11820411	0.99	+	0	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11820409	11820411	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11820412	11820493	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11820494	11820775	0.99	+	0	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11820494	11820775	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11820776	11820866	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11820867	11820968	1	+	0	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11820867	11820968	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11820969	11821048	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11821049	11821172	1	+	0	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11821049	11821172	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11821173	11821270	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11821271	11821347	1	+	2	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11821271	11821347	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11821348	11821434	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11821435	11821513	0.76	+	0	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11821435	11821513	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11821514	11821609	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11821610	11821816	0.94	+	2	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11821610	11821816	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11821817	11821966	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11821967	11822286	1	+	2	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11821967	11822286	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11822287	11822361	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11822362	11822491	1	+	0	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11822362	11822491	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11822492	11822566	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11822567	11822820	0.99	+	2	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11822567	11822820	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11822821	11822922	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11822923	11822956	1	+	0	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11822923	11822956	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11822957	11823032	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11823033	11823193	0.77	+	2	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11823033	11823193	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11823194	11823297	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11823298	11823408	0.78	+	0	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11823298	11823408	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	intron	11823409	11823507	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	CDS	11823508	11823669	0.66	+	0	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	exon	11823508	11823669	.	+	.	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
Ledus.S2	AUGUSTUS	stop_codon	11823670	11823672	.	+	0	transcript_id "Ledus.S2G156400.t1"; gene_id "Ledus.S2G156400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8653.t1 is derived from g9683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1136151	1136360	.	+	.	Ledus.S3G013000
Ledus.S3	AUGUSTUS	transcript	1136151	1136360	.	+	.	transcript_id "Ledus.S3G013000.t1"; gene_id "Ledus.S3G013000"
Ledus.S3	AUGUSTUS	start_codon	1136151	1136153	.	+	0	transcript_id "Ledus.S3G013000.t1"; gene_id "Ledus.S3G013000"
Ledus.S3	AUGUSTUS	CDS	1136151	1136360	0.41	+	0	transcript_id "Ledus.S3G013000.t1"; gene_id "Ledus.S3G013000"
Ledus.S3	AUGUSTUS	exon	1136151	1136360	.	+	.	transcript_id "Ledus.S3G013000.t1"; gene_id "Ledus.S3G013000"
Ledus.S3	AUGUSTUS	stop_codon	1136361	1136363	.	+	0	transcript_id "Ledus.S3G013000.t1"; gene_id "Ledus.S3G013000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12387.t1 is derived from g6008.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11583141	11585694	.	-	.	Ledus.S4G154300
Ledus.S4	AUGUSTUS	transcript	11583141	11585694	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	stop_codon	11583138	11583140	.	-	0	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11583141	11583180	0.98	-	1	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11583141	11583180	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11583181	11583338	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11583339	11583401	1	-	1	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11583339	11583401	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11583402	11583604	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11583605	11583710	1	-	2	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11583605	11583710	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11583711	11583893	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11583894	11583912	0.95	-	0	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11583894	11583912	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11583913	11584003	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11584004	11584031	0.95	-	1	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11584004	11584031	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11584032	11584174	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11584175	11584190	0.88	-	2	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11584175	11584190	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11584191	11584554	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11584555	11584563	0.89	-	2	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11584555	11584563	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11584564	11584829	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11584830	11584906	0.67	-	1	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11584830	11584906	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11584907	11585020	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11585021	11585030	0.92	-	2	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11585021	11585030	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11585031	11585160	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11585161	11585233	0.91	-	0	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11585161	11585233	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11585234	11585309	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11585310	11585326	0.92	-	2	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11585310	11585326	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11585327	11585492	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11585493	11585694	0.33	-	0	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11585493	11585694	.	-	.	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	start_codon	11585692	11585694	.	-	0	transcript_id "Ledus.S4G154300.t1"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	transcript	11583141	11585694	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	stop_codon	11583138	11583140	.	-	0	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11583141	11583180	0.98	-	1	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11583141	11583180	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11583181	11583338	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11583339	11583401	1	-	1	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11583339	11583401	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11583402	11583604	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11583605	11583710	1	-	2	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11583605	11583710	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11583711	11583893	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11583894	11583912	0.94	-	0	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11583894	11583912	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11583913	11584003	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11584004	11584031	0.94	-	1	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11584004	11584031	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11584032	11584174	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11584175	11584190	0.85	-	2	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11584175	11584190	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11584191	11584554	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11584555	11584563	0.85	-	2	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11584555	11584563	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11584564	11584829	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11584830	11584906	0.61	-	1	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11584830	11584906	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11584907	11585020	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11585021	11585030	0.8	-	2	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11585021	11585030	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11585031	11585160	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11585161	11585233	0.57	-	0	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11585161	11585233	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11585234	11585309	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11585310	11585326	0.58	-	2	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11585310	11585326	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11585327	11585508	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11585509	11585574	0.65	-	2	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11585509	11585574	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	intron	11585575	11585684	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	CDS	11585685	11585694	0.33	-	0	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	exon	11585685	11585694	.	-	.	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
Ledus.S4	AUGUSTUS	start_codon	11585692	11585694	.	-	0	transcript_id "Ledus.S4G154300.t2"; gene_id "Ledus.S4G154300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg331.t1 is derived from g7192.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1700555	1701777	.	-	.	Ledus.S2G021300
Ledus.S2	AUGUSTUS	transcript	1700555	1701777	.	-	.	transcript_id "Ledus.S2G021300.t1"; gene_id "Ledus.S2G021300"
Ledus.S2	AUGUSTUS	stop_codon	1700552	1700554	.	-	0	transcript_id "Ledus.S2G021300.t1"; gene_id "Ledus.S2G021300"
Ledus.S2	AUGUSTUS	CDS	1700555	1701181	0.67	-	0	transcript_id "Ledus.S2G021300.t1"; gene_id "Ledus.S2G021300"
Ledus.S2	AUGUSTUS	exon	1700555	1701181	.	-	.	transcript_id "Ledus.S2G021300.t1"; gene_id "Ledus.S2G021300"
Ledus.S2	AUGUSTUS	intron	1701182	1701258	.	-	.	transcript_id "Ledus.S2G021300.t1"; gene_id "Ledus.S2G021300"
Ledus.S2	AUGUSTUS	CDS	1701259	1701777	0.79	-	0	transcript_id "Ledus.S2G021300.t1"; gene_id "Ledus.S2G021300"
Ledus.S2	AUGUSTUS	exon	1701259	1701777	.	-	.	transcript_id "Ledus.S2G021300.t1"; gene_id "Ledus.S2G021300"
Ledus.S2	AUGUSTUS	start_codon	1701775	1701777	.	-	0	transcript_id "Ledus.S2G021300.t1"; gene_id "Ledus.S2G021300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5035.t1 is derived from g2474.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21230593	21238057	.	-	.	Ledus.S1G245600
Ledus.S1	AUGUSTUS	transcript	21230593	21238057	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	stop_codon	21230590	21230592	.	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21230593	21230754	0.67	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21230593	21230754	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21230755	21230851	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21230852	21231084	0.61	-	2	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21230852	21231084	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21231085	21231183	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21231184	21231522	1	-	2	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21231184	21231522	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21231523	21231670	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21231671	21231743	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21231671	21231743	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21231744	21231832	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21231833	21231934	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21231833	21231934	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21231935	21232079	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21232080	21232154	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21232080	21232154	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21232155	21232268	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21232269	21232382	0.99	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21232269	21232382	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21232383	21232471	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21232472	21232625	1	-	1	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21232472	21232625	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21232626	21232710	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21232711	21232778	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21232711	21232778	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21232779	21232904	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21232905	21232943	0.99	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21232905	21232943	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21232944	21233123	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21233124	21233177	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21233124	21233177	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21233178	21233259	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21233260	21233304	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21233260	21233304	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21233305	21233485	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21233486	21233558	1	-	1	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21233486	21233558	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21233559	21233682	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21233683	21233747	0.95	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21233683	21233747	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21233748	21233828	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21233829	21233945	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21233829	21233945	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21233946	21234045	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21234046	21234174	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21234046	21234174	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21234175	21234266	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21234267	21234399	0.91	-	1	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21234267	21234399	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21234400	21234503	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21234504	21234634	0.91	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21234504	21234634	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21234635	21234748	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21234749	21234821	1	-	1	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21234749	21234821	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21234822	21234910	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21234911	21235015	1	-	1	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21234911	21235015	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21235016	21235198	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21235199	21235392	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21235199	21235392	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21235393	21235524	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21235525	21235570	1	-	1	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21235525	21235570	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21235571	21235733	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21235734	21236026	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21235734	21236026	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21236027	21236130	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21236131	21236215	0.9	-	1	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21236131	21236215	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21236216	21236334	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21236335	21236431	0.9	-	2	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21236335	21236431	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21236432	21236526	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21236527	21236644	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21236527	21236644	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21236645	21236803	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21236804	21236878	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21236804	21236878	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21236879	21236971	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21236972	21237177	1	-	2	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21236972	21237177	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21237178	21237273	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21237274	21237365	1	-	1	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21237274	21237365	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21237366	21237488	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21237489	21237529	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21237489	21237529	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21237530	21237610	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21237611	21237703	1	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21237611	21237703	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21237704	21237776	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21237777	21237932	0.84	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21237777	21237932	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	intron	21237933	21238033	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	CDS	21238034	21238057	0.84	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	exon	21238034	21238057	.	-	.	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
Ledus.S1	AUGUSTUS	start_codon	21238055	21238057	.	-	0	transcript_id "Ledus.S1G245600.t1"; gene_id "Ledus.S1G245600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1035.t1 is derived from g7896.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6889335	6890560	.	-	.	Ledus.S2G091700
Ledus.S2	AUGUSTUS	transcript	6889335	6890560	.	-	.	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	stop_codon	6889332	6889334	.	-	0	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	CDS	6889335	6889393	0.66	-	2	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	exon	6889335	6889393	.	-	.	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	intron	6889394	6889472	.	-	.	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	CDS	6889473	6889592	1	-	2	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	exon	6889473	6889592	.	-	.	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	intron	6889593	6889673	.	-	.	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	CDS	6889674	6889796	1	-	2	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	exon	6889674	6889796	.	-	.	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	intron	6889797	6890523	.	-	.	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	CDS	6890524	6890560	1	-	0	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	exon	6890524	6890560	.	-	.	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
Ledus.S2	AUGUSTUS	start_codon	6890558	6890560	.	-	0	transcript_id "Ledus.S2G091700.t1"; gene_id "Ledus.S2G091700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10243.t1 is derived from g11273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13790467	13790664	.	-	.	Ledus.S3G172000
Ledus.S3	AUGUSTUS	transcript	13790467	13790664	.	-	.	transcript_id "Ledus.S3G172000.t1"; gene_id "Ledus.S3G172000"
Ledus.S3	AUGUSTUS	stop_codon	13790464	13790466	.	-	0	transcript_id "Ledus.S3G172000.t1"; gene_id "Ledus.S3G172000"
Ledus.S3	AUGUSTUS	CDS	13790467	13790664	0.81	-	0	transcript_id "Ledus.S3G172000.t1"; gene_id "Ledus.S3G172000"
Ledus.S3	AUGUSTUS	exon	13790467	13790664	.	-	.	transcript_id "Ledus.S3G172000.t1"; gene_id "Ledus.S3G172000"
Ledus.S3	AUGUSTUS	start_codon	13790662	13790664	.	-	0	transcript_id "Ledus.S3G172000.t1"; gene_id "Ledus.S3G172000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6674.t1 is derived from g4117.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33065654	33066112	.	+	.	Ledus.S1G409500
Ledus.S1	AUGUSTUS	transcript	33065654	33066112	.	+	.	transcript_id "Ledus.S1G409500.t1"; gene_id "Ledus.S1G409500"
Ledus.S1	AUGUSTUS	start_codon	33065654	33065656	.	+	0	transcript_id "Ledus.S1G409500.t1"; gene_id "Ledus.S1G409500"
Ledus.S1	AUGUSTUS	CDS	33065654	33066112	0.96	+	0	transcript_id "Ledus.S1G409500.t1"; gene_id "Ledus.S1G409500"
Ledus.S1	AUGUSTUS	exon	33065654	33066112	.	+	.	transcript_id "Ledus.S1G409500.t1"; gene_id "Ledus.S1G409500"
Ledus.S1	AUGUSTUS	stop_codon	33066113	33066115	.	+	0	transcript_id "Ledus.S1G409500.t1"; gene_id "Ledus.S1G409500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12113.t1 is derived from g5732.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9591737	9591943	.	-	.	Ledus.S4G126900
Ledus.S4	AUGUSTUS	transcript	9591737	9591943	.	-	.	transcript_id "Ledus.S4G126900.t1"; gene_id "Ledus.S4G126900"
Ledus.S4	AUGUSTUS	stop_codon	9591734	9591736	.	-	0	transcript_id "Ledus.S4G126900.t1"; gene_id "Ledus.S4G126900"
Ledus.S4	AUGUSTUS	CDS	9591737	9591943	0.53	-	0	transcript_id "Ledus.S4G126900.t1"; gene_id "Ledus.S4G126900"
Ledus.S4	AUGUSTUS	exon	9591737	9591943	.	-	.	transcript_id "Ledus.S4G126900.t1"; gene_id "Ledus.S4G126900"
Ledus.S4	AUGUSTUS	start_codon	9591941	9591943	.	-	0	transcript_id "Ledus.S4G126900.t1"; gene_id "Ledus.S4G126900"
# This transcript jg12069.t2 is derived from g5688.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12070.t1 is derived from g5689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9312271	9315542	.	-	.	Ledus.S4G122600
Ledus.S4	AUGUSTUS	transcript	9312271	9315542	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	stop_codon	9312268	9312270	.	-	0	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	CDS	9312271	9312384	0.86	-	0	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	exon	9312271	9312384	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	intron	9312385	9312485	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	CDS	9312486	9312552	1	-	1	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	exon	9312486	9312552	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	intron	9312553	9312714	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	CDS	9312715	9312854	1	-	0	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	exon	9312715	9312854	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	intron	9312855	9312971	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	CDS	9312972	9313064	1	-	0	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	exon	9312972	9313064	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	intron	9313065	9313156	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	CDS	9313157	9313339	1	-	0	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	exon	9313157	9313339	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	intron	9313340	9313449	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	CDS	9313450	9313554	1	-	0	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	exon	9313450	9313554	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	intron	9313555	9313696	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	CDS	9313697	9313777	1	-	0	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	exon	9313697	9313777	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	intron	9313778	9313873	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	CDS	9313874	9314015	1	-	1	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	exon	9313874	9314015	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	intron	9314016	9314172	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	CDS	9314173	9314252	1	-	0	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	exon	9314173	9314252	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	intron	9314253	9314417	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	CDS	9314418	9314530	1	-	2	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	exon	9314418	9314530	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	intron	9314531	9314687	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	CDS	9314688	9314934	1	-	0	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	exon	9314688	9314934	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	intron	9314935	9315137	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	CDS	9315138	9315542	0.52	-	0	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	exon	9315138	9315542	.	-	.	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
Ledus.S4	AUGUSTUS	start_codon	9315540	9315542	.	-	0	transcript_id "Ledus.S4G122600.t1"; gene_id "Ledus.S4G122600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 5 different transcripts
# This transcript jg2971.t1 is derived from g406.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5008940	5011551	.	+	.	Ledus.S1G039200
Ledus.S1	AUGUSTUS	transcript	5008968	5010146	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	start_codon	5008968	5008970	.	+	0	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5008968	5009060	1	+	0	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5008968	5009060	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009061	5009138	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009139	5009232	1	+	0	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009139	5009232	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009233	5009329	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009330	5009406	1	+	2	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009330	5009406	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009407	5009523	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009524	5009600	1	+	0	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009524	5009600	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009601	5009717	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009718	5009811	0.99	+	1	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009718	5009811	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009812	5009917	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009918	5010014	0.99	+	0	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009918	5010014	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010015	5010114	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010115	5010146	0.99	+	2	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010115	5010146	.	+	.	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	stop_codon	5010147	5010149	.	+	0	transcript_id "Ledus.S1G039200.t1"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	transcript	5008940	5010146	.	+	.	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	start_codon	5008940	5008942	.	+	0	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5008940	5009060	0.35	+	0	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5008940	5009060	.	+	.	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009061	5009329	.	+	.	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009330	5009406	1	+	2	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009330	5009406	.	+	.	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009407	5009523	.	+	.	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009524	5009600	1	+	0	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009524	5009600	.	+	.	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009601	5009717	.	+	.	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009718	5009811	1	+	1	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009718	5009811	.	+	.	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009812	5009917	.	+	.	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009918	5010014	1	+	0	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009918	5010014	.	+	.	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010015	5010114	.	+	.	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010115	5010146	0.98	+	2	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010115	5010146	.	+	.	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	stop_codon	5010147	5010149	.	+	0	transcript_id "Ledus.S1G039200.t2"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	transcript	5008968	5011551	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	start_codon	5008968	5008970	.	+	0	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5008968	5009060	1	+	0	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5008968	5009060	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009061	5009138	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009139	5009232	1	+	0	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009139	5009232	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009233	5009329	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009330	5009406	0.99	+	2	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009330	5009406	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009407	5009523	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009524	5009600	0.98	+	0	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009524	5009600	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009601	5009717	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009718	5009811	0.99	+	1	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009718	5009811	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5009812	5009917	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5009918	5010014	0.99	+	0	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5009918	5010014	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010015	5010257	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010258	5010331	1	+	2	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010258	5010331	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010332	5010421	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010422	5010532	1	+	0	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010422	5010532	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010533	5010642	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010643	5010714	1	+	0	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010643	5010714	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010715	5010802	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010803	5010823	0.93	+	0	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010803	5010823	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010824	5011111	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5011112	5011239	0.26	+	0	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5011112	5011239	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5011240	5011475	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5011476	5011551	0.99	+	1	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5011476	5011551	.	+	.	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	stop_codon	5011552	5011554	.	+	0	transcript_id "Ledus.S1G039200.t3"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	transcript	5010168	5011551	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	start_codon	5010168	5010170	.	+	0	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010168	5010171	1	+	0	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010168	5010171	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010172	5010257	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010258	5010331	1	+	2	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010258	5010331	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010332	5010421	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010422	5010532	1	+	0	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010422	5010532	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010533	5010642	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010643	5010714	1	+	0	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010643	5010714	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010715	5010802	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010803	5010823	0.96	+	0	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010803	5010823	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010824	5011111	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5011112	5011239	0.26	+	0	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5011112	5011239	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5011240	5011475	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5011476	5011551	0.92	+	1	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5011476	5011551	.	+	.	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	stop_codon	5011552	5011554	.	+	0	transcript_id "Ledus.S1G039200.t4"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	transcript	5010168	5011487	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	start_codon	5010168	5010170	.	+	0	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010168	5010171	0.99	+	0	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010168	5010171	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010172	5010257	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010258	5010331	1	+	2	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010258	5010331	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010332	5010421	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010422	5010532	0.99	+	0	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010422	5010532	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010533	5010642	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010643	5010714	0.99	+	0	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010643	5010714	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010715	5010802	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5010803	5010823	0.96	+	0	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5010803	5010823	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5010824	5011111	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5011112	5011234	0.49	+	0	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5011112	5011234	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	intron	5011235	5011475	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	CDS	5011476	5011487	0.7	+	0	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	exon	5011476	5011487	.	+	.	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
Ledus.S1	AUGUSTUS	stop_codon	5011488	5011490	.	+	0	transcript_id "Ledus.S1G039200.t5"; gene_id "Ledus.S1G039200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9894.t1 is derived from g10924.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10999975	11003607	.	-	.	Ledus.S3G137100
Ledus.S3	AUGUSTUS	transcript	10999975	11003607	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	stop_codon	10999972	10999974	.	-	0	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	10999975	11000103	1	-	0	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	10999975	11000103	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11000104	11000236	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11000237	11000365	1	-	0	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11000237	11000365	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11000366	11000521	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11000522	11000566	1	-	0	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11000522	11000566	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11000567	11000748	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11000749	11000865	1	-	0	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11000749	11000865	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11000866	11001050	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11001051	11001231	0.72	-	1	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11001051	11001231	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11001232	11001354	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11001355	11001443	1	-	0	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11001355	11001443	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11001444	11001569	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11001570	11001610	1	-	2	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11001570	11001610	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11001611	11001806	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11001807	11001925	1	-	1	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11001807	11001925	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11001926	11002015	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11002016	11002116	1	-	0	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11002016	11002116	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11002117	11002301	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11002302	11002367	1	-	0	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11002302	11002367	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11002368	11002498	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11002499	11002581	1	-	2	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11002499	11002581	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11002582	11002795	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11002796	11002907	1	-	0	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11002796	11002907	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11002908	11003161	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11003162	11003271	1	-	2	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11003162	11003271	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11003272	11003462	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11003463	11003607	0.96	-	0	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11003463	11003607	.	-	.	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	start_codon	11003605	11003607	.	-	0	transcript_id "Ledus.S3G137100.t1"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	transcript	10999975	11003607	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	stop_codon	10999972	10999974	.	-	0	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	10999975	11000103	0.99	-	0	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	10999975	11000103	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11000104	11000236	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11000237	11000365	1	-	0	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11000237	11000365	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11000366	11000521	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11000522	11000566	1	-	0	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11000522	11000566	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11000567	11000748	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11000749	11000865	1	-	0	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11000749	11000865	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11000866	11001050	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11001051	11001231	0.61	-	1	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11001051	11001231	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11001232	11001354	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11001355	11001443	1	-	0	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11001355	11001443	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11001444	11001569	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11001570	11001610	1	-	2	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11001570	11001610	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11001611	11001806	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11001807	11001925	1	-	1	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11001807	11001925	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11001926	11002015	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11002016	11002116	1	-	0	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11002016	11002116	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11002117	11002301	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11002302	11002367	1	-	0	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11002302	11002367	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11002368	11002498	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11002499	11002581	1	-	2	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11002499	11002581	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11002582	11002795	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11002796	11002907	1	-	0	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11002796	11002907	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11002908	11003161	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11003162	11003271	1	-	2	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11003162	11003271	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	intron	11003272	11003489	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	CDS	11003490	11003607	0.98	-	0	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	exon	11003490	11003607	.	-	.	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
Ledus.S3	AUGUSTUS	start_codon	11003605	11003607	.	-	0	transcript_id "Ledus.S3G137100.t2"; gene_id "Ledus.S3G137100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4350.t1 is derived from g1786.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16521936	16522310	.	+	.	Ledus.S1G177100
Ledus.S1	AUGUSTUS	transcript	16521936	16522310	.	+	.	transcript_id "Ledus.S1G177100.t1"; gene_id "Ledus.S1G177100"
Ledus.S1	AUGUSTUS	start_codon	16521936	16521938	.	+	0	transcript_id "Ledus.S1G177100.t1"; gene_id "Ledus.S1G177100"
Ledus.S1	AUGUSTUS	CDS	16521936	16522310	0.58	+	0	transcript_id "Ledus.S1G177100.t1"; gene_id "Ledus.S1G177100"
Ledus.S1	AUGUSTUS	exon	16521936	16522310	.	+	.	transcript_id "Ledus.S1G177100.t1"; gene_id "Ledus.S1G177100"
Ledus.S1	AUGUSTUS	stop_codon	16522311	16522313	.	+	0	transcript_id "Ledus.S1G177100.t1"; gene_id "Ledus.S1G177100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9890.t1 is derived from g10920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10981050	10982809	.	-	.	Ledus.S3G136700
Ledus.S3	AUGUSTUS	transcript	10981050	10982809	.	-	.	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	stop_codon	10981047	10981049	.	-	0	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	CDS	10981050	10981210	0.98	-	2	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	exon	10981050	10981210	.	-	.	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	intron	10981211	10981295	.	-	.	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	CDS	10981296	10981415	1	-	2	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	exon	10981296	10981415	.	-	.	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	intron	10981416	10981505	.	-	.	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	CDS	10981506	10981797	0.81	-	0	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	exon	10981506	10981797	.	-	.	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	intron	10981798	10981916	.	-	.	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	CDS	10981917	10982369	1	-	0	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	exon	10981917	10982369	.	-	.	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	intron	10982370	10982449	.	-	.	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	CDS	10982450	10982809	1	-	0	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	exon	10982450	10982809	.	-	.	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
Ledus.S3	AUGUSTUS	start_codon	10982807	10982809	.	-	0	transcript_id "Ledus.S3G136700.t1"; gene_id "Ledus.S3G136700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1097.t1 is derived from g7958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7508484	7510139	.	-	.	Ledus.S2G097900
Ledus.S2	AUGUSTUS	transcript	7508484	7510139	.	-	.	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	stop_codon	7508481	7508483	.	-	0	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	CDS	7508484	7508702	1	-	0	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	exon	7508484	7508702	.	-	.	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	intron	7508703	7508791	.	-	.	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	CDS	7508792	7508930	1	-	1	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	exon	7508792	7508930	.	-	.	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	intron	7508931	7509012	.	-	.	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	CDS	7509013	7509116	1	-	0	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	exon	7509013	7509116	.	-	.	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	intron	7509117	7509192	.	-	.	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	CDS	7509193	7509814	1	-	1	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	exon	7509193	7509814	.	-	.	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	intron	7509815	7509894	.	-	.	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	CDS	7509895	7510139	0.34	-	0	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	exon	7509895	7510139	.	-	.	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
Ledus.S2	AUGUSTUS	start_codon	7510137	7510139	.	-	0	transcript_id "Ledus.S2G097900.t1"; gene_id "Ledus.S2G097900"
# This transcript jg11530.t2 is derived from g5148.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11531.t1 is derived from g5149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5141808	5146560	.	+	.	Ledus.S4G068700
Ledus.S4	AUGUSTUS	transcript	5141808	5146560	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	start_codon	5141808	5141810	.	+	0	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5141808	5141873	0.79	+	0	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5141808	5141873	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5141874	5141961	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5141962	5142074	1	+	0	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5141962	5142074	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5142075	5142254	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5142255	5142463	1	+	1	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5142255	5142463	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5142464	5142648	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5142649	5142779	1	+	2	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5142649	5142779	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5142780	5142869	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5142870	5143108	0.6	+	0	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5142870	5143108	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5143109	5143223	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5143224	5143460	1	+	1	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5143224	5143460	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5143461	5143607	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5143608	5143762	1	+	1	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5143608	5143762	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5143763	5143995	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5143996	5144204	0.99	+	2	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5143996	5144204	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5144205	5144320	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5144321	5144489	1	+	0	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5144321	5144489	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5144490	5144735	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5144736	5144944	1	+	2	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5144736	5144944	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5144945	5145112	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5145113	5145175	1	+	0	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5145113	5145175	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5145176	5145331	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5145332	5145424	1	+	0	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5145332	5145424	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5145425	5145513	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5145514	5145713	1	+	0	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5145514	5145713	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5145714	5145805	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5145806	5145937	1	+	1	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5145806	5145937	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5145938	5146091	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5146092	5146175	1	+	1	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5146092	5146175	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5146176	5146282	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5146283	5146424	0.99	+	1	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5146283	5146424	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	intron	5146425	5146506	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	CDS	5146507	5146560	1	+	0	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	exon	5146507	5146560	.	+	.	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
Ledus.S4	AUGUSTUS	stop_codon	5146561	5146563	.	+	0	transcript_id "Ledus.S4G068700.t1"; gene_id "Ledus.S4G068700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7786.t1 is derived from g12457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6627101	6627397	.	-	.	Ledus.S5G056400
Ledus.S5	AUGUSTUS	transcript	6627101	6627397	.	-	.	transcript_id "Ledus.S5G056400.t1"; gene_id "Ledus.S5G056400"
Ledus.S5	AUGUSTUS	stop_codon	6627098	6627100	.	-	0	transcript_id "Ledus.S5G056400.t1"; gene_id "Ledus.S5G056400"
Ledus.S5	AUGUSTUS	CDS	6627101	6627397	0.95	-	0	transcript_id "Ledus.S5G056400.t1"; gene_id "Ledus.S5G056400"
Ledus.S5	AUGUSTUS	exon	6627101	6627397	.	-	.	transcript_id "Ledus.S5G056400.t1"; gene_id "Ledus.S5G056400"
Ledus.S5	AUGUSTUS	start_codon	6627395	6627397	.	-	0	transcript_id "Ledus.S5G056400.t1"; gene_id "Ledus.S5G056400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6388.t1 is derived from g3831.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30966127	30968153	.	-	.	Ledus.S1G380900
Ledus.S1	AUGUSTUS	transcript	30966127	30968153	.	-	.	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	stop_codon	30966124	30966126	.	-	0	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	CDS	30966127	30966129	1	-	0	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	exon	30966127	30966129	.	-	.	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	intron	30966130	30966214	.	-	.	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	CDS	30966215	30966292	1	-	0	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	exon	30966215	30966292	.	-	.	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	intron	30966293	30966370	.	-	.	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	CDS	30966371	30966499	1	-	0	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	exon	30966371	30966499	.	-	.	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	intron	30966500	30966790	.	-	.	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	CDS	30966791	30967935	1	-	2	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	exon	30966791	30967935	.	-	.	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	intron	30967936	30968023	.	-	.	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	CDS	30968024	30968153	0.69	-	0	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	exon	30968024	30968153	.	-	.	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
Ledus.S1	AUGUSTUS	start_codon	30968151	30968153	.	-	0	transcript_id "Ledus.S1G380900.t1"; gene_id "Ledus.S1G380900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg298.t1 is derived from g7159.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1473736	1479349	.	+	.	Ledus.S2G018000
Ledus.S2	AUGUSTUS	transcript	1473736	1479349	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	start_codon	1473736	1473738	.	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1473736	1473853	0.95	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1473736	1473853	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1473854	1474381	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1474382	1474461	1	+	2	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1474382	1474461	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1474462	1474594	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1474595	1474681	1	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1474595	1474681	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1474682	1474769	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1474770	1474820	1	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1474770	1474820	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1474821	1474904	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1474905	1475022	1	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1474905	1475022	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1475023	1475139	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1475140	1475196	1	+	2	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1475140	1475196	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1475197	1475286	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1475287	1475351	1	+	2	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1475287	1475351	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1475352	1475445	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1475446	1475529	1	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1475446	1475529	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1475530	1475630	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1475631	1475681	1	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1475631	1475681	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1475682	1475831	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1475832	1475894	0.93	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1475832	1475894	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1475895	1476014	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1476015	1476058	0.78	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1476015	1476058	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1476059	1476186	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1476187	1476256	0.97	+	1	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1476187	1476256	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1476257	1476388	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1476389	1476451	1	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1476389	1476451	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1476452	1476583	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1476584	1476673	1	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1476584	1476673	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1476674	1476804	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1476805	1476843	0.97	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1476805	1476843	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1476844	1476964	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1476965	1477114	1	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1476965	1477114	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1477115	1477217	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1477218	1477295	1	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1477218	1477295	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1477296	1477509	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1477510	1477595	0.97	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1477510	1477595	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1477596	1477696	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1477697	1477853	1	+	1	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1477697	1477853	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1477854	1477937	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1477938	1478031	0.99	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1477938	1478031	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1478032	1478145	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1478146	1478519	0.61	+	2	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1478146	1478519	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	intron	1478520	1478659	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	CDS	1478660	1479349	0.21	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	exon	1478660	1479349	.	+	.	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
Ledus.S2	AUGUSTUS	stop_codon	1479350	1479352	.	+	0	transcript_id "Ledus.S2G018000.t1"; gene_id "Ledus.S2G018000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4912.t1 is derived from g2350.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20605869	20606423	.	-	.	Ledus.S1G233300
Ledus.S1	AUGUSTUS	transcript	20605869	20606423	.	-	.	transcript_id "Ledus.S1G233300.t1"; gene_id "Ledus.S1G233300"
Ledus.S1	AUGUSTUS	stop_codon	20605866	20605868	.	-	0	transcript_id "Ledus.S1G233300.t1"; gene_id "Ledus.S1G233300"
Ledus.S1	AUGUSTUS	CDS	20605869	20606423	0.93	-	0	transcript_id "Ledus.S1G233300.t1"; gene_id "Ledus.S1G233300"
Ledus.S1	AUGUSTUS	exon	20605869	20606423	.	-	.	transcript_id "Ledus.S1G233300.t1"; gene_id "Ledus.S1G233300"
Ledus.S1	AUGUSTUS	start_codon	20606421	20606423	.	-	0	transcript_id "Ledus.S1G233300.t1"; gene_id "Ledus.S1G233300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1137.t1 is derived from g7998.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7867994	7875422	.	-	.	Ledus.S2G101900
Ledus.S2	AUGUSTUS	transcript	7867994	7875422	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	stop_codon	7867991	7867993	.	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7867994	7868628	1	-	2	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7867994	7868628	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7868629	7868725	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7868726	7868897	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7868726	7868897	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7868898	7868975	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7868976	7869071	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7868976	7869071	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7869072	7869209	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7869210	7869269	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7869210	7869269	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7869270	7869450	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7869451	7869540	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7869451	7869540	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7869541	7869712	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7869713	7869815	1	-	1	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7869713	7869815	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7869816	7870005	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7870006	7870089	1	-	1	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7870006	7870089	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7870090	7870302	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7870303	7870367	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7870303	7870367	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7870368	7870572	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7870573	7870680	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7870573	7870680	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7870681	7870876	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7870877	7870948	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7870877	7870948	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7870949	7871098	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7871099	7871158	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7871099	7871158	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7871159	7871243	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7871244	7871312	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7871244	7871312	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7871313	7871497	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7871498	7871581	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7871498	7871581	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7871582	7871676	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7871677	7871763	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7871677	7871763	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7871764	7871927	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7871928	7872020	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7871928	7872020	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7872021	7872234	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7872235	7872335	1	-	2	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7872235	7872335	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7872336	7872420	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7872421	7872530	1	-	1	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7872421	7872530	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7872531	7872760	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7872761	7872807	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7872761	7872807	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7872808	7873029	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7873030	7873116	1	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7873030	7873116	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7873117	7873290	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7873291	7873948	0.99	-	1	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7873291	7873948	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7873949	7874254	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7874255	7874679	0.99	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7874255	7874679	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	intron	7874680	7874984	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	CDS	7874985	7875422	0.68	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	exon	7874985	7875422	.	-	.	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
Ledus.S2	AUGUSTUS	start_codon	7875420	7875422	.	-	0	transcript_id "Ledus.S2G101900.t1"; gene_id "Ledus.S2G101900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12154.t1 is derived from g5773.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10032489	10035228	.	-	.	Ledus.S4G131000
Ledus.S4	AUGUSTUS	transcript	10032489	10035228	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	stop_codon	10032486	10032488	.	-	0	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	CDS	10032489	10033057	0.99	-	2	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	exon	10032489	10033057	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	intron	10033058	10033161	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	CDS	10033162	10033286	1	-	1	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	exon	10033162	10033286	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	intron	10033287	10033413	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	CDS	10033414	10033619	1	-	0	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	exon	10033414	10033619	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	intron	10033620	10033718	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	CDS	10033719	10033864	1	-	2	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	exon	10033719	10033864	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	intron	10033865	10034069	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	CDS	10034070	10034319	1	-	0	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	exon	10034070	10034319	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	intron	10034320	10034406	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	CDS	10034407	10034645	1	-	2	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	exon	10034407	10034645	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	intron	10034646	10034808	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	CDS	10034809	10035038	1	-	1	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	exon	10034809	10035038	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	intron	10035039	10035169	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	CDS	10035170	10035228	0.99	-	0	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	exon	10035170	10035228	.	-	.	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
Ledus.S4	AUGUSTUS	start_codon	10035226	10035228	.	-	0	transcript_id "Ledus.S4G131000.t1"; gene_id "Ledus.S4G131000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4032.t1 is derived from g1468.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14266348	14266641	.	+	.	Ledus.S1G145300
Ledus.S1	AUGUSTUS	transcript	14266348	14266641	.	+	.	transcript_id "Ledus.S1G145300.t1"; gene_id "Ledus.S1G145300"
Ledus.S1	AUGUSTUS	start_codon	14266348	14266350	.	+	0	transcript_id "Ledus.S1G145300.t1"; gene_id "Ledus.S1G145300"
Ledus.S1	AUGUSTUS	CDS	14266348	14266641	1	+	0	transcript_id "Ledus.S1G145300.t1"; gene_id "Ledus.S1G145300"
Ledus.S1	AUGUSTUS	exon	14266348	14266641	.	+	.	transcript_id "Ledus.S1G145300.t1"; gene_id "Ledus.S1G145300"
Ledus.S1	AUGUSTUS	stop_codon	14266642	14266644	.	+	0	transcript_id "Ledus.S1G145300.t1"; gene_id "Ledus.S1G145300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1461.t1 is derived from g8322.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10319921	10322587	.	-	.	Ledus.S2G134300
Ledus.S2	AUGUSTUS	transcript	10319921	10322587	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	stop_codon	10319918	10319920	.	-	0	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	CDS	10319921	10320049	1	-	0	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	exon	10319921	10320049	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	intron	10320050	10320135	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	CDS	10320136	10320612	0.73	-	0	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	exon	10320136	10320612	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	intron	10320613	10320719	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	CDS	10320720	10320812	1	-	0	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	exon	10320720	10320812	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	intron	10320813	10320893	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	CDS	10320894	10321067	1	-	0	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	exon	10320894	10321067	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	intron	10321068	10321157	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	CDS	10321158	10321196	1	-	0	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	exon	10321158	10321196	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	intron	10321197	10321291	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	CDS	10321292	10321369	1	-	0	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	exon	10321292	10321369	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	intron	10321370	10321492	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	CDS	10321493	10321770	1	-	2	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	exon	10321493	10321770	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	intron	10321771	10321912	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	CDS	10321913	10321955	1	-	0	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	exon	10321913	10321955	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	intron	10321956	10322099	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	CDS	10322100	10322283	1	-	1	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	exon	10322100	10322283	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	intron	10322284	10322374	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	CDS	10322375	10322453	1	-	2	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	exon	10322375	10322453	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	intron	10322454	10322547	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	CDS	10322548	10322587	1	-	0	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	exon	10322548	10322587	.	-	.	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
Ledus.S2	AUGUSTUS	start_codon	10322585	10322587	.	-	0	transcript_id "Ledus.S2G134300.t1"; gene_id "Ledus.S2G134300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6758.t1 is derived from g4201.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33803486	33804379	.	+	.	Ledus.S1G417900
Ledus.S1	AUGUSTUS	transcript	33803486	33804379	.	+	.	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	start_codon	33803486	33803488	.	+	0	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	CDS	33803486	33803744	0.83	+	0	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	exon	33803486	33803744	.	+	.	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	intron	33803745	33803883	.	+	.	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	CDS	33803884	33803988	0.81	+	2	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	exon	33803884	33803988	.	+	.	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	intron	33803989	33804068	.	+	.	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	CDS	33804069	33804187	0.57	+	2	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	exon	33804069	33804187	.	+	.	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	intron	33804188	33804325	.	+	.	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	CDS	33804326	33804379	0.49	+	0	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	exon	33804326	33804379	.	+	.	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
Ledus.S1	AUGUSTUS	stop_codon	33804380	33804382	.	+	0	transcript_id "Ledus.S1G417900.t1"; gene_id "Ledus.S1G417900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3256.t1 is derived from g691.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7147829	7149053	.	+	.	Ledus.S1G067700
Ledus.S1	AUGUSTUS	transcript	7147829	7149053	.	+	.	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	start_codon	7147829	7147831	.	+	0	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	CDS	7147829	7148034	0.52	+	0	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	exon	7147829	7148034	.	+	.	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	intron	7148035	7148112	.	+	.	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	CDS	7148113	7148351	1	+	1	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	exon	7148113	7148351	.	+	.	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	intron	7148352	7148445	.	+	.	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	CDS	7148446	7148501	1	+	2	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	exon	7148446	7148501	.	+	.	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	intron	7148502	7148580	.	+	.	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	CDS	7148581	7148631	1	+	0	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	exon	7148581	7148631	.	+	.	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	intron	7148632	7148774	.	+	.	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	CDS	7148775	7149053	0.59	+	0	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	exon	7148775	7149053	.	+	.	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
Ledus.S1	AUGUSTUS	stop_codon	7149054	7149056	.	+	0	transcript_id "Ledus.S1G067700.t1"; gene_id "Ledus.S1G067700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1596.t1 is derived from g8457.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11210382	11210711	.	-	.	Ledus.S2G147800
Ledus.S2	AUGUSTUS	transcript	11210382	11210711	.	-	.	transcript_id "Ledus.S2G147800.t1"; gene_id "Ledus.S2G147800"
Ledus.S2	AUGUSTUS	stop_codon	11210379	11210381	.	-	0	transcript_id "Ledus.S2G147800.t1"; gene_id "Ledus.S2G147800"
Ledus.S2	AUGUSTUS	CDS	11210382	11210711	0.79	-	0	transcript_id "Ledus.S2G147800.t1"; gene_id "Ledus.S2G147800"
Ledus.S2	AUGUSTUS	exon	11210382	11210711	.	-	.	transcript_id "Ledus.S2G147800.t1"; gene_id "Ledus.S2G147800"
Ledus.S2	AUGUSTUS	start_codon	11210709	11210711	.	-	0	transcript_id "Ledus.S2G147800.t1"; gene_id "Ledus.S2G147800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7756.t1 is derived from g12427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6067517	6072301	.	-	.	Ledus.S5G053400
Ledus.S5	AUGUSTUS	transcript	6067517	6072301	.	-	.	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	stop_codon	6067514	6067516	.	-	0	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	CDS	6067517	6067649	1	-	1	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	exon	6067517	6067649	.	-	.	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	intron	6067650	6067729	.	-	.	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	CDS	6067730	6067841	1	-	2	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	exon	6067730	6067841	.	-	.	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	intron	6067842	6067968	.	-	.	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	CDS	6067969	6070239	0.56	-	2	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	exon	6067969	6070239	.	-	.	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	intron	6070240	6070413	.	-	.	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	CDS	6070414	6071041	0.88	-	0	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	exon	6070414	6071041	.	-	.	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	intron	6071042	6071113	.	-	.	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	CDS	6071114	6072301	0.84	-	0	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	exon	6071114	6072301	.	-	.	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
Ledus.S5	AUGUSTUS	start_codon	6072299	6072301	.	-	0	transcript_id "Ledus.S5G053400.t1"; gene_id "Ledus.S5G053400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4148.t1 is derived from g1584.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14960552	14964246	.	-	.	Ledus.S1G156900
Ledus.S1	AUGUSTUS	transcript	14960552	14964246	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	stop_codon	14960549	14960551	.	-	0	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14960552	14960677	0.78	-	0	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14960552	14960677	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14960678	14960750	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14960751	14960960	1	-	0	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14960751	14960960	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14960961	14961039	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14961040	14961138	1	-	0	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14961040	14961138	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14961139	14961446	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14961447	14961572	1	-	0	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14961447	14961572	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14961573	14961666	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14961667	14961883	1	-	1	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14961667	14961883	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14961884	14961948	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14961949	14962043	1	-	0	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14961949	14962043	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14962044	14962108	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14962109	14962329	1	-	2	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14962109	14962329	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14962330	14962447	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14962448	14962521	1	-	1	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14962448	14962521	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14962522	14962592	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14962593	14962721	1	-	1	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14962593	14962721	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14962722	14962821	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14962822	14962862	1	-	0	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14962822	14962862	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14962863	14963022	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14963023	14963227	0.98	-	1	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14963023	14963227	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14963228	14963325	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14963326	14963576	1	-	0	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14963326	14963576	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14963577	14963698	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14963699	14963828	0.99	-	1	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14963699	14963828	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	intron	14963829	14963908	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	CDS	14963909	14964246	0.98	-	0	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	exon	14963909	14964246	.	-	.	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
Ledus.S1	AUGUSTUS	start_codon	14964244	14964246	.	-	0	transcript_id "Ledus.S1G156900.t1"; gene_id "Ledus.S1G156900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11910.t1 is derived from g5529.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7708229	7715660	.	+	.	Ledus.S4G106600
Ledus.S4	AUGUSTUS	transcript	7708229	7715660	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	start_codon	7708229	7708231	.	+	0	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7708229	7709254	0.8	+	0	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7708229	7709254	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7709255	7709333	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7709334	7709394	0.93	+	0	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7709334	7709394	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7709395	7709546	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7709547	7709649	0.96	+	2	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7709547	7709649	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7709650	7709723	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7709724	7709740	0.96	+	1	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7709724	7709740	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7709741	7709882	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7709883	7709962	0.94	+	2	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7709883	7709962	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7709963	7710105	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7710106	7710275	0.45	+	0	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7710106	7710275	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7710276	7710380	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7710381	7710457	0.88	+	1	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7710381	7710457	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7710458	7710636	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7710637	7711244	0.64	+	2	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7710637	7711244	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7711245	7711355	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7711356	7712701	0.92	+	0	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7711356	7712701	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7712702	7712815	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7712816	7712926	1	+	1	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7712816	7712926	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7712927	7713027	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7713028	7713304	0.96	+	1	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7713028	7713304	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7713305	7713381	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7713382	7713470	1	+	0	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7713382	7713470	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7713471	7713557	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7713558	7713666	0.98	+	1	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7713558	7713666	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7713667	7713780	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7713781	7713990	1	+	0	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7713781	7713990	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7713991	7714145	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7714146	7714271	1	+	0	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7714146	7714271	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7714272	7714349	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7714350	7714448	1	+	0	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7714350	7714448	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7714449	7714582	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7714583	7714774	0.96	+	0	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7714583	7714774	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	intron	7714775	7714883	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	CDS	7714884	7715660	0.76	+	0	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	exon	7714884	7715660	.	+	.	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
Ledus.S4	AUGUSTUS	stop_codon	7715661	7715663	.	+	0	transcript_id "Ledus.S4G106600.t1"; gene_id "Ledus.S4G106600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2660.t1 is derived from g93.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1320100	1321264	.	+	.	Ledus.S1G008100
Ledus.S1	AUGUSTUS	transcript	1320100	1321264	.	+	.	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	start_codon	1320100	1320102	.	+	0	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	CDS	1320100	1320107	0.98	+	0	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	exon	1320100	1320107	.	+	.	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	intron	1320108	1320286	.	+	.	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	CDS	1320287	1320379	1	+	1	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	exon	1320287	1320379	.	+	.	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	intron	1320380	1320469	.	+	.	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	CDS	1320470	1320527	1	+	1	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	exon	1320470	1320527	.	+	.	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	intron	1320528	1320618	.	+	.	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	CDS	1320619	1320624	0.97	+	0	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	exon	1320619	1320624	.	+	.	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	intron	1320625	1321011	.	+	.	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	CDS	1321012	1321068	0.96	+	0	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	exon	1321012	1321068	.	+	.	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	intron	1321069	1321168	.	+	.	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	CDS	1321169	1321264	0.98	+	0	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	exon	1321169	1321264	.	+	.	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	stop_codon	1321265	1321267	.	+	0	transcript_id "Ledus.S1G008100.t1"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	transcript	1320119	1321264	.	+	.	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	start_codon	1320119	1320121	.	+	0	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	CDS	1320119	1320201	0.72	+	0	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	exon	1320119	1320201	.	+	.	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	intron	1320202	1320286	.	+	.	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	CDS	1320287	1320379	1	+	1	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	exon	1320287	1320379	.	+	.	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	intron	1320380	1320469	.	+	.	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	CDS	1320470	1320527	1	+	1	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	exon	1320470	1320527	.	+	.	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	intron	1320528	1320618	.	+	.	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	CDS	1320619	1320624	0.96	+	0	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	exon	1320619	1320624	.	+	.	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	intron	1320625	1321011	.	+	.	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	CDS	1321012	1321068	0.99	+	0	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	exon	1321012	1321068	.	+	.	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	intron	1321069	1321168	.	+	.	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	CDS	1321169	1321264	0.98	+	0	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	exon	1321169	1321264	.	+	.	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
Ledus.S1	AUGUSTUS	stop_codon	1321265	1321267	.	+	0	transcript_id "Ledus.S1G008100.t2"; gene_id "Ledus.S1G008100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8304.t1 is derived from g12976.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10610066	10610461	.	-	.	Ledus.S5G108200
Ledus.S5	AUGUSTUS	transcript	10610066	10610461	.	-	.	transcript_id "Ledus.S5G108200.t1"; gene_id "Ledus.S5G108200"
Ledus.S5	AUGUSTUS	stop_codon	10610063	10610065	.	-	0	transcript_id "Ledus.S5G108200.t1"; gene_id "Ledus.S5G108200"
Ledus.S5	AUGUSTUS	CDS	10610066	10610461	0.35	-	0	transcript_id "Ledus.S5G108200.t1"; gene_id "Ledus.S5G108200"
Ledus.S5	AUGUSTUS	exon	10610066	10610461	.	-	.	transcript_id "Ledus.S5G108200.t1"; gene_id "Ledus.S5G108200"
Ledus.S5	AUGUSTUS	start_codon	10610459	10610461	.	-	0	transcript_id "Ledus.S5G108200.t1"; gene_id "Ledus.S5G108200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8162.t1 is derived from g12833.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9514497	9516101	.	-	.	Ledus.S5G094000
Ledus.S5	AUGUSTUS	transcript	9514497	9516101	.	-	.	transcript_id "Ledus.S5G094000.t1"; gene_id "Ledus.S5G094000"
Ledus.S5	AUGUSTUS	stop_codon	9514494	9514496	.	-	0	transcript_id "Ledus.S5G094000.t1"; gene_id "Ledus.S5G094000"
Ledus.S5	AUGUSTUS	CDS	9514497	9516101	0.97	-	0	transcript_id "Ledus.S5G094000.t1"; gene_id "Ledus.S5G094000"
Ledus.S5	AUGUSTUS	exon	9514497	9516101	.	-	.	transcript_id "Ledus.S5G094000.t1"; gene_id "Ledus.S5G094000"
Ledus.S5	AUGUSTUS	start_codon	9516099	9516101	.	-	0	transcript_id "Ledus.S5G094000.t1"; gene_id "Ledus.S5G094000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10505.t1 is derived from g11535.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15650075	15651666	.	-	.	Ledus.S3G198200
Ledus.S3	AUGUSTUS	transcript	15650075	15651666	.	-	.	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	stop_codon	15650072	15650074	.	-	0	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	CDS	15650075	15650474	0.97	-	1	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	exon	15650075	15650474	.	-	.	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	intron	15650475	15650583	.	-	.	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	CDS	15650584	15650855	0.69	-	0	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	exon	15650584	15650855	.	-	.	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	intron	15650856	15650949	.	-	.	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	CDS	15650950	15651100	0.81	-	1	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	exon	15650950	15651100	.	-	.	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	intron	15651101	15651321	.	-	.	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	CDS	15651322	15651382	0.97	-	2	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	exon	15651322	15651382	.	-	.	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	intron	15651383	15651599	.	-	.	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	CDS	15651600	15651666	0.93	-	0	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	exon	15651600	15651666	.	-	.	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	start_codon	15651664	15651666	.	-	0	transcript_id "Ledus.S3G198200.t1"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	transcript	15650075	15651666	.	-	.	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	stop_codon	15650072	15650074	.	-	0	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	CDS	15650075	15650474	0.99	-	1	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	exon	15650075	15650474	.	-	.	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	intron	15650475	15650583	.	-	.	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	CDS	15650584	15650855	0.84	-	0	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	exon	15650584	15650855	.	-	.	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	intron	15650856	15650949	.	-	.	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	CDS	15650950	15651164	0.66	-	2	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	exon	15650950	15651164	.	-	.	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	intron	15651165	15651362	.	-	.	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	CDS	15651363	15651382	0.66	-	1	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	exon	15651363	15651382	.	-	.	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	intron	15651383	15651613	.	-	.	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	CDS	15651614	15651666	0.97	-	0	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	exon	15651614	15651666	.	-	.	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
Ledus.S3	AUGUSTUS	start_codon	15651664	15651666	.	-	0	transcript_id "Ledus.S3G198200.t2"; gene_id "Ledus.S3G198200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8224.t1 is derived from g12895.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10021505	10022323	.	-	.	Ledus.S5G100200
Ledus.S5	AUGUSTUS	transcript	10021505	10022323	.	-	.	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	stop_codon	10021502	10021504	.	-	0	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	CDS	10021505	10021580	0.91	-	1	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	exon	10021505	10021580	.	-	.	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	intron	10021581	10021762	.	-	.	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	CDS	10021763	10021823	0.93	-	2	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	exon	10021763	10021823	.	-	.	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	intron	10021824	10022090	.	-	.	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	CDS	10022091	10022202	0.76	-	0	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	exon	10022091	10022202	.	-	.	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	intron	10022203	10022278	.	-	.	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	CDS	10022279	10022323	0.46	-	0	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	exon	10022279	10022323	.	-	.	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
Ledus.S5	AUGUSTUS	start_codon	10022321	10022323	.	-	0	transcript_id "Ledus.S5G100200.t1"; gene_id "Ledus.S5G100200"
# This transcript jg12276.t2 is derived from g5896.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12277.t1 is derived from g5897.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10819537	10822077	.	-	.	Ledus.S4G143300
Ledus.S4	AUGUSTUS	transcript	10819537	10822077	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	stop_codon	10819534	10819536	.	-	0	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	CDS	10819537	10819570	0.55	-	1	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	exon	10819537	10819570	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	intron	10819571	10819675	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	CDS	10819676	10819808	0.24	-	2	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	exon	10819676	10819808	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	intron	10819809	10819910	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	CDS	10819911	10819965	0.51	-	0	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	exon	10819911	10819965	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	intron	10819966	10820051	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	CDS	10820052	10820153	1	-	0	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	exon	10820052	10820153	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	intron	10820154	10820253	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	CDS	10820254	10820313	0.85	-	0	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	exon	10820254	10820313	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	intron	10820314	10820538	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	CDS	10820539	10820820	0.61	-	0	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	exon	10820539	10820820	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	intron	10820821	10820913	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	CDS	10820914	10821395	1	-	2	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	exon	10820914	10821395	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	intron	10821396	10821488	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	CDS	10821489	10821671	0.95	-	2	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	exon	10821489	10821671	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	intron	10821672	10821788	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	CDS	10821789	10822077	0.75	-	0	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	exon	10821789	10822077	.	-	.	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
Ledus.S4	AUGUSTUS	start_codon	10822075	10822077	.	-	0	transcript_id "Ledus.S4G143300.t1"; gene_id "Ledus.S4G143300"
# This transcript jg9356.t2 is derived from g10386.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg9356.t3 is derived from g10386.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9357.t1 is derived from g10387.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6346194	6347045	.	+	.	Ledus.S3G083400
Ledus.S3	AUGUSTUS	transcript	6346194	6347045	.	+	.	transcript_id "Ledus.S3G083400.t1"; gene_id "Ledus.S3G083400"
Ledus.S3	AUGUSTUS	start_codon	6346194	6346196	.	+	0	transcript_id "Ledus.S3G083400.t1"; gene_id "Ledus.S3G083400"
Ledus.S3	AUGUSTUS	CDS	6346194	6346337	0.76	+	0	transcript_id "Ledus.S3G083400.t1"; gene_id "Ledus.S3G083400"
Ledus.S3	AUGUSTUS	exon	6346194	6346337	.	+	.	transcript_id "Ledus.S3G083400.t1"; gene_id "Ledus.S3G083400"
Ledus.S3	AUGUSTUS	intron	6346338	6346543	.	+	.	transcript_id "Ledus.S3G083400.t1"; gene_id "Ledus.S3G083400"
Ledus.S3	AUGUSTUS	CDS	6346544	6346588	0.71	+	0	transcript_id "Ledus.S3G083400.t1"; gene_id "Ledus.S3G083400"
Ledus.S3	AUGUSTUS	exon	6346544	6346588	.	+	.	transcript_id "Ledus.S3G083400.t1"; gene_id "Ledus.S3G083400"
Ledus.S3	AUGUSTUS	intron	6346589	6346760	.	+	.	transcript_id "Ledus.S3G083400.t1"; gene_id "Ledus.S3G083400"
Ledus.S3	AUGUSTUS	CDS	6346761	6347045	0.59	+	0	transcript_id "Ledus.S3G083400.t1"; gene_id "Ledus.S3G083400"
Ledus.S3	AUGUSTUS	exon	6346761	6347045	.	+	.	transcript_id "Ledus.S3G083400.t1"; gene_id "Ledus.S3G083400"
Ledus.S3	AUGUSTUS	stop_codon	6347046	6347048	.	+	0	transcript_id "Ledus.S3G083400.t1"; gene_id "Ledus.S3G083400"
# This transcript jg3889.t2 is derived from g1325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3890.t1 is derived from g1326.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13425420	13426551	.	+	.	Ledus.S1G131100
Ledus.S1	AUGUSTUS	transcript	13425420	13426551	.	+	.	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	start_codon	13425420	13425422	.	+	0	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	CDS	13425420	13425695	0.89	+	0	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	exon	13425420	13425695	.	+	.	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	intron	13425696	13425775	.	+	.	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	CDS	13425776	13425833	0.99	+	0	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	exon	13425776	13425833	.	+	.	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	intron	13425834	13425935	.	+	.	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	CDS	13425936	13426154	0.99	+	2	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	exon	13425936	13426154	.	+	.	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	intron	13426155	13426265	.	+	.	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	CDS	13426266	13426390	1	+	2	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	exon	13426266	13426390	.	+	.	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	intron	13426391	13426485	.	+	.	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	CDS	13426486	13426551	0.54	+	0	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	exon	13426486	13426551	.	+	.	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
Ledus.S1	AUGUSTUS	stop_codon	13426552	13426554	.	+	0	transcript_id "Ledus.S1G131100.t1"; gene_id "Ledus.S1G131100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg621.t1 is derived from g7482.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3718805	3719737	.	-	.	Ledus.S2G050300
Ledus.S2	AUGUSTUS	transcript	3718805	3719737	.	-	.	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	stop_codon	3718802	3718804	.	-	0	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	CDS	3718805	3718856	1	-	1	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	exon	3718805	3718856	.	-	.	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	intron	3718857	3718934	.	-	.	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	CDS	3718935	3719052	1	-	2	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	exon	3718935	3719052	.	-	.	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	intron	3719053	3719145	.	-	.	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	CDS	3719146	3719193	1	-	2	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	exon	3719146	3719193	.	-	.	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	intron	3719194	3719282	.	-	.	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	CDS	3719283	3719313	1	-	0	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	exon	3719283	3719313	.	-	.	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	intron	3719314	3719408	.	-	.	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	CDS	3719409	3719501	1	-	0	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	exon	3719409	3719501	.	-	.	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	intron	3719502	3719677	.	-	.	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	CDS	3719678	3719737	0.91	-	0	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	exon	3719678	3719737	.	-	.	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
Ledus.S2	AUGUSTUS	start_codon	3719735	3719737	.	-	0	transcript_id "Ledus.S2G050300.t1"; gene_id "Ledus.S2G050300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10619.t1 is derived from g11649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16468784	16469573	.	-	.	Ledus.S3G209600
Ledus.S3	AUGUSTUS	transcript	16468784	16469573	.	-	.	transcript_id "Ledus.S3G209600.t1"; gene_id "Ledus.S3G209600"
Ledus.S3	AUGUSTUS	stop_codon	16468781	16468783	.	-	0	transcript_id "Ledus.S3G209600.t1"; gene_id "Ledus.S3G209600"
Ledus.S3	AUGUSTUS	CDS	16468784	16469200	1	-	0	transcript_id "Ledus.S3G209600.t1"; gene_id "Ledus.S3G209600"
Ledus.S3	AUGUSTUS	exon	16468784	16469200	.	-	.	transcript_id "Ledus.S3G209600.t1"; gene_id "Ledus.S3G209600"
Ledus.S3	AUGUSTUS	intron	16469201	16469276	.	-	.	transcript_id "Ledus.S3G209600.t1"; gene_id "Ledus.S3G209600"
Ledus.S3	AUGUSTUS	CDS	16469277	16469366	1	-	0	transcript_id "Ledus.S3G209600.t1"; gene_id "Ledus.S3G209600"
Ledus.S3	AUGUSTUS	exon	16469277	16469366	.	-	.	transcript_id "Ledus.S3G209600.t1"; gene_id "Ledus.S3G209600"
Ledus.S3	AUGUSTUS	intron	16469367	16469495	.	-	.	transcript_id "Ledus.S3G209600.t1"; gene_id "Ledus.S3G209600"
Ledus.S3	AUGUSTUS	CDS	16469496	16469573	0.98	-	0	transcript_id "Ledus.S3G209600.t1"; gene_id "Ledus.S3G209600"
Ledus.S3	AUGUSTUS	exon	16469496	16469573	.	-	.	transcript_id "Ledus.S3G209600.t1"; gene_id "Ledus.S3G209600"
Ledus.S3	AUGUSTUS	start_codon	16469571	16469573	.	-	0	transcript_id "Ledus.S3G209600.t1"; gene_id "Ledus.S3G209600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12305.t1 is derived from g5926.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11133208	11133661	.	-	.	Ledus.S4G146100
Ledus.S4	AUGUSTUS	transcript	11133208	11133661	.	-	.	transcript_id "Ledus.S4G146100.t1"; gene_id "Ledus.S4G146100"
Ledus.S4	AUGUSTUS	stop_codon	11133205	11133207	.	-	0	transcript_id "Ledus.S4G146100.t1"; gene_id "Ledus.S4G146100"
Ledus.S4	AUGUSTUS	CDS	11133208	11133424	0.56	-	1	transcript_id "Ledus.S4G146100.t1"; gene_id "Ledus.S4G146100"
Ledus.S4	AUGUSTUS	exon	11133208	11133424	.	-	.	transcript_id "Ledus.S4G146100.t1"; gene_id "Ledus.S4G146100"
Ledus.S4	AUGUSTUS	intron	11133425	11133518	.	-	.	transcript_id "Ledus.S4G146100.t1"; gene_id "Ledus.S4G146100"
Ledus.S4	AUGUSTUS	CDS	11133519	11133661	0.55	-	0	transcript_id "Ledus.S4G146100.t1"; gene_id "Ledus.S4G146100"
Ledus.S4	AUGUSTUS	exon	11133519	11133661	.	-	.	transcript_id "Ledus.S4G146100.t1"; gene_id "Ledus.S4G146100"
Ledus.S4	AUGUSTUS	start_codon	11133659	11133661	.	-	0	transcript_id "Ledus.S4G146100.t1"; gene_id "Ledus.S4G146100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3274.t1 is derived from g709.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7210754	7212304	.	+	.	Ledus.S1G069500
Ledus.S1	AUGUSTUS	transcript	7210754	7212304	.	+	.	transcript_id "Ledus.S1G069500.t1"; gene_id "Ledus.S1G069500"
Ledus.S1	AUGUSTUS	start_codon	7210754	7210756	.	+	0	transcript_id "Ledus.S1G069500.t1"; gene_id "Ledus.S1G069500"
Ledus.S1	AUGUSTUS	CDS	7210754	7210999	0.42	+	0	transcript_id "Ledus.S1G069500.t1"; gene_id "Ledus.S1G069500"
Ledus.S1	AUGUSTUS	exon	7210754	7210999	.	+	.	transcript_id "Ledus.S1G069500.t1"; gene_id "Ledus.S1G069500"
Ledus.S1	AUGUSTUS	intron	7211000	7211113	.	+	.	transcript_id "Ledus.S1G069500.t1"; gene_id "Ledus.S1G069500"
Ledus.S1	AUGUSTUS	CDS	7211114	7212304	0.42	+	0	transcript_id "Ledus.S1G069500.t1"; gene_id "Ledus.S1G069500"
Ledus.S1	AUGUSTUS	exon	7211114	7212304	.	+	.	transcript_id "Ledus.S1G069500.t1"; gene_id "Ledus.S1G069500"
Ledus.S1	AUGUSTUS	stop_codon	7212305	7212307	.	+	0	transcript_id "Ledus.S1G069500.t1"; gene_id "Ledus.S1G069500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg7317.t1 is derived from g11988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1146217	1149582	.	+	.	Ledus.S5G009500
Ledus.S5	AUGUSTUS	transcript	1146217	1147149	.	+	.	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	start_codon	1146217	1146219	.	+	0	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1146217	1146317	0.96	+	0	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1146217	1146317	.	+	.	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1146318	1146516	.	+	.	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1146517	1146628	0.86	+	1	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1146517	1146628	.	+	.	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1146629	1146731	.	+	.	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1146732	1146831	0.93	+	0	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1146732	1146831	.	+	.	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1146832	1146925	.	+	.	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1146926	1147149	0.84	+	2	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1146926	1147149	.	+	.	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	stop_codon	1147150	1147152	.	+	0	transcript_id "Ledus.S5G009500.t1"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	transcript	1146217	1149582	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	start_codon	1146217	1146219	.	+	0	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1146217	1146317	0.93	+	0	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1146217	1146317	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1146318	1146516	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1146517	1146628	0.86	+	1	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1146517	1146628	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1146629	1146731	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1146732	1146831	0.92	+	0	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1146732	1146831	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1146832	1146925	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1146926	1147123	0.96	+	2	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1146926	1147123	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1147124	1147206	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1147207	1147265	0.99	+	2	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1147207	1147265	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1147266	1147372	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1147373	1147447	0.9	+	0	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1147373	1147447	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1147448	1147592	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1147593	1148687	0.93	+	0	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1147593	1148687	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1148688	1148775	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1148776	1148834	0.35	+	0	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1148776	1148834	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1148835	1148972	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1148973	1149393	0.28	+	1	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1148973	1149393	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1149394	1149492	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1149493	1149582	0.76	+	0	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1149493	1149582	.	+	.	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	stop_codon	1149583	1149585	.	+	0	transcript_id "Ledus.S5G009500.t2"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	transcript	1146931	1149582	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	start_codon	1146931	1146933	.	+	0	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1146931	1147123	0.81	+	0	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1146931	1147123	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1147124	1147206	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1147207	1147265	0.97	+	2	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1147207	1147265	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1147266	1147372	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1147373	1147447	0.91	+	0	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1147373	1147447	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1147448	1147592	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1147593	1148687	0.96	+	0	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1147593	1148687	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1148688	1148775	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1148776	1148834	0.43	+	0	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1148776	1148834	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1148835	1148972	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1148973	1149393	0.39	+	1	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1148973	1149393	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1149394	1149492	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1149493	1149582	0.76	+	0	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1149493	1149582	.	+	.	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	stop_codon	1149583	1149585	.	+	0	transcript_id "Ledus.S5G009500.t3"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	transcript	1147896	1149582	.	+	.	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	start_codon	1147896	1147898	.	+	0	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1147896	1148687	0.97	+	0	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1147896	1148687	.	+	.	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1148688	1148775	.	+	.	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1148776	1148834	0.38	+	0	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1148776	1148834	.	+	.	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1148835	1148972	.	+	.	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1148973	1149393	0.34	+	1	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1148973	1149393	.	+	.	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	intron	1149394	1149492	.	+	.	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	CDS	1149493	1149582	0.77	+	0	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	exon	1149493	1149582	.	+	.	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
Ledus.S5	AUGUSTUS	stop_codon	1149583	1149585	.	+	0	transcript_id "Ledus.S5G009500.t4"; gene_id "Ledus.S5G009500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9213.t1 is derived from g10243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5434871	5438221	.	+	.	Ledus.S3G069000
Ledus.S3	AUGUSTUS	transcript	5434871	5438221	.	+	.	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	start_codon	5434871	5434873	.	+	0	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	CDS	5434871	5434896	0.68	+	0	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	exon	5434871	5434896	.	+	.	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	intron	5434897	5434980	.	+	.	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	CDS	5434981	5436214	1	+	1	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	exon	5434981	5436214	.	+	.	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	intron	5436215	5436494	.	+	.	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	CDS	5436495	5436722	0.96	+	0	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	exon	5436495	5436722	.	+	.	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	intron	5436723	5436834	.	+	.	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	CDS	5436835	5436926	1	+	0	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	exon	5436835	5436926	.	+	.	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	intron	5436927	5437017	.	+	.	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	CDS	5437018	5438221	1	+	1	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	exon	5437018	5438221	.	+	.	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
Ledus.S3	AUGUSTUS	stop_codon	5438222	5438224	.	+	0	transcript_id "Ledus.S3G069000.t1"; gene_id "Ledus.S3G069000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9526.t1 is derived from g10556.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7591448	7592046	.	+	.	Ledus.S3G100300
Ledus.S3	AUGUSTUS	transcript	7591448	7592046	.	+	.	transcript_id "Ledus.S3G100300.t1"; gene_id "Ledus.S3G100300"
Ledus.S3	AUGUSTUS	start_codon	7591448	7591450	.	+	0	transcript_id "Ledus.S3G100300.t1"; gene_id "Ledus.S3G100300"
Ledus.S3	AUGUSTUS	CDS	7591448	7591467	0.24	+	0	transcript_id "Ledus.S3G100300.t1"; gene_id "Ledus.S3G100300"
Ledus.S3	AUGUSTUS	exon	7591448	7591467	.	+	.	transcript_id "Ledus.S3G100300.t1"; gene_id "Ledus.S3G100300"
Ledus.S3	AUGUSTUS	intron	7591468	7591634	.	+	.	transcript_id "Ledus.S3G100300.t1"; gene_id "Ledus.S3G100300"
Ledus.S3	AUGUSTUS	CDS	7591635	7592046	1	+	1	transcript_id "Ledus.S3G100300.t1"; gene_id "Ledus.S3G100300"
Ledus.S3	AUGUSTUS	exon	7591635	7592046	.	+	.	transcript_id "Ledus.S3G100300.t1"; gene_id "Ledus.S3G100300"
Ledus.S3	AUGUSTUS	stop_codon	7592047	7592049	.	+	0	transcript_id "Ledus.S3G100300.t1"; gene_id "Ledus.S3G100300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9658.t1 is derived from g10688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8850260	8851006	.	-	.	Ledus.S3G113500
Ledus.S3	AUGUSTUS	transcript	8850260	8851006	.	-	.	transcript_id "Ledus.S3G113500.t1"; gene_id "Ledus.S3G113500"
Ledus.S3	AUGUSTUS	stop_codon	8850257	8850259	.	-	0	transcript_id "Ledus.S3G113500.t1"; gene_id "Ledus.S3G113500"
Ledus.S3	AUGUSTUS	CDS	8850260	8851006	1	-	0	transcript_id "Ledus.S3G113500.t1"; gene_id "Ledus.S3G113500"
Ledus.S3	AUGUSTUS	exon	8850260	8851006	.	-	.	transcript_id "Ledus.S3G113500.t1"; gene_id "Ledus.S3G113500"
Ledus.S3	AUGUSTUS	start_codon	8851004	8851006	.	-	0	transcript_id "Ledus.S3G113500.t1"; gene_id "Ledus.S3G113500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3228.t1 is derived from g663.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6999941	7004299	.	-	.	Ledus.S1G064900
Ledus.S1	AUGUSTUS	transcript	6999941	7004299	.	-	.	transcript_id "Ledus.S1G064900.t1"; gene_id "Ledus.S1G064900"
Ledus.S1	AUGUSTUS	stop_codon	6999938	6999940	.	-	0	transcript_id "Ledus.S1G064900.t1"; gene_id "Ledus.S1G064900"
Ledus.S1	AUGUSTUS	CDS	6999941	7000150	0.85	-	0	transcript_id "Ledus.S1G064900.t1"; gene_id "Ledus.S1G064900"
Ledus.S1	AUGUSTUS	exon	6999941	7000150	.	-	.	transcript_id "Ledus.S1G064900.t1"; gene_id "Ledus.S1G064900"
Ledus.S1	AUGUSTUS	intron	7000151	7000250	.	-	.	transcript_id "Ledus.S1G064900.t1"; gene_id "Ledus.S1G064900"
Ledus.S1	AUGUSTUS	CDS	7000251	7000369	0.71	-	2	transcript_id "Ledus.S1G064900.t1"; gene_id "Ledus.S1G064900"
Ledus.S1	AUGUSTUS	exon	7000251	7000369	.	-	.	transcript_id "Ledus.S1G064900.t1"; gene_id "Ledus.S1G064900"
Ledus.S1	AUGUSTUS	intron	7000370	7000434	.	-	.	transcript_id "Ledus.S1G064900.t1"; gene_id "Ledus.S1G064900"
Ledus.S1	AUGUSTUS	CDS	7000435	7004299	0.7	-	0	transcript_id "Ledus.S1G064900.t1"; gene_id "Ledus.S1G064900"
Ledus.S1	AUGUSTUS	exon	7000435	7004299	.	-	.	transcript_id "Ledus.S1G064900.t1"; gene_id "Ledus.S1G064900"
Ledus.S1	AUGUSTUS	start_codon	7004297	7004299	.	-	0	transcript_id "Ledus.S1G064900.t1"; gene_id "Ledus.S1G064900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4713.t1 is derived from g2151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19192177	19194066	.	-	.	Ledus.S1G213400
Ledus.S1	AUGUSTUS	transcript	19192177	19194066	.	-	.	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	stop_codon	19192174	19192176	.	-	0	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	CDS	19192177	19192233	0.91	-	0	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	exon	19192177	19192233	.	-	.	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	intron	19192234	19192331	.	-	.	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	CDS	19192332	19192820	1	-	0	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	exon	19192332	19192820	.	-	.	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	intron	19192821	19193352	.	-	.	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	CDS	19193353	19193481	1	-	0	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	exon	19193353	19193481	.	-	.	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	intron	19193482	19193616	.	-	.	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	CDS	19193617	19194066	0.96	-	0	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	exon	19193617	19194066	.	-	.	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
Ledus.S1	AUGUSTUS	start_codon	19194064	19194066	.	-	0	transcript_id "Ledus.S1G213400.t1"; gene_id "Ledus.S1G213400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1509.t1 is derived from g8370.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10633306	10633932	.	+	.	Ledus.S2G139100
Ledus.S2	AUGUSTUS	transcript	10633306	10633932	.	+	.	transcript_id "Ledus.S2G139100.t1"; gene_id "Ledus.S2G139100"
Ledus.S2	AUGUSTUS	start_codon	10633306	10633308	.	+	0	transcript_id "Ledus.S2G139100.t1"; gene_id "Ledus.S2G139100"
Ledus.S2	AUGUSTUS	CDS	10633306	10633932	0.55	+	0	transcript_id "Ledus.S2G139100.t1"; gene_id "Ledus.S2G139100"
Ledus.S2	AUGUSTUS	exon	10633306	10633932	.	+	.	transcript_id "Ledus.S2G139100.t1"; gene_id "Ledus.S2G139100"
Ledus.S2	AUGUSTUS	stop_codon	10633933	10633935	.	+	0	transcript_id "Ledus.S2G139100.t1"; gene_id "Ledus.S2G139100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7166.t1 is derived from g6697.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1924524	1928090	.	+	.	Ledus.C7G022700
Ledus.C7	AUGUSTUS	transcript	1924524	1928090	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	start_codon	1924524	1924526	.	+	0	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1924524	1924613	0.91	+	0	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1924524	1924613	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1924614	1924698	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1924699	1924887	1	+	0	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1924699	1924887	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1924888	1925078	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1925079	1925236	1	+	0	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1925079	1925236	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1925237	1925434	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1925435	1925503	1	+	1	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1925435	1925503	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1925504	1925590	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1925591	1925825	0.95	+	1	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1925591	1925825	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1925826	1925998	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1925999	1926162	1	+	0	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1925999	1926162	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1926163	1926277	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1926278	1926362	0.91	+	1	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1926278	1926362	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1926363	1926451	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1926452	1926574	1	+	0	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1926452	1926574	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1926575	1926672	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1926673	1926782	1	+	0	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1926673	1926782	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1926783	1926881	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1926882	1927013	1	+	1	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1926882	1927013	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1927014	1927171	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1927172	1927274	1	+	1	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1927172	1927274	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1927275	1927377	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1927378	1927496	1	+	0	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1927378	1927496	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1927497	1927587	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1927588	1927858	0.4	+	1	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1927588	1927858	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1927859	1927952	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1927953	1927966	1	+	0	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1927953	1927966	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	intron	1927967	1928050	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	CDS	1928051	1928090	1	+	1	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	exon	1928051	1928090	.	+	.	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
Ledus.C7	AUGUSTUS	stop_codon	1928091	1928093	.	+	0	transcript_id "Ledus.C7G022700.t1"; gene_id "Ledus.C7G022700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6989.t1 is derived from g6520.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	590551	595862	.	+	.	Ledus.C7G005000
Ledus.C7	AUGUSTUS	transcript	590551	595862	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	start_codon	590551	590553	.	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	590551	590916	0.93	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	590551	590916	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	590917	591069	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	591070	591291	1	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	591070	591291	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	591292	591636	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	591637	591758	1	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	591637	591758	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	591759	591858	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	591859	592009	1	+	1	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	591859	592009	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	592010	592210	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	592211	592282	1	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	592211	592282	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	592283	592558	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	592559	592654	1	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	592559	592654	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	592655	592739	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	592740	592828	1	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	592740	592828	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	592829	592930	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	592931	592997	0.98	+	1	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	592931	592997	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	592998	593097	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	593098	593136	1	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	593098	593136	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	593137	593429	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	593430	593490	1	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	593430	593490	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	593491	593683	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	593684	593793	1	+	2	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	593684	593793	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	593794	593977	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	593978	594052	1	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	593978	594052	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	594053	594153	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	594154	594222	1	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	594154	594222	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	594223	594352	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	594353	594474	0.99	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	594353	594474	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	594475	594586	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	594587	594712	1	+	1	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	594587	594712	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	594713	594884	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	594885	595005	1	+	1	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	594885	595005	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	595006	595102	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	595103	595203	1	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	595103	595203	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	595204	595380	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	595381	595441	1	+	1	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	595381	595441	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	595442	595603	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	595604	595657	1	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	595604	595657	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	intron	595658	595760	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	CDS	595761	595862	1	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	exon	595761	595862	.	+	.	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
Ledus.C7	AUGUSTUS	stop_codon	595863	595865	.	+	0	transcript_id "Ledus.C7G005000.t1"; gene_id "Ledus.C7G005000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg154.t1 is derived from g7015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	342059	344068	.	+	.	Ledus.S2G003600
Ledus.S2	AUGUSTUS	transcript	342059	342902	.	+	.	transcript_id "Ledus.S2G003600.t1"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	start_codon	342059	342061	.	+	0	transcript_id "Ledus.S2G003600.t1"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	CDS	342059	342779	0.53	+	0	transcript_id "Ledus.S2G003600.t1"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	exon	342059	342779	.	+	.	transcript_id "Ledus.S2G003600.t1"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	intron	342780	342879	.	+	.	transcript_id "Ledus.S2G003600.t1"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	CDS	342880	342902	0.92	+	2	transcript_id "Ledus.S2G003600.t1"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	exon	342880	342902	.	+	.	transcript_id "Ledus.S2G003600.t1"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	stop_codon	342903	342905	.	+	0	transcript_id "Ledus.S2G003600.t1"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	transcript	342083	344068	.	+	.	transcript_id "Ledus.S2G003600.t2"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	start_codon	342083	342085	.	+	0	transcript_id "Ledus.S2G003600.t2"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	CDS	342083	343709	0.55	+	0	transcript_id "Ledus.S2G003600.t2"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	exon	342083	343709	.	+	.	transcript_id "Ledus.S2G003600.t2"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	intron	343710	343928	.	+	.	transcript_id "Ledus.S2G003600.t2"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	CDS	343929	344068	0.33	+	2	transcript_id "Ledus.S2G003600.t2"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	exon	343929	344068	.	+	.	transcript_id "Ledus.S2G003600.t2"; gene_id "Ledus.S2G003600"
Ledus.S2	AUGUSTUS	stop_codon	344069	344071	.	+	0	transcript_id "Ledus.S2G003600.t2"; gene_id "Ledus.S2G003600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11765.t1 is derived from g5384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6658793	6659952	.	+	.	Ledus.S4G092100
Ledus.S4	AUGUSTUS	transcript	6658793	6659952	.	+	.	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	start_codon	6658793	6658795	.	+	0	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	CDS	6658793	6658948	1	+	0	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	exon	6658793	6658948	.	+	.	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	intron	6658949	6659096	.	+	.	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	CDS	6659097	6659234	1	+	0	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	exon	6659097	6659234	.	+	.	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	intron	6659235	6659315	.	+	.	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	CDS	6659316	6659398	1	+	0	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	exon	6659316	6659398	.	+	.	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	intron	6659399	6659471	.	+	.	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	CDS	6659472	6659621	1	+	1	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	exon	6659472	6659621	.	+	.	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	intron	6659622	6659704	.	+	.	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	CDS	6659705	6659748	1	+	1	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	exon	6659705	6659748	.	+	.	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	intron	6659749	6659833	.	+	.	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	CDS	6659834	6659952	1	+	2	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	exon	6659834	6659952	.	+	.	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
Ledus.S4	AUGUSTUS	stop_codon	6659953	6659955	.	+	0	transcript_id "Ledus.S4G092100.t1"; gene_id "Ledus.S4G092100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg602.t1 is derived from g7463.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3584720	3588587	.	+	.	Ledus.S2G048400
Ledus.S2	AUGUSTUS	transcript	3584720	3588587	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	start_codon	3584720	3584722	.	+	0	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3584720	3584872	0.87	+	0	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3584720	3584872	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3584873	3585064	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3585065	3585161	1	+	0	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3585065	3585161	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3585162	3585240	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3585241	3585418	1	+	2	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3585241	3585418	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3585419	3585620	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3585621	3585726	0.73	+	1	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3585621	3585726	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3585727	3585834	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3585835	3585917	1	+	0	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3585835	3585917	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3585918	3586177	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3586178	3586204	1	+	1	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3586178	3586204	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3586205	3586422	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3586423	3586730	0.94	+	1	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3586423	3586730	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3586731	3586874	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3586875	3586958	1	+	2	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3586875	3586958	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3586959	3587110	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3587111	3587175	1	+	2	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3587111	3587175	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3587176	3587272	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3587273	3587329	1	+	0	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3587273	3587329	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3587330	3587447	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3587448	3587519	1	+	0	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3587448	3587519	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3587520	3587642	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3587643	3587903	0.97	+	0	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3587643	3587903	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3587904	3588047	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3588048	3588163	1	+	0	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3588048	3588163	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3588164	3588262	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3588263	3588367	1	+	1	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3588263	3588367	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	intron	3588368	3588454	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	CDS	3588455	3588587	1	+	1	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	exon	3588455	3588587	.	+	.	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
Ledus.S2	AUGUSTUS	stop_codon	3588588	3588590	.	+	0	transcript_id "Ledus.S2G048400.t1"; gene_id "Ledus.S2G048400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1382.t1 is derived from g8243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9711846	9712299	.	-	.	Ledus.S2G126400
Ledus.S2	AUGUSTUS	transcript	9711846	9712299	.	-	.	transcript_id "Ledus.S2G126400.t1"; gene_id "Ledus.S2G126400"
Ledus.S2	AUGUSTUS	stop_codon	9711843	9711845	.	-	0	transcript_id "Ledus.S2G126400.t1"; gene_id "Ledus.S2G126400"
Ledus.S2	AUGUSTUS	CDS	9711846	9711939	1	-	1	transcript_id "Ledus.S2G126400.t1"; gene_id "Ledus.S2G126400"
Ledus.S2	AUGUSTUS	exon	9711846	9711939	.	-	.	transcript_id "Ledus.S2G126400.t1"; gene_id "Ledus.S2G126400"
Ledus.S2	AUGUSTUS	intron	9711940	9712029	.	-	.	transcript_id "Ledus.S2G126400.t1"; gene_id "Ledus.S2G126400"
Ledus.S2	AUGUSTUS	CDS	9712030	9712194	1	-	1	transcript_id "Ledus.S2G126400.t1"; gene_id "Ledus.S2G126400"
Ledus.S2	AUGUSTUS	exon	9712030	9712194	.	-	.	transcript_id "Ledus.S2G126400.t1"; gene_id "Ledus.S2G126400"
Ledus.S2	AUGUSTUS	intron	9712195	9712276	.	-	.	transcript_id "Ledus.S2G126400.t1"; gene_id "Ledus.S2G126400"
Ledus.S2	AUGUSTUS	CDS	9712277	9712299	0.99	-	0	transcript_id "Ledus.S2G126400.t1"; gene_id "Ledus.S2G126400"
Ledus.S2	AUGUSTUS	exon	9712277	9712299	.	-	.	transcript_id "Ledus.S2G126400.t1"; gene_id "Ledus.S2G126400"
Ledus.S2	AUGUSTUS	start_codon	9712297	9712299	.	-	0	transcript_id "Ledus.S2G126400.t1"; gene_id "Ledus.S2G126400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2845.t1 is derived from g279.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4143586	4144506	.	+	.	Ledus.S1G026600
Ledus.S1	AUGUSTUS	transcript	4143586	4144506	.	+	.	transcript_id "Ledus.S1G026600.t1"; gene_id "Ledus.S1G026600"
Ledus.S1	AUGUSTUS	start_codon	4143586	4143588	.	+	0	transcript_id "Ledus.S1G026600.t1"; gene_id "Ledus.S1G026600"
Ledus.S1	AUGUSTUS	CDS	4143586	4143730	0.83	+	0	transcript_id "Ledus.S1G026600.t1"; gene_id "Ledus.S1G026600"
Ledus.S1	AUGUSTUS	exon	4143586	4143730	.	+	.	transcript_id "Ledus.S1G026600.t1"; gene_id "Ledus.S1G026600"
Ledus.S1	AUGUSTUS	intron	4143731	4143810	.	+	.	transcript_id "Ledus.S1G026600.t1"; gene_id "Ledus.S1G026600"
Ledus.S1	AUGUSTUS	CDS	4143811	4144108	0.76	+	2	transcript_id "Ledus.S1G026600.t1"; gene_id "Ledus.S1G026600"
Ledus.S1	AUGUSTUS	exon	4143811	4144108	.	+	.	transcript_id "Ledus.S1G026600.t1"; gene_id "Ledus.S1G026600"
Ledus.S1	AUGUSTUS	intron	4144109	4144199	.	+	.	transcript_id "Ledus.S1G026600.t1"; gene_id "Ledus.S1G026600"
Ledus.S1	AUGUSTUS	CDS	4144200	4144506	1	+	1	transcript_id "Ledus.S1G026600.t1"; gene_id "Ledus.S1G026600"
Ledus.S1	AUGUSTUS	exon	4144200	4144506	.	+	.	transcript_id "Ledus.S1G026600.t1"; gene_id "Ledus.S1G026600"
Ledus.S1	AUGUSTUS	stop_codon	4144507	4144509	.	+	0	transcript_id "Ledus.S1G026600.t1"; gene_id "Ledus.S1G026600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4363.t1 is derived from g1799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16615860	16619779	.	+	.	Ledus.S1G178400
Ledus.S1	AUGUSTUS	transcript	16615860	16619779	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	start_codon	16615860	16615862	.	+	0	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	CDS	16615860	16615935	0.49	+	0	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	exon	16615860	16615935	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	intron	16615936	16616097	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	CDS	16616098	16616189	0.67	+	2	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	exon	16616098	16616189	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	intron	16616190	16616311	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	CDS	16616312	16616391	0.46	+	0	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	exon	16616312	16616391	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	intron	16616392	16616791	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	CDS	16616792	16616852	0.5	+	1	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	exon	16616792	16616852	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	intron	16616853	16617002	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	CDS	16617003	16618646	0.9	+	0	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	exon	16617003	16618646	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	intron	16618647	16618822	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	CDS	16618823	16619062	0.93	+	0	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	exon	16618823	16619062	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	intron	16619063	16619196	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	CDS	16619197	16619313	0.59	+	0	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	exon	16619197	16619313	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	intron	16619314	16619569	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	CDS	16619570	16619779	0.67	+	0	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	exon	16619570	16619779	.	+	.	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
Ledus.S1	AUGUSTUS	stop_codon	16619780	16619782	.	+	0	transcript_id "Ledus.S1G178400.t1"; gene_id "Ledus.S1G178400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1041.t1 is derived from g7902.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6914299	6917208	.	-	.	Ledus.S2G092300
Ledus.S2	AUGUSTUS	transcript	6914299	6917208	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	stop_codon	6914296	6914298	.	-	0	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6914299	6914499	1	-	0	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6914299	6914499	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6914500	6914683	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6914684	6914752	1	-	0	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6914684	6914752	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6914753	6914935	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6914936	6915058	1	-	0	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6914936	6915058	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6915059	6915283	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6915284	6915381	1	-	2	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6915284	6915381	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6915382	6915488	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6915489	6915627	0.36	-	0	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6915489	6915627	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6915628	6915776	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6915777	6915917	0.48	-	0	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6915777	6915917	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6915918	6916027	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6916028	6916101	0.98	-	2	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6916028	6916101	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6916102	6916231	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6916232	6916320	0.99	-	1	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6916232	6916320	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6916321	6916455	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6916456	6916562	1	-	0	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6916456	6916562	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6916563	6916742	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6916743	6916894	1	-	2	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6916743	6916894	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6916895	6916988	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6916989	6917208	0.86	-	0	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6916989	6917208	.	-	.	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	start_codon	6917206	6917208	.	-	0	transcript_id "Ledus.S2G092300.t1"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	transcript	6914299	6917208	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	stop_codon	6914296	6914298	.	-	0	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6914299	6914499	1	-	0	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6914299	6914499	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6914500	6914683	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6914684	6914752	1	-	0	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6914684	6914752	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6914753	6914935	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6914936	6915058	1	-	0	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6914936	6915058	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6915059	6915283	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6915284	6915381	0.97	-	2	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6915284	6915381	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6915382	6915488	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6915489	6915627	0.36	-	0	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6915489	6915627	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6915628	6915776	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6915777	6915917	0.41	-	0	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6915777	6915917	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6915918	6916027	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6916028	6916101	0.93	-	2	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6916028	6916101	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6916102	6916263	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6916264	6916310	0.91	-	1	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6916264	6916310	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6916311	6916455	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6916456	6916562	0.98	-	0	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6916456	6916562	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6916563	6916742	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6916743	6916894	1	-	2	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6916743	6916894	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	intron	6916895	6916988	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	CDS	6916989	6917208	0.85	-	0	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	exon	6916989	6917208	.	-	.	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
Ledus.S2	AUGUSTUS	start_codon	6917206	6917208	.	-	0	transcript_id "Ledus.S2G092300.t2"; gene_id "Ledus.S2G092300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg195.t1 is derived from g7056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	733459	734973	.	-	.	Ledus.S2G007700
Ledus.S2	AUGUSTUS	transcript	733459	734973	.	-	.	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	stop_codon	733456	733458	.	-	0	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	CDS	733459	733998	0.97	-	0	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	exon	733459	733998	.	-	.	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	intron	733999	734102	.	-	.	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	CDS	734103	734277	0.83	-	1	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	exon	734103	734277	.	-	.	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	intron	734278	734377	.	-	.	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	CDS	734378	734445	1	-	0	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	exon	734378	734445	.	-	.	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	intron	734446	734572	.	-	.	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	CDS	734573	734682	0.94	-	2	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	exon	734573	734682	.	-	.	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	intron	734683	734786	.	-	.	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	CDS	734787	734973	0.74	-	0	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	exon	734787	734973	.	-	.	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
Ledus.S2	AUGUSTUS	start_codon	734971	734973	.	-	0	transcript_id "Ledus.S2G007700.t1"; gene_id "Ledus.S2G007700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12692.t1 is derived from g6314.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13923037	13923432	.	+	.	Ledus.S4G184800
Ledus.S4	AUGUSTUS	transcript	13923037	13923432	.	+	.	transcript_id "Ledus.S4G184800.t1"; gene_id "Ledus.S4G184800"
Ledus.S4	AUGUSTUS	start_codon	13923037	13923039	.	+	0	transcript_id "Ledus.S4G184800.t1"; gene_id "Ledus.S4G184800"
Ledus.S4	AUGUSTUS	CDS	13923037	13923432	0.84	+	0	transcript_id "Ledus.S4G184800.t1"; gene_id "Ledus.S4G184800"
Ledus.S4	AUGUSTUS	exon	13923037	13923432	.	+	.	transcript_id "Ledus.S4G184800.t1"; gene_id "Ledus.S4G184800"
Ledus.S4	AUGUSTUS	stop_codon	13923433	13923435	.	+	0	transcript_id "Ledus.S4G184800.t1"; gene_id "Ledus.S4G184800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12550.t1 is derived from g6172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12850039	12850345	.	+	.	Ledus.S4G170600
Ledus.S4	AUGUSTUS	transcript	12850039	12850345	.	+	.	transcript_id "Ledus.S4G170600.t1"; gene_id "Ledus.S4G170600"
Ledus.S4	AUGUSTUS	start_codon	12850039	12850041	.	+	0	transcript_id "Ledus.S4G170600.t1"; gene_id "Ledus.S4G170600"
Ledus.S4	AUGUSTUS	CDS	12850039	12850176	0.35	+	0	transcript_id "Ledus.S4G170600.t1"; gene_id "Ledus.S4G170600"
Ledus.S4	AUGUSTUS	exon	12850039	12850176	.	+	.	transcript_id "Ledus.S4G170600.t1"; gene_id "Ledus.S4G170600"
Ledus.S4	AUGUSTUS	intron	12850177	12850255	.	+	.	transcript_id "Ledus.S4G170600.t1"; gene_id "Ledus.S4G170600"
Ledus.S4	AUGUSTUS	CDS	12850256	12850345	0.52	+	0	transcript_id "Ledus.S4G170600.t1"; gene_id "Ledus.S4G170600"
Ledus.S4	AUGUSTUS	exon	12850256	12850345	.	+	.	transcript_id "Ledus.S4G170600.t1"; gene_id "Ledus.S4G170600"
Ledus.S4	AUGUSTUS	stop_codon	12850346	12850348	.	+	0	transcript_id "Ledus.S4G170600.t1"; gene_id "Ledus.S4G170600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12804.t1 is derived from g6426.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14826112	14829494	.	+	.	Ledus.S4G196000
Ledus.S4	AUGUSTUS	transcript	14826112	14829494	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	start_codon	14826112	14826114	.	+	0	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	CDS	14826112	14826355	0.61	+	0	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	exon	14826112	14826355	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	intron	14826356	14826566	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	CDS	14826567	14826652	1	+	2	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	exon	14826567	14826652	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	intron	14826653	14826799	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	CDS	14826800	14826865	1	+	0	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	exon	14826800	14826865	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	intron	14826866	14826974	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	CDS	14826975	14827145	0.93	+	0	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	exon	14826975	14827145	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	intron	14827146	14827265	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	CDS	14827266	14827436	1	+	0	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	exon	14827266	14827436	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	intron	14827437	14827533	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	CDS	14827534	14827689	1	+	0	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	exon	14827534	14827689	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	intron	14827690	14827773	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	CDS	14827774	14827920	1	+	0	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	exon	14827774	14827920	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	intron	14827921	14828062	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	CDS	14828063	14828134	1	+	0	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	exon	14828063	14828134	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	intron	14828135	14828201	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	CDS	14828202	14828720	1	+	0	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	exon	14828202	14828720	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	intron	14828721	14828852	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	CDS	14828853	14829043	1	+	0	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	exon	14828853	14829043	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	intron	14829044	14829478	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	CDS	14829479	14829494	1	+	1	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	exon	14829479	14829494	.	+	.	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
Ledus.S4	AUGUSTUS	stop_codon	14829495	14829497	.	+	0	transcript_id "Ledus.S4G196000.t1"; gene_id "Ledus.S4G196000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12038.t1 is derived from g5657.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9048547	9050522	.	-	.	Ledus.S4G119400
Ledus.S4	AUGUSTUS	transcript	9048547	9050522	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	stop_codon	9048544	9048546	.	-	0	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	CDS	9048547	9048591	0.73	-	0	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	exon	9048547	9048591	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	intron	9048592	9048699	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	CDS	9048700	9048729	0.83	-	0	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	exon	9048700	9048729	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	intron	9048730	9048844	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	CDS	9048845	9048974	1	-	1	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	exon	9048845	9048974	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	intron	9048975	9049092	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	CDS	9049093	9049181	1	-	0	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	exon	9049093	9049181	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	intron	9049182	9049310	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	CDS	9049311	9049469	0.57	-	0	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	exon	9049311	9049469	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	intron	9049470	9049837	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	CDS	9049838	9049946	0.49	-	1	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	exon	9049838	9049946	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	intron	9049947	9050006	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	CDS	9050007	9050176	0.82	-	0	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	exon	9050007	9050176	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	intron	9050177	9050273	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	CDS	9050274	9050522	0.88	-	0	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	exon	9050274	9050522	.	-	.	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
Ledus.S4	AUGUSTUS	start_codon	9050520	9050522	.	-	0	transcript_id "Ledus.S4G119400.t1"; gene_id "Ledus.S4G119400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1765.t1 is derived from g8627.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12412152	12413522	.	-	.	Ledus.S2G164700
Ledus.S2	AUGUSTUS	transcript	12412152	12413522	.	-	.	transcript_id "Ledus.S2G164700.t1"; gene_id "Ledus.S2G164700"
Ledus.S2	AUGUSTUS	stop_codon	12412149	12412151	.	-	0	transcript_id "Ledus.S2G164700.t1"; gene_id "Ledus.S2G164700"
Ledus.S2	AUGUSTUS	CDS	12412152	12413522	0.9	-	0	transcript_id "Ledus.S2G164700.t1"; gene_id "Ledus.S2G164700"
Ledus.S2	AUGUSTUS	exon	12412152	12413522	.	-	.	transcript_id "Ledus.S2G164700.t1"; gene_id "Ledus.S2G164700"
Ledus.S2	AUGUSTUS	start_codon	12413520	12413522	.	-	0	transcript_id "Ledus.S2G164700.t1"; gene_id "Ledus.S2G164700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7.t1 is derived from g11870.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C46	AUGUSTUS	gene	23965	25000	.	+	.	Ledus.C46G000300
Ledus.C46	AUGUSTUS	transcript	23965	25000	.	+	.	transcript_id "Ledus.C46G000300.t1"; gene_id "Ledus.C46G000300"
Ledus.C46	AUGUSTUS	start_codon	23965	23967	.	+	0	transcript_id "Ledus.C46G000300.t1"; gene_id "Ledus.C46G000300"
Ledus.C46	AUGUSTUS	CDS	23965	25000	0.33	+	0	transcript_id "Ledus.C46G000300.t1"; gene_id "Ledus.C46G000300"
Ledus.C46	AUGUSTUS	exon	23965	25000	.	+	.	transcript_id "Ledus.C46G000300.t1"; gene_id "Ledus.C46G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13034.t1 is derived from g6844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3611187	3612307	.	+	.	Ledus.S6G009600
Ledus.S6	AUGUSTUS	transcript	3611187	3612307	.	+	.	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	start_codon	3611187	3611189	.	+	0	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	CDS	3611187	3611569	0.6	+	0	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	exon	3611187	3611569	.	+	.	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	intron	3611570	3611665	.	+	.	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	CDS	3611666	3611742	0.46	+	1	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	exon	3611666	3611742	.	+	.	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	intron	3611743	3611836	.	+	.	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	CDS	3611837	3612175	0.63	+	2	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	exon	3611837	3612175	.	+	.	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	intron	3612176	3612302	.	+	.	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	CDS	3612303	3612307	0.35	+	2	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	exon	3612303	3612307	.	+	.	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
Ledus.S6	AUGUSTUS	stop_codon	3612308	3612310	.	+	0	transcript_id "Ledus.S6G009600.t1"; gene_id "Ledus.S6G009600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2485.t1 is derived from g9348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18437323	18438565	.	+	.	Ledus.S2G236700
Ledus.S2	AUGUSTUS	transcript	18437323	18438565	.	+	.	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	start_codon	18437323	18437325	.	+	0	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	CDS	18437323	18437550	1	+	0	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	exon	18437323	18437550	.	+	.	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	intron	18437551	18437651	.	+	.	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	CDS	18437652	18437840	1	+	0	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	exon	18437652	18437840	.	+	.	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	intron	18437841	18437920	.	+	.	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	CDS	18437921	18438086	1	+	0	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	exon	18437921	18438086	.	+	.	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	intron	18438087	18438182	.	+	.	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	CDS	18438183	18438565	1	+	2	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	exon	18438183	18438565	.	+	.	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
Ledus.S2	AUGUSTUS	stop_codon	18438566	18438568	.	+	0	transcript_id "Ledus.S2G236700.t1"; gene_id "Ledus.S2G236700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11707.t1 is derived from g5326.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6128988	6129260	.	-	.	Ledus.S4G086300
Ledus.S4	AUGUSTUS	transcript	6128988	6129260	.	-	.	transcript_id "Ledus.S4G086300.t1"; gene_id "Ledus.S4G086300"
Ledus.S4	AUGUSTUS	stop_codon	6128985	6128987	.	-	0	transcript_id "Ledus.S4G086300.t1"; gene_id "Ledus.S4G086300"
Ledus.S4	AUGUSTUS	CDS	6128988	6129260	0.83	-	0	transcript_id "Ledus.S4G086300.t1"; gene_id "Ledus.S4G086300"
Ledus.S4	AUGUSTUS	exon	6128988	6129260	.	-	.	transcript_id "Ledus.S4G086300.t1"; gene_id "Ledus.S4G086300"
Ledus.S4	AUGUSTUS	start_codon	6129258	6129260	.	-	0	transcript_id "Ledus.S4G086300.t1"; gene_id "Ledus.S4G086300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1391.t1 is derived from g8252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9741644	9742689	.	-	.	Ledus.S2G127300
Ledus.S2	AUGUSTUS	transcript	9741644	9742689	.	-	.	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	stop_codon	9741641	9741643	.	-	0	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	CDS	9741644	9741730	0.76	-	0	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	exon	9741644	9741730	.	-	.	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	intron	9741731	9741862	.	-	.	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	CDS	9741863	9742063	0.91	-	0	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	exon	9741863	9742063	.	-	.	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	intron	9742064	9742152	.	-	.	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	CDS	9742153	9742365	0.9	-	0	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	exon	9742153	9742365	.	-	.	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	intron	9742366	9742461	.	-	.	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	CDS	9742462	9742689	0.98	-	0	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	exon	9742462	9742689	.	-	.	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
Ledus.S2	AUGUSTUS	start_codon	9742687	9742689	.	-	0	transcript_id "Ledus.S2G127300.t1"; gene_id "Ledus.S2G127300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9812.t1 is derived from g10843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10082347	10083310	.	+	.	Ledus.S3G129000
Ledus.S3	AUGUSTUS	transcript	10082347	10083310	.	+	.	transcript_id "Ledus.S3G129000.t1"; gene_id "Ledus.S3G129000"
Ledus.S3	AUGUSTUS	start_codon	10082347	10082349	.	+	0	transcript_id "Ledus.S3G129000.t1"; gene_id "Ledus.S3G129000"
Ledus.S3	AUGUSTUS	CDS	10082347	10082412	0.69	+	0	transcript_id "Ledus.S3G129000.t1"; gene_id "Ledus.S3G129000"
Ledus.S3	AUGUSTUS	exon	10082347	10082412	.	+	.	transcript_id "Ledus.S3G129000.t1"; gene_id "Ledus.S3G129000"
Ledus.S3	AUGUSTUS	intron	10082413	10082788	.	+	.	transcript_id "Ledus.S3G129000.t1"; gene_id "Ledus.S3G129000"
Ledus.S3	AUGUSTUS	CDS	10082789	10082873	0.55	+	0	transcript_id "Ledus.S3G129000.t1"; gene_id "Ledus.S3G129000"
Ledus.S3	AUGUSTUS	exon	10082789	10082873	.	+	.	transcript_id "Ledus.S3G129000.t1"; gene_id "Ledus.S3G129000"
Ledus.S3	AUGUSTUS	intron	10082874	10082942	.	+	.	transcript_id "Ledus.S3G129000.t1"; gene_id "Ledus.S3G129000"
Ledus.S3	AUGUSTUS	CDS	10082943	10083310	0.28	+	2	transcript_id "Ledus.S3G129000.t1"; gene_id "Ledus.S3G129000"
Ledus.S3	AUGUSTUS	exon	10082943	10083310	.	+	.	transcript_id "Ledus.S3G129000.t1"; gene_id "Ledus.S3G129000"
Ledus.S3	AUGUSTUS	stop_codon	10083311	10083313	.	+	0	transcript_id "Ledus.S3G129000.t1"; gene_id "Ledus.S3G129000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11699.t1 is derived from g5318.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6057781	6060060	.	+	.	Ledus.S4G085500
Ledus.S4	AUGUSTUS	transcript	6057781	6060060	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	start_codon	6057781	6057783	.	+	0	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	CDS	6057781	6057841	0.72	+	0	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	exon	6057781	6057841	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	intron	6057842	6058093	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	CDS	6058094	6058176	1	+	2	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	exon	6058094	6058176	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	intron	6058177	6058273	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	CDS	6058274	6058349	1	+	0	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	exon	6058274	6058349	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	intron	6058350	6058440	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	CDS	6058441	6058508	1	+	2	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	exon	6058441	6058508	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	intron	6058509	6058675	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	CDS	6058676	6058757	1	+	0	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	exon	6058676	6058757	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	intron	6058758	6058873	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	CDS	6058874	6058983	1	+	2	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	exon	6058874	6058983	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	intron	6058984	6059073	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	CDS	6059074	6059157	1	+	0	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	exon	6059074	6059157	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	intron	6059158	6059242	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	CDS	6059243	6059389	1	+	0	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	exon	6059243	6059389	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	intron	6059390	6059557	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	CDS	6059558	6059663	1	+	0	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	exon	6059558	6059663	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	intron	6059664	6059779	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	CDS	6059780	6059899	1	+	2	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	exon	6059780	6059899	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	intron	6059900	6059989	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	CDS	6059990	6060060	1	+	2	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	exon	6059990	6060060	.	+	.	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
Ledus.S4	AUGUSTUS	stop_codon	6060061	6060063	.	+	0	transcript_id "Ledus.S4G085500.t1"; gene_id "Ledus.S4G085500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10177.t1 is derived from g11207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13453688	13454941	.	+	.	Ledus.S3G165400
Ledus.S3	AUGUSTUS	transcript	13453688	13454941	.	+	.	transcript_id "Ledus.S3G165400.t1"; gene_id "Ledus.S3G165400"
Ledus.S3	AUGUSTUS	start_codon	13453688	13453690	.	+	0	transcript_id "Ledus.S3G165400.t1"; gene_id "Ledus.S3G165400"
Ledus.S3	AUGUSTUS	CDS	13453688	13454941	1	+	0	transcript_id "Ledus.S3G165400.t1"; gene_id "Ledus.S3G165400"
Ledus.S3	AUGUSTUS	exon	13453688	13454941	.	+	.	transcript_id "Ledus.S3G165400.t1"; gene_id "Ledus.S3G165400"
Ledus.S3	AUGUSTUS	stop_codon	13454942	13454944	.	+	0	transcript_id "Ledus.S3G165400.t1"; gene_id "Ledus.S3G165400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6904.t1 is derived from g4348.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35093963	35094253	.	-	.	Ledus.S1G432500
Ledus.S1	AUGUSTUS	transcript	35093963	35094253	.	-	.	transcript_id "Ledus.S1G432500.t1"; gene_id "Ledus.S1G432500"
Ledus.S1	AUGUSTUS	stop_codon	35093960	35093962	.	-	0	transcript_id "Ledus.S1G432500.t1"; gene_id "Ledus.S1G432500"
Ledus.S1	AUGUSTUS	CDS	35093963	35094253	0.55	-	0	transcript_id "Ledus.S1G432500.t1"; gene_id "Ledus.S1G432500"
Ledus.S1	AUGUSTUS	exon	35093963	35094253	.	-	.	transcript_id "Ledus.S1G432500.t1"; gene_id "Ledus.S1G432500"
Ledus.S1	AUGUSTUS	start_codon	35094251	35094253	.	-	0	transcript_id "Ledus.S1G432500.t1"; gene_id "Ledus.S1G432500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1388.t1 is derived from g8249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9729026	9730998	.	+	.	Ledus.S2G127000
Ledus.S2	AUGUSTUS	transcript	9729026	9730998	.	+	.	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	start_codon	9729026	9729028	.	+	0	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	CDS	9729026	9729066	0.99	+	0	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	exon	9729026	9729066	.	+	.	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	intron	9729067	9729152	.	+	.	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	CDS	9729153	9730002	1	+	1	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	exon	9729153	9730002	.	+	.	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	intron	9730003	9730093	.	+	.	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	CDS	9730094	9730231	1	+	0	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	exon	9730094	9730231	.	+	.	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	intron	9730232	9730325	.	+	.	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	CDS	9730326	9730565	0.87	+	0	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	exon	9730326	9730565	.	+	.	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	intron	9730566	9730674	.	+	.	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	CDS	9730675	9730775	0.46	+	0	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	exon	9730675	9730775	.	+	.	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	intron	9730776	9730970	.	+	.	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	CDS	9730971	9730998	0.48	+	1	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	exon	9730971	9730998	.	+	.	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
Ledus.S2	AUGUSTUS	stop_codon	9730999	9731001	.	+	0	transcript_id "Ledus.S2G127000.t1"; gene_id "Ledus.S2G127000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9167.t1 is derived from g10197.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5200723	5202047	.	-	.	Ledus.S3G064400
Ledus.S3	AUGUSTUS	transcript	5200723	5202047	.	-	.	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	stop_codon	5200720	5200722	.	-	0	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	CDS	5200723	5200986	1	-	0	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	exon	5200723	5200986	.	-	.	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	intron	5200987	5201084	.	-	.	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	CDS	5201085	5201211	1	-	1	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	exon	5201085	5201211	.	-	.	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	intron	5201212	5201293	.	-	.	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	CDS	5201294	5201362	1	-	1	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	exon	5201294	5201362	.	-	.	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	intron	5201363	5201474	.	-	.	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	CDS	5201475	5201673	1	-	2	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	exon	5201475	5201673	.	-	.	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	intron	5201674	5201800	.	-	.	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	CDS	5201801	5202047	1	-	0	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	exon	5201801	5202047	.	-	.	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
Ledus.S3	AUGUSTUS	start_codon	5202045	5202047	.	-	0	transcript_id "Ledus.S3G064400.t1"; gene_id "Ledus.S3G064400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10585.t1 is derived from g11615.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16257960	16258917	.	-	.	Ledus.S3G206200
Ledus.S3	AUGUSTUS	transcript	16257960	16258917	.	-	.	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	stop_codon	16257957	16257959	.	-	0	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	CDS	16257960	16258131	0.97	-	1	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	exon	16257960	16258131	.	-	.	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	intron	16258132	16258274	.	-	.	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	CDS	16258275	16258445	1	-	1	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	exon	16258275	16258445	.	-	.	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	intron	16258446	16258566	.	-	.	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	CDS	16258567	16258644	1	-	1	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	exon	16258567	16258644	.	-	.	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	intron	16258645	16258807	.	-	.	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	CDS	16258808	16258917	0.84	-	0	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	exon	16258808	16258917	.	-	.	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
Ledus.S3	AUGUSTUS	start_codon	16258915	16258917	.	-	0	transcript_id "Ledus.S3G206200.t1"; gene_id "Ledus.S3G206200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3624.t1 is derived from g1060.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10249190	10250472	.	-	.	Ledus.S1G104500
Ledus.S1	AUGUSTUS	transcript	10249190	10250472	.	-	.	transcript_id "Ledus.S1G104500.t1"; gene_id "Ledus.S1G104500"
Ledus.S1	AUGUSTUS	stop_codon	10249187	10249189	.	-	0	transcript_id "Ledus.S1G104500.t1"; gene_id "Ledus.S1G104500"
Ledus.S1	AUGUSTUS	CDS	10249190	10249828	0.97	-	0	transcript_id "Ledus.S1G104500.t1"; gene_id "Ledus.S1G104500"
Ledus.S1	AUGUSTUS	exon	10249190	10249828	.	-	.	transcript_id "Ledus.S1G104500.t1"; gene_id "Ledus.S1G104500"
Ledus.S1	AUGUSTUS	intron	10249829	10249953	.	-	.	transcript_id "Ledus.S1G104500.t1"; gene_id "Ledus.S1G104500"
Ledus.S1	AUGUSTUS	CDS	10249954	10250472	0.35	-	0	transcript_id "Ledus.S1G104500.t1"; gene_id "Ledus.S1G104500"
Ledus.S1	AUGUSTUS	exon	10249954	10250472	.	-	.	transcript_id "Ledus.S1G104500.t1"; gene_id "Ledus.S1G104500"
Ledus.S1	AUGUSTUS	start_codon	10250470	10250472	.	-	0	transcript_id "Ledus.S1G104500.t1"; gene_id "Ledus.S1G104500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3031.t1 is derived from g466.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5392707	5394095	.	+	.	Ledus.S1G045200
Ledus.S1	AUGUSTUS	transcript	5392707	5394095	.	+	.	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	start_codon	5392707	5392709	.	+	0	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	CDS	5392707	5392936	0.93	+	0	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	exon	5392707	5392936	.	+	.	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	intron	5392937	5393051	.	+	.	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	CDS	5393052	5393128	1	+	1	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	exon	5393052	5393128	.	+	.	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	intron	5393129	5393277	.	+	.	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	CDS	5393278	5393648	0.99	+	2	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	exon	5393278	5393648	.	+	.	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	intron	5393649	5393765	.	+	.	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	CDS	5393766	5393842	0.98	+	0	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	exon	5393766	5393842	.	+	.	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	intron	5393843	5393947	.	+	.	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	CDS	5393948	5394095	0.67	+	1	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	exon	5393948	5394095	.	+	.	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
Ledus.S1	AUGUSTUS	stop_codon	5394096	5394098	.	+	0	transcript_id "Ledus.S1G045200.t1"; gene_id "Ledus.S1G045200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2238.t1 is derived from g9101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16307860	16308653	.	-	.	Ledus.S2G212000
Ledus.S2	AUGUSTUS	transcript	16307860	16308653	.	-	.	transcript_id "Ledus.S2G212000.t1"; gene_id "Ledus.S2G212000"
Ledus.S2	AUGUSTUS	stop_codon	16307857	16307859	.	-	0	transcript_id "Ledus.S2G212000.t1"; gene_id "Ledus.S2G212000"
Ledus.S2	AUGUSTUS	CDS	16307860	16308176	1	-	2	transcript_id "Ledus.S2G212000.t1"; gene_id "Ledus.S2G212000"
Ledus.S2	AUGUSTUS	exon	16307860	16308176	.	-	.	transcript_id "Ledus.S2G212000.t1"; gene_id "Ledus.S2G212000"
Ledus.S2	AUGUSTUS	intron	16308177	16308323	.	-	.	transcript_id "Ledus.S2G212000.t1"; gene_id "Ledus.S2G212000"
Ledus.S2	AUGUSTUS	CDS	16308324	16308384	0.82	-	0	transcript_id "Ledus.S2G212000.t1"; gene_id "Ledus.S2G212000"
Ledus.S2	AUGUSTUS	exon	16308324	16308384	.	-	.	transcript_id "Ledus.S2G212000.t1"; gene_id "Ledus.S2G212000"
Ledus.S2	AUGUSTUS	intron	16308385	16308452	.	-	.	transcript_id "Ledus.S2G212000.t1"; gene_id "Ledus.S2G212000"
Ledus.S2	AUGUSTUS	CDS	16308453	16308653	0.84	-	0	transcript_id "Ledus.S2G212000.t1"; gene_id "Ledus.S2G212000"
Ledus.S2	AUGUSTUS	exon	16308453	16308653	.	-	.	transcript_id "Ledus.S2G212000.t1"; gene_id "Ledus.S2G212000"
Ledus.S2	AUGUSTUS	start_codon	16308651	16308653	.	-	0	transcript_id "Ledus.S2G212000.t1"; gene_id "Ledus.S2G212000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8395.t1 is derived from g13067.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11468202	11469563	.	-	.	Ledus.S5G117300
Ledus.S5	AUGUSTUS	transcript	11468202	11469563	.	-	.	transcript_id "Ledus.S5G117300.t1"; gene_id "Ledus.S5G117300"
Ledus.S5	AUGUSTUS	stop_codon	11468199	11468201	.	-	0	transcript_id "Ledus.S5G117300.t1"; gene_id "Ledus.S5G117300"
Ledus.S5	AUGUSTUS	CDS	11468202	11469563	0.43	-	0	transcript_id "Ledus.S5G117300.t1"; gene_id "Ledus.S5G117300"
Ledus.S5	AUGUSTUS	exon	11468202	11469563	.	-	.	transcript_id "Ledus.S5G117300.t1"; gene_id "Ledus.S5G117300"
Ledus.S5	AUGUSTUS	start_codon	11469561	11469563	.	-	0	transcript_id "Ledus.S5G117300.t1"; gene_id "Ledus.S5G117300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7186.t1 is derived from g6717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	2039152	2040309	.	+	.	Ledus.C7G024700
Ledus.C7	AUGUSTUS	transcript	2039152	2040309	.	+	.	transcript_id "Ledus.C7G024700.t1"; gene_id "Ledus.C7G024700"
Ledus.C7	AUGUSTUS	start_codon	2039152	2039154	.	+	0	transcript_id "Ledus.C7G024700.t1"; gene_id "Ledus.C7G024700"
Ledus.C7	AUGUSTUS	CDS	2039152	2040309	0.52	+	0	transcript_id "Ledus.C7G024700.t1"; gene_id "Ledus.C7G024700"
Ledus.C7	AUGUSTUS	exon	2039152	2040309	.	+	.	transcript_id "Ledus.C7G024700.t1"; gene_id "Ledus.C7G024700"
Ledus.C7	AUGUSTUS	stop_codon	2040310	2040312	.	+	0	transcript_id "Ledus.C7G024700.t1"; gene_id "Ledus.C7G024700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9313.t1 is derived from g10343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6005482	6008420	.	-	.	Ledus.S3G079000
Ledus.S3	AUGUSTUS	transcript	6005482	6008420	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	stop_codon	6005479	6005481	.	-	0	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	CDS	6005482	6005778	1	-	0	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	exon	6005482	6005778	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	intron	6005779	6005880	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	CDS	6005881	6005958	1	-	0	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	exon	6005881	6005958	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	intron	6005959	6006045	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	CDS	6006046	6006142	1	-	1	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	exon	6006046	6006142	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	intron	6006143	6006232	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	CDS	6006233	6006361	1	-	1	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	exon	6006233	6006361	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	intron	6006362	6006471	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	CDS	6006472	6006641	0.99	-	0	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	exon	6006472	6006641	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	intron	6006642	6006735	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	CDS	6006736	6007017	1	-	0	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	exon	6006736	6007017	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	intron	6007018	6007203	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	CDS	6007204	6007303	1	-	1	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	exon	6007204	6007303	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	intron	6007304	6007398	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	CDS	6007399	6007509	1	-	1	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	exon	6007399	6007509	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	intron	6007510	6007598	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	CDS	6007599	6007748	1	-	1	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	exon	6007599	6007748	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	intron	6007749	6007857	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	CDS	6007858	6007913	1	-	0	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	exon	6007858	6007913	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	intron	6007914	6008004	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	CDS	6008005	6008049	1	-	0	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	exon	6008005	6008049	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	intron	6008050	6008300	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	CDS	6008301	6008420	1	-	0	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	exon	6008301	6008420	.	-	.	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
Ledus.S3	AUGUSTUS	start_codon	6008418	6008420	.	-	0	transcript_id "Ledus.S3G079000.t1"; gene_id "Ledus.S3G079000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6238.t1 is derived from g3681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29801833	29803882	.	+	.	Ledus.S1G365900
Ledus.S1	AUGUSTUS	transcript	29801833	29803882	.	+	.	transcript_id "Ledus.S1G365900.t1"; gene_id "Ledus.S1G365900"
Ledus.S1	AUGUSTUS	start_codon	29801833	29801835	.	+	0	transcript_id "Ledus.S1G365900.t1"; gene_id "Ledus.S1G365900"
Ledus.S1	AUGUSTUS	CDS	29801833	29801863	1	+	0	transcript_id "Ledus.S1G365900.t1"; gene_id "Ledus.S1G365900"
Ledus.S1	AUGUSTUS	exon	29801833	29801863	.	+	.	transcript_id "Ledus.S1G365900.t1"; gene_id "Ledus.S1G365900"
Ledus.S1	AUGUSTUS	intron	29801864	29802011	.	+	.	transcript_id "Ledus.S1G365900.t1"; gene_id "Ledus.S1G365900"
Ledus.S1	AUGUSTUS	CDS	29802012	29803882	0.91	+	2	transcript_id "Ledus.S1G365900.t1"; gene_id "Ledus.S1G365900"
Ledus.S1	AUGUSTUS	exon	29802012	29803882	.	+	.	transcript_id "Ledus.S1G365900.t1"; gene_id "Ledus.S1G365900"
Ledus.S1	AUGUSTUS	stop_codon	29803883	29803885	.	+	0	transcript_id "Ledus.S1G365900.t1"; gene_id "Ledus.S1G365900"
# This transcript jg4207.t2 is derived from g1643.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4208.t1 is derived from g1644.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15475126	15477380	.	+	.	Ledus.S1G162900
Ledus.S1	AUGUSTUS	transcript	15475126	15477380	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	start_codon	15475126	15475128	.	+	0	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	CDS	15475126	15475210	0.98	+	0	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	exon	15475126	15475210	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	intron	15475211	15475841	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	CDS	15475842	15476009	1	+	2	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	exon	15475842	15476009	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	intron	15476010	15476145	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	CDS	15476146	15476193	1	+	2	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	exon	15476146	15476193	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	intron	15476194	15476341	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	CDS	15476342	15476430	1	+	2	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	exon	15476342	15476430	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	intron	15476431	15476535	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	CDS	15476536	15476613	0.97	+	0	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	exon	15476536	15476613	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	intron	15476614	15476720	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	CDS	15476721	15476924	0.99	+	0	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	exon	15476721	15476924	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	intron	15476925	15477111	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	CDS	15477112	15477189	1	+	0	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	exon	15477112	15477189	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	intron	15477190	15477314	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	CDS	15477315	15477380	1	+	0	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	exon	15477315	15477380	.	+	.	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
Ledus.S1	AUGUSTUS	stop_codon	15477381	15477383	.	+	0	transcript_id "Ledus.S1G162900.t1"; gene_id "Ledus.S1G162900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8884.t1 is derived from g9914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2804602	2807172	.	-	.	Ledus.S3G036100
Ledus.S3	AUGUSTUS	transcript	2804602	2807172	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	stop_codon	2804599	2804601	.	-	0	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	CDS	2804602	2804711	0.91	-	2	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	exon	2804602	2804711	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	intron	2804712	2804860	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	CDS	2804861	2805234	0.47	-	1	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	exon	2804861	2805234	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	intron	2805235	2805329	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	CDS	2805330	2805424	1	-	0	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	exon	2805330	2805424	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	intron	2805425	2805494	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	CDS	2805495	2805695	0.6	-	0	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	exon	2805495	2805695	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	intron	2805696	2805871	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	CDS	2805872	2805880	0.8	-	0	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	exon	2805872	2805880	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	intron	2805881	2806194	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	CDS	2806195	2806300	1	-	1	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	exon	2806195	2806300	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	intron	2806301	2806386	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	CDS	2806387	2806430	0.99	-	0	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	exon	2806387	2806430	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	intron	2806431	2806582	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	CDS	2806583	2807082	0.57	-	2	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	exon	2806583	2807082	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	intron	2807083	2807162	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	CDS	2807163	2807172	0.48	-	0	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	exon	2807163	2807172	.	-	.	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
Ledus.S3	AUGUSTUS	start_codon	2807170	2807172	.	-	0	transcript_id "Ledus.S3G036100.t1"; gene_id "Ledus.S3G036100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7628.t1 is derived from g12299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4540647	4541372	.	+	.	Ledus.S5G040600
Ledus.S5	AUGUSTUS	transcript	4540647	4541372	.	+	.	transcript_id "Ledus.S5G040600.t1"; gene_id "Ledus.S5G040600"
Ledus.S5	AUGUSTUS	start_codon	4540647	4540649	.	+	0	transcript_id "Ledus.S5G040600.t1"; gene_id "Ledus.S5G040600"
Ledus.S5	AUGUSTUS	CDS	4540647	4541372	0.87	+	0	transcript_id "Ledus.S5G040600.t1"; gene_id "Ledus.S5G040600"
Ledus.S5	AUGUSTUS	exon	4540647	4541372	.	+	.	transcript_id "Ledus.S5G040600.t1"; gene_id "Ledus.S5G040600"
Ledus.S5	AUGUSTUS	stop_codon	4541373	4541375	.	+	0	transcript_id "Ledus.S5G040600.t1"; gene_id "Ledus.S5G040600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7467.t1 is derived from g12138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2958261	2961443	.	+	.	Ledus.S5G024500
Ledus.S5	AUGUSTUS	transcript	2958261	2961443	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	start_codon	2958261	2958263	.	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2958261	2958419	1	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2958261	2958419	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2958420	2958599	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2958600	2958662	1	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2958600	2958662	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2958663	2958815	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2958816	2958887	1	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2958816	2958887	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2958888	2958988	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2958989	2959096	0.99	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2958989	2959096	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2959097	2959204	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2959205	2959285	0.82	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2959205	2959285	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2959286	2959392	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2959393	2959446	1	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2959393	2959446	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2959447	2959713	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2959714	2959839	1	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2959714	2959839	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2959840	2959977	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2959978	2960067	1	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2959978	2960067	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2960068	2960266	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2960267	2960389	1	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2960267	2960389	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2960390	2960528	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2960529	2960648	1	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2960529	2960648	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2960649	2960742	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2960743	2960859	1	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2960743	2960859	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2960860	2961018	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2961019	2961075	1	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2961019	2961075	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2961076	2961166	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2961167	2961241	1	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2961167	2961241	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	intron	2961242	2961338	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	CDS	2961339	2961443	0.89	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	exon	2961339	2961443	.	+	.	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
Ledus.S5	AUGUSTUS	stop_codon	2961444	2961446	.	+	0	transcript_id "Ledus.S5G024500.t1"; gene_id "Ledus.S5G024500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5275.t1 is derived from g2714.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22825593	22830076	.	+	.	Ledus.S1G269600
Ledus.S1	AUGUSTUS	transcript	22825593	22830076	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	start_codon	22825593	22825595	.	+	0	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	CDS	22825593	22825637	0.86	+	0	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	exon	22825593	22825637	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	intron	22825638	22825724	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	CDS	22825725	22825904	1	+	0	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	exon	22825725	22825904	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	intron	22825905	22825982	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	CDS	22825983	22826589	1	+	0	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	exon	22825983	22826589	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	intron	22826590	22826683	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	CDS	22826684	22826944	0.99	+	2	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	exon	22826684	22826944	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	intron	22826945	22827026	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	CDS	22827027	22827124	1	+	2	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	exon	22827027	22827124	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	intron	22827125	22827199	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	CDS	22827200	22827455	0.99	+	0	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	exon	22827200	22827455	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	intron	22827456	22827544	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	CDS	22827545	22827682	1	+	2	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	exon	22827545	22827682	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	intron	22827683	22827772	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	CDS	22827773	22828100	1	+	2	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	exon	22827773	22828100	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	intron	22828101	22828199	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	CDS	22828200	22828399	1	+	1	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	exon	22828200	22828399	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	intron	22828400	22828494	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	CDS	22828495	22828640	1	+	2	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	exon	22828495	22828640	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	intron	22828641	22828722	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	CDS	22828723	22828791	1	+	0	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	exon	22828723	22828791	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	intron	22828792	22828876	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	CDS	22828877	22830076	0.9	+	0	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	exon	22828877	22830076	.	+	.	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
Ledus.S1	AUGUSTUS	stop_codon	22830077	22830079	.	+	0	transcript_id "Ledus.S1G269600.t1"; gene_id "Ledus.S1G269600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg25.t1 is derived from g6454.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C17	AUGUSTUS	gene	55599	56990	.	+	.	Ledus.C17G000300
Ledus.C17	AUGUSTUS	transcript	55599	56990	.	+	.	transcript_id "Ledus.C17G000300.t1"; gene_id "Ledus.C17G000300"
Ledus.C17	AUGUSTUS	start_codon	55599	55601	.	+	0	transcript_id "Ledus.C17G000300.t1"; gene_id "Ledus.C17G000300"
Ledus.C17	AUGUSTUS	CDS	55599	56990	0.52	+	0	transcript_id "Ledus.C17G000300.t1"; gene_id "Ledus.C17G000300"
Ledus.C17	AUGUSTUS	exon	55599	56990	.	+	.	transcript_id "Ledus.C17G000300.t1"; gene_id "Ledus.C17G000300"
Ledus.C17	AUGUSTUS	stop_codon	56991	56993	.	+	0	transcript_id "Ledus.C17G000300.t1"; gene_id "Ledus.C17G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5244.t1 is derived from g2683.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22644844	22656670	.	-	.	Ledus.S1G266500
Ledus.S1	AUGUSTUS	transcript	22644844	22656670	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	stop_codon	22644841	22644843	.	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22644844	22644947	1	-	2	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22644844	22644947	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22644948	22645046	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22645047	22645078	1	-	1	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22645047	22645078	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22645079	22645167	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22645168	22645256	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22645168	22645256	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22645257	22645378	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22645379	22645564	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22645379	22645564	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22645565	22645708	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22645709	22645854	1	-	2	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22645709	22645854	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22645855	22646061	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22646062	22646226	1	-	2	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22646062	22646226	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22646227	22646367	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22646368	22646506	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22646368	22646506	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22646507	22646638	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22646639	22646716	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22646639	22646716	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22646717	22646838	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22646839	22646907	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22646839	22646907	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22646908	22647031	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22647032	22647151	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22647032	22647151	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22647152	22647341	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22647342	22647425	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22647342	22647425	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22647426	22647664	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22647665	22647736	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22647665	22647736	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22647737	22647824	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22647825	22647892	1	-	2	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22647825	22647892	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22647893	22648020	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22648021	22648075	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22648021	22648075	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22648076	22648195	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22648196	22648288	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22648196	22648288	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22648289	22648415	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22648416	22648493	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22648416	22648493	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22648494	22648628	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22648629	22648709	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22648629	22648709	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22648710	22648850	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22648851	22648970	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22648851	22648970	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22648971	22649071	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22649072	22649199	0.98	-	2	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22649072	22649199	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22649200	22649400	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22649401	22649512	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22649401	22649512	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22649513	22649602	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22649603	22649701	0.97	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22649603	22649701	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22649702	22649823	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22649824	22649898	0.95	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22649824	22649898	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22649899	22650002	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22650003	22650206	0.99	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22650003	22650206	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22650207	22651066	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22651067	22651661	1	-	1	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22651067	22651661	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22651662	22651819	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22651820	22651828	1	-	1	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22651820	22651828	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22651829	22652194	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22652195	22652223	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22652195	22652223	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22652224	22652356	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22652357	22652439	1	-	2	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22652357	22652439	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22652440	22652531	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22652532	22652625	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22652532	22652625	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22652626	22652763	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22652764	22652898	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22652764	22652898	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22652899	22653062	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22653063	22653095	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22653063	22653095	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22653096	22653219	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22653220	22653314	1	-	2	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22653220	22653314	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22653315	22653412	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22653413	22653458	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22653413	22653458	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22653459	22653584	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22653585	22653665	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22653585	22653665	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22653666	22653776	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22653777	22653830	0.79	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22653777	22653830	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22653831	22653962	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22653963	22654105	1	-	2	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22653963	22654105	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22654106	22654414	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22654415	22654563	0.66	-	1	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22654415	22654563	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22654564	22654876	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22654877	22654980	0.6	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22654877	22654980	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22654981	22655226	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22655227	22655255	0.79	-	2	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22655227	22655255	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22655256	22655444	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22655445	22655516	1	-	2	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22655445	22655516	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22655517	22655666	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22655667	22655736	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22655667	22655736	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22655737	22655872	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22655873	22656055	1	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22655873	22656055	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	intron	22656056	22656337	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	CDS	22656338	22656670	0.94	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	exon	22656338	22656670	.	-	.	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
Ledus.S1	AUGUSTUS	start_codon	22656668	22656670	.	-	0	transcript_id "Ledus.S1G266500.t1"; gene_id "Ledus.S1G266500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7344.t1 is derived from g12015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1309425	1311096	.	+	.	Ledus.S5G012200
Ledus.S5	AUGUSTUS	transcript	1309425	1311096	.	+	.	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	start_codon	1309425	1309427	.	+	0	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	CDS	1309425	1309845	0.47	+	0	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	exon	1309425	1309845	.	+	.	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	intron	1309846	1309934	.	+	.	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	CDS	1309935	1310117	1	+	2	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	exon	1309935	1310117	.	+	.	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	intron	1310118	1310203	.	+	.	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	CDS	1310204	1310364	0.99	+	2	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	exon	1310204	1310364	.	+	.	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	intron	1310365	1310460	.	+	.	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	CDS	1310461	1310731	1	+	0	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	exon	1310461	1310731	.	+	.	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	intron	1310732	1310821	.	+	.	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	CDS	1310822	1311096	0.99	+	2	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	exon	1310822	1311096	.	+	.	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
Ledus.S5	AUGUSTUS	stop_codon	1311097	1311099	.	+	0	transcript_id "Ledus.S5G012200.t1"; gene_id "Ledus.S5G012200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12129.t1 is derived from g5748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9676260	9677171	.	+	.	Ledus.S4G128500
Ledus.S4	AUGUSTUS	transcript	9676260	9677171	.	+	.	transcript_id "Ledus.S4G128500.t1"; gene_id "Ledus.S4G128500"
Ledus.S4	AUGUSTUS	start_codon	9676260	9676262	.	+	0	transcript_id "Ledus.S4G128500.t1"; gene_id "Ledus.S4G128500"
Ledus.S4	AUGUSTUS	CDS	9676260	9677171	0.48	+	0	transcript_id "Ledus.S4G128500.t1"; gene_id "Ledus.S4G128500"
Ledus.S4	AUGUSTUS	exon	9676260	9677171	.	+	.	transcript_id "Ledus.S4G128500.t1"; gene_id "Ledus.S4G128500"
Ledus.S4	AUGUSTUS	stop_codon	9677172	9677174	.	+	0	transcript_id "Ledus.S4G128500.t1"; gene_id "Ledus.S4G128500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7726.t1 is derived from g12397.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5589577	5590656	.	-	.	Ledus.S5G050400
Ledus.S5	AUGUSTUS	transcript	5589577	5590656	.	-	.	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	stop_codon	5589574	5589576	.	-	0	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	CDS	5589577	5589656	1	-	2	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	exon	5589577	5589656	.	-	.	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	intron	5589657	5590109	.	-	.	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	CDS	5590110	5590151	1	-	2	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	exon	5590110	5590151	.	-	.	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	intron	5590152	5590242	.	-	.	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	CDS	5590243	5590527	0.99	-	2	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	exon	5590243	5590527	.	-	.	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	intron	5590528	5590643	.	-	.	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	CDS	5590644	5590656	0.99	-	0	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	exon	5590644	5590656	.	-	.	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
Ledus.S5	AUGUSTUS	start_codon	5590654	5590656	.	-	0	transcript_id "Ledus.S5G050400.t1"; gene_id "Ledus.S5G050400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3114.t1 is derived from g549.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6116928	6119249	.	-	.	Ledus.S1G053500
Ledus.S1	AUGUSTUS	transcript	6116928	6119249	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	stop_codon	6116925	6116927	.	-	0	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6116928	6117037	0.83	-	2	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6116928	6117037	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	intron	6117038	6117168	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6117169	6117280	1	-	0	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6117169	6117280	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	intron	6117281	6117377	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6117378	6117458	1	-	0	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6117378	6117458	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	intron	6117459	6117583	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6117584	6117596	0.99	-	1	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6117584	6117596	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	intron	6117597	6117695	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6117696	6117760	1	-	0	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6117696	6117760	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	intron	6117761	6117861	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6117862	6117954	1	-	0	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6117862	6117954	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	intron	6117955	6118046	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6118047	6118119	1	-	1	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6118047	6118119	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	intron	6118120	6118214	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6118215	6118294	1	-	0	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6118215	6118294	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	intron	6118295	6118382	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6118383	6118436	1	-	0	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6118383	6118436	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	intron	6118437	6118514	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6118515	6118616	1	-	0	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6118515	6118616	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	intron	6118617	6118701	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6118702	6118893	1	-	0	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6118702	6118893	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	intron	6118894	6118985	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6118986	6119054	1	-	0	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6118986	6119054	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	intron	6119055	6119129	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	CDS	6119130	6119249	0.98	-	0	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	exon	6119130	6119249	.	-	.	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
Ledus.S1	AUGUSTUS	start_codon	6119247	6119249	.	-	0	transcript_id "Ledus.S1G053500.t1"; gene_id "Ledus.S1G053500"
# This transcript jg2966.t2 is derived from g401.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2967.t1 is derived from g402.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4991360	4995957	.	-	.	Ledus.S1G038800
Ledus.S1	AUGUSTUS	transcript	4991360	4995957	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	stop_codon	4991357	4991359	.	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	CDS	4991360	4991434	1	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	exon	4991360	4991434	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	intron	4991435	4991521	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	CDS	4991522	4991673	1	-	2	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	exon	4991522	4991673	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	intron	4991674	4991772	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	CDS	4991773	4991830	1	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	exon	4991773	4991830	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	intron	4991831	4991929	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	CDS	4991930	4992019	1	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	exon	4991930	4992019	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	intron	4992020	4992120	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	CDS	4992121	4992231	0.94	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	exon	4992121	4992231	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	intron	4992232	4992322	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	CDS	4992323	4992388	1	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	exon	4992323	4992388	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	intron	4992389	4992484	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	CDS	4992485	4992628	0.92	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	exon	4992485	4992628	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	intron	4992629	4992731	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	CDS	4992732	4992863	0.91	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	exon	4992732	4992863	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	intron	4992864	4992971	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	CDS	4992972	4993058	0.91	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	exon	4992972	4993058	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	intron	4993059	4993235	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	CDS	4993236	4994282	0.53	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	exon	4993236	4994282	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	intron	4994283	4994374	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	CDS	4994375	4995379	0.46	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	exon	4994375	4995379	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	intron	4995380	4995477	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	CDS	4995478	4995957	0.83	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	exon	4995478	4995957	.	-	.	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
Ledus.S1	AUGUSTUS	start_codon	4995955	4995957	.	-	0	transcript_id "Ledus.S1G038800.t1"; gene_id "Ledus.S1G038800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2493.t1 is derived from g9356.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18468982	18469335	.	-	.	Ledus.S2G237500
Ledus.S2	AUGUSTUS	transcript	18468982	18469335	.	-	.	transcript_id "Ledus.S2G237500.t1"; gene_id "Ledus.S2G237500"
Ledus.S2	AUGUSTUS	stop_codon	18468979	18468981	.	-	0	transcript_id "Ledus.S2G237500.t1"; gene_id "Ledus.S2G237500"
Ledus.S2	AUGUSTUS	CDS	18468982	18469335	0.68	-	0	transcript_id "Ledus.S2G237500.t1"; gene_id "Ledus.S2G237500"
Ledus.S2	AUGUSTUS	exon	18468982	18469335	.	-	.	transcript_id "Ledus.S2G237500.t1"; gene_id "Ledus.S2G237500"
Ledus.S2	AUGUSTUS	start_codon	18469333	18469335	.	-	0	transcript_id "Ledus.S2G237500.t1"; gene_id "Ledus.S2G237500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12585.t1 is derived from g6207.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13003051	13005418	.	+	.	Ledus.S4G174100
Ledus.S4	AUGUSTUS	transcript	13003051	13005418	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	start_codon	13003051	13003053	.	+	0	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13003051	13003342	0.59	+	0	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13003051	13003342	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13003343	13003420	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13003421	13003446	0.63	+	2	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13003421	13003446	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13003447	13003667	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13003668	13003863	1	+	0	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13003668	13003863	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13003864	13004122	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13004123	13004298	1	+	2	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13004123	13004298	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13004299	13004399	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13004400	13004709	0.95	+	0	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13004400	13004709	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13004710	13004877	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13004878	13004939	0.97	+	2	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13004878	13004939	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13004940	13005098	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13005099	13005180	0.97	+	0	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13005099	13005180	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13005181	13005272	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13005273	13005418	0.68	+	2	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13005273	13005418	.	+	.	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	stop_codon	13005419	13005421	.	+	0	transcript_id "Ledus.S4G174100.t1"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	transcript	13003051	13005418	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	start_codon	13003051	13003053	.	+	0	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13003051	13003342	0.57	+	0	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13003051	13003342	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13003343	13003420	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13003421	13003446	0.62	+	2	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13003421	13003446	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13003447	13003667	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13003668	13003863	1	+	0	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13003668	13003863	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13003864	13004122	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13004123	13004298	1	+	2	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13004123	13004298	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13004299	13004399	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13004400	13004709	0.88	+	0	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13004400	13004709	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13004710	13004877	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13004878	13004939	0.82	+	2	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13004878	13004939	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13004940	13005113	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13005114	13005180	0.66	+	0	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13005114	13005180	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	intron	13005181	13005272	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	CDS	13005273	13005418	0.52	+	2	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	exon	13005273	13005418	.	+	.	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
Ledus.S4	AUGUSTUS	stop_codon	13005419	13005421	.	+	0	transcript_id "Ledus.S4G174100.t2"; gene_id "Ledus.S4G174100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1496.t1 is derived from g8357.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10588005	10588799	.	-	.	Ledus.S2G137800
Ledus.S2	AUGUSTUS	transcript	10588005	10588799	.	-	.	transcript_id "Ledus.S2G137800.t1"; gene_id "Ledus.S2G137800"
Ledus.S2	AUGUSTUS	stop_codon	10588002	10588004	.	-	0	transcript_id "Ledus.S2G137800.t1"; gene_id "Ledus.S2G137800"
Ledus.S2	AUGUSTUS	CDS	10588005	10588016	0.91	-	0	transcript_id "Ledus.S2G137800.t1"; gene_id "Ledus.S2G137800"
Ledus.S2	AUGUSTUS	exon	10588005	10588016	.	-	.	transcript_id "Ledus.S2G137800.t1"; gene_id "Ledus.S2G137800"
Ledus.S2	AUGUSTUS	intron	10588017	10588147	.	-	.	transcript_id "Ledus.S2G137800.t1"; gene_id "Ledus.S2G137800"
Ledus.S2	AUGUSTUS	CDS	10588148	10588257	0.82	-	2	transcript_id "Ledus.S2G137800.t1"; gene_id "Ledus.S2G137800"
Ledus.S2	AUGUSTUS	exon	10588148	10588257	.	-	.	transcript_id "Ledus.S2G137800.t1"; gene_id "Ledus.S2G137800"
Ledus.S2	AUGUSTUS	intron	10588258	10588561	.	-	.	transcript_id "Ledus.S2G137800.t1"; gene_id "Ledus.S2G137800"
Ledus.S2	AUGUSTUS	CDS	10588562	10588799	0.77	-	0	transcript_id "Ledus.S2G137800.t1"; gene_id "Ledus.S2G137800"
Ledus.S2	AUGUSTUS	exon	10588562	10588799	.	-	.	transcript_id "Ledus.S2G137800.t1"; gene_id "Ledus.S2G137800"
Ledus.S2	AUGUSTUS	start_codon	10588797	10588799	.	-	0	transcript_id "Ledus.S2G137800.t1"; gene_id "Ledus.S2G137800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8421.t1 is derived from g13093.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11558080	11558399	.	+	.	Ledus.S5G119900
Ledus.S5	AUGUSTUS	transcript	11558080	11558399	.	+	.	transcript_id "Ledus.S5G119900.t1"; gene_id "Ledus.S5G119900"
Ledus.S5	AUGUSTUS	start_codon	11558080	11558082	.	+	0	transcript_id "Ledus.S5G119900.t1"; gene_id "Ledus.S5G119900"
Ledus.S5	AUGUSTUS	CDS	11558080	11558119	0.79	+	0	transcript_id "Ledus.S5G119900.t1"; gene_id "Ledus.S5G119900"
Ledus.S5	AUGUSTUS	exon	11558080	11558119	.	+	.	transcript_id "Ledus.S5G119900.t1"; gene_id "Ledus.S5G119900"
Ledus.S5	AUGUSTUS	intron	11558120	11558208	.	+	.	transcript_id "Ledus.S5G119900.t1"; gene_id "Ledus.S5G119900"
Ledus.S5	AUGUSTUS	CDS	11558209	11558399	0.95	+	2	transcript_id "Ledus.S5G119900.t1"; gene_id "Ledus.S5G119900"
Ledus.S5	AUGUSTUS	exon	11558209	11558399	.	+	.	transcript_id "Ledus.S5G119900.t1"; gene_id "Ledus.S5G119900"
Ledus.S5	AUGUSTUS	stop_codon	11558400	11558402	.	+	0	transcript_id "Ledus.S5G119900.t1"; gene_id "Ledus.S5G119900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1885.t1 is derived from g8748.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13185994	13186927	.	-	.	Ledus.S2G176700
Ledus.S2	AUGUSTUS	transcript	13185994	13186927	.	-	.	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	stop_codon	13185991	13185993	.	-	0	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	CDS	13185994	13186221	0.85	-	0	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	exon	13185994	13186221	.	-	.	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	intron	13186222	13186316	.	-	.	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	CDS	13186317	13186436	1	-	0	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	exon	13186317	13186436	.	-	.	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	intron	13186437	13186511	.	-	.	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	CDS	13186512	13186603	1	-	2	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	exon	13186512	13186603	.	-	.	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	intron	13186604	13186746	.	-	.	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	CDS	13186747	13186927	0.95	-	0	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	exon	13186747	13186927	.	-	.	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
Ledus.S2	AUGUSTUS	start_codon	13186925	13186927	.	-	0	transcript_id "Ledus.S2G176700.t1"; gene_id "Ledus.S2G176700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1854.t1 is derived from g8717.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12963991	12965940	.	+	.	Ledus.S2G173600
Ledus.S2	AUGUSTUS	transcript	12963991	12965940	.	+	.	transcript_id "Ledus.S2G173600.t1"; gene_id "Ledus.S2G173600"
Ledus.S2	AUGUSTUS	start_codon	12963991	12963993	.	+	0	transcript_id "Ledus.S2G173600.t1"; gene_id "Ledus.S2G173600"
Ledus.S2	AUGUSTUS	CDS	12963991	12965940	0.42	+	0	transcript_id "Ledus.S2G173600.t1"; gene_id "Ledus.S2G173600"
Ledus.S2	AUGUSTUS	exon	12963991	12965940	.	+	.	transcript_id "Ledus.S2G173600.t1"; gene_id "Ledus.S2G173600"
Ledus.S2	AUGUSTUS	stop_codon	12965941	12965943	.	+	0	transcript_id "Ledus.S2G173600.t1"; gene_id "Ledus.S2G173600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1501.t1 is derived from g8362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10606282	10607085	.	-	.	Ledus.S2G138300
Ledus.S2	AUGUSTUS	transcript	10606282	10607085	.	-	.	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	stop_codon	10606279	10606281	.	-	0	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	CDS	10606282	10606408	0.37	-	1	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	exon	10606282	10606408	.	-	.	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	intron	10606409	10606504	.	-	.	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	CDS	10606505	10606666	0.58	-	1	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	exon	10606505	10606666	.	-	.	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	intron	10606667	10606739	.	-	.	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	CDS	10606740	10606855	0.66	-	0	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	exon	10606740	10606855	.	-	.	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	intron	10606856	10606941	.	-	.	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	CDS	10606942	10607085	0.36	-	0	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	exon	10606942	10607085	.	-	.	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
Ledus.S2	AUGUSTUS	start_codon	10607083	10607085	.	-	0	transcript_id "Ledus.S2G138300.t1"; gene_id "Ledus.S2G138300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10463.t1 is derived from g11493.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15431055	15434667	.	+	.	Ledus.S3G194000
Ledus.S3	AUGUSTUS	transcript	15431055	15434667	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	start_codon	15431055	15431057	.	+	0	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	CDS	15431055	15431250	0.98	+	0	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	exon	15431055	15431250	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	intron	15431251	15432283	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	CDS	15432284	15432377	1	+	2	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	exon	15432284	15432377	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	intron	15432378	15432572	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	CDS	15432573	15432615	1	+	1	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	exon	15432573	15432615	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	intron	15432616	15432805	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	CDS	15432806	15432928	1	+	0	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	exon	15432806	15432928	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	intron	15432929	15433118	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	CDS	15433119	15433238	0.99	+	0	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	exon	15433119	15433238	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	intron	15433239	15433356	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	CDS	15433357	15433435	1	+	0	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	exon	15433357	15433435	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	intron	15433436	15433526	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	CDS	15433527	15433634	0.66	+	2	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	exon	15433527	15433634	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	intron	15433635	15433742	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	CDS	15433743	15433840	0.48	+	2	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	exon	15433743	15433840	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	intron	15433841	15433958	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	CDS	15433959	15434049	0.54	+	0	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	exon	15433959	15434049	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	intron	15434050	15434132	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	CDS	15434133	15434252	1	+	2	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	exon	15434133	15434252	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	intron	15434253	15434343	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	CDS	15434344	15434414	1	+	2	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	exon	15434344	15434414	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	intron	15434415	15434493	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	CDS	15434494	15434667	1	+	0	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	exon	15434494	15434667	.	+	.	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
Ledus.S3	AUGUSTUS	stop_codon	15434668	15434670	.	+	0	transcript_id "Ledus.S3G194000.t1"; gene_id "Ledus.S3G194000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13128.t1 is derived from g6938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	6603427	6604202	.	+	.	Ledus.S6G019000
Ledus.S6	AUGUSTUS	transcript	6603427	6604202	.	+	.	transcript_id "Ledus.S6G019000.t1"; gene_id "Ledus.S6G019000"
Ledus.S6	AUGUSTUS	start_codon	6603427	6603429	.	+	0	transcript_id "Ledus.S6G019000.t1"; gene_id "Ledus.S6G019000"
Ledus.S6	AUGUSTUS	CDS	6603427	6603804	0.38	+	0	transcript_id "Ledus.S6G019000.t1"; gene_id "Ledus.S6G019000"
Ledus.S6	AUGUSTUS	exon	6603427	6603804	.	+	.	transcript_id "Ledus.S6G019000.t1"; gene_id "Ledus.S6G019000"
Ledus.S6	AUGUSTUS	intron	6603805	6604130	.	+	.	transcript_id "Ledus.S6G019000.t1"; gene_id "Ledus.S6G019000"
Ledus.S6	AUGUSTUS	CDS	6604131	6604202	0.73	+	0	transcript_id "Ledus.S6G019000.t1"; gene_id "Ledus.S6G019000"
Ledus.S6	AUGUSTUS	exon	6604131	6604202	.	+	.	transcript_id "Ledus.S6G019000.t1"; gene_id "Ledus.S6G019000"
Ledus.S6	AUGUSTUS	stop_codon	6604203	6604205	.	+	0	transcript_id "Ledus.S6G019000.t1"; gene_id "Ledus.S6G019000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12222.t1 is derived from g5841.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10486574	10487587	.	-	.	Ledus.S4G137800
Ledus.S4	AUGUSTUS	transcript	10486574	10487587	.	-	.	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	stop_codon	10486571	10486573	.	-	0	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	CDS	10486574	10487023	1	-	0	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	exon	10486574	10487023	.	-	.	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	intron	10487024	10487113	.	-	.	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	CDS	10487114	10487182	1	-	0	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	exon	10487114	10487182	.	-	.	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	intron	10487183	10487260	.	-	.	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	CDS	10487261	10487353	1	-	0	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	exon	10487261	10487353	.	-	.	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	intron	10487354	10487491	.	-	.	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	CDS	10487492	10487587	0.97	-	0	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	exon	10487492	10487587	.	-	.	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
Ledus.S4	AUGUSTUS	start_codon	10487585	10487587	.	-	0	transcript_id "Ledus.S4G137800.t1"; gene_id "Ledus.S4G137800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5963.t1 is derived from g3406.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28059017	28060027	.	+	.	Ledus.S1G338400
Ledus.S1	AUGUSTUS	transcript	28059017	28060027	.	+	.	transcript_id "Ledus.S1G338400.t1"; gene_id "Ledus.S1G338400"
Ledus.S1	AUGUSTUS	start_codon	28059017	28059019	.	+	0	transcript_id "Ledus.S1G338400.t1"; gene_id "Ledus.S1G338400"
Ledus.S1	AUGUSTUS	CDS	28059017	28060027	0.91	+	0	transcript_id "Ledus.S1G338400.t1"; gene_id "Ledus.S1G338400"
Ledus.S1	AUGUSTUS	exon	28059017	28060027	.	+	.	transcript_id "Ledus.S1G338400.t1"; gene_id "Ledus.S1G338400"
Ledus.S1	AUGUSTUS	stop_codon	28060028	28060030	.	+	0	transcript_id "Ledus.S1G338400.t1"; gene_id "Ledus.S1G338400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg11313.t1 is derived from g4931.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3503582	3508441	.	-	.	Ledus.S4G046900
Ledus.S4	AUGUSTUS	transcript	3505328	3508441	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	stop_codon	3505325	3505327	.	-	0	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3505328	3505354	0.99	-	0	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3505328	3505354	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3505355	3505449	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3505450	3505488	0.99	-	0	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3505450	3505488	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3505489	3505771	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3505772	3505790	0.94	-	1	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3505772	3505790	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3505791	3505941	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3505942	3506014	0.63	-	2	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3505942	3506014	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3506015	3506377	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3506378	3506546	0.54	-	0	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3506378	3506546	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3506547	3506625	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3506626	3506893	1	-	1	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3506626	3506893	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3506894	3507452	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3507453	3507622	1	-	0	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3507453	3507622	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3507623	3507710	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3507711	3507860	1	-	0	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3507711	3507860	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3507861	3507954	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3507955	3508036	1	-	1	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3507955	3508036	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3508037	3508196	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3508197	3508261	0.85	-	0	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3508197	3508261	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3508262	3508351	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3508352	3508441	0.81	-	0	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3508352	3508441	.	-	.	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	start_codon	3508439	3508441	.	-	0	transcript_id "Ledus.S4G046900.t1"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	transcript	3503582	3508441	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	stop_codon	3503579	3503581	.	-	0	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3503582	3503611	0.71	-	0	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3503582	3503611	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3503612	3503767	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3503768	3503843	0.66	-	1	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3503768	3503843	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3503844	3504043	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3504044	3504048	0.66	-	0	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3504044	3504048	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3504049	3504248	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3504249	3504285	0.77	-	1	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3504249	3504285	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3504286	3504514	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3504515	3504569	0.76	-	2	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3504515	3504569	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3504570	3504996	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3504997	3505080	0.78	-	2	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3504997	3505080	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3505081	3505155	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3505156	3505160	0.78	-	1	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3505156	3505160	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3505161	3505296	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3505297	3505354	0.99	-	2	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3505297	3505354	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3505355	3505449	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3505450	3505488	1	-	2	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3505450	3505488	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3505489	3506095	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3506096	3506546	0.91	-	0	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3506096	3506546	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3506547	3506625	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3506626	3506893	0.99	-	1	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3506626	3506893	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3506894	3507452	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3507453	3507622	1	-	0	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3507453	3507622	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3507623	3507710	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3507711	3507860	1	-	0	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3507711	3507860	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3507861	3507954	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3507955	3508036	1	-	1	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3507955	3508036	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3508037	3508196	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3508197	3508261	0.85	-	0	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3508197	3508261	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3508262	3508351	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3508352	3508441	0.81	-	0	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3508352	3508441	.	-	.	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	start_codon	3508439	3508441	.	-	0	transcript_id "Ledus.S4G046900.t2"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	transcript	3503582	3508441	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	stop_codon	3503579	3503581	.	-	0	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3503582	3503611	0.68	-	0	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3503582	3503611	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3503612	3503767	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3503768	3503843	0.6	-	1	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3503768	3503843	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3503844	3504043	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3504044	3504048	0.6	-	0	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3504044	3504048	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3504049	3504248	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3504249	3504285	0.84	-	1	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3504249	3504285	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3504286	3504514	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3504515	3504569	0.84	-	2	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3504515	3504569	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3504570	3504996	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3504997	3505080	0.84	-	2	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3504997	3505080	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3505081	3505155	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3505156	3505160	0.84	-	1	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3505156	3505160	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3505161	3505296	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3505297	3505354	1	-	2	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3505297	3505354	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3505355	3505449	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3505450	3505488	1	-	2	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3505450	3505488	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3505489	3506095	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3506096	3506546	0.89	-	0	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3506096	3506546	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3506547	3506625	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3506626	3506686	0.93	-	1	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3506626	3506686	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3506687	3506853	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3506854	3506893	0.63	-	2	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3506854	3506893	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3506894	3507188	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3507189	3507250	0.59	-	1	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3507189	3507250	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3507251	3507452	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3507453	3507622	1	-	0	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3507453	3507622	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3507623	3507710	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3507711	3507860	1	-	0	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3507711	3507860	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3507861	3507954	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3507955	3508036	1	-	1	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3507955	3508036	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3508037	3508196	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3508197	3508261	0.87	-	0	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3508197	3508261	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	intron	3508262	3508351	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	CDS	3508352	3508441	0.84	-	0	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	exon	3508352	3508441	.	-	.	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
Ledus.S4	AUGUSTUS	start_codon	3508439	3508441	.	-	0	transcript_id "Ledus.S4G046900.t3"; gene_id "Ledus.S4G046900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg938.t1 is derived from g7799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6238339	6240252	.	-	.	Ledus.S2G082000
Ledus.S2	AUGUSTUS	transcript	6238339	6240252	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	stop_codon	6238336	6238338	.	-	0	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	CDS	6238339	6238440	1	-	0	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	exon	6238339	6238440	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	intron	6238441	6238525	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	CDS	6238526	6238673	1	-	1	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	exon	6238526	6238673	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	intron	6238674	6238757	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	CDS	6238758	6238802	0.99	-	1	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	exon	6238758	6238802	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	intron	6238803	6238915	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	CDS	6238916	6239030	0.99	-	2	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	exon	6238916	6239030	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	intron	6239031	6239144	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	CDS	6239145	6239263	0.99	-	1	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	exon	6239145	6239263	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	intron	6239264	6239357	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	CDS	6239358	6239402	1	-	1	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	exon	6239358	6239402	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	intron	6239403	6239485	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	CDS	6239486	6239525	1	-	2	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	exon	6239486	6239525	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	intron	6239526	6239624	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	CDS	6239625	6239731	0.96	-	1	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	exon	6239625	6239731	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	intron	6239732	6239981	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	CDS	6239982	6239993	0.41	-	1	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	exon	6239982	6239993	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	intron	6239994	6240187	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	CDS	6240188	6240252	0.77	-	0	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	exon	6240188	6240252	.	-	.	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
Ledus.S2	AUGUSTUS	start_codon	6240250	6240252	.	-	0	transcript_id "Ledus.S2G082000.t1"; gene_id "Ledus.S2G082000"
# This transcript jg6763.t2 is derived from g4206.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6764.t1 is derived from g4207.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34006054	34009954	.	-	.	Ledus.S1G418500
Ledus.S1	AUGUSTUS	transcript	34006054	34009954	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	stop_codon	34006051	34006053	.	-	0	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	CDS	34006054	34006419	0.61	-	0	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	exon	34006054	34006419	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	intron	34006420	34006521	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	CDS	34006522	34006654	1	-	1	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	exon	34006522	34006654	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	intron	34006655	34006756	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	CDS	34006757	34006952	1	-	2	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	exon	34006757	34006952	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	intron	34006953	34007045	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	CDS	34007046	34007114	1	-	2	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	exon	34007046	34007114	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	intron	34007115	34007201	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	CDS	34007202	34007328	1	-	0	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	exon	34007202	34007328	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	intron	34007329	34007428	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	CDS	34007429	34007661	1	-	2	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	exon	34007429	34007661	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	intron	34007662	34007765	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	CDS	34007766	34008007	0.98	-	1	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	exon	34007766	34008007	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	intron	34008008	34008103	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	CDS	34008104	34008178	1	-	1	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	exon	34008104	34008178	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	intron	34008179	34008261	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	CDS	34008262	34008333	1	-	1	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	exon	34008262	34008333	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	intron	34008334	34008433	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	CDS	34008434	34008566	1	-	2	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	exon	34008434	34008566	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	intron	34008567	34008646	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	CDS	34008647	34009783	1	-	2	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	exon	34008647	34009783	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	intron	34009784	34009863	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	CDS	34009864	34009954	0.96	-	0	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	exon	34009864	34009954	.	-	.	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
Ledus.S1	AUGUSTUS	start_codon	34009952	34009954	.	-	0	transcript_id "Ledus.S1G418500.t1"; gene_id "Ledus.S1G418500"
# This transcript jg10969.t2 is derived from g4587.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10970.t1 is derived from g4588.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	947201	949108	.	-	.	Ledus.S4G012600
Ledus.S4	AUGUSTUS	transcript	947201	949108	.	-	.	transcript_id "Ledus.S4G012600.t1"; gene_id "Ledus.S4G012600"
Ledus.S4	AUGUSTUS	stop_codon	947198	947200	.	-	0	transcript_id "Ledus.S4G012600.t1"; gene_id "Ledus.S4G012600"
Ledus.S4	AUGUSTUS	CDS	947201	949108	0.59	-	0	transcript_id "Ledus.S4G012600.t1"; gene_id "Ledus.S4G012600"
Ledus.S4	AUGUSTUS	exon	947201	949108	.	-	.	transcript_id "Ledus.S4G012600.t1"; gene_id "Ledus.S4G012600"
Ledus.S4	AUGUSTUS	start_codon	949106	949108	.	-	0	transcript_id "Ledus.S4G012600.t1"; gene_id "Ledus.S4G012600"
Ledus.S4	AUGUSTUS	transcript	947201	947518	.	-	.	transcript_id "Ledus.S4G012600.t2"; gene_id "Ledus.S4G012600"
Ledus.S4	AUGUSTUS	stop_codon	947198	947200	.	-	0	transcript_id "Ledus.S4G012600.t2"; gene_id "Ledus.S4G012600"
Ledus.S4	AUGUSTUS	CDS	947201	947518	0.54	-	0	transcript_id "Ledus.S4G012600.t2"; gene_id "Ledus.S4G012600"
Ledus.S4	AUGUSTUS	exon	947201	947518	.	-	.	transcript_id "Ledus.S4G012600.t2"; gene_id "Ledus.S4G012600"
Ledus.S4	AUGUSTUS	start_codon	947516	947518	.	-	0	transcript_id "Ledus.S4G012600.t2"; gene_id "Ledus.S4G012600"
# This transcript jg6734.t2 is derived from g4177.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6735.t1 is derived from g4178.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33626196	33627682	.	-	.	Ledus.S1G415600
Ledus.S1	AUGUSTUS	transcript	33627157	33627682	.	-	.	transcript_id "Ledus.S1G415600.t1"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	stop_codon	33627154	33627156	.	-	0	transcript_id "Ledus.S1G415600.t1"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	CDS	33627157	33627274	0.9	-	1	transcript_id "Ledus.S1G415600.t1"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	exon	33627157	33627274	.	-	.	transcript_id "Ledus.S1G415600.t1"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	intron	33627275	33627358	.	-	.	transcript_id "Ledus.S1G415600.t1"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	CDS	33627359	33627421	0.98	-	1	transcript_id "Ledus.S1G415600.t1"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	exon	33627359	33627421	.	-	.	transcript_id "Ledus.S1G415600.t1"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	intron	33627422	33627497	.	-	.	transcript_id "Ledus.S1G415600.t1"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	CDS	33627498	33627682	1	-	0	transcript_id "Ledus.S1G415600.t1"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	exon	33627498	33627682	.	-	.	transcript_id "Ledus.S1G415600.t1"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	start_codon	33627680	33627682	.	-	0	transcript_id "Ledus.S1G415600.t1"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	transcript	33626196	33627682	.	-	.	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	stop_codon	33626193	33626195	.	-	0	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	CDS	33626196	33626337	0.83	-	1	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	exon	33626196	33626337	.	-	.	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	intron	33626338	33626442	.	-	.	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	CDS	33626443	33626594	0.86	-	0	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	exon	33626443	33626594	.	-	.	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	intron	33626595	33626681	.	-	.	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	CDS	33626682	33627072	0.98	-	1	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	exon	33626682	33627072	.	-	.	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	intron	33627073	33627157	.	-	.	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	CDS	33627158	33627274	0.98	-	1	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	exon	33627158	33627274	.	-	.	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	intron	33627275	33627358	.	-	.	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	CDS	33627359	33627421	0.98	-	1	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	exon	33627359	33627421	.	-	.	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	intron	33627422	33627497	.	-	.	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	CDS	33627498	33627682	1	-	0	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	exon	33627498	33627682	.	-	.	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
Ledus.S1	AUGUSTUS	start_codon	33627680	33627682	.	-	0	transcript_id "Ledus.S1G415600.t2"; gene_id "Ledus.S1G415600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6808.t1 is derived from g4252.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34399313	34399924	.	+	.	Ledus.S1G422900
Ledus.S1	AUGUSTUS	transcript	34399313	34399924	.	+	.	transcript_id "Ledus.S1G422900.t1"; gene_id "Ledus.S1G422900"
Ledus.S1	AUGUSTUS	start_codon	34399313	34399315	.	+	0	transcript_id "Ledus.S1G422900.t1"; gene_id "Ledus.S1G422900"
Ledus.S1	AUGUSTUS	CDS	34399313	34399924	0.57	+	0	transcript_id "Ledus.S1G422900.t1"; gene_id "Ledus.S1G422900"
Ledus.S1	AUGUSTUS	exon	34399313	34399924	.	+	.	transcript_id "Ledus.S1G422900.t1"; gene_id "Ledus.S1G422900"
Ledus.S1	AUGUSTUS	stop_codon	34399925	34399927	.	+	0	transcript_id "Ledus.S1G422900.t1"; gene_id "Ledus.S1G422900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8974.t1 is derived from g10004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3639175	3640972	.	-	.	Ledus.S3G045100
Ledus.S3	AUGUSTUS	transcript	3639175	3640972	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	stop_codon	3639172	3639174	.	-	0	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	CDS	3639175	3639401	1	-	2	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	exon	3639175	3639401	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	intron	3639402	3639502	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	CDS	3639503	3639749	0.97	-	0	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	exon	3639503	3639749	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	intron	3639750	3639822	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	CDS	3639823	3640116	0.94	-	0	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	exon	3639823	3640116	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	intron	3640117	3640173	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	CDS	3640174	3640254	0.9	-	0	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	exon	3640174	3640254	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	intron	3640255	3640332	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	CDS	3640333	3640514	0.92	-	2	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	exon	3640333	3640514	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	intron	3640515	3640584	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	CDS	3640585	3640706	1	-	1	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	exon	3640585	3640706	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	intron	3640707	3640790	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	CDS	3640791	3640972	0.96	-	0	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	exon	3640791	3640972	.	-	.	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
Ledus.S3	AUGUSTUS	start_codon	3640970	3640972	.	-	0	transcript_id "Ledus.S3G045100.t1"; gene_id "Ledus.S3G045100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2174.t1 is derived from g9037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15729593	15730579	.	+	.	Ledus.S2G205600
Ledus.S2	AUGUSTUS	transcript	15729593	15730579	.	+	.	transcript_id "Ledus.S2G205600.t1"; gene_id "Ledus.S2G205600"
Ledus.S2	AUGUSTUS	start_codon	15729593	15729595	.	+	0	transcript_id "Ledus.S2G205600.t1"; gene_id "Ledus.S2G205600"
Ledus.S2	AUGUSTUS	CDS	15729593	15730579	0.99	+	0	transcript_id "Ledus.S2G205600.t1"; gene_id "Ledus.S2G205600"
Ledus.S2	AUGUSTUS	exon	15729593	15730579	.	+	.	transcript_id "Ledus.S2G205600.t1"; gene_id "Ledus.S2G205600"
Ledus.S2	AUGUSTUS	stop_codon	15730580	15730582	.	+	0	transcript_id "Ledus.S2G205600.t1"; gene_id "Ledus.S2G205600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3393.t1 is derived from g828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	8037346	8039543	.	+	.	Ledus.S1G081400
Ledus.S1	AUGUSTUS	transcript	8037346	8039543	.	+	.	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	start_codon	8037346	8037348	.	+	0	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	CDS	8037346	8037978	1	+	0	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	exon	8037346	8037978	.	+	.	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	intron	8037979	8038221	.	+	.	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	CDS	8038222	8038262	1	+	0	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	exon	8038222	8038262	.	+	.	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	intron	8038263	8038356	.	+	.	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	CDS	8038357	8038397	1	+	1	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	exon	8038357	8038397	.	+	.	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	intron	8038398	8038497	.	+	.	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	CDS	8038498	8039543	0.95	+	2	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	exon	8038498	8039543	.	+	.	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
Ledus.S1	AUGUSTUS	stop_codon	8039544	8039546	.	+	0	transcript_id "Ledus.S1G081400.t1"; gene_id "Ledus.S1G081400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3046.t1 is derived from g481.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5489043	5490158	.	+	.	Ledus.S1G046700
Ledus.S1	AUGUSTUS	transcript	5489043	5490158	.	+	.	transcript_id "Ledus.S1G046700.t1"; gene_id "Ledus.S1G046700"
Ledus.S1	AUGUSTUS	start_codon	5489043	5489045	.	+	0	transcript_id "Ledus.S1G046700.t1"; gene_id "Ledus.S1G046700"
Ledus.S1	AUGUSTUS	CDS	5489043	5489123	1	+	0	transcript_id "Ledus.S1G046700.t1"; gene_id "Ledus.S1G046700"
Ledus.S1	AUGUSTUS	exon	5489043	5489123	.	+	.	transcript_id "Ledus.S1G046700.t1"; gene_id "Ledus.S1G046700"
Ledus.S1	AUGUSTUS	intron	5489124	5489466	.	+	.	transcript_id "Ledus.S1G046700.t1"; gene_id "Ledus.S1G046700"
Ledus.S1	AUGUSTUS	CDS	5489467	5489511	1	+	0	transcript_id "Ledus.S1G046700.t1"; gene_id "Ledus.S1G046700"
Ledus.S1	AUGUSTUS	exon	5489467	5489511	.	+	.	transcript_id "Ledus.S1G046700.t1"; gene_id "Ledus.S1G046700"
Ledus.S1	AUGUSTUS	intron	5489512	5489603	.	+	.	transcript_id "Ledus.S1G046700.t1"; gene_id "Ledus.S1G046700"
Ledus.S1	AUGUSTUS	CDS	5489604	5490158	0.99	+	0	transcript_id "Ledus.S1G046700.t1"; gene_id "Ledus.S1G046700"
Ledus.S1	AUGUSTUS	exon	5489604	5490158	.	+	.	transcript_id "Ledus.S1G046700.t1"; gene_id "Ledus.S1G046700"
Ledus.S1	AUGUSTUS	stop_codon	5490159	5490161	.	+	0	transcript_id "Ledus.S1G046700.t1"; gene_id "Ledus.S1G046700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12981.t1 is derived from g6791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1525348	1525584	.	-	.	Ledus.S6G004300
Ledus.S6	AUGUSTUS	transcript	1525348	1525584	.	-	.	transcript_id "Ledus.S6G004300.t1"; gene_id "Ledus.S6G004300"
Ledus.S6	AUGUSTUS	stop_codon	1525345	1525347	.	-	0	transcript_id "Ledus.S6G004300.t1"; gene_id "Ledus.S6G004300"
Ledus.S6	AUGUSTUS	CDS	1525348	1525584	0.87	-	0	transcript_id "Ledus.S6G004300.t1"; gene_id "Ledus.S6G004300"
Ledus.S6	AUGUSTUS	exon	1525348	1525584	.	-	.	transcript_id "Ledus.S6G004300.t1"; gene_id "Ledus.S6G004300"
Ledus.S6	AUGUSTUS	start_codon	1525582	1525584	.	-	0	transcript_id "Ledus.S6G004300.t1"; gene_id "Ledus.S6G004300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2276.t1 is derived from g9139.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16888523	16889163	.	+	.	Ledus.S2G215800
Ledus.S2	AUGUSTUS	transcript	16888523	16889163	.	+	.	transcript_id "Ledus.S2G215800.t1"; gene_id "Ledus.S2G215800"
Ledus.S2	AUGUSTUS	start_codon	16888523	16888525	.	+	0	transcript_id "Ledus.S2G215800.t1"; gene_id "Ledus.S2G215800"
Ledus.S2	AUGUSTUS	CDS	16888523	16888618	0.48	+	0	transcript_id "Ledus.S2G215800.t1"; gene_id "Ledus.S2G215800"
Ledus.S2	AUGUSTUS	exon	16888523	16888618	.	+	.	transcript_id "Ledus.S2G215800.t1"; gene_id "Ledus.S2G215800"
Ledus.S2	AUGUSTUS	intron	16888619	16888715	.	+	.	transcript_id "Ledus.S2G215800.t1"; gene_id "Ledus.S2G215800"
Ledus.S2	AUGUSTUS	CDS	16888716	16888757	0.4	+	0	transcript_id "Ledus.S2G215800.t1"; gene_id "Ledus.S2G215800"
Ledus.S2	AUGUSTUS	exon	16888716	16888757	.	+	.	transcript_id "Ledus.S2G215800.t1"; gene_id "Ledus.S2G215800"
Ledus.S2	AUGUSTUS	intron	16888758	16889103	.	+	.	transcript_id "Ledus.S2G215800.t1"; gene_id "Ledus.S2G215800"
Ledus.S2	AUGUSTUS	CDS	16889104	16889163	0.39	+	0	transcript_id "Ledus.S2G215800.t1"; gene_id "Ledus.S2G215800"
Ledus.S2	AUGUSTUS	exon	16889104	16889163	.	+	.	transcript_id "Ledus.S2G215800.t1"; gene_id "Ledus.S2G215800"
Ledus.S2	AUGUSTUS	stop_codon	16889164	16889166	.	+	0	transcript_id "Ledus.S2G215800.t1"; gene_id "Ledus.S2G215800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5294.t1 is derived from g2733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22900096	22900356	.	-	.	Ledus.S1G271500
Ledus.S1	AUGUSTUS	transcript	22900096	22900356	.	-	.	transcript_id "Ledus.S1G271500.t1"; gene_id "Ledus.S1G271500"
Ledus.S1	AUGUSTUS	stop_codon	22900093	22900095	.	-	0	transcript_id "Ledus.S1G271500.t1"; gene_id "Ledus.S1G271500"
Ledus.S1	AUGUSTUS	CDS	22900096	22900356	0.99	-	0	transcript_id "Ledus.S1G271500.t1"; gene_id "Ledus.S1G271500"
Ledus.S1	AUGUSTUS	exon	22900096	22900356	.	-	.	transcript_id "Ledus.S1G271500.t1"; gene_id "Ledus.S1G271500"
Ledus.S1	AUGUSTUS	start_codon	22900354	22900356	.	-	0	transcript_id "Ledus.S1G271500.t1"; gene_id "Ledus.S1G271500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3796.t1 is derived from g1232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	12271125	12271888	.	+	.	Ledus.S1G121700
Ledus.S1	AUGUSTUS	transcript	12271125	12271888	.	+	.	transcript_id "Ledus.S1G121700.t1"; gene_id "Ledus.S1G121700"
Ledus.S1	AUGUSTUS	start_codon	12271125	12271127	.	+	0	transcript_id "Ledus.S1G121700.t1"; gene_id "Ledus.S1G121700"
Ledus.S1	AUGUSTUS	CDS	12271125	12271767	0.33	+	0	transcript_id "Ledus.S1G121700.t1"; gene_id "Ledus.S1G121700"
Ledus.S1	AUGUSTUS	exon	12271125	12271767	.	+	.	transcript_id "Ledus.S1G121700.t1"; gene_id "Ledus.S1G121700"
Ledus.S1	AUGUSTUS	intron	12271768	12271853	.	+	.	transcript_id "Ledus.S1G121700.t1"; gene_id "Ledus.S1G121700"
Ledus.S1	AUGUSTUS	CDS	12271854	12271888	0.65	+	2	transcript_id "Ledus.S1G121700.t1"; gene_id "Ledus.S1G121700"
Ledus.S1	AUGUSTUS	exon	12271854	12271888	.	+	.	transcript_id "Ledus.S1G121700.t1"; gene_id "Ledus.S1G121700"
Ledus.S1	AUGUSTUS	stop_codon	12271889	12271891	.	+	0	transcript_id "Ledus.S1G121700.t1"; gene_id "Ledus.S1G121700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11653.t1 is derived from g5272.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5741409	5743020	.	+	.	Ledus.S4G080900
Ledus.S4	AUGUSTUS	transcript	5741409	5743020	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	start_codon	5741409	5741411	.	+	0	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	CDS	5741409	5741603	0.98	+	0	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	exon	5741409	5741603	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	intron	5741604	5741680	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	CDS	5741681	5741740	1	+	0	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	exon	5741681	5741740	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	intron	5741741	5741903	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	CDS	5741904	5741946	0.95	+	0	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	exon	5741904	5741946	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	intron	5741947	5742063	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	CDS	5742064	5742118	0.99	+	2	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	exon	5742064	5742118	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	intron	5742119	5742207	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	CDS	5742208	5742256	1	+	1	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	exon	5742208	5742256	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	intron	5742257	5742479	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	CDS	5742480	5742547	1	+	0	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	exon	5742480	5742547	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	intron	5742548	5742655	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	CDS	5742656	5742764	1	+	1	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	exon	5742656	5742764	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	intron	5742765	5742840	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	CDS	5742841	5743020	0.98	+	0	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	exon	5742841	5743020	.	+	.	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
Ledus.S4	AUGUSTUS	stop_codon	5743021	5743023	.	+	0	transcript_id "Ledus.S4G080900.t1"; gene_id "Ledus.S4G080900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4535.t1 is derived from g1972.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17576697	17577965	.	+	.	Ledus.S1G195600
Ledus.S1	AUGUSTUS	transcript	17576697	17577965	.	+	.	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	start_codon	17576697	17576699	.	+	0	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	CDS	17576697	17576963	1	+	0	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	exon	17576697	17576963	.	+	.	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	intron	17576964	17577041	.	+	.	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	CDS	17577042	17577151	1	+	0	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	exon	17577042	17577151	.	+	.	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	intron	17577152	17577229	.	+	.	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	CDS	17577230	17577755	0.96	+	1	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	exon	17577230	17577755	.	+	.	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	intron	17577756	17577857	.	+	.	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	CDS	17577858	17577965	0.93	+	0	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	exon	17577858	17577965	.	+	.	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
Ledus.S1	AUGUSTUS	stop_codon	17577966	17577968	.	+	0	transcript_id "Ledus.S1G195600.t1"; gene_id "Ledus.S1G195600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8678.t1 is derived from g9708.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1327709	1328587	.	+	.	Ledus.S3G015500
Ledus.S3	AUGUSTUS	transcript	1327709	1328587	.	+	.	transcript_id "Ledus.S3G015500.t1"; gene_id "Ledus.S3G015500"
Ledus.S3	AUGUSTUS	start_codon	1327709	1327711	.	+	0	transcript_id "Ledus.S3G015500.t1"; gene_id "Ledus.S3G015500"
Ledus.S3	AUGUSTUS	CDS	1327709	1328587	0.98	+	0	transcript_id "Ledus.S3G015500.t1"; gene_id "Ledus.S3G015500"
Ledus.S3	AUGUSTUS	exon	1327709	1328587	.	+	.	transcript_id "Ledus.S3G015500.t1"; gene_id "Ledus.S3G015500"
Ledus.S3	AUGUSTUS	stop_codon	1328588	1328590	.	+	0	transcript_id "Ledus.S3G015500.t1"; gene_id "Ledus.S3G015500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6328.t1 is derived from g3771.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30507785	30512377	.	+	.	Ledus.S1G374900
Ledus.S1	AUGUSTUS	transcript	30507785	30512377	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	start_codon	30507785	30507787	.	+	0	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	CDS	30507785	30507935	0.99	+	0	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	exon	30507785	30507935	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	intron	30507936	30508759	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	CDS	30508760	30509493	1	+	2	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	exon	30508760	30509493	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	intron	30509494	30509651	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	CDS	30509652	30509959	0.97	+	0	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	exon	30509652	30509959	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	intron	30509960	30510048	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	CDS	30510049	30510196	1	+	1	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	exon	30510049	30510196	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	intron	30510197	30510274	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	CDS	30510275	30510331	1	+	0	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	exon	30510275	30510331	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	intron	30510332	30510452	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	CDS	30510453	30510560	1	+	0	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	exon	30510453	30510560	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	intron	30510561	30510660	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	CDS	30510661	30510759	0.99	+	0	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	exon	30510661	30510759	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	intron	30510760	30511038	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	CDS	30511039	30511146	1	+	0	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	exon	30511039	30511146	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	intron	30511147	30511227	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	CDS	30511228	30511314	1	+	0	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	exon	30511228	30511314	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	intron	30511315	30511682	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	CDS	30511683	30511868	1	+	0	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	exon	30511683	30511868	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	intron	30511869	30512067	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	CDS	30512068	30512160	1	+	0	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	exon	30512068	30512160	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	intron	30512161	30512260	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	CDS	30512261	30512377	0.39	+	0	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	exon	30512261	30512377	.	+	.	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
Ledus.S1	AUGUSTUS	stop_codon	30512378	30512380	.	+	0	transcript_id "Ledus.S1G374900.t1"; gene_id "Ledus.S1G374900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7624.t1 is derived from g12295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4422207	4423677	.	+	.	Ledus.S5G040200
Ledus.S5	AUGUSTUS	transcript	4422207	4423677	.	+	.	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	start_codon	4422207	4422209	.	+	0	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	CDS	4422207	4422483	0.55	+	0	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	exon	4422207	4422483	.	+	.	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	intron	4422484	4422847	.	+	.	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	CDS	4422848	4423197	0.73	+	2	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	exon	4422848	4423197	.	+	.	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	intron	4423198	4423284	.	+	.	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	CDS	4423285	4423371	1	+	0	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	exon	4423285	4423371	.	+	.	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	intron	4423372	4423455	.	+	.	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	CDS	4423456	4423677	1	+	0	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	exon	4423456	4423677	.	+	.	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
Ledus.S5	AUGUSTUS	stop_codon	4423678	4423680	.	+	0	transcript_id "Ledus.S5G040200.t1"; gene_id "Ledus.S5G040200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9430.t1 is derived from g10460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6699842	6703794	.	-	.	Ledus.S3G090700
Ledus.S3	AUGUSTUS	transcript	6699842	6703794	.	-	.	transcript_id "Ledus.S3G090700.t1"; gene_id "Ledus.S3G090700"
Ledus.S3	AUGUSTUS	stop_codon	6699839	6699841	.	-	0	transcript_id "Ledus.S3G090700.t1"; gene_id "Ledus.S3G090700"
Ledus.S3	AUGUSTUS	CDS	6699842	6699852	0.19	-	2	transcript_id "Ledus.S3G090700.t1"; gene_id "Ledus.S3G090700"
Ledus.S3	AUGUSTUS	exon	6699842	6699852	.	-	.	transcript_id "Ledus.S3G090700.t1"; gene_id "Ledus.S3G090700"
Ledus.S3	AUGUSTUS	intron	6699853	6701111	.	-	.	transcript_id "Ledus.S3G090700.t1"; gene_id "Ledus.S3G090700"
Ledus.S3	AUGUSTUS	CDS	6701112	6701244	0.04	-	0	transcript_id "Ledus.S3G090700.t1"; gene_id "Ledus.S3G090700"
Ledus.S3	AUGUSTUS	exon	6701112	6701244	.	-	.	transcript_id "Ledus.S3G090700.t1"; gene_id "Ledus.S3G090700"
Ledus.S3	AUGUSTUS	intron	6701245	6702783	.	-	.	transcript_id "Ledus.S3G090700.t1"; gene_id "Ledus.S3G090700"
Ledus.S3	AUGUSTUS	CDS	6702784	6703794	0.05	-	0	transcript_id "Ledus.S3G090700.t1"; gene_id "Ledus.S3G090700"
Ledus.S3	AUGUSTUS	exon	6702784	6703794	.	-	.	transcript_id "Ledus.S3G090700.t1"; gene_id "Ledus.S3G090700"
Ledus.S3	AUGUSTUS	start_codon	6703792	6703794	.	-	0	transcript_id "Ledus.S3G090700.t1"; gene_id "Ledus.S3G090700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7780.t1 is derived from g12451.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6505328	6507789	.	+	.	Ledus.S5G055800
Ledus.S5	AUGUSTUS	transcript	6505328	6507789	.	+	.	transcript_id "Ledus.S5G055800.t1"; gene_id "Ledus.S5G055800"
Ledus.S5	AUGUSTUS	start_codon	6505328	6505330	.	+	0	transcript_id "Ledus.S5G055800.t1"; gene_id "Ledus.S5G055800"
Ledus.S5	AUGUSTUS	CDS	6505328	6505357	0.76	+	0	transcript_id "Ledus.S5G055800.t1"; gene_id "Ledus.S5G055800"
Ledus.S5	AUGUSTUS	exon	6505328	6505357	.	+	.	transcript_id "Ledus.S5G055800.t1"; gene_id "Ledus.S5G055800"
Ledus.S5	AUGUSTUS	intron	6505358	6505507	.	+	.	transcript_id "Ledus.S5G055800.t1"; gene_id "Ledus.S5G055800"
Ledus.S5	AUGUSTUS	CDS	6505508	6505632	0.59	+	0	transcript_id "Ledus.S5G055800.t1"; gene_id "Ledus.S5G055800"
Ledus.S5	AUGUSTUS	exon	6505508	6505632	.	+	.	transcript_id "Ledus.S5G055800.t1"; gene_id "Ledus.S5G055800"
Ledus.S5	AUGUSTUS	intron	6505633	6507788	.	+	.	transcript_id "Ledus.S5G055800.t1"; gene_id "Ledus.S5G055800"
Ledus.S5	AUGUSTUS	CDS	6507789	6507789	0.01	+	1	transcript_id "Ledus.S5G055800.t1"; gene_id "Ledus.S5G055800"
Ledus.S5	AUGUSTUS	exon	6507789	6507789	.	+	.	transcript_id "Ledus.S5G055800.t1"; gene_id "Ledus.S5G055800"
Ledus.S5	AUGUSTUS	stop_codon	6507790	6507792	.	+	0	transcript_id "Ledus.S5G055800.t1"; gene_id "Ledus.S5G055800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2616.t1 is derived from g49.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	510390	510671	.	+	.	Ledus.S1G003700
Ledus.S1	AUGUSTUS	transcript	510390	510671	.	+	.	transcript_id "Ledus.S1G003700.t1"; gene_id "Ledus.S1G003700"
Ledus.S1	AUGUSTUS	start_codon	510390	510392	.	+	0	transcript_id "Ledus.S1G003700.t1"; gene_id "Ledus.S1G003700"
Ledus.S1	AUGUSTUS	CDS	510390	510671	0.66	+	0	transcript_id "Ledus.S1G003700.t1"; gene_id "Ledus.S1G003700"
Ledus.S1	AUGUSTUS	exon	510390	510671	.	+	.	transcript_id "Ledus.S1G003700.t1"; gene_id "Ledus.S1G003700"
Ledus.S1	AUGUSTUS	stop_codon	510672	510674	.	+	0	transcript_id "Ledus.S1G003700.t1"; gene_id "Ledus.S1G003700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7392.t1 is derived from g12063.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2049296	2051915	.	-	.	Ledus.S5G017000
Ledus.S5	AUGUSTUS	transcript	2049296	2051915	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	stop_codon	2049293	2049295	.	-	0	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	CDS	2049296	2049342	0.95	-	2	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	exon	2049296	2049342	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	intron	2049343	2049432	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	CDS	2049433	2049472	0.97	-	0	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	exon	2049433	2049472	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	intron	2049473	2049604	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	CDS	2049605	2049677	0.98	-	1	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	exon	2049605	2049677	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	intron	2049678	2049776	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	CDS	2049777	2049854	1	-	1	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	exon	2049777	2049854	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	intron	2049855	2049949	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	CDS	2049950	2049986	1	-	2	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	exon	2049950	2049986	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	intron	2049987	2050490	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	CDS	2050491	2050551	0.87	-	0	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	exon	2050491	2050551	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	intron	2050552	2050667	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	CDS	2050668	2050964	0.87	-	0	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	exon	2050668	2050964	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	intron	2050965	2051407	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	CDS	2051408	2051505	0.81	-	2	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	exon	2051408	2051505	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	intron	2051506	2051626	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	CDS	2051627	2051697	0.81	-	1	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	exon	2051627	2051697	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	intron	2051698	2051865	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	CDS	2051866	2051915	0.85	-	0	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	exon	2051866	2051915	.	-	.	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
Ledus.S5	AUGUSTUS	start_codon	2051913	2051915	.	-	0	transcript_id "Ledus.S5G017000.t1"; gene_id "Ledus.S5G017000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9864.t1 is derived from g10894.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10667777	10675095	.	-	.	Ledus.S3G134100
Ledus.S3	AUGUSTUS	transcript	10667777	10675095	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	stop_codon	10667774	10667776	.	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10667777	10668215	0.47	-	1	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10667777	10668215	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10668216	10668339	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10668340	10668417	1	-	1	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10668340	10668417	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10668418	10668661	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10668662	10668756	1	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10668662	10668756	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10668757	10668905	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10668906	10669035	1	-	1	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10668906	10669035	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10669036	10669161	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10669162	10669217	1	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10669162	10669217	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10669218	10669352	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10669353	10669517	1	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10669353	10669517	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10669518	10669651	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10669652	10669732	1	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10669652	10669732	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10669733	10669902	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10669903	10670061	1	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10669903	10670061	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10670062	10670239	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10670240	10670377	1	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10670240	10670377	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10670378	10670455	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10670456	10670524	1	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10670456	10670524	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10670525	10670690	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10670691	10670761	1	-	2	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10670691	10670761	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10670762	10670851	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10670852	10670975	1	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10670852	10670975	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10670976	10671109	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10671110	10671245	0.99	-	1	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10671110	10671245	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10671246	10671397	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10671398	10671549	0.95	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10671398	10671549	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10671550	10671708	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10671709	10671829	1	-	1	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10671709	10671829	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10671830	10671912	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10671913	10672040	1	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10671913	10672040	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10672041	10672158	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10672159	10672245	0.98	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10672159	10672245	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10672246	10672406	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10672407	10672538	1	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10672407	10672538	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10672539	10672638	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10672639	10673041	1	-	1	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10672639	10673041	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10673042	10673299	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10673300	10673430	1	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10673300	10673430	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10673431	10673597	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10673598	10673789	0.99	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10673598	10673789	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10673790	10673921	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10673922	10674422	1	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10673922	10674422	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10674423	10674528	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10674529	10674586	1	-	1	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10674529	10674586	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10674587	10674739	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10674740	10674950	0.87	-	2	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10674740	10674950	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	intron	10674951	10675031	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	CDS	10675032	10675095	0.55	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	exon	10675032	10675095	.	-	.	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
Ledus.S3	AUGUSTUS	start_codon	10675093	10675095	.	-	0	transcript_id "Ledus.S3G134100.t1"; gene_id "Ledus.S3G134100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10608.t1 is derived from g11638.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16435860	16436135	.	-	.	Ledus.S3G208500
Ledus.S3	AUGUSTUS	transcript	16435860	16436135	.	-	.	transcript_id "Ledus.S3G208500.t1"; gene_id "Ledus.S3G208500"
Ledus.S3	AUGUSTUS	stop_codon	16435857	16435859	.	-	0	transcript_id "Ledus.S3G208500.t1"; gene_id "Ledus.S3G208500"
Ledus.S3	AUGUSTUS	CDS	16435860	16436135	0.91	-	0	transcript_id "Ledus.S3G208500.t1"; gene_id "Ledus.S3G208500"
Ledus.S3	AUGUSTUS	exon	16435860	16436135	.	-	.	transcript_id "Ledus.S3G208500.t1"; gene_id "Ledus.S3G208500"
Ledus.S3	AUGUSTUS	start_codon	16436133	16436135	.	-	0	transcript_id "Ledus.S3G208500.t1"; gene_id "Ledus.S3G208500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3214.t1 is derived from g649.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6945449	6948382	.	+	.	Ledus.S1G063500
Ledus.S1	AUGUSTUS	transcript	6945449	6948382	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	start_codon	6945449	6945451	.	+	0	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	CDS	6945449	6946184	0.73	+	0	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	exon	6945449	6946184	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	intron	6946185	6946328	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	CDS	6946329	6946400	0.6	+	2	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	exon	6946329	6946400	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	intron	6946401	6946840	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	CDS	6946841	6947182	0.79	+	2	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	exon	6946841	6947182	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	intron	6947183	6947326	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	CDS	6947327	6947463	1	+	2	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	exon	6947327	6947463	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	intron	6947464	6947666	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	CDS	6947667	6947796	0.7	+	0	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	exon	6947667	6947796	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	intron	6947797	6947915	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	CDS	6947916	6947973	0.92	+	2	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	exon	6947916	6947973	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	intron	6947974	6948077	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	CDS	6948078	6948139	1	+	1	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	exon	6948078	6948139	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	intron	6948140	6948329	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	CDS	6948330	6948382	1	+	2	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	exon	6948330	6948382	.	+	.	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
Ledus.S1	AUGUSTUS	stop_codon	6948383	6948385	.	+	0	transcript_id "Ledus.S1G063500.t1"; gene_id "Ledus.S1G063500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8985.t1 is derived from g10015.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3679486	3684579	.	-	.	Ledus.S3G046200
Ledus.S3	AUGUSTUS	transcript	3679486	3684579	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	stop_codon	3679483	3679485	.	-	0	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	CDS	3679486	3680792	0.98	-	2	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	exon	3679486	3680792	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	intron	3680793	3680932	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	CDS	3680933	3681141	1	-	1	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	exon	3680933	3681141	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	intron	3681142	3681399	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	CDS	3681400	3681821	1	-	0	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	exon	3681400	3681821	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	intron	3681822	3681913	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	CDS	3681914	3682663	1	-	0	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	exon	3681914	3682663	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	intron	3682664	3682826	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	CDS	3682827	3682907	1	-	0	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	exon	3682827	3682907	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	intron	3682908	3683010	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	CDS	3683011	3683277	0.83	-	0	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	exon	3683011	3683277	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	intron	3683278	3683391	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	CDS	3683392	3683644	0.99	-	1	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	exon	3683392	3683644	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	intron	3683645	3683779	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	CDS	3683780	3683868	1	-	0	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	exon	3683780	3683868	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	intron	3683869	3683959	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	CDS	3683960	3684015	1	-	2	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	exon	3683960	3684015	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	intron	3684016	3684143	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	CDS	3684144	3684579	1	-	0	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	exon	3684144	3684579	.	-	.	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
Ledus.S3	AUGUSTUS	start_codon	3684577	3684579	.	-	0	transcript_id "Ledus.S3G046200.t1"; gene_id "Ledus.S3G046200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4114.t1 is derived from g1550.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14770062	14773091	.	+	.	Ledus.S1G153500
Ledus.S1	AUGUSTUS	transcript	14770062	14773091	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	start_codon	14770062	14770064	.	+	0	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14770062	14770169	1	+	0	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14770062	14770169	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14770170	14770297	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14770298	14770385	1	+	0	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14770298	14770385	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14770386	14770460	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14770461	14770581	1	+	2	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14770461	14770581	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14770582	14770677	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14770678	14770751	1	+	1	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14770678	14770751	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14770752	14770834	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14770835	14770911	1	+	2	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14770835	14770911	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14770912	14771024	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14771025	14771061	1	+	0	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14771025	14771061	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14771062	14771186	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14771187	14771272	1	+	2	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14771187	14771272	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14771273	14771399	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14771400	14771459	1	+	0	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14771400	14771459	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14771460	14771656	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14771657	14771805	1	+	0	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14771657	14771805	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14771806	14771966	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14771967	14772093	1	+	1	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14771967	14772093	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14772094	14772167	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14772168	14772323	1	+	0	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14772168	14772323	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14772324	14772411	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14772412	14772522	1	+	0	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14772412	14772522	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14772523	14772608	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14772609	14772719	1	+	0	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14772609	14772719	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14772720	14772784	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14772785	14772883	1	+	0	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14772785	14772883	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	intron	14772884	14772968	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	CDS	14772969	14773091	0.83	+	0	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	exon	14772969	14773091	.	+	.	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
Ledus.S1	AUGUSTUS	stop_codon	14773092	14773094	.	+	0	transcript_id "Ledus.S1G153500.t1"; gene_id "Ledus.S1G153500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9324.t1 is derived from g10354.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6102573	6104931	.	+	.	Ledus.S3G080100
Ledus.S3	AUGUSTUS	transcript	6102573	6104931	.	+	.	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	start_codon	6102573	6102575	.	+	0	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	CDS	6102573	6102611	0.86	+	0	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	exon	6102573	6102611	.	+	.	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	intron	6102612	6104373	.	+	.	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	CDS	6104374	6104457	1	+	0	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	exon	6104374	6104457	.	+	.	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	intron	6104458	6104599	.	+	.	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	CDS	6104600	6104725	1	+	0	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	exon	6104600	6104725	.	+	.	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	intron	6104726	6104883	.	+	.	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	CDS	6104884	6104931	0.91	+	0	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	exon	6104884	6104931	.	+	.	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
Ledus.S3	AUGUSTUS	stop_codon	6104932	6104934	.	+	0	transcript_id "Ledus.S3G080100.t1"; gene_id "Ledus.S3G080100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2241.t1 is derived from g9104.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	16329622	16329932	.	-	.	Ledus.S2G212300
Ledus.S2	AUGUSTUS	transcript	16329622	16329932	.	-	.	transcript_id "Ledus.S2G212300.t1"; gene_id "Ledus.S2G212300"
Ledus.S2	AUGUSTUS	stop_codon	16329619	16329621	.	-	0	transcript_id "Ledus.S2G212300.t1"; gene_id "Ledus.S2G212300"
Ledus.S2	AUGUSTUS	CDS	16329622	16329652	0.62	-	1	transcript_id "Ledus.S2G212300.t1"; gene_id "Ledus.S2G212300"
Ledus.S2	AUGUSTUS	exon	16329622	16329652	.	-	.	transcript_id "Ledus.S2G212300.t1"; gene_id "Ledus.S2G212300"
Ledus.S2	AUGUSTUS	intron	16329653	16329756	.	-	.	transcript_id "Ledus.S2G212300.t1"; gene_id "Ledus.S2G212300"
Ledus.S2	AUGUSTUS	CDS	16329757	16329932	0.55	-	0	transcript_id "Ledus.S2G212300.t1"; gene_id "Ledus.S2G212300"
Ledus.S2	AUGUSTUS	exon	16329757	16329932	.	-	.	transcript_id "Ledus.S2G212300.t1"; gene_id "Ledus.S2G212300"
Ledus.S2	AUGUSTUS	start_codon	16329930	16329932	.	-	0	transcript_id "Ledus.S2G212300.t1"; gene_id "Ledus.S2G212300"
# This transcript jg9543.t2 is derived from g10573.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9544.t1 is derived from g10574.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7669196	7673706	.	+	.	Ledus.S3G102100
Ledus.S3	AUGUSTUS	transcript	7669261	7673706	.	+	.	transcript_id "Ledus.S3G102100.t1"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	start_codon	7669261	7669263	.	+	0	transcript_id "Ledus.S3G102100.t1"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	CDS	7669261	7669315	1	+	0	transcript_id "Ledus.S3G102100.t1"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	exon	7669261	7669315	.	+	.	transcript_id "Ledus.S3G102100.t1"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	intron	7669316	7669414	.	+	.	transcript_id "Ledus.S3G102100.t1"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	CDS	7669415	7673706	0.97	+	2	transcript_id "Ledus.S3G102100.t1"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	exon	7669415	7673706	.	+	.	transcript_id "Ledus.S3G102100.t1"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	stop_codon	7673707	7673709	.	+	0	transcript_id "Ledus.S3G102100.t1"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	transcript	7669196	7673706	.	+	.	transcript_id "Ledus.S3G102100.t2"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	start_codon	7669196	7669198	.	+	0	transcript_id "Ledus.S3G102100.t2"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	CDS	7669196	7669319	0.92	+	0	transcript_id "Ledus.S3G102100.t2"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	exon	7669196	7669319	.	+	.	transcript_id "Ledus.S3G102100.t2"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	intron	7669320	7669414	.	+	.	transcript_id "Ledus.S3G102100.t2"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	CDS	7669415	7673706	1	+	2	transcript_id "Ledus.S3G102100.t2"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	exon	7669415	7673706	.	+	.	transcript_id "Ledus.S3G102100.t2"; gene_id "Ledus.S3G102100"
Ledus.S3	AUGUSTUS	stop_codon	7673707	7673709	.	+	0	transcript_id "Ledus.S3G102100.t2"; gene_id "Ledus.S3G102100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg147.t1 is derived from g7008.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	274704	276866	.	+	.	Ledus.S2G002900
Ledus.S2	AUGUSTUS	transcript	274704	276866	.	+	.	transcript_id "Ledus.S2G002900.t1"; gene_id "Ledus.S2G002900"
Ledus.S2	AUGUSTUS	start_codon	274704	274706	.	+	0	transcript_id "Ledus.S2G002900.t1"; gene_id "Ledus.S2G002900"
Ledus.S2	AUGUSTUS	CDS	274704	276028	0.96	+	0	transcript_id "Ledus.S2G002900.t1"; gene_id "Ledus.S2G002900"
Ledus.S2	AUGUSTUS	exon	274704	276028	.	+	.	transcript_id "Ledus.S2G002900.t1"; gene_id "Ledus.S2G002900"
Ledus.S2	AUGUSTUS	intron	276029	276121	.	+	.	transcript_id "Ledus.S2G002900.t1"; gene_id "Ledus.S2G002900"
Ledus.S2	AUGUSTUS	CDS	276122	276354	0.96	+	1	transcript_id "Ledus.S2G002900.t1"; gene_id "Ledus.S2G002900"
Ledus.S2	AUGUSTUS	exon	276122	276354	.	+	.	transcript_id "Ledus.S2G002900.t1"; gene_id "Ledus.S2G002900"
Ledus.S2	AUGUSTUS	intron	276355	276441	.	+	.	transcript_id "Ledus.S2G002900.t1"; gene_id "Ledus.S2G002900"
Ledus.S2	AUGUSTUS	CDS	276442	276866	1	+	2	transcript_id "Ledus.S2G002900.t1"; gene_id "Ledus.S2G002900"
Ledus.S2	AUGUSTUS	exon	276442	276866	.	+	.	transcript_id "Ledus.S2G002900.t1"; gene_id "Ledus.S2G002900"
Ledus.S2	AUGUSTUS	stop_codon	276867	276869	.	+	0	transcript_id "Ledus.S2G002900.t1"; gene_id "Ledus.S2G002900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1172.t1 is derived from g8033.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8139929	8144270	.	-	.	Ledus.S2G105400
Ledus.S2	AUGUSTUS	transcript	8139929	8144270	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	stop_codon	8139926	8139928	.	-	0	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8139929	8140654	0.99	-	0	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8139929	8140654	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8140655	8140786	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8140787	8141184	0.99	-	2	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8140787	8141184	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8141185	8141367	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8141368	8141425	1	-	0	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8141368	8141425	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8141426	8141613	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8141614	8141780	0.76	-	2	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8141614	8141780	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8141781	8141905	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8141906	8142043	0.89	-	2	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8141906	8142043	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8142044	8142124	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8142125	8142179	1	-	0	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8142125	8142179	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8142180	8142287	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8142288	8142352	1	-	2	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8142288	8142352	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8142353	8142443	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8142444	8142547	1	-	1	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8142444	8142547	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8142548	8142752	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8142753	8142817	0.85	-	0	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8142753	8142817	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8142818	8142977	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8142978	8143076	1	-	0	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8142978	8143076	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8143077	8143223	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8143224	8143332	1	-	1	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8143224	8143332	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8143333	8143461	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8143462	8143518	1	-	1	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8143462	8143518	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8143519	8143626	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8143627	8143715	0.91	-	0	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8143627	8143715	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8143716	8143825	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8143826	8143934	0.82	-	1	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8143826	8143934	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8143935	8144030	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8144031	8144130	1	-	2	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8144031	8144130	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	intron	8144131	8144209	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	CDS	8144210	8144270	1	-	0	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	exon	8144210	8144270	.	-	.	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
Ledus.S2	AUGUSTUS	start_codon	8144268	8144270	.	-	0	transcript_id "Ledus.S2G105400.t1"; gene_id "Ledus.S2G105400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9377.t1 is derived from g10407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6438928	6443525	.	-	.	Ledus.S3G085400
Ledus.S3	AUGUSTUS	transcript	6438928	6443525	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	stop_codon	6438925	6438927	.	-	0	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	CDS	6438928	6438947	0.26	-	2	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	exon	6438928	6438947	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	intron	6438948	6439143	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	CDS	6439144	6439209	0.51	-	2	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	exon	6439144	6439209	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	intron	6439210	6439293	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	CDS	6439294	6439409	1	-	1	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	exon	6439294	6439409	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	intron	6439410	6439564	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	CDS	6439565	6439936	0.82	-	1	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	exon	6439565	6439936	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	intron	6439937	6440025	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	CDS	6440026	6440160	0.86	-	1	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	exon	6440026	6440160	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	intron	6440161	6440282	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	CDS	6440283	6440474	0.96	-	1	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	exon	6440283	6440474	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	intron	6440475	6440578	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	CDS	6440579	6440652	0.97	-	0	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	exon	6440579	6440652	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	intron	6440653	6440796	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	CDS	6440797	6442827	0.28	-	0	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	exon	6440797	6442827	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	intron	6442828	6442991	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	CDS	6442992	6443111	0.95	-	0	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	exon	6442992	6443111	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	intron	6443112	6443208	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	CDS	6443209	6443361	0.67	-	0	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	exon	6443209	6443361	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	intron	6443362	6443435	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	CDS	6443436	6443525	0.43	-	0	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	exon	6443436	6443525	.	-	.	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
Ledus.S3	AUGUSTUS	start_codon	6443523	6443525	.	-	0	transcript_id "Ledus.S3G085400.t1"; gene_id "Ledus.S3G085400"
# This transcript jg9623.t2 is derived from g10653.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9624.t1 is derived from g10654.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8450464	8451633	.	+	.	Ledus.S3G110100
Ledus.S3	AUGUSTUS	transcript	8450464	8451633	.	+	.	transcript_id "Ledus.S3G110100.t1"; gene_id "Ledus.S3G110100"
Ledus.S3	AUGUSTUS	start_codon	8450464	8450466	.	+	0	transcript_id "Ledus.S3G110100.t1"; gene_id "Ledus.S3G110100"
Ledus.S3	AUGUSTUS	CDS	8450464	8451633	1	+	0	transcript_id "Ledus.S3G110100.t1"; gene_id "Ledus.S3G110100"
Ledus.S3	AUGUSTUS	exon	8450464	8451633	.	+	.	transcript_id "Ledus.S3G110100.t1"; gene_id "Ledus.S3G110100"
Ledus.S3	AUGUSTUS	stop_codon	8451634	8451636	.	+	0	transcript_id "Ledus.S3G110100.t1"; gene_id "Ledus.S3G110100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg5510.t1 is derived from g2949.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24709189	24713932	.	-	.	Ledus.S1G293100
Ledus.S1	AUGUSTUS	transcript	24709189	24713932	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	stop_codon	24709186	24709188	.	-	0	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709189	24709305	0.98	-	0	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709189	24709305	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24709306	24709379	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709380	24709583	0.99	-	0	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709380	24709583	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24709584	24709709	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709710	24709802	1	-	0	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709710	24709802	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24709803	24709976	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709977	24710109	1	-	1	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709977	24710109	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710110	24710218	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710219	24710302	0.92	-	1	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710219	24710302	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710303	24710466	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710467	24710566	0.98	-	2	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710467	24710566	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710567	24710679	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710680	24710743	0.99	-	0	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710680	24710743	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710744	24710989	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710990	24711070	1	-	0	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710990	24711070	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24711071	24711203	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24711204	24711260	1	-	0	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24711204	24711260	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24711261	24711428	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24711429	24711619	1	-	2	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24711429	24711619	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24711620	24711803	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24711804	24712053	0.88	-	0	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24711804	24712053	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712054	24712157	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24712158	24712347	0.84	-	1	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24712158	24712347	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712348	24712456	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24712457	24712567	0.99	-	1	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24712457	24712567	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712568	24712717	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24712718	24712937	0.92	-	2	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24712718	24712937	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712938	24713075	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24713076	24713263	1	-	1	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24713076	24713263	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24713264	24713852	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24713853	24713932	1	-	0	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24713853	24713932	.	-	.	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	start_codon	24713930	24713932	.	-	0	transcript_id "Ledus.S1G293100.t1"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	transcript	24709189	24713932	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	stop_codon	24709186	24709188	.	-	0	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709189	24709305	0.97	-	0	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709189	24709305	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24709306	24709379	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709380	24709583	1	-	0	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709380	24709583	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24709584	24709709	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709710	24709802	1	-	0	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709710	24709802	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24709803	24709976	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709977	24710109	1	-	1	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709977	24710109	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710110	24710218	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710219	24710302	0.99	-	1	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710219	24710302	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710303	24710466	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710467	24710566	1	-	2	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710467	24710566	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710567	24710679	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710680	24710743	1	-	0	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710680	24710743	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710744	24710989	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710990	24711070	1	-	0	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710990	24711070	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24711071	24711203	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24711204	24711260	1	-	0	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24711204	24711260	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24711261	24711428	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24711429	24711619	1	-	2	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24711429	24711619	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24711620	24711803	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24711804	24712053	0.89	-	0	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24711804	24712053	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712054	24712157	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24712158	24712347	0.84	-	1	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24712158	24712347	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712348	24712456	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24712457	24712567	0.99	-	1	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24712457	24712567	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712568	24712717	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24712718	24712839	1	-	0	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24712718	24712839	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712840	24713075	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24713076	24713087	0.99	-	0	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24713076	24713087	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24713088	24713199	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24713200	24713263	0.79	-	1	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24713200	24713263	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24713264	24713852	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24713853	24713932	1	-	0	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24713853	24713932	.	-	.	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	start_codon	24713930	24713932	.	-	0	transcript_id "Ledus.S1G293100.t2"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	transcript	24709189	24713932	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	stop_codon	24709186	24709188	.	-	0	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709189	24709305	1	-	0	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709189	24709305	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24709306	24709379	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709380	24709583	1	-	0	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709380	24709583	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24709584	24709709	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709710	24709802	1	-	0	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709710	24709802	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24709803	24709988	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709989	24710109	0.99	-	1	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709989	24710109	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710110	24710218	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710219	24710302	0.92	-	1	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710219	24710302	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710303	24710466	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710467	24710566	0.99	-	2	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710467	24710566	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710567	24710679	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710680	24710743	0.98	-	0	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710680	24710743	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710744	24710989	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710990	24711070	1	-	0	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710990	24711070	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24711071	24711203	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24711204	24711260	1	-	0	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24711204	24711260	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24711261	24711428	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24711429	24711619	1	-	2	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24711429	24711619	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24711620	24711803	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24711804	24712053	0.83	-	0	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24711804	24712053	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712054	24712157	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24712158	24712347	0.91	-	1	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24712158	24712347	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712348	24712456	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24712457	24712567	0.99	-	1	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24712457	24712567	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712568	24712717	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24712718	24712839	0.99	-	0	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24712718	24712839	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712840	24713075	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24713076	24713087	0.98	-	0	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24713076	24713087	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24713088	24713199	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24713200	24713263	0.63	-	1	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24713200	24713263	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24713264	24713852	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24713853	24713932	1	-	0	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24713853	24713932	.	-	.	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	start_codon	24713930	24713932	.	-	0	transcript_id "Ledus.S1G293100.t3"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	transcript	24709189	24713932	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	stop_codon	24709186	24709188	.	-	0	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709189	24709305	0.99	-	0	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709189	24709305	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24709306	24709379	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709380	24709583	1	-	0	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709380	24709583	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24709584	24709709	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709710	24709802	1	-	0	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709710	24709802	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24709803	24709976	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24709977	24710109	1	-	1	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24709977	24710109	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710110	24710218	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710219	24710302	0.95	-	1	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710219	24710302	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710303	24710466	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710467	24710566	0.98	-	2	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710467	24710566	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710567	24710679	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710680	24710743	0.99	-	0	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710680	24710743	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24710744	24710989	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24710990	24711070	1	-	0	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24710990	24711070	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24711071	24711203	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24711204	24711260	1	-	0	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24711204	24711260	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24711261	24711428	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24711429	24711619	1	-	2	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24711429	24711619	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24711620	24711803	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24711804	24712053	0.82	-	0	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24711804	24712053	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712054	24712157	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24712158	24712347	0.88	-	1	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24712158	24712347	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712348	24712456	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24712457	24712567	0.98	-	1	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24712457	24712567	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712568	24712717	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24712718	24712937	0.88	-	2	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24712718	24712937	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24712938	24713080	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24713081	24713087	0.84	-	0	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24713081	24713087	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24713088	24713199	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24713200	24713263	0.6	-	1	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24713200	24713263	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	intron	24713264	24713852	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	CDS	24713853	24713932	1	-	0	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	exon	24713853	24713932	.	-	.	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
Ledus.S1	AUGUSTUS	start_codon	24713930	24713932	.	-	0	transcript_id "Ledus.S1G293100.t4"; gene_id "Ledus.S1G293100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4545.t1 is derived from g1982.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17610656	17613076	.	+	.	Ledus.S1G196600
Ledus.S1	AUGUSTUS	transcript	17610656	17613076	.	+	.	transcript_id "Ledus.S1G196600.t1"; gene_id "Ledus.S1G196600"
Ledus.S1	AUGUSTUS	start_codon	17610656	17610658	.	+	0	transcript_id "Ledus.S1G196600.t1"; gene_id "Ledus.S1G196600"
Ledus.S1	AUGUSTUS	CDS	17610656	17611559	0.44	+	0	transcript_id "Ledus.S1G196600.t1"; gene_id "Ledus.S1G196600"
Ledus.S1	AUGUSTUS	exon	17610656	17611559	.	+	.	transcript_id "Ledus.S1G196600.t1"; gene_id "Ledus.S1G196600"
Ledus.S1	AUGUSTUS	intron	17611560	17611633	.	+	.	transcript_id "Ledus.S1G196600.t1"; gene_id "Ledus.S1G196600"
Ledus.S1	AUGUSTUS	CDS	17611634	17611813	1	+	2	transcript_id "Ledus.S1G196600.t1"; gene_id "Ledus.S1G196600"
Ledus.S1	AUGUSTUS	exon	17611634	17611813	.	+	.	transcript_id "Ledus.S1G196600.t1"; gene_id "Ledus.S1G196600"
Ledus.S1	AUGUSTUS	intron	17611814	17611910	.	+	.	transcript_id "Ledus.S1G196600.t1"; gene_id "Ledus.S1G196600"
Ledus.S1	AUGUSTUS	CDS	17611911	17613076	0.71	+	2	transcript_id "Ledus.S1G196600.t1"; gene_id "Ledus.S1G196600"
Ledus.S1	AUGUSTUS	exon	17611911	17613076	.	+	.	transcript_id "Ledus.S1G196600.t1"; gene_id "Ledus.S1G196600"
Ledus.S1	AUGUSTUS	stop_codon	17613077	17613079	.	+	0	transcript_id "Ledus.S1G196600.t1"; gene_id "Ledus.S1G196600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8504.t1 is derived from g13176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12324660	12325082	.	+	.	Ledus.S5G128200
Ledus.S5	AUGUSTUS	transcript	12324660	12325082	.	+	.	transcript_id "Ledus.S5G128200.t1"; gene_id "Ledus.S5G128200"
Ledus.S5	AUGUSTUS	start_codon	12324660	12324662	.	+	0	transcript_id "Ledus.S5G128200.t1"; gene_id "Ledus.S5G128200"
Ledus.S5	AUGUSTUS	CDS	12324660	12325082	0.85	+	0	transcript_id "Ledus.S5G128200.t1"; gene_id "Ledus.S5G128200"
Ledus.S5	AUGUSTUS	exon	12324660	12325082	.	+	.	transcript_id "Ledus.S5G128200.t1"; gene_id "Ledus.S5G128200"
Ledus.S5	AUGUSTUS	stop_codon	12325083	12325085	.	+	0	transcript_id "Ledus.S5G128200.t1"; gene_id "Ledus.S5G128200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5237.t1 is derived from g2676.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22627469	22628940	.	+	.	Ledus.S1G265800
Ledus.S1	AUGUSTUS	transcript	22627469	22628940	.	+	.	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	start_codon	22627469	22627471	.	+	0	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	CDS	22627469	22627714	0.65	+	0	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	exon	22627469	22627714	.	+	.	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	intron	22627715	22627799	.	+	.	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	CDS	22627800	22627959	1	+	0	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	exon	22627800	22627959	.	+	.	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	intron	22627960	22628169	.	+	.	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	CDS	22628170	22628381	1	+	2	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	exon	22628170	22628381	.	+	.	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	intron	22628382	22628588	.	+	.	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	CDS	22628589	22628762	1	+	0	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	exon	22628589	22628762	.	+	.	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	intron	22628763	22628856	.	+	.	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	CDS	22628857	22628940	0.99	+	0	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	exon	22628857	22628940	.	+	.	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
Ledus.S1	AUGUSTUS	stop_codon	22628941	22628943	.	+	0	transcript_id "Ledus.S1G265800.t1"; gene_id "Ledus.S1G265800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4232.t1 is derived from g1668.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15675621	15677105	.	-	.	Ledus.S1G165300
Ledus.S1	AUGUSTUS	transcript	15675621	15677105	.	-	.	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	stop_codon	15675618	15675620	.	-	0	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	CDS	15675621	15675627	0.98	-	1	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	exon	15675621	15675627	.	-	.	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	intron	15675628	15675722	.	-	.	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	CDS	15675723	15675893	0.98	-	1	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	exon	15675723	15675893	.	-	.	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	intron	15675894	15676121	.	-	.	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	CDS	15676122	15676205	0.55	-	1	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	exon	15676122	15676205	.	-	.	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	intron	15676206	15676293	.	-	.	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	CDS	15676294	15676540	0.88	-	2	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	exon	15676294	15676540	.	-	.	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	intron	15676541	15676862	.	-	.	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	CDS	15676863	15676963	0.68	-	1	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	exon	15676863	15676963	.	-	.	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	intron	15676964	15677088	.	-	.	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	CDS	15677089	15677105	0.74	-	0	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	exon	15677089	15677105	.	-	.	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
Ledus.S1	AUGUSTUS	start_codon	15677103	15677105	.	-	0	transcript_id "Ledus.S1G165300.t1"; gene_id "Ledus.S1G165300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5671.t1 is derived from g3110.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25731951	25732718	.	-	.	Ledus.S1G309200
Ledus.S1	AUGUSTUS	transcript	25731951	25732718	.	-	.	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	stop_codon	25731948	25731950	.	-	0	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	CDS	25731951	25731987	0.53	-	1	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	exon	25731951	25731987	.	-	.	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	intron	25731988	25732076	.	-	.	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	CDS	25732077	25732248	0.51	-	2	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	exon	25732077	25732248	.	-	.	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	intron	25732249	25732346	.	-	.	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	CDS	25732347	25732446	0.31	-	0	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	exon	25732347	25732446	.	-	.	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	intron	25732447	25732523	.	-	.	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	CDS	25732524	25732718	0.12	-	0	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	exon	25732524	25732718	.	-	.	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
Ledus.S1	AUGUSTUS	start_codon	25732716	25732718	.	-	0	transcript_id "Ledus.S1G309200.t1"; gene_id "Ledus.S1G309200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12135.t1 is derived from g5754.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9764811	9765548	.	+	.	Ledus.S4G129100
Ledus.S4	AUGUSTUS	transcript	9764811	9765548	.	+	.	transcript_id "Ledus.S4G129100.t1"; gene_id "Ledus.S4G129100"
Ledus.S4	AUGUSTUS	start_codon	9764811	9764813	.	+	0	transcript_id "Ledus.S4G129100.t1"; gene_id "Ledus.S4G129100"
Ledus.S4	AUGUSTUS	CDS	9764811	9765548	0.46	+	0	transcript_id "Ledus.S4G129100.t1"; gene_id "Ledus.S4G129100"
Ledus.S4	AUGUSTUS	exon	9764811	9765548	.	+	.	transcript_id "Ledus.S4G129100.t1"; gene_id "Ledus.S4G129100"
Ledus.S4	AUGUSTUS	stop_codon	9765549	9765551	.	+	0	transcript_id "Ledus.S4G129100.t1"; gene_id "Ledus.S4G129100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5599.t1 is derived from g3038.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25320162	25321310	.	+	.	Ledus.S1G302000
Ledus.S1	AUGUSTUS	transcript	25320162	25321310	.	+	.	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	start_codon	25320162	25320164	.	+	0	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	CDS	25320162	25320659	0.58	+	0	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	exon	25320162	25320659	.	+	.	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	intron	25320660	25320762	.	+	.	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	CDS	25320763	25320925	1	+	0	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	exon	25320763	25320925	.	+	.	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	intron	25320926	25321002	.	+	.	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	CDS	25321003	25321091	1	+	2	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	exon	25321003	25321091	.	+	.	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	intron	25321092	25321175	.	+	.	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	CDS	25321176	25321310	1	+	0	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	exon	25321176	25321310	.	+	.	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
Ledus.S1	AUGUSTUS	stop_codon	25321311	25321313	.	+	0	transcript_id "Ledus.S1G302000.t1"; gene_id "Ledus.S1G302000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2470.t1 is derived from g9333.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18352352	18354316	.	-	.	Ledus.S2G235200
Ledus.S2	AUGUSTUS	transcript	18352352	18354316	.	-	.	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	stop_codon	18352349	18352351	.	-	0	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	CDS	18352352	18352435	1	-	0	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	exon	18352352	18352435	.	-	.	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	intron	18352436	18352538	.	-	.	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	CDS	18352539	18352571	1	-	0	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	exon	18352539	18352571	.	-	.	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	intron	18352572	18352701	.	-	.	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	CDS	18352702	18352849	1	-	1	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	exon	18352702	18352849	.	-	.	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	intron	18352850	18353017	.	-	.	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	CDS	18353018	18353340	1	-	0	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	exon	18353018	18353340	.	-	.	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	intron	18353341	18353986	.	-	.	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	CDS	18353987	18354316	1	-	0	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	exon	18353987	18354316	.	-	.	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
Ledus.S2	AUGUSTUS	start_codon	18354314	18354316	.	-	0	transcript_id "Ledus.S2G235200.t1"; gene_id "Ledus.S2G235200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10878.t1 is derived from g4496.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	288241	290640	.	+	.	Ledus.S4G003400
Ledus.S4	AUGUSTUS	transcript	288241	290640	.	+	.	transcript_id "Ledus.S4G003400.t1"; gene_id "Ledus.S4G003400"
Ledus.S4	AUGUSTUS	start_codon	288241	288243	.	+	0	transcript_id "Ledus.S4G003400.t1"; gene_id "Ledus.S4G003400"
Ledus.S4	AUGUSTUS	CDS	288241	290640	0.89	+	0	transcript_id "Ledus.S4G003400.t1"; gene_id "Ledus.S4G003400"
Ledus.S4	AUGUSTUS	exon	288241	290640	.	+	.	transcript_id "Ledus.S4G003400.t1"; gene_id "Ledus.S4G003400"
Ledus.S4	AUGUSTUS	stop_codon	290641	290643	.	+	0	transcript_id "Ledus.S4G003400.t1"; gene_id "Ledus.S4G003400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg799.t1 is derived from g7660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5200464	5202259	.	-	.	Ledus.S2G068100
Ledus.S2	AUGUSTUS	transcript	5200464	5202259	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	stop_codon	5200461	5200463	.	-	0	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	CDS	5200464	5200573	0.59	-	2	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	exon	5200464	5200573	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	intron	5200574	5200672	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	CDS	5200673	5200739	1	-	0	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	exon	5200673	5200739	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	intron	5200740	5200812	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	CDS	5200813	5200880	1	-	2	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	exon	5200813	5200880	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	intron	5200881	5200985	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	CDS	5200986	5201064	1	-	0	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	exon	5200986	5201064	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	intron	5201065	5201161	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	CDS	5201162	5201271	1	-	2	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	exon	5201162	5201271	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	intron	5201272	5201371	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	CDS	5201372	5201567	1	-	0	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	exon	5201372	5201567	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	intron	5201568	5201648	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	CDS	5201649	5201751	1	-	1	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	exon	5201649	5201751	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	intron	5201752	5201888	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	CDS	5201889	5201985	0.96	-	2	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	exon	5201889	5201985	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	intron	5201986	5202243	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	CDS	5202244	5202259	0.42	-	0	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	exon	5202244	5202259	.	-	.	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
Ledus.S2	AUGUSTUS	start_codon	5202257	5202259	.	-	0	transcript_id "Ledus.S2G068100.t1"; gene_id "Ledus.S2G068100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7750.t1 is derived from g12421.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6005511	6007272	.	+	.	Ledus.S5G052800
Ledus.S5	AUGUSTUS	transcript	6005511	6007272	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	start_codon	6005511	6005513	.	+	0	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6005511	6005663	1	+	0	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6005511	6005663	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6005664	6005838	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6005839	6005971	1	+	0	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6005839	6005971	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6005972	6006222	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6006223	6006308	1	+	2	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6006223	6006308	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6006309	6006409	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6006410	6006499	1	+	0	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6006410	6006499	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6006500	6006593	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6006594	6006752	1	+	0	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6006594	6006752	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6006753	6006842	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6006843	6006893	1	+	0	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6006843	6006893	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6006894	6006980	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6006981	6007062	1	+	0	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6006981	6007062	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6007063	6007183	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6007184	6007272	0.95	+	2	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6007184	6007272	.	+	.	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	stop_codon	6007273	6007275	.	+	0	transcript_id "Ledus.S5G052800.t1"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	transcript	6005511	6007272	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	start_codon	6005511	6005513	.	+	0	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6005511	6005660	0.76	+	0	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6005511	6005660	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6005661	6005838	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6005839	6005971	0.98	+	0	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6005839	6005971	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6005972	6006222	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6006223	6006308	1	+	2	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6006223	6006308	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6006309	6006409	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6006410	6006499	1	+	0	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6006410	6006499	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6006500	6006593	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6006594	6006752	1	+	0	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6006594	6006752	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6006753	6006842	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6006843	6006893	1	+	0	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6006843	6006893	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6006894	6006980	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6006981	6007062	1	+	0	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6006981	6007062	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	intron	6007063	6007183	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	CDS	6007184	6007272	0.93	+	2	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	exon	6007184	6007272	.	+	.	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
Ledus.S5	AUGUSTUS	stop_codon	6007273	6007275	.	+	0	transcript_id "Ledus.S5G052800.t2"; gene_id "Ledus.S5G052800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1272.t1 is derived from g8133.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9004475	9006828	.	+	.	Ledus.S2G115400
Ledus.S2	AUGUSTUS	transcript	9004475	9006828	.	+	.	transcript_id "Ledus.S2G115400.t1"; gene_id "Ledus.S2G115400"
Ledus.S2	AUGUSTUS	start_codon	9004475	9004477	.	+	0	transcript_id "Ledus.S2G115400.t1"; gene_id "Ledus.S2G115400"
Ledus.S2	AUGUSTUS	CDS	9004475	9004744	0.6	+	0	transcript_id "Ledus.S2G115400.t1"; gene_id "Ledus.S2G115400"
Ledus.S2	AUGUSTUS	exon	9004475	9004744	.	+	.	transcript_id "Ledus.S2G115400.t1"; gene_id "Ledus.S2G115400"
Ledus.S2	AUGUSTUS	intron	9004745	9005033	.	+	.	transcript_id "Ledus.S2G115400.t1"; gene_id "Ledus.S2G115400"
Ledus.S2	AUGUSTUS	CDS	9005034	9006022	1	+	0	transcript_id "Ledus.S2G115400.t1"; gene_id "Ledus.S2G115400"
Ledus.S2	AUGUSTUS	exon	9005034	9006022	.	+	.	transcript_id "Ledus.S2G115400.t1"; gene_id "Ledus.S2G115400"
Ledus.S2	AUGUSTUS	intron	9006023	9006122	.	+	.	transcript_id "Ledus.S2G115400.t1"; gene_id "Ledus.S2G115400"
Ledus.S2	AUGUSTUS	CDS	9006123	9006828	0.97	+	1	transcript_id "Ledus.S2G115400.t1"; gene_id "Ledus.S2G115400"
Ledus.S2	AUGUSTUS	exon	9006123	9006828	.	+	.	transcript_id "Ledus.S2G115400.t1"; gene_id "Ledus.S2G115400"
Ledus.S2	AUGUSTUS	stop_codon	9006829	9006831	.	+	0	transcript_id "Ledus.S2G115400.t1"; gene_id "Ledus.S2G115400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9922.t1 is derived from g10952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11230059	11231330	.	+	.	Ledus.S3G139900
Ledus.S3	AUGUSTUS	transcript	11230059	11231330	.	+	.	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	start_codon	11230059	11230061	.	+	0	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	CDS	11230059	11230193	1	+	0	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	exon	11230059	11230193	.	+	.	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	intron	11230194	11230262	.	+	.	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	CDS	11230263	11230432	1	+	0	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	exon	11230263	11230432	.	+	.	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	intron	11230433	11230519	.	+	.	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	CDS	11230520	11230597	1	+	1	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	exon	11230520	11230597	.	+	.	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	intron	11230598	11230685	.	+	.	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	CDS	11230686	11230836	0.97	+	1	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	exon	11230686	11230836	.	+	.	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	intron	11230837	11230943	.	+	.	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	CDS	11230944	11231330	0.99	+	0	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	exon	11230944	11231330	.	+	.	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
Ledus.S3	AUGUSTUS	stop_codon	11231331	11231333	.	+	0	transcript_id "Ledus.S3G139900.t1"; gene_id "Ledus.S3G139900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11160.t1 is derived from g4778.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2249928	2251776	.	+	.	Ledus.S4G031600
Ledus.S4	AUGUSTUS	transcript	2249928	2251776	.	+	.	transcript_id "Ledus.S4G031600.t1"; gene_id "Ledus.S4G031600"
Ledus.S4	AUGUSTUS	start_codon	2249928	2249930	.	+	0	transcript_id "Ledus.S4G031600.t1"; gene_id "Ledus.S4G031600"
Ledus.S4	AUGUSTUS	CDS	2249928	2250146	0.72	+	0	transcript_id "Ledus.S4G031600.t1"; gene_id "Ledus.S4G031600"
Ledus.S4	AUGUSTUS	exon	2249928	2250146	.	+	.	transcript_id "Ledus.S4G031600.t1"; gene_id "Ledus.S4G031600"
Ledus.S4	AUGUSTUS	intron	2250147	2250258	.	+	.	transcript_id "Ledus.S4G031600.t1"; gene_id "Ledus.S4G031600"
Ledus.S4	AUGUSTUS	CDS	2250259	2251776	1	+	0	transcript_id "Ledus.S4G031600.t1"; gene_id "Ledus.S4G031600"
Ledus.S4	AUGUSTUS	exon	2250259	2251776	.	+	.	transcript_id "Ledus.S4G031600.t1"; gene_id "Ledus.S4G031600"
Ledus.S4	AUGUSTUS	stop_codon	2251777	2251779	.	+	0	transcript_id "Ledus.S4G031600.t1"; gene_id "Ledus.S4G031600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5815.t1 is derived from g3257.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27073071	27074630	.	-	.	Ledus.S1G323600
Ledus.S1	AUGUSTUS	transcript	27073071	27074630	.	-	.	transcript_id "Ledus.S1G323600.t1"; gene_id "Ledus.S1G323600"
Ledus.S1	AUGUSTUS	stop_codon	27073068	27073070	.	-	0	transcript_id "Ledus.S1G323600.t1"; gene_id "Ledus.S1G323600"
Ledus.S1	AUGUSTUS	CDS	27073071	27074630	0.97	-	0	transcript_id "Ledus.S1G323600.t1"; gene_id "Ledus.S1G323600"
Ledus.S1	AUGUSTUS	exon	27073071	27074630	.	-	.	transcript_id "Ledus.S1G323600.t1"; gene_id "Ledus.S1G323600"
Ledus.S1	AUGUSTUS	start_codon	27074628	27074630	.	-	0	transcript_id "Ledus.S1G323600.t1"; gene_id "Ledus.S1G323600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11732.t1 is derived from g5351.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6323861	6324328	.	-	.	Ledus.S4G088800
Ledus.S4	AUGUSTUS	transcript	6323861	6324328	.	-	.	transcript_id "Ledus.S4G088800.t1"; gene_id "Ledus.S4G088800"
Ledus.S4	AUGUSTUS	stop_codon	6323858	6323860	.	-	0	transcript_id "Ledus.S4G088800.t1"; gene_id "Ledus.S4G088800"
Ledus.S4	AUGUSTUS	CDS	6323861	6323936	0.86	-	1	transcript_id "Ledus.S4G088800.t1"; gene_id "Ledus.S4G088800"
Ledus.S4	AUGUSTUS	exon	6323861	6323936	.	-	.	transcript_id "Ledus.S4G088800.t1"; gene_id "Ledus.S4G088800"
Ledus.S4	AUGUSTUS	intron	6323937	6324049	.	-	.	transcript_id "Ledus.S4G088800.t1"; gene_id "Ledus.S4G088800"
Ledus.S4	AUGUSTUS	CDS	6324050	6324120	0.83	-	0	transcript_id "Ledus.S4G088800.t1"; gene_id "Ledus.S4G088800"
Ledus.S4	AUGUSTUS	exon	6324050	6324120	.	-	.	transcript_id "Ledus.S4G088800.t1"; gene_id "Ledus.S4G088800"
Ledus.S4	AUGUSTUS	intron	6324121	6324265	.	-	.	transcript_id "Ledus.S4G088800.t1"; gene_id "Ledus.S4G088800"
Ledus.S4	AUGUSTUS	CDS	6324266	6324328	0.95	-	0	transcript_id "Ledus.S4G088800.t1"; gene_id "Ledus.S4G088800"
Ledus.S4	AUGUSTUS	exon	6324266	6324328	.	-	.	transcript_id "Ledus.S4G088800.t1"; gene_id "Ledus.S4G088800"
Ledus.S4	AUGUSTUS	start_codon	6324326	6324328	.	-	0	transcript_id "Ledus.S4G088800.t1"; gene_id "Ledus.S4G088800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg543.t1 is derived from g7404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3140223	3143970	.	-	.	Ledus.S2G042500
Ledus.S2	AUGUSTUS	transcript	3140223	3143970	.	-	.	transcript_id "Ledus.S2G042500.t1"; gene_id "Ledus.S2G042500"
Ledus.S2	AUGUSTUS	stop_codon	3140220	3140222	.	-	0	transcript_id "Ledus.S2G042500.t1"; gene_id "Ledus.S2G042500"
Ledus.S2	AUGUSTUS	CDS	3140223	3143642	1	-	0	transcript_id "Ledus.S2G042500.t1"; gene_id "Ledus.S2G042500"
Ledus.S2	AUGUSTUS	exon	3140223	3143642	.	-	.	transcript_id "Ledus.S2G042500.t1"; gene_id "Ledus.S2G042500"
Ledus.S2	AUGUSTUS	intron	3143643	3143787	.	-	.	transcript_id "Ledus.S2G042500.t1"; gene_id "Ledus.S2G042500"
Ledus.S2	AUGUSTUS	CDS	3143788	3143970	0.74	-	0	transcript_id "Ledus.S2G042500.t1"; gene_id "Ledus.S2G042500"
Ledus.S2	AUGUSTUS	exon	3143788	3143970	.	-	.	transcript_id "Ledus.S2G042500.t1"; gene_id "Ledus.S2G042500"
Ledus.S2	AUGUSTUS	start_codon	3143968	3143970	.	-	0	transcript_id "Ledus.S2G042500.t1"; gene_id "Ledus.S2G042500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8753.t1 is derived from g9783.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1826180	1830891	.	+	.	Ledus.S3G023000
Ledus.S3	AUGUSTUS	transcript	1826180	1830891	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	start_codon	1826180	1826182	.	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1826180	1826305	0.74	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1826180	1826305	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1826306	1826603	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1826604	1826648	1	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1826604	1826648	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1826649	1826745	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1826746	1826868	1	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1826746	1826868	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1826869	1826975	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1826976	1827083	1	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1826976	1827083	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1827084	1827171	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1827172	1827285	1	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1827172	1827285	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1827286	1827378	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1827379	1827552	1	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1827379	1827552	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1827553	1827638	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1827639	1827776	1	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1827639	1827776	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1827777	1827876	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1827877	1827984	1	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1827877	1827984	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1827985	1828128	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1828129	1828236	1	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1828129	1828236	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1828237	1828314	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1828315	1828463	1	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1828315	1828463	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1828464	1828578	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1828579	1828732	1	+	1	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1828579	1828732	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1828733	1828856	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1828857	1829023	1	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1828857	1829023	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1829024	1829164	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1829165	1829362	1	+	1	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1829165	1829362	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1829363	1829551	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1829552	1829735	1	+	1	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1829552	1829735	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1829736	1829973	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1829974	1830057	1	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1829974	1830057	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1830058	1830188	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1830189	1830376	1	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1830189	1830376	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1830377	1830508	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1830509	1830568	1	+	1	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1830509	1830568	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	intron	1830569	1830683	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	CDS	1830684	1830891	1	+	1	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	exon	1830684	1830891	.	+	.	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
Ledus.S3	AUGUSTUS	stop_codon	1830892	1830894	.	+	0	transcript_id "Ledus.S3G023000.t1"; gene_id "Ledus.S3G023000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8229.t1 is derived from g12900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10060389	10062031	.	+	.	Ledus.S5G100700
Ledus.S5	AUGUSTUS	transcript	10060389	10062031	.	+	.	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	start_codon	10060389	10060391	.	+	0	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	CDS	10060389	10060503	1	+	0	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	exon	10060389	10060503	.	+	.	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	intron	10060504	10060971	.	+	.	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	CDS	10060972	10061174	1	+	2	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	exon	10060972	10061174	.	+	.	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	intron	10061175	10061262	.	+	.	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	CDS	10061263	10061352	1	+	0	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	exon	10061263	10061352	.	+	.	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	intron	10061353	10061463	.	+	.	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	CDS	10061464	10061535	1	+	0	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	exon	10061464	10061535	.	+	.	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	intron	10061536	10061695	.	+	.	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	CDS	10061696	10061825	1	+	0	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	exon	10061696	10061825	.	+	.	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	intron	10061826	10061936	.	+	.	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	CDS	10061937	10062031	0.77	+	2	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	exon	10061937	10062031	.	+	.	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
Ledus.S5	AUGUSTUS	stop_codon	10062032	10062034	.	+	0	transcript_id "Ledus.S5G100700.t1"; gene_id "Ledus.S5G100700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6999.t1 is derived from g6530.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	729662	731504	.	+	.	Ledus.C7G006000
Ledus.C7	AUGUSTUS	transcript	729662	731504	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	start_codon	729662	729664	.	+	0	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	729662	729682	0.6	+	0	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	729662	729682	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	729683	729763	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	729764	729844	1	+	0	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	729764	729844	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	729845	730150	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	730151	730282	1	+	0	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	730151	730282	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	730283	730440	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	730441	730500	1	+	0	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	730441	730500	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	730501	730622	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	730623	730699	1	+	0	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	730623	730699	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	730700	730916	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	730917	730973	1	+	1	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	730917	730973	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	730974	731062	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	731063	731129	1	+	1	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	731063	731129	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	731130	731227	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	731228	731291	1	+	0	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	731228	731291	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	731292	731451	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	731452	731504	1	+	2	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	731452	731504	.	+	.	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	stop_codon	731505	731507	.	+	0	transcript_id "Ledus.C7G006000.t1"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	transcript	729662	731504	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	start_codon	729662	729664	.	+	0	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	729662	729682	0.42	+	0	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	729662	729682	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	729683	729766	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	729767	729844	0.74	+	0	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	729767	729844	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	729845	730150	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	730151	730282	1	+	0	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	730151	730282	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	730283	730440	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	730441	730500	1	+	0	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	730441	730500	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	730501	730622	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	730623	730699	1	+	0	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	730623	730699	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	730700	730916	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	730917	730973	1	+	1	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	730917	730973	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	730974	731062	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	731063	731129	1	+	1	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	731063	731129	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	731130	731227	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	731228	731291	1	+	0	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	731228	731291	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	intron	731292	731451	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	CDS	731452	731504	1	+	2	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	exon	731452	731504	.	+	.	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
Ledus.C7	AUGUSTUS	stop_codon	731505	731507	.	+	0	transcript_id "Ledus.C7G006000.t2"; gene_id "Ledus.C7G006000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10187.t1 is derived from g11217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13491328	13493885	.	-	.	Ledus.S3G166400
Ledus.S3	AUGUSTUS	transcript	13491328	13493885	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	stop_codon	13491325	13491327	.	-	0	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13491328	13491478	0.99	-	1	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13491328	13491478	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13491479	13491561	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13491562	13491659	1	-	0	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13491562	13491659	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13491660	13491747	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13491748	13491844	1	-	1	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13491748	13491844	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13491845	13491931	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13491932	13492002	1	-	0	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13491932	13492002	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13492003	13492103	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13492104	13492162	0.98	-	2	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13492104	13492162	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13492163	13492246	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13492247	13492323	1	-	1	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13492247	13492323	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13492324	13492464	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13492465	13492500	1	-	1	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13492465	13492500	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13492501	13492813	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13492814	13492884	0.68	-	0	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13492814	13492884	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13492885	13493028	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13493029	13493100	0.94	-	0	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13493029	13493100	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13493101	13493182	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13493183	13493238	1	-	2	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13493183	13493238	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13493239	13493327	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13493328	13493389	1	-	1	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13493328	13493389	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13493390	13493471	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13493472	13493527	0.88	-	0	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13493472	13493527	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13493528	13493611	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13493612	13493710	0.88	-	0	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13493612	13493710	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	intron	13493711	13493819	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	CDS	13493820	13493885	0.52	-	0	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	exon	13493820	13493885	.	-	.	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
Ledus.S3	AUGUSTUS	start_codon	13493883	13493885	.	-	0	transcript_id "Ledus.S3G166400.t1"; gene_id "Ledus.S3G166400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4346.t1 is derived from g1782.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16512207	16512640	.	-	.	Ledus.S1G176700
Ledus.S1	AUGUSTUS	transcript	16512207	16512640	.	-	.	transcript_id "Ledus.S1G176700.t1"; gene_id "Ledus.S1G176700"
Ledus.S1	AUGUSTUS	stop_codon	16512204	16512206	.	-	0	transcript_id "Ledus.S1G176700.t1"; gene_id "Ledus.S1G176700"
Ledus.S1	AUGUSTUS	CDS	16512207	16512234	1	-	1	transcript_id "Ledus.S1G176700.t1"; gene_id "Ledus.S1G176700"
Ledus.S1	AUGUSTUS	exon	16512207	16512234	.	-	.	transcript_id "Ledus.S1G176700.t1"; gene_id "Ledus.S1G176700"
Ledus.S1	AUGUSTUS	intron	16512235	16512316	.	-	.	transcript_id "Ledus.S1G176700.t1"; gene_id "Ledus.S1G176700"
Ledus.S1	AUGUSTUS	CDS	16512317	16512439	1	-	1	transcript_id "Ledus.S1G176700.t1"; gene_id "Ledus.S1G176700"
Ledus.S1	AUGUSTUS	exon	16512317	16512439	.	-	.	transcript_id "Ledus.S1G176700.t1"; gene_id "Ledus.S1G176700"
Ledus.S1	AUGUSTUS	intron	16512440	16512548	.	-	.	transcript_id "Ledus.S1G176700.t1"; gene_id "Ledus.S1G176700"
Ledus.S1	AUGUSTUS	CDS	16512549	16512640	0.78	-	0	transcript_id "Ledus.S1G176700.t1"; gene_id "Ledus.S1G176700"
Ledus.S1	AUGUSTUS	exon	16512549	16512640	.	-	.	transcript_id "Ledus.S1G176700.t1"; gene_id "Ledus.S1G176700"
Ledus.S1	AUGUSTUS	start_codon	16512638	16512640	.	-	0	transcript_id "Ledus.S1G176700.t1"; gene_id "Ledus.S1G176700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg141.t1 is derived from g7002.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	255971	257461	.	-	.	Ledus.S2G002300
Ledus.S2	AUGUSTUS	transcript	255971	257461	.	-	.	transcript_id "Ledus.S2G002300.t1"; gene_id "Ledus.S2G002300"
Ledus.S2	AUGUSTUS	stop_codon	255968	255970	.	-	0	transcript_id "Ledus.S2G002300.t1"; gene_id "Ledus.S2G002300"
Ledus.S2	AUGUSTUS	CDS	255971	257461	0.99	-	0	transcript_id "Ledus.S2G002300.t1"; gene_id "Ledus.S2G002300"
Ledus.S2	AUGUSTUS	exon	255971	257461	.	-	.	transcript_id "Ledus.S2G002300.t1"; gene_id "Ledus.S2G002300"
Ledus.S2	AUGUSTUS	start_codon	257459	257461	.	-	0	transcript_id "Ledus.S2G002300.t1"; gene_id "Ledus.S2G002300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9369.t1 is derived from g10399.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	6405829	6408470	.	-	.	Ledus.S3G084600
Ledus.S3	AUGUSTUS	transcript	6405829	6408470	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	stop_codon	6405826	6405828	.	-	0	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	CDS	6405829	6405865	0.99	-	1	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	exon	6405829	6405865	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	intron	6405866	6405955	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	CDS	6405956	6406026	1	-	0	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	exon	6405956	6406026	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	intron	6406027	6406131	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	CDS	6406132	6406177	1	-	1	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	exon	6406132	6406177	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	intron	6406178	6406386	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	CDS	6406387	6406434	0.92	-	1	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	exon	6406387	6406434	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	intron	6406435	6406553	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	CDS	6406554	6406668	0.85	-	2	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	exon	6406554	6406668	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	intron	6406669	6406759	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	CDS	6406760	6406852	1	-	2	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	exon	6406760	6406852	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	intron	6406853	6407099	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	CDS	6407100	6407157	1	-	0	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	exon	6407100	6407157	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	intron	6407158	6407286	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	CDS	6407287	6407425	1	-	1	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	exon	6407287	6407425	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	intron	6407426	6407569	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	CDS	6407570	6407701	0.95	-	1	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	exon	6407570	6407701	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	intron	6407702	6407792	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	CDS	6407793	6407813	0.41	-	1	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	exon	6407793	6407813	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	intron	6407814	6408330	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	CDS	6408331	6408470	0.4	-	0	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	exon	6408331	6408470	.	-	.	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
Ledus.S3	AUGUSTUS	start_codon	6408468	6408470	.	-	0	transcript_id "Ledus.S3G084600.t1"; gene_id "Ledus.S3G084600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8642.t1 is derived from g9672.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1054680	1057579	.	-	.	Ledus.S3G011900
Ledus.S3	AUGUSTUS	transcript	1054680	1057579	.	-	.	transcript_id "Ledus.S3G011900.t1"; gene_id "Ledus.S3G011900"
Ledus.S3	AUGUSTUS	stop_codon	1054677	1054679	.	-	0	transcript_id "Ledus.S3G011900.t1"; gene_id "Ledus.S3G011900"
Ledus.S3	AUGUSTUS	CDS	1054680	1055492	0.96	-	0	transcript_id "Ledus.S3G011900.t1"; gene_id "Ledus.S3G011900"
Ledus.S3	AUGUSTUS	exon	1054680	1055492	.	-	.	transcript_id "Ledus.S3G011900.t1"; gene_id "Ledus.S3G011900"
Ledus.S3	AUGUSTUS	intron	1055493	1055626	.	-	.	transcript_id "Ledus.S3G011900.t1"; gene_id "Ledus.S3G011900"
Ledus.S3	AUGUSTUS	CDS	1055627	1056097	1	-	0	transcript_id "Ledus.S3G011900.t1"; gene_id "Ledus.S3G011900"
Ledus.S3	AUGUSTUS	exon	1055627	1056097	.	-	.	transcript_id "Ledus.S3G011900.t1"; gene_id "Ledus.S3G011900"
Ledus.S3	AUGUSTUS	intron	1056098	1056223	.	-	.	transcript_id "Ledus.S3G011900.t1"; gene_id "Ledus.S3G011900"
Ledus.S3	AUGUSTUS	CDS	1056224	1057579	0.98	-	0	transcript_id "Ledus.S3G011900.t1"; gene_id "Ledus.S3G011900"
Ledus.S3	AUGUSTUS	exon	1056224	1057579	.	-	.	transcript_id "Ledus.S3G011900.t1"; gene_id "Ledus.S3G011900"
Ledus.S3	AUGUSTUS	start_codon	1057577	1057579	.	-	0	transcript_id "Ledus.S3G011900.t1"; gene_id "Ledus.S3G011900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7033.t1 is derived from g6564.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	942606	943771	.	-	.	Ledus.C7G009400
Ledus.C7	AUGUSTUS	transcript	942606	943771	.	-	.	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	stop_codon	942603	942605	.	-	0	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	CDS	942606	942756	1	-	1	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	exon	942606	942756	.	-	.	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	intron	942757	942859	.	-	.	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	CDS	942860	943041	1	-	0	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	exon	942860	943041	.	-	.	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	intron	943042	943203	.	-	.	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	CDS	943204	943313	1	-	2	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	exon	943204	943313	.	-	.	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	intron	943314	943463	.	-	.	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	CDS	943464	943544	0.59	-	2	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	exon	943464	943544	.	-	.	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	intron	943545	943665	.	-	.	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	CDS	943666	943771	0.59	-	0	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	exon	943666	943771	.	-	.	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
Ledus.C7	AUGUSTUS	start_codon	943769	943771	.	-	0	transcript_id "Ledus.C7G009400.t1"; gene_id "Ledus.C7G009400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1882.t1 is derived from g8745.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13169422	13169703	.	+	.	Ledus.S2G176400
Ledus.S2	AUGUSTUS	transcript	13169422	13169703	.	+	.	transcript_id "Ledus.S2G176400.t1"; gene_id "Ledus.S2G176400"
Ledus.S2	AUGUSTUS	start_codon	13169422	13169424	.	+	0	transcript_id "Ledus.S2G176400.t1"; gene_id "Ledus.S2G176400"
Ledus.S2	AUGUSTUS	CDS	13169422	13169703	0.89	+	0	transcript_id "Ledus.S2G176400.t1"; gene_id "Ledus.S2G176400"
Ledus.S2	AUGUSTUS	exon	13169422	13169703	.	+	.	transcript_id "Ledus.S2G176400.t1"; gene_id "Ledus.S2G176400"
Ledus.S2	AUGUSTUS	stop_codon	13169704	13169706	.	+	0	transcript_id "Ledus.S2G176400.t1"; gene_id "Ledus.S2G176400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4613.t1 is derived from g2050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18237892	18238485	.	+	.	Ledus.S1G203400
Ledus.S1	AUGUSTUS	transcript	18237892	18238485	.	+	.	transcript_id "Ledus.S1G203400.t1"; gene_id "Ledus.S1G203400"
Ledus.S1	AUGUSTUS	start_codon	18237892	18237894	.	+	0	transcript_id "Ledus.S1G203400.t1"; gene_id "Ledus.S1G203400"
Ledus.S1	AUGUSTUS	CDS	18237892	18238485	0.88	+	0	transcript_id "Ledus.S1G203400.t1"; gene_id "Ledus.S1G203400"
Ledus.S1	AUGUSTUS	exon	18237892	18238485	.	+	.	transcript_id "Ledus.S1G203400.t1"; gene_id "Ledus.S1G203400"
Ledus.S1	AUGUSTUS	stop_codon	18238486	18238488	.	+	0	transcript_id "Ledus.S1G203400.t1"; gene_id "Ledus.S1G203400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12828.t1 is derived from g6450.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	15252468	15252731	.	-	.	Ledus.S4G198400
Ledus.S4	AUGUSTUS	transcript	15252468	15252731	.	-	.	transcript_id "Ledus.S4G198400.t1"; gene_id "Ledus.S4G198400"
Ledus.S4	AUGUSTUS	stop_codon	15252465	15252467	.	-	0	transcript_id "Ledus.S4G198400.t1"; gene_id "Ledus.S4G198400"
Ledus.S4	AUGUSTUS	CDS	15252468	15252731	0.97	-	0	transcript_id "Ledus.S4G198400.t1"; gene_id "Ledus.S4G198400"
Ledus.S4	AUGUSTUS	exon	15252468	15252731	.	-	.	transcript_id "Ledus.S4G198400.t1"; gene_id "Ledus.S4G198400"
Ledus.S4	AUGUSTUS	start_codon	15252729	15252731	.	-	0	transcript_id "Ledus.S4G198400.t1"; gene_id "Ledus.S4G198400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2544.t1 is derived from g9407.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18847936	18856604	.	-	.	Ledus.S2G242600
Ledus.S2	AUGUSTUS	transcript	18847936	18856604	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	stop_codon	18847933	18847935	.	-	0	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18847936	18848005	1	-	1	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18847936	18848005	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18848006	18848103	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18848104	18848187	1	-	1	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18848104	18848187	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18848188	18848473	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18848474	18849035	1	-	2	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18848474	18849035	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18849036	18849146	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18849147	18849332	0.9	-	2	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18849147	18849332	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18849333	18849431	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18849432	18849627	0.9	-	0	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18849432	18849627	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18849628	18850910	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18850911	18851125	1	-	2	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18850911	18851125	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18851126	18851221	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18851222	18851382	1	-	1	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18851222	18851382	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18851383	18851504	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18851505	18851609	1	-	1	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18851505	18851609	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18851610	18851736	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18851737	18851781	1	-	1	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18851737	18851781	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18851782	18851896	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18851897	18852220	1	-	1	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18851897	18852220	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18852221	18852302	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18852303	18852448	1	-	0	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18852303	18852448	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18852449	18852566	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18852567	18852650	1	-	0	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18852567	18852650	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18852651	18852740	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18852741	18852819	1	-	1	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18852741	18852819	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18852820	18853038	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18853039	18853118	1	-	0	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18853039	18853118	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18853119	18853290	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18853291	18853342	1	-	1	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18853291	18853342	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18853343	18853897	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18853898	18853956	0.68	-	0	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18853898	18853956	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18853957	18854064	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18854065	18854140	0.15	-	1	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18854065	18854140	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18854141	18854350	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18854351	18854465	0.2	-	2	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18854351	18854465	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18854466	18854754	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18854755	18854820	0.51	-	2	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18854755	18854820	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18854821	18854887	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18854888	18856604	0.36	-	0	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18854888	18856604	.	-	.	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	start_codon	18856602	18856604	.	-	0	transcript_id "Ledus.S2G242600.t1"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	transcript	18847936	18856604	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	stop_codon	18847933	18847935	.	-	0	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18847936	18848005	1	-	1	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18847936	18848005	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18848006	18848103	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18848104	18848187	1	-	1	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18848104	18848187	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18848188	18848397	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18848398	18848431	0.99	-	2	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18848398	18848431	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18848432	18848513	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18848514	18849035	0.99	-	2	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18848514	18849035	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18849036	18849146	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18849147	18849332	0.91	-	2	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18849147	18849332	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18849333	18849431	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18849432	18849627	0.91	-	0	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18849432	18849627	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18849628	18850910	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18850911	18851125	1	-	2	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18850911	18851125	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18851126	18851221	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18851222	18851382	1	-	1	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18851222	18851382	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18851383	18851504	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18851505	18851609	1	-	1	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18851505	18851609	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18851610	18851736	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18851737	18851781	1	-	1	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18851737	18851781	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18851782	18851896	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18851897	18852220	1	-	1	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18851897	18852220	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18852221	18852302	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18852303	18852448	1	-	0	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18852303	18852448	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18852449	18852566	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18852567	18852650	1	-	0	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18852567	18852650	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18852651	18852740	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18852741	18852819	1	-	1	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18852741	18852819	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18852820	18853038	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18853039	18853118	1	-	0	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18853039	18853118	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18853119	18853290	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18853291	18853342	1	-	1	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18853291	18853342	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18853343	18853897	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18853898	18853956	0.6	-	0	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18853898	18853956	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18853957	18854064	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18854065	18854140	0.14	-	1	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18854065	18854140	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18854141	18854350	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18854351	18854465	0.17	-	2	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18854351	18854465	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18854466	18854754	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18854755	18854820	0.43	-	2	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18854755	18854820	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	intron	18854821	18854887	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	CDS	18854888	18856604	0.3	-	0	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	exon	18854888	18856604	.	-	.	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
Ledus.S2	AUGUSTUS	start_codon	18856602	18856604	.	-	0	transcript_id "Ledus.S2G242600.t2"; gene_id "Ledus.S2G242600"
# This transcript jg3904.t2 is derived from g1340.t4 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3904.t3 is derived from g1340.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg3904.t4 is derived from g1340.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3905.t1 is derived from g1341.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13517731	13519424	.	+	.	Ledus.S1G132600
Ledus.S1	AUGUSTUS	transcript	13517731	13519424	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	start_codon	13517731	13517733	.	+	0	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	CDS	13517731	13517796	0.96	+	0	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	exon	13517731	13517796	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	intron	13517797	13517880	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	CDS	13517881	13518141	1	+	0	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	exon	13517881	13518141	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	intron	13518142	13518214	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	CDS	13518215	13518257	1	+	0	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	exon	13518215	13518257	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	intron	13518258	13518335	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	CDS	13518336	13518632	1	+	2	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	exon	13518336	13518632	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	intron	13518633	13518716	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	CDS	13518717	13518846	1	+	2	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	exon	13518717	13518846	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	intron	13518847	13518928	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	CDS	13518929	13519111	1	+	1	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	exon	13518929	13519111	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	intron	13519112	13519198	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	CDS	13519199	13519424	0.94	+	1	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	exon	13519199	13519424	.	+	.	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
Ledus.S1	AUGUSTUS	stop_codon	13519425	13519427	.	+	0	transcript_id "Ledus.S1G132600.t1"; gene_id "Ledus.S1G132600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6455.t1 is derived from g3898.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31335396	31345982	.	+	.	Ledus.S1G387600
Ledus.S1	AUGUSTUS	transcript	31335396	31345982	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	start_codon	31335396	31335398	.	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31335396	31335512	0.96	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31335396	31335512	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31335513	31336293	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31336294	31336362	1	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31336294	31336362	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31336363	31336571	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31336572	31336614	1	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31336572	31336614	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31336615	31336792	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31336793	31337035	1	+	2	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31336793	31337035	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31337036	31337447	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31337448	31337518	1	+	2	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31337448	31337518	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31337519	31337851	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31337852	31338041	1	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31337852	31338041	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31338042	31338191	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31338192	31339296	0.97	+	2	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31338192	31339296	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31339297	31339407	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31339408	31339613	0.99	+	1	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31339408	31339613	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31339614	31339822	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31339823	31340060	1	+	2	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31339823	31340060	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31340061	31340166	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31340167	31340506	0.88	+	1	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31340167	31340506	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31340507	31340608	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31340609	31340818	1	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31340609	31340818	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31340819	31341039	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31341040	31341132	1	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31341040	31341132	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31341133	31341261	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31341262	31341468	1	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31341262	31341468	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31341469	31341644	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31341645	31341851	1	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31341645	31341851	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31341852	31341999	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31342000	31342110	0.96	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31342000	31342110	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31342111	31342197	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31342198	31342477	0.96	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31342198	31342477	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31342478	31342582	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31342583	31342797	1	+	2	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31342583	31342797	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31342798	31342923	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31342924	31343064	1	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31342924	31343064	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31343065	31343250	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31343251	31343322	1	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31343251	31343322	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31343323	31343503	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31343504	31343785	0.54	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31343504	31343785	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31343786	31344246	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31344247	31344612	0.71	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31344247	31344612	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31344613	31345046	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31345047	31345409	0.81	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31345047	31345409	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31345410	31345665	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31345666	31345759	0.66	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31345666	31345759	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	intron	31345760	31345962	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	CDS	31345963	31345982	0.92	+	2	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	exon	31345963	31345982	.	+	.	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
Ledus.S1	AUGUSTUS	stop_codon	31345983	31345985	.	+	0	transcript_id "Ledus.S1G387600.t1"; gene_id "Ledus.S1G387600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3706.t1 is derived from g1142.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11026406	11032226	.	-	.	Ledus.S1G112700
Ledus.S1	AUGUSTUS	transcript	11027269	11032226	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	stop_codon	11027266	11027268	.	-	0	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11027269	11027442	0.76	-	0	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11027269	11027442	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11027443	11027580	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11027581	11027760	1	-	0	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11027581	11027760	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11027761	11028094	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11028095	11028163	1	-	0	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11028095	11028163	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11028164	11028266	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11028267	11028351	0.97	-	1	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11028267	11028351	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11028352	11028462	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11028463	11029147	0.99	-	2	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11028463	11029147	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11029148	11029295	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11029296	11029709	0.78	-	2	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11029296	11029709	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11029710	11029937	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11029938	11030029	1	-	1	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11029938	11030029	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11030030	11030316	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11030317	11030468	1	-	0	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11030317	11030468	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11030469	11030637	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11030638	11030754	1	-	0	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11030638	11030754	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11030755	11030926	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11030927	11031085	1	-	0	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11030927	11031085	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11031086	11031232	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11031233	11031693	1	-	2	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11031233	11031693	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11031694	11031913	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11031914	11032226	1	-	0	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11031914	11032226	.	-	.	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	start_codon	11032224	11032226	.	-	0	transcript_id "Ledus.S1G112700.t1"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	transcript	11026406	11032226	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	stop_codon	11026403	11026405	.	-	0	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11026406	11026512	1	-	2	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11026406	11026512	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11026513	11026815	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11026816	11026860	0.44	-	2	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11026816	11026860	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11026861	11026942	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11026943	11027070	0.43	-	1	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11026943	11027070	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11027071	11027351	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11027352	11027398	0.72	-	0	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11027352	11027398	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11027399	11027580	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11027581	11027760	1	-	0	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11027581	11027760	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11027761	11028094	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11028095	11028163	1	-	0	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11028095	11028163	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11028164	11028266	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11028267	11028351	0.94	-	1	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11028267	11028351	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11028352	11028462	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11028463	11029147	1	-	2	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11028463	11029147	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11029148	11029295	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11029296	11029709	0.83	-	2	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11029296	11029709	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11029710	11029937	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11029938	11030029	1	-	1	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11029938	11030029	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11030030	11030316	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11030317	11030468	1	-	0	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11030317	11030468	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11030469	11030637	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11030638	11030754	1	-	0	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11030638	11030754	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11030755	11030926	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11030927	11031085	1	-	0	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11030927	11031085	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11031086	11031232	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11031233	11031693	1	-	2	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11031233	11031693	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	intron	11031694	11031913	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	CDS	11031914	11032226	0.98	-	0	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	exon	11031914	11032226	.	-	.	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
Ledus.S1	AUGUSTUS	start_codon	11032224	11032226	.	-	0	transcript_id "Ledus.S1G112700.t2"; gene_id "Ledus.S1G112700"
# This transcript jg8668.t2 is derived from g9698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8669.t1 is derived from g9699.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1292621	1294592	.	+	.	Ledus.S3G014600
Ledus.S3	AUGUSTUS	transcript	1292621	1294592	.	+	.	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	start_codon	1292621	1292623	.	+	0	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	CDS	1292621	1292671	1	+	0	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	exon	1292621	1292671	.	+	.	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	intron	1292672	1293168	.	+	.	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	CDS	1293169	1293235	0.35	+	0	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	exon	1293169	1293235	.	+	.	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	intron	1293236	1293854	.	+	.	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	CDS	1293855	1294069	0.56	+	2	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	exon	1293855	1294069	.	+	.	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	intron	1294070	1294154	.	+	.	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	CDS	1294155	1294592	0.99	+	0	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	exon	1294155	1294592	.	+	.	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
Ledus.S3	AUGUSTUS	stop_codon	1294593	1294595	.	+	0	transcript_id "Ledus.S3G014600.t1"; gene_id "Ledus.S3G014600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8027.t1 is derived from g12698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8584153	8585373	.	+	.	Ledus.S5G080500
Ledus.S5	AUGUSTUS	transcript	8584153	8585373	.	+	.	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	start_codon	8584153	8584155	.	+	0	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	CDS	8584153	8584632	0.95	+	0	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	exon	8584153	8584632	.	+	.	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	intron	8584633	8584726	.	+	.	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	CDS	8584727	8584918	0.98	+	0	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	exon	8584727	8584918	.	+	.	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	intron	8584919	8585019	.	+	.	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	CDS	8585020	8585142	0.95	+	0	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	exon	8585020	8585142	.	+	.	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	intron	8585143	8585253	.	+	.	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	CDS	8585254	8585373	1	+	0	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	exon	8585254	8585373	.	+	.	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
Ledus.S5	AUGUSTUS	stop_codon	8585374	8585376	.	+	0	transcript_id "Ledus.S5G080500.t1"; gene_id "Ledus.S5G080500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1760.t1 is derived from g8622.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12382671	12382940	.	+	.	Ledus.S2G164200
Ledus.S2	AUGUSTUS	transcript	12382671	12382940	.	+	.	transcript_id "Ledus.S2G164200.t1"; gene_id "Ledus.S2G164200"
Ledus.S2	AUGUSTUS	start_codon	12382671	12382673	.	+	0	transcript_id "Ledus.S2G164200.t1"; gene_id "Ledus.S2G164200"
Ledus.S2	AUGUSTUS	CDS	12382671	12382940	0.8	+	0	transcript_id "Ledus.S2G164200.t1"; gene_id "Ledus.S2G164200"
Ledus.S2	AUGUSTUS	exon	12382671	12382940	.	+	.	transcript_id "Ledus.S2G164200.t1"; gene_id "Ledus.S2G164200"
Ledus.S2	AUGUSTUS	stop_codon	12382941	12382943	.	+	0	transcript_id "Ledus.S2G164200.t1"; gene_id "Ledus.S2G164200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11644.t1 is derived from g5263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5716031	5717080	.	-	.	Ledus.S4G080000
Ledus.S4	AUGUSTUS	transcript	5716031	5717080	.	-	.	transcript_id "Ledus.S4G080000.t1"; gene_id "Ledus.S4G080000"
Ledus.S4	AUGUSTUS	stop_codon	5716028	5716030	.	-	0	transcript_id "Ledus.S4G080000.t1"; gene_id "Ledus.S4G080000"
Ledus.S4	AUGUSTUS	CDS	5716031	5717080	0.77	-	0	transcript_id "Ledus.S4G080000.t1"; gene_id "Ledus.S4G080000"
Ledus.S4	AUGUSTUS	exon	5716031	5717080	.	-	.	transcript_id "Ledus.S4G080000.t1"; gene_id "Ledus.S4G080000"
Ledus.S4	AUGUSTUS	start_codon	5717078	5717080	.	-	0	transcript_id "Ledus.S4G080000.t1"; gene_id "Ledus.S4G080000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg967.t1 is derived from g7828.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6376971	6378784	.	-	.	Ledus.S2G084900
Ledus.S2	AUGUSTUS	transcript	6376971	6378784	.	-	.	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	stop_codon	6376968	6376970	.	-	0	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	CDS	6376971	6377031	1	-	1	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	exon	6376971	6377031	.	-	.	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	intron	6377032	6377119	.	-	.	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	CDS	6377120	6377425	1	-	1	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	exon	6377120	6377425	.	-	.	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	intron	6377426	6377503	.	-	.	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	CDS	6377504	6377739	0.99	-	0	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	exon	6377504	6377739	.	-	.	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	intron	6377740	6377824	.	-	.	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	CDS	6377825	6377950	1	-	0	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	exon	6377825	6377950	.	-	.	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	intron	6377951	6378071	.	-	.	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	CDS	6378072	6378180	0.88	-	1	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	exon	6378072	6378180	.	-	.	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	intron	6378181	6378290	.	-	.	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	CDS	6378291	6378784	0.84	-	0	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	exon	6378291	6378784	.	-	.	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
Ledus.S2	AUGUSTUS	start_codon	6378782	6378784	.	-	0	transcript_id "Ledus.S2G084900.t1"; gene_id "Ledus.S2G084900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4767.t1 is derived from g2205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19663731	19664919	.	-	.	Ledus.S1G218800
Ledus.S1	AUGUSTUS	transcript	19663731	19664919	.	-	.	transcript_id "Ledus.S1G218800.t1"; gene_id "Ledus.S1G218800"
Ledus.S1	AUGUSTUS	stop_codon	19663728	19663730	.	-	0	transcript_id "Ledus.S1G218800.t1"; gene_id "Ledus.S1G218800"
Ledus.S1	AUGUSTUS	CDS	19663731	19664597	1	-	0	transcript_id "Ledus.S1G218800.t1"; gene_id "Ledus.S1G218800"
Ledus.S1	AUGUSTUS	exon	19663731	19664597	.	-	.	transcript_id "Ledus.S1G218800.t1"; gene_id "Ledus.S1G218800"
Ledus.S1	AUGUSTUS	intron	19664598	19664676	.	-	.	transcript_id "Ledus.S1G218800.t1"; gene_id "Ledus.S1G218800"
Ledus.S1	AUGUSTUS	CDS	19664677	19664919	0.86	-	0	transcript_id "Ledus.S1G218800.t1"; gene_id "Ledus.S1G218800"
Ledus.S1	AUGUSTUS	exon	19664677	19664919	.	-	.	transcript_id "Ledus.S1G218800.t1"; gene_id "Ledus.S1G218800"
Ledus.S1	AUGUSTUS	start_codon	19664917	19664919	.	-	0	transcript_id "Ledus.S1G218800.t1"; gene_id "Ledus.S1G218800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6981.t1 is derived from g6512.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	522178	523729	.	-	.	Ledus.C7G004200
Ledus.C7	AUGUSTUS	transcript	522178	523729	.	-	.	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	stop_codon	522175	522177	.	-	0	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	CDS	522178	522303	1	-	0	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	exon	522178	522303	.	-	.	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	intron	522304	522398	.	-	.	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	CDS	522399	522467	1	-	0	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	exon	522399	522467	.	-	.	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	intron	522468	522629	.	-	.	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	CDS	522630	522773	1	-	0	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	exon	522630	522773	.	-	.	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	intron	522774	522855	.	-	.	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	CDS	522856	522973	1	-	1	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	exon	522856	522973	.	-	.	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	intron	522974	523175	.	-	.	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	CDS	523176	523392	1	-	2	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	exon	523176	523392	.	-	.	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	intron	523393	523479	.	-	.	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	CDS	523480	523729	0.51	-	0	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	exon	523480	523729	.	-	.	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
Ledus.C7	AUGUSTUS	start_codon	523727	523729	.	-	0	transcript_id "Ledus.C7G004200.t1"; gene_id "Ledus.C7G004200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3195.t1 is derived from g630.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6682955	6683483	.	-	.	Ledus.S1G061600
Ledus.S1	AUGUSTUS	transcript	6682955	6683483	.	-	.	transcript_id "Ledus.S1G061600.t1"; gene_id "Ledus.S1G061600"
Ledus.S1	AUGUSTUS	stop_codon	6682952	6682954	.	-	0	transcript_id "Ledus.S1G061600.t1"; gene_id "Ledus.S1G061600"
Ledus.S1	AUGUSTUS	CDS	6682955	6682989	1	-	2	transcript_id "Ledus.S1G061600.t1"; gene_id "Ledus.S1G061600"
Ledus.S1	AUGUSTUS	exon	6682955	6682989	.	-	.	transcript_id "Ledus.S1G061600.t1"; gene_id "Ledus.S1G061600"
Ledus.S1	AUGUSTUS	intron	6682990	6683107	.	-	.	transcript_id "Ledus.S1G061600.t1"; gene_id "Ledus.S1G061600"
Ledus.S1	AUGUSTUS	CDS	6683108	6683483	0.5	-	0	transcript_id "Ledus.S1G061600.t1"; gene_id "Ledus.S1G061600"
Ledus.S1	AUGUSTUS	exon	6683108	6683483	.	-	.	transcript_id "Ledus.S1G061600.t1"; gene_id "Ledus.S1G061600"
Ledus.S1	AUGUSTUS	start_codon	6683481	6683483	.	-	0	transcript_id "Ledus.S1G061600.t1"; gene_id "Ledus.S1G061600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3305.t1 is derived from g740.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7400571	7404246	.	+	.	Ledus.S1G072600
Ledus.S1	AUGUSTUS	transcript	7400571	7404246	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	start_codon	7400571	7400573	.	+	0	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7400571	7400657	0.94	+	0	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7400571	7400657	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	intron	7400658	7400787	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7400788	7400917	0.89	+	0	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7400788	7400917	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	intron	7400918	7401036	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7401037	7401125	0.62	+	2	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7401037	7401125	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	intron	7401126	7401285	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7401286	7401399	1	+	0	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7401286	7401399	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	intron	7401400	7401552	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7401553	7401653	1	+	0	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7401553	7401653	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	intron	7401654	7401781	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7401782	7401845	1	+	1	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7401782	7401845	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	intron	7401846	7402023	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7402024	7402193	1	+	0	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7402024	7402193	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	intron	7402194	7402299	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7402300	7402376	0.94	+	1	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7402300	7402376	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	intron	7402377	7402621	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7402622	7402781	1	+	2	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7402622	7402781	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	intron	7402782	7402890	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7402891	7402952	0.85	+	1	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7402891	7402952	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	intron	7402953	7403054	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7403055	7403190	1	+	2	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7403055	7403190	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	intron	7403191	7403335	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7403336	7403392	1	+	1	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7403336	7403392	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	intron	7403393	7404179	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	CDS	7404180	7404246	1	+	1	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	exon	7404180	7404246	.	+	.	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
Ledus.S1	AUGUSTUS	stop_codon	7404617	7404619	.	+	0	transcript_id "Ledus.S1G072600.t1"; gene_id "Ledus.S1G072600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12408.t1 is derived from g6029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11795126	11796113	.	+	.	Ledus.S4G156400
Ledus.S4	AUGUSTUS	transcript	11795715	11796113	.	+	.	transcript_id "Ledus.S4G156400.t1"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	start_codon	11795715	11795717	.	+	0	transcript_id "Ledus.S4G156400.t1"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	CDS	11795715	11795804	0.97	+	0	transcript_id "Ledus.S4G156400.t1"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	exon	11795715	11795804	.	+	.	transcript_id "Ledus.S4G156400.t1"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	intron	11795805	11795891	.	+	.	transcript_id "Ledus.S4G156400.t1"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	CDS	11795892	11796113	0.96	+	0	transcript_id "Ledus.S4G156400.t1"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	exon	11795892	11796113	.	+	.	transcript_id "Ledus.S4G156400.t1"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	stop_codon	11796114	11796116	.	+	0	transcript_id "Ledus.S4G156400.t1"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	transcript	11795126	11796113	.	+	.	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	start_codon	11795126	11795128	.	+	0	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	CDS	11795126	11795317	0.72	+	0	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	exon	11795126	11795317	.	+	.	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	intron	11795318	11795461	.	+	.	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	CDS	11795462	11795483	0.95	+	0	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	exon	11795462	11795483	.	+	.	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	intron	11795484	11795621	.	+	.	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	CDS	11795622	11795804	1	+	2	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	exon	11795622	11795804	.	+	.	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	intron	11795805	11795883	.	+	.	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	CDS	11795884	11796113	0.98	+	2	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	exon	11795884	11796113	.	+	.	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
Ledus.S4	AUGUSTUS	stop_codon	11796114	11796116	.	+	0	transcript_id "Ledus.S4G156400.t2"; gene_id "Ledus.S4G156400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12124.t1 is derived from g5743.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9647431	9648668	.	-	.	Ledus.S4G128000
Ledus.S4	AUGUSTUS	transcript	9647431	9648668	.	-	.	transcript_id "Ledus.S4G128000.t1"; gene_id "Ledus.S4G128000"
Ledus.S4	AUGUSTUS	stop_codon	9647428	9647430	.	-	0	transcript_id "Ledus.S4G128000.t1"; gene_id "Ledus.S4G128000"
Ledus.S4	AUGUSTUS	CDS	9647431	9648083	0.57	-	2	transcript_id "Ledus.S4G128000.t1"; gene_id "Ledus.S4G128000"
Ledus.S4	AUGUSTUS	exon	9647431	9648083	.	-	.	transcript_id "Ledus.S4G128000.t1"; gene_id "Ledus.S4G128000"
Ledus.S4	AUGUSTUS	intron	9648084	9648508	.	-	.	transcript_id "Ledus.S4G128000.t1"; gene_id "Ledus.S4G128000"
Ledus.S4	AUGUSTUS	CDS	9648509	9648668	0.95	-	0	transcript_id "Ledus.S4G128000.t1"; gene_id "Ledus.S4G128000"
Ledus.S4	AUGUSTUS	exon	9648509	9648668	.	-	.	transcript_id "Ledus.S4G128000.t1"; gene_id "Ledus.S4G128000"
Ledus.S4	AUGUSTUS	start_codon	9648666	9648668	.	-	0	transcript_id "Ledus.S4G128000.t1"; gene_id "Ledus.S4G128000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4955.t1 is derived from g2393.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20870699	20872471	.	-	.	Ledus.S1G237600
Ledus.S1	AUGUSTUS	transcript	20870699	20872471	.	-	.	transcript_id "Ledus.S1G237600.t1"; gene_id "Ledus.S1G237600"
Ledus.S1	AUGUSTUS	stop_codon	20870696	20870698	.	-	0	transcript_id "Ledus.S1G237600.t1"; gene_id "Ledus.S1G237600"
Ledus.S1	AUGUSTUS	CDS	20870699	20871177	0.84	-	2	transcript_id "Ledus.S1G237600.t1"; gene_id "Ledus.S1G237600"
Ledus.S1	AUGUSTUS	exon	20870699	20871177	.	-	.	transcript_id "Ledus.S1G237600.t1"; gene_id "Ledus.S1G237600"
Ledus.S1	AUGUSTUS	intron	20871178	20871336	.	-	.	transcript_id "Ledus.S1G237600.t1"; gene_id "Ledus.S1G237600"
Ledus.S1	AUGUSTUS	CDS	20871337	20871668	1	-	1	transcript_id "Ledus.S1G237600.t1"; gene_id "Ledus.S1G237600"
Ledus.S1	AUGUSTUS	exon	20871337	20871668	.	-	.	transcript_id "Ledus.S1G237600.t1"; gene_id "Ledus.S1G237600"
Ledus.S1	AUGUSTUS	intron	20871669	20871755	.	-	.	transcript_id "Ledus.S1G237600.t1"; gene_id "Ledus.S1G237600"
Ledus.S1	AUGUSTUS	CDS	20871756	20872471	0.41	-	0	transcript_id "Ledus.S1G237600.t1"; gene_id "Ledus.S1G237600"
Ledus.S1	AUGUSTUS	exon	20871756	20872471	.	-	.	transcript_id "Ledus.S1G237600.t1"; gene_id "Ledus.S1G237600"
Ledus.S1	AUGUSTUS	start_codon	20872469	20872471	.	-	0	transcript_id "Ledus.S1G237600.t1"; gene_id "Ledus.S1G237600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13146.t1 is derived from g6956.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	7351497	7351700	.	-	.	Ledus.S6G020800
Ledus.S6	AUGUSTUS	transcript	7351497	7351700	.	-	.	transcript_id "Ledus.S6G020800.t1"; gene_id "Ledus.S6G020800"
Ledus.S6	AUGUSTUS	stop_codon	7351494	7351496	.	-	0	transcript_id "Ledus.S6G020800.t1"; gene_id "Ledus.S6G020800"
Ledus.S6	AUGUSTUS	CDS	7351497	7351700	0.5	-	0	transcript_id "Ledus.S6G020800.t1"; gene_id "Ledus.S6G020800"
Ledus.S6	AUGUSTUS	exon	7351497	7351700	.	-	.	transcript_id "Ledus.S6G020800.t1"; gene_id "Ledus.S6G020800"
Ledus.S6	AUGUSTUS	start_codon	7351698	7351700	.	-	0	transcript_id "Ledus.S6G020800.t1"; gene_id "Ledus.S6G020800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8398.t1 is derived from g13070.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11479815	11481104	.	-	.	Ledus.S5G117600
Ledus.S5	AUGUSTUS	transcript	11479815	11481104	.	-	.	transcript_id "Ledus.S5G117600.t1"; gene_id "Ledus.S5G117600"
Ledus.S5	AUGUSTUS	stop_codon	11479812	11479814	.	-	0	transcript_id "Ledus.S5G117600.t1"; gene_id "Ledus.S5G117600"
Ledus.S5	AUGUSTUS	CDS	11479815	11481104	0.8	-	0	transcript_id "Ledus.S5G117600.t1"; gene_id "Ledus.S5G117600"
Ledus.S5	AUGUSTUS	exon	11479815	11481104	.	-	.	transcript_id "Ledus.S5G117600.t1"; gene_id "Ledus.S5G117600"
Ledus.S5	AUGUSTUS	start_codon	11481102	11481104	.	-	0	transcript_id "Ledus.S5G117600.t1"; gene_id "Ledus.S5G117600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4245.t1 is derived from g1681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15739523	15740146	.	-	.	Ledus.S1G166600
Ledus.S1	AUGUSTUS	transcript	15739523	15740146	.	-	.	transcript_id "Ledus.S1G166600.t1"; gene_id "Ledus.S1G166600"
Ledus.S1	AUGUSTUS	stop_codon	15739520	15739522	.	-	0	transcript_id "Ledus.S1G166600.t1"; gene_id "Ledus.S1G166600"
Ledus.S1	AUGUSTUS	CDS	15739523	15740146	0.92	-	0	transcript_id "Ledus.S1G166600.t1"; gene_id "Ledus.S1G166600"
Ledus.S1	AUGUSTUS	exon	15739523	15740146	.	-	.	transcript_id "Ledus.S1G166600.t1"; gene_id "Ledus.S1G166600"
Ledus.S1	AUGUSTUS	start_codon	15740144	15740146	.	-	0	transcript_id "Ledus.S1G166600.t1"; gene_id "Ledus.S1G166600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6434.t1 is derived from g3877.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31230488	31231435	.	-	.	Ledus.S1G385500
Ledus.S1	AUGUSTUS	transcript	31230488	31231435	.	-	.	transcript_id "Ledus.S1G385500.t1"; gene_id "Ledus.S1G385500"
Ledus.S1	AUGUSTUS	stop_codon	31230485	31230487	.	-	0	transcript_id "Ledus.S1G385500.t1"; gene_id "Ledus.S1G385500"
Ledus.S1	AUGUSTUS	CDS	31230488	31231435	1	-	0	transcript_id "Ledus.S1G385500.t1"; gene_id "Ledus.S1G385500"
Ledus.S1	AUGUSTUS	exon	31230488	31231435	.	-	.	transcript_id "Ledus.S1G385500.t1"; gene_id "Ledus.S1G385500"
Ledus.S1	AUGUSTUS	start_codon	31231433	31231435	.	-	0	transcript_id "Ledus.S1G385500.t1"; gene_id "Ledus.S1G385500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1143.t1 is derived from g8004.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7909965	7911907	.	-	.	Ledus.S2G102500
Ledus.S2	AUGUSTUS	transcript	7909965	7911907	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	stop_codon	7909962	7909964	.	-	0	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	CDS	7909965	7910124	1	-	1	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	exon	7909965	7910124	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	intron	7910125	7910243	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	CDS	7910244	7910340	0.98	-	2	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	exon	7910244	7910340	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	intron	7910341	7910424	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	CDS	7910425	7910476	1	-	0	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	exon	7910425	7910476	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	intron	7910477	7910640	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	CDS	7910641	7910685	1	-	0	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	exon	7910641	7910685	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	intron	7910686	7910771	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	CDS	7910772	7910816	1	-	0	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	exon	7910772	7910816	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	intron	7910817	7910925	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	CDS	7910926	7911003	1	-	0	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	exon	7910926	7911003	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	intron	7911004	7911098	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	CDS	7911099	7911229	1	-	2	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	exon	7911099	7911229	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	intron	7911230	7911312	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	CDS	7911313	7911489	1	-	2	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	exon	7911313	7911489	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	intron	7911490	7911571	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	CDS	7911572	7911732	1	-	1	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	exon	7911572	7911732	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	intron	7911733	7911869	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	CDS	7911870	7911907	1	-	0	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	exon	7911870	7911907	.	-	.	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
Ledus.S2	AUGUSTUS	start_codon	7911905	7911907	.	-	0	transcript_id "Ledus.S2G102500.t1"; gene_id "Ledus.S2G102500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg189.t1 is derived from g7050.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	663831	665291	.	+	.	Ledus.S2G007100
Ledus.S2	AUGUSTUS	transcript	663831	665291	.	+	.	transcript_id "Ledus.S2G007100.t1"; gene_id "Ledus.S2G007100"
Ledus.S2	AUGUSTUS	start_codon	663831	663833	.	+	0	transcript_id "Ledus.S2G007100.t1"; gene_id "Ledus.S2G007100"
Ledus.S2	AUGUSTUS	CDS	663831	665291	0.9	+	0	transcript_id "Ledus.S2G007100.t1"; gene_id "Ledus.S2G007100"
Ledus.S2	AUGUSTUS	exon	663831	665291	.	+	.	transcript_id "Ledus.S2G007100.t1"; gene_id "Ledus.S2G007100"
Ledus.S2	AUGUSTUS	stop_codon	665292	665294	.	+	0	transcript_id "Ledus.S2G007100.t1"; gene_id "Ledus.S2G007100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6348.t1 is derived from g3791.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30690423	30691756	.	+	.	Ledus.S1G376900
Ledus.S1	AUGUSTUS	transcript	30690423	30691756	.	+	.	transcript_id "Ledus.S1G376900.t1"; gene_id "Ledus.S1G376900"
Ledus.S1	AUGUSTUS	start_codon	30690423	30690425	.	+	0	transcript_id "Ledus.S1G376900.t1"; gene_id "Ledus.S1G376900"
Ledus.S1	AUGUSTUS	CDS	30690423	30690585	0.43	+	0	transcript_id "Ledus.S1G376900.t1"; gene_id "Ledus.S1G376900"
Ledus.S1	AUGUSTUS	exon	30690423	30690585	.	+	.	transcript_id "Ledus.S1G376900.t1"; gene_id "Ledus.S1G376900"
Ledus.S1	AUGUSTUS	intron	30690586	30690716	.	+	.	transcript_id "Ledus.S1G376900.t1"; gene_id "Ledus.S1G376900"
Ledus.S1	AUGUSTUS	CDS	30690717	30691756	0.89	+	2	transcript_id "Ledus.S1G376900.t1"; gene_id "Ledus.S1G376900"
Ledus.S1	AUGUSTUS	exon	30690717	30691756	.	+	.	transcript_id "Ledus.S1G376900.t1"; gene_id "Ledus.S1G376900"
Ledus.S1	AUGUSTUS	stop_codon	30691757	30691759	.	+	0	transcript_id "Ledus.S1G376900.t1"; gene_id "Ledus.S1G376900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5533.t1 is derived from g2972.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24972937	24979941	.	-	.	Ledus.S1G295400
Ledus.S1	AUGUSTUS	transcript	24972937	24979941	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	stop_codon	24972934	24972936	.	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24972937	24973167	1	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24972937	24973167	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24973168	24973262	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24973263	24973526	1	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24973263	24973526	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24973527	24973614	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24973615	24973680	1	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24973615	24973680	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24973681	24973754	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24973755	24973847	1	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24973755	24973847	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24973848	24973929	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24973930	24974133	1	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24973930	24974133	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24974134	24974217	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24974218	24974295	1	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24974218	24974295	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24974296	24974375	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24974376	24974591	1	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24974376	24974591	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24974592	24974690	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24974691	24974784	1	-	1	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24974691	24974784	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24974785	24974871	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24974872	24975123	1	-	1	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24974872	24975123	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24975124	24975223	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24975224	24975495	0.98	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24975224	24975495	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24975496	24975643	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24975644	24975985	0.76	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24975644	24975985	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24975986	24976078	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24976079	24976381	0.54	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24976079	24976381	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24976382	24976462	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24976463	24976499	0.48	-	1	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24976463	24976499	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24976500	24976576	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24976577	24976914	0.71	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24976577	24976914	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24976915	24977055	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24977056	24977130	1	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24977056	24977130	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24977131	24977200	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24977201	24977350	1	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24977201	24977350	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24977351	24977458	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24977459	24977533	0.92	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24977459	24977533	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24977534	24977693	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24977694	24978169	0.73	-	2	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24977694	24978169	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24978170	24978274	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24978275	24978470	0.74	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24978275	24978470	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24978471	24978567	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24978568	24978717	1	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24978568	24978717	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24978718	24978795	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24978796	24979111	1	-	1	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24978796	24979111	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	intron	24979112	24979189	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	CDS	24979190	24979941	0.43	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	exon	24979190	24979941	.	-	.	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
Ledus.S1	AUGUSTUS	start_codon	24979939	24979941	.	-	0	transcript_id "Ledus.S1G295400.t1"; gene_id "Ledus.S1G295400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3265.t1 is derived from g700.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7183691	7184200	.	+	.	Ledus.S1G068600
Ledus.S1	AUGUSTUS	transcript	7183691	7184200	.	+	.	transcript_id "Ledus.S1G068600.t1"; gene_id "Ledus.S1G068600"
Ledus.S1	AUGUSTUS	start_codon	7183691	7183693	.	+	0	transcript_id "Ledus.S1G068600.t1"; gene_id "Ledus.S1G068600"
Ledus.S1	AUGUSTUS	CDS	7183691	7183985	1	+	0	transcript_id "Ledus.S1G068600.t1"; gene_id "Ledus.S1G068600"
Ledus.S1	AUGUSTUS	exon	7183691	7183985	.	+	.	transcript_id "Ledus.S1G068600.t1"; gene_id "Ledus.S1G068600"
Ledus.S1	AUGUSTUS	intron	7183986	7184078	.	+	.	transcript_id "Ledus.S1G068600.t1"; gene_id "Ledus.S1G068600"
Ledus.S1	AUGUSTUS	CDS	7184079	7184200	1	+	2	transcript_id "Ledus.S1G068600.t1"; gene_id "Ledus.S1G068600"
Ledus.S1	AUGUSTUS	exon	7184079	7184200	.	+	.	transcript_id "Ledus.S1G068600.t1"; gene_id "Ledus.S1G068600"
Ledus.S1	AUGUSTUS	stop_codon	7184201	7184203	.	+	0	transcript_id "Ledus.S1G068600.t1"; gene_id "Ledus.S1G068600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10469.t1 is derived from g11499.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15459794	15461110	.	+	.	Ledus.S3G194600
Ledus.S3	AUGUSTUS	transcript	15459794	15461110	.	+	.	transcript_id "Ledus.S3G194600.t1"; gene_id "Ledus.S3G194600"
Ledus.S3	AUGUSTUS	start_codon	15459794	15459796	.	+	0	transcript_id "Ledus.S3G194600.t1"; gene_id "Ledus.S3G194600"
Ledus.S3	AUGUSTUS	CDS	15459794	15461110	1	+	0	transcript_id "Ledus.S3G194600.t1"; gene_id "Ledus.S3G194600"
Ledus.S3	AUGUSTUS	exon	15459794	15461110	.	+	.	transcript_id "Ledus.S3G194600.t1"; gene_id "Ledus.S3G194600"
Ledus.S3	AUGUSTUS	stop_codon	15461111	15461113	.	+	0	transcript_id "Ledus.S3G194600.t1"; gene_id "Ledus.S3G194600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1566.t1 is derived from g8427.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10972565	10973074	.	-	.	Ledus.S2G144800
Ledus.S2	AUGUSTUS	transcript	10972565	10973074	.	-	.	transcript_id "Ledus.S2G144800.t1"; gene_id "Ledus.S2G144800"
Ledus.S2	AUGUSTUS	stop_codon	10972562	10972564	.	-	0	transcript_id "Ledus.S2G144800.t1"; gene_id "Ledus.S2G144800"
Ledus.S2	AUGUSTUS	CDS	10972565	10973074	0.64	-	0	transcript_id "Ledus.S2G144800.t1"; gene_id "Ledus.S2G144800"
Ledus.S2	AUGUSTUS	exon	10972565	10973074	.	-	.	transcript_id "Ledus.S2G144800.t1"; gene_id "Ledus.S2G144800"
Ledus.S2	AUGUSTUS	start_codon	10973072	10973074	.	-	0	transcript_id "Ledus.S2G144800.t1"; gene_id "Ledus.S2G144800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1152.t1 is derived from g8013.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7965621	7966357	.	-	.	Ledus.S2G103400
Ledus.S2	AUGUSTUS	transcript	7965621	7966357	.	-	.	transcript_id "Ledus.S2G103400.t1"; gene_id "Ledus.S2G103400"
Ledus.S2	AUGUSTUS	stop_codon	7965618	7965620	.	-	0	transcript_id "Ledus.S2G103400.t1"; gene_id "Ledus.S2G103400"
Ledus.S2	AUGUSTUS	CDS	7965621	7966080	0.99	-	1	transcript_id "Ledus.S2G103400.t1"; gene_id "Ledus.S2G103400"
Ledus.S2	AUGUSTUS	exon	7965621	7966080	.	-	.	transcript_id "Ledus.S2G103400.t1"; gene_id "Ledus.S2G103400"
Ledus.S2	AUGUSTUS	intron	7966081	7966222	.	-	.	transcript_id "Ledus.S2G103400.t1"; gene_id "Ledus.S2G103400"
Ledus.S2	AUGUSTUS	CDS	7966223	7966262	1	-	2	transcript_id "Ledus.S2G103400.t1"; gene_id "Ledus.S2G103400"
Ledus.S2	AUGUSTUS	exon	7966223	7966262	.	-	.	transcript_id "Ledus.S2G103400.t1"; gene_id "Ledus.S2G103400"
Ledus.S2	AUGUSTUS	intron	7966263	7966350	.	-	.	transcript_id "Ledus.S2G103400.t1"; gene_id "Ledus.S2G103400"
Ledus.S2	AUGUSTUS	CDS	7966351	7966357	0.52	-	0	transcript_id "Ledus.S2G103400.t1"; gene_id "Ledus.S2G103400"
Ledus.S2	AUGUSTUS	exon	7966351	7966357	.	-	.	transcript_id "Ledus.S2G103400.t1"; gene_id "Ledus.S2G103400"
Ledus.S2	AUGUSTUS	start_codon	7966355	7966357	.	-	0	transcript_id "Ledus.S2G103400.t1"; gene_id "Ledus.S2G103400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8652.t1 is derived from g9682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1105763	1107060	.	+	.	Ledus.S3G012900
Ledus.S3	AUGUSTUS	transcript	1105763	1107060	.	+	.	transcript_id "Ledus.S3G012900.t1"; gene_id "Ledus.S3G012900"
Ledus.S3	AUGUSTUS	start_codon	1105763	1105765	.	+	0	transcript_id "Ledus.S3G012900.t1"; gene_id "Ledus.S3G012900"
Ledus.S3	AUGUSTUS	CDS	1105763	1105857	0.28	+	0	transcript_id "Ledus.S3G012900.t1"; gene_id "Ledus.S3G012900"
Ledus.S3	AUGUSTUS	exon	1105763	1105857	.	+	.	transcript_id "Ledus.S3G012900.t1"; gene_id "Ledus.S3G012900"
Ledus.S3	AUGUSTUS	intron	1105858	1106106	.	+	.	transcript_id "Ledus.S3G012900.t1"; gene_id "Ledus.S3G012900"
Ledus.S3	AUGUSTUS	CDS	1106107	1106405	0.23	+	1	transcript_id "Ledus.S3G012900.t1"; gene_id "Ledus.S3G012900"
Ledus.S3	AUGUSTUS	exon	1106107	1106405	.	+	.	transcript_id "Ledus.S3G012900.t1"; gene_id "Ledus.S3G012900"
Ledus.S3	AUGUSTUS	intron	1106406	1106491	.	+	.	transcript_id "Ledus.S3G012900.t1"; gene_id "Ledus.S3G012900"
Ledus.S3	AUGUSTUS	CDS	1106492	1107060	0.45	+	2	transcript_id "Ledus.S3G012900.t1"; gene_id "Ledus.S3G012900"
Ledus.S3	AUGUSTUS	exon	1106492	1107060	.	+	.	transcript_id "Ledus.S3G012900.t1"; gene_id "Ledus.S3G012900"
Ledus.S3	AUGUSTUS	stop_codon	1107061	1107063	.	+	0	transcript_id "Ledus.S3G012900.t1"; gene_id "Ledus.S3G012900"
# This transcript jg8561.t2 is derived from g9591.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8562.t1 is derived from g9592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	191311	193353	.	-	.	Ledus.S3G003900
Ledus.S3	AUGUSTUS	transcript	191311	193290	.	-	.	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	stop_codon	191308	191310	.	-	0	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	CDS	191311	191437	0.96	-	1	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	exon	191311	191437	.	-	.	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	intron	191438	191529	.	-	.	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	CDS	191530	192401	0.51	-	0	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	exon	191530	192401	.	-	.	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	intron	192402	192485	.	-	.	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	CDS	192486	192557	0.98	-	0	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	exon	192486	192557	.	-	.	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	intron	192558	192629	.	-	.	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	CDS	192630	192952	0.71	-	2	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	exon	192630	192952	.	-	.	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	intron	192953	193043	.	-	.	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	CDS	193044	193290	0.93	-	0	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	exon	193044	193290	.	-	.	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	start_codon	193288	193290	.	-	0	transcript_id "Ledus.S3G003900.t1"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	transcript	191311	193353	.	-	.	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	stop_codon	191308	191310	.	-	0	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	CDS	191311	191437	0.92	-	1	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	exon	191311	191437	.	-	.	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	intron	191438	191529	.	-	.	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	CDS	191530	192401	0.56	-	0	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	exon	191530	192401	.	-	.	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	intron	192402	192485	.	-	.	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	CDS	192486	192557	0.95	-	0	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	exon	192486	192557	.	-	.	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	intron	192558	192629	.	-	.	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	CDS	192630	192952	0.68	-	2	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	exon	192630	192952	.	-	.	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	intron	192953	193043	.	-	.	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	CDS	193044	193353	0.72	-	0	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	exon	193044	193353	.	-	.	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
Ledus.S3	AUGUSTUS	start_codon	193351	193353	.	-	0	transcript_id "Ledus.S3G003900.t2"; gene_id "Ledus.S3G003900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4205.t1 is derived from g1641.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15366928	15368289	.	-	.	Ledus.S1G162600
Ledus.S1	AUGUSTUS	transcript	15366928	15368289	.	-	.	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	stop_codon	15366925	15366927	.	-	0	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	CDS	15366928	15367203	1	-	0	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	exon	15366928	15367203	.	-	.	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	intron	15367204	15367300	.	-	.	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	CDS	15367301	15367538	1	-	1	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	exon	15367301	15367538	.	-	.	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	intron	15367539	15367716	.	-	.	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	CDS	15367717	15367881	1	-	1	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	exon	15367717	15367881	.	-	.	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	intron	15367882	15367993	.	-	.	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	CDS	15367994	15368289	1	-	0	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	exon	15367994	15368289	.	-	.	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
Ledus.S1	AUGUSTUS	start_codon	15368287	15368289	.	-	0	transcript_id "Ledus.S1G162600.t1"; gene_id "Ledus.S1G162600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1053.t1 is derived from g7914.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7022328	7023920	.	-	.	Ledus.S2G093500
Ledus.S2	AUGUSTUS	transcript	7022328	7023920	.	-	.	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	stop_codon	7022325	7022327	.	-	0	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	CDS	7022328	7022969	1	-	0	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	exon	7022328	7022969	.	-	.	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	intron	7022970	7023047	.	-	.	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	CDS	7023048	7023507	0.38	-	1	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	exon	7023048	7023507	.	-	.	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	intron	7023508	7023636	.	-	.	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	CDS	7023637	7023812	0.42	-	0	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	exon	7023637	7023812	.	-	.	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	intron	7023813	7023908	.	-	.	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	CDS	7023909	7023920	0.92	-	0	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	exon	7023909	7023920	.	-	.	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
Ledus.S2	AUGUSTUS	start_codon	7023918	7023920	.	-	0	transcript_id "Ledus.S2G093500.t1"; gene_id "Ledus.S2G093500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7510.t1 is derived from g12181.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3518458	3518928	.	-	.	Ledus.S5G028800
Ledus.S5	AUGUSTUS	transcript	3518458	3518928	.	-	.	transcript_id "Ledus.S5G028800.t1"; gene_id "Ledus.S5G028800"
Ledus.S5	AUGUSTUS	stop_codon	3518455	3518457	.	-	0	transcript_id "Ledus.S5G028800.t1"; gene_id "Ledus.S5G028800"
Ledus.S5	AUGUSTUS	CDS	3518458	3518928	0.79	-	0	transcript_id "Ledus.S5G028800.t1"; gene_id "Ledus.S5G028800"
Ledus.S5	AUGUSTUS	exon	3518458	3518928	.	-	.	transcript_id "Ledus.S5G028800.t1"; gene_id "Ledus.S5G028800"
Ledus.S5	AUGUSTUS	start_codon	3518926	3518928	.	-	0	transcript_id "Ledus.S5G028800.t1"; gene_id "Ledus.S5G028800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12031.t1 is derived from g5650.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9011143	9011623	.	-	.	Ledus.S4G118700
Ledus.S4	AUGUSTUS	transcript	9011143	9011623	.	-	.	transcript_id "Ledus.S4G118700.t1"; gene_id "Ledus.S4G118700"
Ledus.S4	AUGUSTUS	stop_codon	9011140	9011142	.	-	0	transcript_id "Ledus.S4G118700.t1"; gene_id "Ledus.S4G118700"
Ledus.S4	AUGUSTUS	CDS	9011143	9011274	0.92	-	0	transcript_id "Ledus.S4G118700.t1"; gene_id "Ledus.S4G118700"
Ledus.S4	AUGUSTUS	exon	9011143	9011274	.	-	.	transcript_id "Ledus.S4G118700.t1"; gene_id "Ledus.S4G118700"
Ledus.S4	AUGUSTUS	intron	9011275	9011557	.	-	.	transcript_id "Ledus.S4G118700.t1"; gene_id "Ledus.S4G118700"
Ledus.S4	AUGUSTUS	CDS	9011558	9011623	0.89	-	0	transcript_id "Ledus.S4G118700.t1"; gene_id "Ledus.S4G118700"
Ledus.S4	AUGUSTUS	exon	9011558	9011623	.	-	.	transcript_id "Ledus.S4G118700.t1"; gene_id "Ledus.S4G118700"
Ledus.S4	AUGUSTUS	start_codon	9011621	9011623	.	-	0	transcript_id "Ledus.S4G118700.t1"; gene_id "Ledus.S4G118700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11519.t1 is derived from g5137.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5022749	5023786	.	-	.	Ledus.S4G067500
Ledus.S4	AUGUSTUS	transcript	5022749	5023786	.	-	.	transcript_id "Ledus.S4G067500.t1"; gene_id "Ledus.S4G067500"
Ledus.S4	AUGUSTUS	stop_codon	5022746	5022748	.	-	0	transcript_id "Ledus.S4G067500.t1"; gene_id "Ledus.S4G067500"
Ledus.S4	AUGUSTUS	CDS	5022749	5022990	0.99	-	2	transcript_id "Ledus.S4G067500.t1"; gene_id "Ledus.S4G067500"
Ledus.S4	AUGUSTUS	exon	5022749	5022990	.	-	.	transcript_id "Ledus.S4G067500.t1"; gene_id "Ledus.S4G067500"
Ledus.S4	AUGUSTUS	intron	5022991	5023068	.	-	.	transcript_id "Ledus.S4G067500.t1"; gene_id "Ledus.S4G067500"
Ledus.S4	AUGUSTUS	CDS	5023069	5023261	1	-	0	transcript_id "Ledus.S4G067500.t1"; gene_id "Ledus.S4G067500"
Ledus.S4	AUGUSTUS	exon	5023069	5023261	.	-	.	transcript_id "Ledus.S4G067500.t1"; gene_id "Ledus.S4G067500"
Ledus.S4	AUGUSTUS	intron	5023262	5023369	.	-	.	transcript_id "Ledus.S4G067500.t1"; gene_id "Ledus.S4G067500"
Ledus.S4	AUGUSTUS	CDS	5023370	5023786	0.92	-	0	transcript_id "Ledus.S4G067500.t1"; gene_id "Ledus.S4G067500"
Ledus.S4	AUGUSTUS	exon	5023370	5023786	.	-	.	transcript_id "Ledus.S4G067500.t1"; gene_id "Ledus.S4G067500"
Ledus.S4	AUGUSTUS	start_codon	5023784	5023786	.	-	0	transcript_id "Ledus.S4G067500.t1"; gene_id "Ledus.S4G067500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1328.t1 is derived from g8189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9291252	9292951	.	-	.	Ledus.S2G121000
Ledus.S2	AUGUSTUS	transcript	9291252	9292951	.	-	.	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	stop_codon	9291249	9291251	.	-	0	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	CDS	9291252	9291383	0.97	-	0	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	exon	9291252	9291383	.	-	.	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	intron	9291384	9291551	.	-	.	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	CDS	9291552	9291609	1	-	1	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	exon	9291552	9291609	.	-	.	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	intron	9291610	9291680	.	-	.	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	CDS	9291681	9291916	1	-	0	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	exon	9291681	9291916	.	-	.	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	intron	9291917	9291997	.	-	.	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	CDS	9291998	9292282	0.99	-	0	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	exon	9291998	9292282	.	-	.	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	intron	9292283	9292358	.	-	.	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	CDS	9292359	9292860	1	-	1	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	exon	9292359	9292860	.	-	.	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	intron	9292861	9292940	.	-	.	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	CDS	9292941	9292951	0.91	-	0	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	exon	9292941	9292951	.	-	.	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
Ledus.S2	AUGUSTUS	start_codon	9292949	9292951	.	-	0	transcript_id "Ledus.S2G121000.t1"; gene_id "Ledus.S2G121000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8496.t1 is derived from g13168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12214596	12215791	.	-	.	Ledus.S5G127400
Ledus.S5	AUGUSTUS	transcript	12214596	12215791	.	-	.	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	stop_codon	12214593	12214595	.	-	0	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	CDS	12214596	12214651	0.74	-	2	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	exon	12214596	12214651	.	-	.	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	intron	12214652	12214739	.	-	.	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	CDS	12214740	12214844	1	-	2	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	exon	12214740	12214844	.	-	.	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	intron	12214845	12214933	.	-	.	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	CDS	12214934	12215019	1	-	1	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	exon	12214934	12215019	.	-	.	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	intron	12215020	12215107	.	-	.	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	CDS	12215108	12215258	1	-	2	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	exon	12215108	12215258	.	-	.	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	intron	12215259	12215332	.	-	.	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	CDS	12215333	12215554	0.85	-	2	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	exon	12215333	12215554	.	-	.	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	intron	12215555	12215616	.	-	.	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	CDS	12215617	12215791	0.81	-	0	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	exon	12215617	12215791	.	-	.	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
Ledus.S5	AUGUSTUS	start_codon	12215789	12215791	.	-	0	transcript_id "Ledus.S5G127400.t1"; gene_id "Ledus.S5G127400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6844.t1 is derived from g4288.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34606214	34609331	.	+	.	Ledus.S1G426500
Ledus.S1	AUGUSTUS	transcript	34606214	34609331	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	start_codon	34606214	34606216	.	+	0	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	CDS	34606214	34606371	0.96	+	0	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	exon	34606214	34606371	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	intron	34606372	34606660	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	CDS	34606661	34606736	1	+	1	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	exon	34606661	34606736	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	intron	34606737	34606865	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	CDS	34606866	34606958	1	+	0	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	exon	34606866	34606958	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	intron	34606959	34607120	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	CDS	34607121	34607195	1	+	0	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	exon	34607121	34607195	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	intron	34607196	34607339	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	CDS	34607340	34607444	1	+	0	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	exon	34607340	34607444	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	intron	34607445	34607589	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	CDS	34607590	34607680	1	+	0	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	exon	34607590	34607680	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	intron	34607681	34607852	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	CDS	34607853	34608058	1	+	2	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	exon	34607853	34608058	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	intron	34608059	34608192	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	CDS	34608193	34608276	1	+	0	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	exon	34608193	34608276	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	intron	34608277	34608377	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	CDS	34608378	34608443	0.98	+	0	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	exon	34608378	34608443	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	intron	34608444	34608629	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	CDS	34608630	34608692	1	+	0	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	exon	34608630	34608692	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	intron	34608693	34608818	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	CDS	34608819	34609059	1	+	0	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	exon	34608819	34609059	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	intron	34609060	34609263	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	CDS	34609264	34609331	1	+	2	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	exon	34609264	34609331	.	+	.	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
Ledus.S1	AUGUSTUS	stop_codon	34609332	34609334	.	+	0	transcript_id "Ledus.S1G426500.t1"; gene_id "Ledus.S1G426500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5198.t1 is derived from g2637.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22429876	22432974	.	-	.	Ledus.S1G261900
Ledus.S1	AUGUSTUS	transcript	22429876	22432974	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	stop_codon	22429873	22429875	.	-	0	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	CDS	22429876	22430070	1	-	0	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	exon	22429876	22430070	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	intron	22430071	22430142	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	CDS	22430143	22430241	1	-	0	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	exon	22430143	22430241	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	intron	22430242	22430333	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	CDS	22430334	22430472	1	-	1	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	exon	22430334	22430472	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	intron	22430473	22430567	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	CDS	22430568	22430671	1	-	0	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	exon	22430568	22430671	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	intron	22430672	22430788	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	CDS	22430789	22430940	1	-	2	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	exon	22430789	22430940	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	intron	22430941	22431040	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	CDS	22431041	22431140	1	-	0	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	exon	22431041	22431140	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	intron	22431141	22431238	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	CDS	22431239	22431328	1	-	0	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	exon	22431239	22431328	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	intron	22431329	22431426	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	CDS	22431427	22431626	1	-	2	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	exon	22431427	22431626	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	intron	22431627	22431720	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	CDS	22431721	22431912	0.86	-	2	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	exon	22431721	22431912	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	intron	22431913	22432099	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	CDS	22432100	22432128	1	-	1	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	exon	22432100	22432128	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	intron	22432129	22432218	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	CDS	22432219	22432249	1	-	2	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	exon	22432219	22432249	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	intron	22432250	22432331	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	CDS	22432332	22432974	0.63	-	0	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	exon	22432332	22432974	.	-	.	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
Ledus.S1	AUGUSTUS	start_codon	22432972	22432974	.	-	0	transcript_id "Ledus.S1G261900.t1"; gene_id "Ledus.S1G261900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4430.t1 is derived from g1866.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17073015	17094335	.	-	.	Ledus.S1G185100
Ledus.S1	AUGUSTUS	transcript	17073015	17094335	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	stop_codon	17073012	17073014	.	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17073015	17073350	0.91	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17073015	17073350	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17073351	17073432	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17073433	17073813	0.47	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17073433	17073813	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17073814	17073917	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17073918	17074237	0.9	-	2	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17073918	17074237	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17074238	17074343	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17074344	17074518	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17074344	17074518	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17074519	17074652	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17074653	17074766	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17074653	17074766	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17074767	17074849	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17074850	17074887	0.67	-	2	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17074850	17074887	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17074888	17075000	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17075001	17075475	0.51	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17075001	17075475	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17075476	17075615	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17075616	17075672	0.93	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17075616	17075672	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17075673	17075767	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17075768	17075851	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17075768	17075851	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17075852	17075934	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17075935	17076051	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17075935	17076051	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17076052	17076227	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17076228	17076475	1	-	2	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17076228	17076475	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17076476	17076568	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17076569	17076713	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17076569	17076713	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17076714	17076856	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17076857	17077072	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17076857	17077072	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17077073	17077157	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17077158	17077361	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17077158	17077361	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17077362	17077494	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17077495	17077599	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17077495	17077599	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17077600	17077683	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17077684	17077872	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17077684	17077872	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17077873	17078097	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17078098	17078370	0.88	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17078098	17078370	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17078371	17078497	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17078498	17078705	0.96	-	1	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17078498	17078705	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17078706	17078834	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17078835	17078953	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17078835	17078953	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17078954	17079135	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17079136	17079279	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17079136	17079279	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17079280	17079403	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17079404	17079562	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17079404	17079562	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17079563	17079665	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17079666	17079789	0.99	-	1	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17079666	17079789	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17079790	17079968	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17079969	17080102	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17079969	17080102	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17080103	17080248	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17080249	17080353	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17080249	17080353	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17080354	17080547	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17080548	17080649	0.93	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17080548	17080649	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17080650	17080751	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17080752	17080898	0.93	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17080752	17080898	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17080899	17081169	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17081170	17081337	0.98	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17081170	17081337	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17081338	17081446	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17081447	17081692	0.96	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17081447	17081692	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17081693	17081842	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17081843	17082136	0.99	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17081843	17082136	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17082137	17082253	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17082254	17082431	0.97	-	1	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17082254	17082431	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17082432	17082649	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17082650	17082808	1	-	1	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17082650	17082808	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17082809	17082912	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17082913	17083134	0.91	-	1	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17082913	17083134	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17083135	17083219	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17083220	17083551	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17083220	17083551	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17083552	17083645	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17083646	17083788	0.94	-	2	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17083646	17083788	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17083789	17083890	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17083891	17083963	0.86	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17083891	17083963	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17083964	17084092	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17084093	17084401	0.47	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17084093	17084401	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17084402	17084524	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17084525	17084717	1	-	1	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17084525	17084717	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17084718	17084876	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17084877	17085121	0.99	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17084877	17085121	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17085122	17085215	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17085216	17085407	0.97	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17085216	17085407	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17085408	17085542	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17085543	17085642	0.97	-	1	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17085543	17085642	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17085643	17085744	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17085745	17086100	0.91	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17085745	17086100	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17086101	17086196	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17086197	17086391	0.99	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17086197	17086391	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17086392	17086480	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17086481	17086645	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17086481	17086645	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17086646	17086753	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17086754	17086954	0.94	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17086754	17086954	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17086955	17087073	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17087074	17087445	0.83	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17087074	17087445	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17087446	17087595	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17087596	17087784	0.94	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17087596	17087784	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17087785	17087994	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17087995	17088153	0.91	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17087995	17088153	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17088154	17088272	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17088273	17088386	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17088273	17088386	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17088387	17088502	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17088503	17088600	0.92	-	2	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17088503	17088600	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17088601	17088810	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17088811	17088958	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17088811	17088958	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17088959	17089110	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17089111	17089338	0.96	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17089111	17089338	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17089339	17089423	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17089424	17089499	1	-	1	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17089424	17089499	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17089500	17089586	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17089587	17089844	1	-	1	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17089587	17089844	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17089845	17089941	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17089942	17090054	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17089942	17090054	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17090055	17090156	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17090157	17090444	0.98	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17090157	17090444	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17090445	17090656	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17090657	17090837	0.77	-	1	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17090657	17090837	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17090838	17090957	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17090958	17091649	0.79	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17090958	17091649	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17091650	17091734	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17091735	17092135	1	-	2	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17091735	17092135	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17092136	17092420	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17092421	17092821	0.99	-	1	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17092421	17092821	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17092822	17093090	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17093091	17093221	1	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17093091	17093221	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17093222	17093376	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17093377	17093439	0.81	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17093377	17093439	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	intron	17093440	17093567	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	CDS	17093568	17094335	0.23	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	exon	17093568	17094335	.	-	.	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
Ledus.S1	AUGUSTUS	start_codon	17094333	17094335	.	-	0	transcript_id "Ledus.S1G185100.t1"; gene_id "Ledus.S1G185100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8909.t1 is derived from g9939.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2988134	2989525	.	-	.	Ledus.S3G038600
Ledus.S3	AUGUSTUS	transcript	2988134	2989525	.	-	.	transcript_id "Ledus.S3G038600.t1"; gene_id "Ledus.S3G038600"
Ledus.S3	AUGUSTUS	stop_codon	2988131	2988133	.	-	0	transcript_id "Ledus.S3G038600.t1"; gene_id "Ledus.S3G038600"
Ledus.S3	AUGUSTUS	CDS	2988134	2989525	0.83	-	0	transcript_id "Ledus.S3G038600.t1"; gene_id "Ledus.S3G038600"
Ledus.S3	AUGUSTUS	exon	2988134	2989525	.	-	.	transcript_id "Ledus.S3G038600.t1"; gene_id "Ledus.S3G038600"
Ledus.S3	AUGUSTUS	start_codon	2989523	2989525	.	-	0	transcript_id "Ledus.S3G038600.t1"; gene_id "Ledus.S3G038600"
# This transcript jg9480.t2 is derived from g10510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg9481.t1 is derived from g10511.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7297350	7299230	.	+	.	Ledus.S3G095800
Ledus.S3	AUGUSTUS	transcript	7298436	7299230	.	+	.	transcript_id "Ledus.S3G095800.t1"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	start_codon	7298436	7298438	.	+	0	transcript_id "Ledus.S3G095800.t1"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	CDS	7298436	7299230	1	+	0	transcript_id "Ledus.S3G095800.t1"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	exon	7298436	7299230	.	+	.	transcript_id "Ledus.S3G095800.t1"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	stop_codon	7299231	7299233	.	+	0	transcript_id "Ledus.S3G095800.t1"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	transcript	7298574	7299230	.	+	.	transcript_id "Ledus.S3G095800.t2"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	start_codon	7298574	7298576	.	+	0	transcript_id "Ledus.S3G095800.t2"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	CDS	7298574	7299230	1	+	0	transcript_id "Ledus.S3G095800.t2"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	exon	7298574	7299230	.	+	.	transcript_id "Ledus.S3G095800.t2"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	stop_codon	7299231	7299233	.	+	0	transcript_id "Ledus.S3G095800.t2"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	transcript	7297350	7299230	.	+	.	transcript_id "Ledus.S3G095800.t3"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	start_codon	7297350	7297352	.	+	0	transcript_id "Ledus.S3G095800.t3"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	CDS	7297350	7299230	0.88	+	0	transcript_id "Ledus.S3G095800.t3"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	exon	7297350	7299230	.	+	.	transcript_id "Ledus.S3G095800.t3"; gene_id "Ledus.S3G095800"
Ledus.S3	AUGUSTUS	stop_codon	7299231	7299233	.	+	0	transcript_id "Ledus.S3G095800.t3"; gene_id "Ledus.S3G095800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11472.t1 is derived from g5090.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4534908	4537222	.	-	.	Ledus.S4G062800
Ledus.S4	AUGUSTUS	transcript	4534908	4537222	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	stop_codon	4534905	4534907	.	-	0	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	CDS	4534908	4534960	1	-	2	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	exon	4534908	4534960	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	intron	4534961	4535087	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	CDS	4535088	4535139	1	-	0	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	exon	4535088	4535139	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	intron	4535140	4535261	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	CDS	4535262	4535369	1	-	0	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	exon	4535262	4535369	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	intron	4535370	4535504	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	CDS	4535505	4535648	1	-	0	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	exon	4535505	4535648	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	intron	4535649	4535840	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	CDS	4535841	4535933	0.99	-	0	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	exon	4535841	4535933	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	intron	4535934	4536051	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	CDS	4536052	4536108	0.81	-	0	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	exon	4536052	4536108	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	intron	4536109	4536376	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	CDS	4536377	4536551	0.83	-	1	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	exon	4536377	4536551	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	intron	4536552	4536642	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	CDS	4536643	4536702	0.83	-	1	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	exon	4536643	4536702	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	intron	4536703	4536929	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	CDS	4536930	4537222	0.77	-	0	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	exon	4536930	4537222	.	-	.	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
Ledus.S4	AUGUSTUS	start_codon	4537220	4537222	.	-	0	transcript_id "Ledus.S4G062800.t1"; gene_id "Ledus.S4G062800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg382.t1 is derived from g7243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2084384	2085322	.	+	.	Ledus.S2G026400
Ledus.S2	AUGUSTUS	transcript	2084384	2085322	.	+	.	transcript_id "Ledus.S2G026400.t1"; gene_id "Ledus.S2G026400"
Ledus.S2	AUGUSTUS	start_codon	2084384	2084386	.	+	0	transcript_id "Ledus.S2G026400.t1"; gene_id "Ledus.S2G026400"
Ledus.S2	AUGUSTUS	CDS	2084384	2084505	0.44	+	0	transcript_id "Ledus.S2G026400.t1"; gene_id "Ledus.S2G026400"
Ledus.S2	AUGUSTUS	exon	2084384	2084505	.	+	.	transcript_id "Ledus.S2G026400.t1"; gene_id "Ledus.S2G026400"
Ledus.S2	AUGUSTUS	intron	2084506	2084868	.	+	.	transcript_id "Ledus.S2G026400.t1"; gene_id "Ledus.S2G026400"
Ledus.S2	AUGUSTUS	CDS	2084869	2085322	0.66	+	1	transcript_id "Ledus.S2G026400.t1"; gene_id "Ledus.S2G026400"
Ledus.S2	AUGUSTUS	exon	2084869	2085322	.	+	.	transcript_id "Ledus.S2G026400.t1"; gene_id "Ledus.S2G026400"
Ledus.S2	AUGUSTUS	stop_codon	2085323	2085325	.	+	0	transcript_id "Ledus.S2G026400.t1"; gene_id "Ledus.S2G026400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11894.t1 is derived from g5513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7571913	7573693	.	+	.	Ledus.S4G105000
Ledus.S4	AUGUSTUS	transcript	7571913	7573693	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	start_codon	7571913	7571915	.	+	0	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	CDS	7571913	7572094	0.84	+	0	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	exon	7571913	7572094	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	intron	7572095	7572179	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	CDS	7572180	7572316	1	+	1	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	exon	7572180	7572316	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	intron	7572317	7572440	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	CDS	7572441	7572590	0.99	+	2	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	exon	7572441	7572590	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	intron	7572591	7572675	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	CDS	7572676	7572848	1	+	2	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	exon	7572676	7572848	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	intron	7572849	7572920	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	CDS	7572921	7573154	1	+	0	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	exon	7572921	7573154	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	intron	7573155	7573253	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	CDS	7573254	7573516	1	+	0	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	exon	7573254	7573516	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	intron	7573517	7573611	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	CDS	7573612	7573693	1	+	1	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	exon	7573612	7573693	.	+	.	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
Ledus.S4	AUGUSTUS	stop_codon	7573694	7573696	.	+	0	transcript_id "Ledus.S4G105000.t1"; gene_id "Ledus.S4G105000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2111.t1 is derived from g8974.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14786115	14787086	.	+	.	Ledus.S2G199300
Ledus.S2	AUGUSTUS	transcript	14786115	14787086	.	+	.	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	start_codon	14786115	14786117	.	+	0	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	CDS	14786115	14786542	0.74	+	0	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	exon	14786115	14786542	.	+	.	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	intron	14786543	14786668	.	+	.	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	CDS	14786669	14786727	1	+	1	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	exon	14786669	14786727	.	+	.	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	intron	14786728	14786809	.	+	.	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	CDS	14786810	14786927	1	+	2	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	exon	14786810	14786927	.	+	.	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	intron	14786928	14787010	.	+	.	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	CDS	14787011	14787086	0.94	+	1	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	exon	14787011	14787086	.	+	.	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
Ledus.S2	AUGUSTUS	stop_codon	14787087	14787089	.	+	0	transcript_id "Ledus.S2G199300.t1"; gene_id "Ledus.S2G199300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg307.t1 is derived from g7168.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1536289	1536546	.	+	.	Ledus.S2G018900
Ledus.S2	AUGUSTUS	transcript	1536289	1536546	.	+	.	transcript_id "Ledus.S2G018900.t1"; gene_id "Ledus.S2G018900"
Ledus.S2	AUGUSTUS	start_codon	1536289	1536291	.	+	0	transcript_id "Ledus.S2G018900.t1"; gene_id "Ledus.S2G018900"
Ledus.S2	AUGUSTUS	CDS	1536289	1536546	0.67	+	0	transcript_id "Ledus.S2G018900.t1"; gene_id "Ledus.S2G018900"
Ledus.S2	AUGUSTUS	exon	1536289	1536546	.	+	.	transcript_id "Ledus.S2G018900.t1"; gene_id "Ledus.S2G018900"
Ledus.S2	AUGUSTUS	stop_codon	1536547	1536549	.	+	0	transcript_id "Ledus.S2G018900.t1"; gene_id "Ledus.S2G018900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7416.t1 is derived from g12087.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2151118	2154916	.	-	.	Ledus.S5G019400
Ledus.S5	AUGUSTUS	transcript	2151118	2154916	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	stop_codon	2151115	2151117	.	-	0	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2151118	2151684	0.99	-	0	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2151118	2151684	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2151685	2151807	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2151808	2152026	1	-	0	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2151808	2152026	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2152027	2152097	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2152098	2152211	1	-	0	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2152098	2152211	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2152212	2152320	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2152321	2152444	1	-	1	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2152321	2152444	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2152445	2152516	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2152517	2152636	1	-	1	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2152517	2152636	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2152637	2152726	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2152727	2152874	0.91	-	2	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2152727	2152874	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2152875	2152962	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2152963	2153104	0.91	-	0	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2152963	2153104	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2153105	2153199	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2153200	2153373	1	-	0	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2153200	2153373	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2153374	2154455	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2154456	2154567	1	-	1	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2154456	2154567	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2154568	2154643	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2154644	2154764	1	-	2	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2154644	2154764	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2154765	2154840	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2154841	2154916	0.84	-	0	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2154841	2154916	.	-	.	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	start_codon	2154914	2154916	.	-	0	transcript_id "Ledus.S5G019400.t1"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	transcript	2151963	2154916	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	stop_codon	2151960	2151962	.	-	0	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2151963	2151973	0.56	-	2	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2151963	2151973	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2151974	2152072	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2152073	2152211	0.66	-	0	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2152073	2152211	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2152212	2152320	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2152321	2152444	0.95	-	1	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2152321	2152444	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2152445	2152516	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2152517	2152636	1	-	1	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2152517	2152636	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2152637	2152726	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2152727	2152874	0.89	-	2	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2152727	2152874	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2152875	2152962	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2152963	2153104	0.89	-	0	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2152963	2153104	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2153105	2153199	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2153200	2153373	0.99	-	0	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2153200	2153373	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2153374	2154455	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2154456	2154567	1	-	1	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2154456	2154567	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2154568	2154643	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2154644	2154764	1	-	2	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2154644	2154764	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	intron	2154765	2154840	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	CDS	2154841	2154916	0.94	-	0	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	exon	2154841	2154916	.	-	.	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
Ledus.S5	AUGUSTUS	start_codon	2154914	2154916	.	-	0	transcript_id "Ledus.S5G019400.t2"; gene_id "Ledus.S5G019400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7043.t1 is derived from g6574.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	987109	995515	.	+	.	Ledus.C7G010400
Ledus.C7	AUGUSTUS	transcript	987109	995515	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	start_codon	987109	987111	.	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	987109	987141	0.66	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	987109	987141	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	987142	987251	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	987252	987296	0.63	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	987252	987296	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	987297	987479	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	987480	987524	0.93	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	987480	987524	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	987525	987754	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	987755	987862	0.97	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	987755	987862	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	987863	988106	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	988107	988167	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	988107	988167	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	988168	988245	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	988246	988396	1	+	2	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	988246	988396	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	988397	988519	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	988520	988677	1	+	1	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	988520	988677	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	988678	988776	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	988777	989042	1	+	2	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	988777	989042	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	989043	989291	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	989292	989510	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	989292	989510	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	989511	989638	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	989639	989747	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	989639	989747	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	989748	989852	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	989853	989968	1	+	2	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	989853	989968	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	989969	990137	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	990138	990236	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	990138	990236	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	990237	990354	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	990355	990464	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	990355	990464	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	990465	990584	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	990585	990659	1	+	1	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	990585	990659	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	990660	990813	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	990814	990892	1	+	1	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	990814	990892	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	990893	990994	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	990995	991141	0.96	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	990995	991141	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	991142	991249	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	991250	991330	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	991250	991330	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	991331	991463	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	991464	991583	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	991464	991583	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	991584	991672	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	991673	991795	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	991673	991795	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	991796	991872	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	991873	991953	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	991873	991953	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	991954	992133	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	992134	992216	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	992134	992216	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	992217	992312	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	992313	992421	1	+	1	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	992313	992421	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	992422	992506	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	992507	992575	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	992507	992575	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	992576	992699	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	992700	992810	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	992700	992810	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	992811	993098	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	993099	993154	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	993099	993154	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	993155	993478	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	993479	993527	0.68	+	1	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	993479	993527	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	993528	993758	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	993759	993860	0.99	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	993759	993860	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	993861	994059	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	994060	994131	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	994060	994131	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	994132	994244	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	994245	994310	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	994245	994310	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	994311	994393	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	994394	994459	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	994394	994459	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	994460	994680	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	994681	994767	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	994681	994767	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	994768	994858	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	994859	994972	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	994859	994972	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	994973	995056	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	995057	995131	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	995057	995131	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	995132	995223	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	995224	995310	1	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	995224	995310	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	intron	995311	995476	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	CDS	995477	995515	0.62	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	exon	995477	995515	.	+	.	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
Ledus.C7	AUGUSTUS	stop_codon	995516	995518	.	+	0	transcript_id "Ledus.C7G010400.t1"; gene_id "Ledus.C7G010400"
# This transcript jg4100.t2 is derived from g1536.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg4100.t3 is derived from g1536.t3 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4101.t1 is derived from g1537.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14689037	14694787	.	-	.	Ledus.S1G152200
Ledus.S1	AUGUSTUS	transcript	14689037	14694787	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	stop_codon	14689034	14689036	.	-	0	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14689037	14689106	0.78	-	1	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14689037	14689106	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14689107	14689197	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14689198	14689236	0.77	-	1	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14689198	14689236	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14689237	14689498	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14689499	14689545	0.99	-	0	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14689499	14689545	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14689546	14689689	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14689690	14689953	1	-	0	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14689690	14689953	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14689954	14690079	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14690080	14690191	1	-	1	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14690080	14690191	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14690192	14690277	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14690278	14690546	1	-	0	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14690278	14690546	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14690547	14690633	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14690634	14690792	1	-	0	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14690634	14690792	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14690793	14690907	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14690908	14691203	1	-	2	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14690908	14691203	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14691204	14691297	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14691298	14691355	1	-	0	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14691298	14691355	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14691356	14691445	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14691446	14693026	1	-	0	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14691446	14693026	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14693027	14693108	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14693109	14693166	1	-	1	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14693109	14693166	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14693167	14693264	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14693265	14693320	1	-	0	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14693265	14693320	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14693321	14693438	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14693439	14693604	1	-	1	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14693439	14693604	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14693605	14693696	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14693697	14694787	0.71	-	0	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14693697	14694787	.	-	.	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	start_codon	14694785	14694787	.	-	0	transcript_id "Ledus.S1G152200.t1"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	transcript	14689037	14694787	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	stop_codon	14689034	14689036	.	-	0	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14689037	14689106	0.71	-	1	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14689037	14689106	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14689107	14689197	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14689198	14689236	0.7	-	1	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14689198	14689236	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14689237	14689498	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14689499	14689545	0.99	-	0	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14689499	14689545	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14689546	14689689	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14689690	14689953	1	-	0	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14689690	14689953	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14689954	14690079	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14690080	14690191	1	-	1	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14690080	14690191	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14690192	14690277	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14690278	14690546	1	-	0	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14690278	14690546	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14690547	14690633	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14690634	14690792	1	-	0	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14690634	14690792	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14690793	14690907	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14690908	14691212	1	-	2	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14690908	14691212	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14691213	14691297	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14691298	14691355	1	-	0	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14691298	14691355	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14691356	14691445	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14691446	14693026	0.99	-	0	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14691446	14693026	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14693027	14693108	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14693109	14693166	1	-	1	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14693109	14693166	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14693167	14693264	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14693265	14693320	1	-	0	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14693265	14693320	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14693321	14693438	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14693439	14693604	1	-	1	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14693439	14693604	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	intron	14693605	14693696	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	CDS	14693697	14694787	0.67	-	0	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	exon	14693697	14694787	.	-	.	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
Ledus.S1	AUGUSTUS	start_codon	14694785	14694787	.	-	0	transcript_id "Ledus.S1G152200.t2"; gene_id "Ledus.S1G152200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4196.t1 is derived from g1632.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	15319326	15320548	.	+	.	Ledus.S1G161700
Ledus.S1	AUGUSTUS	transcript	15319326	15320548	.	+	.	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	start_codon	15319326	15319328	.	+	0	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	CDS	15319326	15319607	0.97	+	0	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	exon	15319326	15319607	.	+	.	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	intron	15319608	15319709	.	+	.	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	CDS	15319710	15319760	1	+	0	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	exon	15319710	15319760	.	+	.	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	intron	15319761	15319897	.	+	.	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	CDS	15319898	15319990	1	+	0	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	exon	15319898	15319990	.	+	.	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	intron	15319991	15320078	.	+	.	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	CDS	15320079	15320173	1	+	0	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	exon	15320079	15320173	.	+	.	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	intron	15320174	15320255	.	+	.	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	CDS	15320256	15320370	1	+	1	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	exon	15320256	15320370	.	+	.	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	intron	15320371	15320464	.	+	.	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	CDS	15320465	15320548	1	+	0	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	exon	15320465	15320548	.	+	.	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
Ledus.S1	AUGUSTUS	stop_codon	15320549	15320551	.	+	0	transcript_id "Ledus.S1G161700.t1"; gene_id "Ledus.S1G161700"
# This transcript jg1437.t2 is derived from g8298.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1438.t1 is derived from g8299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10136742	10138162	.	+	.	Ledus.S2G132000
Ledus.S2	AUGUSTUS	transcript	10136742	10138162	.	+	.	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	start_codon	10136742	10136744	.	+	0	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	CDS	10136742	10136774	0.47	+	0	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	exon	10136742	10136774	.	+	.	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	intron	10136775	10137200	.	+	.	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	CDS	10137201	10137286	0.98	+	0	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	exon	10137201	10137286	.	+	.	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	intron	10137287	10137473	.	+	.	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	CDS	10137474	10137503	0.58	+	1	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	exon	10137474	10137503	.	+	.	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	intron	10137504	10137643	.	+	.	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	CDS	10137644	10137754	0.58	+	1	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	exon	10137644	10137754	.	+	.	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	intron	10137755	10137974	.	+	.	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	CDS	10137975	10138067	0.78	+	1	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	exon	10137975	10138067	.	+	.	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	intron	10138068	10138158	.	+	.	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	CDS	10138159	10138162	1	+	1	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	exon	10138159	10138162	.	+	.	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
Ledus.S2	AUGUSTUS	stop_codon	10138163	10138165	.	+	0	transcript_id "Ledus.S2G132000.t1"; gene_id "Ledus.S2G132000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7808.t1 is derived from g12479.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6941378	6945256	.	-	.	Ledus.S5G058600
Ledus.S5	AUGUSTUS	transcript	6941378	6945256	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	stop_codon	6941375	6941377	.	-	0	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	CDS	6941378	6941378	0.64	-	1	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	exon	6941378	6941378	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	intron	6941379	6941452	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	CDS	6941453	6941486	0.64	-	2	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	exon	6941453	6941486	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	intron	6941487	6941604	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	CDS	6941605	6941680	0.62	-	0	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	exon	6941605	6941680	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	intron	6941681	6941770	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	CDS	6941771	6942006	1	-	2	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	exon	6941771	6942006	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	intron	6942007	6942090	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	CDS	6942091	6943176	1	-	2	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	exon	6942091	6943176	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	intron	6943177	6943680	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	CDS	6943681	6944990	0.97	-	1	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	exon	6943681	6944990	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	intron	6944991	6945089	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	CDS	6945090	6945256	0.97	-	0	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	exon	6945090	6945256	.	-	.	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
Ledus.S5	AUGUSTUS	start_codon	6945254	6945256	.	-	0	transcript_id "Ledus.S5G058600.t1"; gene_id "Ledus.S5G058600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7479.t1 is derived from g12150.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	3070323	3070664	.	-	.	Ledus.S5G025700
Ledus.S5	AUGUSTUS	transcript	3070323	3070664	.	-	.	transcript_id "Ledus.S5G025700.t1"; gene_id "Ledus.S5G025700"
Ledus.S5	AUGUSTUS	stop_codon	3070320	3070322	.	-	0	transcript_id "Ledus.S5G025700.t1"; gene_id "Ledus.S5G025700"
Ledus.S5	AUGUSTUS	CDS	3070323	3070664	0.95	-	0	transcript_id "Ledus.S5G025700.t1"; gene_id "Ledus.S5G025700"
Ledus.S5	AUGUSTUS	exon	3070323	3070664	.	-	.	transcript_id "Ledus.S5G025700.t1"; gene_id "Ledus.S5G025700"
Ledus.S5	AUGUSTUS	start_codon	3070662	3070664	.	-	0	transcript_id "Ledus.S5G025700.t1"; gene_id "Ledus.S5G025700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10927.t1 is derived from g4545.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	630328	631179	.	-	.	Ledus.S4G008300
Ledus.S4	AUGUSTUS	transcript	630328	631179	.	-	.	transcript_id "Ledus.S4G008300.t1"; gene_id "Ledus.S4G008300"
Ledus.S4	AUGUSTUS	stop_codon	630325	630327	.	-	0	transcript_id "Ledus.S4G008300.t1"; gene_id "Ledus.S4G008300"
Ledus.S4	AUGUSTUS	CDS	630328	631065	1	-	0	transcript_id "Ledus.S4G008300.t1"; gene_id "Ledus.S4G008300"
Ledus.S4	AUGUSTUS	exon	630328	631065	.	-	.	transcript_id "Ledus.S4G008300.t1"; gene_id "Ledus.S4G008300"
Ledus.S4	AUGUSTUS	intron	631066	631146	.	-	.	transcript_id "Ledus.S4G008300.t1"; gene_id "Ledus.S4G008300"
Ledus.S4	AUGUSTUS	CDS	631147	631179	0.96	-	0	transcript_id "Ledus.S4G008300.t1"; gene_id "Ledus.S4G008300"
Ledus.S4	AUGUSTUS	exon	631147	631179	.	-	.	transcript_id "Ledus.S4G008300.t1"; gene_id "Ledus.S4G008300"
Ledus.S4	AUGUSTUS	start_codon	631177	631179	.	-	0	transcript_id "Ledus.S4G008300.t1"; gene_id "Ledus.S4G008300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7070.t1 is derived from g6601.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1196734	1198305	.	-	.	Ledus.C7G013100
Ledus.C7	AUGUSTUS	transcript	1196894	1198305	.	-	.	transcript_id "Ledus.C7G013100.t1"; gene_id "Ledus.C7G013100"
Ledus.C7	AUGUSTUS	stop_codon	1196891	1196893	.	-	0	transcript_id "Ledus.C7G013100.t1"; gene_id "Ledus.C7G013100"
Ledus.C7	AUGUSTUS	CDS	1196894	1196965	1	-	0	transcript_id "Ledus.C7G013100.t1"; gene_id "Ledus.C7G013100"
Ledus.C7	AUGUSTUS	exon	1196894	1196965	.	-	.	transcript_id "Ledus.C7G013100.t1"; gene_id "Ledus.C7G013100"
Ledus.C7	AUGUSTUS	intron	1196966	1197069	.	-	.	transcript_id "Ledus.C7G013100.t1"; gene_id "Ledus.C7G013100"
Ledus.C7	AUGUSTUS	CDS	1197070	1198305	0.99	-	0	transcript_id "Ledus.C7G013100.t1"; gene_id "Ledus.C7G013100"
Ledus.C7	AUGUSTUS	exon	1197070	1198305	.	-	.	transcript_id "Ledus.C7G013100.t1"; gene_id "Ledus.C7G013100"
Ledus.C7	AUGUSTUS	start_codon	1198303	1198305	.	-	0	transcript_id "Ledus.C7G013100.t1"; gene_id "Ledus.C7G013100"
Ledus.C7	AUGUSTUS	transcript	1196734	1198305	.	-	.	transcript_id "Ledus.C7G013100.t2"; gene_id "Ledus.C7G013100"
Ledus.C7	AUGUSTUS	stop_codon	1196731	1196733	.	-	0	transcript_id "Ledus.C7G013100.t2"; gene_id "Ledus.C7G013100"
Ledus.C7	AUGUSTUS	CDS	1196734	1198305	1	-	0	transcript_id "Ledus.C7G013100.t2"; gene_id "Ledus.C7G013100"
Ledus.C7	AUGUSTUS	exon	1196734	1198305	.	-	.	transcript_id "Ledus.C7G013100.t2"; gene_id "Ledus.C7G013100"
Ledus.C7	AUGUSTUS	start_codon	1198303	1198305	.	-	0	transcript_id "Ledus.C7G013100.t2"; gene_id "Ledus.C7G013100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9846.t1 is derived from g10876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10498134	10498910	.	+	.	Ledus.S3G132300
Ledus.S3	AUGUSTUS	transcript	10498134	10498910	.	+	.	transcript_id "Ledus.S3G132300.t1"; gene_id "Ledus.S3G132300"
Ledus.S3	AUGUSTUS	start_codon	10498134	10498136	.	+	0	transcript_id "Ledus.S3G132300.t1"; gene_id "Ledus.S3G132300"
Ledus.S3	AUGUSTUS	CDS	10498134	10498910	0.81	+	0	transcript_id "Ledus.S3G132300.t1"; gene_id "Ledus.S3G132300"
Ledus.S3	AUGUSTUS	exon	10498134	10498910	.	+	.	transcript_id "Ledus.S3G132300.t1"; gene_id "Ledus.S3G132300"
Ledus.S3	AUGUSTUS	stop_codon	10498911	10498913	.	+	0	transcript_id "Ledus.S3G132300.t1"; gene_id "Ledus.S3G132300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6156.t1 is derived from g3599.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29312804	29314177	.	-	.	Ledus.S1G357700
Ledus.S1	AUGUSTUS	transcript	29312804	29314177	.	-	.	transcript_id "Ledus.S1G357700.t1"; gene_id "Ledus.S1G357700"
Ledus.S1	AUGUSTUS	stop_codon	29312801	29312803	.	-	0	transcript_id "Ledus.S1G357700.t1"; gene_id "Ledus.S1G357700"
Ledus.S1	AUGUSTUS	CDS	29312804	29314177	0.78	-	0	transcript_id "Ledus.S1G357700.t1"; gene_id "Ledus.S1G357700"
Ledus.S1	AUGUSTUS	exon	29312804	29314177	.	-	.	transcript_id "Ledus.S1G357700.t1"; gene_id "Ledus.S1G357700"
Ledus.S1	AUGUSTUS	start_codon	29314175	29314177	.	-	0	transcript_id "Ledus.S1G357700.t1"; gene_id "Ledus.S1G357700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2676.t1 is derived from g109.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1594128	1595249	.	+	.	Ledus.S1G009700
Ledus.S1	AUGUSTUS	transcript	1594128	1595249	.	+	.	transcript_id "Ledus.S1G009700.t1"; gene_id "Ledus.S1G009700"
Ledus.S1	AUGUSTUS	start_codon	1594128	1594130	.	+	0	transcript_id "Ledus.S1G009700.t1"; gene_id "Ledus.S1G009700"
Ledus.S1	AUGUSTUS	CDS	1594128	1595249	0.94	+	0	transcript_id "Ledus.S1G009700.t1"; gene_id "Ledus.S1G009700"
Ledus.S1	AUGUSTUS	exon	1594128	1595249	.	+	.	transcript_id "Ledus.S1G009700.t1"; gene_id "Ledus.S1G009700"
Ledus.S1	AUGUSTUS	stop_codon	1595250	1595252	.	+	0	transcript_id "Ledus.S1G009700.t1"; gene_id "Ledus.S1G009700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6205.t1 is derived from g3648.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	29614737	29618107	.	-	.	Ledus.S1G362600
Ledus.S1	AUGUSTUS	transcript	29614737	29618107	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	stop_codon	29614734	29614736	.	-	0	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29614737	29614769	0.9	-	0	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29614737	29614769	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	intron	29614770	29614849	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29614850	29614912	1	-	0	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29614850	29614912	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	intron	29614913	29614999	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29615000	29615370	1	-	2	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29615000	29615370	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	intron	29615371	29615516	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29615517	29615616	1	-	0	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29615517	29615616	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	intron	29615617	29615692	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29615693	29615761	1	-	0	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29615693	29615761	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	intron	29615762	29615911	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29615912	29615995	1	-	0	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29615912	29615995	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	intron	29615996	29616173	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29616174	29616267	1	-	1	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29616174	29616267	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	intron	29616268	29616388	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29616389	29616438	1	-	0	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29616389	29616438	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	intron	29616439	29616525	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29616526	29616627	1	-	0	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29616526	29616627	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	intron	29616628	29616846	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29616847	29616924	1	-	0	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29616847	29616924	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	intron	29616925	29617095	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29617096	29617362	1	-	0	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29617096	29617362	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	intron	29617363	29617465	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29617466	29617565	0.99	-	1	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29617466	29617565	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	intron	29617566	29617685	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	CDS	29617686	29618107	0.85	-	0	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	exon	29617686	29618107	.	-	.	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
Ledus.S1	AUGUSTUS	start_codon	29618105	29618107	.	-	0	transcript_id "Ledus.S1G362600.t1"; gene_id "Ledus.S1G362600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12371.t1 is derived from g5992.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11469532	11473653	.	-	.	Ledus.S4G152700
Ledus.S4	AUGUSTUS	transcript	11469532	11473653	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	stop_codon	11469529	11469531	.	-	0	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11469532	11469535	0.86	-	1	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11469532	11469535	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11469536	11469617	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11469618	11469684	0.8	-	2	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11469618	11469684	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11469685	11469948	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11469949	11470040	0.77	-	1	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11469949	11470040	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11470041	11470161	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11470162	11470232	1	-	0	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11470162	11470232	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11470233	11470438	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11470439	11470567	1	-	0	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11470439	11470567	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11470568	11470656	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11470657	11470790	1	-	2	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11470657	11470790	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11470791	11470910	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11470911	11470968	1	-	0	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11470911	11470968	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11470969	11471068	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11471069	11471150	1	-	1	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11471069	11471150	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11471151	11471310	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11471311	11471369	1	-	0	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11471311	11471369	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11471370	11471498	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11471499	11471673	1	-	1	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11471499	11471673	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11471674	11471811	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11471812	11471990	1	-	0	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11471812	11471990	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11471991	11472507	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11472508	11472700	0.86	-	1	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11472508	11472700	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11472701	11472823	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11472824	11472946	0.84	-	1	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11472824	11472946	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	intron	11472947	11473102	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	CDS	11473103	11473653	0.48	-	0	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	exon	11473103	11473653	.	-	.	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
Ledus.S4	AUGUSTUS	start_codon	11473651	11473653	.	-	0	transcript_id "Ledus.S4G152700.t1"; gene_id "Ledus.S4G152700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6588.t1 is derived from g4031.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32534496	32536718	.	+	.	Ledus.S1G400900
Ledus.S1	AUGUSTUS	transcript	32534496	32536718	.	+	.	transcript_id "Ledus.S1G400900.t1"; gene_id "Ledus.S1G400900"
Ledus.S1	AUGUSTUS	start_codon	32534496	32534498	.	+	0	transcript_id "Ledus.S1G400900.t1"; gene_id "Ledus.S1G400900"
Ledus.S1	AUGUSTUS	CDS	32534496	32536718	0.72	+	0	transcript_id "Ledus.S1G400900.t1"; gene_id "Ledus.S1G400900"
Ledus.S1	AUGUSTUS	exon	32534496	32536718	.	+	.	transcript_id "Ledus.S1G400900.t1"; gene_id "Ledus.S1G400900"
Ledus.S1	AUGUSTUS	stop_codon	32536719	32536721	.	+	0	transcript_id "Ledus.S1G400900.t1"; gene_id "Ledus.S1G400900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2762.t1 is derived from g196.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3355650	3376855	.	+	.	Ledus.S1G018300
Ledus.S1	AUGUSTUS	transcript	3355650	3376855	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	start_codon	3355650	3355652	.	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3355650	3355776	0.98	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3355650	3355776	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3355777	3355877	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3355878	3355995	0.19	+	2	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3355878	3355995	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3355996	3356649	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3356650	3358015	0.41	+	1	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3356650	3358015	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3358016	3358133	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3358134	3358647	0.98	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3358134	3358647	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3358648	3358810	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3358811	3359022	0.96	+	2	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3358811	3359022	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3359023	3359117	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3359118	3359210	0.97	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3359118	3359210	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3359211	3359320	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3359321	3359370	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3359321	3359370	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3359371	3359688	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3359689	3359911	0.67	+	1	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3359689	3359911	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3359912	3360070	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3360071	3360184	0.31	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3360071	3360184	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3360185	3360350	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3360351	3361226	0.32	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3360351	3361226	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3361227	3361358	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3361359	3361694	0.98	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3361359	3361694	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3361695	3361911	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3361912	3362001	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3361912	3362001	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3362002	3362253	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3362254	3362547	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3362254	3362547	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3362548	3362630	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3362631	3362888	0.98	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3362631	3362888	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3362889	3362991	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3362992	3363270	0.86	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3362992	3363270	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3363271	3363456	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3363457	3364470	0.95	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3363457	3364470	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3364471	3364571	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3364572	3367616	0.61	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3364572	3367616	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3367617	3368072	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3368073	3368246	0.98	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3368073	3368246	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3368247	3368373	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3368374	3368538	0.93	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3368374	3368538	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3368539	3368658	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3368659	3368913	0.96	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3368659	3368913	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3368914	3369048	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3369049	3369462	0.8	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3369049	3369462	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3369463	3369541	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3369542	3369757	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3369542	3369757	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3369758	3369838	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3369839	3370057	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3369839	3370057	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3370058	3370135	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3370136	3370233	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3370136	3370233	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3370234	3370332	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3370333	3371062	0.76	+	1	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3370333	3371062	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3371063	3371183	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3371184	3371256	0.74	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3371184	3371256	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3371257	3371537	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3371538	3371662	0.91	+	2	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3371538	3371662	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3371663	3371754	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3371755	3371826	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3371755	3371826	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3371827	3371917	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3371918	3372034	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3371918	3372034	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3372035	3372238	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3372239	3372444	0.99	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3372239	3372444	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3372445	3372851	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3372852	3372999	0.97	+	1	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3372852	3372999	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3373000	3373201	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3373202	3373354	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3373202	3373354	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3373355	3373435	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3373436	3373504	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3373436	3373504	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3373505	3373589	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3373590	3373636	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3373590	3373636	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3373637	3373732	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3373733	3373891	0.87	+	1	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3373733	3373891	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3373892	3373992	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3373993	3374119	0.55	+	1	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3373993	3374119	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3374120	3374268	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3374269	3374294	0.46	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3374269	3374294	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3374295	3374427	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3374428	3374726	0.98	+	1	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3374428	3374726	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3374727	3374830	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3374831	3374946	1	+	2	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3374831	3374946	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3374947	3375058	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3375059	3375196	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3375059	3375196	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3375197	3375291	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3375292	3375417	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3375292	3375417	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3375418	3375488	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3375489	3375551	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3375489	3375551	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3375552	3375751	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3375752	3375820	1	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3375752	3375820	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3375821	3375907	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3375908	3376060	0.84	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3375908	3376060	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3376061	3376165	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3376166	3376264	0.94	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3376166	3376264	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3376265	3376383	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3376384	3376457	0.77	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3376384	3376457	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3376458	3376586	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3376587	3376603	0.76	+	1	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3376587	3376603	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	intron	3376604	3376742	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	CDS	3376743	3376855	0.87	+	2	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	exon	3376743	3376855	.	+	.	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
Ledus.S1	AUGUSTUS	stop_codon	3376856	3376858	.	+	0	transcript_id "Ledus.S1G018300.t1"; gene_id "Ledus.S1G018300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6586.t1 is derived from g4029.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32520124	32525668	.	+	.	Ledus.S1G400700
Ledus.S1	AUGUSTUS	transcript	32520124	32525668	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	start_codon	32520124	32520126	.	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32520124	32520480	0.69	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32520124	32520480	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32520481	32520603	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32520604	32520945	1	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32520604	32520945	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32520946	32521085	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32521086	32521218	0.99	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32521086	32521218	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32521219	32521336	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32521337	32521509	0.99	+	2	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32521337	32521509	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32521510	32521597	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32521598	32521671	1	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32521598	32521671	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32521672	32521752	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32521753	32521788	1	+	1	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32521753	32521788	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32521789	32521873	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32521874	32521961	0.93	+	1	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32521874	32521961	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32521962	32522071	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32522072	32522131	0.95	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32522072	32522131	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32522132	32522259	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32522260	32522500	0.97	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32522260	32522500	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32522501	32522639	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32522640	32522686	0.99	+	2	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32522640	32522686	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32522687	32522767	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32522768	32522821	0.99	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32522768	32522821	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32522822	32522906	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32522907	32523008	1	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32522907	32523008	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32523009	32523096	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32523097	32523207	1	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32523097	32523207	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32523208	32523302	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32523303	32523368	1	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32523303	32523368	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32523369	32523458	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32523459	32523557	1	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32523459	32523557	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32523558	32523645	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32523646	32523855	1	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32523646	32523855	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32523856	32523949	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32523950	32524258	0.91	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32523950	32524258	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32524259	32524370	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32524371	32524558	0.96	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32524371	32524558	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32524559	32524641	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32524642	32524744	1	+	1	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32524642	32524744	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32524745	32524825	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32524826	32524971	0.86	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32524826	32524971	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32524972	32525083	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32525084	32525163	1	+	1	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32525084	32525163	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	intron	32525164	32525321	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	CDS	32525322	32525668	0.93	+	2	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	exon	32525322	32525668	.	+	.	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
Ledus.S1	AUGUSTUS	stop_codon	32525669	32525671	.	+	0	transcript_id "Ledus.S1G400700.t1"; gene_id "Ledus.S1G400700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9262.t1 is derived from g10292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5659559	5662108	.	-	.	Ledus.S3G073900
Ledus.S3	AUGUSTUS	transcript	5659559	5662108	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	stop_codon	5659556	5659558	.	-	0	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	CDS	5659559	5660302	0.89	-	0	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	exon	5659559	5660302	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	intron	5660303	5660445	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	CDS	5660446	5660607	0.89	-	0	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	exon	5660446	5660607	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	intron	5660608	5660800	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	CDS	5660801	5660857	0.89	-	0	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	exon	5660801	5660857	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	intron	5660858	5661024	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	CDS	5661025	5661099	0.99	-	0	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	exon	5661025	5661099	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	intron	5661100	5661183	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	CDS	5661184	5661330	1	-	0	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	exon	5661184	5661330	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	intron	5661331	5661419	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	CDS	5661420	5661594	1	-	1	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	exon	5661420	5661594	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	intron	5661595	5661691	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	CDS	5661692	5661792	1	-	0	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	exon	5661692	5661792	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	intron	5661793	5661890	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	CDS	5661891	5661998	0.38	-	0	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	exon	5661891	5661998	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	intron	5661999	5662054	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	CDS	5662055	5662108	0.43	-	0	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	exon	5662055	5662108	.	-	.	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
Ledus.S3	AUGUSTUS	start_codon	5662106	5662108	.	-	0	transcript_id "Ledus.S3G073900.t1"; gene_id "Ledus.S3G073900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12390.t1 is derived from g6011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11598246	11605490	.	+	.	Ledus.S4G154600
Ledus.S4	AUGUSTUS	transcript	11598246	11605490	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	start_codon	11598246	11598248	.	+	0	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	CDS	11598246	11598529	0.26	+	0	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	exon	11598246	11598529	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	intron	11598530	11598612	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	CDS	11598613	11598832	0.72	+	1	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	exon	11598613	11598832	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	intron	11598833	11599180	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	CDS	11599181	11600251	0.99	+	0	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	exon	11599181	11600251	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	intron	11600252	11600346	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	CDS	11600347	11600444	1	+	0	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	exon	11600347	11600444	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	intron	11600445	11600778	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	CDS	11600779	11600953	0.98	+	1	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	exon	11600779	11600953	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	intron	11600954	11601060	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	CDS	11601061	11603310	0.72	+	0	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	exon	11601061	11603310	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	intron	11603311	11603454	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	CDS	11603455	11604503	0.99	+	0	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	exon	11603455	11604503	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	intron	11604504	11604601	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	CDS	11604602	11605490	0.48	+	1	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	exon	11604602	11605490	.	+	.	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
Ledus.S4	AUGUSTUS	stop_codon	11605491	11605493	.	+	0	transcript_id "Ledus.S4G154600.t1"; gene_id "Ledus.S4G154600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3702.t1 is derived from g1138.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11010643	11012665	.	+	.	Ledus.S1G112300
Ledus.S1	AUGUSTUS	transcript	11010643	11012665	.	+	.	transcript_id "Ledus.S1G112300.t1"; gene_id "Ledus.S1G112300"
Ledus.S1	AUGUSTUS	start_codon	11010643	11010645	.	+	0	transcript_id "Ledus.S1G112300.t1"; gene_id "Ledus.S1G112300"
Ledus.S1	AUGUSTUS	CDS	11010643	11010784	0.01	+	0	transcript_id "Ledus.S1G112300.t1"; gene_id "Ledus.S1G112300"
Ledus.S1	AUGUSTUS	exon	11010643	11010784	.	+	.	transcript_id "Ledus.S1G112300.t1"; gene_id "Ledus.S1G112300"
Ledus.S1	AUGUSTUS	intron	11010785	11012645	.	+	.	transcript_id "Ledus.S1G112300.t1"; gene_id "Ledus.S1G112300"
Ledus.S1	AUGUSTUS	CDS	11012646	11012665	0.02	+	2	transcript_id "Ledus.S1G112300.t1"; gene_id "Ledus.S1G112300"
Ledus.S1	AUGUSTUS	exon	11012646	11012665	.	+	.	transcript_id "Ledus.S1G112300.t1"; gene_id "Ledus.S1G112300"
Ledus.S1	AUGUSTUS	stop_codon	11012666	11012668	.	+	0	transcript_id "Ledus.S1G112300.t1"; gene_id "Ledus.S1G112300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2685.t1 is derived from g118.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	1780525	1780947	.	-	.	Ledus.S1G010600
Ledus.S1	AUGUSTUS	transcript	1780525	1780947	.	-	.	transcript_id "Ledus.S1G010600.t1"; gene_id "Ledus.S1G010600"
Ledus.S1	AUGUSTUS	stop_codon	1780522	1780524	.	-	0	transcript_id "Ledus.S1G010600.t1"; gene_id "Ledus.S1G010600"
Ledus.S1	AUGUSTUS	CDS	1780525	1780678	0.22	-	1	transcript_id "Ledus.S1G010600.t1"; gene_id "Ledus.S1G010600"
Ledus.S1	AUGUSTUS	exon	1780525	1780678	.	-	.	transcript_id "Ledus.S1G010600.t1"; gene_id "Ledus.S1G010600"
Ledus.S1	AUGUSTUS	intron	1780679	1780894	.	-	.	transcript_id "Ledus.S1G010600.t1"; gene_id "Ledus.S1G010600"
Ledus.S1	AUGUSTUS	CDS	1780895	1780947	0.53	-	0	transcript_id "Ledus.S1G010600.t1"; gene_id "Ledus.S1G010600"
Ledus.S1	AUGUSTUS	exon	1780895	1780947	.	-	.	transcript_id "Ledus.S1G010600.t1"; gene_id "Ledus.S1G010600"
Ledus.S1	AUGUSTUS	start_codon	1780945	1780947	.	-	0	transcript_id "Ledus.S1G010600.t1"; gene_id "Ledus.S1G010600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7328.t1 is derived from g11999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1208472	1208678	.	-	.	Ledus.S5G010600
Ledus.S5	AUGUSTUS	transcript	1208472	1208678	.	-	.	transcript_id "Ledus.S5G010600.t1"; gene_id "Ledus.S5G010600"
Ledus.S5	AUGUSTUS	stop_codon	1208469	1208471	.	-	0	transcript_id "Ledus.S5G010600.t1"; gene_id "Ledus.S5G010600"
Ledus.S5	AUGUSTUS	CDS	1208472	1208678	0.97	-	0	transcript_id "Ledus.S5G010600.t1"; gene_id "Ledus.S5G010600"
Ledus.S5	AUGUSTUS	exon	1208472	1208678	.	-	.	transcript_id "Ledus.S5G010600.t1"; gene_id "Ledus.S5G010600"
Ledus.S5	AUGUSTUS	start_codon	1208676	1208678	.	-	0	transcript_id "Ledus.S5G010600.t1"; gene_id "Ledus.S5G010600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg135.t1 is derived from g6996.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	236170	236505	.	-	.	Ledus.S2G001700
Ledus.S2	AUGUSTUS	transcript	236170	236505	.	-	.	transcript_id "Ledus.S2G001700.t1"; gene_id "Ledus.S2G001700"
Ledus.S2	AUGUSTUS	stop_codon	236167	236169	.	-	0	transcript_id "Ledus.S2G001700.t1"; gene_id "Ledus.S2G001700"
Ledus.S2	AUGUSTUS	CDS	236170	236505	0.55	-	0	transcript_id "Ledus.S2G001700.t1"; gene_id "Ledus.S2G001700"
Ledus.S2	AUGUSTUS	exon	236170	236505	.	-	.	transcript_id "Ledus.S2G001700.t1"; gene_id "Ledus.S2G001700"
Ledus.S2	AUGUSTUS	start_codon	236503	236505	.	-	0	transcript_id "Ledus.S2G001700.t1"; gene_id "Ledus.S2G001700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6349.t1 is derived from g3792.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30694320	30695718	.	-	.	Ledus.S1G377000
Ledus.S1	AUGUSTUS	transcript	30694937	30695718	.	-	.	transcript_id "Ledus.S1G377000.t1"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	stop_codon	30694934	30694936	.	-	0	transcript_id "Ledus.S1G377000.t1"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	CDS	30694937	30694945	0.98	-	0	transcript_id "Ledus.S1G377000.t1"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	exon	30694937	30694945	.	-	.	transcript_id "Ledus.S1G377000.t1"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	intron	30694946	30695030	.	-	.	transcript_id "Ledus.S1G377000.t1"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	CDS	30695031	30695428	0.98	-	2	transcript_id "Ledus.S1G377000.t1"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	exon	30695031	30695428	.	-	.	transcript_id "Ledus.S1G377000.t1"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	intron	30695429	30695507	.	-	.	transcript_id "Ledus.S1G377000.t1"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	CDS	30695508	30695718	0.56	-	0	transcript_id "Ledus.S1G377000.t1"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	exon	30695508	30695718	.	-	.	transcript_id "Ledus.S1G377000.t1"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	start_codon	30695716	30695718	.	-	0	transcript_id "Ledus.S1G377000.t1"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	transcript	30694320	30695718	.	-	.	transcript_id "Ledus.S1G377000.t2"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	stop_codon	30694317	30694319	.	-	0	transcript_id "Ledus.S1G377000.t2"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	CDS	30694320	30695428	1	-	2	transcript_id "Ledus.S1G377000.t2"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	exon	30694320	30695428	.	-	.	transcript_id "Ledus.S1G377000.t2"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	intron	30695429	30695507	.	-	.	transcript_id "Ledus.S1G377000.t2"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	CDS	30695508	30695718	0.52	-	0	transcript_id "Ledus.S1G377000.t2"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	exon	30695508	30695718	.	-	.	transcript_id "Ledus.S1G377000.t2"; gene_id "Ledus.S1G377000"
Ledus.S1	AUGUSTUS	start_codon	30695716	30695718	.	-	0	transcript_id "Ledus.S1G377000.t2"; gene_id "Ledus.S1G377000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5243.t1 is derived from g2682.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22643486	22644165	.	+	.	Ledus.S1G266400
Ledus.S1	AUGUSTUS	transcript	22643486	22644165	.	+	.	transcript_id "Ledus.S1G266400.t1"; gene_id "Ledus.S1G266400"
Ledus.S1	AUGUSTUS	start_codon	22643486	22643488	.	+	0	transcript_id "Ledus.S1G266400.t1"; gene_id "Ledus.S1G266400"
Ledus.S1	AUGUSTUS	CDS	22643486	22643662	0.98	+	0	transcript_id "Ledus.S1G266400.t1"; gene_id "Ledus.S1G266400"
Ledus.S1	AUGUSTUS	exon	22643486	22643662	.	+	.	transcript_id "Ledus.S1G266400.t1"; gene_id "Ledus.S1G266400"
Ledus.S1	AUGUSTUS	intron	22643663	22643748	.	+	.	transcript_id "Ledus.S1G266400.t1"; gene_id "Ledus.S1G266400"
Ledus.S1	AUGUSTUS	CDS	22643749	22643814	1	+	0	transcript_id "Ledus.S1G266400.t1"; gene_id "Ledus.S1G266400"
Ledus.S1	AUGUSTUS	exon	22643749	22643814	.	+	.	transcript_id "Ledus.S1G266400.t1"; gene_id "Ledus.S1G266400"
Ledus.S1	AUGUSTUS	intron	22643815	22643910	.	+	.	transcript_id "Ledus.S1G266400.t1"; gene_id "Ledus.S1G266400"
Ledus.S1	AUGUSTUS	CDS	22643911	22644165	0.99	+	0	transcript_id "Ledus.S1G266400.t1"; gene_id "Ledus.S1G266400"
Ledus.S1	AUGUSTUS	exon	22643911	22644165	.	+	.	transcript_id "Ledus.S1G266400.t1"; gene_id "Ledus.S1G266400"
Ledus.S1	AUGUSTUS	stop_codon	22644166	22644168	.	+	0	transcript_id "Ledus.S1G266400.t1"; gene_id "Ledus.S1G266400"
# This transcript jg2868.t2 is derived from g302.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg2868.t3 is derived from g302.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2869.t1 is derived from g303.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4294394	4297664	.	+	.	Ledus.S1G029000
Ledus.S1	AUGUSTUS	transcript	4294394	4297664	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	start_codon	4294394	4294396	.	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4294394	4294420	0.51	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4294394	4294420	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4294421	4294516	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4294517	4294588	1	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4294517	4294588	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4294589	4294688	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4294689	4294695	0.95	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4294689	4294695	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4294696	4294829	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4294830	4294903	0.87	+	2	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4294830	4294903	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4294904	4295189	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4295190	4295300	1	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4295190	4295300	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4295301	4295452	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4295453	4295564	1	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4295453	4295564	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4295565	4295727	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4295728	4295792	1	+	2	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4295728	4295792	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4295793	4296025	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4296026	4296103	1	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4296026	4296103	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4296104	4296225	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4296226	4296300	1	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4296226	4296300	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4296301	4296445	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4296446	4296598	1	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4296446	4296598	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4296599	4296738	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4296739	4296873	1	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4296739	4296873	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4296874	4296949	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4296950	4297114	1	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4296950	4297114	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4297115	4297204	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4297205	4297327	1	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4297205	4297327	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4297328	4297427	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4297428	4297499	1	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4297428	4297499	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	intron	4297500	4297592	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	CDS	4297593	4297664	1	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	exon	4297593	4297664	.	+	.	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
Ledus.S1	AUGUSTUS	stop_codon	4297665	4297667	.	+	0	transcript_id "Ledus.S1G029000.t1"; gene_id "Ledus.S1G029000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4000.t1 is derived from g1436.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13992639	13995670	.	-	.	Ledus.S1G142100
Ledus.S1	AUGUSTUS	transcript	13992639	13995670	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	stop_codon	13992636	13992638	.	-	0	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	CDS	13992639	13993059	1	-	1	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	exon	13992639	13993059	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	intron	13993060	13993140	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	CDS	13993141	13993224	1	-	1	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	exon	13993141	13993224	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	intron	13993225	13993318	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	CDS	13993319	13993509	1	-	0	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	exon	13993319	13993509	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	intron	13993510	13993597	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	CDS	13993598	13993717	1	-	0	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	exon	13993598	13993717	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	intron	13993718	13993798	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	CDS	13993799	13993892	1	-	1	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	exon	13993799	13993892	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	intron	13993893	13993967	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	CDS	13993968	13994273	1	-	1	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	exon	13993968	13994273	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	intron	13994274	13994654	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	CDS	13994655	13994720	1	-	1	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	exon	13994655	13994720	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	intron	13994721	13994843	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	CDS	13994844	13995670	0.99	-	0	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	exon	13994844	13995670	.	-	.	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
Ledus.S1	AUGUSTUS	start_codon	13995668	13995670	.	-	0	transcript_id "Ledus.S1G142100.t1"; gene_id "Ledus.S1G142100"
# This transcript jg664.t2 is derived from g7525.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg665.t1 is derived from g7526.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3986110	3987327	.	+	.	Ledus.S2G054700
Ledus.S2	AUGUSTUS	transcript	3986110	3987327	.	+	.	transcript_id "Ledus.S2G054700.t1"; gene_id "Ledus.S2G054700"
Ledus.S2	AUGUSTUS	start_codon	3986110	3986112	.	+	0	transcript_id "Ledus.S2G054700.t1"; gene_id "Ledus.S2G054700"
Ledus.S2	AUGUSTUS	CDS	3986110	3987327	1	+	0	transcript_id "Ledus.S2G054700.t1"; gene_id "Ledus.S2G054700"
Ledus.S2	AUGUSTUS	exon	3986110	3987327	.	+	.	transcript_id "Ledus.S2G054700.t1"; gene_id "Ledus.S2G054700"
Ledus.S2	AUGUSTUS	stop_codon	3987328	3987330	.	+	0	transcript_id "Ledus.S2G054700.t1"; gene_id "Ledus.S2G054700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2771.t1 is derived from g205.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	3424050	3424517	.	-	.	Ledus.S1G019200
Ledus.S1	AUGUSTUS	transcript	3424050	3424517	.	-	.	transcript_id "Ledus.S1G019200.t1"; gene_id "Ledus.S1G019200"
Ledus.S1	AUGUSTUS	stop_codon	3424047	3424049	.	-	0	transcript_id "Ledus.S1G019200.t1"; gene_id "Ledus.S1G019200"
Ledus.S1	AUGUSTUS	CDS	3424050	3424517	1	-	0	transcript_id "Ledus.S1G019200.t1"; gene_id "Ledus.S1G019200"
Ledus.S1	AUGUSTUS	exon	3424050	3424517	.	-	.	transcript_id "Ledus.S1G019200.t1"; gene_id "Ledus.S1G019200"
Ledus.S1	AUGUSTUS	start_codon	3424515	3424517	.	-	0	transcript_id "Ledus.S1G019200.t1"; gene_id "Ledus.S1G019200"
# This transcript jg12148.t2 is derived from g5767.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12149.t1 is derived from g5768.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	9941460	9942857	.	-	.	Ledus.S4G130500
Ledus.S4	AUGUSTUS	transcript	9941460	9942857	.	-	.	transcript_id "Ledus.S4G130500.t1"; gene_id "Ledus.S4G130500"
Ledus.S4	AUGUSTUS	stop_codon	9941457	9941459	.	-	0	transcript_id "Ledus.S4G130500.t1"; gene_id "Ledus.S4G130500"
Ledus.S4	AUGUSTUS	CDS	9941460	9942606	1	-	1	transcript_id "Ledus.S4G130500.t1"; gene_id "Ledus.S4G130500"
Ledus.S4	AUGUSTUS	exon	9941460	9942606	.	-	.	transcript_id "Ledus.S4G130500.t1"; gene_id "Ledus.S4G130500"
Ledus.S4	AUGUSTUS	intron	9942607	9942675	.	-	.	transcript_id "Ledus.S4G130500.t1"; gene_id "Ledus.S4G130500"
Ledus.S4	AUGUSTUS	CDS	9942676	9942857	0.98	-	0	transcript_id "Ledus.S4G130500.t1"; gene_id "Ledus.S4G130500"
Ledus.S4	AUGUSTUS	exon	9942676	9942857	.	-	.	transcript_id "Ledus.S4G130500.t1"; gene_id "Ledus.S4G130500"
Ledus.S4	AUGUSTUS	start_codon	9942855	9942857	.	-	0	transcript_id "Ledus.S4G130500.t1"; gene_id "Ledus.S4G130500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1398.t1 is derived from g8259.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9825656	9830065	.	-	.	Ledus.S2G128000
Ledus.S2	AUGUSTUS	transcript	9825656	9830065	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	stop_codon	9825653	9825655	.	-	0	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	CDS	9825656	9825727	0.33	-	0	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	exon	9825656	9825727	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	intron	9825728	9825975	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	CDS	9825976	9826299	0.32	-	0	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	exon	9825976	9826299	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	intron	9826300	9826407	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	CDS	9826408	9826887	0.99	-	0	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	exon	9826408	9826887	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	intron	9826888	9827002	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	CDS	9827003	9827125	1	-	0	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	exon	9827003	9827125	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	intron	9827126	9827220	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	CDS	9827221	9827475	1	-	0	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	exon	9827221	9827475	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	intron	9827476	9827557	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	CDS	9827558	9828943	1	-	0	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	exon	9827558	9828943	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	intron	9828944	9829023	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	CDS	9829024	9829447	1	-	1	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	exon	9829024	9829447	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	intron	9829448	9829676	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	CDS	9829677	9829757	0.59	-	1	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	exon	9829677	9829757	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	intron	9829758	9830000	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	CDS	9830001	9830065	0.35	-	0	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	exon	9830001	9830065	.	-	.	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
Ledus.S2	AUGUSTUS	start_codon	9830063	9830065	.	-	0	transcript_id "Ledus.S2G128000.t1"; gene_id "Ledus.S2G128000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg110.t1 is derived from g9523.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C8	AUGUSTUS	gene	471902	472600	.	-	.	Ledus.C8G007000
Ledus.C8	AUGUSTUS	transcript	471902	472600	.	-	.	transcript_id "Ledus.C8G007000.t1"; gene_id "Ledus.C8G007000"
Ledus.C8	AUGUSTUS	stop_codon	471899	471901	.	-	0	transcript_id "Ledus.C8G007000.t1"; gene_id "Ledus.C8G007000"
Ledus.C8	AUGUSTUS	CDS	471902	472600	0.67	-	0	transcript_id "Ledus.C8G007000.t1"; gene_id "Ledus.C8G007000"
Ledus.C8	AUGUSTUS	exon	471902	472600	.	-	.	transcript_id "Ledus.C8G007000.t1"; gene_id "Ledus.C8G007000"
Ledus.C8	AUGUSTUS	start_codon	472598	472600	.	-	0	transcript_id "Ledus.C8G007000.t1"; gene_id "Ledus.C8G007000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg2527.t1 is derived from g9390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18598338	18599561	.	-	.	Ledus.S2G240900
Ledus.S2	AUGUSTUS	transcript	18598338	18599561	.	-	.	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	stop_codon	18598335	18598337	.	-	0	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	CDS	18598338	18598485	0.98	-	1	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	exon	18598338	18598485	.	-	.	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	intron	18598486	18598605	.	-	.	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	CDS	18598606	18598637	0.98	-	0	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	exon	18598606	18598637	.	-	.	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	intron	18598638	18599016	.	-	.	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	CDS	18599017	18599064	0.98	-	0	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	exon	18599017	18599064	.	-	.	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	intron	18599065	18599276	.	-	.	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	CDS	18599277	18599299	0.91	-	2	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	exon	18599277	18599299	.	-	.	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	intron	18599300	18599398	.	-	.	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	CDS	18599399	18599452	1	-	2	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	exon	18599399	18599452	.	-	.	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	intron	18599453	18599533	.	-	.	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	CDS	18599534	18599561	1	-	0	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	exon	18599534	18599561	.	-	.	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
Ledus.S2	AUGUSTUS	start_codon	18599559	18599561	.	-	0	transcript_id "Ledus.S2G240900.t1"; gene_id "Ledus.S2G240900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8306.t1 is derived from g12978.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10626182	10627808	.	+	.	Ledus.S5G108400
Ledus.S5	AUGUSTUS	transcript	10626182	10627808	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	start_codon	10626182	10626184	.	+	0	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	CDS	10626182	10626278	1	+	0	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	exon	10626182	10626278	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	intron	10626279	10626356	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	CDS	10626357	10626481	1	+	2	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	exon	10626357	10626481	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	intron	10626482	10626580	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	CDS	10626581	10626690	1	+	0	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	exon	10626581	10626690	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	intron	10626691	10626782	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	CDS	10626783	10626840	1	+	1	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	exon	10626783	10626840	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	intron	10626841	10626984	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	CDS	10626985	10627052	1	+	0	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	exon	10626985	10627052	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	intron	10627053	10627157	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	CDS	10627158	10627263	0.9	+	1	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	exon	10627158	10627263	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	intron	10627264	10627363	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	CDS	10627364	10627393	1	+	0	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	exon	10627364	10627393	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	intron	10627394	10627524	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	CDS	10627525	10627638	1	+	0	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	exon	10627525	10627638	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	intron	10627639	10627736	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	CDS	10627737	10627808	1	+	0	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	exon	10627737	10627808	.	+	.	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
Ledus.S5	AUGUSTUS	stop_codon	10627809	10627811	.	+	0	transcript_id "Ledus.S5G108400.t1"; gene_id "Ledus.S5G108400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1330.t1 is derived from g8191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9293766	9295237	.	+	.	Ledus.S2G121200
Ledus.S2	AUGUSTUS	transcript	9293766	9295237	.	+	.	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	start_codon	9293766	9293768	.	+	0	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	CDS	9293766	9293978	1	+	0	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	exon	9293766	9293978	.	+	.	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	intron	9293979	9294060	.	+	.	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	CDS	9294061	9294210	1	+	0	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	exon	9294061	9294210	.	+	.	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	intron	9294211	9294290	.	+	.	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	CDS	9294291	9294479	1	+	0	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	exon	9294291	9294479	.	+	.	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	intron	9294480	9294553	.	+	.	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	CDS	9294554	9294670	0.98	+	0	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	exon	9294554	9294670	.	+	.	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	intron	9294671	9294776	.	+	.	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	CDS	9294777	9294937	1	+	0	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	exon	9294777	9294937	.	+	.	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	intron	9294938	9295014	.	+	.	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	CDS	9295015	9295237	0.99	+	1	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	exon	9295015	9295237	.	+	.	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
Ledus.S2	AUGUSTUS	stop_codon	9295238	9295240	.	+	0	transcript_id "Ledus.S2G121200.t1"; gene_id "Ledus.S2G121200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1464.t1 is derived from g8325.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10340316	10342115	.	-	.	Ledus.S2G134600
Ledus.S2	AUGUSTUS	transcript	10340316	10342115	.	-	.	transcript_id "Ledus.S2G134600.t1"; gene_id "Ledus.S2G134600"
Ledus.S2	AUGUSTUS	stop_codon	10340313	10340315	.	-	0	transcript_id "Ledus.S2G134600.t1"; gene_id "Ledus.S2G134600"
Ledus.S2	AUGUSTUS	CDS	10340316	10342115	1	-	0	transcript_id "Ledus.S2G134600.t1"; gene_id "Ledus.S2G134600"
Ledus.S2	AUGUSTUS	exon	10340316	10342115	.	-	.	transcript_id "Ledus.S2G134600.t1"; gene_id "Ledus.S2G134600"
Ledus.S2	AUGUSTUS	start_codon	10342113	10342115	.	-	0	transcript_id "Ledus.S2G134600.t1"; gene_id "Ledus.S2G134600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5311.t1 is derived from g2750.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23258248	23260555	.	-	.	Ledus.S1G273200
Ledus.S1	AUGUSTUS	transcript	23258248	23260555	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	stop_codon	23258245	23258247	.	-	0	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	CDS	23258248	23258288	0.98	-	2	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	exon	23258248	23258288	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	intron	23258289	23258370	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	CDS	23258371	23258457	1	-	2	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	exon	23258371	23258457	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	intron	23258458	23258541	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	CDS	23258542	23258655	1	-	2	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	exon	23258542	23258655	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	intron	23258656	23258750	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	CDS	23258751	23258976	1	-	0	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	exon	23258751	23258976	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	intron	23258977	23259059	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	CDS	23259060	23259239	1	-	0	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	exon	23259060	23259239	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	intron	23259240	23259342	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	CDS	23259343	23259489	1	-	0	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	exon	23259343	23259489	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	intron	23259490	23259683	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	CDS	23259684	23259854	1	-	0	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	exon	23259684	23259854	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	intron	23259855	23259948	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	CDS	23259949	23260179	0.97	-	0	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	exon	23259949	23260179	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	intron	23260180	23260282	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	CDS	23260283	23260555	0.81	-	0	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	exon	23260283	23260555	.	-	.	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
Ledus.S1	AUGUSTUS	start_codon	23260553	23260555	.	-	0	transcript_id "Ledus.S1G273200.t1"; gene_id "Ledus.S1G273200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1431.t1 is derived from g8292.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10062997	10063812	.	+	.	Ledus.S2G131300
Ledus.S2	AUGUSTUS	transcript	10062997	10063812	.	+	.	transcript_id "Ledus.S2G131300.t1"; gene_id "Ledus.S2G131300"
Ledus.S2	AUGUSTUS	start_codon	10062997	10062999	.	+	0	transcript_id "Ledus.S2G131300.t1"; gene_id "Ledus.S2G131300"
Ledus.S2	AUGUSTUS	CDS	10062997	10063812	1	+	0	transcript_id "Ledus.S2G131300.t1"; gene_id "Ledus.S2G131300"
Ledus.S2	AUGUSTUS	exon	10062997	10063812	.	+	.	transcript_id "Ledus.S2G131300.t1"; gene_id "Ledus.S2G131300"
Ledus.S2	AUGUSTUS	stop_codon	10063813	10063815	.	+	0	transcript_id "Ledus.S2G131300.t1"; gene_id "Ledus.S2G131300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8943.t1 is derived from g9973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3337686	3338267	.	-	.	Ledus.S3G042000
Ledus.S3	AUGUSTUS	transcript	3337686	3338267	.	-	.	transcript_id "Ledus.S3G042000.t1"; gene_id "Ledus.S3G042000"
Ledus.S3	AUGUSTUS	stop_codon	3337683	3337685	.	-	0	transcript_id "Ledus.S3G042000.t1"; gene_id "Ledus.S3G042000"
Ledus.S3	AUGUSTUS	CDS	3337686	3337879	1	-	2	transcript_id "Ledus.S3G042000.t1"; gene_id "Ledus.S3G042000"
Ledus.S3	AUGUSTUS	exon	3337686	3337879	.	-	.	transcript_id "Ledus.S3G042000.t1"; gene_id "Ledus.S3G042000"
Ledus.S3	AUGUSTUS	intron	3337880	3337972	.	-	.	transcript_id "Ledus.S3G042000.t1"; gene_id "Ledus.S3G042000"
Ledus.S3	AUGUSTUS	CDS	3337973	3338267	0.72	-	0	transcript_id "Ledus.S3G042000.t1"; gene_id "Ledus.S3G042000"
Ledus.S3	AUGUSTUS	exon	3337973	3338267	.	-	.	transcript_id "Ledus.S3G042000.t1"; gene_id "Ledus.S3G042000"
Ledus.S3	AUGUSTUS	start_codon	3338265	3338267	.	-	0	transcript_id "Ledus.S3G042000.t1"; gene_id "Ledus.S3G042000"
# This transcript jg10213.t2 is derived from g11243.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10214.t1 is derived from g11244.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13628208	13629161	.	-	.	Ledus.S3G169100
Ledus.S3	AUGUSTUS	transcript	13628208	13629161	.	-	.	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	stop_codon	13628205	13628207	.	-	0	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	CDS	13628208	13628212	0.99	-	2	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	exon	13628208	13628212	.	-	.	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	intron	13628213	13628413	.	-	.	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	CDS	13628414	13628493	0.99	-	1	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	exon	13628414	13628493	.	-	.	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	intron	13628494	13628590	.	-	.	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	CDS	13628591	13628718	0.58	-	0	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	exon	13628591	13628718	.	-	.	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	intron	13628719	13628810	.	-	.	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	CDS	13628811	13628890	0.37	-	2	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	exon	13628811	13628890	.	-	.	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	intron	13628891	13628995	.	-	.	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	CDS	13628996	13629161	0.41	-	0	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	exon	13628996	13629161	.	-	.	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
Ledus.S3	AUGUSTUS	start_codon	13629159	13629161	.	-	0	transcript_id "Ledus.S3G169100.t1"; gene_id "Ledus.S3G169100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8314.t1 is derived from g12986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10692284	10694945	.	-	.	Ledus.S5G109200
Ledus.S5	AUGUSTUS	transcript	10692284	10694945	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	stop_codon	10692281	10692283	.	-	0	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	CDS	10692284	10692490	0.99	-	0	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	exon	10692284	10692490	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	intron	10692491	10692610	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	CDS	10692611	10692712	0.98	-	0	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	exon	10692611	10692712	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	intron	10692713	10692815	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	CDS	10692816	10693013	1	-	0	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	exon	10692816	10693013	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	intron	10693014	10693118	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	CDS	10693119	10693244	0.94	-	0	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	exon	10693119	10693244	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	intron	10693245	10693346	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	CDS	10693347	10693628	0.99	-	0	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	exon	10693347	10693628	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	intron	10693629	10693742	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	CDS	10693743	10693916	1	-	0	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	exon	10693743	10693916	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	intron	10693917	10694071	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	CDS	10694072	10694233	1	-	0	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	exon	10694072	10694233	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	intron	10694234	10694412	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	CDS	10694413	10694476	1	-	1	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	exon	10694413	10694476	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	intron	10694477	10694592	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	CDS	10694593	10694945	1	-	0	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	exon	10694593	10694945	.	-	.	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
Ledus.S5	AUGUSTUS	start_codon	10694943	10694945	.	-	0	transcript_id "Ledus.S5G109200.t1"; gene_id "Ledus.S5G109200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4739.t1 is derived from g2177.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19436328	19440690	.	-	.	Ledus.S1G216000
Ledus.S1	AUGUSTUS	transcript	19436328	19440690	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	stop_codon	19436325	19436327	.	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19436328	19436489	0.96	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19436328	19436489	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19436490	19436587	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19436588	19436692	1	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19436588	19436692	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19436693	19436774	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19436775	19436879	1	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19436775	19436879	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19436880	19436983	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19436984	19437065	1	-	1	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19436984	19437065	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19437066	19437146	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19437147	19437346	1	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19437147	19437346	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19437347	19437451	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19437452	19437613	0.98	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19437452	19437613	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19437614	19437736	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19437737	19437846	1	-	2	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19437737	19437846	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19437847	19437991	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19437992	19438133	0.99	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19437992	19438133	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19438134	19438249	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19438250	19438396	1	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19438250	19438396	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19438397	19438475	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19438476	19438550	1	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19438476	19438550	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19438551	19438644	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19438645	19438854	1	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19438645	19438854	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19438855	19438942	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19438943	19439146	1	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19438943	19439146	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19439147	19439282	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19439283	19439402	1	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19439283	19439402	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19439403	19439495	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19439496	19439605	1	-	2	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19439496	19439605	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19439606	19439780	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19439781	19439925	0.97	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19439781	19439925	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19439926	19440043	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19440044	19440352	0.55	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19440044	19440352	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19440353	19440437	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19440438	19440461	0.69	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19440438	19440461	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	intron	19440462	19440684	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	CDS	19440685	19440690	0.7	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	exon	19440685	19440690	.	-	.	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
Ledus.S1	AUGUSTUS	start_codon	19440688	19440690	.	-	0	transcript_id "Ledus.S1G216000.t1"; gene_id "Ledus.S1G216000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg12866.t1 is derived from g4439.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	97810	100133	.	-	.	Ledus.C10G000900
Ledus.C10	AUGUSTUS	transcript	97810	100133	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	stop_codon	97807	97809	.	-	0	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	97810	97905	1	-	0	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	97810	97905	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	97906	98081	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98082	98183	1	-	0	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98082	98183	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	98184	98294	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98295	98408	0.97	-	0	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98295	98408	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	98409	98524	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98525	98623	1	-	0	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98525	98623	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	98624	98707	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98708	98760	1	-	2	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98708	98760	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	98761	98969	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98970	99027	1	-	0	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98970	99027	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99028	99133	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99134	99222	1	-	2	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99134	99222	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99223	99376	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99377	99454	0.98	-	2	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99377	99454	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99455	99557	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99558	99586	0.93	-	1	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99558	99586	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99587	99683	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99684	99751	1	-	0	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99684	99751	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99752	99854	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99855	100133	0.69	-	0	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99855	100133	.	-	.	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	start_codon	100131	100133	.	-	0	transcript_id "Ledus.C10G000900.t1"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	transcript	97810	100133	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	stop_codon	97807	97809	.	-	0	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	97810	97905	0.99	-	0	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	97810	97905	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	97906	98081	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98082	98183	1	-	0	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98082	98183	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	98184	98524	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98525	98623	1	-	0	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98525	98623	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	98624	98707	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98708	98760	1	-	2	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98708	98760	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	98761	98969	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98970	99027	1	-	0	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98970	99027	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99028	99133	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99134	99222	0.96	-	2	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99134	99222	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99223	99376	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99377	99510	1	-	1	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99377	99510	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99511	99683	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99684	99751	1	-	0	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99684	99751	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99752	99854	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99855	100133	0.61	-	0	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99855	100133	.	-	.	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	start_codon	100131	100133	.	-	0	transcript_id "Ledus.C10G000900.t2"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	transcript	97810	100133	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	stop_codon	97807	97809	.	-	0	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	97810	97905	0.98	-	0	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	97810	97905	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	97906	98081	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98082	98183	1	-	0	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98082	98183	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	98184	98524	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98525	98623	1	-	0	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98525	98623	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	98624	98707	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98708	98760	0.87	-	2	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98708	98760	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	98761	98959	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	98960	99014	0.8	-	0	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	98960	99014	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99015	99133	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99134	99222	0.82	-	2	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99134	99222	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99223	99376	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99377	99454	0.94	-	2	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99377	99454	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99455	99557	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99558	99586	0.85	-	1	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99558	99586	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99587	99683	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99684	99751	0.99	-	0	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99684	99751	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	intron	99752	99854	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	CDS	99855	100133	0.77	-	0	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	exon	99855	100133	.	-	.	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
Ledus.C10	AUGUSTUS	start_codon	100131	100133	.	-	0	transcript_id "Ledus.C10G000900.t3"; gene_id "Ledus.C10G000900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10102.t1 is derived from g11132.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12674758	12675039	.	-	.	Ledus.S3G157900
Ledus.S3	AUGUSTUS	transcript	12674758	12675039	.	-	.	transcript_id "Ledus.S3G157900.t1"; gene_id "Ledus.S3G157900"
Ledus.S3	AUGUSTUS	stop_codon	12674755	12674757	.	-	0	transcript_id "Ledus.S3G157900.t1"; gene_id "Ledus.S3G157900"
Ledus.S3	AUGUSTUS	CDS	12674758	12675039	0.85	-	0	transcript_id "Ledus.S3G157900.t1"; gene_id "Ledus.S3G157900"
Ledus.S3	AUGUSTUS	exon	12674758	12675039	.	-	.	transcript_id "Ledus.S3G157900.t1"; gene_id "Ledus.S3G157900"
Ledus.S3	AUGUSTUS	start_codon	12675037	12675039	.	-	0	transcript_id "Ledus.S3G157900.t1"; gene_id "Ledus.S3G157900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7340.t1 is derived from g12011.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	1262083	1265200	.	-	.	Ledus.S5G011800
Ledus.S5	AUGUSTUS	transcript	1262083	1265200	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	stop_codon	1262080	1262082	.	-	0	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	CDS	1262083	1262904	0.92	-	0	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	exon	1262083	1262904	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	intron	1262905	1263040	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	CDS	1263041	1263204	1	-	2	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	exon	1263041	1263204	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	intron	1263205	1263388	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	CDS	1263389	1263470	1	-	0	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	exon	1263389	1263470	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	intron	1263471	1263618	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	CDS	1263619	1263742	1	-	1	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	exon	1263619	1263742	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	intron	1263743	1263850	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	CDS	1263851	1263927	0.94	-	0	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	exon	1263851	1263927	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	intron	1263928	1264038	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	CDS	1264039	1264083	0.9	-	0	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	exon	1264039	1264083	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	intron	1264084	1264211	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	CDS	1264212	1264280	1	-	0	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	exon	1264212	1264280	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	intron	1264281	1264387	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	CDS	1264388	1264512	1	-	2	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	exon	1264388	1264512	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	intron	1264513	1264694	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	CDS	1264695	1264742	1	-	2	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	exon	1264695	1264742	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	intron	1264743	1265097	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	CDS	1265098	1265200	1	-	0	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	exon	1265098	1265200	.	-	.	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
Ledus.S5	AUGUSTUS	start_codon	1265198	1265200	.	-	0	transcript_id "Ledus.S5G011800.t1"; gene_id "Ledus.S5G011800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12345.t1 is derived from g5966.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11329540	11331165	.	+	.	Ledus.S4G150100
Ledus.S4	AUGUSTUS	transcript	11329540	11331165	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	start_codon	11329540	11329542	.	+	0	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	CDS	11329540	11329554	0.39	+	0	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	exon	11329540	11329554	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	intron	11329555	11329641	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	CDS	11329642	11329786	0.36	+	0	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	exon	11329642	11329786	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	intron	11329787	11329868	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	CDS	11329869	11329965	0.86	+	2	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	exon	11329869	11329965	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	intron	11329966	11330137	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	CDS	11330138	11330348	0.39	+	1	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	exon	11330138	11330348	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	intron	11330349	11330724	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	CDS	11330725	11330857	0.93	+	0	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	exon	11330725	11330857	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	intron	11330858	11330943	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	CDS	11330944	11331035	0.51	+	2	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	exon	11330944	11331035	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	intron	11331036	11331162	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	CDS	11331163	11331165	0.92	+	0	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	exon	11331163	11331165	.	+	.	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
Ledus.S4	AUGUSTUS	stop_codon	11331166	11331168	.	+	0	transcript_id "Ledus.S4G150100.t1"; gene_id "Ledus.S4G150100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7894.t1 is derived from g12565.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7711732	7714255	.	+	.	Ledus.S5G067200
Ledus.S5	AUGUSTUS	transcript	7711732	7714255	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	start_codon	7711732	7711734	.	+	0	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	CDS	7711732	7711811	0.55	+	0	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	exon	7711732	7711811	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	intron	7711812	7712050	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	CDS	7712051	7712104	0.96	+	1	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	exon	7712051	7712104	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	intron	7712105	7712172	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	CDS	7712173	7712263	0.97	+	1	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	exon	7712173	7712263	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	intron	7712264	7712335	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	CDS	7712336	7712629	0.66	+	0	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	exon	7712336	7712629	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	intron	7712630	7712730	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	CDS	7712731	7712853	1	+	0	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	exon	7712731	7712853	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	intron	7712854	7712997	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	CDS	7712998	7713503	0.84	+	0	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	exon	7712998	7713503	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	intron	7713504	7713615	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	CDS	7713616	7713937	0.67	+	1	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	exon	7713616	7713937	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	intron	7713938	7714054	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	CDS	7714055	7714255	0.62	+	0	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	exon	7714055	7714255	.	+	.	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
Ledus.S5	AUGUSTUS	stop_codon	7714256	7714258	.	+	0	transcript_id "Ledus.S5G067200.t1"; gene_id "Ledus.S5G067200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6275.t1 is derived from g3718.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30086845	30087156	.	+	.	Ledus.S1G369600
Ledus.S1	AUGUSTUS	transcript	30086845	30087156	.	+	.	transcript_id "Ledus.S1G369600.t1"; gene_id "Ledus.S1G369600"
Ledus.S1	AUGUSTUS	start_codon	30086845	30086847	.	+	0	transcript_id "Ledus.S1G369600.t1"; gene_id "Ledus.S1G369600"
Ledus.S1	AUGUSTUS	CDS	30086845	30087156	0.96	+	0	transcript_id "Ledus.S1G369600.t1"; gene_id "Ledus.S1G369600"
Ledus.S1	AUGUSTUS	exon	30086845	30087156	.	+	.	transcript_id "Ledus.S1G369600.t1"; gene_id "Ledus.S1G369600"
Ledus.S1	AUGUSTUS	stop_codon	30087157	30087159	.	+	0	transcript_id "Ledus.S1G369600.t1"; gene_id "Ledus.S1G369600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7437.t1 is derived from g12108.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2677525	2679540	.	-	.	Ledus.S5G021500
Ledus.S5	AUGUSTUS	transcript	2677525	2679540	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	stop_codon	2677522	2677524	.	-	0	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	CDS	2677525	2677540	0.94	-	1	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	exon	2677525	2677540	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	intron	2677541	2677767	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	CDS	2677768	2678167	0.2	-	2	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	exon	2677768	2678167	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	intron	2678168	2678353	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	CDS	2678354	2678364	0.25	-	1	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	exon	2678354	2678364	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	intron	2678365	2678526	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	CDS	2678527	2678566	0.71	-	2	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	exon	2678527	2678566	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	intron	2678567	2678723	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	CDS	2678724	2678796	0.7	-	0	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	exon	2678724	2678796	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	intron	2678797	2678892	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	CDS	2678893	2678967	1	-	0	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	exon	2678893	2678967	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	intron	2678968	2679058	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	CDS	2679059	2679115	1	-	0	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	exon	2679059	2679115	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	intron	2679116	2679203	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	CDS	2679204	2679326	1	-	0	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	exon	2679204	2679326	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	intron	2679327	2679417	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	CDS	2679418	2679540	0.66	-	0	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	exon	2679418	2679540	.	-	.	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
Ledus.S5	AUGUSTUS	start_codon	2679538	2679540	.	-	0	transcript_id "Ledus.S5G021500.t1"; gene_id "Ledus.S5G021500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11685.t1 is derived from g5304.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5974495	5976100	.	+	.	Ledus.S4G084100
Ledus.S4	AUGUSTUS	transcript	5974495	5976100	.	+	.	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	start_codon	5974495	5974497	.	+	0	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	CDS	5974495	5974750	1	+	0	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	exon	5974495	5974750	.	+	.	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	intron	5974751	5974837	.	+	.	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	CDS	5974838	5975061	0.93	+	2	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	exon	5974838	5975061	.	+	.	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	intron	5975062	5975150	.	+	.	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	CDS	5975151	5975637	1	+	0	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	exon	5975151	5975637	.	+	.	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	intron	5975638	5975732	.	+	.	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	CDS	5975733	5976100	0.81	+	2	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	exon	5975733	5976100	.	+	.	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
Ledus.S4	AUGUSTUS	stop_codon	5976101	5976103	.	+	0	transcript_id "Ledus.S4G084100.t1"; gene_id "Ledus.S4G084100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4642.t1 is derived from g2079.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18593058	18594547	.	-	.	Ledus.S1G206300
Ledus.S1	AUGUSTUS	transcript	18593058	18594547	.	-	.	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	stop_codon	18593055	18593057	.	-	0	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	CDS	18593058	18593246	0.91	-	0	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	exon	18593058	18593246	.	-	.	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	intron	18593247	18593318	.	-	.	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	CDS	18593319	18593438	0.95	-	0	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	exon	18593319	18593438	.	-	.	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	intron	18593439	18593527	.	-	.	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	CDS	18593528	18593686	0.99	-	0	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	exon	18593528	18593686	.	-	.	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	intron	18593687	18593769	.	-	.	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	CDS	18593770	18593986	0.99	-	1	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	exon	18593770	18593986	.	-	.	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	intron	18593987	18594080	.	-	.	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	CDS	18594081	18594117	0.7	-	2	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	exon	18594081	18594117	.	-	.	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	intron	18594118	18594450	.	-	.	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	CDS	18594451	18594547	0.57	-	0	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	exon	18594451	18594547	.	-	.	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
Ledus.S1	AUGUSTUS	start_codon	18594545	18594547	.	-	0	transcript_id "Ledus.S1G206300.t1"; gene_id "Ledus.S1G206300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6683.t1 is derived from g4126.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33214632	33215141	.	+	.	Ledus.S1G410400
Ledus.S1	AUGUSTUS	transcript	33214632	33215141	.	+	.	transcript_id "Ledus.S1G410400.t1"; gene_id "Ledus.S1G410400"
Ledus.S1	AUGUSTUS	start_codon	33214632	33214634	.	+	0	transcript_id "Ledus.S1G410400.t1"; gene_id "Ledus.S1G410400"
Ledus.S1	AUGUSTUS	CDS	33214632	33215141	0.73	+	0	transcript_id "Ledus.S1G410400.t1"; gene_id "Ledus.S1G410400"
Ledus.S1	AUGUSTUS	exon	33214632	33215141	.	+	.	transcript_id "Ledus.S1G410400.t1"; gene_id "Ledus.S1G410400"
Ledus.S1	AUGUSTUS	stop_codon	33215142	33215144	.	+	0	transcript_id "Ledus.S1G410400.t1"; gene_id "Ledus.S1G410400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6899.t1 is derived from g4343.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35059362	35060684	.	-	.	Ledus.S1G432000
Ledus.S1	AUGUSTUS	transcript	35059362	35060684	.	-	.	transcript_id "Ledus.S1G432000.t1"; gene_id "Ledus.S1G432000"
Ledus.S1	AUGUSTUS	stop_codon	35059359	35059361	.	-	0	transcript_id "Ledus.S1G432000.t1"; gene_id "Ledus.S1G432000"
Ledus.S1	AUGUSTUS	CDS	35059362	35059874	1	-	0	transcript_id "Ledus.S1G432000.t1"; gene_id "Ledus.S1G432000"
Ledus.S1	AUGUSTUS	exon	35059362	35059874	.	-	.	transcript_id "Ledus.S1G432000.t1"; gene_id "Ledus.S1G432000"
Ledus.S1	AUGUSTUS	intron	35059875	35060012	.	-	.	transcript_id "Ledus.S1G432000.t1"; gene_id "Ledus.S1G432000"
Ledus.S1	AUGUSTUS	CDS	35060013	35060132	1	-	0	transcript_id "Ledus.S1G432000.t1"; gene_id "Ledus.S1G432000"
Ledus.S1	AUGUSTUS	exon	35060013	35060132	.	-	.	transcript_id "Ledus.S1G432000.t1"; gene_id "Ledus.S1G432000"
Ledus.S1	AUGUSTUS	intron	35060133	35060228	.	-	.	transcript_id "Ledus.S1G432000.t1"; gene_id "Ledus.S1G432000"
Ledus.S1	AUGUSTUS	CDS	35060229	35060684	0.7	-	0	transcript_id "Ledus.S1G432000.t1"; gene_id "Ledus.S1G432000"
Ledus.S1	AUGUSTUS	exon	35060229	35060684	.	-	.	transcript_id "Ledus.S1G432000.t1"; gene_id "Ledus.S1G432000"
Ledus.S1	AUGUSTUS	start_codon	35060682	35060684	.	-	0	transcript_id "Ledus.S1G432000.t1"; gene_id "Ledus.S1G432000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4946.t1 is derived from g2384.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20830139	20831989	.	-	.	Ledus.S1G236700
Ledus.S1	AUGUSTUS	transcript	20830139	20831989	.	-	.	transcript_id "Ledus.S1G236700.t1"; gene_id "Ledus.S1G236700"
Ledus.S1	AUGUSTUS	stop_codon	20830136	20830138	.	-	0	transcript_id "Ledus.S1G236700.t1"; gene_id "Ledus.S1G236700"
Ledus.S1	AUGUSTUS	CDS	20830139	20831989	0.92	-	0	transcript_id "Ledus.S1G236700.t1"; gene_id "Ledus.S1G236700"
Ledus.S1	AUGUSTUS	exon	20830139	20831989	.	-	.	transcript_id "Ledus.S1G236700.t1"; gene_id "Ledus.S1G236700"
Ledus.S1	AUGUSTUS	start_codon	20831987	20831989	.	-	0	transcript_id "Ledus.S1G236700.t1"; gene_id "Ledus.S1G236700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11607.t1 is derived from g5225.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5508603	5511451	.	+	.	Ledus.S4G076300
Ledus.S4	AUGUSTUS	transcript	5508603	5511451	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	start_codon	5508603	5508605	.	+	0	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	CDS	5508603	5508793	0.74	+	0	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	exon	5508603	5508793	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	intron	5508794	5508978	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	CDS	5508979	5509088	1	+	1	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	exon	5508979	5509088	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	intron	5509089	5509704	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	CDS	5509705	5509831	1	+	2	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	exon	5509705	5509831	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	intron	5509832	5510210	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	CDS	5510211	5510668	1	+	1	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	exon	5510211	5510668	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	intron	5510669	5510771	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	CDS	5510772	5510935	0.98	+	2	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	exon	5510772	5510935	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	intron	5510936	5511128	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	CDS	5511129	5511182	1	+	0	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	exon	5511129	5511182	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	intron	5511183	5511279	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	CDS	5511280	5511334	1	+	0	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	exon	5511280	5511334	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	intron	5511335	5511425	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	CDS	5511426	5511451	1	+	2	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	exon	5511426	5511451	.	+	.	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
Ledus.S4	AUGUSTUS	stop_codon	5511452	5511454	.	+	0	transcript_id "Ledus.S4G076300.t1"; gene_id "Ledus.S4G076300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1712.t1 is derived from g8573.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12075098	12075509	.	-	.	Ledus.S2G159400
Ledus.S2	AUGUSTUS	transcript	12075098	12075509	.	-	.	transcript_id "Ledus.S2G159400.t1"; gene_id "Ledus.S2G159400"
Ledus.S2	AUGUSTUS	stop_codon	12075095	12075097	.	-	0	transcript_id "Ledus.S2G159400.t1"; gene_id "Ledus.S2G159400"
Ledus.S2	AUGUSTUS	CDS	12075098	12075187	0.83	-	0	transcript_id "Ledus.S2G159400.t1"; gene_id "Ledus.S2G159400"
Ledus.S2	AUGUSTUS	exon	12075098	12075187	.	-	.	transcript_id "Ledus.S2G159400.t1"; gene_id "Ledus.S2G159400"
Ledus.S2	AUGUSTUS	intron	12075188	12075293	.	-	.	transcript_id "Ledus.S2G159400.t1"; gene_id "Ledus.S2G159400"
Ledus.S2	AUGUSTUS	CDS	12075294	12075509	0.54	-	0	transcript_id "Ledus.S2G159400.t1"; gene_id "Ledus.S2G159400"
Ledus.S2	AUGUSTUS	exon	12075294	12075509	.	-	.	transcript_id "Ledus.S2G159400.t1"; gene_id "Ledus.S2G159400"
Ledus.S2	AUGUSTUS	start_codon	12075507	12075509	.	-	0	transcript_id "Ledus.S2G159400.t1"; gene_id "Ledus.S2G159400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11072.t1 is derived from g4690.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1606246	1608290	.	+	.	Ledus.S4G022800
Ledus.S4	AUGUSTUS	transcript	1606246	1608290	.	+	.	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	start_codon	1606246	1606248	.	+	0	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	CDS	1606246	1606348	0.83	+	0	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	exon	1606246	1606348	.	+	.	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	intron	1606349	1606578	.	+	.	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	CDS	1606579	1606698	0.77	+	2	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	exon	1606579	1606698	.	+	.	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	intron	1606699	1606910	.	+	.	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	CDS	1606911	1606948	0.91	+	2	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	exon	1606911	1606948	.	+	.	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	intron	1606949	1607041	.	+	.	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	CDS	1607042	1607766	0.96	+	0	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	exon	1607042	1607766	.	+	.	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	intron	1607767	1607869	.	+	.	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	CDS	1607870	1608290	0.88	+	1	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	exon	1607870	1608290	.	+	.	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
Ledus.S4	AUGUSTUS	stop_codon	1608291	1608293	.	+	0	transcript_id "Ledus.S4G022800.t1"; gene_id "Ledus.S4G022800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10873.t1 is derived from g4491.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	214400	217345	.	+	.	Ledus.S4G002900
Ledus.S4	AUGUSTUS	transcript	214400	217345	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	start_codon	214400	214402	.	+	0	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	214400	214511	0.99	+	0	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	214400	214511	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	214512	214605	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	214606	214754	1	+	2	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	214606	214754	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	214755	214842	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	214843	214977	1	+	0	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	214843	214977	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	214978	215114	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	215115	215169	1	+	0	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	215115	215169	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	215170	215258	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	215259	215377	1	+	2	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	215259	215377	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	215378	215471	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	215472	215560	1	+	0	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	215472	215560	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	215561	215680	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	215681	215762	0.94	+	1	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	215681	215762	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	215763	215873	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	215874	215978	0.57	+	0	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	215874	215978	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	215979	216181	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	216182	216272	1	+	0	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	216182	216272	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	216273	216381	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	216382	216504	0.99	+	2	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	216382	216504	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	216505	216648	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	216649	216755	0.84	+	2	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	216649	216755	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	216756	216876	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	216877	216946	1	+	0	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	216877	216946	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	216947	217034	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	217035	217098	1	+	2	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	217035	217098	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	intron	217099	217188	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	CDS	217189	217345	0.4	+	1	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	exon	217189	217345	.	+	.	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
Ledus.S4	AUGUSTUS	stop_codon	217346	217348	.	+	0	transcript_id "Ledus.S4G002900.t1"; gene_id "Ledus.S4G002900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6495.t1 is derived from g3938.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31623135	31626087	.	-	.	Ledus.S1G391600
Ledus.S1	AUGUSTUS	transcript	31623135	31626087	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	stop_codon	31623132	31623134	.	-	0	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31623135	31623204	1	-	1	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31623135	31623204	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	intron	31623205	31623293	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31623294	31623391	1	-	0	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31623294	31623391	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	intron	31623392	31623472	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31623473	31623538	1	-	0	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31623473	31623538	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	intron	31623539	31623630	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31623631	31623684	1	-	0	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31623631	31623684	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	intron	31623685	31623785	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31623786	31623875	0.84	-	0	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31623786	31623875	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	intron	31623876	31623996	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31623997	31624045	0.59	-	1	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31623997	31624045	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	intron	31624046	31624147	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31624148	31624269	1	-	0	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31624148	31624269	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	intron	31624270	31624543	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31624544	31624642	1	-	0	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31624544	31624642	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	intron	31624643	31624763	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31624764	31624799	0.54	-	0	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31624764	31624799	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	intron	31624800	31624962	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31624963	31625053	1	-	1	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31624963	31625053	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	intron	31625054	31625131	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31625132	31625321	1	-	2	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31625132	31625321	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	intron	31625322	31625412	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31625413	31625500	1	-	0	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31625413	31625500	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	intron	31625501	31625988	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	CDS	31625989	31626087	0.33	-	0	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	exon	31625989	31626087	.	-	.	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
Ledus.S1	AUGUSTUS	start_codon	31626085	31626087	.	-	0	transcript_id "Ledus.S1G391600.t1"; gene_id "Ledus.S1G391600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11226.t1 is derived from g4844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2817884	2819035	.	-	.	Ledus.S4G038200
Ledus.S4	AUGUSTUS	transcript	2817884	2819035	.	-	.	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	stop_codon	2817881	2817883	.	-	0	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	CDS	2817884	2817967	0.95	-	0	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	exon	2817884	2817967	.	-	.	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	intron	2817968	2818056	.	-	.	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	CDS	2818057	2818150	1	-	1	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	exon	2818057	2818150	.	-	.	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	intron	2818151	2818249	.	-	.	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	CDS	2818250	2818311	1	-	0	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	exon	2818250	2818311	.	-	.	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	intron	2818312	2818398	.	-	.	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	CDS	2818399	2818452	1	-	0	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	exon	2818399	2818452	.	-	.	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	intron	2818453	2818606	.	-	.	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	CDS	2818607	2818854	1	-	2	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	exon	2818607	2818854	.	-	.	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	intron	2818855	2818989	.	-	.	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	CDS	2818990	2819035	0.95	-	0	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	exon	2818990	2819035	.	-	.	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
Ledus.S4	AUGUSTUS	start_codon	2819033	2819035	.	-	0	transcript_id "Ledus.S4G038200.t1"; gene_id "Ledus.S4G038200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1981.t1 is derived from g8844.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14013037	14013769	.	-	.	Ledus.S2G186300
Ledus.S2	AUGUSTUS	transcript	14013037	14013769	.	-	.	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	stop_codon	14013034	14013036	.	-	0	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	CDS	14013037	14013042	0.97	-	0	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	exon	14013037	14013042	.	-	.	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	intron	14013043	14013114	.	-	.	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	CDS	14013115	14013162	0.97	-	0	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	exon	14013115	14013162	.	-	.	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	intron	14013163	14013307	.	-	.	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	CDS	14013308	14013351	0.74	-	2	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	exon	14013308	14013351	.	-	.	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	intron	14013352	14013475	.	-	.	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	CDS	14013476	14013553	0.33	-	2	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	exon	14013476	14013553	.	-	.	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	intron	14013554	14013714	.	-	.	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	CDS	14013715	14013769	0.43	-	0	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	exon	14013715	14013769	.	-	.	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
Ledus.S2	AUGUSTUS	start_codon	14013767	14013769	.	-	0	transcript_id "Ledus.S2G186300.t1"; gene_id "Ledus.S2G186300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg825.t1 is derived from g7686.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	5325873	5326220	.	-	.	Ledus.S2G070700
Ledus.S2	AUGUSTUS	transcript	5325873	5326220	.	-	.	transcript_id "Ledus.S2G070700.t1"; gene_id "Ledus.S2G070700"
Ledus.S2	AUGUSTUS	stop_codon	5325870	5325872	.	-	0	transcript_id "Ledus.S2G070700.t1"; gene_id "Ledus.S2G070700"
Ledus.S2	AUGUSTUS	CDS	5325873	5326220	0.53	-	0	transcript_id "Ledus.S2G070700.t1"; gene_id "Ledus.S2G070700"
Ledus.S2	AUGUSTUS	exon	5325873	5326220	.	-	.	transcript_id "Ledus.S2G070700.t1"; gene_id "Ledus.S2G070700"
Ledus.S2	AUGUSTUS	start_codon	5326218	5326220	.	-	0	transcript_id "Ledus.S2G070700.t1"; gene_id "Ledus.S2G070700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9187.t1 is derived from g10217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5290578	5291688	.	-	.	Ledus.S3G066400
Ledus.S3	AUGUSTUS	transcript	5290578	5291688	.	-	.	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	stop_codon	5290575	5290577	.	-	0	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	CDS	5290578	5290826	0.99	-	0	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	exon	5290578	5290826	.	-	.	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	intron	5290827	5290915	.	-	.	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	CDS	5290916	5291280	0.8	-	2	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	exon	5290916	5291280	.	-	.	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	intron	5291281	5291371	.	-	.	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	CDS	5291372	5291476	1	-	2	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	exon	5291372	5291476	.	-	.	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	intron	5291477	5291570	.	-	.	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	CDS	5291571	5291688	0.88	-	0	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	exon	5291571	5291688	.	-	.	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
Ledus.S3	AUGUSTUS	start_codon	5291686	5291688	.	-	0	transcript_id "Ledus.S3G066400.t1"; gene_id "Ledus.S3G066400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6378.t1 is derived from g3821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30906987	30907327	.	-	.	Ledus.S1G379900
Ledus.S1	AUGUSTUS	transcript	30906987	30907327	.	-	.	transcript_id "Ledus.S1G379900.t1"; gene_id "Ledus.S1G379900"
Ledus.S1	AUGUSTUS	stop_codon	30906984	30906986	.	-	0	transcript_id "Ledus.S1G379900.t1"; gene_id "Ledus.S1G379900"
Ledus.S1	AUGUSTUS	CDS	30906987	30907042	0.46	-	2	transcript_id "Ledus.S1G379900.t1"; gene_id "Ledus.S1G379900"
Ledus.S1	AUGUSTUS	exon	30906987	30907042	.	-	.	transcript_id "Ledus.S1G379900.t1"; gene_id "Ledus.S1G379900"
Ledus.S1	AUGUSTUS	intron	30907043	30907134	.	-	.	transcript_id "Ledus.S1G379900.t1"; gene_id "Ledus.S1G379900"
Ledus.S1	AUGUSTUS	CDS	30907135	30907327	0.41	-	0	transcript_id "Ledus.S1G379900.t1"; gene_id "Ledus.S1G379900"
Ledus.S1	AUGUSTUS	exon	30907135	30907327	.	-	.	transcript_id "Ledus.S1G379900.t1"; gene_id "Ledus.S1G379900"
Ledus.S1	AUGUSTUS	start_codon	30907325	30907327	.	-	0	transcript_id "Ledus.S1G379900.t1"; gene_id "Ledus.S1G379900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3767.t1 is derived from g1203.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11793824	11794159	.	-	.	Ledus.S1G118800
Ledus.S1	AUGUSTUS	transcript	11793824	11794159	.	-	.	transcript_id "Ledus.S1G118800.t1"; gene_id "Ledus.S1G118800"
Ledus.S1	AUGUSTUS	stop_codon	11793821	11793823	.	-	0	transcript_id "Ledus.S1G118800.t1"; gene_id "Ledus.S1G118800"
Ledus.S1	AUGUSTUS	CDS	11793824	11794159	0.44	-	0	transcript_id "Ledus.S1G118800.t1"; gene_id "Ledus.S1G118800"
Ledus.S1	AUGUSTUS	exon	11793824	11794159	.	-	.	transcript_id "Ledus.S1G118800.t1"; gene_id "Ledus.S1G118800"
Ledus.S1	AUGUSTUS	start_codon	11794157	11794159	.	-	0	transcript_id "Ledus.S1G118800.t1"; gene_id "Ledus.S1G118800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6795.t1 is derived from g4239.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34240641	34243601	.	+	.	Ledus.S1G421600
Ledus.S1	AUGUSTUS	transcript	34240641	34243601	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	start_codon	34240641	34240643	.	+	0	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34240641	34240646	0.67	+	0	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34240641	34240646	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	intron	34240647	34240779	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34240780	34241073	0.73	+	0	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34240780	34241073	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	intron	34241074	34241187	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34241188	34241246	1	+	0	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34241188	34241246	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	intron	34241247	34241389	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34241390	34241514	1	+	1	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34241390	34241514	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	intron	34241515	34241645	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34241646	34241740	1	+	2	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34241646	34241740	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	intron	34241741	34241831	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34241832	34242037	1	+	0	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34241832	34242037	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	intron	34242038	34242219	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34242220	34242390	1	+	1	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34242220	34242390	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	intron	34242391	34242509	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34242510	34242716	1	+	1	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34242510	34242716	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	intron	34242717	34242802	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34242803	34242956	1	+	1	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34242803	34242956	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	intron	34242957	34243062	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34243063	34243126	1	+	0	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34243063	34243126	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	intron	34243127	34243212	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34243213	34243296	0.99	+	2	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34243213	34243296	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	intron	34243297	34243444	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34243445	34243509	0.85	+	2	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34243445	34243509	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	intron	34243510	34243589	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	CDS	34243590	34243601	1	+	0	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	exon	34243590	34243601	.	+	.	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
Ledus.S1	AUGUSTUS	stop_codon	34243602	34243604	.	+	0	transcript_id "Ledus.S1G421600.t1"; gene_id "Ledus.S1G421600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2312.t1 is derived from g9175.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17129990	17132484	.	-	.	Ledus.S2G219400
Ledus.S2	AUGUSTUS	transcript	17129990	17132484	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	stop_codon	17129987	17129989	.	-	0	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	CDS	17129990	17130025	0.99	-	0	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	exon	17129990	17130025	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	intron	17130026	17130237	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	CDS	17130238	17130420	0.99	-	0	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	exon	17130238	17130420	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	intron	17130421	17130535	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	CDS	17130536	17130658	0.9	-	0	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	exon	17130536	17130658	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	intron	17130659	17130762	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	CDS	17130763	17130955	0.99	-	1	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	exon	17130763	17130955	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	intron	17130956	17131038	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	CDS	17131039	17131244	1	-	0	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	exon	17131039	17131244	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	intron	17131245	17131331	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	CDS	17131332	17131393	1	-	2	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	exon	17131332	17131393	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	intron	17131394	17131484	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	CDS	17131485	17131642	1	-	1	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	exon	17131485	17131642	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	intron	17131643	17131727	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	CDS	17131728	17131898	1	-	1	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	exon	17131728	17131898	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	intron	17131899	17131975	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	CDS	17131976	17132081	1	-	2	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	exon	17131976	17132081	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	intron	17132082	17132172	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	CDS	17132173	17132325	0.59	-	2	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	exon	17132173	17132325	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	intron	17132326	17132438	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	CDS	17132439	17132484	0.29	-	0	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	exon	17132439	17132484	.	-	.	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
Ledus.S2	AUGUSTUS	start_codon	17132482	17132484	.	-	0	transcript_id "Ledus.S2G219400.t1"; gene_id "Ledus.S2G219400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8846.t1 is derived from g9876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2245784	2248389	.	+	.	Ledus.S3G032300
Ledus.S3	AUGUSTUS	transcript	2245784	2248389	.	+	.	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	start_codon	2245784	2245786	.	+	0	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	CDS	2245784	2247553	0.97	+	0	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	exon	2245784	2247553	.	+	.	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	intron	2247554	2247634	.	+	.	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	CDS	2247635	2247735	1	+	0	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	exon	2247635	2247735	.	+	.	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	intron	2247736	2247824	.	+	.	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	CDS	2247825	2247845	0.55	+	1	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	exon	2247825	2247845	.	+	.	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	intron	2247846	2247911	.	+	.	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	CDS	2247912	2247917	0.77	+	1	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	exon	2247912	2247917	.	+	.	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	intron	2247918	2248193	.	+	.	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	CDS	2248194	2248209	0.44	+	1	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	exon	2248194	2248209	.	+	.	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	intron	2248210	2248386	.	+	.	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	CDS	2248387	2248389	0.44	+	0	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	exon	2248387	2248389	.	+	.	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
Ledus.S3	AUGUSTUS	stop_codon	2248390	2248392	.	+	0	transcript_id "Ledus.S3G032300.t1"; gene_id "Ledus.S3G032300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8982.t1 is derived from g10012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3666159	3666931	.	-	.	Ledus.S3G045900
Ledus.S3	AUGUSTUS	transcript	3666159	3666931	.	-	.	transcript_id "Ledus.S3G045900.t1"; gene_id "Ledus.S3G045900"
Ledus.S3	AUGUSTUS	stop_codon	3666156	3666158	.	-	0	transcript_id "Ledus.S3G045900.t1"; gene_id "Ledus.S3G045900"
Ledus.S3	AUGUSTUS	CDS	3666159	3666574	0.89	-	2	transcript_id "Ledus.S3G045900.t1"; gene_id "Ledus.S3G045900"
Ledus.S3	AUGUSTUS	exon	3666159	3666574	.	-	.	transcript_id "Ledus.S3G045900.t1"; gene_id "Ledus.S3G045900"
Ledus.S3	AUGUSTUS	intron	3666575	3666646	.	-	.	transcript_id "Ledus.S3G045900.t1"; gene_id "Ledus.S3G045900"
Ledus.S3	AUGUSTUS	CDS	3666647	3666745	0.99	-	2	transcript_id "Ledus.S3G045900.t1"; gene_id "Ledus.S3G045900"
Ledus.S3	AUGUSTUS	exon	3666647	3666745	.	-	.	transcript_id "Ledus.S3G045900.t1"; gene_id "Ledus.S3G045900"
Ledus.S3	AUGUSTUS	intron	3666746	3666834	.	-	.	transcript_id "Ledus.S3G045900.t1"; gene_id "Ledus.S3G045900"
Ledus.S3	AUGUSTUS	CDS	3666835	3666931	0.55	-	0	transcript_id "Ledus.S3G045900.t1"; gene_id "Ledus.S3G045900"
Ledus.S3	AUGUSTUS	exon	3666835	3666931	.	-	.	transcript_id "Ledus.S3G045900.t1"; gene_id "Ledus.S3G045900"
Ledus.S3	AUGUSTUS	start_codon	3666929	3666931	.	-	0	transcript_id "Ledus.S3G045900.t1"; gene_id "Ledus.S3G045900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11899.t1 is derived from g5518.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	7586822	7587243	.	-	.	Ledus.S4G105500
Ledus.S4	AUGUSTUS	transcript	7586822	7587243	.	-	.	transcript_id "Ledus.S4G105500.t1"; gene_id "Ledus.S4G105500"
Ledus.S4	AUGUSTUS	stop_codon	7586819	7586821	.	-	0	transcript_id "Ledus.S4G105500.t1"; gene_id "Ledus.S4G105500"
Ledus.S4	AUGUSTUS	CDS	7586822	7586989	0.75	-	0	transcript_id "Ledus.S4G105500.t1"; gene_id "Ledus.S4G105500"
Ledus.S4	AUGUSTUS	exon	7586822	7586989	.	-	.	transcript_id "Ledus.S4G105500.t1"; gene_id "Ledus.S4G105500"
Ledus.S4	AUGUSTUS	intron	7586990	7587183	.	-	.	transcript_id "Ledus.S4G105500.t1"; gene_id "Ledus.S4G105500"
Ledus.S4	AUGUSTUS	CDS	7587184	7587243	0.67	-	0	transcript_id "Ledus.S4G105500.t1"; gene_id "Ledus.S4G105500"
Ledus.S4	AUGUSTUS	exon	7587184	7587243	.	-	.	transcript_id "Ledus.S4G105500.t1"; gene_id "Ledus.S4G105500"
Ledus.S4	AUGUSTUS	start_codon	7587241	7587243	.	-	0	transcript_id "Ledus.S4G105500.t1"; gene_id "Ledus.S4G105500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg9297.t1 is derived from g10327.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	5859440	5866803	.	-	.	Ledus.S3G077400
Ledus.S3	AUGUSTUS	transcript	5861772	5866803	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	stop_codon	5861769	5861771	.	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5861772	5861813	0.8	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5861772	5861813	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5861814	5862090	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5862091	5862957	0.82	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5862091	5862957	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5862958	5863522	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5863523	5863651	1	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5863523	5863651	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5863652	5863739	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5863740	5863787	0.95	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5863740	5863787	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5863788	5863892	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5863893	5864012	0.93	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5863893	5864012	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5864013	5864125	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5864126	5864239	0.93	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5864126	5864239	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5864240	5864360	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5864361	5864563	1	-	2	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5864361	5864563	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5864564	5864650	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5864651	5864825	1	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5864651	5864825	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5864826	5864988	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5864989	5865143	1	-	2	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5864989	5865143	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5865144	5865224	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5865225	5865287	0.79	-	2	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5865225	5865287	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5865288	5865406	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5865407	5865617	1	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5865407	5865617	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5865618	5865703	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5865704	5865778	1	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5865704	5865778	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5865779	5865901	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5865902	5866063	0.98	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5865902	5866063	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5866064	5866200	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5866201	5866385	1	-	2	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5866201	5866385	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5866386	5866525	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5866526	5866577	1	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5866526	5866577	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5866578	5866657	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5866658	5866702	1	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5866658	5866702	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5866703	5866797	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5866798	5866803	0.96	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5866798	5866803	.	-	.	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	start_codon	5866801	5866803	.	-	0	transcript_id "Ledus.S3G077400.t1"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	transcript	5859440	5866803	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	stop_codon	5859437	5859439	.	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5859440	5859650	0.75	-	1	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5859440	5859650	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5859651	5859734	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5859735	5859870	1	-	2	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5859735	5859870	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5859871	5859964	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5859965	5860024	0.42	-	2	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5859965	5860024	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5860025	5860156	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5860157	5860259	0.7	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5860157	5860259	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5860260	5860358	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5860359	5860803	0.99	-	1	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5860359	5860803	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5860804	5861080	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5861081	5861718	0.99	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5861081	5861718	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5861719	5862090	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5862091	5862957	1	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5862091	5862957	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5862958	5863522	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5863523	5863651	1	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5863523	5863651	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5863652	5863739	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5863740	5863787	0.97	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5863740	5863787	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5863788	5863892	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5863893	5864012	0.93	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5863893	5864012	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5864013	5864125	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5864126	5864239	0.93	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5864126	5864239	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5864240	5864360	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5864361	5864563	1	-	2	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5864361	5864563	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5864564	5864650	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5864651	5864825	1	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5864651	5864825	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5864826	5864988	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5864989	5865143	1	-	2	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5864989	5865143	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5865144	5865224	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5865225	5865287	0.86	-	2	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5865225	5865287	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5865288	5865406	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5865407	5865617	1	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5865407	5865617	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5865618	5865703	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5865704	5865778	1	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5865704	5865778	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5865779	5865901	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5865902	5866063	0.94	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5865902	5866063	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5866064	5866200	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5866201	5866385	1	-	2	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5866201	5866385	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5866386	5866525	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5866526	5866577	1	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5866526	5866577	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5866578	5866657	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5866658	5866702	1	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5866658	5866702	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	intron	5866703	5866797	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	CDS	5866798	5866803	0.89	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	exon	5866798	5866803	.	-	.	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
Ledus.S3	AUGUSTUS	start_codon	5866801	5866803	.	-	0	transcript_id "Ledus.S3G077400.t2"; gene_id "Ledus.S3G077400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4486.t1 is derived from g1922.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17307769	17311997	.	-	.	Ledus.S1G190700
Ledus.S1	AUGUSTUS	transcript	17307769	17311997	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	stop_codon	17307766	17307768	.	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17307769	17307981	0.93	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17307769	17307981	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17307982	17308095	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17308096	17308272	1	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17308096	17308272	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17308273	17308364	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17308365	17308505	1	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17308365	17308505	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17308506	17308601	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17308602	17308841	1	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17308602	17308841	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17308842	17308976	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17308977	17309177	1	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17308977	17309177	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17309178	17309294	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17309295	17309567	0.9	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17309295	17309567	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17309568	17309711	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17309712	17309900	1	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17309712	17309900	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17309901	17309998	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17309999	17310199	1	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17309999	17310199	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17310200	17310363	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17310364	17310507	1	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17310364	17310507	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17310508	17310597	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17310598	17310799	0.99	-	1	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17310598	17310799	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17310800	17310912	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17310913	17311109	0.97	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17310913	17311109	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17311110	17311406	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17311407	17311438	0.78	-	2	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17311407	17311438	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17311439	17311707	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17311708	17311795	0.94	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17311708	17311795	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	intron	17311796	17311898	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	CDS	17311899	17311997	0.63	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	exon	17311899	17311997	.	-	.	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
Ledus.S1	AUGUSTUS	start_codon	17311995	17311997	.	-	0	transcript_id "Ledus.S1G190700.t1"; gene_id "Ledus.S1G190700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg280.t1 is derived from g7141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1386189	1386607	.	-	.	Ledus.S2G016200
Ledus.S2	AUGUSTUS	transcript	1386189	1386607	.	-	.	transcript_id "Ledus.S2G016200.t1"; gene_id "Ledus.S2G016200"
Ledus.S2	AUGUSTUS	stop_codon	1386186	1386188	.	-	0	transcript_id "Ledus.S2G016200.t1"; gene_id "Ledus.S2G016200"
Ledus.S2	AUGUSTUS	CDS	1386189	1386364	0.78	-	2	transcript_id "Ledus.S2G016200.t1"; gene_id "Ledus.S2G016200"
Ledus.S2	AUGUSTUS	exon	1386189	1386364	.	-	.	transcript_id "Ledus.S2G016200.t1"; gene_id "Ledus.S2G016200"
Ledus.S2	AUGUSTUS	intron	1386365	1386456	.	-	.	transcript_id "Ledus.S2G016200.t1"; gene_id "Ledus.S2G016200"
Ledus.S2	AUGUSTUS	CDS	1386457	1386607	1	-	0	transcript_id "Ledus.S2G016200.t1"; gene_id "Ledus.S2G016200"
Ledus.S2	AUGUSTUS	exon	1386457	1386607	.	-	.	transcript_id "Ledus.S2G016200.t1"; gene_id "Ledus.S2G016200"
Ledus.S2	AUGUSTUS	start_codon	1386605	1386607	.	-	0	transcript_id "Ledus.S2G016200.t1"; gene_id "Ledus.S2G016200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6942.t1 is derived from g6473.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	50055	50354	.	+	.	Ledus.C7G000300
Ledus.C7	AUGUSTUS	transcript	50055	50354	.	+	.	transcript_id "Ledus.C7G000300.t1"; gene_id "Ledus.C7G000300"
Ledus.C7	AUGUSTUS	start_codon	50055	50057	.	+	0	transcript_id "Ledus.C7G000300.t1"; gene_id "Ledus.C7G000300"
Ledus.C7	AUGUSTUS	CDS	50055	50354	0.61	+	0	transcript_id "Ledus.C7G000300.t1"; gene_id "Ledus.C7G000300"
Ledus.C7	AUGUSTUS	exon	50055	50354	.	+	.	transcript_id "Ledus.C7G000300.t1"; gene_id "Ledus.C7G000300"
Ledus.C7	AUGUSTUS	stop_codon	50355	50357	.	+	0	transcript_id "Ledus.C7G000300.t1"; gene_id "Ledus.C7G000300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10345.t1 is derived from g11375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14338494	14340151	.	+	.	Ledus.S3G182200
Ledus.S3	AUGUSTUS	transcript	14338494	14340151	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	start_codon	14338494	14338496	.	+	0	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	CDS	14338494	14338611	1	+	0	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	exon	14338494	14338611	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	intron	14338612	14338807	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	CDS	14338808	14339039	1	+	2	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	exon	14338808	14339039	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	intron	14339040	14339150	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	CDS	14339151	14339230	0.95	+	1	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	exon	14339151	14339230	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	intron	14339231	14339309	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	CDS	14339310	14339463	1	+	2	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	exon	14339310	14339463	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	intron	14339464	14339543	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	CDS	14339544	14339622	1	+	1	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	exon	14339544	14339622	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	intron	14339623	14339707	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	CDS	14339708	14339792	1	+	0	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	exon	14339708	14339792	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	intron	14339793	14339863	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	CDS	14339864	14339910	1	+	2	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	exon	14339864	14339910	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	intron	14339911	14339977	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	CDS	14339978	14340151	1	+	0	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	exon	14339978	14340151	.	+	.	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
Ledus.S3	AUGUSTUS	stop_codon	14340152	14340154	.	+	0	transcript_id "Ledus.S3G182200.t1"; gene_id "Ledus.S3G182200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3245.t1 is derived from g680.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7091313	7092945	.	-	.	Ledus.S1G066600
Ledus.S1	AUGUSTUS	transcript	7091313	7092945	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	stop_codon	7091310	7091312	.	-	0	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	CDS	7091313	7091375	0.98	-	0	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	exon	7091313	7091375	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	intron	7091376	7091476	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	CDS	7091477	7091563	0.99	-	0	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	exon	7091477	7091563	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	intron	7091564	7091655	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	CDS	7091656	7091748	1	-	0	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	exon	7091656	7091748	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	intron	7091749	7091835	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	CDS	7091836	7091908	1	-	1	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	exon	7091836	7091908	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	intron	7091909	7092072	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	CDS	7092073	7092167	1	-	0	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	exon	7092073	7092167	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	intron	7092168	7092404	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	CDS	7092405	7092492	1	-	1	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	exon	7092405	7092492	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	intron	7092493	7092607	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	CDS	7092608	7092945	0.83	-	0	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	exon	7092608	7092945	.	-	.	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
Ledus.S1	AUGUSTUS	start_codon	7092943	7092945	.	-	0	transcript_id "Ledus.S1G066600.t1"; gene_id "Ledus.S1G066600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6288.t1 is derived from g3731.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	30147802	30149615	.	+	.	Ledus.S1G370900
Ledus.S1	AUGUSTUS	transcript	30147802	30149615	.	+	.	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	start_codon	30147802	30147804	.	+	0	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	CDS	30147802	30148057	0.25	+	0	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	exon	30147802	30148057	.	+	.	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	intron	30148058	30148167	.	+	.	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	CDS	30148168	30148298	0.98	+	2	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	exon	30148168	30148298	.	+	.	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	intron	30148299	30148390	.	+	.	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	CDS	30148391	30148633	1	+	0	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	exon	30148391	30148633	.	+	.	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	intron	30148634	30148718	.	+	.	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	CDS	30148719	30148992	1	+	0	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	exon	30148719	30148992	.	+	.	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	intron	30148993	30149081	.	+	.	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	CDS	30149082	30149264	0.61	+	2	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	exon	30149082	30149264	.	+	.	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	intron	30149265	30149445	.	+	.	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	CDS	30149446	30149615	0.9	+	2	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	exon	30149446	30149615	.	+	.	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
Ledus.S1	AUGUSTUS	stop_codon	30149616	30149618	.	+	0	transcript_id "Ledus.S1G370900.t1"; gene_id "Ledus.S1G370900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6788.t1 is derived from g4232.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34152757	34153041	.	-	.	Ledus.S1G420900
Ledus.S1	AUGUSTUS	transcript	34152757	34153041	.	-	.	transcript_id "Ledus.S1G420900.t1"; gene_id "Ledus.S1G420900"
Ledus.S1	AUGUSTUS	stop_codon	34152754	34152756	.	-	0	transcript_id "Ledus.S1G420900.t1"; gene_id "Ledus.S1G420900"
Ledus.S1	AUGUSTUS	CDS	34152757	34153041	0.76	-	0	transcript_id "Ledus.S1G420900.t1"; gene_id "Ledus.S1G420900"
Ledus.S1	AUGUSTUS	exon	34152757	34153041	.	-	.	transcript_id "Ledus.S1G420900.t1"; gene_id "Ledus.S1G420900"
Ledus.S1	AUGUSTUS	start_codon	34153039	34153041	.	-	0	transcript_id "Ledus.S1G420900.t1"; gene_id "Ledus.S1G420900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6804.t1 is derived from g4248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34325576	34327450	.	+	.	Ledus.S1G422500
Ledus.S1	AUGUSTUS	transcript	34325576	34327450	.	+	.	transcript_id "Ledus.S1G422500.t1"; gene_id "Ledus.S1G422500"
Ledus.S1	AUGUSTUS	start_codon	34325576	34325578	.	+	0	transcript_id "Ledus.S1G422500.t1"; gene_id "Ledus.S1G422500"
Ledus.S1	AUGUSTUS	CDS	34325576	34327450	0.52	+	0	transcript_id "Ledus.S1G422500.t1"; gene_id "Ledus.S1G422500"
Ledus.S1	AUGUSTUS	exon	34325576	34327450	.	+	.	transcript_id "Ledus.S1G422500.t1"; gene_id "Ledus.S1G422500"
Ledus.S1	AUGUSTUS	stop_codon	34327451	34327453	.	+	0	transcript_id "Ledus.S1G422500.t1"; gene_id "Ledus.S1G422500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10077.t1 is derived from g11107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12537304	12537954	.	+	.	Ledus.S3G155400
Ledus.S3	AUGUSTUS	transcript	12537304	12537954	.	+	.	transcript_id "Ledus.S3G155400.t1"; gene_id "Ledus.S3G155400"
Ledus.S3	AUGUSTUS	start_codon	12537304	12537306	.	+	0	transcript_id "Ledus.S3G155400.t1"; gene_id "Ledus.S3G155400"
Ledus.S3	AUGUSTUS	CDS	12537304	12537517	1	+	0	transcript_id "Ledus.S3G155400.t1"; gene_id "Ledus.S3G155400"
Ledus.S3	AUGUSTUS	exon	12537304	12537517	.	+	.	transcript_id "Ledus.S3G155400.t1"; gene_id "Ledus.S3G155400"
Ledus.S3	AUGUSTUS	intron	12537518	12537691	.	+	.	transcript_id "Ledus.S3G155400.t1"; gene_id "Ledus.S3G155400"
Ledus.S3	AUGUSTUS	CDS	12537692	12537954	0.77	+	2	transcript_id "Ledus.S3G155400.t1"; gene_id "Ledus.S3G155400"
Ledus.S3	AUGUSTUS	exon	12537692	12537954	.	+	.	transcript_id "Ledus.S3G155400.t1"; gene_id "Ledus.S3G155400"
Ledus.S3	AUGUSTUS	stop_codon	12537955	12537957	.	+	0	transcript_id "Ledus.S3G155400.t1"; gene_id "Ledus.S3G155400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7129.t1 is derived from g6660.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1699584	1700039	.	-	.	Ledus.C7G019000
Ledus.C7	AUGUSTUS	transcript	1699584	1700039	.	-	.	transcript_id "Ledus.C7G019000.t1"; gene_id "Ledus.C7G019000"
Ledus.C7	AUGUSTUS	stop_codon	1699581	1699583	.	-	0	transcript_id "Ledus.C7G019000.t1"; gene_id "Ledus.C7G019000"
Ledus.C7	AUGUSTUS	CDS	1699584	1699647	0.86	-	1	transcript_id "Ledus.C7G019000.t1"; gene_id "Ledus.C7G019000"
Ledus.C7	AUGUSTUS	exon	1699584	1699647	.	-	.	transcript_id "Ledus.C7G019000.t1"; gene_id "Ledus.C7G019000"
Ledus.C7	AUGUSTUS	intron	1699648	1699776	.	-	.	transcript_id "Ledus.C7G019000.t1"; gene_id "Ledus.C7G019000"
Ledus.C7	AUGUSTUS	CDS	1699777	1700039	0.35	-	0	transcript_id "Ledus.C7G019000.t1"; gene_id "Ledus.C7G019000"
Ledus.C7	AUGUSTUS	exon	1699777	1700039	.	-	.	transcript_id "Ledus.C7G019000.t1"; gene_id "Ledus.C7G019000"
Ledus.C7	AUGUSTUS	start_codon	1700037	1700039	.	-	0	transcript_id "Ledus.C7G019000.t1"; gene_id "Ledus.C7G019000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg413.t1 is derived from g7274.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2311797	2312015	.	-	.	Ledus.S2G029500
Ledus.S2	AUGUSTUS	transcript	2311797	2312015	.	-	.	transcript_id "Ledus.S2G029500.t1"; gene_id "Ledus.S2G029500"
Ledus.S2	AUGUSTUS	stop_codon	2311794	2311796	.	-	0	transcript_id "Ledus.S2G029500.t1"; gene_id "Ledus.S2G029500"
Ledus.S2	AUGUSTUS	CDS	2311797	2312015	0.9	-	0	transcript_id "Ledus.S2G029500.t1"; gene_id "Ledus.S2G029500"
Ledus.S2	AUGUSTUS	exon	2311797	2312015	.	-	.	transcript_id "Ledus.S2G029500.t1"; gene_id "Ledus.S2G029500"
Ledus.S2	AUGUSTUS	start_codon	2312013	2312015	.	-	0	transcript_id "Ledus.S2G029500.t1"; gene_id "Ledus.S2G029500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11498.t1 is derived from g5116.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4938536	4939420	.	-	.	Ledus.S4G065400
Ledus.S4	AUGUSTUS	transcript	4938536	4939420	.	-	.	transcript_id "Ledus.S4G065400.t1"; gene_id "Ledus.S4G065400"
Ledus.S4	AUGUSTUS	stop_codon	4938533	4938535	.	-	0	transcript_id "Ledus.S4G065400.t1"; gene_id "Ledus.S4G065400"
Ledus.S4	AUGUSTUS	CDS	4938536	4939420	0.91	-	0	transcript_id "Ledus.S4G065400.t1"; gene_id "Ledus.S4G065400"
Ledus.S4	AUGUSTUS	exon	4938536	4939420	.	-	.	transcript_id "Ledus.S4G065400.t1"; gene_id "Ledus.S4G065400"
Ledus.S4	AUGUSTUS	start_codon	4939418	4939420	.	-	0	transcript_id "Ledus.S4G065400.t1"; gene_id "Ledus.S4G065400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3032.t1 is derived from g467.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	5394699	5395263	.	-	.	Ledus.S1G045300
Ledus.S1	AUGUSTUS	transcript	5394699	5395263	.	-	.	transcript_id "Ledus.S1G045300.t1"; gene_id "Ledus.S1G045300"
Ledus.S1	AUGUSTUS	stop_codon	5394696	5394698	.	-	0	transcript_id "Ledus.S1G045300.t1"; gene_id "Ledus.S1G045300"
Ledus.S1	AUGUSTUS	CDS	5394699	5394967	1	-	2	transcript_id "Ledus.S1G045300.t1"; gene_id "Ledus.S1G045300"
Ledus.S1	AUGUSTUS	exon	5394699	5394967	.	-	.	transcript_id "Ledus.S1G045300.t1"; gene_id "Ledus.S1G045300"
Ledus.S1	AUGUSTUS	intron	5394968	5395076	.	-	.	transcript_id "Ledus.S1G045300.t1"; gene_id "Ledus.S1G045300"
Ledus.S1	AUGUSTUS	CDS	5395077	5395263	0.99	-	0	transcript_id "Ledus.S1G045300.t1"; gene_id "Ledus.S1G045300"
Ledus.S1	AUGUSTUS	exon	5395077	5395263	.	-	.	transcript_id "Ledus.S1G045300.t1"; gene_id "Ledus.S1G045300"
Ledus.S1	AUGUSTUS	start_codon	5395261	5395263	.	-	0	transcript_id "Ledus.S1G045300.t1"; gene_id "Ledus.S1G045300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11549.t1 is derived from g5167.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5235831	5236380	.	-	.	Ledus.S4G070500
Ledus.S4	AUGUSTUS	transcript	5235831	5236380	.	-	.	transcript_id "Ledus.S4G070500.t1"; gene_id "Ledus.S4G070500"
Ledus.S4	AUGUSTUS	stop_codon	5235828	5235830	.	-	0	transcript_id "Ledus.S4G070500.t1"; gene_id "Ledus.S4G070500"
Ledus.S4	AUGUSTUS	CDS	5235831	5235853	1	-	2	transcript_id "Ledus.S4G070500.t1"; gene_id "Ledus.S4G070500"
Ledus.S4	AUGUSTUS	exon	5235831	5235853	.	-	.	transcript_id "Ledus.S4G070500.t1"; gene_id "Ledus.S4G070500"
Ledus.S4	AUGUSTUS	intron	5235854	5235941	.	-	.	transcript_id "Ledus.S4G070500.t1"; gene_id "Ledus.S4G070500"
Ledus.S4	AUGUSTUS	CDS	5235942	5236086	0.84	-	0	transcript_id "Ledus.S4G070500.t1"; gene_id "Ledus.S4G070500"
Ledus.S4	AUGUSTUS	exon	5235942	5236086	.	-	.	transcript_id "Ledus.S4G070500.t1"; gene_id "Ledus.S4G070500"
Ledus.S4	AUGUSTUS	intron	5236087	5236191	.	-	.	transcript_id "Ledus.S4G070500.t1"; gene_id "Ledus.S4G070500"
Ledus.S4	AUGUSTUS	CDS	5236192	5236380	0.69	-	0	transcript_id "Ledus.S4G070500.t1"; gene_id "Ledus.S4G070500"
Ledus.S4	AUGUSTUS	exon	5236192	5236380	.	-	.	transcript_id "Ledus.S4G070500.t1"; gene_id "Ledus.S4G070500"
Ledus.S4	AUGUSTUS	start_codon	5236378	5236380	.	-	0	transcript_id "Ledus.S4G070500.t1"; gene_id "Ledus.S4G070500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg624.t1 is derived from g7485.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	3722864	3725171	.	-	.	Ledus.S2G050600
Ledus.S2	AUGUSTUS	transcript	3722864	3725171	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	stop_codon	3722861	3722863	.	-	0	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	CDS	3722864	3722949	0.99	-	2	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	exon	3722864	3722949	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	intron	3722950	3723051	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	CDS	3723052	3723181	1	-	0	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	exon	3723052	3723181	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	intron	3723182	3723266	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	CDS	3723267	3723335	1	-	0	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	exon	3723267	3723335	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	intron	3723336	3723418	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	CDS	3723419	3723538	1	-	0	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	exon	3723419	3723538	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	intron	3723539	3723701	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	CDS	3723702	3723786	1	-	1	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	exon	3723702	3723786	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	intron	3723787	3723879	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	CDS	3723880	3723965	1	-	0	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	exon	3723880	3723965	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	intron	3723966	3724115	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	CDS	3724116	3724268	1	-	0	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	exon	3724116	3724268	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	intron	3724269	3724384	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	CDS	3724385	3724507	1	-	0	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	exon	3724385	3724507	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	intron	3724508	3724757	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	CDS	3724758	3725171	0.48	-	0	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	exon	3724758	3725171	.	-	.	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
Ledus.S2	AUGUSTUS	start_codon	3725169	3725171	.	-	0	transcript_id "Ledus.S2G050600.t1"; gene_id "Ledus.S2G050600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3381.t1 is derived from g816.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7974834	7975956	.	+	.	Ledus.S1G080200
Ledus.S1	AUGUSTUS	transcript	7974834	7975956	.	+	.	transcript_id "Ledus.S1G080200.t1"; gene_id "Ledus.S1G080200"
Ledus.S1	AUGUSTUS	start_codon	7974834	7974836	.	+	0	transcript_id "Ledus.S1G080200.t1"; gene_id "Ledus.S1G080200"
Ledus.S1	AUGUSTUS	CDS	7974834	7974941	0.78	+	0	transcript_id "Ledus.S1G080200.t1"; gene_id "Ledus.S1G080200"
Ledus.S1	AUGUSTUS	exon	7974834	7974941	.	+	.	transcript_id "Ledus.S1G080200.t1"; gene_id "Ledus.S1G080200"
Ledus.S1	AUGUSTUS	intron	7974942	7975155	.	+	.	transcript_id "Ledus.S1G080200.t1"; gene_id "Ledus.S1G080200"
Ledus.S1	AUGUSTUS	CDS	7975156	7975172	0.99	+	0	transcript_id "Ledus.S1G080200.t1"; gene_id "Ledus.S1G080200"
Ledus.S1	AUGUSTUS	exon	7975156	7975172	.	+	.	transcript_id "Ledus.S1G080200.t1"; gene_id "Ledus.S1G080200"
Ledus.S1	AUGUSTUS	intron	7975173	7975229	.	+	.	transcript_id "Ledus.S1G080200.t1"; gene_id "Ledus.S1G080200"
Ledus.S1	AUGUSTUS	CDS	7975230	7975956	0.47	+	1	transcript_id "Ledus.S1G080200.t1"; gene_id "Ledus.S1G080200"
Ledus.S1	AUGUSTUS	exon	7975230	7975956	.	+	.	transcript_id "Ledus.S1G080200.t1"; gene_id "Ledus.S1G080200"
Ledus.S1	AUGUSTUS	stop_codon	7975957	7975959	.	+	0	transcript_id "Ledus.S1G080200.t1"; gene_id "Ledus.S1G080200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg452.t1 is derived from g7313.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2666679	2667101	.	-	.	Ledus.S2G033400
Ledus.S2	AUGUSTUS	transcript	2666679	2667101	.	-	.	transcript_id "Ledus.S2G033400.t1"; gene_id "Ledus.S2G033400"
Ledus.S2	AUGUSTUS	stop_codon	2666676	2666678	.	-	0	transcript_id "Ledus.S2G033400.t1"; gene_id "Ledus.S2G033400"
Ledus.S2	AUGUSTUS	CDS	2666679	2667101	0.97	-	0	transcript_id "Ledus.S2G033400.t1"; gene_id "Ledus.S2G033400"
Ledus.S2	AUGUSTUS	exon	2666679	2667101	.	-	.	transcript_id "Ledus.S2G033400.t1"; gene_id "Ledus.S2G033400"
Ledus.S2	AUGUSTUS	start_codon	2667099	2667101	.	-	0	transcript_id "Ledus.S2G033400.t1"; gene_id "Ledus.S2G033400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3781.t1 is derived from g1217.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11957785	11958113	.	+	.	Ledus.S1G120200
Ledus.S1	AUGUSTUS	transcript	11957785	11958113	.	+	.	transcript_id "Ledus.S1G120200.t1"; gene_id "Ledus.S1G120200"
Ledus.S1	AUGUSTUS	start_codon	11957785	11957787	.	+	0	transcript_id "Ledus.S1G120200.t1"; gene_id "Ledus.S1G120200"
Ledus.S1	AUGUSTUS	CDS	11957785	11957878	0.93	+	0	transcript_id "Ledus.S1G120200.t1"; gene_id "Ledus.S1G120200"
Ledus.S1	AUGUSTUS	exon	11957785	11957878	.	+	.	transcript_id "Ledus.S1G120200.t1"; gene_id "Ledus.S1G120200"
Ledus.S1	AUGUSTUS	intron	11957879	11957952	.	+	.	transcript_id "Ledus.S1G120200.t1"; gene_id "Ledus.S1G120200"
Ledus.S1	AUGUSTUS	CDS	11957953	11958113	0.78	+	2	transcript_id "Ledus.S1G120200.t1"; gene_id "Ledus.S1G120200"
Ledus.S1	AUGUSTUS	exon	11957953	11958113	.	+	.	transcript_id "Ledus.S1G120200.t1"; gene_id "Ledus.S1G120200"
Ledus.S1	AUGUSTUS	stop_codon	11958114	11958116	.	+	0	transcript_id "Ledus.S1G120200.t1"; gene_id "Ledus.S1G120200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg10111.t1 is derived from g11141.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12880569	12882092	.	-	.	Ledus.S3G158800
Ledus.S3	AUGUSTUS	transcript	12880569	12881888	.	-	.	transcript_id "Ledus.S3G158800.t1"; gene_id "Ledus.S3G158800"
Ledus.S3	AUGUSTUS	stop_codon	12880566	12880568	.	-	0	transcript_id "Ledus.S3G158800.t1"; gene_id "Ledus.S3G158800"
Ledus.S3	AUGUSTUS	CDS	12880569	12881888	1	-	0	transcript_id "Ledus.S3G158800.t1"; gene_id "Ledus.S3G158800"
Ledus.S3	AUGUSTUS	exon	12880569	12881888	.	-	.	transcript_id "Ledus.S3G158800.t1"; gene_id "Ledus.S3G158800"
Ledus.S3	AUGUSTUS	start_codon	12881886	12881888	.	-	0	transcript_id "Ledus.S3G158800.t1"; gene_id "Ledus.S3G158800"
Ledus.S3	AUGUSTUS	transcript	12880569	12882092	.	-	.	transcript_id "Ledus.S3G158800.t2"; gene_id "Ledus.S3G158800"
Ledus.S3	AUGUSTUS	stop_codon	12880566	12880568	.	-	0	transcript_id "Ledus.S3G158800.t2"; gene_id "Ledus.S3G158800"
Ledus.S3	AUGUSTUS	CDS	12880569	12882092	0.55	-	0	transcript_id "Ledus.S3G158800.t2"; gene_id "Ledus.S3G158800"
Ledus.S3	AUGUSTUS	exon	12880569	12882092	.	-	.	transcript_id "Ledus.S3G158800.t2"; gene_id "Ledus.S3G158800"
Ledus.S3	AUGUSTUS	start_codon	12882090	12882092	.	-	0	transcript_id "Ledus.S3G158800.t2"; gene_id "Ledus.S3G158800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1412.t1 is derived from g8273.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9936601	9938320	.	-	.	Ledus.S2G129400
Ledus.S2	AUGUSTUS	transcript	9936601	9938320	.	-	.	transcript_id "Ledus.S2G129400.t1"; gene_id "Ledus.S2G129400"
Ledus.S2	AUGUSTUS	stop_codon	9936598	9936600	.	-	0	transcript_id "Ledus.S2G129400.t1"; gene_id "Ledus.S2G129400"
Ledus.S2	AUGUSTUS	CDS	9936601	9937236	0.85	-	0	transcript_id "Ledus.S2G129400.t1"; gene_id "Ledus.S2G129400"
Ledus.S2	AUGUSTUS	exon	9936601	9937236	.	-	.	transcript_id "Ledus.S2G129400.t1"; gene_id "Ledus.S2G129400"
Ledus.S2	AUGUSTUS	intron	9937237	9937323	.	-	.	transcript_id "Ledus.S2G129400.t1"; gene_id "Ledus.S2G129400"
Ledus.S2	AUGUSTUS	CDS	9937324	9937818	1	-	0	transcript_id "Ledus.S2G129400.t1"; gene_id "Ledus.S2G129400"
Ledus.S2	AUGUSTUS	exon	9937324	9937818	.	-	.	transcript_id "Ledus.S2G129400.t1"; gene_id "Ledus.S2G129400"
Ledus.S2	AUGUSTUS	intron	9937819	9937897	.	-	.	transcript_id "Ledus.S2G129400.t1"; gene_id "Ledus.S2G129400"
Ledus.S2	AUGUSTUS	CDS	9937898	9938320	0.88	-	0	transcript_id "Ledus.S2G129400.t1"; gene_id "Ledus.S2G129400"
Ledus.S2	AUGUSTUS	exon	9937898	9938320	.	-	.	transcript_id "Ledus.S2G129400.t1"; gene_id "Ledus.S2G129400"
Ledus.S2	AUGUSTUS	start_codon	9938318	9938320	.	-	0	transcript_id "Ledus.S2G129400.t1"; gene_id "Ledus.S2G129400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5022.t1 is derived from g2460.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21183289	21183921	.	-	.	Ledus.S1G244300
Ledus.S1	AUGUSTUS	transcript	21183289	21183921	.	-	.	transcript_id "Ledus.S1G244300.t1"; gene_id "Ledus.S1G244300"
Ledus.S1	AUGUSTUS	stop_codon	21183286	21183288	.	-	0	transcript_id "Ledus.S1G244300.t1"; gene_id "Ledus.S1G244300"
Ledus.S1	AUGUSTUS	CDS	21183289	21183422	0.85	-	2	transcript_id "Ledus.S1G244300.t1"; gene_id "Ledus.S1G244300"
Ledus.S1	AUGUSTUS	exon	21183289	21183422	.	-	.	transcript_id "Ledus.S1G244300.t1"; gene_id "Ledus.S1G244300"
Ledus.S1	AUGUSTUS	intron	21183423	21183585	.	-	.	transcript_id "Ledus.S1G244300.t1"; gene_id "Ledus.S1G244300"
Ledus.S1	AUGUSTUS	CDS	21183586	21183689	0.91	-	1	transcript_id "Ledus.S1G244300.t1"; gene_id "Ledus.S1G244300"
Ledus.S1	AUGUSTUS	exon	21183586	21183689	.	-	.	transcript_id "Ledus.S1G244300.t1"; gene_id "Ledus.S1G244300"
Ledus.S1	AUGUSTUS	intron	21183690	21183907	.	-	.	transcript_id "Ledus.S1G244300.t1"; gene_id "Ledus.S1G244300"
Ledus.S1	AUGUSTUS	CDS	21183908	21183921	0.59	-	0	transcript_id "Ledus.S1G244300.t1"; gene_id "Ledus.S1G244300"
Ledus.S1	AUGUSTUS	exon	21183908	21183921	.	-	.	transcript_id "Ledus.S1G244300.t1"; gene_id "Ledus.S1G244300"
Ledus.S1	AUGUSTUS	start_codon	21183919	21183921	.	-	0	transcript_id "Ledus.S1G244300.t1"; gene_id "Ledus.S1G244300"
# This transcript jg12626.t2 is derived from g6248.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12627.t1 is derived from g6249.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13360656	13362221	.	+	.	Ledus.S4G178300
Ledus.S4	AUGUSTUS	transcript	13360656	13362221	.	+	.	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	start_codon	13360656	13360658	.	+	0	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	CDS	13360656	13360854	0.99	+	0	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	exon	13360656	13360854	.	+	.	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	intron	13360855	13360943	.	+	.	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	CDS	13360944	13361156	0.99	+	2	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	exon	13360944	13361156	.	+	.	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	intron	13361157	13361305	.	+	.	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	CDS	13361306	13361712	1	+	2	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	exon	13361306	13361712	.	+	.	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	intron	13361713	13361800	.	+	.	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	CDS	13361801	13361902	1	+	0	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	exon	13361801	13361902	.	+	.	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	intron	13361903	13361996	.	+	.	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	CDS	13361997	13362221	1	+	0	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	exon	13361997	13362221	.	+	.	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
Ledus.S4	AUGUSTUS	stop_codon	13362222	13362224	.	+	0	transcript_id "Ledus.S4G178300.t1"; gene_id "Ledus.S4G178300"
# This transcript jg1332.t2 is derived from g8193.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1333.t1 is derived from g8194.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	9304814	9306198	.	+	.	Ledus.S2G121500
Ledus.S2	AUGUSTUS	transcript	9304814	9306198	.	+	.	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	start_codon	9304814	9304816	.	+	0	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	CDS	9304814	9304892	0.86	+	0	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	exon	9304814	9304892	.	+	.	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	intron	9304893	9305115	.	+	.	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	CDS	9305116	9305125	0.92	+	2	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	exon	9305116	9305125	.	+	.	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	intron	9305126	9305223	.	+	.	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	CDS	9305224	9305518	0.99	+	1	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	exon	9305224	9305518	.	+	.	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	intron	9305519	9305663	.	+	.	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	CDS	9305664	9305837	1	+	0	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	exon	9305664	9305837	.	+	.	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	intron	9305838	9305916	.	+	.	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	CDS	9305917	9306198	1	+	0	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	exon	9305917	9306198	.	+	.	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
Ledus.S2	AUGUSTUS	stop_codon	9306199	9306201	.	+	0	transcript_id "Ledus.S2G121500.t1"; gene_id "Ledus.S2G121500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10389.t1 is derived from g11419.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14717909	14718118	.	-	.	Ledus.S3G186600
Ledus.S3	AUGUSTUS	transcript	14717909	14718118	.	-	.	transcript_id "Ledus.S3G186600.t1"; gene_id "Ledus.S3G186600"
Ledus.S3	AUGUSTUS	stop_codon	14717906	14717908	.	-	0	transcript_id "Ledus.S3G186600.t1"; gene_id "Ledus.S3G186600"
Ledus.S3	AUGUSTUS	CDS	14717909	14718118	0.93	-	0	transcript_id "Ledus.S3G186600.t1"; gene_id "Ledus.S3G186600"
Ledus.S3	AUGUSTUS	exon	14717909	14718118	.	-	.	transcript_id "Ledus.S3G186600.t1"; gene_id "Ledus.S3G186600"
Ledus.S3	AUGUSTUS	start_codon	14718116	14718118	.	-	0	transcript_id "Ledus.S3G186600.t1"; gene_id "Ledus.S3G186600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5381.t1 is derived from g2820.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	23942970	23943411	.	+	.	Ledus.S1G280200
Ledus.S1	AUGUSTUS	transcript	23942970	23943411	.	+	.	transcript_id "Ledus.S1G280200.t1"; gene_id "Ledus.S1G280200"
Ledus.S1	AUGUSTUS	start_codon	23942970	23942972	.	+	0	transcript_id "Ledus.S1G280200.t1"; gene_id "Ledus.S1G280200"
Ledus.S1	AUGUSTUS	CDS	23942970	23943055	0.7	+	0	transcript_id "Ledus.S1G280200.t1"; gene_id "Ledus.S1G280200"
Ledus.S1	AUGUSTUS	exon	23942970	23943055	.	+	.	transcript_id "Ledus.S1G280200.t1"; gene_id "Ledus.S1G280200"
Ledus.S1	AUGUSTUS	intron	23943056	23943116	.	+	.	transcript_id "Ledus.S1G280200.t1"; gene_id "Ledus.S1G280200"
Ledus.S1	AUGUSTUS	CDS	23943117	23943411	0.74	+	1	transcript_id "Ledus.S1G280200.t1"; gene_id "Ledus.S1G280200"
Ledus.S1	AUGUSTUS	exon	23943117	23943411	.	+	.	transcript_id "Ledus.S1G280200.t1"; gene_id "Ledus.S1G280200"
Ledus.S1	AUGUSTUS	stop_codon	23943412	23943414	.	+	0	transcript_id "Ledus.S1G280200.t1"; gene_id "Ledus.S1G280200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8957.t1 is derived from g9987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3474511	3477294	.	-	.	Ledus.S3G043400
Ledus.S3	AUGUSTUS	transcript	3474511	3477294	.	-	.	transcript_id "Ledus.S3G043400.t1"; gene_id "Ledus.S3G043400"
Ledus.S3	AUGUSTUS	stop_codon	3474508	3474510	.	-	0	transcript_id "Ledus.S3G043400.t1"; gene_id "Ledus.S3G043400"
Ledus.S3	AUGUSTUS	CDS	3474511	3475517	0.78	-	2	transcript_id "Ledus.S3G043400.t1"; gene_id "Ledus.S3G043400"
Ledus.S3	AUGUSTUS	exon	3474511	3475517	.	-	.	transcript_id "Ledus.S3G043400.t1"; gene_id "Ledus.S3G043400"
Ledus.S3	AUGUSTUS	intron	3475518	3475616	.	-	.	transcript_id "Ledus.S3G043400.t1"; gene_id "Ledus.S3G043400"
Ledus.S3	AUGUSTUS	CDS	3475617	3477294	0.76	-	0	transcript_id "Ledus.S3G043400.t1"; gene_id "Ledus.S3G043400"
Ledus.S3	AUGUSTUS	exon	3475617	3477294	.	-	.	transcript_id "Ledus.S3G043400.t1"; gene_id "Ledus.S3G043400"
Ledus.S3	AUGUSTUS	start_codon	3477292	3477294	.	-	0	transcript_id "Ledus.S3G043400.t1"; gene_id "Ledus.S3G043400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2748.t1 is derived from g182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2975417	2976139	.	+	.	Ledus.S1G016900
Ledus.S1	AUGUSTUS	transcript	2975417	2976139	.	+	.	transcript_id "Ledus.S1G016900.t1"; gene_id "Ledus.S1G016900"
Ledus.S1	AUGUSTUS	start_codon	2975417	2975419	.	+	0	transcript_id "Ledus.S1G016900.t1"; gene_id "Ledus.S1G016900"
Ledus.S1	AUGUSTUS	CDS	2975417	2976139	0.96	+	0	transcript_id "Ledus.S1G016900.t1"; gene_id "Ledus.S1G016900"
Ledus.S1	AUGUSTUS	exon	2975417	2976139	.	+	.	transcript_id "Ledus.S1G016900.t1"; gene_id "Ledus.S1G016900"
Ledus.S1	AUGUSTUS	stop_codon	2976140	2976142	.	+	0	transcript_id "Ledus.S1G016900.t1"; gene_id "Ledus.S1G016900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12456.t1 is derived from g6077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12088806	12091198	.	+	.	Ledus.S4G161200
Ledus.S4	AUGUSTUS	transcript	12088806	12091198	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	start_codon	12088806	12088808	.	+	0	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	CDS	12088806	12088893	0.49	+	0	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	exon	12088806	12088893	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	intron	12088894	12088989	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	CDS	12088990	12089076	1	+	2	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	exon	12088990	12089076	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	intron	12089077	12089158	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	CDS	12089159	12089330	1	+	2	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	exon	12089159	12089330	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	intron	12089331	12089457	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	CDS	12089458	12089546	1	+	1	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	exon	12089458	12089546	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	intron	12089547	12089688	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	CDS	12089689	12089912	1	+	2	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	exon	12089689	12089912	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	intron	12089913	12090003	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	CDS	12090004	12090072	0.96	+	0	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	exon	12090004	12090072	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	intron	12090073	12090408	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	CDS	12090409	12090454	0.92	+	0	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	exon	12090409	12090454	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	intron	12090455	12090526	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	CDS	12090527	12090707	1	+	2	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	exon	12090527	12090707	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	intron	12090708	12090836	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	CDS	12090837	12091044	0.82	+	1	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	exon	12090837	12091044	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	intron	12091045	12091156	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	CDS	12091157	12091198	0.97	+	0	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	exon	12091157	12091198	.	+	.	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
Ledus.S4	AUGUSTUS	stop_codon	12091199	12091201	.	+	0	transcript_id "Ledus.S4G161200.t1"; gene_id "Ledus.S4G161200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2742.t1 is derived from g176.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	2846083	2846639	.	-	.	Ledus.S1G016300
Ledus.S1	AUGUSTUS	transcript	2846083	2846639	.	-	.	transcript_id "Ledus.S1G016300.t1"; gene_id "Ledus.S1G016300"
Ledus.S1	AUGUSTUS	stop_codon	2846080	2846082	.	-	0	transcript_id "Ledus.S1G016300.t1"; gene_id "Ledus.S1G016300"
Ledus.S1	AUGUSTUS	CDS	2846083	2846218	0.98	-	1	transcript_id "Ledus.S1G016300.t1"; gene_id "Ledus.S1G016300"
Ledus.S1	AUGUSTUS	exon	2846083	2846218	.	-	.	transcript_id "Ledus.S1G016300.t1"; gene_id "Ledus.S1G016300"
Ledus.S1	AUGUSTUS	intron	2846219	2846538	.	-	.	transcript_id "Ledus.S1G016300.t1"; gene_id "Ledus.S1G016300"
Ledus.S1	AUGUSTUS	CDS	2846539	2846639	0.56	-	0	transcript_id "Ledus.S1G016300.t1"; gene_id "Ledus.S1G016300"
Ledus.S1	AUGUSTUS	exon	2846539	2846639	.	-	.	transcript_id "Ledus.S1G016300.t1"; gene_id "Ledus.S1G016300"
Ledus.S1	AUGUSTUS	start_codon	2846637	2846639	.	-	0	transcript_id "Ledus.S1G016300.t1"; gene_id "Ledus.S1G016300"
# This transcript jg1625.t2 is derived from g8486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1626.t1 is derived from g8487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	11475112	11476525	.	-	.	Ledus.S2G150800
Ledus.S2	AUGUSTUS	transcript	11475112	11476525	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	stop_codon	11475109	11475111	.	-	0	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	CDS	11475112	11475344	1	-	2	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	exon	11475112	11475344	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	intron	11475345	11475436	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	CDS	11475437	11475592	1	-	2	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	exon	11475437	11475592	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	intron	11475593	11475693	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	CDS	11475694	11475810	1	-	2	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	exon	11475694	11475810	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	intron	11475811	11475943	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	CDS	11475944	11476052	1	-	0	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	exon	11475944	11476052	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	intron	11476053	11476137	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	CDS	11476138	11476195	1	-	1	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	exon	11476138	11476195	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	intron	11476196	11476358	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	CDS	11476359	11476423	1	-	0	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	exon	11476359	11476423	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	intron	11476424	11476519	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	CDS	11476520	11476525	0.98	-	0	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	exon	11476520	11476525	.	-	.	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
Ledus.S2	AUGUSTUS	start_codon	11476523	11476525	.	-	0	transcript_id "Ledus.S2G150800.t1"; gene_id "Ledus.S2G150800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12969.t1 is derived from g6779.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	1356557	1356856	.	-	.	Ledus.S6G003100
Ledus.S6	AUGUSTUS	transcript	1356557	1356856	.	-	.	transcript_id "Ledus.S6G003100.t1"; gene_id "Ledus.S6G003100"
Ledus.S6	AUGUSTUS	stop_codon	1356554	1356556	.	-	0	transcript_id "Ledus.S6G003100.t1"; gene_id "Ledus.S6G003100"
Ledus.S6	AUGUSTUS	CDS	1356557	1356856	0.62	-	0	transcript_id "Ledus.S6G003100.t1"; gene_id "Ledus.S6G003100"
Ledus.S6	AUGUSTUS	exon	1356557	1356856	.	-	.	transcript_id "Ledus.S6G003100.t1"; gene_id "Ledus.S6G003100"
Ledus.S6	AUGUSTUS	start_codon	1356854	1356856	.	-	0	transcript_id "Ledus.S6G003100.t1"; gene_id "Ledus.S6G003100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1108.t1 is derived from g7969.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7564404	7564661	.	+	.	Ledus.S2G099000
Ledus.S2	AUGUSTUS	transcript	7564404	7564661	.	+	.	transcript_id "Ledus.S2G099000.t1"; gene_id "Ledus.S2G099000"
Ledus.S2	AUGUSTUS	start_codon	7564404	7564406	.	+	0	transcript_id "Ledus.S2G099000.t1"; gene_id "Ledus.S2G099000"
Ledus.S2	AUGUSTUS	CDS	7564404	7564661	0.93	+	0	transcript_id "Ledus.S2G099000.t1"; gene_id "Ledus.S2G099000"
Ledus.S2	AUGUSTUS	exon	7564404	7564661	.	+	.	transcript_id "Ledus.S2G099000.t1"; gene_id "Ledus.S2G099000"
Ledus.S2	AUGUSTUS	stop_codon	7564662	7564664	.	+	0	transcript_id "Ledus.S2G099000.t1"; gene_id "Ledus.S2G099000"
# This transcript jg9456.t2 is derived from g10486.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9457.t1 is derived from g10487.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7131684	7132771	.	-	.	Ledus.S3G093400
Ledus.S3	AUGUSTUS	transcript	7131684	7132771	.	-	.	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	stop_codon	7131681	7131683	.	-	0	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	CDS	7131684	7131716	0.95	-	0	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	exon	7131684	7131716	.	-	.	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	intron	7131717	7131832	.	-	.	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	CDS	7131833	7131907	0.99	-	0	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	exon	7131833	7131907	.	-	.	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	intron	7131908	7132070	.	-	.	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	CDS	7132071	7132166	1	-	0	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	exon	7132071	7132166	.	-	.	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	intron	7132167	7132252	.	-	.	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	CDS	7132253	7132363	1	-	0	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	exon	7132253	7132363	.	-	.	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	intron	7132364	7132481	.	-	.	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	CDS	7132482	7132514	1	-	0	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	exon	7132482	7132514	.	-	.	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	intron	7132515	7132711	.	-	.	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	CDS	7132712	7132771	0.96	-	0	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	exon	7132712	7132771	.	-	.	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
Ledus.S3	AUGUSTUS	start_codon	7132769	7132771	.	-	0	transcript_id "Ledus.S3G093400.t1"; gene_id "Ledus.S3G093400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9924.t1 is derived from g10954.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11235331	11236885	.	-	.	Ledus.S3G140100
Ledus.S3	AUGUSTUS	transcript	11235331	11236885	.	-	.	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	stop_codon	11235328	11235330	.	-	0	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	CDS	11235331	11235419	0.99	-	2	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	exon	11235331	11235419	.	-	.	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	intron	11235420	11235593	.	-	.	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	CDS	11235594	11235737	0.78	-	2	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	exon	11235594	11235737	.	-	.	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	intron	11235738	11235850	.	-	.	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	CDS	11235851	11236103	0.92	-	0	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	exon	11235851	11236103	.	-	.	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	intron	11236104	11236193	.	-	.	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	CDS	11236194	11236619	1	-	0	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	exon	11236194	11236619	.	-	.	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	intron	11236620	11236705	.	-	.	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	CDS	11236706	11236885	0.97	-	0	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	exon	11236706	11236885	.	-	.	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
Ledus.S3	AUGUSTUS	start_codon	11236883	11236885	.	-	0	transcript_id "Ledus.S3G140100.t1"; gene_id "Ledus.S3G140100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11540.t1 is derived from g5158.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5188516	5191093	.	+	.	Ledus.S4G069600
Ledus.S4	AUGUSTUS	transcript	5188516	5191093	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	start_codon	5188516	5188518	.	+	0	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5188516	5188664	0.96	+	0	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5188516	5188664	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	intron	5188665	5188782	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5188783	5188873	0.99	+	1	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5188783	5188873	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	intron	5188874	5188962	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5188963	5189052	1	+	0	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5188963	5189052	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	intron	5189053	5189146	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5189147	5189224	0.9	+	0	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5189147	5189224	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	intron	5189225	5189341	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5189342	5189416	0.96	+	0	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5189342	5189416	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	intron	5189417	5189536	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5189537	5189589	1	+	0	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5189537	5189589	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	intron	5189590	5189752	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5189753	5189903	1	+	1	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5189753	5189903	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	intron	5189904	5189976	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5189977	5190090	1	+	0	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5189977	5190090	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	intron	5190091	5190181	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5190182	5190308	1	+	0	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5190182	5190308	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	intron	5190309	5190387	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5190388	5190494	1	+	2	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5190388	5190494	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	intron	5190495	5190635	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5190636	5190777	1	+	0	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5190636	5190777	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	intron	5190778	5190877	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5190878	5190930	1	+	2	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5190878	5190930	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	intron	5190931	5191015	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	CDS	5191016	5191093	1	+	0	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	exon	5191016	5191093	.	+	.	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
Ledus.S4	AUGUSTUS	stop_codon	5191094	5191096	.	+	0	transcript_id "Ledus.S4G069600.t1"; gene_id "Ledus.S4G069600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2955.t1 is derived from g390.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4896205	4896611	.	+	.	Ledus.S1G037600
Ledus.S1	AUGUSTUS	transcript	4896205	4896611	.	+	.	transcript_id "Ledus.S1G037600.t1"; gene_id "Ledus.S1G037600"
Ledus.S1	AUGUSTUS	start_codon	4896205	4896207	.	+	0	transcript_id "Ledus.S1G037600.t1"; gene_id "Ledus.S1G037600"
Ledus.S1	AUGUSTUS	CDS	4896205	4896406	0.79	+	0	transcript_id "Ledus.S1G037600.t1"; gene_id "Ledus.S1G037600"
Ledus.S1	AUGUSTUS	exon	4896205	4896406	.	+	.	transcript_id "Ledus.S1G037600.t1"; gene_id "Ledus.S1G037600"
Ledus.S1	AUGUSTUS	intron	4896407	4896494	.	+	.	transcript_id "Ledus.S1G037600.t1"; gene_id "Ledus.S1G037600"
Ledus.S1	AUGUSTUS	CDS	4896495	4896501	0.91	+	2	transcript_id "Ledus.S1G037600.t1"; gene_id "Ledus.S1G037600"
Ledus.S1	AUGUSTUS	exon	4896495	4896501	.	+	.	transcript_id "Ledus.S1G037600.t1"; gene_id "Ledus.S1G037600"
Ledus.S1	AUGUSTUS	intron	4896502	4896589	.	+	.	transcript_id "Ledus.S1G037600.t1"; gene_id "Ledus.S1G037600"
Ledus.S1	AUGUSTUS	CDS	4896590	4896611	0.57	+	1	transcript_id "Ledus.S1G037600.t1"; gene_id "Ledus.S1G037600"
Ledus.S1	AUGUSTUS	exon	4896590	4896611	.	+	.	transcript_id "Ledus.S1G037600.t1"; gene_id "Ledus.S1G037600"
Ledus.S1	AUGUSTUS	stop_codon	4896612	4896614	.	+	0	transcript_id "Ledus.S1G037600.t1"; gene_id "Ledus.S1G037600"
# This transcript jg5074.t2 is derived from g2513.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5075.t1 is derived from g2514.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21470450	21472399	.	-	.	Ledus.S1G249600
Ledus.S1	AUGUSTUS	transcript	21470450	21472399	.	-	.	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	stop_codon	21470447	21470449	.	-	0	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	CDS	21470450	21471064	1	-	0	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	exon	21470450	21471064	.	-	.	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	intron	21471065	21471157	.	-	.	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	CDS	21471158	21471300	1	-	2	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	exon	21471158	21471300	.	-	.	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	intron	21471301	21471402	.	-	.	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	CDS	21471403	21471654	1	-	2	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	exon	21471403	21471654	.	-	.	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	intron	21471655	21471780	.	-	.	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	CDS	21471781	21471931	1	-	0	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	exon	21471781	21471931	.	-	.	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	intron	21471932	21472020	.	-	.	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	CDS	21472021	21472193	0.99	-	2	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	exon	21472021	21472193	.	-	.	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	intron	21472194	21472341	.	-	.	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	CDS	21472342	21472399	0.99	-	0	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	exon	21472342	21472399	.	-	.	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
Ledus.S1	AUGUSTUS	start_codon	21472397	21472399	.	-	0	transcript_id "Ledus.S1G249600.t1"; gene_id "Ledus.S1G249600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5254.t1 is derived from g2693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22752414	22753592	.	+	.	Ledus.S1G267500
Ledus.S1	AUGUSTUS	transcript	22752414	22753592	.	+	.	transcript_id "Ledus.S1G267500.t1"; gene_id "Ledus.S1G267500"
Ledus.S1	AUGUSTUS	start_codon	22752414	22752416	.	+	0	transcript_id "Ledus.S1G267500.t1"; gene_id "Ledus.S1G267500"
Ledus.S1	AUGUSTUS	CDS	22752414	22753592	0.67	+	0	transcript_id "Ledus.S1G267500.t1"; gene_id "Ledus.S1G267500"
Ledus.S1	AUGUSTUS	exon	22752414	22753592	.	+	.	transcript_id "Ledus.S1G267500.t1"; gene_id "Ledus.S1G267500"
Ledus.S1	AUGUSTUS	stop_codon	22753593	22753595	.	+	0	transcript_id "Ledus.S1G267500.t1"; gene_id "Ledus.S1G267500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7804.t1 is derived from g12475.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6874104	6874343	.	+	.	Ledus.S5G058200
Ledus.S5	AUGUSTUS	transcript	6874104	6874343	.	+	.	transcript_id "Ledus.S5G058200.t1"; gene_id "Ledus.S5G058200"
Ledus.S5	AUGUSTUS	start_codon	6874104	6874106	.	+	0	transcript_id "Ledus.S5G058200.t1"; gene_id "Ledus.S5G058200"
Ledus.S5	AUGUSTUS	CDS	6874104	6874343	0.23	+	0	transcript_id "Ledus.S5G058200.t1"; gene_id "Ledus.S5G058200"
Ledus.S5	AUGUSTUS	exon	6874104	6874343	.	+	.	transcript_id "Ledus.S5G058200.t1"; gene_id "Ledus.S5G058200"
Ledus.S5	AUGUSTUS	stop_codon	6874344	6874346	.	+	0	transcript_id "Ledus.S5G058200.t1"; gene_id "Ledus.S5G058200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7115.t1 is derived from g6646.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1653564	1654525	.	-	.	Ledus.C7G017600
Ledus.C7	AUGUSTUS	transcript	1653564	1654525	.	-	.	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	stop_codon	1653561	1653563	.	-	0	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	CDS	1653564	1653770	1	-	0	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	exon	1653564	1653770	.	-	.	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	intron	1653771	1653849	.	-	.	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	CDS	1653850	1653980	1	-	2	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	exon	1653850	1653980	.	-	.	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	intron	1653981	1654059	.	-	.	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	CDS	1654060	1654124	1	-	1	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	exon	1654060	1654124	.	-	.	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	intron	1654125	1654205	.	-	.	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	CDS	1654206	1654265	1	-	1	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	exon	1654206	1654265	.	-	.	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	intron	1654266	1654349	.	-	.	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	CDS	1654350	1654525	0.6	-	0	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	exon	1654350	1654525	.	-	.	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
Ledus.C7	AUGUSTUS	start_codon	1654523	1654525	.	-	0	transcript_id "Ledus.C7G017600.t1"; gene_id "Ledus.C7G017600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2888.t1 is derived from g323.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4404009	4407325	.	+	.	Ledus.S1G030900
Ledus.S1	AUGUSTUS	transcript	4404009	4407325	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	start_codon	4404009	4404011	.	+	0	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	CDS	4404009	4404159	0.57	+	0	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	exon	4404009	4404159	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	intron	4404160	4404245	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	CDS	4404246	4404376	1	+	2	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	exon	4404246	4404376	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	intron	4404377	4404477	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	CDS	4404478	4404740	0.99	+	0	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	exon	4404478	4404740	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	intron	4404741	4404807	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	CDS	4404808	4404963	1	+	1	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	exon	4404808	4404963	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	intron	4404964	4405042	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	CDS	4405043	4405226	1	+	1	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	exon	4405043	4405226	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	intron	4405227	4405316	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	CDS	4405317	4405601	1	+	0	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	exon	4405317	4405601	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	intron	4405602	4405677	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	CDS	4405678	4405962	1	+	0	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	exon	4405678	4405962	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	intron	4405963	4406506	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	CDS	4406507	4406791	1	+	0	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	exon	4406507	4406791	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	intron	4406792	4406867	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	CDS	4406868	4406975	0.95	+	0	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	exon	4406868	4406975	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	intron	4406976	4407064	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	CDS	4407065	4407325	1	+	0	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	exon	4407065	4407325	.	+	.	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
Ledus.S1	AUGUSTUS	stop_codon	4407326	4407328	.	+	0	transcript_id "Ledus.S1G030900.t1"; gene_id "Ledus.S1G030900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12913.t1 is derived from g4405.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C9	AUGUSTUS	gene	302029	303049	.	+	.	Ledus.C9G002100
Ledus.C9	AUGUSTUS	transcript	302029	303049	.	+	.	transcript_id "Ledus.C9G002100.t1"; gene_id "Ledus.C9G002100"
Ledus.C9	AUGUSTUS	start_codon	302029	302031	.	+	0	transcript_id "Ledus.C9G002100.t1"; gene_id "Ledus.C9G002100"
Ledus.C9	AUGUSTUS	CDS	302029	302083	0.79	+	0	transcript_id "Ledus.C9G002100.t1"; gene_id "Ledus.C9G002100"
Ledus.C9	AUGUSTUS	exon	302029	302083	.	+	.	transcript_id "Ledus.C9G002100.t1"; gene_id "Ledus.C9G002100"
Ledus.C9	AUGUSTUS	intron	302084	302165	.	+	.	transcript_id "Ledus.C9G002100.t1"; gene_id "Ledus.C9G002100"
Ledus.C9	AUGUSTUS	CDS	302166	302380	1	+	2	transcript_id "Ledus.C9G002100.t1"; gene_id "Ledus.C9G002100"
Ledus.C9	AUGUSTUS	exon	302166	302380	.	+	.	transcript_id "Ledus.C9G002100.t1"; gene_id "Ledus.C9G002100"
Ledus.C9	AUGUSTUS	intron	302381	302629	.	+	.	transcript_id "Ledus.C9G002100.t1"; gene_id "Ledus.C9G002100"
Ledus.C9	AUGUSTUS	CDS	302630	303049	0.99	+	0	transcript_id "Ledus.C9G002100.t1"; gene_id "Ledus.C9G002100"
Ledus.C9	AUGUSTUS	exon	302630	303049	.	+	.	transcript_id "Ledus.C9G002100.t1"; gene_id "Ledus.C9G002100"
Ledus.C9	AUGUSTUS	stop_codon	303050	303052	.	+	0	transcript_id "Ledus.C9G002100.t1"; gene_id "Ledus.C9G002100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12540.t1 is derived from g6162.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12804846	12805395	.	+	.	Ledus.S4G169600
Ledus.S4	AUGUSTUS	transcript	12804846	12805395	.	+	.	transcript_id "Ledus.S4G169600.t1"; gene_id "Ledus.S4G169600"
Ledus.S4	AUGUSTUS	start_codon	12804846	12804848	.	+	0	transcript_id "Ledus.S4G169600.t1"; gene_id "Ledus.S4G169600"
Ledus.S4	AUGUSTUS	CDS	12804846	12804854	0.98	+	0	transcript_id "Ledus.S4G169600.t1"; gene_id "Ledus.S4G169600"
Ledus.S4	AUGUSTUS	exon	12804846	12804854	.	+	.	transcript_id "Ledus.S4G169600.t1"; gene_id "Ledus.S4G169600"
Ledus.S4	AUGUSTUS	intron	12804855	12805059	.	+	.	transcript_id "Ledus.S4G169600.t1"; gene_id "Ledus.S4G169600"
Ledus.S4	AUGUSTUS	CDS	12805060	12805155	0.98	+	0	transcript_id "Ledus.S4G169600.t1"; gene_id "Ledus.S4G169600"
Ledus.S4	AUGUSTUS	exon	12805060	12805155	.	+	.	transcript_id "Ledus.S4G169600.t1"; gene_id "Ledus.S4G169600"
Ledus.S4	AUGUSTUS	intron	12805156	12805269	.	+	.	transcript_id "Ledus.S4G169600.t1"; gene_id "Ledus.S4G169600"
Ledus.S4	AUGUSTUS	CDS	12805270	12805395	0.92	+	0	transcript_id "Ledus.S4G169600.t1"; gene_id "Ledus.S4G169600"
Ledus.S4	AUGUSTUS	exon	12805270	12805395	.	+	.	transcript_id "Ledus.S4G169600.t1"; gene_id "Ledus.S4G169600"
Ledus.S4	AUGUSTUS	stop_codon	12805396	12805398	.	+	0	transcript_id "Ledus.S4G169600.t1"; gene_id "Ledus.S4G169600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8870.t1 is derived from g9900.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	2610128	2612379	.	-	.	Ledus.S3G034700
Ledus.S3	AUGUSTUS	transcript	2610128	2612379	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	stop_codon	2610125	2610127	.	-	0	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	CDS	2610128	2610490	0.96	-	0	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	exon	2610128	2610490	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	intron	2610491	2610590	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	CDS	2610591	2610720	1	-	1	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	exon	2610591	2610720	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	intron	2610721	2610806	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	CDS	2610807	2611096	1	-	0	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	exon	2610807	2611096	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	intron	2611097	2611180	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	CDS	2611181	2611362	0.99	-	2	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	exon	2611181	2611362	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	intron	2611363	2611461	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	CDS	2611462	2611681	1	-	0	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	exon	2611462	2611681	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	intron	2611682	2611783	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	CDS	2611784	2611802	0.99	-	1	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	exon	2611784	2611802	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	intron	2611803	2611938	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	CDS	2611939	2612199	1	-	1	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	exon	2611939	2612199	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	intron	2612200	2612299	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	CDS	2612300	2612379	0.98	-	0	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	exon	2612300	2612379	.	-	.	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
Ledus.S3	AUGUSTUS	start_codon	2612377	2612379	.	-	0	transcript_id "Ledus.S3G034700.t1"; gene_id "Ledus.S3G034700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3254.t1 is derived from g689.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7139302	7142486	.	-	.	Ledus.S1G067500
Ledus.S1	AUGUSTUS	transcript	7139302	7142486	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	stop_codon	7139299	7139301	.	-	0	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7139302	7139349	0.94	-	0	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7139302	7139349	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7139350	7139463	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7139464	7139518	0.96	-	1	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7139464	7139518	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7139519	7139617	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7139618	7139743	1	-	1	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7139618	7139743	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7139744	7139927	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7139928	7139994	1	-	2	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7139928	7139994	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7139995	7140118	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7140119	7140190	1	-	2	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7140119	7140190	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7140191	7140281	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7140282	7140378	1	-	0	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7140282	7140378	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7140379	7140456	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7140457	7140553	1	-	1	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7140457	7140553	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7140554	7140624	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7140625	7140709	1	-	2	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7140625	7140709	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7140710	7140802	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7140803	7140879	1	-	1	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7140803	7140879	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7140880	7140966	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7140967	7141005	1	-	1	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7140967	7141005	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7141006	7141085	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7141086	7141123	1	-	0	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7141086	7141123	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7141124	7141238	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7141239	7141326	1	-	1	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7141239	7141326	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7141327	7141437	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7141438	7141527	1	-	1	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7141438	7141527	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7141528	7141619	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7141620	7141681	1	-	0	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7141620	7141681	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7141682	7141803	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7141804	7141860	1	-	0	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7141804	7141860	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7141861	7141946	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7141947	7142036	1	-	0	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7141947	7142036	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7142037	7142113	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7142114	7142236	1	-	0	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7142114	7142236	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	intron	7142237	7142327	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	CDS	7142328	7142486	1	-	0	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	exon	7142328	7142486	.	-	.	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
Ledus.S1	AUGUSTUS	start_codon	7142484	7142486	.	-	0	transcript_id "Ledus.S1G067500.t1"; gene_id "Ledus.S1G067500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2575.t1 is derived from g9438.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	19169678	19171033	.	-	.	Ledus.S2G245700
Ledus.S2	AUGUSTUS	transcript	19169678	19171033	.	-	.	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	stop_codon	19169675	19169677	.	-	0	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	CDS	19169678	19169805	0.48	-	2	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	exon	19169678	19169805	.	-	.	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	intron	19169806	19169900	.	-	.	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	CDS	19169901	19170006	0.45	-	0	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	exon	19169901	19170006	.	-	.	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	intron	19170007	19170095	.	-	.	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	CDS	19170096	19170266	1	-	0	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	exon	19170096	19170266	.	-	.	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	intron	19170267	19170347	.	-	.	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	CDS	19170348	19170420	1	-	1	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	exon	19170348	19170420	.	-	.	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	intron	19170421	19170579	.	-	.	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	CDS	19170580	19170720	1	-	1	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	exon	19170580	19170720	.	-	.	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	intron	19170721	19170989	.	-	.	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	CDS	19170990	19171033	0.98	-	0	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	exon	19170990	19171033	.	-	.	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
Ledus.S2	AUGUSTUS	start_codon	19171031	19171033	.	-	0	transcript_id "Ledus.S2G245700.t1"; gene_id "Ledus.S2G245700"
# This transcript jg9152.t2 is derived from g10182.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9153.t1 is derived from g10183.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4899966	4900535	.	-	.	Ledus.S3G063000
Ledus.S3	AUGUSTUS	transcript	4899966	4900535	.	-	.	transcript_id "Ledus.S3G063000.t1"; gene_id "Ledus.S3G063000"
Ledus.S3	AUGUSTUS	stop_codon	4899963	4899965	.	-	0	transcript_id "Ledus.S3G063000.t1"; gene_id "Ledus.S3G063000"
Ledus.S3	AUGUSTUS	CDS	4899966	4900077	1	-	1	transcript_id "Ledus.S3G063000.t1"; gene_id "Ledus.S3G063000"
Ledus.S3	AUGUSTUS	exon	4899966	4900077	.	-	.	transcript_id "Ledus.S3G063000.t1"; gene_id "Ledus.S3G063000"
Ledus.S3	AUGUSTUS	intron	4900078	4900200	.	-	.	transcript_id "Ledus.S3G063000.t1"; gene_id "Ledus.S3G063000"
Ledus.S3	AUGUSTUS	CDS	4900201	4900291	1	-	2	transcript_id "Ledus.S3G063000.t1"; gene_id "Ledus.S3G063000"
Ledus.S3	AUGUSTUS	exon	4900201	4900291	.	-	.	transcript_id "Ledus.S3G063000.t1"; gene_id "Ledus.S3G063000"
Ledus.S3	AUGUSTUS	intron	4900292	4900447	.	-	.	transcript_id "Ledus.S3G063000.t1"; gene_id "Ledus.S3G063000"
Ledus.S3	AUGUSTUS	CDS	4900448	4900535	0.97	-	0	transcript_id "Ledus.S3G063000.t1"; gene_id "Ledus.S3G063000"
Ledus.S3	AUGUSTUS	exon	4900448	4900535	.	-	.	transcript_id "Ledus.S3G063000.t1"; gene_id "Ledus.S3G063000"
Ledus.S3	AUGUSTUS	start_codon	4900533	4900535	.	-	0	transcript_id "Ledus.S3G063000.t1"; gene_id "Ledus.S3G063000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1063.t1 is derived from g7924.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	7205035	7207887	.	+	.	Ledus.S2G094500
Ledus.S2	AUGUSTUS	transcript	7205035	7207887	.	+	.	transcript_id "Ledus.S2G094500.t1"; gene_id "Ledus.S2G094500"
Ledus.S2	AUGUSTUS	start_codon	7205035	7205037	.	+	0	transcript_id "Ledus.S2G094500.t1"; gene_id "Ledus.S2G094500"
Ledus.S2	AUGUSTUS	CDS	7205035	7205289	1	+	0	transcript_id "Ledus.S2G094500.t1"; gene_id "Ledus.S2G094500"
Ledus.S2	AUGUSTUS	exon	7205035	7205289	.	+	.	transcript_id "Ledus.S2G094500.t1"; gene_id "Ledus.S2G094500"
Ledus.S2	AUGUSTUS	intron	7205290	7205370	.	+	.	transcript_id "Ledus.S2G094500.t1"; gene_id "Ledus.S2G094500"
Ledus.S2	AUGUSTUS	CDS	7205371	7207887	1	+	0	transcript_id "Ledus.S2G094500.t1"; gene_id "Ledus.S2G094500"
Ledus.S2	AUGUSTUS	exon	7205371	7207887	.	+	.	transcript_id "Ledus.S2G094500.t1"; gene_id "Ledus.S2G094500"
Ledus.S2	AUGUSTUS	stop_codon	7207888	7207890	.	+	0	transcript_id "Ledus.S2G094500.t1"; gene_id "Ledus.S2G094500"
# This transcript jg12613.t2 is derived from g6235.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12614.t1 is derived from g6236.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	13236766	13237457	.	-	.	Ledus.S4G177000
Ledus.S4	AUGUSTUS	transcript	13236766	13237457	.	-	.	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	stop_codon	13236763	13236765	.	-	0	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	CDS	13236766	13236881	0.98	-	2	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	exon	13236766	13236881	.	-	.	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	intron	13236882	13236967	.	-	.	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	CDS	13236968	13237040	1	-	0	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	exon	13236968	13237040	.	-	.	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	intron	13237041	13237131	.	-	.	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	CDS	13237132	13237193	1	-	2	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	exon	13237132	13237193	.	-	.	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	intron	13237194	13237327	.	-	.	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	CDS	13237328	13237457	1	-	0	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	exon	13237328	13237457	.	-	.	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
Ledus.S4	AUGUSTUS	start_codon	13237455	13237457	.	-	0	transcript_id "Ledus.S4G177000.t1"; gene_id "Ledus.S4G177000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11716.t1 is derived from g5335.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6204193	6205211	.	+	.	Ledus.S4G087200
Ledus.S4	AUGUSTUS	transcript	6204193	6205211	.	+	.	transcript_id "Ledus.S4G087200.t1"; gene_id "Ledus.S4G087200"
Ledus.S4	AUGUSTUS	start_codon	6204193	6204195	.	+	0	transcript_id "Ledus.S4G087200.t1"; gene_id "Ledus.S4G087200"
Ledus.S4	AUGUSTUS	CDS	6204193	6204272	0.35	+	0	transcript_id "Ledus.S4G087200.t1"; gene_id "Ledus.S4G087200"
Ledus.S4	AUGUSTUS	exon	6204193	6204272	.	+	.	transcript_id "Ledus.S4G087200.t1"; gene_id "Ledus.S4G087200"
Ledus.S4	AUGUSTUS	intron	6204273	6204452	.	+	.	transcript_id "Ledus.S4G087200.t1"; gene_id "Ledus.S4G087200"
Ledus.S4	AUGUSTUS	CDS	6204453	6204517	0.84	+	1	transcript_id "Ledus.S4G087200.t1"; gene_id "Ledus.S4G087200"
Ledus.S4	AUGUSTUS	exon	6204453	6204517	.	+	.	transcript_id "Ledus.S4G087200.t1"; gene_id "Ledus.S4G087200"
Ledus.S4	AUGUSTUS	intron	6204518	6204594	.	+	.	transcript_id "Ledus.S4G087200.t1"; gene_id "Ledus.S4G087200"
Ledus.S4	AUGUSTUS	CDS	6204595	6205211	0.98	+	2	transcript_id "Ledus.S4G087200.t1"; gene_id "Ledus.S4G087200"
Ledus.S4	AUGUSTUS	exon	6204595	6205211	.	+	.	transcript_id "Ledus.S4G087200.t1"; gene_id "Ledus.S4G087200"
Ledus.S4	AUGUSTUS	stop_codon	6205212	6205214	.	+	0	transcript_id "Ledus.S4G087200.t1"; gene_id "Ledus.S4G087200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1258.t1 is derived from g8119.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8937896	8938561	.	+	.	Ledus.S2G114000
Ledus.S2	AUGUSTUS	transcript	8937896	8938561	.	+	.	transcript_id "Ledus.S2G114000.t1"; gene_id "Ledus.S2G114000"
Ledus.S2	AUGUSTUS	start_codon	8937896	8937898	.	+	0	transcript_id "Ledus.S2G114000.t1"; gene_id "Ledus.S2G114000"
Ledus.S2	AUGUSTUS	CDS	8937896	8938561	0.53	+	0	transcript_id "Ledus.S2G114000.t1"; gene_id "Ledus.S2G114000"
Ledus.S2	AUGUSTUS	exon	8937896	8938561	.	+	.	transcript_id "Ledus.S2G114000.t1"; gene_id "Ledus.S2G114000"
Ledus.S2	AUGUSTUS	stop_codon	8938562	8938564	.	+	0	transcript_id "Ledus.S2G114000.t1"; gene_id "Ledus.S2G114000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8961.t1 is derived from g9991.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3538929	3542015	.	+	.	Ledus.S3G043800
Ledus.S3	AUGUSTUS	transcript	3538929	3542015	.	+	.	transcript_id "Ledus.S3G043800.t1"; gene_id "Ledus.S3G043800"
Ledus.S3	AUGUSTUS	start_codon	3538929	3538931	.	+	0	transcript_id "Ledus.S3G043800.t1"; gene_id "Ledus.S3G043800"
Ledus.S3	AUGUSTUS	CDS	3538929	3539191	1	+	0	transcript_id "Ledus.S3G043800.t1"; gene_id "Ledus.S3G043800"
Ledus.S3	AUGUSTUS	exon	3538929	3539191	.	+	.	transcript_id "Ledus.S3G043800.t1"; gene_id "Ledus.S3G043800"
Ledus.S3	AUGUSTUS	intron	3539192	3539523	.	+	.	transcript_id "Ledus.S3G043800.t1"; gene_id "Ledus.S3G043800"
Ledus.S3	AUGUSTUS	CDS	3539524	3541490	0.49	+	1	transcript_id "Ledus.S3G043800.t1"; gene_id "Ledus.S3G043800"
Ledus.S3	AUGUSTUS	exon	3539524	3541490	.	+	.	transcript_id "Ledus.S3G043800.t1"; gene_id "Ledus.S3G043800"
Ledus.S3	AUGUSTUS	intron	3541491	3541599	.	+	.	transcript_id "Ledus.S3G043800.t1"; gene_id "Ledus.S3G043800"
Ledus.S3	AUGUSTUS	CDS	3541600	3542015	0.53	+	2	transcript_id "Ledus.S3G043800.t1"; gene_id "Ledus.S3G043800"
Ledus.S3	AUGUSTUS	exon	3541600	3542015	.	+	.	transcript_id "Ledus.S3G043800.t1"; gene_id "Ledus.S3G043800"
Ledus.S3	AUGUSTUS	stop_codon	3542016	3542018	.	+	0	transcript_id "Ledus.S3G043800.t1"; gene_id "Ledus.S3G043800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12366.t1 is derived from g5987.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11449870	11457568	.	+	.	Ledus.S4G152200
Ledus.S4	AUGUSTUS	transcript	11449870	11457568	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	start_codon	11449870	11449872	.	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11449870	11449947	0.99	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11449870	11449947	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11449948	11450187	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11450188	11450289	0.97	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11450188	11450289	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11450290	11450407	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11450408	11450474	0.81	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11450408	11450474	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11450475	11450584	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11450585	11450676	0.62	+	2	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11450585	11450676	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11450677	11450769	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11450770	11450849	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11450770	11450849	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11450850	11450944	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11450945	11451095	1	+	1	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11450945	11451095	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11451096	11451176	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11451177	11451251	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11451177	11451251	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11451252	11451470	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11451471	11451627	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11451471	11451627	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11451628	11451727	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11451728	11451816	1	+	2	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11451728	11451816	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11451817	11451919	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11451920	11451994	0.89	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11451920	11451994	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11451995	11452067	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11452068	11452169	0.97	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11452068	11452169	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11452170	11452282	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11452283	11452357	0.99	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11452283	11452357	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11452358	11452501	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11452502	11452636	0.99	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11452502	11452636	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11452637	11452749	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11452750	11452843	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11452750	11452843	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11452844	11452956	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11452957	11453042	1	+	2	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11452957	11453042	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11453043	11453153	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11453154	11453256	0.96	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11453154	11453256	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11453257	11453378	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11453379	11453557	0.98	+	2	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11453379	11453557	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11453558	11453671	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11453672	11453725	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11453672	11453725	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11453726	11453825	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11453826	11453911	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11453826	11453911	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11453912	11453984	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11453985	11454065	1	+	1	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11453985	11454065	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11454066	11454256	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11454257	11454347	1	+	1	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11454257	11454347	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11454348	11454436	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11454437	11454511	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11454437	11454511	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11454512	11454591	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11454592	11454651	0.98	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11454592	11454651	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11454652	11454748	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11454749	11454801	0.98	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11454749	11454801	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11454802	11454874	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11454875	11454940	0.96	+	1	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11454875	11454940	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11454941	11455098	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11455099	11455189	1	+	1	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11455099	11455189	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11455190	11455285	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11455286	11455365	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11455286	11455365	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11455366	11455445	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11455446	11455527	1	+	1	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11455446	11455527	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11455528	11455613	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11455614	11455736	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11455614	11455736	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11455737	11455850	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11455851	11455943	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11455851	11455943	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11455944	11456038	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11456039	11456245	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11456039	11456245	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11456246	11456349	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11456350	11456418	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11456350	11456418	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11456419	11456524	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11456525	11456703	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11456525	11456703	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11456704	11456785	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11456786	11456948	1	+	1	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11456786	11456948	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11456949	11457076	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11457077	11457181	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11457077	11457181	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11457182	11457268	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11457269	11457386	1	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11457269	11457386	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	intron	11457387	11457476	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	CDS	11457477	11457568	1	+	2	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	exon	11457477	11457568	.	+	.	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
Ledus.S4	AUGUSTUS	stop_codon	11457569	11457571	.	+	0	transcript_id "Ledus.S4G152200.t1"; gene_id "Ledus.S4G152200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11779.t1 is derived from g5398.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6740034	6743792	.	-	.	Ledus.S4G093500
Ledus.S4	AUGUSTUS	transcript	6740034	6743792	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	stop_codon	6740031	6740033	.	-	0	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	CDS	6740034	6740612	1	-	0	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	exon	6740034	6740612	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	intron	6740613	6740708	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	CDS	6740709	6740858	1	-	0	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	exon	6740709	6740858	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	intron	6740859	6741729	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	CDS	6741730	6741804	1	-	0	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	exon	6741730	6741804	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	intron	6741805	6741967	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	CDS	6741968	6742153	0.99	-	0	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	exon	6741968	6742153	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	intron	6742154	6742518	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	CDS	6742519	6742645	1	-	1	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	exon	6742519	6742645	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	intron	6742646	6742811	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	CDS	6742812	6742963	1	-	0	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	exon	6742812	6742963	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	intron	6742964	6743046	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	CDS	6743047	6743125	1	-	1	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	exon	6743047	6743125	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	intron	6743126	6743262	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	CDS	6743263	6743414	1	-	0	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	exon	6743263	6743414	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	intron	6743415	6743561	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	CDS	6743562	6743792	0.97	-	0	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	exon	6743562	6743792	.	-	.	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
Ledus.S4	AUGUSTUS	start_codon	6743790	6743792	.	-	0	transcript_id "Ledus.S4G093500.t1"; gene_id "Ledus.S4G093500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5816.t1 is derived from g3258.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	27075667	27077373	.	+	.	Ledus.S1G323700
Ledus.S1	AUGUSTUS	transcript	27075667	27077373	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	start_codon	27075667	27075669	.	+	0	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	CDS	27075667	27075771	0.44	+	0	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	exon	27075667	27075771	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	intron	27075772	27075877	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	CDS	27075878	27075924	0.81	+	0	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	exon	27075878	27075924	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	intron	27075925	27076016	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	CDS	27076017	27076073	0.8	+	1	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	exon	27076017	27076073	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	intron	27076074	27076166	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	CDS	27076167	27076239	0.7	+	1	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	exon	27076167	27076239	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	intron	27076240	27076319	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	CDS	27076320	27076423	0.4	+	0	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	exon	27076320	27076423	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	intron	27076424	27076724	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	CDS	27076725	27076883	0.59	+	1	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	exon	27076725	27076883	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	intron	27076884	27077276	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	CDS	27077277	27077373	0.17	+	1	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	exon	27077277	27077373	.	+	.	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
Ledus.S1	AUGUSTUS	stop_codon	27077374	27077376	.	+	0	transcript_id "Ledus.S1G323700.t1"; gene_id "Ledus.S1G323700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3665.t1 is derived from g1101.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10559072	10562324	.	-	.	Ledus.S1G108600
Ledus.S1	AUGUSTUS	transcript	10559072	10562324	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	stop_codon	10559069	10559071	.	-	0	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10559072	10559141	0.95	-	1	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10559072	10559141	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10559142	10559239	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10559240	10559358	1	-	0	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10559240	10559358	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10559359	10559480	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10559481	10559588	1	-	0	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10559481	10559588	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10559589	10559675	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10559676	10559744	1	-	0	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10559676	10559744	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10559745	10559887	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10559888	10559982	1	-	2	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10559888	10559982	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10559983	10560102	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10560103	10560307	1	-	0	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10560103	10560307	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10560308	10560401	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10560402	10560488	1	-	0	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10560402	10560488	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10560489	10560579	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10560580	10560694	1	-	1	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10560580	10560694	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10560695	10560799	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10560800	10560906	0.99	-	0	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10560800	10560906	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10560907	10561098	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10561099	10561191	1	-	0	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10561099	10561191	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10561192	10561313	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10561314	10561361	1	-	0	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10561314	10561361	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10561362	10561526	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10561527	10561675	1	-	2	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10561527	10561675	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10561676	10561809	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10561810	10561945	1	-	0	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10561810	10561945	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10561946	10562039	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10562040	10562103	1	-	1	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10562040	10562103	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	intron	10562104	10562190	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	CDS	10562191	10562324	0.54	-	0	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	exon	10562191	10562324	.	-	.	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
Ledus.S1	AUGUSTUS	start_codon	10562322	10562324	.	-	0	transcript_id "Ledus.S1G108600.t1"; gene_id "Ledus.S1G108600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3901.t1 is derived from g1337.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13489737	13491612	.	-	.	Ledus.S1G132200
Ledus.S1	AUGUSTUS	transcript	13489737	13491612	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	stop_codon	13489734	13489736	.	-	0	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	CDS	13489737	13489852	0.63	-	2	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	exon	13489737	13489852	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	intron	13489853	13489950	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	CDS	13489951	13490018	1	-	1	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	exon	13489951	13490018	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	intron	13490019	13490106	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	CDS	13490107	13490223	1	-	1	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	exon	13490107	13490223	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	intron	13490224	13490304	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	CDS	13490305	13490434	1	-	2	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	exon	13490305	13490434	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	intron	13490435	13490527	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	CDS	13490528	13490591	1	-	0	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	exon	13490528	13490591	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	intron	13490592	13490670	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	CDS	13490671	13490770	1	-	1	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	exon	13490671	13490770	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	intron	13490771	13490865	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	CDS	13490866	13490957	1	-	0	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	exon	13490866	13490957	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	intron	13490958	13491034	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	CDS	13491035	13491173	1	-	1	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	exon	13491035	13491173	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	intron	13491174	13491262	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	CDS	13491263	13491357	1	-	0	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	exon	13491263	13491357	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	intron	13491358	13491441	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	CDS	13491442	13491612	0.62	-	0	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	exon	13491442	13491612	.	-	.	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
Ledus.S1	AUGUSTUS	start_codon	13491610	13491612	.	-	0	transcript_id "Ledus.S1G132200.t1"; gene_id "Ledus.S1G132200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11973.t1 is derived from g5592.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	8228561	8230564	.	-	.	Ledus.S4G112900
Ledus.S4	AUGUSTUS	transcript	8228561	8230564	.	-	.	transcript_id "Ledus.S4G112900.t1"; gene_id "Ledus.S4G112900"
Ledus.S4	AUGUSTUS	stop_codon	8228558	8228560	.	-	0	transcript_id "Ledus.S4G112900.t1"; gene_id "Ledus.S4G112900"
Ledus.S4	AUGUSTUS	CDS	8228561	8230006	0.92	-	0	transcript_id "Ledus.S4G112900.t1"; gene_id "Ledus.S4G112900"
Ledus.S4	AUGUSTUS	exon	8228561	8230006	.	-	.	transcript_id "Ledus.S4G112900.t1"; gene_id "Ledus.S4G112900"
Ledus.S4	AUGUSTUS	intron	8230007	8230111	.	-	.	transcript_id "Ledus.S4G112900.t1"; gene_id "Ledus.S4G112900"
Ledus.S4	AUGUSTUS	CDS	8230112	8230383	0.65	-	2	transcript_id "Ledus.S4G112900.t1"; gene_id "Ledus.S4G112900"
Ledus.S4	AUGUSTUS	exon	8230112	8230383	.	-	.	transcript_id "Ledus.S4G112900.t1"; gene_id "Ledus.S4G112900"
Ledus.S4	AUGUSTUS	intron	8230384	8230491	.	-	.	transcript_id "Ledus.S4G112900.t1"; gene_id "Ledus.S4G112900"
Ledus.S4	AUGUSTUS	CDS	8230492	8230564	0.79	-	0	transcript_id "Ledus.S4G112900.t1"; gene_id "Ledus.S4G112900"
Ledus.S4	AUGUSTUS	exon	8230492	8230564	.	-	.	transcript_id "Ledus.S4G112900.t1"; gene_id "Ledus.S4G112900"
Ledus.S4	AUGUSTUS	start_codon	8230562	8230564	.	-	0	transcript_id "Ledus.S4G112900.t1"; gene_id "Ledus.S4G112900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6010.t1 is derived from g3453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28319042	28323135	.	+	.	Ledus.S1G343100
Ledus.S1	AUGUSTUS	transcript	28319042	28323135	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	start_codon	28319042	28319044	.	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28319042	28319185	0.94	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28319042	28319185	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28319186	28319274	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28319275	28319403	1	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28319275	28319403	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28319404	28319491	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28319492	28319568	0.95	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28319492	28319568	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28319569	28319678	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28319679	28319736	0.99	+	1	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28319679	28319736	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28319737	28319825	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28319826	28319923	1	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28319826	28319923	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28319924	28320008	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28320009	28320060	1	+	1	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28320009	28320060	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28320061	28320201	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28320202	28320258	0.76	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28320202	28320258	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28320259	28320373	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28320374	28320433	1	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28320374	28320433	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28320434	28320522	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28320523	28320567	1	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28320523	28320567	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28320568	28320648	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28320649	28320744	0.99	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28320649	28320744	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28320745	28320831	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28320832	28320916	0.63	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28320832	28320916	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28320917	28321046	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28321047	28321108	0.63	+	2	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28321047	28321108	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28321109	28321201	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28321202	28321269	0.49	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28321202	28321269	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28321270	28321381	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28321382	28321469	0.67	+	1	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28321382	28321469	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28321470	28321560	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28321561	28321605	1	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28321561	28321605	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28321606	28321689	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28321690	28321767	1	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28321690	28321767	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28321768	28321852	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28321853	28321906	1	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28321853	28321906	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28321907	28322025	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28322026	28322079	1	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28322026	28322079	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28322080	28322219	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28322220	28322279	0.6	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28322220	28322279	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28322280	28322367	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28322368	28322401	0.75	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28322368	28322401	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28322402	28322568	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28322569	28322613	0.93	+	2	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28322569	28322613	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28322614	28322715	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28322716	28322868	0.94	+	2	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28322716	28322868	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	intron	28322869	28323064	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	CDS	28323065	28323135	1	+	2	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	exon	28323065	28323135	.	+	.	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
Ledus.S1	AUGUSTUS	stop_codon	28323136	28323138	.	+	0	transcript_id "Ledus.S1G343100.t1"; gene_id "Ledus.S1G343100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg204.t1 is derived from g7065.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	857146	858384	.	+	.	Ledus.S2G008600
Ledus.S2	AUGUSTUS	transcript	857146	858384	.	+	.	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	start_codon	857146	857148	.	+	0	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	CDS	857146	857149	0.95	+	0	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	exon	857146	857149	.	+	.	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	intron	857150	857490	.	+	.	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	CDS	857491	857657	1	+	2	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	exon	857491	857657	.	+	.	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	intron	857658	857847	.	+	.	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	CDS	857848	858045	1	+	0	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	exon	857848	858045	.	+	.	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	intron	858046	858141	.	+	.	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	CDS	858142	858384	1	+	0	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	exon	858142	858384	.	+	.	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
Ledus.S2	AUGUSTUS	stop_codon	858385	858387	.	+	0	transcript_id "Ledus.S2G008600.t1"; gene_id "Ledus.S2G008600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8402.t1 is derived from g13074.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	11488950	11490012	.	-	.	Ledus.S5G118000
Ledus.S5	AUGUSTUS	transcript	11488950	11490012	.	-	.	transcript_id "Ledus.S5G118000.t1"; gene_id "Ledus.S5G118000"
Ledus.S5	AUGUSTUS	stop_codon	11488947	11488949	.	-	0	transcript_id "Ledus.S5G118000.t1"; gene_id "Ledus.S5G118000"
Ledus.S5	AUGUSTUS	CDS	11488950	11489025	1	-	1	transcript_id "Ledus.S5G118000.t1"; gene_id "Ledus.S5G118000"
Ledus.S5	AUGUSTUS	exon	11488950	11489025	.	-	.	transcript_id "Ledus.S5G118000.t1"; gene_id "Ledus.S5G118000"
Ledus.S5	AUGUSTUS	intron	11489026	11489086	.	-	.	transcript_id "Ledus.S5G118000.t1"; gene_id "Ledus.S5G118000"
Ledus.S5	AUGUSTUS	CDS	11489087	11489232	0.66	-	0	transcript_id "Ledus.S5G118000.t1"; gene_id "Ledus.S5G118000"
Ledus.S5	AUGUSTUS	exon	11489087	11489232	.	-	.	transcript_id "Ledus.S5G118000.t1"; gene_id "Ledus.S5G118000"
Ledus.S5	AUGUSTUS	intron	11489233	11489574	.	-	.	transcript_id "Ledus.S5G118000.t1"; gene_id "Ledus.S5G118000"
Ledus.S5	AUGUSTUS	CDS	11489575	11490012	0.96	-	0	transcript_id "Ledus.S5G118000.t1"; gene_id "Ledus.S5G118000"
Ledus.S5	AUGUSTUS	exon	11489575	11490012	.	-	.	transcript_id "Ledus.S5G118000.t1"; gene_id "Ledus.S5G118000"
Ledus.S5	AUGUSTUS	start_codon	11490010	11490012	.	-	0	transcript_id "Ledus.S5G118000.t1"; gene_id "Ledus.S5G118000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg350.t1 is derived from g7211.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1856668	1857681	.	-	.	Ledus.S2G023200
Ledus.S2	AUGUSTUS	transcript	1856668	1857681	.	-	.	transcript_id "Ledus.S2G023200.t1"; gene_id "Ledus.S2G023200"
Ledus.S2	AUGUSTUS	stop_codon	1856665	1856667	.	-	0	transcript_id "Ledus.S2G023200.t1"; gene_id "Ledus.S2G023200"
Ledus.S2	AUGUSTUS	CDS	1856668	1856716	0.78	-	1	transcript_id "Ledus.S2G023200.t1"; gene_id "Ledus.S2G023200"
Ledus.S2	AUGUSTUS	exon	1856668	1856716	.	-	.	transcript_id "Ledus.S2G023200.t1"; gene_id "Ledus.S2G023200"
Ledus.S2	AUGUSTUS	intron	1856717	1856809	.	-	.	transcript_id "Ledus.S2G023200.t1"; gene_id "Ledus.S2G023200"
Ledus.S2	AUGUSTUS	CDS	1856810	1857681	0.97	-	0	transcript_id "Ledus.S2G023200.t1"; gene_id "Ledus.S2G023200"
Ledus.S2	AUGUSTUS	exon	1856810	1857681	.	-	.	transcript_id "Ledus.S2G023200.t1"; gene_id "Ledus.S2G023200"
Ledus.S2	AUGUSTUS	start_codon	1857679	1857681	.	-	0	transcript_id "Ledus.S2G023200.t1"; gene_id "Ledus.S2G023200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4979.t1 is derived from g2417.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20957833	20959360	.	-	.	Ledus.S1G240000
Ledus.S1	AUGUSTUS	transcript	20957833	20959360	.	-	.	transcript_id "Ledus.S1G240000.t1"; gene_id "Ledus.S1G240000"
Ledus.S1	AUGUSTUS	stop_codon	20957830	20957832	.	-	0	transcript_id "Ledus.S1G240000.t1"; gene_id "Ledus.S1G240000"
Ledus.S1	AUGUSTUS	CDS	20957833	20958167	0.97	-	2	transcript_id "Ledus.S1G240000.t1"; gene_id "Ledus.S1G240000"
Ledus.S1	AUGUSTUS	exon	20957833	20958167	.	-	.	transcript_id "Ledus.S1G240000.t1"; gene_id "Ledus.S1G240000"
Ledus.S1	AUGUSTUS	intron	20958168	20958258	.	-	.	transcript_id "Ledus.S1G240000.t1"; gene_id "Ledus.S1G240000"
Ledus.S1	AUGUSTUS	CDS	20958259	20959360	0.65	-	0	transcript_id "Ledus.S1G240000.t1"; gene_id "Ledus.S1G240000"
Ledus.S1	AUGUSTUS	exon	20958259	20959360	.	-	.	transcript_id "Ledus.S1G240000.t1"; gene_id "Ledus.S1G240000"
Ledus.S1	AUGUSTUS	start_codon	20959358	20959360	.	-	0	transcript_id "Ledus.S1G240000.t1"; gene_id "Ledus.S1G240000"
# This transcript jg3907.t2 is derived from g1343.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3908.t1 is derived from g1344.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13525086	13529807	.	+	.	Ledus.S1G132900
Ledus.S1	AUGUSTUS	transcript	13525086	13529807	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	start_codon	13525086	13525088	.	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13525086	13525179	0.49	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13525086	13525179	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13525180	13525267	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13525268	13525347	1	+	2	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13525268	13525347	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13525348	13525425	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13525426	13525518	1	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13525426	13525518	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13525519	13525638	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13525639	13525740	1	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13525639	13525740	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13525741	13525870	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13525871	13525993	1	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13525871	13525993	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13525994	13526088	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13526089	13526150	1	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13526089	13526150	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13526151	13526240	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13526241	13526321	1	+	1	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13526241	13526321	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13526322	13526638	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13526639	13526693	1	+	1	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13526639	13526693	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13526694	13526780	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13526781	13526849	1	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13526781	13526849	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13526850	13526932	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13526933	13527115	1	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13526933	13527115	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13527116	13527206	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13527207	13527258	1	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13527207	13527258	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13527259	13527353	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13527354	13527402	0.78	+	2	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13527354	13527402	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13527403	13527527	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13527528	13527624	0.61	+	1	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13527528	13527624	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13527625	13527768	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13527769	13528008	1	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13527769	13528008	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13528009	13528089	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13528090	13528212	1	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13528090	13528212	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13528213	13528294	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13528295	13528656	0.99	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13528295	13528656	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13528657	13528726	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13528727	13528826	1	+	1	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13528727	13528826	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13528827	13528914	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13528915	13528974	1	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13528915	13528974	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13528975	13529064	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13529065	13529151	0.98	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13529065	13529151	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13529152	13529263	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13529264	13529383	0.96	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13529264	13529383	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	intron	13529384	13529486	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	CDS	13529487	13529807	1	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	exon	13529487	13529807	.	+	.	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
Ledus.S1	AUGUSTUS	stop_codon	13529808	13529810	.	+	0	transcript_id "Ledus.S1G132900.t1"; gene_id "Ledus.S1G132900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9839.t1 is derived from g10869.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	10426605	10429161	.	+	.	Ledus.S3G131600
Ledus.S3	AUGUSTUS	transcript	10426605	10429161	.	+	.	transcript_id "Ledus.S3G131600.t1"; gene_id "Ledus.S3G131600"
Ledus.S3	AUGUSTUS	start_codon	10426605	10426607	.	+	0	transcript_id "Ledus.S3G131600.t1"; gene_id "Ledus.S3G131600"
Ledus.S3	AUGUSTUS	CDS	10426605	10428606	0.85	+	0	transcript_id "Ledus.S3G131600.t1"; gene_id "Ledus.S3G131600"
Ledus.S3	AUGUSTUS	exon	10426605	10428606	.	+	.	transcript_id "Ledus.S3G131600.t1"; gene_id "Ledus.S3G131600"
Ledus.S3	AUGUSTUS	intron	10428607	10428889	.	+	.	transcript_id "Ledus.S3G131600.t1"; gene_id "Ledus.S3G131600"
Ledus.S3	AUGUSTUS	CDS	10428890	10429161	0.93	+	2	transcript_id "Ledus.S3G131600.t1"; gene_id "Ledus.S3G131600"
Ledus.S3	AUGUSTUS	exon	10428890	10429161	.	+	.	transcript_id "Ledus.S3G131600.t1"; gene_id "Ledus.S3G131600"
Ledus.S3	AUGUSTUS	stop_codon	10429162	10429164	.	+	0	transcript_id "Ledus.S3G131600.t1"; gene_id "Ledus.S3G131600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7903.t1 is derived from g12574.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7739625	7746760	.	-	.	Ledus.S5G068100
Ledus.S5	AUGUSTUS	transcript	7739625	7746760	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	stop_codon	7739622	7739624	.	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7739625	7739715	1	-	1	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7739625	7739715	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7739716	7739799	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7739800	7739849	1	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7739800	7739849	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7739850	7739980	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7739981	7740076	1	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7739981	7740076	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7740077	7740166	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7740167	7740241	1	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7740167	7740241	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7740242	7740338	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7740339	7740440	0.99	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7740339	7740440	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7740441	7740564	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7740565	7740642	1	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7740565	7740642	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7740643	7740811	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7740812	7741013	0.96	-	1	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7740812	7741013	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7741014	7741185	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7741186	7741271	1	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7741186	7741271	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7741272	7741411	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7741412	7741621	1	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7741412	7741621	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7741622	7741707	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7741708	7741815	1	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7741708	7741815	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7741816	7741962	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7741963	7742075	0.88	-	2	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7741963	7742075	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7742076	7742184	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7742185	7742285	0.83	-	1	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7742185	7742285	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7742286	7742402	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7742403	7742452	1	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7742403	7742452	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7742453	7742653	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7742654	7742814	1	-	2	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7742654	7742814	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7742815	7742922	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7742923	7742990	1	-	1	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7742923	7742990	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7742991	7743179	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7743180	7743292	1	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7743180	7743292	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7743293	7743375	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7743376	7743542	1	-	2	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7743376	7743542	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7743543	7743680	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7743681	7744009	1	-	1	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7743681	7744009	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7744010	7744159	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7744160	7744266	1	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7744160	7744266	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7744267	7744424	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7744425	7744614	1	-	1	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7744425	7744614	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7744615	7744713	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7744714	7744878	1	-	1	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7744714	7744878	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7744879	7745233	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7745234	7745343	1	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7745234	7745343	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7745344	7746028	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7746029	7746133	1	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7746029	7746133	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7746134	7746257	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7746258	7746431	0.99	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7746258	7746431	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	intron	7746432	7746532	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	CDS	7746533	7746760	0.97	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	exon	7746533	7746760	.	-	.	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
Ledus.S5	AUGUSTUS	start_codon	7746758	7746760	.	-	0	transcript_id "Ledus.S5G068100.t1"; gene_id "Ledus.S5G068100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3554.t1 is derived from g990.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9529462	9529659	.	+	.	Ledus.S1G097500
Ledus.S1	AUGUSTUS	transcript	9529462	9529659	.	+	.	transcript_id "Ledus.S1G097500.t1"; gene_id "Ledus.S1G097500"
Ledus.S1	AUGUSTUS	start_codon	9529462	9529464	.	+	0	transcript_id "Ledus.S1G097500.t1"; gene_id "Ledus.S1G097500"
Ledus.S1	AUGUSTUS	CDS	9529462	9529659	0.89	+	0	transcript_id "Ledus.S1G097500.t1"; gene_id "Ledus.S1G097500"
Ledus.S1	AUGUSTUS	exon	9529462	9529659	.	+	.	transcript_id "Ledus.S1G097500.t1"; gene_id "Ledus.S1G097500"
Ledus.S1	AUGUSTUS	stop_codon	9529660	9529662	.	+	0	transcript_id "Ledus.S1G097500.t1"; gene_id "Ledus.S1G097500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7743.t1 is derived from g12414.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5971292	5974305	.	-	.	Ledus.S5G052100
Ledus.S5	AUGUSTUS	transcript	5971292	5974305	.	-	.	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	stop_codon	5971289	5971291	.	-	0	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	CDS	5971292	5971395	1	-	2	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	exon	5971292	5971395	.	-	.	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	intron	5971396	5971580	.	-	.	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	CDS	5971581	5971651	1	-	1	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	exon	5971581	5971651	.	-	.	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	intron	5971652	5971750	.	-	.	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	CDS	5971751	5971781	0.99	-	2	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	exon	5971751	5971781	.	-	.	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	intron	5971782	5971855	.	-	.	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	CDS	5971856	5973384	0.94	-	1	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	exon	5971856	5973384	.	-	.	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	intron	5973385	5973694	.	-	.	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	CDS	5973695	5973934	0.75	-	1	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	exon	5973695	5973934	.	-	.	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	intron	5973935	5974090	.	-	.	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	CDS	5974091	5974305	0.67	-	0	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	exon	5974091	5974305	.	-	.	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
Ledus.S5	AUGUSTUS	start_codon	5974303	5974305	.	-	0	transcript_id "Ledus.S5G052100.t1"; gene_id "Ledus.S5G052100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12764.t1 is derived from g6386.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14353607	14354053	.	-	.	Ledus.S4G192000
Ledus.S4	AUGUSTUS	transcript	14353607	14354053	.	-	.	transcript_id "Ledus.S4G192000.t1"; gene_id "Ledus.S4G192000"
Ledus.S4	AUGUSTUS	stop_codon	14353604	14353606	.	-	0	transcript_id "Ledus.S4G192000.t1"; gene_id "Ledus.S4G192000"
Ledus.S4	AUGUSTUS	CDS	14353607	14353638	0.99	-	2	transcript_id "Ledus.S4G192000.t1"; gene_id "Ledus.S4G192000"
Ledus.S4	AUGUSTUS	exon	14353607	14353638	.	-	.	transcript_id "Ledus.S4G192000.t1"; gene_id "Ledus.S4G192000"
Ledus.S4	AUGUSTUS	intron	14353639	14353725	.	-	.	transcript_id "Ledus.S4G192000.t1"; gene_id "Ledus.S4G192000"
Ledus.S4	AUGUSTUS	CDS	14353726	14353883	0.99	-	1	transcript_id "Ledus.S4G192000.t1"; gene_id "Ledus.S4G192000"
Ledus.S4	AUGUSTUS	exon	14353726	14353883	.	-	.	transcript_id "Ledus.S4G192000.t1"; gene_id "Ledus.S4G192000"
Ledus.S4	AUGUSTUS	intron	14353884	14353967	.	-	.	transcript_id "Ledus.S4G192000.t1"; gene_id "Ledus.S4G192000"
Ledus.S4	AUGUSTUS	CDS	14353968	14354053	0.91	-	0	transcript_id "Ledus.S4G192000.t1"; gene_id "Ledus.S4G192000"
Ledus.S4	AUGUSTUS	exon	14353968	14354053	.	-	.	transcript_id "Ledus.S4G192000.t1"; gene_id "Ledus.S4G192000"
Ledus.S4	AUGUSTUS	start_codon	14354051	14354053	.	-	0	transcript_id "Ledus.S4G192000.t1"; gene_id "Ledus.S4G192000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg12425.t1 is derived from g6046.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11966808	11968993	.	-	.	Ledus.S4G158100
Ledus.S4	AUGUSTUS	transcript	11966808	11968993	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	stop_codon	11966805	11966807	.	-	0	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11966808	11966906	0.62	-	0	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11966808	11966906	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11966907	11967053	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11967054	11967086	1	-	0	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11967054	11967086	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11967087	11967164	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11967165	11967287	1	-	0	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11967165	11967287	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11967288	11967389	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11967390	11967449	0.99	-	0	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11967390	11967449	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11967450	11967527	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11967528	11967608	1	-	0	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11967528	11967608	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11967609	11967739	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11967740	11967830	0.99	-	1	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11967740	11967830	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11967831	11967955	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11967956	11968027	0.99	-	1	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11967956	11968027	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11968028	11968102	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11968103	11968203	1	-	0	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11968103	11968203	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11968204	11968430	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11968431	11968538	1	-	0	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11968431	11968538	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11968539	11968684	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11968685	11968993	0.85	-	0	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11968685	11968993	.	-	.	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	start_codon	11968991	11968993	.	-	0	transcript_id "Ledus.S4G158100.t1"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	transcript	11966808	11968993	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	stop_codon	11966805	11966807	.	-	0	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11966808	11966906	0.55	-	0	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11966808	11966906	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11966907	11967053	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11967054	11967086	0.99	-	0	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11967054	11967086	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11967087	11967164	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11967165	11967287	0.98	-	0	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11967165	11967287	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11967288	11967389	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11967390	11967449	0.98	-	0	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11967390	11967449	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11967450	11967527	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11967528	11967608	1	-	0	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11967528	11967608	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11967609	11967739	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11967740	11967830	0.98	-	1	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11967740	11967830	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11967831	11967955	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11967956	11968027	1	-	1	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11967956	11968027	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11968028	11968102	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11968103	11968203	1	-	0	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11968103	11968203	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11968204	11968445	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11968446	11968538	1	-	0	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11968446	11968538	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	intron	11968539	11968684	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	CDS	11968685	11968993	0.88	-	0	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	exon	11968685	11968993	.	-	.	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
Ledus.S4	AUGUSTUS	start_codon	11968991	11968993	.	-	0	transcript_id "Ledus.S4G158100.t2"; gene_id "Ledus.S4G158100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8501.t1 is derived from g13173.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12301022	12301985	.	+	.	Ledus.S5G127900
Ledus.S5	AUGUSTUS	transcript	12301022	12301985	.	+	.	transcript_id "Ledus.S5G127900.t1"; gene_id "Ledus.S5G127900"
Ledus.S5	AUGUSTUS	start_codon	12301022	12301024	.	+	0	transcript_id "Ledus.S5G127900.t1"; gene_id "Ledus.S5G127900"
Ledus.S5	AUGUSTUS	CDS	12301022	12301628	0.83	+	0	transcript_id "Ledus.S5G127900.t1"; gene_id "Ledus.S5G127900"
Ledus.S5	AUGUSTUS	exon	12301022	12301628	.	+	.	transcript_id "Ledus.S5G127900.t1"; gene_id "Ledus.S5G127900"
Ledus.S5	AUGUSTUS	intron	12301629	12301806	.	+	.	transcript_id "Ledus.S5G127900.t1"; gene_id "Ledus.S5G127900"
Ledus.S5	AUGUSTUS	CDS	12301807	12301985	0.94	+	2	transcript_id "Ledus.S5G127900.t1"; gene_id "Ledus.S5G127900"
Ledus.S5	AUGUSTUS	exon	12301807	12301985	.	+	.	transcript_id "Ledus.S5G127900.t1"; gene_id "Ledus.S5G127900"
Ledus.S5	AUGUSTUS	stop_codon	12301986	12301988	.	+	0	transcript_id "Ledus.S5G127900.t1"; gene_id "Ledus.S5G127900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg3267.t1 is derived from g702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7186754	7192936	.	+	.	Ledus.S1G068800
Ledus.S1	AUGUSTUS	transcript	7186754	7192936	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	start_codon	7186754	7186756	.	+	0	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7186754	7186766	0.99	+	0	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7186754	7186766	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7186767	7186909	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7186910	7187172	1	+	2	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7186910	7187172	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7187173	7187261	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7187262	7187400	1	+	0	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7187262	7187400	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7187401	7187489	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7187490	7187572	1	+	2	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7187490	7187572	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7187573	7187689	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7187690	7187886	0.98	+	0	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7187690	7187886	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7187887	7187994	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7187995	7188121	0.99	+	1	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7187995	7188121	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7188122	7188280	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7188281	7188363	1	+	0	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7188281	7188363	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7188364	7188588	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7188589	7188795	1	+	1	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7188589	7188795	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7188796	7188965	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7188966	7189331	0.85	+	1	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7188966	7189331	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7189332	7189408	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7189409	7189619	1	+	1	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7189409	7189619	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7189620	7189700	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7189701	7189901	0.91	+	0	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7189701	7189901	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7189902	7190022	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7190023	7190244	0.51	+	0	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7190023	7190244	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7190245	7190323	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7190324	7190413	1	+	0	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7190324	7190413	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7190414	7190508	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7190509	7190726	1	+	0	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7190509	7190726	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7190727	7190817	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7190818	7191315	1	+	1	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7190818	7191315	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7191316	7191415	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7191416	7191496	1	+	1	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7191416	7191496	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7191497	7191580	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7191581	7191666	1	+	1	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7191581	7191666	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7191667	7191743	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7191744	7192340	1	+	2	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7191744	7192340	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7192341	7192424	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7192425	7192599	1	+	2	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7192425	7192599	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7192600	7192681	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7192682	7192747	1	+	1	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7192682	7192747	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7192748	7192836	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7192837	7192936	0.93	+	1	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7192837	7192936	.	+	.	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	stop_codon	7192937	7192939	.	+	0	transcript_id "Ledus.S1G068800.t1"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	transcript	7186754	7192936	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	start_codon	7186754	7186756	.	+	0	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7186754	7186766	1	+	0	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7186754	7186766	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7186767	7186909	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7186910	7187172	1	+	2	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7186910	7187172	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7187173	7187261	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7187262	7187400	1	+	0	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7187262	7187400	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7187401	7187489	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7187490	7187572	1	+	2	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7187490	7187572	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7187573	7187689	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7187690	7187886	0.91	+	0	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7187690	7187886	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7187887	7187994	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7187995	7188121	0.95	+	1	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7187995	7188121	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7188122	7188280	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7188281	7188363	1	+	0	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7188281	7188363	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7188364	7188588	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7188589	7188795	1	+	1	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7188589	7188795	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7188796	7189000	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7189001	7189013	0.49	+	1	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7189001	7189013	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7189014	7189152	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7189153	7189331	0.51	+	0	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7189153	7189331	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7189332	7189408	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7189409	7189619	1	+	1	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7189409	7189619	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7189620	7189700	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7189701	7189901	0.92	+	0	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7189701	7189901	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7189902	7190022	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7190023	7190244	0.6	+	0	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7190023	7190244	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7190245	7190323	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7190324	7190413	1	+	0	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7190324	7190413	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7190414	7190508	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7190509	7190726	1	+	0	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7190509	7190726	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7190727	7190817	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7190818	7191315	0.99	+	1	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7190818	7191315	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7191316	7191415	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7191416	7191496	1	+	1	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7191416	7191496	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7191497	7191580	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7191581	7191666	1	+	1	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7191581	7191666	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7191667	7191743	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7191744	7192340	1	+	2	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7191744	7192340	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7192341	7192424	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7192425	7192599	1	+	2	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7192425	7192599	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7192600	7192681	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7192682	7192747	1	+	1	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7192682	7192747	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	intron	7192748	7192836	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	CDS	7192837	7192936	0.95	+	1	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	exon	7192837	7192936	.	+	.	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
Ledus.S1	AUGUSTUS	stop_codon	7192937	7192939	.	+	0	transcript_id "Ledus.S1G068800.t2"; gene_id "Ledus.S1G068800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11181.t1 is derived from g4799.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2470017	2471892	.	-	.	Ledus.S4G033700
Ledus.S4	AUGUSTUS	transcript	2470017	2471892	.	-	.	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	stop_codon	2470014	2470016	.	-	0	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	CDS	2470017	2470204	0.97	-	2	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	exon	2470017	2470204	.	-	.	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	intron	2470205	2470312	.	-	.	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	CDS	2470313	2470653	1	-	1	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	exon	2470313	2470653	.	-	.	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	intron	2470654	2470746	.	-	.	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	CDS	2470747	2471039	1	-	0	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	exon	2470747	2471039	.	-	.	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	intron	2471040	2471149	.	-	.	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	CDS	2471150	2471444	0.81	-	1	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	exon	2471150	2471444	.	-	.	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	intron	2471445	2471527	.	-	.	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	CDS	2471528	2471892	0.87	-	0	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	exon	2471528	2471892	.	-	.	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
Ledus.S4	AUGUSTUS	start_codon	2471890	2471892	.	-	0	transcript_id "Ledus.S4G033700.t1"; gene_id "Ledus.S4G033700"
# This transcript jg5262.t2 is derived from g2701.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5263.t1 is derived from g2702.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22778201	22782058	.	+	.	Ledus.S1G268400
Ledus.S1	AUGUSTUS	transcript	22778201	22782058	.	+	.	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	start_codon	22778201	22778203	.	+	0	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	CDS	22778201	22778455	0.57	+	0	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	exon	22778201	22778455	.	+	.	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	intron	22778456	22778738	.	+	.	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	CDS	22778739	22779921	0.55	+	0	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	exon	22778739	22779921	.	+	.	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	intron	22779922	22780178	.	+	.	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	CDS	22780179	22781044	0.66	+	2	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	exon	22780179	22781044	.	+	.	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	intron	22781045	22781252	.	+	.	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	CDS	22781253	22781399	1	+	0	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	exon	22781253	22781399	.	+	.	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	intron	22781400	22781496	.	+	.	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	CDS	22781497	22781577	1	+	0	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	exon	22781497	22781577	.	+	.	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	intron	22781578	22781746	.	+	.	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	CDS	22781747	22782058	0.97	+	0	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	exon	22781747	22782058	.	+	.	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
Ledus.S1	AUGUSTUS	stop_codon	22782059	22782061	.	+	0	transcript_id "Ledus.S1G268400.t1"; gene_id "Ledus.S1G268400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5618.t1 is derived from g3057.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	25413739	25415430	.	-	.	Ledus.S1G303900
Ledus.S1	AUGUSTUS	transcript	25413739	25415430	.	-	.	transcript_id "Ledus.S1G303900.t1"; gene_id "Ledus.S1G303900"
Ledus.S1	AUGUSTUS	stop_codon	25413736	25413738	.	-	0	transcript_id "Ledus.S1G303900.t1"; gene_id "Ledus.S1G303900"
Ledus.S1	AUGUSTUS	CDS	25413739	25415430	0.84	-	0	transcript_id "Ledus.S1G303900.t1"; gene_id "Ledus.S1G303900"
Ledus.S1	AUGUSTUS	exon	25413739	25415430	.	-	.	transcript_id "Ledus.S1G303900.t1"; gene_id "Ledus.S1G303900"
Ledus.S1	AUGUSTUS	start_codon	25415428	25415430	.	-	0	transcript_id "Ledus.S1G303900.t1"; gene_id "Ledus.S1G303900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3148.t1 is derived from g583.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6327788	6328273	.	+	.	Ledus.S1G056900
Ledus.S1	AUGUSTUS	transcript	6327788	6328273	.	+	.	transcript_id "Ledus.S1G056900.t1"; gene_id "Ledus.S1G056900"
Ledus.S1	AUGUSTUS	start_codon	6327788	6327790	.	+	0	transcript_id "Ledus.S1G056900.t1"; gene_id "Ledus.S1G056900"
Ledus.S1	AUGUSTUS	CDS	6327788	6327890	0.54	+	0	transcript_id "Ledus.S1G056900.t1"; gene_id "Ledus.S1G056900"
Ledus.S1	AUGUSTUS	exon	6327788	6327890	.	+	.	transcript_id "Ledus.S1G056900.t1"; gene_id "Ledus.S1G056900"
Ledus.S1	AUGUSTUS	intron	6327891	6327971	.	+	.	transcript_id "Ledus.S1G056900.t1"; gene_id "Ledus.S1G056900"
Ledus.S1	AUGUSTUS	CDS	6327972	6328273	0.6	+	2	transcript_id "Ledus.S1G056900.t1"; gene_id "Ledus.S1G056900"
Ledus.S1	AUGUSTUS	exon	6327972	6328273	.	+	.	transcript_id "Ledus.S1G056900.t1"; gene_id "Ledus.S1G056900"
Ledus.S1	AUGUSTUS	stop_codon	6328274	6328276	.	+	0	transcript_id "Ledus.S1G056900.t1"; gene_id "Ledus.S1G056900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9529.t1 is derived from g10559.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	7600569	7602665	.	+	.	Ledus.S3G100600
Ledus.S3	AUGUSTUS	transcript	7600569	7602665	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	start_codon	7600569	7600571	.	+	0	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	CDS	7600569	7600633	0.69	+	0	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	exon	7600569	7600633	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	intron	7600634	7600726	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	CDS	7600727	7600881	1	+	1	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	exon	7600727	7600881	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	intron	7600882	7600962	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	CDS	7600963	7601247	1	+	2	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	exon	7600963	7601247	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	intron	7601248	7601386	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	CDS	7601387	7601516	1	+	2	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	exon	7601387	7601516	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	intron	7601517	7601633	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	CDS	7601634	7601738	0.62	+	1	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	exon	7601634	7601738	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	intron	7601739	7601825	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	CDS	7601826	7601928	0.7	+	1	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	exon	7601826	7601928	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	intron	7601929	7602023	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	CDS	7602024	7602149	1	+	0	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	exon	7602024	7602149	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	intron	7602150	7602312	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	CDS	7602313	7602500	0.99	+	0	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	exon	7602313	7602500	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	intron	7602501	7602592	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	CDS	7602593	7602665	0.99	+	1	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	exon	7602593	7602665	.	+	.	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
Ledus.S3	AUGUSTUS	stop_codon	7602666	7602668	.	+	0	transcript_id "Ledus.S3G100600.t1"; gene_id "Ledus.S3G100600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2509.t1 is derived from g9372.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	18523098	18523940	.	+	.	Ledus.S2G239100
Ledus.S2	AUGUSTUS	transcript	18523098	18523940	.	+	.	transcript_id "Ledus.S2G239100.t1"; gene_id "Ledus.S2G239100"
Ledus.S2	AUGUSTUS	start_codon	18523098	18523100	.	+	0	transcript_id "Ledus.S2G239100.t1"; gene_id "Ledus.S2G239100"
Ledus.S2	AUGUSTUS	CDS	18523098	18523940	0.6	+	0	transcript_id "Ledus.S2G239100.t1"; gene_id "Ledus.S2G239100"
Ledus.S2	AUGUSTUS	exon	18523098	18523940	.	+	.	transcript_id "Ledus.S2G239100.t1"; gene_id "Ledus.S2G239100"
Ledus.S2	AUGUSTUS	stop_codon	18523941	18523943	.	+	0	transcript_id "Ledus.S2G239100.t1"; gene_id "Ledus.S2G239100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7575.t1 is derived from g12246.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4126382	4127968	.	-	.	Ledus.S5G035300
Ledus.S5	AUGUSTUS	transcript	4126382	4127968	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	stop_codon	4126379	4126381	.	-	0	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	CDS	4126382	4126417	1	-	0	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	exon	4126382	4126417	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	intron	4126418	4126513	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	CDS	4126514	4126600	1	-	0	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	exon	4126514	4126600	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	intron	4126601	4126689	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	CDS	4126690	4126779	1	-	0	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	exon	4126690	4126779	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	intron	4126780	4126870	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	CDS	4126871	4126976	1	-	1	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	exon	4126871	4126976	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	intron	4126977	4127130	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	CDS	4127131	4127225	1	-	0	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	exon	4127131	4127225	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	intron	4127226	4127338	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	CDS	4127339	4127422	1	-	0	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	exon	4127339	4127422	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	intron	4127423	4127594	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	CDS	4127595	4127677	1	-	2	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	exon	4127595	4127677	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	intron	4127678	4127943	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	CDS	4127944	4127968	0.95	-	0	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	exon	4127944	4127968	.	-	.	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
Ledus.S5	AUGUSTUS	start_codon	4127966	4127968	.	-	0	transcript_id "Ledus.S5G035300.t1"; gene_id "Ledus.S5G035300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg12880.t1 is derived from g4453.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C10	AUGUSTUS	gene	321659	324338	.	-	.	Ledus.C10G002300
Ledus.C10	AUGUSTUS	transcript	321659	324338	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	stop_codon	321656	321658	.	-	0	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	321659	321671	1	-	1	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	321659	321671	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	321672	322083	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	322084	322214	1	-	0	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	322084	322214	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	322215	322287	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	322288	322395	1	-	0	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	322288	322395	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	322396	322483	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	322484	322570	1	-	0	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	322484	322570	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	322571	322661	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	322662	322741	1	-	2	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	322662	322741	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	322742	322837	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	322838	322905	1	-	1	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	322838	322905	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	322906	322987	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	322988	323205	1	-	0	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	322988	323205	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	323206	323288	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	323289	323355	1	-	1	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	323289	323355	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	323356	323429	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	323430	323505	1	-	2	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	323430	323505	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	323506	323584	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	323585	323651	1	-	0	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	323585	323651	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	323652	323736	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	323737	323835	1	-	0	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	323737	323835	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	323836	323968	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	323969	324051	1	-	2	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	323969	324051	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	324052	324121	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	324122	324338	0.45	-	0	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	324122	324338	.	-	.	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	start_codon	324336	324338	.	-	0	transcript_id "Ledus.C10G002300.t1"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	transcript	321659	323754	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	stop_codon	321656	321658	.	-	0	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	321659	321671	1	-	1	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	321659	321671	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	321672	322083	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	322084	322214	1	-	0	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	322084	322214	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	322215	322287	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	322288	322395	1	-	0	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	322288	322395	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	322396	322483	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	322484	322570	1	-	0	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	322484	322570	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	322571	322661	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	322662	322741	1	-	2	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	322662	322741	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	322742	322837	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	322838	322905	1	-	1	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	322838	322905	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	322906	322987	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	322988	323205	1	-	0	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	322988	323205	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	323206	323288	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	323289	323355	1	-	1	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	323289	323355	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	323356	323429	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	323430	323505	1	-	2	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	323430	323505	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	323506	323584	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	323585	323651	1	-	0	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	323585	323651	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	323652	323736	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	323737	323754	0.48	-	0	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	323737	323754	.	-	.	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	start_codon	323752	323754	.	-	0	transcript_id "Ledus.C10G002300.t2"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	transcript	323826	324338	.	-	.	transcript_id "Ledus.C10G002300.t3"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	stop_codon	323823	323825	.	-	0	transcript_id "Ledus.C10G002300.t3"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	323826	323879	0.87	-	0	transcript_id "Ledus.C10G002300.t3"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	323826	323879	.	-	.	transcript_id "Ledus.C10G002300.t3"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	323880	323968	.	-	.	transcript_id "Ledus.C10G002300.t3"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	323969	324051	1	-	2	transcript_id "Ledus.C10G002300.t3"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	323969	324051	.	-	.	transcript_id "Ledus.C10G002300.t3"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	intron	324052	324121	.	-	.	transcript_id "Ledus.C10G002300.t3"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	CDS	324122	324338	0.49	-	0	transcript_id "Ledus.C10G002300.t3"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	exon	324122	324338	.	-	.	transcript_id "Ledus.C10G002300.t3"; gene_id "Ledus.C10G002300"
Ledus.C10	AUGUSTUS	start_codon	324336	324338	.	-	0	transcript_id "Ledus.C10G002300.t3"; gene_id "Ledus.C10G002300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg401.t1 is derived from g7262.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2228213	2230712	.	-	.	Ledus.S2G028300
Ledus.S2	AUGUSTUS	transcript	2228213	2230712	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	stop_codon	2228210	2228212	.	-	0	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	CDS	2228213	2228298	1	-	2	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	exon	2228213	2228298	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	intron	2228299	2228379	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	CDS	2228380	2228515	1	-	0	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	exon	2228380	2228515	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	intron	2228516	2228622	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	CDS	2228623	2228692	0.98	-	1	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	exon	2228623	2228692	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	intron	2228693	2228872	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	CDS	2228873	2228930	1	-	2	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	exon	2228873	2228930	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	intron	2228931	2229012	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	CDS	2229013	2229106	1	-	0	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	exon	2229013	2229106	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	intron	2229107	2229282	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	CDS	2229283	2229483	1	-	0	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	exon	2229283	2229483	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	intron	2229484	2229601	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	CDS	2229602	2229762	0.83	-	2	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	exon	2229602	2229762	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	intron	2229763	2229874	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	CDS	2229875	2229935	0.83	-	0	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	exon	2229875	2229935	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	intron	2229936	2230042	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	CDS	2230043	2230326	0.98	-	2	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	exon	2230043	2230326	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	intron	2230327	2230407	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	CDS	2230408	2230571	0.92	-	1	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	exon	2230408	2230571	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	intron	2230572	2230647	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	CDS	2230648	2230712	0.52	-	0	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	exon	2230648	2230712	.	-	.	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
Ledus.S2	AUGUSTUS	start_codon	2230710	2230712	.	-	0	transcript_id "Ledus.S2G028300.t1"; gene_id "Ledus.S2G028300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2288.t1 is derived from g9151.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17029055	17030962	.	+	.	Ledus.S2G217000
Ledus.S2	AUGUSTUS	transcript	17029055	17030962	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	start_codon	17029055	17029057	.	+	0	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	CDS	17029055	17029330	1	+	0	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	exon	17029055	17029330	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	intron	17029331	17029544	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	CDS	17029545	17029676	1	+	0	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	exon	17029545	17029676	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	intron	17029677	17029779	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	CDS	17029780	17029830	0.68	+	0	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	exon	17029780	17029830	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	intron	17029831	17029938	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	CDS	17029939	17030035	0.73	+	0	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	exon	17029939	17030035	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	intron	17030036	17030119	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	CDS	17030120	17030166	1	+	2	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	exon	17030120	17030166	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	intron	17030167	17030321	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	CDS	17030322	17030538	1	+	0	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	exon	17030322	17030538	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	intron	17030539	17030638	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	CDS	17030639	17030808	1	+	2	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	exon	17030639	17030808	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	intron	17030809	17030896	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	CDS	17030897	17030962	0.99	+	0	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	exon	17030897	17030962	.	+	.	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
Ledus.S2	AUGUSTUS	stop_codon	17030963	17030965	.	+	0	transcript_id "Ledus.S2G217000.t1"; gene_id "Ledus.S2G217000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4751.t1 is derived from g2189.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	19601172	19602766	.	-	.	Ledus.S1G217200
Ledus.S1	AUGUSTUS	transcript	19601172	19602766	.	-	.	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	stop_codon	19601169	19601171	.	-	0	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	CDS	19601172	19601746	1	-	2	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	exon	19601172	19601746	.	-	.	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	intron	19601747	19601825	.	-	.	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	CDS	19601826	19601940	1	-	0	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	exon	19601826	19601940	.	-	.	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	intron	19601941	19602016	.	-	.	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	CDS	19602017	19602191	1	-	1	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	exon	19602017	19602191	.	-	.	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	intron	19602192	19602389	.	-	.	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	CDS	19602390	19602766	1	-	0	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	exon	19602390	19602766	.	-	.	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
Ledus.S1	AUGUSTUS	start_codon	19602764	19602766	.	-	0	transcript_id "Ledus.S1G217200.t1"; gene_id "Ledus.S1G217200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4980.t1 is derived from g2418.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	20964504	20968160	.	+	.	Ledus.S1G240100
Ledus.S1	AUGUSTUS	transcript	20964504	20968160	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	start_codon	20964504	20964506	.	+	0	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20964504	20964736	0.48	+	0	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20964504	20964736	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20964737	20965010	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20965011	20965088	1	+	1	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20965011	20965088	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20965089	20965173	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20965174	20965287	1	+	1	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20965174	20965287	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20965288	20965391	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20965392	20965443	1	+	1	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20965392	20965443	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20965444	20965533	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20965534	20965671	0.99	+	0	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20965534	20965671	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20965672	20965778	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20965779	20965877	0.98	+	0	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20965779	20965877	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20965878	20965985	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20965986	20966083	1	+	0	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20965986	20966083	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20966084	20966175	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20966176	20966283	1	+	1	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20966176	20966283	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20966284	20966370	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20966371	20966452	1	+	1	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20966371	20966452	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20966453	20966535	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20966536	20966583	0.87	+	0	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20966536	20966583	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20966584	20966811	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20966812	20966918	0.82	+	0	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20966812	20966918	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20966919	20967043	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20967044	20967054	1	+	1	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20967044	20967054	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20967055	20967138	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20967139	20967914	1	+	2	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20967139	20967914	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	intron	20967915	20968001	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	CDS	20968002	20968160	0.96	+	0	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	exon	20968002	20968160	.	+	.	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
Ledus.S1	AUGUSTUS	stop_codon	20968161	20968163	.	+	0	transcript_id "Ledus.S1G240100.t1"; gene_id "Ledus.S1G240100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1976.t1 is derived from g8839.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13996347	13997442	.	-	.	Ledus.S2G185800
Ledus.S2	AUGUSTUS	transcript	13996347	13997442	.	-	.	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	stop_codon	13996344	13996346	.	-	0	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	CDS	13996347	13996380	0.34	-	1	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	exon	13996347	13996380	.	-	.	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	intron	13996381	13996479	.	-	.	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	CDS	13996480	13996517	0.34	-	0	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	exon	13996480	13996517	.	-	.	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	intron	13996518	13996639	.	-	.	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	CDS	13996640	13996741	0.34	-	0	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	exon	13996640	13996741	.	-	.	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	intron	13996742	13996872	.	-	.	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	CDS	13996873	13997442	0.99	-	0	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	exon	13996873	13997442	.	-	.	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
Ledus.S2	AUGUSTUS	start_codon	13997440	13997442	.	-	0	transcript_id "Ledus.S2G185800.t1"; gene_id "Ledus.S2G185800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2865.t1 is derived from g299.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4243165	4244289	.	-	.	Ledus.S1G028600
Ledus.S1	AUGUSTUS	transcript	4243165	4244289	.	-	.	transcript_id "Ledus.S1G028600.t1"; gene_id "Ledus.S1G028600"
Ledus.S1	AUGUSTUS	stop_codon	4243162	4243164	.	-	0	transcript_id "Ledus.S1G028600.t1"; gene_id "Ledus.S1G028600"
Ledus.S1	AUGUSTUS	CDS	4243165	4244289	0.62	-	0	transcript_id "Ledus.S1G028600.t1"; gene_id "Ledus.S1G028600"
Ledus.S1	AUGUSTUS	exon	4243165	4244289	.	-	.	transcript_id "Ledus.S1G028600.t1"; gene_id "Ledus.S1G028600"
Ledus.S1	AUGUSTUS	start_codon	4244287	4244289	.	-	0	transcript_id "Ledus.S1G028600.t1"; gene_id "Ledus.S1G028600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4547.t1 is derived from g1984.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	17616408	17619164	.	+	.	Ledus.S1G196800
Ledus.S1	AUGUSTUS	transcript	17616408	17619164	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	start_codon	17616408	17616410	.	+	0	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	CDS	17616408	17616515	1	+	0	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	exon	17616408	17616515	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	intron	17616516	17616611	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	CDS	17616612	17616718	1	+	0	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	exon	17616612	17616718	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	intron	17616719	17616811	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	CDS	17616812	17616890	1	+	1	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	exon	17616812	17616890	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	intron	17616891	17616983	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	CDS	17616984	17617175	1	+	0	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	exon	17616984	17617175	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	intron	17617176	17617325	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	CDS	17617326	17617424	1	+	0	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	exon	17617326	17617424	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	intron	17617425	17617546	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	CDS	17617547	17617715	1	+	0	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	exon	17617547	17617715	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	intron	17617716	17617828	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	CDS	17617829	17617935	1	+	2	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	exon	17617829	17617935	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	intron	17617936	17618100	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	CDS	17618101	17618240	1	+	0	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	exon	17618101	17618240	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	intron	17618241	17618402	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	CDS	17618403	17618475	1	+	1	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	exon	17618403	17618475	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	intron	17618476	17618596	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	CDS	17618597	17618709	1	+	0	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	exon	17618597	17618709	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	intron	17618710	17618824	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	CDS	17618825	17618945	1	+	1	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	exon	17618825	17618945	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	intron	17618946	17619044	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	CDS	17619045	17619164	0.87	+	0	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	exon	17619045	17619164	.	+	.	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
Ledus.S1	AUGUSTUS	stop_codon	17619165	17619167	.	+	0	transcript_id "Ledus.S1G196800.t1"; gene_id "Ledus.S1G196800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg433.t1 is derived from g7294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2490624	2491488	.	+	.	Ledus.S2G031500
Ledus.S2	AUGUSTUS	transcript	2490624	2491488	.	+	.	transcript_id "Ledus.S2G031500.t1"; gene_id "Ledus.S2G031500"
Ledus.S2	AUGUSTUS	start_codon	2490624	2490626	.	+	0	transcript_id "Ledus.S2G031500.t1"; gene_id "Ledus.S2G031500"
Ledus.S2	AUGUSTUS	CDS	2490624	2490702	1	+	0	transcript_id "Ledus.S2G031500.t1"; gene_id "Ledus.S2G031500"
Ledus.S2	AUGUSTUS	exon	2490624	2490702	.	+	.	transcript_id "Ledus.S2G031500.t1"; gene_id "Ledus.S2G031500"
Ledus.S2	AUGUSTUS	intron	2490703	2490777	.	+	.	transcript_id "Ledus.S2G031500.t1"; gene_id "Ledus.S2G031500"
Ledus.S2	AUGUSTUS	CDS	2490778	2491235	1	+	2	transcript_id "Ledus.S2G031500.t1"; gene_id "Ledus.S2G031500"
Ledus.S2	AUGUSTUS	exon	2490778	2491235	.	+	.	transcript_id "Ledus.S2G031500.t1"; gene_id "Ledus.S2G031500"
Ledus.S2	AUGUSTUS	intron	2491236	2491353	.	+	.	transcript_id "Ledus.S2G031500.t1"; gene_id "Ledus.S2G031500"
Ledus.S2	AUGUSTUS	CDS	2491354	2491488	1	+	0	transcript_id "Ledus.S2G031500.t1"; gene_id "Ledus.S2G031500"
Ledus.S2	AUGUSTUS	exon	2491354	2491488	.	+	.	transcript_id "Ledus.S2G031500.t1"; gene_id "Ledus.S2G031500"
Ledus.S2	AUGUSTUS	stop_codon	2491489	2491491	.	+	0	transcript_id "Ledus.S2G031500.t1"; gene_id "Ledus.S2G031500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6534.t1 is derived from g3977.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32152935	32155352	.	-	.	Ledus.S1G395500
Ledus.S1	AUGUSTUS	transcript	32152935	32155352	.	-	.	transcript_id "Ledus.S1G395500.t1"; gene_id "Ledus.S1G395500"
Ledus.S1	AUGUSTUS	stop_codon	32152932	32152934	.	-	0	transcript_id "Ledus.S1G395500.t1"; gene_id "Ledus.S1G395500"
Ledus.S1	AUGUSTUS	CDS	32152935	32155352	0.74	-	0	transcript_id "Ledus.S1G395500.t1"; gene_id "Ledus.S1G395500"
Ledus.S1	AUGUSTUS	exon	32152935	32155352	.	-	.	transcript_id "Ledus.S1G395500.t1"; gene_id "Ledus.S1G395500"
Ledus.S1	AUGUSTUS	start_codon	32155350	32155352	.	-	0	transcript_id "Ledus.S1G395500.t1"; gene_id "Ledus.S1G395500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8056.t1 is derived from g12727.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8856662	8857802	.	+	.	Ledus.S5G083400
Ledus.S5	AUGUSTUS	transcript	8856662	8857802	.	+	.	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	start_codon	8856662	8856664	.	+	0	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	CDS	8856662	8857184	0.99	+	0	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	exon	8856662	8857184	.	+	.	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	intron	8857185	8857270	.	+	.	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	CDS	8857271	8857342	1	+	2	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	exon	8857271	8857342	.	+	.	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	intron	8857343	8857436	.	+	.	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	CDS	8857437	8857649	1	+	2	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	exon	8857437	8857649	.	+	.	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	intron	8857650	8857722	.	+	.	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	CDS	8857723	8857802	1	+	2	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	exon	8857723	8857802	.	+	.	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
Ledus.S5	AUGUSTUS	stop_codon	8857803	8857805	.	+	0	transcript_id "Ledus.S5G083400.t1"; gene_id "Ledus.S5G083400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1870.t1 is derived from g8733.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	13047960	13048313	.	+	.	Ledus.S2G175200
Ledus.S2	AUGUSTUS	transcript	13047960	13048313	.	+	.	transcript_id "Ledus.S2G175200.t1"; gene_id "Ledus.S2G175200"
Ledus.S2	AUGUSTUS	start_codon	13047960	13047962	.	+	0	transcript_id "Ledus.S2G175200.t1"; gene_id "Ledus.S2G175200"
Ledus.S2	AUGUSTUS	CDS	13047960	13048313	0.98	+	0	transcript_id "Ledus.S2G175200.t1"; gene_id "Ledus.S2G175200"
Ledus.S2	AUGUSTUS	exon	13047960	13048313	.	+	.	transcript_id "Ledus.S2G175200.t1"; gene_id "Ledus.S2G175200"
Ledus.S2	AUGUSTUS	stop_codon	13048314	13048316	.	+	0	transcript_id "Ledus.S2G175200.t1"; gene_id "Ledus.S2G175200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2400.t1 is derived from g9263.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17892344	17892826	.	+	.	Ledus.S2G228200
Ledus.S2	AUGUSTUS	transcript	17892344	17892826	.	+	.	transcript_id "Ledus.S2G228200.t1"; gene_id "Ledus.S2G228200"
Ledus.S2	AUGUSTUS	start_codon	17892344	17892346	.	+	0	transcript_id "Ledus.S2G228200.t1"; gene_id "Ledus.S2G228200"
Ledus.S2	AUGUSTUS	CDS	17892344	17892826	1	+	0	transcript_id "Ledus.S2G228200.t1"; gene_id "Ledus.S2G228200"
Ledus.S2	AUGUSTUS	exon	17892344	17892826	.	+	.	transcript_id "Ledus.S2G228200.t1"; gene_id "Ledus.S2G228200"
Ledus.S2	AUGUSTUS	stop_codon	17892827	17892829	.	+	0	transcript_id "Ledus.S2G228200.t1"; gene_id "Ledus.S2G228200"
# This transcript jg175.t2 is derived from g7036.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg176.t1 is derived from g7037.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	544231	546391	.	+	.	Ledus.S2G005800
Ledus.S2	AUGUSTUS	transcript	544231	546391	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	start_codon	544231	544233	.	+	0	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	CDS	544231	544456	0.92	+	0	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	exon	544231	544456	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	intron	544457	544570	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	CDS	544571	544743	1	+	2	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	exon	544571	544743	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	intron	544744	545118	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	CDS	545119	545208	1	+	0	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	exon	545119	545208	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	intron	545209	545309	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	CDS	545310	545478	1	+	0	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	exon	545310	545478	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	intron	545479	545621	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	CDS	545622	545812	1	+	2	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	exon	545622	545812	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	intron	545813	545932	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	CDS	545933	546058	0.99	+	0	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	exon	545933	546058	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	intron	546059	546162	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	CDS	546163	546251	0.99	+	0	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	exon	546163	546251	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	intron	546252	546333	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	CDS	546334	546391	0.8	+	1	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	exon	546334	546391	.	+	.	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
Ledus.S2	AUGUSTUS	stop_codon	546392	546394	.	+	0	transcript_id "Ledus.S2G005800.t1"; gene_id "Ledus.S2G005800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7291.t1 is derived from g11962.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	791186	791815	.	+	.	Ledus.S5G006900
Ledus.S5	AUGUSTUS	transcript	791186	791815	.	+	.	transcript_id "Ledus.S5G006900.t1"; gene_id "Ledus.S5G006900"
Ledus.S5	AUGUSTUS	start_codon	791186	791188	.	+	0	transcript_id "Ledus.S5G006900.t1"; gene_id "Ledus.S5G006900"
Ledus.S5	AUGUSTUS	CDS	791186	791424	0.71	+	0	transcript_id "Ledus.S5G006900.t1"; gene_id "Ledus.S5G006900"
Ledus.S5	AUGUSTUS	exon	791186	791424	.	+	.	transcript_id "Ledus.S5G006900.t1"; gene_id "Ledus.S5G006900"
Ledus.S5	AUGUSTUS	intron	791425	791511	.	+	.	transcript_id "Ledus.S5G006900.t1"; gene_id "Ledus.S5G006900"
Ledus.S5	AUGUSTUS	CDS	791512	791815	0.91	+	1	transcript_id "Ledus.S5G006900.t1"; gene_id "Ledus.S5G006900"
Ledus.S5	AUGUSTUS	exon	791512	791815	.	+	.	transcript_id "Ledus.S5G006900.t1"; gene_id "Ledus.S5G006900"
Ledus.S5	AUGUSTUS	stop_codon	791816	791818	.	+	0	transcript_id "Ledus.S5G006900.t1"; gene_id "Ledus.S5G006900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg993.t1 is derived from g7854.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6533685	6534560	.	+	.	Ledus.S2G087500
Ledus.S2	AUGUSTUS	transcript	6533685	6534560	.	+	.	transcript_id "Ledus.S2G087500.t1"; gene_id "Ledus.S2G087500"
Ledus.S2	AUGUSTUS	start_codon	6533685	6533687	.	+	0	transcript_id "Ledus.S2G087500.t1"; gene_id "Ledus.S2G087500"
Ledus.S2	AUGUSTUS	CDS	6533685	6534560	0.66	+	0	transcript_id "Ledus.S2G087500.t1"; gene_id "Ledus.S2G087500"
Ledus.S2	AUGUSTUS	exon	6533685	6534560	.	+	.	transcript_id "Ledus.S2G087500.t1"; gene_id "Ledus.S2G087500"
Ledus.S2	AUGUSTUS	stop_codon	6534561	6534563	.	+	0	transcript_id "Ledus.S2G087500.t1"; gene_id "Ledus.S2G087500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10142.t1 is derived from g11172.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13137698	13138198	.	+	.	Ledus.S3G161900
Ledus.S3	AUGUSTUS	transcript	13137698	13138198	.	+	.	transcript_id "Ledus.S3G161900.t1"; gene_id "Ledus.S3G161900"
Ledus.S3	AUGUSTUS	start_codon	13137698	13137700	.	+	0	transcript_id "Ledus.S3G161900.t1"; gene_id "Ledus.S3G161900"
Ledus.S3	AUGUSTUS	CDS	13137698	13137710	0.48	+	0	transcript_id "Ledus.S3G161900.t1"; gene_id "Ledus.S3G161900"
Ledus.S3	AUGUSTUS	exon	13137698	13137710	.	+	.	transcript_id "Ledus.S3G161900.t1"; gene_id "Ledus.S3G161900"
Ledus.S3	AUGUSTUS	intron	13137711	13137877	.	+	.	transcript_id "Ledus.S3G161900.t1"; gene_id "Ledus.S3G161900"
Ledus.S3	AUGUSTUS	CDS	13137878	13137967	0.51	+	2	transcript_id "Ledus.S3G161900.t1"; gene_id "Ledus.S3G161900"
Ledus.S3	AUGUSTUS	exon	13137878	13137967	.	+	.	transcript_id "Ledus.S3G161900.t1"; gene_id "Ledus.S3G161900"
Ledus.S3	AUGUSTUS	intron	13137968	13138097	.	+	.	transcript_id "Ledus.S3G161900.t1"; gene_id "Ledus.S3G161900"
Ledus.S3	AUGUSTUS	CDS	13138098	13138198	0.42	+	2	transcript_id "Ledus.S3G161900.t1"; gene_id "Ledus.S3G161900"
Ledus.S3	AUGUSTUS	exon	13138098	13138198	.	+	.	transcript_id "Ledus.S3G161900.t1"; gene_id "Ledus.S3G161900"
Ledus.S3	AUGUSTUS	stop_codon	13138199	13138201	.	+	0	transcript_id "Ledus.S3G161900.t1"; gene_id "Ledus.S3G161900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9136.t1 is derived from g10166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	4787981	4789313	.	-	.	Ledus.S3G061300
Ledus.S3	AUGUSTUS	transcript	4787981	4789313	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	stop_codon	4787978	4787980	.	-	0	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	CDS	4787981	4788040	1	-	0	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	exon	4787981	4788040	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	intron	4788041	4788123	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	CDS	4788124	4788299	1	-	2	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	exon	4788124	4788299	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	intron	4788300	4788398	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	CDS	4788399	4788459	1	-	0	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	exon	4788399	4788459	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	intron	4788460	4788544	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	CDS	4788545	4788617	1	-	1	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	exon	4788545	4788617	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	intron	4788618	4788691	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	CDS	4788692	4788789	1	-	0	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	exon	4788692	4788789	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	intron	4788790	4788886	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	CDS	4788887	4789033	1	-	0	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	exon	4788887	4789033	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	intron	4789034	4789118	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	CDS	4789119	4789313	0.8	-	0	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	exon	4789119	4789313	.	-	.	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
Ledus.S3	AUGUSTUS	start_codon	4789311	4789313	.	-	0	transcript_id "Ledus.S3G061300.t1"; gene_id "Ledus.S3G061300"
# This transcript jg13049.t2 is derived from g6859.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13050.t1 is derived from g6860.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	4160141	4161685	.	+	.	Ledus.S6G011200
Ledus.S6	AUGUSTUS	transcript	4160141	4161685	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	start_codon	4160141	4160143	.	+	0	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	CDS	4160141	4160158	0.51	+	0	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	exon	4160141	4160158	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	intron	4160159	4160319	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	CDS	4160320	4160378	0.65	+	0	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	exon	4160320	4160378	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	intron	4160379	4160517	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	CDS	4160518	4160537	0.53	+	1	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	exon	4160518	4160537	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	intron	4160538	4160624	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	CDS	4160625	4160637	0.55	+	2	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	exon	4160625	4160637	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	intron	4160638	4161136	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	CDS	4161137	4161166	0.48	+	1	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	exon	4161137	4161166	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	intron	4161167	4161409	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	CDS	4161410	4161509	0.84	+	1	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	exon	4161410	4161509	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	intron	4161510	4161655	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	CDS	4161656	4161685	0.84	+	0	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	exon	4161656	4161685	.	+	.	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
Ledus.S6	AUGUSTUS	stop_codon	4161686	4161688	.	+	0	transcript_id "Ledus.S6G011200.t1"; gene_id "Ledus.S6G011200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10707.t1 is derived from g11737.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17295564	17299015	.	-	.	Ledus.S3G218400
Ledus.S3	AUGUSTUS	transcript	17295564	17299015	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	stop_codon	17295561	17295563	.	-	0	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	CDS	17295564	17295607	0.99	-	2	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	exon	17295564	17295607	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	intron	17295608	17295671	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	CDS	17295672	17297056	0.99	-	1	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	exon	17295672	17297056	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	intron	17297057	17297128	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	CDS	17297129	17297239	1	-	1	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	exon	17297129	17297239	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	intron	17297240	17297322	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	CDS	17297323	17297436	1	-	1	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	exon	17297323	17297436	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	intron	17297437	17297515	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	CDS	17297516	17297560	1	-	1	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	exon	17297516	17297560	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	intron	17297561	17297752	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	CDS	17297753	17297866	0.85	-	1	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	exon	17297753	17297866	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	intron	17297867	17297933	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	CDS	17297934	17297984	0.85	-	1	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	exon	17297934	17297984	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	intron	17297985	17298070	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	CDS	17298071	17298201	1	-	0	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	exon	17298071	17298201	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	intron	17298202	17298292	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	CDS	17298293	17298417	0.72	-	2	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	exon	17298293	17298417	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	intron	17298418	17298653	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	CDS	17298654	17298706	0.68	-	1	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	exon	17298654	17298706	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	intron	17298707	17298809	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	CDS	17298810	17299015	0.33	-	0	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	exon	17298810	17299015	.	-	.	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
Ledus.S3	AUGUSTUS	start_codon	17299013	17299015	.	-	0	transcript_id "Ledus.S3G218400.t1"; gene_id "Ledus.S3G218400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1171.t1 is derived from g8032.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8138026	8139183	.	+	.	Ledus.S2G105300
Ledus.S2	AUGUSTUS	transcript	8138026	8139183	.	+	.	transcript_id "Ledus.S2G105300.t1"; gene_id "Ledus.S2G105300"
Ledus.S2	AUGUSTUS	start_codon	8138026	8138028	.	+	0	transcript_id "Ledus.S2G105300.t1"; gene_id "Ledus.S2G105300"
Ledus.S2	AUGUSTUS	CDS	8138026	8139183	0.77	+	0	transcript_id "Ledus.S2G105300.t1"; gene_id "Ledus.S2G105300"
Ledus.S2	AUGUSTUS	exon	8138026	8139183	.	+	.	transcript_id "Ledus.S2G105300.t1"; gene_id "Ledus.S2G105300"
Ledus.S2	AUGUSTUS	stop_codon	8139184	8139186	.	+	0	transcript_id "Ledus.S2G105300.t1"; gene_id "Ledus.S2G105300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1165.t1 is derived from g8026.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	8036912	8038757	.	+	.	Ledus.S2G104700
Ledus.S2	AUGUSTUS	transcript	8036912	8038757	.	+	.	transcript_id "Ledus.S2G104700.t1"; gene_id "Ledus.S2G104700"
Ledus.S2	AUGUSTUS	start_codon	8036912	8036914	.	+	0	transcript_id "Ledus.S2G104700.t1"; gene_id "Ledus.S2G104700"
Ledus.S2	AUGUSTUS	CDS	8036912	8037363	0.69	+	0	transcript_id "Ledus.S2G104700.t1"; gene_id "Ledus.S2G104700"
Ledus.S2	AUGUSTUS	exon	8036912	8037363	.	+	.	transcript_id "Ledus.S2G104700.t1"; gene_id "Ledus.S2G104700"
Ledus.S2	AUGUSTUS	intron	8037364	8037446	.	+	.	transcript_id "Ledus.S2G104700.t1"; gene_id "Ledus.S2G104700"
Ledus.S2	AUGUSTUS	CDS	8037447	8037982	1	+	1	transcript_id "Ledus.S2G104700.t1"; gene_id "Ledus.S2G104700"
Ledus.S2	AUGUSTUS	exon	8037447	8037982	.	+	.	transcript_id "Ledus.S2G104700.t1"; gene_id "Ledus.S2G104700"
Ledus.S2	AUGUSTUS	intron	8037983	8038065	.	+	.	transcript_id "Ledus.S2G104700.t1"; gene_id "Ledus.S2G104700"
Ledus.S2	AUGUSTUS	CDS	8038066	8038757	1	+	2	transcript_id "Ledus.S2G104700.t1"; gene_id "Ledus.S2G104700"
Ledus.S2	AUGUSTUS	exon	8038066	8038757	.	+	.	transcript_id "Ledus.S2G104700.t1"; gene_id "Ledus.S2G104700"
Ledus.S2	AUGUSTUS	stop_codon	8038758	8038760	.	+	0	transcript_id "Ledus.S2G104700.t1"; gene_id "Ledus.S2G104700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3708.t1 is derived from g1144.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	11065381	11065620	.	-	.	Ledus.S1G112900
Ledus.S1	AUGUSTUS	transcript	11065381	11065620	.	-	.	transcript_id "Ledus.S1G112900.t1"; gene_id "Ledus.S1G112900"
Ledus.S1	AUGUSTUS	stop_codon	11065378	11065380	.	-	0	transcript_id "Ledus.S1G112900.t1"; gene_id "Ledus.S1G112900"
Ledus.S1	AUGUSTUS	CDS	11065381	11065620	0.75	-	0	transcript_id "Ledus.S1G112900.t1"; gene_id "Ledus.S1G112900"
Ledus.S1	AUGUSTUS	exon	11065381	11065620	.	-	.	transcript_id "Ledus.S1G112900.t1"; gene_id "Ledus.S1G112900"
Ledus.S1	AUGUSTUS	start_codon	11065618	11065620	.	-	0	transcript_id "Ledus.S1G112900.t1"; gene_id "Ledus.S1G112900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12756.t1 is derived from g6378.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14305806	14306084	.	+	.	Ledus.S4G191200
Ledus.S4	AUGUSTUS	transcript	14305806	14306084	.	+	.	transcript_id "Ledus.S4G191200.t1"; gene_id "Ledus.S4G191200"
Ledus.S4	AUGUSTUS	start_codon	14305806	14305808	.	+	0	transcript_id "Ledus.S4G191200.t1"; gene_id "Ledus.S4G191200"
Ledus.S4	AUGUSTUS	CDS	14305806	14306084	1	+	0	transcript_id "Ledus.S4G191200.t1"; gene_id "Ledus.S4G191200"
Ledus.S4	AUGUSTUS	exon	14305806	14306084	.	+	.	transcript_id "Ledus.S4G191200.t1"; gene_id "Ledus.S4G191200"
Ledus.S4	AUGUSTUS	stop_codon	14306085	14306087	.	+	0	transcript_id "Ledus.S4G191200.t1"; gene_id "Ledus.S4G191200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7404.t1 is derived from g12075.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2117095	2117511	.	+	.	Ledus.S5G018200
Ledus.S5	AUGUSTUS	transcript	2117095	2117511	.	+	.	transcript_id "Ledus.S5G018200.t1"; gene_id "Ledus.S5G018200"
Ledus.S5	AUGUSTUS	start_codon	2117095	2117097	.	+	0	transcript_id "Ledus.S5G018200.t1"; gene_id "Ledus.S5G018200"
Ledus.S5	AUGUSTUS	CDS	2117095	2117511	1	+	0	transcript_id "Ledus.S5G018200.t1"; gene_id "Ledus.S5G018200"
Ledus.S5	AUGUSTUS	exon	2117095	2117511	.	+	.	transcript_id "Ledus.S5G018200.t1"; gene_id "Ledus.S5G018200"
Ledus.S5	AUGUSTUS	stop_codon	2117512	2117514	.	+	0	transcript_id "Ledus.S5G018200.t1"; gene_id "Ledus.S5G018200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3163.t1 is derived from g598.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	6460638	6462821	.	-	.	Ledus.S1G058400
Ledus.S1	AUGUSTUS	transcript	6460638	6462821	.	-	.	transcript_id "Ledus.S1G058400.t1"; gene_id "Ledus.S1G058400"
Ledus.S1	AUGUSTUS	stop_codon	6460635	6460637	.	-	0	transcript_id "Ledus.S1G058400.t1"; gene_id "Ledus.S1G058400"
Ledus.S1	AUGUSTUS	CDS	6460638	6462821	0.93	-	0	transcript_id "Ledus.S1G058400.t1"; gene_id "Ledus.S1G058400"
Ledus.S1	AUGUSTUS	exon	6460638	6462821	.	-	.	transcript_id "Ledus.S1G058400.t1"; gene_id "Ledus.S1G058400"
Ledus.S1	AUGUSTUS	start_codon	6462819	6462821	.	-	0	transcript_id "Ledus.S1G058400.t1"; gene_id "Ledus.S1G058400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5422.t1 is derived from g2861.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24068535	24070290	.	-	.	Ledus.S1G284300
Ledus.S1	AUGUSTUS	transcript	24068535	24070290	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	stop_codon	24068532	24068534	.	-	0	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	CDS	24068535	24068687	0.96	-	0	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	exon	24068535	24068687	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	intron	24068688	24068771	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	CDS	24068772	24068865	1	-	1	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	exon	24068772	24068865	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	intron	24068866	24068946	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	CDS	24068947	24069008	1	-	0	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	exon	24068947	24069008	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	intron	24069009	24069106	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	CDS	24069107	24069178	1	-	0	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	exon	24069107	24069178	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	intron	24069179	24069301	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	CDS	24069302	24069349	1	-	0	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	exon	24069302	24069349	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	intron	24069350	24069483	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	CDS	24069484	24069576	1	-	0	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	exon	24069484	24069576	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	intron	24069577	24069703	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	CDS	24069704	24069766	1	-	0	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	exon	24069704	24069766	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	intron	24069767	24069868	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	CDS	24069869	24070126	1	-	0	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	exon	24069869	24070126	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	intron	24070127	24070209	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	CDS	24070210	24070290	1	-	0	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	exon	24070210	24070290	.	-	.	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
Ledus.S1	AUGUSTUS	start_codon	24070288	24070290	.	-	0	transcript_id "Ledus.S1G284300.t1"; gene_id "Ledus.S1G284300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12753.t1 is derived from g6375.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	14220588	14225336	.	-	.	Ledus.S4G190900
Ledus.S4	AUGUSTUS	transcript	14220588	14225336	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	stop_codon	14220585	14220587	.	-	0	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	CDS	14220588	14220818	0.99	-	0	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	exon	14220588	14220818	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	intron	14220819	14220920	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	CDS	14220921	14222450	0.94	-	0	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	exon	14220921	14222450	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	intron	14222451	14222675	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	CDS	14222676	14223268	0.63	-	2	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	exon	14222676	14223268	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	intron	14223269	14223361	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	CDS	14223362	14223737	1	-	0	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	exon	14223362	14223737	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	intron	14223738	14223833	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	CDS	14223834	14224610	0.99	-	0	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	exon	14223834	14224610	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	intron	14224611	14224696	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	CDS	14224697	14224930	1	-	0	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	exon	14224697	14224930	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	intron	14224931	14225012	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	CDS	14225013	14225336	0.68	-	0	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	exon	14225013	14225336	.	-	.	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
Ledus.S4	AUGUSTUS	start_codon	14225334	14225336	.	-	0	transcript_id "Ledus.S4G190900.t1"; gene_id "Ledus.S4G190900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10225.t1 is derived from g11255.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	13657172	13659786	.	+	.	Ledus.S3G170200
Ledus.S3	AUGUSTUS	transcript	13657172	13659786	.	+	.	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	start_codon	13657172	13657174	.	+	0	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	CDS	13657172	13657295	0.56	+	0	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	exon	13657172	13657295	.	+	.	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	intron	13657296	13657385	.	+	.	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	CDS	13657386	13658824	0.79	+	2	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	exon	13657386	13658824	.	+	.	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	intron	13658825	13658921	.	+	.	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	CDS	13658922	13659487	0.9	+	0	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	exon	13658922	13659487	.	+	.	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	intron	13659488	13659581	.	+	.	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	CDS	13659582	13659786	0.9	+	1	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	exon	13659582	13659786	.	+	.	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
Ledus.S3	AUGUSTUS	stop_codon	13659787	13659789	.	+	0	transcript_id "Ledus.S3G170200.t1"; gene_id "Ledus.S3G170200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg138.t1 is derived from g6999.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	249604	250217	.	-	.	Ledus.S2G002000
Ledus.S2	AUGUSTUS	transcript	249604	250217	.	-	.	transcript_id "Ledus.S2G002000.t1"; gene_id "Ledus.S2G002000"
Ledus.S2	AUGUSTUS	stop_codon	249601	249603	.	-	0	transcript_id "Ledus.S2G002000.t1"; gene_id "Ledus.S2G002000"
Ledus.S2	AUGUSTUS	CDS	249604	250053	0.75	-	0	transcript_id "Ledus.S2G002000.t1"; gene_id "Ledus.S2G002000"
Ledus.S2	AUGUSTUS	exon	249604	250053	.	-	.	transcript_id "Ledus.S2G002000.t1"; gene_id "Ledus.S2G002000"
Ledus.S2	AUGUSTUS	intron	250054	250133	.	-	.	transcript_id "Ledus.S2G002000.t1"; gene_id "Ledus.S2G002000"
Ledus.S2	AUGUSTUS	CDS	250134	250217	0.88	-	0	transcript_id "Ledus.S2G002000.t1"; gene_id "Ledus.S2G002000"
Ledus.S2	AUGUSTUS	exon	250134	250217	.	-	.	transcript_id "Ledus.S2G002000.t1"; gene_id "Ledus.S2G002000"
Ledus.S2	AUGUSTUS	start_codon	250215	250217	.	-	0	transcript_id "Ledus.S2G002000.t1"; gene_id "Ledus.S2G002000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11327.t1 is derived from g4945.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3596315	3596602	.	+	.	Ledus.S4G048300
Ledus.S4	AUGUSTUS	transcript	3596315	3596602	.	+	.	transcript_id "Ledus.S4G048300.t1"; gene_id "Ledus.S4G048300"
Ledus.S4	AUGUSTUS	start_codon	3596315	3596317	.	+	0	transcript_id "Ledus.S4G048300.t1"; gene_id "Ledus.S4G048300"
Ledus.S4	AUGUSTUS	CDS	3596315	3596602	0.74	+	0	transcript_id "Ledus.S4G048300.t1"; gene_id "Ledus.S4G048300"
Ledus.S4	AUGUSTUS	exon	3596315	3596602	.	+	.	transcript_id "Ledus.S4G048300.t1"; gene_id "Ledus.S4G048300"
Ledus.S4	AUGUSTUS	stop_codon	3596603	3596605	.	+	0	transcript_id "Ledus.S4G048300.t1"; gene_id "Ledus.S4G048300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6569.t1 is derived from g4012.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32446062	32447148	.	-	.	Ledus.S1G399000
Ledus.S1	AUGUSTUS	transcript	32446062	32447148	.	-	.	transcript_id "Ledus.S1G399000.t1"; gene_id "Ledus.S1G399000"
Ledus.S1	AUGUSTUS	stop_codon	32446059	32446061	.	-	0	transcript_id "Ledus.S1G399000.t1"; gene_id "Ledus.S1G399000"
Ledus.S1	AUGUSTUS	CDS	32446062	32446674	0.93	-	1	transcript_id "Ledus.S1G399000.t1"; gene_id "Ledus.S1G399000"
Ledus.S1	AUGUSTUS	exon	32446062	32446674	.	-	.	transcript_id "Ledus.S1G399000.t1"; gene_id "Ledus.S1G399000"
Ledus.S1	AUGUSTUS	intron	32446675	32446836	.	-	.	transcript_id "Ledus.S1G399000.t1"; gene_id "Ledus.S1G399000"
Ledus.S1	AUGUSTUS	CDS	32446837	32446871	1	-	0	transcript_id "Ledus.S1G399000.t1"; gene_id "Ledus.S1G399000"
Ledus.S1	AUGUSTUS	exon	32446837	32446871	.	-	.	transcript_id "Ledus.S1G399000.t1"; gene_id "Ledus.S1G399000"
Ledus.S1	AUGUSTUS	intron	32446872	32447022	.	-	.	transcript_id "Ledus.S1G399000.t1"; gene_id "Ledus.S1G399000"
Ledus.S1	AUGUSTUS	CDS	32447023	32447148	0.94	-	0	transcript_id "Ledus.S1G399000.t1"; gene_id "Ledus.S1G399000"
Ledus.S1	AUGUSTUS	exon	32447023	32447148	.	-	.	transcript_id "Ledus.S1G399000.t1"; gene_id "Ledus.S1G399000"
Ledus.S1	AUGUSTUS	start_codon	32447146	32447148	.	-	0	transcript_id "Ledus.S1G399000.t1"; gene_id "Ledus.S1G399000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10568.t1 is derived from g11598.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	16197098	16198084	.	-	.	Ledus.S3G204500
Ledus.S3	AUGUSTUS	transcript	16197098	16198084	.	-	.	transcript_id "Ledus.S3G204500.t1"; gene_id "Ledus.S3G204500"
Ledus.S3	AUGUSTUS	stop_codon	16197095	16197097	.	-	0	transcript_id "Ledus.S3G204500.t1"; gene_id "Ledus.S3G204500"
Ledus.S3	AUGUSTUS	CDS	16197098	16198084	1	-	0	transcript_id "Ledus.S3G204500.t1"; gene_id "Ledus.S3G204500"
Ledus.S3	AUGUSTUS	exon	16197098	16198084	.	-	.	transcript_id "Ledus.S3G204500.t1"; gene_id "Ledus.S3G204500"
Ledus.S3	AUGUSTUS	start_codon	16198082	16198084	.	-	0	transcript_id "Ledus.S3G204500.t1"; gene_id "Ledus.S3G204500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6884.t1 is derived from g4328.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	34939054	34941103	.	-	.	Ledus.S1G430500
Ledus.S1	AUGUSTUS	transcript	34939054	34941103	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	stop_codon	34939051	34939053	.	-	0	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	CDS	34939054	34939150	0.99	-	1	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	exon	34939054	34939150	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	intron	34939151	34939252	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	CDS	34939253	34939478	1	-	2	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	exon	34939253	34939478	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	intron	34939479	34939568	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	CDS	34939569	34939647	1	-	0	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	exon	34939569	34939647	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	intron	34939648	34939736	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	CDS	34939737	34939823	1	-	0	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	exon	34939737	34939823	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	intron	34939824	34939904	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	CDS	34939905	34940144	1	-	0	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	exon	34939905	34940144	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	intron	34940145	34940236	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	CDS	34940237	34940392	1	-	0	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	exon	34940237	34940392	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	intron	34940393	34940481	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	CDS	34940482	34940643	1	-	0	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	exon	34940482	34940643	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	intron	34940644	34940719	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	CDS	34940720	34941103	0.99	-	0	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	exon	34940720	34941103	.	-	.	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
Ledus.S1	AUGUSTUS	start_codon	34941101	34941103	.	-	0	transcript_id "Ledus.S1G430500.t1"; gene_id "Ledus.S1G430500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6955.t1 is derived from g6486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	300662	303965	.	-	.	Ledus.C7G001600
Ledus.C7	AUGUSTUS	transcript	300662	303965	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	stop_codon	300659	300661	.	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	300662	300775	1	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	300662	300775	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	300776	300870	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	300871	300999	1	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	300871	300999	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	301000	301091	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	301092	301178	1	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	301092	301178	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	301179	301329	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	301330	301521	1	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	301330	301521	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	301522	301672	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	301673	301849	1	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	301673	301849	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	301850	301960	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	301961	302204	1	-	1	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	301961	302204	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	302205	302320	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	302321	302430	0.96	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	302321	302430	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	302431	302540	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	302541	302641	1	-	2	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	302541	302641	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	302642	302717	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	302718	302781	1	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	302718	302781	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	302782	302890	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	302891	302980	0.96	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	302891	302980	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	302981	303062	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	303063	303161	1	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	303063	303161	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	303162	303342	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	303343	303423	1	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	303343	303423	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	303424	303611	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	303612	303646	0.99	-	2	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	303612	303646	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	intron	303647	303727	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	CDS	303728	303965	0.88	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	exon	303728	303965	.	-	.	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
Ledus.C7	AUGUSTUS	start_codon	303963	303965	.	-	0	transcript_id "Ledus.C7G001600.t1"; gene_id "Ledus.C7G001600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10373.t1 is derived from g11403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	14582430	14584019	.	-	.	Ledus.S3G185000
Ledus.S3	AUGUSTUS	transcript	14582430	14584019	.	-	.	transcript_id "Ledus.S3G185000.t1"; gene_id "Ledus.S3G185000"
Ledus.S3	AUGUSTUS	stop_codon	14582427	14582429	.	-	0	transcript_id "Ledus.S3G185000.t1"; gene_id "Ledus.S3G185000"
Ledus.S3	AUGUSTUS	CDS	14582430	14584019	0.3	-	0	transcript_id "Ledus.S3G185000.t1"; gene_id "Ledus.S3G185000"
Ledus.S3	AUGUSTUS	exon	14582430	14584019	.	-	.	transcript_id "Ledus.S3G185000.t1"; gene_id "Ledus.S3G185000"
Ledus.S3	AUGUSTUS	start_codon	14584017	14584019	.	-	0	transcript_id "Ledus.S3G185000.t1"; gene_id "Ledus.S3G185000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3517.t1 is derived from g952.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	9029066	9029893	.	+	.	Ledus.S1G093800
Ledus.S1	AUGUSTUS	transcript	9029066	9029893	.	+	.	transcript_id "Ledus.S1G093800.t1"; gene_id "Ledus.S1G093800"
Ledus.S1	AUGUSTUS	start_codon	9029066	9029068	.	+	0	transcript_id "Ledus.S1G093800.t1"; gene_id "Ledus.S1G093800"
Ledus.S1	AUGUSTUS	CDS	9029066	9029288	0.36	+	0	transcript_id "Ledus.S1G093800.t1"; gene_id "Ledus.S1G093800"
Ledus.S1	AUGUSTUS	exon	9029066	9029288	.	+	.	transcript_id "Ledus.S1G093800.t1"; gene_id "Ledus.S1G093800"
Ledus.S1	AUGUSTUS	intron	9029289	9029642	.	+	.	transcript_id "Ledus.S1G093800.t1"; gene_id "Ledus.S1G093800"
Ledus.S1	AUGUSTUS	CDS	9029643	9029893	0.43	+	2	transcript_id "Ledus.S1G093800.t1"; gene_id "Ledus.S1G093800"
Ledus.S1	AUGUSTUS	exon	9029643	9029893	.	+	.	transcript_id "Ledus.S1G093800.t1"; gene_id "Ledus.S1G093800"
Ledus.S1	AUGUSTUS	stop_codon	9029894	9029896	.	+	0	transcript_id "Ledus.S1G093800.t1"; gene_id "Ledus.S1G093800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13005.t1 is derived from g6815.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	2569579	2569800	.	+	.	Ledus.S6G006700
Ledus.S6	AUGUSTUS	transcript	2569579	2569800	.	+	.	transcript_id "Ledus.S6G006700.t1"; gene_id "Ledus.S6G006700"
Ledus.S6	AUGUSTUS	start_codon	2569579	2569581	.	+	0	transcript_id "Ledus.S6G006700.t1"; gene_id "Ledus.S6G006700"
Ledus.S6	AUGUSTUS	CDS	2569579	2569800	0.65	+	0	transcript_id "Ledus.S6G006700.t1"; gene_id "Ledus.S6G006700"
Ledus.S6	AUGUSTUS	exon	2569579	2569800	.	+	.	transcript_id "Ledus.S6G006700.t1"; gene_id "Ledus.S6G006700"
Ledus.S6	AUGUSTUS	stop_codon	2569801	2569803	.	+	0	transcript_id "Ledus.S6G006700.t1"; gene_id "Ledus.S6G006700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11564.t1 is derived from g5182.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	5292214	5293692	.	-	.	Ledus.S4G072000
Ledus.S4	AUGUSTUS	transcript	5292214	5293644	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	stop_codon	5292211	5292213	.	-	0	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5292214	5292255	0.99	-	0	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5292214	5292255	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5292256	5292336	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5292337	5292436	0.99	-	1	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5292337	5292436	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5292437	5292521	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5292522	5292688	0.99	-	0	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5292522	5292688	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5292689	5292795	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5292796	5292952	0.97	-	1	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5292796	5292952	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5292953	5293043	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5293044	5293144	1	-	0	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5293044	5293144	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5293145	5293289	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5293290	5293442	0.99	-	0	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5293290	5293442	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5293443	5293536	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5293537	5293644	0.58	-	0	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5293537	5293644	.	-	.	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	start_codon	5293642	5293644	.	-	0	transcript_id "Ledus.S4G072000.t1"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	transcript	5292214	5293692	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	stop_codon	5292211	5292213	.	-	0	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5292214	5292255	1	-	0	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5292214	5292255	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5292256	5292336	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5292337	5292436	1	-	1	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5292337	5292436	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5292437	5292521	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5292522	5292688	1	-	0	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5292522	5292688	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5292689	5292795	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5292796	5292952	0.99	-	1	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5292796	5292952	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5292953	5293043	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5293044	5293144	1	-	0	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5293044	5293144	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5293145	5293289	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5293290	5293364	0.52	-	0	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5293290	5293364	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5293365	5293432	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5293433	5293442	0.64	-	1	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5293433	5293442	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	intron	5293443	5293660	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	CDS	5293661	5293692	0.53	-	0	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	exon	5293661	5293692	.	-	.	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
Ledus.S4	AUGUSTUS	start_codon	5293690	5293692	.	-	0	transcript_id "Ledus.S4G072000.t2"; gene_id "Ledus.S4G072000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11438.t1 is derived from g5056.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4293655	4296288	.	-	.	Ledus.S4G059400
Ledus.S4	AUGUSTUS	transcript	4293655	4296288	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	stop_codon	4293652	4293654	.	-	0	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	CDS	4293655	4293834	1	-	0	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	exon	4293655	4293834	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	intron	4293835	4293927	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	CDS	4293928	4294128	1	-	0	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	exon	4293928	4294128	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	intron	4294129	4294203	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	CDS	4294204	4294605	1	-	0	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	exon	4294204	4294605	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	intron	4294606	4294692	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	CDS	4294693	4294887	0.96	-	0	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	exon	4294693	4294887	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	intron	4294888	4294967	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	CDS	4294968	4294980	0.96	-	1	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	exon	4294968	4294980	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	intron	4294981	4295051	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	CDS	4295052	4295121	0.96	-	2	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	exon	4295052	4295121	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	intron	4295122	4295185	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	CDS	4295186	4295267	0.96	-	0	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	exon	4295186	4295267	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	intron	4295268	4295363	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	CDS	4295364	4295452	0.84	-	2	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	exon	4295364	4295452	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	intron	4295453	4295709	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	CDS	4295710	4295756	0.73	-	1	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	exon	4295710	4295756	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	intron	4295757	4296232	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	CDS	4296233	4296288	0.74	-	0	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	exon	4296233	4296288	.	-	.	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
Ledus.S4	AUGUSTUS	start_codon	4296286	4296288	.	-	0	transcript_id "Ledus.S4G059400.t1"; gene_id "Ledus.S4G059400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12528.t1 is derived from g6149.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12740702	12743381	.	-	.	Ledus.S4G168400
Ledus.S4	AUGUSTUS	transcript	12740702	12743381	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	stop_codon	12740699	12740701	.	-	0	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	CDS	12740702	12740857	1	-	0	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	exon	12740702	12740857	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	intron	12740858	12741002	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	CDS	12741003	12741155	0.98	-	0	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	exon	12741003	12741155	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	intron	12741156	12741250	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	CDS	12741251	12741355	1	-	0	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	exon	12741251	12741355	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	intron	12741356	12741434	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	CDS	12741435	12741654	1	-	1	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	exon	12741435	12741654	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	intron	12741655	12741737	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	CDS	12741738	12741904	1	-	0	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	exon	12741738	12741904	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	intron	12741905	12742041	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	CDS	12742042	12742216	0.97	-	1	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	exon	12742042	12742216	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	intron	12742217	12742334	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	CDS	12742335	12742507	0.35	-	0	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	exon	12742335	12742507	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	intron	12742508	12742632	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	CDS	12742633	12742702	1	-	1	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	exon	12742633	12742702	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	intron	12742703	12742938	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	CDS	12742939	12743381	0.8	-	0	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	exon	12742939	12743381	.	-	.	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
Ledus.S4	AUGUSTUS	start_codon	12743379	12743381	.	-	0	transcript_id "Ledus.S4G168400.t1"; gene_id "Ledus.S4G168400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11412.t1 is derived from g5030.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4114824	4120924	.	+	.	Ledus.S4G056800
Ledus.S4	AUGUSTUS	transcript	4114824	4120924	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	start_codon	4114824	4114826	.	+	0	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4114824	4114855	0.96	+	0	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4114824	4114855	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4114856	4115084	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4115085	4115457	1	+	1	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4115085	4115457	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4115458	4115654	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4115655	4115895	0.63	+	0	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4115655	4115895	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4115896	4116030	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4116031	4116080	0.63	+	2	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4116031	4116080	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4116081	4116189	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4116190	4116282	0.72	+	0	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4116190	4116282	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4116283	4117484	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4117485	4117573	1	+	0	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4117485	4117573	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4117574	4117801	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4117802	4117880	1	+	1	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4117802	4117880	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4117881	4117972	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4117973	4118055	1	+	0	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4117973	4118055	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4118056	4118152	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4118153	4118231	1	+	1	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4118153	4118231	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4118232	4118395	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4118396	4119182	1	+	0	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4118396	4119182	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4119183	4119322	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4119323	4120049	0.98	+	2	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4119323	4120049	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4120050	4120134	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4120135	4120265	0.61	+	1	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4120135	4120265	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4120266	4120485	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4120486	4120517	0.52	+	2	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4120486	4120517	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4120518	4120739	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4120740	4120753	0.62	+	0	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4120740	4120753	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	intron	4120754	4120845	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	CDS	4120846	4120924	0.83	+	1	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	exon	4120846	4120924	.	+	.	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
Ledus.S4	AUGUSTUS	stop_codon	4120925	4120927	.	+	0	transcript_id "Ledus.S4G056800.t1"; gene_id "Ledus.S4G056800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1504.t1 is derived from g8365.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10613236	10614072	.	+	.	Ledus.S2G138600
Ledus.S2	AUGUSTUS	transcript	10613236	10614072	.	+	.	transcript_id "Ledus.S2G138600.t1"; gene_id "Ledus.S2G138600"
Ledus.S2	AUGUSTUS	start_codon	10613236	10613238	.	+	0	transcript_id "Ledus.S2G138600.t1"; gene_id "Ledus.S2G138600"
Ledus.S2	AUGUSTUS	CDS	10613236	10614072	1	+	0	transcript_id "Ledus.S2G138600.t1"; gene_id "Ledus.S2G138600"
Ledus.S2	AUGUSTUS	exon	10613236	10614072	.	+	.	transcript_id "Ledus.S2G138600.t1"; gene_id "Ledus.S2G138600"
Ledus.S2	AUGUSTUS	stop_codon	10614073	10614075	.	+	0	transcript_id "Ledus.S2G138600.t1"; gene_id "Ledus.S2G138600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8494.t1 is derived from g13166.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12198278	12200327	.	-	.	Ledus.S5G127200
Ledus.S5	AUGUSTUS	transcript	12198278	12200327	.	-	.	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	stop_codon	12198275	12198277	.	-	0	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	CDS	12198278	12198825	1	-	2	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	exon	12198278	12198825	.	-	.	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	intron	12198826	12198917	.	-	.	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	CDS	12198918	12199203	1	-	0	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	exon	12198918	12199203	.	-	.	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	intron	12199204	12199298	.	-	.	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	CDS	12199299	12200058	1	-	1	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	exon	12199299	12200058	.	-	.	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	intron	12200059	12200238	.	-	.	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	CDS	12200239	12200327	0.85	-	0	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	exon	12200239	12200327	.	-	.	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
Ledus.S5	AUGUSTUS	start_codon	12200325	12200327	.	-	0	transcript_id "Ledus.S5G127200.t1"; gene_id "Ledus.S5G127200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg960.t1 is derived from g7821.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	6347787	6348722	.	-	.	Ledus.S2G084200
Ledus.S2	AUGUSTUS	transcript	6347787	6348722	.	-	.	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	stop_codon	6347784	6347786	.	-	0	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	CDS	6347787	6347960	1	-	0	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	exon	6347787	6347960	.	-	.	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	intron	6347961	6348056	.	-	.	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	CDS	6348057	6348193	0.83	-	2	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	exon	6348057	6348193	.	-	.	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	intron	6348194	6348271	.	-	.	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	CDS	6348272	6348408	0.83	-	1	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	exon	6348272	6348408	.	-	.	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	intron	6348409	6348495	.	-	.	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	CDS	6348496	6348722	0.91	-	0	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	exon	6348496	6348722	.	-	.	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
Ledus.S2	AUGUSTUS	start_codon	6348720	6348722	.	-	0	transcript_id "Ledus.S2G084200.t1"; gene_id "Ledus.S2G084200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5137.t1 is derived from g2576.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	21901249	21906770	.	-	.	Ledus.S1G255800
Ledus.S1	AUGUSTUS	transcript	21901249	21906770	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	stop_codon	21901246	21901248	.	-	0	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	CDS	21901249	21901792	0.99	-	1	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	exon	21901249	21901792	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	intron	21901793	21901953	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	CDS	21901954	21902102	1	-	0	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	exon	21901954	21902102	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	intron	21902103	21902254	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	CDS	21902255	21902585	1	-	1	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	exon	21902255	21902585	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	intron	21902586	21902709	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	CDS	21902710	21902800	1	-	2	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	exon	21902710	21902800	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	intron	21902801	21902966	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	CDS	21902967	21903276	0.99	-	0	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	exon	21902967	21903276	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	intron	21903277	21903365	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	CDS	21903366	21903476	1	-	0	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	exon	21903366	21903476	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	intron	21903477	21903602	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	CDS	21903603	21903698	1	-	0	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	exon	21903603	21903698	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	intron	21903699	21903941	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	CDS	21903942	21904167	0.55	-	1	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	exon	21903942	21904167	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	intron	21904168	21904295	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	CDS	21904296	21904344	0.56	-	2	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	exon	21904296	21904344	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	intron	21904345	21904900	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	CDS	21904901	21906347	0.84	-	0	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	exon	21904901	21906347	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	intron	21906348	21906435	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	CDS	21906436	21906442	0.99	-	1	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	exon	21906436	21906442	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	intron	21906443	21906747	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	CDS	21906748	21906770	1	-	0	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	exon	21906748	21906770	.	-	.	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
Ledus.S1	AUGUSTUS	start_codon	21906768	21906770	.	-	0	transcript_id "Ledus.S1G255800.t1"; gene_id "Ledus.S1G255800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4074.t1 is derived from g1510.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14480769	14483923	.	+	.	Ledus.S1G149500
Ledus.S1	AUGUSTUS	transcript	14480769	14483923	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	start_codon	14480769	14480771	.	+	0	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14480769	14480864	1	+	0	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14480769	14480864	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14480865	14480954	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14480955	14481036	0.88	+	0	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14480955	14481036	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14481037	14481149	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14481150	14481208	0.86	+	2	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14481150	14481208	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14481209	14481280	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14481281	14481410	1	+	0	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14481281	14481410	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14481411	14481501	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14481502	14481608	0.77	+	2	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14481502	14481608	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14481609	14481722	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14481723	14481849	0.77	+	0	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14481723	14481849	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14481850	14482028	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14482029	14482139	1	+	2	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14482029	14482139	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14482140	14482316	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14482317	14482429	1	+	2	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14482317	14482429	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14482430	14482533	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14482534	14482617	1	+	0	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14482534	14482617	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14482618	14482722	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14482723	14482791	1	+	0	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14482723	14482791	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14482792	14482936	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14482937	14483008	0.99	+	0	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14482937	14483008	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14483009	14483137	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14483138	14483229	0.99	+	0	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14483138	14483229	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14483230	14483313	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14483314	14483441	1	+	1	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14483314	14483441	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14483442	14483527	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14483528	14483629	1	+	2	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14483528	14483629	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14483630	14483707	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14483708	14483775	1	+	2	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14483708	14483775	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14483776	14483866	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14483867	14483923	1	+	0	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14483867	14483923	.	+	.	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	stop_codon	14483924	14483926	.	+	0	transcript_id "Ledus.S1G149500.t1"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	transcript	14480769	14483923	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	start_codon	14480769	14480771	.	+	0	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14480769	14480864	0.99	+	0	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14480769	14480864	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14480865	14480954	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14480955	14481036	0.79	+	0	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14480955	14481036	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14481037	14481149	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14481150	14481208	0.76	+	2	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14481150	14481208	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14481209	14481280	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14481281	14481410	1	+	0	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14481281	14481410	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14481411	14481501	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14481502	14481595	0.51	+	2	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14481502	14481595	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14481596	14481849	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14481850	14481935	0.64	+	1	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14481850	14481935	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14481936	14482028	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14482029	14482139	0.98	+	2	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14482029	14482139	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14482140	14482316	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14482317	14482429	1	+	2	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14482317	14482429	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14482430	14482533	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14482534	14482617	1	+	0	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14482534	14482617	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14482618	14482722	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14482723	14482791	0.99	+	0	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14482723	14482791	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14482792	14482936	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14482937	14483008	0.98	+	0	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14482937	14483008	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14483009	14483137	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14483138	14483229	0.98	+	0	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14483138	14483229	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14483230	14483313	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14483314	14483441	1	+	1	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14483314	14483441	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14483442	14483527	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14483528	14483629	1	+	2	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14483528	14483629	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14483630	14483707	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14483708	14483775	1	+	2	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14483708	14483775	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	intron	14483776	14483866	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	CDS	14483867	14483923	1	+	0	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	exon	14483867	14483923	.	+	.	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
Ledus.S1	AUGUSTUS	stop_codon	14483924	14483926	.	+	0	transcript_id "Ledus.S1G149500.t2"; gene_id "Ledus.S1G149500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8114.t1 is derived from g12785.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9187516	9187869	.	+	.	Ledus.S5G089200
Ledus.S5	AUGUSTUS	transcript	9187516	9187869	.	+	.	transcript_id "Ledus.S5G089200.t1"; gene_id "Ledus.S5G089200"
Ledus.S5	AUGUSTUS	start_codon	9187516	9187518	.	+	0	transcript_id "Ledus.S5G089200.t1"; gene_id "Ledus.S5G089200"
Ledus.S5	AUGUSTUS	CDS	9187516	9187869	1	+	0	transcript_id "Ledus.S5G089200.t1"; gene_id "Ledus.S5G089200"
Ledus.S5	AUGUSTUS	exon	9187516	9187869	.	+	.	transcript_id "Ledus.S5G089200.t1"; gene_id "Ledus.S5G089200"
Ledus.S5	AUGUSTUS	stop_codon	9187870	9187872	.	+	0	transcript_id "Ledus.S5G089200.t1"; gene_id "Ledus.S5G089200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7815.t1 is derived from g12486.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7019336	7020139	.	-	.	Ledus.S5G059300
Ledus.S5	AUGUSTUS	transcript	7019336	7020139	.	-	.	transcript_id "Ledus.S5G059300.t1"; gene_id "Ledus.S5G059300"
Ledus.S5	AUGUSTUS	stop_codon	7019333	7019335	.	-	0	transcript_id "Ledus.S5G059300.t1"; gene_id "Ledus.S5G059300"
Ledus.S5	AUGUSTUS	CDS	7019336	7020139	0.73	-	0	transcript_id "Ledus.S5G059300.t1"; gene_id "Ledus.S5G059300"
Ledus.S5	AUGUSTUS	exon	7019336	7020139	.	-	.	transcript_id "Ledus.S5G059300.t1"; gene_id "Ledus.S5G059300"
Ledus.S5	AUGUSTUS	start_codon	7020137	7020139	.	-	0	transcript_id "Ledus.S5G059300.t1"; gene_id "Ledus.S5G059300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg7777.t1 is derived from g12448.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	6485813	6489114	.	+	.	Ledus.S5G055500
Ledus.S5	AUGUSTUS	transcript	6485813	6489114	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	start_codon	6485813	6485815	.	+	0	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6485813	6485993	0.53	+	0	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6485813	6485993	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6485994	6486085	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6486086	6486168	1	+	2	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6486086	6486168	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6486169	6486251	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6486252	6486387	1	+	0	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6486252	6486387	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6486388	6486539	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6486540	6486997	0.99	+	2	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6486540	6486997	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6486998	6487087	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6487088	6487135	1	+	0	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6487088	6487135	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6487136	6487216	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6487217	6487391	1	+	0	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6487217	6487391	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6487392	6487481	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6487482	6487594	1	+	2	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6487482	6487594	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6487595	6487682	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6487683	6487774	1	+	0	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6487683	6487774	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6487775	6487900	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6487901	6488113	0.99	+	1	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6487901	6488113	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6488114	6488287	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6488288	6488453	1	+	1	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6488288	6488453	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6488454	6488544	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6488545	6488749	1	+	0	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6488545	6488749	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6488750	6488848	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6488849	6489114	0.87	+	2	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6488849	6489114	.	+	.	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	stop_codon	6489115	6489117	.	+	0	transcript_id "Ledus.S5G055500.t1"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	transcript	6485813	6489114	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	start_codon	6485813	6485815	.	+	0	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6485813	6485993	0.57	+	0	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6485813	6485993	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6485994	6486085	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6486086	6486168	1	+	2	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6486086	6486168	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6486169	6486251	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6486252	6486322	0.5	+	0	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6486252	6486322	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6486323	6486380	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6486381	6486391	0.5	+	1	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6486381	6486391	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6486392	6486539	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6486540	6486997	0.93	+	2	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6486540	6486997	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6486998	6487087	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6487088	6487135	1	+	0	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6487088	6487135	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6487136	6487216	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6487217	6487391	1	+	0	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6487217	6487391	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6487392	6487481	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6487482	6487594	1	+	2	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6487482	6487594	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6487595	6487682	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6487683	6487774	1	+	0	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6487683	6487774	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6487775	6487900	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6487901	6488113	1	+	1	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6487901	6488113	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6488114	6488287	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6488288	6488453	1	+	1	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6488288	6488453	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6488454	6488544	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6488545	6488749	1	+	0	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6488545	6488749	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	intron	6488750	6488848	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	CDS	6488849	6489114	0.84	+	2	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	exon	6488849	6489114	.	+	.	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
Ledus.S5	AUGUSTUS	stop_codon	6489115	6489117	.	+	0	transcript_id "Ledus.S5G055500.t2"; gene_id "Ledus.S5G055500"
# This transcript jg8595.t2 is derived from g9625.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8596.t1 is derived from g9626.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	497069	497829	.	-	.	Ledus.S3G007300
Ledus.S3	AUGUSTUS	transcript	497069	497829	.	-	.	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	stop_codon	497066	497068	.	-	0	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	CDS	497069	497200	0.91	-	0	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	exon	497069	497200	.	-	.	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	intron	497201	497335	.	-	.	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	CDS	497336	497404	1	-	0	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	exon	497336	497404	.	-	.	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	intron	497405	497483	.	-	.	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	CDS	497484	497570	1	-	0	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	exon	497484	497570	.	-	.	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	intron	497571	497688	.	-	.	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	CDS	497689	497829	0.96	-	0	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	exon	497689	497829	.	-	.	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
Ledus.S3	AUGUSTUS	start_codon	497827	497829	.	-	0	transcript_id "Ledus.S3G007300.t1"; gene_id "Ledus.S3G007300"
# This transcript jg1983.t2 is derived from g8846.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg1984.t1 is derived from g8847.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14054297	14059251	.	+	.	Ledus.S2G186600
Ledus.S2	AUGUSTUS	transcript	14054297	14059251	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	start_codon	14054297	14054299	.	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14054297	14054401	0.53	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14054297	14054401	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14054402	14054555	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14054556	14054668	0.89	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14054556	14054668	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14054669	14054792	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14054793	14054868	1	+	1	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14054793	14054868	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14054869	14054948	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14054949	14055091	0.99	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14054949	14055091	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14055092	14055189	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14055190	14055276	0.97	+	1	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14055190	14055276	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14055277	14055397	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14055398	14055481	1	+	1	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14055398	14055481	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14055482	14055560	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14055561	14055768	0.97	+	1	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14055561	14055768	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14055769	14055939	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14055940	14056055	0.64	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14055940	14056055	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14056056	14056210	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14056211	14056442	1	+	1	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14056211	14056442	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14056443	14056600	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14056601	14056724	1	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14056601	14056724	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14056725	14056807	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14056808	14056950	1	+	2	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14056808	14056950	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14056951	14057081	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14057082	14057181	0.67	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14057082	14057181	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14057182	14057276	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14057277	14057319	1	+	2	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14057277	14057319	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14057320	14057538	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14057539	14057722	1	+	1	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14057539	14057722	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14057723	14057818	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14057819	14057889	1	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14057819	14057889	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14057890	14057978	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14057979	14058072	1	+	1	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14057979	14058072	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14058073	14058176	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14058177	14058410	1	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14058177	14058410	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14058411	14058492	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14058493	14058702	1	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14058493	14058702	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14058703	14058792	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14058793	14059053	1	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14058793	14059053	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14059054	14059128	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14059129	14059251	1	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14059129	14059251	.	+	.	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	stop_codon	14059252	14059254	.	+	0	transcript_id "Ledus.S2G186600.t1"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	transcript	14054297	14059251	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	start_codon	14054297	14054299	.	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14054297	14054401	0.36	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14054297	14054401	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14054402	14054555	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14054556	14054668	0.88	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14054556	14054668	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14054669	14054792	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14054793	14054868	1	+	1	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14054793	14054868	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14054869	14054948	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14054949	14055091	0.99	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14054949	14055091	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14055092	14055189	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14055190	14055276	0.99	+	1	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14055190	14055276	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14055277	14055397	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14055398	14055481	0.99	+	1	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14055398	14055481	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14055482	14055560	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14055561	14055768	0.99	+	1	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14055561	14055768	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14055769	14055939	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14055940	14056055	0.6	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14055940	14056055	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14056056	14056210	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14056211	14056442	1	+	1	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14056211	14056442	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14056443	14056600	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14056601	14056724	1	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14056601	14056724	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14056725	14056807	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14056808	14056950	0.99	+	2	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14056808	14056950	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14056951	14057081	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14057082	14057181	0.57	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14057082	14057181	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14057182	14057273	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14057274	14057319	1	+	2	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14057274	14057319	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14057320	14057538	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14057539	14057722	1	+	1	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14057539	14057722	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14057723	14057818	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14057819	14057889	1	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14057819	14057889	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14057890	14057978	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14057979	14058072	1	+	1	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14057979	14058072	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14058073	14058176	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14058177	14058410	1	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14058177	14058410	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14058411	14058492	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14058493	14058702	1	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14058493	14058702	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14058703	14058792	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14058793	14059053	1	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14058793	14059053	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	intron	14059054	14059128	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	CDS	14059129	14059251	1	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	exon	14059129	14059251	.	+	.	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
Ledus.S2	AUGUSTUS	stop_codon	14059252	14059254	.	+	0	transcript_id "Ledus.S2G186600.t2"; gene_id "Ledus.S2G186600"
# This transcript jg3858.t2 is derived from g1294.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3859.t1 is derived from g1295.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13206205	13208109	.	-	.	Ledus.S1G128000
Ledus.S1	AUGUSTUS	transcript	13206205	13208109	.	-	.	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	stop_codon	13206202	13206204	.	-	0	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	CDS	13206205	13206361	0.97	-	1	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	exon	13206205	13206361	.	-	.	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	intron	13206362	13206485	.	-	.	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	CDS	13206486	13206673	0.99	-	0	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	exon	13206486	13206673	.	-	.	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	intron	13206674	13206765	.	-	.	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	CDS	13206766	13207010	1	-	2	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	exon	13206766	13207010	.	-	.	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	intron	13207011	13207114	.	-	.	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	CDS	13207115	13207283	1	-	0	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	exon	13207115	13207283	.	-	.	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	intron	13207284	13207381	.	-	.	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	CDS	13207382	13207809	1	-	2	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	exon	13207382	13207809	.	-	.	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	intron	13207810	13207913	.	-	.	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	CDS	13207914	13208109	0.94	-	0	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	exon	13207914	13208109	.	-	.	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
Ledus.S1	AUGUSTUS	start_codon	13208107	13208109	.	-	0	transcript_id "Ledus.S1G128000.t1"; gene_id "Ledus.S1G128000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1571.t1 is derived from g8432.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10989085	10995919	.	+	.	Ledus.S2G145300
Ledus.S2	AUGUSTUS	transcript	10989085	10995919	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	start_codon	10989085	10989087	.	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10989085	10989226	0.91	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10989085	10989226	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10989227	10989487	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10989488	10989661	1	+	2	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10989488	10989661	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10989662	10989755	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10989756	10989865	1	+	2	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10989756	10989865	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10989866	10989958	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10989959	10990077	1	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10989959	10990077	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10990078	10990180	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10990181	10990238	0.54	+	1	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10990181	10990238	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10990239	10990629	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10990630	10991107	0.55	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10990630	10991107	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10991108	10991302	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10991303	10991547	1	+	2	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10991303	10991547	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10991548	10991679	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10991680	10991878	1	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10991680	10991878	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10991879	10992019	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10992020	10992198	1	+	2	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10992020	10992198	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10992199	10992397	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10992398	10992449	1	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10992398	10992449	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10992450	10992681	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10992682	10992809	1	+	2	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10992682	10992809	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10992810	10992993	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10992994	10993173	1	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10992994	10993173	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10993174	10993268	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10993269	10993336	1	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10993269	10993336	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10993337	10993436	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10993437	10993579	1	+	1	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10993437	10993579	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10993580	10993773	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10993774	10993835	1	+	2	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10993774	10993835	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10993836	10994018	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10994019	10994132	1	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10994019	10994132	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10994133	10994269	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10994270	10994410	1	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10994270	10994410	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10994411	10994565	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10994566	10994718	1	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10994566	10994718	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10994719	10994802	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10994803	10994856	1	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10994803	10994856	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10994857	10994979	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10994980	10995090	1	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10994980	10995090	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10995091	10995229	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10995230	10995403	0.98	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10995230	10995403	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10995404	10995508	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10995509	10995589	0.94	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10995509	10995589	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10995590	10995667	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10995668	10995766	0.97	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10995668	10995766	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	intron	10995767	10995853	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	CDS	10995854	10995919	0.97	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	exon	10995854	10995919	.	+	.	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
Ledus.S2	AUGUSTUS	stop_codon	10995920	10995922	.	+	0	transcript_id "Ledus.S2G145300.t1"; gene_id "Ledus.S2G145300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1832.t1 is derived from g8695.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	12856057	12858452	.	+	.	Ledus.S2G171400
Ledus.S2	AUGUSTUS	transcript	12856057	12858452	.	+	.	transcript_id "Ledus.S2G171400.t1"; gene_id "Ledus.S2G171400"
Ledus.S2	AUGUSTUS	start_codon	12856057	12856059	.	+	0	transcript_id "Ledus.S2G171400.t1"; gene_id "Ledus.S2G171400"
Ledus.S2	AUGUSTUS	CDS	12856057	12856677	0.91	+	0	transcript_id "Ledus.S2G171400.t1"; gene_id "Ledus.S2G171400"
Ledus.S2	AUGUSTUS	exon	12856057	12856677	.	+	.	transcript_id "Ledus.S2G171400.t1"; gene_id "Ledus.S2G171400"
Ledus.S2	AUGUSTUS	intron	12856678	12856769	.	+	.	transcript_id "Ledus.S2G171400.t1"; gene_id "Ledus.S2G171400"
Ledus.S2	AUGUSTUS	CDS	12856770	12858452	1	+	0	transcript_id "Ledus.S2G171400.t1"; gene_id "Ledus.S2G171400"
Ledus.S2	AUGUSTUS	exon	12856770	12858452	.	+	.	transcript_id "Ledus.S2G171400.t1"; gene_id "Ledus.S2G171400"
Ledus.S2	AUGUSTUS	stop_codon	12858453	12858455	.	+	0	transcript_id "Ledus.S2G171400.t1"; gene_id "Ledus.S2G171400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7661.t1 is derived from g12332.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	4891870	4892238	.	-	.	Ledus.S5G043900
Ledus.S5	AUGUSTUS	transcript	4891870	4892238	.	-	.	transcript_id "Ledus.S5G043900.t1"; gene_id "Ledus.S5G043900"
Ledus.S5	AUGUSTUS	stop_codon	4891867	4891869	.	-	0	transcript_id "Ledus.S5G043900.t1"; gene_id "Ledus.S5G043900"
Ledus.S5	AUGUSTUS	CDS	4891870	4892238	0.54	-	0	transcript_id "Ledus.S5G043900.t1"; gene_id "Ledus.S5G043900"
Ledus.S5	AUGUSTUS	exon	4891870	4892238	.	-	.	transcript_id "Ledus.S5G043900.t1"; gene_id "Ledus.S5G043900"
Ledus.S5	AUGUSTUS	start_codon	4892236	4892238	.	-	0	transcript_id "Ledus.S5G043900.t1"; gene_id "Ledus.S5G043900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11046.t1 is derived from g4664.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	1395027	1399252	.	+	.	Ledus.S4G020200
Ledus.S4	AUGUSTUS	transcript	1395027	1399252	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	start_codon	1395027	1395029	.	+	0	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1395027	1395066	0.32	+	0	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1395027	1395066	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1395067	1395168	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1395169	1395228	0.33	+	2	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1395169	1395228	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1395229	1395399	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1395400	1395562	0.74	+	2	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1395400	1395562	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1395563	1396002	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1396003	1396123	1	+	1	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1396003	1396123	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1396124	1396304	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1396305	1396750	1	+	0	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1396305	1396750	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1396751	1396856	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1396857	1397013	1	+	1	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1396857	1397013	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1397014	1397241	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1397242	1397330	1	+	0	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1397242	1397330	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1397331	1397495	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1397496	1397592	1	+	1	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1397496	1397592	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1397593	1397678	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1397679	1397751	1	+	0	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1397679	1397751	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1397752	1397971	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1397972	1398199	0.99	+	2	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1397972	1398199	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1398200	1398342	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1398343	1398506	0.92	+	2	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1398343	1398506	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1398507	1398625	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1398626	1398727	0.99	+	0	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1398626	1398727	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1398728	1398882	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1398883	1398980	1	+	0	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1398883	1398980	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	intron	1398981	1399077	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	CDS	1399078	1399252	1	+	1	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	exon	1399078	1399252	.	+	.	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
Ledus.S4	AUGUSTUS	stop_codon	1399253	1399255	.	+	0	transcript_id "Ledus.S4G020200.t1"; gene_id "Ledus.S4G020200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6712.t1 is derived from g4155.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	33482764	33483417	.	-	.	Ledus.S1G413300
Ledus.S1	AUGUSTUS	transcript	33482764	33483417	.	-	.	transcript_id "Ledus.S1G413300.t1"; gene_id "Ledus.S1G413300"
Ledus.S1	AUGUSTUS	stop_codon	33482761	33482763	.	-	0	transcript_id "Ledus.S1G413300.t1"; gene_id "Ledus.S1G413300"
Ledus.S1	AUGUSTUS	CDS	33482764	33482843	0.62	-	2	transcript_id "Ledus.S1G413300.t1"; gene_id "Ledus.S1G413300"
Ledus.S1	AUGUSTUS	exon	33482764	33482843	.	-	.	transcript_id "Ledus.S1G413300.t1"; gene_id "Ledus.S1G413300"
Ledus.S1	AUGUSTUS	intron	33482844	33482956	.	-	.	transcript_id "Ledus.S1G413300.t1"; gene_id "Ledus.S1G413300"
Ledus.S1	AUGUSTUS	CDS	33482957	33483074	0.62	-	0	transcript_id "Ledus.S1G413300.t1"; gene_id "Ledus.S1G413300"
Ledus.S1	AUGUSTUS	exon	33482957	33483074	.	-	.	transcript_id "Ledus.S1G413300.t1"; gene_id "Ledus.S1G413300"
Ledus.S1	AUGUSTUS	intron	33483075	33483270	.	-	.	transcript_id "Ledus.S1G413300.t1"; gene_id "Ledus.S1G413300"
Ledus.S1	AUGUSTUS	CDS	33483271	33483417	0.42	-	0	transcript_id "Ledus.S1G413300.t1"; gene_id "Ledus.S1G413300"
Ledus.S1	AUGUSTUS	exon	33483271	33483417	.	-	.	transcript_id "Ledus.S1G413300.t1"; gene_id "Ledus.S1G413300"
Ledus.S1	AUGUSTUS	start_codon	33483415	33483417	.	-	0	transcript_id "Ledus.S1G413300.t1"; gene_id "Ledus.S1G413300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11281.t1 is derived from g4899.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3308289	3308612	.	+	.	Ledus.S4G043700
Ledus.S4	AUGUSTUS	transcript	3308289	3308612	.	+	.	transcript_id "Ledus.S4G043700.t1"; gene_id "Ledus.S4G043700"
Ledus.S4	AUGUSTUS	start_codon	3308289	3308291	.	+	0	transcript_id "Ledus.S4G043700.t1"; gene_id "Ledus.S4G043700"
Ledus.S4	AUGUSTUS	CDS	3308289	3308612	0.51	+	0	transcript_id "Ledus.S4G043700.t1"; gene_id "Ledus.S4G043700"
Ledus.S4	AUGUSTUS	exon	3308289	3308612	.	+	.	transcript_id "Ledus.S4G043700.t1"; gene_id "Ledus.S4G043700"
Ledus.S4	AUGUSTUS	stop_codon	3308613	3308615	.	+	0	transcript_id "Ledus.S4G043700.t1"; gene_id "Ledus.S4G043700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13073.t1 is derived from g6883.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	5023044	5023601	.	-	.	Ledus.S6G013500
Ledus.S6	AUGUSTUS	transcript	5023044	5023601	.	-	.	transcript_id "Ledus.S6G013500.t1"; gene_id "Ledus.S6G013500"
Ledus.S6	AUGUSTUS	stop_codon	5023041	5023043	.	-	0	transcript_id "Ledus.S6G013500.t1"; gene_id "Ledus.S6G013500"
Ledus.S6	AUGUSTUS	CDS	5023044	5023601	0.9	-	0	transcript_id "Ledus.S6G013500.t1"; gene_id "Ledus.S6G013500"
Ledus.S6	AUGUSTUS	exon	5023044	5023601	.	-	.	transcript_id "Ledus.S6G013500.t1"; gene_id "Ledus.S6G013500"
Ledus.S6	AUGUSTUS	start_codon	5023599	5023601	.	-	0	transcript_id "Ledus.S6G013500.t1"; gene_id "Ledus.S6G013500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7882.t1 is derived from g12553.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7608562	7610726	.	+	.	Ledus.S5G066000
Ledus.S5	AUGUSTUS	transcript	7608562	7610726	.	+	.	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	start_codon	7608562	7608564	.	+	0	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	CDS	7608562	7608814	0.98	+	0	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	exon	7608562	7608814	.	+	.	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	intron	7608815	7609547	.	+	.	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	CDS	7609548	7609732	1	+	2	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	exon	7609548	7609732	.	+	.	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	intron	7609733	7609832	.	+	.	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	CDS	7609833	7610180	1	+	0	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	exon	7609833	7610180	.	+	.	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	intron	7610181	7610265	.	+	.	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	CDS	7610266	7610486	1	+	0	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	exon	7610266	7610486	.	+	.	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	intron	7610487	7610569	.	+	.	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	CDS	7610570	7610726	0.99	+	1	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	exon	7610570	7610726	.	+	.	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
Ledus.S5	AUGUSTUS	stop_codon	7610727	7610729	.	+	0	transcript_id "Ledus.S5G066000.t1"; gene_id "Ledus.S5G066000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6041.t1 is derived from g3484.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28642653	28643954	.	-	.	Ledus.S1G346200
Ledus.S1	AUGUSTUS	transcript	28642653	28643954	.	-	.	transcript_id "Ledus.S1G346200.t1"; gene_id "Ledus.S1G346200"
Ledus.S1	AUGUSTUS	stop_codon	28642650	28642652	.	-	0	transcript_id "Ledus.S1G346200.t1"; gene_id "Ledus.S1G346200"
Ledus.S1	AUGUSTUS	CDS	28642653	28642916	1	-	0	transcript_id "Ledus.S1G346200.t1"; gene_id "Ledus.S1G346200"
Ledus.S1	AUGUSTUS	exon	28642653	28642916	.	-	.	transcript_id "Ledus.S1G346200.t1"; gene_id "Ledus.S1G346200"
Ledus.S1	AUGUSTUS	intron	28642917	28642985	.	-	.	transcript_id "Ledus.S1G346200.t1"; gene_id "Ledus.S1G346200"
Ledus.S1	AUGUSTUS	CDS	28642986	28643310	1	-	1	transcript_id "Ledus.S1G346200.t1"; gene_id "Ledus.S1G346200"
Ledus.S1	AUGUSTUS	exon	28642986	28643310	.	-	.	transcript_id "Ledus.S1G346200.t1"; gene_id "Ledus.S1G346200"
Ledus.S1	AUGUSTUS	intron	28643311	28643436	.	-	.	transcript_id "Ledus.S1G346200.t1"; gene_id "Ledus.S1G346200"
Ledus.S1	AUGUSTUS	CDS	28643437	28643954	0.97	-	0	transcript_id "Ledus.S1G346200.t1"; gene_id "Ledus.S1G346200"
Ledus.S1	AUGUSTUS	exon	28643437	28643954	.	-	.	transcript_id "Ledus.S1G346200.t1"; gene_id "Ledus.S1G346200"
Ledus.S1	AUGUSTUS	start_codon	28643952	28643954	.	-	0	transcript_id "Ledus.S1G346200.t1"; gene_id "Ledus.S1G346200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg360.t1 is derived from g7221.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	1933108	1935374	.	+	.	Ledus.S2G024200
Ledus.S2	AUGUSTUS	transcript	1933108	1935374	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	start_codon	1933108	1933110	.	+	0	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	CDS	1933108	1933393	1	+	0	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	exon	1933108	1933393	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	intron	1933394	1933474	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	CDS	1933475	1933584	1	+	2	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	exon	1933475	1933584	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	intron	1933585	1933681	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	CDS	1933682	1933737	1	+	0	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	exon	1933682	1933737	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	intron	1933738	1933822	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	CDS	1933823	1933907	1	+	1	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	exon	1933823	1933907	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	intron	1933908	1934007	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	CDS	1934008	1934055	1	+	0	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	exon	1934008	1934055	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	intron	1934056	1934173	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	CDS	1934174	1934248	1	+	0	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	exon	1934174	1934248	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	intron	1934249	1934348	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	CDS	1934349	1934460	0.99	+	0	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	exon	1934349	1934460	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	intron	1934461	1934563	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	CDS	1934564	1934615	1	+	2	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	exon	1934564	1934615	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	intron	1934616	1934701	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	CDS	1934702	1934753	1	+	1	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	exon	1934702	1934753	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	intron	1934754	1934851	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	CDS	1934852	1934936	0.54	+	0	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	exon	1934852	1934936	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	intron	1934937	1935204	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	CDS	1935205	1935374	0.94	+	2	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	exon	1935205	1935374	.	+	.	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
Ledus.S2	AUGUSTUS	stop_codon	1935375	1935377	.	+	0	transcript_id "Ledus.S2G024200.t1"; gene_id "Ledus.S2G024200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4010.t1 is derived from g1446.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	14053908	14069158	.	-	.	Ledus.S1G143100
Ledus.S1	AUGUSTUS	transcript	14053908	14069158	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	stop_codon	14053905	14053907	.	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14053908	14053975	0.99	-	2	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14053908	14053975	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14053976	14054425	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14054426	14054651	0.98	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14054426	14054651	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14054652	14054738	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14054739	14054885	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14054739	14054885	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14054886	14054971	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14054972	14055055	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14054972	14055055	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14055056	14055175	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14055176	14055298	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14055176	14055298	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14055299	14055436	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14055437	14055532	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14055437	14055532	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14055533	14055638	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14055639	14055721	1	-	2	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14055639	14055721	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14055722	14055870	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14055871	14056019	1	-	1	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14055871	14056019	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14056020	14056112	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14056113	14056219	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14056113	14056219	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14056220	14056353	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14056354	14056443	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14056354	14056443	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14056444	14056525	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14056526	14056654	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14056526	14056654	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14056655	14056734	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14056735	14056899	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14056735	14056899	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14056900	14057053	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14057054	14057182	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14057054	14057182	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14057183	14057339	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14057340	14057671	1	-	2	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14057340	14057671	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14057672	14057809	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14057810	14057906	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14057810	14057906	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14057907	14058088	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14058089	14058204	1	-	2	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14058089	14058204	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14058205	14058283	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14058284	14058359	0.87	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14058284	14058359	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14058360	14058614	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14058615	14058873	0.96	-	1	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14058615	14058873	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14058874	14059006	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14059007	14059102	1	-	1	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14059007	14059102	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14059103	14059188	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14059189	14059274	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14059189	14059274	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14059275	14059428	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14059429	14059715	1	-	2	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14059429	14059715	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14059716	14059807	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14059808	14060257	1	-	2	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14059808	14060257	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14060258	14060520	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14060521	14060731	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14060521	14060731	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14060732	14061022	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14061023	14061075	1	-	2	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14061023	14061075	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14061076	14061340	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14061341	14061498	0.84	-	1	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14061341	14061498	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14061499	14061606	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14061607	14061698	0.85	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14061607	14061698	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14061699	14061833	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14061834	14061950	0.68	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14061834	14061950	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14061951	14062118	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14062119	14062188	0.31	-	1	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14062119	14062188	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14062189	14062273	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14062274	14062926	0.9	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14062274	14062926	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14062927	14062998	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14062999	14063132	1	-	2	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14062999	14063132	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14063133	14063213	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14063214	14063349	1	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14063214	14063349	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14063350	14063437	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14063438	14063919	0.98	-	2	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14063438	14063919	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14063920	14064011	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14064012	14064372	0.9	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14064012	14064372	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14064373	14064543	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14064544	14065413	0.27	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14064544	14065413	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14065414	14065547	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14065548	14065662	1	-	1	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14065548	14065662	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14065663	14065881	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14065882	14068598	0.96	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14065882	14068598	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14068599	14068695	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14068696	14068783	1	-	1	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14068696	14068783	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	intron	14068784	14068865	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	CDS	14068866	14069158	0.87	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	exon	14068866	14069158	.	-	.	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
Ledus.S1	AUGUSTUS	start_codon	14069156	14069158	.	-	0	transcript_id "Ledus.S1G143100.t1"; gene_id "Ledus.S1G143100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8934.t1 is derived from g9964.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3310691	3312477	.	+	.	Ledus.S3G041100
Ledus.S3	AUGUSTUS	transcript	3310691	3312477	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	start_codon	3310691	3310693	.	+	0	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	CDS	3310691	3310766	0.51	+	0	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	exon	3310691	3310766	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	intron	3310767	3310870	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	CDS	3310871	3310942	0.99	+	2	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	exon	3310871	3310942	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	intron	3310943	3311054	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	CDS	3311055	3311178	0.99	+	2	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	exon	3311055	3311178	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	intron	3311179	3311273	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	CDS	3311274	3311361	1	+	1	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	exon	3311274	3311361	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	intron	3311362	3311451	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	CDS	3311452	3311589	1	+	0	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	exon	3311452	3311589	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	intron	3311590	3311751	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	CDS	3311752	3311833	1	+	0	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	exon	3311752	3311833	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	intron	3311834	3311907	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	CDS	3311908	3311927	0.53	+	2	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	exon	3311908	3311927	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	intron	3311928	3312008	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	CDS	3312009	3312069	0.52	+	0	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	exon	3312009	3312069	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	intron	3312070	3312171	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	CDS	3312172	3312314	0.79	+	2	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	exon	3312172	3312314	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	intron	3312315	3312381	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	CDS	3312382	3312477	0.69	+	0	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	exon	3312382	3312477	.	+	.	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
Ledus.S3	AUGUSTUS	stop_codon	3312478	3312480	.	+	0	transcript_id "Ledus.S3G041100.t1"; gene_id "Ledus.S3G041100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8316.t1 is derived from g12988.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10696450	10698381	.	+	.	Ledus.S5G109400
Ledus.S5	AUGUSTUS	transcript	10696450	10698381	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	start_codon	10696450	10696452	.	+	0	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	CDS	10696450	10696520	0.91	+	0	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	exon	10696450	10696520	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	intron	10696521	10697028	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	CDS	10697029	10697179	1	+	1	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	exon	10697029	10697179	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	intron	10697180	10697421	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	CDS	10697422	10697488	0.54	+	0	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	exon	10697422	10697488	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	intron	10697489	10697590	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	CDS	10697591	10697816	0.35	+	2	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	exon	10697591	10697816	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	intron	10697817	10697930	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	CDS	10697931	10698042	0.75	+	1	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	exon	10697931	10698042	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	intron	10698043	10698178	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	CDS	10698179	10698200	0.75	+	0	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	exon	10698179	10698200	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	intron	10698201	10698283	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	CDS	10698284	10698381	0.46	+	2	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	exon	10698284	10698381	.	+	.	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
Ledus.S5	AUGUSTUS	stop_codon	10698382	10698384	.	+	0	transcript_id "Ledus.S5G109400.t1"; gene_id "Ledus.S5G109400"
# This transcript jg3863.t2 is derived from g1299.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3864.t1 is derived from g1300.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13247129	13248174	.	-	.	Ledus.S1G128500
Ledus.S1	AUGUSTUS	transcript	13247129	13248174	.	-	.	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	stop_codon	13247126	13247128	.	-	0	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	CDS	13247129	13247186	0.88	-	1	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	exon	13247129	13247186	.	-	.	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	intron	13247187	13247368	.	-	.	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	CDS	13247369	13247415	0.85	-	0	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	exon	13247369	13247415	.	-	.	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	intron	13247416	13247595	.	-	.	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	CDS	13247596	13247895	0.86	-	0	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	exon	13247596	13247895	.	-	.	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	intron	13247896	13247979	.	-	.	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	CDS	13247980	13248174	0.75	-	0	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	exon	13247980	13248174	.	-	.	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
Ledus.S1	AUGUSTUS	start_codon	13248172	13248174	.	-	0	transcript_id "Ledus.S1G128500.t1"; gene_id "Ledus.S1G128500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7050.t1 is derived from g6581.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1025816	1029522	.	-	.	Ledus.C7G011100
Ledus.C7	AUGUSTUS	transcript	1025816	1029522	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	stop_codon	1025813	1025815	.	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1025816	1025995	0.99	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1025816	1025995	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1025996	1026085	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1026086	1026160	1	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1026086	1026160	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1026161	1026258	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1026259	1026348	1	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1026259	1026348	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1026349	1026530	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1026531	1026605	1	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1026531	1026605	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1026606	1026753	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1026754	1026885	1	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1026754	1026885	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1026886	1026996	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1026997	1027092	1	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1026997	1027092	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1027093	1027290	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1027291	1027389	1	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1027291	1027389	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1027390	1027508	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1027509	1027589	1	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1027509	1027589	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1027590	1027747	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1027748	1027909	1	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1027748	1027909	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1027910	1028027	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1028028	1028102	1	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1028028	1028102	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1028103	1028191	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1028192	1028287	1	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1028192	1028287	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1028288	1028403	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1028404	1028568	0.97	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1028404	1028568	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1028569	1028681	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1028682	1028774	1	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1028682	1028774	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	intron	1028775	1029207	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	CDS	1029208	1029522	0.7	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	exon	1029208	1029522	.	-	.	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
Ledus.C7	AUGUSTUS	start_codon	1029520	1029522	.	-	0	transcript_id "Ledus.C7G011100.t1"; gene_id "Ledus.C7G011100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12352.t1 is derived from g5973.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11362398	11364683	.	+	.	Ledus.S4G150800
Ledus.S4	AUGUSTUS	transcript	11362398	11364683	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	start_codon	11362398	11362400	.	+	0	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	CDS	11362398	11363211	0.98	+	0	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	exon	11362398	11363211	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	intron	11363212	11363302	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	CDS	11363303	11363358	1	+	2	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	exon	11363303	11363358	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	intron	11363359	11363455	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	CDS	11363456	11363725	0.98	+	0	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	exon	11363456	11363725	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	intron	11363726	11363837	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	CDS	11363838	11364074	1	+	0	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	exon	11363838	11364074	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	intron	11364075	11364159	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	CDS	11364160	11364273	0.86	+	0	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	exon	11364160	11364273	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	intron	11364274	11364388	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	CDS	11364389	11364517	0.77	+	0	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	exon	11364389	11364517	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	intron	11364518	11364617	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	CDS	11364618	11364683	1	+	0	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	exon	11364618	11364683	.	+	.	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
Ledus.S4	AUGUSTUS	stop_codon	11364684	11364686	.	+	0	transcript_id "Ledus.S4G150800.t1"; gene_id "Ledus.S4G150800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3263.t1 is derived from g698.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7167582	7174742	.	+	.	Ledus.S1G068400
Ledus.S1	AUGUSTUS	transcript	7167582	7174742	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	start_codon	7167582	7167584	.	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7167582	7167594	0.98	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7167582	7167594	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7167595	7167718	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7167719	7167795	1	+	2	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7167719	7167795	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7167796	7167878	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7167879	7168249	1	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7167879	7168249	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7168250	7168398	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7168399	7168513	1	+	1	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7168399	7168513	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7168514	7168628	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7168629	7168740	0.96	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7168629	7168740	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7168741	7168837	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7168838	7168882	1	+	2	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7168838	7168882	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7168883	7169006	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7169007	7169074	1	+	2	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7169007	7169074	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7169075	7169198	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7169199	7169253	1	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7169199	7169253	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7169254	7169347	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7169348	7169427	1	+	2	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7169348	7169427	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7169428	7169526	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7169527	7169610	1	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7169527	7169610	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7169611	7169691	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7169692	7169805	1	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7169692	7169805	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7169806	7169913	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7169914	7170032	1	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7169914	7170032	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7170033	7170127	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7170128	7170245	1	+	1	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7170128	7170245	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7170246	7170339	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7170340	7170482	1	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7170340	7170482	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7170483	7170565	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7170566	7170704	1	+	1	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7170566	7170704	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7170705	7170792	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7170793	7170872	1	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7170793	7170872	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7170873	7170963	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7170964	7171092	0.94	+	1	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7170964	7171092	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7171093	7171339	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7171340	7171380	0.83	+	1	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7171340	7171380	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7171381	7171465	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7171466	7171478	0.95	+	2	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7171466	7171478	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7171479	7171643	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7171644	7171765	0.95	+	1	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7171644	7171765	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7171766	7171856	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7171857	7171913	0.91	+	2	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7171857	7171913	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7171914	7172037	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7172038	7172054	0.95	+	2	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7172038	7172054	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7172055	7172127	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7172128	7172135	0.96	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7172128	7172135	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7172136	7172454	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7172455	7172487	0.92	+	1	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7172455	7172487	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7172488	7172582	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7172583	7173768	1	+	1	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7172583	7173768	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7173769	7173878	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7173879	7174022	1	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7173879	7174022	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7174023	7174189	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7174190	7174333	0.95	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7174190	7174333	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	intron	7174334	7174436	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	CDS	7174437	7174742	0.78	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	exon	7174437	7174742	.	+	.	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
Ledus.S1	AUGUSTUS	stop_codon	7174743	7174745	.	+	0	transcript_id "Ledus.S1G068400.t1"; gene_id "Ledus.S1G068400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2398.t1 is derived from g9261.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17885348	17888626	.	-	.	Ledus.S2G228000
Ledus.S2	AUGUSTUS	transcript	17885348	17888626	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	stop_codon	17885345	17885347	.	-	0	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	CDS	17885348	17885508	0.79	-	2	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	exon	17885348	17885508	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	intron	17885509	17885600	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	CDS	17885601	17885760	0.88	-	0	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	exon	17885601	17885760	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	intron	17885761	17885881	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	CDS	17885882	17886019	0.71	-	0	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	exon	17885882	17886019	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	intron	17886020	17886151	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	CDS	17886152	17886252	1	-	2	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	exon	17886152	17886252	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	intron	17886253	17886332	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	CDS	17886333	17886578	0.99	-	2	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	exon	17886333	17886578	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	intron	17886579	17886746	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	CDS	17886747	17886990	1	-	0	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	exon	17886747	17886990	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	intron	17886991	17887104	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	CDS	17887105	17887172	1	-	2	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	exon	17887105	17887172	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	intron	17887173	17887258	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	CDS	17887259	17887352	1	-	0	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	exon	17887259	17887352	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	intron	17887353	17887442	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	CDS	17887443	17887594	1	-	2	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	exon	17887443	17887594	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	intron	17887595	17887690	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	CDS	17887691	17887768	1	-	2	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	exon	17887691	17887768	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	intron	17887769	17888143	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	CDS	17888144	17888481	0.69	-	1	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	exon	17888144	17888481	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	intron	17888482	17888600	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	CDS	17888601	17888626	0.59	-	0	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	exon	17888601	17888626	.	-	.	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
Ledus.S2	AUGUSTUS	start_codon	17888624	17888626	.	-	0	transcript_id "Ledus.S2G228000.t1"; gene_id "Ledus.S2G228000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8215.t1 is derived from g12886.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	9953518	9953886	.	-	.	Ledus.S5G099300
Ledus.S5	AUGUSTUS	transcript	9953518	9953886	.	-	.	transcript_id "Ledus.S5G099300.t1"; gene_id "Ledus.S5G099300"
Ledus.S5	AUGUSTUS	stop_codon	9953515	9953517	.	-	0	transcript_id "Ledus.S5G099300.t1"; gene_id "Ledus.S5G099300"
Ledus.S5	AUGUSTUS	CDS	9953518	9953886	1	-	0	transcript_id "Ledus.S5G099300.t1"; gene_id "Ledus.S5G099300"
Ledus.S5	AUGUSTUS	exon	9953518	9953886	.	-	.	transcript_id "Ledus.S5G099300.t1"; gene_id "Ledus.S5G099300"
Ledus.S5	AUGUSTUS	start_codon	9953884	9953886	.	-	0	transcript_id "Ledus.S5G099300.t1"; gene_id "Ledus.S5G099300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10028.t1 is derived from g11058.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	12070637	12071514	.	+	.	Ledus.S3G150500
Ledus.S3	AUGUSTUS	transcript	12070637	12071514	.	+	.	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	start_codon	12070637	12070639	.	+	0	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	CDS	12070637	12070657	0.7	+	0	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	exon	12070637	12070657	.	+	.	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	intron	12070658	12070925	.	+	.	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	CDS	12070926	12071066	1	+	0	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	exon	12070926	12071066	.	+	.	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	intron	12071067	12071197	.	+	.	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	CDS	12071198	12071258	0.59	+	0	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	exon	12071198	12071258	.	+	.	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	intron	12071259	12071339	.	+	.	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	CDS	12071340	12071379	0.39	+	2	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	exon	12071340	12071379	.	+	.	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	intron	12071380	12071504	.	+	.	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	CDS	12071505	12071514	0.4	+	1	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	exon	12071505	12071514	.	+	.	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
Ledus.S3	AUGUSTUS	stop_codon	12071515	12071517	.	+	0	transcript_id "Ledus.S3G150500.t1"; gene_id "Ledus.S3G150500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2177.t1 is derived from g9040.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	15764445	15764885	.	-	.	Ledus.S2G205900
Ledus.S2	AUGUSTUS	transcript	15764445	15764885	.	-	.	transcript_id "Ledus.S2G205900.t1"; gene_id "Ledus.S2G205900"
Ledus.S2	AUGUSTUS	stop_codon	15764442	15764444	.	-	0	transcript_id "Ledus.S2G205900.t1"; gene_id "Ledus.S2G205900"
Ledus.S2	AUGUSTUS	CDS	15764445	15764885	0.99	-	0	transcript_id "Ledus.S2G205900.t1"; gene_id "Ledus.S2G205900"
Ledus.S2	AUGUSTUS	exon	15764445	15764885	.	-	.	transcript_id "Ledus.S2G205900.t1"; gene_id "Ledus.S2G205900"
Ledus.S2	AUGUSTUS	start_codon	15764883	15764885	.	-	0	transcript_id "Ledus.S2G205900.t1"; gene_id "Ledus.S2G205900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg710.t1 is derived from g7571.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	4344486	4345800	.	+	.	Ledus.S2G059200
Ledus.S2	AUGUSTUS	transcript	4344486	4345800	.	+	.	transcript_id "Ledus.S2G059200.t1"; gene_id "Ledus.S2G059200"
Ledus.S2	AUGUSTUS	start_codon	4344486	4344488	.	+	0	transcript_id "Ledus.S2G059200.t1"; gene_id "Ledus.S2G059200"
Ledus.S2	AUGUSTUS	CDS	4344486	4344648	0.97	+	0	transcript_id "Ledus.S2G059200.t1"; gene_id "Ledus.S2G059200"
Ledus.S2	AUGUSTUS	exon	4344486	4344648	.	+	.	transcript_id "Ledus.S2G059200.t1"; gene_id "Ledus.S2G059200"
Ledus.S2	AUGUSTUS	intron	4344649	4344736	.	+	.	transcript_id "Ledus.S2G059200.t1"; gene_id "Ledus.S2G059200"
Ledus.S2	AUGUSTUS	CDS	4344737	4345154	1	+	2	transcript_id "Ledus.S2G059200.t1"; gene_id "Ledus.S2G059200"
Ledus.S2	AUGUSTUS	exon	4344737	4345154	.	+	.	transcript_id "Ledus.S2G059200.t1"; gene_id "Ledus.S2G059200"
Ledus.S2	AUGUSTUS	intron	4345155	4345226	.	+	.	transcript_id "Ledus.S2G059200.t1"; gene_id "Ledus.S2G059200"
Ledus.S2	AUGUSTUS	CDS	4345227	4345800	1	+	1	transcript_id "Ledus.S2G059200.t1"; gene_id "Ledus.S2G059200"
Ledus.S2	AUGUSTUS	exon	4345227	4345800	.	+	.	transcript_id "Ledus.S2G059200.t1"; gene_id "Ledus.S2G059200"
Ledus.S2	AUGUSTUS	stop_codon	4345801	4345803	.	+	0	transcript_id "Ledus.S2G059200.t1"; gene_id "Ledus.S2G059200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 3 different transcripts
# This transcript jg7412.t1 is derived from g12083.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	2139545	2146075	.	+	.	Ledus.S5G019000
Ledus.S5	AUGUSTUS	transcript	2139545	2146075	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	start_codon	2139545	2139547	.	+	0	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2139545	2139624	1	+	0	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2139545	2139624	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2139625	2139712	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2139713	2139896	1	+	1	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2139713	2139896	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2139897	2140020	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2140021	2140185	1	+	0	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2140021	2140185	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2140186	2140283	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2140284	2140521	1	+	0	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2140284	2140521	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2140522	2140648	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2140649	2140685	1	+	2	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2140649	2140685	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2140686	2140759	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2140760	2140806	1	+	1	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2140760	2140806	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2140807	2140896	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2140897	2141015	0.5	+	2	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2140897	2141015	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2141016	2141122	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2141123	2141144	0.95	+	0	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2141123	2141144	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2141145	2141232	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2141233	2141445	1	+	2	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2141233	2141445	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2141446	2141608	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2141609	2141765	1	+	2	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2141609	2141765	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2141766	2141915	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2141916	2141967	1	+	1	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2141916	2141967	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2141968	2142056	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2142057	2142128	1	+	0	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2142057	2142128	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2142129	2142278	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2142279	2142328	0.99	+	0	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2142279	2142328	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2142329	2142422	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2142423	2142540	1	+	1	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2142423	2142540	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2142541	2142745	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2142746	2142809	1	+	0	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2142746	2142809	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2142810	2142899	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2142900	2142983	0.99	+	2	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2142900	2142983	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2142984	2143105	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2143106	2143231	0.94	+	2	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2143106	2143231	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2143232	2143335	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2143336	2143532	1	+	2	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2143336	2143532	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2143533	2143673	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2143674	2143862	1	+	0	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2143674	2143862	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2143863	2143949	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2143950	2144216	0.99	+	0	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2143950	2144216	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2144217	2144338	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2144339	2144388	0.99	+	0	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2144339	2144388	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2144389	2144507	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2144508	2144525	1	+	1	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2144508	2144525	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2144526	2144609	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2144610	2144695	1	+	1	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2144610	2144695	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2144696	2144790	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2144791	2145040	0.88	+	2	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2144791	2145040	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2145041	2145116	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2145117	2145172	1	+	1	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2145117	2145172	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2145173	2145249	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2145250	2145664	1	+	2	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2145250	2145664	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2145665	2145752	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2145753	2145826	0.82	+	1	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2145753	2145826	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2145827	2145926	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2145927	2146075	0.3	+	2	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2145927	2146075	.	+	.	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	stop_codon	2146076	2146078	.	+	0	transcript_id "Ledus.S5G019000.t1"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	transcript	2139545	2146075	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	start_codon	2139545	2139547	.	+	0	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2139545	2139624	0.87	+	0	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2139545	2139624	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2139625	2139844	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2139845	2139896	0.56	+	1	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2139845	2139896	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2139897	2140020	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2140021	2140185	1	+	0	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2140021	2140185	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2140186	2140283	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2140284	2140521	1	+	0	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2140284	2140521	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2140522	2140648	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2140649	2140685	1	+	2	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2140649	2140685	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2140686	2140759	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2140760	2140806	1	+	1	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2140760	2140806	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2140807	2140896	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2140897	2141015	0.52	+	2	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2140897	2141015	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2141016	2141122	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2141123	2141144	0.98	+	0	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2141123	2141144	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2141145	2141232	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2141233	2141445	1	+	2	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2141233	2141445	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2141446	2141608	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2141609	2141765	1	+	2	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2141609	2141765	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2141766	2141915	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2141916	2141967	1	+	1	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2141916	2141967	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2141968	2142056	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2142057	2142128	1	+	0	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2142057	2142128	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2142129	2142278	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2142279	2142328	1	+	0	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2142279	2142328	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2142329	2142422	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2142423	2142540	1	+	1	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2142423	2142540	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2142541	2142745	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2142746	2142809	1	+	0	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2142746	2142809	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2142810	2142899	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2142900	2142983	0.99	+	2	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2142900	2142983	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2142984	2143105	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2143106	2143231	0.91	+	2	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2143106	2143231	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2143232	2143335	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2143336	2143532	0.99	+	2	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2143336	2143532	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2143533	2143673	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2143674	2143862	0.98	+	0	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2143674	2143862	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2143863	2143949	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2143950	2144216	1	+	0	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2143950	2144216	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2144217	2144338	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2144339	2144388	1	+	0	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2144339	2144388	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2144389	2144507	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2144508	2144525	1	+	1	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2144508	2144525	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2144526	2144609	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2144610	2144695	1	+	1	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2144610	2144695	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2144696	2144790	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2144791	2145040	0.88	+	2	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2144791	2145040	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2145041	2145116	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2145117	2145172	1	+	1	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2145117	2145172	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2145173	2145249	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2145250	2145664	0.99	+	2	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2145250	2145664	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2145665	2145752	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2145753	2145826	0.7	+	1	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2145753	2145826	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	intron	2145827	2145926	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	CDS	2145927	2146075	0.19	+	2	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	exon	2145927	2146075	.	+	.	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
Ledus.S5	AUGUSTUS	stop_codon	2146076	2146078	.	+	0	transcript_id "Ledus.S5G019000.t2"; gene_id "Ledus.S5G019000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9622.t1 is derived from g10652.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	8446467	8447001	.	+	.	Ledus.S3G109900
Ledus.S3	AUGUSTUS	transcript	8446467	8447001	.	+	.	transcript_id "Ledus.S3G109900.t1"; gene_id "Ledus.S3G109900"
Ledus.S3	AUGUSTUS	start_codon	8446467	8446469	.	+	0	transcript_id "Ledus.S3G109900.t1"; gene_id "Ledus.S3G109900"
Ledus.S3	AUGUSTUS	CDS	8446467	8446520	0.35	+	0	transcript_id "Ledus.S3G109900.t1"; gene_id "Ledus.S3G109900"
Ledus.S3	AUGUSTUS	exon	8446467	8446520	.	+	.	transcript_id "Ledus.S3G109900.t1"; gene_id "Ledus.S3G109900"
Ledus.S3	AUGUSTUS	intron	8446521	8446815	.	+	.	transcript_id "Ledus.S3G109900.t1"; gene_id "Ledus.S3G109900"
Ledus.S3	AUGUSTUS	CDS	8446816	8447001	0.56	+	0	transcript_id "Ledus.S3G109900.t1"; gene_id "Ledus.S3G109900"
Ledus.S3	AUGUSTUS	exon	8446816	8447001	.	+	.	transcript_id "Ledus.S3G109900.t1"; gene_id "Ledus.S3G109900"
Ledus.S3	AUGUSTUS	stop_codon	8447002	8447004	.	+	0	transcript_id "Ledus.S3G109900.t1"; gene_id "Ledus.S3G109900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg9689.t1 is derived from g10719.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	9049390	9051835	.	-	.	Ledus.S3G116600
Ledus.S3	AUGUSTUS	transcript	9049390	9051835	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	stop_codon	9049387	9049389	.	-	0	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	CDS	9049390	9049704	1	-	0	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	exon	9049390	9049704	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	intron	9049705	9049798	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	CDS	9049799	9049891	1	-	0	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	exon	9049799	9049891	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	intron	9049892	9049977	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	CDS	9049978	9050146	1	-	1	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	exon	9049978	9050146	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	intron	9050147	9050259	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	CDS	9050260	9050517	0.98	-	1	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	exon	9050260	9050517	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	intron	9050518	9050607	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	CDS	9050608	9050756	1	-	0	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	exon	9050608	9050756	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	intron	9050757	9050849	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	CDS	9050850	9051012	1	-	1	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	exon	9050850	9051012	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	intron	9051013	9051090	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	CDS	9051091	9051155	1	-	0	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	exon	9051091	9051155	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	intron	9051156	9051240	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	CDS	9051241	9051476	1	-	2	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	exon	9051241	9051476	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	intron	9051477	9051564	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	CDS	9051565	9051835	0.63	-	0	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	exon	9051565	9051835	.	-	.	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
Ledus.S3	AUGUSTUS	start_codon	9051833	9051835	.	-	0	transcript_id "Ledus.S3G116600.t1"; gene_id "Ledus.S3G116600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8956.t1 is derived from g9986.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	3415160	3417657	.	-	.	Ledus.S3G043300
Ledus.S3	AUGUSTUS	transcript	3415160	3417657	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	stop_codon	3415157	3415159	.	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3415160	3415228	1	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3415160	3415228	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	intron	3415229	3415305	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3415306	3415422	1	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3415306	3415422	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	intron	3415423	3415498	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3415499	3415615	1	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3415499	3415615	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	intron	3415616	3415707	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3415708	3415809	1	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3415708	3415809	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	intron	3415810	3415898	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3415899	3415994	1	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3415899	3415994	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	intron	3415995	3416080	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3416081	3416162	1	-	1	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3416081	3416162	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	intron	3416163	3416282	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3416283	3416397	0.98	-	2	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3416283	3416397	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	intron	3416398	3416500	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3416501	3416552	0.97	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3416501	3416552	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	intron	3416553	3416669	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3416670	3416750	0.97	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3416670	3416750	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	intron	3416751	3416865	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3416866	3417027	1	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3416866	3417027	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	intron	3417028	3417175	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3417176	3417238	1	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3417176	3417238	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	intron	3417239	3417322	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3417323	3417436	1	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3417323	3417436	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	intron	3417437	3417558	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	CDS	3417559	3417657	0.99	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	exon	3417559	3417657	.	-	.	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
Ledus.S3	AUGUSTUS	start_codon	3417655	3417657	.	-	0	transcript_id "Ledus.S3G043300.t1"; gene_id "Ledus.S3G043300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg8333.t1 is derived from g13005.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10800521	10805414	.	+	.	Ledus.S5G111100
Ledus.S5	AUGUSTUS	transcript	10800521	10805414	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	start_codon	10800521	10800523	.	+	0	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10800521	10800755	0.72	+	0	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10800521	10800755	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10800756	10800951	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10800952	10801082	1	+	2	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10800952	10801082	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10801083	10801217	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10801218	10801392	1	+	0	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10801218	10801392	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10801393	10801531	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10801532	10801820	1	+	2	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10801532	10801820	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10801821	10802005	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10802006	10802084	1	+	1	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10802006	10802084	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10802085	10802180	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10802181	10802266	1	+	0	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10802181	10802266	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10802267	10802442	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10802443	10802566	0.91	+	1	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10802443	10802566	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10802567	10802661	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10802662	10802742	1	+	0	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10802662	10802742	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10802743	10802810	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10802811	10803065	1	+	0	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10802811	10803065	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10803066	10803284	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10803285	10803553	0.98	+	0	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10803285	10803553	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10803554	10803631	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10803632	10803691	1	+	1	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10803632	10803691	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10803692	10803895	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10803896	10803963	1	+	1	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10803896	10803963	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10803964	10804073	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10804074	10804179	1	+	2	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10804074	10804179	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10804180	10804269	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10804270	10804411	1	+	1	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10804270	10804411	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10804412	10804550	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10804551	10804649	1	+	0	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10804551	10804649	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10804650	10804746	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10804747	10805011	1	+	0	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10804747	10805011	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10805012	10805092	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10805093	10805160	1	+	2	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10805093	10805160	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10805161	10805246	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10805247	10805414	1	+	0	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10805247	10805414	.	+	.	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	stop_codon	10805415	10805417	.	+	0	transcript_id "Ledus.S5G111100.t1"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	transcript	10800521	10805414	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	start_codon	10800521	10800523	.	+	0	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10800521	10800755	0.67	+	0	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10800521	10800755	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10800756	10800951	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10800952	10801082	1	+	2	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10800952	10801082	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10801083	10801217	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10801218	10801392	1	+	0	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10801218	10801392	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10801393	10801594	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10801595	10801820	1	+	2	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10801595	10801820	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10801821	10802005	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10802006	10802084	1	+	1	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10802006	10802084	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10802085	10802180	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10802181	10802266	1	+	0	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10802181	10802266	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10802267	10802442	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10802443	10802566	0.95	+	1	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10802443	10802566	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10802567	10802661	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10802662	10802742	0.98	+	0	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10802662	10802742	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10802743	10802810	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10802811	10803065	1	+	0	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10802811	10803065	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10803066	10803284	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10803285	10803553	1	+	0	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10803285	10803553	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10803554	10803631	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10803632	10803691	1	+	1	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10803632	10803691	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10803692	10803895	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10803896	10803963	0.98	+	1	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10803896	10803963	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10803964	10804073	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10804074	10804179	1	+	2	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10804074	10804179	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10804180	10804269	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10804270	10804411	1	+	1	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10804270	10804411	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10804412	10804550	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10804551	10804649	1	+	0	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10804551	10804649	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10804650	10804746	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10804747	10805011	0.99	+	0	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10804747	10805011	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10805012	10805092	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10805093	10805160	1	+	2	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10805093	10805160	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	intron	10805161	10805246	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	CDS	10805247	10805414	1	+	0	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	exon	10805247	10805414	.	+	.	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
Ledus.S5	AUGUSTUS	stop_codon	10805415	10805417	.	+	0	transcript_id "Ledus.S5G111100.t2"; gene_id "Ledus.S5G111100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12549.t1 is derived from g6171.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	12835208	12837738	.	+	.	Ledus.S4G170500
Ledus.S4	AUGUSTUS	transcript	12835208	12837738	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	start_codon	12835208	12835210	.	+	0	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	CDS	12835208	12835702	0.57	+	0	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	exon	12835208	12835702	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	intron	12835703	12835932	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	CDS	12835933	12836049	1	+	0	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	exon	12835933	12836049	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	intron	12836050	12836139	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	CDS	12836140	12836280	1	+	0	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	exon	12836140	12836280	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	intron	12836281	12836515	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	CDS	12836516	12836692	1	+	0	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	exon	12836516	12836692	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	intron	12836693	12836785	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	CDS	12836786	12836993	1	+	0	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	exon	12836786	12836993	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	intron	12836994	12837071	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	CDS	12837072	12837259	1	+	2	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	exon	12837072	12837259	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	intron	12837260	12837370	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	CDS	12837371	12837456	1	+	0	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	exon	12837371	12837456	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	intron	12837457	12837596	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	CDS	12837597	12837738	0.96	+	1	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	exon	12837597	12837738	.	+	.	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
Ledus.S4	AUGUSTUS	stop_codon	12837739	12837741	.	+	0	transcript_id "Ledus.S4G170500.t1"; gene_id "Ledus.S4G170500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3258.t1 is derived from g693.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7150971	7151744	.	-	.	Ledus.S1G067900
Ledus.S1	AUGUSTUS	transcript	7150971	7151744	.	-	.	transcript_id "Ledus.S1G067900.t1"; gene_id "Ledus.S1G067900"
Ledus.S1	AUGUSTUS	stop_codon	7150968	7150970	.	-	0	transcript_id "Ledus.S1G067900.t1"; gene_id "Ledus.S1G067900"
Ledus.S1	AUGUSTUS	CDS	7150971	7151744	0.48	-	0	transcript_id "Ledus.S1G067900.t1"; gene_id "Ledus.S1G067900"
Ledus.S1	AUGUSTUS	exon	7150971	7151744	.	-	.	transcript_id "Ledus.S1G067900.t1"; gene_id "Ledus.S1G067900"
Ledus.S1	AUGUSTUS	start_codon	7151742	7151744	.	-	0	transcript_id "Ledus.S1G067900.t1"; gene_id "Ledus.S1G067900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2095.t1 is derived from g8958.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	14709241	14712179	.	+	.	Ledus.S2G197700
Ledus.S2	AUGUSTUS	transcript	14709241	14712179	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	start_codon	14709241	14709243	.	+	0	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	CDS	14709241	14709798	0.9	+	0	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	exon	14709241	14709798	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	intron	14709799	14709966	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	CDS	14709967	14710080	1	+	0	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	exon	14709967	14710080	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	intron	14710081	14710237	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	CDS	14710238	14710339	1	+	0	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	exon	14710238	14710339	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	intron	14710340	14710436	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	CDS	14710437	14710604	0.69	+	0	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	exon	14710437	14710604	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	intron	14710605	14710841	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	CDS	14710842	14711492	0.68	+	0	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	exon	14710842	14711492	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	intron	14711493	14711584	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	CDS	14711585	14711728	1	+	0	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	exon	14711585	14711728	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	intron	14711729	14711822	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	CDS	14711823	14711987	1	+	0	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	exon	14711823	14711987	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	intron	14711988	14712068	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	CDS	14712069	14712179	0.96	+	0	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	exon	14712069	14712179	.	+	.	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
Ledus.S2	AUGUSTUS	stop_codon	14712180	14712182	.	+	0	transcript_id "Ledus.S2G197700.t1"; gene_id "Ledus.S2G197700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 4 different transcripts
# This transcript jg3904.t1 is derived from g1340.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13515271	13517616	.	-	.	Ledus.S1G132500
Ledus.S1	AUGUSTUS	transcript	13515271	13517616	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	stop_codon	13515268	13515270	.	-	0	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13515271	13515584	0.99	-	2	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13515271	13515584	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13515585	13515668	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13515669	13515742	1	-	1	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13515669	13515742	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13515743	13515824	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13515825	13515947	1	-	1	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13515825	13515947	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13515948	13516032	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516033	13516184	1	-	0	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516033	13516184	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13516185	13516251	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516252	13516319	1	-	2	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516252	13516319	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13516320	13516407	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516408	13516427	0.86	-	1	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516408	13516427	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13516428	13516675	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516676	13517616	0.83	-	0	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516676	13517616	.	-	.	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	start_codon	13517614	13517616	.	-	0	transcript_id "Ledus.S1G132500.t1"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	transcript	13515271	13517616	.	-	.	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	stop_codon	13515268	13515270	.	-	0	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13515271	13515584	0.98	-	2	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13515271	13515584	.	-	.	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13515585	13515668	.	-	.	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13515669	13515742	1	-	1	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13515669	13515742	.	-	.	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13515743	13515824	.	-	.	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13515825	13515947	1	-	1	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13515825	13515947	.	-	.	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13515948	13516032	.	-	.	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516033	13516184	0.99	-	0	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516033	13516184	.	-	.	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13516185	13516407	.	-	.	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516408	13516471	0.61	-	1	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516408	13516471	.	-	.	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13516472	13516675	.	-	.	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516676	13517616	0.58	-	0	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516676	13517616	.	-	.	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	start_codon	13517614	13517616	.	-	0	transcript_id "Ledus.S1G132500.t2"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	transcript	13515271	13517616	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	stop_codon	13515268	13515270	.	-	0	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13515271	13515584	0.99	-	2	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13515271	13515584	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13515585	13515668	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13515669	13515742	1	-	1	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13515669	13515742	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13515743	13515824	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13515825	13515947	1	-	1	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13515825	13515947	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13515948	13516032	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516033	13516196	0.66	-	0	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516033	13516196	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13516197	13516251	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516252	13516319	0.67	-	2	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516252	13516319	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13516320	13516407	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516408	13516427	0.56	-	1	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516408	13516427	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13516428	13516675	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516676	13517616	0.71	-	0	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516676	13517616	.	-	.	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	start_codon	13517614	13517616	.	-	0	transcript_id "Ledus.S1G132500.t3"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	transcript	13515271	13516415	.	-	.	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	stop_codon	13515268	13515270	.	-	0	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13515271	13515584	0.97	-	2	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13515271	13515584	.	-	.	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13515585	13515668	.	-	.	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13515669	13515742	1	-	1	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13515669	13515742	.	-	.	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13515743	13515824	.	-	.	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13515825	13515947	1	-	1	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13515825	13515947	.	-	.	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13515948	13516032	.	-	.	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516033	13516184	0.83	-	0	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516033	13516184	.	-	.	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13516185	13516251	.	-	.	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516252	13516312	0.3	-	1	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516252	13516312	.	-	.	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	intron	13516313	13516407	.	-	.	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	CDS	13516408	13516415	0.3	-	0	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	exon	13516408	13516415	.	-	.	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
Ledus.S1	AUGUSTUS	start_codon	13516413	13516415	.	-	0	transcript_id "Ledus.S1G132500.t4"; gene_id "Ledus.S1G132500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12256.t1 is derived from g5876.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	10665272	10674617	.	+	.	Ledus.S4G141200
Ledus.S4	AUGUSTUS	transcript	10665272	10674617	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	start_codon	10665272	10665274	.	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10665272	10665329	0.29	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10665272	10665329	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10665330	10665418	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10665419	10665999	0.38	+	2	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10665419	10665999	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10666000	10666399	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10666400	10666551	1	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10666400	10666551	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10666552	10666640	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10666641	10666728	1	+	1	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10666641	10666728	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10666729	10666808	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10666809	10667072	0.93	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10666809	10667072	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10667073	10667184	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10667185	10667280	0.99	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10667185	10667280	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10667281	10667398	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10667399	10667587	0.99	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10667399	10667587	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10667588	10667730	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10667731	10667890	1	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10667731	10667890	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10667891	10667981	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10667982	10668112	1	+	2	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10667982	10668112	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10668113	10668331	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10668332	10668502	1	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10668332	10668502	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10668503	10668604	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10668605	10668877	0.99	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10668605	10668877	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10668878	10669028	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10669029	10669223	1	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10669029	10669223	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10669224	10669506	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10669507	10669710	0.97	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10669507	10669710	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10669711	10669820	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10669821	10669890	1	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10669821	10669890	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10669891	10670001	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10670002	10670150	1	+	2	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10670002	10670150	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10670151	10670287	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10670288	10670596	0.97	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10670288	10670596	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10670597	10670709	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10670710	10670769	0.96	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10670710	10670769	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10670770	10670857	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10670858	10671037	0.77	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10670858	10671037	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10671038	10671127	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10671128	10671238	1	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10671128	10671238	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10671239	10671314	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10671315	10671799	0.8	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10671315	10671799	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10671800	10672022	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10672023	10672272	0.66	+	1	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10672023	10672272	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10672273	10672449	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10672450	10672538	0.96	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10672450	10672538	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10672539	10672627	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10672628	10672793	0.93	+	1	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10672628	10672793	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	intron	10672794	10672889	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	CDS	10672890	10674617	1	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	exon	10672890	10674617	.	+	.	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
Ledus.S4	AUGUSTUS	stop_codon	10674618	10674620	.	+	0	transcript_id "Ledus.S4G141200.t1"; gene_id "Ledus.S4G141200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7939.t1 is derived from g12610.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	7979597	7980046	.	+	.	Ledus.S5G071700
Ledus.S5	AUGUSTUS	transcript	7979597	7980046	.	+	.	transcript_id "Ledus.S5G071700.t1"; gene_id "Ledus.S5G071700"
Ledus.S5	AUGUSTUS	start_codon	7979597	7979599	.	+	0	transcript_id "Ledus.S5G071700.t1"; gene_id "Ledus.S5G071700"
Ledus.S5	AUGUSTUS	CDS	7979597	7980046	0.74	+	0	transcript_id "Ledus.S5G071700.t1"; gene_id "Ledus.S5G071700"
Ledus.S5	AUGUSTUS	exon	7979597	7980046	.	+	.	transcript_id "Ledus.S5G071700.t1"; gene_id "Ledus.S5G071700"
Ledus.S5	AUGUSTUS	stop_codon	7980047	7980049	.	+	0	transcript_id "Ledus.S5G071700.t1"; gene_id "Ledus.S5G071700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8335.t1 is derived from g13007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	10816453	10817922	.	+	.	Ledus.S5G111300
Ledus.S5	AUGUSTUS	transcript	10816453	10817922	.	+	.	transcript_id "Ledus.S5G111300.t1"; gene_id "Ledus.S5G111300"
Ledus.S5	AUGUSTUS	start_codon	10816453	10816455	.	+	0	transcript_id "Ledus.S5G111300.t1"; gene_id "Ledus.S5G111300"
Ledus.S5	AUGUSTUS	CDS	10816453	10817922	0.91	+	0	transcript_id "Ledus.S5G111300.t1"; gene_id "Ledus.S5G111300"
Ledus.S5	AUGUSTUS	exon	10816453	10817922	.	+	.	transcript_id "Ledus.S5G111300.t1"; gene_id "Ledus.S5G111300"
Ledus.S5	AUGUSTUS	stop_codon	10817923	10817925	.	+	0	transcript_id "Ledus.S5G111300.t1"; gene_id "Ledus.S5G111300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12831.t1 is derived from g9532.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C16	AUGUSTUS	gene	45664	49281	.	-	.	Ledus.C16G000200
Ledus.C16	AUGUSTUS	transcript	45664	49281	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	stop_codon	45661	45663	.	-	0	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	CDS	45664	45711	0.62	-	0	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	exon	45664	45711	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	intron	45712	45835	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	CDS	45836	46717	0.53	-	0	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	exon	45836	46717	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	intron	46718	46869	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	CDS	46870	47144	0.45	-	2	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	exon	46870	47144	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	intron	47145	47215	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	CDS	47216	47384	0.3	-	0	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	exon	47216	47384	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	intron	47385	47615	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	CDS	47616	47927	0.64	-	0	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	exon	47616	47927	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	intron	47928	48119	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	CDS	48120	48199	0.3	-	2	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	exon	48120	48199	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	intron	48200	48369	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	CDS	48370	48531	0.87	-	2	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	exon	48370	48531	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	intron	48532	48791	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	CDS	48792	49281	0.56	-	0	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	exon	48792	49281	.	-	.	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
Ledus.C16	AUGUSTUS	start_codon	49279	49281	.	-	0	transcript_id "Ledus.C16G000200.t1"; gene_id "Ledus.C16G000200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6103.t1 is derived from g3546.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	28916842	28919345	.	-	.	Ledus.S1G352400
Ledus.S1	AUGUSTUS	transcript	28916842	28919345	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	stop_codon	28916839	28916841	.	-	0	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	CDS	28916842	28916913	1	-	0	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	exon	28916842	28916913	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	intron	28916914	28917013	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	CDS	28917014	28917112	1	-	0	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	exon	28917014	28917112	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	intron	28917113	28917254	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	CDS	28917255	28917296	1	-	0	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	exon	28917255	28917296	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	intron	28917297	28917409	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	CDS	28917410	28917451	1	-	0	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	exon	28917410	28917451	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	intron	28917452	28917579	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	CDS	28917580	28917675	1	-	0	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	exon	28917580	28917675	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	intron	28917676	28917803	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	CDS	28917804	28917927	1	-	1	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	exon	28917804	28917927	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	intron	28917928	28918085	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	CDS	28918086	28918427	1	-	1	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	exon	28918086	28918427	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	intron	28918428	28918601	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	CDS	28918602	28918752	1	-	2	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	exon	28918602	28918752	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	intron	28918753	28918969	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	CDS	28918970	28919004	1	-	1	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	exon	28918970	28919004	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	intron	28919005	28919181	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	CDS	28919182	28919345	0.69	-	0	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	exon	28919182	28919345	.	-	.	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
Ledus.S1	AUGUSTUS	start_codon	28919343	28919345	.	-	0	transcript_id "Ledus.S1G352400.t1"; gene_id "Ledus.S1G352400"
# This transcript jg11190.t2 is derived from g4808.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11191.t1 is derived from g4809.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2539663	2542961	.	-	.	Ledus.S4G034700
Ledus.S4	AUGUSTUS	transcript	2539663	2542961	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	stop_codon	2539660	2539662	.	-	0	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	CDS	2539663	2540114	1	-	2	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	exon	2539663	2540114	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	intron	2540115	2540202	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	CDS	2540203	2540287	1	-	0	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	exon	2540203	2540287	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	intron	2540288	2540374	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	CDS	2540375	2540464	1	-	0	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	exon	2540375	2540464	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	intron	2540465	2540558	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	CDS	2540559	2540626	1	-	2	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	exon	2540559	2540626	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	intron	2540627	2540711	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	CDS	2540712	2540764	1	-	1	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	exon	2540712	2540764	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	intron	2540765	2540876	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	CDS	2540877	2541138	1	-	2	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	exon	2540877	2541138	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	intron	2541139	2541220	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	CDS	2541221	2541520	1	-	2	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	exon	2541221	2541520	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	intron	2541521	2541606	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	CDS	2541607	2542146	1	-	2	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	exon	2541607	2542146	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	intron	2542147	2542220	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	CDS	2542221	2542775	1	-	2	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	exon	2542221	2542775	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	intron	2542776	2542867	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	CDS	2542868	2542961	0.8	-	0	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	exon	2542868	2542961	.	-	.	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
Ledus.S4	AUGUSTUS	start_codon	2542959	2542961	.	-	0	transcript_id "Ledus.S4G034700.t1"; gene_id "Ledus.S4G034700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8721.t1 is derived from g9751.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	1576976	1578523	.	+	.	Ledus.S3G019800
Ledus.S3	AUGUSTUS	transcript	1576976	1578523	.	+	.	transcript_id "Ledus.S3G019800.t1"; gene_id "Ledus.S3G019800"
Ledus.S3	AUGUSTUS	start_codon	1576976	1576978	.	+	0	transcript_id "Ledus.S3G019800.t1"; gene_id "Ledus.S3G019800"
Ledus.S3	AUGUSTUS	CDS	1576976	1577106	0.94	+	0	transcript_id "Ledus.S3G019800.t1"; gene_id "Ledus.S3G019800"
Ledus.S3	AUGUSTUS	exon	1576976	1577106	.	+	.	transcript_id "Ledus.S3G019800.t1"; gene_id "Ledus.S3G019800"
Ledus.S3	AUGUSTUS	intron	1577107	1577784	.	+	.	transcript_id "Ledus.S3G019800.t1"; gene_id "Ledus.S3G019800"
Ledus.S3	AUGUSTUS	CDS	1577785	1578523	0.92	+	1	transcript_id "Ledus.S3G019800.t1"; gene_id "Ledus.S3G019800"
Ledus.S3	AUGUSTUS	exon	1577785	1578523	.	+	.	transcript_id "Ledus.S3G019800.t1"; gene_id "Ledus.S3G019800"
Ledus.S3	AUGUSTUS	stop_codon	1578524	1578526	.	+	0	transcript_id "Ledus.S3G019800.t1"; gene_id "Ledus.S3G019800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg11362.t1 is derived from g4980.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	3822256	3823888	.	+	.	Ledus.S4G051800
Ledus.S4	AUGUSTUS	transcript	3822416	3823888	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	start_codon	3822416	3822418	.	+	0	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3822416	3822430	1	+	0	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3822416	3822430	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	intron	3822431	3822517	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3822518	3822623	1	+	0	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3822518	3822623	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	intron	3822624	3822713	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3822714	3822883	1	+	2	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3822714	3822883	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	intron	3822884	3822969	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3822970	3823161	1	+	0	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3822970	3823161	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	intron	3823162	3823231	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3823232	3823394	1	+	0	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3823232	3823394	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	intron	3823395	3823477	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3823478	3823673	1	+	2	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3823478	3823673	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	intron	3823674	3823749	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3823750	3823888	0.81	+	1	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3823750	3823888	.	+	.	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	stop_codon	3823889	3823891	.	+	0	transcript_id "Ledus.S4G051800.t1"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	transcript	3822256	3823888	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	start_codon	3822256	3822258	.	+	0	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3822256	3822430	0.79	+	0	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3822256	3822430	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	intron	3822431	3822517	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3822518	3822623	1	+	2	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3822518	3822623	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	intron	3822624	3822696	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3822697	3822883	1	+	1	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3822697	3822883	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	intron	3822884	3822969	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3822970	3823161	1	+	0	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3822970	3823161	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	intron	3823162	3823231	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3823232	3823394	1	+	0	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3823232	3823394	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	intron	3823395	3823477	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3823478	3823673	1	+	2	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3823478	3823673	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	intron	3823674	3823749	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	CDS	3823750	3823888	0.65	+	1	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	exon	3823750	3823888	.	+	.	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
Ledus.S4	AUGUSTUS	stop_codon	3823889	3823891	.	+	0	transcript_id "Ledus.S4G051800.t2"; gene_id "Ledus.S4G051800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg190.t1 is derived from g7051.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	674868	675292	.	-	.	Ledus.S2G007200
Ledus.S2	AUGUSTUS	transcript	674868	675292	.	-	.	transcript_id "Ledus.S2G007200.t1"; gene_id "Ledus.S2G007200"
Ledus.S2	AUGUSTUS	stop_codon	674865	674867	.	-	0	transcript_id "Ledus.S2G007200.t1"; gene_id "Ledus.S2G007200"
Ledus.S2	AUGUSTUS	CDS	674868	674872	0.55	-	2	transcript_id "Ledus.S2G007200.t1"; gene_id "Ledus.S2G007200"
Ledus.S2	AUGUSTUS	exon	674868	674872	.	-	.	transcript_id "Ledus.S2G007200.t1"; gene_id "Ledus.S2G007200"
Ledus.S2	AUGUSTUS	intron	674873	674970	.	-	.	transcript_id "Ledus.S2G007200.t1"; gene_id "Ledus.S2G007200"
Ledus.S2	AUGUSTUS	CDS	674971	675292	0.57	-	0	transcript_id "Ledus.S2G007200.t1"; gene_id "Ledus.S2G007200"
Ledus.S2	AUGUSTUS	exon	674971	675292	.	-	.	transcript_id "Ledus.S2G007200.t1"; gene_id "Ledus.S2G007200"
Ledus.S2	AUGUSTUS	start_codon	675290	675292	.	-	0	transcript_id "Ledus.S2G007200.t1"; gene_id "Ledus.S2G007200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11688.t1 is derived from g5307.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	6008367	6015706	.	-	.	Ledus.S4G084400
Ledus.S4	AUGUSTUS	transcript	6008367	6015706	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	stop_codon	6008364	6008366	.	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6008367	6008482	0.61	-	2	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6008367	6008482	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6008483	6008628	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6008629	6008755	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6008629	6008755	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6008756	6008845	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6008846	6009085	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6008846	6009085	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6009086	6009174	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6009175	6009443	0.86	-	2	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6009175	6009443	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6009444	6009562	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6009563	6009645	0.87	-	1	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6009563	6009645	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6009646	6009788	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6009789	6009973	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6009789	6009973	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6009974	6010091	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6010092	6010248	1	-	1	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6010092	6010248	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6010249	6010336	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6010337	6010405	1	-	1	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6010337	6010405	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6010406	6010490	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6010491	6010616	1	-	1	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6010491	6010616	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6010617	6010697	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6010698	6010777	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6010698	6010777	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6010778	6010869	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6010870	6010982	1	-	2	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6010870	6010982	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6010983	6011077	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6011078	6011156	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6011078	6011156	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6011157	6011238	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6011239	6011403	0.91	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6011239	6011403	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6011404	6011489	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6011490	6011611	0.99	-	2	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6011490	6011611	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6011612	6011732	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6011733	6011808	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6011733	6011808	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6011809	6011907	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6011908	6012048	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6011908	6012048	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6012049	6012152	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6012153	6012380	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6012153	6012380	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6012381	6012510	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6012511	6012612	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6012511	6012612	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6012613	6012695	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6012696	6012884	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6012696	6012884	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6012885	6012988	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6012989	6013171	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6012989	6013171	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6013172	6013254	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6013255	6013431	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6013255	6013431	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6013432	6013551	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6013552	6013665	0.94	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6013552	6013665	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6013666	6013804	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6013805	6013959	0.99	-	2	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6013805	6013959	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6013960	6014137	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6014138	6014306	0.99	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6014138	6014306	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6014307	6014420	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6014421	6014510	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6014421	6014510	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6014511	6014604	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6014605	6014749	1	-	1	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6014605	6014749	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6014750	6014843	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6014844	6014929	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6014844	6014929	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6014930	6015025	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6015026	6015114	0.97	-	2	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6015026	6015114	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6015115	6015237	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6015238	6015367	1	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6015238	6015367	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	intron	6015368	6015448	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	CDS	6015449	6015706	0.18	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	exon	6015449	6015706	.	-	.	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
Ledus.S4	AUGUSTUS	start_codon	6015704	6015706	.	-	0	transcript_id "Ledus.S4G084400.t1"; gene_id "Ledus.S4G084400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2882.t1 is derived from g317.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	4382773	4384857	.	-	.	Ledus.S1G030300
Ledus.S1	AUGUSTUS	transcript	4382773	4384857	.	-	.	transcript_id "Ledus.S1G030300.t1"; gene_id "Ledus.S1G030300"
Ledus.S1	AUGUSTUS	stop_codon	4382770	4382772	.	-	0	transcript_id "Ledus.S1G030300.t1"; gene_id "Ledus.S1G030300"
Ledus.S1	AUGUSTUS	CDS	4382773	4384085	0.9	-	2	transcript_id "Ledus.S1G030300.t1"; gene_id "Ledus.S1G030300"
Ledus.S1	AUGUSTUS	exon	4382773	4384085	.	-	.	transcript_id "Ledus.S1G030300.t1"; gene_id "Ledus.S1G030300"
Ledus.S1	AUGUSTUS	intron	4384086	4384175	.	-	.	transcript_id "Ledus.S1G030300.t1"; gene_id "Ledus.S1G030300"
Ledus.S1	AUGUSTUS	CDS	4384176	4384405	1	-	1	transcript_id "Ledus.S1G030300.t1"; gene_id "Ledus.S1G030300"
Ledus.S1	AUGUSTUS	exon	4384176	4384405	.	-	.	transcript_id "Ledus.S1G030300.t1"; gene_id "Ledus.S1G030300"
Ledus.S1	AUGUSTUS	intron	4384406	4384486	.	-	.	transcript_id "Ledus.S1G030300.t1"; gene_id "Ledus.S1G030300"
Ledus.S1	AUGUSTUS	CDS	4384487	4384857	1	-	0	transcript_id "Ledus.S1G030300.t1"; gene_id "Ledus.S1G030300"
Ledus.S1	AUGUSTUS	exon	4384487	4384857	.	-	.	transcript_id "Ledus.S1G030300.t1"; gene_id "Ledus.S1G030300"
Ledus.S1	AUGUSTUS	start_codon	4384855	4384857	.	-	0	transcript_id "Ledus.S1G030300.t1"; gene_id "Ledus.S1G030300"
# This transcript jg10022.t2 is derived from g11052.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10023.t1 is derived from g11053.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	11952354	11956309	.	-	.	Ledus.S3G150000
Ledus.S3	AUGUSTUS	transcript	11952354	11956309	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	stop_codon	11952351	11952353	.	-	0	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11952354	11952382	0.98	-	2	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11952354	11952382	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11952383	11952465	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11952466	11952481	0.98	-	0	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11952466	11952481	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11952482	11952545	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11952546	11952587	1	-	0	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11952546	11952587	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11952588	11952665	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11952666	11952776	1	-	0	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11952666	11952776	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11952777	11953559	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11953560	11953667	1	-	0	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11953560	11953667	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11953668	11953759	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11953760	11953885	0.99	-	0	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11953760	11953885	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11953886	11953991	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11953992	11954136	0.99	-	1	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11953992	11954136	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11954137	11954367	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11954368	11954459	1	-	0	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11954368	11954459	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11954460	11954615	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11954616	11954683	1	-	2	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11954616	11954683	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11954684	11954779	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11954780	11954853	1	-	1	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11954780	11954853	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11954854	11955077	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11955078	11955147	1	-	2	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11955078	11955147	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11955148	11955378	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11955379	11955562	1	-	0	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11955379	11955562	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11955563	11955631	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11955632	11955785	1	-	1	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11955632	11955785	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11955786	11955924	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11955925	11956017	1	-	1	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11955925	11956017	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	intron	11956018	11956124	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	CDS	11956125	11956309	1	-	0	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	exon	11956125	11956309	.	-	.	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
Ledus.S3	AUGUSTUS	start_codon	11956307	11956309	.	-	0	transcript_id "Ledus.S3G150000.t1"; gene_id "Ledus.S3G150000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5751.t1 is derived from g3191.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	26480777	26487000	.	+	.	Ledus.S1G317200
Ledus.S1	AUGUSTUS	transcript	26480777	26487000	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	start_codon	26480777	26480779	.	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26480777	26480779	0.89	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26480777	26480779	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26480780	26481245	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26481246	26481266	1	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26481246	26481266	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26481267	26481365	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26481366	26481427	1	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26481366	26481427	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26481428	26481536	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26481537	26481591	1	+	1	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26481537	26481591	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26481592	26481734	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26481735	26481771	1	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26481735	26481771	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26481772	26481925	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26481926	26482251	1	+	2	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26481926	26482251	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26482252	26482342	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26482343	26482474	1	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26482343	26482474	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26482475	26482616	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26482617	26482765	1	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26482617	26482765	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26482766	26482977	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26482978	26483046	1	+	1	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26482978	26483046	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26483047	26483184	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26483185	26483335	1	+	1	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26483185	26483335	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26483336	26483429	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26483430	26483495	1	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26483430	26483495	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26483496	26483667	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26483668	26483856	1	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26483668	26483856	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26483857	26483939	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26483940	26484080	1	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26483940	26484080	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26484081	26484250	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26484251	26484325	1	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26484251	26484325	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26484326	26484476	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26484477	26484653	1	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26484477	26484653	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26484654	26484820	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26484821	26484912	1	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26484821	26484912	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26484913	26484988	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26484989	26485105	1	+	1	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26484989	26485105	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26485106	26485208	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26485209	26485323	1	+	1	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26485209	26485323	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26485324	26485422	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26485423	26485503	0.35	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26485423	26485503	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26485504	26485597	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26485598	26485794	0.38	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26485598	26485794	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26485795	26485913	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26485914	26486007	1	+	1	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26485914	26486007	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26486008	26486134	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26486135	26486244	1	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26486135	26486244	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26486245	26486383	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26486384	26486513	1	+	1	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26486384	26486513	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26486514	26486643	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26486644	26486783	0.88	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26486644	26486783	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	intron	26486784	26486927	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	CDS	26486928	26487000	0.44	+	1	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	exon	26486928	26487000	.	+	.	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
Ledus.S1	AUGUSTUS	stop_codon	26487001	26487003	.	+	0	transcript_id "Ledus.S1G317200.t1"; gene_id "Ledus.S1G317200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8502.t1 is derived from g13174.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	12305176	12306108	.	-	.	Ledus.S5G128000
Ledus.S5	AUGUSTUS	transcript	12305176	12306108	.	-	.	transcript_id "Ledus.S5G128000.t1"; gene_id "Ledus.S5G128000"
Ledus.S5	AUGUSTUS	stop_codon	12305173	12305175	.	-	0	transcript_id "Ledus.S5G128000.t1"; gene_id "Ledus.S5G128000"
Ledus.S5	AUGUSTUS	CDS	12305176	12306108	1	-	0	transcript_id "Ledus.S5G128000.t1"; gene_id "Ledus.S5G128000"
Ledus.S5	AUGUSTUS	exon	12305176	12306108	.	-	.	transcript_id "Ledus.S5G128000.t1"; gene_id "Ledus.S5G128000"
Ledus.S5	AUGUSTUS	start_codon	12306106	12306108	.	-	0	transcript_id "Ledus.S5G128000.t1"; gene_id "Ledus.S5G128000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11459.t1 is derived from g5077.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	4418705	4419547	.	-	.	Ledus.S4G061500
Ledus.S4	AUGUSTUS	transcript	4418705	4419547	.	-	.	transcript_id "Ledus.S4G061500.t1"; gene_id "Ledus.S4G061500"
Ledus.S4	AUGUSTUS	stop_codon	4418702	4418704	.	-	0	transcript_id "Ledus.S4G061500.t1"; gene_id "Ledus.S4G061500"
Ledus.S4	AUGUSTUS	CDS	4418705	4419547	0.72	-	0	transcript_id "Ledus.S4G061500.t1"; gene_id "Ledus.S4G061500"
Ledus.S4	AUGUSTUS	exon	4418705	4419547	.	-	.	transcript_id "Ledus.S4G061500.t1"; gene_id "Ledus.S4G061500"
Ledus.S4	AUGUSTUS	start_codon	4419545	4419547	.	-	0	transcript_id "Ledus.S4G061500.t1"; gene_id "Ledus.S4G061500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5482.t1 is derived from g2921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24487209	24488270	.	-	.	Ledus.S1G290300
Ledus.S1	AUGUSTUS	transcript	24487209	24488270	.	-	.	transcript_id "Ledus.S1G290300.t1"; gene_id "Ledus.S1G290300"
Ledus.S1	AUGUSTUS	stop_codon	24487206	24487208	.	-	0	transcript_id "Ledus.S1G290300.t1"; gene_id "Ledus.S1G290300"
Ledus.S1	AUGUSTUS	CDS	24487209	24487350	1	-	1	transcript_id "Ledus.S1G290300.t1"; gene_id "Ledus.S1G290300"
Ledus.S1	AUGUSTUS	exon	24487209	24487350	.	-	.	transcript_id "Ledus.S1G290300.t1"; gene_id "Ledus.S1G290300"
Ledus.S1	AUGUSTUS	intron	24487351	24487446	.	-	.	transcript_id "Ledus.S1G290300.t1"; gene_id "Ledus.S1G290300"
Ledus.S1	AUGUSTUS	CDS	24487447	24488270	0.72	-	0	transcript_id "Ledus.S1G290300.t1"; gene_id "Ledus.S1G290300"
Ledus.S1	AUGUSTUS	exon	24487447	24488270	.	-	.	transcript_id "Ledus.S1G290300.t1"; gene_id "Ledus.S1G290300"
Ledus.S1	AUGUSTUS	start_codon	24488268	24488270	.	-	0	transcript_id "Ledus.S1G290300.t1"; gene_id "Ledus.S1G290300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6616.t1 is derived from g4059.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32748295	32748830	.	-	.	Ledus.S1G403700
Ledus.S1	AUGUSTUS	transcript	32748295	32748830	.	-	.	transcript_id "Ledus.S1G403700.t1"; gene_id "Ledus.S1G403700"
Ledus.S1	AUGUSTUS	stop_codon	32748292	32748294	.	-	0	transcript_id "Ledus.S1G403700.t1"; gene_id "Ledus.S1G403700"
Ledus.S1	AUGUSTUS	CDS	32748295	32748513	1	-	0	transcript_id "Ledus.S1G403700.t1"; gene_id "Ledus.S1G403700"
Ledus.S1	AUGUSTUS	exon	32748295	32748513	.	-	.	transcript_id "Ledus.S1G403700.t1"; gene_id "Ledus.S1G403700"
Ledus.S1	AUGUSTUS	intron	32748514	32748626	.	-	.	transcript_id "Ledus.S1G403700.t1"; gene_id "Ledus.S1G403700"
Ledus.S1	AUGUSTUS	CDS	32748627	32748830	0.96	-	0	transcript_id "Ledus.S1G403700.t1"; gene_id "Ledus.S1G403700"
Ledus.S1	AUGUSTUS	exon	32748627	32748830	.	-	.	transcript_id "Ledus.S1G403700.t1"; gene_id "Ledus.S1G403700"
Ledus.S1	AUGUSTUS	start_codon	32748828	32748830	.	-	0	transcript_id "Ledus.S1G403700.t1"; gene_id "Ledus.S1G403700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11216.t1 is derived from g4834.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2768575	2769111	.	-	.	Ledus.S4G037200
Ledus.S4	AUGUSTUS	transcript	2768575	2769111	.	-	.	transcript_id "Ledus.S4G037200.t1"; gene_id "Ledus.S4G037200"
Ledus.S4	AUGUSTUS	stop_codon	2768572	2768574	.	-	0	transcript_id "Ledus.S4G037200.t1"; gene_id "Ledus.S4G037200"
Ledus.S4	AUGUSTUS	CDS	2768575	2769111	0.62	-	0	transcript_id "Ledus.S4G037200.t1"; gene_id "Ledus.S4G037200"
Ledus.S4	AUGUSTUS	exon	2768575	2769111	.	-	.	transcript_id "Ledus.S4G037200.t1"; gene_id "Ledus.S4G037200"
Ledus.S4	AUGUSTUS	start_codon	2769109	2769111	.	-	0	transcript_id "Ledus.S4G037200.t1"; gene_id "Ledus.S4G037200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3619.t1 is derived from g1055.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	10233767	10234698	.	-	.	Ledus.S1G104000
Ledus.S1	AUGUSTUS	transcript	10233767	10234698	.	-	.	transcript_id "Ledus.S1G104000.t1"; gene_id "Ledus.S1G104000"
Ledus.S1	AUGUSTUS	stop_codon	10233764	10233766	.	-	0	transcript_id "Ledus.S1G104000.t1"; gene_id "Ledus.S1G104000"
Ledus.S1	AUGUSTUS	CDS	10233767	10233797	0.87	-	1	transcript_id "Ledus.S1G104000.t1"; gene_id "Ledus.S1G104000"
Ledus.S1	AUGUSTUS	exon	10233767	10233797	.	-	.	transcript_id "Ledus.S1G104000.t1"; gene_id "Ledus.S1G104000"
Ledus.S1	AUGUSTUS	intron	10233798	10233886	.	-	.	transcript_id "Ledus.S1G104000.t1"; gene_id "Ledus.S1G104000"
Ledus.S1	AUGUSTUS	CDS	10233887	10234698	1	-	0	transcript_id "Ledus.S1G104000.t1"; gene_id "Ledus.S1G104000"
Ledus.S1	AUGUSTUS	exon	10233887	10234698	.	-	.	transcript_id "Ledus.S1G104000.t1"; gene_id "Ledus.S1G104000"
Ledus.S1	AUGUSTUS	start_codon	10234696	10234698	.	-	0	transcript_id "Ledus.S1G104000.t1"; gene_id "Ledus.S1G104000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg4370.t1 is derived from g1806.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	16673079	16677260	.	+	.	Ledus.S1G179100
Ledus.S1	AUGUSTUS	transcript	16675752	16677260	.	+	.	transcript_id "Ledus.S1G179100.t1"; gene_id "Ledus.S1G179100"
Ledus.S1	AUGUSTUS	start_codon	16675752	16675754	.	+	0	transcript_id "Ledus.S1G179100.t1"; gene_id "Ledus.S1G179100"
Ledus.S1	AUGUSTUS	CDS	16675752	16677260	1	+	0	transcript_id "Ledus.S1G179100.t1"; gene_id "Ledus.S1G179100"
Ledus.S1	AUGUSTUS	exon	16675752	16677260	.	+	.	transcript_id "Ledus.S1G179100.t1"; gene_id "Ledus.S1G179100"
Ledus.S1	AUGUSTUS	stop_codon	16677261	16677263	.	+	0	transcript_id "Ledus.S1G179100.t1"; gene_id "Ledus.S1G179100"
Ledus.S1	AUGUSTUS	transcript	16673079	16677260	.	+	.	transcript_id "Ledus.S1G179100.t2"; gene_id "Ledus.S1G179100"
Ledus.S1	AUGUSTUS	start_codon	16673079	16673081	.	+	0	transcript_id "Ledus.S1G179100.t2"; gene_id "Ledus.S1G179100"
Ledus.S1	AUGUSTUS	CDS	16673079	16677260	0.98	+	0	transcript_id "Ledus.S1G179100.t2"; gene_id "Ledus.S1G179100"
Ledus.S1	AUGUSTUS	exon	16673079	16677260	.	+	.	transcript_id "Ledus.S1G179100.t2"; gene_id "Ledus.S1G179100"
Ledus.S1	AUGUSTUS	stop_codon	16677261	16677263	.	+	0	transcript_id "Ledus.S1G179100.t2"; gene_id "Ledus.S1G179100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6892.t1 is derived from g4336.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	35012720	35016994	.	+	.	Ledus.S1G431300
Ledus.S1	AUGUSTUS	transcript	35012720	35016994	.	+	.	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	start_codon	35012720	35012722	.	+	0	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	CDS	35012720	35013415	0.93	+	0	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	exon	35012720	35013415	.	+	.	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	intron	35013416	35013525	.	+	.	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	CDS	35013526	35013655	0.85	+	0	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	exon	35013526	35013655	.	+	.	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	intron	35013656	35013754	.	+	.	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	CDS	35013755	35016282	0.99	+	2	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	exon	35013755	35016282	.	+	.	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	intron	35016283	35016391	.	+	.	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	CDS	35016392	35016994	0.98	+	0	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	exon	35016392	35016994	.	+	.	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
Ledus.S1	AUGUSTUS	stop_codon	35016995	35016997	.	+	0	transcript_id "Ledus.S1G431300.t1"; gene_id "Ledus.S1G431300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg501.t1 is derived from g7362.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2947590	2948061	.	-	.	Ledus.S2G038300
Ledus.S2	AUGUSTUS	transcript	2947590	2948061	.	-	.	transcript_id "Ledus.S2G038300.t1"; gene_id "Ledus.S2G038300"
Ledus.S2	AUGUSTUS	stop_codon	2947587	2947589	.	-	0	transcript_id "Ledus.S2G038300.t1"; gene_id "Ledus.S2G038300"
Ledus.S2	AUGUSTUS	CDS	2947590	2947787	0.66	-	0	transcript_id "Ledus.S2G038300.t1"; gene_id "Ledus.S2G038300"
Ledus.S2	AUGUSTUS	exon	2947590	2947787	.	-	.	transcript_id "Ledus.S2G038300.t1"; gene_id "Ledus.S2G038300"
Ledus.S2	AUGUSTUS	intron	2947788	2947914	.	-	.	transcript_id "Ledus.S2G038300.t1"; gene_id "Ledus.S2G038300"
Ledus.S2	AUGUSTUS	CDS	2947915	2948061	0.26	-	0	transcript_id "Ledus.S2G038300.t1"; gene_id "Ledus.S2G038300"
Ledus.S2	AUGUSTUS	exon	2947915	2948061	.	-	.	transcript_id "Ledus.S2G038300.t1"; gene_id "Ledus.S2G038300"
Ledus.S2	AUGUSTUS	start_codon	2948059	2948061	.	-	0	transcript_id "Ledus.S2G038300.t1"; gene_id "Ledus.S2G038300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3928.t1 is derived from g1364.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	13584369	13586042	.	+	.	Ledus.S1G134900
Ledus.S1	AUGUSTUS	transcript	13584369	13586042	.	+	.	transcript_id "Ledus.S1G134900.t1"; gene_id "Ledus.S1G134900"
Ledus.S1	AUGUSTUS	start_codon	13584369	13584371	.	+	0	transcript_id "Ledus.S1G134900.t1"; gene_id "Ledus.S1G134900"
Ledus.S1	AUGUSTUS	CDS	13584369	13586042	0.95	+	0	transcript_id "Ledus.S1G134900.t1"; gene_id "Ledus.S1G134900"
Ledus.S1	AUGUSTUS	exon	13584369	13586042	.	+	.	transcript_id "Ledus.S1G134900.t1"; gene_id "Ledus.S1G134900"
Ledus.S1	AUGUSTUS	stop_codon	13586043	13586045	.	+	0	transcript_id "Ledus.S1G134900.t1"; gene_id "Ledus.S1G134900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1543.t1 is derived from g8404.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10869067	10872168	.	-	.	Ledus.S2G142500
Ledus.S2	AUGUSTUS	transcript	10869067	10872168	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	stop_codon	10869064	10869066	.	-	0	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	CDS	10869067	10870655	0.84	-	2	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	exon	10869067	10870655	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	intron	10870656	10870734	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	CDS	10870735	10870873	0.75	-	0	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	exon	10870735	10870873	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	intron	10870874	10871034	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	CDS	10871035	10871050	0.77	-	1	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	exon	10871035	10871050	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	intron	10871051	10871120	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	CDS	10871121	10871178	0.84	-	2	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	exon	10871121	10871178	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	intron	10871179	10871274	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	CDS	10871275	10871326	1	-	0	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	exon	10871275	10871326	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	intron	10871327	10871455	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	CDS	10871456	10871561	0.95	-	1	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	exon	10871456	10871561	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	intron	10871562	10871681	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	CDS	10871682	10871936	0.99	-	1	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	exon	10871682	10871936	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	intron	10871937	10872043	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	CDS	10872044	10872168	0.79	-	0	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	exon	10872044	10872168	.	-	.	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
Ledus.S2	AUGUSTUS	start_codon	10872166	10872168	.	-	0	transcript_id "Ledus.S2G142500.t1"; gene_id "Ledus.S2G142500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg12293.t1 is derived from g5913.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	11068607	11073336	.	+	.	Ledus.S4G144900
Ledus.S4	AUGUSTUS	transcript	11068607	11073336	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	start_codon	11068607	11068609	.	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11068607	11068681	0.98	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11068607	11068681	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11068682	11069139	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11069140	11069266	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11069140	11069266	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11069267	11069451	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11069452	11069507	1	+	2	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11069452	11069507	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11069508	11069648	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11069649	11069705	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11069649	11069705	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11069706	11069876	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11069877	11069988	0.88	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11069877	11069988	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11069989	11070090	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11070091	11070128	1	+	2	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11070091	11070128	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11070129	11070221	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11070222	11070323	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11070222	11070323	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11070324	11070614	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11070615	11070671	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11070615	11070671	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11070672	11070842	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11070843	11070914	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11070843	11070914	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11070915	11071020	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11071021	11071122	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11071021	11071122	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11071123	11071237	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11071238	11071300	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11071238	11071300	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11071301	11071386	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11071387	11071519	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11071387	11071519	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11071520	11071645	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11071646	11071752	1	+	2	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11071646	11071752	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11071753	11072018	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11072019	11072213	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11072019	11072213	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11072214	11072306	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11072307	11072393	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11072307	11072393	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11072394	11072478	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11072479	11072583	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11072479	11072583	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11072584	11072673	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11072674	11072771	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11072674	11072771	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11072772	11072877	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11072878	11072956	1	+	1	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11072878	11072956	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11072957	11073047	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11073048	11073136	1	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11073048	11073136	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	intron	11073137	11073224	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	CDS	11073225	11073336	1	+	1	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	exon	11073225	11073336	.	+	.	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
Ledus.S4	AUGUSTUS	stop_codon	11073337	11073339	.	+	0	transcript_id "Ledus.S4G144900.t1"; gene_id "Ledus.S4G144900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6970.t1 is derived from g6501.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	484444	487902	.	-	.	Ledus.C7G003100
Ledus.C7	AUGUSTUS	transcript	484444	487902	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	stop_codon	484441	484443	.	-	0	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	CDS	484444	484554	0.63	-	0	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	exon	484444	484554	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	intron	484555	484654	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	CDS	484655	484966	1	-	0	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	exon	484655	484966	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	intron	484967	485088	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	CDS	485089	485313	1	-	0	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	exon	485089	485313	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	intron	485314	485428	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	CDS	485429	485587	1	-	0	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	exon	485429	485587	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	intron	485588	485705	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	CDS	485706	485809	1	-	2	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	exon	485706	485809	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	intron	485810	485913	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	CDS	485914	486031	1	-	0	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	exon	485914	486031	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	intron	486032	486209	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	CDS	486210	486298	1	-	2	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	exon	486210	486298	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	intron	486299	486604	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	CDS	486605	486680	1	-	0	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	exon	486605	486680	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	intron	486681	487028	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	CDS	487029	487232	1	-	0	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	exon	487029	487232	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	intron	487233	487614	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	CDS	487615	487902	1	-	0	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	exon	487615	487902	.	-	.	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
Ledus.C7	AUGUSTUS	start_codon	487900	487902	.	-	0	transcript_id "Ledus.C7G003100.t1"; gene_id "Ledus.C7G003100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg5410.t1 is derived from g2849.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	24023971	24026603	.	-	.	Ledus.S1G283100
Ledus.S1	AUGUSTUS	transcript	24023971	24026603	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	stop_codon	24023968	24023970	.	-	0	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24023971	24024024	0.98	-	0	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24023971	24024024	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24024025	24024124	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24024125	24024167	1	-	1	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24024125	24024167	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24024168	24024245	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24024246	24024340	1	-	0	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24024246	24024340	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24024341	24024422	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24024423	24024511	1	-	2	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24024423	24024511	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24024512	24024622	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24024623	24024698	1	-	0	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24024623	24024698	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24024699	24024797	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24024798	24024944	1	-	0	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24024798	24024944	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24024945	24025022	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24025023	24025127	1	-	0	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24025023	24025127	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24025128	24025284	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24025285	24025428	1	-	0	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24025285	24025428	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24025429	24025680	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24025681	24025750	1	-	1	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24025681	24025750	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24025751	24025896	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24025897	24025972	1	-	2	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24025897	24025972	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24025973	24026052	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24026053	24026142	1	-	2	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24026053	24026142	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24026143	24026228	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24026229	24026271	1	-	0	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24026229	24026271	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24026272	24026408	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24026409	24026603	0.77	-	0	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24026409	24026603	.	-	.	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	start_codon	24026601	24026603	.	-	0	transcript_id "Ledus.S1G283100.t1"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	transcript	24023971	24026603	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	stop_codon	24023968	24023970	.	-	0	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24023971	24024024	1	-	0	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24023971	24024024	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24024025	24024124	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24024125	24024170	1	-	1	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24024125	24024170	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24024171	24024245	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24024246	24024340	1	-	0	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24024246	24024340	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24024341	24024422	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24024423	24024511	1	-	2	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24024423	24024511	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24024512	24024622	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24024623	24024698	1	-	0	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24024623	24024698	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24024699	24024797	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24024798	24024944	1	-	0	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24024798	24024944	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24024945	24025022	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24025023	24025127	1	-	0	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24025023	24025127	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24025128	24025284	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24025285	24025428	1	-	0	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24025285	24025428	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24025429	24025680	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24025681	24025750	1	-	1	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24025681	24025750	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24025751	24025896	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24025897	24025972	1	-	2	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24025897	24025972	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24025973	24026052	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24026053	24026142	1	-	2	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24026053	24026142	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24026143	24026228	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24026229	24026271	1	-	0	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24026229	24026271	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	intron	24026272	24026408	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	CDS	24026409	24026603	0.74	-	0	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	exon	24026409	24026603	.	-	.	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
Ledus.S1	AUGUSTUS	start_codon	24026601	24026603	.	-	0	transcript_id "Ledus.S1G283100.t2"; gene_id "Ledus.S1G283100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg8055.t1 is derived from g12726.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	8844702	8846485	.	-	.	Ledus.S5G083300
Ledus.S5	AUGUSTUS	transcript	8844702	8846485	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	stop_codon	8844699	8844701	.	-	0	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	CDS	8844702	8844728	0.98	-	0	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	exon	8844702	8844728	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	intron	8844729	8844814	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	CDS	8844815	8845087	0.98	-	0	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	exon	8844815	8845087	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	intron	8845088	8845171	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	CDS	8845172	8845279	1	-	0	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	exon	8845172	8845279	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	intron	8845280	8845374	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	CDS	8845375	8845606	1	-	1	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	exon	8845375	8845606	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	intron	8845607	8845698	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	CDS	8845699	8845923	1	-	1	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	exon	8845699	8845923	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	intron	8845924	8846038	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	CDS	8846039	8846234	0.91	-	2	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	exon	8846039	8846234	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	intron	8846235	8846355	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	CDS	8846356	8846485	1	-	0	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	exon	8846356	8846485	.	-	.	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
Ledus.S5	AUGUSTUS	start_codon	8846483	8846485	.	-	0	transcript_id "Ledus.S5G083300.t1"; gene_id "Ledus.S5G083300"
# This transcript jg4676.t2 is derived from g2114.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg4677.t1 is derived from g2115.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	18939777	18941303	.	-	.	Ledus.S1G209800
Ledus.S1	AUGUSTUS	transcript	18939777	18941303	.	-	.	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	stop_codon	18939774	18939776	.	-	0	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	CDS	18939777	18939797	0.95	-	0	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	exon	18939777	18939797	.	-	.	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	intron	18939798	18939970	.	-	.	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	CDS	18939971	18940029	0.95	-	2	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	exon	18939971	18940029	.	-	.	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	intron	18940030	18940425	.	-	.	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	CDS	18940426	18940561	0.72	-	0	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	exon	18940426	18940561	.	-	.	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	intron	18940562	18940658	.	-	.	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	CDS	18940659	18940717	0.95	-	2	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	exon	18940659	18940717	.	-	.	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	intron	18940718	18940826	.	-	.	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	CDS	18940827	18940938	0.98	-	0	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	exon	18940827	18940938	.	-	.	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	intron	18940939	18941072	.	-	.	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	CDS	18941073	18941303	1	-	0	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	exon	18941073	18941303	.	-	.	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
Ledus.S1	AUGUSTUS	start_codon	18941301	18941303	.	-	0	transcript_id "Ledus.S1G209800.t1"; gene_id "Ledus.S1G209800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3253.t1 is derived from g688.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7135815	7137586	.	-	.	Ledus.S1G067400
Ledus.S1	AUGUSTUS	transcript	7135815	7137586	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	stop_codon	7135812	7135814	.	-	0	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	CDS	7135815	7135885	1	-	2	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	exon	7135815	7135885	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	intron	7135886	7135976	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	CDS	7135977	7136053	1	-	1	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	exon	7135977	7136053	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	intron	7136054	7136126	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	CDS	7136127	7136188	1	-	0	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	exon	7136127	7136188	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	intron	7136189	7136273	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	CDS	7136274	7136357	1	-	0	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	exon	7136274	7136357	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	intron	7136358	7136436	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	CDS	7136437	7136508	1	-	0	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	exon	7136437	7136508	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	intron	7136509	7136589	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	CDS	7136590	7136658	1	-	0	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	exon	7136590	7136658	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	intron	7136659	7136794	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	CDS	7136795	7136858	1	-	1	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	exon	7136795	7136858	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	intron	7136859	7136943	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	CDS	7136944	7136983	1	-	2	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	exon	7136944	7136983	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	intron	7136984	7137111	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	CDS	7137112	7137178	1	-	0	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	exon	7137112	7137178	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	intron	7137179	7137307	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	CDS	7137308	7137586	0.95	-	0	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	exon	7137308	7137586	.	-	.	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
Ledus.S1	AUGUSTUS	start_codon	7137584	7137586	.	-	0	transcript_id "Ledus.S1G067400.t1"; gene_id "Ledus.S1G067400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7692.t1 is derived from g12363.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S5	AUGUSTUS	gene	5225929	5226970	.	+	.	Ledus.S5G047000
Ledus.S5	AUGUSTUS	transcript	5225929	5226970	.	+	.	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	start_codon	5225929	5225931	.	+	0	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	CDS	5225929	5226001	0.96	+	0	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	exon	5225929	5226001	.	+	.	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	intron	5226002	5226180	.	+	.	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	CDS	5226181	5226291	0.99	+	2	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	exon	5226181	5226291	.	+	.	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	intron	5226292	5226457	.	+	.	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	CDS	5226458	5226533	1	+	2	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	exon	5226458	5226533	.	+	.	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	intron	5226534	5226619	.	+	.	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	CDS	5226620	5226799	1	+	1	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	exon	5226620	5226799	.	+	.	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	intron	5226800	5226876	.	+	.	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	CDS	5226877	5226970	1	+	1	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	exon	5226877	5226970	.	+	.	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
Ledus.S5	AUGUSTUS	stop_codon	5226971	5226973	.	+	0	transcript_id "Ledus.S5G047000.t1"; gene_id "Ledus.S5G047000"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg5253.t1 is derived from g2692.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	22749243	22751910	.	-	.	Ledus.S1G267400
Ledus.S1	AUGUSTUS	transcript	22749243	22751910	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	stop_codon	22749240	22749242	.	-	0	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	CDS	22749243	22749323	1	-	0	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	exon	22749243	22749323	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	intron	22749324	22749535	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	CDS	22749536	22749763	1	-	0	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	exon	22749536	22749763	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	intron	22749764	22749880	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	CDS	22749881	22750105	0.98	-	0	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	exon	22749881	22750105	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	intron	22750106	22750235	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	CDS	22750236	22750379	1	-	0	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	exon	22750236	22750379	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	intron	22750380	22750482	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	CDS	22750483	22750598	1	-	2	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	exon	22750483	22750598	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	intron	22750599	22750701	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	CDS	22750702	22751063	0.96	-	1	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	exon	22750702	22751063	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	intron	22751064	22751137	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	CDS	22751138	22751283	1	-	0	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	exon	22751138	22751283	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	intron	22751284	22751382	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	CDS	22751383	22751538	1	-	0	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	exon	22751383	22751538	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	intron	22751539	22751613	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	CDS	22751614	22751910	0.97	-	0	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	exon	22751614	22751910	.	-	.	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
Ledus.S1	AUGUSTUS	start_codon	22751908	22751910	.	-	0	transcript_id "Ledus.S1G267400.t1"; gene_id "Ledus.S1G267400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg1542.t1 is derived from g8403.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	10867417	10868657	.	-	.	Ledus.S2G142400
Ledus.S2	AUGUSTUS	transcript	10867417	10868657	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	stop_codon	10867414	10867416	.	-	0	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	CDS	10867417	10867439	1	-	2	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	exon	10867417	10867439	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	intron	10867440	10867546	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	CDS	10867547	10867600	1	-	2	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	exon	10867547	10867600	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	intron	10867601	10867683	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	CDS	10867684	10867759	1	-	0	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	exon	10867684	10867759	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	intron	10867760	10867835	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	CDS	10867836	10867867	1	-	2	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	exon	10867836	10867867	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	intron	10867868	10867957	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	CDS	10867958	10868053	1	-	2	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	exon	10867958	10868053	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	intron	10868054	10868122	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	CDS	10868123	10868162	1	-	0	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	exon	10868123	10868162	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	intron	10868163	10868249	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	CDS	10868250	10868311	1	-	2	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	exon	10868250	10868311	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	intron	10868312	10868398	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	CDS	10868399	10868657	0.71	-	0	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	exon	10868399	10868657	.	-	.	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
Ledus.S2	AUGUSTUS	start_codon	10868655	10868657	.	-	0	transcript_id "Ledus.S2G142400.t1"; gene_id "Ledus.S2G142400"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg7150.t1 is derived from g6681.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.C7	AUGUSTUS	gene	1781189	1781579	.	-	.	Ledus.C7G021100
Ledus.C7	AUGUSTUS	transcript	1781189	1781579	.	-	.	transcript_id "Ledus.C7G021100.t1"; gene_id "Ledus.C7G021100"
Ledus.C7	AUGUSTUS	stop_codon	1781186	1781188	.	-	0	transcript_id "Ledus.C7G021100.t1"; gene_id "Ledus.C7G021100"
Ledus.C7	AUGUSTUS	CDS	1781189	1781298	1	-	2	transcript_id "Ledus.C7G021100.t1"; gene_id "Ledus.C7G021100"
Ledus.C7	AUGUSTUS	exon	1781189	1781298	.	-	.	transcript_id "Ledus.C7G021100.t1"; gene_id "Ledus.C7G021100"
Ledus.C7	AUGUSTUS	intron	1781299	1781397	.	-	.	transcript_id "Ledus.C7G021100.t1"; gene_id "Ledus.C7G021100"
Ledus.C7	AUGUSTUS	CDS	1781398	1781458	1	-	0	transcript_id "Ledus.C7G021100.t1"; gene_id "Ledus.C7G021100"
Ledus.C7	AUGUSTUS	exon	1781398	1781458	.	-	.	transcript_id "Ledus.C7G021100.t1"; gene_id "Ledus.C7G021100"
Ledus.C7	AUGUSTUS	intron	1781459	1781549	.	-	.	transcript_id "Ledus.C7G021100.t1"; gene_id "Ledus.C7G021100"
Ledus.C7	AUGUSTUS	CDS	1781550	1781579	0.42	-	0	transcript_id "Ledus.C7G021100.t1"; gene_id "Ledus.C7G021100"
Ledus.C7	AUGUSTUS	exon	1781550	1781579	.	-	.	transcript_id "Ledus.C7G021100.t1"; gene_id "Ledus.C7G021100"
Ledus.C7	AUGUSTUS	start_codon	1781577	1781579	.	-	0	transcript_id "Ledus.C7G021100.t1"; gene_id "Ledus.C7G021100"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10439.t1 is derived from g11469.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	15156098	15158751	.	+	.	Ledus.S3G191600
Ledus.S3	AUGUSTUS	transcript	15156098	15158751	.	+	.	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	start_codon	15156098	15156100	.	+	0	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	CDS	15156098	15156241	0.45	+	0	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	exon	15156098	15156241	.	+	.	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	intron	15156242	15156326	.	+	.	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	CDS	15156327	15156431	0.64	+	0	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	exon	15156327	15156431	.	+	.	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	intron	15156432	15156513	.	+	.	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	CDS	15156514	15156852	0.59	+	0	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	exon	15156514	15156852	.	+	.	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	intron	15156853	15156955	.	+	.	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	CDS	15156956	15157322	0.75	+	0	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	exon	15156956	15157322	.	+	.	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	intron	15157323	15157423	.	+	.	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	CDS	15157424	15158143	0.47	+	2	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	exon	15157424	15158143	.	+	.	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	intron	15158144	15158317	.	+	.	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	CDS	15158318	15158751	0.46	+	2	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	exon	15158318	15158751	.	+	.	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
Ledus.S3	AUGUSTUS	stop_codon	15158752	15158754	.	+	0	transcript_id "Ledus.S3G191600.t1"; gene_id "Ledus.S3G191600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg146.t1 is derived from g7007.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	267815	268819	.	-	.	Ledus.S2G002800
Ledus.S2	AUGUSTUS	transcript	267815	268819	.	-	.	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	stop_codon	267812	267814	.	-	0	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	CDS	267815	267958	1	-	0	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	exon	267815	267958	.	-	.	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	intron	267959	268055	.	-	.	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	CDS	268056	268104	1	-	1	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	exon	268056	268104	.	-	.	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	intron	268105	268186	.	-	.	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	CDS	268187	268355	1	-	2	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	exon	268187	268355	.	-	.	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	intron	268356	268457	.	-	.	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	CDS	268458	268525	0.97	-	1	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	exon	268458	268525	.	-	.	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	intron	268526	268721	.	-	.	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	CDS	268722	268819	0.96	-	0	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	exon	268722	268819	.	-	.	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
Ledus.S2	AUGUSTUS	start_codon	268817	268819	.	-	0	transcript_id "Ledus.S2G002800.t1"; gene_id "Ledus.S2G002800"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2321.t1 is derived from g9184.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	17154839	17157015	.	-	.	Ledus.S2G220300
Ledus.S2	AUGUSTUS	transcript	17154839	17157015	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	stop_codon	17154836	17154838	.	-	0	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	CDS	17154839	17154929	0.82	-	1	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	exon	17154839	17154929	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	intron	17154930	17155002	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	CDS	17155003	17155045	0.84	-	2	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	exon	17155003	17155045	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	intron	17155046	17155412	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	CDS	17155413	17155495	0.99	-	1	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	exon	17155413	17155495	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	intron	17155496	17155592	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	CDS	17155593	17155683	0.99	-	2	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	exon	17155593	17155683	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	intron	17155684	17155844	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	CDS	17155845	17156004	1	-	0	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	exon	17155845	17156004	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	intron	17156005	17156145	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	CDS	17156146	17156296	1	-	1	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	exon	17156146	17156296	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	intron	17156297	17156374	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	CDS	17156375	17156526	1	-	0	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	exon	17156375	17156526	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	intron	17156527	17156738	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	CDS	17156739	17156863	1	-	2	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	exon	17156739	17156863	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	intron	17156864	17156999	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	CDS	17157000	17157015	1	-	0	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	exon	17157000	17157015	.	-	.	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
Ledus.S2	AUGUSTUS	start_codon	17157013	17157015	.	-	0	transcript_id "Ledus.S2G220300.t1"; gene_id "Ledus.S2G220300"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg13033.t1 is derived from g6843.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S6	AUGUSTUS	gene	3579115	3579333	.	+	.	Ledus.S6G009500
Ledus.S6	AUGUSTUS	transcript	3579115	3579333	.	+	.	transcript_id "Ledus.S6G009500.t1"; gene_id "Ledus.S6G009500"
Ledus.S6	AUGUSTUS	start_codon	3579115	3579117	.	+	0	transcript_id "Ledus.S6G009500.t1"; gene_id "Ledus.S6G009500"
Ledus.S6	AUGUSTUS	CDS	3579115	3579333	0.75	+	0	transcript_id "Ledus.S6G009500.t1"; gene_id "Ledus.S6G009500"
Ledus.S6	AUGUSTUS	exon	3579115	3579333	.	+	.	transcript_id "Ledus.S6G009500.t1"; gene_id "Ledus.S6G009500"
Ledus.S6	AUGUSTUS	stop_codon	3579334	3579336	.	+	0	transcript_id "Ledus.S6G009500.t1"; gene_id "Ledus.S6G009500"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg3271.t1 is derived from g706.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	7197180	7199128	.	-	.	Ledus.S1G069200
Ledus.S1	AUGUSTUS	transcript	7197180	7199128	.	-	.	transcript_id "Ledus.S1G069200.t1"; gene_id "Ledus.S1G069200"
Ledus.S1	AUGUSTUS	stop_codon	7197177	7197179	.	-	0	transcript_id "Ledus.S1G069200.t1"; gene_id "Ledus.S1G069200"
Ledus.S1	AUGUSTUS	CDS	7197180	7198756	0.98	-	2	transcript_id "Ledus.S1G069200.t1"; gene_id "Ledus.S1G069200"
Ledus.S1	AUGUSTUS	exon	7197180	7198756	.	-	.	transcript_id "Ledus.S1G069200.t1"; gene_id "Ledus.S1G069200"
Ledus.S1	AUGUSTUS	intron	7198757	7198896	.	-	.	transcript_id "Ledus.S1G069200.t1"; gene_id "Ledus.S1G069200"
Ledus.S1	AUGUSTUS	CDS	7198897	7198983	0.98	-	2	transcript_id "Ledus.S1G069200.t1"; gene_id "Ledus.S1G069200"
Ledus.S1	AUGUSTUS	exon	7198897	7198983	.	-	.	transcript_id "Ledus.S1G069200.t1"; gene_id "Ledus.S1G069200"
Ledus.S1	AUGUSTUS	intron	7198984	7199049	.	-	.	transcript_id "Ledus.S1G069200.t1"; gene_id "Ledus.S1G069200"
Ledus.S1	AUGUSTUS	CDS	7199050	7199128	0.72	-	0	transcript_id "Ledus.S1G069200.t1"; gene_id "Ledus.S1G069200"
Ledus.S1	AUGUSTUS	exon	7199050	7199128	.	-	.	transcript_id "Ledus.S1G069200.t1"; gene_id "Ledus.S1G069200"
Ledus.S1	AUGUSTUS	start_codon	7199126	7199128	.	-	0	transcript_id "Ledus.S1G069200.t1"; gene_id "Ledus.S1G069200"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg2626.t1 is derived from g59.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	770902	772703	.	+	.	Ledus.S1G004700
Ledus.S1	AUGUSTUS	transcript	770902	772703	.	+	.	transcript_id "Ledus.S1G004700.t1"; gene_id "Ledus.S1G004700"
Ledus.S1	AUGUSTUS	start_codon	770902	770904	.	+	0	transcript_id "Ledus.S1G004700.t1"; gene_id "Ledus.S1G004700"
Ledus.S1	AUGUSTUS	CDS	770902	771254	0.42	+	0	transcript_id "Ledus.S1G004700.t1"; gene_id "Ledus.S1G004700"
Ledus.S1	AUGUSTUS	exon	770902	771254	.	+	.	transcript_id "Ledus.S1G004700.t1"; gene_id "Ledus.S1G004700"
Ledus.S1	AUGUSTUS	intron	771255	771406	.	+	.	transcript_id "Ledus.S1G004700.t1"; gene_id "Ledus.S1G004700"
Ledus.S1	AUGUSTUS	CDS	771407	772008	0.98	+	1	transcript_id "Ledus.S1G004700.t1"; gene_id "Ledus.S1G004700"
Ledus.S1	AUGUSTUS	exon	771407	772008	.	+	.	transcript_id "Ledus.S1G004700.t1"; gene_id "Ledus.S1G004700"
Ledus.S1	AUGUSTUS	intron	772009	772173	.	+	.	transcript_id "Ledus.S1G004700.t1"; gene_id "Ledus.S1G004700"
Ledus.S1	AUGUSTUS	CDS	772174	772703	1	+	2	transcript_id "Ledus.S1G004700.t1"; gene_id "Ledus.S1G004700"
Ledus.S1	AUGUSTUS	exon	772174	772703	.	+	.	transcript_id "Ledus.S1G004700.t1"; gene_id "Ledus.S1G004700"
Ledus.S1	AUGUSTUS	stop_codon	772704	772706	.	+	0	transcript_id "Ledus.S1G004700.t1"; gene_id "Ledus.S1G004700"
# overlap start --------------------------------------------------------------------------------
# this overlap has 2 different transcripts
# This transcript jg6664.t1 is derived from g4107.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	32952200	32953543	.	-	.	Ledus.S1G408500
Ledus.S1	AUGUSTUS	transcript	32952200	32953543	.	-	.	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	stop_codon	32952197	32952199	.	-	0	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	CDS	32952200	32952750	0.91	-	2	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	exon	32952200	32952750	.	-	.	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	intron	32952751	32952939	.	-	.	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	CDS	32952940	32953088	0.68	-	1	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	exon	32952940	32953088	.	-	.	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	intron	32953089	32953186	.	-	.	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	CDS	32953187	32953269	0.53	-	0	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	exon	32953187	32953269	.	-	.	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	intron	32953270	32953474	.	-	.	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	CDS	32953475	32953543	0.38	-	0	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	exon	32953475	32953543	.	-	.	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	start_codon	32953541	32953543	.	-	0	transcript_id "Ledus.S1G408500.t1"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	transcript	32952288	32953543	.	-	.	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	stop_codon	32952285	32952287	.	-	0	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	CDS	32952288	32952392	0.54	-	0	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	exon	32952288	32952392	.	-	.	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	intron	32952393	32952568	.	-	.	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	CDS	32952569	32952750	0.45	-	2	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	exon	32952569	32952750	.	-	.	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	intron	32952751	32952939	.	-	.	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	CDS	32952940	32953088	0.57	-	1	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	exon	32952940	32953088	.	-	.	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	intron	32953089	32953186	.	-	.	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	CDS	32953187	32953269	0.49	-	0	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	exon	32953187	32953269	.	-	.	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	intron	32953270	32953474	.	-	.	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	CDS	32953475	32953543	0.39	-	0	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	exon	32953475	32953543	.	-	.	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
Ledus.S1	AUGUSTUS	start_codon	32953541	32953543	.	-	0	transcript_id "Ledus.S1G408500.t2"; gene_id "Ledus.S1G408500"
# This transcript jg6477.t2 is derived from g3920.t2 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
# This transcript jg6477.t3 is derived from g3920.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 1 other predicted genes
# the core of this joined transcript has priority 2
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg6478.t1 is derived from g3921.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S1	AUGUSTUS	gene	31490857	31491261	.	-	.	Ledus.S1G389900
Ledus.S1	AUGUSTUS	transcript	31490857	31491261	.	-	.	transcript_id "Ledus.S1G389900.t1"; gene_id "Ledus.S1G389900"
Ledus.S1	AUGUSTUS	stop_codon	31490854	31490856	.	-	0	transcript_id "Ledus.S1G389900.t1"; gene_id "Ledus.S1G389900"
Ledus.S1	AUGUSTUS	CDS	31490857	31491003	0.99	-	0	transcript_id "Ledus.S1G389900.t1"; gene_id "Ledus.S1G389900"
Ledus.S1	AUGUSTUS	exon	31490857	31491003	.	-	.	transcript_id "Ledus.S1G389900.t1"; gene_id "Ledus.S1G389900"
Ledus.S1	AUGUSTUS	intron	31491004	31491078	.	-	.	transcript_id "Ledus.S1G389900.t1"; gene_id "Ledus.S1G389900"
Ledus.S1	AUGUSTUS	CDS	31491079	31491261	0.96	-	0	transcript_id "Ledus.S1G389900.t1"; gene_id "Ledus.S1G389900"
Ledus.S1	AUGUSTUS	exon	31491079	31491261	.	-	.	transcript_id "Ledus.S1G389900.t1"; gene_id "Ledus.S1G389900"
Ledus.S1	AUGUSTUS	start_codon	31491259	31491261	.	-	0	transcript_id "Ledus.S1G389900.t1"; gene_id "Ledus.S1G389900"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg414.t1 is derived from g7275.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S2	AUGUSTUS	gene	2312442	2316011	.	+	.	Ledus.S2G029600
Ledus.S2	AUGUSTUS	transcript	2312442	2316011	.	+	.	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	start_codon	2312442	2312444	.	+	0	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	CDS	2312442	2312463	0.9	+	0	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	exon	2312442	2312463	.	+	.	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	intron	2312464	2312625	.	+	.	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	CDS	2312626	2314207	1	+	2	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	exon	2312626	2314207	.	+	.	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	intron	2314208	2314305	.	+	.	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	CDS	2314306	2315282	0.99	+	1	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	exon	2314306	2315282	.	+	.	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	intron	2315283	2315368	.	+	.	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	CDS	2315369	2315720	0.85	+	2	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	exon	2315369	2315720	.	+	.	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	intron	2315721	2315830	.	+	.	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	CDS	2315831	2315883	0.74	+	1	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	exon	2315831	2315883	.	+	.	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	intron	2315884	2315982	.	+	.	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	CDS	2315983	2316011	0.64	+	2	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	exon	2315983	2316011	.	+	.	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
Ledus.S2	AUGUSTUS	stop_codon	2316012	2316014	.	+	0	transcript_id "Ledus.S2G029600.t1"; gene_id "Ledus.S2G029600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg10769.t1 is derived from g11801.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S3	AUGUSTUS	gene	17567958	17568468	.	-	.	Ledus.S3G224600
Ledus.S3	AUGUSTUS	transcript	17567958	17568468	.	-	.	transcript_id "Ledus.S3G224600.t1"; gene_id "Ledus.S3G224600"
Ledus.S3	AUGUSTUS	stop_codon	17567955	17567957	.	-	0	transcript_id "Ledus.S3G224600.t1"; gene_id "Ledus.S3G224600"
Ledus.S3	AUGUSTUS	CDS	17567958	17568200	0.9	-	0	transcript_id "Ledus.S3G224600.t1"; gene_id "Ledus.S3G224600"
Ledus.S3	AUGUSTUS	exon	17567958	17568200	.	-	.	transcript_id "Ledus.S3G224600.t1"; gene_id "Ledus.S3G224600"
Ledus.S3	AUGUSTUS	intron	17568201	17568372	.	-	.	transcript_id "Ledus.S3G224600.t1"; gene_id "Ledus.S3G224600"
Ledus.S3	AUGUSTUS	CDS	17568373	17568468	0.67	-	0	transcript_id "Ledus.S3G224600.t1"; gene_id "Ledus.S3G224600"
Ledus.S3	AUGUSTUS	exon	17568373	17568468	.	-	.	transcript_id "Ledus.S3G224600.t1"; gene_id "Ledus.S3G224600"
Ledus.S3	AUGUSTUS	start_codon	17568466	17568468	.	-	0	transcript_id "Ledus.S3G224600.t1"; gene_id "Ledus.S3G224600"
# overlap start --------------------------------------------------------------------------------
# this overlap has 1 different transcripts
# This transcript jg11187.t1 is derived from g4805.t1 from the input file /mnt/data/ps997/projects/hornwort_genomes/analysis/Leiosporoceros_dussii/reannotation/genes/braker/braker/augustus.E.gtf
# It is supported by 0 other predicted genes
# the core of this joined transcript has priority 2
Ledus.S4	AUGUSTUS	gene	2499908	2501969	.	-	.	Ledus.S4G034300
Ledus.S4	AUGUSTUS	transcript	2499908	2501969	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	stop_codon	2499905	2499907	.	-	0	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	CDS	2499908	2499950	0.93	-	1	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	exon	2499908	2499950	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	intron	2499951	2500038	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	CDS	2500039	2500073	0.81	-	0	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	exon	2500039	2500073	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	intron	2500074	2500282	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	CDS	2500283	2500338	0.9	-	2	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	exon	2500283	2500338	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	intron	2500339	2500593	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	CDS	2500594	2500815	1	-	2	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	exon	2500594	2500815	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	intron	2500816	2500940	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	CDS	2500941	2501149	0.97	-	1	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	exon	2500941	2501149	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	intron	2501150	2501390	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	CDS	2501391	2501474	0.91	-	1	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	exon	2501391	2501474	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	intron	2501475	2501583	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	CDS	2501584	2501660	0.93	-	0	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	exon	2501584	2501660	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	intron	2501661	2501852	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	CDS	2501853	2501969	0.74	-	0	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	exon	2501853	2501969	.	-	.	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"
Ledus.S4	AUGUSTUS	start_codon	2501967	2501969	.	-	0	transcript_id "Ledus.S4G034300.t1"; gene_id "Ledus.S4G034300"